# hmmscan :: search sequence(s) against a profile database
# HMMER 3.2.1 (June 2018); http://hmmer.org/
# Copyright (C) 2018 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Klebsiella_pneumoniae-CH1034/GCA_001404095.1_CH1034_protein.faa
# target HMM database:             /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# output directed to file:         /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Klebsiella_pneumoniae-CH1034/GCA_001404095.1_CH1034_protein.PFam32-A
# per-seq hits tabular output:     /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Klebsiella_pneumoniae-CH1034/GCA_001404095.1_CH1034_protein.PFam32-A.tblout
# number of worker threads:        20
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       CTQ26094.1  [L=192]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-35  122.5   3.7    4.3e-35  122.3   3.7    1.0  1  LamB           LamB porin
     0.0017   18.5   3.3     0.0017   18.5   3.3    1.9  2  OMP_b-brl      Outer membrane protein beta-barrel domain
  ------ inclusion threshold ------
      0.069   13.1   0.4        1.2    9.1   0.1    2.4  2  Inhibitor_I36  Peptidase inhibitor family I36


Domain annotation for each model (and alignments):
>> LamB  LamB porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   3.7   7.2e-39   4.3e-35     182     379 .]       2     192 .]       1     192 [] 0.89

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 7.2e-39
                 EEEEEEEE--T-TT---EEE..EEEEEEEEEETTEEEEEEEEEEECCCTT-SS---TTE----....EEEEEEEEEEEEEETTTEEEEEEEEEEEEEE. CS
        LamB 182 gldyaranksdakkaakdgv..mltlehtqsflggfnklalqygtglgaenkgggsggelnnaaekdakslrlleqgvvqlsdkfslayavvyqksddr 278
                 +++y++++k+ +++a  +++  +l l+ht++   g+nk++l+y++++ +        + +n + ++d ++++   +g  +++++ +++y++++++ d++
  CTQ26094.1   2 YANYGFDSKAVDSDARLEAWqgGLVLSHTND--SGVNKVILRYSDNSDN--------SVYN-K-TDDLTTVYASFEGSHKFTQQAQVEYLLAFHDYDNG 88 
                 6899999999999999999999999999994..5*************33........2233.2.35789****************************** PP

                 .TTS--EEEEEEEEEEEEECCTTEEEEEEEEEEEEE.....E.EEEEEEEEEEEESSSSTT-SSEEEEEEEEEEEEESEEETGGGSB-SS-EEEEEEEE CS
        LamB 279 ydngddkkwlsagvRpvykltdnfklllElgydrvk.....kgnlyKlTlaptlkagsgfwsRPelRlfatyakwneaakdalskagakkgdtseltfG 372
                 +dn d++k++ a+vRp+y ++d+++++lE+gy+rv+     +++ +KlTl++++++g+g   RP+lR+++t  + +++   +   +g+++++ ++l++G
  CTQ26094.1  89 KDNTDNRKNYGAIVRPMYFWNDVHSTWLEAGYQRVDydqggDNHGWKLTLSQNIAIGMGPEFRPMLRFYVTGGQVDNEHTAK--VNGTQDQQLDSLNVG 185
                 ************************************7654437*******************************77776663..56777888999**** PP

                 EEEEEEE CS
        LamB 373 vqaEaWW 379
                  ++EaW+
  CTQ26094.1 186 GMFEAWF 192
                 ******9 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.8      0.15   8.9e+02      30      74 ..       4      53 ..       1      71 [. 0.50
   2 !   18.5   3.3   2.8e-07    0.0017      22     122 ..      74     175 ..      57     189 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.15
   OMP_b-brl 30 lskvkvdgvgsds...gfgfgvgagyefnd..nvgvegglsysgd.kdysg 74
                ++ +++++v+sd+    +++g+ +  ++nd     v +++s ++d   y++
  CTQ26094.1  4 NYGFDSKAVDSDArleAWQGGLVL-SHTNDsgVNKVILRYSDNSDnSVYNK 53
                444555555555533223333333.35566555777788877554244444 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 2.8e-07
   OMP_b-brl  22 fyvggglglskvkvdgvgsds..gfgfgvgagyefndnvgvegglsysgdkdysgsgktdikinlls.vpvnagyafnlsdsvlpyggaGlgytkvevd 117
                 ++v+  l++ +++++ +++d+  ++g  v+ +y++nd  +  ++++y++ ++++g+++  +k +l + + + +g  f+  + ++ y+++G   ++ + +
  CTQ26094.1  74 AQVEYLLAFHDYDNGKDNTDNrkNYGAIVRPMYFWNDVHSTWLEAGYQRVDYDQGGDNHGWKLTLSQnIAIGMGPEFR--PMLRFYVTGGQVDNEHTAK 170
                 45666677778888666666522577778888*****98888888888888888875555553333348888888888..569*******999999999 PP

   OMP_b-brl 118 vsgng 122
                 v+g++
  CTQ26094.1 171 VNGTQ 175
                 99883 PP

>> Inhibitor_I36  Peptidase inhibitor family I36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1    0.0002       1.2      33      59 ..      33      63 ..      10      71 .. 0.78
   2 ?    1.6   0.0     0.044   2.6e+02      22      52 ..     130     176 ..     120     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0002
  Inhibitor_I36 33 a....avganmndnarSvwNrtgsrvtvYtd 59
                   +    +  ++ ++   Sv+N t+   tvY +
     CTQ26094.1 33 SgvnkVILRYSDNSDNSVYNKTDDLTTVYAS 63
                   234456677889999**************65 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.044
  Inhibitor_I36  22 t..Gtraelsgssa..............avganmndnarSvwNrtgs 52 
                    +  G   +ls++ a              ++g++++++  + +N+t+ 
     CTQ26094.1 130 DnhGWKLTLSQNIAigmgpefrpmlrfyVTGGQVDNEHTAKVNGTQD 176
                    24477777888887999999999999998899999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1315.70
//
Query:       CTQ26095.1  [L=265]
Description: putative 2-aminoethylphosphonate transport system permease protein PhnV [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-13   51.1  16.0    1.3e-13   51.1  16.0    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.8     0.027   4.9e+02     108     154 ..      26      70 ..       9      83 .. 0.54
   2 !   51.1  16.0   7.1e-18   1.3e-13       2     182 ..      80     265 .]      79     265 .] 0.85

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.027
  BPD_transp_1 108 ppiitglilafggllggavlleflgswpGlgtllleailgydyseis 154
                    p++  l+ ++   ++g + + f+++   + + +  a + + +s+ +
    CTQ26095.1  26 LPLAVILLSSLSKQWNGLLPTGFTFAH--FVNAFRGAAWDSLFSSLM 70 
                   344444555555555555555555543..555555555555555544 PP

  == domain 2  score: 51.1 bits;  conditional E-value: 7.1e-18
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf.vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasr 94 
                   +l G++aa   ++++ +l+k l   +++++++Ps+ +++ ++++f         +++ v+++ ++ + ++++ ++  +l  ++ d +++a  lGas+
    CTQ26095.1  80 LLCGMWAAlalRQYGATLQKYLGLAFYLPSAIPSVSVGLGILVAFsQGPLQMNGTFFIVLAAHFVLISAFTFSNVTTGLARISADIENVASSLGASP 176
                   789************************************999988733334455777799999********************************** PP

  BPD_transp_1  95 wqifrkvvlPnalppiitglilafggllggavlleflgswpG...lgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                   w ++r+v+lP++ p +i+ l+l++ +++g+  ++ ++   pG   l  ++++ +   +++ +s +++++lv ++lll+  +  ++r l++r
    CTQ26095.1 177 WYRLRHVTLPLMTPWMISALALSLSLSMGELGATVMIY-PPGwttLPVTIFSLTDRGNIADGS-ALTIVLVGVTLLLMMKLERIARRLSQR 265
                   *************************************9.778544555555555555555555.888888888888888877777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1891.47
//
Query:       CTQ26096.1  [L=287]
Description: putative 2-aminoethylphosphonate transport system permease protein PhnU [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-15   56.9  23.7    2.2e-15   56.9  23.7    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   7.4     0.018   3.2e+02      25      66 ..      18      99 ..      16     102 .. 0.86
   2 !   56.9  23.7   1.2e-19   2.2e-15       2     182 ..      84     282 ..      83     285 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.018
  BPD_transp_1 25 ivllslPsfvlaillvlvf.......................................vilsilghlilp.viillllsaap 66
                  +++l+lP +vla l+++ +                                       +++  lg l+l+ v++l+l+++++
    CTQ26096.1 18 YLWLALPLLVLATLFFYPLlliaeqalrdasgnlsletfwqvidskrfigallntlqiAVFATLGCLVLGsVLALILVFIPF 99
                  578999****9999999999999******************99999999999999999888899999999666666666554 PP

  == domain 2  score: 56.9 bits;  conditional E-value: 1.2e-19
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf.................vilsilghlilpviillllsaapyvrlirraalrs 78 
                   ++lG+++a   ++  +++++l++++i+++ +lP+f++ + ++++                      ++ ++i +vi++ ++ ++p+v++   a+lr+
    CTQ26096.1  84 LVLGSVLAlilVFIPFPGSQLVSRVIDTFIALPTFLITLAFTFIYgsagllngtlmalfafeLPPVDFLYSINGVILAEITVFTPLVMRPLMAGLRQ 180
                   5789999999999***********************99998866699999999999999999666678899999*********************** PP

  BPD_transp_1  79 lpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadil 175
                   ++k++ eaa +lGa + +++ +v++P+alp +++g  l + +  +++ +++f+g++ G++tl + +++   + + +  ++ +++++ +ll+l ++ l
    CTQ26096.1 181 IDKSQLEAASILGAHPLRVITQVIFPAALPALMAGGSLCLLLTTNEFGIVLFIGAK-GVNTLPMMVYSKAILESDY-SVACMIALINILLSLGLFML 275
                   ******************************************************77.5766666555555555555.46777777777777777777 PP

  BPD_transp_1 176 qrlldpr 182
                   +rl + r
    CTQ26096.1 276 YRLAAAR 282
                   7776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2214.06
//
Query:       CTQ26097.1  [L=370]
Description: putative 2-aminoethylphosphonate import ATP-binding protein PhnT [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-35  121.2   0.0    6.7e-35  120.6   0.0    1.3  1  ABC_tran       ABC transporter
    4.9e-13   49.1   0.1    1.6e-12   47.4   0.0    2.0  1  TOBE_2         TOBE domain
    7.5e-11   42.4   0.1    0.00028   20.8   0.0    2.1  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
      2e-05   25.0   0.1    5.1e-05   23.7   0.1    1.6  1  AAA_16         AAA ATPase domain
    3.1e-05   23.5   0.0       0.17   11.3   0.0    2.1  2  SMC_N          RecF/RecN/SMC N terminal domain
    0.00032   20.5   0.2     0.0011   18.7   0.0    2.0  2  AAA_30         AAA domain
    0.00045   20.5   0.2     0.0024   18.2   0.2    2.0  1  AAA_22         AAA domain
    0.00049   19.8   0.0      0.001   18.8   0.0    1.5  1  AAA_29         P-loop containing region of AAA domain
     0.0019   18.2   0.0     0.0042   17.1   0.0    1.5  1  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain
     0.0058   17.1   0.2      0.039   14.4   0.2    2.1  1  AAA            ATPase family associated with various cellular
     0.0071   16.5   0.1      0.016   15.4   0.1    1.7  1  AAA_33         AAA domain
  ------ inclusion threshold ------
      0.016   14.1   0.0        1.4    7.6   0.0    2.1  2  ABC_ATPase     Predicted ATPase of the ABC class
      0.016   15.7   0.1      0.026   15.0   0.1    1.2  1  AAA_23         AAA domain
      0.024   14.2   1.2      0.088   12.4   0.1    2.4  3  AAA_25         AAA domain
      0.026   13.6   0.0      0.039   13.0   0.0    1.3  1  T2SSE          Type II/IV secretion system protein
      0.043   13.5   0.0      0.061   13.0   0.0    1.2  1  AAA_15         AAA ATPase domain
      0.045   14.1   0.2       0.12   12.7   0.2    1.7  1  AAA_19         AAA domain
      0.047   12.7   0.1      0.074   12.1   0.1    1.3  1  DUF3987        Protein of unknown function (DUF3987)
      0.048   13.4   0.4       0.11   12.1   0.0    1.7  2  AAA_24         AAA domain
      0.053   12.4   0.0      0.096   11.6   0.0    1.3  1  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
      0.054   13.4   0.1      0.093   12.6   0.1    1.3  1  RsgA_GTPase    RsgA GTPase
       0.06   13.0   0.0       0.14   11.7   0.0    1.6  2  SRP54          SRP54-type protein, GTPase domain
       0.07   13.0   0.1       0.21   11.5   0.1    1.8  1  NACHT          NACHT domain
      0.094   12.8   0.1        7.9    6.5   0.1    2.1  2  Dynamin_N      Dynamin family
       0.11   12.5   0.1        0.3   11.1   0.1    1.8  1  AAA_5          AAA domain (dynein-related subfamily)
       0.13   12.2   0.0        0.2   11.5   0.0    1.2  1  Rad17          Rad17 P-loop domain
       0.18   10.9   0.0       0.27   10.4   0.0    1.2  1  NB-ARC         NB-ARC domain
       0.21   11.8   0.5       0.42   10.8   0.1    1.7  2  AAA_28         AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   0.0     1e-37   6.7e-35       1     136 [.      34     176 ..      34     177 .. 0.90

  Alignments for each domain:
  == domain 1  score: 120.6 bits;  conditional E-value: 1e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTC.....HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxx.....xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdee.....iek 87 
                 lk +sl++++ge++a++G++G+GK+t+l+++ag ++p+ G+il+ ++d+++  l+ +++ ++++ q+  lfp+++v++n       +  ++     +e+
  CTQ26097.1  34 LKPLSLTIEPGEVLALIGPSGSGKTTVLRAIAGFVQPAGGRILIGDTDVTQ--LPPYKRGLAMVVQNYALFPHMKVEDNvafglraQ--KQprgliAER 128
                 7899***********************************************..*****************************99652..3345788777 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + + l++++++d   ++ p++LSgGq+qrva+ara++ +p++lllDEp 
  CTQ26097.1 129 VTEALKIVGMADYA-TRYPHQLSGGQQQRVAIARAIAVRPRVLLLDEPL 176
                 77777777754444.4778*****************************7 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   2.5e-15   1.6e-12       1      75 [.     294     366 ..     294     367 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 2.5e-15
      TOBE_2   1 laiRPEklrlaaagg.anglsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpddavv 75 
                 l+iRP +++la++++  n+l++t ++v+++G+ t++++++ag++  +v +++++    +++Gd+++l ++p dav+
  CTQ26097.1 294 LCIRPQHMSLAPRSAtSNRLNATLTSVHWQGDLTHLLCDVAGEAVRIVMTQVNP---LPRAGDKLALYFEPGDAVL 366
                 79********95555479************************************...9****************98 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   9.4e-07    0.0006       3      22 ..      48      67 ..      46      91 .. 0.81
   2 !   20.8   0.0   4.4e-07   0.00028     223     298 ..     135     209 ..     100     213 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 9.4e-07
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                +liGp gsGK+++L+a+ ++
  CTQ26097.1 48 ALIGPSGSGKTTVLRAIAGF 67
                8****************776 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 4.4e-07
      AAA_21 223 flengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr..ngaQviltTHS 298
                 ++ + d+  + +++lS G+++  a++ a++ ++   ++ll+DEp + L+ ++ +  +e + +l+r      ++ +TH+
  CTQ26097.1 135 IVGMADYATRYPHQLSGGQQQRVAIARAIAVRP---RVLLLDEPLSALDAQIRHNMVEEIARLHRelPELTILYVTHD 209
                 555667788899**********99999999999...************************7777778889*******8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1     8e-08   5.1e-05      25     116 ..      45     184 ..      37     219 .. 0.64

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 8e-08
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqllde........aesaeleawrekleeala........ 106
                 e++ l+G+sG+GK++++r+++  ++ +gg  l g++d   +  py   la +  +  l+  ++ e        a+++ ++  +e+ +eal+        
  CTQ26097.1  45 EVLALIGPSGSGKTTVLRAIAGFVQPAGGRILIGDTDVT-QLPPYKRgLAMVVQNYALFPHMKVEdnvafglrAQKQPRGLIAERVTEALKivgmadya 142
                 7899*****************999999999999999987.44677444555555556666666663344444455555666666666666666666666 PP

      AAA_16 107 ................................avpelagaea 116
                                                 + ++l+++++
  CTQ26097.1 143 tryphqlsggqqqrvaiaraiavrprvllldePLSALDAQIR 184
                 665555555555555555555555555555555555555555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00056      0.36      26      45 ..      46      65 ..      21      70 .. 0.83
   2 !   11.3   0.0   0.00027      0.17     133     199 ..     145     210 ..      96     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00056
                EEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAil 45
                + a++Gp GSGK+ +l Ai 
  CTQ26097.1 46 VLALIGPSGSGKTTVLRAIA 65
                6799**************95 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00027
                 STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT...SEEEEE-SSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
       SMC_N 133 skelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn...aQfivislre 199
                 ++++LSgG+++ va+a  +A+   +p+ + llDe  +aLD++ +++++e + + + +     ++ +++++
  CTQ26097.1 145 YPHQLSGGQQQRVAIARAIAV---RPR-VLLLDEPLSALDAQIRHNMVEEIARLHRElpeLTILYVTHDQ 210
                 5669************99886...555.5689*********99999988877655442224555555554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.8e-06    0.0011      16      50 ..      42      76 ..      37      95 .. 0.88
   2 ?   -1.1   0.0         2   1.3e+03      34      62 ..     187     216 ..     121     236 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.8e-06
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaaggrvi 50
                ++  v +l Gp G+GKtt+l+a++  ++ aggr++
  CTQ26097.1 42 EPGEVLALIGPSGSGKTTVLRAIAGFVQPAGGRIL 76
                5566999*********************9988875 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2
      AAA_30  34 alkalreaweaa.ggrviglAptgkaAkvL 62 
                 +++++++++++  + +++ +++ ++ A +L
  CTQ26097.1 187 MVEEIARLHRELpELTILYVTHDQTEALTL 216
                 333444444444444445555555555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   3.7e-06    0.0024       6     115 ..      45     194 ..      41     214 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.7e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.................................erpevvfvtlpsstsskdl.lrellralglelka 70 
                  +l+++G+sG+GKTt+lr ++   + +                                      +  + v + l +++ ++ l ++++ +al+  + a
  CTQ26097.1  45 EVLALIGPSGSGKTTVLRAIAGFVQPA----GgriligdtdvtqlppykrglamvvqnyalfphmKVEDNVAFGLRAQKQPRGLiAERVTEALKIVGMA 139
                 6799***************99887533....22345777777777777777777777777776665555556666666656665567777777766666 PP

      AAA_22  71 .....erlsseellealeqalrarav.ielliiDEaqh.lr...seealeeLrsl 115
                      ++++++   ++    +ra av +++l++DE    l+   +++++ee+ +l
  CTQ26097.1 140 dyatrYPHQLSGGQQQRVAIARAIAVrPRVLLLDEPLSaLDaqiRHNMVEEIARL 194
                 6654433333333333333333333366677777755556554446777766655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.6e-06     0.001      17      48 ..      39      70 ..      33      75 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.6e-06
      AAA_29 17 ieidlkgatlltGpsGsGKSTllDAiqalLvp 48
                ++i++ ++  l+GpsGsGK+T+l Ai+    p
  CTQ26097.1 39 LTIEPGEVLALIGPSGSGKTTVLRAIAGFVQP 70
                677878899**************999866555 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.5e-06    0.0042       6      55 ..      51     137 ..      46     206 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.5e-06
                 SSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH......................................C CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................x RF
        CbiA   6 tkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep......................................d 55 
                 + +G+GKTt++ ++a   + +g r+l  D+D+   +  +  gl + +++                                      +
  CTQ26097.1  51 GPSGSGKTTVLRAIAGFVQPAGGRILIGDTDVT-QLPPYKRGLAMVVQNyalfphmkvednvafglraqkqprgliaervtealkivG 137
                 679*****************************9.666667777777776766776666666666666555555554444444444441 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   6.1e-05     0.039       2      23 ..      48      69 ..      47     217 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.1e-05
                EEESSTTSSHHHHHHHHHHHHT CS
         AAA  2 llyGppGtGKTllakavakelg 23
                 l+Gp G GKT++ +a+a  ++
  CTQ26097.1 48 ALIGPSGSGKTTVLRAIAGFVQ 69
                599***************8753 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   2.5e-05     0.016       1      33 [.      46      88 ..      46     203 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.5e-05
      AAA_33  1 lvllvGlpGsGKstlaerl...lkklgavllssdt.......l 33
                ++ l+G++GsGK+t+++ +   +++ g+ +l  dt       +
  CTQ26097.1 46 VLALIGPSGSGKTTVLRAIagfVQPAGGRILIGDTdvtqlppY 88
                6789*************98666677776666666645555551 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.025        16     241     265 ..      40      65 ..      25      71 .. 0.88
   2 ?    7.6   0.0    0.0022       1.4     323     366 ..     149     192 ..     141     205 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.025
                 EE-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAle 265
                  i  G v +++G+   GK+T L+A++
  CTQ26097.1  40 TIEPGeVLALIGPSGSGKTTVLRAIA 65 
                 6777779999**************97 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0022
                 --HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS CS
  ABC_ATPase 323 ASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelv 366
                  SG   q ++i++a+ ++ ++lL+DE  sA    ir ++++e+ 
  CTQ26097.1 149 LSGGQQQRVAIARAIAVRPRVLLLDEPLSALDAQIRHNMVEEIA 192
                 59999*************************99999988888775 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1     4e-05     0.026      21      40 ..      46      65 ..      30      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4e-05
      AAA_23 21 ltlItGpNGaGKTTildAik 40
                + +++Gp G+GKTT+l+Ai 
  CTQ26097.1 46 VLALIGPSGSGKTTVLRAIA 65
                55789*************95 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       2.1   1.4e+03      45      75 ..       3      33 ..       2      35 .. 0.79
   2 ?   12.4   0.1   0.00014     0.088      30      60 ..      41      73 ..      37      97 .. 0.78
   3 ?   -2.4   0.0       4.7     3e+03      85     118 ..     308     342 ..     305     355 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.1
      AAA_25 45 GKttlaldlalavatGkpwlgpvapeqgkVl 75
                 Ktt++++ +la ++G  +   +++ +g+V+
  CTQ26097.1  3 MKTTVTSSPSLAGTSGITLDSLRVSYHGNVV 33
                6*************99976444445888887 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00014
      AAA_25 30 lpagelallaGapgtGKttlaldlalava..tG 60
                +  ge+ +l+G++g+GKtt++  +a  v    G
  CTQ26097.1 41 IEPGEVLALIGPSGSGKTTVLRAIAGFVQpaGG 73
                6679****************9988877755344 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.7
      AAA_25  85 elrrRlravgealrddarllvldlagv.eslpLfa 118
                  + +Rl a+++ + ++++l+ l ++   e +++++
  CTQ26097.1 308 ATSNRLNATLTSVHWQGDLTHLLCDVAgEAVRIVM 342
                 56789999998887777776665544445666654 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.1e-05     0.039     130     163 ..      45      77 ..      19     116 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.1e-05
       T2SSE 130 glilvsGgTgsGKttllyallkeinksderivtv 163
                  ++ + G+ gsGKtt+l a+  +++    ri+ +
  CTQ26097.1  45 EVLALIGPSGSGKTTVLRAIAGFVQPAGGRIL-I 77 
                 556678*******************9977775.4 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.5e-05     0.061      22      48 ..      44      69 ..      34      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.5e-05
      AAA_15 22 seeltvliGkNnsGKSsilealdlFln 48
                 e +  liG+ +sGK+++l+a+  F +
  CTQ26097.1 44 GE-VLALIGPSGSGKTTVLRAIAGFVQ 69
                44.899****************99987 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   0.00018      0.12      10      35 ..      44      69 ..      39      85 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00018
      AAA_19 10 ekvllvtaGpGtGKTrvlkhivallv 35
                 +vl+++++ G+GKT+vl++i   ++
  CTQ26097.1 44 GEVLALIGPSGSGKTTVLRAIAGFVQ 69
                67999**************9876655 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00012     0.074       3      62 ..      10      70 ..       8      76 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
     DUF3987  3 ppdllalsaltalsaalqgrvrvepkrgy.teplnLytlvvapsGerKSpvdklvlrplee 62
                +p+l+++s +t  s+ +  + +v +k+ + t  +   ++ ++psG++K++v+++++  +++
  CTQ26097.1 10 SPSLAGTSGITLDSLRVSYHGNVVLKPLSlTIEPGEVLALIGPSGSGKTTVLRAIAGFVQP 70
                68999**********************99*999999*****************99988876 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00018      0.11       5      32 ..      47      81 ..      44      85 .. 0.85
   2 ?   -3.3   0.0       9.5   6.1e+03     114     137 ..     191     215 ..     183     223 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
      AAA_24  5 iliyGpsgiGKTtlakel.......gpkplfidte 32
                ++++Gpsg+GKTt+++ +       g ++l+ dt+
  CTQ26097.1 47 LALIGPSGSGKTTVLRAIagfvqpaGGRILIGDTD 81
                789************99988888888888887776 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.5
      AAA_24 114 llkklqelrk.nvifiahektrkde 137
                 + +  +el++ ++  + h +t+  +
  CTQ26097.1 191 IARLHRELPElTILYVTHDQTEALT 215
                 4444678888999999999988655 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015     0.096      18      55 ..      47      84 ..      32      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
  TrwB_AAD_bind 18 ilivGttGsGKtqalekllrairargdraivlDltGaf 55
                   ++++G  GsGKt++l+++   ++  g r+++ D+  + 
     CTQ26097.1 47 LALIGPSGSGKTTVLRAIAGFVQPAGGRILIGDTDVTQ 84
                   4689*****************************97665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00014     0.093      80     121 ..      24      66 ..       7      76 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00014
                  EE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  80 llvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallp 121
                  l vs + +  l+ l+  ++  ++ +l+G+SG GK+t++ a+++
   CTQ26097.1  24 LRVSYHGNVVLKPLSLTIEPgEVLALIGPSGSGKTTVLRAIAG 66 
                  55666666667777777777799***************99987 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00022      0.14       3      39 ..      46      82 ..      44      90 .. 0.90
   2 ?   -3.1   0.0       8.1   5.2e+03      96     113 ..     182     199 ..     157     213 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00022
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEEST CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDt 39
                v++l+G+ G+GKTt l  +a  ++  g ++l+  +D+
  CTQ26097.1 46 VLALIGPSGSGKTTVLRAIAGFVQPAGGRILIGDTDV 82
                789*******************999999999988876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.1
                 TTHHHHHHHHHHHHHHHS CS
       SRP54  96 qndkelmeelkkikkvvk 113
                 q+ ++++ee++++++ + 
  CTQ26097.1 182 QIRHNMVEEIARLHRELP 199
                 334444455544444443 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00033      0.21       2      21 ..      46      65 ..      45      69 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00033
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +++l G++GsGKTt l+ +a
  CTQ26097.1 46 VLALIGPSGSGKTTVLRAIA 65
                7899*************997 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.012       7.9       1      21 [.      47      67 ..      47      76 .. 0.87
   2 ?    4.1   0.0     0.069        44      31     113 ..     142     224 ..     131     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.012
                EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlge 21
                +a++G   sGK++vl a+ g 
  CTQ26097.1 47 LALIGPSGSGKTTVLRAIAGF 67
                589***************996 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.069
                 ---S-EEEEECCT---CCS...SSEEEE.T-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEETTS-SEEEEE---B-S CS
   Dynamin_N  31 tTrrplelqlgeeeeaseravkeelkek.ekkledfsevreeieketekiagankgiskkvillkilsllvkgltlvDlPGlds 113
                  Tr p +l+ g+++++  +++++ ++ +    +e +s+++ +i+  + +   ++ +   ++++l+++  + + ltl D  G+ +
  CTQ26097.1 142 ATRYPHQLSGGQQQRVAIARAIA-VRPRvLLLDEPLSALDAQIRHNMVEEIARLHRELPELTILYVTHDQTEALTLADKIGIMK 224
                 79*************88655555.4444599999******999999988888999999******************99988865 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00048       0.3       3      23 ..      48      68 ..      46      83 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00048
                EEE--SSSSHHHHHHHGGGGB CS
       AAA_5  3 lLvGppGtgKselaerlaaal 23
                 L+Gp+G+gK+++ + +a ++
  CTQ26097.1 48 ALIGPSGSGKTTVLRAIAGFV 68
                59*************999776 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00032       0.2      36      66 ..      35      65 ..      31      71 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00032
       Rad17 36 kadvLesrkkriLLisGPsGCgkstvvkvLs 66
                k  +L  ++ ++L + GPsG gk+tv++ ++
  CTQ26097.1 35 KPLSLTIEPGEVLALIGPSGSGKTTVLRAIA 65
                556777788899***************9876 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00043      0.27       7      40 ..      32      64 ..      26      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00043
                HHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHH CS
      NB-ARC  7 kviekLlekdelqslvvalvGmgGvGKttlakqi 40
                 v + L+   e++  v+al G  G+GKtt+++ i
  CTQ26097.1 32 VVLKPLSLTIEPG-EVLALIGPSGSGKTTVLRAI 64
                5677777778888.89**************9987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00066      0.42       3      20 ..      48      65 ..      46      79 .. 0.88
   2 ?   -2.6   0.0       8.9   5.7e+03      16      16 ..     176     176 ..     126     200 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00066
      AAA_28  3 vitGgestGKTtlleaLa 20
                +++G++++GKTt+l+a+a
  CTQ26097.1 48 ALIGPSGSGKTTVLRAIA 65
                79*************998 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.9
      AAA_28  16 l 16 
                 l
  CTQ26097.1 176 L 176
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2651.87
//
Query:       CTQ26098.1  [L=337]
Description: putative 2-aminoethylphosphonate-binding periplasmic protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-25   89.2   4.7    4.6e-25   89.2   4.7    1.6  2  SBP_bac_1   Bacterial extracellular solute-binding protein
    9.2e-25   87.5   1.6    1.5e-24   86.8   1.6    1.3  1  SBP_bac_6   Bacterial extracellular solute-binding protein
    2.1e-19   70.5   2.1    2.9e-19   70.0   2.1    1.1  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    3.5e-18   66.2   1.4    4.5e-18   65.8   1.4    1.1  1  SBP_bac_11  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   4.7     1e-28   4.6e-25       7     314 ..      38     276 ..      31     277 .. 0.91
   2 ?   -1.8   0.1      0.52   2.3e+03     124     139 ..     299     320 ..     281     324 .. 0.69

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 1e-28
                 HHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCEE CS
   SBP_bac_1   7 gaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkildsk 105
                 ++++q  + +af+k  +gikV+++ +gsg+  +  +la + ++++aDv  + + +i r ak++ll+ ++p   a+ +  ++++a   +++         
  CTQ26098.1  38 NSWYQSQF-AAFTK-ATGIKVQYVEGGSGAIVE--RLAKERTNPQADVLVTVPPFIQRAAKEQLLATFTPQGSAQIPGANDRYAPLVNNYL-------- 124
                 56777777.*****.9*****************..88888888999*****************************9999999988877755........ PP

                 EESEEEEEEEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHHHHHHHHH CS
   SBP_bac_1 106 vlyvPlyaargliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaatylvkly 204
                            +iYN +l++    ++p +W++l++   k k +  +p      g+a++ +++ ++a+    g                        k  
  CTQ26098.1 125 ----------TFIYNSQLLK----SAPASWQDLLDSRYKNKLQYSTP------GQAGDGTAVMLQAFHSLGG------------------------KDA 179
                 ..........7*********....5567*******************......8888888888888777777........................778 PP

                 HHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCSTHHHHHH CS
   SBP_bac_1 205 avanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgsknpeaAkk 303
                 ++a+l k +++++ ++++   ++al+++Ge  +a   l + l++m  +p+v+   ++++++e  + a               y+++++ + +n e  kk
  CTQ26098.1 180 GFAYLGKLQANNVGPSASTGKLTALVNKGELYVANGDLQMNLSQMARNPNVKIFWPADDKGERSALA-------------LPYTIGLVQNGPNSENGKK 265
                 9999999*****************************************************8877766.............89***************** PP

                 HHHHHTSHHHH CS
   SBP_bac_1 304 Fldfllspeaq 314
                 +++fll + aq
  CTQ26098.1 266 LINFLLDKPAQ 276
                 *******9998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.52
                 HH..CTTGGG....SHBHHHHH CS
   SBP_bac_1 124 fe..kagldp....pwtWdelv 139
                 f+  ka ld+    +++Wd+++
  CTQ26098.1 299 FKaaKAALDGvkswEPNWDDVA 320
                 3356777777777778888765 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   1.6   3.4e-28   1.5e-24       1     242 [.      76     319 ..      76     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 3.4e-28
   SBP_bac_6   1 nplpdlilsfdkdflekfieeglfqpldpanlpnvnkdfaeeglkdpdgkyypygvgplvlavnkdrlkgrpvPksWaDLldPeykgkvalpgnng.sd 98 
                 np +d+++   ++f++++++e+l++ ++p+  ++++      g +d    y+p+  ++l +++n++ lk    P sW+DLld +yk+k    ++ + +d
  CTQ26098.1  76 NPQADVLV-TVPPFIQRAAKEQLLATFTPQGSAQIP------GANDR---YAPLVNNYLTFIYNSQLLKSA--PASWQDLLDSRYKNKLQYSTPGQaGD 162
                 789*****.99*************************......99996...******************888..**************887777777457 PP

   SBP_bac_6  99 lfealllalykdfgedgvkkllrnlkanlhpaq..mvkaagslesgepavsvvpyffadilpekkkgknlkvvwPed..G...alvspifmlvkkg.kk 189
                   +++l a++   g+d++ ++l +l an+      + k  + +++ge  ++v+      +l +  ++ n+k+ wP d  G   al+ p+++ ++++ ++
  CTQ26098.1 163 GTAVMLQAFHSLGGKDAGFAYLGKLQANNVGPSasTGKLTALVNKGE--LYVANGDLQMNLSQMARNPNVKIFWPADdkGersALALPYTIGLVQNgPN 259
                 77777777777666**9999999998876544445777777788888..8887776666666666555*******987886668*************** PP

   SBP_bac_6 190 kelakafidfllspevqailakaggvfPvv.......tnpavlnelpegaklkwldwdyi 242
                 +e  k++i+fll++ +q+ +++ +  +Pv        +n ++++ + +g k   ++wd +
  CTQ26098.1 260 SENGKKLINFLLDKPAQSSVSARSWGLPVRsdvapddANFKAAKAALDGVKSWEPNWDDV 319
                 *****************999888777**99998887788888888888888888888865 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   2.1   6.5e-23   2.9e-19       4     279 ..      46     304 ..      44     306 .. 0.83

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 6.5e-23
                 HHHHHH-TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH-HHHHHTT--TS.----EEEEEEE-EEEEEHH CS
   SBP_bac_8   4 kefekktgvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnlddltdalaavgydgklygvPyasetpyvliynkd 102
                 ++f+k+tg+kv++v+ +s+ +++ l  +    t p++dv++    +++++a+e+lla ++    +++++ a +        y  P++ + + ++iyn  
  CTQ26098.1  46 AAFTKATGIKVQYVEGGSGAIVERLAKE---RTNPQADVLVTVPPFIQRAAKEQLLATFTP-QGSAQIPGAND-----R--Y-APLVNN-YLTFIYNSQ 131
                 79***********************995...688999***********************6.78999966444.....3..4.566655.48******* PP

                 HHHHS.---BHHHHHHHHHHHHHH-SEGG--.-GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE-S...--SSTTTTTSBSEEEE-TTH CS
   SBP_bac_8 103 llekaedpktwdellaaakklkgkfglpdpa.sgwlqaallakdgksldddggkdglkealellkklkdngktydtg.adavsefanGevaftingswd 199
                 ll+ a  p++w++ll+    +k+k ++++p+ +g + a +l+ +  sl ++      ++ +++l kl++n + ++++  ++++++ +Ge  ++ ng+ +
  CTQ26098.1 132 LLKSA--PASWQDLLD--SRYKNKLQYSTPGqAGDGTAVMLQ-AFHSLGGK------DAGFAYLGKLQANNVGPSAStGKLTALVNKGEL-YVANGDLQ 218
                 ***75..*********..999999999988844777777777.77788765......9*************9997552789999999995.6889**** PP

                 HHHHH-T.TTSEEEE--...S--...EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHH.HH---BS-S-TTTHHHHHH-HH CS
   SBP_bac_8 200 iaaaqka.gkklgaivp...kqg...sfaggkglavpknaknedlaAldFlkwltspenqaalae.ktgyipvnksaalspevkkdpa 279
                 ++  q a ++++++ +p   k g   ++a   ++    n +n++   ++++++l+++ +q   +   +g++   + a++++++k+++a
  CTQ26098.1 219 MNLSQMArNPNVKIFWPaddK-GersALALPYTIGLVQNGPNSEN-GKKLINFLLDKPAQSSVSArSWGLPVRSDVAPDDANFKAAKA 304
                 **9995559********5541.2454777777899*********7.****************99966666666666667999998765 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   1.4     1e-21   4.5e-18      12     222 ..      40     277 ..      25     282 .. 0.88

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 1e-21
                 HHHHHHHHHHHHH---EEEEESSHHHHHHHHHHH.....-SEEEESSH.HHHHHHHHGGGGG.............GG-EEEEEEEEEEEESTT-.TT-- CS
  SBP_bac_11  12 alrelaaaFeahtgvkvevsaggsgklarqiadga...rpDvwipassawlellaaaglvqa.............esavplassplviavpkgn.pkki 93 
                 +++   aaF+++tg+kv++ +ggsg++++++a+++   ++Dv++   +  ++++a+++l++              ++++pl+ + l ++++       +
  CTQ26098.1  40 WYQSQFAAFTKATGIKVQYVEGGSGAIVERLAKERtnpQADVLVTVPP-FIQRAAKEQLLATftpqgsaqipganDRYAPLVNNYLTFIYNSQLlKSAP 137
                 56666799***********************8888889*******966.99******99999999*************************999945599 PP

                 -SHHHHHHSS-..-EEEE--T-TTTTHH.H.HHHGGG--....HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEHHHHH...HSTTSSEEEE-- CS
  SBP_bac_11  94 kgwadLlkpgl..klavadPttspsGlaal.alleaaga....qellkalekkvvklgessrqlltaveageadagivyeseakaa.engdkleavylp 184
                  +w+dLl+     kl +++P +++ G+a++ ++++ +g+     ++l +l+ + v+ + s++ l++ v+ ge  ++ + ++  + + ++ ++++++ + 
  CTQ26098.1 138 ASWQDLLDSRYknKLQYSTPGQAGDGTAVMlQAFHSLGGkdagFAYLGKLQANNVGPSASTGKLTALVNKGELYVANGDLQMNLSQmARNPNVKIFWPA 236
                 9********98779*************88889***99998888777888999999999999***********999999999554454899999999888 PP

                 TTT....--...EEEEEEEE-TT--HHHHHHHHHTTSHHHHH CS
  SBP_bac_11 185 egl....nldpldypaavlkkaakreaAraFlafLrspeaqa 222
                 ++      l  l+y+++++++++++e  +++++fL+ ++aq 
  CTQ26098.1 237 DDKgersAL-ALPYTIGLVQNGPNSENGKKLINFLLDKPAQS 277
                 776565544.79****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2721.79
//
Query:       CTQ26099.1  [L=239]
Description: putative transcriptional regulator of 2-aminoethylphosphonate degradation operons [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-35  119.7   0.3    1.3e-34  119.1   0.1    1.4  2  UTRA       UTRA domain
    2.9e-20   71.7   0.0    4.9e-20   70.9   0.0    1.4  1  GntR       Bacterial regulatory proteins, gntR family
     0.0083   15.9   0.0      0.019   14.7   0.0    1.5  1  HTH_DeoR   DeoR-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.017   15.1   0.0      0.032   14.2   0.0    1.4  1  HTH_Crp_2  Crp-like helix-turn-helix domain
      0.078   13.5   0.0       0.23   12.0   0.0    1.7  2  HTH_27     Winged helix DNA-binding domain
       0.08   12.6   0.0       0.13   12.0   0.0    1.3  1  HTH_41     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> UTRA  UTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.5   7.4e+03     117     139 ..      46      68 ..      42      68 .. 0.75
   2 !  119.1   0.1   4.2e-38   1.3e-34       1     140 [.      94     232 ..      94     233 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.5
                 EEEEEETTSCEEEEEEEEEETTT CS
        UTRA 117 ervtydadgrpveysrsyyrgdr 139
                 +r+t  +    +e s  +yr+dr
  CTQ26099.1  46 TRITVRESLAQLEASGVIYRADR 68 
                 67777777777888888888887 PP

  == domain 2  score: 119.1 bits;  conditional E-value: 4.2e-38
                 CCCCSEEEEEEEEEEEE--HHHHHHHTS-TTSEEEEEEEEEEETTEEEEEEEEEEEGGGTTTCHHHHHHCS-HHHHHHHHHTTSEEEEEEEEEEEE--H CS
        UTRA   1 aqglepktevlsleevpasaeiaeaLglpagepvlrieRlrladgepvaleesylpaslvpdlleedleegslyayleerlgvpitraeetiearlada 99 
                 +qg+epkt +l+ +    + ++++ L l++ ++v+ ++Rlr+adg+pv+++e++  +++vp+ll +dl +gsl+++++ ++ + +t+ + ++ ++ +++
  CTQ26099.1  94 EQGREPKTVLLDGRLAAVPLDVMAPLALQPFDQVYLLTRLRYADGRPVCYCENHCLPARVPELLRHDL-NGSLTEIYQTHYDLIYTSMHLSFYPTSMPP 191
                 69******************************************************************.****************************** PP

                 HHHHHHTSTTT-EEEEEEEEEEETTSCEEEEEEEEEETTTE CS
        UTRA 100 eeaelLgisagspvLviervtydadgrpveysrsyyrgdrf 140
                 + ae+Lg+ +g p+L+++r++yd++gr+++y+++y+r+d  
  CTQ26099.1 192 QAAEALGVMEGRPALLLRRLNYDQHGRILDYDIEYWRHDSL 232
                 **************************************976 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   1.6e-23   4.9e-20       2      64 .]      11      73 ..      10      73 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 1.6e-23
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y +++++L ++I +g l+ GdkLPsereL+a f+++r tvRe+L +Lea g++ r ++rG+fV
  CTQ26099.1 11 YLMIKAQLQARIQNGALKSGDKLPSERELCALFNTTRITVRESLAQLEASGVIYRADRRGWFV 73
                889***********************************************************9 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   6.4e-06     0.019      19      46 ..      38      65 ..      31      67 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.4e-06
    HTH_DeoR 19 elvellgvSeaTiRRDLneLeeqglltR 46
                el++l++++  T+R  L++Le++g++ R
  CTQ26099.1 38 ELCALFNTTRITVRESLAQLEASGVIYR 65
                9*************************99 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.1e-05     0.032      23      56 ..      35      69 ..      16      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
                HHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE.TEE CS
   HTH_Crp_2 23 tqeelAsmlGltretvsrilseLkreglisr.grr 56
                + +el ++ ++tr tv   l++L+  g+i r  rr
  CTQ26099.1 35 SERELCALFNTTRITVRESLAQLEASGVIYRaDRR 69
                678999***********************963333 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.5e-05      0.23      20      62 ..      35      73 ..      25      75 .. 0.89
   2 ?   -3.0   0.0       3.6   1.1e+04      50      62 ..     132     143 ..     129     143 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.5e-05
      HTH_27 20 kladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrv 62
                ++++lc   n++ +++ +sl +L++ G++    ++adrr  +v
  CTQ26099.1 35 SERELCALFNTTRITVRESLAQLEASGVI----YRADRRGWFV 73
                469**************************....9999998777 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.6
      HTH_27  50 rtgdeadrrekrv 62 
                 r ++ ad+r++++
  CTQ26099.1 132 RLRY-ADGRPVCY 143
                 4455.69999987 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.4e-05      0.13       1      42 [.      28      70 ..      28      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.4e-05
      HTH_41  1 kvGdRlktIeelakeleLSvGlvQkALklLeddkais.lerrG 42
                k Gd+l++  el+  +   + +v   L  Le++++i+   rrG
  CTQ26099.1 28 KSGDKLPSERELCALFNTTRITVRESLAQLEASGVIYrADRRG 70
                68**********************************8234555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 2057.64
//
Query:       CTQ26100.1  [L=76]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.35   11.0   2.3       0.76    9.9   2.2    1.7  1  FLYWCH    FLYWCH zinc finger domain


Domain annotation for each model (and alignments):
>> FLYWCH  FLYWCH zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.2   4.2e-05      0.76      13      35 ..      23      46 ..      22      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 4.2e-05
                ETTEEEEEEEE-.SS-EEEEEGGG CS
      FLYWCH 13 yngyrYvrnkkr.ngktyWrCsky 35
                y+ y Y+ +k   ++k  WrC+k+
  CTQ26100.1 23 YQIYSYHGDKAGkGSKEMWRCNKK 46
                77799*****9988*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 659.65
//
Query:       CTQ26101.1  [L=367]
Description: 2-aminoethylphosphonate--pyruvate transaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-25   90.2   0.0    1.6e-25   89.9   0.0    1.0  1  Aminotran_5    Aminotransferase class-V
    4.2e-06   26.2   0.0    2.8e-05   23.4   0.0    1.9  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.0   1.8e-29   1.6e-25      45     317 ..      40     307 ..      37     336 .. 0.86

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 1.8e-29
                  HHHHHHHHHHHHT-STGGGEEEESSHHH.HHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEE CS
  Aminotran_5  45 veearekvaelinaeseeeiiftsGtte.ainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektk 141
                  v+++r+++ +l   ++ ++ + ++G+++ ++++v+ s+   + ++ ++++++++  +++  + e+a+  g+  + +   e  + d  ++e+ l+++++
   CTQ26101.1  40 VQTIRQQLVQLATPADGYTAVLLQGSGSySVEAVLGSV---IGEQGKVLIVSNGAYGAR--MIEMAQLMGIACHPYDCGEVSRPDAAAIEQILQNDPA 132
                  67899999999999999*********************...9*****************..888899**************************86666 PP

                  E..EEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTT.TTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEET CS
  Aminotran_5 142 l..vaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghK.llgPtGiGvlyvrkellekleplllggemveevsl 236
                  +  +a+ h +++tG+++p+ee+++lak+++  ++vDa +++g ip+d+++l++D l +s+ K + g +G  ++++r++ l +    ++ +  ++   +
   CTQ26101.1 133 IthIAMVHSETTTGMLNPIEEVAELAKRYDKRYIVDAMSSFGGIPLDIAALNIDYLISSANKcIQGVPGFAFVIAREAELAAC---KGRSRSLSLDLY 227
                  5116678999*******************************************************************777777...555554444444 PP

                  .TEEEEHCTTGGGS.SS--HHHHHHHHHHHHHH.HCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEET CS
  Aminotran_5 237 .eettfaeapskfeaGTpnvagiiglgaaleyl.eeigleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfk 317
                   + + ++++  k +  T ++  + ++++al+ l +e+g++a +++ ++ + +l++++++l+   l+  d+  +++ i++f  +
   CTQ26101.1 228 aQWRCMEDNHGKWRF-TSPTHTVLAFAQALKELaQEGGVSARHQRYRNNQRRLVAGMRALGFRPLL--DDSLHSPIITAFYSP 307
                  355557788888886.9**************999**************************999994..456777777777654 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   3.2e-09   2.8e-05      71     360 ..      61     356 ..      35     359 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.2e-09
                    EEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-.THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B- CS
  Aminotran_1_2  71 vvvgsGagaliealifllklnpgdeilvpdpty.asyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtva 165
                    ++ gsG+ ++ ++l  ++  + g++ +v++  y a ++++++l+g+++++y +   e  + d+ a+e+ l+++p     +  i+       tG + 
     CTQ26101.1  61 LLQGSGSYSVEAVLGSVI-GEQGKVLIVSNGAYgARMIEMAQLMGIACHPYDCG--EVSRPDAAAIEQILQNDP----AITHIAMVHSETTTGMLN 149
                    556899999999999999.69999988888888357*****************9..999************965....334455545555789999 PP

                    -HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTT.EEEEEESSSTT.SSGGG-EEEEEEEH..................HHHH CS
  Aminotran_1_2 166 tleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepn.llivgslsKaf.GlaGeRvGyilgna..................avvs 241
                    + ee+ +l   ak+y  + +vD + + +    ld         ++ n + + +s  K   G++G   +++++ +                  a  +
     CTQ26101.1 150 PIEEVAEL---AKRYDKRYIVDAMSSFGGIP-LD--------IAALNiDYLISSANKCIqGVPG--FAFVIAREaelaackgrsrslsldlyAQWR 231
                    99999999...****99*****886655554.33........2223335788899998889999..899999777999999999999999998888 PP

                    HHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEECCS......CSSEEEEEETHHCHHHHHHHHHHTCT CS
  Aminotran_1_2 242 qlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasq......sgmflltdlsaetakelskkLleevg 329
                    ++++ +  + +  ++++  a a+al+   ++   ++++ qr+ ++ ++l++++++lg+  l  +      ++ f+  d ++++ + +++kL ++ g
     CTQ26101.1 232 CMEDNHGKWRFtsPTHTVLAFAQALKELAQEG-GVSARHQRYRNNQRRLVAGMRALGFRPLLDDslhspiITAFYSPDAPQYRFHTFYQKLKDQ-G 325
                    88888887777669999999999999877654.***********************77665433110002566666677777999999999999.7 PP

                    EEEEEGGGGTSTTEEEEEC.TTS-HHHHHHHH CS
  Aminotran_1_2 330 vyvtpgtsftvpgrlRitv.Aglteeeleelv 360
                     ++ pg+    + ++Ri     + +++++ l+
     CTQ26101.1 326 FVIYPGKVSQ-SDCFRIGNiGEVYDADITALL 356
                    7777744333.778888655555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2736.94
//
Query:       CTQ26102.1  [L=269]
Description: Phosphonoacetaldehyde hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-05   22.9   0.0    0.00014   22.3   0.0    1.4  1  Hydrolase       haloacid dehalogenase-like hydrolase
     0.0032   17.6   0.0     0.0059   16.7   0.0    1.4  1  HAD_2           Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.18   12.2   0.0        0.3   11.5   0.0    1.4  1  AP4E_app_platf  Adaptin AP4 complex epsilon appendage platfor


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.3e-08   0.00014       3     205 ..       6     193 ..       4     198 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.3e-08
                 EEEEESBTTTBCHH.HHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHH....HCHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttge.psvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltal....dippdlgaaigsaqsq 96 
                 ++++D  GT ++      ++++v+a                     ++a ++++ l++ ++         gk + ++al     + + ++a+ g a ++
  CTQ26102.1   6 ALILDWAGTTVDFGsFAPTQIFVEA--------------------FRQAFDIEITLEEARV-----PMGLGKWQHIEALgklpSVDSRWQAKFGRAMTA 79 
                 6677777777754436666666666....................5666666666666666.....666666666666644453334444444444333 PP

                 CHHHHHHTT.HHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGE.SEEEEHHCES.STTTSHHHHHHHHHHHTST.G CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.x RF
   Hydrolase  97 grtvallqa.ralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyf.daviasdiet.vakpspegkvaaireLqgk.p 190
                 + + a+  a   l++ ++ d   +  ++++++a+L+a+g++++ ++g  +   e++   +  + y  d+ +a+d+ +  + p p++ ++ +  L+++  
  CTQ26102.1  80 ADIDAIYAAfMPLQIAKVVDFSAPIAGVVDTIATLRAKGLKIGSCSGYPRPVMEKLVPAAAaQGYApDHWVATDDLAaGGRPGPWMALQNVITLGIDdV 178
                 333333311235566666677778**************************99999999977788999**********99999*************5559 PP

                 GGEEEEESSHHHHHH CS
                 xxxxxxxxxxxxxxx RF
   Hydrolase 191 eevamVGDgvnDaaa 205
                 ++++ V+D + +++ 
  CTQ26102.1 179 AHCVKVDDAAPGISE 193
                 999999999877765 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   9.8e-07    0.0059      19     176 ..      26     202 ..      13     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9.8e-07
       HAD_2  19 afnelleeygls.elseeelrkliglslrellrklgeseeeee.................kieellrkyneekkkkevkpydgvkelLeeLkeagyklg 99 
                 +f e++++  ++ e+++ee r  +gl   + ++ lg+   +++                 +++ ++    ++   ++  p+ gv +++ +L+++g+k+g
  CTQ26102.1  26 IFVEAFRQA-FDiEITLEEARVPMGLGKWQHIEALGKLPSVDSrwqakfgramtaadidaIYAAFMPLQIAKVV-DFSAPIAGVVDTIATLRAKGLKIG 122
                 444444333.444899********************99998889999*****9999555444444444444555.5*********************** PP

       HAD_2 100 ivTsksreaveekleqlgiesyF.dvivtsed.vekkKPdpeviekaleklklkk.eeviyvGDsptDieaakkagikvi 176
                   +   r ++e+ + +   + y  d+ v ++d + +  P p + ++ +  l+++  ++++ v D   +i  + +ag+ ++
  CTQ26102.1 123 SCSGYPRPVMEKLVPAAAAQGYApDHWVATDDlAAGGRPGPWMALQNVITLGIDDvAHCVKVDDAAPGISEGLHAGMWSV 202
                 ********************998344444444145569******999999999873567779999999999999999766 PP

>> AP4E_app_platf  Adaptin AP4 complex epsilon appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     5e-05       0.3       2      37 ..     204     239 ..     203     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5e-05
  AP4E_app_platf   2 ltisteeFgklWlslsserkqklkssqvstlselka 37 
                     l +s +eFg++W++++   k +++ ++++ +++l a
      CTQ26102.1 204 LAVSGNEFGATWEEYQAMSKEEIATRRERAADKLYA 239
                     568899******************999999888843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2182.55
//
Query:       CTQ26103.1  [L=397]
Description: transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-30  105.8  61.8    2.2e-29  102.5  52.9    2.0  2  MFS_1     Major Facilitator Superfamily
     0.0038   17.2   1.6      0.012   15.6   1.6    1.9  1  DUF679    Protein of unknown function (DUF679)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5  52.9   2.5e-33   2.2e-29       1     337 [.      25     344 ..      22     348 .. 0.83
   2 !   10.3   3.0   2.7e-05      0.24     109     172 ..     329     391 ..     325     397 .] 0.85

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 2.5e-33
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlg 98 
                 +++++++ ++  ++  ++l+  +a dlgis+  +g  +t+ a++a+++sl++ +++ +  rr  v+l++lll++++ ll +fa s++lll++r+  Gl+
  CTQ26103.1  25 VAFCVACLITVEFLPVSLLT-PMALDLGISEGMAGQSVTTTAFVAMFSSLFITSVIGKTDRRYvVILFSLLLTFSC-LLVSFADSFTLLLLGRACLGLA 121
                 46788888888888888888.8*****************************************9999999999999.8888855555************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplv 197
                  g++++++a+l+ +++p +  ++a++++ +++s++ +++++lg++l  ++gWr vf  +a++++l+ +   ++l + p+ ++ ++++++          
  CTQ26103.1 122 LGGFWAMSASLTMRLVPMRVVPKALSIIFGAVSIALVIAAPLGSFLGGLIGWRNVFNGAAVMGVLCTL---WVLKALPSLPGESASQQQ---------- 207
                 ******************************************************************99...999999999999999999.......... PP

       MFS_1 198 pawkallkdpvlwillialllfffgfsg.lltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglal 293
                 + +++l+++ v+   ++a++++f+g ++ +++  p+y ++  g++  gl l++l +++++++g     l++ l++r + + +l +a l+l+++a++l+l
  CTQ26103.1 208 NMFGLLKRPGVMA-GMCAIFMAFAGQFAfFTYIRPVY-MTLAGFDvdGLTLVLLSFGIASFIG---TSLSSVLLKR-SVKAALAIAPLVLTACAAALVL 300
                 6788999999664.66666666666666455555778.*******887666665566666666...8899999988.5555666666666666666666 PP

       MFS_1 294 lavtssavllllvlvliGfglgfvfpsllalasdla..ppeeagta 337
                 ++ +  ++++  v +++Gf+++++ + + +++++++   +e+ag++
  CTQ26103.1 301 WGES--KIVASTVAIIWGFAFALIPVGWSTWITRSLsdQAEKAGSI 344
                 6666..8888889***********8888888888773323555554 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 2.7e-05
       MFS_1 109 liadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll 172
                 +i++  ++ +  +a ++  a ++l+  +g+++gg+ +++lg  ++ ++ +i++l+ ++l+++ +
  CTQ26103.1 329 WITRSLSD-QAEKAGSIQVAVIQLANTCGAAVGGIALDHLGLLSPLVLSGILMLFTGLLVAAKV 391
                 56666666.7788999999**************************************9877655 PP

>> DUF679  Protein of unknown function (DUF679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.6   1.4e-06     0.012      14      82 ..      62     131 ..      60     161 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-06
      DUF679  14 tvlafq.aLspsftneGeCetvnrlltaaLlallavscvllsfTDsivge.dgkvyYgvatlkglkvfnke 82 
                 t+ af  ++s++f  +   +t  r++++++ +ll++sc+l+sf Ds++    g+ + g+a+ +g++ ++++
  CTQ26103.1  62 TTTAFVaMFSSLFITSVIGKTDRRYVVILFSLLLTFSCLLVSFADSFTLLlLGRACLGLAL-GGFWAMSAS 131
                 5556651556666667677889999999999****************97548999999985.788877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2713.54
//
Query:       CTQ26104.1  [L=119]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-40  138.2   0.8    1.5e-40  138.0   0.8    1.0  1  RelE      RelE toxin of RelE / RelB toxin-antitoxin system


Domain annotation for each model (and alignments):
>> RelE  RelE toxin of RelE / RelB toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   0.8   8.5e-45   1.5e-40       1     120 []       1     113 [.       1     113 [. 0.99

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 8.5e-45
        RelE   1 mrvfktkwfarwarkekisdeeLleaveevekGlidadlGggviKkRvarkgeGksggyRtlvlakkgeraffvygfaKsdkaniskkelkalkklake 99 
                 mr+fktkwfar a++++isd+eL++a++++ +G++  dlGggv+KkR++++      ++R+++l+k++e++f+++++aK+d+ani+++el+ +++lak+
  CTQ26104.1   1 MRIFKTKWFAREASSHGISDDELYQAIQSALQGKVV-DLGGGVYKKRLNKN------RDRAIILTKSAEYWFYTFLYAKQDMANINHRELMGFRELAKH 92 
                 9**********************************9.**************......9***************************************** PP

        RelE 100 llalseeqleklikkgelvev 120
                 +++lsee+ ++l+k++elve+
  CTQ26104.1  93 YANLSEEKTTALVKSKELVEI 113
                 *******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 930.37
//
Query:       CTQ26105.1  [L=107]
Description: XRE family transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-08   34.2   0.0    2.7e-08   33.7   0.0    1.2  1  HTH_3           Helix-turn-helix
    6.8e-06   26.3   0.0    9.1e-06   25.9   0.0    1.2  1  HTH_31          Helix-turn-helix domain
    7.6e-05   22.8   0.0    9.4e-05   22.5   0.0    1.1  1  MqsA_antitoxin  Antitoxin component of bacterial toxin-antito
     0.0022   18.0   0.0     0.0031   17.5   0.0    1.1  1  HTH_19          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.016   15.0   0.0    1.1  1  DUF4447         Domain of unknown function (DUF4447)
      0.037   13.8   0.0      0.069   13.0   0.0    1.4  1  HTH_23          Homeodomain-like domain
       0.13   12.1   0.0       0.21   11.5   0.0    1.4  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.1e-11   2.7e-08       1      45 [.      52      96 ..      52      98 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.1e-11
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkkla 45
                +k+lR+ql+ sq  +A++l+ s+st++++E G  +Ps   lk+l+
  CTQ26105.1 52 IKALREQLNVSQPVFARYLNTSVSTVQKWETGAKRPSGMSLKLLS 96
                8*******************************888**99999986 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   3.6e-09   9.1e-06       6      45 ..      52      90 ..      50     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.6e-09
      HTH_31  6 LralReraGLsqeevAerlgvsestlsrlEqGrrgrpspa 45
                 +alRe+ ++sq   A+ l+ s+st+ ++E+G+  rps  
  CTQ26105.1 52 IKALREQLNVSQPVFARYLNTSVSTVQKWETGAK-RPSGM 90
                689*******************************.8*975 PP

>> MqsA_antitoxin  Antitoxin component of bacterial toxin-antitoxin system, MqsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   3.7e-08   9.4e-05      56     123 ..      32     101 ..      22     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.7e-08
  MqsA_antitoxin  56 ellefrkkvnaelv..dpafiarvrkkleldqreaaeifGgGvnafsryekGkvrpplalvkllklldrh 123
                     ++++f ++  ++++  +p +i+ +r++l+++q   a+ + + v +  ++e+G  rp+   +kll ++++h
      CTQ26105.1  32 TMRHFDESCLGSVAalQPIEIKALREQLNVSQPVFARYLNTSVSTVQKWETGAKRPSGMSLKLLSVVQKH 101
                     55666666555444359****************************************************9 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.2e-06    0.0031       4      54 ..      52     103 ..      51     105 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.2e-06
      HTH_19   4 LkeaReelgltqeelaerlgisrskisaiEngkkdvps..aelllkiaealgi 54 
                 +k++Re+l+ +q   a+ l +s s   ++E+g k  ps  + +ll+++++ g+
  CTQ26105.1  52 IKALREQLNVSQPVFARYLNTSVSTVQKWETGAK-RPSgmSLKLLSVVQKHGL 103
                 79******************************88.999777777888888886 PP

>> DUF4447  Domain of unknown function (DUF4447)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   6.1e-06     0.016       5      57 ..      45      96 ..      41     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.1e-06
                ----HHHHHHHHHHTT--HHHHHHHHTS-HHHHHHHHTTSS---HHHHHHHHH CS
     DUF4447  5 iglnaieikylrqslglsaaqvgeltkaseedvlaweageaeapelaqkklle 57
                + l+ ieik lr+ l++s    ++  ++s + v  we+g+++ ++++ k ll 
  CTQ26105.1 45 AALQPIEIKALREQLNVSQPVFARYLNTSVSTVQKWETGAKRPSGMSLK-LLS 96
                57899**********************************9998887765.444 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.7e-05     0.069      11      38 ..      52      81 ..      51      90 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
      HTH_23 11 llllae..GlsvreIAreLgvsrrTvyrwl 38
                +++l+e    s++  Ar L+ s +Tv++w 
  CTQ26105.1 52 IKALREqlNVSQPVFARYLNTSVSTVQKWE 81
                567776799999*****************4 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.2e-05      0.21      10      34 ..      62      86 ..      52      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.2e-05
  YdaS_antitoxin 10 gqkaLAealgvsqqaVsqWlkgkkq 34
                    +q+ +A+ l++s ++V++W  g k+
      CTQ26105.1 62 SQPVFARYLNTSVSTVQKWETGAKR 86
                    89*****************888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 749.24
//
Query:       CTQ26106.1  [L=150]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-69  231.9   0.1    2.8e-69  231.7   0.1    1.0  1  DUF1198   Protein of unknown function (DUF1198)
     0.0071   16.5   0.0      0.014   15.5   0.0    1.4  1  FxsA      FxsA cytoplasmic membrane protein


Domain annotation for each model (and alignments):
>> DUF1198  Protein of unknown function (DUF1198)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.7   0.1   3.1e-73   2.8e-69       1     143 []       1     143 [.       1     143 [. 0.99

  Alignments for each domain:
  == domain 1  score: 231.7 bits;  conditional E-value: 3.1e-73
                 XXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHT--THHHHHHHHTS-HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHTTTT---HHHHHHHHHHHH CS
     DUF1198   1 miWlilatlvvvfivGfrvltsdtrraikrlserLkiepvyveslldemGktageefvrylsrgneehlqnaaqvlliyqvfivdeseenlerWrrllr 99 
                 miW+ latlvvvf+vGfrvltsd+rrai+rlserL i+pv++es++d++Gktag+e++ryl+r+ne+hlqnaaqvlli+qv+ivd+se+nl++W+rl++
  CTQ26106.1   1 MIWIGLATLVVVFVVGFRVLTSDSRRAIRRLSERLGITPVPLESMIDQLGKTAGNEYLRYLERPNEAHLQNAAQVLLIWQVAIVDASEKNLHYWYRLMQ 99 
                 9************************************************************************************************** PP

                 HTT------HHHHHHHHHHTGGG---HHHHHHHHHHHHHHHS-S CS
     DUF1198 100 karlaaelseeqvrlalgflrelepdaeelaafrrrynelfape 143
                 karlaa+++e+q+rla+gflrel+pd+++l+++++ryn+lf pe
  CTQ26106.1 100 KARLAAPITEAQIRLAQGFLRELDPDMSDLHNLQQRYNDLFLPE 143
                 *****************************************986 PP

>> FxsA  FxsA cytoplasmic membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.5e-06     0.014      24      72 ..       3      51 ..       2      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-06
        FxsA 24 latllllvltallGallvrrqgrralrrlqeklaqgelpaeelldglll 72
                +  l+ lv+ +++G+ ++ +  rra+rrl e+l  + +p e+++d+l  
  CTQ26106.1  3 WIGLATLVVVFVVGFRVLTSDSRRAIRRLSERLGITPVPLESMIDQLGK 51
                667899*************************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1166.67
//
Query:       CTQ26107.1  [L=463]
Description: hexose phosphate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-33  114.3  30.4    5.8e-33  114.3  30.4    1.8  2  MFS_1       Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.6    9.5  19.4        1.4    9.6   1.8    4.9  5  PrgI        PrgI family protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3  30.4   6.5e-37   5.8e-33       1     347 [.      35     397 ..      35     403 .. 0.81
   2 ?   -0.0   0.0     0.037   3.3e+02     146     182 ..     418     455 ..     405     461 .. 0.50

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 6.5e-37
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fa...sslwlllvlrvl 94 
                 ++++++ ++l r ++++a    + +++g+s +++g++  +++++++v+  ++++ +d    + +l ++l+l+a+++l ++  ++   +sl+l++++ +l
  CTQ26107.1  35 VFIGYLTMYLIRKNFNIAQN-DMISTYGLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFMLILSAICMLGFSasMGagsTSLFLMIAFYAL 132
                 69999*********999999.999*********************************989999************4444444426855566******** PP

       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslg..Wravfyilaivsllafvlfllllpeepperkrkspkeee.. 188
                 +G++++++ + +++ i++w+p+++rg  +g+++++ +lG + +++++ + a  ++     ++f++  i++l+++ ++l +   + pe+    ++ee+  
  CTQ26107.1 133 SGFFQSTGGSCSYSTITKWTPRRKRGTFLGFWNISHNLGGAGAAGVALFGAnYLFDghVIGMFIFPSIIALIVGFIGLRYG-SDSPESYGLGTAEELfg 230
                 ****************************************88888887777555554466669999999999988655555.55555555555555568 PP

       MFS_1 189 .......kgtgpaplvp...awkallkdpvlw.illialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrr 274
                        k t++ ++++     +++lk++v+w +++  ++l   +  g+ +++++y+ + l+ls   ++++   + l+ ++++++ ll+g+lsd l + 
  CTQ26107.1 231 eaiseedKETEENAMTKwqiFVEYVLKNKVIWlLCFSNIFLYV-VRIGIDQWSTVYAFQELKLSkeVAIQG---FTLFEVGALVGTLLWGWLSD-LANG 324
                 8888888444444444455577888888888755555555553.6666****************9532555...55555555555*********.5778 PP

       MFS_1 275 rrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagsl 347
                 rr l+a+++l+l+ + l +  ++s++ ++l++l+ +Gf ++  + ++ ++a+ ++p+++ g+a g+ +t+ +l
  CTQ26107.1 325 RRALVACIALALIIATLGVYQHASNQYVYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGAADGIKGTFAYL 397
                 9999**********************************777779*****************999988877664 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.037
       MFS_1 146 sslgWravfyil..aivsllafvlfllllpeepperkrk 182
                  + gW ++f +l  a+v++++ +++++ ++ee++ r+ k
  CTQ26107.1 418 GLTGWAGTFAALdaAAVGCIC-LMAIVAIFEERKIRREK 455
                 355677776664113344443.23445555555444444 PP

>> PrgI  PrgI family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.8   0.00016       1.4      13      82 ..      58     130 ..      44     140 .. 0.73
   2 ?    0.8   0.0     0.091   8.2e+02      31      64 ..     174     208 ..     168     240 .. 0.55
   3 ?    7.7   1.2   0.00065       5.9      10      73 ..     294     352 ..     287     361 .. 0.71
   4 ?    0.3   2.1      0.13   1.2e+03      24      61 ..     331     365 ..     329     396 .. 0.46
   5 ?   -0.2   0.1      0.19   1.7e+03      44      61 ..     429     446 ..     402     455 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00016
        PrgI  13 iffgLtlRQliflvlallvaiglylllrafl....eelasvlvillavPvaalgfykkdglplekylkaiikfk 82 
                    gL++ Ql++++l++ + +g+   l +++    ++ + + ++l+   +++lgf +  g   ++ l+ +i+f+
  CTQ26107.1  58 STYGLSMTQLGMIGLGFSITYGVGKTLVSYYadgkNTKQFLPFMLILSAICMLGFSASMGA-GSTSLFLMIAFY 130
                 4579**************9999988888888899655555566666667889999876666.555555555555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.091
        PrgI  31 vaiglylllrafl.eelasvlvillavPvaalgfy 64 
                  a+g++l+  ++l +   + ++i+ ++ + ++gf+
  CTQ26107.1 174 GAAGVALFGANYLfDGHVIGMFIFPSIIALIVGFI 208
                 34455555555552222233344444444555666 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00065
        PrgI  10 eekiffgLtlRQliflvlallvaiglylllrafleelasvlvillavPvaalgfykkdglplek 73 
                 +e  + g+tl +++ lv++ll +++  l+  +     a+v++i+la+ +a lg+y+ +  +   
  CTQ26107.1 294 KEVAIQGFTLFEVGALVGTLLWGWLSDLANGRR----ALVACIALALIIATLGVYQ-HASNQYV 352
                 566677888888888888888777776664444....48****************4.4433444 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.13
        PrgI  24 flvlallvaiglylllrafleelasvlvillavPvaal 61 
                 +++lal+   ++ l +++  +++ ++l+ l a+ + ++
  CTQ26107.1 331 CIALALI---IATLGVYQHASNQYVYLASLFALGFLVF 365
                 4444433...2222222222333344444444443333 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.19
        PrgI  44 eelasvlvillavPvaal 61 
                  ++a+v +i+l++ va++
  CTQ26107.1 429 LDAAAVGCICLMAIVAIF 446
                 355566666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3534.76
//
Query:       CTQ26108.1  [L=442]
Description: membrane protein regulates uhpT expression [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-47  162.3  41.8    1.5e-47  162.3  41.8    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3  41.8   8.2e-52   1.5e-47       1     352 [.      35     396 ..      35     397 .. 0.89
   2 !   14.7   8.1   6.1e-07     0.011     107     178 ..     366     437 ..     363     442 .] 0.83

  Alignments for each domain:
  == domain 1  score: 162.3 bits;  conditional E-value: 8.2e-52
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlg 98 
                 ++l+++l +++r  +++a+p++la++  ++ s igll+tl++++++++ ++ G +sdr  +r ++ lgl+++++   +l+ f+sslw++++l++l +++
  CTQ26108.1  35 IWLGYALFYFTRKSFNAAVPEILASN-VLTRSDIGLLATLFYITYGLSKFFSGIVSDRSDARYFMGLGLIATGVV-NILFgFSSSLWAFALLWALNAFF 131
                 699*****************866666.459*********************************************.55555889999************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepperkrkspkeee........ 188
                 +g++ p++a l+++w++++erg   +l++++ ++G +l p++ g+ a ++gWra + i++ +++la++ l  ++ ++++p+    + + ++        
  CTQ26108.1 132 QGWGSPVCARLLTAWYSRTERGGWWALWNTAHNVGGALIPMVVGAAALHYGWRAGMTIAGCLAILAGLyL--CWRLRDRPQAVGLPAVGDWrhdaleia 228
                 *******************************************************************955..******************999999999 PP

       MFS_1 189 kgtgpaplvp...awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr..lgrrrrlllall 282
                 +++++a+++    + +++l++p++w+l ++ +l+ ++ +++  +  ly+ e+lg + l++a  ++ ++ l+g+i+al+ag+ sd+   g+r +++l+++
  CTQ26108.1 229 QQQEGAGMSRkaiLTRYVLANPYIWLLSLCYVLVYVVRAAINDWGNLYMSETLGVD-LVTANSAVTMFELGGFIGALVAGWGSDKlfNGNRGPMNLIFA 326
                 5555555555666779999999999777777777878999****************.9999999*********************77566777777777 PP

       MFS_1 283 llllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 +++l+++g ++l ++ s+v+ ++ +++ Gf  +g  + ++  +a++   +e+ag+a+g+++++ +lg++l+
  CTQ26108.1 327 AGILLSVGGMWLMPFASYVMQAACFFTTGFfVFGP-QMLIGMAAAECSHKEAAGAATGFVGLFAYLGASLS 396
                 7777777777777777**************55555.56666666666668******************986 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6.1e-07
       MFS_1 107 aaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                 + ++a+ ++ke  g a+g++++++ lGa + g +l+ ++   + W++ f+++ai++ ++++l l +l + +p+
  CTQ26108.1 366 GMAAAECSHKEAAGAATGFVGLFAYLGAsLSGWPLAQVMD-IWHWTGFFVVIAIAAGISALLLLPFLNAQAPR 437
                 5578899999******************666699999997.99******************766666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 3689.72
//
Query:       CTQ26109.1  [L=500]
Description: sensory histidine kinase in two-component regulatory sytem with UhpA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-15   56.0   1.9    4.1e-15   56.0   1.9    2.6  2  HisKA_3    Histidine kinase
    2.8e-12   46.4  45.2    2.3e-11   43.4  45.2    2.3  1  MASE1      MASE1
    2.3e-06   28.1   0.0    1.4e-05   25.6   0.0    2.1  1  HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like A
     0.0099   15.1   0.4      0.026   13.7   0.4    1.7  1  DUF2232    Predicted membrane protein (DUF2232)


Domain annotation for each model (and alignments):
>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   1.6     0.025   1.1e+02      27      64 ..     260     298 ..     253     302 .. 0.62
   2 !   56.0   1.9   9.2e-19   4.1e-15       2      68 .]     305     370 ..     304     370 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.025
                 HHHHT.TT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
     HisKA_3  27 akrll.ekdpekaaeqlreieelarealqevRrllhnLr 64 
                 ++++l     ++  ++lre+++ +++ l+  Rrl ++L 
  CTQ26109.1 260 LAQSLtGLLLGAGIQRLRELNQSLQSELARNRRLAERLL 298
                 444442222336677888888888888888888877775 PP

  == domain 2  score: 56.0 bits;  conditional E-value: 9.2e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH CS
     HisKA_3   2 RariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLrpaal 68 
                 R+ +ARELHD++gq+++ai+ q++ ++rl+ +d++ +++  + ie+l+ + ++ vRrll++Lrp++l
  CTQ26109.1 305 RRDVARELHDDIGQTITAIRTQAGIVQRLA-PDNASVRQSGQLIEQLSLGVYDSVRRLLGRLRPRQL 370
                 999***********************9755.7889*****************************986 PP

>> MASE1  MASE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4  45.2   5.2e-15   2.3e-11       5     298 ..      14     275 ..      11     277 .. 0.81

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 5.2e-15
       MASE1   5 llllyallialglslalalvssggvplW.lPsGlalaalllfgrrgwpgillaavlasislfllfagnlllalaiaavntleallgalllrrllpsrnr 102
                 +++++a++++ ++s +l lv     +++ +P Gl+l+++l ++r +wp++l   +l+          +l++++a+a   +l+      ll ++l sr r
  CTQ26109.1  14 CAFIFAAAWFCLWSISLHLVERADLAVLlFPFGLRLGLMLQCPRGYWPVLLGTEWLLI--------SWLAQEVALAHPIILMTGSLLTLLPVALISRYR 104
                 7899***************************************************999........777777777777777777777788888888777 PP

       MASE1 103 letlkdwllfvvaaaiiaalllaiiglalllllgliplaslssswltwwlgsatGvlvvaplllllrrylrqrhrlsafveqdlaplaakllllfalll 201
                 +++   wl ++ ++++  ++ +a+  ++ +l+ g          +l+ +l  +tG+l++ap++l++ +yl +  ++++ + + ++p+  +  +l+++ll
  CTQ26109.1 105 QQRD--WLTLLRQGGA--LMAAALLQSLPWLAEG--------DEGLNALLLTLTGGLTLAPTCLVFWHYLTSTVWRPLGPALVAQPVNWRGRHLIWYLL 191
                 7765..6666666554..3445555555555566........8899999999*********************************************** PP

       MASE1 202 llllvllllllllpfednsplayLllppvlwaAfrfgvrgaslallllavllilftaqgqgpfvqdsgaessaaillqlflavlalvaLlvsaaise 298
                 l+ ++l l+l  lp e + +  ++l +p++ +A+++g++ga +a+l  a+ li   +      ++   ++    + l l l+ ++l++Ll++a i++
  CTQ26109.1 192 LFTISLWLQL-GLPAELSRFTPFCLALPIIALAWHYGWQGALIATLMNAIALIA-SQ------TW---HDH--PVDLLLSLLAQSLTGLLLGAGIQR 275
                 ****999877.5666****************************66655554443.22......22...111..245677777777777777777776 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.1e-09   1.4e-05       4     111 ..     412     498 ..     409     499 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.1e-09
                 HHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEE CS
   HATPase_c   4 krLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGt 102
                   L +++++ + N vk+ ++a+ ++++  +++++l++  eD+G+G+p+                   +   G+Gl+ +++ v+ +gG+++++ +   Gt
  CTQ26109.1 412 VTLFRVCQEGLNNIVKH-ASASAVTLQGWQQDERLMLVLEDDGCGLPPG------------------SNLQGFGLTGMRERVTALGGTLTISCTH--GT 489
                 57999***********9.777777777665558***************2..................3478*********7777*******8888..** PP

                 EEEEEEESS CS
   HATPase_c 103 tftftlple 111
                 ++ ++lpl+
  CTQ26109.1 490 RVCVNLPLR 498
                 ******985 PP

>> DUF2232  Predicted membrane protein (DUF2232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.4   5.7e-06     0.026       7      87 ..     197     282 ..     191     288 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.7e-06
     DUF2232   7 fllslyiPv.lgiilafllPlPiilltlrhgrkygllallvaavllllfgg...plla.llllilfgllGlvlGyllkkkksaert 87 
                 + l l +P  l+ ++ f l+lPii l   +g++ +l+a+l+ a+ l++ ++    ++  ll+l+  +l+Gl+lG  +++ ++ +++
  CTQ26109.1 197 LWLQLGLPAeLSRFTPFCLALPIIALAWHYGWQGALIATLMNAIALIASQTwhdHPVDlLLSLLAQSLTGLLLGAGIQRLRELNQS 282
                 5555555544778899************************999888776542224444378888999********99998776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 4041.43
//
Query:       CTQ26110.1  [L=197]
Description: DNA-binding response regulator in two-component regulatory system wtih UhpB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-25   87.4   0.0    1.1e-24   86.8   0.0    1.3  1  Response_reg   Response regulator receiver domain
    2.1e-22   78.4   0.1    3.9e-22   77.6   0.1    1.5  1  GerE           Bacterial regulatory proteins, luxR family
    2.8e-05   23.7   0.7    9.3e-05   22.0   0.1    2.1  2  Sigma70_r4_2   Sigma-70, region 4
      4e-05   22.9   0.0    9.7e-05   21.7   0.0    1.7  1  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
    0.00023   20.9   0.0    0.00047   19.9   0.0    1.6  1  HTH_23         Homeodomain-like domain
     0.0003   20.9   0.7    0.00053   20.1   0.0    1.9  1  HTH_28         Helix-turn-helix domain
     0.0011   18.5   0.0     0.0025   17.3   0.0    1.7  1  HTH_24         Winged helix-turn-helix DNA-binding
     0.0014   18.3   0.0     0.0039   16.9   0.0    1.7  1  HTH_38         Helix-turn-helix domain
     0.0015   18.5   0.0     0.0049   16.9   0.0    2.0  2  HTH_29         Winged helix-turn helix
     0.0021   18.4   0.1     0.0043   17.3   0.1    1.5  1  HTH_Tnp_1      Transposase
     0.0026   17.6   0.0      0.005   16.7   0.0    1.5  1  Terminase_5    Putative ATPase subunit of terminase (gpP-like
     0.0033   17.8   0.0     0.0063   16.9   0.0    1.5  1  HTH_40         Helix-turn-helix domain
     0.0049   16.9   0.0       0.01   15.9   0.0    1.5  1  HTH_7          Helix-turn-helix domain of resolvase
     0.0095   15.4   0.2       0.03   13.8   0.2    1.8  1  Sigma70_r4     Sigma-70, region 4
  ------ inclusion threshold ------
      0.011   15.6   1.1       0.02   14.8   0.0    2.0  2  HTH_5          Bacterial regulatory protein, arsR family
       0.02   14.8   0.0      0.029   14.3   0.0    1.2  1  Sigma70_ECF    ECF sigma factor
      0.021   14.8   0.1       0.05   13.7   0.1    1.6  1  HTH_20         Helix-turn-helix domain
      0.029   14.2   0.0      0.072   13.0   0.0    1.7  1  MarR_2         MarR family
      0.032   14.0   0.2      0.082   12.7   0.0    1.8  1  HTH_IclR       IclR helix-turn-helix domain
       0.04   13.8   0.0       0.11   12.3   0.0    1.8  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.091   12.6   0.1       0.37   10.6   0.1    2.1  1  HTH_10         HTH DNA binding domain
       0.14   12.3   0.0       0.25   11.5   0.0    1.4  1  HTH_AraC       Bacterial regulatory helix-turn-helix proteins
       0.15   11.9   0.1       0.26   11.1   0.1    1.4  1  Cadherin_2     Cadherin-like


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   1.4e-27   1.1e-24       1     112 []       4     113 ..       4     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 1.4e-27
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   + ++dD+ +vr++++qll  e+++++vae+ +g+eal  l  + v+++++Di+mp+++Glell+++ +    +  i+l+ h++ + +++al+aga +
    CTQ26110.1   4 IALIDDHLIVRSGFAQLLGlEADFQVVAEFGSGREALTGLPGRGVQVCICDISMPDISGLELLSQLPK---GMATIMLSVHDSPALIEQALNAGARG 97 
                   679****************99*******************************************9977...789*********************** PP

                   EEESSG-HHHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkale 112
                   flsK ++p+eL++a++
    CTQ26110.1  98 FLSKRCSPDELIAAVR 113
                   ************9985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.1     5e-25   3.9e-22       2      55 ..     137     190 ..     136     192 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 5e-25
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvr 55 
                 +L+kREr+v + la+G+ +keIA+el++S+kTV+vh++n+++KL+v ++vel+r
  CTQ26110.1 137 PLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDVELAR 190
                 8***************************************************98 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.8   1.4e+03       6      19 ..      64      77 ..      63      80 .. 0.79
   2 !   22.0   0.1   1.2e-07   9.3e-05      18      54 .]     145     180 ..     138     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.8
                  HHHTTS-HHHHHHH CS
  Sigma70_r4_2  6 ealaeLperqreif 19
                  e+l++Lp+   +i+
    CTQ26110.1 64 ELLSQLPKGMATIM 77
                  89*****9777665 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 1.2e-07
                   HHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  18 ifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   + +    +g+  kEIA++lg+s++tV  + +  ++kL
    CTQ26110.1 145 VAEK-LAQGMAVKEIAAELGLSPKTVHVHRANLLEKL 180
                   5555.469********************988777776 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.2e-07   9.7e-05      16      45 ..     142     170 ..     132     170 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.2e-07
  HTH_Tnp_ISL3  16 leayilelllesrsvkavArqlgvSwtTVw 45 
                     ++++e l ++++vk++A++lg+S++TV+
    CTQ26110.1 142 E-RQVAEKLAQGMAVKEIAAELGLSPKTVH 170
                   4.55555555555***************96 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     6e-07   0.00047       7      35 ..     143     170 ..     137     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 6e-07
      HTH_23   7 RlrillllaeGlsvreIAreLgvsrrTvy 35 
                 R +++  la+G+ v+eIA+eLg s+ Tv 
  CTQ26110.1 143 R-QVAEKLAQGMAVKEIAAELGLSPKTVH 170
                 3.47888889******************6 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   6.8e-07   0.00053       4      29 ..     144     169 ..     141     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 6.8e-07
      HTH_28   4 eiikllaaGhsvreaArelgisrrtv 29 
                 ++ + la+G++v+e+A+elg+s+ tv
  CTQ26110.1 144 QVAEKLAQGMAVKEIAAELGLSPKTV 169
                 6778899******************9 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.2e-06    0.0025      17      43 ..     152     178 ..     146     179 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.2e-06
      HTH_24  17 risqreLAerlglSpstvnrrlkrLee 43 
                 ++  +e+A +lglSp tv+ +  +L e
  CTQ26110.1 152 GMAVKEIAAELGLSPKTVHVHRANLLE 178
                 67789***************9888877 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     5e-06    0.0039       5      37 ..     138     169 ..     135     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5e-06
      HTH_38   5 LsleeReeIerllaeGlslreIArrLgrspsTI 37 
                 L+  eR++ e+ la+G+ ++eIA +Lg sp T+
  CTQ26110.1 138 LTKRERQVAEK-LAQGMAVKEIAAELGLSPKTV 169
                 66678866666.599*****************8 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.3e-06    0.0049       3      30 ..     144     170 ..     143     181 .. 0.89
   2 ?   -2.6   0.0       7.3   5.7e+03       6      22 ..     176     192 ..     172     192 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.3e-06
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvy 30 
                 q+  +la+G+  v++iA+ lgls++tv 
  CTQ26110.1 144 QVAEKLAQGMA-VKEIAAELGLSPKTVH 170
                 566789****8.**************96 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.3
      HTH_29   6 lllaeGvstvsqiAkll 22 
                 ll + Gvs+  ++A+++
  CTQ26110.1 176 LLEKLGVSNDVELARRM 192
                 56677888888888876 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   5.5e-06    0.0043      12      57 ..     141     186 ..     137     192 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.5e-06
   HTH_Tnp_1  12 KariVreslepgksvsevArrhgvspnqLykWrrqyregeeaspae 57 
                 ++r V+e l +g  v+e+A ++g+sp++    r+   e++++s + 
  CTQ26110.1 141 RERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKLGVSNDV 186
                 7899***********************9999888888888887765 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.4e-06     0.005       3      31 ..     143     170 ..     141     175 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.4e-06
  Terminase_5   3 RrqArlLYwqGyrvaeIAeelglkeatVy 31 
                  R++A  L  qG  v+eIA+elgl+++tV+
   CTQ26110.1 143 RQVAEKL-AQGMAVKEIAAELGLSPKTVH 170
                  5556655.5999****************9 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   8.1e-06    0.0063       8      39 ..     148     179 ..     142     194 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8.1e-06
      HTH_40   8 lleeglsieeIAkerglkesTIegHLaeliee 39 
                  l +g+ ++eIA+e gl+++T+  H a+l+e+
  CTQ26110.1 148 KLAQGMAVKEIAAELGLSPKTVHVHRANLLEK 179
                 5789*********************8888876 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-05      0.01      12      38 ..     143     169 ..     133     170 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-05
                 GGGGSSTTTT--STTTSSSS---SSSS CS
       HTH_7  12 nrvvkLleeGisiskIAkevnisRsTv 38 
                  +v + l++G+++++IA e+++s+ Tv
  CTQ26110.1 143 RQVAEKLAQGMAVKEIAAELGLSPKTV 169
                 5777889*******************9 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   3.9e-05      0.03       5      48 ..     138     180 ..     136     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.9e-05
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 L+ rer+v e    +g+  +EI+++lg+S  +V+ + ++ l+kL
  CTQ26110.1 138 LTKRERQVAEK-LAQGMAVKEIAAELGLSPKTVHVHRANLLEKL 180
                 56666666443.3578889***************9999999998 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.4       6.2   4.8e+03      17      22 ..      51      56 ..      49      56 .. 0.88
   2 ?   14.8   0.0   2.6e-05      0.02      16      35 ..     153     172 ..     143     181 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.2
                EHHHHH CS
       HTH_5 17 cvcela 22
                c+c+++
  CTQ26110.1 51 CICDIS 56
                9***97 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.6e-05
                 EEHHHHHHHHTS-HHHHHHH CS
       HTH_5  16 lcvcelaeelglsqstvShH 35 
                 + v e+a+elgls+ tv  H
  CTQ26110.1 153 MAVKEIAAELGLSPKTVHVH 172
                 89***************999 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.7e-05     0.029     140     169 ..     141     170 ..     127     182 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.7e-05
  Sigma70_ECF 140 qarlvelrkleGlsveEiAeklgvskrtve 169
                    r+v+ +  +G+ v+EiA++lg+s +tv+
   CTQ26110.1 141 RERQVAEKLAQGMAVKEIAAELGLSPKTVH 170
                  56899999********************96 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   6.4e-05      0.05      19      50 ..     149     178 ..     142     182 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.4e-05
                 HSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHH CS
      HTH_20  19 LaraegltaselaerldlskntlsyHLrvLee 50 
                 L  a+g+ ++e+a++l+ls++t++ H + L e
  CTQ26110.1 149 L--AQGMAVKEIAAELGLSPKTVHVHRANLLE 178
                 5..89*******************99766655 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.2e-05     0.072      19      40 ..     152     171 ..     133     181 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.2e-05
                 TSEEEHHHHHHHHTSSHHHHHH CS
      MarR_2  19 grdltvgelarrlglsksavsr 40 
                 g  ++v+e+a++lgls+ +v+ 
  CTQ26110.1 152 G--MAVKEIAAELGLSPKTVHV 171
                 3..89************99985 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0    0.0001     0.082      16      36 ..     150     170 ..     143     179 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0001
                 BSS-BHHHHHHHHTS-HHHHH CS
    HTH_IclR  16 pqeltlselArrtglpkStvh 36 
                 +q++ ++e+A+++gl++ tvh
  CTQ26110.1 150 AQGMAVKEIAAELGLSPKTVH 170
                 799**************9999 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00014      0.11      19      35 ..     154     170 ..     152     176 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
  HTH_AsnC-type  19 syaeLAervGlSestvl 35 
                     ++e+A+++GlS+ tv+
     CTQ26110.1 154 AVKEIAAELGLSPKTVH 170
                    579*************8 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00047      0.37      25      43 ..     154     172 ..     138     181 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00047
      HTH_10  25 tlkeLAkelGIskstlseh 43 
                  +ke+A elG+s+ t++ h
  CTQ26110.1 154 AVKEIAAELGLSPKTVHVH 172
                 579*************988 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00033      0.25       3      24 ..     147     168 ..     145     171 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00033
                 CCCSCT--HHHHHHHTTSSHHH CS
    HTH_AraC   3 enlstnltiediAdelgfSrsy 24 
                 e+l++++ +++iA+elg+S+ +
  CTQ26110.1 147 EKLAQGMAVKEIAAELGLSPKT 168
                 7899***************976 PP

>> Cadherin_2  Cadherin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00034      0.26       5      38 ..     144     177 ..     140     188 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
                 EEESS--TT-EEEEHHHHTTS-HHHHHHTTBEEE CS
  Cadherin_2   5 svlEEtekgsfvgnlakdLgLeveeLaargarvv 38 
                 +v+E   +g++v ++a +LgL+++ ++ ++a ++
  CTQ26110.1 144 QVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLL 177
                 799*********************9998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1691.20
//
Query:       CTQ26111.1  [L=95]
Description: acetolactate synthase I, small subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-09   35.7   0.0    7.1e-09   35.3   0.0    1.2  1  ACT       ACT domain
    8.4e-09   35.2   0.0    1.5e-08   34.3   0.0    1.4  1  ACT_5     ACT domain
    0.00014   22.3   0.0     0.0002   21.9   0.0    1.2  1  ACT_4     ACT domain


Domain annotation for each model (and alignments):
>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.2e-12   7.1e-09       2      66 ..       9      72 ..       8      73 .. 0.97

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.2e-12
                EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT  2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkle 66
                +l++ v+++PG++  v+g++a+r +N++ i   +   +  +  ++ +v d+++l +++ +++kle
  CTQ26111.1  9 ILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQGS-EHSRIWLLVNDDQRLGQMISQIEKLE 72
                7999*******************************998.************************98 PP

>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   2.5e-12   1.5e-08       2      62 .]      17      77 ..      16      77 .. 0.97

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 2.5e-12
       ACT_5  2 apgvLeRvlrvvrrrgFevkslnmsttedggtvrieltVesersvelLsnQleKLidVlkV 62
                 pgv  +v++++ rr F+v+ +   + + ++++ri l V+++  + + ++Q+eKL dV+kV
  CTQ26111.1 17 HPGVMTHVCGLFARRAFNVEGILCLPIQGSEHSRIWLLVNDDQRLGQMISQIEKLEDVTKV 77
                69***************************************9999999***********98 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.4e-08    0.0002       7      80 .]       8      79 ..       7      79 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.4e-08
       ACT_4  7 vrleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLsrviakLraipgVisVeR 80
                v le+++++ +g+++ ++ +++    n++ +     +  g  + +i + V+d + L ++i +++++++V++V R
  CTQ26111.1  8 VILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQ--GSEHSRIWLLVNDDQRLGQMISQIEKLEDVTKVAR 79
                56899******************************75..78999****************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 830.60
//
Query:       CTQ26112.1  [L=562]
Description: acetolactate synthase I, large subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-58  197.5   2.3    2.9e-57  193.0   0.1    2.6  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    2.9e-48  163.1   0.3    1.1e-47  161.2   0.3    2.0  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
    2.1e-47  160.7   1.7    2.5e-47  160.5   0.3    1.9  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.026   14.3   0.0    1.4  1  CO_dh         CO dehydrogenase beta subunit/acetyl-CoA syntha


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.0   0.1   6.5e-61   2.9e-57       2     169 ..      14     180 ..      13     183 .. 0.99
   2 !    3.6   0.4      0.01        45     141     165 ..     520     544 ..     424     548 .. 0.67

  Alignments for each domain:
  == domain 1  score: 193.0 bits;  conditional E-value: 6.5e-61
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   t+a+++v++L+++g++ v g+pG++ilp++dals++ +ir++larhEqga+f+A+g+ar  gkp+v++++sgpGatn++ta+a+A++d+iPl++++g
    CTQ26112.1  14 TGAQLVVHLLERQGITMVSGIPGGSILPIYDALSQSTQIRHILARHEQGAGFIAQGMARTEGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITG 110
                   89*********************************************************************************************** PP

                   E--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N  99 drptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevd 169
                   ++p+s++g++++q e+d  ++  p+tk+++ v++ +elp+++ +A+r+a+sgrpgPv++++pkdv++++++
    CTQ26112.1 111 QVPASMIGTDAFQ-EVDTYGISIPITKHNYLVRDIAELPQVISDAFRIAQSGRPGPVWIDIPKDVQSATIE 180
                   *************.*****************************************************9987 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.01
                   HHHHHHHHSSS--EEEEEEEHHHCC CS
  TPP_enzyme_N 141 rrAirtalsgrpgPvylelpkdvll 165
                   ++A  +a  +rpgP+++ +  d ++
    CTQ26112.1 520 PQAALQAIIDRPGPALIHVRIDAQQ 544
                   46666667************99987 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.81   3.6e+03      26      54 ..      14      42 ..       9      50 .. 0.81
   2 !  161.2   0.3   2.4e-51   1.1e-47       1     137 []     201     334 ..     201     334 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.81
                  TGHHHHHHHHHHHT-EEEEEGGGTTSS-T CS
  TPP_enzyme_M 26 gaseelrelaeklgiPvvttlmgkgvipe 54
                    ++ +++l+e+ gi +v+   g +++p 
    CTQ26112.1 14 TGAQLVVHLLERQGITMVSGIPGGSILPI 42
                  56788999*********999999988885 PP

  == domain 2  score: 161.2 bits;  conditional E-value: 2.4e-51
                   HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   +++aa++++aakrpv+++Gggv+  +a +++relaek ++P + tlm+ g++p+ hpl+lgmlg+hg++++n +l+eaDl+++lGarfdd r  g+ 
    CTQ26112.1 201 VREAAAMINAAKRPVLYLGGGVI--NAPQAIRELAEKANLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNFILQEADLLIVLGARFDD-RAIGKT 294
                   679********************..*****************************************************************.999*99 PP

                   TTTTTT-EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  98 pefapeakiihididpaeigknyqvdlaivgdvketleaL 137
                   ++f+p+akiih+did+ae+gk +q+++ai+gdv+e+l +L
    CTQ26112.1 295 EQFCPNAKIIHVDIDRAELGKIKQPHVAIQGDVAEVLAQL 334
                   9************************************997 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.4   6.4e+03      28      61 ..      79     117 ..      71     135 .. 0.64
   2 !  160.5   0.3   5.5e-51   2.5e-47       1     153 []     390     538 ..     390     538 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
                   S-TTTHHHHHHHHHH....HST.TSEEEEEEEHHHHHHT CS
  TPP_enzyme_C  28 gtmGyglpaAiGakl....akp.drevvaivGDGgflmi 61 
                   ++m  + p+A+ +      a+  + + v+i+G     mi
    CTQ26112.1  79 VCMACSGPGATNLVTaiadARLdSIPLVCITGQVPASMI 117
                   577777777776666332222213578888886666665 PP

  == domain 2  score: 160.5 bits;  conditional E-value: 5.5e-51
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   d+G++++w+a+ ++++rpr++ltsgglgtmG+glpaAiGa+la+p+r+v++++GDG+++m++qe+ata++++l++++++lnNe++g++ +qq+ f++
    CTQ26112.1 390 DVGQHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPQRKVICFSGDGSLMMNIQEMATAAENQLDVKIILLNNEALGLVHQQQSLFYQ 486
                   89*********************************************************************************************** PP

                   CTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  98 krksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                   +  ++ ++     ++f ++a+++G + + ++++   + ++al++ +++ gpali+v
    CTQ26112.1 487 QGVFAATY--PGMINFMQIAAGFGLQTCDLNNE--VDPQAALQAIIDRPGPALIHV 538
                   99998885..8899************7776666..99*****************98 PP

>> CO_dh  CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.9e-06     0.026      21      70 ..     197     244 ..     182     306 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.9e-06
                 EE--SHHHHHHHHHSSSEEEEE-S--.-HH.HHHHHHHHHTSSSEEEEET CS
       CO_dh  21 leealkvvakmikkakrPllivGpqvlkaeneeakekkilekklkvvata 70 
                 + e ++++a mi  akrP+l +G+ v +a    a+    ++ +l++ +t 
  CTQ26112.1 197 APESVREAAAMINAAKRPVLYLGGGVINAP--QAIRELAEKANLPTTMTL 244
                 557789********************8776..677777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4320.39
//
Query:       CTQ26113.1  [L=29]
Description: Small toxic protein TisB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-19   67.8  11.1      5e-19   67.8  11.1    1.0  1  TisB_toxin  Toxin TisB, type I toxin-antitoxin system


Domain annotation for each model (and alignments):
>> TisB_toxin  Toxin TisB, type I toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8  11.1   2.8e-23     5e-19       1      28 []       1      28 [.       1      28 [. 0.99

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 2.8e-23
  TisB_toxin  1 MggmdiiILILKLiVAvLQLLdAVLKff 28
                MggmdiiILILKL+VAvLQLLdAVLK+f
  CTQ26113.1  1 MGGMDIIILILKLMVAVLQLLDAVLKQF 28
                ***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (29 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 217.19
//
Query:       CTQ26114.1  [L=148]
Description: putative acyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-16   60.5   0.0    1.9e-16   60.2   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    3.4e-11   43.4   0.0      4e-11   43.2   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.7e-10   41.2   0.0    2.5e-10   40.6   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00044   20.3   0.0     0.0025   17.9   0.0    1.9  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
     0.0032   17.4   0.1      0.016   15.2   0.1    1.9  1  FR47             FR47-like protein
     0.0055   16.4   0.0     0.0065   16.2   0.0    1.3  1  PanZ             Acetyltransferase (GNAT) domain, PanZ
  ------ inclusion threshold ------
      0.014   15.4   0.1      0.047   13.7   0.1    1.8  2  Acetyltransf_13  ESCO1/2 acetyl-transferase
       0.02   15.0   0.0      0.031   14.4   0.0    1.2  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
      0.097   12.1   0.0       0.21   11.0   0.0    1.5  2  Acetyltransf_15  Putative acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   9.5e-20   1.9e-16      20     113 ..      39     139 ..      18     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 9.5e-20
  Acetyltransf_10  20 ealrerieegealllvaeeggkivGviel.rdgs.......hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklG 105
                      ++ ++r++++  +ll+a+++ ++vGv+++ +d         +i +l++++ yr++Gig++Ll  v+++ + +     l+ +a  +a pfYe+lG
       CTQ26114.1  39 QSGKNRFNAPGETLLGAFVNHQLVGVCGInSDPFspqpragRIRHLYISERYRRRGIGQQLLVSVITHSSAWFD--FLNTHAPAQAWPFYERLG 130
                      667889999********************666669*********************************988854..7***************** PP

  Acetyltransf_10 106 Fkav.geeq 113
                      F++v +e++
       CTQ26114.1 131 FRPVyDEPR 139
                      ***976665 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0     2e-14     4e-11      27     117 .]      41     131 ..      16     131 .. 0.81

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 2e-14
                     H...HHSTTCEEEEEEETTEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EEEEETTEHHHHHHHHHTT CS
  Acetyltransf_1  27 s...fsleaegllvaeedgeliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vlaveedndaairlYeklG 116
                         f  + e+ll a  + +l+G ++++ +p+ + ++ + i+ l++s+ yr++G+G++Ll  ++ +   +      +l ++++  +a ++Ye+lG
      CTQ26114.1  41 GknrFNAPGETLLGAFVNHQLVGVCGINSDPFsPQPRAGRIRHLYISERYRRRGIGQQLLVSVITHSSAW----FdFLNTHAP-AQAWPFYERLG 130
                     13335556668888*******************99***********************************....778877777.58********* PP

                     E CS
  Acetyltransf_1 117 F 117
                     F
      CTQ26114.1 131 F 131
                     9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   1.2e-13   2.5e-10       8      76 .]      55     133 ..      48     133 .. 0.69

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 1.2e-13
                     EEETTEEEEEEEEEEES.......TCTEEEEE-GGGTTSSHHHHHHHHTT..SEEEEEEEEETHH...HHHHHHHHTTEEE CS
  Acetyltransf_7   8 aeddgkivGfialslld.......aeitrlaVdpeyrgkGiGraLleaae..kgiileqlelnae...kaikfYeklGFee 76 
                     a  + + vG +++  +        + i +l++++ yr++GiG++Ll  ++  +    +   ln++   +a +fYe+lGF++
      CTQ26114.1  55 AFVNHQLVGVCGINSDPfspqpraGRIRHLYISERYRRRGIGQQLLVSVIthSSA--WFDFLNTHapaQAWPFYERLGFRP 133
                     55567888988888877999988777777*****************842222111..122333323245666*******85 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.2e-06    0.0025       9     127 ..      12     133 ..       5     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.2e-06
                     GHHHHHHHHHHHTT----H.....HHHHHHHHHHTT..SEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHH CS
  Acetyltransf_9   9 dldevlellkyaFqdeespl...eeireyfrkllee..srvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlara 98 
                     d +++++l  ++ +++ + l    e +++ +++++   +  lga+ n +lvg++++++  ++ +    +a+ +        +r+rg+ ++Ll  +
      CTQ26114.1  12 DAPGFAALRIESLEQHFNMLrrlAENWQSGKNRFNApgETLLGAFVNHQLVGVCGINSDPFSPQ---PRAGRIRHLYISERYRRRGIGQQLLVSV 103
                     5666666666666555555554337899999999965579999************999888764...5678888888899*************** PP

                     HHHHHHTT--EEEE--SS.HHHHHTTT-EE CS
  Acetyltransf_9  99 leemreegqplsllfPss.ipiYrrfGyei 127
                     +++  ++ + l +  P++  p+Y+r+G+++
      CTQ26114.1 104 ITHSSAWFDFLNTHAPAQaWPFYERLGFRP 133
                     ****************6626********87 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   7.9e-06     0.016      19      80 ..      76     134 ..      73     140 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.9e-06
                 -TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  19 kdggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfeki 80 
                 +  g +  l++ +  rrrG g++l  +++ + ++  + +  ++ a   ++  +ye+lGf+  
  CTQ26114.1  76 PRAGRIRHLYISERYRRRGIGQQLLVSVITHSSAWFDFLNTHAPA---QAWPFYERLGFRPV 134
                 5569999****************9998887755555444444444...45669999999965 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.3e-06    0.0065      37      88 ..      49     105 ..      20     135 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.3e-06
        PanZ  37 egalfaarFNdRlLgAvkveledk.....eaelsdlcVRevTRrRGVgsyLleearr 88 
                 +++l+ a  N  l g + ++ +       ++++++l + e  RrRG+g+ Ll  +  
  CTQ26114.1  49 GETLLGAFVNHQLVGVCGINSDPFspqprAGRIRHLYISERYRRRGIGQQLLVSVIT 105
                 6778888889999999988875322223399********************976655 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.2   2.4e+03      11      31 ..      38      58 ..      32      68 .. 0.51
   2 ?   13.7   0.1   2.4e-05     0.047       7      33 ..      81     107 ..      78     117 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.2
  Acetyltransf_13 11 WvssshRrkgiAtkLldaare 31
                     W s ++R +    +Ll a+++
       CTQ26114.1 38 WQSGKNRFNAPGETLLGAFVN 58
                     333344444444444544444 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.4e-05
  Acetyltransf_13   7 isriWvssshRrkgiAtkLldaarenf 33 
                      i+ +++s+ +Rr+gi ++Ll +++ + 
       CTQ26114.1  81 IRHLYISERYRRRGIGQQLLVSVITHS 107
                      8899****************9998875 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.6e-05     0.031      26      52 ..      80     106 ..      70     109 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
  Acetyltransf_CG  26 dfthTeVpeelrGkGiAkkLvkaaldd 52 
                       + h +++e++r++Gi+++L  +++ +
       CTQ26114.1  80 RIRHLYISERYRRRGIGQQLLVSVITH 106
                      589*****************9998876 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.21      75      99 ..      81     105 ..      72     117 .. 0.88
   2 ?   -2.4   0.0       1.3   2.6e+03     127     138 ..     122     133 ..     120     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
  Acetyltransf_15  75 iYtlyvsekyrgkGlakklLeeslk 99 
                      i +ly+se+yr++G+ ++lL   ++
       CTQ26114.1  81 IRHLYISERYRRRGIGQQLLVSVIT 105
                      5579****************98775 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
  Acetyltransf_15 127 sfalYyslgFrk 138
                      ++ +Y  lgFr 
       CTQ26114.1 122 AWPFYERLGFRP 133
                      5679******85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1108.11
//
Query:       CTQ26115.1  [L=277]
Description: Integral membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-16   61.2  31.7    1.1e-12   48.3   9.3    2.2  2  EamA            EamA-like transporter family
  ------ inclusion threshold ------
      0.095   13.4  17.7       0.13   12.9   6.7    4.2  3  Multi_Drug_Res  Small Multidrug Resistance protein
        7.1    5.6  13.2       0.19   10.8   4.3    2.5  3  Mg_trans_NIPA   Magnesium transporter NIPA


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9  14.4   2.1e-07    0.0013       5     135 ..       7     130 ..       3     132 .. 0.77
   2 !   48.3   9.3   1.8e-16   1.1e-12       2     135 ..     140     274 ..     139     276 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.1e-07
        EamA   5 llallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnasli.tsleP 102
                 +++l aal++a++  + k+   k+     +  +    +++ l+++++  ++     l +  +ll  ++l +v + +l  +  + ++ s+  ++   ++P
  CTQ26115.1   7 CILLFAALLHASWNAIVKASGDKMYAAIGVSGSA---ALIALVMLPFAPQPA----LVSAPYLLASCALQVVYT-VLVAKTYQVSDMSQTYPLmRGTAP 97 
                 5678899999999999999877775544443333...333333333333333....677899999998887666.999**********99998578*** PP

        EamA 103 vftlilsvlllgekltlkqllgivlillGvlli 135
                 ++++ +svl+lg +l+ + +lgi++i l++l +
  CTQ26115.1  98 LLVAAISVLFLGDRLSPLAWLGIGVICLAILAM 130
                 *****************************9976 PP

  == domain 2  score: 48.3 bits;  conditional E-value: 1.8e-16
        EamA   2 lgillallaalfwaiyfvlskillrkv.spltltfvrfliagillliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnaslit 98 
                 +gi+lal+ a+f a y+++   ++r   s l +t ++f++ g+ ll +a++ +++  +++ +++w+   +lg +gt+  ++l ++a++  + ++++ + 
  CTQ26115.1 140 KGIVLALINACFIAGYTLVDGTGVRLAgSALGYTLWTFFMNGFCLLCWAMVARRREaSRYLRQHWKK-GILGGIGTMGSYGLALWAMTQAPLAVVAALR 237
                 79******************99999885777*************************99999999999.777779************************* PP

        EamA  99 slePvftlilsvlllgekltlkqllgivlillGvlli 135
                  ++ +f +++++++l+e+l  + +++++ i +G++l+
  CTQ26115.1 238 ETSILFGALIAFIVLKEQLMPLRIVAACGIAAGAILL 274
                 ***********************************98 PP

>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   6.7   2.2e-05      0.13      41      93 .]      71     123 ..       4     123 .. 0.86
   2 ?    6.7   0.2    0.0019        11      62      93 .]     117     147 ..     115     147 .. 0.76
   3 ?    1.0   1.5      0.12   7.1e+02      38      88 ..     213     262 ..     174     267 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.2e-05
                     HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH CS
  Multi_Drug_Res  41 isfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslkkliglali 93 
                     +  +l +k+++  ++s  Y++  G   +l++++++l++g++ls   ++g+++i
      CTQ26115.1  71 VYTVLVAKTYQVSDMSQTYPLMRGTAPLLVAAISVLFLGDRLSPLAWLGIGVI 123
                     34567899******************************************987 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0019
                     HHHHHHHHHHHHHHHHH--------HHHHHHH CS
  Multi_Drug_Res  62 wsGiGtvlivlvgillfgeslslkkliglali 93 
                     w GiG++ ++++++ + g   s  k i lali
      CTQ26115.1 117 WLGIGVICLAILAMAFNGRASSR-KGIVLALI 147
                     99***********9996655555.55556665 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.12
                     HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HH CS
  Multi_Drug_Res  38 gygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslkkli 88 
                     g + s+ l  +a+ + p++v+ a+ +   +++ +l+++++++e+l   +++
      CTQ26115.1 213 GTMGSYGLALWAMTQAPLAVVAALRE-TSILFGALIAFIVLKEQLMPLRIV 262
                     44557777778888888888866544.557888888888888888766665 PP

>> Mg_trans_NIPA  Magnesium transporter NIPA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.8     0.064   3.8e+02     218     259 ..      62     103 ..       2     113 .. 0.68
   2 ?   -0.6   0.2     0.092   5.5e+02      90     111 ..     101     122 ..      79     158 .. 0.68
   3 ?   10.8   4.3   3.3e-05      0.19      46     117 ..     199     272 ..     140     276 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.064
  Mg_trans_NIPA 218 lvicvvlqinyLnkaldifntsivtPvyyvlfttlvivasai 259
                    l+++++lq+ y      ++++s ++  y ++  t  ++ +ai
     CTQ26115.1  62 LLASCALQVVYTVLVAKTYQVSDMSQTYPLMRGTAPLLVAAI 103
                    457888888888888888888888888888887776655554 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.092
  Mg_trans_NIPA  90 avlasllLkekLkllgllGcll 111
                    a +++l+L ++L  l  lG+ +
     CTQ26115.1 101 AAISVLFLGDRLSPLAWLGIGV 122
                    5567777777777777666532 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 3.3e-05
  Mg_trans_NIPA  46 ylkevlWwaGlltmavGeaanf....aayafaPatLvtPLGalsvivsavlasllLkekLkllgllGcllailGst 117
                    yl++  W  G+l  ++G ++ +     a + aP ++v+ L   s+++ a++a ++Lke+L  l ++      +G++
     CTQ26115.1 199 YLRQ-HWKKGILG-GIGTMGSYglalWAMTQAPLAVVAALRETSILFGALIAFIVLKEQLMPLRIVAACGIAAGAI 272
                    5554.46666653.45555544221147788*****************************9888887666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2101.92
//
Query:       CTQ26116.1  [L=394]
Description: multidrug efflux system protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-38  131.1  51.1    4.4e-38  131.1  51.1    1.7  1  MFS_1     Major Facilitator Superfamily
    1.6e-05   23.5   9.8    1.6e-05   23.5   9.8    2.1  2  MFS_3     Transmembrane secretion effector
    4.3e-05   22.1   3.9    6.9e-05   21.5   3.9    1.3  1  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
      0.013   15.7   0.8      0.013   15.7   0.8    3.9  4  DUF2530   Protein of unknown function (DUF2530)
        1.6    9.3   0.0        1.6    9.3   0.0    4.3  5  TcpE      TcpE family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.1  51.1   1.2e-41   4.4e-38       2     351 ..      14     349 ..      13     351 .. 0.85

  Alignments for each domain:
  == domain 1  score: 131.1 bits;  conditional E-value: 1.2e-41
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlga 99 
                 +l++++  +a +i++pa+   +a +l++ + +++ ++++y l++++++l++G+lsdr+Grr+v+l+g+ +f l+ +l +++ +sl++l+++ ++qG+g+
  CTQ26116.1  14 VLLVAVGQMAQTIYIPAIA-DMAVALNVREGAVQSVMAAYLLTYGISQLFYGPLSDRVGRRPVILVGMSIFMLA-TLVAITtHSLPVLIAASAMQGMGT 110
                 577888899**********.9*****************************************************.55553448888************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 g++  ++ +l +d++ + +   a++ll++g+ ++++++pllgg+l ++++Wra++ +l ++++ +   ++ ++pe++pe ++ ++            ++
  CTQ26116.1 111 GVGGVMARTLPRDLYEGAQLRHANSLLNMGILVSPLIAPLLGGILDTLWSWRACYAFLLVLCAGVTFSMAKWMPETRPEGAPRTKLL----------AS 199
                 *****************************************************************8877788888888877775544..........47 PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                  +k l+    + ++l++l+++ +g++ + + + +++  vlgls   +a+   ++l+++ +++a+++++++ r ++r+++l+  +++ ++++gl+++ + 
  CTQ26116.1 200 -YKTLFGTGAFNCYLLMLIGGLAGIAVFEACSGVLMGAVLGLS--SMAV---SILFILPIPAAFFGAWFAGRPNKRFPTLMWQSVICCLLAGLMMWIPG 292
                 .********99899*******99********************..4444...55555555557778888888777666666555555555555555555 PP

       MFS_1 298 ...ssavllll.vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggal 351
                      +v++ll + +l+ fg+g+ fp++++ a++ +p   agta +l++ ++++g+ +
  CTQ26116.1 293 llgIMTVWTLLvPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGV 349
                 3554444444435555777*****************8.****************9876 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   9.8   4.5e-09   1.6e-05       8     206 ..       3     199 ..       2     253 .. 0.91
   2 ?   -1.0   2.5      0.12   4.4e+02      77     121 ..     273     317 ..     242     322 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 4.5e-09
       MFS_3   8 rqkvFrviWiaslvsnlGtliqev...aasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllsp 103
                 r+k F  + +  l+  +G+++q++   a++ +   ++  + +v  v aa  L   +  ++ G l+D + rR v+l+++++ +l+     +l+a+   s 
  CTQ26116.1   3 RHKNFNLLLMLVLLVAVGQMAQTIyipAIADMAVALNVREGAVQSVMAAYLLTYGISQLFYGPLSDRVGRRPVILVGMSIFMLA-----TLVAITTHSL 96 
                 577888888888999999999998556778888888999999999999999999999********************9987654.....4555566677 PP

       MFS_3 104 wlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylalivallrwkrevrksslprEk 202
                  +l+a + + g+G+ +     +    +l +  +++ A  L  +gi ++  + P lgG+l ++    + +a+  +    + + +++w +e r++  pr k
  CTQ26116.1  97 PVLIAASAMQGMGTGVGGVMARTLPRDLYEGAQLRHANSLLNMGILVSPLIAPLLGGILDTLWSWRACYAFLLVLCAGVTFSMAKWMPETRPEGAPRTK 195
                 88999**************99999****************************************99****9999999********************99 PP

       MFS_3 203 llea 206
                 ll++
  CTQ26116.1 196 LLAS 199
                 9876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.12
       MFS_3  77 vllavqlllalvsvlltvlaalgllspwlllaltlligiGaalnd 121
                 ++    +  +l+ +++ +  +lg++++w+ll+ + l   Ga +  
  CTQ26116.1 273 LMWQSVICCLLAGLMMWIPGLLGIMTVWTLLVPAALFFFGAGMLF 317
                 344444456778888889999**********98888887777655 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   3.9   1.9e-08   6.9e-05      88     208 ..      53     173 ..      19     187 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.9e-08
       TRI12  88 ttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagasplfvgelmsnktkfl.gllivsipvvvtsglspyl 185
                  +   +s l  g l+dr+grrp++++   + ++ ++v  t+  +  l+aa ++ g+ +g  g     +   + + +++     ++ + ++v   ++p l
  CTQ26116.1  53 LLTYGISQLFYGPLSDRVGRRPVILVGMSIFMLATLVAITTHSLPVLIAASAMQGMGTGVGGVMARTLPRDLYEGAQLRhANSLLNMGILVSPLIAPLL 151
                 34456899**************************************************99998765555444443333213334455556666678999 PP

       TRI12 186 gqrlaiqgswrwifyiyiitsai 208
                 g  l    swr  +   +++   
  CTQ26116.1 152 GGILDTLWSWRACYAFLLVLC-A 173
                 999999999997765444443.3 PP

>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.8   3.6e-06     0.013      14      56 ..      73     115 ..      66     122 .. 0.87
   2 ?   -1.1   1.4      0.65   2.3e+03      44      58 ..     231     245 ..     204     249 .. 0.71
   3 ?   -5.7   6.3         5   1.8e+04      24      52 ..     289     314 ..     274     353 .. 0.54
   4 ?   -1.8   0.3         1   3.7e+03      17      27 ..     345     355 ..     330     376 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.6e-06
     DUF2530  14 rpvivvgtllWlvalvvllvvgdaleswlpvclaGlvvGllGl 56 
                 rpvi+vg+ ++++a++v++++++    +   ++ G+++G+ G+
  CTQ26116.1  73 RPVILVGMSIFMLATLVAITTHSLPVLIAASAMQGMGTGVGGV 115
                 8******************997777778888999***999876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.65
     DUF2530  44 vclaGlvvGllGlai 58 
                   l+G+v+Gl  +a+
  CTQ26116.1 231 GVLMGAVLGLSSMAV 245
                 457888888888776 PP

  == domain 3  score: -5.7 bits;  conditional E-value: 5
     DUF2530  24 WlvalvvllvvgdaleswlpvclaGlvvG 52 
                 W+ +l+ +++v   ++ ++p +l  ++ G
  CTQ26116.1 289 WIPGLLGIMTV---WTLLVPAALFFFGAG 314
                 55444444433...333333333333333 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1
     DUF2530  17 ivvgtllWlva 27 
                 i  g+l+Wl a
  CTQ26116.1 345 IGSGVLAWLSA 355
                 33455555544 PP

>> TcpE  TcpE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   3.2       4.6   1.6e+04      20      20 ..      66      66 ..       7     100 .. 0.54
   2 ?   -1.0   0.7       0.7   2.5e+03      33      54 ..      76      97 ..      56     117 .. 0.65
   3 ?    9.3   0.0   0.00044       1.6      32      87 ..     142     200 ..     122     205 .. 0.66
   4 ?   -7.2   9.5         5   1.8e+04      36      49 ..     277     290 ..     202     322 .. 0.66
   5 ?   -3.0   0.2       2.9   1.1e+04      29      40 ..     370     381 ..     362     389 .. 0.47

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.6
        TcpE 20 L 20
                L
  CTQ26116.1 66 L 66
                0 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.7
        TcpE 33 vlvlvlllllaslipvikgvlp 54
                +lv + +++la+l+++ +++lp
  CTQ26116.1 76 ILVGMSIFMLATLVAITTHSLP 97
                3444444455444444333332 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00044
        TcpE  32 fvlvlvlllllaslipv.ikgvl.pfl......llyivipvvltwllselepdgKklleflkdv 87 
                 +v       l+a l++  ++ ++ + +      +l++++ + +++++ e+ p+g + ++ l ++
  CTQ26116.1 142 LVSP-----LIAPLLGGiLDTLWsWRAcyafllVLCAGVTFSMAKWMPETRPEGAPRTKLLASY 200
                 3322.....2222222334444453223444569********************9999998876 PP

  == domain 4  score: -7.2 bits;  conditional E-value: 5
        TcpE  36 lvlllllaslipvi 49 
                  v+++lla+l++ i
  CTQ26116.1 277 SVICCLLAGLMMWI 290
                 23344444444443 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 2.9
        TcpE  29 iivfvlvlvlll 40 
                 +++  l+l+ +l
  CTQ26116.1 370 MLMGLLILLCWL 381
                 233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 2762.85
//
Query:       CTQ26117.1  [L=307]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-29  100.6   0.0    1.1e-28  100.1   0.0    1.2  1  LysR_substrate  LysR substrate binding domain
    1.1e-19   70.1   1.2    2.3e-19   69.1   1.2    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.034   13.7   0.0    1.7  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.038   13.8   0.1      0.092   12.6   0.0    1.7  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.0   2.4e-32   1.1e-28       2     205 ..      99     304 ..      98     307 .] 0.92

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 2.4e-32
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                     ++l+g+L++   p++a+ +l+p+l +f +ryP ++l + +g+  + ++l ++g +Dlai +++ ++s+l  + L++e +v+v+ p +   + + +
      CTQ26117.1  99 QELSGSLTVYSRPSIAQCWLVPALGDFSRRYPAISLTVLTGN--DNVNLQRAG-IDLAIYFDDAPSSQLSHHFLMDEAIVPVCTPYY-ARQLQLT 189
                     899***************************************..*********.********************************9.5556666 PP

                     .CGGGGCTSEEEEESTTST...HHHHHHHHHHCTTEEC..EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE..EEE CS
  LysR_substrate  97 .sledLadeplilleegsg...lrdlledalreaglkp..rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp..rel 183
                      +++ L++ +l++ ++  +     d++  + ++ g+++    ++ ++  + ++ ++++ +G+a+  + +v++ l++g+l+ +p+ + +l+  +++
      CTQ26117.1 190 sNPASLRHCTLLHDRQAWSndsGTDEWFSWAQQFGIELpqSSGIGFDRSDLAVIAAMNHVGVAMGRKRLVQKRLESGELI-APFGDMTLKchQHY 283
                     6************654444788999999999999999999999*************************************.******77774777 PP

                     EEEEETTCCCHHHHHHHHHHHH CS
  LysR_substrate 184 ylvyrkgrelspavrafidflr 205
                     y+ + +gr + p++ afi++l+
      CTQ26117.1 284 YVTTLPGR-QWPKIDAFIEWLH 304
                     77777887.***********96 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   1.2   5.1e-23   2.3e-19       2      60 .]      18      76 ..      17      76 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 5.1e-23
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                 +l +f+  a+++sf+ AA+eL l+++avs++i++LEeelg +Lf+R++r+++LT +G+
  CTQ26117.1 18 SRLSTFEVAARHESFALAADELALTPSAVSHRINQLEEELGIQLFVRSHRKVELTREGK 76
                689******************************************************95 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.6e-06     0.034      24      44 ..      36      56 ..      29      56 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.6e-06
      HTH_24 24 AerlglSpstvnrrlkrLeee 44
                A++l l+ps+v+ r+++Leee
  CTQ26117.1 36 ADELALTPSAVSHRINQLEEE 56
                99*****************96 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     2e-05     0.092      13      44 ..      30      61 ..      19      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2e-05
                T-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30 13 gnisatAkaLhvHrnTlryRLrrieellgldl 44
                 + + +A++L + +  +++R++++ee lg+ l
  CTQ26117.1 30 ESFALAADELALTPSAVSHRINQLEEELGIQL 61
                78899************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2365.87
//
Query:       CTQ26118.1  [L=445]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-158  528.1  48.0   1.8e-158  527.9  48.0    1.0  1  GntP_permease    GntP family permease
      4e-14   52.5  55.1      4e-14   52.5  55.1    1.9  2  CitMHS           Citrate transporter
  ------ inclusion threshold ------
       0.43   10.8  28.1       0.18   11.9   4.8    3.9  3  Na_H_antiport_2  Na+-H+ antiporter family


Domain annotation for each model (and alignments):
>> GntP_permease  GntP family permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  527.9  48.0  2.9e-162  1.8e-158       2     440 .]       7     444 ..       6     444 .. 0.99

  Alignments for each domain:
  == domain 1  score: 527.9 bits;  conditional E-value: 2.9e-162
  GntP_permease   2 pllivligvilllllviklklnafvaLllvsllvglvsGmpldkvvksiekGlGgtlGslaiiiglGamlGklledsGaaerialtlikklgkkkv 97 
                    ++ ++li+++l++l+++klk+++f+aLll+s++vg+++Gm   ++v++ie+G+GgtlG+la++iglG++lGk++e+sGaaeri+ltl+++ + + +
     CTQ26118.1   7 VVSTLLISIVLIVLTIVKLKFHPFLALLLASFFVGAMMGMGPLEMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRCRWLS-A 101
                    67899****************************************************************************************9.9 PP

  GntP_permease  98 qwalvlagfivgialFfevglvlLiplvfaiakeakisllklgiplvaalavvhgllpPhPgplavaellgadiGkvllyGlivaiptviiagpll 193
                    ++++vl+g+i+gi+lF+evg+vlLipl+f+iak++++sllkl+ipl++al++vh+++pPhP++l va++lgadiG+v++yGl+v++ +++++gpl+
     CTQ26118.1 102 DVIMVLVGLICGITLFVEVGVVLLIPLAFSIAKKTNTSLLKLAIPLCTALMAVHCVVPPHPAALFVANKLGADIGTVIVYGLLVGLIASLVGGPLF 197
                    ************************************************************************************************ PP

  GntP_permease 194 kkflkevvkeeeelaeeaeeksreekelPsfglslltillPvvlmlvktiaelllpkesaalevvefiGnpvvalliallvaiytlglrrgksikk 289
                     ++l ++ + ++  ae ++ ++ree++lPs+g++l+t+llP+ lmlvkt+ael+++k+ ++++v+efiGnp++a++ia++va+y+lg+rr++ +  
     CTQ26118.1 198 LRLLGNRLPFKPVPAEFSNLDVREESTLPSLGATLFTVLLPIGLMLVKTVAELNMAKGGTLYTVLEFIGNPITAMFIAVFVAYYMLGIRRQMGMGV 293
                    ************************************************************************************************ PP

  GntP_permease 290 vldileealksiaiilliigaGGafkqvlvdsgvgkalaellsnlelspillaflvaallrialGsatVaaltaaglvapiiaqlpgvnlallvla 385
                    +l+++e++++sia+illiigaGGaf+++l++sg+++ la +lsnl+++pilla+lva++l++a+GsatVa++ a+++vap++  +pgv+++++++a
     CTQ26118.1 294 LLTHTENGFGSIANILLIIGAGGAFNAILKSSGLADSLAVILSNLDMHPILLAWLVALILHAAVGSATVAMMGATAIVAPMLPLYPGVSPEIIAIA 389
                    ************************************************************************************************ PP

  GntP_permease 386 igaGslilshvnDagFWlvkeylgltvketlktwtvletilsvvgliivlllslv 440
                    ig+G++ +++v+D++FWlvk+y+g++++et+k++t++++i+s+++l+ ++lls++
     CTQ26118.1 390 IGSGAIGCTIVTDSLFWLVKQYCGASLSETFKYYTTATFIASLLALAATFLLSFI 444
                    ***************************************************9986 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5  55.1   6.7e-18     4e-14       3     300 .]      17     391 ..      15     393 .. 0.70
   2 ?    1.7   2.7     0.021   1.2e+02     102     166 ..     374     441 ..     370     445 .] 0.67

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 6.7e-18
                 xxxxxx........xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS   3 llilek........lrldvvallvlvllvltiee....alsgiaspii...llllgamiigaaleetGlfdrlaakllrlaggkrdllvllvlltalls 86 
                 l++l+         l+l +++++v++++ +++ e    + sgi+ ++    ++++++ i+g+++e +G+++r++ +l r+   + d   ++++l++l+ 
  CTQ26118.1  17 LIVLTIvklkfhpfLALLLASFFVGAMMGMGPLEmvnaIESGIGGTLGflaAVIGLGTILGKMMEVSGAAERIGLTLQRCRWLSAD---VIMVLVGLIC 112
                 5555555667777788888888888888666666333455566666558889**************************99988889...7777777777 PP

                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxx................... RF
      CitMHS  87 afvsn.dgvvlimipivlslakrlkklppl.lliplalaaniggaltpiGtpttraa........arpglslpnllllal................... 156
                 ++  +  + v+++ip+++s+ak+ +++++l l    a++  +  +++++  p+++aa        a++g +++++ll++l                   
  CTQ26118.1 113 GITLFvEVGVVLLIPLAFSIAKK-TNTSLLkL----AIPLCTALMAVHCVVPPHPAAlfvanklgADIGTVIVYGLLVGLiaslvggplflrllgnrlp 206
                 888786888*************8.88887745....5555555566778889*************************7775555555555555555555 PP

                 .........................xxxxxxxxxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxxxxxxxxxx RF
      CitMHS 157 .........................llvgllplvllfmfgvalalpvnap.............................kvkkqkaiieaiarsllpva 201
                                          l+++llp+ l+++++va   + + +                             + ++   ++ +++++ +   
  CTQ26118.1 207 fkpvpaefsnldvreestlpslgatLFTVLLPIGLMLVKTVAELNMAKGGtlytvlefignpitamfiavfvayymlgiRRQMGMGVLLTHTENGFG-- 303
                 5666666666666666666666666666667777777444444444444477777777777777777777777777777777777777777666553.. PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
      CitMHS 202 tilllaykkveWsvlllfaGvfllvgaleqtGilealadllga..ggplvalalvlglial.lsafisnvavaalmapialgmapalgl.lspsplala 296
                 +i          ++ll++++ + + ++l+ +G++++la +l++  + p+    l+++l+al l+a++++++va++ a ++++  p l l   +sp ++a
  CTQ26118.1 304 SIA---------NILLIIGAGGAFNAILKSSGLADSLAVILSNldMHPI----LLAWLVALiLHAAVGSATVAMMGATAIVA--PMLPLyPGVSPEIIA 387
                 333.........4466666666779****************66754453....459****************9666666655..655555335555666 PP

                 xxxx RF
      CitMHS 297 lavg 300
                 +a+g
  CTQ26118.1 388 IAIG 391
                 6655 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.021
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxx RF
      CitMHS 102 vlslakrlkklppllliplalaaniggaltpiGtpttraaarpglslpnlll....................lalllvgllplvl 166
                 +l+l+    + +p  +i++a+++++ g +t++ ++            +++l+                    +a ll+++++++l
  CTQ26118.1 374 MLPLYP---GVSPE-IIAIAIGSGAIG-CTIVTDS------------LFWLVkqycgaslsetfkyyttatfIASLLALAATFLL 441
                 555554...34444.489*********.*******............88888888888888888888844443333333333333 PP

>> Na_H_antiport_2  Na+-H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   7.7   0.00023       1.3       8      66 ..      15      75 ..       9      89 .. 0.82
   2 ?   11.9   4.8     3e-05      0.18      21      83 ..     273     335 ..     260     339 .. 0.91
   3 ?   -1.9   0.6      0.61   3.7e+03       8      34 ..     348     361 ..     341     376 .. 0.46

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00023
  Na_H_antiport_2  8 lvmlvLsllr..vnvvlallisalvgGlvgglsleetieafasGlgggaevAlsyallGaf 66
                     +v++vL++++  ++  lall++++  G++ g++  e+++a++sG+gg      + + lG++
       CTQ26118.1 15 IVLIVLTIVKlkFHPFLALLLASFFVGAMMGMGPLEMVNAIESGIGGTLGFLAAVIGLGTI 75
                     456666665533899********************************99887788888876 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3e-05
  Na_H_antiport_2  21 vlallisalvgGlvgglsleetieafasGlgggaevAlsyallGafAvaisksgltdllvkkv 83 
                       +a++++  + G+   +++   ++  ++G+g+ a++ l     Gaf +++ +sgl+d l+  +
       CTQ26118.1 273 FIAVFVAYYMLGIRRQMGMGVLLTHTENGFGSIANILLIIGAGGAFNAILKSSGLADSLAVIL 335
                      577888888889999*******************************************99766 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.61
  Na_H_antiport_2   8 lvmlvLsllrvnvvlallisalvgGlv 34 
                      lv+l+L              a vg ++
       CTQ26118.1 348 LVALIL-------------HAAVGSAT 361
                      333333.............33333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3630.63
//
Query:       CTQ26119.1  [L=442]
Description: D-serine ammonia-lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-65  221.3   0.3    2.4e-65  220.9   0.3    1.1  1  PALP      Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
       0.18   11.3   0.0       0.26   10.8   0.0    1.2  1  NmrA      NmrA-like family


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.9   0.3   2.6e-69   2.4e-65       3     280 ..      74     399 ..      72     408 .. 0.95

  Alignments for each domain:
  == domain 1  score: 220.9 bits;  conditional E-value: 2.6e-69
                 GCSSS--EEEECCTC....CCCCCE....EEEEEGGGST.TSBTTHHHHHHHHHHHHTT.........................TTTSEEEEEBSSHHH CS
        PALP   3 lgigpTPlvrlprls....kelgvp....lflKlEslnp.tgSfKdRgaeyllarlkeg.........................tgaktvveassGNhg 67 
                 +gi ++++v++p+++    +++g+p    l+lK++s+ p +gS+K+Rg  y +++++e+                          ++  ++++s+GN g
  CTQ26119.1  74 GGIIESEVVAIPAMKrsleQKFGQPisgeLLLKKDSHLPiSGSIKARGGIYEVLTHAEKlaleagllttaddyrklltpefkqfFSQFSIAVGSTGNLG 172
                 67788888888888877778888889999**************************9999999999********************************** PP

                 HHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTT...TTEEE... CS
        PALP  68 ralAaaaallGlkvtivvpadaspekvallrllGaevvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlg...gkpda... 160
                 +++ +++a++G+kvt++++ada ++k+a+lr++G +vve+++dy  av+  +++a+++++++++++ ++ t ++gy+ +g  +++q+    +++da   
  CTQ26119.1 173 MSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEEDYGVAVEQGRKAAESDPNCFFIDDENSRTLFLGYAVAGERLKAQFAkagRVVDAdhp 271
                 ***********************************************************************************9666666688887778 PP

                 ..EEEE-SSSHHHHHHHHHHHHHSTT.-EEEEEEECTTCGGTTCCS..S.SS..B.......SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHH CS
        PALP 161 ..vvvpvGgGgliaGiaaglkerrpd.vrvigvepegsdalarslragrrvtvpvs......dtiadglavgspselafelldrlvdeivtvsdeeale 250
                   v++p+G+Gg  +G+a+glk +++d v+++++ep++s+++  ++ +g ++++ v+       t+adglavg++s ++ ++++rl+d ++t++d+++++
  CTQ26119.1 272 lfVYLPCGVGGGPGGVAFGLKLAFGDhVHCLFAEPTHSPCMLLGVYTGLHDQIAVQdlgidnLTAADGLAVGRASGFVGRAMERLLDGFYTLDDQTMYD 370
                 88*********************9999************************************************************************ PP

                 HHHHHHHHHSB-B-HHHHHHHHHHHHHHHH CS
        PALP 251 amrllarregivvepssaaalaalklreag 280
                 ++ +la +e i +eps+ a++a++ +r ++
  CTQ26119.1 371 MLGWLAAAENIRLEPSALAGMAGA-QRVCA 399
                 ************************.66554 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.9e-05      0.26       4      51 ..     165     213 ..     163     248 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.9e-05
                 SSTTSHHHHHHHHHHHHHT-EEEEEES.-S-SHHHHHHHHSTTEEEES- CS
        NmrA   4 iGaTGrqGksvvrallkaghkvralvR.dtkselakslkeaGvelvkgd 51 
                 +G+TG++G s+  ++++ g+kv + +  d +  + ++l + Gv++v+ +
  CTQ26119.1 165 VGSTGNLGMSIGIMSARIGFKVTVHMSaDARAWKKAKLRSHGVTVVEYE 213
                 7**********************9886266888999**********654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 3756.31
//
Query:       CTQ26120.1  [L=166]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   15.4   0.2      0.031   14.6   0.2    1.4  1  TYA       TYA transposon protein


Domain annotation for each model (and alignments):
>> TYA  TYA transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   1.7e-06     0.031      32      69 ..      11      48 ..       7      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-06
         TYA 32 tkansqqettpassavpenhhhaspqaaqvpspqnGpy 69
                t+a  qq+ tp  + v e hh   pqa  +++ q G  
  CTQ26120.1 11 THAPGQQHDTPFQAVVVEAHHCHQPQAFYAQLRQQGLT 48
                78899**********************99999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1465.31
//
Query:       CTQ26121.1  [L=120]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-12   45.6   1.0      7e-12   45.6   1.0    2.0  2  DUF202           Domain of unknown function (DUF202)
  ------ inclusion threshold ------
       0.19   11.4   0.7       0.42   10.3   0.3    1.8  2  NADH_dh_m_C1     NADH dehydrogenase [ubiquinone] 1 subunit C1
       0.76    9.4   7.5        2.4    7.8   7.6    1.7  1  DUF4131          Domain of unknown function (DUF4131)
        3.3    7.8   0.0        3.3    7.8   0.0    2.7  3  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   1.0   1.6e-15     7e-12       1      63 [.      12      73 ..      12      77 .. 0.86
   2 ?    1.1   0.2      0.12   5.4e+02      18      28 ..      93     103 ..      86     113 .. 0.57

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 1.6e-15
      DUF202  1 rdglAnERTfLaWlRtslalialglallrffltgepsa.lgkilgli.livlgiltllvglvryl 63
                ++gl++ERT LaW Rt+l+ +al ++ ++   ++++ a l ++l+++ l++++++++++ ++r+l
  CTQ26121.1 12 DPGLQPERTSLAWFRTLLGYGALMALAIK---HSWHRAgLPFWLSIGvLAIVAVILWGYTRRRHL 73
                79**************************9...566665146999988799999999999999986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.12
      DUF202  18 lalialglall 28 
                 +al++l+la+l
  CTQ26121.1  93 IALAVLSLAFL 103
                 33333333332 PP

>> NADH_dh_m_C1  NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.89     4e+03       7      23 ..      17      33 ..      16      37 .. 0.69
   2 ?   10.3   0.3   9.4e-05      0.42      12      39 ..      49      76 ..      42      79 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.89
  NADH_dh_m_C1  7 pdnakpnWLkVgLtlGt 23
                  p+ ++  W +  L  G+
    CTQ26121.1 17 PERTSLAWFRTLLGYGA 33
                  56666779988887776 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 9.4e-05
  NADH_dh_m_C1 12 pnWLkVgLtlGttvflWvyLikqHnedv 39
                  p WL +g+    +v+lW y  ++H  dv
    CTQ26121.1 49 PFWLSIGVLAIVAVILWGYTRRRHLMDV 76
                  77*****999999***********9999 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.6   0.00054       2.4       3      50 ..      48     108 ..      19     112 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00054
     DUF4131   3 lplalvllalllllllllllllrr..............rprrrvllllllllllallgfalr 50 
                 lp++l + +l+ +++++l+ + rr              r  r  +l++l++l la+l+++ +
  CTQ26121.1  48 LPFWLSIGVLA-IVAVILWGYTRRrhlmdvddsdflqpRAVRDKFLIALAVLSLAFLFAVTH 108
                 45554444444.44444444444458888888888877777777999999999999888765 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   1.4       1.2   5.3e+03      21      29 ..      30      38 ..      27      39 .. 0.54
   2 ?    7.8   0.0   0.00073       3.3      21      40 ..      52      71 ..      46      72 .. 0.87
   3 ?    1.6   0.3     0.062   2.8e+02      20      34 ..      92     104 ..      89     108 .. 0.51

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
                     XXXXXXXXX CS
  Gram_pos_anchor 21 taaGllall 29
                       ++l+al+
       CTQ26121.1 30 GYGALMALA 38
                     455666665 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00073
                     XXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor 21 taaGllallggllLlvkrRK 40
                     +  G+la+++ +l+++ rR+
       CTQ26121.1 52 LSIGVLAIVAVILWGYTRRR 71
                     678****************8 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.062
                      XXXXXXXXXXXXXXX CS
  Gram_pos_anchor  20 ltaaGllallggllL 34 
                      l a+++l l  ++l+
       CTQ26121.1  92 LIALAVLSL--AFLF 104
                      555554444..4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1060.42
//
Query:       CTQ26122.1  [L=115]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-16   58.3   1.5    7.9e-16   58.3   1.5    2.1  2  DUF202           Domain of unknown function (DUF202)
     0.0012   18.9   1.1     0.0013   18.7   0.6    1.3  1  NMN_transporter  Nicotinamide mononucleotide transporter
     0.0014   18.2   0.3     0.0016   18.0   0.3    1.1  1  DUF1129          Protein of unknown function (DUF1129)
     0.0039   17.5   0.5     0.0049   17.2   0.5    1.1  1  DUF996           Protein of unknown function (DUF996)
     0.0074   16.2   3.3      0.011   15.7   3.3    1.3  1  DctQ             Tripartite ATP-independent periplasmic trans
  ------ inclusion threshold ------
       0.49   10.2   4.1        1.2    8.9   3.4    1.7  2  Trp_oprn_chp     Tryptophan-associated transmembrane protein 


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   1.5   2.6e-19   7.9e-16       1      67 [.      13      79 ..      13      80 .. 0.95
   2 ?    2.8   0.4     0.055   1.6e+02      50      58 ..      96     104 ..      85     114 .. 0.45

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 2.6e-19
      DUF202  1 rdglAnERTfLaWlRtslalialglallrffltgepsalgkilglilivlgiltllvglvrylrrqr 67
                r  lAnERTfLaW+Rt+l+++a+g++l ++  ++    ++ il+l+l +++  ++++g+ r+l +++
  CTQ26122.1 13 RFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPLIREILALLLCLFAGGMAIYGYLRWLNNEK 79
                6779**************************999999999***********************98876 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.055
      DUF202  50 lgiltllvg 58 
                 ++il+l+v+
  CTQ26122.1  96 ISILLLAVV 104
                 222222222 PP

>> NMN_transporter  Nicotinamide mononucleotide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.6   4.5e-07    0.0013      50     100 ..      58     110 ..      46     114 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.5e-07
  NMN_transporter  50 llqlfyivmsiyGwirWsknkkk.av.rkltkkewlilllvivlgtallgfll 100
                      ll lf   m+iyG++rW +n+k+ ++ + l+    l+++ +++l+++++++ll
       CTQ26122.1  58 LLCLFAGGMAIYGYLRWLNNEKAmRLkQDLPYTRTLLVISILLLAVVAAVMLL 110
                      45555555**********99987634445555555544444444444433333 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3   5.2e-07    0.0016      76     167 ..      20     110 ..       2     113 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5.2e-07
     DUF1129  76 npwlmalDnsLlllalfallfgilalfskkkqtasiGlitlllvalvgGlamvlvyrlltre..kkkkkrpplwkrllilllllvvwlvlftlv 167
                  + l+++ ++L +la  + l  +   f +        +++lll+ + gG+a++ + r+l++e  ++ k+  p  ++ll++ +ll++ +++++l+
  CTQ26122.1  20 RTFLAWIRTALGFLAAGVGLDQLAPDFATPLI---REILALLLCLFAGGMAIYGYLRWLNNEkaMRLKQDLPYTRTLLVISILLLAVVAAVMLL 110
                 45678888888888888887777777776333...359**********************9977777777788888888877777777776654 PP

>> DUF996  Protein of unknown function (DUF996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.5   1.6e-06    0.0049      12      86 ..      29     112 ..      23     114 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.6e-06
      DUF996  12 alkeiskavndekifsnaliafilsiialvvailalllvlgalatalelpgleeaas.........lilllllvliiayvllii 86 
                 al  ++  v+ +++  ++ +++i +i al++  +a +++++ ++ +l+++++ +  +         +i++lll++++a+ ll++
  CTQ26122.1  29 ALGFLAAGVGLDQLAPDFATPLIREILALLLCLFAGGMAIYGYLRWLNNEKAMRLKQdlpytrtllVISILLLAVVAAVMLLVV 112
                 666678888999999***********************************9998777999998876666666666666655554 PP

>> DctQ  Tripartite ATP-independent periplasmic transporters, DctQ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   3.3   3.5e-06     0.011      54     127 ..      39     110 ..      22     113 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.5e-06
        DctQ  54 verl.pprvrrlleliadllallfaavliwagwlevaaalfeettpvlglplwwvylvlpigaallalvalarll 127
                 ++ l p  +  l++ i +ll++lfa+ ++ +g+      l++e+ + l+  l + +++l+i+ +lla+va++ ll
  CTQ26122.1  39 LDQLaPDFATPLIREILALLLCLFAGGMAIYGY---LRWLNNEKAMRLKQDLPYTRTLLVISILLLAVVAAVMLL 110
                 556668888999999999999999999******...777777777778877777788999999999999988765 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.28   8.4e+02      65      79 ..      25      39 ..      20      46 .. 0.80
   2 ?    8.9   3.4    0.0004       1.2      62     131 ..      47     111 ..      28     114 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.28
  Trp_oprn_chp 65 lgrrvvgvllalaga 79
                  ++r+++g l+a +g+
    CTQ26122.1 25 WIRTALGFLAAGVGL 39
                  888889988888875 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0004
  Trp_oprn_chp  62 vrglgrrvvgvllalagagaavaalslltdpadaaraaa.aaatgvasaaaaveltawpvlalaggvllll 131
                   + +l+r ++++ll l + g+a+ +   ++++++a r ++    t       +  + +  +la++++v+ll+
    CTQ26122.1  47 ATPLIREILALLLCLFAGGMAIYGYLRWLNNEKAMRLKQdLPYTR------TLLVISILLLAVVAAVMLLV 111
                   56789***********99999999999999999888888555332......33355678888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1014.17
//
Query:       CTQ26123.1  [L=440]
Description: 6-phospho-alpha-glucosidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-65  220.4   0.0      2e-65  219.8   0.0    1.3  1  Glyco_hydro_4   Family 4 glycosyl hydrolase
    2.6e-51  174.7   0.0    3.6e-51  174.2   0.0    1.2  1  Glyco_hydro_4C  Family 4 glycosyl hydrolase C-terminal domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_4  Family 4 glycosyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.8   0.0   2.2e-69     2e-65       2     182 ..       6     184 ..       5     185 .. 0.99

  Alignments for each domain:
  == domain 1  score: 219.8 bits;  conditional E-value: 2.2e-69
                    EEEETTTSSSHHHHHHHHHHTTTTCTEEEEEEE-SSHHHHHHHHHHHHHHHHHCTTTCEEEEESSHHHHHTT-SEEEE---TTHHHHHHHHHHCCH CS
  Glyco_hydro_4   2 iviiGgGStifaklllgdlkkteelsvselaLvDideerldaiqtlakklveeagadlkieattdrkealkdadfVitairvGlekareidekipl 97 
                    +vi+GgGSt+++ ++l++l ++++++ + l+ +D+d  r++ i++++k++ +e++++++++ ttd++ a++d+dfV+++irvG++++re dekipl
     CTQ26123.1   6 VVIAGGGSTFTPGIVLMLLANQDRFPLRSLKFYDNDGARQETIAEACKVILKEQAPEIEFSYTTDPQAAFTDVDFVMAHIRVGKYPMREQDEKIPL 101
                    89********************************************************************************************** PP

                    TTTTT-CTTSSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHHHHHHHHHC CS
  Glyco_hydro_4  98 ryGieqtiqdtvgpggifrglrtipvlleIakdieelcPdawvlnytNPaavvteallrlvpnikavglChsvigvkeelakllt 182
                    r+G+ +  q+t+gpggi++g+r+i+ +le+++++e+++P+aw+lny+NPaa+v+ea++rl+pn k++++C+++ig++ ++a++++
     CTQ26123.1 102 RHGVLG--QETCGPGGIAYGMRSIGGVLELVDYMEKYSPNAWMLNYSNPAAIVAEATRRLRPNAKILNICDMPIGIEGRMAQIVG 184
                    ******..**************************************************************************986 PP

>> Glyco_hydro_4C  Family 4 glycosyl hydrolase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2   0.0     4e-55   3.6e-51       1     208 []     195     415 ..     195     415 .. 0.90

  Alignments for each domain:
  == domain 1  score: 174.2 bits;  conditional E-value: 4e-55
                     EEEETTEEEEEEEE.CTTEEHHHHHHHHHHH.............HHHHHHCTGGGTSHHHHHHHH.HHSSEEECGGHHCTTSS.HCHHHH..... CS
  Glyco_hydro_4C   1 vaGlNHlaWllkle.dkGeDlypelrelvee.............dewleeiaekkaervridllr.rlgllpteysrhyaEYvpylkrea..... 75 
                     ++GlNH++W++++e  +G+Dl+p+lre+v++              +w +++a++k      d+   +++++p++y+++y     ++++++     
      CTQ26123.1 195 YYGLNHFGWWTSIEdLDGNDLMPKLREYVAKygyvppsndphteASWNDTFAKAK------DVQAlDPQTMPNTYLKYY-----LFPDYVvahsn 278
                     79************658***********************999888899988865......455559************.....66665554445 PP

                     SHHHHHHHHHHHHHHHHHHTTTTTHHH.........HHHHSSCHTS-SHHHHHHHHHHTS-EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEE CS
  Glyco_hydro_4C  76 peliekektraevvkevekelfeelek.........eklelekrsgeyavdiieaivtdkprrlvvnvpNnglIpnLpddavVEvpclvdkngir 161
                     pe ++    ++ev++++ek++f ++++          +le++ + ++y+vd++ ai+ ++++r+ ++vpNng+I n+++da+VE+pclv++ng++
      CTQ26123.1 279 PERTR----ANEVMDHREKNVFSACRAiiaagkstaGDLEID-EHASYIVDLATAIAFNTQERMLLIVPNNGAIHNFDADAMVEIPCLVGHNGPE 368
                     77777....99****************888876666555566.59999*********************************************** PP

                     EB--CS-HHHHHHCHHHHHHHHHHHHHHHHHTBHHHHHHHHHCSTT- CS
  Glyco_hydro_4C 162 pvavgelpeqlaallrtniaveeltveAalegdrelalqallldplv 208
                     p++vg++p ++++l+++++ave+l+v+A+ ++++++++qa++l ++v
      CTQ26123.1 369 PLTVGDIPHFQKGLMSQQVAVEKLVVDAWEQRSYHKLWQAITLSKTV 415
                     ******************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3327.41
//
Query:       CTQ26124.1  [L=540]
Description: PTS system alpha-glucoside-specific EIICB component (Includes: Alpha-glucoside permease IIC component; Alpha-glucoside-specific phosphotransferase enzyme IIB component) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-71  239.3  32.3    5.4e-71  239.3  32.3    1.6  2  PTS_EIIC  Phosphotransferase system, EIIC
    1.4e-12   46.8   0.8    2.2e-12   46.2   0.1    1.6  2  PTS_EIIB  phosphotransferase system, EIIB
  ------ inclusion threshold ------
          9    5.4  14.4      0.087   12.0   3.5    2.2  2  EIID-AGA  PTS system mannose/fructose/sorbose family IID comp


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.3  32.3     9e-75   5.4e-71       2     323 ..      10     346 ..       9     347 .. 0.94
   2 ?   -3.0   1.3      0.46   2.7e+03     113     139 ..     376     402 ..     348     410 .. 0.46

  Alignments for each domain:
  == domain 1  score: 239.3 bits;  conditional E-value: 9e-75
    PTS_EIIC   2 dgfmlpiplliagGillglgn.lpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvl 99 
                  +++ p+ l++++Gi++g+++ l  ++  +g +  +  +++ ++ +i++++g++vf n+pl+fa+g ++glak+++g a+la l+++l++n+  +i+++
  CTQ26124.1  10 GAMFTPVLLFPFAGIVVGIAImL-RNPMFVGEALTAPDSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLAKQAQGRACLAVLVSFLTWNY--FINAM 105
                 6899*****************63.4444444444445577777888**********************************************..***** PP

    PTS_EIIC 100 llaagala...........sakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgg 187
                  +++g              s+ ++i+giktl+t+++gai++  l++ l+n++ +   + LP +l++f g++fv+i+ +l ++++++++ ll wp +q g
  CTQ26124.1 106 GMTWGHFFgvdfsaeptagSGLTMIAGIKTLDTSIIGAIVISGLVTALHNRYFD---KPLPVFLGIFQGSSFVVIVAFL-AMIPCAWLTLLGWPKVQLG 200
                 ******99**********************************************...**********************.******************* PP

    PTS_EIIC 188 lnalglllggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagk................eaahiltgefvsvmfGgpgatl 270
                 + +l  +l ++g +lgv+++ fler+lip+GlHh+++ pf+f +   ++ + + q+y+a++                e++++l+g+    +fG +g++l
  CTQ26124.1 201 IESLQAFLRSAG-ALGVWVYIFLERILIPTGLHHFVYGPFIFGP---AVVEGGLQVYWAEHlqafsqsteplktlfpEGGFALHGNS--KVFGSVGIAL 293
                 ***999999999.99***************************55...6999*******7666777777889999999*********6..********** PP

    PTS_EIIC 271 alyiaaflekkskqkkllgsaaltpflfGItepleFgfpfvlnlllfipalla 323
                 aly++a +e++ k+++ll+ a+lt++l+GItepleF+f+f+++ll++++a+la
  CTQ26124.1 294 ALYFTAAPENRVKVAGLLIPATLTAMLVGITEPLEFTFLFISPLLFAVHAVLA 346
                 ***************************************************98 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.46
    PTS_EIIC 113 ilgiktlstgvfgaiivgllaaylynk 139
                 i++++  ++++f +i +gl  + ly +
  CTQ26124.1 376 IPMFHHHASMMFIQIGIGLCFTALYFV 402
                 344444444444444444444444444 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.1   6.3e+03      23      28 ..     409     414 ..     409     416 .. 0.88
   2 !   46.2   0.1   3.7e-16   2.2e-12       3      32 ..     454     483 ..     452     484 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.1
                 EEEEES CS
    PTS_EIIB  23 LRltlk 28 
                 LRl+lk
  CTQ26124.1 409 LRLNLK 414
                 9****9 PP

  == domain 2  score: 46.2 bits;  conditional E-value: 3.7e-16
                 HHHHH-.GGGEEEEEE-SSEEEEEES-GGG CS
    PTS_EIIB   3 IldalGGkdNIesvthCaTRLRltlkDask 32 
                  l+alGG+dNIes+++CaTRLR+ l D++k
  CTQ26124.1 454 FLQALGGADNIESINNCATRLRIALVDMAK 483
                 599************************987 PP

>> EIID-AGA  PTS system mannose/fructose/sorbose family IID component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.5   1.5e-05     0.087     111     193 ..      64     150 ..      60     189 .. 0.79
   2 ?   -1.3   3.2      0.17     1e+03     111     184 ..     312     386 ..     308     407 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.5e-05
    EIID-AGA 111 fwgtlrpilaaiaaslAlqgnilGpilflvvfnvvrlalryyllelGYklGtkaieklsesgllqkltka.....asilGlfvvGali 193
                 f  +  + ++++ ++lA+q +  + + +lv f +++++++ +++++G+  G ++  + ++++ l +++ +      si+G +v+++l+
  CTQ26124.1  64 FRNMPLIFAVGLPIGLAKQAQGRACLAVLVSFLTWNYFINAMGMTWGHFFGVDFSAEPTAGSGL-TMIAGiktldTSIIGAIVISGLV 150
                 5555556677888999****99********************************9999877544.44444011115566666666655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.17
    EIID-AGA 111 fwgtlrpilaaiaaslAlqgnilGpilflvvfn..vvrlalryyllelGYklGtkaieklsesgllqkltkaasil 184
                 + +tl  +l++i+  l  +  ++ p+lf v     +++ +++y++  +G + G  +++++  ++ +  + + as++
  CTQ26124.1 312 IPATLTAMLVGITEPLEFTFLFISPLLFAVHAVlaATMATVMYICGVVG-NFGGGLLDQFLPQNWIPMFHHHASMM 386
                 5678999999999999999999999999885430033344444444444.78888888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3936.61
//
Query:       CTQ26125.1  [L=248]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-32  112.5   0.0      2e-32  112.0   0.0    1.3  1  UTRA      UTRA domain
    4.7e-22   77.4   0.0    1.5e-21   75.8   0.0    1.9  2  GntR      Bacterial regulatory proteins, gntR family
    1.6e-05   24.6   0.1    4.4e-05   23.1   0.0    1.8  2  HTH_DeoR  DeoR-like helix-turn-helix domain
    0.00042   20.2   0.0     0.0011   18.9   0.0    1.7  1  HTH_11    HTH domain
     0.0073   16.2   0.0      0.023   14.6   0.0    1.9  1  MarR_2    MarR family
  ------ inclusion threshold ------
      0.014   15.0   0.0      0.023   14.3   0.0    1.3  1  RP-C      Replication protein C N-terminal domain
      0.018   14.9   0.0      0.049   13.6   0.0    1.7  1  MarR      MarR family
      0.039   13.8   0.1      0.071   12.9   0.1    1.4  1  UPF0728   Uncharacterised protein family UPF0728
       0.08   12.8   0.0       0.21   11.5   0.0    1.7  1  TrmB      Sugar-specific transcriptional regulator TrmB
      0.089   12.5   0.0       0.15   11.7   0.0    1.5  1  HTH_41    Helix-turn-helix domain
        0.1   12.3   0.0       0.17   11.6   0.0    1.4  1  DUF4423   Domain of unknown function (DUF4423)
       0.11   12.5   0.0       0.86    9.7   0.0    2.4  2  HTH_7     Helix-turn-helix domain of resolvase
       0.17   11.9   0.0       0.46   10.5   0.0    1.8  2  HTH_36    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> UTRA  UTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.0   1.5e-35     2e-32       2     140 ..      87     224 ..      86     225 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 1.5e-35
                 CCCSEEEEEEEEEEEE--HHHHHHHTS-TTSEEEEEEEEEEETTEEEEEEEEEEEGGGTTTCHHHHHHCS-HHHHHHHHHTTSEEEEEEEEEEEE--HH CS
        UTRA   2 qglepktevlsleevpasaeiaeaLglpagepvlrieRlrladgepvaleesylpaslvpdlleedleegslyayleerlgvpitraeetiearladae 100
                 qg+e+ ++vl +e++pa+++ia +L+++ +e+++  +R+r++dg+p++le+sy+p +l+ +l   +l egs ++y+e+++g+ i+   et++++lad++
  CTQ26125.1  87 QGKEVVSQVLAFEVMPAPPAIASLLRIKIDERIYFSRRVRYVDGKPLMLEDSYMPVKLFRNLSLSHL-EGSKFDYIEKECGIIISGNYETLTPVLADKQ 184
                 9******************************************************************.******************************* PP

                 HHHHHTSTTT-EEEEEEEEEEETTSCEEEEEEEEEETTTE CS
        UTRA 101 eaelLgisagspvLviervtydadgrpveysrsyyrgdrf 140
                  a+  ++++++p+L+i++++y++ g+ + ys+   +++ +
  CTQ26125.1 185 LARSMNVPEQTPLLRITSLSYSDSGEFLNYSVMFRNASEY 224
                 *******************************998887776 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0   1.1e-24   1.5e-21       2      64 .]       3      65 ..       2      65 .. 0.99
   2 ?   -2.3   0.0       2.6   3.5e+03      13      36 ..     168     191 ..     168     195 .. 0.70

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 1.1e-24
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y+ +++rLr +++s  ++ G++LP e++La+efgV r+t+R+A++ L+ +glv+rr+g+Gt+V
  CTQ26125.1  3 YKSIADRLRLRLNSADFAIGSPLPGEKKLAEEFGVARMTIRKAIDLLVDWGLVVRRHGSGTYV 65
                899***********************************************************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.6
                 HHTTSS-TTSB---HHHHHHHHTS CS
        GntR  13 IlsgelrpGdkLPsereLaaefgV 36 
                 I+sg+++  ++  + ++La  ++V
  CTQ26125.1 168 IISGNYETLTPVLADKQLARSMNV 191
                 677777777765477888888887 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.2e-08   4.4e-05      18      50 ..      29      61 ..      29      68 .. 0.91
   2 ?   -2.6   0.0       3.5   4.8e+03       5      19 ..      80      94 ..      78      97 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.2e-08
    HTH_DeoR 18 eelvellgvSeaTiRRDLneLeeqglltRthGG 50
                ++l+e++gv+ +TiR+ ++ L+  gl++R hG 
  CTQ26125.1 29 KKLAEEFGVARMTIRKAIDLLVDWGLVVRRHGS 61
                589*****************************6 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.5
    HTH_DeoR  5 ilellkqqgklsvee 19
                + e l++qgk  v +
  CTQ26125.1 80 LAEVLRKQGKEVVSQ 94
                678999999866665 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     8e-07    0.0011      19      45 ..      29      55 ..      23      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 8e-07
      HTH_11 19 eeLAeeLnvSrrtvrrdIkaLeelgvp 45
                ++LAee++v r+t+r+ I+ L ++g+ 
  CTQ26125.1 29 KKLAEEFGVARMTIRKAIDLLVDWGLV 55
                68********************99954 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.7e-05     0.023      27      56 ..      31      60 ..      29      63 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-05
                HHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 27 larrlglsksavsrilkrLvaaGLverrpg 56
                la+++g+ + ++ ++++ Lv+ GLv+rr g
  CTQ26125.1 31 LAEEFGVARMTIRKAIDLLVDWGLVVRRHG 60
                9**************************976 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.7e-05     0.023      74     105 ..      28      59 ..      25      75 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
        RP-C  74 NaqLsralglsestlrrhlaaLveaGliirrD 105
                  ++L++++g+++ t+r+ +  Lv+ Gl++rr 
  CTQ26125.1  28 EKKLAEEFGVARMTIRKAIDLLVDWGLVVRRH 59 
                 579***************************95 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.5e-05     0.049      20      51 ..      28      59 ..      23      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.5e-05
                HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR 20 vseLakklgvskstvtrvldrLekkGlieRsk 51
                 ++La+ +gv ++t+ +++d L++ Gl+ R++
  CTQ26125.1 28 EKKLAEEFGVARMTIRKAIDLLVDWGLVVRRH 59
                68****************************97 PP

>> UPF0728  Uncharacterised protein family UPF0728
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   5.2e-05     0.071      12      42 ..      62      92 ..      54     100 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.2e-05
     UPF0728 12 GPyeavgvvkhrterleglqavlkkdGheve 42
                G y a   v+h t+ l+gl +vl+k+G ev+
  CTQ26125.1 62 GTYVARKDVHHETSNLTGLAEVLRKQGKEVV 92
                77899999********************996 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00015      0.21      26      58 ..      29      61 ..      27      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
                CHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 26 deiaeelgvprskvYevLrsLedkGlVerekgr 58
                +++aee gv r ++ +++  L+d GlV r++g+
  CTQ26125.1 29 KKLAEEFGVARMTIRKAIDLLVDWGLVVRRHGS 61
                579***************************987 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.15      10      47 ..      29      64 ..      20      65 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
      HTH_41 10 eelakeleLSvGlvQkALklLeddkaislerrGrlGtf 47
                ++la+e+++ + ++ kA+ lL+d + + + r G  Gt+
  CTQ26125.1 29 KKLAEEFGVARMTIRKAIDLLVDWGLV-VRRHG-SGTY 64
                789********************9998.44555.4565 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00012      0.17      41      85 ..      30      73 ..      24     115 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
     DUF4423 41 elakrlrpkisaeevekalefLlklgllkkded.gkyrqteksltt 85
                +la+ ++  +    ++ka+++L+++gl+ +    g+y+  +   + 
  CTQ26125.1 30 KLAEEFG--VARMTIRKAIDLLVDWGLVVRRHGsGTYVARKDVHHE 73
                6888899..99999*************8776554888776654443 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00062      0.86      25      38 ..      29      42 ..      27      46 .. 0.91
   2 ?   -0.6   0.0       1.1   1.5e+03      10      22 ..      51      63 ..      43      68 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00062
                TTTSSSS---SSSS CS
       HTH_7 25 skIAkevnisRsTv 38
                +k+A+e++++R+T+
  CTQ26125.1 29 KKLAEEFGVARMTI 42
                79***********9 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.1
                HHGGGGSSTTTT- CS
       HTH_7 10 dinrvvkLleeGi 22
                d+  vv+++ +G+
  CTQ26125.1 51 DWGLVVRRHGSGT 63
                7889******995 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00034      0.46      29      54 ..      29      54 ..      22      55 .. 0.91
   2 ?   -3.5   0.0       7.8   1.1e+04      28      37 ..     158     167 ..     157     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00034
      HTH_36 29 etlakrlglsknTvsraikeLeqlGy 54
                + la+ +g+ + T+++ai++L++ G+
  CTQ26125.1 29 KKLAEEFGVARMTIRKAIDLLVDWGL 54
                689*******************9887 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7.8
      HTH_36  28 qetlakrlgl 37 
                 ++++ k +g+
  CTQ26125.1 158 FDYIEKECGI 167
                 68999*9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1866.12
//
Query:       CTQ26126.1  [L=553]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-89  297.1  44.5    3.1e-47  160.5  16.0    2.2  2  Asp-Al_Ex  Predicted Permease Membrane Region
    9.2e-19   67.1   1.7    5.6e-10   38.9   0.4    2.5  2  TrkA_C     TrkA-C domain


Domain annotation for each model (and alignments):
>> Asp-Al_Ex  Predicted Permease Membrane Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7  20.5     1e-45   9.1e-42       2     166 ..      11     179 ..      10     180 .. 0.98
   2 !  160.5  16.0   3.5e-51   3.1e-47       2     166 ..     374     546 ..     373     547 .. 0.98

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 1e-45
   Asp-Al_Ex   2 lalvlalGlllGsikikvglsLGvaggvLivglllGqlgktgpivldisalsllrelgLllFlaavGlsaGpgffsslkkdGlklvllallvtvvplll 100
                 lalv ++Gl++G++ki  g+ +G++ gvL+ g+++G++  +  + l++++l++++e+gL+lF++++G+++Gpgff+sl+ +Gl+l+l+a+l+++++ l+
  CTQ26126.1  11 LALVAVVGLWIGNVKI-RGVGFGIG-GVLFGGIIVGHFVDQAGVALSSPMLHFIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAILIVILGGLV 107
                 899*************.*******9.*************999999****************************************************** PP

   Asp-Al_Ex 101 alvlaklvlkldlallaGllaGalTstpalgaandalaeldlpa.......vgyavtYplgvvllilvaqvla 166
                 ++vl+k ++++ l+ ++G+++Ga+T+tpalga +++l++l++p        ++ya++Yp+g+++++l++++++
  CTQ26126.1 108 TAVLHK-LFNIPLPVVLGIFSGAVTNTPALGAGQQILRDLGVPFevvdqmgMSYAMAYPFGICGILLTMWLVR 179
                 ******.************************************99************************9975 PP

  == domain 2  score: 160.5 bits;  conditional E-value: 3.5e-51
   Asp-Al_Ex   2 lalvlalGlllGsikik.....vglsLGvaggvLivglllGqlgktgpiv..ldisalsllrelgLllFlaavGlsaGpgffsslkkd.Glklvllall 92 
                 +++++ lG+llGsi++       +l+LG+agg+Li++l+lG++g++g+++  +++sa+ +lrelg++lFla+vGl++G +f+++l++  Gl++++++++
  CTQ26126.1 374 VFIGIGLGVLLGSIPLFipgfpAALKLGLAGGPLIMALILGRIGSIGKLYwfMPPSANLALRELGIVLFLAVVGLKSGGDFVATLTQGdGLSWIAYGIF 472
                 79*************9999*99*****************************************************************99********** PP

   Asp-Al_Ex  93 vtvvplllalvlaklvlkldlallaGllaGalTstpalgaandalaeldlpavgyavtYplgvvllilvaqvla 166
                 +t++pll++ +la++++k+++ +l+G+laG++T++pal++an+++a+++++a++ya++Ypl ++l+i++ q+la
  CTQ26126.1 473 ITAIPLLTVGILARMLAKMNYLTLCGMLAGSMTDPPALAFANNLHATSGAAALSYATVYPLVMFLRIITPQLLA 546
                 **********************************************************************9986 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   3.6e-10   3.2e-06       8      66 ..     212     271 ..     205     275 .. 0.88
   2 !   38.9   0.4   6.3e-14   5.6e-10       2      70 .]     291     360 ..     291     360 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.6e-10
                 --GGGTTSBHHHHTHHHH.S-EEEEEE-T-EEES--TT-B--TT-EEEEEEEHHHHHHHH CS
      TrkA_C   8 agsplvGktlkelnlrar.gvlvvairRggeliipsgdtvLeeGDvllvvgspsdlaelr 66 
                 ++  l  + ++++ + ++ ++   +++Rg+ l++p + t +++GD+l++vg p+dl+ ++
  CTQ26126.1 212 ENPNLNQMAIQDVPMLNNdNIVCSRLKRGELLMVPAPGTLIQAGDLLHLVGRPEDLHNAQ 271
                 4667888999**9988899************************************98765 PP

  == domain 2  score: 38.9 bits;  conditional E-value: 6.3e-14
                 EEEEEE--GGGTTSBHHHHTHHHH.S-EEEEEE-T-EEES--TT-B--TT-EEEEEEEHHHHHHHHHHHH CS
      TrkA_C   2 vevtvpagsplvGktlkelnlrar.gvlvvairRggeliipsgdtvLeeGDvllvvgspsdlaelrellg 70 
                 ve +v  + ++ Gk++++l +++r +v + ++ R g+ +++s++  L+ GD+l +vg p+++++++++lg
  CTQ26126.1 291 VERVVVTNEKVLGKKIRDLHVKQRyDVVISRLNRAGVELVASSSASLQFGDILNLVGRPEAIDAVAAELG 360
                 5777888**********************************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4085.66
//
Query:       CTQ26127.1  [L=274]
Description: DNA-damage-inducible protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00034   21.2   0.1     0.0017   19.0   0.0    2.1  3  Bro-N     BRO family, N-terminal domain


Domain annotation for each model (and alignments):
>> Bro-N  BRO family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   9.6e-08    0.0017       7      83 ..      14     100 ..       7     108 .. 0.76
   2 ?   -2.4   0.0      0.45   8.1e+03      33      41 ..     136     144 ..     117     162 .. 0.49
   3 ?   -1.7   0.0      0.26   4.7e+03      37      38 ..     222     223 ..     187     265 .. 0.53

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.6e-08
       Bro-N   7 dengepwfvakdvakiLgysnpskaikkhvdkdnkkkleelvstek...........esgksgqqktvfinesglyeLilrsrkpkak 83 
                 de g  +++a+ +  +L+y+++ +++ k++ k+  ++  + ++  +            sg s++ + + ++++++y +++++++ k+ 
  CTQ26127.1  14 DEAGREYWSARNLGPLLDYKEW-RNFYKVIAKAIISCEASGHPSADhfvetnkmvelGSGASRNLEDFHLSRYACYLVVQNGDPSKPV 100
                 5777888899************.99999999999988855333333555444466555555555555****************99876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.45
       Bro-N  33 kkhvdkdnk 41 
                 ++ ++++nk
  CTQ26127.1 136 RNELKEHNK 144
                 222222332 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.26
       Bro-N  37 dk 38 
                 d+
  CTQ26127.1 222 DS 223
                 22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2170.49
//
Query:       CTQ26128.1  [L=142]
Description: heat shock chaperone [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-21   74.1   0.0    1.1e-20   73.7   0.0    1.1  1  HSP20           Hsp20/alpha crystallin family
    8.2e-06   25.3   0.0    9.2e-05   21.9   0.0    2.0  1  ArsA_HSP20      HSP20-like domain found in ArsA
  ------ inclusion threshold ------
       0.18   11.1   0.0       0.33   10.2   0.0    1.4  2  Glyco_hydro_62  Glycosyl hydrolase family 62


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   1.8e-24   1.1e-20       3     102 .]      39     135 ..      38     135 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 1.8e-24
                 -SSEEEEEEEEE-TT--CCCEEEEEETTEEEEEEE--..---TT----SS---EEEEEE--STTB-TTT-EEEE.ETTEEEEEEEBSS--..------- CS
       HSP20   3 keeeeefevkldvpglkkeelkvkvednrvlvkgeheeeeedekglikerssrkFsrkftLPenvdadkvkasl.kdGvLtvtvpkkepekkkkerkiq 100
                 k+++++++++l+++g+++e+l++++e++r++vkg+ ++ e++ ++l+++  s+ Fs +ftL   +d+++v++++  +G+L++++ ++epe+   +++i+
  CTQ26128.1  39 KSDDNHYRITLALAGFRQEDLDIQLEGTRLVVKGTPQQAEKETTWLHQGLVSQAFSLSFTL---ADNMEVSGATfTNGLLHIDLTRNEPEQI-APQRIA 133
                 6799*********************************************************...99999*99999***************87.999999 PP

                 -- CS
       HSP20 101 iq 102
                 i+
  CTQ26128.1 134 IS 135
                 85 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.5e-08   9.2e-05       1      63 []      42     119 ..      42     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.5e-08
  ArsA_HSP20   1 ddeyvlkldLPfvdkeeidlsrsgdeLtIkig..................nfrRqitLPsvla.rkevtsAkfedgvLeIrF 63 
                 d++y+++l+L ++ +e++d+  +g+ L++k                         ++L  +la ++ev++A+f +g L+I++
  CTQ26128.1  42 DNHYRITLALAGFRQEDLDIQLEGTRLVVKGTpqqaekettwlhqglvsqA----FSLSFTLAdNMEVSGATFTNGLLHIDL 119
                 79******************************9999999999999955544....555555541589************985 PP

>> Glyco_hydro_62  Glycosyl hydrolase family 62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.78   4.7e+03      61      75 ..      16      30 ..      12      35 .. 0.71
   2 ?   10.2   0.0   5.6e-05      0.33     242     265 ..     104     127 ..      80     130 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.78
  Glyco_hydro_62 61 wsemasasqtatsfk 75
                    ++++asa qta + +
      CTQ26128.1 16 FDKLASALQTAGESQ 30
                    678899998886655 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 5.6e-05
  Glyco_hydro_62 242 ansgatwtndishgdlvrnnpdqt 265
                       sgat+tn + h dl rn+p+q 
      CTQ26128.1 104 EVSGATFTNGLLHIDLTRNEPEQI 127
                     359******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1080.18
//
Query:       CTQ26129.1  [L=137]
Description: heat shock chaperone [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-22   78.3   0.0    5.5e-22   77.8   0.0    1.2  1  HSP20       Hsp20/alpha crystallin family
     0.0084   15.6   0.0      0.014   14.9   0.0    1.4  1  ArsA_HSP20  HSP20-like domain found in ArsA


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   6.2e-26   5.5e-22       4     102 .]      42     137 .]      40     137 .] 0.95

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 6.2e-26
                 SSEEEEEEEEE-TT--CCCEEEEEETTEEEEEEE--..---TT----SS---EEEEEE--STTB-TTT-EEEE.ETTEEEEEEEBSS--..-------- CS
       HSP20   4 eeeeefevkldvpglkkeelkvkvednrvlvkgeheeeeedekglikerssrkFsrkftLPenvdadkvkasl.kdGvLtvtvpkkepekkkkerkiqi 101
                 ++e++++++++v+g++++el+++ +dn ++vkg h  e++++++l+++ ++r+F+rkf+L   +++ +v+++   +G+L++++++  pe++ k+r+i+i
  CTQ26129.1  42 VDENHYRIAIAVAGFAESELEITAQDNLLIVKGAHAAEQKERTYLYQGIAERNFERKFQL---AENIHVRGANlVNGLLYIDLERVIPEAN-KPRRIEI 136
                 689*********************************************************...88999998888**************976.******9 PP

                 - CS
       HSP20 102 q 102
                 +
  CTQ26129.1 137 N 137
                 5 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.6e-06     0.014       1      62 [.      44     120 ..      44     121 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.6e-06
  ArsA_HSP20   1 ddeyvlkldLPfvdkeeidlsrsgdeLtIkig..................nfrRqitLPsvlarkevtsAkfedgvLeIr 62 
                 +++y++ +++ ++ ++e++++ +++ L++k                    nf R++ L + ++   v +A + +g L I+
  CTQ26129.1  44 ENHYRIAIAVAGFAESELEITAQDNLLIVKGAhaaeqkertylyqgiaerNFERKFQLAENIH---VRGANLVNGLLYID 120
                 58****************************************************999977765...55888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1087.30
//
Query:       CTQ26130.1  [L=110]
Description: conserved hypothetical protein; putative outer membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-06   27.3   1.9    7.2e-06   26.3   1.9    1.5  1  DUF1375   Protein of unknown function (DUF1375)


Domain annotation for each model (and alignments):
>> DUF1375  Protein of unknown function (DUF1375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   1.9     4e-10   7.2e-06       3      52 ..      34      76 ..      33      77 .. 0.95

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4e-10
     DUF1375  3 vYsGvqtdisaLsgdgagtpapwvslatppltivDlPvslvvDTvlLPyD 52
                +Y+G++  +++L+         +++ ++  l+++D+P+ +v DT+lLP D
  CTQ26130.1 34 TYPGTRSSAQTLG-------DSDTNWGVKSLVALDMPFTAVMDTLLLPWD 76
                69***********.......999999**********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 904.54
//
Query:       CTQ26131.1  [L=408]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-56  188.1   3.2    2.9e-54  182.2   1.0    3.3  4  DUF3748         Protein of unknown function (DUF3748)
      3e-07   30.2   0.3     0.0014   18.5   0.0    3.9  4  PD40            WD40-like Beta Propeller Repeat
  ------ inclusion threshold ------
      0.037   13.7   0.1        6.9    6.4   0.0    3.3  3  Proteasome_A_N  Proteasome subunit A N-terminal signature
      0.077   11.7   0.1         25    3.5   0.0    3.6  4  DPPIV_N         Dipeptidyl peptidase IV (DPP IV) N-terminal r
        2.9    8.9   8.2         17    6.5   2.5    4.0  3  WD40            WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> DUF3748  Protein of unknown function (DUF3748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.1   3.9e+03      71      84 ..      16      29 ..      13      32 .. 0.81
   2 !  182.2   1.0   8.1e-58   2.9e-54       1     123 []      63     179 ..      63     179 .. 0.99
   3 ?    3.6   0.0     0.017        61      71      89 ..     336     354 ..     329     364 .. 0.86
   4 ?   -1.4   0.0       0.6   2.2e+03      72      83 ..     380     391 ..     369     395 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
     DUF3748 71 vhvfsgdgewvsft 84
                + ++ +d++w+ f 
  CTQ26131.1 16 INTWTPDSQWLVFD 29
                56899999999985 PP

  == domain 2  score: 182.2 bits;  conditional E-value: 8.1e-58
     DUF3748   1 hvGvvtvsPveperlvfihGpenpdeqWkydfsrrrGviveeaepekastldalditpPytpGaLrGGshvhvfsgdgewvsftynDhvlkeldteeal 99 
                 hvGvvtv+P++ er+vfihGpe+pd+qW+ydf++rrGv+  +   +++++lda+ditpPytpGaLrGGshvhv+s++g++vsftynDhvl+e+d  +al
  CTQ26131.1  63 HVGVVTVHPTQ-ERYVFIHGPERPDAQWQYDFHHRRGVVAFQ---GAVENLDAMDITPPYTPGALRGGSHVHVYSPNGQFVSFTYNDHVLHERD--PAL 155
                 8**********.***************************988...999**********************************************..*** PP

     DUF3748 100 dlrnvgvavplkavkvekkhprey 123
                 dlrnvgva+p ++v+ + +hprey
  CTQ26131.1 156 DLRNVGVAAPYGPVTPQGQHPREY 179
                 ***********************8 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.017
     DUF3748  71 vhvfsgdgewvsftynDhv 89 
                 +  + + gew++f+ +D++
  CTQ26131.1 336 AFNWHPSGEWLGFALEDRI 354
                 56899************98 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.6
     DUF3748  72 hvfsgdgewvsf 83 
                  vfs+dg+ +++
  CTQ26131.1 380 IVFSPDGKQIAW 391
                 589999999876 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0032        11      15      25 ..      18      28 ..      18      28 .. 0.96
   2 ?   -1.6   0.0      0.78   2.8e+03      16      25 ..     132     141 ..     130     144 .. 0.73
   3 ?    0.2   0.0      0.22   8.1e+02       8      23 ..     330     346 ..     323     351 .. 0.75
   4 !   18.5   0.0   3.9e-07    0.0014      12      38 .]     378     403 ..     373     403 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0032
                EE-TTSSEEEE CS
        PD40 15 sfSPDGkrlaF 25
                +++PD ++l+F
  CTQ26131.1 18 TWTPDSQWLVF 28
                7*********9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.78
                 E-TTSSEEEE CS
        PD40  16 fSPDGkrlaF 25 
                 +SP+G+   F
  CTQ26131.1 132 YSPNGQFVSF 141
                 8****97655 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.22
                 SS..EEEEEE-TTSSEE CS
        PD40   8 pg.negaPsfSPDGkrl 23 
                  + +  a+ + P G +l
  CTQ26131.1 330 ASgIQSAFNWHPSGEWL 346
                 444999999*****998 PP

  == domain 4  score: 18.5 bits;  conditional E-value: 3.9e-07
                 EEEEE-TTSSEEEEEEECT.TCEEEEE CS
        PD40  12 gaPsfSPDGkrlaFsSdRgsGkpdIyv 38 
                  a+ fSPDGk +a+  + + G+ +++v
  CTQ26131.1 378 DAIVFSPDGKQIAWMEEVD-GYRQLWV 403
                 6899***************.******8 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.12   4.4e+02       4      11 ..      15      22 ..      14      22 .. 0.88
   2 ?    2.1   0.0     0.046   1.6e+02       4      12 ..     128     136 ..     127     137 .. 0.87
   3 ?    6.4   0.0    0.0019       6.9       6      13 ..     380     387 ..     377     389 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.12
  Proteasome_A_N  4 slttFSPd 11
                    +++t++Pd
      CTQ26131.1 15 NINTWTPD 22
                    79*****9 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.046
  Proteasome_A_N   4 slttFSPdG 12 
                     ++ ++SP G
      CTQ26131.1 128 HVHVYSPNG 136
                     799*****9 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0019
  Proteasome_A_N   6 ttFSPdGR 13 
                      +FSPdG+
      CTQ26131.1 380 IVFSPDGK 387
                     69*****8 PP

>> DPPIV_N  Dipeptidyl peptidase IV (DPP IV) N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.17   6.2e+02      42      59 ..      11      28 ..       2      31 .. 0.71
   2 ?    0.4   0.0     0.062   2.2e+02      44      62 ..     126     144 ..      89     150 .. 0.73
   3 ?    2.3   0.0     0.016        56     244     283 ..     294     333 ..     265     349 .. 0.69
   4 ?    3.5   0.0    0.0071        25     239     264 ..     379     403 ..     354     407 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.17
                TT.BSEEEEESSTTEEEE CS
     DPPIV_N 42 eeklqlakwSPagdklaf 59
                ++ +++ +w P++++l+f
  CTQ26131.1 11 HQLTNINTWTPDSQWLVF 28
                556677788888888887 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.062
                 .BSEEEEESSTTEEEEEET CS
     DPPIV_N  44 klqlakwSPagdklafvrn 62 
                    +  +SP+g++++f++n
  CTQ26131.1 126 GSHVHVYSPNGQFVSFTYN 144
                 5566678888888888887 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.016
                 TTTSSEEEEEEE.TTSSEEEEEEESSS-C.EEESS-SSS-E CS
     DPPIV_N 244 krdesgflwise.kdGfkHLylfdldgkseikqlTsGeweV 283
                 +++ + + ++++   G  +L+l++ +g++ ++qlT  +  +
  CTQ26131.1 294 NPQATAIAFLMRdDAGVVQLWLISPQGGE-PRQLTHHASGI 333
                 46666677777767889999999999999.99998766555 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.0071
                 -EEE-TTTSSEEEEEEETTSSEEEEE CS
     DPPIV_N 239 evhflkrdesgflwisekdGfkHLyl 264
                  ++f ++d++++ w+ e dG+++L++
  CTQ26131.1 379 AIVF-SPDGKQIAWMEEVDGYRQLWV 403
                 3333.366777777777777777765 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.17   6.3e+02      10      26 ..      11      27 ..       3      36 .. 0.76
   2 ?   -0.0   0.0      0.53   1.9e+03      13      26 ..     129     140 ..     113     149 .. 0.72
   3 ?    6.5   2.5    0.0048        17       6      26 ..     325     355 ..     321     390 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.17
                SSSEEEEE.EETTSSEEE CS
        WD40 10 Hssvtsla.fspdgawla 26
                H   t +  + pd++wl+
  CTQ26131.1 11 H-QLTNINtWTPDSQWLV 27
                4.35555569******96 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.53
                 EEEEEEETTSSEEE CS
        WD40  13 vtslafspdgawla 26 
                 v ++ +sp+g++++
  CTQ26131.1 129 V-HV-YSPNGQFVS 140
                 4.34.899999974 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0048
                 EEESS.SSE.EEEEEETTSSE........EE CS
        WD40   6 tltGH.ssv.tslafspdgaw........la 26 
                  lt H s++ +++ ++p+g w        +a
  CTQ26131.1 325 QLTHHaSGIqSAFNWHPSGEWlgfaledrIA 355
                 67889888*99999*******5555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 3318.13
//
Query:       CTQ26132.1  [L=430]
Description: D-galactonate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-60  202.6  33.5    7.8e-60  202.6  33.5    2.0  2  MFS_1     Major Facilitator Superfamily
    6.8e-07   28.5  28.2    1.6e-06   27.3  27.8    1.9  1  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
       0.07   13.2   0.1       0.07   13.2   0.1    4.0  5  SPC12     Microsomal signal peptidase 12 kDa subunit (SPC12)
       0.59   10.3  12.2        6.1    7.1   3.6    3.6  3  Pkr1      ER protein Pkr1


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.6  33.5   1.7e-63   7.8e-60       1     353 []      21     389 ..      21     389 .. 0.87
   2 !    6.2   3.5   0.00092       4.1     130     170 ..     381     421 ..     379     429 .. 0.67

  Alignments for each domain:
  == domain 1  score: 202.6 bits;  conditional E-value: 1.7e-63
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlg 98 
                 +++++++ + +r++l++a   +++e++gis++e+g +++++a+++ + ++p+G++ dr+G+r ++++++++++++ +ll  fa++l  l+ lr+++G++
  CTQ26132.1  21 IFITVVICYVDRANLAVASA-HIQEEFGISKAEMGYVFSAFAWLYTLCQIPGGWFLDRVGSRLTYFIAIFGWSVA-TLLQgFATGLMSLIGLRAITGIF 117
                 699*****************.******************************************************.777779888889*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 ++ +fp+ + +++ wfp++er++a+g++++g  +G ++  +l  ++ ++l+W++vf++ +++++++ ++  ++ +  pp+  ++ +k e+         
  CTQ26132.1 118 EAPAFPTNNRMVTSWFPEQERASAVGFYTSGQFVGLAFLTPLLIWIQELLSWHWVFIVTGGIGIIWSLI--WFKVYQPPRLTKSISKAELdyirdgggl 214
                 ******************************************************************995..44444444444444444447******** PP

       MFS_1 189 .........kgtgpaplvpawkallkdpvlwillialllfffgfsg...lltllplylqevlglsglllaglllallalvgailallagrlsdr..... 270
                          + ++p + ++ wk++++++    l+ + l+ f+++s+   +lt++p yl +  g++ +l ag++  +++l+++++ ll+g+l+d+     
  CTQ26132.1 215 vdgdapvkkEARQPLSKAD-WKLVFHRK----LVGVYLGQFAVTSTlwfFLTWFPNYLTQEKGIT-ALKAGFMTTVPFLAAFFGVLLSGWLADKlvkkg 307
                 *999998555555555555.********....66666666555555555****************.8***************************77777 PP

       MFS_1 271 lgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 ++   ++   ++++ll++ +++ ++ t+++++++++++l+ fg gf+ ++ ++l+s+lap +  g   g+fn++g+lgg+  p
  CTQ26132.1 308 YSLGVARKTPIICGLLISTCIMGANYTNDPIWIMALMALAFFGNGFA-SITWSLVSSLAPMRLIGLTGGVFNFVGGLGGITVP 389
                 33366777777777777888888888888999999999988899986.89999**************************9766 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00092
       MFS_1 130 fslGailgpllggllasslgWravfyilaivsllafvlfll 170
                  +lG i  pl+ g+la+ +g+  + + + +v+l++++  +l
  CTQ26132.1 381 GGLGGITVPLVIGYLAQDYGFGPALVYISVVALIGALSYIL 421
                 56788888888888888888777777777777777662222 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3  27.8   3.6e-10   1.6e-06      43     437 ..      44     422 ..      15     428 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 3.6e-10
                 H.......HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHH CS
    Sugar_tr  43 e....ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRg 137
                 e    s+  +g ++s+f    ++ ++ +g++ dr+G + ++ ia++  +++++lq++a+    +  li  R ++Gi+   a  +    +    p++ R 
  CTQ26132.1  44 EefgiSKAEMGYVFSAFAWLYTLCQIPGGWFLDRVGSRLTYFIAIFGWSVATLLQGFAT---GLMSLIGLRAITGIFEAPAFPTNNRMVTSWFPEQERA 139
                 256668889**************************************************...89999999***********999999999999*****9 PP

                 HHHHHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHH.HHHC.HHHHHHHHHHHHHHHH CS
    Sugar_tr 138 alvslyqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlak.lrge.edadrelaeekdslea 233
                   v++y    t G++v+  f + l   +++   w++ + ++  + ++ +++++ +   Pr + +     +a+  + + + g  +++ +  +e  + l +
  CTQ26132.1 140 SAVGFY----TSGQFVGLAFLTPLlIWIQELLSWHWVFIVTGGIGIIWSLIWFKVYQPPRLTKSIS---KAELDYIRdGGGLvDGDAPVKKEARQPLSK 231
                 999987....66777777666666577777777**********************99999765444...444434441333323333333333333444 PP

                 HHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHH..HH CS
    Sugar_tr 234 eqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvtiivgvvnfvatfvaiflvdrfGRRtllllGaa..gm 327
                       a+wk ++ +     +l+ + + q++   t +++++ ++ +++++ g++     +++t+ + +  f + + + +l d++ ++  + lG+a  + 
  CTQ26132.1 232 ------ADWKLVFHR-----KLVGVYLGQFAVTSTLWFFLTWFPNYLTQEKGITALkagFMTTVPFLAAFFGVLL-SGWLADKLVKK-GYSLGVArkTP 317
                 ......589999999.....45555666888889999*****************998878888777776555555.55*******99.55555442255 PP

                 HHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHH CS
    Sugar_tr 328 aicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfagla 426
                 +ic ++++  ++++ + +     + i++++  +a+f+ g++++ w lvs l+p+++ +++  +  +v  l  + + l++ ++++ +g ++  lv+ +++
  CTQ26132.1 318 IICGLLIS-TCIMGANYT--NDPIWIMALMA-LAFFGNGFASITWSLVSSLAPMRLIGLTGGVFNFVGGLGGITVPLVIGYLAQDYG-FGPALVYISVV 411
                 67777777.444444442..45666666655.589999*************************************************.77777777777 PP

                 HHHHHHHHHHS CS
    Sugar_tr 427 vlfiifvfffv 437
                 +l     ++ +
  CTQ26132.1 412 ALIGALSYILL 422
                 77666666654 PP

>> SPC12  Microsomal signal peptidase 12 kDa subunit (SPC12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.6       1.6   7.1e+03      37      48 ..      17      28 ..      13      30 .. 0.44
   2 ?   13.2   0.1   1.6e-05      0.07      16      70 ..      82     136 ..      74     137 .. 0.93
   3 ?   -2.4   0.2       1.2   5.3e+03      27      43 ..     243     259 ..     241     269 .. 0.62
   4 ?   -3.0   0.3       1.8   8.2e+03      34      42 ..     271     279 ..     247     295 .. 0.55
   5 ?    0.5   1.1      0.15   6.7e+02      22      43 ..     387     408 ..     380     422 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
       SPC12 37 tlyillagvvlt 48
                tl++++++vv++
  CTQ26132.1 17 TLIMIFITVVIC 28
                334444444433 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.6e-05
       SPC12  16 ilvlsaviafivGyitqdlkltlyillagvvltllvvvPpWpfYnrnplkWlkpk 70 
                 + +++a++++ v  ++q + + l+ l++  ++t +   P++p  nr    W +++
  CTQ26132.1  82 LTYFIAIFGWSVATLLQGFATGLMSLIGLRAITGIFEAPAFPTNNRMVTSWFPEQ 136
                 567899*********************************************9876 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.2
       SPC12  27 vGyitqdlkltlyilla 43 
                 vG ++ ++ +t  ++++
  CTQ26132.1 243 VGVYLGQFAVTSTLWFF 259
                 56666666666555544 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 1.8
       SPC12  34 lkltlyill 42 
                   +t +  +
  CTQ26132.1 271 KGITALKAG 279
                 333333333 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.15
       SPC12  22 viafivGyitqdlkltlyilla 43 
                 ++ +++Gy++qd+     ++ +
  CTQ26132.1 387 TVPLVIGYLAQDYGFGPALVYI 408
                 677899*****99764333332 PP

>> Pkr1  ER protein Pkr1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.6    0.0014       6.1      18      64 ..     140     188 ..     126     191 .. 0.87
   2 ?    3.5   0.1     0.017        78      52      71 ..     251     270 ..     248     272 .. 0.85
   3 ?    3.5   0.2     0.018        79      12      63 ..     304     358 ..     297     367 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0014
        Pkr1  18 ptlliatnvsFaaLllvllaLlvats..niHfivLlllalgLwasinWF 64 
                 +++   t+  F+ L ++   L+++ +  + H +++++  +g+++s++WF
  CTQ26132.1 140 SAVGFYTSGQFVGLAFLTPLLIWIQEllSWHWVFIVTGGIGIIWSLIWF 188
                 5556678899**************9999********************9 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.017
        Pkr1  52 llalgLwasinWFvaeLkka 71 
                 +++  Lw+ ++WF + L++ 
  CTQ26132.1 251 AVTSTLWFFLTWFPNYLTQE 270
                 68899********9888765 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.018
        Pkr1  12 ftpgvtptlliatnvsFaaLllvllaLlvats.niHfivLlllalg..LwasinW 63 
                  + g++ ++ + t +++ +L+ + ++ +  t+  i +++L++la++   +asi+W
  CTQ26132.1 304 VKKGYSLGVARKTPIICGLLISTCIMGANYTNdPIWIMALMALAFFgnGFASITW 358
                 5667788888999999999999999999999999**********87224788888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3097.91
//
Query:       CTQ26133.1  [L=56]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      159  (0.00886831); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 425.13
//
Query:       CTQ26134.1  [L=382]
Description: galactonate dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-55  187.7   0.0      3e-55  187.2   0.0    1.2  1  MR_MLE_C  Enolase C-terminal domain-like
    5.4e-30  104.0   0.0    9.9e-30  103.2   0.0    1.4  1  MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.2   0.0   3.4e-59     3e-55      13     219 ..     138     355 ..     127     356 .. 0.94

  Alignments for each domain:
  == domain 1  score: 187.2 bits;  conditional E-value: 3.4e-59
                 HT-SEEEEETSSS........HHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESSSSTTTHHHHHHHHHHHH.SSEEE CS
    MR_MLE_C  13 qgfravKlkvggd........dvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEPvppeddleglaelrara.sipia 102
                  gf+++Kl+  ++         v+  v  v+++rea+g  +++++ +D+++++++++A  +++ele++++l++EEPv + ++ e + +l+a + +ipia
  CTQ26134.1 138 IGFDTFKLNGCEEmgiidnsrAVDAAVNTVAQIREAFG--NEIEFGLDFHGRVSAPMAKVLIKELEPYRPLFIEEPVLA-EQAEYYPRLAA-QtHIPIA 232
                 379******55559*****9999**************5..577**********************99************.57********5.449**** PP

                 ESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCSSHHHHHHHHHHHHTTTTBEEEEEEGGGGH......TSGCSBSS CS
    MR_MLE_C 103 agEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgsgglglaaslhlaaaipnllileyfldael......leeellee 195
                 agE+++sr +f+++leag+v i+qpd+s++gGite+ k+a +aea++v +apH++ g+++laa+lh+     n+ ++e++++ ++      l+    +e
  CTQ26134.1 233 AGERMFSRFEFKRVLEAGGVAILQPDLSHAGGITECYKIAGMAEAYDVGLAPHCPLGPIALAACLHVDFVSHNAVFQEQSMGIHYnkgaelLDFVKNKE 331
                 ******************************************************889********************************99999999** PP

                 SSEEETTEEECTSSSBTSSEB-HH CS
    MR_MLE_C 196 plevedGrvtvpdgpGlGveldee 219
                 ++++e G+++   +pGlGve+de+
  CTQ26134.1 332 DFNMEGGFFKPLMKPGLGVEIDEA 355
                 **********999*********86 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   1.1e-33   9.9e-30      28     117 .]      15     107 ..       4     107 .. 0.96

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 1.1e-33
                 EEEEEEEECTTEEEEEEEE-STTGHHHHHHHHHHHHHHHHTTSBTTHHHHHHHHHHHHCSS.....CHHHHHHHHHHHHHHHHHHTTSBHHHHTT CS
    MR_MLE_N  28 lvlvkietseGvvGigeatsvggraetikaelddhlapllvgkdaanisdlaqllkravlg.....nmsAkaaidmAlwDlkakalnlpladLlG 117
                   ++kiet+eG+vG+ge++++g ra+t++a++++   ++l+g+d+a+i+dl+q+++r  ++     +msA+a+id+AlwD+k+k+ln+p+++L+G
  CTQ26134.1  15 WMFLKIETDEGIVGWGEPVIEG-RARTVEAAVHE-FGDYLIGQDPARINDLWQVMYRGGFYrggpiMMSAIAGIDQALWDIKGKVLNAPVWQLMG 107
                 6799******************.**********9.**************************9***9****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2856.95
//
Query:       CTQ26135.1  [L=205]
Description: 2-oxo-3-deoxygalactonate 6-phosphate aldolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-29  102.5   0.2    2.4e-29  102.2   0.2    1.0  1  Aldolase         KDPG and KHG aldolase
      1e-05   24.9   0.0      8e-05   22.0   0.0    2.4  2  TMP-TENI         Thiamine monophosphate synthase
  ------ inclusion threshold ------
       0.12   12.4   0.0        0.2   11.6   0.0    1.3  1  S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal 


Domain annotation for each model (and alignments):
>> Aldolase  KDPG and KHG aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.2   4.1e-33   2.4e-29       7     182 ..       6     182 ..       2     193 .. 0.92

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 4.1e-33
                 CHSEEEEE--SSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHH.HHHHHH-TTSEEEEES--SHHHHHHHHHCT-SEEEESS--HHHHHHHHHTTS-E CS
    Aldolase   7 eakvvpvivikdkedalplaeaLvagGlrvlevtlrteaaldai.rvlrkerpdllvgaGtvlnaeqlaeakeaGaqfvvsPGltadllkaavdlkipl 104
                 +++++++++    ++al  + a+++ G  ++e+ l +++  + i +v+ +  +++l+gaGtvl++eq+++ ++ G+  +v+P +++++++ av   +++
  CTQ26135.1   6 NLPLIAILRGITPDEALAHVGAVIEAGFDAVEIPLNSPQWEKSIpQVVDAYGEQALIGAGTVLQPEQVDRLAAMGCRLIVTPNIQPEVIRRAVGYGMTV 104
                 6789999999999*************************9999884677788899********************************************* PP

                 EEEESSHHHHHHHHHTT--EEEETTTTTTTHHHHHHHHCTTT.TT-EEEEBSS--TTTHHHHHTSTTBS-EEESCCC-H CS
    Aldolase 105 lPGvstpseimlaldlGlkrlklfPaeasGGvkalkalagpf.aqvrfiPtGGispanvrdylalpsvlvvgGswlvea 182
                  PG +t+se   ald G ++lk+fP+ a+G    +kal ++  ++v +   GG++p+n+ ++++++ v +  Gs l  a
  CTQ26135.1 105 CPGCATASEAFSALDAGAQALKIFPSSAFG-PDYIKALKAVLpPEVPVFAVGGVTPENLAQWINAGCVGAGLGSDLYRA 182
                 ******************************.67777777776359****************************998776 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.094   5.6e+02      88     122 ..      51      86 ..      43      93 .. 0.69
   2 !   22.0   0.0   1.3e-08     8e-05     135     175 ..     131     173 ..      86     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.094
    TMP-TENI  88 earellgpdliiGlSv.hsleeaeeaealgadYigv 122
                 ++    g++++iG+ +  ++e++ +++a+g+  i+ 
  CTQ26135.1  51 QVVDAYGEQALIGAGTvLQPEQVDRLAAMGCRLIVT 86 
                 566677888899986515666688888888776665 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 1.3e-08
    TMP-TENI 135 eplgleglkelaeale..iPvvaiGGitlenvaevleagadgv 175
                 ++ g +++k+l++ l   +Pv+a+GG+t+en+a+ ++ag+ g 
  CTQ26135.1 131 SAFGPDYIKALKAVLPpeVPVFAVGGVTPENLAQWINAGCVGA 173
                 678999********99999********************9886 PP

>> S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.3e-05       0.2      16      60 ..      52      94 ..      49     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.3e-05
                     TTTTTTTSS---S---TTB-TTSHHHHHHHHHHHHHHHHHHTTSB CS
  S-AdoMet_synt_C 16 ivdtYgglaahgggafsgKdptkvDrsaayaaryvaknlvaagla 60
                     +vd+Yg+ a  g+g++    p++vDr aa  +r +    ++ +++
       CTQ26135.1 52 VVDAYGEQALIGAGTVL--QPEQVDRLAAMGCRLIVTPNIQPEVI 94
                     8***********99885..79************998776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1505.96
//
Query:       CTQ26136.1  [L=292]
Description: 2-oxo-3-deoxygalactonate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-92  307.8   0.4    5.6e-92  307.7   0.4    1.0  1  DGOK      2-keto-3-deoxy-galactonokinase


Domain annotation for each model (and alignments):
>> DGOK  2-keto-3-deoxy-galactonokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.7   0.4   3.1e-96   5.6e-92       1     285 [.       9     285 ..       9     286 .. 0.98

  Alignments for each domain:
  == domain 1  score: 307.7 bits;  conditional E-value: 3.1e-96
        DGOK   1 DWGtsslRaylldadgevlaerasdeGilalaaaefeaaleallgdwleaaekalpviaaGmvGsrqGWveapyvavPaalaalaaalarvaegrevai 99 
                 DWG+++lRa+l++  +e+l++r+s++G+++l+ ++ +a+l++++++w++    a+pv++aGmvGs+ GW+ apy+++Paa++++ ++l+ v  g++++i
  CTQ26136.1   9 DWGSTNLRAWLYQ-GEECLESRQSEAGVTRLNGRSPAAVLAEITQHWRD---GATPVVMAGMVGSNVGWKIAPYLPLPAAFSDIGQQLTAV--GDNIWI 101
                 9***********9.899*******************************7...479************************************..****** PP

        DGOK 100 vPGlaqeseaelDVmRGEEtqilGalaleeseealvvlpGthsKWvrvedgriesfsTfmtGElfalLsehsiLgrslaaaeadeeaFaegveaaaape 198
                 +PGl+ +++++++VmRGEEtq+lGa   + + ++++v+pGth+KWv +++++i++f+T++tGEl++lL +hs++g++l+++e +++aFa+g++++ ++ 
  CTQ26136.1 102 IPGLCVSRDDNHNVMRGEETQLLGAR--ALAPSSVYVMPGTHCKWVLADRRQIHDFRTVLTGELHHLLLQHSLVGAGLPPQETSAAAFAAGLQRGINNP 198
                 *************************8..788999*************************************************************9999 PP

        DGOK 199 sllsklFsvRaaallgklaaeaaasyLsGlLIGaEvaalrsalaekeevvLvGeealaalYaralaalglevrvvdaeeatlaGlla 285
                 ++l +lF+vRa ++lg+l++e+++++LsGlLIGaEva+l++++a+++++ Lv+ ++l+++Y++a+aa g ev++v +++a+++G+ +
  CTQ26136.1 199 AVLPQLFEVRASHVLGALPREQVSEFLSGLLIGAEVATLSDTFAGQQAISLVAGSSLTSRYQQAFAAIGREVSAVAGDTAFQTGIRS 285
                 ************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2155.39
//
Query:       CTQ26137.1  [L=229]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-26   91.2   7.2      1e-25   90.6   7.2    1.3  1  FCD          FCD domain
    2.9e-15   55.7   0.0    6.5e-15   54.5   0.0    1.6  1  GntR         Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
      0.026   14.4   0.1      0.086   12.7   0.1    1.8  2  TFIIE_alpha  TFIIE alpha subunit
      0.089   12.9   0.4        1.1    9.5   0.3    2.3  2  DUF2673      Protein of unknown function (DUF2673)
       0.23   11.5   1.7        4.5    7.3   0.0    3.0  4  DUF1488      Protein of unknown function (DUF1488)


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   7.2   2.8e-29     1e-25       3     123 ..      99     218 ..      97     220 .. 0.94

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 2.8e-29
         FCD   3 yelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrr.lrrlalssperleeslaeH 100
                  e+R l+Ep++ar aa+rat+ dlae+e +l ++++  +++d  +f ead ++H+a+++ ++npvl++l   ++   r+ ++r+++ +++++ ++l+eH
  CTQ26137.1  99 SEVRNLVEPAIARWAAERATSSDLAEIESALNDMIANNQNRD--AFNEADIRYHEAVLQSVHNPVLQQLSVAISSLQRAvFERTWMGDEGNMPKTLQEH 195
                 59***********************************88776..5*****************************9999989999999************ PP

         FCD 101 raildAirardadaAraamrrHl 123
                 +a++dAir +d+daA++a+   +
  CTQ26137.1 196 KALFDAIRHQDSDAAEQAALTMI 218
                 ******************97766 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   1.8e-18   6.5e-15       3      64 .]       7      68 ..       5      68 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 1.8e-18
                HHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  3 eqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                ++++  L  +I+sg + pG++LP+e eL++ef++sr+ +Re+ r L a+ l+e ++ rG+fV
  CTQ26137.1  7 DRIVISLGKQIVSGKYVPGSALPAEAELCEEFETSRNIIREVFRSLMAKRLIEMKRYRGAFV 68
                788889999***************************************************99 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   2.4e-05     0.086      29      64 ..      30      65 ..      26      89 .. 0.84
   2 ?   -1.8   0.0      0.77   2.8e+03      39      59 ..      77      97 ..      72     104 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.4e-05
                 BHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEEEEEE CS
  TFIIE_alpha 29 teedlakelkidlnelrklLnrLyearlvkykrrrd 64
                 +e +l +e +  +n++r++   L  +rl+++kr r 
   CTQ26137.1 30 AEAELCEEFETSRNIIREVFRSLMAKRLIEMKRYRG 65
                 58899****************************997 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.77
                 S-HHHHHHHHHHHHHCTSEEE CS
  TFIIE_alpha 39 idlnelrklLnrLyearlvky 59
                 +d ++l  +L + y+ rl++ 
   CTQ26137.1 77 LDTEVLQWVLENDYDPRLISA 97
                 577788889999999999985 PP

>> DUF2673  Protein of unknown function (DUF2673)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3    0.0003       1.1      52      72 ..      71      91 ..      65      99 .. 0.89
   2 ?    0.8   0.0      0.15   5.2e+02      52      73 ..      99     120 ..      93     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0003
     DUF2673 52 anqynmlspdvqkwvmenttd 72
                 nq+n l  +v +wv+en  d
  CTQ26137.1 71 RNQWNYLDTEVLQWVLENDYD 91
                59****************887 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.15
     DUF2673  52 anqynmlspdvqkwvmenttda 73 
                 ++  n++ p + +w  e +t +
  CTQ26137.1  99 SEVRNLVEPAIARWAAERATSS 120
                 5567999*********999865 PP

>> DUF1488  Protein of unknown function (DUF1488)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0013       4.5      45      71 ..      29      55 ..      22      63 .. 0.84
   2 ?   -1.8   0.0      0.86   3.1e+03      49      70 ..      93     114 ..      82     126 .. 0.72
   3 ?   -2.5   0.0       1.5   5.4e+03      60      75 ..     124     139 ..     114     143 .. 0.75
   4 ?    1.9   0.0     0.061   2.2e+02      49      68 ..     194     213 ..     165     220 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0013
                --HHHHHHHHHHTHHHHHHHHHHHHHT CS
     DUF1488 45 lreedllaaFeahRfdieeaaerliea 71
                ++e++l + Fe+ R  i+e++++l+++
  CTQ26137.1 29 PAEAELCEEFETSRNIIREVFRSLMAK 55
                4599*******************9965 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.86
                 HHHHHHHHTHHHHHHHHHHHHH CS
     DUF1488  49 dllaaFeahRfdieeaaerlie 70 
                  l++a  ++R  +e a +r  +
  CTQ26137.1  93 RLISAMSEVRNLVEPAIARWAA 114
                 5677888888888877666554 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHTT--- CS
     DUF1488  60 dieeaaerlieaeggd 75 
                 +ie a   +i++++ +
  CTQ26137.1 124 EIESALNDMIANNQNR 139
                 6888888888666554 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.061
                 HHHHHHHHTHHHHHHHHHHH CS
     DUF1488  49 dllaaFeahRfdieeaaerl 68 
                 +  a+F+a R++  +aae++
  CTQ26137.1 194 EHKALFDAIRHQDSDAAEQA 213
                 55689**********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1790.39
//
Query:       CTQ26138.1  [L=377]
Description: Outer membrane protein, OMP85 family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-11   44.6   6.6    1.7e-11   44.2   6.6    1.1  1  Bac_surface_Ag  Surface antigen


Domain annotation for each model (and alignments):
>> Bac_surface_Ag  Surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   6.6   9.3e-16   1.7e-11      46     324 .]     109     377 .]      71     377 .] 0.78

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 9.3e-16
                     E............................GGGTBS.S-EEEEEEEEEEEEEEESSSEEEE..EEEEEEEEEEES---BHHHHHHHHSCS--EEEE CS
  Bac_surface_Ag  46 e............................sdsdesdsyrtksvgfsvslgrpltenysls..lglsvqknkilkdsssennrnvssasklqtgks 110
                                                  ++++e ++y+ + ++++ +l r+l     l   + l+ q+++  + + ++++ n       q    
      CTQ26138.1 109 FdrdlwrvfvdgsiantptyywgqgfhagDKDNEKEKYTAQVLTLRPTLYRQLIDHVYLGagWSLAAQNADEMDHDDRPKIEN-----TPQGPSV 198
                     033333333333334467777777888889999999***************96644444412334444444444444444444.....5799*** PP

                     EEEEEEEEEEEEEESSSSS-SSEEEEEEEEEEE-..TTSSS-EEEEEEEEEEEEESSTTSSSEEEEEEEEEEEEESSSS-.--GGG-B-BSSTTS CS
  Bac_surface_Ag 111 ltsslslslsydtrddalfPtrGvllklrleftgpllggdvsylkldakasyyvpltkekdlvlaarvalgyisgygtkdelpfyerFyaGGsns 205
                     + s  s+++++d rd   +P+rG +++lr++   p lg+d ++  ++ ++s y++l+  ++ vla+   + +     t+ e+p +    +G  + 
      CTQ26138.1 199 FSSGASIDINWDDRDFVPNPRRGQYANLRYTHYAPGLGSDTRFEEFQLHYSHYQALS--EKSVLAWEADGAF-----TQGEVPWSMMPLLGSDER 286
                     ********************************************************9..7899999999999.....4456************** PP

                     STEE-TT-BS-EEEEEEE--BSEEEEEEEEEEEE-SSS-GGTTEEEEEEEEEEEEE-TT--TTTTTTS--TTTS-EEEEEEEEEEE.ETTEEEEE CS
  Bac_surface_Ag 206 vRGfesgglgprdesgdalGGdsyavaslElrfplpflkkqnsvrlalFfDaGnvwdkegqspsssrsasstaeirasvGvgLrwq.sPlGPlrf 299
                     +RG+  g   ++          + +++ lE+r +l++       ++++ + aG++    g+s ss      + ++  s+Gvg r+   P    rf
      CTQ26138.1 287 MRGYYQGRYRDK----------NVVSGQLEYRRQLTWR-----HGIVAWAGAGTM----GPSLSSLN----NGRWLPSAGVGYRFEfKPRVNVRF 358
                     ***********5..........99***********775.....79*********8....55555443....357899999999998459****** PP

                     EEEEEEE-STT--EESEEEEECEEE CS
  Bac_surface_Ag 300 dyAiplkkedgdktqrFqFgiGttF 324
                     dy+i      g + ++F+F++G++F
      CTQ26138.1 359 DYGI------GNGSSGFYFQVGEAF 377
                     ****......66899********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2857.13
//
Query:       CTQ26139.1  [L=353]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00083   19.5   1.5     0.0027   17.9   1.1    1.9  2  OMP_b-brl  Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.5   0.00027       4.8     125     178 .]     193     248 ..     133     248 .. 0.64
   2 !   17.9   1.1   1.5e-07    0.0027      48     154 ..     210     339 ..     186     351 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00027
   OMP_b-brl 125 dsdtdfglglgaGveyala.dnwslkaeYrytdlks.dadndlknntfqvgvgyrF 178
                 +  +  g ++g G   + + +nw+  ++ +yt +     d+ +++ tf+  vgyrF
  CTQ26139.1 193 FRLDFKGTTYGMGTTLVGGvGNWFTVLDANYTQTRFdILDGSIDALTFSPRVGYRF 248
                 33344444555555444444599998888887776656778899999999999999 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.5e-07
   OMP_b-brl  48 vgagyefndnvgvegglsysgdkdysgsgktdikinllsvpvnagyafnlsds...vlpyggaGlg..........................ytkvevd 117
                 +g    ++ n++  ++++y++++ +      d +i+ l+++ ++gy+f ++      lp g+++l                           +      
  CTQ26139.1 210 GG----VG-NWFTVLDANYTQTRFDIL----DGSIDALTFSPRVGYRFSTPSVdalHLPAGKLNLWvgsmyqdvqqefkgslsdlsmpspmlQ------ 293
                 22....22.677779999999999999....*****************986666666799999988888888886666666666666666551...... PP

   OMP_b-brl 118 vsgng.............asdsdtdfglglgaGveyaladnwslkaeYry 154
                     +             + + + ++ +++ +G++y+l++n+++  e+  
  CTQ26139.1 294 ----NmvnlanqdnngrfDVKQHLQSPWNVLVGAQYELTQNFNITTEFGF 339
                 ....044444444446669999999*******************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2674.56
//
Query:       CTQ26140.1  [L=270]
Description: putative hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-67  225.5   0.0      1e-66  225.3   0.0    1.0  1  Hydrolase_3     haloacid dehalogenase-like hydrolase
    2.4e-16   60.0   0.0    4.4e-08   32.9   0.0    2.1  2  S6PP            Sucrose-6F-phosphate phosphohydrolase
    1.1e-09   38.9   3.9    0.00022   21.6   0.1    3.3  3  Hydrolase       haloacid dehalogenase-like hydrolase
    0.00016   21.7   0.0     0.0056   16.8   0.0    2.5  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase
    0.00041   20.8   1.4       0.48   10.8   0.0    3.0  3  HAD             haloacid dehalogenase-like hydrolase
    0.00074   19.6   0.2      0.017   15.2   0.0    2.6  3  HAD_2           Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.019   15.0   0.1       0.16   12.1   0.0    2.2  2  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.3   0.0     4e-70     1e-66       1     255 []       6     264 ..       6     264 .. 0.95

  Alignments for each domain:
  == domain 1  score: 225.3 bits;  conditional E-value: 4e-70
                  EEEEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC...SEEEEGGGTEE.ECTTTEEEEE--B-HHHHHHHHHHHHHT CS
  Hydrolase_3   1 ialDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvleelgld...lpvialNGali.ddekgkilykstiskedvkeiikllken 94 
                  ia+D+DGTLl  d++is+  k+ai+ ++e+g++vv++TGR++ +v+++l+el+++    ++i++NGal+ +  +g +++++ +s +d++ + +l +e 
   CTQ26140.1   6 IAIDMDGTLLLPDHTISPAVKAAIAAARERGVNVVLTTGRPYAGVHSYLKELHMEqpgDYCITYNGALVqKAGDGSTVAQTALSYDDYRFLEQLSREV 103
                  89****************************************************9999***********9999************************* PP

                  TCEEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHHHH CS
  Hydrolase_3  95 nveillytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelksklnklltitssskgyleimpkgvsKgtal 192
                  + +++  + +++y+ n + s+++++e    +      + e+ +++ ++ k+++++++  ld++++++++++++++t+ +s +++lei+ k v+Kgt++
   CTQ26140.1 104 GSHFHALDRNTLYTANRDISYYTVHESYVATIPLVFCEAEKMDPEIQLLKVMMIDEPAILDQAIARIPAEVKEKYTVLKSAPYFLEILDKRVNKGTGV 201
                  *****************66666666666666666666777788899**************************************************** PP

                  HHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 193 kklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVakal 255
                  k la  l+i++ee++a+GD+eNDi+M+e ag+gvAm+na + vk+aA+++tksn edGVa a+
   CTQ26140.1 202 KSLADALGIKPEEIMAIGDQENDIAMIEFAGVGVAMDNAIPAVKEAANFITKSNLEDGVAFAI 264
                  ************************************************************887 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.1e-09     8e-06       3     124 ..       4     126 ..       2     150 .. 0.83
   2 !   32.9   0.0   1.7e-11   4.4e-08     147     215 ..     178     245 ..     153     269 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.1e-09
                 EEEEE-TBTTTB.S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHHHHHHHHT----.SEEEETTTTEEEE...TTEE-HHHHHHHHTT--HHHHHH CS
        S6PP   3 lllvsdLDntlvdgdnealarlnelleaeerkdvllvfaTGRsldsakellkeknllkP.dvlitsvGteiyy.geelvpdkaweeildekwdrqavve 99 
                 +l+++d+D+tl+ +d+    + ++ + a++++ v +v+ TGR ++ + + lke ++ +P d++it  G+ +++ g +++  +   ++ d+++ +q  +e
  CTQ26140.1   4 KLIAIDMDGTLLLPDHTISPAVKAAIAAARERGVNVVLTTGRPYAGVHSYLKELHMEQPgDYCITYNGALVQKaGDGSTVAQTALSYDDYRFLEQLSRE 102
                 689********************************************************99*********99955566666666666677777788888 PP

                 HHHT-TTEEE--GGG-BTTBEEEEE CS
        S6PP 100 alaklpeLtlQpeeeqrehKvSyfv 124
                 + +++++L + + +  +   +Sy+ 
  CTQ26140.1 103 VGSHFHALDRNTLYTAN-RDISYYT 126
                 88888888776655544.3566665 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 1.7e-11
                 EEEEEETTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE-TT--HHHHH CS
        S6PP 147 vkviyssgkdlDvlPkraskgeAlryLakkleleleqilvcGdsgnDeellignvlgVvVgnaqeellq 215
                   v+ s+  +l +l kr +kg  ++ La+ l++++e+i+  Gd++nD+++++    gV + na ++ ++
  CTQ26140.1 178 YTVLKSAPYFLEILDKRVNKGTGVKSLADALGIKPEEIMAIGDQENDIAMIEFAGVGVAMDNAIPA-VK 245
                 556678889*****************************************************9988.33 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.2    0.0041        11       1      13 [.       3      15 ..       3      22 .. 0.86
   2 !   11.5   0.0   0.00011      0.28     119     156 ..      21      58 ..      16      77 .. 0.86
   3 !   21.6   0.1   8.5e-08   0.00022     173     210 .]     195     232 ..     146     232 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0041
                SSEEEEESBTTTB CS
                xxxxxxxxxxxxx RF
   Hydrolase  1 iktvvfDkdGTLt 13
                ik++++D+dGTL+
  CTQ26140.1  3 IKLIAIDMDGTLL 15
                89**********8 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00011
                 BHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 119 vkpeaaeavasLkaagievvlltgdnpetaeraanqlG 156
                 + p ++ a+a+ +++g++vvl tg   + +++ +++l 
  CTQ26140.1  21 ISPAVKAAIAAARERGVNVVLTTGRPYAGVHSYLKELH 58 
                 778999*************************9999988 PP

  == domain 3  score: 21.6 bits;  conditional E-value: 8.5e-08
                 TTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 173 kpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                   +  g++ +++ L++kpee++++GD  nD+a+++ Ag
  CTQ26140.1 195 VNKGTGVKSLADALGIKPEEIMAIGDQENDIAMIEFAG 232
                 4478899999***********************99886 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.2e-06    0.0056       1      51 [.       6      57 ..       6      70 .. 0.83
   2 ?    2.3   0.0      0.07   1.8e+02       6      30 ..     231     255 ..     226     269 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.2e-06
                 EEEESTTTSEE.TTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHH CS
  Hydrolase_6  1 flfDidGvLwr.gdkaipgaaealnalraagkpvvllTNnsskseeeyakkl 51
                 +++D+dG+L+  ++++ p ++ a+ a r++g++vvl T +      +y+k+l
   CTQ26140.1  6 IAIDMDGTLLLpDHTISPAVKAAIAAARERGVNVVLTTGRPYAGVHSYLKEL 57
                 579*****9983666779999****************987766666666666 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.07
                  TTTSEETTEE-TTHHHHHHHHHHTT CS
  Hydrolase_6   6 dGvLwrgdkaipgaaealnalraag 30 
                   Gv +  d+aip ++ea n++++++
   CTQ26140.1 231 AGVGVAMDNAIPAVKEAANFITKSN 255
                  577788899***********99987 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2      0.24   6.3e+02       3      13 ..       8      18 ..       6      21 .. 0.80
   2 !    7.0   0.1    0.0028       7.2      86     123 ..      21      58 ..      14      68 .. 0.86
   3 !   10.8   0.0   0.00019      0.48     151     187 ..     194     228 ..     163     229 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.24
         HAD  3 fDfDgTLldgd 13
                 D+DgTLl  d
  CTQ26140.1  8 IDMDGTLLLPD 18
                6******9765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0028
         HAD  86 ldpgalellaahraaGdrvvvvSgglrplvepllaelg 123
                 + p +++++aa+r++G+ vv+ +g +   v+  l+el 
  CTQ26140.1  21 ISPAVKAAIAAARERGVNVVLTTGRPYAGVHSYLKELH 58 
                 56999*********************999998887775 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00019
         HAD 151 gegkvaalrewlaaegegidleevvayGDspsDlpll 187
                 + +k + +++   a   gi++ee++a+GD ++D+++ 
  CTQ26140.1 194 RVNKGTGVKS--LADALGIKPEEIMAIGDQENDIAMI 228
                 4444466777..66678899999***********996 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.7   1.8e+03       4      11 ..       9      16 ..       6      33 .. 0.73
   2 ?    1.1   0.0      0.14   3.6e+02      72      94 ..      39      60 ..      18      75 .. 0.71
   3 !   15.2   0.0   6.8e-06     0.017     139     176 ..     199     236 ..     168     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.7
       HAD_2  4 DlDgTlld 11
                D+DgTll 
  CTQ26140.1  9 DMDGTLLL 16
                9****985 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.14
       HAD_2 72 ekkkkevkpydgvkelLeeLkea 94
                   + + +py gv+++L+eL+ +
  CTQ26140.1 39 VVLT-TGRPYAGVHSYLKELHME 60
                4444.567899999999999765 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 6.8e-06
       HAD_2 139 eviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                 + ++ + + l++k+ee++ +GD+ +Di     ag+ v+
  CTQ26140.1 199 TGVKSLADALGIKPEEIMAIGDQENDIAMIEFAGVGVA 236
                 57888999*******************99999998776 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.3   7.6e+02      35      49 ..      29      43 ..      25      64 .. 0.88
   2 ?   12.1   0.0   6.1e-05      0.16      12      37 ..     203     227 ..     160     237 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.3
                    HHHHHHCT-EEEEES CS
  Hydrolase_like 35 iagAnnaGwksvLVl 49
                    ia+A++ G++ vL++
      CTQ26140.1 29 IAAARERGVNVVLTT 43
                    89*********9985 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 6.1e-05
                     HHHHHH---GGGEEEEES-TTTHHHH CS
  Hydrolase_like  12 falevlgsdpeevlmiGDrlatDiag 37 
                     + + +lg++pee+++iGD+ + Dia+
      CTQ26140.1 203 SLADALGIKPEEIMAIGDQ-ENDIAM 227
                     567788*************.****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2004.96
//
Query:       CTQ26141.1  [L=804]
Description: DNA gyrase, subunit B (type II topoisomerase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-60  201.2   0.0    1.7e-59  200.2   0.0    1.6  1  DNA_gyraseB    DNA gyrase B
    8.3e-54  181.9   0.1    1.5e-53  181.1   0.1    1.5  1  GyrB_insert    DNA gyrase B subunit insert domain
    8.8e-31  105.9   0.1    2.4e-30  104.5   0.1    1.8  1  DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
    3.3e-22   79.1   0.1    8.3e-22   77.8   0.1    1.7  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    2.7e-18   66.1   0.0    6.9e-18   64.8   0.0    1.7  1  Toprim         Toprim domain
     0.0018   18.1   0.1     0.0044   16.8   0.1    1.7  1  HATPase_c_3    Histidine kinase-, DNA gyrase B-, and HSP90-li


Domain annotation for each model (and alignments):
>> DNA_gyraseB  DNA gyrase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.2   0.0   5.8e-63   1.7e-59       1     173 [.     221     390 ..     221     391 .. 0.99

  Alignments for each domain:
  == domain 1  score: 200.2 bits;  conditional E-value: 5.8e-63
  DNA_gyraseB   1 GlkdfveelnkdkkelikevlsvegekaveevievevalqwtssysenilsFvNniatpeGGtHvdgfksaltktlneyakkkkllkkkeekisgedi 98 
                  G+k fve+lnk+k++++ +++++++ek  +  i vevalqw+++++eni++F+Nni++++GGtH++gf++a+t+tln y++k+++ kk++ + +g+d 
   CTQ26141.1 221 GIKAFVEYLNKNKTPIHPNIFYFSTEK--DG-IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDA 315
                  9**************************..88.****************************************************************** PP

  DNA_gyraseB  99 regltavvsvkipepqFeGQTKekLgnsevksivekvvseeleafleenkeeakkilekaveaakareaarkare 173
                  regl+avvsvk+p+p+F +QTK+kL +sevks+ve+ ++e l+++l en+++ak ++ k+++aa+areaar+are
   CTQ26141.1 316 REGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRARE 390
                  *************************************************************************98 PP

>> GyrB_insert  DNA gyrase B subunit insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.1   0.1     5e-57   1.5e-53       1     166 [.     564     729 ..     564     730 .. 0.99

  Alignments for each domain:
  == domain 1  score: 181.1 bits;  conditional E-value: 5e-57
  GyrB_insert   1 AeLvvnedappisgeaLeeLvrqyrkaeaiIkRlsrrydeevLeallelpeldeedledeaaaeawakalearlnqeeekgeryeveveedeeeekal 98 
                  A+L++n++ap+++ge Le+Lv ++++++++I R++rr+++++L++l++ p+l+e+dl+de+++++w+++l ++ln++e++g++ +++++e++e +++ 
   CTQ26141.1 564 ATLHTNANAPALAGEPLEKLVAEFNATQKMIGRMERRFPKALLKELIYQPTLTEADLADEQKVTRWVNTLVSELNEKEQHGSQWKFDLHENKELQHFE 661
                  89************************************************************************************************ PP

  GyrB_insert  99 levertqhGnekesvldadffesadYralaelaeklkgLieegAyikRGekeqavesFkealeWLleE 166
                  + +++++hG+++++ ld++f+ +++Yr++ +l+ekl+gL+ee+Ayi+RGe++q+v sF++al+WL++E
   CTQ26141.1 662 PVIRVRTHGVDTDYPLDNEFIMGPEYRRICALGEKLRGLMEEDAYIERGERRQPVASFEQALDWLVKE 729
                  ******************************************************************99 PP

>> DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.1   8.2e-34   2.4e-30       2      63 .]     732     793 ..     731     793 .. 0.97

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 8.2e-34
  DNA_gyraseB_C   2 kkveiqRfKGLGEmnpeqLweTTmdpetRrLlqvtiedaeeadelfstLmGkkvepRrefie 63 
                    ++++iqR+KGLGEmnp+qLweTTmdp++Rr+l+vt++da +ad+lf+tLmG+ vepRr+fie
     CTQ26141.1 732 RGLSIQRYKGLGEMNPDQLWETTMDPDSRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIE 793
                    5789*********************************************************8 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.1   2.8e-25   8.3e-22       2     111 ..      32     174 ..      31     175 .. 0.84

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 2.8e-25
                 HHHHHHHHHHHHHHHHHHH..HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT..............GTCSTTCHHCSTCHTSTSSSHHHHHHHHH CS
   HATPase_c   2 dekrLrqiisnlvdNavkf..atkageieveikaseddlvisveDnGiGipkedlk..............klfekfsqddstkrggggtGlGlsivkkl 84 
                 d ++L++++ ++vdNa+++  a+++++i v+i+  + d+++sv+D+G+Gip  +++              + ++kf++ +s+k++gg +G+G+s+v++l
  CTQ26141.1  32 DGTGLHHMVFEVVDNAIDEalAGYCKDIVVTIH--S-DNSVSVQDDGRGIPTGIHPeegvsaaevimtvlHAGGKFDD-NSYKVSGGLHGVGVSVVNAL 126
                 7899***************7667**********..6.9******************************877777****.******************** PP

                 HHHTTTEEEE.....................EEETTTEEEEEEEEESS CS
   HATPase_c  85 velmgGeiwv.....................esepgrGttftftlple 111
                 +++++  i++                      ++++ Gt ++f++ le
  CTQ26141.1 127 SQKLELVIQRdnkvhkqmyehgvpqaplavtGETDKTGTMVRFWPSLE 174
                 **9998888855555555555555555554433335599999999886 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   2.3e-21   6.9e-18       1     102 [.     419     531 ..     419     532 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 2.3e-21
                 EEEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHS.TTEEEEE..ECTTTHHHHHH......HHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHT.. CS
      Toprim   1 elvivEgpsdaktiakalgsgfqavtaslGhildlet.efkpvye..eiedkkkvlka......lkelakradeiilatDpDreGeaiawellevlk.. 88 
                 el++vEg+s+ +++++ +++++qa+++++G+il++e+ +f++++   e+ + +++l++       ++ ++r++ ii++tD+D++G++i+++ll++++  
  CTQ26141.1 419 ELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKaRFDKMLSsqEVATLITALGCgigrdeYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYrq 517
                 699**********************************988888889999999999999***999*********************************88 PP

                 ..HHHTTTEEEEEESS CS
      Toprim  89 ..ellenkigrvefse 102
                   e++e+  g+v++++
  CTQ26141.1 518 mpEIVER--GHVYIAQ 531
                 8878888..9999986 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.5e-06    0.0044       5      47 ..      38      80 ..      33     142 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.5e-06
  HATPase_c_3  5 kAlaelvdNsld.Adaen...vkievnknrgktgeivieDdGkGmse 47
                   ++e+vdN++d A a +   + ++++     +++++++DdG G++ 
   CTQ26141.1 38 HMVFEVVDNAIDeALAGYckdIVVTIHS----DNSVSVQDDGRGIPT 80
                 5699********9666662224455555....469*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 5771.79
//
Query:       CTQ26142.1  [L=357]
Description: gap repair protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-40  139.1   0.0    1.6e-40  138.9   0.0    1.1  1  SMC_N     RecF/RecN/SMC N terminal domain
    4.1e-10   39.9   0.0    5.1e-10   39.6   0.0    1.2  1  AAA_15    AAA ATPase domain
    3.2e-08   34.3   0.2    8.5e-08   32.9   0.1    1.6  1  AAA_23    AAA domain
    1.5e-06   28.3   0.0    3.6e-06   27.0   0.0    1.7  1  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    3.8e-06   26.7   0.1    6.7e-06   25.8   0.1    1.4  1  AAA_27    AAA domain
     0.0007   19.3   0.1     0.0035   17.0   0.0    2.1  2  AAA_29    P-loop containing region of AAA domain
     0.0045   17.5   0.0      0.025   15.1   0.0    2.0  2  ABC_tran  ABC transporter
  ------ inclusion threshold ------
      0.022   15.1   0.0       0.77   10.1   0.0    2.3  2  Aim19     Altered inheritance of mitochondria protein 19
      0.054   12.2   0.0       0.17   10.5   0.0    1.7  2  AAA_13    AAA domain
      0.054   13.9   3.7        1.3    9.3   3.7    2.6  1  AAA_16    AAA ATPase domain


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.9   0.0   9.1e-44   1.6e-40       2     218 ..       3     354 ..       2     356 .. 0.97

  Alignments for each domain:
  == domain 1  score: 138.9 bits;  conditional E-value: 9.1e-44
                 EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsis 100
                 l+rl i++F+++  ++++l +s++f+++vG+NGSGK+++l+Ai ++LG  + +++rs ++ ++i + ++ a+v +++++     e++       e+ i 
  CTQ26142.1   3 LTRLLIKDFRNI--ESADLALSPGFNFLVGANGSGKTSVLEAI-YTLG--HGRAFRSLQIGRVIRH-EQDAFVLHGRLQG----EER-------ETAIG 84 
                 789*********..7****************************.****..8999***********9.9*********998....333.......589** PP

                 EEEETTSEEEEEETTEEE-H.HHHHHHHHCTT-STT............................................................... CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx............................................................... RF
       SMC_N 101 rrvkrkgeseykingkevtk.kevsellesagiske............................................................... 135
                  ++ ++g+s+++i+g++ +k +e+++l++++ i++e                                                               
  CTQ26142.1  85 LTKDKQGDSKVRIDGTDGHKvAELAHLMPMQLITPEgftllnggpkyrrafldwgcfhneagfftawsnlkrlvkqrnaalrqvsryaqlrpwdlelip 183
                 *******************99****************************************************************************** PP

                 ....................................................................................CS-HHHHHHHHHHHH CS
                 ....................................................................................xxxxxxxxxxxxxxx RF
       SMC_N 136 ....................................................................................lLSgGektLvalaLl 150
                                                                                                     +LS+G+ +L+++aL+
  CTQ26142.1 184 laeqisrwraeysaaivedmadtcqqflpeftltfsfqrgweketdyaevlernferdrmltytahgphkadfriradgapvedTLSRGQLKLLMCALR 282
                 *************************************************************************************************** PP

                 HH.....HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-.SCEEEEEEEETTE CS
                 xx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
       SMC_N 151 fA.....iqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka.dklvgvtkvengv 218
                 +A     ++   +++lyl+D+++++LD++++  ++++lk+++  +Q++v ++++e++ ++ dk+ +++ ve+g 
  CTQ26142.1 283 LAqgeflTRVSGRRCLYLIDDFASELDDARRGLLSSRLKATQ--SQVFVSAISAEHVMDMsDKNSKMFRVEKGK 354
                 **999977777899*************************999..*********999888879999999998876 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   2.8e-13   5.1e-10       1      48 [.       1      48 [.       1     133 [. 0.83

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 2.8e-13
      AAA_15  1 MkIkkikikNFRslkdveidlseeltvliGkNnsGKSsilealdlFln 48
                M ++++ ik FR ++++++ ls+ +++l+G+N+sGK+s+lea++ +  
  CTQ26142.1  1 MSLTRLLIKDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGH 48
                9999***************************************98755 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   4.7e-11   8.5e-08       1      39 [.       5      43 ..       5     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 4.7e-11
      AAA_23  1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAi 39
                +L i+ fr ++  ++ +s+g++ ++G NG+GKT++l+Ai
  CTQ26142.1  5 RLLIKDFRNIESADLALSPGFNFLVGANGSGKTSVLEAI 43
                688***********************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0     2e-09   3.6e-06       1      23 [.      25      47 ..      25      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2e-09
      AAA_21  1 lnvliGpNgsGKSnLLdaldlla 23
                +n+l+G+NgsGK+++L+a++ l 
  CTQ26142.1 25 FNFLVGANGSGKTSVLEAIYTLG 47
                8******************9884 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   3.8e-09   6.7e-06       1      92 [.       1      93 [.       1     123 [. 0.80

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3.8e-09
      AAA_27  1 MrlerLdLeryGkftdrsldfsaeeadlhliyGpNEAGKstalrAisdllfGipert...kdnflhdakkLrigavleeadg.eelefaRrkgrkk 92
                M l+rL ++ + +++   l++s   +++ +++G+N +GK+++l+Ai  l +G   r+    +  +h+++   + ++l+ ++  +++ +++ k+  +
  CTQ26142.1  1 MSLTRLLIKDFRNIESADLALS---PGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSlqiGRVIRHEQDAFVLHGRLQGEEReTAIGLTKDKQGDS 93
                8999*****************8...9**************************9888722245799************7544414556666655544 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     2e-06    0.0035      16      45 ..      16      46 ..       3      53 .. 0.77
   2 ?   -1.2   0.0      0.97   1.7e+03       6      15 ..     135     144 ..     132     149 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2e-06
      AAA_29 16 tieidlkg.atlltGpsGsGKSTllDAiqal 45
                ++++ l+  + +l+G++GsGK+++l Ai +l
  CTQ26142.1 16 SADLALSPgFNFLVGANGSGKTSVLEAIYTL 46
                444444444899****************987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.97
      AAA_29   6 lvNWgtfdgh 15 
                  ++Wg f+++
  CTQ26142.1 135 FLDWGCFHNE 144
                 679****985 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.4e-05     0.025      15      35 ..      27      47 ..      15      90 .. 0.87
   2 ?   -0.1   0.0      0.67   1.2e+03     105     123 ..     261     283 ..     158     289 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.4e-05
                EEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 15 aivGenGaGKStLlkllagll 35
                 +vG nG+GK+++l++++ l 
  CTQ26142.1 27 FLVGANGSGKTSVLEAIYTLG 47
                59***************9875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.67
                 TS....GGS-HHHHHHHHHHHHH CS
                 xx....xxxxxxxxxxxxxxxxx RF
    ABC_tran 105 sp....ssLSgGqkqrvalaral 123
                 ++     +LS Gq + ++ a  l
  CTQ26142.1 261 DGapveDTLSRGQLKLLMCALRL 283
                 33345689999999988877655 PP

>> Aim19  Altered inheritance of mitochondria protein 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.11     2e+02      64      95 ..      31      61 ..      30      68 .. 0.91
   2 ?   10.1   0.0   0.00043      0.77      64      87 ..     142     165 ..     136     188 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
       Aim19 64 enGsGfltAWSllYllvngkksikslrrgkvv 95
                 nGsG ++   ++Y l +g+ +++sl+ g+v+
  CTQ26142.1 31 ANGSGKTSVLEAIYTLGHGR-AFRSLQIGRVI 61
                59****************98.79999999985 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00043
       Aim19  64 enGsGfltAWSllYllvngkksik 87 
                 +n +Gf tAWS l  lv+ +++  
  CTQ26142.1 142 HNEAGFFTAWSNLKRLVKQRNAAL 165
                 799***************998864 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   9.2e-05      0.17      17      50 ..      24      54 ..       7      80 .. 0.73
   2 ?   -1.3   0.0      0.36   6.4e+02     598     689 ..     159     255 ..     142     269 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.2e-05
      AAA_13 17 riNliYGwNGaGKTtLSrllrslelgetepkfan 50
                 +N++ G+NG+GKT++ +++  l +g+   +f +
  CTQ26142.1 24 GFNFLVGANGSGKTSVLEAIYTLGHGR---AFRS 54
                58**************99999987666...3444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.36
      AAA_13 598 sqksskikelkrl..lneieseYellfkevkrasendd..sayllpNvlRrlLEtf...fkfpgsirkdkelleefegedkalkksllrflntgSHsds 689
                 +q+ +++ +++r+  l++++ e   l ++++r ++++    +  ++ +  ++L  f   f+f ++ +k+ + +e +e+  + ++ ++l ++  g H + 
  CTQ26142.1 159 KQRNAALRQVSRYaqLRPWDLELIPLAEQISRWRAEYSaaIVEDMADTCQQFLPEFtltFSFQRGWEKETDYAEVLER--NFERDRMLTYTAHGPHKAD 255
                 455555555555444888888888888888888774441255668899999999999888888888888888888888..6788888888888888764 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.7   0.00075       1.3      25      47 ..      24      46 ..       8     332 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00075
      AAA_16 25 elvllsGesGvGKsslvrellra 47
                +  +l+G+ G+GK+s+++++++ 
  CTQ26142.1 24 GFNFLVGANGSGKTSVLEAIYTL 46
                56689**************9962 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2506.02
//
Query:       CTQ26143.1  [L=366]
Description: DNA polymerase III, beta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-46  157.9   0.0      2e-40  137.7   0.0    3.1  3  DNA_pol3_beta    DNA polymerase III beta subunit, N-terminal 
    5.5e-46  155.6   0.0    4.5e-40  136.5   0.0    3.4  3  DNA_pol3_beta_2  DNA polymerase III beta subunit, central dom
    3.3e-45  152.8   0.8    6.5e-45  151.9   0.2    1.8  2  DNA_pol3_beta_3  DNA polymerase III beta subunit, C-terminal 
  ------ inclusion threshold ------
      0.089   12.8   0.0        1.5    8.9   0.0    2.5  2  TubC_N           TubC N-terminal docking domain


Domain annotation for each model (and alignments):
>> DNA_pol3_beta  DNA polymerase III beta subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.0   4.5e-44     2e-40       1     121 []       1     120 [.       1     120 [. 0.99
   2 !    9.8   0.0   0.00019      0.84       3      85 ..     128     210 ..     126     229 .. 0.85
   3 !    6.9   0.1    0.0015       6.7      31     100 ..     279     348 ..     272     359 .. 0.83

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 4.5e-44
                    -EEEEEHHHHHHHHHHHHTTSSSTTSSGGGGEEEEEEETTEEEEEEE-SSEEEEEEEESEEEEE-EEEEEEHHHHHHHHHHSSTTSEEEEEEETTE CS
  DNA_pol3_beta   1 mkftiereellkelekvakvisnRntlpiLsgvllevkdsqlsltgtDleisiestisaeseeeegkvlvparllldivkaLpndkkvkisvneqk 96 
                    mkft+ere+llk+l++v++ +  R+tlpiL ++ll+v+d  lsltgtDle+++ +++++++++e g+++vpar+++di++ Lp+++++++++++++
     CTQ26143.1   1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALVQPHEAGATTVPARKFFDICRGLPEGAEIAVQLEGDR 96 
                    9*********************************************************************************************** PP

                    EEEEEETTEEEEEE-BEGGGS---- CS
  DNA_pol3_beta  97 lliiksgssrfslstlsaeeypnlp 121
                    +l+  sg+srfslstl+a ++pnl+
     CTQ26143.1  97 MLVR-SGRSRFSLSTLPAADFPNLD 120
                    ****.******************96 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00019
                    EEEEHHHHHHHHHHHHTTSSSTTSSGGGGEEEEEEETTEEEEEEE-SSEEEEEEEESEEEEE-EEEEEEHHHHHHHHHHSSTT CS
  DNA_pol3_beta   3 ftiereellkelekvakvisnRntlpiLsgvllevkdsqlsltgtDleisiestisaeseeeegkvlvparllldivkaLpnd 85 
                    ft+ ++ +   +e ++ ++ ++ +   L+g+l e + s+l   +tD    +  ++++e +  + +v+vp + ++++++ L+ +
     CTQ26143.1 128 FTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPLEASLPNHSVIVPRKGVIELMRMLDGG 210
                    667777777777777888888888889*********************************999*****************974 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0015
                    GEEEEEEETTEEEEEEE-SSEE.EEEEEESEEEEE-EEEEEEHHHHHHHHHHSSTTSEEEEEEETTEEEEE CS
  DNA_pol3_beta  31 sgvllevkdsqlsltgtDleis.iestisaeseeeegkvlvparllldivkaLpndkkvkisvneqkllii 100
                     gv l v+++ql +t+ + e + +e  +    + +e ++  + +++ld++ aL   ++v i + ++  +++
     CTQ26143.1 279 RGVRLYVSENQLKITANNPEQEeAEEILDVAYAGTEMEIGFNVSYVLDVLNALKC-ENVRILLTDSVSSVQ 348
                    6899************99887526667777777899******************9.99*999999777666 PP

>> DNA_pol3_beta_2  DNA polymerase III beta subunit, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.1e-05     0.049       2     116 .]       5     118 ..       4     118 .. 0.86
   2 !  136.5   0.0     1e-43   4.5e-40       1     116 []     129     243 ..     129     243 .. 0.99
   3 ?    1.1   0.0     0.098   4.4e+02      28      45 ..     279     296 ..     262     358 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
                      EEHHHHHHHHHCCGGGS-SSTTSGGGGEEEEEEECCEEEEEEE-SSEEEEEEEEEEECTTCEEEEEEEHHHHHHHHHHHTSSSSEEEEEEESSE CS
  DNA_pol3_beta_2   2 lkqkelkelieqvafaasedetrpvLtGvrleieedklllaaTdghRlavrkleleeeeedeasvivPaktlaelaklledneeqvklalsegk 95 
                      ++ + l + ++qv+   +   t+p+L  + l++ +  l l+ Td     v+++ l + +e+  + +vPa+ + ++ + l + + +++++l+ ++
       CTQ26143.1   5 VEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALVQPHEA-GATTVPARKFFDICRGLPE-GAEIAVQLEGDR 96 
                      6778889999999999999*************************87767777777777764.899****************.99*******999 PP

                      EEEEETTEEEE.EE-BSS---B CS
  DNA_pol3_beta_2  96 irfevgnvrlt.srlldgkfPd 116
                      + ++ g  r+  s l  ++fP+
       CTQ26143.1  97 MLVRSGRSRFSlSTLPAADFPN 118
                      9999999988614555678886 PP

  == domain 2  score: 136.5 bits;  conditional E-value: 1e-43
                      EEEHHHHHHHHHCCGGGS-SSTTSGGGGEEEEEEECCEEEEEEE-SSEEEEEEEEEEECTTCEEEEEEEHHHHHHHHHHHTSSSSEEEEEEESS CS
  DNA_pol3_beta_2   1 elkqkelkelieqvafaasedetrpvLtGvrleieedklllaaTdghRlavrkleleeeeedeasvivPaktlaelaklledneeqvklalseg 94 
                      +l+q ++k+lie+++f+++++++r++L+G+ +e+e+++l+++aTdghRlav++++le++ + ++svivP+k++ el+++l+  +  ++++++++
       CTQ26143.1 129 TLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVCSMPLEASLP-NHSVIVPRKGVIELMRMLDGGDTPLRVQIGSN 221
                      589**********************************************************.5******************************* PP

                      EEEEEETTEEEEEE-BSS---B CS
  DNA_pol3_beta_2  95 kirfevgnvrltsrlldgkfPd 116
                      +ir++vg++++ts+l+dg+fPd
       CTQ26143.1 222 NIRAHVGDFIFTSKLVDGRFPD 243
                      *********************8 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.098
                      GEEEEEEECCEEEEEEE- CS
  DNA_pol3_beta_2  28 tGvrleieedklllaaTd 45 
                       Gvrl ++e++l ++a +
       CTQ26143.1 279 RGVRLYVSENQLKITANN 296
                      566666666666666544 PP

>> DNA_pol3_beta_3  DNA polymerase III beta subunit, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.76   3.4e+03      39      57 ..      35      53 ..      32      61 .. 0.76
   2 !  151.9   0.2   1.4e-48   6.5e-45       1     121 []     245     365 ..     245     365 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.76
                     EEEETTEEEEEEEETTSEE CS
  DNA_pol3_beta_3 39 Lsleegqlklsaensevge 57
                     L++ +g l l++++ e + 
       CTQ26143.1 35 LQVADGALSLTGTDLEMEM 53
                     7888888888888887764 PP

  == domain 2  score: 151.9 bits;  conditional E-value: 1.4e-48
                      CCCS-SS-SEEEEEEHHHHHHHHHHHHTTSSTSTGEEEEEEETTEEEEEEEETTSEEEEEEEEEBEESS-EEEEEEHHHHHHHHHHH-SSEEEE CS
  DNA_pol3_beta_3   1 krllPkefkkkvtvdlkelkealkRvalladeknrkvrLsleegqlklsaensevgeaeEevdvnyeGeeleiafNvsYlldalkaleteevel 94 
                      +r+lPk+ +k++++ +++lk+a++R+a+l++ek+r+vrL ++e+qlk++a+n+e++eaeE++dv+y G e+ei+fNvsY+ld+l+al++e+v++
       CTQ26143.1 245 RRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVAYAGTEMEIGFNVSYVLDVLNALKCENVRI 338
                      69******************************************************************************************** PP

                      EESSTTS-EEEEETTEESEEEEE--BB CS
  DNA_pol3_beta_3  95 qltdstkpvllsevedesvkyvilpmr 121
                       ltds+++v++++++++s++yv++pmr
       CTQ26143.1 339 LLTDSVSSVQIEDAASQSAAYVVMPMR 365
                      **************************7 PP

>> TubC_N  TubC N-terminal docking domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.12   5.3e+02      11      27 ..      86     102 ..      84     110 .. 0.82
   2 ?    8.9   0.0   0.00033       1.5       6      27 ..     274     295 ..     270     298 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.12
      TubC_N  11 lgIkLwleggrLrfrAp 27 
                 + I ++leg+r  +r+ 
  CTQ26143.1  86 AEIAVQLEGDRMLVRSG 102
                 5799*******998875 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00033
      TubC_N   6 aelealgIkLwleggrLrfrAp 27 
                 ++ + +g++L++ +++L++ A+
  CTQ26143.1 274 SNEKFRGVRLYVSENQLKITAN 295
                 555669*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2767.68
//
Query:       CTQ26144.1  [L=467]
Description: chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-99  330.6   0.2    7.3e-99  330.0   0.2    1.3  1  Bac_DnaA     Bacterial dnaA  protein
    4.5e-33  113.1   0.3    1.3e-32  111.6   0.1    1.9  2  Bac_DnaA_C   Bacterial dnaA protein helix-turn-helix
      1e-20   73.2   0.2    2.3e-20   72.1   0.2    1.7  1  DnaA_N       DnaA N-terminal domain
    7.9e-11   42.0   0.0    1.5e-10   41.1   0.0    1.4  1  IstB_IS21    IstB-like ATP binding protein
    2.9e-06   27.7   0.0    1.6e-05   25.3   0.0    2.1  2  AAA          ATPase family associated with various cellular a
    0.00082   18.4   0.0     0.0021   17.0   0.0    1.6  1  Kinesin      Kinesin motor domain
     0.0011   19.4   0.4     0.0055   17.1   0.2    2.4  2  AAA_16       AAA ATPase domain
     0.0014   18.6   0.1      0.021   14.9   0.0    2.2  2  AAA_14       AAA domain
     0.0059   16.9   2.9        0.9    9.8   1.2    3.3  2  AAA_22       AAA domain
  ------ inclusion threshold ------
      0.025   14.5   0.0      0.056   13.4   0.0    1.6  1  NACHT        NACHT domain
      0.033   13.1   0.2      0.093   11.6   0.2    1.7  1  AFG1_ATPase  AFG1-like ATPase
      0.041   13.8   0.1       0.13   12.1   0.1    1.9  1  ATPase_2     ATPase domain predominantly from Archaea
      0.088   13.2   0.8         12    6.3   0.0    2.8  3  DUF3037      Protein of unknown function (DUF3037)
       0.11   12.6   0.0       0.24   11.5   0.0    1.5  1  BLOC1S3      Biogenesis of lysosome-related organelles comple
       0.11   12.8   0.1        0.4   11.0   0.1    2.1  1  AAA_19       AAA domain


Domain annotation for each model (and alignments):
>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.0   0.2  6.1e-102   7.3e-99       2     218 ..     133     349 ..     132     350 .. 0.99

  Alignments for each domain:
  == domain 1  score: 330.0 bits;  conditional E-value: 6.1e-102
                 -SS-SGGG----TTTHHHHHHHHHHHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHTT-SE CS
    Bac_DnaA   2 nkrytFetFviGasnrlAlaaalkvaeapgkkynPlfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklrkvDv 100
                 n ++tF++Fv+G+sn+lA+aaa++va++pg +ynPlf+yg++GlGktHLl+a+gn +++++p+++vvY+++e+F++++vkal+++++eefk+ +r+vD+
  CTQ26144.1 133 NVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIVARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDA 231
                 679************************************************************************************************ PP

                 EEEE-GGGGTT-HHHHHHHHHHHHHHHTTT-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT----TTHHHHHHHH-- CS
    Bac_DnaA 101 LliDDiqflagkektqeelfhtfnalleegkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaeklevpeevlefiaervt 199
                 LliDDiqf+a+ke++qee+fhtfnalle ++q++l+sDr+Pke++ +edrl+srf +Gl+v+iepp+letr+ail+kk++++++ +p ev++fia+r++
  CTQ26144.1 232 LLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLR 330
                 *************************************************************************************************** PP

                 S-HHHHHHHHHHHHHHHHH CS
    Bac_DnaA 200 dnvRelegalnrlkayasl 218
                 +nvRelegalnr+ a a++
  CTQ26144.1 331 SNVRELEGALNRVIANANF 349
                 *************998765 PP

>> Bac_DnaA_C  Bacterial dnaA protein helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.9   8.2e+03      19      42 ..     306     329 ..     301     336 .. 0.75
   2 !  111.6   0.1   1.1e-35   1.3e-32       1      69 []     376     444 ..     376     444 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.9
                 HHS----CSSHHHHHHHHHHHHHT CS
  Bac_DnaA_C  19 lkskkRkkeiveaRqiamylarel 42 
                 l++k  +++i  +  +a ++a++l
  CTQ26144.1 306 LMKKADENDIRLPGEVAFFIAKRL 329
                 566667888888889999999877 PP

  == domain 2  score: 111.6 bits;  conditional E-value: 1.1e-35
                 ..HHHHTHHHHTT--HHHHHS----CSSHHHHHHHHHHHHHTS---HHHHHHHHT-STTHHHHHHHHHH CS
  Bac_DnaA_C   1 iekIieaVaeyfgvsvedlkskkRkkeiveaRqiamylareltdlslpeIGkefggrdHsTVihaikki 69 
                 i++I+++Vaey++++v+dl+sk+R+++++++Rq+am la+elt++slpeIG++fggrdH+TV+ha++ki
  CTQ26144.1 376 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 444
                 799*****************************************************************8 PP

>> DnaA_N  DnaA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.2   1.9e-23   2.3e-20       2      63 ..       4      64 ..       3      65 .. 0.94

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 1.9e-23
      DnaA_N  2 elWsavlerLkkelgeqsfdtWikplklfalknngltlivpneFardwiesnYldriaellk 63
                +lW+++l+rL++el++++f++Wi+pl++ +l++n+l l++pn+F+ dw++++Yl+ i+ ll+
  CTQ26144.1  4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLN 64
                69*************************6.587*************************99886 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.2e-13   1.5e-10      49     151 ..     167     272 ..     130     279 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.2e-13
   IstB_IS21  49 nivllGpsGvGKshlaialgveavr..aglsvlfvrvedLveelkrarrdgklaralkrllkvdllilDdlgllpldqaeaellfeviekrye.rrsii 144
                  + l G++G GK+hl  a+g   v+   + +v+++  e++v+ + +a +++ +++  + +  vd l++Dd+ +   ++ ++e++f+  ++  e ++ ii
  CTQ26144.1 167 PLFLYGGTGLGKTHLLHAVGNGIVArkPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEgNQQII 265
                 57899**************99877634799*************************9999999***************************9987367899 PP

   IstB_IS21 145 itsnlpf 151
                 +ts+   
  CTQ26144.1 266 LTSDRYP 272
                 9998765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.4e-08   1.6e-05       2     111 ..     169     270 ..     168     290 .. 0.78
   2 ?   -0.4   0.0       1.2   1.5e+03      24      52 ..     384     412 ..     350     461 .. 0.64

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.4e-08
                 EEESSTTSSHHHHHHHHHHHH.....THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel.....gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldg 95 
                  lyG  G GKT l +av + +     +++++ +   ++++++v++ +++  e fk+  ++     l+iD+i  +a+++     +++e+   ++ + l+g
  CTQ26144.1 169 FLYGGTGLGKTHLLHAVGNGIvarkpNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSV--DALLIDDIQFFANKE-----RSQEEFFHTFNALLEG 260
                 69******************877766799*******************9999999987664..99*********9999.....4555556666666665 PP

                 TTTSSSTEEEEEEESS CS
         AAA  96 vkkkeskvivigatnr 111
                  ++      +i+++ r
  CTQ26144.1 261 NQQ------IILTSDR 270
                 555......5666666 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.2
                 HEEEEEETTTCSSSSTTHHHHHHHHHHHH CS
         AAA  24 vefleisgsellskyvgesekkirelfke 52 
                 +e+++i++++llsk  + s ++ r++  +
  CTQ26144.1 384 AEYYKIKVADLLSKRRSRSVARPRQMAMA 412
                 55666666666666555555555555444 PP

>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.8e-06    0.0021      36     146 ..     129     398 ..     118     428 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.8e-06
                 CTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBCTTTSBSHHHHHHHHHHHHHHHCTTTH............. CS
     Kinesin  36 keeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegkeeeeeGiipraleelFesikkekeek............. 121
                 +++ + k++Fd++++ +++q        ++ v +   G    +f YG tg GKT+ ++      +Gi++r  +     +++e+  +             
  CTQ26144.1 129 RSNVNVKHTFDNFVEGKSNQLARAAA--RQ-VADNPGGAYNPLFLYGGTGLGKTHLLHAV---GNGIVARKPNAKVVYMHSERFVQdmvkalqnnaiee 221
                 56677889999999988776554433..45.555567777789**************987...345555543222222222222222344444456888 PP

                 ................................................................................................... CS
     Kinesin 122 ................................................................................................... 121
                                                                                                                    
  CTQ26144.1 222 fkryyrsvdalliddiqffankersqeeffhtfnallegnqqiiltsdrypkeingvedrlksrfgwgltvaieppeletrvailmkkadendirlpge 320
                 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                 .....................................................EEEEEEEEEEEEEETTEEEETTSTT CS
     Kinesin 122 .....................................................ekefsvkvsylEiYneeiyDLLesk 146
                                                                       +  +++ ++ E Y+ ++ DLL+++
  CTQ26144.1 321 vaffiakrlrsnvrelegalnrviananftgraitidfvrealrdllalqeklVTIDNIQKTVAEYYKIKVADLLSKR 398
                 999999999999999999999999955555555555555555555555554442223344445555555555555544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       8.8   1.1e+04      82     118 ..      10      45 ..       5      74 .. 0.63
   2 !   17.1   0.2   4.6e-06    0.0055      11     145 ..     148     380 ..     143     465 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.8
      AAA_16  82 lrqlldeaesaeleawrekleealaavpelagaeasr 118
                 l+ l de+ ++e++ w + l+++l+  + la  +++r
  CTQ26144.1  10 LARLQDELPATEFSMWIRPLQAELS-DNTLALYAPNR 45 
                 4555666666677777776666666.44444444444 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 4.6e-06
      AAA_16  11 qLlsalervrsgrp....elvllsGesGvGKsslvrellralekd....g.giflrgkcdqlesaipysalaqalareellrqllde............ 88 
                 qL++a  r  ++ p    + ++l+G  G GK+ l+ ++ + + ++    + ++  +++++q          ++al ++  +++ ++             
  CTQ26144.1 148 QLARAAARQVADNPggayNPLFLYGGTGLGKTHLLHAVGNGIVARkpnaKvVYMHSERFVQD--------MVKAL-QNNAIEEFKRYyrsvdalliddi 237
                 565666655555566779**********************8888877442133355555555........44444.32444444333333222232223 PP

      AAA_16  89 ....aesaeleawrekleeala........................................................................avpel 111
                      +++++e++ +++ + l+                                                                         v+el
  CTQ26144.1 238 qffaNKERSQEEFFHTFNALLEgnqqiiltsdrypkeingvedrlksrfgwgltvaieppeletrvailmkkadendirlpgevaffiakrlrsNVREL 336
                 333322223333333333333355556666666666666666666666666666666666666666666666666666666666666666666655555 PP

      AAA_16 112 agaea...........srllellkrll.allsrderplvlvlDdlq 145
                 +ga+                + ++++l +ll+ +e+  ++++D++q
  CTQ26144.1 337 EGALNrviananftgrAITIDFVREALrDLLALQEK--LVTIDNIQ 380
                 555555555555555544444444444444444333..56666666 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.8e-05     0.021       3      98 ..     166     267 ..     164     287 .. 0.69
   2 ?    1.4   0.0      0.26   3.1e+02      53      76 ..     359     382 ..     324     419 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.8e-05
      AAA_14   3 kilvitGaRrvGKTtllkqlikell..vkkesilyinldderdkkla.dpekllelileklkeekktylflDEiqev.......pewekalkslvdegk 91 
                 ++l++ G    GKT ll+ + +      ++ +++y+  ++  +++ +  +++ +e++++  ++     l++D iq         +e++++ + l++   
  CTQ26144.1 166 NPLFLYGGTGLGKTHLLHAVGNGIVarKPNAKVVYMHSERFVQDMVKaLQNNAIEEFKRY-YR-SVDALLIDDIQFFankersqEEFFHTFNALLEG-- 260
                 5788999999*******9999777788889999999988866655441333455666664.44.6788*********55555555555555555442.. PP

      AAA_14  92 nldvivt 98 
                 n ++i+t
  CTQ26144.1 261 NQQIILT 267
                 2355555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.26
      AAA_14  53 lelileklkeekktylflDEiqev 76 
                  ++ l+ l + +++++ +D iq+ 
  CTQ26144.1 359 VREALRDLLALQEKLVTIDNIQKT 382
                 2222222223578999*****986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   1.2   0.00075       0.9       8     105 ..     168     243 ..     164     269 .. 0.51
   2 ?    1.6   0.0      0.26   3.2e+02      79     103 ..     360     383 ..     318     414 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00075
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr.s 105
                 l+++G +G GKT+ll  + +  +++      +p    v++ s+     + +++++al++++          +e + ++ r+     +l+iD++q++  +
  CTQ26144.1 168 LFLYGGTGLGKTHLLHAVGNGIVAR------KPNAKVVYMHSE----RFVQDMVKALQNNA----------IEEFKRYYRSV---DALLIDDIQFFAnK 243
                 6789999999999999999998764......333333333333....35555555555322..........22233333222...33555555555441 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.26
      AAA_22  79 lealeqalraravielliiDEaqh.l 103
                 +eal++ l  +   +l+ iD++q+ +
  CTQ26144.1 360 REALRDLLALQE--KLVTIDNIQKtV 383
                 234444444443..6*******9844 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.7e-05     0.056       2      62 ..     167     237 ..     166     273 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.7e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-................-HCHHHCCCC CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgna.............rsladllfsql 62 
                 +++l G  G GKT+Ll+ +   + ++k+++   k+v+++s r +++  +a             rs++ ll ++ 
  CTQ26144.1 167 PLFLYGGTGLGKTHLLHAVGNGIVARKPNA---KVVYMHSERFVQDMVKAlqnnaieefkryyRSVDALLIDDI 237
                 5799***********************988...78988888877776666555556666666666666666655 PP

>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   7.8e-05     0.093      59     111 ..     162     218 ..     132     283 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.8e-05
  AFG1_ATPase  59 vepvrglYlwGgvGrGKtylmdlf....feslpvekkrrvhfhafmarvhdeltklr 111
                    + + l+l+Gg G GKt+l+           p +k   +h  +f++++ + l++ +
   CTQ26144.1 162 GGAYNPLFLYGGTGLGKTHLLHAVgngiVARKPNAKVVYMHSERFVQDMVKALQNNA 218
                  4566789**************875111155567777777788888777777766654 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00011      0.13      18      62 ..     163     207 ..     160     284 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
    ATPase_2  18 epneiyfiYGpegsGKtaLlkeiienl..edkdkyviyyialreesi 62 
                 + ++++f+YG  g GKt Ll  + +    ++ + +v+y+ + r  + 
  CTQ26144.1 163 GAYNPLFLYGGTGLGKTHLLHAVGNGIvaRKPNAKVVYMHSER--FV 207
                 5689****************99877654345566777776533..33 PP

>> DUF3037  Protein of unknown function (DUF3037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0      0.01        12      19      90 ..     188     259 ..     185     282 .. 0.85
   2 ?    4.4   0.0     0.039        47      51     115 ..     331     396 ..     299     398 .. 0.79
   3 ?   -2.6   0.0       6.2   7.4e+03      76      93 ..     445     462 ..     399     466 .. 0.50

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.01
     DUF3037  19 GVvlfskkegflkvrlelde.aRlralfpeldlealeeelkaleeicegekaagpiakldlaerfrwltaprs 90 
                 G+v+ +++++ + ++ e+   + ++al +++ +e+++++ +++++ + ++ ++ ++++++++e+f++++a  +
  CTQ26144.1 188 GIVARKPNAKVVYMHSERFVqDMVKALQNNA-IEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLE 259
                 99*************9999747777777655.***************99999888888888888888877554 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.039
     DUF3037  51 ealeeelkaleeicegeka.agpiakldlaerfrwltaprstviqtsevhtgltedpeaelerLfe 115
                   ++e   al++++++++  + +i  + ++e +r l a ++ ++ + +++ +++e  + ++++L++
  CTQ26144.1 331 SNVRELEGALNRVIANANFtGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLS 396
                 4566666677777777777455666699***********************999998888888875 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 6.2
     DUF3037  76 ldlaerfrwltaprstvi 93 
                 ++l+e  + ++++ s++i
  CTQ26144.1 445 EQLREESHDIKEDFSNLI 462
                 334444444444444444 PP

>> BLOC1S3  Biogenesis of lysosome-related organelles complex 1 subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0002      0.24      93     162 ..     305     376 ..     292     384 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
     BLOC1S3  93 LLhqKLrEsNarLrkdvkeavsqvysaaskelesv.tsqLnksqsaiqnashs.irlilddlkavsekldii 162
                  L +K +E ++rL  +v  ++ +  +++ +ele + ++ ++++  +   ++   +r +l+dl a++ekl  i
  CTQ26144.1 305 ILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGAlNRVIANANFTGRAITIDfVREALRDLLALQEKLVTI 376
                 6889****************************97626667788888888886549*************9877 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00034       0.4      11      64 ..     166     216 ..     156     397 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00034
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaa 64 
                 ++l++ +G G GKT++l+++ + +v+++   p+  ++    +r ++ + ++l++
  CTQ26144.1 166 NPLFLYGGTGLGKTHLLHAVGNGIVARK---PNAKVVYMHSERFVQDMVKALQN 216
                 6899*************99999999888...45555556667777777766633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 3257.66
//
Query:       CTQ26145.1  [L=46]
Description: 50S ribosomal protein L34 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-24   85.4   9.8      2e-24   85.3   9.8    1.0  1  Ribosomal_L34  Ribosomal protein L34


Domain annotation for each model (and alignments):
>> Ribosomal_L34  Ribosomal protein L34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   9.8   1.1e-28     2e-24       1      44 []       1      44 [.       1      44 [. 0.99

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 1.1e-28
                   ---S----HHHHHCSSSHHHHHHSHHHHHHHHHHHTTSSS-SCC CS
  Ribosomal_L34  1 mkrtyqPskrkRkrkhGFraRmstknGrkvLkrRraKGRkrLsv 44
                   mkrt+qPs +kR+r hGFraRm+tknGr+vL+rRraKGR+rL+v
     CTQ26145.1  1 MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV 44
                   9*****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 357.35
//
Query:       CTQ26146.1  [L=108]
Description: protein C5 component of RNase P [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-30  103.8   0.1    5.6e-30  103.7   0.1    1.0  1  Ribonuclease_P  Ribonuclease P


Domain annotation for each model (and alignments):
>> Ribonuclease_P  Ribonuclease P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   0.1   3.1e-34   5.6e-30       9     108 ..       3     100 ..       1     102 [. 0.97

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 3.1e-34
  Ribonuclease_P   9 kraeFqavfregkrvaskdlvlyalknsleksslrlGlsvskkvgk.AvvRNrikRllReafrlnkdelpagldlvviakkgaaeadfaelekel 102
                     ++++F++vf++ +r+++ +++++ + nsl+++  r+Gl+v+kk++k A++RNrikRl Re+frl+++elp  +d+vv+ak+g+a++d+  l + l
      CTQ26146.1   3 TPSHFTFVFQQPQRAGTPQITILGRLNSLGHP--RIGLTVAKKNVKrAHERNRIKRLTRESFRLRQHELP-PMDFVVVAKRGVADLDNRALSEAL 94 
                     789****************************9..************************************.************************ PP

  Ribonuclease_P 103 ekllkk 108
                     ekl+++
      CTQ26146.1  95 EKLWRR 100
                     ****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 808.15
//
Query:       CTQ26147.1  [L=548]
Description: cytoplasmic insertase into membrane protein, Sec system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-86  290.8   2.9    2.1e-86  290.3   2.9    1.2  1  YidC_periplas  YidC periplasmic domain
    2.4e-60  203.2  14.7    4.1e-60  202.5  14.7    1.4  1  60KD_IMP       60Kd inner membrane protein


Domain annotation for each model (and alignments):
>> YidC_periplas  YidC periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.3   2.9   2.3e-90   2.1e-86       2     283 .]      60     343 ..      59     343 .. 0.92

  Alignments for each domain:
  == domain 1  score: 290.3 bits;  conditional E-value: 2.3e-90
                    EEEE-SS-EEEEETBTTEEEEEEEEEEESSTT-SS.EEEECEEETTEEEEEEEEEESTT-.TTSGG..S--B-B-S-SEEE--TT-SEEEEEEEEE CS
  YidC_periplas   2 itvdtdvlegsislkGgriddleLkkYketldkdskpveLlspegaetyvaqsglvgagggkaldp..rktvftaeegeyelaeltdelpvtLtwd 95 
                    itv+tdvle++i+++Gg+i+++ L+ Y++tl++++ p++Ll+++++  y aqsgl+g + g+++++  ++ +++++++++ la+++del+++Lt++
     CTQ26147.1  60 ITVKTDVLELTINTNGGDIEQALLLAYPKTLKSTE-PFQLLETTPQFVYQAQSGLTGRD-GPDNPAngPRPLYNVDKEAFVLADGQDELVIPLTYT 153
                    8*********************************9.********************866.566666677888************************ PP

                    -TTS-EEEEEEEEETT-SEEEEEEEEE--SSS-EEEEEEEEEEEE...--.------.----.--EEEEEEETTTCCEEEEHHHHHT..T---EEE CS
  YidC_periplas  96 ngnGltftktytldrdsYlitvtdeveNtsgapvtlapygqlkrd...peeaseees.mfai.tyegaagvtdeeklqkvkfkdlekdkkakkekk 186
                    +++G +ftkt+tl+r+ Y+++v ++v+N s++p++++ +gqlk++   p+++++++   +++ t++gaa++t + k++k+kf+++ +++++++  +
     CTQ26147.1 154 DKAGNVFTKTFTLKRGGYAVNVGYSVQNASEKPLEVSTFGQLKQTaalPTSRDTQTGgLSTMhTFRGAAFSTADSKYEKYKFDTILDNENLNV--S 247
                    *********************************************997665553434555666**********************99766665..5 PP

                    EES-EEEEEETTEEEEEEEE.SSSEEEEEEEEEE.TEEEEEEEE.--EEE-TT-EEEEEEEEEEEE--HHHHHHH.TTGGGHHHHHHHHHHTSHHH CS
  YidC_periplas 187 tgggWvamtqkYFlsAlipdqdaetnefyarkkkkdlyqagylsapavtvapgasasvtarlfaGPkevktlkai.pgLdlavDyGwltfitkplf 281
                    t++gWvam+q+YF++A++p +++ tn+fy+   +++++++gy+s ++v v+pg++ +++++l++GP ++++++a+ p+Ldl+vDyGwl+fi++plf
     CTQ26147.1 248 TKNGWVAMLQQYFTTAWVPRNNG-TNNFYTANLGNGVVAIGYKS-QPVLVQPGQTDKLQSTLWVGPAIQDKMAAVaPHLDLTVDYGWLWFISQPLF 341
                    8999***************9666.999***999989*******6.*****************************99******************** PP

                    HH CS
  YidC_periplas 282 wl 283
                    +l
     CTQ26147.1 342 KL 343
                    86 PP

>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.5  14.7   4.6e-64   4.1e-60       1     166 []     354     533 ..     354     533 .. 0.92

  Alignments for each domain:
  == domain 1  score: 202.5 bits;  conditional E-value: 4.6e-64
    60KD_IMP   1 yglaIilltiivrlillpltlkqlkssakmqelqPelkeiqekykkdkqklqqemmklYkkegvnplaGclplLiqlpifialyrvlrsla.....sf. 93 
                 +g++Ii++t+ivr i++plt+ q++s+akm+ lqP++++++e+  +dkq+++qemm+lYk e+vnpl+Gc+pl+iq+pif+aly++l+         f 
  CTQ26147.1 354 WGFSIIVITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQAMRERLGDDKQRQSQEMMALYKAEKVNPLGGCFPLIIQMPIFLALYYMLSASVelrhaPFi 452
                 9****************************************************************************************6666554228 PP

    60KD_IMP  94 .wikdLsapd....lpillavttflqqklsksk...km.qkmmlyvmplmilffslsfpaglvlYwlvsnllsiaqqliink 166
                  wi+dLsa+d    lpi++++t+f+ qk+s+++    m qk+m ++mp+++++f+l fp+glv+Y++vsnl++i+qq +i++
  CTQ26147.1 453 lWIHDLSAQDpyyiLPIIMGATMFFIQKMSPTTvtdPMqQKIM-TFMPVIFTVFFLWFPSGLVVYYIVSNLVTIIQQQLIYR 533
                 8*******9999******************6633443336777.9********************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4168.24
//
Query:       CTQ26148.1  [L=454]
Description: GTPase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-61  206.4   1.5    6.2e-61  206.2   1.5    1.1  1  MnmE_helical  MnmE helical domain
    4.9e-35  120.3   0.0    1.7e-34  118.6   0.0    2.0  2  TrmE_N        GTP-binding protein TrmE N-terminus
    3.6e-25   88.3   0.0    2.4e-24   85.6   0.0    2.0  2  MMR_HSR1      50S ribosome-binding GTPase
    1.3e-07   31.3   0.0    3.8e-07   29.8   0.0    1.7  2  FeoB_N        Ferrous iron transport protein B
    3.2e-05   24.1   0.0    0.00068   19.7   0.0    2.3  2  Dynamin_N     Dynamin family
    0.00018   21.2   0.0    0.00031   20.4   0.0    1.4  1  Ras           Ras family
    0.00023   20.6   0.0    0.00051   19.4   0.0    1.6  2  AIG1          AIG1 family
    0.00031   20.7   0.0     0.0094   15.9   0.0    2.4  2  RsgA_GTPase   RsgA GTPase
     0.0012   19.1   0.0      0.003   17.8   0.0    1.7  1  Roc           Ras of Complex, Roc, domain of DAPkinase
     0.0012   19.3   0.0     0.0025   18.3   0.0    1.5  1  ABC_tran      ABC transporter
     0.0058   16.9   0.0      0.014   15.6   0.0    1.7  1  AAA_28        AAA domain
  ------ inclusion threshold ------
      0.012   15.1   0.0      0.027   13.9   0.0    1.6  1  Arf           ADP-ribosylation factor family
       0.04   13.4   0.0      0.075   12.5   0.0    1.5  1  SRPRB         Signal recognition particle receptor beta subun
      0.079   12.5   0.0        3.2    7.2   0.0    2.4  1  GTP_EFTU      Elongation factor Tu GTP binding domain
       0.13   11.6   0.0       0.28   10.5   0.0    1.5  2  Gtr1_RagA     Gtr1/RagA G protein conserved region


Domain annotation for each model (and alignments):
>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.2   1.5   5.2e-64   6.2e-61       1     206 []     123     451 ..     123     451 .. 0.96

  Alignments for each domain:
  == domain 1  score: 206.2 bits;  conditional E-value: 5.2e-64
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  MnmE_helical   1 LtqaEavadlIdAeteaaakaalrqleGelskkikelrekllellaeleaaiDFpeedleelseeelaekleelkeelekllatakrgellreGik. 96 
                   L+qaEa+adlIdA++e+aa++al++l+G++s ++++l e l++l+ ++eaaiDFp+e++++ls+ +++++l+e+ ++l+++ a+a++g+llreG+k 
    CTQ26148.1 123 LAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAIDFPDEEIDFLSDGKIEAQLNEVMADLDAVRAEARQGSLLREGMKv 219
                   89*********************************************************************************************** PP

                   ................................................................................................. RF
  MnmE_helical  97 ................................................................................................. 96 
                                                                                                                    
    CTQ26148.1 220 viagrpnagkssllnalagreaaivtdiagttrdvlrehihidgmplhiidtaglrdandeverigierawqeiaqadrvlfmvdgtttsavdpaei 316
                   ********************************************************************************************99999 PP

                   .....................xxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical  97 .....................Dllkeke...ekeeeevlkiSaktgegieeLeeaike.leleeieeeplltnaRhkealekalealeeakealeag 168
                                        D++ e+    e + ++ +++Sa+tg+g+e L++++k+ + +++  e+ +l+++Rh++ale+a+++l++ k +l  +
    CTQ26148.1 317 wpdfierlpaklpitvvrnkaDVTGEALgisEVNGHSLIRLSARTGDGVEVLRNHLKQsMGFDTNMEGGFLARRRHLQALEEAANHLQQGKAQLLGA 413
                   999999999999998888888766665588888999999*******************5556444667***************************** PP

                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical 169 lpldlvaedLrealeaLgeItGevvtedlLdeIFskFC 206
                   ++ +l+ae+Lr a++aL+eItGe++++dlL++IFs+FC
    CTQ26148.1 414 WAGELLAEELRLAQQALSEITGEFTSDDLLGRIFSSFC 451
                   99************************************ PP

>> TrmE_N  GTP-binding protein TrmE N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.0   1.4e-37   1.7e-34       1     115 []       6     120 ..       6     120 .. 0.96
   2 ?   -1.9   0.0       3.3     4e+03      83      83 ..     408     408 ..     345     440 .. 0.52

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 1.4e-37
                 -EEEE-S-SSS-SEEEEEEESTTHHHHHHTTEEET--CTEEEEEEEECT..TCEEEEEEEEEEBTTCSTTSSEEEEEEEESSHHHHHHHHHHHHCT.T- CS
      TrmE_N   1 TIaAlatpagkgaiaiiRvsGpkaleiakklfkkelkprkallgklvdeeekevlDevlvlvfkaprsyTgedvvElhlhGgpavvkavleallka.ga 98 
                 TI+A atp+g+g+++i+R+sG ka ++a++++ k +kpr+a +  + d  +++ lD++++l+f++p+s+Tgedv+El+ hGgp++++ +l+++l+  g+
  CTQ26148.1   6 TIVAQATPPGRGGVGILRISGLKARDVAQAVLGKLPKPRYADYLPFNDV-DGTPLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLpGL 103
                 9*********************************************876.7788*************************************9987657* PP

                 EE--CTHHHHHHHHTTS CS
      TrmE_N  99 rlAepGEFtkRaflngk 115
                 r+A+pGEF++Rafln+k
  CTQ26148.1 104 RIARPGEFSERAFLNDK 120
                 ***************98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.3
                 H CS
      TrmE_N  83 p 83 
                  
  CTQ26148.1 408 A 408
                 1 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.75     9e+02      59      95 ..     109     143 ..      95     165 .. 0.64
   2 !   85.6   0.0     2e-27   2.4e-24       1     114 []     218     336 ..     218     336 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.75
                 HHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHH CS
    MMR_HSR1  59 gaseekglgkaflaleeadlillvvdaseeklkplde 95 
                 g+ +e+ + ++ l+l +a++i+ ++das+e  ++ ++
  CTQ26148.1 109 GEFSERAFLNDKLDLAQAEAIADLIDASSE--QAARS 143
                 33445556666677888999******9855..22333 PP

  == domain 2  score: 85.6 bits;  conditional E-value: 2e-27
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS.HHHHHH.HHHHHHHHHHCTSEEEEEEETT.TTCSHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGlie.gaseek.glgkaflaleeadlillvvdas.eeklkplde 95 
                 +v+i+GrpN+GKS+L+nal g+ +aiv+d++gtTrd+ +++++++g +++++Dt+Gl + +++ e+ g+++a++++ +ad +l++vd + ++ ++p  e
  CTQ26148.1 218 KVVIAGRPNAGKSSLLNALAGReAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDaNDEVERiGIERAWQEIAQADRVLFMVDGTtTSAVDPA-E 315
                 699******************9679*******************************54353444446********************5542234333.3 PP

                 HHHHHHHH..TTSEEEEEEES CS
    MMR_HSR1  96 eleellee..akkplilvlnk 114
                    +++e+  ak p+++v nk
  CTQ26148.1 316 IWPDFIERlpAKLPITVVRNK 336
                 333333335567777777776 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   3.2e-10   3.8e-07       2      89 ..     218     306 ..     217     311 .. 0.84
   2 ?   -2.0   0.0       1.9   2.3e+03     130     154 ..     346     370 ..     324     372 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 3.2e-10
                 EEEEEESTTSSHHHHHHHHHTTSEE.EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGG CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqk.vgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdat 89 
                 +v+++G pn+Gk++l+nal+g +   v   +G+t +  + +++++g  ++i+D  G  + ++  e   + r      ++d v+ +vd t
  CTQ26148.1 218 KVVIAGRPNAGKSSLLNALAGREAAiVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIGIERAWQEIAQADRVLFMVDGT 306
                 799******************9865289****************************988777766666666666666777777777765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.9
                 HHHHHTS-EEEEBTTTTBTHHHHHH CS
      FeoB_N 130 LsekLgvpvvktsakkkegieellk 154
                 +se  g   +++sa++++g+e l++
  CTQ26148.1 346 ISEVNGHSLIRLSARTGDGVEVLRN 370
                 4566678889999999999998876 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   5.7e-07   0.00068       1      34 [.     219     253 ..     219     260 .. 0.82
   2 ?    1.9   0.0      0.17     2e+02     102     139 ..     265     306 ..     257     315 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.7e-07
                 EEEEEBTTTTHHHHHHHHHTS--S---SS.S---S CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpn.ptTrr 34 
                 +++ G  ++GKSS+lnaL g++   +  +  tTr 
  CTQ26148.1 219 VVIAGRPNAGKSSLLNALAGREAAIVTDIaGTTRD 253
                 7899*****************99886665256665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.17
                 SEEEEE---B-SSSGTTS....HHHHHHHSTTEEEEEEEETT CS
   Dynamin_N 102 gltlvDlPGldsvnkrdq....elvkeyikkadiilavtsan 139
                  l ++D+ Gl + n++ +    e + + i +ad +l++++  
  CTQ26148.1 265 PLHIIDTAGLRDANDEVErigiERAWQEIAQADRVLFMVDGT 306
                 588*********999988899988888888899999888765 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.6e-07   0.00031       1     118 [.     218     341 ..     218     376 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.6e-07
                 EEEEEESTTSSHHHHHHHHH..HSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETT....SGGGHHHHH....HHHTTESEEEEEEETTBHHHHHT CS
         Ras   1 KlvlvGdsavGKtslllrfv..kdkFkeeyesTigvdfytkeievdgkevkleiwDTAG....qeefkslre....lyyrdaegillvyditsresfen 89 
                 K+v+ G  + GK+sll+  +  +    ++   T   d ++++i++dg  + l+i DTAG     +e +++      + + +a+ +l + d t +++ + 
  CTQ26148.1 218 KVVIAGRPNAGKSSLLNALAgrEAAIVTDIAGTT-RDVLREHIHIDG--MPLHIIDTAGlrdaNDEVERIGIerawQEIAQADRVLFMVDGTTTSAVDP 313
                 89***************99832455778888888.999999999998..5689******6544466666543111245667777888888888888899 PP

                 HHHHHHHHHHHSTTTSEEEEEEETTTGGG CS
         Ras  90 vkkwveeikrvaeenvpivLvGnKvDlee 118
                 ++ w + i+r    ++pi +v nK+D++ 
  CTQ26148.1 314 AEIWPDFIERLPA-KLPITVVRNKADVTG 341
                 9999888888777.6***********986 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.5   5.3e+03     169     189 ..     188     208 ..     185     212 .. 0.80
   2 !   19.4   0.0   4.3e-07   0.00051       2      70 ..     218     285 ..     217     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.5
                 HHHHHHHHHHHHHHHHHHHTT CS
        AIG1 169 ekeeQvkellelveaivkeng 189
                 + e+Q++e+++  +a++ e+ 
  CTQ26148.1 188 KIEAQLNEVMADLDAVRAEAR 208
                 668999999999999998765 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 4.3e-07
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHH CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkis 70 
                 ++v+ G+  +GkS+  N++ g++a       ++ t+ + +++   dg  +++iDT gl d +++ ++i 
  CTQ26148.1 218 KVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHIDGMPLHIIDTAGLRDANDEVERIG 285
                 699*******************996665.57999**************************999988775 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.8e-06    0.0094      99     162 ..     215     275 ..     183     279 .. 0.74
   2 ?    2.3   0.0      0.12   1.4e+02      44     100 ..     325     375 ..     287     378 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.8e-06
                  T.SEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEE...EESS-SSS CS
  RsgA_GTPase  99 d.ktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaeggl...liDtPGfr 162
                  +   +v++G   +GKS+L+nal++++ + + ++         TT+ v   +++ +g+   +iDt G+r
   CTQ26148.1 215 EgMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG-------TTRDVLREHIHIDGMplhIIDTAGLR 275
                  4366899******************9999999987.......55554444443333222367777766 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.12
                  HTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTS CS
  RsgA_GTPase  44 ekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkdk 100
                   +++++++v nK+D++ e+          e  g +++ +sa+t++g+e l+++lk++
   CTQ26148.1 325 PAKLPITVVRNKADVTGEAL------GISEVNGHSLIRLSARTGDGVEVLRNHLKQS 375
                  56778888888888888777......445556788999999*********9999986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.5e-06     0.003       1     119 [.     218     338 ..     218     339 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.5e-06
                 EEEEESSTTSSHHHHHHCHCT-CCC-E.EETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTT......T-HHHH..CTSCEEEEEEEGH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsek.ekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrs......lhplyl..reaalailvydsr 90 
                 Kvv+ G  ++GK+sll+ +  ++       + +  d+l++++          +++ + l+i DtaG  + +       +++ +    +a+ +++++d +
  CTQ26148.1 218 KVVIAGRPNAGKSSLLNALAGREAAIVtDIAGTTRDVLREHI----------HIDGMPLHIIDTAGLRDANDeverigIERAWQeiAQADRVLFMVDGT 306
                 9*******************7776432022223333333332..........344578********765553211122334443224666777888855 PP

                 HH...HCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  91 ss...enlkeWlkelkkvagkspvilvgnkiD 119
                 +    + ++ W + +++   k p+ +v nk+D
  CTQ26148.1 307 TTsavDPAEIWPDFIERLPAKLPITVVRNKAD 338
                 5511245578********************99 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.1e-06    0.0025       8      43 ..     213     260 ..     211     338 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.1e-06
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE............E CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............x RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkpteGei............l 43 
                 l+eg kv+i G+  aGKS+Ll++lag +     +i            +
  CTQ26148.1 213 LREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIagttrdvlrehiH 260
                 67999*********************9998666663333333333333 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-05     0.014       1      79 [.     218     304 ..     218     323 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
      AAA_28   1 kivitGgestGKTtlleaLaargypvv...pEaareileeklakgedalpwv..edllafaervle...eqleeeaaaaankvlfcD 79 
                 k+vi G + +GK++ll+aLa r+  +v   + + r++l+e+   ++  l+    + l + +++v++   e++ +e a+a++ ++++D
  CTQ26148.1 218 KVVIAGRPNAGKSSLLNALAGREAAIVtdiAGTTRDVLREHIHIDGMPLHIIdtAGLRDANDEVERigiERAWQEIAQADRVLFMVD 304
                 79******************9977766333666688888888777766664422333333333333000233333333555555566 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.3e-05     0.027      12     129 ..     214     341 ..     206     376 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEE....CSSSSSEEEEEEEETTEEEEEEEE-SSGG.........GGGGGGGGCTTESEEEEEEETT-CTTH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvt....tvPTigfnveeleiknlkftvwDvGGqek.........lRplWknYfektdavifvvDsadreRl 97 
                 +  +++++ G  naGK+ +l+ l   e +        T     e+++i ++ +++ D  G +          + + W++  ++ d v+f+vD + ++ +
  CTQ26148.1 214 REGMKVVIAGRPNAGKSSLLNALAGREAAIvtdiAGTTRDVLREHIHIDGMPLHIIDTAGLRDandeverigIERAWQE-IAQADRVLFMVDGTTTSAV 311
                 5679*******************9988766223222344556789999**********996642222222225678987.5678999999999999888 PP

                 HHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTT CS
         Arf  98 eeakeeLkalleeeelkevallvlaNKqDlpe 129
                 + a+  +   + e+  ++ ++ v+ NK D+++
  CTQ26148.1 312 DPAE--IWPDFIERLPAKLPITVVRNKADVTG 341
                 7664..33333445566788888888888765 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.3e-05     0.075       5      98 ..     218     316 ..     214     341 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.3e-05
                 EEEEE-STTSSHHHHHHHHHHS.S---B---S.S-EEETTG...GGTT-SEEEETT....-GCC.SHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHH CS
       SRPRB   5 avllvGlsdsGKTslftrLttd.svkktvtSq.essaalkvksekgskltliDfPG....hekl.rqklleklkaksslkglvfvvDStidpkevkevA 96 
                 +v+++G  ++GK sl++ L    ++  t ++     +  +    +g  l++iD  G    ++++ r  +    ++ +++ +++f+vD t  +  + + A
  CTQ26148.1 218 KVVIAGRPNAGKSSLLNALAGReAAIVTDIAGtTRDVLREHIHIDGMPLHIIDTAGlrdaNDEVeRIGIERAWQEIAQADRVLFMVDGTTTS--AVDPA 314
                 799****************976333444444424444444458899*********9444323332445556667778899*******88653..45555 PP

                 HH CS
       SRPRB  97 El 98 
                 E 
  CTQ26148.1 315 EI 316
                 55 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0027       3.2      67     137 ..     261     342 ..     214     405 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0027
                 CSSEEEEEEEESSSGGGHHHHHHH........HHT-SEEEEEEETTTBSTHHHHHHHHHHHHT...TTEEEEEEESCGSTHH CS
    GTP_EFTU  67 tkkylinliDtPGHvdFskevirg........lrvlDgavlvvdaveGvepqteevlrlalke...gvpiivfiNKmDrlka 137
                  +   +++iDt G +d ++ev+r         ++++D ++++vd +    +   e++   +++   ++pi v+ NK+D +++
  CTQ26148.1 261 IDGMPLHIIDTAGLRDANDEVERIgierawqeIAQADRVLFMVDGTTTSAVDPAEIWPDFIERlpaKLPITVVRNKADVTGE 342
                 5566678888888888888888765666677778888888888888887777777776554422225557777788887744 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.5     3e+03     185     205 ..     144     164 ..     118     174 .. 0.51
   2 ?   10.5   0.0   0.00023      0.28       1      91 [.     218     310 ..     218     343 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.5
   Gtr1_RagA 185 lLkklaeaieaeevlLferst 205
                  L++l  a +a+   L e  t
  CTQ26148.1 144 ALNSLQGAFSARVNHLVEALT 164
                 334444444443333333333 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00023
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvg...vliyVfDvesrel 91 
                 kv++ G+ ++GK+s+ + +     a  t   g+t dv +++++  + + l+++D  G ++  +e  +   e+  ++++    +++++D ++++ 
  CTQ26148.1 218 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH-IDGMPLHIIDTAGLRDANDEVERIGIERAWQEIAqadRVLFMVDGTTTSA 310
                 79999**************999999999999***********6.7889************9999777777777776654446777778776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 3679.08
//
Query:       CTQ26149.1  [L=139]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-10   40.1   0.0    4.4e-10   39.8   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.7e-09   37.9   0.0    2.3e-09   37.5   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    2.8e-06   27.3   0.0    3.9e-06   26.8   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0014   18.7   0.0     0.0021   18.2   0.0    1.2  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.028   14.4   0.0    1.5  1  FR47             FR47-like protein
      0.061   13.4   0.0      0.094   12.9   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   1.5e-13   4.4e-10      31     117 .]      39     120 ..      12     120 .. 0.78

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 1.5e-13
                     TTCEEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  31 eaegllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     +++++ v +++ +++i++ ++  +      +  i ++aV+p+++gkGlG++ +e+l+ ++  + ++  +++  +d     +lY k+GF
      CTQ26149.1  39 PHSCYGVhILWQETPIAMGRIVGDGA---INFDIVDVAVDPAHQGKGLGRLVMEKLVAWLDANAFDGAYVTLVADV---PELYAKFGF 120
                     44444444999999999997777777...777899****************************7755555443444...689999999 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   7.7e-13   2.3e-09      12      75 ..      57     121 ..      39     122 .. 0.65

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 7.7e-13
                     TEEEEEEEEEEESTCTEEEEE-GGGTTSSHHHHHHHH.......TT.SEEEEEEEEE.THHHHHHHHHHTTEE CS
  Acetyltransf_7  12 gkivGfialslldaeitrlaVdpeyrgkGiGraLlea.......ae.kgiileqlel.naekaikfYeklGFe 75 
                     g+ivG  a+     +i  +aVdp+++gkG+Gr  +e        ++  g    +++l ++    ++Y+k+GFe
      CTQ26149.1  57 GRIVGDGAINF---DIVDVAVDPAHQGKGLGRLVMEKlvawldaNAfDGA---YVTLvAD--VPELYAKFGFE 121
                     66777555444...5788*****************954555543114442...3345233..344*******8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.3e-09   3.9e-06      41     114 ..      52     128 ..      40     131 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.3e-09
  Acetyltransf_10  41 kivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYeklGFkavgeeqe 114
                      +++ ++++  dg     i  ++Vdp+++g+G+g+  +e++ + ++ +      +t+ a+    ++Y k+GF+ v +e e
       CTQ26149.1  52 TPIAMGRIvGDGAinfDIVDVAVDPAHQGKGLGRLVMEKLVAWLDANAFDGaYVTLVAD--VPELYAKFGFESVRPESE 128
                      55666666555556668999***********************9888777566666666..5689*********99876 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.9e-07    0.0021      76     127 ..      69     122 ..      65     123 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.9e-07
                     EEEEEE-CCGTTS-HHHHHHHHHHHHHHHT..T--EEEE--SSHHHHHTTT-EE CS
  Acetyltransf_9  76 vtgVavapehrgrgvlskLlaraleemree..gqplsllfPssipiYrrfGyei 127
                     +++Vav+p h+g+g+ +  ++++++ ++++  +   ++l++  +++Y +fG+e 
      CTQ26149.1  69 IVDVAVDPAHQGKGLGRLVMEKLVAWLDANafDGAYVTLVADVPELYAKFGFES 122
                     89*************77777777776666655689999***99*********95 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   9.5e-06     0.028      25      79 ..      70     122 ..      67     128 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.5e-06
                 EEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  25 galqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfek 79 
                   + v+p h+++Glg+++ ++l + + ++  +   v+  ++ p  +ly k Gfe 
  CTQ26149.1  70 VDVAVDPAHQGKGLGRLVMEKLVAWLDANAFDGAYVTLVADVP--ELYAKFGFES 122
                 5689******************999988655555555555555..7888888876 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.2e-05     0.094      24      56 ..      66      98 ..      50     101 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.2e-05
  Acetyltransf_CG 24 vldfthTeVpeelrGkGiAkkLvkaalddaree 56
                      +d+  + V+++++GkG+++  +++ + +  ++
       CTQ26149.1 66 NFDIVDVAVDPAHQGKGLGRLVMEKLVAWLDAN 98
                     57889999****************999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       160  (0.00892409); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1090.20
//
Query:       CTQ26150.1  [L=392]
Description: multidrug efflux system protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-45  154.0  38.4    4.7e-45  154.0  38.4    2.0  2  MFS_1       Major Facilitator Superfamily
    2.2e-11   43.3   8.8    2.2e-11   43.3   8.8    3.0  2  Sugar_tr    Sugar (and other) transporter
    2.5e-10   39.4   2.6    5.1e-10   38.4   2.6    1.5  1  TRI12       Fungal trichothecene efflux pump (TRI12)
    1.7e-05   24.3   5.4    1.7e-05   24.3   5.4    2.3  2  MFS_4       Uncharacterised MFS-type transporter YbfB
    4.9e-05   22.1   0.7    4.9e-05   22.1   0.7    3.6  4  MFS_2       MFS/sugar transport protein
  ------ inclusion threshold ------
       0.18   10.6  17.1      0.042   12.7   1.3    3.1  3  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.0  38.4   1.6e-48   4.7e-45       4     349 ..      11     343 ..       8     347 .. 0.89
   2 !    4.1   7.9    0.0061        18     123     177 ..     325     380 ..     321     390 .. 0.77

  Alignments for each domain:
  == domain 1  score: 154.0 bits;  conditional E-value: 1.6e-48
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagal 102
                 +++l+  +++++++ lp  +a+dlg+s++++++++++y +g+a a+l++Gr++dr Gr++v ++g+++f++++ll++ a+++  +l++r++qG+gag+ 
  CTQ26150.1  11 LVLLYPSGIDMYLVGLP-RIAQDLGASEAQLHIAFSVYLAGMASAMLFAGRIADRSGRKPVAIVGAAIFVIASLLCAQAHTSSHFLIGRFIQGIGAGSC 108
                 66788889999******.9*****************************************************777772377779*************** PP

       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawk 201
                 + ++ a+++d   +++r+++++ll++ + + ++l+p+lg l++  + W+++fy +++++++++vl ++ l+e++p+ ++++  ++      a+ +  + 
  CTQ26150.1 109 YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKYPWQSLFYTMTGMGAMVAVLSVFILRETRPTAPPQAASPQ----HDAGESL-LN 202
                 *****************************************************************99999999999999999999....6666666.77 PP

       MFS_1 202 allkdpvlwillialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtss 299
                  ++ ++    lli+ l+++ ++ +++  +p++++e +g++ g ++++  +al+a++++++++ + + +  +++r+ +l + +l+l+a + l+l+     
  CTQ26150.1 203 RFFLSR----LLITTLSVT-VILTYVNVSPVLMMEEMGFDrGTYSMA--MALMAMISMAVSFSTPFALSLFNPRTLMLTSQVLFLAAGVTLILATRQ-A 293
                 888888....777777775.9999*****************889999..999999999998888888899999777777777777777777777766.4 PP

       MFS_1 300 avllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslgg 349
                  +l+ l+++++Gf +gf +++++al    + +  a +++g+++++gs  +
  CTQ26150.1 294 VTLIGLGMICAGFSVGFGVAMSQALGPFTLRAGVASSVLGIAQVCGSSLW 343
                 5555559999********************99***********9998665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0061
       MFS_1 123 igllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepp 177
                  g++s+  +++ ++g  l  +la+ +g +a+ ++++i+ + ++v l+lll++++ +
  CTQ26150.1 325 AGVASSVLGIAQVCGSSLWIWLAAIIGLSAMNMLIGILIACSIVsLVLLLVVTPSR 380
                 58899999999999999999999999999999999999999999664455444433 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   8.8   7.4e-15   2.2e-11      43     144 ..      35     133 ..      22     183 .. 0.75
   2 ?   -4.4  21.4       2.3   6.7e+03      48     123 ..     241     315 ..     214     378 .. 0.83

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 7.4e-15
                 H...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHH CS
    Sugar_tr  43 essvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvs 141
                 +s+ ++ + +s++l+G +   lfag ++dr GRk++ +++a++fvi+++l+a a+   +   +++gR++ Gig+G ++v++   +     ++ R ++ s
  CTQ26150.1  35 ASEAQLHIAFSVYLAGMASAMLFAGRIADRSGRKPVAIVGAAIFVIASLLCAQAH---TSSHFLIGRFIQGIGAGSCYVVAFAILRDTLDDRRRAKVLS 130
                 467789999**********************************************...8999*****************99777777766666655444 PP

                 HHH CS
    Sugar_tr 142 lyq 144
                 l +
  CTQ26150.1 131 LLN 133
                 444 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 2.3
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlv 123
                 +++ ++++  ++++ s+ + ++   f  +  +l++ vlf++++v  ++a+ +++v ++ +g + +G++vG+  +++
  CTQ26150.1 241 YSMAMALMAMISMAVSFSTPFALSLFNPRTLMLTSQVLFLAAGVTLILAT-RQAVTLIGLGMICAGFSVGFGVAMS 315
                 6788999999****************************************.66*****************987765 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   2.6   1.7e-13   5.1e-10      66     214 ..      25     175 ..       7     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.7e-13
       TRI12  66 alpnilqdvgqsenssl.fstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagasplfv.gelmsn. 161
                  lp i qd+g se +     +++  g a ++l  gr++dr gr+p+ i+   + ++ +++ + a     +l    + g+ ag +    + +  + + + 
  CTQ26150.1  25 GLPRIAQDLGASEAQLHiAFSVYLAGMASAMLFAGRIADRSGRKPVAIVGAAIFVIASLLCAQAHTSSHFLIGRFIQGIGAGSCYVVAFAIlRDTLDDr 123
                 69***********99651457899************************************99********************99876654425555551 PP

       TRI12 162 .ktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavlliv 214
                  ++k+l ll   i  + +  l+p lg  + ++  w+ +fy    + a+  +l v
  CTQ26150.1 124 rRAKVLSLLNG-ITCI-IPVLAPVLGHLIMLKYPWQSLFYTMTGMGAMVAVLSV 175
                 15677777654.3333.4448*******************99988776544433 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   5.4   5.5e-09   1.7e-05      16     183 ..      26     196 ..      21     224 .. 0.67
   2 ?   -7.4  19.3         6   1.8e+04      58     159 ..     238     351 ..     227     366 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 5.5e-09
       MFS_4  16 LPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlr.llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaa 113
                 LP + ++++ s +q+ +  ++ ++G ++ a+l+a + + +  R   + +g+   v++ l +a ++  + fl+ Rf+ G++++   v++ ++    + + 
  CTQ26150.1  26 LPRIAQDLGASEAQLHIAFSVYLAG-MASAMLFAGRIADRSGRKPvAIVGAAIFVIASLLCAQAHTSSHFLIGRFIQGIGAGSCYVVAFAILRDTLDDR 123
                 7888888888888877666665555.67777777777766666657788888889999999999999******************************** PP

       MFS_4 114 rrervgallfaGvGlGiavsgllvllll..qlglsasslWlalavlsavll.llvalllp...raalreasaaaea 183
                 rr++v++ll    G+  +++ l+ +l++   l+  ++sl + ++ + a++  l v++l+     a++++as +  a
  CTQ26150.1 124 RRAKVLSLLN---GITCIIPVLAPVLGHliMLKYPWQSLFYTMTGMGAMVAvLSVFILREtrpTAPPQAASPQHDA 196
                 *******995...455555544444443003444556666555555444440444444442123444444444443 PP

  == domain 2  score: -7.4 bits;  conditional E-value: 6
       MFS_4  58 RlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrervgallfaG..vGlGiavsgllvllllqlglsassl.... 150
                 R +  +++ + ++  +a+++ + fa+ l     + ++s v + +++ + +  + +a   + ++++ aG  vG+G+a+s  l +++l++g+++s+l    
  CTQ26150.1 238 RGTYSMAMALMAMISMAVSFSTPFALSLFNPRTLMLTSQVLFLAAGVTLILATRQAVTLIGLGMICAGfsVGFGVAMSQALGPFTLRAGVASSVLgiaq 336
                 54433333333334444444445554444444555888888777776666665667777777899999889*********************9998999 PP

       MFS_4 151 ......Wlalavlsa 159
                       W++la++  
  CTQ26150.1 337 vcgsslWIWLAAIIG 351
                 999999998887533 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.7   1.7e-08   4.9e-05     255     345 ..      33     122 ..      29     128 .. 0.86
   2 ?    0.9   0.0     0.043   1.3e+02     395     424 ..     126     155 ..     121     158 .. 0.89
   3 !    7.8  15.3   0.00035         1     169     334 ..     158     314 ..     133     320 .. 0.80
   4 ?    0.7   5.7     0.051   1.5e+02     261     310 ..     325     377 ..     314     384 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.7e-08
       MFS_2 255 lg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDy 345
                 lg ++++  + + v  ++++ +++++ ++a r g+k ++++ga++ ++ ++l+  +      +fl+  +i g+g+g++++++ ++l d+ D+
  CTQ26150.1  33 LGaSEAQLHIAFSVYLAGMASAMLFAGRIADRSGRKPVAIVGAAIFVIASLLCAQA--HTSSHFLIGRFIQGIGAGSCYVVAFAILRDTLDD 122
                 66567777788888899999****************99999988877777776655..78889***************************98 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.043
       MFS_2 395 pqvvlalrllyavlpavlllvallllvryp 424
                 ++v++ l+ +++++p++  +++ l+++ yp
  CTQ26150.1 126 AKVLSLLNGITCIIPVLAPVLGHLIMLKYP 155
                 6788999999*******************9 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00035
       MFS_2 169 kgylifaliialLmllgviivvlgtkervemrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlg.ngsaasvfll 266
                 + + +++ ++a++++l+v+i+    +e       + t+ +++ s   + +e++ nr fl  ll+  l ++ ++ + + +   +   +g ++  +s+ ++
  CTQ26150.1 158 SLFYTMTGMGAMVAVLSVFIL----RET------RPTAPPQAASPQHDAGESLLNRFFLSRLLITTLSVTVILTYVNVSPVLMMEEMGfDRGTYSMAMA 246
                 445667777777777777777....655......4568999999999************9999999999999999999999999****99999999888 PP

       MFS_2 267 vvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaall 334
                 ++ + ++++++  + + + ++ ++++l +++l ++ +v ++l++ + ++l  + +++agf+vg+ + +
  CTQ26150.1 247 LMAMISMAVSFSTPFALSLFNPRTLMLTSQVLFLAAGVTLILATRQAVTLIGLGMICAGFSVGFGVAM 314
                 8855555667778888888999999999**999999999999999999999999******99876655 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.051
       MFS_2 261 asvfllvvtisallgiplwqplakrlgkk.ntyllgalltivllvlvlll..q 310
                 a v + v+ i+++ g+ lw +la+ +g     +l+g+l++ ++  lvlll  +
  CTQ26150.1 325 AGVASSVLGIAQVCGSSLWIWLAAIIGLSaMNMLIGILIACSIVSLVLLLvvT 377
                 5667778889999**************66244555566655555555544334 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.3   1.4e-05     0.042     254     359 ..      32     137 ..       7     163 .. 0.90
   2 ?    2.9   2.9     0.013        39      70     192 ..     163     287 ..     141     298 .. 0.66
   3 ?    3.8   0.7     0.007        21      37      95 ..     326     386 ..     321     392 .] 0.64

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
  MFS_1_like 254 elgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqg 352
                 +lgas+  l ++  +  ++     +fa ++ ++ G   + i++  ++++  ll a  +  +  l+  +++gi  g ++++a    ++   ++ +a++ +
  CTQ26150.1  32 DLGASEAQLHIAFSVYLAGMASAMLFAGRIADRSGRKPVAIVGAAIFVIASLLCAQAHTSSHFLIGRFIQGIGAGSCYVVAFAILRDTLDDRRRAKVLS 130
                 7999999999999999999999*******************99999999999999999999999*********************************** PP

  MFS_1_like 353 llsglyf 359
                 ll+g+++
  CTQ26150.1 131 LLNGITC 137
                 ***9987 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.013
  MFS_1_like  70 lslllsavlflsllfippskerqeesklevsvaqdvd...aektfwilfllvvlasfflaailvlldaatlkelgedrkdyGrqr.lfGsvGyaifafi 164
                 ++ + ++v++ls++++   + r+  +   +s ++d +    +  f + +l+ +l  +++ + + +  +++++e+g dr+ y+    l   +++a+ +f 
  CTQ26150.1 163 MTGMGAMVAVLSVFILR--ETRPTAPPQAASPQHDAGeslLNRFFLSRLLITTLSVTVILTYVNVSPVLMMEEMGFDRGTYSMAMaLMAMISMAV-SFS 258
                 55566778888887555..3333333333333333332335666777888888888888888888889999999999999987651555666665.577 PP

  MFS_1_like 165 tGilidhysvnllp.ysallyvlaallvi 192
                 t +++  ++  +l   s++l+++a++ +i
  CTQ26150.1 259 TPFALSLFNPRTLMlTSQVLFLAAGVTLI 287
                 88888777777666655556665555544 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.007
  MFS_1_like  37 giitlilpltsilsppiwgvlaDrfgkrkk.....vvilslllsavlflsllfippskerqees 95 
                 g+ +++l + ++ ++ +w +la  +g  +      ++i+++++s+vl+l   ++ ps+  q ++
  CTQ26150.1 326 GVASSVLGIAQVCGSSLWIWLAAIIGLSAMnmligILIACSIVSLVLLL---VVTPSRVAQYDE 386
                 5667788889999999999999999977665544444555555555444...444555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 2961.01
//
Query:       CTQ26151.1  [L=319]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-13   48.5   5.7    1.2e-12   47.7   5.7    1.4  1  LysR_substrate  LysR substrate binding domain
    5.7e-12   45.4   0.0    1.2e-11   44.4   0.0    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0031   17.3   0.8     0.0031   17.3   0.8    1.8  2  HTH_5           Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
      0.011   15.5   0.1      0.029   14.2   0.1    1.7  1  DUF746          Domain of Unknown Function (DUF746)
      0.016   15.4   0.6      0.032   14.4   0.6    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.04   13.9   0.0      0.088   12.8   0.0    1.5  1  HTH_11          HTH domain
      0.051   13.6   0.0      0.098   12.7   0.0    1.4  1  HTH_Mga         M protein trans-acting positive regulator (MG
      0.072   13.1   0.0       0.13   12.4   0.0    1.3  1  Cro             Cro
       0.14   11.7   0.9       0.27   10.8   0.9    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   5.7     6e-16   1.2e-12      24     206 ..     115     313 ..      98     316 .. 0.87

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 6e-16
                     HHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..........CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGGGCTSEEEE CS
  LysR_substrate  24 llarfraryPevelelvegdseelldllaegelDlairagpp..........edsglearpLaeeplvlvaspdhpLargepvsledLadeplil 108
                     l +r  +ryP+  ++l+  d  + ld++ +ge+D+++++++            +  +++++L+++   + +++dhp a +e+++l+++ ++p+i+
      CTQ26151.1 115 LSQRIYQRYPQALIRLRNWD-YDSLDAIIRGEVDIGFCGREShpqsrellslLPWYIDFDVLFTDLPQVWLRADHP-ALREEWDLAAFLRYPHIT 207
                     668999***********555.9******************99999888888866677999***************7.5577************** PP

                     ESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHT..TS-BEEEEGGGHHCCC..HTTTEEEEEESST.....TCEEEEEEEEETTCCCH CS
  LysR_substrate 109 leegsglrdlledalreaglkprvalevnsleallalvaa..GlGiallprsavrdel..adgrlvalplpep.....plprelylvyrkgrels 194
                        + +  ++l+d+l+e g k++val+v  +e  l ++a+    ++a +pr+   ++    +  lv +plp        l+ ++ l+++k+   +
      CTQ26151.1 208 ICWEQRDTWALDDVLQELGYKRNVALTVPGFEQSLFMAAQpqHTMLATAPRYCQ-HYNqqHQLPLVSRPLPLEaqhleKLRVPFTLLWHKRNSYN 301
                     **************************************9633679999999995.44412444567777777799**99**************** PP

                     HHHHHHHHHHHH CS
  LysR_substrate 195 pavrafidflre 206
                     p++ +++d l++
      CTQ26151.1 302 PKLVWLRDTLKA 313
                     ********9986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0     6e-15   1.2e-11       1      57 [.      10      66 ..      10      67 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 6e-15
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-H CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTe 57
                l++l +++ + +e s+tr A+++++s++a+s+++++L++++++pLf++t  gl +T+
  CTQ26151.1 10 LNLLLCLQLLTQELSVTRTAKRMNVSPSALSKSLAKLRAWFDDPLFVKTPLGLAPTP 66
                57888999999*************************************999****98 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.8   1.6e-06    0.0031      10      40 ..      17      47 ..      11      48 .. 0.92
   2 ?   -2.6   0.3       2.7   5.4e+03      34      40 ..     281     287 ..     281     287 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.6e-06
                HHTTSSEEHHHHHHHHTS-HHHHHHHHHHHH CS
       HTH_5 10 lLaegelcvcelaeelglsqstvShHLkkLr 40
                +L  +el+v+  a+ +++s+s++S  L+kLr
  CTQ26151.1 17 QLLTQELSVTRTAKRMNVSPSALSKSLAKLR 47
                6888**************************9 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.7
                 HHHHHHH CS
       HTH_5  34 hHLkkLr 40 
                 +HL kLr
  CTQ26151.1 281 QHLEKLR 287
                 7****98 PP

>> DUF746  Domain of Unknown Function (DUF746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.5e-05     0.029       7      41 ..      17      51 ..      12      53 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.5e-05
      DUF746  7 rlLsqplslaeaadllgtdegiiakwvreFrewll 41
                 lL q+ls++  a+++ +++   +k +++ r+w +
  CTQ26151.1 17 QLLTQELSVTRTAKRMNVSPSALSKSLAKLRAWFD 51
                69*******************************87 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.6   1.6e-05     0.032      24      47 ..      24      47 ..      19      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
                    -HHHHHHHHTS-HHHHHHHHHHHH CS
  Fe_dep_repress 24 ktkdlaerLnvspssVsemlkkLe 47
                    ++++ a+r+nvsps  s++l kL+
      CTQ26151.1 24 SVTRTAKRMNVSPSALSKSLAKLR 47
                    68899*****************97 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.4e-05     0.088       6      43 ..      13      50 ..      10      58 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.4e-05
      HTH_11  6 lelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                l +L   ++ +s  + A+++nvS ++  + +++L+++ 
  CTQ26151.1 13 LLCLQLLTQELSVTRTAKRMNVSPSALSKSLAKLRAWF 50
                5555555566999***********************97 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.9e-05     0.098      12      56 ..      17      58 ..      10      59 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.9e-05
     HTH_Mga 12 elLteneksltldelakeLglseltlqsdiseLnelFpeelsivi 56
                 lLt+   +l+++  ak+++ s ++l + + +L++ F++ l++++
  CTQ26151.1 17 QLLTQ---ELSVTRTAKRMNVSPSALSKSLAKLRAWFDDPLFVKT 58
                56666...99*****************************999976 PP

>> Cro  Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.3e-05      0.13      16      37 ..      26      47 ..      16      51 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.3e-05
                HHHHHHHTS-HHHHHHHHHCT- CS
         Cro 16 aktAkdlgvkqsaIsKAlkakR 37
                ++tAk ++v +sa+sK l + R
  CTQ26151.1 26 TRTAKRMNVSPSALSKSLAKLR 47
                79****************9887 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   0.00013      0.27       3      42 ..       7      47 ..       5      48 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
      HTH_24  3 etdrkILelLqk.nprisqreLAerlglSpstvnrrlkrLe 42
                 +d+++L +Lq     +s +  A+r ++Sps++++ l +L 
  CTQ26151.1  7 SLDLNLLLCLQLlTQELSVTRTAKRMNVSPSALSKSLAKLR 47
                6899*********************************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2487.52
//
Query:       CTQ26152.1  [L=242]
Description: putative phosphopantetheinyl transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1949.88
//
Query:       CTQ26153.1  [L=188]
Description: chromate reductase, Class I, flavoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-38  131.3   0.0      3e-38  131.0   0.0    1.1  1  FMN_red       NADPH-dependent FMN reductase
    5.5e-08   32.8   0.0    7.6e-08   32.3   0.0    1.3  1  Flavodoxin_2  Flavodoxin-like fold


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   0.0   3.4e-42     3e-38       2     149 ..       6     148 ..       5     153 .. 0.95

  Alignments for each domain:
  == domain 1  score: 131.0 bits;  conditional E-value: 3.4e-42
                 EEEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEE.ETTTS.--..---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT CS
     FMN_red   2 kilvisGSlrkgsntrklaewaaealkeagaeveli.dladlilpcalcdkdlesegqtsddvaellekiaaadaliivtPeYngsysgllKnalDrls 99 
                 k++ + GSlrkgs++ ++a+ +   +++ g++++ +  ++d   p  l+d+d ++e++ ++ v+e+ ++i++ad+++ivtPeYn+s++g lKna+D+ls
  CTQ26153.1   6 KVVTLLGSLRKGSFNGMVARTLPGIAPA-GMDISALpSIGD--IP--LYDADMQEEEGFPQRVQEIAQQIREADGVVIVTPEYNYSVPGGLKNAIDWLS 99 
                 9*************************77.888888866777..7*..*******99******************************************* PP

                 -.SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHHHHHHHTT-EEEECSEEE CS
     FMN_red 100 rtrgkkelrgKpvalvavgggrrgglraeeqlrqvlaelgaivvpraava 149
                  + ++++l+gKpv++ + + g+ gg+r++++lrq+l +l+a+v+++++++
  CTQ26153.1 100 -RLPEQPLSGKPVLIQTSSMGAIGGARCQYHLRQILVFLDAMVMNKPEFM 148
                 .6899*****************************************9997 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   8.5e-12   7.6e-08      37     134 ..      36     117 ..       6     145 .. 0.65

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 8.5e-12
                   EEEEHHCC.T-----CCCCHCCHHHHTT.CHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHHHHHHHHHS-TTTSCEETTCSSCCCCTTTTSEEEEE CS
  Flavodoxin_2  37 tvrdLyad.flpvlttrdlaaklayeek.padveseqiekllaadaivlqfPlwwfgvPailKgwiDrvltagfafyteeggegrgggLkgkkalvi 131
                   ++  L  +  +p  ++     ++ +ee+ p  v++ + +++++ad +v+++P ++++vP  lK+ iD   +               + L+gk++l+ 
    CTQ26153.1  36 DISALPSIgDIPLYDA-----DMQEEEGfPQRVQEIA-QQIREADGVVIVTPEYNYSVPGGLKNAIDWLSRLPE------------QPLSGKPVLIQ 114
                   4555555555555555.....2334444345555555.9****************************9866433............45666666665 PP

                   EEE CS
  Flavodoxin_2 132 vtt 134
                   +++
    CTQ26153.1 115 TSS 117
                   555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1531.35
//
Query:       CTQ26154.1  [L=445]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-42  143.9  52.9    5.3e-42  143.9  52.9    1.9  2  Xan_ur_permease  Permease family


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.9  52.9   2.9e-46   5.3e-42       3     387 ..      31     404 ..      29     406 .. 0.91
   2 !    1.5   0.8    0.0052        93      96     131 ..     403     437 ..     400     443 .. 0.74

  Alignments for each domain:
  == domain 1  score: 143.9 bits;  conditional E-value: 2.9e-46
                      HHHHHHHHHHHHHHHHHHHHHTTTS-.........H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-....HHHHHHHHHHHH CS
  Xan_ur_permease   3 llllglQhllamfaalvvvPllvgdalglaeelrqlisatllasGiatllqllifgirlpillgssfafvtalmialGsaedieialagllgal 96 
                      + ++g++++l+m++ + v+P ++g a    ++++ ++ +t+l+++ +++l+ l+++++++++ +++++++ a+++++++    +   ++ +ga+
       CTQ26154.1  31 EAIAGFTTFLTMVYIVFVNPQILGVA---GMDTSAVFVTTCLIAAFGSILMGLFANLPVALAPAMGLNAFFAFVVVQAM----GLPWQVGMGAI 117
                      679***********************...37899************************************989999986....55555556677 PP

                      HHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHH CS
  Xan_ur_permease  97 lvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaavegltvvslkllllavvvllvilllsvflkglfsqlpiLig 190
                      +  +v  +l+ ++ +r + + +ip    ++++ +iGl++   ++k++g + a+ e   v  + l++ +v + ++++ ++  l   +   ++L+ 
       CTQ26154.1 118 FWGAVGLLLLTIFRVRYWMIANIPLSLRVGITSGIGLFIGMMGLKNAGVIVANPET-LVSIGHLTSHSVLLGVLGFFIIAILASRNIHAAVLVS 210
                      77777777777788888*********************************977666.788888889999999999999999************* PP

                      HHHHHHHHHHHHHTTSSHHHHS-SS-----------HH...H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TII..IIIHHHHHHHHHHHHH CS
  Xan_ur_permease 191 iiagwllalfmgivnlspevseapwfqlpsplkfgtpl.fnlgliltvlavalvavvesvGdiravakvvgrslkp..kpdlrralladGlatl 281
                      i++++ll +++g v+ +++vs+ p +    +++      +nlgl  ++++++lv++++s G++++v + +g+ + +   p+++ al++d+++++
       CTQ26154.1 211 IVVTTLLGWMLGDVHYTGIVSAPPSAAS-VIGQVDLAGsLNLGLAGVIFSFMLVNLFDSSGTLIGVTDKAGLADANgkFPRMKQALFVDSVSSV 303
                      ******************8877777755.4556555546********************************99999989*************** PP

                      HHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHHHHH CS
  Xan_ur_permease 282 lsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdldsarnllivav 375
                       ++++G++ vt+y+e+  +v+++    +r+++ta v+ il+ l+ +l++l+ ++P+++  G +l+++g+++ s+++ ++++dl++a  ++i+av
       CTQ26154.1 304 AGSFIGTSSVTAYIESSSGVSVG----GRTGLTAVVVGILFLLVIFLSPLAGMVPGYAAAG-ALIYVGVLMTSSLARVKWSDLTEAVPAFITAV 392
                      ***********************....*******************************666.5789**************************** PP

                      HHHHHHH----- CS
  Xan_ur_permease 376 slvlGlgvatvp 387
                      ++ +  +++ ++
       CTQ26154.1 393 MMPFSFSITEGI 404
                      ****99998765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.0052
                      HHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHH CS
  Xan_ur_permease  96 llvagvlfilisltglrgrlarlipPvvtgpvvlli 131
                      +++ g+++  ++++g++ rl++l p v+++ ++ ++
       CTQ26154.1 403 GIALGFISYCVMKIGTG-RLRELSPCVIIVSLLFVL 437
                      56778888888888884.888888888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3147.49
//
Query:       CTQ26155.1  [L=221]
Description: putative hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-23   82.3   0.0    5.1e-23   82.1   0.0    1.0  1  HAD_2           Haloacid dehalogenase-like hydrolase
    2.8e-11   44.1   0.0    2.1e-10   41.2   0.0    1.9  1  Hydrolase       haloacid dehalogenase-like hydrolase
    0.00021   21.7   0.0    0.00028   21.4   0.0    1.3  1  HAD             haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.05   13.7   0.0      0.079   13.0   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like
       0.12   12.5   0.0        1.2    9.3   0.0    2.3  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   1.4e-26   5.1e-23       1     176 [.       7     183 ..       7     185 .. 0.91

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 1.4e-26
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkk...kevkpydgvkelLeeLkeagy 96 
                 + FD DgTl+d+e +   a+ ++++e+g+     e ++++ g +l e+++ ++ ++ ++   ++l  +y++e  +    e+++++g++ lL+ +    +
  CTQ26155.1   7 VFFDCDGTLVDSEVICSRAYVHMFQEFGITLDLAEIFKRFKGVKLYEIIDTINAEYGVNLQKATLEPIYRAEVARlfdSELEVIPGAQALLDAV---SV 102
                 57*************************996445566799****************999997777767777766666669**************9...9* PP

       HAD_2  97 klgivTsksreaveekleqlgiesyF.dvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                  + +v+++  ++++++l ++g+ ++F d  +++ d+++ KPdp+++  a e +++k+e++i v Ds+ + +++ +ag++v+
  CTQ26155.1 103 PMCVVSNGPVSKMQHSLGRTGLLRHFtDRLYSGYDIQRWKPDPALMFHAAEAMQVKAENCILVDDSSAGAQSGIAAGMEVF 183
                 *********************998873679999*********************************************986 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0     6e-14   2.1e-10       2     210 .]       5     179 ..       4     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 6e-14
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH...HHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgal...tgfatfigrgayaigkpewltaldippdlgaaigsaqsqg 97 
                 ++v+fD+dGTL+++e     vi+s+                  a+v+ +++ ++ l   + f +f+g  + +    + ++a+            +q++ 
  CTQ26155.1   5 EAVFFDCDGTLVDSE-----VICSR------------------AYVHMFQEFGITLdlaEIFKRFKG--VKLYEIIDTINAE--------YGVNLQKAT 70 
                 58*************.....99999..................889999999666633333333322..2222223333333........455667777 PP

                 HHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGE.SEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  98 rtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyf.daviasdietvakpspegkvaaireLqgkpeeva 194
                  + ++  a++ ++f  +   +v p+a  ++ +     +++++++++  +  ++ + + G  ++f d  +++++    kp+p  + +a++ +q+k e+++
  CTQ26155.1  71 LEPIYR-AEVARLFDSEL--EVIPGAQALLDAVS---VPMCVVSNGPVSKMQHSLGRTGlLRHFtDRLYSGYDIQRWKPDPALMFHAAEAMQVKAENCI 163
                 777777.55555555555..5*****99999977...99********999998999999988888********************************** PP

                 EEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxx RF
   Hydrolase 195 mVGDgvnDaaalaaAg 210
                  V+D+  +a+ + aAg
  CTQ26155.1 164 LVDDSSAGAQSGIAAG 179
                 *************998 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   7.8e-08   0.00028       1     119 [.       7     119 ..       7     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 7.8e-08
         HAD   1 alfDfDgTLldgdsle..lllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaah 97 
                 ++fD DgTL+d++ +   ++++ + + g   +++++  +++   ++e+ ++ +a++  +l++  a l++   ae++r+++++ +  ++ pga +ll+  
  CTQ26155.1   7 VFFDCDGTLVDSEVICsrAYVHMFQEFGITLDLAEIFKRFKGVKLYEIIDTINAEYGVNLQK--ATLEPIYRAEVARLFDSELE--VI-PGAQALLD-- 98 
                 79**********88888866664445554445666666666666888887777777666665..55555555666666644444..45.********.. PP

         HAD  98 raaGdrvvvvSgglrplvepll 119
                  a  ++ +vvS+g+   ++  l
  CTQ26155.1  99 -AVSVPMCVVSNGPVSKMQHSL 119
                 .99**********987666555 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.2e-05     0.079       4      45 ..     142     182 ..     139     199 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.2e-05
                     TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EE CS
  Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwks 45 
                     KP p ++  a+e+++++ e+++++ D+  +  +++ +aG++ 
      CTQ26155.1 142 KPDPALMFHAAEAMQVKAENCILVDDS-SAGAQSGIAAGMEV 182
                     9**************************.***********986 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00032       1.2       1      39 [.       7     110 ..       7     127 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00032
                  EEEESTTTSE....................................................................ETTEE-TTHHHHHHHHHHTT CS
  Hydrolase_6   1 flfDidGvLw....................................................................rgdkaipgaaealnalraag 30 
                  ++fD+dG+L+                                                                     + ++ipga+ +l+a+    
   CTQ26155.1   7 VFFDCDGTLVdsevicsrayvhmfqefgitldlaeifkrfkgvklyeiidtinaeygvnlqkatlepiyraevarlfdSELEVIPGAQALLDAV---S 101
                  68********555555555555555555555555555555555555555555555555555555555555555555544555555555555443...3 PP

                  -EEEEEE-- CS
  Hydrolase_6  31 kpvvllTNn 39 
                  +p+++++N+
   CTQ26155.1 102 VPMCVVSNG 110
                  555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1696.43
//
Query:       CTQ26156.1  [L=238]
Description: putative 6-phosphogluconolactonase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-18   66.2   0.0    5.4e-18   65.7   0.0    1.2  1  Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phospho


Domain annotation for each model (and alignments):
>> Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0     3e-22   5.4e-18      26     218 ..      28     220 ..      11     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 3e-22
                      S-EEEEE--SHCHHHHHHHHHCSG.GGGGS-GGGEEEEESEEESS-TTS.TT-HHHHHHHHTGGGS---GGGEE-S-TTSSTHHHHHHHHHHHH CS
  Glucosamine_iso  26 graslalsGGstpkalyealaeeeeaaaaldwskvhvflgDERfVpadd.pdsNaklareallskvkipeanvhpikesaaeapeaaaaayeee 118
                      +r++la++ Gstpk++ye l ++ + +     ++vh +  DE     ++ +      +r+ ++++ +i+e+n+h++         + aa+ +++
       CTQ26156.1  28 RRVNLAVTAGSTPKRMYEHLTAAVKGK--AFYDRVHYYNFDEIPFRGQSrEGVTISNLRQLFFTPAQIKEENIHKLT-------LDNAAQHDRQ 112
                      689******************877544..7899*********876655515568899********9**********4.......34688999** PP

                      HHHHCCSSSSSESEEEE---TTS-BTTB-TTCHHHH.......CSSSSEEEESSBS......TSSS-EEEE-HHHHTTCSEEEEEEESHHHHHH CS
  Glucosamine_iso 119 lkellakelpvfDlvlLGmGpDGHtaSLFPgspele.......etdrlvvavedsp......kpppeRitlTlpvlnsarevlflvaGeeKaea 199
                      l+e+       +Dl++LG+ +DGH +   P+++ ++        + ++++ + +s+        p++ +t+  + + +a+++l++v+G++Ka+a
       CTQ26156.1 113 LEEA-----GGLDLMVLGLEADGHFCGNLPNTTRFHdqtvevpIHGEMIALIANSEmggdisAVPNSYVTMGPRSVMAAKNLLLIVSGAAKAHA 201
                      **84.....45**********************986566666644557777777777888877889**************************** PP

                      HHHHHTT..TTTSGGGGH- CS
  Glucosamine_iso 200 leevlsgedpeelPaalve 218
                      l++v++g  + ++Pa++++
       CTQ26156.1 202 LKQVVEGPVSVQVPASVLK 220
                      ******99999****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1833.75
//
Query:       CTQ26157.1  [L=388]
Description: putative xylanase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-20   74.1   0.0    5.1e-20   72.2   0.0    1.8  1  Esterase       Putative esterase
    1.8e-07   31.4   0.0    4.3e-07   30.2   0.0    1.5  1  CBM_48         Carbohydrate-binding module 48 (Isoamylase N-t
      0.002   18.0   0.1      0.018   14.8   0.1    2.1  1  Abhydrolase_2  Phospholipase/Carboxylesterase
  ------ inclusion threshold ------
      0.049   13.2   0.0      0.076   12.6   0.0    1.3  1  DLH            Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0   1.1e-23   5.1e-20       1     243 [.     149     378 ..     149     386 .. 0.71

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 1.1e-23
                 ETTTTEEEEEEEEE.CC..GGTTTEEEEEEE--T....THHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSB.B.TTEEETTCCCCCC CS
    Esterase   1 SealgreikvqvyLPedy.spgrkypvvylldGl....tgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlg.arfyenategpgaea 93 
                 S+al+ e++++v +P++y  +g ++pv+y+ +G+     +  +++r+ + +++l +eg+i+++  vvvp+ +++        + a +++  +++  ++ 
  CTQ26157.1 149 SKALNAERRLYVWTPPGYsGTGDPLPVLYFYHGFgdsgLSAIDQGRIPQIMDNLLAEGKIKPML-VVVPDTETD-------IPeAVAENFPPQERRKTF 239
                 899***************9999**************88788899*************9887765.556666665.......232333333333333333 PP

                 HC.......HHHHTHHHHHHHHHCSEECCC..EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CCHCHHHCTTCCHHHCC-CCCCHCHHCHTTSE CS
    Esterase  94 ye.......tfltqeLlplldanfrtapdg..ravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgqeekeawqendpvllakelsaslka 183
                 y        + l q + pl+da+f++++d+  ra+aG S+GG+ AL+ +++h ++Fg  + fS++  ++ ++          +++++ l++  + +++ 
  CTQ26157.1 240 YPlnaqaadKELMQDIIPLIDARFNVRKDAdgRALAGLSQGGYQALVSGMNHLESFGWLATFSGVTTTT-VPN---------AGVEAQLKQPDAINKQL 328
                 3333322358899999************9999*******************************983333.222.........44555554444444444 PP

                 EEEEEEECTTBCCCHTSCHHHHHHHHHHHCCHHHHCCCCCCTT-SCCCC--SSHHH.HHHH CS
    Esterase 184 lriyldvGtseddlgeqlsveilevlarnrelkeqlaargvegedheydGghswey.Wraq 243
                     ++vG++++       v   +++  ++el+    ++ ++ ++h+y+G ++  + Wr++
  CTQ26157.1 329 RNFTVVVGEKDS-------VTGKDIAGLKSELE----KQQIKFDYHQYPGLNHEMDvWRPA 378
                 445566777776.......33344444444444....666677777777755544447765 PP

>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   9.7e-11   4.3e-07       7      72 ..      42     102 ..      37     116 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 9.7e-11
                 ESSCEEEEEEEE-TTSSEEEEEECGTTTEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEET CS
      CBM_48   7 sedekgvnfrvwapnAekVslvldfnnwdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgp 72 
                 ++d k++++r++ap A++Vs+v      +  +++++ +  +gvW++  ++  p +  +Y+y +++ 
  CTQ26157.1  42 NAD-KSITYRLFAPDARRVSIVTGATPDSFVSHDMT-KAADGVWTWKSEPMKP-N--LYEYYFDVD 102
                 444.79******************************.69**********6666.4..677666544 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   4.1e-06     0.018      15     202 ..     174     373 ..     167     376 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.1e-06
                    EEEEEE--TT--SHHHHHHHH..........TT--TTEEEEEE---EEE-GGGTT-EEE-SS-B--SSTTS..-B-HHHHHHHHHHHHHHHHHHHH CS
  Abhydrolase_2  15 avviflHGlGdsghawaeaakt.........eaalpnikfifphgpelpvtlnggmrmpaWfdlvglspek..kedeagikksaekleelidaelk 99 
                    +v+ f HG Gdsg +  ++ ++         e + +++  ++p    + + + +       f+ +++ + +   + +a  k+ ++ +  lida ++
     CTQ26157.1 174 PVLYFYHGFGDSGLSAIDQGRIpqimdnllaEGKIKPMLVVVPDTETDIPEAVAEN-----FPPQERRKTFypLNAQAADKELMQDIIPLIDARFN 264
                    688899*******5555554441100000003444555556666666555555555.....8888888888877788888999************* PP

                    TT--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---...TTGGGTT...TTS-GGGGG-EEEEE.EETT-SSS-HHHHHHHHHHHHTTS-G CS
  Abhydrolase_2 100 kgipssriiigGFSqGaalalylaltlpkklggivafsgal...plsqkle...ssatavtkklpilqi.HgeeDpvvplalgkaakevlkkllkk 188
                       +++  ++ G SqG+  al +++   +  g    fsg+    ++++ +e   +++ a++k+l  + +  ge+D v    ++ + +e l+k + k
     CTQ26157.1 265 VRKDADGRALAGLSQGGYQALVSGMNHLESFGWLATFSGVTtttVPNAGVEaqlKQPDAINKQLRNFTVvVGEKDSVTGKDIAGLKSE-LEKQQIK 359
                    *************************999999999999997511134443331112366777777766651455566555555554444.4444445 PP

                    EEEEEETT--SS-- CS
  Abhydrolase_2 189 velksyeglaHsid 202
                     + ++y+gl H++d
     CTQ26157.1 360 FDYHQYPGLNHEMD 373
                    88888888888765 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.7e-05     0.076      60     187 ..     233     370 ..     212     377 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.7e-05
         DLH  60 aeaaraldelvskvaeekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaev.pevdaavafYG........lspekeleeaakika...p 146
                 +e+++++  l ++ a++++++d+   +++  +v+ ++ +  ++ G   GG  al++  +  + +   + f G          +e +l++ + i++    
  CTQ26157.1 233 QERRKTFYPLNAQAADKELMQDIIPLIDARFNVR-KDADGRALAGLSQGGYQALVSGMNHlESFGWLATFSGvttttvpnAGVEAQLKQPDAINKqlrN 330
                 6677777777777777777777766666666666.5556667888888888888777666688888888888888888874555555555555541114 PP

         DLH 147 ilalfgeeDefipadevekleealkaanvdlelkvYpgagH 187
                   +++ge+D +  +d +  l+++l++++++++ + Ypg  H
  CTQ26157.1 331 FTVVVGEKDSVTGKD-IAGLKSELEKQQIKFDYHQYPGLNH 370
                 567899999877777.9*********************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2904.38
//
Query:       CTQ26158.1  [L=544]
Description: carbohydrate-specific outer membrane porin, cryptic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-82  276.3  20.6    8.4e-82  276.1  20.6    1.1  1  LamB          LamB porin
    5.2e-13   48.7   2.2    8.5e-13   48.0   2.2    1.4  1  Sugarporin_N  Maltoporin periplasmic N-terminal extension


Domain annotation for each model (and alignments):
>> LamB  LamB porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.1  20.6   9.4e-86   8.4e-82       1     379 []     127     544 .]     127     544 .] 0.92

  Alignments for each domain:
  == domain 1  score: 276.1 bits;  conditional E-value: 9.4e-86
                 EEEEEEEEEEEETTSS.B------TT-S----TT---SEEEEEEEEEEEEEETTEEEEEEEEEEEEE-.................-EEEEEEEEEET-S CS
        LamB   1 FhGYaRsGvgvssegg.eqkcfqaggagskyRLGnEcdtyaElklgkelekedgkkfkvdvmlayssd.....elkndstadesdlalrqayveaknll 93 
                 ++GY+RsG+g+ s+g+ +++++ + g     RLGnE   +++l+l++++ +e++k++++ vml+ +        +  d++  e+ ++++++yv++k++l
  CTQ26158.1 127 YNGYFRSGWGTASHGSpKSWAIGSLG-----RLGNEYSGWFDLQLKQRVFQEGDKRVDAIVMLDGNVGqqystGWFGDNAGGENYIQFSDMYVNTKGFL 220
                 89**********99996666777777.....******************999999999999999777687777667777777777************** PP

                 TTSTT-EEEEEEE--S-EEEGGGTEEEE---.EEEEEEEEEE-SSSEEEEEEEEEEEEEEEEC....EEEEEEEEEEEEEEEECCTTEEEEEEEEEEEE CS
        LamB  94 eflpeatlWaGkrfyrrndihilDfyywdls.GtGaGiedidlgdgklslalvrsdesddsssk...kevsnnaldlrltgiklndggklelgldyara 188
                 +f++ea +W+Gk+   + +i++lD++   ++ + G+G+e++++g gk+++al+r+d +d + s    ++ ++n+ld+r+++i+l+d+++l++  +y++a
  CTQ26158.1 221 PFAQEADFWVGKHGAPKIEIQMLDWKTQRTDaAAGVGLENWQVGAGKFDIALIREDVDDYDRSLsnkQQINTNTLDVRYKDIPLWDKASLMVSGRYVAA 319
                 ****************************999899************************999888999******************************** PP

                 E--T.........-TT---EEEEEEEEEEEEETT.EEEEEEEEEEECCCTT-SS---TTE----...........EEEEEEEEEEEEEETTTEEEEEEE CS
        LamB 189 nksd.........akkaakdgvmltlehtqsflg.gfnklalqygtglgaenkgggsggelnna.ae......kdakslrlleqgvvqlsdkfslayav 270
                 n+s+          ++  kd +m+  + tq+f + +fn++++  +++++a++ ++++g++ +++ ++       +++++rl++qg+++l d++ +a a+
  CTQ26158.1 320 NQSSsekykegneGYYPWKDTWMAGTSLTQKFANgSFNEFSFLLANNSIASSFSRYAGSSPYTTfNGryygdhTNGTAVRLTSQGETYLRDDVIMANAI 418
                 ***99******99999**************998889***********************9999988889988777************************ PP

                 EEEEEEE......TTS--EEEEEEEEEEEEECCTTEEEEEEEEEEEEEE..........EEEEEEEEEEEES.SSSTT-SSEEEEEEEEEE.EEESEEE CS
        LamB 271 vyqksddry....dngddkkwlsagvRpvykltdnfklllElgydrvkk.........gnlyKlTlaptlka.gsgfwsRPelRlfatyak.wneaakd 354
                 vy   +d y     +++d +++++++Rp+y +++++++ +Elgy+++++         ++ yK+Tl +t+k+ +s + sRPe+R++aty+k  + ++++
  CTQ26158.1 419 VYSFGNDVYsyetGAHSDFESIRTVLRPAYIWDKYNQTGVELGYFKQQNkdvtgkkynESGYKTTLFHTFKVnTSMLTSRPEIRFYATYIKaKDIDLDK 517
                 *******99999999*********************************55566656657*************999999*************64444444 PP

                 ..TGGGSB-SS-EEEEEEEEEEEEEEE CS
        LamB 355 ..alskagakkgdtseltfGvqaEaWW 379
                   ++ ++ +++g+++++ +G+qaE+WW
  CTQ26158.1 518 aaNNTTSIFEDGKNDQFAVGAQAEIWW 544
                 6545667788999************** PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   2.2   9.5e-17   8.5e-13       1      55 []       2      57 ..       2      57 .. 0.98

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 9.5e-17
  Sugarporin_N  1 Mkkktlalaialllstaasv.aaaasltiEaRLaaLEkrLqeAeqraqaAearake 55
                  M+k+ +a+ai ll+++  s    a++lt+E+RL++LEk+L++++ +++++++++++
    CTQ26158.1  2 MRKNRIASAIVLLAPLCYSTnLLASQLTVEQRLELLEKALKDTQKELKKYQDQERK 57
                  9******************99********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 4294.85
//
Query:       CTQ26159.1  [L=241]
Description: negative regulator of PhoR/PhoB two-component regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-39  134.3   9.2    3.1e-21   75.6   2.0    2.1  2  PhoU         PhoU domain
  ------ inclusion threshold ------
      0.053   13.5   0.1      0.096   12.6   0.1    1.5  1  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> PhoU  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   2.0   3.5e-25   3.1e-21       3      87 ..      27     111 ..      25     113 .. 0.97
   2 !   63.3   0.8   2.4e-21   2.1e-17       1      89 []     128     213 ..     128     213 .. 0.94

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 3.5e-25
                 HHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PhoU   3 rmaeiveemlddalealeekdtelarevierddeidrlekeiersllealakrqplaedlrellsllriardlERigDhavniae 87 
                  m+ +ve++l+da++a  ++d +la++vi+ d++++ +e +i++++++++akrqp a+dlr ++++++ + +lERigD a +i++
  CTQ26159.1  27 TMGGLVEQQLSDAITAMHNQDSDLAKRVIDGDKQVNMMEVAIDEACVRIIAKRQPTASDLRLVMAIIKTIAELERIGDVADKICR 111
                 7**********************************************************************************98 PP

  == domain 2  score: 63.3 bits;  conditional E-value: 2.4e-21
                 HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PhoU   1 lrrmaeiveemlddalealeekdtelarevierddeidrlekeiersllealakrqplaedlrellsllriardlERigDhavniaerv 89 
                 l+++++ + +ml+d+l+a+++ d + a +++++d+++d+ ++ i r+l++ +++++     +  +l++l  ar++ERigD + ni+e++
  CTQ26159.1 128 LESLGRHTVQMLHDVLDAFARMDLDEAVRIYREDKKVDQEYEGIVRQLMTYMMEDSRT---IPSVLTALFCARSIERIGDRCQNICEYI 213
                 57899***********************************************987764...7899*********************985 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.1e-05     0.096      22      56 ..      48      88 ..      31     122 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
  HATPase_c_2 22 aglseelld......eirlaveEactNavehayleapegpv 56
                 ++l+++++d       +++a++Eac++++   ++ a++ ++
   CTQ26159.1 48 SDLAKRVIDgdkqvnMMEVAIDEACVRIIAKRQPTASDLRL 88
                 4444444444444449*************999888776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      652  (0.0363657); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2084.54
//
Query:       CTQ26160.1  [L=257]
Description: phosphate transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-34  119.9   0.0    1.6e-34  119.4   0.0    1.2  1  ABC_tran      ABC transporter
    2.6e-10   40.6   0.1    7.9e-05   22.6   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.8e-07   30.9   0.0    8.7e-07   28.6   0.0    1.9  1  SMC_N         RecF/RecN/SMC N terminal domain
    2.9e-06   27.3   0.0    2.9e-06   27.3   0.0    1.2  1  AAA_15        AAA ATPase domain
      5e-05   23.6   0.0    0.00014   22.1   0.0    1.9  1  AAA_22        AAA domain
    9.8e-05   22.0   0.0    0.00019   21.1   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
    0.00012   22.1   0.0    0.00027   20.9   0.0    1.6  1  RsgA_GTPase   RsgA GTPase
    0.00015   22.2   0.0    0.00029   21.3   0.0    1.6  1  AAA_16        AAA ATPase domain
    0.00031   21.3   1.1    0.00041   20.9   1.1    1.5  1  AAA_23        AAA domain
    0.00054   19.9   0.0    0.00086   19.3   0.0    1.2  1  Rad17         Rad17 P-loop domain
     0.0057   16.4   0.0      0.019   14.7   0.0    1.9  3  PRK           Phosphoribulokinase / Uridine kinase family
     0.0097   15.6   0.0       0.18   11.5   0.0    2.1  2  AAA_30        AAA domain
  ------ inclusion threshold ------
       0.03   14.5   0.0      0.078   13.1   0.0    1.6  1  AAA_33        AAA domain
      0.052   12.7   0.0      0.054   12.6   0.0    1.1  1  G-alpha       G-protein alpha subunit
      0.053   13.2   0.1       0.11   12.2   0.0    1.6  2  AAA_24        AAA domain
      0.071   12.6   0.0       0.24   10.8   0.0    1.9  1  PhoH          PhoH-like protein
      0.079   12.7   0.1        1.9    8.2   0.0    2.7  3  IstB_IS21     IstB-like ATP binding protein
      0.091   12.7   0.0       0.36   10.7   0.0    1.8  2  ATPase_2      ATPase domain predominantly from Archaea
        0.1   13.0   0.0       0.24   11.8   0.0    1.8  1  RNA_helicase  RNA helicase
       0.11   11.2   0.0       0.37    9.5   0.0    1.7  2  Adeno_IVa2    Adenovirus IVa2 protein
       0.11   11.9   0.0       0.44    9.9   0.0    1.8  2  TniB          Bacterial TniB protein
       0.12   12.4   0.0        0.3   11.1   0.0    1.7  1  AAA_5         AAA domain (dynein-related subfamily)
       0.14   12.4   0.0       0.29   11.4   0.0    1.5  1  AAA_28        AAA domain
       0.15   12.6   0.0       0.29   11.7   0.0    1.6  1  AAA_18        AAA domain
       0.15   12.0   0.0       0.32   10.9   0.0    1.5  1  APS_kinase    Adenylylsulphate kinase
       0.17   11.5   0.0       0.65    9.5   0.0    1.8  2  AAA_25        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.0   2.3e-37   1.6e-34       1     136 [.      26     181 ..      26     182 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 2.3e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.....SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx............. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp.....teGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren............. 79 
                 lkn++l++ +++++a++G++G+GKStLl+++ ++ +      +eGeilldg+++ +  q++  lr+++g+++q+p+ fp + +++n             
  CTQ26160.1  26 LKNINLDITKNQVTAFIGPSGCGKSTLLRTFNKMFELypeqrAEGEILLDGDNILTntQDIALLRAKVGMVFQKPTPFPMS-IYDNiafgvrlfeklsr 123
                 79******************************99877778889*******99999989***********************.9**************** PP

                 .HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  ++de+++ al+k  l + +++++++s++sLSgGq+qr+++ar ++ +p++lllDEp+
  CTQ26160.1 124 aDMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPC 181
                 *9*******************************************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.7e-06     0.006       1      24 [.      38      61 ..      38      92 .. 0.77
   2 !   22.6   0.0   1.1e-07   7.9e-05     225     298 ..     142     211 ..      66     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.7e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                ++++iGp g+GKS+LL+++  ++ 
  CTQ26160.1 38 VTAFIGPSGCGKSTLLRTFNKMFE 61
                699**************9976655 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 1.1e-07
      AAA_21 225 engdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 e +d    + ++lS G+++ l+++  ++ ++    +ll+DEp + L+P  + r+ el+ el++ +  v+++TH+
  CTQ26160.1 142 ETKDKLHQSGYSLSGGQQQRLCIARGIAIRP---EVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHN 211
                 5555555555788899988888888888888...9*************888888888888877.899******8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.3e-09   8.7e-07      13     206 ..      26     219 ..      16     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.3e-09
                 EECEEEEEET.TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCC...CCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTS CS
                 xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  13 yagktvilpf.sksftaivGpNGSGKsnlldAilFvLGersakklrsekl...sdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkg 107
                 +  k++ l++ ++++ta +Gp G+GKs ll     ++     +    e l   ++++++  +  ++ +a+v ++f+++        +++   +r+++k 
  CTQ26160.1  26 L--KNINLDItKNQVTAFIGPSGCGKSTLLRTFNKMFELYPEQRAEGEILldgDNILTN-TQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKL 121
                 4..344555414579****************9987777666655555544222567776.89999************9998555566666666665554 PP

                 E.....EEEEETTEEE-H.HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHH CS
                 x.....xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 108 e.....seykingkevtk.kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislree 200
                 +      +++   +++   +e ++ l+++g    +LSgG+++ + +a  +Ai+   p+ + llDe  +aLD   + ++ el+ e +++  +++++++ +
  CTQ26160.1 122 SradmdERVQWALTKAALwNETKDKLHQSGY---SLSGGQQQRLCIARGIAIR---PE-VLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQ 213
                 4111122233332333333666666666665...6*******99999998884...55.5699*********************************998 PP

                 HCCC-S CS
                 xxxxxx RF
       SMC_N 201 mlekad 206
                 + ++++
  CTQ26160.1 214 QAARCS 219
                 887764 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   4.1e-09   2.9e-06      11      83 ..      23      97 ..      10     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 4.1e-09
      AAA_15 11 FRslkdveidlsee.ltvliGkNnsGKSsilealdlFlnnkekkn..kkvikiekedleifeniseskdikIdvef 83
                F +lk++ +d+ ++ +t +iG+ ++GKS++l+ ++++++   + +  + +i ++ +++ ++ ++    + k+ + f
  CTQ26160.1 23 FHALKNINLDITKNqVTAFIGPSGCGKSTLLRTFNKMFELY-PEQraEGEILLDGDNILTNTQDIALLRAKVGMVF 97
                7899********999***********************955.2224655555555555555555555555555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.1e-07   0.00014       5      38 ..      36      84 ..      32     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.1e-07
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee...............e 38
                 ++++ +G+sG+GK+tllr++ + ++ +++++                +
  CTQ26160.1 36 NQVTAFIGPSGCGKSTLLRTFNKMFELYPEQRAegeilldgdniltntQ 84
                678999*******************998888775555555544444431 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.8e-07   0.00019      10      39 ..      21      53 ..      15      69 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.8e-07
      AAA_29 10 gtfdg.htieidlkg..atlltGpsGsGKSTll 39
                g f+  + i++d     +t ++GpsG GKSTll
  CTQ26160.1 21 GKFHAlKNINLDITKnqVTAFIGPSGCGKSTLL 53
                66777777777665556***************9 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.9e-07   0.00027      90     121 ..      26      58 ..      10      75 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.9e-07
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallp 121
                  l++++  +++ ++++++G+SG GKStL+ +++ 
   CTQ26160.1  26 LKNINLDITKnQVTAFIGPSGCGKSTLLRTFNK 58 
                  55565555555*****************98765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   4.1e-07   0.00029      25     147 ..      37     215 ..      23     240 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.1e-07
      AAA_16  25 elvllsGesGvGKsslvrellr.....alekd..........................ggiflrgkcdqlesaipysalaqalareellrqlldeaesa 92 
                 +++ ++G+sG+GKs+l+r++ +     +   +                          ++  + +k + +    p+s++ ++++  +l+++l +++ + 
  CTQ26160.1  37 QVTAFIGPSGCGKSTLLRTFNKmfelyP---EqraegeilldgdniltntqdiallraKVGMVFQKPTPF----PMSIYDNIAFGVRLFEKLSRADMD- 127
                 567899***********99998774430...246677688888777777776666644444466666666....667777777788999999988444. PP

      AAA_16  93 eleawrekleeala........................................avpelagaeasrllellkrllallsrderplvlvlDdlqwa 147
                 e+ +w+   ++a+                                         ++++l++ +  r+ el+++l     + + ++v+v  ++q+a
  CTQ26160.1 128 ERVQWAL--TKAALwnetkdklhqsgyslsggqqqrlciargiairpevllldePCSALDPISTGRIEELITELK----Q-DYTVVIVTHNMQQA 215
                 4444443..333334466666666666777777777777777777777777777666666666655555555555....3.33366666666655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   1.1     6e-07   0.00041       2      38 ..      11      55 ..      10     160 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6e-07
      AAA_23  2 Lkienfrsf.......rdqeidF...skgltlItGpNGaGKTTildA 38
                ++++n++ +       ++  i++   ++ +t+++Gp G+GK+T+l+ 
  CTQ26160.1 11 ISVRNLNFYygkfhalKN--INLditKNQVTAFIGPSGCGKSTLLRT 55
                666666666544443344..55566888****************985 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.3e-06   0.00086      34      87 ..      25      78 ..      23      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.3e-06
       Rad17 34 wlkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdn 87
                +lk   L+  k+++    GPsGCgkst ++   k +    ++   +  l + dn
  CTQ26160.1 25 ALKNINLDITKNQVTAFIGPSGCGKSTLLRTFNKMFELYPEQRAEGEILLDGDN 78
                6778889999999*********************98877777766666666666 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.8e-05     0.019       4      32 ..      41      69 ..      38      92 .. 0.76
   2 ?   -2.6   0.0       5.4   3.7e+03     132     155 ..     105     129 ..     104     131 .. 0.84
   3 ?   -3.2   0.0       8.3   5.8e+03      75      98 ..     193     216 ..     188     230 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.8e-05
         PRK  4 vagsSGaGkttvarklekifgrekvkaae 32
                  g+SG+Gk+t+ r+++k+f+    + ae
  CTQ26160.1 41 FIGPSGCGKSTLLRTFNKMFELYPEQRAE 69
                579*****************955554444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.4
         PRK 132 lkiyvdisidlelarklqR.DiaeR 155
                 ++iy  i   ++l  kl+R D+ eR
  CTQ26160.1 105 MSIYDNIAFGVRLFEKLSRaDMDER 129
                 6788888899999999999888887 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 8.3
         PRK  75 yevlkelkegkkvdkpiYshetee 98 
                 +e + elk+  +v + + + +++ 
  CTQ26160.1 193 EELITELKQDYTVVIVTHNMQQAA 216
                 455555555555554444444444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00026      0.18      17      43 ..      35      61 ..      28      72 .. 0.86
   2 ?    2.0   0.0      0.21   1.5e+02      89     129 ..     171     215 ..     124     224 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00026
      AAA_30 17 gdrvavltGpAGtGKttalkalreawe 43
                +++v++  Gp G GK+t+l++ ++++e
  CTQ26160.1 35 KNQVTAFIGPSGCGKSTLLRTFNKMFE 61
                4569****************9999876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.21
      AAA_30  89 g.tllivDEagmv....dtkqlaallkaaekagakvilvGDerQla 129
                 + ++l+ DE   +    +t  +++l++++++ + +v++v  + Q a
  CTQ26160.1 171 RpEVLLLDEPCSAldpiSTGRIEELITELKQ-DYTVVIVTHNMQQA 215
                 3478888887766677789999999999998.77777777777765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00011     0.078       1      19 [.      38      56 ..      38      92 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                ++ ++G++G+GKstl++  
  CTQ26160.1 38 VTAFIGPSGCGKSTLLRTF 56
                5689***********9975 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.8e-05     0.054      27      80 ..      40      92 ..      25     253 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.8e-05
                EEEESTTSSHHHHHHHHHHHCS----HHHHHC.CHHHHHHHHHHHHHHHHHHHHH CS
     G-alpha 27 lllGqseSGKsTilkqlkllykkgfseeelat.wraviqlnivrsiktileales 80
                 ++G s++GKsT+l+ + +++  +   e++a+    +   ni+++ ++i     +
  CTQ26160.1 40 AFIGPSGCGKSTLLRTFNKMF--ELYPEQRAEgEILLDGDNILTNTQDIALLRAK 92
                589***************999..33444454445566677888888887766666 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00016      0.11       2      29 ..      36      62 ..      35      99 .. 0.82
   2 ?   -3.0   0.0       7.4   5.1e+03     118     133 ..     196     213 ..     190     222 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00016
      AAA_24  2 klkiliyGpsgiGKTtlakelgpkplfi 29
                ++  + +Gpsg GK+tl++++ +k + +
  CTQ26160.1 36 NQVTAFIGPSGCGKSTLLRTF-NKMFEL 62
                5667889**************.877766 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.4
      AAA_24 118 lqelrk..nvifiahekt 133
                 ++el++  +v+++ h  +
  CTQ26160.1 196 ITELKQdyTVVIVTHNMQ 213
                 455555567777777665 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00035      0.24      16      49 ..      33      68 ..      23     234 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
                HHH-SEEEEE--TTSSTTHH..HHHHHHHHHHTTS- CS
        PhoH 16 lkkndivfaiGpaGtGKtyl..avalavealkkkkv 49
                ++kn+++  iGp+G+GK+ l  +    +e++ +++ 
  CTQ26160.1 33 ITKNQVTAFIGPSGCGKSTLlrTFNKMFELYPEQRA 68
                669**************8772333444555555555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0028       1.9      44      64 ..      33      53 ..      22      59 .. 0.84
   2 ?   -0.5   0.0       1.3   8.9e+02      85     105 ..     116     136 ..     113     141 .. 0.87
   3 ?    0.1   0.0      0.84   5.8e+02     106     150 ..     169     213 ..     155     219 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0028
   IstB_IS21 44 iekkenivllGpsGvGKshla 64
                i+k++  +++GpsG GKs l 
  CTQ26160.1 33 ITKNQVTAFIGPSGCGKSTLL 53
                7899999***********885 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.3
   IstB_IS21  85 dLveelkrarrdgklaralkr 105
                 +L+e+l+ra+ d++++ al++
  CTQ26160.1 116 RLFEKLSRADMDERVQWALTK 136
                 79************9998876 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.84
   IstB_IS21 106 llkvdllilDd..lgllpldqaeaellfeviekryerrsiiitsnlp 150
                  +++++l+lD+   +l p++    e+l   +++ y  + +i+t n++
  CTQ26160.1 169 AIRPEVLLLDEpcSALDPISTGRIEELITELKQDY--TVVIVTHNMQ 213
                 57889999999333566666666666665555555..4567777765 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00052      0.36      19      42 ..      35      58 ..      24      67 .. 0.77
   2 ?   -1.6   0.0         3   2.1e+03     106     148 ..     192     233 ..     181     238 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00052
    ATPase_2 19 pneiyfiYGpegsGKtaLlkeiie 42
                +n++    Gp g+GK++Ll+ + +
  CTQ26160.1 35 KNQVTAFIGPSGCGKSTLLRTFNK 58
                46666677************9855 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3
    ATPase_2 106 ielllekikkkgkkiiiiiDelqklidlglngaellvkeLlnl 148
                 ie+l+ ++k++ + ++i+   +q++       a  ++ eL+++
  CTQ26160.1 192 IEELITELKQDYT-VVIVTHNMQQAARCSDHTAFMYLGELIEF 233
                 5556666666644.88888888888866655666666666655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00035      0.24       3      23 ..      41      61 ..      39     106 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00035
  RNA_helicase  3 lyGpsgeGKStlakeLakall 23
                  + Gpsg+GKStl +++ k ++
    CTQ26160.1 41 FIGPSGCGKSTLLRTFNKMFE 61
                  78***********99776665 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00054      0.37      85     117 ..      35      64 ..      14      67 .. 0.72
   2 ?   -1.4   0.0       1.1   7.7e+02     235     248 ..     202     215 ..     195     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00054
  Adeno_IVa2  85 lqPviGviyGPtGsGksqllrnlissklisPiP 117
                 ++ v     GP G+Gks llr++  +k+ +  P
  CTQ26160.1  35 KNQV-TAFIGPSGCGKSTLLRTF--NKMFELYP 64 
                 4444.4456************86..55555555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
  Adeno_IVa2 235 gfsvlvvlhnlnPr 248
                  ++v++v hn++  
  CTQ26160.1 202 DYTVVIVTHNMQQA 215
                 6999******9865 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00064      0.44      34      66 ..      35      67 ..      20      74 .. 0.80
   2 ?   -1.0   0.0       1.4   9.6e+02     117     165 ..     169     215 ..     153     223 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00064
        TniB 34 rmpnlllvGdsnnGKtmivekFarlhppekded 66
                + +   ++G+s +GK+++++ F ++ + +++++
  CTQ26160.1 35 KNQVTAFIGPSGCGKSTLLRTFNKMFELYPEQR 67
                5567889****************9987666554 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.4
        TniB 117 elkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGteea 165
                 +++++vL++DE  ++l     +  ++ +++  L++++ + iv+   ++a
  CTQ26160.1 169 AIRPEVLLLDEPCSALD--PISTGRIEELITELKQDYTVVIVTHNMQQA 215
                 56788999999777773..344444555566666666666666665555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00043       0.3       4      23 ..      41      60 ..      39      73 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00043
                EE--SSSSHHHHHHHGGGGB CS
       AAA_5  4 LvGppGtgKselaerlaaal 23
                 +Gp+G+gKs+l + + +++
  CTQ26160.1 41 FIGPSGCGKSTLLRTFNKMF 60
                59*************99987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00042      0.29       3      21 ..      40      58 ..      38      79 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00042
      AAA_28  3 vitGgestGKTtlleaLaa 21
                +++G++++GK+tll+ +++
  CTQ26160.1 40 AFIGPSGCGKSTLLRTFNK 58
                79************98875 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00042      0.29       4      39 ..      42      80 ..      40     149 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00042
      AAA_18  4 tGtpGvGKttlakeLskrlgf...gvnlrdvakenglll 39
                 G++G+GK+tl +  +k+ ++    +  ++++ +++  l
  CTQ26160.1 42 IGPSGCGKSTLLRTFNKMFELypeQRAEGEILLDGDNIL 80
                7**************999766688444444444444433 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00046      0.32       5      43 ..      39      81 ..      35      90 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00046
                EEEESSTTSSHHHHHHHHHHHHH....HTT--EEEEEHHHHTT CS
  APS_kinase  5 vwltGlsgsGKstianalekkLv....ekgisvylLdGdnvRh 43
                  + G sg GKst+ ++++k+ +    ++    +lLdGdn+ +
  CTQ26160.1 39 TAFIGPSGCGKSTLLRTFNKMFElypeQRAEGEILLDGDNILT 81
                5688***********99998764222133356789*****976 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00094      0.65      30      50 ..      33      53 ..      23      55 .. 0.88
   2 ?   -0.9   0.0       1.5     1e+03     125     148 ..     187     208 ..     123     217 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00094
      AAA_25 30 lpagelallaGapgtGKttla 50
                + ++ +++++G++g+GK+tl+
  CTQ26160.1 33 ITKNQVTAFIGPSGCGKSTLL 53
                56899**************96 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
      AAA_25 125 lltadvdaleaaieevegvrlvvi 148
                 + t+ +++l+ ++++  ++ +v++
  CTQ26160.1 187 ISTGRIEELITELKQ--DYTVVIV 208
                 456667777777777..4555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 2129.36
//
Query:       CTQ26161.1  [L=296]
Description: phosphate transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-29  103.5  18.8    1.1e-29  103.5  18.8    2.0  2  BPD_transp_1     Binding-protein-dependent transport system i
  ------ inclusion threshold ------
       0.41   10.7   0.1       0.41   10.7   0.1    2.9  3  CrgA             Cell division protein CrgA


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   2.7     0.011     1e+02      93     167 ..      15      87 ..      12     100 .. 0.78
   2 !  103.5  18.8   1.2e-33   1.1e-29       1     175 [.     101     289 ..      97     293 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.011
  BPD_transp_1  93 srwqifrkvvlPnalppiitglilafggllggavlleflgswpG.lgtllleailgydyseisnggvlalviavll 167
                   sr+++  k +++n +  +++ + +afg+++   +l+ +++   G  g+ l  ++++ + ++++ gg la ++a   
    CTQ26161.1  15 SRRKMQAKRRMKNRIALALSMATMAFGLFWLIWILMATITR--GfDGMSLALFTEMTPPPNTA-GGGLANALAGSG 87 
                   67778888889999999999999999999999999999994..44999999999999999999.666665555443 PP

  == domain 2  score: 103.5 bits;  conditional E-value: 1.2e-33
  BPD_transp_1   1 gillGilaa.lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   gil+Gi++a + r+++l +++r++ ++lls Ps+v++++++ + v+ +  +++ ++++i+l+l ++p+v+++++++l+ +p++l+eaa+alG ++w+
    CTQ26161.1 101 GILAGIYLAeYGRKSVLAEIIRFINDILLSAPSIVVGLFVYTI-VVAQMQHFSGWAGVIALALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWK 196
                   788888888*****************************98865.666778889999***************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..................nggvlalviavlllnlvadil 175
                   ++  ++l+++++ i+tg++la++++ g+++ l+f++    l+++++++ +++++++                    ++gvl+++++vllln++a+++
    CTQ26161.1 197 MISAITLKASVSGIMTGILLAIARIAGETAPLLFTA----LSNQFWSTDMMQPIANLPvtifkfamspfaewqqlaWAGVLIITLCVLLLNILARVI 289
                   ************************************....***************999**************9999999999999999999999887 PP

>> CrgA  Cell division protein CrgA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   4.6e-05      0.41      15      53 ..      11      49 ..       3      68 .. 0.75
   2 ?   -0.3   0.4      0.12   1.1e+03      51      83 ..     140     169 ..     123     172 .. 0.67
   3 ?   -1.7   0.4      0.35   3.2e+03      31      52 ..     262     283 ..     252     290 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.6e-05
        CrgA 15 k.aaertpvkakaakpsprwyvpvmlglmllGllwlvvyY 53
                + a++r++ + +++++++r+  ++ ++ m +Gl+wl+   
  CTQ26161.1 11 ElAESRRKMQ-AKRRMKNRIALALSMATMAFGLFWLIWIL 49
                3344444444.4588999999999***********99655 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.12
        CrgA  51 vyYlageeipfmaelgawNlliGfgliivGllm 83 
                 vy +    +  m+++  w  +i+++l+ v +++
  CTQ26161.1 140 VYTIV---VAQMQHFSGWAGVIALALLQVPIVI 169
                 33333...3456688888888888888776665 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.35
        CrgA  31 prwyvpvmlglmllGllwlvvy 52 
                  +w +    g++++ l  l+++
  CTQ26161.1 262 AEWQQLAWAGVLIITLCVLLLN 283
                 4555555566666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       882  (0.049194); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 2486.95
//
Query:       CTQ26162.1  [L=319]
Description: phosphate transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-16   60.1  21.9    2.3e-16   60.1  21.9    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.061   13.8   0.2      0.061   13.8   0.2    2.6  3  DUF1158       Protein of unknown function (DUF1158)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   8.0     0.051   4.5e+02     106     169 ..      18      89 ..      17      99 .. 0.73
   2 !   60.1  21.9   2.6e-20   2.3e-16       3     175 ..      95     304 ..      90     314 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.051
  BPD_transp_1 106 alppiitglilafggllggavlleflgswpG...lgtllleailgydyseis.....nggvlalviavllln 169
                   +++ ++ +++l + ++lgg ++ +++ swp    +g  +l + ++   +ei      + g+l++ ++ ll+ 
    CTQ26162.1  18 IFSALVKLAALIVLLMLGGIIVSLIISSWPSiqkFGFAFLWTKEWDAPNEIFgalvpIYGTLVTSFIALLIA 89 
                   567788889999999999999999999**9988888888888888888888866655444444444444444 PP

  == domain 2  score: 60.1 bits;  conditional E-value: 2.6e-20
  BPD_transp_1   3 llGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.........................vilsilghlilpviillllsaapyvrlirra 74 
                   ++++++   +  +l++ l + i++l ++Ps+v ++  +++f                         +   ++g +il++ ++l+++++py+  ++r+
    CTQ26162.1  95 GIALFLTELSPAWLKRPLGIAIELLAAIPSIVYGMWGLFIFaplfatyfqdpvgnvlstipfvgalFAGPAFGIGILAAGVILAIMIIPYIAAVMRD 191
                   566777778889********************77777777777788899***************997777999************************ PP

  BPD_transp_1  75 alrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis...............ng 156
                   ++++ p + +e a+  G+++w++++++vlP ++  +i g++l +g++lg+++++ f++   G +++l +++l+++ ++i+               ++
    CTQ26162.1 192 VFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFII---GNTYQLDSISLYMPGNSITsalanefaeaetglhVA 285
                   **********************************************************...77899999999999999999999******9999955 PP

  BPD_transp_1 157 gvlalviavlllnlvadil 175
                   ++  l+++++++++++ + 
    CTQ26162.1 286 ALMELGLILFVITFIVLAA 304
                   5555555555555555444 PP

>> DUF1158  Protein of unknown function (DUF1158)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.4       0.7   6.3e+03       8      14 ..      31      37 ..      17      58 .. 0.55
   2 ?   -3.1   0.3       1.3   1.1e+04      13      32 ..      77      96 ..      70     104 .. 0.53
   3 ?   13.8   0.2   6.8e-06     0.061      22      72 ..     259     312 ..     244     315 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.7
     DUF1158  8 llsaagi 14
                ll+ +gi
  CTQ26162.1 31 LLMLGGI 37
                2222222 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
     DUF1158 13 gilllallsalllpapalsl 32
                g l+ ++++ l+    ++++
  CTQ26162.1 77 GTLVTSFIALLIAVPVSFGI 96
                55555555433333334444 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 6.8e-06
     DUF1158  22 alllpapalslalakklvtt...fhlldlnqlytlvfclwflllgaveylvirf 72 
                 +l +p  +++ ala+++ +    +h+  l +l  ++f + f++l a +++++r 
  CTQ26162.1 259 SLYMPGNSITSALANEFAEAetgLHVAALMELGLILFVITFIVLAASKFMIMRL 312
                 68899999999***9886533339***************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       851  (0.047465); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 2636.11
//
Query:       CTQ26163.1  [L=346]
Description: phosphate transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-60  205.4   7.8    1.8e-60  205.0   7.8    1.1  1  PBP_like_2  PBP superfamily domain
      1e-11   44.3   0.0    2.4e-11   43.1   0.0    1.7  1  PBP_like    PBP superfamily domain
    0.00083   19.2   0.1     0.0016   18.3   0.0    1.6  1  SBP_bac_11  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.0   7.8     3e-64   1.8e-60       8     281 ..      25     308 ..      19     309 .. 0.90

  Alignments for each domain:
  == domain 1  score: 205.0 bits;  conditional E-value: 3e-64
  PBP_like_2   8 svgeifgaGsttpapalrkladafekaapgakvnyastGSgagikalrngdvdfagsdrplteseiaagwaangaggliqvpvaigaialvvnkd.... 102
                 ++++++gaG+t+pap++ k+ad+++k+ +g kvny++ GS++g k++ +++vdf++sd+pl+++++    ++    gl+q+p +ig+++l+vn +    
  CTQ26163.1  25 AAASLTGAGATFPAPVYAKWADTYQKE-TGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLADDKL----TQ---EGLFQFPTVIGGVVLAVNLPgvks 115
                 5567***********************.8***********************************77....44...45****************996777 PP

  PBP_like_2 103 nplnlsreaLakIfsgkItnWnd........vlglpadgpIkvvhrsdgsgttflfstalaeq...............gpwtasgigasgsegvasav. 177
                 ++l l+ ++L +I+ gkI++W+d        +l+lp  ++I vv+r dgsgt f+f+++l+++               +p++   +g +g++g+a  v 
  CTQ26163.1 116 GELVLDGKTLGDIYLGKIKKWDDeaiaklnpGLKLP-SQNIAVVRRADGSGTSFVFTSYLSKVneewkskigagstvnWPTG---LGGKGNDGIAAFVq 210
                 7777******************************99.************************999998888888888766655...77777888888884 PP

  PBP_like_2 178 snngaigyvsvaywlavkgysladvtngagkfvlptaataasalkvakias.nplawslqpveeniadgayPlsrftyiivyqpyayhgnnaalakaFl 275
                 + +g igyv++ay++++ +++ +++  ++gk v+pt+ ++a+a+k +++++ +      q + ++ ++ a+P++ +t+i+v++++ +++++ a++ +F+
  CTQ26163.1 211 RLPGSIGYVEYAYAKQN-NLAYTKLVSADGKPVSPTEDNFANAAKGVDWSKsF-----AQDLTNQKGENAWPITSTTFILVHKAT-NKPEQTAEVLKFF 302
                 55***************.*******************************8854.....455667899****************65.44799******** PP

  PBP_like_2 276 dyllsd 281
                 d+++ +
  CTQ26163.1 303 DWAYKN 308
                 ***975 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0     4e-15   2.4e-11       4     168 ..      48     236 ..      45     302 .. 0.74

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 4e-15
                 HHHH-TTCEEEEEES-HHHHHHHHHTTS-SEEEESS---CCCH.....HCCCCCEEEEEEEEEEEE-CC-HCHCCCCHCCHHH......S--BGGGC.. CS
    PBP_like   4 laeknpgvrvavanvGsggGlkalrageadiagshlldketee.....ynapalrkaldgievvlvnlarreqglvvakgnpk......kitnwkdl.. 89 
                 +++ + g +v+++++Gs+gG+k++ a+++d ++s+ +  +++       ++p++   + g  v  vnl   + g +v  g+ +      ki++w d   
  CTQ26163.1  48 YQK-ETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLADDKLtqeglFQFPTV---IGG-VVLAVNLPGVKSGELVLDGKTLgdiylgKIKKWDDEai 141
                 555.699*****************************966544322222444433...455.6888***************9996666665777766444 PP

                 .........-S-B-EEEEE-TTSHHHHHHHHHHC-CEECT..........E-SSTTSEEESSHHHHHCCHCCETTCCECCCGG-HCCCCCCECTTCE- CS
    PBP_like  90 .........adaplrlvnRetGSGtrdlfdellkkegisk..........ssikgyaqearshlavaaaVaagradvgvgieavaeelkgldfvplae 168
                          +++++ +v R+ GSGt  +f++ l+k + +           + ++  +   + ++ +aa V++ ++ +g+   a a++ ++l +++l  
  CTQ26163.1 142 aklnpglklPSQNIAVVRRADGSGTSFVFTSYLSKVNEEWkskigagstvNWPT--GLGGKGNDGIAAFVQRLPGSIGYVEYAYAKQ-NNLAYTKLVS 236
                 55455555588**********************997444355555554432222..2345677778************999999987.8999999876 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.6e-07    0.0016       6      90 ..      34     119 ..      29     235 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.6e-07
                 -SSTHHHHHHHHHHHHHHH---EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGGGG-EEEEEEEEEEEESTT-......T CS
  SBP_bac_11   6 agslaaalrelaaaFeahtgvkvevsaggsgklarqiadgarpDvwipassawlellaaaglvqaesavplassplviavpkgn......p 90 
                 a+  a++++  a+ ++++tg kv++++ gs+  ++qi+++  +D  +++ + + ++l ++gl q     p ++  +v+av+ +        
  CTQ26163.1  34 ATFPAPVYAKWADTYQKETGNKVNYQGIGSSGGVKQIIAN-TVDFGASDAPLADDKLTQEGLFQ----FPTVIGGVVLAVNLPGvksgelV 119
                 555689999****************************999.89********999**********....77778888888887764444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2685.60
//
Query:       CTQ26164.1  [L=609]
Description: L-glutamine:D-fructose-6-phosphate aminotransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-65  217.6   0.2    3.6e-33  114.2   0.2    2.3  2  SIS       SIS domain
    4.2e-21   75.5   0.1    7.6e-21   74.7   0.1    1.4  1  GATase_6  Glutamine amidotransferase domain
      1e-14   54.5   0.0      2e-14   53.6   0.0    1.5  1  GATase_7  Glutamine amidotransferase domain
    3.1e-07   29.6   0.1    5.2e-06   25.6   0.1    2.2  2  GATase_4  Glutamine amidotransferases class-II


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.2     8e-37   3.6e-33       1     130 [.     289     418 ..     289     419 .. 0.97
   2 !  101.5   0.0     7e-33   3.1e-29       2     130 ..     462     591 ..     461     592 .. 0.97

  Alignments for each domain:
  == domain 1  score: 114.2 bits;  conditional E-value: 8e-37
                 HHCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTT.SEEEEEESSTTSHHHHHS CS
         SIS   1 lLakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakerg.akiiaITdskgsplarea 98 
                 +La+ ++i ++++Gtsy++++ +++++e ++g++++ve ase++++ ++ ++++ l+i +s+sget+d++aa++l ke g    +aI++ +gs+l+re+
  CTQ26164.1 289 MLAQVEHIQIVACGTSYNSGMVSRYWFEALAGVPCDVEIASEFRYR-KSAVRRNSLMITLSQSGETADTLAALRLSKELGyLGSLAICNVPGSSLVRES 386
                 6999******************************************.*********************************6667*************** PP

                 SEEEEEEEECHCSSSHCHHHHHHHHHHHHHHH CS
         SIS  99 dlalyinaepetlvastksltaqlaaldalav 130
                 dlal++ a+ e++vastk++t+ql++l +l++
  CTQ26164.1 387 DLALMTKAGTEIGVASTKAFTTQLTVLLMLVA 418
                 *****************************986 PP

  == domain 2  score: 101.5 bits;  conditional E-value: 7e-33
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHH.HHHHTTSEEEEEESSTTSHHHHHSS CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaae.lakergakiiaITdskgsplaread 99 
                 ++++++ ++lG+G +y+ia+e+alkl+ei++i++e+++a+elkhg+lalid +++vi++++++e  ++++++  ++++rg+++ +++d ++     ++ 
  CTQ26164.1 462 FSDKHHALFLGRGDQYPIAMEGALKLKEISYIHAEAYAAGELKHGPLALIDAEMPVIVVAPNNELLEKLKSNIeEVRARGGELYVFADGEAGFNGSDNM 560
                 57999*****************************************************************9999************************9 PP

                 EEEEEEEECHCSSSHCHHHHHHHHHHHHHHH CS
         SIS 100 lalyinaepetlvastksltaqlaaldalav 130
                 ++++++ ++et++++++++++ql+a++++++
  CTQ26164.1 561 HIIEMPHVEETIAPIFYTVPLQLLAYHVALI 591
                 99****99999****************9987 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.1   1.7e-24   7.6e-21       9     123 ..      58     182 ..      43     193 .. 0.81

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 1.7e-24
    GATase_6   9 lvede.....valaHvRlaivglaeeegaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllall....eelG...eevle...rl 92 
                 +ve++     +++aH+R+a++g++ e+ a+P    ++++++vhNG i+n++ lr+ l++ +g+ f +++Dtev+++l+    e+ G   e+vl+   +l
  CTQ26164.1  58 AVEEQplhggTGIAHTRWATHGEPSESNAHPH--VSEHIVVVHNGIIENHEPLRALLQS-RGYVFVTETDTEVIAHLVhwelEQGGtlrEAVLRaipQL 153
                 55443344449*************77777***..*************************.****************887998777799855553355** PP

    GATase_6  93 rGmfafaiwdk.rentlilardrlgvkplyya 123
                 rG++ ++i+d  +++tl  a  r g +pl+++
  CTQ26164.1 154 RGAYGTVIMDTrDPGTLLAA--RSG-SPLVIG 182
                 ***********666666655..666.777765 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   4.5e-18     2e-14       8     119 ..      81     195 ..      72     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 4.5e-18
    GATase_7   8 dseagaQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllallea.........ewgeealerlnGmfAfaiwdeeek.rlllaRDr 96 
                  se++a P v   ++++v+v+nG i N++ lr+ L+++g+ f t++Dtev+++l+++         e + +a+ +l+G +  +i+d+++  +ll+aR  
  CTQ26164.1  81 PSESNAHPHV---SEHIVVVHNGIIENHEPLRALLQSRGYVFVTETDTEVIAHLVHWeleqggtlrEAVLRAIPQLRGAYGTVIMDTRDPgTLLAARS- 175
                 5677788888...478***************************************99******999999999**************777659999998. PP

    GATase_7  97 lGikPLyygedkgdallfaSelk 119
                     PL +g   g+++ +aS   
  CTQ26164.1 176 --GSPLVIGLGMGENF-IASDQL 195
                 ..58999999987454.445444 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   1.1e-09   5.2e-06      59     134 ..      54     129 ..      48     163 .. 0.85
   2 ?    1.5   0.0     0.025   1.1e+02     151     203 ..     522     571 ..     508     587 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.1e-09
    GATase_4  59 plaelvreypiksknvvaHiRkatqGevklenthpFvRelwgrewifAHnGdlkeykpkl....egrfePvGsTDsElaf 134
                  la+ v e+p++    +aH R at+Ge +++n+hp v     ++++  HnG +++ +p +    +  +  v +TD+E++ 
  CTQ26164.1  54 MLAQAVEEQPLHGGTGIAHTRWATHGEPSESNAHPHVS----EHIVVVHNGIIENHEPLRallqSRGYVFVTETDTEVIA 129
                 57999******************************875....589********99888776777788**********985 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.025
    GATase_4 151 saeeleralaelakeiaelGvfnlllsdgralfahastrLvyilRkaPfgeae 203
                   +el + l+  ++e+ ++G   ++++dg+a f   s+++++i  ++P+ e +
  CTQ26164.1 522 PNNELLEKLKSNIEEVRARGGELYVFADGEAGFNG-SDNMHII--EMPHVEET 571
                 55677788888888888888888888888888764.4556777..67776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4386.66
//
Query:       CTQ26165.1  [L=456]
Description: fused N-acetyl glucosamine-1-phosphate uridyltransferase; glucosamine-1-phosphate acetyl transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-30  103.2  12.9    2.7e-08   33.2   0.9    5.3  5  Hexapep          Bacterial transferase hexapeptide (six repea
    1.5e-20   74.2   0.9    4.1e-20   72.8   0.9    1.8  1  NTP_transf_3     MobA-like NTP transferase domain
      2e-12   47.2   0.0    3.2e-12   46.6   0.0    1.2  1  NTP_transferase  Nucleotidyl transferase
      2e-10   40.2  21.4      2e-06   27.4   0.5    5.3  5  Hexapep_2        Hexapeptide repeat of succinyl-transferase
    9.8e-08   32.0   0.2      2e-07   31.0   0.0    1.7  2  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly
    0.00036   20.5   0.0      0.025   14.5   0.0    2.3  2  CTP_transf_3     Cytidylyltransferase
    0.00043   19.3   0.1      0.044   12.7   0.1    2.8  3  Fucokinase       L-fucokinase
  ------ inclusion threshold ------
      0.014   13.6   0.2      0.027   12.6   0.1    1.5  1  DUF4954          Domain of unknown function (DUF4954)
      0.029   13.6   0.0      0.054   12.7   0.0    1.3  1  CofC             Guanylyl transferase CofC like


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   2.4   5.5e-11   1.1e-07       3      36 .]     267     300 ..     265     300 .. 0.94
   2 !   11.5   0.0   9.9e-05       0.2      19      34 ..     300     315 ..     298     317 .. 0.80
   3 !   14.5   0.0   1.1e-05     0.022       6      34 ..     322     350 ..     317     352 .. 0.87
   4 !   17.2   0.1   1.6e-06    0.0031       2      32 ..     353     382 ..     352     385 .. 0.92
   5 !   33.2   0.9   1.4e-11   2.7e-08       2      36 .]     395     429 ..     394     429 .. 0.96

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 5.5e-11
                 EEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   3 vIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 + G +v I+ ++++ gnV++Gd+vkIgag+vi++
  CTQ26165.1 267 QHGRDVEIDTNVILEGNVVLGDRVKIGAGCVIKN 300
                 679*****************************85 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 9.9e-05
                 TEEE-TTEEEETTEEE CS
     Hexapep  19 nVkIGdnvkIgagvvi 34 
                 n +IGd++ I +++v+
  CTQ26165.1 300 NSTIGDDCEISPYSVV 315
                 7889999999999988 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 1.1e-05
                 TTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   6 snvlIgpfaviggnVkIGdnvkIgagvvi 34 
                   ++Igpfa +++++++ +++++g++v  
  CTQ26165.1 322 AACTIGPFARLRPGAELLEGAHVGNFVEM 350
                 679**********************9975 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 1.6e-06
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagv 32 
                 +++G++++ g+ +++ g+++IGdnv Igag+
  CTQ26165.1 353 ARLGKGSKAGHLTYL-GDAEIGDNVNIGAGT 382
                 57899999*******.*************97 PP

  == domain 5  score: 33.2 bits;  conditional E-value: 1.4e-11
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 t+IG++v++g+ +++ ++V++G++v+I+ag+++++
  CTQ26165.1 395 TIIGDDVFVGSDTQLVAPVTVGNGVTIAAGTTVTR 429
                 89******************************985 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.9     2e-23   4.1e-20       1     114 [.       8     124 ..       8     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 2e-23
                   EEEEEESS-TTTTT..THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSH..CHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH.SSSCEEEEE CS
  NTP_transf_3   1 aviLAGGrSsRmgg..dKallplggkpllervldalraagvdevvvvggd..eevlaalarlgvrvvededpgkgplaslaaalraaadadavlvla 93 
                   +viLA+G+++Rm +  +K l  l+gkp++++v+da++++g+  v +v g+  + +++ l + ++ +v ++ ++ g++++++ a+   +d++ +l+l 
    CTQ26165.1   8 VVILAAGKGTRMYSdlPKVLHTLAGKPMVQHVIDAANDLGACAVHLVYGHggDLLRQTLHEDNLNWVLQA-EQLGTGHAMQQAAPFFNDDEDILMLY 103
                   69**********9999***********************988999998777788999999999******8.59*************99********* PP

                   TT-TT--HHHHHHHHHCHHHH CS
  NTP_transf_3  94 cDmPlltpelverllaaaaas 114
                   +D+Pl++ e+++rl+aa  + 
    CTQ26165.1 104 GDVPLISVETLQRLRAAKPQG 124
                   ****************96544 PP

>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.6e-15   3.2e-12       3     220 ..       9     214 ..       7     220 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.6e-15
                      EEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTHHH CS
  NTP_transferase   3 vILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaael 96 
                      vILa G+GtR++    +  +k ++ l +++++q+++ ++ + g  ++ +v   +   l+++ l+e +     ++ +l+ e+ gt +A+ +aa +
       CTQ26165.1   9 VILAAGKGTRMY----SDLPKVLHTLAGKPMVQHVIDAANDLGACAVHLVYG-HGGDLLRQTLHEDN-----LNWVLQAEQLGTGHAMQQAAPF 92 
                      9**********8....5677777777777************99999666655.66777777777665.....789******************* PP

                      HTTSSE..EEEEETTEE.EESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTSBEEEEECS-SSHSH...CSEECCSEEEEETTH CS
  NTP_transferase  97 ledeksdelvlvLggDh.likdayeeavkkaiekaakgtvtfgivpveeateyGvieadeegrverfvEKPkeaka...selassGiYvfnsev 186
                      ++d+++   +l+L gD+ li+ +  + ++ a+++   g + +++v+ +++t+yG i++++ g+v+ +vE  ++ +a    + +++Gi +     
       CTQ26165.1  93 FNDDED---ILMLYGDVpLISVETLQRLRAAKPQ---GGIGLLTVKLDDPTGYGRITREN-GQVTGIVEHKDASEAqrqIQEINTGILIAGGAD 179
                      **9997...9999999835554555555555555...559999999***********988.8*******9999998777677889988887777 PP

                      HHHHHH.CCHHHTTSSCHHHHHHHHHHHTTEEEEE CS
  NTP_transferase 187 llflak.dleelkrgedeitdilpkaleegkvala 220
                      l+  ++   ++ ++ge  itdi+  a +eg++ +a
       CTQ26165.1 180 LKRWLAkLTNNNAQGEYYITDIIAMAHQEGHQIVA 214
                      77777768889999999999999999998887665 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   3.8   0.00053       1.1      17      32 ..     282     298 ..     269     300 .. 0.83
   2 !   10.7   4.7   0.00017      0.34       2      28 ..     284     311 ..     283     317 .. 0.86
   3 ?    0.0   0.0      0.37   7.3e+02       8      28 ..     324     346 ..     322     346 .. 0.80
   4 !    8.4   0.3   0.00089       1.8       4      14 ..     372     382 ..     358     386 .. 0.77
   5 !   27.4   0.5     1e-09     2e-06       2      34 .]     395     429 ..     394     429 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00053
                 S.EEE-TT-EE-TT-EE CS
   Hexapep_2  17 G.vslGdncvvgaGvvi 32 
                 G v lGd++++gaG+vi
  CTQ26165.1 282 GnVVLGDRVKIGAGCVI 298
                 6699************9 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00017
                 EEE-TT-EE-TT-EE.SEEE-TT-EE-T CS
   Hexapep_2   2 viIGdnCliGanagi.GvslGdncvvga 28 
                 v  Gd++ iGa ++i   ++Gd+c +++
  CTQ26165.1 284 VVLGDRVKIGAGCVIkNSTIGDDCEISP 311
                 78899999******99899999999976 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.37
                 -EE-TT-EE..SEEE-TT-EE-T CS
   Hexapep_2   8 CliGanagi..GvslGdncvvga 28 
                 C iG++a    G +l ++++vg+
  CTQ26165.1 324 CTIGPFARLrpGAELLEGAHVGN 346
                 99***998777888888888876 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.00089
                 E-TT-EE-TT- CS
   Hexapep_2   4 IGdnCliGana 14 
                 IGdn++iGa  
  CTQ26165.1 372 IGDNVNIGAGT 382
                 77777777765 PP

  == domain 5  score: 27.4 bits;  conditional E-value: 1e-09
                 EEE-TT-EE-TT-E.E.SEEE-TT-EE-TT-EE-S CS
   Hexapep_2   2 viIGdnCliGanag.i.GvslGdncvvgaGvvita 34 
                 +iIGd++++G++   + +v++G++++++aG ++t+
  CTQ26165.1 395 TIIGDDVFVGSDTQlVaPVTVGNGVTIAAGTTVTR 429
                 79************768****************95 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0     1e-10     2e-07       1      55 [.       6      60 ..       6     136 .. 0.86
   2 ?   -3.8   0.1       4.5   8.9e+03      49      75 ..     152     178 ..     142     180 .. 0.69

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1e-10
                EEEEEECTTSSCTT-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGG CS
        IspD  1 vvvvipAAGsGkRmkaglpKqflelkgqtllehtvdallaskavdkivvvvsedd 55
                + vvi AAG+G+Rm ++lpK + +l+g+++++h +da+ + +a+   +v  +  d
  CTQ26165.1  6 MSVVILAAGKGTRMYSDLPKVLHTLAGKPMVQHVIDAANDLGACAVHLVYGHGGD 60
                579************************************9999987777766666 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.5
                 EEE-GGGHHHHHHHHGGCCEEEEE--S CS
        IspD  49 vvvseddteefeqllldksiqlvaGGd 75 
                 +v ++d  e+ +q+   ++  l+aGG 
  CTQ26165.1 152 IVEHKDASEAQRQIQEINTGILIAGGA 178
                 556666666777777777777888885 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.2e-05     0.025      16      39 ..      25      48 ..       8      53 .. 0.89
   2 ?    3.5   0.0      0.03        59      89     111 ..      95     117 ..      78     124 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-05
                  GGGSEETTEEHHHHHHHHHHHTTT CS
  CTP_transf_3 16 Knlldlggkpliayvleaalkska 39
                  K+l  l+gkp++++v++aa++ +a
    CTQ26165.1 25 KVLHTLAGKPMVQHVIDAANDLGA 48
                  9******************99765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.03
                   TTSEEEEE-TT-TT--HHHHHHH CS
  CTP_transf_3  89 neeiivnlqGdnPllqeevikka 111
                   ++e i+ l+Gd Pl++ e+++++
    CTQ26165.1  95 DDEDILMLYGDVPLISVETLQRL 117
                   3567999************9985 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.065   1.3e+02      27     144 ..     146     281 ..     136     286 .. 0.72
   2 !   12.7   0.1   2.2e-05     0.044     280     318 ..     285     323 ..     276     333 .. 0.66
   3 ?    1.7   0.0     0.048        96     282     330 ..     356     403 ..     346     424 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.065
  Fucokinase  27 gepveqlldlllaiyid.fpkrmkpGvlvtssDvll.....lf.dseeisfdkagvtalavpstldigtnHGVfvlddqsseeeeleirsvkkflhKps 118
                 +++v  +++++ a  ++ ++++++ G+l++ + +l      l  ++++ +   ++++a+a+++  +i + H   +++ +   ++ l++ + +++++   
  CTQ26165.1 146 NGQVTGIVEHKDASEAQrQIQEINTGILIAGGADLKrwlakLTnNNAQGEYYITDIIAMAHQEGHQIVAVHPQRLSEVE-GVNNRLQLARLERVYQAEQ 243
                 66666777777776555145588************95433211233333333448888888888888888877777777.7777999999999999999 PP

  Fucokinase 119 eeelqasgavlkd.............ekvlldsGvvffd 144
                 +e+l   g++l+d               v +d+  v+++
  CTQ26165.1 244 AEKLLLAGVMLRDparfdlrgtlqhgRDVEIDT-NVILE 281
                 999999999999888888888888877788887.66555 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.2e-05
  Fucokinase 280 vlessvsvgegsviehsslkgnvsigsnsivsgleless 318
                 vl  +v++g+g+vi++s+++++++i   s+v + +l++ 
  CTQ26165.1 285 VLGDRVKIGAGCVIKNSTIGDDCEISPYSVVEDAQLQAA 323
                 556666666777777777777777777666666666543 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.048
  Fucokinase 282 essvsvgegsviehsslkgnvsigsnsivsglelesseeslelpddtil 330
                  ++ + g  +++ + ++++nv+ig+++i  + + +++++   + dd+++
  CTQ26165.1 356 GKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKHK-TIIGDDVFV 403
                 5566667777888999*************9999999876.999999887 PP

>> DUF4954  Domain of unknown function (DUF4954)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.4e-05     0.027     175     280 ..     285     387 ..     256     396 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
     DUF4954 175 eigekvkilnaglikNvkigdyatiegasklengtinSskeapveiGegViledfi.issGskikdgavisrcfvGqavklkkqfsaedsllfaNcqge 272
                 ++g++vki    +ikN +igd ++i+  s +e++ ++    a  +iG    l+ +  + +G+++ + + ++++ +G++ k ++   + d+ +++N ++ 
  CTQ26165.1 285 VLGDRVKIGAGCVIKNSTIGDDCEISPYSVVEDAQLQ----AACTIGPFARLRPGAeLLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIG 379
                 468999999999****************999998775....6688999998887653889**********************************99999 PP

     DUF4954 273 ngEavaif 280
                  g +  ++
  CTQ26165.1 380 AGTITCNY 387
                 88776665 PP

>> CofC  Guanylyl transferase CofC like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.7e-05     0.054      31     109 ..      33     117 ..      15     124 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.7e-05
        CofC  31 kamlldvidalkrld....vlvvsedeevleyaldelgvevvkek.ekdlntaveka..feeieekeviiipsdiPlikkedvkdl 109
                 k m++ vida++ l      lv ++  ++l   l+e +++ v +  + +   a+++a  f   ++++++++  d+Pli+ e++++l
  CTQ26165.1  33 KPMVQHVIDAANDLGacavHLVYGHGGDLLRQTLHEDNLNWVLQAeQLGTGHAMQQAapFF-NDDEDILMLYGDVPLISVETLQRL 117
                 679999***99997543334789999********999999665552778899****99866.68889999***********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3412.03
//
Query:       CTQ26166.1  [L=66]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       161  (0.00897987); expected 358.6 (0.02)
Passed bias filter:                      148  (0.00825478); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 511.21
//
Query:       CTQ26167.1  [L=20]
Description: hypothetical protein CH1034_10074 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (20 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      119  (0.00663729); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 169.02
//
Query:       CTQ26168.1  [L=16]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (16 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        67  (0.00373696); expected 358.6 (0.02)
Passed bias filter:                       46  (0.00256568); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.21s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 142.74
//
Query:       CTQ26169.1  [L=139]
Description: F1 sector of membrane-bound ATP synthase, epsilon subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-30  105.4   0.1    1.6e-30  104.8   0.1    1.3  1  ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwi
    2.7e-13   49.9   6.9    4.4e-13   49.3   6.9    1.3  1  ATP-synt_DE    ATP synthase, Delta/Epsilon chain, long alpha-


Domain annotation for each model (and alignments):
>> ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   0.1   1.8e-34   1.6e-30       2      80 .]       6      84 ..       5      84 .. 0.99

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 1.8e-34
                   EEEEEESSSEEEEEEEEEEEEEESSSEEEE-TT--SEEEEEESEEEEEEEGGGEEEEEEESSEEEEEETTEEEEEESSS CS
  ATP-synt_DE_N  2 kleivtpervvfsgeveevvaptteGelgilpgHaplitaLkpgelriktedgeeesiavsgGflevqdnkvtiladta 80
                   +l++v++e+++fsg ve+++++++eGelgi+pgHapl+ta+kpg++ri +++g+ee+i++sgG+levq+ +vt+ladta
     CTQ26169.1  6 HLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGSVTVLADTA 84
                   89***************************************************************************98 PP

>> ATP-synt_DE  ATP synthase, Delta/Epsilon chain, long alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   6.9   4.9e-17   4.4e-13       2      47 .]      89     133 ..      88     133 .. 0.94

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 4.9e-17
                  C--HHHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHTT CS
  ATP-synt_DE   2 dIDverAeeAkerAeerLeeasddnidyarAqaaLrRAlaRlqvak 47 
                  d+D++rA eAk++Aee+++ + + ++dya+A a+L++A+a l+v++
   CTQ26169.1  89 DLDEARALEAKRKAEEHIKSS-HGDVDYAQASAELAKAIAKLRVIE 133
                  9********************.666*******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1073.21
//
Query:       CTQ26170.1  [L=460]
Description: membrane-bound ATP synthase, F1 sector, beta-subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-63  214.5   0.0    1.8e-63  214.0   0.0    1.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    1.4e-19   70.4   3.7    3.2e-19   69.2   3.7    1.7  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
  ------ inclusion threshold ------
      0.024   14.5   1.7       0.11   12.4   0.5    2.6  2  T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.0   0.0     3e-67   1.8e-63       1     213 []     130     342 ..     130     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: 214.0 bits;  conditional E-value: 3e-67
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS.S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsd.d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitl 96 
                  Gi+v+D+++p+++G++++++g++gvGktv + +l+++   + + +++++g+Ger++e +++++e++++++++++ lv+ ++nep+  r+++++tg+t+
   CTQ26170.1 130 GIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEhSgYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTM 227
                  99***************************999988887766447****************************************************** PP

                  HHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHHHHHHSSEEEEB- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  97 AEyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvttatlgitdgfivLd 194
                  AE frd+g++vll++d++ r++ A  e+s++lg+mp++ gy+++l+ ++  l+ER++++  +tGs+t+v+av+++++D++dp + +t++++d+++vL+
   CTQ26170.1 228 AEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITST--KTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLS 323
                  ***********************************************************..99*********************************** PP

                  HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 195 kklaqrkhfPainvlvSvS 213
                  +++a+ +++Pa+++l S+S
   CTQ26170.1 324 RQIASLGIYPAVDPLDSTS 342
                  *****************98 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   3.7   5.4e-23   3.2e-19       1      68 [.       6      72 ..       6      73 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 5.4e-23
                   EEEEETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEE CS
  ATP-synt_ab_N  1 ivqviGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrT 68
                   ivqviG+vvdvef+++++p  y+alev+  + + l+l+v+++lg++ Vr+i+mgs dGl+rG  Vk++
     CTQ26170.1  6 IVQVIGAVVDVEFPQDAVPRVYEALEVQNGN-EVLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDL 72
                   89**************************444.77779*****************************96 PP

>> T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.5   1.8e-05      0.11       2      28 ..     351     377 ..     350     408 .. 0.74
   2 ?   -3.1   0.0       1.2   7.4e+03      39      48 ..     450     459 ..     449     460 .] 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.8e-05
  T3SS_ATPase_C   2 spehlqaarklrellatyqenedLini 28 
                     +eh++ ar +  +l++yqe +d+i i
     CTQ26170.1 351 GQEHYDTARGVQSILQRYQELKDIIAI 377
                    68***********************98 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.2
  T3SS_ATPase_C  39 lDeAiakrpa 48 
                    +DeA++k ++
     CTQ26170.1 450 IDEAVEKAKK 459
                    89***99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3541.81
//
Query:       CTQ26171.1  [L=287]
Description: membrane-bound ATP synthase, F1 sector, gamma-subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-97  324.1   0.0      1e-96  324.0   0.0    1.0  1  ATP-synt  ATP synthase


Domain annotation for each model (and alignments):
>> ATP-synt  ATP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.0   0.0  5.6e-101     1e-96       3     278 ..       5     286 ..       3     287 .] 0.95

  Alignments for each domain:
  == domain 1  score: 324.0 bits;  conditional E-value: 5.6e-101
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHCEHHHHTTT..SSG.S..SSEEEEEEE--SSSSSTTHHHHHHHHHHHHH CS
    ATP-synt   3 keikrRiksvkstkkItkAmkmVaaaklrkaqealeaarpyaekleevlealakreeeekhpllkee.ekkvllivitSDrGLcGgfNsnvikkaekli 100
                 kei+++i+sv++t+kItkAm+mVaa+k+rk+qe++ a+rpya+++++v+ +la+ + e khp+l+e+ +k+v+++v+++DrGLcGg+N n++kk+ + +
  CTQ26171.1   5 KEIRSKIASVQNTQKITKAMEMVAASKMRKSQERMAASRPYADTMRKVIGHLANGNLEYKHPYLEERdVKRVGYLVVSTDRGLCGGLNINLFKKLLAEM 103
                 9*****************************************************9999*****99966***************************5555 PP

                 HHHHTTT.ETEEEEESHHHHHHH.HHSS.EHHTTCE-TSS--HHHHHHHHHHHHSHHHTTSBSEEEEEEEEECCTSEEEEEEEEESST...HC...S.. CS
    ATP-synt 101 eelkkeg.evklvvvGkkgreyf.krkvevqleftgvskkptfeeaseiaeeildlyeegeideveivynkfksaisqeptvekllplekeee...kke 194
                 ++++++g + +l ++G+kg ++f + + +v++++tg++++p+++e    ++ +l++y+eg++d++++v nkf++++sq pt+ +llpl  +e+   k++
  CTQ26171.1 104 KAWSDKGvQCDLAMIGSKGVSFFnSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYVVSNKFINTMSQVPTITQLLPLPASEDadlKRK 202
                 6678889889*************88899***********************************************************644444677*** PP

                 SSTSEESS.HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ATP-synt 195 kseyefepdeeevleellpeylasliyrallesaasEqaaRmtaMdnAtknakelidkltleyNraRQaaITqELieIvsGaeA 278
                 +++y +epd++++l++ll++y++s++y+ ++e++asEqaaRm+aM++At+n + li++l+l yN+aRQa+ITqEL+eIvsGa+A
  CTQ26171.1 203 SWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAA 286
                 **********************************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2215.59
//
Query:       CTQ26172.1  [L=513]
Description: membrane-bound ATP synthase, F1 sector, alpha-subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-73  246.2   0.1    4.6e-73  245.4   0.1    1.4  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    1.3e-45  154.8   0.7    2.4e-45  153.9   0.7    1.5  1  ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal doma
    4.3e-13   49.6   0.1      1e-12   48.4   0.1    1.6  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
    6.7e-05   22.4   0.1    0.00012   21.5   0.1    1.4  1  ATPase         KaiC
  ------ inclusion threshold ------
      0.022   14.7   0.0       0.04   13.8   0.0    1.4  1  ATPase_2       ATPase domain predominantly from Archaea
      0.045   13.9   0.1       0.22   11.7   0.0    2.2  2  HAS-barrel     HAS barrel domain


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.4   0.1   1.5e-76   4.6e-73       1     213 []     149     375 ..     149     375 .. 0.97

  Alignments for each domain:
  == domain 1  score: 245.4 bits;  conditional E-value: 1.5e-76
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHH.HHHHHHSSTSSEEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvis.qslskqsnsddaiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitlA 97 
                  G + +Da++pi++Gqr+li+g++++Gkt+++ +++++q +s   ++yv+iG++++++++v+++++e++++++t++v++t++e++a++++++y+g++++
   CTQ26172.1 149 GYKSVDAMIPIGRGQRELIIGDRQTGKTALAiDAIINQRDSGIKCVYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMG 246
                  7899***************************9******877669****************************************************** PP

                  HHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEE.............TSSEEEEEEEEEEE-GGCSTTSHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  98 EyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagka.............pdrtGsvtivaavspaggDfsdpvtta 182
                  Eyfrd+g+++l+++d+ls++a A+r+isl+l+++p+++++p+++++ +++l+ERa+++             + +tGs+t+++++++++gD+s+ v+t+
   CTQ26172.1 247 EYFRDRGEDALIVYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVnaeyveaftkgevKGKTGSLTALPIIETQAGDVSAFVPTN 344
                  **********************************************************8888888877777777************************ PP

                  HHHHSSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 183 tlgitdgfivLdkklaqrkhfPainvlvSvS 213
                  +++itdg+i+L+++l++++++Pa+n+++SvS
   CTQ26172.1 345 VISITDGQIFLETNLFNAGIRPAVNPGISVS 375
                  *****************************99 PP

>> ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9   0.7   8.1e-49   2.4e-45       1     126 []     382     507 ..     382     507 .. 0.99

  Alignments for each domain:
  == domain 1  score: 153.9 bits;  conditional E-value: 8.1e-49
  ATP-synt_ab_C   1 QtkamkkvagsLklelaqYrEleaFaqFgsdLDeatkkqLerGerlvelLkQkqysplsveeqviilyaatngllddipvekvkefekelleylee 96 
                    Qtk+mkk++g ++++laqYrEl+aF+qF+sdLD+at+kqL++G++++elLkQkqy+p+sv++q ++l+aa++g+l d++++k+ +fe++ll+y+++
     CTQ26172.1 382 QTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELAKIGSFEAALLAYVDR 477
                    9*********************************************************************************************** PP

  ATP-synt_ab_C  97 ekkeileeieekkklsdeleeklkeaikef 126
                    +++ +++ei++++ ++de+e klk ++++f
     CTQ26172.1 478 DHAPLMQEINQSGGYNDEIEGKLKGILDSF 507
                    ************************999876 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.1   3.4e-16     1e-12       6      69 .]      29      92 ..      26      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 3.4e-16
                   TTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N  6 GpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69
                   G++v+v +g  r++g+ +++++e+   +  +++ alnl+ d+V+++vmg++  l +G++Vk TG
     CTQ26172.1 29 GTIVSVSDGVIRIHGLAECMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTG 92
                   9**************************************************************9 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1     4e-08   0.00012       1      70 [.     146     212 ..     146     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 4e-08
      ATPase   1 vktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenaksl 70 
                 v+tg +  D ++   i +g+  li G+  tGKt +a   +i++  + g ++v+v++ ++a+ + + +++l
  CTQ26172.1 146 VQTGYKSVDAMI--PIGRGQRELIIGDRQTGKTALAIDAIINQRDS-GIKCVYVAIGQKASTISNVVRKL 212
                 578888888888..57789999*********************666.*************8888777766 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.3e-05      0.04      24      91 ..     166     234 ..     151     278 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.3e-05
    ATPase_2  24 fiYGpegsGKtaLlkeiienledkdkyviyyialre.esiskldefieeeeekkklekalgiavpkael 91 
                 +i G ++ GKtaL   +i n++d++ + +y+   ++ + is++ +++ee+    +   ++++a ++a+l
  CTQ26172.1 166 LIIGDRQTGKTALAIDAIINQRDSGIKCVYVAIGQKaSTISNVVRKLEEHGALANTIVVVATASESAAL 234
                 799**********999999999********987776156789999876554443333333333333333 PP

>> HAS-barrel  HAS barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.5e-05      0.22       8      84 ..      31      88 ..      26     112 .. 0.80
   2 ?   -1.9   0.0       1.3   3.8e+03      55      78 ..     204     226 ..     192     237 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.5e-05
  HAS-barrel  8 sts.sslifrvegskdvkvGeyVeielpdgeivlGmvtdirrgnselsndlalvlsleeleeangddevalatedt.......gv 84
                  s s++++r++g+++ + Ge+++ +++    ++ + ++++r                       d+++a++ +++        v
  CTQ26172.1 31 IVSvSDGVIRIHGLAECMQGEMISLPGN----RYAIALNLER-----------------------DSVGAVVMGPYadlaegmKV 88
                4555**********************66....99999*****.......................99999988888777776633 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
  HAS-barrel  55 ndlalvlsleeleeangddevala 78 
                 ++ + v+ lee+++  + ++ ++a
  CTQ26172.1 204 TISNVVRKLEEHGALANTIV-VVA 226
                 33445556666666666644.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3727.55
//
Query:       CTQ26173.1  [L=177]
Description: F1 sector of membrane-bound ATP synthase, delta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-51  173.9   1.1    3.4e-51  173.8   1.1    1.0  1  OSCP         ATP synthase delta (OSCP) subunit
  ------ inclusion threshold ------
      0.022   15.1   0.1      0.037   14.4   0.1    1.4  1  Uteroglobin  Uteroglobin family


Domain annotation for each model (and alignments):
>> OSCP  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   1.1   3.8e-55   3.4e-51       1     171 [.       7     174 ..       7     175 .. 0.97

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 3.8e-55
        OSCP   1 iarrYAkAlfelAkekgaleeveeelealeavlaedkklaellsnpavsaeekkdlleelfkeklseavknflkllaenkRlalLpeiaeefeellaea 99 
                 +ar+YAkA+f++A e++++e+++++l  + a + +++++aells  a+  e++++++ ++++e+l+e  +n++k++aen+Rl++Lp+++e+f +l a++
  CTQ26173.1   7 VARPYAKAAFDFAVEHNSVERWQDMLAFA-AEVTKNDQMAELLSG-ALAPETLSEAFIAICGEQLDENGQNLIKVMAENNRLKVLPDVLEQFIHLRAAS 103
                 89************************999.999********9965.899999*********************************************** PP

        OSCP 100 rgiveaeVtsavpLtdeqlekleaalakklgkkkvkleekvdpsliGGvvvkvgdkviDgSvkgkLeklkeq 171
                 + i+e+eV+sa +L+deql+++ +a++k+l++ kvkl++k+d+s+++G+++++gd viDgSv+g+Le+l++ 
  CTQ26173.1 104 EAIAEVEVISANQLSDEQLARIVSAMEKRLSR-KVKLNCKIDKSVMAGIIIRAGDMVIDGSVRGRLERLADV 174
                 ********************************.7***********************************975 PP

>> Uteroglobin  Uteroglobin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   4.1e-06     0.037      36      87 ..      83     135 ..      52     138 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.1e-06
                  HS-HHHHHHHHHTT---HHHHHHHHHHHHHHT.TS-HHHHHHHHHHHHHHHTS CS
  Uteroglobin  36 egseeeYkeeLqkynpdpeaeealaelKqcvd.klsnetkenvakllekilss 87 
                  ++  + + + L+++++  +a ea+ae+      +ls+e+++++++++ek ls 
   CTQ26173.1  83 NNRLKVLPDVLEQFIHLRAASEAIAEVEVISAnQLSDEQLARIVSAMEKRLSR 135
                  5567788899******************988779***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1359.28
//
Query:       CTQ26174.1  [L=156]
Description: F0 sector of membrane-bound ATP synthase, subunit b [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-40  137.9  19.3    2.5e-40  137.6  19.3    1.1  1  ATP-synt_B       ATP synthase B/B' CF(0)
  ------ inclusion threshold ------
      0.014   15.0   5.3       0.03   14.0   4.7    1.6  2  Mt_ATP-synt_B    Mitochondrial ATP synthase B chain precursor
      0.029   14.8   5.1      0.054   13.9   5.2    1.4  1  ESM4             Enhancer of split M4 family
      0.034   13.2   6.1       0.04   13.0   6.1    1.0  1  CRISPR_Cse1      CRISPR-associated protein Cse1 (CRISPR_cse1)
      0.045   14.2  27.0      0.037   14.4  25.6    1.6  1  V-ATPase_G_2     Vacuolar (H+)-ATPase G subunit
      0.095   13.2  24.6       0.31   11.6  21.4    2.6  2  V-ATPase_G       Vacuolar (H+)-ATPase G subunit
       0.16   12.2   5.2       0.21   11.7   5.2    1.2  1  DUF719           Protein of unknown function (DUF719)
       0.26   11.4  22.9        2.1    8.4  22.9    2.1  1  DivIVA           DivIVA protein
       0.89    8.4   2.2        1.1    8.1   2.2    1.1  1  LMBR1            LMBR1-like membrane protein
        2.2    8.6  10.6       0.13   12.6   2.1    2.6  2  RNA_pol_Rpb2_45  RNA polymerase beta subunit external 1 domai


Domain annotation for each model (and alignments):
>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6  19.3   1.4e-43   2.5e-40       1     132 []       6     137 ..       6     137 .. 0.99

  Alignments for each domain:
  == domain 1  score: 137.6 bits;  conditional E-value: 1.4e-43
  ATP-synt_B   1 tlvvnliallilvgllikfawkplkkvLdkReekIadeiaeAeerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlkes 99 
                 t++ ++ia++i+v +++k++w+pl+ +++kR+++I d++a+Ae+++k+++ ++a+a++qlk+A+aeA+ ii++A+k+++++ +e++aeae+e +++ ++
  CTQ26174.1   6 TILGQAIAFVIFVWFCMKYVWPPLMAAIEKRQKEISDGLASAERAKKDLDLAQANATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQ 104
                 6889*********************************************************************************************** PP

  ATP-synt_B 100 AaaeIeqekdralaeLreqvvalavqiaeklle 132
                 A+aeI++e++ra++eLr+qv+ lav++aek++e
  CTQ26174.1 105 AQAEIDAERKRAREELRKQVAILAVAGAEKIIE 137
                 *******************************95 PP

>> Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   4.7   1.7e-05      0.03      20     116 ..      11     110 ..       8     124 .. 0.80
   2 ?    0.2   3.8      0.28   5.1e+02      40     141 ..      77     109 ..      68     154 .. 0.46

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH.H..HHHHHCHHHHHHHHHHHHHHHHHH CS
  Mt_ATP-synt_B  20 alcfigflilvakslgpsikefldkriekiqeelnqsrnlkeealkerieqekklqslveltkslfev.s..keqvaleaeaferelqaklareik 112
                    a+ f++f+ +  k++ p + + ++kr ++i++ l ++ + k++      +   +l++ +++ ++++e     + q+  ea+a  ++ ++k+ ++++
     CTQ26174.1  11 AIAFVIFVWFCMKYVWPPLMAAIEKRQKEISDGLASAERAKKDLDLAQANATDQLKKAKAEAQVIIEQaNkrRSQILDEAKAEAEQERTKIVAQAQ 106
                    789******************************************999999999999999999988641311445555555555566666666666 PP

                    HHHH CS
  Mt_ATP-synt_B 113 kkld 116
                      +d
     CTQ26174.1 107 AEID 110
                    6555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.28
                    HHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Mt_ATP-synt_B  40 efldkriekiqeelnqsrnlk.eealkerieqekklqslveltkslfevskeqvaleaeaferelqaklareikkkldtlvnaessrrqrlQdelv 134
                    e ++kr ++i +e ++  +++ ++++ ++                                                                   
     CTQ26174.1  77 EQANKRRSQILDEAKAEAEQErTKIVAQAQA----------------------------------------------------------------- 107
                    3333333333333332222221222222222................................................................. PP

                    HHHHHHH CS
  Mt_ATP-synt_B 135 kgvissV 141
                          +
     CTQ26174.1 108 -----EI 109
                    .....21 PP

>> ESM4  Enhancer of split M4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   5.2     3e-05     0.054      30     117 ..      22     102 ..      18     148 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3e-05
        ESM4  30 lkkvlkpLrrllkkggkgrkteltlahpnnvdlentqqqqqqqqeeldednssnaeLeqqlveeevek.saqscaacahgrncqhthhq 117
                 +k v+ pL+  ++k++k+ +  l +a++ ++dl+  q +++ q+        ++a+ e+q++ e+ +k  +q + + +++ +++ t+  
  CTQ26174.1  22 MKYVWPPLMAAIEKRQKEISDGLASAERAKKDLDLAQANATDQL--------KKAKAEAQVIIEQANKrRSQILDEAKAEAEQERTKIV 102
                 9*********************************9887555554........4444444444444444223333333333333333321 PP

>> CRISPR_Cse1  CRISPR-associated protein Cse1 (CRISPR_cse1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   6.1   2.2e-05      0.04     347     448 ..      16     125 ..       4     130 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.2e-05
                  EEEEEEEEEEEECHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSHH.......HHHHHHHHHHHHHHHHHHHHHHHCCCCCS... CS
  CRISPR_Cse1 347 vrdwveetlplpaalledkealreaveeaveaaeevaralrsavkaaakellkkgkkka.......gdasaaraafwaalegpfrellaalgpddd.. 435
                  +  w+  ++ +p  +    e++++ ++++++ ae++ + l  a  +a ++l+k +++++       + +s++ +++ a++e++  +++a+ +++ d  
   CTQ26174.1  16 IFVWFCMKYVWPPLMA-AIEKRQKEISDGLASAERAKKDLDLAQANATDQLKKAKAEAQviieqanKRRSQILDEAKAEAEQERTKIVAQAQAEIDae 112
                  5667777788888666.5677888********************999999999999888***9999999999999999**************999876 PP

                  HCTHHHHHHHHHH CS
  CRISPR_Cse1 436 aaealkawrktlr 448
                  +++a+++ rk+++
   CTQ26174.1 113 RKRAREELRKQVA 125
                  6666666666665 PP

>> V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4  25.6   2.1e-05     0.037       4      95 ..      38     124 ..      34     132 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.1e-05
                   XHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHH CS
  V-ATPase_G_2   4 srllkeLaerEaeLdqrlEaArkeaereveaAeaeAarilreAeakakalqaeyeqelaeevarireeararaeaeaqavrkraearlqqAv 95 
                   + + + La+ E++ ++ l+ A+ +a  ++++A+aeA+ i+++A+++  ++ +e ++e     +++r ++ a+a+ae  a rkra + l + v
    CTQ26174.1  38 KEISDGLASAERA-KKDLDLAQANATDQLKKAKAEAQVIIEQANKRRSQILDEAKAE----AEQERTKIVAQAQAEIDAERKRAREELRKQV 124
                   5566678999988.67899**************************998887665555....5555555555555555555555555554433 PP

>> V-ATPase_G  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   5.1    0.0012       2.1       3      44 ..      37      78 ..      35      78 .. 0.86
   2 ?   11.6  21.4   0.00017      0.31       2      86 ..      58     142 ..      57     154 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0012
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G  3 sqgIqqLLqAEkeAaeivkeArkrkakrlkqAkeeAekEiee 44
                ++ I + L+  ++A++ +  A+ + +++lk+Ak+eA+  ie+
  CTQ26174.1 37 QKEISDGLASAERAKKDLDLAQANATDQLKKAKAEAQVIIEQ 78
                5567777777789************************98876 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHSSHHHHHHHHHH CS
  V-ATPase_G   2 qsqgIqqLLqAEkeAaeivkeArkrkakrlkqAkeeAekEieeyrakkekefkekeaeklgseeelekkieketeekikelkesv 86 
                 q ++ +qL +A  eA+ i+++A kr+++ l +Ak+eAe+E  +  a+ ++e+  +++++  +  + ++ +    +eki e + + 
  CTQ26174.1  58 QANATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIDAERKRAREELRKQVAILAVAGAEKIIERSVDE 142
                 667889**************************************99999999998888766655555555555555554443333 PP

>> DUF719  Protein of unknown function (DUF719)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   5.2   0.00012      0.21     107     174 ..      38     106 ..      29     118 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
      DUF719 107 kvlsgGLdaLefiGkktmdvlqegdp.glkkkkall..leaekkptLsqvLreaKekeeqeekaeeeaqee 174
                 k +s GL + e   kk +d  q +   +lkk ka    + ++ ++  sq+L eaK+++eqe +++ +aq++
  CTQ26174.1  38 KEISDGLASAER-AKKDLDLAQANATdQLKKAKAEAqvIIEQANKRRSQILDEAKAEAEQE-RTKIVAQAQ 106
                 567888888877.5788888776654267777764333678889999*************9.554444444 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  22.9    0.0012       2.1      48     122 ..      33     108 ..      28     148 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
                 HHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX CS
      DivIVA  48 vkeleeklkeykeleetLkktlvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeie.elkrq 122
                 +++ ++++++     e  kk l +aq  a +  ++ak+ea++ii++A+k+ ++i++ea+ ea++ +++i  + + +
  CTQ26174.1  33 IEKRQKEISDGLASAERAKKDLDLAQANATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVaQAQAE 108
                 556666666655555555777899********************************98888888777654244444 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.2   0.00063       1.1     193     303 ..      35     144 ..       4     154 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00063
       LMBR1 193 eiksdldeelkklyfeaaklntekeeaereledllkevkklrksisesdp.lr.kyleeilkkvPeeiaeklks..nenkteeslaklekqlikalqkr 287
                 + ++    e++   ++a++ +++++ a+ +  d lk++k+  + i e+++ +r + l+e   +  +e ++ +++   e ++e++ a++e + + a+   
  CTQ26174.1  35 KRQK----EISDGLASAERAKKDLDLAQANATDQLKKAKAEAQVIIEQANkRRsQILDEAKAEAEQERTKIVAQaqAEIDAERKRAREELRKQVAILAV 129
                 3333....5555556667777777788888888888888887777777754443444444444444444444445444447777777777777777777 PP

       LMBR1 288 ertekqwkrllekale 303
                 +  ek  +r +++a +
  CTQ26174.1 130 AGAEKIIERSVDEA-A 144
                 77777777777777.3 PP

>> RNA_pol_Rpb2_45  RNA polymerase beta subunit external 1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.3       0.3   5.4e+02      17      31 ..      68      82 ..      63      90 .. 0.88
   2 ?   12.6   2.1     7e-05      0.13      17      41 ..      94     118 ..      92     148 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.3
                     HHHHTTSEEE-SSS- CS
  RNA_pol_Rpb2_45 17 AdeEekyviAqAnap 31
                     A+ E + +i qAn+ 
       CTQ26174.1 68 AKAEAQVIIEQANKR 82
                     899*********975 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 7e-05
                      HHHHTTSEEE-SSS-BETTSCBSSS CS
  RNA_pol_Rpb2_45  17 AdeEekyviAqAnapldeegrfvee 41 
                      A++E  +++AqA+a++d+e + ++e
       CTQ26174.1  94 AEQERTKIVAQAQAEIDAERKRARE 118
                      99***************99876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2925  (0.163144); expected 358.6 (0.02)
Passed bias filter:                      925  (0.0515924); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 1082.00
//
Query:       CTQ26175.1  [L=79]
Description: F0 sector of membrane-bound ATP synthase, subunit c [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-09   38.3  10.7    1.6e-09   37.9  10.6    1.3  1  ATP-synt_C  ATP synthase subunit C
  ------ inclusion threshold ------
      0.024   14.4   0.4      0.028   14.1   0.4    1.2  1  HlyIII      Haemolysin-III related


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9  10.6   1.8e-13   1.6e-09       1      55 [.      11      69 ..      11      76 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1.8e-13
                HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSG....HHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C  1 lgaglavGlsalgsGigiGkagsagiravarnp....klftksliilafaeaialygLi 55
                ++a++++Gl+a+g++igiG++g++ +++ ar+p     l+t+++i+++++ ai ++++ 
  CTQ26175.1 11 MAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPdlipLLRTQFFIVMGLVDAIPMIAVG 69
                69*******************************999999999***********998875 PP

>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   3.2e-06     0.028     108     158 ..       8      69 ..       1      78 [. 0.67

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.2e-06
      HlyIII 108 llylslilalgvlgiisklvplfsr...........pearplravlfillgllgvipllhll 158
                 lly++  +++g+++i   +                   + +lr+ +fi++gl++ ip++ + 
  CTQ26175.1   8 LLYMAAAVMMGLAAIGAAIGIGILGgkflegaarqpDLIPLLRTQFFIVMGLVDAIPMIAVG 69 
                 55555555666555555555554334555567766566699****************99855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 637.91
//
Query:       CTQ26176.1  [L=271]
Description: F0 sector of membrane-bound ATP synthase, subunit a [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-56  189.8  23.1    6.9e-56  189.5  23.1    1.0  1  ATP-synt_A  ATP synthase A chain
  ------ inclusion threshold ------
      0.057   13.3   0.3        0.1   12.5   0.3    1.4  1  WHH         A nuclease of the HNH/ENDO VII superfamily with c
        1.1    9.1   6.1       0.62    9.9   1.5    2.3  2  CHD5        CHD5-like protein
        2.8    8.1   5.0         25    5.0   0.7    2.4  2  DUF3333     Domain of unknown function (DUF3333)


Domain annotation for each model (and alignments):
>> ATP-synt_A  ATP synthase A chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.5  23.1   1.5e-59   6.9e-56       1     211 []      46     265 ..      46     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 189.5 bits;  conditional E-value: 1.5e-59
                 HHHHHHHHHHHHCCC.CCSS.T.TTTSHHHHHHHHHHHHHHHHHHHHCTSSSTXHHHHHHHHHHHHHHHHHCCHCCSST................TTTT CS
  ATP-synt_A   1 vlttlivllilllllllatrkkkkklpgklqnlvealvefvdnlvksvigkkkkkkffpliltlflfilvsNllgliPg................lraa 83 
                 +++++++ l++l ++  +++k+++++pgk+q+++e+++ fv++ vk++ + +k k ++pl+lt+f++++++Nl++l+P+                   +
  CTQ26176.1  46 MFFSVVLGLLFLAMFRSVAKKATSGVPGKFQTFIEMIIGFVHGSVKDMYH-GKSKVIAPLALTVFVWVFLMNLMDLLPIdllpyigehifglpalRVVP 143
                 57888899999988888898898999***********************5.3679********************996666666777777777767778 PP

                 TCHHHHHHHHHHHHHHHHHHHHHHHHGG..GGCHHHSS...SCCCCHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTGCCCTTCHH CS
  ATP-synt_A  84 tadinvtlalAlivfllvlilgikkkglkgyfkklfvp...plllvplllpielisefarpvsLalRLfgNifAGelllallagllllllllavllsvl 179
                 +ad+n+tl++Al vf+l+++++ik kg++g++k+l++    +++++p++l++e +s +++pvsL+lRLfgN++AGel+++l+agll  +         +
  CTQ26176.1 144 SADVNITLSMALGVFILIIFYSIKMKGVGGFVKELTMQpfnHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLLP-W---------W 232
                 ***********************************9444689*****************************************8852.2.........2 PP

                 H.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_A 180 i.lllavlllllelfvgfiQAfvFtlLtlvYis 211
                 + ++l+v++++++++++++QAf+F++Lt+vY+s
  CTQ26176.1 233 SqWVLNVPWAIFHILIITLQAFIFMVLTIVYLS 265
                 225689*************************96 PP

>> WHH  A nuclease of the HNH/ENDO VII superfamily with conserved WHH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   2.3e-05       0.1       4      31 ..       6      37 ..       3      39 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.3e-05
         WHH  4 atpkgyTWHHldd....tgtmqLVpeevHeat 31
                 tp++y+ HHl++     +t +LV+   H+at
  CTQ26176.1  6 MTPQDYIGHHLNNlqldLRTFSLVDPHNHTAT 37
                69**********9777559******9999984 PP

>> CHD5  CHD5-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.065   2.9e+02     105     143 ..     100     138 ..      88     162 .. 0.79
   2 ?    9.9   1.5   0.00014      0.62     116     147 ..     214     245 ..     196     262 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.065
        CHD5 105 vlttvpqlvlkfwyrktpvfylpkgwfPllvewllslpl 143
                 v+  +  +v+ + +  + +  lp +++P++ e ++ lp 
  CTQ26176.1 100 VIAPLALTVFVWVFLMNLMDLLPIDLLPYIGEHIFGLPA 138
                 556667778888888889999999999999999998775 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00014
        CHD5 116 fwyrktpvfylpkgwfPllvewllslplaplg 147
                  +y+ + +f+l  g++P++ +w+l++p a+ +
  CTQ26176.1 214 NMYAGELIFILIAGLLPWWSQWVLNVPWAIFH 245
                 5789999******************9999765 PP

>> DUF3333  Domain of unknown function (DUF3333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2    0.0087        39      20      58 ..      48      88 ..      45     108 .. 0.78
   2 ?    5.0   0.7    0.0056        25      27      46 ..     157     176 ..     149     180 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0087
     DUF3333 20 aAialallfLviL..lvsIvskGltAFtqteitleveldae 58
                ++++l+llfL+++  +++  ++G+++ +qt i++ + + + 
  CTQ26176.1 48 FSVVLGLLFLAMFrsVAKKATSGVPGKFQTFIEMIIGFVHG 88
                79********9864344556778999999999998888665 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0056
     DUF3333  27 lfLviLlvsIvskGltAFtq 46 
                 +f++i+++sI  kG+++F++
  CTQ26176.1 157 VFILIIFYSIKMKGVGGFVK 176
                 477889************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2013.12
//
Query:       CTQ26177.1  [L=127]
Description: ATP synthase, membrane-bound accesory subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-15   57.8  13.1    1.6e-15   57.3  13.1    1.2  1  ATP-synt_I  ATP synthase I chain


Domain annotation for each model (and alignments):
>> ATP-synt_I  ATP synthase I chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3  13.1   8.8e-20   1.6e-15       1      99 [.      14     109 ..      14     110 .. 0.95

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 8.8e-20
  ATP-synt_I   1 rivliqlvllavlalgwlltgsasvalsallGglisvlpfalfalrvfrfsgalarkkkkivrslylgeairlaltiallilalklvkelsllallvGl 99 
                 ++++iql+ ++++ l+++l   + +++sa +Ggl++vlp+++f+++++r++    + k+++++ +++gea++++lt+all++al +  ++ +l+l+v++
  CTQ26177.1  14 KLLFIQLLAVMASGLLFSLK-DPFWGISAVCGGLAVVLPNLMFIIFAWRHQAHTPA-KGRVAWTFAFGEAFKVLLTFALLAVALAV-LKVVFLPLIVTW 109
                 67899**************9.9*************************999987666.9****************************.9*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1006  (0.0561102); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1025.57
//
Query:       CTQ26178.1  [L=207]
Description: methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-64  214.4   0.0    8.9e-64  214.2   0.0    1.0  1  GidB             rRNA small subunit methyltransferase G
    1.7e-06   27.9   0.0    3.2e-06   27.0   0.0    1.5  2  Methyltransf_31  Methyltransferase domain
    7.6e-05   23.3   0.0    0.00013   22.6   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.053   13.1   0.0      0.076   12.6   0.0    1.2  1  MTS              Methyltransferase small domain


Domain annotation for each model (and alignments):
>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.2   0.0     2e-67   8.9e-64       1     184 []      20     200 ..      20     200 .. 0.98

  Alignments for each domain:
  == domain 1  score: 214.2 bits;  conditional E-value: 2e-67
                 HHHHHHHHHHHHHHHHHHS---S--SHHHHHHHCHHHHHHHGGCS-CCC-.EEEETSTTTTTHHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT-SS CS
        GidB   1 qleklkkYlelllkwNkkinLtsikepeellerhlldslsvlellkekrdkviDvGsGaGlPGipLaiarpelkltLleslekkiaFLeevkeelklen 99 
                 q+++l +Y+ ll kwNk++nLts+++p+e+l rh+lds+ v+++l+ +r  +iDvG+G+GlPGipLai++pe ++tLl+sl k+++FL++v++elkl+n
  CTQ26178.1  20 QKNQLVAYVGLLDKWNKAYNLTSVRDPNEMLVRHILDSIIVAPYLQGSR--FIDVGTGPGLPGIPLAIVCPESHFTLLDSLGKRVRFLRQVQHELKLDN 116
                 6799*********************************************..************************************************ PP

                 EEEEES-CCCTTTTT-EEEEEEC-SSSHHHHHHHHCCCEEEEEEEEEEESS--HHHHHCCHCCCCCCCEEEEEEEEEE-TEEEEE CS
        GidB 100 veivearaeekqeeekydvvtsRAlaslnelteillkllkegglilalKGksaedeleekekalqlskvevlsvkslkekerhlv 184
                 v+ v++r+e++  e ++d v+sRA+asln++++++++l   +g ++alKG  +++e+e   + + + +v++l+v+ l e+erhlv
  CTQ26178.1 117 VTPVQSRVEAFPAEPPFDGVISRAFASLNDMVSWCHHLPAANGHFYALKGLAQKEEMESLPEGYDIVEVIELHVPRL-EGERHLV 200
                 *****************************************************************************.6669986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.86   3.9e+03      94     113 ..       2      21 ..       1      50 [. 0.58
   2 !   27.0   0.0   7.2e-10   3.2e-06       4      86 ..      66     146 ..      64     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.86
  Methyltransf_31  94 leeiervlkpggilliedpr 113
                      l++++r+l + gi l+++ +
       CTQ26178.1   2 LNKLSRLLDEAGISLTDHQK 21 
                      66777777777777755555 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 7.2e-10
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl..na 86 
                      g r++D+G+G G  ++ la  ++p+++++++D   + +++ r+   +l+ldnv+  q+ +e+++   e  +fD ++s+++   n+
       CTQ26178.1  66 GSRFIDVGTGPGLPGIPLA-IVCPESHFTLLDSLGKRVRFLRQVQHELKLDNVTPVQSRVEAFP--AE-PPFDGVISRAFAslND 146
                      6789***************.********************************************..55.79******85544433 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0     3e-08   0.00013       2      77 ..      70     144 ..      69     160 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3e-08
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGS CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhl 77 
                      +d+G+G+G   + la  ++++++t +D   + ++  r+  +e +l nv+ vq  +e++p e   fD v+s+ a+  l
       CTQ26178.1  70 IDVGTGPGLPGIPLAIVCPESHFTLLDSLGKRVRFLRQVQHELKLdNVTPVQSRVEAFPAEP-PFDGVISR-AFASL 144
                      69*************99999******************99998899*************887.*******4.65544 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.7e-05     0.076      31     102 ..      65     137 ..      42     140 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.7e-05
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdliv 102
                 +  + +D+G+G G+ g+ la  +pe + tl+d   + +++ ++  ++ kl+ v+ v+s v +  +e  fd ++
  CTQ26178.1  65 QGSRFIDVGTGPGLPGIPLAIVCPESHFTLLDSLGKRVRFLRQVQHELKLDnVTPVQSRVEAFPAEPPFDGVI 137
                 45679****************************9999999999999998887777777766666677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1550.65
//
Query:       CTQ26179.1  [L=629]
Description: glucose-inhibited cell-division protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.6e-170  565.0   0.0   1.1e-169  564.7   0.0    1.1  1  GIDA           Glucose inhibited division protein A
    2.2e-79  266.5   0.8    3.2e-79  266.0   0.8    1.2  1  GIDA_assoc     GidA associated domain
    7.3e-08   31.9   3.0    0.00017   20.8   0.3    2.3  2  FAD_binding_2  FAD binding domain
    1.6e-07   31.0   3.9    1.6e-07   31.0   3.9    1.7  2  FAD_oxidored   FAD dependent oxidoreductase
    2.7e-05   23.5   1.6    7.2e-05   22.2   1.6    1.7  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      4e-05   23.0   1.0    0.00011   21.6   1.0    1.7  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    9.5e-05   21.3   3.0     0.0026   16.5   0.2    2.9  3  HI0933_like    HI0933-like protein
    0.00031   20.4   0.6       0.64    9.5   0.0    2.4  2  DAO            FAD dependent oxidoreductase
     0.0046   16.2   1.9      0.032   13.5   1.9    2.1  1  Thi4           Thi4 family
     0.0091   16.5   0.2      0.032   14.8   0.2    2.0  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
       0.13   12.5   0.9        1.3    9.3   0.5    2.7  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
       0.18   11.0   0.1       0.47    9.6   0.0    1.6  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
       0.47   10.4   4.0        0.2   11.6   0.3    2.1  2  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  564.7   0.0  8.1e-173  1.1e-169       1     391 [.       8     398 ..       8     399 .. 0.99

  Alignments for each domain:
  == domain 1  score: 564.7 bits;  conditional E-value: 8.1e-173
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SHHHHHHHHEEEEEEESTTS-CCC-EEEEEE-HHHHHH CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkldtiaelsCnpsiggiakgllvrEidalggliikaadkagiqfrilNrskGpavralraqvdrelysk 99 
                 dvi+iGgGhAG+eAA+aaar+G ++lL+th++dt++++sCnp+iggi+kg+lv+E+dalggl++ka+d+agiqfrilN+skGpavra+raq+dr ly++
  CTQ26179.1   8 DVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQ 106
                 8************************************************************************************************** PP

                 HHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT-EEEETTEEEESSCTTC--B-THHHHHHHTT--EEEEEEEE--EE CS
        GIDA 100 evteklenepnleiieeeveeliveekkvkgvvtedgetikakavviatGtflkgkihigekelsaGrlgeltseglseslkelgfellrlktgtppri 198
                 +v+ +len+pnl i+++ ve+live+++v g vt++g +++akavv++ Gtfl+gkihig +++s Gr+g+++s  ls++l+el+ ++ rlktgtppri
  CTQ26179.1 107 AVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVSRLKTGTPPRI 205
                 *************************************************************************************************** PP

                 EGGGS-TTTSEEE---SS-B-SSSSSSST.CG----EEEEE--HHHHHHHHCTCCC-T.T----B--S-CCC-SSTCCCCCCSTT-S--EEEEEESSTT CS
        GIDA 199 dkesidfskleeqsgdkegeefsylnkpl.nkeqvecfltatneathkiikenlkksaklfegcieelgprycpsiedkivrladkeshqvfLepegle 296
                 d+++idfs+l +q+gd++++ fs++ +   + +qv+c++t+tne+th++i++nl++s+ ++ g ie++gprycpsiedk++r+ad+++hq+fLepegl+
  CTQ26179.1 206 DARTIDFSVLAQQHGDNPMPVFSFMGSADqHPRQVPCYITHTNEKTHDVIRNNLDRSP-MYAGVIEGIGPRYCPSIEDKVMRFADRNQHQIFLEPEGLT 303
                 *****************9*******998857***************************.**************************************** PP

                 --EEEEET----S-HHHHHHHHTTSTT-TT--EEE--EEEEEEEE-GGGB-TTSBBSSSBTEEE-CGGGTB-SHHHHHHHHHHHHHHHHHHHCTS CS
        GIDA 297 teliylvgfstslpeevqkevlrsipGLenaeivrpGyaieydyvdprqllntLetkkvkgLflAGqinGteGYeEaaaqGllAGinaarkakgk 391
                 +++iy++g+stslp++vq +++rs++G+ena+ivrpGyaieyd++dpr+l++tLe+k ++gLf+AGqinGt+GYeEaaaqGllAG+naar +++k
  CTQ26179.1 304 SNEIYPNGISTSLPFDVQMQIVRSMQGMENARIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARFSAEK 398
                 ******************************************************************************************98877 PP

>> GIDA_assoc  GidA associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.0   0.8   2.3e-82   3.2e-79       3     210 .]     403     616 ..     401     616 .. 0.92

  Alignments for each domain:
  == domain 1  score: 266.0 bits;  conditional E-value: 2.3e-82
                 --TTT-HHHHHHHHHHHH--SS-B-CCCB--TTTCCC-CCCHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHH......HH CS
  GIDA_assoc   3 lkRseaYiGVLiDDLvtkgvkEPYRmfTSRaEyRlllRaDnAdlRLtekgrelGlvseeryekfeekkeeieelkellkstklkseewkkl.....lek 96 
                  +R++aY+GVL+DDL+t g+kEPYRmfTSRaEyRl+lR+DnAdlRLte+grelGlv++er+++++ek e+ie+++++lkst++++++ +++     l++
  CTQ26179.1 403 PRRDQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEQGRELGLVDDERWARYNEKLESIERERQRLKSTWVNPQAESANevnahLTA 501
                 68*********************************************************************************4444443322333555 PP

                 HT....EHHHHCTTST--HHHHHCCHHHHHHHSCHH.HHHHHHHHHCHHHHHHHHHHCHHHHHHHTSB--TTS-CCCSTT--CHHHHHHHHH--SCHHH CS
  GIDA_assoc  97 keskklslaellkrpevkledlleelpeeeeeseee.leqveieakYegyiekqeeeieklkkeenlkipedldYskikgLskearekLkkvrPetlgq 194
                   s++ s  +ll+rpe+++e+l++  p +   ++++ +eqvei++kYegyi++q++eiek +++en+ +p++ldY++++gLs+e++ kL++++P+++gq
  CTQ26179.1 502 PLSREASGEDLLRRPEMTYEQLVQLSPFTPGLEDRQaAEQVEIQVKYEGYIARQQDEIEKQQRNENTLLPATLDYRQVTGLSNEVIAKLNDHKPSSIGQ 600
                 55666699**************999999988888888************************************************************** PP

                 HTTSTTS-HHHHHHHH CS
  GIDA_assoc 195 AsrisGvtpaaisvLl 210
                 AsrisG+tpaais+Ll
  CTQ26179.1 601 ASRISGITPAAISILL 616
                 *************995 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.3   1.3e-07   0.00017       1      30 [.       8      37 ..       8      48 .. 0.92
   2 !   11.3   0.2   9.6e-05      0.13     148     202 ..     108     158 ..      62     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.3e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvek 30
                   Dvi+iG+G AG  AA++aa+ G+++++++ 
     CTQ26179.1  8 DVIIIGGGHAGTEAAMAAARMGQQTLLLTH 37
                   9*************************9975 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 9.6e-05
                    HHHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE----- CS
  FAD_binding_2 148 vesarkag.vdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGf 202
                    v++a++++   + ++ ++++Live++rv+Gav +        ++rakavvl+ g f
     CTQ26179.1 108 VRTALENQpNLMIFQQAVEDLIVENDRVVGAVTQ-----MGLKFRAKAVVLTVGTF 158
                    44444444455678999**************999.....446699******99987 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   3.9   1.2e-10   1.6e-07       1     139 [.       8     151 ..       8     154 .. 0.67
   2 ?   -2.0   0.1       1.3   1.8e+03     185     223 ..     458     499 ..     423     589 .. 0.62

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.2e-10
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLve.ergvlGGlltsglvatdignkaee..qvvtgiareflerlrq....rggarlkkrskw..n.....t 83 
                   Dv+++GGg aG+ AA+aAar+G+++lL+  + + lG ++ + + + + + +  +   + +g++ + +++        +++      k   +      
    CTQ26179.1   8 DVIIIGGGHAGTEAAMAAARMGQQTLLLThNIDTLGQMSCNPAIGGIGKGHLVKevDALGGLMAKAIDQAGIqfriLNAS------KGpaVratraQ 98 
                   9************************9887255788777777776666665555557777777777777764322221111......11111222224 PP

  FAD_oxidored  84 fepevakavleemlaeagvtvllntrlvevekegkriesvtveskegrktirAkvf 139
                    +   +++++   l+++   +++++ +++ ++e++r+ + +++    + ++rAk +
    CTQ26179.1  99 ADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQM---GLKFRAKAV 151
                   77777777777777555555677888888888888988888865...677777765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
  FAD_oxidored 185 eedekvqaynkrlcltskpenrvpfe...kkpegydparyel 223
                    +de++ +yn++l   +++ +r++ +    ++e+ ++ + +l
    CTQ26179.1 458 VDDERWARYNEKLESIERERQRLKSTwvnPQAESANEVNAHL 499
                   467788888888777777766665553333333333333333 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   1.6   5.2e-08   7.2e-05       1      58 [.       7     107 ..       7     165 .. 0.52

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5.2e-08
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH......................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................... RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias......................................... 57 
                  +dv++iGgG+AG++aa+ +a+ g +++l+   +   +g+++  +a+ g+++ + + +                                         
   CTQ26179.1   7 FDVIIIGGGHAGTEAAMAAARMGQQTLLL-THNIDTLGQMSCNPAIGGIGKGHLVKEvdalgglmakaidqagiqfrilnaskgpavratraqadrvl 103
                  69***********************9999.44444444555555555544444322244444444433333333333333666666666665555444 PP

                  ...H CS
                  ...x RF
  Pyr_redox_2  58 ...e 58 
                      
   CTQ26179.1 104 yrqA 107
                  4441 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   1.0   8.1e-08   0.00011      29      69 ..       7      47 ..       4     146 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 8.1e-08
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDvrparleqles 69
                   v++iGgG aG++A+ +a+++g+++ +l  ++++l q++ 
   CTQ26179.1  7 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSC 47
                 579*******************************9999865 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   1.9e-06    0.0026       1      32 [.       7      38 ..       7      48 .. 0.91
   2 ?   -0.4   0.0      0.26   3.6e+02     116     163 ..     109     156 ..      94     158 .. 0.83
   3 ?    3.3   0.0     0.019        27     369     391 ..     356     375 ..     352     389 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.9e-06
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVllleka 32
                 +dvi+iGgG AG  aA++aa+ g+++lll ++
   CTQ26179.1  7 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHN 38
                 59**************************9987 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.26
                  HHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 116 lkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                   ++l+++   +  +++v+++  e+d+++   t+ + +++a+++vl++G
   CTQ26179.1 109 RTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVG 156
                  5566666666778999**********999999999***********99 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.019
                  T-BBTTSTTEEE-GGGBSEEE-T CS
  HI0933_like 369 tmeskkvpgLffaGEvlDvegvt 391
                  t+esk ++gLffaG +   +g t
   CTQ26179.1 356 TLESKFIQGLFFAGQI---NGTT 375
                  99************76...4444 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00072         1       1      26 [.       8      35 ..       8      51 .. 0.85
   2 !    9.5   0.0   0.00046      0.64     139     207 ..      96     163 ..      55     216 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00072
                EEEEECTSHHHHHHHHHHHHTT..EEEE CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtll 26
                dv+iiGGG +G  +A+++ar g  ++ll
  CTQ26179.1  8 DVIIIGGGHAGTEAAMAAARMGqqTLLL 35
                9*****************9989876666 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00046
                 TEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH.HH CS
         DAO 139 dtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsd.ll 207
                   +q+d   + +a++ a+e++   ++++  v++l  e+++v+g   +t+ g +++a+avV++ G + d ++
  CTQ26179.1  96 R-AQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGA--VTQmGLKFRAKAVVLTVGTFLDgKI 163
                 3.777788888888888888888888899****87777899999..8899*9965699******9987755 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   1.9   2.3e-05     0.032      19     139 ..       8     142 ..       3     152 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.3e-05
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT....TTTSTTBSEEEEETTT.....HHHHHHTT---E..EESSEEEE......SEHHHHH CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvailersvspGGGa....wlGGqlfsaivvrkpa.....kelLdelgikye..degdyvvv......kdaalft 100
                 Dv+i+G+G +G  aa   a+  + ++++l +++   G +      GG    ++v + +a      + +d+ gi++   +  ++  v      +d +l+ 
  CTQ26179.1   8 DVIIIGGGHAGTEAAMAAARM-GQQTLLLTHNIDTLGQMscnpAIGGIGKGHLVKEVDAlgglmAKAIDQAGIQFRilNASKGPAVratraqADRVLYR 105
                 9***************99999.99999999999877765222246888777777776663333345567777776422444444441122224566777 PP

                 HHHHHHHHTSTTEEEEESEEEEEEEEETBTEEEEEEEEE CS
        Thi4 101 stllskvlqlanvkllnavaveDlivregegvaGvvinw 139
                   + +++ +++n+ +++  aveDliv + ++v G v++ 
  CTQ26179.1 106 QAVRTALENQPNLMIFQQ-AVEDLIVEN-DRVVGAVTQM 142
                 77777777889**99985.89*****99.99***99986 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   2.3e-05     0.032       2      36 ..       9      45 ..       8      64 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.3e-05
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS..T CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll..r 36
                v+++GgG  g E+A a+a++g+++ ++  +   l   
  CTQ26179.1  9 VIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLgqM 45
                89********************996655544443244 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.5   0.00096       1.3       1      39 [.      11      49 ..      11      62 .. 0.86
   2 ?   -0.3   0.0      0.92   1.3e+03       8      51 ..      67     110 ..      64     122 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00096
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EEC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasye 39
                   I+G+G +G  aA ++a+ g + lll ++ ++ G+++++ 
     CTQ26179.1 11 IIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNP 49
                   9**********************9999888888888775 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.92
                    HHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS--- CS
  NAD_binding_8   8 GlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahi 51 
                    G ++A ++ +ag++  +l ++ ++  ra++++ + v +   +++
     CTQ26179.1  67 GGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRT 110
                    56789999999*******99999999999999888766666665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00034      0.47     167     194 ..       9      36 ..       4      50 .. 0.69
   2 ?   -3.1   0.0       2.5   3.5e+03     101     135 ..     122     158 ..      73     160 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00034
  Pyr_redox_3 167 vvViGgknSavDaAlelvrkgaeVtvvt 194
                  v++iGg+  + +aA+  +r+g++  ++t
   CTQ26179.1   9 VIIIGGGHAGTEAAMAAARMGQQTLLLT 36 
                  6666666666666666666666665555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.5
  Pyr_redox_3 101 feeVesvkkedeg..fevetsketyeAkkviiAtGef 135
                  ++ Ve++  e++     v++   +++Ak v++  G f
   CTQ26179.1 122 QQAVEDLIVENDRvvGAVTQMGLKFRAKAVVLTVGTF 158
                  3444443332222113455555577788888777776 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4       1.1   1.5e+03       2      17 ..      11      26 ..      10      36 .. 0.79
   2 ?   11.6   0.3   0.00014       0.2     104     155 ..     104     157 ..      97     158 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.1
  NAD_binding_9  2 ivGaGprGlavlerLl 17
                   i+G+G +G+ ++ + +
     CTQ26179.1 11 IIGGGHAGTEAAMAAA 26
                   9*******98887655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00014
  NAD_binding_9 104 feellarl.pegvtvevhraevvdleeradgq.avlladgaslaadaVvLAlGh 155
                    ++++++++ +++ ++ ++++ v+dl  ++d++   +++ g +++a+aVvL++G 
     CTQ26179.1 104 YRQAVRTAlENQPNLMIFQQAVEDLIVENDRVvGAVTQMGLKFRAKAVVLTVGT 157
                    566666665888899***************9757999****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 4468.03
//
Query:       CTQ26180.1  [L=146]
Description: FMN-binding protein MioC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-23   83.2   0.0    2.2e-23   83.1   0.0    1.0  1  Flavodoxin_1  Flavodoxin
      0.008   16.4   0.0      0.012   15.9   0.0    1.3  1  Flavodoxin_5  Flavodoxin domain


Domain annotation for each model (and alignments):
>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   2.4e-27   2.2e-23       2     143 .]       7     138 ..       6     138 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 2.4e-27
                   EEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEECT CS
  Flavodoxin_1   2 lYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGds 98 
                   + gS+ G++e +A++lae+l+e+g ++++ +   +d    ++ ++ ++l++ sT+g Gd+p+n   +f+d l++k     + dls vrf  +g G++
    CTQ26180.1   7 ISGSTLGSAEYVAEHLAEKLEEAGYSTEIQHGPLVD----DLQAQGIWLIISSTHGAGDIPDNLV-PFYDALQEK-----QADLSAVRFGAIGIGSR 93 
                   679**********************99999999999....89***********************.999999999.....689************** PP

                   TSSSTTHHHHHHHHHHHHTTCEEESSSEEEETTSTHGHHHHHHHH CS
  Flavodoxin_1  99 ayenFcaagkkldekleelGaerllkllegdednqegqeeafrkW 143
                   +y  Fc a++kl+  l++ Ga+ ++++l+++   +e  e+  + W
    CTQ26180.1  94 EYDTFCGAIDKLEAALKACGAKQIGETLKINVLEHEIPEDPAEIW 138
                   *****************************9988766666666555 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-06     0.012       5      67 ..       9      71 ..       6      97 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-06
  Flavodoxin_5  5 sSrdGqTkkiaeriaeelreegelvdvedvekesedlesydavvigasvyy.gkllpelakFve 67
                   S+ G+ +++ae++ae+l+e+g +++++   +  +dl+     +i++s +  g+++ +l  F +
    CTQ26180.1  9 GSTLGSAEYVAEHLAEKLEEAGYSTEIQHG-PLVDDLQAQGIWLIISSTHGaGDIPDNLVPFYD 71
                  6999*************************8.6999***999999****9963667666666644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1127.58
//
Query:       CTQ26181.1  [L=152]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-17   63.8   0.1    1.8e-17   63.0   0.1    1.4  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
      6e-13   48.4   0.0    1.4e-12   47.2   0.0    1.7  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    7.6e-13   47.8   0.0    1.6e-12   46.8   0.0    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
    5.5e-06   26.3   0.1    1.2e-05   25.3   0.0    1.5  2  HTH_20          Helix-turn-helix domain
    9.4e-05   22.3   0.0    0.00022   21.1   0.0    1.6  1  HTH_11          HTH domain
    0.00045   20.0   0.0    0.00081   19.2   0.0    1.4  1  MarR_2          MarR family
     0.0098   16.0   0.2        0.1   12.8   0.0    2.1  2  B-block_TFIIIC  B-block binding subunit of TFIIIC
  ------ inclusion threshold ------
      0.013   15.2   0.1      0.088   12.5   0.0    2.2  2  HTH_41          Helix-turn-helix domain
      0.045   13.9   0.0      0.093   12.9   0.0    1.5  1  HTH_34          Winged helix DNA-binding domain
      0.054   13.4   0.0      0.098   12.5   0.0    1.4  1  HTH_5           Bacterial regulatory protein, arsR family
       0.14   11.9   0.0       0.26   11.1   0.0    1.4  1  HTH_IclR        IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.1   1.1e-20   1.8e-17       5      74 ..      76     143 ..      72     144 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 1.1e-20
                     E-GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEE CS
  AsnC_trans_reg   5 lepghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivle 74 
                     l++ +  ++ ++ ++l+ l+eV+e+y++tG y++++kv++++++al+++l +k+++++++++tet+ivl+
      CTQ26181.1  76 LKSAK--DYPSALARLESLEEVTEAYYTTGHYSIFIKVMCKSIDALQQVLINKIQTIDEIQSTETLIVLQ 143
                     55444..89999********************************************************97 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   8.7e-16   1.4e-12       1      42 []       6      47 ..       6      47 .. 0.97

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 8.7e-16
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   +D +Dr IL+aL+++aR+ yaeLA++  +S+ t++ Rv++++
     CTQ26181.1  6 IDNLDRGILDALMANARTAYAELAKQFSVSPGTIHVRVEKMK 47
                   69**************************************95 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   9.6e-16   1.6e-12       2      48 .]       7      53 ..       6      53 .. 0.97

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 9.6e-16
      HTH_24  2 detdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                d +dr IL +L++n+r+ ++eLA++  +Sp+t++ r+++++++G+I+
  CTQ26181.1  7 DNLDRGILDALMANARTAYAELAKQFSVSPGTIHVRVEKMKQAGIIT 53
                899*******************************************6 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   7.3e-09   1.2e-05      13      58 ..      11      56 ..       6      57 .. 0.94
   2 ?   -3.3   0.0       6.2     1e+04      42      50 ..      86      94 ..      84      96 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 7.3e-09
                HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20 13 rrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvr 58
                r+il+aL+ ++    +ela+++++s+ t++ +++++ +ag++++ r
  CTQ26181.1 11 RGILDALMANARTAYAELAKQFSVSPGTIHVRVEKMKQAGIITGAR 56
                89****************************************9977 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.2
                HHHHHHHHH CS
      HTH_20 42 syHLrvLee 50
                  +L+ Lee
  CTQ26181.1 86 LARLESLEE 94
                457777777 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.4e-07   0.00022      19      54 ..      26      66 ..      12      67 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.4e-07
      HTH_11 19 eeLAeeLnvSrrtvrrdIkaLeelg....vpIesepgr.GY 54
                +eLA++++vS  t++ ++++++ +g    ++I+ +p++ GY
  CTQ26181.1 26 AELAKQFSVSPGTIHVRVEKMKQAGiitgARIDVSPKQlGY 66
                79***********************************9999 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     5e-07   0.00081       8      52 ..      11      53 ..       5      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5e-07
                HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                + +L aL ++ +   + +ela+ + +s+++++ +++++ +aG ++
  CTQ26181.1 11 RGILDALMANAR--TAYAELAKQFSVSPGTIHVRVEKMKQAGIIT 53
                779999999998..8***************************996 PP

>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   6.1e-05       0.1      23      60 ..      27      63 ..      23      66 .. 0.91
   2 ?    0.8   0.3      0.34   5.5e+02      39      64 ..     116     138 ..     110     144 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.1e-05
  B-block_TFIIIC 23 dLakeskqdprslfyrlksLekkgLIvkqsiidsatkk 60
                    +Lak +  +p  ++ r+ ++++ g I++  i d+ +k+
      CTQ26181.1 27 ELAKQFSVSPGTIHVRVEKMKQAGIITGARI-DVSPKQ 63
                    89**************************999.887775 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.34
  B-block_TFIIIC  39 lksLekkgLIvkqsiidsatkksist 64 
                     +++L++  LI k+++  + +++s+ t
      CTQ26181.1 116 IDALQQ-VLINKIQT--IDEIQSTET 138
                     677777.89999999..455555544 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.4e-05     0.088      11      37 ..      27      53 ..      24      56 .. 0.93
   2 ?   -0.7   0.0      0.71   1.2e+03       4      12 ..     125     133 ..     125     139 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.4e-05
      HTH_41 11 elakeleLSvGlvQkALklLeddkais 37
                elak++++S G++   +++++++++i+
  CTQ26181.1 27 ELAKQFSVSPGTIHVRVEKMKQAGIIT 53
                89***********************97 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.71
      HTH_41   4 dRlktIeel 12 
                 ++++tI+e+
  CTQ26181.1 125 NKIQTIDEI 133
                 799***997 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.7e-05     0.093       5      45 ..      13      53 ..      11      63 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.7e-05
      HTH_34  5 vlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYie 45
                +l  L+++ +  ++el ++ +++ g + v ++k+++ag i+
  CTQ26181.1 13 ILDALMANARTAYAELAKQFSVSPGTIHVRVEKMKQAGIIT 53
                8999**********************************987 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     6e-05     0.098       7      45 ..      13      52 ..      11      53 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6e-05
                HHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  7 ILklLae.gelcvcelaeelglsqstvShHLkkLreaGLV 45
                IL +L+    +   ela+++ +s++t+     k+++aG++
  CTQ26181.1 13 ILDALMAnARTAYAELAKQFSVSPGTIHVRVEKMKQAGII 52
                88888884557778************************99 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00016      0.26       8      47 ..      13      51 ..      10      54 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
                HHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
    HTH_IclR  8 iLdalaeapqeltlselArrtglpkStvhRlLqtLvelGy 47
                iLdal + ++    +elA+++ +++ t h  +  + + G+
  CTQ26181.1 13 ILDALMANART-AYAELAKQFSVSPGTIHVRVEKMKQAGI 51
                9*********8.9****************88777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1122.12
//
Query:       CTQ26182.1  [L=330]
Description: asparagine synthetase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-94  316.5   0.0    1.3e-94  316.3   0.0    1.1  1  AsnA           Aspartate-ammonia ligase
    0.00025   20.2   0.0     0.0044   16.1   0.0    2.0  2  tRNA-synt_2    tRNA synthetases class II (D, K and N)
  ------ inclusion threshold ------
      0.038   13.9   0.0      0.061   13.2   0.0    1.2  1  DUF5569        Family of unknown function (DUF5569)
      0.069   12.5   0.0       0.11   11.9   0.0    1.2  1  Metallophos_3  Metallophosphoesterase, calcineurin superfamil


Domain annotation for each model (and alignments):
>> AsnA  Aspartate-ammonia ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.3   0.0   2.8e-98   1.3e-94       1     226 [.       9     244 ..       9     245 .. 0.99

  Alignments for each domain:
  == domain 1  score: 316.3 bits;  conditional E-value: 2.8e-98
                 HHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST----EE--TST.T--EEE-S--TTHHHHHHHHTT--TT-EEEEEEEEE-TT-S.-- CS
        AsnA   1 qkaiklvkdlfeeelakelnltrvsaPllvekesglnDnLnGverpvsfkvkel.eeeaevvhslakWkRlalkkygfkvgeGlytdmnaiRkdee.ld 97 
                 q++i++vk++f+++l+++l l++v+aP+l + ++g++DnL+G+e++v++kvk+l ++++evvhslakWkR++l +++f++geGlyt+m+a+R de+ l 
  CTQ26182.1   9 QRQISFVKSHFSRQLEEKLGLIEVQAPILSRVGDGTQDNLSGCEKAVQVKVKTLpDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDrLT 107
                 689*************************************************988***************************************998** PP

                 SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHHHHHHHHHHHHHC.-----S-SS-EEEEHHHHHHHSTSS-HHHHHHHHHHHHSEEEEE--SSB- CS
        AsnA  98 nlhsvyvdqwDwEkviekeernlefLketvkkiykalketekevaekypelkkklpeeitfitseeledkyPdltpkeREeaivkeygavfligiGgkl 196
                  +hsvyvdqwDwE+v+ +eer++ +Lk+tv++iy+ +k+te +v++++  l+++lpe+i+f++s+el+++yP+l++k RE+ai+ke gavfligiGgkl
  CTQ26182.1 108 PIHSVYVDQWDWERVMGDEERHVGTLKATVEAIYAGIKATELAVSQEF-GLTPFLPEQIHFVHSQELLSRYPELDAKGRERAIAKELGAVFLIGIGGKL 205
                 ************************************************.89************************************************ PP

                 SSSSBSS---TTTB--S.........SEEEEEEEETTTT CS
        AsnA 197 ksgekhdgRapdYDdws.........LngDilvynevld 226
                 ++g++hd+RapdYDdws         LngDilv+n+vl+
  CTQ26182.1 206 ADGKRHDVRAPDYDDWStevsegfagLNGDILVWNPVLE 244
                 ************************************997 PP

>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.024   1.1e+02      28      58 ..      15      44 ..       3      59 .. 0.78
   2 !   16.1   0.0   9.9e-07    0.0044     251     308 ..     259     314 ..     242     316 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.024
                 HHHHHHHHHHHT.T-EE----SEESS--SSSS CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 28 vtkavrkyleen.gfieietPiLsksdteega 58
                 v + + + lee+ g ie++ PiLs+   ++g 
   CTQ26182.1 15 VKSHFSRQLEEKlGLIEVQAPILSRV--GDGT 44
                 5556667777777**********998..4444 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 9.9e-07
                  HHHHHHHHHCCHH..SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCS CS
                  xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 251 eeleeklkskgld..eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdvi 308
                  e l+++l        +e + k++w   +l+  +p++ G g+G +Rl+mlll++++I +v+
   CTQ26182.1 259 EALKRQLA----LtgDEDRLKLEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLDHIGQVQ 314
                  33333333....23455799************************************9885 PP

>> DUF5569  Family of unknown function (DUF5569)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.4e-05     0.061      27      86 ..       8      69 ..       2      85 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
     DUF5569 27 kaknesWikshfsrlseeklatds.ta.sasssstapqpesgsgeasttvrletfttrqGeg 86
                k ++ s++kshfsr  eekl   + +a   s   + +q +    e +  v+++t+   q e+
  CTQ26182.1  8 KQRQISFVKSHFSRQLEEKLGLIEvQApILSRVGDGTQDNLSGCEKAVQVKVKTLPDAQFEV 69
                566679*************9654313304455556666666666888888888887777665 PP

>> Metallophos_3  Metallophosphoesterase, calcineurin superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.3e-05      0.11     121     162 ..     183     224 ..     161     227 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.3e-05
                    EE-SSEEEEETTTEEEEEE-SEEESS--BSSSS-EEEHHHHH CS
  Metallophos_3 121 kvvhesfaekeGevliaGmGGeivdgekeeefrLkYPaweve 162
                    k+ + ++a++ G v ++G+GG++ dg++++++   Y  w  e
     CTQ26182.1 183 KGRERAIAKELGAVFLIGIGGKLADGKRHDVRAPDYDDWSTE 224
                    566778999***************************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2618.78
//
Query:       CTQ26183.1  [L=482]
Description: putative von Willibrand factor containing protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-10   40.7   0.0    3.5e-10   39.7   0.0    1.4  1  VWA_CoxE  VWA domain containing CoxE-like protein
    4.2e-07   30.6   0.0    9.8e-07   29.4   0.0    1.6  1  VWA_2     von Willebrand factor type A domain
  ------ inclusion threshold ------
      0.013   15.6   0.0      0.023   14.9   0.0    1.5  1  DUF2201   VWA-like domain (DUF2201)


Domain annotation for each model (and alignments):
>> VWA_CoxE  VWA domain containing CoxE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   5.8e-14   3.5e-10      48     196 ..     308     457 ..     289     460 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 5.8e-14
    VWA_CoxE  48 vrrkprerkpr.elvllvDvSgSmaay.....saiflallhAllqqlprtevfaFdtrlvd..lTralrerDpaeaLarvsaavedlgGgTrigaalae 138
                 v r+  +++pr + +++vD SgSm  +      a+ lal++ +l+  +r  +++F++++v+  lT+++    +++a++ +s   +   GgT++++ +++
  CTQ26183.1 308 VTRQDFDEQPRgPFIVCVDTSGSMGGFneqcaKAFCLALMRIALADNRRCFIMLFSSEVVHyeLTSEIG---LEQAIRFLS---QRFRGGTDLASCFRA 400
                 44444333332279**********998322223566777777888888***********9633777776...99****999...78************* PP

    VWA_CoxE 139 flelvtrpaLsrravvvlvsDglergdreellaelarlvrrarrlvwlnplsdagtpg 196
                 ++e+ + p+   +a  v++sD+  +   +e+ a++ +l+r+  +     ++s +g+pg
  CTQ26183.1 401 IIERLQNPQ-WVDADAVVISDFIAQRLPDEVIAQVGELQRKHQHRFHAVAMSVHGKPG 457
                 ********9.7899999*********************99987777777776666665 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.6e-10   9.8e-07       2     106 ..     322     421 ..     321     422 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.6e-10
       VWA_2   2 vfvlDtSgSmrngdygptrleaakdaveallk.slp.gdrvglvtfsdgpevlipltkdkakilnalrnleak.gggtnlaaaLqlarkalkkrrkgek 97 
                 ++++DtSgSm++      + + ak++  al+  +l+ + r+ ++ fs+++  +  lt+    +++a+r l ++ +ggt+la+ ++   + l++ +  + 
  CTQ26183.1 322 IVCVDTSGSMGGF-----NEQCAKAFCLALMRiALAdNRRCFIMLFSSEVV-HYELTSE-IGLEQAIRFLSQRfRGGTDLASCFRAIIERLQNPQ-WVD 412
                 79**********9.....89************7777477********9975.5566664.45999999999999******************998.*** PP

       VWA_2  98 rvivlitDg 106
                 + +v+i+D 
  CTQ26183.1 413 ADAVVISDF 421
                 *******95 PP

>> DUF2201  VWA-like domain (DUF2201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   3.8e-06     0.023       2      78 ..     322     404 ..     321     446 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.8e-06
     DUF2201   2 vlavDtSgSi...kdkelarfaaeiadilrrleaevhvvavdeevqsvqrlep...aeklaelqltggGGTdlvpvlEavakl 78 
                 +++vDtSgS+   +++ ++ f+  + +i  + + +  ++ + +ev + +  ++   ++ ++ l+ + +GGTdl+  + a+++ 
  CTQ26183.1 322 IVCVDTSGSMggfNEQCAKAFCLALMRIALADNRRCFIMLFSSEVVHYELTSEiglEQAIRFLSQRFRGGTDLASCFRAIIER 404
                 689******84435788999************************99998888878889999999999*******999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3556.86
//
Query:       CTQ26184.1  [L=499]
Description: fused regulatory ATPase variant A; conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-25   89.6   0.0    3.1e-25   88.8   0.0    1.4  1  AAA_5            AAA domain (dynein-related subfamily)
      2e-23   82.0   0.5    5.5e-23   80.6   0.0    2.0  2  AAA_lid_8        AAA lid domain
    6.2e-22   77.4   3.7    2.7e-21   75.4   3.7    2.2  1  DUF3763          Protein of unknown function (DUF3763)
     0.0002   21.1   0.0     0.0039   16.9   0.0    2.4  1  Sigma54_activat  Sigma-54 interaction domain
     0.0002   20.8   0.2     0.0029   17.0   0.0    2.5  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00029   20.7   0.0    0.00062   19.6   0.0    1.6  1  AAA_3            ATPase family associated with various cellul
     0.0021   18.5   0.0     0.0048   17.3   0.0    1.7  1  AAA              ATPase family associated with various cellul
     0.0035   17.7   0.1      0.012   16.0   0.0    2.0  2  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.015   15.0   0.0       0.13   11.9   0.0    2.1  2  IstB_IS21        IstB-like ATP binding protein
      0.022   14.9   0.0       0.21   11.7   0.0    2.1  2  AAA_2            AAA domain (Cdc48 subfamily)
      0.042   12.8   0.0          2    7.3   0.0    2.1  2  AAA_PrkA         PrkA AAA domain


Domain annotation for each model (and alignments):
>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   0.0   1.9e-28   3.1e-25       1     138 []      41     171 ..      41     171 .. 0.93

  Alignments for each domain:
  == domain 1  score: 88.8 bits;  conditional E-value: 1.9e-28
                 EEEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrlll 96 
                 +v+L+GppG++Ks +a+rl+ a+ +++ +++++tr+ t+e+++g+++i+  + + +   l+ a+   e+ei++lDE+++a +++ln+Ll+ ++er+++ 
  CTQ26184.1  41 SVFLLGPPGIAKSLIARRLKFAFqQARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLT-AGYlpEAEIVFLDEIWKAGPAILNTLLTAINERHFR- 137
                 59**********************************************8777777788888.44479*******************************. PP

                 .-SSSEEE---......-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5  97 eeggelvkaknddllerfrviatanpldrslnelspalrsRf 138
                  +g +++k +         ++a++n+l+ +  +  +al++R+
  CTQ26184.1 138 -NGAHEEKIPM------RLLVAASNELP-EADSSLEALYDRM 171
                 .******9999......89*********.777779******7 PP

>> AAA_lid_8  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   3.4e-26   5.5e-23       2      67 ..     228     293 ..     227     298 .. 0.94
   2 ?   -2.1   0.1       2.3   3.7e+03      27      48 ..     307     328 ..     306     336 .. 0.86

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 3.4e-26
   AAA_lid_8   2 vlelileiknkleeeeeaiyvSDRRwkkivkllkasAylngrdevnlsDllllkhclWnepeqkek 67 
                 v+eli++++++l+   +a yvSDRRwkk+++ll+asA+++grd++ ++Dl+llk+clW++ e+ + 
  CTQ26184.1 228 VFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDSIAPIDLILLKDCLWHNVESMNL 293
                 89*********************************************************9998765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.3
   AAA_lid_8  27 wkkivkllkasAylngrdevnl 48 
                 w++ + l +  A+++ r +++ 
  CTQ26184.1 307 WQQQAMLTRLGAIVQRRIQIQQ 328
                 9999999999999999999875 PP

>> DUF3763  Protein of unknown function (DUF3763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   3.7   1.6e-24   2.7e-21       1      55 []     444     498 ..     444     498 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 1.6e-24
                 -HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH-- CS
     DUF3763   1 peewleqleeleqelrkqrslFhqhqphlFIekewlaaIEaSllqlseqleqlqq 55 
                 p+e+ +qle+l++e+++q+++F+++q++lFI+ ewl +IEaSl+++  q++q++q
  CTQ26184.1 444 PAEIRQQLEALDDEWHQQHNRFSEQQKCLFIPVEWLGRIEASLQDVGAQIKQAKQ 498
                 5799*************************************************97 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.4e-06    0.0039      19     148 ..      36     160 ..      24     180 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.4e-06
                      CTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEE.ETTTS-TTCHHH.HHHE.BSSSSSTTTSS-BEHHHHHTTTSEEEEETGGGS-HHH CS
  Sigma54_activat  19 aktdlsvlitGesGtGKellaraiheaskrkekpfvav.ncaaipeelles.eLFG.hekGaFtGAekekkGlfekadgGtlfLDeigelplel 109
                      a +  sv+++G  G  K+l+ar +  a +++++ f  +    ++pee++   ++     +G +   e+  +G++ +a+  ++fLDei +  +++
       CTQ26184.1  36 ALSGESVFLLGPPGIAKSLIARRLKFAFQQARA-FEYLmTRFSTPEEVFGPlSIQAlKDEGRY---ERLTAGYLPEAE--IVFLDEIWKAGPAI 123
                      556667788888888888888877665555444.33330333555555433011110223333...233458887776..89************ PP

                      HHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHH CS
  Sigma54_activat 110 QekLlrvlqegevervGsskeikvdvriiaatnedleea 148
                       + Ll++++e++++  G++ e k+ +r+++a++++l ea
       CTQ26184.1 124 LNTLLTAINERHFRN-GAH-EEKIPMRLLVAASNELPEA 160
                      *************87.544.4456666655555555443 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.8e-06    0.0029       8      50 ..      25      67 ..      20      78 .. 0.84
   2 ?    0.7   0.0      0.17   2.8e+02     109     157 ..     110     155 ..      95     165 .. 0.75
   3 ?   -3.0   0.1       2.4   3.8e+03     171     198 ..     302     329 ..     294     339 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.8e-06
  Mg_chelatase  8 qeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllppls 50
                  +++a r   +aa  g +++l+GppG  K+++a+rl+  + +  
    CTQ26184.1 25 RSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQQAR 67
                  5688899999*************************97766655 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.17
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamN 157
                   ++fLDE+ +    +l++L + +++++ +    +++ + p r  lvaa N
    CTQ26184.1 110 IVFLDEIWKAGPAILNTLLTAINERHFR--NGAHEEKIPMR-LLVAASN 155
                   89****************9999888754..34444444554.3566666 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.4
  Mg_chelatase 171 ctcsekeierYlsklsgplldRidlqve 198
                    tc++ +++  l++l + +  Ri++q +
    CTQ26184.1 302 MTCHAWQQQAMLTRLGAIVQRRIQIQQQ 329
                   5677777888888888888888888765 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.8e-07   0.00062       2     111 ..      42     156 ..      41     173 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.8e-07
       AAA_3   2 vllegvPGlaktllvkalakaldle.fkriqftpdllPsdilGtevfe...ekekefefkkGpvf.anllladeinrappktqsalleameerqvtveg 95 
                 v+l g PG+ak l+++ l  a++        +t    P ++ G   ++   ++ +  ++++G +  a++++ dei +a p +  +ll a++er+   + 
  CTQ26184.1  42 VFLLGPPGIAKSLIARRLKFAFQQArAFEYLMTRFSTPEEVFGPLSIQalkDEGRYERLTAGYLPeAEIVFLDEIWKAGPAILNTLLTAINERHFRNGA 140
                 678899**********9987765431344567888899***996544411044466678889885389******************************* PP

       AAA_3  96 ethklpepflvlatqn 111
                 +  k+p  +lv a ++
  CTQ26184.1 141 HEEKIPMRLLVAASNE 156
                 ********99988765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     3e-06    0.0048       1     128 [.      42     175 ..      42     179 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3e-06
                 EEEESSTTSSHHHHHHHHHHHHT.HEEEEEETTTCSSS.........STTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHHTTCCCHHH CS
         AAA   1 vllyGppGtGKTllakavakelg.vefleisgsellsk.........yvgesekkirelfkeakeka.......kpsilfiDEidalaksrsgseseee 82 
                 v l GppG+ K+l+a+ +   ++ ++ +e  ++++                      +l +e + ++       +  i+f+DEi + +++         
  CTQ26184.1  42 VFLLGPPGIAKSLIARRLKFAFQqARAFEYLMTRFSTPeevfgplsiQ---------ALKDEGRYERltagylpEAEIVFLDEIWKAGPAI-------- 123
                 5799************99888753444444444444222233333332.........33333333333344555559**********9999........ PP

                 HHHHHHHHHHHHHTTTS.........SSTEEEEEEESSGGGSTHHHH.S.TTSSEEE CS
         AAA  83 ervvnqLlteldgvkkk.........eskvivigatnrpdkldpall.r.gRfdrki 128
                    +n+Llt++++   +             ++++a+n+  + d+ l  + +R+ +++
  CTQ26184.1 124 ---LNTLLTAINERHFRngaheekipM--RLLVAASNELPEADSSLEaLyDRMLIRL 175
                 ...*********998888999888533..59999***97777766664458887765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   7.4e-06     0.012      12      60 ..      29      76 ..      22     172 .. 0.74
   2 ?   -2.1   0.0       2.7   4.3e+03      84      84 ..     175     175 ..     122     245 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.4e-06
      AAA_16 12 LlsalervrsgrpelvllsGesGvGKsslvrellralekdggif..lrgkc 60
                ++ +l ++ sg  e+v+l G++G+ Ks ++r+l+ a++++++ f  l +++
  CTQ26184.1 29 IRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQQARA-FeyLMTRF 76
                46666677777..89*******************88887742.22344443 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.7
      AAA_16  84 q 84 
                  
  CTQ26184.1 175 L 175
                 2 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.3e-05      0.13      47     117 ..      39     116 ..      28     138 .. 0.78
   2 ?    0.1   0.0      0.35   5.7e+02     146     168 ..     207     229 ..     200     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.3e-05
   IstB_IS21  47 kenivllGpsGvGKshla....ialgveavraglsvlfvrvedLveelkra..rrdgklaralkrll.kvdllilDdl 117
                  e++ llGp+G+ Ks +a     a+ ++ + + l ++f + e+++  l+++  +++g+++r  + +l +++++ lD++
  CTQ26184.1  39 GESVFLLGPPGIAKSLIArrlkFAFQQARAFEYLMTRFSTPEEVFGPLSIQalKDEGRYERLTAGYLpEAEIVFLDEI 116
                 58899**********9993322355555555788999********87765422899*****98876526799999997 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.35
   IstB_IS21 146 tsnlpfaewdevlgdatlatAil 168
                  s+ +f +w++ +g+ +l +A+ 
  CTQ26184.1 207 VSDEEFTQWQQQIGNIKLPDAVF 229
                 58889*************99986 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013      0.21       6     102 ..      42     130 ..      39     156 .. 0.83
   2 ?    0.4   0.0      0.38   6.1e+02     129     169 ..     439     483 ..     431     485 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS......EEEEETGGG-------------HHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG......ivllDEidKihpkessgadvSregVqrd 98 
                 + llgp g+ k+++a+ l    +  + +++    ++ + + eev   +s    + +g  ++   G      iv+lDEi K+ p            +++ 
  CTQ26184.1  42 VFLLGPPGIAKSLIARRLKFAFQ--QARAFE-YLMTRFSTPEEVFGPLSIQALKDEGRYERLTAGylpeaeIVFLDEIWKAGP-----------AILNT 126
                 66889999*99999999976665..455555.559999999******************999999****************99...........77777 PP

                 HHHH CS
       AAA_2  99 LLqi 102
                 LL  
  CTQ26184.1 127 LLTA 130
                 7665 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.38
                 -TTHHHHTTTS-S...TTTTSGGG--HHHHHHTT--H.HHHTT-- CS
       AAA_2 129 fgsskisdesrsk...eeeeekkkeeveeelkkglip.EllgRlp 169
                  + + +++ +++    ++e ++++++  e+ k  +ip E lgR++
  CTQ26184.1 439 AQENMPAEIRQQLealDDEWHQQHNRFSEQQKCLFIPvEWLGRIE 483
                 4555554433333566778888999999999************97 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.025        40      91     115 ..      42      66 ..      36      99 .. 0.82
   2 ?    7.3   0.0    0.0012         2     237     303 ..     111     172 ..     103     176 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.025
    AAA_PrkA  91 lyllGPvggGksslverlkklleaa 115
                 ++llGP g  ks ++ rlk ++++a
  CTQ26184.1  42 VFLLGPPGIAKSLIARRLKFAFQQA 66 
                 69*****************999887 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0012
    AAA_PrkA 237 lefvemfkadikvlhplltatqegnyksteklslipfdgiilahsnesewkkfksnkknealldriv 303
                 + + e++ka   +l +llta  e++++   +   ip+  +++a sne      +++   eal+dr++
  CTQ26184.1 111 VFLDEIWKAGPAILNTLLTAINERHFRNGAHEEKIPMR-LLVAASNELP----EADSSLEALYDRML 172
                 55569***********************9999999985.8899999964....56777788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3461.05
//
Query:       CTQ26185.1  [L=622]
Description: potassium transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.7e-209  694.5  25.1     1e-208  694.3  25.1    1.0  1  K_trans          K+ potassium transporter


Domain annotation for each model (and alignments):
>> K_trans  K+ potassium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  694.3  25.1  5.6e-213    1e-208       2     534 .]      14     544 ..      13     544 .. 0.99

  Alignments for each domain:
  == domain 1  score: 694.3 bits;  conditional E-value: 5.6e-213
     K_trans   2 lqalgvvygdigtSPLYvlksif.eakatepseedilGvlSlifwtLilivtvkYviivlradnkgeGGilaLlaliaslkkskkkakwlllilaliGa 99 
                 l+a+gvvygdigtSPLY+l++++  + +  +++++++G lSlifw Li++v++kY+++v+radn geGGil+L++l+   ++++ +++ +l+il+liG 
  CTQ26185.1  14 LAAIGVVYGDIGTSPLYTLRECLsGQFGFGVERDAVFGFLSLIFWLLIFTVSIKYITFVMRADNAGEGGILTLMSLAG--RNTSARMTSVLVILGLIGG 110
                 789********************99999*************************************************9..66666777777******** PP

     K_trans 100 alllgDgvltPaisvlsAveGlevaspsleklvvpislvilvlLFliQkfGtekigklfgpimliWflllavlGilnivkkpsvlkAlnPlyaiefllr 198
                 ++++g+ v+tPaisv+sA+eGle+++p+l++++vpis+++l+lLF+iQk+Gt  +gklf+pimliWflllavlG+ +i+ +p+vl+AlnP++a++f+l+
  CTQ26185.1 111 SFFYGEVVITPAISVMSAIEGLEIIAPQLDTWIVPISIIVLTLLFVIQKHGTGMVGKLFAPIMLIWFLLLAVLGARSIYANPEVLQALNPYWAVHFFLQ 209
                 *************************************************************************************************** PP

     K_trans 199 nklagflvLgavlLavTGaEaLyaDlGhfgkkpirlawlllvlpaLllnYlGQgalllknpeavsnpfyelipealllpllvlatlatiiASQalIsgv 297
                  k+ +f++Lgav+L++TG+EaLyaD+Ghfgk pir+aw+ +vlp+L+lnY+GQgalllk+pea++npf+ l+pe++l+p+l++atlat+iASQa+Isgv
  CTQ26185.1 210 YKTVSFIALGAVVLSITGVEALYADMGHFGKLPIRVAWFSVVLPSLVLNYFGQGALLLKHPEAIKNPFFLLAPEWALIPMLIIATLATVIASQAVISGV 308
                 *************************************************************************************************** PP

     K_trans 298 FslvsqaiklgllPrlkvvhtsekeegqiYiplvNwllliavilvvlvFksssnlaaAYGlavtltmlittlllllvlvlvwklklilvllvlllflli 396
                 Fsl++qa++lg+l  ++++htse e+gqiYip +Nwll+++v++v++ F++ssnlaaAYG+avt+tm++t++l ++v+++ w++++++v l+l++fl+i
  CTQ26185.1 309 FSLTRQAVRLGYLSPMRIIHTSEMESGQIYIPFINWLLYVSVVIVIVSFEHSSNLAAAYGIAVTGTMVLTSILSATVARKNWHWNKLFVGLMLVAFLCI 407
                 *************************************************************************************************** PP

     K_trans 397 dllflsanlkKipeGgwvplllavvlllimltWkygrkkllekeaeeevpleellkllekkkvkrvpgtavflssaketvpavllhilkklkvlhervv 495
                 d+ ++sanl Ki++Ggw+pl l++v++++m+tWk  r +ll++++e+ ++le + ++lek+ + rvpgtav++s+a + +p +llh+lk++kvlherv+
  CTQ26185.1 408 DIPLFSANLDKIVSGGWLPLSLGMVMFTVMTTWKSERFRLLRRMHEHGNSLEAMISSLEKSPPVRVPGTAVYMSRALNVIPFALLHNLKHNKVLHERVI 506
                 *************************************************************************************************** PP

     K_trans 496 llsvktlevpkvpkeerveveklkseglvrvvvryGfme 534
                 ll+++t++ p+v++ +rv++e+l+ ++++rvv++yG++e
  CTQ26185.1 507 LLTLRTEDAPYVHNVRRVQIEQLS-PSFWRVVASYGWRE 544
                 ************************.***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4345.64
//
Query:       CTQ26186.1  [L=139]
Description: putative cytoplasmic sugar-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-48  162.0   0.3    1.1e-47  161.8   0.3    1.0  1  RbsD_FucU  RbsD / FucU transport protein family
     0.0027   17.8   0.2      0.027   14.6   0.1    2.0  2  NitrOD5    Nitrosopumilus output domain 5
  ------ inclusion threshold ------
       0.12   12.6   0.6       0.23   11.7   0.6    1.4  1  Coat_F     Coat F domain


Domain annotation for each model (and alignments):
>> RbsD_FucU  RbsD / FucU transport protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.8   0.3   1.8e-51   1.1e-47       1     134 []       1     138 [.       1     138 [. 0.95

  Alignments for each domain:
  == domain 1  score: 161.8 bits;  conditional E-value: 1.8e-51
                 TTSSTTS-HHHHHHHHH--TT-EEEEE-TTS-HHCCSCEEE.-CBTTBS-HHHHHHHHHCTS-EEEEEEETCHHHHTHHHHHHHHHHCCCCCC....-- CS
   RbsD_FucU   1 mkksgilnpeLlkvlaelGHgDeiviaDaglPipsgveridlalragvpsfldvleavlselpvekvivaeevkeenpevleelkellakaee....ek 95 
                 mkk ++ln+++++v+++lGH+D++v++DaglP+p+ ++rid+al++gvpsf++vle+v++e++ve++++aee+k++np+++++l ++l++ ++    + 
  CTQ26186.1   1 MKKGTVLNADISAVISRLGHTDTLVVCDAGLPVPRSSTRIDMALTQGVPSFMQVLEVVTTEMQVEAAVIAEEIKTNNPQLHATLLTHLEQLQQhqgnTI 99 
                 9***********************************************************************************999998776544445 PP

                 -EEEE-HHHHHHHGGGCSEEEE-S--STT--EEEEE--- CS
   RbsD_FucU  96 eieeveheefkerakkakavvrTGEttpYaniiLkkGVv 134
                 ei++ +he+fk++++++ av+r+GE++p+aniiL +GV+
  CTQ26186.1 100 EIRYTSHEQFKKQTADSQAVIRSGECSPFANIILCAGVT 138
                 5************************************96 PP

>> NitrOD5  Nitrosopumilus output domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.048   2.9e+02      12      29 ..      41      58 ..      37      68 .. 0.75
   2 !   14.6   0.1   4.5e-06     0.027       9      51 ..      67     112 ..      59     116 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.048
     NitrOD5 12 kealkkvdPallkiLevh 29
                  al +  P++ ++Lev 
  CTQ26186.1 41 DMALTQGVPSFMQVLEVV 58
                56889999********85 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 4.5e-06
     NitrOD5   9 kavkealkkvdPallkiLevhLk...akankglelayedPkkFkea 51 
                 + + e +k  +P+l ++L  hL+    ++++++e+ y   ++Fk+ 
  CTQ26186.1  67 AVIAEEIKTNNPQLHATLLTHLEqlqQHQGNTIEIRYTSHEQFKKQ 112
                 5578999**************8622257899************986 PP

>> Coat_F  Coat F domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   3.9e-05      0.23      27      49 ..      75      97 ..      72     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.9e-05
      Coat_F 27 asnpelRqtlkqilneeiemqee 49
                ++np+l++tl ++l + +++q +
  CTQ26186.1 75 TNNPQLHATLLTHLEQLQQHQGN 97
                79*******************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1104.16
//
Query:       CTQ26187.1  [L=501]
Description: fused D-ribose transporter subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-56  188.9   0.3    3.3e-28   98.9   0.1    2.2  2  ABC_tran        ABC transporter
    1.3e-07   31.8   0.1      0.012   15.4   0.0    2.9  3  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    9.1e-05   22.0   0.4      0.028   13.9   1.2    2.9  2  SMC_N           RecF/RecN/SMC N terminal domain
    0.00045   20.2   0.2      0.025   14.5   0.1    2.5  2  RsgA_GTPase     RsgA GTPase
     0.0021   17.8   6.7     0.0047   16.7   0.4    3.0  3  AAA_30          AAA domain
     0.0057   16.4   0.4      0.018   14.8   0.1    2.0  2  AAA_29          P-loop containing region of AAA domain
     0.0062   16.5   0.6      0.014   15.4   0.1    1.8  2  Ploopntkinase3  P-loop Nucleotide Kinase3
     0.0064   15.3   2.8       0.27   10.0   0.1    3.2  3  ABC_ATPase      Predicted ATPase of the ABC class
  ------ inclusion threshold ------
       0.01   16.1   1.6        0.7   10.2   0.1    3.3  4  AAA_22          AAA domain
      0.017   15.2   0.1        0.4   10.8   0.1    2.5  2  MMR_HSR1        50S ribosome-binding GTPase
      0.018   15.1   2.2        1.1    9.2   0.2    2.6  2  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
      0.025   15.0   0.4        1.4    9.3   0.1    2.5  2  AAA_16          AAA ATPase domain
      0.038   13.7   0.0      0.052   13.3   0.0    1.2  1  AAA_15          AAA ATPase domain
       0.04   14.4   0.0      0.099   13.1   0.0    1.6  1  AAA_23          AAA domain
      0.073   12.3   0.8        7.4    5.8   0.0    2.3  2  Zeta_toxin      Zeta toxin
       0.23   11.2   0.1       0.23   11.2   0.1    1.9  2  MukB            MukB N-terminal
       0.27   11.6   0.6        2.1    8.8   0.0    2.8  2  RNA_helicase    RNA helicase
       0.54   10.7   2.8         57    4.1   0.0    3.7  3  AAA             ATPase family associated with various cellula


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.1   3.3e-31   3.3e-28       3     136 ..      22     169 ..      20     170 .. 0.95
   2 !   88.2   0.0   6.5e-28   6.5e-25       1     136 [.     268     423 ..     268     424 .. 0.94

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 3.3e-31
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren.................esde 83 
                    l++++g+++a+vGenGaGKSt++k+l+g ++ ++G++l+ gk+++   +++s ++ ig+++qe +l p+lt++en                 ++ +
  CTQ26187.1  22 GAALNVYAGRVMALVGENGAGKSTMMKVLTGIYTRDAGSLLWLGKETTFnGPKSSQEAGIGIIHQELNLIPQLTIAENiflgrefvnrfgkidwkQMYA 120
                 56799**************************************999998789999999********************************999988889 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 e++k+l+kl+l  + ++ v      LS G +q+v++a++l  ++k++++DEpt
  CTQ26187.1 121 EADKLLAKLNLRFTSQKLV----GDLSIGDQQMVEIAKVLSFESKVIIMDEPT 169
                 9************999999....*****************************9 PP

  == domain 2  score: 88.2 bits;  conditional E-value: 6.5e-28
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................ 79 
                 ++nv+++l++ge++++ G  GaG + L+k+l+g l   +G+++ldg+++ +  +   l + i +++++   + l  +++v+en                
  CTQ26187.1 268 VDNVTFTLRQGEILGVAGLMGAGRTELMKVLYGALPRSSGSVTLDGREVVTrSPQDGLANGIVYISEDrkrDGLVLGMSVKENmsltalryfsraggsl 366
                 58*******************************************988877699999***********99999*************************9 PP

                 HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + ++e +++ + ++l ++k+  +++    LSgG +q+va+ar l+++pk+l+lDEpt
  CTQ26187.1 367 KHKDEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPT 423
                 888888888888888888888888889*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.2e-05     0.012       1     123 [.      32     130 ..      32     150 .. 0.79
   2 ?    1.5   0.0      0.21   2.1e+02     235     297 ..     140     199 ..     120     205 .. 0.86
   3 !   11.6   0.0   0.00018      0.18     234     296 ..     393     452 ..     354     458 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqveeklssvetllesgll 99 
                 +++l+G Ng+GKS+ ++ l ++              ++ g++ +  ++ +++ p+++ e +i     q+ +    l++ ++++           + +++
  CTQ26187.1  32 VMALVGENGAGKSTMMKVLTGIY------------TRDAGSLLWLGKETTFNGPKSSQEAGIG-IIHQELNLIPQLTIAENIF-----------LGREF 106
                 579****************9996............5788888888888888888888888888.8888888888888888888...........88888 PP

      AAA_21 100 ldkrsleeedvfnpeargirggvs 123
                 +++  ++++++ ++ea+   + + 
  CTQ26187.1 107 VNRFGKIDWKQMYAEADKLLAKLN 130
                 888888888877777777666655 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.21
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  +lS G +++  ++  l       ++++ DEp   L    +++l+++++el++ g  ++  +H
  CTQ26187.1 140 GDLSIGDQQMVEIAKVLSFES---KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISH 199
                 567888888877777777777...89**********************999988999999999 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00018
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296
                 +  lS G ++  a++  l  ++   ++l++DEp  g +  + +++++l+++ ++ g  +il++
  CTQ26187.1 393 IGLLSGGNQQKVAIARGLMTRP---KVLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVS 452
                 5667777777766666666666...9*************************999888887765 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   1.2   2.8e-05     0.028      24     201 ..      30     203 ..      15     221 .. 0.67
   2 ?    2.5   0.0     0.082        82     135     198 ..     356     454 ..     216     472 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.8e-05
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE.SSSSSSCEEEEEEEETTSEEEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk.lkiekeevsisrrvkrkgeseykingkevtkk 121
                  ++ a+vG+NG+GKs ++  +  +   ++ + l   k +      +  +s+++a + i+ ++ +   + + +e++ + r+ ++      ki+ k++ ++
  CTQ26187.1  30 GRVMALVGENGAGKSTMMKVLTGIYTRDAGSLLWLGK-ETT---FNGPKSSQEAGIGIIHQELNLIpQLTIAENIFLGREFVNRFG---KIDWKQM-YA 120
                 56899**************997777765554443333.322...246889999999999877777632233344444444433322...3333332.35 PP

                 HHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEE.E-SSHHH CS
                 xxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
       SMC_N 122 evsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfiv.islreem 201
                 e  +ll++ ++  +       LS G++++v +a +++ ++     + ++De   aL +++++ + ++++e +++   iv is+r + 
  CTQ26187.1 121 EADKLLAKLNLRFTsqklvgDLSIGDQQMVEIAKVLSFES----KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVyISHRMKE 203
                 555666655555444445557999*********9998865....4789*********************999886655548888543 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.082
                 T......................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEE CS
                 x......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
       SMC_N 135 e......................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfiv 194
                                                        lLSgG+++ va+a      + +p+   +lDe     D    k++ +l+++ + +   +i 
  CTQ26187.1 356 LryfsraggslkhkdeqqavsdfirlfnvktpsmeqaigLLSGGNQQKVAIARG---LMTRPKV-LILDEPTRGVDVGAKKEIYQLINQFKADgLSIIL 450
                 03333333333333333333333333333333444555589***9999998865...4566665.5789999999999999999999987766444444 PP

                 E-SS CS
                 xxxx RF
       SMC_N 195 islr 198
                 +s +
  CTQ26187.1 451 VSSE 454
                 4443 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   2.5e-05     0.025      96     130 ..      27      58 ..      17      76 .. 0.77
   2 ?    2.9   0.0      0.09        90      81     129 ..     259     308 ..     234     319 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.5e-05
                  HCTTSEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallpelelktgev 130
                  + ++++++lvG+ G+GKSt++++l++     t++ 
   CTQ26187.1  27 VYAGRVMALVGENGAGKSTMMKVLTGI---YTRDA 58 
                  56789*******************986...34444 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.09
                  E--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase  81 lvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktge 129
                  +v++  + g+++++  l++ ++  ++G  G+G++ L+++l + l  + g+
   CTQ26187.1 259 KVDNLCGPGVDNVTFTLRQgEILGVAGLMGAGRTELMKVLYGALPRSSGS 308
                  555556778999999999989******************99887666555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.4   4.7e-06    0.0047      18      50 ..      30      62 ..      22      72 .. 0.84
   2 ?   -3.1   0.0       5.5   5.5e+03      89     112 ..     160     184 ..     131     195 .. 0.61
   3 ?    3.6   0.4     0.047        47      19      54 ..     279     321 ..     270     452 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.7e-06
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrvi 50
                 rv++l+G  G+GK+t++k+l+ +++++ g+++
  CTQ26187.1 30 GRVMALVGENGAGKSTMMKVLTGIYTRDAGSLL 62
                4699*********************99865555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.5
      AAA_30  89 gtllivDEagmv.dtkqlaallkaa 112
                 ++++i DE   +   +++++l++ +
  CTQ26187.1 160 SKVIIMDEPTDAlTDTETESLFRVI 184
                 4788888866553333344444444 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.047
      AAA_30  19 rvavltGpAGtGKttalkalreaweaa.g......grviglAp 54 
                  +  + G  G+G t ++k+l  a+ ++ g      ++v+  +p
  CTQ26187.1 279 EILGVAGLMGAGRTELMKVLYGALPRSsGsvtldgREVVTRSP 321
                 467789999**********998888884555555555555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.8e-05     0.018      22      39 ..      29      47 ..      19      73 .. 0.84
   2 ?   -3.0   0.0       6.6   6.6e+03      15      38 ..     271     294 ..     268     298 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
      AAA_29 22 kg.atlltGpsGsGKSTll 39
                +g ++ l+G++G+GKST++
  CTQ26187.1 29 AGrVMALVGENGAGKSTMM 47
                455899***********98 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.6
      AAA_29  15 htieidlkgatlltGpsGsGKSTl 38 
                  t+++++ ++  ++G  G+G + l
  CTQ26187.1 271 VTFTLRQGEILGVAGLMGAGRTEL 294
                 566666444777899999998766 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.4e-05     0.014       4      30 ..      31      57 ..      28      62 .. 0.91
   2 ?   -2.7   0.0       4.6   4.6e+03       9      30 ..     284     305 ..     280     320 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
  Ploopntkinase3  4 rliylvGqPGaGkstlmaeltkgfdrs 30
                    r++ lvG+ GaGkst+m  lt  + r 
      CTQ26187.1 31 RVMALVGENGAGKSTMMKVLTGIYTRD 57
                    8899*****************999986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.6
  Ploopntkinase3   9 vGqPGaGkstlmaeltkgfdrs 30 
                      G  GaG+++lm  l  ++ rs
      CTQ26187.1 284 AGLMGAGRTELMKVLYGALPRS 305
                     57789*******9998777766 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1      0.02        20     242     270 ..      27      55 ..      10      60 .. 0.75
   2 ?   -2.2   0.0       1.4   1.4e+03     329     352 ..     148     171 ..     139     213 .. 0.83
   3 !   10.0   0.1   0.00027      0.27     377     413 ..     435     470 ..     371     494 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.02
                 E-SS.EEEEEE-TTSSHHHHHHHHHHCCSE CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAlekGvyn 270
                 +  G v+++vG +  GKsT+++ l +G+y 
  CTQ26187.1  27 VYAGrVMALVGENGAGKSTMMKVL-TGIYT 55 
                 456789***************988.57776 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
                 HHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 329 qAanimealeagakllLiDEDtsA 352
                 q ++i++ l  ++k++++DE t A
  CTQ26187.1 148 QMVEIAKVLSFESKVIIMDEPTDA 171
                 556788888889999999987765 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00027
                 HHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEET CS
  ABC_ATPase 377 vdrvrelykklgvstilvvggsgdyldvAdtvilmee 413
                  ++++++ k  g+s+ilv++ + + l ++d++i+m+e
  CTQ26187.1 435 YQLINQF-KADGLSIILVSSEMPEVLGMSDRIIVMHE 470
                 4566666.778************************97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1    0.0007       0.7       6      26 ..      31      51 ..      27      73 .. 0.88
   2 ?   -2.7   0.0       6.4   6.4e+03      92     100 ..     160     168 ..     114     197 .. 0.60
   3 ?   -0.1   0.0       1.1   1.1e+03       5      29 ..     278     302 ..     275     343 .. 0.84
   4 ?    2.6   0.0      0.16   1.6e+02      87     128 ..     408     451 ..     346     455 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0007
      AAA_22  6 gilvvtGesGtGKTtllrrll 26
                ++++++Ge G+GK+t ++ l+
  CTQ26187.1 31 RVMALVGENGAGKSTMMKVLT 51
                7899************99776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.4
      AAA_22  92 ielliiDEa 100
                  +++i DE 
  CTQ26187.1 160 SKVIIMDEP 168
                 456666663 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.1
      AAA_22   5 agilvvtGesGtGKTtllrrlleql 29 
                   il v G  G+G+T l++ l   l
  CTQ26187.1 278 GEILGVAGLMGAGRTELMKVLYGAL 302
                 5677789999*******99776665 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.16
      AAA_22  87 rarav.ielliiDEaqh.lr..seealeeLrsllnlsrkgvqliLv 128
                 r  ++ +++li+DE  + ++   ++ + +L + ++   +g+++iLv
  CTQ26187.1 408 RGLMTrPKVLILDEPTRgVDvgAKKEIYQLINQFK--ADGLSIILV 451
                 22333667******999996543666666656666..999999998 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1    0.0004       0.4       2      21 ..      33      52 ..      32      73 .. 0.88
   2 ?    1.7   0.0      0.26   2.6e+02       3      39 ..     282     324 ..     280     377 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0004
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                +a+vG   +GKSt+++ ltg
  CTQ26187.1 33 MALVGENGAGKSTMMKVLTG 52
                699***************98 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.26
                 EEEESTTSSHHHHHHHHHTS......TEEESSSTTSSSSEEEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge......kaivsdkpgtTrdineg 39 
                 +++G   +G + L++ l g+       +    +  +Tr ++ g
  CTQ26187.1 282 GVAGLMGAGRTELMKVLYGAlprssgSVTLDGREVVTRSPQDG 324
                 799**************99543222334556666777777766 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2    0.0011       1.1      13      40 ..      24      51 ..      16     137 .. 0.87
   2 ?    5.0   0.1     0.023        22      19      43 ..     278     302 ..     267     310 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0011
                HHHHCHTEEEEEEESTTSSHHHHHHHHH CS
        TsaE 13 klakalgdvilLeGdLGaGKTtlvrgla 40
                +l   +g+v++L G+ GaGK+t+++ l 
  CTQ26187.1 24 ALNVYAGRVMALVGENGAGKSTMMKVLT 51
                444444899***************9875 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.023
                 TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakal 43 
                 g+++   G +GaG T l++ l  al
  CTQ26187.1 278 GEILGVAGLMGAGRTELMKVLYGAL 302
                 6678899************998776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1    0.0014       1.4      22      52 ..      30      58 ..      17     190 .. 0.81
   2 ?    3.6   0.0     0.076        76      24      63 ..     278     318 ..     270     421 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0014
      AAA_16 22 grpelvllsGesGvGKsslvrellralekdg 52
                g  +++ l+Ge G GKs++++ l   +++d 
  CTQ26187.1 30 G--RVMALVGENGAGKSTMMKVLTGIYTRDA 58
                3..7899*************99988888773 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.076
      AAA_16  24 pelvllsGesGvGKsslvrellralekdg.giflrgkcdql 63 
                 +e++ + G  G G + l++ l+ al ++   ++l g+ +  
  CTQ26187.1 278 GEILGVAGLMGAGRTELMKVLYGALPRSSgSVTLDGREVVT 318
                 478999****************9999995244477666555 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.2e-05     0.052      25      50 ..      32      57 ..      19     208 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.2e-05
      AAA_15 25 ltvliGkNnsGKSsilealdlFlnnk 50
                ++ l+G+N++GKS+ +++l  + +++
  CTQ26187.1 32 VMALVGENGAGKSTMMKVLTGIYTRD 57
                899**************997665544 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.9e-05     0.099      22      44 ..      33      55 ..      25      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.9e-05
      AAA_23 22 tlItGpNGaGKTTildAiklaLy 44
                 +++G+NGaGK+T +  ++ + +
  CTQ26187.1 33 MALVGENGAGKSTMMKVLTGIYT 55
                5789***********99886655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.018        18      19      37 ..      33      51 ..      30      62 .. 0.82
   2 ?    5.8   0.0    0.0074       7.4      21      54 ..     283     316 ..     274     327 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.018
  Zeta_toxin 19 illgGqpGAGKselaellk 37
                + l+G  GAGKs++++ l+
  CTQ26187.1 33 MALVGENGAGKSTMMKVLT 51
                5689*********998876 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0074
  Zeta_toxin  21 lgGqpGAGKselaellkdelerqgnvvrldpDdl 54 
                 ++G  GAG +el++ l  +l r ++ v+ld+ ++
  CTQ26187.1 283 VAGLMGAGRTELMKVLYGALPRSSGSVTLDGREV 316
                 8999*************************98666 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00023      0.23      28      57 ..      32      61 ..      27      85 .. 0.72
   2 ?   -2.8   0.1       4.5   4.5e+03     127     187 ..     164     224 ..     110     237 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00023
                HHHHHS--SHHHHHHHHHHHHHHS--TTT- CS
        MukB 28 vttlsGgnGaGksttmaafvtaliPdlsll 57
                v +l G nGaGkst+m  +  +   d   l
  CTQ26187.1 32 VMALVGENGAGKSTMMKVLTGIYTRDAGSL 61
                889*************99988888876544 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.5
                 TT--HHHHHEE--SSS--EE--HHHHHHHHHTSTT-..EEEE-S-HHHHHHHHHHTTSBSS-- CS
        MukB 127 edvkltdvlleklddkkarvrelnelkekleelegv..rlkkfnsvtdyhallfdlGvipkrl 187
                    ++td l+++  ++    r + elk++   +  +  r+k+   + d  +++ d   i+ r 
  CTQ26187.1 164 IMDEPTDALTDTETESL--FRVIRELKSQGRGIVYIshRMKEIFEICDDVTVFRDGQFIAERE 224
                 44556666666665533..33455555554443322114555555555555555555555555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0021       2.1       3      20 ..      35      52 ..      33      90 .. 0.80
   2 ?   -1.3   0.0       2.8   2.8e+03       5      41 ..     285     323 ..     282     330 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0021
  RNA_helicase  3 lyGpsgeGKStlakeLak 20
                  l+G++g GKSt++k L+ 
    CTQ26187.1 35 LVGENGAGKSTMMKVLTG 52
                  89************9764 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.8
  RNA_helicase   5 GpsgeGKStlakeLakallkkl..klkkkdsvysrnped 41 
                   G  g G + l+k L  al +++   +    +v++r+p+d
    CTQ26187.1 285 GLMGAGRTELMKVLYGALPRSSgsVTLDGREVVTRSPQD 323
                   66799********99998866644333445666666665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.057        57       1      19 [.      33      51 ..      33      93 .. 0.90
   2 ?    3.2   0.1      0.11   1.1e+02      36     109 ..     136     198 ..      95     208 .. 0.73
   3 ?    1.3   0.1      0.45   4.4e+02      42      42 ..     335     335 ..     281     459 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.057
                EEEESSTTSSHHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakava 19
                + l+G  G GK++++k + 
  CTQ26187.1 33 MALVGENGAGKSTMMKVLT 51
                679************9886 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.11
                 SSSTTHHHHHHHHHHHHHHHTS.TSEEEEEET.GGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEE CS
         AAA  36 skyvgesekkirelfkeakeka.kpsilfiDE.idalaksrsgseseeeervvnqLlteldgvkkkeskvivigat 109
                 +k+vg+ +   +++++ ak  + + +++++DE  dal+ ++            + L++++ ++k++ +   ++ ++
  CTQ26187.1 136 QKLVGDLSIGDQQMVEIAKVLSfESKVIIMDEpTDALTDTE-----------TESLFRVIRELKSQGR--GIVYIS 198
                 45666666666788888888888889******668887777...........6666666666666433..444555 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.45
                 H CS
         AAA  42 s 42 
                  
  CTQ26187.1 335 D 335
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.38
# Mc/sec: 3920.12
//
Query:       CTQ26188.1  [L=321]
Description: D-ribose transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-52  177.9  43.4    2.1e-52  177.9  43.4    1.3  2  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
        5.4    7.1   7.1        2.3    8.2   1.0    3.0  3  DUF543        Domain of unknown function (DUF543)
        6.5    7.4   8.8         16    6.1   2.1    2.7  2  MccV          Microcin V bacteriocin


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1      0.96   5.7e+03     136     145 ..      23      32 ..      10      36 .. 0.44
   2 !  177.9  43.4   3.5e-56   2.1e-52       1     267 [.      45     313 ..      45     314 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.96
  BPD_transp_2 136 llalllvlav 145
                   l+all+++av
    CTQ26188.1  23 LIALLVLIAV 32 
                   2233333322 PP

  == domain 2  score: 177.9 bits;  conditional E-value: 3.5e-56
  BPD_transp_2   1 gilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvg 97 
                   +++n+l ++++ ai+A+G++lv+ ++ +i+l++g+++al + vaa ++    +  l+a+++al++gaa+g+++g++v+r +v+ +i+tl ++++l+g
    CTQ26188.1  45 NLFNILQQTSVNAIMAVGMTLVI-LTSGIDLSVGSLLALTGAVAASIVGIEVN-ALVAVAAALALGAAIGAVTGVIVARGRVQAFIATLVMMLLLRG 139
                   689********************.****************8877776666555.9****************************************** PP

  BPD_transp_2  98 ltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaG 194
                   +t  ++t+++  ++g s   +l+g++g  ++ +    v++++++ la++++l++tr+Gr ++a+g+ne a r++Gi+v++vk++++++ g+lA laG
    CTQ26188.1 140 VTM-VYTNGSPINTGFSDNADLFGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYALCGMLASLAG 235
                   ***.************************99999998889999999**************************************************** PP

  BPD_transp_2 195 allalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilv 267
                   ++ +++l s++p +g+g++++aiaavvlGg+      g+++gt+iGali+g++++ +l+llg+++ +++++  ++++l+
    CTQ26188.1 236 IIEVARLSSAQPTAGTGYELDAIAAVVLGGTslaggkGRIVGTLIGALILGFLNN-GLNLLGVSSYYQMIVKAVVILLA 313
                   *******************************************************.*******9999999999998887 PP

>> DUF543  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.22   1.3e+03      14      43 ..      52      81 ..      44      83 .. 0.81
   2 ?    8.2   1.0   0.00039       2.3      32      51 ..     105     124 ..      96     133 .. 0.79
   3 ?    0.1   0.1      0.14   8.3e+02      14      46 ..     249     284 ..     239     285 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.22
      DUF543 14 esdldekwDaclsnllvkvglgllvGvvas 43
                ++++++ + + ++ +++ +g+ l vG +++
  CTQ26188.1 52 QTSVNAIMAVGMTLVILTSGIDLSVGSLLA 81
                567888888899999999999999998876 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00039
      DUF543  32 vglgllvGvvasvllfrrRa 51 
                  +lg+++G+v++v+++r R 
  CTQ26188.1 105 LALGAAIGAVTGVIVARGRV 124
                 699**************664 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.14
      DUF543  14 e...sdldekwDaclsnllvkvglgllvGvvasvll 46 
                     ++ld+   ++l  + +  g g +vG++++ l+
  CTQ26188.1 249 AgtgYELDAIAAVVLGGTSLAGGKGRIVGTLIGALI 284
                 344588999999999999999999999999999875 PP

>> MccV  Microcin V bacteriocin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.1    0.0027        16      15      51 ..      87     124 ..      73     137 .. 0.80
   2 ?    4.5   0.6    0.0084        50      24      52 ..     257     285 ..     237     292 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0027
        MccV  15 agddsgrdiakgigaaagtfvaGaiGaivggiva.gav 51 
                 a    g ++   ++ aa+  ++ aiGa++g iva g v
  CTQ26188.1  87 AASIVGIEVNALVAVAAALALGAAIGAVTGVIVArGRV 124
                 346679999999******************99873445 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0084
        MccV  24 akgigaaagtfvaGaiGaivggivagavy 52 
                 a ++   +gt +aG+ G ivg+++++ + 
  CTQ26188.1 257 AIAAVVLGGTSLAGGKGRIVGTLIGALIL 285
                 33455679999************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1194  (0.066596); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2365.35
//
Query:       CTQ26189.1  [L=296]
Description: D-ribose transporter subunit; periplasmic-binding compoent of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-60  204.4  10.9    2.6e-60  204.2  10.9    1.0  1  Peripla_BP_4  Periplasmic binding protein domain
    5.1e-28   98.3   2.0    6.2e-28   98.0   2.0    1.0  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    1.6e-16   61.1   0.1    6.6e-16   59.1   0.1    1.8  2  Peripla_BP_3  Periplasmic binding protein-like domain
      7e-14   52.2   5.6      1e-13   51.7   4.6    1.5  2  Peripla_BP_6  Periplasmic binding protein
    2.4e-06   27.0   6.8     0.0025   17.1   1.0    2.3  2  ABC_sub_bind  ABC transporter substrate binding protein
  ------ inclusion threshold ------
      0.029   14.6   0.0       0.51   10.6   0.0    2.4  2  PucR          Purine catabolism regulatory protein-like famil


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.2  10.9   8.7e-64   2.6e-60       1     258 []      29     281 ..      29     281 .. 0.97

  Alignments for each domain:
  == domain 1  score: 204.2 bits;  conditional E-value: 8.7e-64
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CE CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerl 97 
                   i++v+++ +npff ++++g+++ a++lg++ +v  d++n+ a++ a+++d+  +g ++++++p+ds+a+  a+k a++a+IpV++ d++ a +g+++
    CTQ26189.1  29 IALVISTLNNPFFVSLKDGAQKEADKLGYNLVVL-DSQNNPAKELANVQDLTVRGTKLLLINPTDSDAVGNAVKMANQAKIPVITLDRQ-ATKGDVV 123
                   799**************************99996.******************************************************.******* PP

                   EEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSCC CS
  Peripla_BP_4  98 ayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanp.ldgilaandg 193
                   ++++ dn + G+++++y+a+k+g++ +kv+ l+G +g+++a+er egf+++ ++  +++++a+ ++a+ d++k+ + +++llta+p +++++a nd+
    CTQ26189.1 124 SHIASDNVQGGKMAGDYIAKKVGES-AKVIELQGIAGTSAARERGEGFKQAVAA-HKFNVLAS-QPADFDRTKGLNVMQNLLTAHPdVQAVFAQNDE 217
                   ************************9.*************************999.7*****96.566****************9966********** PP

                   HHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT-- CS
  Peripla_BP_4 194 maegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGkk 258
                   ma+gal+al+ ag+++ + v+g+D+tp   +a+ +G++ atvaq p ++g+ +ve+a ++lkG+k
    CTQ26189.1 218 MALGALRALQTAGKSDVM-VVGFDGTPDGEKAVNSGKLAATVAQLPEQIGAKGVETADKVLKGEK 281
                   *************98776.********************************************97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   2.0   2.1e-31   6.2e-28       2     250 ..      27     268 ..      26     291 .. 0.86

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 2.1e-31
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE.-S-GGHHHHHHHHHH.T-EEEEESS--B-TTTS CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliia.tsdtsfdditakaes.gipvialedaidapdgv 95 
                   +++ lv+  l++Pff++l  g++k+a ++g+++++l  ++++  + + ++ l  +g + l+i  t  + + + +++a++  ipvi l++++ + d v
    CTQ26189.1  27 DTIALVISTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKElANVQDLTVRGTKLLLINpTDSDAVGNAVKMANQaKIPVITLDRQATKGDVV 123
                   7899************************************999988*****************66666678888888888************99999 PP

                   -EEEE-HHHHHHHHHHHHHHHHHHHT.GEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHH CS
  Peripla_BP_1  96 PcvipddtqageestqkLiaeghkrp.iallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindea 191
                     +  d+ q g+ ++ +  ++  ++  ++ l+g +  ++a+er +Gf +a+a++   +        + d++++ + +++ll  hP+++a+ a+nde+
    CTQ26189.1 124 SHIASDNVQGGKMAGDYIAKKVGESAkVIELQGIAGTSAARERGEGFKQAVAAH--KFNVLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEM 218
                   9999*****************9999989999999********************..5577777778999**************************** PP

                   HHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEE.EE-HHHH....HHH CS
  Peripla_BP_1 192 alGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsp.laviqlprellGrk 250
                   alGa +al+ +G    k++v      vv++dg  + ++ +  +++ ++v+qlp e++G k
    CTQ26189.1 219 ALGALRALQTAG----KSDV-----MVVGFDGTPDGEKAVNSGKLaATVAQLP-EQIGAK 268
                   ************....9999.....9999999955444443333314678888.555543 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.51   1.5e+03      12      61 ..      29      76 ..      19     106 .. 0.72
   2 !   59.1   0.1   2.2e-19   6.6e-16      19     152 ..     156     285 ..     146     296 .] 0.77

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.51
                  EEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH CS
  Peripla_BP_3 12 iafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaar 61
                  ia++   +  ++++   +++g+++++ +lg++l +   +++++ + a ++
    CTQ26189.1 29 IALVI--STLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQ 76
                  55555..4455677788888888888888888888777777666555555 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 2.2e-19
                   TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-.SS-SSHHHHH.....HHHHHCC-SE..EEEESSCCHHHHHHHHHCCTT--TTTTEEEEBSS-- CS
  Peripla_BP_3  19 gdrgasasderergfrqaleelglplnetvvaa.ddpaaaaaaraalllqalklaalPt..AviaasDelAlgvlqalreaglrvPedlsvigfdds 112
                   g  g+sa++er +gf+qa++++++++ + + a+ d+  + + +++ l        a+P+  Av+a++De+Alg+l+al+ ag +   d+ v+gfd++
    CTQ26189.1 156 GIAGTSAARERGEGFKQAVAAHKFNVLASQPADfDRTKGLNVMQNLL-------TAHPDvqAVFAQNDEMALGALRALQTAGKS---DVMVVGFDGT 242
                   5667899******************6666554303333333333322.......2366445**********************5...********** PP

                   SCC..CSSSS--.EEEE--HHHHHHHHHHHHHHHHTT---S-- CS
  Peripla_BP_3 113 ela..alssPpl.TtvrqpleelGraaaellldllegekappe 152
                   +    a+ s +l  tv+q +e++G + +e+  ++l+gek +++
    CTQ26189.1 243 PDGekAVNSGKLaATVAQLPEQIGAKGVETADKVLKGEKVEAN 285
                   99974444457767*********************88876654 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.094   2.8e+02     131     166 ..      22      60 ..      10      64 .. 0.76
   2 !   51.7   4.6   3.4e-17     1e-13      44     229 ..      58     243 ..      56     262 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.094
                   HHTTSCEEEEE..EESSHHHHHHHHHHHHHHHCCTEE.E CS
  Peripla_BP_6 131 kelggkkvalv..yadyafgregiaalkaaakaaGge.v 166
                   +   + ++alv  + +++f  ++ +++++ a ++G++ v
    CTQ26189.1  22 NAMAKDTIALVisTLNNPFFVSLKDGAQKEADKLGYNlV 60 
                   4444568887755688*******************9954 PP

  == domain 2  score: 51.7 bits;  conditional E-value: 3.4e-17
                   EEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEEESS-HHCCTTSTTEEESS--HHHHHHHHHHHHHHHTT..SCEE CS
  Peripla_BP_6  44 elverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvigpagltgekcspyvfslgpsysaqasalveylakelg..gkkv 138
                   +lv+ D +++p++ ++++++l  ++   +l+ p+ s+++  +++ ++++++pvi+   +++ +  + v +++ ++ + ++ +++y+ak++g  +k +
    CTQ26189.1  58 NLVVLDSQNNPAKELANVQDLTVRGTKLLLINPTDSDAVGNAVKMANQAKIPVITL--DRQATKGDVVSHIASDNVQGGKMAGDYIAKKVGesAKVI 152
                   6899*******************999****************************97..55556666666777777799*************877777 PP

                   EEEE.ESSHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT-SE.EEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CH CS
  Peripla_BP_6 139 alvy.adyafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlqikaagada.vllagtgadlaallkaaaeaGldakrillvswsgse 229
                    l + a +++ re  +++k+a++a+ ++v+++ p +++ t   ++++++  a++d+  ++a   +++  +l+a+++aG +   +++v+++g++
    CTQ26189.1 153 ELQGiAGTSAARERGEGFKQAVAAHKFNVLASQPADFDRTKGLNVMQNLLTAHPDVqAVFAQNDEMALGALRALQTAGKSD--VMVVGFDGTP 243
                   78885669999**********************************************666777789**************5..7888888765 PP

>> ABC_sub_bind  ABC transporter substrate binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.0   8.3e-07    0.0025     198     247 ..      94     143 ..      42     159 .. 0.81
   2 !   13.0   0.5   1.4e-05     0.043     176     256 ..     199     284 ..     158     293 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.3e-07
                   HTHHHHHHHHHHTT--EEESSHHHHHTT-SEEEE--HHHHHHHHHHHHHH CS
  ABC_sub_bind 198 safeavvkaanqakiPviasddesvkegalaalgvnekelGvqagkvvvk 247
                   +a    vk anqakiPvi+ d ++ k + +  ++ ++ + G+ ag++++k
    CTQ26189.1  94 DAVGNAVKMANQAKIPVITLDRQATKGDVVSHIASDNVQGGKMAGDYIAK 143
                   455667899*****************999999**************9987 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.4e-05
                   HHHHHHHTT-SEEEE-S-HHHHHTHHHHHHHHHHTT--E....EESSHHHHHTT-SEE.EE--HHHHHHHHHHHHHHHHTT--GGG CS
  ABC_sub_bind 176 savsslaekvdaiyiltdnliasafeavvkaanqakiPv....iasddesvkegalaa.lgvnekelGvqagkvvvkiLkGkkpkd 256
                   +    +  +v+a+++ +d +   a+ a+ +a+++  + v     +  +++v+ g laa +++   ++G +  + + k+LkG+k++ 
    CTQ26189.1 199 QNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVgfdgTPDGEKAVNSGKLAAtVAQLPEQIGAKGVETADKVLKGEKVEA 284
                   334445679999******9999999999888877655553222345689*******6615566799*****************985 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.078   2.3e+02      68     102 ..      25      64 ..       7      71 .. 0.81
   2 ?   10.6   0.0   0.00017      0.51      54     114 ..      66     127 ..      60     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.078
        PucR  68 eagvaaLvikl.g.r...eipeelieaadelglPlielpe 102
                 +++  aLvi + + +   ++++ + + ad+lg  l++l++
  CTQ26189.1  25 AKDTIALVISTlNnPffvSLKDGAQKEADKLGYNLVVLDS 64 
                 56778999999545378899**************999976 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00017
        PucR  54 ddpealaelvrelaeagvaaLviklgr.eipeelieaadelglPlielpeevpfveiieevl 114
                 ++p++  + v++l  +g   L i+  + +   +++++a+++++P+i+l+++ +  ++++++ 
  CTQ26189.1  66 NNPAKELANVQDLTVRGTKLLLINPTDsDAVGNAVKMANQAKIPVITLDRQATKGDVVSHIA 127
                 5666777778888888888899998644888999****************999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2181.15
//
Query:       CTQ26190.1  [L=310]
Description: ribokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-73  247.9   4.6    1.5e-73  247.7   4.6    1.0  1  PfkB          pfkB family carbohydrate kinase
    3.4e-15   56.1   0.6    4.8e-15   55.6   0.6    1.2  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.7   4.6   1.7e-77   1.5e-73       3     301 ..       7     298 ..       5     299 .. 0.96

  Alignments for each domain:
  == domain 1  score: 247.7 bits;  conditional E-value: 1.7e-77
                 EEEEEEEEEEEEEEECSSH..TTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETT CS
        PfkB   3 kvvviGealidliavsekl..egelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvde 99 
                 k+vv+G+++ d i++ +++  +ge+v++++++  +GG+gaN+Ava+ r gad afi + GdD++Ge+++++l+++++d++ v+ ++++ tg+ali+v++
  CTQ26190.1   7 KLVVLGSINADHILNLDAFptPGETVTGHHYQVAFGGKGANQAVAAGRSGADIAFIACTGDDDIGERIRRQLASDKIDVAPVRAVAGEATGVALIFVNA 105
                 89************************************************************************************************* PP

                 TSEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEEEHHHHHHHH CS
        PfkB 100 dgertivfnrgaaadltkeeleededlleeadllyisgllsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkpneeElealt 198
                 +ge+ i ++ ga+a+l+ +++e  ++ +++a+ l +      e+p +++ ++a++a+++   + ++l+p++a  +e  +ellal+d+++pne+E+e+lt
  CTQ26190.1 106 EGENVIGIHAGANAALSVSQVEAEKERIASAQALLMQ----LESPLESVIAAAKIAHHHH--TTVVLNPAPA--RELPDELLALVDIITPNETEAEKLT 196
                 ******************9987777777887777666....5******************..9********5..9************************ PP

                 TSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSSST CS
        PfkB 199 gekledieealaalhklkakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqkkgaia 297
                 g   e+ e+a++a+  l+akg+ tv +tlG++G++++ ++++ ++p  + v+++Dt++AGD+f+g+++ alleg  l ea+rfa+a+Aa++v++kga+ 
  CTQ26190.1 197 GIRVESDEDAAKAADVLHAKGIGTVMITLGSRGVWLSAEGESRRIPG-FRVQAIDTIAAGDTFNGALVTALLEGTALPEAIRFAHAAAAIAVTRKGAQP 294
                 *************************************9999999999.77************************************************9 PP

                 CSCC CS
        PfkB 298 slpt 301
                 s+p+
  CTQ26190.1 295 SVPW 298
                 9986 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.6   5.3e-19   4.8e-15     100     230 ..     162     285 ..     128     294 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 5.3e-19
                   SSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S-- CS
  Phos_pyr_kin 100 gselleeeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaerietknt 196
                    + +l++   + l +eLl l+++itPN  Eae+L+g ++++ ed+ +aa+ l++ g  +V+i+ g     + v   +l +++e +++++ r++  +t
    CTQ26190.1 162 TTVVLNPAPARELPDELLALVDIITPNETEAEKLTGIRVESDEDAAKAADVLHAKGIGTVMITLGS----RGV---WLSAEGESRRIPGFRVQAIDT 251
                   44578888899999*************************************************997....355...788****************** PP

                   BTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHH CS
  Phos_pyr_kin 197 hGtGCtlssaiaaelakgesleeAvkkAkeyvte 230
                     +G+t+  a+ + l +g  l+eA++ A++    
    CTQ26190.1 252 IAAGDTFNGALVTALLEGTALPEAIRFAHAAAAI 285
                   **************************99876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2428.93
//
Query:       CTQ26191.1  [L=327]
Description: DNA-binding transcriptional repressor of ribose metabolism [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-43  149.3   0.1    3.2e-43  147.9   0.1    1.6  2  Peripla_BP_3  Periplasmic binding protein-like domain
      7e-35  120.8   0.0    8.7e-35  120.5   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    8.9e-18   63.8   1.1    1.5e-17   63.1   1.1    1.4  1  LacI          Bacterial regulatory proteins, lacI family
    2.1e-17   63.6   0.0    3.8e-17   62.7   0.0    1.4  2  Peripla_BP_4  Periplasmic binding protein domain
  ------ inclusion threshold ------
      0.069   12.9   0.0       0.69    9.7   0.0    2.6  3  HTH_38        Helix-turn-helix domain
       0.13   12.2   0.3       0.17   11.8   0.3    1.2  1  Borrelia_REV  Borrelia burgdorferi REV protein
       0.14   11.6   0.1       0.26   10.8   0.1    1.5  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
       0.15   12.1   0.0       0.47   10.6   0.0    1.8  1  HTH_3         Helix-turn-helix
       0.17   11.9   0.0       0.41   10.7   0.0    1.7  1  HTH_35        Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         2   3.9e+03       9      53 ..      56      98 ..      49     127 .. 0.69
   2 !  147.9   0.1   1.6e-46   3.2e-43       1     165 [.     166     326 ..     166     327 .] 0.96

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2
                  --EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS CS
  Peripla_BP_3  9 hrriafiggegdrgasasderergfrqaleelglplnetvvaadd 53
                   r+i+++   ++++++++ e+ rg+++ + e g+ l  + + +d+
    CTQ26191.1 56 TRTIGMLI--TASTNPFYSELVRGVERSCFERGYSLVLCNTEGDE 98
                  57788888..67777888888888888887777776655555444 PP

  == domain 2  score: 147.9 bits;  conditional E-value: 1.6e-46
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH.HHCC-SEEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal.klaalPtAviaasDelAlgvlqalrea 96 
                   +++L+++Gh ria+i+  g+ +++ +++r++g+  a+++ glp++e +v + d++ +++  a+    +l +l ++P+Av++ +D++A+g++qal +a
    CTQ26191.1 166 TQYLIDQGHSRIACIA--GPLDKTPARLRLEGYHAAMARCGLPVAEGYVVTSDFEFGGGFSAMQ---QLlALPQRPQAVFVGNDAMAVGAYQALYQA 257
                   69**************..9999********************************9999999977...55577779********************** PP

                   T--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GG CS
  Peripla_BP_3  97 glrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReS 165
                   gl++P+d +++g+dd+ela++++PplTt++qp +elG+ a++ l+++++++++++++v+l pelv+R+S
    CTQ26191.1 258 GLQIPQDMALVGYDDIELARYMTPPLTTIHQPKDELGELAIDVLIHRMADPQQKQQRVQLTPELVVRGS 326
                   ********************************************************************9 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   0.0   4.4e-38   8.7e-35       2     270 ..      57     316 ..      56     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 120.5 bits;  conditional E-value: 4.4e-38
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEE.E-S-GG.HHHHHHHHHHT-EEEEESS--B-TTTS CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidglii.atsdts.fdditakaesgipvialedaidapdgv 95 
                    ++g+++  +++Pf+ +lv g+++  +e g+ ++l +++++e+   + ++ l +k++dgl++ +t + + +++i +     +p ++++ a  +  + 
    CTQ26191.1  57 RTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMnRNLETLMQKRVDGLLLlCTETHQpSPEIMQRYP-SVPTVMMDWAPFDG-DS 151
                   68**************************************9999989************87526887776666655555.5*******995444.56 PP

                   -EEEE-HHHHHH.HHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-SSH CS
  Peripla_BP_1  96 Pcvipddtqage.estqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaivaind 189
                   +  i d+   g   +tq+Li +gh r ia+++gp  +  a+ r +G+ aa+a +Gl+v +  v + + +  ++++a+++ll  +  P+  a+  +nd
    CTQ26191.1 152 D-LIQDNSLLGGdMATQYLIDQGHSR-IACIAGPLDKTPARLRLEGYHAAMARCGLPVAEGYVVTSDFEFGGGFSAMQQLLALPqrPQ--AVFVGND 244
                   6.677877666659************.*******************************************************9999**..******* PP

                   HHHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEEE--EEE CS
  Peripla_BP_1 190 eaalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkerehprvll 270
                    +a+Ga++al ++G l+i+++      ++v+yd +   +      +pl++i  p+++lG  a d ++  +   +++ ++++
    CTQ26191.1 245 AMAVGAYQALYQAG-LQIPQDM-----ALVGYDDI---ELARYMTPPLTTIHQPKDELGELAIDVLIHRMADPQQKQQRVQ 316
                   **************.*******.....*******9...6777889********************9998855555555555 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   1.1   7.4e-21   1.5e-17       2      46 .]       1      45 [.       1      45 [. 0.99

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 7.4e-21
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                +kDVAr AGVS++TVS+v+n+++ Vse++  +V aa++ lnY+P+
  CTQ26191.1  1 MKDVARIAGVSTSTVSHVINKDRFVSEAITAKVDAAIKSLNYAPS 45
                8******************************************97 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.5     7e+03      47      60 ..      24      37 ..      18      48 .. 0.74
   2 !   62.7   0.0   1.9e-20   3.8e-17       1     251 [.      59     302 ..      59     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.5
                  HHHHHHHTT-SEEE CS
  Peripla_BP_4 47 qiedaiakgvdgii 60
                  +++ ai+++vd+ i
    CTQ26191.1 24 FVSEAITAKVDAAI 37
                  56778888888765 PP

  == domain 2  score: 62.7 bits;  conditional E-value: 1.9e-20
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHH.HHHHHHHHTT-EEEEESTTGCTTT-C CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstala.palkkakaaGIpVvafdsddapsger 96 
                   ig+++++++npf s++  g+e  + e g++ ++  ++e+d ++++ ++e++ +k vdg+++  +++ + + +++++     +p v +d +  p + +
    CTQ26191.1  59 IGMLITASTNPFYSELVRGVERSCFERGYSLVLC-NTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSpEIMQRYP--SVPTVMMDWA--PFDGD 150
                   7999*************************99997.***********************************56666666..57********..88888 PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH.....-TTCEECCEEESTTTCHHHHHHHHHHHHH.TTTECEE CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke.....ypgikivaevaganwdaekaqqaleallt.anpldgi 187
                   +  ++ ++   G ++ +yl ++  +    ++ +aG ++ + a++r+eg +++++      + g+ + +     + +   + +a+++ll+ ++  +++
    CTQ26191.1 151 SDLIQDNSLLGGDMATQYLIDQGHS---RIACIAGPLDKTPARLRLEGYHAAMARcglpvAEGYVVTS-----DFEFGGGFSAMQQLLAlPQRPQAV 239
                   8899999999999999******995...5************************995555444444444.....8999************966469** PP

                   EESSCCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHH CS
  Peripla_BP_4 188 laandgmaegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelav 251
                   +  nd+ma ga +al +agl+  +  + +++++  l++     ++ t+ q+  elg+ a++++ 
    CTQ26191.1 240 FVGNDAMAVGAYQALYQAGLQIPQDMALVGYDDIELARYMTPPLT-TIHQPKDELGELAIDVLI 302
                   ********************5444466666777777666667766.9*************9986 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00035      0.69      23      41 ..       1      19 [.       1      21 [. 0.90
   2 ?   -1.9   0.0       1.5     3e+03      29      42 ..      39      52 ..      38      54 .. 0.76
   3 ?   -1.4   0.0         1     2e+03      14      34 ..     167     188 ..     167     189 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00035
      HTH_38 23 lreIArrLgrspsTIsREl 41
                ++++Ar+ g+s+sT+s  +
  CTQ26191.1  1 MKDVARIAGVSTSTVSHVI 19
                679*************987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
      HTH_38 29 rLgrspsTIsRElk 42
                 L+++ps  +R lk
  CTQ26191.1 39 SLNYAPSALARSLK 52
                68999998888776 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1
      HTH_38  14 erllaeG.lslreIArrLgrsp 34 
                 ++l+++G   ++ IA  L++ p
  CTQ26191.1 167 QYLIDQGhSRIACIAGPLDKTP 188
                 6788899555888988887766 PP

>> Borrelia_REV  Borrelia burgdorferi REV protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   8.8e-05      0.17     135     172 ..       3      40 ..       1      42 [. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.8e-05
                   HHHHHTT---TT......HHHHH.HHHHHHHHHHHHHHH CS
  Borrelia_REV 135 siaklvGvntsgialhainikkl.skdvveqidkvikyl 172
                    +a+ +Gv ts+ + h+in +++ s+ + +++d  ik l
    CTQ26191.1   3 DVARIAGVSTST-VSHVINKDRFvSEAITAKVDAAIKSL 40 
                   6899********.78*****9953788889******987 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00013      0.26      30      45 ..       1      16 [.       1      21 [. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
  HTH_Tnp_ISL3 30 vkavArqlgvSwtTVw 45
                  +k+vAr+ gvS++TV 
    CTQ26191.1  1 MKDVARIAGVSTSTVS 16
                  79*************7 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00024      0.47      13      33 ..       2      22 ..       1      27 [. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00024
                HHHHHHHTSSHHHHHHHHTTS CS
       HTH_3 13 eeLAeklGvsrstisriEnGe 33
                +++A+ +Gvs st+s+ +n +
  CTQ26191.1  2 KDVARIAGVSTSTVSHVINKD 22
                89**************99975 PP

>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00021      0.41      18      50 ..       1      33 [.       1      47 [. 0.93

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
      HTH_35 18 LaalsreaglssstlsnaltrpwpkgEalIAea 50
                +++++r ag s st+s+++++  + +Ea+ A++
  CTQ26191.1  1 MKDVARIAGVSTSTVSHVINKDRFVSEAITAKV 33
                6789*************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2640.20
//
Query:       CTQ26192.1  [L=465]
Description: multidrug or homocysteine efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-53  180.4  58.6    9.2e-46  156.4  44.6    2.2  2  MFS_1     Major Facilitator Superfamily
    3.9e-05   22.2  11.0    3.9e-05   22.2  11.0    2.3  2  MFS_3     Transmembrane secretion effector
     0.0012   18.2   9.4     0.0012   18.2   9.4    3.1  3  MFS_4     Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
      0.036   12.6  40.4      0.051   12.1   8.4    2.7  2  MFS_2     MFS/sugar transport protein
        6.8    6.3  10.9       0.76    9.4   0.4    3.3  3  Saf_2TM   SAVED-fused 2TM effector domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4  44.6   2.6e-49   9.2e-46       2     352 ..      17     406 ..      16     406 .. 0.89
   2 !   38.0   6.0   2.5e-13   8.8e-10      59     175 ..     325     454 ..     323     465 .] 0.83

  Alignments for each domain:
  == domain 1  score: 156.4 bits;  conditional E-value: 2.6e-49
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 ++a+f+ al+++il++alp a+a++l+ sp +++ ++  y+l+ a ++++ G+l+drfG rrv+++++ lf lg+l++++ ss+   l+++rv+qG+g+
  CTQ26192.1  17 AMAFFMQALDATILNTALP-AIAHSLNRSPLAMQSAIISYTLTVAMLIPVSGWLADRFGTRRVFIIAVSLFTLGSLACAL-SSSLtELVIFRVIQGIGG 113
                 689****************.******************************************************777777.55555************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 ++++p++  ++ + +p++e   ++ ++++   +G+ilgp+lgg+++++++W+++f+i+ ++++++++ +  ++p   ++r+r+     +          
  CTQ26192.1 114 AMMMPVARLALLRAYPRSELLPVLNFVTMPGLVGPILGPVLGGVFVTWASWHWIFLINIPIGVIGILYARKYMPNFTTPRRRFDIGGFLlfglslvlfs 212
                 *****************************************************************9987777755555555554444447899999999 PP

       MFS_1 189 .................................kgtgpaplvpawkallkdpvlwillialllfffgfsg...lltllplylqevlglsglllagllla 251
                                                  +++ p+pl++ +++++++     + ++++++ +   g   + +l+pl+lq  +g++ +++ag ++a
  CTQ26192.1 213 sgielfgekivatwqalaviavsllllvayvrhARRHPTPLIS-LSLFKTHT----FSVGIAGNLATRLGtgcVPFLMPLMLQVGFGYP-AIIAGCMIA 305
                 99999999999999999*************9999999999999.99999999....55555555433333556****************.8******** PP

       MFS_1 252 llalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll.vlvliGfglgfvfpsllalasdlappeeagtasglfntagslgg 349
                  +a++++i++  ++++++ +g r++l+ + +++ l+ + + l ++   ++++ll +l+++G+++++ f+++++++   +  ++a + ++l  ++++l++
  CTQ26192.1 306 PTAIGSIIAKSTVTQVLRWFGYRKTLVGITVFIGLMIAQFSLQSPE-MPLWMLLlPLFVLGMAMSTQFTAMNTITLADLTDDNASSGNSLLAVTQQLSI 403
                 *********************9999998888888888888888888.555555549999***************************************9 PP

       MFS_1 350 alg 352
                 +lg
  CTQ26192.1 404 SLG 406
                 997 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 2.5e-13
       MFS_1  59 fGrrrvlllglllfalglllllfa.....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg... 149
                 fG r++l+   ++ +l+  ++ f+      +lw+ll+  ++ G+++++ f+a+++++ +  ++++ +++++ll+++ +l++ lg +++++++  +    
  CTQ26192.1 325 FGYRKTLVGITVFIGLM--IAQFSlqspeMPLWMLLLPLFVLGMAMSTQFTAMNTITLADLTDDNASSGNSLLAVTQQLSISLGVAISAAVLRFYEgfd 421
                 79899888888888888..444533345677***********************9987777777****************************77779** PP

       MFS_1 150 .......Wravfyilaivsllafvlfllllpee 175
                        ++++f+ +++++++++++f+ll   +
  CTQ26192.1 422 nastvqqFHYTFITMGVITIISALMFMLLRAKD 454
                 ************************866655433 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2  11.0   1.1e-08   3.9e-05      36     176 ..      37     172 ..      12     249 .. 0.83
   2 !    5.1   5.4    0.0017       6.2     232     330 ..     276     377 ..     261     413 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.1e-08
       MFS_3  36 lmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkr 134
                 +  +++ spl++    ++ tL + +l  ++G laD f  R+v++++ +l  l+s+  ++++ l       l+++ ++ giG a+++P  + ++    +r
  CTQ26192.1  37 IAHSLNRSPLAMQSAIISYTLTVAMLIPVSGWLADRFGTRRVFIIAVSLFTLGSLACALSSSL-----TELVIFRVIQGIGGAMMMPVARLALLRAYPR 130
                 4556777888777777899*************************9999999999888777654.....67999************************** PP

       MFS_3 135 rdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavna 176
                 +++       ++   +    GP lgGv v+++   + f +n 
  CTQ26192.1 131 SELLPVLNFVTMPGLVGPILGPVLGGVFVTWASWHWIFLINI 172
                 ************999***********************9996 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0017
       MFS_3 232 lsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalas...slwvavlvlllgGaaWitalst 327
                 l +  v  L+Pl+ +   +  a++ G +++   +G i++  +++++ + ++  + +   +v + l++++ +l s   +lw+++l l ++G a  t ++ 
  CTQ26192.1 276 LGTGCVPFLMPLMLQVGFGYPAIIAGCMIAPTAIGSIIAKSTVTQVLRWFGYRKTLVGITVFIGLMIAQFSLQSpemPLWMLLLPLFVLGMAMSTQFTA 374
                 556677789****************************99777666666677776666777888999999999862225799999999***999999998 PP

       MFS_3 328 lnv 330
                 +n+
  CTQ26192.1 375 MNT 377
                 886 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   9.4   3.5e-07    0.0012     194     337 ..      14     158 ..       3     166 .. 0.89
   2 !    4.1   0.5    0.0066        24     143     173 ..     218     248 ..     205     274 .. 0.78
   3 ?   -1.8   7.0      0.41   1.5e+03      61     170 ..     331     452 ..     285     464 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.5e-07
       MFS_4 194 lalllaYglaGfGYiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllsllspsplglivssvllGlt 292
                 ++ ++a+++ ++   i  t l+aia++  +++l+ + + + + l++++ + v+ ++a+r g+rr++ +a+ +  +g l++ ls s++ l++  v+ G  
  CTQ26192.1  14 WIAAMAFFMQALDATILNTALPAIAHSLNRSPLAMQSAIISYTLTVAMLIPVSGWLADRFGTRRVFIIAVSLFTLGSLACALSSSLTELVIFRVIQGIG 112
                 677899999*************************************************************************************99988 PP

       MFS_4 293 flaitalvlqlarelappat.rrllglmTasfgigQilGpllasll 337
                   ++++++  +  + +p ++   +l ++T+   +g ilGp+l ++ 
  CTQ26192.1 113 GAMMMPVARLALLRAYPRSElLPVLNFVTMPGLVGPILGPVLGGVF 158
                 88888777555555666666599*****************998765 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0066
       MFS_4 143 lglsasslWlalavlsavllllvalllpraa 173
                 +g +  ++W+alav+++ llllva ++ +++
  CTQ26192.1 218 FGEKIVATWQALAVIAVSLLLLVAYVRHARR 248
                 45566778***************99998333 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.41
       MFS_4  61 llagllatvllllamaltes...faaflliRflaGvasAvvlvfgsslvlahaa...aarrervgallf.aGvGlGiavsgllvllllqlglsassl.. 150
                 l + ++   l+++  +l +    ++++ll  f++G+a  + + ++ ++ la ++   a+  ++++a+     + lG+a+s+ +  +   ++ ++ +   
  CTQ26192.1 331 LVGITVFIGLMIAQFSLQSPempLWMLLLPLFVLGMAMSTQFTAMNTITLADLTddnASSGNSLLAVTQqLSISLGVAISAAVLRFYEGFDNASTVQqf 429
                 33444444444444444332211455556689*********999999997766511145556677776415899*****99988887666555544466 PP

       MFS_4 151 ...Wlalavlsavllllvalllp 170
                     + ++v+ ++  l+ +ll+ 
  CTQ26192.1 430 hytFITMGVITIISALMFMLLRA 452
                 66788888888888877776665 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   8.4   1.4e-05     0.051     227     333 ..      14     118 ..       9     127 .. 0.82
   2 ?    7.2  22.2   0.00043       1.5     236     414 ..     274     447 ..     199     451 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.4e-05
       MFS_2 227 lillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviag 325
                 +i +++f+++al  ++ln++l   +    ++  a++   +  t+ ++  ip+  +la r+g +++++++ +l  ++++ + l   s+l+ ++++ vi g
  CTQ26192.1  14 WIAAMAFFMQALDATILNTALPAIAHSLNRSPLAMQSAIISYTLTVAMLIPVSGWLADRFGTRRVFIIAVSLFTLGSLACALS--SSLTELVIFRVIQG 110
                 56677788888989999999887777777799********9*************************99998888887777766..77777777777777 PP

       MFS_2 326 fgvgvaal 333
                 +g ++++ 
  CTQ26192.1 111 IGGAMMMP 118
                 77777665 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00043
       MFS_2 236 aalalgvlnglllYyltyvlgngsaasvfllvv.tisallgiplwqplakrlgkkntyllgalltivllvlvlll..qpsnlllflvllviagfgvgva 331
                 + l++g+   l+ + l+   g  + ++  ++++  i+++++   +  + +++g ++t  +g+++ i l++  + l  ++  l+++l+ l++ g+++ + 
  CTQ26192.1 274 TRLGTGCVPFLMPLMLQVGFGYPAIIAGCMIAPtAIGSIIAKSTVTQVLRWFGYRKTL-VGITVFIGLMIAQFSLqsPEMPLWMLLLPLFVLGMAMSTQ 371
                 4444444444444444444454444444455554677778888889999999988875.5677777777777777677788889999999999998886 PP

       MFS_2 332 allp.wsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsaf.gyrakasvqspqvvlalrllyavlpavlll 414
                 ++++ + +lad++D+++        ++  ++l+ +++l + +g+++s+++L ++ g+ + as++++   + +++ +++++++l++
  CTQ26192.1 372 FTAMnTITLADLTDDNA--------SSGNSLLAVTQQLSISLGVAISAAVLRFYeGF-DNASTVQQFHYTFITMGVITIISALMF 447
                 6665267799****998........77789999*********************9**.666666666666677766666666654 PP

>> Saf_2TM  SAVED-fused 2TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.21   7.6e+02      70     105 ..      53      83 ..      27     123 .. 0.65
   2 ?    1.7   0.8     0.049   1.8e+02      18      78 ..     306     368 ..     300     374 .. 0.86
   3 ?    9.4   0.4   0.00021      0.76      29      93 ..     391     454 ..     388     462 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.21
     Saf_2TM  70 iilvigvllivvGavllilryvneakrqskkkvivI 105
                 i+ +++v++++    +l  r+      + + ++i++
  CTQ26192.1  53 ISYTLTVAMLIPVSGWLADRF-----GTRRVFIIAV 83 
                 334444444443334666655.....4444444444 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.049
     Saf_2TM  18 krsaelllftigvalllailgt.dwalkialklaggslevsfssse.ipeivlaiilvigvll 78 
                 ++++++++ +  v+ +l  +g  ++++ i + ++    + s++s e + +++l+ ++v+g+++
  CTQ26192.1 306 PTAIGSIIAKSTVTQVLRWFGYrKTLVGITVFIGLMIAQFSLQSPEmPLWMLLLPLFVLGMAM 368
                 67788999999999999999998888999999999999999*****88899999999999887 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00021
     Saf_2TM  29 gvalllailgtdwalkialklaggslevsfssseipeivlaiilvigvllivvGavllilryvne 93 
                 g +ll  +   +++l +a+  a  ++ ++f+++++++ + ++ ++ gv++i+  ++ ++lr+ ++
  CTQ26192.1 391 GNSLLAVTQQLSISLGVAISAAVLRFYEGFDNASTVQQFHYTFITMGVITIISALMFMLLRA-KD 454
                 77788888888999********9*******************************99999999.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3615.33
//
Query:       CTQ26193.1  [L=233]
Description: putative transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-21   74.6   0.4    1.5e-20   73.9   0.4    1.4  1  FCD            FCD domain
    2.9e-19   68.5   0.5    1.3e-18   66.4   0.3    2.2  2  GntR           Bacterial regulatory proteins, gntR family
    4.3e-05   23.4   0.1    0.00033   20.5   0.0    2.2  2  HTH_11         HTH domain
     0.0048   16.5   0.1       0.04   13.5   0.0    2.0  2  ComR_TPR       ComR tetratricopeptide
     0.0076   16.2   0.0      0.011   15.6   0.0    1.3  1  FadR_C         FadR C-terminal domain
  ------ inclusion threshold ------
      0.041   14.1   0.0        0.1   12.8   0.0    1.6  1  PaaX           PaaX-like protein
      0.051   13.1   0.0       0.13   11.9   0.0    1.7  1  HTH_24         Winged helix-turn-helix DNA-binding
       0.12   12.2   0.0       0.25   11.2   0.0    1.6  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
       0.14   12.0   0.0       0.35   10.7   0.0    1.7  1  HTH_IclR       IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.4   7.6e-24   1.5e-20       3     124 ..     108     226 ..     106     227 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 7.6e-24
         FCD   3 yelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlalssperleeslaeHr 101
                 + +R  LEp a  laa ++t+ + a+l  l+e++++  ++ ++e+++e d+a+H+ ++e++gnp+l+++ + ++ + + +  +     ++    l+ H+
  CTQ26193.1 108 LVMRSSLEPQACFLAAANGTAGQKAQLNTLMEEMIALKRHFQRERWIEVDMAWHEHIYEMSGNPFLSSFASLFHSVYHTYFTS---ITQNEVVKLDLHQ 203
                 679****************************************************************9999999999988887...79999******** PP

         FCD 102 aildAirardadaAraamrrHle 124
                 ai+dAi++ da +A  a+++ l+
  CTQ26193.1 204 AIVDAILNSDAPGALLACQALLN 226
                 *************9999988876 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.7   1.4e+03      24      38 ..       3      16 ..       1      17 [. 0.84
   2 !   66.4   0.3   6.6e-22   1.3e-18       5      64 .]      18      77 ..      15      77 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.7
                ---HHHHHHHHTS-H CS
        GntR 24 LPsereLaaefgVsr 38
                L s ++Laa+ ++s+
  CTQ26193.1  3 L-SAQQLAAQKNISW 16
                6.7899****99997 PP

  == domain 2  score: 66.4 bits;  conditional E-value: 6.6e-22
                HHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  5 vyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                ++e+L ++Il+ge++p+++LP e+eL ++fgVsrt vReA ++L+a+g++  r++ Gt+V
  CTQ26193.1 18 LAEKLAQKILTGEYQPESILPGEMELGEQFGVSRTAVREAVKTLTAKGMLLPRPRIGTRV 77
                589*******************************************************98 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.51     1e+03      16      28 ..       3      15 ..       2      26 .. 0.80
   2 !   20.5   0.0   1.7e-07   0.00033      20      44 ..      42      66 ..      40      70 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.51
      HTH_11 16 isgeeLAeeLnvS 28
                +s+++LA + n+S
  CTQ26193.1  3 LSAQQLAAQKNIS 15
                6888888887777 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 1.7e-07
      HTH_11 20 eLAeeLnvSrrtvrrdIkaLeelgv 44
                eL e+++vSr++vr  +k+L+++g+
  CTQ26193.1 42 ELGEQFGVSRTAVREAVKTLTAKGM 66
                89********************995 PP

>> ComR_TPR  ComR tetratricopeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.16   3.2e+02     107     139 ..     127     159 ..     117     168 .. 0.83
   2 !   13.5   0.0     2e-05      0.04      27      63 ..     177     213 ..     161     219 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.16
                 HHH..HHHHHHHHHHHHHTTTS-GGGHHHHHHH CS
    ComR_TPR 107 klfdkklfeklvekllnqeesleeedlfllrdv 139
                 ++ +k+++++l+e+++  ++++++e+++ ++ +
  CTQ26193.1 127 TAGQKAQLNTLMEEMIALKRHFQRERWIEVDMA 159
                 56678999******************9998765 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2e-05
                 HHHHHHHHHHTGGGS-HHHHHHHHHHH-----SS--S CS
    ComR_TPR  27 eelfdeifekyydnLPeeEqliidllqsildvlesen 63 
                  +lf  ++++y+ ++ ++E + +dl q+i+d++ +++
  CTQ26193.1 177 ASLFHSVYHTYFTSITQNEVVKLDLHQAIVDAILNSD 213
                 5799***************************998776 PP

>> FadR_C  FadR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.6e-06     0.011      18     117 ..      95     196 ..      77     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.6e-06
      FadR_C  18 ldedkvpelvedllsaRtnis..aiyireavkn..npekslevlaevkeledk..aeafaefDYklfrelafasgnkiYvLilNglkklYsrvgslyFs 110
                 l ed+++e+v++ l +R+ +   a ++ +a  +  ++++   +++e+  l+ +   e + e D   ++++  +sgn++    l ++ +l++ v ++yF+
  CTQ26193.1  95 LTEDNFEEVVSHFLVMRSSLEpqACFLAAANGTagQKAQLNTLMEEMIALKRHfqRERWIEVDMAWHEHIYEMSGNPF----LSSFASLFHSVYHTYFT 189
                 67899*************9972245777665541144555788888888888766899*******************6....89**************9 PP

      FadR_C 111 neearel 117
                 + ++ e+
  CTQ26193.1 190 SITQNEV 196
                 8776654 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.1e-05       0.1      28      56 ..      42      70 ..      31      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.1e-05
        PaaX 28 rllaelGiseslvRaalsRlakaGwlvre 56
                +l +++G+s ++vR a+  l+++G l + 
  CTQ26193.1 42 ELGEQFGVSRTAVREAVKTLTAKGMLLPR 70
                6889********************99764 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.3e-05      0.13      22      46 ..      42      66 ..      42      67 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.3e-05
      HTH_24 22 eLAerlglSpstvnrrlkrLeeeGl 46
                eL e+ g+S+++v++ +k L+ +G 
  CTQ26193.1 42 ELGEQFGVSRTAVREAVKTLTAKGM 66
                899********************96 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.25      22      41 ..      42      61 ..      41      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
  HTH_AsnC-type 22 eLAervGlSestvlrRvrrL 41
                   eL+e+ G+S+++v++ v+ L
     CTQ26193.1 42 ELGEQFGVSRTAVREAVKTL 61
                   8**************99876 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00017      0.35      23      48 ..      42      67 ..      37      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
                HHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR 23 elArrtglpkStvhRlLqtLvelGyv 48
                el +++g+++++v+  ++tL+  G++
  CTQ26193.1 42 ELGEQFGVSRTAVREAVKTLTAKGML 67
                899*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1799.65
//
Query:       CTQ26194.1  [L=192]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-35  122.5   3.7    4.3e-35  122.3   3.7    1.0  1  LamB           LamB porin
     0.0017   18.5   3.3     0.0017   18.5   3.3    1.9  2  OMP_b-brl      Outer membrane protein beta-barrel domain
  ------ inclusion threshold ------
      0.069   13.1   0.4        1.2    9.1   0.1    2.4  2  Inhibitor_I36  Peptidase inhibitor family I36


Domain annotation for each model (and alignments):
>> LamB  LamB porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   3.7   7.2e-39   4.3e-35     182     379 .]       2     192 .]       1     192 [] 0.89

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 7.2e-39
                 EEEEEEEE--T-TT---EEE..EEEEEEEEEETTEEEEEEEEEEECCCTT-SS---TTE----....EEEEEEEEEEEEEETTTEEEEEEEEEEEEEE. CS
        LamB 182 gldyaranksdakkaakdgv..mltlehtqsflggfnklalqygtglgaenkgggsggelnnaaekdakslrlleqgvvqlsdkfslayavvyqksddr 278
                 +++y++++k+ +++a  +++  +l l+ht++   g+nk++l+y++++ +        + +n + ++d ++++   +g  +++++ +++y++++++ d++
  CTQ26194.1   2 YANYGFDSKAVDSDARLEAWqgGLVLSHTND--SGVNKVILRYSDNSDN--------SVYN-K-TDDLTTVYASFEGSHKFTQQAQVEYLLAFHDYDNG 88 
                 6899999999999999999999999999994..5*************33........2233.2.35789****************************** PP

                 .TTS--EEEEEEEEEEEEECCTTEEEEEEEEEEEEE.....E.EEEEEEEEEEEESSSSTT-SSEEEEEEEEEEEEESEEETGGGSB-SS-EEEEEEEE CS
        LamB 279 ydngddkkwlsagvRpvykltdnfklllElgydrvk.....kgnlyKlTlaptlkagsgfwsRPelRlfatyakwneaakdalskagakkgdtseltfG 372
                 +dn d++k++ a+vRp+y ++d+++++lE+gy+rv+     +++ +KlTl++++++g+g   RP+lR+++t  + +++   +   +g+++++ ++l++G
  CTQ26194.1  89 KDNTDNRKNYGAIVRPMYFWNDVHSTWLEAGYQRVDydqggDNHGWKLTLSQNIAIGMGPEFRPMLRFYVTGGQVDNEHTAK--VNGTQDQQLDSLNVG 185
                 ************************************7654437*******************************77776663..56777888999**** PP

                 EEEEEEE CS
        LamB 373 vqaEaWW 379
                  ++EaW+
  CTQ26194.1 186 GMFEAWF 192
                 ******9 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.8      0.15   8.9e+02      30      74 ..       4      53 ..       1      71 [. 0.50
   2 !   18.5   3.3   2.8e-07    0.0017      22     122 ..      74     175 ..      57     189 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.15
   OMP_b-brl 30 lskvkvdgvgsds...gfgfgvgagyefnd..nvgvegglsysgd.kdysg 74
                ++ +++++v+sd+    +++g+ +  ++nd     v +++s ++d   y++
  CTQ26194.1  4 NYGFDSKAVDSDArleAWQGGLVL-SHTNDsgVNKVILRYSDNSDnSVYNK 53
                444555555555533223333333.35566555777788877554244444 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 2.8e-07
   OMP_b-brl  22 fyvggglglskvkvdgvgsds..gfgfgvgagyefndnvgvegglsysgdkdysgsgktdikinlls.vpvnagyafnlsdsvlpyggaGlgytkvevd 117
                 ++v+  l++ +++++ +++d+  ++g  v+ +y++nd  +  ++++y++ ++++g+++  +k +l + + + +g  f+  + ++ y+++G   ++ + +
  CTQ26194.1  74 AQVEYLLAFHDYDNGKDNTDNrkNYGAIVRPMYFWNDVHSTWLEAGYQRVDYDQGGDNHGWKLTLSQnIAIGMGPEFR--PMLRFYVTGGQVDNEHTAK 170
                 45666677778888666666522577778888*****98888888888888888875555553333348888888888..569*******999999999 PP

   OMP_b-brl 118 vsgng 122
                 v+g++
  CTQ26194.1 171 VNGTQ 175
                 99883 PP

>> Inhibitor_I36  Peptidase inhibitor family I36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1    0.0002       1.2      33      59 ..      33      63 ..      10      71 .. 0.78
   2 ?    1.6   0.0     0.044   2.6e+02      22      52 ..     130     176 ..     120     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0002
  Inhibitor_I36 33 a....avganmndnarSvwNrtgsrvtvYtd 59
                   +    +  ++ ++   Sv+N t+   tvY +
     CTQ26194.1 33 SgvnkVILRYSDNSDNSVYNKTDDLTTVYAS 63
                   234456677889999**************65 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.044
  Inhibitor_I36  22 t..Gtraelsgssa..............avganmndnarSvwNrtgs 52 
                    +  G   +ls++ a              ++g++++++  + +N+t+ 
     CTQ26194.1 130 DnhGWKLTLSQNIAigmgpefrpmlrfyVTGGQVDNEHTAKVNGTQD 176
                    24477777888887999999999999998899999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1441.92
//
Query:       CTQ26195.1  [L=319]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-40  137.1   1.2    4.3e-40  136.6   1.2    1.2  1  DUF1722   Protein of unknown function (DUF1722)
    2.4e-37  128.0   0.0      4e-37  127.3   0.0    1.4  1  DUF523    Protein of unknown function (DUF523)
  ------ inclusion threshold ------
      0.024   14.6   0.0      0.037   13.9   0.0    1.2  1  DUF3385   Domain of unknown function (DUF3385)


Domain annotation for each model (and alignments):
>> DUF1722  Protein of unknown function (DUF1722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   1.2   7.3e-44   4.3e-40       1     117 []     192     309 ..     192     309 .. 0.98

  Alignments for each domain:
  == domain 1  score: 136.6 bits;  conditional E-value: 7.3e-44
     DUF1722   1 Kyllmahsqkeyrelgrlvanakk.epleelaeeYeellmealskpatrkkhinvlqhilgyfkkklsaeekqelleliekYregkvplsvpltlLkhy 98 
                 K++l+ah+q+ yr++g +va+ ++ e+le+++e Y+e+lm +l++pa+rk+h+nvl+hi+gyf+++l+++++ el e+i +Yr g++p+ +pltlLkhy
  CTQ26195.1 192 KLQLLAHHQAGYRQIGPFVASLHEwEDLEAFFEVYREKLMAILKQPASRKNHTNVLMHIQGYFRSQLNSRQRGELREVILNYRAGLLPILAPLTLLKHY 290
                 99******************9877699************************************************************************ PP

     DUF1722  99 arkydneylleqtylnpyP 117
                 +++y++ yl+ q y++pyP
  CTQ26195.1 291 LAEYPDRYLQAQNYFDPYP 309
                 ******************9 PP

>> DUF523  Protein of unknown function (DUF523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   0.0   6.8e-41     4e-37       1     137 []       7     149 ..       7     149 .. 0.95

  Alignments for each domain:
  == domain 1  score: 127.3 bits;  conditional E-value: 6.8e-41
      DUF523   1 ilvSaCLlgekvrydgkakksevleeelkelvkeelvpvCPEvaggLptPRepael........akrvlkkegedvtealekgaeealeelkeeeikga 91 
                 i++S CL+g++vr+dg++k+  ++ +el+++v   + pvCPE+a+gLp+PR++++l        ++r+ ++ +edvte+++++a++ l++l e  ++g+
  CTQ26195.1   7 IGISGCLTGSAVRFDGGHKRMGFVMDELAQWV--AFKPVCPEMAIGLPVPRPALRLvqtpvgeiRMRFSHAPHEDVTEKMADFASAHLATLGE--LSGF 101
                 79******************************..****************************77667888888****************9995..**** PP

      DUF523  92 ilkekSPSCGveki..YdgtfskklvegeGvfaallkeegievpseee 137
                 i+++kSPSCG+e++  Yd + ++ ++eg G+f+ +l+++++++p+ee+
  CTQ26195.1 102 IVCAKSPSCGMERVrlYDEKGNRGRKEGVGLFTGALMARYPWLPVEED 149
                 *****************98888889********************986 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.1e-06     0.037      80     131 ..     219     271 ..     189     277 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.1e-06
     DUF3385  80 eeyyptvvinaLlrilkdpslsshhaavveaimnifkt.lglkcvpfLdqiip 131
                  e +  v  ++L++ilk+p+ +++h++v+  i   f++ l++++   L+++i 
  CTQ26195.1 219 LEAFFEVYREKLMAILKQPASRKNHTNVLMHIQGYFRSqLNSRQRGELREVIL 271
                 688889999***********************999998678888889998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2491.27
//
Query:       CTQ26196.1  [L=183]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-67  226.3   1.4    1.7e-67  226.1   1.4    1.0  1  DUF3833   Protein of unknown function (DUF3833)
  ------ inclusion threshold ------
      0.034   14.3   0.0      0.053   13.7   0.0    1.3  1  DUF4150   Domain of unknown function (DUF4150)
      0.034   14.5   0.0       0.06   13.7   0.0    1.4  1  NOD2_WH   NOD2 winged helix domain
       0.42   11.2  10.4       0.12   13.0   4.6    2.3  2  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> DUF3833  Protein of unknown function (DUF3833)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.1   1.4   3.8e-71   1.7e-67       2     163 .]      14     174 ..      13     174 .. 0.98

  Alignments for each domain:
  == domain 1  score: 226.1 bits;  conditional E-value: 3.8e-71
     DUF3833   2 lllagcssakvedyaeekpkldleeyfnGklkaeGlvqdrsgkvvrrFkvdiegswegdeltLdEdfvyddgekqkRiWtltkeedgkyegtAdDvvge 100
                 l+lagc s++v++y++++p+ld+ +yf+G+++a+G+vqdrsgk+ rrF+v+i+g++ gd+ltL+E+fvyddgekq+R+W++++++d++y+gtA+D+ g 
  CTQ26196.1  14 LILAGC-STEVTEYRQQQPALDIFHYFQGRTEAWGMVQDRSGKQLRRFHVEIDGDVVGDTLTLHERFVYDDGEKQQRVWRIRRTGDNRYQGTAGDIEGV 111
                 789***.788***************************************************************************************** PP

     DUF3833 101 akgeaaGnalnwkYtlklpvdgktlevkfdDwmylvdekvllnraklkkfGievgevtlvfek 163
                 a+g+aaGna++w+Y+++++++g+++ ++fdDwm+l+d ++l+n++++kkfGi+v++vtl+f++
  CTQ26196.1 112 ASGQAAGNAFHWRYSMNVEASGSRWLLHFDDWMFLQDGSHLFNKTEMKKFGITVATVTLFFTR 174
                 ************************************************************986 PP

>> DUF4150  Domain of unknown function (DUF4150)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.2e-05     0.053      60      97 ..     104     141 ..      92     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
     DUF4150  60 epGtagGvvSgtvkgkaeflsgsfdvkiegkpavrltd 97 
                  +G   Gv+Sg+  g+a ++ +s++v + g     ++d
  CTQ26196.1 104 TAGDIEGVASGQAAGNAFHWRYSMNVEASGSRWLLHFD 141
                 47888**********************99988777776 PP

>> NOD2_WH  NOD2 winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.3e-05      0.06      14      43 ..     146     175 ..     145     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
     NOD2_WH  14 LekgklvFseedLkeygldesdlssgllte 43 
                 L+ g+++F++ ++k++g++++ +++++ + 
  CTQ26196.1 146 LQDGSHLFNKTEMKKFGITVATVTLFFTRT 175
                 78899********************99875 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   4.6   2.6e-05      0.12       1      18 []       1      20 [.       1      20 [. 0.96
   2 ?    1.2   0.3      0.14   6.2e+02       1      10 [.     158     168 ..     158     172 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
      LPAM_1  1 MKKi..llalgalllLsGCs 18
                MK+i  l +++++l+L+GCs
  CTQ26196.1  1 MKRIltLGLALLMLILAGCS 20
                9***99999**********9 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.14
      LPAM_1   1 MKKi.llalga 10 
                 MKK+ + +++ 
  CTQ26196.1 158 MKKFgITVATV 168
                 99999555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1396.57
//
Query:       CTQ26197.1  [L=174]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.016   15.3   0.0      0.022   14.9   0.0    1.2  1  Chalcone_3  Chalcone isomerase-like


Domain annotation for each model (and alignments):
>> Chalcone_3  Chalcone isomerase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.2e-06     0.022      49     165 .]      48     171 ..      40     171 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-06
  Chalcone_3  49 aeailaaeekairleils.rdvsseklkkaleegfekntaeelaelkariekfkalfakevkkgdvitldylpgkgvvvvvn......gkqlgtieged 140
                 ++  ++ +++ + l i++ rd+++e l++a+++  +++   + +  ++   ++ + +  +v  g ++ +++  g+g   +         ++lg+ + ++
  CTQ26197.1  48 PNGRYDGPQQDRALIITYrRDIDREALVEATRDQWQAQGILQQEPRSEAWLRMLQGIWPDVAPGSQLAFVVRGGEGQFWYRAsaaqtaFTPLGPRQSAA 146
                 555667788888899998577**************9976555555555555666656679***********999996544431111113456778999* PP

  Chalcone_3 141 fakAllkiwLGekPadkkLKkaLLG 165
                 f+  +l+iwL  + +  +L+++L G
  CTQ26197.1 147 FSTRFLAIWLDPRTTYPELRQQLIG 171
                 **********************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1294.76
//
Query:       CTQ26198.1  [L=161]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-27   95.2  30.3    4.9e-27   95.0  30.3    1.0  1  DUF2878   Protein of unknown function (DUF2878)


Domain annotation for each model (and alignments):
>> DUF2878  Protein of unknown function (DUF2878)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0  30.3   2.7e-31   4.9e-27       2     155 .]       8     152 ..       7     152 .. 0.96

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 2.7e-31
     DUF2878   2 linallfqlgWlaavlgaarglllllllllllllllhlalspsrkaelklllavlllGlllDslllalgvlsfaalsasllPlWlllLWllfaltlnhs 100
                 l++al+f+++W+++v++++rgll++l+l+++++l      +p++++  +ll  ++++G+ lD++++ +g+++f+   +sllPlW+++LWl+fa+++  +
  CTQ26198.1   8 LLMALAFDVYWTLVVMLRERGLLIWLTLAIFAWLR-----LPAASRPPALL--LAAAGCGLDACWALAGLIDFRG--DSLLPLWMVALWLMFAVVWTRL 97 
                 7899*********************9999999999.....88888888888..8999******************..********************** PP

     DUF2878 101 lawlrkrpllaallgavggplsYlaGaklgavtlglpllltllilalvWavllpl 155
                  ++ +   +++a+ ++vggp++Yl+Ga+lga+tl  p++l ++++a++W+vl+ l
  CTQ26198.1  98 TRTATLPGWVLATAATVGGPVAYLIGARLGAMTLLVPTALGVAAMACGWLVLMLL 152
                 ****************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1144.65
//
Query:       CTQ26199.1  [L=406]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-89  297.9   0.1    7.9e-89  297.6   0.1    1.0  1  CMAS             Mycolic acid cyclopropane synthetase
    2.6e-10   40.8   0.0    8.5e-10   39.2   0.0    1.9  2  Methyltransf_25  Methyltransferase domain
    3.6e-10   40.3   0.0    3.3e-09   37.3   0.0    2.4  2  Methyltransf_11  Methyltransferase domain
    2.2e-09   37.4   0.0    1.3e-08   34.9   0.0    2.2  2  Methyltransf_23  Methyltransferase domain
    8.9e-06   26.4   0.0    2.2e-05   25.1   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
    0.00081   19.2   0.0     0.0013   18.5   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
  ------ inclusion threshold ------
      0.019   14.5   0.0      0.033   13.7   0.0    1.3  1  MTS              Methyltransferase small domain
      0.036   13.3   0.0      0.058   12.7   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
      0.062   14.3   0.3       0.49   11.4   0.1    2.5  2  Methyltransf_24  Methyltransferase domain


Domain annotation for each model (and alignments):
>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.6   0.1   3.9e-92   7.9e-89       3     273 .]     130     401 ..     128     401 .. 0.97

  Alignments for each domain:
  == domain 1  score: 297.6 bits;  conditional E-value: 3.9e-92
                 SXXXHHHHHHHHTS-HHHHCTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHH CS
        CMAS   3 kkkevenikahYDlsndffalfldptmtYsCAyferddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqakla 101
                 + +++eni+ahYDl+n+f+a fld+++ Ys A f++d+++L +Aq+aK+ +++++l l+pG++lL+iG+GWG+l+ +a+++y+ +v   TlS+eq+++a
  CTQ26199.1 130 RAQARENIAAHYDLGNEFYAHFLDDDLLYSSALFTDDEQDLTQAQRAKMARLCDQLALNPGDHLLEIGTGWGALAEYAARHYGCRVTTTTLSREQHRWA 228
                 56889********************************************************************************************** PP

                 HHHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHH CS
        CMAS 102 kkrvdeldlerkvevklldyedldekvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhkkelaerglklkfidkeiFPgGelpsiee 200
                  +r+++++l+++vev+l+dy+dl++++d++vsv+++e+vg++ +++ff++++  l+++G ++l++it+++++ +   + ++ fi+++iFPgG lpsi++
  CTQ26199.1 229 TERMARAGLQDRVEVLLCDYRDLRGEYDKLVSVEMIEAVGQRYLPAFFRTCQARLRPGGKMALQAITIQDQRYRDYSK-SVDFIQRYIFPGGFLPSITA 326
                 **********************************************************************99998555.66****************** PP

                 HHH.HHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHHHHH.SHHHHHHHHHHHHHHHHHHHHTTSCEEEEE CS
        CMAS 201 iee.eiseagftvvdveslrahYakTLkaWaealqenkdeaial.vseevarmyelYLagcaeaFrkgyidvaql 273
                 ++e  +++++f v +   ++++Ya+TL +W+++++++++++ +l ++e++ rm+ +Y+ +c++ F++++i v+ql
  CTQ26199.1 327 MSElMTRHTDFVVRNLFDMGPDYARTLAHWRQRFTHAWQDIEKLgFDERFRRMWLYYFGYCEAGFNARTISVVQL 401
                 ***77889****************************************************************995 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   4.3e-13   8.5e-10       2      97 .]     194     287 ..     193     287 .. 0.97
   2 ?   -3.5   0.0         9   1.8e+04      46      62 ..     358     374 ..     344     383 .. 0.59

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 4.3e-13
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      L++G+G G l++++a+++g ++vt + +s e+ + a er++++gl  +ve++ +d +dl    g++D  vs+ +++ + ++ l+++++ +   L
       CTQ26199.1 194 LEIGTGWGALAEYAARHYG-CRVTTTTLSREQHRWATERMARAGLqdRVEVLLCDYRDLR---GEYDKLVSVEMIEAVGQRYLPAFFRTCQARL 283
                      89****************8.***************************************8...789*****999******************** PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      +pgG
       CTQ26199.1 284 RPGG 287
                      ***9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 9
                      TTEEEEESBCCGBSSST CS
  Methyltransf_25  46 lnvefvqgdaedlpfed 62 
                       +++   +d+e+l f++
       CTQ26199.1 358 QRFTHAWQDIEKLGFDE 374
                      34444556777777765 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.8   1.6e+03      72      91 ..      44      63 ..      38      66 .. 0.86
   2 !   37.3   0.0   1.7e-12   3.3e-09       1      95 [.     194     290 ..     194     291 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.8
                     CC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11 72 hhvedpekalkeiaRvLkpg 91
                     +h+ dp++al+  aRv+ p+
       CTQ26199.1 44 FHFGDPAAALRAEARVCTPE 63
                     57889***********9996 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 1.7e-12
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvLk 89 
                      L++G+G G+lae+ a+++ +rv+++ ls e++++a e+  ++gl  +ve++ +d ++l    + +D  vs e+++ v    + ++++ +   L+
       CTQ26199.1 194 LEIGTGWGALAEYAARHYgCRVTTTTLSREQHRWATERMARAGLqdRVEVLLCDYRDL---RGEYDKLVSVEMIEAVgqRYLPAFFRTCQARLR 284
                      89*************8888************************9999999******96...4799*************999************* PP

                      EEEEEE CS
  Methyltransf_11  90 pgGllv 95 
                      pgG+++
       CTQ26199.1 285 PGGKMA 290
                      ***986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.93   1.9e+03      94     122 ..      45      73 ..      43     129 .. 0.72
   2 !   34.9   0.0   6.4e-12   1.3e-08       6     123 ..     175     297 ..     169     366 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.93
  Methyltransf_23  94 hvpdppellrqiatllkpgGylllsepla 122
                      h+ dp+++lr  a+ + p+ y  l++ ++
       CTQ26199.1  45 HFGDPAAALRAEARVCTPEVYWRLLTGGS 73 
                      77889999998888888888877776543 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 6.4e-12
  Methyltransf_23   6 eeelsdklerllpklraggrvLdiGcGtGillevl.rengfsvtgvDlspeaveiaekakkaqkdqfdeq....eaaepqgkfdlIvlrevleh 94 
                      + +++++ ++l+  l++g  +L+iG+G G l+e++ r +g+ vt   ls+e++ +a ++      q + +    + ++  g +d  v+ e++e 
       CTQ26199.1 175 RAKMARLCDQLA--LNPGDHLLEIGTGWGALAEYAaRHYGCRVTTTTLSREQHRWATERMARAGLQDRVEvllcDYRDLRGEYDKLVSVEMIEA 266
                      356778888888..9********************7788****************97444444444444455556777999************* PP

  Methyltransf_23  95 vp..dppellrqiatllkpgGylllseplas 123
                      v   ++p+ +r+ ++ l+pgG + l+ ++  
       CTQ26199.1 267 VGqrYLPAFFRTCQARLRPGGKMALQAITIQ 297
                      *9656******************99986544 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.1e-08   2.2e-05       1      98 [.     194     288 ..     194     289 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.1e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnirkl 92 
                      LeiG+G G+l+++ +++  ++++t + +s+++   a e++a+ + ++  +ve+  +d  dl g   +D  v+ + ++++  + + ++++ + + 
       CTQ26199.1 194 LEIGTGWGALAEYAARH-YGCRVTTTTLSREQHRWATERMARAGLQD--RVEVLLCDYRDLRG--EYDKLVSVEMIEAVgqRYLPAFFRTCQAR 282
                      8**************99.************************99966..66666666655555..9**************************** PP

  Methyltransf_12  93 LkpgGr 98 
                      L+pgG+
       CTQ26199.1 283 LRPGGK 288
                      *****7 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   6.5e-07    0.0013      53     132 ..     169     247 ..     145     315 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.5e-07
                 TEEE--HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES- CS
        PCMT  53 natiSaphmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgD 132
                 + t  +   +a++++ l l++g++ Le+G+G G l+   ar  g   rv +   ++e  + a++++ + +l+ +v v   D
  CTQ26199.1 169 DLTQAQRAKMARLCDQLALNPGDHLLEIGTGWGALAEYAARHYGC--RVTTTTLSREQHRWATERMARAGLQdRVEVLLCD 247
                 567788899**************************9999987764..4555556666667777777777766566666555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.7e-05     0.033      23     137 ..     181     291 ..     170     308 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
                 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHH CS
         MTS  23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdlivsNPPfhagkatelavae 119
                 L ++l  +  +++l +G+G+G+l+  +a+++   +vt +  + +  + a+e +++ +l+  vev+ +d   ++  +++d +vs   +    a+ ++   
  CTQ26199.1 181 LCDQLALNPGDHLLEIGTGWGALAEYAARHYGC-RVTTTTLSREQHRWATERMARAGLQdrVEVLLCDYR-DLR-GEYDKLVSVEMIE---AVGQRYLP 273
                 566777778899************999998876.899999999999999999999999999999999965.566.7******965555...5555999* PP

                 HHHHHHHHHEEEEEEEEE CS
         MTS 120 eliaeAkeaLkegGeLli 137
                 +++++ +++L++gG++ +
  CTQ26199.1 274 AFFRTCQARLRPGGKMAL 291
                 **************9875 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.9e-05     0.058      41     180 ..     168     307 ..     143     334 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.9e-05
                     HHHHTTHHHHHHHHHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHH.HHHHHHHS.-----TTEEEEES-TTTS-----SEEEE CS
  Methyltransf_2  41 kglqessslvakkvleafdleglkslvDvGGGtGalakaivsayPtikvivfDlpeV.veaAkehl.sageeervefvgGdffkdslPeaDaill 133
                     + l++ ++  ++++  + +l++  +l+++G G Gala+ ++++y +++v+   l++   + A e++  ag+++rve+   d++ d   e D ++ 
      CTQ26199.1 168 QDLTQAQRAKMARLCDQLALNPGDHLLEIGTGWGALAEYAARHY-GCRVTTTTLSREqHRWATERMaRAGLQDRVEVLLCDYR-DLRGEYDKLVS 260
                     5677788888999999999*************************.68888888875414557777779999999999999999.66678898888 PP

                     ESSGGGS-HHHHHHHHHHHHHH--TT-EEEEEE----TTS---HHHH CS
  Methyltransf_2 134 krvlhDwsdekcvklLkrvkkalpagGkvivveavlgadpsgelete 180
                     + ++    +     + + ++  l++gGk+ +    ++ ++ ++ ++ 
      CTQ26199.1 261 VEMIEAVGQRYLPAFFRTCQARLRPGGKMALQAITIQDQRYRDYSKS 307
                     88899999999999999999999999998887666666666655554 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.1   2.1e+03      13      24 ..      92     116 ..      50     179 .. 0.64
   2 ?   11.4   0.1   0.00025      0.49       1     100 [.     194     288 ..     194     292 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.1
  Methyltransf_24  13 wllralrrnga.............g 24 
                      +ll+ l rng+              
       CTQ26199.1  92 ALLQILARNGEvlgrlergfrllgK 116
                      4555555555544444444433332 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00025
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalareaglddrvrlikadseealaslaagsiDllfiDgghaaeavled.leallp 93 
                      +EiG+  G  + + +r    + +++ ++ + ++    a++ +++agl+drv+++  d ++++++ + + + + +i +  +++++l++ +++++ 
       CTQ26199.1 194 LEIGTGWGALAEYAARHYGCRVTTTTLSREQHR---WATERMARAGLQDRVEVLLCDYRDLRGEYD-KLVSVEMIEA--VGQRYLPAfFRTCQA 281
                      799955555444444444444444444444444...355666668****************99999.7677777774..466666553799999 PP

  Methyltransf_24  94 rlapggv 100
                      rl+pgg 
       CTQ26199.1 282 RLRPGGK 288
                      9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3143.68
//
Query:       CTQ26200.1  [L=240]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-73  247.3   1.5    1.8e-73  247.2   1.5    1.0  1  DUF1365   Protein of unknown function (DUF1365)


Domain annotation for each model (and alignments):
>> DUF1365  Protein of unknown function (DUF1365)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.2   1.5   9.9e-78   1.8e-73       1     238 [.       5     233 ..       5     235 .. 0.94

  Alignments for each domain:
  == domain 1  score: 247.2 bits;  conditional E-value: 9.9e-78
     DUF1365   1 lyegsvrHaRllpvkhaFsYplllllldldeleel..rlfsrnrlallslrdedyldkkestslkekleellaeeggeeeelgkvwlltmprvlGyvfn 97 
                 ly+g  rH+Rl+p++h+F Y+l++ +ldldel++l  + ++rnrla    +d+dy   ++  +lk+++ ++l++ +g ++  g+v+llt++r++G++fn
  CTQ26200.1   5 LYHGVLRHRRLQPKAHHFVYRLFMAWLDLDELDRLpeAGIRRNRLAAAAWYDADYPL-GA--PLKAQVLNRLESLTGCRP-AGRVMLLTQLRYFGFHFN 99 
                 699*******************************9999999**************93.34..5*********99888776.6***************** PP

     DUF1365  98 PvsfyycydeekekleavvlEVsNT.fgerhvYvlkadeagkdltfpKeFhVSPFndrdgsYrlrlkdplkeserlavrikllseskekltAtlklerk 195
                 Pv+fyycyde+ ++l+ v++EV+NT ++erh+Y ++    ++    +K+FhVSPFn++d+ Y++r+++p    ++l+++i+++++s ++++Atl+l+r 
  CTQ26200.1 100 PVNFYYCYDEA-DTLRWVLAEVRNTpWNERHYYAVDG---QQARPLEKAFHVSPFNPMDMVYHWRFNAP---GKTLHMHIENHQAS-KVFDATLALSRV 190
                 ********988.89*********************44...345789*********************99...889********887.79********** PP

     DUF1365 196 pltaasllrallryplmtlltvvrIlyqAlkLhlKrlpvyprp 238
                 plt+a+l+ +llr p+mtl+tv++I++qAl+L+lKr+p+y++p
  CTQ26200.1 191 PLTRANLRGLLLRLPMMTLKTVLAIYWQALRLWLKRVPLYNHP 233
                 ******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1972.52
//
Query:       CTQ26201.1  [L=419]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-19   68.0   0.2    5.1e-18   65.6   0.0    1.8  2  Amino_oxidase  Flavin containing amine oxidoreductase
    3.3e-14   52.8   0.7    7.6e-14   51.7   0.2    2.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    5.6e-09   36.0   3.8    6.4e-08   32.6   3.3    2.1  1  DAO            FAD dependent oxidoreductase
    9.1e-05   21.3   0.0      0.041   12.6   0.3    2.1  2  HI0933_like    HI0933-like protein
     0.0003   20.8   0.1       0.19   11.7   0.2    2.3  2  NAD_binding_9  FAD-NAD(P)-binding
    0.00055   19.1   0.8    0.00085   18.5   0.8    1.3  1  FAD_binding_2  FAD binding domain
    0.00089   18.6   0.3     0.0015   17.8   0.3    1.3  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.014   14.7   0.2       0.02   14.1   0.2    1.2  1  Thi4           Thi4 family
       0.13   11.9   0.8       0.42   10.2   0.7    1.7  2  ApbA           Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   2.5e-21   5.1e-18       1     266 [.      10     267 ..      10     304 .. 0.75
   2 ?    0.3   0.0      0.17   3.4e+02     378     451 ..     347     413 ..     304     414 .. 0.64

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 2.5e-21
                    HHHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEET...T.EEEESS--EEET.TTHHHHHHHHHTTCCCCEEEESCC..GCEEEEETTEECC... CS
  Amino_oxidase   1 laGLaaArqLlsaGfdVtvlEardrvGGRirtvrsd...G.ylielGamwftg.agnpllellkelgledslslpdpg..apkrvlskggref... 86 
                    +aGL++A++L+ + ++Vt++Ea   +GG+ +tv      G + i++G+ ++++ +++ +  ll elg+  + + ++++  +p   l+++g+     
     CTQ26201.1  10 IAGLTCAWRLAGH-HQVTLFEAGATPGGHTATVDVAtpqGtWAIDTGFIVYNDrTYPRFMGLLSELGIGGQKTQMSFSvhNPASGLEYNGHSLtsl 104
                    8*********999.**********************9995599**************************999966666555778888888888444 PP

                    .TTEECHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTTT CS
  Amino_oxidase  87 .pgdlspvpaewealleqgalsaellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdps 181
                      ++ + +  ++ +ll+      e ++++   rl+  al+        ++    a+ +++l+r+++++    +++i+p       +  +++    s
     CTQ26201.1 105 fAQRRNLLKPAFWGLLS------EIVRFN---RLAKLALT--------EALDPGATLENFLSRHRFSP-FFARHYILP-------MGAAIWS---S 172
                    33333333333444444......333333...33333333........33344555556778888888.779999999.......7777765...4 PP

                    TCBHHHHTCCCCHHHHHTSCCCEE...........TTHTHHHHHHHHH.TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-HHHH CS
  Amino_oxidase 182 elsaklalpllwelegfggslllp...........rgGlsqlpealae.elrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvplgvl 265
                    +l+++  +pl ++l  f+ +  l+            gG ++ ++al +    +ld+rln++V +++r++ gv ++l +ge  ++D+V+ ++  + +
     CTQ26201.1 173 SLQEMRRFPLPLFLRFFENH-GLLdirdrpqwyvvPGGSREYVRALLArLGDRLDLRLNAPVQQVDRHPAGVILRLASGEA-HFDQVIFACHSAQA 266
                    55555555444444433333.44447789999999***********993334569*************************8.*********88766 PP

                    H CS
  Amino_oxidase 266 k 266
                     
     CTQ26201.1 267 L 267
                    5 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.17
                    STCSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCH.HCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHHHH CS
  Amino_oxidase 378 pepkatlvtrWhtdplargsysyvsvgpghedydplakp.egdprlffAGehtsreypgtvegAilSGlraAari 451
                    p+     +  W      r +y ++ ++p+++  +  +++ +g +r  ++G+++    +g  e+ ++S+l +++ i
     CTQ26201.1 347 PDAPVDDRFVW-----QRFVYEHPLFNPQSWSAQLRREEiNGQQRSWYCGAYWY---NGFHEDGVRSALDVVQGI 413
                    44444444444.....34447777888888888888888889999999999944...555999999999998876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.2   3.8e-17   7.6e-14       1      68 []       5      74 ..       5      74 .. 0.94
   2 ?   -3.0   0.0       4.5   8.9e+03      38      57 ..     379     400 ..     373     406 .. 0.64

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 3.8e-17
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE...TT.CEECTS---EEETTHHHHCHHHHCCC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev...pg.vrvdygahifhgsgyypnvrrllrel 68
                   I+G+G++Gl++A++La + ++v+l+e++  +GG+ a+++v   +g  ++d+g  ++++ + yp+++ ll el
     CTQ26201.1  5 IIGSGIAGLTCAWRLAGH-HQVTLFEAGATPGGHTATVDVatpQGtWAIDTGFIVYND-RTYPRFMGLLSEL 74
                   9***************98.9******************99986458************.78******99886 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.5
                    ECETT..CEECTS---EEETTH CS
  NAD_binding_8  38 yevpg..vrvdygahifhgsgy 57 
                    +e++g  +   +ga +++g+++
     CTQ26201.1 379 EEINGqqRSWYCGAYWYNGFHE 400
                    4554444556678888888764 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   3.3   3.2e-11   6.4e-08       2     200 ..       3     261 ..       2     282 .. 0.52

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 3.2e-11
                 EEEECTSHHHHHHHHHHHHTT.EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH............................................ CS
         DAO   2 vviiGGGiiGlstAyeLarrg.VtllekgdiagsgaSgrnsgllhsglrylpeas............................................ 55 
                 ++iiG+Gi+Gl++A+ La ++ Vtl+e+g  +g ++     +   + ++    +                                             
  CTQ26201.1   3 IAIIGSGIAGLTCAWRLAGHHqVTLFEAGATPGGHTATVDVATPQGTWA-IDTGFivyndrtyprfmgllselgiggqktqmsfsvhnpasgleynghs 100
                 9*****************9989*******99997776666666666663.3322122222223333455555556665555555555555555555554 PP

                 ...........................HHHHHHH.HHH...HHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHHHHHHHHHHHTTTTE..EEEEHHHH CS
         DAO  56 ...........................elarlsl.eal...eelreleeelgididyrrtGllslaadeeelealdkllallleaglda..elldaeev 121
                                            +la+l+l eal   + l+ + +++++   + r   l+++a     + +  +l++ +++ l+   ++++ + +
  CTQ26201.1 101 ltslfaqrrnllkpafwgllseivrfnRLAKLALtEALdpgATLENFLSRHRFSPFFARHYILPMGA-----AIWSSSLQEMRRFPLPLflRFFENHGL 194
                 4444444444444444444443332222222222111122222222223333333333333333332.....111122222222333222256666666 PP

                 HHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEEEEEEEEEE-- CS
         DAO 122 relepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve.rttpgendaadavVnaa 200
                 +++         ++++p+ g    +++++al++++ ++  +++++++v+ ++++    +gv  r ++ge  ++d+v+ a+
  CTQ26201.1 195 LDIRD----RPQWYVVPG-GS---REYVRALLARLGDR-LDLRLNAPVQQVDRH---PAGVIlRLASGEA-HFDQVIFAC 261
                 66663....246777888.44...68888888887666.788888888888665...4444444455544.357888776 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.3     2e-05     0.041       2      36 ..       2      35 ..       1      39 [. 0.90
   2 !    6.4   0.0    0.0016       3.1      74     162 ..     177     261 ..     169     270 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 ++++iG G AGl +A ++ +  ++V+l+e++ ++g
   CTQ26201.1  2 NIAIIGSGIAGLTCAWRL-AGHHQVTLFEAGATPG 35
                 689***************.56789******99887 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0016
                  HHHS-HHHHHHHHHHTT--EEE-STTEEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE-- CS
  HI0933_like  74 lsrftnedlialveelgvelkeedsgrlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAt 162
                  ++rf    +++++e++g+ l ++d+ + + v   +++ v+all++l + + +lrl+  v++v+++  g + +++  ++e + d++++A+
   CTQ26201.1 177 MRRFPLPLFLRFFENHGL-LDIRDRPQWYVVPGGSREYVRALLARLGD-RLDLRLNAPVQQVDRHPAG-VILRL-ASGEAHFDQVIFAC 261
                  56777788999******8.899************************87.68***********999988.89999.899999*****996 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.2   9.5e-05      0.19       1      41 [.       4      38 ..       4      50 .. 0.87
   2 !    6.8   0.0    0.0032       6.3      98     153 ..     212     261 ..     175     263 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.5e-05
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdp.sepgagrv 41
                   ai+G G++Gl+++ rL+ ++      ++tlf+  ++pg g+ 
     CTQ26201.1  4 AIIGSGIAGLTCAWRLAGHH------QVTLFEAgATPG-GHT 38
                   8****************995......9999*9977878.665 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0032
  NAD_binding_9  98 rYlrdlfeellarlpegvtvevhraevvdleeradgqavlladgaslaadaVvLAl 153
                    +Y+r+l+++l +rl    +++ ++a v +++++++g+ ++la+g+  ++d+V+ A+
     CTQ26201.1 212 EYVRALLARLGDRL----DLR-LNAPVQQVDRHPAGVILRLASGE-AHFDQVIFAC 261
                    55555555555555....555.59*************99999986.689***9997 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.8   4.3e-07   0.00085       2      39 ..       3      39 ..       2      42 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.3e-07
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggata 39
                   + +iGsG+AGL++A ++a +  +v++ e +   gg+ta
     CTQ26201.1  3 IAIIGSGIAGLTCAWRLAGHH-QVTLFEAGATPGGHTA 39
                   68*************997665.5*********9**998 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.3   7.4e-07    0.0015       2      38 ..       2      36 ..       1      54 [. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.4e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclng 38
                 ++++iG+G+AGl++a +la   ++vtl+e  g++++g
   CTQ26201.1  2 NIAIIGSGIAGLTCAWRLAG-HHQVTLFE-AGATPGG 36
                 79*****************9.899****5.4444443 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2     1e-05      0.02      19      56 ..       2      37 ..       1      41 [. 0.92

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1e-05
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailersvspGGG 56
                +++i+G+G +GLt+a  la +   +v+++e+  +pGG 
  CTQ26201.1  2 NIAIIGSGIAGLTCAWRLAGH--HQVTLFEAGATPGGH 37
                799****************99..89***********96 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.7   0.00021      0.42       1      27 [.       3      28 ..       3      33 .. 0.84
   2 ?   -1.7   0.0         1     2e+03      64      86 ..     249     271 ..     225     275 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00021
                EEEES-SHHHHHHHHHHHHHTHCEEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtli 27
                iai+G+G  G ++a++L +  ++vtl 
  CTQ26201.1  3 IAIIGSGIAGLTCAWRL-AGHHQVTLF 28
                89***************.445569885 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
                 CCCS-ESEEEE-SSGGGHHHHHH CS
        ApbA  64 selepidlvivtvKayqteeale 86 
                 s  +++d vi+++ + q+ ++l+
  CTQ26201.1 249 SGEAHFDQVIFACHSAQALAMLA 271
                 45689999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.36
# Mc/sec: 3503.40
//
Query:       CTQ26202.1  [L=239]
Description: Oxidoreductase, short-chain dehydrogenase/reductase family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-36  125.6   0.0    2.1e-36  125.2   0.0    1.1  1  adh_short       short chain dehydrogenase
    3.6e-22   79.1   0.0    4.6e-22   78.7   0.0    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    4.6e-11   42.9   0.1    5.9e-11   42.6   0.1    1.1  1  KR              KR domain
      9e-10   38.4   0.0    2.6e-09   36.9   0.0    1.6  1  Epimerase       NAD dependent epimerase/dehydratase family
    5.9e-09   36.1   0.0    7.8e-09   35.7   0.0    1.2  1  NAD_binding_10  NAD(P)H-binding
    0.00055   19.1   0.1    0.00068   18.8   0.1    1.2  1  RmlD_sub_bind   RmlD substrate binding domain
     0.0029   18.1   0.0     0.0075   16.8   0.0    1.7  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
     0.0043   16.5   0.1      0.021   14.2   0.1    1.9  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
      0.094   12.3   0.0       0.13   11.8   0.0    1.2  1  NmrA            NmrA-like family
      0.096   12.2   0.0       0.22   11.1   0.0    1.6  1  Shal-type       Shal-type voltage-gated potassium channels, N


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.0   1.2e-39   2.1e-36       2     190 ..       3     180 ..       2     184 .. 0.93

  Alignments for each domain:
  == domain 1  score: 125.2 bits;  conditional E-value: 1.2e-39
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 +vl+tGassGIG  +ak +a++G  v++++r +++l +++++l     ++ +  +D+tdr+++++++  + +     d+++ +AG  +  +  +++++ 
  CTQ26202.1   3 TVLITGASSGIGAGLAKSFAADGHLVIACGRDASRL-AALQQLS---PNISVRLFDMTDRDACRQALTGCFA-----DLIILCAGTCEYLDHGQVDAAL 92 
                 79********************************99.4455555...459********************55.....88999****9999999999999 PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 +erv+++N+ g++++ +a+ +++    + r+v vsS+a   p++   aY+AsKaa++ +++sl+ +++p+g+ v++v PG+vdT+++++ 
  CTQ26202.1  93 VERVMATNFLGPVNCLAALQTQLE--AGDRVVLVSSMAHWLPFPRAEAYGASKAALTWFANSLRLDWEPKGVAVTVVSPGFVDTPLTRKN 180
                 ******************999977..7779********************************************************9875 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   2.6e-25   4.6e-22       1     182 [.       8     180 ..       8     200 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 2.6e-25
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   Ga sgIG+++Ak++a+ G  v+++ ++ ++ +++++l  +   +v   D td+++++++   + +     D ++ +ag ++    +  +++ + ++r
    CTQ26202.1   8 GASSGIGAGLAKSFAADGHLVIACGRDASRLAALQQLSPN--ISVRLFDMTDRDACRQALTGCFA-----DLIILCAGTCEY--LDHGQVDAALVER 95 
                   899***********************99996666666553..347889***********999886.....7899********..777899******* PP

                   HHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGS CS
  adh_short_C2  98 aldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgi 182
                   ++++n+ + ++++ a++  +++g ++v +ss++    +p  +ayga+Kaal  ++ +l  ++ pkg+ v +vspg+++T+++++ 
    CTQ26202.1  96 VMATNFLGPVNCLAALQTQLEAGDRVVLVSSMAHWLPFPRAEAYGASKAALTWFANSLRLDWEPKGVAVTVVSPGFVDTPLTRKN 180
                   ********************************************************************************99875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.1   3.3e-14   5.9e-11       2     165 ..       3     155 ..       2     172 .. 0.91

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 3.3e-14
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 t+litG+  g+G  la+  a++g   ++ ++R+       ++++a+l++l  +++v+  D +d+da +++l+ + a+      +i +Ag+ +     ++
  CTQ26202.1   3 TVLITGASSGIGAGLAKSFAADGH-LVIACGRD-------ASRLAALQQLSPNISVRLFDMTDRDACRQALTGCFADL-----IILCAGTCEYLDHGQV 88 
                 78********************96.46678999.......458999****************************9988.....**************** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs 165
                 +a+ +e+v+a  + G  n   +l+   e  d +vl+SS+a  l  +   +Y a  a l  +a++ r 
  CTQ26202.1  89 DAALVERVMATNFLGPVNCLAALQTqlEAGDRVVLVSSMAHWLPFPRAEAYGASKAALTWFANSLRL 155
                 ***************999888888778999**************************99999988765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   1.5e-12   2.6e-09       1     161 [.       4     158 ..       4     179 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1.5e-12
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHH....HHHSHHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl....elveldltdrsalerlfkeeqpdavihlAavggvaa....ssedpadfiekn 91 
                 +l+tGa+  iG+ l+k +++ g+ vi+  r+  as+ a+l++l    ++   d+tdr+a+++++    +d +i++A+ + + +     +   ++++ +n
  CTQ26202.1   4 VLITGASSGIGAGLAKSFAADGHLVIACGRD--ASRLAALQQLspniSVRLFDMTDRDACRQALTGCFADLIILCAGTCEYLDhgqvDAALVERVMATN 100
                 79*****************************..667777777788999999*************************976554400004445567788** PP

                 THHHHHHHHHHHHH..TCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT CS
   Epimerase  92 lqgtlnlleaarka..gvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyg 161
                 + g +n l a++++    +r++ +sS      +a+      +   p++  ++Y+a+K+a  + + +++ + +
  CTQ26202.1 101 FLGPVNCLAALQTQleAGDRVVLVSS------MAH-----WL---PFPRAEAYGASKAALTWFANSLRLDWE 158
                 ***********98875555*******......334.....67...99999************9999887765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   4.4e-12   7.8e-09       1     153 [.       8     179 ..       8     198 .. 0.73

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 4.4e-12
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT.TTCEEEE--TT-CCHHHHHHTT-..SEEEES---TCCHHHH............... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleae.eglevvegdvtdvedlaealkga..daVvsalggggkdeeg............... 77 
                     GA+ ++G  l+k  +a+g h v a  R++++la+l++  ++++v   d+td ++ ++al+g+  d ++ ++g+ +  ++g               
      CTQ26202.1   8 GASSGIGAGLAKSFAADG-HLVIACGRDASRLAALQQLsPNISVRLFDMTDRDACRQALTGCfaDLIILCAGTCEYLDHGqvdaalvervmatnf 101
                     9****************5.**************9985569*********************9667788888665553333344455677788889 PP

                     ..HHHHHHHHHH..CT--EEEEEEETTTTSGCGCHHHHHHH.HCCHHHHHHHHHHHHH.HHHSSSEEEEEEE-CEE-ST--S CS
  NAD_binding_10  78 ..aknivdaake..agvkRfvlvsaigvgdevpgefgewnk.ellkaylaakraaeel.lrasgldwTivrpggLtdepttk 153
                        +n+++a+++  +   R+vlvs++        +f++     + ka+l + + + +l  + +g+  T+v+pg+     t k
      CTQ26202.1 102 lgPVNCLAALQTqlEAGDRVVLVSSMAHW----LPFPRAEAyGASKAALTWFANSLRLdWEPKGVAVTVVSPGFVDTPLTRK 179
                     998888888876345689*******9743....3444432212445666666666665345588888999998875554544 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   3.8e-07   0.00068       1      60 [.       2      78 ..       2     126 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.8e-07
                   EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.................T--TTSHHHHHHHHHHH--SEEEE--- CS
  RmlD_sub_bind  1 mkilvtGanGqlGseLakqlaeeglevlaltre.................eldltdaeavaellkeakpdvvvnaAA 60
                   m++l+tGa+  +G  Lak++a++g+ v+a++r+                  +d+td++a +++l     d+++ +A 
     CTQ26202.1  2 MTVLITGASSGIGAGLAKSFAADGHLVIACGRDasrlaalqqlspnisvrLFDMTDRDACRQALTGCFADLIILCAG 78
                   89******************************999************99999********************99995 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.2e-06    0.0075      10      62 ..      13      64 ..       5      82 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.2e-06
                   HHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC...-EEECECHHHHHHH- CS
  F420_oxidored 10 mgealasgllaagaqpheivvansrnpekaeelaeelg...vkvtavdneeaaeea 62
                   +g++la+ ++a g   h ++ a+ r+ +++++l++      v+++ ++  +a+++a
     CTQ26202.1 13 IGAGLAKSFAADG---HLVI-ACGRDASRLAALQQLSPnisVRLFDMTDRDACRQA 64
                   89***********...7777.*********99975433444899999999998853 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.2e-05     0.021       1     129 [.       5     126 ..       5     166 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S-....--HHHHT CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAq....shVdvsf 92 
                    LiTG +  iG+ la+ + + g+ v+   r++s     r+++l++     l++n+++   D+tD+++ +++l  +  d ++  A+      h +v  
     CTQ26202.1   5 LITGASSGIGAGLAKSFAADGHLVIACGRDAS-----RLAALQQ-----LSPNISVRLFDMTDRDACRQALTGCFADLIILCAGTceylDHGQVDA 90 
                    8*********************9988766555.....4556643.....4679999************************9998744445777888 PP

                    TSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEE CS
  GDP_Man_Dehyd  93 ekPeytaevnvlGtlrLLeairalglekkvrfyqaSt 129
                       e+++ +n+lG ++ L a ++ +le   r++ +S+
     CTQ26202.1  91 ALVERVMATNFLGPVNCLAALQT-QLEAGDRVVLVSS 126
                    88899***************987.5778889988887 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.1e-05      0.13       1      72 [.       4      77 ..       4      97 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.1e-05
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEE.ES-TT-HHHHHHHHTT..-SEEEE-- CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelv.kgdlddkeslvealkg..vdvvfsvt 72
                +l++Ga+  +G+ +++ ++++gh v a  Rd ++ +a + + +++  v   d+ d++  ++al g  +d++++  
  CTQ26202.1  4 VLITGASSGIGAGLAKSFAADGHLVIACGRDASRLAALQ-QLSPNISVrLFDMTDRDACRQALTGcfADLIILCA 77
                79*****************************96654433.44677777788999999999999984456666554 PP

>> Shal-type  Shal-type voltage-gated potassium channels, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.22       2      16 ..     126     140 ..     125     140 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
   Shal-type   2 svAaWLPFaRAAAIG 16 
                 s A WLPF RA A G
  CTQ26202.1 126 SMAHWLPFPRAEAYG 140
                 7899*******8855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1741.44
//
Query:       CTQ26203.1  [L=144]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-17   63.9   0.0    2.2e-17   63.6   0.0    1.1  1  SnoaL_2   SnoaL-like domain
    5.1e-07   30.3   0.0    6.7e-07   29.9   0.0    1.2  1  NTF2      Nuclear transport factor 2 (NTF2) domain
    4.4e-05   23.3   0.0    6.6e-05   22.7   0.0    1.2  1  SnoaL     SnoaL-like polyketide cyclase
     0.0017   18.5   0.0     0.0023   18.1   0.0    1.2  1  SnoaL_4   SnoaL-like domain
  ------ inclusion threshold ------
      0.043   14.2   0.0      0.061   13.7   0.0    1.3  1  DUF4440   Domain of unknown function (DUF4440)
        0.1   12.7   0.0       0.12   12.4   0.0    1.2  1  LEH       Limonene-1,2-epoxide hydrolase catalytic domain


Domain annotation for each model (and alignments):
>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   7.4e-21   2.2e-17       3      99 ..      13     111 ..      11     114 .. 0.94

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 7.4e-21
                 HHHHHHHTTCHHHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTEEEEEEEEEEE..EETTSSEEEEEEEEEEEEETTEE CS
     SnoaL_2   3 aflaalnagdldalaalfapdvvwedpggelrGreairaffralfaafpdlrfeihdvvadgdrvavewtvtgt..ipatgrgvtvrgvdvfrvrdGki 99 
                 +++a l+a+ ++ala l++pd+++ dp+g+++G  ai+++f++l+a+++++rf+i+  ++dg+r av wt++    + a g+++ ++g++v ++++ ++
  CTQ26203.1  13 EYYAGLDAQPPAALATLYHPDATLSDPFGQHQGLFAIQRYFTHLLANVEQCRFTIDTPLCDGQRFAVTWTMHWShpRIAGGETLALPGCSVVDIAGEQV 111
                 79*******************************************************************99998778888888888*******999886 PP

>> NTF2  Nuclear transport factor 2 (NTF2) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   2.2e-10   6.7e-07       8      66 ..      13      71 ..       7      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 2.2e-10
                HHHHHHHHHGGGGGGGGEEEEEEEEEETTEEEEESHHHHHHHHHHSSCSC..EEEEEEEEE CS
        NTF2  8 qYYaaldagdregllalyaadaslltpegsspvkgreaIteffrslpftr..ielkittvd 66
                +YYa lda+ + +l+ ly+ da+l++p g+   +g  aI++ f++l ++   ++++i+t  
  CTQ26203.1 13 EYYAGLDAQPPAALATLYHPDATLSDPFGQ--HQGLFAIQRYFTHLLANVeqCRFTIDTPL 71
                5*****************************..****************9998899998854 PP

>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.2e-08   6.6e-05       7     119 ..      14     120 ..       6     124 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.2e-08
                 HHHHHHTT-HHHHHGTEEEEEEETCCTTTCECHHHHHHHHHHHHHHHCTTCEEEEEEEEEETTEEEEEEEEEEEESSEBTTBE-TT-EEEEEEEEEEEE CS
       SnoaL   7 yeevwnsgdldaldelvaedvvdhnpeeeparGlegfrafveelfkafPDlkvevedlvaegdkvaarltftGthtgeflGipptGkkvkfeeitllrv 105
                 y + ++ + ++al++l+++d    +p  ++++Gl ++ + ++ l++ +   +++++  +++g + a+ +t+  +h        + G ++++ ++ ++ +
  CTQ26203.1  14 YYAGLDAQPPAALATLYHPDATLSDP-FGQHQGLFAIQRYFTHLLANVEQCRFTIDTPLCDGQRFAVTWTMHWSHPRI-----AGGETLALPGCSVVDI 106
                 3334499999***********99955.5*******************************************8888444.....4799999999999999 PP

                 ETTEEEEEEEEECH CS
       SnoaL 106 edGkIveewdviDl 119
                 + +++ +++d++D 
  CTQ26203.1 107 AGEQVLHQRDYYDA 120
                 99999999999995 PP

>> SnoaL_4  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.6e-07    0.0023      15     103 ..      13      96 ..       6     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.6e-07
                 HHHHHHHTT-HHHHHTTEEEEEEEEETTS..--EESHHHHHHHHHSHHHHHH-EEEEE---EEEEETTEEEEEEEEEEEEEETTEEEEE CS
     SnoaL_4  15 rygyylDtkdweeladlFtedavvdytgvgegvlegrdairaalrealdgfaltqHllsnplieldgdtAtgrayllatlvrdgdggrq 103
                  y   lD++ +++la+l+++da++  + +  g+++g  ai++++ + l++  +++  +++pl   dg++  +++ +   + r ++g++ 
  CTQ26203.1  13 EYYAGLDAQPPAALATLYHPDATLSDP-F--GQHQGLFAIQRYFTHLLANVEQCRFTIDTPLC--DGQRFAVTWTMHWSHPRIAGGETL 96 
                 688899*****************9888.6..****************9888888888888885..799999999998888777766654 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     2e-05     0.061       8      84 ..      14      91 ..       6     103 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2e-05
                HHHHHHCT-HHHHHHCEEEEEEEE-TTS-EEEHHHHHHHHHCCHCEEEEEEEEEEEEEEETTEEEEEEEEEEEECC.T CS
     DUF4440  8 leeafvagdaealaallapdavlvgpsgtvldkeellealeagfaagrslelteeevrvlgdlAvvtgrytfegrg.d 84
                +++ + a  ++ala l++pda+l  p+g+ ++  ++   +++  a+ ++ ++t+ +    g+  +vt++ ++++++ +
  CTQ26203.1 14 YYAGLDAQPPAALATLYHPDATLSDPFGQHQGLFAIQRYFTHLLANVEQCRFTIDTPLCDGQRFAVTWTMHWSHPRiA 91
                33444555567*****************98887776666666666666667777776677777777777777776543 PP

>> LEH  Limonene-1,2-epoxide hydrolase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.1e-05      0.12      22     120 ..      25     124 ..       3     128 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.1e-05
                 HHHHEEEEE.EEEETTTEEEE-HHHHHHHHHTT.TTT-EEEEEEEEEEEETTE..EEEEEEEEEEE..TTEEEEEEEEEEEEEETTEEEEEEEE--HHH CS
         LEH  22 avrrlatdlevyeneglstihGraeaiallerlsadilavevkilriaadgsa..VltERlDrliladGplivqltvmGvfeVedgrivlWRdYfDvnd 118
                 a ++l +++  +   ++++ +G       + +l a++ +  + i     dg++  V       + +  G + ++l+ + v ++ ++++   RdY+D+ +
  CTQ26203.1  25 ALATLYHPD-ATLSDPFGQHQGLFAIQRYFTHLLANVEQCRFTIDTPLCDGQRfaVTWTMHWSHPRIAGGETLALPGCSVVDIAGEQVLHQRDYYDAGE 122
                 455555555.566677777777777777777777777777888888778887622322333344555788**************************988 PP

                 HH CS
         LEH 119 ll 120
                 + 
  CTQ26203.1 123 MI 124
                 75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1095.58
//
Query:       CTQ26204.1  [L=59]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 469.61
//
Query:       CTQ26205.1  [L=242]
Description: HTH-type transcriptional regulator MlrA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-18   66.3   0.0    4.2e-18   65.2   0.0    1.6  1  MerR_1       MerR HTH family regulatory protein
    1.6e-13   50.2   0.4    3.9e-13   48.9   0.1    1.9  2  MerR         MerR family regulatory protein
    0.00058   20.0   0.0     0.0022   18.1   0.0    2.1  1  HTH_17       Helix-turn-helix domain
     0.0056   16.8   4.5      0.024   14.7   0.1    3.6  5  HTH_28       Helix-turn-helix domain
  ------ inclusion threshold ------
      0.022   14.6   0.0       0.19   11.6   0.0    2.4  2  HTH_23       Homeodomain-like domain
      0.059   13.3   0.0       0.11   12.4   0.0    1.4  1  Terminase_5  Putative ATPase subunit of terminase (gpP-like)


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   1.4e-21   4.2e-18       1      67 [.       3      70 ..       3      71 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 1.4e-21
                EEHHHHHHHHTS-HHHHHHHHHHTT.-S-EE-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XXX CS
      MerR_1  1 ysigevakilgvtthtlrywekegl.lkpkrteggrryYtdedierLklikyLlkrGltlkgikklln 67
                ysige+a+++g+++ tlr w++++  lkp rt+gg+r+Y+d+d+++  +i  + k+G++++++k ll+
  CTQ26205.1  3 YSIGEFARLCGINATTLRAWQRRYGlLKPLRTDGGHRLYSDDDVQQALKILDWVKKGVPVSQVKPLLS 70
                9***********************99**************************************9886 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.1   1.3e-16   3.9e-13       1      38 []       4      41 ..       4      41 .. 0.98
   2 ?   -3.1   0.0       2.4   7.2e+03      29      37 ..     183     191 ..     181     191 .. 0.81

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.3e-16
                EHHHHHHHHTTTHHHHHHHHHT.TSSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEre.GLipppeRtegGyRlY 38
                +Ige+A+l+G+ + tLR + r+ GL+ +p Rt+gG+RlY
  CTQ26205.1  4 SIGEFARLCGINATTLRAWQRRyGLL-KPLRTDGGHRLY 41
                7*********************88**.***********9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.4
                 EETTTSSEE CS
        MerR  29 eRtegGyRl 37 
                  Rt  G+R+
  CTQ26205.1 183 KRTGQGHRI 191
                 599999995 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.4e-07    0.0022       2      45 ..       3      48 ..       2      51 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.4e-07
      HTH_17  2 ltveEaAelLgvsrstvyrli.rrgelpaak.iGrrwriprsdlee 45
                +++ E+A+l g+  +t++ +  r g l++++  G++++++ +d+++
  CTQ26205.1  3 YSIGEFARLCGINATTLRAWQrRYGLLKPLRtDGGHRLYSDDDVQQ 48
                89****************7651667*****99*******9999876 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   8.1e-06     0.024      14      36 ..       4      26 ..       3      31 .. 0.94
   2 ?    0.7   0.0       0.2   6.1e+02       3      17 ..      50      64 ..      50      70 .. 0.90
   3 ?   -0.7   0.0      0.52   1.6e+03      33      46 ..      88     101 ..      86     108 .. 0.82
   4 ?   -2.1   0.0       1.4   4.3e+03       4      19 ..     118     135 ..     118     140 .. 0.75
   5 ?   -4.1   0.3         6   1.8e+04      27      34 ..     225     232 ..     224     233 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.1e-06
      HTH_28 14 svreaArelgisrrtvyrWikry 36
                s+ e Ar+ gi+ +t++ W +ry
  CTQ26205.1  4 SIGEFARLCGINATTLRAWQRRY 26
                7899******************9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.2
      HTH_28  3 leiikllaaGhsvre 17
                l+i+ ++++G++v++
  CTQ26205.1 50 LKILDWVKKGVPVSQ 64
                799********9987 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.52
      HTH_28  33 ikryeegGiagLvp 46 
                 ++r+ eg i++L++
  CTQ26205.1  88 LQRLKEGKIESLRQ 101
                 68999999999976 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.4
      HTH_28   4 eiikllaaGh..svreaA 19 
                 e++++l +++  +v++++
  CTQ26205.1 118 EVLRPLRSQVsaNVPAIM 135
                 689999999966777666 PP

  == domain 5  score: -4.1 bits;  conditional E-value: 6
      HTH_28  27 rtvyrWik 34 
                 r+v  W +
  CTQ26205.1 225 RQVELWQQ 232
                 89999987 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.3e-05      0.19      19      41 ..       4      26 ..       3      37 .. 0.88
   2 ?   -0.6   0.0      0.41   1.2e+03       4      23 ..      46      65 ..      43      66 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.3e-05
      HTH_23 19 svreIAreLgvsrrTvyrwlkry 41
                s+ e Ar++g++  T++ w +ry
  CTQ26205.1  4 SIGEFARLCGINATTLRAWQRRY 26
                67788*****************9 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.41
      HTH_23  4 ereRlrillllaeGlsvreI 23
                +++ l+il  +++G +v+++
  CTQ26205.1 46 VQQALKILDWVKKGVPVSQV 65
                56668899999999999986 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.7e-05      0.11      14      38 ..       3      27 ..       1      34 [. 0.94

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.7e-05
  Terminase_5 14 yrvaeIAeelglkeatVysWkkrde 38
                 y++ e A+ +g++  t  +W +r++
   CTQ26205.1  3 YSIGEFARLCGINATTLRAWQRRYG 27
                 9999********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1919.90
//
Query:       CTQ26206.1  [L=177]
Description: outer membrane lipoprotein (lipocalin) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-45  152.6   0.1    7.6e-45  152.4   0.1    1.0  1  Lipocalin_2  Lipocalin-like domain
      5e-06   26.8   0.0    6.7e-06   26.4   0.0    1.1  1  Lipocalin    Lipocalin / cytosolic fatty-acid binding protein


Domain annotation for each model (and alignments):
>> Lipocalin_2  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.4   0.1   8.5e-49   7.6e-45       2     146 .]      35     174 ..      34     174 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.4 bits;  conditional E-value: 8.5e-49
  Lipocalin_2   2 dlerYlGkWyeiArlpmrfergcvdvtaeYtlrddgtiaVenrcre.vegklkeiegkAkvedeaseaklkVsFlkeflrievvkgdYwvleldddys 98 
                  d++rYlGkWye+Arl +rferg ++vta+Y  r dg i+V nr ++ v+++++e +gkA++    ++a lkVsF++      +++g Y+v++ldddy+
   CTQ26206.1  35 DASRYLGKWYEVARLENRFERGLEQVTATYGARSDGGISVVNRGYDlVKKRWNESDGKAYFTGAPTTAALKVSFFG------PFYGGYNVIRLDDDYQ 126
                  99********************************************9999**************************......9*************** PP

  Lipocalin_2  99 lalvgspsrkylwilsRtpqlseeqlekllekareqGydvskLirvaq 146
                  +alv+ p+r+ylwilsRtp+++++ ++ +l++are G+dv++L +++q
   CTQ26206.1 127 YALVSGPNRDYLWILSRTPTIPAAVKQDYLNTARELGFDVDRLVWIRQ 174
                  ********************************************9876 PP

>> Lipocalin  Lipocalin / cytosolic fatty-acid binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   7.4e-10   6.7e-06       2     139 ..      41     171 ..      40     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 7.4e-10
                 EEEEEEEEEESSGGHHSTTHTTTEEEEEEEEETTTEEEEEEEEEETTE.....EEEEEEEEEEESSTTEEEEEEEE.STTEEEEEEEEEESSSEEEEEE CS
   Lipocalin   2 GkWyliasandnsefeeeekklrvyiaeikpteegnlevteiekdggk.....ceeesitakkteepgklgvefde.yldgrkvkvlttdydnylilyl 94 
                 GkWy++a        + +e+ l  ++a++ +  +g ++v+++  d  k       +++  ++   + + l+v f + + +g +v  l+ dy  y+++  
  CTQ26206.1  41 GKWYEVARLE-----NRFERGLEQVTATYGARSDGGISVVNRGYDLVKkrwneSDGKA-YFTGAPTTAALKVSFFGpFYGGYNVIRLDDDY-QYALVSG 132
                 *********5.....9**************88***********544433424244444.55556777889999999*99999999999999.8888877 PP

                 EEEETTEEEEEEEEEESSSSEEHHHHHHHHHHHHHTTETGGGEEE CS
   Lipocalin  95 kkekegkttlvaellsrdpelspelleefkkflkelgideenivr 139
                  +        ++++lsr+p++   ++++  + ++elg+d +++v 
  CTQ26206.1 133 PNR------DYLWILSRTPTIPAAVKQDYLNTARELGFDVDRLVW 171
                 776......9*****************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1496.72
//
Query:       CTQ26207.1  [L=115]
Description: putative membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-23   82.6   0.9    2.2e-23   82.3   0.0    1.6  2  DUF1294   Protein of unknown function (DUF1294)
     0.0028   17.6   0.2     0.0086   16.0   0.2    1.9  1  DUF3311   Protein of unknown function (DUF3311)
  ------ inclusion threshold ------
        0.2   11.4   2.0       0.63    9.8   0.0    2.3  2  DUF3094   Protein of unknown function (DUF3094)


Domain annotation for each model (and alignments):
>> DUF1294  Protein of unknown function (DUF1294)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2         2   1.2e+04      27      34 ..      10      17 ..       9      20 .. 0.67
   2 !   82.3   0.0   3.6e-27   2.2e-23       1      55 []      33      87 ..      33      87 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2
     DUF1294 27 Llllallg 34
                Llll+++g
  CTQ26207.1 10 LLLLTAVG 17
                77777776 PP

  == domain 2  score: 82.3 bits;  conditional E-value: 3.6e-27
     DUF1294  1 nlitfllygiDKrkAkkkkwRipEktLlllallgGslGallgmrlfrHKtkkksF 55
                +l+t+l+yg+DK +A+k ++R+pE tLl+l l+gG++Ga+lg+++frHKt+k++F
  CTQ26207.1 33 SLLTWLIYGADKLAARKAWRRVPETTLLVLGLAGGWPGAILGQQCFRHKTQKQPF 87
                799**************************************************99 PP

>> DUF3311  Protein of unknown function (DUF3311)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   1.4e-06    0.0086      35      57 ..      26      48 ..      21      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.4e-06
     DUF3311 35 llwvllasvvtwlayrlakreda 57
                ++w+ll+s++twl+y  +k +++
  CTQ26207.1 26 AMWFLLSSLLTWLIYGADKLAAR 48
                79*************98887766 PP

>> DUF3094  Protein of unknown function (DUF3094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.7     0.095   5.7e+02      27      40 ..      24      37 ..      22      40 .. 0.76
   2 ?    9.8   0.0   0.00011      0.63      20      46 ..      79     105 ..      76     115 .] 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.095
     DUF3094 27 PFrpWlllvvvlav 40
                P   W+ll+ +l+ 
  CTQ26207.1 24 PLAMWFLLSSLLTW 37
                77889999988865 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00011
     DUF3094  20 qHqvERqPFrpWlllvvvlavvigLGl 46 
                  H+  +qPFr  ++++v l v    Gl
  CTQ26207.1  79 RHKTQKQPFRTRFFISVALNVAALAGL 105
                 59999**************99887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1012.36
//
Query:       CTQ26208.1  [L=1049]
Description: copper/silver efflux system, membrane component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.8e-235  781.8   1.2   1.1e-234  781.5   1.2    1.0  1  ACR_tran  AcrB/AcrD/AcrF family
    4.1e-05   22.7   5.2     0.0032   16.4   0.8    2.8  2  MMPL      MMPL family


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  781.5   1.2  1.2e-238  1.1e-234       2    1019 ..       6    1037 ..       2    1039 .. 0.98

  Alignments for each domain:
  == domain 1  score: 781.5 bits;  conditional E-value: 1.2e-238
                  HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS- CS
    ACR_tran    2 ikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtd 98  
                  i+ +++ + +++++al + ++G+  i+++PvdalP+++ ++v v+t ypG +p++ve++vt pl   +  ++g k+v+  S+ g s + + Fedgtd
  CTQ26208.1    6 IRRSVANRFLVMMAALFLSIWGTWTIIHTPVDALPDLSDVQVIVKTRYPGQAPQIVENQVTWPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTD 102 
                  567888999**************************************************************************************** PP

                  HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHHHC CS
    ACR_tran   99 idiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqklak 195 
                  ++ Ar  v + l++++ kLP +v   ++ ++ t+ + ++++a++  +g+ +  elr l+++ +k +L+ ++ V++v  +Gg  k+++i++dp+kl +
  CTQ26208.1  103 PYWARSRVLEYLNQVQGKLPAGV-SAEMGPDATGVGWVFEYALVDRSGKHDLAELRSLQDWFLKYELKTIPNVSEVASVGGVVKEYQIVVDPMKLTQ 198 
                  ***********************.99*********************************************************************** PP

                  TT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEE.ETTSCEEEHHHCEEEEEEESSSSSEEEETT.EEEEEEEEEEETTS CS
    ACR_tran  196 lgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivk.nqdgskvrlrDvAkVelgaeeerlaatfng.kpavllevkklpga 290 
                  +g++l +v sal + n+++++ ++e  e e+ +ra+g lq+ +d+++i++k   +g +v+l+Dv +V++g e +r++a++ng  +++++ v  ++g+
  CTQ26208.1  199 YGISLGEVKSALDASNQEAGGSSVELAEAEYMVRASGYLQTLDDFKNIVLKtGDNGVPVYLGDVVRVQIGPEMRRGIAELNGeGEVAGGVVILRSGK 295 
                  ***************************************************99*****************************66888889999**** PP

                  BHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHH CS
    ACR_tran  291 naievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNllt 387 
                  na+ev+ avkekl++L+ slPeg+e+v++ydr+++++ +i++ + +Lle  ++v+lv  lFL  +r++l+  i++Pl l ++f+++++ g+ +N ++
  CTQ26208.1  296 NAREVISAVKEKLASLQSSLPEGMEVVTTYDRSQLIDRAIDNLSYKLLEEFIVVALVCALFLWHVRSALVAIISLPLGLCFAFIMMHFQGLNANIMS 392 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHH.HTS-H.........HHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  388 LfgLvlAiGlvvDdAiVvvEnierklee.egekp.........leaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaills 474 
                  L+g+++A+G +vD AiV++En +++lee e+++p          + + +++ e++ al  + l+++  f+Pi++l+G eGklf ++a+t   +++ +
  CTQ26208.1  393 LGGIAIAVGAMVDAAIVMIENAHKRLEEwEHQHPgeklsndirWKIITEASVEVGPALFISLLIITLSFIPIFTLEGQEGKLFGPLAFTKTWSMAGA 489 
                  ****************************999999********9999*************************************************** PP

                  HHHHHCCHHHHHHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB CS
    ACR_tran  475 vlvaltltPalcallLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgv 571 
                  +l+a++ +P l +  ++ r   ++      +n l ++l r Y++ll kvl+ ++ +ll+al+ ++  ++ + r++ eflP+++eg+l+ +  + pg+
  CTQ26208.1  490 ALLAIVAIPILMGFWIRGRIPAES------SNPLNRFLIRIYHPLLLKVLHWPKTTLLIALLSILTVAWPLNRVGGEFLPQINEGDLLYMPSTLPGI 580 
                  ********************9886......8****************************************************************** PP

                  -HHHHHHHHHHHHHHHHTTTTEEEEEEEECECS.SE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSSS CS
    ACR_tran  572 sleqtqkvlkqvekilkekpevesvfavtGfae.sgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletls 667 
                  s +q++++l++ +k + + pev++vf +tG ae ++d a+  + +++i+Lkp++++  +  + e+++e+l k ++ +pg +   ++pi  r++  ++
  CTQ26208.1  581 SAAQAADMLQKTDKLIMAVPEVARVFGKTGKAEtATDSAPLEMVETTIQLKPQDQW-RPGMTMEKIVEELDKTVR-LPGLANLWVPPIRNRIDMLST 675 
                  *********************************9999*******************.9999*********99885.88888899************* PP

                  CEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE CS
    ACR_tran  668 gvrselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvrl 764 
                  g +s +  k+ g++l  ++++a q+  +++++p++++   e   + ++l+++i rekaar+G+++ d++ ++++a+gg++v++ +e+ +r+ +++r 
  CTQ26208.1  676 GIKSPIGIKVSGTNLADIDAIAGQIEVVARTVPGVTSALAERLVGGRYLNIDIHREKAARYGMTVGDVQLFVSSAIGGAMVGETVEGVERYPINIRY 772 
                  ************************************************************************************************* PP

                  -GGGSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHHHH CS
    ACR_tran  765 eedlrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqeqeas 861 
                  ++ +r spe l++l++ ++  + + l++va+++  +gp+ ++ en ++++ i  +++++d+ s + + +++i k+vkl +g++++++gq+e  ++a+
  CTQ26208.1  773 PQSYRDSPETLRQLPILTPLKQQIVLGDVAEVKVVTGPSMLKTENARPTSWIYIDARDRDMVSVVHDLQQAIGKEVKLKPGISVSYSGQFELLERAN 869 
                  ************************************************************************************************* PP

                  CHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT......... CS
    ACR_tran  862 nsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegk......... 949 
                  ++l ++v+++l+++f++L + +  + e+lli+++vP+alvG++  l+ +g +lsv++  G+i+l G+a+  +++++ + +++ e e +         
  CTQ26208.1  870 QKLKLMVPMTLMIIFVLLYLAFRRVGEALLIITSVPFALVGGIWFLYWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAEPSlenpqtfsv 966 
                  *****************************************************************************99988776532222222222 PP

                  .CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  950 .sleeaileaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvl 1019
                   +l+ea +++a  R+rP  MT  ++i G+lP++ +tgaGse+ + ++  ++gG++t+ +L+L+++P+ Y l
  CTQ26208.1  967 dKLDEALYQGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKL 1037
                  3689***************************************************************9987 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.2    0.0002       1.8     255     292 ..     373     410 ..     295     490 .. 0.89
   2 !   16.4   0.8   3.6e-07    0.0032     120     220 ..     851     942 ..     825     960 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0002
        MMPL 255 GltvaiamlgLvvarlpvlaqvGvaialGvlvdvlivl 292
                 Gl++a+ m+ +  ++ ++++  G+aia+G +vd++iv+
  CTQ26208.1 373 GLCFAFIMMHFQGLNANIMSLGGIAIAVGAMVDAAIVM 410
                 78888888888888888888888888888888888775 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 3.6e-07
        MMPL 120 leglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDY 218
                   g+ v+ +G+  +l+     ++++lkl++ +tl++i+v+L +++r +  all++ +v + l+  + +     +  g+ ls  ++g  ++ l +v++ +
  CTQ26208.1 851 KPGISVSYSGQFELLER----ANQKLKLMVPMTLMIIFVLLYLAFRRVGEALLIITSVPFALVGGIWF----LYWMGFHLSV-ATGTGFIALAGVAAEF 940
                 45666666665555554....8899*********************************9887644333....2222333322.2334455555555555 PP

        MMPL 219 al 220
                  +
  CTQ26208.1 941 GV 942
                 55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1049 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.42
# Mc/sec: 7549.50
//
Query:       CTQ26209.1  [L=420]
Description: copper/silver efflux system, membrane fusion protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-59  200.9   0.0    2.1e-59  200.3   0.0    1.3  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    1.2e-27   95.5   1.7    1.2e-26   92.3   0.2    2.4  2  HlyD_D4          Long alpha hairpin domain of cation efflux s
    1.7e-12   48.0   0.2    1.2e-09   38.9   0.1    2.7  2  HlyD_3           HlyD family secretion protein
    0.00041   20.2   0.8    0.00049   19.9   0.8    1.6  1  HlyD             HlyD membrane-fusion protein of T1SS
  ------ inclusion threshold ------
      0.033   14.0   0.1        6.8    6.6   0.0    2.8  2  Biotin_lipoyl_2  Biotin-lipoyl like
      0.067   13.0   0.0          4    7.3   0.0    2.5  2  Biotin_lipoyl    Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.3   0.0   7.1e-63   2.1e-59       6     214 .]     115     320 ..     110     320 .. 0.98

  Alignments for each domain:
  == domain 1  score: 200.3 bits;  conditional E-value: 7.1e-63
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23   6 lravGtvayderrlarvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalkakkklkkkelleaarerLrllgvseeqiaelektgk 104
                  + +++++++e +++ ++ar++G+++k+y  ++gdkVk+G+pL+el+ p++v+aq+eyll ++++ +++   ++e   erLrl g+++++i++l+ t+k
  CTQ26209.1 115 QTFPANISFNEYQYVIMQARAAGFINKVYPLTVGDKVKQGTPLLELTIPDWVEAQSEYLLLQETGGTAT---QVEGILERLRLAGMPDDDIRRLKTTRK 210
                 57899**********************************************************999994...79************************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 105 vqktvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyptvdpetRtvkvRieldN 203
                 +q+++t+kapi+Gv+t+ ++r G+ + +++++++i+ ++ VWv ++v+e+ + l+k  ++  ++v+a pgktf+ +   i+p+vd++tRt+++R++++N
  CTQ26209.1 211 IQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVSVAVPESIAWLIKDASQFAIQVPAWPGKTFRINKWTILPSVDSATRTLQLRLQVNN 309
                 *************************************************************************************************** PP

                 XXXXXXXXXXX CS
    HlyD_D23 204 pdgkLkpgmfA 214
                 pd++Lkpgm A
  CTQ26209.1 310 PDEALKPGMNA 320
                 *********87 PP

>> HlyD_D4  Long alpha hairpin domain of cation efflux system protein, CusB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.2   4.1e-30   1.2e-26       1      56 []     157     212 ..     157     212 .. 0.98
   2 ?    2.0   0.1     0.065   1.9e+02      24      37 ..     393     406 ..     390     419 .. 0.82

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 4.1e-30
                 EEEEE-TTHHHHHHHHHHHHHTT--HHHHHHHHHHHHHCT--HHHHHHHHHHTS.. CS
     HlyD_D4   1 LadLliPeWvaaQeEYLalkelgdlaslldaareRlrLaGMpdadIrrleasgKir 56 
                 L++L+iP+Wv+aQ+EYL+l+e+g++a+++++++eRlrLaGMpd dIrrl+ ++Ki+
  CTQ26209.1 157 LLELTIPDWVEAQSEYLLLQETGGTATQVEGILERLRLAGMPDDDIRRLKTTRKIQ 212
                 89****************************************************97 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.065
                 --HHHHHHHHHHHH CS
     HlyD_D4  24 dlaslldaareRlr 37 
                 d+ +++ +a+eR+r
  CTQ26209.1 393 DSEANIAGALERMR 406
                 7889999******9 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0049        15       3      34 ..     132     164 ..     130     180 .. 0.86
   2 !   38.9   0.1   3.9e-13   1.2e-09       1     106 []     216     317 ..     216     317 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0049
      HlyD_3   3 rApvdGvvvelnv.eegevvqagdelleiippd 34 
                 +A  +G ++++   ++g+ v +g++lle++ pd
  CTQ26209.1 132 QARAAGFINKVYPlTVGDKVKQGTPLLELTIPD 164
                 68899*****9877**************98666 PP

  == domain 2  score: 38.9 bits;  conditional E-value: 3.9e-13
      HlyD_3   1 tlrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktgaykvevslenpekk 99 
                 tl+Ap+dGv+++ ++++g  +++  ++++i   d ++v ++vp+  + +ik   ++  +++   +++t + +   i p+vd+ t++++++++++np   
  CTQ26209.1 216 TLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVSVAVPESIAWLIK-DASQFAIQVPAWPGKTFRINKWTILPSVDSATRTLQLRLQVNNP--- 310
                 699*****************************************9999995.99*******988888999999999********************... PP

      HlyD_3 100 siplkpG 106
                 + +lkpG
  CTQ26209.1 311 DEALKPG 317
                 9999998 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.8   1.6e-07   0.00049      25      79 ..     332     385 ..      18     386 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.6e-07
                 EEEEGCGEEECTTTSEEEEEEECTSB..EEEEEEEEEEEETTEEEESSSS-TTEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  25 vevrfdAfpqtktgkftgvVvgispd..rvpvrvvvekaqgpyyplriglkagalvr 79 
                  ++++ A+ ++   + ++ V ++++   +vp+rv+v   + +++ +r+gl++g++v+
  CTQ26209.1 332 LLIPSKALIDS---GSEQRVITVDNEgrFVPKRVQVFHESNGVTAIRSGLQEGEKVV 385
                 5899*******...*****************************************97 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0023       6.8      18      34 ..     145     161 ..     127     171 .. 0.75
   2 ?    4.2   0.0     0.013        38       4      33 ..     216     245 ..     213     249 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0023
  Biotin_lipoyl_2  18 VkdGqrVkaGdvLaelD 34 
                       + G+ Vk+G  L+el 
       CTQ26209.1 145 LTVGDKVKQGTPLLELT 161
                      578************97 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.013
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGdvLael 33 
                      +++ap++G++++   + G+ + + +v a +
       CTQ26209.1 216 TLKAPIDGVITAFDLRAGMNIAKDNVVAKI 245
                      6789******************99998877 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0013         4      46      73 .]     132     160 ..     128     161 .. 0.63
   2 ?    3.0   0.0     0.031        91      44      73 .]     216     245 ..     210     248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0013
                    EBSSSEEEEEES.STTTEEE-TTCEEEEE CS
  Biotin_lipoyl  46 eapkaGvvkeil.vkeGdtvevgdllaki 73 
                    +a++aG + +++   +Gd+v++g++l+++
     CTQ26209.1 132 QARAAGFINKVYpLTVGDKVKQGTPLLEL 160
                    66666777777634667777777776654 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.031
                    EEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtvevgdllaki 73 
                    +++ap +Gv++      G ++  + ++aki
     CTQ26209.1 216 TLKAPIDGVITAFDLRAGMNIAKDNVVAKI 245
                    578888888888888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2875.52
//
Query:       CTQ26210.1  [L=114]
Description: periplasmic copper-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-24   84.8   0.1    4.5e-24   84.2   0.1    1.3  1  CusF_Ec   Copper binding periplasmic protein CusF
  ------ inclusion threshold ------
        0.1   12.4   0.0       0.12   12.1   0.0    1.2  1  BamHI     Restriction endonuclease BamHI


Domain annotation for each model (and alignments):
>> CusF_Ec  Copper binding periplasmic protein CusF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.1     5e-28   4.5e-24       1      63 [.      47     108 ..      47     113 .. 0.93

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 5e-28
                 EEEEEEETTCTEEEEEE--BCCCTB-SEEEEEE--TTSEESS-STT-EEEEEEEEETTCEEEE CS
     CusF_Ec   1 GvVkavdaaagkvtlsHgpipalgwpaMtMdFkvadpallaglkaGdkVrFefekrdggeyvi 63 
                 Gv+ka+d +++k+t++H++ipa++wp+MtM+F+++++ +l+++k Gd V+F+f+++++    +
  CTQ26210.1  47 GVIKAIDMDNKKITIAHEAIPAVNWPPMTMRFTITPQTQLNNVKDGDSVDFTFVQQGNL-SLL 108
                 9*******************************************************764.555 PP

>> BamHI  Restriction endonuclease BamHI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.3e-05      0.12      18      55 ..      53      90 ..      37     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.3e-05
       BamHI 18 aelesilsevekvikkvvhPvgedlfainPtrkGnGvk 55
                +  ++ +   +++i  v++P  +  f+i P+ + n vk
  CTQ26210.1 53 DMDNKKITIAHEAIPAVNWPPMTMRFTITPQTQLNNVK 90
                4445556666789**********************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 882.02
//
Query:       CTQ26211.1  [L=461]
Description: copper/silver efflux system, outer membrane component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-47  159.5  37.2      4e-26   92.0  12.3    2.1  2  OEP         Outer membrane efflux protein
  ------ inclusion threshold ------
      0.059   13.9   4.0       0.69   10.4   0.3    2.4  2  APG6_N      Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8  17.0   1.7e-24   1.6e-20       3     188 .]      66     248 ..      64     248 .. 0.97
   2 !   92.0  12.3   4.5e-30     4e-26       9     188 .]     278     456 ..     272     456 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 1.7e-24
         OEP   3 ellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqleq 101
                  l+++al nn dl++a ++++ a+a++++  a+++P+l+  gs  y g    +++ +++     +gl+ls+ l  +g+ ++  +a +++  a+e+ +++
  CTQ26211.1  66 SLISTALTNNRDLRMATLKVQEARAQYRVTDADRYPQLNGDGSTTYGGKLKGDTTTSSDYA---AGLNLSYDLDFFGRLKNLSEADRQNFFASEEARRA 161
                 5899******************************************999888877777776...*********************************** PP

         OEP 102 arqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                 +   l+++v+q+y++ +la +ql++a+++l+++++ ++ +e+++  G +++l + qa+    ++ra++a+ + ql++a ++L++llg
  CTQ26211.1 162 VHILLIANVSQSYFNQRLAAAQLQVANDTLQNYQQSYAFVEKQLLTGSTTVLALEQARGMIESTRADIAKRQGQLAQANNALQLLLG 248
                 *************************************************************************************98 PP

  == domain 2  score: 92.0 bits;  conditional E-value: 4.5e-30
         OEP   9 lennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqleqarqqlr 107
                 l ++pd+++ae+ ++aa+an+ aa+a+f+P+++l++s + ++++ ++ ++ gg  + ++  ++++p+f+ g+++a++  a+ +++++  ++eq +q+  
  CTQ26211.1 278 LLQRPDILEAEHSLQAANANIGAARAAFFPSITLTSSLSGSSSELSSLFNAGGAMW-NFIPKIELPIFNAGRNQASLDLAEIRQQQQVVNYEQKIQSAF 375
                 5679****************************************999888777666.799999************************************ PP

         OEP 108 levaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                  eva a++  +++  q++++e++l++++ +l++a a+y+ G++s+++vl+aq++ + +r++l+e  +++q+++  L  +lg
  CTQ26211.1 376 KEVADALALRQSLADQIAAQERYLASLNITLQRATALYRHGAVSYIEVLSAQRDIFTTRQTLLELNYSRQANEITLFTALG 456
                 **********************************************************************99998877776 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.4    0.0065        58      48     112 ..     183     247 ..     137     262 .. 0.63
   2 ?   10.4   0.3   7.7e-05      0.69      50     107 ..     358     415 ..     341     434 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0065
      APG6_N  48 eleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlel 112
                 +l+ +++ l++ ++  +  +++L    ++  +le+++  +e++ +++ + + +  +  n+lql l
  CTQ26211.1 183 QLQVANDTLQNYQQSYAFVEKQLLTGSTTVLALEQARGMIESTRADIAKRQGQLAQANNALQLLL 247
                 33344444555555555555555555555555555555555555555555555555555555555 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 7.7e-05
      APG6_N  50 eeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreyne 107
                  + ++++ + e++ +++++e +++ + r++l++++aa+e+ l+ l+   +r    y+ 
  CTQ26211.1 358 IRQQQQVVNYEQKIQSAFKEVADALALRQSLADQIAAQERYLASLNITLQRATALYRH 415
                 456888999***********************************99988887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3334.61
//
Query:       CTQ26212.1  [L=227]
Description: DNA-binding response regulator in two-component regulatory system with CusS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-27   95.0   0.0    4.5e-27   94.4   0.0    1.3  1  Response_reg   Response regulator receiver domain
    2.7e-26   91.4   0.0    4.8e-26   90.6   0.0    1.3  1  Trans_reg_C    Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
       0.15   10.8   0.0       0.17   10.6   0.0    1.1  1  Peptidase_M29  Thermophilic metalloprotease (M29)
       0.19   12.0   0.0       0.31   11.3   0.0    1.3  1  MutS_I         MutS domain I


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.0     1e-30   4.5e-27       1     112 []       3     113 ..       3     113 .. 0.99

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 1e-30
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +liv+D+++  e l++ l+e+g+ +v+ a++g + ++l+ ++++dl++lDi++p+++G ++++++r+  + +p+++lta ++ e++v++l++gadd+
    CTQ26212.1   3 ILIVEDEKKTGEYLTKGLTEAGF-VVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGWDIVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDY 98 
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   l+Kpf+ +eLl++++
    CTQ26212.1  99 LVKPFAFAELLARVR 113
                   ***********9985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   1.1e-29   4.8e-26       3      77 .]     148     221 ..     146     221 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 1.1e-29
                  EEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   3 eveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  +++lt+kef lLe++l+++g+v++r  + ++vw+ ++d+d++++dv+++rLR k+++  ++p+lI+tvrgvGY+l
   CTQ26212.1 148 RITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRAKIDN-DFEPKLIQTVRGVGYML 221
                  799******************************************************.679************97 PP

>> Peptidase_M29  Thermophilic metalloprotease (M29)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.8e-05      0.17       8      69 ..     105     166 ..     101     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.8e-05
                    HHHHHHHTTT---TT-EEEEEEETT-HHHHHHHHHHHHHTT-SEEEEEEE-HHHHHHHHHHS CS
  Peptidase_M29   8 yAellvkvglnlqkgqevvinaevealelarlvaeeaykagakkvvvewsdeeltkerlkna 69 
                    +Aell +v + l++g  v+++++ +a++l   ++++ + +ga  ++++ ++ +l + +l+++
     CTQ26212.1 105 FAELLARVRTLLRRGAAVIVESQFQAADLCVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQ 166
                    8*******************************************999655555555555554 PP

>> MutS_I  MutS domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     7e-05      0.31      70     112 ..     112     154 ..     100     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7e-05
                 HHHHHHTT-EEEEEEE-S-HHHHS.S--EEEEEEEBTTC-TTS CS
      MutS_I  70 lrkLvekgykVavveqtetpaekkgvvkrevvrviTpGtltde 112
                 +r+L+++g  V v  q + ++   ++v+r+v+r +T+ tlt++
  CTQ26212.1 112 VRTLLRRGAAVIVESQFQAADLCVDLVSRKVTRGATRITLTSK 154
                 799****************999999**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1657.78
//
Query:       CTQ26213.1  [L=477]
Description: sensory histidine kinase in two-component regulatory system with CusR, senses copper ions [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-20   71.4   0.0    1.6e-19   70.5   0.0    1.5  1  HATPase_c        Histidine kinase-, DNA gyrase B-, and HSP90-
    3.5e-11   43.0   0.7    1.5e-10   41.0   0.7    2.2  1  HisKA            His Kinase A (phospho-acceptor) domain
    1.1e-10   41.7   0.2    4.9e-10   39.6   0.1    2.3  2  HAMP             HAMP domain
    1.3e-06   28.3   0.0    2.2e-06   27.5   0.0    1.4  1  HATPase_c_5      GHKL domain
    2.9e-05   24.0   0.0    8.2e-05   22.6   0.0    1.8  1  HATPase_c_2      Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.027   15.1   1.1        4.7    7.9   0.3    2.3  2  DUF3139          Protein of unknown function (DUF3139)
        0.1   13.0   0.1        2.2    8.7   0.0    2.4  2  DUF3566          Transmembrane domain of unknown function (DU
        2.6    8.5   4.0          2    8.9   0.8    2.1  2  FeoB_associated  FeoB-associated Cys-rich membrane protein


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   6.9e-23   1.6e-19       1     109 [.     368     476 ..     368     477 .] 0.93

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 6.9e-23
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                 gd+  Lr++isnl++Na+++++ ++ ++++++ s +++++ ve+ G  i  e+l++lf++f++ d s++r+g+g+G+Gl+ivk++v  ++G++  +s+ 
  CTQ26213.1 368 GDPLMLRRAISNLLSNAIRYTPAGQAVTIQLSESAETVRLVVENPGTPIAAEHLPRLFDRFYRvDPSRQRKGEGSGIGLAIVKSIVGAHHGSVAAQSDL 466
                 68889***************7788899*****7669***************************************************9*******7777 PP

                 TTEEEEEEEEE CS
   HATPase_c  99 grGttftftlp 109
                  r t+f++ lp
  CTQ26213.1 467 -RSTRFIVVLP 476
                 .9999*99988 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.7   6.5e-14   1.5e-10       2      66 ..     259     323 ..     258     324 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 6.5e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 ++ f a++aHE+rtP++ +   +e+   + +  +el+e l +  +e  r++++v+d+L l++ ++
  CTQ26213.1 259 QSNFSADIAHEIRTPITNLVTQTEIALSQSRSQQELEEVLYSNLEEFSRMSRMVSDMLFLAQADN 323
                 678**********************75544677999999999999999*************9886 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1   2.2e-13   4.9e-10       4      53 .]     204     254 ..     201     254 .. 0.92
   2 ?   -2.4   0.0         3   6.7e+03       2      17 ..     266     281 ..     266     282 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 2.2e-13
                 HTTHHHHHHHHHHHHHHTTTBTSSTCCT.TSSSHHHHHHHHHHHHHHHHHH CS
        HAMP   4 rrilrPLrrLaraarriaaGdldtrlpv.sgrDEiGeLarafNaMldrLre 53 
                  +  +P+r+++r++++i + dld+rl++   + E+ +La +fN+Ml+r+++
  CTQ26213.1 204 YQGHKPIRQISRQIQNITSRDLDVRLDPqAVPVELERLALSFNHMLERIED 254
                 56679***********************99******************985 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3
                 HHHTTHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraa 17 
                 +a+ i  P+ +L++++
  CTQ26213.1 266 IAHEIRTPITNLVTQT 281
                 5788999****99987 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   9.8e-10   2.2e-06       6      92 ..     373     467 ..     369     476 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 9.8e-10
  HATPase_c_5   6 lcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg...ek.........kklesskskkeehGiGlksireivkkykgnlsieaed 91 
                  l + ++nlL NAi    + +     ++++++e+ +++ + +eN+ +    e          +  +s+++k+e  GiGl  +++iv  ++g+++ + + 
   CTQ26213.1 373 LRRAISNLLSNAIRYTPAGQ----AVTIQLSESAETVRLVVENPGTPiaaEHlprlfdrfyRVDPSRQRKGEGSGIGLAIVKSIVGAHHGSVAAQSDL 466
                  556799******98776655....8*******************66655522344454344556699************************9988765 PP

  HATPase_c_5  92 g 92 
                  +
   CTQ26213.1 467 R 467
                  5 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.7e-08   8.2e-05       5     109 ..     336     453 ..     332     463 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.7e-08
  HATPase_c_2   5 pehvrtvrevaeavlrraglseelld..........eirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep. 91 
                  +e+v +v e++ea++++  ++ + +            +r a++ +++Na+++   +   + v+++l+ ++e+++++v++ G +  +e+lp+     + 
   CTQ26213.1 336 AEEVHKVFEFFEAWAEEKAVALRFVGspcrvtgdplMLRRAISNLLSNAIRYTPAG---QAVTIQLSESAETVRLVVENPGTPIAAEHLPRLFDRFYr 430
                  5689999999999999999999999999999999999***************9996...67**********************999998876654448 PP

  HATPase_c_2  92 .....keslkegGrGlalikglv 109
                       + +++ +G+Gla++k++v
   CTQ26213.1 431 vdpsrQRKGEGSGIGLAIVKSIV 453
                  8999999************9987 PP

>> DUF3139  Protein of unknown function (DUF3139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.011        25       9      40 ..      14      46 ..      12      67 .. 0.72
   2 ?    7.9   0.3    0.0021       4.7       5      39 ..     184     213 ..     180     226 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.011
     DUF3139  9 illiillvivkvfl.glvgskpikkylankkld 40
                + +i+l  i+++f  +++  + +k ++ + ++ 
  CTQ26213.1 14 TFFISLATIIAFFAfTWIMIHSVKAHFEERDVH 46
                567888887777769999999999999994443 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0021
     DUF3139   5 iiililliillvivkvfl.glvgskpikkylankkl 39 
                 +i   ++i+ll+i++v++  ++g+kpi +      +
  CTQ26213.1 184 LISAASIISLLIIAIVLFvVYQGHKPIRQ------I 213
                 56666788888887777779******955......3 PP

>> DUF3566  Transmembrane domain of unknown function (DUF3566)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.15   3.5e+02      16      39 ..      10      33 ..       5      85 .. 0.75
   2 ?    8.7   0.0   0.00098       2.2      21      65 ..     183     227 ..     178     243 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.15
     DUF3566 16 vlklsfllsvalfivlvvavavly 39
                +++l+f +s+a++i+ +  ++++ 
  CTQ26213.1 10 ATRLTFFISLATIIAFFAFTWIMI 33
                578999999999888876655543 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00098
     DUF3566  21 fllsvalfivlvvavavlylvldalgvfdkvnslvkdlvgeessl 65 
                  l+s a +i l++ ++vl++v ++ + + ++++ ++++++++ ++
  CTQ26213.1 183 KLISAASIISLLIIAIVLFVVYQGHKPIRQISRQIQNITSRDLDV 227
                 58999*******************************999988544 PP

>> FeoB_associated  FeoB-associated Cys-rich membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.83   1.9e+03       7      23 ..      22      38 ..      17      42 .. 0.72
   2 ?    8.9   0.8   0.00087         2       4      22 ..     190     208 ..     187     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.83
  FeoB_associated  7 liiaaavafvirrlikk 23
                     +i + a  +++++++k+
       CTQ26213.1 22 IIAFFAFTWIMIHSVKA 38
                     45557888889999887 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00087
  FeoB_associated   4 IVgliiaaavafvirrlik 22 
                      I+ l+i+a+v+fv++  +k
       CTQ26213.1 190 IISLLIIAIVLFVVYQGHK 208
                      9**************8777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      711  (0.0396564); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3563.72
//
Query:       CTQ26214.1  [L=88]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-26   90.9   2.2    4.2e-26   90.7   2.2    1.0  1  DUF1778   Protein of unknown function (DUF1778)


Domain annotation for each model (and alignments):
>> DUF1778  Protein of unknown function (DUF1778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   2.2   2.3e-30   4.2e-26       1      79 [.       8      86 ..       8      87 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 2.3e-30
     DUF1778  1 RLelRispeakeliqrAAalsgktltdFvleaaleaAekviedherieLseedfqafvaaLdeppkpnprLlkaarrlk 79
                R++lR++++ k++i++AAa+s++t+t+Fv+++a e+A +vie+h+r+ L+e+ ++ +++a+ +pp+pn+rL++aa+rl+
  CTQ26214.1  8 RIDLRLTDDDKSIIEEAAAISNQTITQFVVASASERAAEVIEQHRRMVLNEQSWSLVMEAITQPPAPNDRLKRAAKRLQ 86
                9**************************************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 658.55
//
Query:       CTQ26215.1  [L=177]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-07   30.2   0.0    5.6e-07   29.9   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      1e-06   28.7   0.0    2.8e-06   27.3   0.0    1.6  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.7e-05   25.1   0.0      2e-05   24.8   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    0.00021   21.2   0.0    0.00042   20.2   0.0    1.4  1  FR47             FR47-like protein
  ------ inclusion threshold ------
       0.18   12.0   0.0       0.33   11.1   0.0    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.6e-10   5.6e-07      26      75 ..      93     151 ..      40     152 .. 0.76

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.6e-10
                     CTEEEEE-GGGTTSSHHHHHHHH.........TTSEEE.EEEEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  26 eitrlaVdpeyrgkGiGraLlea.........aekgii.leqlelnaekaikfYeklGFe 75 
                      ++rla+d++ +g+G G  L+++         ++ gi  l++  ln+ ka +fY +lGF+
      CTQ26215.1  93 TLGRLAIDKSVQGQGWGEMLVAHamrvvwgasKAVGIYgLFVEALNE-KAKAFYLRLGFI 151
                     5677*****************98566555443113322222224444.8999*******7 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.81   2.9e+03       6      26 ..      24      40 ..      22      68 .. 0.59
   2 !   27.3   0.0   7.9e-10   2.8e-06      53     112 ..      93     156 ..      78     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.81
  Acetyltransf_10  6 seegietf.kefispealreri 26
                      ee+++tf ke     +l+++ 
       CTQ26215.1 24 GEEALNTFlKE-----HLKRQH 40
                     66777777443.....333333 PP

  == domain 2  score: 27.3 bits;  conditional E-value: 7.9e-10
  Acetyltransf_10  53 hisllfVdpeyrgqGigkaLleaveee..aekdgikl.eltvnasp.yavpfYeklGFkavgee 112
                       +++l++d++ +gqG g++L+ ++ +      +  ++  l v+a + +a++fY +lGF ++ +e
       CTQ26215.1  93 TLGRLAIDKSVQGQGWGEMLVAHAMRVvwGASKAVGIyGLFVEALNeKAKAFYLRLGFIQLVDE 156
                      689*********************999432234445589*******************998554 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   5.5e-09     2e-05      56     117 .]      87     150 ..      16     150 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 5.5e-09
                     TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEE.EEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  56 ekggvayieslaVspeyrgkGlGsaLlealeeraree.gikki.vlaveedndaairlYeklGF 117
                     ++ + + + +la++++ +g+G G +L+ ++++ +     +  i  l ve+ n++a ++Y +lGF
      CTQ26215.1  87 QNAPSVTLGRLAIDKSVQGQGWGEMLVAHAMRVVWGAsKAVGIyGLFVEALNEKAKAFYLRLGF 150
                     5566778889*********************87777754444547799999************9 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.2e-07   0.00042      22      80 ..      92     153 ..      86     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.2e-07
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-E...EEEEETT-HHHHHHHHHHT-EEE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaergktv...llvvvasNtpsirlyeklGfeki 80 
                   lg l ++++++++G+g  lv+   + +  + k v    l v a N+++ ++y +lGf ++
  CTQ26215.1  92 VTLGRLAIDKSVQGQGWGEMLVAHAMRVVWGASKAVgiyGLFVEALNEKAKAFYLRLGFIQL 153
                 5799*******************99999987776651115789****************987 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.3e-05      0.33      24      62 ..      91     129 ..      76     146 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.3e-05
  Acetyltransf_CG  24 vldfthTeVpeelrGkGiAkkLvkaalddareeglkvvp 62 
                       +++    ++++++G+G ++ Lv +a+  +  + + v +
       CTQ26215.1  91 SVTLGRLAIDKSVQGQGWGEMLVAHAMRVVWGASKAVGI 129
                      677888899*****************9877666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1430.33
//
Query:       CTQ26216.1  [L=373]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.5e-100  336.7   0.0   1.8e-100  336.5   0.0    1.0  1  Cupin_4       Cupin superfamily protein
     0.0088   15.9   0.1       0.02   14.8   0.1    1.6  1  AraC_binding  AraC-like ligand binding domain
  ------ inclusion threshold ------
       0.05   13.3   0.2       0.28   10.9   0.0    2.2  3  Cupin_2       Cupin domain
      0.098   12.3   0.1       0.58    9.8   0.0    2.0  2  Cupin_8       Cupin-like domain
       0.12   12.8   0.0       0.24   11.8   0.0    1.5  1  JmjC          JmjC domain, hydroxylase
       0.21   11.2   0.0       0.37   10.4   0.0    1.4  1  Cupin_1       Cupin
       0.72    9.9   3.7        6.7    6.9   0.4    2.7  2  TAD2          Transactivation domain 2


Domain annotation for each model (and alignments):
>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.5   0.0    7e-104  1.8e-100       2     319 .]      10     310 ..       9     310 .. 0.98

  Alignments for each domain:
  == domain 1  score: 336.5 bits;  conditional E-value: 7e-104
                 HHHHHHTTTTS-EEE--S-CCCCCCHHHHHHHHCCHHCHHCCC.EECTCCEEEEECCCCEEEE-SSB-SCCCHHHHHHCCHCC.CTTEEEEC-HHHC-H CS
     Cupin_4   2 eeFlreyWqkkpllirralpafagllspddLaeLaeeeevearlikgerdkaewkvsrgpleerrlrklpakdwtlLvqgvslwkkavaqLlqpfrfep 100
                  eFl++yWqk+p+++++a+p+f+++++pd+La+La+e ev++rl+  + ++++w+ s+gp+e+  ++ l+++ w+lL q+v++w+   a+L+ pfr++p
  CTQ26216.1  10 PEFLEKYWQKQPVVLKNAFPDFVDPITPDELAGLAMEPEVDSRLV--SLKNGKWQASNGPFEH--FDGLGETGWSLLAQAVNHWHMPAAELVRPFRVLP 104
                 68*******************************************..9999************..********************************** PP

                 HHHHHHHHHHHS-EEEEEEEE-TTBBSS-SEE-SSEEEEEEEEC-EEEEEE-SCCCTTSSSEE--TTCCG--S-SEEEEE-TT-EEEE-TT-EEEEEBB CS
     Cupin_4 101 ewrlddvmesfslvgsnvYatpggsqgvgpHyDdyDVfllQleGrkrWrvykptvpelelkseeplkildefepvedfvLepGDlLYlPrgviHqgvae 199
                 +wrldd+m+sf        + pgg  gvgpH+D+yDVf++Q++G +rWrv++ + p+ +++++++l ++d+f p++d+ L+pGD+LY+P+g++H+g ++
  CTQ26216.1 105 DWRLDDLMISF--------SVPGG--GVGPHIDQYDVFIIQGMGSRRWRVGD-KLPMRQFCPHPALLHVDPFPPIIDEDLQPGDILYIPPGFPHDGITH 192
                 ***********........*****..*************************6.********************************************** PP

                 T-CCEEEEEECCEEHCCHHHCHHHHHHHHHHHHHHHCTSCHHCTCGTTTGGGTTS-HHHHHHHHHHHHHHHHHHHCS-HHHHCCHHHHHHHHS----TT CS
     Cupin_4 200 desltlSvglraptaaellesvldllldklpeiderlrdallravqargeidsdsidalaaqlsellrdpalleeflgqlltsssrekdiaqslppiee 298
                 +++l++Svg+r p+ ++l++s++d++l+++ +  e+++d++l+ ++++g++++ ++++l+ ++ +++r+p+++++++g+++t++++e dia+++pp+ee
  CTQ26216.1 193 ETALNYSVGFRGPNGRDLISSFADYVLENDLGD-EHYSDPDLTCREHPGRVEEYELERLRTMMIDMIRQPEDFKQWFGSFVTTPRHELDIAPAEPPYEE 290
                 ********************************5.***************************************************************** PP

                 CCTCCCCTT-ECEESSTTSEE CS
     Cupin_4 299 deledllaedgaelsrlsslr 319
                 +e+ d+l   g++lsrls lr
  CTQ26216.1 291 EEVLDAL-LGGEKLSRLSGLR 310
                 **99999.9999999998765 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   7.8e-06      0.02      44      78 ..     172     204 ..     170     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.8e-06
                   EE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE-- CS
  AraC_binding  44 dlgpGdlfLlppgepHdyesdsedgweyrwlyfeg 78 
                   dl+pGd++ +ppg pHd+  ++      ++++f+g
    CTQ26216.1 172 DLQPGDILYIPPGFPHDGITHE--TALNYSVGFRG 204
                   699*****************99..56666666665 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         1   2.6e+03       7      28 ..     118     136 ..     116     151 .. 0.67
   2 ?   10.9   0.0   0.00011      0.28      40      59 ..     172     191 ..     169     197 .. 0.85
   3 ?   -3.6   0.0       3.7   9.5e+03      40      50 ..     311     321 ..     310     323 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1
                 TTEEEEEECSSSEEEEEEEEES CS
     Cupin_2   7 pGesapshrHpgedeffyVleG 28 
                 pG+  ++h+ ++    +++++G
  CTQ26216.1 118 PGGGVGPHIDQYD---VFIIQG 136
                 8888888998887...444444 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00011
                 EEETTEEEEE-TT-EEEEEE CS
     Cupin_2  40 eleaGdsvyfpagtpHrfrN 59 
                 +l++Gd++y+p+g pH+ + 
  CTQ26216.1 172 DLQPGDILYIPPGFPHDGIT 191
                 79**************9765 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.7
                 EEETTEEEEE- CS
     Cupin_2  40 eleaGdsvyfp 50 
                 +l+ Gds+++ 
  CTQ26216.1 311 VLHIGDSFFVH 321
                 57889999985 PP

>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.3   7.7e+02       8      23 ..      15      30 ..      10      51 .. 0.83
   2 ?    9.8   0.0   0.00022      0.58     213     231 ..     170     188 ..     158     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.3
     Cupin_8  8 yvakskPviikgalkd 23
                 + +++Pv++k+a+ d
  CTQ26216.1 15 KYWQKQPVVLKNAFPD 30
                456899******9887 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00022
     Cupin_8 213 evtlnaGevLylPalWfHe 231
                 + +l++G++Ly+P ++ H 
  CTQ26216.1 170 DEDLQPGDILYIPPGFPHD 188
                 568************9996 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.5e-05      0.24      85     114 .]     173     202 ..     156     202 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-05
                 E-TT-EEEE-TT-EEEEEESSSEEEEEEEE CS
        JmjC  85 qkpgefVfvfpgayHsvfnlgfniaeavnf 114
                  +pg++++++pg +H ++++ ++++ +v f
  CTQ26216.1 173 LQPGDILYIPPGFPHDGITHETALNYSVGF 202
                 58**********************999876 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00014      0.37      79      97 ..     169     187 ..     110     212 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
                 EEEEEETTEEEEE-TT-EE CS
     Cupin_1  79 fhkklreGdvfvvPaglvh 97 
                 ++ +l++Gd++++P+g++h
  CTQ26216.1 169 IDEDLQPGDILYIPPGFPH 187
                 4566**************9 PP

>> TAD2  Transactivation domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2      0.04     1e+02       1      12 [.     103     114 ..     103     116 .. 0.85
   2 ?    6.9   0.4    0.0026       6.7       6      20 ..     254     268 ..     252     270 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.04
        TAD2   1 LPsqAmDDLmLs 12 
                 LP   +DDLm+s
  CTQ26216.1 103 LPDWRLDDLMIS 114
                 677789****98 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0026
        TAD2   6 mDDLmLsPDDiEqWF 20 
                 m D++  P+D  qWF
  CTQ26216.1 254 MIDMIRQPEDFKQWF 268
                 7799999******** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2772.78
//
Query:       CTQ26217.1  [L=61]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 516.62
//
Query:       CTQ26218.1  [L=105]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.085   12.8   0.0       0.14   12.1   0.0    1.3  1  Stn1_C    Telomere capping C-terminal wHTH


Domain annotation for each model (and alignments):
>> Stn1_C  Telomere capping C-terminal wHTH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.6e-06      0.14      33      56 ..       5      28 ..       2      39 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.6e-06
      Stn1_C 33 idlkpLknlkeYiqkrisvlikLq 56
                ++++pL++l+ Yiq+r+  l+ L 
  CTQ26218.1  5 LNWSPLRQLFTYIQERFTFLVLLC 28
                799*****************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 772.25
//
Query:       CTQ26219.1  [L=375]
Description: putative transporter subunit: membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-33  116.6  15.4    1.5e-33  116.4  15.4    1.0  1  ABC2_membrane_3  ABC-2 family transporter protein
    2.7e-26   92.3  14.6    2.7e-26   92.3  14.6    1.9  3  ABC2_membrane    ABC-2 type transporter
    6.2e-16   58.5  17.8    8.7e-16   58.0  17.8    1.3  1  ABC2_membrane_2  ABC-2 family transporter protein
    7.2e-05   22.8  12.4    7.2e-05   22.8  12.4    2.9  3  ABC2_membrane_4  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4  15.4   3.3e-37   1.5e-33      11     344 ..      27     364 ..      24     366 .. 0.83

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 3.3e-37
  ABC2_membrane_3  11 Piilvlllglifs.nsve..ddentpiavvdednsslsqqlvealeaspsvelvyevdseeeakkalkngdidgilvipkgfskdllkgesatv 101
                       +i++++ ++++s ++v   + +  piav d d+s+ls+ +++a+   p +    e+ + +e+   l+ g ++ ++ ip +f +d+l  +++++
       CTQ26219.1  27 ALIVFAFTVSVYSsATVMpgSLHLAPIAVADMDKSQLSSRIINAFYR-PWFL-EPELITADEMDAGLDAGRYTFAINIPPNFQRDVLADRQPEI 118
                      334444444443323333667888999******99999888888887.4444.588999*********************************** PP

  ABC2_membrane_3 102 tvlinssnlnsskailnalnsllqqlnasalvlqseatstsaninvestqleeelsnvasflvg.liliilifitasfiavsiveEkesrikel 194
                      +v ++++  +++ + + +++++++ + +s  +      ++  ++++  + +++++   ++f ++ +i+  + ++ ++ + +++++E+e++++e 
       CTQ26219.1 119 QVNVDATRMSQAFTGNGYIQNIITGEVNSFIA--RYRDNSVLPVELAVRMRFNPNLEQERFGAVmAIINNITMLAIVLTGSALIREREHGTIEH 210
                      *********************55555555544..67777788999999999****9999998884444555555555567789*********** PP

  ABC2_membrane_3 195 qlvsgvsplqywlskilgdflvyllqlllilllafgl..gipfgnlglll.llfllfglayialgyllsslfknsetaqilifivilllsgffg 285
                      +lv++++p++++l+ki +++lv l+++ l l+l+++   ++p+++++ l+ l + l ++a++++g ++++l +++    +l+++v+l+l +++g
       CTQ26219.1 211 LLVMPITPFEIMLAKIWSMGLVVLVVSGLSLILMVQGilQVPIEGSIPLFmLGVALSLFATTSIGIFMGTLARSMPQLGLLMILVLLPLQMLSG 304
                      ******************************9984444455****9998888**************************99*************** PP

  ABC2_membrane_3 286 glfpledlpsalkwifsiiPffapglgllrlitgd.plweillsliilalfavvylllal 344
                      g+ p e++p  ++ i+   P++++  +   +++   +++ +++ ++ l++++ v++ +al
       CTQ26219.1 305 GSTPRESMPQLVQDIMLTMPTTHFVSLAQAILYRGaSFAIVWPQFLTLLAIGGVFFTIAL 364
                      *******************************855549999**666666666666666665 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.85   3.8e+03      59      68 ..      28      37 ..      17      48 .. 0.47
   2 !   92.3  14.6   5.9e-30   2.7e-26      52     210 .]     172     337 ..     126     337 .. 0.89
   3 ?   -3.4   0.8       1.2   5.3e+03     139     149 ..     350     360 ..     340     367 .. 0.38

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.85
  ABC2_membrane 59 svlflafsal 68
                   +++f +++++
     CTQ26219.1 28 LIVFAFTVSV 37
                   1111111222 PP

  == domain 2  score: 92.3 bits;  conditional E-value: 5.9e-30
  ABC2_membrane  52 r.......pgllffsvlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelpvsllqalifll.ivyflvgldls.rfflflllll 138
                            +++++  +++la + lt++a+++ere+g++e++lv+p+ ++++++lak++++ +v l+++ + l+ +v  ++ ++++ ++ lf+l + 
     CTQ26219.1 172 LeqerfgaVMAIINNITMLA-IVLTGSALIREREHGTIEHLLVMPI-TPFEIMLAKIWSMGLVVLVVSGLSLIlMVQGILQVPIEgSIPLFMLGVA 265
                    033444559999999*****.9999999******************.*************99999999988887999999****9777999***** PP

  ABC2_membrane 139 ltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlqwiaylnPltyavealrsnlf 210
                    l+++a++s+g+++++la+s+ + ++l+ lvllpl +lsG   p++smp+ +q i+   P t++v++ +++l+
     CTQ26219.1 266 LSLFATTSIGIFMGTLARSMPQLGLLMILVLLPLQMLSGGSTPRESMPQLVQDIMLTMPTTHFVSLAQAILY 337
                    ***********************************************99*****************999986 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.2
  ABC2_membrane 139 ltalaasslgl 149
                    lt+la+ ++++
     CTQ26219.1 350 LTLLAIGGVFF 360
                    22222222222 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0  17.8   1.9e-19   8.7e-16      76     285 ..      97     369 ..       9     370 .. 0.65

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 1.9e-19
  ABC2_membrane_2  76 v.................................................................................vstimavlipvi 88 
                                                                                                         +++++  i+++
       CTQ26219.1  97 TfainippnfqrdvladrqpeiqvnvdatrmsqaftgngyiqniitgevnsfiaryrdnsvlpvelavrmrfnpnleqerfgAVMAIINNITML 190
                      144444444444444444455555555555555555555555555788888888888888888888888888888888998877888889**** PP

  ABC2_membrane_2  89 aalfgadaiagEkergTlkllLskPvsRdeillgKfigglaiglaiavallatvllalaiilalgivlaledllllvvasvlllllvvflalgl 182
                      a++++  a+ +E+e gT++ lL  P++  ei l+K+ ++ ++     v+++ ++ l l+++ +l ++++++ + l+++ + l+l+  + +++g+
       CTQ26219.1 191 AIVLTGSALIREREHGTIEHLLVMPITPFEIMLAKIWSMGLV-----VLVVSGLSLILMVQGILQVPIEGS-IPLFMLGVALSLF--ATTSIGI 276
                      **************************************9999.....666666556677777777777765.4444444444444..349**** PP

  ABC2_membrane_2 183 llSsvarssreaaalalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdlnalgstatnllilllllavll 276
                      ++ ++ars  +  +l++ +++ l++l++++       +   ++ +++ +++ l  pt ++  l ++il +++    ++ +  +l+ll++  v++
       CTQ26219.1 277 FMGTLARSMPQLGLLMILVLLPLQMLSGGST----PRE---SM-PQLVQDIMLTMPTTHFVSLAQAILYRGASF--AIVWPQFLTLLAIGGVFF 360
                      *******555444444444444444444444....223...33.456777888999*************99755..9***************** PP

  ABC2_membrane_2 277 vlgyvlFkr 285
                       +++ +F++
       CTQ26219.1 361 TIALLRFRK 369
                      *******98 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.28   1.2e+03     140     149 ..      35      44 ..      18      73 .. 0.42
   2 !   22.8  12.4   1.6e-08   7.2e-05      43     164 ..     174     284 ..     156     323 .. 0.65
   3 ?   -0.2   1.0      0.18   8.2e+02     116     158 ..     295     336 ..     286     364 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.28
  ABC2_membrane_4 140 kclelgllvf 149
                       ++   ++v+
       CTQ26219.1  35 VSVYSSATVM 44 
                      2222222222 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.6e-08
  ABC2_membrane_4  43 paefyslsvfgftlllllplilgiiasylifrEeqndtlknLltiPvsrtklllaKlivllllsvllmlvtflitvlfallsgfvgfsvklvle 136
                      ++ f   +++ +++    +++ +++++  + rE++ +t+  Ll++P++  +++laK+  + l++++++ ++++++     + g  ++ +++ + 
       CTQ26219.1 174 QERFGAVMAIINNI----TMLAIVLTGSALIREREHGTIEHLLVMPITPFEIMLAKIWSMGLVVLVVSGLSLILM-----VQGILQVPIEGSIP 258
                      44444444444333....33444456777789***************************9999888887755433.....33333343333222 PP

  ABC2_membrane_4 137 llkkclelgllvffavlpi.ialvllkks 164
                          +++ ++l++fa++ i i++ +l +s
       CTQ26219.1 259 ---LFMLGVALSLFATTSIgIFMGTLARS 284
                      ...33344455555555553444444433 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.18
  ABC2_membrane_4 116 itvlfallsgfvgfsvklvlellkkclelgllvffavlpiial 158
                      + + + +lsg++ +  +++ +l++ +++++ ++ f++l+  +l
       CTQ26219.1 295 VLLPLQMLSGGS-TPRESMPQLVQDIMLTMPTTHFVSLAQAIL 336
                      333345666655.334667778888888887777777764333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2669.16
//
Query:       CTQ26220.1  [L=914]
Description: fused ribosome-associated ATPase: ATP-binding protein; ATP-binding protein; putative membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-54  183.0   0.0    1.5e-25   90.3   0.0    2.7  3  ABC_tran         ABC transporter
    4.3e-40  137.9   3.5    5.6e-40  137.5   3.5    1.1  1  ABC2_membrane_3  ABC-2 family transporter protein
    3.2e-20   72.6   4.4    5.4e-20   71.8   4.4    1.3  1  ABC2_membrane_2  ABC-2 family transporter protein
    1.5e-18   67.7   0.5    3.6e-05   23.7   0.0    4.3  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    2.5e-18   66.3  12.8    1.1e-17   64.2  10.6    2.1  2  ABC2_membrane    ABC-2 type transporter
    7.2e-05   22.7   0.0        1.9    8.1   0.0    3.1  3  AAA_15           AAA ATPase domain
     0.0001   22.3   0.0        0.1   12.5   0.1    2.3  2  RsgA_GTPase      RsgA GTPase
     0.0003   20.5   0.2        0.4   10.5   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
    0.00032   20.7  10.4    0.00065   19.7  10.4    1.4  1  ABC2_membrane_4  ABC-2 family transporter protein
    0.00037   20.9   0.1       0.14   12.5   0.1    2.9  2  AAA_16           AAA ATPase domain
      0.004   17.2   0.1        0.7   10.0   0.1    2.4  2  MMR_HSR1         50S ribosome-binding GTPase
     0.0045   17.2   0.0         12    6.2   0.0    3.5  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
     0.0048   17.4   0.3       0.24   11.9   0.1    2.2  2  AAA_23           AAA domain
  ------ inclusion threshold ------
      0.013   15.0   0.4         48    3.3   0.0    3.8  4  SMC_N            RecF/RecN/SMC N terminal domain
      0.016   15.5   0.2        6.7    7.0   0.1    3.0  3  AAA_22           AAA domain
      0.042   14.2   0.1        4.4    7.7   0.0    2.5  2  RNA_helicase     RNA helicase
      0.046   13.7   0.2        4.5    7.3   0.0    2.7  2  AAA_5            AAA domain (dynein-related subfamily)
      0.047   13.1   0.1        2.2    7.6   0.0    2.6  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.053   13.4   0.0        1.7    8.6   0.0    2.2  2  Rad17            Rad17 P-loop domain
      0.074   13.5   0.3        8.5    6.8   0.0    2.8  2  AAA              ATPase family associated with various cellul
      0.082   12.6   0.0         13    5.5   0.0    2.6  2  AAA_30           AAA domain
       0.12   11.4   0.5         13    4.6   0.1    2.2  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
       0.13   11.8   0.0       0.27   10.8   0.0    1.4  1  NIR_SIR          Nitrite and sulphite reductase 4Fe-4S domain
       0.17   11.5   0.2        2.4    7.7   0.0    2.7  3  AAA_25           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   2.8e-28   2.1e-25       1     136 [.      28     175 ..      28     176 .. 0.96
   2 !   90.3   0.0   2.1e-28   1.5e-25       2     137 .]     293     436 ..     292     436 .. 0.94
   3 ?   -2.1   0.0       6.9   5.1e+03     101     134 ..     593     626 ..     583     627 .. 0.77

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 2.8e-28
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS..--S-TTSBHHHH.............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx..xxxxxxxxxxxx.............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe..pqlfpeltvren.............esde 83 
                 l+++sl + + ++v+++G+ G GKS+Ll+l+ag    ++G++ + g d+++ + ++++  +i+++pq   ++l  +l+v+en             e++ 
  CTQ26220.1  28 LRDISLAIPARRMVGLIGPDGVGKSSLLSLIAGARIIEQGNVMVLGGDMRDvHHRREVCPKIAWMPQGlgKNLYHTLSVYENvdffarlfghdkaEREL 126
                 689*****************************************9999999888999999********999********************98766666 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +i+++l++ gl  ++d+++     +LSgG+kq++ l++al+ +p+ll+lDEpt
  CTQ26220.1 127 RINELLQSTGLAPFRDRPA----GKLSGGMKQKLGLCCALIHDPQLLILDEPT 175
                 7******************....*****************************9 PP

  == domain 2  score: 90.3 bits;  conditional E-value: 2.1e-28
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 ++v++ + +ge+ +++G+nG+GKSt +k+l+gll   eGe +l g++++  +   +r+++g+++q  +l +eltvr+n             e   ++++
  CTQ26220.1 293 DHVNFRIARGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDP-KDIATRQRVGYMSQAFSLYSELTVRQNlelharlfhipdgEIPGRVAE 390
                 78************************************************.666899**********************99999999888888888999 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + +++ l+e++d       + L  G +qr++la a++ +p++l+lDEpt+
  CTQ26220.1 391 MCERFMLTEVEDALP----ADLPLGIRQRLSLAVAVIHRPEMLILDEPTS 436
                 999999999888887....*****************************96 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 6.9
                 GESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 101 vvksspssLSgGqkqrvalarallkkpkllllDE 134
                 v++++++  S+G+ q +a  r ++++++l   DE
  CTQ26220.1 593 VLDRDQTLSSQGWSQNLAGSRYFIEQAPLHSYDE 626
                 45444555689*************9999998888 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   3.5   7.5e-43   5.6e-40      15     344 ..     571     906 ..     563     907 .. 0.89

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 7.5e-43
  ABC2_membrane_3  15 vlllglifsnsve.ddentpiavvdednsslsqqlvealeaspsvelvyevdseeeakkalkngdidgilvipkgfskdllkgesatvtvlins 107
                       ++l++i++++ + d+e++++av+d d++  sq   ++l+ s ++  + ++ s +e+ + +++g++  ++ ip +f +d+  g++ ++ v++++
       CTQ26220.1 571 TVILMFIMGYGISmDVEDLRFAVLDRDQTLSSQGWSQNLAGSRYFIEQAPLHSYDELDRRMRDGELAVAIEIPPNFGRDIARGTPVQIGVWVDG 664
                      34455555555555779**********9999999**********888*********************************************** PP

  ABC2_membrane_3 108 snlnsskailnalnsllqqlnasalvlqseatstsaninvestqleeelsnvasflvg.liliilifitasfiavsiveEkesrikelqlvsgv 200
                      + +n + +++ +++++  + ++++ + qs+ + ++  i++e++ ++++  ++   +v+ +i ++l++i+a+  a s+v+Eke + +  ++v++ 
       CTQ26220.1 665 AMPNRAETVRGYVQAMHLAWLQEMAGRQSSPQRDTSLISIETRYRYNPDVKSLPAIVPaVIPLLLMMIPAMLSALSVVREKELGSIINLYVTPT 758
                      **************9755555555557788888999999999999****9999999998999******************************** PP

  ABC2_membrane_3 201 splqywlskilgdflvyllqlllilll...afglgipfgnlglll.llfllfglayialgyllsslfknsetaqilifivilllsgffggl.fp 289
                      ++++++l+k l + +++++ ++l+++l   +fg  +  ++++l+l l  ll+  +++ lg+l+s+++k++ +a+  + i++l++   f g+  p
       CTQ26220.1 759 TRSEFLLGKQLPYIVLGMFNFFLLCALsvfVFG--VAHKGSFLTLtLAALLYVTIATGLGLLISTFMKSQIAAIFGTAIITLIPATQFSGMiDP 850
                      *********************999996555999..99998888888******************************999999877776666269 PP

  ABC2_membrane_3 290 ledlpsalkwifsiiPffapglgllrlitgd.plweillsliilalfavvylllal 344
                      + +l+++ +wi+ i P++++        + + ++++++ s+i l++ + ++l l++
       CTQ26220.1 851 VASLEGPGRWIGQIYPTSHFLTIARGTFSKAlNISDLWGSFIPLLIAVPLVLGLSV 906
                      ************************9999888899************9999999886 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   4.4   7.3e-23   5.4e-20      11     285 ..     561     911 ..     551     913 .. 0.85

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 7.3e-23
  ABC2_membrane_2  11 lvrsrrfllltvllpli..........dvalaylkdlgsslqseakaikeatlaleyveaasasdeaedtdqdlkv.................. 76 
                       vrs   ll tv+l++i          d+  a+l+ ++++++++  ++ + +  +   +  +  de+++ ++d++                   
       CTQ26220.1 561 PVRSTLALLGTVILMFImgygismdveDLRFAVLDRDQTLSSQGWSQNLAGSRYFIEQAPLHSYDELDRRMRDGELavaieippnfgrdiargt 654
                      4555554444444444459*******9999999999999999998888887777777777777799999999999999**************** PP

  ABC2_membrane_2  77 ..................................................................vstimavlipviaalfgadaiagEkerg 104
                                                                                        v++ + +l+ +i a+++a ++++Eke g
       CTQ26220.1 655 pvqigvwvdgampnraetvrgyvqamhlawlqemagrqsspqrdtslisietryrynpdvkslpaiVPAVIPLLLMMIPAMLSALSVVREKELG 748
                      ********************************************************************************************** PP

  ABC2_membrane_2 105 TlkllLskPvsRdeillgKfigglaigla..iavallatvllalaiilalgivlaledllllvvasvlllllvvflalglllSsvarssreaaa 196
                      ++  l+ +P +R+e llgK + ++++g++   ++++l ++++          v   +++l+l +a++l+++   +++lgll+S++++s+  a+ 
       CTQ26220.1 749 SIINLYVTPTTRSEFLLGKQLPYIVLGMFnfFLLCALSVFVF---------GVAHKGSFLTLTLAALLYVT--IATGLGLLISTFMKSQIAAIF 831
                      *****************************8555555555444.........34445678999999999999..569***********9999999 PP

  ABC2_membrane_2 197 lalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdlnalgstatnllilllllavllvlgyvlFkr 285
                         ++ ++ a  ++++  +va+l+ +          +  + pts++ t+ +  ++ +   ++   + +++ ll+    +l+l+  l+++
       CTQ26220.1 832 GTAIITLIPATQFSGMIDPVASLEGPGRW-------IGQIYPTSHFLTIARGTFSKAL--NISDLWGSFIPLLIAVPLVLGLSVLLLQK 911
                      99999999999999999999999997777.......89999*****999988888883..24566777776666555555555566666 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0012       0.9       2      23 ..      41      62 ..      40      82 .. 0.82
   2 !   23.7   0.0   4.8e-08   3.6e-05     231     287 ..     142     195 ..     110     206 .. 0.90
   3 !    9.7   0.0   0.00089      0.66       2      64 ..     305     364 ..     304     383 .. 0.77
   4 !   19.8   0.1   7.5e-07   0.00056     235     297 ..     406     466 ..     398     467 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0012
      AAA_21  2 nvliGpNgsGKSnLLdaldlla 23
                 +liGp g+GKS+LL ++ +++
  CTQ26220.1 41 VGLIGPDGVGKSSLLSLIAGAR 62
                58****************9875 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 4.8e-08
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr 287
                 ++pa +lS G+k+ l+l  al+ ++    ll++DEp +g +P   + ++el+++ ++
  CTQ26220.1 142 DRPAGKLSGGMKQKLGLCCALIHDP---QLLILDEPTTGVDPLSRAQFWELIDSIRQ 195
                 57999******************99...99**********************77655 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00089
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeiee 64 
                  ++ G Ng+GKS+ ++ l +l   ++ +eg+   ++  +++++i+ +++ ++ +++f +  e+
  CTQ26220.1 305 FGFLGSNGCGKSTTMKMLTGL---LPASEGEAWLFGQPVDPKDIATRQRVGYMSQAFSLYSEL 364
                 6789*****************...777777777777777777777777777777776666555 PP

  == domain 4  score: 19.8 bits;  conditional E-value: 7.5e-07
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTH 297
                 ++l+ G ++ l l++a++ ++     l++DEp +g +P +   +++l+ +++++  + ++++TH
  CTQ26220.1 406 ADLPLGIRQRLSLAVAVIHRP---EMLILDEPTSGVDPVARDMFWQLMvDLARQDQVTIFISTH 466
                 678888888889999999999...9*************99999*****555555********** PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.17   1.2e+02       5      41 ..     548     583 ..     544     597 .. 0.84
   2 !   64.2  10.6   1.4e-20   1.1e-17      54     209 ..     723     878 ..     692     879 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.17
  ABC2_membrane   5 allkreflqrwrdpslgllwrliqplllalvfgtvfg 41 
                       +re l   rdp+    + l+ +++l++++g+ ++
     CTQ26220.1 548 SYSRREALELRRDPVRS-TLALLGTVILMFIMGYGIS 583
                    56789999999999999.8899999999999998776 PP

  == domain 2  score: 64.2 bits;  conditional E-value: 1.4e-20
  ABC2_membrane  54 gllffsvlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelpvsllqalifllivyflvgldls.rfflflllllltalaasslg 148
                     ++  +++++  ++l+++++v+e+e g++  ++v+p+ ++s+++l+k l +++++++  +++ ++++f++g+  + +f+ + l++ll++ +a++lg
     CTQ26220.1 723 AVIPLLLMMIP-AMLSALSVVREKELGSIINLYVTPT-TRSEFLLGKQLPYIVLGMFNFFLLCALSVFVFGVAHKgSFLTLTLAALLYVTIATGLG 816
                    45555555555.*************************.*************************************999****************** PP

  ABC2_membrane 149 llisalapsfedasqla.slvllpllllsGffipidsmpkwlqwiaylnPltyavealrsnl 209
                    llis++++s+  a++ +  + l+p + +sG++ p+ s+++  +wi ++ P ++++ + r+++
     CTQ26220.1 817 LLISTFMKSQIAAIFGTaIITLIPATQFSGMIDPVASLEGPGRWIGQIYPTSHFLTIARGTF 878
                    *********999999883455679**************7789**************999875 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.03        23      25      43 ..      40      58 ..      27      60 .. 0.79
   2 !    8.1   0.0    0.0025       1.9      25      47 ..     304     326 ..     287     347 .. 0.83
   3 ?    6.0   0.0     0.011       8.4     324     364 ..     426     466 ..     409     467 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.03
      AAA_15 25 ltvliGkNnsGKSsileal 43
                +  liG+ ++GKSs+l ++
  CTQ26220.1 40 MVGLIGPDGVGKSSLLSLI 58
                6679************988 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0025
      AAA_15  25 ltvliGkNnsGKSsilealdlFl 47 
                 +  + G N++GKS+ +++l  +l
  CTQ26220.1 304 IFGFLGSNGCGKSTTMKMLTGLL 326
                 55689*************97665 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.011
      AAA_15 324 nvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 +  l+++EP     p a  ++++l+ +la++++  ++i+TH
  CTQ26220.1 426 PEMLILDEPTSGVDPVARDMFWQLMVDLARQDQVTIFISTH 466
                 44589999999999******************99******* PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   0.00014       0.1     100     128 ..      39      67 ..      20      74 .. 0.79
   2 !    7.3   0.0    0.0054         4      89     121 ..     291     324 ..     268     357 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
                  SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktg 128
                  +++ l+G+ GvGKS+L+  +++   ++ g
   CTQ26220.1  39 RMVGLIGPDGVGKSSLLSLIAGARIIEQG 67 
                  7888**************99998666655 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0054
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallp 121
                  ++++++ +++  ++  ++G+ G GKSt +++l++
   CTQ26220.1 291 AVDHVNFRIARgEIFGFLGSNGCGKSTTMKMLTG 324
                  5677777777669999***********9999987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0048       3.6      24      39 ..      40      55 ..      29      60 .. 0.81
   2 !   10.5   0.0   0.00053       0.4      10      45 ..     290     325 ..     283     333 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0048
      AAA_29 24 atlltGpsGsGKSTll 39
                ++ l+Gp G+GKS+ll
  CTQ26220.1 40 MVGLIGPDGVGKSSLL 55
                6779**********98 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00053
      AAA_29  10 gtfdghtieidlkgatlltGpsGsGKSTllDAiqal 45 
                    d+  ++i + +++ + G +G GKST +  ++ l
  CTQ26220.1 290 VAVDHVNFRIARGEIFGFLGSNGCGKSTTMKMLTGL 325
                 56677889999777999***********98544444 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7  10.4   8.7e-07   0.00065      56     167 ..     725     836 ..     707     844 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 8.7e-07
  ABC2_membrane_4  56 lllllplilgiiasylifrEeqndtlknLltiPvsrtklllaKlivllllsvllmlvtflitvlfallsgfvgfsvklvlellkkclelgllvf 149
                      + lll++i +++++ ++ rE++ + + nL + P +r ++ll+K +  ++l ++  +++++++v +  ++++ +f + +++ ll  ++ +gl+++
       CTQ26220.1 725 IPLLLMMIPAMLSALSVVREKELGSIINLYVTPTTRSEFLLGKQLPYIVLGMFNFFLLCALSVFVFGVAHKGSFLTLTLAALLYVTIATGLGLL 818
                      458999*************************************998888777766666666666666666666766777777777777777666 PP

  ABC2_membrane_4 150 favlpiialvllkksyvl 167
                      + +     +++++ + ++
       CTQ26220.1 819 ISTFMKSQIAAIFGTAII 836
                      655544444444444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   0.00019      0.14      25      63 ..      39      79 ..      26     265 .. 0.78
   2 ?    5.2   0.0     0.034        25      25      63 ..     303     342 ..     293     463 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00019
      AAA_16 25 elvllsGesGvGKsslvrell.ralekdg.giflrgkcdql 63
                ++v l+G+ GvGKssl+  ++  ++ ++g + +l g+ ++ 
  CTQ26220.1 39 RMVGLIGPDGVGKSSLLSLIAgARIIEQGnVMVLGGDMRDV 79
                8899*************999954666665477777777766 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.034
      AAA_16  25 elvllsGesGvGKsslvrellralekdg.giflrgkcdql 63 
                 e+  + G  G+GKs+ +++l   l +++   +l g+ ++ 
  CTQ26220.1 303 EIFGFLGSNGCGKSTTMKMLTGLLPASEgEAWLFGQPVDP 342
                 6667889**********99998777774133355555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00093       0.7       2      24 ..      41      63 ..      40      75 .. 0.86
   2 ?    4.7   0.0     0.042        32       3      21 ..     306     324 ..     304     358 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00093
                EEEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgeka 24
                v+++G   vGKS+L++ + g++ 
  CTQ26220.1 41 VGLIGPDGVGKSSLLSLIAGARI 63
                89***************999864 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.042
                 EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   3 aivGrpNvGKStLinaltg 21 
                 +++G    GKSt ++ ltg
  CTQ26220.1 306 GFLGSNGCGKSTTMKMLTG 324
                 799**************98 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.016        12      28      88 ..     143     190 ..     123     192 .. 0.74
   2 ?    5.8   0.0     0.022        17      51      88 ..     413     450 ..     401     452 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.016
     SbcCD_C  28 rssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                 r +g+lSGG kq+l   + +              ++++l++LDE   ++D+ s+a+  el+
  CTQ26220.1 143 RPAGKLSGGMKQKLGLCCAL-------------IHDPQLLILDEPTTGVDPLSRAQFWELI 190
                 66666677766666555544.............2458999999999999999999988886 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.022
     SbcCD_C  51 aalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                 ++ +s a +  +++++++LDE  s++D+  ++   +l+
  CTQ26220.1 413 RQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLM 450
                 55555544456899**************9998888776 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.15   1.1e+02      21      40 ..      40      59 ..      25      61 .. 0.84
   2 !   11.9   0.1   0.00032      0.24      12      40 ..     294     323 ..     284     328 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.15
      AAA_23 21 ltlItGpNGaGKTTildAik 40
                ++ ++Gp G GK+++l  i 
  CTQ26220.1 40 MVGLIGPDGVGKSSLLSLIA 59
                67789**********98876 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00032
      AAA_23  12 dqeidF...skgltlItGpNGaGKTTildAik 40 
                 +  ++F      ++ + G NG+GK+T +  ++
  CTQ26220.1 294 H--VNFriaRGEIFGFLGSNGCGKSTTMKMLT 323
                 3..455556668**************998877 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.065        48      24      42 ..      38      56 ..      29      60 .. 0.84
   2 ?   -0.6   0.0      0.99   7.4e+02     123     207 ..     128     214 ..     105     225 .. 0.65
   3 ?    3.0   0.0     0.081        60      29      42 ..     307     320 ..     288     330 .. 0.83
   4 ?    3.1   0.0     0.075        56     149     214 ..     416     480 ..     413     485 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.065
                SSEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlld 42
                +++  ++Gp G GKs+ll 
  CTQ26220.1 38 RRMVGLIGPDGVGKSSLLS 56
                567889**********986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.99
                 HHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SC CS
                 xxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadk 207
                 ++ell+s+g+ +        LSgG k+ +   L  A+  ++   l +lDe     D   ++++ el+++ +++   + + + +  +e+a++
  CTQ26220.1 128 INELLQSTGLAPFrdrpagKLSGGMKQKL--GLCCAL--IHDPQLLILDEPTTGVDPLSRAQFWELIDSIRQRQPAMSVLVATAYMEEAER 214
                 56666666666555555557899877633..333332..2344588999999999999999998888866655444444444555555544 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.081
                 EEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxx RF
       SMC_N  29 ivGpNGSGKsnlld 42 
                  +G+NG+GKs  + 
  CTQ26220.1 307 FLGSNGCGKSTTMK 320
                 57********8876 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.075
                 HHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 149 LlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtkv 214
                 L +A+  +++  + +lDe  +  D   +  + +l+     + Q+  i ++++++++a+++ +++  
  CTQ26220.1 416 LSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLARQDQVT-IFISTHFMNEAERCDRISLM 480
                 56778888888899**********************999999975.45677888888888888765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.038        28       6      24 ..      39      57 ..      37      85 .. 0.88
   2 ?   -2.3   0.0       6.6   4.9e+03      91     129 ..     162     205 ..     118     212 .. 0.61
   3 ?    7.0   0.1    0.0089       6.7      12      38 ..     309     341 ..     302     464 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.038
      AAA_22  6 gilvvtGesGtGKTtllrr 24
                +++ ++G+ G+GK+ ll  
  CTQ26220.1 39 RMVGLIGPDGVGKSSLLSL 57
                56779*********99876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.6
      AAA_22  91 v...ielliiDEaqh.lr..s.eealeeLrsllnlsrkgvqliLvG 129
                     ++lli+DE    ++  s ++ +e + s+    r++   +Lv 
  CTQ26220.1 162 LihdPQLLILDEPTTgVDplSrAQFWELIDSIRQ--RQPAMSVLVA 205
                 2445689999995554444443555555555555..5555555555 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0089
      AAA_22  12 GesGtGKTtllrrlleqldeeakaee......e 38 
                 G  G+GK+t++++l+  l++ +  ++       
  CTQ26220.1 309 GSNGCGKSTTMKMLTGLLPASEGEAWlfgqpvD 341
                 889***********9999876665556555550 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.091        68       3      19 ..      43      59 ..      41      81 .. 0.83
   2 ?    7.7   0.0    0.0059       4.4       3      19 ..     307     323 ..     305     365 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.091
  RNA_helicase  3 lyGpsgeGKStlakeLa 19
                  l Gp g+GKS+l   +a
    CTQ26220.1 43 LIGPDGVGKSSLLSLIA 59
                  78*********998865 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0059
  RNA_helicase   3 lyGpsgeGKStlakeLa 19 
                   + G++g+GKSt++k L+
    CTQ26220.1 307 FLGSNGCGKSTTMKMLT 323
                   679***********976 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.006       4.5       4      23 ..      43      62 ..      40      88 .. 0.81
   2 ?    3.3   0.0       0.1        75       5      44 ..     308     348 ..     306     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.006
                EE--SSSSHHHHHHHGGGGB CS
       AAA_5  4 LvGppGtgKselaerlaaal 23
                L+Gp G+gKs+l   +a a 
  CTQ26220.1 43 LIGPDGVGKSSLLSLIAGAR 62
                9************9998764 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.1
                 E--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH-- CS
       AAA_5   5 vGppGtgKselaerlaaal.nreveyvqltrdtteedlkgr 44 
                 +G  G+gKs+ ++ l  +l  +e e  ++ +   ++d+  r
  CTQ26220.1 308 LGSNGCGKSTTMKMLTGLLpASEGEAWLFGQPVDPKDIATR 348
                 799*************9997667777666666666666655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.15   1.1e+02       7      41 ..      23      57 ..      17      64 .. 0.82
   2 ?    7.6   0.0    0.0029       2.2      27      52 ..     307     332 ..     288     340 .. 0.87
   3 ?   -3.1   0.0       5.8   4.3e+03      12      56 ..     415     460 ..     413     474 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.15
  Mg_chelatase  7 GqeeakraleiaaaGgHnlllvGppGsGKtmlakr 41
                  G + a r + +a+  +  + l+Gp G GK+ l + 
    CTQ26220.1 23 GATIALRDISLAIPARRMVGLIGPDGVGKSSLLSL 57
                  55667788889999999999*********988765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0029
  Mg_chelatase  27 lvGppGsGKtmlakrlpsllpplsee 52 
                   ++G+ G+GK+   k l++llp+ + e
    CTQ26220.1 307 FLGSNGCGKSTTMKMLTGLLPASEGE 332
                   79*******************97755 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5.8
  Mg_chelatase  12 kraleiaaaGgHnlllvGppGsGKtmlakrl.psllpplseeeale 56 
                   +  l +a++ + ++l++  p sG   +a+ +  +l+ +l +++++ 
    CTQ26220.1 415 RLSLAVAVIHRPEMLILDEPTSGVDPVARDMfWQLMVDLARQDQVT 460
                   4567777777778999999999999888865257888888777665 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.18   1.4e+02      43      81 ..      36      71 ..      25      94 .. 0.74
   2 ?    8.6   0.0    0.0022       1.7      47      71 ..     304     328 ..     286     377 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.18
       Rad17 43 rkkriLLisGPsGCgkstvvkvLskelgiklrewlnpvs 81
                  +r++ + GP G gks  +   s + g +++e  n + 
  CTQ26220.1 36 PARRMVGLIGPDGVGKSSLL---SLIAGARIIEQGNVMV 71
                556888899********865...5556777777766665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0022
       Rad17  47 iLLisGPsGCgkstvvkvLskelgi 71 
                 i    G  GCgkst++k+L+  l  
  CTQ26220.1 304 IFGFLGSNGCGKSTTMKMLTGLLPA 328
                 5556799************977654 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.011       8.5       3      21 ..      43      61 ..      41      85 .. 0.85
   2 ?    3.5   0.2      0.12        87       3      19 ..     307     323 ..     305     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.011
                EESSTTSSHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavake 21
                l+Gp G+GK++l + +a  
  CTQ26220.1 43 LIGPDGVGKSSLLSLIAGA 61
                89************99975 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.12
                 EESSTTSSHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakava 19 
                 + G  G+GK++++k + 
  CTQ26220.1 307 FLGSNGCGKSTTMKMLT 323
                 689**********9875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.017        13      18      52 ..      38      72 ..      31      80 .. 0.80
   2 ?    4.1   0.0     0.046        34      23      46 ..     307     330 ..     296     346 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.017
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrvigl 52
                +r++ l Gp G GK+ +l+ ++ a   ++g+v++l
  CTQ26220.1 38 RRMVGLIGPDGVGKSSLLSLIAGARIIEQGNVMVL 72
                67999***************977766665566655 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.046
      AAA_30  23 ltGpAGtGKttalkalreaweaag 46 
                   G  G GK+t++k l+ ++ a++
  CTQ26220.1 307 FLGSNGCGKSTTMKMLTGLLPASE 330
                 56999***********99888774 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.018        13      27      58 ..      36      68 ..      13      75 .. 0.76
   2 ?    4.6   0.0     0.018        13      25      53 ..     298     326 ..     291     334 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.018
                S-SEEEEEEE-TTSSHHHHHHHH.HHHHHCTT- CS
        MeaB 27 GraqvvGltGvPGaGkstlveal.glelrrrGk 58
                   ++vGl G  G+Gks l++ + g++++++G+
  CTQ26220.1 36 PARRMVGLIGPDGVGKSSLLSLIaGARIIEQGN 68
                555789**************9873466777775 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.018
                 G-S-SEEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB  25 kaGraqvvGltGvPGaGkstlvealglel 53 
                 +  r +  G+ G+ G Gkst+++ l+  l
  CTQ26220.1 298 RIARGEIFGFLGSNGCGKSTTMKMLTGLL 326
                 55688899**************9998665 PP

>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00035      0.27      80     149 ..      67     142 ..      24     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
                 EEEEEE--B-SSSTC-TCEEEEEEEEEGG......GHHHHHHHHHHHHHH.......HS-CSSGGG-SHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR  80 gfnilvGGglgrthgakktsarlgfvpee......evlevveaivevyrd.......hgdrknrkkeRlkylverlGvekFre 149
                 g  +++GG +   h + +  ++++++p+       ++l+v e       +       +g  k+++  R+ +l++ +G++ Fr+
  CTQ26220.1  67 GNVMVLGGDMRDVHHRREVCPKIAWMPQGlgknlyHTLSVYE-------NvdffarlFGHDKAERELRINELLQSTGLAPFRD 142
                 778899***********************6666665555555.......444444469999999999**************96 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0032       2.4      30      88 ..      35      83 ..      12     137 .. 0.75
   2 ?   -0.0   0.0      0.73   5.5e+02      30      50 ..     299     319 ..     295     351 .. 0.70
   3 ?   -3.6   0.0       9.2   6.9e+03     114     149 ..     395     432 ..     366     436 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0032
      AAA_25 30 lpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrr 88
                +pa   + l+G+ g+GK+ l++ +a a          +  eqg+V+++ ++++  + rr
  CTQ26220.1 35 IPARRMVGLIGPDGVGKSSLLSLIAGARI--------I--EQGNVMVLGGDMRDVHHRR 83
                78889999************999887766........2..7899999999888843333 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.73
      AAA_25  30 lpagelallaGapgtGKttla 50 
                 +++ge+  + G  g+GK+t  
  CTQ26220.1 299 IARGEIFGFLGSNGCGKSTTM 319
                 5677888889*******9853 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 9.2
      AAA_25 114 lpLfakdrggtl.ltadvd.aleaaieevegvrlvviD 149
                  +L++ ++  ++ l+  ++ +l  a+  +++++++++D
  CTQ26220.1 395 FMLTEVEDALPAdLPLGIRqRLSLAVAVIHRPEMLILD 432
                 44444444444443333330344444445778888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (914 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 6381.92
//
Query:       CTQ26221.1  [L=355]
Description: putative HlyD family secretion protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-17   62.3   0.6    1.8e-11   44.7   0.0    2.6  3  HlyD_3           HlyD family secretion protein
      8e-13   48.1   9.0    4.1e-11   42.5   9.0    2.2  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
      1e-11   44.4   0.4      1e-11   44.4   0.4    2.7  3  Biotin_lipoyl_2  Biotin-lipoyl like
    0.00014   21.6   0.1     0.0037   17.1   0.1    2.4  2  Biotin_lipoyl    Biotin-requiring enzyme
     0.0062   16.4   0.2     0.0077   16.1   0.2    1.2  1  HlyD             HlyD membrane-fusion protein of T1SS
  ------ inclusion threshold ------
      0.018   15.2   0.0      0.064   13.5   0.0    1.9  2  Peptidase_M23    Peptidase family M23
      0.074   12.8   0.0        0.2   11.4   0.0    1.6  2  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
        0.3   10.4  20.7       0.51    9.6  20.7    1.3  1  DUF4407          Domain of unknown function (DUF4407)
       0.46    9.3  12.5       0.18   10.7   9.7    1.6  2  Spc7             Spc7 kinetochore protein
        1.1    9.4  19.0       0.35   11.1  13.1    2.1  2  FliJ             Flagellar FliJ protein
        8.6    3.7  18.2         12    3.3  18.2    1.1  1  DUF3584          Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.7e-05     0.027       2      50 ..      50     102 ..      49     122 .. 0.84
   2 ?   -2.2   0.0       4.1   6.7e+03      71      78 ..     172     179 ..     137     205 .. 0.50
   3 !   44.7   0.0   1.1e-14   1.8e-11       2      96 ..     214     318 ..     213     330 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-05
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiip....pdtllveakvpaadlgsi 50 
                 + + ++G++  + v+eg++v +g++l++       +++l++ a++ +a+++ +
  CTQ26221.1  50 IASKIAGRIDTILVKEGQFVHQGEVLARMDTrvlnEQRLEAAAQIKEAESAVL 102
                 67899*********************986555554999999999999988766 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.1
      HlyD_3  71 gkierisp 78 
                 ++++   +
  CTQ26221.1 172 AQVSAARA 179
                 22222222 PP

  == domain 3  score: 44.7 bits;  conditional E-value: 1.1e-14
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisp.......tvdaktg....aykv 89 
                 l+Ap+dG++++  +e+gev++ag ++l  ++ +++  ++++p +++g+++  g++++l ld  +d +++++i+ +++       tv++++     +++v
  CTQ26221.1 214 LKAPRDGRIQYRVAEPGEVLAAGGRVLNMVDLADVYMTFFLPTEQAGLLA-LGSEARLVLDAAPDLVIPANISFVASvaqftpkTVETSDErlklMFRV 311
                 89***********************************************6.**************************6655443333333336666666 PP

      HlyD_3  90 evslenp 96 
                 +++++++
  CTQ26221.1 312 KARIPPE 318
                 7666665 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   9.0   2.5e-14   4.1e-11      17     195 ..      45     298 ..      38     307 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 2.5e-14
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............................................... CS
    HlyD_D23  17 rrlarvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalk............................................... 68 
                  + ++++++++G+++++ v+ +g+ V++G+ La+++   l + + e  +  k                                               
  CTQ26221.1  45 ATEVDIASKIAGRIDTILVK-EGQFVHQGEVLARMDTRVLNEQRLEAAAQIKeaesavlaaralldqrqsemraseavvkqrqaeldstakrhvrsntl 142
                 4567899*************.*******************99999988888899999**9999*99999999999999999888888888888888888 PP

                 ..................XXXXXXXX..................XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  69 ..................akkklkkke.................lleaarerLrllgvseeqiaelektgkvq.ktvtvkapisGvVteknvreGqyvq 131
                                   +       +                  +eaar  + + +   e+ ++ e++  ++    ++kap++G ++ + +  G+++ 
  CTQ26221.1 143 sqrgavsaqqldddraaaE-------SaraalesakaqvsaaraAIEAARTSIIQAQTRVEAAQATERRILADiDDSELKAPRDGRIQYRVAEPGEVLA 234
                 7777776666665555540.......0455555666655655567777777777777666665555555433325689********************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 132 pgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyptvdpetRtv 195
                 +g +++++ dl +V++++ ++ +q++l++ g+++++ ++a p+  + +++++++ + + + +tv
  CTQ26221.1 235 AGGRVLNMVDLADVYMTFFLPTEQAGLLALGSEARLVLDAAPDLVIPANISFVASVAQFTPKTV 298
                 ******************************************************9998877776 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.4   6.4e-15     1e-11       3      50 .]      48      95 ..      44      95 .. 0.94
   2 ?   -1.7   0.4       1.7   2.8e+03      40      49 ..     165     174 ..     154     179 .. 0.72
   3 ?   -2.9   0.1       3.9   6.3e+03      29      39 ..     205     215 ..     205     216 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 6.4e-15
  Biotin_lipoyl_2  3 vsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50
                     v Ia++++Gr+ +++Vk+Gq V++G vLa+ D+r l+ +   a aq++
       CTQ26221.1 48 VDIASKIAGRIDTILVKEGQFVHQGEVLARMDTRVLNEQRLEAAAQIK 95
                     89***********************************99989999886 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.7
  Biotin_lipoyl_2  40 lalaqaeaql 49 
                      +al  a+aq+
       CTQ26221.1 165 AALESAKAQV 174
                      5566666664 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.9
  Biotin_lipoyl_2  29 vLaelDsralq 39 
                      +La +D+++l+
       CTQ26221.1 205 ILADIDDSELK 215
                      7999**99986 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   2.3e-06    0.0037      42      73 .]      47      78 ..      45      78 .. 0.94
   2 ?    1.9   0.0      0.12     2e+02      44      68 ..     213     237 ..     210     242 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.3e-06
                   EEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 42 emeieapkaGvvkeilvkeGdtvevgdllaki 73
                   e++i ++ aG++  ilvkeG+ v++g++la++
     CTQ26221.1 47 EVDIASKIAGRIDTILVKEGQFVHQGEVLARM 78
                   68999************************985 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.12
                    EEEBSSSEEEEEESSTTTEEE-TTC CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtvevgd 68 
                    e++ap +G++++ +++ G+ + +g 
     CTQ26221.1 213 ELKAPRDGRIQYRVAEPGEVLAAGG 237
                    899********99999999988875 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   4.7e-06    0.0077       7      78 ..      23     337 ..      12     339 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.7e-06
                 EEEEEE............................................................................................. CS
                 xxxxxx............................................................................................. RF
        HlyD   7 awaala............................................................................................. 12 
                 aw++l                                                                                              
  CTQ26221.1  23 AWWLLRppglpagfassngrieatevdiaskiagridtilvkegqfvhqgevlarmdtrvlneqrleaaaqikeaesavlaaralldqrqsemraseav 121
                 344444777777777777777777777777777777777777777777777777777777777777777778888888888888888888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  CTQ26221.1 122 vkqrqaeldstakrhvrsntlsqrgavsaqqldddraaaesaraalesakaqvsaaraaieaartsiiqaqtrveaaqaterriladiddselkaprdg 220
                 888888888888888888888888888888888888888888888888888888888888888888888888888888889999999999999999999 PP

                 ...................................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSB................EEEEEEEEEE CS
                 ...................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxx RF
        HlyD  13 ...................................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispd................rvpvrvvvek 60 
                                                    +++ + ++ g ++ +++dA p+ + +   ++V++++++                rv++r+  e 
  CTQ26221.1 221 riqyrvaepgevlaaggrvlnmvdladvymtfflpTEQAGLLALGSEARLVLDAAPDLVIPANISFVASVAQFtpktvetsderlklmfRVKARIPPEL 319
                 9999999999999999999999999999999999999999999**********************************************9999999999 PP

                 EETTEEEESSSS-TTEEE CS
                 xxxxxxxxxxxxxxxxxx RF
        HlyD  61 aqgpyyplriglkagalv 78 
                   ++   + +gl++ a v
  CTQ26221.1 320 LAQHLEYVKTGLPGMAYV 337
                 999999999999876655 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.9e-05     0.064      49      76 ..      55      82 ..      42     101 .. 0.79
   2 ?   -2.4   0.0       3.5   5.7e+03      17      29 ..     215     227 ..     209     254 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.9e-05
                   EEEESEESS-TTEEE-TTCEEEEEBSTS CS
  Peptidase_M23 49 yahlskisvkegqkVkaGqvIGtvgstg 76
                    + +++i vkegq+V +G+v++++ ++ 
     CTQ26221.1 55 AGRIDTILVKEGQFVHQGEVLARMDTRV 82
                   5678999*****************8665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.5
                    EESSSEEEEEEEE CS
  Peptidase_M23  17 lAaadGtVvfagk 29 
                    +A+ dG++ +   
     CTQ26221.1 215 KAPRDGRIQYRVA 227
                    6777777744433 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012       0.2      79     115 ..      54      90 ..      49      98 .. 0.86
   2 ?   -3.8   0.0       6.4     1e+04      37      49 ..     211     223 ..     203     224 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                 TTTTTEEES----SEE-SEEEEEEE-HHHHGGGSS-- CS
  PTS_EIIA_1  79 lkgegFellvkegdkVkagdklvevdleaikkagyst 115
                 + g+  ++lvkeg+ V++g+ l+++d   ++++ ++ 
  CTQ26221.1  54 IAGRIDTILVKEGQFVHQGEVLARMDTRVLNEQRLEA 90 
                 56667789**********************9998776 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.4
                 SSEEEES--EEEE CS
  PTS_EIIA_1  37 egkvvapvdGkve 49 
                 ++++ ap dG+++
  CTQ26221.1 211 DSELKAPRDGRIQ 223
                 5688999999885 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  20.7   0.00031      0.51     107     245 ..      73     207 ..      67     213 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00031
     DUF4407 107 eIdaelaeeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkak 205
                 e+ a+++++  +e++   +   +++++ + +++a +++ q+e++a ea +++ +ae+++ ++    + t   ++   +a++ +++ +aa+ + a+l++ 
  CTQ26221.1  73 EVLARMDTRVLNEQRLEAAAQIKEAESAVLAARALLDQRQSEMRASEAVVKQRQAELDSTAKRHVRSNTL-SQRGAVSAQQLDDDRAAAESARAALESA 170
                 55555555544444333333334588999999****************************9998865544.3444577777777777777777776666 PP

     DUF4407 206 ldatarlaalraelaeleaerakeraasqaaaaaddGlla 245
                    +a+++a+ra ++ +++ +++++++ +aa+a  + +la
  CTQ26221.1 171 ---KAQVSAARAAIEAARTSIIQAQTRVEAAQATERRILA 207
                 ...7777777777777777777777777777766666555 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.74   1.2e+03     239     257 ..      83     101 ..      65     107 .. 0.76
   2 ?   10.7   9.7   0.00011      0.18     144     244 ..     108     203 ..     100     218 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.74
        Spc7 239 lkeqkseleeeiaeaervl 257
                 l+eq+ e+ ++i+eae+ +
  CTQ26221.1  83 LNEQRLEAAAQIKEAESAV 101
                 6788888888888888765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00011
        Spc7 144 leenlegleedkelLekqeeeldellpeleeekaeleeeleklqe..aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelk 240
                 l+++ +++++ +++++++++eld+  ++ ++  +  ++ + + q+    +  +++ ++ Le+++ +++++ a ie+ ++ + + q+++e+ +       
  CTQ26221.1 108 LDQRQSEMRASEAVVKQRQAELDSTAKRHVRSNTLSQRGAVSAQQldDDRAAAESARAALESAKAQVSAARAAIEAARTSIIQAQTRVEAAQ------- 199
                 7788999*****************99999888777777777777733223333455666666666666666666666666666666655544....... PP

        Spc7 241 eqks 244
                 +  +
  CTQ26221.1 200 ATER 203
                 4444 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   7.2      0.74   1.2e+03      44      88 ..      91     135 ..      69     145 .. 0.51
   2 ?   11.1  13.1   0.00021      0.35       3      94 ..     111     200 ..     109     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.74
        FliJ  44 aaelrnyqafisaldeaiaqqkqelaqaekqvekareewqearqe 88 
                 aa+++  ++   a +  ++q ++e   +e++v+++++e+ +  ++
  CTQ26221.1  91 AAQIKEAESAVLAARALLDQRQSEMRASEAVVKQRQAELDSTAKR 135
                 334444444444444444444444455555555555444444444 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00021
        FliJ   3 aareLaeaqrelqqaeekleeleqyrqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqvekareewqearqerkklek 94 
                  + e+ + ++ ++q +++l++  + + +  + ls+++ ++sa++l   +a  ++ + a++++k +++ a++++e+ar   ++a+ ++++ + 
  CTQ26221.1 111 RQSEMRASEAVVKQRQAELDSTAKRHVRS-NTLSQRG-AVSAQQLDDDRAAAESARAALESAKAQVSAARAAIEAARTSIIQAQTRVEAAQA 200
                 55667777777777777777765555544.6666666.9*************************************************9875 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  18.2    0.0073        12     403     525 ..      80     201 ..      57     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0073
     DUF3584 403 leaireekdrlkaaieealealesqlrkqleaqkeelneeekelesrlselklrldsatateEeleqieeadealekaqeelekaeaevealqaeeeql 501
                 + ++ e++ +  a+i+ea +a+ ++ r+ l++ ++e++  e+ +++r +el+  ++    ++ ++++ + + ++l+  ++++e+a+a+ e+++a+  ++
  CTQ26221.1  80 TRVLNEQRLEAAAQIKEAESAVLAA-RALLDQRQSEMRASEAVVKQRQAELDSTAKRHVRSNTLSQRGAVSAQQLDDDRAAAESARAALESAKAQVSAA 177
                 4467777878788888888887765.5688999999999999999999999999999999999999999999999999999999999999999999999 PP

     DUF3584 502 rkkrdeadealqkaerrleqlrqa 525
                 r++ + a +   +a+ r+e  ++ 
  CTQ26221.1 178 RAAIEAARTSIIQAQTRVEAAQAT 201
                 999999999999999999877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1412  (0.0787551); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 2526.46
//
Query:       CTQ26222.1  [L=335]
Description: Tryptophan--tRNA ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-51  175.0   0.0    2.4e-51  174.8   0.0    1.0  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.8   0.0   1.3e-55   2.4e-51       4     292 ..       3     286 ..       1     287 [. 0.95

  Alignments for each domain:
  == domain 1  score: 174.8 bits;  conditional E-value: 1.3e-55
                   S--EEEEEEETSSS-BGG.GHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHHHTTHHH CS
  tRNA-synt_1b   4 rplrvysGidPTgklHlG.ylvplkklvelqkaghevffliaDlhAiigdpskaeerklrkreevlenaikaqlakgldpekaevvlqsewlehlel 99 
                   +p ++++G +PTg+lHlG y+++l+++v+lq ++h+ f+liaDl +++++ s  +++k+ ++  ++++    +la+g+d   ++++lqs+ ++  el
    CTQ26222.1   3 HPQTILTGDRPTGQLHLGhYVGSLRQRVALQ-HNHQQFILIADLQGLTDNGS--NPQKISHHILEVMAD---YLAVGIDTRLTTICLQSALPALAEL 93 
                   67899**************************.********************..9**************...************************* PP

                   HHHHHHHHTTCBHHHHHHHHHCCHHCSS.S..C--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHHHHHHHHHHH...STTSS-EEEEET. CS
  tRNA-synt_1b 100 aellrdlgklgslnrmlqfksvkkrlee.g..egislgeftYplLqaaDilllkadlvpgGsDQkqnielgrdlarrfnkk...evfkkpegltvp. 189
                     l ++++++ +++r +  k    ++++ g  +++++g + Yp+ qaaDi ++ka+lvp+G+DQ   ie + +++ ++n+     v++ +++l+ + 
    CTQ26222.1  94 SALYMNIVTVARVERNPTVKN---EIAQkGfaRSLPVGFLAYPISQAADITAFKAELVPVGDDQLPMIEQTNEIVHKMNSLtgePVLRHCKALLSEv 187
                   *********888888888888...3333224469***********************************************99999********998 PP

                   .-BBSTTSSSBTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTCSHHHHHHHHHTHHHCHHHHHHHHCCSEEESSHHHHHHHHHCCCCHHHHHHHHHH CS
  tRNA-synt_1b 190 .lltgldGekKmSKSagnsaIfLddekesvkkkiqkavtdsdeevekllklktelsnelierleavsgkkpkreaeellaeevtklvhggdlkkala 285
                     l+g+dG  KmSKS gn ++ L+  +e++   ++ ++td+   ++   ++ +  +  ++++l+a+++ k   ++ e++a + ++ ++++++k++l+
    CTQ26222.1 188 sRLPGVDGNAKMSKSLGN-TLTLSATEEEIHHAVSAMYTDPTH-LRVSDPGHVDGNV-VFTYLDAFHSDKA--RVAEMKAHYQRGGLGDRQCKNELE 279
                   89****************.***********************9.99999********.**********999..99********************** PP

                   HHHHHHH CS
  tRNA-synt_1b 286 ealnell 292
                     l++ll
    CTQ26222.1 280 TCLQTLL 286
                   9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2642.61
//
Query:       CTQ26223.1  [L=327]
Description: putative LACI-type transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-51  173.6   0.7    6.8e-51  173.3   0.7    1.0  1  Peripla_BP_4  Periplasmic binding protein domain
    0.00031   20.3   0.0    0.00047   19.7   0.0    1.4  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.3   0.7   7.6e-55   6.8e-51       6     257 ..      36     287 ..      31     288 .. 0.96

  Alignments for each domain:
  == domain 1  score: 173.3 bits;  conditional E-value: 7.6e-55
                   S-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC CS
  Peripla_BP_4   6 kdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgf 102
                   k  + p+f+ ++eg+ +a ke + +   vg++++da +Qv++ied+ia++vd+i + p+d++ l+p++kka++aGI+V +  s+  + +    +  +
    CTQ26223.1  36 KVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESP-GQPSANWDVEII 131
                   566778**********************************************************************99999999.88888899999* PP

                   -HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH.-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSCCHHHC CS
  Peripla_BP_4 103 dneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke.ypgikivaevaganwdaekaqqalealltanp.ldgilaandgmaeg 197
                   dne++++   e +a+ +ggk g +vi+ Gs++ p+++++++   k+ ke yp++  v+   ++ ++ +++++ + +l++ +p l++++++++++ +g
    CTQ26223.1 132 DNEKFAAEYVEHMAKRMGGK-GGYVIYVGSLTVPQHNLWADLLVKYQKEhYPDMHEVTRRMPVAESVDDSRRTTLDLMKTYPdLKAVVSFGSNGPIG 227
                   ********************.****************************9********99999****************8855************** PP

                   HHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 198 alealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGk 257
                   a +a++++ +++kv+v+g+  +++a  +ik+G+i+  ++ dp   gya + +a  ll+Gk
    CTQ26223.1 228 AGRAVKEKRAKNKVAVYGMMIPSQAASLIKSGDITEGITYDPATAGYALAAVASTLLNGK 287
                   ***********************************************************9 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   5.2e-08   0.00047       7     127 ..      34     163 ..      28     251 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.2e-08
                   EES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-S..SHHHHHHHHHHHHHTT-SEEEEE-S-GG.HHHHHHHHHHT-EEEEESS--B-T.TTS-EEE CS
  Peripla_BP_1   7 vlpqldePffldlvkgitkaakehgvdvlllaag..eeedlakaidllkakgidgliiatsdts.fdditakaesgipvialedaidap.dgvPcvi 99 
                   + + +  P+f  + +g+ +a+ke++ +   +     + +++ k i+ l a+++d++ i   d +  + + +ka+ +  v++ ++   +p    ++ i
    CTQ26223.1  34 ISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSstDAPQQVKIIEDLIARKVDAITIVPNDANvLEPVFKKARDAGIVVLTNESPGQPsANWDVEI 130
                   5566778********************999865400445666*****************7777769999999999666666666656666667777* PP

                   E-HHHHHHHHHHHHHHHHHHHT...G..EEEEE CS
  Peripla_BP_1 100 pddtqageestqkLiaeghkrp...i..alleg 127
                    d+ + ++e  +++ +++ +++   i    l  
    CTQ26223.1 131 IDNEKFAAEYVEHMAKRMGGKGgyvIyvGSLTV 163
                   ******************999988533333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2471.67
//
Query:       CTQ26224.1  [L=494]
Description: Ribose import ATP-binding protein RbsA 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-53  181.3   0.0    2.7e-27   96.0   0.0    2.2  2  ABC_tran     ABC transporter
    5.5e-09   36.3   0.1     0.0035   17.2   0.0    2.5  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00013   21.5   0.6       0.49    9.8   0.0    3.4  3  SMC_N        RecF/RecN/SMC N terminal domain
     0.0004   20.1   0.0       0.01   15.6   0.0    2.4  2  AAA_29       P-loop containing region of AAA domain
     0.0012   18.7   0.0     0.0018   18.1   0.0    1.3  1  AAA_15       AAA ATPase domain
     0.0018   18.8   0.1     0.0039   17.7   0.1    1.5  1  AAA_23       AAA domain
     0.0058   16.6   0.1      0.034   14.1   0.0    2.2  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.011   15.3   0.4       0.17   11.4   0.0    2.9  3  AAA_25       AAA domain
      0.029   14.4   0.0          6    6.9   0.0    2.4  2  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
       0.05   12.9   0.1       0.19   11.0   0.1    1.9  2  Zeta_toxin   Zeta toxin
       0.05   13.5   0.0       0.21   11.5   0.0    1.9  2  Rad17        Rad17 P-loop domain
        0.1   12.6   0.0         12    6.0   0.0    2.6  2  DUF2866      Protein of unknown function (DUF2866)
       0.21   10.3   0.6         12    4.6   0.1    2.6  3  ABC_ATPase   Predicted ATPase of the ABC class
       0.85    9.9   4.3         11    6.2   0.9    3.6  3  AAA_22       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   2.1e-30   2.7e-27       1     137 []      20     169 ..      20     169 .. 0.95
   2 !   83.4   0.0   1.6e-26     2e-23       2     136 ..     270     424 ..     269     425 .. 0.88

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 2.1e-30
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH...............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlke.qeleslrkeigvlpqepqlfpeltvren...............esd 82 
                 l+++s+++ +ge++ + G+nG+GKStL+k+++g ++p+eG   +  gk + + ++  s+ + i+v+ q+ +lfp+l+v en               e +
  CTQ26224.1  20 LNDISIDFMPGEVHCLAGQNGCGKSTLIKIISGVYRPDEGAAMMLgGKTWPKlTPAASVAHGIQVIYQDLSLFPNLSVWENiainhyhrgvlvrrsELR 118
                 799**************************************9888688888899**************************************9998888 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + +e+a+++++ +   d  v    +sLS    q va++ral+++++l+++DEpta
  CTQ26224.1 119 RSAEQAMRSINVSLPLDAAV----ESLSIARCQLVAICRALAQDARLIIMDEPTA 169
                 88*********999999999....*****************************97 PP

  == domain 2  score: 83.4 bits;  conditional E-value: 1.6e-26
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................. 79 
                 +nvslk+++ge+v ivG  GaG + L+  l g+++p++Geil++g++++   +    r+ ig+++++     l    ++++n                 
  CTQ26224.1 270 HNVSLKVEAGEVVSIVGLLGAGRTELCLSLFGMTRPDSGEILINGQPVRLrSNQDAIRHGIGYVSEDrmsRGLVMSQSIENNiistvfhkvkgacglls 368
                 89**********************************************99789999***********665555555556666***************88 PP

                 ..HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ..esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                   ++++ ++++++ l +k  +dt++    ++LSgG  qrv++a+ l+  pkll+lD pt
  CTQ26224.1 369 dsKAQQLVARMVNALTIKA-PDTHL--PVNTLSGGNAQRVSIAKWLAISPKLLILDSPT 424
                 5444444888888888887.66666..46*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.7e-06    0.0035       2      24 ..      33      55 ..      32      82 .. 0.84
   2 !   16.5   0.1   4.3e-06    0.0055     231     297 ..     133     198 ..     102     204 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.7e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllar 24
                 +l G Ng+GKS+L+++++++ r
  CTQ26224.1 33 HCLAGQNGCGKSTLIKIISGVYR 55
                5799**************99865 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 4.3e-06
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 +l+a+ +S    r+  l++++ ++++ ++l++ DEp ++L ++ ++ ll ++++l+++g+ +++++H
  CTQ26224.1 133 PLDAAVESLSIARC-QLVAICRALAQDARLIIMDEPTASLTHQEVEGLLHVVRQLRERGICIVFVSH 198
                 56667777778899.**************************************************** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00038      0.49      19      44 ..      24      50 ..      12      55 .. 0.78
   2 !    6.9   0.1     0.003       3.9     156     211 ..     156     212 ..     140     219 .. 0.75
   3 ?    0.8   0.0      0.21   2.7e+02     127     153 ..     387     413 ..     268     452 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00038
                EEETTS.SEEEEEESTTSSHHHHHHHH CS
                xxxxxx.xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 19 ilpfsk.sftaivGpNGSGKsnlldAi 44
                +++f + ++ ++ G+NG+GKs l+  i
  CTQ26224.1 24 SIDFMPgEVHCLAGQNGCGKSTLIKII 50
                55555425889***********99866 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.003
                 CS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 156 vkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgv 211
                 ++ a l ++De  a L +++v+ + +++++ +++   ++ +s+r e +  ++  + v
  CTQ26224.1 156 AQDARLIIMDEPTASLTHQEVEGLLHVVRQLRERgICIVFVSHRLEEVMAVSDRISV 212
                 4677899************************99944455588887666665555555 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.21
                 HHCTT-STTCS-HHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 127 lesagiskelLSgGektLvalaLlfAi 153
                  +++++  ++LSgG+ + v++a  +Ai
  CTQ26224.1 387 APDTHLPVNTLSGGNAQRVSIAKWLAI 413
                 223333334777777777777766665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.8e-06      0.01      16      40 ..      24      48 ..      18      61 .. 0.80
   2 ?    1.6   0.0      0.18   2.3e+02      10      36 ..     267     293 ..     258     296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.8e-06
      AAA_29 16 tieidlkgatlltGpsGsGKSTllD 40
                +i++ + +++ l+G++G GKSTl+ 
  CTQ26224.1 24 SIDFMPGEVHCLAGQNGCGKSTLIK 48
                5778777899*************95 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.18
      AAA_29  10 gtfdghtieidlkgatlltGpsGsGKS 36 
                 g++++ +++++  +++ ++G  G+G +
  CTQ26224.1 267 GEYHNVSLKVEAGEVVSIVGLLGAGRT 293
                 88999999**9777***********76 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.4e-06    0.0018      12      44 ..      18      51 ..      17     107 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.4e-06
      AAA_15 12 Rslkdveidlsee.ltvliGkNnsGKSsileald 44
                R+l d++id+ +  + +l G N++GKS++++++ 
  CTQ26224.1 18 RALNDISIDFMPGeVHCLAGQNGCGKSTLIKIIS 51
                8999******9998*****************995 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1     3e-06    0.0039       8      39 ..      18      50 ..      13      53 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3e-06
      AAA_23  8 rsfrdqeidFsk.gltlItGpNGaGKTTildAi 39
                r ++d +idF +  + ++ G+NG+GK+T++  i
  CTQ26224.1 18 RALNDISIDFMPgEVHCLAGQNGCGKSTLIKII 50
                5667889***663699*************9877 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.6e-05     0.034      97     121 ..      28      52 ..       8      60 .. 0.78
   2 ?   -1.5   0.0       1.6     2e+03      92     121 ..     271     301 ..     251     311 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
                  CTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallp 121
                  + +++ +l+Gq G GKStLi+ + +
   CTQ26224.1  28 MPGEVHCLAGQNGCGKSTLIKIISG 52 
                  45699***************98865 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.6
                  HHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  92 elkellkd.ktsvlvGqSGvGKStLinallp 121
                  +++ +++  +++ +vG  G+G++ L  +l +
   CTQ26224.1 271 NVSLKVEAgEVVSIVGLLGAGRTELCLSLFG 301
                  44444444499999*******9999877766 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014      0.17      21      50 ..      19      47 ..       5      80 .. 0.86
   2 ?   -0.1   0.0      0.45   5.7e+02      90     132 ..     148     178 ..     103     196 .. 0.60
   3 ?   -1.8   0.0       1.5   1.9e+03      30      53 ..     276     299 ..     270     301 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
      AAA_25 21 prrwlvkgllpagelallaGapgtGKttla 50
                 ++++  +++p ge++ laG+ g+GK+tl 
  CTQ26224.1 19 ALNDISIDFMP-GEVHCLAGQNGCGKSTLI 47
                56666668886.****************95 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.45
      AAA_25  90 lravgealrddarllvldlagveslpLfakdrggtl.ltadvda 132
                 l a+++al++darl ++d ++             +  + ++v+ 
  CTQ26224.1 148 LVAICRALAQDARLIIMDEPT-------------ASlTHQEVEG 178
                 334444444444444444333.............2223344444 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.5
      AAA_25  30 lpagelallaGapgtGKttlaldl 53 
                 + age++ ++G  g+G t l+l+l
  CTQ26224.1 276 VEAGEVVSIVGLLGAGRTELCLSL 299
                 5789****************9997 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0047         6      18      39 ..      24      50 ..       7      55 .. 0.72
   2 ?    4.8   0.0      0.02        26      17      38 ..     277     298 ..     263     304 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0047
                H.....TEEEEEEESTTSSHHHHHHHH CS
        TsaE 18 l.....gdvilLeGdLGaGKTtlvrgl 39
                      g+v +L G+ G+GK+tl++ +
  CTQ26224.1 24 SidfmpGEVHCLAGQNGCGKSTLIKII 50
                2344568899**************976 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.02
                 CHTEEEEEEESTTSSHHHHHHH CS
        TsaE  17 algdvilLeGdLGaGKTtlvrg 38 
                 ++g+v+ + G LGaG T l+ +
  CTQ26224.1 277 EAGEVVSIVGLLGAGRTELCLS 298
                 23889************99865 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00015      0.19      20      41 ..      34      55 ..      29      69 .. 0.83
   2 ?   -2.0   0.0       1.5   1.9e+03      18      35 ..     281     298 ..     271     318 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
  Zeta_toxin 20 llgGqpGAGKselaellkdele 41
                 l+Gq G+GKs+l++ +    +
  CTQ26224.1 34 CLAGQNGCGKSTLIKIISGVYR 55
                69************99877665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.5
  Zeta_toxin  18 lillgGqpGAGKselael 35 
                 ++ ++G  GAG +el   
  CTQ26224.1 281 VVSIVGLLGAGRTELCLS 298
                 67789999*****99765 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00017      0.21      31      68 ..      16      53 ..       8      58 .. 0.77
   2 ?   -1.3   0.0       1.4   1.8e+03     126     171 ..     152     196 ..      99     206 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
       Rad17 31 vkewlkadvLesrkkriLLisGPsGCgkstvvkvLske 68
                 +++l+  +++  + ++  ++G  GCgkst +k++s  
  CTQ26224.1 16 ANRALNDISIDFMPGEVHCLAGQNGCGKSTLIKIISGV 53
                55666666677777778899**************9965 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.4
       Rad17 126 GddlrtdkklilvedlP.nkfyrdsdalrevirkylrssealplilv 171
                    l  d +li++++   +  +++++ l +v+r+    + +  +++v
  CTQ26224.1 152 CRALAQDARLIIMDEPTaSLTHQEVEGLLHVVRQLRERGIC--IVFV 196
                 45667788888888855567788889999999987665555..6665 PP

>> DUF2866  Protein of unknown function (DUF2866)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.046        59      29      56 ..     335     362 ..     332     369 .. 0.90
   2 ?    6.0   0.0    0.0096        12       7      50 ..     452     492 ..     450     494 .] 0.89

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.046
     DUF2866  29 dgriaRrvvaaevTeaevaeairshveG 56 
                 + r++R +v  ++ e+++  ++ ++v+G
  CTQ26224.1 335 EDRMSRGLVMSQSIENNIISTVFHKVKG 362
                 56899**********************9 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0096
     DUF2866   7 vSepiqqPwGrgyRlVEWtikedgriaRrvvaaevTeaevaeai 50 
                 + ++i++ w ++ R+      ++g+++   ++  +T++++ae +
  CTQ26224.1 452 ICDEIEEAWYQSHRILV---MKQGELTHSFLPDSSTQQQIAEVV 492
                 5679999999****974...489*******************98 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.023        30     243     270 ..      29      55 ..       3      92 .. 0.81
   2 ?    4.6   0.1    0.0091        12     355     412 ..     161     214 ..     147     221 .. 0.87
   3 ?   -3.1   0.0         2   2.5e+03     380     413 ..     439     471 ..     435     475 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.023
                 -SSEEEEEE-TTSSHHHHHHHHHHCCSE CS
  ABC_ATPase 243 pkGvtlIvGggfhGKsTLLeAlekGvyn 270
                 p  v  ++G +  GKsTL++ + +Gvy 
  CTQ26224.1  29 PGEVHCLAGQNGCGKSTLIKII-SGVYR 55 
                 5558999************966.68885 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0091
                 HH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEE CS
  ABC_ATPase 355 lmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilme 412
                 l+i De  ++l+   ++ ++ l++ vr+l ++ g+ ++ v+  +++ ++v+d++ +++
  CTQ26224.1 161 LIIMDEPTASLT---HQEVEGLLHVVRQL-RERGICIVFVSHRLEEVMAVSDRISVLK 214
                 677788888888...4458999*******.889********************98876 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2
                 HHHHHHHH--EEEEEESS-GCCTTT-SEEEEEET CS
  ABC_ATPase 380 vrelykklgvstilvvggsgdyldvAdtvilmee 413
                 + +  + +g+ ++++   +++   +++++++m++
  CTQ26224.1 439 ISD-LAAHGIAVLMICDEIEEAWYQSHRILVMKQ 471
                 444.4899*************999******9986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.9    0.0089        11       9      38 ..      34      80 ..      29     201 .. 0.53
   2 ?    0.9   0.0       0.4   5.2e+02       7      26 ..     281     300 ..     276     322 .. 0.86
   3 ?   -1.5   0.0       2.3   2.9e+03      81     102 ..     437     458 ..     417     469 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0089
      AAA_22  9 vvtGesGtGKTtllrrlleqldeeakaee.................e 38
                ++ G+ G+GK+tl++ +   +  ++ a++                 +
  CTQ26224.1 34 CLAGQNGCGKSTLIKIISGVYRPDEGAAMmlggktwpkltpaasvaH 80
                67899********9977666655555555556666655555555552 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.4
      AAA_22   7 ilvvtGesGtGKTtllrrll 26 
                 ++ ++G  G+G+T l+  l+
  CTQ26224.1 281 VVSIVGLLGAGRTELCLSLF 300
                 67899**********98876 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.3
      AAA_22  81 aleqalraravielliiDEaqh 102
                 ++   l a++  +l+i DE++ 
  CTQ26224.1 437 HIISDLAAHGIAVLMICDEIEE 458
                 4444444444458999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3682.79
//
Query:       CTQ26225.1  [L=323]
Description: Ribose high-affinity ABC transporter permease component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-39  136.3  40.1    1.4e-39  135.9  40.1    1.2  1  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
        4.7    7.7   9.7        4.5    7.8   4.6    3.5  2  DUF2583       Protein of unknown function (DUF2583)


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9  40.1   1.6e-43   1.4e-39       5     266 ..      39     307 ..      35     309 .. 0.90

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 1.6e-43
  BPD_transp_2   5 lltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvgltll 101
                   l++  a l+i+A Gl +v  iaG+i+++  ++ +++ y + ++l+ ++ ++++a+++a ++g+++gl+++llv rl+v+++iit+ +l +++gl+l+
    CTQ26225.1  39 LANNYAMLTILACGLFVVL-IAGGIDISFPAMTIIAQYGMVVMLQKVGGNFAVAFVLAGGIGVLLGLVNALLVNRLRVPSIIITISTLNIFYGLLLW 134
                   6777899************.****************99988888888888**********************************************5 PP

  BPD_transp_2 102 lltgitsgvkgqssvkellgfagallsflsaviv.....llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAgla 193
                   l +g +   + +   k+++ f+++ +             l+++++vl+  +++++t +Gr+++a+g+n+e a  +G++v r++l+++   g+++g a
    CTQ26225.1 135 LSKGVWLYDFPPWFEKGVMLFKYTDADGYDY--GlglplLTMIVVVLLTAFIMNFTTVGRKIYAMGGNRESASRVGFSVLRLQLFVYGYMGLMSGAA 229
                   5555555555444455555555444333332..145799********************************************************** PP

  BPD_transp_2 194 GallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallil 266
                   G+++a+   ++ p+  +g++++++aavvlGg+      g+l gt++G ++++v+++ +l+llg+++ ++ +++ga++++
    CTQ26225.1 230 GVVQAWTVMTVAPDSLLGYELTVLAAVVLGGTsliggrGTLTGTLLGVILLAVMQN-GLNLLGVSSYWQTLITGAIIVV 307
                   ********************************************************.*******************997 PP

>> DUF2583  Protein of unknown function (DUF2583)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.18   1.6e+03       6      52 ..       9      55 ..       4      67 .. 0.60
   2 ?    7.8   4.6    0.0005       4.5      23      59 ..     102     136 ..      65     139 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.18
     DUF2583  6 alllGnvlmglGlllmvaslaysvlnqlpelelpellaeaallgifi 52
                 + lG  +++l lll   s  +    +l++l     + ++   g+f+
  CTQ26225.1  9 EFWLGMFIIALCLLLGWRSEEFFTFGNLYDLANNYAMLTILACGLFV 55
                45566666666666666666666666666666555555555555554 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0005
     DUF2583  23 aslaysvlnqlpelelpellaeaallgifiGallWla 59 
                  +l+ ++   + +l +p ++ +++ l if G llWl+
  CTQ26225.1 102 LGLVNAL--LVNRLRVPSIIITISTLNIFYGLLLWLS 136
                 3333333..35689*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2455.40
//
Query:       CTQ26226.1  [L=328]
Description: Simple sugar transport system permease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-38  132.9  39.8    1.2e-38  132.9  39.8    1.4  2  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2      0.17   3.1e+03      58      69 ..      25      36 ..      14      45 .. 0.48
   2 !  132.9  39.8   6.5e-43   1.2e-38       2     267 ..      48     315 ..      47     316 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.17
  BPD_transp_2 58 allvallvgaav 69
                  +ll+ +++++ +
    CTQ26226.1 25 GLLLLMVIAFSI 36
                  222223333222 PP

  == domain 2  score: 132.9 bits;  conditional E-value: 6.5e-43
  BPD_transp_2   2 ilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl...lllallvallvgaavglllgllvlrlkvdeliitllllsvl 95 
                   +++++++  +l+i+Al++a+++ + G+inl++ + +  ++ v+a++++++++     l++ll++ ++++++gl++g+l++  +v ++++tl+++++l
    CTQ26226.1  48 FQSIASQMPVLGILALAMAMTM-LCGGINLSIIATANACSLVMAWVATSYPPGgatALATLLAGGGAAMIIGLCNGILIAGIRVSPILATLGMMTLL 143
                   578999****************.****************************9999999*************************************** PP

  BPD_transp_2  96 vgltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAgl 192
                    g++      it+g++  + ++++l  + a  +f+     +l++++++ +++ll ++++Gra++ +g+ne+a +++Gin++rv ++++vis++l ++
    CTQ26226.1 144 KGINI----LITGGSAIANYPQWVLWLNHAQ-WFGIPLPMWLFAVVAAGLWVLLEKSPLGRAIMLIGSNERATHYSGINTRRVLMWVYVISALLCAV 235
                   *****....4455555555555554444444.33333344778888999************************************************ PP

  BPD_transp_2 193 aGallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilv 267
                   a++l+   l+s++++ g  + + +i+a+vlGg+      g+++g v++ +++ +++s + ++lgi++ l+++l g+ll+++
    CTQ26226.1 236 AAFLMMSKLNSAKASYGESYLLVSILAAVLGGVnpdggsGRIVGMVLALFLLQIIES-GFNILGISPYLTMALWGVLLLCF 315
                   *********************************************************.********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1070  (0.0596798); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2293.67
//
Query:       CTQ26227.1  [L=260]
Description: Ribosyldihydronicotinamide dehydrogenase (quinone) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-56  190.9   0.0    2.2e-56  190.7   0.0    1.0  1  Flavodoxin_2  Flavodoxin-like fold
    2.6e-14   53.3   0.0    4.5e-14   52.5   0.0    1.3  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.7   0.0   2.5e-60   2.2e-56       1     193 [.       1     215 [.       1     219 [. 0.90

  Alignments for each domain:
  == domain 1  score: 190.7 bits;  conditional E-value: 2.5e-60
                   -EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCC.T-----CCCCHC.............CHHHHTT.C.HHHHHHHHHHHHCSSEE CS
  Flavodoxin_2   1 mkiLiinahprpeksfssalaqafvealekagphevtvrdLyad.flpvlttrdlaa.............klayeek.p.adveseqiekllaadai 81 
                   mk+L+i+ahp+p +s+++al + +++ l++ag hev+v dLya+ + +  +++d  a             k+a +++ + ad+ +eq ekll+ad++
    CTQ26227.1   1 MKVLLIYAHPEP-RSLNGALKNFAIRHLQQAG-HEVQVSDLYAMrWKAGYDADDSGAppvgefwrptldsKQAFAQGtQsADIVAEQ-EKLLWADTV 94 
                   9***********.8******************.*******************************9998653677777777*******.********* PP

                   EEEEE-BTTB--HHHHHHHHHHS-TTTSC.E....ETTCS.SCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHH.HHHHHHHTT-EEEE CS
  Flavodoxin_2  82 vlqfPlwwfgvPailKgwiDrvltagfaf.y....teegg.egrgggLkgkkalvivttGgpeesyqerglegaamdellpp.lrgilgfiGikdve 171
                   ++qfPlwwf++Pai+KgwiDrv+  gfa+      +++ g ++++g + gk+a++ivttGg +e+y++rg +g ++d++l+p  +g+l ++G+++++
    CTQ26227.1  95 IFQFPLWWFSMPAIMKGWIDRVYAWGFAYgVgehsDSHWGdRYGEGTFVGKRAMLIVTTGGWAEHYSPRGING-PIDDILFPiQHGMLFYPGFEVLP 190
                   *****************************99999955555577799999***********************9.*********************** PP

                   EEEEESCT..CCCH.HHHHHHHHHH CS
  Flavodoxin_2 172 pvlvegva..gaed.eealaealer 193
                   p++++ ++  +a + +++ a+ +er
    CTQ26227.1 191 PLVFYRTDktDAGQfADQCAALAER 215
                   ******9854444444444444444 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0     5e-18   4.5e-14       1     120 [.       1     155 [.       1     161 [. 0.89

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 5e-18
                 -EEEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEETTTS..--..---HCHGHT...................CGGSHHHHHHHHHHHH-SCEEEE CS
     FMN_red   1 mkilvisGSlrkgsntrklaewaaealkeagaevelidladl.ilpcalcdkdlese...................gqtsddvaellekiaaadaliiv 79 
                 mk+l+i++ + ++s + +l ++a ++l++ag ev++ dl  +  +    +d+d+  +                   g +s+d+ +  ek+ +ad +i+ 
  CTQ26227.1   1 MKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMrWKA--GYDADDSGAppvgefwrptldskqafaqGTQSADIVAEQEKLLWADTVIFQ 97 
                 9*************************************99998777..777777555778888888999999***99999999999************* PP

                 EEECTTCE-HHHHHHHHCHT-..................SSCHCCTT-EEEEEEE-SS CS
     FMN_red  80 tPeYngsysgllKnalDrlsr.................trgkkelrgKpvalvavggg 120
                  P ++ s+++++K  +Dr+ +                 ++g+  + gK ++l+++ gg
  CTQ26227.1  98 FPLWWFSMPAIMKGWIDRVYAwgfaygvgehsdshwgdRYGEGTFVGKRAMLIVTTGG 155
                 *******************88********99999999999999999888888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2028.44
//
Query:       CTQ26228.1  [L=302]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-29  100.6   9.2    1.5e-28   99.6   9.2    1.4  1  LysR_substrate  LysR substrate binding domain
    3.9e-16   58.7   0.1    1.2e-15   57.2   0.1    1.9  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    0.00016   21.4   0.0    0.00035   20.3   0.0    1.6  1  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.094   12.6   0.5       0.31   11.0   0.1    2.1  2  HTH_5           Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   9.2   3.3e-32   1.5e-28       5     207 ..      97     296 ..      94     298 .. 0.92

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 3.3e-32
                     CEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGG CS
  LysR_substrate   5 rgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsle 99 
                     + + r++a++++a+ +l p+la +r++ P+ +l + e ++++l+++ a+ ++Dl + +++ +++gl+ r L++e++vl+ +++hp a +  +sle
      CTQ26228.1  97 AETWRVAATDYMASAILLPMLAGLRQASPGSRLAVFELQPARLEQQAASDTVDLFFHTREGAPPGLHQRLLFRERYVLAGRAEHP-ALRPGLSLE 190
                     5688********************************************************************************8.44668999* PP

                     GGCTSEEEEE.STTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTCC CS
  LysR_substrate 100 dLadeplill.eegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgre 192
                      + +++++ + ++g g+  + + al++ gl +rv+l+v ++  +l+  ++ + +a+lp+ +vr    + +lv+++ p  ++  +e+ ++++++ +
      CTQ26228.1 191 TFCQLEHVIVsPDGGGFSAATDIALANLGLMRRVVLSVPHFLFMLETLRNSDLVAVLPERLVRG---QSGLVVVEPPL-AVAgFEMLMLWHERWH 281
                     *999666666367777**********************************************99...88888677777.7777************ PP

                     CHHHHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidflrea 207
                     ++pa +++++f+ ++
      CTQ26228.1 282 RDPAHQWLRQFIVNS 296
                     ***********9876 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.1   2.6e-19   1.2e-15       1      59 [.       9      67 ..       9      68 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 2.6e-19
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l++lr+++ +  e ++trAA++L+lsqp+vs q++rL+e + +pL+    rg+++T+++
  CTQ26228.1  9 LNLLRTLDVLLSENNVTRAAQRLNLSQPSVSIQLARLREIFADPLLMPGPRGMQPTARA 67
                799*********************************************99******976 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   7.8e-08   0.00035       1      44 [.      11      53 ..      11      59 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7.8e-08
                ...HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30  1 LleTLraylenggnisatAkaLhvHrnTlryRLrrieellgldl 44
                Ll+TL++ l +  n++++A++L+++  +++  L r++e++  +l
  CTQ26228.1 11 LLRTLDVLLSE-NNVTRAAQRLNLSQPSVSIQLARLREIFADPL 53
                89*******87.8*************************987655 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   6.8e-05      0.31      21      41 ..      27      47 ..       9      48 .. 0.83
   2 ?   -1.7   0.0      0.61   2.7e+03      36      45 ..     235     244 ..     220     246 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.8e-05
                HHHHHTS-HHHHHHHHHHHHH CS
       HTH_5 21 laeelglsqstvShHLkkLre 41
                 a  l+lsq+ vS +L++Lre
  CTQ26228.1 27 AAQRLNLSQPSVSIQLARLRE 47
                5789***************98 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.61
                 HHHHHHTTSE CS
       HTH_5  36 LkkLreaGLV 45 
                 L  Lr+++LV
  CTQ26228.1 235 LETLRNSDLV 244
                 7889999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2427.76
//
Query:       CTQ26229.1  [L=139]
Description: Glutathione transferase FosA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-12   47.3   0.0    2.9e-12   46.9   0.0    1.2  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    0.00023   21.9   0.0    0.00029   21.6   0.0    1.1  1  Glyoxalase_6  Glyoxalase-like domain
  ------ inclusion threshold ------
      0.013   15.7   0.0       0.84    9.7   0.0    2.1  2  Glyoxalase_3  Glyoxalase-like domain
      0.077   13.0   0.0       0.11   12.5   0.0    1.2  1  DUF1398       Protein of unknown function (DUF1398)
       0.13   12.5   0.0        2.7    8.3   0.0    2.2  1  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   8.2e-16   2.9e-12       1     128 []       4     114 ..       4     114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 8.2e-16
                 EEEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEE...EECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHH CS
  Glyoxalase   1 gidhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvl...neapsgaakhvkkieetvhhvafialdvedvgkaldrlke 96 
                 g++h++l+v++l+ s++FY++ LG++l  ++d         +a++ +g+ ++ l l   +++++++++ +        h   +  ++ d++ +  rl++
  CTQ26229.1   4 GLNHLTLAVSQLAPSVAFYQQLLGMTLHARWD--------SGAYLSCGDLWLCLSLdpqRRVTPPEESDY-------THY-AFSISEADFASFAARLEA 86 
                 79******************************........*************97711145555555555.......455.556678888********* PP

                 TTGEEEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase  97 agvkvvaepgrhyfgalysfyfrDpdGillei 128
                 agv + +   r    + y   f DpdG++le+
  CTQ26229.1  87 AGVAIWKLN-RSEGASHY---FLDPDGHKLEL 114
                 **9999864.44444445...9********96 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     8e-08   0.00029       2     105 ..       8     113 ..       7     115 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 8e-08
  Glyoxalase_6   2 vvldaadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpe......paknrvHldlav..edldaevarlvalGArvlreprdg 90 
                   ++l++++ a  +aF++++lg++++++     d  +   ++    +l++   p+      ++ +  H  ++   +d +  +arl+a+G    +  r++
    CTQ26229.1   8 LTLAVSQLAPSVAFYQQLLGMTLHARW----DSGAYLSCG--DLWLCLSLDPQrrvtppEESDYTHYAFSIseADFASFAARLEAAGVAIWKLNRSE 98 
                   6899999*******************9....555555544..4455555555555888544447999999844555688899999998877777777 PP

  Glyoxalase_6  91 thgrvlaDPeGneFc 105
                   ++   + DP+G+   
    CTQ26229.1  99 GASHYFLDPDGHKLE 113
                   6666********876 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00023      0.84       1      29 [.       5      33 ..       5      39 .. 0.92
   2 ?    4.2   0.0     0.011        41      79     102 ..      66      99 ..      50     131 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00023
  Glyoxalase_3  1 lDHvvlavpdleeaaarfarrlGftvtpg 29
                  l H++lav++l+  +a +++ lG+t++++
    CTQ26229.1  5 LNHLTLAVSQLAPSVAFYQQLLGMTLHAR 33
                  68***********************9865 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.011
  Glyoxalase_3  79 htlalrt..ddidataarlraaGvd........e 102
                    ++a+++  +d +  aarl+aaGv+         
    CTQ26229.1  66 THYAFSIseADFASFAARLEAAGVAiwklnrseG 99 
                   566776633677999********98766666542 PP

>> DUF1398  Protein of unknown function (DUF1398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.1e-05      0.11      77     108 ..      73     104 ..      62     114 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.1e-05
                 T---HHHHHHHHHHTT--EEEEETTTTEEEEE CS
     DUF1398  77 gettfetfcedlAkaGvekWivdleektrtYy 108
                  e +f  f  +l +aGv+ W  + +e   +Y+
  CTQ26229.1  73 SEADFASFAARLEAAGVAIWKLNRSEGASHYF 104
                 5789**********************999998 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00074       2.7       2      92 ..       7      90 ..       6     105 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00074
                  EEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETTEEEEEEEESSTT-THHHTS-EEEEEEEEES-HHHHHHHHCTTTEE CS
  Glyoxalase_4  2 QigivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgsvqieLieplegpeflaehgeglhhlaywvddldaavarleeqGfe 92
                  ++ ++V  l   va++++llG++ + r+ +  +    +++l  s         p +  ++ +e  +  + + +   d+    arle++G++
    CTQ26229.1  7 HLTLAVSQLAPSVAFYQQLLGMTLHARWDSGAYLSCGDLWLCLS-------LDPQRRVTPPEESDYTHYAFSISEADFASFAARLEAAGVA 90
                  77888888888889999999988877776654432222222222.......1233333444555555555555556777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1026.50
//
Query:       CTQ26230.1  [L=616]
Description: Similarity with helicase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-12   48.1   0.0    1.7e-05   24.4   0.0    2.4  2  UvrD_C           UvrD-like helicase C-terminal domain
    8.2e-11   42.4   0.0    1.6e-10   41.5   0.0    1.5  1  AAA_19           AAA domain
      1e-08   35.1   1.0    0.00011   21.8   0.0    2.6  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
    2.4e-08   34.4   0.2    1.3e-07   32.0   0.0    2.4  2  NERD             Nuclease-related domain
    3.9e-06   26.3   0.1    6.8e-06   25.6   0.1    1.3  1  DUF2075          Uncharacterized conserved protein (DUF2075)
    9.3e-05   22.5   0.2    0.00024   21.2   0.2    1.7  1  ResIII           Type III restriction enzyme, res subunit
    0.00014   21.7   0.1    0.00039   20.2   0.1    1.8  2  DEAD             DEAD/DEAH box helicase
    0.00035   20.3   0.0    0.00074   19.3   0.0    1.5  1  UvrD_C_2         UvrD-like helicase C-terminal domain
     0.0021   17.8   0.0     0.0031   17.2   0.0    1.3  1  AAA_30           AAA domain
     0.0033   17.2   0.0       0.65    9.7   0.0    2.6  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0056   17.0   0.0      0.015   15.6   0.0    1.7  1  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.026   14.9   0.0      0.056   13.8   0.0    1.5  1  AAA_16           AAA ATPase domain
       0.06   12.8   0.0       0.11   12.0   0.0    1.5  1  PhoH             PhoH-like protein
       0.11   12.9   0.0       0.29   11.5   0.0    1.7  1  RFXA_RFXANK_bdg  Regulatory factor X-associated C-terminal bi


Domain annotation for each model (and alignments):
>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.3e-08   1.7e-05       2     102 ..     420     526 ..     419     531 .. 0.87
   2 !   21.7   0.0   8.8e-08   0.00011     276     348 ..     531     597 ..     525     598 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.3e-08
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
      UvrD_C   2 vLekNyRStksLlkaankflenilnr.rale.kek...ktvekgekivvleaeteeeEaekiaatikallekneklediavLvRs.nkdadkiskaLkk 94 
                  L +NyR t+++l+ a +++  +ln+ ++++ k +   +   +g+   +l ++++++E   i + +k+  +     +d+a+L+ s  + +  + k+L+ 
  CTQ26230.1 420 ILDINYRNTQQILHFATSIAFDYLNDhIEDNfKYHkpdAGGLQGQVPNMLVFDNHQQEIIHIIKWLKQQHHTGVSWNDMAILCPStAHLSAILVKELRD 518
                 599*****************99999977777744446688889999999*************999999999999*********99677778889***** PP

                 xxxxxxxx RF
      UvrD_C  95 egipfnvv 102
                  +ip+  +
  CTQ26230.1 519 SKIPHYFI 526
                 ****9765 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 8.8e-08
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 276 seleeskkkekipiiTiHqAKGlEFdvVflagleegtfPsyrskkekrleEEkRlfYVaiTRAkkrLfisysk 348
                 ++++ s + e   ii + ++KGlEF  V +++ + +++      ++++l+ E + +YV+ TRA ++L +++++
  CTQ26230.1 531 DKKRYSPQSEFLSIIPLPSSKGLEFHSVAVID-SSNIMG-----NSDDLSDEIKRLYVGFTRATNNLLVTLHQ 597
                 4444444458888999999*************.555555.....466889999999*************9987 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   1.2e-13   1.6e-10       3     144 ..     240     398 ..     238     400 .. 0.78

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1.2e-13
      AAA_19   3 eave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae....atTiHrlal.............ldfddl 83 
                 e ++  l e++ ++ + +G+GKT +l  ++ +l + +++k ++il+v+++   a++l+  +++ ++     +t +H+                 +f   
  CTQ26230.1 240 ELLArSLGEGHRIIHGVAGSGKTLILLYRCLHLAKDNNLK-KPILVVCYNIMLAQKLKSLIKSHQLMvpveITNFHAWCYkqakiknilpnskQNFI-- 335
                 444447888999*************************997.****************996654333344559****996666666655554432222.. PP

      AAA_19  84 ltealelle........eaeeekklqeee.llivDEfqdvdelqyrLlkallgek.kklllvGDpdQliyv 144
                         e          ++++   e++ ++++DE  d ++   ++l+ +++++ ++ll++ D+ Q+iy+
  CTQ26230.1 336 --------EnleqavitGFQNKTIAAEQYsAVLIDEGHDFKQDWLKILSGMVDSEtNYLLFLYDDAQSIYQ 398
                 ........2444555553345555568888**********************999899***********96 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   8.7e-08   0.00011       4     102 ..     238     318 ..     235     352 .. 0.70
   2 !   10.7   1.0   0.00021      0.27     254     298 ..     353     398 ..     335     408 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 8.7e-08
                    HHHHHHHS.-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH..........HHHHCCHHCTT-HHHHHHHHH CS
  UvrD-helicase   4 eqreaias.lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee..........alkkaeqessdderlrlalqn 88 
                    +q+  ++s  +g+ ++   AGsGKT +l +r l+l k +    + ilvv +  + a+ lk+ i++                               
     CTQ26230.1 238 QQELLARSlGEGHRIIHGVAGSGKTLILLYRCLHLAKDN-NLKKPILVVCYNIMLAQKLKSLIKShqlmvpveitN-------------------- 312
                    555555555788999999*****************9999.55567***************9999855444444441.................... PP

                    CTTSEEEEHHHHHH CS
  UvrD-helicase  89 lseanisTlHsfcq 102
                            +H+ c+
     CTQ26230.1 313 --------FHAWCY 318
                    ........333333 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00021
                    HHHSSEEEESSGGG-BHHHHHHHHHHHTTTTT.EEEEE-GGG--GG CS
  UvrD-helicase 254 rerykeiliDEyQDTnkiQyrilkllasghee.lfmvGDpkQsIYg 298
                     e+y  +liDE  D  +   +il+ ++ ++ + l++  D+ QsIY+
     CTQ26230.1 353 AEQYSAVLIDEGHDFKQDWLKILSGMVDSETNyLLFLYDDAQSIYQ 398
                    68**********************9998888889999********6 PP

>> NERD  Nuclease-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0     1e-10   1.3e-07       4      92 ..      17     110 ..      14     131 .. 0.82
   2 ?   -1.9   0.1       3.5   4.5e+03      41      74 ..     299     334 ..     297     361 .. 0.65

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1e-10
        NERD   4 egEravakeLkelkedeylvlhdvrlrpgtgeiDhlvispk.gifviEvKnwsG.wifgd.kegrwtqkikkgf..knpleqakrhakalkksl 92 
                 +gE+++a+  ++ ++++++ + d++  ++++  D++++ p+ g++ iEvK w   +i +  k +  +++++ ++   +p+eq++++     ++l
  CTQ26230.1  17 AGEKRLARIFESNLSSDCTCWYDIPTGEKQTHPDFIILDPQrGLLFIEVKDWYIsKIKSAnKTHVIYETSDGDIslTHPIEQVRQYSYGAINYL 110
                 79*********99999**********88888**********99*********9646666677777777777777445*******9988776777 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.5
        NERD  41 ispkgifv.iEvKnwsGwifgd.kegrwtqkikkgf 74 
                 i  + ++v +E+ n+  w +++ k ++   ++k+ f
  CTQ26230.1 299 IKSHQLMVpVEITNFHAWCYKQaKIKNILPNSKQNF 334
                 555667777999998888888854444444443333 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   5.3e-09   6.8e-06       5     140 ..     252     400 ..     250     442 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 5.3e-09
     DUF2075   5 lVtGvaGtGKtvvllnllael.eddeeertavylsvNhplvlvlrealakke...............ekkkkkeafeklss.finnlsef...kkaeek 83 
                 +++GvaG+GKt++ll     l +d+++++   ++  N  l ++l++ +++++               ++ k+k+ + ++++ fi+nl++      ++++
  CTQ26230.1 252 IIHGVAGSGKTLILLYRCLHLaKDNNLKKPILVVCYNIMLAQKLKSLIKSHQlmvpveitnfhawcyKQAKIKNILPNSKQnFIENLEQAvitGFQNKT 350
                 79************99998884555666666667789999999999999999999999999999999999999999887654******98987666677 PP

     DUF2075  84 keepkedvvivDEAhrlltksdqaekqseenqlkelmkr.akvvvalvDegQelntge 140
                  + ++   v++DE h   +  d+       + l  +++   + +++l+D++Q + +++
  CTQ26230.1 351 IAAEQYSAVLIDEGHDFKQ--DW------LKILSGMVDSeTNYLLFLYDDAQSIYQKK 400
                 7889999********8887..44......456777777756699999***99998776 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   1.9e-07   0.00024      23     153 ..     247     374 ..     223     406 .. 0.61

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.9e-07
                 TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..........-SEEEEEHHHHHHT CS
      ResIII  23 rdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseaykeigkkvsgdkkka...kekdstnkkilvttiqsldad 117
                 ++ + +i+   G+GKTl+++  + +l+k ++ +  +l+++ ++ l +++++ +k+ +     ei+ +++   +k+   k++  ++k+ ++++ +++   
  CTQ26230.1 247 GEGHRIIHGVAGSGKTLILLYRCLHLAKDNNLKkPILVVCYNIMLAQKLKSLIKSHQLMVPVEIT-NFHAWCYKQakiKNILPNSKQNFIENLEQAVIT 344
                 566889999**********8888888887777647777777778887777444433333322222.222222222011123333344444444333333 PP

                 H........HHHTTT-SEEEEETGGGTTS.TTTHHH CS
      ResIII 118 seeeeeeseellrdrfdviiiDEaHrlgakkswrei 153
                       ++++   +++  ++iDE H +++   w +i
  CTQ26230.1 345 G----FQNKTIAAEQYSAVLIDEGHDFKQ--DWLKI 374
                 3....3455566778889*******9998..44444 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       6.5   8.4e+03      43      60 ..      44      61 ..      35      85 .. 0.71
   2 !   20.2   0.1   3.1e-07   0.00039       2     136 ..     236     370 ..     235     383 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6.5
                TTSTS-EEEEEESSHHHH CS
                xxxxxxxxxxxxxxxxxx RF
        DEAD 43 kgktgpkalivePtreLa 60
                +++t+p  +i+ P r L 
  CTQ26230.1 44 EKQTHPDFIILDPQRGLL 61
                466777777777777764 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 3.1e-07
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET.TSSHHHHHHHH....H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx....x RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig.gvaardqlskl....d 95 
                 d Q+e +   lg+g+ ++++  GsGKTl+ l  +l+     k+++ +k ++v+    +  q l+ l k+ +     v + i+  +a   +++k+     
  CTQ26230.1 236 DTQQELLARSLGEGHRIIHGVAGSGKTLILLYRCLHLA---KDNNLKKPILVVCYNIMLAQKLKSLIKSHQL---MVPVEITnFHAWCYKQAKIknilP 328
                 689********************************666...6788888999999999999999999999984...333222212222223333300013 PP

                 TTCSEEEEEHHHHHH.HHHCTSSHCTTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  96 ngvdivvgtpgrldd.llstgklnlsqvrflVlDEadrlldq 136
                 n+ + ++ + ++ +   ++++++  +q + + +DE + + ++
  CTQ26230.1 329 NSKQNFIENLEQAVItGFQNKTIAAEQYSAVLIDEGHDFKQD 370
                 444444444444443155899999*************99775 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   5.8e-07   0.00074      10      51 ..     550     593 ..     544     594 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.8e-07
    UvrD_C_2  10 aQGsefpaVivfdpdlaaarmgel..rrrlLYtavTRAreklil 51 
                 ++G+ef  V v+d +      ++l    + LY+++TRA+  l +
  CTQ26230.1 550 SKGLEFHSVAVIDSSNIMGNSDDLsdEIKRLYVGFTRATNNLLV 593
                 9**********999844444444567*************99976 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.4e-06    0.0031       4     127 ..     236     394 ..     233     415 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.4e-06
      AAA_30   4 aeQaaavealltsgdrvavltGpAGtGKttal..kalreaweaa.ggrviglAptgkaAkvLaeelg.......ieastiakllkrlk........... 81 
                 + Q++++++ l++g+   +++G+AG+GKt +l  + l  a +++ +++++++  +   A++L+  +        +e  + + + ++++           
  CTQ26230.1 236 DTQQELLARSLGEGH--RIIHGVAGSGKTLILlyRCLHLAKDNNlKKPILVVCYNIMLAQKLKSLIKshqlmvpVEITNFHAWCYKQAkiknilpnskq 332
                 679999999999996..9***********998223334444444559999***********99633322232334777888888777788888888888 PP

      AAA_30  82 ................grarlepg..tllivDEagmvdtkqlaallkaaekagakvilvGDerQ 127
                                 +  +++++  + +++DE     ++ l+ l   ++++   ++++ D++Q
  CTQ26230.1 333 nfienleqavitgfqnK--TIAAEqySAVLIDEGHDFKQDWLKILSGMVDSETNYLLFLYDDAQ 394
                 88888888888888643..333332488888887777777776666666666666666666666 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00051      0.65       2      16 ..     252     266 ..     251     294 .. 0.84
   2 ?   -3.5   0.0       5.6   7.2e+03      41      71 ..     334     364 ..     323     402 .. 0.71
   3 ?    4.7   0.0     0.017        22     181     231 ..     536     592 ..     504     594 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00051
  Viral_helicase1   2 vvhGvpGcGKStlir 16 
                      ++hGv+G+GK+ ++ 
       CTQ26230.1 252 IIHGVAGSGKTLILL 266
                      79*********7665 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.6
  Viral_helicase1  41 klpnlsvrtvdsflmalvkstkgkililDEy 71 
                      + +nl+   +  f+++ ++  ++  +++DE 
       CTQ26230.1 334 FIENLEQAVITGFQNKTIAAEQYSAVLIDEG 364
                      5566666667777777777777888888886 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.017
  Viral_helicase1 181 gvr....evttvhevqGltfdkVtlvllketdlelis..esrenllvAlTRhrkslv 231
                      + +    ++    +  Gl+f +V ++ +++   +     ++   l+v++TR++++l+
       CTQ26230.1 536 SPQseflSIIPLPSSKGLEFHSVAVIDSSNIMGNSDDlsDEIKRLYVGFTRATNNLL 592
                      44455666666677889999999888776543222223366889*********9986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-05     0.015       5     117 ..     248     380 ..     244     396 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka..............erlsseellealeqalrar 89 
                 +g+ +++G +G+GKT+ l      l ++++ + ++  vv +++    ++k+l +     + +e  +               ++s++ ++e leqa+ + 
  CTQ26230.1 248 EGHRIIHGVAGSGKTLILLYRCLHLAKDNNLK-KPILVVCYNIMLAQKLKSLIKSHQLMVPVEITNfhawcykqakikniLPNSKQNFIENLEQAVITG 345
                 68889**********87655444443333333.355555777777777777777666666666666677777777777777999999999999999999 PP

      AAA_22  90 av........ielliiDEaqhlrseealeeLrslln 117
                 +          ++++iDE + + +++ l+ L+ +++
  CTQ26230.1 346 FQnktiaaeqYSAVLIDEGHDF-KQDWLKILSGMVD 380
                 99999999999***********.9999999988888 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.4e-05     0.056      25     168 ..     249     387 ..     227     410 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.4e-05
      AAA_16  25 elvllsGesGvGKsslv..rellralekdggiflrgkcdqlesaipysa.laqalareellrqllde.....aesaeleawrekleeala......... 106
                 +  +++G +G+GK+ ++  r+l+  ++++       k       + y + laq l + +l++    +     ++  ++ + ++k++  l          
  CTQ26230.1 249 GHRIIHGVAGSGKTLILlyRCLH-LAKDN----NLKKPILV---VCYNImLAQKL-K-SLIKSHQLMvpveiTNFHAWCYKQAKIKNILPnskqnfien 337
                 55679***********9855554.55555....55555555...56644489999.7.89998888866555333333333333333333333333333 PP

      AAA_16 107 .................avpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrlleskpll 168
                                  +                               +++D+ ++++++ l++l+ ++++ ++ +ll
  CTQ26230.1 338 leqavitgfqnktiaaeQ----------------------------YSAVLIDEGHDFKQDWLKILSGMVDSETN-YLL 387
                 333443444333332222............................24455555555555555555555544332.333 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.4e-05      0.11       2      55 ..     232     284 ..     231     375 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.4e-05
                 ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE CS
        PhoH   2 ikpktkeQkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkriilt 55 
                 ik ++++Q+ ++++l +    ++ G aG+GKt++ +   +++ k++++k+ il+
  CTQ26230.1 232 IKIMDTQQELLARSLGEG-HRIIHGVAGSGKTLILLYRCLHLAKDNNLKKPILV 284
                 666777788888887743.3567899*********************9997775 PP

>> RFXA_RFXANK_bdg  Regulatory factor X-associated C-terminal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00023      0.29      90     115 ..     220     245 ..     206     251 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00023
  RFXA_RFXANK_bdg  90 qKklsLLRSPevikFLqkqqrlLseq 115
                      +K +s+LR P++ik + +qq+lL++ 
       CTQ26230.1 220 AKPISVLRTPNIIKIMDTQQELLARS 245
                      6889*******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4134.13
//
Query:       CTQ26231.1  [L=470]
Description: fused putative DNA-binding transcriptional regulator; putative aminotransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-35  121.9   0.0    4.6e-35  121.5   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
    9.9e-16   57.1   0.2    2.2e-15   56.0   0.2    1.7  1  GntR             Bacterial regulatory proteins, gntR family
    1.1e-06   28.2   0.0    2.4e-06   27.2   0.0    1.5  1  HTH_41           Helix-turn-helix domain
    4.9e-05   22.3   0.0    0.00024   20.0   0.0    2.0  1  Aminotran_MocR   Alanine-glyoxylate amino-transferase
  ------ inclusion threshold ------
      0.043   12.4   0.0      0.073   11.6   0.0    1.4  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
      0.059   13.5   0.0       0.56   10.4   0.0    2.6  2  HTH_28           Helix-turn-helix domain
      0.091   12.1   0.0       0.16   11.3   0.0    1.4  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
       0.15   11.5   0.0        1.8    8.0   0.0    2.4  2  HTH_Tnp_ISL3     Helix-turn-helix domain of transposase famil


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   0.0     2e-38   4.6e-35      19     357 ..     120     455 ..     105     461 .. 0.83

  Alignments for each domain:
  == domain 1  score: 121.5 bits;  conditional E-value: 2e-38
                    HHHHHHHHHHH.HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHT CS
  Aminotran_1_2  19 tlpevakaeke.galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrls 113
                     l+ ++++  + + +   ++ +y    g  el+e++a+++ ++ +  ++++  +v++sG++++++++     ++pgd i v +p y    ++lr  
     CTQ26231.1 120 SLKPIWRELSRaIQHNLTEVLNYDELAGRRELREQIARLMLDG-GSVVTAD-DLVLTSGCHSALSLALLSV-CQPGDIIAVESPCYYGTMQMLRGL 212
                    4555555555555677889999*******************44.4444455.6777777777777777777.68********************** PP

                    TSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTT CS
  Aminotran_1_2 114 ggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranvee 209
                    g++ +++p++  ++ ++ +eale al++ p     + vilv +++NP G +++ +  +++l+la++y +++f D++Y++++ + +++ + ++  + 
     CTQ26231.1 213 GLKTIEIPTD--PETGISIEALELALDQWP----IKGVILVPNCNNPLGFIMPDARKRAVLNLAQRYDIVIFEDDIYGELATEYPRPRT-IHSWDI 301
                    ********66..7789************88....4566*********************************************777645.555555 PP

                    STTEEEEEESSSTTSSGGG-EEEEEEEH..HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS...TEEEE CS
  Aminotran_1_2 210 epnllivgslsKafGlaGeRvGyilgna..avvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael...glkvl 300
                    +  +++++s+ K   ++G+R+G+i+     + + q++ ++++ +++s   aa++ + +      +++  mrq +q++ +  +  L+e    g+ v+
     CTQ26231.1 302 DGRVMLCSSFTKTI-APGLRIGWIAPGRyyDKLLQMKYAASGTNVPSTQLAACNFIREGHY--HRHVRRMRQIYQRNIEIYTCWLREFfpcGICVT 394
                    4558*********9.5*********9666899999**********7655556666665554..45********************999******** PP

                    CCSCSSEEEEEETHHCHHHHHHH.HHHTCTEEEEEGGGGTS....TTEEEEECTTS-HHHHH CS
  Aminotran_1_2 301 asqsgmflltdlsaetakelskk.Lleevgvyvtpgtsftv....pgrlRitvAglteeele 357
                     +++g+ l+++l+++ ++    k L    ++ v pg+ f +    ++++Ri++A  ++e+ +
     CTQ26231.1 395 RPKGGFMLWVELPEQVDMVCVAKqLCRL-KIQVAPGSLFSAagkyRNCVRINCALPPTEKHK 455
                    ***************5555555516555.************************665555544 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.2     1e-18   2.2e-15       2      64 .]       4      66 ..       3      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 1e-18
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y++++  L e+I +g +r+G+kLPs+r+L++e gVs +tv++A++ Le++++++ ++++G fV
  CTQ26231.1  4 YQHLATLLAERIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQLLEQQQMIVPQPRSGYFV 66
                8999*********************************************************98 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0     1e-09   2.4e-06       2      36 ..      22      56 ..      21      61 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1e-09
      HTH_41  2 vGdRlktIeelakeleLSvGlvQkALklLeddkai 36
                 G++l+++ +l++e ++S  +vQ+A +lLe++++i
  CTQ26231.1 22 HGEKLPSVRSLSQEHGVSISTVQQAYQLLEQQQMI 56
                6*********************************9 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.1e-07   0.00024     127     227 ..     195     292 ..     137     470 .] 0.69

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.1e-07
                     EEEEES--HHHHHHHHHHT-EEEEEEEETT.EE-HHHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTSS-B CS
  Aminotran_MocR 127 llvtvpGydrhfllleelGielltvdlqdd.GpdvdaveklvaedasvkGilavpkysnptGetiseevarrlaalkaaapdfrifaddayavhd 220
                     + v +p y   + +l+ lG++ + ++ +++ G  ++a+ +l+ ++  +kG++ vp+  np G ++   + r +  l a   d  if dd y   +
      CTQ26231.1 195 IAVESPCYYGTMQMLRGLGLKTIEIPTDPEtGISIEAL-ELALDQWPIKGVILVPNCNNPLGFIMPDARKRAVLNL-AQRYDIVIFEDDIYG--E 285
                     56889********************9997636777777.58899999***************99887666655555.4468*********96..4 PP

                     S.SSSS- CS
  Aminotran_MocR 221 lvaeedk 227
                     l +e ++
      CTQ26231.1 286 LATEYPR 292
                     5555555 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.3e-05     0.073      67     134 ..     168     236 ..     146     284 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.3e-05
                      -SEEEEESSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHT.HHHTTCEEEEESTTSHHHHHHHC CS
  Cys_Met_Meta_PP  67 geaalavssGmaAiaaailallkaGdeivvsddlYggtqrllkkv.lkklgievkfvdtsdleelekai 134
                      ++  +++s   +A+++a+l++++ Gd i v++ +Y gt ++l+ + lk ++i ++     ++e+le a+
       CTQ26231.1 168 ADDLVLTSGCHSALSLALLSVCQPGDIIAVESPCYYGTMQMLRGLgLKTIEIPTDPETGISIEALELAL 236
                      233444555579****************************99876244466666666556666666555 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00025      0.56       9      49 ..      20      61 ..      18      64 .. 0.80
   2 ?   -0.8   0.0      0.78   1.8e+03       2      15 ..     152     165 ..     151     166 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00025
      HTH_28  9 laaGh...svreaArelgisrrtvyrWikryeegGiagLvprrr 49
                + +G+   svr +++e+g+s +tv++  + +e+   +  vp++r
  CTQ26231.1 20 YRHGEklpSVRSLSQEHGVSISTVQQAYQLLEQ--QQMIVPQPR 61
                667766789**********************99..444466665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.78
      HTH_28   2 RleiikllaaGhsv 15 
                 R +i +l+++G+sv
  CTQ26231.1 152 REQIARLMLDGGSV 165
                 889********987 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.1e-05      0.16      42     144 ..     172     280 ..     132     282 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.1e-05
                      EEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTE.EEEEEB-GGGB---H....... CS
  DegT_DnrJ_EryC1  42 iavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitert.kaIlpVhlyGqvadm....... 127
                      + +s + +Al laL  +  +pgd + v s  + +t+++ + lg+k++ +  dp+t  i+ +a+e a+ +   k++++V    ++  +       
       CTQ26231.1 172 VLTSGCHSALSLALLSV-CQPGDIIAVESPCYYGTMQMLRGLGLKTIEIPTDPETG-ISIEALELALDQWPiKGVILVPNCNNPLGFimpdark 263
                      55666778888888764.4689*******************************997.8999999999987778888887766665322232233 PP

                      HHHHHHHHHCT-EEEEE CS
  DegT_DnrJ_EryC1 128 dalkaiaakhglkvieD 144
                       a+ ++a++++++++eD
       CTQ26231.1 264 RAVLNLAQRYDIVIFED 280
                      46777888888888887 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00082       1.8      27      47 ..      25      46 ..       3      49 .. 0.82
   2 ?    0.4   0.0      0.19   4.2e+02      15      32 ..     150     167 ..     149     168 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00082
  HTH_Tnp_ISL3 27 s.rsvkavArqlgvSwtTVwri 47
                     sv++ ++++gvS +TV+ +
    CTQ26231.1 25 KlPSVRSLSQEHGVSISTVQQA 46
                  4479***************976 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.19
  HTH_Tnp_ISL3  15 rleayilelllesrsvka 32 
                    l+++i++l+l++ sv +
    CTQ26231.1 150 ELREQIARLMLDGGSVVT 167
                   699**********99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3432.57
//
Query:       CTQ26232.1  [L=154]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-10   40.7   0.2    5.5e-10   39.0   0.0    1.9  3  MarR      MarR family
    4.2e-09   36.2   0.0    7.9e-09   35.3   0.0    1.5  1  MarR_2    MarR family
    2.2e-08   34.5   0.1      5e-08   33.3   0.0    1.6  2  HTH_27    Winged helix DNA-binding domain
     0.0015   18.8   0.0     0.0032   17.8   0.0    1.5  1  Rrf2      Transcriptional regulator
     0.0041   17.3   0.0     0.0072   16.5   0.0    1.4  1  HTH_34    Winged helix DNA-binding domain
  ------ inclusion threshold ------
      0.012   15.3   0.1      0.032   13.9   0.1    1.7  1  GntR      Bacterial regulatory proteins, gntR family
      0.016   14.8   0.0      0.033   13.7   0.0    1.5  1  HTH_24    Winged helix-turn-helix DNA-binding
      0.016   15.0   0.2       0.33   10.8   0.1    2.5  2  HTH_IclR  IclR helix-turn-helix domain
       0.13   12.7   0.4          4    7.9   0.1    2.2  2  DUF3037   Protein of unknown function (DUF3037)


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   2.8e-13   5.5e-10       1      58 [.      36      94 ..      36      94 .. 0.98
   2 ?   -2.6   0.0       2.8   5.5e+03      11      35 ..      98     122 ..      96     127 .. 0.61
   3 ?   -1.8   0.0       1.6   3.1e+03      22      27 ..     129     134 ..     105     145 .. 0.64

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 2.8e-13
                --HHHHHHHHHHHHSTT.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR  1 ltltqfviLrilyeqgp.lsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58
                lt++ + +L++l++ g+  svseLa+  g++ + + r+l  Lek+G++ Rs sp D+R+
  CTQ26232.1 36 LTQSSWTVLMQLHQLGDnVSVSELAEVQGIELPPLMRTLSLLEKQGYLVRSTSPYDKRI 94
                89**************99****************************************6 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.8
                 HHHHSTTEEHHHHHHHHTS-HHHHH CS
        MarR  11 ilyeqgplsvseLakklgvskstvt 35 
                 +l  +g + + +L + +++ +  vt
  CTQ26232.1  98 TLTAEGRAILEKLSCVIETYQERVT 122
                 5566666666777776666555555 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.6
                 HHHHHH CS
        MarR  22 eLakkl 27 
                 +La ++
  CTQ26232.1 129 DLATFS 134
                 455444 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   3.9e-12   7.9e-09       2      61 ..      35      93 ..      34      94 .. 0.97

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 3.9e-12
                T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2  2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61
                glt + + vL+ L+  +++ ++v+ela+  g++ + + r+l  L+++G+++r+++p DkR
  CTQ26232.1 35 GLTQSSWTVLMQLHQLGDN-VSVSELAEVQGIELPPLMRTLSLLEKQGYLVRSTSPYDKR 93
                9***************997.9*************************************** PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   2.5e-11     5e-08       1      68 []      36     103 ..      36     103 .. 0.97
   2 ?   -2.7   0.0       4.4   8.7e+03       6      16 ..     141     151 ..     136     153 .. 0.61

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 2.5e-11
      HTH_27   1 ltrqqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                 lt++ + vL ++   ++ ++ ++l+++  +e  + +  l+ L+++G+++r++++ d+r ++++lT++G
  CTQ26232.1  36 LTQSSWTVLMQLHQLGDNVSVSELAEVQGIELPPLMRTLSLLEKQGYLVRSTSPYDKRIRLLTLTAEG 103
                 79999********99999999**********************************************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.4
      HTH_27   6 alvLhlirhrr 16 
                 a+ L++ir+++
  CTQ26232.1 141 ACRLRNIREED 151
                 45588888444 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.6e-06    0.0032      12      55 ..      42      83 ..      33      88 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.6e-06
                HHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        Rrf2 12 hallyLakeeeeepvsseeiaerqnispsylekilakLrkaglv 55
                ++l+ L +  +   vs++e+ae q+i+ + l + l+ L+k+g++
  CTQ26232.1 42 TVLMQLHQLGD--NVSVSELAEVQGIELPPLMRTLSLLEKQGYL 83
                56777777776..49***************************85 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.6e-06    0.0072       9      71 ..      47     109 ..      41     117 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.6e-06
      HTH_34   9 Las.vdeadfvelkealeatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreafkk 71 
                 L +  d+++ +el e  ++    L   l+ Lek+gY++++ +  +k +  ll++T eGr+  +k
  CTQ26232.1  47 LHQlGDNVSVSELAEVQGIELPPLMRTLSLLEKQGYLVRSTSPYDK-RIRLLTLTAEGRAILEK 109
                 555567777888888888888889999************9999988.999*********98776 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.6e-05     0.032      20      56 ..      50      85 ..      44      88 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.6e-05
                TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        GntR 20 pGdkLPsereLaaefgVsrttvReALrrLeaeglver 56
                 Gd   s++eLa+  g+  +++++ L+ Le +g+++r
  CTQ26232.1 50 LGDNV-SVSELAEVQGIELPPLMRTLSLLEKQGYLVR 85
                69999.****************************998 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.7e-05     0.033      18      47 ..      54      83 ..      49      84 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
      HTH_24 18 isqreLAerlglSpstvnrrlkrLeeeGlI 47
                 s +eLAe  g+ ++++ r l  Le++G++
  CTQ26232.1 54 VSVSELAEVQGIELPPLMRTLSLLEKQGYL 83
                7999************************97 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.14   2.8e+02      10      27 ..       5      22 ..       5      23 .. 0.91
   2 ?   10.8   0.1   0.00017      0.33       8      50 ..      43      85 ..      41      87 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.14
                CT-CTTBSS-BHHHHHHH CS
    HTH_IclR 10 dalaeapqeltlselArr 27
                +++a++p +++ + + r+
  CTQ26232.1  5 ELFARRPLGMRMAMVVRQ 22
                68**********999987 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00017
                HHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR  8 iLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                +L +l + +  +++selA+  g+  +   R L+ L+++Gy+ +
  CTQ26232.1 43 VLMQLHQLGDNVSVSELAEVQGIELPPLMRTLSLLEKQGYLVR 85
                78889999999******************************87 PP

>> DUF3037  Protein of unknown function (DUF3037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.071   1.4e+02      74     114 ..       8      48 ..       2      50 .. 0.87
   2 ?    7.9   0.1     0.002         4      29      65 ..     109     145 ..     104     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.071
     DUF3037  74 akldlaerfrwltaprstviqtsevhtgltedpeaelerLf 114
                 a+++l+ r+  ++++++++i    + tglt++  + l +L 
  CTQ26232.1   8 ARRPLGMRMAMVVRQWRAIIDSAITDTGLTQSSWTVLMQLH 48 
                 5678999***********************99999998886 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.002
     DUF3037  29 flkvrleldeaRlralfpeldlealeeelkaleeice 65 
                 +l++ +e+ ++R+++  pe+dl+++++ l+++  +++
  CTQ26232.1 109 KLSCVIETYQERVTQTIPEADLATFSATLNQIACRLR 145
                 6788999999********************9987764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1198.74
//
Query:       CTQ26233.1  [L=355]
Description: HlyD family secretion protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-13   48.8   5.1    7.2e-06   25.4   0.5    3.1  3  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    8.9e-11   41.5   0.8    8.9e-11   41.5   0.8    3.1  2  Biotin_lipoyl_2  Biotin-lipoyl like
    0.00026   21.6   2.1       0.13   12.9   0.2    3.1  2  HlyD_3           HlyD family secretion protein
     0.0011   18.8   0.0     0.0043   16.9   0.0    2.0  2  Biotin_lipoyl    Biotin-requiring enzyme
      0.002   17.9   0.0     0.0032   17.3   0.0    1.4  1  HlyD             HlyD membrane-fusion protein of T1SS
  ------ inclusion threshold ------
       0.59   10.0   4.3        0.9    9.4   4.3    1.3  1  PCRF             PCRF domain


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.5   2.4e-09   7.2e-06      19      94 ..      45     121 ..      41     143 .. 0.83
   2 !   22.4   0.1   1.9e-08   5.7e-05      99     182 ..     190     272 ..     162     278 .. 0.90
   3 ?    3.7   0.0      0.01        31     110     168 ..     270     328 ..     269     339 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.4e-09
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX CS
    HlyD_D23  19 larvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalkakkklkkke..lleaarerLrllgvsee 94 
                 ++ vs+rv+G+v+++yv+   ++VkkG+ L+el+ + +++  e+   al+++k ++++   +++aar+ Lr  + +++
  CTQ26233.1  45 VTPVSSRVSGYVSHVYVH-NNSQVKKGDLLYELDPTPFINKVEAAQIALEQAKLSNQQLdaQIAAARANLRTAQYTAR 121
                 67799*************.99*************9999998888888887766664443679********99887655 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 1.9e-08
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  99 lektgkvqktvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvd 182
                 le+ +     ++v+a+++G+V +++++ G y++++++++ + + +t  ++a+  e+ l+  +v++++ v ++alpg+ f ++v+
  CTQ26233.1 190 LEEAQLNLAWTKVRAETDGMVSNLQLNPGIYATAATAVLALVNNNT-DIVADFREKSLRHTAVNTDAAVVFDALPGQVFPAHVT 272
                 555666667789*************************999988665.799******************************9997 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.01
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 110 tvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevt 168
                 +v+++ +G+   +++++Gq  qp+++   + d +++ + +++ +   + + +g++++v+
  CTQ26233.1 270 HVTSSDAGILAGQEAVNGQLSQPEQSTRWVRDAQRMRIHVALDQPLDKPLPTGARATVQ 328
                 5889999*******************999999999988887766666666666666665 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.8     3e-14   8.9e-11       2      46 ..      45      89 ..      43     114 .. 0.90
   2 ?   -2.9   0.5       2.1   6.3e+03      37      49 ..     185     197 ..     184     198 .. 0.79

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 3e-14
  Biotin_lipoyl_2  2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqae 46
                     v++++++vsG V+ ++V+ + +Vk+Gd+L+elD++ + +++  a+
       CTQ26233.1 45 VTPVSSRVSGYVSHVYVHNNSQVKKGDLLYELDPTPFINKVEAAQ 89
                     589*******************************98887777655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.1
  Biotin_lipoyl_2  37 alqlalaqaeaql 49 
                      ++++al  a+ +l
       CTQ26233.1 185 KYRNALEEAQLNL 197
                      7999999998776 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0031       9.3       3      48 ..      49      95 ..      47     129 .. 0.67
   2 !   12.9   0.2   4.5e-05      0.13       1      92 [.     201     290 ..     201     322 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0031
      HlyD_3  3 rApvdGvvvelnveegevvqagdelleiippd.tllveakvpaadlg 48
                 + v+G v+ + v +++ v +gd l e+ p+    +vea+  a + +
  CTQ26233.1 49 SSRVSGYVSHVYVHNNSQVKKGDLLYELDPTPfINKVEAAQIALEQA 95
                6889*********99999**********9964133355443333333 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.5e-05
      HlyD_3   1 tlrApvdGvvvelnveegevvqagdelleiipp.dtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktgaykvevs 92 
                 ++rA  dG v+ l++++g + +a +++l +++   ++ ++++  + +   + ++ ++v +++   ++++ ++ +++ ++ + a + a++ ++s
  CTQ26233.1 201 KVRAETDGMVSNLQLNPGIYATAATAVLALVNNnTDIVADFREKSLRHTAV-NTDAAVVFDA--LPGQVFPAHVTSSDAGILAGQEAVNGQLS 290
                 59*****************************86235555555555555555.4666666665..56679999999988877765555555544 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.4e-06    0.0043      38      73 .]      41      76 ..      40      76 .. 0.94
   2 ?   -2.1   0.0       1.2   3.5e+03      44      59 ..     201     216 ..     199     223 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.4e-06
                   CTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 38 amKmemeieapkaGvvkeilvkeGdtvevgdllaki 73
                   +m ++++++++++G+v+ ++v ++++v+ gdll ++
     CTQ26233.1 41 VMRVVTPVSSRVSGYVSHVYVHNNSQVKKGDLLYEL 76
                   69999***************************9875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                    EEEBSSSEEEEEESST CS
  Biotin_lipoyl  44 eieapkaGvvkeilvk 59 
                    ++ a+ +G v+ +  +
     CTQ26233.1 201 KVRAETDGMVSNLQLN 216
                    689999**99988765 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.1e-06    0.0032       3      50 ..      20     277 ..      18     328 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.1e-06
                 EEEEEEEEEE......................................................................................... CS
                 xxxxxxxxxx......................................................................................... RF
        HlyD   3 avfvawaala......................................................................................... 12 
                  +++aw+++a                                                                                         
  CTQ26233.1  20 LGIFAWFIVAdiwipltpdstvmrvvtpvssrvsgyvshvyvhnnsqvkkgdllyeldptpfinkveaaqialeqaklsnqqldaqiaaaranlrtaqy 118
                 566778888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  CTQ26233.1 119 tarndkvtldryqrlstmqnvsqsdldkvrttwqtseqsvsalnaqiqnlliqrgerddkrnvtlqkyrnaleeaqlnlawtkvraetdgmvsnlqlnp 217
                 888888888888888888888888888888888888888888888888888888888888888888888888888888888888899999999999999 PP

                 .........................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSB CS
                 .........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  13 .........................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispd 50 
                                          e++l++ +v+ ++ v+fdA+p++    f++ V++ +++
  CTQ26233.1 218 giyataatavlalvnnntdivadfrEKSLRHTAVNTDAAVVFDALPGQ---VFPAHVTSSDAG 277
                 999999999999999*********************************...899999999999 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.3    0.0003       0.9       4     103 ..      84     183 ..      81     186 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0003
                 HHTTTTTST.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT.....-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTTS.E CS
        PCRF   4 eleelekklsdpevwedqekakklskelaeleeivealeeleealedleeakelle.edeelaelaeeeleelekeleeleeelkklLlpkdendek.n 100
                 ++e  + +l++ ++ ++q +a+ ++   a+l++   ++++ + +l+  + ++++ + ++++l + ++   ++ e+++++l++++++lL+ ++e+d+k n
  CTQ26233.1  84 KVEAAQIALEQAKLSNQQLDAQ-IAAARANLRTAQYTARNDKVTLDRYQRLSTMQNvSQSDLDK-VRTTWQTSEQSVSALNAQIQNLLIQRGERDDKrN 180
                 5566666777777777666654.77788888888888888888888888888886566667774.57889*********************99988747 PP

                 EEE CS
        PCRF 101 ail 103
                 ++l
  CTQ26233.1 181 VTL 183
                 766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1146  (0.0639188); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2554.27
//
Query:       CTQ26234.1  [L=354]
Description: putative (R)-hydroxyglutaryl-CoA dehydratase activator (oxidoreductase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-39  132.5  22.7    8.8e-39  132.5  22.7    2.4  2  DUF2955   Protein of unknown function (DUF2955)


Domain annotation for each model (and alignments):
>> DUF2955  Protein of unknown function (DUF2955)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5  22.7   4.9e-43   8.8e-39       1     139 [.      25     163 ..      25     164 .. 0.99
   2 ?    0.6  15.3     0.026   4.6e+02      47     140 .]     240     338 ..     195     338 .. 0.70

  Alignments for each domain:
  == domain 1  score: 132.5 bits;  conditional E-value: 4.9e-43
     DUF2955   1 raLRiafgvtlglalskllgwplgvfapvlpvllLtlvpklslkallqlllsvvltalevlllvellqhyPvlmtllvflllllkfrlmsrgskflfga 99 
                 ++ Ria+++t++l +s++++ ++gvf++v+p++l++lvp+++l++++q+++s++++++e++l+v++l+++Pv+mtl+vf+l++++fr+ms+g+ fl+g 
  CTQ26234.1  25 QTVRIAVAGTIALSISTFYDVQYGVFFVVYPLMLMSLVPMFNLHVARQFIFSAAVNCVEMVLIVGYLSQWPVIMTLVVFALYVMRFRFMSQGPLFLLGS 123
                 689************************************************************************************************ PP

     DUF2955 100 mlvislsillvfasydttdvedlilsllaalllavviaal 139
                 m+v++ s +l+f+sy+t+ +++l++s++ a+++av++ al
  CTQ26234.1 124 MGVVCQSTMLNFMSYPTSNWHTLMFSNMEACVMAVALSAL 163
                 ************************************9987 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.026
     DUF2955  47 lqlllsvvltalevlllvellqhyPvlmtllvflllllk..frlmsr.gskflfgamlvislsillvfasydttdvedl..ilsllaalllavviaala 140
                 +  ++++ l +l+v l++  ++++ +lm+ l++l l ++  ++ m + g+   f+ + +i++++  +++ y++ + +dl  i s++++l+++ ++++l+
  CTQ26234.1 240 VVGVVLACLYILVVQLIIYDFSNHMILMMPLIGLGLAFSarLHVMEKvGAGVGFASITTIGIMFGQNLHPYQDLVFSDLyrITSVTVSLVVTLTLVFLM 338
                 3334455566677777888899999***9999888776511556665477789*******************999988744789********9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       857  (0.0477997); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2520.48
//
Query:       CTQ26235.1  [L=84]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-11   42.2   0.0    5.1e-11   41.9   0.0    1.2  1  DUF3343   Protein of unknown function (DUF3343)


Domain annotation for each model (and alignments):
>> DUF3343  Protein of unknown function (DUF3343)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   2.9e-15   5.1e-11       3      49 ..       5      51 ..       3      63 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 2.9e-15
     DUF3343  3 vitFssthhAiaaekalkeggiearliplPreisagCGlalrvneed 49
                +++F+st  + ++ kal+++g+ +++  +Pr++++gCGl++ ++  +
  CTQ26235.1  5 LFLFHSTVGVVRMRKALQAAGVAFEVKDIPRQLRSGCGLCILLEGTE 51
                89***************************************995444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 669.72
//
Query:       CTQ26236.1  [L=255]
Description: ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-66  223.9   0.7      3e-66  223.7   0.7    1.0  1  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
  ------ inclusion threshold ------
      0.022   13.6   0.1       0.44    9.3   0.0    2.2  2  MreB_Mbl     MreB/Mbl protein


Domain annotation for each model (and alignments):
>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.7   0.7   3.3e-70     3e-66       1     267 []       5     248 ..       5     248 .. 0.96

  Alignments for each domain:
  == domain 1  score: 223.7 bits;  conditional E-value: 3.3e-70
                  EEEEE-SSEEEEEEEETTTEEEEEEEE--TTS-HHH.........HHHHHHHHHHT--GGGECEE..EEESTTCCCTCTTBSEEE-..HHHHHHHHHH CS
  BcrAD_BadFG   1 vGiDgGsTttkavlmdekgevlgrgitnsanlesvrfeaaekvleealtealerageeeadieetylvgtgyGratlpekfekeiirseilvhgdGav 98 
                  vGiD+GsT+tk +l+ +   v+ r +  ++ ++ +          +a++ea+e+++   ++  + +l++tgyGr+ ++  f++++++ ei++hg+Ga 
   CTQ26236.1   5 VGIDSGSTATKGILLADG--VIVRRFLCPTPFRPA----------DAIHEAWETLRAGLTE--TPFLTLTGYGRQLVD--FADKQVT-EISCHGLGAR 85 
                  8****************9..9************55..........7************998..5588***********..******8.********** PP

                  HH-TT--EEEEEETTEEEEEEEE.TTEEEEEEEESS--TTSHHHHHHHHHHHT--TTTHHHHHTT--S-------SHHHHHHHHHHHHHTT--HHHHH CS
  BcrAD_BadFG  99 alypgtrtvldigGqdskgiqid.kgkvenfqmndrcaageGrylgiiadelnmglreldglaekatkkarinstcavfaeaelrdalsggekaedIl 195
                  +l+p+trtv+digGqdsk+iq+d +g+  +f mnd+caag+Gr+l++i+++l++++++ld +++   ++++i+s+c+vfae+e+++ +s g + e+Il
   CTQ26236.1  86 LLAPDTRTVIDIGGQDSKVIQLDaGGNLSDFLMNDKCAAGTGRFLEVISRTLGASVEQLDAITDGV-EPHAITSMCTVFAESEVISLRSAGVAPEAIL 182
                  *************************************************************99765.599**************************** PP

                  HHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH.....HHHH-S-EE--GGGGGHHHHHHHHHH CS
  BcrAD_BadFG 196 aglhraialrvialisrsggvtdevtltGGvakneaavkelrklvkenygevkininpdsiytgalGAalfA 267
                  ag+ +a+a+r +++i r+ + ++ +++tGGv++++a+ ++l     e++ ++ + ++pd++++ga+GAal++
   CTQ26236.1 183 AGVINAMARRSANFIGRLSAQGP-LLFTGGVSHCAAFARML-----ESHVGMAVTTHPDAQFAGAIGAALIG 248
                  *********************87.**********9999999.....8999999****************985 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0    0.0075        67     136     166 ..      81     111 ..      64     115 .. 0.83
   2 ?    9.3   0.0   4.9e-05      0.44     252     318 ..     180     247 ..     161     254 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.0075
                 HTT--TTSSS-EEEEEE-SS-EEEEEEETTE CS
    MreB_Mbl 136 GaglpveepsgnmvvdiGggttevavislgg 166
                 G g  + +p    v+diGg  ++v  + +gg
  CTQ26236.1  81 GLGARLLAPDTRTVIDIGGQDSKVIQLDAGG 111
                 556677889999********99987666665 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 4.9e-05
                 HHHHHHHHHHHTS-HHHHHHHHHH-.EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHT CS
    MreB_Mbl 252 aiveavkevLektppeLaadivdrg.ivltGGgallkgldkllseetglpvkvaedpltcvakGtgkv 318
                 ai+  v +++ + +++ ++ +  +g +++tGG +    + ++l++++g+ v++  d+  + a G++ +
  CTQ26236.1 180 AILAGVINAMARRSANFIGRLSAQGpLLFTGGVSHCAAFARMLESHVGMAVTTHPDAQFAGAIGAALI 247
                 677888888899999999999998856779***************************99999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2150.86
//
Query:       CTQ26237.1  [L=383]
Description: putative 2-hydroxyglutaryl-CoA dehydratase (hgdB-like) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-79  267.8   0.2    2.2e-79  267.6   0.2    1.0  1  HGD-D     2-hydroxyglutaryl-CoA dehydratase, D-component
  ------ inclusion threshold ------
      0.011   15.6   0.2        6.3    6.8   0.0    3.3  3  LcrG      LcrG protein
       0.13   12.6   0.1        0.3   11.4   0.1    1.6  1  DIMCO_N   Dinitrogenase iron-molybdenum cofactor, N-terminal


Domain annotation for each model (and alignments):
>> HGD-D  2-hydroxyglutaryl-CoA dehydratase, D-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.6   0.2   3.7e-83   2.2e-79       1     323 []      40     383 .]      40     383 .] 0.96

  Alignments for each domain:
  == domain 1  score: 267.6 bits;  conditional E-value: 3.7e-83
                 STTS-HHHHHHTT-EEEE-.----GGGHHHHTTTS-SSS-HHHHHHHHHHHT......HH-SEEEEES-SHHHHHHHHHHTTTS-EEEE---.....HH CS
       HGD-D   1 qwyypeellaAaglvpiflargpsrepldlaekylpsfgCglardalgaale......kpddlvvanttCdqvkkilenlakiipytvldiP.....ee 88 
                 ++++p+e++ Aag+v++ l + +s+e +++aek+lp+++C+l+++++g+  +      +++dlvv++ttCd++kk++e++a+++ ++v+++P      +
  CTQ26237.1  40 CTFMPQEIAMAAGAVVVSL-CSTSDETIEEAEKDLPRNLCPLIKSSYGFGKTdkcpyfYFSDLVVGETTCDGKKKMYEYMAEFKAVHVMQLPnsasdAA 137
                 899*************988.************99**************99999******************************99***********99* PP

                 HHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHTTSSS-SS-HHHHH.HHHHHTT.S-HHHHHHHHHHHHHHHHHH.T...S. CS
       HGD-D  89 avkyledelenliaaleeitgkrideesleaaikeanetrellkelytllpqspapihgfdll.llakvvf.lgkeeatealeelleeleer.s..ks. 181
                 ++++++ e+ +l + +e  +g++i+e +l++ai ++n++r++l  +y+l + +p+ ++g d+l +++ ++f ++k + ++ l +++e + ++ +  k  
  CTQ26237.1 138 SRALWKTEILRLQQVIEARFGTPISEAALREAIVLKNRERRALAHFYRLGQLNPPALSGGDILkVVYGATFrFDKTALIDELHAMAERIHQEwQqgKRl 236
                 **************************************************99***********99999***99******************44433435 PP

                 .TS-EEEEEES---TT--HHHHHHHHT.T-EEEEEESTTTHHHHS-.SSHHH.HHHHHHHHHT..--TT.SS-HHHHHHHHHHHHHTT-SEEEEEEETT CS
       HGD-D 182 .eriRllltGipvellaaklmkaleaglgavvvnndacypsrlvry.vgdvgqplealasgyy..kcpv.spkerrlewirdlideykvdgvifqtggg 275
                   r+R+l+tG+p+   a+k+ +a+e++ g+ vv  ++c+++   +  v ++g++++al+++y+   c++ sp+++rl+ ++++++ey++dgvi   ++ 
  CTQ26237.1 237 ePRPRILITGCPIGGAAEKVVRAIEEN-GGWVVGYENCTGAKATERcVAEEGDVYDALTDKYLaiGCSCiSPNDQRLQLLSQMVEEYQADGVIDVILQA 334
                 79*************************.66**************779889999****************99**************************** PP

                 -HHHHHHHHHHHHHHH.HTT--EEEEEE-S-STTHHHHHHHHHHHHHH- CS
       HGD-D 276 Crpasgyiglirrale.kegiPvlsletDqsdiregqlktRVeaflEiL 323
                 C+++ +++  i+r l+ +  +P++++etD+s  + gql tRV af+E+L
  CTQ26237.1 335 CHTYAVESLAIKRHLRqQHDLPYMAIETDYSTADLGQLSTRVAAFIEML 383
                 ****************9999****************************8 PP

>> LcrG  LcrG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.024   1.4e+02      29      59 ..      43      73 ..      12      78 .. 0.90
   2 ?    6.8   0.0     0.001       6.3      56      81 ..     212     237 ..     163     244 .. 0.85
   3 ?    2.3   0.0     0.027   1.6e+02      15      33 ..     304     322 ..     292     352 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.024
        LcrG 29 lleglGlapeageklfggleaelvkaaeqeL 59
                + +++ +a+ a+ + + +++ e +++ae++L
  CTQ26237.1 43 MPQEIAMAAGAVVVSLCSTSDETIEEAEKDL 73
                7799999*********************998 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.001
        LcrG  56 eqeLleevkRrRsrqpqqgeqGkRrr 81 
                    L++e++ + +r +q+ +qGkR+ 
  CTQ26237.1 212 KTALIDELHAMAERIHQEWQQGKRLE 237
                 5679********************75 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.027
        LcrG  15 airdsdeRakllqellegl 33 
                  i   d+R +ll+ ++e+ 
  CTQ26237.1 304 CISPNDQRLQLLSQMVEEY 322
                 57788**********9975 PP

>> DIMCO_N  Dinitrogenase iron-molybdenum cofactor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   5.1e-05       0.3      12      44 ..     137     169 ..     135     180 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.1e-05
     DIMCO_N  12 AaraLpgvdvaqLlevLqerlgeplteekLakl 44 
                 A+raL ++++ +L +v+++r+g p++e++L++ 
  CTQ26237.1 137 ASRALWKTEILRLQQVIEARFGTPISEAALREA 169
                 99****************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 3173.04
//
Query:       CTQ26238.1  [L=79]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-22   78.5   0.6    3.4e-22   78.3   0.6    1.0  1  DUF2164   Uncharacterized conserved protein (DUF2164)


Domain annotation for each model (and alignments):
>> DUF2164  Uncharacterized conserved protein (DUF2164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.6   1.9e-26   3.4e-22       1      70 [.       4      73 ..       4      76 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 1.9e-26
     DUF2164  1 IeLskeekeelvakiqrYfeeeldeeigeleAeflLdffleeiGphiYNqalaDaqalleerledleeel 70
                IeL +++++ l +++++Y++e +d e+++++Aef++df+++e+Gp +YN ++++a ++ +++ e+++ee+
  CTQ26238.1  4 IELGQAQRDLLRDRLSKYCAETFDLELEQFDAEFFVDFIAKELGPLFYNAGIEEAIRTHQAWSERIQEEM 73
                89******************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 623.62
//
Query:       CTQ26239.1  [L=413]
Description: multidrug efflux system protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-32  112.1  38.4    2.7e-32  112.1  38.4    1.5  1  MFS_1     Major Facilitator Superfamily
    7.9e-09   34.9   9.5    7.9e-09   34.9   9.5    2.3  2  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
       0.45    9.8  26.5      0.051   12.9  19.7    2.0  2  MFS_4     Uncharacterised MFS-type transporter YbfB


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1  38.4   4.5e-36   2.7e-32       6     343 ..      27     355 ..      22     365 .. 0.79

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 4.5e-36
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfp 104
                 f ++l+ +++ p +  ++ +d++++++ +   ++ly++g ++++ +lG+lsdr+Grr+vll+g+l+f l++l+ lf++s++ +l++r++qG   +++++
  CTQ26239.1  27 FSAYLTTDLIQPGIL-HVVRDFNADVALAPASVSLYMAGGMALQWLLGPLSDRIGRRPVLLTGALIFTLACLATLFTTSMTQFLIARFVQGTSICFIAT 124
                 778999999999999.9*****************************************************77777977777****************** PP

       MFS_1 105 agaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkal 203
                 +g++ + + f +++  r ++++++ + +++i+gpl g++l++ + W a+f i+a+++l+a + +lll + e ++r+ ++  ++        l++ ++ +
  CTQ26239.1 125 VGYVTVQEAFEEKRSIRLMAVITSVVLVAPIVGPLSGAALMHFIHWKALFGIIAAMGLVAWL-GLLLTMPETVRRGDVPFSPL------GVLRD-FRNV 215
                 ***********************************************************966.55777777777777777666......56666.999* PP

       MFS_1 204 lkdpvlwillialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrls.drlgrrrrlllallllllaalglallavtssa 300
                 ++++ +++  ++l l  + +++ ++ +p++l++  gl+ +   a   ++++++v +i+ l ++r++ d + + r+ l a+++ +l++++l+  ++ ++ 
  CTQ26239.1 216 FRNRIFLLGAATLSLSYIPLMSWVAVSPVILMDAGGLTtS-EFAWSQVPVFSAV-IIANLSVARWVkDPTRP-RFVLSAVPVQMLGLAILIAGNLVWHH 311
                 ****8865666666666677779999999*********53.4444444444444.34566777777355554.66666777777777777777777777 PP

       MFS_1 301 vllll..vlvliGfglgfvfpsll..alasdlappeeagtasglfnt 343
                 v+l+   +  ++ fg g++fp+l+  +l s+ +p    gt+s+  n+
  CTQ26239.1 312 VWLWSvlGTCFYAFGIGLIFPTLFrfTLFSNDLP---KGTVSASLNI 355
                 7777733555588888888888862255566665...4666666664 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   9.5   1.3e-12   7.9e-09      50     196 ..      56     197 ..      29     198 .. 0.93
   2 ?    0.4   0.8     0.039   2.3e+02     279     335 ..     333     396 ..     307     408 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.3e-12
                 HHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHH CS
    Sugar_tr  50 livsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlait 148
                 ++vs++++G+++ + ++g+l+dr+GR+++ll++a++f  + + + +++   s+ +++++R++ G ++ ++ ++  ++++E   +k   +l+ +  + + 
  CTQ26239.1  56 ASVSLYMAGGMALQWLLGPLSDRIGRRPVLLTGALIFTLACLATLFTT---SMTQFLIARFVQGTSICFIATVGYVTVQEAFEEKRSIRLMAVITSVVL 151
                 789*********************************************...9****************************99999999999999999** PP

                 HHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---HH CS
    Sugar_tr 149 fGilvaaifglglnktsnadgwrillglqlvpallllill.lflPESPr 196
                 +  +v+  +g++l ++     w+ l+g+ +++ l+  ++l l++PE+ r
  CTQ26239.1 152 VAPIVGPLSGAALMHFIH---WKALFGIIAAMGLVAWLGLlLTMPETVR 197
                 ******************...***********987776654889**987 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.039
                 THHHHSS-THH.......HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 279 tifenlglsks.......llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg 335
                 t+f+ + +s++       +  +i++  v ++++  a +l  + GR +++ll +a ++++++ l+
  CTQ26239.1 333 TLFRFTLFSNDlpkgtvsASLNIVILSVSALSIEGARWLWFHGGRLPFHLLAVAAGIVAACCLA 396
                 5555555555555555667789999999999999999999999999999999888887777776 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  19.7   8.6e-06     0.051      31     279 ..      51     308 ..      35     325 .. 0.74
   2 ?    0.3   1.9     0.057   3.4e+02     194     278 ..     316     402 ..     310     410 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.6e-06
       MFS_4  31 gllaaaNylGYLvGallaafalsagaeRlr....llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrervgallfaG 125
                 + la a    Y++G ++    l     R++    ll g+l  +l+ la  +t+s++ fl++Rf+ G +  ++  +g  +v++  +++r+ r++a++ + 
  CTQ26239.1  51 VALAPASVSLYMAGGMALQWLLGPLSDRIGrrpvLLTGALIFTLACLATLFTTSMTQFLIARFVQGTSICFIATVGYVTVQEAFEEKRSIRLMAVITSV 149
                 55666666669999888877777778887777889*******************************9999999999999999999**********9887 PP

       MFS_4 126 vGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaaeaakaeq...kslpllalllaYglaGfGYiitatFlva..iar 219
                 v +   + g l  ++l ++ ++++l  ++a++ +v+ l ++l++p +  r +  ++ +   ++   + +  +++ll      + Yi+ + ++    ++ 
  CTQ26239.1 150 VLVA-PIVGPLSGAALMHFIHWKALFGIIAAMGLVAWLGLLLTMP-ETVRRGDVPFSPLGVLRdfrNVFRNRIFLLGAATLSLSYIPLMSWVAVspVIL 246
                 7555.45566677788899999999********************.66666666655544444000444455566666777899*****9985422555 PP

       MFS_4 220 dgaggalleallWllvGl...aaivgvlvwlrvakrsglrralaaallieavgvllsllspsp 279
                 + agg    + +W+ v +    +i+ + v ++v++ ++ r +l  a+ ++ +g+++ ++++ +
  CTQ26239.1 247 MDAGGLTTSEFAWSQVPVfsaVIIANLSVARWVKDPTRPRFVLS-AVPVQMLGLAILIAGNLV 308
                 6699999999***8766532034445567788888877666655.456777777776665544 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.057
       MFS_4 194 lalllaYglaGfGYiitatF.lvaiardgaggalleallWllvGlaaiv..gv.lvwlrvakrsglrralaaallieavgvllsllsps 278
                   l   +  +G+G+i +  F   ++ +d  +g + ++l  +++ ++a+   g+ ++w +    +    +la+a  i a++ l+ ll + 
  CTQ26239.1 316 SVLGTCFYAFGIGLIFPTLFrFTLFSNDLPKGTVSASLNIVILSVSALSieGArWLWFH--GGRLPFHLLAVAAGIVAACCLAGLLRHQ 402
                 55666777899999999999445566666999999999999999987541144455554..4444667778888888888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3008.59
//
Query:       CTQ26240.1  [L=430]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.3e-109  367.5   1.0   1.4e-109  367.3   1.0    1.0  1  DUF445          Protein of unknown function (DUF445)
  ------ inclusion threshold ------
      0.032   14.2   0.1        1.2    9.1   0.0    2.3  2  DUF3206         Protein of unknown function (DUF3206)
       0.27   11.3   2.2        8.6    6.5   0.1    2.9  2  UPF0147         Uncharacterised protein family (UPF0147)
       0.32   11.2   3.7        1.6    9.0   0.0    3.8  4  Se-cys_synth_N  Selenocysteine synthase N terminal
        5.8    7.8   6.2         29    5.5   0.1    3.0  3  PSK_trans_fac   Rv0623-like transcription factor


Domain annotation for each model (and alignments):
>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.3   1.0    4e-113  1.4e-109       2     366 ..      49     421 ..      48     422 .. 0.99

  Alignments for each domain:
  == domain 1  score: 367.3 bits;  conditional E-value: 4e-113
      DUF445   2 eaAliGaladwfAikaLFRhPlglpiP...fttglIPknkeriakklgnfVeehLLtkeslakkLkeaevasklaewlknptnkeslaaiveellkeil 97 
                 eaA++GaladwfA++aLFR+   +p+P    +t++IP+nk+ria++lg+fVee++L++ sl + ++++++a +l++w ++p+n++++ +++ +++++ l
  CTQ26240.1  49 EAAMVGALADWFAVVALFRR---IPLPfvaRHTAIIPRNKDRIADNLGRFVEEKFLDTPSLVALIRRYQPALMLGNWFSQPENARRVGQHLLQVMSGFL 144
                 8******************9...99997777******************************************************************** PP

      DUF445  98 edlddesikellkknlkkkleevipepllgkllellleeerhkkllddlldriknllkdeevkekikelidelieeesgklv........lesivsmfl 188
                 e +dd +i++ll+++++k +++v+++++ + +le l++++rh+klld+l++++ +ll+++ +++ i++ i +++e+e++  +         e+ ++m++
  CTQ26240.1 145 ELTDDARIQRLLRRAVHKAIDKVDLTQTSAMMLEGLTRDNRHQKLLDSLINQLIALLQRDSSRAFIARGIVHWLETEHPLKAkllptewlGEHSAEMVT 243
                 *******************************************************************************999***************** PP

      DUF445 189 reltsilekvksdpdhllreeedkkvreliadllndpelaakveklkkkklsdlevqeyeealwealkdlllkdlneeesllrerisklleklgeklae 287
                 ++++++l++v +d +h++r+ +d++v++li++l++dp++a+k++++k  + +d++ ++y+ ++w +l+ ++++d+++++s +++ri+++ +++ge+l +
  CTQ26240.1 244 DAVNTLLDEVTHDRTHQIRQTFDRAVQKLIDNLKSDPDMAQKADNIKAWLKNDETFNHYLGEVWGDLRGWVKNDISSDDSRIKQRIAEAGQWFGETLLR 342
                 *****************************************************************************99******************** PP

      DUF445 288 dpklreklnkflenaaakvlekyrldiskiveetvnafdaeeleelIelivgkeLqaIrinGtlvGgliGlllylvsll 366
                 d++lre+ln++le+aa++v++++++ +++++++tv+++da++++++Iel++gk+Lq+IrinGtlvGg iGlll l+s++
  CTQ26240.1 343 DDALRESLNEHLEQAAHRVAPEFAAFLTRHISDTVKSWDARDMSRQIELNIGKDLQFIRINGTLVGGTIGLLLWLLSQI 421
                 ****************************************************************************997 PP

>> DUF3206  Protein of unknown function (DUF3206)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00034       1.2      51      97 ..     232     279 ..     223     292 .. 0.83
   2 ?    2.6   0.0     0.035   1.2e+02      13      56 ..     296     339 ..     283     369 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00034
                 THHHHHHHHHHHHHHHHHTT-TT-SSHHHHHHHHHHHH.HHHHHHHTT CS
     DUF3206  51 dwleeavaglqslvvqslledenyddveelkdelarll.rlydalakd 97 
                 +wl e  a + +  v++ll++  +d + ++++ ++r + +l d+l+ d
  CTQ26240.1 232 EWLGEHSAEMVTDAVNTLLDEVTHDRTHQIRQTFDRAVqKLIDNLKSD 279
                 8*********************************99772466666654 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.035
                 HHHHHHHHHHHHHHHHHHHH---TT--HHHHHHHHH-TTHHHHH CS
     DUF3206  13 eeitdrflsntlafsvGlvtedistfdpivlkimekepdwleea 56 
                 +e  +++l ++    +G v +dis  d  + + + +  +w+ e+
  CTQ26240.1 296 DETFNHYLGEVWGDLRGWVKNDISSDDSRIKQRIAEAGQWFGET 339
                 5667788888888899************************9887 PP

>> UPF0147  Uncharacterised protein family (UPF0147)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0024       8.6       6      40 ..     137     171 ..     133     177 .. 0.81
   2 ?    3.2   0.2     0.026        93       6      40 ..     244     276 ..     239     291 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0024
                 HHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHT-TT CS
     UPF0147   6 kevielLeeiiedtsvPrniRraakeakekLkdek 40 
                  +v++   e+++d  ++r  Rra+++a++k+  ++
  CTQ26240.1 137 LQVMSGFLELTDDARIQRLLRRAVHKAIDKVDLTQ 171
                 5677777899*****************99876555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.026
                 HHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHT-TT CS
     UPF0147   6 kevielLeeiiedtsvPrniRraakeakekLkdek 40 
                 + v +lL+e+++d++    iR++ + a++kL d+ 
  CTQ26240.1 244 DAVNTLLDEVTHDRT--HQIRQTFDRAVQKLIDNL 276
                 556677899999986..446666666666655543 PP

>> Se-cys_synth_N  Selenocysteine synthase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.86   3.1e+03      11      27 ..     101     117 ..      98     119 .. 0.75
   2 ?   -0.6   0.1      0.45   1.6e+03      27      38 ..     155     166 ..     153     167 .. 0.87
   3 ?    9.0   0.0   0.00045       1.6      20      38 ..     234     252 ..     231     253 .. 0.88
   4 ?   -1.2   0.1      0.68   2.5e+03      26      38 ..     344     356 ..     339     357 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.86
  Se-cys_synth_N  11 LtalearallaalpRal 27 
                     L ++++ al+ ++  al
      CTQ26240.1 101 LDTPSLVALIRRYQPAL 117
                     77888899998887665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.45
  Se-cys_synth_N  27 lvrdavrafLdr 38 
                     l+r av+ ++d+
      CTQ26240.1 155 LLRRAVHKAIDK 166
                     89******9996 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00045
  Se-cys_synth_N  20 laalpRalvrdavrafLdr 38 
                     l +++ ++v+dav+  Ld+
      CTQ26240.1 234 LGEHSAEMVTDAVNTLLDE 252
                     778999************8 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.68
  Se-cys_synth_N  26 alvrdavrafLdr 38 
                     +++r+ +++ L++
      CTQ26240.1 344 DALRESLNEHLEQ 356
                     5788888888887 PP

>> PSK_trans_fac  Rv0623-like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.6   5.7e+03      30      41 ..     157     168 ..     149     199 .. 0.53
   2 ?    5.5   0.1    0.0082        29      21      62 ..     234     277 ..     231     293 .. 0.75
   3 ?    4.4   0.4     0.018        64      31      63 ..     344     376 ..     321     391 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.6
                    XXXXXXXXXXXX CS
  PSK_trans_fac  30 rrAleerlerlr 41 
                    rrA+ +++++++
     CTQ26240.1 157 RRAVHKAIDKVD 168
                    444444444443 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0082
                    XXXXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHHHHT..S CS
  PSK_trans_fac  21 tgeskteAvrrAleerlerlrreraepllerllallrraaa..k 62 
                     ge   e v++A+   l+++ ++r+ + ++++++  ++  +  k
     CTQ26240.1 234 LGEHSAEMVTDAVNTLLDEVTHDRTHQIRQTFDRAVQKLIDnlK 277
                    57888999************988999999999888887777331 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.018
                    XXXXXXXXXXXXXXX--HHHHHHHHHHHHHTS- CS
  PSK_trans_fac  31 rAleerlerlrreraepllerllallrraaaka 63 
                    +Al+e l++  +++a +++ +++a+l+r+  ++
     CTQ26240.1 344 DALRESLNEHLEQAAHRVAPEFAAFLTRHISDT 376
                    688999988887799999999999999998744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3217.10
//
Query:       CTQ26241.1  [L=220]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-22   79.1  15.8    3.4e-22   78.8  15.8    1.0  1  LysE      LysE type translocator


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8  15.8   1.9e-26   3.4e-22       2     188 ..      21     205 ..      20     209 .. 0.89

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 1.9e-26
        LysE   2 slllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksve.aslvkp 99 
                 + llspGp+++l + ++++  ++g+i + lg++ g a++i+l+++G  lL + ap ++ +++llG+ yLlw+g l +r+   +   ++ +   +   + 
  CTQ26241.1  21 VALLSPGPDFFLLVGYAVRYRIRGSIGLCLGIAAGNALYIVLAIVGWGLLRQ-APLLFLLIELLGAGYLLWIGSLLIRSRPATLAMESVRAArPGFGRQ 118
                 5789**********************************************99.**************************98888777766666889999 PP

        LysE 100 flkglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarls.rrlsskkvlriinvvvgvlligfavk 188
                  l gl  sl+NPk+ lf+l+++ +ll++  + +  + ++  + +v++ ++w  ll    a+++ +r+    v+  ++  +g++l++f++ 
  CTQ26241.1 119 LLLGLGSSLLNPKNALFYLALMTSLLGP--AVTLLQQTVSGLWMVSVVFFWDLLLVSAIALPQiQRRLGAIVW-RVERAAGAILMLFGLG 205
                 999************************7..8888888888888888889999888877777761455555667.78999********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1736.22
//
Query:       CTQ26242.1  [L=247]
Description: AraC-like ligand binding domain protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-19   69.2   0.2    5.2e-19   68.5   0.2    1.3  1  AraC_binding    AraC-like ligand binding domain
    5.5e-16   58.6   0.1    1.1e-15   57.6   0.1    1.5  1  HTH_18          Helix-turn-helix domain
    2.3e-08   33.6   0.0    6.2e-08   32.2   0.0    1.7  1  Cupin_2         Cupin domain
    2.7e-07   30.5   0.0    3.8e-05   23.7   0.0    2.4  2  HTH_AraC        Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.012   15.3   1.2       0.02   14.6   1.2    1.4  1  AraC_binding_2  AraC-binding-like domain
      0.051   13.0   0.1       0.12   11.9   0.1    1.6  1  Cupin_4         Cupin superfamily protein


Domain annotation for each model (and alignments):
>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.2   1.7e-22   5.2e-19      12     118 ..      28     137 ..      19     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 1.7e-22
                   TT-SEEEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG---EEETTEEE....E---TTT CS
  AraC_binding  12 pdhsfpphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegelleriledssilagapllpa..lledeel 106
                    ++++++h h+++ ++ ++eG+ r+ ++g++y l+pGdl+ +pp+ pH++ + ++ + +y++ly+++++ ++   d++  a+ +  +   ll+d++l
    CTQ26242.1  28 SRQAYKRHSHPQLSVGAIIEGETRCLCAGQEYLLQPGDLIVIPPHAPHSCNPLHDRPRSYHMLYLDATWCRAQRPDIPPGASIT--SPqpLLRDSPL 122
                   45889**************************************************************98888777666554433..2247******* PP

                   HHHHHHHHHHH...H CS
  AraC_binding 107 aqllralfrll...e 118
                    + ++++++l+   +
    CTQ26242.1 123 FASFQQVVALMnrgS 137
                   ***********3332 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.1   3.8e-19   1.1e-15       2      80 ..     163     239 ..     162     240 .. 0.92

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 3.8e-19
                 HHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   2 aaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 a   ++   t+ r++k+ +gltp+ +++  R+e+A+ +L+  +g+++a++ +++GF+d+s+F++ f  ++  tP++y +
  CTQ26242.1 163 AHDSALRKETVIRAVKQDTGLTPASLINMARIEYAKTRLR--AGDPIADVGYQAGFADQSHFHKTFVSYTAATPRQYAQ 239
                 556667788999***************************5..8**********************************76 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   2.1e-11   6.2e-08      12      57 ..      33      77 ..      27      90 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.1e-11
                EEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEE CS
     Cupin_2 12 pshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrf 57
                ++h+Hp+   ++ ++eGe +    g+e+ l++Gd++++p++ pH  
  CTQ26242.1 33 KRHSHPQL-SVGAIIEGETRCLCAGQEYLLQPGDLIVIPPHAPHSC 77
                69******.***********************************75 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.013        39      24      42 .]     172     190 ..     158     190 .. 0.83
   2 !   23.7   0.0   1.3e-08   3.8e-05      10      40 ..     206     237 ..     201     239 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.013
                 HHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  24 yFsrlFkketGmtPsqyrt 42 
                 + +r+ k+ tG tP + ++
  CTQ26242.1 172 TVIRAVKQDTGLTPASLIN 190
                 66899*********99986 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 1.3e-08
                 -HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHH CS
    HTH_AraC  10 tiediAdelgf.SrsyFsrlFkketGmtPsqy 40 
                  i+d+  ++gf ++s+F+++F ++t  tP+qy
  CTQ26242.1 206 PIADVGYQAGFaDQSHFHKTFVSYTAATPRQY 237
                 69*****************************9 PP

>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.2   6.6e-06      0.02      53     154 ..      37     142 ..      24     156 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.6e-06
  AraC_binding_2  53 ddfylvqlplsGraeveqggrevvlgpgdavvldpgrpyrl..rwsadceqlvlrip....ralLerplraplrfaprldldsgagalwrrllrs 141
                      + + v ++++G+ +  ++g+e+ l+pgd++v+ p+ p +    ++ + + ++l ++    ra  ++ + ++  + p+  l++ +  + ++ + +
      CTQ26242.1  37 HPQLSVGAIIEGETRCLCAGQEYLLQPGDLIVIPPHAPHSCnpLHDRPRSYHMLYLDatwcRAQRPDIPPGASITSPQPLLRDSPLFASFQQVVA 131
                     346899********************************886224666777777778865663333333333444555555666566666666666 PP

  AraC_binding_2 142 lvaelaelgpala 154
                     l+++  +l+ +l+
      CTQ26242.1 132 LMNRG-SLE-QLP 142
                     66666.354.344 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.9e-05      0.12     176     199 ..      57      80 ..      25      89 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.9e-05
                 EEEEE-TT-EEEE-TT-EEEEEBB CS
     Cupin_4 176 edfvLepGDlLYlPrgviHqgvae 199
                 ++  L+pGDl+ +P++ +H+  ++
  CTQ26242.1  57 QEYLLQPGDLIVIPPHAPHSCNPL 80 
                 6889***************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2026.95
//
Query:       CTQ26243.1  [L=308]
Description: putative transposase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-89  296.9   0.0    8.7e-89  296.5   0.0    1.1  1  Transposase_31  Putative transposase, YhgA-like
     0.0019   18.3   1.7     0.0038   17.3   1.7    1.5  1  DUF2802         Protein of unknown function (DUF2802)
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.024   14.4   0.1    1.4  1  LPD23           Large polyvalent protein associated domain 23
      0.046   13.9   0.1       0.13   12.4   0.1    1.8  1  MRP_L53         39S ribosomal protein L53/MRP-L53


Domain annotation for each model (and alignments):
>> Transposase_31  Putative transposase, YhgA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.5   0.0   1.9e-92   8.7e-89       1     203 [.       8     209 ..       8     210 .. 0.99

  Alignments for each domain:
  == domain 1  score: 296.5 bits;  conditional E-value: 1.9e-92
  Transposase_31   1 tpHDalfkellsdpetardfleihlpeelkelldletlklesgsfieeelreslsDlLfsvktkegkegyiyvliEhksspdklmafrLlrYava 95 
                     tpHDa+fk++l++ +tardfl ihlp++l++++dl+tl+les sfiee+lr+++sD+L+s+kt +g egyiyv+iEh+sspd +mafrL+rYa+a
      CTQ26243.1   8 TPHDAVFKQFLTQADTARDFLAIHLPPALRQRCDLDTLQLESASFIEESLRAWYSDVLWSLKTASG-EGYIYVVIEHQSSPDAQMAFRLMRYAIA 101
                     7****************************************************************9.**************************** PP

  Transposase_31  96 imerhlkakekeklplviplvfYhGeee.wplslslldlfddpelakelykseflLvDltkvpddeilekrrlallllvqkhirqrdlaellkkl 189
                     +m+rhl+ ++++ lplv+p++fYhG+++ +p+sl++ld+f+dp+la+ely s f+LvD+t++pddei+++rr+all+l+qkhirqrdl+ ++++l
      CTQ26243.1 102 AMQRHLDGGHTK-LPLVVPMLFYHGATTpYPWSLNWLDCFADPQLASELYISPFPLVDVTVIPDDEIVRHRRVALLELIQKHIRQRDLMGIVEQL 195
                     ************.********************************************************************************** PP

  Transposase_31 190 velleelekteeql 203
                     +++l ++ ++++ql
      CTQ26243.1 196 TTILLSGDANDRQL 209
                     ******99999986 PP

>> DUF2802  Protein of unknown function (DUF2802)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.7   8.5e-07    0.0038       2      63 ..     232     306 ..     231     308 .] 0.93

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8.5e-07
     DUF2802   2 mgqrlaelekrlkqleerleel.............eqqdpqsklYsqAiklvrqGasveelaeecgLsraEAeLl 63 
                 + qr+ + ++rl  ++erl+e+             +q+ +++   + A+++++ G  +e +++  gL+ +E+  l
  CTQ26243.1 232 VAQRVPQHRERLMTIAERLQEVgrrkgkregrlegRQEGQHAEALRIAQRMLADGIARETVVKITGLTADEIAVL 306
                 579999999************************9888889*******************************9877 PP

>> LPD23  Large polyvalent protein associated domain 23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   5.3e-06     0.024      12      41 ..     272     301 ..     265     302 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.3e-06
       LPD23  12 dlealaeAkeleaqGedaesIrqeTGWfrg 41 
                  +eal+ A+++ a+G  +e++ + TG + +
  CTQ26243.1 272 HAEALRIAQRMLADGIARETVVKITGLTAD 301
                 6799**********************9876 PP

>> MRP_L53  39S ribosomal protein L53/MRP-L53
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1     3e-05      0.13       4      40 ..      17      51 ..      14      58 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
     MRP_L53  4 FspnaksaRlFLsl.lskppaarnpgckiktkvlpdas 40
                F  +a +aR+FL++ l  ppa r++ c+++t +l  as
  CTQ26243.1 17 FLTQADTARDFLAIhL--PPALRQR-CDLDTLQLESAS 51
                8889********9626..9999999.*****9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2312.68
//
Query:       CTQ26244.1  [L=456]
Description: Succinate-semialdehyde dehydrogenase (NADP(+)) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-139  466.0   0.2   1.2e-139  465.8   0.2    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  465.8   0.2  6.8e-144  1.2e-139       9     462 .]       3     452 ..       1     452 [. 0.97

  Alignments for each domain:
  == domain 1  score: 465.8 bits;  conditional E-value: 6.8e-144
                 EEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH.HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH CS
      Aldedh   9 ievinPatgeviakvpaataedvdaavaaAkeafk.awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaek 106
                 ++++nPa+++ i ++pa + +dv+aa+++A + ++ awak ++e R ++L+k+adl+ +r+eela++ ++e+Gk ++++r+ev+ +++++ryya+ a+ 
  CTQ26244.1   3 YQTVNPANNQLIKTYPAHSDADVEAALQQADALYHsAWAKGDIEPRLAVLHKLADLIDSRAEELAKIASQEMGKLIKQSRGEVKLCAQIARYYADNAKS 101
                 6799****************************66669************************************************************** PP

                 .HSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-T CS
      Aldedh 107 .legevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehp 204
                  l+    ps e  +a+v ++P+Gv +a+ PWNfP   +++ lap laaGN v+ K a+ +p++a  +a+l++eag P+g+ + +  s+++v++ +++++
  CTQ26244.1 102 fLAPVKYPS-ELGEAWVEHHPIGVLLAVEPWNFPYYQLMRVLAPNLAAGNPVIAKHASIVPHCAETFAHLVREAGAPEGAWTNLFISQDQVAK-IIADD 198
                 667666676.6899******************************************************************9999997766665.56668 PP

                 TESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TTS CS
      Aldedh 205 evdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpld 303
                 +v+  ++tGs + g  +a++aak++k+ tlElGG++ ++vl+daDl++av+  v++ + naGQvC+aa+r++++e+i+d+f+ k+ ea++++k+gdpld
  CTQ26244.1 199 RVQGAALTGSEKAGSVVAAQAAKHIKKSTLELGGNDVFVVLDDADLERAVKIGVQARLNNAGQVCTAAKRFILHENIADAFLTKFSEAFRQVKIGDPLD 297
                 *************************************************************************************************** PP

                 TT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEEE CS
      Aldedh 304 edtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagvf 402
                 e+t++GPl s+++l+++ k+v+ea+++gakl lGg   +a  ++g+f+ePt+l+++t+d++ + eE FGPV+ ++ +k++eeai++aNd++yGL+++vf
  CTQ26244.1 298 ESTTLGPLSSKDALDTLSKQVDEAVKNGAKLHLGG---KAVAREGNFFEPTILTGITRDNPAYFEEFFGPVAQIYVVKNDEEAIQLANDSHYGLGGAVF 393
                 ***********************************...8899********************************************************* PP

                 -SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 403 tkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 ++d+era+r+a+++e+G+vyiN  t+ a+e  pfgGvk+Sg+Gre +  g++e+++ k v
  CTQ26244.1 394 SQDIERAKRMASAIETGMVYINWLTDTAPEL-PFGGVKRSGYGRELSDLGIKEFVNQKLV 452
                 ************************9999999.***********************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3311.51
//
Query:       CTQ26245.1  [L=181]
Description: putative porin [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-45  152.5   4.8      1e-44  152.3   4.8    1.0  1  YfaZ      YfaZ precursor


Domain annotation for each model (and alignments):
>> YfaZ  YfaZ precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   4.8   5.8e-49     1e-44       1     180 []       1     181 []       1     181 [] 0.97

  Alignments for each domain:
  == domain 1  score: 152.3 bits;  conditional E-value: 5.8e-49
        YfaZ   1 mkkirlasvaslllvaasvnavsfnaelgkeytnlglglgtntdglavsGnyirsDddGd.vagvglglnlpvGpltatvGakgvylsadegdeGsava 98 
                 m+k+++  +a+l +v++s+ av f  e gk++tnl++++g   +gl     + ++ ddG    gvg g nl+vGp++ + Gak +yl +++gd+G a  
  CTQ26245.1   1 MRKLNILILAALTAVSGSAMAVGFTVEQGKNFTNLNMEMGKSSSGLYAESHWLKNTDDGSqTGGVGAGYNLEVGPVMLNAGAKAIYLGPKKGDNGVAFP 99 
                 899999****************************************99999****9999725679********************************** PP

        YfaZ  99 vGgglalaigksfslfgeayyaPeeLssGvdsyeeansgvrynilrplalevGyryinlegkdgarDnalaDGayiGaklrf 180
                 vGgg++ a+ +s+ +fge+y aP+ L   v+ y ean+gv ++ + p++l+vGyr+++++gk+g+ +++l DGay+G+++ f
  CTQ26245.1 100 VGGGVNVALTDSIHVFGEGYVAPDGLNNSVKNYVEANGGVSWSPIGPVTLKVGYRHVSVDGKEGRPNHTLIDGAYVGGGVTF 181
                 ******************************************************************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1322.90
//
Query:       CTQ26246.1  [L=322]
Description: putative GTPase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-51  172.5   0.2    9.2e-51  171.9   0.2    1.2  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
    6.1e-19   67.7   0.0    1.1e-18   66.9   0.0    1.4  1  CobW_C           Cobalamin synthesis protein cobW C-terminal 
    0.00083   19.3   0.0        0.8    9.6   0.0    2.3  2  RsgA_GTPase      RsgA GTPase
     0.0029   17.6   0.1      0.006   16.6   0.1    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0079   16.4   0.1       0.25   11.6   0.0    2.2  2  AAA_28           AAA domain
  ------ inclusion threshold ------
      0.017   15.2   0.0        0.2   11.8   0.0    2.2  2  AAA_33           AAA domain
      0.018   15.3   0.0      0.039   14.2   0.0    1.6  1  AAA_22           AAA domain
      0.024   15.2   0.2      0.087   13.4   0.1    2.1  2  AAA_18           AAA domain
      0.027   14.8   0.1       0.11   12.8   0.1    1.8  1  AAA_16           AAA ATPase domain
      0.027   15.0   0.0      0.054   14.0   0.0    1.6  1  ABC_tran         ABC transporter
       0.03   14.1   0.0      0.055   13.2   0.0    1.5  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.035   14.0   0.0      0.068   13.1   0.0    1.4  1  MobB             Molybdopterin guanine dinucleotide synthesis
      0.035   14.5   0.0       0.12   12.8   0.0    1.9  1  AAA              ATPase family associated with various cellul
      0.052   13.6   0.0       0.12   12.4   0.0    1.6  1  AAA_14           AAA domain
      0.075   13.1   0.0       0.32   11.1   0.0    2.0  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
      0.098   12.6   0.3       0.95    9.5   0.0    2.6  3  YAcAr            YspA, cpYpsA-related SLOG family
       0.12   12.0   0.0       0.21   11.3   0.0    1.3  1  AAA_30           AAA domain
       0.13   12.1   0.0        0.3   10.9   0.0    1.6  1  AAA_29           P-loop containing region of AAA domain
       0.14   12.0   0.0       0.23   11.3   0.0    1.3  1  ATPase_2         ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.9   0.2   9.7e-54   9.2e-51       2     175 ..      10     186 ..       9     188 .. 0.95

  Alignments for each domain:
  == domain 1  score: 171.9 bits;  conditional E-value: 9.7e-54
                 EEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCHCCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHH....TT-SEEEEEECTTTTH CS
        cobW   2 vtvltGflGsGKTtLlnhllenraglklavivNefgevsiDaellretgveivelenGciCctlredllkelealeere....erldviliEttGlaeP 96 
                 vt+ltGflG+GKTtLl+h+l++++g k+avi+Nefgevs+D +l+ +++++i +l+nGciCct +++l  +l +l++ +     ++d+++iE+tG+a+P
  CTQ26246.1  10 VTLLTGFLGAGKTTLLRHILNEQHGFKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCTRSNELEDALLDLLDSRdrgeIEFDRLVIECTGMADP 108
                 899************************************************************************9999899888************** PP

                 HHH..HTT.SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHHHHHHTTS-E CS
        cobW  97 apv..aft.eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeeallekleerlrqlnpeakv 175
                  p+  +f  ++ l++++ ld+v+a+vDa ++ +++ ++ + a++q+ +ad ++l+KtD++ ++   ekl+erl ++n++a++
  CTQ26246.1 109 GPIiqTFFsHQVLCERYLLDGVIALVDAVHA-DQQMDQFTIAQSQVGYADRILLTKTDVAGDT---EKLRERLARINARAPI 186
                 ***8755469999***************998.9****************************99...6799999999999987 PP

>> CobW_C  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   1.2e-21   1.1e-18       1      92 [.     228     319 ..     228     321 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 1.2e-21
      CobW_C   1 issfvfrarrpfdperleellee...elpegilRaKGivwlagkpdalvlqgvggrlrlepagawwaaededrrseLVfIGrdldkealeeaLda 92 
                 +ss+v++ + p+d ++  +++e+   +  e+++R+KG++w++g+p++l++qgv++ ++ +  +++w +  e+++s LVfIG +l++e++++a++ 
  CTQ26246.1 228 VSSIVVELDYPVDISEVSRVMENlllSFAEQLMRYKGMLWIDGEPNRLLFQGVQRLYSAD-WDRPWGD--ETPHSTLVFIGIQLPEEEIRAAFAG 319
                 689********************999999*******************************.******9..**********************986 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00084       0.8     100     123 ..       9      40 ..       1      66 [. 0.75
   2 !    7.7   0.0    0.0033       3.1      22      74 ..     130     182 ..     127     210 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00084
                  SEEEEECSTTSSHHHHHHHHCTT........- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpe........l 123
                   +++l G  G+GK+tL+ ++l+e         
   CTQ26246.1   9 AVTLLTGFLGAGKTTLLRHILNEqhgfkiavI 40 
                  68999***************997333333333 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0033
                  EEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHH CS
  RsgA_GTPase  22 vvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelea 74 
                  v++l++     +++d+f ++  + g    i+l+K+D++ ++e+l+e  ++++a
   CTQ26246.1 130 VIALVDAVHADQQMDQFTIAQSQVGYADRILLTKTDVAGDTEKLRERLARINA 182
                  56677777788999**************************9977776666554 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   6.3e-06     0.006      20      42 ..       9      31 ..       1      41 [. 0.81

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.3e-06
                EEEEEEESTTSSHHHHHHHHHHH CS
        TsaE 20 dvilLeGdLGaGKTtlvrglaka 42
                +v lL+G LGaGKTtl r+++++
  CTQ26246.1  9 AVTLLTGFLGAGKTTLLRHILNE 31
                4689***************9976 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00026      0.25       4      40 ..      13      54 ..      10     102 .. 0.76
   2 ?    2.6   0.0      0.15   1.4e+02      76     138 ..     120     187 ..     116     193 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00026
      AAA_28  4 itGgestGKTtlleaLaar....gypvv.pEaareileekla 40
                +tG  ++GKTtll+++ ++    ++ v+  E++   ++++l 
  CTQ26246.1 13 LTGFLGAGKTTLLRHILNEqhgfKIAVIeNEFGEVSVDDQLI 54
                78999*********9884335555668888999888888873 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.15
      AAA_28  76 lfcDrglldtlaYarayggeaeaelea...aarekry.dlvfllppap..eidddgeRredleereaid 138
                 ++c+r lld ++ +     + ++++++   a  +  y d+++l++++   ++++  eR  + ++r+ i+
  CTQ26246.1 120 VLCERYLLDGVIALVDAVHA-DQQMDQftiAQSQVGYaDRILLTKTDVagDTEKLRERLARINARAPIY 187
                 899******99999666555.454444432445555626699999988233344444445555555555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00021       0.2       1      25 [.      10      34 ..      10      83 .. 0.81
   2 ?    1.1   0.0      0.43   4.1e+02      83     121 ..     141     179 ..     114     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00021
      AAA_33  1 lvllvGlpGsGKstlaerllkklga 25
                ++ll G  G+GK+tl++++l+++++
  CTQ26246.1 10 VTLLTGFLGAGKTTLLRHILNEQHG 34
                67899*************9988763 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.43
      AAA_33  83 rerarflklarrlgvpvrivvvetdeetlkeRlakRaan 121
                 +++++f  + ++ g+++ri+  +td +   e+l++R a+
  CTQ26246.1 141 QQMDQFTIAQSQVGYADRILLTKTDVAGDTEKLRERLAR 179
                 445556555669999999999999988777777777654 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.1e-05     0.039       7      30 ..      10      33 ..       9      94 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-05
      AAA_22  7 ilvvtGesGtGKTtllrrlleqld 30
                ++++tG  G+GKTtllr +l++ +
  CTQ26246.1 10 VTLLTGFLGAGKTTLLRHILNEQH 33
                579*****************9975 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   9.3e-05     0.087       2      25 ..      12      55 ..      12     185 .. 0.66
   2 ?   -2.0   0.0       5.2   4.9e+03      48      94 ..     243     292 ..     218     314 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.3e-05
      AAA_18  2 lltGtpGvGKttlakeLskrl.gf...................g 25
                lltG  G+GKttl +++ ++  gf                   g
  CTQ26246.1 12 LLTGFLGAGKTTLLRHILNEQhGFkiavienefgevsvddqliG 55
                69*************99555547766666555555555555552 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.2
      AAA_18  48 eskrldedkldklldaleenss...aleegknlvidghlaeleseaakdi 94 
                 e  r+ e+ l +  ++l++        +e++ l+++g+   +  + ++ +
  CTQ26246.1 243 EVSRVMENLLLSFAEQLMRYKGmlwIDGEPNRLLFQGVQRLYSADWDRPW 292
                 44444444444444444444336555566666666666655555555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   0.00012      0.11      26      60 ..      10      44 ..       5      87 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
      AAA_16 26 lvllsGesGvGKsslvrellralekdggiflrgkc 60
                ++ll+G  G GK++l+r++l++  + ++ +++ ++
  CTQ26246.1 10 VTLLTGFLGAGKTTLLRHILNEQHGFKIAVIENEF 44
                589*****************855444555565555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.7e-05     0.054      13      67 ..      10      74 ..       4     186 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.7e-05
                EEEEEESTTSSHHHHHHHHTTSS--........SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS CS
                xxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkp........teGeilldgkdlke..qeleslrkeigvlpqe 67
                ++ ++G  GaGK+tLl+ ++++ +         + Ge+ +d++ + +  ++++ l +   +++  
  CTQ26246.1 10 VTLLTGFLGAGKTTLLRHILNEQHGfkiavienEFGEVSVDDQLIGDraTQIKTLTNGCICCTRS 74
                67899999************999877777777677777777777766555555555555555555 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.8e-05     0.055       2      25 ..      12      37 ..      11      78 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.8e-05
  Viral_helicase1  2 vvhGvpGcGKStlirkllrts..lil 25
                     +  G+ G+GK+tl+r++l+++   ++
       CTQ26246.1 12 LLTGFLGAGKTTLLRHILNEQhgFKI 37
                     6789***************9755333 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.2e-05     0.068       4      44 ..      13      51 ..      10      54 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.2e-05
        MobB  4 ivgksgsGKTtLleklipelkarglrvgtiKhahhgfdvdk 44
                ++g+ g+GKTtLl ++++e  ++g+++++i  +  +++vd+
  CTQ26246.1 13 LTGFLGAGKTTLLRHILNE--QHGFKIAVIENEFGEVSVDD 51
                78999***********996..89*******99999988886 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00013      0.12       2      49 ..      12      64 ..      11      72 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCS..SSSTTHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavakel...gvefleisgsell..skyvgesekkirel 49
                ll+G  G GKT+l + + +e    ++ ++e +  e+   ++++g+++ +i+ l
  CTQ26246.1 12 LLTGFLGAGKTTLLRHILNEQhgfKIAVIENEFGEVSvdDQLIGDRATQIKTL 64
                899*****************633346666666665554344588888777765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00013      0.12       4      45 ..      10      56 ..       9      92 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
      AAA_14  4 ilvitGaRrvGKTtllkqlikell.....vkkesilyinldderdkk 45
                + ++tG   +GKTtll+++++e+      v ++++ ++++dd+   +
  CTQ26246.1 10 VTLLTGFLGAGKTTLLRHILNEQHgfkiaVIENEFGEVSVDDQLIGD 56
                5789****************999999988888899999999876543 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00034      0.32       9     121 ..      18     199 ..      10     286 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep..................................................... 54 
                 G+GKTtl+ +++    ++g++++++         ++ ++l +d+++                                                     
  CTQ26246.1  18 GAGKTTLLRHILN--EQHGFKIAVIENEFG--EVSVDDQLIGDRATqiktltngcicctrsneledalldlldsrdrgeiefdrlviectgmadpgpii 112
                 89******99988..889********8888..444468888888889999************************************************* PP

                 ...........................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHHHHHHHHHCTS-EEE CS
                 ...........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ...........................................dlkrllellealgkkkalllkiagvvlnrvdgeneetllkealeelkqrygvpvlg 110
                                                                                   +++l++ d    +++l+e l+++++  + p++ 
  CTQ26246.1 113 qtffshqvlcerylldgvialvdavhadqqmdqftiaqsqvgyA---------------------DRILLTKTDVAGDTEKLRERLARINA--RAPIYT 188
                 **********9999999999998888766333333333333330.....................45555555555556666666666665..666666 PP

                 EEE--CCHCCC CS
                 xxxxxxxxxxx RF
        CbiA 111 viprdeavaea 121
                 vi+ d +++++
  CTQ26246.1 189 VIHGDIDLSQL 199
                 66666665543 PP

>> YAcAr  YspA, cpYpsA-related SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.5   3.3e+03      19      45 ..     132     159 ..     128     161 .. 0.68
   2 ?    9.5   0.0     0.001      0.95       9      37 ..     165     192 ..     157     194 .. 0.85
   3 ?   -0.6   0.0       1.4   1.3e+03      57      66 ..     281     290 ..     278     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.5
       YAcAr  19 atLdklhaeapidmvlvhGga.kGaDrl 45 
                 a  d++ha   +d + +  ++   aDr+
  CTQ26246.1 132 ALVDAVHADQQMDQFTIAQSQvGYADRI 159
                 5579999998886555555554667776 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.001
       YAcAr   9 rdfadleliwatLdklhaeapidmvlvhG 37 
                    +d e ++++L ++ a+api  +++hG
  CTQ26246.1 165 DVAGDTEKLRERLARINARAPI-YTVIHG 192
                 557899***************8.*****9 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.4
       YAcAr  57 lvrfpaDwkr 66 
                 +  ++aDw+r
  CTQ26246.1 281 QRLYSADWDR 290
                 678*****87 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00022      0.21      17      39 ..       7      29 ..       1      43 [. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
      AAA_30 17 gdrvavltGpAGtGKttalkalr 39
                +  v++ltG  G+GKtt+l+++ 
  CTQ26246.1  7 PIAVTLLTGFLGAGKTTLLRHIL 29
                44699***************984 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00031       0.3      24      39 ..      10      25 ..       2      29 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00031
      AAA_29 24 atlltGpsGsGKSTll 39
                +tlltG  G+GK+Tll
  CTQ26246.1 10 VTLLTGFLGAGKTTLL 25
                79*************8 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00025      0.23      21      51 ..       9      39 ..       3      50 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
    ATPase_2 21 eiyfiYGpegsGKtaLlkeiienledkdkyv 51
                 + +++G  g GKt+Ll++i+++++  +  v
  CTQ26246.1  9 AVTLLTGFLGAGKTTLLRHILNEQHGFKIAV 39
                578899****************997766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2444.95
//
Query:       CTQ26247.1  [L=67]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-27   95.5   0.4    1.5e-27   95.4   0.4    1.0  1  Sel_put   Selenoprotein, putative


Domain annotation for each model (and alignments):
>> Sel_put  Selenoprotein, putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.4   8.6e-32   1.5e-27       2      62 .]       5      67 .]       4      67 .] 0.93

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 8.6e-32
     Sel_put  2 lrralrrvrqylrllvGepdYerYvehmrrhHpdkppmsereFfrerqdaryg..npggvRCC 62
                l +a ++++q++++l+G pdY++Yv hm+++Hpd+p m+++eFfrerq+aryg  ++ggvRCC
  CTQ26247.1  5 LGQAKKYLGQAAKMLIGIPDYDNYVTHMQTNHPDQPYMTYEEFFRERQQARYGgdGKGGVRCC 67
                67899************************************************8555555*** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 505.39
//
Query:       CTQ26248.1  [L=716]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     5e-161  535.8  24.6     5e-161  535.8  24.6    2.0  2  CstA           Carbon starvation protein CstA
      4e-34  117.5   4.6      4e-34  117.5   4.6    2.9  2  CstA_5TM       5TM C-terminal transporter carbon starvation C
  ------ inclusion threshold ------
        2.2    7.4   9.5       0.57    9.3   3.8    2.3  2  Peptidase_M56  BlaR1 peptidase M56


Domain annotation for each model (and alignments):
>> CstA  Carbon starvation protein CstA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  535.8  24.6  8.4e-165    5e-161       1     367 [.      34     403 ..      34     411 .. 0.98
   2 ?   -3.1   2.3      0.47   2.8e+03     165     202 ..     573     612 ..     562     681 .. 0.62

  Alignments for each domain:
  == domain 1  score: 535.8 bits;  conditional E-value: 8.4e-165
        CstA   1 mnavllvvvavvvfviayrfYgkfiakkvlklddkraTPaerledgkdyvptnklvlfghhFasiagagPlvGpvlAaqfGylPgllWilvGavfagav 99 
                 ++a+++vv++v+v+++ayr+Y+ +ia+kv+kld++r TPa   +dg +yvptn++vlfghhFa+iagagPlvGpvlAaq+GylPg+lW+l+G+v+agav
  CTQ26248.1  34 VSALWIVVASVSVYLVAYRYYSLYIAQKVMKLDPTRSTPAVINNDGLNYVPTNRYVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGTLWLLAGVVLAGAV 132
                 589************************************************************************************************ PP

        CstA 100 hDfvvlvasvrrkgkslgelakkelgkvakllallaillililvlavlalvvvkalaespaavfsviltipialllGvllrklrkg.vleasvigvvll 197
                 +Df+vl++s rr+g slge++k+e+g+v + +al+ ++li+i++lavlal+vvkalaesp++vf+v+ t+pial++G+++r+lr+g v e+svig+vll
  CTQ26248.1 133 QDFMVLFISSRRNGASLGEMIKQEMGPVPGSIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFLRPGrVGEVSVIGIVLL 231
                 *************************************************************************************************** PP

        CstA 198 llavvvgsev.eea.laelltlsketlaivlivYvfvAsvlPvwlllaPrdYlstflligtivllalgilvvapelklpavtefvdgegpvfagslfPl 294
                 ++++++g  + +++ ++ +lt++ +t++++li Y f+ + lPvwl+laPrdYl+tfl+ig+iv+lalgi++ +p+lk+pavt+++dg+gp+++g+lfP+
  CTQ26248.1 232 VASIWFGGVIaHDPyWGPALTFKDTTITFTLIGYAFISALLPVWLILAPRDYLATFLKIGVIVGLALGIVILNPDLKMPAVTQYIDGTGPLWKGALFPF 330
                 **********87779************************************************************************************ PP

        CstA 295 lfitiACGaiSGFHslvssgttskllekesdarlvgygamllEslvailalvaaavlepaayfalnsaaavlg 367
                 lfitiACGa+SGFH+l++sgtt+kll++e+dar++gygaml+Es+va++alvaa+++ep+ yfa+n++ a lg
  CTQ26248.1 331 LFITIACGAVSGFHALIASGTTPKLLANETDARFIGYGAMLMESFVAVMALVAASIIEPGLYFAMNTPPAGLG 403
                 *******************************************************************988665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.47
        CstA 165 viltipialllGvll..rklrkgvleasvigvvllllavv 202
                   ++  +al+lG+++  ++ r++ + ++vi  + lll+ +
  CTQ26248.1 573 NQMLAAVALVLGTVVlvKMQRTKYIWVTVIPAAWLLLCTT 612
                 4566667777775541144444566666665544444332 PP

>> CstA_5TM  5TM C-terminal transporter carbon starvation CstA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.9      0.34     2e+03      79     107 ..     176     205 ..     119     212 .. 0.72
   2 !  117.5   4.6   6.7e-38     4e-34       1     116 []     486     614 ..     486     614 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.34
    CstA_5TM  79 lLAalaLlvvtvwll.ktgrkalvtliPmv 107
                 +LA laL+vv ++    +g  +++  +P++
  CTQ26248.1 176 ILAVLALIVVKALAEsPWGVFTVCSTVPIA 205
                 678888887776665444555555556655 PP

  == domain 2  score: 117.5 bits;  conditional E-value: 6.7e-38
    CstA_5TM   1 aavaytfailfvalfalTtlDtatRlaRyilqellgelk...kkaltnkyvatliavalavllllwg............gintlWplFGaaNQlLAala 84 
                 + ++y+f ilf+alf+lT+lD++tR +R++lq+llg++    kk  t+++va +i +a +v l  wg            g+++lWplFG++NQ+LAa+a
  CTQ26248.1 486 MGFWYHFGILFEALFILTALDAGTRAGRFMLQDLLGNFVpflKK--TDSLVAGIIGTAGCVGL--WGyllyqgvvdplgGVKSLWPLFGISNQMLAAVA 580
                 579**********************************9998533..46778888888888888..777777889999999******************* PP

    CstA_5TM  85 Llvvtvwllktgr..kalvtliPmvfmlvvtlta 116
                 L+++tv+l+k++r  +++vt+iP++++l++t++a
  CTQ26248.1 581 LVLGTVVLVKMQRtkYIWVTVIPAAWLLLCTTWA 614
                 *********666668*****************98 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3     0.046   2.7e+02     105     138 ..      34      68 ..      24      75 .. 0.54
   2 ?    9.3   3.8   9.6e-05      0.57       9     135 ..     574     697 ..     566     703 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.046
  Peptidase_M56 105 llliWivgali...lllyliaallvlkkrfvrklgkl 138
                    ++++Wiv+a +   l++y+ ++l  + ++ v kl++ 
     CTQ26248.1  34 VSALWIVVASVsvyLVAYRYYSLY-IAQK-VMKLDPT 68 
                    566777777660003444444433.3444.5555544 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 9.6e-05
  Peptidase_M56   9 aaaiavllvlllrrilrrllsaiaaYalWlivllallipfipesavs...lpvkfetskinsaaskaplasaaskvlddkasalatdvkkvewkti 101
                    ++++av lvl    +++    ++ +Y +W++v+ a+ + +  + a+     + + +   ++  a+++++++aa   l +++ a  +++ + +  ++
     CTQ26248.1 574 QMLAAVALVLGTVVLVKM---QRTKY-IWVTVIPAAWLLLCTTWALGlklFSSNPQMEGFFFMAQQYKEKIAAGGELTAQQIANMNHIVVNNYTNA 665
                    455555555555555554...55566.777777666666655555554445566777777777888888777777777766655555555566666 PP

  Peptidase_M56 102 lkillliWivgalilllyliaallvlkkrfvrkl 135
                       +l +++v ++i  +y i+ +l+++++ vr  
     CTQ26248.1 666 GLSILFLVVVYSII--FYGIKTWLNVRNNKVRTD 697
                    44555555555555..9*********98866654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       880  (0.0490825); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 4978.01
//
Query:       CTQ26249.1  [L=207]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1648.57
//
Query:       CTQ26250.1  [L=273]
Description: AscBF operon repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2186.88
//
Query:       CTQ26251.1  [L=170]
Description: 4-hydroxyphenylacetate 3-monooxygenase reductase component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-26   93.0   0.1    2.1e-26   92.8   0.1    1.0  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.1   1.2e-30   2.1e-26       1     154 [.      14     162 ..      14     163 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 1.2e-30
                    HTTS-EE-EEEEE.EETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCCCCEEECT CS
  Flavin_Reduct   1 mrrvaqpvavvttsvpptsplgatlssftslsldPplvafslrlpsstadalkeagefvinllsesqealadafsqksgprtddksifagltwees 96 
                    m ++   v vvtt   +  + g+t+++++s++ +Pp v+++++ +s +  +++ +g+++in+l+++qe +a++f++++g  t ++  fa   w+++
     CTQ26251.1  14 MASLSAAVNVVTT-AGEAGRCGITATAVCSVTDTPPSVMVCINANSAMNPVFQGNGKLCINVLNHEQEIMARHFAGMTG-VTMEE-RFALSGWQQG 106
                    67788999*****.5555566*******************************************************999.66666.69999***** PP

                    CCCSEEETTCSEEEEEEEEEEECCTTEEEEEEEEEEEEESTTECTTBEECCCCCEEEE CS
  Flavin_Reduct  97 ptgapallgalasleCqvvgsvelgdhelfigeVvavkvgddadeepLlywrrryagl 154
                    + g p+l+g+lasle ++ +  ++g+h ++++e+ ++ ++ + +  +L+y++rr++ +
     CTQ26251.1 107 ALGQPVLKGSLASLEGEISQVQTIGTHLVYLVEIRNITLSPQGH--GLIYFKRRFHPV 162
                    ********************9999***************99855..8********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1213.73
//
Query:       CTQ26252.1  [L=520]
Description: 4-hydroxyphenylacetate 3-monooxygenase oxygenase component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-94  314.0   0.0    1.3e-93  313.6   0.0    1.1  1  HpaB_N    4-hydroxyphenylacetate 3-hydroxylase N terminal
    1.4e-64  216.9   0.0    2.1e-64  216.4   0.0    1.2  1  HpaB      4-hydroxyphenylacetate 3-hydroxylase C terminal
  ------ inclusion threshold ------
       0.19   11.5   0.0       0.41   10.4   0.0    1.5  1  DUF4588   Domain of unknown function (DUF4588)


Domain annotation for each model (and alignments):
>> HpaB_N  4-hydroxyphenylacetate 3-hydroxylase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.6   0.0   2.1e-97   1.3e-93       1     272 []      15     281 ..      15     281 .. 0.97

  Alignments for each domain:
  == domain 1  score: 313.6 bits;  conditional E-value: 2.1e-97
                 -HHHHHHHHHHS---EEETTEE-S-TTTSTTTHHHHHHHHHHHHHTTSTTTHHHHEEEE..T.TEEEEGGG----SHHHHHHHHHHHHHHHHHTTT--S CS
      HpaB_N   1 TgeeYlesLrdkgrevYvdGekVedvtthpafrpavrsvarlYdlahdpeykdlltatspet.gekvnrffhiprskeDllkkrkairelarktggclg 98 
                 TgeeYl+sL+d gre+Y+ Ge+V+dvtthpafr+a+ sva+lYd+ h+pe++d l + ++++ g+ +++ff++++s++Dl+++r+ai+e++r ++g++g
  CTQ26252.1  15 TGEEYLKSLQD-GREIYIYGERVKDVTTHPAFRNAAASVAQLYDALHKPEMQDSLCWGTDTGsGGYTHKFFRVAKSADDLRQQRDAIAEWSRLSYGWMG 112
                 8**********.******************************************999999988************************************ PP

                 --THHHHHHHHHHHHTGGGGG.G....GHHHHHHHHHHHHHHT--EEEEES--SS-TTS-GGGSSSTTSB-EEEEE-SSEEEEEEEEEEEE-.--SSEE CS
      HpaB_N  99 RcpdydalnalalvaaadvfekegtkeyaenfrkyleyvqendlvlthaitdpkgdRskrpseqedpdvyvrvveetddGivVrGakvlaTgaaladei 197
                 R+pdy+a++ +al+a++ ++      ++++n+r++++++qe+ l+++hai++p++dR+k+++e   +dvy++ ++etd+Gi+V+Gakv+aT++al++++
  CTQ26252.1 113 RTPDYKAAFGCALGANPAFYG-----QFEQNARNWYTRIQETGLYFNHAIVNPPIDRHKPADE--VKDVYIKLEKETDAGIIVSGAKVVATNSALTHYN 204
                 ******************896.....59********************************999..99******************************** PP

                 EE---SS-..TTSGGG-EEEEEETT-TTEEEEE------..-S..-TTT-TTTTT----EEEEEEEEEEEEGGGEEE CS
      HpaB_N 198 lvlptramlkeedkdyavafavpvdapGlklicresfed..kleesefdyplssrfdendalvvfDdVfVPwerVfl 272
                 ++   +a +  e+ d+a++f+ p+da+G+kli+r s+e+  ++ +s++dyplssrfdenda++v+D+V++Pwe+V++
  CTQ26252.1 205 MIGFGSAQVMGENPDFALMFVAPMDAEGVKLISRASYEMvaGATGSPYDYPLSSRFDENDAILVMDKVLIPWENVLI 281
                 *****888899****************************84466*******************************85 PP

>> HpaB  4-hydroxyphenylacetate 3-hydroxylase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.4   0.0   3.5e-68   2.1e-64       1     201 [.     288     489 ..     288     490 .. 0.98

  Alignments for each domain:
  == domain 1  score: 216.4 bits;  conditional E-value: 3.5e-68
                 HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTS-EE--HHHHHHHHHHHHHHH CS
        HpaB   1 agklveefaalhrqsyqgvirkavkldfliGlaalaaeanGiekfshvqeklgelialrellyalliaaeaeaekdpsGvylPdlllanaarvlvtrly 99 
                 ++++++e ++  ++  q+++r+avkldf++ l+++ +e++G+ +f++vq++lge++a+r++++al++++++ea+++ +G++lPd  +++++rv+++++y
  CTQ26252.1 288 CRRWTMEGGFARMYPLQACVRLAVKLDFITALLKRSLECTGTLEFRGVQADLGEVVAWRNMFWALSDSMCSEATPWVNGAWLPDHAALQTYRVMAPMAY 386
                 6889999******************************************************************************************** PP

                 HHHHHHHHHHHGGGGT----HHH.HHST.THHHHHHHT-BTT.B-HHHHHHHHHHHHHHHTSHHHHHHHHHHHHTT--HHHHHHHHHHHS--HHHHHHH CS
        HpaB 100 priveilqdiaGGglitlPsead.fknpeigpllekylrgsegvsaeeRvkllklawdltgsefggrhelyerhgaGspeaqriaiyrqydleekkelv 197
                 ++i++i++  + +gli+lPs+a+ ++np+i ++l ky+rgs+g+++ eR+k+lkl+wd++gsefggrhelye++++Gs+ ++r++++rq++ ++ ++ +
  CTQ26252.1 387 AKIKNIIERNVTSGLIYLPSSARdLNNPQIDQYLAKYVRGSNGMDHVERIKILKLMWDAIGSEFGGRHELYEINYSGSQDEIRLQCLRQAQSSGNMDKM 485
                 **********************99*********************************************************************999988 PP

                 HHHC CS
        HpaB 198 kkll 201
                  +++
  CTQ26252.1 486 MAMV 489
                 7765 PP

>> DUF4588  Domain of unknown function (DUF4588)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.9e-05      0.41      32      56 ..      44      68 ..      11      72 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.9e-05
     DUF4588 32 lFqnsAkAvAqLYkaaseaqqqkls 56
                 F+n+A +vAqLY a  + + q+  
  CTQ26252.1 44 AFRNAAASVAQLYDALHKPEMQDSL 68
                4************966666656555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3546.25
//
Query:       CTQ26253.1  [L=296]
Description: 4-hydroxyphenylacetate catabolism regulatory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-19   70.5   0.8    1.1e-19   70.5   0.8    2.0  2  HTH_18          Helix-turn-helix domain
      9e-12   44.8   0.1      3e-07   30.4   0.0    2.5  2  HTH_AraC        Bacterial regulatory helix-turn-helix protein
    1.7e-08   34.1   0.2    3.1e-08   33.2   0.2    1.4  1  Cupin_2         Cupin domain
    1.3e-05   25.1   6.4    1.4e-05   25.1   4.0    2.2  2  AraC_binding    AraC-like ligand binding domain
    6.4e-05   22.8   1.3     0.0075   16.0   1.3    2.2  1  Cupin_6         Cupin
     0.0029   17.3   1.3     0.0052   16.5   1.3    1.4  1  AraC_binding_2  AraC-binding-like domain
  ------ inclusion threshold ------
       0.13   11.3   0.0       0.18   10.9   0.0    1.2  1  tRNA-synt_2     tRNA synthetases class II (D, K and N)


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.3   3.3e+03      54      68 ..      23      37 ..      21      41 .. 0.81
   2 !   70.5   0.8   4.2e-23   1.1e-19       1      80 [.     212     290 ..     212     291 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.3
                HTT-S-HHHHHHHHH CS
      HTH_18 54 alGFsdlsrFsrafr 68
                ++ +++ sr++++f 
  CTQ26253.1 23 EVHYQSFSRMAAFFG 37
                678999999999996 PP

  == domain 2  score: 70.5 bits;  conditional E-value: 4.2e-23
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +a++l++++++L+ +++r+ + +pk+++ ++ l++A+rlLl  ++  v eiA++lGF+d+++F+r+f +  g++Ps yr+
  CTQ26253.1 212 YARELHLTESRLTDICRRFANRSPKRLIFDRQLREAKRLLLF-SDSAVNEIAWQLGFKDPAYFARFFSRQVGCSPSSYRA 290
                 79***************************************7.************************************7 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   5.9e-05      0.15       4      41 ..     202     239 ..     199     240 .. 0.94
   2 !   30.4   0.0   1.2e-10     3e-07       7      41 ..     254     289 ..     251     290 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.9e-05
                 CCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   4 nlstnltiediAdelgfSrsyFsrlFkketGmtPsqyr 41 
                 ++++ +t+ d A el++ +s ++ ++++  + +P+  +
  CTQ26253.1 202 HYHQHWTVPDYARELHLTESRLTDICRRFANRSPKRLI 239
                 99********************************9876 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 1.2e-10
                 CT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   7 tnltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                 ++  +++iA +lgf ++ yF r F++++G++Ps+yr
  CTQ26253.1 254 SDSAVNEIAWQLGFkDPAYFARFFSRQVGCSPSSYR 289
                 56899******************************9 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.2   1.2e-11   3.1e-08       9      70 ..      38      99 ..      36     100 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.2e-11
                EEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2  9 esapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllvv 70
                ++ ++hrH++  ++ y   G++el++d++++ ++a  +v++p+ +pH+f+ ++d + ++l v
  CTQ26253.1 38 RDMQAHRHDRYFQMHYLDTGQIELQLDDHRYSVQAPLFVITPPSVPHAFITESDSDGHVLTV 99
                56789***************************************************999987 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   4.0   5.3e-09   1.4e-05      15     109 ..      39     137 ..      33     189 .. 0.77
   2 ?   -3.3   0.0         3   7.7e+03     100     114 ..     203     217 ..     192     232 .. 0.62

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 5.3e-09
                   SEEEETT-.SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG.---EEETTEEE......E---TT CS
  AraC_binding  15 sfpphvhd.eyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegellerile.dssilagapllpa....lledee 105
                   +++ h+hd +++ hy   G+  l+l++++y +++   ++ pp +pH +  +s  +   ++l+++ el++ +le  ++++++  +lp+    l + ++
    CTQ26253.1  39 DMQAHRHDrYFQMHYLDTGQIELQLDDHRYSVQAPLFVITPPSVPHAFITES--DSDGHVLTVHEELIWPLLEvLYPGTRETFGLPGiclsLADKPD 133
                   6789************************************************..9999999999999999987223333333333335555444444 PP

                   THHH CS
  AraC_binding 106 laql 109
                    +++
    CTQ26253.1 134 ELAA 137
                   4444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3
                   E---TTTHHHHHHHH CS
  AraC_binding 100 lledeelaqllralf 114
                   +++++++ +  r+l+
    CTQ26253.1 203 YHQHWTVPDYARELH 217
                   444444444444444 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.3   2.9e-06    0.0075     130     181 ..     121     174 ..      27     175 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.9e-06
     Cupin_6 130 LPrvlvv.aae.eaapelrallellaaElardrpGsqavldrLldlLlvqaLRa 181
                 LP + +  a++ ++ + l++  +l+++E++++ pG++  l+ L++ ++  +LR 
  CTQ26253.1 121 LPGICLSlADKpDELAALAHYWQLIRRESTAQLPGREHTLALLAQAVFTLLLRN 174
                 6777777677767899*************************************6 PP

>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.3     2e-06    0.0052      50     172 .]      44     172 ..      24     172 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2e-06
  AraC_binding_2  50 selddfylvqlplsGraeveqggrevvlgpgdavvldpgrpyrlrwsadceqlvlrip....ralLerplra.plrfa.prldldsgag....al 134
                     ++ d ++++++   G+ e++ +++++ +++  +v+  p+ p  + ++ d++ +vl++       lLe    + +  f+ p+++l+ +      a+
      CTQ26253.1  44 RH-DRYFQMHYLDTGQIELQLDDHRYSVQAPLFVITPPSVPHAFITESDSDGHVLTVHeeliWPLLEVLYPGtRETFGlPGICLSLADKpdelAA 137
                     33.66*****************************************************7777677774444337777788888876555333355 PP

  AraC_binding_2 135 wrrllrslvaelaelgpalasspllaaqleeLlaslLl 172
                     ++++ + + +e      +l+ +++++a l++++ +lLl
      CTQ26253.1 138 LAHYWQLIRREST---AQLPGREHTLALLAQAVFTLLL 172
                     5555555555553...5799999999999999999986 PP

>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.9e-05      0.18     168     246 ..      48     116 ..      10     119 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.9e-05
                  -EEEEHHHHHHHHHTS-SS--HHHHHHHHHHS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 168 fkrltykeaieklneigkdldkaderalvkkeknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslR 246
                  + +++y ++ ++      +l+ +d r++v+     p+fv+  P+  + F +++++d + lt + +l+++ +E++   +R
   CTQ26253.1  48 YFQMHYLDTGQI------ELQLDDHRYSVQ----APLFVITPPSVPHAFITESDSDGHVLTVHEELIWPLLEVLYPGTR 116
                  445555555555......789999999999....***********************************9999765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2260.92
//
Query:       CTQ26254.1  [L=452]
Description: putative tartrate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-50  170.6  48.2    2.1e-49  168.3  36.1    2.0  2  MFS_1     Major Facilitator Superfamily
    3.9e-06   26.4  27.9    1.3e-05   24.7   9.6    2.0  2  MFS_4     Uncharacterised MFS-type transporter YbfB
    0.00043   19.0   0.4    0.00043   19.0   0.4    3.9  4  ATG22     Vacuole effluxer Atg22 like


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.3  36.1   3.6e-53   2.1e-49       1     353 []      32     398 ..      32     398 .. 0.91
   2 !   16.1   4.2   6.8e-07    0.0041     118     180 ..     378     438 ..     372     450 .. 0.83

  Alignments for each domain:
  == domain 1  score: 168.3 bits;  conditional E-value: 3.6e-53
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 l++++++s+l+r ++g+a   ++++dlg++ + +gl++tl+++++++  +p   +  ++G+rr++   ++++++++++ +f ++++ +l++lr+l G++
  CTQ26254.1  32 LFVLFVFSFLDRINIGFAGL-TMGKDLGLTSTMFGLAATLFYVTYVLCGIPSNIMLAKVGARRWIAGIMVVWGIASTCTMF-ATSPhTLYILRMLVGIA 128
                 57889999999999999999.******************************************************999999.899999*********** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee... 188
                 +++++p+++++++ wfp  +r+ra++l+++++ + ++lg +l+g+++++ g      W+++f++ ++ s++++v+ +++l ++p +  +   +e+    
  CTQ26254.1 129 EAGFLPGILVYLTWWFPAYHRARANALFMIAMPVTMMLGSILSGYILALDGlwnlkgWQWLFLLEGLPSVVLGVVTWFFLNDTPDKANWLDNEEKQalk 227
                 ***********************************************888899*********************8777776666666555555555799 PP

       MFS_1 189 ....kgtgpaplvp.....awkallkdpvlwillialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrrr 276
                       +++a++vp      ++++l++ vl+ + +a ++ +  +s++ +++p +  + ++ +  + +++gll a++++ +++++++++r sdr  r+ r
  CTQ26254.1 228 amidREREHAAIVPasprsTLREVLTPAVLM-YTLAYFCLTNTLSAINIWTPQI-LQSFNTGssN-IMIGLLAAIPQFCTIFGMIWWSRRSDR--RKER 321
                 99995555555555666668********997.55555555569**********7.8888888877.9**************************..7779 PP

       MFS_1 277 lllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                  + ++l  l+aa+g++l+++t+++++ l++++++++g++++++++++  +++++ + ++ a++++n +g++g+a++p
  CTQ26254.1 322 KMHTILPYLFAAAGWLLASATHHSLIQLIGIIMASVGSFTAMAIFWTTPDRVISLQSRAVALAVINAIGNVGSAVSP 398
                 9*************************************************************************998 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 6.8e-07
       MFS_1 118 ergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperk 180
                  r+ a+++++a  ++G+++ pll g+l  + +++++  +++a++++++++   +l + + ++r+
  CTQ26254.1 378 SRAVALAVINAIGNVGSAVSPLLIGILRdTTGSFSSGLWFVAGLLIVGAL---VLTRIPMSQRE 438
                 6999************************78888***************88...55555555444 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5  10.8   0.00036       2.2      19     177 ..      53     216 ..      52     230 .. 0.73
   2 !   24.7   9.6   2.1e-09   1.3e-05     168     362 ..     229     429 ..     223     430 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00036
       MFS_4  19 llaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAv....vlvfgsslv.lahaaa 112
                 + ++++l+ +  gl a+  y+ Y +  +   + l++  +R  + + +++  ++    ++++s  ++ ++R+l G+a A     +lv  + +    h a 
  CTQ26254.1  53 MGKDLGLTSTMFGLAATLFYVTYVLCGIPSNIMLAKVGARRWIAGIMVVWGIASTCTMFATSPHTLYILRMLVGIAEAGflpgILVYLTWWFpAYHRAR 151
                 778999*****************9999999999999999998888887777777766777778888899*********722224566666653334344 PP

       MFS_4 113 arrervgallfaGvGlGiavsgllvll.llqlglsasslWlalavlsavllllvalllpraalrea 177
                 a++ +++a+      lG ++sg + +l +l    ++++l l+ ++ s+vl ++ +  l+ ++ ++ 
  CTQ26254.1 152 ANALFMIAMP-VTMMLGSILSGYILALdGLWNLKGWQWLFLLEGLPSVVLGVVTWFFLNDTPDKAN 216
                 4444444444.45678988888776661555566678889999999*****999999996665554 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 2.1e-09
       MFS_4 168 llpraalreasaaaeaakaeqk..slpllalllaYglaGfGYiitatFlvaiardg..aggalleallWllvGlaaivgvlvwlrvakrsglrralaa. 261
                 ++ r+++++a  +a ++ ++++  + ++l ++laY++    + ++  + ++i ++   + ++++  ll  +     i g+  w r+++r++ r++ ++ 
  CTQ26254.1 229 MIDREREHAAIVPASPRSTLREvlTPAVLMYTLAYFCLTNTLSAINIWTPQILQSFntGSSNIMIGLLAAIPQFCTIFGMIWWSRRSDRRKERKMHTIl 327
                 44566667777777776665551144688999********************99854456667777777777788888887777777777777666652 PP

       MFS_4 262 allieavgvllsllspsplglivssvllG.ltflaitalvlqlarelappatrrllglmTasfgigQilGpllasllaeatgslalallvaaaalvlaa 359
                  +l  a+g ll+ + +  l  +++ ++   + f+a+  + ++  r ++ +++  +l+++ a+  +g ++ pll+++l ++tgs+++ l   a++l+++a
  CTQ26254.1 328 PYLFAAAGWLLASATHHSLIQLIGIIMASvGSFTAMAIFWTTPDRVISLQSRAVALAVINAIGNVGSAVSPLLIGILRDTTGSFSSGLWFVAGLLIVGA 426
                 69999999999988888889999999876257888888999999*********************************************99******99 PP

       MFS_4 360 liv 362
                 l++
  CTQ26254.1 427 LVL 429
                 875 PP

>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.9      0.17   9.9e+02     104     131 ..      95     122 ..      52     218 .. 0.60
   2 !    7.0   2.1   0.00032       1.9     281     355 ..     253     328 ..     185     338 .. 0.82
   3 ?    1.4   2.0     0.016        97     313     342 ..     337     366 ..     323     389 .. 0.73
   4 !   19.0   0.4   7.2e-08   0.00043     424     473 ..     388     437 ..     382     442 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.17
       ATG22 104 lLlafaligslstilfllvtpkkYllga 131
                 +  ++++ g++st  + + +p++ +++ 
  CTQ26254.1  95 IAGIMVVWGIASTCTMFATSPHTLYILR 122
                 3333333333333333333333333333 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00032
       ATG22 281 lkdvllfLvawfllsdgiatvss.tavlfaktelkmstaklillsivaviaavlGaflwplvsrrlnlktkktlla 355
                  + vl++ +a+f l   ++ ++  t  ++++ + + s++ ++ll  + ++++++G + w++ s r + +  +t+l 
  CTQ26254.1 253 TPAVLMYTLAYFCLTNTLSAINIwTPQILQSFNTGSSNIMIGLLAAIPQFCTIFGMIWWSRRSDRRKERKMHTILP 328
                 47899***************87626677788889999***********************8888877776666654 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.016
       ATG22 313 lkmstaklillsivaviaavlGaflwplvs 342
                 l  s+++  l++++ +i+a +G+f+ +++ 
  CTQ26254.1 337 LLASATHHSLIQLIGIIMASVGSFTAMAIF 366
                 5567777999**************999775 PP

  == domain 4  score: 19.0 bits;  conditional E-value: 7.2e-08
       ATG22 424 itdkgssvigplivglItDrtgnirsafvflavLlvvplpllllvdverg 473
                  ++  +s + pl++g++ D tg+ +s+++f+a Ll+v+  +l ++++++ 
  CTQ26254.1 388 AIGNVGSAVSPLLIGILRDTTGSFSSGLWFVAGLLIVGALVLTRIPMSQR 437
                 567789999**********************************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3438.76
//
Query:       CTQ26255.1  [L=265]
Description: putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid-like aldolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-68  227.7   0.0      1e-67  227.5   0.0    1.0  1  HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
  ------ inclusion threshold ------
       0.11   11.3   0.0       0.17   10.7   0.0    1.2  1  PK         Pyruvate kinase, barrel domain


Domain annotation for each model (and alignments):
>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.5   0.0   1.1e-71     1e-67       1     219 [.      15     240 ..      15     242 .. 0.99

  Alignments for each domain:
  == domain 1  score: 227.5 bits;  conditional E-value: 1.1e-71
                 EEEEEEESTSHHHHHHHCTC--SEEEEESSTSSSHHHHHHHHHHHHHHHHHHHHCTTTSSEEEEE-SSTTHHHHHHHGGHHHTTSSEEEESS--SHHHH CS
   HpcH_HpaI   1 riglflpganaalaekaaiagaDsvliDlEdavalaeKdaARvlvsealkqldalaaaasevvVRvnsldselikqdlevldlgaqvvlvPkvetaeea 99 
                 +igl+l ++++++ae +a+ag+D++liD+E+a+         ++v+++l+ql+a+a ++s++vVR++++d++ ikq   +ld gaq++lvP+v++aeea
  CTQ26255.1  15 QIGLWLGLCSSYSAELLAGAGFDWLLIDGEHAP---------NNVPTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQ---LLDVGAQTLLVPMVQNAEEA 101
                 79*******************************.........**********************************...******************** PP

                 HHHHHHTSHTTTS---....................HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTT-TTSTTSHHHH....HHHH CS
   HpcH_HpaI 100 levvsalrepekgirg....................anketrllaqiEsaegvknaeeIaavegldgvflGaeDlsadlgtkrspegtevl....dare 174
                 + +v+a+r+p++girg                    an+ +++l+qiE++e++kn+++I++v+g+dgvf+G++Dlsad+g+ ++p+++ev+    da++
  CTQ26255.1 102 RLAVRATRYPPAGIRGvgsalarasrwnrvpdyihqANDAMCVLVQIETREALKNLPQILDVDGVDGVFIGPADLSADMGHGGNPQHPEVQaaieDAIQ 200
                 *************************************************************************************************** PP

                 HHHHTTHCEEEEEEE.E-SSHHHHHHHHHTTHCEEEEEEHHHHHH CS
   HpcH_HpaI 175 riltaaraagiaaldtvasdiddaegflaegalfvalGfdgklli 219
                 +i++a++a gi     ++++++ a+++l+ galfva+G+d++ll+
  CTQ26255.1 201 QIRQAGKAPGI-----LMANEQLAKRYLELGALFVAVGVDTTLLA 240
                 ***********.....*************************9986 PP

>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.9e-05      0.17     200     276 ..     124     208 ..     118     218 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.9e-05
                 SHHHHHHHHHHHTCCCTTSEEEEEE-SCHHHHTHHHHHHH..SSEEEEEHHHHHHHSTC......CCHHHHHHHHHHHHHHHT-- CS
          PK 200 kasDvkevrevleeegkeikiiakienqegvenldeilea..sDgimvarGDlGieipa......ekvllvqkklikkcnlagkp 276
                 +as  ++v + +++++  + ++ +ie +e+++nl +il +   Dg+ +   Dl  +++       ++v ++    i++ ++agk+
  CTQ26255.1 124 RASRWNRVPDYIHQANDAMCVLVQIETREALKNLPQILDVdgVDGVFIGPADLSADMGHggnpqhPEVQAAIEDAIQQIRQAGKA 208
                 566677888889999999*******************987446******999988875322221256666666678888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1999.29
//
Query:       CTQ26256.1  [L=267]
Description: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-07   29.1   0.0    9.3e-07   28.7   0.0    1.1  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   5.2e-11   9.3e-07      21     216 ..      75     265 ..      58     267 .] 0.82

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 5.2e-11
                    -SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE......EEEEEEEESS-B--T....--HHHHHTTEEEEEEEEEEE-SBGGG---..HH..HH CS
  FAA_hydrolase  21 eeppdrhiplepvfflkrasslvgpgdpirrPagsekldyEvELavvigkplrev....lsveeAedaiaGytllnDvsaRdlqaeek.apl..gw 109
                     + pd+++ l ++ff+  ++    p d+  +P++      EvELa+v+ kplr++    ++v +A d++   + l D  ++++  e + ++   ++
     CTQ26256.1  75 ISEPDYGALLDDMFFHDGSD---IPTDRFIVPRI------EVELAFVLAKPLRGPnctlFDVYNATDYVIPALELIDARCHNIDPETQrPRKvfDT 161
                    44555666666666666666...34466677777......**********999999999999*******************999888854446777 PP

                    HHTGGGEEEEEE-B--B-.STT---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH.....-B-TT-EEEEEES.......S--EE--TT CS
  FAA_hydrolase 110 flgksfdtftpiGpwivtpdeledpedlelrlrvngeevqdsntkdmifspaeliahlsagl.....tLepGdliltGTpsgvgaeeeslkflkdg 200
                    + +++ +    +G   ++pdel d + ++  l  ng+    + ++  + +pa+ +a+l++ l     +Le+G +il G+        ++++  ++g
     CTQ26256.1 162 ISDNAANAGVILGGRPIKPDEL-DLRWISALLYRNGVIEETGVAAGVLNHPANGVAWLANKLapydvQLEAGQIILGGSF-------TRPVPARKG 249
                    7777777777777777799999.67888888888********99*************9988889999*************.......67999**** PP

                    -EEEEEETTTEEEEEE CS
  FAA_hydrolase 201 DeveveieglGelrnr 216
                    D+  v+ +++G++  r
     CTQ26256.1 250 DTFHVDYGNMGAISCR 265
                    ******9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2059.85
//
Query:       CTQ26257.1  [L=126]
Description: 5-carboxymethyl-2-hydroxymuconate Delta-isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-50  170.0   0.0    2.7e-50  169.8   0.0    1.0  1  CHMI      5-carboxymethyl-2-hydroxymuconate isomerase


Domain annotation for each model (and alignments):
>> CHMI  5-carboxymethyl-2-hydroxymuconate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   0.0   1.5e-54   2.7e-50       1     124 []       2     125 ..       2     125 .. 0.99

  Alignments for each domain:
  == domain 1  score: 169.8 bits;  conditional E-value: 1.5e-54
                 -EEEEEEETTSS.S--HHHHHHHHHHHHHT-TTS-GGG-EEEEEEESSEEETTSS-T-EEEEEEEEEES---HHHHHHHHHHHHHHHHHHHHHHHTTS- CS
        CHMI   1 PHliieysanleeeadieaLleklaevllatgvfplgGiRvrairlddyavADgkeddaFvhltlkigaGRseevkkeagealfaalkahlaelfakry 99 
                 PH+i e+++n++e+ad++ L++k++e+l+atg+fp+gGiR+ra++ld++++ADg++d+aFvh+tlkigaGRs e ++++g+ lfa++k+h+a+l+++ry
  CTQ26257.1   2 PHFIAECTDNIREQADLPGLFAKVNEALAATGIFPIGGIRSRAHWLDTWQMADGRQDYAFVHMTLKIGAGRSLESRQDVGDMLFALIKSHFATLMESRY 100
                 9************************************************************************************************** PP

                 EEEEEEEEEE-GGGEEEEESCTTCG CS
        CHMI 100 lalsleieeideelsykknniharl 124
                 lals+ +ee+d++l+yk+nn+ha++
  CTQ26257.1 101 LALSFAMEELDPTLNYKQNNVHALF 125
                 **********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 980.89
//
Query:       CTQ26258.1  [L=285]
Description: 3,4-dihydroxyphenylacetate 2,3-dioxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-84  282.6   0.0    2.9e-84  282.4   0.0    1.0  1  LigB      Catalytic LigB subunit of aromatic ring-opening dio


Domain annotation for each model (and alignments):
>> LigB  Catalytic LigB subunit of aromatic ring-opening dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.4   0.0   1.6e-88   2.9e-84       2     272 ..       7     279 ..       6     280 .. 0.99

  Alignments for each domain:
  == domain 1  score: 282.4 bits;  conditional E-value: 1.6e-88
        LigB   2 alllsHvppilaavdgkeqealrekvikgyesireriaeksPdtiivvsphhltdvnpvfvlgvaeefeaiddfg...kflprleyelkgnpeLaekia 97 
                 a++++Hvp++++++ +++++++r+ +i+g+++i++r++e+++dtiiv+++h+l+  n+++++++a++f+++++++   +f+++++y+++gnpeL++ ia
  CTQ26258.1   7 AAKITHVPSMYLSELPGKNHGCRQGAIDGHKEIGKRCREMGVDTIIVFDTHWLV--NSAYHINCADHFQGVYTSNelpHFIRDMTYDYDGNPELGQLIA 103
                 689***************************************************..999**************************************** PP

        LigB  98 ealkksgidlav.esnsmklDHGtlvPLelmlpdeakvpvikvslntvaypllsferlykLGeAlrkaveeldknvlilgsGglsHqlegdeaakadaq 195
                  +++k g+++++ +++s+kl++GtlvP+++m++    ++++kv+++++++++++f++++kLGeA+ ka++++d++v++l+sG+lsH++ +d++a++ ++
  CTQ26258.1 104 DEAVKLGVRAKAhNIPSLKLEYGTLVPMRYMNS----DKHFKVVSISAFCTVHDFADSRKLGEAILKAIDKYDGTVAVLASGSLSHRFIDDQRAEEGMN 198
                 ***********999*******************....8************************************************************* PP

        LigB 196 ..tlllneefdeelldllkegrveelckmskeelsaaagheeeelvplvvalGalsgd....kaelrkelvsyeglpavsavf 272
                   t++++ ++de+++ l++eg+++e+c m +e+++ ++  +e++++++v++lG+l++d    k+e+++el+ ++g+++v+avf
  CTQ26258.1 199 syTREFDHQMDERVVKLWREGKFKEFCTMLPEYADYCY--GEGNMHDTVMLLGLLGWDkydgKVEFITELFASSGTGQVNAVF 279
                 9999*********************************8..9*****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2256.01
//
Query:       CTQ26259.1  [L=488]
Description: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-171  570.9   0.0   1.7e-171  570.8   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
       0.15   11.4   0.0        2.9    7.3   0.0    2.1  2  DUF1487   Protein of unknown function (DUF1487)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  570.8   0.0  1.9e-175  1.7e-171       7     462 .]      17     474 ..       7     474 .. 0.98

  Alignments for each domain:
  == domain 1  score: 570.8 bits;  conditional E-value: 1.9e-175
                 SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHHH CS
      Aldedh   7 etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyaela 104
                 + ++++nPatgev+a+v++++++++++avaaAkeaf++wa+lp++eRa+++r++ dl+ ++  e+a++et++tG p++++++  +++a + ++++ae +
  CTQ26259.1  17 DYFHTTNPATGEVLAEVASGGEAEINQAVAAAKEAFPKWANLPMKERARLMRRLGDLIDQNVPEIAAMETADTGLPIHQTKNvLIPRASHNFEFFAEVC 115
                 34899*****************************************************************************9**************** PP

                 HHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH- CS
      Aldedh 105 eklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealveh 203
                 ++++g++ p+++++l+++  +P+Gv+++++PWN+P+++a+wk+ap+la GNt vlK +e +pl+a +l el+ eag+P+gvlnvv+g+g+++g+alv+h
  CTQ26259.1 116 QQMNGKTYPVDDKMLNYTLVQPVGVCALVSPWNVPFMTATWKVAPCLALGNTAVLKMSELSPLTADRLGELALEAGIPAGVLNVVQGYGATAGDALVRH 214
                 **********99*************************************************************************************** PP

                 TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TT CS
      Aldedh 204 pevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpl 302
                  +v++vsftG+t++gr+i+k+a+  lk+ ++ElGGk+p++++edaD+++a++a+++ +f+ +G++C+a+sr+++q+siy efv++++e+a++l+vgdp 
  CTQ26259.1 215 HDVRAVSFTGGTATGRNIMKNAG--LKKYSMELGGKSPVLIFEDADIERALDAALFTIFSINGERCTAGSRIFIQQSIYPEFVKRFAERANRLRVGDPT 311
                 ***********************..9************************************************************************* PP

                 STT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT....E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEES CS
      Aldedh 303 dedtdvGPliseaqlekvekyveeakeegaklllGge....reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGL 397
                 d++t++G+lis+++ ekv +y+  ++eega+ll Gg+       a+l+ g+f++Ptvla+v++ mr+aqeEiFGPV+++++fkde+e +++aNd eyGL
  CTQ26259.1 312 DPNTQIGALISQQHWEKVSGYIRLGIEEGATLLAGGAdkpsDLPAHLKAGNFLRPTVLADVDNRMRVAQEEIFGPVACLLPFKDEAEGLRLANDVEYGL 410
                 ************************************98877668899**************************************************** PP

                 EEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 398 aagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 a++++t+d+++++r+a+ +eaG+v +N++++ +  + pfgGvk+Sg+Gregg++++e + e+k+v
  CTQ26259.1 411 ASYIWTQDVSKVLRLARGIEAGMVFVNTQNVRDLRQ-PFGGVKASGTGREGGEYSFEVFAEMKNV 474
                 ***********************************9.**************************87 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00032       2.9       9      60 ..     252     305 ..     248     315 .. 0.82
   2 ?    1.7   0.0     0.016   1.5e+02     136     171 ..     405     441 ..     385     452 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00032
     DUF1487   9 vifedgDlnsalealvesl..kePfaegavatvlveesirdefvervrsklkpl 60 
                 +ifed+D++ al+a + ++  ++   + a   +++++si  efv+r +++ ++l
  CTQ26259.1 252 LIFEDADIERALDAALFTIfsINGERCTAGSRIFIQQSIYPEFVKRFAERANRL 305
                 69**********98887772235556667779**************99998887 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.016
     DUF1487 136 slkfa.svsvwneklaavyelvarlnvdvftiNCakv 171
                  +++  + ++w + +++v  l+  ++  ++++N  +v
  CTQ26259.1 405 DVEYGlASYIWTQDVSKVLRLARGIEAGMVFVNTQNV 441
                 344431348************************8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3891.95
//
Query:       CTQ26260.1  [L=254]
Description: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-62  208.7   0.0    9.6e-62  208.5   0.0    1.1  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.5   0.0   5.4e-66   9.6e-62       3     217 ..      47     243 ..      45     244 .. 0.95

  Alignments for each domain:
  == domain 1  score: 208.5 bits;  conditional E-value: 5.4e-66
                    EEEEEE--SHHHHHTTT.-SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE......EEEEEEEESS-B--T--HHHHHTTEEEEEEEEEEE-SB CS
  FAA_hydrolase   3 vcdglnyaehvreagkaaeeppdrhiplepvfflkrasslvgpgdpirrPagsekldyEvELavvigkplrevlsveeAedaiaGytllnDvsaRd 98 
                    ++ glnya+h+ e++    +pp      ep +f+k +++++g++++ +rP+ +e ++yE+EL+vvigk +r+v s +eA+d++aGyt++nD+  Rd
     CTQ26260.1  47 FALGLNYADHASELE---FKPPT-----EPLVFIKAPNTFIGHQQQSVRPDNVEYMHYEAELVVVIGKTARRV-SEAEAMDYVAGYTVCNDYAIRD 133
                    7899*********96...45666.....677******************************************.9********************* PP

                    GGG---.HHHHHHTGGGEEEEEE-B--B-.STT---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH-B-TT-EEEEEES.......S-- CS
  FAA_hydrolase  99 lqaeekaplgwflgksfdtftpiGpwivtpdeledpedlelrlrvngeevqdsntkdmifspaeliahlsagltLepGdliltGTpsgvgaeeesl 194
                      ++ +   + ++ ks+dt tpiGpwiv++++++dp++l+lr++vnge +q+++t+d+ifs++ lia+ls+++tL+pGd+i+tGTp+g +      
     CTQ26260.1 134 YLENYYR--PNLRVKSRDTLTPIGPWIVSKEAIPDPHNLALRTWVNGELRQQGTTADLIFSIPFLIAYLSEFMTLQPGDMIATGTPKGLS------ 221
                    *988883..8899*************************************************************************8855...... PP

                    EE--TT-EEEEEETTTEEEEEEE CS
  FAA_hydrolase 195 kflkdgDeveveieglGelrnrV 217
                      + +gDev ve+eg+G+l n++
     CTQ26260.1 222 -DVVPGDEVIVEVEGVGRLVNHI 243
                    .49*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1930.04
//
Query:       CTQ26261.1  [L=210]
Description: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-41  141.2   0.0    4.4e-41  141.0   0.0    1.0  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.0   0.0   2.4e-45   4.4e-41       2     218 .]       5     204 ..       4     204 .. 0.95

  Alignments for each domain:
  == domain 1  score: 141.0 bits;  conditional E-value: 2.4e-45
                    EEEEEEE--SHHHHHTTT.-SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE......EEEEEEEESS-B--T--HHHHHTTEEEEEEEEEEE-S CS
  FAA_hydrolase   2 ivcdglnyaehvreagkaaeeppdrhiplepvfflkrasslvgpgdpirrPagsekldyEvELavvigkplrevlsveeAedaiaGytllnDvsaR 97 
                    i++++ln+++ +  +++a +++p+++ p++ v f+k++++++g+g+ i++P+g e ++  + +a+++gk +r+v ++eeA+++iaGy+l+nDvs  
     CTQ26261.1   5 IFAVALNHRSQLDAWREAFQQAPYKTPPKTAVWFIKPRNTVIGDGEAIPYPQG-ETVQSGATVALIVGKTARKV-AAEEAANYIAGYALANDVSLP 98 
                    899**************************************************.789*****************.9******************97 PP

                    BGGG---.HHHHHHTGGGEEEEEE-B--B-.STT---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH-B-TT-EEEEEES.......S- CS
  FAA_hydrolase  98 dlqaeekaplgwflgksfdtftpiGpwivtpdeledpedlelrlrvngeevqdsntkdmifspaeliahlsagltLepGdliltGTpsgvgaeees 193
                    +  +      + +++k++d+f+piG+      ++++ +dl++ + +ng e  +++t d+  + a+l++ ls++ tL+pGd il GTp       +s
     CTQ26261.1  99 EESFYR----PAIKAKCRDGFCPIGTLS----AVRNVDDLTIITEINGREADSWHTGDLQRNAAQLLSALSEFATLNPGDAILIGTP-------HS 179
                    766665....5899***********997....788889*************************************************.......56 PP

                    -EE--TT-EEEEEETTTEEEEEEE. CS
  FAA_hydrolase 194 lkflkdgDeveveieglGelrnrVa 218
                    ++ l++gD+v++ ++g+ +l+n+V+
     CTQ26261.1 180 RVTLRPGDRVRILADGFPALENPVV 204
                    89********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1660.31
//
Query:       CTQ26262.1  [L=82]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 676.47
//
Query:       CTQ26263.1  [L=146]
Description: Homoprotocatechuate degradative operon repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-15   55.6   0.1    5.3e-15   55.1   0.1    1.3  1  MarR       MarR family
    3.2e-06   26.9   0.1    6.8e-06   25.9   0.1    1.6  2  MarR_2     MarR family
     0.0078   16.7   0.0      0.015   15.8   0.0    1.5  1  HTH_27     Winged helix DNA-binding domain
  ------ inclusion threshold ------
      0.066   13.4   0.1       0.11   12.6   0.1    1.3  1  TetR_C_35  Bacterial Tetracyclin repressor,  C-terminal domai


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.1   1.2e-18   5.3e-15       1      58 [.      29      86 ..      29      87 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 1.2e-18
                --HHHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR  1 ltltqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58
                lt++q++i+ril+e++++  ++La + ++ ++++t +l+r+e++Gl+ R k  +D+R+
  CTQ26263.1 29 LTEQQWRIVRILAERPSMDFHDLAFRACILRPSLTGILTRMERDGLVLRLKPVNDQRK 86
                89*******************************************************7 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   1.5e-09   6.8e-06       2      61 ..      28      85 ..      27      86 .. 0.95
   2 ?   -2.5   0.0       1.1   4.9e+03      36      49 ..     123     136 ..     114     137 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.5e-09
                T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2  2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61
                 lt +q+r+   L+ rp   +   +la r  + +++++ il r+++ GLv r +  +D R
  CTQ26263.1 28 NLTEQQWRIVRILAERPS--MDFHDLAFRACILRPSLTGILTRMERDGLVLRLKPVNDQR 85
                68999************9..*******************************999999998 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHTT CS
      MarR_2  36 savsrilkrLvaaG 49 
                 + +s +l+++ a G
  CTQ26263.1 123 QQLSSLLEEFIALG 136
                 56788888888877 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.4e-06     0.015       1      68 []      29      95 ..      29      95 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.4e-06
      HTH_27  1 ltrqqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68
                lt+qq+ +++ ++ +r  +   dl++r  +   +   +l ++++ GLv r +   d+r   v+lT++G
  CTQ26263.1 29 LTEQQWRIVRILA-ERPSMDFHDLAFRACILRPSLTGILTRMERDGLVLRLKPVNDQRKLYVSLTPAG 95
                799**********.6666666***************************8888889************9 PP

>> TetR_C_35  Bacterial Tetracyclin repressor,  C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.5e-05      0.11       7      74 ..      59     126 ..      54     130 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.5e-05
   TetR_C_35   7 raavrafleeaaadpLvravltgeakedLlpllTtdseplleaAsarlaevlaeswpqldeadaevla 74 
                 r +++++l++ ++d Lv ++   + ++ L   lT  ++ l e+A+a+++e+++    q++ ++++ l 
  CTQ26263.1  59 RPSLTGILTRMERDGLVLRLKPVNDQRKLYVSLTPAGTALYESAQAEVEETYRLLEAQFTTEKLQQLS 126
                 5688999**********************************************999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1186.78
//
Query:       CTQ26264.1  [L=147]
Description: putative oxidoreductase in 4-hydroxyproline catabolic gene cluster [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1147.16
//
Query:       CTQ26265.1  [L=338]
Description: putative enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-102  342.6   0.6   2.5e-102  342.4   0.6    1.0  1  Ldh_2     Malate/L-lactate dehydrogenase


Domain annotation for each model (and alignments):
>> Ldh_2  Malate/L-lactate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.4   0.6  1.4e-106  2.5e-102       3     332 ..       8     331 ..       6     332 .. 0.95

  Alignments for each domain:
  == domain 1  score: 342.4 bits;  conditional E-value: 1.4e-106
                 HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTT-GGGTGGGHHHHHHHHHTTSSBSS---EEEEEETTEEEEEETTE-HHHHHHHHHHHHHHHHHH CS
       Ldh_2   3 aeelralveavleaagvseedAeivadvlveadlrGvdsHGvarlpryverlkkgkinpkaepevvketpavavvDgdnglGqvvakkamelaiekake 101
                 + e+ +l+ +vl a g+s+++A+++a+++++++++G++sHG+ rl  +v++l+kgk++p+aep++ +++pa+a+ D+  ++  ++ ++a+ l++ek + 
  CTQ26265.1   8 LPEAYDLALEVLSANGFSADHAAAIARNVTAGERDGCASHGLWRLLGIVDTLRKGKVSPDAEPQIHDQAPAIARADAGGAFSLLAYERALPLLLEKTRH 106
                 567889999****************************************************************************************** PP

                 HSEEEEEEEEEE--SSHHHHHHHHHHTTSEEEEEEEESSEB--TTBSS--BE--EEEEEEEETTSSEEEEEEESBSS-HHHHHHHHHCT---STTSEEE CS
       Ldh_2 102 hGigivavrnsnhfGaagyyaemaaeaGligiaftnssplvaptggkeavlGtNPiafaaPakeeepfvlDmAtSvvargkievaarkgkpiPegwalD 200
                 +Gi+++a++++ hf a+ +  e ++eaGl+g+a+t s+++vap gg+++++GtNPiaf++P+++++pf++DmAtS++arg+i++++r+gk +Pegw++D
  CTQ26265.1 107 NGIAALAINRCVHFSALFADIEPLTEAGLVGLACTPSHAWVAPAGGTRPLFGTNPIAFGWPRQDKPPFIVDMATSAAARGEIQLHQRAGKALPEGWGID 205
                 *************************************************************************************************** PP

                 TTSSEES-HHHHHCCCEE-BTTTHHHHHHHHHHHHHHTCTTTS-HGGGSSSSS.SCTSS-SSEEEEEEEEEGGGTT...HHHHHHHHHHHHHHHHTS-B CS
       Ldh_2 201 adGnpttDPaaaleggallplGghKGyglalmvelLagvLsgaatgkevsgse.deekkpaklghffiaidpeafgd..aeefkervdalldelraspp 296
                 ++G+pttD+a++l+ ga+l++GghKG++la+mvelLag L g+ t+ e   ++ ++++ p+  g++++a+dp++f +  a+e  er+++l+++++++ +
  CTQ26265.1 206 SQGQPTTDAAEVLN-GAMLTFGGHKGSALAAMVELLAGPLIGDMTSAESLAWDnGAGGLPYG-GELILALDPQRFLGaqAQEQLERAETLFNAMQDQGA 302
                 **************.*******************************8888888688888998.************652355666777777777777654 PP

                 STTTSS---TTHHHHHHHHHHHHH-EEEEHHHHHHH CS
       Ldh_2 297 aegadevllPGereaaaraerlkeGipldeavleel 332
                        +lPGer++a r++++++G+ +++++++e+
  CTQ26265.1 303 -------RLPGERRFACRQQSERQGVAISRSLHDEI 331
                 .......59**********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2510.93
//
Query:       CTQ26266.1  [L=406]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-16   59.7   0.1    4.4e-16   59.2   0.1    1.2  1  Ala_racemase_N  Alanine racemase, N-terminal domain
    9.5e-15   55.0   0.0    1.8e-14   54.2   0.0    1.5  1  D-ser_dehydrat  Putative serine dehydratase domain
  ------ inclusion threshold ------
      0.098   11.6   0.5       0.14   11.1   0.5    1.1  1  Histidinol_dh   Histidinol dehydrogenase
       0.13   13.0   0.0       0.27   12.1   0.0    1.5  1  FAST_2          FAST kinase-like protein, subdomain 2


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.1   9.8e-20   4.4e-16       3     180 ..      36     216 ..      34     230 .. 0.83

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 9.8e-20
                     HHHHHHHHHHHHHHS.CTTSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTSCSEEEEESCSTGGGHHHHHH......T.T CS
  Ala_racemase_N   3 ldalrhNlrrlrala.gpgaklmavvKanayghgavevaralaeggadgfgvatleEalelreagitapilvlegfspeelaalae......y.d 89 
                      +al++N+++++++a ++g+ l ++ K+      + ++ +   ++ga g+gv ++  a +  ++gi++ ++v + + +  ++ +a+      + d
      CTQ26266.1  36 KSALENNISWMQRYAdARGVSLAPHGKT-TMTPWIFQAQQ---RAGAWGIGVGSVWQASAAMASGIQRVLMVNQLVGKANMQVVAQlkahyrAvD 126
                     689************766999*******.77777766666...456*******************988776666666666666666667887569 PP

                     EEEEESSHHHHHHHHHHHHHTTS-EEEEEEBESSSSSSSBSC.HHHHHHHHHHHHTTTEEEEEEE-S-SSTTSTSHHHHHHHHHHHHHHHHH CS
  Ala_racemase_N  90 ltvtvdsleqlealaaaareagkplrvhlkidtgmgRlGftp.eeleellealaalpglrleglmtHfasadepdeeteaqlarfeealeel 180
                     + ++vds+ +++al+a+ +++g++l+v++++ + +gR+G++  +++ +l++++++lpglrl+gl  + +     d   + q++++ + +++l
      CTQ26266.1 127 FICCVDSEVNVRALSAFFADQGQTLDVLIELGVPGGRCGCRSvDDALALAQRVSDLPGLRLRGLELYEGVLHGDD--PQPQVEALLQQAAAL 216
                     *********************************99********************************99996644..222555544444444 PP

>> D-ser_dehydrat  Putative serine dehydratase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0     4e-18   1.8e-14       1      96 []     295     392 ..     295     392 .. 0.86

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 4e-18
                     -EEEEEEEEEEETTTTEEES--HHHH-S-S.S--BT-EEE-TTS....EEEEB-..EE-SS-EEEE--TT-GGGS-TT-EEEEE-S-HHHHHTT- CS
  D-ser_dehydrat   1 AlavlatVvSrptarralvdaGskalslds.sgpgfgkvvagle....egwvvsvrrlsdEhgiltleeesaddlrvGdvvrlipnHaCptvnlh 90 
                     Al+++a V S+p+a+ra+v+ G+++ ++d    ++++  ++g+e    ++++vs + ++d+h +l+l+ ++ +d++vGd++ +  +H+C+t++++
      CTQ26266.1 295 ALELMAMVQSVPEADRAVVNFGKRDCAFDAgLPQPIAHYRNGQElalrAESIVS-TGIMDQHCMLRLA-PG-SDVQVGDILLFGTSHPCLTFDKW 386
                     8999*************************5444446666666669997666666.9***********9.55.8********************** PP

                     SEEEEE CS
  D-ser_dehydrat  91 dayvvv 96 
                     +++++v
      CTQ26266.1 387 KTLLLV 392
                     998865 PP

>> Histidinol_dh  Histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   3.2e-05      0.14     142     203 ..      58     119 ..      50     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.2e-05
                    E-SSGG.--HHHHHHHHHCT-SEEEE--HHHHHHHHHH--SSS---SEEE---SHHHHHHHH CS
  Histidinol_dh 142 tPpqdgkvnpavlaaaklagvdeiykvGGaqAiaalAyGtesipkvdkivGPGniyVaaAKr 203
                    +P  + +++p +  a + ag+  i      qA aa+A G +++  v+++vG  n+ V a  +
     CTQ26266.1  58 APHGKTTMTPWIFQAQQRAGAWGIGVGSVWQASAAMASGIQRVLMVNQLVGKANMQVVAQLK 119
                    55448999999**********999887788************************98876544 PP

>> FAST_2  FAST kinase-like protein, subdomain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.9e-05      0.27      52      86 ..     102     136 ..      85     137 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.9e-05
      FAST_2  52 aLkelLggenylkinvltpygytiDfevvLDkegk 86 
                 + ++l+g+ n+  + +l  +++ +Df++++D+e +
  CTQ26266.1 102 MVNQLVGKANMQVVAQLKAHYRAVDFICCVDSEVN 136
                 5689***************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2951.21
//
Query:       CTQ26267.1  [L=479]
Description: D-aminoacylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-43  149.2   2.5      1e-40  140.7   2.5    2.1  1  Amidohydro_3  Amidohydrolase family
    1.1e-07   31.5   0.1      0.015   14.6   0.0    2.3  2  Amidohydro_1  Amidohydrolase family
  ------ inclusion threshold ------
       0.13   12.6   0.2       0.38   11.1   0.2    1.8  1  Urease_alpha  Urease alpha-subunit, N-terminal domain


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   2.5   1.7e-44     1e-40       1     472 [.      45     459 ..      45     460 .. 0.82

  Alignments for each domain:
  == domain 1  score: 140.7 bits;  conditional E-value: 1.7e-44
  Amidohydro_3   1 eviDakGrlvlPGFvDsHtHlagggvnlrllrlpdarvtslegvltavrdqagtt..........pkgrwivgeGwdeaqfaeerfpyalaeldevl 87 
                   +viD +Gr+++PGF+D+HtH      +++++r+p++ ++ ++gv+t++ +++g +          p+++ ++g   ++  f ++ +  + ++++++ 
    CTQ26267.1  45 QVIDGQGRVLAPGFIDVHTH-----DDINVIRMPEYLPKLSQGVTTVIVGNCGISaatatmrgevPDPMNLLG---EQQHFIYPTVEAYAHAVEAA- 132
                   79******************.....77899**********************************999999999...***********999999999. PP

  Amidohydro_3  88 edapvllaaldtHaavrnsaaldlagiteatpdp..aggeilrdangegatgllregafhlvldlaplareaeaaavaaalaalasyGitsveaggg 182
                    +  +++++l++H+a+rn+++ dl  +++a + +   ++  lrda ++ga+gl+++     ++++a +++ +e +a+a  laa  ++G+ +      
    CTQ26267.1 133 -RPSLNVGTLIGHTALRNNHMDDL--FRPANETEiaGMRVQLRDALRQGALGLSTGL----AYASAFQSTTEEVMALAEELAA--GKGVYTT----- 215
                   .999********************..6666666666*******************66....4444444666666666665554..5666666..... PP

  Amidohydro_3 183 nvsslddleplfeltaeeklplrviikelldaaerlglplspgseeltigavklfadgvlgsrtalltepyftgwpdfedealaelvaaadergldv 279
                     + ++++ep++e+ +e+   +r+                 +g+  + +++ k++++ ++g++  +l+              + + +++ ++  +d+
    CTQ26267.1 216 --HLRSEFEPILEALDEA---FRIGR---------------HGNVPVVVSHHKCAGAKNWGRTKETLA--------------FFDEMRQQQDIACDC 278
                   ..7799*******99999...55553...............457999999999999977766544444..............334455555555555 PP

  Amidohydro_3 280 aihaigdaavd..dvldafeaa.......aekngnqdrrrlehaegv...tesqiervaalqvaagvqpvfnfedelldsrlgperargstpvkell 364
                   + ++   +++d  +v d+f+ +       +e+ g++       +++      s  +++a+l  a ++ + ++                    v++ +
    CTQ26267.1 279 YPYSASSSTLDmkQVTDEFDIVitwseaqPEQAGKTL------QQIAdewQVSLHDAAARLMPAGAIYHNMDE-----------------QDVRRVM 352
                   5555555555555555555555443111155555553......3333333668999999*********99988.................45***** PP

  Amidohydro_3 365 nagvkvalgsDapvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvld....adpldvdppel 457
                   + +v+++ gsD   + + p+pr+++a++r  +   ++ r+++ ++l++a++ +T  +A+++ l dr G +++G+ ADlv++d    +d + + +p++
    CTQ26267.1 353 RYPVTMI-GSDGLPNDPMPHPRLWGAFPRVLG---HYSRDEQLFPLTTAVHKMTGLSAARFQLADR-GLVKIGYFADLVLFDpqtvRDVASFSDPKR 444
                   ***9966.***********************8...9*****************************9.****************************** PP

  Amidohydro_3 458 aearvrltvvdGrvv 472
                     +++++++v+G+  
    CTQ26267.1 445 PADGIEAVMVNGVMS 459
                   ************875 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2   2.6e-06     0.016       2     166 ..      54     232 ..      53     273 .. 0.72
   2 !   14.6   0.0   2.6e-06     0.015     271     341 ..     383     456 ..     344     461 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.6e-06
                   EEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH.................HHHHHHHHHHT..SSSEEEE CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst.................giealleaaee..lplglri 79 
                   + PG+ID+H+H   ++          +   ++   l +g++t + + +++ a++ + + +                  +ea + a+e+    l+++ 
    CTQ26267.1  54 LAPGFIDVHTHDDINV----------IRMPEYLPKLSQGVTTVIVGNCGISAATATMRGEvpdpmnllgeqqhfiypTVEAYAHAVEAarPSLNVGT 140
                   78*********63332..........44444455688999999999999999999987778887777777777777755555555555442347777 PP

                   EEESSEGGS.........GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE.TSSCHHHHHHHHHH CS
  Amidohydro_1  80 lggkvsldr.........gsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHa.letkgevedaeaaf 166
                   l+g + l +          ++      r++l    ++++++ a g+  ++la ++a++ + ee+ ++++e ++ +   ++H+ +e + + e+  +af
    CTQ26267.1 141 LIGHTALRNnhmddlfrpANETEIAGMRVQL----RDALRQGALGLS-TGLAYASAFQSTTEEVMALAEELAAGKGVYTTHLrSEFEPILEALDEAF 232
                   7777777669999998653333344444444....444465555555.79999*********99999998888777778888766666666666666 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.6e-06
                   CCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSE....EEEEEEETT CS
  Amidohydro_1 271 llyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdg....nvkkvivkG 341
                    +y+++e+ ++l  a+ ++T   A  + l+ + G ++ G+ ADlv++d++   +++  ++++     +  v+v+G
    CTQ26267.1 383 GHYSRDEQLFPLTTAVHKMTGLSAARFQLA-DRGLVKIGYFADLVLFDPQTVRDVASFSDPKrpadGIEAVMVNG 456
                   556666888********************7.99**************9955333333333220001355566665 PP

>> Urease_alpha  Urease alpha-subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   6.4e-05      0.38      66     101 ..       3      40 ..       1      54 [. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.4e-05
  Urease_alpha  66 lDlvitnavilDatg..ivkadigikdgrivaiGkagn 101
                   +D++  n++++D +g   ++ad+++k  ri+ai+ a +
    CTQ26267.1   3 VDWLFKNVTVIDGSGgpQYRADVAVKGDRIMAIAPALD 40 
                   7999*********884569**************98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3574.07
//
Query:       CTQ26268.1  [L=130]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-23   82.1   0.0    3.9e-23   81.7   0.0    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   2.2e-27   3.9e-23      10     118 ..      20     123 ..      16     125 .. 0.95

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 2.2e-27
                    S-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--EEEEEE-S CS
  Ribonuc_L-PSP  10 pYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaParsaveVa 105
                    p+ +av+ag+++yvsGq+p++  +ge+veg + +q r a++n   ++++ag +l+dvV+v+v l+d+  f+ +n+v  e+f ++   Par +  Va
     CTQ26268.1  20 PFARAVEAGGWLYVSGQTPMK--NGEVVEGGIVDQSRLAIQNCVDIMTEAGYTLADVVHVKVILTDARYFQSFNKVFREFFGDNP--PARICC-VA 110
                    7999***************98..8***********************************************************95..***997.89 PP

                    BSGGG-SEEEEEE CS
  Ribonuc_L-PSP 106 aLpkgakvEIeai 118
                     L  + kvE++++
     CTQ26268.1 111 DLVVDCKVEVDVT 123
                    9999******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 988.29
//
Query:       CTQ26269.1  [L=495]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-41  140.0  40.9    1.3e-40  139.5  40.9    1.2  1  SSF       Sodium:solute symporter family


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.5  40.9   7.5e-45   1.3e-40       1     406 []      34     419 ..      34     419 .. 0.88

  Alignments for each domain:
  == domain 1  score: 139.5 bits;  conditional E-value: 7.5e-45
         SSF   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGlavvllelgalllvlllllllaerlrnagalTlpdylskRfkgkrilvylsalslllvitl 99 
                 + l+grsl  + +  s+ ++ ++ +s vG  G ++  G a++l+ lg  +++ll+ +l+a++ r++  +T+ + +s+  +g++i++ l a+ ++++ + 
  CTQ26269.1  34 FLLGGRSLPMILTLGSTVGTMVGTGSSVGAVGFGYSNGWAGMLYGLGGAVGILLVAWLFAPV-RKLRFMTMSEEMSYYTGGSKIIKNLVAILIFIASIG 131
                 789*********************************************************85.99********************************** PP

         SSF 100 klsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevGgleslveklkeaapkvvdlltpdslkll 198
                  l + ++gg+ ++  a G+++++a +++a++ ++Y+ iGG  Avv+ dtiq++++ vg ++++i+++++vGg +++ + +   +p  + l+  d l   
  CTQ26269.1 132 WLGAHILGGGLYLAWASGIDINVAKIIIALAFVVYVGIGGYSAVVWIDTIQSIVLFVGFILMAILAVHHVGGWSHIQQAV---DPAAQSLFAVDKL--- 224
                 *************************************************************************9987655...5544577776664... PP

         SSF 199 rdpltalslwlglvlGvaglphilvRflaakdakailkgvlkltivlilvligmisiilfaiklagavpkavgtevgvsniaypeLvvkllpnllaGll 297
                    l alsl + ++ Gv   p   +R+++ak ++++++++ +     +l+++g      f  +++g+   ++ +++++s  a+   + ++lp++la  +
  CTQ26269.1 225 -GVLPALSLAMVIGVGVLATPSYRQRIYSAKTVSSVRQSFTIT----GLLYLG---FS-FLPAIIGMAVWTMNPQLENSGFAF-LFATQVLPPVLAMAI 313
                 .57889999999999*****************99999887654....455555...11.223344442333444556666666.468999999999999 PP

         SSF 298 lavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkgvlklvelafaglasavlavillalfwkrvne 396
                 l + ++a ms+ +s  ++a s++ +DlY+ +  +  a ek  +++sri ++ vi+la+l a+++++  ++ ++  +++++ s ++   +l+ fw r+n 
  CTQ26269.1 314 LIAGMSANMSSGSSDAIAAVSIMLRDLYTLVTGHMPAPEKA-IRLSRIFLVLVIALALLFALTSND--IISYITKMISMIMSGMFICTMLGRFWTRFNW 409
                 9999****************************999777775.689999999999999999987765..6****************************** PP

         SSF 397 qGAlagliiG 406
                 qGA a+l  G
  CTQ26269.1 410 QGAVAALAGG 419
                 ***9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1111  (0.0619666); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 3520.19
//
Query:       CTQ26270.1  [L=290]
Description: 2-oxo-3-deoxygalactonate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-97  323.4   0.8      1e-96  323.2   0.8    1.0  1  DGOK      2-keto-3-deoxy-galactonokinase


Domain annotation for each model (and alignments):
>> DGOK  2-keto-3-deoxy-galactonokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.2   0.8  5.8e-101     1e-96       1     285 [.       8     284 ..       8     285 .. 0.98

  Alignments for each domain:
  == domain 1  score: 323.2 bits;  conditional E-value: 5.8e-101
        DGOK   1 DWGtsslRaylldadgevlaerasdeGilalaaaefeaaleallgdwleaaekalpviaaGmvGsrqGWveapyvavPaalaalaaalarvaegrevai 99 
                 DWG+++lRa++++ dge++++ + + G+++l+ ++ ea+++++l++w+     alpv++aGm+Gs+ GW+ +py+a+P+al+al+ +l +v  +++v+i
  CTQ26270.1   8 DWGSTQLRAWRMR-DGECIDKLKLPCGVTRLNGQRAEAVFQQQLAPWRGD--PALPVVMAGMIGSDAGWQPVPYLACPLALEALNGQLYEV--AEKVWI 101
                 9***********9.**********************************95..56*************************************..9***** PP

        DGOK 100 vPGlaqeseaelDVmRGEEtqilGalaleeseealvvlpGthsKWvrvedgriesfsTfmtGElfalLsehsiLgrslaaaeadeeaFaegveaaaape 198
                 vPGl+ +++a  DVmRGEEtq+lGa+  +   + ++v+pGth+KWv+v++g +++f+T+mtGEl++lL +hs+Lg++l+a+ +de+aFa g+e++ ++ 
  CTQ26270.1 102 VPGLKVAQAADYDVMRGEETQLLGAW--QLMPAECYVMPGTHCKWVQVQNGVVRQFATAMTGELHHLLLNHSLLGQQLPAQLPDEAAFALGMEKGLNQP 198
                 *************************8..788999***************************************************************** PP

        DGOK 199 sllsklFsvRaaallgklaaeaaasyLsGlLIGaEvaalrsalaekeevvLvGeealaalYaralaalglevrvvdaeeatlaGlla 285
                 +lls lFs+Raa++lg+laa+++++yLsGlLIGaEva+ ++++++ ++vvLvGe++l+a+Y++a+aa+gl+v+++++e+a+l+G+++
  CTQ26270.1 199 ALLSGLFSARAARVLGALAATSVSDYLSGLLIGAEVATFSERYRA-SRVVLVGEHSLSARYQQAMAARGLAVSCCSGEAAFLSGIAR 284
                 *******************************************97.**************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2174.74
//
Query:       CTQ26271.1  [L=199]
Description: 2-oxo-3-deoxygalactonate 6-phosphate aldolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-28   98.0   0.3    5.1e-28   97.8   0.3    1.0  1  Aldolase  KDPG and KHG aldolase
    1.8e-05   24.2   0.2     0.0002   20.8   0.2    2.6  1  TMP-TENI  Thiamine monophosphate synthase
  ------ inclusion threshold ------
      0.044   13.0   0.3       0.93    8.6   0.0    2.4  3  DHO_dh    Dihydroorotate dehydrogenase
      0.098   12.0   2.6        2.4    7.4   2.6    2.0  1  NMO       Nitronate monooxygenase


Domain annotation for each model (and alignments):
>> Aldolase  KDPG and KHG aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.3   1.1e-31   5.1e-28       6     183 ..       2     180 ..       1     191 [. 0.93

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 1.1e-31
                 HCHSEEEEE--SSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHH-.TTSEEEEES--SHHHHHHHHHCT-SEEEESS--HHHHHHHHHTTS- CS
    Aldolase   6 keakvvpvivikdkedalplaeaLvagGlrvlevtlrteaaldairvlrker.pdllvgaGtvlnaeqlaeakeaGaqfvvsPGltadllkaavdlkip 103
                  + k+v++++  + ++a + +e+L++ G r +e+ l ++   + i +++++  + +++gaGtvl+ eq++  +eaGa+ +v+P  ++ +++ avd+ + 
  CTQ26271.1   2 DKIKLVAILRGIQPAEAADHIETLINAGFRYIEIPLNSPDWQQSIPAMVRQFgERAMIGAGTVLKVEQVDFLAEAGAKLIVTPNTAPAVIRRAVDKGML 100
                 57899****************************************99888862669******************************************* PP

                 EEEEESSHHHHHHHHHTT--EEEETTTTTTTHHHHHHHHCTTT.TT-EEEEBSS--TTTHHHHHTSTTBS-EEESCCC-HH CS
    Aldolase 104 llPGvstpseimlaldlGlkrlklfPaeasGGvkalkalagpf.aqvrfiPtGGispanvrdylalpsvlvvgGswlveas 183
                 +  G +t+se   ald G + lk+fP+ a+G    ++al ++  ++v ++  GG++p+++  +++++   +  Gs l  a 
  CTQ26271.1 101 VCAGCATASEAFSALDAGAQWLKIFPSSAFG-ADYIRALKAVLpPEVPVLAVGGVTPESLATWIQAGCAGAGLGSDLYRAG 180
                 ******************************9.78888888877359*********************99999999987765 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   4.4e-08    0.0002      85     176 ..      87     171 ..      14     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4.4e-08
    TMP-TENI  85 pvaearellgpdliiGlSvhsleeaeeaealgadYigvGpifpTdtKkdaeplgleglkelaeale..iPvvaiGGitlenvaevleagadgva 176
                 ++a +r+ +++++++ + + + +ea  a ++ga  +   +ifp+      ++ g +++++l++ l   +Pv a+GG+t+e++a+ ++ag++g  
  CTQ26271.1  87 APAVIRRAVDKGMLVCAGCATASEAFSALDAGAQWL---KIFPS------SAFGADYIRALKAVLPpeVPVLAVGGVTPESLATWIQAGCAGAG 171
                 567788889999999999999999999999999988...45665......689************9999*********************9975 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.48   2.2e+03      28      67 ..      22      59 ..      17      81 .. 0.61
   2 ?    2.1   0.1     0.021        92     250     278 ..     102     130 ..      98     135 .. 0.84
   3 ?    8.6   0.0   0.00021      0.93     232     283 ..     133     182 ..     128     193 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.48
                HHHHHCTTSSEEEEEEE-SS-B--S-S--EEEETTCTEEE CS
      DHO_dh 28 ilkllklgfgaieigsvtpkpqeGnpkPrvfrlkedrsvl 67
                i++l+++gf +iei    p  q+    P ++r   +r+++
  CTQ26271.1 22 IETLINAGFRYIEIPLNSPDWQQ--SIPAMVRQFGERAMI 59
                55566666666666555554443..345555555555554 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.021
                 ESS--SHHHHHHHHHHTECEEEESHHHHH CS
      DHO_dh 250 vGGiesgeDalekieaGAslvqvytalvf 278
                 + G  ++  a+  + aGA  ++++    f
  CTQ26271.1 102 CAGCATASEAFSALDAGAQWLKIFPSSAF 130
                 67999**************9999866655 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00021
                 HHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCH CS
      DHO_dh 232 kvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpki 283
                   ir+l+++l +e+p+++vGG++  e     i+aG +   +++ l+ +g  +
  CTQ26271.1 133 DYIRALKAVLPPEVPVLAVGGVTP-ESLATWIQAGCAGAGLGSDLYRAGQ-A 182
                 679******************965.5566789999999999999954444.3 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.6   0.00054       2.4     105     224 ..      69     175 ..      37     186 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00054
         NMO 105 kvevvldekvevvsfgfglpteevvarlkeagvvliptissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavd...iPviAaG 200
                 +v+ +++ +++++ + + +p   v+ r  + g+++    +++ ea  +  +Ga  l +  + a G      +          ++l+av    +Pv+A G
  CTQ26271.1  69 QVDFLAEAGAKLIVTPNTAP--AVIRRAVDKGMLVCAGCATASEAFSALDAGAQWLKIFPSSAFGADY---I----------RALKAVLppeVPVLAVG 152
                 55555555555555555555..5555555555555555566666555555555555554444444333...1..........12233323339****** PP

         NMO 201 GiidrrgvaaaLalGAsgvqigtr 224
                 G+   + +a+ + +G +g+ +g+ 
  CTQ26271.1 153 GVT-PESLATWIQAGCAGAGLGSD 175
                 *75.6889**********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1462.05
//
Query:       CTQ26272.1  [L=301]
Description: Transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-19   69.2   0.0    4.3e-19   68.7   0.0    1.2  1  SIS       SIS domain
    3.5e-15   55.7   0.1    6.2e-15   55.0   0.1    1.4  1  HTH_6     Helix-turn-helix domain, rpiR family
    8.6e-08   32.3   0.8    0.00011   22.3   0.2    2.5  2  SIS_2     SIS domain
  ------ inclusion threshold ------
      0.047   13.5   0.1       0.14   12.0   0.1    1.8  1  HTH_IclR  IclR helix-turn-helix domain
      0.071   13.0   0.0       0.15   12.0   0.0    1.6  1  MarR      MarR family
       0.09   12.7   0.2       0.22   11.4   0.2    1.7  1  MarR_2    MarR family


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   1.4e-22   4.3e-19       2     130 ..     138     266 ..     137     267 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 1.4e-22
                 HCTSSEEEEEESHH.HHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSS CS
         SIS   2 LakakriyvlGaGt.syaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplaread 99 
                 L++a++i+ lG+G  s   a+e+++ l ++g +vv+ +d    +++  + ++++d+vi++s  g+t++ +++a  a++ gak+iaIT  +g+pla++ad
  CTQ26272.1 138 LSDARQILALGMGGgSTICAQEIQYRLFRLGLPVVSQSDGLLVRMM-SSAVTPQDVVIVLSLGGYTREIIESAAIASQYGAKVIAIT-PAGTPLAEQAD 234
                 899********975266799**********9988888887776666.****************************************.99********* PP

                 EEEEEEEECHC.SSSHCHHHHHHHHHHHHHHH CS
         SIS 100 lalyinaepet.lvastksltaqlaaldalav 130
                 l+l + + ++  ++ +  s +a+la++d+la+
  CTQ26272.1 235 LVLPLLVRENDyIFKPSTSRYAMLAMVDVLAT 266
                 *****************************986 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   2.1e-18   6.2e-15       6      75 ..      24      93 ..      19      95 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 2.1e-18
                HHHHH-----HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH--HHHHHHH CS
       HTH_6  6 kiqskkekltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselklaLakela 75
                 i  +  +lt  ek+ia +il +   a+el i+++A   + S+a+++rfa+ LG k  +elk++La++la
  CTQ26272.1 24 CITDRFVELTATEKRIAQFILDDIAAAVELPIAEIARLTQTSQASVTRFARALGCKDVRELKMKLAQSLA 93
                57788889************************************************************98 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00082       2.4      15      58 ..     120     165 ..     109     173 .. 0.66
   2 !   22.3   0.2   3.6e-08   0.00011      99     137 ..     185     223 ..     172     224 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00082
                 HHSHHHHHHHHHHHH.HHHHTT--EEEEES.GGGHHHHHHTSSSTT CS
       SIS_2  15 etqaeaiekaaelia.dslenggkvlvfGs.GhSaalaeelaarag 58 
                 et+  a++  a   a + l++ +++l++G  G+S + a+e+ +r+ 
  CTQ26272.1 120 ETNRRALDIEALKRAvSWLSDARQILALGMgGGSTICAQEIQYRLF 165
                 444444443333333033444578*****9789*********9985 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 3.6e-08
                 TT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE CS
       SIS_2  99 vrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlt 137
                 + + p+Dv +v+S +G    ++e a  a + g+kviA+t
  CTQ26272.1 185 SAVTPQDVVIVLSLGGYTREIIESAAIASQYGAKVIAIT 223
                 4789**********************************8 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   4.7e-05      0.14       8      42 ..      43      76 ..      40      76 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.7e-05
                HHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHH CS
    HTH_IclR  8 iLdalaeapqeltlselArrtglpkStvhRlLqtL 42
                iLd +a+a + l ++e+Ar t  + ++v R+ + L
  CTQ26272.1 43 ILDDIAAAVE-LPIAEIARLTQTSQASVTRFARAL 76
                6777888888.9******************98876 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.1e-05      0.15       8      43 ..      43      78 ..      40      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.1e-05
                HHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHH CS
        MarR  8 iLrilyeqgplsvseLakklgvskstvtrvldrLek 43
                iL  ++   +l ++e+a+  ++s+++vtr++++L +
  CTQ26272.1 43 ILDDIAAAVELPIAEIARLTQTSQASVTRFARALGC 78
                788888888999********************9965 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   7.4e-05      0.22      14      44 ..      47      75 ..      31      76 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.4e-05
                HHCTTTSEEEHHHHHHHHTSSHHHHHHHHHH CS
      MarR_2 14 Lgrrpgrdltvgelarrlglsksavsrilkr 44
                ++++ +  l ++e+ar ++ s+++v+r  + 
  CTQ26272.1 47 IAAAVE--LPIAEIARLTQTSQASVTRFARA 75
                444444..99*****************8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2131.19
//
Query:       CTQ26273.1  [L=177]
Description: putative N-acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-14   54.2   0.0      2e-14   53.8   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    5.2e-13   49.0   0.0    8.5e-13   48.4   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.1e-10   40.9   0.0    3.2e-10   40.3   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.6e-05   25.0   0.1    3.5e-05   23.9   0.1    1.7  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
     0.0022   18.2   0.4     0.0041   17.3   0.1    1.7  2  Acetyltransf_6   Acetyltransferase (GNAT) domain
     0.0059   16.7   0.0     0.0093   16.1   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
      0.012   14.6   0.0      0.013   14.5   0.0    1.2  1  DUF2156          Uncharacterised conserved protein (DUF2156)
      0.012   15.7   0.0      0.014   15.5   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
      0.047   13.7   0.0      0.084   12.9   0.0    1.4  1  FR47             FR47-like protein
      0.049   13.8   0.1       0.19   11.9   0.1    2.0  2  Clp_N            Clp amino terminal domain, pathogenicity isl
       0.07   12.8   0.0       0.12   12.1   0.0    1.4  1  DUF1999          Protein of unknown function (DUF1999)
       0.11   12.2   0.7       0.23   11.1   0.2    1.8  2  CSTF_C           Transcription termination and cleavage facto


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   1.3e-17     2e-14       7     117 .]      37     141 ..      28     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 1.3e-17
                     HHHHHTHHHHHHHHHHHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEE CS
  Acetyltransf_1   7 llvesffppnedaseeefeesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlav 101
                     +  + +    e  s+++++++  le+e+ l+a   g+++Gfi   + +d      +i ++aV+ +++ +G+G++Lle ++e ar+ g+ ++ l++
      CTQ26273.1  37 IPSLAWLADSEVISVARHHDY--LETEHSLLAVAAGQPVGFILTEPLDD----ALFIVEVAVHQAWQQQGIGRMLLERVIESARQMGYPAVTLTT 125
                     445555555556666666666..6777888889*********9999999....8***************************************88 PP

                     ETTEHHHHHHHHHTTE CS
  Acetyltransf_1 102 eedndaairlYeklGF 117
                     +       ++Y++lGF
      CTQ26273.1 126 FREVPWNAPFYTRLGF 141
                     8888888********9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   5.7e-16   8.5e-13      24     117 ..      56     152 ..      43     155 .. 0.77

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 5.7e-16
  Acetyltransf_10  24 erieegealllvaeeggkivGvi...elrdgshisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavgee 112
                      +++  +  + l+a   g++vG+i    l+d   i  ++V++++++qGig++Lle+v+e a+++g+   +lt         pfY +lGF +++e 
       CTQ26273.1  56 DYL--ETEHSLLAVAAGQPVGFIltePLDDALFIVEVAVHQAWQQQGIGRMLLERVIESARQMGYPAvTLTTFREVpWNAPFYTRLGFAMLDEL 147
                      445..333445666688******542224444********************************99886665555549************9998 PP

  Acetyltransf_10 113 qeenG 117
                      +  +G
       CTQ26273.1 148 TLPAG 152
                      87666 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   2.2e-13   3.2e-10       6      74 ..      64     141 ..      42     142 .. 0.70

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 2.2e-13
                     EEEEETTEEEEEEEEEEES..TCTEEEEE-GGGTTSSHHHHHHH.HTT....SEEEEEEEEE...THH..HHHHHHHHTTE CS
  Acetyltransf_7   6 fVaeddgkivGfialslld..aeitrlaVdpeyrgkGiGraLle.aae....kgiileqlel...nae..kaikfYeklGF 74 
                     ++a   g++vGfi  ++ld    i ++aV+++++ +GiGr Lle ++e     g+    ++l   + e   +++fY +lGF
      CTQ26273.1  64 LLAVAAGQPVGFILTEPLDdaLFIVEVAVHQAWQQQGIGRMLLErVIEsarqMGYP--AVTLttfR-EvpWNAPFYTRLGF 141
                     3344459******9999998777777*****************9532234344532..22332221.1335689******* PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   2.4e-08   3.5e-05      73     126 ..      84     142 ..      13     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.4e-08
                     EEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--SSH.....HHHHTTT-E CS
  Acetyltransf_9  73 aagvtgVavapehrgrgvlskLlaraleemreegqplsllfPssi.....piYrrfGye 126
                     a  ++ Vav+   +++g+ + Ll+r++e +r++g+p ++l+ +++     p+Y r+G+ 
      CTQ26273.1  84 ALFIVEVAVHQAWQQQGIGRMLLERVIESARQMGYPAVTLTTFREvpwnaPFYTRLGFA 142
                     6789************************************9854445555*******96 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   2.7e-06    0.0041      74     133 ..      64     123 ..       8     129 .. 0.86
   2 ?   -2.1   0.0       2.6   3.9e+03      30      53 ..     148     168 ..     137     176 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.7e-06
  Acetyltransf_6  74 yvlrldgrpvAvalglrsgdrlyywlggydpelaklspgllllweliedaaeeGlrrfdl 133
                     + + + g+pv+++l+   +d l    ++++ ++ + ++g++ll ++ie a++ G+  + l
      CTQ26273.1  64 LLAVAAGQPVGFILTEPLDDALFIVEVAVHQAWQQQGIGRMLLERVIESARQMGYPAVTL 123
                     456679************************************************987765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.6
  Acetyltransf_6  30 dleallelfraqwarrpdvfadpl 53 
                     +l a l+++r+q +r+ ++  +p+
      CTQ26273.1 148 TLPAGLAAKREQETRH-GL--PPE 168
                     5667788888887777.43..344 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   6.2e-06    0.0093      22      63 ..      82     123 ..      63     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.2e-06
  Acetyltransf_CG  22 egvldfthTeVpeelrGkGiAkkLvkaalddareeglkvvpt 63 
                      ++ l +  + V+++ + +Gi++ L +++++ ar+ g+  v +
       CTQ26273.1  82 DDALFIVEVAVHQAWQQQGIGRMLLERVIESARQMGYPAVTL 123
                      567889999*************************99876655 PP

>> DUF2156  Uncharacterised conserved protein (DUF2156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   8.9e-06     0.013     171     251 ..      53     129 ..      12     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.9e-06
                 HHCHHHHTSEEEEEEE.TTEEEEEEEEEEECTTTEEEEEEEEE-TT.STTHHHHHHHHHHHHCHHTT-SEEEEEEE..... CS
     DUF2156 171 fdelddldlrglvvrdeegrivAftsfeplngkdglsldlmRrdpdapnGlmefliaelaeelkeegveyvsLgfaplagl 251
                  ++++++    l++++  g++v+f++ epl+ ++ + + +  +++   +G+  +l  +++e +++ g+  v   ++ ++++
  CTQ26273.1  53 RHHDYLETEHSLLAVA-AGQPVGFILTEPLD-DALFIVEVAVHQAWQQQGIGRMLLERVIESARQMGYPAVT--LTTFREV 129
                 4566666666677777.9*************.89*******999999************************9..5666665 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   9.4e-06     0.014      49     138 ..      61     145 ..      12     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.4e-06
  Acetyltransf_4  49 eyvflvaesdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFelvg 138
                     e  +l+  +++ vG    + +++       +++v + +++ +++g+gr l++ +++ ++++++   +  ++ +   ++ f+ +lGF ++ 
      CTQ26273.1  61 EHSLLAVAAGQPVGFILTEPLDD----ALFIVEVAV-HQAWQQQGIGRMLLERVIESARQMGYPAVTLTTFREVPWNAPFYTRLGFAMLD 145
                     45556666788888888887777....889999999.599*******************************99889**********9986 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.6e-05     0.084      23      81 ..      86     145 ..      71     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.6e-05
                 SEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HH.HHHHHHHHT-EEEE CS
        FR47  23 elgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtp.sirlyeklGfekie 81 
                 ++  + v++  +++G g+ l + +++  ++ g+ ++ ++   + p    +y++lGf  ++
  CTQ26273.1  86 FIVEVAVHQAWQQQGIGRMLLERVIESARQMGYPAVTLTTFREVPwNAPFYTRLGFAMLD 145
                 5778999**************************9999888888773456*******8765 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00013      0.19       5      23 ..      50      68 ..      46      74 .. 0.87
   2 ?   -1.8   0.0       2.5   3.7e+03      37      51 ..      99     113 ..      96     116 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                HHHTTCSSB-HHHHHHHHH CS
       Clp_N  5 AkslghqyistEHLLlALl 23
                + +++h y++tEH LlA++
  CTQ26273.1 50 SVARHHDYLETEHSLLAVA 68
                6799***********9986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.5
                 TTSSHHHHHHHHHHH CS
       Clp_N  37 aGvdldalrkaiekl 51 
                 +G+    l++ ie++
  CTQ26273.1  99 QGIGRMLLERVIESA 113
                 444445555555555 PP

>> DUF1999  Protein of unknown function (DUF1999)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.7e-05      0.12       5     111 ..      14     114 ..      11     132 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.7e-05
     DUF1999   5 tleeaDfaalqaldlavlr..eedpafdalpereregrlrtslaaLkfyeRsehsfvaeeegelrGlvlaqsvWqGDrpivlvrrlllaeaadaevaaG 101
                   +e+D a l a+++++ +  ++ p++  l++ e       s+a  + y  +ehs +a+ +g+  G++l   +   D ++ +v   + ++ +++ + + 
  CTQ26273.1  14 LTQESDIALLPAIERSAAQafRQIPSLAWLADSEV-----ISVARHHDYLETEHSLLAVAAGQPVGFILTEPL---DDALFIVEVAVHQAWQQQGIGRM 104
                 55677777777777655441244566666666654.....45555667999********************98...77777777666666689999999 PP

     DUF1999 102 LlravvksaY 111
                 Ll+ v+ sa 
  CTQ26273.1 105 LLERVIESAR 114
                 9999999996 PP

>> CSTF_C  Transcription termination and cleavage factor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00015      0.23      12      36 ..      11      36 ..      10      37 .. 0.83
   2 ?   -2.5   0.0       2.7     4e+03      23      28 ..     165     170 ..     163     174 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
      CSTF_C 12 VLqLsee.qIaaLPpdqRrsImiLrq 36
                VL L++e +Ia+LP+ +R+  +  rq
  CTQ26273.1 11 VLRLTQEsDIALLPAIERSAAQAFRQ 36
                999998747*********98776665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.7
      CSTF_C  23 LPpdqR 28 
                 LPp+ R
  CTQ26273.1 165 LPPESR 170
                 999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1393.35
//
Query:       CTQ26274.1  [L=278]
Description: putative N-acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-20   71.8   0.0    3.2e-13   49.9   0.0    2.2  2  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.5e-18   66.9   0.0      3e-11   43.4   0.0    2.1  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
    3.7e-16   59.3   0.0    1.7e-10   41.2   0.0    2.2  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
    3.1e-13   49.5   0.2    6.2e-09   35.7   0.1    2.3  2  FR47             FR47-like protein
    3.3e-06   27.8   0.1    0.00018   22.2   0.0    2.2  2  Acetyltransf_3   Acetyltransferase (GNAT) domain
    4.9e-05   23.5   0.0    0.00063   19.9   0.0    2.1  2  Acetyltransf_4   Acetyltransferase (GNAT) domain
     0.0001   22.4   0.4       0.32   11.2   0.0    2.7  3  Acetyltransf_CG  GCN5-related N-acetyl-transferase
    0.00018   21.3   0.2        0.5   10.1   0.1    2.6  3  PanZ             Acetyltransferase (GNAT) domain, PanZ
     0.0002   21.3   0.1       0.01   15.8   0.0    3.3  4  Acetyltransf_13  ESCO1/2 acetyl-transferase
    0.00021   21.0   0.1    0.00074   19.2   0.0    1.8  2  Acetyltransf_8   Acetyltransferase (GNAT) domain
     0.0012   19.0   0.0      0.045   13.8   0.0    2.4  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.017   14.6   0.0       0.88    9.0   0.0    2.3  2  Acetyltransf_15  Putative acetyl-transferase
      0.023   14.9   0.3      0.057   13.6   0.1    1.8  2  Acetyltransf_6   Acetyltransferase (GNAT) domain
       0.13   12.1   0.0        7.3    6.5   0.0    2.3  2  Acetyltransf_18  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   2.5e-16   3.2e-13      37     117 .]      51     130 ..      14     130 .. 0.76
   2 !   20.0   0.0   4.9e-07   0.00062      58      94 ..     203     239 ..     181     259 .. 0.77

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 2.5e-16
                     E...EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  37 v...aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                         ++ ++e+++ + +  +       a +  +a +p++rgkGlG++L+++l+  + ++gi+ ++l+v  dn+aa++lY+ lGF
      CTQ26274.1  51 DsrvWLAGDEPAAIAIVARRGS----AARLAAFALRPAWRGKGLGRKLMQELLMLLQQQGIETVFLEVIRDNHAAVALYQSLGF 130
                     2444556677777777777777....79999***********************9************************88**9 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 4.9e-07
                     TTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTE CS
  Acetyltransf_1  58 ggvayieslaVspeyrgkGlGsaLlealeerareegi 94 
                     g + ++ +l+V p++r++Gl+++Ll al++++   g 
      CTQ26274.1 203 GSRPVLSFLWVEPAARRQGLARELLMALAQQFPGIGT 239
                     4567899***********************9887765 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   2.3e-14     3e-11      31     108 ..      52     132 ..      30     136 .. 0.82
   2 !   21.5   0.0   1.4e-07   0.00018      39     114 ..     192     264 ..     184     270 .. 0.76

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 2.3e-14
  Acetyltransf_10  31 alllvaeeggkivGvielrdgs..hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFka 108
                        +++a ++   + +++ r+gs  +++ ++ +p++rg+G+g++L+++++  ++++gi++  l+v  ++ +av++Y++lGF++
       CTQ26274.1  52 SRVWLAGDEPAAIAIVA-RRGSaaRLAAFALRPAWRGKGLGRKLMQELLMLLQQQGIETvFLEVIRDNhAAVALYQSLGFTR 132
                      55677755555555553.444457********************************************9***********86 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.4e-07
  Acetyltransf_10  39 ggkivGviel.rdgshisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavgeeqe 114
                      +++   v+++  ++  +s l V+p++r+qG++++Ll+a+ +++   gi+  ++v    +  p++   G+ a++ +q+
       CTQ26274.1 192 EQRAFAVLTTaGSRPVLSFLWVEPAARRQGLARELLMALAQQF--PGIG--TSVTVPETFTPLFAAAGYAALTLQQY 264
                      5566666766577779*************************98..3444..55555567778888888888776666 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   1.3e-13   1.7e-10       3      75 ..      52     131 ..      50     132 .. 0.65
   2 !   16.1   0.0   8.8e-06     0.011      27      51 ..     208     235 ..     186     263 .. 0.68

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.3e-13
                     EEEEEEEETTEEEEEEEEEEES..TCTEEEEE-GGGTTSSHHHHHHHH.....TTSEEEEE.EEEE..THHHHHHHHHHTTEE CS
  Acetyltransf_7   3 gevfVaeddgkivGfialslld..aeitrlaVdpeyrgkGiGraLlea.....aekgiile.qlel..naekaikfYeklGFe 75 
                     ++v++a d+   +   ++++++  a +  +a +p++rgkG+Gr+L++      +++gi+ +  le+  ++++a+++Y++lGF+
      CTQ26274.1  52 SRVWLAGDEPAAIA--IVARRGsaARLAAFALRPAWRGKGLGRKLMQEllmllQQQGIE-TvFLEVirDNHAAVALYQSLGFT 131
                     56887744433333..3333334466666*****************9645554338865.333333544449999*******8 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 8.8e-06
                     TEEEEE-GGGTTSSHHHHHHHH..TT.S CS
  Acetyltransf_7  27 itrlaVdpeyrgkGiGraLlea..ae.k 51 
                     + +l+V p++r++G++r+Ll a  ++  
      CTQ26274.1 208 LSFLWVEPAARRQGLARELLMAlaQQfP 235
                     4459***************986322143 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.1   4.8e-12   6.2e-09      12      80 ..      63     133 ..      56     137 .. 0.86
   2 !   11.7   0.0   0.00015      0.19      23      58 ..     207     242 ..     191     265 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 4.8e-12
                 EEEEEEE-TT.SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S.-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  12 laawilrkdg.gelgalqvlpehrrrGlgsrlvkalakeiaergk.tvllvvvasNtpsirlyeklGfeki 80 
                 ++a + r+ +   l a  ++p  r++Glg++l ++l   + ++g+ tv+l v  +N+++ +ly++lGf+ +
  CTQ26274.1  63 AIAIVARRGSaARLAAFALRPAWRGKGLGRKLMQELLMLLQQQGIeTVFLEVIRDNHAAVALYQSLGFTRR 133
                 555555665558899***************************996389999*****************975 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00015
                 SEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EE CS
        FR47  23 elgalqvlpehrrrGlgsrlvkalakeiaergktvl 58 
                  l+ l v+p +rr+Gl++ l  ala++    g  v+
  CTQ26274.1 207 VLSFLWVEPAARRQGLARELLMALAQQFPGIGTSVT 242
                 689999*******************98766666555 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.4e-07   0.00018      85     138 .]      79     131 ..      32     131 .. 0.92
   2 ?    3.6   0.0     0.076        97      85     107 ..     211     233 ..     192     252 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.4e-07
  Acetyltransf_3  85 ymlapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     + l+p+++gkG+++  ++ ll ++ +++g+e+++ ++  +N+a ++++++lGf+
      CTQ26274.1  79 FALRPAWRGKGLGRKLMQELLMLL-QQQGIETVFLEVIRDNHAAVALYQSLGFT 131
                     779999******************.8889************************6 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.076
  Acetyltransf_3  85 ymlapsfwgkGyateavralley 107
                     +++ p+++++G+a+e + al + 
      CTQ26274.1 211 LWVEPAARRQGLARELLMALAQQ 233
                     588999**********9998775 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.9e-07   0.00063      88     135 ..      84     131 ..      61     135 .. 0.89
   2 ?    1.1   0.0       0.3   3.8e+02      79     105 ..     208     233 ..     196     241 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.9e-07
  Acetyltransf_4  88 dnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFe 135
                     + + +glgr+l++ l   l++q+ie+ + e++ +n ++++++++lGF+
      CTQ26274.1  84 AWRGKGLGRKLMQELLMLLQQQGIETVFLEVIRDNHAAVALYQSLGFT 131
                     55779******************************************7 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.3
  Acetyltransf_4  79 elsvylaerdnnkeglgrelidaleqv 105
                     + + ++ e +++ +gl+rel+ al q 
      CTQ26274.1 208 LSFLWV-EPAARRQGLARELLMALAQQ 233
                     455678.589***********999875 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.2   2.8e+03      38      51 ..      69      82 ..      63      84 .. 0.86
   2 !   11.2   0.0   0.00025      0.32      34      59 ..      83     108 ..      79     112 .. 0.89
   3 !    8.1   0.0    0.0023       2.9      26      52 ..     207     233 ..     187     243 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.2
  Acetyltransf_CG 38 GkGiAkkLvkaald 51
                     ++G A++L+  al 
       CTQ26274.1 69 RRGSAARLAAFALR 82
                     79*******99986 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00025
  Acetyltransf_CG  34 eelrGkGiAkkLvkaalddareeglk 59 
                      ++ rGkG+++kL+++ l   +++g  
       CTQ26274.1  83 PAWRGKGLGRKLMQELLMLLQQQGIE 108
                      889***************99999975 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0023
  Acetyltransf_CG  26 dfthTeVpeelrGkGiAkkLvkaaldd 52 
                      ++    V+++ r++G+A++L  a  ++
       CTQ26274.1 207 VLSFLWVEPAARRQGLARELLMALAQQ 233
                      555568**************9988765 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00039       0.5      54      90 ..      66     102 ..      59     137 .. 0.71
   2 ?   -0.9   0.0         1   1.3e+03      72      94 ..     130     152 ..     111     169 .. 0.82
   3 !    8.3   0.0    0.0015       1.9      57     120 ..     201     264 ..     193     272 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00039
        PanZ  54 kveledkeaelsdlcVRevTRrRGVgsyLleearrqa 90 
                  v +++++a+l  +  R   R +G g++L++e +  +
  CTQ26274.1  66 IVARRGSAARLAAFALRPAWRGKGLGRKLMQELLMLL 102
                 5788999***********************9976544 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1
        PanZ  72 vTRrRGVgsyLleearrqaPevk 94 
                  TRr G   yL +e +   P v 
  CTQ26274.1 130 FTRRYGLCGYLSTELLPPVPGVL 152
                 69999999999999888888775 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0015
        PanZ  57 ledkeaelsdlcVRevTRrRGVgsyLleearrqaPevkswvlaeedvkeldlavlqaflealgf 120
                 + ++   ls l V    Rr G ++ Ll    +q P + + v   e++++l +a+  a l+ +++
  CTQ26274.1 201 TAGSRPVLSFLWVEPAARRQGLARELLMALAQQFPGIGTSVTVPETFTPLFAAAGYAALTLQQY 264
                 555666799999*************************999998888888777766666666666 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.93   1.2e+03      14      28 ..      83      97 ..      81     102 .. 0.85
   2 ?   -0.9   0.0       1.3   1.7e+03      17      34 ..     103     120 ..      99     127 .. 0.85
   3 ?   -0.1   0.0      0.76   9.7e+02      26      55 ..     176     205 ..     174     211 .. 0.76
   4 !   15.8   0.0   7.9e-06      0.01       8      33 ..     209     234 ..     207     242 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.93
  Acetyltransf_13 14 sshRrkgiAtkLlda 28
                     +++R kg+ +kL++ 
       CTQ26274.1 83 PAWRGKGLGRKLMQE 97
                     6789********975 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
  Acetyltransf_13  17 RrkgiAtkLldaarenfi 34 
                      +++gi t  l+++r+n+ 
       CTQ26274.1 103 QQQGIETVFLEVIRDNHA 120
                      5799*********99975 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.76
  Acetyltransf_13  26 ldaarenfiyglelekeevAFsqPTesGkk 55 
                      ld +   ++    ++ e+ AF+  T +G +
       CTQ26274.1 176 LDPLTFATLPCQVVTLEQRAFAVLTTAGSR 205
                      5555555666677899999********976 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 7.9e-06
  Acetyltransf_13   8 sriWvssshRrkgiAtkLldaarenf 33 
                      s +Wv +++Rr+g+A++Ll a++++f
       CTQ26274.1 209 SFLWVEPAARRQGLARELLMALAQQF 234
                      568****************9999987 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.8e-07   0.00074      89     139 ..      83     132 ..      67     135 .. 0.91
   2 ?   -1.8   0.0       1.8   2.3e+03      87     106 ..     213     232 ..     208     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.8e-07
                     HHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EE CS
  Acetyltransf_8  89 aeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfek 139
                     ++ rgkgl+++l+++l+ +l ++ +++ v +E   +N++a++l++++Gf++
      CTQ26274.1  83 PAWRGKGLGRKLMQELLMLLQQQ-GIETVFLEVIRDNHAAVALYQSLGFTR 132
                     7899************9877666.*************************87 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
                     SSHHHCTTTCHHHHHHHHHH CS
  Acetyltransf_8  87 geaeargkglttallralvh 106
                      e++ar++gl+++ll al++
      CTQ26274.1 213 VEPAARRQGLARELLMALAQ 232
                     47889999999999999876 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.5e-05     0.045      70     126 ..      70     131 ..      15     133 .. 0.91
   2 ?    2.8   0.0     0.088   1.1e+02      81     102 ..     213     234 ..     206     258 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.5e-05
                     EEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--.....SSHHHHHTTT-E CS
  Acetyltransf_9  70 tlkaagvtgVavapehrgrgvlskLlaraleemreegqplsllfP.....ssipiYrrfGye 126
                     +  aa +++ a  p  rg+g+ +kL++++l  ++++g++ ++l       +++++Y+++G+ 
      CTQ26274.1  70 RGSAARLAAFALRPAWRGKGLGRKLMQELLMLLQQQGIETVFLEVirdnhAAVALYQSLGFT 131
                     556788899999*******************************9988888889999999995 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.088
                     E-CCGTTS-HHHHHHHHHHHHH CS
  Acetyltransf_9  81 vapehrgrgvlskLlaraleem 102
                     v p  r++g++++Ll ++ ++ 
      CTQ26274.1 213 VEPAARRQGLARELLMALAQQF 234
                     8999***********9887766 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00069      0.88      80     138 ..      81     132 ..      75     142 .. 0.85
   2 ?    3.2   0.0      0.04        51      78      99 ..     211     232 ..     199     267 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00069
  Acetyltransf_15  80 vsekyrgkGlakklLeeslkelkknYkvdnelllaLHlnpkDksMnisfalYyslgFrk 138
                        + +rgkGl +kl++e l+ l    + + ++ + L +    ++ + + alY+slgF +
       CTQ26274.1  81 LRPAWRGKGLGRKLMQELLMLL----QQQGIETVFLEVI---RDNHAAVALYQSLGFTR 132
                      5799**************9999....8888999999886...44578999999999976 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.04
  Acetyltransf_15  78 lyvsekyrgkGlakklLeeslk 99 
                      l+v++  r++Gla++lL+   +
       CTQ26274.1 211 LWVEPAARRQGLARELLMALAQ 232
                      7999*************98765 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   4.5e-05     0.057      72     131 ..      51     110 ..      30     119 .. 0.83
   2 ?   -2.8   0.0       4.9   6.2e+03     104     119 ..     215     230 ..     195     237 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.5e-05
  Acetyltransf_6  72 rlyvlrldgrpvAvalglrsgdrlyywlggydpelaklspgllllweliedaaeeGlrrf 131
                        v  ++++p+A+a++ r g  + +   + +p++++ ++g+ l++el+  + ++G++++
      CTQ26274.1  51 DSRVWLAGDEPAAIAIVARRGSAARLAAFALRPAWRGKGLGRKLMQELLMLLQQQGIETV 110
                     34555679****************************************999999999876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.9
  Acetyltransf_6 104 pelaklspgllllwel 119
                     p++++ ++ + ll+ l
      CTQ26274.1 215 PAARRQGLARELLMAL 230
                     4443333333333333 PP

>> Acetyltransf_18  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0057       7.3      63     101 ..      95     132 ..      91     136 .. 0.84
   2 ?    3.2   0.0     0.056        72      57      86 ..     217     246 ..     204     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0057
  Acetyltransf_18  63 AeaLlkalvanaegkkvridvpeenkalielleklgfke 101
                       ++Ll+ l ++  +  v + v   n+a+++l ++lgf++
       CTQ26274.1  95 MQELLMLLQQQGIET-VFLEVIRDNHAAVALYQSLGFTR 132
                      567787777777777.*********************97 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.056
  Acetyltransf_18  57 AeneeiAeaLlkalvanaegkkvridvpee 86 
                      A+ +  A++Ll+al+++  g    + vpe+
       CTQ26274.1 217 ARRQGLARELLMALAQQFPGIGTSVTVPET 246
                      778889999******999998899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2086.69
//
Query:       CTQ26275.1  [L=453]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-59  201.6  43.1    3.6e-57  193.9  37.8    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.035   12.4  21.2      0.076   11.3   0.1    4.0  4  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.9  37.8     4e-61   3.6e-57       1     353 []      47     408 ..      47     408 .. 0.87
   2 !   15.3   1.2   8.1e-07    0.0073     124     178 ..     394     448 ..     390     453 .] 0.80

  Alignments for each domain:
  == domain 1  score: 193.9 bits;  conditional E-value: 4e-61
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+laa++++l+rs l++a   ++ ++lg++++eig ll++++l++++a+lp G+l dr G+r +l lg+++++l+ +l  +++s++ ++++r+ +G+g+
  CTQ26275.1  47 LFLAAVINYLDRSSLSVANL-TIRQELGLNATEIGALLSVFSLAYGIAQLPCGPLLDRKGPRIMLGLGMFFWSLFQALSGMVHSFTQFVLVRIGMGIGE 144
                 79*****************9.******************************************************44444569988************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......kgtg 192
                 + ++p g+ +i dwf+ +ergr +g+++a++ +G+++ p++ ++++   gWr++f+ ++i++++ ++ +++l++ ++  + +  ++  +      +++ 
  CTQ26275.1 145 APMNPCGVKVINDWFNIKERGRPMGFFNAASTIGVAVSPPILAAMMLMMGWRWMFITIGILGIFIAIGWYMLYRNREDLPLTADEQAYLnagsvnVRRD 243
                 **************************************999999999******************9977777766666666666555559999999*** PP

       MFS_1 193 paplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr......lgrrrrlllalllll 285
                 p ++++ w++l+k++ +w +++++ ++    +++l++lp ylq+ ++l+ l ++g++ a+++l+ga+++l+ g++ d        + + r + ++++++
  CTQ26275.1 244 PLSFAE-WRSLFKNKTMWGMMLGFSGINYTAWLYLAWLPGYLQTAYNLD-LKSTGFMAAIPFLFGAAGMLINGYVTDWlvkggmAPIKSRKICIIAGMF 340
                 ******.********999999999999999999****************.****************************666664333888888888888 PP

       MFS_1 286 laalglallavtssavllll....vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 ++a++ +++++++++++++l    +l++i f++  +++++ +++++ +    ++++ ++ n+a+ + ++++p
  CTQ26275.1 341 CSAAFTLIVPHATTSFAAVLligmALFCIHFAGTSCWGLIHVAVASRM----TASVGSIQNFASFICASFAP 408
                 888888888888555555544455555566655555555555555555....89999999999999999987 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 8.1e-07
       MFS_1 124 gllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeeppe 178
                 ++ + ++ + a ++p++ g+++ +  +++++ +i++ v++l+++ ++++l++ p +
  CTQ26275.1 394 SIQNFASFICASFAPVVTGFIVdTTHSFQLALVICGCVTALGAL-AYIFLVRQPIS 448
                 566777888899**********99999***************88.45555555444 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2    0.0085        76       3      87 ..      44     128 ..      42     133 .. 0.83
   2 ?   11.3   0.1   8.5e-06     0.076     132     184 ..     130     182 ..     122     202 .. 0.89
   3 ?   10.1   3.2   1.9e-05      0.17     287     381 ..     250     346 ..     195     351 .. 0.80
   4 ?   -0.5   3.3     0.032   2.9e+02     460     524 ..     353     418 ..     350     421 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.0085
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP   3 lvllsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslllalPh 87 
                 ++ll l+++++ +  + ++++  ti ++ +l+ +++g ++s++ +++ ++ l  + + +r     ++g+g+++ +l+  l  + h
  CTQ26275.1  44 MILLFLAAVINYLDRSSLSVANLTIRQELGLNATEIGALLSVFSLAYGIAQLPCGPLLDRKGPRIMLGLGMFFWSLFQALSGMVH 128
                 556667777777777888888889*************************999999999998777789999999999988877766 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 8.5e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 132 vllfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalG 184
                 ++ f+l  + +GiG++p+ + G+  i D  + k+    +g++ a++++G+a+ 
  CTQ26275.1 130 FTQFVLVRIGMGIGEAPMNPCGVKVINDWFNIKERGRPMGFFNAASTIGVAVS 182
                 457999999****************************************9985 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 1.9e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 287 lkrllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvk...klklsakklaklvlvvsllslllll 381
                  ++l+kn++++ ++l+     + +  + ++lp yl+t ++l  ++  +++ ++  +++a+G+l+ G+++    k  + + k  k+++++++++ + + 
  CTQ26275.1 250 WRSLFKNKTMWGMMLGFSGINYTAWLYLAWLPGYLQTAYNLDLKSTGFMA-AIPFLFGAAGMLINGYVTDwlvKGGMAPIKSRKICIIAGMFCSAAFT 346
                 57899*****99999877777777789**************998888775.555566788********993334456666677777777776665544 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.032
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 460 lllflillflvsflgalgrvpallvilRcVkkedksfa.lGlqlllirllgliPgPiifGaiiDst 524
                 +  f ++l+++++l ++   ++    l  V+   +  a +G ++ + +++ +  +P++ G+i+D+t
  CTQ26275.1 353 TTSFAAVLLIGMALFCIHFAGTSCWGLIHVAVASRMTAsVGSIQNFASFICASFAPVVTGFIVDTT 418
                 56799999999999999999999988888888887554399999999999999***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 3480.17
//
Query:       CTQ26278.1  [L=340]
Description: putative oxidoreductase, Zn-dependent and NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-33  112.8   2.1    1.7e-32  111.5   2.1    1.7  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    1.1e-19   70.7   0.0    1.9e-19   69.9   0.0    1.4  1  ADH_zinc_N       Zinc-binding dehydrogenase
      8e-11   41.8   0.1    1.1e-10   41.4   0.1    1.1  1  Glu_dehyd_C      Glucose dehydrogenase C-terminus
    1.6e-06   27.6   0.3    2.4e-06   27.0   0.3    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
    7.9e-05   23.7   0.3    0.00026   22.0   0.2    1.8  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
     0.0012   18.8   0.0      0.002   18.1   0.0    1.3  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
     0.0012   18.2   0.0     0.0022   17.4   0.0    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
     0.0048   17.0   0.5      0.023   14.8   0.1    2.0  2  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin
     0.0088   14.8   0.7      0.012   14.3   0.7    1.2  1  HI0933_like      HI0933-like protein
     0.0089   15.3   0.1      0.014   14.6   0.1    1.3  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
  ------ inclusion threshold ------
      0.013   14.7   0.5       0.02   14.1   0.5    1.2  1  FAD_binding_3    FAD binding domain
      0.014   14.7   0.8      0.026   13.8   0.8    1.4  1  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
      0.015   15.5   0.1      0.028   14.7   0.1    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.02   15.0   0.1      0.037   14.1   0.1    1.3  1  DapB_N           Dihydrodipicolinate reductase, N-terminus
      0.027   15.0   0.4       0.15   12.5   0.4    2.0  1  XdhC_C           XdhC Rossmann domain
      0.032   14.8   0.1      0.064   13.8   0.1    1.5  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      0.045   14.0   0.0      0.087   13.1   0.0    1.4  1  TrkA_N           TrkA-N domain
      0.054   13.7   0.6       0.11   12.7   0.6    1.5  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
      0.054   12.6   2.2      0.084   11.9   2.2    1.3  1  FAD_binding_2    FAD binding domain
      0.089   12.2   0.4       0.21   11.0   0.1    1.6  2  adh_short        short chain dehydrogenase
       0.09   13.2   0.0       0.18   12.2   0.0    1.5  1  NAD_binding_7    Putative NAD(P)-binding
       0.11   12.7   0.0       0.18   12.0   0.0    1.3  1  Egg_lysin        Egg lysin (Sperm-lysin)
       0.14   12.2   0.0       0.26   11.3   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
       0.14   11.3   0.6       0.29   10.4   0.3    1.6  2  Thi4             Thi4 family
        0.2   10.9   4.9       0.33   10.2   4.9    1.3  1  FAD_oxidored     FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   2.1   2.4e-35   1.7e-32       2     107 ..      28     132 ..      27     134 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 2.4e-35
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvsldGgfaeyvv 100
                 +evlik+ka+giCg+D+h + g +++  ++p +lGHEi+Ge+  +g+++ +lk G++V+v p ++c +C+aC +g++n+Ce+ +++gv++dGgf+ey++
  CTQ26278.1  28 DEVLIKIKAVGICGTDIHAWGG-NQPFFSYPRVLGHEICGEIIGLGKNILNLKSGQQVAVIPYVACRHCPACLSGRTNCCENISVIGVHRDGGFSEYLC 125
                 89******************99.8*************************************************************************** PP

                 ECGGGEE CS
       ADH_N 101 vpekklv 107
                 vp ++l+
  CTQ26278.1 126 VPVNNLL 132
                 **88876 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   2.7e-22   1.9e-19       1     128 [.     173     299 ..     173     301 .. 0.93

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 2.7e-22
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakk.lGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeef 97 
                 ++Gl a ++Aka Ga+v+++d s+ +++ +++ lG   ++++ ++  + e++ + ++g  ++ v++++G+++++++ ++l+++gG + +vG++kge +f
  CTQ26278.1 173 PIGLGAAAIAKADGAQVVVADTSPARRDHVAQhLGL-TTLDP-SDpLFTEQLSATFDGSLAQKVIDATGNQQAMNNTVNLIRHGGSIIFVGLFKGELQF 269
                 79**************************999989*5.56777.4448**************************************************** PP

                 EHHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  98 dlrnlllkeksilGsllgslreefkealdll 128
                 +   +++ke++++Gs  ++  e+f+++ +l+
  CTQ26278.1 270 SDPEFHKKETTMMGSRNAT-EEDFAKVGRLM 299
                 ******************9.99999887776 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.1   1.5e-13   1.1e-10       6     212 .]     144     340 .]     140     340 .] 0.78

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1.5e-13
  Glu_dehyd_C   6 LvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYvdsre.tpvdeipeasee.. 100
                  L+EP +i++       a+r a+    +++lv+GaG++GL a+a+ +a  +g + v v +    p ++ ++ ++lG t  d +     ++++++     
   CTQ26278.1 144 LIEPFAISAH------AVRRAAIQPGDQVLVVGAGPIGLGAAAIAKA--DGAQ-VVVAD--TSPARRDHVAQHLGLTTLDPSDpLFTEQLSATFDGsl 230
                  5666666554......455555666789***********99655554..6665.65666..577888899******9999654145566666544322 PP

  Glu_dehyd_C 101 mdlvvEaTGsakhafeaiealapnGvaaLlGvpedsevevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdldeleeA 198
                   + v++aTG+ +++ ++++ ++  G ++ +G+ +++ +++   e+h++     + ++Gs Na  + f++   +L +  +   + ++t+++d+++l+e 
   CTQ26278.1 231 AQKVIDATGNQQAMNNTVNLIRHGGSIIFVGLFKGE-LQFSDPEFHKK----ETTMMGSRNATEEDFAKVG-RLMTEGKVTARMMLTHRYDFKSLAEI 322
                  678*****************************9987.77777788876....899************8855.5666667778999************* PP

  Glu_dehyd_C 199 fe....dddetiKtvvel 212
                  +e    ++ + iK v+++
   CTQ26278.1 323 YEseviNNRQLIKGVIHF 340
                  *97777778889999876 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.3   3.4e-09   2.4e-06      30      74 ..     165     210 ..     149     253 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 3.4e-09
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCE CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakf 74 
                  +vlv+G+G  Gl A+a+ak+ ga+V+v D++par+ ++ + lg ++
   CTQ26278.1 165 QVLVVGAGPIGLGAAAIAKADGAQVVVADTSPARRDHVAQhLGLTT 210
                  79**********************************9998666654 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.2   3.7e-07   0.00026      20     117 ..     228     321 ..     176     324 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 3.7e-07
                   TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH--..--EEEEEEGGG CS
  ADH_zinc_N_2  20 gegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGklr..pvvdrvfplee 114
                   g   + v+d++g+++++ ++++++++gG ++ +g    +++ l+ +   + ++  ++++ s++a+  +d ++++++l+ eGk++  + ++++++++ 
    CTQ26278.1 228 GSLAQKVIDATGNQQAMNNTVNLIRHGGSIIFVGL---FKGELQFSD-PEFHKKETTMMGSRNAT-EED-FAKVGRLMTEGKVTarMMLTHRYDFKS 318
                   455678******88888*******999*****994...344444444.67778888888865555.666.************752267778899988 PP

                   HHH CS
  ADH_zinc_N_2 115 aae 117
                   +ae
    CTQ26278.1 319 LAE 321
                   876 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.7e-06     0.002       1      42 [.     165     206 ..     165     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.7e-06
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseealekaleki 42 
                 +v v+GaG +G g aa++ + g +Vv+ d+s+++ +++++++
  CTQ26278.1 165 QVLVVGAGPIGLGAAAIAKADGAQVVVADTSPARRDHVAQHL 206
                 588*****************************9998888776 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     3e-06    0.0022      36      78 ..     163     206 ..     152     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3e-06
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH.CHHHH CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkee.eeeel 78 
                   g +v ++G+G IG  +a ++ka g++v++ d+s+ +++  +++l
    CTQ26278.1 163 GDQVLVVGAGPIGLGAAAIAKADGAQVVVADTSPARRDhVAQHL 206
                   67899****************************99777333333 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   3.2e-05     0.023      21      56 ..     161     196 ..     152     212 .. 0.89
   2 ?   -0.2   0.0       1.3   9.1e+02      79     121 ..     231     272 ..     219     303 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.2e-05
                    -TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-H CS
  AdoHcyase_NAD  21 laGkvavvaGyGdvGkGcaaslkglGarvivtevdP 56 
                      G +++v+G G +G G+aa  k+ Ga+v+v++  P
     CTQ26278.1 161 QPGDQVLVVGAGPIGLGAAAIAKADGAQVVVADTSP 196
                    5699***************************99887 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.3
                    -SEEEE-SSSSSSB-HHHHCCS-TTEEEEE-SSTTTTBTHHHH CS
  AdoHcyase_NAD  79 adivvtttGnkdiitlehlkkmkddaivcniGhfdseidvaal 121
                    a+ v+ +tGn++ ++ ++++ +++   +  +G f+ e++ +  
     CTQ26278.1 231 AQKVIDATGNQQAMN-NTVNLIRHGGSIIFVGLFKGELQFSDP 272
                    566899999999765.678888888888889999999887654 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.7   1.7e-05     0.012       2      32 ..     165     195 ..     164     202 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVllleka 32 
                  +v+v+G+G+ Gl aA+ a++ g++V++ +  
   CTQ26278.1 165 QVLVVGAGPIGLGAAAIAKADGAQVVVADTS 195
                  799************************9976 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1     2e-05     0.014     133     174 ..     152     195 ..     129     212 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2e-05
                  HHHHCCSS-T..SEEEEES-SHHHHHHHHHHHHHT-EEEEEESS CS
                  xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 133 aealklkllp..krivvvGgGyiGvElAaalaklgkevtlvear 174
                  a a++++  +  ++++vvG+G+iG+  Aa ++  g++v++ +  
   CTQ26278.1 152 AHAVRRAAIQpgDQVLVVGAGPIGLGAAAIAKADGAQVVVADTS 195
                  55555555556788999999999999999988889988765554 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.5   2.8e-05      0.02       3      32 ..     165     194 ..     164     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.8e-05
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvek 32 
                    +Vl+VGaGp Gl +a + +  G +vv+ + 
     CTQ26278.1 165 QVLVVGAGPIGLGAAAIAKADGAQVVVADT 194
                    7************************99875 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.8   3.6e-05     0.026       1      27 [.     167     192 ..     167     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.6e-05
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylil 27 
                  +++GaGP+Gl+aa  +k  g  ++++ 
   CTQ26278.1 167 LVVGAGPIGLGAAAIAKADGA-QVVVA 192
                  69****************999.57665 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   3.8e-05     0.028       1      57 [.     166     214 ..     166     258 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.8e-05
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TT CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdae 57 
                      vl++GaG +G ++a   ++ +    +++vad s ++ +++a+++       ++ld++
       CTQ26278.1 166 VLVVGAGPIGLGAAAIAKADGA---QVVVADTSPARRDHVAQHL-----GLTTLDPS 214
                      89***********999888875...8*************99764.....22333333 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   5.2e-05     0.037       3      96 ..     166     259 ..     165     271 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.2e-05
                 EEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTC.STTTTTBHHHHSSSS--S-BEBSSHHHHHHH..-SEEEE-S-HHHHHHHHHHHHHTT-EEEE CS
      DapB_N   3 vavvGasGrmGkevvkaveeaedlelvaavdrke.selegkdagellglgklgvavtddleevlek..advliDFTtpeavlenlklalekgvklVi 96 
                 v+vvGa G +G   +  +++ +++++v a  ++   +++++ +g l+ l++++  +t++l+++++   a+ +iD T  + +++n+  ++++g ++++
  CTQ26278.1 166 VLVVGA-GPIGLGAAAIAKA-DGAQVVVADTSPArRDHVAQHLG-LTTLDPSDPLFTEQLSATFDGslAQKVIDATGNQQAMNNTVNLIRHGGSIIF 259
                 89***9.****998877776.66666666444443777777777.677889999**********99999****************999999887775 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   0.00021      0.15       1      35 [.     166     214 ..     166     330 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00021
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG..............- CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefa..............t 35 
                 ++++Gag+++   a++a+a g +v+v+d+ ++ +              +
  CTQ26278.1 166 VLVVGAGPIGLGAAAIAKADGAQVVVADTSPARRdhvaqhlglttldpS 214
                 689***************************9743344444444444430 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   8.9e-05     0.064       2      32 ..     166     196 ..     165     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.9e-05
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversd 32 
                 v+vvG+G igl +A+++++ g++V v + s+
  CTQ26278.1 166 VLVVGAGPIGLGAAAIAKADGAQVVVADTSP 196
                 89**********************9988776 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00012     0.087       1      41 [.     166     206 ..     166     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00012
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTT CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeg 41 
                 ++++G+G +G   a   +++g +vvv d++++r ++++++ 
  CTQ26278.1 166 VLVVGAGPIGLGAAAIAKADGAQVVVADTSPARRDHVAQHL 206
                 68*****************7668**********99998876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6   0.00015      0.11       1      28 [.     168     195 ..     168     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00015
                    EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekr 28 
                    +vGaG  Gl aA+ ++ +g++v++ +++
     CTQ26278.1 168 VVGAGPIGLGAAAIAKADGAQVVVADTS 195
                    8***********************9976 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.2   0.00012     0.084       2      39 ..     166     203 ..     165     211 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggata 39 
                    v+V+G+G  GL AA+ a+  G++v+v +  ++++ + a
     CTQ26278.1 166 VLVVGAGPIGLGAAAIAKADGAQVVVADTSPARRDHVA 203
                    9**************9************9999887765 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00029      0.21       3      45 ..     166     207 ..     164     222 .. 0.92
   2 ?   -2.8   0.0         5   3.6e+03     125     135 ..     251     261 ..     229     268 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00029
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelk 45 
                 vlv+Ga+  IG+  a    ++Ga+vvv+d s+++  +va++l+
  CTQ26278.1 166 VLVVGAG-PIGLGAAAIAKADGAQVVVADTSPARRDHVAQHLG 207
                 8999998.8*******************************997 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5
                 HCTTEEEEEEE CS
   adh_short 125 kqssGrIvnvs 135
                  +++G+I++v+
  CTQ26278.1 251 IRHGGSIIFVG 261
                 37889999886 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00026      0.18       8      80 ..     164     249 ..     160     260 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00026
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleagakvtvvapevkeele......elvklaeee......lekdleg..adlviaatddrelneriae 80 
                     +vlvvG+G++++  +    + ga+v+v +   ++  +      +l +l +++      l++ ++g  a+ vi at +++  ++ ++
     CTQ26278.1 164 DQVLVVGAGPIGLGAAAIAKADGAQVVVADTSPAR-RDhvaqhlGLTTLDPSDplfteqLSATFDGslAQKVIDATGNQQAMNNTVN 249
                    68***************9999*****996655312.222444454445544433321113333333445577777777766665555 PP

>> Egg_lysin  Egg lysin (Sperm-lysin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00025      0.18      58      94 ..     274     316 ..     272     330 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00025
                 HHHHHHHCCT.S--SHHHHHHHHHHHHH.....HCHHHHHHHH CS
   Egg_lysin  58 wvskkirkLg.rkpnkkdyrrlGaeiGr.....ridlevfysf 94 
                 + +k++ ++g r+++++d++++G+ + +     r+ l ++y+f
  CTQ26278.1 274 FHKKETTMMGsRNATEEDFAKVGRLMTEgkvtaRMMLTHRYDF 316
                 6789999*******************88768888888888875 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00036      0.26      12      57 ..     163     207 ..     154     222 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00036
                   T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT CS
  Shikimate_DH  12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelk 57 
                   + +vl++GaG ++  +a    a g++ vvva  + +r +++a++l+
    CTQ26278.1 163 GDQVLVVGAGPIGLGAAAIAKADGAQ-VVVADTSPARRDHVAQHLG 207
                   579*********99988888878887.***************9985 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3    0.0004      0.29      19      49 ..     165     194 ..     156     198 .. 0.86
   2 ?   -3.6   0.0       7.2   5.2e+03     160     174 ..     232     246 ..     222     249 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0004
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvailer 49 
                  v++vGaG+ GL aa  +ak+ + +v++ + 
  CTQ26278.1 165 QVLVVGAGPIGLGAAA-IAKADGAQVVVADT 194
                 599*********9985.78888999999765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 7.2
                 EEEEE--GSSSTTTT CS
        Thi4 160 kvvvdatGhdgeiva 174
                 + v+datG +  + +
  CTQ26278.1 232 QKVIDATGNQQAMNN 246
                 568999998877765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.9   0.00047      0.33       2      31 ..     166     195 ..     165     198 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00047
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveer 31 
                   v+VvG+gp G+ AA  A+  Ga+v++ +++
    CTQ26278.1 166 VLVVGAGPIGLGAAAIAKADGAQVVVADTS 195
                   9************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2604.38
//
Query:       CTQ26279.1  [L=481]
Description: altronate oxidoreductase, NAD-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-66  222.6   0.0    6.8e-66  222.2   0.0    1.1  1  Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
    1.9e-32  112.5   0.0    3.1e-32  111.8   0.0    1.3  1  Mannitol_dh    Mannitol dehydrogenase Rossmann domain


Domain annotation for each model (and alignments):
>> Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.2   0.0   7.6e-70   6.8e-66       2     244 ..     204     456 ..     203     458 .. 0.94

  Alignments for each domain:
  == domain 1  score: 222.2 bits;  conditional E-value: 7.6e-70
  Mannitol_dh_C   2 svgfpntmVDRIvpaatddelakleeelgveDplavtvEpFiqWviednfvkgrpe...lelvgvelvedvepyeerKlriLNggHaalaylgala 94 
                    +++f++t+VDRIv++++++e +kle+elg++D++ +t+E F  +vi++++  +        ++++ +ved+ py++rK++iLNg+H+al++++ l 
     CTQ26279.1 204 ANTFCSTLVDRIVTGYPREEAEKLEAELGYHDAFLDTAEYFWLFVIQGPQGLAEMLrldRCPLNIRIVEDIRPYKARKVAILNGAHTALVPVAWLC 299
                    589**********************************************99884434447899********************************* PP

  Mannitol_dh_C  95 GyqtiheamkdeeiraivkkllteevapllkkvdeqdleeYadkiieRFsNpyikdtvervaldGsqklpkrilpslrrlika.gtlpellalgva 189
                    G++t+ eam de+ir++v++ + ee++p l+  ++++l ++ad++++RF Npyi++++  +al+G++k+++rilp+l   i++ g +p +l++++a
     CTQ26279.1 300 GVDTVGEAMRDEAIRHYVQQTIDEEIIPALDL-PAEELRQFADAVTGRFLNPYIRHQLLAIALNGMTKFRTRILPQLLTTIRQhGAIPPRLTFALA 394
                    ********************************.************************************************999************ PP

  Mannitol_dh_C 190 lwirylegvaeggnyiekeDpqleelqe.......aallakervkavlaekeileedlaqnk 244
                    ++i++++g ++g++y+ ++D+ + ++ +       +    +e v++vl+  ++++edl+ ++
     CTQ26279.1 395 ALIAFYRGQRDGQTYPLQDDEVWLTRFAegwaqvaNGSPLHELVTEVLQDAAHWGEDLTAIH 456
                    ***********************99888799766555666899**************99875 PP

>> Mannitol_dh  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.0   3.5e-36   3.1e-32       2     150 ..      17     172 ..      16     173 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 3.5e-36
                  EEEEES-SHHHHHTHHHHHHHHTT.--TT-EEEEEE-STTHHHHHHHTTTT-EEEEE-S.....SS---EEEE--EEEEEEGGG-HHHHHHHHTSTT- CS
  Mannitol_dh   2 rivhfGaGnfhRahqayiddLlae.egldwgivevnlrevdareaLkaqdelyvviekg.....eeskearlvgsvnavlsveedlealieamaePei 93 
                  r+++fG Gnf Ra+ +++ dLl+e ++l +g+  v+++++ ++++L++qd+ly+++++g     e+++ear+++svn+ ++  +d +  ++++ +Pei
   CTQ26279.1  17 RAIQFGEGNFLRAFIDWQLDLLNEkTDLATGVTIVRPINTVFPPSLNTQDGLYTTVIRGlnergEAVSEARIIRSVNNEINPWQDFAGYLALARDPEI 114
                  79******************************************************996688999************999999999************ PP

                  -EEEE---TTTBE.TTTEB-TTSHHHHHHHH-TTHHHHHHHHHHHTT----EEEE-SS CS
  Mannitol_dh  94 rivsltvtekGid.atgeletdlpaiaadlakpellvealkrrraaglkpltiisCdn 150
                  ++v++++te+Gi+ ++g+  +d p ++ +++ ++ll+e++++++ a +k++tii+C+ 
   CTQ26279.1 115 AFVFSNTTEAGISyHAGDRPDDMPPVSFPAKLTQLLLERFRHFNGAADKGWTIIPCEL 172
                  ********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3936.17
//
Query:       CTQ26280.1  [L=921]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-48  164.1   0.0    7.3e-48  162.5   0.0    1.9  1  Sigma54_activat  Sigma-54 interaction domain
    4.3e-09   36.6   0.0    2.2e-08   34.3   0.0    2.1  1  Sigma54_activ_2  Sigma-54 interaction domain
    3.2e-08   33.7   0.2    6.3e-05   23.2   0.0    2.7  2  PRD              PRD domain
      7e-07   29.6   0.1    3.1e-05   24.3   0.0    3.5  3  AAA_22           AAA domain
    2.7e-06   27.6   0.2    5.6e-06   26.6   0.2    1.5  1  EIIA-man         PTS system fructose IIA component
    5.6e-06   26.4   0.0    1.4e-05   25.1   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0002   21.8   0.0     0.0046   17.4   0.0    2.9  1  AAA_16           AAA ATPase domain
    0.00025   21.5   0.0     0.0006   20.2   0.0    1.7  1  AAA              ATPase family associated with various cellul
    0.00098   18.6   0.1      0.022   14.2   0.1    2.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.038   13.7   0.0    1.6  1  AAA_30           AAA domain
      0.034   14.4   0.0       0.11   12.8   0.0    1.8  1  UPF0122          Putative helix-turn-helix protein, YlxM / p1
      0.036   13.2   0.0       0.11   11.6   0.0    1.8  1  MCM              MCM P-loop domain
      0.059   13.1   0.0       0.18   11.5   0.0    1.8  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.094   11.9   0.0        3.3    6.8   0.0    2.2  2  TIP49            TIP49 P-loop domain
       0.12   12.3   0.2        0.9    9.5   0.0    2.5  3  MarR_2           MarR family
       0.18   11.6   0.0        0.6    9.9   0.0    1.9  2  AAA_29           P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.5   0.0   6.5e-51   7.3e-48       2     156 ..     107     272 ..     106     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: 162.5 bits;  conditional E-value: 6.5e-51
                      ---SHHHHHHHHHHHHHCTSS...S-EEEECSTTSSHHHHHHHHHH.....HSTTTTS-EEEEETTTS..-TTCHHHHHHEBSSSSSTTTSS-B CS
  Sigma54_activat   2 igesealkelleqikkvaktd...lsvlitGesGtGKellaraihe.....askrkekpfvavncaai..peelleseLFGhekGaFtGAekek 85 
                      +g++ +l++ +eq+k++  ++   l++litG+sGtGK+++a+++he          ++pfv++nca++  ++ell+++LFG++kGaFtGA+ +k
       CTQ26280.1 107 TGHDGSLRKPIEQMKTALFYPnggLPLLITGDSGTGKSYMAELMHEfaiaqGLLAPDAPFVSFNCAQYasNPELLAANLFGYVKGAFTGAQGDK 200
                      688999***********9888888**********************665543345699********6655999********************* PP

                      EHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSE.EE--EEEEEEESS-HHHHHHTTSS-H CS
  Sigma54_activat  86 kGlfekadgGtlfLDeigelplelQekLlrvlqegevervGsske.ikvdvriiaatnedleeaveegkfre 156
                      +G+fe+a+gG+lfLDe+++l++++QekL+++l+++e++rvG++++  ++++r+++at+ed+++++ ++ +r+
       CTQ26280.1 201 AGAFEAANGGMLFLDEVHRLDAQGQEKLFTWLDRKEIYRVGETAQgLPISLRLVFATTEDIHSTFLTTFLRR 272
                      *****************************************986549********************99986 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0     2e-11   2.2e-08      21     113 ..     130     263 ..     113     267 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 2e-11
                      SS-EEEEEETT--HHHHHHCC--TTS-E.....E--SSTTHHHH-H.........................HHHHHHTTTSEEEEEE-TT--HH CS
  Sigma54_activ_2  21 klpvfltGekGsgkelvArlLhknsgpw.....leifvverlaklp.........................ldlleqakggtLylkdiadlska 84 
                       lp+++tG+ G+gk+++A+l+h+++  +     +++fv  ++a+                           +  +e a+gg+L+l +++ l+++
       CTQ26280.1 130 GLPLLITGDSGTGKSYMAELMHEFAIAQgllapDAPFVSFNCAQYAsnpellaanlfgyvkgaftgaqgdkAGAFEAANGGMLFLDEVHRLDAQ 223
                      58*********************98654222226677777777533345999999*************999999******************** PP

                      HHHHHHHHHHH...........HTTTT-EEEEEEEE-TTT CS
  Sigma54_activ_2  85 eqkeLlellak...........aeksslrlVstsskdleq 113
                       q +L  +l++           + + slrlV+++ +d+++
       CTQ26280.1 224 GQEKLFTWLDRkeiyrvgetaqGLPISLRLVFATTEDIHS 263
                      ***********99999999875338899999999988865 PP

>> PRD  PRD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.4    0.0042       4.7       7      89 ..     468     551 ..     462     552 .. 0.80
   2 !   23.2   0.0   5.7e-08   6.3e-05       2      87 ..     827     908 ..     826     911 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0042
                 HHHHHTS-BTTCHHHHHHHHHHHHHHHHHHTT.....--HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTST--HHHHHHHHHHHHH CS
         PRD   7 iekklqikleddslyerLitHlkfaieRlkeg.....itienplleeikekypkefeiakeileeleeeldielpedEiaylalhfls 89 
                 +ek+++i++ + + +++L+   +++i+R ++      ++   +l + + +k+p ++   + il  l  +ldie    +++ l+l f++
  CTQ26280.1 468 LEKRFNIQF-NGNCLYALS---HYLIHRSRQPqstinNEKARQLEDFLVQKFPLLYRFCEAILGALTLKLDIEPQRIDLLLLVLWFHK 551
                 689999999.999988887...5678888887734433333345566789****************************9999999986 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 5.7e-08
                 HHHHHHHHHHTS-BTTCHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTST--HHHHHHHHHHH CS
         PRD   2 eiiekiekklqikleddslyerLitHlkfaieRlkegitienplleeikekypkefeiakeileeleeeldielpedEiaylalhf 87 
                 +++  +e+  + ++  ++ + +L++H++++ieRl ++         +  +   +e ++ +e+++ +e  + +++p  E++y+  ++
  CTQ26280.1 827 QFLLRYEHLAGRDV-PNDRKVALYVHISCLIERLIRHASPAQYTGGQCPD---RELATLREAFSVIESGYSVKIPVVELCYIHDIL 908
                 67788899999999.9999******************8888888888887...9****************************8766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.7e-08   3.1e-05       7     119 ..     132     247 ..     128     265 .. 0.72
   2 ?   -0.1   0.0      0.91     1e+03      96     134 ..     422     462 ..     397     464 .. 0.77
   3 ?   -2.0   0.0       3.7   4.1e+03      52      97 ..     572     623 ..     542     643 .. 0.56

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.7e-08
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee....erpevvfvtlpsst.sskdllrellralglelkaerlsseellealeqalraravielliiDEa 100
                  l++tG sGtGK++ ++ ++e +      ++    +++++v++++++   +++ l+ +l+  ++ ++ +            + a++a+   ++l +DE+
  CTQ26280.1 132 PLLITGDSGTGKSYMAELMHEFAI-----AQgllaPDAPFVSFNCAQYAsNPELLAANLFGYVK-GAFT------GAQGDKAGAFEAANG-GMLFLDEV 217
                 589******************983.....2335668*************666666777777666.3444......344566667777777.889***** PP

      AAA_22 101 qhlr...seealeeL..rsllnl......s 119
                 ++l+   +e+++++L  ++++ +       
  CTQ26280.1 218 HRLDaqgQEKLFTWLdrKEIYRVgetaqgL 247
                 ***986559999999776776666644333 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.91
      AAA_22  96 iiDEaqh.lrseealeeL..rsllnl.srkgvqliLvGtpelr 134
                 + +Eaq+ +   e +e+L  r ++++ ++++ q++L + +++r
  CTQ26280.1 422 VWEEAQRsM--GEEIETLfdRLIFDNhDSSSPQMLLLIAHQVR 462
                 557999966..77888885666666688888899888887776 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.7
      AAA_22  52 sskdllrellralglelka.....erlsseellealeqalrarav.iellii 97 
                 + +++++   r l+++l +        + e++ +++  +++++a   +l+i+
  CTQ26280.1 572 TASSIANVANRLLKSQLFEsfdmpLDVTPEAIANQVMAYIESHALaSGLIIL 623
                 4445555445555544444444432225555556666666666665444444 PP

>> EIIA-man  PTS system fructose IIA component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.2     5e-09   5.6e-06       3      90 ..     564     649 ..     562     658 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 5e-09
                 EEEESB.CHHHHHHHHHHCCHSSS-SCEEEEEC-TTS-CCCHHHHHHHHHCTS--TTEEEEEESSCCCHHHHHHHHCCTTSTTEEEEEC CS
    EIIA-man   3 vivsHg.elAeglaelleelagedqekviavggtpdesigtlaekikeaieevdsedevlvLvDlggatpfneaaleleekeelevitg 90 
                 +i  Hg + A+++a+++++l+++ q  ++  +++ d +++ +a+++++ ie+   + + ++LvD+g+        +  ++++++ +i  
  CTQ26280.1 564 IILAHGyATASSIANVANRLLKS-Q-LFESFDMPLDVTPEAIANQVMAYIESHALASGLIILVDMGSLNAIHRHFNRRLSTPMA-IINN 649
                 8999*******************.5.9***********************99999************98888877777777663.5554 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.3e-08   1.4e-05       2     102 ..     133     243 ..     132     272 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.3e-08
                 EEEE--SSSSHHHHHHHGGGGB........S--EEEEE--TT--HHHHH--B--.........--------..........G-SEEEEESGGG--HHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaal........nreveyvqltrdtteedlkgrreikngttslvdsplvraar..........egeilvlDEveraesevl 82 
                 +l+ G++GtgKs +ae + ++          ++++  ++ ++ +  +l+    +      +v+++++  a+          +g +l+lDEv+r++ + +
  CTQ26280.1 133 LLITGDSGTGKSYMAELMHEFAiaqgllapDAPFVSFNCAQYASNPELLAANLF-----GYVKGAFT-GAQgdkagafeaaNGGMLFLDEVHRLDAQGQ 225
                 899***************9988899999**9*****************999997.....45555555.2223555557799****************** PP

                 HHHHHHHHSSEEE..-SSSE CS
       AAA_5  83 nsLlslleerrllleeggel 102
                 ++L + l++++++    ge 
  CTQ26280.1 226 EKLFTWLDRKEIY--RVGET 243
                 **********998..44444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.1e-06    0.0046      20      69 ..     128     180 ..     113     247 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.1e-06
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekd.....ggiflrgkcdqlesaipy 69 
                 + g    +l++G+sG+GKs +++  ++ + ++     ++ f++ +c q+ s+ ++
  CTQ26280.1 128 NGG--LPLLITGDSGTGKSYMAELMHEFAIAQgllapDAPFVSFNCAQYASNPEL 180
                 333..779******************98888867776677799999999666443 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.4e-07    0.0006       1     100 [.     133     249 ..     133     280 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.4e-07
                 EEEESSTTSSHHHHHHHHHHHH........THEEEEEETTTCSSS..........STTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel........gvefleisgsellsk..........yvgesekkirelfkeakeka.......kpsilfiDEidalaksr 74 
                 +l++G  GtGK+++a+ + + +        +++f+++++++  s+          y       +++ f+ a+  +       +   lf+DE+++l  + 
  CTQ26280.1 133 LLITGDSGTGKSYMAELMHEFAiaqgllapDAPFVSFNCAQYASNpellaanlfgY-------VKGAFTGAQGDKagafeaaNGGMLFLDEVHRLDAQG 224
                 5899***********987777555555666699**********7779966665552.......34444333222233344434599*********8888 PP

                 TTCCCHHHHHHHHHHHHHHHHTTTS..........S CS
         AAA  75 sgseseeeervvnqLlteldgvkkk..........e 100
                            +++L+t ld+ + +           
  CTQ26280.1 225 -----------QEKLFTWLDRKEIYrvgetaqglpI 249
                 ...........9999999999998777777777653 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.9e-05     0.022      21     136 ..     129     238 ..     115     259 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.9e-05
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkeeekllkrrpfraph.hsaskaalvGggskpkpGeislahnGvLfLDElp 116
                   Gg  ll++G +G+GK+ +a+ +++       ++ l +     v+   + +++ +++++ a       k a+ G  +  k G+   a+ G+LfLDE+ 
    CTQ26280.1 129 GGLPLLITGDSGTGKSYMAELMHEFAI----AQGLLAPDAPFVSF--NCAQYASNPELLAANlFGYVKGAFTG-AQGDKAGAFEAANGGMLFLDEVH 218
                   667789999999999999887776532....22222222222222..12223333333333303344455555.566789***************** PP

  Mg_chelatase 117 efkrkvlevLRePledgevt 136
                    ++++  e L + l+++e+ 
    CTQ26280.1 219 RLDAQGQEKLFTWLDRKEIY 238
                   **********9999999874 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.4e-05     0.038      21     157 ..     133     272 ..     119     304 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.4e-05
      AAA_30  21 avltGpAGtGKttalkalreaweaag.......grviglAptgkaAkvLaeelgieastiakllkrlk............grarlepgtllivDEagmv 100
                  ++tG  GtGK+++ + + e + a+g       +  + +A  +   + La++           l  +             g+ + ++g +l  DE+  +
  CTQ26280.1 133 LLITGDSGTGKSYMAELMHEFAIAQGllapdapFVSFNCAQYASNPELLAAN-----------LFGYVkgaftgaqgdkaGAFEAANGGMLFLDEVHRL 220
                 589***********************44444332222333333333333322...........2111134445555577766788899*********** PP

      AAA_30 101 dtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlveaagigtaeLtevvRq 157
                 d++  ++l++ +++   ++  vG ++Q  +++   v+++    ++i+++ Lt+  R 
  CTQ26280.1 221 DAQGQEKLFTWLDR--KEIYRVGETAQGLPISLRLVFATT---EDIHSTFLTTFLRR 272
                 ************88..899************999999988...67888888888775 PP

>> UPF0122  Putative helix-turn-helix protein, YlxM / p13 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.5e-05      0.11      10      66 ..     780     834 ..     777     847 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.5e-05
     UPF0122  10 LfdiYqsLLTekqanylelyyadDlSlsEiAeefnvsrqavydnikrtekllekyEe 66 
                 L+ i+++L T  q++ ++  +++ +Sl  + e   +  +a    i+++e++l++yE+
  CTQ26280.1 780 LMRIFGELATAEQVSEINNLILKNFSLRRVIESVTILDTA--KVINQVEQFLLRYEH 834
                 7899******************************999988..79***********96 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.7e-05      0.11      59     150 ..     132     237 ..     115     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.7e-05
                 EEEEEESSTSTHHHHHHHHHHH..........SSSEEEEESSSSSSSHSSSEE....EEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHH CS
         MCM  59 nvllvgdpgtaKsqlLkyvekl..........apravytsgkgssaagLtaav....vrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhE 143
                  +l+ gd+gt+Ks + + ++++          ap   + +++ +s+ +L aa     v+   tg    +aGa   a++G++ +De+ + + + +++l+ 
  CTQ26280.1 132 PLLITGDSGTGKSYMAELMHEFaiaqgllapdAPFVSFNCAQYASNPELLAANlfgyVKGAFTGAQGDKAGAFEAANGGMLFLDEVHRLDAQGQEKLFT 230
                 57999********98877776522222232223555666788899999988761222566666667789*************************99998 PP

                 HHHHSEE CS
         MCM 144 amEqqti 150
                  +++++i
  CTQ26280.1 231 WLDRKEI 237
                 8777665 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.8   7.7e+03      37      53 ..     134     150 ..     133     154 .. 0.86
   2 ?   11.5   0.0   0.00016      0.18      83     130 ..     207     251 ..     190     273 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.8
      RuvB_N  37 llyGpPGlGkttlakii 53 
                 l++G  G Gk+ +a+++
  CTQ26280.1 134 LITGDSGTGKSYMAELM 150
                 899**********9986 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00016
      RuvB_N  83 eekdvlfideihrlsraveevlysamedfrldivigkGpsarsikldl 130
                  ++ +lf+de+hrl+ + +e l++ ++  ++      G++a+ + ++l
  CTQ26280.1 207 ANGGMLFLDEVHRLDAQGQEKLFTWLDRKEIY---RVGETAQGLPISL 251
                 56789******************998876653...3355555555554 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0029       3.3      50      88 ..     130     174 ..     127     182 .. 0.83
   2 ?    2.6   0.0     0.058        65     280     300 ..     210     234 ..     202     237 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0029
                 XXXXXXXXXXXXXXXXXX.....XXXXXXXX.XXXXXXXXXXXXX CS
       TIP49  50 GravLlaGpsgtGktala.....iaiskelg.edvpfvalsgsev 88 
                 G  +L++G+sgtGk+ +a      ai++ l   d pfv+++ ++ 
  CTQ26280.1 130 GLPLLITGDSGTGKSYMAelmheFAIAQGLLaPDAPFVSFNCAQY 174
                 6679***********9997766679**987549*******99875 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.058
                 XXXXXXXXXXXXXX....XXXXXXX CS
       TIP49 280 GvlfiDevhmlDie....cfsylnr 300
                 G+lf+Devh lD       f++l+r
  CTQ26280.1 210 GMLFLDEVHRLDAQgqekLFTWLDR 234
                 99**********8422236787776 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0008       0.9      21      50 ..      25      54 ..       3      61 .. 0.79
   2 ?   -1.9   0.0       2.9   3.2e+03      25      35 ..     303     313 ..     299     317 .. 0.86
   3 ?   -3.2   0.0         7   7.9e+03      33      42 ..     555     564 ..     534     573 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0008
                EEEHHHHHHHHTSSHHHHHHHHHHHHHTTS CS
      MarR_2 21 dltvgelarrlglsksavsrilkrLvaaGL 50
                 +t++ larr+ + + ++s  l+ Lva+  
  CTQ26280.1 25 VFTASWLARRFAMQRNTASHYLNQLVAQDV 54
                47*************************975 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.9
                 HHHHHHHTSSH CS
      MarR_2  25 gelarrlglsk 35 
                 + la+rl+l++
  CTQ26280.1 303 RTLAARLQLTP 313
                 679******97 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 7
                 SSHHHHHHHH CS
      MarR_2  33 lsksavsril 42 
                 +s++ v+r++
  CTQ26280.1 555 ISQQQVTRAI 564
                 5666666654 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.5   5.1e+03      23      33 ..     101     112 ..      95     112 .. 0.78
   2 ?    9.9   0.0   0.00053       0.6      22      37 ..     128     145 ..     117     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.5
      AAA_29  23 g.atlltGpsGs 33 
                 + + lltG+ Gs
  CTQ26280.1 101 DhFSLLTGHDGS 112
                 3478*****998 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00053
      AAA_29  22 kg..atlltGpsGsGKST 37 
                 +g    l+tG+sG+GKS 
  CTQ26280.1 128 NGglPLLITGDSGTGKSY 145
                 554678***********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 6295.18
//
Query:       CTQ26281.1  [L=140]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-15   56.2   0.0    4.7e-15   55.8   0.0    1.2  1  EIIA-man  PTS system fructose IIA component
  ------ inclusion threshold ------
       0.16   11.6   0.0       0.32   10.6   0.0    1.5  1  RecR      RecR protein


Domain annotation for each model (and alignments):
>> EIIA-man  PTS system fructose IIA component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   5.2e-19   4.7e-15       3     114 ..       6     114 ..       4     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 5.2e-19
                 EEEESBCHHHHHHHHHHCCHSSS-SCEEEEEC-TTS-CCCHHHHHHHHHCTS--TTEEEEEESSCCCHHHHHHHHCCTTSTTEEEEEC--CHHHHHHHH CS
    EIIA-man   3 vivsHgelAeglaelleelagedqekviavggtpdesigtlaekikeaieevdsedevlvLvDlggatpfneaaleleekeelevitgvnlPlveeava 101
                 + +sHg +A+gl++++e ++g+ q ++ +++   +e+++ l +++++ +++++++de +v +D++ ++ +ne ++ l++  +   ++g+nlPl++ +++
  CTQ26281.1   6 IFASHGSFANGLLNSVELILGK-QPDIHTLCAYVEEEAD-LTQQVEALMARFPAQDELIVITDIFAGSVNNEFVRFLSRP-HFHLLSGLNLPLIIDLLI 101
                 679*******************.7899999999888875.666777777***********************99987766.889*************** PP

                 HHCHHHCCHHHHH CS
    EIIA-man 102 arasaslgelvek 114
                  +a+ ++++l+ +
  CTQ26281.1 102 SAAEDDTEKLITE 114
                 ****999999876 PP

>> RecR  RecR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.5e-05      0.32       6      20 ..     113     127 ..     110     128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.5e-05
                 HHHHHHHHHH-EE-T CS
        RecR   6 aeaLqeakekvrhCs 20 
                  eaL++ake++++C 
  CTQ26281.1 113 TEALTNAKESIQYCN 127
                 58************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1078.16
//
Query:       CTQ26282.1  [L=157]
Description: putative PTS permease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-48  163.3   0.3    4.9e-48  163.1   0.3    1.0  1  PTSIIB_sorb  PTS system sorbose subfamily IIB component


Domain annotation for each model (and alignments):
>> PTSIIB_sorb  PTS system sorbose subfamily IIB component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.1   0.3   2.7e-52   4.9e-48       1     148 []       3     150 ..       3     150 .. 0.99

  Alignments for each domain:
  == domain 1  score: 163.1 bits;  conditional E-value: 2.7e-52
                  EEEEEEETTGCGTTHHHHHHCCCTTSEEEEE-HHHHC-HHHHHHHHCCS-TTSEEEEE-HHHHHHHHHCB-.TTEEEEEEESSHHHHHHHHHTT---S CS
  PTSIIB_sorb   1 iklvRiDdRLiHGqVataWtkelkanriivvdDevakdelqkellkmaapsgvkvsilsvekaievlkkakvekekvlllvknpedalklveggvkik 98 
                  i+l+R+D+RL+HGqVa++Wt++++a++i++++D+v  del+k+++k+a+p++vk+ i+++++ ie++k++ ++k++++++v++++da++++ +  +ik
   CTQ26282.1   3 ITLLRVDHRLLHGQVAFSWTQYVGADCILIANDSVPGDELRKTTIKLAKPPSVKLVIKNINDSIEAIKSGVTDKYNLFIVVESVNDAWRIASAIDEIK 100
                  89************************************************************************************************ PP

                  EEEEEEB---TTSEESSSSBEE-HHHHHHHHHHHHC--EEEE-SSTTS-G CS
  PTSIIB_sorb  99 evnvGnmakkegkkqvsksvslteeeiealkelaekgveveiqkvpsdkk 148
                  ++n+G++++keg+k++sk+++l ++eie+l++l  kgvevei++vp+d+k
   CTQ26282.1 101 SINLGGIKAKEGSKNISKAINLLPTEIEQLQQLVGKGVEVEIRQVPNDRK 150
                  ***********************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1200.89
//
Query:       CTQ26283.1  [L=259]
Description: putative PTS permease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-71  239.1  27.2    4.5e-71  239.0  27.2    1.0  1  EII-Sor   PTS system sorbose-specific iic component
  ------ inclusion threshold ------
        2.4    8.1   6.0        6.4    6.7   0.4    3.2  2  PetG      Cytochrome B6-F complex subunit 5


Domain annotation for each model (and alignments):
>> EII-Sor  PTS system sorbose-specific iic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.0  27.2     5e-75   4.5e-71       1     233 []       1     233 [.       1     233 [. 0.97

  Alignments for each domain:
  == domain 1  score: 239.0 bits;  conditional E-value: 5e-75
     EII-Sor   1 liqailiglvaflagldsllgeltlerPlvagllvGlilGdlqtGlivGatlqlvylGvvtiGgavppdaalagiigtalailsgasaeaavalavpva 99 
                 +++a+l+glvaf+a+ ++ lg++ ++rP+v+gll+Gl+lGd+qtG+i+Gatl+l+++G +++G+++ppd++++gi+g+a+ai+sga++e+a+ l++p+a
  CTQ26283.1   1 MVEALLLGLVAFIAQSEYALGTSLISRPIVTGLLTGLVLGDVQTGVIMGATLELAFIGSFSVGASIPPDVVTGGILGVAFAITSGAGTETALLLGLPIA 99 
                 579************9*********************************************************************************** PP

     EII-Sor 100 llgqllttlvr.tinsvfvhkadkaaekgnlkkierlhlllplllglllrfipvflalyfgaeavqallnaipewllkgLsvaGglLpavGfAmllkvm 197
                 +l+++l++++  ++  ++ +kad +ae+++l++ier+hl++++ l l+  + +v++ +++g++av++ll++ipe++ +gLsva g++pa+GfAml +++
  CTQ26283.1 100 TLTLILKNIYLgMFIPMLSQKADGYAERADLRGIERMHLIAGFGLSLM-LAAVVTVSFLVGSNAVKSLLDTIPEFIKHGLSVATGIIPALGFAMLARLL 197
                 **********98888999***********************7777766.67778888****************************************** PP

     EII-Sor 198 lkkkllpffllGFvlaaylklnliavaiigvaiAli 233
                 ++kk++p+f+lGFvl+aylk++++++ai+g+++A++
  CTQ26283.1 198 INKKVAPYFFLGFVLMAYLKIPVTGIAILGAIVAVV 233
                 **********************************85 PP

>> PetG  Cytochrome B6-F complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.4   0.00071       6.4       1      10 [.       1      10 [.       1      11 [. 0.96
   2 ?    2.4   0.9     0.016   1.5e+02       4      12 ..      32      40 ..      29      47 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00071
        PetG  1 MvEpLLlGiV 10
                MvE+LLlG+V
  CTQ26283.1  1 MVEALLLGLV 10
                *********9 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.016
        PetG  4 pLLlGiVLG 12
                 LL G+VLG
  CTQ26283.1 32 GLLTGLVLG 40
                69******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2084.57
//
Query:       CTQ26284.1  [L=283]
Description: PTS system, mannose/fructose/sorbose family, IID component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-102  342.8   4.1   1.2e-102  342.6   4.1    1.0  1  EIID-AGA  PTS system mannose/fructose/sorbose family IID comp


Domain annotation for each model (and alignments):
>> EIID-AGA  PTS system mannose/fructose/sorbose family IID component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.6   4.1    7e-107  1.2e-102       2     265 .]      21     283 .]      20     283 .] 0.99

  Alignments for each domain:
  == domain 1  score: 342.6 bits;  conditional E-value: 7e-107
    EIID-AGA   2 ltkkdlnkvflrslflqasfnyermqalgflysmlpalkklYkkdkedlkealkrhleffNtepqlatfilGitlalEeekang.eideeainavKvgl 99 
                 +t +dl++vf+rs+ +++s+nyer+++l+f+y+++p+lkklY+   e+l++alkrhl ffNt+p+++t++lGit+a+Ee+++++ ++d++ai +vK++l
  CTQ26284.1  21 ITPRDLRRVFWRSFQMEFSWNYERQMNLAFVYALIPVLKKLYP-RREELAAALKRHLVFFNTTPHIVTLLLGITTAMEEKNSQQkNMDATAIDNVKASL 118
                 7899**************************************5.9*************************************9955************* PP

    EIID-AGA 100 mGPlAGiGDslfwgtlrpilaaiaaslAlqgnilGpilflvvfnvvrlalryyllelGYklGtkaieklsesgllqkltkaasilGlfvvGaliaswvk 198
                 mGPlAG+GDs+fwgtlr i+++i++slAl+gnilGpilfl+vfnv+++++r+ ++++GY lGt +++++++sg++++lt +asi+Gl+vvGa++as++ 
  CTQ26284.1 119 MGPLAGLGDSFFWGTLRLIATGIGTSLALKGNILGPILFLLVFNVPHILVRWCFTRWGYVLGTGVLQRIQKSGMMESLTYGASIIGLMVVGAMTASMID 217
                 *************************************************************************************************** PP

    EIID-AGA 199 istplkissgettvslqdildkilpgllpllltllvywllkkkkvspikiilllvvigivgsllgil 265
                 i++pl++ +ge ++++qdi++ ilp++lpl+   +vywll +k v+p+ ii ++ ++gi+gs++g++
  CTQ26284.1 218 ITIPLSFGAGEAKTQVQDIINDILPCMLPLVSFGIVYWLLGRK-VKPLSIIGGMALVGILGSWIGLF 283
                 *******************************************.*********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2302.60
//
Query:       CTQ26285.1  [L=353]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-18   64.5   0.0    6.3e-13   48.7   0.0    2.3  2  SIS       SIS domain
    0.00028   20.9   0.0     0.0012   18.8   0.0    2.0  2  SIS_2     SIS domain
     0.0025   17.8   0.0     0.0049   16.9   0.0    1.4  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
  ------ inclusion threshold ------
      0.075   13.3   0.2       0.15   12.3   0.1    1.6  2  PK_C      Pyruvate kinase, alpha/beta domain


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.4e-16   6.3e-13       5     127 ..      39     163 ..      37     167 .. 0.89
   2 !   13.7   0.0   9.2e-06     0.041       2      65 ..     209     272 ..     208     330 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.4e-16
                 SSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-ST.TCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEE CS
         SIS   5 akriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalide.ddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlal 102
                  +ri++l++G+s ++a+ +++ +e+  g++ ++ + + + h   + id+ +dlv++is+sg ++++++a +++++ g  + a+T+ + sp+   +d +l
  CTQ26285.1  39 VRRILLLATGSSLNAALCARYFFEQRFGVLLDIKEPYNFTHY--DAIDPhADLVVAISQSGKSASTLEAMRKVQASGKSVFALTSDPQSPIGGASDGVL 135
                 58************************************9998..7777648************************************************ PP

                 EEEEECHC...SSSHCHHHHHHHHHHHH CS
         SIS 103 yinaepet...lvastksltaqlaalda 127
                 +in++ e+       ++++++ l+++ +
  CTQ26285.1 136 DINTGIESvgfVTRGFSATVLNLLLIAL 163
                 ********76666666666666666655 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 9.2e-06
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSH CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsge 65 
                 L++ +r + +G G+   +ake+  k+ e+  +++++ + ++++hg+   ++ ++++++i  ++ 
  CTQ26285.1 209 LRSGERFVATGYGALVGVAKEFETKFTETVRVPSSGFELEAYMHGPYLEANARHVMLFIEDTPD 272
                 5666788899*************************************************85554 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.8e-07    0.0012     104     138 .]      87     121 ..      40     121 .. 0.95
   2 ?   -0.9   0.0      0.33   1.5e+03       1      54 [.     179     231 ..     179     253 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.8e-07
                 T-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2 104 gDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                  D+ + iS+sG++a+ +ea++++++ g  v Alts
  CTQ26285.1  87 ADLVVAISQSGKSASTLEAMRKVQASGKSVFALTS 121
                 699*******************************8 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTS CS
       SIS_2   1 qYlaevteilerivetqaeaiekaaeliadslenggkvlvfGsGhSaalaeela 54 
                 +Ylae+++++++i  +      + ++   ++l++g+++++ G G     a+e+ 
  CTQ26285.1 179 HYLAELQRLVAAI-PEVIVRTSRFIDRHSETLRSGERFVATGYGALVGVAKEFE 231
                 5888888888888.7777777777788889999999999999887666666665 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-06    0.0049       8     120 ..      94     203 ..      92     210 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
                 TTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHHCCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHHHHHHHHHCTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   8 GGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiepdlkrllellealgkkkalllkiagvvlnrvdgeneetllkealeelkqrygv 106
                 + +GK+  ++  +r  +  g+ V+++  Dpq++    +   + di++++++++ + + ++ ++ +ll+ia +++ + ++   ++ +++++  ++qr+  
  CTQ26285.1  94 SQSGKSASTLEAMRKVQASGKSVFALTSDPQSPIGG-ASDGVLDINTGIESVGFVTRGFSATVLNLLLIALIIARKQEKA--SEVEEQHYLAELQRLVA 189
                 568****************************99877.6667778999*************99655566666666665555..66666666666667766 PP

                 -EEEEEE--CCHCC CS
                 xxxxxxxxxxxxxx RF
        CbiA 107 pvlgviprdeavae 120
                  +  vi r++++++
  CTQ26285.1 190 AIPEVIVRTSRFID 203
                 66667777777765 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.2   9.8e+03      29      58 ..      17      47 ..      17      50 .. 0.76
   2 ?   12.3   0.1   3.3e-05      0.15      13      51 ..      84     153 ..      77     240 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.2
                HHHHHHT-TS.SEEEEEESHHHHHHHHHHCT CS
        PK_C 29 Arliskyrpk.vpiiavtpneltarqlalyr 58
                A+ + +yr+k +pi  + +++ + r l l  
  CTQ26285.1 17 AQILREYRQKlAPIETFARQHPVRRILLLAT 47
                6778899999889988888888777776655 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.3e-05
                 HHT-SEEEEE-SSSHHHHHHHHT-TS....SEEEEEESHHHH...........................H CS
        PK_C  13 elgakaIvvltesGetArliskyrpk....vpiiavtpnelt...........................a 51 
                 + +a+++v++++sG++A  +  +r+       ++a+t++++                            a
  CTQ26285.1  84 DPHADLVVAISQSGKSASTLEAMRKVqasgKSVFALTSDPQSpiggasdgvldintgiesvgfvtrgfsA 153
                 55899*******************99988899*****999887777766666666666666666444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2842.59
//
Query:       CTQ26286.1  [L=336]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-14   53.7   0.0    3.8e-11   43.0   0.0    2.3  2  SIS       SIS domain
    6.1e-05   22.7   0.1    9.7e-05   22.0   0.1    1.3  1  MR_MLE_C  Enolase C-terminal domain-like
    0.00026   21.0   0.3      0.001   19.1   0.1    2.1  3  SIS_2     SIS domain
  ------ inclusion threshold ------
       0.04   13.9   0.0      0.072   13.1   0.0    1.3  1  MinC_N    Septum formation inhibitor MinC, N-terminal domain
      0.041   13.5   0.0      0.091   12.4   0.0    1.5  1  DUF2529   Domain of unknown function (DUF2529)


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.1e-14   3.8e-11      28     102 ..      58     132 ..      44     148 .. 0.93
   2 !    8.4   0.0   0.00052       1.9      26      79 ..     221     274 ..     216     286 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.1e-14
                 HHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEE CS
         SIS  28 eeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlal 102
                 +e++ ++v  e+a+el h+    +++d +v+ +s sg tk++va ae +k++g +++aIT +++spla+ a+ ++
  CTQ26286.1  58 KELTSVPVYLEQAAELIHRGHKKLNKDAVVVTLSKSGDTKESVAIAEWCKAQGIRVVAITRHADSPLAAAASWHI 132
                 79999****************************************************************996555 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00052
                 HHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHT CS
         SIS  26 kleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelaker 79 
                  lee++ +    ++++e+ hg+l l++++ +++l+   g+ + l++ +e  +e+
  CTQ26286.1 221 ILEEMQWKRTKSVSSAEFFHGTLELLEKEVPLFLVKGEGRCRALDERVERFAEK 274
                 5677777777888999***************************99999955544 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   2.7e-08   9.7e-05     123     190 ..      84     153 ..      53     168 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.7e-08
                 SEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBS.CS.SHHHHHHHHHHHHTTTTBEEEEEEGGGGHTSG CS
    MR_MLE_C 123 divqpdvsrvgGitearkvaalaeafgvpvapHs.gs.gglglaaslhlaaaipnllileyfldaellee 190
                 d+v + +s++g   e++++a+ ++a g++v+  +    ++l+ aas h+ ++++n   +ey+l  +l+ +
  CTQ26286.1  84 DAVVVTLSKSGDTKESVAIAEWCKAQGIRVVAITrHAdSPLAAAASWHIPMCHKNGVEYEYMLLYWLFFR 153
                 889999***********************9998854448***********************99987333 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.47   1.7e+03      25      62 ..      23      62 ..       9      79 .. 0.57
   2 !   19.1   0.1   2.8e-07     0.001      93     137 ..      72     117 ..      47     118 .. 0.79
   3 ?   -3.0   0.0       1.9   6.9e+03      85      98 ..     265     278 ..     254     286 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.47
                HHHHHHHHHTT-.-EEEEES.GGGHHHHHHTSSSTT-BTT CS
       SIS_2 25 aeliadslengg.kvlvfGs.GhSaalaeelaaragglae 62
                ae++ad + ++g   l f s G+S a+ + +   a  l  
  CTQ26286.1 23 AETVADDIYDNGcSALFFASvGGSLAPMMAINEFAKELTS 62
                5555555543331444444447777777666555555544 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 2.8e-07
                 HHHHHH.TT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE CS
       SIS_2  93 kqilrl.vrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlt 137
                 + i r   +l++  v + +S+sG  +  v++ae +k++g++v+A+t
  CTQ26286.1  72 ELIHRGhKKLNKDAVVVTLSKSGDTKESVAIAEWCKAQGIRVVAIT 117
                 4444442456777788889**************************8 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.9
                 HTT-TTHHHHHHHH CS
       SIS_2  85 lerdegyakqilrl 98 
                  er+e +a++i ++
  CTQ26286.1 265 DERVERFAEKITDH 278
                 57888888888766 PP

>> MinC_N  Septum formation inhibitor MinC, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     2e-05     0.072      36      83 ..      74     121 ..      53     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2e-05
      MinC_N  36 iaeaPklfknapvvldvskleekvdlkaLkelisraglrivgvsgckd 83 
                 i++  k +++ +vv+ +sk  ++ +  a+ e ++++g+r+v+++   d
  CTQ26286.1  74 IHRGHKKLNKDAVVVTLSKSGDTKESVAIAEWCKAQGIRVVAITRHAD 121
                 66666677889********************************77666 PP

>> DUF2529  Domain of unknown function (DUF2529)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.6e-05     0.091      65     135 ..      69     139 ..      47     143 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.6e-05
                 TEEE--TT-..---TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEESS---T..TGGGSSS-EE----S- CS
     DUF2529  65 svkkleeek..eltetDrvllfsresndkealklakkleekgievvavsskvkeedalteladvfidlklkkg 135
                 ++++l +    +l++   v+ +s++ ++ke +++a+ ++++gi vva++ + ++   l+  a  +i ++ k+g
  CTQ26286.1  69 QAAELIHRGhkKLNKDAVVVTLSKSGDTKESVAIAEWCKAQGIRVVAITRHADSP--LAAAASWHIPMCHKNG 139
                 55555444343566555566778888999*******************9887765..7888888887777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2485.61
//
Query:       CTQ26287.1  [L=314]
Description: putative transposase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-85  285.8   0.0    2.5e-85  285.2   0.0    1.2  1  Transposase_31  Putative transposase, YhgA-like
  ------ inclusion threshold ------
      0.095   12.4   5.9       0.17   11.6   5.9    1.4  1  Yae1_N          Essential protein Yae1, N terminal


Domain annotation for each model (and alignments):
>> Transposase_31  Putative transposase, YhgA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.2   0.0   2.8e-89   2.5e-85       1     203 [.      10     211 ..      10     212 .. 0.99

  Alignments for each domain:
  == domain 1  score: 285.2 bits;  conditional E-value: 2.8e-89
  Transposase_31   1 tpHDalfkellsdpetardfleihlpeelkelldletlklesgsfieeelreslsDlLfsvktkegkegyiyvliEhksspdklmafrLlrYava 95 
                     tpHDa+fk++l++peta dfl+ +lpe++++++d++tl+l+s sfi+e+lr+++sD+L+sv+t+ g +gy+yv+i h+sspd++mafrL+rYa+a
      CTQ26287.1  10 TPHDAVFKRFLRHPETATDFLTLYLPEAILQRCDFSTLRLQSASFIDEDLRAWYSDVLWSVQTTCG-TGYVYVVIKHQSSPDSHMAFRLMRYAIA 103
                     7****************************************************************9.**************************** PP

  Transposase_31  96 imerhlkakekeklplviplvfYhGeee.wplslslldlfddpelakelykseflLvDltkvpddeilekrrlallllvqkhirqrdlaellkkl 189
                     +m+rhl+a++k+ lplv+p++fYhG+++ +p+sl++ld+f+dp+lak+ly + f+L+D+t++pdd+i+++rr+all+l+qkhirqrdl++++++l
      CTQ26287.1 104 AMQRHLDAGHKT-LPLVVPMLFYHGATSpYPFSLNWLDEFADPQLAKTLYGCPFPLIDVTVMPDDDIVQHRRVALLELMQKHIRQRDLSDITESL 197
                     ************.********************************************************************************** PP

  Transposase_31 190 velleelekteeql 203
                     + +++ ++++++ql
      CTQ26287.1 198 AAVVMLGYTNRRQL 211
                     ********999986 PP

>> Yae1_N  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.9   1.9e-05      0.17       3      27 ..     254     278 ..     253     279 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.9e-05
      Yae1_N   3 reGiaeGkeqglqeGfdeGyqeGaq 27 
                 +eG ++G+ +g +eG  eG+qeG++
  CTQ26287.1 254 QEGRQQGRLEGREEGHLEGLQEGSR 278
                 7888888888888888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2378.42
//
Query:       CTQ26288.1  [L=763]
Description: phosphoglycerol transferase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-22   78.8   0.1    7.3e-22   78.1   0.1    1.3  1  Sulfatase  Sulfatase
  ------ inclusion threshold ------
        0.1   12.8   0.0        0.1   12.8   0.0    2.0  2  DUF4381    Domain of unknown function (DUF4381)
       0.25   11.0   4.0        5.1    6.7   0.1    2.3  2  DUF4131    Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.1   1.2e-25   7.3e-22       2     308 ..     163     446 ..     162     447 .. 0.84

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 1.2e-25
                 EEEEEEESSE-TTGSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTT...HHCTTTS-HHHHHHHHTT-EEE CS
   Sulfatase   2 nvvliladdlgagdlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgg...gglpqteatLpellkeaGYnta 97 
                 n+v+i +++l++ +++    +   tp+l r+ +e + f+n++   p +  + a +  ++  +   +   +++     ++  +   +L+++lk+ GY+ +
  CTQ26288.1 163 NLVYIYGESLERTYFDNDAFPNL-TPELGRIKAEAIDFSNTM-QLPGTDYTIAGMVASQCGIPLFAPFEGNA-SasvSSFFPQNICLGDILKNSGYENY 258
                 89***********9999999887.9****************9.44888888888888887665443222222.146699999999************** PP

                 EEEES-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHH..HCCCTSSEEEEEEE-TTSSSTCTCGGHTC CS
   Sulfatase  98 aigkwhlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrvppeggysddrlldealefl..larndkpfflylatlapHappeapdeyak 194
                 ++++ +l +  ++ + k++gfd+++g  +++++++dp ++++           g +dd +lde+ +    l + +k f l+  t  +H+    pd++  
  CTQ26288.1 259 FVQGANLRFAGKDVFLKSHGFDHLYGAEELKTTVADPTYRNDW----------GFYDDTVLDETWKKFeeLSQSGKRFSLFALTVDTHH----PDGFIS 343
                 ************************************9977775..........466667777766666677777**************8....789999 PP

                 CGSTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHC.EEECS CS
   Sulfatase 195 kyatffddgseaarqlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekap.rvsee 292
                 ++++++  + +      +  + +v++  ++i+ ++++++ +   +nt++v+ SDh+a+   + ++  ++k+        r +l+    g k++ ++ + 
  CTQ26288.1 344 RTCERKRYDVD---GKKNLSFSAVSCSQEHIAALIEKIKASPYFKNTVIVVSSDHLAMK--NSAWDYLNKH-------DRSNLFFVLRGDKPQqETLAV 430
                 98888776666...899****************************************77..4566666666.......677766666666666599999 PP

                 EEEGGGHHHHHHHHTT CS
   Sulfatase 293 lvshiDlfptildlag 308
                   + +D  +t+ld +g
  CTQ26288.1 431 KRNTMDNGATVLDILG 446
                 9999*******99987 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   2.1       1.5   8.8e+03      21      35 ..      26      40 ..       7      50 .. 0.65
   2 ?   12.8   0.0   1.7e-05       0.1      20      85 ..      80     144 ..      75     151 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.5
     DUF4381 21 wwlllaalllllllv 35
                ww+ +++ +l l++v
  CTQ26288.1 26 WWFAATLTVLGLFVV 40
                677775555522222 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.7e-05
     DUF4381  20 Gwwlllaalllllllvlalwllrrrkrn..rreAlreLaalradeadakellaalselLkrvalayyp 85 
                 G  + +a++++++ l+++l+++r++  +     A  +La +   + da+ ++ ++sel+k   +  +p
  CTQ26288.1  80 GVGVAVALVAVFGALGWVLRRRRHHPHHvgYSLAALLLALA---SVDASPAFHQISELVKSQSREGDP 144
                 54444434444667777777666666656433343344443...589*************98777666 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   1.0    0.0033        20      10      49 ..       6      45 ..       2      59 .. 0.56
   2 ?    6.7   0.1   0.00085       5.1       8      50 ..      82     122 ..      75     143 .. 0.47

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0033
     DUF4131 10 lalllllllllllllrr.rprrrvllllllllllallgfal 49
                 ++l+l+ ++l++++   r+++ ++++l++l l+++l ++l
  CTQ26288.1  6 SIALFLASVVLYAWK-AgRNTWWFAATLTVLGLFVVLNITL 45
                344444444444444.2355555555555555555555555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00085
     DUF4131   8 vllalllllllllllllrr.rprrrvllllllllllallgfalr 50 
                  + ++l++++ +l+++lrr r +++  +  l++llla   +a  
  CTQ26288.1  82 GVAVALVAVFGALGWVLRRrRHHPHHVGYSLAALLLA---LASV 122
                 3333344444444444322255555544444444444...4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 5518.18
//
Query:       CTQ26289.1  [L=163]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-24   85.9   8.9    1.7e-24   85.9   8.9    1.7  2  DUF2501   Protein of unknown function (DUF2501)


Domain annotation for each model (and alignments):
>> DUF2501  Protein of unknown function (DUF2501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.17   3.1e+03      29      29 ..      43      43 ..      18      75 .. 0.58
   2 !   85.9   8.9   9.6e-29   1.7e-24       1      77 []      82     161 ..      82     161 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.17
     DUF2501 29 e 29
                +
  CTQ26289.1 43 A 43
                1 PP

  == domain 2  score: 85.9 bits;  conditional E-value: 9.6e-29
     DUF2501   1 knnylsassassvkdqLlgklglq.taeaekdsdYqqGlqGlLktsngkqvnLsslgn..lkekvkkkvCdlVLkqaksl 77 
                 k+++ s +sa++vk+q+l+klgl+  +++++d+ Y +GlqGlL+++ng+q++L++lgn  l+++vk+k+CdlVLkq+ ++
  CTQ26289.1  82 KQKLASVTSADNVKNQVLDKLGLStPEKQKQDTSYLDGLQGLLNSKNGQQLDLNTLGNssLAKQVKTKACDLVLKQGVNF 161
                 899********************96688999**********************************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1361.33
//
Query:       CTQ26290.1  [L=247]
Description: DNA biosynthesis protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-18   65.4   0.0    7.1e-18   64.9   0.0    1.2  1  IstB_IS21        IstB-like ATP binding protein
    1.4e-07   32.0   0.1    2.5e-07   31.2   0.1    1.5  1  AAA              ATPase family associated with various cellul
    4.9e-06   26.5   0.0    6.3e-06   26.2   0.0    1.2  1  Bac_DnaA         Bacterial dnaA  protein
    4.9e-05   22.7   0.0    8.7e-05   21.8   0.0    1.5  1  ArsA_ATPase      Anion-transporting ATPase
     0.0005   20.1   0.0    0.00084   19.4   0.0    1.4  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
     0.0014   18.4   0.0     0.0025   17.5   0.0    1.4  1  AAA_30           AAA domain
      0.002   17.4   0.4       0.32   10.1   0.0    2.1  2  PIF1             PIF1-like helicase
     0.0046   17.0   0.0     0.0093   16.0   0.0    1.5  1  ResIII           Type III restriction enzyme, res subunit
     0.0062   16.3   0.3      0.017   14.9   0.3    1.7  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0067   16.8   0.1      0.024   15.0   0.1    1.9  1  RNA_helicase     RNA helicase
  ------ inclusion threshold ------
      0.013   15.4   1.0        2.2    8.1   0.4    2.4  2  NTPase_1         NTPase
      0.013   15.3   0.2        0.6    9.8   0.0    2.4  3  AAA_11           AAA domain
      0.015   14.8   0.0      0.024   14.1   0.0    1.4  1  PhoH             PhoH-like protein
      0.027   14.2   0.0      0.052   13.2   0.0    1.5  1  Sigma54_activat  Sigma-54 interaction domain
      0.028   14.4   0.2       0.08   12.9   0.1    1.8  1  AAA_5            AAA domain (dynein-related subfamily)
      0.056   13.6   0.0       0.11   12.6   0.0    1.6  1  AAA_33           AAA domain
       0.06   12.3   0.0       0.11   11.4   0.0    1.4  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.065   13.3   0.0       0.11   12.6   0.0    1.5  1  Torsin           Torsin


Domain annotation for each model (and alignments):
>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   7.2e-21   7.1e-18      23     163 ..      72     220 ..      51     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 7.2e-21
   IstB_IS21  23 dfraarsldkrkvkeL.atlsfiek....kenivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkra..rrdgklaralkrllkvdllil 114
                  f++ r   + ++++L ++ +++e+     +++++ G +G+GK hla+a+  e   +g+svl ++v+d+++ +k    +r+ + ++ l+ l +vdll++
  CTQ26290.1  72 SFDNYRVECEGQMNALaRARQYVEEfdgnIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTfgNRETSEEQLLNDLSMVDLLVI 170
                 5555555566666666445566654111156789***************************************9763378889999************* PP

   IstB_IS21 115 Ddlgllpldqaeaellfeviekry.errsiiitsnlpfaewdevlgdatl 163
                 D++g+++ ++ e+  + +++++r   +r++ + +n +++e +++lg+ ++
  CTQ26290.1 171 DEIGMQTESRYEKVIINQIVDRRSsSKRPTGMLTNSNMEEMNKLLGERVM 220
                 *********************9963689999999**********998876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1   2.5e-10   2.5e-07       2     120 ..     105     216 ..     104     227 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 2.5e-10
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS...STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk...yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteld 94 
                 +++G pGtGK  la a+++el   g ++l i +++++s    ++g++e + ++l+++++       l+iDEi   ++sr       e+ ++nq++   +
  CTQ26290.1 105 IFSGKPGTGKNHLAAAICNELllrGKSVLIITVADIMSAmkdTFGNRETSEEQLLNDLSMV---DLLVIDEIGMQTESR------YEKVIINQIVDRRS 194
                 799*****************97777888888888888556779************998654...7********999999......66666666665555 PP

                 HTTTSSSTEEEEEEESS.GGGSTHHHH CS
         AAA  95 gvkkkeskvivigatnr.pdkldpall 120
                   k+        + tn+ ++++++ l 
  CTQ26290.1 195 SSKRP-----TGMLTNSnMEEMNKLLG 216
                 55443.....23444443555555555 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   6.3e-09   6.3e-06       1     111 [.      67     178 ..      67     231 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 6.3e-09
                 --SS-SGGG-.---TTTHHHHHHHHHHHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHT..T-HHHHHHHHT CS
    Bac_DnaA   1 LnkrytFetF.viGasnrlAlaaalkvaeapgkkynPlfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrd..kkaeefkeklr 96 
                 L+++  F+++ v+ ++   Ala a++  e+ + +   +++ g+ G Gk HL  ai ne+l   + + v+ +t  + ++ + ++  +  ++ e++ + l 
  CTQ26290.1  67 LHQNCSFDNYrVECEGQMNALARARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIITVADIMSAMKDTFGNreTSEEQLLNDLS 163
                 5677889998766666666777778888888888999999999**************9975..67789999999******999866215568999**** PP

                 T-SEEEEE-GGGGTT CS
    Bac_DnaA  97 kvDvLliDDiqflag 111
                  vD+L+iD+i   ++
  CTQ26290.1 164 MVDLLVIDEIGMQTE 178
                 *********975444 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   8.8e-08   8.7e-05       4      76 ..     104     182 ..     101     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 8.8e-08
                  EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-.STTTHHHHHHTS--BSS-EEET.....SSEEEEE--HHHHHHHH CS
  ArsA_ATPase   4 ilvgGKGGVGKttvsaatavklsekgkkvllist.DPAhslsDsfdqklgkeptkvk.....eNLsavEidpeveleea 76 
                  ++++GK G GK  ++aa+  +l   gk+vl+i++ D    + D f +  + e++ ++     + L++ Ei +++e + +
   CTQ26290.1 104 FIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVaDIMSAMKDTFGNRETSEEQLLNdlsmvDLLVIDEIGMQTESRYE 182
                  689*****************************96488999*******99999999987777777888888888544333 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   8.5e-07   0.00084       3     110 ..     105     221 ..     103     233 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 8.5e-07
                 EEESSTTSSHHHHHHHHHHHHHHTT--EEEEE.EEESSCCCCHHTTEB-HHHH....CCHCCCHHH..HHHCHCHHHH.....EEEEEEEEESS...-T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx....xxxxxxxxx..xxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF
        CbiA   3 iastkGGvGKTtlaanLaralarrglrVllvD.aDpqannlaileglendiep....dlkrllell..ealgkkkall...lkiagvvlnrvdgeneet 91 
                 i s+k G+GK  laa+++  l  rg+ Vl +  aD ++ +    +g+++  e+    dl+  + ll   ++g +++     + i  +v+ r  +++ + 
  CTQ26290.1 105 IFSGKPGTGKNHLAAAICNELLLRGKSVLIITvADIMSAMKD-TFGNRETSEEqllnDLSM-VDLLviDEIGMQTESRyekVIINQIVDRRSSSKRPTG 201
                 89******************************9****99999.666666666668875433.3333246666555533333444444444444433333 PP

                 .TCHHHHHHHHHHCTS-EEE CS
                 .xxxxxxxxxxxxxxxxxxx RF
        CbiA  92 .llkealeelkqrygvpvlg 110
                  l ++++ee ++ +g +v++
  CTQ26290.1 202 mLTNSNMEEMNKLLGERVMD 221
                 03333444444333555555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.5e-06    0.0025      21     108 ..     104     184 ..      88     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.5e-06
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtkqlaal 108
                  +  G +GtGK ++ +a+ + +  +g++v++++    +  ++++ +g +  + ++ll+ l         +ll++DE+gm   +  +++
  CTQ26290.1 104 FIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM-SAMKDTFGNRETSEEQLLNDLS------MVDLLVIDEIGMQTESRYEKV 184
                 5789**************77777789999999886655.78999***98888899996666......359*********988777765 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00032      0.32      23      61 ..     102     140 ..      81     147 .. 0.80
   2 !    5.9   0.1    0.0061       6.1      93     122 ..     155     184 ..     137     203 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00032
                 S-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEESSHH CS
        PIF1  23 klfFvtGsgGtgKtflwkallkklrsegkivlavAssGv 61 
                  +f ++G  GtgK  l  a+++ l  +gk vl +  + +
  CTQ26290.1 102 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 140
                 457789***********************9999876655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0061
                 SCCCHHHHHC-SEEEEECGGGSBHHHHHHH CS
        PIF1  93 gsklaellkktsliiwDEapmverecfeal 122
                 +++l + l+ ++l+++DE+ m   + +e++
  CTQ26290.1 155 EEQLLNDLSMVDLLVIDEIGMQTESRYEKV 184
                 456778888999**************9986 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.3e-06    0.0093       6      82 ..      81     156 ..      78     233 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.3e-06
                 HHHHHHHHHHT........TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.. CS
      ResIII   6 eyQeeaienlleklks..krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseay 82 
                 e Q++a+ + ++ +++   +   +++    GtGK  +aa+++ +ll  g   k ++++   ++++ ++++f +   ++ 
  CTQ26290.1  81 EGQMNALARARQYVEEfdGNIASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIITVADIMSAMKDTFGNRETSEE 156
                 6799999999988876424444899*********************975...57888899999*****99955544433 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   1.7e-05     0.017      34      95 ..     102     175 ..      77     194 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-05
      RuvB_N  34 dhvllyGpPGlGkttlakiiakel....gvklkitsgPvlekagdlaa........lltnleekdvlfideihr 95 
                    +++G PG Gk  la+ i++el    ++ l it + +++  +d  +        ll++l+  d+l idei  
  CTQ26290.1 102 ASFIFSGKPGTGKNHLAAAICNELllrgKSVLIITVADIMSAMKDTFGnretseeqLLNDLSMVDLLVIDEIGM 175
                 45789******************94443334567888888777765432223333399*************964 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.4e-05     0.024       2      84 ..     105     200 ..     104     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.4e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl...........klkkkdsvys.rnpeddfwdgYtgqevvvidDfgqvkdee.npsdlaelirlvsstpypl 84 
                   +++G++g+GK +la  ++++ll +             +  kd++    ++e++ ++  +  + +vid++g ++++  ++ ++++++   ss + p+
    CTQ26290.1 105 IFSGKPGTGKNHLAAAICNELLLRGksvliitvadiMSAMKDTFGNrETSEEQLLNDLSMVDLLVIDEIGMQTESRyEKVIINQIVDRRSSSKRPT 200
                   689*******************333446888888887888899999666777888***************99988644447777777666666655 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.017        17       2      29 ..     104     131 ..     103     140 .. 0.85
   2 ?    8.1   0.4    0.0023       2.2      87     121 ..     156     189 ..     145     196 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.017
                 EEEE--TTSSHHHHHHHHHHHH...GGG CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvk 29 
                 ++ +G+pG+GK  l   ++++l  +g +
  CTQ26290.1 104 FIFSGKPGTGKNHLAAAICNELLLRGKS 131
                 5779****************99776665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0023
                 HHHHHHHHHH-EEEE---STTGGG-HHHHHHHHHH CS
    NTPase_1  87 ealrkalseadviviDEiGkmElkskkfkeaveev 121
                 e+l + ls  d++viDEiG m  +s+  k  ++++
  CTQ26290.1 156 EQLLNDLSMVDLLVIDEIG-MQTESRYEKVIINQI 189
                 4566777899*********.566665555555555 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.1   5.1e+03     160     171 ..      43      54 ..       9      75 .. 0.55
   2 ?    9.8   0.0   0.00061       0.6      18      43 ..      98     127 ..      80     156 .. 0.67
   3 ?    3.3   0.0      0.06        59     205     232 ..     153     179 ..     147     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.1
      AAA_11 160 kskleqerrklk 171
                 ++ le+e+r++k
  CTQ26290.1  43 SEALERENRAMK 54 
                 222222222222 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00061
      AAA_11  18 e....itliqGPPGtgKTktivellsqlls 43 
                 +     ++++G+PGtgK +  ++++++ll 
  CTQ26290.1  98 DgniaSFIFSGKPGTGKNHLAAAICNELLL 127
                 144446799*****************9973 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.06
      AAA_11 205 gagsklleklakkfdvviIDEAaqavEp 232
                 ++ ++ll++l   +d+++IDE ++ +E 
  CTQ26290.1 153 TSEEQLLNDLS-MVDLLVIDEIGMQTES 179
                 56778899996.9*********999986 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.4e-05     0.024      10      74 ..      91     157 ..      85     190 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
                 HHHHHHHH.H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T.T----SS------ CS
        PhoH  10 keylealk.kndivfaiGpaGtGKtylavalavealkkkkvkriiltrpavea.geelGflpgdlee 74 
                 ++y+e  + +    +  G+ GtGK +la a+  e+l ++k   ii +  +++a ++  G  ++ +e+
  CTQ26290.1  91 RQYVEEFDgNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAmKDTFGNRETSEEQ 157
                 57777777555566778***********************999999988887756777777665555 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.3e-05     0.052       4      65 ..      83     144 ..      80     154 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.3e-05
                      -SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTC CS
  Sigma54_activat   4 esealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeel 65 
                      + +al+++++ ++++  + +s +  G+ GtGK+ la ai ++   + k+++ + +a+i + +
       CTQ26290.1  83 QMNALARARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM 144
                      5667778888888888888999*******************999999999999999887654 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     8e-05      0.08       2      76 ..     104     175 ..     103     210 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8e-05
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--H.HHHH--B--.........--------G-SEEEEESGGG CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtte.edlkgrreikngttslvdsplvraaregeilvlDEver 76 
                 ++  G+pGtgK+ la  ++  l   +++v+++   + +++ +d +g re+       ++  l +     ++lv+DE+ +
  CTQ26290.1 104 FIFSGKPGTGKNHLAAAICNELllrGKSVLIITVADIMSAmKDTFGNRET-------SEEQLLNDLSMVDLLVIDEIGM 175
                 6889**************99888999999998887777653566666665.......4444444555557777777765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00011      0.11       3      47 ..     105     174 ..     104     247 .] 0.62

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
      AAA_33   3 llvGlpGsGKstlaerllkklg.....avllssdtlrrrlfgtdqqskt....................d 47 
                 ++ G pG+GK +la  ++++l      + +++  +++++++ t  +++t                     
  CTQ26290.1 105 IFSGKPGTGKNHLAAAICNELLlrgksVLIITVADIMSAMKDTFGNRETseeqllndlsmvdllvideiG 174
                 799**************99998889988889999999999996665555334555555555555554431 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.11      27      65 ..      99     137 ..      79     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                 S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE CS
        MeaB  27 GraqvvGltGvPGaGkstlvealglelrrrGkrvavlav 65 
                 G+     + G PG+Gk  l  a+  el  rGk v ++ v
  CTQ26290.1  99 GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 137
                 666666789***************************998 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00011      0.11      57      83 ..     105     131 ..      72     156 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
                 EEEE-TTSSHHHHHHHHHHHHSTTGGG CS
      Torsin  57 sfhGwtGtGknfvaeiiaenlyrdGlr 83 
                  f G++GtGkn++a  i ++l  +G  
  CTQ26290.1 105 IFSGKPGTGKNHLAAAICNELLLRGKS 131
                 589*****************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1784.73
//
Query:       CTQ26291.1  [L=179]
Description: DNA biosynthesis protein (primosomal protein I) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-25   88.7   0.9    2.5e-25   88.0   0.9    1.4  1  DnaT      DnaT DNA-binding domain


Domain annotation for each model (and alignments):
>> DnaT  DnaT DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.9   1.4e-29   2.5e-25       1      70 [.      89     159 ..      89     160 .. 0.96

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 1.4e-29
        DnaT   1 famtadWqPsedfleilalag.aidedftedelaeFilYWrergkvetqaqWnqkFvqhvkrqwaraqsse 70 
                 fam+a+WqP++df++++al+g a+++++t++ela+F++YW+++gkv++++qW+qk++++v+ ++a +++++
  CTQ26291.1  89 FAMYAGWQPDADFQRLAALWGiALSQPVTPEELAAFVAYWQAEGKVFHHVQWQQKLARSVQISRASNGGQP 159
                 89*******************999999**************************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1435.70
//
Query:       CTQ26292.1  [L=157]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-35  119.5  12.2    1.3e-34  119.1  12.2    1.2  1  ThrE_2    Threonine/Serine exporter, ThrE
    0.00044   19.7  10.5     0.0005   19.5  10.5    1.2  1  ThrE      Putative threonine/serine exporter


Domain annotation for each model (and alignments):
>> ThrE_2  Threonine/Serine exporter, ThrE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1  12.2   1.4e-38   1.3e-34       1     127 [.      13     147 ..      13     149 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 1.4e-38
      ThrE_2   1 qvilafiaalgfavifnvpkrallvagllGavgwlvylllmelgvsialasflaalaigllsellArriktPvtvflipgllplvPGlaaYktvlslvq 99 
                 +++la+i a+gfa++fnvp+ral +++llGa+g+ +++++m+ g +i++a+flaal++g ++  ++r++ +  ++f++++++p+ PG++aY++++s v+
  CTQ26292.1  13 DMLLAAIPAVGFAMVFNVPQRALRWCALLGAIGHGSRMIMMSAGFNIEWATFLAALLVGSIGIQWSRWYLAHPKIFTVAAVIPMFPGISAYTAMISAVK 111
                 5899**********************************************************************************************7 PP

      ThrE_2 100 gn........leeavengiealliagalavGlvlvs 127
                  +        +   ++n+++a +i+gal++Gl+++ 
  CTQ26292.1 112 IShfgyseemMILLLSNFLKASSIVGALSIGLSIPG 147
                 4444444444***********************986 PP

>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5  10.5   5.6e-08    0.0005     112     206 ..      14     107 ..       8     143 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.6e-08
        ThrE 112 vlaaglaaaafallfggdwidflvaflagllggllrlllakrglnsfvleavaaflasllallavslglglnpdaiiigsillLvPGlpltnavr 206
                 +l a++ a++fa++f+    ++ +++l+g++g   r+++   g+n   ++++aa+l++ +++ + ++ +  +p++ ++++++++ PG++  +a+ 
  CTQ26292.1  14 MLLAAIPAVGFAMVFNVPQRALRWCALLGAIGHGSRMIMMSAGFNIEWATFLAALLVGSIGIQWSRW-YLAHPKIFTVAAVIPMFPGISAYTAMI 107
                 6889999***********************************************************8.57889***************9998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1155.08
//
Query:       CTQ26293.1  [L=258]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-66  224.2   8.2    1.7e-66  224.1   8.2    1.0  1  ThrE      Putative threonine/serine exporter
    0.00026   21.1  12.2    0.00045   20.4  12.2    1.4  1  ThrE_2    Threonine/Serine exporter, ThrE
  ------ inclusion threshold ------
        0.3   11.3   5.0          7    6.9   0.2    2.7  2  SpoIIIAC  Stage III sporulation protein AC/AD protein family
        2.3    7.5   4.9        4.3    6.6   4.9    1.4  1  DUF1616   Protein of unknown function (DUF1616)
        7.4    6.7   8.5         26    4.9   0.7    3.8  3  DUF2109   Predicted membrane protein (DUF2109)


Domain annotation for each model (and alignments):
>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.1   8.2   4.7e-70   1.7e-66       1     241 []      13     252 ..      13     252 .. 0.98

  Alignments for each domain:
  == domain 1  score: 224.1 bits;  conditional E-value: 4.7e-70
        ThrE   1 dlilrlGeiLlesGaetyrvedtmkriaralgleevevfvtptsiivsvdeeeesittvrrvrsrgvnleklsevnelsreiaageisleeaeerLdeI 99 
                 +l++++G  Ll++Gae++ ve+  +r++ alg+++ve+ ++ ++i++++ +++e++t +r+  +rg+n++ ++ev++++  ++++ +++ ++e+r+++I
  CTQ26293.1  13 RLCIQCGLFLLQHGAESALVEELSTRLGLALGMDSVESAISSNAIVLTTIKNGECLTSTRKNVDRGINMHVVTEVQHIVILAEHKLLDYRDVEKRFAQI 111
                 68***********************************************779*********************************************** PP

        ThrE 100 erskpryprwlvvlaaglaaaafallfggdwidflvaflagllggllrlllakrglnsfvleavaaflasllallavslgl.glnpdaiiigsillLvP 197
                    + ryprwl vl++gl++a+f+ l +g+w  +lv+f a+ +++++r++l++r++ + ++++++af+a++++ l+++l   +++p++++++s+llLvP
  CTQ26293.1 112 --VPLRYPRWLLVLMVGLSCACFCKLNNGGWDGALVSFCASTVAMYIRQVLTHRSMHPQINFCITAFVATTISGLLLRLPAfASTPTIAMAASVLLLVP 208
                 ..9***************************************************************************8544888************** PP

        ThrE 198 GlpltnavrDllsgdlvsGlaRlveailialaiafGivlalsll 241
                 G+pl+nav+D+++g++++GlaR++ a l++la ++G+v+a++++
  CTQ26293.1 209 GFPLINAVADMFKGHINTGLARWAIASLLTLATCIGVVMAMTVW 252
                 *****************************************985 PP

>> ThrE_2  Threonine/Serine exporter, ThrE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4  12.2   1.3e-07   0.00045       5     128 ..     125     250 ..     121     251 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.3e-07
      ThrE_2   5 afiaalgfavifnvpkrallvagllGavgwlvylllmelgvsialasflaalaigllsellArr..iktPvtvflipgllplvPGlaaYktvlslvqgn 101
                 + + +++f+ ++n  +   lv+     v+  ++ +l++  ++  +   ++a++ + +s ll r+  +    t+ + +++l lvPG  + ++v  +++g+
  CTQ26293.1 125 VGLSCACFCKLNNGGWDGALVSFCASTVAMYIRQVLTHRSMHPQINFCITAFVATTISGLLLRLpaFASTPTIAMAASVLLLVPGFPLINAVADMFKGH 223
                 556778888888888888888889999999999999997776666666666666666666666522344567888899********************* PP

      ThrE_2 102 leeavengiealliagalavGlvlvsl 128
                 +++ +     a l ++a ++G+v++++
  CTQ26293.1 224 INTGLARWAIASLLTLATCIGVVMAMT 250
                 ***********************9986 PP

>> SpoIIIAC  Stage III sporulation protein AC/AD protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2     0.002         7      30      54 ..     197     221 ..     172     222 .. 0.89
   2 ?    5.6   0.7    0.0051        18      25      41 ..     232     248 ..     229     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.002
    SpoIIIAC  30 ielagkiiilllalpllsalfetvr 54 
                 i +a+ +++l+   pl++a+ ++ +
  CTQ26293.1 197 IAMAASVLLLVPGFPLINAVADMFK 221
                 88999*****************986 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0051
    SpoIIIAC  25 eiAslielagkiiilll 41 
                 +iAsl++la++i +++ 
  CTQ26293.1 232 AIASLLTLATCIGVVMA 248
                 89**********99876 PP

>> DUF1616  Protein of unknown function (DUF1616)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.9    0.0012       4.3       6      82 ..     180     255 ..     173     257 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0012
     DUF1616   6 lllllailvpvlnetplRivlglplvLflPGYaliaaLFPe.krdi.dgieRlaLSfglSiaivpliglvlnvtpwgir 82 
                  ++ l++ +p +++tp  i+++  ++L++PG+ li+a+    k+ i +g+ R+a++    + ++  ig+v+ +t wg+r
  CTQ26293.1 180 TISGLLLRLPAFASTPT-IAMAASVLLLVPGFPLINAVADMfKGHInTGLARWAIASL--LTLATCIGVVMAMTVWGLR 255
                 44455555666666665.7788889999******999654433445357888876655..566789***********98 PP

>> DUF2109  Predicted membrane protein (DUF2109)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.017        59      58      71 ..      48      61 ..      28      66 .. 0.81
   2 ?    4.9   0.7    0.0071        26      32      45 ..     169     182 ..     149     193 .. 0.84
   3 ?   -0.4   0.2      0.33   1.2e+03      36      56 ..     233     251 ..     226     252 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.017
     DUF2109 58 vgsTlesNAiAstl 71
                v s ++sNAi  t 
  CTQ26293.1 48 VESAISSNAIVLTT 61
                789*******8764 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0071
     DUF2109  32 lnFaiaaliallik 45 
                 +nF+i a +a++i+
  CTQ26293.1 169 INFCITAFVATTIS 182
                 89********9996 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.33
     DUF2109  36 iaalialliktplgliaAiay 56 
                 ia+l  l+++t +g+++A+++
  CTQ26293.1 233 IASL--LTLATCIGVVMAMTV 251
                 4444..567889999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1897.78
//
Query:       CTQ26294.1  [L=394]
Description: p-hydroxybenzoate hydroxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-85  285.6   0.0    6.4e-85  285.5   0.0    1.0  1  FAD_binding_3  FAD binding domain
    0.00054   20.1   0.0     0.0015   18.8   0.0    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0018   17.6   0.1     0.0031   16.8   0.1    1.3  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0038   16.5   0.1     0.0059   15.9   0.1    1.4  1  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.049   12.3   0.0      0.089   11.5   0.0    1.4  1  HI0933_like    HI0933-like protein
       0.11   11.8   0.1       0.17   11.1   0.1    1.4  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.5   0.0   2.1e-88   6.4e-85       1     348 [.       2     342 ..       2     343 .. 0.96

  Alignments for each domain:
  == domain 1  score: 285.5 bits;  conditional E-value: 2.1e-88
                    EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS..S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHHCHH CS
  FAD_binding_3   1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp..radglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradleles 94 
                    +t+V+I+GaGp+Gl+l++lL++aG+ +v++e+++ ++vl+  ra++l++ t++llr++G+++r+ aeg +++++++++ ++     ++++ l++++
     CTQ26294.1   2 KTQVAIIGAGPSGLLLGQLLHNAGIHTVILERQTPQYVLGriRAGILESGTVDLLREAGVAQRMDAEGLVHHGVEFLFDGQ-----RVPVALSELT 92 
                    69**************************************99***************************************.....999999999* PP

                    CST-CEE--HHHHHHHHHHHHHHHTEEE.TCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGG.EEEEEEEEEEEEE CS
  FAD_binding_3  95 spervtvypqteleriLvehaeerglqv.rfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgie.fegeetvyeagvl 188
                     +++v vy+qte++r+L++++++ g+ + +   ev    +d ++ ++++++ ++ge+ ++++++++G+DG+++ +r++++   +++ e+v ++g+l
     CTQ26294.1  93 DGKSVMVYGQTEVTRDLMAARAASGAPIvYGVSEVA--IHDAKSDRPTITYLSEGETCRLECDFIAGCDGFHGVSRQSIPAGiLQTYESVWPFGWL 186
                    *************************66615556777..9999999*************************************9999********** PP

                    EEEEEC.-SCCCTTCCEEEEECCTTEEEEEECCE.TEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEEEEEEEEEEESSSE CS
  FAD_binding_3 189 dvlfda.dlsdiveplvlilsaesrgvmviPlen.tlerfyvqvearaekeersekfteeevkarlreivgektldveieevsawtvaqrvaekyr 282
                    ++l+d+ +++    p +li++ ++rg+ ++++++ t++r+y+qv++++++e +s++++++e+k rl+e+ ++  ++  + e+s+++++++v+e+++
     CTQ26294.1 187 GLLADTpPVN----P-ELIYAHHQRGFVLCSQRSlTRSRYYLQVPLSDKVEAWSDERFWQELKSRLPEELASRLVTGHSLEKSIAPLRSFVVEPMQ 277
                    ***9997777....5.9******************************************************************************* PP

                    ETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 283 kgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdf 348
                     gr+fl+GDAaHi+pPtg++GlN+a++D+ +L + L + +  +++++lL +Y++ +++++++ ++f
     CTQ26294.1 278 YGRLFLVGDAAHIVPPTGAKGLNLAASDVNYLWRILREYYH-RGRSDLLAAYSQLALDRVWKGERF 342
                    **************************************999.***************999987766 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.9e-07    0.0015       1      28 [.       7      34 ..       7      37 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.9e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   I+GaG sGl++ +lL++ag++ ++le++
     CTQ26294.1  7 IIGAGPSGLLLGQLLHNAGIHTVILERQ 34
                   9*************************97 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1     1e-06    0.0031       2      31 ..       7      35 ..       6      42 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1e-06
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkgn 31
                 IiGaGP Gl  +  l +ag+ + +ilE+++
   CTQ26294.1  7 IIGAGPSGLLLGQLLHNAGI-HTVILERQT 35
                 9*******************.689***985 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1     2e-06    0.0059      17      99 ..       2      77 ..       1     111 [. 0.78

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-06
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTBSEEEEETTTHHHHHHTT---EEESSEEEESEHHHH CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlfsaivvrkpakelLdelgikyedegdyvvvkdaalf 99
                ++ v+i+GaG+sGL  ++ l ++ +++++iler+       +  G+   a +++  + +lL+e g++     +  +v + ++f
  CTQ26294.1  2 KTQVAIIGAGPSGLLLGQLLHNA-GIHTVILERQTPQ----YVLGR-IRAGILESGTVDLLREAGVAQRMDAE-GLVHHGVEF 77
                678*****************999.*********8643....22233.24456666666777777776554444.355666665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     3e-05     0.089       2      32 ..       4      34 ..       3      38 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 +v++iG+G++Gl+    ++++g ++++le++
   CTQ26294.1  4 QVAIIGAGPSGLLLGQLLHNAGIHTVILERQ 34
                 79*************************9986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   5.8e-05      0.17     144     175 ..       4      35 ..       1      82 [. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.8e-05
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveard 175
                  +++++G+G+ G+ l + l+++g +++++e+ +
   CTQ26294.1   4 QVAIIGAGPSGLLLGQLLHNAGIHTVILERQT 35 
                  68999999999999999999999977777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2944.90
//
Query:       CTQ26295.1  [L=293]
Description: Transcriptional regulator PobR, AraC family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-18   66.3   1.1    2.2e-18   66.3   1.1    1.7  2  HTH_18          Helix-turn-helix domain
    3.8e-12   46.0   0.8    1.6e-07   31.2   0.5    2.5  2  HTH_AraC        Bacterial regulatory helix-turn-helix protein
     0.0042   16.8   0.0      0.016   14.9   0.1    1.9  2  Cupin_2         Cupin domain
  ------ inclusion threshold ------
      0.023   14.4   0.6      0.023   14.4   0.6    1.6  2  AraC_binding_2  AraC-binding-like domain


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1         3   1.3e+04      61      68 ..     189     196 ..     185     201 .. 0.48
   2 !   66.3   1.1     5e-22   2.2e-18       1      80 [.     208     286 ..     208     287 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3
                 HHHHHHHH CS
      HTH_18  61 srFsrafr 68 
                 ++F+r + 
  CTQ26295.1 189 RHFARLIE 196
                 34444433 PP

  == domain 2  score: 66.3 bits;  conditional E-value: 5e-22
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +a+  g+s  +L++l+++++g++   +l+++ + +Arr L + t ++++++   lGFsd+++Fsr+fr++ g++P+++r+
  CTQ26295.1 208 YAKLIGLSVTHLNYLCREFYGCSALGVLHQRLMLEARRNL-QYTRMTITQLSDYLGFSDAAYFSRFFRRYSGMSPKAFRE 286
                 68999***********************************.56***********************************97 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.4e-05      0.11       1      37 [.     195     231 ..     195     236 .. 0.95
   2 !   31.2   0.5   3.7e-11   1.6e-07       7      41 ..     250     285 ..     246     286 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.4e-05
                 HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-H CS
    HTH_AraC   1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtP 37 
                 +++++ + l +++ A   g+S +++  l+++ +G++ 
  CTQ26295.1 195 IESHYRQHLPLAEYAKLIGLSVTHLNYLCREFYGCSA 231
                 799********************************95 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 3.7e-11
                 CT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   7 tnltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                 t++ti++++d lgf +  yFsr F+++ Gm+P+++r
  CTQ26295.1 250 TRMTITQLSDYLGFsDAAYFSRFFRRYSGMSPKAFR 285
                 689********************************9 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   3.6e-06     0.016      13      57 ..      43      87 ..      37     101 .. 0.87
   2 ?   -1.7   0.0      0.55   2.5e+03      16      37 ..     149     170 ..     144     176 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.6e-06
                EECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEE CS
     Cupin_2 13 shrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrf 57
                 h H +  +++y  +G++e++++g + ++++ ++ ++pa   H+f
  CTQ26295.1 43 VHQHAEMVQLLYLHQGRAEIEIEGATAVMTESCIQVVPALCIHGF 87
                68888888***********************************99 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.55
                 SSSEEEEEEEEESEEEEEECTE CS
     Cupin_2  16 HpgedeffyVleGegeltvdge 37 
                 H+  + ++y l G++ ++++ +
  CTQ26295.1 149 HDAREMMLYSLLGTLLVWLNRQ 170
                 6666689999999999998865 PP

>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.6   5.1e-06     0.023      44     164 ..      38     160 ..      30     168 .. 0.81
   2 ?   -2.5   0.0      0.78   3.5e+03     132     151 ..     212     231 ..     173     244 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.1e-06
  AraC_binding_2  44 avsirpselddfylvqlplsGraeveqggrevvlgpgdavvldpgrpyrlrwsadce..qlvlrip.ralLerplraplrfaprldldsgagalw 135
                     +++ir  + ++ +++++ ++Grae+e  g+++v ++ +  v+ +     + +s++++   l+l +p  + +e + ++pl+   + ++  ++g++ 
      CTQ26295.1  38 QWHIRVHQHAEMVQLLYLHQGRAEIEIEGATAVMTESCIQVVPALCIHGFNFSPGTQgfVLSLALPlLSRFENQFGRPLDVLSV-PQCVPVGRSR 131
                     56777777788*******************************999999999999999556666666988888888888887777.4447888888 PP

  AraC_binding_2 136 rrllrslvaelaelgpalasspllaaqle 164
                     +r+ + + a  +e  +++ ++++++ +l+
      CTQ26295.1 132 GRMHTLFSALREEYCEEHDAREMMLYSLL 160
                     88888888888888888888888776665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.78
  AraC_binding_2 132 galwrrllrslvaelaelgp 151
                      +l + +l +l++e  +++ 
      CTQ26295.1 212 IGLSVTHLNYLCREFYGCSA 231
                     34555666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2056.77
//
Query:       CTQ26296.1  [L=263]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-10   40.4   1.0    1.5e-10   40.4   1.0    1.7  2  GerE      Bacterial regulatory proteins, luxR family
    1.5e-05   24.6   0.1    4.2e-05   23.2   0.1    1.7  1  HTH_38    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.024   14.7   0.0    1.5  1  HTH_29    Winged helix-turn helix
      0.053   13.3   0.0       0.11   12.3   0.0    1.5  1  HTH_23    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.4   6.3e+03      21      33 ..       4      16 ..       2      16 .. 0.81
   2 !   40.4   1.0   3.4e-14   1.5e-10       3      56 ..     177     230 ..     175     231 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
                HHHHHHHTS-HHH CS
        GerE 21 keIAeelniSekT 33
                k  A++l+ Se T
  CTQ26296.1  4 KSLADRLQASEGT 16
                6679999999987 PP

  == domain 2  score: 40.4 bits;  conditional E-value: 3.4e-14
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                 L+  Er+vLrlla+G   ++IA+ l  S+kT++++k ++m++L ++s +e + +
  CTQ26296.1 177 LTLSERKVLRLLAKGWGINQIAALLKKSNKTISAQKNSAMRRLSLRSNAEMYAW 230
                 7888*********************************************99875 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   9.3e-09   4.2e-05       5      38 ..     177     209 ..     175     209 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 9.3e-09
      HTH_38   5 LsleeReeIerllaeGlslreIArrLgrspsTIs 38 
                 L+l+eR +  rlla+G+++ +IA +L++s  TIs
  CTQ26296.1 177 LTLSER-KVLRLLAKGWGINQIAALLKKSNKTIS 209
                 9*****.889***********************8 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   5.3e-06     0.024       3      30 ..     183     209 ..     182     215 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.3e-06
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvy 30 
                 ++l+lla+G++ + qiA+ll  s +t+ 
  CTQ26296.1 183 KVLRLLAKGWG-INQIAALLKKSNKTIS 209
                 79********9.*************996 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.6e-05      0.11       9      35 ..     183     209 ..     181     213 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvy 35 
                 ++l+lla+G+ + +IA++L  s  T++
  CTQ26296.1 183 KVLRLLAKGWGINQIAALLKKSNKTIS 209
                 589*******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1801.53
//
Query:       CTQ26297.1  [L=224]
Description: Transcriptional activator protein BglJ [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-13   48.2   0.0    8.7e-13   47.6   0.0    1.3  1  GerE           Bacterial regulatory proteins, luxR family
  ------ inclusion threshold ------
      0.025   14.3   0.0      0.044   13.5   0.0    1.5  1  Sigma70_r4_2   Sigma-70, region 4
      0.038   13.8   0.0       0.17   11.7   0.0    2.1  2  HTH_Tnp_Tc3_1  Tc3 transposase
       0.05   13.1   0.0      0.096   12.2   0.0    1.5  1  Sigma70_r4     Sigma-70, region 4


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   1.9e-16   8.7e-13       2      55 ..     150     203 ..     149     205 .. 0.95

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 1.9e-16
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvr 55 
                 +Ls+ E  +Lr++  G+s  +IA +ln   kT+++hk n+m+KL+v+s++ l +
  CTQ26297.1 150 PLSPTEHAILRYMSWGYSLSDIAIQLNRNIKTIRAHKFNAMTKLGVRSDIGLLN 203
                 8***********************************************998876 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   9.9e-06     0.044      26      54 .]     165     193 ..     151     193 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.9e-06
                   ---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  26 glsykEIAellgisegtVksrlsRArkkL 54 
                   g+s  +IA +l+ + +t++ + + A+ kL
    CTQ26297.1 165 GYSLSDIAIQLNRNIKTIRAHKFNAMTKL 193
                   89************************998 PP

>> HTH_Tnp_Tc3_1  Tc3 transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         2   9.2e+03      23      28 ..      76      81 ..      72      81 .. 0.85
   2 ?   11.7   0.0   3.9e-05      0.17       5      38 ..     151     183 ..     149     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2
                   HHHHHH CS
  HTH_Tnp_Tc3_1 23 lsEiar 28
                   ++E+ar
     CTQ26297.1 76 VHEMAR 81
                   79*997 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.9e-05
                    --HHHHHHHHHHHHTT--HHHHHHHHT--HHHHH CS
  HTH_Tnp_Tc3_1   5 LSDtEraillvmkllnvklsEiarklsRsRnCIr 38 
                    LS tE+ail  m   + +ls+ia +l+R  + Ir
     CTQ26297.1 151 LSPTEHAILRYMS-WGYSLSDIAIQLNRNIKTIR 183
                    999*********6.799***********988887 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.1e-05     0.096       5      48 ..     151     193 ..     149     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.1e-05
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 L++ e  +l++    g++l++I+ +l+    ++r ++++A+ kL
  CTQ26297.1 151 LSPTEHAILRYMS-WGYSLSDIAIQLNRNIKTIRAHKFNAMTKL 193
                 5666666655444.467**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1673.25
//
Query:       CTQ26298.1  [L=152]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-27   96.2   0.1    1.6e-27   96.0   0.1    1.0  1  tRNA_edit  Aminoacyl-tRNA editing domain


Domain annotation for each model (and alignments):
>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.1   8.9e-32   1.6e-27       3     120 ..      25     139 ..      23     142 .. 0.96

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 8.9e-32
   tRNA_edit   3 gtktieelaaalgvdpsaiaKtlvlkdkkgelvlvllpgdreldlkklakllgakklrlaseeelrellgvepGgvgPlglkaagvpvllDeslkeypt 101
                  t+t++ +aaa +v+p++iaKtl lk  k++ vl++++gd +ld kkl++ +g +k+r+ s +e+   +g+++Ggv+P+gl ++ + v+ D sl++y++
  CTQ26298.1  25 STATVALAAAAHNVEPGQIAKTLSLK-IKDKIVLIVARGDARLDNKKLKETFG-AKARMLSSDEVVTWTGHPVGGVCPFGL-ENPLAVYCDVSLRHYQE 120
                 6899**********************.5888**********************.***************************.8**************** PP

   tRNA_edit 102 vvvgagengatlelspedl 120
                 v+ +ag  ++ ++++pe +
  CTQ26298.1 121 VLPAAGAIHSAVRIEPERM 139
                 ***************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1208.46
//
Query:       CTQ26299.1  [L=447]
Description: Chitibiose transporter ChbC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-56  191.3  27.4    2.1e-56  191.3  27.4    1.4  2  PTS_EIIC  Phosphotransferase system, EIIC


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.3  27.4   1.2e-60   2.1e-56       1     324 []      36     359 ..      36     359 .. 0.87
   2 ?   -3.3   0.1      0.19   3.4e+03     126     141 ..     406     421 ..     384     428 .. 0.57

  Alignments for each domain:
  == domain 1  score: 191.3 bits;  conditional E-value: 1.2e-60
    PTS_EIIC   1 sdgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiaygl......akggkgvaglagligllafnll 93 
                 +dgf+ ++p+ i+g++ll++++ p+s+d+++    ++ +++++++  +  +++++++++++ ++++i+y+l      + + ++++   ++++++a    
  CTQ26299.1  36 RDGFISAMPFMIVGSFLLVFAYPPFSPDTTWGFARAWLDLAKEFEGRILTPFDMTMGIMSIYICAAISYNLgkhyekSNQLDPFM--CAMLSIMA---- 128
                 79*****************************88899***********************************87443322333333..33333333.... PP

    PTS_EIIC  94 aaisvlllaagalasakasilgiktlstgvfgaiivgllaaylynkfek.nitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnal 191
                      +ll+a++  + +++++   +++tg+f+ai+v++  +++++++++ ni i+LP+++p+ ++++f  +i++lvv+l ++++ l+i   + +++  +
  CTQ26299.1 129 -----FLLIAAP--KTNGTLPVDSLGGTGIFTAILVAIYCVEMMRFLKAhNIGIRLPDQVPPMIKNSFDLLIPVLVVVLTLYPLSLFIQHHFDMLI-PQ 219
                 .....3334444..35899********************************************************777776666655555555555.54 PP

    PTS_EIIC 192 g..ll....lggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvs..vmfGgpgatlalyiaaflekks 282
                     +    + +++sl ++l++ ++ +ll++ G+H+a i+  ++++++ ++   nqq++ +g +++hi+ + f++  +++Gg+gat +l+++++ +++s
  CTQ26299.1 220 AimAIfkplVSAADSLPAILLAVLIGHLLWFAGIHGAAIVSGMLQMFWLTNLGMNQQALAQGAPLPHIFMEAFWTffIVVGGSGATMGLVFCYL-RSRS 317
                 446225888**********************************************************************************665.566* PP

    PTS_EIIC 283 kqkkllgsaaltpflfGItepleFgfpfvlnlllfipallag 324
                 ++++++g+++++p lf+I+ep++Fg p+v+n+++fip+lla+
  CTQ26299.1 318 AHLRSIGRLSVVPSLFNINEPVIFGTPIVMNPVFFIPFLLAP 359
                 ****************************************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.19
    PTS_EIIC 126 aiivgllaaylynkfe 141
                  i+ + ++a++y  f 
  CTQ26299.1 406 VIVLACVSAIIYFPFF 421
                 2333334444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3593.84
//
Query:       CTQ26300.1  [L=262]
Description: ferric iron reductase involved in ferric hydroximate transport [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-31  109.9   2.1    3.2e-31  108.9   2.1    1.5  1  FhuF      Ferric iron reductase FhuF-like transporter
    1.3e-07   31.4   6.7    2.3e-07   30.6   6.7    1.4  1  FhuF_C    FhuF 2Fe-2S C-terminal domain


Domain annotation for each model (and alignments):
>> FhuF  Ferric iron reductase FhuF-like transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   2.1   3.6e-35   3.2e-31       1     162 [.      93     238 ..      93     239 .. 0.89

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 3.6e-35
                 HHHHHHHHHHHHHHHHHHHHHH-EE---STTTEEEEEET.TEEEEEEE---...TTT-EES-TT----TTSGGGB----GGGS.HHHHIIIIIIIHHHH CS
        FhuF   1 slWlkrYfglllpPllhllleygialeahlqNvllvldd.grpvrlllrdfegvslkaellpelpalpeevkrlltddpeelr.eevfyglfvnhlapl 97 
                 slW+++Y+gll+pPl+ +ll+ +++l ++++++++++++ gr++++++  +                       ++ d+e l  + ++++l+ + l+p+
  CTQ26300.1  93 SLWAQWYIGLLVPPLMLALLNEPQGLSLAPEHFHVEFHEsGRAACFWIDVH-----------------------SDADIERLSpQARMDALVTRTLQPV 168
                 79**********************************************999.......................33445555556679*********** PP

                 HHHHHHTTSS-HHHHHHHHHHHHHHHHHHSGGGHHHHH.....HT-TT-SEE-..---HHHHHH-XXXXXX CS
        FhuF  98 iealaaagglsekllWsnvaellewylaelpelaerfa.....qalLfaptlp.gkanllrvrladeaeas 162
                 +ealaa+g ++ kl+Wsn+++l++wyl+e+ +l  + +     q+++f+++l+ g++n+l +r+++ +e++
  CTQ26300.1 169 VEALAATGEINSKLIWSNTGYLINWYLGEMRALLGDERlaalrQHCFFEKQLAdGQDNPL-WRTVMLREGQ 238
                 ******************************5544444445666*****************.***9999975 PP

>> FhuF_C  FhuF 2Fe-2S C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   6.7   2.5e-11   2.3e-07       1      21 []     241     261 ..     241     261 .. 0.96

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.5e-11
      FhuF_C   1 RrsCCLyYrlpggeyCgsCPL 21 
                 Rr+CC++Yrlp++  Cg+C L
  CTQ26300.1 241 RRTCCQRYRLPDVQQCGDCTL 261
                 9******************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2154.46
//
Query:       CTQ26301.1  [L=348]
Description: putative transmembrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-46  156.3   0.2    7.1e-46  155.9   0.2    1.1  1  GGDEF     Diguanylate cyclase, GGDEF domain
     0.0017   18.6   0.0     0.0027   17.9   0.0    1.4  1  GGDEF_2   GGDEF-like domain


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.9   0.2     8e-50   7.1e-46       2     160 ..     190     343 ..     189     344 .. 0.95

  Alignments for each domain:
  == domain 1  score: 155.9 bits;  conditional E-value: 8e-50
                 SB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHHH CS
       GGDEF   2 ahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaaela 100
                 ++D+lTgL+NRr l+++l+++l+     + +  vllld+d+Fk++nd+yGh +GD+ L++v+ ++++++r++d+vaR+gg+eF++ll++ s+e+a + a
  CTQ26301.1 190 MLDPLTGLYNRRGLQNRLDTLLALD---GDNHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRNAVRSRDIVARFGGEEFMVLLTNSSEETAWQTA 285
                 68********************999...456789***************************************************************** PP

                 HHHHHHHHCS-EEE.TTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSS CS
       GGDEF 101 erirrllaklkepv.elsgeelyvtisiGialappeegedleellkeAdealyeaKkagrn 160
                 erir+ + +lk+p+  ++  +++vtisiG + +    ++++e+ l +Ad alyeaK++grn
  CTQ26301.1 286 ERIRQRVYDLKIPHmFNESVATNVTISIGLTPLI---NDNIEQALARADGALYEAKNKGRN 343
                 *************9667778899******99997...99*********************8 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     3e-07    0.0027      22      87 ..     217     307 ..     201     334 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3e-07
     GGDEF_2  22 pyvvvviel.......eedaer........llraleealral..gpdalvavrgdrlvlllpaedeedaeallerlarrlgg............l 87 
                 +++v+++++       +    +        +l ++++a+r++  ++d+++   g+++ +ll+ ++ee+a + +er+++r+ +             
  CTQ26301.1 217 NHYVLLLDIdhfkaynD----HyghmmgdqALIRVSAAIRNAvrSRDIVARFGGEEFMVLLTNSSEETAWQTAERIRQRVYDlkiphmfnesvaT 307
                 599******55555541....1333444446666666665555355777777888**********************999886666555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2451.21
//
Query:       CTQ26302.1  [L=117]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-30  102.8   7.8    1.3e-29  102.1   7.8    1.3  1  DUF1435   Protein of unknown function (DUF1435)


Domain annotation for each model (and alignments):
>> DUF1435  Protein of unknown function (DUF1435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   7.8     7e-34   1.3e-29       1      73 [.      39     111 ..      39     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 7e-34
     DUF1435   1 mlqkrlesgWgvlLPavliallalaelsldqlrviivlallltvvmLyhkrlRHylLLPsclalagglalvll 73 
                 mlq+ l+sgWgv++P++li++l +a++s+d +r+++++++l++++m++h++lRH++LLPsc+al+gg++l+++
  CTQ26302.1  39 MLQRALGSGWGVMIPGALIVALGYAGVSADVWRILVAVGMLMSAAMIWHRQLRHFILLPSCVALIGGIMLMIV 111
                 9*********************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 904.76
//
Query:       CTQ26303.1  [L=342]
Description: 16S RNA m2G1207 methylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-61  204.7   0.0    1.1e-60  204.1   0.0    1.3  1  MTS              Methyltransferase small domain
    1.6e-56  190.7   0.0    4.1e-56  189.4   0.0    1.7  2  MTS_N            Methyltransferase small domain N-terminal
    2.8e-12   47.2   0.5    4.3e-11   43.4   0.1    2.3  2  Methyltransf_25  Methyltransferase domain
    3.4e-11   43.2   0.0    5.6e-11   42.5   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    7.9e-09   36.2   0.1    2.9e-08   34.4   0.0    1.9  2  Methyltransf_12  Methyltransferase domain
    3.2e-07   30.9   0.1    8.8e-07   29.5   0.0    1.8  2  Methyltransf_11  Methyltransferase domain
    6.4e-07   29.1   0.0    9.2e-07   28.5   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    3.3e-06   26.8   0.0    5.5e-05   22.9   0.0    2.0  2  NodS             Nodulation protein S (NodS)
    2.4e-05   24.2   0.0    9.6e-05   22.3   0.0    1.9  2  Methyltransf_23  Methyltransferase domain
     0.0006   19.2   0.0    0.00096   18.5   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain
      0.001   19.0   0.0     0.0018   18.2   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
     0.0022   17.4   0.0     0.0066   15.8   0.0    1.5  1  Methyltransf_10  RNA methyltransferase
     0.0054   16.4   0.0     0.0089   15.7   0.0    1.3  1  Cons_hypoth95    Conserved hypothetical protein 95
  ------ inclusion threshold ------
       0.03   13.6   0.0      0.048   13.0   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.034   14.1   0.0      0.056   13.4   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
      0.036   13.8   0.0      0.052   13.3   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.051   12.9   0.1      0.084   12.2   0.1    1.3  1  GidB             rRNA small subunit methyltransferase G
      0.066   12.9   0.0       0.11   12.2   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.071   12.8   0.0       0.11   12.1   0.0    1.4  1  UPF0020          Putative RNA methylase family UPF0020
      0.076   12.3   0.0       0.11   11.7   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
       0.14   11.4   0.0        3.1    7.0   0.0    2.3  3  N6_Mtase         N-6 DNA Methylase
       0.16   11.5   0.0       0.27   10.8   0.0    1.4  1  MetW             Methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.1   0.0   1.3e-63   1.1e-60       1     169 []     166     333 ..     166     333 .. 0.99

  Alignments for each domain:
  == domain 1  score: 204.1 bits;  conditional E-value: 1.3e-63
                 CEEEEEETTSTTTTS--HHHHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EE CS
         MTS   1 eltlktlpgvFskdklDkGsklLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfd 99 
                 +lt+ktlpgvFs+d+lD Gs+lLl+tl+ +++gkvlD+GcGaGvl+aala++sp++++tl+dv+a A+e+++++l++n+l+++v+as+v++ev+ ++fd
  CTQ26303.1 166 NLTIKTLPGVFSRDGLDVGSQLLLSTLEPHTKGKVLDVGCGAGVLAAALASHSPKVRLTLCDVSAPAVEASRATLATNGLAGDVFASNVFSEVN-GRFD 263
                 589*******************************************************************************************.**** PP

                 EEEE---STTTCHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS--EEEEEESSEEEEE CS
         MTS 100 livsNPPfhagkatelavaeeliaeAkeaLkegGeLliVanrklgyeslleelfgnvevvaktkkfkvlk 169
                 +i+sNPPfh+g +t+l++a++li+ A ++L++gGeL+iVan +l+y+++l+e+fg +ev+a+t++fkv++
  CTQ26303.1 264 MIISNPPFHDGLQTSLEAAQALIRGAVRHLNSGGELRIVANAFLPYPQVLDETFGFHEVIAQTGRFKVYR 333
                 ********************************************************************96 PP

>> MTS_N  Methyltransferase small domain N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.4   0.0     5e-59   4.1e-56       1     156 []       8     162 ..       8     162 .. 0.98
   2 ?   -2.5   0.0       5.9   4.8e+03      84     106 ..     281     303 ..     278     304 .. 0.86

  Alignments for each domain:
  == domain 1  score: 189.4 bits;  conditional E-value: 5e-59
                 HHHHHTTHHHHTT-EEEEEE---SSHHHHS--SEEEEEE..SBHHHHHHHHHHHGGG.EEE-SS--HH..TT-SEEEEE--SSHHHHHHHHHHHHTTS- CS
       MTS_N   1 SqvllRnlelfenksvllageieddlpkelkkasksvtvlsqdfnhaqalkkklkeekvefgleleae..skfdlvilylpKaKeeakylLalllsklk 97 
                 S+vllR+++ fe+ +vl+ag+++ddlp++l++a+++ ++  q+f+h+q l++++++ +v+f+l +ea+  +++d++i+y+pK+K+ea+++L++lls l+
  CTQ26303.1   8 SEVLLRHSDDFESARVLFAGDLQDDLPARLDTAASRAHT--QQFHHWQVLNRQMGD-TVRFSLVAEAAdvAECDTLIYYWPKNKPEAQFQLMNLLSLLP 103
                 9**************************************..************999.7*****9999889***************************** PP

                 TT-EEEEEEEGGGTGGGHHHHHTTTS--EEE---TTEEEEEEE--S-----GGGG-EEE CS
       MTS_N  98 kgteilvVGenksGvksaekllaeylkvkKiDsARhCsLykaelekepkfdledwiksY 156
                 +g +i+vVGen+sGv+sae++laey+ ++K+DsAR+C+Ly+++lek+p+fd+++++ +Y
  CTQ26303.1 104 VGSDIFVVGENRSGVRSAEQMLAEYTPLNKVDSARRCGLYHGRLEKQPTFDADAFWGEY 162
                 ********************************************************998 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.9
                 HHHHHHHHHHTTS-TT-EEEEEE CS
       MTS_N  84 eakylLalllsklkkgteilvVG 106
                  a+ l++ ++ +l++g+e+ +V+
  CTQ26303.1 281 AAQALIRGAVRHLNSGGELRIVA 303
                 57889999999*******99996 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.52   4.2e+02      31      85 ..      34      91 ..      14     100 .. 0.68
   2 !   43.4   0.1   5.3e-14   4.3e-11       1      97 []     200     297 ..     200     297 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.52
                     HHHHHHHHHHHHHTTT.TEEEEESBC...CGBSSSTTTEEEEEEESTGGGSSHHHHHHH CS
  Methyltransf_25 31 eemleaareraeeegl.nvefvqgda...edlpfedgsfDlvvssgalhhlsdedleka 85
                     ++ l++a++ra+ +++ ++++++ ++    ++++ ++  D+  +  +l ++++++ ++a
       CTQ26303.1 34 PARLDTAASRAHTQQFhHWQVLNRQMgdtVRFSLVAEAADVAEC-DTLIYYWPKNKPEA 91
                     55678888888888778778777666311446678899999999.56555555554444 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 5.3e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEEST.GG...GSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssga.lh...hlsdedlekalkeia 90 
                      vLd+GcG G l++ala + +k ++t +D+s+ ++ea r+ ++ +gl  ++   ++  +++ +g+fD+++s+   +h    +s e ++++++ + 
       CTQ26303.1 200 VLDVGCGAGVLAAALASHSPKVRLTLCDVSAPAVEASRATLATNGLAGDVFASNV--FSEVNGRFDMIISN-PpFHdglQTSLEAAQALIRGAV 290
                      9*****************889********************98887777777666..567789*******5.5599664367788999****** PP

                      HHEEEEE CS
  Methyltransf_25  91 rvLkpgG 97 
                      r+L+ gG
       CTQ26303.1 291 RHLNSGG 297
                      *****99 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   6.9e-14   5.6e-11       3     109 ..     196     301 ..     194     325 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 6.9e-14
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl.....naladpd 91 
                       + +vlD+GCG+G l+ +la    pk ++++ D s+ a+e +r+ ++ +gl    F    + e +      +fD+i+sn ++       l + +
       CTQ26303.1 196 TKGKVLDVGCGAGVLAAALA-SHSPKVRLTLCDVSAPAVEASRATLATNGLAGDVFASNVFSEVN-----GRFDMIISNPPFhdglqTSLEAAQ 283
                      5679****************.7789**************************96666655555566.....99*******888888889999*** PP

  Methyltransf_31  92 kileeiervlkpggilli 109
                      + ++++ r l++gg+l i
       CTQ26303.1 284 ALIRGAVRHLNSGGELRI 301
                      ***************987 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       4.5   3.7e+03      35      72 ..      39      77 ..      24     103 .. 0.53
   2 !   34.4   0.0   3.5e-11   2.9e-08       1      99 []     201     299 ..     201     299 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 4.5
  Methyltransf_12 35 dakeklakrennnnnnvelealdlldldgg....ssfDlvva 72
                      a+ + + ++ +++++++ +  d           ++ D+  +
       CTQ26303.1 39 TAASRAHTQQFHHWQVLNRQMGDTV---RFslvaEAADVAEC 77
                     4444444444444444443333322...22334555555555 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 3.5e-11
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl.....kdirevldni 89 
                      L++GcG G l++al+ + p +++t +D+s+ a+e+ ++ la ++       +++a +++++  g  fD+++++  +h       +  +++++ +
       CTQ26303.1 201 LDVGCGAGVLAAALASHSPKVRLTLCDVSAPAVEASRATLATNGL----AGDVFASNVFSEVNG-RFDMIISNPPFHDGlqtslEAAQALIRGA 289
                      8********************************888888888886....556666666655555.******99888876688889999****** PP

  Methyltransf_12  90 rklLkpgGrl 99 
                       ++L+ gG l
       CTQ26303.1 290 VRHLNSGGEL 299
                      *******976 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       7.9   6.4e+03      33      66 ..      39      76 ..      31      94 .. 0.52
   2 !   29.5   0.0   1.1e-09   8.8e-07       1      94 [.     201     299 ..     201     301 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 7.9
                     HHHHHCCHHT-....EEEETTEECCCTSS-TT-EEEEE CS
  Methyltransf_11 33 lakekaseegl....kvefvvadaeklpfednsfDlvv 66
                     +a ++a+++++     ++ + +d  ++ +  +  D+  
       CTQ26303.1 39 TAASRAHTQQFhhwqVLNRQMGDTVRFSLVAEAADVAE 76
                     45455555554433322234444444555555555555 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 1.1e-09
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-T..T-EEEEEEES-CCC-.....CCHHHHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaekl.pfed..nsfDlvvssevlhhv.....edpekalkei 84 
                      LdvGcG+G la+ala++    r++ +D+s+ +++++++   ++g     + +d+     f +  + fD+++s+  +h       e  +++++ +
       CTQ26303.1 201 LDVGCGAGVLAAALASHSpkVRLTLCDVSAPAVEASRATLATNG-----LAGDVFASnVFSEvnGRFDMIISNPPFHDGlqtslEAAQALIRGA 289
                      8**************88889************************.....7888887524655547********97776656667999******* PP

                      HHHEEEEEEE CS
  Methyltransf_11  85 aRvLkpgGll 94 
                      +R L  gG l
       CTQ26303.1 290 VRHLNSGGEL 299
                      ********87 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   1.1e-09   9.2e-07     152     233 ..     189     268 ..     158     270 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.1e-09
        PrmA 152 lealeklvkegeevlDvGtGSGiLaiaaakLgak.kvvavDiDevAvkvakeNaelNkveaklevalseellk..eekadvivaN 233
                 l +le +   + +vlDvG+G+G+La a a    k + +  D+   Av+++++ ++ N+++  +     +++++  ++++d+i++N
  CTQ26303.1 189 LSTLEPHT--KGKVLDVGCGAGVLAAALASHSPKvRLTLCDVSAPAVEASRATLATNGLAGDVFA---SNVFSevNGRFDMIISN 268
                 44455443..348************997777766256668********************98743...3333223589*****99 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.21   1.7e+02      83     148 ..      47     115 ..      35     124 .. 0.72
   2 !   22.9   0.0   6.7e-08   5.5e-05      33     113 ..     186     268 ..     181     304 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.21
        NodS  83 ervkesshiswivsdvqqfst.dekfdlivvaevlyyi.edvaelraavrnlvsllap.dgqlvfGsar 148
                 ++ +++  ++  + d  +fs+  e  d+  +  ++yy  +++ e +  + nl+sll   ++ +v G  r
  CTQ26303.1  47 QQFHHWQVLNRQMGDTVRFSLvAEAADVAECDTLIYYWpKNKPEAQFQLMNLLSLLPVgSDIFVVGENR 115
                 455667777778889999997256678888888888863678899999******996514567777766 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 6.7e-08
        NodS  33 qilrlslaqgsiadalevGcaaGalterlapyck..rltvvdvveeaiararervkesshiswivsdvqqfstdekfdlivva 113
                 q+l  +l+  + +++l+vGc aG l+  la ++   rlt+ dv   a++ +r  +        + +     + + +fd+i+  
  CTQ26303.1 186 QLLLSTLEPHTKGKVLDVGCGAGVLAAALASHSPkvRLTLCDVSAPAVEASRATLATNGLAGDVFASNVFSEVNGRFDMIISN 268
                 6666677888899*******************95348************9999887744333333333333568889988865 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.9   1.6e+03     121     137 ..      40      56 ..      28      73 .. 0.74
   2 !   22.3   0.0   1.2e-07   9.6e-05      20      89 ..     194     268 ..     182     303 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.9
  Methyltransf_23 121 laslkedrllldwlylv 137
                      +as ++++ +++w+ l+
       CTQ26303.1  40 AASRAHTQQFHHWQVLN 56 
                      45558999999998764 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 1.2e-07
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae...kakkaqkdqfdeqeaaepqgkfdlIvlr 89 
                        ++g+vLd+GcG G l+  l+ +     +t+ D s  ave  +    +     d f ++  +e +g+fd I+++
       CTQ26303.1 194 PHTKGKVLDVGCGAGVLAAALASHSPkvRLTLCDVSAPAVEASRatlATNGLAGDVFASNVFSEVNGRFDMIISN 268
                      67999**********99999966644379*********9999889994455555555555555669******998 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.2e-06   0.00096      63     139 ..     197     273 ..     149     328 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.2e-06
                     -SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS-----TTEEEEES-TTTS-----SEEEEESSGGG CS
  Methyltransf_2  63 lkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehlsageeervefvgGdffkdslPeaDaillkrvlhD 139
                       +++DvG G+G+la+a +s+ P++++++ D++  + +A +   a++    ++ + ++f +   + D+i+ +   hD
      CTQ26303.1 197 KGKVLDVGCGAGVLAAALASHSPKVRLTLCDVSAPAVEASRATLATNGLAGDVFASNVFSEVNGRFDMIISNPPFHD 273
                     45799***************************887666666533333333344555555333335666666666666 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.2e-06    0.0018      15      86 ..     197     265 ..     187     267 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.2e-06
  Methyltransf_18  15 gsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklkeeevdtv 86 
                      + +v+D+G+  g+l+++l++++   + + +D+++ ++e+++++++++gl    +v  s+ +++++ + +d++
       CTQ26303.1 197 KGKVLDVGCGAGVLAAALASHSPKVRLTLCDVSAPAVEASRATLATNGLAG--DVFASNVFSEVN-GRFDMI 265
                      3489********************************************964..667777777775.446655 PP

>> Methyltransf_10  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   8.1e-06    0.0066     102     196 ..     196     280 ..     185     299 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.1e-06
                      S--EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT.T-TTTEEEEE--TT-SCCHHSSTTSS-EEEEEE-S---SS----- CS
  Methyltransf_10 102 aqvraldiGvGanCiyPllGvteyGWrfvgsevddvslasakaivesnsklsdaiklrkqkekkaifdglieenerydvtlCnPPfhaslaeak 195
                      ++ ++ld+G Ga  +   l  +    r + ++v+  +++ ++a +++n  l++ +            + + e+n r+d+ + nPPfh+ l+ + 
       CTQ26303.1 196 TKGKVLDVGCGAGVLAAALASHSPKVRLTLCDVSAPAVEASRATLATN-GLAGDVFAS---------NVFSEVNGRFDMIISNPPFHDGLQTSL 279
                      467899*****************************************9.788776443.........44568899************9876544 PP

                      - CS
  Methyltransf_10 196 a 196
                      +
       CTQ26303.1 280 E 280
                      4 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-05    0.0089      13     135 ..     169     281 ..     163     297 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-05
                    EEXTTXXXXXSSSHHHHHHHHHHHCCCHCC-EEEETT-TTSHHHHHHHHTT-S.EEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS CS
  Cons_hypoth95  13 LkvlegkstRPttdrvrealFnilaaeiegarvLDlfaGsGalglEAlSRgak.kavlvekdkeavkilkenleelkleeetaelkedaleallkl 107
                    +k+l+g   R   d   + l ++l+++ +g+ vLD+ +G G+l+   +S   k + +l + ++ av++ ++ l++ +l +  +++  + +++++  
     CTQ26303.1 169 IKTLPGVFSRDGLDVGSQLLLSTLEPHTKGK-VLDVGCGAGVLAAALASHSPKvRLTLCDVSAPAVEASRATLATNGLAG--DVFASNVFSEVN-- 259
                    5566666666666666667778899998888.************999998876468999**************9999887..778777777764.. PP

                    --SS-EEEEEEE--SSSTTCH.HHHHHH CS
  Cons_hypoth95 108 akkkeefdivflDPPyakellieevlel 135
                        ++fd++  +PP++++l+  + le+
     CTQ26303.1 260 ----GRFDMIISNPPFHDGLQ--TSLEA 281
                    ....56************965..44433 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.8e-05     0.048      47     120 ..     196     265 ..     185     329 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.8e-05
                      -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-TTS-T-EEEE CS
  Ubie_methyltran  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLpfeddsfDvv 120
                      +  kvlDv +G+g la++l+++   k +++++D+++  ++ +++ l  +g   ++    +n   + + ++ fD++
       CTQ26303.1 196 TKGKVLDVGCGAGVLAAALASH-SPKVRLTLCDVSAPAVEASRATLATNGLAgDV--FASN--VFSEVNGRFDMI 265
                      4559***************987.67899**************9999999987332..2222..234445555555 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.9e-05     0.056      21      70 ..     192     239 ..     183     259 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.9e-05
  Methyltransf_32  21 akesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekr 70 
                       + +++ +v+DvG+G g L+ +la+  +  k++++  d+++  ve++++ 
       CTQ26303.1 192 LEPHTKGKVLDVGCGAGVLAAALAS--HSPKVRLTLCDVSAPAVEASRAT 239
                      45667789*****************..33678888889988888887765 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.4e-05     0.052      70     123 ..     193     245 ..     184     304 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.4e-05
                 T--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTT CS
        PCMT  70 elkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldl 123
                 e + + +vL+vG+G+G l+a la    +k r+   + ++  ve+++++l +++l
  CTQ26303.1 193 EPHTKGKVLDVGCGAGVLAAALASHS-PKVRLTLCDVSAPAVEASRATLATNGL 245
                 4455679*************999763.444455566666666666666666665 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1    0.0001     0.084      42      79 ..     189     227 ..     166     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0001
                 GGCS-CCC-..EEEETSTTTTTHHHHHHH-TTSEEEEEE CS
        GidB  42 lellkekrd.kviDvGsGaGlPGipLaiarpelkltLle 79 
                 l++l+ + + kv+DvG GaG+ +  La   p+++ltL +
  CTQ26303.1 189 LSTLEPHTKgKVLDVGCGAGVLAAALASHSPKVRLTLCD 227
                 44555555436**************************88 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00014      0.11      46      98 ..     196     247 ..     184     258 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
  Methyltransf_16  46 sklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnknalks 98 
                      +k +vl++G G+G+   a+a++ p+++++l D++  ++e  +  ++ n+  l+ 
       CTQ26303.1 196 TKGKVLDVGCGAGVLAAALASHSPKVRLTLCDVSApAVEASRATLATNG--LAG 247
                      5669****************************99878888888887755..555 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014      0.11      79     170 ..     223     307 ..     189     335 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
                 EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSH CS
     UPF0020  79 lygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenk 170
                 l   D  + +v+++r  +   g+++ + +s+  +    + +g +d+i++npP+ + l++  +     +++ r + r+l++gg l +++++  
  CTQ26303.1 223 LTLCDVSAPAVEASRATLATNGLAGDVFASN-VF---SEVNGRFDMIISNPPFHDGLQTSLEAA---QALIRGAVRHLNSGGELRIVANAFL 307
                 5556666677777777777777777777666.23...356789***********9998876553...4556667777777777777766555 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.11      61     133 ..     195     267 ..     185     289 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
                 -TT-EEEEES-TTSHHHHHHHHH.H--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-----SEEEE CS
        CMAS  61 kpGmtlLdiGcGWGslvrraver.ydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedldekvdrvvs 133
                 +   ++Ld+GcG G l+   +++   v+     +S+   + ++++++  +l+ +v      + ++++++d ++s
  CTQ26303.1 195 HTKGKVLDVGCGAGVLAAALASHsPKVRLTLCDVSAPAVEASRATLATNGLAGDVFA-SNVFSEVNGRFDMIIS 267
                 455689********9988766651456666667788999999999999999887754.56699*******9998 PP

>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       6.3   5.1e+03     271     295 ..      48      78 ..      31      79 .. 0.66
   2 ?    1.8   0.0      0.14   1.2e+02      36      61 ..     186     211 ..     183     229 .. 0.85
   3 ?    7.0   0.0    0.0039       3.1     112     137 ..     247     273 ..     232     288 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6.3
    N6_Mtase 271 tykek......skevdkfskvveleeiaend 295
                  ++++        ++ +fs v+e  ++ae d
  CTQ26303.1  48 QFHHWqvlnrqMGDTVRFSLVAEAADVAECD 78 
                 4444433333356666899999999988866 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.14
    N6_Mtase  36 klivellepksgesvyDpacGsggll 61 
                 +l+ + lep+++ +v+D  cG+g l 
  CTQ26303.1 186 QLLLSTLEPHTKGKVLDVGCGAGVLA 211
                 7888999*****9********99775 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0039
    N6_Mtase 112 gdtlekpkfe.kdkkfdvvvaNppfnq 137
                 gd ++++ f+  + +fd++++Nppf +
  CTQ26303.1 247 GDVFASNVFSeVNGRFDMIISNPPFHD 273
                 566666666656789**********86 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00033      0.27      14      34 ..     197     217 ..     186     271 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00033
        MetW  14 gsrvldlGcGdGellellkee 34 
                 + +vld+GcG G l   l+ +
  CTQ26303.1 197 KGKVLDVGCGAGVLAAALASH 217
                 679***********9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2495.46
//
Query:       CTQ26304.1  [L=137]
Description: DNA polymerase III, psi subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-45  153.0   0.1    4.8e-45  152.9   0.1    1.0  1  DNA_III_psi  DNA polymerase III psi subunit
    0.00038   20.0   0.9    0.00071   19.1   0.3    1.8  2  CSTF_C       Transcription termination and cleavage factor C-


Domain annotation for each model (and alignments):
>> DNA_III_psi  DNA polymerase III psi subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.1   5.4e-49   4.8e-45       2     125 ..       3     126 ..       2     127 .. 0.99

  Alignments for each domain:
  == domain 1  score: 152.9 bits;  conditional E-value: 5.4e-49
                  XHHHHHHHHCTXXEEEESXGGGTS--S-----TT--EEEE-SS---TTSHHHHHHHHHTT--GGGEEEE-CCGGGGS-TT-B-EEEEES--S--SSBS CS
  DNA_III_psi   2 nrrdllLqemgItqWqlrkpevlkgevaislpeeirllivaeeapaaaepLlqdvLrslelkaeqvlvltpeqlaklesdhkelvwllgveakenlkg 99 
                  +rrd++Lq++gItqW lr+p +l+ge+aislpe+irl++vae++p+ +epL+ d+Lr+l+++++qvl ltpe++a+l++d+++++w lg+ea++ l+g
   CTQ26304.1   3 SRRDWQLQQLGITQWSLRRPGALQGEIAISLPEHIRLVMVAETPPSLTEPLIGDILRALAVTPDQVLQLTPERVAMLPQDSRCNSWRLGTEASLPLAG 100
                  89************************************************************************************************ PP

                  -EEEE--HHHHHH-HHHHHHHHHHHH CS
  DNA_III_psi 100 kqlqspsLaeLkqdaqaKraLWqqic 125
                  +q+++p+++eL+ +a a+raLWqqic
   CTQ26304.1 101 AQVSTPAFDELQTSAPARRALWQQIC 126
                  *************************9 PP

>> CSTF_C  Transcription termination and cleavage factor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   7.9e-08   0.00071      11      28 ..      67      84 ..      66      86 .. 0.94
   2 ?   -3.5   0.0      0.94   8.5e+03       5      11 ..     118     124 ..     116     125 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 7.9e-08
      CSTF_C 11 QVLqLseeqIaaLPpdqR 28
                QVLqL++e  a+LP d R
  CTQ26304.1 67 QVLQLTPERVAMLPQDSR 84
                ***************988 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.94
      CSTF_C   5 kaeLlqQ 11 
                 +++L qQ
  CTQ26304.1 118 RRALWQQ 124
                 5666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1084.11
//
Query:       CTQ26305.1  [L=148]
Description: acetylase for 30S ribosomal subunit protein S18 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-18   64.8   0.0    9.8e-18   64.5   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    5.3e-13   49.0   0.0    6.1e-13   48.8   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.9e-12   46.9   0.0    3.6e-12   46.5   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      1e-10   41.5   0.0    1.4e-10   41.0   0.0    1.2  1  FR47             FR47-like protein
    6.7e-07   29.6   0.0    7.6e-07   29.4   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    3.4e-05   24.0   0.0    4.5e-05   23.6   0.0    1.2  1  Acetyltransf_6   Acetyltransferase (GNAT) domain
    4.6e-05   23.1   0.0    5.9e-05   22.7   0.0    1.1  1  GNAT_acetyltran  GNAT acetyltransferase
    8.2e-05   23.3   0.1    0.00011   22.9   0.1    1.3  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    0.00034   20.3   0.3     0.0012   18.5   0.3    1.8  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
    0.00048   20.2   0.0    0.00073   19.6   0.0    1.3  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    0.00071   19.7   0.0     0.0012   18.9   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
      0.005   16.3   0.0      0.012   15.1   0.0    1.5  1  Acetyltransf_15  Putative acetyl-transferase
  ------ inclusion threshold ------
      0.074   12.8   0.2        0.1   12.3   0.2    1.4  1  PanZ             Acetyltransferase (GNAT) domain, PanZ


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   7.1e-21   9.8e-18       7     117 .]      18     120 ..       6     120 .. 0.80

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 7.1e-21
                     HHHHHTHHHHHHHHHHHHHHHHHSTTC..EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEE CS
  Acetyltransf_1   7 llvesffppnedaseeefeesfsleae..gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivl 99 
                     ++++ + +p+++ +++       ++ e  + +  + dge ++f+    + d    +a +  +aV+p+y+++GlG+aLle++++++++ g+  ++l
      CTQ26305.1  18 IEKRAHAFPWSEQTLAS------NQGEryCNYQLSVDGEMAAFAITQVVLD----EATLFNIAVDPAYQRRGLGRALLEHVIDEVEKLGVVTLWL 102
                     44444445555555555......22231255559999*******7777777....8**********************************888** PP

                     EEETTEHHHHHHHHHTTE CS
  Acetyltransf_1 100 aveedndaairlYeklGF 117
                     +v+++n+aai+lYe +GF
      CTQ26305.1 103 EVRASNVAAIALYESVGF 120
                     *************99**9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   4.5e-16   6.1e-13      33     108 ..      42     122 ..      15     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 4.5e-16
  Acetyltransf_10  33 llvaeeggkivGvi..el.rdgshisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFka 108
                       + + ++g+++ ++  ++  d+  +  ++Vdp+y+++G+g+aLle+v++e+ek g  +  l+v+as+ +a+++Ye++GF +
       CTQ26305.1  42 NYQLSVDGEMAAFAitQVvLDEATLFNIAVDPAYQRRGLGRALLEHVIDEVEKLGVVTlWLEVRASNvAAIALYESVGFNE 122
                      555666777776665566678889999****************************************************87 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   2.6e-15   3.6e-12      18      75 ..      55     121 ..      30     122 .. 0.67

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 2.6e-15
                     EEEEEES..TCTEEEEE-GGGTTSSHHHHHHHH....TT.SEEEEEEEEE....THHHHHHHHHHTTEE CS
  Acetyltransf_7  18 ialslld..aeitrlaVdpeyrgkGiGraLlea....ae.kgiileqlel....naekaikfYeklGFe 75 
                     ++ +++   a + ++aVdp+y+++G+GraLle+    +e  g+   +l+l    ++ +ai++Ye+ GF 
      CTQ26305.1  55 AITQVVLdeATLFNIAVDPAYQRRGLGRALLEHvideVEkLGVV--TLWLevraSNVAAIALYESVGFN 121
                     33333335556777******************955431145532..2333333244499*********6 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0     1e-13   1.4e-10      16      80 ..      58     123 ..      46     130 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1e-13
                 EEE-TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-.S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  16 ilrkdggelgalqvlpehrrrGlgsrlvkalakeiaerg.ktvllvvvasNtpsirlyeklGfeki 80 
                  + +d   l+ + v+p  +rrGlg+ l + ++ e+ + g  t+ l v+asN ++i+lye++Gf+++
  CTQ26305.1  58 QVVLDEATLFNIAVDPAYQRRGLGRALLEHVIDEVEKLGvVTLWLEVRASNVAAIALYESVGFNEA 123
                 44567799*****************************873588899*****************997 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   5.5e-10   7.6e-07      16     144 ..       7     130 ..       1     140 [. 0.85

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 5.5e-10
  Acetyltransf_4  16 yaeyvvntaitfeyevssveefekflealdsekeyvflvae.sdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeq 109
                     +++ ++ +a+  e    +  + e+ l++  ++++y    +  ++++++ a  + +     d++ +  + + + + + +glgr+l++++++   + 
      CTQ26305.1   7 LSTADLTKAWHIEKRAHAFPWSEQTLASN-QGERYCNYQLSvDGEMAAFAITQVVL----DEATLFNIAV-DPAYQRRGLGRALLEHVIDEVEKL 95 
                     5667889999999999************6.77777644444499999998877444....4677777777.699********************* PP

  Acetyltransf_4 110 nienllaeiaspnensiqfhkalGFelvgifkkci 144
                     ++ +l  e+ ++n ++i++++++GF+ + i ++++
      CTQ26305.1  96 GVVTLWLEVRASNVAAIALYESVGFNEATIRRNYY 130
                     ****************************9999987 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.3e-08   4.5e-05      72     128 ..      41      97 ..      11     104 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 3.3e-08
  Acetyltransf_6  72 rlyvlrldgrpvAvalglrsgdrlyywlggydpelaklspgllllweliedaaeeGl 128
                       y l++dg+ +A+a++ +  d + ++ +++dp++ + ++g+ ll ++i++    G+
      CTQ26305.1  41 CNYQLSVDGEMAAFAITQVVLDEATLFNIAVDPAYQRRGLGRALLEHVIDEVEKLGV 97 
                     558899*********************************************999987 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   4.3e-08   5.9e-05     164     236 ..      47     122 ..      36     129 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.3e-08
  GNAT_acetyltran 164 kngeivsgasSysvyekgieieidTkedyrrkgLAtivaaalileclkrglyPsW...DaaneaSvaLaekLGYef 236
                       +ge+ + a + +v +++   +i+ +++y+r+gL +++ ++ i+e  k g++  W    a n a++aL+e++G++ 
       CTQ26305.1  47 VDGEMAAFAITQVVLDEATLFNIAVDPAYQRRGLGRALLEHVIDEVEKLGVVTLWlevRASNVAAIALYESVGFNE 122
                      5899999************************************************544466*************86 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   7.6e-08   0.00011      51     138 .]      38     121 ..       3     121 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 7.6e-08
  Acetyltransf_3  51 eegygwaivlkdtgviGsvglrdleeedeeaelgymlapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     e+ +++++ + ++ +  ++  + +  ++ +  + + ++p+++++G+++  ++ +++ + e+lg+ +l+ ++ ++N a i+++e++Gf+
      CTQ26305.1  38 ERYCNYQLSVDGE-MAAFAITQ-VVLDE-ATLFNIAVDPAYQRRGLGRALLEHVIDEV-EKLGVVTLWLEVRASNVAAIALYESVGFN 121
                     4445566633333.33333222.22222.256779999********************.9999************************6 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.3   8.6e-07    0.0012      80     140 ..      65     123 ..       8     127 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.6e-07
                     EEEEEEESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEE CS
  Acetyltransf_8  80 rGiHlligeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfeke 140
                     + + +++ ++++ ++gl++all+++++ + +  ++    +E +++N +ai+l+e++Gf+++
      CTQ26305.1  65 TLFNIAV-DPAYQRRGLGRALLEHVIDEVEK-LGVVTLWLEVRASNVAAIALYESVGFNEA 123
                     4455555.577888*************9855.59************************875 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.3e-07   0.00073      74     127 ..      64     122 ..      52     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.3e-07
                     EEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--.....SSHHHHHTTT-EE CS
  Acetyltransf_9  74 agvtgVavapehrgrgvlskLlaraleemreegqplsllfP.....ssipiYrrfGyei 127
                     a +  +av+p +++rg+ ++Ll+++++e+++ g+   +l       ++i++Y++ G++ 
      CTQ26305.1  64 ATLFNIAVDPAYQRRGLGRALLEHVIDEVEKLGVVTLWLEVrasnvAAIALYESVGFNE 122
                     67889**************************9999999988877877889999999975 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     9e-07    0.0012       2      56 ..      43      95 ..      42      99 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9e-07
  Acetyltransf_CG  2 feltldegeevafleYevrkegvldfthTeVpeelrGkGiAkkLvkaalddaree 56
                     ++l +d ge +af+  +    ++ ++  + V+++++++G++++L ++++d++++ 
       CTQ26305.1 43 YQLSVD-GEMAAFAITQ-VVLDEATLFNIAVDPAYQRRGLGRALLEHVIDEVEKL 95
                     777777.6555555444.555689999***********************99875 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.7e-06     0.012      74     140 ..      65     124 ..      39     140 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.7e-06
  Acetyltransf_15  74 eiYtlyvsekyrgkGlakklLeeslkelkknYkvdnelllaLHlnpkDksMnisfalYyslgFrkgl 140
                       ++++ v++ y+++Gl + lLe+ ++e+ k        +++L l         + alY s+gF++++
       CTQ26305.1  65 TLFNIAVDPAYQRRGLGRALLEHVIDEVEK------LGVVTLWLEVRASN-VAAIALYESVGFNEAT 124
                      5899********************999954......44566666554333.4678899999998876 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   7.4e-05       0.1      47     102 ..      48     104 ..       1     130 [. 0.60

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.4e-05
        PanZ  47 dRlLgAvkvel.edkeaelsdlcVRevTRrRGVgsyLleearrqaPevkswvlaeed 102
                 d  ++A ++++   +ea+l ++ V     rRG g+ Lle++ ++  ++   +l  e 
  CTQ26305.1  48 DGEMAAFAITQvVLDEATLFNIAVDPAYQRRGLGRALLEHVIDEVEKLGVVTLWLEV 104
                 666778777651567999***********************9998554444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1162.26
//
Query:       CTQ26306.1  [L=225]
Description: dUMP phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-20   73.9   0.0    2.3e-20   73.4   0.0    1.4  1  HAD_2           Haloacid dehalogenase-like hydrolase
    2.2e-15   57.5   0.0    6.5e-15   56.0   0.0    1.7  1  Hydrolase       haloacid dehalogenase-like hydrolase
      6e-11   42.2   0.0    1.2e-10   41.3   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like
    7.6e-06   26.4   0.0      1e-05   26.0   0.0    1.2  1  HAD             haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   5.1e-24   2.3e-20      63     177 ..      80     194 ..       6     195 .. 0.85

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 5.1e-24
       HAD_2  63 eellrkyneekkkkevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekalekl.klkkeeviyvGD 160
                  el + +++ + +  + p++g+ +lL+ L + ++++gi+T++ ++ ++  le++g+ ++Fd  ++se+v+  KPd++++  al +  +  +++v++vGD
  CTQ26306.1  80 GELNDAFMNAMAE-ICAPLPGAVSLLNAL-QGKVRMGIITNGFTSLQQTRLERTGLRDHFDLLIISEQVGVAKPDARIFDYALAQAgNPPRSRVLMVGD 176
                 5677788888888.9**************.99*****************************************************94556789****** PP

       HAD_2 161 sp.tDieaakkagikvia 177
                 +  +Di ++ +ag+ +++
  CTQ26306.1 177 TAeSDIRGGVNAGLATCW 194
                 ***************998 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   1.4e-18   6.5e-15       2     210 .]       4     189 ..       3     189 .. 0.82

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 1.4e-18
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH..HHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar..sgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgr 98 
                 + ++fD d TL t        +  +                    ++ + +   ++  ++f+        a++kp w++ +      + ai+s+q q++
  CTQ26306.1   4 DWIFFDADETLFTFD-----SFSGL--------------------QRMFLDYsvTFTAEDFQD-----YQAVNKPLWVDYQ------NGAITSLQLQHQ 66 
                 578999999999666.....44444....................566666644666699999.....999**********......666666666655 PP

                 HHHHH.........TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTE.EEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHH CS
                 xxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  99 tvall.........qaralavftiadplkvkpeaaeavasLkaagi.evvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireL 186
                               + +   + ++a+ + + p+a+ ++++L+  g  +++++t+++ + ++  +++ G +d+fd  i s+ ++vakp+ +++ +a+ + 
  CTQ26306.1  67 RFDSWaerlnvppgELNDAFMNAMAEICAPLPGAVSLLNALQ--GKvRMGIITNGFTSLQQTRLERTGlRDHFDLLIISEQVGVAKPDARIFDYALAQA 163
                 433334799999995556666666666777************..5559*************************************************** PP

                 T.STGGGEEEEESSHH.HHHHHHHTT CS
                 x.xxxxxxxxxxxxxx.xxxxxxxxx RF
   Hydrolase 187 q.gkpeevamVGDgvn.DaaalaaAg 210
                 +  + ++v+mVGD++  D+ ++ +Ag
  CTQ26306.1 164 GnPPRSRVLMVGDTAEsDIRGGVNAG 189
                 945599**************999997 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   2.7e-14   1.2e-10       3      74 ..     149     217 ..     148     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 2.7e-14
                     STTSSHHHHHHHHHH---.GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEES CS
  Hydrolase_like   3 gKPepemydfalevlgsd.peevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddlae 74 
                      KP + ++d+al++ g + +++vlm+GD+ ++Di+g+ naG+ ++     ++++ +l+ +  +p++ + +l e
      CTQ26306.1 149 AKPDARIFDYALAQAGNPpRSRVLMVGDTAESDIRGGVNAGLATCWLN--AHQR-ELP-ADLEPDWTVTSLSE 217
                     6**************7764789**********************9974..2333.333.33567777777766 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   2.3e-09     1e-05       1     183 [.       6     181 ..       6     184 .. 0.70

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.3e-09
         HAD   1 alfDfDgTLldgdsle....lllrfllrrgaprl..wralreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpklldpgale 92 
                 ++fD D TL++ ds+     ++l++ +   a++   ++a++  l+ ++ + + ++  ++l+++    +a     +  +  ++f+ ++++ ++  pga+ 
  CTQ26306.1   6 IFFDADETLFTFDSFSglqrMFLDYSVTFTAEDFqdYQAVNKPLWVDYQNGAITS--LQLQHQRFDSWAERLnVPPGELNDAFMNAMAEICAPLPGAVS 102
                 79*****************977776666555554558888888999994444444..3333333333333321444444444443333333444***** PP

         HAD  93 llaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDsp.sD 183
                 ll+ +++  +r  ++++g+  l +  l++ g    l        +++    ++   v  +   a++ +++ a+  ++++++v  +GD+  sD
  CTQ26306.1 103 LLN-ALQGKVRMGIITNGFTSLQQTRLERTG----LRD------HFDLL--IISEQVGVAKPDARIFDYALAQAGNPPRSRVLMVGDTAeSD 181
                 ***.66888**********************....999......99999..44444444335588999888889999999999999987555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1689.63
//
Query:       CTQ26307.1  [L=529]
Description: peptide chain release factor 3 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-46  158.1   0.0      3e-46  157.4   0.0    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.3e-46  156.9   0.1    3.9e-46  156.1   0.1    1.4  1  RF3_C        Class II release factor RF3, C-terminal domain
    5.8e-11   42.6   0.2    2.3e-10   40.7   0.2    2.1  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    0.00011   22.3   0.0    0.00021   21.3   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00026   21.0   0.0     0.0005   20.1   0.0    1.4  1  EFG_II       Elongation Factor G, domain II
  ------ inclusion threshold ------
      0.049   13.2   0.0      0.095   12.3   0.0    1.4  1  Ras          Ras family
      0.053   13.6   0.1       0.12   12.4   0.1    1.5  1  Phg_2220_C   Conserved phage C-terminus (Phg_2220_C)
       0.12   13.1   0.0       0.26   12.0   0.0    1.5  1  LptE         Lipopolysaccharide-assembly
       0.14   12.3   0.0       0.48   10.7   0.0    1.9  1  Roc          Ras of Complex, Roc, domain of DAPkinase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.4   0.0   1.5e-49     3e-46       3     193 ..      13     277 ..      11     278 .. 0.91

  Alignments for each domain:
  == domain 1  score: 157.4 bits;  conditional E-value: 1.5e-49
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH....HHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEE CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgeka....eeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDga 97 
                  r+++ii+h D+GKtT+t+++l   +ai+ +g+++    ++++  D+++ E++rgi+i+++++++   ++++l+nl+DtPGH+dFs++++r+l ++D++
  CTQ26307.1  13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKgrgsSQHAKSDWMEMEKQRGISITTSVMQFP--YHDCLVNLLDTPGHEDFSEDTYRTLTAVDCC 109
                 689********************************887544777**********************..******************************* PP

                 EEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH........................................... CS
    GTP_EFTU  98 vlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk........................................... 153
                 ++v+da++Gve +t++++++ + +++pi +f+NK+Dr + +  e+ +ev+++l+                                             
  CTQ26307.1 110 LMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGcapitwpigcgklfkgvyhlykdetylyqtgkghtiqevrivk 208
                 *****************************************************655****************************999999999999999 PP

                 .............................HHHHHHHHHTTT..........TTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 154 .............................eeklekygekge..........kevpvvfgSalkgegvktllealvellp 193
                                                         +          +++pv+fg al ++gv+++l+ lve++p
  CTQ26307.1 209 glnnpdldaavgedlaqqlrdelelvqgaS----------NefdkdlflagEITPVFFGTALGNFGVDHMLDGLVEWAP 277
                 999999999998888877776666555552..........034444555558**********************99877 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.1   0.1   1.9e-49   3.9e-46       1     130 [.     387     514 ..     387     515 .. 0.97

  Alignments for each domain:
  == domain 1  score: 156.1 bits;  conditional E-value: 1.9e-49
                 B---EEE--SEEEEEEESSGGGHHHHHHHHHHHHHCTSSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE-SSH.HHHH CS
       RF3_C   1 FegiPsFaPElfarvrlkdplkrkqlrkgleqLaeEGavqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwvesedekkkle 99 
                 F+giP+FaPElf+r+rlkdplk+kql kgl qL+eEGavqvf++  a+++li+gaVG+LQf+Vv +Rlk+EY+ve+ +es+++ +arwves+d  kk+e
  CTQ26307.1 387 FTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPI-ANNDLIVGAVGVLQFDVVVARLKSEYNVEAIYESVNVATARWVESTDV-KKFE 483
                 99******************************************9.89*****************************************99999.57** PP

                 HHHHHCGGGEEEETTS-EEEEESSHHHHHHH CS
       RF3_C 100 elkkkseselvkdkkgrpvlLfenewelelv 130
                 e+k+k+e++l+ d  +++++++++ ++l+l+
  CTQ26307.1 484 EFKRKNEVQLALDGGDNLTYIAPTMVNLNLT 514
                 ***************************9987 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.2   1.2e-13   2.3e-10       2      74 .]     314     380 ..     313     380 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.2e-13
                  EEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   2 tvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  +va++rv+sG+ +kG+++r   ++ +k+   + is  +tf++  +  v++a+ G+i+++ +  + i++Gdt+t
   CTQ26307.1 314 RVAFMRVVSGKYEKGMKLRQ--VRIGKD---VVISDALTFMAGDRSHVEEAYPGDIIGLHNHGT-IQIGDTFT 380
                  79******************..777799...*********************************.******85 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.1e-07   0.00021       2     114 .]      16     143 ..      15     143 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.1e-07
                 EEEEESTTSSHHHHHHHHH............TSTEEESSSTTSSSSEEEEEEEETTEE.................EEEEECGGCSSHHHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt............gekaivsdkpgtTrdinegrvklkgke.................ielvDtpGliegaseekglgkafl 71 
                 +ai+ +p +GK+t+  + +            +         g  ++ +   +++++++                 ++l+DtpG  e        +++++
  CTQ26307.1  16 FAIISHPDAGKTTITEKVLlfgqaiqtagtvK-------GRGSSQHAKSDWMEMEKQRgisittsvmqfpyhdclVNLLDTPG-HE-----DFSEDTYR 101
                 588999*********99875544433333330.......334444444333332222244444444445555555********.44.....34677788 PP

                 HHHCTSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  72 aleeadlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                  l  +d  l+v+da+ +++++  ++l e+ + ++ p++  +nk
  CTQ26307.1 102 TLTAVDCCLMVIDAA-KGVEDRTRKLMEVTRLRDTPILTFMNK 143
                 77889********88.669999999999977788999888887 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.5e-07    0.0005       7      72 ..     398     462 ..     394     465 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.5e-07
      EFG_II   7 slaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykveve 72 
                 +  i+ k+  ++++l k L +l+eE   ++v r    +++i+ ++G l++++vv rlk+ey+ve+ 
  CTQ26307.1 398 FRRIRLKDPLKQKQLLKGLVQLSEEG-AVQVFRPIANNDLIVGAVGVLQFDVVVARLKSEYNVEAI 462
                 56788889999999999**9998875.7999999*****************************986 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.8e-05     0.095      33     115 ..      67     145 ..      51     161 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.8e-05
                 SEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTT CS
         Ras  33 gvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvD 115
                 g+  +t+ +++  +++ ++++DT G e+f++ +   ++ ++++l+v d   ++  e+ ++ + e++r  +  +pi+   nK D
  CTQ26307.1  67 GISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDA--AKGVEDRTRKLMEVTRLRD--TPILTFMNKLD 145
                 456667777888999******************************9654..4444444444445555444..45555555555 PP

>> Phg_2220_C  Conserved phage C-terminus (Phg_2220_C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   6.1e-05      0.12      23      57 ..     448     482 ..     444     484 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.1e-05
  Phg_2220_C  23 lIkarlkegytvedlkkVidlkvkeWlndtkmekY 57 
                 ++ arlk++y+ve +++ +++ +++W++ t+++k+
  CTQ26307.1 448 VVVARLKSEYNVEAIYESVNVATARWVESTDVKKF 482
                 688****************************9987 PP

>> LptE  Lipopolysaccharide-assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00013      0.26       9      56 ..     209     262 ..     201     295 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
                 S.STT...SHHHSHHHHHHHHHHH..CHTTEEEES..-SSEEEEEEEEEE......T CS
        LptE   9 fenes..eprlgqeltnaLrdelarrgrlkvvdvd..adavlegeitsytl.....e 56 
                   n+   ++ +g +l+++Lrdel+     + ++++   d+ l geit +++     +
  CTQ26307.1 209 GLNNPdlDAAVGEDLAQQLRDELE---LVQGASNEfdKDLFLAGEITPVFFgtalgN 262
                 334445999***************...5555554455************97555551 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00024      0.48      52     119 ..      78     145 ..      17     146 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00024
                 TTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHH.HHCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  52 kvkkvklniWDtaGqerfrslhplylreaalailvydsrs.senlkeWlkelkkvagkspvilvgnkiD 119
                   +++ +n+ Dt G+e+f++ +   l++ +++++v+d+ +  e+  + l e+++  +++p++  +nk+D
  CTQ26307.1  78 PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKgVEDRTRKLMEVTRL-RDTPILTFMNKLD 145
                 3456899*************99999************665245666666666654.5789999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3762.82
//
Query:       CTQ26308.1  [L=206]
Description: periplasmic protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-39  132.0  17.1    1.7e-19   69.9   5.0    2.5  2  BON             BON domain
    0.00088   19.5   0.5     0.0027   18.0   0.5    1.8  1  MT0933_antitox  MT0933-like antitoxin protein
  ------ inclusion threshold ------
      0.028   14.9   1.2      0.028   14.9   1.2    3.5  4  HMA             Heavy-metal-associated domain
       0.28   10.4   3.8       0.28   10.3   3.0    1.3  1  Aerolysin       Aerolysin toxin


Domain annotation for each model (and alignments):
>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   4.2   1.9e-22   8.7e-19       1      67 [.      57     123 ..      57     125 .. 0.98
   2 !   69.9   5.0   3.7e-23   1.7e-19       2      68 ..     140     206 .]     139     206 .] 0.98

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 1.9e-22
                 EHHCCHHHHHHHHHHHCHTTGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEEE CS
         BON   1 dDaeiaakvkaalakdggldaadinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnelkv 67 
                 dD++i+a+vkaal +++++++ di+V++en vVtLsG V+s+++k +A  +a++v+GV +V ++l+v
  CTQ26308.1  57 DDSTITARVKAALIDHKDINSGDISVKTENKVVTLSGDVTSAEQKSQALSVAKEVKGVSHVNDKLTV 123
                 8****************************************************************99 PP

  == domain 2  score: 69.9 bits;  conditional E-value: 3.7e-23
                 HHCCHHHHHHHHHHHCHTTGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEEEE CS
         BON   2 DaeiaakvkaalakdggldaadinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnelkvr 68 
                 D++i+++vka+l++d+ +++ +++Ve++ G V L+GtV+s+a++e+A+eia+ v+GVk+V+n+l+v+
  CTQ26308.1 140 DTAITSEVKAKLLADDIVPSRNVKVETNAGAVHLTGTVASAAQAERAAEIAKAVSGVKSVRNDLSVK 206
                 99**************************************************************996 PP

>> MT0933_antitox  MT0933-like antitoxin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.5     6e-07    0.0027       1      30 [.      31      60 ..      31      60 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 6e-07
  MT0933_antitox  1 fDKakdlaekhedkvdqgiDKAgdavddkt 30
                    +D ak++a+ +++ vd  i K gd+ dd t
      CTQ26308.1 31 VDSAKSAASNAGEAVDNSINKVGDFMDDST 60
                    599************************987 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.2   6.2e-06     0.028       6      46 ..      55      97 ..      54     112 .. 0.86
   2 ?    0.7   0.3      0.16   7.2e+02      21      40 ..     109     123 ..     101     151 .. 0.59
   3 ?    3.0   1.2     0.032   1.4e+02      15      57 ..     146     194 ..     139     199 .. 0.73
   4 ?    0.2   0.1      0.24   1.1e+03      14      27 ..     187     200 ..     183     205 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.2e-06
         HMA  6 gmhCagCaakvekvLselpgV..esvkvdlatktvtVegdaes 46
                 m++    a+v+ +L  ++++   +++v  ++k vt +gd++s
  CTQ26308.1 55 FMDDSTITARVKAALIDHKDInsGDISVKTENKVVTLSGDVTS 97
                59999999*************8888999999999999999998 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.16
         HMA  21 selpgVesvkvdlatktvtV 40 
                 +e++gV+ v     ++++tV
  CTQ26308.1 109 KEVKGVSHV-----NDKLTV 123
                 555555433.....333333 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.032
         HMA  15 kvekvLselpgV..esvkvdlatktvtVegdaes.tkl...rkiieaie 57 
                  v+  L++ + V  ++vkv  +++ v  +g+++s +      +i +a++
  CTQ26308.1 146 EVKAKLLADDIVpsRNVKVETNAGAVHLTGTVASaAQAeraAEIAKAVS 194
                 6777777755558889999999999999997777555533355777776 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.24
         HMA  14 akvekvLselpgVe 27 
                 a + k++s++++V+
  CTQ26308.1 187 AEIAKAVSGVKSVR 200
                 66777777777764 PP

>> Aerolysin  Aerolysin toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.0   6.3e-05      0.28      85     205 ..      71     192 ..      63     200 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.3e-05
   Aerolysin  85 kPdslkyGdpvisdrkpekyisgvvrNdsdteqshkvatlsydevknw.....sktetyklsekvtiknkykfplvgetelsleleanqswaetngnse 178
                 + + +  Gd  +++ + ++++sg v  +++  q   va+    evk +       t  +k s + ++ + y  +  +  e++++l a++ + + n + e
  CTQ26308.1  71 DHKDINSGDISVKTENKVVTLSGDVTSAEQKSQALSVAK----EVKGVshvndKLTVHHKSSSETATLKGYAGDTAITSEVKAKLLADDIVPSRNVKVE 165
                 5568999*******************9999777756655....5555511122334557777777888899***999********************** PP

   Aerolysin 179 tvtlsasarklvpantkievrlkleka 205
                 t +  ++   +v+  +++e   ++ ka
  CTQ26308.1 166 TNAGAVHLTGTVASAAQAERAAEIAKA 192
                 **************9999998888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1229  (0.0685482); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1526.49
//
Query:       CTQ26309.1  [L=53]
Description: hypothetical protein CH1034_110093 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-13   50.4  23.6    2.1e-13   50.2  23.6    1.1  1  DUF1328          Protein of unknown function (DUF1328)
  ------ inclusion threshold ------
       0.09   12.4   0.6       0.09   12.4   0.6    2.0  2  DUF3149          Protein of unknown function (DUF3149)
       0.12   11.7   5.7       0.13   11.6   5.7    1.0  1  ThrE             Putative threonine/serine exporter
       0.34   11.1   4.1       0.45   10.7   4.1    1.2  1  Pox_A14          Poxvirus virion envelope protein A14
        1.7    8.7   7.7          2    8.4   7.7    1.0  1  IncE             Inclusion membrane protein E
        1.9    8.9   7.3        9.3    6.7   0.5    2.1  2  FeoB_associated  FeoB-associated Cys-rich membrane protein
        2.9    8.0  12.1        3.9    7.5  12.1    1.1  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
        3.8    7.4   7.7        4.7    7.1   7.7    1.1  1  DUF2721          Protein of unknown function (DUF2721)
        9.2    6.3   5.6         10    6.1   5.6    1.0  1  DUF1676          Protein of unknown function (DUF1676)


Domain annotation for each model (and alignments):
>> DUF1328  Protein of unknown function (DUF1328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2  23.6   1.1e-16   2.1e-13       1      39 []       6      44 ..       6      44 .. 0.99

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1.1e-16
     DUF1328  1 liFLviAliAgvLGFgGiagaaagiAkiLFfiFlvlfvi 39
                +iFLviAliA++LGFgG+ag+aag Aki+F+++++lf++
  CTQ26309.1  6 IIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLV 44
                8************************************98 PP

>> DUF3149  Protein of unknown function (DUF3149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.1      0.49   9.7e+02      16      25 ..       6      15 ..       5      21 .. 0.60
   2 ?   12.4   0.6   4.5e-05      0.09      17      33 ..      33      49 ..      31      52 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.49
     DUF3149 16 VIvftigmga 25
                +I+++i ++a
  CTQ26309.1  6 IIFLVIALIA 15
                4666665555 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 4.5e-05
     DUF3149 17 IvftigmgaffiryFir 33
                Ivf++g+++f +++F +
  CTQ26309.1 33 IVFVVGIILFLVSLFTG 49
                9**************65 PP

>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.7   6.3e-05      0.13     106     154 ..       4      52 ..       2      53 .] 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.3e-05
        ThrE 106 yprwlvvlaaglaaaafallfggdwidflvaflagllggllrlllakrg 154
                 ++ ++ v+a + aa +f+ l+g    ++ ++f++g++++l++l++ +r+
  CTQ26309.1   4 WGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLVSLFTGRRR 52 
                 567889999999*******************************998875 PP

>> Pox_A14  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.1   0.00023      0.45      17      61 ..       4      44 ..       1      51 [. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
     Pox_A14 17 aGiiLLilacifafvdfskststtdkawralsivsFilgivillg 61
                 Gii L++a+i a + f     t+      ++ + F++gi++ l 
  CTQ26309.1  4 WGIIFLVIALIAAALGFGGLAGTAA----GAAKIVFVVGIILFLV 44
                7****************99888654....5667778888887654 PP

>> IncE  Inclusion membrane protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   7.7     0.001         2      47      86 ..       6      46 ..       3      49 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.001
                XXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX CS
        IncE 47 iiclalgiaaaavgvs.csgfaiglgviaillgivlfaisa 86
                ii l + + aaa+g    +g a g   i  ++gi+lf +s 
  CTQ26309.1  6 IIFLVIALIAAALGFGgLAGTAAGAAKIVFVVGIILFLVSL 46
                899999999****986269******************9985 PP

>> FeoB_associated  FeoB-associated Cys-rich membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.3    0.0065        13       4      16 ..       6      18 ..       3      29 .. 0.69
   2 ?    6.7   0.5    0.0047       9.3       3      19 ..      35      51 ..      31      52 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0065
  FeoB_associated  4 IVgliiaaavafv 16
                     I+ l+ia+++a++
       CTQ26309.1  6 IIFLVIALIAAAL 18
                     6666666655544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0047
  FeoB_associated  3 iIVgliiaaavafvirr 19
                     ++Vg+i++++ +f  rr
       CTQ26309.1 35 FVVGIILFLVSLFTGRR 51
                     69********9999887 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  12.1     0.002       3.9      37      90 ..       6      52 ..       2      52 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.002
  Phage_holin_3_6 37 agllgaagvlallalllllvalalalaalwlaalivaavllvlagvlalvglkk 90
                     +++l++a++ a+l+++ l  +       ++ aa iv++v ++l +v ++ g+++
       CTQ26309.1  6 IIFLVIALIAAALGFGGLAGT-------AAGAAKIVFVVGIILFLVSLFTGRRR 52
                     333333333333333333333.......66677899999999999999999985 PP

>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   7.7    0.0024       4.7      68     114 ..       7      47 ..       1      49 [. 0.68

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0024
     DUF2721  68 lllvlsallvvlvvlllflsallsldlsllaailfvlalllllvsll 114
                 ++     l+++l+ ++l ++ l     + +a+i+fv++++l+lvsl+
  CTQ26309.1   7 IF-----LVIALIAAALGFGGLA-GTAAGAAKIVFVVGIILFLVSLF 47 
                 44.....4444555555554443.47889999***********9996 PP

>> DUF1676  Protein of unknown function (DUF1676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.6    0.0052        10     127     167 ..       6      47 ..       2      51 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0052
     DUF1676 127 plllalklklklLlplalgllallagKALllgklaL.llsai 167
                 ++ l+++l +++L++ +l++ a  a+K  ++  + L l+s +
  CTQ26309.1   6 IIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILfLVSLF 47 
                 677888999******************988765555055554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1028  (0.0573373); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 417.87
//
Query:       CTQ26310.1  [L=357]
Description: putative esterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-20   72.5   1.1      1e-18   68.2   1.1    2.3  1  Patatin   Patatin-like phospholipase
  ------ inclusion threshold ------
        0.1   11.4   0.0       0.14   10.9   0.0    1.1  1  DUF1073   Protein of unknown function (DUF1073)


Domain annotation for each model (and alignments):
>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   1.1   1.2e-22     1e-18       1     203 [.      27     195 ..      27     196 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 1.2e-22
     Patatin   1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdaealr 99 
                 Lv +GGG rg+f++g+l +++ + +  fd++ GtSaGA + +++ +++   a +   r ++++++fd           +++r ++l++ ++l +a++ +
  CTQ26310.1  27 LVCEGGGQRGIFTAGVLDEFMRAGFNPFDLMLGTSAGAQNLSAYMCNQQGYARKVITRYTTSRQFFDPM---------RFVRGGNLIDLDWLVEATSQQ 116
                 899****************88************************************************.........9******************** PP

     Patatin 100 ellrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSsafPglf.ppvsldgelyvDGGilsN 197
                  +l+   a+ ++   ++   ++                            +++  +++  ++    +d +raSsa+Pg++ + v ldg  y+DGG+++ 
  CTQ26310.1 117 MPLAMNYAEAQFALGKELWLCA--------------------------CRGDDYSASYFSPTPQTWLDLIRASSAIPGFYrSGVLLDGVSYLDGGVSDA 189
                 ****999999999999999999..........................67899999999999******************999**************** PP

     Patatin 198 vPilaa 203
                 +P+++a
  CTQ26310.1 190 IPVQEA 195
                 ***987 PP

>> DUF1073  Protein of unknown function (DUF1073)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.6e-05      0.14     153     194 ..     214     255 ..     193     257 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.6e-05
     DUF1073 153 kelpdmlkpaenfwGeSvlqslldavkrfdraaasvaqller 194
                    p++ k  e++ GeS lq l + v+  +++++ ++q +e+
  CTQ26310.1 214 FYTPQWFKRMERWLGESSLQPLVNLVHHHETTYRAIQQFIEK 255
                 55799*********************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2618.91
//
Query:       CTQ26311.1  [L=264]
Description: putative DNase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-68  228.5   0.0    9.6e-68  228.3   0.0    1.0  1  TatD_DNase  TatD related DNase
  ------ inclusion threshold ------
          2    9.4   9.1        1.5    9.8   0.1    4.0  4  TPR_14      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.3   0.0   1.1e-71   9.6e-68       1     255 []       6     257 ..       6     257 .. 0.98

  Alignments for each domain:
  == domain 1  score: 228.3 bits;  conditional E-value: 1.1e-71
                 EEEEE-TTSCCCTTTHHHHHHHHHHTTEEEEEEE-SSGGGHHHHHHHHTT.TTTEEEEE---GGGGGCC.CCHHHHHHHHHHCCCTSEEEEEEEEEET- CS
  TatD_DNase   1 iDaHcHldskefeedreeileraeeagvaavvvvgtsskdskavlelakkypnkvyavlGiHPnevdeasedlleelkelanvkhskvvaiGeiGLDyy 99 
                 iD+HcH+d++ f++d+ + l+ra++agv++++v+ +s +++++vl+la++++  +ya+lG+HP  ++e++++ l++l+ l   + +k va+GeiGLD+ 
  CTQ26311.1   6 IDTHCHFDFPPFAADEVASLARAAQAGVGRIIVPAISAERFSRVLALAAQHEA-LYAALGMHPIVIEEHTDEGLAQLEALMAQRPPKLVAVGEIGLDL- 102
                 8*************************************************998.**************************778999************. PP

                 CCCCCGHHHHHHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHHHHCGGCCSEEEETT--S-HHHHHHHHHTTEEEEE-GGGGTTTTHHHHHHHHHS-GG CS
  TatD_DNase 100 sreestkeaqeevFeeqlrlAkelklplviHlrkaeedlleilkeaaeakakvvlHsfsgsaeeakkflklgyyislsglltfknakelrelvkavpld 198
                 +r++ + ++q++++e+qlrlAk+++lp+++H+r+++++l  +lk+ a ++ ++v+H f gs ++a++f++lgy i+++g++t+ +a+++re+++++pl+
  CTQ26311.1 103 YRDDPQFDRQQALLEAQLRLAKRYDLPVILHSRRTHDKLAMLLKKHALPR-TGVIHGFAGSLQQAERFVQLGYKIGVGGTITYPRASKTREVMARLPLS 200
                 8999*******************************************888.9*********************************************** PP

                 GEEE---TTSSEECCCTTSE--GGGHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  TatD_DNase 199 rlLiETDaPyltpkpyrgkrnepanvayvveklaelkaltleelaeitaeNakrlfk 255
                  lL+ETDaP++  + ++g++n+p++ a+v+e+l+el+ ++++ ++e + +N+++lf+
  CTQ26311.1 201 ALLLETDAPDMPLNGFQGQPNRPEQAARVFEALCELRPESPAAIEEGIMHNTLALFS 257
                 *******************************************************95 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.17   1.5e+03      22      42 ..      44      64 ..      21      66 .. 0.79
   2 ?   -1.0   0.0      0.52   4.6e+03      17      32 ..      74      89 ..      69      95 .. 0.77
   3 ?    1.4   0.2     0.086   7.7e+02      10      33 ..     102     125 ..      99     133 .. 0.77
   4 ?    9.8   0.1   0.00017       1.5      16      37 ..     222     243 ..     217     246 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.17
      TPR_14 22 allrralalaPddaeawllla 42
                + + r+lala ++++++ +l+
  CTQ26311.1 44 ERFSRVLALAAQHEALYAALG 64
                557788888888888877775 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.52
      TPR_14 17 pdeAiallrralalaP 32
                +de +a l+++ a+ P
  CTQ26311.1 74 TDEGLAQLEALMAQRP 89
                6888888888877765 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.086
      TPR_14  10 allalGdpdeAiallrralalaPd 33 
                 +++   ++d+  all++ l+la  
  CTQ26311.1 102 LYRDDPQFDRQQALLEAQLRLAKR 125
                 577778889889999999888764 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00017
      TPR_14  16 dpdeAiallrralalaPddaea 37 
                 +p++A+++++++++l P++++a
  CTQ26311.1 222 RPEQAARVFEALCELRPESPAA 243
                 79*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2039.45
//
Query:       CTQ26312.1  [L=425]
Description: putative sodium/proton nucleoside transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-80  269.3   5.9    2.4e-80  269.3   5.9    2.6  3  Nucleos_tra2_C  Na+ dependent nucleoside transporter C-termin
    1.4e-22   80.1   5.5    1.4e-22   80.1   5.5    3.7  4  Nucleos_tra2_N  Na+ dependent nucleoside transporter N-termin
    3.8e-08   33.6  14.9    5.4e-08   33.1   5.6    2.8  2  Gate            Nucleoside recognition
  ------ inclusion threshold ------
       0.02   14.9   2.1        4.8    7.3   0.6    2.9  2  Herpes_UL49_5   Herpesvirus UL49.5 envelope/tegument protein


Domain annotation for each model (and alignments):
>> Nucleos_tra2_C  Na+ dependent nucleoside transporter C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.9      0.48   2.2e+03      64      98 ..       4      37 ..       1      50 [. 0.62
   2 ?   -1.0   0.2       0.3   1.3e+03      57      90 ..      39      76 ..      20      89 .. 0.70
   3 !  269.3   5.9   5.3e-84   2.4e-80       1     207 []     201     422 ..     201     422 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.48
                    HHHHHHHHHHHHHHHHHHHHT-TT--HHHHHHHHH CS
  Nucleos_tra2_C 64 liafvalvalinallgwlgsgleelslelilgyvf 98
                    l++++++val+  ++ +  ++ + ++l ++lg  +
      CTQ26312.1  4 LMGLIGMVALLAIAVLLS-NNRKAINLRTVLGAWI 37
                    455555555554444333.3356788888888655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.3
                    HHHHHHHHHHH....HHHHHHHHHHHHHHHHT-TT--H CS
  Nucleos_tra2_C 57 alniaamliaf....valvalinallgwlgsgleelsl 90
                     + i+a ++ +     al+a+ n++ ++++ g+e++s+
      CTQ26312.1 39 QVGIGALILYVpagrAALLAMSNGVASVIAYGNEGISF 76
                    55566666554222268999999999999777777665 PP

  == domain 3  score: 269.3 bits;  conditional E-value: 5.3e-84
                     HHHHHHHHHHHHHHHHHHHHS---S-..............---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..T-TT-- CS
  Nucleos_tra2_C   1 yllaAsvmsapaalaiskllvPeteesktkk....keekeeekanvleaaaegaldglklalniaamliafvalvalinallgwlgs..gleels 89 
                     yl+aAs+m+ap++l+++k++vPete+++ +     ++++++++anvl+aaa+ga++g++laln++aml+af+al+al+n++l+ +g+  +++els
      CTQ26312.1 201 YLIAASFMAAPGGLLFAKIIVPETEKPDDNPahdsQSADADKPANVLDAAASGAASGMQLALNVGAMLLAFIALIALLNGILSGVGGwfNHPELS 295
                     9***********************9765555777688888899******************************************998889**** PP

                     HHHHHHHHHHHHHHHTT--GGGHHHHHHHHHHHHHT-HHHHHHHHGGGGS.........SS---HHHHHHHHHHH-S--STHHHHHHHHHHHHH- CS
  Nucleos_tra2_C  90 lelilgyvfaplafllGvpwedalkvgsllGtKlvlnefvayqeLsklkk.........kgelserseliatyaLcgFanfssigiqiGglgala 175
                     l++ilg++f+pla+++Gvpw++a+ +gs++G+Kl++nefvay++++++ k          + +s+++++i+++aLcgFan+ssi+i+iGglg++a
      CTQ26312.1 296 LQMILGWIFSPLAWVIGVPWHEATVAGSFIGQKLIINEFVAYMNFGEYLKadaevaaagLQVISDHTKAIISFALCGFANLSSIAILIGGLGGMA 390
                     ************************************************999*****999999********************************* PP

                     GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
  Nucleos_tra2_C 176 perrkdiaklglkallaGtlasllsAaiaGll 207
                     p+rr+dia+lgl+a++aGtl++l+sA+iaG++
      CTQ26312.1 391 PNRRQDIAQLGLRAVAAGTLSNLMSATIAGVF 422
                     ******************************97 PP

>> Nucleos_tra2_N  Na+ dependent nucleoside transporter N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   5.5   3.1e-26   1.4e-22       1      74 []       8      81 ..       8      81 .. 0.99
   2 ?   -2.7   0.2       2.2   9.8e+03      38      53 ..     114     129 ..      95     140 .. 0.50
   3 ?   -2.7   0.3       2.1   9.3e+03      35      46 ..     264     275 ..     245     289 .. 0.58
   4 ?   -0.7   0.1      0.49   2.2e+03      29      44 ..     294     309 ..     293     326 .. 0.80

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 3.1e-26
                    HHHHHHHHHHHHT-S-GGG--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG CS
  Nucleos_tra2_N  1 lGllvllliawllSenrkainwrtVigglllQfvlAlfvlktpagrdvfkalsdlvqalldfakaGasFvFGsl 74
                    +G+++ll+ia+llS+nrkain+rtV+g+ ++Q+ +++++l++pagr+++ a+s++v+++++++++G+sF+FG+l
      CTQ26312.1  8 IGMVALLAIAVLLSNNRKAINLRTVLGAWIIQVGIGALILYVPAGRAALLAMSNGVASVIAYGNEGISFIFGGL 81
                    7***********************************************************************97 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.2
                     HHHTSHHHHHHHHHHH CS
  Nucleos_tra2_N  38 fvlktpagrdvfkals 53 
                     ++ ++++ + v++ l+
      CTQ26312.1 114 VLYYLGIMQLVIRILG 129
                     2333444555555555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.1
                     HHHHHHTSHHHH CS
  Nucleos_tra2_N  35 lAlfvlktpagr 46 
                     +++++l + a  
      CTQ26312.1 264 VGAMLLAFIALI 275
                     344444444443 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.49
                     HHHHHHHHHHHHTSHH CS
  Nucleos_tra2_N  29 lllQfvlAlfvlktpa 44 
                     l lQ++l++++  + +
      CTQ26312.1 294 LSLQMILGWIFSPLAW 309
                     6799999998866655 PP

>> Gate  Nucleoside recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   5.6   1.2e-11   5.4e-08       2     108 ..      99     195 ..      98     198 .. 0.95
   2 !    5.0   1.8    0.0062        28       2      53 ..     262     326 ..     261     390 .. 0.69

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.2e-11
        Gate   2 lkagpiillasiliwflssssllgrigkllepvfap.lg..qeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpksalafllfvllytp 97 
                 l+++p+i+++s li +l++ ++++ + ++l+  ++  l+  + ++  at+++++g++     ++++ ++y          + +++s+l ++++++l+++
  CTQ26312.1  99 LRVLPVIVFFSSLIAVLYYLGIMQLVIRILGGALRAvLKtsRTESLSATANIFVGQT----EAPLVVRPY---------IATMTRSELFAVMCGGLASV 184
                 89**********************************777999***************....99999999*.........******************** PP

        Gate  98 cvatlavivre 108
                 ++++la ++++
  CTQ26312.1 185 AGSVLAGYAQM 195
                 ******99986 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0062
        Gate   2 lkagpiillasiliwflss.............ssllgrigkllepvfaplgqeldwkatvslltg 53 
                 l++g ++l++++li +l+               sl  ++g +++p+   +g + +  ++++ + g
  CTQ26312.1 262 LNVGAMLLAFIALIALLNGilsgvggwfnhpeLSLQMILGWIFSPLAWVIGVPWHEATVAGSFIG 326
                 67899999999999999999999*99999999899999999999998889944554555555555 PP

>> Herpes_UL49_5  Herpesvirus UL49.5 envelope/tegument protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.6    0.0011       4.8      55      94 ..     105     144 ..     102     148 .. 0.86
   2 ?    5.8   0.0    0.0031        14      47      79 ..     251     283 ..     204     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0011
  Herpes_UL49_5  55 siaessaasvlFYisLlavlvallavaynacfrlftasvl 94 
                     + +ss  +vl+Y++++  ++ +l +a +a ++  +++ l
     CTQ26312.1 105 IVFFSSLIAVLYYLGIMQLVIRILGGALRAVLKTSRTESL 144
                    5678999***********************9998777665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0031
  Herpes_UL49_5  47 aaCsarGvsiaessaasvlFYisLlavlvalla 79 
                    a+ +a G+++a   +a +l +i+L+a l ++l 
     CTQ26312.1 251 ASGAASGMQLALNVGAMLLAFIALIALLNGILS 283
                    445799********************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3004.83
//
Query:       CTQ26313.1  [L=266]
Description: 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-52  176.7   0.5    6.4e-52  176.5   0.5    1.0  1  DeoC          DeoC/LacD family aldolase
  ------ inclusion threshold ------
      0.094   12.2   0.2       0.55    9.6   0.0    2.2  3  His_biosynth  Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> DeoC  DeoC/LacD family aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.5   0.5   7.1e-56   6.4e-52       2     234 ..      18     252 ..      17     253 .. 0.96

  Alignments for each domain:
  == domain 1  score: 176.5 bits;  conditional E-value: 7.1e-56
                 EEEEECCSHHHHHHHHCTSSHHHHHHHHHHHHHHGG..GSSEEEEETTTHHHHHHCSCT......TSEEEEETECSSCCTTSTTEEEETTCHHHHHHHT CS
        DeoC   2 vilavDqrvankddtasaqneqledlkalvkealtp..gasavlldpgviasaskeyak......diallvkldkgtyllkskqrdvdevasveeakal 92 
                 +++++D++++n+ddt +       ++ al+++a+tp  +++av+++p++i++a+k++++      +ia+++++++g+++++++      +a++++a+a+
  CTQ26313.1  18 ALKLMDLTTLNDDDTNE-------KVIALCHQAKTPvgNTAAVCIYPRFIPIARKTLNEqgtpdiRIATVTNFPHGNDDIDIA------LAETRAAIAY 103
                 5789*************.......***********************************************************......********** PP

                 T-SEEEEEEEEHTTTTCHHHHHHHHHHHHHHHHH..HHTEEEEEE.EEE-CTTBSSTTCHHHHHHHHHHHHTCCT-SEEEE--SSCC.B.HHHHHHHHH CS
        DeoC  93 GAdavkvvvyyradgseeeqqklaeikrvkeach..eeglplile.lylrdeaikdekvdpdlvaeAarvsaelGaDiiKvevpkevvnateedaevfk 188
                 GAd+v+vv++yra+ +++eq  ++ +k++keac+  ++ l++i+e ++l++ea         l+++A+++s+++GaD+iK++++k+ vnat+e+a++++
  CTQ26313.1 104 GADEVDVVFPYRALIAGNEQVGFELVKACKEACAaaNVLLKVIIEtGELKEEA---------LIRKASEISIKAGADFIKTSTGKVPVNATPESARIMM 193
                 *********************************988899**************.........************************************* PP

                 HHHHCHSSTE...EEEETTS.SHHHHHHHHHHHHHHHTH.........CEEEESHHHHT CS
        DeoC 189 dvikaapvpg...vvlsGGv.seedfletvedAvkeaga.........sGvlsGRaifq 234
                 +vi+++ v++   ++++GGv s+ed ++ +  A +  ga         +G++s++a+++
  CTQ26313.1 194 EVIRDMGVEKtvgFKPAGGVrSAEDAQQFLAIADELFGAdwadsrhyrFGASSLLASLL 252
                 *********6667********999999999999965566888999999****9999876 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.28   2.5e+03      39      66 ..      12      38 ..       6      47 .. 0.72
   2 ?   -1.1   0.0      0.12   1.1e+03      98     118 ..     144     164 ..     126     183 .. 0.75
   3 ?    9.6   0.0   6.1e-05      0.55      51      94 ..     182     225 ..     179     235 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.28
                  HHHT-SEEEEEEHHHHCTTHHHHHHHHH CS
  His_biosynth 39 eeegadelhvvDldaakegreanldlve 66
                  ++  ++ l ++Dl+   +  ++n ++++
    CTQ26313.1 12 KASSLRALKLMDLTTL-NDDDTNEKVIA 38
                  5677888999999866.67788888776 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.12
                   EEEESHHHHH-THHHHHHHHH CS
  His_biosynth  98 kviigtaavknpelikelaek 118
                   kvii t  +k+  li++++e 
    CTQ26313.1 144 KVIIETGELKEEALIRKASEI 164
                   888999999999998888874 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 6.1e-05
                   HHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHC CS
  His_biosynth  51 ldaakegreanldlveeiaeevfipvqvGGGIrsledveellea 94 
                   ++a+ e+ +++ ++++ +  e ++ +   GG+rs ed+++ l +
    CTQ26313.1 182 VNATPESARIMMEVIRDMGVEKTVGFKPAGGVRSAEDAQQFLAI 225
                   689999************9999******************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1987.37
//
Query:       CTQ26314.1  [L=440]
Description: thymidine phosphorylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-53  182.0   1.3    2.5e-53  181.2   1.3    1.4  1  Glycos_transf_3  Glycosyl transferase family, a/b domain
    2.7e-25   87.8   0.2    5.1e-25   86.9   0.2    1.5  1  PYNP_C           Pyrimidine nucleoside phosphorylase C-termin
    3.9e-19   68.3   0.1    1.7e-18   66.2   0.1    2.2  1  Glycos_trans_3N  Glycosyl transferase family, helical bundle 
  ------ inclusion threshold ------
      0.097   12.6   0.0       0.27   11.1   0.0    1.7  1  LT-IIB           Type II heat-labile enterotoxin , B subunit 


Domain annotation for each model (and alignments):
>> Glycos_transf_3  Glycosyl transferase family, a/b domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.2   1.3   5.7e-57   2.5e-53       2     252 ..      79     309 ..      78     310 .. 0.99

  Alignments for each domain:
  == domain 1  score: 181.2 bits;  conditional E-value: 5.7e-57
                      TTBEEEEESS-SSSTHHHHHHHHHHHHHHTT-BEEEEE-STCTTCS-HHHHHCTS.T--ST--HHHHHHHHHHHSEEEEEHHSSSSHHHHHHHH CS
  Glycos_transf_3   2 kdlvDivgTGGdgantfNiStaaaivvAaaGvkvakhgnrsvssksGsaDvLeal.gvnleltpeeveklleevgvgflfapeyhkamkhvapv 94 
                      +++vD+++TGG+g+ t   S++++++vAa+G +v+++++r++++++G++D+Lea+ g+++  +++++++++++vgv++++++++++++++ +++
       CTQ26314.1  79 GPIVDKHSTGGVGDVT---SLMLGPMVAACGGYVPMISGRGLGHTGGTLDKLEAIpGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYA 169
                      579*************...*************************************************************************** PP

                      HHHHTT.-SSHHHCHHHHHT..SEEEEHHHHHHHHTCHSEEEEEEEESTTSSCCSTSHHHHHHHHHHHHHHHH.TTEEEEEEEEEGSSTSSSEE CS
  Glycos_transf_3  95 rrelgirTvfnlLGPLinparvkkqllgvyskelaeklaevlkelgveralvvhgdGldevsllakttvaelk.dgeiteytlepedfglkrae 187
                      +r++++ Tv+++  PLi++        ++++k+lae+l++++++++v++++++++  ++  ++la+++v  ++ +g +t++ l+++++ l++++
       CTQ26314.1 170 TRDITA-TVDSI--PLITA--------SILAKKLAEGLDALVMDVKVGSGAFMPT--YELSAALAEAIVGVANgAGVRTTALLTDMNQVLASSA 250
                      ******.*****..*****........****************************..************************************* PP

                      ESHHHHSSHHHHHHHHTTHHTSCHHHHHHHHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHTSHH CS
  Glycos_transf_3 188 lealeggepkenaeilkavlegkksaakrdlvllnagaalvlagkadslkegvakaeevidsGkA 252
                      ++a+e+   +e++++l++++++++    +d+++++++++l+  + a + +e++ak+++v+d+GkA
       CTQ26314.1 251 GNAVEV---REAVQFLTGEYRNPRL---FDVTMALCVEMLISGKLAADDAEARAKLQAVLDNGKA 309
                      ******...**********999998...7***********************************9 PP

>> PYNP_C  Pyrimidine nucleoside phosphorylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.2   1.1e-28   5.1e-25       1      74 [.     350     423 ..     350     424 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 1.1e-28
                 EEEEE-HHHHHHHHHHTTTSBSSTTS---TT-EEEES--TT-EEBTTSEEEEEEESSSCHHHHHHHHHHHHEEE CS
      PYNP_C   1 yvseidareiGlaaveLGAGRakkeDpidlavGielhkklGdkVkkGeplatiYankeekleeavkklkkaiki 74 
                 ++s++d+r++G+a+v++G+GR++++D+id++vG++ + +lGd+V+ ++pla+i+a++e++++ea+k++k+aik+
  CTQ26314.1 350 FISAMDTRALGMAVVSMGGGRRQASDTIDYSVGFTEMARLGDRVDGQRPLAVIHAKDENSWQEAAKAVKAAIKL 423
                 699********************************************************************986 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.1   3.7e-22   1.7e-18       2      63 .]       6      67 ..       5      67 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 3.7e-22
                     HHHHHHHTT.---HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHS CS
  Glycos_trans_3N  2 diikklrdgeeLtaeeirfaihgilkgevtdaqiaAfLmAlrlkGetaeEiaalaeAmresg 63
                     +ii+k+rdg+ L++eeirf+i+gi ++++++ qiaA++m +++  ++  E + l+ Amr+sg
       CTQ26314.1  6 EIIRKKRDGQALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMSMPERVSLTMAMRDSG 67
                     8***********************************************************97 PP

>> LT-IIB  Type II heat-labile enterotoxin , B subunit (LT-IIB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     6e-05      0.27      20      80 ..     318     381 ..     308     389 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6e-05
                 XXXX---HHHHHHHHTS.SSEEEEEE..EEEEEEEE-STTT-EEEEEETTS-EEEE---SSTTH CS
      LT-IIB  20 qvyagvseffkdicnrt.tadlvegv..elkkyiadvntntdgiyvvsstggvwrisrakdypd 80 
                  +  g s+f+ +  n   ta l + v  + + +i+ ++t + g+ vvs  gg  + s + dy  
  CTQ26314.1 318 AAQKGPSDFIENYANYLpTAMLSKAVyaDTEGFISAMDTRALGMAVVSMGGGRRQASDTIDYSV 381
                 45679999****99975388888887335678***********************999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3421.13
//
Query:       CTQ26315.1  [L=407]
Description: phosphopentomutase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-37  129.3   0.0    2.2e-37  128.8   0.0    1.3  1  Metalloenzyme    Metalloenzyme superfamily
  ------ inclusion threshold ------
       0.09   13.0   0.0       0.19   12.0   0.0    1.4  1  Bac_DNA_binding  Bacterial DNA-binding protein


Domain annotation for each model (and alignments):
>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.8   0.0   2.5e-41   2.2e-37       1     247 [.       2     398 ..       2     399 .. 0.90

  Alignments for each domain:
  == domain 1  score: 128.8 bits;  conditional E-value: 2.5e-41
                    -EEEEEEETTBB----......GGGTT...HHHS-................-HHHHHH.........HHH........SEEEEEESSSTT----HH CS
                    xxxxxxxxxxxxxxxx......xxxxx...xxxxx................xxxxxxx.........xxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme   1 kkvvlvvlDGlGeapa......delna...ihvAk................tPtldkL.........kkeaPerw.likahgtavglpeddmgnse 61 
                    k+++++vlD++G++++       +++a   +h+A+                +P+l +L         + ++ + +    + + a++++++ +++++
     CTQ26315.1   2 KRAFIMVLDSFGIGATedadrfGDVGAdtlGHIAEacakgeadhgrkgplnLPNLTRLglvkahegsTGKIAAGMdGNAEVIGAYAWAHELSSGKD 97 
                    6899************5555554444499999999*******************************966666778889999*************** PP

                    ..HHHHHH........................................................................................ CS
                    ..xxxxxx........................................................................................ RF
  Metalloenzyme  62 ..vgHlel........................................................................................ 67 
                      +gH+e+                                                                                        
     CTQ26315.1  98 tpSGHWEIagvpvlfdwgyfsdqensfpqelldklvkranlpgylgnchssgtvildqlgeehmktgkpifytsadsvfqiacheetfgldklyel 193
                    999********************************************************************************************* PP

                    .....................................HHHHTT-----EEEEEEEE-S---SSHHHHHT--EEEE--SHHSTT--HHHHHHHHHHH CS
                    .....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme  68 .....................................lrisetvkfahvtffwnggrsgyfnpleereeipsdtvitfdlqpemkavevaekalda 126
                                                           ++ +   + v+      ++g++ ++ +  +i ++++it +++ ++   +++++++++
     CTQ26315.1 194 ceiareelteggynigrviarpfvgdkagnfqrtgnrHDLAVEPPAPTVLQKLVDEKNGHVVSVGKIADIYANCGITKKVK-ATGLDALFDATIKE 288
                    ************999999999999999999999996622333344445555566677778888888899999999999996.678899******** PP

                    H.CC.-S..EEEEEE-HHHHH.HHTT-HHHHHHHHHHHHHHHHHHHTTS-TTTEEEEEE-SSB--TTTSS........-----EEEEEESTT---- CS
                    xxxxxxx..xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 127 ilsgkfd..lvvvniknaDmv.GHtgdleatiaaieaaDeavkeildaieqvdgilvvtADHgnaedmvkrdkqplTsHtlepVPilivgkglapd 219
                    + +++ d  +v++n++++D+  GH++d+++++a++e +D++++e+++ + ++d il++tADHg+++++++      T+Ht+e++P+l++g++++p 
     CTQ26315.1 289 M-KEAGDetIVFTNFVDFDSSwGHRRDVAGYAAGLELFDRRLPELMELVGEDD-ILILTADHGCDPTWTG------TDHTREHIPVLVYGPKVKP- 375
                    *.6667778******************************************99.****************......******************9. PP

                    S--SSHHHHTT-TTEEEEGGGHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 220 kvkegakfrekggLanvaatllnllgle 247
                        g  + +++++a++++t+++++g++
     CTQ26315.1 376 ----G-SLGHRETFADIGQTIAKYFGTS 398
                    ....3.44569*************9975 PP

>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.1e-05      0.19       7      51 ..     260     306 ..     260     315 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
                      HHHHHTT----HHHHHHHHHHHHHHHHHHHHTT-E..EEETTTEEEE CS
  Bac_DNA_binding   7 ieeiaektgltkkdakrvveafldtikeaLkkgek..velsgFGtfk 51 
                      i+ i+++ g+tkk  ++ ++a++d++++++k++++  + +++F  f 
       CTQ26315.1 260 IADIYANCGITKKVKATGLDALFDATIKEMKEAGDetIVFTNFVDFD 306
                      678999************************77665579*****9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3249.76
//
Query:       CTQ26316.1  [L=239]
Description: purine-nucleoside phosphorylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-41  139.7   1.8      1e-40  139.5   1.8    1.0  1  PNP_UDP_1  Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.5   1.8   5.7e-45     1e-40       1     214 [.      15     218 ..      15     234 .. 0.90

  Alignments for each domain:
  == domain 1  score: 139.5 bits;  conditional E-value: 5.7e-45
                 CEEEEESSHHHHHHHHHHEEEEEEEEEE.TTEEEEEEEETTEEEEEEE--SSHHHHHHHHHHHHHHHC--SEEEEEEEEEESSTTT-TT-EEEEEEEEE CS
   PNP_UDP_1   1 kiaiivgspgevellaespleetpfgregrgfkfvtGtlkgkpvvivstGiGkpnaavvaeirllkefgvkaiiriGtaGglnpdlkvGDvvipddain 99 
                 +++++ g+p +++ +ae++le++++ ++ rg   +tGt+kg+++++  +G+G p+ + + + +l+ +fgvk+iir+G++G++++d+k+ Dvvi   a+ 
  CTQ26316.1  15 DVVLMPGDPLRAKHIAETFLEDVREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCS-IYTKELITDFGVKKIIRVGSCGAVREDVKLRDVVIGMGACT 112
                 5899*****************************************************.***************************************99 PP

                 SSSCCGCCTHHCCTCCCCTTSSEE--HHHHHHHHHCHHTTTTTEEEEEEEEESESS-CHHHHHHHHHHTC-CEEESSHHHHHHHHHHTT--EEEEEEEE CS
   PNP_UDP_1 100 fdgrsplygpkeegqyfpdsydapadpelrallkeaaealgikvhrGvvatadgfyaeteaelrllrrlgadaveMEtaavaqlArelgipfaairvvs 198
                 ++  ++l++         + ++a ad  +++ ++ aa+alg++ ++G + +ad fy   +     ++++g+  veME+a ++ +A+e+g+++++i++vs
  CTQ26316.1 113 DSKVNRLRF-------KDHDFAAIADFGMVRNAVDAAKALGVDARVGNIFSADLFYTPDPSMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVS 204
                 999999866.......45667777*************************************************************************** PP

                 ETTTBETTCTCH.HCC CS
   PNP_UDP_1 199 dlaaggadaeatheev 214
                 d++    +++ t +e 
  CTQ26316.1 205 DHIRT--HEQTTAAER 218
                 *7666..222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1796.55
//
Query:       CTQ26317.1  [L=338]
Description: lipoate-protein ligase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-19   67.9   0.0    4.1e-18   65.1   0.0    2.0  2  Lip_prot_lig_C  Bacterial lipoate protein ligase C-terminus
    1.3e-08   34.8   0.0    2.4e-08   33.9   0.0    1.4  1  BPL_LplA_LipB   Biotin/lipoate A/B protein ligase family


Domain annotation for each model (and alignments):
>> Lip_prot_lig_C  Bacterial lipoate protein ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.077   6.9e+02      53      85 .]     171     204 ..     150     221 .. 0.59
   2 !   65.1   0.0   4.6e-22   4.1e-18       2      85 .]     250     333 ..     249     333 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.077
                     SBSSHHHHHHHHHTSC.HHHHCCTHHHHHHHHHH CS
  Lip_prot_lig_C  53 vkyekeaieealekid.lseyfggieleellell 85 
                     +k++++ i+++  ++  l e ++gi+ ++++e +
      CTQ26317.1 171 KKLQAKGIASVRGRVAnLVELLPGITHQQVCEAI 204
                     5555555555555444355555566666655543 PP

  == domain 2  score: 65.1 bits;  conditional E-value: 4.6e-22
                     -EESEEEEEEETTEEEEEEEEEETTEEEEEEEEESBSSSSHCHHHHHHHTTSBSSHHHHHHHHHTSCHHHHCC..THHHHHHHHHH CS
  Lip_prot_lig_C   2 pefnvkkkkrfdwGtvevrldvekgiIkdikiyGDffgpkdieeleekLigvkyekeaieealekidlseyfg..gieleellell 85 
                     p+f++ +++rf wG+ve+++dvekg+I++++ ++D+++p ++e+l+++L+g++y++e +++ +e +     f+  ++el+el  ++
      CTQ26317.1 250 PAFSHLLDERFRWGGVELHFDVEKGHITRAQAFTDSLNPAPLEALAARLVGCQYRAEVLQQQCEALV--GDFPeqEAELKELSAWI 333
                     99**************************************************************865..44444788999998886 PP

>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   2.7e-12   2.4e-08      12     131 .]      52     158 ..      45     158 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 2.7e-12
                    HH..GCGGG--TT-EEEEEEESS-B-B--B-TTSEEEEEEEEESS...-CCGTHHHHHHHHHHHHHHH......HHTT-TTEEEETTTEEEE.... CS
  BPL_LplA_LipB  12 lkeslnsselesgglvvvrrqtgGrnvwhspkgeltyslllspeqktfqnrvlelyvsllvlavlealgyrdskpgiegipvfikwpnDlyv.... 103
                     +++ n +  e + ++++rr +gG +v+h+     ++++++++ +++++    + + + +vla+l++l          g+ +++ ++nDl+v    
     CTQ26317.1  52 PWKECNTRRMEEDHVRLARRSSGGGAVFHD---LGNTCFTFMAGKPEYD----KTVSTAIVLAALNTL----------GVTAEASGRNDLVVktds 130
                    4688999999********************...6667777777775666....999************..........77788779********** PP

                    TTEEEEEEEEEEEETTS-EEEEEEEEEE CS
  BPL_LplA_LipB 104 ngrKlaGiavtstrgktlhhivigvgvn 131
                    ++rK++G+a + t  +  hh++++++ +
     CTQ26317.1 131 GDRKVSGSAYRETMDRGFHHGTLLLNAD 158
                    *********************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2723.45
//
Query:       CTQ26318.1  [L=215]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-65  218.0   0.1    7.4e-65  217.5   0.1    1.3  1  SMP_2         Bacterial virulence factor haemolysin
     0.0014   18.9   0.0     0.0027   17.9   0.0    1.6  1  CHASE8        Periplasmic sensor domain
  ------ inclusion threshold ------
      0.013   15.7   0.6       0.27   11.5   0.0    2.3  2  TetR_C_16     Tetracyclin repressor-like, C-terminal domain
      0.058   12.8   0.0       0.08   12.3   0.0    1.2  1  Beta_protein  Beta protein
      0.077   13.3   0.1       0.14   12.5   0.1    1.3  1  DUF4508       Domain of unknown function (DUF4508)
      0.093   12.6   0.4       0.18   11.7   0.4    1.4  1  DUF412        Protein of unknown function, DUF412
       0.13   12.2   0.3       0.39   10.7   0.1    1.8  2  DUF3290       Protein of unknown function (DUF3290)
       0.23   11.3   2.1        2.7    7.8   0.3    2.1  2  DUF2157       Predicted membrane protein (DUF2157)
       0.45   10.4   2.0       0.34   10.8   0.4    1.6  2  LEAP-2        Liver-expressed antimicrobial peptide 2 precurs


Domain annotation for each model (and alignments):
>> SMP_2  Bacterial virulence factor haemolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.5   0.1   3.7e-68   7.4e-65       1     159 []       1     160 [.       1     160 [. 0.99

  Alignments for each domain:
  == domain 1  score: 217.5 bits;  conditional E-value: 3.7e-68
       SMP_2   1 mvkeklkfrllltvivllclallvvllqgasqfslgsqlarvnQveeLsklLvrQvanslskllvdnak.eeklkelldqltkeslvlDAsvYskdGel 98 
                 mv++klkfrl+++vivl+clallv+l+qgas+fs++sq++r+ Q+eeL+++L++Qv  +l++l+++++  e+++++ll qlt++s+vlDA vY+++G l
  CTQ26318.1   1 MVRAKLKFRLHRAVIVLICLALLVALMQGASWFSQNSQKQRNPQLEELARTLAQQVVLNLAPLMRSETPdEKRINQLLTQLTHNSRVLDAGVYDEQGDL 99 
                 89*****************************************************************9989**************************** PP

       SMP_2  99 lAqseealelrdrlaldgkkagssfnqQiVepieskdgliGFlRvtldtkvlqteakkvdn 159
                 +A+s+e++e+rdrlaldgkkag +fnqQiVep+ +k+g+ G+lR+tldt++l+teak+vdn
  CTQ26318.1 100 VARSGESVEVRDRLALDGKKAGGYFNQQIVEPVPGKNGPLGYLRLTLDTHTLATEAKQVDN 160
                 ***********************************************************97 PP

>> CHASE8  Periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.4e-06    0.0027      27     101 ..      69     144 ..      37     145 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.4e-06
      CHASE8  27 eDaaaAreiLaaLkaepeiaaaavydaegkllaeyaresseak.eeleallaslllpepvespilhdgeriGtvvl 101
                  D++  +++L +L+++  +  a vyd++g l a+  +  + ++   l+   a   +++++ +p+  ++  +G+++l
  CTQ26318.1  69 PDEKRINQLLTQLTHNSRVLDAGVYDEQGDLVARSGESVEVRDrLALDGKKAGGYFNQQIVEPVPGKNGPLGYLRL 144
                 499******************************7544444444566777777777777777788777777777776 PP

>> TetR_C_16  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1       0.1     2e+02      36      72 ..      44      81 ..      36      82 .. 0.74
   2 ?   11.5   0.0   0.00014      0.27      40      83 ..     142     185 ..     123     190 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.1
                --HHHHHHHHHHHHHHCTTTS-ST.THHHHHHHHHHHH CS
   TetR_C_16 36 aaellrefleeqvlaplaarlggp.daelRaalvasql 72
                + e l + l++qv+ +la  +  +   e R++ +++ql
  CTQ26318.1 44 QLEELARTLAQQVVLNLAPLMRSEtPDEKRINQLLTQL 81
                45677788888888888888888866677877777776 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHHCTTTS-STTHHHHHHHHHHHHHHHHHHHHTS- CS
   TetR_C_16  40 lrefleeqvlaplaarlggpdaelRaalvasqllGlalaRyvlr 83 
                 lr  l ++ la+ a+++++++  lR  l++s+ +G++l+R +l+
  CTQ26318.1 142 LRLTLDTHTLATEAKQVDNTTNILRLMLLLSLAIGVVLTRTLLQ 185
                 7788899999999***************************9986 PP

>> Beta_protein  Beta protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     4e-05      0.08      75     123 ..      37      86 ..      22     110 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4e-05
  Beta_protein  75 ltedgrevleellellsee.gldiiPviqldrddsarlravkkqierrdk 123
                    +++ ++ leel+++l ++  l++ P  +++++d++r++++ +q+ ++++
    CTQ26318.1  37 SQKQRNPQLEELARTLAQQvVLNLAPLMRSETPDEKRINQLLTQLTHNSR 86 
                   44568999*************************************99554 PP

>> DUF4508  Domain of unknown function (DUF4508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.8e-05      0.14       9      53 ..      31      75 ..      26      86 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.8e-05
     DUF4508  9 qWfkewselqredFlevlveklvkkkvnglldsleslevqdkpls 53
                +Wf++ s+ qr+  le+l+++l+++ v +l+  + s + ++k+++
  CTQ26318.1 31 SWFSQNSQKQRNPQLEELARTLAQQVVLNLAPLMRSETPDEKRIN 75
                8************************99999999988877777665 PP

>> DUF412  Protein of unknown function, DUF412
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   9.3e-05      0.18      63     130 ..      14      80 ..       3      89 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.3e-05
      DUF412  63 qailtalfllsLPlQGlywlGkraktpLppslaswykeikeklkeqgaalaaakekptyqdLaelLkk 130
                 + +l+ l ll   +QG  w+ + ++++ +p+l +  +++ +++  + a l   +e+p+ + + +lL +
  CTQ26318.1  14 VIVLICLALLVALMQGASWFSQNSQKQRNPQLEELARTLAQQVVLNLAPL-MRSETPDEKRINQLLTQ 80 
                 34555566666679****************************99886655.44556776777776654 PP

>> DUF3290  Protein of unknown function (DUF3290)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1    0.0002      0.39      38      92 ..       2      56 ..       1      73 [. 0.87
   2 ?   -1.2   0.0       0.9   1.8e+03      13      32 ..     160     179 ..     153     193 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
     DUF3290 38 lrnrldtkyRdLsiilllllllllgiqysdyqqsqsassqssqmvsfiksvAkek 92
                +r +l+ +    +i+l+ l+ll++ +q  ++ +++s++++  q+ ++ +++A++ 
  CTQ26318.1  2 VRAKLKFRLHRAVIVLICLALLVALMQGASWFSQNSQKQRNPQLEELARTLAQQV 56
                67888888888899999999***********************999999999986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.9
     DUF3290  13 slndllryililvllllliv 32 
                 +++++lr++l+l l++ +++
  CTQ26318.1 160 NTTNILRLMLLLSLAIGVVL 179
                 44555555555544444333 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.3    0.0014       2.7      61     107 ..      10      58 ..       4      66 .. 0.79
   2 ?    3.2   0.1     0.035        69      61      88 ..     161     189 ..     154     201 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0014
     DUF2157  61 lsrlvkfllllvllllslllg.avlwrdr.rvpprlgeallllaalllg 107
                 l+r+v +l++l+ll++ + ++ ++ ++ + +++p l e++ +la  +++
  CTQ26318.1  10 LHRAVIVLICLALLVALMQGAsWFSQNSQkQRNPQLEELARTLAQQVVL 58 
                 7888889999999999999987766554479999999999999887766 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.035
     DUF2157  61 lsrlvkfllllvllllslllg.avlwrdr 88 
                  ++ ++++lll+l+++++l+  +++++++
  CTQ26318.1 161 TTNILRLMLLLSLAIGVVLTRtLLQGKRT 189
                 57789999999999999988844444433 PP

>> LEAP-2  Liver-expressed antimicrobial peptide 2 precursor (LEAP-2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   0.00017      0.34       8      43 ..      14      50 ..       7      67 .. 0.82
   2 ?   -3.0   0.1       3.4   6.8e+03       9      27 ..     167     185 ..     163     196 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
      LEAP-2  8 avllvcl.lllsqvdssplpqqssakrrlrrmtPfwr 43
                 ++l+cl ll++ +++++   q+s+k+r+ ++  + r
  CTQ26318.1 14 VIVLICLaLLVALMQGASWFSQNSQKQRNPQLEELAR 50
                578899758899********99999999877665555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.4
      LEAP-2   9 vllvcllllsqvdssplpq 27 
                 ++l+ +l +  v + +l q
  CTQ26318.1 167 LMLLLSLAIGVVLTRTLLQ 185
                 4444455554444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 1823.19
//
Query:       CTQ26319.1  [L=323]
Description: 3-phosphoserine phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-21   75.4   0.0    4.9e-21   74.3   0.0    1.6  1  DUF5609          Domain of unknown function (DUF5609)
      3e-18   66.9   0.1    6.5e-18   65.8   0.1    1.6  2  HAD              haloacid dehalogenase-like hydrolase
    7.2e-18   65.6   0.9    1.6e-17   64.5   0.9    1.5  1  Hydrolase        haloacid dehalogenase-like hydrolase
    1.7e-14   54.2   0.0    5.5e-13   49.2   0.1    2.2  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
    0.00025   20.5   0.0     0.0025   17.3   0.0    2.0  2  Put_Phosphatase  Putative Phosphatase
     0.0015   18.2   0.1     0.0038   16.8   0.0    1.6  2  S6PP             Sucrose-6F-phosphate phosphohydrolase
  ------ inclusion threshold ------
      0.023   14.8   0.0       0.15   12.1   0.0    2.0  1  HAD_2            Haloacid dehalogenase-like hydrolase
       0.12   12.4   0.1       0.99    9.4   0.0    2.1  2  BetR             BetR domain


Domain annotation for each model (and alignments):
>> DUF5609  Domain of unknown function (DUF5609)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   2.2e-24   4.9e-21       1      64 [.      37     100 ..      37     101 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 2.2e-24
     DUF5609   1 rkaswlvYgrsltkdkleqlqeklgealdivaaWkVgsYdVlllageltaqleqaveelklDva 64 
                 ++++wl+Ygr+l+k++l++ q  lg+al+iva+W V++Y+V++lag+lt +++++++e++lDva
  CTQ26319.1  37 GRSGWLLYGRGLDKRRLTAWQRELGAALVIVASWVVEDYQVIRLAGSLTPRATRLAHEAGLDVA 100
                 589************************************************************9 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.1   2.9e-21   6.5e-18      37     187 ..     144     281 ..     114     282 .. 0.77
   2 ?   -3.2   0.0       4.2   9.4e+03      80     111 ..     291     320 ..     285     321 .. 0.74

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 2.9e-21
         HAD  37 klllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevd 135
                  ++ a+   +++ld  +  ++  a+l++ ++ +  ++++++     p l+ pg+ +l+ +    G++v++ Sgg+ +++e l ++l  d+v a+ele +
  CTQ26319.1 144 VTERAM---RGELDFTASLRQRVATLKDADASILLQVRDAL-----P-LM-PGLAQLVLKLETLGWKVAIASGGFTFFAEYLRDKLHLDAVFANELEIR 232
                 444444...45555555555666666666644444555555.....3.46.************************************************ PP

         HAD 136 d.rltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpll 187
                 d +ltg   + g++v  + k++ lr+   ae+++i+ + +va+GD+ +Dlp+ 
  CTQ26319.1 233 DgKLTGN--VLGDIVDAKYKANTLRK--LAEKYEIPTAQTVAIGDGANDLPMI 281
                 *******..*****************..***********************96 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.2
         HAD  80 virpklldpgalellaahraaGdrvvvvSggl 111
                 +++pk   ++a   ++ h++    ++++Sg++
  CTQ26319.1 291 HAKPK-VNEQAEVTIR-HADLMGVFCILSGSM 320
                 56777.4488888888.777777899999987 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.9   7.1e-21   1.6e-17       3     210 .]     113     285 ..     112     285 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 7.1e-21
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtva 101
                 ++v+D+d T ++ e     +i+++                     a+  + ++ ++++++     ++++g+ +++++l               + r + 
  CTQ26319.1 113 LLVMDMDSTAIQIE-----CIDEI---------------------AKLAGTGELVSEVTE-----RAMRGELDFTASL---------------RQRVAT 165
                 589*********99.....*****.....................9999999999*****.....*************...............999999 PP

                 HHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCES..........STTTSHHHHHHHHHHHTST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxx RF
   Hydrolase 102 llqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdiet..........vakpspegkvaaireLqgk 189
                 l++a+a  ++ + d l+++p++a++v +L   g++v++++g++  +ae + ++l  d  f++++++ + +           ak + + ++++++++ ++
  CTQ26319.1 166 LKDADASILLQVRDALPLMPGLAQLVLKLETLGWKVAIASGGFTFFAEYLRDKLHlDAVFANELEIRDGKltgnvlgdivDAKYKANTLRKLAEKYEIP 264
                 9988888888899******************************************97777777777777776666657767777888888888888899 PP

                 GGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 190 peevamVGDgvnDaaalaaAg 210
                  ++++++GDg+nD+++++aAg
  CTQ26319.1 265 TAQTVAIGDGANDLPMIKAAG 285
                 ********************8 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.042        93      22      57 ..     189     224 ..     182     229 .. 0.86
   2 !   49.2   0.1   2.4e-16   5.5e-13     188     252 ..     250     313 ..     235     316 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.042
                  HHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSE CS
  Hydrolase_3  22 eaikklkekgikvviATGRslravlpvleelgldlp 57 
                  + + kl+  g kv+iA+G  + +++++ ++l+ld  
   CTQ26319.1 189 QLVLKLETLGWKVAIASGGFTFFAEYLRDKLHLDAV 224
                  566789999**********************99944 PP

  == domain 2  score: 49.2 bits;  conditional E-value: 2.4e-16
                  HHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHH CS
  Hydrolase_3 188 KgtalkklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVa 252
                  K+++l+kla+++ i+ ++++a+GDg ND++M++aaglg+A   a+++v + A  ++ +++  GV 
   CTQ26319.1 250 KANTLRKLAEKYEIPTAQTVAIGDGANDLPMIKAAGLGIAY-HAKPKVNEQAEVTIRHADLMGVF 313
                  9***************************************7.59************999988885 PP

>> Put_Phosphatase  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.1e-06    0.0025       2     117 ..     113     226 ..     112     231 .. 0.84
   2 ?    0.9   0.0      0.11   2.4e+02     165     183 ..     261     279 ..     248     288 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.1e-06
  Put_Phosphatase   2 lvvfDFDktiidedsdnwvvdelpatelfeelretlrkgl..wnelmdrvlkelheqgvseadikkvlrsiplspglvelikslakkkleldli 93 
                      l+v+D D t i+ +  + + +++++ el +e+ e   +g   ++  + + +++l++ + s+  + +v   +pl pgl +l+ +l  ++l++ + 
       CTQ26319.1 113 LLVMDMDSTAIQIECIDEIAKLAGTGELVSEVTERAMRGEldFTASLRQRVATLKDADASI--LLQVRDALPLMPGLAQLVLKL--ETLGWKVA 202
                      79*****************************998766443126666666666777666554..66778899************9..889***** PP

  Put_Phosphatase  94 iiSDaNsffieeileaagledlFs 117
                      i S   +ff e + +++ l  +F+
       CTQ26319.1 203 IASGGFTFFAEYLRDKLHLDAVFA 226
                      ***********9999999998886 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
  Put_Phosphatase 165 egveyerliYvGDganDlC 183
                       ++   + + +GDganDl 
       CTQ26319.1 261 YEIPTAQTVAIGDGANDLP 279
                      4556778999*******84 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         1   2.3e+03       3      14 ..     112     123 ..     110     137 .. 0.78
   2 !   16.8   0.0   1.7e-06    0.0038     165     205 ..     249     289 ..     237     316 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1
                 EEEEE-TBTTTB CS
        S6PP   3 lllvsdLDntlv 14 
                  llv d+D+t +
  CTQ26319.1 112 GLLVMDMDSTAI 123
                 699*******88 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.7e-06
                 SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE CS
        S6PP 165 skgeAlryLakkleleleqilvcGdsgnDeellignvlgVv 205
                  k+++lr La+k+e++  q++  Gd  nD  ++++  lg+ 
  CTQ26319.1 249 YKANTLRKLAEKYEIPTAQTVAIGDGANDLPMIKAAGLGIA 289
                 5999*****************************99999986 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.9e-05      0.15      76     173 ..     179     286 ..     118     290 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.9e-05
       HAD_2  76 kevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdv...ivtsedvekk.......KPdpeviekaleklklkkeeviyvGDsptD 164
                 + + +++g+ +l+ +L+  g k++i++ + +  +e   ++l ++ +F     i  ++ +++        K ++++++k+ ek+++  ++++ +GD  +D
  CTQ26319.1 179 DALPLMPGLAQLVLKLETLGWKVAIASGGFTFFAEYLRDKLHLDAVFANeleIRDGKLTGNVlgdivdaKYKANTLRKLAEKYEIPTAQTVAIGDGAND 277
                 467788888888888888888888888888888887777888877776411122222222223333444888*************************** PP

       HAD_2 165 ieaakkagi 173
                 +   k+ag+
  CTQ26319.1 278 LPMIKAAGL 286
                 *99999997 PP

>> BetR  BetR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00044      0.99      38      85 ..     144     191 ..     122     202 .. 0.87
   2 ?    0.3   0.0      0.29   6.4e+02      50      73 ..     250     273 ..     245     304 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00044
        BetR  38 qanRKlkGsipwnlaqlekvAktfgvpaaiLldltedkglnPGiqtae 85 
                 +++R ++G+  ++ +  ++vA+  +  a+iLl+  ++  l PG+++  
  CTQ26319.1 144 VTERAMRGELDFTASLRQRVATLKDADASILLQVRDALPLMPGLAQLV 191
                 678*****************************9999999999987655 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.29
        BetR  50 nlaqlekvAktfgvpaaiLldlte 73 
                 + + l+k+A+++++p a+ +   +
  CTQ26319.1 250 KANTLRKLAEKYEIPTAQTVAIGD 273
                 567799999999999998775444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2759.19
//
Query:       CTQ26320.1  [L=460]
Description: repair protein radA homolog [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-18   65.7   0.2    6.2e-11   42.1   0.1    2.2  2  ATPase           KaiC
    7.9e-16   58.2   0.1      2e-15   56.9   0.1    1.6  1  AAA_25           AAA domain
    1.5e-12   47.0   6.0    2.5e-12   46.3   6.0    1.4  1  Rubredoxin_2     Rubredoxin metal binding domain
    6.5e-10   38.9   0.1    1.5e-09   37.7   0.0    1.7  1  ChlI             Subunit ChlI of Mg-chelatase
    2.2e-08   33.9   0.1    5.4e-08   32.6   0.1    1.6  1  Lon_C            Lon protease (S16) C-terminal proteolytic do
      7e-08   32.1   0.2    0.00025   20.5   0.0    2.2  2  DnaB_C           DnaB-like helicase C terminal domain
      7e-07   28.8   0.4    0.00011   21.5   0.4    2.2  1  Rad51            Rad51
      4e-05   23.2   0.1    6.3e-05   22.6   0.1    1.3  1  RecA             recA bacterial DNA recombination protein
    0.00033   20.9   0.0    0.00066   20.0   0.0    1.5  1  AAA_22           AAA domain
     0.0012   18.2   0.5     0.0033   16.7   0.5    1.7  1  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0012   17.6   0.1        0.1   11.2   0.0    2.3  2  GvpD             GvpD gas vesicle protein
     0.0024   17.8   0.7       0.17   11.8   0.1    2.5  2  NTPase_1         NTPase
     0.0027   18.1   0.2     0.0069   16.8   0.2    1.7  1  AAA_16           AAA ATPase domain
     0.0031   17.3   0.0     0.0051   16.5   0.0    1.4  1  AAA_24           AAA domain
     0.0037   17.7   0.1     0.0077   16.7   0.1    1.5  1  AAA              ATPase family associated with various cellul
  ------ inclusion threshold ------
       0.01   15.5   0.0      0.017   14.7   0.0    1.5  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.013   16.0   0.0      0.025   15.1   0.0    1.5  1  ABC_tran         ABC transporter
      0.013   14.8   0.2      0.025   13.9   0.2    1.4  1  Zeta_toxin       Zeta toxin
      0.013   15.5   0.0      0.023   14.7   0.0    1.3  1  AAA_14           AAA domain
      0.015   15.1   0.3      0.058   13.1   0.3    1.9  1  AAA_30           AAA domain
      0.055   12.5   0.2       0.19   10.8   0.0    1.9  2  T2SSE            Type II/IV secretion system protein
      0.074   12.2   0.2       0.12   11.5   0.2    1.2  1  PAXNEB           PAXNEB protein
        0.1   12.4   0.7       0.23   11.2   0.7    1.5  1  AAA_29           P-loop containing region of AAA domain
       0.11   12.5   1.5       0.17   11.9   0.7    1.7  2  DZR              Double zinc ribbon
       0.14   11.7   0.3        8.2    5.8   0.1    2.2  2  DUF1258          Protein of unknown function (DUF1258)
       0.17    9.7   0.0       0.27    9.1   0.0    1.2  1  Herpes_Helicase  Helicase
       0.21   11.7   0.0       0.32   11.1   0.0    1.2  1  XLF              XLF-Cernunnos, XRcc4-like factor, NHEJ compo
       0.25   10.2   0.0       0.39    9.6   0.0    1.2  1  tRNA-synt_1f     tRNA synthetases class I (K)


Domain annotation for each model (and alignments):
>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   9.7e-14   6.2e-11       2      75 ..      78     149 ..      77     156 .. 0.93
   2 !   21.9   0.0   1.5e-07   9.3e-05     107     207 ..     158     261 ..     147     278 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 9.7e-14
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenakslGwdle 75 
                 +tg +++D++l gG+  g+++li G+pG+GK+++ lq l k  ++ g ++++vt ee+ +++  +a++lG  + 
  CTQ26320.1  78 STGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKL-AE-GMKTLYVTGEESLQQVAMRAHRLGLPTA 149
                 69*************************************998.55.8**********************98665 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 1.5e-07
      ATPase 107 lieelaeaikeikakrvviDsitgl.ayeeke.....avaReilrqlvrvlkklgvTailvsekssseeaaggygveefivdgvivLdlkeieeelvRt 199
                  ie++ ++ +e k + +viDsi+++ + + ++     a++Re+   l+r+ k +gv  ++v  ++++ ++  g++v e+ +d+ + Ld    ++++ Rt
  CTQ26320.1 158 SIEQICQIADEEKPQLMVIDSIQVMhMADVQSspgsvAQVRETAAYLTRFAKTRGVAIVMVGHVTKD-GSLAGPKVLEHCIDCSVLLDG--DADSRFRT 253
                 5789999999*************99655443322222689*********************997655.88889999888********94..45678888 PP

      ATPase 200 leivkmRg 207
                 l+  k R 
  CTQ26320.1 254 LRSHKNRF 261
                 88888876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.1   3.1e-18     2e-15      25     193 ..      88     225 ..      76     226 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 3.1e-18
      AAA_25  25 lvkgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfakdrgg 123
                 l +g++p g+ +l+ G pg+GK+tl+l+  +++a+G            k+lyv +E+s ++++ R++++g      a+l  l+                
  CTQ26320.1  88 LGGGVVP-GSAILIGGNPGAGKSTLLLQTLCKLAEGM-----------KTLYVTGEESLQQVAMRAHRLGLPT---ANLNMLS---------------- 155
                 4457765.**************************987...........89*******************9997...8999998................ PP

      AAA_25 124 tlltadvdaleaaieevegvrlvviDplsralggdensnsd....vgalvealeriarrtgaavllvhHvgKes 193
                    +  ++++ + ++e e+++l viD+++ ++ +d +s+      v++  + l r+a+  g+a+++v Hv K++
  CTQ26320.1 156 ---ETSIEQICQIADE-EKPQLMVIDSIQVMHMADVQSSPGsvaqVRETAAYLTRFAKTRGVAIVMVGHVTKDG 225
                 ...36799********.99***************9999977665579999**********************97 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   6.0   3.9e-15   2.5e-12       1      28 []       9      36 ..       9      36 .. 0.98

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 3.9e-15
  Rubredoxin_2  1 YvCsqCGfesakwfGrCpsCgsWntlke 28
                  +vC++CG+++++w+G+C +C++Wnt++e
    CTQ26320.1  9 FVCNECGADYPRWQGQCSACHAWNTITE 36
                  8*************************97 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   2.4e-12   1.5e-09      35     121 .]     348     433 ..     312     433 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 2.4e-12
        ChlI  35 nsgfefpakkitvnLaPadlkkeGsafDLpiAigilaaleqieaeeetlflGeLsldGslrpvkgvlpialaakkegikkvivpken 121
                 + g ++ ++ + vn+    +k + ++ DL++ ++++++l + +  ++++++Ge++l G++rpv    + + +a+k+g++++ivp++n
  CTQ26320.1 348 HGGLQMADQDVFVNVVGG-VKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN 433
                 3789999********988.99999************************************************************998 PP

>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   8.4e-11   5.4e-08      94     200 ..     356     455 ..     347     457 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 8.4e-11
                 -EEEEEE-S-B-GGGGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGGGTTTS-HHHHTS-B--EE CS
       Lon_C  94 kdihihvPeGavPkdGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenekdlediPeevreeleiilv 192
                 +d+ + v    v     sa ++l+ a+vs l++++  +d+ + Ge+ L G++ p+   +e++  a + g ++ i+P +n      +P++v e+++i  v
  CTQ26320.1 356 QDVFVNVVG-GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAAN------VPKKVPEGMQIFGV 447
                 566666654.45555679**********************************************************987......89999999999999 PP

                 SBHHHHHH CS
       Lon_C 193 eevdevlk 200
                 +++++ l+
  CTQ26320.1 448 KKLSDALS 455
                 99998775 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.8e-07   0.00025       3      67 ..      78     141 ..      77     150 .. 0.89
   2 !    9.5   0.1   0.00086      0.55     121     176 ..     162     219 ..     145     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.8e-07
                 XSSTHHHHHHCT.SBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEEESSSXHHHHHHHH CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   3 stgfkdLDklts.GlqkgdliiiAarpsmGktalalniaenaavkeklpvavfslemsaeqlvqRl 67 
                 stgfk++D++++ G+ +g  i+i++ p+ Gk++l l+   + a+   ++ +++  e s +q+++R 
  CTQ26320.1  78 STGFKEFDRVLGgGVVPGSAILIGGNPGAGKSTLLLQTLCKLAE--GMKTLYVTGEESLQQVAMRA 141
                 79******98862799**********************999986..67789999999999999985 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00086
                 HHHHHHHTTEEEEEEEEGGGTBTS.CS.SSCCCHHHHHHHHHHHHHHHHCTSXEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 121 arrlkkekglgliviDyLqlmegs.ee.kenreqevseisrsLkalakelnvpvials 176
                 + +++ e++ +l+viD +q+m+ +  + +   + +v e +  L  +ak   v ++++ 
  CTQ26320.1 162 ICQIADEEKPQLMVIDSIQVMHMAdVQsSPGSVAQVRETAAYLTRFAKTRGVAIVMVG 219
                 4456778999************7644324488999**************999999875 PP

>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.4   1.7e-07   0.00011      16     189 ..      74     224 ..      55     249 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.7e-07
                 S-EE--S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHTT--HHHHGGGEEEEE--ST CS
       Rad51  16 llqlttGskklDelLgGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaerykldkeevlenvayaRayti 114
                 l + +tG k++D++LgGG+  gs   i G+ ++Gk+ l       ++l    +G+  k++y+  e +++   +   a+r +l ++++  n+        
  CTQ26320.1  74 LPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLL--QTLCKLA---EGM--KTLYVTGEESLQQ--VAMRAHRLGLPTANL--NML------- 154
                 55789******************************98754..3456665...555..789***9999864..555678888876543..221....... PP

                 THHHHHHHHTHHHHHHS-EEEEEEETTTGGGCH---.----THHHHHHHHHHHHHHHHHHHHH--EEEEEEE---- CS
       Rad51 115 ehqeellqqaaallaedkfallivDsvtalyRtdfs.grgelakRqqklgkllrtLrkladefevavvitnqvvaq 189
                    e  ++q+++   e+k +l+++Ds+  ++ +d +   g +a    ++ +++  L+++a+  +va+v+  +v+++
  CTQ26320.1 155 --SETSIEQICQIADEEKPQLMVIDSIQVMHMADVQsSPGSVA----QVRETAAYLTRFAKTRGVAIVMVGHVTKD 224
                 ..233467778888999**************999651557776....567789999*************9999876 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   9.8e-08   6.3e-05      17     141 ..      61     180 ..      48     219 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 9.8e-08
                 TSS--TTS--.-----EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEESS----HH..HHHHTT--GGG-EEE-- CS
        RecA  17 gsimklgdekeklkvetissGslaldialGiGGlpkGriieiyGpessGkttlalhaiaeaqkkggvaafidaehaldpk..yakklGvdidellvsqp 113
                 + + kl d +  + +  +s+G   +d  lG GG+  G  i i G   +Gk+tl l+++++   +g  + ++  e +l+ +   a++lG+ + +l +   
  CTQ26320.1  61 SKVQKLSDIS-LEALPRFSTGFKEFDRVLG-GGVVPGSAILIGGNPGAGKSTLLLQTLCKLA-EGMKTLYVTGEESLQQVamRAHRLGLPTANLNMLSE 156
                 5566665555.46777899***********.7787899999******************985.688889********96522799*********99888 PP

                 SSHHHHHHHHHHHHTTT--SEEEEE-TT CS
        RecA 114 dtGeqaleiadalvrsgaidlivvdsva 141
                  + eq  +iad        +l+v+ds+ 
  CTQ26320.1 157 TSIEQICQIADE----EKPQLMVIDSIQ 180
                 888888888775....455666777665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     1e-06   0.00066       6     130 ..      96     220 ..      93     222 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr 104
                 + +++ G +G+GK+tll + l +l e       + ++++vt  +s   +++  + ++ lgl++ + +  se  +e++ q +++ +  +l++iD +q + 
  CTQ26320.1  96 SAILIGGNPGAGKSTLLLQTLCKLAE-------GMKTLYVTGEESL--QQV-AMRAHRLGLPTANLNMLSETSIEQICQIADEEKP-QLMVIDSIQVMH 183
                 678999*********99999999843.......6666666655555..554.3445556666666333666777**********99.*********997 PP

      AAA_22 105 .....s........eealeeLrsllnlsrkgvqliLvGt 130
                      s         e   +L ++++  + gv++++vG+
  CTQ26320.1 184 madvqSspgsvaqvRETAAYLTRFAK--TRGVAIVMVGH 220
                 77765166677666666666666666..*******9995 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.5   5.2e-06    0.0033       3      52 ..      97     143 ..      95     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.2e-06
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlreala 52 
                  +l+ G++G+GK+ +ll+ l +l   +e+ ++ y+++ ++l++v  +a +
  CTQ26320.1  97 AILIGGNPGAGKSTLLLQTLCKL---AEGMKTLYVTGEESLQQVAMRAHR 143
                 689********************...9999*********99999876654 PP

>> GvpD  GvpD gas vesicle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00016       0.1       9      45 ..      94     130 ..      84     141 .. 0.91
   2 ?    4.1   0.0     0.023        15      95     185 ..     159     256 ..     141     281 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
        GvpD   9 aGktllikGaPGtGktlftlrgldvlrresdvlyvst 45 
                 +G ++li G+PG+Gk ++ l+ l  l +  + lyv+ 
  CTQ26320.1  94 PGSAILIGGNPGAGKSTLLLQTLCKLAEGMKTLYVTG 130
                 6999******************************975 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.023
        GvpD  95 lefvdeiaaiatkliialdswelvyeylaerydsPediktvknd...lvvlaresgvrlvlvletaa......nsrleyivdGvvtlnvkeddrgrlrr 184
                 +e + +ia   +  ++ +ds  + +  +a    sP ++  v++    l  +a+  gv +v+v    +      ++ le+ +d  v l+   d r r+ r
  CTQ26320.1 159 IEQICQIADEEKPQLMVIDS--IQVMHMADVQSSPGSVAQVRETaayLTRFAKTRGVAIVMVGHVTKdgslagPKVLEHCIDCSVLLDGDADSRFRTLR 255
                 334444666666667899*9..55567999999****8888776222556688899999999775441111125679**********999999999888 PP

        GvpD 185 d 185
                 +
  CTQ26320.1 256 S 256
                 7 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00026      0.17       2      27 ..      98     122 ..      97     130 .. 0.86
   2 ?    4.1   0.1     0.062        40      57     107 ..     131     182 ..     123     197 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00026
                 EEEE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssg 27 
                 ++i G+pG GK+Tl+ + l++l+ +g
  CTQ26320.1  98 ILIGGNPGAGKSTLLLQTLCKLA-EG 122
                 799****************9995.44 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.062
                 EEEEEETT---SSEETTEEE-HHHHHHHHHHHHHHHH..HHH-EEEE---STT CS
    NTPase_1  57 egiLarveakreprvgkyvvdvesfeelalealrkal..seadviviDEiGkm 107
                 e+ L +v   r  r+g  + +++ ++e  +e++ +    ++++++viD i  m
  CTQ26320.1 131 EESLQQVA-MRAHRLGLPTANLNMLSETSIEQICQIAdeEKPQLMVIDSIQVM 182
                 45566666.7889999999999999999999997766678899*****98666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   1.1e-05    0.0069      18      63 ..      86     135 ..      82     218 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.1e-05
      AAA_16  18 rvrsgrp...elvllsGesGvGKsslv.rellralekdggiflrgkcdql 63 
                 rv  g+    +++l+ G++G GKs+l+ ++l + +e+ + ++++g+    
  CTQ26320.1  86 RVLGGGVvpgSAILIGGNPGAGKSTLLlQTLCKLAEGMKTLYVTGEESLQ 135
                 555555566799***************77777766666655555555554 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     8e-06    0.0051       5      77 ..      98     182 ..      95     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8e-06
      AAA_24   5 iliyGpsgiGKTtlakel......gpkplfidtekGlksldadkfpdie....swedfldevvel...aaeladyktlviDtidel 77 
                 ili G +g+GK+tl+++       g k+l++  e++l+++  +    +     +++++ ++  e     a++++ +  viD+i+ +
  CTQ26320.1  98 ILIGGNPGAGKSTLLLQTlcklaeGMKTLYVTGEESLQQVAMRAHR-LGlptaNLNMLSETSIEQicqIADEEKPQLMVIDSIQVM 182
                 8999*************99****************99987665522.223447444444444444566455555799999999876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.2e-05    0.0077       1      75 [.      98     190 ..      98     229 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.2e-05
                 EEEESSTTSSHHHHHHHHHHHH..THEEEEEETTTCSSS..............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...T CS
         AAA   1 vllyGppGtGKTllakavakel..gvefleisgsellsk..............yvgesekkirelfkeakekakpsilfiDEidalaksr...s 75 
                 +l+ G+pG GK++l  +   +l  g++ l + g e l++              +   se +i+++ + a e++ p  ++iD i  ++ ++   s
  CTQ26320.1  98 ILIGGNPGAGKSTLLLQTLCKLaeGMKTLYVTGEESLQQvamrahrlglptanLNMLSETSIEQICQIADEEK-PQLMVIDSIQVMHMADvqsS 190
                 5788*******777665555553668889999999997789999999999999889999***********998.************99995422 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.7e-05     0.017       2      36 ..      97     132 ..      96     183 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.7e-05
                 EEEEEESTTCCHHHHHHHHH.CT--SS-EEEEESS- CS
        cobW   2 vtvltGflGsGKTtLlnhll.enraglklavivNef 36 
                 +++++G +G+GK+tLl ++l + ++g+k+  +++e 
  CTQ26320.1  97 AILIGGNPGAGKSTLLLQTLcKLAEGMKTLYVTGEE 132
                 5789**********9988887999999988888774 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0     4e-05     0.025       8      76 ..      92     159 ..      88     210 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4e-05
                 EETTSEEEEEESTTSSHHHHH.HHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBH CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLl.kllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltv 76 
                 + +g+ + i G+ GaGKStLl ++l++l +  + ++ + g+++ + +     +++g  + + ++ +e+++
  CTQ26320.1  92 VVPGSAILIGGNPGAGKSTLLlQTLCKLAE-GMKTLYVTGEESLQ-QVAMRAHRLGLPTANLNMLSETSI 159
                 668999*************86266666655.45566666555555.344444555555555555555544 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   3.8e-05     0.025      18      41 ..      97     120 ..      95     134 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.8e-05
  Zeta_toxin  18 lillgGqpGAGKselaellkdele 41 
                 +il+gG pGAGKs+l+  +  +l+
  CTQ26320.1  97 AILIGGNPGAGKSTLLLQTLCKLA 120
                 89*************988877765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.6e-05     0.023       4      77 ..      97     183 ..      95     224 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.6e-05
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderd..........kkladpekllelilek.lke.......ekktylflDEiqevp 77 
                 +++i G   +GK+tll q + +l  +  ++ly++ ++  +               p+ +l+++ e  +++       ek +++++D iq + 
  CTQ26320.1  97 AILIGGNPGAGKSTLLLQTLCKLA-EGMKTLYVTGEESLQqvamrahrlgL----PTANLNMLSETsIEQicqiadeEKPQLMVIDSIQVMH 183
                 678889999***********9988.99999999999977755444333231....22333333333222244466668999********883 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3     9e-05     0.058      21     125 ..      98     221 ..      93     243 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9e-05
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkv.La.eelgieastiakllkrlk....grarlepgtllivDEagmv............. 100
                  ++ G +G+GK+t+l +    +++ g++ + ++ ++   +v ++ + lg+++++++ l ++      + a+ e+ +l+++D + ++             
  CTQ26320.1  98 ILIGGNPGAGKSTLLLQTLCKLAE-GMKTLYVTGEESLQQVaMRaHRLGLPTANLNMLSETSIeqicQIADEEKPQLMVIDSIQVMhmadvqsspgsva 195
                 56889********98666444443.55555555444444443653589********9885554999855555667******998875666666666554 PP

      AAA_30 101 .dtkqlaallkaaekagakvilvGDe 125
                    +++a l++ a+++g+ +++vG  
  CTQ26320.1 196 qVRETAAYLTRFAKTRGVAIVMVGHV 221
                 33334455666666677777777765 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00029      0.19      98     161 ..      64     128 ..      32     165 .. 0.79
   2 ?   -1.6   0.0       1.8   1.1e+03     179     208 ..     368     400 ..     360     401 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00029
       T2SSE  98 ksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks.deriv 161
                 ++ ++++l+ l    +  +++++vl   v     il+ G  g GK+tll   l ++++  +   v
  CTQ26320.1  64 QKLSDISLEALPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAEGmKTLYV 128
                 556677777787788888999***************************98888777776244444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.8
       T2SSE 179 lnakkakvtfadllraaLRlrP...DrimvGEi 208
                 + + +a++ +  ++ ++LR rP   D ++ GE+
  CTQ26320.1 368 VTETSADLALLLAMVSSLRDRPlpqDLVVFGEV 400
                 44445666666677899****999999**9998 PP

>> PAXNEB  PAXNEB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00018      0.12      18      43 ..      76     101 ..      69     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
      PAXNEB  18 ltStGtpsLDklLgGGLplGsillie 43 
                   StG +++D++LgGG+  Gs +li 
  CTQ26320.1  76 RFSTGFKEFDRVLGGGVVPGSAILIG 101
                 57**********************96 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   0.00037      0.23      24      39 ..      97     112 ..      88     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00037
      AAA_29  24 atlltGpsGsGKSTll 39 
                 a+l+ G+ G+GKSTll
  CTQ26320.1  97 AILIGGNPGAGKSTLL 112
                 78999**********8 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7   0.00026      0.17       7      37 ..       3      31 ..       1      39 [. 0.81
   2 ?   -2.7   0.0       9.7   6.2e+03      30      35 ..     235     240 ..     225     248 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00026
         DZR  7 elppdarfCseCgtklkavaaedrCpsCgek 37
                + p++a +C+eCg++ +    + +C++C++ 
  CTQ26320.1  3 KAPKRAFVCNECGADYP--RWQGQCSACHAW 31
                678999*********86..34899****986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 9.7
         DZR  30 rCpsCg 35 
                 +C  C+
  CTQ26320.1 235 HCIDCS 240
                 555554 PP

>> DUF1258  Protein of unknown function (DUF1258)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.013       8.2      17      51 ..       9      45 ..       5      49 .. 0.83
   2 ?    3.6   0.0     0.059        38     126     183 ..     146     205 ..     129     212 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.013
     DUF1258 17 kfcnkcGkvv.aksekcelcgg.kvakfvrvgafsql 51
                ++cn+cG    + + +c+ c + + ++ +r+ a  q+
  CTQ26320.1  9 FVCNECGADYpRWQGQCSACHAwNTITEMRIAASPQV 45
                79*****876256789*****9999999999998887 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.059
     DUF1258 126 lPvaemqkstnillegivecs..enPstalWnallPlilsdlesktGkvkkvkfkarivt 183
                 lP+a+    ++  +e i + +  e+P  ++ ++++ + ++d++s+ G v++v+ +a  +t
  CTQ26320.1 146 LPTANLNMLSETSIEQICQIAdeEKPQLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLT 205
                 677777776677777776654227899999*******************99987776655 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00042      0.27      21      79 ..      60     116 ..      55     133 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00042
  Herpes_Helicase  21 vekikeLsrertaeepelewfrseldleeeeeselslPFsaylitGtAGaGksts.iqal 79 
                      v+k+++Ls+++ +  p++++  +e+d     +    +P sa li G+ GaGkst  +q+l
       CTQ26320.1  60 VSKVQKLSDISLEALPRFSTGFKEFDRVLGGGV---VPGSAILIGGNPGAGKSTLlLQTL 116
                      899999**9999999998776677776666666...8****************9623555 PP

>> XLF  XLF-Cernunnos, XRcc4-like factor, NHEJ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0005      0.32      94     161 ..     106     173 ..      85     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0005
         XLF  94 aeedsLtlkltieLpgplspleWefslvkepsssltkeLvlpllqasaelkrqveeLieilkeKDavI 161
                 a++++L l++ ++L++++++l+++ + ++++  +++  L lp+ +++  +++++e+ ++i+ e +  +
  CTQ26320.1 106 AGKSTLLLQTLCKLAEGMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICQIADEEKPQL 173
                 56789******************************************************998765555 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00061      0.39     253     300 ..     158     205 ..     153     208 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00061
  tRNA-synt_1f 253 vsskiaeilggeaPekvvYelillkggekmssSkGnvltledwlevae 300
                     ++i++i + e+P+ +v + i++ ++++++sS G v  +++   +++
    CTQ26320.1 158 SIEQICQIADEEKPQLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLT 205
                   5689*************************************9988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 3215.71
//
Query:       CTQ26321.1  [L=410]
Description: bifunctional DNA-binding transcriptional repressor and NMN adenylyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-27   95.9   0.0    4.4e-27   95.3   0.0    1.3  1  AAA_28           AAA domain
      1e-09   38.3   0.1    3.6e-09   36.5   0.1    1.8  2  HTH_3            Helix-turn-helix
    5.3e-07   29.9   0.0    1.2e-06   28.8   0.0    1.6  1  HTH_31           Helix-turn-helix domain
    6.3e-07   29.3   0.1    5.6e-06   26.3   0.0    2.5  4  HTH_19           Helix-turn-helix domain
    0.00021   21.7   0.0    0.00043   20.7   0.0    1.5  1  HTH_26           Cro/C1-type HTH DNA-binding domain
    0.00069   19.8   0.0     0.0068   16.6   0.0    2.3  2  CTP_transf_like  Cytidylyltransferase-like
     0.0026   17.5   0.0      0.015   15.0   0.0    2.3  3  Citrate_ly_lig   Citrate lyase ligase C-terminal domain
     0.0078   16.7   0.0        0.4   11.2   0.0    2.3  2  ABC_tran         ABC transporter
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.032   14.2   0.0    1.5  1  HTH_37           Helix-turn-helix domain
      0.022   14.9   0.0      0.039   14.0   0.0    1.5  1  MMR_HSR1         50S ribosome-binding GTPase
      0.038   14.0   0.0      0.074   13.1   0.0    1.4  1  HTH_35           Winged helix-turn-helix DNA-binding
      0.087   12.6   0.0       0.19   11.5   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
       0.14   12.0   0.0       0.71    9.7   0.0    2.1  2  FAD_syn          FAD synthetase
       0.21   11.6   0.4        0.4   10.7   0.4    1.4  1  Dynamin_N        Dynamin family


Domain annotation for each model (and alignments):
>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.0   3.4e-30   4.4e-27       2     163 .]     234     394 ..     233     394 .. 0.92

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 3.4e-30
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvvpEaareileeklakgedalpwv.edllafaervleeqleeeaaaaankvlfcDrglldtlaYarayggeaea 98 
                 ++i+Gges+GK+tl+++La+  +++  +E++r++++++l  +e al+++ +d++a+ +    +q+ + a   ankv f+D++++ t a++  y+g+ ++
  CTQ26321.1 234 VAILGGESSGKSTLVNKLANIfNTTSAWEYGRDYVFSHLGGDEMALQYSdYDKIALGH----AQYIDFAVKYANKVAFIDTDFVSTQAFCLKYEGREHP 328
                 89******************9899999*********************8666666655....6888999999************************777 PP

      AAA_28  99 eleaaarekrydlvfllppapeidddgeRr.edleereaiderlrealrelgipviivpsgdveeR 163
                  ++a + e r dlv+ll+++ +++ dg R   +  +r++++ +l ++l+e  i+++ v+  d+++R
  CTQ26321.1 329 FVQALIDEYRFDLVILLENNTPWVADGLRSlGSSVDRKEFQSLLVSLLKENEIEFVHVKESDYDAR 394
                 78889**************88888*****856999***********************99998877 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   2.8e-12   3.6e-09       1      51 [.       7      58 ..       7      60 .. 0.96
   2 ?   -1.8   0.0       2.7   3.4e+03      42      54 ..     249     261 ..     246     261 .. 0.81

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 2.8e-12
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSE CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvs 51
                lk + kq+g +++++Ae++G+++ ++s++ n  + +Ps ++l++l ++Lg++
  CTQ26321.1  7 LKSAIKQKGCTLQQVAEASGMTKGYLSQLLNAkIKSPSAQKLEALHRFLGLE 58
                78999****************************999**************86 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.7
                 HHHHHHHTSEHHH CS
       HTH_3  42 kklakaLgvslde 54 
                  kla+ ++++ ++
  CTQ26321.1 249 NKLANIFNTTSAW 261
                 69******98766 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   9.2e-10   1.2e-06      11      57 ..      12      58 ..       5      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 9.2e-10
      HTH_31 11 eraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                ++ G ++++vAe++g+++ +ls+l ++++  ps + leal r lgl+
  CTQ26321.1 12 KQKGCTLQQVAEASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLE 58
                57899****************************************95 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   4.4e-09   5.6e-06       3      54 ..       6      57 ..       5      61 .. 0.95
   2 ?   -1.4   0.0         2   2.5e+03      32      55 ..     170     193 ..     167     197 .. 0.75
   3 ?   -2.5   0.0       4.2   5.4e+03      44      55 ..     247     258 ..     236     268 .. 0.77
   4 ?   -3.4   0.0       7.9     1e+04      30      52 ..     259     285 ..     253     287 .. 0.71

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4.4e-09
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgi 54
                 Lk a++++g t++++ae  g++++++s++ n k++ psa +l ++ ++lg+
  CTQ26321.1  6 YLKSAIKQKGCTLQQVAEASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGL 57
                69********************************************999997 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2
      HTH_19  32 iEngkkdvpsaelllkiaealgid 55 
                 iE +++++ +  + ++++e lgi+
  CTQ26321.1 170 IEPNRIYTSEEADAPQYLEHLGIE 193
                 677777555577779999999997 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4.2
      HTH_19  44 lllkiaealgid 55 
                 l++k+a++++ +
  CTQ26321.1 247 LVNKLANIFNTT 258
                 568999998865 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 7.9
      HTH_19  30 saiEngkkdvps....aelllkiaeal 52 
                 sa+E g+ +v+s     e+ l+++ + 
  CTQ26321.1 259 SAWEYGRDYVFShlggDEMALQYSDYD 285
                 788888777777666677777776665 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.4e-07   0.00043       2      52 ..       7      57 ..       6      59 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.4e-07
      HTH_26  2 LrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgc 52
                L+ +++++g+t +++a+++g++++ ls l++ k++++s++ L+++ + Lg 
  CTQ26321.1  7 LKSAIKQKGCTLQQVAEASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGL 57
                78899****************************************999986 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.3e-06    0.0068       2      41 ..      69     107 ..      68     118 .. 0.87
   2 ?    0.2   0.0       0.6   7.7e+02       6      26 ..     284     304 ..     282     316 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.3e-06
                      EEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST CS
  CTP_transf_like   2 agGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkk 41 
                      + G F p+H GH+ l+++a ++++e l +++ +d++ +++
       CTQ26321.1  69 VFGKFYPLHTGHIYLIQRACSQVDE-LHIIMGYDDTRDRE 107
                      6799*********************.99999999988765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.6
                      -TT--HHHHHHHHHHHHHSSE CS
  CTP_transf_like   6 FDpiHlGHlrlleqakkllee 26 
                      +D i lGH+++++ a k+ ++
       CTQ26321.1 284 YDKIALGHAQYIDFAVKYANK 304
                      78999*********9999887 PP

>> Citrate_ly_lig  Citrate lyase ligase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.7   7.3e+03     103     116 ..      45      58 ..      34      59 .. 0.80
   2 !   15.0   0.0   1.2e-05     0.015      10      40 ..      75     105 ..      66     133 .. 0.85
   3 ?   -1.3   0.0       1.2   1.5e+03     124     154 ..     367     397 ..     357     409 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.7
  Citrate_ly_lig 103 akalgitkryvGee 116
                     a++l+  +r++G e
      CTQ26321.1  45 AQKLEALHRFLGLE 58 
                     88999999999977 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.2e-05
  Citrate_ly_lig  10 PftlGhryLvekaakendvvhlfvvkedksl 40 
                     P   Gh yL+++a+++ d +h+ +  +d+  
      CTQ26321.1  75 PLHTGHIYLIQRACSQVDELHIIMGYDDTRD 105
                     8899******************998887654 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.2
  Citrate_ly_lig 124 aYnqalkevlekaeievveierkekeeelis 154
                     ++   l + l+++eie v ++ ++++ +++ 
      CTQ26321.1 367 EFQSLLVSLLKENEIEFVHVKESDYDARFLR 397
                     4566678899999999999999988877765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.11   1.3e+02      54     114 ..     117     211 ..      85     214 .. 0.73
   2 !   11.2   0.0   0.00032       0.4      13      37 ..     233     257 ..     229     263 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.11
                 HHHCCHCEEEE-SS--S-TTSBHHHH...................................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  54 leslrkeigvlpqepqlfpeltvren...................................esdeeiekalsklglkelkdtvvksspssLSgGqk 114
                  + +  ++++l q+ + +++++++                                      +++++ ++l++lg++ +  ++ k+   ++SgGq 
  CTQ26321.1 117 QPTVPDRLRWLLQTFKYQKNIRIHAFneegmepyphgwdvwshgirafmsekgiepnriytSEEADAPQYLEHLGIETVLIDP-KRTFMNISGGQI 211
                 566666777777776666666655546778888888888888888888888888888887777777999******99977666.46669*****95 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00032
                 EEEEEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkp 37 
                 +vai+G   +GKStL++ la+  + 
  CTQ26321.1 233 TVAILGGESSGKSTLVNKLANIFNT 257
                 79***************99987665 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.5e-05     0.032      23      64 ..       7      48 ..       2      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.5e-05
                HHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHH CS
      HTH_37 23 iaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkL 64
                ++  i++++ + +++a++ g+++  +s+ll++k+++ s +kL
  CTQ26321.1  7 LKSAIKQKGCTLQQVAEASGMTKGYLSQLLNAKIKSPSAQKL 48
                7889******************************99998888 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.1e-05     0.039       2      22 ..     234     254 ..     233     310 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.1e-05
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 vai+G   +GKStL+n+l + 
  CTQ26321.1 234 VAILGGESSGKSTLVNKLANI 254
                 9*****************984 PP

>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.8e-05     0.074       8      38 ..       8      38 ..       5      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.8e-05
      HTH_35  8 iAaLrkrgttLaalsreaglssstlsnaltr 38
                ++a++++g tL+++++++g+ +  ls+ l+ 
  CTQ26321.1  8 KSAIKQKGCTLQQVAEASGMTKGYLSQLLNA 38
                89********************999988865 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00015      0.19      15      45 ..     225     254 ..     218     263 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
      AAA_29  15 htieidlkgatlltGpsGsGKSTllDAiqal 45 
                 ++ ++ ++  + + G   sGKSTl+  ++ +
  CTQ26321.1 225 EVKPFFVRT-VAILGGESSGKSTLVNKLANI 254
                 555555554.89************9766665 PP

>> FAD_syn  FAD synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00055      0.71       5      38 ..      63      96 ..      59     144 .. 0.74
   2 ?   -1.5   0.0       1.6     2e+03      15      35 ..     284     304 ..     276     308 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00055
     FAD_syn  5 degavvtlGnFDGvHlGHqallkkaveaakekgl 38
                +++  v++G+F  +H GH  l+++a ++ +e ++
  CTQ26321.1 63 QKSVGVVFGKFYPLHTGHIYLIQRACSQVDELHI 96
                5667799******************998766553 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.6
     FAD_syn  15 FDGvHlGHqallkkaveaake 35 
                 +D + lGH + ++ av+ a++
  CTQ26321.1 284 YDKIALGHAQYIDFAVKYANK 304
                 677789*******99999976 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4   0.00032       0.4       1      19 [.     234     252 ..     234     256 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00032
                 EEEEEBTTTTHHHHHHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLl 19 
                 +a++G  SsGKS+++n+L 
  CTQ26321.1 234 VAILGGESSGKSTLVNKLA 252
                 799*************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3014.25
//
Query:       CTQ26322.1  [L=555]
Description: putative transport protein (ABC superfamily, atp_bind) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-59  200.5   0.1    2.7e-32  112.1   0.0    2.9  3  ABC_tran       ABC transporter
    2.3e-16   60.5   2.8    0.00016   21.6   0.0    4.3  4  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    8.8e-14   51.3   8.1    2.1e-12   46.9   3.2    2.3  2  ABC_tran_Xtn   ABC transporter
      5e-07   29.4   0.3       0.39   10.1   0.0    4.0  4  SMC_N          RecF/RecN/SMC N terminal domain
    6.2e-06   26.3   0.1      0.058   13.5   0.0    2.5  2  MMR_HSR1       50S ribosome-binding GTPase
    1.6e-05   24.6   0.9      0.024   14.4   0.1    2.4  2  AAA_29         P-loop containing region of AAA domain
    3.1e-05   24.6   8.0     0.0057   17.2   0.0    3.0  2  AAA_23         AAA domain
    0.00012   22.4   0.2      0.058   13.7   0.0    3.0  2  AAA_22         AAA domain
    0.00031   20.7   0.2      0.081   12.8   0.0    2.3  2  RsgA_GTPase    RsgA GTPase
      0.002   18.3   0.9        1.8    8.9   0.0    4.0  2  SbcCD_C        Putative exonuclease SbcCD, C subunit
     0.0021   17.7   0.4       0.41   10.2   0.0    2.8  3  AAA_27         AAA domain
     0.0022   18.1   0.2        1.4    9.1   0.0    2.7  2  AAA_33         AAA domain
     0.0026   18.2   7.5        2.7    8.3   0.0    3.7  3  AAA_16         AAA ATPase domain
      0.003   18.1   1.3        2.6    8.6   0.1    3.3  3  AAA_18         AAA domain
     0.0033   16.4   0.3        1.4    7.9   0.1    2.3  2  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me
     0.0066   16.7   0.9       0.58   10.4   0.0    2.9  2  AAA_28         AAA domain
     0.0076   16.0   0.2        1.4    8.6   0.0    2.5  2  AAA_24         AAA domain
  ------ inclusion threshold ------
      0.015   14.8   0.0        1.1    8.7   0.0    2.3  2  Arf            ADP-ribosylation factor family
      0.018   15.3   1.0        1.3    9.2   0.0    2.8  2  Roc            Ras of Complex, Roc, domain of DAPkinase
      0.021   14.9   0.1        2.3    8.2   0.0    2.8  3  Dynamin_N      Dynamin family
      0.038   13.7   0.2       0.22   11.1   0.0    2.0  2  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
      0.061   12.9   0.5          4    7.0   0.0    2.3  2  cobW           CobW/HypB/UreG, nucleotide-binding domain
      0.061   12.5   1.1          2    7.5   0.0    2.8  3  NB-ARC         NB-ARC domain
      0.071   12.7   0.3         15    5.1   0.0    3.6  4  AAA_25         AAA domain
      0.085   12.6   0.5         10    5.8   0.0    2.6  2  AAA_30         AAA domain
       0.13   11.1   0.1        6.9    5.4   0.0    2.1  2  DLIC           Dynein light intermediate chain (DLIC)
       0.14   12.2   0.1        7.3    6.6   0.0    3.0  3  AAA_14         AAA domain
       0.21   11.2   0.3        8.7    5.9   0.0    2.4  2  SRP54          SRP54-type protein, GTPase domain
       0.35   11.1  11.2          1    9.5   0.1    2.2  2  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
       0.35    9.4   6.6        2.8    6.4   0.0    2.9  2  AAA_13         AAA domain
        1.2    9.9   4.5       0.32   11.7   0.9    1.8  1  MRP-L46        39S mitochondrial ribosomal protein L46
        1.2    8.8   4.4        6.6    6.3   0.0    3.3  4  AAA_15         AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.0   4.8e-35   2.7e-32       1     137 []      22     191 ..      22     191 .. 0.98
   2 ?   -1.8   0.0       7.3   4.1e+03      62      95 ..     246     279 ..     230     302 .. 0.61
   3 !   85.2   0.0   9.9e-27   5.6e-24       2     137 .]     340     473 ..     339     473 .. 0.83

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 4.8e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................... 79 
                 lkn+sl++ +g k++++G nGaGKStLl+++ag  +  eGe            +++   +ig+lpqepql+pe+tvre+                    
  CTQ26322.1  22 LKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDTEIEGEA-----------RPQPGIKIGYLPQEPQLNPEHTVRESveeavaevvnalkgldevya 109
                 79***************************************9...........99******************************************** PP

                 .............................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .............................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                                              + ++++e+a++ l+l++++++++     +LSgG+++rval+r+ll+kp++lllDEpt+
  CTQ26322.1 110 kyaepdadfdklaaqqgkfeeiiqahdghNLNVQLERAADALRLPDWDAKIA-----NLSGGERRRVALCRLLLEKPDMLLLDEPTN 191
                 ************************9999999999************888886.....*****************************8 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 7.3
                 EEE-SS--S-TTSBHHHHHHHTCHHHHHHHSTTG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  62 gvlpqepqlfpeltvrenesdeeiekalsklglk 95 
                 ++l+q++q   +   +e ++++ iek l+++++ 
  CTQ26322.1 246 SWLEQKDQRLAQEASQEAARRKSIEKELEWVRQG 279
                 5555554433333344444444455555555443 PP

  == domain 3  score: 85.2 bits;  conditional E-value: 9.9e-27
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG.B-HHHCCHCEEEE-SS.--S-TTSBHHHHHHHTCHHHHHHHSTTGGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlke.qeleslrkeigvlpqe.pqlfpeltvrenesdeeiekalsklglkel 97 
                 +++s+++ +g +v+i+G+nGaGKStL+++++g+++p++G+i+l    +l + ++ + +  +++++ +e +   + ++++++e+ ++++  + +++ ++ 
  CTQ26322.1 340 DDLSFSVPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGeTVKLASvDQFRDAMDNSKTVWEEvSGGLDIMKIGNTEMPSRAYVGRFNFKGVD- 437
                 899**************************************777333333365555555555555555456666666888899999999999999999. PP

                 TCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  98 kdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + ++v     +LSgG++ r+ la++l    ++lllDEpt+
  CTQ26322.1 438 QGKRV----GELSGGERGRLHLAKLLQVGGNVLLLDEPTN 473
                 77777....9*****************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   8.2e-05     0.046       4      27 ..      37      57 ..      35      80 .. 0.77
   2 !   21.6   0.0   2.9e-07   0.00016     234     303 .]     160     223 ..     155     223 .. 0.86
   3 !   17.2   0.1   6.1e-06    0.0034       2      21 ..     352     371 ..     351     387 .. 0.83
   4 ?    5.1   0.1     0.031        17     255     278 ..     462     483 ..     390     490 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.2e-05
      AAA_21  4 liGpNgsGKSnLLdaldllarldr 27
                + G Ng+GKS+LL+++ ++   d+
  CTQ26322.1 37 VLGLNGAGKSTLLRIMAGI---DT 57
                789*************988...33 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 2.9e-07
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                 +++lS G +r  al  +ll+ +   + ll+DEp n+L+ + ++ l ++l + +     v++ TH+ ++ld
  CTQ26322.1 160 IANLSGGERRRVALCRLLLEKP---DMLLLDEPTNHLDAESVAWLERFLHDFEG---TVVAITHDRYFLD 223
                 5678999999977777777766...**************999999999988877...9*******98886 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 6.1e-06
      AAA_21   2 nvliGpNgsGKSnLLdaldl 21 
                  ++iGpNg+GKS+L++ +++
  CTQ26322.1 352 VGIIGPNGAGKSTLFRMMSG 371
                 68*************98765 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.031
      AAA_21 255 lkkgsllliDEpEngLHPkllrrl 278
                    g +ll+DEp n L+ + lr l
  CTQ26322.1 462 G--GNVLLLDEPTNDLDIETLRAL 483
                 3..379***********9999876 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   3.2   3.8e-15   2.1e-12       1      79 [.     230     306 ..     230     312 .. 0.92
   2 ?    6.8   0.2     0.012       6.8       4      25 ..     516     537 ..     515     547 .. 0.89

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 3.8e-15
  ABC_tran_Xtn   1 velengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklekiekpeek 79 
                   +el++g+   ++GnYs++le+k++rl+q++++++++ k i+k+ e++++ ++   ++++ ++r  ++e l+++e ++++
    CTQ26322.1 230 LELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWVRQGAK--GRQSKGKARLARFEELNNVEYQKRN 306
                   69***********************************************998..79999**************999554 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.012
  ABC_tran_Xtn   4 engklteYkGnYseyleekeer 25 
                   ++gk++ ++Gn++ey e k++ 
    CTQ26322.1 516 DEGKVEFFEGNFTEYEEYKKRT 537
                   6799*************99976 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.034        19      27      41 ..      35      49 ..      19      54 .. 0.73
   2 !    8.5   0.0    0.0022       1.2     127     202 ..     153     222 ..      82     229 .. 0.76
   3 !   10.1   0.0   0.00069      0.39      25      42 ..     350     367 ..     322     370 .. 0.70
   4 ?    0.8   0.0      0.51   2.8e+02     136     199 ..     444     501 ..     381     519 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.034
                EEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxx RF
       SMC_N 27 taivGpNGSGKsnll 41
                  ++G NG+GKs ll
  CTQ26322.1 35 IGVLGLNGAGKSTLL 49
                4599********987 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0022
                 HHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 127 lesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreeml 202
                 l++ + ++ +LSgGe+  val  l+     ++  + llDe   +LD++ v+ + ++l+  +    ++ i++++ +l
  CTQ26322.1 153 LPDWDAKIANLSGGERRRVALCRLL----LEKPDMLLLDEPTNHLDAESVAWLERFLHDFE--GTVVAITHDRYFL 222
                 4555566779*****9877765442....44556889****************99999877..5667777776665 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00069
                 SEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlld 42 
                  +  i+GpNG+GKs l+ 
  CTQ26322.1 350 AIVGIIGPNGAGKSTLFR 367
                 46789*********9975 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.51
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislre 199
                 +LSgGe+  + la l+ +       + llDe    LD +  +++ + l e       +vis+++
  CTQ26322.1 444 ELSGGERGRLHLAKLLQV----GGNVLLLDEPTNDLDIETLRALENALLEFP--GCAMVISHDR 501
                 799999987777766433....334678999999999999999988887766..4456666665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00098      0.55       1      22 [.      34      55 ..      34      71 .. 0.80
   2 !   13.5   0.0    0.0001     0.058       2      23 ..     352     373 ..     351     395 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00098
                EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltge 22
                +++++G   +GKStL++ + g 
  CTQ26322.1 34 KIGVLGLNGAGKSTLLRIMAGI 55
                699**************99874 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 0.0001
                 EEEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgek 23 
                 v+i+G   +GKStL++ ++g++
  CTQ26322.1 352 VGIIGPNGAGKSTLFRMMSGQE 373
                 89****************9973 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0034       1.9      27      39 ..      37      49 ..      24      53 .. 0.87
   2 !   14.4   0.1   4.3e-05     0.024      22      39 ..     348     366 ..     338     370 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0034
      AAA_29 27 ltGpsGsGKSTll 39
                + G +G+GKSTll
  CTQ26322.1 37 VLGLNGAGKSTLL 49
                7899********8 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.3e-05
      AAA_29  22 kg.atlltGpsGsGKSTll 39 
                 kg ++ ++Gp+G+GKSTl+
  CTQ26322.1 348 KGaIVGIIGPNGAGKSTLF 366
                 566888***********96 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   5.9     0.036        20      24      75 ..      37      90 ..      21     312 .. 0.74
   2 !   17.2   0.0     1e-05    0.0057      19      37 ..     349     367 ..     331     370 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.036
      AAA_23 24 ItGpNGaGKTTildAiklaLygetprlsrks..grgfeksdveiesegkvkayv 75
                + G NGaGK+T+l+ +  + ++  ++ +++   + g+  +++ ++ e++v+++v
  CTQ26322.1 37 VLGLNGAGKSTLLRIMAGIDTEIEGEARPQPgiKIGYLPQEPQLNPEHTVRESV 90
                6799*********98887766655444444433556666666666665555554 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1e-05
      AAA_23  19 kgltlItGpNGaGKTTild 37 
                   ++ I+GpNGaGK+T+++
  CTQ26322.1 349 GAIVGIIGPNGAGKSTLFR 367
                 45889************97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.046        26      10      31 ..      37      58 ..      33     216 .. 0.68
   2 !   13.7   0.0    0.0001     0.058       8     103 ..     352     475 ..     348     498 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.046
      AAA_22 10 vtGesGtGKTtllrrlleqlde 31
                v G  G+GK+tllr ++  ++e
  CTQ26322.1 37 VLGLNGAGKSTLLRIMAGIDTE 58
                66999********988776543 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 0.0001
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsst..sskdllrellralglelka.........................erlssee 77 
                 + ++G+ G+GK+tl r++  q + ++   +  e +++++v+   +   +sk++++e+   l+  + +                         e    e+
  CTQ26322.1 352 VGIIGPNGAGKSTLFRMMSGQEQPDSGTITlgETVKLASVDQFRDAmdNSKTVWEEVSGGLDIMKIGntempsrayvgrfnfkgvdqgkrvgELSGGER 450
                 569*****************9875544444666666667776666678888888888887777666666666666666666666666666655555555 PP

      AAA_22  78 llealeqalraravielliiDEaqh.l 103
                  + +l++ l+  +   +l++DE  + l
  CTQ26322.1 451 GRLHLAKLLQVGGN--VLLLDEPTNdL 475
                 55666666666665..66666655555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.026        14     104     121 ..      37      54 ..      22      66 .. 0.82
   2 !   12.8   0.0   0.00015     0.081      89     129 ..     338     379 ..     318     386 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.026
                  EECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 104 lvGqSGvGKStLinallp 121
                  ++G  G+GKStL+  +++
   CTQ26322.1  37 VLGLNGAGKSTLLRIMAG 54 
                  68999********98877 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00015
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelktge 129
                   +++l+  + +  ++ ++G+ G+GKStL  ++ ++++   g 
   CTQ26322.1 338 LIDDLSFSVPKgAIVGIIGPNGAGKSTLFRMMSGQEQPDSGT 379
                  5677777776658899****************9998766555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0032       1.8      24      84 ..     154     201 ..     131     207 .. 0.67
   2 ?    2.9   0.5      0.23   1.3e+02      28      42 ..     440     453 ..     430     488 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0032
     SbcCD_C  24 kelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatl 84 
                  ++++++++lSGGe++ +a l+       l+ +      ++++++LDE  + lD+es+a l
  CTQ26322.1 154 PDWDAKIANLSGGERRRVA-LC------RLLLE------KPDMLLLDEPTNHLDAESVAWL 201
                 4578888888999983333.22......23333......5899***********9998766 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.23
     SbcCD_C  28 rssgtlSGGekqfla 42 
                 +++g+lSGGe+   +
  CTQ26322.1 440 KRVGELSGGER-GRL 453
                 67788888887.222 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.041        23      31      45 ..      37      51 ..      24      56 .. 0.87
   2 ?   -3.0   0.1       7.8   4.4e+03     149     190 ..      98     138 ..      89     151 .. 0.64
   3 !   10.2   0.0   0.00072      0.41      18      46 ..     341     369 ..     331     371 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.041
      AAA_27 31 iyGpNEAGKstalrA 45
                ++G N AGKst+lr 
  CTQ26322.1 37 VLGLNGAGKSTLLRI 51
                79**********985 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.8
      AAA_27 149 feasaGlaslrevleaLeaeadelfkprkskkrainealeel 190
                 ++a  Gl ++ + +++ +a+ d+l +++++ + +i +a++ +
  CTQ26322.1  98 VNALKGLDEVYAKYAEPDADFDKLAAQQGKFE-EIIQAHDGH 138
                 45666666666666777777777777777766.666665544 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00072
      AAA_27  18 sldfsaeeadlhliyGpNEAGKstalrAi 46 
                  l+fs  +  +  i+GpN AGKst++r +
  CTQ26322.1 341 DLSFSVPKGAIVGIIGPNGAGKSTLFRMM 369
                 57788778888889**********99866 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.019        11       5      17 ..      38      50 ..      35      57 .. 0.86
   2 !    9.1   0.0    0.0024       1.4       4      25 ..     354     379 ..     351     416 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.019
      AAA_33  5 vGlpGsGKstlae 17
                 Gl+G+GKstl++
  CTQ26322.1 38 LGLNGAGKSTLLR 50
                6**********98 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0024
      AAA_33   4 lvGlpGsGKstlaerllkklg....a 25 
                 ++G++G+GKstl + +  +++    +
  CTQ26322.1 354 IIGPNGAGKSTLFRMMSGQEQpdsgT 379
                 79**********99886665545553 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.1     0.017       9.3      29     161 ..      37     207 ..      33     260 .. 0.55
   2 ?   -1.7   0.1       5.8   3.3e+03      82     107 ..     255     281 ..     212     306 .. 0.61
   3 !    8.3   0.0    0.0049       2.7      25      63 ..     350     388 ..     337     485 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.017
      AAA_16  29 lsGesGvGKsslvrellralekd...............................................ggif....lrgkcdql.esaipysalaqa 75 
                 + G  G GKs+l+r  +  + ++                                               ++++      +++d+l  ++  +  ++qa
  CTQ26322.1  37 VLGLNGAGKSTLLRIMA-GIDTEiegearpqpgikigylpqepqlnpehtvresveeavaevvnalkgldEVYAkyaePDADFDKLaAQQGKFEEIIQA 134
                 67888888888886666.455553333555555533333333333333333333333333333333322211111111111111111111222334555 PP

      AAA_16  76 lareellrqlldeaesaeleawrekleealaavpelagaeasrllellkrllallsrderplvlvlDd.lqwadeaslqllaaLlrl 161
                  + + l  ql+++a++  l++w++k+    +          +r + +l rll      e+p  l+lD+    +d++s ++l+ +l++
  CTQ26322.1 135 HDGHNLNVQLERAADALRLPDWDAKIANLSG---------GERRRVALCRLL-----LEKPDMLLLDEpTNHLDAESVAWLERFLHD 207
                 5555555555555555555555555544444.........256666666666.....244545555541557777777777777665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 5.8
      AAA_16  82 lrqlldeaesaeleawrekleeala......a 107
                 l+q     e+++ +a r+ +e++l+       
  CTQ26322.1 255 LAQ-----EASQEAARRKSIEKELEwvrqgaK 281
                 222.....233455566666776665544332 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0049
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                  +v ++G+ G GKs+l r+   + + d g  + g++++l
  CTQ26322.1 350 AIVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGETVKL 388
                 57889************9998777776566666666666 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1    0.0046       2.6       1      89 [.      35     142 ..      35     157 .. 0.55
   2 ?    6.7   0.0     0.018        10       1      18 [.     352     369 ..     352     419 .. 0.79
   3 ?   -2.0   0.0       8.9     5e+03      31      90 ..     458     515 ..     446     521 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0046
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf........gvnlrdvakenglllevdpealdeskrldedkldklldaleenss.................alee 73 
                 I++ G  G+GK+tl +  +    ++        g++++ + +e +l  e +        + +e+ ++++++al++ ++                  +++
  CTQ26322.1  35 IGVLGLNGAGKSTLLRIMAGIDtEIegearpqpGIKIGYLPQEPQLNPEHTVR------ESVEEAVAEVVNALKGLDEvyakyaepdadfdklaaQQGK 127
                 899************99965542234333444444444443333333333333......4444444555555555554555666666666665432222 PP

      AAA_18  74 gknlvidghlaelese 89 
                  +  +i+ h ++++  
  CTQ26322.1 128 FEE-IIQAHDGHNLNV 142
                 233.666666666655 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.018
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 +++ G+ G+GK+tl +  
  CTQ26322.1 352 VGIIGPNGAGKSTLFRMM 369
                 689**********98866 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 8.9
      AAA_18  31 vakenglllevdpealdeskrldedkldklldaleenss..aleegknlvidghlaelesea 90 
                 +++ +g +l  d++    ++ ld++ l +l +al e +      +++ + +d +  + ++++
  CTQ26322.1 458 LLQVGGNVLLLDEP----TNDLDIETLRALENALLEFPGcaMVISHDRWFLDRIATHILDYQ 515
                 55555555556666....44555555555555555555555567788888888888877765 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0024       1.4      13      47 ..      16      50 ..       7      59 .. 0.83
   2 !    6.3   0.0    0.0073       4.1      18      49 ..     338     369 ..     326     381 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0024
                HHHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHH CS
        MeaB 13 peakellerllakaGraqvvGltGvPGaGkstlve 47
                p  +++l++++ +     ++G+ G+ GaGkstl+ 
  CTQ26322.1 16 PPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLR 50
                5567788888888888899*************986 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0073
                 HHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHH CS
        MeaB  18 llerllakaGraqvvGltGvPGaGkstlveal 49 
                 l++ l+ +  +   vG+ G  GaGkstl   +
  CTQ26322.1 338 LIDDLSFSVPKGAIVGIIGPNGAGKSTLFRMM 369
                 66777777788899*************98655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.12        68       2      21 ..      35      54 ..      34      70 .. 0.80
   2 !   10.4   0.0     0.001      0.58       4      47 ..     354     402 ..     351     416 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.12
      AAA_28  2 ivitGgestGKTtlleaLaa 21
                i ++G  ++GK+tll+ +a 
  CTQ26322.1 35 IGVLGLNGAGKSTLLRIMAG 54
                6678999*********9985 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.001
      AAA_28   4 itGgestGKTtlleaLaar.....gypvvpEaareileeklakgedalp 47 
                 i+G+ ++GK+tl + ++ +     g+ ++ E++     ++ ++  d+++
  CTQ26322.1 354 IIGPNGAGKSTLFRMMSGQeqpdsGTITLGETVKLASVDQFRDAMDNSK 402
                 9****************44457779999999999888888877666555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.033        18       3      22 ..      33      52 ..      31      69 .. 0.85
   2 !    8.6   0.0    0.0025       1.4       3      22 ..     350     369 ..     348     407 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.033
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                +ki + G +g+GK+tl++ +
  CTQ26322.1 33 AKIGVLGLNGAGKSTLLRIM 52
                799*************9877 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0025
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                 + + i+Gp+g+GK+tl +++
  CTQ26322.1 350 AIVGIIGPNGAGKSTLFRMM 369
                 5688************9999 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0     0.002       1.1      15      34 ..      33      52 ..      19      70 .. 0.82
   2 ?    3.6   0.0     0.072        40      19      51 ..     354     387 ..     341     397 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.002
                EEEEEEESTTSSHHHHHHHH CS
         Arf 15 lrilllGLDnaGKtTilkkl 34
                ++i +lGL +aGK+T+l  +
  CTQ26322.1 33 AKIGVLGLNGAGKSTLLRIM 52
                7899************9865 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.072
                 EEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEE CS
         Arf  19 llGLDnaGKtTilkklkleelvt.tvPTigfnve 51 
                 ++G  +aGK+T+  +++ +e+ +  + T+g +v+
  CTQ26322.1 354 IIGPNGAGKSTLFRMMSGQEQPDsGTITLGETVK 387
                 78999*********99877764425566666665 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1      0.14        77       1      18 [.      34      51 ..      34      72 .. 0.85
   2 ?    9.2   0.0    0.0024       1.3       4      47 ..     354     397 ..     352     409 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.14
                EEEEESSTTSSHHHHHHC CS
         Roc  1 KvvlvGdsgvGKtsllkr 18
                K+ ++G +g+GK++ll+ 
  CTQ26322.1 34 KIGVLGLNGAGKSTLLRI 51
                8999***********974 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0024
                 EESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGC CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgv 47 
                 ++G +g+GK++l++ +  ++  ++ + t+g +++  +v +++  
  CTQ26322.1 354 IIGPNGAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDA 397
                 89***********9999888888889999999988877666543 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.11        63       1      22 [.      35      56 ..      35     144 .. 0.90
   2 ?   -1.8   0.0       5.1   2.8e+03       7       7 ..     284     284 ..     242     340 .. 0.60
   3 ?    8.2   0.0    0.0042       2.3       1      58 [.     352     407 ..     352     439 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.11
                EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlged 22
                i v+G   +GKS++l  + g d
  CTQ26322.1 35 IGVLGLNGAGKSTLLRIMAGID 56
                7899999********9888877 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.1
                 T CS
   Dynamin_N   7 q 7  
                 q
  CTQ26322.1 284 Q 284
                 1 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0042
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---CCS...SSEEEE CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeaseravkeelkek 58 
                 + ++G   +GKS++   + g++  p + ++t   +++l   ++ +   + ++++++e+
  CTQ26322.1 352 VGIIGPNGAGKSTLFRMMSGQE-QPDSGTITLGETVKLASVDQFRDA-MDNSKTVWEE 407
                 6799******************.999999999999999998888844.4555555555 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0         1   5.9e+02      11      34 ..      29      52 ..      24      58 .. 0.84
   2 ?   11.1   0.0    0.0004      0.22       6      65 ..     341     400 ..     334     422 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1
                 EBTT-EEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 11 ivqGqrtlipgafgvGktvisqsl 34
                 +  G +++++g +g Gk+++++ +
   CTQ26322.1 29 FFPGAKIGVLGLNGAGKSTLLRIM 52
                 56799**************98765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0004
                  HHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEEHHHHHHHHHHCHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   6 DalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvgiGergnevaevleefpe 65 
                  D+ f++ +G  ++i+g +g Gk+++ +++s q + d+ +i  g   +  +v ++ + + +
   CTQ26322.1 341 DLSFSVPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDN 400
                  6779999*************************8888788888777777777777766665 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.059        33       4      20 ..      36      52 ..      33      63 .. 0.83
   2 ?    7.0   0.0    0.0072         4       2      36 ..     351     385 ..     350     412 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.059
                EEEESTTCCHHHHHHHH CS
        cobW  4 vltGflGsGKTtLlnhl 20
                ++ G  G+GK+tLl+ +
  CTQ26322.1 36 GVLGLNGAGKSTLLRIM 52
                678999********865 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0072
                 EEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS- CS
        cobW   2 vtvltGflGsGKTtLlnhllenraglklavivNef 36 
                 ++++ G+ G+GK+tL + +  +++  +  + ++e 
  CTQ26322.1 351 IVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGET 385
                 57899***********9998655555555555555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.17        97      23      38 ..      35      50 ..      21      62 .. 0.86
   2 ?   -0.9   0.0       1.4   7.6e+02      83     110 ..     160     187 ..     138     199 .. 0.79
   3 ?    7.5   0.0    0.0036         2      18      39 ..     347     368 ..     335     377 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.17
                EEEEESTTSSHHHHHH CS
      NB-ARC 23 valvGmgGvGKttlak 38
                +++ G  G GK+tl++
  CTQ26322.1 35 IGVLGLNGAGKSTLLR 50
                7999**********86 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.4
                 SSSS-STTSHHHHHHHHCCCTTEEEEEE CS
      NB-ARC  83 leekeeveslkrklvrlLltkrfllvlD 110
                 + + + +e +   l+rlLl+k  +l+lD
  CTQ26322.1 160 IANLSGGERRRVALCRLLLEKPDMLLLD 187
                 4444555558899********9999999 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0036
                 SCSEEEEEEESTTSSHHHHHHH CS
      NB-ARC  18 lqslvvalvGmgGvGKttlakq 39 
                 ++  +v++ G  G GK+tl++ 
  CTQ26322.1 347 PKGAIVGIIGPNGAGKSTLFRM 368
                 55589**************975 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.27   1.5e+02      20      50 ..      16      49 ..       6      67 .. 0.78
   2 ?   -0.2   0.0       1.1   6.3e+02     158     188 ..     187     217 ..     182     219 .. 0.82
   3 ?    5.1   0.0     0.026        15      30      49 ..     346     365 ..     336     371 .. 0.89
   4 ?   -1.5   0.0       2.8   1.6e+03      99     147 ..     449     497 ..     418     497 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.27
      AAA_25 20 pprrwlvkg....llpagelallaGapgtGKttla 50
                pp+r+++k+    + p g+ + + G  g+GK+tl+
  CTQ26322.1 16 PPKRHILKNislsFFP-GAKIGVLGLNGAGKSTLL 49
                6666666665554544.7888889*********97 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
      AAA_25 158 densnsdvgalvealeriarrtgaavllvhH 188
                 de  n+  ++ v++ler+ + +  +v+++ H
  CTQ26322.1 187 DEPTNHLDAESVAWLERFLHDFEGTVVAITH 217
                 5555666678899****************99 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.026
      AAA_25  30 lpagelallaGapgtGKttl 49 
                 +p+g+++ ++G+ g+GK+tl
  CTQ26322.1 346 VPKGAIVGIIGPNGAGKSTL 365
                 6999***************8 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 2.8
      AAA_25  99 ddarllvldlagv.eslpLfakdrggtlltadvdaleaaieevegvrlvv 147
                 +++rl++ +l +v +++ L+++ +++  + + ++ale+a+ e +g ++v+
  CTQ26322.1 449 ERGRLHLAKLLQVgGNVLLLDEPTNDLDI-ETLRALENALLEFPGCAMVI 497
                 56889999999998888777666666666.55689999999999999997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.058        32      23      44 ..      37      58 ..      32      67 .. 0.83
   2 ?    5.8   0.0     0.019        10      20      40 ..     351     371 ..     345     405 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.058
      AAA_30 23 ltGpAGtGKttalkalreawea 44
                + G  G+GK+t+l+ ++ + ++
  CTQ26322.1 37 VLGLNGAGKSTLLRIMAGIDTE 58
                57999********998877665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.019
      AAA_30  20 vavltGpAGtGKttalkalre 40 
                 ++ + Gp G+GK+t+ + +  
  CTQ26322.1 351 IVGIIGPNGAGKSTLFRMMSG 371
                 77899**********998754 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.048        27      26      54 ..      33      61 ..      23      71 .. 0.86
   2 ?    5.4   0.0     0.012       6.9      22      55 ..     346     379 ..     341     406 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.048
        DLIC 26 ksvlvlGedgsGkttliaklqGveeekkG 54
                 ++ vlG +g+Gk+tl+  + G++ e  G
  CTQ26322.1 33 AKIGVLGLNGAGKSTLLRIMAGIDTEIEG 61
                45789******************998777 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.012
        DLIC  22 lPsgksvlvlGedgsGkttliaklqGveeekkGr 55 
                 +P g  v ++G +g+Gk+tl   + G e++  G 
  CTQ26322.1 346 VPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGT 379
                 68888999*********************99886 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.48   2.7e+02       6      22 ..      36      52 ..      33      73 .. 0.87
   2 ?   -1.5   0.0       4.4   2.5e+03      57      81 ..     178     197 ..     129     216 .. 0.63
   3 ?    6.6   0.0     0.013       7.3       3      27 ..     350     374 ..     348     410 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.48
      AAA_14  6 vitGaRrvGKTtllkql 22
                 + G+  +GK+tll+ +
  CTQ26322.1 36 GVLGLNGAGKSTLLRIM 52
                588999*******9765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.4
      AAA_14  57 leklkeekktylflDEiqevpewek 81 
                 l     ek  +l+lDE  +  ++e+
  CTQ26322.1 178 L-----EKPDMLLLDEPTNHLDAES 197
                 2.....3668899999888755554 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.013
      AAA_14   3 kilvitGaRrvGKTtllkqlikell 27 
                  i+ i G+  +GK+tl + +  ++ 
  CTQ26322.1 350 AIVGIIGPNGAGKSTLFRMMSGQEQ 374
                 6899************887765554 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.16        90       6      22 ..      37      53 ..      33      59 .. 0.83
   2 ?    5.9   0.0     0.016       8.7       5      43 ..     353     397 ..     350     425 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.16
                EEESTTSSHHHHHHHHH CS
       SRP54  6 lvGlqGaGKTttlaKLa 22
                ++Gl+GaGK t l  +a
  CTQ26322.1 37 VLGLNGAGKSTLLRIMA 53
                79*********987666 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.016
                 EEEESTTSSHHHHHHHHHHHHHHT......TS-EEEEEESTSSTT CS
       SRP54   5 llvGlqGaGKTttlaKLaallkke......gkkvllvaaDtfRaa 43 
                  ++G++GaGK t    ++ + + +      g++v l+++D fR a
  CTQ26322.1 353 GIIGPNGAGKSTLFRMMSGQEQPDsgtitlGETVKLASVDQFRDA 397
                 589**********99999776655444555677777778877765 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0019         1      21      62 ..      87     128 ..      83     147 .. 0.87
   2 ?    3.7   6.6      0.11        64      55     109 ..     248     302 ..     245     312 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0019
  Jnk-SapK_ap_N  21 eevvkgLmPkvVkvLElLeslasrneeeeaeleelreeleqL 62 
                    +e+v++ +  vV+ L  L++++++++e +a+ ++l ++  ++
     CTQ26322.1  87 RESVEEAVAEVVNALKGLDEVYAKYAEPDADFDKLAAQQGKF 128
                    589****************************99998776555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.11
  Jnk-SapK_ap_N  55 lreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrele 109
                    l+++ ++L +e ++e++ rk  e+ele + +  ++++++ ++++++ ee n+   
     CTQ26322.1 248 LEQKDQRLAQEASQEAARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNNVEY 302
                    6778899***************************************999876544 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0072         4      23      42 ..      39      58 ..      36      91 .. 0.82
   2 ?    6.4   0.0    0.0051       2.8      21      41 ..     354     374 ..     352     406 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0072
      AAA_13 23 GwNGaGKTtLSrllrslelg 42
                G NGaGK+tL r+++ + ++
  CTQ26322.1 39 GLNGAGKSTLLRIMAGIDTE 58
                99************998664 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0051
      AAA_13  21 iYGwNGaGKTtLSrllrslel 41 
                 i G NGaGK+tL r+++ +e+
  CTQ26322.1 354 IIGPNGAGKSTLFRMMSGQEQ 374
                 569************999875 PP

>> MRP-L46  39S mitochondrial ribosomal protein L46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.9   0.00058      0.32      21      88 ..     239     299 ..     236     322 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00058
                 HHHHHH....HHHHHHHHHHT----HHHHTTHHHHHHHHHHH---------.....----HHHHHHHH CS
     MRP-L46  21 pfEkefYkYqkellerlelefskyfyfkkgtlaelkfkelkkklterdeevardigkpdlrqerernd 88 
                 p+E ++  + ++  +rl++e s++ +++k+  +el++   +++ + r+     ++gk +l+  +e n 
  CTQ26322.1 239 PWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEW--VRQGAKGRQ-----SKGKARLARFEELNN 299
                 79999999*****************************..555555555.....233333333333222 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.2      0.31   1.7e+02      29      43 ..      38      52 ..      22      59 .. 0.85
   2 ?   -2.5   0.0       5.7   3.2e+03     238     336 ..      90     193 ..      74     193 .. 0.47
   3 ?    6.3   0.0     0.012       6.6      27      43 ..     353     369 ..     338     377 .. 0.85
   4 ?   -0.8   0.0       1.7   9.5e+02     185     233 ..     482     530 ..     394     553 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.31
      AAA_15 29 iGkNnsGKSsileal 43
                 G N++GKS++l+++
  CTQ26322.1 38 LGLNGAGKSTLLRIM 52
                599*********986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.7
      AAA_15 238 lteklkeiqeklkeidkklaeelk............kilkkkidkikkfnykgkkneeieik........ddeelplnknGsGvqrllllillileaek 316
                 ++e+  e+ ++lk +d+ +a+ ++             +++++i+  +  n +++       +         d + ++++ + G +r + l  l+le+  
  CTQ26322.1  90 VEEAVAEVVNALKGLDEVYAKYAEpdadfdklaaqqGKFEEIIQAHDGHNLNVQL------EraadalrlPDWDAKIANLSGGERRRVALCRLLLEKP- 181
                 5555555555555555555444445544443333332233333332222222222......1333334555555666666666666655444333332. PP

      AAA_15 317 kdekeeknvilliEEPEahL 336
                         + ll++EP +hL
  CTQ26322.1 182 --------DMLLLDEPTNHL 193
                 ........557777776665 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.012
      AAA_15  27 vliGkNnsGKSsileal 43 
                  +iG+N++GKS++ +++
  CTQ26322.1 353 GIIGPNGAGKSTLFRMM 369
                 59**********98775 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.7
      AAA_15 185 elknvlksaiiklllisakRnvsdedsekkssllgklkekileealqek 233
                  l+n l ++  +  +is +R++ d   +++ ++ ++ k +++e +  e+
  CTQ26322.1 482 ALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEY 530
                 6788999999999999999999999999999999988888888654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 3703.17
//
Query:       CTQ26323.1  [L=645]
Description: lytic murein transglycosylase, soluble [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-33  114.3   0.1    4.2e-33  113.5   0.1    1.5  1  SLT          Transglycosylase SLT domain
    2.8e-23   81.8   6.3    2.8e-23   81.8   6.3    3.4  2  SLT_L        Soluble lytic murein transglycosylase L domain
    0.00052   19.7   0.0     0.0019   17.9   0.0    1.9  1  Cucumo_coat  Cucumovirus coat protein
     0.0014   19.1   2.7      0.043   14.3   0.3    3.7  3  TPR_19       Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.24   12.1   1.9        1.2    9.9   1.9    2.4  1  TPR_4        Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.1   1.2e-36   4.2e-33       8     110 ..     489     595 ..     482     602 .. 0.93

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 1.2e-36
                 HHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT....-SHHHHCSHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH-HHHHH CS
         SLT   8 kkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvk....lsedelldPeknisagakyLkslykqyngslllalaAYNaGegtvk 102
                 + + +++s+++aia++ES++npk+ s++ga GLmQimp ta++++ +++    +++++lldPe+ni++g++yL+ +y+q++++++ a aAYNaG+g+v+
  CTQ26323.1 489 SGKDIPQSYAMAIARQESAWNPKVRSPVGASGLMQIMPGTATHTVSMFSipgySGPSQLLDPETNINIGTSYLQYVYQQFGNNRIYASAAYNAGPGRVR 587
                 567899*****************************************99************************************************** PP

                 HTTHSSHH CS
         SLT 103 kakkevkk 110
                  +++++  
  CTQ26323.1 588 SWQGNSAG 595
                 ***99865 PP

>> SLT_L  Soluble lytic murein transglycosylase L domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   1.8     0.079   2.8e+02      17      51 ..     338     378 ..     335     382 .. 0.63
   2 !   81.8   6.3   7.9e-27   2.8e-23       3      68 .]     407     472 ..     405     472 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.079
       SLT_L  17 lgrdaeArreWrhllkrlskee......qlalakyAkdqgW 51 
                 l ++a+ + eWr++++ l  e       q+ l  + +++g 
  CTQ26323.1 338 LPMEAKEKDEWRYWQADLLLERgrdeeaQAILRSLMQQRGF 378
                 66777788999999988744433333336666666666665 PP

  == domain 2  score: 81.8 bits;  conditional E-value: 7.9e-27
       SLT_L   3 aqapalarirELralgrdaeArreWrhllkrlskeeqlalakyAkdqgWhdlaveatiqakaWDdL 68 
                 a  p++ar+rEL+++++d+ Ar+eW +l+++ +k +q++la+yA dq+W+dl+v+ati++k+WD+L
  CTQ26323.1 407 ASGPEMARVRELMYWNMDNTARTEWANLVTSRTKSQQAQLARYAFDQHWWDLSVQATIAGKLWDQL 472
                 6679************************************************************97 PP

>> Cucumo_coat  Cucumovirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.4e-07    0.0019      80     132 ..     153     205 ..     138     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.4e-07
                  SEEEEEEEE-CTTTS-SSSHHHHHSTSS--EEEE-BSTTTSS-S.EEEEEGCC CS
  Cucumo_coat  80 eqlWltvkklPkvsdllveaisamdGlsnvlvqqrallavdannvklltdlsa 132
                  ++lWlt+k+ P ++++l+ a+   +   +     r  la++a n++l+  l+ 
   CTQ26323.1 153 KELWLTGKNQPGACEPLFSAWRDSGQQDPLAYLERIRLAMKAGNIGLVKSLAQ 205
                  689********************998888888899************999864 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.28     1e+03      17      56 ..     172     212 ..     164     222 .. 0.71
   2 !   14.3   0.3   1.2e-05     0.043      21      55 ..     342     376 ..     335     384 .. 0.87
   3 ?    0.9   0.0      0.19   6.7e+02      40      65 ..     394     419 ..     394     419 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.28
      TPR_19  17 alqedpk.naearllLAeallalgqldeAealLdalpeedp 56 
                 a+ ++ + ++ a l  +++ +++g++   + l ++ p+ ++
  CTQ26323.1 172 AWRDSGQqDPLAYLERIRLAMKAGNIGLVKSLAQQMPANYQ 212
                 56666663666666779999999998766666666666666 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.2e-05
      TPR_19  21 dpknaearllLAeallalgqldeAealLdalpeed 55 
                 + + +e r++ A++ll+ g+ +eA+a+L  l+++ 
  CTQ26323.1 342 AKEKDEWRYWQADLLLERGRDEEAQAILRSLMQQR 376
                 5668899***********************99886 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.19
      TPR_19  40 qldeAealLdalpeedpddaryasLl 65 
                 ++d+A  ++d+++++ p  ar++ L+
  CTQ26323.1 394 RIDKASGTIDPALASGPEMARVRELM 419
                 68***************999999997 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.9   0.00035       1.2       4      25 ..     349     370 ..     348     371 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00035
       TPR_4   4 llaLArallalGdldeAralle 25 
                 ++++A +ll++G+ +eA+a+l+
  CTQ26323.1 349 RYWQADLLLERGRDEEAQAILR 370
                 799******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 4808.50
//
Query:       CTQ26324.1  [L=109]
Description: DNA-binding transcriptional repressor, tryptophan-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-28   98.4   0.1    2.2e-28   98.2   0.1    1.1  1  Trp_repressor  Trp repressor protein
  ------ inclusion threshold ------
       0.09   12.7   0.0       0.14   12.0   0.0    1.3  1  HTH_5          Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.1   2.5e-32   2.2e-28       1      87 [.      17     103 ..      17     104 .. 0.98

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 2.5e-32
  Trp_repressor   1 eeldallelilkleneeeleellelllTpdErealaqRlqvvkeLLkeelsqreIaeelgvSiAtItRvsrsLktgsdeykavLkrl 87 
                    +e+  ++ l++++ +e+ +  ll+l+lTpdEreal++R+++++eLL++e+sqre+++elg++iAtItR+s+sLk+++ e +++L++ 
     CTQ26324.1  17 QEWLRFVALLQQAYAEDLHLPLLQLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLKSAPVELRQWLEQT 103
                    689*********************************************************************************986 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.6e-05      0.14       3      28 ..      53      78 ..      52      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.6e-05
                HHHHHHHHHTTSSEEHHHHHHHHTS- CS
       HTH_5  3 tRlkILklLaegelcvcelaeelgls 28
                tR++I+  L +ge++  el +elg  
  CTQ26324.1 53 TRVRIIEELLRGEMSQRELKNELGAG 78
                9********************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.28s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 801.02
//
Query:       CTQ26325.1  [L=171]
Description: thiamin metabolism associated protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-52  177.4   0.0    2.1e-52  177.2   0.0    1.0  1  NTPase_I-T  Protein of unknown function DUF84
  ------ inclusion threshold ------
      0.059   13.1   0.0      0.089   12.5   0.0    1.2  1  Phage_tube  Phage tail tube protein FII


Domain annotation for each model (and alignments):
>> NTPase_I-T  Protein of unknown function DUF84
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.2   0.0   2.4e-56   2.1e-52       1     162 [.       7     165 ..       7     166 .. 0.97

  Alignments for each domain:
  == domain 1  score: 177.2 bits;  conditional E-value: 2.4e-56
                 S---HHHHHHHHHHHHHHCTT..EEEEEEE---SS-SS-BSHHHHHHHHHHHHHHHHHHSTTSSEEEEEEEEEET....TEEEEEE.EEEESS-EEEEE CS
  NTPase_I-T   1 gSkNpvKveAvkeafeklfkd..vevegvsvpsgvsdqPmgdeetlkGAinRaknaleaaeeadygvGlEgGveeleeklldvawaavvdkegrvsvgr 97 
                 +++Np+K++A+ +af+++f +  +++e+v+v+sgv++qP+g+eet++GA+nR++na+ a+++ad++v++E+G+++      +++w+++ ++ ++++ +r
  CTQ26325.1   7 ATTNPAKIQAILQAFDEIFGEgsCHIESVAVESGVPEQPFGSEETRAGARNRVANARLAQPNADFWVAIEAGIDD----DSTFSWVVIESA-SQRGEAR 100
                 69******************99999************************************************88....789****88888.899**** PP

                 ---EE--HHHHHHHCTT--HHHHHHHHHTHCCHHHTTHHHHHHTTTSS-HHHHHHHHHHHHTHHH CS
  NTPase_I-T  98 sasfelPeevveevkegeelgevmdelfgtenikqkeGaigllTkglvtRedlyeqavilAlipf 162
                 sa+++lP+ ++e+v++ge lg+vm++++g ++i++keGaig++T g++tR+++y+qav+lAl pf
  CTQ26325.1 101 SATLPLPDVILEQVRAGEALGPVMSQYTGIDQIGRKEGAIGVFTGGRLTRSSVYHQAVVLALSPF 165
                 ****************************************************************9 PP

>> Phage_tube  Phage tail tube protein FII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     1e-05     0.089       9      50 ..      88     129 ..      85     136 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1e-05
  Phage_tube   9 vyvdgnsylGrveevtlPkltrkteeyrggGmagevevdlgg 50 
                 v++++ s+ G++++ tlP   + +e++r+g   g+v  + +g
  CTQ26325.1  88 VVIESASQRGEARSATLPLPDVILEQVRAGEALGPVMSQYTG 129
                 678999******************************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1318.86
//
Query:       CTQ26326.1  [L=215]
Description: phosphoglyceromutase 2, co-factor independent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-56  191.1   1.5    1.8e-56  190.9   1.5    1.0  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.9   1.5     1e-60   1.8e-56       1     191 [.       4     194 ..       4     197 .. 0.98

  Alignments for each domain:
  == domain 1  score: 190.9 bits;  conditional E-value: 1e-60
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..H CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidaiysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeype 99 
                 +yLvRHGet+wnae+r+qg++d+pLt++G++qA +++er +  +i++i++S+l R+r+Tae+iaea+g++v+ d++LrE+d+G++e+++ +++ ee + 
  CTQ26326.1   4 VYLVRHGETQWNAERRIQGQSDSPLTAHGERQAWQVGERARTLGITHIITSDLGRTRRTAEIIAEACGCSVIADARLRELDMGVLEKRHIDSLSEEEEG 102
                 69************************************************************************************************* PP

                 SHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS-EEEEEE CS
  His_Phos_1 100 eleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpleelrrleldnaslsvlefdeggwrlvrl 191
                 + ++  ++++d r+p+gEs++++ +R++aal   ++  +g + l+VsHg ++ +l++++lglp  + rrl+l n+s+s+++++++ w    +
  CTQ26326.1 103 WRRQLVNGTPDGRIPQGESMQELSERMHAALASCLELPAGSRPLLVSHGIALGCLVSTILGLPAYAERRLRLRNCSISRVDYQQSPWLASGW 194
                 ************************************************************************************99987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1580.34
//
Query:       CTQ26327.1  [L=289]
Description: DNA-binding transcriptional activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-19   70.3   2.1    2.5e-19   69.3   2.1    1.5  1  HTH_18     Helix-turn-helix domain
    1.2e-18   67.9   0.0    1.6e-18   67.5   0.0    1.1  1  GyrI-like  GyrI-like small molecule binding domain
    4.6e-15   55.3   0.1    1.7e-08   34.3   0.2    2.5  2  HTH_AraC   Bacterial regulatory helix-turn-helix proteins, Ar
    2.1e-09   37.7   0.0    2.8e-09   37.3   0.0    1.2  1  Cass2      Integron-associated effector binding protein


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   2.1   5.6e-23   2.5e-19       1      80 [.      27     105 ..      27     106 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 5.6e-23
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +aa++g+s ++Lqr+fk+v+g    +y+r++Rl +   +L+  t++++ +iAl++ F+++++F+raf+k f +tP+ yrr
  CTQ26327.1  27 VAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALR-LTARPILDIALQYRFDSQQTFTRAFKKQFSLTPALYRR 105
                 599*************************************5.7************************************8 PP

>> GyrI-like  GyrI-like small molecule binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   3.5e-22   1.6e-18       2     155 .]     127     288 ..     126     288 .. 0.92

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 3.5e-22
                 CEEEEEE--EEEEEEEEEEEHCCCHHHHHHHHHHHHHHHHHHCTT...--SSEEEEEEEEE-..STTCCCEEEEEEEECCCCCCGBTTSEEEEE-SEEE CS
   GyrI-like   2 eveivelpafrvvgirhrgdyneeggipklweelyawaseiklsn...avspligvssdepe..etedeelkydigvtveirvegpeglefleipagey 95 
                 + e+++lp+++++g+++ ++++ e+ i+++ +++  +++   l n    +++l+g+   +p   +++++e+ y ++ t e +    ++ + +++++gey
  CTQ26327.1 127 KHEFITLPPTQLLGVTQSYTCKLEE-ISDFRNQMRVQFWRDFLGNspsIPPVLYGLHEPRPSleKDDEQEVFYTTALTPEMANGHLQHAHPVTLEGGEY 224
                 5799*******************99.******************9*****************977777777777777777666888999********** PP

                 EEEEEECEGGGHHHHHHHHHHTHHHHTT-EEEESEEEEEEECCCTS....SCGCEEEEEEEEEC CS
   GyrI-like  96 AvfrhkGpyddlqatyaklygewlpesgyerrdgpsiEiYlsdpre....reeelkteiyipvk 155
                 ++f+++G   +lq+++ ++yg+++p  ++ rr g +iE+ +++        + +l++e+ ip++
  CTQ26327.1 225 VMFTYEGLGTGLQEFILTVYGTCMPMLNLTRRKGLDIERFYPEDESrdqaTPIQLRCEYLIPIR 288
                 **************************************998887667899999*********96 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.4e-07    0.0015       4      42 .]      17      55 ..      14      55 .. 0.93
   2 !   34.3   0.2   3.9e-12   1.7e-08      10      42 .]      72     105 ..      66     105 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.4e-07
                CCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  4 nlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42
                +l+++l+++++A+ +g+S  +++r Fk +tG  + +y++
  CTQ26327.1 17 HLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIR 55
                899****************************99999985 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 3.9e-12
                 -HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  10 tiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                  i diA ++ f S+++F+r+Fkk++  tP  yr+
  CTQ26327.1  72 PILDIALQYRFdSQQTFTRAFKKQFSLTPALYRR 105
                 699*****************************96 PP

>> Cass2  Integron-associated effector binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   6.3e-13   2.8e-09       3     149 .]     131     287 ..     129     287 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 6.3e-13
                 EEE--EEEEEEEEETTCCCCH...HHHHHHHHHHHHHHHCTT.SBSTEEEEEEEC-TT..-CCGEEE.EEEEEE-TT.SSS-TT-EEEEE--EEEEEEE CS
       Cass2   3 velpeftvaGiryegskeeedlnkeigklwreflekgrlkki.kkdkrvfgiyhdyes..eenkfsy.yagvevpsd.sevpeglvkkeiPggkYavft 96 
                 ++lp+  ++G+    + + e++++  +++  +f++++ l +  +++  ++g++++++s  ++++ ++ y+++ +p++      +   ++++gg+Y++ft
  CTQ26327.1 131 ITLPPTQLLGVTQSYTCKLEEISDFRNQMRVQFWRDF-LGNSpSIPPVLYGLHEPRPSleKDDEQEVfYTTALTPEMaNGHLQHAHPVTLEGGEYVMFT 228
                 7899999999999999999985555555555555555.444446689***********98555555557777777775666677899************ PP

                 EESSSTT-HHHHHHHHHHCHCCHCTEEE-SSEEEEEE...STTHHH......TEEEEEEEEE CS
       Cass2  97 iegdfeedlaeaweaiygellpnsnyerrggpdfEvy...keepae......kseielyIPv 149
                  eg     l+e++ ++yg+ +p  n++rr+g d+E     +  +++      + + e+ IP+
  CTQ26327.1 229 YEGLGTG-LQEFILTVYGTCMPMLNLTRRKGLDIERFypeD--ESRdqatpiQLRCEYLIPI 287
                 **88666.***************************987542..3335688999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2247.11
//
Query:       CTQ26328.1  [L=157]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-59  199.0   0.0    2.8e-59  198.8   0.0    1.0  1  CreA      CreA protein


Domain annotation for each model (and alignments):
>> CreA  CreA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.8   0.0   1.6e-63   2.8e-59       1     131 []      24     155 ..      24     155 .. 0.98

  Alignments for each domain:
  == domain 1  score: 198.8 bits;  conditional E-value: 1.6e-63
        CreA   1 vgevstefkllgandkivvealdDpkvegvtcyvsrakkglikgalglaedpsdasiacrqtgpitlkekikks.kkgeevfkesksllfKslkvvRiy 98 
                 +g+v+t+fk+lg+++kivvea+dDp+v++vtcy+srak+g+ikg lglaed+sda+i+c+q+gpi+l++kik++ ++g++vf++++sl+fK+l+vvR+y
  CTQ26328.1  24 IGSVDTVFKWLGPDHKIVVEAFDDPDVQNVTCYISRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELTDKIKNGkSQGDVVFQKRTSLVFKKLQVVRFY 122
                 89**********************************************************************996799********************* PP

        CreA  99 DkkrntlvYlvysdkliegspknsvstvpllkt 131
                 D+krn+lvYl+ysdk+++gspkn++s+vp++++
  CTQ26328.1 123 DAKRNALVYLTYSDKVVDGSPKNAISAVPIMPW 155
                 ******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1242.96
//
Query:       CTQ26329.1  [L=229]
Description: DNA-binding response regulator in two-component regulatory system with CreC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-26   91.3   0.0    6.4e-26   90.7   0.0    1.3  1  Response_reg  Response regulator receiver domain
      2e-23   82.3   0.0    3.5e-23   81.5   0.0    1.4  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
     0.0033   17.3   0.0      0.064   13.2   0.0    2.8  3  HTH_11        HTH domain
  ------ inclusion threshold ------
      0.061   13.7   0.0       0.52   10.7   0.0    2.0  2  FleQ          Flagellar regulatory protein FleQ


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   1.4e-29   6.4e-26       1     111 [.       6     115 ..       6     116 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 1.4e-29
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   + +v+D++ +++ l  +l++eg+ +v ++  g  ale + ++++d+ +lD+ +p+++G+el++++ ++ p lpv++lta+s+e d+  +l++gadd+
    CTQ26329.1   6 IWLVEDEQSIADTLVYMLQQEGF-QVSVFGRGLPALEAAAHQAPDVAILDVGLPDISGFELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDY 101
                   679********************.************************************************************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   ++Kpf+p+e+++++
    CTQ26329.1 102 IAKPFSPREVCARV 115
                   *********99988 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   7.8e-27   3.5e-23       1      77 []     150     226 ..     150     226 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 7.8e-27
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  g++++lt+ ef lL++Ll+ pgrv+sr++L+e vw + +++ drtvd+hi++LR kL++ + ++  I t+rg+GY l
   CTQ26329.1 150 GQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVWIDAWESLDRTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226
                  799*********************************************************888899*********86 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.87   3.9e+03      15      25 ..      59      69 ..      57      69 .. 0.84
   2 ?    0.1   0.0      0.18   8.1e+02       4      23 ..     161     181 ..     159     183 .. 0.87
   3 !   13.2   0.0   1.4e-05     0.064      30      54 ..     193     224 ..     192     225 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.87
      HTH_11 15 pisgeeLAeeL 25
                +isg eL ++L
  CTQ26329.1 59 DISGFELCRRL 69
                59*****9987 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.18
      HTH_11   4 qilelLleargp.isgeeLAe 23 
                  +l+ Ll+a g  +s ++L+e
  CTQ26329.1 161 LLLKTLLHAPGRvFSRQQLME 181
                 5899999*****99*999987 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 1.4e-05
      HTH_11  30 rtvrrdIkaLeelg.......vpIesepgrGY 54 
                 rtv  +Ik+L++++       +pI   +g GY
  CTQ26329.1 193 RTVDTHIKTLRAKLravnpekAPINTHRGMGY 224
                 9******************************* PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00012      0.52       1      81 [.       5      87 ..       5      98 .. 0.78
   2 ?    0.6   0.0      0.16   7.1e+02      56      96 ..     115     154 ..     108     165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
        FleQ  1 kiLvidddaerrrdletiLeFlgeeveavsseel.saaleesssealavilgsvs.sleealealaekdphlPvlllgesdea 81
                +i +++d+++ ++ l   L+  g +v ++++     +a+++++ ++ ++  g  + s  e++++l++++p lPvl l+ ++++
  CTQ26329.1  5 RIWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPaLEAAAHQAPDVAILDVGLPDiSGFELCRRLLTRYPALPVLFLTARSDE 87
                58899999999999999999999999999988665444444445555555555555699******************998887 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.16
        FleQ  56 leealealaekdphlPvlllgesdeaeelanvigelelPln 96 
                 +++ l++l++ +   Pv+ +ge   + e a  i+   +Pln
  CTQ26329.1 115 VRTVLRRLQKFAAPSPVVRVGEFVLD-EQAAAISWFGQPLN 154
                 567889999999999******99999.88888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1950.60
//
Query:       CTQ26330.1  [L=474]
Description: sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulon [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-21   77.5   0.0    1.7e-21   76.8   0.0    1.3  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    3.6e-12   46.1   0.3    1.2e-11   44.4   0.3    1.9  1  HisKA        His Kinase A (phospho-acceptor) domain
    1.3e-07   31.7   0.0    3.9e-07   30.1   0.0    1.7  2  dCache_1     Cache domain
      2e-06   27.6   0.0    3.5e-06   26.8   0.0    1.3  1  dCache_3     Double sensory domain of two-component sensor ki
    0.00014   22.0   0.2    0.00037   20.6   0.2    1.7  1  sCache_3_2   Single cache domain 3
    0.00025   21.4   2.1     0.0012   19.2   0.0    3.1  4  HAMP         HAMP domain
     0.0003   20.7   0.0    0.00063   19.6   0.0    1.4  1  HATPase_c_5  GHKL domain
     0.0016   18.3   0.0     0.0027   17.5   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
  ------ inclusion threshold ------
      0.016   15.5   0.0      0.042   14.1   0.0    1.8  1  GAF_2        GAF domain
      0.024   15.1   1.9        4.2    7.9   0.0    3.2  3  ACP_PD       Acyl carrier protein phosphodiesterase
      0.039   14.6   0.0       0.11   13.1   0.0    1.8  1  GAF          GAF domain
      0.073   13.2   0.0        0.5   10.5   0.0    2.1  2  sCache_like  Single Cache-like


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   1.1e-24   1.7e-21       1     109 [.     363     470 ..     363     472 .. 0.93

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 1.1e-24
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETT CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepg 99 
                 gd + L q++ nl+dNa++f++++gei +  +++++++++sv DnG+Gip   l+++fe+f++   +++g++ +GlGl+ v+++++l++G+i+++++p+
  CTQ26330.1 363 GDGELLAQALGNLLDNAIDFTPQGGEIALAAEKRNEEVQLSVIDNGCGIPDYALERIFERFYS-LPREDGHKSSGLGLAFVREVARLHHGDINLHNRPE 460
                 5778899*************88********997668***************************.7788899**************************** PP

                 TEEEEEEEEE CS
   HATPase_c 100 rGttftftlp 109
                 +G   t++l 
  CTQ26330.1 461 GGVVATLRLH 470
                 **99998875 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.3   8.4e-15   1.2e-11       6      66 ..     260     319 ..     256     320 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 8.4e-15
                 HHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   6 lagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 + ++ HEL+ PL+ai+g+ae+L++  + +e  +++ + i  +  r++ lve+lL+ +r+e+
  CTQ26330.1 260 VYDLTHELKSPLAAIRGAAEILREG-PPPEVAARFTDNILAQNTRMQLLVERLLQQARLES 319
                 6789******************995.889*****************************997 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.6e-10   3.9e-07      35     154 ..      57     164 ..      33     170 .. 0.69
   2 ?   -2.3   0.0         2     3e+03     177     193 ..     357     373 ..     354     410 .. 0.65

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.6e-10
    dCache_1  35 tlasnpslqdlleepnraneasreslqallksilksnpdisgvylvdadGqviassdpssppnlegtddpadrdwykealaggggkpvisdpyvdqtgg 133
                 +la np+  +l++++ + n++  ++  + +k++ + +     vyl da G+v++ s+    ++    d  + +d + + +   g++++ sdp+   ++ 
  CTQ26330.1  57 LLAANPQQGRLAQAFHQLNQQPLNANIGGIKKVRNEY----RVYLTDARGKVVFDSSGQATGQ----DYSRWNDVWLTLRGQYGARSTRSDPH---DEA 144
                 4555555555555555435555566666666665555....7************775443322....344455559888888889********...435 PP

    dCache_1 134 kpvitiavpiyddsgkfiGvl 154
                  +v++ia+p++d +g++iGvl
  CTQ26330.1 145 SSVMYIAAPVMD-KGRIIGVL 164
                 79*********9.6******9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2
    dCache_1 177 yvfivdsdGniiahpdk 193
                 + ++v++dG+++a    
  CTQ26330.1 357 SGMLVNGDGELLAQALG 373
                 56899999999987543 PP

>> dCache_3  Double sensory domain of two-component sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.4e-09   3.5e-06      30     140 ..      55     168 ..      36     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.4e-09
    dCache_3  30 lelvasspg...vaeaisegdreqlerlldsiwndlgleqivlldadgtvilrlhepskfgdslslfrllirsvlqgeealagievgdag...ctfrvv 122
                   l+a++p+   +a+a+ + +++ l  ++  i+++ ++ +++l+da g+v+++    +  g+++s +++ +  +l+g+   + ++  +++    + +++
  CTQ26330.1  55 EDLLAANPQqgrLAQAFHQLNQQPLNANIGGIKKVRNEYRVYLTDARGKVVFD-SSGQATGQDYSRWND-VWLTLRGQYGARSTRSDPHDeasSVMYIA 151
                 335555555555*****************************************.777899*********.*********99999999999999****** PP

    dCache_3 123 aPvlaegeqvvGavvfgv 140
                 aPv+ + ++++G++++g+
  CTQ26330.1 152 APVM-DKGRIIGVLSVGK 168
                 ****.5557******998 PP

>> sCache_3_2  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.2   2.5e-07   0.00037      34     125 ..      73     167 ..      33     180 .. 0.61

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.5e-07
  sCache_3_2  34 rapesglqalvddvrritgvdyvvitDeegrvlahpdpaevgrklsgpataaalkagrayvgtv....tgtlgpslrvklPvfdadgrviGivsvG 125
                 ++ ++ l+a +  ++++ +   v+ tD++g+v++ + +++ g+ +s   +  +  +g+  ++            ++ +++Pv+d  gr+iG++svG
  CTQ26330.1  73 QLNQQPLNANIGGIKKVRNEYRVYLTDARGKVVFDSSGQATGQDYSRWNDVWLTLRGQYGARSTrsdpHDEASSVMYIAAPVMD-KGRIIGVLSVG 167
                 2333334444445555555458***********************5444444444443222222232123334577789*****.9********** PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       2.3   3.5e+03      38      46 ..      65      73 ..      65      74 .. 0.83
   2 !   19.2   0.0   7.9e-07    0.0012       9      52 ..     209     251 ..     202     252 .. 0.90
   3 ?   -1.0   0.1       1.6   2.4e+03       6      24 ..     267     292 ..     263     337 .. 0.67
   4 ?   -2.5   0.1       4.7     7e+03      39      51 ..     367     379 ..     366     381 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.3
                HHHHHHHHH CS
        HAMP 38 GeLarafNa 46
                G+La+af +
  CTQ26330.1 65 GRLAQAFHQ 73
                89****976 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 7.9e-07
                 HHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   9 PLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 ++ +L+r a+++ a +   +lp+ g  E++ La+a++ M+ +L+
  CTQ26330.1 209 SIGKLVRYADSVTA-ERPLPLPEVGSSELRKLAQALESMRVKLE 251
                 6899*********9.99999********************9886 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.6
                 THHHHHHHHHHHHHHTTT.......B CS
        HAMP   6 ilrPLrrLaraarriaaG.......d 24 
                 +  PL  ++ aa+ +++G       +
  CTQ26330.1 267 LKSPLAAIRGAAEILREGpppevaaR 292
                 66788888888888888866644441 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 4.7
                 HHHHHHHHHHHHH CS
        HAMP  39 eLarafNaMldrL 51 
                  La+a+ ++ld+ 
  CTQ26330.1 367 LLAQALGNLLDNA 379
                 599**99999986 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.2e-07   0.00063       7      89 ..     369     457 ..     366     461 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.2e-07
  HATPase_c_5   7 cvilgnlLdNAieacskieeekrfIrltvrekkksliis.ieNsyeg.....ek..kkle..sskskkeehGiGlksireivkkykgnlsiea 89 
                     lgnlLdNAi+   +      +I l ++++++ + +s i+N +       e   +++    ++  ++  G+Gl  +re+++ ++g++++++
   CTQ26330.1 369 AQALGNLLDNAIDFTPQGG----EIALAAEKRNEEVQLSvIDNGCGIpdyalERifERFYslPREDGHKSSGLGLAFVREVARLHHGDINLHN 457
                  5679********9988766....7*******9999877625777666666552244444422335567789****************998765 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.8e-06    0.0027       4      71 ..     369     438 ..     366     442 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.8e-06
  HATPase_c_3   4 ekAlaelvdNsldAdaen..vkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakrkstslG 71 
                   +Al  l+dN++d   +   + + ++k+ +++ ++++ D+G G++   l++ + r+ +  +e  +ks  lG
   CTQ26330.1 369 AQALGNLLDNAIDFTPQGgeIALAAEKR-NEEVQLSVIDNGCGIPDYALERIFeRFYSLPREDGHKSSGLG 438
                  67999********666551166666664.7899******************88568777777666666655 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.8e-05     0.042      84     137 ..     137     196 ..      62     197 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.8e-05
                 HHHHHTT--E...EEEEE-TTS---EEEEES.........--HHHHHHHHHHHHHHHHHH CS
       GAF_2  84 paghaglrsf...lavPlisegrvvGvlnlyankppa...fdeedlelLeelaeqiaiai 137
                 + + ++ +s+   +a P++++gr++Gvl+++  +        ++++++L + +++++ia+
  CTQ26330.1 137 RSDPHDEASSvmyIAAPVMDKGRIIGVLSVGKPNLAMtpvIKRSERRILWAGGALLGIAL 196
                 3333444444777****************9644433355567777777777777777775 PP

>> ACP_PD  Acyl carrier protein phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0028       4.2       4      86 ..      12      90 ..      11      99 .. 0.83
   2 ?    0.4   0.0      0.59   8.9e+02      57      88 ..     235     266 ..     233     272 .. 0.85
   3 ?    3.6   0.4     0.057        86      32      85 ..     297     350 ..     287     357 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0028
      ACP_PD  4 fLarnwseysaepLeefvqrvyaqlekneealPerlqrllprmieedwLesYaelegieralqrmarrlkrasklaeaieele 86
                fL+   + +    L+ fvq+v+  +++ +e + +++++ll+ +++ed+L+   +   +++a++++++++ +a+   + i++++
  CTQ26330.1 12 FLIVAIAAWF--VLSIFVQEVKPGVRRATEGTLNDTATLLAALAREDLLAANPQQGRLAQAFHQLNQQPLNAN--IGGIKKVR 90
                5555555554..6899**************************************************9998888..44455555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.59
      ACP_PD  57 elegieralqrmarrlkrasklaeaieeleen 88 
                 el  +++al++m  +l+ ++++++ + +l+++
  CTQ26330.1 235 ELRKLAQALESMRVKLEGKNAIENYVYDLTHE 266
                 6778999******9999999999999888765 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.057
      ACP_PD  32 eealPerlqrllprmieedwLesYaelegieralqrmarrlkrasklaeaieel 85 
                   a  +r+q l++r+ ++  Les  e++    +++ + +rl+ + ++a a++ +
  CTQ26330.1 297 ILAQNTRMQLLVERLLQQARLESRLEIKQQPVSIDALYQRLTEERNIALAAKAI 350
                 5556789******************************99999999888887766 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.2e-05      0.11      76     132 ..     134     195 ..      88     196 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.2e-05
                 T.HHHHHHHHTTESEEEEEEEEETTEEEEEEEEEESSS....CSHHHHHHHHHHHHHHHHHH CS
         GAF  76 y.nrrdllenmgirsslvvPlvndgelwGllvlhnpsp....pftreelellqvladqvava 132
                 +  r+d  ++  ++ ++++P++++g+++G+l++  p         r+e+++l + ++++++a
  CTQ26330.1 134 RsTRSDPHDEASSVMYIAAPVMDKGRIIGVLSVGKPNLamtpVIKRSERRILWAGGALLGIA 195
                 355667777889999******************99433444244888888887777777666 PP

>> sCache_like  Single Cache-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.73   1.1e+03      14      45 ..      45      76 ..      37      78 .. 0.86
   2 ?   10.5   0.0   0.00033       0.5      45     115 ..      93     167 ..      85     169 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.73
                 HHHHHHHHS-GGG-SSHHHHHHHHHHHHHHT- CS
  sCache_like 14 Eakllasllenenlkaaenkkvleeaseklda 45
                  a lla l+ ++ l a+ ++ +l +a ++l+ 
   CTQ26330.1 45 TATLLAALAREDLLAANPQQGRLAQAFHQLNQ 76
                 588999999999999999999***99999985 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00033
                  -EEEEEETTS-EEEETTS.....S---HHHHHHHHTT--.......EE-----S-EEEEEEEEETTEEEEEEEEE CS
  sCache_like  45 aritivdadgkvlydtgq..eieeaeseavikellskee..rskevviteeeedlyyyavpikkegeqeGYills 115
                   r+ + da gkv++d+ +    ++    +++  +l+++   rs  +   +e  ++ y a p+ ++g  +G + + 
   CTQ26330.1  93 YRVYLTDARGKVVFDSSGqaTGQDYSRWNDVWLTLRGQYgaRSTRSDPHDEASSVMYIAAPVMDKGRIIGVLSVG 167
                  69999**********999665666667788888888888788888888999999************999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.36
# Mc/sec: 3903.25
//
Query:       CTQ26331.1  [L=452]
Description: inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.7e-138  461.4   0.0   3.1e-138  461.2   0.0    1.0  1  CreD           Inner membrane protein CreD


Domain annotation for each model (and alignments):
>> CreD  Inner membrane protein CreD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  461.2   0.0  1.7e-142  3.1e-138       2     428 .]       6     427 ..       5     427 .. 0.99

  Alignments for each domain:
  == domain 1  score: 461.2 bits;  conditional E-value: 1.7e-142
        CreD   2 lllKllviallllllliplalikslvkeReerqeevveeiaeswggeqtltgpvlvvpyketveeeekekkkkekeeeeellilPeelkvdgklktevr 100
                 l++K+++++ +++ll +pl+++++l++eR+++++evv+ i++s++g+q+l+gp++++p++et ++ e++k +++ +++  +++lPe+l v+gk ++e+r
  CTQ26331.1   6 LFWKITTLIGCIVLLSLPLMMVRELINERADYRSEVVDAIEQSTSGSQKLAGPLIAIPITETLTRMENQK-EVNYQRSWVYYWLPESLAVTGKQTVESR 103
                 689****************************************************************999.88888899999***************** PP

        CreD 101 krgiyevvvYnaklelkgsfkkeklekeeieeeeieldkallvlgisdlrgikkapklkvngqklefepgtkeekllesgvhaklplaeekeeklefel 199
                 + giy+ +v++ +l++k+sf+   l+ ++ ++++i l++++lv++++d+rgi + ++ +vng+ l++epg + +   + g+h+++p+ +e++++le+++
  CTQ26331.1 104 RVGIYSGQVWHNALQIKASFDP--LRLAALRKTNIVLGQPRLVVSVGDARGIGAIHAPEVNGNVLSVEPGLGISG-DGAGIHMPMPALAEDNKPLEIAF 199
                 **********************..888888889****************************************99.9********************** PP

        CreD 200 klelkGseslsivplgketevelksdwphPsFsGsfLPeereisekgFsAeWkvsslarnleqsleaseaeskelekssfgvkllepvdqYqkseRavk 298
                 +l+l+G+ ++s+vplg+++e++l+s+wphP F GsfLP++re+s++g++A+W+ s++a+++ + ++ ++ e + ++  +f+ ++++ +dqYq ++Ra+k
  CTQ26331.1 200 SLDLNGTGEFSLVPLGRNSELQLTSNWPHPGFLGSFLPTQREVSAAGYRAHWQSSWFANDMGSYFK-DDMEIPWSRLPAFSADVMSLADQYQLTDRATK 297
                 ******************************************************************.******************************** PP

        CreD 299 YalLfivltflafflfevlkklrihpiqYlLvGlalvlFYlLllslsEhlgFelAYliaalavvllislYlssvlkskkrgllfaallallYgllyvlL 397
                 Ya+L+i+ltf+aff+fe l+++++hp+qYlLvGl+lvlFYl+ll+lsEh+gF++A+l a+l+  +++++Yl++vl+ ++++llf+a+l+ll g++++lL
  CTQ26331.1 298 YAILLIGLTFMAFFVFESLTRRPLHPMQYLLVGLSLVLFYLVLLALSEHIGFTAAWLAASLSGAVMNGIYLQAVLRGWRNSLLFVAALLLLDGVMWFLL 396
                 *************************************************************************************************** PP

        CreD 398 qledyALLlGslllfvvLalvMvltrkidWy 428
                 ++ed ALLlG+ +l ++L+++M+ltr++dWy
  CTQ26331.1 397 HSEDSALLLGTGVLALALSVLMFLTRRVDWY 427
                 ******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3320.85
//
Query:       CTQ26332.1  [L=238]
Description: DNA-binding response regulator in two-component regulatory system with ArcB or CpxA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-27   96.0   0.4    4.6e-27   94.4   0.2    1.8  2  Response_reg  Response regulator receiver domain
    1.4e-18   66.8   0.0    2.7e-18   65.8   0.0    1.5  1  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.2   5.1e-31   4.6e-27       1     110 [.       6     113 ..       6     115 .. 0.98
   2 ?   -0.9   0.0       0.2   1.8e+03      62      82 ..     205     228 ..     203     231 .. 0.81

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 5.1e-31
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +liv+D+ + r+ l++++e egy +v ea+dg+e+ ++l e++++l+++Din+pg +Gl l++e+re+  ++  ++lt++++e d++ +l++gadd+
    CTQ26332.1   6 ILIVEDELVTRNTLKSIFEAEGY-DVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELREQA-DVALMFLTGRDNEVDKILGLEIGADDY 100
                   8**********************.*******************************************99.*************************** PP

                   EESSG-HHHHHHH CS
  Response_reg  98 lsKpfdpeeLlka 110
                   ++Kpf+p+eL+ +
    CTQ26332.1 101 ITKPFNPRELTIR 113
                   *********9865 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.2
                   HHHHHHCT...TTSEEEEEESSTS CS
  Response_reg  62 lkeireed...pelpviiltahse 82 
                   +++ir++    p++p ii t h+e
    CTQ26332.1 205 IRRIRKHFestPDTPEIIATIHGE 228
                   789999887778899999998875 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0     3e-22   2.7e-18       1      77 []     156     232 ..     156     232 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 3e-22
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ge+++l + ef+ +  ++enpg++ sr+eLl+++ g++ ++ drtvdv i+r+Rk +e +++ p+ I t++g GYr+
   CTQ26332.1 156 GEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDTPEIIATIHGEGYRF 232
                  68899**********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1888.28
//
Query:       CTQ26333.1  [L=228]
Description: rRNA methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-32  113.0   0.0    1.9e-32  112.4   0.0    1.3  1  SpoU_methylase  SpoU rRNA Methylase family


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.0   1.1e-36   1.9e-32       2     142 .]       3     153 ..       2     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 1.1e-36
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHH.EEEESSHHHHHHHHCCCTEEEEEESTT-SEGC....CS CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevle.lkvvdsleealkelkeegfalvatslkgksls....ei 91 
                     l+++lv++  ++N+Ga+aR++k++g++el++v+ ++   l p a+++a+g+ ++l+ ++++++l+eal++++ + +a++a+s+   +++    ++
      CTQ26333.1   3 LTIILVGPARAENVGAAARAMKTMGFRELRIVDSEAH--LAPPARWVAHGSGDILDgITTYPTLAEALHDVDFT-VATTARSRARFHYYatpqQL 94 
                     78*******************************6665..9999*****************************99.77777777555666444411 PP

                     ........HHHTTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  92 ........dlkekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
                             +++ ++alvfG+Ed+Glsne+l+lad l  +pm+ +++SLN+ ++v++ +y
      CTQ26333.1  95 lplleekaQWMTHAALVFGREDSGLSNEELALADVLTGVPMAADYPSLNLGQSVMVYCY 153
                     55555555888**********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1744.94
//
Query:       CTQ26334.1  [L=820]
Description: fused aspartokinase I; homoserine dehydrogenase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-47  161.6   0.0    6.9e-47  159.6   0.0    2.1  2  Homoserine_dh  Homoserine dehydrogenase
    4.9e-46  157.3   0.6    1.9e-45  155.4   0.1    2.1  2  AA_kinase      Amino acid kinase family
    7.9e-32  110.4   0.0    2.7e-31  108.7   0.0    2.0  1  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
    7.8e-19   67.2   1.2    1.4e-08   34.4   0.4    2.7  2  ACT_7          ACT domain
    2.3e-18   65.6   0.2    1.1e-08   34.6   0.0    2.9  2  ACT            ACT domain


Domain annotation for each model (and alignments):
>> Homoserine_dh  Homoserine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.78   2.8e+03      79     130 ..     296     353 ..     293     359 .. 0.57
   2 !  159.6   0.0   1.9e-50   6.9e-47       1     173 []     614     811 ..     614     811 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.78
                    TTT--GGGSEE--STTS-HHHHHHHH......CTTEEEEEEEEECEEEEEEEEEETTS CS
  Homoserine_dh  79 gleveledvevegiskltaedikeak......eegkvlklvasavearVkpelvpksh 130
                    g++ + +d++v+gis+l++  + + +        g+  ++ a++ +a +++ l+ +s+
     CTQ26334.1 296 GASRDEDDLPVKGISNLNNMAMFNVSgpgmkgMVGMAARVFATMSRAGISVVLITQSS 353
                    5666789999999999998875444412211133444444444445666666666655 PP

  == domain 2  score: 159.6 bits;  conditional E-value: 1.9e-50
                    --HHHH.HHTCTTSEEEEEEEE--HHHHHHHHHHHCHTT-HHHHHHHHHHTTSS-SSTHHHHTTHHHHHHHHHHHHHHCTTT--GGGSEE--.... CS
  Homoserine_dh   1 Piiktl.keilsgdritrieGilngtlnyiltemeeegasfsevlkeaqelGyaeaDptdDveGlDaarKlailarlafgleveledveveg.... 91 
                    P+i+ l ++ ++gd++++++Gil+g+l++i+ +++e g sfs++ + a+e+Gy+e+Dp+dD++G+D+arKl+ilar+  g e+el+d+ ve+    
     CTQ26334.1 614 PVIENLqNLLNAGDELRHFSGILSGSLSFIFGKLDE-GVSFSAATALAREMGYTEPDPRDDLSGVDVARKLLILARET-GRELELADIIVESalpp 707
                    9*****9999*************************6.999**************************************.*************6666 PP

                    ...........STTS-HHH......HHHHHCTTEEEEEEEEE...CEEEEEEEEEETTSGGGHSSST-EEEEEEESSSEE..EEEEES-SSHHHHH CS
  Homoserine_dh  92 ...........iskltaed......ikeakeegkvlklvasa...vearVkpelvpkshplasvkgsenavlvetdrlge..lviqGpgaGaepTA 165
                               + +l++ d      +++a++egkvl++v+ +    ++rVk+++v+ ++pl++vk+ ena++++++++++  lv++G gaG+++TA
     CTQ26334.1 708 dfdasgdvetfMARLPSLDdgfasrVAKARDEGKVLRYVGNIeedGTCRVKIAAVDGNDPLFKVKNGENALAFYSHYYQPlpLVLRGYGAGNDVTA 803
                    6666666555544888888899999****************765548*********************************99************** PP

                    HHHHHHHH CS
  Homoserine_dh 166 savlsDll 173
                    ++v++Dll
     CTQ26334.1 804 AGVFADLL 811
                    ******96 PP

>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   0.1   5.2e-49   1.9e-45       3     241 .]       2     284 ..       1     284 [. 0.83
   2 ?   -0.3   0.0      0.18   6.6e+02      38      63 ..     468     496 ..     422     577 .. 0.71

  Alignments for each domain:
  == domain 1  score: 155.4 bits;  conditional E-value: 5.2e-49
                 EEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--.HHHHHHHHHH....TCCCCCHHHC...................E..HHHHHHHHH.. CS
   AA_kinase   3 vVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGg.gsftdgllal....ksglssgelaa...............glrstleeagevatr.. 79 
                  V+K+GG+s++++e+  + r+a++++  +++  +++ V ++  ++t++l+a           +   a               +                
  CTQ26334.1   2 RVLKFGGTSVANAER--FLRVADILESNARQ-GQVATVLSApAKITNHLVAMiektI---GGQD--AlpniadaerifaellQ-------------Gla 79 
                 69*************..***********555.5999999999**********64431...2222..22244454444444441.............133 PP

                 ........................................HHHHHHHHHHHHHHHHTTHGEEEE-GGGTCEECCCE.....HHHTTTCEEECCHHHHHH CS
   AA_kinase  80 ........................................dalaslgerlvaallaaglpavglsaaaldateagr...degsdgnvesvdaeaieell 135
                                                         +al   ge+l+ a++a +l+a+g +++ ++++e+     ++ ++ ++   +++ i+ + 
  CTQ26334.1  80 daqpafplaqlkafveqefaqikhvlhgisllgqcpdsvnAALICRGEKLSIAIMAGLLEARGHKVSVINPVEKLLavgHYLESTVDIAESTRRIAASQ 178
                 344555555567777777888899****************************************************98855555444444455554444 PP

                 .HTT-EEEEESEEEEETTTE...EEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHH CS
   AA_kinase 136 .eagvvpvltgfigldeege...lgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpdarllpeisvdeaeesaselatgGmkvkhpaalaaa 230
                   a++ + ++gf + +e+ge   lgr++sD++aa lA++l+Ad+++i+tdVdGVy++dp++vpdarll+ +s++ea+e    l+++G+kv+hp+++a++
  CTQ26334.1 179 iPADHMILMAGFTAGNEKGElvvLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAME----LSYFGAKVLHPRTIAPI 273
                 37789*************************************************************************....***************** PP

                 HCTT-EEEEEE CS
   AA_kinase 231 rrggipvvItn 241
                  + +ip+ I+n
  CTQ26334.1 274 AQFQIPCLIKN 284
                 *********98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.18
                 EEEE--HHHHHHHHHH...TCCCCCHHHC CS
   AA_kinase  38 vvVhGggsftdgllal...ksglssgela 63 
                 v V+G g+++ +ll++   ++g+ +++++
  CTQ26334.1 468 VFVIGVGGVGGALLEQikrQQGWLKNKHI 496
                 77888888888888887666666666665 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   0.0   7.4e-35   2.7e-31       1     116 [.     472     605 ..     472     606 .. 0.98

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 7.4e-35
                    --SHHHHHHHHHHHH---S.....SEEEEEEEEESS.EEE-TT......HHHHHT--CB---HHHHHHHH.....S-EEEEE-S--HHHHTTHHHH CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqse.....ielelvavadrd.sllskd......rkallasealtldlddliahl.....dpdvvVEcasseavaelvlka 79 
                    G+G++G+a+leq+krqq +     i+l++++va+++  l+s +      + a+la+++++ +l +li+ +      ++v+V+c+ss+ava++++++
     CTQ26334.1 472 GVGGVGGALLEQIKRQQGWlknkhIDLRVCGVANSQaLLTSVHglnlenWSAELAEAKEPFNLGRLIRLVkeyhlLNPVIVDCTSSQAVADQYADF 567
                    9***********************************9999999*************************88***977******************** PP

                    HHTTEEEE-S--CGGG.-HHHHHHHTSSSTTS--.EE- CS
  NAD_binding_3  80 Lkagkdvvtankgala.dealyeeLreaaeangakiyv 116
                    L++g++vvt+nk+a++ ++++y++Lr aa+++++k+++
     CTQ26334.1 568 LREGFHVVTPNKKANTsSLDYYHQLRHAASSSQRKFLY 605
                    ***********************************998 PP

>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   5.1e-11   1.8e-07       5      64 ..     314     375 ..     312     376 .. 0.90
   2 !   34.4   0.4   3.9e-12   1.4e-08       4      61 ..     394     453 ..     392     457 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 5.1e-11
                 EEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE...-SS-EEEEEEGGGHHHHHHHHH CS
       ACT_7   5 gwiklsvvgsglpfdvtGivaklaspLaeagIsifqiS...tyrtdyiLVpeedlekAveaLh 64 
                 ++++++v+g+g+++ ++G++a++++  ++agIs+  i+   +++++++ Vp++d  +A +a +
  CTQ26334.1 314 NMAMFNVSGPGMKG-MVGMAARVFATMSRAGISVVLITqssSEYSISFCVPQSDCARAKRAME 375
                 6799**********.******************87665556****************998866 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 3.9e-12
                 EEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE...-SS-EEEEEEGGGHHHHHH CS
       ACT_7   4 dgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiS...tyrtdyiLVpeedlekAve 61 
                 ++ + +svvg+g+++ + Gi ak +++La+a+I+i +i+   ++r+++++V  +d+ + v+
  CTQ26334.1 394 ERLAIISVVGDGMRT-LRGISAKFFAALARANINIVAIAqgsSERSISVVVSNDDATTGVR 453
                 57899**********.**********************9999*************987665 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   3.2e-12   1.1e-08       6      61 ..     324     376 ..     322     381 .. 0.92
   2 !   27.4   0.6     6e-10   2.2e-06       6      51 ..     405     447 ..     400     454 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 3.2e-12
                 EEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHH CS
         ACT   6 gvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlea 61 
                 g+++++G++arvf++++++gi+++ i+q+sse+   +i+f+v   d ++++ ++e 
  CTQ26334.1 324 GMKGMVGMAARVFATMSRAGISVVLITQSSSEY---SISFCVPQSDCARAKRAMED 376
                 7999*****************************...8*****99999999998886 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 6e-10
                 EEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEE CS
         ACT   6 gvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvd 51 
                 g++   G+ a++f+ala+++iNi+ i q+sse+   +i++vv   d
  CTQ26334.1 405 GMRTLRGISAKFFAALARANINIVAIAQGSSER---SISVVVSNDD 447
                 677778*************************98...5666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 5901.31
//
Query:       CTQ26335.1  [L=309]
Description: homoserine kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-15   56.0   0.2    7.6e-15   54.9   0.2    1.6  1  GHMP_kinases_N  GHMP kinases N terminal domain
    1.5e-10   41.3   0.9      4e-10   39.9   0.0    2.2  2  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.2   8.5e-19   7.6e-15       3      66 .]      85     150 ..      83     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 8.5e-19
                     EEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHH.HHHHHHHHHH.HHHHHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N   3 vikseiPvgaGLGSSAAlavalvaAllallglsl.eeaklaleae.rlaqggngsggDvaasvyGg 66 
                     ++++++P+g+GLGSSA+ +va+++A+++++g++l e+ +lal +e +    g+ + ++va++++Gg
      CTQ26335.1  85 TLEKNMPIGSGLGSSACSVVAALVAMNEFCGKPLnETRMLALMGEmEGRISGSIHYDNVAPCYLGG 150
                     789******************************95556667766633334588999999******8 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.5      0.71   6.3e+03      55      65 ..      93     103 ..      92     109 .. 0.83
   2 !   39.9   0.0   4.4e-14     4e-10       2      79 ..     211     283 ..     210     289 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.71
  GHMP_kinases_C  55 GaGgGptvfal 65 
                     G+G+G++ + +
      CTQ26335.1  93 GSGLGSSACSV 103
                     99***998866 PP

  == domain 2  score: 39.9 bits;  conditional E-value: 4.4e-14
  GHMP_kinases_C   2 lealergdlellgellnlsqrs...elkavvgilppeleellealselGalgaklsGaGgGptvfalfkdkdeaeqvaral 79 
                     + a+++++ +l ++l+     +   e+  ++ +l p + e+ +a++e Ga + ++sG+  Gpt+fal++++d a++va+ l
      CTQ26335.1 211 IHACYTRQPQLAAKLMK----DviaEP--YRTKLLPGFSEARQAAMEMGAQACGISGS--GPTLFALCDKPDTAQRVADWL 283
                     56778888999999999....78899*..*****************************..*****************9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2557.84
//
Query:       CTQ26336.1  [L=426]
Description: threonine synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-23   83.6   0.0    2.3e-23   83.1   0.0    1.1  1  PALP         Pyridoxal-phosphate dependent enzyme
    4.7e-13   49.1   0.0    1.8e-12   47.3   0.0    2.0  2  Thr_synth_N  Threonine synthase N terminus


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   2.5e-27   2.3e-23      28     281 ..      97     369 ..      81     372 .. 0.80

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 2.5e-27
                 EGGGSTTSBTTHHHHHHHHHH..HHTTTTTSEEEEEBSSHHHHHHHHHHHHH.T-EEEEEEETTS-.HHHHHHHHHTT-EEEEE..CCHHHHHHHHHHH CS
        PALP  28 lEslnptgSfKdRgaeyllar..lkegtgaktvveassGNhgralAaaaall.Glkvtivvpadas.pekvallrllGaevvev..ggdydeavaaaae 120
                   ++ pt +fKd g  ++ +   +  g +  t+++a+sG++g+a+A+a   l ++kv+i+ p+++  p + +l   lG +++ v  +gd+d+++a++++
  CTQ26336.1  97 ELFHGPTLAFKDFGGRFMAQMltHIAGDKPVTILTATSGDTGAAVAHAFYGLpNVKVVILYPRGKIsPLQEKLFCTLGGNIETVaiDGDFDACQALVKQ 195
                 34566***********888887678889************************9**********99867888888888987777777************9 PP

                 HHHH..STTCEE--TTT..SHHHHHHHHTHHHHHHHHTT...TTEE..EEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS..S.SS. CS
        PALP 121 laae..gegaylvsqfd..nptviegygtiglEileqlg...gkpd..avvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslragrrvtv 210
                 +  +   +  + +++ +  n  + +++    +E ++ql+   +  +  ++ vp G+ g +++   +   + p  + +++ ++ +d++ r+l+ g+  + 
  CTQ26336.1 196 AFDDeeLKATLGLNSANsiNISRLLAQICYYFEAAAQLPqeaR--NqlVISVPSGNFGDLTAGLLAKSLGLPI-KRFIAATNANDTVPRYLQGGEWAPK 291
                 9888433333334444344555666666666777788885423..2347899999999999988888888995.666666778**************** PP

                 .B.SSS.CCSTCS..CGTTCCHHHHSEEEE.....EEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHC CS
        PALP 211 pvsdtiadglavg..spselafelldrlvd.....eivtvsdeealeamrllarregivvepssaaalaal.klreage 281
                  ++ t+  +++v+  ++ +++ el++r++       + +v+de++ +amr+l  + g++ ep++a+a  al ++++ ge
  CTQ26336.1 292 ATQATLSNAMDVSqpNNWPRVEELFRRKIWrlselGYAAVDDETTKAAMRELK-AIGYISEPHAAIAWRALrDQLQPGE 369
                 *************885556666666666667777799***************9.*****************66666665 PP

>> Thr_synth_N  Threonine synthase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0     2e-16   1.8e-12       7      79 .]       8      80 ..       4      80 .. 0.96
   2 ?   -3.5   0.0       1.5   1.3e+04      31      51 ..     306     329 ..     305     332 .. 0.58

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 2e-16
  Thr_synth_N  7 geaeklsfeeallkGlAeDgGLyvPeeiPklsaeeleelrklsYaelafevlklfiedeipeedLkeliekaY 79
                 +++e++sf +a+ +Gl +  GL+ P+ +P++s +e++++ + ++    +++l+ fi+deip++ L++ +++a+
   CTQ26336.1  8 DHNEQVSFAQAVTQGLGKHQGLFFPHDLPEFSLTEIDDMLAQDFVTRSAKILSAFIGDEIPQDVLQQRVRAAF 80
                 6789***************************************************************999886 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.5
  Thr_synth_N  31 PeeiPklsae...eleelrklsYa 51 
                  P+++P++++    ++ +l++l Ya
   CTQ26336.1 306 PNNWPRVEELfrrKIWRLSELGYA 329
                  778888776411145555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3658.42
//
Query:       CTQ26337.1  [L=125]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   18.6   0.4     0.0069   16.2   0.4    2.0  1  SmpA_OmlA  SmpA / OmlA family
  ------ inclusion threshold ------
      0.027   14.9   1.7      0.059   13.9   1.7    1.6  1  LPAM_1     Prokaryotic membrane lipoprotein lipid attachment 


Domain annotation for each model (and alignments):
>> SmpA_OmlA  SmpA / OmlA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.4   7.7e-07    0.0069      12      70 ..      37     123 ..      31     124 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.7e-07
                 --TT.-BHHHHHHHH-S-...SEE.-SSSSSEEEEEEEETTE.............................EEEEEEEE-TTSBEEEE CS
   SmpA_OmlA  12 lkpG.mtkeqVryllGsP...slt.dtfdpnrwdYvynfkrg.....gka...................veqqvlavyFdddglvrsi 70 
                 l +G  tk++Vr+  G P   ++t    +++ w+Y  ++  +     g                     ++++ l ++Fd++g+v+++
  CTQ26337.1  37 LIVGkTTKAEVRQYFGAPdsgHTTvTASGKESWYYSVDKGINlvslaG-SmipvtgasqaadavdkssqKDSNSLMIFFDEKGVVENW 123
                 668999**********996664444888999****9999999665550.0556666678889999999899**************986 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.7   6.6e-06     0.059       3      18 .]       2      17 ..       2      17 .. 0.97

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.6e-06
      LPAM_1  3 KillalgalllLsGCs 18
                +il++++ +++L+GCs
  CTQ26337.1  2 RILSLFLVVFALTGCS 17
                89*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1140.04
//
Query:       CTQ26338.1  [L=257]
Description: conserved hypothetical protein; family UPF0246 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-91  305.2   0.0    3.1e-91  305.0   0.0    1.0  1  H2O2_YaaD  Peroxide stress protein YaaA


Domain annotation for each model (and alignments):
>> H2O2_YaaD  Peroxide stress protein YaaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.0   0.0   1.7e-95   3.1e-91       1     232 [.       1     243 [.       1     244 [. 0.97

  Alignments for each domain:
  == domain 1  score: 305.0 bits;  conditional E-value: 1.7e-95
   H2O2_YaaD   1 MlillSpAktldedsleakteetqpefleeaeellealkklseeelkkllkisdklaelnveryqefee...alkkkpAilaynGvvYkaldaeslsee 96 
                 Mlil+SpAktld++s+ a+t+ tqpe+le +++l+ + +kls+ ++ kl++isdkla+ln+ r+++++     ++ ++Aila++G+vY++l+ae+l+e+
  CTQ26338.1   1 MLILISPAKTLDYQSPLATTRYTQPELLEYSQQLIGIARKLSAPQIGKLMSISDKLADLNATRFHDWHPdftPQNARQAILAFKGDVYTGLQAETLTED 99 
                 9****************97656********************************************999998557899********************* PP

   H2O2_YaaD  97 dleyaqehlrIlSglYGlLrpldliqpYRLemgtklanek..dLyefWgekltealne......eevlvnLaSkeyskavkpkklkakvitvvFkeekn 187
                 d+++aq+hlr+lSglYG+Lrpldl+qpYRLemg +l+n +  dLy+fWg+++te+ln+      +++++nLaS+ey+k+vk+ kl+ ++i++vF++ekn
  CTQ26338.1 100 DFDFAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENPRgkDLYQFWGDTITEKLNQalrdqgDDIVINLASDEYFKSVKTPKLQGQLIKPVFLDEKN 198
                 **************************************9667**********************99*******************99************ PP

   H2O2_YaaD 188 gklkvvsvyaKkaRGlmvryiaenriesveeLkefdeegYrfdee 232
                 gk+kv+s+yaKkaRGlm ryi+enr++++e+Lk+f++egY fd++
  CTQ26338.1 199 GKFKVISFYAKKARGLMSRYIIENRLTQPEQLKAFNSEGYFFDAD 243
                 *****************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2228.49
//
Query:       CTQ26339.1  [L=476]
Description: putative amino acid sodium/proton transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.2e-141  471.7  19.8   2.6e-141  471.5  19.8    1.0  1  Na_Ala_symp  Sodium:alanine symporter family


Domain annotation for each model (and alignments):
>> Na_Ala_symp  Sodium:alanine symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  471.5  19.8  1.4e-145  2.6e-141       7     393 .]      52     453 ..      46     453 .. 0.96

  Alignments for each domain:
  == domain 1  score: 471.5 bits;  conditional E-value: 1.4e-145
  Na_Ala_symp   7 kksegeissfqAlatalaarvGtGniaGvatAialGGpGAvfWmwvvallGmatkfvEstLaqlYkekdekgevrGGpayyiekglkkkwlavlfavl 104
                  + + g+++sfqAl+t+laarvG Gn+aGv++Aia+GGpGAvfWmwv+allGma++f+E+ LaqlYke+d++g++rGGpa+y+ +gl+++w++vlf++l
   CTQ26339.1  52 HPQPGGLTSFQALCTSLAARVGSGNLAGVTLAIAAGGPGAVFWMWVSALLGMASSFAECSLAQLYKERDSRGQFRGGPAWYMARGLGMRWMGVLFSIL 149
                  567899******************************************************************************************** PP

  Na_Ala_symp 105 liialglginavqansiasaleeafeveklvvgivlavllalvilggikriakvaevvvPvmailYillalvvillniekvpevlalifksAFgleav 202
                  l++a+g+++n+vqans+a+al+ af+++++v g vlav++ l il g++ +a++++++vP+ma+l+i+++l++ l +i+++p+++a+if+ AFg++++
   CTQ26339.1 150 LLLAYGFIFNTVQANSVAHALRYAFDLPAAVSGGVLAVVVLLAILRGLRGVARLMQWIVPFMALLWIATSLLIGLWHITALPTIFATIFRCAFGWQEA 247
                  ************************************************************************************************** PP

  Na_Ala_symp 203 agGilg....aaialGvkRglfSneAGlGsapiaaAaaev..shpvkqGlvqalgvfidtlvvCtatalvill.........segvaltqaalesvlg 285
                  a+G++g    +a++ G++Rg+fSneAG+Gs+p+aaAaa     hp+ qG+vq++gvfidt+v+Cta+a++++l          +g++  q+a++  +g
   CTQ26339.1 248 AAGAVGytisQALTSGFQRGMFSNEAGMGSSPNAAAAAASwpPHPAAQGIVQMIGVFIDTIVICTASAIIVMLaprpdneytLNGIQDLQHAMSVLVG 345
                  *********99************************99997779******************************7777766666*************** PP

  Na_Ala_symp 286 svgalfvaialllFafstilgnyyygeknleyllgkkkk.lliyrvlvlllvfvgavaslelvwnlaDialglmalvnliaillLskvvvkalkdYek 382
                   +ga f+a+++llFafs+i++ny+y+e+nl +l  +k + ++ +r+l++l+v++g+++sl +vw+ aDi+++lma++nl+aillLs++v  + +dY +
   CTQ26339.1 346 GWGAGFIALIVLLFAFSSIVANYVYAENNLVFLRLDKPRyIWGLRILTVLMVLLGTMVSLPVVWQSADIIMALMAMTNLTAILLLSPTVRIIASDYLR 443
                  **********************************766556********************************************************** PP

  Na_Ala_symp 383 qkkkgkkepvf 393
                  q++ g  +p+f
   CTQ26339.1 444 QRRLG-IQPTF 453
                  **999.46765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 3929.58
//
Query:       CTQ26340.1  [L=317]
Description: transaldolase B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     6e-102  340.8   0.1   6.8e-102  340.7   0.1    1.0  1  TAL_FSA   Transaldolase/Fructose-6-phosphate aldolase


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.7   0.1  3.8e-106  6.8e-102       1     287 []      14     313 ..      14     313 .. 0.94

  Alignments for each domain:
  == domain 1  score: 340.7 bits;  conditional E-value: 3.8e-106
                 EEEE---HHHHHHHHHTT---EEE--HHHHHH..T...TS.-HHHHHHHHHHH............................H-S-EEEE-S-...-SHH CS
     TAL_FSA   1 lvlDtadrelikklleekgiqgvTtNPsliekaik...ykalydeaieeikkeg....kkvkeaydkLavedilealdllgadgrvslEVdarlsddte 92 
                 +v+Dt+d++++k +++    q++TtNPsli+ a++   y++l+d+a+++++++     +++ +a+dkLav+++le+l+l+  +gr+s+EVdarls+dte
  CTQ26340.1  14 VVADTGDIAAMKLYQP----QDATTNPSLILGAAQipeYRKLIDDAVAWARSQSsdraQQILDASDKLAVNIGLEILKLI--PGRISTEVDARLSYDTE 106
                 69**************....*******************************999999999********************..***************** PP

                 HHHHHHHHHHTT-T.......TEEEEEESSHHHHHHHHHHHHTT--EEEEEE-SHHHHHHHHHHT-SEEEEBHHHHHTTT.............S-HHHH CS
     TAL_FSA  93 atieeArrlialye.....renvlIKiPateeGikAikeLkkeGinvnvTliFsleqalaaaeagasviSpFvgRiddllkkleek.dklkgkddgval 185
                 a+i++A+r+i+ly+     ++++lIK+++t++Gi+A+++L+keGin+n+Tl+Fs++qa+a+aeag+ +iSpFvgRi+d++k++++k ++  ++d+gv +
  CTQ26340.1 107 ASIAKAKRIIKLYNdagisNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKANTDKkEYAPAEDPGVVS 205
                 ********************************************************************************66665559*********** PP

                 HHHHHHHHHHHT-S-EEEEBS--SHHHHHHHHT-SEEEE-HHHHHHHT--HHH.....................................HHHHHHHHH CS
     TAL_FSA 186 vkeiynyykklgysTkvmaasfrnveeveelagcdtvTippkllealakhgkt.seklee.eeiek....lleklfrlginedavaeelldegikkFak 278
                 v+eiy+yyk++gy+T vm+asfrnv e++elagcd++Ti+p+ll++l++++   ++kl    e+++    ++e++f +++n+d +a+++l+egi+kFa 
  CTQ26340.1 206 VSEIYEYYKQHGYETVVMGASFRNVGEILELAGCDRLTIAPALLKELSESEGAvERKLVYtGEVKArperITESEFLWQHNQDPMAVDKLAEGIRKFAI 304
                 *************************************************998853443334343333456***************************** PP

                 HHHHHHH-X CS
     TAL_FSA 279 dlekllasl 287
                 d+ekl++++
  CTQ26340.1 305 DQEKLEKMI 313
                 ******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2716.42
//
Query:       CTQ26341.1  [L=195]
Description: molybdochelatase MogA, involved in Moco biosynthesis [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-28   97.1   0.0    8.7e-28   96.8   0.0    1.1  1  MoCF_biosynth  Probable molybdopterin binding domain


Domain annotation for each model (and alignments):
>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   4.8e-32   8.7e-28       2     138 ..       8     147 ..       7     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 4.8e-32
                    EEEE-HHHHTTSSGBHHHHHHHHHHHT...TSEEEEEEEEE-SSHHHHHHHHHHHHHTS..SEEEEESS-SSSTT--HHHHHHHHHSEE-HHHHHH CS
  MoCF_biosynth   2 vitvGdellsgkieDtngpllaellke...lgvevskytvvpDdeeeikeallaaleea..dviittGGtGptpdDvtpealaklfekelegfeea 92 
                     ++++d+  sg ++D+  p l e+l++     +e++ ++++pD+ + i+++l++ ++e    +++ttGGtGp+++Dvtp+a+ ++ ++e++gf+e+
     CTQ26341.1   8 LVSISDRASSGVYQDKGIPALEEWLARaltTPFELQ-TRLIPDEQAIIEQTLCELVDEMgcHLVLTTGGTGPARRDVTPDATLAIADREMPGFGEQ 102
                    689***********************7333555555.569************888777778*********************************** PP

                    HHHHHHHHCCTTSHGGGGGGE.EE...TTE..EEEE-SSHHHHHHHHHHHH CS
  MoCF_biosynth  93 frrvslkpgkpvgvapgailsrav...gkt..iigLPGspkavkealeeil 138
                    +r+vsl+      ++p+ailsr+v   +k+  i++LPG pka++e+le ++
     CTQ26341.1 103 MRQVSLH------FVPTAILSRQVgviRKQalILNLPGQPKAIQETLEGVK 147
                    *******......8*************5555577*************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1532.08
//
Query:       CTQ26342.1  [L=434]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-26   92.4  45.5    2.6e-26   92.4  45.5    2.5  2  MFS_1      Major Facilitator Superfamily
    9.2e-20   70.9  31.0    2.7e-19   69.4   6.2    2.3  2  Sugar_tr   Sugar (and other) transporter
  ------ inclusion threshold ------
       0.18   10.3  26.2     0.0059   15.2  16.4    2.2  2  MFS_2      MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4  45.5   4.4e-30   2.6e-26      34     349 ..      59     381 ..      19     385 .. 0.74
   2 ?   -2.4   6.7      0.29   1.8e+03     278     316 ..     379     415 ..     374     418 .. 0.72

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 4.4e-30
       MFS_1  34 igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa..ss....lw.lllvlrvlqGlgagalfpagaaliadwfpkeergraig 124
                 +g ++++ +l+  ++ +++++++d +Gr++++ l++ll+al  l+++l++  ss     + lll++r+lqG++ g+ +p++ +++a+ +p+++ g a g
  CTQ26342.1  59 FG-IFAAGYLARPLGGIIMAHFGDLVGRKKMFTLSILLMALPtLAIGLLPtySSvgiiAPlLLLLMRILQGAAIGGEVPGAWVFVAEHVPEKRIGIACG 156
                 33.56667777899****************************44444452343334444557************************************* PP

       MFS_1 125 llsagfslGailgpllggllasslg........Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlw.illi 214
                  l+ag  +G++lg +++ l+ +sl         Wr +f++ ++++l+a+ l   +l e+p   + +  k +    ++   v+   al++++ +  ++l+
  CTQ26342.1 157 TLTAGLTVGILLGSVVATLINTSLTpqgihdggWRIPFLLGGVFGLIAMYL-RRWLQETPIFLEMQQRKAL----AQELPVK-AVALKHQKAVViSMLL 249
                 *********************99999**********************663.5555555555555555555....3333333.3444444433223334 PP

       MFS_1 215 alllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfg 313
                 ++ll + g+  +  ++p++lq+++g++   +++ + +++ ++ +i++llag  +dr+g+ r+ +++  ll++a+ +++ la +s + l+l ++ ++G++
  CTQ26342.1 250 TWLLSA-GVVVVILMSPVWLQKHYGFA-PAITLQANSIATIMLCIGCLLAGLAADRFGASRTFIVGSMLLAVASWAFYHLAGASPQRLFL-LYGTVGLC 345
                 444333.67779999************.78999999***********************7777777777777777777777773333333.66679999 PP

       MFS_1 314 lgfvfpsllalasdlappeeagtasglfn.tagslgg 349
                 +g+ ++++ +++++ +p+e + t +++   + +++ g
  CTQ26342.1 346 VGV-VGAVPYVMVRAFPAEVRFTGISFSYnLSYAIFG 381
                 996.699999999999998887666654435555555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.29
       MFS_1 278 llallllllaalglallavtssavllllvlvliGfglgf 316
                 ++++l  +++++++ + +++  +++++l+l l+G+glg+
  CTQ26342.1 379 IFGGLTPIAVTMLMGVSPMA--PAWYVLALSLMGLGLGI 415
                 45555666666666666666..88999999999999997 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   6.2   4.6e-23   2.7e-19       3     209 ..      17     229 ..      15     234 .. 0.93
   2 !    7.9  16.3   0.00021       1.2     252     414 ..     239     396 ..     228     417 .. 0.79

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 4.6e-23
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.. CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.. 99 
                 ++aalgg l+ Yd+ +  +f+++ +   +f ++  ++  +   v++  i+++ ++ + +G++++  +gd +GRkk +  +++l+   ++ +++ + +  
  CTQ26342.1  17 TLAALGGALEFYDFIIFVFFAAVVG-ELFFPADIPEWLRQ---VQTFGIFAAGYLARPLGGIIMAHFGDLVGRKKMFTLSILLMALPTLAIGLLPTYss 111
                 689*******************999.78899999998554...8999**************************************99999999998877 PP

                 ...SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.....TTHHHHHHHCCHHHHHHHHHHGGG CS
    Sugar_tr 100 ...nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn.....adgwrillglqlvpallllilllf 190
                     +  +l+++R+l G ++G++   + ++++E  p+k  g+  +    ++t+Gil+++++ + +n++       + gwri++ l  v+ l+ ++l+ +
  CTQ26342.1 112 vgiIAPLLLLLMRILQGAAIGGEVPGAWVFVAEHVPEKRIGIACGTLTAGLTVGILLGSVVATLINTSLTpqgihDGGWRIPFLLGGVFGLIAMYLRRW 210
                 777788889999**************************99***********************9999988899*99*********************** PP

                 S---HHHHHHTT-HHHHHH CS
    Sugar_tr 191 lPESPrylvekgkeeeake 209
                 l E+P +l +++++  a+e
  CTQ26342.1 211 LQETPIFLEMQQRKALAQE 229
                 ********99999888776 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00021
                 ..HHHHHHHHHHHHHHTTHHHHHHHTTT.HHHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS.. CS
    Sugar_tr 252 rqrlligvvlqifqqltGinaimyyspt.ifenlglsks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakska 347
                  q+++++ +l  +    G+ +++ +sp+ + +  g+ +   l+++ i  ++  + ++ a +  drfG  +++++G++  a++ + +    l++ +    
  CTQ26342.1 239 HQKAVVISMLLTWLLSAGVVVVILMSPVwLQKHYGFAPAitLQANSIATIMLCIGCLLAGLAADRFGASRTFIVGSMLLAVASWAFY--HLAGASP--- 332
                 4688999999*****************93455689*999999***************************************999995..5555555... PP

                 .CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHH.HHHHHHHHHHHHHHHCHHH CS
    Sugar_tr 348 asivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavn.wlanflisllfpiiteaig 414
                  + +++    + +++    +g vp+v+    fp +vR ++++++++++  ++  l+ +  +++++ + 
  CTQ26342.1 333 -QRLFLLYGTVGLCVGV--VGAVPYVM-VRAFPAEVRFTGISFSYNLSyAIFGGLTPIAVTMLMGVSP 396
                 .5566666666666655..99999999.568*************987515677777776666666555 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   2.2     0.026   1.5e+02     269     340 ..      62     143 ..      32     151 .. 0.68
   2 ?   15.2  16.4   9.8e-07    0.0059     144     339 ..     163     357 ..     154     411 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.026
       MFS_2 269 tisallgiplwqplakrlg....kkntyllgalltivllvlvlll......qpsnlllflvllviagfgvgvaallpwsmla 340
                 ++++ l+ pl   + +++g    +k+++ l++ll+++ ++ + ll      +    ll+l++ ++ g ++g+ +  +w ++a
  CTQ26342.1  62 FAAGYLARPLGGIIMAHFGdlvgRKKMFTLSILLMALPTLAIGLLptyssvGIIAPLLLLLMRILQGAAIGGEVPGAWVFVA 143
                 4555555555555555555555499999999998887777777776666666666666666666666666666666666665 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 9.8e-07
       MFS_2 144 vlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervemrkkekteqkeklslleqlkevfrnraflillllfllaalalgv 242
                 ++g +l++++a+l+   l+  +    g++i  l++ +  l+++++  + +        + +++++ + +l  +  ++  ++a +i +ll  l +++++v
  CTQ26342.1 163 TVGILLGSVVATLINTSLTPQGIHDGGWRIPFLLGGVFGLIAMYLRRWLQETPIFL--EMQQRKALAQELPVKAVALKHQKAVVISMLLTWLLSAGVVV 259
                 78999999999999888888899*********************998888877544..33333333444444555677889999999999999****** PP

       MFS_2 243 lnglllYyltyvlgngsaasvfllvv.tisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsml 339
                     +   l++  g++ a+++++  + ti+  +g +l+  +a r+g  +t+++g++l++v +  ++ l  ++   +++l+  +g++vgv + +p+ m+
  CTQ26342.1 260 VILMSPVWLQKHYGFAPAITLQANSIaTIMLCIGCLLAGLAADRFGASRTFIVGSMLLAVASWAFYHLAGASPQRLFLLYGTVGLCVGVVGAVPYVMV 357
                 **************999999999888466666****************999998888888877777777***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3364.45
//
Query:       CTQ26343.1  [L=188]
Description: conserved hypothetical protein; putative inner membrane protein associated with acetate transport [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-42  145.7  20.2    1.5e-42  145.6  20.2    1.0  1  Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family


Domain annotation for each model (and alignments):
>> Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.6  20.2   8.2e-47   1.5e-42      15     195 ..       4     177 ..       1     186 [. 0.93

  Alignments for each domain:
  == domain 1  score: 145.6 bits;  conditional E-value: 8.2e-47
  Gpr1_Fun34_YaaH  15 rkfaNPaPlgllafalttfvlslvnlgargitepnvvvglalfyGGlvqllaGiwefavgntFgatalssYGgFwlsy.aailipgfgilaaYe 107
                       k+aNPaPlgl++f++tt++l+l n g     +  +++++ +fyGG++q++aG++e+  gntFg ta++sYG+Fwl++ a++l+p++g ++a +
       CTQ26343.1   4 TKLANPAPLGLMGFGMTTILLNLANSGLFAFDV--AILAMGIFYGGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLvAILLMPKMGLADAPN 95 
                      799************************998887..799**************************************972555679******994 PP

  Gpr1_Fun34_YaaH 108 edeeelnnalglyllgwfiftfllllatlrstvalfllfffldltflllaigeltgsakvlkAggvfgiiaaflawYnalaglatken 195
                            +++lg+yl  w +ft+++++ tl++  +l ++f+ l++ f llaig+l++++++ k +g++g+i++  a Y a+ ++++++ 
       CTQ26343.1  96 ------AHFLGMYLGLWGVFTLFMFFGTLKAARMLQFVFLSLTVLFALLAIGHLADNEGIVKVAGWVGLICGASAIYLAMGEVLNEQF 177
                      ......89**************************************************************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1443.20
//
Query:       CTQ26344.1  [L=249]
Description: heat shock protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-19   70.8   0.1    1.7e-19   70.3   0.1    1.2  1  Ubiq_cyt_C_chap  Ubiquinol-cytochrome C chaperone
    4.9e-17   61.5   0.4    9.4e-17   60.6   0.1    1.7  2  DUF3944          Domain of unknown function (DUF3944)
  ------ inclusion threshold ------
       0.12   12.4   0.1        1.5    8.8   0.1    2.2  2  Sdh5             Flavinator of succinate dehydrogenase


Domain annotation for each model (and alignments):
>> Ubiq_cyt_C_chap  Ubiquinol-cytochrome C chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.1   2.8e-23   1.7e-19       2     139 ..      59     220 ..      58     225 .. 0.92

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 2.8e-23
  Ubiq_cyt_C_chap   2 elgvpdtfagrfqllvlhtwlllrR................lkaeg...pegreieqelldkffedvdeklreegvgdlsv..pkrmkklaeaf 74 
                      + ++++ +ag++q+++++++++++R                lka+     ++ +ieq+ll +f++++++kl+ e++ +++     r  +l + +
       CTQ26344.1  59 YRRNWQLIAGELQHFGGDSIANTLRrhgkfyrailldvckrLKAKVdkqLSTPQIEQQLLAHFLQHSWNKLNAEQKAQFLAavECRSHELDSLM 152
                      6789*************************************55555547788****************************999555555***** PP

  Ubiq_cyt_C_chap  75 ygrllaydealgs...ddaaLaaalwrnvykaslevdleklaglvgyvraqlatlsalageallvgip 139
                      +++l++ + + g     d++L+a+l+++++++     l + agl g++ a+l++++a++g+a++v+ip
       CTQ26344.1 153 AHLLRHRKLSEGVtllLDERLTAILRTHAAMSAIGHGLVRGAGLGGPLGAALNSVKAVSGSAYRVTIP 220
                      ******999999999****************99899999***************************98 PP

>> DUF3944  Domain of unknown function (DUF3944)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.1   1.6e-20   9.4e-17       1      35 []       5      39 ..       5      39 .. 0.99
   2 ?   -3.1   0.1       1.3   7.5e+03      12      21 ..     142     151 ..     137     155 .. 0.75

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.6e-20
     DUF3944  1 YleDkDLeFLkklssedLedLfdiLthdkdGkkRl 35
                YleD+DL+FL+++s+++Le++++iLth+++Gk+Rl
  CTQ26344.1  5 YLEDDDLAFLPECSEAHLEAFTRILTHGENGKPRL 39
                9*********************************7 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
     DUF3944  12 klssedLedL 21 
                 ++ s +L  L
  CTQ26344.1 142 ECRSHELDSL 151
                 6899999877 PP

>> Sdh5  Flavinator of succinate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.076   4.5e+02      28      45 ..      14      31 ..      12      39 .. 0.86
   2 ?    8.8   0.1   0.00025       1.5      18      50 ..     116     148 ..     114     167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.076
                TTT--HHHHHHHHHHHTS CS
        Sdh5 28 latlseeeldaferLLdl 45
                l++ se+ l+af r+L++
  CTQ26344.1 14 LPECSEAHLEAFTRILTH 31
                57889**********987 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00025
                 HTTTTHHHHHTTT--HHHHHHHHHHHTS--HHH CS
        Sdh5  18 llLgrFaekhlatlseeeldaferLLdleDpdL 50 
                  lL +F+++ +++l++e++++f + +++  ++L
  CTQ26344.1 116 QLLAHFLQHSWNKLNAEQKAQFLAAVECRSHEL 148
                 589*******************99888876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1920.49
//
Query:       CTQ26345.1  [L=134]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-71  238.1   0.3    2.3e-71  237.9   0.3    1.0  1  DUF2541   Protein of unknown function (DUF2541)


Domain annotation for each model (and alignments):
>> DUF2541  Protein of unknown function (DUF2541)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.9   0.3   1.3e-75   2.3e-71       1     130 []       3     132 ..       3     132 .. 1.00

  Alignments for each domain:
  == domain 1  score: 237.9 bits;  conditional E-value: 1.3e-75
     DUF2541   1 slkrlsvalllglalaskakaedvkilGvialarnetedltlklavcrvvkriklsadrGdvdlsgatvvfkaargasdrlnvvkrlkeGnetGWinin 99 
                 sl+rlsv+l+lg++++++a+a+d+kilGvia++rnet+dltl+l+vcrvvkri+lsad+Gdv+lsgatv+fka+rgas++lnv++++keG++tGWinin
  CTQ26345.1   3 SLYRLSVGLILGVSFITSAAANDHKILGVIAMPRNETNDLTLTLPVCRVVKRIQLSADHGDVQLSGATVYFKASRGASHTLNVPAGIKEGSTTGWININ 101
                 89************************************************************************************************* PP

     DUF2541 100 sdndnkrcvskitisGdtvnssdrallkvlG 130
                 sdndnkrcv+ki++sG+tv+ssd+a+lk++G
  CTQ26345.1 102 SDNDNKRCVKKIAFSGHTVHSSDMASLKIIG 132
                 ******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1135.15
//
Query:       CTQ26346.1  [L=638]
Description: chaperone Hsp70, co-chaperone with DnaJ [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     3e-268  891.0  16.2   3.6e-268  890.7  16.2    1.0  1  HSP70          Hsp70 protein
    1.1e-14   54.0   3.1    1.3e-12   47.2   0.7    2.6  2  MreB_Mbl       MreB/Mbl protein
     0.0019   17.9   0.0     0.0051   16.6   0.0    1.7  1  FGGY_C         FGGY family of carbohydrate kinases, C-termina
  ------ inclusion threshold ------
       0.41   11.1  10.1        1.7    9.1   0.2    3.9  3  FtsA           Cell division protein FtsA
        2.5    7.6   5.4       0.88    9.0   2.7    1.5  2  Lant_dehydr_C  Lantibiotic biosynthesis dehydratase C-term
        7.4    5.0   6.1         11    4.4   6.1    1.1  1  FUSC           Fusaric acid resistance protein family
        9.7    7.2  17.3        2.9    8.9   8.6    3.1  2  FKBP_N         Domain amino terminal to FKBP-type peptidyl-pr


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  890.7  16.2  1.4e-271  3.6e-268       1     597 [.       4     602 ..       4     604 .. 0.99

  Alignments for each domain:
  == domain 1  score: 890.7 bits;  conditional E-value: 1.4e-271
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTT.SEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkk.erlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkav 98 
                 +iGiDLGttns+va+m+g++++v++n+eg+rttPs++a+t++ e lvG++Akrqavtnp+nt+f++KrliGr+f+d+evq++++ +pyk+v+++ng+a+
  CTQ26346.1   4 IIGIDLGTTNSCVAIMDGTTARVLENAEGDRTTPSIIAYTQDgETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIVAADNGDAW 102
                 69************************************************************************************************* PP

                 EEEEETTEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSSX CS
       HSP70  99 veveaagekftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGggt 197
                 ++v+  g k +p qisa vLkk+k+tae+ylg++vt+avitvPaYfndaqRqatkdAg+iAGL+v Ri+NepTAaalaYGldk+  +r+++vyDlGggt
  CTQ26346.1 103 LDVK--GTKTAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGT 199
                 ****..99******************************************************************************************* PP

                 EEEEEEEEE..TT..EEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTT.EEEEE CS
       HSP70 198 fdvSilele..kG..vfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedg.kdlse 291
                 fd+Si+e++  +G  +fev+aT+gDthlGGedfD++l+++lv+efkk++gidl++d+ a+qrlkeaaekaK+eLSs++qt++nl+++t+d++g k++++
  CTQ26346.1 200 FDISIIEIDevDGekTFEVLATNGDTHLGGEDFDTRLINYLVDEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGpKHMNI 298
                 ********95646668*********************************************************************************** PP

                 EEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEBE CS
       HSP70 292 klsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllDvt 390
                 k++Rak+e+lvedl++r +ep++ al+da+l++++i++v+lvGG+tR+P+vq++v e+fgkep+k+vnpDeavaiGAAvq+gvl+g  +vkd+lllDvt
  CTQ26346.1 299 KVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDINDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTG--DVKDVLLLDVT 395
                 **************************************************************************************..*********** PP

                 SS-EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTC CS
       HSP70 391 pLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketg 489
                 pLslgiet+ggvmt li++nttiptk+sqvfsta+dnq+av+i+vlqger+ ++dnk+lg+f+ldgi+paprG+pqieVtfdida+Gil+vsakdk++g
  CTQ26346.1 396 PLSLGIETMGGVMTALISKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 494
                 *************************************************************************************************** PP

                 CEEEEEEECCSSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHCHTTSSCHHHHHHHHHHHHH CS
       HSP70 490 keeeitieaseglseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleeeaekvseaekekvesaieeLkeeleeeekeeieakteelkk 588
                 ke++iti+as+gl+eeei+kmv++ae++ae+d+k +e ++++n+ ++l++s++k++ee+++k+++++k+++esa+++L+++l++e+k++ieak+++l++
  CTQ26346.1 495 KEQKITIKASSGLNEEEIQKMVREAEANAESDRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALESSLKGEDKADIEAKMQALAQ 593
                 *************************************************************************************************** PP

                 HHHHHHHHH CS
       HSP70 589 vvekiaekl 597
                 +++k++e +
  CTQ26346.1 594 ASQKLMEIA 602
                 ****99865 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0017       4.4       3      48 ..       4      56 ..       2      73 .. 0.63
   2 !   47.2   0.7   5.1e-16   1.3e-12      74     316 ..     116     376 ..     110     381 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0017
                EEEEEE-SSEEEEEETT..TEEEEEE.......ES-EEEETTT--EEEESHHHHT CS
    MreB_Mbl  3 dlgiDLGtantlvyvkg..kgivlne.......psvvAikkktkkvlavGeeAkk 48
                 +giDLGt+n  v + +  +  vl++       ps++A++++ +++  vG+ Ak+
  CTQ26346.1  4 IIGIDLGTTNSCVAIMDgtTARVLENaegdrttPSIIAYTQDGETL--VGQPAKR 56
                59********999765512345665323333337777777776654..5666654 PP

  == domain 2  score: 47.2 bits;  conditional E-value: 5.1e-16
                 HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EE.EEEE-SS-EEEEEEETTEEEEEE CS
    MreB_Mbl  74 aeellkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnm.vvdiGggttevavislggivtsk 171
                  +e+lk++ k +++    + ++ vi+vP   ++ +r+A k+a + aG +   +i+ep aAA+  gl+ e  + ++ v d+Gggt ++++i + ++   k
  CTQ26346.1 116 SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKEVGNRTIaVYDLGGGTFDISIIEIDEVDGEK 214
                 56677777777776666788899*****************************************99988766655378************999875555 PP

                 EES-.........SHHHHHHHHHHHHHHHHSEE--.............HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHH CS
    MreB_Mbl 172 svrv.........aGdeldeaiikyirkkynlliG.............ertaekikieigsavkeeeeekmeikGrdlvtglpkevevsseevrealke 248
                 +  v         +G+++d  +i+y+  +++   G             ++ aek kie++sa +++ +        d +     +++v+ +++++ +++
  CTQ26346.1 215 TFEVlatngdthlGGEDFDTRLINYLVDEFKKDQGidlrndplamqrlKEAAEKAKIELSSAQQTDVNLP--YITADATGPKHMNIKVTRAKLESLVED 311
                 44322222222229************99997554422222222222224578888999888887776652..334455555667899999********* PP

                 HHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHH CS
    MreB_Mbl 249 pvsaiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtg 316
                  v++ +e +k +L+++    ++di    ++l+GG + +  ++k + e +g + +   +p ++va G++
  CTQ26346.1 312 LVNRSIEPLKVALQDAGLS-VSDIN--DVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAA 376
                 *************998755.57885..59999******************99999999****999986 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     2e-06    0.0051     139     196 ..     305     381 ..     284     383 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2e-06
      FGGY_C 139 lealekd..................sgkpldrlavdGGgskndllmqllAdilg.vpVerpktaeatalGaAilAav 196
                 le+l +d                  s ++++ ++++GG+++ +++++  A+ +g  p + + ++ea+a+GaA+ ++v
  CTQ26346.1 305 LESLVEDlvnrsieplkvalqdaglSVSDINDVILVGGQTRMPMVQKKVAEFFGkEPRKDVNPDEAVAIGAAVQGGV 381
                 455544445555555555566666667789************************888888999**********9987 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.3     0.008        20       1      26 [.       5      27 ..       5     178 .. 0.69
   2 ?    9.1   0.2   0.00065       1.7       2      87 ..     192     360 ..     191     377 .. 0.65
   3 ?    0.0   0.5      0.44   1.1e+03      30      71 ..     504     561 ..     481     622 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.008
                EEEEE-SSSEEEEEEETTEEEEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvhlrvi 26
                +++D+G++ ++va++++      rv+
  CTQ26346.1  5 IGIDLGTTNSCVAIMDGT---TARVL 27
                58*************995...34444 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00065
                 EEEE-SSSEEEEEEETTEEEE.....................EEEES--HHHHHHH..........HHHHHT--HHHHHHHHHHH--S--......... CS
                 xxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxx......... RF
        FtsA   2 lvDiGagktdvavaedgalvh.....................lrvigvggngitkd..........iakalrtaveeAerikikyGsala......... 60 
                 + D+G+g+ d++++e +++                       +r i++  + ++kd          ++   +   e+Ae+ ki+  sa +         
  CTQ26346.1 192 VYDLGGGTFDISIIEIDEVDGektfevlatngdthlggedfdTRLINYLVDEFKKDqgidlrndplAM---QRLKEAAEKAKIELSSAQQtdvnlpyit 287
                 669*************9988888866666666666666666666666644444444666655546444...5555667777777777777777777777 PP

                 .........EEEEEHHHHH...................................GGGGSTTHHHHHHHHH..T CS
                 .........xxxxxxxxxx...................................xxxxxxxxxxxxxxxx..x RF
        FtsA  61 .........ekeigrkels...................................ggsalpnleelaeral..s 87 
                          + +++r++l+                                   g++ +p +++ +++ +  +
  CTQ26346.1 288 adatgpkhmNIKVTRAKLEslvedlvnrsieplkvalqdaglsvsdindvilvgGQTRMPMVQKKVAEFFgkE 360
                 7777765554444444443777777777777777778888888888888888888888888888777777543 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.44
                 HHHHHHH.HHHHHT--HHHHHHHHHHH--S--EEEEEHHHHH................G CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................x RF
        FtsA  30 gngitkd.iakalrtaveeAerikikyGsalaekeigrkels................g 71 
                 ++g++++ i+k++r+a ++Ae+   k+  ++++++ g + l+                +
  CTQ26346.1 504 SSGLNEEeIQKMVREAEANAESDR-KFEELVQTRNQGDHLLHstrkqveeagdklpadD 561
                 555555568888888888888766.2222222222222222244444444444455552 PP

>> Lant_dehydr_C  Lantibiotic biosynthesis dehydratase C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.4   6.2e+03      57      93 ..     112     151 ..     109     155 .. 0.70
   2 ?    9.0   2.7   0.00035      0.88     127     270 ..     466     613 ..     465     629 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.4
                    ..EHHHTHHHHHHHHHHHHHHHS-----S....GGGHHHHH CS
  Lant_dehydr_C  57 psaleaevlprleeavadllaerpslaev....ealselyg 93 
                    p++  aevl+++++  +d+l e p +++v     ++++ ++
     CTQ26346.1 112 PPQISAEVLKKMKKTAEDYLGE-PVTEAVitvpAYFNDAQR 151
                    5577899999999999999999.554444466666666555 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00035
                    ....HHHHHHHHHHHHHHHHHH..HHHHTT--HHHHHHHHHHHH..........SSSS-HHHHH..HHHHHHHHHHHHTSTTHHH........... CS
  Lant_dehydr_C 127 paaielaedlFaadSravlallsservrsreqrlglalqlvdvl..........lstfgldleekvdlleryaeaflaefsdtkka.......... 202
                    p+++   e  F+ d + +l++   +++++++  +++++++ + l           + ++ + ++          +f + +++ ++           
     CTQ26346.1 466 PRGMPQIEVTFDIDADGILHVS--AKDKNSGKEQKITIKASSGLneeeiqkmvrEAEANAESDR----------KFEELVQTRNQGdhllhstrkq 549
                    7899999999999999999999..6777777777777777755532221122122222222222..........3444444443324455554443 PP

                    HHHHHHHHHHHTHHHHHHHHHHHHHHHH-SSS-SS.....HHHHHHHHHHHHHHHHHHHHHHTTS--- CS
  Lant_dehydr_C 203 lrealdrkyraqrealearlravlaaaaepesegesadlppflaewaerlrelrrrlealeasgeltl 270
                    ++ea d+  +  ++a+e++l+a++++++  e++   ad+++ ++++a++ ++l +++++ +a+++   
     CTQ26346.1 550 VEEAGDKLPADDKTAIESALTALESSLKG-EDK---ADIEAKMQALAQASQKLMEIAQQQHAQQQAGS 613
                    88888888889999999999999999995.444...45566666666666666666666655555544 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   6.1    0.0043        11     541     635 ..     514     613 ..     501     622 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0043
        FUSC 541 qllprlaaapparrellrdglaalrlgravlrLrralera....laaearaaldavlaala..frapaaarsarrlrapaaalraldaalaalaaseat 633
                  +++ + +a++++++ +++ +++ + g+ +l+  r + ++    l+a+ + a++++l+al+   + +++a  ++  +a+a+a++ l++++++  a++++
  CTQ26346.1 514 KMVREA-EANAESDRKFEELVQTRNQGDHLLHSTRKQVEEagdkLPADDKTAIESALTALEssLKGEDKADIEAKMQALAQASQKLMEIAQQQHAQQQA 611
                 444444.78888899999999999999999887666655569999999999*********988777888888888888888888888877777777766 PP

        FUSC 634 sa 635
                   
  CTQ26346.1 612 GS 613
                 55 PP

>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   2.1      0.32   8.1e+02      37      77 ..     502     530 ..     470     553 .. 0.59
   2 ?    8.9   8.6    0.0011       2.9      21      88 ..     561     628 ..     548     630 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.32
      FKBP_N  37 kgkskltdeeiqevlqalqeklqekqeeeaeknkaegeaFl 77 
                 k +s l++eeiq++++++++++++ +            +F 
  CTQ26346.1 502 KASSGLNEEEIQKMVREAEANAESDR------------KFE 530
                 33333555666666666655554444............332 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0011
      FKBP_N  21 keldkdavlaGlkdalkgkskltde.eiqevlqalqeklqekqeeeaeknkaegeaFlaenkkkeGVkt 88 
                 ++  ++  l +l+++lkg++k + e ++q++ qa q+ + e ++++ ++++a +++  a n+k ++V+ 
  CTQ26346.1 561 DKTAIESALTALESSLKGEDKADIEaKMQALAQASQKLM-EIAQQQHAQQQAGSADAQASNAKDDDVVD 628
                 5567788999********999876757777777666655.555588999999999999********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1788  (0.0997267); expected 358.6 (0.02)
Passed bias filter:                      659  (0.0367561); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 4416.07
//
Query:       CTQ26347.1  [L=377]
Description: chaperone Hsp40, co-chaperone with DnaK [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-46  157.5   0.0    3.1e-46  157.1   0.0    1.1  1  DnaJ_C           DnaJ C terminal domain
    8.1e-29   99.5   4.7    1.2e-28   98.9   4.7    1.3  1  DnaJ             DnaJ domain
    9.1e-16   58.0  17.0    1.7e-15   57.1  17.0    1.5  1  DnaJ_CXXCXGXG    DnaJ central domain
    1.1e-05   25.3  14.5    0.00041   20.2   3.0    3.1  4  Anti-TRAP        Tryptophan RNA-binding attenuator protein in
      5e-05   23.2   3.2      0.003   17.5   0.1    2.6  2  Cytochrome_C7    Cytochrome c7 and related cytochrome c
  ------ inclusion threshold ------
      0.065   13.4  17.1        1.6    9.0   0.4    4.6  4  DUF5351          Family of unknown function (DUF5351)
        0.1   12.7   0.5        0.2   11.7   0.5    1.4  1  RRM_3            RNA binding motif
       0.36   10.5   6.1       0.53    9.9   0.9    2.3  2  TackOD1          Thaumarchaeal output domain 1
       0.42   10.7  10.3       0.99    9.4   1.3    2.3  2  HypA             Hydrogenase/urease nickel incorporation, met
       0.72   10.2   7.2         12    6.2   0.1    3.4  3  zinc_ribbon_9    zinc-ribbon
       0.96   10.0  11.1        3.5    8.2  11.1    2.0  1  Cytochrom_c3_2   Cytochrome c3
        1.1    9.7  13.3          6    7.3   3.6    4.2  4  Lar_restr_allev  Restriction alleviation protein Lar


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.1   0.0   2.1e-49   3.1e-46       2     148 .]     119     331 ..     118     331 .. 0.97

  Alignments for each domain:
  == domain 1  score: 157.1 bits;  conditional E-value: 2.1e-49
                 EEEEEE-HHHHHH-.EEE.EEEE.....................................................................TEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx..............................................................xxxxxxxxxxx RF
      DnaJ_C   2 eveleisleelykGktkkikikrnvi..............................................................kkekktlevki 38 
                 ++++e++lee+++G+tk+i+i   ++                                                              ++++ktl+vki
  CTQ26347.1 119 RYNMELTLEEAVRGVTKEIRIPTLEEcdvchgsgakagskpqtcptchgagqvqmrqgffavqqtcphcqgrgtlikdpcnkchghgrVEKTKTLSVKI 217
                 799******************99988*************************************************************777777****** PP

                 -TT--TT-EEEETT-SS..SS..S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-SS-EEEEEE...--TT-EEEETT-S-EET.. CS
                 xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx RF
      DnaJ_C  39 paGikdgqkirlegeGd..eeggepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptldgkvklki...tqpgevlrikgkGmpklkk 132
                 paG+++g++irl+geG+  e+g+++GDl+v+++vk+h +F+r+gn+ly+ev+i+++ a+lGg++evptldg+v+lki   tq+g+ +r++gkG+++++ 
  CTQ26347.1 218 PAGVDTGDRIRLAGEGEagEHGAPAGDLYVQVQVKQHAIFEREGNNLYCEVPINFTMAALGGEIEVPTLDGRVNLKIpgeTQTGKLFRMRGKGVKSVR- 315
                 *****************98888***************************************************************************8. PP

                 .TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxx RF
      DnaJ_C 133 pgkrGdlyvevkvefP 148
                 +g +Gdl+++v ve+P
  CTQ26347.1 316 GGAQGDLLCRVVVETP 331
                 **************99 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   4.7   8.3e-32   1.2e-28       1      63 []       5      67 ..       5      67 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 8.3e-32
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                dyYeiLgvsk+a+e eIkkaY++la+kyHPD+n++d+eae kFkei+eAye+L+d++kR++YD
  CTQ26347.1  5 DYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEILTDAQKRAAYD 67
                8*************************************************************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1  17.0   1.1e-18   1.7e-15       1      67 []     145     205 ..     145     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1.1e-18
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgk.kktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C+ C+Gsgak+g+ ++tC+tC+G G+v+++q   g+f   +q+tCp+C+G+G++i  kd+C+kC+G+g
     CTQ26347.1 145 CDVCHGSGAKAGSkPQTCPTCHGAGQVQMRQ---GFFA--VQQTCPHCQGRGTLI--KDPCNKCHGHG 205
                    *********99555***********988888...3433..689************..999******86 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   3.0   2.8e-07   0.00041       4      47 ..     137     176 ..     134     180 .. 0.87
   2 !   12.7   2.9   6.3e-05     0.093      12      42 ..     161     193 ..     161     196 .. 0.80
   3 !    9.1   3.6   0.00084       1.2      11      42 ..     182     207 ..     179     215 .. 0.89
   4 !    6.1   0.3     0.007        10      11      27 ..     196     211 ..     194     223 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.8e-07
                 S-HHHCEEE-TTTTTTSEETTE......E-TTTTTSSEEE-HHH CS
   Anti-TRAP   4 ialpeLEtkCdaCngsGkiepeeprasleCPkCsGkglipTaqG 47 
                 i++p LE+ Cd C+gsG  ++ +p+    CP C G g +   qG
  CTQ26347.1 137 IRIPTLEE-CDVCHGSGAKAGSKPQ---TCPTCHGAGQVQMRQG 176
                 78999996.***********99655...8********9988877 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 6.3e-05
                 E-TTTTTTSEETTE........E-TTTTTSSEE CS
   Anti-TRAP  12 kCdaCngsGkiepe..eprasleCPkCsGkgli 42 
                 +C++C+g+G+++           CP+C+G+g +
  CTQ26347.1 161 TCPTCHGAGQVQMRqgFFAVQQTCPHCQGRGTL 193
                 6**********999322345668*******976 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00084
                 EE-TTTTTTSEETTE......E-TTTTTSSEE CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkgli 42 
                 ++C++C+g G    +      +C kC G+g +
  CTQ26347.1 182 QTCPHCQGRGTLIKD------PCNKCHGHGRV 207
                 79*************......********965 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.007
                 EE-TTTTTTSEETTE.. CS
   Anti-TRAP  11 tkCdaCngsGkiepeep 27 
                  +C++C+g G++e + +
  CTQ26347.1 196 DPCNKCHGHGRVEKT-K 211
                 589999999999987.4 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1     2e-06     0.003      36      72 ..     130     166 ..     113     167 .. 0.79
   2 ?    5.7   0.5      0.01        15      49      56 ..     195     204 ..     168     221 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2e-06
  Cytochrome_C7  36 ekgkskkaeves.ltCgaCHdgknafsvakkaeCakCH 72 
                     +g  k++++ +  +C+ CH +  +    k ++C +CH
     CTQ26347.1 130 VRGVTKEIRIPTlEECDVCHGSGAKA-GSKPQTCPTCH 166
                    455566677778777*****999998.4689******* PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.01
  Cytochrome_C7  49 t..CgaCHdg 56 
                    +  C +CH +
     CTQ26347.1 195 KdpCNKCHGH 204
                    0335555544 PP

>> DUF5351  Family of unknown function (DUF5351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.4     0.036        54      18      28 ..     143     153 ..     142     154 .. 0.85
   2 ?    7.0   0.5    0.0044       6.5      19      28 ..     161     170 ..     156     173 .. 0.86
   3 ?    9.0   0.4     0.001       1.6      19      28 ..     183     192 ..     180     193 .. 0.90
   4 ?    2.8   0.3     0.089   1.3e+02      20      27 ..     198     205 ..     196     207 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.036
     DUF5351  18 ETCesCeGtgk 28 
                 E C+ C+G+g 
  CTQ26347.1 143 EECDVCHGSGA 153
                 77******996 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0044
     DUF5351  19 TCesCeGtgk 28 
                 TC+ C+G+g+
  CTQ26347.1 161 TCPTCHGAGQ 170
                 9999999996 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.001
     DUF5351  19 TCesCeGtgk 28 
                 TC++C+G g+
  CTQ26347.1 183 TCPHCQGRGT 192
                 9******997 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.089
     DUF5351  20 CesCeGtg 27 
                 C++C+G+g
  CTQ26347.1 198 CNKCHGHG 205
                 99999998 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.5   0.00013       0.2       6      58 ..       9      61 ..       7      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
                EEE-SSS--HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHHHHHHH CS
       RRM_3  6 lsGlnkelsredikellsklgevayvdyekgdkegevrFkedeeakkalekat 58
                + G++k    ++ik++ ++l    + d ++gdke+e +Fke +ea ++l  a 
  CTQ26347.1  9 ILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEILTDAQ 61
                56889999999*********999999****************88888877665 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.3      0.04        60      61      95 ..     130     167 ..     116     174 .. 0.71
   2 ?    9.9   0.9   0.00035      0.53      69      95 ..     177     203 ..     167     215 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.04
     TackOD1  61 krglleeelvdrirlCpsCksghlnv...revCpkCkS 95 
                  rg+ +e  + ++  C+ C+++  +     ++Cp C+ 
  CTQ26347.1 130 VRGVTKEIRIPTLEECDVCHGSGAKAgskPQTCPTCHG 167
                 46777777788889999999887765222578999985 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00035
     TackOD1  69 lvdrirlCpsCksghlnvrevCpkCkS 95 
                 ++  +++Cp+C++    +++ C kC+ 
  CTQ26347.1 177 FFAVQQTCPHCQGRGTLIKDPCNKCHG 203
                 6667899******************96 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.3   0.00067      0.99      66     102 ..     138     176 ..     108     180 .. 0.75
   2 ?    6.1   1.9    0.0074        11      69     107 ..     180     215 ..     177     217 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00067
                 EE--EEEETTTS-EEECHHH.HHS-TTTSSS.-EEEEES CS
        HypA  66 evpvkvrCreCgkefeleek.alrCpkCgsa.dveivsG 102
                 ++p   +C++C+ ++ ++ +   +Cp+C++a +v++ +G
  CTQ26347.1 138 RIPTLEECDVCHGSGAKAGSkPQTCPTCHGAgQVQMRQG 176
                 4566679*****999977744668****99867777776 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0074
                 -EEEETTTS-EEECHHHHHS-TTTSSS-EEEEESSSEEE CS
        HypA  69 vkvrCreCgkefeleekalrCpkCgsadveivsGeellv 107
                 v+ +C +C+ +++l ++   C+kC++++ ++ + + l v
  CTQ26347.1 180 VQQTCPHCQGRGTLIKD--PCNKCHGHG-RVEKTKTLSV 215
                 6789*********8866..7****9974.5566655555 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.8     0.051        76      22      29 ..     159     167 ..     138     172 .. 0.83
   2 ?    6.2   0.1    0.0084        12      23      29 ..     183     189 ..     174     191 .. 0.84
   3 ?    2.4   0.1      0.13     2e+02      21      33 ..     196     208 ..     193     210 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.051
  zinc_ribbon_9  22 v.lCPhCgg 29 
                    + +CP C+g
     CTQ26347.1 159 PqTCPTCHG 167
                    347****98 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0084
  zinc_ribbon_9  23 lCPhCgg 29 
                    +CPhC+g
     CTQ26347.1 183 TCPHCQG 189
                    7****98 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.13
  zinc_ribbon_9  21 dvlCPhCgg.gFVE 33 
                    d+ C+ C+g g VE
     CTQ26347.1 196 DP-CNKCHGhGRVE 208
                    67.****9768888 PP

>> Cytochrom_c3_2  Cytochrome c3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  11.1    0.0023       3.5       8      67 ..     144     204 ..     139     213 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0023
                     TGGGTSSSST-SSTTHHHHHHHHHHH--HH.HCHTTSST.TSSBTTSSCT...SSS-GGGTS-T CS
  Cytochrom_c3_2   8 kCadCHtkekpkkdkaveeekClsCHgkle.elakktkeakeanphkshe...keleCteCHke 67 
                     +C+ CH++  +   +  + ++C +CHg  + ++++     +++ ph +      +  C++CH +
      CTQ26347.1 144 ECDVCHGSGAK---AGSKPQTCPTCHGAGQvQMRQGFFAVQQTCPHCQGRgtlIKDPCNKCHGH 204
                     7******9996...4567899*****98762444444444777777766522245569999954 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   3.5       1.9   2.8e+03       2      15 ..     141     154 ..     140     165 .. 0.77
   2 ?    2.9   0.2       0.1   1.5e+02       5      20 ..     161     176 ..     157     182 .. 0.83
   3 ?    7.3   3.6     0.004         6       5      19 ..     183     197 ..     179     203 .. 0.86
   4 ?    2.7   0.3      0.11   1.6e+02       5      20 ..     197     212 ..     195     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.9
  Lar_restr_allev   2 eLkpCPfCggravl 15 
                      +L+ C+ C g + +
       CTQ26347.1 141 TLEECDVCHGSGAK 154
                      6899****998765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.1
  Lar_restr_allev   5 pCPfCggravlersqr 20 
                       CP C g++ ++ +q+
       CTQ26347.1 161 TCPTCHGAGQVQMRQG 176
                      7*******99887775 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.004
  Lar_restr_allev   5 pCPfCggravlersq 19 
                       CP+C gr++l++++
       CTQ26347.1 183 TCPHCQGRGTLIKDP 197
                      7**********9976 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.11
  Lar_restr_allev   5 pCPfCggravlersqr 20 
                      pC+ C g + +e+++ 
       CTQ26347.1 197 PCNKCHGHGRVEKTKT 212
                      9******999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 2867.16
//
Query:       CTQ26348.1  [L=407]
Description: sodium-proton antiporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.9e-150  500.3  34.2   3.3e-150  500.1  34.2    1.0  1  Na_H_antiport_1  Na+/H+ antiporter 1


Domain annotation for each model (and alignments):
>> Na_H_antiport_1  Na+/H+ antiporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.1  34.2  1.8e-154  3.3e-150       2     376 .]      22     396 ..      21     396 .. 0.98

  Alignments for each domain:
  == domain 1  score: 500.1 bits;  conditional E-value: 1.8e-154
                      XXXX-HHHHHHHHHHHHHHHHHHHHSC.CHHHHHHHHT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSTTTTHHHHH CS
  Na_H_antiport_1   2 eflkseaaggilLllaavlalilansp.laesYealletelalelgelelelsleewindgLmaiFFlvvglEikrellvGeLsslrkaalpvi 94 
                      +f++s+a+ggi+L++aa+la+++an++ ++  Y+++let+++l++g+le+++++  wind+Lma+FFl++glE+krel++G+L+s+r+a++pvi
       CTQ26348.1  22 RFFSSDASGGIVLIIAAALAMVMANTSvTSGLYHSFLETPVQLRVGALEINKNMLLWINDALMAVFFLLIGLEVKRELIQGSLASRRQAVFPVI 115
                      899**********************9968899************************************************************** PP

                      HHHHHHHHHHHHHHSTTTTSTT.GGGTGSTT---HHHHHHHHTTSGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHS-TT--HHHHHHHHHHHHH CS
  Na_H_antiport_1  95 aAlgGmvvPaliylllnageea.akGwaipmaTDiAFalgvlallgkrvpaslkvfLlaLAivDDlgailviAlfYtselsllalllalvvlal 187
                      aAlgGm+vPal+yl++na+++   +Gwaip+aTDiAFalgvlallg+rvp++lk+fL+aLAi+DDlgai++iAlfYt++ls+l+l +a++++a+
       CTQ26348.1 116 AALGGMIVPALVYLAFNAQDPVaREGWAIPAATDIAFALGVLALLGSRVPTALKIFLMALAIIDDLGAIVIIALFYTHDLSMLSLGVAAAAIAV 209
                      ********************99899********************************************************************* PP

                      HHHHHHTT---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHS--S.......-HHHHHHHHHHHHHHHTHHHHHHHHHS---SSSS--ST.T CS
  Na_H_antiport_1 188 llllnrlgvrslllylllgvvlWvlvlksGvhatiaGvllallipakkklkeeesplerlehalhplvaflilPlFAlanagvslegeslseal 281
                      l++ln  gvr++ +y+l+g+vlW++vlksGvhat+aGv+++++ip+++  k+ +sp++ leh lhp+vaf+ilPlFA+anagvsl+g +l+  l
       CTQ26348.1 210 LVALNLSGVRRTGIYILVGAVLWTAVLKSGVHATLAGVIVGFMIPLEE--KHGKSPAKALEHVLHPWVAFMILPLFAFANAGVSLQGVTLAG-L 300
                      **********************************************98..5678*********************************99998.* PP

                      TSHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTT--TTS-TTTHHHHHHHHTT--HHHHHHHHHHHSTT.....HHHHHHHHHHHHHHHHHHHHH CS
  Na_H_antiport_1 282 lspvtlgivlgLvlGKplGillasllavklklaklpeglswkqllgvallaGiGFTmslfiaelafeeeeee.leeaklgiLlgsllaavlgll 374
                      +s + lgi++gL++GKplGi l+++la klk+a+lpeg+++kq+++v++l+GiGFTms+fia+laf + + + ++ aklgiL+gs+l+av+g+l
       CTQ26348.1 301 TSLLPLGIMAGLFIGKPLGISLFCWLALKLKWASLPEGTTCKQIMAVGILCGIGFTMSIFIATLAFGSVDPAlINWAKLGILIGSVLSAVVGYL 394
                      ******************************************************************9855556********************9 PP

                      TT CS
  Na_H_antiport_1 375 ll 376
                      +l
       CTQ26348.1 395 IL 396
                      86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2925.77
//
Query:       CTQ26349.1  [L=298]
Description: DNA-binding transcriptional activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-16   57.7   0.0    1.6e-15   56.8   0.0    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    1.2e-10   41.1   0.0    1.7e-10   40.6   0.0    1.1  1  LysR_substrate  LysR substrate binding domain
  ------ inclusion threshold ------
      0.079   12.8   0.0       0.15   11.9   0.0    1.4  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   2.7e-19   1.6e-15       2      60 .]       7      65 ..       6      65 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 2.7e-19
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++l +f +v +egs+ +AAe+L l++ +++ qik+LEe+l+ +Lf R+grgl++ e Ge
  CTQ26349.1  7 NHLYYFWHVYKEGSVVGAAEALFLTPQTITGQIKALEERLQGKLFKRKGRGLEPSELGE 65
                79*****************************************************9996 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   2.9e-14   1.7e-10       9     199 ..      96     284 ..      90     287 .. 0.90

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 2.9e-14
                     EEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS...CCTTEEEEEEEEEEEE.EEEETTSGGGGSSSECGG CS
  LysR_substrate   9 rigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp...edsglearpLaeeplv.lvaspdhpLargepvsle 99 
                      +g+ ++l+ +l+  +l +   +  +++l+  e++ e ll++l +++lD+ i   p+   +++gl +++++e  +  +++ p+ p    +p  ++
      CTQ26349.1  96 DVGVADALSKRLVSGVLDAAVVESEQIHLRCFESTHELLLEQLSQHKLDMIISDCPIdstQQEGLFSVKIGECSVSfWCMNPA-P---TKPF-PA 185
                     58999******************************************************************999861555566.5...5555.88 PP

                     GGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCCH CS
  LysR_substrate 100 dLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrels 194
                      L++ +l+   + s l + l+++   +glk+++  e+++++ ++a+ aa   i ++p+++++d+  d  +v +   +  +  e+++++ ++  + 
      CTQ26349.1 186 CLEERRLLIPGRRSMLGRKLLNWINVQGLKVEILGEFDDAALMKAFGAAHNAIFVAPTLYAHDFYHDESIVEIGRMD-SVMEEYHAIFAERMIQH 279
                     899999999999999**********************************************9999998888444444.777************** PP

                     HHHHH CS
  LysR_substrate 195 pavra 199
                     pav++
      CTQ26349.1 280 PAVQR 284
                     ***97 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.5e-05      0.15      12      41 ..      18      47 ..      13      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.5e-05
                TT-HHHHHHHHTS-HHHHHHHHHHHHHHHS CS
      HTH_30 12 ggnisatAkaLhvHrnTlryRLrrieellg 41
                 g++  +A+aL++ ++T++  ++ +ee l+
  CTQ26349.1 18 EGSVVGAAEALFLTPQTITGQIKALEERLQ 47
                689999*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2335.81
//
Query:       CTQ26350.1  [L=87]
Description: 30S ribosomal subunit protein S20 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-27   95.8  16.1      2e-27   95.6  16.1    1.0  1  Ribosomal_S20p  Ribosomal protein S20
  ------ inclusion threshold ------
        5.3    7.1  11.3        2.1    8.5   4.2    2.0  2  ABC_tran_Xtn    ABC transporter


Domain annotation for each model (and alignments):
>> Ribosomal_S20p  Ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6  16.1   2.2e-31     2e-27       1      82 []       2      84 ..       2      84 .. 0.99

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 2.2e-31
                    ..SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC.-HHHHHHHHHHHHHHHHHHHCTTSSTCCHHHHHHHHHHHHHH CS
  Ribosomal_S20p  1 ANikSakKrirqnekrrlrNrsyksavrtaiKkvraaiea.dkekaqealkkaiskidkaakkgvihkNtAaRkkSrlakkin 82
                    ANikSakKr+ q+ek+r++N s++s++rt+iKkv aaiea dk++aq+a+++++  +d+ a+kg+ihkN+AaR+k++l+++in
      CTQ26350.1  2 ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAgDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQIN 84
                    9*************************************999***************************************997 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   4.2   0.00023       2.1      21      73 ..       6      57 ..       4      59 .. 0.87
   2 ?    7.6   3.6   0.00042       3.7      29      69 ..      40      82 ..      33      87 .] 0.76

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00023
  ABC_tran_Xtn 21 ekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLekleki 73
                    ++r  q +ka++ +  ++  ++ fI++  a a +a    + +ka++ ++ i
    CTQ26350.1  6 SAKKRAVQSEKARKHNASRRSMMRTFIKKVYA-AIEAGDKAAAQKAFNEMQPI 57
                  567888899999999999999*********99.99999999999999999865 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00042
  ABC_tran_Xtn 29 qqkayekqqkeikkleefIerfraka..kkakqaqsrekaLek 69
                  ++ + ++ qk  ++++ +++r +ak+   k k+a+ +     +
    CTQ26350.1 40 EAGDKAAAQKAFNEMQPIVDRQAAKGliHKNKAARHKANLTAQ 82
                  56678899*****************988777777766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1273  (0.0710023); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 716.80
//
Query:       CTQ26351.1  [L=100]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.019   15.1   0.0      0.027   14.6   0.0    1.2  1  Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein


Domain annotation for each model (and alignments):
>> Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.5e-06     0.027      63      98 ..      39      75 ..      29      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.5e-06
  Rad21_Rec8_N 63 vvriyskkvkyllsDceealekikkafksikea.kid 98
                  +vr+y  +++ l sDc++a + ++++f + ++a k+ 
    CTQ26351.1 39 IVRVYLVQLSTLTSDCTSATKVLRNSFTQREKAgKLA 75
                  8*************************99765444655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 818.21
//
Query:       CTQ26352.1  [L=312]
Description: bifunctional riboflavin kinase and FAD synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-58  197.2   0.0    1.9e-58  196.8   0.0    1.2  1  FAD_syn          FAD synthetase
    1.6e-38  131.4   0.0    2.5e-38  130.8   0.0    1.3  1  Flavokinase      Riboflavin kinase
    0.00013   22.2   0.0    0.00041   20.6   0.0    2.0  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> FAD_syn  FAD synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.8   0.0   3.2e-62   1.9e-58       3     158 .]      12     167 ..      10     167 .. 0.99

  Alignments for each domain:
  == domain 1  score: 196.8 bits;  conditional E-value: 3.2e-62
     FAD_syn   3 eedegavvtlGnFDGvHlGHqallkkaveaakekglpsvvvtFephPrevlakekaparLttleeklelleelgvdavlvvdFtkefaelsaeeFiekl 101
                 ++++g+v+t+GnFDGvH+GHqall++++e+ +++glp+vv++Fep+P e++a++kaparLt+l+ekl +l+e gvd+vl+v+F+++fa+l+a++Fi++l
  CTQ26352.1  12 QAPHGCVLTIGNFDGVHRGHQALLQRLREEGRQRGLPVVVMIFEPQPLELFAADKAPARLTRLREKLGYLAESGVDYVLCVRFDRRFAALTAQDFISEL 110
                 6789*********************************************************************************************** PP

     FAD_syn 102 lveklkvkavvvGfdfrfGkkregdvellkelgaklgfevevvpkveleeekissta 158
                 lv++l+v++++vG+dfrfG++r+gd+ ll+++ga++gf+v++++++++++++issta
  CTQ26352.1 111 LVRRLGVQFLAVGDDFRFGAGRQGDFLLLQKAGAEYGFDVTSTQTFCEGGVRISSTA 167
                 *******************************************************95 PP

>> Flavokinase  Riboflavin kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.0   4.2e-42   2.5e-38       1     111 []     184     306 ..     184     306 .. 0.95

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 4.2e-42
                  HTS-EEEEEEEES-SSCHTTTT--EEEEE-.S-B-GTSEEEEEEEE........EEEEEEEETTTSSE...EEEEETT--S--TTSEEEEEEEEEEEE CS
  Flavokinase   1 LgrpyslsgkVvkGkkrGrelgfpTaNlel.ekllpkkGVYavrvk........gvaniGvrptfknk...vEvhildfsedlygkelrvellkflRp 86 
                  Lg+p+s+sg+Vv+G+++Gr++gfpTaNl+l +++ p kGVYav+v+        gvaniG+rpt+ +    +Evh+ld+  dlyg++++v l k++R+
   CTQ26352.1 184 LGHPFSISGRVVHGDELGRTIGFPTANLPLrRQVSPVKGVYAVEVTglgdkpiaGVANIGTRPTVAGVrqqLEVHLLDVVMDLYGRHINVILRKKIRN 281
                  89****************************66666*****************************98744579************************** PP

                  ----SSHHHHHHHHHHHHHHHHHHH CS
  Flavokinase  87 ekkFdsleaLkaqikkDvekarell 111
                  e++F+sl++Lkaqi++D  +arel+
   CTQ26352.1 282 EQRFASLDELKAQIARDELTARELF 306
                  ********************99875 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   6.9e-08   0.00041       1      41 [.      19      62 ..      19     171 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 6.9e-08
                     EEEE--TT--HHHHHHHHHHHHHSSES...EEEEEESSTHCSST CS
  CTP_transf_like  1 lagGtFDpiHlGHlrlleqakklleed...livgvpsdeppkkk 41
                     l+ G+FD +H GH +ll+++++++ +    ++v++  ++p   +
       CTQ26352.1 19 LTIGNFDGVHRGHQALLQRLREEGRQRglpVVVMIFEPQPLELF 62
                     578*************************9888888777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2388.58
//
Query:       CTQ26353.1  [L=950]
Description: isoleucyl-tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.2e-229  761.8   0.0     5e-229  761.5   0.0    1.0  1  tRNA-synt_1    tRNA synthetases class I (I, L, M and V)
    3.2e-29  101.8   0.0    5.4e-29  101.1   0.0    1.3  1  Anticodon_1    Anticodon-binding domain of tRNA
      2e-19   69.6   0.1    3.1e-10   39.4   0.0    3.5  3  tRNA-synt_1g   tRNA synthetases class I (M)
    2.1e-09   37.0   3.1    2.1e-09   37.0   3.1    1.9  2  zf-FPG_IleRS   Zinc finger found in FPG and IleRS
      1e-08   34.9   0.0    3.1e-06   26.8   0.0    2.3  2  tRNA-synt_1e   tRNA synthetases class I (C) catalytic domain
    2.5e-06   26.7   0.1    1.3e-05   24.3   0.0    2.1  3  tRNA-synt_1f   tRNA synthetases class I (K)
      7e-05   22.4   0.0    0.00013   21.6   0.0    1.3  1  tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
  ------ inclusion threshold ------
       0.13   12.3   0.0         17    5.4   0.0    2.4  2  PAPS_reduct    Phosphoadenosine phosphosulfate reductase fami


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  761.5   0.0  2.2e-232    5e-229       2     601 ..      40     652 ..      39     653 .. 0.98

  Alignments for each domain:
  == domain 1  score: 761.5 bits;  conditional E-value: 2.2e-232
  tRNA-synt_1   2 lyekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgree 99 
                  ++++W+++d++   ++++k kk+fil+dgPPy++Gs+HiGh+++k+lkdi++++k ++G++++yvpGwD++Gl+ie kve+++g+ ++    k++++e
   CTQ26353.1  40 MLARWTDDDLYGIIRAAKKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLTGYDSPYVPGWDCHGLPIELKVEQEYGKPGE----KFTAAE 133
                  6899********************************************************************************9997....****** PP

  tRNA-synt_1 100 frekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkkdalihvafpladk 197
                  fr+k+re++ae+++ +rk++ rlGv  D++++ylT+d+++e+++++++++++ +g++++g+k+v+w++++++al+e+Evey+dk++++i+vaf++ dk
   CTQ26353.1 134 FRAKCREYAAEQIDGQRKDFIRLGVLGDWSHPYLTMDFKTEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFHAVDK 231
                  ***********************************************************************************************888 PP

  tRNA-synt_1 198 ee.............vklviaTTtPeTllgdtavavnpeldyv...itkeklilaeallkslvkke..sekkiledergkeLegkevelplvnrkipi 277
                  ++             v+lvi+TTtP+Tl++++a+++ pe+dy+   +++++lila++l++s++k+   ++++il  ++g+eLe  ++++p+ + ++p 
   CTQ26353.1 232 AAvlakfgvadvngpVSLVIWTTTPWTLPANRAISLSPEFDYAlvqVDGQALILAKDLVESVMKRVgaTDYTILAAVQGSELELMRFKHPFLDFDVPA 329
                  888999999999999****************************9999******************986777*************************** PP

  tRNA-synt_1 278 iaddyvdkeaGtGvVkiaPahdedDyevgkkynlevinildedgtlteea.aefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkpiiy 374
                  i +d+v+ +aGtG+V++a +h++dDy++++ky+le++n++  dg +   + +  +g++vf+a++++ve l+e+g+ll++ek +hs+p+c+r+k pii+
   CTQ26353.1 330 ILGDHVTLDAGTGAVHTAGGHGPDDYTISQKYGLEIANPVGPDGAYLPGTwPSLDGINVFKANDIIVEMLRERGALLHVEKLQHSYPCCWRHKSPIIF 427
                  *********************************************9998779********************************************** PP

  tRNA-synt_1 375 rateqWfvrvke..ladaalkavekvqfvpkskekryaswleniqdWciSRqrwWGhriplfvsketeevvvre.elkelvagreeeeaekkalekea 469
                  rat+qWfv++++  l++++lk+++ vq++p+++++r++s+++n++dWciSRqr+WG++++lfv+ket e++ r+ el+e va+r+e ++ +++++ ++
   CTQ26353.1 428 RATPQWFVSMDQkgLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHKETHELHPRTlELMEEVAKRVEVDGIQAWWDLDS 525
                  ***********999***********************************************************99*********************** PP

  tRNA-synt_1 470 kdklkkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKs 567
                   d l+++++++ek++d+lDvWF+Sgs+++s+++     ++e++  ++adm+leG+D++rgW+++++++s+a++g++P+++vl+hg+++d++GrKmSKs
   CTQ26353.1 526 RDILGDDADSYEKVPDTLDVWFDSGSTHSSVVD----VRPEFA-GHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKS 618
                  *********************************....489**9.****************************************************** PP

  tRNA-synt_1 568 lgNvidpldvikkygadalRltlilsdvgrdinl 601
                  +gN+++p+dv++k+gad+lRl+++++d++ ++++
   CTQ26353.1 619 IGNTVSPQDVMNKLGADILRLWVASTDYTGEMAV 652
                  *****************************99986 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   0.0   2.4e-32   5.4e-29       1     150 [.     697     852 ..     697     854 .. 0.89

  Alignments for each domain:
  == domain 1  score: 101.1 bits;  conditional E-value: 2.4e-32
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk.ra.aqevllevletllrllaPfmPfitEelwqreeeel 96 
                  drw++   + + +++ +aye+y+f++++++l+ f++ ++ ++yl+++k+r y+++a++  r+ +q++l++++e+l+r++aP+m f+++e+w    + l
   CTQ26353.1 697 DRWAVGCAQAAQEDILKAYESYDFHEVVQRLMRFCSIEMGSFYLDIIKDRQYTAKADSVaRRsCQTALFHIVEALVRWMAPIMSFTADEIW----GYL 790
                  9****************************************************999777*888****************************....555 PP

  Anticodon_1  97 ..gkkesimlaewpe.kaeel.ekel.e....eeevellkeivkairklrselkikpsselkv 150
                    ++++ ++  ew e     l ++e+ +    +e ++++ e++k+i+++r+++k++ s e+ v
   CTQ26353.1 791 pgEREKYVFTGEWYEgLF-GLaDDEAmNddfwDELLKVRGEVNKVIEQARADKKVGGSLEAAV 852
                  433458999999*98444.44555554357999***********************9999876 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   1.4e-13   3.1e-10       8      67 ..      70     129 ..      66     216 .. 0.65
   2 !    7.2   0.1   0.00083       1.9     157     238 ..     404     487 ..     392     498 .. 0.71
   3 !   18.4   0.0   3.2e-07   0.00071     310     356 ..     596     643 ..     577     657 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 1.4e-13
                   B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHH CS
  tRNA-synt_1g   8 pYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelv 67 
                   pYang++H+Gh ++ i  Di+++ k l+g++  +v g D hG pielk e+e  +p e  
    CTQ26353.1  70 PYANGSIHIGHSVNKILKDIIVKSKGLTGYDSPYVPGWDCHGLPIELKVEQEYGKPGEKF 129
                   9***********************************************998755554322 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00083
                   SB-E..................EEE.EEEEEE-GGGGHHHHHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SSS-EET CS
  tRNA-synt_1g 157 kkleptelin..pksaisgskpevketehlffklskfekklkewieeeekeleenvkkivkewlkegLkdlaisrdldwGipvP 238
                   + l+ ++l+   p +   +s  +++ t ++f ++++   + ++  e +  ++     +   e + ++  d++isr+  wG+p+ 
    CTQ26353.1 404 ALLHVEKLQHsyPCCWRHKSPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMS 487
                   55555566551144444555558999999999999988888888877777776666666555555569*************986 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 3.2e-07
                   ---S-EEEE--.EEE--------------HHHHHHHH-HHHHHHHHHH CS
  tRNA-synt_1g 310 klpkkvvahey.ltvegkKlSkSrgvvvkakealerldadllRYylaa 356
                      ++v +h++ +  +g+K+SkS g+ v +++++++l ad+lR ++a+
    CTQ26353.1 596 APYRQVLTHGFtVDGQGRKMSKSIGNTVSPQDVMNKLGADILRLWVAS 643
                   34578999999446799**************************99887 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       3.5   7.8e+03       7      11 ..     418     422 ..     418     427 .. 0.80
   2 !   37.0   3.1   9.5e-13   2.1e-09       1      29 [.     910     938 ..     910     939 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.5
                   T--BB CS
  zf-FPG_IleRS   7 Cwryi 11 
                   Cwr+ 
    CTQ26353.1 418 CWRHK 422
                   ***95 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 9.5e-13
                   TSB-TTT--BBEEEECTTEEEEE-TTTT. CS
  zf-FPG_IleRS   1 GepCpRCwryiervgqagrstyfCprCqk 29 
                   Ge+CpRCw+y++++g+  ++ ++C rC +
    CTQ26353.1 910 GEKCPRCWHYTTDIGKVAEHAEICGRCVS 938
                   9**************************86 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0035       7.8      21     120 ..      74     189 ..      58     221 .. 0.72
   2 !   26.8   0.0   1.4e-09   3.1e-06     226     299 ..     586     660 ..     559     662 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0035
                   S--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-.............HHHHHHHHHHHHHHHHHHTT----SB--BGGGG CS
  tRNA-synt_1e  21 dashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeks.............vkelaekfieefkkdleaLnvlkptleprvsek 104
                     +h+Gh+ + +  Di+ +    +gYd  +v         i ++ ++e+ +             ++e a+++i+   kd+  L+vl    +p  +  
    CTQ26353.1  74 GSIHIGHSVNKILKDIIVKSKGLTGYDSPYVPGWDCHGLPIELKVEQEYGKpgekftaaefrakCREYAAEQIDGQRKDFIRLGVLGDWSHPYLTMD 170
                   579***************************9876444444445555555556666777777777777777777777777777777776666666654 PP

                   H...HHHHHHHHHHHHTTS CS
  tRNA-synt_1e 105 v...deiielvekliekgy 120
                       ++ii+ + k+i +g+
    CTQ26353.1 171 FkteANIIRALGKIIGNGH 189
                   4111356666666666666 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 1.4e-09
                   HHHHHHHSS.S--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS-TTS-EEE-HHHHHHH CS
  tRNA-synt_1e 226 laqseaafd.kqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRllllsahyrsqldfkeelleea 299
                   l  s+a+ +  ++ +   h   +  +g+kmsks++n ++ +dv++k  + +lRl ++s++y  ++  ++e l++a
    CTQ26353.1 586 LMISTAMKGkAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRA 660
                   566888888455666666777789999*******************************************99987 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.46     1e+03       3      53 ..      44      92 ..      42     104 .. 0.68
   2 ?   -3.0   0.1       1.1   2.5e+03      68      82 ..     530     544 ..     528     545 .. 0.88
   3 !   24.3   0.0   5.7e-09   1.3e-05     241     338 ..     574     670 ..     560     680 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.46
  tRNA-synt_1f  3 WadklaeklieerkkkkaekdevvvesGi.spSGliHiGnlrevltadlvar 53
                  W+d     +i+  k   ++k++ ++  G   + G+iHiG   + +  d++++
    CTQ26353.1 44 WTDDDLYGIIRAAK---KGKKTFILHDGPpYANGSIHIGHSVNKILKDIIVK 92
                  66666666773332...2455666666651467******9988777777766 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.1
  tRNA-synt_1f  68 sDdmDglRkvpenlp 82 
                    Dd D + kvp+ l+
    CTQ26353.1 530 GDDADSYEKVPDTLD 544
                   69**********987 PP

  == domain 3  score: 24.3 bits;  conditional E-value: 5.7e-09
  tRNA-synt_1f 241 GkDhaaaGgSvdvsskiaeilggeaPek..vvYelillkggekmssSkGnvltledwlevaepevlrflilrrkPkkakkldldleilrlvdeYdkl 335
                   G D +   g +  s  i+  ++g+aP+   ++  +  + +g+kms+S Gn ++++d+++ +  ++lr+ ++++  + ++ ++ +  + r+ d Y ++
    CTQ26353.1 574 GSDQHR--GWFMSSLMISTAMKGKAPYRqvLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDE-ILKRAADSYRRI 667
                   666666..6677788889999999998621344555555666***************************************999.99********99 PP

  tRNA-synt_1f 336 erk 338
                   ++ 
    CTQ26353.1 668 RNT 670
                   876 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   5.7e-08   0.00013      21     142 ..     247     371 ..     233     379 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 5.7e-08
  tRNA-synt_1_2  21 eklevfttrpdtlfGvtfvalapehplvekl..aekkkelaafieevkkksesereletkekeGv.ftglkaihPitgekipiwvanyvlmeygtg 113
                     +l ++tt p tl     ++l+pe + +      +     ++++e+v k+  ++  +  +  +G   + +   hP+ + ++p  + ++v  + gtg
     CTQ26353.1 247 VSLVIWTTTPWTLPANRAISLSPEFDYALVQvdGQALILAKDLVESVMKRVGATDYTILAAVQGSeLELMRFKHPFLDFDVPAILGDHVTLDAGTG 342
                    4678999999999999999999998876655224444445678888888888888888888899944556789*********************** PP

  tRNA-synt_1_2 114 avmavPahdqrDfeFakkynlpikqvikp 142
                    av +  +h   D+  ++ky+l+i + + p
     CTQ26353.1 343 AVHTAGGHGPDDYTISQKYGLEIANPVGP 371
                    ***********************987766 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.018        41      27      55 ..     488     517 ..     473     527 .. 0.85
   2 ?    5.4   0.0    0.0075        17     130     156 ..     771     798 ..     743     799 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.018
                  EEEEEE-STB-HHHHHHHHHHHHHTT-E.E CS
  PAPS_reduct  27 pvvfvdtghefpetiefvdeleeryglr.l 55 
                   +v+ +t + +p t+e+++e+++r++++ +
   CTQ26353.1 488 LFVHKETHELHPRTLELMEEVAKRVEVDgI 517
                  48999*******************987744 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0075
                  CEEE-.CCCT--HHHHHHHHHHCT--B- CS
  PAPS_reduct 130 slrvf.PllnWteedvwqyilrenipyn 156
                   +r++ P++ +t  ++w y+  e  +y+
   CTQ26353.1 771 LVRWMaPIMSFTADEIWGYLPGEREKYV 798
                  789999**************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 6957.17
//
Query:       CTQ26354.1  [L=166]
Description: prolipoprotein signal peptidase (signal peptidase II) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-37  129.1   7.8    1.5e-37  129.0   7.8    1.0  1  Peptidase_A8  Signal peptidase (SPase) II
  ------ inclusion threshold ------
      0.011   15.4   0.2      0.017   14.8   0.2    1.4  1  NEMP          NEMP family
      0.087   13.1   0.1       0.18   12.1   0.0    1.5  1  MscL          Large-conductance mechanosensitive channel, Msc
       0.58    9.5   5.0       0.56    9.5   4.0    1.5  1  ThrE          Putative threonine/serine exporter
        1.6    8.9   4.2         11    6.2   0.0    3.5  4  CbtB          Probable cobalt transporter subunit (CbtB)


Domain annotation for each model (and alignments):
>> Peptidase_A8  Signal peptidase (SPase) II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   7.8   4.2e-41   1.5e-37       1     138 [.      15     154 ..      15     157 .. 0.93

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 4.2e-41
  Peptidase_A8   1 lallllllDqltKllvvenlkte.svevipgffkltyveNrgaafglle..sgakrkllillslvvilllivlllkkkkkskllrialalilgGalG 94 
                   +++++l++D  +K+l+ +n+    +v ++p  ++l+y +N+gaaf++l+  +g++r++++ +++ ++++l+vl++++k+++kl +ia+ali+gGalG
    CTQ26354.1  15 VVVAVLIIDLGSKFLILQNFALGeTVPLFP-SLNLHYARNYGAAFSFLAdsGGWQRWFFSGIAIGICVVLTVLMYRSKATQKLNNIAYALIIGGALG 110
                   5899************99998865666776.8***************999999**********99999999999999889***************** PP

  Peptidase_A8  95 NliDrllygkVvDfldfsleliefpvFNvADvaitvGvilliia 138
                   Nl+Drl +g VvD++df +  ++f++FN+AD+ai++G++l++++
    CTQ26354.1 111 NLFDRLWHGFVVDMIDFYVGDWHFATFNLADSAICIGAALIVLE 154
                   ****************************************9986 PP

>> NEMP  NEMP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.2   4.6e-06     0.017      38      76 ..      71     109 ..      60     151 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.6e-06
        NEMP  38 YssgmalGillsllivlfqlmkllpk.kslfylllygswg 76 
                 ++sg+a+Gi+++l ++ ++ +k   k  +++y+l++g+  
  CTQ26354.1  71 FFSGIAIGICVVLTVL-MYRSKATQKlNNIAYALIIGGAL 109
                 579******9776555.5788999998**********973 PP

>> MscL  Large-conductance mechanosensitive channel, MscL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.1e-05      0.18      16      58 ..      98     140 ..      95     157 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.1e-05
        MscL  16 dLAvgviiGaaftkiVtslvkdiimpliglllggvdfselkik 58 
                 ++A ++iiG+a++++ + l + ++ ++i++ +g+ +f++++++
  CTQ26354.1  98 NIAYALIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLA 140
                 5799****************************88777755433 PP

>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.0   0.00016      0.56     118     172 ..      54     109 ..      44     157 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00016
        ThrE 118 aaaafallf.ggdwidflvaflagllggllrlllakrglnsfvleavaaflaslla 172
                  +aaf++l+  g+w+  + + +a ++  +l  l+ +++ ++ +++++ a++++   
  CTQ26354.1  54 YGAAFSFLAdSGGWQRWFFSGIAIGICVVLTVLMYRSKATQKLNNIAYALIIGGAL 109
                 579******9*************************************999986444 PP

>> CbtB  Probable cobalt transporter subunit (CbtB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.21   7.5e+02       5      19 ..       7      21 ..       4      40 .. 0.80
   2 ?   -0.1   0.2      0.29     1e+03      12      28 ..      70      86 ..      64      93 .. 0.79
   3 ?    0.5   0.0      0.19   6.8e+02       5      23 ..      91     109 ..      87     112 .. 0.79
   4 ?    6.2   0.0    0.0031        11      15      35 ..     142     162 ..     134     166 .] 0.85

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.21
        CbtB  5 asaqrllqlvaAllL 19
                ++  r l++v+A+l+
  CTQ26354.1  7 STGLRWLWVVVAVLI 21
                567789999999984 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.29
        CbtB 12 qlvaAllLGlllvylvg 28
                + + ++++G+++v +v 
  CTQ26354.1 70 WFFSGIAIGICVVLTVL 86
                56778999999998886 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.19
        CbtB   5 asaqrllqlvaAllLGlll 23 
                 +++q l  ++ Al++G +l
  CTQ26354.1  91 KATQKLNNIAYALIIGGAL 109
                 6778888899999999776 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0031
        CbtB  15 aAllLGlllvylvgfsqaaal 35 
                  A+++G++l+ l gf +++++
  CTQ26354.1 142 SAICIGAALIVLEGFLPKPTV 162
                 699**************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       820  (0.045736); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 1454.54
//
Query:       CTQ26355.1  [L=149]
Description: FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-15   55.6   0.0      7e-15   55.1   0.0    1.2  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   3.9e-19     7e-15       5      94 .]       5     141 ..       2     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 3.9e-19
                 B-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTT.............................. CS
      FKBP_C   5 akegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYge.............................. 73 
                 ++ ++ V vh+++kl dg++ +s+rs++kp+ f++G++ + +G+e++l g+k Gek+ ++ +p++a+g                               
  CTQ26355.1   5 VQSNSAVLVHFTLKLDDGSTAESTRSNGKPALFRLGDTSLSEGLEQQLLGLKEGEKKAFSLEPDAAFGVpspdliqyfsrrefidagepeigaimlfta 103
                 788999***************************************************************999999999999999999999999999988 PP

                 ..........TTBCTTT.......B.TTSEEEEEEEEE CS
      FKBP_C  74 ..........kglaggv.......ippnatLvFeveLl 94 
                           ++++g           ++ t++F++e+l
  CTQ26355.1 104 mdgsempgviREVNGDSitvdfnhPLAGRTVHFDIEVL 141
                 88877777663333333222333244559999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1320.09
//
Query:       CTQ26356.1  [L=316]
Description: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-92  307.0   0.0    1.1e-91  306.8   0.0    1.0  1  LYTB             LytB protein
  ------ inclusion threshold ------
        0.1   12.3   0.0        0.2   11.4   0.0    1.4  1  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai
       0.13   12.2   0.1       0.19   11.7   0.1    1.3  1  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai


Domain annotation for each model (and alignments):
>> LYTB  LytB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.8   0.0   1.8e-95   1.1e-91       1     263 [.       3     282 ..       3     283 .. 0.94

  Alignments for each domain:
  == domain 1  score: 306.8 bits;  conditional E-value: 1.8e-95
                 EEE-TT-SS-HHHHHHHHHHHHHHCCC-S.EEECS-SSS-HHHHHHHHHCTEEEESSSST.....EEEE-TT---HHHHHHHHHTTEEEEE---HHHHH CS
        LYTB   1 illaksaGfCfGVerAieiaeealeekke.vyvlgeivHNeqvverLeekgvkfieelee.....vviirAhGvskeveeelkekglevvDatCplVkk 93 
                 illa+++GfC+GV+rAi+i+e+al+ +++ +yv++e+vHN+ vv++L+++g++fie+ +e     ++i++AhGvs++v++e+k+++l+v+DatCplV+k
  CTQ26356.1   3 ILLANPRGFCAGVDRAISIVENALTLYGApIYVRHEVVHNRYVVDSLRKRGAIFIEQISEvpdgaILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTK 101
                 789****************************************************99765334557********************************* PP

                 HHHHHHHHHHCT-EEEEES-TT-HHHHHHHCC...T--TEEEESSCHHHHHG......CEEEEE-TTS-HHHHHHHHHHHHHHSTCEEE..C-S--CHH CS
        LYTB  94 vqkevkklakegyeiviiGkkkHpEvegilgq...aeekvvvveeseevekl......kvalvsQTTlsveefeeivealkkklkelev..kdtiCkat 181
                 v+ ev++++++g e ++iG+++HpEveg++gq    +  +++ve+ e+v kl      ++ +++QTTlsv++++++++al+++++++    kd+iC+at
  CTQ26356.1 102 VHMEVARASRRGEESILIGHAGHPEVEGTMGQynnPQGGMYLVESPEDVLKLevkndaRLSFMTQTTLSVDDTSDVIDALRARFPKIVGprKDDICYAT 200
                 ********************************433244599998877765556788889****************************9999******** PP

                 HHHHHHHHHHHGHSSEEEEES-TT-HHHHHHHHHHHHCSCTEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHH CS
        LYTB 182 qeRqeavkelakevdlvivvGgknSsNtkkLveiakeknkktyliesaeeldeewlegvkkvgitaGaStpeelieeviekl 263
                 ++Rqeav++la+++d+v+vvG+knSsN+++L+e+a++ +k +yli++a++++e+w++++  vg+taGaS+p+ l+++vi++l
  CTQ26356.1 201 TNRQEAVRALAEKADVVLVVGSKNSSNSNRLAELAQRMGKAAYLIDDASDIQEAWVKDAACVGVTAGASAPDILVQNVITRL 282
                 *******************************************************************************998 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.3e-05       0.2      66     103 ..     202     237 ..     188     267 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.3e-05
                   GSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTTTTTTT CS
  TPP_enzyme_M  66 hgskaanealeeaDlvlalGarfddirttgsepefape 103
                    +++a+++++e+aD+vl++G++ +  ++ ++  e a++
    CTQ26356.1 202 NRQEAVRALAEKADVVLVVGSKNSS-NS-NRLAELAQR 237
                   456677777799********87544.22.222244444 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.1e-05      0.19      41      85 ..     170     227 ..     110     277 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.1e-05
                      --S---HHHHHHHHHHH...............-HHHHHHHHHHHTSEEEEEEEES... CS
                      xxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  41 tvsylvsplegirerles.............eegideaveaakeaDvavvvvgedpei 85 
                      +v+ + ++++++r+r+++             ++ ++++ + a++aDv++vv +++++ 
       CTQ26356.1 170 SVDDTSDVIDALRARFPKivgprkddicyatTNRQEAVRALAEKADVVLVVGSKNSSN 227
                      444555778888888888************5444455556688999999999988544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2652.64
//
Query:       CTQ26357.1  [L=304]
Description: ribonucleoside hydrolase 3 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-82  277.9   0.2    1.4e-82  277.7   0.2    1.0  1  IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase


Domain annotation for each model (and alignments):
>> IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.7   0.2   7.7e-87   1.4e-82       2     304 ..       4     293 ..       3     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 277.7 bits;  conditional E-value: 7.7e-87
                   EEEEEE--SHHHHHHHHHHHCTHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHHCTTT.S-EEEE-SS-SSSS.S-SHHHHTTTSSTSS-.--SSHC CS
  IU_nuc_hydro   2 kvilDtDpGiDDalAlllalaespeiellgittvaGnvsleqatrnalrvlealggrddipvyaGaekpllre.kaaaeihGedGlgdvllpeperk 97 
                   ++ilDtDpGiDDa A++ al + pe++l   ttvaGnvs+e++trnal++l ++ ++d +p ++Ga+ pl+r+ ++aa +hGe+G+ + +  e +r+
    CTQ26357.1   4 PIILDTDPGIDDAAAIAAALFA-PELDLQLMTTVAGNVSVEKTTRNALQLL-HFWNAD-VPLAQGASMPLVRPlRDAASVHGESGMEGYDFVEHQRQ 97 
                   79*****************996.****************************.666455.**************999999*******88877777788 PP

                   SCSSHHHHHHHHHHHHCHHTTTTEEEEECS-SHHHHHHHHHTCCHHHHEEEEEEE---SSS--SSSSSS-HHHHHSHHHHHHHHHT.S-E.EEEE-H CS
  IU_nuc_hydro  98 aesesavdalidaveaareypgevtlvatGplTNiAlalrldpelakkvkrlviMGGaftarGNvtpvaEfNifvDPeAAkiVles.apvkitlvpl 193
                   + ++ a +a+ da++ a+e    +tlva+GplTNiAl+l+++pe + +++rlviMGG+ + rGN tp aEfNi +DPeAA+ V++s  +  i++++l
    CTQ26357.1  98 PLAKPAFQAIRDALMHAAE---PITLVAIGPLTNIALLLTQYPECVFNIRRLVIMGGSAG-RGNFTPNAEFNIAIDPEAAAKVFHSgLE--IVMCGL 188
                   88889********955544...4***********************************98.***********************97655..5***** PP

                   HHHTTSCHEECHHHHHHHHCSTCBHHHHHHHHHHHHHHHHHHHHHSSEEE-HHHHHHHHHH-GGGEEEEEEEEEEESSSSTTTTEEEEETSTT.TTS CS
  IU_nuc_hydro 194 dvthkvqalltseeveelaalekglgafladllefyikaykeaegsdgaplhDplavavaldpelvttkrlavdveleggltrGrtvvdlrrl.kka 289
                   dvt+  +all+ + +++l +l +++g++l++l+++y    ++ + s g  +hD +a+a++ +pel+t +++ v ve++g+ t G+tvvd +++ +++
    CTQ26357.1 189 DVTN--RALLAADYLATLPML-NQTGKMLHALFSHY----RSGSMSSGLRMHDLCAIAWLARPELFTLQPCFVAVETQGTWTAGTTVVDIEGRlGQP 278
                   ****..989999999998887.44443666665555....5566689************99*****99************************99*** PP

                   --EEEEEEE-HHHHH CS
  IU_nuc_hydro 290 knvkvatevdverfl 304
                   +n++va ++dve f 
    CTQ26357.1 279 ANAQVALDIDVEGFQ 293
                   ************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2372.09
//
Query:       CTQ26358.1  [L=121]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-21   77.1   3.8    1.3e-21   77.0   3.8    1.1  1  DUF805           Protein of unknown function (DUF805)
  ------ inclusion threshold ------
       0.18   11.2   0.0       0.22   10.9   0.0    1.1  1  Hexose_dehydrat  NDP-hexose 2,3-dehydratase


Domain annotation for each model (and alignments):
>> DUF805  Protein of unknown function (DUF805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   3.8   1.5e-25   1.3e-21       2      98 ..      15     119 ..      14     121 .] 0.87

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 1.5e-25
      DUF805   2 fdfkGRasRsefwwfvlfllllvivlallaavlaa........aavasalsvvlallllvpslavtvRRlHDtgrsgwllllllv.plialllllvlll 91 
                 f+f+GRasR++fw f+l+++l+ ++ ++  ++++         + v   ++ +++ll+ +p lav  RR+HD+grsg++++l+++ p++a ++ l l++
  CTQ26358.1  15 FNFSGRASRQQFWTFFLINVLIAAAPVAAWSLATLvdpqygilSFVVIPFAALWLLLMALPLLAVGCRRMHDIGRSGIWFVLGVIiPWFA-IISLPLCC 112
                 9********************9999666666665588999999888999999999**************************999845554.88999*** PP

      DUF805  92 lpgtpge 98 
                 l++ p +
  CTQ26358.1 113 LRSAPAP 119
                 9999876 PP

>> Hexose_dehydrat  NDP-hexose 2,3-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.4e-05      0.22      29      92 ..      10      73 ..       4      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.4e-05
  Hexose_dehydrat 29 gWsleedtniahesgrfFsVegveveaeereveeWtqPlieqpeigilgllvkeidgvlhfLvq 92
                     gW+ + +   + ++++f++   ++v +   +v++W+   +  p+ gil+++v  +   + +L++
       CTQ26358.1 10 GWKETFNFSGRASRQQFWTFFLINVLIAAAPVAAWSLATLVDPQYGILSFVVIPFAALWLLLMA 73
                     56555555556778899999*********************************99999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 965.02
//
Query:       CTQ26359.1  [L=309]
Description: putative HTH-type transcriptional regulator LtrA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-40  137.6   0.6    5.3e-40  137.0   0.6    1.3  1  LysR_substrate  LysR substrate binding domain
    3.8e-19   68.4   0.1    6.9e-19   67.6   0.1    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0077   16.1   0.1      0.019   14.8   0.1    1.6  1  MarR_2          MarR family
  ------ inclusion threshold ------
      0.011   15.2   0.9      0.036   13.5   0.0    2.3  2  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.027   14.6   0.1       0.11   12.7   0.0    2.0  2  HTH_28          Helix-turn-helix domain
      0.097   12.3   0.0       0.19   11.4   0.0    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.6   1.8e-43   5.3e-40       4     207 ..      92     296 ..      89     298 .. 0.97

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 1.8e-43
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSEC CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gepvs 97 
                      +g+L++++p +++r ++ pl+ +f  ryP+v++ l+ +d  + ld +++g +Dla+r  + +++gl+  pL+  ++v++a +++ L + g+p +
      CTQ26359.1  92 AQGKLTLSVPKAVGRFVIHPLMMAFFHRYPQVDVCLRLED--RPLDFIDDG-IDLALRITDTPSPGLHGKPLMPIRHVICATEAY-LQQhGTPHT 182
                     68**************************************..*********.*********************************.***9***** PP

                     GGGGCTSEEEEESTTST.HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESST....TCEEEEEEEE CS
  LysR_substrate  98 ledLadeplilleegsg.lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpep....plprelylvy 187
                     ++dL+ + +i l e  +  r+ +++  + + ++  +++ +n+++  l++v++ lGi+ lp +++r++la+g++v   lpe+     ++ +l+l++
      CTQ26359.1 183 PQDLRAHSCISLGETPAdARWKFRREGKTETVQTYGRYAANHTAVRLDAVRQHLGIGSLPLFTAREALANGDIV-QALPEWefisSYSGDLWLLW 276
                     ************766666********************************************************.*********7778******* PP

                     ETTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflrea 207
                       ++++++++ra+id+l e 
      CTQ26359.1 277 AGDKHMPARMRAMIDYLSET 296
                     ****************9886 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.1   2.3e-22   6.9e-19       3      60 .]       8      65 ..       6      65 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 2.3e-22
                HHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  3 qlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                +l+lfv+++++gsf++ A++ g++++avsr+++rLE+e+g++L++Rt+r+lrL +aGe
  CTQ26359.1  8 DLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRLSDAGE 65
                799******************************************************7 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   6.4e-06     0.019      23      47 ..      20      44 ..       9      45 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.4e-06
                EHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsrilkrLva 47
                + +++ar  g+++savsr + rL++
  CTQ26359.1 20 SFSAVARQNGITPSAVSRSVSRLER 44
                7899*******************96 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.2e-05     0.036      25      46 ..      17      37 ..      10      42 .. 0.84
   2 ?   -1.2   0.2      0.47   1.4e+03      20      34 ..      77      92 ..      76      93 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
  HTH_Tnp_ISL3 25 lesrsvkavArqlgvSwtTVwr 46
                   ++ s++avArq g++++ V r
    CTQ26359.1 17 DQG-SFSAVARQNGITPSAVSR 37
                  456.****************98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.47
  HTH_Tnp_ISL3 20 ilellles.rsvkavA 34
                  +++++ +s  s+++vA
    CTQ26359.1 77 AARQAMDSaGSRQTVA 92
                  5677777778888888 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.5e-05      0.11      10      38 ..      16      44 ..      13      53 .. 0.90
   2 ?   -2.7   0.1       2.2   6.6e+03      10      24 ..     222     238 ..     219     240 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.5e-05
      HTH_28 10 aaGhsvreaArelgisrrtvyrWikryee 38
                 +++s +++Ar+ gi+++ v+r ++r+e 
  CTQ26359.1 16 VDQGSFSAVARQNGITPSAVSRSVSRLER 44
                578899****************9999986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.2
      HTH_28  10 aaGh..svreaArelgi 24 
                 a++   + +++ ++lgi
  CTQ26359.1 222 ANHTavRLDAVRQHLGI 238
                 44434456667777777 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.2e-05      0.19      21      44 ..      22      45 ..      20      45 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.2e-05
      HTH_24 21 reLAerlglSpstvnrrlkrLeee 44
                + +A++ g++ps+v+r + rLe+e
  CTQ26359.1 22 SAVARQNGITPSAVSRSVSRLERE 45
                6788999***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2264.10
//
Query:       CTQ26360.1  [L=209]
Description: Metal-dependent hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00023   21.2   0.0    0.00038   20.5   0.0    1.4  1  tRNA_SAD      Threonyl and Alanyl tRNA synthetase second addi
    0.00037   19.1   0.0    0.00047   18.8   0.0    1.1  1  tRNA-synt_2c  tRNA synthetases class II (A)
     0.0053   17.0   0.2      0.011   16.0   0.1    1.6  1  T2SSN         Type II secretion system (T2SS), protein N


Domain annotation for each model (and alignments):
>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   6.4e-08   0.00038       5      32 ..     167     194 ..     163     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 6.4e-08
                 EETT.EEEEESS---SBGGGC-SEEEEC CS
    tRNA_SAD   5 siGdisvelCgGtHvpnTgeIgafkils 32 
                  +G+    +CgGtHv +  e+g+++i  
  CTQ26360.1 167 GFGELPAYPCGGTHVARLAELGDIVISQ 194
                 567777899****************974 PP

>> tRNA-synt_2c  tRNA synthetases class II (A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.9e-08   0.00047     485     532 ..      29      72 ..       8      88 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.9e-08
                   TEEEESEEXXXXSSSSCSXXXEEEEESSEEEEESEEEEETTEEEEEXS CS
  tRNA-synt_2c 485 vgvvLdrTpfYaesGGqigDeGliekegaefrvkdvqkakgvvlhkgk 532
                    ++ LdrT f +++GGq +D+G i ++     v++v ++++ vlh+ +
    CTQ26360.1  29 YAIELDRTLFHPQGGGQPADRGWIAGQV----VETVAVRGERVLHILS 72 
                   5577********************9987....6777777777777765 PP

>> T2SSN  Type II secretion system (T2SS), protein N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.9e-06     0.011     120     199 ..      59     142 ..       9     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.9e-06
       T2SSN 120 tlnwrnaev.sslsgslplgdlraelsceggqltltlsdqsgpLsleg.qgslnaagt..yrvagtlkptaeappaLaqaLsll 199
                 t+++r+ +v + ls+ lplg ++ ++ +   ql + l++ ++ L+l g q+ +++ +   ++ +g+++ t++ ++aL +a +ll
  CTQ26360.1  59 TVAVRGERVlHILSQPLPLGEVEMKIDASARQLHARLHSVGHLLGLAGeQLGWQPVKAhhWPGEGRITFTSRNSAALPDASALL 142
                 678899999999**************************9998888888456677655533888889***********9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1610.26
//
Query:       CTQ26361.1  [L=237]
Description: DNA-binding response regulator in two-component regulatory system with citA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-19   70.7   0.1    1.8e-19   69.9   0.1    1.4  1  Response_reg   Response regulator receiver domain
    4.1e-06   27.0   0.0    4.1e-06   27.0   0.0    2.2  2  CitT           Transcriptional regulator
  ------ inclusion threshold ------
      0.037   13.8   0.1       0.15   11.9   0.0    2.0  2  HTH_IclR       IclR helix-turn-helix domain
      0.097   13.4   0.2        1.9    9.3   0.0    2.4  2  PSK_trans_fac  Rv0623-like transcription factor
        0.1   12.6   0.0         14    5.8   0.0    2.6  2  HTH_29         Winged helix-turn helix


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.1   5.1e-23   1.8e-19       2     111 ..      10     120 ..       9     121 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 5.1e-23
                   EEESSSHHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   2 livdDdplvrellrqllee.egyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   liv+D+p+++e+l + +++  ++ +++ a++ ++a ++l+  +++lillD  +p+ +G++l+++   ++++ ++i++ta + +e++ eal++g++d+
    CTQ26361.1  10 LIVEDEPMLAEILVDNIKQfPQFDVIGIADKLESARKQLRLYQPQLILLDNFLPDGKGIDLIRHAVSTHYKGRIIFITADNHMETISEALRLGVFDY 106
                   8*****************659999************************************************************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l Kp++ ++L + l
    CTQ26361.1 107 LIKPVHYQRLQHTL 120
                   *********98876 PP

>> CitT  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.9       1.9   6.8e+03      25      28 ..      66      69 ..      65      69 .. 0.92
   2 !   27.0   0.0   1.1e-09   4.1e-06       1      29 [.     136     165 ..     136     165 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.9
        CitT 25 KGID 28
                KGID
  CTQ26361.1 66 KGID 69
                9**9 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 1.1e-09
        CitT   1 vdQrdVDrLFqraatgqpas.grLPKGIDk 29 
                 ++Q +VD+LF+++a++q+++ ++   GID+
  CTQ26361.1 136 ASQLHVDALFNIQAREQTEPaSAPLRGIDE 165
                 58******************99999****7 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.55     2e+03       9      28 ..     120     139 ..     115     142 .. 0.78
   2 ?   11.9   0.0   4.2e-05      0.15       7      40 ..     170     203 ..     169     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.55
                 HCT-CTTBSS-BHHHHHHHH CS
    HTH_IclR   9 LdalaeapqeltlselArrt 28 
                 L+ +a+ +  l+ se A ++
  CTQ26361.1 120 LERFARYRSSLRSSEQASQL 139
                 78899999999888866666 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.2e-05
                 HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR   7 aiLdalaeapqeltlselArrtglpkStvhRlLq 40 
                 ++L+++a  +   t   lAr +g +k+t++R+L 
  CTQ26361.1 170 RVLQLFADPTVVHTADSLARILGSSKTTARRYLE 203
                 58899999888889999***************96 PP

>> PSK_trans_fac  Rv0623-like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.14     5e+02      47      63 ..     118     133 ..      88     168 .. 0.55
   2 ?    9.3   0.0   0.00052       1.9       7      28 ..     177     198 ..     175     201 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.14
                    -HHHHHHHHHHHHHTS- CS
  PSK_trans_fac  47 pllerllallrraaaka 63 
                    ++ler+++ + + +  +
     CTQ26361.1 118 HTLERFARYRSSLRS-S 133
                    333333333333333.1 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00052
                    XXXXXXXXXXXXXXXXXXXXXX CS
  PSK_trans_fac   7 dpeverlareLarltgeskteA 28 
                    dp+v+  a++Lar+ g skt+A
     CTQ26361.1 177 DPTVVHTADSLARILGSSKTTA 198
                    9*******************98 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.014        52      23      37 ..     162     176 ..     147     177 .. 0.92
   2 ?    5.8   0.0    0.0038        14      15      34 ..     184     203 ..     181     207 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.014
      HTH_29  23 glsrrtvyrwlkrfe 37 
                 g++++t++r+l +f 
  CTQ26361.1 162 GIDESTFQRVLQLFA 176
                 89**********995 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0038
      HTH_29  15 vsqiAkllglsrrtvyrwlk 34 
                    +A++lg s++t +r+l+
  CTQ26361.1 184 ADSLARILGSSKTTARRYLE 203
                 5679**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1843.17
//
Query:       CTQ26362.1  [L=571]
Description: sensory histidine kinase in two-component regulatory system with citB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-21   76.6   0.3    6.2e-21   75.0   0.2    1.8  2  sCache_3_2       Single cache domain 3
    4.9e-15   56.0   0.0    9.1e-15   55.1   0.0    1.4  1  HATPase_c        Histidine kinase-, DNA gyrase B-, and HSP90-
    3.4e-12   46.1   0.1    2.4e-11   43.4   0.0    2.4  3  HATPase_c_5      GHKL domain
      4e-05   23.5   6.1    0.00067   19.5   0.1    3.5  3  dCache_1         Cache domain
     0.0001   21.9   2.9    0.00027   20.6   2.9    1.6  1  SPOB_a           Sensor_kinase_SpoOB-type, alpha-helical doma
    0.00023   20.9   0.0    0.00052   19.7   0.0    1.5  1  dCache_3         Double sensory domain of two-component senso
     0.0023   17.9   0.0     0.0047   16.9   0.0    1.4  1  HATPase_c_2      Histidine kinase-like ATPase domain
     0.0043   17.3   0.0       0.53   10.6   0.0    2.8  2  PAS_4            PAS fold
     0.0074   16.3   0.1      0.037   14.0   0.0    2.2  2  PAS              PAS fold
     0.0078   16.2   0.0      0.022   14.8   0.0    1.7  1  PAS_8            PAS domain
  ------ inclusion threshold ------
      0.014   15.7   0.4      0.065   13.5   0.0    2.4  3  PAS_9            PAS domain
      0.019   15.1   0.1      0.056   13.6   0.0    1.9  1  PAS_7            PAS fold
      0.024   13.9   0.0      0.072   12.4   0.0    1.8  1  Cache_3-Cache_2  Cache 3/Cache 2 fusion domain
      0.048   14.1   0.0       0.13   12.7   0.0    1.7  1  sCache_3_3       Single cache domain 3


Domain annotation for each model (and alignments):
>> sCache_3_2  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.2   4.8e-24   6.2e-21       4     133 ..      73     201 ..      71     207 .. 0.94
   2 ?   -3.7   0.0       9.5   1.2e+04      58      78 ..     273     296 ..     264     302 .. 0.51

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 4.8e-24
  sCache_3_2   4 rdlaealeeralalatsvagsrivrvaltdrapesglqalvddvrritgvdyvvitDeegrvlahpdpaevgrklsgpataaalkagrayvgtvtgtlg 102
                 ++l+ + ++ral  a ++++ ++  +a+++ ++ ++++al+d +r+ ++++y+++ D+ g++l h +p+e+g++++g++  +al   ++yv++  g lg
  CTQ26362.1  73 ERLHYQVGQRALIQAMQISAMPELVEAVQK-RDLARIKALIDPMRSFSDATYITVGDASGQRLYHVNPDEIGKSMEGGDSDEALINAKSYVSVRKGSLG 170
                 567778899999999999999999999999.999***************************************************************** PP

  sCache_3_2 103 pslrvklPvfdadgrviGivsvGvkqdeisa 133
                  slr+k P+ da g+viGivsvG++ ++++ 
  CTQ26362.1 171 SSLRGKSPIQDATGKVIGIVSVGYTIEQLEN 201
                 ************************9988875 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 9.5
  sCache_3_2  58 itDeegrvlah...pdpaevgrkl 78 
                 ++++  r+l +   p+p+ +g+++
  CTQ26362.1 273 AINQTARRLLNlsqPEPTLIGKRI 296
                 344444444444334455555554 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   7.1e-18   9.1e-15       8     111 ..     462     565 ..     458     566 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 7.1e-18
                 HHHHHHHHHHHHH...HS.TTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEE CS
   HATPase_c   8 qiisnlvdNavkf...at.kageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGt 102
                  i+ nl+dNa ++   ++  +++ie  i+++ +++ i++ D G+Gi+++ ++++fe+ ++    ++ ++ +G+Gl +v+++ve+ gG+i ve++   Gt
  CTQ26362.1 462 SIVGNLLDNAYNAslrQPqGSKQIECLINSDGQEVIIEIADQGCGIDEALRDRIFERGVT----SSASKDHGIGLWLVRSYVEQAGGSIVVENNIPFGT 556
                 5899********966422244456666664458***********************7777....466789*********************9999**** PP

                 EEEEEEESS CS
   HATPase_c 103 tftftlple 111
                  ft+++pl+
  CTQ26362.1 557 IFTLYIPLT 565
                 *******97 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.6   2.1e+03      63      92 ..     181     210 ..     157     218 .. 0.77
   2 ?   -3.0   0.0       5.4   6.9e+03      17      37 ..     395     416 ..     391     427 .. 0.74
   3 !   43.4   0.0   1.9e-14   2.4e-11       4      90 ..     458     551 ..     455     564 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.6
  HATPase_c_5  63 kkeehGiGlksireivkkykgnlsieaedg 92 
                  +   + iG+ s+ +++++ ++ ls+++++ 
   CTQ26362.1 181 DATGKVIGIVSVGYTIEQLENWLSLQISSL 210
                  55556699*********9999998887765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.4
  HATPase_c_5  17 Aieacskiee.ekrfIrltvre 37 
                  A+e  ++++e ++++I++ +r+
   CTQ26362.1 395 ALELIQQQSEsHQKVIDFIARN 416
                  7788888887788888887765 PP

  == domain 3  score: 43.4 bits;  conditional E-value: 1.9e-14
  HATPase_c_5   4 ldlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg...ek.kkle...sskskkeehGiGlksireivkkykgnlsieae 90 
                  ++ ++i+gnlLdNA++a+ ++++ ++ I++ ++++ + +ii+i  +  g      ++++    ++s +++hGiGl  +r+ v++ +g++ +e++
   CTQ26362.1 458 NEWISIVGNLLDNAYNASLRQPQGSKQIECLINSDGQEVIIEIADQGCGideALrDRIFergVTSSASKDHGIGLWLVRSYVEQAGGSIVVENN 551
                  67789****************************************977744322433334555578899*******************998876 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   5.3e-07   0.00067      31     168 ..      85     204 ..      21     210 .. 0.76
   2 ?    2.3   0.0     0.096   1.2e+02     189     245 ..     285     343 ..     241     345 .. 0.71
   3 ?    2.7   0.7     0.071        91      10      53 ..     357     402 ..     353     431 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.3e-07
    dCache_1  31 nlaetlasnpslqdlleepnraneasreslqallksilksnpdisgvylvdadGqvias.sdpssppnlegtddpadrdwykealaggggkpvisdpyv 128
                  +a++++ +p+l++++++ +   +a +++l + ++s+    +d  ++++ da+Gq ++  ++++  ++ eg+d        +eal +   k+++s   v
  CTQ26362.1  85 IQAMQISAMPELVEAVQKRD---LARIKALIDPMRSF----SDATYITVGDASGQRLYHvNPDEIGKSMEGGDS-------DEALINA--KSYVS---V 164
                 589*************9876...46666666666655....56679*********9875144444333332333.......3555555..78555...3 PP

    dCache_1 129 dqtgg.kpvitiavpiyddsgkfiGvlaadldldnlqdlls 168
                  ++ +  + +   +pi d++gk+iG++ + +++++l + ls
  CTQ26362.1 165 RKG-SlGSSLRGKSPIQDATGKVIGIVSVGYTIEQLENWLS 204
                 334.434899999***********************99655 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.096
    dCache_1 189 ahpdkdllgknlrdelkaqealekalakiesgvssvklngeeylva.yapip...tglgWy 245
                 + p+++l+gk+++++ ++ e ++ + +++  ++  v++n+ +  +a  +++    +++gW 
  CTQ26362.1 285 SQPEPTLIGKRISSVISQ-EVFFYDAPQTNKKDEIVTFNQIKV-IAsRMAVIlnnEPQGWV 343
                 456777788888777654.777777777778888888888777.65333333567667775 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.071
    dCache_1  10 qllglaeqlanniedvldslenlaetlasnpslqdlleepnra......n 53 
                  +l++++q+a+n+ +v ++ +nl  t+a       +l+ +n+a      +
  CTQ26362.1 357 LQLSQVQQYADNLRAVQHEHRNLISTIAGL----LFLKRYNQAleliqqQ 402
                 68999**********************984....4566666544333322 PP

>> SPOB_a  Sensor_kinase_SpoOB-type, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   2.9   2.1e-07   0.00027       5      54 ..     358     407 ..     355     413 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.1e-07
      SPOB_a   5 eikelkeliklLrsqRHDflNhLQvIsGylqLgkydkaeeyieevvkelk 54 
                 ++++++++ + Lr+  H+  N +  I G+l L++y++a e+i++ ++  +
  CTQ26362.1 358 QLSQVQQYADNLRAVQHEHRNLISTIAGLLFLKRYNQALELIQQQSESHQ 407
                 678999**************************************998766 PP

>> dCache_3  Double sensory domain of two-component sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.1e-07   0.00052      24     144 ..      81     198 ..      70     206 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.1e-07
    dCache_3  24 dqllallelvasspgvaeaisegdreqlerlldsiwndlgleqivlldadgtvilrlhepskfgdslslfrllirsvlqgeealagievgdagctfrvv 122
                 +++l  + +++++p++ ea +++d ++++ l+d+ +   ++ +i++ da+g+ +   ++p+  g s++  +   +++l + +++   + g+ g ++r+ 
  CTQ26362.1  81 QRALIQAMQISAMPELVEAVQKRDLARIKALIDPMRSFSDATYITVGDASGQRLYH-VNPDEIGKSMEGGDS--DEALINAKSYVSVRKGSLGSSLRGK 176
                 77888899****************************9999*************999.**************9..9999999999999999999****** PP

    dCache_3 123 aPvl.aegeqvvGavvfgvsLnn 144
                  P+  a g+ v+G+v++g+++++
  CTQ26362.1 177 SPIQdATGK-VIGIVSVGYTIEQ 198
                 ****88888.**********993 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.7e-06    0.0047      40     110 ..     468     540 ..     462     555 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.7e-06
  HATPase_c_2  40 ctNavehayleap.egpvevrlesdeealtvevaDsGpgfdpe...tlpdpteeepkeslkegGrGlalikglvD 110
                  + Na+++  ++ + ++++e+ + sd++++ +e+aD+G g d +    + +++++  +   k +G+Gl l++++v+
   CTQ26362.1 468 LDNAYNASLRQPQgSKQIECLINSDGQEVIIEIADQGCGIDEAlrdRIFERGVT--SSASKDHGIGLWLVRSYVE 540
                  569999998888888999999******************666512223334444..6999***********9997 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.054        69      82     108 ..     173     199 ..     121     201 .. 0.84
   2 !   10.6   0.0   0.00041      0.53       1      47 [.     255     303 ..     255     315 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.054
       PAS_4  82 elrllPlrdesGevigvlvisrDiTer 108
                 +  ++P+ d+ G+vig++ +++ i ++
  CTQ26362.1 173 LRGKSPIQDATGKVIGIVSVGYTIEQL 199
                 55579*************999998765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00041
       PAS_4   1 ldslpdalavldpdgrvlyaNaaaae.lf.gappeellGktlaellpee 47 
                 ++s+ ++l+++d+d++++++N++a++ l    p  +l+Gk+  ++ ++e
  CTQ26362.1 255 FESVFEGLIAIDSDYKITAINQTARRlLNlSQPEPTLIGKRISSVISQE 303
                 57777899******************53313444568888888776665 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.9e-05     0.037       6      53 ..     254     303 ..     251     316 .. 0.86
   2 ?   -3.3   0.0         7   8.9e+03      58      80 ..     391     413 ..     378     420 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.9e-05
                 HHHHSSSEEEEEETTSBEEEECHHHHHHHSSTH..HHCTTSBGGGGBSTT CS
         PAS   6 ileslpdpifvvDedgrilyvNaaaeellGlsr..eevlgkslldlihee 53 
                 ++es  ++ +++D d +i+ +N++a++ll+ls+    ++gk ++ +i+ e
  CTQ26362.1 254 LFESVFEGLIAIDSDYKITAINQTARRLLNLSQpePTLIGKRISSVISQE 303
                 567777899************************77789999999888765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7
                 HHHHHHHHHHHTT-ECCCCEEEE CS
         PAS  58 laelleqlleqgeesrageisfk 80 
                 ++ + ++l++q++es+++ i+f 
  CTQ26362.1 391 RYNQALELIQQQSESHQKVIDFI 413
                 67777888888888888777766 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.7e-05     0.022       6      38 ..     254     289 ..     248     315 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.7e-05
       PAS_8   6 lfesspdgiavvdlgdrivdvNqaalellGys...a 38 
                 lfes+ +g++ +d + +i+ +Nq+a +ll +s   +
  CTQ26362.1 254 LFESVFEGLIAIDSDYKITAINQTARRLLNLSqpeP 289
                 799999*******5556************9984322 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         8     1e+04      83      97 ..     177     191 ..     176     193 .. 0.83
   2 ?   13.5   0.0   5.1e-05     0.065       5      48 ..     263     315 ..     259     356 .. 0.72
   3 ?   -3.5   0.0       9.7   1.2e+04      34      57 ..     483     504 ..     478     518 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 8
       PAS_9  83 spvkdddgelvgiiv 97 
                 sp++d+ g+++gi++
  CTQ26362.1 177 SPIQDATGKVIGIVS 191
                 799999***999765 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.1e-05
       PAS_9   5 lidnpdgrilyaNeaalrllGys..peevlgksitdlf.......vtdpeane 48 
                 + +++d +i+ +N++a+rll  s  +  ++gk+i+ ++       + ++ +++
  CTQ26362.1 263 IAIDSDYKITAINQTARRLLNLSqpEPTLIGKRISSVIsqevffyDAPQTNKK 315
                 43569****************5534677*********9888777533333333 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 9.7
       PAS_9  34 ksitdlfvtdpeanerlraaleqg 57 
                 k+i++l+  +++++e + ++ +qg
  CTQ26362.1 483 KQIECLI--NSDGQEVIIEIADQG 504
                 5667777..666666666665555 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.4e-05     0.056       2      55 ..     256     310 ..     255     350 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-05
       PAS_7   2 enmsqGisvfDadlrLvawNrrylelldlpe.elvqvgvpleellrynaergefg 55 
                 e++ +G++ +D+d +++a+N+  ++ll+l++ e   +g+++++++   +   +  
  CTQ26362.1 256 ESVFEGLIAIDSDYKITAINQTARRLLNLSQpEPTLIGKRISSVISQEVFFYDAP 310
                 78889***********************975245568888888887765555555 PP

>> Cache_3-Cache_2  Cache 3/Cache 2 fusion domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.6e-05     0.072     158     182 ..     177     200 ..     175     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.6e-05
  Cache_3-Cache_2 158 ePikdadgkViGilyVgvdqsealk 182
                      +Pi da+gkViGi+ Vg+ + e l+
       CTQ26362.1 177 SPIQDATGKVIGIVSVGYTI-EQLE 200
                      6*****************99.4444 PP

>> sCache_3_3  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0    0.0001      0.13      78     102 ..     177     201 ..     140     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0001
  sCache_3_3  78 ePlkdadgkviGmlfvGlpeeevqa 102
                  P+ da+gkviG++ vG+ +e++++
  CTQ26362.1 177 SPIQDATGKVIGIVSVGYTIEQLEN 201
                 6*******************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4394.23
//
Query:       CTQ26363.1  [L=28]
Description: hypothetical protein CH1034_110147 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-08   33.5   1.8    2.4e-08   33.4   1.8    1.0  1  OAD_beta  Na+-transporting oxaloacetate decarboxylase beta su


Domain annotation for each model (and alignments):
>> OAD_beta  Na+-transporting oxaloacetate decarboxylase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   1.8   1.3e-12   2.4e-08     325     348 ..       1      24 [.       1      25 [. 0.95

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.3e-12
    OAD_beta 325 mhamgpnvaGvigsavaagvllal 348
                 mhamgpnvaGvigsa+aagv+l++
  CTQ26363.1   1 MHAMGPNVAGVIGSAIAAGVMLKY 24 
                 9********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (28 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      134  (0.00747392); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.25s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 222.28
//
Query:       CTQ26364.1  [L=446]
Description: Citrate-sodium symporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.9e-146  488.0  37.2   2.1e-146  487.8  37.2    1.0  1  2HCT             2-hydroxycarboxylate transporter family


Domain annotation for each model (and alignments):
>> 2HCT  2-hydroxycarboxylate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  487.8  37.2  1.2e-150  2.1e-146       1     416 []      23     440 ..      23     440 .. 0.99

  Alignments for each domain:
  == domain 1  score: 487.8 bits;  conditional E-value: 1.2e-150
        2HCT   1 ilglplplfllllavlllalltgklpkdligalavllvlGillgeiGkriPilksylGGgailallvpsllvylgllpeevvkavttfmkesgfldlyi 99 
                 i+g+plpl++++l+ lll++++++lp+d++g++a+++++G+++geiGkr+Pi+++y+GG+ ++++lv++++vy+g+++++ ++a++++m++s+fl+l+i
  CTQ26364.1  23 IFGMPLPLYAFALITLLLSHFYNALPTDIVGGFAIMFIIGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAISNVMDKSNFLNLFI 121
                 799************************************************************************************************ PP

        2HCT 100 aaLivgSiLgmdrklLikafvryipliliglvlalllgvlvGlllGlsakeallyivlPimaGGvgaGavpLseiyssvlgkdaeellsqlipavllgn 198
                 a+Li+g+iL+++r+lL+k++++yip+il+g+v a ++g+++Gl++G+ + ++++++vlPim+GG+gaGavpLseiy+sv+g + ee++s++i++++++n
  CTQ26364.1 122 AVLITGAILSVNRRLLLKSLLGYIPTILMGIVGASIFGIAIGLVFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTIAN 220
                 *************************************************************************************************** PP

        2HCT 199 ivaivvagllkklgkkkpsltGnGkllkkkeeeekakekkekekkidvkklgaglllalslyllgvllekli.....gvkipalvlmiilvvivkllnl 292
                 i+aiv+a++l+ +gkk++ l+G+G+l++k++ +    e++ek+ +i+++++++gl+l+++++ll+++++k i     gv i+ +++m+++v+++++++l
  CTQ26364.1 221 IFAIVFAAVLDIIGKKHTWLSGEGELVRKASFKV---EEDEKAGQITHRETAVGLVLSTTCFLLAYVVAKKIlpsigGVAIHYFAWMVLIVAALNASGL 316
                 *****************************98876...889999*************************99999*996588******************* PP

        2HCT 293 ipeeleegakqlykfisknltlallvgiGvaltdlkeliaaltvqyviiilvtVvgavlgaalvgkllgfypieaaitagLcmanmGGtGdvavLsAan 391
                 ++ e++ gak+l++f+sk+l+++l+vg+Gv++tdl+e+i+a+t+++v+i++++V+gavlgaa+ g+l+gf+pie+aitagLcman+GG+Gd++vLsA+n
  CTQ26364.1 317 CSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIINAITFANVVIAAIIVIGAVLGAAIGGWLMGFFPIESAITAGLCMANRGGSGDLEVLSACN 415
                 *************************************************************************************************** PP

        2HCT 392 rmeLmpFAqistRlGGAlvvilasl 416
                 rm+L+++Aqis+RlGG++v+++as+
  CTQ26364.1 416 RMNLISYAQISSRLGGGIVLVIASI 440
                 **********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3375.51
//
Query:       CTQ26365.1  [L=342]
Description: citrate lyase synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-82  276.0   0.0    1.6e-82  275.6   0.0    1.1  1  Citrate_ly_lig   Citrate lyase ligase C-terminal domain
    4.4e-05   23.4   0.0    9.3e-05   22.4   0.0    1.5  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    6.3e-05   23.2   0.0    0.00025   21.3   0.0    1.9  2  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0059   17.0   0.0      0.019   15.4   0.0    1.8  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.038   13.2   0.0        4.6    6.4   0.0    2.1  2  HIGH_NTase1      HIGH Nucleotidyl Transferase


Domain annotation for each model (and alignments):
>> Citrate_ly_lig  Citrate lyase ligase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.6   0.0   4.4e-86   1.6e-82       1     182 []     146     331 ..     146     331 .. 0.99

  Alignments for each domain:
  == domain 1  score: 275.6 bits;  conditional E-value: 4.4e-86
  Citrate_ly_lig   1 iaaivmnanPftlGhryLvekaakendvvhlfvvkedkslfsyeerlklvkkGikdlknvtlhegsdYlisratfPsYflkeqeevaesqaelDl 95 
                     i+aivmnanPftlGhr+Lve+aa+++d++hlfvvked+s+fsy++r+kl+++Gi+ +++vtlh gs+YlisratfP+Yflkeq +v+++++++Dl
      CTQ26365.1 146 IGAIVMNANPFTLGHRWLVEQAASQCDWLHLFVVKEDASCFSYHDRFKLIEQGITGIDKVTLHPGSAYLISRATFPGYFLKEQGVVDDCHSQIDL 240
                     79********************************************************************************************* PP

  Citrate_ly_lig  96 klfkeriakalgitkryvGeeplsevtaaYnqalkevlekae....ievveierkekeeelisaskvrkllkeknleklaelvPkttleyl 182
                     +lf+er+a+al+it+r+vG+epl+++t++Ynq++k+ le+++    ievve++r+ek++ ++sas+vr+l++++n++++a+lvP +tl++l
      CTQ26365.1 241 QLFRERLAPALQITHRFVGTEPLCPLTRNYNQRMKSLLEAPGdappIEVVELARIEKNGGPVSASRVRELYRQRNWQAVAALVPPGTLSFL 331
                     ***************************************9999999*******************************************97 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.6e-08   9.3e-05       7     108 ..      17     111 ..      11     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.6e-08
  Acetyltransf_10   7 eegietfkefispealrerieegealllvaeeggkivGvielrdgshisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpf 100
                      +e+i++f ++   ++l+ +  +   + ++ae ++++vG++++  +  +  +++dp+ +g G++ +Ll ++++ a + g + el +  +p   ++
       CTQ26365.1  17 REAIDRFLRQ---HQLSLE--ADCEMAIIAEYQQRLVGCGAIAGN-VLKCIAIDPSLQGEGLSLKLLTELLTLAYELGRS-ELFLFTKPCNAAL 103
                      5566666433...334333..34466899999********88666.9**************************9777777.9999999988888 PP

  Acetyltransf_10 101 YeklGFka 108
                      +   GF +
       CTQ26365.1 104 FSGAGFWP 111
                      88888865 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   6.8e-08   0.00025      18     111 ..      21     103 ..       4     109 .. 0.72
   2 ?   -1.5   0.0      0.77   2.8e+03      38      56 ..     139     167 ..     116     184 .. 0.62

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 6.8e-08
                     HHHHHHHHHHHHSTTC.EEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHH CS
  Acetyltransf_1  18 daseeefeesfsleae.gllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaair 110
                     d+++  +++ +slea+ +  + ae+ ++l+G+  +  +        ++  +a++p+ +g Gl  +Ll++l+  a e g  +++l + + n    +
      CTQ26365.1  21 DRFL--RQHQLSLEADcEMAIiAEYQQRLVGCGAIAGN--------VLKCIAIDPSLQGEGLSLKLLTELLTLAYELGRSELFLFTKPCN---AA 102
                     2222..3333444444344445***********66655........5699***************************99999**999989...44 PP

                     H CS
  Acetyltransf_1 111 l 111
                     l
      CTQ26365.1 103 L 103
                     4 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.77
                     EEETTEEEEEEEEEEEET..........T CS
  Acetyltransf_1  38 aeedgeliGfisllkipd..........e 56 
                     ++  g+ iG i ++ +p+           
      CTQ26365.1 139 YRQPGRKIGAIVMNANPFtlghrwlveqA 167
                     45558888999888888844444444333 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.4e-06     0.019       6      49 ..      39      83 ..      33     110 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.4e-06
                    EEEEETTEEEEEEEEEEESTCTEEEEE-GGGTTSSHHHHHHHH...T CS
  Acetyltransf_7  6 fVaeddgkivGfialslldaeitrlaVdpeyrgkGiGraLlea...a 49
                    ++ae +++ vG+ a++ +   ++++a+dp+ +g G+  +Ll+     
      CTQ26365.1 39 IIAEYQQRLVGCGAIAGN--VLKCIAIDPSLQGEGLSLKLLTElltL 83
                    5799999****9999988..6888*****************852331 PP

>> HIGH_NTase1  HIGH Nucleotidyl Transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0013       4.6       2      28 ..     145     171 ..     144     179 .. 0.86
   2 ?    4.8   0.0    0.0036        13     199     241 ..     297     338 ..     290     342 .] 0.80

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0013
  HIGH_NTase1   2 kvvGiIaEYNPfHnGHlyhlekakelt 28 
                  k+ +i++  NPf  GH++++e+a +++
   CTQ26365.1 145 KIGAIVMNANPFTLGHRWLVEQAASQC 171
                  56789*****************98875 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0036
  HIGH_NTase1 199 eeeeiaSAtaiRkalkeekkleelkklvPestleilkeelkkk 241
                  +++   SA+ +R++++++ + +++++lvP  tl++l + ++++
   CTQ26365.1 297 KNGGPVSASRVRELYRQR-NWQAVAALVPPGTLSFLMQLAESE 338
                  556678*********666.5699***********999876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2901.81
//
Query:       CTQ26366.1  [L=97]
Description: citrate lyase, acyl carrier (gamma) subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-29  100.6   1.7    4.8e-29  100.4   1.7    1.1  1  ACP       Malonate decarboxylase delta subunit (MdcD)


Domain annotation for each model (and alignments):
>> ACP  Malonate decarboxylase delta subunit (MdcD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   1.7   2.7e-33   4.8e-29       3      83 .]       6      86 ..       4      86 .. 0.97

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 2.7e-33
         ACP  3 talaGtleSsDleVlvepaeeggieielessvekqfgeqieavieetleelgvkaakveinDkGAldcviraRleqAlera 83
                 alaGtleSsD++V + pa++ gi++e++s v++qfg++ie+v++etl++lgvk+a+v ++DkGAl+cv+raR+++A+ ra
  CTQ26366.1  6 DALAGTLESSDVMVRIGPAAQPGIQLEIDSIVKQQFGAAIEQVVRETLAQLGVKQASVVVDDKGALECVLRARVQAAALRA 86
                589**************************************************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 788.99
//
Query:       CTQ26367.1  [L=314]
Description: citrate lyase, citryl-ACP lyase (beta) subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-77  258.6   1.6    3.1e-77  258.6   0.5    1.5  2  HpcH_HpaI       HpcH/HpaI aldolase/citrate lyase family
    2.3e-09   36.9   0.2    3.5e-06   26.4   0.0    2.3  2  C-C_Bond_Lyase  C-C_Bond_Lyase of the TIM-Barrel fold


Domain annotation for each model (and alignments):
>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.6   0.5   3.5e-81   3.1e-77       1     221 []      30     248 ..      30     248 .. 0.99
   2 ?   -2.2   0.0       0.2   1.8e+03      42      60 ..     262     279 ..     255     310 .. 0.59

  Alignments for each domain:
  == domain 1  score: 258.6 bits;  conditional E-value: 3.5e-81
                 EEEEEEESTSHHHHHHHCTC--SEEEEESSTSSSHHHHHHHHHHHHHHHHHHHHCTTTSSEEEEE-SSTTHHHHHHHGG.HHHTTSSEEEESS--SHHH CS
   HpcH_HpaI   1 riglflpganaalaekaaiagaDsvliDlEdavalaeKdaARvlvsealkqldalaaaasevvVRvnsldselikqdle.vldlgaqvvlvPkvetaee 98 
                 r++lf+pganaa++++ +++gaD+v++DlEdav+l+eKd+AR lv++al+++ + +++  e+vVR+n+l+++++  dle v+++g++ v++Pk++++e+
  CTQ26367.1  30 RSMLFIPGANAAMLSTSFVYGADAVMFDLEDAVSLREKDTARLLVYQALQHPLY-QDI--ETVVRINPLNTPFGLADLEaVVRAGVDMVRLPKTDSKED 125
                 89****************************************************.999..*************************************** PP

                 HHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHH.TSTTEEEEEE-HHHHHHHTT-TTSTTSHHHHHHHHHHHHTTHCEEEEEEE.E-SSHH CS
   HpcH_HpaI  99 alevvsalrepekgirganketrllaqiEsaegvknaeeIa.avegldgvflGaeDlsadlgtkrspegtevldareriltaaraagiaaldtvasdid 196
                 + e+++ ++++e+++++++++t+l+a+iEsa+gv na eIa a+++l++++l+a D+++d+gt+r  +gte+++ar+++l+aar agiaa+d+v+sdi+
  CTQ26367.1 126 IHELEAHVERIERECGREVGSTKLMAAIESALGVVNAVEIArASPRLAAIALAAFDYVMDMGTSR-GDGTELFYARCAVLHAARVAGIAAYDVVWSDIN 223
                 ****************************************************************9.89******************************* PP

                 HHHHHHHTTHCEEEEEEHHHHHHHH CS
   HpcH_HpaI 197 daegflaegalfvalGfdgkllinp 221
                 ++egflae++l+++lGf+gk+l+np
  CTQ26367.1 224 NEEGFLAEANLAKNLGFNGKSLVNP 248
                 **********************998 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHCTTTSS CS
   HpcH_HpaI  42 Rvlvsealkqldalaaaas 60 
                 R++v +al+ ++a+++a  
  CTQ26367.1 262 RKEVDHALEVIAAAEEA-E 279
                 55555555555554443.2 PP

>> C-C_Bond_Lyase  C-C_Bond_Lyase of the TIM-Barrel fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00011      0.94      11     140 ..      33     155 ..      31     186 .. 0.64
   2 !   26.4   0.0   3.9e-10   3.5e-06     249     314 ..     224     293 ..     203     310 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00011
  C-C_Bond_Lyase  11 LYmPatrediaekilkqklegltslvlclEDavseeeveaAeenlkellkelaeaekekekeelpllFvRvRspeq...lkellerlgealellt 102
                     L++P+ +   a++++++ + g+ +++++lEDavs +e ++A   + ++l++   ++ e          vR+   ++   l++l + +    + ++
      CTQ26367.1  33 LFIPGAN---AAMLSTSFVYGADAVMFDLEDAVSLREKDTARLLVYQALQHPLYQDIE--------TVVRINPLNTpfgLADLEAVV---RAGVD 113
                     6677776...566777788999********************9999999886553222........223433333300044444444...34444 PP

  C-C_Bond_Lyase 103 GfvlPkftses.leeylealkkaneklgkk...lllmPilEt 140
                      + lPk++s++ ++e  ++++++++++g++     lm  +E+
      CTQ26367.1 114 MVRLPKTDSKEdIHELEAHVERIERECGREvgsTKLMAAIES 155
                     455777765431445555566666666655444566666666 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 3.9e-10
  C-C_Bond_Lyase 249 dldglirEvalDkanGlvGKtvIhPsqialvqallvVskeeyedAldilesakg......gvfkseyankmn 314
                     + +g++ E  l k  G+ GK+ + P+qi+l +++++ +++e ++Al+++++a++      gv++ +  +km+
      CTQ26367.1 224 NEEGFLAEANLAKNLGFNGKSLVNPRQIELLHQVYAPTRKEVDHALEVIAAAEEaetrglGVVSLN--GKMI 293
                     457999******************************************998553234545555555..7777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2310.80
//
Query:       CTQ26368.1  [L=502]
Description: citrate lyase, citrate-ACP transferase (alpha) subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.1e-248  822.9   1.2   9.3e-248  822.7   1.2    1.0  1  CitF             Citrate lyase, alpha subunit (CitF)
     0.0032   17.4   0.1     0.0062   16.5   0.1    1.4  1  AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal 


Domain annotation for each model (and alignments):
>> CitF  Citrate lyase, alpha subunit (CitF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  822.7   1.2    1e-251  9.3e-248       2     466 .]      34     498 ..      33     498 .. 1.00

  Alignments for each domain:
  == domain 1  score: 822.7 bits;  conditional E-value: 1e-251
        CitF   2 rklvasleeaikksglkdGmtisfhhafreGdlvvnlvleviaelGiknltlasssltdvheplvehiknGvvtkiyssGlrgklaeeisrGlleepvk 100
                 rk+++sle ai++sgl++Gmtisfhhafr+Gd+vvn+v+ ++ae+G+++ltlasssl+d+h pl+ehiknGv+ +iy+sGlrgkl+eeis Gl+e+pv+
  CTQ26368.1  34 RKICDSLETAIRRSGLQNGMTISFHHAFRGGDKVVNMVVAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVIRQIYTSGLRGKLGEEISAGLMENPVQ 132
                 8************************************************************************************************** PP

        CitF 101 irshGGrvrliksGelkidvaflGvpsadefGnanGlkGkakcGslGyalvdaeyadkvvllteelveypntpisikqdqvdlvvkvdavGdpkkigag 199
                 i+shGGrv+li+sGel idvaflGvp++defGnanG++Gk+ cGslGya+vdae+a+ vvlltee v+ypn p+si+qdqvdl+v+vd+vGdp+ki+ag
  CTQ26368.1 133 IHSHGGRVQLIQSGELSIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYARVDAEHAKCVVLLTEEWVDYPNYPASIAQDQVDLIVQVDEVGDPQKITAG 231
                 *************************************************************************************************** PP

        CitF 200 atrltknpkelliakkaaevivnsgyfkeGfslqtGtGGaslavtrflrekmikenikasfalGGitaamvdlleeglveklldvqsfdsvaaeslarn 298
                 a rlt np+ellia++aa+v+++sgyfkeGfslqtGtGGaslavtrfl++km+++ i+asf+lGGit +mvdl+e+gl++ lld qsfd+ aa+sla+n
  CTQ26368.1 232 AIRLTSNPRELLIARQAAKVVEHSGYFKEGFSLQTGTGGASLAVTRFLEDKMRRNGITASFGLGGITGTMVDLHEKGLIKTLLDTQSFDGDAARSLAQN 330
                 *************************************************************************************************** PP

        CitF 299 knhleisaneyanpsskGasvdrldvvilsaleidtkfnvnvltGsdGvirGasGGhcdtaaaaklsiivaplvrGriptvveevttvitpGesvdvlv 397
                 +nh+eis+n+ya+p+skGas +rl+vv+lsaleid +fnvnv+tGs+Gv+rGasGGh dtaa a+l+ii aplvrGrip vve+v+t +tpG svdvlv
  CTQ26368.1 331 PNHVEISTNQYASPGSKGASCERLNVVMLSALEIDIDFNVNVMTGSNGVLRGASGGHSDTAAGADLTIITAPLVRGRIPCVVEKVLTRVTPGASVDVLV 429
                 *************************************************************************************************** PP

        CitF 398 tdvGiavnpkrpdlveklkeielpvvsieelkeraellvGkpeeleftdkvvalveyrdGslldvvkqv 466
                 td+Giavnp+r+dl+++l+++ +p+++ieel++raell+Gkp+++eftd+vva+v+yrdGs++dv++qv
  CTQ26368.1 430 TDHGIAVNPARQDLIDNLRSAGIPLMTIEELQQRAELLTGKPQPIEFTDRVVAVVRYRDGSVIDVIRQV 498
                 *******************************************************************98 PP

>> AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   6.9e-07    0.0062      36     124 ..     356     435 ..     326     442 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.9e-07
                      EEEEE-SEEETTS-EESSEC.TTCCTCGGTTHHHHHHHHHHSTT-EEEEE--SEETTTTEESEESS-STTSSECE-TTT-SEEEETTEEE CS
  AcetylCoA_hyd_C  36 vsinsalevdltGqvnsesl.ggrvvsGvGgqldFvrgaalskggksiialpStakkgeiSrIvpslkegahvtttrhdvdyvvTEyGia 124
                      v + sale+d+  +vn  +  +g    + Gg+ d ++ga l     +ii+ p ++  g+i ++v  +    + +t+ ++vd++vT++Gia
       CTQ26368.1 356 VVMLSALEIDIDFNVNVMTGsNGVLRGASGGHSDTAAGADL-----TIITAPLVR--GRIPCVVEKVL---TRVTPGASVDVLVTDHGIA 435
                      56889***********9999566666678************.....999999888..98999999888...8889**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3575.67
//
Query:       CTQ26369.1  [L=302]
Description: triphosphoribosyl-dephospho-CoA transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-84  281.4   0.8    1.1e-83  281.2   0.8    1.0  1  CitG      ATP:dephospho-CoA triphosphoribosyl transferase


Domain annotation for each model (and alignments):
>> CitG  ATP:dephospho-CoA triphosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.2   0.8     6e-88   1.1e-83       3     280 ..      25     291 ..      23     292 .. 0.97

  Alignments for each domain:
  == domain 1  score: 281.2 bits;  conditional E-value: 6e-88
                 XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXHHHHHHHHHTTHHHHHHHH................HH--HHHHHHHHHHHH------HHHHHHHHHHH CS
        CitG   3 lavlAlllEvsatpKPGlVdrrdsgahdDmdfetFlaSaealapyfeeaaaaGlea.....kalfeelrsiGelaekamlaatggvNThkGaifllgll 96 
                 ++++All Ev++tpKPGlVd r+ gah Dmd++ F aS++++ap++e++  +G ++     ++++  lr++G+++e+ ml+atggvNTh+Gaif++gll
  CTQ26369.1  25 AVERALLTEVRLTPKPGLVDIRNAGAHWDMDLASFEASTAVVAPWMEKFFIMGHDTaavspEQVLMMLRPVGMACENDMLEATGGVNTHRGAIFAFGLL 123
                 6899**************************************************99******************************************* PP

                 HTTTTS-.......SHHHHHHHHHHHHHT--HHHHHHHHHHHHH-----HHHHHH.TT--HHHHHHTS-TT-HHHHHHHHTSHHHHHHHH........H CS
        CitG  97 aaaagrraaeeeeasleelveeaaevlaeltvedavafrairlakveelkdelvekksltlgevlelsygvdgirgeaasgFpsvfeialpalrealas 195
                 +aaagr  +++e  + ++l++++a+++++++ +++                + ++ ++l+ ge+ +l+yg+ g+rgea+sgF +v++ a+p++++++++
  CTQ26369.1 124 SAAAGRLVSKGEPIEQHRLCDQVARFCRGMVMQEL----------------SSAGGERLSKGEAHFLRYGLSGARGEAESGFLTVRTQAMPVFTRMMEE 206
                 *****99999999999****************999................2233468***************************************99 PP

                 H-SSHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH..........H-SHHHHHHHHHHHHHHT---HHHHHHHHHHHHH CS
        CitG 196 gadlndalvqallallaelpDtnilrrgGaegaeevqeeArallaaggvaaeaglealeeldrelvernisPGgsADllaatlfl 280
                 ++d+n al+q+ll+l+a ++Dtn+++rgG +g+++vq+eA++ll +ggv a+ gleal+++d+el++r++sPGgsADlla+t+fl
  CTQ26369.1 207 TGDSNLALLQTLLHLMAWNDDTNLVSRGGLAGLNFVQQEAQRLLWQGGVLADGGLEALRQFDDELIARHLSPGGSADLLAVTWFL 291
                 9***********************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2403.98
//
Query:       CTQ26370.1  [L=273]
Description: dihydrodipicolinate reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-43  146.2   0.1    5.8e-43  145.8   0.1    1.2  1  DapB_C    Dihydrodipicolinate reductase, C-terminus
    1.8e-42  144.3   1.0    5.3e-42  142.8   0.2    2.0  3  DapB_N    Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> DapB_C  Dihydrodipicolinate reductase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.8   0.1   6.5e-47   5.8e-43       1     121 []     132     268 ..     132     268 .. 0.92

  Alignments for each domain:
  == domain 1  score: 145.8 bits;  conditional E-value: 6.5e-47
                 HHHHHHHHHHHHCCCSTTT-EEEEEEEESTT--SSS-HHHHHHHHHHH......................-S-ETTCCCEEEETTT--CCCCEEEECTT CS
      DapB_C   1 GvnlllklveeaakllkeaydveiiEkHhnkKaDaPSGTAlalaeaia............egke......arkkkeigihsvRgggvvgehevlfageg 81 
                 Gvn+llkl+e+aak++ +  d+eiiE+Hh++K+DaPSGTAla++eaia               +      +r +++ig+++vR+g++vgeh+ +fa  g
  CTQ26370.1 132 GVNVLLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAgalnkdlkdcavY--SregytgERVPGTIGFATVRAGDIVGEHTAMFADIG 228
                 9*****************899***************************8887666555551..05566689999************************* PP

                 EEEEEEEEEESCHHHHHHHHHHHHHH.HCTSSEESHHHHH CS
      DapB_C  82 evieikhealsreiFaeGallaaewlakkkkglysmedvL 121
                 e+iei+h+a+sr +Fa+Ga++ a wl++kk+gl++m+dvL
  CTQ26370.1 229 ERIEITHKASSRMTFANGAVRSALWLKGKKNGLFDMRDVL 268
                 ***************************************8 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   0.2   5.9e-46   5.3e-42       1     124 []       6     129 ..       6     129 .. 0.99
   2 ?   -0.8   0.0      0.18   1.6e+03      44      63 ..     168     188 ..     138     210 .. 0.57
   3 ?   -1.6   0.0      0.31   2.7e+03      12      35 ..     174     195 ..     168     240 .. 0.64

  Alignments for each domain:
  == domain 1  score: 142.8 bits;  conditional E-value: 5.9e-46
                 EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSSHHHHHHH-SEEEE-S-HHHHHHHHHHHHHTT-EEEE--S CS
      DapB_N   1 ikvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevlekadvliDFTtpeavlenlklalekgvklViGTT 99 
                 i+va++Ga GrmG+++++a+ + e++ l+aa++r++s+l+g+dagel+g gk gvav+++l++v++++dvliDFT+pe++l++l+++ e+g+ +ViGTT
  CTQ26370.1   6 IRVAIAGAGGRMGRQLIQAALQMEGVALGAALEREGSSLVGSDAGELAGAGKAGVAVQSSLAAVKDDFDVLIDFTRPEGTLNHLAFCREHGKGMVIGTT 104
                 79************************************************************************************************* PP

                 S--HHHHHHHHHHTTTSEEEE-S-- CS
      DapB_N 100 GlseeelaeleelakkigvviapNf 124
                 G++++ ++ ++++a++i++v+a+Nf
  CTQ26370.1 105 GFDDAGKQAIRDAAQDIAIVFAANF 129
                 ************************8 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.18
                 HHHHSSSS.--S-BEBSSHHH CS
      DapB_N  44 agellglg.klgvavtddlee 63 
                  g++l +g  +  a+++dl++
  CTQ26370.1 168 SGTALAMGeAIAGALNKDLKD 188
                 444444443444444444444 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHSTTEEEEEEEETT CS
      DapB_N  12 mGkevvkaveeaedlelvaavdrk 35 
                 mG++++ a+++  dl+  a+++r+
  CTQ26370.1 174 MGEAIAGALNK--DLKDCAVYSRE 195
                 77777777766..44444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2362.99
//
Query:       CTQ26371.1  [L=382]
Description: carbamoyl-phosphate synthase, small chain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-53  177.9   0.1    1.1e-52  177.2   0.1    1.3  1  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP
    5.5e-50  169.8   0.0    9.6e-50  169.0   0.0    1.4  1  GATase           Glutamine amidotransferase class-I
    1.2e-07   31.7   0.0      1e-05   25.4   0.0    2.3  1  Peptidase_C26    Peptidase C26
     0.0081   16.0   0.0      0.018   14.9   0.0    1.5  1  DJ-1_PfpI        DJ-1/PfpI family
  ------ inclusion threshold ------
       0.18   12.2   0.0       0.41   11.0   0.0    1.6  1  Ish1             Putative stress-responsive nuclear envelope 


Domain annotation for each model (and alignments):
>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.2   0.1   3.1e-56   1.1e-52       2     128 .]       5     132 ..       4     132 .. 0.98

  Alignments for each domain:
  == domain 1  score: 177.2 bits;  conditional E-value: 3.1e-56
  CPSase_sm_chain   2 avLvLedGtvfeGksfg.akeavGEvvfnTgmtGYqeiltDpsYagqilvltypliGnyGvneedvesekikvaglvvrelseepsnwraeesL 94 
                      a+LvLedGt f+G+++g +++avGEvvfnT+mtGYqeiltDpsY++qi++ltyp+iGn+G+n++d es++++++glv+r+l   +sn+r++e+L
       CTQ26371.1   5 ALLVLEDGTQFHGRAIGaTGTAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNAADEESSQVHAQGLVIRNLPLIASNFRSTEDL 98 
                      78***************77999************************************************************************ PP

  CPSase_sm_chain  95 sewlkeekipgisgvDTRaLtkklrekgamkgvi 128
                      s++lk+++i++i+++DTR+Lt+ lrekga++g+i
       CTQ26371.1  99 SSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCI 132
                      ********************************98 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.0   2.7e-53   9.6e-50       3     189 ..     197     372 ..     195     373 .. 0.96

  Alignments for each domain:
  == domain 1  score: 169.0 bits;  conditional E-value: 2.7e-53
                 EESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEE CS
      GATase   3 iDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekeh 100
                  D++   ++n+++ lv +g++++vvp ++sa     l+ npdgi++s+Gpg+p+ ++ +ieai++++e +iP++GICLG+Qlla+++g+k++k+k ++h
  CTQ26371.1 197 YDFG--AKRNILRMLVDRGCRLTVVPAKTSAADV--LALNPDGIFLSNGPGDPApCDYAIEAIEKFLETDIPVFGICLGHQLLALASGAKTIKMK-FGH 290
                 5777..99*********************99999..589********************************************************.*** PP

                 EEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHHHH CS
      GATase 101 hggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnflik 189
                 hgg+++++d       +++ ++i++++H+++v++ +++pa+l+vt+ks  d++l +i + ++p++++Q HPE++++p+++++lf+ +i+
  CTQ26371.1 291 HGGNHPVKD------IDNNVVMITAQNHGFAVDE-ATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIE 372
                 *********......66669*************9.***************************************************997 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.9e-09     1e-05      93     216 .]     250     355 ..     238     355 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.9e-09
  Peptidase_C26  93 lelaLiraalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaike..laeelr 186
                    + +  i++ le ++P++giC+G+qll+ a G ++   i++  ++ +h        +h vk   + ++           +  H +a++e  l  +lr
     CTQ26371.1 250 YAIEAIEKFLETDIPVFGICLGHQLLALASGAKT---IKM--KFGHH------GGNHPVKDIDNNVVMIT--------AQNHGFAVDEatLPANLR 326
                    6778899********************9999765...443..22222......34566654444433222........335777777666777777 PP

  Peptidase_C26 187 veAvae.DgviEaieseeakafvlgvQwHPE 216
                    v+  +  Dg+   i+ ++  +++++ Q HPE
     CTQ26371.1 327 VTHKSLfDGTLQGIHRTD--KPAFSFQGHPE 355
                    777777777777777777..35777777777 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.9e-06     0.018      48     115 ..     219     283 ..     193     291 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.9e-06
                 EE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEEETTTHHHHHHTTTTTT CS
   DJ-1_PfpI  48 vtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekgklvaaICagpqlLaaagvlkg 115
                 v++ +s  dv a + D + l  G   p + + ++ ++e + +f+e + +v+ IC g qlLa a+  k 
  CTQ26371.1 219 VPAKTSAADVLALNPDGIFLSNG---PGDPAPCDYAIEAIEKFLETDIPVFGICLGHQLLALASGAKT 283
                 55677777888888888888877...66899999**************************98887665 PP

>> Ish1  Putative stress-responsive nuclear envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.41       5      19 ..      94     108 ..      94     117 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
        Ish1   5 SdsdLkkWLdshGip 19 
                 S++dL ++L+ h+i+
  CTQ26371.1  94 STEDLSSYLKRHNIV 108
                 89************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2831.90
//
Query:       CTQ26372.1  [L=1074]
Description: carbamoyl-phosphate synthase, large subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.9e-118  393.5   1.9      4e-77  258.5   0.0    2.4  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    3.9e-40  137.0   0.0    1.1e-39  135.6   0.0    1.8  1  CPSase_L_D3      Carbamoyl-phosphate synthetase large chain, 
    8.5e-19   67.5   0.1    4.7e-18   65.2   0.0    2.4  2  MGS              MGS-like domain
      2e-15   56.8   0.3    9.5e-08   31.8   0.2    2.3  2  ATP-grasp        ATP-grasp domain
    2.3e-12   47.3   0.4    1.2e-08   35.1   0.0    2.7  2  ATP-grasp_3      ATP-grasp domain
    7.1e-12   45.2   0.9    1.8e-07   31.0   0.0    3.3  3  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
    6.5e-11   42.1   0.4    6.4e-06   25.8   0.2    2.3  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    4.7e-10   39.3   0.2    5.5e-05   22.8   0.0    4.5  4  ATP-grasp_4      ATP-grasp domain
    0.00017   22.1   0.0          4    8.0   0.0    4.1  3  CoA_binding_2    CoA binding domain
     0.0017   17.9   0.1        5.1    6.5   0.0    3.5  3  ATP-grasp_5      ATP-grasp domain
  ------ inclusion threshold ------
      0.029   14.2   0.0      0.064   13.1   0.0    1.5  1  SmpA_OmlA        SmpA / OmlA family


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.5   0.0   2.4e-80     4e-77       1     210 [.     128     334 ..     128     335 .. 0.99
   2 !  134.2   0.5   2.6e-42   4.3e-39       1     210 [.     674     876 ..     674     877 .. 0.94

  Alignments for each domain:
  == domain 1  score: 258.5 bits;  conditional E-value: 2.4e-80
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D+++++ a+kki+ ++++s +a  +t+eeala+a+++g+P+ii+++f++GG+G+++a+n+ee++e+++++l+ ++    ++++l+++sl g+ke+E+e
   CTQ26372.1 128 DRRRFDIAMKKIGLDTARSGIA--HTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSP----TNELLIDESLIGWKEYEME 219
                  99********************..**************************************************7....9****************** PP

                  EEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEE.EEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS- CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgag.tveflldpkskeyyviEvNtRlsvesalaekaTGl 193
                  v+rD+++n+i+vc++en++++  +t+++i+vAP+qtLtd+e+q++r+a+++v+re+gv+++g +v+f+++pk+++ +viE+N+R+s++sala+kaTG+
   CTQ26372.1 220 VVRDKNDNCIIVCSIENFDAMgiHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGsNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGF 317
                  **********************************************************98887*********************************** PP

                  -HHHHHHHHHTT--GCG CS
  CPSase_L_D2 194 dlvkeaakialgekLee 210
                  +++k+aak+a+g++L+e
   CTQ26372.1 318 PIAKVAAKLAVGYTLDE 334
                  ***************97 PP

  == domain 2  score: 134.2 bits;  conditional E-value: 2.6e-42
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D+e++++a+++++ +    +++  + +e+a++ akeigyP ++++++ lGG+ m ++++e++l+  +++a++ ++    ++ vl++++l+   e++v+
   CTQ26372.1 674 DRERFQHAVDRLKLKQPANATV--TAIEQAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFQTAVSVSN----DAPVLLDRFLDDAIEVDVD 765
                  99**********9998776666..9*************************************************5....99***********999999 PP

                  EEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS-- CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGld 194
                   + D +  v++ + +e + q   + +++    P+ tL++e  + +re+  k++ e++v+g  +v+f+++  ++e y+iEvN+R  +  +  +kaTG++
   CTQ26372.1 766 AICDGE-MVLIGGIMEHIEQAgvHSGDSACSLPAYTLSKEIQDVMREQVQKLAFELQVRGLMNVQFAVK--DNEVYLIEVNPRAARTVPFVSKATGVP 860
                  999975.4555678999999999*********************************************9..59************************* PP

                  HHHHHHHHHTT--GCG CS
  CPSase_L_D2 195 lvkeaakialgekLee 210
                  l+k+aa++ +g++L +
   CTQ26372.1 861 LAKVAARVMAGKTLAQ 876
                  *************986 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.0   6.5e-43   1.1e-39       2     122 .]     427     547 ..     426     547 .. 0.97

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 6.5e-43
  CPSase_L_D3   2 elkeptdeRifaiaealrrglsveeiheltkidpwFLekleelvelekelkkkkk.eldeellreakklGfsDkqiaelleeeeeeevrelrkklgil 98 
                  elk++ +eRi++ia+a+r+glsv+ +++lt+id+wFL ++eelv+le+++++     ld++ lr++k++Gf D+++a+l++  +e+e+r+lr +++++
   CTQ26372.1 427 ELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGInGLDADFLRTLKRKGFADARLAKLAG-VREAEIRKLRDQYDLH 523
                  789999**********************************************99889**********************76.78888*********** PP

  CPSase_L_D3  99 pvykrvDtcAaeFeaetpYlYstY 122
                  pvykrvDtcAaeF+++t+Y+YstY
   CTQ26372.1 524 PVYKRVDTCAAEFATDTAYMYSTY 547
                  ***********************9 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.4   8.8e+03       4      19 ..     649     664 ..     648     665 .. 0.69
   2 !   65.2   0.0   2.9e-21   4.7e-18       2      94 ..     957    1041 ..     956    1042 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.4
                 HHHHHHHHTTCEEEEE CS
         MGS   4 elakklkelgfellAT 19 
                 +la++l+++g+ ++ T
  CTQ26372.1 649 KLARALEAAGVPVIGT 664
                 5777777777777776 PP

  == domain 2  score: 65.2 bits;  conditional E-value: 2.9e-21
                  HHHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCHHHHHHHHTTSCCEEEEE--THHHHHHCHHHHHHHHHHHTTSHEE CS
         MGS    2 lvelakklkelgfellATgGTakllkeagipvtevvektgegerlggrveildaikngeidlvintlypfkatvakdgykirraaenidIplp 94  
                  +v+la kl + gfel AT+GTa +l eagi+  ++v+k++eg r++    i+d+iknge+ ++int+ +++a +  d++ irr a+++++ + 
  CTQ26372.1  957 VVDLAAKLLKFGFELDATHGTAIVLGEAGIN-PRLVNKVHEG-RPH----IQDRIKNGEYTYIINTTAGRQAIE--DSKLIRRSALQYKVHYD 1041
                  799****************************.**********.***....*********************998..9*************985 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.9e-08   6.4e-05       2     161 ..     137     305 ..     136     313 .. 0.85
   2 !   31.8   0.2   5.8e-11   9.5e-08       3     160 ..     684     846 ..     682     849 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.9e-08
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC.....GTTCEEEEE----SEEEEEEEEEETTC-EEE--E CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal.....keekvivEefvpfekElsvlvvrsaeGetafypv 95 
                 +k gl ++r  ++++ ee+ ++a+++g+p++++ +     G G  +  ++e+ e++ e       ++e +i E+ + + kE  + vvr+++ +  ++  
  CTQ26372.1 137 KKIGLDTARSGIAHTMEEALAVAADVGFPCIIR-PSFTMGGTGGGIAYNREEFEEICERGldlspTNELLIDESLIGW-KEYEMEVVRDKNDNCIIVCS 233
                 7899*****************************.99999999999999*99999999987788855566666666766.57888899************ PP

                 EEEEEETTEEE...EEEECEE-SCHHHHHHHHHHH.HHHHHHTS.SEEEEEEEEEE.TTCTEEEEEEESS-- CS
   ATP-grasp  96 vetvqedgilr...lsvapaevsekaqkkaeeiak.kiveeLgg.vGvfavElFvl.edgellvnElapRpH 161
                 +e+    gi     + vapa+  ++++ ++ + a+  +++e+g+  G   v + v  ++g+l+v E+ pR+ 
  CTQ26372.1 234 IENFDAMGIHTgdsITVAPAQTLTDKEYQIMRNASmAVLREIGVeTGGSNVQFAVNpKNGRLIVIEMNPRVS 305
                 ********98533378999999999998888888768899999756888999888867788*********85 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 5.8e-11
                 TTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EE.E--EE CS
   ATP-grasp   3 klglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGeta.fypvv 96 
                 +l+l+ p  ++v+  e++ e a+e+g+p+vv+ +     G+   +v +e+dl++ ++++    ++ +v++  f +   E+ v ++   +Ge++ +  ++
  CTQ26372.1 684 RLKLKQPANATVTAIEQAVEKAKEIGYPLVVR-PSYVLGGRAMEIVYDEQDLRRYFQTAvsvsNDAPVLLDRFLDDAIEVDVDAIC--DGEMVlIGGIM 779
                 678999999999****99999***********.99999***************99999999999****************998886..56655155688 PP

                 EEEEETTEE....EEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS- CS
   ATP-grasp  97 etvqedgil....rlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRp 160
                 e++++ g+       s+  +++s+++q   +e+++k++ eL++ G++ v + v+ d+e+++ E+ pR 
  CTQ26372.1 780 EHIEQAGVHsgdsACSLPAYTLSKEIQDVMREQVQKLAFELQVRGLMNVQFAVK-DNEVYLIEVNPRA 846
                 899887765222145666677888899999*******************97666.999********96 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00056      0.92      31     158 ..     163     304 ..     137     307 .. 0.74
   2 !   35.1   0.0   7.5e-12   1.2e-08       9     158 ..     680     846 ..     672     849 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00056
                  SSSEEEEESS-------B--SS--TTE................EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET....TEEEEEEES----HHHH CS
  ATP-grasp_3  31 ekklvvKprdGaggesvrvveekeeaeaaieeve.........lvqefieGkplSvsllsdgekvlvlavnrqliekaekefvyaGnvtpietelkee 119
                    ++++ p+  +gg++  ++ ++ee e+++e            +    i  k++ ++++ d++++ +++++ +  +  + +   +  v+p++t  ++e
   CTQ26372.1 163 GFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLdlsptnellIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKE 260
                  5689*******************99998888766889999995555566669******************9999987555444444566777655554 PP

                  HHHHHH...HHHTTST.T--EEEEEEEEESS...SEEEEEEESS- CS
  ATP-grasp_3 120 vvelae...evvekle.glaGyvGvDlvlkd..eepyviEvNPRl 158
                   + + +    v++++  +  G   v + ++   + ++viE NPR+
   CTQ26372.1 261 YQIMRNasmAVLREIGvE-TGGSNVQFAVNPknGRLIVIEMNPRV 304
                  444333000445556433.45555888876555899********8 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 7.5e-12
                  HHHTTT.S---...........-EESS--SSSEEEEESS-------B--SS--TTE...............EEEE---.SEEEEEEEEE.SSSEEEEE CS
  ATP-grasp_3   9 kkLkeagvkvP.......tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve........lvqefie.GkplSvsllsdgekvlvla 90 
                  ++ ++ ++k P        +   e+++e  ++lvv p++  gg ++ +v +++++ + +++          l+ +f++   ++ v++++dge vl+  
   CTQ26372.1 680 HAVDRLKLKQPanatvtaIEQAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFQTAVsvsndapvLLDRFLDdAIEVDVDAICDGEMVLIGG 777
                  556666667775544322233345666669**********************999999988778999****999**96378**********8877777 PP

                  EEEEEEET....TEEEEEEES-..---HHHHHHHHHHHHHTTST...T--EEEEEEEEESS.SEEEEEEESS- CS
  ATP-grasp_3  91 vnrqliekaekefvyaGnvtpi..etelkeevvelaeevvekle...glaGyvGvDlvlkdeepyviEvNPRl 158
                  + + + +      v +G ++ +   ++l++e++++++e v+kl    +++G++ v + +kd+e y+iEvNPR 
   CTQ26372.1 778 IMEHIEQA----GVHSGDSACSlpAYTLSKEIQDVMREQVQKLAfelQVRGLMNVQFAVKDNEVYLIEVNPRA 846
                  76665554....6666655433112367999999999999999887899***********************6 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00023      0.37      51     115 ..     266     334 ..     251     345 .. 0.74
   2 ?   -1.2   0.1      0.96   1.6e+03      18      56 ..     669     708 ..     667     710 .. 0.76
   3 !   31.0   0.0   1.1e-10   1.8e-07      49     115 ..     809     876 ..     749     890 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00023
  ATPgrasp_Ter  51 elaerlaeefgld.glvnvQvrededg..pkLLEiNpRasGGlg.ysalaGvnlpylalklllgletee 115
                   +++ ++ +e+g++ g  nvQ+  + ++  + ++E+NpR+s      s ++G  ++++a+kl+ g   +e
    CTQ26372.1 266 NASMAVLREIGVEtGGSNVQFAVNPKNgrLIVIEMNPRVSRSSAlASKATGFPIAKVAAKLAVGYTLDE 334
                   45667788888863578***9987665468899******96555156777***********99965544 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.96
  ATPgrasp_Ter  18 vDvlaekgevlaavpRrKe.kgglqelekdeelielaerl 56 
                   +D   ++ +   av R K  +    ++++ e+++e a+++
    CTQ26372.1 669 IDRAEDRERFQHAVDRLKLkQPANATVTAIEQAVEKAKEI 708
                   6666778888899999999444455899999999988765 PP

  == domain 3  score: 31.0 bits;  conditional E-value: 1.1e-10
  ATPgrasp_Ter  49 lielaerlaeefgldglvnvQvrededgpkLLEiNpRasGGlg.ysalaGvnlpylalklllgletee 115
                   + e +++la e+++ gl+nvQ+  ++++ +L+E+NpRa+ ++  +s ++Gv l+++a++ + g+  ++
    CTQ26372.1 809 MREQVQKLAFELQVRGLMNVQFAVKDNEVYLIEVNPRAARTVPfVSKATGVPLAKVAARVMAGKTLAQ 876
                   457899************************************8357778************9973333 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.7e-05     0.028      26     174 ..     153     302 ..     133     308 .. 0.81
   2 !   25.8   0.2   3.9e-09   6.4e-06      28     174 ..     701     844 ..     682     857 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
                      HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT..-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHH CS
  Dala_Dala_lig_C  26 ellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafky..dekvlvEeai.egreievavlgneklevsevgeivvkkgfydyeak 116
                      e   +v + +g+p++++p+ +    G   + ++ee++e  e+ +    +++ l++e +   +e e+ v+ + + ++  v  i    + +d    
       CTQ26372.1 153 EEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLspTNELLIDESLiGWKEYEMEVVRDKNDNCIIVCSI----ENFDAMGI 242
                      55678999***********98888899999***********98754227899998777699********9777777655554....44666666 PP

                      HC.TT-EEESS----HHHHHHHHHHHHHHHHHTT-.-SEEEEEEEE.ETTTEEEEEEEES CS
  Dala_Dala_lig_C 117 ysddkaqlevpaklekeveekiqelalkaykaldl.rGlaRvDffl.teegeivlnEvNt 174
                      +++d++++    +l++++++ ++++++ + + +++ +G + v f +  ++g++++ E+N+
       CTQ26372.1 243 HTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVeTGGSNVQFAVnPKNGRLIVIEMNP 302
                      67788888888888999999999999999999998359999***9977889999999996 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 3.9e-09
                      HHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHT..T-SCEEEEE--.ESEEEEE.EEEETSSCEEEEEEEEE-SSSSS-HHHHH CS
  Dala_Dala_lig_C  28 lekveeelgypvfVKpareGSSvGvskveseeelkeaieeafk..ydekvlvEeai.egreiev.avlgneklevsevgeivvkkgfydyeaky 117
                        +  +e+gyp++V+p+       ++ v  e++l++++++a++   d+ vl ++++ ++ e++v a+ + e + +  + e++ + g+   +   
       CTQ26372.1 701 AVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFQTAVSvsNDAPVLLDRFLdDAIEVDVdAICDGEMVLIGGIMEHIEQAGVHSGDSAC 794
                      33445789*********9888889***************9975226889*******99******556666778999999**9999997655444 PP

                      C.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEES CS
  Dala_Dala_lig_C 118 sddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNt 174
                        +   +    +l+ke+++ ++e + k    l++rGl  v f ++ ++e++l EvN+
       CTQ26372.1 795 --SLPAY----TLSKEIQDVMREQVQKLAFELQVRGLMNVQFAVK-DNEVYLIEVNP 844
                      ..23344....566666666666666666679***********98.9*********7 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.4e-08   5.5e-05       2     151 ..     163     303 ..     162     309 .. 0.84
   2 ?    0.2   0.0      0.31     5e+02      73     100 ..     590     618 ..     570     629 .. 0.54
   3 ?   -2.3   0.0       1.8     3e+03       9      37 ..     660     688 ..     660     705 .. 0.73
   4 !    9.6   0.0    0.0004      0.65       2     152 ..     709     846 ..     708     850 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.4e-08
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflv.EeyieGeEfavdayfdeeGepvilnilkkefaseedvsdrl 98 
                   +P++i+Ps  ++  G  ++ n+ee+++ +++  +                ++ l+ E++i  +E+ +++  d++ + +i+  ++   a+  ++ d +
   CTQ26372.1 163 GFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDL------------SPTNELLIdESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSI 248
                  69************************9955554422............223445552677888************999999888999999999***** PP

  ATP-grasp_4  99 yvtsakvieetleal.eellkevnallglknfpvHiElrvs.edgkiipiEvnpl 151
                   v +a+ ++++++++  ++  +v +++g++ + + + + v+ ++g++i+iE+np+
   CTQ26372.1 249 TVAPAQTLTDKEYQImRNASMAVLREIGVETGGSNVQFAVNpKNGRLIVIEMNPR 303
                  ****998888887774788899******************94567*********6 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.31
  ATP-grasp_4  73 deeGepvilnilkkefasee.dvsdrlyv 100
                   e+G+++i+   + e+ s++ d+sdrly+
   CTQ26372.1 590 REDGYETIMVNCNPETVSTDyDTSDRLYF 618
                  34455444444444433333146666665 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.8
  ATP-grasp_4   9 PsvgffSlGVykinneeewkaavaaieee 37 
                  P++g++   + +++++e +++av++++ +
   CTQ26372.1 660 PVIGTSPDAIDRAEDRERFQHAVDRLKLK 688
                  677777778889999999****9999854 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.0004
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyie.GeEfavdayfdeeGepv.ilnilkkefaseedvsdr 97 
                   +P+v++Ps   + + + ++ +e+++++ +++              +v +++ +l+  +++   E+ vda    +Ge v i  i+++  +   +  d 
   CTQ26372.1 709 GYPLVVRPSYVLGGRAMEIVYDEQDLRRYFQTA------------VSVSNDAPVLLDRFLDdAIEVDVDAIC--DGEMVlIGGIMEHIEQAGVHSGDS 792
                  577777777777777777777777777644332............234556667777777624599999999..566651557999987766666666 PP

  ATP-grasp_4  98 lyvtsa.kvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnplr 152
                     ++a  +++e ++ + e +++++ +l+++ + + + + v+++ ++++iEvnp++
   CTQ26372.1 793 ACSLPAyTLSKEIQDVMREQVQKLAFELQVR-GLMNVQFAVKDN-EVYLIEVNPRA 846
                  5555541455566777788888888888775.778999999986.8********64 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0024         4       6      51 ..      20      65 ..      18     127 .. 0.78
   2 ?    2.4   0.0      0.13   2.2e+02      20      90 ..     375     443 ..     368     449 .. 0.73
   3 !    6.2   0.0    0.0084        14      65     107 ..     620     663 ..     586     669 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0024
                   ET--S-TTSHHHHHHHHHHHHT--EEEESSS-SEETTEES----T. CS
  CoA_binding_2  6 vGasdnpgkfgykvlryllehglpvvpVnpkeeeilgekvyaslae 51
                   +G   + +  g ++ + l+e+g++v+ Vn +  +i   ++ a+ + 
     CTQ26372.1 20 IGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATY 65
                   555555666789999********************99998777664 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.13
                    HHHHHHHT--EEEESSS-SEETTEES----T....T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT-- CS
  CoA_binding_2  20 lryllehglpvvpVnpkeeeilgekvyaslaedpepvdlvdvftppeatpeivkealalgakavwlqpgse 90 
                    + ++++ g +v+++  +++e l  k+ + l+   +  d  + +  pea+ +i +e++++ga+++w  + ++
     CTQ26372.1 375 TTQMKSVG-EVMAIGRTQQESLQ-KALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAF 443
                    56666677.77777777766555.66666664246666666677899******************887665 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0084
                    HHHHGGGHHHHHHH--SEEEE-TT---H.HHHHHHHHTT-EEE. CS
  CoA_binding_2  65 peatpeivkealalgakavwlqpgsede.eaaelaeeagirvvg 107
                    p +++++++ +  +++k+v++q g + + ++a+++e+ag++v+g
     CTQ26372.1 620 PVTLEDVLEIVRIEKPKGVIVQYGGQTPlKLARALEAAGVPVIG 663
                    555556666666669********96654389999999*****97 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0031       5.1      19      52 ..     136     169 ..     129     173 .. 0.92
   2 ?    3.9   0.0     0.019        31      22      52 ..     685     715 ..     672     718 .. 0.85
   3 ?    2.7   0.0     0.044        71     115     166 ..     967    1022 ..     946    1037 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0031
  ATP-grasp_5  19 leaygipvvetrlassaeeaveaaeeigypvvlK 52 
                  ++ +g++++++ +a++ eea+++a+ +g+p+ ++
   CTQ26372.1 136 MKKIGLDTARSGIAHTMEEALAVAADVGFPCIIR 169
                  5789**************************9875 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.019
  ATP-grasp_5  22 ygipvvetrlassaeeaveaaeeigypvvlK 52 
                  + ++ +    ++  e+ave a+eigyp v++
   CTQ26372.1 685 LKLKQPANATVTAIEQAVEKAKEIGYPLVVR 715
                  56677788889999*************9986 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.044
  ATP-grasp_5  115 vgvteDpvFGpvilfGlGGtavevlkdvavalpp....lnstlareliertkaskl 166 
                    g + D++ G  i++G++G+   ++++v+ + p     +++ ++ ++i+ t   ++
   CTQ26372.1  967 FGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHiqdrIKNGEYTYIINTTAGRQA 1022
                   57788*********************998777776666444444444444444444 PP

>> SmpA_OmlA  SmpA / OmlA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.9e-05     0.064      26      62 ..     997    1041 ..     994    1045 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.9e-05
                  -S-SEE-SSSSSEEEEEEEETTE.............EEEEEEEE- CS
   SmpA_OmlA   26 GsPsltdtfdpnrwdYvynfkrggka........veqqvlavyFd 62  
                  G+P+++d +++ ++ Y+ n++ g++a         +  +++v++d
  CTQ26372.1  997 GRPHIQDRIKNGEYTYIINTTAGRQAiedsklirRSALQYKVHYD 1041
                  9************************97777776666777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1074 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 7457.13
//
Query:       CTQ26373.1  [L=77]
Description: hypothetical protein CH1034_120011 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-18   65.1   4.1    4.5e-18   64.9   4.1    1.1  1  DUF903    Bacterial protein of unknown function (DUF903)
  ------ inclusion threshold ------
       0.13   11.6   0.1       0.13   11.6   0.1    1.1  1  DUF599    Protein of unknown function, DUF599


Domain annotation for each model (and alignments):
>> DUF903  Bacterial protein of unknown function (DUF903)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   4.1     5e-22   4.5e-18       2      49 .]      26      74 ..      25      74 .. 0.96

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 5e-22
                EEEEETTS-EEEEES--EE-TTTSCEEEEBTT.S-EEEEEGGGEEEEEE CS
      DUF903  2 yvittkDGqtivtdgkPelDkdtGmyeYeDee.GkevqInkddVkqike 49
                + i t+DG+tivt+gkP++D+dtG+++Y+++e G+  qIn+d+Vk++ e
  CTQ26373.1 26 QSIKTTDGKTIVTSGKPQVDDDTGLVSYKNAEtGRVEQINRDQVKSMDE 74
                5699***************************99**************87 PP

>> DUF599  Protein of unknown function, DUF599
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.5e-05      0.13      58      80 ..       1      23 [.       1      55 [. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.5e-05
      DUF599 58 lrnlimastllAstaillisgla 80
                +rn+i  ++ lA+tai++++g+ 
  CTQ26373.1  1 MRNNILVASALAATAIMFVAGCS 23
                79******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 604.06
//
Query:       CTQ26374.1  [L=177]
Description: glutathione-regulated potassium-efflux system ancillary protein KefF [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-39  134.1   0.0    5.8e-39  133.9   0.0    1.0  1  Flavodoxin_2  Flavodoxin-like fold
    3.8e-07   30.0   0.0    6.1e-07   29.3   0.0    1.5  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.9   0.0   6.4e-43   5.8e-39       3     198 .]       2     167 ..       1     167 [. 0.90

  Alignments for each domain:
  == domain 1  score: 133.9 bits;  conditional E-value: 6.4e-43
                   EEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCCT-----CCCCHCCHHHHTTCHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHHHHH CS
  Flavodoxin_2   3 iLiinahprpeksfssalaqafvealekagphevtvrdLyadflpvlttrdlaaklayeekpadveseqiekllaadaivlqfPlwwfgvPailKgw 99 
                   iLii+ahp p   + s+++++++e++ + +   v++r Ly+                y+++++dv++eq ++l++ad++++q+P+ w++vP++lK w
    CTQ26374.1   2 ILIIYAHPYP--QH-SHANKRMLEQAGTLE-G-VEIRSLYQ---------------LYPDFNIDVAAEQ-AALARADLVIWQHPMQWYSVPPLLKLW 77 
                   9*********..34.78***********99.5.********...............799*77*******.*************************** PP

                   HHHHS-TTTSCEETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHHHHHHHHHTT-EEEEEEEEESCTCCCHHHHHHHHHHHHHH CS
  Flavodoxin_2 100 iDrvltagfafyteeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpplrgilgfiGikdvepvlvegvagaedeealaealerlee 196
                   +D+vl +g+a+    g   +g +L+gk+++++vttGg e++++    +g  +  l +pl++++ ++G+k+++p++++ +  + d+e+l++ ++ +++
    CTQ26374.1  78 MDKVLAHGWAY----G--HNGIALRGKSLMWAVTTGGGESHFDIGSFPG--FPVLAQPLQATALYCGMKWLPPFAMHCTF-ICDDETLQAQARHYRQ 165
                   ***********....4..2348999*************9*999888887..5567777******************9975.4447789999999998 PP

                   HH CS
  Flavodoxin_2 197 ll 198
                   +l
    CTQ26374.1 166 RL 167
                   76 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   6.8e-11   6.1e-07      61     123 ..      44     112 ..      13     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 6.8e-11
                 HHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-......SSCHCCTT-EEEEE.EE-SSTTT CS
     FMN_red  61 ddvaellekiaaadaliivtPeYngsysgllKnalDrlsr.....trgkkelrgKpvalv.avgggrrg 123
                  dva+  +++a ad +i+  P  ++s+++llK  +D + +      +++ +lrgK ++ + ++ggg+++
  CTQ26374.1  44 IDVAAEQAALARADLVIWQHPMQWYSVPPLLKLWMDKVLAhgwayGHNGIALRGKSLMWAvTTGGGESH 112
                 577888899*****************************88*****9*********99876255666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1513.22
//
Query:       CTQ26375.1  [L=621]
Description: potassium:proton antiporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-62  210.1  50.3    5.6e-62  209.7  50.3    1.0  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
    7.4e-25   87.5   0.2    6.2e-24   84.5   0.0    2.3  2  TrkA_N          TrkA-N domain
  ------ inclusion threshold ------
      0.074   13.5   0.0       0.17   12.4   0.0    1.6  1  NAD_binding_7   Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.7  50.3   9.3e-66   5.6e-62       2     379 ..      11     374 ..      10     380 .. 0.95

  Alignments for each domain:
  == domain 1  score: 209.7 bits;  conditional E-value: 9.3e-66
                     HHHHHHHHHHHHHHHHTTSXHHHHHHHHHHHHTTTTTS.....HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   2 vllillallvgllarrlklpeivgliiaGlllGpsglgliepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliGl 96 
                     ++l+++al+v++ a rl+l++++g++iaG+++Gp+gl l+ +  e + +++e+g++l lF +Gleld+++l+k + s++ ++ l+++++ vliGl
      CTQ26375.1  11 IYLGAAALIVPI-AVRLGLGSVLGYLIAGCIIGPWGLRLVTDA-EAILHFAEIGVVLMLFVIGLELDPQRLWKLRASVFGGGALQMVACGVLIGL 103
                     678888999**9.*****************************9.*************************************************** PP

                     HHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger  97 llylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllllliflvvavggl 191
                     ++ l   lg+++  a l+g+ l++++++++++ + e++++ +++g+ ++++++++D++a++l+a+++ la    gg+tsl++++l++l va+++ 
      CTQ26375.1 104 FCML---LGLRWQVAELIGMTLALSSTAIAMQAMNERNLTVSQMGRSAFAVLLFQDIAAIPLVAMIPLLA--ASGGATSLMAFALSALKVAAALA 193
                     *997...799************************************************************..99********************* PP

                     HHHHHHHHHHHHHHHHS..CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHSXHH CS
  Na_H_Exchanger 192 llglvigwllrlitrft..dddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnklseklesfreglfnplfFvlvGlsldlk 284
                     l+ ++  +l+r ++rf+  ++ re++ +++l l++++ ll e +g+s+++gaflaG++l+ +e+++ l+ ++e+f  gl+++lfF+ vG+s+d+ 
      CTQ26375.1 194 LVVVLGRYLTRPLLRFVarSGLREVFSAVALFLVFGLGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFK-GLLLGLFFIGVGMSIDFG 287
                     *****************999********************************************************.****************99 PP

                     HHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTTSSTTTCSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger 285 vlnnhlsvlilvllilvaillgrilavflllrllglslrealiigfgglqrgavalalaalgpalgllarelyallivvvlftvlvqGlslkpll 379
                      l   + +++ ++++lv +l+++ l  +l++r lg+++ ++  +++++ q  ++a++++ +++++ +l+ e+  +l+++v +++       +p+l
      CTQ26375.1 288 TL---VTHPLRIVILLVGFLAIKMLMLWLIARPLGVPRAQRRWFAVLLGQGSEFAFVVFGAARMADVLDGEWAKALTLAVALSMA-----ATPIL 374
                     99...7777777777777779*****************999999988888**********************9999999999998.....44443 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0     1e-27   6.2e-24       1     111 [.     402     512 ..     402     514 .. 0.97
   2 ?   -0.2   0.0      0.19   1.1e+03      53      80 ..     545     572 ..     538     587 .. 0.87

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 1e-27
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESSG CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqdp 99 
                 +i++G+Gr+G+   + L ++g ++v+ d+d+++v++lr+  ++v++gdat+ ++Le+ag+eka+++i a++d  +++ +v+ +ke++p+++ii+ra+d 
  CTQ26375.1 402 VIVAGFGRFGQIAGRLLLSSGVKMVILDHDPDHVDTLRKFDMKVFYGDATRVDLLESAGAEKAEVLINAIDDPHVSLELVARVKEHFPHLQIISRARDV 500
                 79*****************6656**************************************************************************** PP

                 GGHHHHHHHTTS CS
      TrkA_N 100 ehaellkklgad 111
                 +h   l+++g++
  CTQ26375.1 501 DHYIQLRQAGVE 512
                 *********986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.19
                 HHHHHTTGGGESEEEE-SSSHHHHHHHH CS
      TrkA_N  53 evLeeagiekadaviaatgddeanilav 80 
                 ++ ++ +++ ++ ++a++++d+a+ +av
  CTQ26375.1 545 DLFRRFNLQMVEEMVAMAENDAASRVAV 572
                 6778899999999********9998876 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.8e-05      0.17       7      84 ..     399     486 ..     395     504 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.8e-05
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeeelekd...........legadlviaatddrelneriaeaaka 84 
                    + +v+v+G G+ ++   r ll++g k+++++ +  + ++ l k+  + + +d            e+a+++i a+dd++++ ++++  k+
     CTQ26375.1 399 QPRVIVAGFGRFGQIAGRLLLSSGVKMVILDHD-PDHVDTLRKFDMKVFYGDatrvdllesagAEKAEVLINAIDDPHVSLELVARVKE 486
                    6699**************************999.5566777776666665554455555555588899************999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.37
# Mc/sec: 5053.25
//
Query:       CTQ26376.1  [L=159]
Description: dihydrofolate reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-59  198.2   0.0    7.7e-59  198.0   0.0    1.0  1  DHFR_1    Dihydrofolate reductase


Domain annotation for each model (and alignments):
>> DHFR_1  Dihydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.0   0.0   4.3e-63   7.7e-59       1     161 []       1     158 [.       1     158 [. 0.98

  Alignments for each domain:
  == domain 1  score: 198.0 bits;  conditional E-value: 4.3e-63
                 EEEEEEEEETT-EEEBTTB-SS--HHHHHHHHHHHTTCEEEEEHHHHHCC-.S--TTCEEEEE-S-TT---TTEEEESSHHHHCCCCTTS.SEEEEEE- CS
      DHFR_1   1 kislivAvaengvIGkdnklpwhlpeDlkrFkklTtgkpvimGrkTfeslgkrpLpnrkniVltrnedlkvegvevvssleealalakeekeevfviGG 99 
                 +isli+A a ++vIG +n++pw+lp+Dl++Fk+ T++kpv+mGr T+es+g rpLp+rkniV+++++  + + v++vss+eea+a++ +  ee++viGG
  CTQ26376.1   1 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIG-RPLPGRKNIVISSKPGSD-DRVQWVSSVEEAIAACGDV-EEIMVIGG 96 
                 79************************************************9.***************976.68***********999999.9******* PP

                 HHHHHHCGGG-SEEEEEEESS----SEE-----CCCEEEEEEEEE--CTTC-S-EEEEEEEE CS
      DHFR_1 100 aeiYkqalpladklylTeidaefegdtffpeideeewelvereehekdeknkyaytfvtyer 161
                 +++Y+q+lp a+klylT+idae+egdt+fp++d++ewe v +e h++d +n+++y+f+++er
  CTQ26376.1  97 GRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILER 158
                 **********************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1236.78
//
Query:       CTQ26377.1  [L=282]
Description: diadenosine tetraphosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-15   55.7   0.1    3.5e-14   53.8   0.0    1.9  2  Metallophos    Calcineurin-like phosphoesterase
    5.7e-05   23.4   0.0      8e-05   22.9   0.0    1.2  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
  ------ inclusion threshold ------
      0.043   12.1   0.0       0.06   11.6   0.0    1.2  1  FBPase_2       Firmicute fructose-1,6-bisphosphatase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   5.9e-18   3.5e-14       2     139 ..       2     150 ..       1     195 [. 0.69
   2 ?   -0.6   0.0      0.27   1.6e+03      98     133 ..     221     255 ..     153     276 .. 0.66

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 5.9e-18
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TTS........CHHH.HHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvkypipvylllGNHe........gfee.ellnkygylgi 90 
                  +  +igD+H     g++d+l++ll ++  ++++d + l+GDlv rg+ + e+l++++ l++    v l+lGNH+        g +  + +        
   CTQ26377.1   2 STYLIGDVH-----GCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGD---SVRLVLGNHDlhllavfaGISRnKPK-------- 83 
                  6789*****.....***********************************************...9*********6666555432221111........ PP

                  HHHHHEHH..............HCEEETSEEEEEETTE..EEEEEEESE.CEEE...........THHHHHHHHHHH CS
  Metallophos  91 fsepwrsd..............aevfnnlplaslgsgs..lkvlllhGg.spel...........lvsldklgslnl 139
                         d               +++   pl +        k++ +h+g +p +            + + + +s+++
   CTQ26377.1  84 -------DrlkplleapdadelLNWLRRQPLLQ---VDeeKKLVMAHAGiTPQWdletaqqcardVEAVLSSDSYPF 150
                  .......11111222234322255555555555...33458899999997666655555445444444444444444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.27
                  HHCEEETSEEEEEETTE.....EEEEEEESECEEETHHHHH CS
  Metallophos  98 daevfnnlplaslgsgs.....lkvlllhGgspellvsldk 133
                  ++  f+++ + +  +++     l++ +++Gg      +l+ 
   CTQ26377.1 221 YSIAFGHWASLEGRGTPegiyaLDTGCCWGG------ELTC 255
                  3444445554442222246667777777777......3333 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.3e-08     8e-05       1      63 [.       1      82 [.       1     145 [. 0.63

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.3e-08
  Metallophos_2  1 MklaiiSDlHsnldaleavlealke.vgvdaiihaGDl...eeeepevleellela.pvlaVrGNnD..............e 63
                   M   +i D+H+ +d+l a+l++++   + d+++++GDl   + +++evl+ +++l   v+ V GN+D              +
     CTQ26377.1  1 MSTYLIGDVHGCYDELIALLAQVEFdPRRDTLWLTGDLvarGPGSLEVLRYVKSLGdSVRLVLGNHDlhllavfagisrnkP 82
                   88899**************9998743457********9655566667777777777***********666555555543321 PP

>> FBPase_2  Firmicute fructose-1,6-bisphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     1e-05      0.06     169     230 ..      14      76 ..       4      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1e-05
    FBPase_2 169 eefiialaeliqrlavdklhivGDiyDRGpeadkildeLmky.hsvdiqWGNHDilWmGaaaG 230
                 +e+i+ la++      d+l + GD+  RGp++  +l  + +  +sv +  GNHD+  ++  aG
  CTQ26377.1  14 DELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLgDSVRLVLGNHDLHLLAVFAG 76 
                 67777777777777789**********************986479**********99998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1991.83
//
Query:       CTQ26378.1  [L=125]
Description: protein associated with Co2+ and Mg2+ efflux [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-33  112.7   0.3    8.3e-33  112.5   0.3    1.1  1  DUF525    ApaG domain
  ------ inclusion threshold ------
      0.052   13.4   0.0      0.068   13.0   0.0    1.1  1  DUF4354   Domain of unknown function (DUF4354)
      0.057   13.5   0.1      0.077   13.1   0.1    1.3  1  Pax2_C    Paired-box protein 2 C terminal


Domain annotation for each model (and alignments):
>> DUF525  ApaG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5   0.3   1.4e-36   8.3e-33       2      86 ..      18     102 ..      17     103 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 1.4e-36
                 E--BTTB--EEEEEEEEEEE-SSS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEEEEEEESSSEEEEEEEEEEE CS
      DUF525   2 eqsspeeekyvfaYsirieneseesvqLlsRhweitdadgkveevegeGvvGeqPlLepgesFeYtSgvsletpsGsmeGsytmv 86 
                 +qsspeee+yvfaY+++i+n ++++vqLl R+w it+++g+++ev+geGvvGeqP++ +g +++YtSg+ +etp G+m+G+y+m 
  CTQ26378.1  18 SQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMI 102
                 79*********************************************************************************96 PP

>> DUF4354  Domain of unknown function (DUF4354)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.1e-05     0.068      27      81 ..       5      59 ..       2      71 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
                SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE-SSS-EE-TT-EEEEEETTS-E CS
     DUF4354 27 dkvivyatekdkgsvsveekaqytkafkvkvvNlsdseidLsksClvavsadkke 81
                ++v v  +    +s s++e++ y+ a+ v++ Nl++s+++L      + +  ++e
  CTQ26378.1  5 PRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRE 59
                5677777888889***************************976665555555555 PP

>> Pax2_C  Paired-box protein 2 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.3e-05     0.077      29      55 ..      61      87 ..      37      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
      Pax2_C 29 dlasttLpGypPHvPptgqgsystsal 55
                ++ ++ + G +PH+P+ g+ +y++ a+
  CTQ26378.1 61 EVQGEGVVGEQPHIPAGGEYQYTSGAV 87
                67788899**************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 914.53
//
Query:       CTQ26379.1  [L=273]
Description: S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-86  289.3   0.0    2.3e-86  289.2   0.0    1.0  1  RrnaAD    Ribosomal RNA adenine dimethylase
  ------ inclusion threshold ------
      0.052   13.5   0.0      0.099   12.6   0.0    1.5  1  H2TH      Formamidopyrimidine-DNA glycosylase H2TH domain


Domain annotation for each model (and alignments):
>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.2   0.0   2.6e-90   2.3e-86       2     264 ..       9     265 ..       8     266 .. 0.98

  Alignments for each domain:
  == domain 1  score: 289.2 bits;  conditional E-value: 2.6e-90
                 GCCXXGCG--EE--HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGHHHHHHHCTTTCC CS
      RrnaAD   2 nklrksygqnflknkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflkfetpeevtekdsi 100
                 + +rk++gqnfl+++ vi++I++++n+++ + ++eigpG ++lTe++ +r++q++v+Eld++La++lq+++++++kl++++qD++++++ e ++   ++
  CTQ26379.1   9 HLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAE---KM 104
                 5689***************************************************************************************885...9* PP

                 CCEEEEEEE--TTTHHHHHHHHHHGGGGCEEEEEEEEEHHHHHHHH--TTSTT-SHHHHHHHHHEEEEEEEEC-GGCECS--SSSEEEEEEEE-SS-S. CS
      RrnaAD 101 hqeflvvanlPyeistqlvkqlleesrfglvkmllwlqkefarrllarpgskkrsrlsvlreaftdvklvakveksifsPppkvdsalvelerkdedl. 198
                 +q+++v++nlPy+ist+l+++l++ +++++ +m+++lqke+++rl+a p+sk+++rlsv+++++++v +v++v++s+f+Pppkvdsa+v+l ++ +++ 
  CTQ26379.1 105 GQPLRVFGNLPYNISTPLMFHLFS-YTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPy 202
                 ***********************6.9999********************************************************************** PP

                 --S-HHHHHHHHHHHHCTTTSBCCCHCCCTSTCHHHHHCTT.T--TTTCCCCSGHHHHHHHHHHHH CS
      RrnaAD 199 pqkdlkkyesvvrkllnrkrktlstslksllpggelqalsstgindnalvkklsaeqtldifkela 264
                 p+k+++++++++++++n++rkt+++sl +l++ + l+ l   gi+  ++++++s++q++ ++++l 
  CTQ26379.1 203 PVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTEL---GIDPAMRAENISVAQYCLMANWLS 265
                 ***********************************9999...*********************985 PP

>> H2TH  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.1e-05     0.099      39      73 ..     229     263 ..     213     270 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
                 --HHHHHHHHHHTT--TTSBGGGS-HHHHHHHHHH CS
        H2TH  39 lGNiyadEvLfrakihPerlakslskeelellhqe 73 
                 lGN++  EvL   +i+P++ a+++s +++ l+++ 
  CTQ26379.1 229 LGNLFSVEVLTELGIDPAMRAENISVAQYCLMANW 263
                 8*************************999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2195.71
//
Query:       CTQ26380.1  [L=329]
Description: 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     7e-109  363.6   0.0   8.6e-109  363.3   0.0    1.0  1  PdxA      Pyridoxal phosphate biosynthetic protein PdxA


Domain annotation for each model (and alignments):
>> PdxA  Pyridoxal phosphate biosynthetic protein PdxA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.3   0.0  4.8e-113  8.6e-109       5     282 .]      34     321 ..      31     321 .. 0.95

  Alignments for each domain:
  == domain 1  score: 363.3 bits;  conditional E-value: 4.8e-113
                 EEEEE-HHHHHHHHHHH....EEEEEBTTSTCE....TEEEEEE.S.....BTTB--HHHHHHHHHHHHHHHHHHHTTSSSEEEE----HHHHHHTT-- CS
        PdxA   5 pvvvgdkkllekaakkl..elkleeieeaeeas....eelkvldve....veagkvsaesGaaalaslekAvelakegevdalvtaPinKeaikaaglk 93 
                  v+++d +ll ++ak+l  +l+l  ++ a++      ++l++l+v     +e+g ++ ++Ga+++++l +A++ +++ge++alvt+P++K +i++ag++
  CTQ26380.1  34 LVICADGALLTDRAKRLglPLSLLPYDPAQPLVpqraGTLTLLNVPlnvpAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIA 132
                 5788**********9998877777887777333445678888887434556************************************************ PP

                 -SSHHHHHHHHTTSSGSEEEEEETTEEEEESS-SS-GGGHHHH--HHHHHHHHHHHHHHHHHTTT.SSSEEEEE-SSGGGGTTTTTSSHHHHTHHHHHH CS
        PdxA  94 fpGhtellaeltgtkkvvmmlaseeLrvalvTthipLkevakaitkerllevlrllakalkrdfgiekpriaVaGLNPhaGenGllGrEEeeiiepaie 192
                 f+Ghte+++e+++++kvvmmla+eeLrvalvTth+pLk +++ait+e l e++++l+++l+++fgi++p+++V+GLNPhaGe+G++G+EE+++i+p++e
  CTQ26380.1 133 FTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLE 231
                 *************************************************************************************************** PP

                 HHHHCTHEEEEEE-HHHHTSHHHHTT-SEEEESSHHHHHHHHHHHHTTTEEEEEESSSSEEEEESS-S-TTCTTTT---THHHHHHHHHH CS
        PdxA 193 karaegievegplpaDtlFtkaalkkydavvamYHDqgliplKllafdegvnvtlGLpiirtSvDhGtafdiagkgkadekSlleAiklA 282
                 ++r++g++++gplpaDtlF+++ l ++dav+amYHDqgl++lK+ +f++gvn+tlGLp+irtSvDhGta+++ag+gkad +S+++A++lA
  CTQ26380.1 232 EMRTKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLA 321
                 ***************************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2511.20
//
Query:       CTQ26381.1  [L=428]
Description: peptidyl-prolyl cis-trans isomerase (PPIase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-51  173.0   0.2    4.4e-26   91.7   0.0    3.2  4  Rotamase      PPIC-type PPIASE domain
    8.7e-51  171.4   0.0    2.5e-26   92.5   0.0    2.5  2  Rotamase_3    PPIC-type PPIASE domain
    6.8e-46  155.2   6.9    6.8e-46  155.2   6.9    1.9  2  SurA_N        SurA N-terminal domain
      4e-18   66.4   0.1    2.1e-07   31.8   0.0    2.8  2  Rotamase_2    PPIC-type PPIASE domain
    1.6e-14   54.0   3.3    1.6e-14   54.0   3.3    2.5  3  SurA_N_3      SurA N-terminal domain
    3.9e-07   30.0   3.5    3.9e-07   30.0   3.5    2.6  3  SurA_N_2      SurA N-terminal domain
     0.0051   16.8   1.5     0.0051   16.8   1.5    2.4  3  Trigger_C     Bacterial trigger factor protein (TF) C-terminu
  ------ inclusion threshold ------
      0.097   12.7   0.0        0.3   11.2   0.0    1.9  1  Exonuc_VII_S  Exonuclease VII small subunit


Domain annotation for each model (and alignments):
>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         8   1.8e+04      65      73 ..      97     105 ..      86     119 .. 0.52
   2 ?   -1.8   0.0       2.8   6.3e+03      23      49 ..     144     169 ..     126     173 .. 0.68
   3 !   77.8   0.0   4.2e-25   9.4e-22       1      97 []     178     272 ..     178     272 .. 0.97
   4 !   91.7   0.0     2e-29   4.4e-26       1      95 [.     289     380 ..     289     382 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 8
                 -CCCHHHHC CS
    Rotamase  65 ppefekaaf 73 
                 +++++++a+
  CTQ26381.1  97 DQAIANIAK 105
                 222222222 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.8
                 HHHHCCTCCCHHHHHHHHCCC-.-CHH CS
    Rotamase  23 eeileqlksgedtFeelArkySddkns 49 
                 +e++ ++   +++ e+lA++   d+n 
  CTQ26381.1 144 NEVRRRITVLPQEVEALAKQIG-DQND 169
                 4566666666666777777777.4444 PP

  == domain 3  score: 77.8 bits;  conditional E-value: 4.2e-25
                 EEEESSCCSE----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEEEEEEEE- CS
    Rotamase   1 HILlkvkekasekeraeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGfhiikled 97 
                 HIL+ ++e+++++e a+a+++a++i eq+++g++ F +lA  yS d ++a +gG++gw + ++lp  f++a++++kkG+i++p+++  Gfhi+k++d
  CTQ26381.1 178 HILIPLPENPTSDEVAAAQEQANSIVEQARNGAN-FGKLAITYSAD-QQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVND 272
                 **********************************.*********55.55*********************************************985 PP

  == domain 4  score: 91.7 bits;  conditional E-value: 2e-29
                 EEEESSCCSE----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEEEEEEE CS
    Rotamase   1 HILlkvkekasekeraeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGfhiikl 95 
                 HILlk+++     ++a+a+ak+e+i++++ksg+ tF+++A+ yS+d++sa++gGdlgw +++ ++p+f++a+++l+kG+ s+pv+++fG+h+i+l
  CTQ26381.1 289 HILLKPSP---IMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIEL 380
                 ********...88999*****************************************************************************98 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   1.1e-24   2.5e-21       5     114 ..     163     272 ..     159     274 .. 0.91
   2 !   92.5   0.0   1.1e-29   2.5e-26      14     115 ..     283     383 ..     275     384 .. 0.93

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.1e-24
  Rotamase_3   5 klvdkksakdsvkvshIlistkgkesrseeea.kakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvvk 102
                 ++ d+++a+ ++++shIli + ++++++e +a +++a+s+++++++ga+F +lA +yS+D++ + +GG++gw   +++   F +a+ ++kkg+i ++++
  CTQ26381.1 163 QIGDQNDASTELNLSHILIPLPENPTSDEVAAaQEQANSIVEQARNGANFGKLAITYSADQQ-ALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIR 260
                 3455666777***********998888887777****************************9.***********99*********************** PP

  Rotamase_3 103 tdfGyHiikvtd 114
                 + +G+Hi kv d
  CTQ26381.1 261 SGVGFHILKVND 272
                 *********987 PP

  == domain 2  score: 92.5 bits;  conditional E-value: 1.1e-29
  Rotamase_3  14 dsvkvshIlistkgkesrseeeakakadsllaalk.egadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvvktdfGyHiik 111
                  +v+++hIl++   ++ +++++a+ak ++++a++k  +  Fa++Ak+yS+Dp+s+++GG+lgw t++ ++++F+da++ l+kg++s++v ++fG+H+i+
  CTQ26381.1 283 TEVHARHILLKP--SPIMNDAQAQAKLEQIAAEIKsGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIE 379
                 489*******97..789******************67779*********************************************************** PP

  Rotamase_3 112 vtdk 115
                  +d 
  CTQ26381.1 380 LLDS 383
                 9885 PP

>> SurA_N  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   6.9     3e-49   6.8e-46       1     118 []      25     142 ..      25     142 .. 0.99
   2 ?   -3.0   0.0       3.3   7.4e+03      65      86 ..     150     171 ..     146     174 .. 0.69

  Alignments for each domain:
  == domain 1  score: 155.2 bits;  conditional E-value: 3e-49
      SurA_N   1 ldrivavvnddvvlqseldervkevkkqlakqgkqlPpeavLerqvlerlilekiqlqeaektgirvddeelnqaiaeiAkeNkltldqlraalaedGl 99 
                 +d+++avvn++vvl+s++d  +++vk ++ + g+qlP++a+L++q+lerli+++i lq+++k+g++++d++l+qaia+iAk+N++tldq+r++la +G+
  CTQ26381.1  25 VDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGI 123
                 7************************************************************************************************** PP

      SurA_N 100 sydefreqiRkEiiisrlr 118
                 +y+++r+qiRkE++is++r
  CTQ26381.1 124 NYNTYRNQIRKEMLISEVR 142
                 *****************98 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.3
      SurA_N  65 irvddeelnqaiaeiAkeNklt 86 
                 i+v  +e+++  ++i  +N+ +
  CTQ26381.1 150 ITVLPQEVEALAKQIGDQNDAS 171
                 6667777777777777777765 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   9.2e-11   2.1e-07      30     112 ..     193     277 ..     136     285 .. 0.76
   2 !   31.7   0.0     1e-10   2.3e-07      31     112 ..     300     387 ..     291     396 .. 0.71

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 9.2e-11
  Rotamase_2  30 vkdqvaaeaalalakagaekdfaalakgnskkaadlgifesa...........snlpeelakaafalkpgevsgpvetdngyyivkvtevkpak 112
                 + +q++a ++ ++a+ ga+    a+ ++++ +         a           ++lp  +a+a++++k+g+++gp++++ g++i+kv++++ ++
  CTQ26381.1 193 AAAQEQANSIVEQARNGANFGKLAITYSADQQ---------AlkggqmgwgriQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGT 277
                 23344444444444444433333333333333.........24445555555666999*******************************99765 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 1e-10
  Rotamase_2  31 kdqvaaeaalalakagae.kdfaalakgnskkaadlg......ifesasnlpeelakaafalkpgevsgpvetdngyyivkvtevkpak 112
                 ++q++a++++ +a+ +++  +fa++ak +s+++++++      +++ +  +++++ +a+  l++g++sgpv++++g++++ + + ++ +
  CTQ26381.1 300 DAQAQAKLEQIAAEIKSGkITFAQAAKTYSEDPGSANqggdlgWATPDI-FDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVD 387
                 4555555555555555443456666666666644444334444777765.******************************998877655 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   3.3   7.3e-18   1.6e-14      40     161 ..      24     141 ..       4     142 .. 0.83
   2 ?   -0.2   0.0      0.33   7.5e+02      40      62 ..     309     332 ..     297     351 .. 0.75
   3 ?   -3.8   0.2       4.2   9.4e+03      62      78 ..     395     411 ..     384     418 .. 0.57

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 7.3e-18
    SurA_N_3  40 s....vakVngekIsraefqqayrrqleqlrqqlggnldaelldelglrqqvldqlidealllqeakklglsvsdeevakeiasipaFqedGkFdkerY 134
                      +a Vn+  +  ++++  ++ ++ ++ q       ++l d+++lr q+l++li ++++lq  +k+g+++sd++++++ia+i    ++++ + ++ 
  CTQ26381.1  24 VvdkvAAVVNNGVVLESDVDGLMQSVKLNAGQ-----AGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIA---KQNNMTLDQM 114
                 1334599****************997766554.....4556667889**************************************7...788999**** PP

    SurA_N_3 135 kqlLaangltpeefeaslredlllqkl 161
                 + +La  g++ +++++++r+++l++ +
  CTQ26381.1 115 RSRLAYEGINYNTYRNQIRKEMLISEV 141
                 ***********************9876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.33
    SurA_N_3  40 s.vakVngekIsraefqqayrrql 62 
                 + +a++   kI++a+  ++y++  
  CTQ26381.1 309 QiAAEIKSGKITFAQAAKTYSEDP 332
                 2499999999**999999998855 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 4.2
    SurA_N_3  62 leqlrqqlggnldaell 78 
                  + +r  +++++++e++
  CTQ26381.1 395 DRAYRMLMNRKFSEEAA 411
                 34455555556655554 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   3.5   1.7e-10   3.9e-07      42     129 ..      28     109 ..       5     117 .. 0.71
   2 ?   -0.6   0.3      0.48   1.1e+03      81     115 ..     124     157 ..     106     171 .. 0.47
   3 ?   -3.8   0.1       4.5     1e+04      40      60 ..     308     328 ..     300     331 .. 0.68

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.7e-10
    SurA_N_2  42 evaeVnGekIslqefqqaveearqqlqqqlgenfdeseedeaqlreqvldqlvseklleqeaeklGltvsdeelqdaiqgnpaikqsF 129
                 ++a Vn+  +  ++ +  ++  +     + g+  + +  d+a lr q+l++l+ ++++ q  +k+G+++sd++l++ai ++   ++++
  CTQ26381.1  28 VAAVVNNGVVLESDVDGLMQSVKL----NAGQAGQ-QLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAK-QNNM 109
                 555555555555555555555555....5555533.345679*************************************9555.2334 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.48
    SurA_N_2  81 deaqlreqvldqlvseklleqeaeklGltvsdeel 115
                 + +  r+q+ +++  +++ ++e+++  +tv  +e+
  CTQ26381.1 124 NYNTYRNQIRKEMLISEVRNNEVRR-RITVLPQEV 157
                 2334444444444444444444433.344444444 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 4.5
    SurA_N_2  40 snevaeVnGekIslqefqqav 60 
                 ++ +ae+   kI++++  +++
  CTQ26381.1 308 EQIAAEIKSGKITFAQAAKTY 328
                 567788888888777655555 PP

>> Trigger_C  Bacterial trigger factor protein (TF) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.5   2.3e-06    0.0051      83     154 ..      63     135 ..      37     143 .. 0.77
   2 ?   -2.7   0.0       2.3   5.1e+03      47      77 ..     196     220 ..     181     227 .. 0.58
   3 ?   -3.8   0.1       4.9   1.1e+04     115     127 ..     302     314 ..     298     331 .. 0.50

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.3e-06
                 CHHCHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHCCCTTSXHHHHHHHHHHXHHHH.HHHHHHHHH CS
   Trigger_C  83 reelkeeAekrVklgLvleeiakeekievteeelkeeleelasqygmepeevkeflkkneqls.alkedilee 154
                 ++ l+ ++ +r+ ++ ++ +++++ ++++++++l+++++++a+q +m  +++++ l+ ++    + ++ i++e
  CTQ26381.1  63 DATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYnTYRNQIRKE 135
                 4678889999999999999999******************************998876665555666666665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHHHCT...TSSHHCHHHHHCT CS
   Trigger_C  47 eeeidrllrqakqqleqqGldleeylelsgs 77 
                 +e+++++++qa     ++G+++ + l+++ s
  CTQ26381.1 196 QEQANSIVEQA-----RNGANFGK-LAITYS 220
                 34444444444.....45666666.455555 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 4.9
                 HHHHHHHHHCCCT CS
   Trigger_C 115 elkeeleelasqy 127
                 + +++le++a + 
  CTQ26381.1 302 QAQAKLEQIAAEI 314
                 3344444444333 PP

>> Exonuc_VII_S  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014       0.3       3      31 ..     302     330 ..     301     330 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
  Exonuc_VII_S   3 ealaeLeeIvekLEsgelsLeeslklyee 31 
                   +a a+Le+I++++ sg+++  ++ k y e
    CTQ26381.1 302 QAQAKLEQIAAEIKSGKITFAQAAKTYSE 330
                   6889********************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1169  (0.0652016); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3114.85
//
Query:       CTQ26382.1  [L=782]
Description: exported protein required for envelope biosynthesis and integrity [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.2e-110  368.0  29.9   6.2e-110  368.0  29.9    2.2  2  LptD      LPS transport system D
    1.9e-29  102.2   0.6    4.9e-29  100.8   0.6    1.8  1  OstA      OstA-like protein


Domain annotation for each model (and alignments):
>> LptD  LPS transport system D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.0  29.9    7e-114  6.2e-110       2     387 .]     309     693 ..     308     693 .. 0.98
   2 !    5.4   1.4     0.001         9     317     370 ..     691     743 ..     690     768 .. 0.83

  Alignments for each domain:
  == domain 1  score: 368.0 bits;  conditional E-value: 7e-114
                 EEEEEEEEEEEECTTTEEEEEEEEEESSTTHHHHT--SSS-TT-SCEEEEEEEEEEETTEEEEEEEEEEEES...STTS---EEEEEEEEEEEEEEEET CS
        LptD   2 dRglvrakhqfrlndnwrlgvdynyvSDknYfrdfdsngglvsqtqLtqsgrlsYrnrnwdfslraqdyqllsnteesndtPyqrlPqldfnyykpdlv 100
                  R+l++++h++ +++ wrl+ dy++vSD++Yf+df+s++g +++ ++tq++++ Y n+n+d++++ +++q++   +++++++y + Pqld+nyy++d  
  CTQ26382.1 309 RRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVF---DRESSNSYSAEPQLDVNYYQNDVG 404
                 79**********************************************************************...99999******************9 PP

                 T.TEEEEEEEEEEEEEESSTTS-EEEEEEEEEEEEEEEE-SSEEEEEEEEEEEEEEEEE-CCHHHHCCCCH---SEEEEEEEEEEEEEEE-EEEEECCT CS
        LptD 101 egglefsfeaqavnferrdgtqptgsRlhlepeislpfstpyglltpelklrqtaYdldtnlqskerakgldldssvnrslpdfsvdsglpferdttlf 199
                   ++++ ++ q  +f ++++++p+++R+h+ep+i+lp+s+ +g+l++e+kl +t+Y++++ +  + +a+g+d+++sv+r++p+f+vd++++ferd++  
  CTQ26382.1 405 --PFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYN-AANGTDYKESVSRVMPQFKVDGKMVFERDLQE- 499
                 ..9*******************************************************7777765.56666************************999. PP

                 TCCEEEEEEEEEEEEEE----GCCS.-SS--B----SGGGC-S-SCSSSS----EEEEEEEEEEEEEETTTTEEEEEEEEEEEEESS----S-.---TT CS
        LptD 200 gksytqtlePraqylyvPyrdqnnlpnyDssslsfdytnlFrdnrfsGlDriedanqltlgvtsrlidknggferlrlsvGqsfyledrrvfl.nsgde 297
                   ++tqtlePr+qylyvPyrdq+ ++nyDs++l+ dyt+lFrd+++sGlDri++anq+t+g+tsr++d+++ +er+++svGq++y++++r+   n++ e
  CTQ26382.1 500 --GFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAA-VERFNISVGQIYYFTESRTGDdNINWE 595
                 ..9****************************************************************9999.9********************99**** PP

                 S-SSSCEEEEEEEEEEEECTTEEEEEEEEEETTTTEEEEEEEEEEEESSTTSEEEEEEEEE-HHCCCHCTTCCC........EEEEEEEEEEE-TTTE CS
        LptD 298 sglkrdksdlvaeldfrpndglslssriqydpytseferaevslsykpergksislgYryrredpeynrstnng........ikqiglsatlplavnw 387
                 +++++ +  +++++ +r+ d++ l++ iqyd++++++  ++ +++y+++++ +++l+Yry++ ++++++ + +         i+q+g++a++p+ ++w
  CTQ26382.1 596 NNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYStaaqykqgISQVGMTASWPIVDRW 693
                 ********************************************************************9988879*********************99 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.001
                 TTEEEEEEEEEETTTTEEEEEEEEEEEESSTTSEEEEEEEEE-HHCCCHCTTCC CS
        LptD 317 dglslssriqydpytseferaevslsykpergksislgYryrredpeynrstnn 370
                 d++s+ + + yd++t +  ++ ++++y++     i lgY  + + +++n ++ +
  CTQ26382.1 691 DRWSVVGAYYYDTNTRKAANQMLGVQYNSC-CYAIRLGYERKVNGWNSNDNGGE 743
                 689999***********************8.999************99987663 PP

>> OstA  OstA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.6   5.5e-33   4.9e-29       1     112 [.      53     194 ..      53     195 .. 0.99

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 5.5e-33
        OstA   1 eIeAdkaelddkkkvavftGnVvvtqGnltlkAdkvtvtqdkk...........................skkierleakgtatfrqkvdlvgeqirGk 72 
                 +I+Ad+a+ +++++ avftGnV++ qGn++l+Ad+v+++q+++                            k++++l++k+t++++ ++++vg+q+rG+
  CTQ26382.1  53 TINADHAKGNYPDN-AVFTGNVDINQGNSRLRADEVQLHQQQAagqaqpvrtvdalgnvhyddnqvilkgPKAWSNLNTKDTNVWQGDYQMVGRQGRGT 150
                 59************.************************************************************************************ PP

        OstA  73 AerieydskkeiivLtgnatlt.....qnsnsveGseitydikee 112
                 A+ ++ + ++++++L+ n+++t     ++ +sv Gse+++d++e+
  CTQ26382.1 151 ADLMKQRGENRYTILE-NGSFTsclpgSDTWSVVGSEVIHDREEQ 194
                 ****************.*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5321.65
//
Query:       CTQ26383.1  [L=275]
Description: DnaJ-like protein, membrane anchored [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-11   42.0   1.2    2.2e-10   40.7   1.2    1.6  1  TerB           Tellurite resistance protein TerB
    4.1e-10   39.7   0.1    8.2e-10   38.7   0.1    1.5  1  DnaJ           DnaJ domain
     0.0082   15.9   0.0       0.48   10.3   0.0    2.6  2  HTH_10         HTH DNA binding domain
  ------ inclusion threshold ------
      0.025   14.3   0.1      0.052   13.2   0.1    1.5  1  NADH_oxidored  MNLL subunit


Domain annotation for each model (and alignments):
>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   1.2   4.8e-14   2.2e-10      18     141 ..      45     170 ..      31     173 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 4.8e-14
        TerB  18 ktdaake.afalalaallaevakaDgqvsesErqafrellksrfglspeeakallelfeeaeeeavdleqftralkrkls..peqrraliealweiAlA 113
                 +++++++  f   ++ ++ ++ k+ g+v+e+ ++    l+ +r++l  +   a+ ++f + ++++  l +  r+l++ +    +  r ++e+  + A+A
  CTQ26383.1  45 ANQQERQsLFFSTTFEVMGHLTKSKGRVTEADIHVANVLM-DRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFgrFDLIRMFLEIQLQAAFA 142
                 444444568999999******************9887777.************************************9766677778888888888*** PP

        TerB 114 DGeldeaEdavlrrvaelLglspadfir 141
                 DGel+++E++vl  +a+ Lg+s a+f++
  CTQ26383.1 143 DGELHPNEREVLFVIADELGISRAQFDQ 170
                 **************************87 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.1   1.8e-13   8.2e-10       4      55 ..     213     271 ..     210     273 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.8e-13
                 HHHTSSTTG-HHHHHHHHHHHHHHHSTTTS......CCHH..HHHHHHHHHHHHHHHHTS CS
        DnaJ   4 eiLgvskdasedeIkkaYrklalkyHPDkn......pkdp..eaeekFkeineAyevLsd 55 
                 ++Lgv+++ +++++k+aYrkl+ ++HPDk       p+     a++k +ei++A+e  ++
  CTQ26383.1 213 NVLGVKPTDDAATVKRAYRKLMNEHHPDKLvakglpPE-MmeMAKQKAQEIQKAWELIKE 271
                 69**************************8777667533.2468999**********8865 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00011      0.48      28      46 ..     156     174 ..     136     177 .. 0.82
   2 ?    2.8   0.0     0.023     1e+02      21      52 ..     203     234 ..     186     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
      HTH_10  28 eLAkelGIskstlsehLrk 46 
                  +A+elGIs++ + + Lr 
  CTQ26383.1 156 VIADELGISRAQFDQFLRM 174
                 79***************96 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.023
      HTH_10  21 PRrvtlkeLAkelGIskstlsehLrkaeskli 52 
                  R  tl++  + lG+++++    +++a +kl+
  CTQ26383.1 203 QRGPTLEDACNVLGVKPTDDAATVKRAYRKLM 234
                 567788888899*******************8 PP

>> NADH_oxidored  MNLL subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.2e-05     0.052      18      41 ..      24      47 ..      20      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
                   HHHHHHHHHHHHHHHHHHGGGTTT CS
  NADH_oxidored 18 PlGFvvGwyLDkkedekltaFrnK 41
                    lGF+vG  +D+ +  +l  F+n 
     CTQ26383.1 24 VLGFLVGHMFDRARSRRLNLFANQ 47
                   59*******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2021.82
//
Query:       CTQ26384.1  [L=232]
Description: Transcriptional regulatory protein CitB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-17   63.4   0.0    3.1e-17   62.7   0.0    1.4  1  Response_reg  Response regulator receiver domain
    1.4e-05   25.3   0.0    2.9e-05   24.3   0.0    1.5  1  CitT          Transcriptional regulator
     0.0018   18.1   0.0     0.0043   16.8   0.0    1.7  1  HTH_IclR      IclR helix-turn-helix domain
     0.0045   17.1   0.1      0.019   15.1   0.1    2.1  1  AbiEi_4       Transcriptional regulator, AbiEi antitoxin
  ------ inclusion threshold ------
      0.095   12.7   0.0       0.18   11.7   0.0    1.4  1  DUF977        Bacterial protein of unknown function (DUF977)


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   8.7e-21   3.1e-17       1     111 [.       8     119 ..       8     120 .. 0.95

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 8.7e-21
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   vli++D+  +++l ++l++ +  ++  + a++ ++a +ll++  ++l+llD  +p+ +G++l++      +++ vi++ta+s++e+  +a++ ga+d
    CTQ26384.1   8 VLIIEDESELARLHAELVQkHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFD 104
                   8******************667886666**************************************9999*************************** PP

                   EEESSG-HHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkal 111
                   ++ Kp++ ++L + l
    CTQ26384.1 105 YILKPVSWKRLSQSL 119
                   *******99998876 PP

>> CitT  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0     8e-09   2.9e-05       1      29 [.     135     162 ..     135     162 .. 0.96

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 8e-09
        CitT   1 vdQrdVDrLFqraatgqpasgrLPKGIDk 29 
                 vdQ++VD+L+q +a+  +  ++  KGI++
  CTQ26384.1 135 VDQQNVDSLYQLQAKNYRV-DSGSKGIEE 162
                 8******************.*******86 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.2e-06    0.0043      20      49 ..     181     210 ..     162     212 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.2e-06
                 BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  20 tlselArrtglpkStvhRlLqtLvelGyve 49 
                 ++ e+  ++gl+k+t++R+L   ve G++e
  CTQ26384.1 181 SVDEVVSAAGLSKTTARRYLEHGVETGFLE 210
                 889*******************99999998 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   5.2e-06     0.019       9      36 ..     167     203 ..     162     204 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.2e-06
     AbiEi_4   9 rqvGlfttrel........ea.aGispsalrrLvrkG 36 
                  ++Glf++re+           aG+s ++ rr++++G
  CTQ26384.1 167 LVQGLFSDREAhcfsvdevVSaAGLSKTTARRYLEHG 203
                 5666777777777777777666************999 PP

>> DUF977  Bacterial protein of unknown function (DUF977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.1e-05      0.18      22      63 ..     175     216 ..     157     231 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.1e-05
      DUF977  22 kkneritisdleritGvgrtsvrkylvdvlerGdlirpGkyG 63 
                 ++   + +++++ + G  +t++r+yl   +e G l  +  yG
  CTQ26384.1 175 REAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYG 216
                 455668899***********************9887665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1849.50
//
Query:       CTQ26385.1  [L=541]
Description: Sensor histidine kinase CitA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-19   70.0   0.6    4.1e-19   69.1   0.6    1.4  1  sCache_3_2   Single cache domain 3
      2e-17   63.7   0.0    4.2e-17   62.7   0.0    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    5.8e-11   42.2   0.0    1.8e-10   40.6   0.0    1.9  1  HATPase_c_5  GHKL domain
    1.2e-08   34.5   1.7    3.3e-08   33.1   1.7    1.7  1  SPOB_a       Sensor_kinase_SpoOB-type, alpha-helical domain
    2.8e-06   27.2   0.0    4.8e-06   26.4   0.0    1.3  1  dCache_3     Double sensory domain of two-component sensor ki
    4.9e-06   26.5   0.0    1.3e-05   25.2   0.0    1.7  1  HATPase_c_2  Histidine kinase-like ATPase domain
    1.9e-05   24.9   0.0       0.15   12.3   0.0    2.9  2  PAS_4        PAS fold
    2.8e-05   24.1   0.0    0.00011   22.2   0.0    2.1  2  PAS          PAS fold
     0.0014   18.8   0.4     0.0079   16.4   0.0    2.5  1  PAS_7        PAS fold
     0.0023   17.9   0.0     0.0058   16.6   0.0    1.7  1  PAS_8        PAS domain
     0.0054   16.5   0.2      0.014   15.2   0.0    1.7  2  dCache_1     Cache domain
     0.0055   16.9   0.0      0.038   14.2   0.0    2.3  2  PAS_9        PAS domain
  ------ inclusion threshold ------
      0.031   14.7   0.2      0.083   13.4   0.2    1.8  1  CBS          CBS domain
      0.033   13.9   1.3      0.066   13.0   0.3    2.0  2  XPC-binding  XPC-binding domain
       0.15   12.0   0.5       0.28   11.1   0.1    1.6  2  Rsd_AlgQ     Regulator of RNA polymerase sigma(70) subunit, R
        3.7    7.7   6.4         15    5.6   0.5    2.4  2  TssO         Type VI secretion system, TssO


Domain annotation for each model (and alignments):
>> sCache_3_2  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.6   3.6e-22   4.1e-19       4     130 ..      34     159 ..      31     163 .. 0.89

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 3.6e-22
  sCache_3_2   4 rdlaealeeralalatsvagsrivrvaltdrapesglqalvddvrritgvdyvvitDeegrvlahp.dpaevgrklsgpataaalkagrayvgtvtgtl 101
                 r+l ++   ra+  a+++a  +  r+ +++ ++ +++qa  ++++++++++++vi D++g  l+h+ +p+ vg++l  +++++a+ +g++ + +  g+l
  CTQ26385.1  34 RQLYQEMSARAKIQAEEIALMPNLRQQVSR-HDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSvHPEWVGTRL-VGGDNQAVLEGKSITTIRKGGL 130
                 667777788888888888888887776666.7788999999************************62777******.99******************** PP

  sCache_3_2 102 gpslrvklPvfdadgrviGivsvGvkqde 130
                 g slr k+P++d+ grviGivsvG+ ++ 
  CTQ26385.1 131 GVSLRSKTPIVDDAGRVIGIVSVGYLTSY 159
                 ************************99875 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   3.8e-20   4.2e-17       4     111 ..     421     528 ..     419     529 .. 0.81

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 3.8e-20
                 HHHHHHHHHHHHHHHHHHSTTT....EEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   4 krLrqiisnlvdNavkfatkag....eieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                 + L  ii nl+dNa+++++ a+     +ev i+ +  +l i+v D G Gi +++++++fe+ ++    + + g +G+Gl++ + +v++ gG+i+v ++ 
  CTQ26385.1 421 SELISIIGNLLDNAIEATQRAElphePVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVT----TKTRGDHGIGLYLIEHYVTQAGGTIEVADNA 515
                 67899***********9442223333444444444678**********************6555....36679***********8888*******9999 PP

                 TTEEEEEEEEESS CS
   HATPase_c  99 grGttftftlple 111
                  rGt ft+++p +
  CTQ26385.1 516 PRGTIFTLFIPAD 528
                 ********99975 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   1.6e-13   1.8e-10       4      89 ..     421     513 ..     418     525 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 1.6e-13
  HATPase_c_5   4 ldlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg.....ekkkle...sskskkeehGiGlksireivkkykgnlsiea 89 
                   +l++i+gnlLdNAiea ++ e  ++ +++ ++ + + lii++     g     + ++++    +++++++hGiGl  i++ v + +g++++  
   CTQ26385.1 421 SELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGirpdiR-ERIFergVTTKTRGDHGIGLYLIEHYVTQAGGTIEVAD 513
                  689*****************9998999******************9666444331.22222443355699******************999765 PP

>> SPOB_a  Sensor_kinase_SpoOB-type, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   1.7   2.9e-11   3.3e-08       5      56 ..     321     372 ..     318     377 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2.9e-11
      SPOB_a   5 eikelkeliklLrsqRHDflNhLQvIsGylqLgkydkaeeyieevvkelkee 56 
                 +++++k +++ Lr  RH+ lN++  +sG+l++g yd+a  yi+  +++++e 
  CTQ26385.1 321 QLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQEL 372
                 78899*******************************************9986 PP

>> dCache_3  Double sensory domain of two-component sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   4.3e-09   4.8e-06      17     140 ..      35     155 ..      28     168 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 4.3e-09
    dCache_3  17 nlleqeedqllallelvasspgvaeaisegdreqlerlldsiwndlgleqivlldadgtvilrlhepskfgdslslfrllirsvlqgeealagievgda 115
                 +l ++ +++++  +e +a +p++++  s++d + +    + i++  +++ iv+ d++g  ++ ++ p++ g+ l   ++   ++  +++++++i+ g  
  CTQ26385.1  35 QLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDN---QAVLEGKSITTIRKGGL 130
                 55667789999********************************************************************...77778889999999999 PP

    dCache_3 116 gctfrvvaPvl.aegeqvvGavvfgv 140
                 g ++r   P+   +g +v+G+v++g+
  CTQ26385.1 131 GVSLRSKTPIVdDAG-RVIGIVSVGY 155
                 9**********6666.7*******98 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.1e-08   1.3e-05      40     111 ..     431     504 ..     419     524 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.1e-08
  HATPase_c_2  40 ctNavehayleap.egpvevrlesdeealtvevaDsGpgfdpe...tlpdpteeepkeslkegGrGlalikglvDe 111
                  + Na+e+ ++ +  ++pvev ++ ++++l +evaD+G g +p     + +++++  +  +  +G+Gl+li+++v +
   CTQ26385.1 431 LDNAIEATQRAELpHEPVEVLIQLNARELIIEVADRGVGIRPDireRIFERGVT--TKTRGDHGIGLYLIEHYVTQ 504
                  56999999998877*************************666511234444444..599*************9976 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0012       1.3      37     100 ..      92     152 ..      88     157 .. 0.89
   2 !   12.3   0.0   0.00013      0.15       3      47 ..     218     264 ..     216     281 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0012
       PAS_4  37 Gktla.ellpeedaarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGevigvlv 100
                 G +l+ +++pe +++rl   +++++ ++++i++       g+  + + +++P+ d+ G+vig++ 
  CTQ26385.1  92 GVHLFhSVHPEWVGTRLVGGDNQAVLEGKSITTIR----KGGLGVSLRSKTPIVDDAGRVIGIVS 152
                 5556658999999*******************999....8999*******************985 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00013
       PAS_4   3 slpdalavldpdgrvlyaNaaaaelfga..ppeellGktlaellpee 47 
                 s+ ++++v+d++ r++ +N aa++l+g+  p+ +l+G++  ++ +++
  CTQ26385.1 218 SIFEGVIVIDRQRRIEVINHAARSLLGLsqPARQLRGQSIDSVISPQ 264
                 56679*******************87752278999999998877765 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.9   6.6e+03      94     109 ..     138     153 ..     136     154 .. 0.83
   2 !   22.2   0.0   9.7e-08   0.00011       4      51 ..     213     262 ..     210     281 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.9
                 EEEEETTEEEEEEEEE CS
         PAS  94 spvrdaggeilgflgv 109
                 +p++d  g+++g++ v
  CTQ26385.1 138 TPIVDDAGRVIGIVSV 153
                 7999999999999865 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 9.7e-08
                 HHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTH..HHCTTSBGGGGBS CS
         PAS   4 raileslpdpifvvDedgrilyvNaaaeellGlsr..eevlgkslldlih 51 
                 +a++es+ ++++v+D++ ri  +N+aa++llGls+   ++ g+s+  +i+
  CTQ26385.1 213 KAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQpaRQLRGQSIDSVIS 262
                 699*******************************9988999998866665 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     7e-06    0.0079       2      45 ..     217     261 ..     216     314 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7e-06
       PAS_7   2 enmsqGisvfDadlrLvawNrrylelldlpeelvq.vgvpleell 45 
                 e++ +G++v+D++ r+ ++N+  ++ll+l++   q  g ++++++
  CTQ26385.1 217 ESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQlRGQSIDSVI 261
                 78899************************8766541355566666 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.1e-06    0.0058       4      46 ..     213     258 ..     210     277 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.1e-06
       PAS_8   4 ralfesspdgiavvdlgdrivdvNqaalellGys...adlkgellg 46 
                 +a++es+ +g++v+d+++ri  +N aa  llG+s    +l+g+ ++
  CTQ26385.1 213 KAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSqpaRQLRGQSID 258
                 67889999*******989****************554444444443 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-05     0.014      28     166 ..      43     163 ..      31     171 .. 0.81
   2 ?   -2.9   0.1       4.2   4.7e+03      21      45 ..     324     349 ..     296     377 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
    dCache_1  28 slenlaetlasnpslqdlleepnraneasreslqallksilksnpdisgvylvdadGq.viassdpssppnlegtddpadrdwykealaggggkpvisd 125
                 +++ +ae +a +p+l++ ++ +      +++++qa++++i+++ +d s + + d++G  +++s  p++ +   +++d       +++l+g++ ++    
  CTQ26385.1  43 RAKIQAEEIALMPNLRQQVSRH------DPQAIQAFMQQIAAH-SDASFIVIGDRQGVhLFHSVHPEWVGTRLVGGDN------QAVLEGKS-IT---- 123
                 566799***********99876......79**********875.589**********956778888888777667777......78888884.33.... PP

    dCache_1 126 pyvdqtgg.kpvitiavpiyddsgkfiGvlaadldldnlqdl 166
                   + ++ g    +   +pi dd g++iG++ + +  ++l+++
  CTQ26385.1 124 -TIRKG-GlGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSI 163
                 .33456.7569999999*************999999999875 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.2
    dCache_1  21 niedvldsle.nlaetlasnpslqdl 45 
                 ++++++d+l+    e+l+++ +l +l
  CTQ26385.1 324 QVKRYVDNLRiMRHEQLNRMTTLSGL 349
                 34444444332222333333334444 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.4   1.6e+03      79      97 ..     134     152 ..      65     154 .. 0.74
   2 !   14.2   0.0   3.4e-05     0.038       2     103 ..     221     313 ..     221     314 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.4
       PAS_9  79 lltaspvkdddgelvgiiv 97 
                 l + +p+ dd g+++gi++
  CTQ26385.1 134 LRSKTPIVDDAGRVIGIVS 152
                 3456899999999998665 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.4e-05
       PAS_9   2 dgilidnpdgrilyaNeaalrllG..yspeevlgksitdlfvtdpeanerlraaleqgrkkerevevvlirkngetfwvlltaspvkdddgelvgiivi 98 
                 +g+++++ + ri+ +N aa+ llG  + ++++ g+si+ ++          + ++ +g+  er+   +l r n+ t++  ++ ++++  +++l+g++++
  CTQ26385.1 221 EGVIVIDRQRRIEVINHAARSLLGlsQPARQLRGQSIDSVI--------SPQPFFASGDMLERDTHDELCRFNQLTVL--ASRVRIM-LENTLQGWVIT 308
                 57888779999*************64449************........66677777776678888888888874444..3333332.37789999999 PP

       PAS_9  99 lrDit 103
                 +rD  
  CTQ26385.1 309 FRDRN 313
                 99976 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   7.4e-05     0.083      33      55 ..     138     160 ..     124     162 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.4e-05
                 EEEEETTTBEEEEEEHHHHHHHH CS
         CBS  33 lPVVdedgklvGivtlrDllral 55 
                  P+Vd+ g+++Giv+   l ++l
  CTQ26385.1 138 TPIVDDAGRVIGIVSVGYLTSYL 160
                 59*************99888887 PP

>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   5.9e-05     0.066      12      36 ..      56      81 ..      51      94 .. 0.77
   2 ?   -2.8   0.0         5   5.6e+03      17      53 ..     362     376 ..     360     379 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.9e-05
  XPC-binding 12 qlRqlv.qqnPqlLqplLqqlaqsnP 36
                 +lRq v +++Pq++q+++qq+a++  
   CTQ26385.1 56 NLRQQVsRHDPQAIQAFMQQIAAHSD 81
                 6887773679************9865 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5
  XPC-binding  17 vqqnPqlLqplLqqlaqsnPqllqlIqqnqeeFlqlL 53 
                  +q++ +  q+lL                      +++
   CTQ26385.1 362 IQAQSEHAQELL----------------------DFI 376
                  455555555555......................444 PP

>> Rsd_AlgQ  Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.3   5.9e+03      42      57 ..      57      72 ..      29      79 .. 0.48
   2 ?   11.1   0.1   0.00025      0.28       4      70 ..     314     380 ..     312     399 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.3
    Rsd_AlgQ 42 kkeekelpseealqef 57
                 +++ ++ + +a+q+f
  CTQ26385.1 57 LRQQVSRHDPQAIQAF 72
                2333444444444444 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00025
    Rsd_AlgQ   4 klekakerwggvselidrwLeeRqqllvaycklaglkp.kkeekelpseealqefcqlLvDYvSaGhF 70 
                 +++ +++++ +v++ +d++   R++ l + ++l+gl +  + +++    +a +e +q+L+D++S+ hF
  CTQ26385.1 314 EINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHmGHYDEAIRYIQAQSEHAQELLDFISS-HF 380
                 6778999*****************************987777888888899999*********97.66 PP

>> TssO  Type VI secretion system, TssO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.5     0.014        15      10      51 ..      10      50 ..       5      85 .. 0.55
   2 ?    4.5   0.9      0.03        33      10      63 ..     165     218 ..     161     228 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.014
        TssO 10 flyflllFlvtvlllflivffffkssplqekeil.lkelerkk 51
                f+ +++ F+v+ + l+  ++++f  s++  +e+  ++++++++
  CTQ26385.1 10 FISLVAFFSVLFIALG--IYYYFDASRQLYQEMSaRAKIQAEE 50
                5556666666666666..5555555555555555444444443 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.03
        TssO  10 flyflllFlvtvlllflivffffkssplqekeillkelerkkkfeekqkelkkk 63 
                   +++ +F+++vlll  +  f+++ ++  +k+i   e  ++  +  +qk +++ 
  CTQ26385.1 165 LTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMES 218
                 67999******9999855555555566666666666666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 4114.98
//
Query:       CTQ26386.1  [L=454]
Description: Citrate/malate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-140  468.5  34.1   1.8e-140  468.3  34.1    1.0  1  2HCT      2-hydroxycarboxylate transporter family


Domain annotation for each model (and alignments):
>> 2HCT  2-hydroxycarboxylate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  468.3  34.1    1e-144  1.8e-140       2     414 ..      36     445 ..      35     447 .. 0.98

  Alignments for each domain:
  == domain 1  score: 468.3 bits;  conditional E-value: 1e-144
        2HCT   2 lglplplfllllavlllalltgklpkdligalavllvlGillgeiGkriPilksylGGgailallvpsllvylgllpeevvkavttfmkesgfldlyia 100
                 +++plplfll+  +++l  l gklp+d+++++a+l+++G+ +ge Gkr+P+l + lG++ai+a+++ps+lv++gllp+ v++++t+f+k++++l+lyi+
  CTQ26386.1  36 GIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGK-LGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYIC 133
                 789*********98888888**********************************.******************************************** PP

        2HCT 101 aLivgSiLgmdrklLikafvryipliliglvlalllgvlvGlllGlsakeallyivlPimaGGvgaGavpLseiyssvlgkdaeellsqlipavllgni 199
                 ++ivgSi++m+r++Li++f++++ ++l+g v+++l+g+ vG+llG+++ +++++ivlPimaGGvg+Ga+pLs++y++++++++  +l++++p+v+lg++
  CTQ26386.1 134 CIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSL 232
                 *************************************************************************************************** PP

        2HCT 200 vaivvagllkklgkkkpsltGnGkllkkkeeee.kakekkekekkidvkklgaglllalslyllgvllekligvkipalvlmiilvvivkllnlipeel 297
                 +aiv++g+l++lgk+ p+ltG+G+l++++++e+   +e++  + k+dv +l++g+lla+ ly++g+l +klig  +pa+v m++l+v++kl+n+++ +l
  CTQ26386.1 233 TAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETrSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIG--LPAPVGMLFLAVLLKLANVVSPRL 329
                 *****************************8888788999999*****************************88..************************ PP

        2HCT 298 eegakqlykfisknltlallvgiGvaltdlkeliaaltvqyviiilvtVvgavlgaalvgkllgfypieaaitagLcmanmGGtGdvavLsAanrmeLm 396
                 +eg++++ykf+ +++t+++l+++Gva+t+++el++a+t++++++i++tV ++v++++lvgk +g++pi+ ai+++ c++++GGtGdva+L+A+nrm+Lm
  CTQ26386.1 330 QEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSC-CQSGQGGTGDVAILTAGNRMSLM 427
                 ***************************************************************************.*********************** PP

        2HCT 397 pFAqistRlGGAlvvila 414
                 pFAqi+tR+GGA+ v l+
  CTQ26386.1 428 PFAQIATRIGGAINVSLG 445
                 **************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3789.69
//
Query:       CTQ26387.1  [L=179]
Description: Phosphoribosyl-dephospho-CoA transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-56  188.2   0.0      1e-55  188.0   0.0    1.0  1  CitX      Apo-citrate lyase phosphoribosyl-dephospho-CoA tran


Domain annotation for each model (and alignments):
>> CitX  Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.0   0.0   5.6e-60     1e-55       1     164 [.      11     174 ..      11     175 .. 0.99

  Alignments for each domain:
  == domain 1  score: 188.0 bits;  conditional E-value: 5.6e-60
        CitX   1 vsleelLearekRaarqkellkkykktlvsltlnipGpvknsellekvfeegiealeeklkkaeikilekevleektGpeaflvvdadaeevKklmiel 99 
                 vs+++lL+a+e+Raarq ++l++y+++++sltl++pG+vk+s ++++++  +++a+++ l k+++++l+++vl+  tGpea+++v+++a+e+K+++ +l
  CTQ26387.1  11 VSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTL 109
                 57899********************************************************************************************** PP

        CitX 100 EeshplGrlfDlDVldadgkkisRkdlglkpRkCllCeepakeCarsrrHsveelqakiekllee 164
                 E+shplGrl+D+DV+++++  + R++lg ++R+CllC+epa++CarsrrH+++ ++a++e+++++
  CTQ26387.1 110 EQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDA 174
                 **************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1493.20
//
Query:       CTQ26388.1  [L=219]
Description: pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-30  105.8   0.0    2.8e-30  105.5   0.0    1.1  1  PseudoU_synth_2  RNA pseudouridylate synthase
  ------ inclusion threshold ------
       0.14   12.5   0.2        0.3   11.4   0.0    1.6  2  DinI             DinI-like family


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.0   3.1e-34   2.8e-30       1     159 [.      22     169 ..      22     170 .. 0.90

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 3.1e-34
  PseudoU_synth_2   1 dlvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeega 94 
                      +++vvnKP+g+ + p+     e++k+ + t  r +++  +   vhRLD atsG++++A +++a ++l ++f+er+ +K+Y+a v g+p ++eg 
       CTQ26388.1  22 HIMVVNKPSGLLSVPGR---LEEHKDSVMT--RIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGL 110
                      689**************...3333333333..33345578899*************************************************** PP

  PseudoU_synth_2  95 ikkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                      ++ ++    +   ++++k+ +++gk a+t ++vl+++    + +++ v+l+++tGr hQ+Rvh+ 
       CTQ26388.1 111 VDLPLIC--DWPNRPKQKVCYETGKAAQTEYEVLEYA----EDNTARVRLKPITGRSHQLRVHML 169
                      *******..8***************************....99********************96 PP

>> DinI  DinI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.4e-05       0.3      19      61 ..      17      59 ..      14      59 .. 0.94
   2 ?   -3.2   0.2       1.3   1.2e+04       8      18 ..      79      89 ..      76      95 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.4e-05
                H-SS-EEEEEEESS-EEEEES--HHHHHHHHHHHHHHHHTHHH CS
        DinI 19 vfPdaevrvrkasanglsveGaskedkeriseiLQetwesADd 61
                ++ d ++ v+   +  lsv G  +e k+ ++  +Q ++ +A++
  CTQ26388.1 17 LYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAES 59
                59999*********************************99975 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.3
                HHHHHHHHHHH CS
        DinI  8 leaELskRiqe 18
                 e EL+++ +e
  CTQ26388.1 79 AERELKRQFRE 89
                56778777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1663.73
//
Query:       CTQ26389.1  [L=968]
Description: RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.3e-157  524.4   1.0     2e-157  523.8   1.0    1.3  1  RapA_C        RNA polymerase recycling family C-terminal
    1.3e-26   92.5   0.0    3.3e-26   91.2   0.0    1.7  1  Tudor_RapA    RapA N-terminal Tudor like domain
    1.5e-23   82.5   0.0    3.1e-23   81.4   0.0    1.6  1  Tudor_1_RapA  RapA N-terminal Tudor like domain 1
    4.9e-20   71.5   0.0    8.3e-20   70.8   0.0    1.2  1  SNF2_N        SNF2 family N-terminal domain
      8e-17   61.6   0.0    1.9e-15   57.2   0.0    2.6  2  Helicase_C    Helicase conserved C-terminal domain
      2e-10   40.9   0.0      5e-10   39.6   0.0    1.7  2  ResIII        Type III restriction enzyme, res subunit
    1.5e-05   24.8   0.0    5.7e-05   23.0   0.0    1.9  1  DEAD          DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.041   12.8   0.0       0.18   10.6   0.0    1.9  1  AAA_34        P-loop containing NTP hydrolase pore-1
       0.39   10.9   2.3          4    7.6   2.3    2.6  1  DUF1525       Protein of unknown function (DUF1525)


Domain annotation for each model (and alignments):
>> RapA_C  RNA polymerase recycling family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  523.8   1.0    1e-160    2e-157       1     360 []     605     965 ..     605     965 .. 0.99

  Alignments for each domain:
  == domain 1  score: 523.8 bits;  conditional E-value: 1e-160
                 -EEEEEEEETTSHHHHHHHHHHHHH-TTTS--TTSHHHHTTSHHHHHHHHHS-.--STTHHHHHHHHHHHHHHHHHSTTT--HHHHHHTT-SHHHHHHH CS
      RapA_C   1 diqihVPylegsaqevllrWYhegLnafeetcpagqavyeefkeeLeellake.deealeeLiaetraerealkaeleqGRDrLLElnScrpekaeelv 98 
                 diqihVPyle++aq+vl+rWYhegL+afe+tcp+g++vy+++++eL ++la++ +++ +++Li+ +r++++alka+leqGRDrLLE++S+++eka++l+
  CTQ26389.1 605 DIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPeSTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALA 703
                 7***************************************************65999****************************************** PP

                 HHHHCCC--TTHHHHCHHHHHHHTEEEE--SSSSEEEEE-STT--TT-S--S--EE-S-HHHHTTS-S---STTSTHHHHHHHHHTT--SSSSB--S-S CS
      RapA_C  99 eaiaeedndteleeflerlfdaigveqedkseksivlrpsehmlveafpglpedGltvTfdRetAlareDvqFltwehPlvrgaldlilsselGnaava 197
                 e+i+e+d+dt+l +f  +lfd++g++q+d++e+ ivl+ps+hmlv++fpglpedG+t+Tf+R+ Al+reD+qF+twehPl+r++ldlils+++G+++++
  CTQ26389.1 704 ESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTIS 802
                 *************************************************************************************************** PP

                 -SSS-S--S-----B---B----S-GGG-GGGT--------B-SSSS-B--S-STTTSTT-------STTSSTTSSS-SHHHHTTTTTTTTSSSHHHHH CS
      RapA_C 198 llknkalpagtlllElifvveaqapkalqlerfLpptpirllldekgkdlsekvsfeslnkqlkkvkkklarklvkakrkeiekllkkaeklaeeqaee 296
                 llknkalp gtlllEli+vveaqapk+lql+rfLp tp+r+lld++g++l+++v+fes+n+ql++v++++ +klv+a++++++++l+++e++++++a+ 
  CTQ26389.1 803 LLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQG 901
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHTHHHHTHHHH--S--SSSHHHHTTTHHHHTTTTT----B----B-XXX CS
      RapA_C 297 lieeakaraeqelsaEleRLeaLkavNpnirdeeiealeeqreellealdqaqlrLdAiRlivv 360
                 li++a+++a+++l+aEl+RLeaLkavNpnird+e++a+e++r+++ +al+qa +rLdA+Rlivv
  CTQ26389.1 902 LIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVV 965
                 **************************************************************96 PP

>> Tudor_RapA  RapA N-terminal Tudor like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0   1.7e-29   3.3e-26       1      63 []      55     118 ..      55     118 .. 0.99

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 1.7e-29
  Tudor_RapA   1 FnvGDeiesqegwkltVeeveeenGlliYlgkredtgee.vslpEteLdsfiqfnkPqdRLfaG 63 
                 Fn+GD+i+s+egw+l V++v+eenGll Y+g+r dt+e+ v+l+E+ Lds++ f+kPqdRLfaG
  CTQ26389.1  55 FNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEAnVTLREVLLDSKLVFSKPQDRLFAG 118
                 9**************************************************************8 PP

>> Tudor_1_RapA  RapA N-terminal Tudor like domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   1.6e-26   3.1e-23       1      51 []       3      53 ..       3      53 .. 0.99

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 1.6e-26
  Tudor_1_RapA  1 FavGQRWiSetEseLGLGivvevdgrtVtilFpaageeRtYatanApLtRv 51
                  F++GQRWiS+tEseLGLG+vv++d+r+Vt+lFpa+ge+R Y+++++p+tRv
    CTQ26389.1  3 FTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRV 53
                  99************************************************9 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   4.2e-23   8.3e-20      59     293 ..     174     441 ..     152     465 .. 0.86

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 4.2e-23
                 EE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  59 iLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvittY 157
                 +LaDe GLGKT+++  ++++q    + +            +LivvP +l +qW  e+ r   + +lr    ++++    + ++ a + +++ + vi ++
  CTQ26389.1 174 LLADEVGLGKTIEAGMILHQQLLSGAAE-----------RVLIVVPETLQHQWLVEMLR---RFNLRFSLFDDER--YAEAQHDAYNPFETEQLVICSL 256
                 8*************88888555544443...........49************999865...5566667777775..45556778999*********** PP

                 HHHHHHT......TTS-S-S-SEEEES-GGGT--T...TSHHHHHHHH--..-S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HH..HHHHHTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
      SNF2_N 158 dvlsreaelqkkrsvlkqvewkrvvlDEghtlkns...tskaaeavskLs..tsnrwiltGTPiqnsledlygLlkfLreepfgekq..tfdkllqrpi 249
                 d ++r +   ++ ++l + ew+ +v+DE+h l  s    s+ ++a+++L+      ++lt+TP q ++e  ++ l +L ++ f +++  + +++ +rp+
  CTQ26389.1 257 DFVRRSK---QRLEHLCDAEWDLMVVDEAHHLVWSeeaPSREYQAIEQLAerVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEqfVEEQQNYRPV 352
                 ****999...799******************988855569999*****9944456899***************************65377789999**9 PP

                 H........................................HHHHHHHHHHHTT-S......TTEE---GGGT--S---EEEEEEEEE-- CS
                 x........................................xxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 250 e........................................aqaekgrsrLlqllq......rlmlrrakkdveknlPpkteeiiflkls 293
                 +                                        + a++ r++L+++l       r++ r + + v k +P+++ ++i+l+l 
  CTQ26389.1 353 AdavalllagnklsdselntlgdligeqdiepllqaansdrEDAQAARQELISMLMdrhgtsRVLFRNTRNGV-KGFPKRELHTIRLPLP 441
                 9**********999999999999999999999999999999889999999999998666666799999*9999.************9985 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.25   4.9e+02      12      76 ..     196     259 ..     189     264 .. 0.77
   2 !   57.2   0.0   9.5e-19   1.9e-15       7     111 .]     495     601 ..     490     601 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.25
                 HTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGG CS
  Helicase_C  12 leeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdva 76 
                 l+   +++li+v+ + + +  v++l +++++++  ++ e  ++ + ++ + f + e+ v+ + d +
  CTQ26389.1 196 LSGAAERVLIVVPETLQHQWlVEML-RRFNLRFSLFDDERYAEAQHDAYNPF-ETEQLVICSLDFV 259
                 5677889999999998775545555.899***********************.5566677777665 PP

  == domain 2  score: 57.2 bits;  conditional E-value: 9.5e-19
                 HHHHHHTTTTSEEEEEESSHH.HHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHH CS
  Helicase_C   7 lellkleeeggkilifvntid.rlek.vklllekkgikvavlhgelpqnereeileqfn..kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyi 101
                 + +l ++++ +k+l+++ +    l +  ++l+e++gi++av+h  ++  er+++ + f   +   +vL+++ ++++G +++ ++++++fdlp+n++ + 
  CTQ26389.1 495 MGYL-TSHRSQKVLVICAKAAtAL-QlEQVLREREGIRAAVFHEGMSIIERDRAAAWFAeeDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLE 591
                 5555.6789999999999999533.3369999**************************95333355********************************* PP

                 HHHTTSSSTT CS
  Helicase_C 102 qriGRtgRag 111
                 qriGR  R+g
  CTQ26389.1 592 QRIGRLDRIG 601
                 ******9986 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   2.5e-13     5e-10      22     170 ..     168     317 ..     114     318 .. 0.73
   2 ?   -3.7   0.0       5.1     1e+04      49      73 ..     498     522 ..     495     560 .. 0.71

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 2.5e-13
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHH....HHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHH CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtl....eefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqslda 116
                 ++  r+l++ + G GKT+ a  +  + l +g  e++l++vp+ +l  q+l    ++f+  +s  ++e   + + d +++     ++ ++++ + + + +
  CTQ26389.1 168 RHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPE-TLQHQWLvemlRRFNLRFSLFDDERYAEAQHDAYNP----FETEQLVICSLDFVRR 261
                 4556999*************88888888889999*******7.588888844444444444433333444555555555....6778888888888888 PP

                 TH........HHHTTT-SEEEEETGGGTTS.T.....TTHHHHHT---.SEEEEEESS-S CS
      ResIII 117 dseeeeeeseellrdrfdviiiDEaHrlgakk.....swreilekfke.avllglTATpe 170
                 ++    +  e+l + + d++++DEaH+l  ++     ++++i +  ++   +l lTATpe
  CTQ26389.1 262 SK----QRLEHLCDAEWDLMVVDEAHHLVWSEeapsrEYQAIEQLAERvPGILLLTATPE 317
                 88....8899999999*************9845667799999777655688999*****8 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.1
                 -S.....-EEEEESSHHHHHHHHHH CS
      ResIII  49 lkkgkeekflflvprkslleqtlee 73 
                 l++++ +k+l+++ + +   q+++ 
  CTQ26389.1 498 LTSHRSQKVLVICAKAATALQLEQV 522
                 5566778999998887766666554 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.9e-08   5.7e-05      16     170 ..     172     317 ..     156     321 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.9e-08
                 EEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH..TT.......CSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xx.......xxxxxxxx RF
        DEAD  16 dvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld..ng.......vdivvgtp 105
                  vl+a e+G GKT  + + + q++++     + ++liv+P   L +q l ++ ++++   lr +l+  +  a+ q+++ +  ++       +d+v    
  CTQ26389.1 172 RVLLADEVGLGKTIEAGMILHQQLLS---GAAERVLIVVPE-TLQHQWLVEMLRRFN---LRFSLFDDERYAEAQHDAYNpfETeqlvicsLDFVRRSK 263
                 68999*******************86...7778*******6.588888888877777...677766665555555555532233011111144444444 PP

                 HHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 106 grlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 +rl +l+        +  ++V+DEa+ l  ++  +  +r  ++++q  ++ +    +++l+AT++
  CTQ26389.1 264 QRLEHLC------DAEWDLMVVDEAHHLVWSEEAP--SREYQAIEQLAERVP---GILLLTATPE 317
                 4444444......356799********98773332..232355555556555...49******86 PP

>> AAA_34  P-loop containing NTP hydrolase pore-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.3e-05      0.18      64     255 ..     174     348 ..     154     360 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.3e-05
      AAA_34  64 llGDgaGvGkgrqiagiilenllqgrkkavwvsvsedLkeDaerDlkdigaseievvalnklkegkkik..eseelkeGvlFvtYstliseskkkkksr 160
                 ll D+ G+Gk+ + + i++++ll+g    v + v e+L++    ++  ++  +++    ++ +++++++   +   +e  + +    ++++s    k+r
  CTQ26389.1 174 LLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEM--LRRFNLRFSLFDDERYAEAQHdaYNPFETEQLVICSLD-FVRRS----KQR 265
                 799***********************************97654443..44444444444444444333211332223333333333.33222....246 PP

      AAA_34 161 leqlveWlgedfdGvivfDEchkaknlakseekkatktgkavlelqkklpkArvvYvsaTgasepknlaYmsRLglwgegtafkdfedflealek 255
                 le l   +++++d ++v DE+h++  ++    +++++  +a+ +l +++p   ++ + aT    +   ++  RL l    + f+dfe+f+e+ ++
  CTQ26389.1 266 LEHL---CDAEWD-LMVVDEAHHLVWSE----EAPSREYQAIEQLAERVPG--ILLLTATPEQ-LGMESHFARLRLLD-PNRFHDFEQFVEEQQN 348
                 6666...778999.9999****987665....57899999999***99996..7777777643.33335678999996.6789999999988765 PP

>> DUF1525  Protein of unknown function (DUF1525)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.3     0.002         4      29      79 ..     859     908 ..     799     916 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.002
     DUF1525  29 erleeelsaelpadpeqaaalvrqrlnspdwaaleeqieqayqgvadawql 79 
                 e ++++lsa  +    +  ++v+q ++++  ++ e qi++a+qg++da+++
  CTQ26389.1 859 ESFNRQLSAVNRHTGSKLVNAVQQDVHAIL-QQGEAQIAKAAQGLIDAARN 908
                 567778888778888888899999999999.9****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (968 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 6679.25
//
Query:       CTQ26390.1  [L=785]
Description: DNA polymerase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-42  144.5   0.0    6.8e-33  114.1   0.0    2.4  2  DNA_pol_B       DNA polymerase family B
    1.6e-12   47.2   0.0    2.8e-06   26.7   0.0    2.3  2  DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
    0.00013   21.0   0.0      0.014   14.3   0.0    2.1  2  DNA_pol_B_2     DNA polymerase type B, organellar and viral
  ------ inclusion threshold ------
       0.13   12.9   0.1       0.29   11.7   0.1    1.6  1  P63C            P63C domain


Domain annotation for each model (and alignments):
>> DNA_pol_B  DNA polymerase family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.1e-10   9.4e-07      23      77 ..     383     433 ..     364     454 .. 0.77
   2 !  114.1   0.0   1.5e-36   6.8e-33     156     414 ..     491     740 ..     471     767 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.1e-10
                 HHHTTBE-B-----.--SS.-.S----BE----EEESS-EEEEEETTHHHHHHHHT CS
   DNA_pol_B  23 akeegfilpdrtekkgkeeeg.YqGatVlePkkglydkpvlvlDFaSLYPsiiqah 77 
                 +++ g+++p+  +       +  +G+ V++ + glyd+ vlvlD++SLYPsii  +
  CTQ26390.1 383 MHRLGYVAPNLGDV----PPQaSPGGYVMDSRPGLYDS-VLVLDYKSLYPSIIRTF 433
                 56666777743333....222269************85.9*************765 PP

  == domain 2  score: 114.1 bits;  conditional E-value: 1.5e-36
                 HHHHHHHHHHHHHHHTSTTSTT--HHHHHHHHHHHHHHHHHHHHHHHHT...SSGGGT-SS.....T-EEEEEBSSEEEEE-S-.SSHHHHHHHHHHH. CS
   DNA_pol_B 156 QlalKvtaNsvYGftGvansrlpclalAasvTtiGRemLektkelvekkaellskllalpeeaeeeklkviYGDTDSvfielkv.kdveellkigkel. 252
                  +alK+++N++YG++G +  r++   lA+s+T  G  ++ +tk+l+e+k                 +++viYGDTDS f+ lk   + +++++ig+el 
  CTQ26390.1 491 SQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAK-----------------GYDVIYGDTDSTFVWLKRpHSEAQAAEIGRELv 572
                 58*********************************************99.................9***************99899999******983 PP

                 .......HHHHHT.TSTTT--EEEEEEEEEEEEE........ETTEEEEEEEEESSTTSEEEEESSGGGSTTS-HHHHHHHHHHHHHHSSS....S-HH CS
   DNA_pol_B 253 .......aeevseklfkkplklefekvykkllLi........sKKkYaglkvektskanklliKGvdlvRrdncklvkevikkvlelllkdeteersle 336
                        a+e+s++++++ l+le+e  +++ l+         sKK+Yag++ e   +a+++++KG+++vR d+++l+++  +++  +++++    ++ +
  CTQ26390.1 573 sdvnawwAQELSKSQLTSALELEYETHFCRFLMPtirgadtgSKKRYAGMIQE--GDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRN----QPYQ 665
                 33333335566789999****************6333444447********99..77789*******************************....5544 PP

                 HHHHHHHHHHHHHHHHHHTT-S-GGGG-EEEEESS.CCCSSGCCSHHHHHHHHHHHHCSS-.....--TTCEEEEEEBETSS. CS
   DNA_pol_B 337 eglealksilkdvleeleenkvplekfvlskelskepenyksknlphlevakrlkkrneea.....pevgdrisYvivekkke 414
                 +   ++++++    ++l++++ + e++v+ k+l+++ ++y+ +  ph+ +a+   ++n +      ++ + +i+Yv + +  e
  CTQ26390.1 666 D---YVRETI----ARLMNGELD-EQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLgrtqqYQQRGTIKYVWTTSGPE 740
                 4...445555....777888887.89**********************98875555543333444477778888888777654 PP

>> DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.7e-07    0.0012      71     172 ..      80     165 ..      71     170 .. 0.76
   2 !   26.7   0.0   6.2e-10   2.8e-06     241     337 .]     206     298 ..     188     298 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.7e-07
                     EEEEEESSTCHHHHHHHHHHHCCCCCCCCSSS--HHHHHHHHCTS-TTCEEEEETEEEEGCC--C-.SEEEEEETTTSCEETTTCCS-EEEEEEE CS
  DNA_pol_B_exo1  71 ylkvsvsnpnelkkirkelspleeivdvyeydvdylerflidnkivgfgwysvkkylvraegkisncdveidcdvddliakpkesepplrvlsFD 165
                     ++ ++ +  ++l+++ k l   +++v+vye+d+ + er+l+ + i+ + w + +       +++s+    ++      ++ + +  ppl+  s D
      CTQ26390.1  80 IVGLYCRAHRQLMRLEKML--RDSGVTVYEGDIRPPERYLMERFITAPVWVEGE-------TRGSQL---VNA----RMKPNPDYRPPLKWVSLD 158
                     7778888899999*****9..799**************************7777.......666652...222....2222222239******** PP

                     EEETEET CS
  DNA_pol_B_exo1 166 Ieckskk 172
                     Ie+ +++
      CTQ26390.1 159 IETSRHG 165
                     **96554 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 6.2e-10
                     HHHHHHHHHHHH--SEEEESSTTTTHHHHHHHHHHHCCTCCHCG.SCCSCTCEECCCCESEEEEEECEEEETTSEEEEHHHHHHHH.SSSSG-SH CS
  DNA_pol_B_exo1 241 lLqaflefikqydPdvitgYNidnFDlpYilnRakelykvklsklgrlnkggrskvseigfskqarekvkisgrihlDlyrvvkrk.lklpsYkL 334
                     lL++    + ++dPdv++g+N+ +FDl+++++ a+ + ++   +lgr n   + + +e gf+ +     + +gr+++D ++  k    + +s +L
      CTQ26390.1 206 LLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPL--RLGRGN--SELEWREHGFK-NGVFFAQANGRLIIDGIDALKSAfWNFSSFSL 295
                     7888888999*************************555533..557654..33333333333.44777999999999999988877346668888 PP

                     HHH CS
  DNA_pol_B_exo1 335 nav 337
                     +av
      CTQ26390.1 296 EAV 298
                     887 PP

>> DNA_pol_B_2  DNA polymerase type B, organellar and viral
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.1    0.0032        14     215     245 ..     403     432 ..     399     441 .. 0.88
   2 !   14.3   0.0   3.2e-06     0.014     336     387 ..     456     507 ..     447     511 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0032
  DNA_pol_B_2 215 GGrcypsvlgiyeeniyvyDvnSlYPsamth 245
                  GG++ +s  g y + + v D +SlYPs+ + 
   CTQ26390.1 403 GGYVMDSRPGLY-DSVLVLDYKSLYPSIIRT 432
                  999999999999.9*************9865 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 3.2e-06
  DNA_pol_B_2 336 iegyvFeekktlfkeYvdklysaKekakkeknevkrsiaKlllNsLYGrFat 387
                    g  F++ k +    v+++ + +++ak++ n++ ++  K+++N+ YG  +t
   CTQ26390.1 456 FLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGT 507
                  55778888888999999*******************************8777 PP

>> P63C  P63C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   6.6e-05      0.29       6      70 ..     639     704 ..     636     720 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.6e-05
        P63C   6 lseellkwekrFpdefykelyrlrgwkykpsakkkpkvvgkltnelvYer.LakdvleeLrklnpk 70 
                 ++ +  + +++F++e+y +++r + +++  +++    + g+l ++lvY + L   ++e+ r+  p+
  CTQ26390.1 639 VRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKrLRRPLAEYQRNVPPH 704
                 567778899*****************9777888888999*********764777777666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 5837.66
//
Query:       CTQ26391.1  [L=231]
Description: L-ribulose-5-phosphate 4-epimerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-48  162.9   0.1    9.2e-48  162.6   0.1    1.1  1  Aldolase_II     Class II Aldolase and Adducin N-terminal doma
  ------ inclusion threshold ------
       0.22   11.5   2.0       0.61   10.1   0.1    2.1  2  Glyco_transf_4  Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6   0.1     1e-51   9.2e-48       2     184 ..       8     196 ..       7     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: 162.6 bits;  conditional E-value: 1e-51
                  HHHHHHHHHHHTTSSCTTBCEEEEEETSTTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEECECSSSTB-TTHHHHHHHHHH-TT-SEEEEE--HHHH CS
  Aldolase_II   2 elaeasrllarrglvegtgGniSvrvpeedsflitpsgvdfeeltaedlvvvdldsgevvegkekggkpssetplHlaiykarpdaravvHtHspaav 99 
                  ++ ea+  l +++lv+ t+Gn+S+ ++e++ f+i+psgvd++ +ta+d+vvv+l+sgevveg   ++kpss+tp+H+ +y+a+p+ + +vHtHs +a+
   CTQ26391.1   8 QVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEG---NKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHAT 102
                  68899*******************977566666***************************76...569****************************** PP

                  HHHTCCSTSCHCCSSHHHHC.HSSSEEEEES-SSTTCHHH........HHHHHHHHH.H.....S-SEEEETTTEEEEEESSHHHHHHHHHHHHHHHH CS
  Aldolase_II 100 alsalagkeglppltqeaaklllgdevpvipyaapgteel........gealaealk.e.....dakavllrnHGlltvGetleeAvalaetleeaae 183
                  +++ +ag + +p++ +++a+ ++++ vp+++ ++  + e+        g+ ++e+++ +     + ++vl+++HG++++G+++e+Av++a++lee a 
   CTQ26391.1 103 IWA-QAG-QSIPATGTTHAD-YFYGPVPCTRLMT--DAEIngdyewetGNVIVETFRqQgidpaQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAY 195
                  ***.776.55**********.99999***76666..577788888899********9549*999888****************************986 PP

                  H CS
  Aldolase_II 184 i 184
                  +
   CTQ26391.1 196 M 196
                  5 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   6.9e-05      0.61      75     108 ..      93     122 ..      92     146 .. 0.83
   2 ?    0.5   0.2     0.059   5.3e+02      75      88 ..     167     180 ..     165     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6.9e-05
  Glyco_transf_4  75 vvHahspaalgaallalrrrlgiplVltvHglye 108
                     +vH+hs +a ++a   +     ip   t H  y 
      CTQ26391.1  93 IVHTHSRHATIWA--QAG--QSIPATGTTHADYF 122
                     8********9888..333..79*********994 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.059
  Glyco_transf_4  75 vvHahspaalgaal 88 
                     +vH+h+p+a+g  +
      CTQ26391.1 167 LVHSHGPFAWGKNA 180
                     79******998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1848.93
//
Query:       CTQ26392.1  [L=500]
Description: L-arabinose isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.8e-179  594.8   0.1   6.9e-179  594.6   0.1    1.1  1  Arabinose_Isome  L-arabinose isomerase
    6.8e-47  158.0   0.0    2.2e-46  156.4   0.0    1.8  2  Arabinose_Iso_C  L-arabinose isomerase C-terminal domain


Domain annotation for each model (and alignments):
>> Arabinose_Isome  L-arabinose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  594.6   0.1  7.7e-183  6.9e-179       2     356 .]       5     359 ..       4     359 .. 1.00

  Alignments for each domain:
  == domain 1  score: 594.6 bits;  conditional E-value: 7.7e-183
                      GG-EEEEEEB--STS-HHHHHHHHHHHHHHHHHHHHHS--SSEEEE---B-SHHHHHHHHHHHHH-TTEEEEEEEESS---THHHHHHHHH--S CS
  Arabinose_Isome   2 kklevwfvtgsQeLYgeetlkqvaeeakeiveelnesaklpvkvvlkpvvktseeieklvkeanadeeciGvitwmhtfsPakmwikglkalkk 95 
                      +++evwfv+gsQ+LYg+e+l+qv ++a+++v++ln++aklp+k+vlkp+ +t++ei++++++an+d++c+G+++w+htfsPakmwi+gl+ l+k
       CTQ26392.1   5 DNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNK 98 
                      789******************************************************************************************* PP

                      -EEEEE--SSSS--TTT--HHHHHSS-HHHHHHHHHHHHHHTT--EEEEES-TT-HHHHHHHHHHHHHHHHHHHHTT-EEEEES---TT-STT- CS
  Arabinose_Isome  96 PllhlhtQfneeipwdeidmdfmnlnQsaHGdrefgfivarlrlkrkvvvghwkdeevqekiaawaraaaavaeskklkvarfgdnmrevavte 189
                      Pll++htQ+n+++pwd+idmdfmnlnQ+aHG refgfi ar+r +++vv+ghw+d+e +++i+ w+r a++ +++++lkv+rfgdnmrevavt+
       CTQ26392.1  99 PLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTD 192
                      ********************************************************************************************** PP

                      --HHHHHHHH--EEEEE-HHHHHHHHHTS-HHHHHHHHHHHHHHSEE-GGGSTTSTTHHHHHHHHHHHHHHHHHHHHHT-SEEEE-TT--TTSS CS
  Arabinose_Isome 190 GdkveaeiklGvsvntygvgdlvevveavsdeevdalveeyekkYelaeelkeeeereeslreaarielglrkfLeekgfkaftttFedlgglk 283
                      Gdkv+a+ik+G+svnt++vgdlv+vv+++sd +++alv+eye++Y+l+++++ ++e+++++ +aarielg+++fLe++gf+aftttFedl+glk
       CTQ26392.1 193 GDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLK 286
                      ********************************************************************************************** PP

                      S-SSHHHHHHHHHT-EEESTT-HHHHHHHHHHHHHTTTSSS-EEEEEEEEEE--TT--EEEEE-SS---GGGB CS
  Arabinose_Isome 284 qlpglavqrLmaeGyGfgaEGDwktaalvrilkvmaegleggtsfmEdYtydlepgkelvLgaHmlEvcpsia 356
                      qlpglavqrLm++GyGf++EGDwktaal+ri+kvm++gl+ggtsfmEdYty++++g++lvLg+HmlEvcp+ia
       CTQ26392.1 287 QLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIA 359
                      ***********************************************************************98 PP

>> Arabinose_Iso_C  L-arabinose isomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.36   3.3e+03      73      92 ..     259     278 ..     255     288 .. 0.78
   2 !  156.4   0.0   2.5e-50   2.2e-46       1     114 []     363     476 ..     363     476 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.36
                      HHHHHHHHHHTT--SEEEEE CS
  Arabinose_Iso_C  73 lktaaeaWilaGgaHHtvls 92 
                      ++ +++  +++Gg H  + +
       CTQ26392.1 259 IELGMKRFLEQGGFHAFTTT 278
                      67799999*****9965554 PP

  == domain 2  score: 156.4 bits;  conditional E-value: 2.5e-50
                      --EEEE---TTTS-S--EEEE-BB--EEEEEEEEEE-SSSEEEEEEEEEEE--SS--TT--S-EEEEEESS-HHHHHHHHHHTT--SEEEEESS CS
  Arabinose_Iso_C   1 kprlevhplgiGgkedparlvFeakagkavvvslvdlgdrfrlivnevevvkpeeelpkLpvaralwkpkpdlktaaeaWilaGgaHHtvlsla 94 
                      kp l+v+plgiGgk+dparl+F++++g+a+v+sl+dlgdrfrl+vn++e+v ++++lpkLpva+alwk++pdl+ta eaWi aGgaHHtv+s a
       CTQ26392.1 363 KPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHA 456
                      799******************************************************************************************* PP

                      --HHHHHHHHHHHT-EEEEE CS
  Arabinose_Iso_C  95 ltaeqledfaelagielvvi 114
                      l+ +++++fael +iel vi
       CTQ26392.1 457 LNLDDMRQFAELHDIELTVI 476
                      ****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3535.04
//
Query:       CTQ26393.1  [L=569]
Description: L-ribulokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.8e-38  130.0   0.4    1.6e-37  129.2   0.4    1.5  1  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
    4.1e-08   33.1   0.0    0.00061   19.4   0.0    2.6  2  FGGY_N       FGGY family of carbohydrate kinases, N-terminal 
     0.0084   15.8   0.7      0.028   14.2   0.7    1.9  1  XPC-binding  XPC-binding domain
  ------ inclusion threshold ------
        1.7    9.4  10.6        4.3    8.1   0.0    3.2  3  LTXXQ        LTXXQ motif family protein


Domain annotation for each model (and alignments):
>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.4   3.6e-41   1.6e-37       3     198 .]     291     501 ..     289     501 .. 0.88

  Alignments for each domain:
  == domain 1  score: 129.2 bits;  conditional E-value: 3.6e-41
      FGGY_C   3 vslGTssflll.vgtkpv..isehglltpvagedgkpeyalegsiavagslvawlldnl............glreeirdagev.....eeslaelaaae 81 
                  ++GTs++ +l   ++ v  + ++g++++v g+  + + ++e+++++ g++ aw+ + l            +lre+i+ +++       e +a     +
  CTQ26393.1 291 KVIGTSTCDILiADKESVgeRTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILgwpleqlaqqqpALREQIKASQKQllpalTEAWA-----N 384
                 589********6677777****************************************99988877766666666666666554333333333.....3 PP

      FGGY_C  82 avadaggvvfvpafsglrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgs.kndllmqllAdilgvpVer 179
                   +    +v++++f+g r+p+++++++g+it+l+  t++++++  ++ a+a+++rai+e+++++ g+p++++++ GG + kn+++mq ++d+l++p+++
  CTQ26393.1 385 NPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQ-GIPVNNVMALGGIArKNQVIMQACCDVLNRPLQI 482
                 44444899999*****************************************************.********************************** PP

      FGGY_C 180 pktaeatalGaAilAavaa 198
                 +++++++alGaAi Aavaa
  CTQ26393.1 483 VASDQCCALGAAIFAAVAA 501
                 *****************95 PP

>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.4e-07   0.00061       2     166 ..       4     190 ..       3     196 .. 0.76
   2 !   10.9   0.0   5.6e-05      0.25     213     245 .]     249     281 ..     235     281 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.4e-07
                 EEEEEEESSEEEEEEEE.TTS-EEEEEEEE--EB-SST......T--EE-HHHHHHHHHHHHHHHHHHC.T.-GCCEEEEEEEE-SS-EEEEETTTEES CS
      FGGY_N   2 ilglDcGttstkaivld.ekgkvvasaqaelelsspke......gwaeqdpeeiwqalaeairkvleqa.gisekqikaIgisgqreglvllDkndkpL 92 
                 ++glD G  s++a++++ + g  +a + + ++  ++ +      ++  + p+  ++++ +a+++vl+ +   +  ++++Ig+ + + + + +D ++++L
  CTQ26393.1   4 AIGLDFGSDSVRALAVEcASGAELATSVEWYPRWREGQycdganNRFRHHPRDYIESMEAALKSVLASLsAEQRADVVGIGVDSTGSTPAPVDAEGNVL 102
                 79*******************9999998887766654445444488899******************994445679******************99988 PP

                 S...........EEE-TT--TTHHHHHHHHH....TTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT CS
      FGGY_N  93 y...........nailwkdrrtaeiveklke....egnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtg 166
                               +lwkd+ + e++e + +     g+e++ + + g+  s  f + +l+ + ++   v+++++ ++   d++   L+g
  CTQ26393.1 103 AlreefadnpnaMFVLWKDHTAVEEAEAITRlchqPGKEDYSRYIGGIYSSEWFWAKILH-VTREDSAVAQAAASWVELCDWVPALLSG 190
                 533333333322468999999999999988865556677777777777777777665555.6666666677777777777777666665 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.6e-05
                 EEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 213 igelkpelaaklGlkegvpvvggggDqqaaalG 245
                 +g+l +e a+ lGl ++v ++gg++D  ++a+G
  CTQ26393.1 249 VGTLSAEWAQRLGLSQTVAISGGAFDCHMGAVG 281
                 899****************************98 PP

>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.7   6.2e-06     0.028      28      55 ..     353     380 ..     351     382 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.2e-06
  XPC-binding  28 LqqlaqsnPqllqlIqqnqeeFlqlLne 55 
                  L+qlaq+ P+l ++I++ q ++l  L+e
   CTQ26393.1 353 LEQLAQQQPALREQIKASQKQLLPALTE 380
                  89*********************99987 PP

>> LTXXQ  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00097       4.3      79      99 ..      59      79 ..      52      83 .. 0.90
   2 ?   -0.8   0.5      0.58   2.6e+03      14      29 ..     366     381 ..     353     387 .. 0.50
   3 ?    3.4   3.9     0.028   1.2e+02       3      37 ..     512     546 ..     510     568 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00097
                HHHHHHHHHHHHTS-HHHHHH CS
       LTXXQ 79 kkraealkqfyavLtpEQkak 99
                +++ +alk++ a+L++EQ+a 
  CTQ26393.1 59 ESMEAALKSVLASLSAEQRAD 79
                6799***************96 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.58
                 ---HHHHHHHHHHHHH CS
       LTXXQ  14 kLtdaQkaalkalaea 29 
                 ++  +Qk+ l al+ea
  CTQ26393.1 366 QIKASQKQLLPALTEA 381
                 2334444445554444 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.028
                 .XXXXSTTTT----HHHHHHHHHHHHHHHHHS--- CS
       LTXXQ   3 egriaklkaeLkLtdaQkaalkalaeaaraeakpl 37 
                 +++++++++ L++ +aQ + +++l + +++ + + 
  CTQ26393.1 512 QRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSA 546
                 6788999******************9998866655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4150.40
//
Query:       CTQ26394.1  [L=55]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      163  (0.00909142); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 436.92
//
Query:       CTQ26395.1  [L=281]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-24   85.3   0.9    5.9e-24   84.5   0.9    1.4  1  AraC_binding    AraC-like ligand binding domain
    2.1e-20   72.7   0.3      5e-20   71.6   0.0    1.8  2  HTH_18          Helix-turn-helix domain
    2.5e-19   68.9   0.2    1.8e-08   34.2   0.0    2.6  3  HTH_AraC        Bacterial regulatory helix-turn-helix protein
    4.7e-05   23.1   0.0    8.3e-05   22.3   0.0    1.4  1  AraC_binding_2  AraC-binding-like domain
    7.2e-05   22.4   0.1    0.00016   21.3   0.1    1.5  1  Cupin_2         Cupin domain
  ------ inclusion threshold ------
      0.025   14.0   0.5      0.032   13.7   0.5    1.4  1  Cupin_4         Cupin superfamily protein
       0.11   12.2   0.0       0.21   11.3   0.0    1.4  1  Cupin_3         Protein of unknown function (DUF861)


Domain annotation for each model (and alignments):
>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.9   2.3e-27   5.9e-24       9     136 .]      28     160 ..      21     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 2.3e-27
                   TTSTT-SEEEETT-..SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTS.EEEEEEEEE---GGGGGGG---EEETTEEE..E-- CS
  AraC_binding   9 agypdhsfpphvhd..eyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsed.gweyrwlyfegelleriledssilagapllpalle 102
                   a    + f  +  +   y++ ++++G+g +   g+++ ++pGd++L+ppge+H y  ++++ +w+++w+yf++++++  + +++ + +++++  ++ 
    CTQ26395.1  28 AQGYLDFFIDRPLGmkGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDAsEWYHQWVYFRPRAYWHEWLNWPTIFAQTGF--FRP 122
                   55555555444444449**************************************************************************9..*** PP

                   -TTTHHHHHHHHHHH....HHHHT-SSTTHHHHHHHHH CS
  AraC_binding 103 deelaqllralfrll....eetrsgddllleallyell 136
                   de+ ++ + +lf+++    +++++ ++ll+  ll +ll
    CTQ26395.1 123 DEQWQARFGELFGQIvdagQGAGRYSELLAINLLEQLL 160
                   ***************99999999999999999999997 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       4.4   1.1e+04      26      40 ..     157     171 ..     148     182 .. 0.71
   2 !   71.6   0.0   1.9e-23     5e-20       1      80 [.     200     278 ..     200     279 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.4
                 HHHHHHHHHHHHHHH CS
      HTH_18  26 eylrrlRlerArrlL 40 
                 e l  +R+e++ + L
  CTQ26395.1 157 EQLLLRRMEAINESL 171
                 556667888887777 PP

  == domain 2  score: 71.6 bits;  conditional E-value: 1.9e-23
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +a+++++s+++L++lf+++lg+++  ++ + R+ +A+ lL ++t +++a++   +GF+d+ +Fsr f+k +g +Pse+r+
  CTQ26395.1 200 VAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLL-STTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRA 278
                 599***********************************88.57***********************************96 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       5.6   1.4e+04      33      39 ..      21      27 ..      20      27 .. 0.81
   2 !   32.3   0.0   2.8e-11   7.3e-08       1      39 [.     186     225 ..     186     228 .. 0.92
   3 !   34.2   0.0   7.2e-12   1.8e-08       2      41 ..     240     277 ..     239     278 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.6
                SSS-HHH CS
    HTH_AraC 33 tGmtPsq 39
                tG tP +
  CTQ26395.1 21 TGLTPIE 27
                8****75 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 2.8e-11
                 HHCCCSCT.--HHHHHHHTTSSHHHHHHHHHHHSSS-HHH CS
    HTH_AraC   1 Lrenlstn.ltiediAdelgfSrsyFsrlFkketGmtPsq 39 
                 + ++l+++ + i+++A+++++S+s +s+lF++++G++   
  CTQ26395.1 186 ISDHLADShFDIASVAQHVCLSPSRLSHLFRQQLGVSVLG 225
                 789999999***************************9765 PP

  == domain 3  score: 34.2 bits;  conditional E-value: 7.2e-12
                 HCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   2 renlstnltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                     +t++ i+ +  ++gf ++ yFsr+Fkk tG +Ps++r
  CTQ26395.1 240 S---TTRMPIATVGRNVGFeDQLYFSRVFKKCTGASPSEFR 277
                 5...899*********************************9 PP

>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   3.2e-08   8.3e-05      56     167 ..      45     160 ..      35     164 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3.2e-08
  AraC_binding_2  56 ylvqlplsGraeveqggrevvlgpgdavvldpgr.pyrlrwsadce...qlvlripralLerplraplrfapr..ldldsgagalwrrllrslva 144
                     y ++l+++G+++++ +g+++v++pgd++++ pg+     r+++++e   q+v   pra+ +++l  p  fa++  ++ d +  a++++l  ++v+
      CTQ26395.1  45 YILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEiHHYGRHPDASEwyhQWVYFRPRAYWHEWLNWPTIFAQTgfFRPDEQWQARFGELFGQIVD 139
                     89********************************6555677665556637777777999999999999999777899999999999999999999 PP

  AraC_binding_2 145 elaelgpalasspllaaqleeLl 167
                        + g    s+ l+++ le+Ll
      CTQ26395.1 140 AGQGAG--RYSELLAINLLEQLL 160
                     997655..477777778888887 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   6.2e-08   0.00016      26      58 ..      51      83 ..      46      92 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 6.2e-08
                EESEEEEEECTEEEEEETTEEEEE-TT-EEEEE CS
     Cupin_2 26 leGegeltvdgeeveleaGdsvyfpagtpHrfr 58
                ++Geg++   ge+++ ++Gd+++fp+g+ H+++
  CTQ26395.1 51 IRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYG 83
                79*****************************95 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.5   1.3e-05     0.032     174     195 ..      60      81 ..      50     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
                 -SEEEEE-TT-EEEE-TT-EEE CS
     Cupin_4 174 pvedfvLepGDlLYlPrgviHq 195
                 + e+fv +pGD+L +P+g iH+
  CTQ26395.1  60 HGEQFVCRPGDMLLFPPGEIHH 81 
                 55799*************8875 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.3e-05      0.21      32      60 ..      51      78 ..      49      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.3e-05
                EECEEEEEETTTEEEEEETTEEEEE-TTE CS
     Cupin_3 32 leGevkvtpeggetvelraGDlvvlpkgl 60
                ++Ge  ++  +ge++  r+GD++ +p+g 
  CTQ26395.1 51 IRGEGVINN-HGEQFVCRPGDMLLFPPGE 78
                689999999.*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2068.20
//
Query:       CTQ26396.1  [L=255]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.5e-20   71.6   1.5    7.5e-20   71.6   1.5    2.4  3  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1         1   1.8e+04      15      22 ..      16      23 ..       9      29 .. 0.45
   2 !   71.6   1.5   4.2e-24   7.5e-20       1     118 [.      36     159 ..      36     161 .. 0.90
   3 ?    1.0   0.9     0.032   5.8e+02      18      55 ..     179     217 ..     156     250 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1
  SNARE_assoc 15 glllgtlv 22
                 +ll ++lv
   CTQ26396.1 16 SLLAVMLV 23
                 22223333 PP

  == domain 2  score: 71.6 bits;  conditional E-value: 4.2e-24
  SNARE_assoc   1 lPsevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgrkalrrkllsekrvka...lerlverygflallllrllpivPrdlvnyvaG 90 
                  lP++v+++ +G+l+     +++ ++l+ ++g+llG++++++lg ++  k l r+ + +k+       e+ ++++  +++l++r++    r+lv++vaG
   CTQ26396.1  36 LPGTVMMAGLGALIgggevNFWQAWLAGIVGCLLGDWISFWLGWRFK-KPLHRWSFMKKNRALlekTEHALHQHSMITILIGRFVGPT-RPLVPMVAG 131
                  79************99999************************9999.767666666665544667999*****************88.********* PP

  SNARE_assoc  91 ltrvsfkrFflatfiGsipwalvyaylG 118
                  ++++++++F+l ++iG+++w  +y + G
   CTQ26396.1 132 MLDLPVAKFVLPNIIGCLLWPPLYFLPG 159
                  ********************99888766 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.032
  SNARE_assoc  18 lgtlvtslgallGaslayllgrylgr..kalrrkllsekr 55 
                  + +l ++l a l+++l++ l r +    ++l r +l + r
   CTQ26396.1 179 WLLLGAALLAWLAGWLCWRLWRSAKTsgDRLTR-WLPRGR 217
                  455556666666667777776666545333333.444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1923.20
//
Query:       CTQ26397.1  [L=233]
Description: thiamin transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-34  118.9   0.0    3.3e-34  118.4   0.0    1.2  1  ABC_tran      ABC transporter
    1.2e-10   41.7   2.9    1.4e-07   31.6   0.1    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      6e-06   25.9   0.0      2e-05   24.2   0.0    1.7  1  SMC_N         RecF/RecN/SMC N terminal domain
    3.4e-05   24.3   0.3      6e-05   23.5   0.3    1.4  1  AAA_16        AAA ATPase domain
    0.00031   20.7   0.1     0.0013   18.7   0.0    1.9  2  RsgA_GTPase   RsgA GTPase
    0.00038   20.1   0.0      0.001   18.8   0.0    1.7  1  AAA_29        P-loop containing region of AAA domain
    0.00083   19.6   0.1     0.0035   17.6   0.1    2.0  1  AAA_22        AAA domain
     0.0032   17.7   0.1      0.046   13.9   0.1    2.3  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
     0.0065   16.5   0.0      0.014   15.4   0.0    1.6  1  MMR_HSR1      50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.02   14.4   0.0       0.25   10.9   0.0    2.1  2  AAA_25        AAA domain
      0.027   14.5   0.1      0.062   13.3   0.1    1.5  2  Dynamin_N     Dynamin family
      0.042   13.9   0.0      0.086   12.9   0.0    1.5  1  DUF87         Helicase HerA, central domain
      0.051   12.9   0.1       0.12   11.8   0.0    1.6  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.056   13.7   0.1      0.095   13.0   0.1    1.3  1  Dpoe2NT       DNA polymerases epsilon N terminal
      0.078   12.7   0.1       0.97    9.1   0.0    2.1  2  IstB_IS21     IstB-like ATP binding protein
      0.078   13.2   0.0       0.16   12.2   0.0    1.7  2  AAA_28        AAA domain
        0.1   13.1   0.0       0.18   12.3   0.0    1.3  1  AAA_23        AAA domain
       0.12   12.1   0.0        0.2   11.4   0.0    1.3  1  AAA_24        AAA domain
        0.2   12.1   0.0          2    8.9   0.0    2.1  2  RNA_helicase  RNA helicase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0   3.5e-37   3.3e-34       4     136 ..      18     157 ..      16     158 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 3.5e-37
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiekal 89 
                  +l++ +ge++a++G++GaGKStLl+l+ag l p++G++l++g+  +   ++ +++ +++l+qe++lf++lt+r+n             e+++++++++
  CTQ26397.1  18 FTLDVARGERIAVLGPSGAGKSTLLNLIAGFLPPASGSLLINGEAHNA--TPPAQRPVSMLFQENNLFNHLTIRQNislgihpglklsrEQQAQVTAIA 114
                 5899****************************************9999..999**********************************9999999***** PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  ++g++ l ++       +LSgGq+qr alar+l++++++lllDEp+
  CTQ26397.1 115 GQMGIDALLERLP----GELSGGQRQRAALARCLVRQQPVLLLDEPF 157
                 *******999998....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   1.1   0.00048      0.45       3      22 ..      29      48 ..      28      88 .. 0.83
   2 !   31.6   0.1   1.5e-10   1.4e-07     223     299 ..     116     190 ..      71     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00048
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                ++ Gp g+GKS+LL ++ ++
  CTQ26397.1 29 AVLGPSGAGKSTLLNLIAGF 48
                689**************877 PP

  == domain 2  score: 31.6 bits;  conditional E-value: 1.5e-10
      AAA_21 223 flengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSp 299
                 ++  +   e+ + elS G+++  a l+ +l + +  ++ll+DEp + L+P+l  + l l+ + +++    +++++HS 
  CTQ26397.1 116 QMGIDALLERLPGELSGGQRQR-AALARCLVRQQ--PVLLLDEPFSALDPALRQEMLSLVaDVCEQQQLTLLMVSHSV 190
                 5555566678899*********.99999999888..9********************99999999999********95 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.1e-08     2e-05      27     198 ..      28     187 ..      18     205 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.1e-08
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEE.E-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingke.vtkkev 123
                  a++Gp G+GKs ll+ i           l  ++ s li+   ++     +  v+++f++++       ++++i+++++ + +   k+ +++ ++ + +
  CTQ26397.1  28 IAVLGPSGAGKSTLLNLIAG--------FLPPASGSLLINGeAHNATPPAQRPVSMLFQENNLF-----NHLTIRQNISLGIHPGLKLSREQqAQVTAI 113
                 5899************9943........4556777889998555556666778*****999987.....778898888888888888876540333666 PP

                 HHHHHCTT-STT...CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SS CS
                 xxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiske...lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislr 198
                 + ++    + +    +LSgG+++ +ala       v+++p+ llDe  +aLD + ++++ +l+    ++ Q+    ++
  CTQ26397.1 114 AGQMGIDALLERlpgELSGGQRQRAALARC----LVRQQPVLLLDEPFSALDPALRQEMLSLVADVCEQQQLTLLMVS 187
                 6555544443324559**********9877....5899*************************998888886443333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.3   6.4e-08     6e-05      21     160 ..      24     174 ..      16     186 .. 0.63

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 6.4e-08
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd.ggiflrgkcdql..esaipysa.laqalareellrqllde...........aesaeleawrekleea 104
                 +g  e + + G+sG GKs+l++ ++  l  + g ++++g+++    +     +  +  ++ ++ l++ l  +           + s+e++a  +++ ++
  CTQ26397.1  24 RG--ERIAVLGPSGAGKSTLLNLIAGFLPPAsGSLLINGEAHNAtpP----AQRpVSMLFQENNLFNHLTIRqnislgihpglKLSREQQAQVTAIAGQ 116
                 44..6799*****************9999884466688888888333....333356666666888888877777777764443333444444444444 PP

      AAA_16 105 la...avpelagaea..srllellkrllallsrderplvlvlDdlqwadeaslql.laaLlr 160
                 ++       l+g+++  +r +++l+r+l     +++p++l+ + +  +d+a +q  l++ ++
  CTQ26397.1 117 MGidaLLERLPGELSggQRQRAALARCL----VRQQPVLLLDEPFSALDPALRQEmLSLVAD 174
                 4466644555555557788888888888....335555555556777777777774444444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.3e-06    0.0013      98     121 ..      24      47 ..      15      57 .. 0.86
   2 ?   -1.6   0.0       2.3   2.2e+03      93     110 ..     102     119 ..      92     131 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.3e-06
                  TTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallp 121
                  +++ ++++G+SG+GKStL+n +++
   CTQ26397.1  24 RGERIAVLGPSGAGKSTLLNLIAG 47 
                  56778999************9976 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.3
                  HHHHCTTSEEEEECSTTS CS
  RsgA_GTPase  93 lkellkdktsvlvGqSGv 110
                  l+++ + ++++++Gq G+
   CTQ26397.1 102 LSREQQAQVTAIAGQMGI 119
                  566667788889998876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.1e-06     0.001      17      50 ..      20      53 ..       5      65 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.1e-06
      AAA_29 17 ieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                +++ + + + + GpsG+GKSTll  i+  L pa+
  CTQ26397.1 20 LDVARGERIAVLGPSGAGKSTLLNLIAGFLPPAS 53
                4555444899*************87777777766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   3.7e-06    0.0035       8     128 ..      28     186 ..      23     193 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.7e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee............erpevvfvtlpsstsskdllrellralglelka........................ 70 
                 ++v G+sG+GK+tll+ ++  l+ ++                +rp  ++++ +++ +  ++++++   ++ +lk                         
  CTQ26397.1  28 IAVLGPSGAGKSTLLNLIAGFLPPASGSLLingeahnatppaQRPVSMLFQENNLFNHLTIRQNISLGIHPGLKLsreqqaqvtaiagqmgidallerl 126
                 7899******************86544444999999999997666666999999999999999999999966665889999999999999999998777 PP

      AAA_22  71 ..erlsseellealeqalraravielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                   e    ++ ++al++ l +++   +l++DE    l+   ++e+l+ + +  +  +++++l++v
  CTQ26397.1 127 pgELSGGQRQRAALARCLVRQQP--VLLLDEPFSaLDpalRQEMLSLVADVCE--QQQLTLLMV 186
                 76666666666777777777766..9999996666876556888888877777..888887765 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   4.9e-05     0.046      30      88 ..     127     172 ..     104     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.9e-05
     SbcCD_C  30 sgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                  g+lSGG++q        aala  + ++        +++LDE Fs lD+  ++++l+l+
  CTQ26397.1 127 PGELSGGQRQ-------RAALARCLVRQ------QPVLLLDEPFSALDPALRQEMLSLV 172
                 5666666663.......34444444442......24799*****************987 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.5e-05     0.014       1      21 [.      27      47 ..      27      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-05
                EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltg 21
                ++a++G + +GKStL+n + g
  CTQ26397.1 27 RIAVLGPSGAGKSTLLNLIAG 47
                69***************9986 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00027      0.25      31      55 ..      23      47 ..       9      89 .. 0.75
   2 ?    1.3   0.0      0.23   2.2e+02     166     189 ..     166     189 ..     156     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00027
      AAA_25 31 pagelallaGapgtGKttlaldlal 55
                ++ge +++ G++g+GK+tl+  +a 
  CTQ26397.1 23 ARGERIAVLGPSGAGKSTLLNLIAG 47
                699***************9866665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.23
      AAA_25 166 galvealeriarrtgaavllvhHv 189
                 +++++ +++++++ + ++l+v H+
  CTQ26397.1 166 QEMLSLVADVCEQQQLTLLMVSHS 189
                 6788888999*************8 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   6.6e-05     0.062       1      21 [.      28      48 ..      28      63 .. 0.89
   2 ?   -2.0   0.0       3.5   3.3e+03      93     111 ..     140     158 ..      97     195 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.6e-05
                EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlge 21
                iav+G   +GKS++ln + g 
  CTQ26397.1 28 IAVLGPSGAGKSTLLNLIAGF 48
                89****************996 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.5
                 EEEEETTS-SEEEEE---B CS
   Dynamin_N  93 lkilsllvkgltlvDlPGl 111
                 l  +   ++ + l+D P  
  CTQ26397.1 140 LARCLVRQQPVLLLDEPFS 158
                 4444444444444444433 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.1e-05     0.086      16      43 ..      18      45 ..       9      58 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.1e-05
       DUF87 16 ldlnklvtrHlAilgsTGsGKSntvavL 43
                + l+ +  +++A+lg +G+GKS++  ++
  CTQ26397.1 18 FTLDVARGERIAVLGPSGAGKSTLLNLI 45
                5555566789**************9988 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.12      20      52 ..      23      55 ..      12      82 .. 0.84
   2 ?   -2.3   0.0       2.4   2.3e+03      37      57 ..     163     183 ..     129     199 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
  Mg_chelatase 20 aGgHnlllvGppGsGKtmlakrlpsllpplsee 52
                  a g  + ++Gp+G+GK+ l + +++ lpp s +
    CTQ26397.1 23 ARGERIAVLGPSGAGKSTLLNLIAGFLPPASGS 55
                  455678899********************9865 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.4
  Mg_chelatase  37 mlakrlpsllpplseeealev 57 
                    l + + sl++++ e+++l  
    CTQ26397.1 163 ALRQEMLSLVADVCEQQQLTL 183
                   344455555555555555544 PP

>> Dpoe2NT  DNA polymerases epsilon N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1    0.0001     0.095      20      69 ..     145     193 ..     140     196 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0001
     Dpoe2NT  20 lrseaskylaevllsldeeeledwlekiieavekQpLssnliersvveka 69 
                 +r+  + +l e ++ ld + ++++l  +++  e Q+L + ++++sv e+a
  CTQ26397.1 145 VRQQPVLLLDEPFSALDPALRQEMLSLVADVCEQQQLTLLMVSHSV-EDA 193
                 688889999**********************************985.544 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0     0.001      0.97      44      63 ..      22      41 ..      16      47 .. 0.87
   2 ?    1.3   0.0      0.26   2.5e+02     100     143 ..     138     181 ..     116     201 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.001
   IstB_IS21 44 iekkenivllGpsGvGKshl 63
                +++ e i++lGpsG+GKs l
  CTQ26397.1 22 VARGERIAVLGPSGAGKSTL 41
                678899***********987 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.26
   IstB_IS21 100 aralkrllkv.dllilDdlgllpldqaeaellfeviekryerrsi 143
                 a  ++ l++   +l+lD+  +  ld a +++++ ++++  e++ +
  CTQ26397.1 138 AALARCLVRQqPVLLLDE-PFSALDPALRQEMLSLVADVCEQQQL 181
                 333455666624677777.68999***********9999888754 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00017      0.16       1      20 [.      27      46 ..      27     113 .. 0.85
   2 ?   -2.6   0.0       6.1   5.7e+03      70      80 ..     143     155 ..     130     191 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
      AAA_28  1 kivitGgestGKTtlleaLa 20
                +i+++G++++GK+tll+ +a
  CTQ26397.1 27 RIAVLGPSGAGKSTLLNLIA 46
                79**************9988 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.1
      AAA_28  70 a..aankvlfcDr 80 
                 +  ++++vl++D 
  CTQ26397.1 143 ClvRQQPVLLLDE 155
                 2444555555553 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00019      0.18      24      40 ..      30      46 ..      18      50 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00019
      AAA_23 24 ItGpNGaGKTTildAik 40
                + Gp GaGK+T+l+ i 
  CTQ26397.1 30 VLGPSGAGKSTLLNLIA 46
                68************986 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00021       0.2       3      22 ..      26      45 ..      24      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                 +i++ Gpsg+GK+tl++ +
  CTQ26397.1 26 ERIAVLGPSGAGKSTLLNLI 45
                699*************9866 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0021         2       2      19 ..      29      46 ..      28      64 .. 0.88
   2 ?    0.9   0.0      0.62   5.9e+02      48      88 ..     146     187 ..     143     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0021
  RNA_helicase  2 wlyGpsgeGKStlakeLa 19
                   + Gpsg GKStl + +a
    CTQ26397.1 29 AVLGPSGAGKSTLLNLIA 46
                  689**********99865 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.62
  RNA_helicase  48 tgqevvvidDfgqvkdee.npsdlaelirlvsstpyplnmas 88 
                   ++q+v++ d+  +  d +  +++l+ +  +++ ++++l m s
    CTQ26397.1 146 RQQPVLLLDEPFSALDPAlRQEMLSLVADVCEQQQLTLLMVS 187
                   68999999999999999988889999999*999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1725.77
//
Query:       CTQ26398.1  [L=536]
Description: fused thiamin transporter subunits of ABC superfamily: membrane components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-12   45.6  26.1    8.1e-09   35.5  11.8    3.6  4  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   1.6    0.0023        41     116     177 ..      20      83 ..       6      85 .. 0.75
   2 !   35.5  11.8   4.5e-13   8.1e-09       5     183 ..      74     268 ..      70     270 .. 0.84
   3 ?   -1.0   0.8     0.068   1.2e+03     142     168 ..     311     348 ..     289     365 .. 0.43
   4 !   24.2   6.3   1.3e-09   2.2e-05      25     172 ..     376     523 ..     361     528 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0023
  BPD_transp_1 116 lafggllggavlleflgswpG..lgtllleailgydyseisnggvlalviavlllnlvadilqr 177
                    ++  ++  a++l + +s pG   ++++ +++l+  + +  + ++l ++i+v + +++a++l+r
    CTQ26398.1  20 ATLLCAVALAAFLALWFSAPGagWQSVFSDSYLWHVVRFSFWQASLSALISVGPAIFLARALYR 83 
                   3333446666666666777775588999999999999999999***************999997 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 4.5e-13
  BPD_transp_1   5 Gilaa...lnrnkkldkllrpliivllslPsfv..laillvlvf..............vilsilghlilpviillllsaapyvrlirraalrslpkd 82 
                   +i++a   ++r+++++ ll++l  ++l lP++v  ++il v                   +    ++  +++++ +++++p+++++  +al+++p +
    CTQ26398.1  74 AIFLAralYRRRFPGRTLLLRLCAMTLILPVLVavFGILSV--YgrqgwlaslfhalgWQWEFSPYGLQGILLAHVFFNMPMATRLLLQALENIPGE 168
                   688899999************************75444433..235888888878876667777799999*************************** PP

  BPD_transp_1  83 lveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis.nggvlalviavlllnlvadilqrl 178
                   +++ a  lG++    fr v  P + + i + ++l f++ +  ++ ++ lg++p  +t  l ++++  ++  +  + +++l+++ +l++l + +l + 
    CTQ26398.1 169 QRQIAAQLGMRGYAFFRLVEWPWLRRHIPAVAALIFMLCFASFATVLSLGGGPKATTIELAIYQALSFD--YdPARAAMLALIQMLCCLGLVLLSQR 263
                   **************************************************9985444444444444444..44599999999999999988888888 PP

  BPD_transp_1 179 ldprv 183
                   l++ v
    CTQ26398.1 264 LSKAV 268
                   87765 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.068
  BPD_transp_1 142 leailgydyseis...........nggvlalviavlll 168
                   ++ i+ ++++  +             +++a++++ + l
    CTQ26398.1 311 VDGINRNMLDVLAqpalwqalstsLRIAIAAGLLSVTL 348
                   33333333333333333332222212223333322222 PP

  == domain 4  score: 24.2 bits;  conditional E-value: 1.3e-09
  BPD_transp_1  25 ivllslPsfvlaillvlvfvilsilg.hlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafgg 120
                    ++l++P +vla  ++l++ +  +l  ++   vi++ +l+a+py++ + ++ +r +   +  +   lG   + ++r v l+++ +p++  l++a ++
    CTQ26398.1 376 MLILAMPGIVLATGFFLLLNNTIGLPeSADGIVIFTNALMAIPYALKVLENPMRDIAARYSMLCQSLGIEGFARLRVVELRALRRPLAQALAFACVL 472
                   578999****888888887555555515555599999************************************************************ PP

  BPD_transp_1 121 llggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlva 172
                   ++g++ ++ ++g+    ++++   +++  y +   g+v al++++l ++l++
    CTQ26398.1 473 SIGDFGVVALFGNEAFRTLPFYLYQQIGAYRSQD-GAVTALLLLLLCFLLFT 523
                   ************8866667777777777777777.44444333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4004.09
//
Query:       CTQ26399.1  [L=327]
Description: thiamin transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-17   63.3   1.9    2.8e-17   62.9   1.9    1.1  1  SBP_bac_6   Bacterial extracellular solute-binding protein
      5e-14   53.0   4.6      8e-14   52.3   4.6    1.2  1  SBP_bac_1   Bacterial extracellular solute-binding protein
    3.2e-13   49.9   0.2    4.9e-13   49.4   0.2    1.3  1  SBP_bac_11  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   1.9   4.7e-21   2.8e-17       1     221 [.      73     290 ..      73     313 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 4.7e-21
   SBP_bac_6   1 nplpdlilsfdkdflekfieeglfqpld.panlpnvnkdfaeeglkdpdgkyypygvgplvlavnkdrlkgrpvPksWaDLldPeykgkvalpgnngsd 98 
                 n+++d++l++d+++le +++ +lf++ + pa++ +v+      g+  +  +++py++g++ ++++k +l++   Pks ++L++   k +v   ++++s+
  CTQ26399.1  73 NSKADVVLGLDNNLLEAAAQSKLFAKSNvPASAVSVP-----GGWDND--TFVPYDYGYFAFVYDKNKLANP--PKSLKELVEGPQKWRVIYEDPRTST 162
                 689**********************766666666666.....566555..9******************766..**********99***********88 PP

   SBP_bac_6  99 lfealllalykdfgedgvkkllrnlkanlhpaq..mvkaagslesge..pavsvvpyffadilpekkkgknlkvvwPedGalvspifmlvkkg.kkkel 192
                 +   lll + k +  d++ + + +l+a+   ++    +a+g   +ge   ++s ++  +++++ ekk  +n++   + +G ++ +++++  ++ k++el
  CTQ26399.1 163 PGLGLLLWMQKVY-GDQAPEAWQKLAAKTVTVTkgWSEAYGLFLKGEsdLVLSYTTSPAYHMIEEKK--DNYAAASFAEGHYLQVEVAARTAAsKQPEL 258
                 8888888888844.46666777777777777777877788888888855677777777888999988..7***************************** PP

   SBP_bac_6 193 akafidfllspevqailakaggvfPvv...tn 221
                 a++f+ f++s  +q+++   +  +Pv+   + 
  CTQ26399.1 259 AEKFLKFMVSLGFQNAIPTGNWMYPVTkvtLP 290
                 *****************998888**9655433 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   4.6   1.3e-17     8e-14      13     310 ..      39     268 ..      34     272 .. 0.84

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 1.3e-17
                 HHHHHHHHHHTTEEEEEEEE.CHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCEEEES. CS
   SBP_bac_1  13 lvakafekehpgikVeiesv.gsgslaqkltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkildskvly. 108
                 +v kafe+e+ g + +++   ++ sl +  +l++++ +  aDv+ + dn  +   a+++l++  +  + a  +pg +d                     
  CTQ26399.1  39 AVKKAFEAEC-GCELKFVALeDGVSLLN--RLRMEGKNSKADVVLGlDNNLLEAAAQSKLFAKSNVPASAVSVPGGWDN-----------------DTf 117
                 46578***88.*********99999999..********999*****999999999999999999999999988887652.................233 PP

                 EEEE.EEEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHHHHHHHHHHH CS
   SBP_bac_1 109 vPly.aargliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaatylvklyav 206
                 vP++ ++ +++Y+k +++    +pp++ +elve  +k +   + p    r+++ +  + ++         + ++d+            a+++++kl   
  CTQ26399.1 118 VPYDyGYFAFVYDKNKLA----NPPKSLKELVEGPQKWRVIYEDP----RTSTPGLGLLLWM-------QKVYGDQ------------APEAWQKLA-- 187
                 999966************....7889**********999999999....4444444444443.......3333333............566666666.. PP

                 HHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCSTHHHHHHHH CS
   SBP_bac_1 207 anltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgsknpeaAkkFl 305
                        +  ++ +k++++a++lf +Ge ++ +++++++  +m++++k ++aa++   + +l                 +   a  ++sk+pe A+kFl
  CTQ26399.1 188 -------AKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHMIEEKKDNYAAASFAEGHYL----------------QVEVAARTAASKQPELAEKFL 263
                 .......8999********************************9999999999999998766................88999**************** PP

                 HHHTS CS
   SBP_bac_1 306 dflls 310
                 +f+ s
  CTQ26399.1 264 KFMVS 268
                 ***97 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.2   8.2e-17   4.9e-13      16     217 ..      40     268 ..      22     276 .. 0.77

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 8.2e-17
                 HHHHHHHHH-..--.EEEEESSHHHHHHHHHHH...-SEEEESSH.HHHHHHHHGGGGG................GG-EEEEEEEEEEEESTT-.TT-- CS
  SBP_bac_11  16 laaaFeahtg..vk.vevsaggsgklarqiadga.rpDvwipassawlellaaaglvqa................esavplassplviavpkgn.pkki 93 
                 + +aFea+ g  +k v+++ g s   + ++++++ ++Dv++  + + le++a++ l ++                ++ vp+ +   ++++ k++ ++++
  CTQ26399.1  40 VKKAFEAECGceLKfVALEDGVSLLNRLRMEGKNsKADVVLGLDNNLLEAAAQSKLFAKsnvpasavsvpggwdnDTFVPYDYGYFAFVYDKNKlANPP 138
                 56677777773322134444444433334444447******9999******999999955666666666666666666666666677777666656799 PP

                 -SHHHHHH.S.S--EEEE--T-TTTTHH.HHHHGGG.--..HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEHHHHH.....HSTTSSEEEE-- CS
  SBP_bac_11  94 kgwadLlk.p.glklavadPttspsGlaalalleaa.ga..qellkalekkvvklgessrqlltaveageadagivyeseakaa...engdkleavylp 184
                 k++++L   p ++++++ dP+ts+ Gl  l  +++  g+  +e +++l+ k+v+ +++ + ++  +  ge d++++y ++ +++   e++d+  a    
  CTQ26399.1 139 KSLKELVEgPqKWRVIYEDPRTSTPGLGLLLWMQKVyGDqaPEAWQKLAAKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHmieEKKDNYAAASFA 237
                 ******996269***************5554444432445699**********999999******************99887777878999******** PP

                 TTT--...EEEEEEEE-TT--HHHHHHHHHTTS CS
  SBP_bac_11 185 eglnldpldypaavlkkaakreaAraFlafLrs 217
                 eg +l   + +aa ++ ++++e A++Fl+f+ s
  CTQ26399.1 238 EGHYL--QVEVAARTAASKQPELAEKFLKFMVS 268
                 ****9..455678*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2468.44
//
Query:       CTQ26400.1  [L=551]
Description: DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-42  142.0   5.9    1.7e-41  141.0   5.9    1.5  1  SgrR_N     Sugar transport-related sRNA regulator N-term
    7.4e-18   64.7   0.0    2.3e-17   63.0   0.0    1.8  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f
  ------ inclusion threshold ------
      0.075   13.0   0.2       0.16   12.0   0.2    1.6  1  HTH_Crp_2  Crp-like helix-turn-helix domain
       0.13   12.7   0.0       0.36   11.2   0.0    1.7  1  Rrf2       Transcriptional regulator


Domain annotation for each model (and alignments):
>> SgrR_N  Sugar transport-related sRNA regulator N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.0   5.9   3.9e-45   1.7e-41       1     115 []       5     118 ..       5     118 .. 0.99

  Alignments for each domain:
  == domain 1  score: 141.0 bits;  conditional E-value: 3.9e-45
      SgrR_N   1 rleeqyerLlqhfegkevevtLqelAdvlfCsrRhartlLkkmqeegwleWqpevGRgkrsrLtfllepeelqeqlaeklleqgkiekalalldkdkaa 99 
                 rl++q++rL+q ++gk++e+tL+elA++l CsrRh+rtlL+ m+++gwl+W++e+GRgkrsrLtfl++  +lq+q+ae+lleq++i+++++l++ dkaa
  CTQ26400.1   5 RLQQQFIRLWQCCDGKSQETTLNELAEMLSCSRRHMRTLLNMMESRGWLTWEAEAGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVG-DKAA 102
                 799*******************************************************************************************.**** PP

      SgrR_N 100 lakllksklgvsfqeg 115
                 ++++l s+lg+sf++g
  CTQ26400.1 103 VRQMLVSHLGRSFRQG 118
                 *************986 PP

>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   5.1e-21   2.3e-17       3     162 ..     165     306 ..     163     398 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 5.1e-21
                 EESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTTTTTHCHHHHHHHG CS
   SBP_bac_5   3 vpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnalfltllaavpasia 101
                 + ++A  w+      ++++f LR+g+ F+ G +l  +Dv++s++r    +  s          +i+++e +   t+ ++l +p+  ++ ll +vpa + 
  CTQ26400.1 165 EADIAHHWQ--QLSPTHWRFFLRPGIHFHHGRELEMADVIASLQRSNALPLYS----------HIERIESPTAWTLDIHLRQPDRWLPWLLGQVPAMVL 251
                 566777743..445579**************************9975555444..........369********************************* PP

                 CCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.S CS
   SBP_bac_5 102 kkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipd 162
                     ++e+++ + +   pvgtGPY +++ ++ +++++ +++dY+ g ++ +d+++++v p+
  CTQ26400.1 252 ----PQEWQTMNHFSSMPVGTGPYAVVRNNQ-NQLKIHAFEDYF-GYRALIDEVNVWVLPE 306
                 ....9***********************999.89**********.************9965 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   3.5e-05      0.16      22      52 ..      24      54 ..       4      67 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.5e-05
                HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilseLkreglis 52
                 t  elA+ml  +r ++  +l+ ++ +g+++
  CTQ26400.1 24 TTLNELAEMLSCSRRHMRTLLNMMESRGWLT 54
                5779*************************97 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     8e-05      0.36      23      56 ..      21      54 ..      12      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8e-05
                CC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        Rrf2 23 eepvsseeiaerqnispsylekilakLrkaglvk 56
                ++  +++e+ae+ + s+++++ +l++++  g+++
  CTQ26400.1 21 SQETTLNELAEMLSCSRRHMRTLLNMMESRGWLT 54
                44589**************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3976.01
//
Query:       CTQ26401.1  [L=394]
Description: broad specificity sugar efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-39  136.1  67.5    4.8e-27   94.8  31.7    2.0  2  MFS_1          Major Facilitator Superfamily
    3.4e-07   29.4  22.8    3.5e-05   22.8  10.2    2.3  2  MFS_1_like     MFS_1 like family
    4.1e-05   22.3  27.3    4.1e-05   22.3  27.3    2.9  2  MFS_2          MFS/sugar transport protein
    0.00016   20.8  25.2    0.00023   20.3  25.2    1.2  1  Nuc_H_symport  Nucleoside H+ symporter
  ------ inclusion threshold ------
      0.068   12.6   2.0       0.22   11.0   2.0    2.0  1  DUF3112        Protein of unknown function (DUF3112)
        2.7    8.0   9.0       0.55   10.2   0.5    3.4  3  MerE           MerE protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8  31.7   1.6e-30   4.8e-27       2     295 ..      19     304 ..      18     308 .. 0.89
   2 !   55.1  27.9   1.9e-18   5.7e-15       1     166 [.     222     386 ..     222     392 .. 0.95

  Alignments for each domain:
  == domain 1  score: 94.8 bits;  conditional E-value: 1.6e-30
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslw.lllvlrvlqGlg 98 
                 +l+af+++ a ++ +p+l+l+l+++ g++p  +gl +t+ a++ ++ sl l+  sd  G rr l++   l+a+g +ll++f + ++ +l+ + v+ +  
  CTQ26401.1  19 MLVAFMMGVAGALQAPTLSLFLSREVGAQPFWVGLFYTVNAIAGILVSLWLAKRSDSRGDRRRLIMFCCLMAVGnALLFAF-NRHYlTLITCGVMLASI 116
                 7999*****************************************************9*7776666666777775677778.888889******99999 PP

       MFS_1  99 agalfpagaaliadwfpkeergrai..gllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpap 195
                 a a++p   al+++++  + r  ++  +++ a  sl+ ++gp+l+ +la ++g++ +f i+a+++++++   l+ +  + ++r  ++++e       a+
  CTQ26401.1 117 ANAAMPQLFALAREYADSSAREVVMfsSVMRAQLSLAWVIGPPLAFMLALNYGFTTMFSIAAGIFVISLA--LIAIKLPSVPRVEQPSEEA------AA 207
                 9*****************888887777*****************************************55..5888888888888888888......33 PP

       MFS_1 196 lvp..awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalgla 292
                 l++  +w+    +     l+ia+ l++++++++ + +pl++ ++lgl+   lag+l++ +a + +++++lag++++r+g+r++++ a+++++l+++gl+
  CTQ26401.1 208 LAQagGWQDKNVRM----LFIASTLMWTCNTMYIIDMPLWISSDLGLP-DSLAGILMGTAAGLEIPAMILAGYYVKRFGKRKMMVAAVAAGVLFYAGLI 301
                 33312244433333....******************************.69************************************************ PP

       MFS_1 293 lla 295
                 l+ 
  CTQ26401.1 302 LFH 304
                 986 PP

  == domain 2  score: 55.1 bits;  conditional E-value: 1.9e-18
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlg 98 
                 l++a  l+ +  +++++ +pl++++dlg+  s +g+l+++ a + + a++++G+ + rfG r+++++++++ +l+ + l+lf ++ ++ll+l ++ +++
  CTQ26401.1 222 LFIASTLMWTCNTMYIIDMPLWISSDLGLPDSLAGILMGTAAGLEIPAMILAGYYVKRFGKRKMMVAAVAAGVLFyAGLILF-HGRTALLALQLFNAIF 319
                 689999999999***************************************************************5555558.9999************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv 166
                  g+++ +g+ ++ d+ p+ + g a+ l++ ++s G+il+ +  g+l++s+g  +v++ +a++sl+ + 
  CTQ26401.1 320 IGIIAGIGMLWFQDLMPG-RAGAATTLFTNSISTGVILAGVMQGALSQSYGHASVYWTIAAISLVTLF 386
                 ******************.**********************************************944 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   4.3   1.4e-05     0.043     226     310 ..      14     100 ..       7     141 .. 0.78
   2 !   22.8  10.2   1.2e-08   3.5e-05     180     360 ..     171     353 ..     151     377 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
  MFS_1_like 226 eviifllvalilgmswgiienFlflYL.kelgasntllGslvalgvvaeipl.fffaeklleklGhvklliiallayilrfllyaii 310
                  +++f+lva+++g++ ++    l+l+L  e+ga  + +G + ++ ++a i + +++a++   +   ++l++++ l+ +   ll a+ 
  CTQ26401.1  14 VYAAFMLVAFMMGVAGALQAPTLSLFLsREVGAQPFWVGLFYTVNAIAGILVsLWLAKRSDSRGDRRRLIMFCCLMAVGNALLFAFN 100
                 689************************99*****************99876538888888888888888888888777776666666 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.2e-08
  MFS_1_like 180 sallyvlaallvisllvvli.lnetekesklkvtkslqvllnilknpeviifllvalilgmswgiienFlflYL.kelgasntllGslvalgvvaeipl 276
                  +++ ++a+++visl++++i l+     ++    +   +     ++++v +++++ +++ +++ ++   + l++ ++lg + +l+G+l+   + +eip 
  CTQ26401.1 171 TTMFSIAAGIFVISLALIAIkLPSVPRVEQPSEEAAALAQAGGWQDKNVRMLFIASTLMWTCNTMYIIDMPLWIsSDLGLPDSLAGILMGTAAGLEIPA 269
                 45778888888888776543233333222222222223345567899999999999999999999999999**999*********************** PP

  MFS_1_like 277 fffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfg 360
                  ++a + ++++G +k++++a+ a +l + ++ +++    +l ++++++i +g++ ++++ + ++++p ++ a +  + ++++ g
  CTQ26401.1 270 MILAGYYVKRFGKRKMMVAAVAAGVLFYAGLILFHGRTALLALQLFNAIFIGIIAGIGMLWFQDLMPGRAGAATTLFTNSISTG 353
                 *********************************************************************998876555555444 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3  27.3   1.4e-08   4.1e-05       5     331 ..      21     325 ..      17     336 .. 0.74
   2 ?    2.7   5.2     0.013        38     228     304 ..     308     386 ..     306     391 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.4e-08
       MFS_2   5 galaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfiwllvt 103
                  a+  +++++l a  l+ F++  +g ++++vgl++ v  +  +++   ++    +++ r  rrr +++++  ++av+ +llf+           +l+++
  CTQ26401.1  21 VAFMMGVAGALQAPTLSLFLSREVGAQPFWVGLFYTVNAIAGILVSLWLAK---RSDSRGDRRR-LIMFC-CLMAVGNALLFAFNR-------HYLTLI 107
                 555566777777778999****************98888888877775554...4444444777.55555.567889999999866.......355555 PP

       MFS_2 104 yillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvl..aailafllvlilgglkserkgylifaliialLmllgviivvlgtkervemr 200
                  ++  ++ + +  + +  + +l+++y + +s+  v +f+sv+  +l  a ++ ++l+++l+     + g++++ +i a +++++  ++++   +   + 
  CTQ26401.1 108 TCG--VMLASIANAAMPQLFALAREYAD-SSAREVVMFSSVMRAQLslAWVIGPPLAFMLAL----NYGFTTMFSIAAGIFVISLALIAIKLPSVPRV- 198
                 555..33333333333334456688888.667777777777666541134566677777776....9*****************99998887766544. PP

       MFS_2 201 kkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgall 298
                    +++++e+  l ++ +   +++  ++l+++  l +++ +++   + + +   lg  +s a ++++++  + + +++l+ + +kr+gk+++++++ ++
  CTQ26401.1 199 ---EQPSEEAAALAQAGG--WQDKNVRMLFIASTLMWTCNTMYIIDMPLWISSDLGlPDSLAGILMGTAAGLEIPAMILAGYYVKRFGKRKMMVAAVAA 292
                 ...444444444444433..46788*******************************999**************************************** PP

       MFS_2 299 tivllvlvlllqpsnlllflvllviagfgvgva 331
                  ++++++++l++ +  ll+l l+ ++++g+++ 
  CTQ26401.1 293 GVLFYAGLILFHGRTALLALQLFNAIFIGIIAG 325
                 ***********6666666666665655555543 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.013
       MFS_2 228 illllfllaalalgvlnglllYyltyvlg..ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllv 304
                 +ll+l l++a  +g+ +g+ ++ +++ +   +g+a ++f+  + ++++l+ ++  +l + +g   +y   a++ +v l+
  CTQ26401.1 308 ALLALQLFNAIFIGIIAGIGMLWFQDLMPgrAGAATTLFTNSISTGVILAGVMQGALSQSYGHASVYWTIAAISLVTLF 386
                 6999**************999999999966566666667777799999999***********98766555554444433 PP

>> Nuc_H_symport  Nucleoside H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3  25.2   7.8e-08   0.00023      22     314 ..      33     323 ..      14     390 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7.8e-08
  Nuc_H_symport  22 lvklfsylsktl.faaaeiglvysslgiaailspilvgiiaDkflsaervlavlhligavvlflaaqvtefealflv..lLv.yslaymPtl.alt 112
                    +++l ++ls     ++  +gl y+  +ia il    + + +D     +r+++ + l++    +l a++ ++ +l ++  +L+  + a mP l al+
     CTQ26401.1  33 APTLSLFLSREVgAQPFWVGLFYTVNAIAGILVSLWLAKRSDSRGDRRRLIMFCCLMAVGNALLFAFNRHYLTLITCgvMLAsIANAAMPQLfALA 128
                    67899999987669999**************************9999999999877665555555666666666655214431345689*875999 PP

  Nuc_H_symport 113 nsiafanlrDvvtdfprirvlGtvGfilaslaflllvvsladlelsrlqlliaagvsll.lavyaltLPkiPakkkakqslkkllgldafvLlknk 207
                       a +  r+vv   + +r    + +++   + l ++++l      + ++ iaag+ ++ la+ a+ LP +P  ++ +++ + l+        ++k
     CTQ26401.1 129 REYADSSAREVVMFSSVMRAQLSLAWVIG--PPLAFMLALN-YGF-TTMFSIAAGIFVIsLALIAIKLPSVPRVEQPSEEAAALAQ---AGGWQDK 217
                    999999999*99988999**********9..4333333332.223.3457788877655599**********55555555555444...45679** PP

  Nuc_H_symport 208 rllvfflvslllavvlqiyyvfanafLtevakivvklasillslsqvaeilfiLtlpfflkrfGikkvlllslvaaalrfalfaygaddepvgvvl 303
                    ++ ++f+ s l+     +y +    ++ +  ++   la il+  +   ei  +++ ++++krfG +k+++ ++ a +l +a  + +    +  ++l
     CTQ26401.1 218 NVRMLFIASTLMWTCNTMYIIDMPLWISSDLGLPDSLAGILMGTAAGLEIPAMILAGYYVKRFGKRKMMVAAVAAGVLFYAGLILF-HGRTALLAL 312
                    ***********999998888888889999999***********************************999999999*****99999.788889999 PP

  Nuc_H_symport 304 llLslivyGva 314
                    +l++ i  G+ 
     CTQ26401.1 313 QLFNAIFIGII 323
                    99998888874 PP

>> DUF3112  Protein of unknown function (DUF3112)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.0   7.3e-05      0.22       3      73 ..      91     162 ..      90     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.3e-05
     DUF3112   3 tGsrklfwvvmlllylvvigvvvmtivasvvpylyflsekhy.emckkvvkassvliilysllavalillay 73 
                 +G++ lf +    l l+ +gv++ +i ++++p l+ l ++   +++++vv++ssv+    sl  v+   la+
  CTQ26401.1  91 VGNALLFAFNRHYLTLITCGVMLASIANAAMPQLFALAREYAdSSAREVVMFSSVMRAQLSLAWVIGPPLAF 162
                 69999*******************************987755156899*******98888877665555555 PP

>> MerE  MerE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.6   4.8e+03      60      68 ..     178     186 ..     166     190 .. 0.77
   2 ?    1.5   0.4     0.093   2.8e+02      30      63 ..     263     296 ..     250     303 .. 0.68
   3 ?   10.2   0.5   0.00019      0.55      34      66 ..     355     389 ..     343     393 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.6
        MerE  60 tGlfvlsla 68 
                 +G+fv+sla
  CTQ26401.1 178 AGIFVISLA 186
                 589999987 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.093
        MerE  30 chlpilaivlaGttaGaflgeywviaalaltGlf 63 
                   l i a++laG     f     ++aa+a   lf
  CTQ26401.1 263 AGLEIPAMILAGYYVKRFGKRKMMVAAVAAGVLF 296
                 3466667888888888887777777777776666 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00019
        MerE  34 ilaivlaGttaGaf..lgeywviaalaltGlfvls 66 
                 ila v+ G+ + ++   + yw+iaa++l  lf+ s
  CTQ26401.1 355 ILAGVMQGALSQSYghASVYWTIAAISLVTLFLTS 389
                 45555555444333225679************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 2898.29
//
Query:       CTQ26402.1  [L=436]
Description: putative glucarate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-55  187.9  55.8    6.9e-54  183.1  29.1    1.9  2  MFS_1     Major Facilitator Superfamily
    1.1e-06   27.8  34.3     0.0013   17.7  16.5    3.5  3  Sugar_tr  Sugar (and other) transporter
    0.00011   21.6  17.6      0.001   18.5   1.0    2.1  2  MFS_4     Uncharacterised MFS-type transporter YbfB
    0.00032   20.5   2.0    0.00032   20.5   2.0    1.9  2  DUF3464   Photosynthesis affected mutant 68
  ------ inclusion threshold ------
       0.11   12.6   1.6         12    6.2   0.1    3.3  3  ARL6IP6   Haemopoietic lineage transmembrane helix


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.1  29.1   1.9e-57   6.9e-54       2     353 .]      31     392 ..      30     392 .. 0.84
   2 !   18.8  18.7   1.8e-07   0.00063      62     172 ..     317     426 ..     315     433 .. 0.72

  Alignments for each domain:
  == domain 1  score: 183.1 bits;  conditional E-value: 1.9e-57
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlga 99 
                 ++++++++l+r+ilg+++p  l+++ +i+p+ +g++++++a+++a+a++p+G + drfG + ++ l++++++l+ +ll  f+ +l  ll+lr+  G+ +
  CTQ26402.1  31 SVGTMINYLDRTILGIVAP-QLSKEIHIDPAMMGIIFSAFAWTYALAQIPGGMFLDRFGNKVTYALSIFFWSLF-TLLQsFTLGLKSLLLLRLGLGVSE 127
                 6899***************.8*****************************************************.777768756666************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 +  fpa   +++ wfp+ er+ra++ +++g  +G +   +l  l++++ gWr +f++ +++++l+ ++ ++ ++ ep+e+++ +++e+e          
  CTQ26402.1 128 APCFPANSRIVSTWFPQHERARATATYTVGEYIGLAAFSPLLFLILEHHGWRTLFFLTGGLGILFTLV-WWRFYHEPHESRTANQAELEyiganrinnk 225
                 ***********************************888888888889*****************9885.566668888888888999999**9999999 PP

       MFS_1 189 kgtgpaplvpawkallkdpvlwillialllfffgfsg...lltllplylqevlglsglllaglllallalvgailallagrlsdr.........lgrrr 275
                  + +p+++++a ++l  ++    +l a+l+ f+g+++   +lt++p+yl   ++l+ +l +g++   ++l++ai+ l++g++sdr         ++r+ 
  CTQ26402.1 226 IQNVPFNWRDARRLLGCRQ----ILGASLGQFAGNTTlvfFLTWFPSYLANERHLP-WLHVGFFATWPFLAAAIGILFGGWISDRllkrtgsvnISRKL 319
                 9999999999888888888....66666666666666667****************.****************************87776553333333 PP

       MFS_1 276 rlllallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 +++ +lll +++ ++  + a++  +v++  ++  + f g+g+ +++ ++l+sd ap+++ag   g+fn++ + +++++p
  CTQ26402.1 320 PIISGLLLSSCIIAANWVSANS--TVII--IMS-VAFfGQGM-VGLGWTLISDIAPENMAGLTGGIFNFCANMASIIAP 392
                 3333333333333333333333..3333..333.44437776.699*******************************98 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.8e-07
       MFS_1  62 rrvlllglllfalglllll.fa.sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.Wravfyil 157
                 r++ +++ ll++++ ++++ ++ +++++++++ v  ++++ +++ +g +li+d++p++  g+  g+++ ++++++i++pl+ g+++s+ g + ++ + +
  CTQ26402.1 317 RKLPIISGLLLSSC-IIAAnWVsANSTVIIIMSV--AFFGQGMVGLGWTLISDIAPENMAGLTGGIFNFCANMASIIAPLIIGVIISATGnFFYALIYV 412
                 56556677777777.6777886566664444444..55555678899999************************************8877555555555 PP

       MFS_1 158 aivsllafvlfllll 172
                 ++ +l++ v++++++
  CTQ26402.1 413 GLTALIG-VIAYIFI 426
                 5555555.4455554 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   6.3   1.3e-05     0.046      46     436 ..      60     199 ..       2     214 .. 0.52
   2 !    4.0   0.3    0.0053        19      46      78 ..     279     311 ..     249     334 .. 0.67
   3 !   17.7  16.5   3.6e-07    0.0013     346     438 ..     335     427 ..     321     429 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyq 144
                   +g+i+s+f    ++ ++ +g++ drfG+k +++ ++++ +  ++lq ++     +  l++ R+ +G++   +    +  +s   p++ R + +  y 
  CTQ26402.1  60 AMMGIIFSAFAWTYALAQIPGGMFLDRFGNKVTYALSIFFWSLFTLLQSFTL---GLKSLLLLRLGLGVSEAPCFPANSRIVSTWFPQHERARATATYT 155
                 2455555555555555555555555555555555555555555555555555...45555555555555555555555555555555555555555555 PP

                 HHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HT CS
    Sugar_tr 145 laitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeeekaswk 243
                 ++  +G  +aa++ l +   +   gwr l++l+  +                                                               
  CTQ26402.1 156 VGEYIG--LAAFSPLLFLILEH-HGWRTLFFLTGGLG-------------------------------------------------------------- 189
                 555555..45555555544444.45555555555555.............................................................. PP

                 THHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHT CS
    Sugar_tr 244 ellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllv 342
                                                                                                                    
  CTQ26402.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

                 TSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 343 akskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfff 436
                                                                                                     +lf+++ + f
  CTQ26402.1 190 ------------------------------------------------------------------------------------ILFTLVWWRF 199
                 ....................................................................................5555555554 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0053
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkks 78 
                 + +g+++   ++ a+iG lf+g+++dr+ ++ +
  CTQ26402.1 279 LHVGFFATWPFLAAAIGILFGGWISDRLLKRTG 311
                 556788888888889999999999988754443 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 3.6e-07
                 ...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS- CS
    Sugar_tr 346 kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvp 438
                 ++ s  ++v i++ +a+f+ g+ ++ w l+s+++p+++ +++  i  ++ ++a+++  l++ +i +a g++++ l+++gl +l  ++ ++f++
  CTQ26402.1 335 NWVSANSTVIIIMSVAFFGQGMVGLGWTLISDIAPENMAGLTGGIFNFCANMASIIAPLIIGVIISATGNFFYALIYVGLTALIGVIAYIFII 427
                 4888889***********************************************************************************985 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   1.0   2.8e-07     0.001      15     181 ..      47     212 ..      39     226 .. 0.83
   2 !    8.1   9.7   0.00041       1.5     230     360 ..     285     421 ..     250     425 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.8e-07
       MFS_4  15 iLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaa 113
                 + P+l +e +++++ +g++ +a +  Y +  +   + l +  ++++   +++   l +l  ++t ++  +ll+R+++Gv+ A  + + s +v     ++
  CTQ26402.1  47 VAPQLSKEIHIDPAMMGIIFSAFAWTYALAQIPGGMFLDRFGNKVTYALSIFFWSLFTLLQSFTLGLKSLLLLRLGLGVSEAPCFPANSRIVSTWFPQH 145
                 6799999999999999999999999999888888888888888898888999999999999**********************************9*** PP

       MFS_4 114 rrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaa 181
                 +r+r  a    G  +G a+ + l  l+l+++ ++ +l ++++ l ++ +l+ +    + ++   +++a
  CTQ26402.1 146 ERARATATYTVGEYIGLAAFSPLLFLILEHH-GWRTLFFLTGGLGILFTLVWWRFYHEPHESRTANQA 212
                 *****************99777776666554.455579999999999999888888854444444444 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00041
       MFS_4 230 llWll..vGlaaivgvlvwlrvakrsglrrala.....aallieavgvllslls.psplglivssvllGltflaitalvlqlarelappatrrll.glm 319
                 + W+   + ++++ g +++ r+ kr+g  ++ +       ll+ ++ +++  +s +s + +i+s+  +G    +++ l+ +l+  +ap++   l  g+ 
  CTQ26402.1 285 ATWPFlaAAIGILFGGWISDRLLKRTGSVNISRklpiiSGLLLSSCIIAANWVSaNSTVIIIMSVAFFGQ---GMVGLGWTLISDIAPENMAGLTgGIF 380
                 4565411456788899999999999987555431111134666666666665541566777777777775...788999**********9976661566 PP

       MFS_4 320 TasfgigQilGpllasllaeatgslalallvaaaalvlaal 360
                   +  +  i++pl+++++ +atg++ +al+  +  ++++++
  CTQ26402.1 381 NFCANMASIIAPLIIGVIISATGNFFYALIYVGLTALIGVI 421
                 7788899***********************77777777655 PP

>> DUF3464  Photosynthesis affected mutant 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.92   3.3e+03      91     115 ..     275     299 ..     252     305 .. 0.68
   2 !   20.5   2.0   9.1e-08   0.00032      55     142 ..     302     389 ..     300     393 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.92
     DUF3464  91 dlptwvvllvslvlFglgvlGlsYG 115
                 +lp + v +  +  F ++++G+ +G
  CTQ26402.1 275 HLPWLHVGFFATWPFLAAAIGILFG 299
                 4677777777788899999999887 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 9.1e-08
     DUF3464  55 VskRmirRvalfsGiPlalGlat.fvvfylivskelvdlptwvvllvslvlFglgvlGlsYGvlSasWdeereGsllGleefkknwgrl 142
                 +s+R+++R + ++ i   l + + + ++ +i++ ++v + ++v++++s+++Fg g++Gl + ++S    e+  G + G+ +f  n+ ++
  CTQ26402.1 302 ISDRLLKRTG-SVNISRKLPIISgLLLSSCIIAANWVSANSTVIIIMSVAFFGQGMVGLGWTLISDIAPENMAGLTGGIFNFCANMASI 389
                 6788888876.44444444433315678999**********************************999999999999999999998776 PP

>> ARL6IP6  Haemopoietic lineage transmembrane helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.89   3.2e+03      38      56 ..      31      49 ..      16      54 .. 0.74
   2 ?    3.6   0.1     0.021        75      26      43 ..      56      73 ..      48      82 .. 0.82
   3 ?    6.2   0.1    0.0032        12      22      46 ..     385     412 ..     376     420 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.89
     ARL6IP6 38 aFsyglvYlDsavPGvsPP 56
                +    + YlD  + G++ P
  CTQ26402.1 31 SVGTMINYLDRTILGIVAP 49
                4455789999999999887 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.021
     ARL6IP6 26 klspllaGllvaaFsygl 43
                ++ p ++G++ +aF+++ 
  CTQ26402.1 56 HIDPAMMGIIFSAFAWTY 73
                5789************84 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0032
     ARL6IP6  22 qlasklspllaGllvaa...FsyglvYl 46 
                 ++as + pl++G++++a   F+y+l+Y+
  CTQ26402.1 385 NMASIIAPLIIGVIISAtgnFFYALIYV 412
                 58999*********985555*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3201.30
//
Query:       CTQ26403.1  [L=298]
Description: Transcriptional regulator, LysR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-33  113.3   0.0    1.3e-32  112.9   0.0    1.2  1  LysR_substrate  LysR substrate binding domain
    1.1e-17   63.6   0.0    2.2e-17   62.7   0.0    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.03   14.6   0.0       0.17   12.2   0.0    2.0  2  Ribosomal_S6    Ribosomal protein S6


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9   0.0   2.2e-36   1.3e-32       4     203 ..      89     289 ..      86     293 .. 0.93

  Alignments for each domain:
  == domain 1  score: 112.9 bits;  conditional E-value: 2.2e-36
                     SCEEEEEEEECCCHHHHHHHHHHHHHH..HSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG..SS CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfra..ryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar..ge 94 
                      +  +ri+++ t+++y++p+l+ ++    +  +v+++ ++g+s +ll+ l++g++Dlai++   +++++++ p+ +++lv+v ++dhpLar  + 
      CTQ26403.1  89 NKENIRIAFIYTMGEYVVPQLINKYSLspECHNVTFSFTQGTSLTLLQELKAGKVDLAICSYIADEPDIDFIPVIQQELVVVTAKDHPLARlyEH 183
                     56789*****************99854225667************************************************************99 PP

                     SECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEE CS
  LysR_substrate  95 pvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyr 188
                     +v+l +  ++p i ++e+sglr ++++++ +++l p++a+ v++  a+++lv+   Gia++pr ++       ++ +l +++ ++p r +yl++ 
      CTQ26403.1 184 EVDLVETIHYPYIYFSENSGLRPFIDNVFMQQKLVPEIACYVDEDTAMAGLVSIDYGIAIMPRITALS---YYNVHILKIKN-TIPpRYIYLATM 274
                     *****************************************************************755...5557779****.7777******** PP

                     TTCCCHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidf 203
                     k++ lspa++ f + 
      CTQ26403.1 275 KDKGLSPALESFKNV 289
                     **********99765 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   3.7e-21   2.2e-17       1      59 [.       3      61 ..       3      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 3.7e-21
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l+ql +f+ + e+++ t+AA  L ++qp++s++i++LE+elgv Lf R+gr+++ T+ G
  CTQ26403.1  3 LKQLYYFKRLSETEHYTEAASSLCITQPSLSHAISELEKELGVALFARQGRNVKITQNG 61
                689******************************************************99 PP

>> Ribosomal_S6  Ribosomal protein S6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.9e-05      0.17       5      49 ..      25      68 ..      23      90 .. 0.90
   2 ?   -0.1   0.0      0.19   1.1e+03      35      64 ..      95     127 ..      68     140 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
                  EEEE-TTS-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEEEEE CS
  Ribosomal_S6  5 vfilrpelseeevkelvekvgklilenggvvrkveswGkrkLayp 49
                  ++i++p+ls+ +++el +++g ++ +++g  +k+++ Gkr L+y 
    CTQ26403.1 25 LCITQPSLSH-AISELEKELGVALFARQGRNVKITQNGKRFLPYV 68
                  79******95.********************************95 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.19
                   EEEEEEEEEEEEEEEETTE...EEEEEEEEEEE CS
  Ribosomal_S6  35 vrkveswGkrkLaypikkk...teGyyvlmnfd 64 
                   +  +  +G+   ++ i+k+    e + v+++f+
    CTQ26403.1  95 IAFIYTMGEYVVPQLINKYslsPECHNVTFSFT 127
                   334556899999999999988877787777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2348.91
//
Query:       CTQ26404.1  [L=251]
Description: 3-dehydroquinate dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-74  250.1   0.0    3.5e-74  249.9   0.0    1.0  1  DHquinase_I  Type I 3-dehydroquinase
     0.0072   16.6   0.1      0.018   15.3   0.0    1.6  2  Imm75        Putative Immunity protein 75
  ------ inclusion threshold ------
      0.036   14.3   0.5       0.18   12.1   0.1    2.2  2  AlkA_N       AlkA N-terminal domain
      0.051   13.3   0.0      0.091   12.5   0.0    1.5  1  DUF4483      Domain of unknown function (DUF4483)


Domain annotation for each model (and alignments):
>> DHquinase_I  Type I 3-dehydroquinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.9   0.0   7.8e-78   3.5e-74       1     228 [.      20     246 ..      20     247 .. 0.97

  Alignments for each domain:
  == domain 1  score: 249.9 bits;  conditional E-value: 7.8e-78
                  EEEE--SSHHHHHHHHHHHTT.S-SEEEEEGGG-.TT.THHHHHHHHHHHHHH.TTS-EEEE---GGGT-S.SSS-HHHHHHHHHHHHHCT-.SEEEE CS
  DHquinase_I   1 cvpitgktleeilaelesgke.kaDlvElRlDllketseaedvseeleelrst.sdlpliftlrtkaeggrfkrkseeeylellrtaielga.dyvDv 95 
                  cvp+ gktl+eil  ++ + + +aD++E+R+D++++ +e+ +v  +l+e+r   + lpl+ft+r+k+egg+  + s+e+y+ l+r+a+++g+ d++D+
   CTQ26404.1  20 CVPLIGKTLDEILGNAHGLVDaGADIIEWRVDHFAQVREMAQVMAALAEIRGAlKALPLLFTFRSKKEGGET-ELSDEAYFALNREAARSGLvDVIDI 116
                  *******************999************99888999***********99****************6.9************************ PP

                  EGG-.HHG.HHHHHHHHHHHTT-EEEEEEEESS----HHHHHHHHHHHHHTT-SEEEEEE--SSHHHHHHHHHHHHHHHHHT-SS-EEEEE-TTTTGH CS
  DHquinase_I  96 Elteapee.skkrlieekreggtkvIvSyhdfegtpsaeelkallekmqalgaDivKiavmaksieDvlrllsltseakeekdeaplIamamGelGki 192
                  El+  ++e + ++l+++++ +g+kvI+S+hdf++tp++e+++ +l++mq+lgaD++Kiavm++s +Dvl+ll++t ++ke+++++plI+m+mG+ G +
   CTQ26404.1 117 ELF--NDEaQIRSLVDDAHAAGVKVIMSNHDFHKTPAQEDIIYRLRRMQDLGADLPKIAVMPQSPQDVLTLLAATLTMKEKYATRPLITMSMGKSGGV 212
                  **9..5556889**********************************************************************9*************** PP

                  HHCHHHHHTB-EEEEESSS-..SSTT-EEHHHHHHH CS
  DHquinase_I 193 SRilgevfGspvtfasleeakasapGqltarelrei 228
                  SR+ g++fGs++tf+++++a  sapGq+ +++lre+
   CTQ26404.1 213 SRVTGRLFGSAMTFGTVGQA--SAPGQIAIAKLREV 246
                  ****************7777..************97 PP

>> Imm75  Putative Immunity protein 75
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.9e-06     0.018       6      75 ..     100     168 ..      96     172 .. 0.84
   2 ?   -3.1   0.0       2.3     1e+04      30      44 ..     196     210 ..     188     227 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.9e-06
       Imm75   6 alkrellpgvtifidsvrleaiddkad.rlmvttsvgeearlvyfnpdfagtptfgrrlyrlrdwtddlad 75 
                 al+re     + ++d + +e  +d+a+ r +v  +     +++  n df  tp+    +yrlr   d  ad
  CTQ26404.1 100 ALNREAA--RSGLVDVIDIELFNDEAQiRSLVDDAHAAGVKVIMSNHDFHKTPAQEDIIYRLRRMQDLGAD 168
                 6666643..345789999******997689999999***************************98886665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.3
       Imm75  30 kadrlmvttsvgeea 44 
                  a r ++t s+g+  
  CTQ26404.1 196 YATRPLITMSMGKSG 210
                 567788888888765 PP

>> AlkA_N  AlkA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.31   1.4e+03      75      95 ..      53      73 ..      30      84 .. 0.70
   2 ?   12.1   0.1     4e-05      0.18      51      92 ..     132     173 ..     105     190 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.31
      AlkA_N 75 iarvrrllDLdadpeaieaaL 95
                 a+vr++  + a  ++i+ aL
  CTQ26404.1 53 FAQVREMAQVMAALAEIRGAL 73
                456666666666666666666 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4e-05
      AlkA_N  51 rhepeksalkvrlslsdlraleaviarvrrllDLdadpeaie 92 
                 +h++  +++  + ++++++a e +i r+rr+ DL ad  +i+
  CTQ26404.1 132 AHAAGVKVIMSNHDFHKTPAQEDIIYRLRRMQDLGADLPKIA 173
                 33333334444445578888899**************99996 PP

>> DUF4483  Domain of unknown function (DUF4483)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     2e-05     0.091      62      98 ..      92     127 ..      57     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2e-05
     DUF4483  62 kkperDFialNksAlksGlvtakeqreyRqehhdirv 98 
                 + +++ + alN++A++sGlv+  +++ + +e  +ir 
  CTQ26404.1  92 ELSDEAYFALNREAARSGLVDVIDIELFNDE-AQIRS 127
                 4567789*********************988.66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2108.78
//
Query:       CTQ26405.1  [L=405]
Description: putative transporter; MFS superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-27   96.7  58.5    2.1e-23   82.9  43.5    2.0  2  MFS_1     Major Facilitator Superfamily
     0.0023   17.0  21.7      0.029   13.4  21.4    2.3  1  PUCC      PUCC protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9  43.5   2.3e-27   2.1e-23       2     315 ..      14     316 ..      13     318 .. 0.79
   2 !   23.5  27.7   2.5e-09   2.2e-05      37     172 ..     251     384 ..     248     402 .. 0.86

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 2.3e-27
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +l +++++++  ++++++  +l+e+ g +++ ++ +++  ++g  +a++++G+lsdrfGr++++ lg+l+++++++ +l++ +++l +v+ +++Gl+ +
  CTQ26405.1  14 YLNYLIHGMGVLLITLNMA-HLQEQWGTDAAGVSVVISSLGIGK-LATIVTGFLSDRFGRKPFIYLGILSYLIFFVGILLTKNIYLAYVFGIMAGLANS 110
                 688999*************.*****7765555555555555544.677889***********************66666679999************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafv.lfllllpeepperkrkspkeeekgtgpaplv 197
                 +l ++ + ++ + fp+   +ra+ l+ a++s+G  l p + ++l+ ++l++ ++f+i+a++++l+++ l  + +p+++ ++k ++p+ +    ++++++
  CTQ26405.1 111 FLDSGTYPALMESFPH-SASRANVLIKAFVSAGQFLLPFIISFLIwANLWFGWSFVIAAALFVLSGIyLLKMPFPDSQAAKKEEAPTAQ----AETAVR 204
                 ****************.************************************************995544445666666666666666....777777 PP

       MFS_1 198 pawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr.lgrrrrlllallllllaalglalla 295
                 p  +a + d v++  l++ +++ + f++++++l  y q+v gl+ + +a  ll+++ +++++  ++++++++  +++ +++++  +l ++++l+++l++
  CTQ26405.1 205 P--QANKLDMVIF-TLYGYIGM-ATFYLVSQWLAQYGQFVVGLP-YASAIKLLSIYTVGSLVCVFVTAAFVKEvFSSAIAMIIYTGLSMISLLLVCLFP 298
                 7..3333333442.55555555.58888****************.777777777777777777888999995537776666666666666666666666 PP

       MFS_1 296 vtssavllllvlvliGf.glg 315
                 ++   +++  + ++iGf ++g
  CTQ26405.1 299 TP---MMVTGFAFVIGFaAAG 316
                 66...7777788889996655 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 2.5e-09
       MFS_1  37 lltlyalgaavaslplGrlsdr.fGrrrvlllglllfalg.lllllfasslw.lllvlrvlqGlga.galfpagaaliadwfpkeergraigllsagfs 131
                 ll++y++g++v ++++++++   f++   +++   l+ ++ ll++lf +  + ++  + ++ G++a g+++ +ga+++a  fp   +g+a+g+++++ s
  CTQ26405.1 251 LLSIYTVGSLVCVFVTAAFVKEvFSSAIAMIIYTGLSMISlLLVCLF-P-TPmMVTGFAFVIGFAAaGGVLQLGATIMAMSFPN-GKGKATGIFYTAGS 346
                 689*************8888876999998888888888884666667.4.5768999999*****9999999999999999999.************** PP

       MFS_1 132 lGailgpllggllasslgWravfyilaivsllafvlfllll 172
                 +++   pl+ + l+ +++  +++++  ++++++fv+  +l+
  CTQ26405.1 347 IASFTIPLITAKLS-QISIASIMWFDFLIAVIGFVI--ALY 384
                 *************9.99****************996..333 PP

>> PUCC  PUCC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4  21.4   3.3e-06     0.029     164     359 ..     167     359 ..      41     391 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.3e-06
        PUCC 164 alitlvlnvlalWkievkskkkkeekeeeepslleawlklvaekqalaflaflllgtlaffmqdviLEpYgGevlgLtvgeTTkLtalfalGtlvGlll 262
                 a++ +vl+ + l k+     + ++++e+++ + + a++  +++  +++f++   +g+++f +    L  Yg  v+gL+ +   kL +++ +G lv + +
  CTQ26405.1 167 AAALFVLSGIYLLKMPFPDSQAAKKEEAPTAQAETAVRPQANKLDMVIFTLYGYIGMATFYLVSQWLAQYGQFVVGLPYASAIKLLSIYTVGSLVCVFV 265
                 5566777777777777766666666677777777777777799999***************************************************** PP

        PUCC 263 aglvlsrglkkarlaslgvllgllsflllilaallenvallvagvlllGla..sGlfavaaltlmldlaaeeraglalGaWGaaQaiaaglavllggal 359
                 ++ ++    + ++ a   ++ + ls++ l+l  l+   +++   ++++G+a  +G++  +a+ ++++   ++ +g a G+   a +ia     l+ + l
  CTQ26405.1 266 TAAFVK---EVFSSAIAMIIYTGLSMISLLLVCLFPTPMMVTGFAFVIGFAaaGGVLQLGATIMAMSF--PNGKGKATGIFYTAGSIASFTIPLITAKL 359
                 ****99...6667777777777777777778888888888888888888853379****998777765..56677777877777777765555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1075  (0.0599587); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 2761.20
//
Query:       CTQ26406.1  [L=287]
Description: quinate/shikimate 5-dehydrogenase, NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-30  103.6   0.0    9.7e-30  102.7   0.0    1.5  1  Shikimate_dh_N  Shikimate dehydrogenase substrate binding dom
      1e-12   47.6   0.5    2.1e-12   46.6   0.5    1.6  1  SDH_C           Shikimate 5'-dehydrogenase C-terminal domain
  ------ inclusion threshold ------
      0.013   15.6   0.0       0.02   15.0   0.0    1.3  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   1.6e-33   9.7e-30       1      83 []      14      96 ..      14      96 .. 0.99

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 1.6e-33
                    EEESS-TT-SHHHHHHHHHHHCTSSEEEEEEE-SCCTHHHHHHHHHHTTESEEEE-TTSCCHHHGGSSEE-HHHHHHT--SEE CS
  Shikimate_dh_N  1 viGnpikhSlSPaihnaafkalglngsyeafeveedelekaveelralglaGlnvTiPfKeaviplldelseeAkaigAvNti 83
                    +i+ pi+hS+SP +hn+af++lgl+++y afev ++el+++v+++ra +l+G+nv++P K++++++ld+ls++A+ +gAvNt+
      CTQ26406.1 14 LIATPIRHSMSPTMHNEAFAHLGLDYVYLAFEVGNQELKDVVQGFRAMKLRGFNVSMPNKTEICQYLDKLSPAAQLVGAVNTV 96
                    799*******************************************************************************8 PP

>> SDH_C  Shikimate 5'-dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.5   3.5e-16   2.1e-12       1      29 [.     257     285 ..     257     287 .] 0.93

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 3.5e-16
                 HHHHHHHHHHHHHHHHHS----HHHHHHH CS
       SDH_C   1 GLgMLveQgaeqFelWTGrepPvevMrea 29 
                 GLgM+++Qga++Fe+WTG+ +Pv+ ++  
  CTQ26406.1 257 GLGMMLWQGARAFEIWTGKQMPVDYIKSI 285
                 9***********************99866 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   3.3e-06      0.02       9      77 ..     123     197 ..     115     219 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.3e-06
                   ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESS...HHHHHHHHHHHT.E...T-EEEEGCGHHHHHHT-S CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRt...lerakelaeelkge...eiealkleelkellaead 77 
                   ++ +kk++++GaG  a+ ++ + +  gvk++ ++NR    +++a+e + +++++   ei+  +l++ ++l ae+d
    CTQ26406.1 123 DIIGKKMTVLGAGGAATALCVQAALDGVKAISIFNRRdkfFANAEETVAKIRHNtdcEIHLFDLDDHDKLRAEID 197
                   56689*************9999999***********733335666666666433111345555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2145.34
//
Query:       CTQ26407.1  [L=677]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-71  241.9   0.0    2.2e-71  240.9   0.0    1.4  2  Oxidored_FMN    NADH:flavin oxidoreductase / NADH oxidase fam
    3.6e-28   98.6   5.8    1.4e-23   83.6   1.5    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      9e-16   58.2   2.7    1.6e-08   35.0   0.3    2.6  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    4.1e-09   36.6   1.2    2.6e-05   24.3   0.0    3.0  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    4.1e-08   32.8   4.0    0.00075   18.9   0.1    2.3  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    8.1e-08   32.0   0.4    2.1e-07   30.7   0.0    1.8  2  FAD_oxidored    FAD dependent oxidoreductase
    9.1e-07   28.3   1.4    1.1e-06   28.0   0.1    1.7  2  GIDA            Glucose inhibited division protein A
    3.5e-06   26.0   8.5    6.4e-05   21.8   0.8    2.7  3  HI0933_like     HI0933-like protein
    6.9e-06   25.5   0.2      0.018   14.3   0.0    2.2  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    1.2e-05   25.7   0.7      0.006   17.0   0.1    2.8  2  NAD_binding_7   Putative NAD(P)-binding
    3.5e-05   23.8   2.6      0.062   13.2   0.6    2.3  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
    4.8e-05   22.8   0.4      0.016   14.6   0.1    2.4  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    0.00011   21.5   1.8    0.00011   21.5   1.8    1.6  2  FAD_binding_2   FAD binding domain
    0.00016   21.0   0.8      0.056   12.7   0.1    2.4  2  Thi4            Thi4 family
    0.00023   20.6   0.5       0.15   11.4   0.0    2.5  2  ThiF            ThiF family
    0.00031   20.5   1.7       0.23   11.0   0.0    2.6  2  DAO             FAD dependent oxidoreductase
    0.00039   19.7   0.1       0.19   10.8   0.0    2.2  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    0.00041   20.4   2.4      0.012   15.6   0.2    2.7  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
     0.0054   15.8   0.0      0.013   14.6   0.0    1.5  1  IMPDH           IMP dehydrogenase / GMP reductase domain
  ------ inclusion threshold ------
       0.01   15.1   0.4       0.52    9.5   0.1    2.2  2  FAD_binding_3   FAD binding domain
      0.011   15.5   0.6      0.024   14.4   0.1    1.8  2  ELFV_dehydrog   Glutamate/Leucine/Phenylalanine/Valine dehydr
      0.018   14.1   0.2      0.068   12.3   0.0    2.0  2  Dus             Dihydrouridine synthase (Dus)
      0.053   14.0   2.8        7.3    7.1   0.0    2.4  2  XdhC_C          XdhC Rossmann domain
      0.067   11.6   0.1         10    4.4   0.0    2.4  2  FMO-like        Flavin-binding monooxygenase-like
        0.1   12.2   0.2        1.1    8.8   0.0    2.4  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.23   11.5   0.9       0.48   10.5   0.9    1.5  1  TACI-CRD2       TACI, cysteine-rich domain
       0.28   10.8   1.3        3.3    7.4   0.3    2.5  2  ApbA            Ketopantoate reductase PanE/ApbA
        0.4   10.7   3.2        3.1    7.9   0.1    3.1  3  AdoHcyase_NAD   S-adenosyl-L-homocysteine hydrolase, NAD bind
       0.43   10.9   2.9        1.7    8.9   0.1    2.9  2  TrkA_N          TrkA-N domain


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.9   0.0   3.5e-74   2.2e-71       2     339 ..       7     336 ..       6     338 .. 0.85
   2 ?   -3.8   0.1       9.3   5.7e+03     207     245 ..     543     580 ..     538     596 .. 0.57

  Alignments for each domain:
  == domain 1  score: 240.9 bits;  conditional E-value: 3.5e-74
                   CCS-EEETTEEESSSEEE---.-S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESS.CCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EE CS
  Oxidored_FMN   2 LFkPikignmtLknRivmapm.trlraldkgnvledlaaeyysqraeipvtliiteaafvn.pksggfdnapgiwdeeqieewrklteavhengskv 96 
                   LF P++i  mtLknRi+m+pm t ++   +g+v++  ++eyy+ ra+++ +li  e + ++ p       + +i +++ i+ + klte  h++g+ v
    CTQ26407.1   7 LFSPLTINGMTLKNRIIMPPMgTNMAT-LNGEVSQ-EQLEYYELRAKGGTGLITIENICIDfPFASNGTTQLRIDNDQYIPRLFKLTETLHKHGACV 101
                   9********************555555.5666887.9*******************9999843344556789************************* PP

                   EEEEE--GGGS..SCSTCEC..SS.ESSSSSTTT-.S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT----ST CS
  Oxidored_FMN  97 vvqlwhlGreakseyladqevdspsdpvaldaqeeesaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksnkrtDe 193
                    +ql h+G+ a   y  + e ++p   +  + +++  +   +++ +t+eei   +++f +AA+r + AgfD Veih+ ++YL+ qFlsp +nkrtDe
    CTQ26407.1 102 SIQLNHAGASA---YAYRLEGQTPLSSSTTPSKKH--G--NIPRPMTHEEIYHAVEKFGDAAERVRRAGFDCVEIHAGHSYLISQFLSPLFNKRTDE 191
                   ***********...777777777887777777733..3..3468***************************************************** PP

                   TSSSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEECE--STTS--HHHHHHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCCTT.HHHHHHC CS
  Oxidored_FMN 194 ygGslenRarFllevvdaVkeavgeer.vgyRlSpedvvekgldfaetaqkivllkelekrlkdgkklalvhaaeprkrgagsvrteqe.kntefvk 288
                   +gGs+enR r l  +vd+V+  vg  + v+ R+S++d  + g++  +    i +l + ++++++++     +++   + +  s +   +      v+
    CTQ26407.1 192 FGGSVENRTRILSLIVDKVRACVGPRFpVSLRISADDFLKGGNTLEDS-LRILELCQEKVDIINVSAAQNDNLN--LQIDQMSLEDGWKrYLSRAVR 285
                   ***********************************9999988888888.5555555555666544333222222..3444444444444346699** PP

                   CCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCT CS
  Oxidored_FMN 289 evwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkgl 339
                       kp++ +g+i  +++a++i+a g+adL+a+gR ++a+p++v+k++ g 
    CTQ26407.1 286 DKFHKPTVIAGNIRTPQVAEDILASGDADLIAIGRGLIAEPEWVQKVQGGK 336
                   ***********************************************9876 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 9.3
                   HHHHHHHHHH-SSS.EEEEEECE--STTS--HHHHHHHHH CS
  Oxidored_FMN 207 evvdaVkeavgeer.vgyRlSpedvvekgldfaetaqkiv 245
                   +v+ + ++a+g +  ++++ ++ ++ ++ + +  +  + +
    CTQ26407.1 543 AVLIEMQDAAGRDLdIITKNAMLTMLDEHQVEQHM--NTQ 580
                   56666667777777777777776666655544333..333 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.2   9.9e-09   6.1e-06     132     191 ..     373     431 ..     366     436 .. 0.86
   2 !   83.6   1.5   2.2e-26   1.4e-23       2     245 ..     385     619 ..     384     632 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 9.9e-09
                  HHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 132 saealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaalee 191
                  +a ++++ +++ ++vv+G+G  G+E A+++a++g+++ l+ea +++  +l +e+s+  e+
   CTQ26407.1 373 DAYKMRRVNRDTNVVVIGAGTAGMEAACTAAEVGCHTWLLEAKNHVG-GLASEISRLPEK 431
                  778888899999********************************997.788888876655 PP

  == domain 2  score: 83.6 bits;  conditional E-value: 2.2e-26
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias.evvkklnqgielllgeevvkidpgkkkvklekkkegdeeki 98 
                  +vvviG+G AG++aa t+a+ g+ + l+ + +++++g   l++++ + +e+++ia   +   +++ i  l +   ++i + + +v            +
   CTQ26407.1 385 NVVVIGAGTAGMEAACTAAEVGCHTWLL-EAKNHVGG---LASEISRLPEKKRIADfPQ--FMKNRIASLDN-LMLQIGKRA-DVAS-------VSAL 467
                  8***************************.88888888...7888999999999888733..12233444444.455553333.4444.......2367 PP

                  EESEEEE---EEE-BCTCTTC.......TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  99 aydklvlAtGssprdlgipGv......aenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaale 190
                    + +v AtGs+p +++i+G+      +++ ++++  + +  a   + + kri+vvG+G++G+++  +++  g++++l+e  d   r ld   ++a+ 
   CTQ26407.1 468 RPHLIVNATGSTPLLPPIEGLrenidvENGKIFSITGMIDNLAKFTDIKGKRIAVVGAGAVGLDVIEYFTARGAQAVLIEMQDAAGRDLDIITKNAML 565
                  7899999**************99999888888888888888888888888************************************************ PP

                  HHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCE..EEESEEEE-S-EEES-HHCS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 191 ealekeGvevklgtsvkeidgngeklevvledgee..idadlvvvavGvrpstelle 245
                    l ++ ve +++t+  ++ +++   +v+++++ +  i+ d+ +v+ G+r+++++l+
   CTQ26407.1 566 TMLDEHQVEQHMNTQLMAVAADHF--QVKNTQQ-TfdIPFDYGFVCLGMRANRTGLD 619
                  ****************99998886..4444444.347***************99984 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   1.6e-07    0.0001       1      43 [.     385     426 ..     385     435 .. 0.86
   2 !   35.0   0.3   2.5e-11   1.6e-08       1      69 [.     519     587 ..     519     595 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.6e-07
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHH CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeas 43 
                 +vvv+G+G+ g+E+A+++ae g+++ ++e+++++  +l  e+s
  CTQ26407.1 385 NVVVIGAGTAGMEAACTAAEVGCHTWLLEAKNHVG-GLASEIS 426
                 59******************************998.5555555 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 2.5e-11
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegs 69 
                 +++vvG+G +gl++ +++++ g++  ++e++d   r lD  + +++ + l ++ +e ++nt++ ++  +
  CTQ26407.1 519 RIAVVGAGAVGLDVIEYFTARGAQAVLIEMQDAAGRDLDIITKNAMLTMLDEHQVEQHMNTQLMAVAAD 587
                 79************************************************************9988755 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.3e-08   2.6e-05       1      42 [.     388     430 ..     388     441 .. 0.87
   2 !   10.0   0.1    0.0013      0.79       1      32 [.     522     553 ..     522     573 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4.3e-08
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE.TT CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev.pg 42 
                    ++GaG +G+ aA+++a+ g++  lle+ +++GG a+ +++ p+
     CTQ26407.1 388 VIGAGTAGMEAACTAAEVGCHTWLLEAKNHVGGLASEISRlPE 430
                    8**********************************99977643 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0013
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32 
                    +vGaG+ Gl    + + +g++ +l+e++d  G
     CTQ26407.1 522 VVGAGAVGLDVIEYFTARGAQAVLIEMQDAAG 553
                    8***************************9988 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.2e-06   0.00075      27      60 ..     382     415 ..     370     433 .. 0.87
   2 !   14.4   1.0   2.8e-05     0.017      15      92 ..     504     580 ..     499     594 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.2e-06
                  ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESS CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakglgakVtvlDvr 60 
                  +  +v+viG+G+aG++A+ ta+++g ++ +l+ +
   CTQ26407.1 382 RDTNVVVIGAGTAGMEAACTAAEVGCHTWLLEAK 415
                  6789*********************998888765 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.8e-05
                  SEEETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH- CS
  AlaDh_PNT_C  15 gkgtlaGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkea 92 
                  g++  +++ ++++  ++ v+G+G +Gl  i+  ++ ga+ ++++++ a+ + l+ + ++   + + +e++++++++++
   CTQ26407.1 504 GMIDNLAKFTDIKGKRIAVVGAGAVGLDVIEYFTARGAQAVLIEMQDAAGRDLDIITKN-AMLTMLDEHQVEQHMNTQ 580
                  666677888899999****************************************8877.667777888888887765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   3.4e-10   2.1e-07       2      40 ..     386     424 ..     385     446 .. 0.93
   2 ?   -1.7   0.1       2.2   1.4e+03      90     117 ..     561     588 ..     536     602 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 3.4e-10
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllts 40 
                   vvV+G+g+aG+ AA +Aa+ G  + L+e ++++GGl++ 
    CTQ26407.1 386 VVVIGAGTAGMEAACTAAEVGCHTWLLEAKNHVGGLASE 424
                   9***********************************985 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.2
  FAD_oxidored  90 kavleemlaeagvtvllntrlvevekeg 117
                   k+++  ml+e++v+  +nt+l +v  + 
    CTQ26407.1 561 KNAMLTMLDEHQVEQHMNTQLMAVAADH 588
                   6677788888888888888888887764 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   1.8e-09   1.1e-06       1      29 [.     385     416 ..     385     472 .. 0.75
   2 ?   -1.8   0.1         2   1.2e+03       2      29 ..     520     547 ..     519     592 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.8e-09
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE...E CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi...t 29 
                 +v+ViG+G AG+eAA +aa+ G+++ L+    
  CTQ26407.1 385 NVVVIGAGTAGMEAACTAAEVGCHTWLLeakN 416
                 59*************************95432 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2
                 EEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLit 29 
                 + V+G+G  G+        +Ga+ +Li 
  CTQ26407.1 520 IAVVGAGAVGLDVIEYFTARGAQAVLIE 547
                 7899999999998888888888888883 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.8     1e-07   6.4e-05       2      36 ..     385     419 ..     384     420 .. 0.95
   2 !    8.0   0.5    0.0016      0.98       2      40 ..     519     557 ..     518     561 .. 0.93
   3 ?   -1.2   0.0         1   6.2e+02     114     149 ..     563     596 ..     557     635 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1e-07
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36 
                  +v+viG+G AG+ aA +aa+ g+++ lle+++++g
   CTQ26407.1 385 NVVVIGAGTAGMEAACTAAEVGCHTWLLEAKNHVG 419
                  79*****************************9987 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0016
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHH CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKil 40 
                  +++v+G+Ga Gl   +   +rg++ +l+e ++++gr + 
   CTQ26407.1 519 RIAVVGAGAVGLDVIEYFTARGAQAVLIEMQDAAGRDLD 557
                  689********************************9775 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1
                  HHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE..T CS
  HI0933_like 114 allkelkeagvklrletevksvekeedgkfrvkt.ks 149
                  a+l+ l+e +v+ +++t++ +v   +d+ f+vk  ++
   CTQ26407.1 563 AMLTMLDEHQVEQHMNTQLMAV--AADH-FQVKNtQQ 596
                  6888999999999999999999..4455.66666233 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.9e-05     0.018       1      33 [.     387     418 ..     371     458 .. 0.78
   2 !    9.0   0.1    0.0012      0.73     156     275 ..     509     619 ..     490     636 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.9e-05
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgnig 33 
                  ++iGaG aG++aa+++ ++g +    lE +n++
   CTQ26407.1 387 VVIGAGTAGMEAACTAAEVGCH-TWLLEAKNHV 418
                  5788888888888888888884.5578877665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0012
  Pyr_redox_3 156 vkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgk 253
                    +f++++g++++V+G++  + D+   + ++ga+  ++  ++   +        l  +++n + ++++e++++ + n+++ ++  +  +++vk +++ 
   CTQ26407.1 509 LAKFTDIKGKRIAVVGAGAVGLDVIEYFTARGAQAVLIEMQDAAGR-------DLDIITKNAMLTMLDEHQVEQHMNTQLMAVAAD--HFQVKNTQQ- 596
                  5689999*****************9999999***999999875444.......477788888888888888999999999999876..566665553. PP

  Pyr_redox_3 254 kvev.kddvvlatGykpdlsflk 275
                  ++++  d  ++++G + + + l+
   CTQ26407.1 597 TFDIpFDYGFVCLGMRANRTGLD 619
                  33431344455577776666555 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.021        13       6      39 ..     382     415 ..     380     480 .. 0.74
   2 !   17.0   0.1   9.8e-06     0.006       2      61 ..     512     579 ..     511     652 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.021
  NAD_binding_7   6 kgkkvlvvGgGevAarkvrklleagakvtvvape 39 
                    ++ +v+v+G+G+ +++ + + +e g++  ++  +
     CTQ26407.1 382 RDTNVVVIGAGTAGMEAACTAAEVGCHTWLLEAK 415
                    5789**********************99887655 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 9.8e-06
  NAD_binding_7   2 fldlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeele...........elvklaeeelekdleg 61 
                    f+d+kgk++ vvG+G v++  ++ + + ga+ +++  +    +             l  l e ++e++++ 
     CTQ26407.1 512 FTDIKGKRIAVVGAGAVGLDVIEYFTARGAQAVLIEMQD---AAgrdldiitknaMLTMLDEHQVEQHMNT 579
                    789*******************************98874...22222334443332222334444444433 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00079      0.49       1      33 [.     385     417 ..     385     462 .. 0.85
   2 !   13.2   0.6    0.0001     0.062       2      56 ..     520     574 ..     519     598 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00079
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdisee 33 
                 +v viGaGt G + a  +a+ g+++ l++ +++
  CTQ26407.1 385 NVVVIGAGTAGMEAACTAAEVGCHTWLLEAKNH 417
                 699************************998765 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.0001
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH.HHHCCTTTTSS- CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekiek.sleklvekgklk 56 
                 +av+GaG +G  + + f ++g + vl++++++a ++  + i+k  +  +  +++++
  CTQ26407.1 520 IAVVGAGAVGLDVIEYFTARGAQAVLIEMQDAAGRDL-DIITKnAMLTMLDEHQVE 574
                 9***************************987665544.444431333333333333 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.012       7.6      34      68 ..     381     415 ..     367     436 .. 0.83
   2 !   14.6   0.1   2.5e-05     0.016      30      70 ..     511     551 ..     493     574 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.012
                   GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSS CS
  2-Hacid_dh_C  34 lsgktvGiiGlGrIGqavakrlkafgmkviaydrs 68 
                    ++  v +iG+G  G ++a +++++g++    + +
    CTQ26407.1 381 NRDTNVVVIGAGTAGMEAACTAAEVGCHTWLLEAK 415
                   567889*********************98877665 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.5e-05
                   SBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  30 lgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskk 70 
                   + ++++gk+++++G+G++G  v+++++a g++ + ++ +  
    CTQ26407.1 511 KFTDIKGKRIAVVGAGAVGLDVIEYFTARGAQAVLIEMQDA 551
                   5679***************************9988876654 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   1.8   1.8e-07   0.00011       2      41 ..     386     426 ..     385     427 .. 0.91
   2 ?   -3.4   0.1         6   3.7e+03       3      26 ..     521     544 ..     520     577 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.8e-07
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS.GGGG- CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg.ataws 41 
                    v+ViG+G AG+ AA +aae G  + ++e ++ +gg a+ +s
     CTQ26407.1 386 VVVIGAGTAGMEAACTAAEVGCHTWLLEAKNHVGGlASEIS 426
                    9*****************************99999777665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6
                    EEE--SHHHHHHHHHHHHTTT-EE CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkva 26 
                     V+G+G+ GL      + +G++ +
     CTQ26407.1 521 AVVGAGAVGLDVIEYFTARGAQAV 544
                    689999988865444444455444 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1     9e-05     0.056      17      55 ..     383     420 ..     370     424 .. 0.90
   2 !    6.5   0.1    0.0071       4.4      12      54 ..     512     553 ..     502     592 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9e-05
                 EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T CS
        Thi4  17 esDvvivGaGssGLtaayylakkpdlkvailersvspGG 55 
                 +++vv++GaG++G+ aa + a+  + ++ +le++  +GG
  CTQ26407.1 383 DTNVVVIGAGTAGMEAACTAAEV-GCHTWLLEAKNHVGG 420
                 578***************99999.**********99998 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0071
                 HHHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS-- CS
        Thi4  12 llkyaesDvvivGaGssGLtaayylakkpdlkvailersvspG 54 
                 + ++    +++vGaG+ GL    y++ + + + +++e + + G
  CTQ26407.1 512 FTDIKGKRIAVVGAGAVGLDVIEYFTAR-GAQAVLIEMQDAAG 553
                 555666789***************9999.99999999887766 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0058       3.6      17      43 ..     382     408 ..     369     412 .. 0.88
   2 !   11.4   0.0   0.00024      0.15      14      44 ..     513     543 ..     498     588 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0058
                 HTSEEEEE--SHHHHHHHHHHHHHTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  17 rdskvllvGaGglGsellknLalsGvg 43 
                 rd+ v+++GaG+ G e++ + a +G+ 
  CTQ26407.1 382 RDTNVVVIGAGTAGMEAACTAAEVGCH 408
                 5699*****************999996 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00024
                 HHHHTSEEEEE--SHHHHHHHHHHHHHTTTE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  14 ekLrdskvllvGaGglGsellknLalsGvgk 44 
                   ++ +++++vGaG++G  +++++ + G + 
  CTQ26407.1 513 TDIKGKRIAVVGAGAVGLDVIEYFTARGAQA 543
                 56888*******************9999873 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.8    0.0035       2.2       2      34 ..     386     420 ..     385     428 .. 0.90
   2 !   11.0   0.0   0.00038      0.23       2      33 ..     520     553 ..     519     636 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0035
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdiags 34 
                 vv+iG+G +G+ +A  +a+ g  + lle+++ +g 
  CTQ26407.1 386 VVVIGAGTAGMEAACTAAEVGchTWLLEAKNHVGG 420
                 9****************99999*******998883 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00038
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdiag 33 
                 ++++G+G +Gl +  + ++rg   +l+e++d ag
  CTQ26407.1 520 IAVVGAGAVGLDVIEYFTARGaqAVLIEMQDAAG 553
                 9*****************************5554 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0     0.006       3.7     172     208 ..     366     400 ..     330     412 .. 0.85
   2 !   10.8   0.0   0.00031      0.19     150     218 ..     470     545 ..     444     595 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.006
  K_oxygenase 172 kervvHsseylerkeellakkriaVvGsGqSaaeife 208
                  +++++H + y  r+   ++  +++V+G+G  + e + 
   CTQ26407.1 366 NPDIIHGDAYKMRR--VNRDTNVVVIGAGTAGMEAAC 400
                  4799******9998..8999**********9999765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00031
  K_oxygenase 150 rnlvlgvGtepkiPevlekle....gkervvHsseylerkee..llakkriaVvGsGqSaaeifedllrrqkk.ve 218
                    +v ++G++p +P++    e    ++ +++    +  + ++  + ++kriaVvG+G  + +++e  ++r ++ v 
   CTQ26407.1 470 HLIVNATGSTPLLPPIEGLREnidvENGKIFSITGMIDNLAKftDIKGKRIAVVGAGAVGLDVIEYFTARGAQaVL 545
                  5567799999999987332223345567888888888887778899******************999988443233 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2     0.078        48      11      36 ..     382     407 ..     374     476 .. 0.85
   2 !   15.6   0.2     2e-05     0.012       6      41 ..     511     546 ..     508     586 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.078
                   TT-EEEEES-SHHHHHHHHHHHCCT- CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakgv 36 
                   ++ +v++iGaG  + ++a   ++ g+
    CTQ26407.1 382 RDTNVVVIGAGTAGMEAACTAAEVGC 407
                   5789********99998876666665 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2e-05
                   HHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEE CS
  Shikimate_DH   6 kleslkekkvlliGaGemaelvakhLlakgvkkvvv 41 
                   k+ ++k+k++ ++GaG ++  v++++ a+g+++v++
    CTQ26407.1 511 KFTDIKGKRIAVVGAGAVGLDVIEYFTARGAQAVLI 546
                   7889*****************************998 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     2e-05     0.013     106     175 ..     239     321 ..     230     325 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2e-05
                 HHHHHHHHHTT-SEEEEE-STSSSHH.HHHHH...........HHHHHHTTTSEEEEEEE-SHHHHHHHHHTT.-SEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
       IMPDH 106 lervkalveagvdvlvvdsahghsek.vleav...........keikkkveeveviaGnvataegakaLieag.adavkvGiG 175
                   r+ +l++++vd++ v +a+  + + +++++           +++++k+++ +viaGn+ t + a+++++ g ad + +G G
  CTQ26407.1 239 SLRILELCQEKVDIINVSAAQNDNLNlQIDQMsledgwkrylsRAVRDKFHKPTVIAGNIRTPQVAEDILASGdADLIAIGRG 321
                 568888999999999999998776431444432222222222268999999999************99776654999999977 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00084      0.52       1      33 [.     383     415 ..     383     419 .. 0.92
   2 ?    3.6   0.0     0.051        31       4      37 ..     520     553 ..     518     631 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00084
                    EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3   1 etdVlIVGaGpaGlmlallLseaGvrvvlvekr 33 
                    +t+V+++GaG aG+ +a   +e G  + l+e  
     CTQ26407.1 383 DTNVVVIGAGTAGMEAACTAAEVGCHTWLLEAK 415
                    689***********************9999976 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.051
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSC CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttv 37 
                    +++VGaG +Gl      + +G + vl+e ++ + 
     CTQ26407.1 520 IAVVGAGAVGLDVIEYFTARGAQAVLIEMQDAAG 553
                    689************************9776554 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.2   3.9e+03      31      55 ..     382     406 ..     373     409 .. 0.78
   2 ?   14.4   0.1   3.8e-05     0.024      18     120 ..     502     608 ..     496     631 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.2
                    TTEEEEEE--SHHHHHHHHHHHHCT CS
  ELFV_dehydrog  31 egkrvaisGsGnvgsyaallltelg 55 
                    ++++v++ G G  g  aa  ++e g
     CTQ26407.1 382 RDTNVVVIGAGTAGMEAACTAAEVG 406
                    56789999******99998888766 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 3.8e-05
                    HHHHHHHTTTS.-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE-HHHHHHHHHCSSSSTTHSHH....STSTSEEESHHSH CS
  ELFV_dehydrog  18 veemlkklkld.slegkrvaisGsGnvgsyaallltelgakvvavsDssGviydpeGldieellelkeerksvkeykks....sekkaeyieneee 108
                    +  m+++l+   +++gkr+a+ G G vg  +++ +t +ga+ v +  ++ +  d + + ++++l + +e++  ++++++     + ++  ++n ++
     CTQ26407.1 502 ITGMIDNLAKFtDIKGKRIAVVGAGAVGLDVIEYFTARGAQAVLIEMQDAAGRDLDIITKNAMLTMLDEHQVEQHMNTQlmavAA-DHFQVKNTQQ 596
                    5566666544349***************************998776555555566666555555554444443333333333222.2234444445 PP

                    HHHSS-SEEEE- CS
  ELFV_dehydrog 109 llelkvdilvPc 120
                     +++++d+ + c
     CTQ26407.1 597 TFDIPFDYGFVC 608
                    566666665555 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1         3   1.8e+03     139     159 ..     151     171 ..     144     172 .. 0.85
   2 ?   12.3   0.0   0.00011     0.068     176     234 ..     282     337 ..     268     358 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3
                 .HHHHHHHHHHCT-SEEEEES CS
         Dus 139 nalelakiveaaGaqaltvHg 159
                 +  ++a++v +aG + + +H+
  CTQ26407.1 151 KFGDAAERVRRAGFDCVEIHA 171
                 5568999*************7 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00011
                 HHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHHHHHHHHSC- CS
         Dus 176 kevkqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfaestavktgea 234
                 ++v++++  p ++ G+I++++ a++il+   ad + igrg   +P  ++   +v+ g+ 
  CTQ26407.1 282 RAVRDKFHKPTVIAGNIRTPQVAEDILASGDADLIAIGRGLIAEPEWVQ---KVQGGKE 337
                 57999999999999*******************************9998...4444444 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.012       7.3       1      44 [.     386     433 ..     386     478 .. 0.74
   2 ?    6.2   1.1     0.023        14       2      65 ..     521     582 ..     520     591 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.012
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG....-GGG-TT-SE CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefa....tkerfpeade 44 
                 +v++Gag  + + a  aa++g++++++++++++     + +r+pe+++
  CTQ26407.1 386 VVVIGAGTAGMEAACTAAEVGCHTWLLEAKNHVGglasEISRLPEKKR 433
                 689************************999976677775555554443 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.023
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE-EEEE--S-HHHHHHHHHHHS CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefatkerfpeadetavvvlthdhklDaealeaal 65 
                 +++Gag v+  ++++  a g + ++++ ++++   +++   +++a++ +  +h+ ++++  +++
  CTQ26407.1 521 AVVGAGAVGLDVIEYFTARGAQAVLIEMQDAAG--RDLDIITKNAMLTMLDEHQVEQHMNTQLM 582
                 79**************************99744..444444679************99998887 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.017        11     168     203 ..     368     403 ..     350     418 .. 0.86
   2 ?    4.4   0.0     0.017        10     182     215 ..     516     550 ..     506     612 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.017
    FMO-like 168 qyfhsrdykepevfkgkrvlviGlGnsggdiavels 203
                 +++h   yk   v ++  v+viG G +g + a+ ++
  CTQ26407.1 368 DIIHGDAYKMRRVNRDTNVVVIGAGTAGMEAACTAA 403
                 689*************************99887655 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.017
    FMO-like 182 kgkrvlviGlGnsggdiavel.srtaeqvllstrs 215
                 kgkr+ v+G G  g d+     +r a+ vl+  + 
  CTQ26407.1 516 KGKRIAVVGAGAVGLDVIEYFtARGAQAVLIEMQD 550
                 67777777777777776554314556666665554 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.53   3.3e+02       2      25 ..     385     408 ..     384     432 .. 0.85
   2 ?    8.8   0.0    0.0018       1.1       2      35 ..     519     552 ..     518     602 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.53
                     EEEEE--STTHHHHHHHHHHCTSE CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighe 25 
                     +++viG+G  G+  a   ae+g +
      CTQ26407.1 385 NVVVIGAGTAGMEAACTAAEVGCH 408
                     799************999999966 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0018
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHH CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDideek 35 
                     +i+v+G+G vGl     + ++g + +++ +++++
      CTQ26407.1 519 RIAVVGAGAVGLDVIEYFTARGAQAVLIEMQDAA 552
                     8***********************9999988764 PP

>> TACI-CRD2  TACI, cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.9   0.00077      0.48      13      28 ..     338     353 ..     335     364 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00077
   TACI-CRD2  13 eLlrdCisCssiCGqH 28 
                 +L+r+CisC+  C  H
  CTQ26407.1 338 RLMRKCISCNIGCADH 353
                 79***********999 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.34   2.1e+02       1      90 [.     386     469 ..     386     476 .. 0.70
   2 ?    7.4   0.3    0.0053       3.3       1      76 [.     520     609 ..     520     635 .. 0.56

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.34
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGG CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikp 90 
                 ++++GaG  G   a++ a+ g++ +l+  ++++  l ++ +rl +++  +i+ +p+ + +     ++  d++++ +    +++ +++++p
  CTQ26407.1 386 VVVIGAGTAGMEAACTAAEVGCHTWLLEAKNHVGGLASEISRLPEKK--RIADFPQFMKNR----IASLDNLMLQIGKRADVASVSALRP 469
                 689********************999999998887777777776666..555555555555....6666666665555555555555555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0053
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH....HHHHHHHHCE.EEEETT..CEEEEEECEEECCH............SCCCCS-ESEEEE-S CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr....rlealkknGl.rltseg..geeilrppealsae............ekselepidlvivtv 76 
                 ia++GaGa+G  +  + ++ ga+ +li  ++     l+ + kn + ++ +e+  +++ + +                   ++  + p+d+ +v++
  CTQ26407.1 520 IAVVGAGAVGLDVIEYFTARGAQAVLIEMQDaagrDLDIITKNAMlTMLDEHqvEQHMNTQL-----MavaadhfqvkntQQTFDIPFDYGFVCL 609
                 89***************999999777754431002334433332202222223222222222.....1223346666665555566666666665 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       6.6   4.1e+03     118     144 ..     250     276 ..     246     280 .. 0.80
   2 ?    2.0   0.1      0.32     2e+02      99     137 ..     338     376 ..     329     403 .. 0.69
   3 ?    7.9   0.1     0.005       3.1       9      55 ..     505     549 ..     499     595 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6.6
                    HHHHHTTT-EEEEEETTEEEEE-TTS- CS
  AdoHcyase_NAD 118 vaaleanalkkeevkpqvdrvtlkdgk 144
                    v+ ++ +a+++++++ q+d++ l+dg 
     CTQ26407.1 250 VDIINVSAAQNDNLNLQIDQMSLEDGW 276
                    566677788999999999999999985 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.32
                    CS-TTEEEEE-SSTTTTBTHHHHHTTT-EEEEEETTEEE CS
  AdoHcyase_NAD  99 kmkddaivcniGhfdseidvaaleanalkkeevkpqvdr 137
                    ++  ++i cniG  d+ i  +   + +++ + ++ +  +
     CTQ26407.1 338 RLMRKCISCNIGCADHRIARSRPLRCSINPDIIHGDAYK 376
                    56779*********9999876655555666666655444 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.005
                    CCHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S- CS
  AdoHcyase_NAD   9 lvdgikratdvllaGkvavvaGyGdvGkGcaaslkglGarvivtevd 55 
                    ++d + + td  + Gk + v+G G vG    + + + Ga+ ++ e+ 
     CTQ26407.1 505 MIDNLAKFTD--IKGKRIAVVGAGAVGLDVIEYFTARGAQAVLIEMQ 549
                    7999999999..58*************************99998875 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.83   5.1e+02       1      21 [.     386     407 ..     386     419 .. 0.80
   2 ?    8.9   0.1    0.0028       1.7       1      32 [.     520     551 ..     520     567 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.83
                 EEEES-SHHHHHHHHHHHH.TT CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.gg 21 
                 +++iG+G+ G++ a +  e g+
  CTQ26407.1 386 VVVIGAGTAGMEAACTAAEvGC 407
                 79*********99977666555 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0028
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESSHH CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkdee 32 
                 i+++G+G vG  ++e+++++g + v+i+ +++
  CTQ26407.1 520 IAVVGAGAVGLDVIEYFTARGAQAVLIEMQDA 551
                 79*****************7768****98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      678  (0.0378158); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 4415.20
//
Query:       CTQ26408.1  [L=201]
Description: 3-isopropylmalate isomerase subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-40  139.1   0.0    1.3e-40  138.7   0.0    1.1  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   0.0   7.4e-45   1.3e-40       2     130 ..       3     126 ..       2     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 7.4e-45
                  CCCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHHH CS
  Aconitase_C   2 ekllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalrl 99 
                  ek+++ +Gl ++++++nvdtd++ipkqf++ ++++g+g++l++++r+ +++++  ++++++v++ ++y+  ga++++++ +nfG+GSSRehA++al +
   CTQ26408.1   3 EKFTQHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLDDKGQ--QPNPEFVLNFPEYQ--GASILLAR-ENFGCGSSREHAPWALTD 95 
                  79**************************************************8..89************..*****999.****************** PP

                  TTEEEEEES-B-HHHHHHHHHTT-EEEEEST CS
  Aconitase_C 100 lGikaviaeSFerIfennliknglLplefke 130
                  +G+k+via+SF++If+ n+++n lLp+++++
   CTQ26408.1  96 YGFKVVIAPSFADIFYGNSFNNQLLPVTLSD 126
                  ***************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1538.15
//
Query:       CTQ26409.1  [L=466]
Description: 3-isopropylmalate dehydratase (isomerase), subunit with LeuD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.1e-163  542.5   0.8     1e-162  542.3   0.8    1.0  1  Aconitase  Aconitase family (aconitate hydratase)
  ------ inclusion threshold ------
       0.13   11.8   0.8       0.23   11.0   0.8    1.3  1  Spo0M      SpoOM protein


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  542.3   0.8  1.2e-166    1e-162       1     461 []       7     457 ..       7     457 .. 0.96

  Alignments for each domain:
  == domain 1  score: 542.3 bits;  conditional E-value: 1.2e-166
   Aconitase   1 ekiwdahlv...eeeg.iayvpdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernkeryefLksaak 95 
                 ek++dah+v   ++e+ ++y+ dr+l+++vt++qa+ +l+a +++vr++g+t+at+dh+v+++    +        + n + e++r   +++ L +++k
  CTQ26409.1   7 EKLFDAHVVyeaQNETpLLYI-DRHLVHEVTSPQAFDGLRAHGRQVRQPGKTFATMDHNVSTQ---TK--------DINASGEMAR--IQMQELIKNCK 91 
                 689999999543223368888.*****************************************...23........3466777778..*********** PP

   Aconitase  96 afgirvvppg...qGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavigk 191
                 +fg+++++++   qGIvH++++E+g++lpg+t+v++DSHT+++g++G+la+G+G++e+e+vl++q+l++ + k+++++++Gk  +g+takD+vla+igk
  CTQ26409.1  92 EFGVELYDLNhpyQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITAKDIVLAIIGK 190
                 *******999999************************************************************************************** PP

   Aconitase 192 lrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaavlveaydkaqalf.elaadedaeydkvleldlstlep 289
                  + +g++g+vvEf+Ge++++Ls+e+r+T++NMa+E+GA++gl+++de+t++Y++  gr +a+ +++++d a+a++ +l++d++a++d+v++l++++++p
  CTQ26409.1 191 TGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFNYVR--GRLHAP-KGKDFDDAVAYWkTLKTDDGATFDTVVTLQAAEIAP 286
                 ******************************************************..******.7***********88********************** PP

   Aconitase 290 svagpkrPqdavplselvk.k.efkeelekeaaekaley.klkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkpgvktsvaPGSe 385
                 +v+++++P ++++++++++ + +f++ +e+++aekal+y +lk+g +l+++++d+++igSCTNs++ed+raaa++++     g+kv+pgv+++v+PGS+
  CTQ26409.1 287 QVTWGTNPGQVISVTDNIPdPaSFSDPVERASAEKALAYmGLKSGIPLTQVAIDKVFIGSCTNSRIEDLRAAAEIAK-----GRKVAPGVQALVVPGSG 380
                 ******************97569******************************************************.....***************** PP

   Aconitase 386 vvkayleaeGlleiLekaGfevvgagCstCig.nsdrleegeaivsssNRNFegRqgpntrayLaSPelvvaaAlaG 461
                  vka++eaeGl++i+ +aGfe++ +gCs+C++ n+drl++ge+++s+sNRNFegRqg+++r++L+SP++++aaA++G
  CTQ26409.1 381 PVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAmNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTG 457
                 ***************************************************************************98 PP

>> Spo0M  SpoOM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.8   2.5e-05      0.23       7      41 ..     141     175 ..     139     202 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.5e-05
                 XXX----EEEEEES-SEE-TT-EEEEEEEEE--SS CS
       Spo0M   7 svGiGgakVdtvLekeevrpGetlegevevkGGsv 41 
                 ++GiG  +V+ vL+++++  G+  + ++ev+G ++
  CTQ26409.1 141 AFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAA 175
                 69*****************************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3640.31
//
Query:       CTQ26410.1  [L=363]
Description: 3-isopropylmalate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-138  461.1   0.0   2.6e-138  460.9   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.9   0.0  1.5e-142  2.6e-138       1     348 []       6     355 ..       6     355 .. 0.99

  Alignments for each domain:
  == domain 1  score: 460.9 bits;  conditional E-value: 1.5e-142
                 EEEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CS....SSSSSHHH.HHHHHHHHTTE CS
      Iso_dh   1 kiallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikeadvvllgavgtpk....ekevrpen.gLlaLrkeldl 94 
                 +ia+l+gdgiGpev+++a+kvl+a++++  ++++++++dvGgaaid++g+plp++t++ +++ad++l+g+vg+pk    +   +pe+ +Ll Lrk+++l
  CTQ26410.1   6 HIAVLPGDGIGPEVMNQAMKVLEAVRQRFAMHITTSQYDVGGAAIDRQGTPLPQATVAGCEQADAILFGSVGGPKwehlPPAEQPERgALLPLRKHFKL 104
                 59*****************************************************************************9999999999********** PP

                 EEEEEEEE-BCCTTCCSSBTHHHHCT.-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHH CS
      Iso_dh  95 fanlrpvkvfeklkvksplkrevvee.vdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlks 192
                 f+nlrp+k+++ l++ +pl+++++ + +d+++vReltggiYfg++k ++gs+ ++e+a+dt++y++ eieriar+afe A+kr ++kvt++dKanvl+s
  CTQ26410.1 105 FSNLRPAKLYQGLEEFCPLRADIAANgFDILCVRELTGGIYFGQPKGREGSG-QHEKAFDTEVYHRFEIERIARIAFESARKR-RHKVTSIDKANVLQS 201
                 ***********************9999***********************96.9999**************************.*************** PP

                 HHHHHHHHHHHHCCTTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEETSS-EEEEESS---CCCTTSS-S-TH CS
      Iso_dh 193 selwrkiveevaeeeypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslgekkvaifEavHGsapdiagkdkaNpi 291
                 s lwr+iv e+ + eypd+el h+++D+a+mql+k+p+qfdV++++NlfGDilSDe+a+++Gs+G+lpSasl+e++++++E++ Gsapdiagk++aNpi
  CTQ26410.1 202 SILWREIVSEIGK-EYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPI 299
                 *************.************************************************************************************* PP

                 HHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHTSCCHHHCTTSTCCCHHHHHHHHH CS
      Iso_dh 292 avilSaalmLryslgleeaAdkiekAvekvleagivTkDlageaakevstsefgdav 348
                 a+ilS al+Lrysl+++eaA++ie+A++++le+g++T+Dla+    +vst+e+gd +
  CTQ26410.1 300 AQILSLALLLRYSLDADEAATAIENAINRALEEGVRTGDLARGT-AAVSTDEMGDII 355
                 ******************************************88.9********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2713.76
//
Query:       CTQ26411.1  [L=523]
Description: 2-isopropylmalate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.3e-106  354.7   6.2   4.7e-106  354.2   6.2    1.2  1  HMGL-like   HMGL-like
    2.2e-35  121.5   0.1    4.9e-35  120.3   0.1    1.7  1  LeuA_dimer  LeuA allosteric (dimerisation) domain


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.2   6.2  5.3e-110  4.7e-106       1     264 []       4     273 ..       4     273 .. 0.99

  Alignments for each domain:
  == domain 1  score: 354.2 bits;  conditional E-value: 5.3e-110
                 B-EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B..--EE-SSHHHHHHHHH....TT-SEEEEEEES CS
   HMGL-like   1 kvkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkarilalvrarekdikaavealkgagakrvhvfiat 99 
                 +v+i+dttLRDGeqal+a+lsv+ekl+ia aL+++gvd++Evgfp++s++dfe+v++ia+++k++r++al+r++ekdi++a+e+lk+a+a r+h+fiat
  CTQ26411.1   4 QVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVMEVGFPVSSPGDFESVQTIARTIKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIAT 102
                 589************************************************************************************************ PP

                 -HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-ETTT-BTTTBS--HHHHHHHHHHHHHHT-SEEEEEETTS---HHHHHHHHHHHHHHS-...GGGEEE CS
   HMGL-like 100 selhlkaklkkdreevakkaeeavkaarslgkdvelsledasrtdleflaevveaaeeaGatriniaDtvGvltPneaaelisalkervk..dkvilsv 196
                 s +h+ +kl+ + +ev+++a  +vk+ar++++dve+s+eda+rt++++la+vveaa++aGat+ini+DtvG+++P+e+a++is l +rv+  dk+i+sv
  CTQ26411.1 103 SPMHIATKLRSTLDEVIERAIYMVKRARKYTDDVEFSCEDAGRTPIADLARVVEAAINAGATTINIPDTVGYTMPFEYANIISGLYDRVPniDKAIISV 201
                 *************************************************************************************************** PP

                 EEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT....-B----HHHHHHHHHHH CS
   HMGL-like 197 HcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealg....vdtgldlqklrsiaalv 264
                 H+H+dlG+Av+n+laAv+aGa++v+g++nG+GeraGn+alee+++a+++++    v+t+++++++++++++v
  CTQ26411.1 202 HTHDDLGIAVGNALAAVHAGARQVEGAMNGIGERAGNCALEEVIMAIKVRKdimnVHTNINHHEIWRTSQTV 273
                 *********************************************************************987 PP

>> LeuA_dimer  LeuA allosteric (dimerisation) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.1   5.5e-39   4.9e-35       1     132 [.     369     499 ..     369     500 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 5.5e-39
                 XXXXXXXXXXXXXXXXXXX.--EEEEEEEEEEETTCEEEEEEEEEE.TTEEEEEEEE-SSHHHHHHHHHHHHHHHT-EEEEEEEE--TT-TT--EEEEE CS
  LeuA_dimer   1 evtdedlealvkdelleae.erlkleklqvssgedelstatvklevkdgeekeasaeGnGpvdAllnAlrkalgvdikLldYsvhaitegtdaqaevrV 98 
                 +v+d+dleal+  + +++e e+++l+ ++v+sg+++ +ta++kl + ++e+k+++a GnGpvdA+++A++++++ +i+L +Y + a ++g+da+++v++
  CTQ26411.1 369 QVFDYDLEALAFINKQQEEpEHFRLDYFNVHSGSSDIATASIKLVC-GDEIKTEAANGNGPVDAIYQAINRVTDYNIELVKYGLSAKGHGKDALGQVDI 466
                 699**************999**************************.**************************************************** PP

                 EEE--GGGEEEEEEEESSHHHHHHHHHHHHHHHH CS
  LeuA_dimer  99 elevddgkkvsgvGvdsdiveASlkAlisalnrl 132
                  +  ++g++++gvG+++dive+S+kA++++ln++
  CTQ26411.1 467 VVD-YNGRRFHGVGLATDIVESSAKAMVHVLNNI 499
                 ***.88888***********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3740.72
//
Query:       CTQ26412.1  [L=322]
Description: DNA-binding transcriptional activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-18   65.9   0.0    3.9e-18   65.2   0.0    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    8.9e-17   61.1   0.1    1.4e-16   60.5   0.1    1.3  1  LysR_substrate  LysR substrate binding domain


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   4.3e-22   3.9e-18       1      59 [.      32      90 ..      32      91 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 4.3e-22
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l++l +f+av++e+++trAA  Lg+sqpavs +++rL   ++++Lf+R grg+++T+++
  CTQ26412.1 32 LNLLTVFDAVMQEQNITRAAHTLGMSQPAVSNAVSRLKVMFNDELFVRYGRGIQPTARA 90
                689*****************************************************975 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.1   1.5e-20   1.4e-16      31     206 ..     145     318 ..     121     321 .. 0.88

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 1.5e-20
                     HSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGGGCTSEEEEESTTSTHHHHHHHHHHC CS
  LysR_substrate  31 ryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsledLadeplilleegsglrdlledalre 125
                       P+++l  +++ +++ + +l+  e  ++i +++ +++++ ++pL+++++vlvas++hp   g p   +d+ +e++  +    ++  + + + + 
      CTQ26412.1 145 IAPNIHLVFKSALNQNTEHQLRYQETEFVIGYEEFRRPEFACVPLFKDEMVLVASRNHPRISG-PMMEADIYREEHAAVA-LDRYASFSLPWYDT 237
                     5799******************************************************98888.6645555554444433.46688888888888 PP

                     TTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTCCCHHHHHHHHHHHHH CS
  LysR_substrate 126 aglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgrelspavrafidflre 206
                     a  ++r+a++ n + ++l+ v++  ++a++pr++++++ +   l++lplp   +  r+ yl +++   +++  +++ ++l +
      CTQ26412.1 238 ADKQARIAYQGNAMVSVLNVVSQTQMVAIAPRWLADEFADKLALQILPLPL-KVNsRTCYLSWHEAAGRDKGHQWMEELLVD 318
                     999999*****************************9999************.8888**********9999999998888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2542.82
//
Query:       CTQ26413.1  [L=574]
Description: acetolactate synthase III, large subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-58  197.2   0.5    2.9e-55  186.5   0.2    2.4  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    2.4e-50  170.3   0.0      3e-49  166.7   0.0    2.5  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    5.6e-47  158.9   0.0    1.1e-46  158.0   0.0    1.5  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
     0.0071   16.1   0.9      0.014   15.2   0.5    1.6  2  POR_N         Pyruvate flavodoxin/ferredoxin oxidoreductase, 
  ------ inclusion threshold ------
      0.018   15.2   0.0      0.044   14.0   0.0    1.7  1  Kindlin_2_N   Kindlin-2 N-terminal domain
       0.12   12.3   0.8        0.3   10.9   0.2    2.0  2  ROQ_II        Roquin II domain
       0.15   10.8   0.0       0.27   10.0   0.0    1.3  1  XFP_N         XFP N-terminal domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.5   0.2   1.1e-58   2.9e-55       2     165 ..       5     167 ..       4     171 .. 0.98
   2 !    8.5   0.0   0.00054       1.4      66     160 ..     441     546 ..     427     551 .. 0.78

  Alignments for each domain:
  == domain 1  score: 186.5 bits;  conditional E-value: 1.1e-58
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   ++ae++v+ L ++gv++vfg+pG+ +l+++dal+   gi++vl+rhEq+a+++Adg+aratg++gvvlvtsgpGatna+t++a+A+ d+iPl++lsg
    CTQ26413.1   5 SGAEMVVQSLVDQGVKQVFGYPGGAVLDIYDALHTLGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVILSG 101
                   689********************************************************************************************** PP

                   E--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC CS
  TPP_enzyme_N  99 drptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvll 165
                   +++tsl+g +++q e+d +++ rpv+k+++ v++ e++p +l++A+  a+sgrpgPv+++lpkd+l+
    CTQ26413.1 102 QVATSLIGYDAFQ-ECDMVGISRPVVKHSFLVKQTEDIPGVLKKAFWLAASGRPGPVVVDLPKDILN 167
                   *************.**************************************************986 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00054
                   EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEEE--CCCHH.............S..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHS CS
  TPP_enzyme_N  66 gvvlvtsgpGatnaltalaeAkvdriPllvlsgdrptslrg.............qgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtals 149
                   +vv+vt    +   +  l +A +  +P+lvl  ++ +                 q ++++  d + l++ + +   r+++p+el+  l++A+++   
    CTQ26413.1 441 MVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNNRYLGMVkqwqdmlysgrhsQSYMESLPDFVRLAEAYGHVGIRISEPQELETKLAEALEQV-- 535
                   55555555456666899999**********9999887666668999999998777777755599999***************************9.. PP

                   SS--EEEEEEE CS
  TPP_enzyme_N 150 grpgPvylelp 160
                   ++++ v++++ 
    CTQ26413.1 536 RQRRLVFVDVT 546
                   55556777765 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.18   4.6e+02     109     152 ..     114     160 ..     101     161 .. 0.78
   2 !  166.7   0.0   1.2e-52     3e-49       1     153 []     394     545 ..     394     545 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.18
                   ----HHHHHHHTTSE.EEEESSH.HHHHHHHHHHHH.....CSSSEEEEE CS
  TPP_enzyme_C 109 kpvdfaklaealGak.garvekadveeleealkeal.....ekkgpalie 152
                   ++ d++ + + + +k  + v+++  e++  +lk+a+      + gp++++
    CTQ26413.1 114 QECDMVGISRPV-VKhSFLVKQT--EDIPGVLKKAFwlaasGRPGPVVVD 160
                   556666666666.5546677777..**********999999999999998 PP

  == domain 2  score: 166.7 bits;  conditional E-value: 1.2e-52
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   d+G++++ aa ++++ +pr++++sgglgtmG+glpaA+G+k+a pd+ vv+++GDG+++m++qel+ta ++ lp++v+ lnN+++gm++++q++ ++
    CTQ26413.1 394 DVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPDEMVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMLYS 490
                   89*********************************************************************************************** PP

                   CTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHH...CSSSEEEEEE CS
  TPP_enzyme_C  98 krksgpagkdlkpvdfaklaealGakgarvekadveeleealkeal...ekkgpaliev 153
                   +r+s+ +   +  +df++laea+G  g+r++++  +ele +l+eal   ++++ ++++v
    CTQ26413.1 491 GRHSQSYM--ESLPDFVRLAEAYGHVGIRISEP--QELETKLAEALeqvRQRRLVFVDV 545
                   ****9873..5555***************9999..***********8888888888886 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.0   0.0   4.3e-50   1.1e-46       1     136 [.     196     330 ..     196     331 .. 0.99

  Alignments for each domain:
  == domain 1  score: 158.0 bits;  conditional E-value: 4.3e-50
                   HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   i++a++ l aa++pv++vGgg+++++++ +lrel+ekl++Pv+++lmg g++p +h + lgmlg+hg+++an+ ++++D+++a+G+rfdd rtt++ 
    CTQ26413.1 196 IKRALQTLVAASKPVVYVGGGAINAHCEPQLRELVEKLKLPVASSLMGLGAFPATHSQALGMLGMHGTYEANMTMHHSDVIFAVGVRFDD-RTTNNL 291
                   799***************************************************************************************.999999 PP

                   TTTTTT-EEEEEESSCCCCTTCC--SEEEECTHHHHHHH CS
  TPP_enzyme_M  98 pefapeakiihididpaeigknyqvdlaivgdvketlea 136
                    +++p+a+++hididp++i+k++++d++ivgd++ +le+
    CTQ26413.1 292 AKYCPNATVLHIDIDPTSISKTVPADVPIVGDARLVLEQ 330
                   9************************************98 PP

>> POR_N  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.5   5.3e-06     0.014      38      95 ..      43     102 ..      26     117 .. 0.86
   2 ?   -3.3   0.0       2.4   6.1e+03     134     152 ..     453     471 ..     450     473 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.3e-06
                 .EEEE-SSHHHHHHHHHH.HHCTT-EEEE.EEECCHHHHCCCCHHHHHHTT--EEEEEEE CS
       POR_N  38 vevvqmesEigaisaviG.AaaaGaraaT.aTSgqGllLmienlglaageelPvvivvva 95 
                 ++ v +  E +a+ ++ G A a+G  +++  TSg+G   +i  +  a ++ +P+vi   +
  CTQ26413.1  43 IDHVLVRHEQAAVHMADGlARATGEVGVVlVTSGPGATNAITGIATAYMDSIPLVILSGQ 102
                 46677889**********88899*9987747************************98765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHCTSEEEEE CS
       POR_N 134 lalvAfnlAekvrvPvivl 152
                 + ++ + +A+++++Pv+vl
  CTQ26413.1 453 MNIQELSTALQYELPVLVL 471
                 5667788999999999986 PP

>> Kindlin_2_N  Kindlin-2 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.7e-05     0.044       7      67 ..     300     361 ..     294     374 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
  Kindlin_2_N   7 eLkitvtdleikkevelkirvkgdlh.iGgvmlklvekldikkdwsDyalWWekkkkWLkkt 67 
                   L i ++ ++i+k+v   + + gd   + + ml l e+ ++++ + D   WW++  +W  + 
   CTQ26413.1 300 VLHIDIDPTSISKTVPADVPIVGDARlVLEQMLELLEQEEAQQPLDDIRDWWQQIEQWRARH 361
                  68999***************99998736799***************************7664 PP

>> ROQ_II  Roquin II domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.9   4.9e+03      30      52 ..     354     379 ..     353     381 .. 0.70
   2 ?   10.9   0.2   0.00012       0.3      30      52 ..     481     503 ..     479     507 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.9
      ROQ_II  30 peqWSa...lLYgdqdhrshmqSiid 52 
                 +eqW a   l Y dq  + + q +i+
  CTQ26413.1 354 IEQWRArhcLRYDDQSDKIKPQAVIE 379
                 57886444478999988888888776 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00012
      ROQ_II  30 peqWSalLYgdqdhrshmqSiid 52 
                 + qW  +LY  ++ +s+m+S+ d
  CTQ26413.1 481 VKQWQDMLYSGRHSQSYMESLPD 503
                 68******************977 PP

>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00011      0.27     140     169 ..     421     450 ..     412     462 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
       XFP_N 140 GelGyalshayGavldnPdlivacvvGdGe 169
                 G +G+ l  a G  +  Pd +v+cv GdG 
  CTQ26413.1 421 GTMGFGLPAALGVKMALPDEMVVCVTGDGS 450
                 689**************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4247.26
//
Query:       CTQ26414.1  [L=173]
Description: acetolactate synthase isozyme III, small subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-26   90.1   0.6    7.9e-24   83.7   0.2    2.2  2  ALS_ss_C    Small subunit of acetolactate synthase
    1.7e-16   59.8   0.0      4e-16   58.6   0.0    1.7  1  ACT_5       ACT domain
    4.4e-14   51.9   0.0      8e-14   51.1   0.0    1.5  1  ACT         ACT domain
    1.9e-05   25.1   0.2     0.0003   21.3   0.1    2.2  2  ACT_4       ACT domain
  ------ inclusion threshold ------
      0.073   13.3   0.1       0.47   10.7   0.0    2.1  2  UvrB_inter  UvrB interaction domain


Domain annotation for each model (and alignments):
>> ALS_ss_C  Small subunit of acetolactate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0085        31      35      57 ..      54      76 ..      46      88 .. 0.82
   2 !   83.7   0.2   2.2e-27   7.9e-24       1      74 []      94     168 ..      94     168 .. 0.98

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0085
                TEEEEEEEE-HHHHHHHHHHS-G CS
    ALS_ss_C 35 dsliieltgteekidaliellkp 57
                + ++i+ +g+e+ i+++ + l +
  CTQ26414.1 54 SRMTIQTVGDEKAIEQIEKQLHK 76
                569**************999965 PP

  == domain 2  score: 83.7 bits;  conditional E-value: 2.2e-27
                 EEEEEEEEE.-SCHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHS-GGG.EEEEEEEEEEEEEST CS
    ALS_ss_C   1 RElaLiKVkaekeerseileiaeifrakivdvspdsliieltgteekidaliellkpfg.ilevvRtGrvAleRG 74 
                 RE++L+KV+a+   r+e+++ +eifr++i+dv+p+ ++++l+gt++k+da++  l+++  i+ev+R+G+v+l+RG
  CTQ26414.1  94 REIMLVKVQASGYGREEVKRNTEIFRGQIIDVTPSIYTVQLAGTSDKLDAFLASLRDVArIVEVARSGVVGLSRG 168
                 9*******************************************************8888**************8 PP

>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   1.1e-19     4e-16       2      62 .]      22      83 ..      21      83 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 1.1e-19
       ACT_5  2 apgvLeRvlrvvrrrgFevkslnmsttedggtvrieltVes.ersvelLsnQleKLidVlkV 62
                + g+L Rv++++++rg++++sl++ +t+d + +r++++  + e+++e++ +Ql KL+dVl+V
  CTQ26414.1 22 ESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGdEKAIEQIEKQLHKLVDVLRV 83
                579********************************************************998 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   2.2e-17     8e-14       2      66 ..      14      78 ..      13      79 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 2.2e-17
                EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT  2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkle 66
                +l+v+++++ G+L+rv g++++rg+Ni+s+++++++d   +++++  v+de+ +e+++++l+kl 
  CTQ26414.1 14 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKAIEQIEKQLHKLV 78
                699************************************************************96 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   8.2e-08    0.0003       9      78 ..      15      83 ..      13      84 .. 0.90
   2 ?    1.7   0.0      0.11     4e+02      60      80 .]     139     159 ..     130     159 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.2e-08
       ACT_4  9 leveaedrkglLaditqviseekanivsvnaktrkkdglaeikitve.VkdvehLsrviakLraipgVisV 78
                l+v  e+++g+L++++ ++s+ + ni+s+++  +  d  +  ++t++ V d + ++++ ++L+++ +V +V
  CTQ26414.1 15 LSVLLENESGALSRVIGLFSQRGYNIESLTVAPT--DDPTLSRMTIQtVGDEKAIEQIEKQLHKLVDVLRV 83
                68999****************************6..4577777777559********************99 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.11
       ACT_4  60 ehLsrviakLraipgVisVeR 80 
                 ++L+  +a+Lr +  + +V R
  CTQ26414.1 139 DKLDAFLASLRDVARIVEVAR 159
                 67999999***********99 PP

>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.23   8.3e+02      33      66 ..      31      70 ..       8      78 .. 0.59
   2 ?   10.7   0.0   0.00013      0.47       3      48 ..      86     129 ..      85     154 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.23
  UvrB_inter 33 GtFrvrGdtve...ifpasaeevairieffg....deiesi 66
                G F+ rG ++e   + p + + +  r++++     + ie+i
  CTQ26414.1 31 GLFSQRGYNIEsltVAPTD-DPTLSRMTIQTvgdeKAIEQI 70
                5566666555522134444.444555444433333444444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00013
  UvrB_inter   3 lkvgqkidreellrkLvelqYerndvelkrGtFrvrGdtveifpas 48 
                 l +g++++re +l k    +Y r++v  kr t   rG+++++ p+ 
  CTQ26414.1  86 LGQGAHVEREIMLVKVQASGYGREEV--KRNTEIFRGQIIDVTPSI 129
                 7899********************96..77777889******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1315.60
//
Query:       CTQ26415.1  [L=334]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-19   68.8   0.8    5.3e-19   67.7   0.8    1.6  1  LacI            Bacterial regulatory proteins, lacI family
    4.3e-13   49.3   0.0    5.8e-13   48.9   0.0    1.1  1  Peripla_BP_1    Periplasmic binding proteins and sugar bindin
    2.3e-11   44.3   0.1    5.4e-10   39.9   0.0    2.3  2  Peripla_BP_3    Periplasmic binding protein-like domain
    5.1e-10   39.3   0.0    6.6e-10   39.0   0.0    1.1  1  Peripla_BP_4    Periplasmic binding protein domain
     0.0028   17.7   0.3     0.0087   16.2   0.1    2.0  2  DUF4543         Domain of unknown function (DUF4543)
  ------ inclusion threshold ------
      0.019   15.0   0.0      0.046   13.8   0.0    1.7  1  HTH_3           Helix-turn-helix
       0.07   12.5   2.3        3.7    6.9   0.1    3.1  3  LysR_substrate  LysR substrate binding domain


Domain annotation for each model (and alignments):
>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.8   2.1e-22   5.3e-19       1      46 []       2      50 ..       2      50 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 2.1e-22
                -HHHHHHHCTS-HHHHHHHCTTS...SSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnk...erVseetrerVeaameelnYiPn 46
                +++++ArlAGVS +T+S+v+n+k   +rVs++t e+V+a+++e+nY+Pn
  CTQ26415.1  2 KLDEIARLAGVSRTTASYVINGKakqYRVSDKTVEKVMAVVREHNYHPN 50
                589*********************************************9 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   2.3e-16   5.8e-13       2     267 ..      62     312 ..      61     326 .. 0.84

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 2.3e-16
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE.-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS- CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliia.tsdtsfdditakaesgipvialedaidapdgvP 96 
                    ++glv+p+l++  +  + + +++ a++ g+++l+   ++++d + + i+ l+++++d++i+  ++ ++ +  ++ a+   p++al++a d      
    CTQ26415.1  62 RSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEmRCIEHLLQRQVDAIIVStSLPPEHPFYQRWANDPFPIVALDRALDRE-HFT 157
                   68*******************************9999999****99****************94555568999999999************99.777 PP

                   EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHH CS
  Peripla_BP_1  97 cvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaal 193
                   +v+ +d   +e    +L     +  ++ l++    + +  r qGf+ a+++   + +   +   s ++e+aa++ ++ le hP  +a+ + +     
    CTQ26415.1 158 SVVGADQDDAEMLAAELRTFPGET-VLYLGALPELSVSFLREQGFRKAWQDD--PREVHYLYANSYEREAAAQLFEKWLETHPMPQALFTTSFPLLQ 251
                   777777776777777777777777.9****999999****************..66778899999*****************776699999999998 PP

                   HHHHHHH.HTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEEE-- CS
  Peripla_BP_1 194 Gavlalk.keGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkerehpr 267
                   G + +++  eG+l  + ++     +  + ++L       l+ ++lav+q +     r ++++vl+++ +  ++pr
    CTQ26415.1 252 GVMDVTLrREGKLPSELAI-----ATFGDNEL----LDFLQCPVLAVAQRH-----RDVAERVLEIVLASLDEPR 312
                   8876655167777777777.....66666666....666788899999999.....7888888887765555555 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.078     2e+02       8      81 ..      60     124 ..      52     172 .. 0.70
   2 !   39.9   0.0   2.1e-13   5.4e-10      14     165 ..     184     330 ..     180     331 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.078
                   S--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC-SEEEEES CS
  Peripla_BP_3   8 Ghrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalll.qalklaalPtAviaa 81 
                   + r+i+++   +d ++++++++   +++ +++ g++l +    +d+p+++ +  + l l +++      +A+i+ 
    CTQ26415.1  60 RTRSIGLVI--PDLENTSYTRIANYLERQARQRGYQLLIACS-EDQPDNEMRCIEHL-LqRQV------DAIIVS 124
                   478899999..5555677777777777777999999998865.55554444444433.32333......555554 PP

  == domain 2  score: 39.9 bits;  conditional E-value: 2.1e-13
                   EEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC..-SEEEEESSCCHHHHHHHHHCCTT--TTTTEEEEB CS
  Peripla_BP_3  14 figgegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaa..lPtAviaasDelAlgvlqalreaglrvPedlsvig 108
                   ++g     ++s s +re+gfr+a ++   +++  ++++ + +aaa + +++      l++  +P+A++ +s  l +gv+ +  +++ + P +l++  
    CTQ26415.1 184 YLG--ALPELSVSFLREQGFRKAWQDDPREVHYLYANSYEREAAAQLFEKW------LEThpMPQALFTTSFPLLQGVMDVTLRREGKLPSELAIAT 272
                   555..6667788889***********9999998888887777766666643......455569****************9888888889******** PP

                   SS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEE.E--EEE--GG CS
  Peripla_BP_3 109 fddselaalssPplTtvrqpleelGraaaellldllegekappeqvl.lppelveReS 165
                   f d el+ +++ p+ +v+q  ++++++++e++l+ l+++++p +  + +  +l  R+S
    CTQ26415.1 273 FGDNELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLSrIRRNLYRRGS 330
                   ***9********************************9999998888889999999998 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   2.6e-13   6.6e-10       1     202 [.      64     257 ..      64     309 .. 0.82

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 2.6e-13
                   EEEEES-SSTC.HHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-C CS
  Peripla_BP_4   1 igvvvkdksnp.ffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsger 96 
                   ig+v++d +n+ + + + + le +a++ g++  + + +e +   +   ie +++++vd+iiv+   +++  p+ ++ ++   p+va d++  + +  
    CTQ26415.1  64 IGLVIPDLENTsYTR-IANYLERQARQRGYQLLI-ACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-HPFYQRWANDPFPIVALDRA-LDREHF 156
                   899********7777.**************9999.688888899*******************888855.48******************.****** PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-T.TCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESS CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeyp.gikivaevaganwdaekaqqalealltanp.ldgilaan 191
                   +++vg+d+ +a e++a  l    +g   +v++l + p  + + +r++gfrk+ +++p ++ ++    +  +++e a q  e++l  +p  ++ ++++
    CTQ26415.1 157 TSVVGADQDDA-EMLAAELR-TFPG--ETVLYLGALPELSVSFLREQGFRKAWQDDPrEVHYLY---ANSYEREAAAQLFEKWLETHPmPQALFTTS 246
                   ********997.44444444.4454..489999999***************************9...4359**************998778888877 PP

                   CCHHHCHHHHH CS
  Peripla_BP_4 192 dgmaegaleal 202
                       +g+++ +
    CTQ26415.1 247 FPLLQGVMDVT 257
                   77777776654 PP

>> DUF4543  Domain of unknown function (DUF4543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.1     1e+04      31      43 ..     103     115 ..      97     118 .. 0.65
   2 !   16.2   0.1   3.4e-06    0.0087      27      66 ..     202     241 ..     194     249 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.1
     DUF4543  31 pdePmreyllylq 43 
                 pd+ mr   + lq
  CTQ26415.1 103 PDNEMRCIEHLLQ 115
                 7888885444444 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 3.4e-06
     DUF4543  27 kaGypdePmreyllylqrleqraeeqflehWlnPhckPrc 66 
                 +  ++d+P   + ly    e+ a  q +e+Wl+ h +P+ 
  CTQ26415.1 202 RKAWQDDPREVHYLYANSYEREAAAQLFEKWLETHPMPQA 241
                 44589***999************************99975 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.8e-05     0.046      11      44 ..       2      38 ..       1      42 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
                HHHHHHHHHTSSHHHHHHHHTT...SSCSBHHHHHHH CS
       HTH_3 11 sqeeLAeklGvsrstisriEnG...ernPsletlkkl 44
                 + e+A+++Gvsr+t s  +nG   + + s +t++k+
  CTQ26415.1  2 KLDEIARLAGVSRTTASYVINGkakQYRVSDKTVEKV 38
                5689******************887777777777775 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0014       3.7      43      87 ..     105     149 ..      87     172 .. 0.89
   2 ?    3.8   0.0     0.013        32     151     206 ..     184     235 ..     181     237 .. 0.83
   3 ?   -1.0   0.1      0.36   9.3e+02      51      80 ..     249     278 ..     248     300 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0014
                     SHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETT CS
  LysR_substrate  43 dseelldllaegelDlairagppedsglearpLaeeplvlvaspd 87 
                     +  ++++ l+++++D+ i++  +++++  ++++a++p+ +va + 
      CTQ26415.1 105 NEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDR 149
                     55689999*****************************98888655 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.013
                     -BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCCHHHHHHHHHHHHH CS
  LysR_substrate 151 Giallprsavrdeladgrlvalplpepplprelylvyrkgrelspavrafidflre 206
                      ++ lp++ v  +l++ + +   +++   pre++ +y  + e+ +a++ f  +l +
      CTQ26415.1 184 YLGALPELSV-SFLREQGFR-KAWQD--DPREVHYLYANSYEREAAAQLFEKWLET 235
                     5788999999.889999999.88888..45888888888888********999975 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.36
                     HHTTSSSEEEEESSSCCTTEEEEEEEEEEE CS
  LysR_substrate  51 laegelDlairagppedsglearpLaeepl 80 
                     l++g +D+ +r++   +s+l +  +++++l
      CTQ26415.1 249 LLQGVMDVTLRREGKLPSELAIATFGDNEL 278
                     678999999999999999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      664  (0.037035); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2568.26
//
Query:       CTQ26416.1  [L=152]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-44  149.8   0.0    2.6e-22   78.6   0.0    2.1  2  MraZ      MraZ protein, putative antitoxin-like


Domain annotation for each model (and alignments):
>> MraZ  MraZ protein, putative antitoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.0   1.5e-26   2.6e-22       1      71 [.       1      75 [.       1      76 [. 0.95
   2 !   69.5   0.0   9.9e-24   1.8e-19       1      61 [.      77     137 ..      77     149 .. 0.89

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 1.5e-26
                CCTTEEEEEB-TTSEEE--CHHHHHTTSC....SEEEEEECCSEEEEEEHHHHHHHHHCHHTS-CCCHHHCHHHH CS
        MraZ  1 mfagatevelDakGRlllPaklreeakle....kevvviGvsncLeiwpraeWekyeeelaeeslsekaerallr 71
                mf+gat v+lD+kGRl++P+++re + ++     ++++++ + cL+++p+ eWe +e++l+++s++++ er+++r
  CTQ26416.1  1 MFRGATLVNLDSKGRLAVPTRYREGLIEDaagqLVCTIDIHHPCLLLYPLPEWEVIEQKLSRLSSMNPVERRVQR 75
                9**********************988877777699**************************************99 PP

  == domain 2  score: 69.5 bits;  conditional E-value: 9.9e-24
                 CCTTEEEEEB-TTSEEE--CHHHHHTTSCSEEEEEECCSEEEEEEHHHHHHHHHCHHTS-C CS
        MraZ   1 mfagatevelDakGRlllPaklreeaklekevvviGvsncLeiwpraeWekyeeelaeesl 61 
                 ++++a+e+++D +GRll+++ lr++a+l+kev+++G++n++e+w++++W + ++e++++  
  CTQ26416.1  77 LLGHASECQMDNAGRLLIAPVLRQHAGLTKEVMLVGQFNKFELWDETTWYQRVKEDIDAEQ 137
                 589************************************************9999865543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1124.31
//
Query:       CTQ26417.1  [L=313]
Description: S-adenosyl-dependent methyltransferase activity on membrane-located substrates [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     5e-121  404.0   0.0   5.6e-121  403.8   0.0    1.0  1  Methyltransf_5   MraW methylase family
     0.0046   17.6   0.0        1.1   10.0   0.0    2.4  2  Methyltransf_25  Methyltransferase domain
      0.007   16.2   0.0       0.52   10.1   0.0    2.2  2  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.011   16.7   0.0       0.14   13.2   0.0    2.3  2  Methyltransf_24  Methyltransferase domain
      0.051   14.2   0.0         15    6.3   0.0    2.4  2  Methyltransf_11  Methyltransferase domain
       0.13   12.3   0.0       0.92    9.6   0.0    2.0  1  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_5  MraW methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.8   0.0  1.9e-124  5.6e-121       2     308 ..       5     310 ..       4     311 .. 0.97

  Alignments for each domain:
  == domain 1  score: 403.8 bits;  conditional E-value: 1.9e-124
                     XXX--TTTHHHHHHT---TT-EEEES--TTSHHHHHHHTT--TT.EEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHHHHTT.TT-EE CS
  Methyltransf_5   2 leHvpVLlqevvellepkedgvyiDaTlGaggHsealLeqlsel.rligidrDksalarakerLkefekrltlvkgnfkelkealaean.vtkvd 94 
                     ++H++VLl+e+v++l++++dg+yiD+T+G+ggHs+ +L++l ++ rl++idrD++a+a+a++       r+++v+g f++l+e++ e+n  +k+d
      CTQ26417.1   5 YKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSRLGAEgRLLAIDRDPQAIAVAQT---IDDPRFSIVHGPFSQLAEYVGERNlTGKID 96 
                     79****************************************999****************9...34457*******************888*** PP

                     EEEEE-S--HHHHH-GGG---SSS--BS---S-TTSS--HHHHHHH--HHHHHHHHHHHH--TTHHHHHHHHHHHHHHS---BHHHHHHHHHHHS CS
  Methyltransf_5  95 gillDLGvSslqldkaerGFsfaedapLDmRmdqsaeltAaevlnrlseeeLakilkeygeekfakriakaivekrkkkpiettkelaevikkvv 189
                     gillDLGvSs+qld+aerGFsf++d+pLDmRmd+++ ++Aae+l++ +e ++a+++k++gee+f kria+aive+++ +p+++tkelaevi++++
      CTQ26417.1  97 GILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEDDIAWVIKTFGEERFGKRIARAIVERNRIQPMTRTKELAEVIAAAM 191
                     *********************************************************************************************** PP

                     -------..-TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTT------------------....-EEEE CS
  Methyltransf_5 190 pakekrkkihpatrvFQAlRIavNdEleeleelleaalellakggrlavisFhSledrivkkvfkeaskkeevPaglpvaseelka....klkli 280
                     p k+k+k  hpatr+FQA+RI+vN+Elee+e++l+++l++la+ggrl++isFhSledrivk++++e+s+ ++vPag+p+++ +lk+    +l+++
      CTQ26417.1 192 PVKDKHK--HPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGRLSIISFHSLEDRIVKRFMREQSRGPQVPAGIPMTEAQLKKlggrELRAL 284
                     *****99..***************************************************************************99888789999 PP

                     E.E.E---HHHHHH-GGGTT-EEEEEEE CS
  Methyltransf_5 281 tkkpilpseeeikeNprsrsakLrviek 308
                     +   ++p+eee++eNpr+rs+ Lr++e+
      CTQ26417.1 285 G--KLMPGEEEVAENPRARSSVLRIAER 310
                     9..48*********************98 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00037       1.1       6      59 ..      32      83 ..      28     116 .. 0.84
   2 ?    5.4   0.0      0.01        30      61      97 .]     201     234 ..     169     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00037
                     -TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS CS
  Methyltransf_25  6 cGtGrltlalakrlg.kakvtgvDiseemleaareraeeeglnvefvqgdaedlp 59
                      G+G +++ ++ rlg +++++++D ++++++ a++     ++++++v+g +++l 
       CTQ26417.1 32 FGRGGHSRLILSRLGaEGRLLAIDRDPQAIAVAQTID---DPRFSIVHGPFSQLA 83
                     699********999779***************99866...578888888777765 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.01
                      STTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  61 edgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      + ++f +v ++ +    + e++e+alk   +vL pgG
       CTQ26417.1 201 ATRTFQAVRIWVN---SELEEIEQALKSSLSVLAPGG 234
                      4568888888744...345799**************9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00018      0.52      13      47 ..      33      67 ..      25     101 .. 0.87
   2 ?    3.9   0.0     0.014        41      91     126 ..     220     256 ..     203     285 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00018
  Methyltransf_31 13 GtGeltfelaeelgpkaevvGiDiseeaielAren 47
                     G G  +  + ++lg ++++  iD++++ai +A+++
       CTQ26417.1 33 GRGGHSRLILSRLGAEGRLLAIDRDPQAIAVAQTI 67
                     78888999999*********************996 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.014
  Methyltransf_31  91 dkileeiervlkpggilliedprllaelp.akveees 126
                      +++l++  +vl pgg+l i +++ l++ + + + +e+
       CTQ26417.1 220 EQALKSSLSVLAPGGRLSIISFHSLEDRIvKRFMREQ 256
                      67889999*************9966555544444444 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.6e-05      0.14       7      88 ..      34     112 ..      20     124 .. 0.76
   2 ?    1.2   0.0      0.25   7.5e+02      67     103 ..     202     241 ..     130     244 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.6e-05
  Methyltransf_24   7 sGvstlwllralrrngagrlvavdhdpgaeeaaalareaglddrvrlikadseealasla....agsiDllfiDgghaaeavledl 88 
                       G  + ++l+ l + g  rl+a+d dp   +a a+a++   d r+ +++++++++++ +     +g+iD +++D g + +  l+d 
       CTQ26417.1  34 RGGHSRLILSRLGAEG--RLLAIDRDP---QAIAVAQT-IDDPRFSIVHGPFSQLAEYVGernlTGKIDGILLDLG-VSSPQLDDA 112
                      5666667776666655..7********...77777766.77789********9988855555678*********99.555555555 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.25
  Methyltransf_24  67 agsiDllfiDgghaaeavledleallprlapgg...vvlf 103
                      ++++  + i  + + e+  ++l+  l +lapgg   ++ f
       CTQ26417.1 202 TRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGrlsIISF 241
                      5566666666666678888888888999999984445555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0082        24       6      55 ..      33      82 ..      28      88 .. 0.71
   2 ?    6.3   0.0     0.005        15      71      95 ..     213     237 ..     183     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0082
                     TTSHHHHHHH.HTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT CS
  Methyltransf_11  6 GtGrlaeala.krg..arvvgvDlskemlklakekaseeglkvefvvadaekl 55
                     G+G +++ +  + g  +r++++D +++++++a++   +++  +++v++ +++l
       CTQ26417.1 33 GRGGHSRLILsRLGaeGRLLAIDRDPQAIAVAQTID-DPR--FSIVHGPFSQL 82
                     55555555443777999************9996544.444..56777777765 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.005
                      CCC-CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  71 lhhvedpekalkeiaRvLkpgGllv 95 
                         +e+ e+alk    vL pgG+l 
       CTQ26417.1 213 NSELEEIEQALKSSLSVLAPGGRLS 237
                      445689****************996 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00031      0.92      19      86 ..      21     182 ..      10     258 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00031
                 S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS.....HHH..TTEEEECS-CCCSSHHHHHCHCHHH......................... CS
        FtsJ  19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.....apl..pgvttiqgditdpetiekikealse......................... 85 
                 ++p++  +D  ++ Gg s  +l rlga+g+++a+D  p      + +  p+ ++++g + + +     ++++++                         
  CTQ26417.1  21 IRPDGIYIDGTFGRGGHSRLILSRLGAEGRLLAIDRDPQaiavaQTIddPRFSIVHGPFSQLAEYVGERNLTGKidgilldlgvsspqlddaergfsfm 119
                 4577788999999**********************9887666654446788888877776665554333333224444444444444555555555555 PP

                 ..............................................................S CS
        FtsJ  86 ..............................................................r 86 
                                                                               +
  CTQ26417.1 120 rdgpldmrmdptrgqsaaewlqtaeeddiawviktfgeerfgkriaraivernriqpmtrtkE 182
                 555555555555555555555555555555555555555555555555555555555554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2231.01
//
Query:       CTQ26418.1  [L=121]
Description: membrane bound cell division protein at septum containing leucine zipper motif [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-36  121.7   0.1    1.1e-35  121.5   0.1    1.1  1  FtsL      Cell division protein FtsL
     0.0096   15.7   0.1      0.013   15.3   0.1    1.1  1  DivIC     Septum formation initiator


Domain annotation for each model (and alignments):
>> FtsL  Cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   0.1   1.3e-39   1.1e-35       2      96 ..      25     119 ..      24     120 .. 0.97

  Alignments for each domain:
  == domain 1  score: 121.5 bits;  conditional E-value: 1.3e-39
        FtsL   2 skiilkdllsvgkvlllllllvlvsavavvlithqtRqlvselekllserdkLeeewrnLlLEestlsahsrvesiAreqLkMkrpspeeeviis 96 
                 + +i +dll++gk+ l+l+++++++a++vv+++h+tR l++++e+l+ erd+L++ewrnL+LEe++l++hsrve+iA+e+L+M++++p++e+i+ 
  CTQ26418.1  25 PGVIGDDLLRFGKLPLCLFICIIITAITVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIATEKLQMQHVDPSQENIVV 119
                 568999**************************************************************************************996 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.4e-06     0.013       1      67 [.      42     107 ..      42     111 .. 0.97

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.4e-06
                 XXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXXX CS
       DivIC   1 llllfllllifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerARselgl 67 
                 l++++++ +i+++ + +  + l +++++l  e ++l  e ++L  e + L  d +++e++A ++l++
  CTQ26418.1  42 LFICIIITAITVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENAL-GDHSRVERIATEKLQM 107
                 6899**********************************************.9*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 903.02
//
Query:       CTQ26419.1  [L=85]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 662.23
//
Query:       CTQ26420.1  [L=588]
Description: transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-84  283.9   0.1    1.8e-84  283.6   0.1    1.1  1  Transpeptidase  Penicillin binding protein transpeptidase dom
    2.3e-23   83.4   0.0    7.5e-22   78.5   0.0    2.2  1  PBP_dimer       Penicillin-binding Protein dimerisation domai
  ------ inclusion threshold ------
      0.096   12.1   0.0       0.17   11.2   0.0    1.3  1  DUF1616         Protein of unknown function (DUF1616)


Domain annotation for each model (and alignments):
>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.6   0.1   2.9e-88   1.8e-84       1     305 [.     260     554 ..     260     555 .. 0.96

  Alignments for each domain:
  == domain 1  score: 283.6 bits;  conditional E-value: 2.9e-88
                     EEEEEEETTT-BEEEEEEESE-TTTHHCC.TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS.ECTCCCC-.SSSS CS
  Transpeptidase   1 gaavvldaktgevlamaskpsydpnakvg.kneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqsikdweqdn.kgse 93 
                     g+av++d +tgevlama++psy+pn+++g  +++++nra+++++ePGSt+K++++++al++g+++++++l++ +++      i+++e+++ +++ 
      CTQ26420.1 260 GSAVLVDVNTGEVLAMANSPSYNPNNFAGtAKDTMRNRAITDVFEPGSTVKPMVVMTALQRGIVNENTVLNTVPYR------INGHEIKDvARYS 348
                     79***************************9999*****************************************98......6678888777788 PP

                     EEEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--.B--S.SH..HHHHHHHHTTTSBB-HHHHHHHHHHHHTTTEEE- CS
  Transpeptidase  94 gitlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaG.vptr.kw..legatisfgiGltvtplqlaqayaaiangGklvk 184
                     ++tl+ +l+kSsn++++kla +++ + l +++++fglG+ t+++l ge++G +p++ +w  +e+at+sfg+Gl vtplqla++ya+i + G++++
      CTQ26420.1 349 ELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLGLVGERSGlYPQKqRWsdIERATFSFGYGLMVTPLQLARVYATIGSYGIYRP 443
                     99*************************************************9888855699********************************** PP

                     -BSEEEEEECTTEEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCGTCTTS--EEEEEEEEECSSSTTSEEEEEEEEEEEEEESTTS-SE CS
  Transpeptidase 185 PhlvkaivdpdgvrkvkpkelnklpisketaekvkeglkgvvsrgsgtataavegykvagKTGTAevagkkgngkkegakiswfvgyapadnpky 279
                     ++++          kv+p++++++++ ++ +++v +++++v+  g g ++aa++gy++a KTGTA+++g++g+    +++i+  +g+apa++p++
      CTQ26420.1 444 LSIT----------KVDPPVPGERVFPESLVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRY--INKYIAYTAGVAPASHPRF 526
                     ****..........7******************************************************88765..5678*************** PP

                     EEEEEECTCS..SSSSCCHHHHHHHHHH CS
  Transpeptidase 280 avavlieqpk..eaaggkaaapiakkil 305
                     a++v+i++p+  +++gg+++ap++ +i+
      CTQ26420.1 527 ALVVVINDPQagKYYGGAVSAPVFGAIM 554
                     ***************************9 PP

>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   1.3e-25   7.5e-22       5     178 ..      70     220 ..      66     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 1.3e-25
                 ----EE-TTS-EEEEEEEEEEEEEEESSS-HHHHHHHHHHHHHHCHHHTTS-HHHHHHHHCCCCTSSTTSCECCCCCEECHHHCCCHHHHHCSTT-EEE CS
   PBP_dimer   5 pRGeIyDrngrlLAtnrpsytltitpsklkkkkalekikklaklleseenldderleelalkknsykaykpvviaediseeevarikenakdlpGinie 103
                 +RG I Dr gr+LA ++p+ ++ ++p++l ++   + ++   k l++  n+  ++l     + n++ ++ ++ +a++++ + + +ik+ +  lpGi+ +
  CTQ26420.1  70 ARGMITDRSGRPLAVSVPVKAIWADPKELHDAGGVT-LDTRWKALADALNMPLDQLAT---RINTNPRMRFIYLARQVNPDMADYIKKLK--LPGIHLR 162
                 7******************************99875.666667776666788777777...8999*********************9766..99***** PP

                 EEEEEEETTTSTTHHHH-EEEEC-HHHHHCCCCHTCCTTCEEEESHHHHHTHHHHHECCCEEEEEEECTSSCCEE CS
   PBP_dimer 104 vepkRyYpkgelaahvlGyvgkiteeelekykekgyssgdliGksGlEkqyEeeLrGkkGkrqvkvdarGrilee 178
                 +e++RyYp+ge+ ah++G ++                   + G +G+Ek+++++L G+ G+r+v++d  Gr++e 
  CTQ26420.1 163 EESRRYYPSGEVTAHLIGFTNVD-----------------SQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVIED 220
                 ******************88765.................89******************************986 PP

>> DUF1616  Protein of unknown function (DUF1616)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.9e-05      0.17      43      69 ..     400     426 ..     398     440 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.9e-05
     DUF1616  43 LFPekrdidgieRlaLSfglSiaivpl 69 
                 L+P+k++ + ieR++ Sfg  ++++pl
  CTQ26420.1 400 LYPQKQRWSDIERATFSFGYGLMVTPL 426
                 9*************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4184.94
//
Query:       CTQ26421.1  [L=495]
Description: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-50  172.0   0.2    2.2e-50  171.3   0.2    1.3  1  Mur_ligase_M  Mur ligase middle domain
    3.7e-26   91.2   0.0    3.7e-25   88.0   0.0    2.5  2  Mur_ligase_C  Mur ligase family, glutamate ligase domain
    7.2e-13   48.7   0.4    3.2e-12   46.6   0.4    2.2  1  Mur_ligase    Mur ligase family, catalytic domain
  ------ inclusion threshold ------
       0.03   14.6   0.3       0.93    9.8   0.0    2.8  2  GGDEF_2       GGDEF-like domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.3   0.2   4.9e-54   2.2e-50       1     191 [.     114     318 ..     114     319 .. 0.93

  Alignments for each domain:
  == domain 1  score: 171.3 bits;  conditional E-value: 4.9e-54
                   EESSS-HHHHHHHHHHHHHCT...EEEEETTC............SS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCHCBESEEEE---TS CS
  Mur_ligase_M   1 vTGtnGKTTtteliaaileka...gkvigtvg............ttnneiglpktlaemekkeaeyavlEvsshglgekrlegllkpdvavitnisp 82 
                   vTGtnGKTTtt+l+a++ +      +v+gtvg            tt +++++++ l++++ ++a++ ++Evsshgl+++r+++ l++++ v+tn+s+
    CTQ26421.1 114 VTGTNGKTTTTQLLAQWAKLLgetSAVMGTVGnglldkvvptenTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAA-LQFAASVFTNLSR 209
                   9*****************99977667888888***************************************************.9************ PP

                   TTHHHHSSHHHHHHHHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTS......ECEEEEEEEEETTEEEEEEEEETTEEEEEE CS
  Mur_ligase_M  83 dHldfhgtlenyaeaKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekea......edlraknieeksegteiellevkggeleie 173
                   dHld+hg++e+y +aK+ l++ ++  g a++nadd++++++ +kl +a    v +++e++       ++l+a+ ++++++g +i++  +++g+ eie
    CTQ26421.1 210 DHLDYHGDMEHYEAAKWLLYSTHH-CGQAIVNADDEVGRRWLAKLPDA----VAVSMEDHInpnchgRWLKATAVNYHDSGATIQFD-SSWGKGEIE 300
                   *********************999.78*********999888888776....66677766667789999***************877.89******* PP

                   ESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M 174 ipllGkhnvyNalaaiaa 191
                   ++l+G +nv+N+l+a+a+
    CTQ26421.1 301 SRLMGAFNVSNLLLALAT 318
                   ***************996 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.0   8.3e-29   3.7e-25       1      91 []     339     425 ..     339     425 .. 0.96
   2 ?   -0.2   0.0      0.27   1.2e+03      28      53 ..     446     470 ..     443     485 .. 0.77

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 8.3e-29
                   CTTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEESS-TTSTHHHHH CS
  Mur_ligase_C   1 vkgRlevvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlgdypraedsiaai 91 
                   v gR+ev++  +++ v++Dyah+pd+l++al+a+r +   ++l++vfg+gg+   r++ +++++g++a+++ad++vv++d+pr+e+++a+i
    CTQ26421.1 339 VCGRMEVFSAPGKPAVVVDYAHTPDALEKALQAARLH-CSGKLWCVFGCGGD---RDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAII 425
                   68********************************888.67************...*******************************99875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.27
                   HHHHHHHHHHSSSSEEEEEEEESTT. CS
  Mur_ligase_C  28 saalkalreiapdkrlilvfgpggel 53 
                   +a+ +a+ +  +++ ++lv+g g e 
    CTQ26421.1 446 EAVTNAVMQA-KENDVVLVAGKGHED 470
                   5667777665.678999999986663 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.4   7.2e-16   3.2e-12       5      88 .]      25     102 ..      22     102 .. 0.94

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 7.2e-16
                 ESTTSCCHHHHHHHHHHTTSEEEEEESSHCHHHTT-EEEES-HGGGGEE-TS-TTCHHHHHHHHTTEEEEEHHHHHHHHHHCCE CS
  Mur_ligase   5 igidgrgmsagalflalkGykvdGsdfieslialGaaavvghdaanivvssiskdnpeleaakepgipvesraeaLaelaarfy 88 
                 +++d+r   +g+lf+a +G++ dG+++i+++ia+G+aa+++++++        kd +  e  ++p+i++ +++e L++la rfy
  CTQ26421.1  25 MTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQG------EAKDGEIREMHGVPVIYLSQLNERLSALAGRFY 102
                 789***************************************999......66778888899*******************998 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00021      0.93      23     100 ..      60     148 ..      55     150 .. 0.81
   2 ?    1.4   0.0     0.085   3.8e+02      75     116 .]     331     374 ..     307     374 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00021
     GGDEF_2  23 yvvvvieleedaer............llraleealralgpdalvavrgd.rlvlllpaedeedaeallerlarrlgglsvriGiGspvegl 100
                 ++++++e++++a +             l++l e l+al+ ++   + ++ rlv +  ++++++  +ll+++a+ lg+   ++  G++ +gl
  CTQ26421.1  60 VAAIIAEAQGEAKDgeiremhgvpviYLSQLNERLSALAGRFYHQPSQQlRLVGVTGTNGKTTTTQLLAQWAKLLGE--TSAVMGTVGNGL 148
                 567777776644444677778888888999********999999987777**************************9..888888887776 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.085
     GGDEF_2  75 allerlarrlgglsvriGiGsp..veglaglrrSyreArrAlrl 116
                 + ++rl+  +g+ +v  + G+p  v + a+ +++++ A++A+rl
  CTQ26421.1 331 KTAARLQPVCGRMEVFSAPGKPavVVDYAHTPDALEKALQAARL 374
                 56666666677777777777664468999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3941.04
//
Query:       CTQ26422.1  [L=452]
Description: UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-50  172.1   0.1      2e-50  171.5   0.1    1.3  1  Mur_ligase_M  Mur ligase middle domain
    2.4e-15   56.5   0.0    4.7e-14   52.4   0.0    2.6  2  Mur_ligase_C  Mur ligase family, glutamate ligase domain
    8.3e-13   48.5   0.1    8.8e-12   45.2   0.0    2.5  2  Mur_ligase    Mur ligase family, catalytic domain
     0.0048   16.6   0.0      0.011   15.5   0.0    1.6  1  LpxD          UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyl
  ------ inclusion threshold ------
       0.01   15.7   0.3      0.096   12.7   0.0    2.7  3  YAcAr         YspA, cpYpsA-related SLOG family


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.5   0.1   5.7e-54     2e-50       2     191 ..     106     292 ..     105     293 .. 0.97

  Alignments for each domain:
  == domain 1  score: 171.5 bits;  conditional E-value: 5.7e-54
                   ESSS-HHHHHHHHHHHHHCTEEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHC.TTTCCHCBESEEEE---TSTTHHHHSSHHHHHHH CS
  Mur_ligase_M   2 TGtnGKTTtteliaailekagkvigtvgttnneiglpktlaemekkeaeyavlEvsshglge.krlegllkpdvavitnispdHldfhgtlenyaea 97 
                   TG++GKT+++e++aail++ g+++ t+g++nn+ig+p tl++++k e++yav+E+++++ ge ++  +l++p++a+++n+  +Hl+ +g+l  +a+a
    CTQ26422.1 106 TGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTK-EHQYAVIELGANHQGEiAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKA 201
                   *********************************************.*************************************************** PP

                   HHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTC.EEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M  98 Kaelferlkeegiavinaddpyakelikklkkakvk.vvtfglekeaedlraknieeksegteiellevkggeleieipllGkhnvyNalaaiaa 191
                   K e++++l+e+gia++nad++   ++ ++ +  + + v++f+ ++ ++d+ a+n++ +s+gte++l  ++ g++++ +pl+G+hn++Nalaa+ +
    CTQ26422.1 202 KGEIYTGLPENGIAILNADNN---DWLNWQAVIGDRkVWRFSPNAANSDFTATNVQITSHGTEFTLQ-TPTGNVDVLLPLPGRHNIANALAATSL 292
                   *********************...9999999998888***************************887.99**********************876 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   1.3e-17   4.7e-14       1      79 [.     313     391 ..     313     403 .. 0.91
   2 ?    1.1   0.0      0.13   4.7e+02      51      84 ..     404     438 ..     399     445 .. 0.71

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 1.3e-17
                   CTTSSEEEEETTTEEEEEE.T--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSE.EEEEE CS
  Mur_ligase_C   1 vkgRlevvgeadgvtvidD.yahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasalads.lvvlg 79 
                   v+gRl +++ +++ +++dD y++n++s+ aa+++l e+ p + + +v+g+++elg  ++++h e+g++a+a+  + ++ +g
    CTQ26422.1 313 VPGRLFPIRLTESQLLLDDsYNANVGSMTAAVQVLSEM-P-GFRTMVVGDMAELGAESAACHREVGEAAKAAGLDcVLSVG 391
                   79*********************************999.5.89***************************98888565554 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.13
                   TT.CCSCHCTHHHHHHHHCCHSSE.EEEEESS-TT CS
  Mur_ligase_C  51 gelgertrtfhdefgrlasalads.lvvlgdypra 84 
                   ge +++ ++  +++ +l+++++++ ++v g  ++a
    CTQ26422.1 404 GEHFNDKAAVVARLRELLAEHKIMtILVKGSRSAA 438
                   44588999999999999999999944444444444 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   2.4e-15   8.8e-12       2      85 ..      24      92 ..      23     105 .. 0.83
   2 ?   -0.1   0.0      0.32   1.2e+03      35      52 ..     361     387 ..     351     425 .. 0.56

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 2.4e-15
                EEEESTTSCCHHHHHHHHHHTTSEEEEEESSHCHHHTT-EEEES-HGGGGEE-TS-TTCHHHHHHHHTTEEEEEHHHHHHHHHH CS
  Mur_ligase  2 ihfigidgrgmsagalflalkGykvdGsdfieslialGaaavvghdaanivvssiskdnpeleaakepgipvesraeaLaelaa 85
                i  +++d r+++ag+lf+alkG+++d +df+e+++a+Ga a++++++                a++ p++ v ++++a +elaa
  CTQ26422.1 24 IDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVSRPL---------------ACDLPQVIVSDTRQAFGELAA 92
                56799*******************************************...............666666666666666666654 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.32
                 HHHTT-EEEES-HGGGG.........E CS
  Mur_ligase  35 lialGaaavvghdaani.........v 52 
                 + +lGa+ + +h++            v
  CTQ26422.1 361 MAELGAESAACHREVGEaakaagldcV 387
                 667888888888666222223333440 PP

>> LpxD  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.9e-06     0.011      25      70 .]      52      93 ..      48      93 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.9e-06
                CCGGGCCC---SEEEEEHHHHCCHTTSCS.EESS-HHHHHHHHHHH CS
        LpxD 25 kylkqlattkAgavivppdlaealpanaalivvenPylafakllql 70
                 +++q+++  Aga++v++ la +lp+    ++v++ + af +l+++
  CTQ26422.1 52 DFAEQAKAAGAGALLVSRPLACDLPQ----VIVSDTRQAFGELAAW 93
                589*******************9996....**********999986 PP

>> YAcAr  YspA, cpYpsA-related SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.7   6.2e+03      32      44 ..      10      22 ..       8      26 .. 0.80
   2 ?   -1.5   0.0      0.72   2.6e+03      23      41 ..      93     110 ..      82     113 .. 0.73
   3 ?   12.7   0.0   2.7e-05     0.096       8      39 ..     404     435 ..     400     444 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.7
       YAcAr 32 mvlvhGgakGaDr 44
                ++++hG  +G D 
  CTQ26422.1 10 AAIAHGERQGSDV 22
                5799999999996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.72
       YAcAr  23 klhaeapidmvlvhGgakG 41 
                 ++++++p+  v++ +g++G
  CTQ26422.1  93 WVRQQVPT-RVVALTGSSG 110
                 78999996.5555555544 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 2.7e-05
       YAcAr   8 grdfadleliwatLdklhaeapidmvlvhGga 39 
                 g+ f+d+ ++ a+L +l+ae++i  +lv+G+ 
  CTQ26422.1 404 GEHFNDKAAVVARLRELLAEHKIMTILVKGSR 435
                 578*******************9444555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3493.70
//
Query:       CTQ26423.1  [L=360]
Description: phospho-N-acetylmuramoyl-pentapeptide transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-34  118.2  16.0    3.3e-34  118.2  16.0    2.1  3  Glycos_transf_4  Glycosyl transferase family 4
      1e-05   24.8   3.3      1e-05   24.8   3.3    2.7  2  MraY_sig1        Phospho-N-acetylmuramoyl-pentapeptide-transf
  ------ inclusion threshold ------
        1.9    8.6   8.4       0.49   10.4   0.8    3.2  2  OapA_N           Opacity-associated protein A N-terminal moti
        2.3    6.8   6.3      0.089   11.5   0.2    1.7  3  Ndc1_Nup         Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> Glycos_transf_4  Glycosyl transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.58   2.6e+03      28      45 ..      25      46 ..      18      93 .. 0.46
   2 !  118.2  16.0   7.5e-38   3.3e-34       2     159 ..      99     284 ..      98     285 .. 0.92
   3 ?   -2.5   0.1         1   4.5e+03      58      58 ..     339     339 ..     289     356 .. 0.47

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.58
  Glycos_transf_4 28 Klilqilaalililtld....l 45
                     + i+++l+al++ l+++    +
       CTQ26423.1 25 RAIVSLLTALFISLWMGprmiA 46
                     4555555555554444433331 PP

  == domain 2  score: 118.2 bits;  conditional E-value: 7.5e-38
  Glycos_transf_4   2 llllltillilllGflDDv........lglkarlKlilqilaalililtld.....lslttlgllltqvlielglilavlltllvivgvtNavN 82 
                      +++l +++ ++++Gf+DD+        +gl ar+K ++  ++al ++++l+     + +t+l +++++ ++    ++++ll+++vivg+ NavN
       CTQ26423.1  99 WCVLTVLIGYGIIGFVDDYrkvvrkdtKGLIARWKYFWMSVIALGVAFALYlagkdTPATELVVPFFKDVMPQLGLFYILLAYFVIVGTGNAVN 192
                      77899999**********9999999999*****************9999998888866667777766555555559****************** PP

  Glycos_transf_4  83 liDGldGlaagvsiiialalvvla...............avdgrsellllalallgallGfllfNrypAkvFmGDsgslflGlvlavlailg 159
                      l+DGldGla++ ++++a+ ++++a               ++++  el+++++a++ga lGfl+fN+ypA+vFmGD+gsl+lG+ l+++a+l+
       CTQ26423.1 193 LTDGLDGLAIMPTVFVAAGFALVAwatgnmnfanylhipYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGALGIIAVLL 284
                      ********************999999**********999999**********************************************9975 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1
  Glycos_transf_4  58 l 58 
                      +
       CTQ26423.1 339 I 339
                      1 PP

>> MraY_sig1  Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   3.3   2.2e-09     1e-05       1      13 []      68      80 ..      68      80 .. 0.97
   2 ?    0.7   1.5     0.097   4.4e+02       7      11 ..     293     297 ..     293     299 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2.2e-09
   MraY_sig1  1 KkGTPTMGGvlIi 13
                K+GTPTMGG++I+
  CTQ26423.1 68 KRGTPTMGGIMIL 80
                9***********7 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.097
   MraY_sig1   7 MGGvl 11 
                 MGGv+
  CTQ26423.1 293 MGGVF 297
                 ****8 PP

>> OapA_N  Opacity-associated protein A N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.8   0.00011      0.49      12      28 .]      76      94 ..      76      94 .. 0.95
   2 ?    0.3   1.5      0.17   7.5e+02      11      23 ..     342     354 ..     341     355 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
      OapA_N 12 lliaLslvvlvlllw..Ps 28
                ++++L+++++ +llw  Ps
  CTQ26423.1 76 GIMILTAITVSVLLWayPS 94
                69*************9998 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.17
      OapA_N  11 rlliaLslvvlvl 23 
                  ++i+L lv++ l
  CTQ26423.1 342 FWIISLMLVLIGL 354
                 5899****99987 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.4      0.85   3.8e+03      15      27 ..      26      38 ..      16      57 .. 0.54
   2 ?   11.5   0.2     2e-05     0.089     135     271 ..      98     234 ..      94     239 .. 0.89
   3 ?   -4.0   0.0      0.94   4.2e+03     236     252 ..     335     351 ..     324     352 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.85
    Ndc1_Nup 15 lllsyllslllsl 27
                +++s+l++l++sl
  CTQ26423.1 26 AIVSLLTALFISL 38
                2333333333333 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 2e-05
    Ndc1_Nup 135 lllsglvlalvysllhllfdrdrlsfkssfpivqpskyllkr.lpsilkkslilslvlllvspiiyylllrsfiws..lalillrlflnlprsaapppl 230
                  ++  l++ + y +  ++ d+ ++  k++   +   ky++ + +   ++++l l+   + ++ ++   +++ ++ +  l++ill  f+ + + +a+ ++
  CTQ26423.1  98 VWC-VLTVLIGYGIIGFVDDYRKVVRKDTKGLIARWKYFWMSvIALGVAFALYLAGKDTPATELV-VPFFKDVMPQlgLFYILLAYFVIVGTGNAVNLT 194
                 555.555556789999********99*************88879999999999999999888888.7888999999888899999999*********98 PP

    Ndc1_Nup 231 dslpfnlsLllrtlllgflllllwelanllFdvyltegplk 271
                 d l + l ++  +++++ + l++w ++n+ F  yl +++l+
  CTQ26423.1 195 DGLDG-LAIMPTVFVAAGFALVAWATGNMNFANYLHIPYLR 234
                 88887.*******************************9985 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 0.94
    Ndc1_Nup 236 nlsLllrtlllgfllll 252
                 + ++++r+++ +++l+l
  CTQ26423.1 335 EPRVIVRFWIISLMLVL 351
                 56789999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2877.80
//
Query:       CTQ26424.1  [L=438]
Description: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-29  101.3   0.0      1e-28  100.7   0.0    1.3  1  Mur_ligase_M   Mur ligase middle domain
    9.4e-09   35.4   0.0    7.7e-08   32.5   0.0    2.3  2  Mur_ligase_C   Mur ligase family, glutamate ligase domain
  ------ inclusion threshold ------
      0.048   14.1   0.1       0.14   12.6   0.0    1.9  2  NAD_binding_7  Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0   1.7e-32     1e-28       1     192 []     110     280 ..     110     280 .. 0.84

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 1.7e-32
                   EESSS-HHHHHHHHHHHHHCTEEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHC.TTTCCHCBESEEEE---TSTTHHHH.SSHHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvgttnneiglpktlaemekkeaeyavlEvsshglge.krlegllkpdvavitnispdHldfh.gtlenya 95 
                   +TG+nGK+T+t+l+ ++ ++ag  +g+ g+    iglp++++  +  + e++vlE+ss +l+  +     l+  +a+i+n+++dH+d++   l++y 
    CTQ26424.1 110 ITGSNGKSTVTTLVGEMAKAAGVNVGVGGN----IGLPALMLLDT--DRELYVLELSSFQLETtSS----LQAVAATILNVTEDHMDRYpLGLQQYR 196
                   8*****************************....******95544..59**********6655444....5568*************99889***** PP

                   HHHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEE..EEESSCSCHHHHHHHHHHH CS
  Mur_ligase_M  96 eaKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlraknieeksegteiellevkggele..ieipllGkhnvyNalaaia 190
                   +aK +++e+ k   + v+nadd     l+  ++ a+ + ++fg +  +       +++++ +t    l+vkg+++    e+pl+G+hn +Nalaa+a
    CTQ26424.1 197 AAKLRIYENAK---TCVVNADDA----LTMPVRGADERCISFGVDVGDY-----HLNRQQGETW---LRVKGEKVLnvKEMPLTGQHNYSNALAALA 278
                   ********999...89*******....666667777889*******982.....3444333333...44655555556799***************9 PP

                   HH CS
  Mur_ligase_M 191 aa 192
                   +a
    CTQ26424.1 279 LA 280
                   86 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.22   1.3e+03      40      73 ..     104     132 ..      81     139 .. 0.72
   2 !   32.5   0.0   1.3e-11   7.7e-08       2      67 ..     301     360 ..     300     379 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.22
                   SSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSS CS
  Mur_ligase_C  40 dkrlilvfgpggelgertrtfhdefgrlasalad 73 
                   +  +i++ g+    g+ t t   ++g++a+a+ +
    CTQ26424.1 104 QAPIIAITGSN---GKSTVT--TLVGEMAKAAGV 132
                   67899999984...447777..889999887554 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 1.3e-11
                   TTSSEEEEETTTEEEEEE.T--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHH CS
  Mur_ligase_C   2 kgRlevvgeadgvtvidD.yahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrl 67 
                    +R+++v  ++gv++i+D +a+n++s++aal++l ++  d+ l l++g g+    ++++f ++  +l
    CTQ26424.1 301 AHRFQLVLDHNGVRWINDsKATNVGSTEAALNGL-QL--DGTLYLLLG-GDG---KSADFTPLKRYL 360
                   59********************************.44..799*****9.777...888887765555 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.4e-05      0.14       3      69 ..       2      73 ..       1      91 [. 0.83
   2 ?   -3.9   0.1         3   1.8e+04      75      91 ..     199     213 ..     195     216 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.4e-05
  NAD_binding_7  3 ldlkgkkvlvvGgGevAarkvrklleagakvtvvapev....keeleelvklaeeel.ekdlegadlviaat 69
                    d +gkkv+++G G  +++ v  +++ g +  v++ +v     ++l+e v+++   l + +l  adl++a +
     CTQ26424.1  2 ADYQGKKVVIIGLGMTGLSCVDFFMARGVTPRVMDTRVahpgLDKLPEAVECHVGGLnDTWLLAADLIVASP 73
                   5789*******************************9987555445557788888888558999999999875 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3
  NAD_binding_7  75 neriaeaakarrilvnv 91 
                    + ri+e+ak    +vn+
     CTQ26424.1 199 KLRIYENAK--TCVVNA 213
                    557888887..556655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3566.65
//
Query:       CTQ26425.1  [L=424]
Description: integral membrane protein involved in stabilizing FstZ ring during cell division [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.5e-129  429.6  23.6   1.1e-128  429.3  23.6    1.0  1  FTSW_RODA_SPOVE  Cell cycle protein


Domain annotation for each model (and alignments):
>> FTSW_RODA_SPOVE  Cell cycle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.3  23.6  5.9e-133  1.1e-128       2     358 ..      57     412 ..      56     413 .. 0.98

  Alignments for each domain:
  == domain 1  score: 429.3 bits;  conditional E-value: 5.9e-133
  FTSW_RODA_SPOVE   2 allllvllllvilGlvmiysaslveslvlfgdsfvlfirqlvylllglivfvlllriplkfleklakllliislllLvlvkvplgssanGAkrW 95 
                       ll+l++ l++ +G++m++sas+   ++l +d+f +++r+ +y++l++++++++lr+p+ f+++ + ++li+s+++L++v v +gss+nGA rW
       CTQ26425.1  57 MLLWLTFGLAA-IGFIMVTSASMPVGQRLANDPFLFAKRDGLYIVLAFALAMITLRLPMDFWQRHSTAMLIASIVMLLIVLV-VGSSVNGASRW 148
                      57788888888.**********************************************************************.*********** PP

  FTSW_RODA_SPOVE  96 irlggisiqPsEfvkialilflAavlskkkkevksrlrellillvivllilvlillqpdlgtavllliillvvlflsglslklilaivlalilv 189
                      i lg ++iqP+Ef+k++l++++A++l++k +ev+++lr++l+++++++++++l+l+qpdlgt+v+l++++l++lfl+g++l++++ai++  +++
       CTQ26425.1 149 IALGPLRIQPAEFTKLSLFCYIANYLVRKADEVRNNLRGFLKPMGVIFVLAILLLAQPDLGTVVVLFVTTLAMLFLAGAKLWQFIAIIG--MGI 240
                      *****************************************************************************************..*** PP

  FTSW_RODA_SPOVE 190 iaivllilledyqvkrvtslldpfkdplgsgYqviqsliAigsGGllGkGlgnsqqkleyLPeahtDfIfavigEelGlvGvllllllfflliv 283
                      +a+vllil+e+y+++rvts+++p++dp gsgYq++qsl+A+g+G+++G+Glgns+qkleyLPeahtDfIfa+igEelG++Gv+l+ll++f++++
       CTQ26425.1 241 SAVVLLILAEPYRIRRVTSFWNPWEDPFGSGYQLTQSLMAFGRGEMWGQGLGNSVQKLEYLPEAHTDFIFAIIGEELGYIGVVLALLMVFFVAF 334
                      ********************************************************************************************** PP

  FTSW_RODA_SPOVE 284 rglriark...akdrfgsllavgivllivvqsfinigmvlGllPvtGltlPflSyGGsSllalliligillnisreek 358
                      r++ i rk   +++rf+ +la++i++++++q+++n+g+++G+lP++GltlP++SyGGsSll+++++i++ll+i++e++
       CTQ26425.1 335 RAMSIGRKaleIDHRFSGFLACAIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIMLLLRIDYETR 412
                      *****9998889*************************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1079  (0.0601818); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 2999.38
//
Query:       CTQ26426.1  [L=356]
Description: N-acetylglucosaminyl transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-48  164.2   0.1    3.1e-48  163.4   0.1    1.4  1  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom
    1.3e-36  126.1   0.0    1.8e-36  125.6   0.0    1.1  1  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
    5.8e-09   36.2   0.1    3.7e-08   33.6   0.0    2.0  2  Glyco_transf_4   Glycosyltransferase Family 4
    2.1e-06   28.2   0.4    2.1e-05   25.0   0.1    2.4  2  Glyco_trans_1_4  Glycosyl transferases group 1
    7.3e-06   26.5   2.7    7.5e-05   23.2   2.2    2.4  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
  ------ inclusion threshold ------
      0.085   12.3   0.2          1    8.8   0.1    2.1  2  adh_short        short chain dehydrogenase
       0.11   12.6   0.0       0.21   11.7   0.0    1.4  1  OTCace           Aspartate/ornithine carbamoyltransferase, As
       0.13   12.0   0.6        6.8    6.4   0.0    3.1  3  FMN_red          NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.1   1.4e-51   3.1e-48       2     138 ..       9     145 ..       8     146 .. 0.99

  Alignments for each domain:
  == domain 1  score: 163.4 bits;  conditional E-value: 1.4e-51
                      EEEE-SSHHHHHHHHHHHHHHHCTT-EEEEEEETCCCHHHHHHCCT-EEEE---GHCTT..CHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC CS
  Glyco_transf_28   2 vllggGTgGhvfPalAlakeLkkegheVrylgtkrgleerlveeaglefepiageklrrklspknlkeilkvlkavvkakkilkeakpdavvgt 95 
                      ++++gGTgGhvfP lA+a++L+++g++Vr+lgt +++e  lv++ g+e+  i +++lr+k+++  l ++ ++++a+++a++i+k+++pd+v+g+
       CTQ26426.1   9 MVMAGGTGGHVFPGLAVAHHLMDQGWQVRWLGTADRMEADLVPKNGIEIDFIRISGLRGKGIKAQLLAPVRIFNAWRQARAIMKRFQPDVVLGM 102
                      799******************************************************************************************* PP

                      CCCCCHCCCCCHCCCTTHCCCCCHCTS-ECCCCCCCCC-SCCC CS
  Glyco_transf_28  96 ggyvslpaviaaplaripviihEqnaipglanktlsrtatkva 138
                      ggyvs+p ++aa++++ipv++hEqn+i+gl+nk+l+++a+kv+
       CTQ26426.1 103 GGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIAKKVM 145
                      *****************************************97 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.0   8.2e-40   1.8e-36       2     165 ..     185     343 ..     184     345 .. 0.90

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 8.2e-40
                      EEEEE-SSSHHHHHCCCTSHHHHHHHHHHHHCHHHCCT-EEC---STT-TTTT.CEEEEEESSSSHHHHHHHH-EEEECS-CHHHHHHHHTT-- CS
  Glyco_tran_28_C   2 ilVtGGSqgaeaLnelvlselkllelksrelqvlhqtGkreleevkikveelt.lkvevfefidkmaeaikaadLvIsRAGagtiaEllalgkp 94 
                      +lV+GGSqga+ Ln+++++++++l  +   + + hq+Gk+ ++ v++ ++  + ++++v+efid+ma+a+++ad+v++R+Ga t+ E++a+g+p
       CTQ26426.1 185 VLVVGGSQGARVLNQTMPQVAAKLGAT---VTIWHQSGKGGQQTVQQAYAAAGqPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLP 275
                      89************************9...******************888888**************************************** PP

                      EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS---S---SSCH..CHHHHHHH CS
  Glyco_tran_28_C  95 lIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklrlaekskasaaskfadlae 165
                      +++vp+++  + +q+ Na  lekagaa +leq e+t e ++++l     e l    +++ +  ++ +d+ e
       CTQ26426.1 276 ALFVPFQH-KDRQQYWNALPLEKAGAAKILEQPEFTVEAVASTLASWDRETLL--DMAERARGASIPDATE 343
                      ********.56******************************999998888763..3333334566666666 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.6e-11   3.7e-08      10     131 ..      24     152 ..      15     176 .. 0.73
   2 ?    0.0   0.0      0.33   7.5e+02     127     143 ..     247     263 ..     200     277 .. 0.59

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.6e-11
  Glyco_transf_4  10 eLaraLarrGheVtvvtpgddgpleeev........elvvrvprvpl.pllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrl 95 
                      +a++L ++G++V+ +  +d+ +++  +        +++  ++++ +   l  + r++ ++r++r+++kr++pDvv   + +  g ++la++  l
      CTQ26426.1  24 AVAHHLMDQGWQVRWLGTADRMEADLVPkngieidfIRISGLRGKGIkAQLLAPVRIFNAWRQARAIMKRFQPDVVLGMGGYVSGPGGLAAWS-L 117
                     6799************878777777777667775552222222222212233344677778899****************************9.* PP

  Glyco_transf_4  96 giplVltvHglyekrllkarlkplsrllralerrl...l 131
                     gip+Vl+  +  +    +  +k+l ++++++++ +   +
      CTQ26426.1 118 GIPVVLHEQNGIA----GLTNKWLAKIAKKVMQAFpgaF 152
                     *****99888883....5555555555566665554444 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.33
  Glyco_transf_4 127 errllrradrviavSea 143
                     ++ ++ +ad v++ S a
      CTQ26426.1 247 MAAAYAWADVVVCRSGA 263
                     44558889999987765 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.29   6.5e+02      88     115 ..     112     137 ..     111     161 .. 0.78
   2 !   25.0   0.1   9.4e-09   2.1e-05      10     100 ..     191     279 ..     182     319 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.29
                      HHHHHTT-EEEE-TGGGTTT--TTSSEE CS
  Glyco_trans_1_4  88 lEamaaglpvVatdvggiaevvgengll 115
                      l a ++g+pvV  +  gia    +n +l
       CTQ26426.1 112 LAAWSLGIPVVLHEQNGIAG--LTNKWL 137
                      568999*****999888766..344455 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 9.4e-09
                      --GG.GTHHHHHHHHHHHH.H.HEEEEEE...S---..HHHHHHHT..T-T.TEEEE---THHHHHHHH-SEEEE-----SHHHHHHHHTT-EE CS
  Glyco_trans_1_4  10 leenvkgvdllleavpllrkk.dvrlviv...Gdgprpeeleelaa..gleerveftGfvedlaellaaadvfvaPsegfglkllEamaaglpv 97 
                           +g+++l + +p++++k  ++++i    G+g  ++ +++  a  g +++ ++t f++d+a+++a adv+v+ s    l++ E +aaglp 
       CTQ26426.1 191 S----QGARVLNQTMPQVAAKlGATVTIWhqsGKG-GQQTVQQAYAaaG-QPQHKVTEFIDDMAAAYAWADVVVCRSG--ALTVSEIAAAGLPA 276
                      4....7999999*******9953554444111555.4457775444445.69***********************994..79***********8 PP

                      EE- CS
  Glyco_trans_1_4  98 Vat 100
                         
       CTQ26426.1 277 LFV 279
                      765 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   2.2   3.3e-08   7.5e-05       9     119 ..      24     141 ..      16     284 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.3e-08
  Glyco_trans_4_4   9 elaraLaarGheVtvltpapapgapeleedgvrvh..rlpvprrp....spladla...alralrrllrqrrerpdvvhahsptaglaarlarr 93 
                      ++a++L ++G++V+ l +a++ +a+ +  +g+++   r+   r+     ++la ++   a r++r++   +r++pdvv   + + ++++ la++
       CTQ26426.1  24 AVAHHLMDQGWQVRWLGTADRMEADLVPKNGIEIDfiRISGLRGKgikaQLLAPVRifnAWRQARAIM--KRFQPDVVLGMGGYVSGPGGLAAW 115
                      67999*********998877777775556666655226544444324433444444332667777777..************655555556666 PP

  Glyco_trans_4_4  94 rrgiplvvtlhglllrrgsgavrrly 119
                        gip+v++ ++      + +++ ++
       CTQ26426.1 116 SLGIPVVLHEQNGIAGLTNKWLAKIA 141
                      *********98643333345555444 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.11   2.4e+02      13      32 ..      22      41 ..       8      59 .. 0.77
   2 ?    8.8   0.1   0.00046         1       3     102 ..     185     291 ..     184     294 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
                HHHHHHHHHHTT-EEEEEES CS
   adh_short 13 GraiakelakeGakvvvvdr 32
                G+a+a++l+ +G++v  ++ 
  CTQ26426.1 22 GLAVAHHLMDQGWQVRWLGT 41
                99************987554 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00046
                 EEEESTTSH...HHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEE.EE---S.S--SSGGG CS
   adh_short   3 vlvtGassG...IGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvL.vnNAGi.tgsgpfse 95 
                 vlv+G+s+G   + + + +  ak Ga+v++  +s +  ++++++  ++ g+  + ++  + d++++ a  + +v + g l v  ++ AG+ + ++pf++
  CTQ26426.1 185 VLVVGGSQGarvLNQTMPQVAAKLGATVTIWHQSGKGGQQTVQQAYAAaGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSeIAAAGLpALFVPFQH 283
                 899***999888899999**************************9999788888888888899999999888888889888877888888666677777 PP

                 CSHHH.HH CS
   adh_short  96 lseee.we 102
                  + ++ w+
  CTQ26426.1 284 KDRQQyWN 291
                 77666665 PP

>> OTCace  Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.3e-05      0.21       4      78 ..     184     260 ..     182     269 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.3e-05
                 EEEEESS.TTSHHHHHHH.HHHHHCT-EEEEES-TTSSH-HHHHHHHHHHHHHHT-EEEEE.SSCHHHHTT-SEEEE- CS
      OTCace   4 kiafvGd.kknnvansli.kllarlgmdvvlvaPkglepdkevleeakknakksggsitit.edleeavkgaDvvytd 78 
                 ++  vG+ +  +v+n  + +++a+lg++v++ +  g   + +++++a + a + ++++t   +d+++a + aDvv+ +
  CTQ26426.1 184 RVLVVGGsQGARVLNQTMpQVAAKLGATVTIWHQSGKGGQ-QTVQQAYAAAGQPQHKVTEFiDDMAAAYAWADVVVCR 260
                 5677887667899999998999***********9996664.456677777777776665544*************965 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.3     0.084   1.9e+02     112     136 ..      10      34 ..       4      47 .. 0.83
   2 ?   -1.0   0.0      0.58   1.3e+03      25      45 ..      48      69 ..      40      92 .. 0.72
   3 ?    6.4   0.0     0.003       6.8       2      75 ..     184     252 ..     183     258 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.084
                 EEEEEE-SSTTTTHHHHHHHHHHHH CS
     FMN_red 112 valvavgggrrgglraeeqlrqvla 136
                 v++ ++gg +  gl+++++l++   
  CTQ26426.1  10 VMAGGTGGHVFPGLAVAHHLMDQGW 34 
                 67778***************99766 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.58
                CCT-T.T-CEEEEETTTS..-- CS
     FMN_red 25 ealkeagaevelidladl.ilp 45
                + ++++g+e+++i++++l  ++
  CTQ26426.1 48 DLVPKNGIEIDFIRISGLrGKG 69
                4567779******988875554 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.003
                 EEEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEETTTS..--..---HCHGHTCGGSHHHHHHHHHHHH-SC CS
     FMN_red   2 kilvisGSlrkgsntrklaewaaealkeagaevelidladl.ilpcalcdkdlesegqtsddvaellekiaaada 75 
                 ++lv+ GS  ++  ++++ ++aa+     ga+v++ + +++  ++   + +    +gq++ +v e+++ +aaa a
  CTQ26426.1 184 RVLVVGGSQGARVLNQTMPQVAAKL----GATVTIWHQSGKgGQQ--TVQQAYAAAGQPQHKVTEFIDDMAAAYA 252
                 7889999987777777777777665....599****999984444..6666666668999999999999999966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2675.42
//
Query:       CTQ26427.1  [L=491]
Description: UDP-N-acetylmuramate:L-alanine ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-30  104.8   0.0    7.4e-30  104.4   0.0    1.2  1  Mur_ligase_M     Mur ligase middle domain
    7.9e-30  103.0   1.0    1.5e-29  102.2   0.3    1.8  2  Mur_ligase       Mur ligase family, catalytic domain
    8.9e-22   77.2   0.0    3.9e-21   75.1   0.0    2.2  3  Mur_ligase_C     Mur ligase family, glutamate ligase domain
  ------ inclusion threshold ------
      0.029   14.7   0.2      0.087   13.1   0.2    1.8  1  B_solenoid_dext  Beta solenoid repeat from Dextranase


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0   1.7e-33   7.4e-30       1     192 []     124     304 ..     124     304 .. 0.91

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 1.7e-33
                   EESSS-HHHHHHHHHHHHHCT.EEEEETTCSS-THHHHHHHHHHHHHTT-SEEEEE--HCHHHCTTTCCH.CBESEEEE---TSTTHH.HHSSHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaaileka.gkvigtvgttnneiglpktlaemekkeaeyavlEvsshglgekrlegl.lkpdvavitnispdHld.fhgtleny 94 
                   ++Gt+GKTTtt ++ +i+++a    +++ g + ++ g+++ l      + +y++ E+ ++       + l l+p va++tni+ dH+d +hg++en 
    CTQ26427.1 124 IAGTHGKTTTTAMVSSIYAEAgLDPTFVNGGLVKAAGVHARL-----GHSRYLIAEADES-----DASFLhLQPMVAIVTNIEADHMDtYHGDFENL 210
                   89****************999566****************99.....56788********.....5566568****************999****** PP

                   HHHHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEEEEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M  95 aeaKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlraknieeksegteiellevkggeleieipllGkhnvyNalaaiaa 191
                   ++++ +++ +l+  g av+ +ddp    +++ l + + ++ t+g++++a d+r +++++   + +++l++ ++  l+++++ +G+hn+ Na+aa+a+
    CTQ26427.1 211 KQTFINFLHNLPFYGRAVMCVDDP---VIRELLPRVGRQITTYGFSDDA-DVRVEDYRQVGAQGHFRLVRQDKAILQVTLNAPGRHNALNAAAAVAV 303
                   ************************...555555666656*********9.79*******99999*****9999999*******************99 PP

                   H CS
  Mur_ligase_M 192 a 192
                   a
    CTQ26427.1 304 A 304
                   6 PP

>> Mur_ligase  Mur ligase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.3   3.2e-33   1.5e-29       1      86 [.      21     118 ..      21     120 .. 0.98
   2 ?   -3.0   0.0       2.2   9.9e+03      37      51 ..     158     172 ..     151     201 .. 0.59

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 3.2e-33
                 EEEEESTTSCCHHHHHHHHHHTTSEEEEEESSHC.....HHHTT-EEEES-HGGGG......EE-T.S-TTCHHHHHHHHTTEEEEEHHHHHHHHHHC CS
  Mur_ligase   1 eihfigidgrgmsagalflalkGykvdGsdfies.....lialGaaavvghdaani......vvss.iskdnpeleaakepgipvesraeaLaelaar 86 
                 +ihf+gi+g+gm+++a++la++Gy+++Gsd++++     l +lGa++++ h+++n+      vvss is+dnpe++aa+e +ipv++rae+Lael++ 
  CTQ26427.1  21 HIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNpvtqqLSQLGATIYFNHRPENVrdasvvVVSSaISADNPEIVAAHEARIPVIRRAEMLAELMRF 118
                 8*************************************************************9999******************************96 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.2
                 HTT-EEEES-HGGGG CS
  Mur_ligase  37 alGaaavvghdaani 51 
                 a+G+ a +gh+   i
  CTQ26427.1 158 AAGVHARLGHSRYLI 172
                 678888888865533 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.8   1.3e+04      33      62 ..     111     135 ..     109     151 .. 0.64
   2 !   75.1   0.0   8.7e-25   3.9e-21       6      89 ..     338     418 ..     324     420 .. 0.87
   3 ?   -2.6   0.0       1.5   6.8e+03      30      50 ..     446     466 ..     441     482 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.8
                   HHHHHSSSSEEEEEEEESTT.CCSCHCTHH CS
  Mur_ligase_C  33 alreiapdkrlilvfgpggelgertrtfhd 62 
                   +l+e+   ++ i+++g   + g+ t t  +
    CTQ26427.1 111 MLAELMRFRHGIAIAGT--H-GKTTTT--A 135
                   56666667778888887..5.444444..4 PP

  == domain 2  score: 75.1 bits;  conditional E-value: 8.7e-25
                   EEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEESS-TTSTHHH CS
  Mur_ligase_C   6 evvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvlgdypraedsia 89 
                   ev g+ ++ ++idDy+h+p+++ a++ka+r  +pdk+l++vf+p  ++++rtr+++d+f+ ++ + +d l++l++yp++e +i 
    CTQ26427.1 338 EVNGKPGSAMLIDDYGHHPTEVDATIKAARAGWPDKNLVMVFQP--HRYTRTRDLYDDFANVLTQ-VDALLMLDVYPAGEAPIP 418
                   3334488899**********************************..*******************.9999999*******9886 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.5
                   HHHHHHHHSSSSEEEEEEEES CS
  Mur_ligase_C  30 alkalreiapdkrlilvfgpg 50 
                   a ++l+ + + + l+lv g+g
    CTQ26427.1 446 AAEMLASVLTGNDLVLVQGAG 466
                   345666666778888887763 PP

>> B_solenoid_dext  Beta solenoid repeat from Dextranase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   1.9e-05     0.087       8      26 ..     250     268 ..     248     269 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.9e-05
  B_solenoid_dext   8 yGdsdnisvevaDYKQVGa 26 
                      yG sd++ v+v+DY QVGa
       CTQ26427.1 250 YGFSDDADVRVEDYRQVGA 268
                      677899************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3473.05
//
Query:       CTQ26428.1  [L=306]
Description: D-alanine:D-alanine ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-66  223.6   0.0    2.2e-66  223.3   0.0    1.1  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    2.1e-19   69.9   0.2    9.4e-18   64.6   0.2    2.3  1  Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
    1.2e-06   28.2   0.0    0.00096   18.7   0.0    2.1  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    3.9e-05   23.3   0.0     0.0005   19.7   0.0    2.2  1  ATP-grasp_4      ATP-grasp domain
     0.0048   16.5   0.0     0.0064   16.1   0.0    1.3  1  ATP-grasp        ATP-grasp domain
     0.0098   15.2   0.0      0.017   14.4   0.0    1.3  1  ATPgrasp_YheCD   YheC/D like ATP-grasp
  ------ inclusion threshold ------
      0.028   13.7   0.0      0.079   12.2   0.0    1.6  2  ATPgrasp_ST      Sugar-transfer associated ATP-grasp
      0.029   13.5   0.0      0.041   13.0   0.0    1.2  1  TTL              Tubulin-tyrosine ligase family


Domain annotation for each model (and alignments):
>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.3   0.0   9.7e-70   2.2e-66       1     203 [.     103     302 ..     103     303 .. 0.99

  Alignments for each domain:
  == domain 1  score: 223.3 bits;  conditional E-value: 9.7e-70
                      HHHHTT--B--EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--ESEEEEEEEEETS CS
  Dala_Dala_lig_C   1 llkaaGlpvvpyvvlekeeakeekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeaiegreievavlgne 94 
                      l++ aGlpv+p+v+l+++++    +  +e+ +++lg+pv++Kp+reGSSvG+skv+   +l++a++ af++d +vlvE++++g e+++a++g  
       CTQ26428.1 103 LWQGAGLPVAPWVALTRAQFAAGLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLASALALAFQHDDEVLVEKWLSGPEFTIAIVG-- 194
                      89**********************99******************************************************************.. PP

                      SCEEEEEEEEE-SSSSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS---STTSHHHHHH CS
  Dala_Dala_lig_C  95 klevsevgeivvkkgfydyeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlPGfTeiSlfpkla 188
                        e+++ ++i+++++fydyeaky  d++q+++p   ++++e++iq+l+lka+++l+++G++R+D++l+++g+++l E Nt PG+T++Sl+p++a
       CTQ26428.1 195 -EEILPSIRIQAAGTFYDYEAKYLSDETQYFCPGFEDPARESAIQNLVLKAWNVLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAA 287
                      .99********************99********************************************************************* PP

                      HCTT--HHHHHHHHH CS
  Dala_Dala_lig_C 189 kasGlefkkLvdqli 203
                      +++G++f++Lv +++
       CTQ26428.1 288 RQAGMSFSQLVVRIL 302
                      ************998 PP

>> Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.2   4.2e-21   9.4e-18       1     103 []       4      86 ..       4      86 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 4.2e-21
                      EEEEEEE-SSTTHHHHHHHHHHHHHHCHCCTEEEEEEEE-TTS-EHHHHHHHHTTHHHTCCCCHCCCTCE--SEEEEE-TTTTTTSSHHHHHHH CS
  Dala_Dala_lig_N   1 kiavlfGGkStEhevSlvsaksvlkaldkekyeviligitkegkwkkkaekleskekkklkkeeekekkaeldvvfpvlhGkngEDGtlqglle 94 
                      kiavlfGG+S+E+evSl s+++vl  l++  +++ +++         +++               + kk+ ++ +f++lhG+ gEDGtlqglle
       CTQ26428.1   4 KIAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRD----V-DIT---------------QLKKQGFKKAFIALHGRGGEDGTLQGLLE 77 
                      79*************************88889999999877....2.222...............2346778999******************* PP

                      HTT--BSS- CS
  Dala_Dala_lig_N  95 llgipyvGs 103
                      l+++py+Gs
       CTQ26428.1  78 LIQLPYTGS 86 
                      ********7 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.3e-07   0.00096      32      92 ..     132     186 ..      96     209 .. 0.84
   2 !    7.8   0.0   0.00092       2.1     139     179 ..     235     274 ..     220     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.3e-07
                  HHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSS CS
  CPSase_L_D2  32 aiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgp 92 
                  +  + +g Pviik++  +   Gm  ++++ +la +++ a+++       ++vlvek+l+gp
   CTQ26428.1 132 QQIAALGLPVIIKPSREGSSVGMSKVSESCDLASALALAFQHD------DEVLVEKWLSGP 186
                  334569******************9999999999999999998......9********998 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00092
                  HHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS CS
  CPSase_L_D2 139 qalreaavkvvrevgvvgagtveflldpkskeyyviEvNtR 179
                  +a+++  +k+ + +g +g g ++ +ld+ ++++y++E Nt 
   CTQ26428.1 235 SAIQNLVLKAWNVLGCKGWGRIDVMLDS-DGQFYLLEANTS 274
                  5788888999999**************8.**********95 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.2e-07    0.0005       2      71 ..     138     193 ..     137     278 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.2e-07
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavday 71 
                   lPv+iKPs + +S+G++k++++ ++ +a+a   +              +++++lvE+++ G Ef + + 
   CTQ26428.1 138 GLPVIIKPSREGSSVGMSKVSESCDLASALALAFQ--------------HDDEVLVEKWLSGPEFTIAIV 193
                  58*************************98764332..............256789999999999998654 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.8e-06    0.0064       4      73 ..     107     184 ..     104     271 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.8e-06
                 TT--B-EEEEECCHH.......HHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC..GTTCEEEEE--- CS
   ATP-grasp   4 lglpvprflaveske.......eleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal..keekvivEefvp 73 
                 +glpv++++a+++++       ++e+ +++lglpv++K +r g++  G s v ++ dl +al+ +  ++ +v+vE++ +
  CTQ26428.1 107 AGLPVAPWVALTRAQfaaglstDVEQQIAALGLPVIIKPSREGSS-VGMSKVSESCDLASALALAfqHDDEVLVEKWLS 184
                 68888888888887766666678999999*********9999987.799***********9999988999******975 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.4e-06     0.017     209     234 ..     256     281 ..     254     297 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.4e-06
  ATPgrasp_YheCD 209 lDlgidkegkvWllEvNskpgrsifk 234
                     +D+++d++g+++llE+N+ pg ++ +
      CTQ26428.1 256 IDVMLDSDGQFYLLEANTSPGMTSHS 281
                     8********************97765 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.68   1.5e+03      21      81 ..      96     159 ..      92     184 .. 0.65
   2 ?   12.2   0.0   3.5e-05     0.079     229     270 ..     238     279 ..     231     293 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.68
  ATPgrasp_ST  21 dKlkfkelalraglkvpkllgvikeq...aeiseleafvkeleegvviKpakgsgGkGilvite 81 
                  dKl  k l + agl+v   ++  + q     ++++e+ ++ l   v+iKp +  +  G+++++e
   CTQ26428.1  96 DKLRSKWLWQGAGLPVAPWVALTRAQfaaGLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVSE 159
                  6666666777777777776666666666555566666666663337888777666666666554 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.5e-05
  ATPgrasp_ST 229 lelaakaaeklpglgylGwDivldeekgplllElNarpglai 270
                   +l+ ka++ l + g   +D+ ld +++ +llE+N+ pg++ 
   CTQ26428.1 238 QNLVLKAWNVLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTS 279
                  5678888884444445558********************986 PP

>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.9e-05     0.041     241     267 ..     255     281 ..     250     298 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
                 XXXXXXXXXXXXXXXXXXXXX..XXXX CS
         TTL 241 GvDilidenlkpwLlEvNasPdlkstt 267
                 ++D+++d++ + +LlE N+sP ++s++
  CTQ26428.1 255 RIDVMLDSDGQFYLLEANTSPGMTSHS 281
                 68*********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2198.90
//
Query:       CTQ26429.1  [L=276]
Description: membrane anchored protein involved in growth of wall at septum [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-27   97.1   0.2    1.7e-27   96.5   0.2    1.3  1  FtsQ      Cell division protein FtsQ
    2.4e-21   75.8   0.1    4.4e-21   74.9   0.1    1.5  1  POTRA_1   POTRA domain, FtsQ-type


Domain annotation for each model (and alignments):
>> FtsQ  Cell division protein FtsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.2   1.9e-31   1.7e-27       1     117 []     130     247 ..     130     247 .. 0.87

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 1.9e-31
                 EEEEETE.EEEEETT--B-C......CCBSS-EEE......S-HHHHHCCS-HHHHH...S-SEE-SS-TTEEEE-T.TS-EEEEES....TTHHHHHH CS
        FtsQ   1 AlwqeggedalidaeGevfea.deeaedeklPlltGpegsekevlevlaelpeelkp..leiseialserrrwqlvlddgvevklgreelaedleekla 96 
                 A+w   ++++++daeG+ f++  ++ ++++lP+l+Gpegse+evl+ ++++ + l++  ++++ +a+++rr+wql+l+++++++lgr+++++    +l+
  CTQ26429.1 130 ARW---NDQHMVDAEGNAFSVpADRTSKQNLPMLYGPEGSENEVLQGYRDMGQVLAKdkFTLKVAAMTARRSWQLTLNNDIKLNLGRGDTMK----RLQ 221
                 89*...888**********99533333226*****************************99999999********************98888....*** PP

                 T-CCHHHC................CCCT CS
        FtsQ  97 rlvkilpql....rlgre...ieyiDLR 117
                 r+++++p l    +   +   i+y+DLR
  CTQ26429.1 222 RFMELYPVLqqqaQT--DgkrISYVDLR 247
                 *********654322..2356******9 PP

>> POTRA_1  POTRA domain, FtsQ-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.1   4.9e-25   4.4e-21       2      69 .]      57     126 ..      56     126 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 4.9e-25
                 XX-EEEEES.-SS--HHHHHHHHHTTS.TT-GGGS-HHHHHHHHHH-TTEEEEEEEEETTTEEEEEEEC- CS
     POTRA_1   2 pikqvevsG.nkhlsseeiikalgiek.gtslfsldleaieqrleklpwvksasVrrqwPntleitveEr 69 
                 p+++ +v+G ++++ +++i++a+   + +++++++d++ i++++e+lpw+k+asVr+qwP+ l+i+++E+
  CTQ26429.1  57 PLSKMVVTGeRHYTRNDDIRQAILALGsPGTFMTQDVNIIQSQIERLPWIKQASVRKQWPDELKIHLVEY 126
                 899******************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2107.26
//
Query:       CTQ26430.1  [L=420]
Description: ATP-binding cell division protein involved in recruitment of FtsK to Z ring [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-34  116.9   1.3    1.1e-24   86.8   0.0    2.1  2  FtsA            Cell division protein FtsA
      4e-30  104.0   2.2    8.5e-30  103.0   2.2    1.6  1  SHS2_FTSA       SHS2 domain inserted in FTSA
    1.3e-10   40.8   0.5    3.1e-07   29.7   0.1    2.7  2  PilM_2          Type IV pilus assembly protein PilM;
      2e-10   40.0   0.5      2e-10   40.0   0.5    1.9  3  MreB_Mbl        MreB/Mbl protein
    0.00063   18.8   0.9     0.0021   17.1   0.8    1.8  2  DDR             Diol dehydratase reactivase ATPase-like domai
     0.0011   18.0   0.3     0.0029   16.5   0.1    1.8  2  EutA            Ethanolamine utilisation protein EutA
  ------ inclusion threshold ------
      0.025   13.2   0.7        4.2    5.9   0.0    2.4  3  Actin           Actin
      0.044   12.0   0.7       0.14   10.4   0.2    1.9  2  HSP70           Hsp70 protein
      0.047   12.9   0.4       0.15   11.2   0.1    2.0  2  Hydantoinase_A  Hydantoinase/oxoprolinase
      0.062   12.5   0.1       0.63    9.2   0.0    2.2  2  StbA            StbA protein
       0.16   11.0   0.0       0.22   10.6   0.0    1.1  1  ANF_receptor    Receptor family ligand binding region
       0.17    9.7   0.1       0.97    7.2   0.1    1.8  2  SrfB            Virulence factor SrfB


Domain annotation for each model (and alignments):
>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.2   6.1e-10   9.2e-07       1      86 [.      11     180 ..      11     200 .. 0.81
   2 !   86.8   0.0   7.5e-28   1.1e-24       1     103 []     207     381 ..     207     381 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 6.1e-10
                 EEEEE-SSSEEEEEEETTEEEEEEEES-...-HHHHHHH.......HHHHHT--HHHHHHHH.HHH--S--...................EEEEEHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxx.......xxxxxxxxxxxxxxxx.xxxxxxxx...................xxxxxxxxx RF
        FtsA   1 alvDiGagktdvavaedgalvhlrvigv...ggngitkd.......iakalrtaveeAerik.ikyGsala...................ekeigrkel 69 
                 ++++iG+ k+ ++v+e      +++igv   +++g++k+       ++k+++ a+++Ae ++ +++ s++                    e+e++++++
  CTQ26430.1  11 VGLEIGTAKVAALVGEVLPDGMINIIGVgscPSRGMDKGgvndlesVVKCVQRAIDQAELMAdCQISSVYLalsgkhiscqneigmvpisEEEVTQDDV 109
                 689**************54444******99999*****************************3333333337787777786666655555444444444 PP

                 H.....................................................GGGGSTTHHHHHHHH.H CS
                 x.....................................................xxxxxxxxxxxxxxx.x RF
        FtsA  70 s.....................................................ggsalpnleelaera.l 86 
                 +                                                        + +n+++++er+ l
  CTQ26430.1 110 EnvvhtaksvrvrdehrvlhvipqeyaidyqegiknpvglsgvrmqakvhlitcHNDMAKNIVKAVERCgL 180
                 49999999999999999999999999999999999999999999999999999999999999999999962 PP

  == domain 2  score: 86.8 bits;  conditional E-value: 7.5e-28
                 EEEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHHHHHHHT--HHHHHHHHHHH--S--..................EEEEEHHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxx........... RF
        FtsA   1 alvDiGagktdvavaedgalvhlrvigvggngitkdiakalrtaveeAerikikyGsala..................ekeigrkels........... 70 
                 ++vDiG+g++d+av+ +gal+h++vi+++gn +t+dia+a++t+ ++Ae ik+++G+al                   +++++r++l+           
  CTQ26430.1 207 CVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGsivgkdenvevpsvggrpPRSLQRQTLAevieprytell 305
                 79**********************************************************999999999999999888777777777688889999999 PP

                 ...............................GGGGSTTHHHHHHHHHT-.............HH.HT-GGGHHHHH CS
                 ...............................xxxxxxxxxxxxxxxxxxx...........xxx.xxxxxxxxxxx RF
        FtsA  71 ...............................ggsalpnleelaeralspk...........lee.vsdpeyasalg 103
                                                g++++++l+ +a+r++ ++           l++ +++p y++a+g
  CTQ26430.1 306 nlvneeilqlqeqlrqqgvkhhlaagivltgGAAQIEGLAACAQRVFHTQvrigaplnitgLTDyAQEPYYSTAVG 381
                 99999999999999999999**************************9444555556688887777*********98 PP

>> SHS2_FTSA  SHS2 domain inserted in FTSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   2.2   5.7e-33   8.5e-30       1      79 []      85     162 ..      85     162 .. 0.99

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 5.7e-33
                 .....EEEEEEEEE-TTS-E--HHHHHHHHHHH....CHTTEEEEEEEEEEEEETTTEEESB-TT-EESEEEEEEEEEE CS
   SHS2_FTSA   1 GkhiksvnskgvvaisgedeiteedvervleaakavaipedreilhvipqeyivDgqegikdPvGmsGvrLevevhvit 79 
                 Gkhi+++n+ g+v+is+e e+t++dve+v+++ak+v++++++++lhvipqey++D qegik+PvG+sGvr++++vh+it
  CTQ26430.1  85 GKHISCQNEIGMVPISEE-EVTQDDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLIT 162
                 89****************.***********************************************************8 PP

>> PilM_2  Type IV pilus assembly protein PilM;
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.1   2.1e-10   3.1e-07     107     237 ..     133     261 ..      12     265 .. 0.75
   2 !    8.6   0.0   0.00055      0.82     246     310 ..     295     364 ..     285     382 .. 0.70

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.1e-10
      PilM_2 107 devslDFevlgpsa.ekpd...kvevllaAarkekvedrvalleaaglkakvvDvesyAleraleliasqlpdkgkekvvaivdigasrttlsvlrdgk 201
                 +e  +D++   +++   ++   + +v l  +++++ ++ v+++e  glk+   D   +A  +a    +s l ++++e  v++vdig  ++ ++v++ g 
  CTQ26430.1 133 QEYAIDYQEGIKNPvGLSGvrmQAKVHLITCHNDMAKNIVKAVERCGLKV---DQLIFAGLAA---SYSVLTEDERELGVCVVDIGGGTMDIAVYTGGA 225
                 66667776533332122221114589999********************9...8889998887...7889999999*********************** PP

      PilM_2 202 ivYtreqafGgeqltqeivrrYglsleeaekkkrsg 237
                   +t+   + g+ +t +i+  +g    +ae+ k+++
  CTQ26430.1 226 LRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRH 261
                 ********************************9876 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00055
      PilM_2 246 evlepflealaqeisralqffltssqqnkvdk.....ilLaGGtaslpgleelleeelgisttvanpfae 310
                 ev+ep  ++l++ ++  +       +q+ v++     i+L+GG a+++gl+   +   ++++ +  p++ 
  CTQ26430.1 295 EVIEPRYTELLNLVNEEILQLQEQLRQQGVKHhlaagIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNI 364
                 66666666666666665544444444444443333349**************999999999999888765 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.2   1.7e+03      64      95 ..      47      78 ..      43     122 .. 0.65
   2 ?   -2.8   0.1       1.4   2.1e+03     234     271 ..     101     138 ..      87     144 .. 0.70
   3 !   40.0   0.5   1.4e-13     2e-10     114     304 ..     173     359 ..     155     370 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
                ETTEESSHHHHHHHHHHHHHHHHTSS-SS--E CS
    MreB_Mbl 64 kdGviadlevaeellkyfikkvkkkkslskpr 95
                 +G + dle + + +++ i++++    ++ ++
  CTQ26430.1 47 DKGGVNDLESVVKCVQRAIDQAELMADCQISS 78
                55555555555555555555555444433333 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
                 EEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHH CS
    MreB_Mbl 234 evevsseevrealkepvsaiveavkevLektppeLaad 271
                 e ev++++v+++++++ s  v   ++vL+ +p e a d
  CTQ26430.1 101 EEEVTQDDVENVVHTAKSVRVRDEHRVLHVIPQEYAID 138
                 45677777777777777776777777777777776666 PP

  == domain 3  score: 40.0 bits;  conditional E-value: 1.4e-13
                 HHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS CS
    MreB_Mbl 114 eaakkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevavislggivtsksvrvaGdeldeaiikyirkkynlliGertaekikieigsav 212
                 +a++++G +  +li   laA      + e+  g  vvdiGggt ++av + g +  +k +  aG+ + ++i       y    + + ae+ik++ g+a 
  CTQ26430.1 173 KAVERCGLKVDQLIFAGLAASYSVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIA------YAFGTPPSDAEAIKVRHGCAL 265
                 55556666666666666666666666667788999***********************************95......89999**********999988 PP

                 --HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHH....HHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE- CS
    MreB_Mbl 213 keeeeekmeikGrdlvtglpkevevsseevrealkepvsaiveavk....evLektppeLaadivdrgivltGGgallkgldkllseetglpvkva 304
                  +   +  +++   +    p++  ++ ++++e+++   +++++ v+    +  e+   + ++  +  givltGG+a+++gl  + ++ ++ +v+++
  CTQ26430.1 266 GSIVGKDENVEVPSVGGRPPRS--LQRQTLAEVIEPRYTELLNLVNeeilQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIG 359
                 7766665555544443334443..5566666666666555555555000055555666666677789*****************999999999886 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.5   7.4e+02     226     268 ..      91     133 ..      71     144 .. 0.74
   2 !   17.1   0.8   1.4e-06    0.0021     105     189 ..     176     259 ..     102     274 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.5
         DDR 226 lkedelvplee.dlslekirsvRreaKekvfvtnalRalkkvsp 268
                  +e ++vp++e +++ + + +v ++aK+ v v++  R l+ +  
  CTQ26430.1  91 QNEIGMVPISEeEVTQDDVENVVHTAKS-VRVRDEHRVLHVIPQ 133
                 4557899996515677889999988884.788888888876654 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.4e-06
         DDR 105 eelgvkvevggvEaemAilGalttPGtekplailDlGaGstDaalieeegevkavhlAGAGemvtlliaseLgledrelaEdiKk 189
                 e+ g+kv        +A    lt    e  + ++D+G+G++D a+ +     ++  +  AG++vt  ia  +g  + + aE iK 
  CTQ26430.1 176 ERCGLKVDQLIFAGLAASYSVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAFGT-PPSDAEAIKV 259
                 33455555555556678888899999999*************999887666666667889*************9.8889999995 PP

>> EutA  Ethanolamine utilisation protein EutA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.4   2.1e+03      37      70 ..      82     114 ..      68     117 .. 0.76
   2 !   16.5   0.1     2e-06    0.0029     127     181 ..     187     242 ..     161     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.4
        EutA  37 eivekevlyrseiiftPlleeeeidaekikeiie 70 
                 ++  k++  + ei + P++e ee+ ++ ++++++
  CTQ26430.1  82 ALSGKHISCQNEIGMVPISE-EEVTQDDVENVVH 114
                 45689999999999999865.5677888888875 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2e-06
        EutA 127 iagkGagaaalsk.ekstrvlniDiGGGtsnlalfkeGevidtacldvGGrlikid 181
                  ag  a+ + l + e++  v  +DiGGGt  +a+++ G + +t  +   G+++  d
  CTQ26430.1 187 FAGLAASYSVLTEdERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSD 242
                 46666666666551567789************************999999988766 PP

>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.3   3.4e+03      63      86 ..      44      67 ..      43      77 .. 0.78
   2 ?    5.4   0.1     0.004       5.9     144     189 ..     206     249 ..     186     264 .. 0.83
   3 ?    5.9   0.0    0.0028       4.2     318     341 ..     322     345 ..     283     381 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.3
       Actin 63 spvedGvvedwdaveelwehvlke 86
                + +++G v+d ++v +  ++++ +
  CTQ26430.1 44 RGMDKGGVNDLESVVKCVQRAIDQ 67
                568899999999999988888766 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.004
       Actin 144 glvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellss 189
                  +vvD+G + t+ ++V+ G +L++ ++  + +G+ +t+ ++  + +
  CTQ26430.1 206 VCVVDIGGG-TMDIAVYTGGALRH-TKVIPYAGNVVTSDIAYAFGT 249
                 58*****98.66679*******75.7899********999877765 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0028
       Actin 318 vdlrpeLlanivvtGGnsllpglt 341
                   ++++L+a iv+tGG++ ++gl 
  CTQ26430.1 322 QGVKHHLAAGIVLTGGAAQIEGLA 345
                 567889****************97 PP

>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   9.1e-05      0.14     150     202 ..     169     220 ..     161     225 .. 0.78
   2 ?   -1.6   0.0      0.37   5.5e+02     304     350 ..     306     352 ..     286     357 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.1e-05
                 HHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS.SCEEEEEEEEXSSXEEEEE CS
       HSP70 150 qatkdAgkiAGLnvlRivNepTAaalaYGldkkd.kernvlvyDlGggtfdvSi 202
                 +++  A +  GL+v  ++    Aa+  Y +  +d +e  v v+D+Gggt+d+ +
  CTQ26430.1 169 KNIVKAVERCGLKVDQLIFAGLAAS--YSVLTEDeRELGVCVVDIGGGTMDIAV 220
                 4667788899999999998887776..554444427889*************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.37
                 HHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHT CS
       HSP70 304 dllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelf 350
                 +l+++ +  +++ l++ ++k +    +vl GG++ i  +    + +f
  CTQ26430.1 306 NLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVF 352
                 46777777889999999999999999******999876666655555 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1    0.0001      0.15      54     105 ..     182     230 ..     153     284 .. 0.82
   2 ?   -1.1   0.0      0.61   9.1e+02     217     255 ..     304     341 ..     294     353 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
  Hydantoinase_A  54 pvetilSGPaaGvvgaaatsklagekkvItfDmGGTstDvslikdgevevsl 105
                     + ++i +G aa+  ++ +    ++e  v ++D+GG ++D++++  g  +++ 
      CTQ26430.1 182 VDQLIFAGLAASYSVLTE---DERELGVCVVDIGGGTMDIAVYTGGALRHTK 230
                     557899999999999888...5555567899*************77765544 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.61
  Hydantoinase_A 217 ilsvavenmanavrklsvergldpkeltlvvfGGaGaqh 255
                     +l++++e++ +  ++l +++g++ + ++ +v +G++aq+
      CTQ26430.1 304 LLNLVNEEILQLQEQL-RQQGVKHHLAAGIVLTGGAAQI 341
                     5666666666655555.7778777777766666666665 PP

>> StbA  StbA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00042      0.63     149     193 ..     190     234 ..     169     274 .. 0.81
   2 ?    0.7   0.0      0.16   2.5e+02     242     284 ..     299     341 ..     280     355 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00042
        StbA 149 lPagfealkeldeleslLiiDlGGttLDvakvrgklegiskvkgd 193
                 l a++++l e ++   + ++D+GG t+D+a  +g     +kv  +
  CTQ26430.1 190 LAASYSVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPY 234
                 566777777666666678************999877666776654 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.16
        StbA 242 dkresvlevinekvkkLkerviravsefsgythvmvvGGGael 284
                  ++ ++l+ +ne+  +L+e+++++  + +  + ++++GG a++
  CTQ26430.1 299 PRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQI 341
                 4677889999999999999999998888888889999998876 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00015      0.22     169     228 ..     147     202 ..     104     246 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
                   H.HHHHTTT--EEEEEE-HHHHHHHHHHHHHTTS-STTEEEEETCHCCCECTTS-CC..HH CS
  ANF_receptor 169 l.lkeikskarvivlfcssedarellkaarrlgltgeeyvwiasdawtsslvldkpeltgl 228
                   + l+ ++++a+v ++ c++++a++++ka++r gl  ++  +    ++++s+++++++  ++
    CTQ26430.1 147 VgLSGVRMQAKVHLITCHNDMAKNIVKAVERCGLKVDQLIFA---GLAASYSVLTED--ER 202
                   25667899****************************988888...677777777665..33 PP

>> SrfB  Virulence factor SrfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1   0.00065      0.97     555     577 ..     199     221 ..     186     234 .. 0.84
   2 ?    0.1   0.0      0.09   1.3e+02     612     714 ..     307     412 ..     303     420 .] 0.70

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00065
        SrfB 555 kkekslrvasiDiGgGTTDLvit 577
                 ++e++l v  +DiGgGT D+++ 
  CTQ26430.1 199 EDERELGVCVVDIGGGTMDIAVY 221
                 4458999************9985 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.09
        SrfB 612 viqevvlpaleealkkaGlaeaesllsklfgkdgqsvqeavlrqq.l..tlqvlvPlalalLeayekldpl.eeskeieakfaellaaeeaptakvley 706
                 +++e +l +l+e l+++G+++  +    l g+ +q +  a + q+ +  ++++ +Pl ++ L++y +     +     ++  ++ l+ e++++++v++ 
  CTQ26430.1 307 LVNEEIL-QLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRvFhtQVRIGAPLNITGLTDYAQEPYYsTAVGLLHYGKESHLSGEAEVEKRVTAS 404
                 5555554.799*********88888888888886666555544431422567789*****9*9999876652444455666677888888888888888 PP

        SrfB 707 veeevrre 714
                 v + ++r 
  CTQ26430.1 405 VGSWIKRL 412
                 88777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 2884.12
//
Query:       CTQ26431.1  [L=383]
Description: GTP-binding tubulin-like cell division protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-42  144.1   0.6    8.7e-42  143.6   0.6    1.3  1  Tubulin         Tubulin/FtsZ family, GTPase domain
    8.8e-38  128.5   1.2    2.6e-37  127.0   1.2    1.8  1  FtsZ_C          FtsZ family, C-terminal domain
      0.005   16.7   0.2      0.016   15.1   0.2    1.9  1  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
      0.086   13.4   0.2       0.25   11.9   0.0    1.8  2  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
       0.16   11.1   8.2        2.8    7.1   2.8    2.5  2  Tubulin_2       Tubulin like


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.6   0.6   2.4e-45   8.7e-42       2     196 ..      13     172 ..      12     173 .. 0.98

  Alignments for each domain:
  == domain 1  score: 143.6 bits;  conditional E-value: 2.4e-45
                 EEEEEEHHHHHHHHHHHHH...HHHCH....HHHT.....TTEEEEE....EEESBHHHHHTS-GS......EEEE--CCCCTTC--TT-HHHHHHHHH CS
     Tubulin   2 iivigvGqcGnqignelwellakehgiqsdgdslesfFsesgkveyiprsvaidtdpqvlneikagselfnpnklllgkegagnngaggypevgkeaae 100
                 i+vigvG++G+++++++++    e  i             +g ve++    a++td+q+l+++  g      +++++g+  ++++gag++pevg+ aa+
  CTQ26431.1  13 IKVIGVGGGGGNAVEHMVR----E-RI-------------EG-VEFF----AVNTDAQALRKTAVG------QTIQIGSGITKGLGAGANPEVGRNAAD 82 
                 89*****************....7.99.............88.9***....***************......*************************** PP

                 HTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--GG.G-HHHHHHHHHHHHHHHHT-SEEEEEEHHHHHCCS CS
     Tubulin 101 eileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPsefsevvvepynailalkelieesdavividNdaLlkil 196
                 e +e +r +++++d+   +fi a++gGGTG+G++pv++ev+k+   ++l+v+vv+ P++f e++ ++  a++++ el++++d++i+i+Nd+Llk+l
  CTQ26431.1  83 EDREALRAALDGADM---VFIAAGMGGGTGTGAAPVVAEVAKDL--GILTVAVVTKPFNF-EGKKRMAFAEQGITELSKHVDSLITIPNDKLLKVL 172
                 ***************...**************************..**************.*******************************9985 PP

>> FtsZ_C  FtsZ family, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.0   1.2   7.2e-41   2.6e-37       1      94 [.     221     315 ..     221     316 .. 0.99

  Alignments for each domain:
  == domain 1  score: 127.0 bits;  conditional E-value: 7.2e-41
                 EEEEEEEEEEESTTHHHHHHHHHHTSGGGT.--GGG-SEEEEEEEE-TT--HHHHHHHHHHHHHHS-TTSEEEEEEEE-TT--SEEEEEEEEES- CS
      FtsZ_C   1 GvAmmgvGeasgedraeeaaeaaisspLLd.vdlsgAkgvlvnitggsdltlkEveevaetireevdeeanvivGavideeledeirvtvvatgl 94 
                 G Ammg G asgedraeeaae aisspLL+ +dlsgA+gvlvnit+g dl l+E+e+v++tir +++++a+v++G+++d++++de+rvtvvatg+
  CTQ26431.1 221 GYAMMGSGVASGEDRAEEAAEMAISSPLLEdIDLSGARGVLVNITAGFDLRLDEFETVGNTIRAFASDNATVVIGTSLDPDMNDELRVTVVATGI 315
                 89********************************************************************************************8 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   4.5e-06     0.016      49      97 ..      83     132 ..      68     151 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.5e-06
                     T-CCHHHHHHTT-SEEEES---TCCHHHH.HHHHHHHHHHCT--EEEEEE CS
  NAD_binding_10  49 tdvedlaealkgadaVvsalggggkdeeg.aknivdaakeagvkRfvlvs 97 
                     +d e+l++al+gad V++a+g gg++ +g a  ++++ak  g+  + +v+
      CTQ26431.1  83 EDREALRAALDGADMVFIAAGMGGGTGTGaAPVVAEVAKDLGILTVAVVT 132
                     6889****************888886666356666788888887777776 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.8   9.9e+03      71      88 ..     105     123 ..     100     142 .. 0.64
   2 ?   11.9   0.0   6.9e-05      0.25      12      75 ..     276     343 ..     274     349 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.8
                 STSSSHHHHHHHH.HHHHT CS
   HATPase_c  71 gggtGlGlsivkk.lvelm 88 
                 gggtG G++ v + +++ +
  CTQ26431.1 105 GGGTGTGAAPVVAeVAKDL 123
                 6888886654433365544 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 6.9e-05
                 HHHHHHHHHHSTTTEEEEEEEE..EE...TEEEEEEEESSSSSTTHHHTGTCS.TTCHHCSTCHTSTSSS CS
   HATPase_c  12 nlvdNavkfatkageieveika..se...ddlvisveDnGiGipkedlkklfe.kfsqddstkrggggtG 75 
                 + v+N +++   +++ +v i +  +    d+l+++v  +GiG++k     l + k +q +  +++++++G
  CTQ26431.1 276 ETVGNTIRA-FASDNATVVIGTslDPdmnDELRVTVVATGIGMDKRPEITLVTnKQVQ-QPVMDRYQQHG 343
                 679999998.77888888888644114678**************97666555556666.44445555665 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.6    0.0011         4       2      54 ..      15      56 ..      15      68 .. 0.76
   2 ?    7.1   2.8   0.00077       2.8     116     174 ..      69     114 ..      56     123 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0011
   Tubulin_2  2 viGLGGtGgkvlaelrrrlreelgslelpdkvqFlyiDtdeneknrlkdatde 54
                viG+GG Gg++++   +++re++      + v+F ++ td ++++++  a ++
  CTQ26431.1 15 VIGVGGGGGNAVE---HMVRERI------EGVEFFAVNTDAQALRKT--AVGQ 56
                79******98765...6677788......789**********99765..4444 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00077
   Tubulin_2 116 GAGqiRtvGRlalfanleeirealrdaikrlrgsageeeglnvfVvgSLaGGTGSGifl 174
                 GAG ++ vGR a    ++e realr a++ +           vf++ ++ GGTG G + 
  CTQ26431.1  69 GAGANPEVGRNA----ADEDREALRAALDGADM---------VFIAAGMGGGTGTGAAP 114
                 888888888855....67777778877777766.........*************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3001.36
//
Query:       CTQ26432.1  [L=305]
Description: UDP-3-O-acyl N-acetylglucosamine deacetylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-108  362.7   0.0   1.4e-108  362.5   0.0    1.0  1  LpxC      UDP-3-O-acyl N-acetylglycosamine deacetylase


Domain annotation for each model (and alignments):
>> LpxC  UDP-3-O-acyl N-acetylglycosamine deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.5   0.0  7.6e-113  1.4e-108       1     269 [.       4     276 ..       4     277 .. 0.98

  Alignments for each domain:
  == domain 1  score: 362.5 bits;  conditional E-value: 7.6e-113
                 EEEESS-EEEEEE-TTT-SEEEEEEEE--TT-EEEEEETTSS.ETEEESSGGGEEEESSSEEEE.ETTEEEB--HHHHHHHHHTT--SEEEEESSSB-- CS
        LpxC   1 qrTlkksvslsGvGLhsGekvevtlkPaeantGivfrrtdlp.ekeipasienvsdtklsttlg.kkgvkvstvEHllaAlaalgidnalievdgeEvP 97 
                 qrTlk+ v+++GvGLh+G+kv++tl+Pa+antG+++rrtdl+   ++pa++++v+dt l+t+l  +++v++stvEHl aAla+lgidn+++evd++E+P
  CTQ26432.1   4 QRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNpPVDFPADAKSVRDTMLCTCLVnEHDVRISTVEHLNAALAGLGIDNIIVEVDAPEIP 102
                 99***************************************976678*****************988******************************** PP

                 -TTSSSHHHHHHHHHHTEEEEEEE--EEEE-S-EEEEETTEEEEEEE-SSEEEEEEEEESSTTCCC..CEEEEETTCCHHHHHTTT--EEEEHHHHHHH CS
        LpxC  98 ilDGSaaefveaieeagikeqeaerkvlrvkkpveveegdkfvallPsdelklsveidfehpaige..qslslelseesfakeiapARTFgflkeveal 194
                 i+DGSaa+fv+++ +agi e + ++k++r+k++v+ve+gdk+++++P+++++l+++idf+hpai+   q+++l++s ++f+++i++ARTFgf++++e+l
  CTQ26432.1 103 IMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDAstQRYTLNFSADAFMRQISRARTFGFMRDIEYL 201
                 ****************************************************************9888******************************* PP

                 HHTTSSTT-STTTSEEEESSSBSSTT--SSTTHHHHHHHHHHHHHHGGGSSEEEEEEEEES--HHHHHHHHHHHH CS
        LpxC 195 rkaglakGgsldnavvideekvlneeglrfedEfvrHKiLDliGDLallgapllghvvaykagHalnnkllrall 269
                 +++gl +Ggs+d+a+v+d+++vlne+glrfedEfvrHK+LD+iGDL ++g++++g+++ayk+gHalnnkll+a+l
  CTQ26432.1 202 QSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVL 276
                 ************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2483.69
//
Query:       CTQ26433.1  [L=167]
Description: regulator of secA translation [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-52  177.4   2.4    2.1e-52  177.1   2.4    1.0  1  SecM      Secretion monitor precursor protein (SecM)
    0.00027   21.8   0.2      0.027   15.4   0.0    2.4  2  DUF2547   Protein of unknown function (DUF2547)


Domain annotation for each model (and alignments):
>> SecM  Secretion monitor precursor protein (SecM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.1   2.4   2.3e-56   2.1e-52       1     145 [.      26     164 ..      26     165 .. 0.92

  Alignments for each domain:
  == domain 1  score: 177.1 bits;  conditional E-value: 2.3e-56
                 XXXXXXXXXX.XXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX CS
        SecM   1 mVAaslGlpavlaeaaeklsapntsssqsrqnqalvsfdsLallqesqrrpsfsvdYWqQhAirtvIrhLSfalapqelkaeaeessplqaqklalLdt 99 
                 mVAaslGlpa l++ +e ++ap+++++++++   +v+f++Lall+ ++rrpsf+vdYW+QhAirtvIrhLSfa+apq+l+ + ee+splqaq+lalLdt
  CTQ26433.1  26 MVAASLGLPA-LSNGHE-TAAPAKATASNHNP-SKVNFSQLALLE-TNRRPSFTVDYWHQHAIRTVIRHLSFAMAPQALPVA-EETSPLQAQHLALLDT 119
                 9*********.999988.88888888777666.79*******776.999*****************************8666.999************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX----SS-----------X CS
        SecM 100 LsalLtqeakpeailrqaeraavvssssystalwlaqvqGIRAGPa 145
                 LsalLtq+++p++++rqa ++  +s s +++++w++qv GIRAGP+
  CTQ26433.1 120 LSALLTQDSTPPVVIRQAGYIP-SSYSAFRVSAWISQVAGIRAGPQ 164
                 ****************988888.56777*****************8 PP

>> DUF2547  Protein of unknown function (DUF2547)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     3e-06     0.027       1      50 [.      15      64 ..      15      95 .. 0.68
   2 !    4.5   0.1    0.0076        68      63      97 .]     130     164 ..      89     164 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3e-06
     DUF2547  1 ktnFwsqLllgivAi.faLPeaqelaneeavenyqntqsvqqqvletaall 50
                +++Fw  Lllg+vA  + LP  ++ +++   + + ++++ + + +++++l+
  CTQ26433.1 15 RRYFWPHLLLGMVAAsLGLPALSNGHETA-APAKATASNHNPSKVNFSQLA 64
                589**********75499**999875554.444444444555555544443 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0076
     DUF2547  63 aklvvveskkqavvepeflaksyrlelaPIRagPl 97 
                   +v++++        +f ++++  ++a IRagP+
  CTQ26433.1 130 PPVVIRQAGYIPSSYSAFRVSAWISQVAGIRAGPQ 164
                 4455555555556666777777777779*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1279.38
//
Query:       CTQ26434.1  [L=901]
Description: preprotein translocase subunit, ATPase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.3e-132  439.5   0.4   9.4e-132  438.7   0.4    1.4  1  SecA_DEAD     SecA DEAD-like domain
    1.4e-69  234.1   6.9    1.4e-69  234.1   6.9    1.9  2  SecA_SW       SecA Wing and Scaffold domain
    4.8e-40  136.7   0.2    1.2e-39  135.4   0.2    1.7  1  SecA_PP_bind  SecA preprotein cross-linking domain
      7e-11   41.8   9.7    1.2e-10   41.1   9.7    1.4  1  SEC-C         SEC-C motif
    0.00029   20.7   0.1     0.0026   17.6   0.0    2.3  2  DEAD          DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.097   13.0   1.9       0.28   11.5   0.2    2.6  2  DUF2175       Uncharacterized protein conserved in archaea (D
       0.11   12.0   2.2       0.12   11.8   0.1    2.0  2  DUF2764       Protein of unknown function (DUF2764)
       0.45   11.2   2.4        2.2    9.0   2.4    2.3  1  FOXP-CC       FOXP coiled-coil domain
       0.52   10.7   2.4          3    8.2   0.0    2.7  2  Helicase_C    Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.7   0.4  4.7e-135  9.4e-132       2     290 .]       7     402 ..       6     402 .. 0.98

  Alignments for each domain:
  == domain 1  score: 438.7 bits;  conditional E-value: 4.7e-135
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD   2 kkllgsknerelkklkkiveeineleeelkalsdeeLrakteelkerlaegealdellpeafalvreaakrvlgmrhydvQliGglvlhegkiaemkTG 100
                 +k++gs+n+r+l++++k+v+ in +e+++++lsd+eL+akt+e+++rl++ge+l++l+peafa+vrea+krv+gmrh+dvQl+Gg+vl++  iaem+TG
  CTQ26434.1   7 TKVFGSRNDRTLRRMRKVVNIINGMEPAMEKLSDDELKAKTAEFRARLEKGETLESLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNDRCIAEMRTG 105
                 799************************************************************************************************ PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD 101 EGKtlvatlpaylnaltgkgvhvvtvndYLakrdaewmgpvyeflGlsvgvieseleseerreaYeaditYgtnnelgfdyLrDnlalskeelvqrgln 199
                 EGKtl+atlpaylnaltgkgvhvvtvndYLa+rdae+ +p++eflG++vg+  s l + ++reaY+aditYgtnne+gfdyLrDn+a+s+ee+vqr+l+
  CTQ26434.1 106 EGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGMTVGINMSGLPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLH 204
                 *************************************************************************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................... RF
   SecA_DEAD 200 faivDEvDsvLiDeArtpLiisgpaeeeselyeeakklvkeleeeed.................................................... 246
                 +a+vDEvDs+LiDeArtpLiisgpae++se+y++++k++ +l ++e+                                                    
  CTQ26434.1 205 YALVDEVDSILIDEARTPLIISGPAEDSSEMYRKVNKIIPHLIRQEKedsdtftgeghfsvdekarqvnlterglvlieellvqegimdegeslysptn 303
                 ***************************************6555544445668999999999************************************** PP

                 .......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD 247 .......................................................akegveieeesqtlatitlqnffrlYeklaGmtGTaeteaeefk 290
                                                                        akegvei++e+qtla+it+qn+frlYeklaGmtGTa+tea ef+
  CTQ26434.1 304 imlmhhvtaalrahalftrdvdyivkdgeviivdehtgrtmqgrrwsdglhqaveAKEGVEIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFS 402
                 *************************************************************************************************95 PP

>> SecA_SW  SecA Wing and Scaffold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.3   8.5e+03     143     166 ..     348     371 ..     315     395 .. 0.70
   2 !  234.1   6.9   7.2e-73   1.4e-69       1     199 []     617     830 ..     617     830 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.3
                 HHHHHHHHHHHHHHHCCCTTSSSS CS
     SecA_SW 143 aWkehLdamdeLregiglrgygqk 166
                 +W + L++  e +eg+++++ +q 
  CTQ26434.1 348 RWSDGLHQAVEAKEGVEIQNENQT 371
                 566666666666666666665554 PP

  == domain 2  score: 234.1 bits;  conditional E-value: 7.2e-73
                 -B-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHCHHHHHHHHHHHHHHHHHCHHHHS.SS.C.SHHHHHHHHHCCCS CS
     SecA_SW   1 piesklvsksienaQkkvEernfdiRknlleYDdVmnkQRkviYkqRrevLegesedlrerildliedvveeiveesvpeeeke.ewdleglleelkee 98 
                 +ie+++v+k+i+naQ+kvE+rnfdiRk+lleYDdV n+QR++iY+qR+e+L+   +d++e+i+++ edv+++++++++p+++ e  wd+egl+e+lk+ 
  CTQ26434.1 617 AIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYTQRNELLDV--SDVSETINSIREDVFKATIDAHIPPQSLEeMWDIEGLQERLKND 713
                 69*************************************************55..59**********************987755************** PP

                 SSTSST..............HHHHHHHHHHHHHHHHHHHHC..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTSSSS-CCHHHHHHHHHHHH CS
     SecA_SW  99 fsvele..............elaeellekaekayekkeeei..ellrelervvlLevlDkaWkehLdamdeLregiglrgygqkdPlqeYkkegfelFe 181
                 f ++l+              +l+e++l++a ++y++kee +  e++r++e+ v+L++lD+ WkehL amd+Lr+gi+lrgy+qkdP+qeYk+e+f++F 
  CTQ26434.1 714 FDLDLPikewldkepelheeTLRERILQSAVETYQRKEEVVgaEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKDPKQEYKRESFSMFA 812
                 ***********************************9999889999****************************************************** PP

                 HHHHHHHHHHHHHCCCT. CS
     SecA_SW 182 emlarikeevvkkllkve 199
                 +ml+++k ev+++l kv+
  CTQ26434.1 813 AMLESLKYEVISTLSKVQ 830
                 **************9985 PP

>> SecA_PP_bind  SecA preprotein cross-linking domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.4   0.2   5.8e-43   1.2e-39       2     111 .]     232     358 ..     231     358 .. 0.94

  Alignments for each domain:
  == domain 1  score: 135.4 bits;  conditional E-value: 5.8e-43
                   HHHHHHHHHHHHCCCHTTC...........CECCCTTTSEEEESHHHHHHHHHCCT-......SSSTTSCCHCCHHHHHHHHHHHHHCSTTTTTEEE CS
  SecA_PP_bind   2 seelyekanklvkklkeee...........dyevdekkktveltekGvekvekllkv......keelydeenlelvhhvnqaLkAhtlferdvdYiv 81 
                   s+e+y+k+nk++++l ++e           +++vdek+++v+lte+G+  +e+ll         e+ly+++n+ l+hhv++aL+Ah+lf+rdvdYiv
    CTQ26434.1 232 SSEMYRKVNKIIPHLIRQEkedsdtftgegHFSVDEKARQVNLTERGLVLIEELLVQegimdeGESLYSPTNIMLMHHVTAALRAHALFTRDVDYIV 328
                   689***********7776669999999999************************84466677789******************************** PP

                   CTTCEEEBSTTTSSEBTS--SSTTHHHHHH CS
  SecA_PP_bind  82 kdgeviivDeftGRlmegrrysdGLhqaie 111
                   kdgeviivDe+tGR+m+grr+sdGLhqa+e
    CTQ26434.1 329 KDGEVIIVDEHTGRTMQGRRWSDGLHQAVE 358
                   *****************************8 PP

>> SEC-C  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   9.7     6e-14   1.2e-10       1      19 []     881     899 ..     881     899 .. 0.98

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 6e-14
       SEC-C   1 RNdpCPCGSGkKYKkCCgp 19 
                 RNdpCPCGSGkKYK+C+g+
  CTQ26434.1 881 RNDPCPCGSGKKYKQCHGR 899
                 9****************97 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.3e-06    0.0026      14     134 ..      95     215 ..      86     232 .. 0.80
   2 ?   -0.6   0.2      0.48   9.5e+02      81     155 ..     790     860 ..     709     868 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.3e-06
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEH.....HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtp.....gr 107
                 ++ ++++++TG GKTl + +p++ +       tg+ + +v+    La+  ++n + ++++++++v   ++g +a  ++++    +di++gt      + 
  CTQ26434.1  95 NDRCIAEMRTGEGKTLTATLPAYLN-----ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGMTVGINMSGLPAPAKREAY--AADITYGTNneygfDY 186
                 46789******************33.....577888888888999*****************9999889999998888888..89******95444433 PP

                 HHHHH......HCTSSHCTTEEEEEEETHHHHH CS
                 xxxxx......xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 108 lddll......stgklnlsqvrflVlDEadrll 134
                     l      s ++   +++ +  +DE+d +l
  CTQ26434.1 187 ----LrdnmafSPEERVQRKLHYALVDEVDSIL 215
                 ....34444674444457889999999999876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.48
                 EETTSSHHHHHHHHHTT.CSEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTT CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  81 iiggvaardqlskldng.vdivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcd 155
                  + g a++d +++ +++   ++ +  + l   + s    +ls+v++    E+  + +q ++++ +r l+q++q +++
  CTQ26434.1 790 HLRGYAQKDPKQEYKREsFSMFAAMLESLKYEViS----TLSKVQVRMPEEVEAMEQQ-RREEAER-LAQMQQLSHQ 860
                 34555555555555433366666666666663313....4999999999999999999.8888888.7777676665 PP

>> DUF2175  Uncharacterized protein conserved in archaea (DUF2175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.4   2.8e+03      46      87 ..      16      56 ..       4      61 .. 0.66
   2 ?   11.5   0.2   0.00014      0.28      26      90 ..     789     853 ..     783     859 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.4
     DUF2175 46 aaLleleevlneeivklkelervaedeevkkvleqkrkelEk 87
                  L+++ +v+n +     ++e++ +d+e+k  ++++r  lEk
  CTQ26434.1 16 RTLRRMRKVVNIINGMEPAMEKL-SDDELKAKTAEFRARLEK 56
                55666666555433334444454.559999999999999998 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00014
     DUF2175  26 vHyeClvekarkklkesedaaaLleleevlneeivklkelervaedeevkkvleqkrkelEkaaa 90 
                 +H+  +++k  k+ ++ e+  ++  + e l++e++   +  +v   eev  + +q+r e+E+ a 
  CTQ26434.1 789 IHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEAMEQQRREEAERLAQ 853
                 788888888888888889999***********************9****************9874 PP

>> DUF2764  Protein of unknown function (DUF2764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1     6e-05      0.12     157     231 ..     607     684 ..     586     690 .. 0.85
   2 ?   -1.6   0.2      0.73   1.5e+03      57     122 ..     720     785 ..     709     807 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6e-05
     DUF2764 157 arklgldvsnvi...vgenevaealrtsdardfeLgeeleyleellkiseetdlvkrekkldllrwewleeavfnkyf 231
                  rklg+ + + i     ++ +a+a r+ ++r+f++ ++l + +++ +++ +  +++r+  ld+       +++++++f
  CTQ26434.1 607 MRKLGMKPGEAIehpWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYTQRNELLDVSDVSETINSIREDVF 684
                 58888888888877656789999***************************************9988777777777776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.73
     DUF2764  57 lkllkdkekakdergrissdeleellaalkeedkikedelpsyl.kdFlleylaeeaeerishedrL 122
                 +k   dke++  ++ ++ +  l++++++++ ++++   e+  ++ k  +l+ l+   +e++ + d L
  CTQ26434.1 720 IKEWLDKEPEL-HEETLRERILQSAVETYQRKEEVVGAEMMRHFeKGVMLQTLDSLWKEHLAAMDYL 785
                 55555555555.6667888889999999888888855555555515678888888888888877776 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.4    0.0011       2.2      35      66 ..     824     856 ..     799     868 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
     FOXP-CC  35 kstaqlrvqm.qvvqqlekqlvkEkerLqaMma 66 
                  ++ +++v+m + v+++e+q ++E erL  M++
  CTQ26434.1 824 STLSKVQVRMpEEVEAMEQQRREEAERLAQMQQ 856
                 5666777777789******************96 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0015         3       2      82 ..     434     513 ..     433     515 .. 0.78
   2 ?    1.0   0.6      0.27   5.4e+02      90     111 .]     558     579 ..     552     579 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0015
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidi 82 
                 k++a++e + ++++ g+ +l+ + +i++ e v+  l+k gik  vl+++  ++e + + ++     s v iat++a+rG di
  CTQ26434.1 434 KIQAIIEDIkTRTAAGQPVLVGTISIEKSEVVSRELTKAGIKHNVLNAKFHASEADIVAQAGY--PSAVTIATNMAGRGTDI 513
                 777778777677788888999999999887633334678*********999998777766664..4669************8 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.27
                 ESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  90 nfdlprnvtsyiqriGRtgRag 111
                   +  ++ +  +q +GR+gR g
  CTQ26434.1 558 GTERHESRRIDNQLRGRAGRQG 579
                 555566778899********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (901 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1048  (0.0584528); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 6244.34
//
Query:       CTQ26435.1  [L=130]
Description: nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-19   70.2   0.0    1.8e-19   70.1   0.0    1.0  1  NUDIX     NUDIX domain
    5.6e-15   55.3   0.0    6.4e-15   55.1   0.0    1.0  1  NUDIX_4   NUDIX domain
  ------ inclusion threshold ------
       0.13   11.9   0.0       0.14   11.8   0.0    1.1  1  NUDIX_2   Nucleotide hydrolase


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0     3e-23   1.8e-19       4     127 ..       6     122 ..       2     126 .. 0.76

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 3e-23
                 EEEEEEEEETTSEEEEEEES.SSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE..EEECSGCSS CS
       NUDIX   4 ravgvvllnekgevLlvrrs.kkpfpg.WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl..eevegelep 98 
                  avg +++n++ge+++++r+ +++ ++  e+PgGk+e +Etpe+A++REl+EE+G+++ +  l+++l+y +p       +++i+++f+  e+++ge+  
  CTQ26435.1   6 IAVG-IIRNPQGEIFITQRAaDAHMANkLEFPGGKIESDETPEQALIRELQEEVGITVTTSSLFDKLEYQFP-------DRHITLWFFlvESWQGEPWG 96 
                 4455.56*************9888888789**************************9988888886655333.......45677777778999999776 PP

                 TSTTTEEEEEEEEHHHHHHHHTHCTHHHH CS
       NUDIX  99 ndenevsevrwvpleellkeklaaesrkl 127
                 +   e +  rw+    l ++++ ++++++
  CTQ26435.1  97 K---EGQPGRWMAGPTLDPAAFPPANEPV 122
                 6...5556677776666556666656555 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   1.1e-18   6.4e-15       1     109 [.       7     124 ..       7     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 1.1e-18
                 EEEEEEEC.TEEEEEE--TTSSSTT-EE-SEEE.-TTS-HHHHHH...HHHHS-EEE..EEEEEEEEEEETTEEEEEEEEEE.EEE.S..---...EEE CS
     NUDIX_4   1 avllirdd.grvllekRpekgllggLwefPgge.eegeeleeala...reelgieve..elepgtvkHvftHfrltltvylv.rveegeeapa...elr 88 
                 av +ir++ g++++++R ++ ++++  efPgg+ e++e++e+al+   +ee+gi+v+  +l   + +++f ++++tl ++lv +++ ge   +    +r
  CTQ26435.1   7 AVGIIRNPqGEIFITQRAADAHMANKLEFPGGKiESDETPEQALIrelQEEVGITVTtsSL-FDKLEYQFPDRHITLWFFLVeSWQ-GEPWGKegqPGR 103
                 6899***99************************777777999998888999**97773333.12355***********99897554.44433356799* PP

                 EEEGGGGGGS---CCCHCCHH CS
     NUDIX_4  89 wvtpeeleeyalptavrklle 109
                 w+    l+ +a+p a++ +++
  CTQ26435.1 104 WMAGPTLDPAAFPPANEPVIS 124
                 ***999*********998875 PP

>> NUDIX_2  Nucleotide hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.3e-05      0.14      68      99 ..      31      62 ..      11      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.3e-05
     NUDIX_2 68 qefkLpggklksgedeiegLkrkLakklskek 99
                +++++pggk++s+e+++++L r L++ +  + 
  CTQ26435.1 31 NKLEFPGGKIESDETPEQALIRELQEEVGITV 62
                46899*********************998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1007.16
//
Query:       CTQ26436.1  [L=64]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-26   91.2   1.2      3e-26   90.9   1.2    1.1  1  YacG             DNA gyrase inhibitor YacG
  ------ inclusion threshold ------
      0.037   14.4   0.4      0.058   13.8   0.4    1.5  1  Lar_restr_allev  Restriction alleviation protein Lar


Domain annotation for each model (and alignments):
>> YacG  DNA gyrase inhibitor YacG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   1.2   3.4e-30     3e-26       1      51 [.       7      57 ..       7      58 .. 0.95

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 3.4e-30
        YacG  1 vkCPtCkkevewseenpfrPFCSeRCkliDLGeWaseeyripaeeaeedee 51
                v+CPtC+k+v+w e++pfrPFCS+RC+liDLGeWa+ee+rip++ + +d++
  CTQ26436.1  7 VNCPTCGKTVVWGEQSPFRPFCSKRCQLIDLGEWAAEEKRIPSAGDLSDSD 57
                89****************************************998888765 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4   6.4e-06     0.058       2      37 ..       5      37 ..       4      57 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.4e-06
  Lar_restr_allev  2 eLkpCPfCggravlersqrvvaeigqcvyCad.Cga..s 37
                     ++  CP Cg+  v++++   +       +C + C     
       CTQ26436.1  5 TIVNCPTCGKTVVWGEQSPFRP------FCSKrCQLidL 37
                     6779************977665......67666988332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 498.45
//
Query:       CTQ26437.1  [L=247]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-78  261.6   3.3    6.1e-78  261.4   3.3    1.0  1  ZapD      Cell division protein


Domain annotation for each model (and alignments):
>> ZapD  Cell division protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.4   3.3   3.4e-82   6.1e-78       1     210 []      19     225 ..      19     225 .. 1.00

  Alignments for each domain:
  == domain 1  score: 261.4 bits;  conditional E-value: 3.4e-82
                 HHHHHHHHHHHHHTT--STTHHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHCTTT-TTS-HHHHHHHHHHHHHHHHHHHH--.STTHHHHC-H CS
        ZapD   1 LRLEqlfeqleefleedseadhhaalralfelldvleRadlksellkeLerqkqkLkalrenpgvdeealeelleeleqalsaLeaaegklgqslkede 99 
                 LR+E+l++q+++  +  s+ad+ +++r+  +lldvleR++++++l+keLerq++kL++++e pgvd+e+++el+++l+q +s+L+aa+ ++gq l+ed+
  CTQ26437.1  19 LRIEFLIQQMAFRPQIASHADALHFFRNAGDLLDVLERGEVRTDLVKELERQQRKLQSWAEVPGVDQERINELRHQLKQSSSTLMAAP-RIGQFLREDR 116
                 9***************************************************************************************.********** PP

                 HHHHHHHHHCSS----GCC-HHHHHHHTS-HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHC---EEEEECCCEEEEE-SS..--EEEEEEEGGG-EEE CS
        ZapD 100 lLssirqRlsipGgtcefDlPayhlWleqpaeerqqdleewleelapleealaliLkllResgefskvvaenGfyqqsleekaaqLlrvrldeelavyP 198
                 l++++rqRlsipGg+c+fDlP++h+Wl+ p+++r++++ +wl++l+pl ++l+liL+l+R+s+ f+k+++ nGfyq++ e+  a+Llr+rld ++++yP
  CTQ26437.1 117 LIALVRQRLSIPGGCCSFDLPTLHIWLHMPQAHRDEQVASWLASLDPLVQSLSLILDLIRNSALFRKQTSLNGFYQDNGED--ADLLRLRLDLAHQLYP 213
                 *********************************************************************************..**************** PP

                 EEEEETTEEEEE CS
        ZapD 199 eiSgnkyrlaiR 210
                 +iSg+k+r+aiR
  CTQ26437.1 214 QISGHKSRFAIR 225
                 ***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1884.46
//
Query:       CTQ26438.1  [L=206]
Description: dephospho-CoA kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-71  239.7   0.2    1.9e-71  239.4   0.2    1.1  1  CoaE             Dephospho-CoA kinase
      4e-05   23.8   0.4      0.098   12.8   0.0    2.2  2  SKI              Shikimate kinase
    5.4e-05   23.4   0.6    0.00064   19.9   0.6    2.4  1  AAA_33           AAA domain
    0.00024   20.8   0.6    0.00044   19.9   0.6    1.4  1  AAA_29           P-loop containing region of AAA domain
     0.0006   20.4   1.4      0.014   15.9   1.3    2.4  1  AAA_18           AAA domain
    0.00062   20.0   3.1     0.0058   16.9   2.5    2.6  2  AAA_28           AAA domain
     0.0012   19.3   0.7     0.0094   16.4   0.7    2.2  1  AAA_17           AAA domain
     0.0028   17.8   2.4       0.12   12.5   2.4    2.8  1  Cytidylate_kin2  Cytidylate kinase-like family
  ------ inclusion threshold ------
      0.021   15.1   0.2       0.16   12.3   0.0    2.3  3  AAA_22           AAA domain
      0.028   14.6   0.3      0.045   13.9   0.3    1.4  1  Caudo_TAP        Caudovirales tail fibre assembly protein, la
      0.033   13.9   0.9       0.11   12.2   0.9    1.9  1  Cytidylate_kin   Cytidylate kinase
      0.059   13.1   1.1        2.2    8.0   0.1    2.2  2  PRK              Phosphoribulokinase / Uridine kinase family
      0.063   13.0   0.4       0.61    9.7   0.0    2.2  2  Thymidylate_kin  Thymidylate kinase
      0.063   13.8   1.0       0.13   12.7   1.0    1.9  1  ABC_tran         ABC transporter
      0.081   12.8   0.1       0.15   12.0   0.1    1.5  1  APS_kinase       Adenylylsulphate kinase
      0.096   12.3   2.2        1.6    8.3   0.1    2.2  2  CobU             Cobinamide kinase / cobinamide phosphate gua
       0.15   12.2   0.0         14    5.7   0.0    2.2  2  tRNA_lig_kinase  tRNA ligase kinase domain
       0.18   12.1   3.0       0.91    9.9   3.0    2.1  1  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.4   0.2     2e-74   1.9e-71       2     175 ..       4     177 ..       3     180 .. 0.98

  Alignments for each domain:
  == domain 1  score: 239.4 bits;  conditional E-value: 2e-74
                 EEEEEESTTSSHHHHHHHHHHTT-EEEEHHHHHHHTTCCTHHHHHHHHHHHGGGCB.TTSSE-HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH CS
        CoaE   2 ivgltGgiasGKstvanlfadlgvpivDaDlvArqvvepgsealkkiveeFgeeildedGeLdReaLrkkvFadpeekkaLnallhPlirreikkelak 100
                  v+ltGgi+sGKstva++fa+lgv+++DaD++Arqvvepg++al++iv +Fg+++++ dG+L+R+ Lr+k+Fa+ eek++LnallhPli++e+++++++
  CTQ26438.1   4 TVALTGGIGSGKSTVADAFAQLGVKVIDADVIARQVVEPGTPALQAIVGHFGPQMIAPDGTLNRRLLREKIFAHVEEKAWLNALLHPLIQQETRRQMQA 102
                 79************************************************************************************************* PP

                 --SSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHCCTSTHHHHHHHHHHS--HHHHHHH-SEEEE-.S CS
        CoaE 101 leskyvlldvPLLvEkqlekliervlvvdvelelqveRlvardgvseeevkaiiaaQlseeerlaladvvldNds 175
                 ++s+y l++vPLLvE++l+  ++rvlvvdv++e+q+eR++ rd+vs+e++++i+aaQ+++++rla+ad+v++N +
  CTQ26438.1 103 ATSPYLLWVVPLLVENRLSGQADRVLVVDVPKETQIERTMLRDKVSREHAEHILAAQATRQQRLAVADDVIENTG 177
                 *************************************************************************66 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   9.9e-05     0.098       2      30 ..      12      39 ..      11      47 .. 0.88
   2 !    9.2   0.2    0.0013       1.3      75     149 ..      93     168 ..      90     179 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.9e-05
                TSSHHHHHHHHHHHHTSEEEEHHHHHHHH CS
         SKI  2 GaGKstvGkllAkklglefiDlDeliekr 30
                G+GKstv+ ++A+ lg+++iD+D +  ++
  CTQ26438.1 12 GSGKSTVADAFAQ-LGVKVIDADVIARQV 39
                9**********96.9********877665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0013
                 SHHHHHHHHHHSEEEEEE--HHHHHHHHHHTTSSGGGCSCHHHHHHHHHHHHHHHHHCCSSCEEEECTSSHH..HHH CS
         SKI  75 seenrellkekgiviyLdvsleellerlkadkeRPllqekskeeelleelaereplyeeaadvvvdeseesk..eev 149
                 ++e+r+ +++     +L v +  + +rl+ + +R l+ +  ke++ ++++  r+++ +e+a ++ +++ +++   +v
  CTQ26438.1  93 QQETRRQMQAATSPYLLWVVPLLVENRLSGQADRVLVVDVPKETQIERTML-RDKVSREHAEHILAAQATRQqrLAV 168
                 56777778756666667777777889********99999999777777777.9999999999998887776522344 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.6   6.4e-07   0.00064       4     122 ..       7     148 ..       5     175 .. 0.49

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 6.4e-07
      AAA_33   4 lvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqskt..............................dytrvldrlyqilnelarkalsagrn 72 
                 l G  GsGKst+a+  + +lg+ +++ d++ r++++ + + ++                              +                    ++++ 
  CTQ26438.1   7 LTGGIGSGKSTVADAFA-QLGVKVIDADVIARQVVEPGTPALQaivghfgpqmiapdgtlnrrllrekifahvE--------------------EKAWL 84 
                 67889**********88.***********888888755555556666666655555444444444444332221....................22222 PP

      AAA_33  73 vildatnlsrrerarflklarrlgvp..............vrivvvetdeetlkeRlakRaang 122
                   l  +++++++r+++ ++ + +                 +r++vv+++ et  eR+  R + +
  CTQ26438.1  85 NALLHPLIQQETRRQMQAATSPYLLWvvpllvenrlsgqaDRVLVVDVPKETQIERTMLRDKVS 148
                 2222233333333222222221111122233333333333444444444444444444444433 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.6   4.4e-07   0.00044      24      45 ..       4      25 ..       1      27 [. 0.87

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.4e-07
      AAA_29 24 atlltGpsGsGKSTllDAiqal 45
                ++ ltG +GsGKST+ DA++ l
  CTQ26438.1  4 TVALTGGIGSGKSTVADAFAQL 25
                678***************9865 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.3   1.4e-05     0.014       1     118 [.       5     149 ..       5     161 .. 0.48

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.4e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.....................gvnlrdvakenglllevdpe.....aldeskrldedkldklldaleenss... 69 
                 ++ltG +G+GK+t+a++ ++++ ++                     +                        ++ +   l++  l + + a+ e  +   
  CTQ26438.1   5 VALTGGIGSGKSTVADAFAQLGvKVidadviarqvvepgtpalqaiV------------------GhfgpqMIAPDGTLNRRLLREKIFAHVEEKAwln 85 
                 689***************99954446664444444444333332220..................1333332222222222221111111111111222 PP

      AAA_18  70 ................aleegknlvidghlaeleseaakdikkvvLtaspeelleRlekRgyeea 118
                                 a +++  l +  +l+e++   + d++  v+++++e+ +eR   R++ ++
  CTQ26438.1  86 allhpliqqetrrqmqAATSPYLLWVVPLLVENRLSGQADRV-LVVDVPKETQIERTMLRDKVSR 149
                 222233344445554433333333444444555555555666.7777777777777777766655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   2.5   5.9e-06    0.0058       2      36 ..       5      41 ..       4     165 .. 0.89
   2 ?    0.4   0.2      0.66   6.6e+02      51      77 ..     147     173 ..     124     202 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.9e-06
      AAA_28  2 ivitGgestGKTtlleaLaargypvv.pEa.areile 36
                +++tGg ++GK+t++ a+a+ g++v+ +++ ar+++e
  CTQ26438.1  5 VALTGGIGSGKSTVADAFAQLGVKVIdADViARQVVE 41
                89***********************985541666665 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.66
      AAA_28  51 dllafaervleeqleeeaaaaankvlf 77 
                    + ae++l++q+ ++++ a  + ++
  CTQ26438.1 147 VSREHAEHILAAQATRQQRLAVADDVI 173
                 334445555555554444444444444 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.7   9.4e-06    0.0094       1     128 [.       8     150 ..       8     156 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 9.4e-06
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTT...SHSSHHHHCTSHHHHHHHHH.HHHHHHH....HHHHHSSEEEEEE-SEEEETTEEEES CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrgg...lakardemrklpleekkelq.keaaeki....aeeakkkgvlvdghprikeqagfldg 91 
                 +Gg GsGK+t++     ++g++++   d++   + + g   l+   +++    + ++  l  +++ eki    +e+a   ++l+  hp i  q++ + +
  CTQ26438.1   8 TGGIGSGKSTVA-DAFAQLGVKVID-ADVIARQVVEPGtpaLQAIVGHFGPQMIAPDGTLNrRLLREKIfahvEEKA-WLNALL--HPLI--QQETRRQ 99 
                 69**********.77789*******.577776666665343344445555444444443330333344411104433.233444..5554..3333444 PP

                 SHHHH.......H.....H..HH..SEEEEEE--HHHHHHHHHHHTTST-T CS
      AAA_17  92 lpkev.......l.....e..elkpdaiilleadpeeilerrlkdrtrgrd 128
                 +++ +       +     +  + + d ++++++++e+ +er + +++ +r+
  CTQ26438.1 100 MQAATspyllwvVpllveNrlSGQADRVLVVDVPKETQIERTMLRDKVSRE 150
                 444432222222233333422334688999******999999998765554 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   2.4   0.00012      0.12       2     145 ..       5     155 ..       4     167 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
  Cytidylate_kin2   2 ITIsreyGsgGetigeaLAekLglpfydreiieevakelglseeev..eevde..rsrlssflskllaarvagdtl.....deklddelfeaqe 86 
                      +++++  Gsg++t+++a A+ Lg++++d ++i++ + e g +  ++   ++     ++ + + ++ll++++++        ++ l   +++ ++
       CTQ26438.1   5 VALTGGIGSGKSTVADAFAQ-LGVKVIDADVIARQVVEPGTPALQAivGHFGPqmIAPDGTLNRRLLREKIFAHVEekawlNALLHPLIQQETR 97 
                      789999*************6.9**********99999888887666555544444222233333334443333333444443333333444444 PP

  Cytidylate_kin2  87 rvirelaaeesvVivGRgadliLkdrpnvlrvfltapledrvkrvaereglseeearek 145
                      r ++++ +    ++v    ++ L ++ + +   ++ p+e  ++r + r ++s+e a+  
       CTQ26438.1  98 RQMQAATSPYLLWVVPLLVENRLSGQADRV-LVVDVPKETQIERTMLRDKVSREHAEHI 155
                      444444343355666666666666644322.2356677777777777777766666655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00016      0.16       8      67 ..       5      81 ..       2     131 .. 0.71
   2 ?   -0.7   0.0       1.5   1.5e+03      40      51 ..     125     136 ..     113     166 .. 0.55
   3 ?   -0.7   0.0       1.6   1.6e+03      20      98 ..     142     170 ..     135     193 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee...........erpevv.........fvtlpsst.sskdllrellralgle 67
                +++tG  G+GK+t++  +++  +++++a+            +    +          + +p +t +++ l+++++  ++++
  CTQ26438.1  5 VALTGGIGSGKSTVADAFAQLGVKVIDADViarqvvepgtpA----LqaivghfgpQMIAPDGTlNRRLLREKIFAHVEEK 81
                689*****************9999988887888888766541....12234566777888888888888888888888753 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.5
      AAA_22  40 pevvfvtlpsst 51 
                 ++v+ v++p++t
  CTQ26438.1 125 DRVLVVDVPKET 136
                 444444444444 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.6
      AAA_22  20 tllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav..ielliiD 98 
                 +l  ++ +++ e++ a++                                                    a+  ++l + D
  CTQ26438.1 142 MLRDKVSREHAEHILAAQ----------------------------------------------------ATrqQRLAVAD 170
                 444445555544444444....................................................33333333333 PP

>> Caudo_TAP  Caudovirales tail fibre assembly protein, lambda gpK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   4.5e-05     0.045      55      99 ..     146     192 ..     115     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.5e-05
   Caudo_TAP  55 wvedkkeeqiqqAeqekqqllaqAseqiaplq..davdlgiatdeEk 99 
                 +v ++++e+i +A++++qq+la A++ i+     dav+ + a   Ek
  CTQ26438.1 146 KVSREHAEHILAAQATRQQRLAVADDVIENTGtpDAVASDVARLHEK 192
                 334459**********************9987678888888887777 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.9   0.00011      0.11       1      44 [.       5      99 ..       5     178 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
                    EEEE-STTSSHHHHHHHHHHHHT-EEEEHHHHHHHHH...HHHHHT.................................................T CS
  Cytidylate_kin  1 iaiDGPagsGKssvaralaeklglkyldtgalYRala...laalrr.................................................k 44
                    +a+ G  gsGKs+va a a+ lg+k++d+  + R++      al++                                                 +
      CTQ26438.1  5 VALTGGIGSGKSTVADAFAQ-LGVKVIDADVIARQVVepgTPALQAivghfgpqmiapdgtlnrrllrekifahveekawlnallhpliqqetrrQ 99
                    6899999***********95.9*******9999987411123333355566666666666666666666655555555555555555555555553 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1    0.0022       2.2       2      22 ..       5      25 ..       4      42 .. 0.80
   2 ?    4.1   0.1     0.034        34     122     165 ..     116     159 ..      92     174 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0022
         PRK  2 IgvagsSGaGkttvarkleki 22
                ++++g  G+Gk+tva ++ ++
  CTQ26438.1  5 VALTGGIGSGKSTVADAFAQL 25
                689************999874 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.034
         PRK 122 ydervaelldlkiyvdisidlelarklqRDiaeRGrsleavlds 165
                 + +r+   +d    vd+ ++ ++ r + RD+ +R +      ++
  CTQ26438.1 116 VENRLSGQADRVLVVDVPKETQIERTMLRDKVSREHAEHILAAQ 159
                 55668889999999********************9865444444 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.25   2.5e+02       6      18 ..      12      24 ..       8      30 .. 0.87
   2 ?    9.7   0.0   0.00062      0.61     117     164 ..     123     170 ..     101     192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.25
                     TSSHHHHHHHHHH CS
  Thymidylate_kin  6 GaGKttqaellke 18
                     G+GK+t+a+++++
       CTQ26438.1 12 GSGKSTVADAFAQ 24
                     9*******98875 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00062
                      E-SEEEEEESSHHHHHTSCCTTSSTTTSHHHHHHHHHHHHHHHHHHHH CS
  Thymidylate_kin 117 kPdltflldvdpevalkRlakrdeldeeeeeqldflrkvrerylelak 164
                      + d ++ +dv++e++++R + rd+  +e +e +   + +r++ l++a+
       CTQ26438.1 123 QADRVLVVDVPKETQIERTMLRDKVSREHAEHILAAQATRQQRLAVAD 170
                      77999*******************999999999999999998777775 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.0   0.00013      0.13      11      34 ..       2      25 ..       1     192 [. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
                TSEEEEEESTTSSHHHHHHHHTTS CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 11 gekvaivGenGaGKStLlkllagl 34
                g +va++G  G+GKSt++ ++a+l
  CTQ26438.1  2 GYTVALTGGIGSGKSTVADAFAQL 25
                6789***************99986 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00015      0.15       2      24 ..       2      24 ..       1      41 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
                -EEEEEESSTTSSHHHHHHHHHH CS
  APS_kinase  2 gvvvwltGlsgsGKstianalek 24
                g +v ltG  gsGKst+a a+++
  CTQ26438.1  2 GYTVALTGGIGSGKSTVADAFAQ 24
                789***************99874 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0016       1.6       3      20 ..       7      24 ..       5      32 .. 0.85
   2 ?    3.8   0.3     0.039        39      63     127 ..      92     173 ..      66     203 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
        CobU  3 vtGgarSGKSefAeklae 20
                +tGg+ SGKS++A++ a+
  CTQ26438.1  7 LTGGIGSGKSTVADAFAQ 24
                79***********99875 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.039
        CobU  63 laealkeeek..kevvLvDcltlwltnllleeeaek................veekleeeveellealkelkatvvlVsnEvg 127
                 +++  +++ +  ++++L+  + l+++n l  + + +                 ++k+++e +e + a+++++++ + V+++v 
  CTQ26438.1  92 IQQETRRQMQaaTSPYLLWVVPLLVENRLSGQAD-RvlvvdvpketqiertmLRDKVSREHAEHILAAQATRQQRLAVADDVI 173
                 3333333322357888999999999999988654.358999888888888877778888888888888888888888888875 PP

>> tRNA_lig_kinase  tRNA ligase kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.014        14       7      75 ..      10      76 ..       5      86 .. 0.66
   2 ?    4.5   0.0     0.034        34      51      92 ..     121     162 ..     112     196 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.014
                     -TTSSHHHHHHHHHHH-TTSEEEEGGGS-TT-SS-HHHHHHHTTSSTT--EEEEES---SHHHHHHHHH CS
  tRNA_lig_kinase  7 tiGCGkttvaltlenlfgeWghvqnDnitgkdkkklvkealellkkdeskvvlvDrnnhqkreRkqlfe 75
                      iG Gk+tva ++ +l    +++  D i+ +  +  + ++  ++ + + +++  D   +    R+++f 
       CTQ26438.1 10 GIGSGKSTVADAFAQLGV--KVIDADVIARQVVEPGTPALQAIVGHFGPQMIAPDGTLNRRLLREKIFA 76
                     59***********99966..8888888887644444444434444445555555555555555555555 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.034
                      SSTT--EEEEES---SHHHHHHHHHHHHHHHHHH--TT-EEE CS
  tRNA_lig_kinase  51 kkdeskvvlvDrnnhqkreRkqlfeeidelkeeylsydvnvk 92 
                      + +  +v++vD   ++++eR  l +++++ ++e++ +  + +
       CTQ26438.1 121 SGQADRVLVVDVPKETQIERTMLRDKVSREHAEHILAAQATR 162
                      556788999**********************99997766555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.0   0.00092      0.91      27      52 ..       5      37 ..       2     205 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00092
      AAA_16 27 vllsGesGvGKsslvrellralekd........g 52
                v l+G  G+GKs+++++++ +l  +        +
  CTQ26438.1  5 VALTGGIGSGKSTVADAFA-QLGVKvidadviaR 37
                789***************9.55544332223330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 1587.18
//
Query:       CTQ26439.1  [L=347]
Description: GMP reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-80  271.1   1.3    1.8e-80  270.6   1.3    1.1  1  IMPDH     IMP dehydrogenase / GMP reductase domain
    1.9e-05   23.9   0.8    2.7e-05   23.3   0.8    1.4  1  FMN_dh    FMN-dependent dehydrogenase
     0.0068   16.9   0.1      0.015   15.8   0.0    1.6  2  NBD_C     Nucleotide-binding C-terminal domain
  ------ inclusion threshold ------
       0.13   11.9   0.0       0.21   11.2   0.0    1.4  1  dCache_3  Double sensory domain of two-component sensor kinas


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.6   1.3     4e-84   1.8e-80       2     336 ..       9     338 ..       8     342 .. 0.91

  Alignments for each domain:
  == domain 1  score: 270.6 bits;  conditional E-value: 4e-84
                 --GGGEEEE---B-S-GG.GSB--EESS.TT...EEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTSTTSXBXTTSXB-E CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxx.xx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH   2 ltfddvllvpaksevlpk.evdlktklt.kk...iklniPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrspnaakdekgrllv 95 
                 l f dvl+ p++s+++++ +v+l+ ++t k+       +P+++a+mdtv   +mA ala  G ++ +hk+ ++ee  +        + a+ d  ++++v
  CTQ26439.1   9 LGFKDVLIRPKRSTLKSRsDVELEREFTfKHsglTWSGVPIIAANMDTVGTFSMAKALATFGILTAVHKHYTAEEWLAFT------QGASADVLKHVMV 101
                 78**************999*********54434233459**********************************9987765......4677899999999 PP

                 EEEE-SSTTHHHHHHHHHHT..T-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---H CS
                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  96 gaavgvkedalervkalvea..gvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGsiCttrvvagvGvpq 192
                 + + +  + ++e+ ++++++  +++++++d+a+g+se+ ++ v++ ++++++ ++iaGnv+t e +++Li  gad+vkvGiGpGs+Cttrv +gvG pq
  CTQ26439.1 102 STGTS--DADFEKTQQILSQnpQLNFVCIDVANGYSEHFVQFVAKAREAWPQKTIIAGNVVTGEMCEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQ 198
                 77655..55566666665442379*************************************************************************** PP

                 HHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEETTEEEEEEEETTSHHHHHH..-SS-TTS-..--SS-SBE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
       IMPDH 193 ltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspgeviliegrkyKeyrGmgslgamkk..gskdryfqkkeklvpeGv 289
                 l+Av+e+a+aa+  g ++i+DGG ++ gd++kA+  Gad+vmlG +lag eEs g ++  +g+k+  + Gm+s +am++  g   +y        +eG 
  CTQ26439.1 199 LSAVIECADAAHGLGGQIISDGGCTMPGDVAKAFGGGADFVMLGGMLAGHEESGGTIVEENGEKFMLFYGMSSESAMTRhvGGVAKY------RAAEGK 291
                 *****************************************************************************5533455566......589*** PP

                 EEEEE--B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH-EEEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 290 egrvpykgsvkevveqlvgglrsgmgylGaktieelkekakfvrita 336
                   ++p +g+v+++ + ++gglrs+++y+Ga+ ++el ++++f+r+ +
  CTQ26439.1 292 TVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQE 338
                 *******************************************9865 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.8   6.1e-09   2.7e-05     207     303 ..     141     245 ..      46     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 6.1e-09
                 HHHHHHHHHSSEEEEEE.E-SHHHHHHHHHTTESEEEE--GGG.....TSSTT.---HHHCHHHHHHHH...SS-EEEESS--SHHHHHHHHHTT-SEE CS
      FMN_dh 207 dikwlreqtklplvvKG.vltaedakraveaGvdgivvSNHGG.....Rqldg.apatidvLpeiveavgg.rievlvDgGirrGsDvlkAlalGAdav 297
                  +++ re+++ + ++ G v+t e +++++  G+d++ v    G     R   g   + +++  e+++a+ g   +++ DgG +   Dv+kA   GAd+v
  CTQ26439.1 141 FVAKAREAWPQKTIIAGnVVTGEMCEELILSGADIVKVGIGPGsvcttRVKTGvGYPQLSAVIECADAAHGlGGQIISDGGCTMPGDVAKAFGGGADFV 239
                 47889999999988888789999999999999999999888885555543333134568888888999998569************************* PP

                 EESHHH CS
      FMN_dh 298 llGRpf 303
                 +lG  +
  CTQ26439.1 240 MLGGML 245
                 ***865 PP

>> NBD_C  Nucleotide-binding C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.4e-06     0.015      46     149 ..      81     189 ..      66     206 .. 0.77
   2 ?   -3.1   0.0       2.1   9.4e+03     105     130 ..     208     233 ..     199     236 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.4e-06
                 HHHHHHHHHCCTCCT.SSEEEEEECTGHHHH.HH---HHCCC-HHHH....HHHHHHHHHHHHHHHHHCTECEEEEESHHHHHHHHHHCT--EEEEEE. CS
       NBD_C  46 ieraleqaeeallaa.gkdvlvytsrepedvrdaleslqaelglera....geriaaalaeiarrlvergvrrlviaGGdtssavlkaLgvkgleilg. 138
                 +e++l+  + a  a+  k+v+v t ++++d+++ ++ l ++ +l+      ++ +++ ++++++++ e+ +++ +iaG  ++++++++L ++g++i++ 
  CTQ26439.1  81 AEEWLAFTQGA-SADvLKHVMVSTGTSDADFEKTQQILSQNPQLNFVcidvANGYSEHFVQFVAKAREAWPQKTIIAGNVVTGEMCEELILSGADIVKv 178
                 45555555555.333368*************866666667666666599999**************8887999**********************9962 PP

                 EEETTEEEEEE CS
       NBD_C 139 eiapgvplgsa 149
                  i pg + +++
  CTQ26439.1 179 GIGPGSVCTTR 189
                 46666655544 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.1
                 HHHHCTECEEEEE.SHHHH.HHHHHHCT CS
       NBD_C 105 rlvergvrrlvia.GGdts.savlkaLg 130
                 ++  +g+ + +i+ GG t+ ++v+ka+g
  CTQ26439.1 208 AA--HGLGGQIISdGGCTMpGDVAKAFG 233
                 33..678888888899886567777765 PP

>> dCache_3  Double sensory domain of two-component sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.7e-05      0.21     118     145 ..      42      68 ..      16     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.7e-05
    dCache_3 118 tfrvvaPvlaegeqvvGavvfgvsLnnd 145
                   + ++P++a+++++vG +++++ L+  
  CTQ26439.1  42 LTWSGVPIIAANMDTVGTFSMAKALA-T 68 
                 5799*********************9.5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2745.21
//
Query:       CTQ26440.1  [L=401]
Description: assembly protein in type IV pilin biogenesis, transmembrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-56  187.8   8.9    3.9e-29  101.1   2.8    2.4  2  T2SSF           Type II secretion system (T2SS), protein F
  ------ inclusion threshold ------
       0.48   11.1   4.2       0.94   10.1   0.1    2.7  3  Nucleos_tra2_N  Na+ dependent nucleoside transporter N-termin


Domain annotation for each model (and alignments):
>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   2.8   4.4e-33   3.9e-29       2     125 .]      64     186 ..      63     186 .. 0.99
   2 !   90.1   0.4   1.1e-29     1e-25       4     125 .]     269     388 ..     266     388 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.1 bits;  conditional E-value: 4.4e-33
                 HHHHHHHHHTT--HHHHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHCT-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH CS
       T2SSF   2 lrqlatllsaGvplveaLellaeeaengplaeelkriarrlraGgslsealertpssefpelvvqlirageeggnLaevLerlaeyleeerelrrklla 100
                 +rqla+ll+aG+pl+e L+lla+++++ +++  l+++ r+l++G ++s+al+++p   fp+l+ ++i++ge +g+L+  + +la +++e+++l+ k+++
  CTQ26440.1  64 IRQLASLLQAGLPLAEGLSLLAQQQSHAQWQALLEALGRELAQGVAFSAALAQWPQ-AFPPLYLAMISTGELTGKLDICCLQLANQQQEQQRLASKVKK 161
                 89*****************************************************7.99**************************************** PP

                 HHHTTXXXXXXXXXXXXXXXXXXXX CS
       T2SSF 101 allepllllvvallvllillaillp 125
                 al +pl++l +allv+l +l ++lp
  CTQ26440.1 162 ALRYPLIVLSLALLVVLGMLYFVLP 186
                 ***********************98 PP

  == domain 2  score: 90.1 bits;  conditional E-value: 1.1e-29
                 HHHHHHHTT--HHHHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHCT-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       T2SSF   4 qlatllsaGvplveaLellaeeaengplaeelkriarrlraGgslsealertpssefpelvvqlirageeggnLaevLerlaeyleeerelrrkllaal 102
                  la+  saG+++++ L+++ e+ + + ++++l+++++ + +G+++ +al+r +   f++l+ qlir+ge+ g L+++Le+la++++e+  +r+++laa 
  CTQ26440.1 269 ILALTQSAGISFLQGLQSVEESLSCPLWRQRLAQARALIVQGEPIWQALSRCG--GFTPLCLQLIRTGESAGALDQMLENLAHHHREQTYQRADSLAAH 365
                 6889999*********************************************9..9******************************************* PP

                 HTTXXXXXXXXXXXXXXXXXXXX CS
       T2SSF 103 lepllllvvallvllillaillp 125
                 lep++l+++++lv+++++a++lp
  CTQ26440.1 366 LEPMMLVITGSLVGILVVAMYLP 388
                 *********************98 PP

>> Nucleos_tra2_N  Na+ dependent nucleoside transporter N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.9   1.7e+04      13      33 ..      84     104 ..      82     110 .. 0.71
   2 ?   10.1   0.1    0.0001      0.94      12      54 ..     155     197 ..     154     209 .. 0.91
   3 ?    1.5   0.2     0.052   4.6e+02      26      55 ..     258     287 ..     252     292 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.9
                     T-S-GGG--HHHHHHHHHHHH CS
  Nucleos_tra2_N  13 lSenrkainwrtVigglllQf 33 
                     l ++ ++ +w+  + +l+ ++
      CTQ26440.1  84 LAQQQSHAQWQALLEALGREL 104
                     667778888888888887665 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0001
                     HT-S-GGG--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHH CS
  Nucleos_tra2_N  12 llSenrkainwrtVigglllQfvlAlfvlktpagrdvfkalsd 54 
                     l S+ +ka ++ +++  l+l +vl+++ + +p + ++ + +s+
      CTQ26440.1 155 LASKVKKALRYPLIVLSLALLVVLGMLYFVLPEFTAIYQTFST 197
                     689*****************************99999999886 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.052
                     HHHHHHHHHHHHHHHTSHHHHHHHHHHHHH CS
  Nucleos_tra2_N  26 igglllQfvlAlfvlktpagrdvfkalsdl 55 
                     igg  l +++ ++ l  +ag +++++l ++
      CTQ26440.1 258 IGGQQLSLIFTILALTQSAGISFLQGLQSV 287
                     566678889999999999999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 3349.15
//
Query:       CTQ26441.1  [L=461]
Description: putative protein transport with triphosphate hydrolase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-84  282.0   1.6    4.9e-84  281.6   1.6    1.1  1  T2SSE     Type II/IV secretion system protein
    8.4e-06   25.6   0.2    2.6e-05   24.1   0.0    1.9  2  AAA_30    AAA domain
      7e-05   23.3   1.6    0.00071   20.0   0.1    2.4  2  AAA_16    AAA ATPase domain
    8.1e-05   22.8   0.1    0.00029   21.1   0.1    1.9  1  T2SSE_N   Type II secretion system (T2SS), protein E, N-termi
     0.0013   19.0   0.1     0.0061   16.8   0.0    2.2  2  AAA_22    AAA domain
     0.0016   18.3   0.0     0.0016   18.3   0.0    2.3  3  AAA_11    AAA domain
     0.0072   15.9   0.0      0.026   14.1   0.0    1.9  2  AAA_7     P-loop containing dynein motor region
     0.0085   16.1   0.0      0.018   15.1   0.0    1.5  1  AAA_14    AAA domain
     0.0097   16.0   0.1       0.02   15.0   0.1    1.5  1  Nrap_D3   Nrap protein domain 3
  ------ inclusion threshold ------
       0.01   16.2   0.2      0.036   14.4   0.2    2.0  1  AAA_19    AAA domain
      0.028   14.6   0.2        8.7    6.5   0.0    2.5  2  AAA_33    AAA domain
       0.06   13.4   0.0       0.11   12.5   0.0    1.5  1  ResIII    Type III restriction enzyme, res subunit
      0.063   13.0   0.0       0.13   12.1   0.0    1.4  1  AAA_29    P-loop containing region of AAA domain
      0.075   13.5   0.8       0.54   10.7   0.0    2.1  2  AAA_23    AAA domain
      0.094   12.3   0.0       0.21   11.1   0.0    1.5  1  cobW      CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.6   1.6   4.1e-87   4.9e-84       2     272 ..      87     353 ..      86     354 .. 0.98

  Alignments for each domain:
  == domain 1  score: 281.6 bits;  conditional E-value: 4.1e-87
       T2SSE   2 lilleallddekvsdihvekper.vkvrervdgielreveelekaalerlisriaalakldiseerplqdarlp....ekgvrlrvvllPvvagealvi 95 
                 +il +al  ++++sdih+e+ e+ +++r rvdg +l++++ l +++++ +i+r+++la+ldi+e+r++qd+++     ++  ++r+++lP+ +ge++v+
  CTQ26441.1  87 QILEQAL--RQRASDIHIEPTEThLRIRLRVDG-VLHALPLLAPELAAPVIARLKVLASLDIAEHRLPQDGQFAlnlaGRPLSFRIATLPCRYGEKIVL 182
                 5677788..99**********************.**************************************9999999******************** PP

       T2SSE  96 R..kksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnakkakvtfadll 192
                 R  ++  ++l+l+ lg + ++ ++++++l+++   +gl+lv+G+TgsGKt++ly++l+  n ++ +i+ vEDp Ei ++g nq+q+n++ a++tf+++l
  CTQ26441.1 183 RllHQVDQALDLEALGLSSSQLAAFRQALNQP---QGLLLVTGPTGSGKTVTLYSALQARNREQVNICSVEDPLEIPIAGMNQTQINPR-AGLTFNSVL 277
                 ***9****************************...******************************************************.********* PP

       T2SSE 193 raaLRlrPDrimvGEiRdketlei.lkAvnTGHlgslsTlHansaagalerLeqlgaeveaaelkssilavvdivvrlvrk 272
                 ra+LR++PD++mvGEiRd+et+ei lkA++TGHl+ lsTlH+ns+ ++l+rL+q+g  +++++++s + +v  i++rlvrk
  CTQ26441.1 278 RALLRQDPDIVMVGEIRDAETAEIaLKAAQTGHLV-LSTLHTNSTSETLTRLQQMG--IARWMISSALSLV--IAQRLVRK 353
                 ***********************************.********************..*************..******98 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       4.2   5.1e+03     146     184 ..      32      69 ..      27      76 .. 0.55
   2 !   24.1   0.0   2.1e-08   2.6e-05       2      48 ..     199     245 ..     198     257 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.2
      AAA_30 146 igtaeLtevvRqkeseeraaalalregdaeealealadr 184
                 ++ aeL e  R++ ++  ++    +  ++++ l+a +++
  CTQ26441.1  32 TPPAELMEALRFATQKRIDIECWSQ-EQMDKRLQAQEKQ 69 
                 5678888888886654444443333.3333344544444 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 2.1e-08
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggr 48 
                 l+++Q aa++++l++++ + ++tGp G+GKt +l ++ +a ++++ +
  CTQ26441.1 199 LSSSQLAAFRQALNQPQGLLLVTGPTGSGKTVTLYSALQARNREQVN 245
                 7899******************************9998888777654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.18   2.2e+02      95     131 ..      61      98 ..      16     137 .. 0.72
   2 !   20.0   0.1     6e-07   0.00071       9     106 ..     204     302 ..     200     366 .. 0.53

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.18
      AAA_16  95 eawrekleealaavpelagaeasrllellkrll.alls 131
                  + +++ ++a  a+++ +  +a+r+++ l ++l +++s
  CTQ26441.1  61 KRLQAQEKQAQLAQNDGPENIAERVNQILEQALrQRAS 98 
                 22233323332345555666669999999999955554 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 6e-07
      AAA_16   9 leqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy........salaqalareellrqllde.aesaeleawr 98 
                 l+++++al+   +++ +l+l++G+ G+GK+  + ++l+a +++    ++   ++ + +ip               l+++++lr+ll++ ++   +++ r
  CTQ26441.1 204 LAAFRQALN---QPQ-GLLLVTGPTGSGKTVTLYSALQARNREQ---VNICSVEDPLEIPIagmnqtqiN-PRAGLTFNSVLRALLRQdPDIVMVGEIR 294
                 333444443...333.9****************77776555553...33333333223333333333212.2333334466666666644444555555 PP

      AAA_16  99 ekleeala 106
                 ++ ++++a
  CTQ26441.1 295 DAETAEIA 302
                 55555444 PP

>> T2SSE_N  Type II secretion system (T2SS), protein E, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   2.4e-07   0.00029      44     100 ..       9      64 ..       6      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.4e-07
     T2SSE_N  44 flrrygvlPlreedgkllvavvdPldlaaldelqrllgkkgvkpvlatksdidalld 100
                  +rry+++ l+ +++++ +avv+    +++++l+++++k ++++   +++++d+ l+
  CTQ26441.1   9 LCRRYHAMLLHSDEQTISIAVVNTPPAELMEALRFATQK-RIDIECWSQEQMDKRLQ 64 
                 7*************************************9.99988777777777665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.7     2e+03      44      89 ..      50      96 ..       9     118 .. 0.55
   2 !   16.8   0.0   5.1e-06    0.0061       4      30 ..     214     240 ..     208     332 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.7
      AAA_22 44 fvtlpsstsskdllrellralglelka.erlsseellealeqalrar 89
                 +++ s++  ++ l++  ++ +l +++ +++  e++ + leqalr+r
  CTQ26441.1 50 DIECWSQEQMDKRLQAQEKQAQLAQNDgPENIAERVNQILEQALRQR 96
                44455554444444444444444444422333333334444444444 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 5.1e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqld 30 
                  +g+l+vtG++G+GKT++l   l+  +
  CTQ26441.1 214 PQGLLLVTGPTGSGKTVTLYSALQARN 240
                 699*************99877776653 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.4      0.86     1e+03     124     177 ..      58      77 ..      10     112 .. 0.48
   2 !   18.3   0.0   1.3e-06    0.0016       2      42 ..     199     240 ..     198     277 .. 0.86
   3 ?   -1.6   0.1       1.5   1.8e+03     187     214 ..     300     328 ..     289     334 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.86
      AAA_11 124 qlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkel 177
                 q+ k++++++++                                   + ++++ 
  CTQ26441.1  58 QMDKRLQAQEKQA----------------------------------QLAQNDG 77 
                 1111111111111..................................1111111 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.3e-06
      AAA_11   2 lndsqreaiksalsese.itliqGPPGtgKTktivellsqll 42 
                 l +sq+ a+++al++++ + l+ GP G+gKT t+ + l++ +
  CTQ26441.1 199 LSSSQLAAFRQALNQPQgLLLVTGPTGSGKTVTLYSALQARN 240
                 689*************9999**************99988764 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.5
      AAA_11 187 sleeevldeaeivltTlsga.gskllekl 214
                 ++  +  ++ ++vl+Tl++  +s++l++l
  CTQ26441.1 300 EIALKAAQTGHLVLSTLHTNsTSETLTRL 328
                 555566777899****9875266777766 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.3   5.2e+03      75      97 ..      82     104 ..      78     110 .. 0.78
   2 !   14.1   0.0   2.2e-05     0.026      27      66 ..     209     248 ..     200     250 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.3
       AAA_7  75 anqlqdiiesklekrrkgvygPp 97 
                 a+++ +i+e+ l +r+ ++   p
  CTQ26441.1  82 AERVNQILEQALRQRASDIHIEP 104
                 67889999999999998876655 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.2e-05
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkkldkekylslt 66 
                 + l + +  +l++GptG+GKtv++ + l++ ++e++++ +
  CTQ26441.1 209 QALNQPQGLLLVTGPTGSGKTVTLYSALQARNREQVNICS 248
                 5555666678999*************99999999887765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.5e-05     0.018       4     105 ..     217     325 ..     215     337 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.5e-05
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderd.......kkladpe.......kllelileklkeekktylflDEiqevpewekalkslvd 88 
                 +l++tG+  +GKT+ l+  ++ +   +e++   +++d+ +       ++    +       +++++++++l++ +  +++  Ei  ++++e alk    
  CTQ26441.1 217 LLLVTGPTGSGKTVTLYSALQARN--REQVNICSVEDPLEipiagmnQT----QinpraglTFNSVLRALLRQ-DPDIVMVGEIRDAETAEIALKAAQT 308
                 689****************98888..999********999666554311....13334665555555555544.7899*************99999877 PP

      AAA_14  89 egknldvivtGSnskll 105
                  +  l  + t S s  l
  CTQ26441.1 309 GHLVLSTLHTNSTSETL 325
                 66566666666666655 PP

>> Nrap_D3  Nrap protein domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.7e-05      0.02      17      65 ..      61     109 ..      40     124 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-05
                 H-SS---HHHHHHHSSHHHHHHHHHHHHHHHHHGGGEEEEEEEEET-EE CS
     Nrap_D3  17 kakekkeekekldlseaeeallskvssvlkkaLgdRvkliaikleeeew 65 
                 k  +++e++++l  ++  e+++++v+++l++aL +R++ i+i+ +e++ 
  CTQ26441.1  61 KRLQAQEKQAQLAQNDGPENIAERVNQILEQALRQRASDIHIEPTETHL 109
                 33344444444445558899*********************99444444 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2     3e-05     0.036       3      38 ..     209     243 ..     203     338 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3e-05
      AAA_19   3 eavealkekvllvtaGpGtGKTrvlkhivallvelg 38 
                 +a+ + ++++llvt++ G+GKT +l  +++  ++++
  CTQ26441.1 209 QAL-NQPQGLLLVTGPTGSGKTVTLYSALQARNREQ 243
                 455.678899****************9999988776 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.012        14      27      75 ..      53     101 ..       3     150 .. 0.75
   2 ?    6.5   0.0    0.0073       8.7       1      24 [.     217     240 ..     217     338 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.012
      AAA_33  27 llssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvil 75 
                   s+ ++ +rl ++++q +  +++  +++ +++n+++++al+++++ i 
  CTQ26441.1  53 CWSQEQMDKRLQAQEKQAQLAQNDGPENIAERVNQILEQALRQRASDIH 101
                 4456668899999999999999999999************999887443 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0073
      AAA_33   1 lvllvGlpGsGKstlaerllkklg 24 
                 l+l+ G+ GsGK+  + + l+++ 
  CTQ26441.1 217 LLLVTGPTGSGKTVTLYSALQARN 240
                 68999********87766666554 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.1e-05      0.11      14      50 ..     206     241 ..     176     331 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.1e-05
                 HHT......TTS.EEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII  14 nlleklkskrdk.rglikmaTGtGKTlvaaklierllk 50 
                 +++++l  ++ +  +l+  +TG+GKT++++++ ++  +
  CTQ26441.1 206 AFRQAL--NQPQgLLLVTGPTGSGKTVTLYSALQARNR 241
                 333444..45551555999**********888766555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00011      0.13      20      38 ..     213     231 ..     204     248 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
      AAA_29  20 dlkgatlltGpsGsGKSTl 38 
                 +++g  l+tGp+GsGK+  
  CTQ26441.1 213 QPQGLLLVTGPTGSGKTVT 231
                 567899**********954 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.7      0.63   7.5e+02     157     186 ..      58      73 ..      18     102 .. 0.51
   2 ?   10.7   0.0   0.00045      0.54      19      34 ..     215     230 ..     203     238 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.63
      AAA_23 157 elekeleeledekkllekleqekekekele 186
                 +              ++k++q++ek+++l 
  CTQ26441.1  58 Q--------------MDKRLQAQEKQAQLA 73 
                 1..............122222222222111 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00045
      AAA_23  19 kgltlItGpNGaGKTT 34 
                 +gl l+tGp+G+GKT 
  CTQ26441.1 215 QGLLLVTGPTGSGKTV 230
                 699************4 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00018      0.21       3      31 ..     218     246 ..     217     254 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00018
                 EEEEESTTCCHHHHHHHHHCT--SS-EEE CS
        cobW   3 tvltGflGsGKTtLlnhllenraglklav 31 
                 +++tG+ GsGKT  l + l+ r+ +++ +
  CTQ26441.1 218 LLVTGPTGSGKTVTLYSALQARNREQVNI 246
                 579****************8888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      717  (0.0399911); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 3116.26
//
Query:       CTQ26442.1  [L=143]
Description: putative major pilin subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-10   40.4   1.6    2.3e-10   39.6   1.6    1.5  1  N_methyl  Prokaryotic N-terminal methylation motif
    0.00075   20.4   0.1      0.001   20.0   0.1    1.2  1  Pilin     Pilin (bacterial filament)


Domain annotation for each model (and alignments):
>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   1.6   2.6e-14   2.3e-10       1      25 [.       1      25 [.       1      27 [. 0.93

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 2.6e-14
    N_methyl  1 mrkqrGFTLiElLvalaIlaillaa 25
                m kqrGFTLiEl+v++ I+ail+a+
  CTQ26442.1  1 MDKQRGFTLIELMVVIGIIAILSAI 25
                679********************98 PP

>> Pilin  Pilin (bacterial filament)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   1.1e-07     0.001       2      93 ..      36     122 ..      36     137 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHHHHHHHHHHHHHHHCCCSSSCTCCCCCTTBSTCSCCTCEEEEECCCEECCEEEEEECCCSSTCCTTEEEEEEEECT..TSCEEEEE CS
       Pilin   2 RaqvsealalasglKtavaeaalnegktpttaaadiGlasstaicgvisvtveaatggtitatfggnaaakikgktltltrtad..sgsgkWtC 93 
                 +a ++  l +  + +ta++  al++g  +  +  + G++s+t+++  ++++v++   g++t t +++    ++g  +tlt+t d  +g  +W+ 
  CTQ26442.1  36 KAALTDLLQTFVPYRTAIELCALDHGGLTPCDGGSNGIPSPTTTRYLSAMSVAK---GVVTLTGQES----LNGLGVTLTPTWDnaEGVTGWQR 122
                 6777888999999*****88888886655555555*********9999999988...8888877766....66777777777554478888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1060.04
//
Query:       CTQ26443.1  [L=297]
Description: quinolinate phosphoribosyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-59  198.1   0.2    1.1e-58  197.7   0.2    1.1  1  QRPTase_C        Quinolinate phosphoribosyl transferase, C-te
    9.6e-26   89.7   0.1    1.5e-24   85.9   0.0    2.5  3  QRPTase_N        Quinolinate phosphoribosyl transferase, N-te
     0.0024   17.7   0.0     0.0065   16.3   0.0    1.6  1  Biotin_lipoyl    Biotin-requiring enzyme
     0.0083   15.9   0.0      0.026   14.4   0.0    1.8  1  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
       0.12   11.3   0.2       0.17   10.8   0.2    1.2  1  IMPDH            IMP dehydrogenase / GMP reductase domain


Domain annotation for each model (and alignments):
>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.7   0.2   3.1e-62   1.1e-58       1     169 []     131     295 ..     131     295 .. 0.97

  Alignments for each domain:
  == domain 1  score: 197.7 bits;  conditional E-value: 3.1e-62
                 HHHHHHHHHHHHHCTSSEEEE-S---TTTHHHHHHHHHHTTSB--TSSTTTSEEE-HHHHHHHSSHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH CS
   QRPTase_C   1 iAtltarmveaaksakvrildTRkttPglrllekyAvliGGgdnhrlgLsdmvlikdnhiaaagsiveavksvreavdkevkievevesleeleevlea 99 
                 +A+  +r+v+ ++++k+++ldTRkt+Pglr + kyAvl+GGg+nhrlgL+d++lik+nhi+a gsi++av+++ + +++   +eveve+l+ele++l+a
  CTQ26443.1 131 VASVVRRYVDLLAGTKTQLLDTRKTLPGLRTALKYAVLCGGGANHRLGLFDAFLIKENHIIASGSIRQAVEKAFWLHPDVP-VEVEVETLDELEQALKA 228
                 899**************************************************************************9985.***************** PP

                 T-SEEEEES--HHHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB----EEEE CS
   QRPTase_C 100 eadiimLDnfsveelkkaveelkeknkrvlievSGgvtlenveeyaksgvdvisvgalthsvkalDislk 169
                 +adiimLDnf+++ +++av+    ++++ ++evSG+vt ++++ +a++gvd+isvgalt++v+alD+s++
  CTQ26443.1 229 GADIIMLDNFTTDLMREAVK---ITAGQAALEVSGNVTFDTIRVFADTGVDYISVGALTKHVQALDLSMR 295
                 ********************...4577789**************************************95 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0   4.1e-28   1.5e-24       4      89 .]      43     129 ..      41     129 .. 0.97
   2 ?   -2.0   0.0       1.1   3.8e+03      24      52 ..     185     216 ..     182     235 .. 0.60
   3 ?    0.5   0.0      0.18   6.4e+02      48      71 ..     240     262 ..     220     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 4.1e-28
                 --HHHHHHGCTTSEEEEEEEESSSEEE-SHHHHHHHHHHH..TTTEEEESS-TT-EEETTEEEEEEEEEHHHHHHHHHHHHHHHHHHH CS
   QRPTase_N   4 gDlttealipeekkakaeiiakeegvvaGlevaeevfell..pglevellvkDGervekgdvlleieGnarallsaERvaLnllqrlS 89 
                  D+ + +l+p++++++a++i++e+gv++G  ++eevf +l  ++++++++v+DG+ v++ + l+e+eG++r ll++ER+aLn++q lS
  CTQ26443.1  43 NDISA-QLLPQDARSHAVVITREDGVFCGKRWVEEVFIQLagDDVNITWHVADGDAVKADQPLFELEGPSRILLTGERTALNFVQTLS 129
                 68888.99*****************************************************************************998 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
                 ESSSEEE-SHHHHHHHHHHH...TTTEEEESS CS
   QRPTase_N  24 akeegvvaGlevaeevfell...pglevellv 52 
                  ke+ ++a  ++ ++v + +   p++ ve++v
  CTQ26443.1 185 IKENHIIASGSIRQAVEKAFwlhPDVPVEVEV 216
                 56666666554444444444444666666655 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.18
                 EEESS-TT-EEETTEEEEEEEEEH CS
   QRPTase_N  48 vellvkDGervekgdvlleieGna 71 
                 ++l +++  ++++g+  le++Gn+
  CTQ26443.1 240 TDL-MREAVKITAGQAALEVSGNV 262
                 444.4899999***********97 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.8e-06    0.0065      11      37 ..      85     108 ..      79     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.8e-06
                    EEEE.ECSESSSTTCEE-TTSEEEEEE CS
  Biotin_lipoyl  11 sveegvvevlvkvGdkVkagqvlaeve 37 
                    +v    ++++v++Gd+Vka+q+l e+e
     CTQ26443.1  85 DVN---ITWHVADGDAVKADQPLFELE 108
                    444...89*****************99 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.2e-06     0.026      15      34 ..      89     108 ..      88     111 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.2e-06
  Biotin_lipoyl_2  15 qlnVkdGqrVkaGdvLaelD 34 
                      +++V dG+ Vka + L+el+
       CTQ26443.1  89 TWHVADGDAVKADQPLFELE 108
                      699***************97 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   4.9e-05      0.17      99     173 ..     212     281 ..     182     283 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.9e-05
                 E-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  99 vgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvG 173
                 v+v+ ++l+++++ ++ag+d++++d     ++ + eavk    ++  +  ++Gnv t + ++ ++++g+d + vG
  CTQ26443.1 212 VEVEVETLDELEQALKAGADIIMLDNFT--TDLMREAVKITAGQA-AL-EVSGNV-TFDTIRVFADTGVDYISVG 281
                 6677788999999************755..556666666555555.33.58***8.7899**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2212.94
//
Query:       CTQ26444.1  [L=187]
Description: N-acetyl-anhydromuranmyl-L-alanine amidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-26   91.1   0.0    8.4e-26   90.9   0.0    1.1  1  Amidase_2  N-acetylmuramoyl-L-alanine amidase


Domain annotation for each model (and alignments):
>> Amidase_2  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0   4.7e-30   8.4e-26      17     126 .]      51     167 ..      24     167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 4.7e-30
                 -HHHHHHHHHHSHHHHTTTS..S-SEEE-SSSSEEESS-TTCEESSSSS......EHCHHGEEEEEESSTTEEESCHHHHHHHHHHHHHHHHHHHH.TE CS
   Amidase_2  17 saagalavaaaeyaastngs.igyhylidkdGtiyqlvdengrawHagd......kggNdnsigIElvgngdgkeppteaqyealakLvaallkry.gi 107
                  ++g+l+ +a++++a++++  +++h+li++dG+i+q+v++++rawHag       + +Nd sigIEl+g+   + ++t+aqy++la+++  l++ y  i
  CTQ26444.1  51 LFTGTLDPHAHPFFAEIAHLrVSAHCLIRRDGEIVQYVPFDKRAWHAGVscyqgrERCNDFSIGIELEGTD--TLAYTDAQYRQLAAVTDLLIALYpAI 147
                 467788888999999866665669**********************************************7..*******************9999554 PP

                 EEGGGEEEHHHH...TB-TTCT CS
   Amidase_2 108 ppdrrvvgHsdi...rktdPgp 126
                   ++++ gHsdi   rktdPgp
  CTQ26444.1 148 --AENIAGHSDIapvRKTDPGP 167
                 ..467****999999******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1485.32
//
Query:       CTQ26445.1  [L=284]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.8e-163  541.0  12.0   6.5e-163  540.9  12.0    1.0  1  AmpE       Regulatory signalling modulator protein AmpE
  ------ inclusion threshold ------
      0.058   12.6   6.9       0.99    8.6   6.5    2.7  1  CobD_Cbib  CobD/Cbib protein
      0.089   12.3   3.6       0.26   10.8   3.6    1.8  1  DUF4044    Protein of unknown function (DUF4044)


Domain annotation for each model (and alignments):
>> AmpE  Regulatory signalling modulator protein AmpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  540.9  12.0  1.1e-166  6.5e-163       1     284 []       1     284 []       1     284 [] 1.00

  Alignments for each domain:
  == domain 1  score: 540.9 bits;  conditional E-value: 1.1e-166
        AmpE   1 mtlftlllvlaverlfklgehwqldhrlevvfrrvkeaslvktllltivamvvvlailrllqgllfglpllllwillgllcigagkvrkhyraylkaaa 99 
                 mtlft+llvl++erlfklgehwqldhrlevvfrr+k++sl  tll+t+va++vv++i+rllqg+lf++pll++willgllcigagkvr hy+aylkaa+
  CTQ26445.1   1 MTLFTTLLVLIAERLFKLGEHWQLDHRLEVVFRRIKHFSLPGTLLMTLVAVAVVYIIQRLLQGQLFNIPLLVFWILLGLLCIGAGKVRLHYHAYLKAAS 99 
                 9************************************************************************************************** PP

        AmpE 100 rgdadaseemaeelalihglpvdasekerlrelqnallwinfryylaplfwfvvagpygpvalvgyavlrayqtwlarrktpleraqsgvdallhvldw 198
                 r+d++a+++ma+el+lihg+p +++e+e+l+elqnallwin+ryylaplfwfvv+g++gp++l++y+vlra+qtwlar++tp++r qsg+d++lh++dw
  CTQ26445.1 100 RNDSRACDAMASELTLIHGVPPGCDEREYLSELQNALLWINYRYYLAPLFWFVVGGAWGPLTLIAYSVLRAWQTWLARYQTPHHRLQSGIDGILHIVDW 198
                 *************************************************************************************************** PP

        AmpE 199 ipvrlagvayallghgekalpawfaslgdlrssqyqvltrlaqfslarephldkvetpkaavslakkvtlvvvvvvalltiygalv 284
                 +pvrl+gv+yal+ghgekalpawfaslgd++ssqyqvltrlaq+slareph+dkv+tpkaavs+akk++lvvvv++alltiyg+lv
  CTQ26445.1 199 LPVRLVGVVYALVGHGEKALPAWFASLGDRHSSQYQVLTRLAQYSLAREPHVDKVATPKAAVSMAKKTSLVVVVIMALLTIYGTLV 284
                 ************************************************************************************98 PP

>> CobD_Cbib  CobD/Cbib protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   6.5   0.00016      0.99      42     215 ..      39     222 ..      11     268 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00016
   CobD_Cbib  42 rlaGvllalllvllallvalllllla...laall...glvlealllkltlalrsLleevrkvakal.kgd...leaaReavsmiVgRdtseldeeeiar 130
                  l G+ll   ++l+a++v++++++l+   l   +    lv+ +ll  l++++  ++ + ++ +ka  ++d    +a  +++  i    +  +de e ++
  CTQ26445.1  39 SLPGTLL---MTLVAVAVVYIIQRLLqgqL---FnipLLVFWILLGLLCIGAGKVRLHYHAYLKAAsRNDsraCDAMASELTLI-HGVPPGCDEREYLS 130
                 3455444...44444445555555442222...2234568999999999***9*999999999999456634344455555544.5567899999*999 PP

   CobD_Cbib 131 AavEsvaENlsDgvvaPlfyflllglpgalaykavnTlDsmvGYkneryedfGwaaArlD...DllnyiPARltalllala....aalriar 215
                     ++       ++aPlf+f+++g++g l+  a + l +   +  +  + + +    +D    ++ ++P Rl+++++al+    +al +++
  CTQ26445.1 131 ELQNALLWINYRYYLAPLFWFVVGGAWGPLTLIAYSVLRAWQTWLARYQTPHHRLQSGIDgilHIVDWLPVRLVGVVYALVghgeKALPAWF 222
                 999999999999************99887776666666666665555555555666666622235679999999999999655553333333 PP

>> DUF4044  Protein of unknown function (DUF4044)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.6   4.4e-05      0.26      10      28 ..     265     283 ..     264     284 .] 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.4e-05
     DUF4044  10 KiTkvvvwlMliaTVGSvl 28 
                 K  +vvv++M+++T+ ++l
  CTQ26445.1 265 KTSLVVVVIMALLTIYGTL 283
                 6779***********9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2317.62
//
Query:       CTQ26446.1  [L=316]
Description: Alpha-N-arabinofuranosidase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-77  260.3   1.1    2.4e-77  260.1   1.1    1.0  1  Glyco_hydro_43  Glycosyl hydrolases family 43


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.1   1.1   1.3e-81   2.4e-77       2     288 .]       5     306 ..       4     306 .. 0.97

  Alignments for each domain:
  == domain 1  score: 260.1 bits;  conditional E-value: 1.3e-81
                     ESESBCSSEESEEEEEETTCEEEEEEEBTEESEEEEEEESSSSSCEEEEECEESTTTCSTTTEECTEEEEEEEETTEEEEEEE......EEETTC CS
  Glyco_hydro_43   2 rnPvlsgfypDpsilrvgedyYlvtstfewfpglrifhSkdLvnWkqvgrvlerrsqlsmkgknasWAPeiskhdgkyylyyt......atkkge 90 
                      nP+++++ +Dp+ilr  + yY++  +++++++l+i+++ +L++++++++v+++r   s+++++++WAPe++++dgk+y+y++       ++ g+
      CTQ26446.1   5 PNPFIEQR-ADPFILRHLS-YYYFIASVPEYDRLEIRRAVTLEGLRDAEPVVVWRAPQSGPMSQLIWAPELHEIDGKWYIYFAaththdLDALGM 97 
                     59**9999.9********9.7777777799*****************************************************999888788899 PP

                     CCSEEEEEEESSTT...S--EECEESSCS.TSSECEEEEEEETTSEEEEEEEEEHCC.CSEEEEEEEEEETTTTEEEEEEEEEEECGC..CTCTT CS
  Glyco_hydro_43  91 akqgifvvtadspe...Gpwsdpiklkts.gssgiDpslfedddGkkYlvwgqwdkr.eghseiylaeldddtlklkgektklikagt..elkgl 178
                     +++++fv+++++ +   G w+++++++t+ +++++D+++f+++ Gk++++w+q+ +  eg+s++ylae++++++ + +++ +l+k+++  e++g+
      CTQ26446.1  98 FQHRMFVLECADSDpltGRWQEKGQVVTPfDTFALDATTFTHQ-GKRWYLWAQKSPHiEGNSNLYLAEMANPWTLKGEPV-MLSKPEFdwECRGF 190
                     9999********99999*********999**************.*********99999***************9999998.******999***** PP

                     BBEEEEEEEEETTEEEEEEEESTSSTTEEEEE...EEESSTTSGGEEECTCCSEE.TBTTSTSEEEEEEEEEE-TTSSEEEEEEEESC...CTTC CS
  Glyco_hydro_43 179 kvtEGPhlykrdgyyYLlaaeggtgseyavvv...arsksllgPyewkkknpiltsrspeepiqgpGHaslvetpdgewyivyhagrp...egrg 267
                     kv+EGP+++ +++++++ +++++t+++y++++    r +++l P++w+k +++++ +s e++++gpGH+s+++tp+ge+++vyha+++   eg++
      CTQ26446.1 191 KVNEGPAVLMHGDKLFISYSASATDENYCMGLlwiDRQADPLQPANWHKAPQPVFRTSYENRQYGPGHNSFTQTPEGEDVLVYHARNYteiEGDP 285
                     *********************************************************************************************** PP

                     CGTTSSEEEEEEEEEETTSEE CS
  Glyco_hydro_43 268 lytlgRetllqrvewkaDGwp 288
                     ly+++R+t+l+ v w++DG+p
      CTQ26446.1 286 LYDPNRHTRLKLVSWREDGMP 306
                     *******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2721.39
//
Query:       CTQ26447.1  [L=468]
Description: Inner membrane symporter YicJ [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.8e-104  348.3  34.4   5.4e-104  348.1  34.4    1.0  1  MFS_2            MFS/sugar transport protein
    9.3e-12   44.5  26.6    9.3e-12   44.5  26.6    2.0  2  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.32    9.6  21.3      0.085   11.5   1.0    3.6  4  ATG22            Vacuole effluxer Atg22 like


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.1  34.4  9.1e-108  5.4e-104       1     426 [.      13     432 ..      13     433 .. 0.98

  Alignments for each domain:
  == domain 1  score: 348.1 bits;  conditional E-value: 9.1e-108
       MFS_2   1 syglgalaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfiw 99 
                 +yg+g++++ni+  ++ ++ ++Fytd++gl +alvg++ll++r++Da+tDpi+G+l+d+t+ ++Gr+rPwll  a ++a++ +l+ft+pe+ + +k+i+
  CTQ26447.1  13 GYGMGDAGCNIIFGAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAVTDPIMGALADRTRSKYGRFRPWLLWIAFPYALFSVLMFTTPEWTYNSKVIY 111
                 6************************************************************************************************** PP

       MFS_2 100 llvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkerve 198
                 ++vty+ll i+yt+++ipy+sl++v+t+d++eR   +s+r+++  ++++l ++   +++ ++gg ++++kgy +++ + a + ++++++++++++er  
  CTQ26447.1 112 AFVTYFLLSITYTAINIPYCSLGTVMTADPKERVACQSYRFVMVGIATLLLSLTLLPMADWFGG-ADKAKGYQMAMTVLAFIGMCMFLFCFATVRERI- 208
                 ***************************************************************9.********************************5. PP

       MFS_2 199 mrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvv.tisallgiplwqplakrlgkkntyllga 296
                      +++ ++  +l ++lk+v +n++++++lll l+++ +++++ ++++Yy+t v+g+ + ++++++ + ++++++g++l+++l+ r++k +++++  
  CTQ26447.1 209 -----RPAVQTNDELKKDLKDVWKNDQWVRILLLTLCNVCPGFIRMAATMYYVTWVMGQSTHFATLFISLgVVGMMIGSMLAKVLTDRWCKLQVFFWTN 302
                 .....468999999********************************************8877777777666**************************** PP

       MFS_2 297 lltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsafgyrakasvqsp 395
                 ++++v++  +++++p  ++l +vl+++ ++  ++   l ws+++dv Dyge+ktGkr +g+ f+ ++f+ k++ +++++++g+lLs++gy+a+a +qs+
  CTQ26447.1 303 IVLAVFSCAFYFFNPHATTLIMVLYFLLNILHQIPSPLHWSLMSDVDDYGEWKTGKRITGISFSGNLFFLKVGLAVAGAMVGFLLSWYGYDAGAKAQSA 401
                 *************************************************************************************************** PP

       MFS_2 396 qvvlalrllyavlpavlllvallllvrypln 426
                 +++ ++ ll++v+p+v +l+++ ++ + +++
  CTQ26447.1 402 SALNGIVLLFSVIPGVGYLITAGVVRLLKVD 432
                 ********************99998888877 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5  26.6   1.6e-15   9.3e-12      13     326 ..      26     346 ..      19     351 .. 0.74
   2 ?   -2.9   6.4       0.4   2.4e+03     129     166 ..     371     414 ..     353     449 .. 0.67

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 1.6e-15
       MFS_1  13 silgpalplalaedlgispseigllltlyalgaavaslplGrlsd....rfGrrr.vlllglllfalglllll....fa..sslwlllvlrvlqGlga. 99 
                 +++++++  ++++ +g++p+ +g ll  + +  av+ +++G+l+d    ++Gr r +ll+ ++ +al+++l++    ++  s + + +v  +l ++++ 
  CTQ26447.1  26 GAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAVTDPIMGALADrtrsKYGRFRpWLLWIAFPYALFSVLMFttpeWTynSKVIYAFVTYFLLSITYt 124
                 334444444999*********************************888888*9999************3333324444465556679999999999996 PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkeeekgt 191
                 ++ +p +   ++  + ++er    ++  ++++++++l  l    +a+++g       ++ ++ +la++++ +f++  ++ +++++ r+ + + +e    
  CTQ26447.1 125 AINIPYCSLGTVMTADPKERVACQSYRFVMVGIATLLLSLTLLPMADWFGgadkakgYQMAMTVLAFIGMCMFLF--CFATVRERIRPAVQTNDE---- 217
                 77777777778888888*********************999999999*************************996..777777777777777777.... PP

       MFS_1 192 gpaplvpawkallkdpvlw..illialllf....ffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallll 284
                  ++ l++    ++k+   w  i l+  l++    f+ +++++++++  + +  ++++ l ++  l+++++++  +++la  l dr+ +    +++ ++l
  CTQ26447.1 218 LKKDLKD----VWKND-QWvrI-LLLTLCNvcpgFIRMAATMYYVTWVMGQSTHFAT-LFIS--LGVVGMMI--GSMLAKVLTDRWCKLQVFFWTNIVL 305
                 4555555....55555.36643.3333333243366666688888888888888883.4433..34444443..477999999**99977777777777 PP

       MFS_1 285 llaalglallavtssavllllvlvliGfglgfvfpsllalas 326
                 ++++++++++++   ++l++++++l+ + + + +p+ ++l+s
  CTQ26447.1 306 AVFSCAFYFFNPH-ATTLIMVLYFLLNILHQIPSPLHWSLMS 346
                 7777777777776.5666666777777776666666666655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.4
       MFS_1 129 gfslGailgpllggllasslg......Wravfyilaivsllafv 166
                 +  +G +++ +  g+l+s++g       +++  +++iv+l++++
  CTQ26447.1 371 FLKVGLAVAGAMVGFLLSWYGydagakAQSASALNGIVLLFSVI 414
                 55567777777777777777755556655566666666666544 PP

>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.3   1.9e-05      0.11      82     150 ..      56     132 ..      49     151 .. 0.81
   2 ?   -0.5   0.3     0.061   3.7e+02      68     340 ..     146     199 ..     135     208 .. 0.55
   3 ?   11.5   1.0   1.4e-05     0.085     413     467 ..     261     315 ..     260     320 .. 0.93
   4 ?   -1.2   0.5       0.1     6e+02     327     369 ..     377     420 ..     365     427 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.9e-05
       ATG22  82 llqavvvislsglADyg.....nyrknlLlafaligslstilfllvtpkkY....llgavlyivsntcfgaslvllns 150
                 ++ av+ +++++lAD++     ++r++lL + a+ ++l+++l+ +  + +Y    + + v y + +++++a+++ + s
  CTQ26447.1  56 VIDAVTDPIMGALADRTrskygRFRPWLLWI-AFPYALFSVLMFTTPEWTYnskvIYAFVTYFLLSITYTAINIPYCS 132
                 5789999********77666669****9976.5667777777777788888888788888999999999999887766 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.061
       ATG22  68 dtaSfvlytfslsvllqavvvisls...glADygnyrknlLlafaligslstilfllvtpkkYllgavlyivsntcfgaslvllnsfLPllvredpelq 163
                 + +S+ + + ++++ll  ++++ ++   g AD  +  ++ ++++a+ig+                                                  
  CTQ26447.1 146 ACQSYRFVMVGIATLLLSLTLLPMAdwfGGADKAKGYQMAMTVLAFIGM-------------------------------------------------- 194
                 5566666666666666666666554333455555555555555555543.................................................. PP

       ATG22 164 eaeeeeeeeeessetaeeeeskelklstriSslGlaigylgailvqiisilivialgstatfslrlalllvGlwWliftipaalllkkrpgpplpkgls 262
                                                                                                                    
  CTQ26447.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

       ATG22 263 yliygwkslgrtlkqarklkdvllfLvawfllsdgiatvsstavlfaktelkmstaklillsivaviaavlGaflwpl 340
                                                                                           ++ +
  CTQ26447.1 195 -------------------------------------------------------------------------CMFLF 199
                 .........................................................................32222 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 1.4e-05
       ATG22 413 GkEaaFFsLyaitdkgssvigplivglItDrtgnirsafvflavLlvvplpllll 467
                 G+ ++F  L+  ++  + +ig+++  ++tDr+  +++ f+ ++vL v++++++++
  CTQ26447.1 261 GQSTHFATLFISLGVVGMMIGSMLAKVLTDRWCKLQVFFWTNIVLAVFSCAFYFF 315
                 67778889*******************************************9987 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.1
       ATG22 327 aviaavlGaflwplvsr.rlnlktkktllaiivlfeliplyGll 369
                 av+ a++G +l ++ +    ++++ + l  i++lf++ip  G+l
  CTQ26447.1 377 AVAGAMVGFLLSWYGYDaGAKAQSASALNGIVLLFSVIPGVGYL 420
                 45567888777775544145667778899999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1012  (0.0564449); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 3286.75
//
Query:       CTQ26448.1  [L=456]
Description: aromatic amino acid transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.4e-125  418.9  45.6   2.9e-125  418.6  45.6    1.0  1  AA_permease    Amino acid permease
    2.9e-41  141.7  48.3    3.7e-41  141.4  48.3    1.0  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.6  45.6  3.2e-129  2.9e-125       1     471 [.      18     448 ..      18     452 .. 0.99

  Alignments for each domain:
  == domain 1  score: 418.6 bits;  conditional E-value: 3.2e-129
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ialgg+iGtglf+g+++v+++aGp g++l+y++ag++ fl+m++lge+++  p++g+f+++a +++g  +Gf+ G+ny++++++v+++elta++
   CTQ26448.1  18 HIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGGFAGFASGWNYWVLYVLVAMAELTAVG 114
                  99**************************.********************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeeg 196
                   +iqfw   +++p +w+ +avf++++ +inl +vkv+ge+ef++a+ik++a++a+i++g +ll++g++ ++a++r+l+d+g+    +lp+g       
   CTQ26448.1 115 KYIQFW--WPEIP-TWASAAVFFIAINAINLTNVKVFGEMEFWFAIIKVVAVVAMILFGGWLLFSGNGGPQATVRNLWDQGG----FLPHG------- 198
                  ******..*****.********************************************************************....*****....... PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplina 294
                   f++ +++++i++f+f G elv+i+a+E+++Pe+siPka++qv++ri+ifYv+sl+++ +l+p++  +  +      spfv++++e+g  ++a+ +n+
   CTQ26448.1 199 -FYGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYVGSLAVLLSLLPWTRVTADT------SPFVLIFHELGDTLVANALNV 289
                  .*****************************************************************88888......9******************** PP

  AA_permease 295 viltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRk 392
                  v+ltaals++ns++y+ sR+l+ la++g aPk l  v+krgvP++ il+s+++ +l++l+++l+++  ++f  l+a++  + +i+w +i+l++++fR+
   CTQ26448.1 290 VVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALLSVDKRGVPVNTILVSALVTALCVLINYLAPE--SAFGLLMALVVSALVINWAMISLAHMKFRR 385
                  ******************************************************************..****************************** PP

  AA_permease 393 alkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvk 471
                  a+k qg      +f a ++plg +l+l+++ ++l+i+ +++ ++             +++ li +++ +++vg+ ++ k
   CTQ26448.1 386 AKKQQGV---VTRFPALFYPLGNWLCLLFMAAVLVIMLMTPGMA-------------ISVWLIPVWIAVLGVGYLFKEK 448
                  *999999...78********************************.............****************999876 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.4  48.3   4.1e-45   3.7e-41       8     418 ..      21     432 ..      17     442 .. 0.88

  Alignments for each domain:
  == domain 1  score: 141.4 bits;  conditional E-value: 4.1e-45
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    ++++g +ig+g f  +  ++ s+gp +il + ia +i +l+++  + E+    p  g  ++++++ +g +++f s+w +w+ yv+v+++ l+++++
     CTQ26448.1  21 LIALGGAIGTGLFLGSasVIQSAGPGIILGYAIAGFIAFLIMR-QLGEMVVEEPVAGSFSHFAYKYWGGFAGFASGWNYWVLYVLVAMAELTAVGK 115
                    58899*********99999999*******99999999977776.556664449******************************************* PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl....stetdtffpngwpgvllg 193
                    y+++++ p++      t   a++++i + +in+ ++k  + + ++ +i+k++ ++++++  g+++++g+g +++     ++++ f+p+g  g +++
     CTQ26448.1 116 YIQFWW-PEIP-----TWASAAVFFIAINAINLTNVKVFGEMEFWFAIIKVVAVVAMILFGGWLLFSGNGGPQAtvrnLWDQGGFLPHGFYGLVMM 205
                    ****99.7764.....4567889*****************************999999999***********888866444445************ PP

  AA_permease_2 194 llivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilialsllga 287
                    ++i+++sf+G e +   + e+ +    +pka++ ++  +l++y++   ++l  +p+  ++  ++  s++ l f+ +g + va ++++++  ++l  
     CTQ26448.1 206 MAIIMFSFGGLELVGITAAEADNpeQSIPKATNQVIYRILIFYVGSLAVLLSLLPWTRVTA-DT--SPFVLIFHELGDTLVANALNVVVLTAALSV 298
                    ********************6665489********************************96.44..3699*******99***************** PP

  AA_permease_2 288 intavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphl...k 380
                     n++v+ +sr+l+ la++g  P+ + +v+k+g p+++i ++a+v+ +++l+ +la+++a+ +l+++ + +l+i +++++++ ++ r+ ++++    
     CTQ26448.1 299 YNSCVYCNSRMLFGLAQQGNAPKALLSVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKKQQgvvT 394
                    *********************************************99999999*************************************995555 PP

  AA_permease_2 381 rpgkilvaiigalfllfllvalffppkgpatqssliyt 418
                    r+ +    +   l+llf+ ++l +++ +p    s+++ 
     CTQ26448.1 395 RFPALFYPLGNWLCLLFMAAVLVIMLMTPGMAISVWLI 432
                    55544444555777777777777666666555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 3301.97
//
Query:       CTQ26449.1  [L=59]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 479.21
//
Query:       CTQ26450.1  [L=259]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-26   89.7   0.4    1.7e-25   88.4   0.4    1.7  1  GntR            Bacterial regulatory proteins, gntR family
      1e-17   64.7  12.3    2.3e-17   63.6  12.3    1.6  1  FCD             FCD domain
    0.00021   21.2   0.2      0.001   19.0   0.0    2.2  2  MarR            MarR family
    0.00038   20.3   0.4     0.0016   18.3   0.1    2.2  2  MarR_2          MarR family
    0.00049   20.3   0.2     0.0061   16.8   0.1    2.3  2  PaaX            PaaX-like protein
     0.0023   17.6   0.0      0.006   16.3   0.0    1.7  1  HTH_DeoR        DeoR-like helix-turn-helix domain
     0.0029   17.5   0.0     0.0086   16.0   0.0    1.8  1  HTH_11          HTH domain
      0.003   17.1   0.0     0.0068   15.9   0.0    1.6  1  HTH_24          Winged helix-turn-helix DNA-binding
     0.0046   17.0   0.1      0.021   15.0   0.1    2.1  1  HTH_28          Helix-turn-helix domain
     0.0053   16.6   0.3      0.022   14.6   0.0    2.1  2  TrmB            Sugar-specific transcriptional regulator TrmB
  ------ inclusion threshold ------
      0.019   15.1   0.0      0.033   14.4   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.051   13.6   0.9       0.12   12.4   0.0    2.1  2  HTH_29          Winged helix-turn helix
      0.087   12.6   0.0       0.24   11.2   0.0    1.7  1  HTH_10          HTH DNA binding domain
      0.095   13.1   0.0       0.22   11.9   0.0    1.6  1  Rrf2            Transcriptional regulator
       0.13   12.7   0.5          1    9.9   0.0    2.6  2  HTH_27          Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.4   1.4e-28   1.7e-25       2      64 .]      12      74 ..      11      74 .. 0.97

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 1.4e-28
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                ++ ++++L+ +Il+g+lrpG+kLP+ereLa++f+Vsr+++ReA++rLea+gl+ rrqg+GtfV
  CTQ26450.1 12 SDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFV 74
                6789**********************************************************9 PP

>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6  12.3   1.9e-20   2.3e-17       1     124 [.      99     226 ..      99     227 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 1.9e-20
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlals...sperlees 96 
                 dl+e+R++LE+ aa  aa r +d+d ++++el++a+e+a ++gdl++ + a  ++  a+ eaa+n vl +ll+ +++ l++  r +++   +++++   
  CTQ26450.1  99 DLLETRHALEGIAAYYAALRSNDEDRDRIRELHQAIERAQQSGDLDAESGAVVQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNFEllyARREMLPL 197
                 799*****************************************************************************9555555558877777777 PP

         FCD  97 laeHr.aildAirardadaAraamrrHle 124
                 +  Hr +i++Ai a+++++Ar+a +rHl+
  CTQ26450.1 198 VSNHRtRIFEAIMAGEPEQAREASHRHLA 226
                 7777769********************97 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   8.3e-07     0.001      20      51 ..      37      68 ..      28      69 .. 0.93
   2 ?   -2.3   0.1       3.8   4.5e+03       7      18 ..     165     176 ..     163     179 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 8.3e-07
                HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR 20 vseLakklgvskstvtrvldrLekkGlieRsk 51
                  eLak++ vs++++ +++ rLe kGl+ R++
  CTQ26450.1 37 ERELAKQFDVSRPSLREAIQRLEAKGLLLRRQ 68
                469**************************997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.8
                 HHHHHHHHSTTE CS
        MarR   7 viLrilyeqgpl 18 
                 v+L++l++++p+
  CTQ26450.1 165 VLLHLLRCMEPM 176
                 789999999887 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   1.4e-06    0.0016      25      56 ..      38      69 ..      22      71 .. 0.90
   2 ?   -2.6   0.0       4.5   5.4e+03      10      23 ..     166     177 ..     164     183 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.4e-06
                HHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 25 gelarrlglsksavsrilkrLvaaGLverrpg 56
                +ela+ +++s++++  +++rL+a+GL+ rr g
  CTQ26450.1 38 RELAKQFDVSRPSLREAIQRLEAKGLLLRRQG 69
                69*************************99976 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.5
                 HHHHHHCTTTSEEE CS
      MarR_2  10 vLaaLgrrpgrdlt 23 
                 +L+ L++ ++  + 
  CTQ26450.1 166 LLHLLRCMEP--ML 177
                 6888999988..54 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   5.1e-06    0.0061      28      59 ..      39      70 ..      38      74 .. 0.92
   2 ?    0.7   0.0      0.53   6.4e+02      42      64 ..     132     153 ..     127     158 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.1e-06
        PaaX 28 rllaelGiseslvRaalsRlakaGwlvrekeg 59
                +l +++++s  ++R a+ Rl+++G+l r + g
  CTQ26450.1 39 ELAKQFDVSRPSLREAIQRLEAKGLLLRRQGG 70
                6889**********************999877 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.53
        PaaX  42 aalsRlakaGwlvrekegrrsfY 64 
                  a+ R ++ G+l++e  +  + Y
  CTQ26450.1 132 QAIERAQQSGDLDAESGA-VVQY 153
                 5999********998755.5555 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     5e-06     0.006      19      56 ..      39      76 ..      38      77 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5e-06
    HTH_DeoR 19 elvellgvSeaTiRRDLneLeeqglltRthGGavsiss 56
                el+ +++vS    R  ++ Le++gll R  GG ++++s
  CTQ26450.1 39 ELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFVQS 76
                89*****************************9888776 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   7.2e-06    0.0086      20      44 ..      39      63 ..      36      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.2e-06
      HTH_11 20 eLAeeLnvSrrtvrrdIkaLeelgv 44
                eLA++++vSr   r  I++Le++g+
  CTQ26450.1 39 ELAKQFDVSRPSLREAIQRLEAKGL 63
                9**********************95 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.7e-06    0.0068      21      46 ..      38      63 ..      36      64 .. 0.96

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.7e-06
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGl 46
                reLA++ ++S++ +++ ++rLe +Gl
  CTQ26450.1 38 RELAKQFDVSRPSLREAIQRLEAKGL 63
                8************************8 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.7e-05     0.021      16      51 ..      38      71 ..      36      72 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-05
      HTH_28 16 reaArelgisrrtvyrWikryeegGiagLvprrrrp 51
                re+A+++ +sr +++  i+r+e+ G+  L+ r +++
  CTQ26450.1 38 RELAKQFDVSRPSLREAIQRLEAKGL--LLRRQGGG 71
                79***********************9..88888875 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.9e-05     0.022      26      57 ..      38      69 ..      36      77 .. 0.91
   2 ?   -2.8   0.1       5.1   6.1e+03      31      48 ..     234     251 ..     228     252 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-05
                CHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB 26 deiaeelgvprskvYevLrsLedkGlVerekg 57
                +e+a++ +v+r++  e++++Le kGl  r++g
  CTQ26450.1 38 RELAKQFDVSRPSLREAIQRLEAKGLLLRRQG 69
                79************************999887 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.1
                 CTTSSCHCHHHHHHHHHH CS
        TrmB  31 elgvprskvYevLrsLed 48 
                 +  +++s+  ++Lr+L +
  CTQ26450.1 234 DRSREQSRRERSLRRLQQ 251
                 556788888899999876 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.8e-05     0.033      19      52 ..      31      64 ..      10      71 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.8e-05
                    HHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
  Fe_dep_repress 19 ekkvvktkdlaerLnvspssVsemlkkLekdGyv 52
                    ++k +   +la+  +vs +s  e +++Le +G++
      CTQ26450.1 31 GEKLPPERELAKQFDVSRPSLREAIQRLEAKGLL 64
                    566777889***********************97 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0    0.0001      0.12      16      49 ..      38      69 ..      36      72 .. 0.85
   2 ?   -2.2   0.2       3.6   4.3e+03      44      55 ..     232     245 ..     228     252 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
      HTH_29 16 sqiAkllglsrrtvyrwlkrfeegGlaalldrrr 49
                +++Ak+ ++sr++ + ++ r e++Gl  ll+r +
  CTQ26450.1 38 RELAKQFDVSRPSLREAIQRLEAKGL--LLRRQG 69
                689**********************6..776444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.6
      HTH_29  44 lld.rrr.sgrprn 55 
                 lld +r+ s+r r 
  CTQ26450.1 232 LLDrSREqSRRERS 245
                 45534443444444 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0002      0.24      27      50 ..      38      61 ..      37      63 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
      HTH_10 27 keLAkelGIskstlsehLrkaesk 50
                +eLAk++++s+++l e +++ e k
  CTQ26450.1 38 RELAKQFDVSRPSLREAIQRLEAK 61
                69*****************99987 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00019      0.22      21      61 ..      30      70 ..      11      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
                STCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
        Rrf2 21 eeeepvsseeiaerqnispsylekilakLrkaglvksvrGk 61
                ++e+    +e+a+++++s++ l+  +++L+ +gl+  ++G 
  CTQ26450.1 30 PGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGG 70
                555556678*************************9999885 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00084         1       5      51 ..      20      68 ..      17      76 .. 0.78
   2 ?   -0.6   0.0       1.6     2e+03      15      33 ..     121     139 ..     112     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00084
      HTH_27  5 qalvLhlirhrrrrkkl.adlcgrlnvedshisyslkkLtekGLv.ert 51
                + l+L+   +++++    ++l++  +v+  +  +++ +L++kGL+  r+
  CTQ26450.1 20 EFLILEGTLRPGEKLPPeRELAKQFDVSRPSLREAIQRLEAKGLLlRRQ 68
                6677777777777777779**************************3333 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.6
      HTH_27  15 rrrrkkladlcgrlnveds 33 
                  ++r+++++l+++  + ++
  CTQ26450.1 121 DEDRDRIRELHQAIERAQQ 139
                 47999*****999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       941  (0.0524848); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1926.25
//
Query:       CTQ26451.1  [L=887]
Description: pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.1e-106  353.1   0.1     1e-105  352.4   0.1    1.4  1  PDH_E1_M         Pyruvate dehydrogenase E1 component middle d
    4.4e-16   58.7   0.0      6e-09   35.3   0.0    2.3  2  Transketolase_N  Transketolase, thiamine diphosphate binding 
  ------ inclusion threshold ------
      0.052   13.4   0.0       0.44   10.4   0.0    2.4  2  Transketolase_C  Transketolase, C-terminal domain
      0.075   13.2   0.0       0.35   11.1   0.0    2.1  1  PFO_beta_C       Pyruvate ferredoxin oxidoreductase beta subu
       0.27    8.3   0.0        0.4    7.8   0.0    1.1  1  Viral_DNA_bp     ssDNA binding protein


Domain annotation for each model (and alignments):
>> PDH_E1_M  Pyruvate dehydrogenase E1 component middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.4   0.1  2.8e-109    1e-105      18     229 .]     488     700 ..     474     700 .. 0.96

  Alignments for each domain:
  == domain 1  score: 352.4 bits;  conditional E-value: 2.8e-109
    PDH_E1_M  18 sktrevattmafvrvlkdlvkdkkigkrvvpiipdeartfgmealfrtlkiytsegqkyesvdknlilsykedkegqileegiteagavaafiaaassy 116
                  + +e++tt+afvr l+ ++k+k i +r+vpii deartfgme+lfr+++iy+++gq+y + d++++ +yked++gqil+egi+e ga a+++aaa+sy
  CTQ26451.1 488 EQNKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGASWLAAATSY 586
                 5689*********************************************************************************************** PP

    PDH_E1_M 117 dthdltllpvyvyysmfgfqrvgdliwaaadqlargflvgatagkttlageglqhqdghshllaasipavvsydpayayevavlvaeglkrmyae.ken 214
                 +t +l+++p+y+yysmfgfqr+gdl waa+dq+argfl+g+t+g+ttl+geglqh dghsh+++ +ip++ sydpayayevav++++gl rmy+e +en
  CTQ26451.1 587 STNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLVRMYGEaQEN 685
                 ***********************************************************************************************99** PP

    PDH_E1_M 215 viyyltvlnenlvqp 229
                 v+yy+t lnen+  p
  CTQ26451.1 686 VYYYITTLNENYHMP 700
                 ************876 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.7e-12     6e-09      54     214 ..     133     294 ..      79     305 .. 0.75
   2 !   21.1   0.0   3.5e-08   0.00013     213     275 ..     361     425 ..     350     458 .. 0.85

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.7e-12
                      TS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTS.TT-S...S-SS....--TTTSTT--S---STTHHHHHHHHHHHHHHHHHHHH-BTT CS
  Transketolase_N  54 dRDRfvLsnGhaslllYsllhLtGydlsledlksfrq.lgsk...tpGh....PelghtagvevttGPLGqGianavglalaektlaatynkpg 139
                      d    v  +Gh s  +Y+  +L G  l+ e++ +frq ++ k   +  h    Pe+ + ++v +  GPLG         a++++++    ++ g
       CTQ26451.1 133 DGGDLVYFQGHISPGVYARAFLEG-RLTEEQMDNFRQeVHGKglsSYPHpklmPEFWQFPTVSMGLGPLG---------AIYQAKFLKYLEHRG 216
                      444578889***************.58889999999536655211233523336899999999999**99.........566666555555555 PP

                      .B-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTEEGG..GT--S-HHHHHHHTT-EEEEET CS
  Transketolase_N 140 .fdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidGete..isftedvakrfeaygWhvieve 214
                       +d +++ +y++lgDg + e  s+ a+ +a+  kL++L+ + + n   +dG +     + ++ +  f   gW+vi+v 
       CTQ26451.1 217 lKDTSEQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTgnGKIINELEGIFGGAGWNVIKVI 294
                      26788999*******************************************9862256889**************984 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 3.5e-08
                      ETTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTST.TTTTSGGGTSS.---HHHHHHHHHHT CS
  Transketolase_N 213 vedgedveaikaaieeakaekdkPsliklrtviGygsp.akagtedvhGa.pLgedevaalkkkl 275
                      +++g+d +++ aa+++a+++k +P++i  +t+ Gyg   +++g++ +h    ++ d v+ ++ ++
       CTQ26451.1 361 NRGGHDPKKVYAALKKAQETKGQPTVILAHTIKGYGMGdTAEGKNIAHQVkKMNMDGVRYVRDRF 425
                      4699*******************************975266788888875256777888877776 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00012      0.44       9      50 ..     724     766 ..     716     772 .. 0.87
   2 ?   -0.7   0.0      0.33   1.2e+03      83     122 ..     807     847 ..     799     849 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
                      TSSEEEEEETTHHHHHHHHHHHHHTT.TTCEEEEE-SEEESHH CS
  Transketolase_C   9 gkdvtlvayGsmveealeAaeeLeke.gisaeVvdlrtvkplD 50 
                      + +v l++ Gs ++++ eAa+ L+k+ g++ +V+++ ++  l 
       CTQ26451.1 724 KGKVQLLGSGSILRHVREAAQILAKDyGVGSDVYSVTSFTELA 766
                      679******************************9999887665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.33
                      HHHHCCCTTCSSEEEEEEE-SS.SSSSGHHHHHHHTT-SHH CS
  Transketolase_C  83 alaeeafdgldapvkrvggpdv.iepgsaeelekafgldae 122
                      ++ae++ ++++a   rv g d  +++ s+e+l ++f +da 
       CTQ26451.1 807 LFAEQVRTYVPADDYRVLGTDGfGRSDSRENLRHHFEVDAS 847
                      567778889999999********************999875 PP

>> PFO_beta_C  Pyruvate ferredoxin oxidoreductase beta subunit C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.6e-05      0.35      11      42 ..     351     381 ..     349     388 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.6e-05
                 XXXXX-EEEGGGST---EEHHHHHHHHT---- CS
  PFO_beta_C  11 dwYkervykleedgyDpsdlekAlekalewgd 42 
                 dw +e++  l+  g+Dp+++ +Al+ka+e ++
  CTQ26451.1 351 DWTDEQIWALNRGGHDPKKVYAALKKAQE-TK 381
                 79999******999***************.44 PP

>> Viral_DNA_bp  ssDNA binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00011       0.4     702     760 ..     460     518 ..     446     537 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00011
                   SSSEEEEEEEEEE-TT---EE-BTTTBTTS--ECT--EEETT-EEEEEEEEEEEEES-- CS
  Viral_DNA_bp 702 kGflstkeikvvkseeaerlldldsakqgkyakvslevklarvsvevlkeirvKnRvvf 760
                   +G+l t++ k ++  e   l+d+ ++ +++  ++s+ +   r++  +lk+  +K+R v 
    CTQ26451.1 460 NGYLPTRQPKFTEKLELPTLADFSALLEEQNKEISTTIAFVRALNVMLKNKSIKDRLVP 518
                   7*******************************************************874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 6369.26
//
Query:       CTQ26452.1  [L=632]
Description: pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-79  264.6   0.0    9.5e-79  264.1   0.0    1.2  1  2-oxoacid_dh     2-oxoacid dehydrogenases acyltransferase (ca
    1.8e-66  219.9  34.2      5e-22   77.5   4.5    3.4  3  Biotin_lipoyl    Biotin-requiring enzyme
    2.1e-15   56.3   9.3     0.0055   16.5   0.0    6.3  6  Biotin_lipoyl_2  Biotin-lipoyl like
    2.5e-15   56.5   0.1    2.5e-15   56.5   0.1    2.3  2  E3_binding       e3 binding domain
    9.2e-13   48.0  13.4    0.00084   19.3   0.8    4.0  3  RnfC_N           RnfC Barrel sandwich hybrid domain
    1.3e-09   38.0  16.6     0.0082   16.0   1.5    3.5  3  GCV_H            Glycine cleavage H-protein
    2.1e-06   27.4  10.9      0.087   12.2   0.3    3.5  3  NQRA             Na(+)-translocating NADH-quinone reductase s
    8.4e-06   25.1  10.0      0.065   12.4   1.3    5.1  5  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    0.00021   21.1  11.6        4.9    6.9   0.2    6.2  6  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
    0.00034   20.2   7.2         13    5.6   0.1    6.1  6  PYNP_C           Pyrimidine nucleoside phosphorylase C-termin
     0.0014   19.3  16.7        1.1   10.0   2.2    5.7  5  HlyD_3           HlyD family secretion protein
      0.005   16.6   0.3         30    4.5   0.0    3.7  3  RNA_pol_inhib    RNA polymerase inhibitor
  ------ inclusion threshold ------
      0.062   13.0   0.0         35    4.1   0.0    3.2  3  Adeno_knob       Adenoviral fibre protein (knob domain)
      0.089   12.8   0.0       0.24   11.4   0.0    1.7  1  DUF1223          Protein of unknown function (DUF1223)
        0.6   10.7  20.5        3.8    8.0   2.0    3.8  3  DUF3597          Domain of unknown function (DUF3597)
        0.6   10.2  12.0         26    4.9   0.4    5.3  6  QRPTase_N        Quinolinate phosphoribosyl transferase, N-te
          3    7.7   5.0         20    5.0   0.2    2.4  2  GCSF             Granulocyte colony-stimulating factor


Domain annotation for each model (and alignments):
>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.1   0.0     9e-82   9.5e-79       3     232 ..     401     631 ..     399     632 .] 0.98

  Alignments for each domain:
  == domain 1  score: 264.1 bits;  conditional E-value: 9e-82
                   XXXXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHHHHHHHHHTT-.----HHHHHHHHHHHHHHH-GGGG-EE.EESEEEE--SS-- CS
  2-oxoacid_dh   3 eeervplsgirkaiakrlteskqeiphftlsdevdvtallelrkelkekeakeek.akltlldflikavalAlkefPelnasvdeeekeivvkkhvn 98 
                   e e+v+l +i+k+  ++l++ +  iph+t++d+ d+t+l ++rk+ +++++k++  +k t + f++kava+Al+++P +n+s++e+ +++++kk++n
    CTQ26452.1 401 EVEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITDLEAFRKQQNAEAEKRKLdVKFTPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYIN 497
                   6799********************************************99988889***************************************** PP

                   EEEE--------EEEE--GGG--HHHHHHHHHHHHHHHTTT---GGGTSS-SEEEE---------------TT-SEEEEE---.B--TTSTT-HT-- CS
  2-oxoacid_dh  99 iGvAvatprGLlvPviknadkkslleiakelkelaekaregklkpedleggtftisNlGmlGvtsftPiinppqvaIlgvgrikerpvvkegelvvr 195
                   iGvAv+tp+GL+vPv k+++kks+ e+++el+++++kar+gkl++ +++gg+ftis++G+lG+t+f Pi+n p+vaIlgv++   +pv++ +e+v+r
    CTQ26452.1 498 IGVAVDTPNGLVVPVFKDVNKKSITELSRELTTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSKSAMEPVWNGKEFVPR 594
                   ************************************************************************************************* PP

                   -EEEEEEEEETTT--HHHHHHHHHHHHHTT-HHXXXX CS
  2-oxoacid_dh 196 kvmtlslsaDHRvidGaeaarFlntlkkllenpeell 232
                    ++++sls+DHRvidGa++arF++ +++ l+++ +l+
    CTQ26452.1 595 LMLPISLSFDHRVIDGADGARFITIINNTLSDIRRLV 631
                   ********************************99986 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   7.5   4.9e-25   5.2e-22       2      72 ..       4      73 ..       3      74 .. 0.97
   2 !   77.5   4.5   4.8e-25     5e-22       1      72 [.     107     177 ..     107     178 .. 0.97
   3 !   77.2   6.3   5.9e-25   6.2e-22       2      72 ..     208     277 ..     207     278 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 4.9e-25
                   EEEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl  2 eiksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 72
                   eik+P+iG +  e ++e+lvkvGdkV+a+q+l++ve +K++me+++p+aGvvkei+v++Gd+ e+g+l+++
     CTQ26452.1  4 EIKVPDIGADEVE-ITEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVSVGDKTETGKLIMI 73
                   79********998.*******************************************************97 PP

  == domain 2  score: 77.5 bits;  conditional E-value: 4.8e-25
                    TEEEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl   1 keiksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 72 
                    ke+ +P+iG +  e v+e++vkvGd+++a+q+l++ve +K++me++ap aG+vkei+++ Gd+v++g+l+++
     CTQ26452.1 107 KEVHVPDIGGDEVE-VTEIMVKVGDTIAAEQSLITVEGDKASMEVPAPFAGTVKEIKINTGDKVSTGSLIMI 177
                    5899******9998.*******************************************************97 PP

  == domain 3  score: 77.2 bits;  conditional E-value: 5.9e-25
                    EEEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl   2 eiksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 72 
                    ++++P+iG +  e v+ev+vkvGdkV+a+q+l++ve +K++me++ap aG+vkei+++ Gd+v++g+l+++
     CTQ26452.1 208 DVNVPDIGGDEVE-VTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGTVKEIKISTGDKVKTGSLIMV 277
                    799******9998.*******************************************************97 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.2    0.0072       7.6      13      33 ..      17      37 ..      16      41 .. 0.88
   2 !   14.8   0.0   1.7e-05     0.018       5      47 ..      46      88 ..      42      91 .. 0.89
   3 ?    0.5   0.1      0.53   5.6e+02      13      32 ..     121     140 ..     120     145 .. 0.68
   4 !   13.4   0.0   4.9e-05     0.052       5      35 ..     150     180 ..     146     195 .. 0.83
   5 ?    3.5   0.4     0.058        61      13      33 ..     221     241 ..     218     245 .. 0.88
   6 !   16.5   0.0   5.2e-06    0.0055       5      36 ..     250     281 ..     246     295 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0072
  Biotin_lipoyl_2 13 VaqlnVkdGqrVkaGdvLael 33
                     +++++Vk G+ V+a + L++ 
       CTQ26452.1 17 ITEILVKVGDKVEAEQSLITV 37
                     89************9999886 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.7e-05
  Biotin_lipoyl_2  5 IaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaea 47
                     + +p++G+V+++ V  G+  ++G ++++ Ds + ++a a a++
       CTQ26452.1 46 VPSPQAGVVKEIKVSVGDKTETGKLIMIFDSAEGAAAAAPAQE 88
                     6799***************************998888777665 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.53
  Biotin_lipoyl_2  13 VaqlnVkdGqrVkaGdvLae 32 
                      V+++ Vk G+ + a + L++
       CTQ26452.1 121 VTEIMVKVGDTIAAEQSLIT 140
                      67777777777766666655 PP

  == domain 4  score: 13.4 bits;  conditional E-value: 4.9e-05
  Biotin_lipoyl_2   5 IaapvsGrVaqlnVkdGqrVkaGdvLaelDs 35 
                      + ap++G+V+++ +  G+ V +G ++++ + 
       CTQ26452.1 150 VPAPFAGTVKEIKINTGDKVSTGSLIMIFEV 180
                      6799**********************99765 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.058
  Biotin_lipoyl_2  13 VaqlnVkdGqrVkaGdvLael 33 
                      V+++ Vk G+ V a + L++ 
       CTQ26452.1 221 VTEVMVKVGDKVAAEQSLITV 241
                      99***********99988876 PP

  == domain 6  score: 16.5 bits;  conditional E-value: 5.2e-06
  Biotin_lipoyl_2   5 IaapvsGrVaqlnVkdGqrVkaGdvLaelDsr 36 
                      + ap++G+V+++ +  G+ Vk+G ++++ + +
       CTQ26452.1 250 VPAPFAGTVKEIKISTGDKVKTGSLIMVFEVE 281
                      6799**********************987665 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   1.0       8.9   9.4e+03       3      14 ..      98     109 ..      97     114 .. 0.83
   2 !   56.5   0.1   2.4e-18   2.5e-15       1      36 []     328     363 ..     328     363 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8.9
                 E-HHHHHHHHHC CS
  E3_binding   3 AsPaaRklAkel 14 
                 A Paa   Ake 
  CTQ26452.1  98 AAPAAAAAAKEV 109
                 78*******995 PP

  == domain 2  score: 56.5 bits;  conditional E-value: 2.4e-18
                 SBE-HHHHHHHHHCT--TTTS---CTTTBE-HHHHC CS
  E3_binding   1 vlAsPaaRklAkelGidLsdvkGtGpgGRItkeDVl 36 
                 v+A+P+ R+lA+e G++L++vkGtG++GRI++eDV+
  CTQ26452.1 328 VHATPLIRRLAREFGVNLAKVKGTGRKGRILREDVQ 363
                 79*********************************6 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.6   2.4e-06    0.0025      42      93 ..      18      70 ..      11      78 .. 0.83
   2 !   17.6   0.6   2.6e-06    0.0027      41      91 ..     121     172 ..      87     181 .. 0.81
   3 !   19.3   0.8     8e-07   0.00084      42      87 ..     222     268 ..     218     283 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.4e-06
      RnfC_N 42 akplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrlvahgsgvea 93
                +++lvkvgdkV+  q + + eg   s++v ++ +G Vk+i+  +  ++++ + 
  CTQ26452.1 18 TEILVKVGDKVEAEQSLITVEGdKASMEVPSPQAGVVKEIKVSVGDKTETGKL 70
                689************9887777688***************9877666655555 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.6e-06
      RnfC_N  41 pakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrlvahgsgv 91 
                  ++++vkvgd++   q + + eg   s++v a+ +GtVk+i+  +  + s+ 
  CTQ26452.1 121 VTEIMVKVGDTIAAEQSLITVEGdKASMEVPAPFAGTVKEIKINTGDKVSTG 172
                 4789************9877777688***************98877666655 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 8e-07
      RnfC_N  42 akplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrlvah 87 
                 ++++vkvgdkV   q + + eg   s++v a+ +GtVk+i+  +  +
  CTQ26452.1 222 TEVMVKVGDKVAAEQSLITVEGdKASMEVPAPFAGTVKEIKISTGDK 268
                 6899***********9877777688***************9776554 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.6   1.8e-05     0.018      38      82 ..      21      65 ..       7      68 .. 0.89
   2 !   15.6   0.5   1.1e-05     0.011      39      75 ..     126     162 ..     110     170 .. 0.87
   3 !   16.0   1.5   7.8e-06    0.0082      38      74 ..     225     261 ..     202     270 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.8e-05
                ---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE-GGGTT-T CS
       GCV_H 38 lpevgtkvkkgeslaavEsvKaasevyapvsGevvevNekleeep 82
                l +vg+kv++++sl +vE  Ka  ev++p  G v e+   + ++ 
  CTQ26452.1 21 LVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVSVGDKT 65
                4579********************************999888776 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.1e-05
                 --TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE- CS
       GCV_H  39 pevgtkvkkgeslaavEsvKaasevyapvsGevvevN 75 
                  +vg+++++++sl +vE  Ka  ev+ap+ G+v e+ 
  CTQ26452.1 126 VKVGDTIAAEQSLITVEGDKASMEVPAPFAGTVKEIK 162
                 479******************************9975 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 7.8e-06
                 ---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE CS
       GCV_H  38 lpevgtkvkkgeslaavEsvKaasevyapvsGevvev 74 
                 + +vg+kv++++sl +vE  Ka  ev+ap+ G+v e+
  CTQ26452.1 225 MVKVGDKVAAEQSLITVEGDKASMEVPAPFAGTVKEI 261
                 3479******************************997 PP

>> NQRA  Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.7   0.00016      0.17      42      93 ..      19      73 ..      13     100 .. 0.74
   2 !    9.2   0.3   0.00072      0.76      42      80 ..     123     162 ..      96     179 .. 0.79
   3 !   12.2   0.3   8.3e-05     0.087      42      86 ..     223     270 ..     196     294 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00016
        NQRA 42 klkvkegdkVkkGqvlfe.dKknpgvlftspasGevvein..rGekRvlqsvvie 93
                +++vk+gdkV++ q l++ + ++ ++ + sp +G+v+ei+   G+k    ++++ 
  CTQ26452.1 19 EILVKVGDKVEAEQSLITvEGDKASMEVPSPQAGVVKEIKvsVGDKTETGKLIMI 73
                589**********999862567788999*********997224776665555555 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00072
        NQRA  42 klkvkegdkVkkGqvlfe.dKknpgvlftspasGevvein 80 
                 +++vk+gd++ + q l++ + ++ ++ + +p +G+v+ei+
  CTQ26452.1 123 EIMVKVGDTIAAEQSLITvEGDKASMEVPAPFAGTVKEIK 162
                 578*********99988625677889999*******9975 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 8.3e-05
        NQRA  42 klkvkegdkVkkGqvlfe.dKknpgvlftspasGevvein..rGekRv 86 
                 +++vk+gdkV + q l++ + ++ ++ + +p +G+v+ei+   G+k +
  CTQ26452.1 223 EVMVKVGDKVAAEQSLITvEGDKASMEVPAPFAGTVKEIKisTGDKVK 270
                 689**********9998625677889999********98622566655 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.36   3.8e+02      30      52 ..      17      38 ..      14      44 .. 0.79
   2 !    7.0   0.1    0.0028       2.9     107     137 ..      42      72 ..      29      78 .. 0.86
   3 !   12.4   1.3   6.2e-05     0.065      26     137 ..      50     176 ..      45     185 .. 0.72
   4 ?    0.6   0.1      0.26   2.8e+02      30      52 ..     221     242 ..     218     246 .. 0.68
   5 !    8.7   0.0   0.00085       0.9     107     137 ..     246     276 ..     242     282 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.36
                XXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 30 veklyvnatgdkVkkGqpLaely 52
                ++++ v+ +gdkV++ q L++++
  CTQ26452.1 17 ITEILVK-VGDKVEAEQSLITVE 38
                6677777.899999999998886 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0028
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 107 ktvtvkapisGvVteknvreGqyvqpgdtlf 137
                  +++v +p++GvV e +v  G+  ++g+ ++
  CTQ26452.1  42 ASMEVPSPQAGVVKEIKVSVGDKTETGKLIM 72 
                 67999*****************999998654 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 6.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  26 veGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalkakkklkkke.................lleaarerLrllgvseeqiaelektgkvqk 107
                  +G v++++v+ +gdk + G+ ++  +s e +aa +   + +k++  ++++                  ++e  +   ++ + + ++ ++l   +  + 
  CTQ26452.1  50 QAGVVKEIKVS-VGDKTETGKLIMIFDSAEGAAAAAPAQEEKKEAAPAAAAPaaaaaakevhvpdiggdEVEVTEIMVKVGD-TIAAEQSLITVEGDKA 146
                 57999999999.9999999999999999999888887777777555555554666677778888787754444443333333.3333355666666678 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 108 tvtvkapisGvVteknvreGqyvqpgdtlf 137
                 +++v ap++G+V e ++++G+ v++g+ ++
  CTQ26452.1 147 SMEVPAPFAGTVKEIKINTGDKVSTGSLIM 176
                 89***********************98643 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.26
                 XXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  30 veklyvnatgdkVkkGqpLaely 52 
                 v+++ v+ +gdkV++ q L++++
  CTQ26452.1 221 VTEVMVK-VGDKVAAEQSLITVE 242
                 5566666.777777777777664 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.00085
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 107 ktvtvkapisGvVteknvreGqyvqpgdtlf 137
                  +++v ap++G+V e ++ +G+ v++g+ ++
  CTQ26452.1 246 ASMEVPAPFAGTVKEIKISTGDKVKTGSLIM 276
                 5789999999999999999999999998665 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.2    0.0046       4.9      76     111 ..      14      45 ..       7      56 .. 0.76
   2 ?    1.6   0.0       0.2   2.1e+02      85     107 ..      56      78 ..      50      87 .. 0.85
   3 ?    2.8   0.1     0.088        93      83     107 ..     121     145 ..     108     151 .. 0.83
   4 ?    2.3   0.0      0.12   1.3e+02      81     106 ..     156     181 ..     144     191 .. 0.81
   5 ?    5.3   0.2     0.015        16      82     107 ..     220     245 ..     205     253 .. 0.83
   6 ?    4.0   0.0     0.038        40      81     106 ..     256     281 ..     252     291 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0046
                 TTTTTTTTEEES----SEE-SEEEEEEE-HHHHGGG CS
  PTS_EIIA_1  76 tvklkgegFellvkegdkVkagdklvevdleaikka 111
                  v++     e+lvk gdkV+a + l++v+ ++ + +
  CTQ26452.1  14 EVEI----TEILVKVGDKVEAEQSLITVEGDKASME 45 
                 5544....469****************998876655 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.2
                 EES----SEE-SEEEEEEE-HHH CS
  PTS_EIIA_1  85 ellvkegdkVkagdklvevdlea 107
                 e++v+ gdk ++g++++ +d ++
  CTQ26452.1  56 EIKVSVGDKTETGKLIMIFDSAE 78 
                 7899****************876 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.088
                 TEEES----SEE-SEEEEEEE-HHH CS
  PTS_EIIA_1  83 gFellvkegdkVkagdklvevdlea 107
                 + e++vk gd++ a + l++v+ ++
  CTQ26452.1 121 VTEIMVKVGDTIAAEQSLITVEGDK 145
                 45799**************998665 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.12
                 TTTEEES----SEE-SEEEEEEE-HH CS
  PTS_EIIA_1  81 gegFellvkegdkVkagdklvevdle 106
                 g++ e+++++gdkV++g++++ ++++
  CTQ26452.1 156 GTVKEIKINTGDKVSTGSLIMIFEVA 181
                 55567889999999999999988765 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.015
                 TTEEES----SEE-SEEEEEEE-HHH CS
  PTS_EIIA_1  82 egFellvkegdkVkagdklvevdlea 107
                 e+ e++vk gdkV a + l++v+ ++
  CTQ26452.1 220 EVTEVMVKVGDKVAAEQSLITVEGDK 245
                 456799***************98665 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.038
                 TTTEEES----SEE-SEEEEEEE-HH CS
  PTS_EIIA_1  81 gegFellvkegdkVkagdklvevdle 106
                 g++ e+++++gdkVk+g++++ +++e
  CTQ26452.1 256 GTVKEIKISTGDKVKTGSLIMVFEVE 281
                 55668899*************99987 PP

>> PYNP_C  Pyrimidine nucleoside phosphorylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.012        13      36      53 ..      20      37 ..      18      46 .. 0.87
   2 ?    2.3   0.1      0.13   1.4e+02      30      59 ..      49      79 ..      45      93 .. 0.69
   3 ?    1.7   0.0       0.2   2.1e+02      36      53 ..     124     141 ..     122     150 .. 0.87
   4 ?    0.9   0.0      0.34   3.6e+02      37      51 ..     162     176 ..     155     194 .. 0.81
   5 ?    4.7   0.0     0.023        24      36      53 ..     224     241 ..     222     252 .. 0.88
   6 ?    2.4   0.0      0.12   1.3e+02      37      52 ..     262     277 ..     254     294 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.012
                ES--TT-EEBTTSEEEEE CS
      PYNP_C 36 lhkklGdkVkkGeplati 53
                + +k+GdkV++++ l+t+
  CTQ26452.1 20 ILVKVGDKVEAEQSLITV 37
                679************998 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.13
                TT-EEEES--..TT-EEBTTSEEEEEEESSSC CS
      PYNP_C 30 lavGielhkk..lGdkVkkGeplatiYankee 59
                +++G++ ++k  +Gdk ++G+ ++ i+ + e 
  CTQ26452.1 49 PQAGVVKEIKvsVGDKTETGKLIM-IFDSAEG 79
                5788865544228*******9876.6666666 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.2
                 ES--TT-EEBTTSEEEEE CS
      PYNP_C  36 lhkklGdkVkkGeplati 53 
                 +++k+Gd + +++ l+t+
  CTQ26452.1 124 IMVKVGDTIAAEQSLITV 141
                 789************998 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.34
                 S--TT-EEBTTSEEE CS
      PYNP_C  37 hkklGdkVkkGepla 51 
                 ++ +GdkV++G  ++
  CTQ26452.1 162 KINTGDKVSTGSLIM 176
                 5679*******9887 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.023
                 ES--TT-EEBTTSEEEEE CS
      PYNP_C  36 lhkklGdkVkkGeplati 53 
                 +++k+GdkV +++ l+t+
  CTQ26452.1 224 VMVKVGDKVAAEQSLITV 241
                 789************998 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.12
                 S--TT-EEBTTSEEEE CS
      PYNP_C  37 hkklGdkVkkGeplat 52 
                 ++ +GdkVk+G  +++
  CTQ26452.1 262 KISTGDKVKTGSLIMV 277
                 5678*******99885 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.8      0.45   4.7e+02       9      51 ..      16      55 ..      14      61 .. 0.73
   2 ?    3.8   0.1     0.088        92       3      28 ..      47      72 ..      45      85 .. 0.87
   3 ?    2.6   0.1      0.21   2.2e+02       9      35 ..     120     147 ..     118     152 .. 0.82
   4 !   10.0   2.2    0.0011       1.1       2      49 ..     150     201 ..     149     251 .. 0.70
   5 !    8.4   0.1    0.0033       3.4       2      32 ..     250     282 ..     249     310 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.45
      HlyD_3  9 vvvelnveegevvqagdelleiippdtllveakvpaadlgsik 51
                +++e+ v++g+ v+a + l ++  ++   +  +vp+ ++g +k
  CTQ26452.1 16 EITEILVKVGDKVEAEQSLITVEGDK---ASMEVPSPQAGVVK 55
                68899999999999999999999653...46666666666654 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.088
      HlyD_3  3 rApvdGvvvelnveegevvqagdell 28
                 +p +Gvv+e++v++g+  + g+ ++
  CTQ26452.1 47 PSPQAGVVKEIKVSVGDKTETGKLIM 72
                59***************999888765 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.21
      HlyD_3   9 vvvelnveegevvqagdelleiipp.dt 35 
                 +v+e+ v++g+ ++a + l ++  + ++
  CTQ26452.1 120 EVTEIMVKVGDTIAAEQSLITVEGDkAS 147
                 6999*****************9876344 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.0011
      HlyD_3   2 lrApvdGvvvelnveegevvqagde..lleiip..pdtllveakvpaadlgs 49 
                 + Ap++G+v+e++++ g+ v+ g    ++e++   p+ + ++a+ paa+++ 
  CTQ26452.1 150 VPAPFAGTVKEIKINTGDKVSTGSLimIFEVAGaaPAAAPAQAAAPAAAAPA 201
                 569*********************9888999985544555555555555554 PP

  == domain 5  score: 8.4 bits;  conditional E-value: 0.0033
      HlyD_3   2 lrApvdGvvvelnveegevvqagde..lleiip 32 
                 + Ap++G+v+e++++ g+ v  g    ++e+  
  CTQ26452.1 250 VPAPFAGTVKEIKISTGDKVKTGSLimVFEVEG 282
                 569********************9955555554 PP

>> RNA_pol_inhib  RNA polymerase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.091        95       5      17 ..      35      47 ..      33      48 .. 0.93
   2 ?    4.5   0.0     0.028        30       5      22 ..     139     157 ..     137     161 .. 0.80
   3 ?    4.5   0.0     0.028        30       5      22 ..     239     257 ..     237     261 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.091
  RNA_pol_inhib  5 vtvegseesfEVP 17
                   +tveg ++s+EVP
     CTQ26452.1 35 ITVEGDKASMEVP 47
                   79**********9 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.028
  RNA_pol_inhib   5 vtvegseesfEVPv.yAes 22 
                    +tveg ++s+EVP  +A +
     CTQ26452.1 139 ITVEGDKASMEVPApFAGT 157
                    79***********656665 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.028
  RNA_pol_inhib   5 vtvegseesfEVPv.yAes 22 
                    +tveg ++s+EVP  +A +
     CTQ26452.1 239 ITVEGDKASMEVPApFAGT 257
                    79***********656665 PP

>> Adeno_knob  Adenoviral fibre protein (knob domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.058        61      18      49 ..      14      45 ..       9      59 .. 0.89
   2 ?    1.0   0.0      0.29   3.1e+02      18      49 ..     118     149 ..     110     165 .. 0.85
   3 ?    4.1   0.0     0.033        35      18      49 ..     218     249 ..     210     265 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.058
                -EEEEEEEEEETTEEEEEEEEEESSS-GGGGH CS
  Adeno_knob 18 dckftlvltkcgsqvlatvaalavsgdlssmt 49
                ++ +t +l k+g +v a  + ++v gd +sm 
  CTQ26452.1 14 EVEITEILVKVGDKVEAEQSLITVEGDKASME 45
                567899************************96 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.29
                 -EEEEEEEEEETTEEEEEEEEEESSS-GGGGH CS
  Adeno_knob  18 dckftlvltkcgsqvlatvaalavsgdlssmt 49 
                 ++ +t ++ k+g  + a  + ++v gd +sm 
  CTQ26452.1 118 EVEVTEIMVKVGDTIAAEQSLITVEGDKASME 149
                 56789999**********************95 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.033
                 -EEEEEEEEEETTEEEEEEEEEESSS-GGGGH CS
  Adeno_knob  18 dckftlvltkcgsqvlatvaalavsgdlssmt 49 
                 ++ +t v+ k+g +v a  + ++v gd +sm 
  CTQ26452.1 218 EVEVTEVMVKVGDKVAAEQSLITVEGDKASME 249
                 567899************************95 PP

>> DUF1223  Protein of unknown function (DUF1223)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00023      0.24      32     156 ..     423     547 ..     409     555 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00023
                 EEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEEEETT-HHHHHHHHHHHHHTT-.S--S-EEEEE-SS.SEEEEE---S.. CS
     DUF1223  32 aLalhVdYwdylGWkDtfassefterQrayaealglrsvYTPqvvvnGreevvgsdeeeleaaisaaaaaaa.aakvkvklsregdetlevsveaaaas 129
                 ++  hV+ +d+   +D    ++f ++Q+a ae+++l+  +TP v++     +  ++  ++++ +s+  ++ + ++ +++ ++ ++ + l v v ++ ++
  CTQ26452.1 423 VMIPHVTHFDK---TDITDLEAFRKQQNAEAEKRKLDVKFTPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTlKKYINIGVAVDTPNGLVVPVFKDVNK 518
                 56679999999...7888899*************************99999999999999999988777665566666666655555666666666554 PP

                 ...S-EEEEEEEEEEEE.EEE-------- CS
     DUF1223 130 ee.keadvllvlvekee.evkvkrGeNag 156
                 ++  e +  l +++k++ + k ++Ge +g
  CTQ26452.1 519 KSiTELSRELTTISKKArDGKLTAGEMQG 547
                 33344443343333333366666666655 PP

>> DUF3597  Domain of unknown function (DUF3597)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.0    0.0036       3.8      11      56 ..      75     125 ..      68     137 .. 0.55
   2 ?    5.1   1.1      0.03        32      14      56 ..     183     225 ..     173     238 .. 0.48
   3 ?    7.2   2.9    0.0069       7.2      14      48 ..     283     319 ..     273     346 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0036
                 --..-SS-TTTT-------SS---S..---------SS...........EE-HHHH CS
     DUF3597  11 gkaaaaaaapaasaapaataaaaaa.aaaaPaaaaaaaaa.........vdveavl 56 
                  +a     + aa+aapa++++++aa aaaaPaaaaaa++          v+v++++
  CTQ26452.1  75 DSA-----EGAAAAAPAQEEKKEAApAAAAPAAAAAAKEVhvpdiggdeVEVTEIM 125
                 442.....223333344433333333567777777766544555566666666655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.03
                 .-SS-TTTT-------SS---S.---------SS...........EE-HHHH CS
     DUF3597  14 aaaaaapaasaapaataaaaaaaaaaPaaaaaaaaa.........vdveavl 56 
                 aa aaapa++aap         aaaaPaaaa  +           v+v++v+
  CTQ26452.1 183 AAPAAAPAQAAAP---------AAAAPAAAAGVKDVnvpdiggdeVEVTEVM 225
                 2333333333334.........444555444433323333334445555555 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0069
                 .-SS-TTTT-----..--SS---S.---------SS. CS
     DUF3597  14 aaaaaapaasaapa..ataaaaaaaaaaPaaaaaaaa 48 
                 aa aaapa++aapa  a++a+aa++aaaPaa+a+ ++
  CTQ26452.1 283 AAPAAAPAQAAAPApaAAPAQAAKPAAAPAAKAEGKS 319
                 3444555555444400444444557777777766544 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.054        57      49      70 ..      18      40 ..       7      44 .. 0.84
   2 ?    4.9   0.4     0.025        26      25      71 ..      91     145 ..      78     149 .. 0.82
   3 ?   -1.9   0.0       3.4   3.6e+03      49      68 ..     160     179 ..     155     185 .. 0.82
   4 ?    4.3   0.2     0.038        40      44      71 ..     217     245 ..     188     249 .. 0.79
   5 ?   -0.5   0.0       1.2   1.3e+03      49      68 ..     260     279 ..     254     286 .. 0.79
   6 ?   -1.6   0.0       2.8     3e+03       4      58 ..     434     490 ..     432     496 .. 0.57

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.054
                E.ESS-TT-EEETTEEEEEEEEE CS
   QRPTase_N 49 e.llvkDGervekgdvlleieGn 70
                + +lvk G++ve+++ l+++eG+
  CTQ26452.1 18 TeILVKVGDKVEAEQSLITVEGD 40
                4489999***************8 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.025
                 SSSEEE-SHHHHHHHHHHH.......TTTEEE.ESS-TT-EEETTEEEEEEEEEH CS
   QRPTase_N  25 keegvvaGlevaeevfell.......pgleve.llvkDGervekgdvlleieGna 71 
                 ke++  a  ++a++  + +       +++ev+ ++vk G+++++++ l+++eG+ 
  CTQ26452.1  91 KEAAPAAAAPAAAAAAKEVhvpdiggDEVEVTeIMVKVGDTIAAEQSLITVEGDK 145
                 677777778888888888888888888888878********************85 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.4
                 EESS-TT-EEETTEEEEEEE CS
   QRPTase_N  49 ellvkDGervekgdvlleie 68 
                 e++++ G++v+ g  ++ +e
  CTQ26452.1 160 EIKINTGDKVSTGSLIMIFE 179
                 578899*******9998765 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.038
                 TTTEEE.ESS-TT-EEETTEEEEEEEEEH CS
   QRPTase_N  44 pgleve.llvkDGervekgdvlleieGna 71 
                 +++ev+ ++vk G++v++++ l+++eG+ 
  CTQ26452.1 217 DEVEVTeVMVKVGDKVAAEQSLITVEGDK 245
                 566666699******************85 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 1.2
                 EESS-TT-EEETTEEEEEEE CS
   QRPTase_N  49 ellvkDGervekgdvlleie 68 
                 e++++ G++v+ g  ++ +e
  CTQ26452.1 260 EIKISTGDKVKTGSLIMVFE 279
                 578999********998654 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 2.8
                 --HHHHHHGCTTSEEEEE...EEESSSEEE-SHHHHHHHHHHHTTTEEEESS-TT-EE CS
   QRPTase_N   4 gDlttealipeekkakae...iiakeegvvaGlevaeevfellpglevellvkDGerv 58 
                  D+t  + + ++++a+ae   +  k   vv  ++++++ +e++p ++ +l  +DG+r+
  CTQ26452.1 434 TDITDLEAFRKQQNAEAEkrkLDVKFTPVVFIMKAVAAALEQMPRFNSSLS-EDGQRL 490
                 577777777777777764111444444455555566666666655555444.666665 PP

>> GCSF  Granulocyte colony-stimulating factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2     0.019        20      98     122 ..     175     199 ..     143     210 .. 0.72
   2 ?    4.1   0.8     0.037        39     100     124 ..     277     301 ..     247     315 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.019
                 HHHHHHCT-S-SS--SSS--S---S CS
        GCSF  98 wqqmeelgvapavqptqgampafts 122
                  + +e  g+apa  p+q+a pa ++
  CTQ26452.1 175 IMIFEVAGAAPAAAPAQAAAPAAAA 199
                 4456889**************9764 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.037
                 HHHHCT-S-SS--SSS--S---SHH CS
        GCSF 100 qmeelgvapavqptqgampaftsaf 124
                  +e  g+apa  p+q+a pa ++a 
  CTQ26452.1 277 VFEVEGAAPAAAPAQAAAPAPAAAP 301
                 457779*************988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 4577.07
//
Query:       CTQ26453.1  [L=474]
Description: lipoamide dehydrogenase, E3 component is part of three enzyme complexes [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-61  208.7   5.1    1.4e-61  208.3   5.1    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    4.4e-36  123.5   0.1    1.2e-35  122.0   0.1    1.8  1  Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase,
    1.2e-17   64.3   5.1    6.1e-15   55.6   1.0    3.2  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    2.1e-09   37.1   3.2    4.2e-05   22.9   0.6    3.0  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    3.9e-08   33.1   0.3    7.7e-08   32.1   0.3    1.5  1  FAD_oxidored   FAD dependent oxidoreductase
    4.1e-08   32.7   1.2    2.3e-07   30.3   0.8    2.2  2  GIDA           Glucose inhibited division protein A
    6.4e-06   25.5   1.1    9.4e-05   21.7   0.3    2.6  2  FAD_binding_2  FAD binding domain
    1.5e-05   23.9   0.6     0.0026   16.5   0.1    2.3  2  HI0933_like    HI0933-like protein
    4.7e-05   22.8   2.8       0.22   10.8   0.1    3.2  3  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    6.8e-05   22.2   0.1    0.00015   21.1   0.1    1.6  1  Thi4           Thi4 family
    0.00017   21.0   0.4    0.00047   19.5   0.1    1.8  2  FAD_binding_3  FAD binding domain
    0.00027   21.1   4.5     0.0012   19.0   0.3    3.0  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.068   13.1   2.3          6    6.7   0.2    2.4  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
        0.2   10.6   0.3       0.78    8.7   0.1    1.9  2  Lycopene_cycl  Lycopene cyclase protein
        7.8    6.0  11.4       0.49    9.9   0.9    3.2  4  DAO            FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.3   5.1   1.2e-64   1.4e-61       2     294 .]       8     328 ..       7     328 .. 0.93

  Alignments for each domain:
  == domain 1  score: 208.3 bits;  conditional E-value: 1.2e-64
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH........................HHHHCHHHHCCCCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias........................evvkklnqgielll 71 
                  +vvv+G+GpAG++aa + a  g+++++ve    l+g cln+gc++skall+va+  e+a+                        +v+++l+ g+  ++
   CTQ26453.1   8 QVVVLGAGPAGYSAAFRCADLGLETVIVErystLGGVCLNVGCIPSKALLHVAKVIEEAKalaehgivfgepktdidkirtwkeKVITQLTGGLAGMA 105
                  8***************************99999***************************************************************** PP

                  CCTCEEEEESCEEEEETEEEC....TCEEEEEESEEEE---EEE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  72 geevvkidpgkkkvklekkke....gdeekiaydklvlAtGssprdl.gipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalakl 164
                  +  +vk+ +g +k++  ++ e    + ++ i +d+ ++A Gs+p  l  ip +        r +ds++al+lk +pkr++v GgG iG+E+  +++ l
   CTQ26453.1 106 KGRKVKVVNGLGKFTGANTLEvegeNGKTVINFDNAIIAAGSRPIQLpFIPHE------DPRVWDSTDALELKSVPKRMLVMGGGIIGLEMGTVYHAL 197
                  *99*************999999998777899***************9778877......3478*********************************** PP

                  T-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCE.....EEESEEEE-S-EEES-HHCS.HCCT-EEEETT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2 165 gkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgee.....idadlvvvavGvrpstelle.eklglelderg 256
                  g+e+ +ve  d++ +a dk++ +  ++++ k+  +++l+t+v++++++++ + +v  +g++       +d v+va+G+ p+ + l+  k+g+e+d+rg
   CTQ26453.1 198 GSEIDVVEMFDQVIPAADKDVVKVFTKRISKK-FNLMLETKVTAVEAKEDGI-YVSMEGKKapaeaQRYDAVLVAIGRVPNGKNLDaGKAGVEVDDRG 293
                  ******************************96.6677777777777666633.55555555577889******************************* PP

                  EEE--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 257 givvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  +i vd+++rtnvp+i+aiGD++   g+p+la++ v +G
   CTQ26453.1 294 FIRVDKQMRTNVPHIFAIGDIV---GQPMLAHKGVHEG 328
                  **********************...********99887 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.1     1e-38   1.2e-35       1     109 [.     347     455 ..     347     456 .. 0.98

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 1e-38
                    BEEEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTSB CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladti 96 
                    ip++++t+peva+vGlte+eAk++gi +++++fp++a+gra+a++ ++g++Kl++d++t++v+G  ivG + gel+ e+ +ai++g+ +ed+a ti
     CTQ26453.1 347 IPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKETHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTI 442
                    79********************************************************************************************** PP

                    SSSSSTGGGGHCH CS
  Pyr_redox_dim  97 hihPtlsealkea 109
                    h+hPtl+e++  a
     CTQ26453.1 443 HAHPTLHESVGLA 455
                    ********98766 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.2    0.0019       2.2       2      35 ..       9      42 ..       8      45 .. 0.93
   2 !   55.6   1.0   5.1e-18   6.1e-15       1      76 [.     177     250 ..     177     256 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0019
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                vvv+G+G  g  +A   a+lg ++ +ver ++l 
  CTQ26453.1  9 VVVLGAGPAGYSAAFRCADLGLETVIVERYSTLG 42
                8****************************88775 PP

  == domain 2  score: 55.6 bits;  conditional E-value: 5.1e-18
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedg.vesv 76 
                 +++v+GgG iglE+++++++lg+++ vve+ d++ ++ D+++ k+++++++k+  +++l+tkv+++e +edg    v
  CTQ26453.1 177 RMLVMGGGIIGLEMGTVYHALGSEIDVVEMFDQVIPAADKDVVKVFTKRISKK-FNLMLETKVTAVEAKEDGiY--V 250
                 689*************************************************9.*****************933..3 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   2.9e-05     0.034       1      30 [.      10      38 ..      10      44 .. 0.89
   2 !   22.9   0.6   3.5e-08   4.2e-05     121     305 .]     134     312 ..     109     312 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.9e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 ++ GaGPaG +aa  + ++gle  +i+E+ 
   CTQ26453.1 10 VVLGAGPAGYSAAFRCADLGLE-TVIVERY 38
                 689******************5.78***86 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 3.5e-08
  Pyr_redox_3 121 etyeAkkviiAtGefdkPnkln.ipGeeklvkhyskvk.efhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdien 216
                   +++ ++ iiA+G   +P +l  ip e+   +  s++  e+ k   ++++V Gg+  + ++ +   + g+e+ vv   +++       +  +  +  +
   CTQ26453.1 134 TVINFDNAIIAAGS--RPIQLPfIPHED-PRVWDSTDAlEL-KSVPKRMLVMGGGIIGLEMGTVYHALGSEIDVVEMFDQVIPAA---DKDVVKVFTK 224
                  46777888999998..665555156666.444444444155.6668999************************998876444332...2223334444 PP

  Pyr_redox_3 217 rleelvkeekikvlfnaevkeikekeeeykvktedgk...kvevkddvvlatGykpdlsflkk..slfeldedgrpvlteeteetnvpglflaG 305
                  r+      +k++++ +++v++++ ke  + v++e +k   + + +d v++a+G  p+ + l++  +++e d+ g++ +++ ++ tnvp +f +G
   CTQ26453.1 225 RIS-----KKFNLMLETKVTAVEAKEDGIYVSMEGKKapaEAQRYDAVLVAIGRVPNGKNLDAgkAGVEVDDRGFIRVDK-QMRTNVPHIFAIG 312
                  443.....35789999999999999999999866543111455599999*************998999999999999986.699*******999 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.3   6.4e-11   7.7e-08       1      38 [.       8      45 ..       8      65 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 6.4e-11
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGll 38
                  +vvV G+gpaG+ AA  +a  G ++++ve++  lGG  
    CTQ26453.1  8 QVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGVC 45
                  59**********************************86 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.8   1.9e-10   2.3e-07       1      60 [.       8      70 ..       8      80 .. 0.92
   2 ?   -0.4   0.0      0.39   4.7e+02     347     367 ..     298     317 ..     279     338 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.9e-10
                CEEEE-SSHHHHHHHHHHHHTT--EEEE...ES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi...thkldtiaelsCnpsiggiakgllvrEidalg 60
                +v+V+G+G AG+ AA+ +a lG++++++       + +++++C ps   + ++++ +E +al 
  CTQ26453.1  8 QVVVLGAGPAGYSAAFRCADLGLETVIVerySTLGGVCLNVGCIPSKALLHVAKVIEEAKALA 70
                69**************************88777788899********************9986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.39
                 -TTSBBSSSBTEEE-CGGGTB CS
        GIDA 347 lntLetkkvkgLflAGqinGt 367
                  ++++t+ v+++f+ G+i G 
  CTQ26453.1 298 DKQMRTN-VPHIFAIGDIVGQ 317
                 5689998.**********996 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.3   7.8e-08   9.4e-05       2      35 ..       9      42 ..       8      47 .. 0.91
   2 ?    1.4   0.0      0.11   1.3e+02     374     403 ..     285     316 ..     282     326 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7.8e-08
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefg 35
                   v+V G+G AG++AA ++a+ Gl++++ve  +  g
     CTQ26453.1  9 VVVLGAGPAGYSAAFRCADLGLETVIVERYSTLG 42
                   9**************************9877665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.11
                    -EEEBETTS..BESTTEEESSBTEEE-STCEE CS
  FAD_binding_2 374 gGvetdeng..rvldadgqpipGLYAaGevaa 403
                    +Gve+d++g  rv+++  +++p  +A+G   +
     CTQ26453.1 285 AGVEVDDRGfiRVDKQMRTNVPHIFAIGDIVG 316
                    6888888875577888888*********9875 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   2.2e-06    0.0026       2      36 ..       8      42 ..       7      49 .. 0.93
   2 !    5.4   0.0    0.0051         6     100     163 ..     209     272 ..     190     280 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.2e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +v+v+G+G+AG  aA ++a+ g +++++e+ ++lg
   CTQ26453.1  8 QVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLG 42
                 79***************************988877 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0051
                  EEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.....TTEEEEESEEEE--- CS
  HI0933_like 100 rlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktk....seeeleadklvlAtG 163
                  ++ p++   +d+v++++k++++ + +l+let+v++ve++edg + v+++     +e+ + d++++A+G
   CTQ26453.1 209 QVIPAA--DKDVVKVFTKRISK-KFNLMLETKVTAVEAKEDG-IYVSMEgkkaPAEAQRYDAVLVAIG 272
                  566666..579*********86.689*************999.7777741122334455567777777 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00018      0.22      29      59 ..       7      37 ..       2      42 .. 0.89
   2 !    9.4   0.1   0.00049      0.58      28      69 ..     175     216 ..     170     263 .. 0.78
   3 ?    0.6   0.0      0.24   2.9e+02     126     151 ..     426     450 ..     424     464 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEES CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDv 59
                  +v+v+G+G aG +A+  ++ lg ++++++ 
   CTQ26453.1  7 TQVVVLGAGPAGYSAAFRCADLGLETVIVER 37
                 68*********************99998875 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00049
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles 69 
                  p ++lv+GgG+ Gl+   + ++lg ++ v+++  +++   ++
   CTQ26453.1 175 PKRMLVMGGGIIGLEMGTVYHALGSEIDVVEMFDQVIPAADK 216
                  5789**********************9999987777666665 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.24
                  ETTGGGT-SBTT--TBBTTSEEEEET CS
  AlaDh_PNT_C 126 DvAidqGGnvetsrltthgepvveek 151
                   +Ai+ G   e+++lt h++p+++ +
   CTQ26453.1 426 GLAIEMGCDAEDIALTIHAHPTLH-E 450
                  58*******************998.3 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   1.2e-07   0.00015      16      63 ..       5      51 ..       1      84 [. 0.81

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.2e-07
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTT CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGql 63
                +++ vv+ GaG++G +aa+  a   +l+++i+er  ++GG     G +
  CTQ26453.1  5 IKTQVVVLGAGPAGYSAAFRCADL-GLETVIVERYSTLGGVCLNVGCI 51
                5789*******************9.**********9999977666655 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   3.9e-07   0.00047       1      35 [.       6      40 ..       6      42 .. 0.96
   2 ?   -1.8   0.0       1.2   1.4e+03       5      34 ..     179     208 ..     177     265 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.9e-07
                   EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrst 35
                   +t+V++ GaGpaG ++a   +  G ++v+ve++st
     CTQ26453.1  6 KTQVVVLGAGPAGYSAAFRCADLGLETVIVERYST 40
                   69******************************987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
                    EEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    l+ G+G  Gl  +++ +  G +  +ve  +
     CTQ26453.1 179 LVMGGGIIGLEMGTVYHALGSEIDVVEMFD 208
                    789999999999999999888887777655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   9.9e-07    0.0012       1      36 [.      11      46 ..      11      53 .. 0.95
   2 ?    2.3   0.1      0.16     2e+02       1      29 [.     180     208 ..     180     210 .. 0.88
   3 ?   -1.7   0.0       2.9   3.5e+03      19      35 ..     395     413 ..     383     434 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.9e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36
                   ++GaG +G +aA ++a+ g++ +++e+ + lGG + 
     CTQ26453.1 11 VLGAGPAGYSAAFRCADLGLETVIVERYSTLGGVCL 46
                   89*******************************986 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.16
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    + G+G+ Gl +   ++  g +++++e+ d
     CTQ26453.1 180 VMGGGIIGLEMGTVYHALGSEIDVVEMFD 208
                    56******************999999855 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.9
                    TEEEEEE-SSSS..SSGGG CS
  NAD_binding_8  19 gfdvlllekrdr..lGGra 35 
                    g   l+++k ++  +GG +
     CTQ26453.1 395 GMTKLIFDKETHrvIGGAI 413
                    6666788886555588765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2     0.005         6       1      30 [.       8      37 ..       8      78 .. 0.93
   2 ?    6.0   0.2    0.0081       9.7       4      53 ..     180     229 ..     177     268 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.005
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdi 30
                +v v+GaG  G + a  +a  gle+v+v++
  CTQ26453.1  8 QVVVLGAGPAGYSAAFRCADLGLETVIVER 37
                699************************997 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0081
                 EE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTT CS
     3HCDH_N   4 viGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekg 53 
                 v+G G++G ++ +v  + g e+ +v++ ++ + +a + + k + k ++k+
  CTQ26453.1 180 VMGGGIIGLEMGTVYHALGSEIDVVEMFDQVIPAADKDVVKVFTKRISKK 229
                 99*************************99988888888888766665554 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00065      0.78       2      31 ..       9      36 ..       8      42 .. 0.92
   2 ?   -0.7   0.0      0.47   5.6e+02      94     128 ..     223     256 ..     179     284 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00065
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlie 31
                   vvv GaGpAg s A r   a  gl+ v++e
     CTQ26453.1  9 VVVLGAGPAGYSAAFRC--ADLGLETVIVE 36
                   8****************..99****99998 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.47
  Lycopene_cycl  94 lerlvengvklleakvesveeeeageslvvleggr 128
                     +r+ ++   +le kv++ve++e+   +v +eg +
     CTQ26453.1 223 TKRISKKFNLMLETKVTAVEAKED-GIYVSMEGKK 256
                    344444444555666666666666.4555555544 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.9   0.00041      0.49       2      33 ..       9      42 ..       8      45 .. 0.93
   2 ?   -1.3   0.0         1   1.2e+03     147     201 ..      96     146 ..      95     158 .. 0.67
   3 ?    1.2   0.8      0.18   2.2e+02       3      30 ..     179     208 ..     177     225 .. 0.78
   4 ?   -1.7   0.0       1.4   1.6e+03     162     201 ..     231     272 ..     213     276 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00041
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                vv+ G+G +G s+A+  a  g  ++++e+ + +g
  CTQ26453.1  9 VVVLGAGPAGYSAAFRCADLGleTVIVERYSTLG 42
                9****************999*********98887 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1
                 HHHHHHHHHHHHTT-EEEES....ECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--G CS
         DAO 147 kltaalaraaealGveileg....tevtgleeedgkvwgverttpgendaadavVnaaG 201
                 +lt +la  a+ + v++++g    t +  le e++ +++v      +n  +d  ++aaG
  CTQ26453.1  96 QLTGGLAGMAKGRKVKVVNGlgkfTGANTLEVEGENGKTV------IN--FDNAIIAAG 146
                 5788999999999999999966664444444333334455......33..677888888 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.18
                 EEECTSHHHH..HHHHHHHHTTEEEEESSS CS
         DAO   3 viiGGGiiGl..stAyeLarrgVtllekgd 30 
                 ++ GGGiiGl  +t y++    + ++e+ d
  CTQ26453.1 179 LVMGGGIIGLemGTVYHALGSEIDVVEMFD 208
                 799******866888888443388888765 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 1.4
                 EEEESECEEEEEEEETCEEEEE...EECT.EEEEEEEEEEE--G CS
         DAO 162 eilegtevtgleeedgkvwgve...rttp.gendaadavVnaaG 201
                 ++ ++t+vt++e+++++   v    +++p +++ ++dav +a G
  CTQ26453.1 231 NLMLETKVTAVEAKEDG-IYVSmegKKAPaEAQ-RYDAVLVAIG 272
                 56677999999775422.344366655554554.5699999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3434.46
//
Query:       CTQ26454.1  [L=94]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.042   14.0   0.2      0.072   13.3   0.2    1.4  1  DUF4148        Domain of unknown function (DUF4148)
       0.13   12.2   0.7       0.13   12.2   0.7    1.9  2  Bacillus_PapR  Bacillus PapR protein
       0.83   10.0   5.2       0.17   12.3   1.1    1.7  2  PE             PE family


Domain annotation for each model (and alignments):
>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   1.2e-05     0.072       1      31 [.       1      59 [.       1      63 [. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
     DUF4148  1 Mkstliaaalaaavaaaaala............................ahskspkTRA 31
                Mk+ l+ a++aa++ + +a a                            +h++ +kT +
  CTQ26454.1  1 MKRFLTTALVAATFFTGVACAadanipwadnsggtetthiaamgqdlnaQHQQVTKTNE 59
                9*999999999988888888899************************999999999965 PP

>> Bacillus_PapR  Bacillus PapR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.7   2.2e-05      0.13       1      19 [.       1      19 [.       1      23 [. 0.95
   2 ?   -1.0   0.2      0.28   1.6e+03      24      29 ..      50      55 ..      42      65 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.2e-05
  Bacillus_PapR  1 mkkFLaCsLvavamLaGva 19
                   mk+FL  +Lva     Gva
     CTQ26454.1  1 MKRFLTTALVAATFFTGVA 19
                   9*****************9 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.28
  Bacillus_PapR 24 qDqaLt 29
                   q q +t
     CTQ26454.1 50 QHQQVT 55
                   444444 PP

>> PE  PE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.32   1.9e+03      32      43 ..      11      22 ..       3      26 .. 0.50
   2 ?   12.3   1.1   2.8e-05      0.17      16      57 ..      38      79 ..      34      82 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.32
                HHHHHH----SS CS
          PE 32 aaapttavlaaa 43
                aa   t+v+ aa
  CTQ26454.1 11 AATFFTGVACAA 22
                333444444443 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.8e-05
                HHHHHHHHHHHHHHHHHHHHHH----SSSSHHHHHHHHHHHH CS
          PE 16 adlagigsalsaanaaaaapttavlaaaaDeVSaaiAalfsa 57
                +++a++g+ l+a++++++ +  +v aa +  +Sa  Aal s+
  CTQ26454.1 38 THIAAMGQDLNAQHQQVTKTNEGVWAANSGSISADEAALSST 79
                789***********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 756.18
//
Query:       CTQ26455.1  [L=268]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-78  264.2   0.7    7.8e-77  258.1   0.7    2.0  1  DUF2950   Protein of unknown function (DUF2950)


Domain annotation for each model (and alignments):
>> DUF2950  Protein of unknown function (DUF2950)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.1   0.7   4.3e-81   7.8e-77       1     269 [.      22     260 ..      22     265 .. 0.95

  Alignments for each domain:
  == domain 1  score: 258.1 bits;  conditional E-value: 4.3e-81
     DUF2950   1 qkvfatpeaAaealveavaaedeaalakvlGkeakelvesgdevadredrekflaaakekheieeeeekkavlavGkdewtlpiPlvkkgkkWaFdtka 99 
                 q++fatpe+Aa+al+ea+++ +eaal++vlG++++++++++   +d +++++f ++++ kh i ++   ka l vG++ w+lp+P+vk++++W+Fd++a
  CTQ26455.1  22 QQQFATPEQAATALAEAISQPNEAALSEVLGDNWQQFLPTDG--IDPAAVDRFQRDWQVKHVIIQQ-GGKAWLDVGSEAWRLPVPIVKTSEGWRFDMAA 117
                 899*************************************87..9****************99998.899***************************** PP

     DUF2950 100 gkeEiltRriGrnElaaieallayvdAqreYaekdrdgegvleyAqklvsspGkkdGLyWpakegeeesPlgelvakaakegkakkepyhGYyfriLka 198
                 g+eEiltR iGrnEl+ai+a++ayvdAq++Y++        +++Aqk++ss+GkkdGLyWp+++ge+ sPlg++++      + ++++yhGY+fri+ +
  CTQ26455.1 118 GEEEILTRAIGRNELSAIAAMHAYVDAQQDYYHL------NHRWAQKIISSEGKKDGLYWPTSPGEAPSPLGPAFS-----PTVPGSGYHGYRFRIIAG 205
                 ********************************99......569********************************4.....45699***********98 PP

     DUF2950 199 qGpsapgGaldyvvkgklikGfalvawPaeygetGvmsFivnqdgqvyekdLGketaevakaikafdPdks 269
                 + ++                  al+awP  +getGvmsF+++q+ +vy+ +LG+e+a++a++i++f Pd++
  CTQ26455.1 206 RDDQSV----------------ALLAWPIAWGETGVMSFMIDQQDRVYQANLGEESAAKAQEITRFTPDAD 260
                 877665................9********************************************9853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1904.44
//
Query:       CTQ26456.1  [L=536]
Description: hypothetical protein CH1034_120094 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-87  293.5   4.8      1e-87  293.5   4.8    1.9  2  DUF3300         Protein of unknown function (DUF3300)


Domain annotation for each model (and alignments):
>> DUF3300  Protein of unknown function (DUF3300)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.5   4.8   5.8e-92     1e-87       1     229 []      59     328 ..      59     334 .. 0.94
   2 ?   -7.9   6.3         1   1.8e+04     103     138 ..     443     478 ..     433     480 .. 0.74

  Alignments for each domain:
  == domain 1  score: 293.5 bits;  conditional E-value: 5.8e-92
     DUF3300   1 sqaqldqllaPiALYPDsllsqvLiastyPlevveAarwlkqnkklkgdalvkavekqdWDpSvkaLvafpdvLeklsedldwtqkLGdaflaqeeevl 99 
                 +qaq+dq++aPiALYPDsllsqvL+astyP +v++A +w+++n+ +kgda+v+av++q+WDpSvk+Lvafp +L++++e++ w+++LG+aflaq+++v+
  CTQ26456.1  59 TQAQIDQWVAPIALYPDSLLSQVLMASTYPDNVLQAVQWSQDNPAMKGDAAVQAVASQPWDPSVKSLVAFPALLAMMGENPPWVENLGNAFLAQPHDVM 157
                 589************************************************************************************************ PP

     DUF3300 100 davQrLRqkAkaagnLksteqqkvtve........................eeqiviepanpevvYvPyYdpavvYgawaypayppvywapppkyaagl 174
                 d+vQrLR+ A+++g+Lkst+qqkv+v+                        +++i+iep+np+vvYvP+Y+p++vYg+w+++ayppvy++ppp+++++ 
  CTQ26456.1 158 DSVQRLRAIAQQTGTLKSTPQQKVIVTpaapvsassstaatatahtaapapTQVIKIEPTNPQVVYVPSYNPSTVYGTWPNSAYPPVYLPPPPGEQFTD 256
                 *************************************************99999********************************************* PP

     DUF3300 175 afaagvaiga....asalfggieWekrd...................vnvnvnrknrinknnseskrkesknakrwqh 229
                 +f++g+ +++    ++alf++i+W+++d                   +n+nvn+ n+i+ +n   +      + +wqh
  CTQ26456.1 257 SFVKGFGYSLgvatTWALFSSIDWDDDDhhhhdddyhhgdyshngdkININVNNFNHITGENLPGN------HVNWQH 328
                 *****99998889999*********99889999999999999999888888888888887766644......344444 PP

  == domain 2  score: -7.9 bits;  conditional E-value: 1
     DUF3300 103 QrLRqkAkaagnLksteqqkvtveeeqiviepanpe 138
                 Q+ R++A ++ + + t+qq+ +++++    +pa+++
  CTQ26456.1 443 QQQRREAARSHEQNRTPQQQQQRRQQFQSATPAQRQ 478
                 566777777777777777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2496  (0.139216); expected 358.6 (0.02)
Passed bias filter:                      669  (0.0373138); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 3509.66
//
Query:       CTQ26457.1  [L=75]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 575.76
//
Query:       CTQ26458.1  [L=865]
Description: aconitate hydratase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-98  327.4   0.0    4.5e-98  326.9   0.0    1.2  1  Aconitase_2_N    Aconitate hydratase 2 N-terminus
    5.5e-68  227.9   0.2    9.8e-68  227.1   0.2    1.4  1  Aconitase_B_N    Aconitate B N-terminal domain
      2e-40  139.2   0.0    1.2e-38  133.3   0.0    2.4  1  Aconitase        Aconitase family (aconitate hydratase)
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.27   11.3   0.0    1.6  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase_2_N  Aconitate hydratase 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.9   0.0    1e-101   4.5e-98       1     204 []     168     382 ..     168     382 .. 0.99

  Alignments for each domain:
  == domain 1  score: 326.9 bits;  conditional E-value: 1e-101
                    EEEEEEEEEEEHHHHS-GGGGGGTTSHHHHHCCTT-S-BTT..........SHHHHHHHHTTSS-EEEEEEEEEES---THHHHHHHHHHSEEETT CS
  Aconitase_2_N   1 vtvfkveGetntDdlsPasdAwsRsDiplHakamlkkkaee..........elkaieelkkkgvplayvgdvvGtGssRksavnsvlWtigedipy 86 
                    vtvfkv+GetntDdlsPa+dAwsR+DiplHa amlk+ +e+          ++k+ie+l++kg+playvgdvvGtGssRksa+nsvlW++g+dip+
     CTQ26458.1 168 VTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNPREGiepdqpgvvgPIKQIEALQQKGYPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPN 263
                    79********************************************************************************************** PP

                    EEEEEE--EEEEEEE-HHHHHHHHHTT-EEEE---TT--TT-EEEEETTTTEEEE.TT--EEEE---S-TCHHHHHHHTSHHHHHHHHHHHHHHHH CS
  Aconitase_2_N  87 vPnkraggvvlGgkiaPiFfntvedsGalpieadvskletGdvieikpkegkikk.eegevvsefklkpetlldevraggripliigrgltekare 181
                    vPnkr gg++lGgkiaPiFfnt+ed+Galpie+dvs+l++Gdvi+++p++g++++ e++e++++f+lk+++l+devraggripliigrglt+kare
     CTQ26458.1 264 VPNKRGGGLCLGGKIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDVYPFKGEVRNhETNELLASFELKTDVLIDEVRAGGRIPLIIGRGLTTKARE 359
                    ******************************************************988899************************************ PP

                    HTT-----SS----------S-- CS
  Aconitase_2_N 182 algleasdvFakpkepaeegkgy 204
                    algl++sdvF+++k++ae+++g+
     CTQ26458.1 360 ALGLPHSDVFRQAKDVAESTRGF 382
                    ********************998 PP

>> Aconitase_B_N  Aconitate B N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.1   0.2   2.2e-71   9.8e-68       1     154 []       4     156 ..       4     156 .. 1.00

  Alignments for each domain:
  == domain 1  score: 227.1 bits;  conditional E-value: 2.2e-71
  Aconitase_B_N   1 eyrkhveeraalgipplPLdaeqtaelvellknpkageeellleLltnrvppGvdeaayvKAefLaaiakgeaesplispeeAvelLgtMlGGynv 96 
                    eyrkhv+eraa+gi ++PLda+q+a+lvellknp+ageee+ll+Ll+nrvppGvdeaayvKA+fLaaiakgea+spl++pe+AvelLgtM+GGyn+
     CTQ26458.1   4 EYRKHVAERAAMGIVAKPLDATQMAALVELLKNPPAGEEEFLLDLLINRVPPGVDEAAYVKAGFLAAIAKGEATSPLVTPEKAVELLGTMQGGYNI 99 
                    6*********************************************************************************************** PP

  Aconitase_B_N  97 ksLidllkekdeelaeeaaeaLkktllvydafedveelake.naaakevleswaeaewF 154
                    ++Lid+l+  d++la  aa+aL++tll++d+f+dvee+ak+ n++ak+v++swa+aewF
     CTQ26458.1 100 HPLIDALD--DAKLAPIAAKALSHTLLMFDNFYDVEEKAKAgNEHAKQVMQSWADAEWF 156
                    ********..************************************************9 PP

>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.0   2.8e-42   1.2e-38     102     461 .]     472     818 ..     408     818 .. 0.84

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 2.8e-42
   Aconitase 102 vppgqGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavigklrkkgvv.. 198
                   pg G++H   l+  ++lp+++  g+DSHT+   g   + ++ G+  ++ + ++  + l +p++v v+++Gk+++g+t +Dlv+a+     k+g    
  CTQ26458.1 472 LRPGDGVIHSW-LNR-MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLtv 565
                 6799******9.666.7***************9999...89*******************************************998544333333233 PP

   Aconitase 199 ...gkvvEffG.....egvesLsledraTiaNMaaEvGAttglfpvde.ktleYLkatgr................eeaav.lveaydkaqalfelaad 271
                    gk   f G     eg+ +L++e+ + +++ +aE  A  ++++ ++  ++eYL+ +                  e  ++  +e++ +  +   l+ad
  CTQ26458.1 566 ekkGKKNIFSGrileiEGLPDLKVEQAFELTDASAERSAAGCTIKLNKePIVEYLNSNIVllkwmiaegygdrrtlE-RRIqGMEKWLADPQ--LLEAD 661
                 33355555555555558899*******************9999999884689***9544477777777665443211.11212344444444..2789* PP

   Aconitase 272 edaeydkvleldlstl.epsvagpkrPqdavplselvkkefkeelekeaaekaleyklkegtklkdgkvdiaaigSCTNssnedvraaagllakavekg 369
                 +daey+ v+++dl+++ ep +  p+ P+da  l ++v                           +  k+d ++igSC+ +++ ++raa +ll+  ++kg
  CTQ26458.1 662 ADAEYAAVIDIDLADIkEPILCAPNDPDDARLL-SDV---------------------------QGEKIDEVFIGSCM-TNIGHFRAAGKLLD--SHKG 729
                 ****************66999*********999.333...........................234699*******8.678***********..5666 PP

   Aconitase 370 lkvkpgvktsvaPGSevvkayleaeGlleiLekaGfevvgagCstCignsdrleegeaivsssNRNFegRqgpntrayLaSPelvvaaAlaG 461
                 +      +++vaP ++   a+l++eG+ +++ k G+ +  +gCs C+gn+ r+++g ++vs+s+RNF +R g++++ yLaS el+++a+l G
  CTQ26458.1 730 Q-LP--TRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLGTGANVYLASAELAAVASLLG 818
                 3.33..47*******************************************************************************99987 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     6e-05      0.27      57      96 ..     686     723 ..     683     742 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6e-05
                      HHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGHHH CS
  Ketoacyl-synt_C  57 gDpiElealkkvfgekarkqplavgSvKsniGHleaAaGv 96 
                      +Dp  +++l++v gek   +++++gS+ +niGH  aA  +
       CTQ26458.1 686 NDPDDARLLSDVQGEKI--DEVFIGSCMTNIGHFRAAGKL 723
                      899999*********99..56*************999655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5949.40
//
Query:       CTQ26459.1  [L=120]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-41  141.3   1.4    1.8e-41  141.2   1.4    1.0  1  UPF0231   Uncharacterised protein family (UPF0231)
  ------ inclusion threshold ------
      0.066   13.9   0.1         12    6.6   0.0    2.3  2  DUF5395   Family of unknown function (DUF5395)


Domain annotation for each model (and alignments):
>> UPF0231  Uncharacterised protein family (UPF0231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   1.4     2e-45   1.8e-41       1     121 []       1     117 [.       1     117 [. 0.97

  Alignments for each domain:
  == domain 1  score: 141.2 bits;  conditional E-value: 2e-45
     UPF0231   1 MdYeftrdlegevvakfsmeheaigrWlneevgkdlekiqevlaaieelkasqeeelqlkgkeysllldedevevkanalaleedeeeeleedlslyde 99 
                 MdYef rd++g v++++sm+heaig+W+neev+ +l+ ++ev +a +++k s e+++q  g+ey+l+ld +ev+++an+l+++ de   +ee++s+yde
  CTQ26459.1   1 MDYEFLRDITGVVKVRMSMDHEAIGHWFNEEVKGNLALLDEVEQAARTVKGS-ERSWQRAGHEYTLWLDGEEVMIRANQLEFSGDE---IEEGMSYYDE 95 
                 ****************************************************.***************************777666...9********* PP

     UPF0231 100 esiafCGleDfeelleswqefi 121
                 es++ CG+eDf +++ +++ef+
  CTQ26459.1  96 ESLSLCGVEDFLQVVAAYREFM 117
                 ********************96 PP

>> DUF5395  Family of unknown function (DUF5395)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0042        37      48      65 ..      11      28 ..       5      32 .. 0.87
   2 ?    6.6   0.0    0.0014        12       3      29 ..      62      88 ..      61      96 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0042
     DUF5395 48 sqvevfmkfDyetiPtwi 65
                + v+v+m  D e+i +w 
  CTQ26459.1 11 GVVKVRMSMDHEAIGHWF 28
                569*************97 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0014
     DUF5395  3 elrlvhdgekWiaeneelvvkgktlee 29
                e +l+ dge+ ++++++l+ +g+++ee
  CTQ26459.1 62 EYTLWLDGEEVMIRANQLEFSGDEIEE 88
                5789********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 903.73
//
Query:       CTQ26460.1  [L=264]
Description: S-adenosylmethionine decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-31  108.1   0.0    9.5e-31  106.2   0.0    1.9  2  AdoMet_dc        S-adenosylmethionine decarboxylase
     0.0087   16.2   0.2        0.8    9.9   0.0    2.3  2  RuBisCO_large_N  Ribulose bisphosphate carboxylase large chai
  ------ inclusion threshold ------
        1.7    8.8   3.6         11    6.1   0.9    2.6  2  Col_cuticle_N    Nematode cuticle collagen N-terminal domain


Domain annotation for each model (and alignments):
>> AdoMet_dc  S-adenosylmethionine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.0   1.6e-34   9.5e-31       5     106 .]      33     169 ..      32     169 .. 0.99
   2 ?   -1.4   0.0      0.47   2.8e+03      57      67 ..     225     235 ..     200     239 .. 0.70

  Alignments for each domain:
  == domain 1  score: 106.2 bits;  conditional E-value: 1.6e-34
                 EEES--HHHCTSHHHHHHHHHHHHHHCT-EEEEEEEEE-SSS-EEEEEEETT...........................EEEEEEEEGGGTE....... CS
   AdoMet_dc   5 dlygcdpelledaelleqilteaaeaigatvlsvafhkfepeGvsvvvliae...........................ShlsiHtwpetgy....... 69 
                 d y ++ ++l++a++l +ilte +++iga++l++a +++ep+G+sv++l++e                           Sh+++Ht+pe ++       
  CTQ26460.1  33 DGYIAYIDELYNANRLTEILTETCSIIGANILNIARQDYEPQGASVTILVSEepvdpklidqtehpgplpetvvahldkSHICVHTYPESHPegglctf 131
                 6788999******************************************************************************************** PP

                 .EEEEEEEESTHHHHHHHHHHHHHHT-SEEEEEEEEEE CS
   AdoMet_dc  70 .aaiDvftcgeispekaleylieafkadrvtvdelkRG 106
                  a+i+v tcg isp+kal+yli+++++d+vt+d+++RG
  CTQ26460.1 132 rADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRG 169
                 *************************************8 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.47
                 EEEEEEEEGGG CS
   AdoMet_dc  57 ShlsiHtwpet 67 
                  h + Ht pe+
  CTQ26460.1 225 KHYMFHTRPEE 235
                 57888888886 PP

>> RuBisCO_large_N  Ribulose bisphosphate carboxylase large chain, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00013       0.8      54      99 ..      12      62 ..       5      71 .. 0.77
   2 !    4.2   0.0    0.0077        46      54     104 ..     142     192 ..     131     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00013
  RuBisCO_large_N 54 llkklkakvyeieevee.ekelvkiAYplelFeegsipqlls...siaG.n 99
                     l+k+l+  +y+i  +++ e+   +iAY  el++ + ++++l+   si+G n
       CTQ26460.1 12 LTKSLSFCIYDICYAKTaEERDGYIAYIDELYNANRLTEILTetcSIIGaN 62
                     57778888899987776689999*************999998444566634 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0077
  RuBisCO_large_N  54 llkklkakvyeieeveeekelvkiAYplelFeeg..sipqllssiaGnifgmk 104
                      +++ lka+ y i+++  e+ +v+i Y ++ F ++   + +++   +  i+++ 
       CTQ26460.1 142 VISPLKALNYLIHQL--ESDIVTIDYRVRGFTRDinGMKHFIDHEINSIQNFM 192
                      4678999*****997..89***********97654467776666666555554 PP

>> Col_cuticle_N  Nematode cuticle collagen N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.9    0.0019        11      23      38 ..     183     198 ..     173     204 .. 0.89
   2 ?    2.5   0.1     0.025   1.5e+02      40      50 .]     242     252 ..     238     252 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0019
  Col_cuticle_N  23 ndiqsfqsevldemde 38 
                    ++i+s+q+ ++d+m++
     CTQ26460.1 183 HEINSIQNFMSDDMKS 198
                    79************86 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.025
  Col_cuticle_N  40 ktraddaWsem 50 
                    k+++d +W+em
     CTQ26460.1 242 KVITDLLWKEM 252
                    899*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2024.80
//
Query:       CTQ26461.1  [L=286]
Description: spermidine synthase (putrescine aminopropyltransferase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-66  223.0   0.0    3.7e-66  222.1   0.0    1.4  2  Spermine_synth   Spermine/spermidine synthase domain
    5.8e-20   70.9   0.2      1e-19   70.1   0.2    1.5  1  Spermine_synt_N  Spermidine synthase tetramerisation domain
    5.5e-06   27.0   0.1    1.8e-05   25.4   0.0    1.9  2  Methyltransf_25  Methyltransferase domain
    0.00053   20.6   0.0     0.0023   18.5   0.0    2.1  1  Methyltransf_11  Methyltransferase domain
     0.0014   18.4   0.0     0.0023   17.8   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
     0.0031   17.1   0.0      0.005   16.4   0.0    1.4  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.018   15.8   0.0      0.064   14.0   0.0    2.0  1  Methyltransf_12  Methyltransferase domain
      0.053   13.4   0.0       0.13   12.1   0.0    1.7  1  Methyltransf_23  Methyltransferase domain
       0.21   11.1   0.5        1.7    8.2   0.1    2.1  2  MetW             Methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.1   0.0   1.9e-69   3.7e-66       1     181 [.      60     239 ..      60     247 .. 0.98
   2 ?   -3.3   0.0       2.5   5.1e+03     143     170 ..     254     280 ..     248     282 .. 0.74

  Alignments for each domain:
  == domain 1  score: 222.1 bits;  conditional E-value: 1.9e-69
                     THHHHHHHHHHHHCCSSST-EEEEESSTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHSHHHHTTCGGCTTEEEEESTCHHHHCTCSS-EEE CS
  Spermine_synth   1 efaykemiahvplmlhknpkevLiiGGgDGgvlrevvkhntvekitlvdiDqkvidfskkflpslaisafndarvklvlgdgfkflkayekkfdv 95 
                     ef+y+em++hvpl++h n k+vLiiGGgDG +lrev +h ++e+it+v+iD  v++f++++lp+++++a++d+r++lv++dg++f++++ ++fdv
      CTQ26461.1  60 EFIYHEMMTHVPLLAHGNAKHVLIIGGGDGAMLREVSRHRSIETITMVEIDAGVVSFCRQYLPNHNAGAYDDPRFTLVIDDGVNFVNQTTQTFDV 154
                     79********************************************************************************************* PP

                     EEEECCSTTCSSCGCSSHHHHHHHHHTEEEEEEEEEEEEETTTCHHHHHHHHHHHHTTSSCEEEEEEEETTTSCSCEEEEEEEESS CS
  Spermine_synth  96 vivdsldpvgpaenlFskeffdllkkvlkedGviilqaekpelekelvinvdksgkqvfalqvepsavlvPtylsgminfvveskk 181
                     +i d++dp+gp e+lF++ f++++k++l+++G++++q+  ++l+++     +++++++f+ +v+++ + +Pty++g+++f+++s++
      CTQ26461.1 155 IISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQDEAVGSHRKLSHYFR-DVSFYQAAIPTYYGGIMTFAWASDN 239
                     ************************************************************.***********************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.5
                     HHHHHHHHHTTSSCEEEEEEEETTTSCS CS
  Spermine_synth 143 vinvdksgkqvfalqvepsavlvPtyls 170
                     +++++ +++ + +  ++ +a+ +P+yl 
      CTQ26461.1 254 FHKANLTCRYYNP-AIHTAAFALPQYLH 280
                     5566667777777.88899999999975 PP

>> Spermine_synt_N  Spermidine synthase tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.2   5.3e-23     1e-19       1      53 []       6      57 ..       6      57 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 5.3e-23
                     EEEEEEEETTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEET CS
  Spermine_synt_N  1 gWfteisdpglalelkVekvLyeekSeyQdieifesktfGkvLvLDgvvqltE 53
                     +W+++ +d  +++++ V++vLy+ek+++Qd+ if++ +fG+v++LDgvvq+tE
       CTQ26461.1  6 LWHETLHD-HFGQYFSVDNVLYHEKTDHQDLIIFDNRAFGRVMALDGVVQTTE 57
                     5*******.*******************************************9 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.9   1.2e+04      54      73 ..      31      51 ..      19      68 .. 0.61
   2 !   25.4   0.0   8.9e-09   1.8e-05       1      97 []      81     186 ..      81     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.9
                     BCCGBS.SSTTTEEEEEEEST CS
  Methyltransf_25 54 daedlp.fedgsfDlvvssga 73
                     d +dl  f+++ f  v++  +
       CTQ26461.1 31 DHQDLIiFDNRAFGRVMALDG 51
                     555543366667777777555 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 8.9e-09
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT......TEEEEESBCCG.BSSSTTTEEEEEEESTGGGSSHHHH...HH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl......nvefvqgdaed.lpfedgsfDlvvssgalhhlsdedl...ek 84 
                      vL +G G G ++++++++ + +++t+v+i+++ +  +r+ + ++++      ++++v  d  + +++  ++fD+++s  +   + + +     +
       CTQ26461.1  81 VLIIGGGDGAMLREVSRHRSIETITMVEIDAGVVSFCRQYLPNHNAgayddpRFTLVIDDGVNfVNQTTQTFDVIIS-DCTDPIGPGESlftSA 173
                      789***************779*****************99988555557777********9773679999*******.6756555444223378 PP

                      HHHHHHHHEEEEE CS
  Methyltransf_25  85 alkeiarvLkpgG 97 
                      +++ ++r+L+pgG
       CTQ26461.1 174 FYEGCKRCLNPGG 186
                      999*********9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.2e-06    0.0023       3      95 ..      84     189 ..      82     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.2e-06
                      ET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-......EEEETTEECCCT.SS-TT-EEEEEEES-CCC-....CCHHHHHHH CS
  Methyltransf_11   3 vGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl......kvefvvadaekl.pfednsfDlvvssevlhhv....edpekalke 83 
                      +G G G++++++ ++   ++++ v++++ ++  +++  ++ +       ++++v  d  ++ +   ++fD+++s  +           +++ + 
       CTQ26461.1  84 IGGGDGAMLREVSRHRsiETITMVEIDAGVVSFCRQYLPNHNAgayddpRFTLVIDDGVNFvNQTTQTFDVIISDCTDPIGpgesLFTSAFYEG 177
                      89***********77778******************9999998999999999999**999769999******9987433334433367889999 PP

                      HHHHEEEEEEEE CS
  Methyltransf_11  84 iaRvLkpgGllv 95 
                      ++R+L pgG++v
       CTQ26461.1 178 CKRCLNPGGIFV 189
                      **********98 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.1e-06    0.0023       4     124 ..      78     205 ..      75     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.1e-06
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielAre...naqklgld..nveFeqgdieeleklledekfDlilsnevl....nala 88 
                      +++vl +G G G+ + e   + ++  +++ ++i++ +++++r+   n     +d  ++++ + d  ++ ++ + ++fD+i+s+++         
       CTQ26461.1  78 AKHVLIIGGGDGAMLREVS-RHRSIETITMVEIDAGVVSFCRQylpNHNAGAYDdpRFTLVIDDGVNFVNQ-TTQTFDVIISDCTDpigpGESL 169
                      6677888999999999999.66776779999999*********6665555566688889999999995544.4589*******99888998888 PP

  Methyltransf_31  89 dpdkileeiervlkpggilliedprllaelpakvee 124
                      +  +++e+ +r l+pggi+++++     ++++ v +
       CTQ26461.1 170 FTSAFYEGCKRCLNPGGIFVAQNGVCFLQQDEAVGS 205
                      999******************999844444443333 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.5e-06     0.005      30     135 ..      76     188 ..      49     219 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.5e-06
                 CTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC......EEEEE-STTTTST..TS-EEEEEE--..-STTTCHCHHHHH CS
         MTS  30 elsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle......vevvasdvleeve..ekkfdlivsNP..Pfhagkatelava 118
                   +++vl +G G G++  ++ ++ +  ++t+v++da  + ++++ l ++++        ++v  d+++ v+   + fd+i+s    P+  g+      +
  CTQ26461.1  76 GNAKHVLIIGGGDGAMLREVSRHRSIETITMVEIDAGVVSFCRQYLPNHNAGayddprFTLVIDDGVNFVNqtTQTFDVIISDCtdPIGPGES---LFT 171
                 3678899***************999999****************99888776677888889999987755433599*****864339998888...789 PP

                 HHHHHHHHHHEEEEEEE CS
         MTS 119 eeliaeAkeaLkegGeL 135
                  ++ +  k++L++gG +
  CTQ26461.1 172 SAFYEGCKRCLNPGGIF 188
                 99999999999999965 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.2e-05     0.064       1      72 [.      82     157 ..      82     188 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.2e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.......ssfDlvva 72 
                      L iG+G+G++lr++ ++ +  ++t v+i++ ++   ++ l  +++   +  +++   ++            ++fD++++
       CTQ26461.1  82 LIIGGGDGAMLREVSRHRSIETITMVEIDAGVVSFCRQYLPNHNAGAYDDPRFTLVIDDG---VnfvnqttQTFDVIIS 157
                      569**************9999999*********999999999999888888887554332...2346889999999984 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.5e-05      0.13      21     119 ..      76     192 ..      58     261 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.5e-05
  Methyltransf_23  21 raggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae................kakkaqkdqfdeqeaaepqg..............k 82 
                         + vL iG G+G +l++ ++++   ++t+v+++   v+  +                +                                 +
       CTQ26461.1  76 GNAKHVLIIGGGDGAMLREVSRHRSieTITMVEIDAGVVSFCRqylpnhnagayddprfT------------------LviddgvnfvnqttqT 151
                      55678999************88877789******98777665466665555555555441..................0222223333333339 PP

  Methyltransf_23  83 fdlIvlrevlehvpdppellrqiat.....llkpgGylllse 119
                      fd+I++ +++  + + ++l+++++      +l+pgG ++ + 
       CTQ26461.1 152 FDVIIS-DCTDPIGPGESLFTSAFYegckrCLNPGGIFVAQN 192
                      999874.77777777777777765444444888888877766 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.13   2.6e+02      63      99 ..      30      67 ..      21      71 .. 0.81
   2 ?    8.2   0.1   0.00083       1.7      15      53 ..      79     118 ..      65     156 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.13
        MetW 63 dldkdlenfedksfdyvv.lsqtlqatrnpkevldell 99
                   +dl  f++++f  v+ l   +q+t + + + +e++
  CTQ26461.1 30 TDHQDLIIFDNRAFGRVMaLDGVVQTTERDEFIYHEMM 67
                44689*********9775488999*9999999999986 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00083
        MetW  15 srvldlGcGdGellellkeekqvdgrGl.eldeegvaecv 53 
                  +vl +G GdG +l+ +  ++ +++  + e+d+  v  c 
  CTQ26461.1  79 KHVLIIGGGDGAMLREVSRHRSIETITMvEIDAGVVSFCR 118
                 579********************99775166655555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2095.96
//
Query:       CTQ26462.1  [L=619]
Description: Peptidyl-prolyl cis-trans isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-10   40.9   0.0    9.6e-10   38.7   0.0    2.2  2  FKBP_C         FKBP-type peptidyl-prolyl cis-trans isomerase
    2.3e-09   38.1   2.2    2.3e-09   38.1   2.2    6.6  5  FKBP_N         Domain amino terminal to FKBP-type peptidyl-pr
    0.00058   19.7   8.4       0.21   11.5   0.5    3.7  3  PKcGMP_CC      Coiled-coil N-terminus of cGMP-dependent prote
     0.0049   16.9   7.1         14    5.8   0.2    4.9  5  DUF3475        Domain of unknown function (DUF3475)
     0.0071   15.7  18.1     0.0071   15.7  18.1    5.1  7  GAS            Growth-arrest specific micro-tubule binding
  ------ inclusion threshold ------
      0.027   14.5   2.0      0.071   13.2   0.1    2.4  2  DUF2714        Protein of unknown function (DUF2714)
      0.046   13.5  18.5        4.1    7.2   0.1    5.9  5  SSURE          Fibronectin-binding repeat
       0.19   12.0  36.6       0.13   12.5  19.0    3.8  3  zf-C4H2        Zinc finger-containing protein
        1.3    9.2  29.7      0.067   13.4   5.6    5.1  7  JIP_LZII       JNK-interacting protein  leucine zipper II


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.1   4.1e+03      37      60 ..     442     466 ..     433     475 .. 0.80
   2 !   38.7   0.0   4.8e-13   9.6e-10       6      93 ..     526     610 ..     521     611 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.1
                 EETTSSSSCHHHHHHHTT.SBTT-E CS
      FKBP_C  37 fkvGsgqvikGfeealeg.mkvGek 60 
                 ++v++g v++G+e+a +g +++Ge+
  CTQ26462.1 442 VTVDAGLVLQGIEDAFRGqLRLGEQ 466
                 6899999999999999876677766 PP

  == domain 2  score: 38.7 bits;  conditional E-value: 4.8e-13
                 -TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEE CS
      FKBP_C   6 kegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveL 93 
                   +d Vtv  k +l+dg+v+ +   + + l+ k++   + + f e l+ ++  +  tl +ppe aYg+kgl +++ipp+at+v+ v +
  CTQ26462.1 526 SGNDLVTVVIKEMLTDGTVINDMEAKDQALTQKLD--AYPPVFREPLKRLQNHGSVTLVVPPEKAYGSKGL-PPKIPPGATMVYSVRI 610
                 56799******************667777777777..69********************************.88***********987 PP

>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   7.1       1.4   2.7e+03      39      73 ..      38      72 ..      16      77 .. 0.48
   2 ?  -10.8  19.9         9   1.8e+04      42      84 ..     148     193 ..      69     199 .. 0.66
   3 ?  -14.5  19.7         9   1.8e+04      14      54 ..     257     297 ..     191     344 .. 0.60
   4 ?   -0.9   0.2       1.7   3.3e+03      25      70 ..     363     412 ..     350     417 .. 0.57
   5 !   38.1   2.2   1.2e-12   2.3e-09       2      87 ..     416     508 ..     415     514 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.4
      FKBP_N 39 kskltde.eiqevlqalqeklqekqeeeaeknkaeg 73
                 ++ t++ ++qe  +a+ +k++++  +++++nk+ g
  CTQ26462.1 38 AQQQTQQsQAQEKNDAASAKQTQES-RQSADNKKTG 72
                2222233345544444433333333.4555555554 PP

  == domain 2  score: -10.8 bits;  conditional E-value: 9
      FKBP_N  42 ltdeeiqevlqalqeklqekq...eeeaeknkaegeaFlaenkkke 84 
                 ++++++q+  +a+++++q+     +++ ++nk  +++F + nk k 
  CTQ26462.1 148 VQNNNLQQSQAAARQQIQQLTtqiQQAEAENKRLSASFTTLNKDKH 193
                 2222333333333222222223336677999999999999999886 PP

  == domain 3  score: -14.5 bits;  conditional E-value: 9
      FKBP_N  14 qqlkaqgkeldkdavlaGlkdalkgkskltdeeiqevlqal 54 
                    kaq+  ld+++ l++ k+ l+   + +++e q+vl+++
  CTQ26462.1 257 AAEKAQQAALDQAKALNADKQPLATRLAAAEKEKQAVLEQV 297
                 22223333333333333333333333333233333333333 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.7
      FKBP_N  25 kdavlaGlkdal.kgksk..ltdeeiqevlqalqeklqekq.eeeaeknk 70 
                 ++a++a+ +    k++++  ++++ei+ + ++l  + +++  e +a+k  
  CTQ26462.1 363 MAAIVAAYRLQAdKDNAQlrMKEDEIELLRTQLSVQSKTRSgESAAAKLS 412
                 55666776666633344444556677777777755554444234444444 PP

  == domain 5  score: 38.1 bits;  conditional E-value: 1.2e-12
      FKBP_N   2 dkvsYalGlsigqq.......lkaqgkeldkdavlaGlkdalkgkskltdeeiqevlqalqeklqekqeeeaeknkaegeaFlaenkkkeGVk 87 
                 ++ +Ya+G+s+g++        ++qg ++d  +vl+G++da+ g+ +l ++e +++l  + +++ ++ ++  +kn  +g+++ ++++ k++V+
  CTQ26462.1 416 EQQAYAIGASMGSEalnvlttRRTQGVTVDAGLVLQGIEDAFRGQLRLGEQERNKALFDVSQQVFQNLNKIEQKNISAGKKYQQAFARKKDVV 508
                 5789********99999998877889**********************9999999999999988888889*********************97 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.5    0.0001      0.21       9      31 ..      81     103 ..      79     104 .. 0.89
   2 ?    1.3   0.0      0.16   3.3e+02       9      18 ..     123     132 ..     121     143 .. 0.78
   3 !    9.3   0.5    0.0005         1      15      31 ..     379     395 ..     378     396 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
   PKcGMP_CC   9 RIRELEkrlaekdeEIqELrskL 31 
                 RI   ++++a+kd+ Iq+L+ +L
  CTQ26462.1  81 RITSQQAAIAQKDKLIQQLKKQL 103
                 66667999**************9 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.16
   PKcGMP_CC   9 RIRELEkrla 18 
                 RI EL+ +l+
  CTQ26462.1 123 RINELQVALS 132
                 9*****9996 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0005
   PKcGMP_CC  15 krlaekdeEIqELrskL 31 
                 ++l+ k++EI+ Lr++L
  CTQ26462.1 379 AQLRMKEDEIELLRTQL 395
                 699*************9 PP

>> DUF3475  Domain of unknown function (DUF3475)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.018        36      29      57 .]     204     232 ..     192     232 .. 0.84
   2 ?    5.3   0.1     0.011        21      35      57 .]     238     260 ..     232     260 .. 0.89
   3 ?   -2.1   0.0       2.1   4.1e+03      40      57 .]     271     288 ..     269     288 .. 0.79
   4 !    5.8   0.2    0.0071        14      30      57 .]     289     316 ..     276     316 .. 0.85
   5 ?    1.8   0.1      0.13   2.6e+02      35      57 .]     322     344 ..     317     344 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.018
     DUF3475  29 reeilrseGVrkLvSkDedfLlrLalaEk 57 
                 +e+   +e V++L+++ +    rLa+aEk
  CTQ26462.1 204 KEKQAALEQVKALNADKQPLTTRLAAAEK 232
                 67778899********************7 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.011
     DUF3475  35 seGVrkLvSkDedfLlrLalaEk 57 
                 +e V++L+++ ++  +rLa+aEk
  CTQ26462.1 238 LEQVKALNADKQSLTIRLAAAEK 260
                 789*******************7 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.1
     DUF3475  40 kLvSkDedfLlrLalaEk 57 
                 +L+++ +    rLa+aEk
  CTQ26462.1 271 ALNADKQPLATRLAAAEK 288
                 577777777889****97 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0071
     DUF3475  30 eeilrseGVrkLvSkDedfLlrLalaEk 57 
                 e+   +e V++L+++ ++  +rLa+aEk
  CTQ26462.1 289 EKQAVLEQVKALNADKQSLTIRLAAAEK 316
                 55566899*******************7 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.13
     DUF3475  35 seGVrkLvSkDedfLlrLalaEk 57 
                 ++ V++L+++ ++   rLa+a+k
  CTQ26462.1 322 LDQVKALNADKQSLSTRLAAADK 344
                 5679*****************97 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   8.4       4.1   8.1e+03     110     166 ..      41      97 ..      34      98 .. 0.60
   2 !   15.7  18.1   3.5e-06    0.0071      26     129 ..      94     199 ..      91     205 .. 0.92
   3 !   10.0  19.6    0.0002      0.39      46     132 ..     154     244 ..     148     252 .. 0.58
   4 ?    3.8  20.0     0.016        32      33     131 ..     197     299 ..     194     305 .. 0.87
   5 ?    2.5  13.0     0.041        81      31     119 ..     251     343 ..     248     347 .. 0.82
   6 ?   -3.6   0.2         3     6e+03      62      81 ..     380     399 ..     370     409 .. 0.56
   7 ?   -2.3   0.8       1.1   2.3e+03     124     152 ..     470     498 ..     461     507 .. 0.45

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 4.1
         GAS 110 vleqrfekvekerdelykkfeaaiqevqqktglknllLekklkalqeelEkkeaqle 166
                 + +q  ++ +++    ++++e+      +ktg +   L+k++++ q+++ +k++ ++
  CTQ26462.1  41 QTQQSQAQEKNDAASAKQTQESRQSADNKKTGTNTSQLQKRITSQQAAIAQKDKLIQ 97 
                 333333333334444444455555556778888888888888888888888887766 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 3.5e-06
         GAS  26 elIkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkq..lknyekdkqslknlkarlkelekelkdlkwehevleqrfekveker 122
                 +lI++lK++++   + +++  +e ++++++ ++l+  L +a++e+e L k+  + + ++ +qs +++++++++l+ ++++ + e++ l+  f+++ k++
  CTQ26462.1  94 KLIQQLKKQLAATPQTDTAGANEQAALNKRINELQVALSAATAEKEALIKKagVVQNNNLQQSQAAARQQIQQLTTQIQQAEAENKRLSASFTTLNKDK 192
                 69**********************************************997225777888999999********************************* PP

         GAS 123 delykkf 129
                  +l  + 
  CTQ26462.1 193 HALMTQL 199
                 9997765 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.0002
         GAS  46 ekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslk....nlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaa 132
                 ++  +++ q+ ++l+ ++++ae+e+++L +   + +kdk +l+    +++++ + + +++k+l  +++ l  r++++eke++++ ++ +a 
  CTQ26462.1 154 QQSQAAARQQIQQLTTQIQQAEAENKRLSASFTTLNKDKHALMtqlaATEKEKQAALEQVKALNADKQPLTTRLAAAEKEKQAVLEQVKAL 244
                 4444556666777777777777777777777777777776543111144555555666677777777777777777777777766665543 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.016
         GAS  33 eeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslk....nlkarlkelekelkdlkwehevleqrfekvekerdelyk 127
                  +++  +k+++++  ++++++++++ l+  L +ae+e++   +q+k  + dkqsl+    ++++  + + ++ k+l  +++ l  r++++eke++++ +
  CTQ26462.1 197 TQLAATEKEKQAALEQVKALNADKQPLTTRLAAAEKEKQAVLEQVKALNADKQSLTirlaAAEKAQQAALDQAKALNADKQPLATRLAAAEKEKQAVLE 295
                 5889999999*******************************************97622215666667777899***********************999 PP

         GAS 128 kfea 131
                 + +a
  CTQ26462.1 296 QVKA 299
                 8776 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.041
         GAS  31 lKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslk....nlkarlkelekelkdlkwehevleqrfekve 119
                 l   ++  +k ++++  + ++++++++ l   L +ae+e++   +q+k  + dkqsl+    ++++  + + +++k+l  ++++l+ r++++ 
  CTQ26462.1 251 LTIRLAAAEKAQQAALDQAKALNADKQPLATRLAAAEKEKQAVLEQVKALNADKQSLTirlaAAEKTQQAALDQVKALNADKQSLSTRLAAAD 343
                 555678899999*******************************************97621115566666666789999999999999988765 PP

  == domain 6  score: -3.6 bits;  conditional E-value: 3
         GAS  62 pLkkaeeeveeLrkqlknye 81 
                 +L+  e e+e Lr ql  ++
  CTQ26462.1 380 QLRMKEDEIELLRTQLSVQS 399
                 34444444444444444444 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 1.1
         GAS 124 elykkfeaaiqevqqktglknllLekklk 152
                 +      + +++   k++ kn+   kk +
  CTQ26462.1 470 KALFDVSQQVFQNLNKIEQKNISAGKKYQ 498
                 33333333333333333333333333333 PP

>> DUF2714  Protein of unknown function (DUF2714)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.4      0.59   1.2e+03      11      50 ..     141     180 ..     132     213 .. 0.68
   2 ?   13.2   0.1   3.6e-05     0.071      35     103 ..     491     562 ..     472     582 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.59
     DUF2714  11 fvsyeklinsvlLksnlgfsseiykkfkekleeaikkkld 50 
                 +++   ++++  L++++++  ++++++  ++++a ++++ 
  CTQ26462.1 141 LIKKAGVVQNNNLQQSQAAARQQIQQLTTQIQQAEAENKR 180
                 5555556666667777777777777777777776555443 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 3.6e-05
     DUF2714  35 kkfkekleeaikkkldlvfksFv...isfnknlrfsskklvPiviekessnveainlsssndeklnkflksl 103
                  +  +k+++a+++k+d+vfk+ v   + +  + + s ++lv +vi++  ++   in ++ +d+ l + l  +
  CTQ26462.1 491 ISAGKKYQQAFARKKDVVFKEGVysrVDYPGKGKISGNDLVTVVIKEMLTDGTVINDMEAKDQALTQKLDAY 562
                 455799***************99444559999***************9999999999999999998888777 PP

>> SSURE  Fibronectin-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.044        87      32      48 ..     202     218 ..     195     227 .. 0.81
   2 ?    7.2   0.1    0.0021       4.1      32      57 ..     230     255 ..     226     260 .. 0.86
   3 ?    0.9   0.4       0.2     4e+02      32      47 ..     258     273 ..     256     283 .. 0.80
   4 ?    7.2   0.1    0.0021       4.2      32      57 ..     286     311 ..     279     315 .. 0.86
   5 ?    3.4   0.4     0.033        65      32      48 ..     314     330 ..     310     341 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.044
       SSURE  32 aGkegqalldqlkangt 48 
                 + ke+qa l+q+ka ++
  CTQ26462.1 202 TEKEKQAALEQVKALNA 218
                 679**********9654 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0021
       SSURE  32 aGkegqalldqlkangtqtykatvkv 57 
                 a ke+qa+l+q+ka +++  + t+++
  CTQ26462.1 230 AEKEKQAVLEQVKALNADKQSLTIRL 255
                 78************999988888886 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.2
       SSURE  32 aGkegqalldqlkang 47 
                 a k +qa ldq ka +
  CTQ26462.1 258 AEKAQQAALDQAKALN 273
                 67999********954 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0021
       SSURE  32 aGkegqalldqlkangtqtykatvkv 57 
                 a ke+qa+l+q+ka +++  + t+++
  CTQ26462.1 286 AEKEKQAVLEQVKALNADKQSLTIRL 311
                 78************999988888876 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.033
       SSURE  32 aGkegqalldqlkangt 48 
                 a k +qa ldq+ka ++
  CTQ26462.1 314 AEKTQQAALDQVKALNA 330
                 6799*********9543 PP

>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   4.6     0.089   1.8e+02      10      87 ..      73     150 ..      64     157 .. 0.89
   2 ?    4.1   5.1     0.026        52      31      94 ..     162     225 ..     143     231 .. 0.60
   3 ?   12.5  19.0   6.7e-05      0.13      10     179 ..     197     364 ..     163     371 .. 0.57

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.089
     zf-C4H2  10 leleklknklakevealekeekcleeykkelelLeqEkmaHveeLrlIhaDinalEsvikeaeeekekslekakklye 87 
                 ++ ++l+++++++  a+ +++k +++ kk+l    q  +a ++e   +++ in+l   +  a  eke  ++ka  + +
  CTQ26462.1  73 TNTSQLQKRITSQQAAIAQKDKLIQQLKKQLAATPQTDTAGANEQAALNKRINELQVALSAATAEKEALIKKAGVVQN 150
                 56789999**********************************************************999999876655 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.026
     zf-C4H2  31 kcleeykkelelLeqEkmaHveeLrlIhaDinalEsvikeaeeekekslekakklyeeykklke 94 
                 + +++ + ++++ e E +  +     +++D++al + +  +e+ek+ +le++k l ++ ++l +
  CTQ26462.1 162 QQIQQLTTQIQQAEAENKRLSASFTTLNKDKHALMTQLAATEKEKQAALEQVKALNADKQPLTT 225
                 4455555555555555555555555566666666666666666666666666665555555554 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 6.7e-05
     zf-C4H2  10 leleklknklakevealekeekcleeykkelelLeqEkmaHveeLrlIhaDinalEsvikeaeeekekslekakklyeeykklkeevnelrse..lgle 106
                 ++l   +++ ++++e++++ +   +  +  l   e+Ek+a +e+++ ++aD+++l   +  ae++++ +l++ak l ++ ++l +++    +e    le
  CTQ26462.1 197 TQLAATEKEKQAALEQVKALNADKQPLTTRLAAAEKEKQAVLEQVKALNADKQSLTIRLAAAEKAQQAALDQAKALNADKQPLATRLAAAEKEkqAVLE 295
                 333333333333444444444444444445555667777777777777777777777777777777777777777777777777766655544445666 PP

     zf-C4H2 107 kledleeeeeellkeeifekqklkaaavelkkesstapappapptsllskssqapsapstatasfrqqpPPMK 179
                 +++ l+ ++++l + ++ + +k+++a +  + +  +a ++  + +++l+++ +ap+ p + +a+ +++pP M 
  CTQ26462.1 296 QVKALNADKQSL-TIRLAAAEKTQQA-ALDQVKALNADKQ--SLSTRLAAADKAPHGPANDAAAPKNEPPEMA 364
                 666666655554.3333222222222.2222233333333..33455555668888899999********995 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       4.5     9e+03      26      35 ..      90      99 ..      74     106 .. 0.61
   2 ?    2.0   1.9      0.12   2.4e+02      30      70 ..     140     178 ..     114     179 .. 0.74
   3 ?    5.6   5.0    0.0087        17      13      69 ..     149     205 ..     135     207 .. 0.92
   4 ?   13.4   5.6   3.3e-05     0.067       5      69 ..     169     233 ..     165     235 .. 0.94
   5 ?    7.5   2.7    0.0023       4.5      21      68 ..     213     260 ..     205     263 .. 0.89
   6 ?    8.3   1.8    0.0013       2.6      22      69 ..     270     317 ..     261     319 .. 0.92
   7 ?    4.0   2.4     0.028        56      14      65 ..     290     341 ..     287     345 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.5
    JIP_LZII 26 vvkddLIarv 35
                 +kd LI+++
  CTQ26462.1 90 AQKDKLIQQL 99
                3455555544 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.12
    JIP_LZII  30 dLIarvdeLtsereiLreEleslqkakerlesrikelEeel 70 
                  LI++      +++ L++   + +++ ++l ++i+++E+e 
  CTQ26462.1 140 ALIKKAGVV--QNNNLQQSQAAARQQIQQLTTQIQQAEAEN 178
                 555555443..456689999999999999999999999885 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0087
    JIP_LZII  13 ENteLletknaLnvvkddLIarvdeLtsereiLreEleslqkakerlesrikelEee 69 
                 +N++L++ + a   + + L +++ +   e++ L+  +++l+k k +l ++++++E+e
  CTQ26462.1 149 QNNNLQQSQAAARQQIQQLTTQIQQAEAENKRLSASFTTLNKDKHALMTQLAATEKE 205
                 79999999999999999*************************************998 PP

  == domain 4  score: 13.4 bits;  conditional E-value: 3.3e-05
    JIP_LZII   5 kevenLikENteLletknaLnvvkddLIarvdeLtsereiLreEleslqkakerlesrikelEee 69 
                  ++++  +EN++L +    Ln  k  L++++    +e+++  e +++l++ k+ l +r++++E+e
  CTQ26462.1 169 TQIQQAEAENKRLSASFTTLNKDKHALMTQLAATEKEKQAALEQVKALNADKQPLTTRLAAAEKE 233
                 67888899*******************************************************98 PP

  == domain 5  score: 7.5 bits;  conditional E-value: 0.0023
    JIP_LZII  21 knaLnvvkddLIarvdeLtsereiLreEleslqkakerlesrikelEe 68 
                   aLn  k+ L +r+    +e++++ e +++l++ k++l  r++++E+
  CTQ26462.1 213 VKALNADKQPLTTRLAAAEKEKQAVLEQVKALNADKQSLTIRLAAAEK 260
                 469****************************************99997 PP

  == domain 6  score: 8.3 bits;  conditional E-value: 0.0013
    JIP_LZII  22 naLnvvkddLIarvdeLtsereiLreEleslqkakerlesrikelEee 69 
                  aLn  k+ L +r+    +e++++ e +++l++ k++l  r++++E++
  CTQ26462.1 270 KALNADKQPLATRLAAAEKEKQAVLEQVKALNADKQSLTIRLAAAEKT 317
                 59*****************************************99986 PP

  == domain 7  score: 4.0 bits;  conditional E-value: 0.028
    JIP_LZII  14 NteLletknaLnvvkddLIarvdeLtsereiLreEleslqkakerlesrike 65 
                  +  le   aLn  k+ L  r+    + +++  + +++l++ k++l +r+++
  CTQ26462.1 290 KQAVLEQVKALNADKQSLTIRLAAAEKTQQAALDQVKALNADKQSLSTRLAA 341
                 4445555566777777777777776666666666677777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3738  (0.208489); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                       205  (0.011434); expected 17.9 (0.001)
Passed Fwd filter:                        96  (0.00535445); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 2.01u 0.37s 00:00:02.38 Elapsed: 00:00:00.58
# Mc/sec: 3207.39
//
Query:       CTQ26463.1  [L=136]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1271  (0.0708907); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1014.99
//
Query:       CTQ26464.1  [L=119]
Description: hypothetical protein CH1034_120102 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-09   37.7   0.1    2.4e-09   37.3   0.1    1.1  1  T2SS_PulS_OutS  Type II secretion system pilotin lipoprotein 


Domain annotation for each model (and alignments):
>> T2SS_PulS_OutS  Type II secretion system pilotin lipoprotein (PulS_OutS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   1.3e-13   2.4e-09      19      99 ..      28     109 ..      18     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.3e-13
                     HHHHHHHHHHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHTT--GGG-TT..HHHHHHHHHHHHHHSSS-HHHHHHHHHH CS
  T2SS_PulS_OutS  19 aneqieqlsslvaaikYLkqkCnrsdLpddatilkvalkvakqrgWdtdeyqs..lpqrserlYqgLlkdstpkekqCsslnk 99 
                     ++ + e+++ l a   +Lk+ C++++Lp+  +i +  +  a+q +Wd ++y+s  +    e +Y+ L   + p +k+C  l +
      CTQ26464.1  28 SESEAEDMADLTAVFVFLKNDCGYQNLPNT-QIRRALVFFAQQNQWDLSNYDSynMKALGEDSYRDLSGINIPTAKKCKALAR 109
                     566789**********************74.577778889***********993345668*********99*******99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 999.15
//
Query:       CTQ26465.1  [L=532]
Description: multicopper oxidase (laccase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-32  111.0   0.1    6.6e-32  110.0   0.1    1.6  1  Cu-oxidase_3  Multicopper oxidase
    2.4e-27   95.3   4.7    9.5e-25   86.9   2.7    2.4  2  Cu-oxidase_2  Multicopper oxidase
    3.8e-10   40.1   0.0    2.9e-06   27.5   0.0    3.4  3  Cu-oxidase    Multicopper oxidase
      5e-05   23.0   0.4      5e-05   23.0   0.4    2.3  2  TAT_signal    TAT (twin-arginine translocation) pathway signa


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   0.1   1.5e-35   6.6e-32      13     118 ..      62     166 ..      51     167 .. 0.92

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 1.5e-35
                   ESEEEEEECTSSBS-EEEEETT-EEEEEEEE-SSS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE--TT...HHH. CS
  Cu-oxidase_3  13 terevitvNgqfpgptievregdtvvvnvtNkldentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhshlsl...qqa. 105
                    +++++++Ng+++gp++++++g+tv+v++tN+l e+t++hwhGl+++++     v+g++q +i+pg+++t +ft +q+a+t+w+h+h ++   +q+ 
    CTQ26465.1  62 LNATTWGYNGSLLGPALQLTQGKTVTVDITNQLAEETTLHWHGLEVPGE-----VDGGPQGVIAPGATRTVSFTPTQRAATCWFHPHQHGstgRQVa 153
                   45899********************************************.....9***********************************9*96666 PP

                   TT-EEEEEEE-HH CS
  Cu-oxidase_3 106 aGlaGaiiiedke 118
                   +GlaG+++ied+e
    CTQ26465.1 154 MGLAGLVLIEDEE 166
                   **********986 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0005       2.2      33      63 ..      76     106 ..      43     155 .. 0.76
   2 !   86.9   2.7   2.1e-28   9.5e-25      23     133 ..     422     532 .]     397     532 .] 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0005
                   EEEEEETTEEEEEEEEE-SSS-EEEEESS-E CS
  Cu-oxidase_2  33 nvitlpkgevveiviqnntklpHPfHlHGhd 63 
                   ++++l +g++v + i+n+   + ++H+HG +
    CTQ26465.1  76 PALQLTQGKTVTVDITNQLAEETTLHWHGLE 106
                   6789999**********************85 PP

  == domain 2  score: 86.9 bits;  conditional E-value: 2.1e-28
                   E....ETCCTTTSSEEEEEETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-T.TEEEEEEEES.S-EE. CS
  Cu-oxidase_2  23 t....ngeefsentnvitlpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvpp.ggwvairfkadnpGv. 112
                   +    ng+ f++n++++ +  g+++++vi +++++  HPfH+HG++f++l++++++           ++ +++dtv+v++  ++v + f+   p   
    CTQ26465.1 422 NanriNGKAFDMNEPMFAAARGQYERWVISGKGDMmLHPFHIHGTQFRILSENGKP--------PAAHRRGWKDTVRVEGdVSEVLVKFDHPAPKEf 510
                   134569*************************999989*************888888........4458899*******8756777777887777668 PP

                   .EEEEESSHHHHHTT-EEEEEE CS
  Cu-oxidase_2 113 .wllHCHilwHldqGmalqfvv 133
                    ++ HCH+l+H+d+Gm+l f+v
    CTQ26465.1 511 aYMAHCHLLEHEDTGMMLGFTV 532
                   8*****************9975 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.19   8.6e+02      55      81 ..      71      97 ..      49     102 .. 0.75
   2 !   27.5   0.0   6.4e-10   2.9e-06      63     126 ..     224     289 ..     180     310 .. 0.86
   3 !    7.7   0.0    0.0008       3.6      38     152 ..     423     529 ..     394     532 .] 0.74

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.19
                TTTTSGGGEEEEETTEEEEEEEESSS- CS
  Cu-oxidase 55 dgaslatltvepgktyrlriinvsadd 81
                ++   + l++++gkt+ + i n+ a++
  CTQ26465.1 71 GSLLGPALQLTQGKTVTVDITNQLAEE 97
                445668999*********999986655 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 6.4e-10
                 EEEEETTEEEEEEEESSS-BEEEEETSB.-EEEEEETCETTS.EEEESCEEE-TTEEEEEEEEE-S CS
  Cu-oxidase  63 tvepgktyrlriinvsaddslnfsIeGH.kltVvevDgvyve.pvevdsldIavGqrysvlvtanq 126
                 +  p+   rlr+ n+ +  slnf+  +   l Vv++Dg     pv+vd+l + +G+r++vlv++++
  CTQ26465.1 224 HASPRGWLRLRLLNGCNARSLNFATSDKrPLYVVASDGGLLAePVKVDELPVLMGERFEVLVDTSD 289
                 55666678*******************989********99988*******************9975 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0008
                 EEEETTBSS.......CTTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEETCETTS...EEEESCEEE-TTEEEEEEEEE-S.SSEEEE CS
  Cu-oxidase  38 avlingkggfnatladkdgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvevDgvyve...pvevdsldIavGqrysvlvtanq.apgnYw 132
                 a  ing +          + + + ++  +g+ +r+ i+  + +  ++f I+G ++ +    g++         d++++  G   +vlv+++  ap++++
  CTQ26465.1 423 ANRING-KA--------FDMNEPMFAAARGQYERWVISGKGDMMLHPFHIHGTQFRILSENGKPPAahrRGWKDTVRV-EGDVSEVLVKFDHpAPKEFA 511
                 444555.22........2355789999999999999999999999************999999987532233466666.4999*******9966***** PP

                 EEEEGSSSCHHHHTTSEEEE CS
  Cu-oxidase 133 ivasgrsnlieafengtaaa 152
                 ++a  + +l e+ ++g+ ++
  CTQ26465.1 512 YMA--HCHLLEHEDTGMMLG 529
                 ***..555677777777655 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.4   1.1e-08     5e-05       2      23 ..       1      22 [.       1      25 [. 0.90
   2 ?   -1.8   0.8      0.73   3.3e+03      14      24 ..     334     344 ..     333     346 .. 0.65

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.1e-08
  TAT_signal  2 lSRRdFLKgsAAaaAAaalggc 23
                + RRdFLK +AA++ A al+ +
  CTQ26465.1  1 MQRRDFLKLTAAVGMASALPLW 22
                67*****************976 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.73
  TAT_signal  14 aaAAaalggca 24 
                 +aA+ al++++
  CTQ26465.1 334 LAALPALPSLT 344
                 57777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 4223.69
//
Query:       CTQ26466.1  [L=796]
Description: glucose dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-59  193.3   0.7    1.6e-08   34.0   0.0    8.2  8  PQQ       PQQ enzyme repeat
    4.5e-21   75.5   0.0    2.3e-06   27.3   0.0    4.2  4  PQQ_2     PQQ-like domain
    3.2e-07   30.6  13.0        2.9    8.5   0.0    8.4  8  PQQ_3     PQQ-like domain


Domain annotation for each model (and alignments):
>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.32   1.9e+03      21      30 ..     195     204 ..     195     207 .. 0.85
   2 !   34.0   0.0   2.7e-12   1.6e-08       1      36 [.     225     260 ..     225     262 .. 0.90
   3 !   22.0   0.0   1.7e-08    0.0001       2      33 ..     289     320 ..     288     324 .. 0.88
   4 !   23.1   0.0   7.9e-09   4.7e-05       6      34 ..     358     387 ..     353     391 .. 0.85
   5 !   28.0   0.0   2.3e-10   1.4e-06      11      37 ..     442     468 ..     437     469 .. 0.91
   6 !   16.0   0.0   1.4e-06    0.0085       2      34 ..     487     519 ..     486     522 .. 0.92
   7 !   30.2   0.0   4.5e-11   2.7e-07       5      36 ..     664     696 ..     660     698 .. 0.91
   8 !   29.0   0.0   1.1e-10   6.4e-07       1      37 [.     721     758 ..     721     759 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.32
                 CEEEEEESSS CS
         PQQ  21 kvlWrfktgg 30 
                 k+ W+f+tg+
  CTQ26466.1 195 KEAWVFRTGD 204
                 789*****97 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 2.7e-12
                 TEEEEEETTSEEEEEETTTCCEEEEEESSSCGSSES CS
         PQQ   1 gvvylgsadGylyAlDadTGkvlWrfktggpvlslp 36 
                 ++++l++a+ +l+AlDa+TGk++W+f+++ + + ++
  CTQ26466.1 225 DTLFLCTAHQRLFALDAATGKEKWHFDPQLNADPSF 260
                 689*************************98877665 PP

  == domain 3  score: 22.0 bits;  conditional E-value: 1.7e-08
                 EEEEEETTSEEEEEETTTCCEEEEEESSSCGS CS
         PQQ   2 vvylgsadGylyAlDadTGkvlWrfktggpvl 33 
                 +++l+ +dG+l+A++ad+Gk++ +f ++g  +
  CTQ26466.1 289 RIILPVNDGRLFAVNADNGKLCETFANKGILN 320
                 578889********************999765 PP

  == domain 4  score: 23.1 bits;  conditional E-value: 7.9e-09
                 E.ETTSEEEEEETTTCCEEEEEESSSCGSS CS
         PQQ   6 g.sadGylyAlDadTGkvlWrfktggpvls 34 
                 +  + G+++ +D++TGk+lW f++g+++ +
  CTQ26466.1 358 TrEPSGVIRGFDVNTGKLLWAFDPGAKDPN 387
                 55689********************99976 PP

  == domain 5  score: 28.0 bits;  conditional E-value: 2.3e-10
                 EEEEEETTTCCEEEEEESSSCGSSESE CS
         PQQ  11 ylyAlDadTGkvlWrfktggpvlslpi 37 
                  ++Al+a+TGk+ W+++t++++l++++
  CTQ26466.1 442 SIVALNATTGKLAWSYQTVHHDLWDMD 468
                 699*********************975 PP

  == domain 6  score: 16.0 bits;  conditional E-value: 1.4e-06
                 EEEEEETTSEEEEEETTTCCEEEEEESSSCGSS CS
         PQQ   2 vvylgsadGylyAlDadTGkvlWrfktggpvls 34 
                 v+y++ + G+++ lD+++G+++   ++++++++
  CTQ26466.1 487 VIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQG 519
                 79999******************9999999887 PP

  == domain 7  score: 30.2 bits;  conditional E-value: 4.5e-11
                 EE.ETTSEEEEEETTTCCEEEEEESSSCGSSES CS
         PQQ   5 lg.sadGylyAlDadTGkvlWrfktggpvlslp 36 
                 +  +a+Gy+ AlD++T++v+W++++g p +slp
  CTQ26466.1 664 CKqPAWGYISALDLKTNEVVWKKRIGTPQDSLP 696
                 66699**************************98 PP

  == domain 8  score: 29.0 bits;  conditional E-value: 1.1e-10
                 TEEEEE.ETTSEEEEEETTTCCEEEEEESSSCGSSESE CS
         PQQ   1 gvvylg.sadGylyAlDadTGkvlWrfktggpvlslpi 37 
                 +v+++g +ad+yl+A+++++G++lW+ ++++  +++p+
  CTQ26466.1 721 NVLFIGaTADNYLRAYNMSNGEKLWEARLPAGGQATPM 758
                 689**************************999998887 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   3.9e-10   2.3e-06      25     147 ..     214     378 ..     195     389 .. 0.72
   2 !    5.6   0.0    0.0017        10       2      25 ..     362     386 ..     361     405 .. 0.72
   3 !   16.4   0.0   8.8e-07    0.0053      87     146 ..     442     509 ..     422     530 .. 0.80
   4 !   24.8   0.0   2.4e-09   1.4e-05       3      86 ..     670     774 ..     669     780 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 3.9e-10
       PQQ_2  25 lgggvsravlsggtlfvatgggrlvaldaatGkvlWettlegpvvga..................................plvaegrvvvvasdg.ql 88 
                 ++++v ++   g+tlf  t   rl aldaatGk++W ++++  +  +                                    v++gr+++v++d+  l
  CTQ26466.1 214 ITNEV-TPIKVGDTLFLCTAHQRLFALDAATGKEKWHFDPQLNA--DpsfqhvtcrgvsyheakadnapadvvadcprriiLPVNDGRLFAVNADNgKL 309
                 45555.6788899**************************85543..22466779999999999999999998888888888788888888888888888 PP

       PQQ_2  89 ialdaedGkrlWstqqrs......eepaelrssaspavagdtvvvges..........sgklvaldpkdGkvlWe 147
                 ++  a+ G +  +t          e      +++ p+++++t+v++++          sg + ++d+ +Gk+lW 
  CTQ26466.1 310 CETFANKGILNLQTNMPVttpgmyE------PTSPPIITDKTIVIAGAvtdnfstrepSGVIRGFDVNTGKLLWA 378
                 8888888888777333333333222......333344444444444444455555555****************5 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0017
       PQQ_2   2 egvvsaldaatGaelWrvdl.arpl 25 
                  gv++ +d +tG++lW +d+ a++ 
  CTQ26466.1 362 SGVIRGFDVNTGKLLWAFDPgAKDP 386
                 5889999999999999998844333 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 8.8e-07
       PQQ_2  87 qlialdaedGkrlWstqqrse.epaelrssaspava.....gdtvvvges...sgklvaldpkdGkvlW 146
                 +++al+a++Gk++Ws +q+ +    ++  +++p++a     g+tv v  +    g++ +ld ++G+++ 
  CTQ26466.1 442 SIVALNATTGKLAWS-YQTVHhDLWDMDMPSQPTLAdievnGKTVPVIYApakTGNIFVLDRRNGELVV 509
                 789************.8888835555888888888888999888766666666************9975 PP

  == domain 4  score: 24.8 bits;  conditional E-value: 2.4e-09
       PQQ_2   3 gvvsaldaatGaelWrvdlar...........p........lgggvsravlsggtlfva.tgggrlvaldaatGkvlWettlegpvvga...plvaegr 78 
                 g +sald +t +++W++++++           +          gg+   + +g++lf++ t  + l a++ ++G+ lWe++l++  +++    +v++++
  CTQ26466.1 670 GYISALDLKTNEVVWKKRIGTpqdslpfpmpvKlpftmgmpMLGGP--ISTAGNVLFIGaTADNYLRAYNMSNGEKLWEARLPAGGQATpmtYEVNGKQ 766
                 689**************77443555555555505555556677777..55589*****9899999*****************99999995544899999 PP

       PQQ_2  79 vvvvasdg 86 
                  vv +++g
  CTQ26466.1 767 YVVISAGG 774
                 99999877 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3       1.5   9.2e+03       5      23 ..     110     134 ..     109     139 .. 0.59
   2 !    8.5   0.0   0.00049       2.9      20      40 .]     223     243 ..     195     243 .. 0.83
   3 !    4.5   0.0    0.0089        53       1      39 [.     244     305 ..     244     306 .. 0.59
   4 ?    0.6   0.1      0.14   8.6e+02       9      40 .]     329     372 ..     326     372 .. 0.76
   5 ?   -0.2   0.1      0.27   1.6e+03       1      10 [.     373     382 ..     373     450 .. 0.56
   6 ?    2.7   0.0     0.031   1.9e+02       1      39 [.     451     503 ..     451     504 .. 0.57
   7 !    8.3   0.0   0.00057       3.4       3      38 ..     682     738 ..     681     740 .. 0.70
   8 !    5.9   0.1    0.0033        20       1      27 [.     741     771 ..     741     780 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.5
       PQQ_3   5 Wsv.qlpg.pvnssp....avdggl 23 
                 W++ ++p+  +++++    +++gg 
  CTQ26466.1 110 WRRlPVPSaGAVGALvvalLISGGM 134
                 7777777743334444544556765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00049
       PQQ_3  20 dgglvyvgtgdGtlyAlDaet 40 
                 +g++++  t   +l+AlDa+t
  CTQ26466.1 223 VGDTLFLCTAHQRLFALDAAT 243
                 69*****************98 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0089
       PQQ_3   1 GevlWsv..qlpgpvnssp.......................avdg..glvyvgtgdGtlyAlDae 39 
                 G+++W +  ql     + p                       +v++  +++     dG+l+A++a+
  CTQ26466.1 244 GKEKWHFdpQLN----ADPsfqhvtcrgvsyheakadnapadVVADcpRRIILPVNDGRLFAVNAD 305
                 666666644222....2222222344444555555555557777776689999999********97 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.14
       PQQ_3   9 lpg..pvnsspavdgglvyvgtg..........dGtlyAlDaet 40 
                 +pg  + +s+p + + ++++++            G ++ +D +t
  CTQ26466.1 329 TPGmyEPTSPPIITDKTIVIAGAvtdnfstrepSGVIRGFDVNT 372
                 6666544588899****999999888888888888888888765 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.27
       PQQ_3   1 GevlWsvqlp 10 
                 G++lW+++ +
  CTQ26466.1 373 GKLLWAFDPG 382
                 6777777322 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.031
       PQQ_3   1 GevlWsvql..pg....pvnsspavd.....ggl...vyvgtgdGtlyAlDae 39 
                 G++ Ws+q+  ++    +  s+p+++     g +   +y+ +  G+++ lD +
  CTQ26466.1 451 GKLAWSYQTvhHDlwdmDMPSQPTLAdievnGKTvpvIYAPAKTGNIFVLDRR 503
                 88999996543222224444555554233323324548888888888888876 PP

  == domain 7  score: 8.3 bits;  conditional E-value: 0.00057
       PQQ_3   3 vlWsvqlpgpvnssp....................avdgglvyvgtg.dGtlyAlDa 38 
                 v+W+++++ p  s p                     ++g+++++g++ d+ l+A++ 
  CTQ26466.1 682 VVWKKRIGTPQDSLPfpmpvklpftmgmpmlggpiSTAGNVLFIGATaDNYLRAYNM 738
                 56666555554444455555555666666666668*******************986 PP

  == domain 8  score: 5.9 bits;  conditional E-value: 0.0033
       PQQ_3   1 GevlWsvqlpgpvnsspavd..gg..lvyvg 27 
                 Ge lW+ +lp+ ++++p ++  +g  +v+++
  CTQ26466.1 741 GEKLWEARLPAGGQATPMTYevNGkqYVVIS 771
                 99*********99999944312341134444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.38
# Mc/sec: 6293.38
//
Query:       CTQ26467.1  [L=178]
Description: hypoxanthine phosphoribosyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-24   86.8   0.0    1.3e-24   86.6   0.0    1.0  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.016   14.6   0.0    1.1  1  UPRTase       Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0   1.4e-28   1.3e-24      10     158 ..      13     160 ..       8     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 1.4e-28
                   -EEEEEEETTEEEEEE..--GGGEEEEEEETTTHHHHHHHHHHSTT-..EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHH CS
  Pribosyltran  10 aildavarlaaeilee..yngkpdvvvgiargGvpfakiladeLevp..layvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgT 102
                   +i++++a+l ++i+e+  + g++ v+vg +rg+++f  +l +e+ vp  ++++ +++y ++ s++   ++ +   l ed++gk VliV+Di+d+G+T
    CTQ26467.1  13 EIKARIAELGRQINEHyqNSGSEMVLVGLLRGSFMFMADLCREVQVPheVDFMTASSYGSGMSTTRDVKILKD--LDEDIRGKDVLIVEDIIDSGNT 107
                   5677999999999999777899**********************9988899**********999999888887..********************** PP

                   HHHHHHHHHCC-BSEEEEEEEEE-HHHHHHHHHH-TTS.....EEEEEEE-SEE-T CS
  Pribosyltran 103 llaalelLkekgpeevriavlvdkpateeevdknakrvfslspdnfvavvgfelds 158
                   l ++ e+L  ++p+++ i++l+dkp+++e      +++f +    +++vvg+++d+
    CTQ26467.1 108 LSKVREILSLREPKSLAICTLLDKPSRREVNVPVEYVGFAIP---DEFVVGYGIDY 160
                   ***************************************888...99999999986 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.8e-06     0.016      56     147 ..      22     118 ..       2     134 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-06
     UPRTase  56 gkeysg.elldeekialVpilRaGeg.meealrel.lpea.rvghlglqree.etlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLker 147
                 g++ ++  +++ ++++lV +lR+    m++ +re+ +p+   ++ +  + +  +t + v +++ L ++i+ + vl+++ +i +G+++ ++ ++L  r
  CTQ26467.1  22 GRQINEhYQNSGSEMVLVGLLRGSFMfMADLCREVqVPHEvDFMTASSYGSGmSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLR 118
                 5555552345557899999999764414445555433332355555555433367899*****************************9998888664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1376.12
//
Query:       CTQ26468.1  [L=220]
Description: carbonic anhydrase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-50  171.6   0.0    1.9e-50  171.2   0.0    1.1  1  Pro_CA    Carbonic anhydrase


Domain annotation for each model (and alignments):
>> Pro_CA  Carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   0.0   1.1e-54   1.9e-50       2     155 ..      38     187 ..      37     188 .. 0.94

  Alignments for each domain:
  == domain 1  score: 171.2 bits;  conditional E-value: 1.1e-54
                 EEEEETTTTS-HHHHTTS-TTSEEEEEETTG---TT-HHHHHHHHHHHHTS--SEEEEEEETT-HHHHHHHSHHCCSTTSSHHHHHHHHHHHHHHHCHH CS
      Pro_CA   2 lvigCsDSRvppelitdagpGdlFvvrnvgnlvppadssvlaaleyAvevlkvkhivVlGHskCGavkaalkaekseeeagaidkwlekirealekvee 100
                 l+igCsDSRvp+e +t+ +pG+lFv+rnv+nlv ++d ++l++++yAv+vl+v+hi+++GH++CG+v+aa+++     e g id+wl +ir++  k+++
  CTQ26468.1  38 LWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVEN----PELGLIDNWLLHIRDIWFKHSS 132
                 8*******************************************************************99974....3479***************999 PP

                 HHHTTSSHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHTTS.-EEEEEEEETTTTE CS
      Pro_CA 101 elesekekearerlleeenVaeqlenLlekpvvreavekgk.lkvhGlvydletGe 155
                  l ++  +e+r ++l+e+nV eq+ nL +++++++a+++g+ +++hG+ y +++G 
  CTQ26468.1 133 LLGEM-PEERRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQkVTIHGWAYGIHDGL 187
                 87775.688888999*************************99************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1609.58
//
Query:       CTQ26469.1  [L=308]
Description: putative transport protein (ABC superfamily, atp_bind) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-32  111.7   0.0    6.4e-32  110.9   0.0    1.4  1  ABC_tran        ABC transporter
    1.4e-13   51.3   2.0    6.8e-09   36.0   0.0    2.2  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    4.8e-05   23.3   0.0      0.067   12.9   0.1    2.1  2  AAA_15          AAA ATPase domain
     0.0022   17.5   0.1      0.059   12.8   0.1    2.2  1  SMC_N           RecF/RecN/SMC N terminal domain
     0.0032   17.2   0.1      0.007   16.1   0.1    1.5  1  AAA_29          P-loop containing region of AAA domain
     0.0037   17.9   0.1      0.015   16.0   0.1    2.1  1  DUF4162         Domain of unknown function (DUF4162)
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.029   14.1   0.0    1.7  1  AAA_30          AAA domain
      0.015   15.8   0.3      0.039   14.5   0.3    1.7  1  AAA_23          AAA domain
      0.018   14.6   0.0       0.04   13.5   0.0    1.5  1  AAA_27          AAA domain
      0.022   14.4   0.0      0.036   13.7   0.0    1.3  1  SRP54           SRP54-type protein, GTPase domain
      0.069   13.4   0.3       0.43   10.9   0.3    2.2  1  AAA_22          AAA domain
      0.073   12.4   0.0      0.088   12.1   0.0    1.2  1  RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
       0.09   13.7   0.0       0.25   12.2   0.0    1.8  1  CelD_N          Cellulase N-terminal ig-like domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   0.0   4.7e-35   6.4e-32       1     137 []      21     165 ..      21     165 .. 0.96

  Alignments for each domain:
  == domain 1  score: 110.9 bits;  conditional E-value: 4.7e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 l+ ++l++++g  +a++G+nGaGKSt + +++ l+++t+G++++ g dl++ +   +++++g +pqe +++p  tv++              e+ ++ e
  CTQ26469.1  21 LRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGQVNVFGYDLEK-DVVNAKRQLGLVPQEFNFNPFETVQQIvvnqagyygverkEALSRSE 118
                 57899*********************************************9.999*********************999999***999988777788** PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 k+l++l+l e++++++    + LSgG+k+r+++aral+ +pkll+lDEpta
  CTQ26469.1 119 KYLKQLDLWEKRNERA----RMLSGGMKRRLMIARALMHEPKLLILDEPTA 165
                 ***************9....*****************************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.9   1.5e-05      0.02       1      22 [.      33      54 ..      33      79 .. 0.82
   2 !   36.0   0.0   4.9e-12   6.8e-09     165     298 ..      76     195 ..      60     198 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                + +l GpNg+GKS+ + +++ l
  CTQ26469.1 33 FYALLGPNGAGKSTTIGIISSL 54
                5789***************998 PP

  == domain 2  score: 36.0 bits;  conditional E-value: 4.9e-12
      AAA_21 165 rigllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllli 263
                 ++++l ++  +f+f++  +  q  v++    + e    + ++e++ +  +++             ++  ar lS G+kr   +++  l   +  +ll++
  CTQ26469.1  76 AKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEALSRSEKYLKQLDLWEK-----------RNERARMLSGGMKRR-LMIARALMHEP--KLLIL 160
                 566666677777777777777777777777777777777777777777777766...........89999**********.88888887555..8**** PP

      AAA_21 264 DEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 DEp +g + +l r+ +++lk+l+++g+ +iltTH 
  CTQ26469.1 161 DEPTAGVDIELRRSMWGFLKDLNDRGTTIILTTHY 195
                 **********************************6 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   4.8e-05     0.067      18      57 ..      27      73 ..      20      96 .. 0.73
   2 !    8.6   0.0     0.001       1.4     288     364 ..     128     194 ..      69     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.8e-05
      AAA_15 18 eidlseeltvliGkNnsGKSsilealdlFlnnkekkn.........kkv 57
                +++  + +  l G+N++GKS+ + ++  + n++ + +         k+v
  CTQ26469.1 27 QVEAGD-FYALLGPNGAGKSTTIGIISSLVNKT-SGQvnvfgydleKDV 73
                444555.999*********************76.322455555554444 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.001
      AAA_15 288 ddeelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 ++ +  + + + G++r l ++  ++ +++        ++l+++EP a   +++ ++++  lk+l + +   +i+tTH
  CTQ26469.1 128 EKRNERARMLSGGMKRRLMIA--RALMHEP-------KLLILDEPTAGVDIELRRSMWGFLKDLNDRGT-TIILTTH 194
                 666666666677777776665..4444444.......78*************************99996.9****** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   4.3e-05     0.059      25     211 ..      32     208 ..      19     216 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.3e-05
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE..SSSSSSCEEEEEEEETTSEEEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk..lkiekeevsisrrvkrkgeseykingkevtkk 121
                  f a++GpNG+GKs  +  i+ +  ++s  ++        ++  + ++ v +a+ ++ +  ++ +    ++ +++++++  + + e + ++ ++e   k
  CTQ26469.1  32 DFYALLGPNGAGKSTTIGIISSLVNKTSG-QV-------NVFGYDLEKDVVNAKRQLGLVPQEFNfnPFETVQQIVVNQAGYYGVERKEALSRSEKYLK 122
                 58899*********999988655554333.22.......122223444444444444332222220011223334444444444444444444443333 PP

                 HHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgv 211
                 ++ +l e+ +    +LSgG k  +++a       ++   l +lDe  a  D + ++ +  +lk  +++ + +i +++  e  e   +++g+
  CTQ26469.1 123 QL-DLWEKRNERARMLSGGMKRRLMIA----RALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDRgTTIILTTHYLEEAEMLCRNIGI 208
                 33.345555566669999988855554....444455568899999999999999999999998887745555566655555555555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   5.1e-06     0.007      17      50 ..      26      58 ..      19      65 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.1e-06
      AAA_29 17 ieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                ++++  +++ l Gp+G+GKST +  i+  Lv ++
  CTQ26469.1 26 LQVEAGDFYALLGPNGAGKSTTI-GIISSLVNKT 58
                556645599************99.5665566555 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.1e-05     0.015       9      81 .]     226     300 ..     219     300 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-05
                 TS-SSEEEEE.-------..--.-EEEE-TTS-EEEEE-------------.----EEEEEEEE---HHHHHHHHH CS
     DUF4162   9 sygknrieve.adaeelleepg.veeveeeggelelkledeeaanellkal.tsgveirsFeeeePsLndIFiekv 81 
                 +++++++ +  a ++ + +++g   ++ + +++le+++  e+  n+++++l ++gv++ s++ +   L++ F+ +v
  CTQ26469.1 226 KLKSETFILDlAPKSPVPKLEGyQYQLVD-TSTLEVEVLREQGINSVFAQLsAQGVQVLSMRNKANRLEELFVTLV 300
                 55666666666556666677775555543.3579*****************77*******************9876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.1e-05     0.029      20      96 ..      33     162 ..      24     194 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.1e-05
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglAptgka.AkvLaeelgi........eastiakllkrlk............................ 81 
                 + +l Gp G+GK+t+++ +  ++++  g+v ++    +    + +++lg+        + +t+++++ +++                            
  CTQ26469.1  33 FYALLGPNGAGKSTTIGIISSLVNKTSGQVNVFGYDLEKdVVNAKRQLGLvpqefnfnPFETVQQIVVNQAgyygverkealsrsekylkqldlwekrn 131
                 67899*******************997666655544322022233344433333333455555555544445555555555555555555555555566 PP

      AAA_30  82 ................grarlepgtllivDE 96 
                                 +ra +++ +lli DE
  CTQ26469.1 132 erarmlsggmkrrlmiARALMHEPKLLILDE 162
                 5666666666655555444444556666665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.3   2.8e-05     0.039      20      68 ..      32      79 ..      17     153 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.8e-05
      AAA_23 20 gltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiese 68
                 ++++ GpNGaGK+T +  i   L ++t++  +  g ++ek+ v+ + +
  CTQ26469.1 32 DFYALLGPNGAGKSTTIGIIS-SLVNKTSGQVNVFGYDLEKDVVNAKRQ 79
                578899*********996665.455566677777766666666664444 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.9e-05      0.04      18      49 ..      23      54 ..      16      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.9e-05
      AAA_27 18 sldfsaeeadlhliyGpNEAGKstalrAisdl 49
                 +d++ e+ d+  ++GpN AGKst++  is+l
  CTQ26469.1 23 GIDLQVEAGDFYALLGPNGAGKSTTIGIISSL 54
                578999999****************9888877 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.6e-05     0.036       4      56 ..      34      88 ..      32     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.6e-05
                EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSS..TTHHHHHHHHHHHTT CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkvllvaaDtfR..aaAveQLktlaeklg 56
                ++l+G++GaGK tt++ ++ l++k   +v +   D  +  + A  QL  + ++ +
  CTQ26469.1 34 YALLGPNGAGKSTTIGIISSLVNKTSGQVNVFGYDLEKdvVNAKRQLGLVPQEFN 88
                6799*********************999999999976533567777766666666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   0.00031      0.43       6     128 ..      32     192 ..      28     202 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00031
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee..............erpevv..fvtlpsstsskdllrellralglelka................er 72 
                  + ++ G+ G+GK+t++  + +  ++ + + +              ++ ++v  +++ +  ++ +++  + +  +g+e+k+                +r
  CTQ26469.1  32 DFYALLGPNGAGKSTTIGIISSLVNKTSGQVNvfgydlekdvvnakRQLGLVpqEFNFNPFETVQQIVVNQAGYYGVERKEalsrsekylkqldlweKR 130
                 578999**********99998887655555558899988888866544444477777777777777777777777777777888888888888888855 PP

      AAA_22  73 lsseell.ealeqalrarav....ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                 +++ ++l   + + l  +++    ++lli+DE    ++   +  ++ +L++l +    g+++iL 
  CTQ26469.1 131 NERARMLsGGMKRRLMIARAlmhePKLLILDEPTAgVDielRRSMWGFLKDLND---RGTTIILT 192
                 666666655555555555556999999999998887777656888888888877...66666665 PP

>> RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.4e-05     0.088     126     210 ..     183     299 ..      92     301 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.4e-05
                     C..........CCHHHHHHHHCCS-BE-SSSSB-EEEEEETTEEEEEESSSST.........................SCEEEE-HHHHHHHHHC CS
                     x..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 126 k..........krlkaieelckkinlcekCgavqpkleeegeklkaalkkske.........................eekeklsaekvkkllkr 185
                     +          + l++ e lc++i ++++ ++v+   + +++ l ++lk++                            e e l+++ +++++ +
      CTQ26469.1 183 NdrgttiilttHYLEEAEMLCRNIGIIQHGELVE---NTSMKALLSKLKSETFildlapkspvpklegyqyqlvdtstLEVEVLREQGINSVFAQ 274
                     0444444444477888888888888888777655...233333333333333344455555566777777777777657779************* PP

                     STHHHHHHTTSBTTTB-GGGCCECC CS
                     xxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 186 iededvevlgfkssgsrPewliltv 210
                     ++++ v+vl+++++ +r e+l +t 
      CTQ26469.1 275 LSAQGVQVLSMRNKANRLEELFVTL 299
                     *******************998876 PP

>> CelD_N  Cellulase N-terminal ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00018      0.25       4      27 ..      96     119 ..      93     141 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00018
                 -S--TTTTSS--XXXXXXXXXXXX CS
      CelD_N   4 snirvNQvGYlpqseKvAvlvste 27 
                 ++i vNQ GY+  + K A+ +s++
  CTQ26469.1  96 QQIVVNQAGYYGVERKEALSRSEK 119
                 79****************988443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2359.68
//
Query:       CTQ26470.1  [L=256]
Description: putative transport protein (ABC superfamily, membrane) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-38  132.4  25.5    1.4e-38  132.4  25.5    1.8  2  ABC2_membrane    ABC-2 type transporter
      8e-06   25.2  27.7      8e-06   25.2  27.7    1.4  1  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4  25.5   1.6e-42   1.4e-38       3     209 ..       9     218 ..       7     219 .. 0.93
   2 ?   -0.8   0.6     0.093   8.4e+02     110     121 ..     229     241 ..     221     250 .. 0.43

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 1.6e-42
  ABC2_membrane   3 ikallkreflqrwrdpslgllwrliqplllalvfgtvfgn.lg..nsedglnr........pgllffsvlflafsaltsvapvferergvlerelv 87 
                    +k ++ +e+ ++ r ++++l+ ++i++ l++++fg ++g+ +g  +               pgl++++v+++a+++++s+ +++ + ++++e++lv
     CTQ26470.1   9 LKSIWTKEIHRFMRIWVQTLVPPVITMTLYFVIFGNLIGSrIGemH------GftymqfivPGLIMMAVITNAYANVASS-FFSAKFQRNIEELLV 97 
                    6899***********************************6433222......123456799************7777777.*************** PP

  ABC2_membrane  88 splyslsayvlakvlvelpvsllqalifllivyflvgldlsrfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipid 183
                    +p+ +++++++++v + ++++l+++++++++++f+v +++ +++++ l+lllta+++s  gll++++a++f+d+s++ ++vl+pl++l+G+f++++
     CTQ26470.1  98 APV-PTHVIIAGYVGGGVARGLCVGFLVTAVSLFFVPFQVHSWLFVALTLLLTAVLFSLAGLLNAVFAKTFDDISLIPTFVLTPLTYLGGVFYSLT 192
                    ***.************************************988***************************************************** PP

  ABC2_membrane 184 smpkwlqwiaylnPltyavealrsnl 209
                     +p ++q +++lnP++y+++++r ++
     CTQ26470.1 193 LLPPFWQGLSHLNPIVYMISGFRFGF 218
                    **77*******************876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.093
  ABC2_membrane 110 lqalifll.ivyf 121
                     +a+++++ ++++
     CTQ26470.1 229 TFAVLVVFiVAFY 241
                    3333333312222 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2  27.7   8.9e-10     8e-06     159     342 ..      58     243 ..      48     245 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 8.9e-10
  ABC2_membrane_3 159 vasflvg.liliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilll.afglgipfg.nlglllllfllfg 249
                      + +f+v+ li++ +i+  ++++a+s+ + k +r +e +lv++v +  ++ + + g ++ +l + +l++++ +f   +pf  +++l++ l ll  
       CTQ26470.1  58 YMQFIVPgLIMMAVITNAYANVASSFFSAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLCVGFLVTAVsLFF--VPFQvHSWLFVALTLLLT 149
                      567888889******************************************99999999*99999999987898..999987777777777777 PP

  ABC2_membrane_3 250 layialgyllsslfknsetaqilifivilllsgffgglfp.ledlpsalkwifsiiPffapglgllrlitgdplweillsliilalfavvylll 342
                       ++ +l+ ll ++f ++ + ++li+ + l+++ ++gg+f  l  lp +++ ++ ++P+++ + g+     g + +++++ +++l++f+v++ ll
       CTQ26470.1 150 AVLFSLAGLLNAVFAKTFDDISLIPTFVLTPLTYLGGVFYsLTLLPPFWQGLSHLNPIVYMISGFRFGFLGINDVPLATTFAVLVVFIVAFYLL 243
                      77777888888888888777777777777788888888655***********************97666666669****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1065  (0.059401); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2013.15
//
Query:       CTQ26471.1  [L=146]
Description: putative PTS Enzyme IIA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-24   85.8   0.0    2.8e-24   85.6   0.0    1.1  1  EIIA-man  PTS system fructose IIA component


Domain annotation for each model (and alignments):
>> EIIA-man  PTS system fructose IIA component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0   1.5e-28   2.8e-24       1     115 [.       3     116 ..       3     117 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 1.5e-28
                 EEEEEESBCHHHHHHHHHHCCHSSS-SCEEEEEC-TTS-CCCHHHHHHHHHCTS--TTEEEEEESSCCCHHHHHHHHCCTTSTTEEEEEC--CHHHHHH CS
    EIIA-man   1 givivsHgelAeglaelleelagedqekviavggtpdesigtlaekikeaieevdsedevlvLvDlggatpfneaaleleekeelevitgvnlPlveea 99 
                 g+vi++H+elA+++++ le+ +g    +++av+ +++ s ++l++++++a++++ds+d+v++L+D  ga p+++aal ++++ ++evi+gv  Pl+e +
  CTQ26471.1   3 GWVITCHDELAQEMLDRLEQKFGP-LAQCRAVNYWRNLSSNMLSRMMCDALHATDSGDGVIFLTDKTGAAPYRAAALMSHKHTHCEVISGVSYPLLERM 100
                 79**********************.68************************************************************************ PP

                 HHHHCHHHCCHHHHHH CS
    EIIA-man 100 vaarasaslgelvekv 115
                 ++ r + s+ ++++++
  CTQ26471.1 101 YLLRGTLSSVAFRQAI 116
                 ****888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1238.40
//
Query:       CTQ26472.1  [L=417]
Description: putative exported polysaccharide deacetylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-21   73.9   0.0    1.8e-20   73.0   0.0    1.5  1  Polysacc_deac_1  Polysaccharide deacetylase
  ------ inclusion threshold ------
      0.057   13.4   0.9       0.86    9.6   0.2    2.3  2  Glyco_transf_4   Glycosyltransferase Family 4
      0.057   13.7   0.0       0.39   11.0   0.0    2.4  3  SH3_3            Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   3.1e-24   1.8e-20       3     123 ..     236     375 ..     234     376 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 3.1e-24
                      HTTSTEEEEEEEESSCSCHHHHHHHHHHCT--EEEEE-HHHHCH-.............HHHHHHHHHTTEEEEE--SS--EG........GGSH CS
  Polysacc_deac_1   3 tkgkksvalTfDdgprdntteilpvLkkykvkatffvigglvedy.............pdevremaasGveignHtinhsnl........krls 75 
                      + + ++va+TfDdg +++ ++++pvLk+y+++at f+i++ ++++              +e+r++++  ++i++Ht+  ++         ++  
       CTQ26472.1 236 NLPARAVAITFDDGLKSVNRYAYPVLKQYGFHATAFIISSRIKRHpqkwdpkslqfmsISELRQIQDV-FDIQSHTHFLHRVdagrrpilFSRN 328
                      56899*****************************************************9******988.*******88886666666666**** PP

                      HHHHHHHHHHHHHHHHHHHS----EEE-GGGEE-HHHHHHHHHTT.EE CS
  Polysacc_deac_1  76 eeevrreierakdalrkalgreprlfryPygsasatvlevarelgfay 123
                       +++  +++r+++al + +++++ ++ yP+g ++at++++a+++gf++
       CTQ26472.1 329 YHNILFDFARSRRALSQ-FNPHVLYLSYPFGGYNATAVQAANDAGFHM 375
                      ****************9.****************************86 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.029   1.8e+02      50     108 ..     134     189 ..     107     219 .. 0.65
   2 ?    9.6   0.2   0.00014      0.86      41      87 ..     316     362 ..     295     398 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.029
  Glyco_transf_4  50 llkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrlgiplVltvHglye 108
                      l+++lr+ + l++l+ +l +  + +        ++++ l +   +gip+ ++ H l +
      CTQ26472.1 134 TLANNLRY-PILSKLKDRLNQTWFQIRIGDR--LAWVSSLDAQEDHGIPVLTYHHILRD 189
                     44444443.3455777777777777774444..455666777778****9888887665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00014
  Glyco_transf_4  41 vrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaa 87 
                     v+ +r+p+++++++ ++l  + r rr+l +++p+v+   +p+ ++ a
      CTQ26472.1 316 VDAGRRPILFSRNYHNILFDFARSRRALSQFNPHVLYLSYPFGGYNA 362
                     5667889999999999********************99998886544 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.52   3.1e+03      16      54 ..      53      88 ..      52      89 .. 0.68
   2 ?   11.0   0.0   6.6e-05      0.39       5      51 ..     121     169 ..     117     171 .. 0.87
   3 ?   -3.7   0.0       2.7   1.6e+04      46      51 ..     228     233 ..     225     234 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.52
       SH3_3 16 igtlpyGekVevleetgggeWykvrtddgteGwvssgyl 54
                +g + +G+ + v+    +  +y  r   gt G++ +g+l
  CTQ26472.1 53 VGNVRAGQILAVVPTAAD--YYEFRFGFGT-GFIDKGHL 88
                678888888888887777..7777444444.77766665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 6.6e-05
       SH3_3   5 vRsgPstssevigtlpyGekVevleetggge...WykvrtddgteGwvss 51 
                 ++++Ps ss   gtl ++ +  +l++ ++     W+++   +++ +wvss
  CTQ26472.1 121 LYDAPSVSSAPFGTLANNLRYPILSKLKDRLnqtWFQI-RIGDRLAWVSS 169
                 789********************99888877889****.777777***97 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.7
       SH3_3  46 eGwvss 51 
                 eG+v +
  CTQ26472.1 228 EGYVRN 233
                 899987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3039.54
//
Query:       CTQ26473.1  [L=126]
Description: aspartate 1-decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-46  157.4   0.1    1.3e-46  157.3   0.1    1.0  1  Asp_decarbox  Aspartate decarboxylase


Domain annotation for each model (and alignments):
>> Asp_decarbox  Aspartate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.3   0.1   7.2e-51   1.3e-46       1     114 [.       1     114 [.       1     115 [. 0.99

  Alignments for each domain:
  == domain 1  score: 157.3 bits;  conditional E-value: 7.2e-51
                   XEEEEEEEEEEEEEXXEEETTXXXXEEEEHHHHHHCT--TTBEEEEEETTT--EEEEEEEEESTTTT-EEEEGGGGGG--TT-EEEEEEEEEEEHHH CS
  Asp_decarbox   1 mlrtllksKihratvteaelnYeGSitideelleaagileyekvqvvnvnngeRletYvikgergsgviclnGaaarlvqvgdkviiiayaqleeee 97 
                   m+r++l++K+hr++vt+a+l+YeGS++id+++l+aagile+e+++ +nv+ng+R++tY+i++ergs++i++nGaaa++++vgd++ii+++ ++++ee
    CTQ26473.1   1 MMRNMLQGKLHRVKVTQADLHYEGSCAIDQDFLDAAGILENETIHLWNVTNGNRFSTYAIAAERGSRIISVNGAAAHCASVGDILIIASFVTMSDEE 97 
                   99*********************************************************************************************** PP

                   HHH---EEEEE-TTS-E CS
  Asp_decarbox  98 akelkpkvvlvdeknri 114
                   a++++p++ +++ +n++
    CTQ26473.1  98 ARSWQPNIAYFEGDNEM 114
                   **************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 914.01
//
Query:       CTQ26474.1  [L=284]
Description: pantothenate synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.9e-102  341.4   0.0   3.3e-102  341.3   0.0    1.0  1  Pantoate_ligase  Pantoate-beta-alanine ligase


Domain annotation for each model (and alignments):
>> Pantoate_ligase  Pantoate-beta-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.3   0.0  1.8e-106  3.3e-102       2     265 ..       3     278 ..       2     279 .. 0.94

  Alignments for each domain:
  == domain 1  score: 341.3 bits;  conditional E-value: 1.8e-106
                      EEESHHHHHHHHHHHHHTT-EEEEEEE-SS-GHHHHHHHHHHHHHSSEEEEEEEEEGGGSSTTSCTTTSEEEHHHHHHHHHHTT-SEEE---HH CS
  Pantoate_ligase   2 iiktvaelrellkelrkegkkvglVpTmGaLHeGHlsLvkaakeendvvvvSiFvNplqFgpkedlekYPrtleaDlelleeagvdlvFaPsve 95 
                      ii++v  lr+++++lr+egk+++lVpTmG+LH+GH++Lv++ak+++dvvvvSiFvNp+qF++ +dl++YPrtl++D+e+l++ +vd+vFaP+ +
       CTQ26474.1   3 IIESVLLLRQHIRRLRQEGKRIALVPTMGNLHDGHMKLVDEAKASADVVVVSIFVNPMQFDRVDDLARYPRTLQDDCEKLNKRHVDFVFAPTPA 96 
                      67888899************************************************************************************** PP

                      HHST......EEEEECSGGCSTHHHHSTTHHHHHHHHHHHHHHHHT-SEEEEEGGGHHHHHHHHHHHHHTT-SSEEEEEEEEBETTSEBTTGGG CS
  Pantoate_ligase  96 emyp......ttvevkelsevlegasrpghFrGVatvvtkLfnivqpdrayfGqKDaqqlavirrlvkdlnlpveivavpivReedgLAlSSRN 183
                      e+yp      t+v+v++ls++legasrpghFrGV t+v+kLfn+vqpd+a+fG+KD+qqla+ir++v+d+ +++ei++vpivR++dgLAlSSRN
       CTQ26474.1  97 EVYPqgtegqTYVDVPGLSTMLEGASRPGHFRGVSTIVSKLFNLVQPDVACFGEKDFQQLALIRKMVADMGYDIEIIGVPIVRAKDGLALSSRN 190
                      ***99999*99*********************************************************************************** PP

                      GGS-HHHHHHTTHHHHHHHHHH........BHHHHHHHHHHHHHTHTTEEEEEEEEEETTTSS..BSSB.SEEEEEEEEEETTEEEEEEE CS
  Pantoate_ligase 184 kyLseeerkaAlvlykaLkaak........eaealkeaakeeleeeelekadyveivdaetleeleleeekkavllvaakvgkvrLiDni 265
                       yL++++rk A+ lyk+L+a++        + +++ + a++el+e++++ ad ++i+da+tl el+ +++++av+l+aa++g++rLiDn 
       CTQ26474.1 191 GYLTADQRKIAPGLYKVLSAVAeklaagdrQLDEIIAIAEQELNEKGFR-ADDIQIRDADTLLELT-DASQRAVILMAAWLGQARLIDNR 278
                      *********************9777766655566667788888888876.799*********8864.45588*****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1967.79
//
Query:       CTQ26475.1  [L=263]
Description: 3-methyl-2-oxobutanoate hydroxymethyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-104  347.7   0.3   4.1e-104  347.6   0.3    1.0  1  Pantoate_transf  Ketopantoate hydroxymethyltransferase
     0.0039   17.1   0.0      0.008   16.0   0.0    1.5  1  Asp_Glu_race     Asp/Glu/Hydantoin racemase


Domain annotation for each model (and alignments):
>> Pantoate_transf  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.6   0.3  4.6e-108  4.1e-104       2     258 ..       4     257 ..       3     258 .. 0.98

  Alignments for each domain:
  == domain 1  score: 347.6 bits;  conditional E-value: 4.6e-108
  Pantoate_transf   2 vtvkdlrkmkeegekiamlTaydattAklvdeagvdviLVGDslgmvvlgyestlpvtleemiyhtkaVargakralvvadlPfgsyeaskeqa 95 
                      +t++ l+k k+e++++a++Tayd ++Akl+++ g++v+LVGDslgm+v+g++stlpvt+e+++yht+aV+rga+++l++adlPf+ y a++eq+
       CTQ26475.1   4 TTIALLQKCKQEKKRFATITAYDHSFAKLFADEGINVLLVGDSLGMTVQGHDSTLPVTVEDIAYHTRAVRRGAPNSLLLADLPFMAY-ATPEQT 96 
                      58999**********************************************************************************.****** PP

  Pantoate_transf  96 lenAarllkeggadavKleggaevaetvkalveagipVmgHiGltPqsvnalggykvqgkteeeaeklledakaleeaGafalvlEavpaelak 189
                      ++nAa ++++ ga++vKlegga++a+tv++l e+ +pV+gH+GltPqsvn++ggykvqg+  ++a++l+eda+ale+aGa++lvlE+vp elak
       CTQ26475.1  97 FANAAIVMRA-GANMVKLEGGAWLADTVRMLAERAVPVCGHLGLTPQSVNVFGGYKVQGRG-DAAQTLFEDALALEAAGAQLLVLECVPVELAK 188
                      *********9.*************************************************5.6788**************************** PP

  Pantoate_transf 190 eiteklsiptIGIGAGaacdGqvlvlhDllgltekfkpkfvkkyaelaesieeavkaYaeevkegsFPa 258
                      +it++l+ip+IGIGAG+ +dGq+lv+hD++g+t  + pkf+k++++ a +i++av++Y++ev++g +P 
       CTQ26475.1 189 RITDALTIPVIGIGAGNVTDGQILVMHDAFGITGGHIPKFAKNFLAEAGDIRAAVRQYIAEVESGVYPG 257
                      ********************************************************************7 PP

>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     9e-07     0.008      52      99 ..     156     202 ..     139     215 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9e-07
                   ..THHHHHHHHHHHHCTTESEEEE--CHHHHHHHHHHHH-SSEEEECH CS
  Asp_Glu_race  52 ddpvlklleaakkLekagadaiviaCnTahavadelqkkikiPvlgiv 99 
                    d++++l e+a +Le+aga+++v+ C     +a++++++++iPv+gi 
    CTQ26475.1 156 GDAAQTLFEDALALEAAGAQLLVLECVPV-ELAKRITDALTIPVIGIG 202
                   34677999********************9.****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1974.24
//
Query:       CTQ26476.1  [L=159]
Description: 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-36  124.5   0.0      3e-36  124.3   0.0    1.0  1  HPPK      7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase


Domain annotation for each model (and alignments):
>> HPPK  7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   1.7e-40     3e-36       1     112 []       5     134 ..       5     134 .. 0.95

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 1.7e-40
                 EEEEEE-SSSHHHHHHHHHHHHHH....EEEEE---EEE--S...SS-GEEEEEEEEEESS-HHHHHHHHHHHHHHTT--C...STS-BS-EEEEEEET CS
        HPPK   1 ylalGsNlgdreanleealealee....kvvkvSslyetepv...dqpdFlNavvevetelspeellealkeiEkelgrer...rwgpRtlDlDillyg 89 
                 y+alGsNl ++ +++++a++al e    +vv+vSs+y+t+p+   dqpd+lNa+v++et+l pe+ll+++++iE + gr+r   rwgpRtlDlDi+l+g
  CTQ26476.1   5 YIALGSNLASPLEQVQAAIRALGEiphsRVVAVSSFYRTPPLgpqDQPDYLNAAVALETALPPETLLDHTQRIELQQGRVRkaeRWGPRTLDLDIMLFG 103
                 89********************777777899***********98789********************************965656************** PP

                 ........EEES-TTGGG-HHHHHHHHHHCT CS
        HPPK  90 ........ltlPhprlaeraFvlvplaelap 112
                         lt+Ph ++++r F+l pl e+ap
  CTQ26476.1 104 davinserLTVPHYDMKNRGFMLWPLFEIAP 134
                 *****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1179.92
//
Query:       CTQ26477.1  [L=453]
Description: poly(A) polymerase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-42  143.3   2.7    6.8e-42  142.3   2.7    1.5  1  PolyA_pol_arg_C  Polymerase A arginine-rich C-terminus
    3.2e-39  134.3   0.4    9.3e-39  132.7   0.1    1.9  2  PolyA_pol        Poly A polymerase head domain
    6.4e-20   70.7   0.3      2e-19   69.1   0.1    2.0  2  PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polym


Domain annotation for each model (and alignments):
>> PolyA_pol_arg_C  Polymerase A arginine-rich C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.3   2.7   1.1e-45   6.8e-42       2     119 ..     327     445 ..     326     447 .. 0.94

  Alignments for each domain:
  == domain 1  score: 142.3 bits;  conditional E-value: 1.1e-45
  PolyA_pol_arg_C   2 glspvdAlalAadevleeqvkkvaiprrftadmreIWalQprlekrqgkrakrllehprFraayDfLlLra..esgevleelaewWtefqeade 93 
                      gl+++dA+alA+++vl+e ++++aip+r+t+ +r+IW+lQ+r+++rqgkra++l+ehp+FraayD+L+Lra  e+++ l++l++wW efq a +
       CTQ26477.1 327 GLAYYDAFALAMNDVLDEACRTLAIPKRITTLIRDIWQLQLRMSRRQGKRAWKLMEHPKFRAAYDLLELRAgaENNHELQRLTKWWGEFQVAAP 420
                      8999*******************************************************************87777779*************** PP

  PolyA_pol_arg_C  94 eereelikelkeeeakkkkrrrrrrr 119
                       ++++++++l+++ a  ++r rr+r+
       CTQ26477.1 421 PAQKDMLNDLGDDPAP-RRRHRRPRK 445
                      ***********99976.777777776 PP

>> PolyA_pol  Poly A polymerase head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.64   3.8e+03      86     104 ..      23      41 ..       3      46 .. 0.64
   2 !  132.7   0.1   1.6e-42   9.3e-39       2     126 .]      52     182 ..      51     182 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.64
                 HHHHHHCTSSBGGGS-EEE CS
   PolyA_pol  86 sleeDlkrRDftiNalayn 104
                 + ++ + r+D++ Nal + 
  CTQ26477.1  23 REQHAISRKDISENALKVM 41 
                 5566678999999999875 PP

  == domain 2  score: 132.7 bits;  conditional E-value: 1.6e-42
                 EEETHHHHHHHTT---CEEEEEECS-HHHHHHHHHHHHT-EEEEETTTTCCCCEECCEEEEECCEECEEEEEE---SSHHH.............HHHHH CS
   PolyA_pol   2 ylvGGaVRDlllgkepkDvDlatdaapeelakllrkkvkeallsgeefqtiavlekkqllevatfRlekdesdarnpesekste..........sleeD 90 
                 +lvGG VRDlllgk+pkD+D++t+a+p++++kl+r+++ +    g++f++++v+++ +++evatfR +++ +   + +s++ ++          s+eeD
  CTQ26477.1  52 WLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLV----GRRFRLAHVMFGPEIIEVATFRGHHEGHTTDRVTSQRGQNgmllrdnifgSIEED 146
                 89**************************************....************************977666666555554599************* PP

                 HCTSSBGGGS-EEECTTTCEE-TTSHHHHHHTTEE- CS
   PolyA_pol  91 lkrRDftiNalaynlnkgkvlDlfgGikdLkskvir 126
                 ++rRDftiN+l+y++++ +v D++gG+kdL+++vir
  CTQ26477.1 147 AQRRDFTINSLYYSVADFTVRDYVGGMKDLQDGVIR 182
                 **********************************97 PP

>> PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polymerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.1   3.3e-23     2e-19       1      61 [.     209     269 ..     209     272 .. 0.96
   2 ?   -2.6   0.0       0.8   4.8e+03      33      47 ..     379     393 ..     378     394 .. 0.89

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 3.3e-23
  PolyA_pol_RNAbd   1 gFtIepeTaaairklaplLkkispeRifeEllKlLlsghpeaglelLretgLlkylfPela 61 
                      ++tI+peTa+++++la lL++++p+R+feE+lKlL++g++++++ lLre+ L+++lfP ++
       CTQ26477.1 209 NMTISPETAEPLPRLAALLHDVPPARLFEEVLKLLQAGYGYQTYMLLREYSLFQPLFPTIT 269
                      79********************************************************986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.8
  PolyA_pol_RNAbd  33 KlLlsghpeaglelL 47 
                      Kl+ +++ +a+++lL
       CTQ26477.1 379 KLMEHPKFRAAYDLL 393
                      9999*******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3533.00
//
Query:       CTQ26478.1  [L=293]
Description: glutamyl-Q tRNA(Asp) synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-44  152.5   0.0    1.7e-43  148.7   0.0    2.0  1  tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic d


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.7   0.0   9.7e-48   1.7e-43       5     252 ..       9     237 ..       7     287 .. 0.90

  Alignments for each domain:
  == domain 1  score: 148.7 bits;  conditional E-value: 9.7e-48
                   EE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE-STH CS
  tRNA-synt_1c   5 RfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvcectk 101
                   RfaP+P+G+LH G+  aal +yl A++n+G   +RieD dp re+++a + il++l+  g++wd  +  qs+r + +++    L ++G+ Y c ct 
    CTQ26478.1   9 RFAPSPSGELHFGSLIAALGSYLQARANQGIWRVRIEDIDPPREVPGAADTILRQLDHYGLHWDGDVLWQSQRHEAYREALTWLGEQGLSYYCTCTR 105
                   9***********************************************************************************************9 PP

                   HHHHHHHCCSSHSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSSGGGSSTEEEE.EEESGGGSBTTTBTSTSEEE-HHHHHHHHHHH CS
  tRNA-synt_1c 102 eeleeereeqeklgskerdrydeenlklfeeemkkgkaegekavvRlkideessvefrDlvrgr.iklepqeihdlvivksdiyPtYdfavvidDal 197
                    ++++  +            yd+++++l            e+a +Rl++ +    +f D +rg  i++ep + +d++i++ d++  Y++avv+dD+ 
    CTQ26478.1 106 ARIHAVGGI-----------YDGHCRDLG--------LGAENAALRLRQTRPV-LQFSDRLRGTlIANEPLAREDFIIHRRDGLFAYNLAVVVDDHF 182
                   999877655...........99******9........3466789999998885.5********8578888888************************ PP

                   TT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHH CS
  tRNA-synt_1c 198 eeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsll 252
                    +it ++r+ + ++ t ++i l++ +g+++p + h++l ln +++klSK + +  
    CTQ26478.1 183 QGITEIVRGADLIEPTVRQISLYQHFGWQAPDYLHLPLALNGDGNKLSKQNHAPA 237
                   *************************************************877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2298.53
//
Query:       CTQ26479.1  [L=151]
Description: DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-10   40.7   3.3    2.6e-10   40.1   3.3    1.3  1  zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
  ------ inclusion threshold ------
      0.039   13.4   2.2       0.85    9.0   2.3    2.1  2  Not3          Not1 N-terminal domain, CCR4-Not complex compon
      0.068   13.2   0.2       0.12   12.4   0.2    1.3  1  DZR           Double zinc ribbon
       0.14   12.0   0.7        3.3    7.6   0.0    2.4  2  FAM165        FAM165 family


Domain annotation for each model (and alignments):
>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   3.3   5.8e-14   2.6e-10       2      35 ..     110     143 ..     109     144 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 5.8e-14
  zf-dskA_traR   2 iygsCeeCGEpIpeaRlralPgarlCveCqekae 35 
                   ++g+Ce CG +I+  Rl+a+P+a lC++C++ ae
    CTQ26479.1 110 DFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143
                   69***************************98766 PP

>> Not3  Not1 N-terminal domain, CCR4-Not complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.3   0.00019      0.85       4      56 ..      50     106 ..      47     109 .. 0.65
   2 ?    6.3   1.7    0.0013       5.8       2      18 ..      92     108 ..      91     116 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00019
        Not3   4 klqqeidktlkkvaegveeFdeiyeklesaen....qsqkeKleadLKkeikKLqrl 56 
                 +l+ e+d+t+  ++++ ++F + +++  + e+     +++++  +  Kk  k L+++
  CTQ26479.1  50 QLRDEVDRTVSHMQDEAANFPDPVDRAAQEEEfsleLRNRDRERKLIKKIEKTLKKV 106
                 788999999999999999999999999988775554334444333333333334444 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0013
        Not3   2 krklqqeidktlkkvae 18 
                 +rkl + i+ktlkkv++
  CTQ26479.1  92 ERKLIKKIEKTLKKVED 108
                 7**************97 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   2.7e-05      0.12       9      39 ..     108     143 ..     104     148 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.7e-05
         DZR   9 ppdarfCseCgtk.....lkavaaedrCpsCgekvd 39 
                 ++d  +C+ Cg +     l+a +++d C  C++ ++
  CTQ26479.1 108 DEDFGYCESCGVEigirrLEARPTADLCIDCKTLAE 143
                 56677*******977666766666*******99876 PP

>> FAM165  FAM165 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00073       3.3      22      43 ..      15      36 ..       8      43 .. 0.81
   2 ?    2.2   0.4     0.036   1.6e+02      33      45 ..      97     109 ..      94     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00073
      FAM165 22 LaFAGvKiyQrKklEaklkkke 43
                La AGv  yQ K  E+ +   +
  CTQ26479.1 15 LAIAGVEPYQEKPGEEYMNEAQ 36
                9***********9998876655 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.036
      FAM165  33 KklEaklkkkeee 45 
                 Kk+E  lkk e+e
  CTQ26479.1  97 KKIEKTLKKVEDE 109
                 9********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1375  (0.0766914); expected 358.6 (0.02)
Passed bias filter:                      824  (0.0459591); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1256.07
//
Query:       CTQ26480.1  [L=238]
Description: putative regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-50  168.5   0.0    9.3e-50  168.1   0.0    1.1  1  SfsA      Sugar fermentation stimulation protein RE domain
    4.1e-21   74.9   0.0    7.6e-21   74.0   0.0    1.4  1  SfsA_N    SfsA N-terminal OB domain
  ------ inclusion threshold ------
      0.063   13.3   0.0       0.11   12.5   0.0    1.4  1  DUF3883   Domain of unknown function (DUF3883)
        0.1   12.8   0.0       0.15   12.3   0.0    1.3  1  DUF1431   Protein of unknown function (DUF1431)


Domain annotation for each model (and alignments):
>> SfsA  Sugar fermentation stimulation protein RE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1   0.0   2.1e-53   9.3e-50       2     136 ..      84     221 ..      83     223 .. 0.98

  Alignments for each domain:
  == domain 1  score: 168.1 bits;  conditional E-value: 2.1e-53
                 HHHHHHHHHHEE...........EEES-EE..TTEE-SEEEE-S.SSEEEEEEEE--EE..EEEEE-SS--HHHHHHHHHHHHHHHTT-EEEEEEEE-S CS
        SfsA   2 lpnklveealesgli.elagyeeikrevky..gnsriDfllekeeeekcyvEVKsvtleeggialfPdapteRgqkhleeLaelvkegyravvlfvvqr 97 
                 ++n l++ea+++g+i el+gy+++k evky  +nsriD++l+ +++++cy+EVKsvtl+e+++++fPda+t+Rgqkhl+eL++++++g rav+lf v +
  CTQ26480.1  84 RANSLAKEAISAGIIpELSGYNQLKSEVKYgeENSRIDIMLQADDRQNCYIEVKSVTLAEKEYGYFPDAVTTRGQKHLRELMAVAANGDRAVILFAVLH 182
                 689*********************************************************99************************************* PP

                 SS--EEEE-TTT-HHHHHHHHHHHHHT-EEEEEEEEE-T CS
        SfsA  98 edarefkpnkeidpefaealreaaeaGVevlaydckvtp 136
                 + +++f+p+++id ++a++l ea+++GVe+la++++++ 
  CTQ26480.1 183 SAIDRFSPAHHIDARYAQLLTEAQDKGVEILAWKAELST 221
                 *********************************999875 PP

>> SfsA_N  SfsA N-terminal OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   1.7e-24   7.6e-21       1      62 [.      13      79 ..      13      80 .. 0.90

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 1.7e-24
                EEEEETTEEEEEEE......EE----S--TTT--TT-EEEEE....ESSS-SEEEEEEEET.TEEEE CS
      SfsA_N  1 lrRpnRFladveld.g...tvHvpntGrlkelllpGarvllsksdnpkrKtkytleaveke.gtwvg 62
                l+R++RFladv  + g   t H+pntG++++++ pG +v++s+sdn krK+++t+e++e++ g++++
  CTQ26480.1 13 LKRYKRFLADVVTPdGrelTLHCPNTGAMTGCAAPGDTVWYSTSDNAKRKYAHTWELTETQqGAVIC 79
                89**********99546677**************************************999455665 PP

>> DUF3883  Domain of unknown function (DUF3883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.5e-05      0.11      18      54 ..     107     143 ..      85     149 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
     DUF3883  18 vewvnedvedglgYDiesvdkedgeerfIEVKtta.kg 54 
                 ++ ++++ e++   Di ++   d ++ +IEVK+ + ++
  CTQ26480.1 107 LKSEVKYGEENSRIDIMLQA-DDRQNCYIEVKSVTlAE 143
                 5677888889999******9.6899********98533 PP

>> DUF1431  Protein of unknown function (DUF1431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.4e-05      0.15      11      35 ..      46      70 ..      35      92 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.4e-05
     DUF1431 11 prfDlkyYkpsdklkrkyqrtWvec 35
                 + D+  Y  sd +krky  tW   
  CTQ26480.1 46 APGDTVWYSTSDNAKRKYAHTWELT 70
                577999****************654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1763.71
//
Query:       CTQ26481.1  [L=178]
Description: 2'-5' RNA ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-23   82.8   1.2    3.2e-13   49.7   0.1    2.6  2  LigT_PEase       LigT like Phosphoesterase
    6.5e-12   45.6   0.1    7.7e-12   45.4   0.1    1.1  1  2_5_RNA_ligase2  2'-5' RNA ligase superfamily


Domain annotation for each model (and alignments):
>> LigT_PEase  LigT like Phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.1   3.6e-17   3.2e-13       1      87 []      11      89 ..      11      89 .. 0.94
   2 !   31.4   0.1   1.8e-11   1.6e-07       4      87 .]      92     166 ..      90     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 3.6e-17
                EE-CHHHHHHHHHHHHHHHHHHCCTTEEETSGGGSEEEEEEEEEESHHHHHHHHHHHHHHHHTSBEEEEEEEEEEEEEECCSCCEEE CS
  LigT_PEase  1 lgppeeiaeelarlaaeleralaklglkpvrpfnpHiTLaflgevdeekvpellealaeiasgaepfelkvdgvglfpsrlrprviy 87
                l++p+++++++ +++a +    ++  ++pv ++n+H+TLaflgev++ek  +l + ++++  +++ f+l++d +g +    r+rv++
  CTQ26481.1 11 LELPSAVQKQIVQWRATHF---PEDAGRPVAADNLHLTLAFLGEVSAEKQRALAALAGRL--RQPGFTLTLDDAGQWL---RSRVVW 89
                57899**************...999*********************99999998888888..999************7...99*999 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 1.8e-11
                 CHHHHHHHHHHHHHHHHHHCCTTEEET.SGGGSEEEEEEEEEESHHHHHHHHHHHHHHHHTSBEEEEEEEEEEEEEECC.SCCEEE CS
  LigT_PEase   4 peeiaeelarlaaeleralaklglkpv.rpfnpHiTLaflgevdeekvpellealaeiasgaepfelkvdgvglfpsrl.rprviy 87 
                  +++++ l +la++l++++a+ g+ +  +pf+pHiTL +      ++vp     + ++     + ++ v++++l++s   r+r+ y
  CTQ26481.1  92 TRQPPRGLLQLASMLRAQAARSGCYQSpQPFHPHITLWRDAR---RAVPIP---APGF-----RWTFPVNEFVLYESSFsRGRTRY 166
                 5678899*********************************74...444433...3333.....34599999999999999988876 PP

>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.1   8.6e-16   7.7e-12       2     118 ..      14     133 ..      13     154 .. 0.88

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 8.6e-16
  2_5_RNA_ligase2   2 ppslaapiealr....rslydkayprwppHitLlypfvededladlaellsrlaketepfevrldgfgvFehkksvvylsv.sdsealqalraa 90 
                      p++++++i ++r     +    +++++ +H+tL+++++ +   +++ ++l+  + + + f+++ld +g    +++vv+l   ++   l +l ++
       CTQ26481.1  14 PSAVQKQIVQWRathfPEDAGRPVAADNLHLTLAFLGEVSAEKQRALAALAGRL-RQPGFTLTLDDAGQWL-RSRVVWLGTrQPPRGLLQLASM 105
                      7788999*****6544344444499999*************************9.7788***********8.588******9************ PP

  2_5_RNA_ligase2  91 llealpeagdkedsgeftPHlTiaqsad 118
                      l+++ +  g  ++ ++f+PH+T+ + a+
       CTQ26481.1 106 LRAQAARSGCYQSPQPFHPHITLWRDAR 133
                      ***********999********977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1316.54
//
Query:       CTQ26482.1  [L=809]
Description: ATP-dependent (RNA) helicase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-54  183.5   1.2    5.1e-54  182.3   1.2    1.7  1  HrpB_C      ATP-dependent helicase C-terminal
    6.5e-13   49.0   0.0    1.2e-12   48.2   0.0    1.4  1  Helicase_C  Helicase conserved C-terminal domain
      2e-09   37.5   0.0    3.8e-09   36.5   0.0    1.4  1  DEAD        DEAD/DEAH box helicase
    8.9e-09   35.6   0.2    2.4e-08   34.2   0.2    1.7  1  HA2         Helicase associated domain (HA2)
  ------ inclusion threshold ------
       0.48   10.3   0.0       0.48   10.3   0.0    3.2  3  DUF2732     Protein of unknown function (DUF2732)


Domain annotation for each model (and alignments):
>> HrpB_C  ATP-dependent helicase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.3   1.2   1.4e-57   5.1e-54       1     133 []     664     796 ..     664     796 .. 1.00

  Alignments for each domain:
  == domain 1  score: 182.3 bits;  conditional E-value: 1.4e-57
      HrpB_C   1 WlapllegvkslkelkkldlaealkallsweqqqeldelaPerlevpsgsriridYeeeeepvlsvrlqelfglketpkvaegrvpvlleLlsPaqrpl 99 
                 Wl p ++gv+sl++lk+ldl++al+++l+w+ +q+ld+++P++++vp+gsr +i+Y++e+ p+l+vr+qe+fg ++tp +aegrvp++leLlsPaqrpl
  CTQ26482.1 664 WLLPQMNGVHSLRALKALDLRQALQDWLPWPLRQKLDRELPTHYTVPTGSRLAIRYHAENPPALAVRMQEMFGEATTPVIAEGRVPLVLELLSPAQRPL 762
                 *************************************************************************************************** PP

      HrpB_C 100 qvtkdLasFwkgsYaevrkelrgrYpkHpWPedP 133
                 q+t+dL+ Fw+gsY+ev+ke++grYpkH WP+dP
  CTQ26482.1 763 QITRDLSAFWQGSYREVQKEMKGRYPKHVWPDDP 796
                 *********************************9 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   3.2e-16   1.2e-12       8     110 ..     205     327 ..     198     328 .. 0.84

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 3.2e-16
                 HHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH...... CS
  Helicase_C   8 ellkleeeggkilifvntidrlek.vklllekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv...... 97 
                 ++l l++e+g +l+f++ + ++++ ++ l+e+   ++  ++l+g lp +e+++++    +g+++v++at++ae++++i++++lV++    r        
  CTQ26482.1 205 AEL-LRHEQGSMLLFLPGVGEIQRvLEQLTERVaeDVILCPLYGALPLSEQRKAILPAPAGKRKVVLATNIAETSLTIEGIRLVVDSAQERVArfdprt 302
                 445.699*************9986655554444779*************************************************87777333334466 PP

                 ............HHHHHHHTTSSST CS
  Helicase_C  98 ............tsyiqriGRtgRa 110
                             +s+ qr+GR+gR 
  CTQ26482.1 303 gltrlvtqrisqASMTQRAGRAGRL 327
                 668888999999************6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   1.1e-12   3.8e-09      13     173 ..      19     164 ..       7     167 .. 0.74

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.1e-12
                 TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrlddl 111
                 +  +vl++a+TG+GK++   + +l   +e  g+ + +++++eP r  a++++++l +++ +       ++ g + r +  +   ++++ v t g l ++
  CTQ26482.1  19 HAPQVLLNAPTGAGKSTWLPLQIL---AE--GNIAGRIILLEPRRLAARNVAQRLAELLGEK---PGETV-GFRMRAETCVG-PQTRLEVVTEGILTRM 107
                 4569************99776666...55..89999***********************962...22223.34444444444.56999999******** PP

                 HHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
        DEAD 112 lstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdv 173
                 +++   +l  v +++lDE ++ + q   d   ++l  ++q   d   + +++++SATl  + +
  CTQ26482.1 108 IQRDP-ELTGVGLVILDEFHERSLQ--ADLALALLLDVQQGLRD---DLKLLIMSATLDnDRL 164
                 *7555.8**************9998..56666666666444443...334********95555 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.2   6.7e-12   2.4e-08       1      76 [.     389     470 ..     389     515 .. 0.78

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 6.7e-12
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAals.........veeifleeneeekeeee 76 
                 A +lL al+ALd  ++l+++Grkma+l  +prla mL+aa  +  + +  ++ ++A+l+          + +f +++++ +++++
  CTQ26482.1 389 ARRLLEALSALD-GERLSAFGRKMAALGNEPRLAAMLAAA--QTDDEAATAAKLAALLEepprgglvdLGAVFSRQQANWQQRAQ 470
                 6799*******8.69*************************..6669************977777776656666666655544444 PP

>> DUF2732  Protein of unknown function (DUF2732)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       1.5   5.5e+03      26      42 ..      55      71 ..      54      72 .. 0.84
   2 ?   10.3   0.0   0.00013      0.48       9      63 ..     157     211 ..     152     214 .. 0.93
   3 ?    0.9   0.4      0.12   4.2e+02      12      39 ..     415     443 ..     407     445 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
     DUF2732 26 eerkdrallvssRLnaL 42
                e r+ +a  v++RL++L
  CTQ26482.1 55 EPRRLAARNVAQRLAEL 71
                568889999*****998 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00013
     DUF2732   9 lkadsealavlLnkArseerkdrallvssRLnaLaihiqqkelsavEaaeLLrkE 63 
                 ++ d++ l+ lL +A      +ra  v  R   L +h + +e+ av aaeLLr E
  CTQ26482.1 157 ATLDNDRLQRLLPEAPVVVSEGRAYPVERRFSPLSAHQRFDEAVAVAAAELLRHE 211
                 5788999**********************************************99 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.12
     DUF2732  12 dse.alavlLnkArseerkdrallvssRL 39 
                  +e  la +L +A+ ++ ++ a+ +++ L
  CTQ26482.1 415 GNEpRLAAMLAAAQTDDEAATAAKLAALL 443
                 4557899******9999988888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5974.45
//
Query:       CTQ26483.1  [L=273]
Description: bifunctional prepilin leader peptidase and methylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-29  101.6   0.1    4.4e-29  100.4   0.1    1.6  2  DiS_P_DiS      Bacterial Peptidase A24 N-terminal domain
    4.7e-25   88.1  10.5    4.7e-25   88.1  10.5    2.4  3  Peptidase_A24  Type IV leader peptidase family


Domain annotation for each model (and alignments):
>> DiS_P_DiS  Bacterial Peptidase A24 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.1   4.9e-33   4.4e-29       1      80 [.      28     116 ..      28     120 .. 0.96
   2 ?   -3.4   0.0       1.3   1.1e+04       3      13 ..     129     139 ..     129     150 .. 0.65

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 4.9e-33
   DiS_P_DiS   1 ilGlligSFlnvviyrlpk.........kkslvkprSrCpkCghklkwleliPvlSylllrgrCraCkakislryplvElltallflll 80 
                 ++Gl++gSF+nvviyrlp+         + +l++p S+Cp+C+++++w+++iP+lS+l+l+ r+r+C+a+i + ypl+El+t+llf+l+
  CTQ26483.1  28 LFGLALGSFYNVVIYRLPRmltqtaddeRITLSTPGSSCPQCRQPIAWRDNIPLLSFLWLGRRARCCQAPIAWSYPLTELATGLLFILA 116
                 69************************9666********************************************************986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.3
   DiS_P_DiS   3 GlligSFlnvv 13 
                 Gl++ SFl ++
  CTQ26483.1 129 GLVLLSFLLIL 139
                 56677776554 PP

>> Peptidase_A24  Type IV leader peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3       0.2   1.8e+03      27      45 ..      19      35 ..       8      50 .. 0.54
   2 ?   -2.4   0.1      0.69   6.2e+03      43      57 ..     104     118 ..      81     121 .. 0.51
   3 !   88.1  10.5   5.3e-29   4.7e-25       1     106 [.     130     238 ..     130     239 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.2
  Peptidase_A24 27 pllllgvlfaqllllglpn 45
                   p+++ g+l+   + l l +
     CTQ26483.1 19 PFVWYGFLLL--FGLALGS 35
                   4445544443..2223322 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.69
  Peptidase_A24  43 lpnlaqavlgalvga 57 
                    l +la+ +l +l+ga
     CTQ26483.1 104 LTELATGLLFILAGA 118
                    444444444444444 PP

  == domain 3  score: 88.1 bits;  conditional E-value: 5.3e-29
  Peptidase_A24   1 lvlltillvlsviDldtrtlpdeltlpllllgvlfaqllllglpnlaqavlgalvgalvllli.....slvdeqamGgGDvklaavlgaflgwerl 91 
                    lvll++ll+l+ iD++t++lpd+ltlpll+ g+lf+  l+     l +av+ga++g+l l+++     +l+ ++a+G+GD+kl+a+lga++gw+ l
     CTQ26483.1 130 LVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFN--LNEVYIALPDAVAGAMAGYLALWSVywlfrLLTGKEALGYGDFKLLAALGAWCGWQVL 223
                    699********************************9..79999*******************887777777999********************** PP

  Peptidase_A24  92 llavlvaillgavlg 106
                    + ++l+a+  g+v++
     CTQ26483.1 224 PQVLLLASASGLVWT 238
                    ***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2101.98
//
Query:       CTQ26484.1  [L=248]
Description: Type II secretion system protein N [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-41  140.8  11.3    8.3e-41  140.5  11.3    1.1  1  T2SSN     Type II secretion system (T2SS), protein N


Domain annotation for each model (and alignments):
>> T2SSN  Type II secretion system (T2SS), protein N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.5  11.3   4.6e-45   8.3e-41       1     210 [.      34     236 ..      34     237 .. 0.93

  Alignments for each domain:
  == domain 1  score: 140.5 bits;  conditional E-value: 4.6e-45
       T2SSN   1 pgvqlqgvsGtlWqGsaaqlawqgralgrvqWrlsplslltgrlaldlrlgddartsalngkgrlaatlagssgglqlenvrlrlpaallan......p 93 
                 pgvq+ ++sG++W+G+a+ + w+g++l+r++W+l   +l    + +++ l+d++   ++ g++rl    +g + +l+l+++rl++pa+ll+       p
  CTQ26484.1  34 PGVQVGQFSGSVWRGAAQPVYWHGERLERLAWSL---TL----AGWQVSLSDPR---GVMGQARL----WGLR-DLRLQEGRLTAPASLLSRwlmstmP 117
                 79********************************...45....55666668875...67777777....9999.*****************5566689* PP

       T2SSN  94 lsasGdvsldldelrfgrggcqal.qGtlnwrnaevsslsgslplgdlraelsce.ggqltltlsdqsgpLslegqgslnaagtyrvagtlkptaeapp 190
                 ++a G+v ++l+e rf++g+c+++  G ++wr+a+++s+ gsl+l++++++++c  +g+++ltl+++s++Lsl+gqg+l+++g+y ++gtl+p++++pp
  CTQ26484.1 118 VKAAGEVTFSLTEGRFSDGRCRHIiAGGAQWRQARLHSPVGSLELAQVNGTFRCTvDGAVALTLRQDSHQLSLSGQGTLSPDGRYLFRGTLQPRQGMPP 216
                 *************************************************************************************************** PP

       T2SSN 191 aLaqaLsllGrpdadgkypl 210
                  La ++    + +a+g +p+
  CTQ26484.1 217 LLALLVTRQTANNAPGPTPW 236
                 ***99999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 2016.73
//
Query:       CTQ26485.1  [L=161]
Description: Type II secretion system protein M [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-44  151.5  10.9    2.1e-44  151.4  10.9    1.0  1  T2SSM     Type II secretion system (T2SS), protein M
  ------ inclusion threshold ------
       0.25   11.0   3.4       0.31   10.7   3.4    1.4  1  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> T2SSM  Type II secretion system (T2SS), protein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.4  10.9   2.4e-48   2.1e-44       1     159 [.       1     157 [.       1     158 [. 0.97

  Alignments for each domain:
  == domain 1  score: 151.4 bits;  conditional E-value: 2.4e-48
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHHCT--EE CS
       T2SSM   1 reqlkawWqglspRErrllaalglvlllallylllwqPlserieraqaelqklraqlawveeqaaevralraapasalsgaaleqvvtrsarqagLala 99 
                 +++l  wW++++p E+rll++l  +l+++ ++++lwqP+ +r+++++++l k++a l+w++eqa+++++l+++pa+a++ +al+++v r+a+++gL++ 
  CTQ26485.1   1 MANLLIWWRQRTPSEQRLLLGLTGLLAACAFWYGLWQPWRAREAQWRQTLVKEQASLRWMTEQAPRLQQLSQQPAPAAK-EALTALVMREAASHGLTVV 98 
                 67899**********************************************************************9877.58***************** PP

                 EEEEETT.EEEEEE--B-HHHHHHHHHHHHHHS--EEEEEEEEE--.----EEEEEEEEE- CS
       T2SSM 100 rlqpqgdgsvqvwleevpfeallrWLaeleeqqgvsveeadldrad.epGlVsvrllller 159
                 rlqpqg+ ++q++l+++pf+al++WL++ +   gv++ +++++ ++ +pG+V+v++lller
  CTQ26485.1  99 RLQPQGK-RLQITLQPCPFQALIDWLDAPA-MRGVNAISLSVTGQPsRPGWVTVNHLLLER 157
                 *******.*******************999.*************9989**********876 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.4   3.4e-05      0.31      20      62 ..       5      48 ..       1     115 [. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.4e-05
     DUF4131 20 lllllrr.rprrrvllllllllllallgfalrapqpnandlsql 62
                l+++ +r    +r ll+l+ ll+++++++ l++p+++++   ++
  CTQ26485.1  5 LIWWRQRtPSEQRLLLGLTGLLAACAFWYGLWQPWRAREAQWRQ 48
                34443335667777888888888888888899888888655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1299.98
//
Query:       CTQ26486.1  [L=397]
Description: Type II secretion system protein L [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-46  156.6   9.0    6.4e-46  156.6   9.0    1.6  2  T2SSL     Type II secretion system (T2SS), protein L
    3.5e-28   98.4   6.5    6.5e-28   97.6   6.5    1.5  1  GspL_C    GspL periplasmic domain


Domain annotation for each model (and alignments):
>> T2SSL  Type II secretion system (T2SS), protein L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   9.0   7.2e-50   6.4e-46       1     232 [.      12     236 ..      12     237 .. 0.93
   2 ?   -2.3   0.1      0.25   2.2e+03      19      49 ..     288     318 ..     270     327 .. 0.65

  Alignments for each domain:
  == domain 1  score: 156.6 bits;  conditional E-value: 7.2e-50
                 EEEEE-S-TTSEEEEEEEETTTTEEEEEEEEESGGGGGGGHHHHTTSEEEEEE-GGGSEEEEEE--TT-GGGHHHHHHHHHGGGSSSSGGGEEEEEEEE CS
       T2SSL   1 LlvRlssteeqsiewavwsvqeaevveeGqlalreglselaeypaadrvvlllPaedvllvsvslPpqalrqlrqaLpflvEdqlaqDvdqlHiavlpk 99 
                 L+vRl+  +++ + w+++   e +  ++G+ + +  +s   +++++ +  +l+Pa+d  ++s++lP + ++   q+ pfl+E+qla+Dv++ H+a+l +
  CTQ26486.1  12 LIVRLAA-AQAPLHWQLFAPGEPHHEASGRWPTDD-ASPFPALAEQYPAWVLIPASDCAFHSLTLPAGLRKPPLQVAPFLLEEQLADDVEATHFALLHR 108
                 7888875.578889988877777767888777665.56677799999**************************************************** PP

                 -SSEEEEEEEEHHHHHHHHHHHHHTT-EEEEEEEGGGGS---SSSEEEEEETTEEEEEECTTEEEEEEGGGHHHHHTSGGGEET-EEESS--------T CS
       T2SSL 100 eadtaavvavdrawlrrvLdslagaglrvkrllPdalaLPlpadvwavlnadeewlvRndeadglavdssvlpalladllaiaealarysvvpalreaa 198
                 ++ ++++vav+r+++r +L+++++  l++ +l Pd+laLP++ ++w+++++de+wl+R +   g+a+++++l +ll++   ++  +++ys++pa     
  CTQ26486.1 109 QQAQCEIVAVQRQKMRDWLARCESLSLQPLALTPDVLALPWQPPAWSAVQVDEQWLIRPQPWGGMAAENAWLTELLQSEAEEHV-IDSYSPPPAAPGV- 205
                 **************************************************************************8877777775.*********9999. PP

                 T--EEE---S-HHHHHHHHHCT----S--GGG-X CS
       T2SSL 199 qtelaarpeeavlallaraalaakadLlqgeFap 232
                    ++++p + +l+l+ar  +a+k  LlqgeFa 
  CTQ26486.1 206 ---WREQPAQTLLTLAARHPAAQKLSLLQGEFAV 236
                 ...*****************************96 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.25
                 ETTTTEEEEEEEEESGGGGGGGHHHHTTSEE CS
       T2SSL  19 svqeaevveeGqlalreglselaeypaadrv 49 
                 + + ++ v + +l+++++l++l+ +++ +++
  CTQ26486.1 288 WFPTEKKVINPRLQMQQHLQTLTRQAQHAPL 318
                 4444433444478888888888888877665 PP

>> GspL_C  GspL periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   6.5   7.2e-32   6.5e-28       4     156 ..     242     394 ..     239     396 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 7.2e-32
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---HHHHHHHHHHHHHHHTSTT-EEEEE CS
      GspL_C   4 wsaWrkvaillalallvvvaerllqlyqlerqaqalraqseeiyqqlfPeekrildlraqmrkqlrrlagkasgdallkllaalqtaleqvpelelqsl 102
                  + Wr +  +++++ l++ a+++l +  l+rqa+a +++s+++y + fP ek+++++r qm+++l+ l  +a+   l++ l+alq  l ++p+++l++l
  CTQ26486.1 242 QASWRPARYAALALALLAGANSVLDHRDLARQAEAAQQASRTFYHRWFPTEKKVINPRLQMQQHLQTLTRQAQHAPLVDRLSALQNILSETPGIRLRAL 340
                 578************************************************************************************************ PP

                 EEETTTTCEEEEEEESSCHHHHHHHHHHHCTEEEEEEEEEEETTEEEEEEEEEE CS
      GspL_C 103 dYdgkrgelrlqleakdfaafeqlrakaatkfqveqgqlasegdkvsgeltlrr 156
                 ++d++ + l+l++ a +  a+eq+ ++a+ +f v++g + ++ d ++g+ltl++
  CTQ26486.1 341 SWDAAGNRLQLDIAAVSSRALEQFTQRAQPRFRVRPGDMITKPDGIEGQLTLEE 394
                 ***************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3166.49
//
Query:       CTQ26487.1  [L=328]
Description: Type II secretion system protein K [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-81  272.4   6.8    5.1e-81  272.1   6.8    1.0  1  T2SSK     Type II secretion system (T2SS), protein K


Domain annotation for each model (and alignments):
>> T2SSK  Type II secretion system (T2SS), protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.1   6.8   2.8e-85   5.1e-81       3     279 ..      32     313 ..      30     314 .. 0.94

  Alignments for each domain:
  == domain 1  score: 272.1 bits;  conditional E-value: 2.8e-85
       T2SSK   3 qvqirrtenlrarqQaqwyalgaealarqiLredaredkkdvdhlgepWaqplaefpldggeisgrieDlqgrfNLnnL...vssaa...ekdpaalqv 95 
                 +v  + t+  +++ Qa+wyal+ae +a ++L++da ++++  ++l++ Waq+ ++f+ld+gei+++i+D +++fNLn++   +   +      p+   v
  CTQ26487.1  32 AVMYQHTAVTLDNLQARWYALAAENMAAALLQRDALDSPS-QTNLAQTWAQEGRRFTLDDGEIRATIRDGHACFNLNAIdhrA---DeagDGMPYPTDV 126
                 6778899999************************955554.9*************************************4432...35667889***** PP

       T2SSK  96 fqrLlealgldaaeaerladaladwldadsessssggaedsayasleppylpanqpladvseLrlvkgvtpelyarLrPyvtvlp.ektkiNiNta... 190
                 f rLl  lg ++ +a ++a al dw d+d ++ + +gaed+ y++++p yl+anqp++dvseLrl++g++++ly+rL+P+v+v p +++++N+Nt+   
  CTQ26487.1 127 FVRLLALLGEPPLRASQIAAALGDWTDSDGQP-RLNGAEDEVYMAQTPGYLAANQPMQDVSELRLLAGMDAALYQRLLPFVCVQPdDALQVNVNTLrps 224
                 *****************************666.9***************************************************************** PP

       T2SSK 191 saevLaAlveg.lslsqaqrllaaRpeagfrsvadflaasalsggsstaaakeqltvkSsyFelegrvrvdearvrlrsllerdedgvtv 279
                 +a +L Al++g l+l++aq+ll +Rp++g+ sva+fla+++l++ ++t+ a+ +ltv+S  F +  +v  ++ r++l+s+l++++ + tv
  CTQ26487.1 225 QAALLVALFPGdLTLQEAQQLLHNRPRTGWSSVAAFLAQPTLQK-TDTTLARPWLTVHSARFIAAFTVVTGNLRFQLHSVLQQEGRTFTV 313
                 ***************************************99999.88999********************************99987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2555.86
//
Query:       CTQ26488.1  [L=198]
Description: Type II secretion system protein J [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-37  126.5   1.2    1.1e-36  126.1   1.2    1.1  1  T2SSJ     Type II secretion system (T2SS), protein J
    2.6e-07   29.9   4.0    4.2e-07   29.3   4.0    1.4  1  N_methyl  Prokaryotic N-terminal methylation motif


Domain annotation for each model (and alignments):
>> T2SSJ  Type II secretion system (T2SS), protein J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   1.2   1.2e-40   1.1e-36       2     140 .]      59     190 ..      58     190 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.1 bits;  conditional E-value: 1.2e-40
                 HHHHCTBBS--EE-TTS-EEECEEE.TGCCTTCEEEEEEEEEEE-TTTEECSCEEEEEEEEEETTEEEEEEECCCTTCCGCB-EEEEEESSEEEEEEEE CS
       T2SSJ   2 erDlsqavarpvrdeygderpalag.dkedseqdeLeftRaGwanpeglaprselqrVgYrleegrLeRltwpvlDrasdtepqeqvlLegveelelrf 99 
                 + D++++++r++r++    + ++ag  + +s++++L+f+R+Gw+np g +prse+q V+Yrl++++LeRl++   D+  +++p+++vlL++v++++lrf
  CTQ26488.1  59 ADDVTHIIPRRARNS---DTFFFAGrFQLQSDDWGLAFSRSGWPNPLGILPRSEIQNVSYRLRQQQLERLSFDQQDPLTGSQPTVRVLLREVTAFRLRF 154
                 68***********99...33478888999********************************************************************** PP

                 E-TTSSEESSSS-SSS-HHC--SEEEEEEEETTTEEEEEEE CS
       T2SSJ 100 ldqdnqwqeeWppeaaeaaslPeaVeitlelkdlgeirrlf 140
                 + ++  wqe+W+  +    +lP+++eitl+l++ gei+rlf
  CTQ26488.1 155 YADG-RWQETWDRSQ----RLPQGLEITLTLANSGEITRLF 190
                 ****.*********8....9*******************98 PP

>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   4.0   4.6e-11   4.2e-07       3      26 ..       4      27 ..       2      28 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 4.6e-11
    N_methyl  3 kqrGFTLiElLvalaIlaillaaa 26
                k rGFTLiE L alaIla+l+aaa
  CTQ26488.1  4 KMRGFTLIETLLALAILAVLSAAA 27
                679*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      705  (0.0393218); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1458.41
//
Query:       CTQ26489.1  [L=121]
Description: Type II secretion system protein I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-25   87.7   5.8    6.2e-25   87.2   5.8    1.3  1  T2SSI     Type II secretion system (T2SS), protein I
    3.7e-08   32.6   5.0    5.4e-08   32.1   5.0    1.3  1  N_methyl  Prokaryotic N-terminal methylation motif


Domain annotation for each model (and alignments):
>> T2SSI  Type II secretion system (T2SS), protein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   5.8     7e-29   6.2e-25       1      79 [.      40     118 ..      40     119 .. 0.99

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 7e-29
                 HHHHHHHHHHHHHHHHHHHCSTS.TTSEEEEEEEEETTEEEEEEEEEEE-SSTTEEEEEEEEESSSHCCH-SEEEEEEE CS
       T2SSI   1 LeertlAgwvAeNrlaelrleeqwpaigesegevemagrrWywrveveatadpglrrvevsVaadkeeerplaslrtfv 79 
                 +ee++lA+w A+N+l++lrle++wpa  +se +ve ag rW +r++ ++ta p+lr+++v+V+++k++ +pla+lrt+v
  CTQ26489.1  40 MEEKILASWLADNQLVQLRLEKRWPALSWSETTVEAAGTRWFVRWQGVETALPQLRALDVEVRRQKSDPAPLATLRTWV 118
                 79***************************************************************************98 PP

>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   5.0     6e-12   5.4e-08       1      27 []       1      27 [.       1      27 [. 0.95

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 6e-12
    N_methyl  1 mrkqrGFTLiElLvalaIlaillaaal 27
                m++++G+TLiE++val+I+a++ +a++
  CTQ26489.1  1 MKREAGMTLIEVMVALVIFALAGLAVM 27
                89********************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 967.86
//
Query:       CTQ26490.1  [L=171]
Description: Type II secretion system protein H [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-06   27.4   4.2    2.5e-06   26.8   4.2    1.3  1  N_methyl  Prokaryotic N-terminal methylation motif


Domain annotation for each model (and alignments):
>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   4.2   1.4e-10   2.5e-06       3      27 .]       2      26 ..       1      26 [. 0.93

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.4e-10
    N_methyl  3 kqrGFTLiElLvalaIlaillaaal 27
                +qrGFTL+E++ +l+++++ ++++l
  CTQ26490.1  2 SQRGFTLLEMMLVLLLIGVSASMVL 26
                7*******************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1466.37
//
Query:       CTQ26491.1  [L=140]
Description: pseudopilin, cryptic, general secretion pathway [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-37  125.9   0.1    7.7e-37  125.7   0.1    1.0  1  T2SSG     Type II secretion system (T2SS), protein G
    4.6e-10   38.6   3.4    6.9e-10   38.1   3.4    1.3  1  N_methyl  Prokaryotic N-terminal methylation motif
  ------ inclusion threshold ------
       0.14   10.6   0.0       0.18   10.3   0.0    1.2  1  FUSC      Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> T2SSG  Type II secretion system (T2SS), protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7   0.1   1.3e-40   7.7e-37       1     108 []      29     135 ..      29     135 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.7 bits;  conditional E-value: 1.3e-40
                 XX--STTHHHHHHHHHHHHHHHHHHHHHHHHTSS---TTHHHHHHHS--SS-..SS--.STTT-.-S----STT---EEE---SSSS-EEEE--TTS-- CS
       T2SSG   1 kvlgqldkakvkkakaqikslekaldlYkldvgryPtteqgLeaLvekpsge..pknw.egpYlkkklpkDpWgnpyvyrspgehgefdllslGadgqe 96 
                 +++g+++ka+ +k+ +++ +le ald+Ykld++ryP+teqgL+aLv++p++e  ++n+ eg+Y+ ++lp+DpWgn+y+++spg+hg++d++s+G+dg +
  CTQ26491.1  29 NLMGNKEKADRQKVVSDLVALEGALDMYKLDNSRYPNTEQGLQALVTAPAAEphARNYpEGGYI-RRLPQDPWGNEYQLLSPGQHGAIDVFSVGPDGMP 126
                 689*************************************************9999********.********************************** PP

                 -SSSSSS-EEE- CS
       T2SSG  97 ggegedadignw 108
                 ++++   dignw
  CTQ26491.1 127 DTND---DIGNW 135
                 9999...99998 PP

>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   3.4   1.2e-13   6.9e-10       1      26 [.       1      26 [.       1      27 [. 0.94

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 1.2e-13
    N_methyl  1 mrkqrGFTLiElLvalaIlaillaaa 26
                m +qrGFTL+E++v+++Il+il++++
  CTQ26491.1  1 MQRQRGFTLLEIMVVIVILGILASLV 26
                789********************987 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0     3e-05      0.18     177     226 ..      26      75 ..      14      79 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3e-05
        FUSC 177 lageegaeareaararlaadilalealrsqaayesprirararalrrlls 226
                 + ++  + +++a+r+++++d++ale++++   ++++r +++ + l++l +
  CTQ26491.1  26 VVPNLMGNKEKADRQKVVSDLVALEGALDMYKLDNSRYPNTEQGLQALVT 75 
                 5555556666799*********************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1078.18
//
Query:       CTQ26492.1  [L=404]
Description: general secretory pathway component, cryptic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-57  191.4  16.0    3.7e-32  110.9   1.2    2.4  2  T2SSF     Type II secretion system (T2SS), protein F
  ------ inclusion threshold ------
       0.15   12.4   2.1        1.8    8.9   0.4    2.2  2  DUF5383   Family of unknown function (DUF5383)


Domain annotation for each model (and alignments):
>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   1.2   4.1e-36   3.7e-32       2     125 .]      70     192 ..      69     192 .. 0.99
   2 !   85.5   7.7     3e-28   2.7e-24       2     124 ..     273     393 ..     272     394 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.9 bits;  conditional E-value: 4.1e-36
                 HHHHHHHHHTT--HHHHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHCT-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH CS
       T2SSF   2 lrqlatllsaGvplveaLellaeeaengplaeelkriarrlraGgslsealertpssefpelvvqlirageeggnLaevLerlaeyleeerelrrklla 100
                 +rqlatl++aG+pl++aL+++a+++e + l+  ++ ++ ++ +G+sl+ea++ +p   f+ l++++++age++g+L+ vL+rla+y e++++lr++ll 
  CTQ26492.1  70 TRQLATLVAAGIPLEKALDAVAQQCEKPSLRTLMAGVRSKVLEGHSLAEAMRGYPA-CFDGLFCAMVAAGETSGHLDGVLNRLADYTEQRQQLRARLLQ 167
                 79*****************************************************8.****************************************** PP

                 HHHTTXXXXXXXXXXXXXXXXXXXX CS
       T2SSF 101 allepllllvvallvllillaillp 125
                 a+++p++l +va+ v++ill+ ++p
  CTQ26492.1 168 AMIYPIVLTLVAISVIAILLSTVVP 192
                 *********************9998 PP

  == domain 2  score: 85.5 bits;  conditional E-value: 3e-28
                 HHHHHHHHHTT--HHHHHHHHHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHCT-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH CS
       T2SSF   2 lrqlatllsaGvplveaLellaeeaengplaeelkriarrlraGgslsealertpssefpelvvqlirageeggnLaevLerlaeyleeerelrrklla 100
                 +r+l++l ++ vpl+ ++++ a++ +n + + +l+++ + +r+G sl++ale+t    fp++++ +i++ge++g L+++Ler+ae++ +e+  +++ ++
  CTQ26492.1 273 ARTLSILNASAVPLLLSMRISADVLSNAWARSQLAAASESVREGVSLHRALESTA--LFPPMMRYMIASGEQSGELTAMLERAAENQDRELSAQIQMAL 369
                 79***************************************************98..9***************************************** PP

                 HHHTTXXXXXXXXXXXXXXXXXXX CS
       T2SSF 101 allepllllvvallvllillaill 124
                 +l+epll++ +a++vl+i+lail 
  CTQ26492.1 370 SLFEPLLVVTMAGMVLFIVLAILQ 393
                 *********************985 PP

>> DUF5383  Family of unknown function (DUF5383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.4   0.00021       1.8      97     124 .]     170     197 ..     151     197 .. 0.82
   2 ?    2.9   0.1     0.015   1.4e+02      85     117 ..     352     387 ..     310     391 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00021
     DUF5383  97 lLpillillivllivvllivliPkvakq 124
                   pi+l l+ + +i++ll  ++Pkv++q
  CTQ26492.1 170 IYPIVLTLVAISVIAILLSTVVPKVVEQ 197
                 458899999999*************976 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.015
     DUF5383  85 sateqeseeksnlLpillill...ivllivvllivl 117
                  a e+++ e s++++++l l+   +v+ ++++++++
  CTQ26492.1 352 RAAENQDRELSAQIQMALSLFeplLVVTMAGMVLFI 387
                 333444458899999988774222666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       971  (0.0541581); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2935.67
//
Query:       CTQ26493.1  [L=497]
Description: general secretory pathway component, cryptic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-92  307.1   4.2    1.1e-91  306.7   4.2    1.1  1  T2SSE       Type II/IV secretion system protein
     0.0001   22.6   0.0    0.00025   21.3   0.0    1.6  1  AAA_22      AAA domain
    0.00036   21.0   0.6    0.00079   19.8   0.1    1.9  2  AAA_16      AAA ATPase domain
    0.00039   20.1   0.0    0.00096   18.9   0.0    1.6  1  AAA_29      P-loop containing region of AAA domain
     0.0046   16.7   0.0     0.0099   15.6   0.0    1.6  1  AAA_30      AAA domain
     0.0061   17.1   0.0      0.011   16.2   0.0    1.4  1  AAA_23      AAA domain
     0.0094   15.9   0.0      0.017   15.1   0.0    1.4  1  Rad17       Rad17 P-loop domain
  ------ inclusion threshold ------
      0.019   15.5   0.0      0.043   14.3   0.0    1.6  1  ABC_tran    ABC transporter
      0.031   13.8   0.0      0.063   12.8   0.0    1.4  1  AAA_7       P-loop containing dynein motor region
       0.04   14.5   0.1       0.11   13.0   0.0    1.8  2  AAA_18      AAA domain
      0.041   14.2   0.0       0.12   12.7   0.0    1.8  1  AAA_19      AAA domain
      0.047   13.3   0.4        1.2    8.7   0.0    2.7  3  AAA_25      AAA domain
      0.059   13.3   0.1       0.54   10.1   0.0    2.2  2  NTPase_1    NTPase
      0.086   12.7   0.0       0.14   12.1   0.0    1.3  1  ATPase_2    ATPase domain predominantly from Archaea
      0.087   12.1   0.0       0.18   11.1   0.0    1.4  1  Zeta_toxin  Zeta toxin
      0.092   12.8   0.0       0.16   12.0   0.0    1.4  1  AAA_14      AAA domain
       0.11   12.3   0.0       0.18   11.6   0.0    1.3  1  AAA_21      AAA domain, putative AbiEii toxin, Type IV TA sys
       0.11   12.5   0.1       0.27   11.2   0.1    1.7  1  AAA_5       AAA domain (dynein-related subfamily)
       0.24   10.8   0.0       0.38   10.1   0.0    1.2  1  SMC_N       RecF/RecN/SMC N terminal domain


Domain annotation for each model (and alignments):
>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.7   4.2   1.2e-94   1.1e-91       2     272 ..     120     386 ..     119     387 .. 0.99

  Alignments for each domain:
  == domain 1  score: 306.7 bits;  conditional E-value: 1.2e-94
       T2SSE   2 lilleallddekvsdihvekper.vkvrervdgielreveelekaalerlisriaalakldiseerplqdarlp....ekgvrlrvvllPvvagealvi 95 
                 ++l+ea+  +ek+sdih+e++er +++r+rvdg +lre+ ++++++++ lisri+++a+ldi+e+r++qd+r+     ++++++rv++lP+++ge++v+
  CTQ26493.1 120 AMLTEAI--KEKASDIHIETYERhLQIRFRVDG-VLREILRPQRRLAALLISRIKVMASLDIAEKRVPQDGRMAlrigGRAIDVRVSTLPSSHGERVVL 215
                 5788999..************************.*******************************************99******************** PP

       T2SSE  96 R..kksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnakkakvtfadll 192
                 R  +k++ +l+l +lg+ +al ++++++++++   +g+ilv+G+TgsGK+t+lya+l+ +++++++i+t+EDpvE++leg+ q+q+nak +++tfa++l
  CTQ26493.1 216 RllDKNSVNLDLLTLGMPPALLDRVDALIARP---HGIILVTGPTGSGKSTTLYAALSRLDARERNIMTIEDPVEYELEGIGQTQVNAK-VEMTFARGL 310
                 ********************************...******************************************************.********* PP

       T2SSE 193 raaLRlrPDrimvGEiRdketlei.lkAvnTGHlgslsTlHansaagalerLeqlgaeveaaelkssilavvdivvrlvrk 272
                 ra+LR++PD+++vGEiRd et++i ++A+ TGHl+ lsTlH+nsa ga++rL+++g  ve++ l++s+lav  +++rlvr+
  CTQ26493.1 311 RAILRQDPDVVLVGEIRDGETAQIaVQASLTGHLV-LSTLHTNSALGAISRLQDMG--VEPFLLSTSLLAV--MSQRLVRQ 386
                 ***********************************.********************..*************..******97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.7e-07   0.00025       4      55 ..     247     308 ..     245     326 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.7e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee..........erpevvfvtlpsstsskd 55 
                  +gi++vtG++G+GK+t+l   l++ld+++   +          e+ ++  v+++++++ + 
  CTQ26493.1 247 PHGIILVTGPTGSGKSTTLYAALSRLDARERNIMtiedpveyelEGIGQTQVNAKVEMTFAR 308
                 579***********************988655556666665555555555555555555444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       4.5   4.2e+03      82      82 ..     115     115 ..      37     175 .. 0.58
   2 !   19.8   0.1   8.4e-07   0.00079      20     106 ..     244     335 ..     235     394 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.5
      AAA_16  82 l 82 
                 +
  CTQ26493.1 115 I 115
                 1 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 8.4e-07
      AAA_16  20 rsgrp.elvllsGesGvGKsslvrellralekd.ggiflrgkcdql........esaipysa.laqalareellrqlldeaesaeleawrekleeala 106
                    rp +++l++G+ G+GKs+ + ++l +l ++ + i + ++ +++        + ++   + +a+ l r  +lrq  d     ++++ r+  ++++a
  CTQ26493.1 244 I-ARPhGIILVTGPTGSGKSTTLYAALSRLDAReRNIMTIEDPVEYelegigqtQVNAKVEMtFARGL-R-AILRQDPDV---VLVGEIRDGETAQIA 335
                 3.34559****************999988888842444444444442222221111122233344444.3.444444433...444444444444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     1e-06   0.00096      20      42 ..     246     268 ..     237     278 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1e-06
      AAA_29  20 dlkgatlltGpsGsGKSTllDAi 42 
                 +++g++l+tGp+GsGKST l A 
  CTQ26493.1 246 RPHGIILVTGPTGSGKSTTLYAA 268
                 56799*************98665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.1e-05    0.0099      10      67 ..     240     309 ..     237     338 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.1e-05
      AAA_30  10 vealltsgdrvavltGpAGtGKttalkalreaweaag...........grviglAptgkaAkv.Laeelg 67 
                 v+al++ ++ + ++tGp G+GK+t+l a+   ++a++           +++ g+  t+  Akv ++ + g
  CTQ26493.1 240 VDALIARPHGIILVTGPTGSGKSTTLYAALSRLDARErnimtiedpveYELEGIGQTQVNAKVeMTFARG 309
                 6788999999***************998855555554357777777777777777777777766665555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.2e-05     0.011      19      38 ..     248     267 ..     240     312 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.2e-05
      AAA_23  19 kgltlItGpNGaGKTTildA 38 
                 +g+ l+tGp+G+GK+T l A
  CTQ26493.1 248 HGIILVTGPTGSGKSTTLYA 267
                 79**************9865 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.8e-05     0.017      38      63 ..     241     266 ..     236     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.8e-05
       Rad17  38 dvLesrkkriLLisGPsGCgkstvvk 63 
                 d L  r++ i+L++GP+G gkst++ 
  CTQ26493.1 241 DALIARPHGIILVTGPTGSGKSTTLY 266
                 5688899****************985 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.5e-05     0.043      13      61 ..     250     302 ..     241     350 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.5e-05
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkei 61 
                 ++ ++G++G+GKSt l + +  l+  e +i   ++++++    +  +++++++
  CTQ26493.1 250 IILVTGPTGSGKSTTLYAALSRLDARERNIMTIEDPVEYelegIGQTQVNAKV 302
                 67899********9776666666666666644445555545554444444444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.6e-05     0.063      35      67 ..     250     282 ..     240     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.6e-05
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylslti 67 
                  +l++GptG+GK++++   l++ld ++ +++ti
  CTQ26493.1 250 IILVTGPTGSGKSTTLYAALSRLDARERNIMTI 282
                 5799********************988877776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       6.2   5.9e+03      97      97 ..     133     133 ..      64     189 .. 0.62
   2 ?   13.0   0.0   0.00012      0.11       1      44 [.     251     292 ..     251     345 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6.2
      AAA_18  97 v 97 
                 +
  CTQ26493.1 133 I 133
                 2 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00012
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe 44 
                 Il+tG+ G+GK+t   +  +rl    + r + + +++++++ + 
  CTQ26493.1 251 ILVTGPTGSGKSTTLYAALSRL--DARERNIMTIEDPVEYELEG 292
                 99*********98766554444..66666666666666666655 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00013      0.12       7      38 ..     245     276 ..     240     283 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelg 38 
                 a +++++lvt++ G+GK+++l ++++ l +++
  CTQ26493.1 245 ARPHGIILVTGPTGSGKSTTLYAALSRLDARE 276
                 77899****************99999887665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.21     2e+02      73     125 ..      66     114 ..      42     140 .. 0.67
   2 ?    8.7   0.0    0.0012       1.2      30      52 ..     245     267 ..     219     275 .. 0.76
   3 ?   -2.5   0.0       3.3   3.1e+03     145     178 ..     436     470 ..     433     472 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.21
      AAA_25  73 kVlyvsaEdsedelrrRlravgeal.......rddarllvldlagveslpLfakdrggtl 125
                 kVl++s   + +e +r ++ +g +l       +++++ ++ld           ++++ ++
  CTQ26493.1  66 KVLVLSYQRDSAEAHRMMADIGNELdlytlaeELPDTDDLLD-----------SEDDAPI 114
                 899********9**********99866644442233333333...........2222222 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0012
      AAA_25  30 lpagelallaGapgtGKttlald 52 
                  + ++++l++G++g+GK+t ++ 
  CTQ26493.1 245 ARPHGIILVTGPTGSGKSTTLYA 267
                 345899*************8765 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.3
      AAA_25 145 lvviDplsralgg.densnsdvgalvealeriarr 178
                 l+ iD   ra  + +en+ + +++l  a++ ++++
  CTQ26493.1 436 LLLIDDRVRAAIHrGENEITLIQQLGPAWQTLRHA 470
                 67788888866665999999999999999998875 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00058      0.54       2      28 ..     251     277 ..     250     285 .. 0.86
   2 ?    0.5   0.0      0.52   4.9e+02      71     135 ..     293     352 ..     277     372 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00058
                 EEEE--TTSSHHHHHHHHHHHH...GG CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgv 28 
                 +++TGp G+GK+T +  +l+ l+ ++ 
  CTQ26493.1 251 ILVTGPTGSGKSTTLYAALSRLDARER 277
                 78*************999999987665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.52
                 ETTEEE-HHHHHHHHHHHHHHHH.HHH-EEEE---STTGGG-HHHHHHHHHHHTTTSEEEEE--SS CS
    NTPase_1  71 vgkyvvdvesfeelalealrkal.seadviviDEiGkmElkskkfkeaveevLksekpvlavihrr 135
                 +g+ +v+  ++e  +++ lr  l +++dv+++ Ei   E      + av+  L+ +  vl ++h +
  CTQ26493.1 293 IGQTQVN-AKVEMTFARGLRAILrQDPDVVLVGEIRDGETA----QIAVQASLTGH-LVLSTLHTN 352
                 6777777.455666666666655678899999998554443....33444444333.355555555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014      0.14      15      52 ..     244     280 ..     236     338 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
    ATPase_2  15 lerepneiyfiYGpegsGKtaLlkeiienledkdkyvi 52 
                 + r p  i++++Gp gsGK++ l  ++++l+  + +++
  CTQ26493.1 244 IAR-PHGIILVTGPTGSGKSTTLYAALSRLDARERNIM 280
                 444.889******************9999977666544 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00019      0.18      18      49 ..     250     282 ..     241     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
  Zeta_toxin  18 lillgGqpGAGKselaellkdele.rqgnvvrl 49 
                 +il+ G +G+GKs+++ ++  +l+ r++n+ ++
  CTQ26493.1 250 IILVTGPTGSGKSTTLYAALSRLDaRERNIMTI 282
                 68999******************9777777766 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00017      0.16       3      40 ..     249     284 ..     247     364 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldd 40 
                  i+++tG+  +GK+t l+  +++l +++++i+ i+  d
  CTQ26493.1 249 GIILVTGPTGSGKSTTLYAALSRLDARERNIMTIE--D 284
                 689****************9988776666665553..3 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00019      0.18       2      77 ..     251     305 ..     250     332 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglr 77 
                  +++Gp gsGKS+ L+a                        r ++++ +   +e p+e+e+e  +++ v+ + +++
  CTQ26493.1 251 ILVTGPTGSGKSTTLYAA---------------------LSRLDARERNIMTIEDPVEYELEGIGQTQVNAKVEMT 305
                 689**************9.....................4455666666666666666666655555555555554 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00029      0.27       2      94 ..     251     346 ..     250     384 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00029
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--..........--------.....G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik.ngttslvdsplvraar.....egeilvlDEveraesevlnsLlslleerr 93 
                 +l+ Gp+G+gKs+     +++l  re +++ + +  +  +l g  +++ n + +++        r      +++++++E+   e++ +++  sl  +  
  CTQ26493.1 251 ILVTGPTGSGKSTTLYAALSRLdARERNIMTIEDPVE-YELEGIGQTQvNAKVEMTFARGL---RailrqDPDVVLVGEIRDGETAQIAVQASLTGHLV 345
                 6889*********999999999667777776666555.55666655433333333333333...24447899999999998877766666655554444 PP

                 E CS
       AAA_5  94 l 94 
                 l
  CTQ26493.1 346 L 346
                 4 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00041      0.38      24     102 ..     248     325 ..     240     349 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00041
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--..BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk..skekasvkkaeveitfdnedkklkiekeevsisrr 102
                 +++  ++Gp GSGKs  l A    L+  +a++    +++d + +  +  ++ + +a+ve+tf    +++  ++++v++  +
  CTQ26493.1 248 HGIILVTGPTGSGKSTTLYAA---LSRLDARERNIMTIEDPVEYelEGIGQTQVNAKVEMTFARGLRAILRQDPDVVLVGE 325
                 567899************999...555556555667788888876667788888999999998877776666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                       131  (0.0073066); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3651.85
//
Query:       CTQ26494.1  [L=657]
Description: general secretory pathway component, cryptic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-50  170.5   5.1    4.6e-50  169.6   5.1    1.5  1  Secretin         Bacterial type II and III secretion system p
    7.8e-41  138.4  25.4    4.2e-17   62.3   1.1    4.3  4  Secretin_N       Bacterial type II/III secretion system short
  ------ inclusion threshold ------
        7.9    6.5   7.3        3.1    7.9   0.2    3.2  3  Spore_YhcN_YlaJ  Sporulation lipoprotein YhcN/YlaJ (Spore_Yhc


Domain annotation for each model (and alignments):
>> Secretin  Bacterial type II and III secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.6   5.1   7.8e-54   4.6e-50       1     170 []     427     592 ..     427     592 .. 0.93

  Alignments for each domain:
  == domain 1  score: 169.6 bits;  conditional E-value: 7.8e-54
    Secretin   1 aleqegkakvlstPklltldneeAeievgqevpvqvtsetgsstgatttatevefkevglsLkvtPqvtedgsirlkidvevssiassqavtaegnsvp 99 
                 al++++k  +l+tP+++tldn +A+++vgqevpv + s+t+  +g++  +t ve+k+vg++Lkv+Pq++e++ + l+i++evss+a+s++  ++ + + 
  CTQ26494.1 427 ALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGSQTT--SGDNIFNT-VERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASS-TSSDLGA 521
                 78999******************************444444..34455555.**********************************98765.6889*** PP

    Secretin 100 tisrrelkttvrvkdgetlviGGliqdeeseseskvPlLgdiPllGaLFksttkskektellifitPrivk 170
                 t+++r ++  v v +get+v+GGl++++ +++ +kvPlLgdiP++GaLF+s++k+ +k++l++fi+P+i++
  CTQ26494.1 522 TFNTRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLMLFIRPTIIR 592
                 *********************************************************************96 PP

>> Secretin_N  Bacterial type II/III secretion system short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.5   6.2e-14   3.7e-10       1      80 [.     126     187 ..     126     189 .. 0.96
   2 !   53.0   1.1   5.6e-18   3.4e-14       1      81 [.     191     261 ..     191     262 .. 0.90
   3 !   62.3   1.1     7e-21   4.2e-17       1      82 []     266     343 ..     266     343 .. 0.94
   4 ?   -3.0   2.3       1.7     1e+04      31      59 ..     477     534 ..     387     539 .. 0.52

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 6.2e-14
                 EEEEE-SSS-HHHHHHHHHHHCCTT.............SSTT-TTSEEEEETTTTEEEEEECHHHHHHHHHHHHHHCTSS CS
  Secretin_N   1 vrvfpLkyasaadlasiLrellgggggesassgassqsgallgkggrvvadprtNsllvrgspervarirqlikqLDvpr 80 
                 +rv+pL ++ a dla++Lr+l                   ++++ g+vv ++ +N ll++g+++++ r+ ++++++D + 
  CTQ26494.1 126 TRVVPLTNVAARDLAPLLRQLN------------------DNAGAGSVVHYEPSNVLLMTGRAAVIKRLLTIVERVDNAG 187
                 79********************..................99***********************************876 PP

  == domain 2  score: 53.0 bits;  conditional E-value: 5.6e-18
                 EEEEE-SSS-HHHHHHHHHHHCCTT.............SSTT-TTS.EEEEETTTTEEEEEECHHHHHHHHHHHHHHCTSSS CS
  Secretin_N   1 vrvfpLkyasaadlasiLrellgggggesassgassqsgallgkgg.rvvadprtNsllvrgspervarirqlikqLDvpra 81 
                 v ++pL  asaa+++++++el ++           ++++al+g+ + +vvad+rtN++lv+g+p  ++ri  +ikqLD+++a
  CTQ26494.1 191 VVTVPLSWASAAEVVKLVTELNKD-----------TSKSALPGSMVaNVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQA 261
                 579*******************44...........456677777777********************************987 PP

  == domain 3  score: 62.3 bits;  conditional E-value: 7e-21
                 EEEEE-SSS-HHHHHHHHHHHCCTT.............SSTT-TTSEEEEETTTTEEEEEECHHHHHHHHHHHHHHCTSSSE CS
  Secretin_N   1 vrvfpLkyasaadlasiLrellgggggesassgassqsgallgkggrvvadprtNsllvrgspervarirqlikqLDvpraq 82 
                 ++v++Lkya+aadl+++L+++ ++ +++    ++s++  a+ +k++ ++a+ +tN+l+v++ p++++ ++++i+qLD++r+q
  CTQ26494.1 266 TKVIYLKYAKAADLVEVLTGISSSLQSD----KQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQ 343
                 68********************777665....6899999*****************************************98 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 1.7
                 .....................................SSTT-TTSEEEEETTTTEEEE CS
  Secretin_N  31 s.............................sgassqsgallgkggrvvadprtNsllv 59 
                                               s a s+s+++++ g ++     +N++lv
  CTQ26494.1 477 ErktvgiklkvkpqinegdavlleieqevsSVADSASSTSSDLGATFNTRTVNNAVLV 534
                 0333334444444444444444444444443344444444444444444445566665 PP

>> Spore_YhcN_YlaJ  Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2   0.00052       3.1     105     146 ..     225     264 ..     212     269 .. 0.86
   2 ?    0.3   0.1      0.11   6.5e+02     107     144 ..     306     343 ..     302     354 .. 0.78
   3 ?   -0.2   0.3      0.16   9.6e+02      74     104 ..     527     556 ..     522     558 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00052
  Spore_YhcN_YlaJ 105 VketVekvvddiknVyVvtdpdvvdrirtmddrlrtgaaiee 146
                      V ++V   + + ++V V+  p+  +ri  m ++l++ +a+++
       CTQ26494.1 225 VANVVA--DERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQG 264
                      667776..45568*************************9987 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.11
  Spore_YhcN_YlaJ 107 etVekvvddiknVyVvtdpdvvdrirtmddrlrtgaai 144
                      + + k  ++ ++ +V++ pdv+++ ++   +l+  ++ 
       CTQ26494.1 306 NIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQ 343
                      55666777779999************999998876665 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.16
  Spore_YhcN_YlaJ  74 gVedarvlvtgndvlVavqtdesdnekvkkk 104
                       V++a  +  g++v+V+  +d +  +++++k
       CTQ26494.1 527 TVNNAVLVGSGETVVVGGLLD-KTVTDTADK 556
                      79999999*********9999.555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4670.10
//
Query:       CTQ26495.1  [L=280]
Description: Type II secretion system protein C [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-23   81.4   0.0      9e-23   80.7   0.0    1.3  1  T2SSC        Type II secretion system protein C
    3.6e-05   24.0   0.0    6.6e-05   23.2   0.0    1.4  1  PDZ_2        PDZ domain
      7e-05   22.6   0.3     0.0004   20.2   0.1    2.1  2  PDZ_6        PDZ domain
  ------ inclusion threshold ------
      0.019   14.9   0.0      0.046   13.7   0.0    1.6  2  Tricorn_PDZ  Tricorn protease PDZ domain
      0.062   13.7   0.1       0.14   12.5   0.1    1.6  1  PDZ          PDZ domain


Domain annotation for each model (and alignments):
>> T2SSC  Type II secretion system protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   2.5e-26     9e-23       3     139 ..      27     162 ..      23     163 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 2.5e-26
       T2SSC   3 llallalllarltWlllap.apaeaaaaseapsaaskaadaldvakl.aslnLFGkaeeqaeaakea.evvdaPeTrlnLtLlGvvassepeeglAiIa 98 
                 +l++++ +la+ltW+++ p +p+  +a +  + +++      +++++  +++LFG a ++++++++a +++++P ++l+L+L G++ass+p++++AiI+
  CTQ26495.1  27 ILITAIPQLAKLTWRVVFPvSPEDISALPLTMPPPA----DPELKNVrPAFTLFGLAVKNSPTPTDAaSLNQVPVSSLKLRLAGLLASSNPARSIAIIE 121
                 36778889*********7755777777777666666....55555551579*************999999***************************** PP

       T2SSC  99 ergkqeetYriGdeieg.gakLeaVyaDrViikrnGrletLm 139
                 + ++q  ++  Gd ++g +a+++a+ +Dr+i++++Gr+e + 
  CTQ26495.1 122 KGNQQ-VSLSTGDPLPGyDARIAAILPDRIIVNYQGRKEAIL 162
                 ***99.*********************************886 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.8e-08   6.6e-05      27      79 ..     222     274 ..     217     277 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.8e-08
                 GGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEE CS
       PDZ_2  27 aakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktve 79 
                 + ++gl+a+D  ++++g ++ ++e+ +++l++    ++++ltv+R+g+++++ 
  CTQ26495.1 222 FRQSGLQANDLAIALNGIDLRDQEQAQQALQNLADMTEITLTVEREGQRHDIA 274
                 6899********************************************99875 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.32   1.2e+03      24      47 ..      91     113 ..      91     121 .. 0.81
   2 !   20.2   0.1   1.1e-07    0.0004       9      56 .]     220     266 ..     212     266 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.32
       PDZ_6  24 svNGqpveglsla.dvaallrgsag 47 
                 s+N +pv   sl+  +a ll++s++
  CTQ26495.1  91 SLNQVPV--SSLKlRLAGLLASSNP 113
                 6899999..9999999999996654 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.1e-07
       PDZ_6   9 sPAdrAGlrvGDiilsvNGqpveglsladvaallr.gsagesvvlvvrr 56 
                 s   + Gl+++D+ +++NG+++  ++ ++++++l+  +  ++++l+v+r
  CTQ26495.1 220 SLFRQSGLQANDLAIALNGIDL--RDQEQAQQALQnLADMTEITLTVER 266
                 777899****************..***********77777899999987 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.3   1.2e+04      64      75 ..     119     130 ..     112     133 .. 0.77
   2 ?   13.7   0.0   1.3e-05     0.046      30      81 ..     219     269 ..     203     274 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.3
                  HHTTTTSEEEEE CS
  Tricorn_PDZ  64 LvgkagkeveLt 75 
                  +++k++++v+L+
   CTQ26495.1 119 IIEKGNQQVSLS 130
                  678889999886 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.3e-05
                  B-GGGGGS---.TT-EEEEETTEE-BTTB-HHHHHHTTTT.SEEEEEEE-STT CS
  Tricorn_PDZ  30 rSPLaepGvnvreGdlilavdgepvskekgiaelLvgkag.keveLtvkrkdg 81 
                   S ++++G++  + dl +a++g +++ +++ +++L + a+ +e++Ltv+r+++
   CTQ26495.1 219 ASLFRQSGLQ--ANDLAIALNGIDLRDQEQAQQALQNLADmTEITLTVEREGQ 269
                  4556789999..57999**********************9899*****99654 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.9e-05      0.14      41      82 .]     224     265 ..     212     265 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.9e-05
                 HHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTS..EEEEEEE CS
         PDZ  41 adglkvGDkIlsvNgvdvenvsheeavqaikgskg..kvtLtil 82 
                 ++gl+++D  ++ Ng d+++   e+a+qa+++  +  ++tLt++
  CTQ26495.1 224 QSGLQANDLAIALNGIDLRDQ--EQAQQALQNLADmtEITLTVE 265
                 466****************98..99999999999889****995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2227.69
//
Query:       CTQ26496.1  [L=1102]
Description: Pullulanase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-47  161.0   0.0    3.4e-47  160.0   0.0    1.5  1  DUF3372          Domain of unknown function (DUF3372)
    3.3e-35  120.4   2.0    7.8e-35  119.2   2.0    1.7  1  Pullulanase_Ins  Pullulanase Ins domain
    3.5e-34  118.0   0.1    3.5e-34  118.0   0.1    2.8  4  Pullulanase_N2   Pullulanase N2 domain
    8.8e-19   67.6   0.3    2.1e-18   66.4   0.3    1.7  1  CBM_48           Carbohydrate-binding module 48 (Isoamylase N
      3e-10   40.8   0.5    1.3e-09   38.8   0.1    2.3  2  PUD              Bacterial pullanase-associated domain
      4e-06   26.6   0.9       0.01   15.4   0.2    2.8  3  Alpha-amylase    Alpha amylase, catalytic domain
     0.0055   15.8   0.0      0.011   14.9   0.0    1.4  1  hDGE_amylase     Glycogen debranching enzyme, glucanotransfer
  ------ inclusion threshold ------
      0.059   13.1   3.3       0.11   12.2   3.3    1.4  1  Collagen         Collagen triple helix repeat (20 copies)
      0.075   13.4   0.1          2    8.8   0.1    2.6  1  DUF3459          Domain of unknown function (DUF3459)
      0.082   10.9   0.1       0.12   10.3   0.1    1.1  1  GHL5             Hypothetical glycoside hydrolase 5


Domain annotation for each model (and alignments):
>> DUF3372  Domain of unknown function (DUF3372)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.0   1.9e-50   3.4e-47       2     164 ..     925    1085 ..     924    1088 .. 0.96

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 1.9e-50
     DUF3372    2 qdnnfgvGLPpaeknednwplikplladpalkpsaadiaaasaafqelLriRksspLfrLrtaeevqkrvsFhntGpdqqpGlivmsiddgt.glad 97  
                  qdnn++vG+P+++++++n+++i+++ +d+ ++p ++++++++a++qel ++RksspLf+L++++ v krv+F+ntG+dqq+Gl+vm+iddg  ++a+
  CTQ26496.1  925 QDNNYNVGMPRSSDDGSNYDIIARV-KDAVATPGETELKQMTAFYQELTALRKSSPLFTLGDGATVMKRVDFRNTGADQQTGLLVMTIDDGMqAGAS 1020
                  89*********************99.9****************************************************************9989** PP

     DUF3372   98 ldpkldalvvvfNaspeeqsitvpelagkkleLhpvqaesad.evvkqasfeeatgtftvPartvaVF 164 
                  ld+++d++vv +Na+pe++++++  +ag++l+L+ +q+++ d ++++++++++ +g++t+Pa++vaV+
  CTQ26496.1 1021 LDSRVDGIVVAINAAPESRTLQD--FAGTSLQLSAIQQAAGDrSLASGVQVAA-DGSVTLPAWSVAVL 1085
                  ********************998..99*************8857788888888.7************8 PP

>> Pullulanase_Ins  Pullulanase Ins domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   2.0   4.3e-38   7.8e-35       1      74 []     501     574 ..     501     574 .. 0.99

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 4.3e-38
  Pullulanase_Ins   1 iatinEdpdkvadidqpFskLCevnpavknseFaeyCsssktiaevleelkkdDskenpqVqeLnrlvaetDsf 74 
                      +at+nE++dkvadi+qpFs+LCevn+avk+seFa yC+s++t++evl +lk++Dsk+npqVq+Ln+lva+tDs+
       CTQ26496.1 501 LATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVEEVLTQLKQNDSKDNPQVQALNTLVAQTDSY 574
                      69***********************************************************************9 PP

>> Pullulanase_N2  Pullulanase N2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.1     2e-37   3.5e-34       2     112 .]     196     305 ..     195     305 .. 0.99
   2 ?   -3.1   0.1       7.9   1.4e+04      48      69 ..     463     486 ..     433     491 .. 0.60
   3 ?   -3.5   0.0        10   1.8e+04      45      71 ..     779     805 ..     768     811 .. 0.60
   4 ?   -3.0   0.4       7.4   1.3e+04      86     107 ..    1050    1070 ..    1045    1071 .. 0.78

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 2e-37
  Pullulanase_N2   2 arAhWvdrrtlawpasaaaasvrLvasaeaglaadedgvegadealeLtpagltaaqkakfphLagytalrvpeeaqvkellrgqlvvaaadadg 96 
                     a AhWvd++tl+wp+ ++++ vrL++s++ ++aad++g e +d++++Ltp++++++++ +fphLa+y+a+++p++++v+ell+g+ v++aa++dg
      CTQ26496.1 196 ADAHWVDKTTLLWPGGENKPIVRLYYSHSSKVAADSNG-EFSDKYVKLTPTTVSQQVSMRFPHLASYPAFKLPDDVNVDELLQGETVAIAAESDG 289
                     78************************************.******************************************************** PP

  Pullulanase_N2  97 kvlaaTgVQlpgvLDD 112
                      +++aT+VQ++gvLDD
      CTQ26496.1 290 ILSSATQVQTAGVLDD 305
                     ***************9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7.9
  Pullulanase_N2  48 eLtpa..gltaaqkakfphLagyt 69 
                     eL+ +  +lta+ ++ + hL++  
      CTQ26496.1 463 ELRGKylALTAQESNMVQHLKQLS 486
                     333334456666666666666655 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 10
  Pullulanase_N2  45 ealeLtpagltaaqkakfphLagytal 71 
                     +   + p++lt    ++ +hLa+ t l
      CTQ26496.1 779 SGAGVLPNELTTLSDDQARHLADLTRL 805
                     444445556666666667777777665 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 7.4
  Pullulanase_N2   86 qlvvaaadadgkvlaaTgVQlp 107 
                      ql +++++a ++ l a+gVQ++
      CTQ26496.1 1050 QLSAIQQAAGDRSL-ASGVQVA 1070
                      77888887777766.899*987 PP

>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.3   1.2e-21   2.1e-18       2      84 .]     316     400 ..     315     400 .. 0.93

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 1.2e-21
                 SEEEEESSCEEEEEEEE-TTSSEEEEEECGTT.TEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEETT..S...CEEEE--TT- CS
      CBM_48   2 lGahvsedekgvnfrvwapnAekVslvldfnn.wdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgps..g...ekklllDPya 84 
                 +Ga+ ++   gv+frvwap+A++V+lv+++ + +   ++p++r++ +g W++   +dl+ g ++Y+y +++++  +   e++ ++DPya
  CTQ26496.1 316 YGAQLTDS--GVTFRVWAPTAQQVELVIYSADkKVIASHPMTRDSASGAWSWQGGSDLK-G-AFYRYAMTVYHpqSrkvEQYEVTDPYA 400
                 89999876..**********************99*************************.6.5**********872578*********8 PP

>> PUD  Bacterial pullanase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.1     7e-13   1.3e-09      11      91 ..      89     180 ..      81     181 .. 0.86
   2 ?   -3.5   0.0        10   1.8e+04      17      26 ..     361     370 ..     356     398 .. 0.59

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 7e-13
                 ---TTEEEEEES.----EE............E---EEETTEEEEEEEESS--.EEEEEEE..ETTEEEE.EEEEE-B.TTEEEEEEETT----B CS
         PUD  11 gnydgwgLwlWgdgedgss............fpftgtddygayadvelkedd.kvgfiirkkgddkdvgeDrkidlskdgvnevwlvsgdekvy 91 
                  +y+  +L+lW+++++ ++             ++tg d+yg y+ ++l +++ ++++i+r +g++k +++D  +++s+   ++v ++ g+++vy
  CTQ26496.1  89 ADYATKNLYLWNNETC-DAlsapvadwndvsTTPTGSDKYGPYWVIPLTKESgCINVIVR-DGTNKLIDSDLRVSFSDFTDRTVSVIAGNSAVY 180
                 5999*******53333.334688888888877****************9999********.55569999********989999*********99 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 10
                 EEEEES.--- CS
         PUD  17 gLwlWgdged 26 
                 g w W++g+d
  CTQ26496.1 361 GAWSWQGGSD 370
                 5677732222 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   5.8e-06      0.01      51      85 ..     600     635 ..     568     661 .. 0.80
   2 !    8.5   0.0   0.00074       1.3     152     227 ..     674     739 ..     665     755 .. 0.72
   3 ?   -2.3   0.0       1.4   2.4e+03     279     328 ..     844     899 ..     838     902 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.8e-06
                    CCCCCCHHHHHHC.TT-EEEEEE--SC--TTSCCCH CS
  Alpha-amylase  51 nedlkeLiskahe.kgikvilDlVvNHtsdehewfk 85 
                     +++ ++i+++++ +g+ vi+D+V NHt  +   ++
     CTQ26496.1 600 IKEFRTMIQAIKQdLGMNVIMDVVYNHTNAAGPTDR 635
                    478999999997538*************87766555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00074
                    CCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC- CS
  Alpha-amylase 152 rkelkdvvkfwlekg.idGfRlDvvkhvskvealesngeflheftqalnetvasrkevmtvgEvssdasedlrvytt 227
                     k + d + +w  +  idGfR D + + +k       ++ l     a ++ +a + +++ +gE ++++++d    ++
     CTQ26496.1 674 AKLIADSLAVWTTDYkIDGFRFDLMGYHPK-------AQIL----SAWERIKALNPDIYFFGEGWDSNQSDRFEIAS 739
                    5667788889987766**************.......3333....33444444459999999999988876655555 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.4
                    TCEEES--TTS--HHHHTTSSTTTT......HHHHHHHHHCCCTSSSEEEEETTCC CS
  Alpha-amylase 279 eavtflgnHDqeRilsrlgddsaea......ekklklaaillltlrGvpviYyGeE 328
                    e v+++  HD++ +  ++++++a++      ++   + ++ +++ +G+++  +G E
     CTQ26496.1 844 EVVNYVSKHDNQTLWDMISYKAAQEadldtrVRMQAVSLATVMLGQGIAFDQQGSE 899
                    56788888999888888888887667776542222222333344466666666665 PP

>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.1e-06     0.011      73     105 ..     597     629 ..     578     633 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.1e-06
                   SSC.HHHHHHHHHHHHHH--EEEEEE--SEEET CS
  hDGE_amylase  73 eekeedveklvkklekeygllsltDvVlnHtan 105
                   + + ++++++++ +++++g+  ++DvV+nHt+ 
    CTQ26496.1 597 TARIKEFRTMIQAIKQDLGMNVIMDVVYNHTNA 629
                   45678999***********************86 PP

>> Collagen  Collagen triple helix repeat (20 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.3   6.3e-05      0.11      37      53 ..      30      46 ..      23      51 .. 0.39

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.3e-05
                ----------------- CS
    Collagen 37 GppGaaGkpGapGekGe 53
                G+pG++G+pG+pG++G+
  CTQ26496.1 30 GSPGSPGNPGNPGTPGT 46
                22222222222222222 PP

>> DUF3459  Domain of unknown function (DUF3459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0011         2      45      91 .]    1028    1085 ..     967    1085 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0011
                  EEEEEE-SSCGCCS-...........SS---SEEEEECT--S....SSEE-TTEEEEE CS
     DUF3459   45 lrllaNLgdepvtlp...........pegaagkllfsseaaraggdagrlppesvvvl 91  
                  +++++N  +e +tl             ++aag+  ++s+ ++a++++++lp++sv+vl
  CTQ26496.1 1028 IVVAINAAPESRTLQdfagtslqlsaIQQAAGDRSLASGVQVAADGSVTLPAWSVAVL 1085
                  3456666666666668888888888889999999999999999999*********985 PP

>> GHL5  Hypothetical glycoside hydrolase 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   6.9e-05      0.12     247     330 ..     546     629 ..     534     653 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.9e-05
        GHL5 247 effaiaeeeveeeeseeevkvklkkpntqnwGyd....vpilgsaatnpavlgslrPdelvdfiatlhnfstgpiqviydlvyGhadn 330
                  + ++++++++++ + + ++  + ++++ nwGyd     +  gs at+p   g+ r +e   +i+++ +  +  ++vi d+vy h++ 
  CTQ26496.1 546 VLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDpfhyTVPEGSYATDPE--GTARIKEFRTMIQAIKQ--DLGMNVIMDVVYNHTNA 629
                 344566666666668889999999**********4433233588999997..899********999985..56799*********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 7831.52
//
Query:       CTQ26497.1  [L=185]
Description: General secretion pathway protein B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-20   71.7   0.0    3.9e-20   71.2   0.0    1.2  1  T2SSB     Type II secretion system protein B


Domain annotation for each model (and alignments):
>> T2SSB  Type II secretion system protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   2.2e-24   3.9e-20       1      59 [.     110     168 ..     110     169 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 2.2e-24
                 B--B-EEEEE--SSGGG-EEEETTEEE-TT--SBTTEEEEEE-SSEEEEEETTEEEEEE CS
       T2SSB   1 lPaLnisahvYssdpakRwvkiNgqelreGdeiapgltleeIepdgvvlrfkgqrfklp 59 
                 lP+L++sahvY+s p+kR++++Ng+ + eGd+  p+l++e+I++d ++++f+g++f l 
  CTQ26497.1 110 LPPLRYSAHVYASLPEKRSIVLNGKAWTEGDSPLPNLVVEQIQQDVTIFSFNGTTFTLA 168
                 8*******************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1494.31
//
Query:       CTQ26498.1  [L=125]
Description: Pullulanase secretion protein PulS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-35  120.9   0.5    2.8e-35  120.7   0.5    1.0  1  T2SS_PulS_OutS  Type II secretion system pilotin lipoprotein 
  ------ inclusion threshold ------
      0.033   14.7   0.5      0.065   13.7   0.5    1.5  1  LPAM_1          Prokaryotic membrane lipoprotein lipid attach
       0.04   13.0   0.1      0.047   12.8   0.1    1.0  1  DUF1908         Domain of unknown function (DUF1908)


Domain annotation for each model (and alignments):
>> T2SS_PulS_OutS  Type II secretion system pilotin lipoprotein (PulS_OutS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.5   4.7e-39   2.8e-35       1     105 [.      16     119 ..      16     120 .. 0.97

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 4.7e-39
                     XXXXXXXXXXXXXXXX--HHHHHHHHHHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHTT--GGG-TTHHHHHHHHHHHHHHSSS-HHHHHH CS
  T2SS_PulS_OutS   1 lagCqakapikkkaesvsaneqieqlsslvaaikYLkqkCnrsdLpddatilkvalkvakqrgWdtdeyqslpqrserlYqgLlkdstpkekqCs 95 
                     l+gCq+k ++     ++s++ q+eqlss+ a+++YLk+kCnrsdLp+d+ti + a++v k rgW   + ++l+q+s+rlYq Ll+dstp+++qCs
      CTQ26498.1  16 LSGCQQKPASTLSP-AISSQAQLEQLSSVAAGTRYLKNKCNRSDLPADETIYRAAVNVGKARGWGNIDVATLSQNSDRLYQQLLQDSTPEATQCS 109
                     89****98887776.8999**************************************************************************** PP

                     HHHHHTHHHH CS
  T2SS_PulS_OutS  96 slnktltpfi 105
                     ++n+ l pfi
      CTQ26498.1 110 QFNRQLAPFI 119
                     *********8 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.5   1.1e-05     0.065       5      18 .]       7      20 ..       1      20 [. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
      LPAM_1  5 llalgalllLsGCs 18
                ++ l++++lLsGC+
  CTQ26498.1  7 IFQLCMVALLSGCQ 20
                8889*********8 PP

>> DUF1908  Domain of unknown function (DUF1908)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   7.8e-06     0.047      43     151 ..      17     122 ..      12     125 .] 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.8e-06
     DUF1908  43 sgygttpgssnvssqcssqerlhqlpaqptadelellskhfssnesvpseeeagrrspilrprsrsLsspsrspivDneivlmntlykerfpkatq..q 139
                 sg    p +s++s   ssq +l+ql++++     ++l++ ++ ++  ++e  +  r++++  ++r   +   ++   n   l+++l ++  p atq  q
  CTQ26498.1  17 SGCQQKP-ASTLSPAISSQAQLEQLSSVA--AGTRYLKNKCNRSDLPADE--TIYRAAVNVGKARGWGNIDVATLSQNSDRLYQQLLQDSTPEATQcsQ 110
                 6666678.899***************775..5678999999666554444..57778888899999999999999999999*************98668 PP

     DUF1908 140 meerlkefinen 151
                  + +l+ fi++ 
  CTQ26498.1 111 FNRQLAPFIASL 122
                 889999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1023.83
//
Query:       CTQ26499.1  [L=850]
Description: fused glycosyl transferase; transpeptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-54  184.0   0.0    3.1e-54  183.1   0.0    1.4  1  Transgly        Transglycosylase
    3.1e-29  101.2   5.2    3.1e-29  101.2   5.2    1.8  2  PBP1_TM         Transmembrane domain of transglycosylase PBP1
      2e-28   98.2   0.2    3.9e-28   97.3   0.2    1.5  1  UB2H            Bifunctional transglycosylase second domain
    6.7e-27   94.5   0.9    1.7e-26   93.2   0.9    1.7  1  Transpeptidase  Penicillin binding protein transpeptidase dom
    7.2e-07   29.3   0.1    1.6e-06   28.2   0.1    1.5  1  UvrB_inter      UvrB interaction domain
  ------ inclusion threshold ------
      0.088   13.9   7.6       0.46   11.6   6.4    2.7  2  DUF3484         Membrane-attachment and polymerisation-promot


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.1   0.0     1e-57   3.1e-54      10     177 ..     209     380 ..     200     381 .. 0.96

  Alignments for each domain:
  == domain 1  score: 183.1 bits;  conditional E-value: 1e-57
    Transgly  10 eeenrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlflseertlerKlkeavlAlklekklsKdeIL 108
                 + e+r +vk + +p+ l+++++a+EDr+Fyeh+G++l +i rAvl+nl++g++ qG+ST+tqQlvknlfls+er+++rK++ea++Al +++++sKd+IL
  CTQ26499.1 209 NGEQRLFVKRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIVDARYSKDRIL 307
                 5789999******************************************************************************************** PP

    Transgly 109 eaYlNsvylgr....evyGieaAarayFgkdakdLtlaeaalLagllkaPsrynplenpeeakkrrkvvlerm 177
                 e+Y+N+vylg+    e+ G+  A+ +yFg+++++L+l++ alL+g++k  s ynp++np+ a +rr++vl+ +
  CTQ26499.1 308 ELYMNEVYLGQsgdnEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASVYNPWRNPKLALERRNLVLRLL 380
                 **********88999******************************************************9865 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   5.2     1e-32   3.1e-29       1      85 []       1      79 [.       1      79 [. 0.92
   2 ?   -3.2   0.5       3.9   1.2e+04      49      68 ..     814     833 ..     795     837 .. 0.56

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 1e-32
     PBP1_TM  1 msgdDRePiGRkGkkakakparkkasrrrrrdddyddeyddeedDdddddeeeevprk..gkkkkpprkkrrwlwlliklflvlvvl 85
                m+gdDRePiGRkG+++  +p+++k++rrr+r++dydd    e+dD dd+++e++vprk  gk++k pr+kr+wlwll+kl +v++vl
  CTQ26499.1  1 MAGDDREPIGRKGRPS--RPTKQKVTRRRVREEDYDD----EYDD-DDYEDEKPVPRKakGKGGK-PRRKRSWLWLLVKLGIVFAVL 79
                9**************9..99*****************....4444.699********97677777.*******************97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.9
     PBP1_TM  49 ddeeeevprkgkkkkpprkk 68 
                 +  +++ p++ ++++pp+++
  CTQ26499.1 814 QSGQQPPPQQQQQQQPPKQQ 833
                 34444445555555555544 PP

>> UB2H  Bifunctional transglycosylase second domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.2   1.3e-31   3.9e-28       1      85 []     113     197 ..     113     197 .. 0.99

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 1.3e-31
        UB2H   1 LypGaalsaaqleqeLellgYrkvsnvtrpGeyavsgnriellrRgFdfpdgaeparrvrlrfagnrvasiqdldngrdlalvRL 85 
                 L+p++++s++++ ++L++++Yr+vs++trpGey+v++n+ie++rR+Fdfpd++e + r+rl+f+g++++ i+++dn+r+++++RL
  CTQ26499.1 113 LEPDMQISKNEMVRLLNATQYRQVSAMTRPGEYTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLETIENMDNNRQFGFFRL 197
                 89**********************************************************************************8 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.9   5.6e-30   1.7e-26       2     273 ..     473     713 ..     472     742 .. 0.87

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 5.6e-30
                     EEEEEETTT-BEEEEEEESE-TTTHHCCTCGCCSTHHHH--BB-GGGGHHHHHHHHHHT.TSSTTSEEEEETCCEET..TSS.ECTCCCC-SSSS CS
  Transpeptidase   2 aavvldaktgevlamaskpsydpnakvgkneplanravqsqyePGStfKvvtaaaalea.gvikpdetlddsggkiq..ggqsikdweqdnkgse 93 
                     a+vv+d  tgev am++  +    +++g     +nra+q + + GS  K++t ++al + + ++ ++ + d + +i+  +gq++   + d++ s+
      CTQ26499.1 473 AMVVVDRFTGEVRAMVGGAE---PQFAG-----YNRAMQARRSIGSLAKPATYLTALSQpNQYRLNTWIADAPVTIRlsNGQTWSPQNDDRRFSG 559
                     789***************85...34555.....8*******************999965599**********98876226666888888889999 PP

                     EEEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSHHHHHHHHHTTTSBB-HHHHHHHHHHHHTTTEEE--BSE CS
  Transpeptidase  94 gitlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkwlegatisfgiGltvtplqlaqayaaiangGklvkPhlv 188
                     ++ l +al+ S n+ +v+l  +lg   + ++  k+g  +       ++ +    ++ l ga       l++tp+++aqa+++ia+gG++ +++ +
      CTQ26499.1 560 QVMLVDALTRSMNVPTVNLGMALGLPAVVDTWTKLGAPK-------NQLNA--VPSMLLGA-------LNLTPIEVAQAFQTIASGGNRAPLSAL 638
                     99********************************99988.......55555..45566779.......9************************** PP

                     EEEEECTTEEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCG.TCTTS--EEEEEEEEECSSSTTSEEEEEEEEEEEEEES CS
  Transpeptidase 189 kaivdpdgvrkvkpkelnklpisketaekvkeglkgvvsrgsgtata.avegykvagKTGTAevagkkgngkkegakiswfvgyap 273
                      ++ ++dg+   ++ ++ ++++ +++a ++  ++++vv+rg+g+  + + +g ++agKTGT++ + +           +wf+g+  
      CTQ26499.1 639 RSVIAEDGTVLYQSYPQAERAVPAQAAYMTLWTMQQVVQRGTGRQLGaKYPGLHLAGKTGTTNNNVD-----------TWFAGIDG 713
                     ********99999****************************8888889*************998862...........27777764 PP

>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1   5.2e-10   1.6e-06       2      74 ..     112     191 ..     111     202 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 5.2e-10
  UvrB_inter   2 elkvgqkidreellrkLvelqYerndvelkrGtFrvrGdtvei......fpasaeev.airieffgdeiesireidpltg 74 
                 +l+ +++i+++e++r L   qY++ ++ +++G++ v+ + +e       fp s+e +   r++f+gd +e+i+ +d   +
  CTQ26499.1 112 NLEPDMQISKNEMVRLLNATQYRQVSAMTRPGEYTVQANSIEMirrpfdFPDSKEGQvRARLTFDGDHLETIENMDNNRQ 191
                 7999**************************************9999999888864443789**************98876 PP

>> DUF3484  Membrane-attachment and polymerisation-promoting switch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.1   3.3e+03      45      61 ..     418     433 ..     382     436 .. 0.75
   2 ?   11.6   6.4   0.00015      0.46      13      64 ..     796     849 ..     787     849 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.1
     DUF3484  45 eekepkkekltdrvkgl 61 
                   +e    kl+d+vk+l
  CTQ26499.1 418 VRQELQA-KLGDKVKDL 433
                 4445344.99*****97 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00015
     DUF3484  13 etlrrqPvdpqvqenpqvqeqaqeqPvpskeqeekep....kkekltdrvkglFgn 64 
                 e++++q  +  +qe++++  q  +qP p+++q+++ p    k++++   +k++Fg+
  CTQ26499.1 796 EMMQQQQLQ--QQEAKNPFNQSGQQPPPQQQQQQQPPkqqeKSDGVAGWIKDMFGS 849
                 455555566..355555556667777553333333333336888999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1119  (0.0624129); expected 358.6 (0.02)
Passed bias filter:                      772  (0.0430587); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.43
# Mc/sec: 5970.45
//
Query:       CTQ26500.1  [L=735]
Description: ferrichrome outer membrane transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-59  203.0  36.6    1.6e-59  203.0  36.6    1.9  2  TonB_dep_Rec  TonB dependent receptor
    1.7e-22   80.0   0.6    4.4e-22   78.7   0.6    1.8  1  Plug          TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   3.8      0.32   2.9e+03      48     142 ..     118     220 ..      94     265 .. 0.40
   2 !  203.0  36.6   1.8e-63   1.6e-59       2     470 .]     255     734 ..     251     734 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.32
                   CCEECCCEEECECCEEEEEEEEEEE.EEEEEEEEEEEEEEEEEEEEEEEEEE......EEEEEEEE.......CEEEEEEEEEEEEEEEEEEEEE.. CS
  TonB_dep_Rec  48 dnysetdnkrlrlgydydlddnlsw.klslraglnYsstdgdsdynnsglgg......grsynrdn.......dyyglgnvlaaeldlngdlwfG.. 128
                   ++y+ ++ ++++ + + + +    + + +l+ g+nYs      +++ ++l        ++s  ++n       + ++   +++   +++++  +G  
    CTQ26500.1 118 TTYDVVTIRGFTTSTTVNTNQY--LdGMKLQ-GNNYS----EVSMDPYFLERvevmrgPTSVLYGNsnpggivSMVSKRPTTEPLKEVQFK--MGtd 205
                   2233444444444444442111..2233666.77777....66666666666666666333333333344344222223333333333333..3333 PP

                   EEEEEEEEEEE.EEE CS
  TonB_dep_Rec 129 snladgldyrk.lsd 142
                   + +++g+d+++  +d
    CTQ26500.1 206 NLWQTGFDFSDaIDD 220
                   333333555532222 PP

  == domain 2  score: 203.0 bits;  conditional E-value: 1.8e-63
                   CCCTSSTTSXEEEEEEEEEEEEEETTTTEEEEEEE.............EEEEEEEEEECCCEECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEE CS
  TonB_dep_Rec   2 wqrsggalsddnllanngdylrytdggdlgsalsr.............gylgtnplyygdnysetdnkrlrlgydydlddnlswklslraglnYsst 85 
                   w+     ++d+++ +  ++++++ d+g++g+ ++               +l+t+    g ++++ ++++ ++gy +++++++++  ++r++l+Y+++
    CTQ26500.1 255 WR-----PDDKTDFTFLSNFQNDPDAGYYGWLPREgtvvpyydangkaHKLPTDF-NEGESDNKISRRQKMVGYSFSHQFDDTF--TVRQNLRYADV 343
                   55.....777888888888888888888888777788885555554442222222.333335555577777777777777777*..*********66 PP

                   EEEEEEEEEEEEE.....EEEEEEEE...CEEEEEEEEEEEEEE...EEEEEEEEEEEEEEEEEEEEEEECCBEESCCTC................C CS
  TonB_dep_Rec  86 dgdsdynnsglgg.....grsynrdn...dyyglgnvlaaeldl...ngdlwfGsnladgldyrklsddgydaydplnps................g 155
                   ++ +++ +++        +r y+r++   + ++++++l+ ++ +   +++l++G      +dy+++++d    y++++p+                +
    CTQ26500.1 344 HTLYRSVYGNGYVapgymNRAYVRSDehlNTFTVDTQLQSDFATgavSHTLLTG------VDYSRMRNDVDADYGTADPIsmsnpqygnpniqvtfP 434
                   666666666333334666666666665554444444444444445556665566......9999866634444444444444444444466667644 PP

                   SEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEETTCSSSS....EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEECCCC CS
  TonB_dep_Rec 156 dasdsvdrdsyglyaqdnikltdrltltlGlRydhysvfgkdlrag.afsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggsngag 251
                   +a  + + +++glyaqd++ + d++  tlG+Ryd+ ++++ ++ ++  + +++ +fs++ g++y + +++s ++sys++f  P  g ++        
    CTQ26500.1 435 YAVLN-RMEQTGLYAQDQMEW-DKWVMTLGGRYDYATTSTLTRATNsLAENHDQQFSWRGGINYLFDNGISPYFSYSESFE-PVSGSNSR------- 521
                   44444.6666699********.*****************88888889778888****************************.98888888....... PP

                   CEEEECSTT---EEEEEEEEEEEEEE..TTEE..EEEEEEEEEEEEEEEEESSSSCSTTTCSEEEEEE..EEEEEEEEEEEEEEEEETTEEEEEEEE CS
  TonB_dep_Rec 252 galsngnpdLkPEtsknyelGlkldd..drln..ltlayFridiknfittdpdgpslgglgdfqyqNv..gkarikGvElelsyrltpgWglglsgg 342
                        g p ++P ++k+ye+G+k+ +        +t+a+++ + +  +t+dp+         +q + +  g+ r++G+Ele+++ ++++  ++++++
    CTQ26500.1 522 -----GQP-FDPSRGKQYEAGVKYVPkdM--PvvVTAAVYQLTKDKNLTADPA---------NQAFSIqtGEIRSRGLELEAKAAVNAN--INVTAA 599
                   .....433.**************877443..334*******************.........55555556**********999885555..666888 PP

                   EEEEEEECECEEECTTTTSSTTEESEEEEEEEEEEC...SEEEEEEEESEEEEEEECCSSEEEEECECCEE.....EE--EEEEEEEEEEEES.... CS
  TonB_dep_Rec 343 gytYydagddsdaddggnplpnvPkhtanlgltYkf...paggWgaglllagarYvavggrrygdaantfr.....rvpgYtlldlslgYklp.... 427
                    y+Y+da+++ d+ ++g++ + vP+++a+l+++Y+f    ++g++    +agarY+++  ++y+++++t        v+gY+l+d+++ Y+l     
    CTQ26500.1 600 -YSYTDAEYTHDTVFNGKRPAEVPRNMASLWADYTFhetALSGLTI---GAGARYIGSTVSYYKNDTSTGKkndafSVAGYALMDATVKYDLArfgl 692
                   .********************************9444567777773...4699**866766777777444455777**************9987666 PP

                   SSEEEEEEEESTTETCSCEEESTTTTTCCEB--SEEEEEEEEE CS
  TonB_dep_Rec 428 knltlslgvnNLfdkryyassgyyglggypgpgRtfrlglryk 470
                   ++ ++ ++vnNLfd++y +s+++  +++y+g+gR++ ++++++
    CTQ26500.1 693 PGSSVGVNVNNLFDREYVSSCYSE-YACYWGAGRQVVATATFR 734
                   555***********99********.**************9986 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.6   4.9e-26   4.4e-22       3     108 .]      78     182 ..      76     182 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 4.9e-26
                 GCCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-G...GCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHC CS
        Plug   3 kdtpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgs...nrvlvlvDGvpianggsgagdlssidpedierievlkGpasa 98 
                 ++tp+svsvvt++++e+++ t++++al+++p+v + ++g++ + + ++iRG+++    +++ ++DG+ ++   +++ +  s+dp  +er+ev++Gp s+
  CTQ26500.1  78 EKTPQSVSVVTRQEMEMRQPTTVKEALSYTPSVFS-TRGSSTTYDVVTIRGFTTsttVNTNQYLDGMKLQ---GNNYSEVSMDPYFLERVEVMRGPTSV 172
                 789*******************************7.99999999********888899999*******95...5555556889**************** PP

                 TTSSTGSSEE CS
        Plug  99 lyGsdaigGv 108
                 lyG++++gG+
  CTQ26500.1 173 LYGNSNPGGI 182
                 ********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 4789.11
//
Query:       CTQ26501.1  [L=265]
Description: iron-hydroxamate transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-32  111.9   0.0    4.1e-32  111.5   0.0    1.1  1  ABC_tran     ABC transporter
    1.1e-07   31.5   0.0     0.0026   17.2   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
    8.4e-07   29.1   0.2     0.0011   18.8   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
     0.0011   18.7   0.4      0.002   17.8   0.4    1.4  1  AAA_29       P-loop containing region of AAA domain
     0.0044   17.6   0.3     0.0061   17.1   0.3    1.2  1  AAA_23       AAA domain
      0.005   16.6   0.1     0.0072   16.1   0.1    1.1  1  AAA_15       AAA ATPase domain
     0.0051   15.7   0.3        1.9    7.2   0.0    2.1  2  ABC_ATPase   Predicted ATPase of the ABC class
  ------ inclusion threshold ------
      0.023   15.0   0.5       0.16   12.2   0.0    2.0  2  AAA_22       AAA domain
      0.031   14.7   0.5      0.058   13.8   0.5    1.6  1  AAA_16       AAA ATPase domain
      0.038   13.9   0.0      0.062   13.2   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
      0.057   13.6   0.1       0.13   12.4   0.1    1.6  1  AAA_33       AAA domain
       0.12   12.2   0.0        4.3    7.0   0.0    2.1  2  ATP_bind_1   Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.0   2.8e-35   4.1e-32       1     137 []      27     176 ..      27     176 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 2.8e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esd 82 
                 l+ +sl++  g++++++G+nG+GKStLlk+l ++  p +Ge+lldg++l++   + + +++++lpq+    +++tvre                  +++
  CTQ26501.1  27 LHPLSLTFPTGKVTGLIGHNGSGKSTLLKMLGRHQPPSAGEVLLDGQPLESWGSKAFARKVAYLPQQLPPAEGMTVRELvaigrypwhgalgrfgaADR 125
                 6789*******************************************************************************************9999 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 e++e+a++ +glk l+++ v     sLSgG++qr  +a++++++++ lllDEpt+
  CTQ26501.1 126 EKVEEAIALVGLKPLAHRLV----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTS 176
                 99******************....*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   5.2e-05     0.077      24      42 ..      37      55 ..      28      58 .. 0.83
   2 !   17.2   0.0   1.7e-06    0.0026     136     203 ..     147     210 ..      78     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.2e-05
                SSEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlld 42
                 ++t ++G+NGSGKs ll 
  CTQ26501.1 37 GKVTGLIGHNGSGKSTLLK 55
                46899**********9975 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.7e-06
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemle 203
                 +LSgGe++ + +a+l+A      ++  llDe  +aLD ++   v  l+++ s++  + vi++ +++  
  CTQ26501.1 147 SLSGGERQRAWIAMLVAQD---SRC-LLLDEPTSALDIAHQVDVLALVHRLSQQRGLTVIAVLHDINM 210
                 8**************8843...455.589***********************9988888887666544 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.5e-07    0.0011       1      21 [.      39      59 ..      39      79 .. 0.85
   2 !    8.5   0.1    0.0011       1.6     235     276 ..     146     184 ..     136     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.5e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldl 21
                +++liG NgsGKS+LL+ l  
  CTQ26501.1 39 VTGLIGHNGSGKSTLLKMLGR 59
                699**************9854 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0011
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllr 276
                 ++lS G ++  a +++l ++++  + ll+DEp + L+ + + 
  CTQ26501.1 146 DSLSGGERQR-AWIAMLVAQDS--RCLLLDEPTSALDIAHQV 184
                 5789******.*******9998..9***********984443 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.4   1.4e-06     0.002      19      39 ..      34      54 ..      25      57 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.4e-06
      AAA_29 19 idlkg.atlltGpsGsGKSTll 39
                + + g +t l+G++GsGKSTll
  CTQ26501.1 34 FPT-GkVTGLIGHNGSGKSTLL 54
                543.44999************8 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3   4.1e-06    0.0061      15      37 ..      32      55 ..      24      58 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.1e-06
      AAA_23 15 idF.skgltlItGpNGaGKTTild 37
                + F   ++t ++G+NG+GK+T+l 
  CTQ26501.1 32 LTFpTGKVTGLIGHNGSGKSTLLK 55
                56666789**************97 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   4.8e-06    0.0072      25      43 ..      39      57 ..      31      60 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.8e-06
      AAA_15 25 ltvliGkNnsGKSsileal 43
                +t liG+N+sGKS++l++l
  CTQ26501.1 39 VTGLIGHNGSGKSTLLKML 57
                899**************98 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.2    0.0019       2.9     241     264 ..      33      57 ..      13      60 .. 0.80
   2 !    7.2   0.0    0.0012       1.9     324     356 ..     149     181 ..     142     206 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0019
                 EE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAl 264
                   p+G vt ++G +  GKsTLL+ l
  CTQ26501.1  33 TFPTGkVTGLIGHNGSGKSTLLKML 57 
                 568888****************977 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0012
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlm 356
                 SG   q a+i+  +  +++ lL+DE tsA  + 
  CTQ26501.1 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIA 181
                 99999************************8765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011      0.16       7      29 ..      39      61 ..      36     106 .. 0.81
   2 ?    0.9   0.1      0.35   5.3e+02      82     126 ..     157     202 ..     124     209 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
      AAA_22  7 ilvvtGesGtGKTtllrrlleql 29
                ++ ++G+ G+GK+tll++l +  
  CTQ26501.1 39 VTGLIGHNGSGKSTLLKMLGRHQ 61
                56689*************99876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.35
      AAA_22  82 leqalraravielliiDEaqh.lr...seealeeLrsllnlsrkgvqli 126
                     l a++  ++l++DE    l+   + ++l  +++l+   + g+++i
  CTQ26501.1 157 WIAMLVAQDS-RCLLLDEPTSaLDiahQVDVLALVHRLSQ--QRGLTVI 202
                 5556677777.89999999888878755888888888888..8888877 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.5   3.9e-05     0.058      25      87 ..      38      92 ..      24     202 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.9e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqlld 87
                 ++ l+G+ G+GKs+l+++l r+   + g + l g+  ++        + + +++ + ++ l +
  CTQ26501.1 38 KVTGLIGHNGSGKSTLLKMLGRHQPPSAGEVlLDGQPLES--------WGSKAFA-RKVAYLPQ 92
                566799**************99877774444466666555........4444433.33333433 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.2e-05     0.062      98     124 ..      36      62 ..      17      71 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.2e-05
                  TTSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpele 124
                  ++k++ l+G+ G GKStL+++l  ++ 
   CTQ26501.1  36 TGKVTGLIGHNGSGKSTLLKMLGRHQP 62 
                  469999**************9977665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   8.7e-05      0.13       4      24 ..      42      62 ..      39      87 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.7e-05
      AAA_33  4 lvGlpGsGKstlaerllkklg 24
                l+G++GsGKstl++ l ++++
  CTQ26501.1 42 LIGHNGSGKSTLLKMLGRHQP 62
                79***********99877666 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0029       4.3       2      21 ..      43      62 ..      42      70 .. 0.86
   2 ?    3.2   0.0     0.044        65      92     143 ..     167     219 ..     144     232 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0029
  ATP_bind_1  2 vGpaGsGKttfvgalseile 21
                +G+ GsGK+t+ + l  + +
  CTQ26501.1 43 IGHNGSGKSTLLKMLGRHQP 62
                89**********99988865 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.044
  ATP_bind_1  92 dyllfDtPGQielfthseslakiveeLes.efalvvvyLvDsqrltdptkfis 143
                   ll+D P       h  +   +v++L++ ++ +v+ +L D ++++   +++ 
  CTQ26501.1 167 RCLLLDEPTSALDIAHQVDVLALVHRLSQqRGLTVIAVLHDINMAARYCDYLV 219
                 5555666655444455555556*******9************99999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1901.57
//
Query:       CTQ26502.1  [L=296]
Description: iron-hydroxamate transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-28  100.1   0.0    1.7e-28   99.8   0.0    1.0  1  Peripla_BP_2  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.0   9.3e-33   1.7e-28       1     234 [.      38     269 ..      38     272 .. 0.94

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 9.3e-33
                   EEE-SHHHHHHHHHTT-GGGEEEB-GGG--GGGGGGT..TS-BSBESSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS-EEE----TTS... CS
  Peripla_BP_2   1 iaslspsvteillalGatdkvvgvdtttsdpldadkleeaivevgadgeidvEklaalkPDlvilskglgltdedeellksgiptvivessntg... 94 
                   +++l++ ++e+llalG+t+  v+++   + +  +++l+ ++++vg ++e+++E l ++kP  ++ s+g+       e+l+ ++p   +++s      
    CTQ26502.1  38 VVALEWLPAELLLALGVTPYGVADIPNYRLWVNEPALPDSVIDVGLRTEPNLELLTQMKPSFIVWSAGY---GPSPEKLARIAPGRGFTFSDGKrpl 131
                   89************************************9******************************...8888888888887777777644666 PP

                   HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT.-EEEEEEEETTE..EEEE-TTSTTTHHHHTS--EESTTT--.STT-EEE-HHHHH CS
  Peripla_BP_2  95 eslkeqiralgellgledeaeklvaeidsklaaaksaidsekpkpvlvfggadeggyvvagsnsyigdlldalgieniaaesk.kseyeeisaEqil 190
                   +  ++++ + + llg++++a+ + ae+d  +++++ + +  +++p+l+ +  d+++++v+g+n+ ++++ld  gi+n+   ++  +++ +++ ++++
    CTQ26502.1 132 AMAQRSLLEMADLLGKTQQAKRHLAEFDALMESLRPRFAGRGDRPLLMISLLDPRHVLVFGENCLFQEVLDRFGIKNAWHGEAaFWGSVSVGIDRLA 228
                   9*****************************************************************************666666************* PP

                   H.H--SEEEEEEHHHHT-S--HHHHT-SHHHHTSHHHHTT-EEEE CS
  Peripla_BP_2 191 a.sdpdvifvsgraeadnktgleflkenpllaelpAvkngrVyal 234
                   a  ++dvi ++      n  + ++l+++pl++++p v+ gr+ ++
    CTQ26502.1 229 AfNEADVICFDHG----NERDMAQLLATPLWQAMPFVRAGRFQRV 269
                   **********999....***********************98666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2210.67
//
Query:       CTQ26503.1  [L=660]
Description: fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.4e-140  466.5  77.3    2.5e-74  250.1  32.9    2.1  2  FecCD     FecCD transport family
  ------ inclusion threshold ------
        6.7    6.7   7.1         15    5.6   0.4    3.6  3  DUF4574   Ubiquinol-cytochrome-c reductase complex assembly f


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.4  36.4   7.5e-70   6.7e-66       2     310 ..      17     323 ..      16     325 .. 0.98
   2 !  250.1  32.9   2.7e-78   2.5e-74       9     312 .]     358     657 ..     350     657 .. 0.91

  Alignments for each domain:
  == domain 1  score: 222.4 bits;  conditional E-value: 7.5e-70
       FecCD   2 lllllllslllgavkispsevfeallgka.dsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgsls 99 
                 l ++++ls++  +v +++++  +al + + d++++++++   lpr+++allvGa+L++ G+l+Q+v+rNpLa+P++lG+ +ga lg+++++l+    ++
  CTQ26503.1  17 LGVAFALSIVNLNVALPYAQWRQALWQPDvDDIAQMLFHYSLLPRLAVALLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTTLW--AIPG 113
                 6789999*******************9999999999********************************************************9..79** PP

       FecCD 100 lfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllar 198
                 + a  +aa++ga+l+ +lv+ ++ ++k+ sp++liLaG++vs+ ++al++l++++ + ++l+s+  w +G+l + +ws +  l++ ll +++l+lll r
  CTQ26503.1 114 VLASQFAALAGACLVGALVFGVS-WGKRLSPVTLILAGLVVSLYCGALNQLMVIF-HHDQLQSMFLWSTGTLTQTDWSVAQRLWPQLLGGAILTLLLLR 210
                 ***********************.*****************************99.99***************************************** PP

       FecCD 199 kldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarllls.ptelpvgi 296
                 +l+l+ l+d +A++lG+     rl +l l+++++a+ v +vG+igF+GL +P +a++l  ++    l+l+al+Galll l+d ++ +l +   e+++g 
  CTQ26503.1 211 PLTLMGLDDGVARNLGLALSLARLGALTLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLARLLLAALIGALLLWLSDQVILWLSRvWREVSTGS 309
                 ********************************************************9999****************************999999***** PP

       FecCD 297 vtaliGapffiyll 310
                 vtaliGap++++ll
  CTQ26503.1 310 VTALIGAPLLLWLL 323
                 *************8 PP

  == domain 2  score: 250.1 bits;  conditional E-value: 2.7e-78
       FecCD   9 slllgavkispsevfeallgkadsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgslslfalplaa 107
                  ll+ +v + + +  + +l    +l  e +l +r+prvl al++G++LavaG+++Q++t Np+a+P++lGissgaa+g+vl+l+++ ++  + +l+ a 
  CTQ26503.1 358 LLLAVSVALAFGRDAHGWLWAHGDLL-EQLLPWRWPRVLSALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFFV-PGDAFGWLLPAG 454
                 44444555555555554443333333.34799****************************************************98.888888888999 PP

       FecCD 108 flgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllarkldllalg 206
                  lga+++ll+++l a +r+g+sp++++LaG+a+s+ ++ l ++l++   + ++++il+w++Gs+++a+ ++v+ + +++l+ll+l+ l++r+l++l lg
  CTQ26503.1 455 SLGAAATLLIIMLAA-GRGGFSPHRMLLAGMALSTAFTMLLMMLQAS-GDPRMAQILTWISGSTYSATPERVVRSGAVMLALLALAPLCRRWLTILPLG 551
                 999999999999888.*****************************99.889************************************************ PP

       FecCD 207 detAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgivtaliGapf 305
                  e A+++G+  +  r++llll+a+lta+a+  +Gp++FvGL++Phiar++  +++  ++++s+l+G+lll++ad+ +r++++p+++p+g++ ++iGap+
  CTQ26503.1 552 GEAARAVGMALTSSRIVLLLLAACLTAAATLTIGPLSFVGLMAPHIARMMGFRRTLPHMVISGLTGGLLLVFADWCGRMMMFPYQIPAGLLSTFIGAPY 650
                 ************************************************7777*********************************************** PP

       FecCD 306 fiylllr 312
                 fiyll++
  CTQ26503.1 651 FIYLLRK 657
                 *****97 PP

>> DUF4574  Ubiquinol-cytochrome-c reductase complex assembly factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3      0.07   6.2e+02       8      25 ..      62      79 ..      57      91 .. 0.73
   2 ?    5.6   0.4    0.0017        15       9      32 ..     422     445 ..     414     447 .. 0.81
   3 ?    2.0   0.1     0.021   1.9e+02      15      64 ..     485     535 ..     475     539 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.07
     DUF4574  8 lsvvallgaGaGlGsaLf 25
                l+v +l+gaG Gl  +Lf
  CTQ26503.1 62 LAVALLVGAGLGLVGVLF 79
                456778899999888887 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0017
     DUF4574   9 svvallgaGaGlGsaLfvLvtPge 32 
                   v+ +++Ga +G++L++++ Pg+
  CTQ26503.1 422 PEVLGISSGAAFGVVLMLFFVPGD 445
                 55667889**************96 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.021
     DUF4574  15 gaGaGlGsaLfvLvtPgeerkqeilkempeqdpqrrde.aakkkaLvlatL 64 
                 +  + +++ L++L + g+ r+ +il  +++++     e ++++ a++la L
  CTQ26503.1 485 ALSTAFTMLLMMLQASGDPRMAQILTWISGSTYSATPErVVRSGAVMLALL 535
                 334568999*****************9999876655441567777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 4790.73
//
Query:       CTQ26504.1  [L=426]
Description: glutamate-1-semialdehyde aminotransferase (aminomutase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-80  269.4   0.0    5.3e-80  269.0   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
    0.00056   19.2   0.0    0.00094   18.4   0.0    1.3  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.0   0.0   5.9e-84   5.3e-80       9     377 ..      32     396 ..      26     419 .. 0.94

  Alignments for each domain:
  == domain 1  score: 269.0 bits;  conditional E-value: 5.9e-84
                  SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHH CS
  Aminotran_3   9 lllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKl 106
                  ++l+i++a+G+yl+dvdgk y+D v+s+ ++ lGh+hP++ +av e+a     +sfga t+ + +k+a  +++l+p  +d+v ++nsG+eA+++A++l
   CTQ26504.1  32 TPLFIERADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIHNAVIEAASRG--LSFGAPTEME-VKMAALVTELVPT-MDMVRMVNSGTEATMSAIRL 125
                  469*********************************************999..9999987665.7899999******.******************** PP

                  HHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETT CS
  Aminotran_3 107 arkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqge 204
                  ar        t + kii+f+g++HG+    l  +gs  +  tl +p++p+v+   ++ + ++ +n+      l  ++a  ++  +e+a +ivEp+ g+
   CTQ26504.1 126 ARG------FTGRDKIIKFEGCYHGHADCLLVKAGS--GALTLGQPNSPGVPADFAKHTLTCTYND------LASVRAAFEQYPQEIACIIVEPVAGN 209
                  ***......***************************..999999*******999999999999999......556777779999************** PP

                  TTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTT..TTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTS...B--TTTT-HHH CS
  Aminotran_3 205 gGvvvaspeflaklrelckkhdvllivDEvqtGf..GrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgs...hgsTfgGnpla 297
                  +  ++++pefl +lr+lc++ ++lli+DEv+tGf  +  G   A +++gv+pDl++l+K ++gG+p+ a+ +++evm+alap +   +++T +Gnp+a
   CTQ26504.1 210 MNCIPPQPEFLPGLRALCDEFGALLIIDEVMTGFrvALAG---AQAYYGVEPDLTCLGKIIGGGMPVGAFGGRREVMDALAPTGpvyQAGTLSGNPIA 304
                  **********************************888899...99999**********************************99999*********** PP

                  HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC............HHHHHHHHHCTEE-EEE CS
  Aminotran_3 298 cavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke............keilkkakekGvlilsa 377
                  +a+  a l+ +++  + e   el ++l +gL +++ +      v ++G m++i ++++++v+             k++++ ++e+Gv++ ++
   CTQ26504.1 305 MAAGFACLNEVAQPGVHETLTELTNQLAQGLLDAARDAGIPLVVNNVGGMFGIFFTDAETVTCyqdvvkcdverfKRFFHLMLEEGVYLAPS 396
                  ***********************************9999999999********7777777666999*********99**********98765 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     1e-07   0.00094     129     361 ..     181     417 ..     163     418 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1e-07
                    EE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTS CS
  Aminotran_1_2 129 hldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafG 224
                     +dl ++ +a ++ p++ +  ++i+   + N+    + +e l  l +l+++ ++ll++De+  gf     +a+a + +ve++        l+K  G
     CTQ26504.1 181 YNDLASVRAAFEQYPQEIA--CIIVEPVAGNMNCIPPQPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQA-YYGVEPDLT-----CLGKIIG 268
                    5788888888888665555..777777889*************************************9557666.999998754.....799**97 PP

                    SGGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHSTEEEECCS.CSSEEEEEETHH CS
  Aminotran_1_2 225 laGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaalsdallkqs...eleemrqrlqkrrkelrdeLaelglkvlasq.sgmflltdlsae 315
                      G  vG++ g  +v ++l+     +   + ++ ++++aa  + l +      +e+  +  +++++ l d+ +++g++ + ++ +gmf +  ++ae
     CTQ26504.1 269 -GGMPVGAFGGRREVMDALAPTGPVYQAgTLSGNPIAMAAGFACLNEVAqpgVHETLTELTNQLAQGLLDAARDAGIPLVVNNvGGMFGIFFTDAE 363
                    .36677***************999998887777777766644433333235566777777778888899988888********************* PP

                    ..............CHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHH CS
  Aminotran_1_2 316 ..............takelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelve 361
                                  + k ++  +lee gvy+ p + f+    + ++v +++ee++++ ++
     CTQ26504.1 364 tvtcyqdvvkcdveRFKRFFHLMLEE-GVYLAP-SAFE---AGFMSV-AHSEEDIDNTID 417
                    77777777776666666666669999.******.6666...566888.889998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3172.49
//
Query:       CTQ26505.1  [L=503]
Description: chloride channel, voltage-gated [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.5e-94  314.5  38.5    1.3e-90  304.3  32.3    2.2  2  Voltage_CLC  Voltage gated chloride channel


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.2   1.2e-07    0.0021     158     220 ..      61     127 ..      20     128 .. 0.74
   2 !  304.3  32.3     7e-95   1.3e-90       2     353 ..     120     468 ..     119     469 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.2e-07
                  .--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHCHH.CHHHH.HHH.HHHHHHHHHHHHCCCS CS
  Voltage_CLC 158 alsllelilfvllGilgGllgalfvrlllkver.lfrkle.klkik.krl.epalvgllvgllglll 220
                  + +l  l++++++G l+Gl+g++f +++ +v++ ++  l   ++ +  ++ +++++++l++++g++l
   CTQ26505.1  61 KTPLAVLFMAAVVGTLAGLVGVAFEKSVNWVQNqRIGALAqVADHWyLVWpLAFILSALLAMVGYFL 127
                  67889999************************63445555455555655568899999999999986 PP

  == domain 2  score: 304.3 bits;  conditional E-value: 7e-95
                  HHHHHHHCCCCC-GGGSC-SHHHHHHHCTTSS---HHHHHHHHHHHHHHHHCTT-S-BTHHHHHHHHHHHHHHHHHHTT.--SHHHHHHHHHHHHHHH CS
  Voltage_CLC   2 ggllagllvklvapeaagsGipevkaalngvkgplslrvllvkflasvltvgsGlslGreGplvqiGAavgsglsrllklsrndrdrrlvaaGaAAGi 99 
                  ++++  +lv+++apea gsGipe+++al++ +   ++rvl+vkf++++ t+g+G+ lGreGp+vq+G+ +g ++ +++++++ +++++l+a+GaA+G+
   CTQ26505.1 120 LAMVGYFLVRRFAPEAGGSGIPEIEGALEELRPVRWWRVLPVKFVGGMGTLGAGMVLGREGPMVQLGGNIGRMVLDVFRMRSPEARHTLLATGAASGL 217
                  57788899************************99*********************************************999997777********** PP

                  HHHHT-HHHHHHHHCTTTSTSS--..TTHHHHHHHHHHHHHHHHHHCTTS-S-.T---...--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH CS
  Voltage_CLC 100 AAaFnaPlgGvlfalEevsrefsl..rallpvfvasvvaalvlrlllgeepafgeveslfalsllelilfvllGilgGllgalfvrlllkverlfrkl 195
                  +AaFnaPl+G+lf++Ee++ +f++   ++ +vf+ ++++++v+r+++ge ++++ v +l++ +++ l+l+++lG+l+G++g lf++l+l+++ lf+++
   CTQ26505.1 218 SAAFNAPLAGILFIIEEMRPQFRYnlISIKAVFTGVIMSSIVFRIFNGEAAIIE-VGKLSNAPVNTLWLYLVLGMLFGCFGPLFNFLVLRTQDLFQRI 314
                  **********************996567889*******************9998.888889************************************* PP

                  H.CHHHHHHH.HHHHHHHHHHHHCCCSCC.CSSSSCCHHHHHCTT-S-HHHHHH...HHHHHHHHHHHHHCTT-CSBSHHHHHHHHHHHHHHHHHHHH CS
  Voltage_CLC 196 e.klkikkrl.epalvgllvgllglllpasvlgggyeliasllegstlllsllllllllllkllataltlgsgvpgGifaPsLviGAalGrlvglvla 291
                  +    ikk++    l+g l gllgl+ p+ ++ggg +li  +++g+   +s+ lll+++++++++t+++++sg+pgGifaP+L++G++lG ++g+++ 
   CTQ26505.1 315 HgG-NIKKWVfIGGLIGGLCGLLGLMQPS-AVGGGFNLIPIAAAGN---FSVGLLLFIFIARVVTTLICFSSGAPGGIFAPMLALGTLLGTAFGMAAI 407
                  954.4555554888888888999999887.9**************9...*********************************************9999 PP

                  HH-CTSSC....HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC--GCCHHHHHHHHHHHHHHHC CS
  Voltage_CLC 292 lllpgaass.dpgafalvGmaaflagvtrapltaiviviEltgdlelllplmlavliAkavad 353
                   l+p  a + d g+fa++Gm+a+la+ +raplt iv+v+E+t++++l+lp+++++l A+++a+
   CTQ26505.1 408 PLFP--AYHlDAGTFAIAGMGALLAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQ 468
                  9988..455599**********************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3550.18
//
Query:       CTQ26506.1  [L=114]
Description: putative chaperone involved in Fe-S cluster assembly and activation; hesB-like [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-20   73.5   0.0    1.5e-20   73.4   0.0    1.0  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   8.6e-25   1.5e-20       3     110 ..       9     109 ..       7     110 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 8.6e-25
                  EEE-HHHHHHHHHHHHCTTEC...EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEE CS
  Fe-S_biosyn   3 itlteaAaeklkkllaedkke...lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLk 97 
                  +++teaAa+k+k+l+a+++++   lr+++  gg       Cs g++y + + d+  +e d+++e++g+ ++v+++sl++l  g ++d++e+l+++++ 
   CTQ26506.1   9 LEFTEAAANKVKHLIADEDNPnlkLRVYITGGG-------CS-GFQYGFTFDDQV-NEGDMTIEKQGVGLVVDPMSLQYL-VGGSVDYTEGLEGSRFI 96 
                  89***************9999977777777777.......**.************.************************.9**************** PP

                  EETCCEEEEEEEE CS
  Fe-S_biosyn  98 sdngilddnvglg 110
                   +n+++++++g+g
   CTQ26506.1  97 VTNPNAKSTCGCG 109
                  ************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 860.10
//
Query:       CTQ26507.1  [L=207]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-44  148.9  24.2      3e-24   84.7   7.5    2.3  2  UPF0126   UPF0126 domain
  ------ inclusion threshold ------
      0.035   14.3   2.2      0.035   14.3   2.2    3.2  3  AzlD      Branched-chain amino acid transport protein (AzlD)
      0.039   13.5   2.2       0.18   11.3   2.2    2.1  1  TRIC      TRIC channel


Domain annotation for each model (and alignments):
>> UPF0126  UPF0126 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   7.5     5e-28     3e-24       1      76 [.       4      78 ..       4      80 .. 0.97
   2 !   70.1   8.7   1.8e-23   1.1e-19       2      75 ..      92     163 ..      91     166 .. 0.94

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 5e-28
                HHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHTTSSSSGHHHSSTCHHHHHHHHHHHHHHH CS
     UPF0126  1 lildaiGlaafavsGalvAlkkgldllgvvvlGvvTAvgGGvlRDvllgrevPvvllreelyataallgalvvvll 76
                ++ld+iG+a+fa+sG+l A k ++d++gv+vlGvvTAvgGG++RD+ l +  Pv++++++  +++a++++++++ll
  CTQ26507.1  4 YWLDIIGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGTIRDMALAN-GPVFWVKDPTDLVVAMVTSMLTILL 78
                59***********************************************7.8*********************998 PP

  == domain 2  score: 70.1 bits;  conditional E-value: 1.8e-23
                 HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHTTSSSSGHHHSSTCHHHHHHHHHHHHHH CS
     UPF0126   2 ildaiGlaafavsGalvAlkkgldllgvvvlGvvTAvgGGvlRDvllgrevPvvllreelyataallgalvvvl 75 
                 +lda+Gla+f  +G+ +A  +g  +l++v +GvvT+vgGG++RDvl++ e+P++l +e +yata+++g++v   
  CTQ26507.1  92 VLDAVGLAVFVGIGVNKAFLAGSGPLVAVCMGVVTGVGGGIIRDVLAR-EIPMILRTE-IYATACIVGGIVHAT 163
                 79**********************************************.6*****776.**********99765 PP

>> AzlD  Branched-chain amino acid transport protein (AzlD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3      0.13   7.9e+02      34      46 ..       4      16 ..       1      42 [. 0.62
   2 ?   14.3   2.2   5.9e-06     0.035      10      57 ..      66     114 ..      65     138 .. 0.80
   3 ?    1.1   1.0     0.074   4.4e+02      48      77 ..     155     186 ..     117     193 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.13
        AzlD 34 rllryvPiavLaa 46
                ++l+ +++av+a+
  CTQ26507.1  4 YWLDIIGTAVFAI 16
                5666666666654 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 5.9e-06
        AzlD  10 lvtyltRylplllfrr.lklppwlqrllryvPiavLaaliapellaetg 57 
                 +v ++t +l +ll+r+ ++lp+w+  +l++v++av++ + +   +  ++
  CTQ26507.1  66 VVAMVTSMLTILLVRQpRRLPKWILPVLDAVGLAVFVGIGVNKAFLAGS 114
                 67788889999999999*********************99999886543 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.074
        AzlD  48 iapellaetgklsasl..glarllaalvavlv 77 
                 i+  +++ t + +++l   ++ +++++v++++
  CTQ26507.1 155 IVGGIVHATAHDTFHLplENSAMMGMVVTLVI 186
                 44444433333333333377777777777775 PP

>> TRIC  TRIC channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.2     3e-05      0.18      91     184 ..     102     188 ..      23     195 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3e-05
                 HHHHHHHHHHHSTT-HHHHHHHHHHHHHTHHHHHHHHHHHCT----TTTSSSTHHHHHHHHHHHHHHHHHH.CTTT--S-HHHHHHHHHHHHHHH CS
        TRIC  91 ieaGvshaakvypnallvmvlvglvkGaGaellknverlvrgvwkpetnellkpsfttkasllasilftle.ktdllpiskeqlylvvvlflvlf 184
                 +  Gv++a  +   + lv v++g+v G G+++++        v+  e   +l+  + + a++++ i+ +    t +lp+++++++ +vv++++ +
  CTQ26507.1 102 VGIGVNKAF-LAGSGPLVAVCMGVVTGVGGGIIR-------DVLAREIPMILRTEIYATACIVGGIVHATAhDTFHLPLENSAMMGMVVTLVIRL 188
                 555565554.34677899************9875.......6678899999****************9998678899***999999998887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1588.40
//
Query:       CTQ26508.1  [L=266]
Description: vitamin B12 transporter subunit: periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-30  104.4   0.1    8.1e-30  104.1   0.1    1.0  1  Peripla_BP_2  Periplasmic binding protein
  ------ inclusion threshold ------
      0.026   13.4   0.4      0.036   13.0   0.4    1.1  1  DUF2397       Protein of unknown function (DUF2397)
      0.047   14.2   0.1      0.067   13.7   0.1    1.3  1  DUF3391       Domain of unknown function (DUF3391)


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.1   1.4e-33   8.1e-30       1     209 [.      26     223 ..      26     237 .. 0.91

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 1.4e-33
                   EEE-SHHHHHHHHHTT-GGGEEEB-GGG--GGGGGGT..TS-BSBESSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS-EEE----TTSHHH CS
  Peripla_BP_2   1 iaslspsvteillalGatdkvvgvdtttsdpldadkleeaivevgadgeidvEklaalkPDlvilskglgltdedeellksgiptvivessntgesl 97 
                   +++lsp++te+ +a G+t+  vgv+ ++ +p+ a+    +i  v + +  ++E+++alkPD+v++  g+   ++  +l+++gi+++ v++s t+e++
    CTQ26508.1  26 VITLSPANTELAFAAGITP--VGVSSYSDYPSQAK----TIEQVASWQGMNLERIVALKPDVVLAWRGGNAERQVNQLQSLGIHVLWVQTS-TIEEI 115
                   79*****************..*************9....9*****************************88899999**************.67*** PP

                   HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT.-EEEEEEEETTE..EEEE-TTSTTTHHHHTS--EESTTT--STT-EEE-HHHHHHH-- CS
  Peripla_BP_2  98 keqiralgellgledeaeklvaeidsklaaaksaidsekpkpvlvfggadeggyvvagsnsyigdlldalgieniaaeskkseyeeisaEqilasdp 194
                     ++r+l++   ++++a+++++ ++++++a+k++++++ +k   vf +  +++ + +g +s   ++l+  g+eni+a+s    + ++s+Eq+la++p
    CTQ26508.1 116 IATLRELAQWSPQPEKAQQAAQAMQQEYDALKARYANAPKKR--VFLQFGSAPLFTSGPGSIQDQVLRLCGGENIFATS-RVPWPQVSREQVLARQP 209
                   **************************************3333..3444444457*************************.***************** PP

                   SEEEEEEHHHHT-S- CS
  Peripla_BP_2 195 dvifvsgraeadnkt 209
                   ++i+v+g  +++  +
    CTQ26508.1 210 QAIVVTGD-ASRIAE 223
                   *******9.444433 PP

>> DUF2397  Protein of unknown function (DUF2397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   6.1e-06     0.036      94     155 ..      87     145 ..      83     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.1e-06
     DUF2397  94 gveveraveeleealgeggslervlleriaarLraLaelaeedeaddevaellrelferfek 155
                 g  +er+v +l+++  +   ++++  e+i a+Lr+La+++ ++e+++++a+++++   ++++
  CTQ26508.1  87 GGNAERQVNQLQSLGIHVLWVQTSTIEEIIATLRELAQWSPQPEKAQQAAQAMQQ---EYDA 145
                 7789***************************************977655554443...3333 PP

>> DUF3391  Domain of unknown function (DUF3391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.1e-05     0.067      37     106 ..      91     145 ..      88     227 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
     DUF3391  37 eadierLrasgiqeVwidtdksdeeelagldvpaaeaaeeakaaeesaeleeekqerperleaereeler 106
                 e+++++L+++gi+ +w++t+  +e   + ++ ++ +++ ++ka+++ +              a ++e+  
  CTQ26508.1  91 ERQVNQLQSLGIHVLWVQTSTIEEIIATLRELAQWSPQ-PEKAQQAAQ--------------AMQQEYDA 145
                 78*******************55555555533333222.222222222..............22222322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1156  (0.0644765); expected 358.6 (0.02)
Passed bias filter:                      873  (0.0486921); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 1956.74
//
Query:       CTQ26509.1  [L=232]
Description: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-48  164.3   2.8    2.9e-48  164.1   2.8    1.0  1  PNP_UDP_1  Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.1   2.8   1.6e-52   2.9e-48       1     232 [.       2     225 ..       2     227 .. 0.94

  Alignments for each domain:
  == domain 1  score: 164.1 bits;  conditional E-value: 1.6e-52
                 CEEEEESSHHHHHHHHHHEEEEEEEEEE.TTEEEEEEEETTEEEEEEE--SSHHHHHHHHHHHHHHHC--SEEEEEEEEEESSTTT-TT-EEEEEEEEE CS
   PNP_UDP_1   1 kiaiivgspgevellaespleetpfgregrgfkfvtGtlkgkpvvivstGiGkpnaavvaeirllkefgvkaiiriGtaGglnpdlkvGDvvipddain 99 
                 ki+ii+++++ev ll+++  e+ + ++   g +++tG+l+g+ v ++++GiGk+ aa + ++ ll++ ++++ii++G+aGgl + lkvGD+v++d+a +
  CTQ26509.1   2 KIGIIGAMEEEVTLLRDK-IENRQTITI-GGSEIYTGQLHGVDVALLKSGIGKVAAA-MGATLLLERCQPDVIINTGSAGGLASTLKVGDIVVSDEARY 97 
                 69****************.999999999.****************************.***************************************** PP

                 SSSCCGCCTHHCCTCCCCTTSSEE--HHHHHHHHHCHHTTTTTEEEEEEEEESESS-CHHHHHHHHHHTC.-CEEESSHHHHHHHHHHTT--EEEEEEE CS
   PNP_UDP_1 100 fdgrsplygpkeegqyfpdsydapadpelrallkeaaealgikvhrGvvatadgfyaeteaelrllrrlg.adaveMEtaavaqlArelgipfaairvv 197
                 +d + +++g++ + q + +++ ++ad++l+a+++   +al+ + +rG+++++d f + ++  +++ +++  a aveME+ a+a++++ +++pf+++r++
  CTQ26509.1  98 HDADVTAFGYEYG-QLPGCPAGFKADEKLVAAAESCIKALDLNAVRGLIVSGDAFINGSVGLAKIRHNFPqAIAVEMEATAIAHVCHNFKVPFVVVRAI 195
                 **********998.*********************999999******************8888888888877799************************ PP

                 EETTTBETTCTCH.HCCCHHHHHHHHHHHHHHHHH CS
   PNP_UDP_1 198 sdlaaggadaeatheeveefaqeaaknaaalllal 232
                 sd+a++     ++h  +eef++ aa+++   ++ l
  CTQ26509.1 196 SDVADQ-----QSHLSFEEFLAVAARQSTLMVENL 225
                 **5555.....667999999999988877666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1819.18
//
Query:       CTQ26510.1  [L=504]
Description: deoxyguanosine triphosphate triphosphohydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-10   41.0   2.8    4.5e-05   23.9   0.4    3.5  3  HD_assoc  Phosphohydrolase-associated domain
    3.5e-10   40.2   0.0    9.8e-10   38.7   0.0    1.8  1  HD        HD domain


Domain annotation for each model (and alignments):
>> HD_assoc  Phosphohydrolase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.23     2e+03      28      66 ..     281     320 ..     277     330 .. 0.67
   2 !   15.0   0.0     3e-06     0.027       9      47 ..     377     415 ..     371     436 .. 0.85
   3 !   23.9   0.4   5.1e-09   4.5e-05      38      92 .]     439     499 ..     426     499 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.23
    HD_assoc  28 vqreeekarriireLfealledper.llpeefrarleaae 66 
                 v+++   a+++ + L++a+ ++++  l  + +++++e+ +
  CTQ26510.1 281 VEKRIFSAEQLYQHLYDAWGSHEKGsLFSQVVENAWEKSR 320
                 6666678888999999998665443055666666666655 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3e-06
    HD_assoc   9 aeiaeLkkflfenvyrhpevqreeekarriireLfeall 47 
                 + +++ k++++++v++hp+v+++e ++ r+i+ L +++ 
  CTQ26510.1 377 QLLELYKNVAMKHVFSHPDVEQLELQGYRVISGLLDIYQ 415
                 5667789****************************9985 PP

  == domain 3  score: 23.9 bits;  conditional E-value: 5.1e-09
    HD_assoc  38 iireLfealledperllpeefrarleaaedd......araRvVcDyiAgmTDryalrlyar 92 
                 i ++L++ l ++ + ++ e + + +++a +        r R + Dyi+gmTD ya ++y+r
  CTQ26510.1 439 IASRLYQKLSTRHRLAYVEAVNKLARTAPEFalmeyyYRCRLIQDYISGMTDLYAWDEYRR 499
                 5566777777666656666666555555544566667899*******************97 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   1.1e-13   9.8e-10       1      52 [.      66     134 ..      66     164 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.1e-13
                 HHHHHHHHHHHHHHHHHHHHH.................HHHHHHHHHHHHHTTTTHHHHTS..HHHHHH CS
          HD   1 rleHsleVaklarrlaedlge.................eedrellllaaLlHDiGkgpfgdafekkeee 52 
                 rl+HsleV +++r +a+++                     ++ ++++a+L+HDiG++pfg+++e + ++
  CTQ26510.1  66 RLTHSLEVQQVGRYIAKEVLSrlkelrlleeygleeltGPFESVVEMACLMHDIGNPPFGHFGEAAIND 134
                 789****************99******************************************988544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3825.11
//
Query:       CTQ26511.1  [L=477]
Description: serine endoprotease (protease Do), membrane-associated [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-33  114.2   0.7    1.7e-32  113.4   0.7    1.4  1  Trypsin_2      Trypsin-like peptidase domain
    3.7e-29  100.9   8.5    1.1e-15   57.7   0.2    3.1  3  PDZ            PDZ domain
      2e-28   98.6   1.7    1.7e-16   60.3   0.0    2.6  2  PDZ_2          PDZ domain
      3e-22   78.2   6.0    8.6e-11   41.5   0.1    3.3  4  PDZ_6          PDZ domain
    4.4e-20   72.5   0.3    7.5e-20   71.7   0.3    1.3  1  Trypsin        Trypsin
     0.0014   18.6   0.1        2.5    8.2   0.1    2.7  2  PDZ_1          PDZ-like domain
     0.0023   17.8   1.5          2    8.4   0.1    3.3  3  Tricorn_PDZ    Tricorn protease PDZ domain
     0.0035   17.0   0.8       0.27   10.9   0.2    2.3  2  DUF3394        Domain of unknown function (DUF3394)
  ------ inclusion threshold ------
      0.077   12.9   0.0       0.21   11.5   0.0    1.7  1  Complex1_51K   Respiratory-chain NADH dehydrogenase 51 Kd sub
      0.089   13.4   0.4        1.1    9.9   0.0    2.7  3  SAF            SAF domain
       0.12   11.0   1.2       0.31    9.6   0.5    1.8  2  Peptidase_S46  Peptidase S46


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.7     1e-35   1.7e-32       1     150 []     117     253 ..     117     253 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 1e-35
   Trypsin_2   1 GsGflvgsd.glilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggek 98 
                 GsG+++++  g+++Tn+Hvvd+a++  v           +dgr+++akvv++dp++D+Al+++  +++++l +++l++s+al++g+  +++G+p g ++
  CTQ26511.1 117 GSGVIIDAAkGYVVTNNHVVDNATTIKV---------QLSDGRKFDAKVVGKDPRSDIALIQI--QDPKNLTAIKLADSDALRVGDYTVAIGNPFGLGE 204
                 9******99679****************.........**************************..*********************************9 PP

   Trypsin_2  99 sgsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                   +v+sGivs++ + ++ + ++ e+f+qtdaa+++G+SGG+l++ +G+++G+
  CTQ26511.1 205 --TVTSGIVSALGR-SGLNVENYENFIQTDAAINRGNSGGALVNLNGELIGI 253
                 ..9***********.************************************8 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.8   4.5e+03      39      55 ..     182     198 ..     174     207 .. 0.80
   2 !   57.7   0.2   6.8e-19   1.1e-15       8      81 ..     290     370 ..     282     371 .. 0.89
   3 !   45.5   2.3   4.3e-15     7e-12       8      82 .]     394     466 ..     388     466 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.8
                 HHHHTSSTTEEEEEETT CS
         PDZ  39 aeadglkvGDkIlsvNg 55 
                 a+ d l+vGD  +++++
  CTQ26511.1 182 ADSDALRVGDYTVAIGN 198
                 555669****9888876 PP

  == domain 2  score: 57.7 bits;  conditional E-value: 6.8e-19
                 TTSESSEEEEEETTSS.......SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ   8 grgglGfslkggsdqr.......gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                 +rg+lG+ + + +++        +++g+fvs+v+pg+aa+++g+k+GD+I+s Ng+ +++++ ++a+  ++++++kv L +
  CTQ26511.1 290 KRGELGIMGTELNSELakamkvdAQRGAFVSQVMPGSAAAKAGIKAGDVITSLNGKAISSFAALRAQVGTMPIGSKVELGL 370
                 6777888888777777788*****************9999999**********************************9976 PP

  == domain 3  score: 45.5 bits;  conditional E-value: 4.3e-15
                 TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEEE CS
         PDZ   8 grgglGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLtil 82 
                 ++ + G++++++s++++dkg++v++v +g +a++ glk+GD+I++ N+++v+n+++++++   k+s  +++L+i+
  CTQ26511.1 394 STIFNGIEGAEMSNKGQDKGVVVNNVKAGTPAAQIGLKKGDVIVGANQQPVKNIADLRKIFDAKPS--VLALNIQ 466
                 66788************************5555555**********************99999999..8999886 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   1.1e-19   1.7e-16       3      82 .]     294     383 ..     292     383 .. 0.90
   2 !   36.6   0.4   2.5e-12   4.1e-09       4      54 ..     402     452 ..     400     471 .. 0.90

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 1.1e-19
                 ..XX------............-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEEE- CS
       PDZ_2   3 lGvsvsdeed..........tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvevkl 82 
                 lG++ +++++          ++g+ v +V +g+ aakag+kagDvi++++gk+++s + l+ ++ ++ +G++V+l +lRdgk  tv+v+l
  CTQ26511.1 294 LGIMGTELNSelakamkvdaQRGAFVSQVMPGSAAAKAGIKAGDVITSLNGKAISSFAALRAQVGTMPIGSKVELGLLRDGKPVTVTVEL 383
                 6666666666666777777799******************************************************************97 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 2.5e-12
                 .XX------..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHH CS
       PDZ_2   4 GvsvsdeedtggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlis 54 
                 G+++s++ +++gv+v +Vk g+Paa+ glk+gDvi+ ++ ++vk+ +dl++
  CTQ26511.1 402 GAEMSNKGQDKGVVVNNVKAGTPAAQIGLKKGDVIVGANQQPVKNIADLRK 452
                 88999999999************************************9985 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.7   4.4e+03      16      26 ..     187     197 ..     182     198 .. 0.77
   2 !   41.5   0.1   5.3e-14   8.6e-11       1      40 [.     318     355 ..     318     372 .. 0.91
   3 ?   -1.9   0.0       1.9   3.2e+03      29      54 ..     361     381 ..     355     383 .. 0.65
   4 !   38.4   0.4   5.1e-13   8.4e-10       1      56 []     415     467 ..     415     467 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.7
       PDZ_6  16 lrvGDiilsvN 26 
                 lrvGD+ ++++
  CTQ26511.1 187 LRVGDYTVAIG 197
                 9****977776 PP

  == domain 2  score: 41.5 bits;  conditional E-value: 5.3e-14
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaa 40 
                 +V++V pgs A++AG+++GD+i+s+NG+ +   s a ++a
  CTQ26511.1 318 FVSQVMPGSAAAKAGIKAGDVITSLNGKAI--SSFAALRA 355
                 79****************************..99888765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.9
       PDZ_6  29 pveglsladvaallrgsagesvvlvv 54 
                 p+  +s ++   llr   g++v+++v
  CTQ26511.1 361 PI--GSKVE-LGLLR--DGKPVTVTV 381
                 55..55555.45565..789999998 PP

  == domain 4  score: 38.4 bits;  conditional E-value: 5.1e-13
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvvlvvrr 56 
                 vV  V++g+PA++ Gl+ GD+i+  N qpv  +++ad++ +   + ++ + l ++r
  CTQ26511.1 415 VVNNVKAGTPAAQIGLKKGDVIVGANQQPV--KNIADLRKIFD-AKPSVLALNIQR 467
                 6999**************************..**********9.888888888887 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.3   4.6e-23   7.5e-20      17     219 ..     113     278 ..      98     280 .. 0.81

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 4.6e-23
                 EEEETTCEEEEEEEEEETT..EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTT CS
     Trypsin  17 slsvksgkhlCgGslisen..wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaas 113
                 ++ ++s      G++i++   +v+T++H+v+na+ +kv       + s+g  +k++ + v    + +p+    Dial++++ p    ++   i+l++ s
  CTQ26511.1 113 FMALGS------GVIIDAAkgYVVTNNHVVDNATTIKV-------QLSDG--RKFDAKVV----GKDPRS---DIALIQIQDP----KNLTAIKLAD-S 184
                 445544......999998778**********9555544.......77778..67777774....467777...**********....99999*****.5 PP

                 HTTSTTTEEEEEESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEESSSSCTTS.EEEE CS
     Trypsin 114 sslpvgttclvsGwgrtkekgksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswgkgcakgnr.pgvy 211
                 + l vg  ++++++g+++  g  +t++++ v+++ r+  + +      en+++++a     ++++G+SGG+lv+ +gel+Gi+++    + gn  +g++
  CTQ26511.1 185 DALRVG--DYTVAIGNPFGLG--ETVTSGIVSALGRSGLNVE----NYENFIQTDA-----AINRGNSGGALVNLNGELIGINTAILAPDGGNIgIGFA 270
                 645666..*************..9999999999999844443....57********.....*************************7777777669*** PP

                 EEGGGGHH CS
     Trypsin 212 tkvssyld 219
                 ++ +++++
  CTQ26511.1 271 IPSNMVKN 278
                 99998876 PP

>> PDZ_1  PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0024         4      18      68 ..     301     353 ..     295     361 .. 0.80
   2 !    8.2   0.1    0.0015       2.5      32      73 ..     413     455 ..     406     459 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0024
       PDZ_1  18 Lsyqlarsyaipvk.gvyvseasgsfklssk.ekkgviitsinnqptpnLdef 68 
                 L  +la  +++  + g +vs+   +++ ++  +k g +its+n++ +++  ++
  CTQ26511.1 301 LNSELAKAMKVDAQrGAFVSQVMPGSAAAKAgIKAGDVITSLNGKAISSFAAL 353
                 555777788887777******99888776555*************99987765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0015
       PDZ_1  32 gvyvse.asgsfklsskekkgviitsinnqptpnLdefievvk 73 
                 gv+v++  +g+++ + + kkg +i   n+qp++n  ++ +++ 
  CTQ26511.1 413 GVVVNNvKAGTPAAQIGLKKGDVIVGANQQPVKNIADLRKIFD 455
                 56665415677888888********************999875 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.6   4.3e+03      22      41 ..     203     222 ..     202     232 .. 0.84
   2 !    8.4   0.1    0.0012         2      30      78 ..     325     372 ..     295     391 .. 0.70
   3 !    6.8   0.1    0.0039       6.4      28      67 ..     420     457 ..     415     471 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.6
                  S-TTSSS-B-GGGGGS---. CS
  Tricorn_PDZ  22 GdswdeearSPLaepGvnvr 41 
                  G++  +   S+L ++G+nv+
   CTQ26511.1 203 GETVTSGIVSALGRSGLNVE 222
                  77788888999*****9996 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0012
                  B-GGGGGS---.TT-EEEEETTEE-BTTB-HHHHHHTT.TTSEEEEEEE- CS
  Tricorn_PDZ  30 rSPLaepGvnvreGdlilavdgepvskekgiaelLvgk.agkeveLtvkr 78 
                   S+ a+ G++  +Gd+i++++g+ +s+ + +      +  g++veL + r
   CTQ26511.1 325 GSAAAKAGIK--AGDVITSLNGKAISSFAALRAQVGTMpIGSKVELGLLR 372
                  5778899999..8***********99866654433222145666666666 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0039
                  S-B-GGGGGS---.TT-EEEEETTEE-BTTB-HHHHHHTT CS
  Tricorn_PDZ  28 earSPLaepGvnvreGdlilavdgepvskekgiaelLvgk 67 
                  +a  P a+ G++  +Gd+i+  + +pv++ +++ +++  k
   CTQ26511.1 420 KAGTPAAQIGLK--KGDVIVGANQQPVKNIADLRKIFDAK 457
                  667788899988..9*************999998887665 PP

>> DUF3394  Domain of unknown function (DUF3394)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.018        30     120     149 ..     314     343 ..     277     350 .. 0.82
   2 !   10.9   0.2   0.00017      0.27      66     148 ..     355     439 ..     348     449 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.018
     DUF3394 120 dgkvlvdevefgspaekagldfdfeiveve 149
                 +  + v++v+ gs a+kag++ ++ i++++
  CTQ26511.1 314 QRGAFVSQVMPGSAAAKAGIKAGDVITSLN 343
                 446789********************9986 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00017
     DUF3394  66 evveelpkgselrlkvegenlegeeiektvalplge.....eatgeerLeaaGltlleedgkvlvdevefgspaekagldfdfeivev 148
                 + v ++p gs+++l +     +g++++ tv+l+ ++     ++t ++ +e a ++   +d+ v+v++v+ g+pa++ gl+ ++ iv  
  CTQ26511.1 355 AQVGTMPIGSKVELGLL---RDGKPVTVTVELQQSNqtqvdSSTIFNGIEGAEMSNKGQDKGVVVNNVKAGTPAAQIGLKKGDVIVGA 439
                 56666777777776544...47899999999999886666566666677888888888899*********************999865 PP

>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.21      54     145 ..     320     420 ..     312     425 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
  Complex1_51K  54 heileGlkiaaealgaekgvigvrdekpeaiealekalaeakaagl...........ldievvklagkYpaGeekaLiesltgrevprgkppadvgv 139
                   ++++ G ++a+  ++a  ++  ++++  ++++al++++   +               ++++v   ++  ++ +++++++ ++g e+++++   d+gv
    CTQ26511.1 320 SQVMPGSAAAKAGIKAGDVITSLNGKAISSFAALRAQVGTMPIGSKvelgllrdgkpVTVTVELQQSNQTQVDSSTIFNGIEGAEMSNKG--QDKGV 414
                   68889999999999***********************8888764447889999**9****************************999885..79*** PP

  Complex1_51K 140 vvnNve 145
                   vvnNv+
    CTQ26511.1 415 VVNNVK 420
                   *****7 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0007       1.1       3      29 ..     326     352 ..     325     367 .. 0.83
   2 ?   -1.1   0.0       1.9     3e+03      44      56 ..     413     424 ..     401     427 .. 0.77
   3 ?   -0.3   0.1       1.1   1.8e+03       5      22 ..     414     431 ..     413     450 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0007
                 EEEESSTB-TT-BEBTTTEEEECECGG CS
         SAF   3 VvvAardikaGeviteddltlkrpias 29 
                 ++ A++ ikaG+vit  + +++++ a+
  CTQ26511.1 326 SAAAKAGIKAGDVITSLNGKAISSFAA 352
                 589*****************9998655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.9
                 TEEESS-B-TT-B CS
         SAF  44 GkratrdikaGep 56 
                 G ++ +++kaG+p
  CTQ26511.1 413 G-VVVNNVKAGTP 424
                 6.77777777776 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.1
                 EESSTB-TT-BEBTTTEE CS
         SAF   5 vAardikaGeviteddlt 22 
                 v+++++kaG+   + +l+
  CTQ26511.1 414 VVVNNVKAGTPAAQIGLK 431
                 556666666655554444 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.33   5.4e+02      46      69 ..     114     138 ..     111     145 .. 0.78
   2 ?    9.6   0.5   0.00019      0.31     627     651 ..     230     254 ..     220     256 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.33
                    TTTEE-EE-.STT-EEEE-HHHHHH CS
  Peptidase_S46  46 lggCtasfV.SpeGLvlTNHHCayg 69 
                        ++ ++ +++G v+TN H++ +
     CTQ26511.1 114 MALGSGVIIdAAKGYVVTNNHVVDN 138
                    5667888885679********9876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00019
                    ES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 627 stnDitGGNSGSPvlngkgelvGla 651
                    +++ i  GNSG +++n +gel+G++
     CTQ26511.1 230 TDAAINRGNSGGALVNLNGELIGIN 254
                    5677889****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3491.72
//
Query:       CTQ26512.1  [L=403]
Description: DNA-binding transcriptional activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-49  165.6   0.2    6.3e-49  165.1   0.2    1.3  1  Diacid_rec  Putative sugar diacid recognition
      1e-22   79.7   5.5    2.8e-22   78.3   1.9    2.7  3  HTH_30      PucR C-terminal helix-turn-helix domain
    5.5e-20   71.8   0.1    1.4e-19   70.4   0.1    1.8  1  GGDEF_2     GGDEF-like domain
  ------ inclusion threshold ------
      0.053   13.8   0.0       0.13   12.5   0.0    1.7  1  GAF_2       GAF domain


Domain annotation for each model (and alignments):
>> Diacid_rec  Putative sugar diacid recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.1   0.2   1.4e-52   6.3e-49       1     133 [.      24     156 ..      24     157 .. 0.99

  Alignments for each domain:
  == domain 1  score: 165.1 bits;  conditional E-value: 1.4e-52
  Diacid_rec   1 LdkelAqkIveeimeiigyninvmdekGiIIasgdksRigtlHegAlevikekkeveiteeeakklkgvkpGinlpivfngevvGviGitGepeevrpy 99 
                 Ld+++Aq+Iv ++m+ii+ ninvmd++G+II+sgd++Rig+lHegAl v++++++v i+++ a++l+gv++Ginlp++++ge+vGviG+tGepe++r+y
  CTQ26512.1  24 LDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPESLRKY 122
                 789************************************************************************************************ PP

  Diacid_rec 100 aelvkktaellleeaelkeqlqrrerakeelvee 133
                 +elv +tae++le+++l++ l +++r +eelv +
  CTQ26512.1 123 GELVCMTAEMMLEQSRLMHLLAQDSRLREELVMN 156
                 ******************************9976 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.057   2.6e+02      33      51 ..     167     185 ..     166     189 .. 0.83
   2 ?   -3.1   0.0       1.6   7.1e+03      33      54 ..     246     267 ..     244     268 .. 0.74
   3 !   78.3   1.9   6.2e-26   2.8e-22       1      58 [.     341     398 ..     341     399 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.057
                 HHHHHHHHS--TTSHHHHH CS
      HTH_30  33 Lrrieellgldlddpddrl 51 
                 L+ + + lg+dl++p+  +
  CTQ26512.1 167 LNEWAQRLGIDLNQPRVVA 185
                 6789999*******98765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.6
                 HHHHHHHHS--TTSHHHHHHHH CS
      HTH_30  33 LrrieellgldlddpddrlaLy 54 
                 +rr+e+l  +  ++++ r+++ 
  CTQ26512.1 246 VRRVEQLIARMKENGQLRFRVA 267
                 6899999888877777777765 PP

  == domain 3  score: 78.3 bits;  conditional E-value: 6.2e-26
                 ...HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHH CS
      HTH_30   1 LleTLraylenggnisatAkaLhvHrnTlryRLrrieellgldlddpddrlaLylAlr 58 
                 L++TL+a+++++ +  at+kaL++HrnTl yRL+ri+el+gldl ++ddrl Ly+Al+
  CTQ26512.1 341 LRRTLQAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGSFDDRLLLYIALQ 398
                 789*****************************************************98 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.1   3.2e-23   1.4e-19       4     114 ..     163     289 ..     159     291 .. 0.79

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 3.2e-23
     GGDEF_2   4 sdeellerarrlgldldgpyvvvvielee......daerllraleealralgpdalvavrgd.rlvlllpaede...edae...allerlarrlgg... 86 
                 ++++l e+a+rlg+dl++p+vv++ie+++      +a + l++l++al + ++++lva+ +  + v+l pa ++   +da+   + +e+l +r+++   
  CTQ26512.1 163 HTPALNEWAQRLGIDLNQPRVVAMIEVDSgqlgvdSAMAELQQLQNALTTPDRNNLVAIVSLtEMVVLKPALNSfgrWDADdhvRRVEQLIARMKEngq 261
                 566999*********************887777767788************999999987764888888865533336666445444444444444777 PP

     GGDEF_2  87 lsvriGiGspveglaglrrSyreArrAl 114
                 l++r+++G+ ++g+  ++rSyr Ar+++
  CTQ26512.1 262 LRFRVALGNFFTGPGSIARSYRTARTTM 289
                 7************************987 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.9e-05      0.13      86     116 ..      88     117 ..      46     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.9e-05
                 HHHTT--EEEEEE-TTS---EEEEES..... CS
       GAF_2  86 ghaglrsflavPlisegrvvGvlnlyankpp 116
                   +g+r ++ +Pl+ eg++vGv++l + +p+
  CTQ26512.1  88 HLHGVRQGINLPLRLEGEIVGVIGL-TGEPE 117
                 45778888****************9.55554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3099.28
//
Query:       CTQ26513.1  [L=128]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-55  186.1   2.2    2.6e-55  185.9   2.2    1.0  1  DUF3461   Protein of unknown function (DUF3461)
  ------ inclusion threshold ------
       0.16   11.5   1.7        6.3    6.2   0.0    2.1  2  FIN1      Filaments in between nuclei protein-1


Domain annotation for each model (and alignments):
>> DUF3461  Protein of unknown function (DUF3461)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.9   2.2   2.9e-59   2.6e-55       1     125 []       1     125 [.       1     125 [. 0.99

  Alignments for each domain:
  == domain 1  score: 185.9 bits;  conditional E-value: 2.9e-59
     DUF3461   1 myptLkslgiteleeiekytLrqegekDiLkiYfkkekgellaksvkfkfprqrkkvlvdsgseeykevseisavlrkvleeLdkltekkkeekdikek 99 
                 my++Lkslgit+++ei++y+Lrqe+++DiLkiYf+k+kge++aksvkfk+prqrk+v +d   + ykev+eis++lr+v++eLd++ +++++e d+k+k
  CTQ26513.1   1 MYDNLKSLGITNPDEIDRYSLRQEANNDILKIYFQKDKGEFFAKSVKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYVIDELDQICQRDRTEIDLKRK 99 
                 9************************************************************************************************** PP

     DUF3461 100 llkdlkhlekvvnskikeierklekl 125
                 +l+dl+hle+vv +ki+eie++lekl
  CTQ26513.1 100 ILDDLRHLESVVTNKISEIEADLEKL 125
                 ************************97 PP

>> FIN1  Filaments in between nuclei protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0   0.00071       6.3     179     209 ..      25      56 ..      11      91 .. 0.61
   2 ?    4.6   1.3    0.0022        20     214     242 ..      99     127 ..      67     128 .] 0.82

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00071
        FIN1 179 lnselakegks.kksetrkksvkfelpeddee 209
                  n+++ k   +  k e + ksvkf+ p++ ++
  CTQ26513.1  25 ANNDILKIYFQkDKGEFFAKSVKFKYPRQRKT 56 
                 455554444444688999*********99643 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0022
        FIN1 214 kelkdikklleellerqdelesrlsklee 242
                 k l d+++l + ++++++e+e  l+kl +
  CTQ26513.1  99 KILDDLRHLESVVTNKISEIEADLEKLTR 127
                 44789*******************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       953  (0.0531541); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1096.94
//
Query:       CTQ26514.1  [L=274]
Description: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-25   88.8   0.6    3.1e-25   88.2   0.6    1.3  1  THDPS_N_2  Tetrahydrodipicolinate N-succinyltransferase N-ter
    5.1e-13   48.5   6.7    7.8e-13   47.9   0.7    2.7  2  Hexapep_2  Hexapeptide repeat of succinyl-transferase
      6e-12   44.8   7.6    1.9e-06   27.4   0.3    3.4  3  Hexapep    Bacterial transferase hexapeptide (six repeats)


Domain annotation for each model (and alignments):
>> THDPS_N_2  Tetrahydrodipicolinate N-succinyltransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.6   5.2e-29   3.1e-25       1      67 []       3      69 ..       3      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 5.2e-29
                HHHHHHHHHHHTGGG--SSS--HHHHHHHHHHHHHHHTTSS-SEEEETTEEEE-HHHHHHHHHHHHH CS
   THDPS_N_2  1 sLesdIeaawerrdelepetagaearaaveevleaLdaGelRvAekkdgeWevneWvKkAiLLsFrl 67
                +L++ Ie+a+err++++p+++++ +r+av++v+++Ld+G+lRvAek dg+W++++W+KkA+LLsFr+
  CTQ26514.1  3 QLQNVIESAFERRADITPANVDTVTREAVNQVIALLDSGALRVAEKIDGQWVTHQWLKKAVLLSFRI 69
                69***************************************************************97 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.7     0.014        85      18      31 ..     150     163 ..     144     165 .. 0.79
   2 !   47.9   0.7   1.3e-16   7.8e-13       1      33 [.     175     209 ..     175     210 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.014
                 EEE-TT-EE-TT-E CS
   Hexapep_2  18 vslGdncvvgaGvv 31 
                  ++G+n++++ Gv 
  CTQ26514.1 150 AQIGKNVHLSGGVG 163
                 589******99995 PP

  == domain 2  score: 47.9 bits;  conditional E-value: 1.3e-16
                 .EEE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE- CS
   Hexapep_2   1 pviIGdnCliGanagi..GvslGdncvvgaGvvit 33 
                 p+iI+dnC+iGa++++  Gv++++++v+++Gv++ 
  CTQ26514.1 175 PTIIEDNCFIGARSEVveGVIVEEGSVISMGVYLG 209
                 89*************669***************96 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.14   8.5e+02      24      34 ..     113     123 ..     105     125 .. 0.62
   2 !   17.8   2.1   3.4e-07     0.002       3      36 .]     133     166 ..     114     166 .. 0.89
   3 !   27.4   0.3   3.1e-10   1.9e-06       2      35 ..     176     209 ..     175     210 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.14
                 TTEEEETTEEE CS
     Hexapep  24 dnvkIgagvvi 34 
                  ++ I++++v+
  CTQ26514.1 113 QGAFIARNTVL 123
                 56667777664 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 3.4e-07
                 EEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   3 vIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                  + ++++++ +a++g+ ++IG+nv++  gv+igg
  CTQ26514.1 133 YVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGG 166
                 5567889999**********************97 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 3.1e-10
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 t+I++n++Ig+ + + ++V++ ++++I  gv++g
  CTQ26514.1 176 TIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLG 209
                 89*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2081.51
//
Query:       CTQ26515.1  [L=887]
Description: uridylyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-33  114.8   0.7    3.4e-33  114.8   0.7    2.7  2  GlnD_UR_UTase  GlnD PII-uridylyltransferase
    2.1e-19   69.0   0.2    6.1e-09   35.5   0.2    2.7  2  ACT            ACT domain
    2.8e-17   63.1   0.4    7.7e-17   61.7   0.4    1.8  1  HD             HD domain
    1.4e-07   31.7   0.0    3.7e-07   30.3   0.0    1.7  1  NTP_transf_2   Nucleotidyltransferase domain
    2.7e-05   24.0   0.0    8.6e-05   22.4   0.0    1.9  1  DUF294         Putative nucleotidyltransferase DUF294
  ------ inclusion threshold ------
      0.012   16.1   0.0       0.11   13.0   0.0    2.2  2  ACT_4          ACT domain
      0.056   13.5   0.0       0.13   12.3   0.0    1.6  1  Polbeta        Polymerase beta, Nucleotidyltransferase


Domain annotation for each model (and alignments):
>> GlnD_UR_UTase  GlnD PII-uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   0.7   1.3e-36   3.4e-33       2     146 .]     190     328 ..     189     328 .. 0.96
   2 ?   -1.4   0.2      0.87   2.2e+03      83     119 ..     544     579 ..     526     643 .. 0.62

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 1.3e-36
  GlnD_UR_UTase   2 fmkakieeekarrgrsd.t..llepniKlGpGGlRdiefivqvlqlirGgrdpelrerstlealeelvergllteeeakelreayrflrrlehrLq 94 
                    f++ak+ee++ r++r++ t  +lep++K +pGGlRdi+++ +v+++++           ++++++e+v  g+lte+e +el+e+ + l+r++++L+
     CTQ26515.1 190 FFAAKVEEQNVRHQRYHgTsyNLEPDVKSSPGGLRDIHTLQWVARRHF-----------GATSMDEMVGFGFLTEAERNELNECLHQLWRIRFALH 274
                    89****************89****************************...........************************************* PP

  GlnD_UR_UTase  95 lladrqthrLpfdeeeqrrlaealgy.redkaa...fmkelfqhaerVrrlfekll 146
                    l   r ++rL+fd   q  +a++lgy  +++++   +mk++f++++rV++l+++ll
     CTQ26515.1 275 LELTRYDNRLLFD--RQLSVARRLGYeGDGNQPiehMMKDFFRVTRRVSELNQMLL 328
                    *************..***********6555555889*****************985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.87
  GlnD_UR_UTase  83 yrflrrlehrLqlladrqthrLpfdeeeqrrlaealg 119
                    + + + ++h+L +   +q   + +  e  ++ ae ++
     CTQ26515.1 544 QLVAWLVRHHLLMSVTAQRRDIQDP-EVIKQFAEEVQ 579
                    4445666666665555555555433.44444444444 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   8.1e-11   2.1e-07       2      55 ..     706     757 ..     705     768 .. 0.86
   2 !   35.5   0.2   2.4e-12   6.1e-09       3      64 ..     814     871 ..     812     874 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 8.1e-11
                 EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHH CS
         ACT   2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedl 55 
                  +++  pDrP l+a+v+g l +r+++++ +++++++d  ++ ++++iv ++++ 
  CTQ26515.1 706 EIFIWSPDRPYLFAAVCGELDRRNLSVHDAQIFTTRD--GMAMDTFIVLEPDGS 757
                 68999********************************..788888888777655 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 2.4e-12
                 EEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHT CS
         ACT   3 lrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkk 64 
                 l++ + D+PGlLarv++++ad+gi+++ + +++ ++    +v   +++ ++d  ++ ++l++
  CTQ26515.1 814 LELIALDQPGLLARVGQVFADLGISLHGARITTIGE----RVEDLFIIATADRRALNNELQQ 871
                 788899****************************77....6666666666666666666665 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.4     3e-20   7.7e-17       1     121 [.     465     598 ..     465     599 .. 0.94

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 3e-20
                 HHHHHHHHHHHHHHHHHHHHH............HHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS
          HD   1 rleHsleVaklarrlaedlge............eedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld...ledvakl 84 
                 ++eH+++V+  ++ +a+++ +             + +el+l+aaL+HDi+kg+ gd              H++ ga+ + ++ +++gl+   +++va+l
  CTQ26515.1 465 VDEHTVRVMLKLESFAKEETRsrhplcvelwprLTHPELILIAALFHDIAKGRGGD--------------HSILGAQDVLKFAELHGLNsreTQLVAWL 549
                 579****************99**********************************9..............***************************** PP

                 HHTTCCHHHHHHHH.........H...HHHCCTSCHHHHHHHHHHHHHH CS
          HD  85 irehheswegkkrp.........r...glaerqlslearivklaDrlaa 121
                 +r+h+ ++++++r+         +   + ++++  +++ ++ +aD +a+
  CTQ26515.1 550 VRHHLLMSVTAQRRdiqdpevikQfaeEVQTENRLRYLVCLTVADICAT 598
                 **************9988776651677******************9986 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.5e-10   3.7e-07       2      70 ..      70     134 ..      69     165 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.5e-10
                   HHHHHHHHHHTT.TSEEEEEHHHHCTTSCTTSSEEEEEEESTTCHHHHHHEHHHHHHHHCCCEEECTTEE CS
  NTP_transf_2   2 kklleelkelep.vakvvlfGSyarGtalkgSDiDllvvlpeevsrekkeegleklaeiikfleellgle 70 
                    +l+ ++ +++  +  +v++G y rG++++ SD+Dll+++++  ++      +  ++ +   l +  +le
    CTQ26515.1  70 QRLWSACGFESVsDLALVAVGGYGRGELHPLSDVDLLILSRKKLPD-----DQAQKVGELLTLLWDVKLE 134
                   577888888888899****************************773.....3444444444444444444 PP

>> DUF294  Putative nucleotidyltransferase DUF294
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   3.4e-08   8.6e-05       3      89 ..      40     123 ..      38     136 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 3.4e-08
      DUF294   3 ierlvrallaegvkaealarlvselndallrrlielaeeelgkppvpfallvmGSeGReEqtlktDqDnalvledeeeeaareyfae 89 
                 +++ + +++++g+ ae+l ++ +e+ d+ll+rl++ +  e      + al+++G  GR+E +  +D D  ++ +++  +++++++ e
  CTQ26515.1  40 FQHWLGEAFDSGIVAEQLIAARTEFIDQLLQRLWSACGFE---SVSDLALVAVGGYGRGELHPLSDVDLLILSRKKLPDDQAQKVGE 123
                 567788999*****************************99...8999*********************9999999776666666554 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.53   1.4e+03       9      48 ..     707     745 ..     704     752 .. 0.85
   2 ?   13.0   0.0   4.5e-05      0.11       9      63 ..     814     866 ..     811     871 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.53
       ACT_4   9 leveaedrkglLaditqviseekanivsvnaktrkkdgla 48 
                 + + + dr+ l+a ++  +   + ++++ ++ t++ dg+a
  CTQ26515.1 707 IFIWSPDRPYLFAAVCGELDRRNLSVHDAQIFTTR-DGMA 745
                 5566789************************9987.8876 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4.5e-05
       ACT_4   9 leveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLs 63 
                 le++a d++glLa++ qv+++ +++++  +++t    + +e  + +   d++ L+
  CTQ26515.1 814 LELIALDQPGLLARVGQVFADLGISLHGARITTI--GERVEDLFIIATADRRALN 866
                 789****************************995..5678878878777777776 PP

>> Polbeta  Polymerase beta, Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.2e-05      0.13      17      54 ..      87     127 ..      78     149 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.2e-05
                 TEEEEEE-S------EEEEEEEESS-...--HHHHHHHHHH CS
     Polbeta  17 ylFGSrakgkareeSDiDlavllkek...ldleeelelaae 54 
                 +  G + +g++++ SD+Dl +l ++k   ++ ++  el + 
  CTQ26515.1  87 VAVGGYGRGELHPLSDVDLLILSRKKlpdDQAQKVGELLTL 127
                 4558899*******************654444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 6696.87
//
Query:       CTQ26516.1  [L=264]
Description: methionine aminopeptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-52  178.8   0.1    1.2e-52  178.7   0.1    1.0  1  Peptidase_M24  Metallopeptidase family M24
  ------ inclusion threshold ------
       0.12   12.3   0.0        8.1    6.4   0.0    2.3  2  CBM39          Carbohydrate binding domain (family 32)


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.1   1.3e-56   1.2e-52       1     209 []      12     242 ..      12     242 .. 0.90

  Alignments for each domain:
  == domain 1  score: 178.7 bits;  conditional E-value: 1.3e-56
                    HHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT.....TCEESSSSEEEEGGGGGSTTTBCSSSB.--TTEEEEEEEEEEETTEEE CS
  Peptidase_M24   1 elirkaariasaaleavleaikpgvterelaaeieattlkrhg.....arglafppivasgenaavlhytpndrv.lkegdlvlidagaeydgyas 90 
                    e++r a+r+a+++le +   +kpgv++ el+++++++++ ++       +++++p++v++++n+ v+h++p+d + lk+gd+v+id+++  d +++
     CTQ26516.1  12 EKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQKaisacLGYHGYPKSVCISVNEVVCHGIPDDGKlLKDGDIVNIDVTVIKDDFHG 107
                    68***************999****************9776655899999999*******************977758******************* PP

                    EEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEESSSSSEEEEEESS..STTCSSB--TTBEE CS
  Peptidase_M24  91 DitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesaglakffphglGHgvGlevhdegpsvsr..esndgrkleeGmvf 184
                    D++ +++vGk+t   ++l+++++e ++ a+++vkpG++l++i+aa+++++e++g+ +++++++GHg+G+ +h+e p+v +   + ++++l++Gm+f
     CTQ26516.1 108 DTSKMFIVGKPTILGERLCRITQESLYLALRMVKPGINLRTIGAAIQKFVEAEGF-SVVREYCGHGIGRGFHEE-PQVLHydSPETNVVLKPGMTF 201
                    *********99999999***********************************9**.999**************9.**9775544489********* PP

                    EEEEEEEEET.........TT.......E.EEEEBEEEEEES CS
  Peptidase_M24 185 tiEpgiyfap.........ge.......g.gvriedtvlvte 209
                    tiEp++  a          g+       + +++ e+t++vt+
     CTQ26516.1 202 TIEPMVN-AGkkeirsmkdGWtvktkdrSlSAQYEHTIVVTD 242
                    ****877.3223333444444777888877**********96 PP

>> CBM39  Carbohydrate binding domain (family 32)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0   0.00091       8.1      63      97 ..      83     116 ..      80     132 .. 0.82
   2 ?    3.5   0.0     0.007        63      64      98 ..     191     229 ..     185     245 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00091
       CBM39  63 deeavikkgDtlyywvivqkngkgyrstkqkftvt 97 
                 d+   +k gD++++ v v k++ ++ +t++ f+v 
  CTQ26516.1  83 DDGKLLKDGDIVNIDVTVIKDD-FHGDTSKMFIVG 116
                 677789*************655.999999999997 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.007
       CBM39  64 eeavikkgDtlyywvivqkngkgyrstkqkftvt....n 98 
                 +++v+k+g t  +  +v  ++k +rs k  +tv+    +
  CTQ26516.1 191 TNVVLKPGMTFTIEPMVNAGKKEIRSMKDGWTVKtkdrS 229
                 689******************************955432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1879.69
//
Query:       CTQ26517.1  [L=241]
Description: 30S ribosomal protein S2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-94  313.4   0.0      6e-94  313.3   0.0    1.0  1  Ribosomal_S2  Ribosomal protein S2


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.3   0.0   3.3e-98     6e-94       1     215 []       9     224 ..       9     224 .. 0.99

  Alignments for each domain:
  == domain 1  score: 313.3 bits;  conditional E-value: 3.3e-98
  Ribosomal_S2   1 LLeagvhfGhqtrrwnpkmkpyIygerngihiidlektlaalrraykvvkevaakggkilfvgtkkqakeavkeaakrangyyvnerWlgGtLTNfk 97 
                   +L+agvhfGhqtr+wnpkmkp+I+g+rn++hii+lekt++++++a+  ++++aa++gkilfvgtk++a+eavk+aa  +++++vn+rWlgG+LTN+k
    CTQ26517.1   9 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIAARKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWK 105
                   79*********************************************************************************************** PP

  Ribosomal_S2  98 tikksikklkeleeleedgeld.ltkkealklkkekekleknlggikkmkklPdlvvvldpkkekiavkEakklgipviaivDtnvdpdlvdypIpa 193
                   t+++sik+lk+le++++dg++d ltkkeal+ ++e +kle++lggik+m  lPd+++v+d+++e+ia+kEa++lgipv+aivDtn+dpd vd++Ip+
    CTQ26517.1 106 TVRQSIKRLKDLETQSQDGTFDkLTKKEALMRTRELDKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPG 202
                   *********************99************************************************************************** PP

  Ribosomal_S2 194 Nddsirsiklilgvladaieeg 215
                   Ndd+ir+++l+lg++a ++ eg
    CTQ26517.1 203 NDDAIRAVSLYLGAVAATVREG 224
                   *****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1948.64
//
Query:       CTQ26518.1  [L=283]
Description: protein chain elongation factor EF-Ts [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-65  220.6   1.8    1.6e-65  220.6   1.8    1.5  2  EF_TS     Elongation factor TS


Domain annotation for each model (and alignments):
>> EF_TS  Elongation factor TS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.6   1.8   8.8e-70   1.6e-65       1     208 []      71     263 ..      71     263 .. 0.98
   2 ?   -3.3   0.1      0.32   5.8e+03       8      15 ..     268     275 ..     267     280 .. 0.74

  Alignments for each domain:
  == domain 1  score: 220.6 bits;  conditional E-value: 8.8e-70
       EF_TS   1 avivevnsETDFVAknekFqelvkkvaeaaleekakdleellalkledetveealkekiakigEkielrrfakleaekevvasYiHgngrigvlvaleg 99 
                 ++i+evn++TDFVAk+  Fq++++kv++aa++ k++d+e l+a      ++ee++ +++akigE+i++rr+a+le+  +v++sY+Hg  rigvlva++g
  CTQ26518.1  71 GYILEVNCQTDFVAKDGGFQAFADKVLDAAVAGKISDVEVLKA------QFEEERVALVAKIGENINIRRIAVLEG--DVLGSYQHG-ARIGVLVAAKG 160
                 579************************************9985......6**************************..*********.9********** PP

       EF_TS 100 ksdealkelakqiAmhiaAmnPqylsedevdaevlekekeilkeqakeegkpekiiekiveGrlekflkevcLleQeyvkddkktVeqvlkeaskelkv 198
                 +++    el+kq+Amh+aA++P++++ ++v+aev+eke +++ + a ++gkp++i+ek+veGr++kf  ev+L+ Q++v++++k+V q+lke+++  +v
  CTQ26518.1 161 ADE----ELVKQLAMHVAASKPEFVKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKSVGQLLKEHNA--DV 253
                 988....8***************************************************************************************..** PP

       EF_TS 199 vkfvrfevGe 208
                 + f+rfevGe
  CTQ26518.1 254 TGFIRFEVGE 263
                 *********8 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.32
       EF_TS   8 sETDFVAk 15 
                  ETDF A 
  CTQ26518.1 268 VETDFAAE 275
                 59999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2300.47
//
Query:       CTQ26519.1  [L=241]
Description: uridylate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-28   98.1   0.3    6.8e-28   97.9   0.3    1.1  1  AA_kinase  Amino acid kinase family


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.3   3.8e-32   6.8e-28       1     241 []      10     219 ..      10     219 .. 0.92

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 3.8e-32
                 TEEEEEE-TTCCCCTCC.....HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHH CS
   AA_kinase   1 krvVvKlGGssltdkee.....aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaall 94 
                 kr+ +Kl G +l   e+     + l+r+a++i++l+e g+++ vV+Ggg+  +g   +k+g+++                    d +++l++ ++   +
  CTQ26519.1  10 KRILLKLSGEALQGSEGfgidaSILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVG-----------------DHMGMLATVMNGLAM 91 
                 799**********77777*******************************998888888456666655.................9************** PP

                 HTTHGEEEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTC CS
   AA_kinase  95 aaglpavglsaaaldateagrdegsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkv 193
                 + +l+   ++a+ + a+      + +g++ +++ ++   ll ++ v++l+ +    ++    ++++D +a+l + +++Ad ++ +t VdGV++adp k+
  CTQ26519.1  92 RDALHRAYVNARLMSAI------PLNGVCDNYSWAEAISLLRNNRVVILSAGT--GNP----FFTTDSAACLRGIEIEADVVLKATKVDGVFTADPAKD 178
                 ************99976......4688******99999999999888888854..444....99*********************************** PP

                 CTTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHHHCTT-EEEEEE CS
   AA_kinase 194 pdarllpeisvdeaeesaselatgGmkvkhpaalaaarrggipvvItn 241
                 p+a+++++++++e++e          kv+++aa+ +ar ++ p++++n
  CTQ26519.1 179 PSATMYDQLTYSEVLE-------KELKVMDLAAFTLARDHKLPIRVFN 219
                 ****************.......***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1799.76
//
Query:       CTQ26520.1  [L=185]
Description: ribosome recycling factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-62  210.9   1.7    1.4e-62  210.4   1.7    1.2  1  RRF       Ribosome recycling factor
  ------ inclusion threshold ------
      0.081   12.6   2.5       0.27   10.9   1.0    2.1  2  DUF842    Eukaryotic protein of unknown function (DUF842)


Domain annotation for each model (and alignments):
>> RRF  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.4   1.7   1.6e-66   1.4e-62       1     162 []      20     183 ..      20     183 .. 0.99

  Alignments for each domain:
  == domain 1  score: 210.4 bits;  conditional E-value: 1.6e-66
                 HHHHHHHSS-SSSSCGGGTTSEEEETTEEEEGGGTEEEEESSTTEEEEEESSCCHHHHHHHHHHHSCC-SEEEEESSEEEEE--SSSHHHHHHHHHHHH CS
         RRF   1 lkkelsklrtgranpslldnikVeyygkktpLnqlAqvsvkeartllitpfdkslvkaiekaIlksdlglnpqqdgevlrvpipplTeErrkelvkeak 99 
                 +k+++sk+rtgra+pslld i Veyyg++tpL+qlA+v+v+++rtl i++fd+s+  a+ekaI++sdlglnp++ g+ +rvp+pplTeErrk+l+k ++
  CTQ26520.1  20 FKNQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSAAVEKAIMASDLGLNPSSAGSDIRVPLPPLTEERRKDLTKIVR 118
                 799************************************************************************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHH.C.S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
         RRF 100 kaaekakvairniRrdankklkklek.k.iseDdvkkaekeiqkltdkyikeidellkakekell 162
                  +ae+a+va+rn+Rrdan+k+k+l k k iseDd ++ ++++qk+td  ik++d++l++ke+el+
  CTQ26520.1 119 GEAEQARVAVRNVRRDANDKVKALLKeKeISEDDDRRSQDDVQKMTDAAIKKVDAALADKEAELM 183
                 ************************99669***********************************8 PP

>> DUF842  Eukaryotic protein of unknown function (DUF842)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.044     4e+02     100     120 ..       7      23 ..       2      31 .. 0.49
   2 ?   10.9   1.0     3e-05      0.27      58     120 ..     111     174 ..     106     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.044
      DUF842 100 akaekelekCvakCvddhikl 120
                 ++ae ++ekCv+       ++
  CTQ26520.1   7 KDAEIRMEKCVE----AFKNQ 23 
                 344445555553....33333 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 3e-05
      DUF842  58 qkaqkvvqqEleqfqerLqrcvmvCqdkakdklgpns.sekqtakaekelekCvakCvddhikl 120
                 +++ k+v +E eq    + +   +++dk+k  l++++ se++  + + +++k+++ ++++  + 
  CTQ26520.1 111 KDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKEKEiSEDDDRRSQDDVQKMTDAAIKKVDAA 174
                 6778999**************************99888******************99986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1217  (0.0678789); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1421.70
//
Query:       CTQ26521.1  [L=400]
Description: 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-49  166.1   0.4    1.1e-48  165.2   0.4    1.5  1  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer
    1.6e-39  134.7   0.0    3.6e-39  133.6   0.0    1.6  1  DXPR_C           DXP reductoisomerase C-terminal domain
    8.5e-37  125.2   0.0    2.2e-36  123.9   0.0    1.8  2  DXP_redisom_C    1-deoxy-D-xylulose 5-phosphate reductoisomer
  ------ inclusion threshold ------
      0.035   14.1   0.1      0.095   12.7   0.1    1.7  2  DUF4265          Domain of unknown function (DUF4265)
      0.039   14.3   1.0       0.13   12.6   1.0    1.9  1  EccE             Putative type VII ESX secretion system trans
      0.089   12.3   0.0       0.23   10.9   0.0    1.6  2  Peptidase_S9     Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.2   0.4   3.7e-52   1.1e-48       1     129 []       4     132 ..       4     132 .. 0.99

  Alignments for each domain:
  == domain 1  score: 165.2 bits;  conditional E-value: 3.7e-52
                      EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHCHTT-SEE CS
  DXP_reductoisom   1 vviLGsTGSIGtqtLdvieenpdkfevvalaagsnvellaeqakefkpklvavadeeaaeelkealkekelktevlvGeealkelaeeeeadvv 94 
                      +++LGsTGSIG +tLdv+++np +f+v+al+ag+nv++++eq+ ef+p+++++ d+++ae+l+++l+e++++tevl+G++a++e+a+ +e+d v
       CTQ26521.1   4 LTVLGSTGSIGCSTLDVVRHNPGRFSVAALVAGKNVDRMVEQCLEFTPRYAVMDDAQSAERLRTRLHEHGCRTEVLSGQQAAAEVAALDEVDQV 97 
                      58******************************************************************************************** PP

                      EE--SSGGGHHHHHHHHHTTSEEEE--SHHHHHHH CS
  DXP_reductoisom  95 vaaivGaaGLkptlaaikagkriaLANKEsLVvaG 129
                      +aaivGaaGL ptlaai+agk+++LANKEsLV++G
       CTQ26521.1  98 MAAIVGAAGLVPTLAAIRAGKTVLLANKESLVTCG 132
                      *********************************98 PP

>> DXPR_C  DXP reductoisomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   1.2e-42   3.6e-39       1     114 [.     271     387 ..     271     388 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.2e-42
                 E-SS-THHHHHHHHHTTS-...------HHHHEEEEEB---TTTTCHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTSS-TTHHHHHHHHHHHTTT. CS
      DXPR_C   1 LgtpDMrlpIayaLayper...gverldlaklgsltFekpdlerFpclklayealkaggtapavlnAAnEvaveaFlegkisFldIaeiieevleseek 96 
                 Lg pDMr+pIa+++ +p+r   g+++ld+++l++l+F++pd++r+pclkla++a+  g++a+++lnAAnE+ v+aFl+g i+F+dIa+++ +vl++ + 
  CTQ26521.1 271 LGEPDMRTPIAHTMGWPQRlnsGAKPLDFCQLSNLSFSAPDYTRYPCLKLAMDAFDVGQAATTTLNAANEESVAAFLHGDIRFTDIAAVNLAVLDKMDL 369
                 89*****************87659*************************************************************************** PP

                 ...SSHHHHHHHHHHHHH CS
      DXPR_C  97 seaksledileldaeare 114
                 +e++s++d+l +daear+
  CTQ26521.1 370 QEPQSIDDVLVIDAEARA 387
                 *****************7 PP

>> DXP_redisom_C  1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.9   0.0   7.4e-40   2.2e-36       1      84 []     146     239 ..     146     239 .. 0.92
   2 ?   -3.3   0.0       3.4     1e+04       2      13 ..     379     390 ..     378     395 .. 0.76

  Alignments for each domain:
  == domain 1  score: 123.9 bits;  conditional E-value: 7.4e-40
                    EEE-SHHHHHHHHHS..........GCCCCTTEEEEEEEE--GTTTTS-HHHHCT-SHHHHHS-SS----HHHHHHHHHSHHHHHHHHHHHHHC CS
  DXP_redisom_C   1 ilpvDsEhsaifqll..........keekkkevekiiltasGGpfrklkleeleevtveealkhPnWsmGkkitvdsatlmNkglEvieakllf 84 
                    +lpvDsEh+aifq++          ++ +++ v++i+lt sGGpfr++  +el+++t+++a++hPnWsmG+ki+vdsat+mNkglE+iea++lf
     CTQ26521.1 146 LLPVDSEHNAIFQSMpetiqqhlgyADLARNGVSSILLTGSGGPFRETAVAELAAMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLF 239
                    69*************87776666654444599*************************************************************9 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.4
                    EE-SHHHHHHHH CS
  DXP_redisom_C   2 lpvDsEhsaifq 13 
                    l +D+E  ai++
     CTQ26521.1 379 LVIDAEARAIAH 390
                    679999999975 PP

>> DUF4265  Domain of unknown function (DUF4265)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.2e-05     0.095      51     103 ..      48      99 ..      29     106 .. 0.81
   2 ?   -3.6   0.0       3.4     1e+04      44      63 ..     137     156 ..     132     180 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.2e-05
     DUF4265  51 nstirvlvdekaelgesevreeLealgceveglsakllavdvpadvdleaike 103
                 ++t r  v ++a+ + + +r +L+++gc+ e+ls +  a +v+a ++++++ +
  CTQ26521.1  48 EFTPRYAVMDDAQSA-ERLRTRLHEHGCRTEVLSGQQAAAEVAALDEVDQVMA 99 
                 566666666666654.9*****************************9999976 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.4
     DUF4265  44 rvvkesGnstirvlvdekae 63 
                 + v++sG + + v  +++a 
  CTQ26521.1 137 EAVQQSGARLLPVDSEHNAI 156
                 44577777666555555443 PP

>> EccE  Putative type VII ESX secretion system translocon, EccE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.0   4.4e-05      0.13      38      76 ..      60      98 ..      58     125 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.4e-05
        EccE 38 aaarRlakaLreqGirarvleaeeldaalaalavglaaa 76
                  a+Rl ++L+e+G+r+ vl+ ++ +a +aal ++ ++ 
  CTQ26521.1 60 QSAERLRTRLHEHGCRTEVLSGQQAAAEVAALDEVDQVM 98
                5789***********************999998877655 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.6   4.9e+03      77     118 ..      16      56 ..      11      73 .. 0.58
   2 ?   10.9   0.0   7.7e-05      0.23     103     178 ..     224     299 ..     218     305 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.6
                   HHHHHHHH-GGG-SEEEEESE..---CCCHHCSTTSTHHHCCCC CS
  Peptidase_S9  77 ltgaalnqrpdlFkaavaevp..vvdvlrydsdtdllteeymew 118
                    t+ ++ ++p +F++a+ +++  v  ++ + ++   +t++y  +
    CTQ26521.1  16 STLDVVRHNPGRFSVAALVAGknVDRMVEQCLE---FTPRYAVM 56 
                   566667778888888777766112222222222...66665554 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 7.7e-05
                   CHHCSTTS.THH.HCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEE CS
  Peptidase_S9 103 rydsdtdl.lte.eymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvll 178
                   +++ +  l + e ++ ++  +++ e   + +s ++ + +  ++ ++L + G+ D r+p+a+++ + ++L++  k++++
    CTQ26521.1 224 TMMNKG-LeYIEaRWLFNASAQQMEVLIHPQSVIHSMVR-YQDGSVLAQLGEPDMRTPIAHTMGWPQRLNSGAKPLDF 299
                   444443.44666688888877666666666666666666.48***************************998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2927.03
//
Query:       CTQ26522.1  [L=258]
Description: undecaprenyl pyrophosphate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-78  262.7   0.1    2.8e-78  262.5   0.1    1.0  1  Prenyltransf    Putative undecaprenyl diphosphate synthase
  ------ inclusion threshold ------
      0.089   12.1   0.0       0.12   11.7   0.0    1.2  1  Glyco_hydro_97  Glycoside hydrolase 97
      0.094   13.1   0.0       0.22   11.9   0.0    1.6  2  Toprim_3        Toprim domain


Domain annotation for each model (and alignments):
>> Prenyltransf  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.5   0.1   4.7e-82   2.8e-78       1     224 []      29     249 ..      29     249 .. 0.95

  Alignments for each domain:
  == domain 1  score: 262.5 bits;  conditional E-value: 4.7e-82
                   EE--HHHHHHHTT.S-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEEGGGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEESSGGGS-H CS
  Prenyltransf   1 imDGNrRwAkkrgleereeGhkaGaealkeilelclelgvkvvtvYafSteNfkRskeevdalmellkeellkeelkellkegvrvrviGdlellpe 97 
                   imDGN+RwAk++g + r+ GhkaGa+++++ ++++++ g++++t+YafS+eN++R+++ev+almel+   +l++e+k+l++++vr+r+iGd++++++
    CTQ26522.1  29 IMDGNGRWAKRQG-KIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVW-ALDSEVKSLHRHNVRLRIIGDTTRFNA 123
                   9************.99999************************************************65.899************************ PP

                   HHHHHHHHHHHHHT.TTTSEEEEEEEEE-HHHHHHHHHHHHHHTT..SSSG.GGHSHHHHHCTSTT..TSSS-SEEEEESS--S-TTSSTTTTTT-E CS
  Prenyltransf  98 dvlealekaeeatkknnkklvlniavnYgsrdeiveavrelvkekseekkk.eeideetlekhlytakalpdpDlliRtsGeeRlSnFllwqlayse 193
                   +++e+++kae+ t+ nn++l+lnia nYg+r++i++ vr l+k++++ +   e+i+e++l++++ + ++l ++Dl+iRt+Ge+R+SnFl+wq+ay+e
    CTQ26522.1 124 RLQERIRKAEALTA-NNTGLTLNIAANYGGRWDITQGVRLLAKQVQDGTLLpEQITEDMLSQQVCM-HELAPVDLVIRTGGEHRISNFLIWQIAYAE 218
                   **************.8888**********************9888655443588899*******98.567*************************** PP

                   EEEESSSGGG--HHHHHHHHHHHHHCHHHTT CS
  Prenyltransf 194 lyfldvlWPdfskedllealleyqkrerrfg 224
                   lyf+dvlWPdf ++d+  al  + +rerrfg
    CTQ26522.1 219 LYFTDVLWPDFAEQDFEGALHAFVNRERRFG 249
                   *****************************98 PP

>> Glyco_hydro_97  Glycoside hydrolase 97
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.9e-05      0.12      25      85 ..      43     105 ..      29     141 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
  Glyco_hydro_97  25 kedfkhgantetvkryiDfAaengleyvlve.gwdegWee.kkkkekefdftkpypdfdleel 85 
                        f h a  ++v+r + fAa+ng+e++ ++    e+W++ +++ +  ++++    d ++++l
      CTQ26522.1  43 IRAFGHKAGAKSVRRAVSFAANNGIEALTLYaFSSENWNRpAQEVSALMELFVWALDSEVKSL 105
                     45678888999*******************844578888655554555555555555555555 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.6e-05      0.22      29      91 ..      11      86 ..       4      89 .. 0.86
   2 ?   -3.2   0.0       1.9   1.2e+04      62      72 ..     130     140 ..     105     150 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.6e-05
    Toprim_3 29 aanlkaiawpergkrvviaaD.nDaand............GreaaeklaerleaagieavllepaegeDwndvlqk 91
                ++ +++i+++ + ++v i  D n+  ++            G + ++++++ ++ +giea +l++ ++e wn  +q+
  CTQ26522.1 11 NQTVSEISPTHGCRHVAIIMDgNGRWAKrqgkirafghkaGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQE 86
                36788999*************666655599*********************************9888889976665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.9
    Toprim_3  62 klaerleaagi 72 
                 + ae+l+a++ 
  CTQ26522.1 130 RKAEALTANNT 140
                 33455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1970.11
//
Query:       CTQ26523.1  [L=285]
Description: CDP-diglyceride synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-69  234.9  19.6    1.5e-69  234.7  19.6    1.0  1  CTP_transf_1     Cytidylyltransferase family
  ------ inclusion threshold ------
       0.03   14.3   0.4       0.03   14.3   0.4    2.4  3  CarS-like        CDP-archaeol synthase
       0.13   12.7   3.7        7.5    7.1   1.2    2.8  3  Phage_holin_3_1  Phage holin family (Lysis protein S)
        8.9    6.7  19.0       0.31   11.4   4.7    3.0  2  DUF4199          Protein of unknown function (DUF4199)


Domain annotation for each model (and alignments):
>> CTP_transf_1  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.7  19.6   3.4e-73   1.5e-69       2     263 ..       4     278 ..       3     281 .. 0.88

  Alignments for each domain:
  == domain 1  score: 234.7 bits;  conditional E-value: 3.4e-73
                   HHHHHHHHHHHHHHHTTTSH..HHHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHH......HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHH- CS
  CTP_transf_1   2 qRvitalvlilivliilllgg.lvflllvavvvilalkElirlvrlkkrekrllll...llslvlllllllflylesliallklvlllvlvllllvl 94 
                    R+i+a+vli+iv+++l+l + + f+++++vv +la++E+ +l+   ++++r+ l+      l++++l ll  y   + + +    l++ +++++v 
    CTQ26523.1   4 YRLISAFVLIPIVIAALFLLPpMGFAIVTLVVCMLAAWEWGQLSGFTSTSQRVWLAvlcG-LLLAAMLFLLPEYHYDVHQPMVEGSLWASFAWWIVA 99 
                   69***************99998****************************9999998532.333333444445555555555555555555555555 PP

                   --...............HHHHHHHHHHHHHHHHHTHHHH.TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---B-S-TTS---BHHHHHHH CS
  CTP_transf_1  95 kvl............kskskklervilallallyvvlllqslllienikeglllvllllalvvaaDigaYffGklfGktkllpkiSPkKTveGfigG 179
                    +l            +sk  +l   il+++++++ +l l+++++ +n+++g+l++l++++lv+ aD+gaY+fGk+fGk+kl+pk+SP+KT++Gf+gG
    CTQ26523.1 100 LLLvlsypasaafwrHSKVLRLIFGILTIVPFFWGMLALRAWHYADNHYSGALWLLYVMILVWGADSGAYMFGKMFGKHKLAPKVSPGKTWQGFFGG 196
                   45569*9**999999999999999999999999999999********************************************************** PP

                   HHHHHHHHHHHHHHHHCTS---TTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSS-S-SSSSS-HHHHHHHHHHHHHHHHHHH CS
  CTP_transf_1 180 lvaavvvglllalvlskalalsllhllllslllslvavfGDLveSglKRafgiKDsGkliPGhGGilDRlDsllfaapvvylll 263
                   l++a+v++ ++   +  +   +++ ll+ s++++l++v+GDL+eS++KR++giKDsG+liPGhGGilDR+Dsl++a+pv++ ll
    CTQ26523.1 197 LLTAAVISWAYGVWAHLD--VTPTVLLVCSVVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLL 278
                   ********9999888886..999*********************************************************9887 PP

>> CarS-like  CDP-archaeol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   1.3       3.3   1.5e+04     131     145 ..      13      27 ..       7      40 .. 0.41
   2 ?   -0.1   0.1      0.18   8.3e+02       3      24 ..      63      84 ..      53     105 .. 0.79
   3 ?   14.3   0.4   6.7e-06      0.03      44     133 ..     184     271 ..     153     285 .] 0.76

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 3.3
   CarS-like 131 galllaypvkllpie 145
                   +++a  + l p+ 
  CTQ26523.1  13 IPIVIAALFLLPPMG 27 
                 444444332222222 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.18
   CarS-like  3 dlilksiylllpayvanasavl 24
                 l+l+++ +llp y  ++   +
  CTQ26523.1 63 GLLLAAMLFLLPEYHYDVHQPM 84
                4788888899998876665554 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 6.7e-06
   CarS-like  44 iGdGvtyrGtvaGvlvGvlvgliqglleklsilaldssgsvlefvilalllafGallGdavGsfikrrlki.erGkpal....ildqldfvlgal 133
                 +  G+t++G+ +G+l+  +++   g+  +     ld++ +v   ++ +++ a+ ++lGd++ s+ kr  +i + G+ ++    ild++d + +a+
  CTQ26523.1 184 VSPGKTWQGFFGGLLTAAVISWAYGVWAH-----LDVTPTV--LLVCSVVAALASVLGDLTESMFKREAGIkDSGHLIPghggILDRIDSLTAAV 271
                 5679************9999999999844.....4444454..46778888999**************998345665544455788887777665 PP

>> Phage_holin_3_1  Phage holin family (Lysis protein S)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2     0.061   2.8e+02      24      57 ..      29      67 ..      20      79 .. 0.68
   2 ?    7.1   1.2    0.0017       7.5      12      73 ..      48     111 ..      39     118 .. 0.76
   3 ?    4.4   0.0     0.011        49      17      66 ..     190     240 ..     186     258 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.061
  Phage_holin_3_1 24 avlAlviallrviYdgk.....swkkvlleallCgllal 57
                     a++ lv+++l ++  g+     s ++++  a+lCgll  
       CTQ26523.1 29 AIVTLVVCMLAAWEWGQlsgftSTSQRVWLAVLCGLLLA 67
                     5555666665555444445567777888889****9854 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0017
  Phage_holin_3_1  12 awlqsaspqiiaavlAlviallrviYdgk..swkkvlleallCgllalavrsllellglpasla 73 
                       + +++++   a++  l++a++ ++  +    +++ ++e+ l +++a+ ++ ll +l+ pas+a
       CTQ26523.1  48 GFTSTSQRVWLAVLCGLLLAAMLFLLPEYhyDVHQPMVEGSLWASFAWWIVALLLVLSYPASAA 111
                      455555555566666666666666666655689999***********************99987 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.011
  Phage_holin_3_1  17 aspqiiaavlAlviallrviYdgk.swkkvlleallCgllalavrsllell 66 
                      ++  +++ ++A+vi++  +++       +vll + + ++la ++ +l e +
       CTQ26523.1 190 WQGFFGGLLTAAVISWAYGVWAHLdVTPTVLLVCSVVAALASVLGDLTESM 240
                      4555889999***********999566778888999999999888877765 PP

>> DUF4199  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   1.2      0.01        45       3      44 ..      59     103 ..      57     116 .. 0.71
   2 ?   11.4   4.7   6.9e-05      0.31       4      86 ..     121     209 ..     121     215 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.01
     DUF4199   3 Glilglvwilifll.ilyllglhqi.lstgpllglla.llllllv 44 
                 +++ gl+++++ +l   y ++ hq   +++ + ++ + +++lllv
  CTQ26523.1  59 AVLCGLLLAAMLFLlPEYHYDVHQPmVEGSLWASFAWwIVALLLV 103
                 678999999999999999999984446666888888854444432 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 6.9e-05
     DUF4199   4 lilglvwilifll.ilyllglh.qilstg..pllgllallllllvpflvylalkkyrkkn.....lgGfisfgqafgfgflislvagllsav 86 
                 li+g+++i+ f+  +l+l  +h  + +++   +l ++++l + +   ++y++ k + k++     + G    +q+f  g+l+++v++  ++v
  CTQ26523.1 121 LIFGILTIVPFFWgMLALRAWHyADNHYSgaLWLLYVMILVWGA-DSGAYMFGKMFGKHKlapkvSPG--KTWQGFFGGLLTAAVISWAYGV 209
                 79*******************85443333444444444444444.56788888888666623332456..6788888888888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       832  (0.0464053); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2000.32
//
Query:       CTQ26524.1  [L=455]
Description: zinc metallopeptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-87  290.8   0.6      9e-87  290.5   0.6    1.1  1  Peptidase_M50   Peptidase family M50
      4e-15   55.4   4.3    1.3e-11   44.1   0.2    2.7  2  PDZ_6           PDZ domain
    3.1e-12   46.6   0.2    1.2e-09   38.4   0.0    2.4  2  PDZ_2           PDZ domain
      5e-12   46.0   0.9    3.3e-09   37.0   0.0    2.3  2  PDZ             PDZ domain
    0.00022   21.1   0.2      0.013   15.4   0.0    2.6  2  Tricorn_PDZ     Tricorn protease PDZ domain
  ------ inclusion threshold ------
      0.042   13.5   0.1       0.12   12.1   0.0    1.7  1  DUF3394         Domain of unknown function (DUF3394)


Domain annotation for each model (and alignments):
>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.5   0.6     3e-90     9e-87       1     250 []      15     443 ..      15     443 .. 0.91

  Alignments for each domain:
  == domain 1  score: 290.5 bits;  conditional E-value: 3e-90
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50   1 afilllgilvvvHElGHflvAklcgvkveefsigfGpkllsfk.kgeteYaiallpLGGyVkmageepeeelseeeakaflkkspwqrllivlAGp 95 
                    afi++lg+l++vHE+GHf+vA++cg++ve+fsigfG+ l+++  k++te+ ial+pLGGyVkm +e+ e+  +e ++ af++k++ qr+++++AGp
     CTQ26524.1  15 AFIIALGVLITVHEFGHFWVARRCGIRVERFSIGFGKALWRRMdKQGTEFVIALIPLGGYVKMLDERVEAVAPEMRHYAFNNKTVGQRAAVIAAGP 110
                    69***************************************999**************************************************** PP

                    XXXXXXXXXXXXX................................................................................... CS
                    xxxxxxxxxxxxx................................................................................... RF
  Peptidase_M50  96 lanfilailvfvv................................................................................... 108
                    +anfi+ai+++++                                                                                   
     CTQ26524.1 111 IANFIFAIFAYWLvfiigvpgvrpvvgeitpnsvaaqaqiakgtelkaidgietpdwdavrlqlvakignpqtivtvapfgtnqrqdkivdlrhws 206
                    **********************************************************************************99999999999988 PP

                    .......................................................................................-EEECECTT CS
                    .......................................................................................xxxxxxxxx RF
  Peptidase_M50 109 .......................................................................................pkkskesee 117
                                                                                                           p   k ++ 
     CTQ26524.1 207 fepdkqdpvtslgiqprsaqidtvlaevqagsaaqkaglqagdrivkvdgqpltqwmtfvnlvrdnpgkalaleierqgsalpltltP-DAKTVKG 301
                    8888887777777777777777777777777777777777777777777777777777777777777777777777777777666654.2233667 PP

                    TSCEE-SEEEC-.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 118 ekrgviGvspkp.........vkkegllealkegvektlkvvvltvkalgklitgklslktlggpisiaqlaseaaeaglssflqllalisvnLgi 204
                    + +g+ Gv pk+         v+++g+++a++e+++kt++++ ltv++lgklitg+++l++l+gpisiaq a+ +ae gl+++l +lalisvnLgi
     CTQ26524.1 302 KAEGFAGVVPKViplpeeyktVRQYGPFAAIAEATDKTWQLMSLTVRMLGKLITGDVKLNNLSGPISIAQGAGMSAEFGLIYYLMFLALISVNLGI 397
                    777777777777************************************************************************************ PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M50 205 lNLlPipvLDGghllfalleairrkplserkeevanlvglalllll 250
                    +NL+P+pvLDGghllf ++e++++ p+ser++++ +++g +ll+ll
     CTQ26524.1 398 INLFPLPVLDGGHLLFLAIEKLKGGPVSERVQDFSYRIGSILLVLL 443
                    *******************************************986 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.5   4.9e-05      0.15       1      54 [.     135     187 ..     135     188 .. 0.81
   2 !   44.1   0.2   4.4e-15   1.3e-11       4      56 .]     233     283 ..     230     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.9e-05
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvvlvv 54 
                 vV ++ p+s+A++A +  G  + +++G++++ ++ + ++   +  ++ ++ ++v
  CTQ26524.1 135 VVGEITPNSVAAQAQIAKGTELKAIDGIETPDWDAVRLQLVAK-IGNPQTIVTV 187
                 68999******************************98544433.5555555555 PP

  == domain 2  score: 44.1 bits;  conditional E-value: 4.4e-15
       PDZ_6   4 aVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsagesvvlvvrr 56 
                 +V++gs A +AGl++GD+i++v+Gqp+  ++   +++l+r ++g+++ l+++r
  CTQ26524.1 233 EVQAGSAAQKAGLQAGDRIVKVDGQPL--TQWMTFVNLVRDNPGKALALEIER 283
                 79*************************..666679999999999999999987 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1     0.005        15      17      52 ..     135     170 ..     128     196 .. 0.81
   2 !   38.4   0.0   3.9e-13   1.2e-09       3      80 ..     218     292 ..     216     293 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.005
                 EEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHH CS
       PDZ_2  17 lvvsVkeggPaakaglkagDvilkvdgkkvksledl 52 
                 +v ++++++ aa+a++++g ++ ++dg +  + + +
  CTQ26524.1 135 VVGEITPNSVAAQAQIAKGTELKAIDGIETPDWDAV 170
                 67889**********************988555544 PP

  == domain 2  score: 38.4 bits;  conditional E-value: 3.9e-13
                 ..XX------..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEE CS
       PDZ_2   3 lGvsvsdeedtggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvev 80 
                 lG++ ++ +     + ++V+ g+ a+kagl+agD+i+kvdg+++++  ++ + l +  pG+ + l+++R+g  + +++
  CTQ26524.1 218 LGIQPRSAQI--DTVLAEVQAGSAAQKAGLQAGDRIVKVDGQPLTQWMTFVN-LVRDNPGKALALEIERQGSALPLTL 292
                 8999999998..88889***************************66666665.56789*************9888765 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0018       5.4      29      69 ..     135     175 ..     128     187 .. 0.81
   2 !   37.0   0.0   1.1e-12   3.3e-09      11      81 ..     217     281 ..     208     282 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0018
                 EEEEECTT.SHHHHHTSSTTEEEEEETTEETTTSHHHHHHHH CS
         PDZ  29 fvsevlpg.gaaeadglkvGDkIlsvNgvdvenvsheeavqa 69 
                 +v e+ p+  aa+a+ + +G ++ +++g  + ++   + +++
  CTQ26524.1 135 VVGEITPNsVAAQAQ-IAKGTELKAIDGIETPDWDAVRLQLV 175
                 899*****7788888.************99999976666554 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 1.1e-12
                 ESSEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ  11 glGfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                 +lG++ ++ +        + +ev++g+aa+++gl++GD+I++v+g++++++  + + ++  ++++ ++L+i
  CTQ26524.1 217 SLGIQPRSAQI-----DTVLAEVQAGSAAQKAGLQAGDRIVKVDGQPLTQW-MTFVNLVRDNPGKALALEI 281
                 56666666555.....7899*******************************.3444444445555888887 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.04   1.2e+02      39      83 ..     149     194 ..     145     199 .. 0.76
   2 !   15.4   0.0   4.4e-06     0.013      28      80 ..     235     285 ..     229     289 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.04
                  --.TT-EEEEETTEE-BTTB-HHHHHHTTTT.SEEEEEEE-STT-E CS
  Tricorn_PDZ  39 nvreGdlilavdgepvskekgiaelLvgkag.keveLtvkrkdgka 83 
                  ++++G  ++a+dg ++   + +   Lv k g  ++ +tv++ + ++
   CTQ26524.1 149 QIAKGTELKAIDGIETPDWDAVRLQLVAKIGnPQTIVTVAPFGTNQ 194
                  5789************999999988888866245666776655555 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 4.4e-06
                  S-B-GGGGGS---.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-ST CS
  Tricorn_PDZ  28 earSPLaepGvnvreGdlilavdgepvskekgiaelLvgkagkeveLtvkrkd 80 
                  +a S+ ++ G++  +Gd i++vdg+p+++ + + +l  ++ gk+  L+++r++
   CTQ26524.1 235 QAGSAAQKAGLQ--AGDRIVKVDGQPLTQWMTFVNLVRDNPGKALALEIERQG 285
                  567888999999..8*********************************99976 PP

>> DUF3394  Domain of unknown function (DUF3394)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.9e-05      0.12     101     149 ..     204     255 ..     182     269 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.9e-05
     DUF3394 101 e...eatgeerLeaaGltlleedgkvlvdevefgspaekagldfdfeiveve 149
                     e + ++ ++++G++ ++ + ++++ ev+ gs a+kagl+ +++iv+v 
  CTQ26524.1 204 HwsfEPDKQDPVTSLGIQPRSAQIDTVLAEVQAGSAAQKAGLQAGDRIVKVD 255
                 34456778888999**********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3401.18
//
Query:       CTQ26525.1  [L=809]
Description: outer membrane protein assembly factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.1e-101  339.7  15.7   4.7e-101  338.5  15.7    1.6  1  Bac_surface_Ag  Surface antigen
    1.8e-63  211.1   7.6    2.2e-15   57.0   0.1    5.3  5  POTRA           Surface antigen variable number repeat
    1.2e-06   28.8   0.1        0.1   12.9   0.0    4.4  5  POTRA_1         POTRA domain, FtsQ-type
    2.8e-06   27.1   0.9      0.053   13.4   0.0    5.3  6  POTRA_2         POTRA domain, ShlB-type


Domain annotation for each model (and alignments):
>> Bac_surface_Ag  Surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.5  15.7    1e-104  4.7e-101       1     324 []     448     809 .]     448     809 .] 0.97

  Alignments for each domain:
  == domain 1  score: 338.5 bits;  conditional E-value: 1e-104
                     STSSSS-EEEEEEEESSSEEEEEEEEEESTSSTTS-EEEEEEEEEE..GGGTBS.S-EEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEES---B CS
  Bac_surface_Ag   1 NllGtGqslslsaslgsyeqslnlsftePyflgdrvslglslfare..sdsdesdsyrtksvgfsvslgrpltenyslslglsvqknkilkdsss 93 
                     N+lGtG+ +++++++++y++  +ls t+Pyf+ d+vslg+ +f+++   ++ + ++y++ks+g++++lg+p++e+++l +g+++++n++++++++
      CTQ26525.1 448 NWLGTGYAVGINGTKNDYQTYTELSVTNPYFTVDGVSLGGRVFYNDfdANDADLSDYTNKSYGTDITLGFPVNEYNTLRAGVGYVHNSLSNMQPQ 542
                     9*********************************************996666667**************************************** PP

                     HHHHHHHH........SCS--EEEEEEEEEEEEEEEEEESSSSS-SSEEEEEEEEEEE-..TTSSS-EEEEEEEEEEEEESSTTSSSEEEEEEEE CS
  Bac_surface_Ag  94 ennrnvss........asklqtgksltsslslslsydtrddalfPtrGvllklrleftgpllggdvsylkldakasyyvpltkekdlvlaarval 180
                      +++++ +        +++++++  ++++++++++y+++d+++fPt+G++++l+ ++t+  +g+d++y+k + ++++yvp+ +++++v++ r+++
      CTQ26525.1 543 VAMWRYLNsmgqypdnTNDRNSFSANDFTFNYGWTYNKLDRGFFPTEGSRVNLNGKVTI--PGSDNEYYKATLDTATYVPIDNDHQWVVLGRTRF 635
                     *******9888876655******************************************..********************************** PP

                     EEEEESSSS-.--GGG-B-BSSTTSSTEE-TT-BS-EEE...........................EEEE--BSEEEEEEEEEEEE-SSS-..GG CS
  Bac_surface_Ag 181 gyisgygtkdelpfyerFyaGGsnsvRGfesgglgprde...........................sgdalGGdsyavaslElrfplpflk..kq 246
                     gy++g g+k+ +pfye+FyaGGs++vRGf+s+++gp++                            s+da+GG+++avaslEl++p+pf++  + 
      CTQ26525.1 636 GYGDGIGGKE-MPFYENFYAGGSSTVRGFQSNTIGPKAVyfpassrhddddsydneckstesapckSDDAVGGNAMAVASLELITPTPFISdkYA 729
                     *********9.********************************************************************************9888 PP

                     TTEEEEEEEEEEEEE-TT--TTTTTTS--TT..TS-EEEEEEEEEEEETTEEEEEEEEEEEE-STT--EESEEEEECEEE CS
  Bac_surface_Ag 247 nsvrlalFfDaGnvwdkegqspsssrsasst..aeirasvGvgLrwqsPlGPlrfdyAiplkkedgdktqrFqFgiGttF 324
                     nsvr+++F+D+G+vwd+ ++s+ ++     +  ++ir+s+G++++w+sPlGPl+f+yA p+kk+dgdk ++FqF+iG+t+
      CTQ26525.1 730 NSVRTSVFWDMGTVWDTHWDSSAYAGYPDYSdpSNIRMSAGIAVQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 809
                     89*********************9998777799*********************************************98 PP

>> POTRA  Surface antigen variable number repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   8.2e-06     0.037       2      79 ..      25      90 ..      24      91 .. 0.87
   2 !   42.5   0.1   1.6e-14   7.4e-11       1      80 []      92     172 ..      92     172 .. 0.94
   3 !   57.0   0.1     5e-19   2.2e-15       2      80 .]     176     263 ..     175     263 .. 0.96
   4 !   47.5   0.1   4.4e-16     2e-12       1      80 []     266     344 ..     266     344 .. 0.95
   5 !   50.3   0.1   5.9e-17   2.6e-13       1      80 []     347     421 ..     347     421 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.2e-06
                EEEEEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EEEEEEHSSTTSEEEEEEEEEEEE CS
       POTRA  2 kikkinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasVqvelpeddedknrvdltinvdE 79
                ++k+i+feG ++++    +  +++++gd+ + ++++++++    ++ ++G f+ +V+v      +  +   l + v+E
  CTQ26525.1 25 VVKDIHFEGLQRVAVGAALLSMPVRPGDTVTDDDISNTIR----ALFATGNFE-DVRVLR----DGDT---LLVQVKE 90
                79*******99***99999999******************....*********.**8833....3333...7777777 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 1.6e-14
                 EEEEEEEEES.SSS-HHHHHTTT...SSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EE.EEEEHSSTTSEEEEEEEEEEEE- CS
       POTRA   1 vkikkinfeGnkktkdeelrrel...elkegdvynpekleadkealksryanlGyfdasV.qvelpeddedknrvdltinvdEg 80 
                 ++i++i+f+Gnk +kd+ l++ l   +++ g+ +++ ++ + ++ l+++y++ G ++asV  v +   + ++nrvdl+++++Eg
  CTQ26525.1  92 PTIASITFSGNKSVKDDMLKQNLeasGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVkAVVT---PLPRNRVDLKLVFQEG 172
                 689********************88778********************************85555...8*************98 PP

  == domain 3  score: 57.0 bits;  conditional E-value: 5e-19
                 EEEEEEEES.SSS-HHHHHTTTSSSTT.........SBHCHHHHHHHHHHHHHHHHCTT-EE.EE...EEEEHSSTTSEEEEEEEEEEEE- CS
       POTRA   2 kikkinfeGnkktkdeelrrelelkeg.........dvynpekleadkealksryanlGyfdasV...qvelpeddedknrvdltinvdEg 80 
                 ki++in++Gn++++++el + ++l+           ++y ++kl  d+e+l+s+y+++Gy+ +++   qv+l   ++dk+ +++t+n++Eg
  CTQ26525.1 176 KIQQINIVGNHAFSTDELISHFQLRDEvpwwnvvgdRKYQKQKLAGDLETLRSYYLDRGYARFNIdstQVSL---TPDKKGIYITVNITEG 263
                 89**********************999999999999************************************...***************8 PP

  == domain 4  score: 47.5 bits;  conditional E-value: 4.4e-16
                 EEEEEEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EE..EEEEHSSTTSEEEEEEEEEEEE- CS
       POTRA   1 vkikkinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasV..qvelpeddedknrvdltinvdEg 80 
                 +k++ ++++Gn +    e++++ ++ +g++yn +k+++ ++++k+++++ Gy+ ++V  q+e+   ++  ++v+l +nvd g
  CTQ26525.1 266 YKFSGVQVTGNLAGHSAEIEALTKVEPGELYNGAKVTKMENDIKKLLGRYGYAYPRVqsQPEI---NDSDKTVKLHVNVDAG 344
                 78999****************************************************887777...9999999******976 PP

  == domain 5  score: 50.3 bits;  conditional E-value: 5.9e-17
                 EEEEEEEEES.SSS-HHHHHTTTSSSTTSBHCHHHHHHHHHHHHHHHHCTT-EE.EEEEEEHSSTTSEEEEEEEEEEEE- CS
       POTRA   1 vkikkinfeGnkktkdeelrrelelkegdvynpekleadkealksryanlGyfdasVqvelpeddedknrvdltinvdEg 80 
                 ++++ki+feGn   kd +lrre++  eg ++ ++ +++ k+    r+++lG+f+ +V+++++  ++ +++vd++++v+E+
  CTQ26525.1 347 YYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKD----RLNRLGFFE-TVDTDTQRVPGSPDQVDVVYKVKER 421
                 89*********9999999***********************....*********.99665534456666666******96 PP

>> POTRA_1  POTRA domain, FtsQ-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.1   4.9e+03      60      69 .]      82      91 ..      81      91 .. 0.93
   2 !    5.4   0.0     0.005        22       3      45 ..      94     139 ..      93     148 .. 0.82
   3 !   12.9   0.0   2.3e-05       0.1       2      34 ..     176     208 ..     175     227 .. 0.90
   4 !    4.6   0.0    0.0088        39       3      46 ..     268     311 ..     266     314 .. 0.92
   5 ?   -2.8   0.0       1.8     8e+03       3      23 ..     349     369 ..     349     379 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
                TEEEEEEEC- CS
     POTRA_1 60 ntleitveEr 69
                +tl ++v+Er
  CTQ26525.1 82 DTLLVQVKER 91
                79*******9 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.005
                 X-EEEEES-SS--HHHHHHHHHTTS...TT-GGGS-HHHHHHHHHH CS
     POTRA_1   3 ikqvevsGnkhlsseeiikalgiek...gtslfsldleaieqrlek 45 
                 i+++++sGnk ++++ +++ l+ ++   g+sl +  +++ie+ le 
  CTQ26525.1  94 IASITFSGNKSVKDDMLKQNLEASGvrvGESLDRTTIADIEKGLED 139
                 789**************98665555555999999999999988875 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 2.3e-05
                 XX-EEEEES-SS--HHHHHHHHHTTSTT-GGGS CS
     POTRA_1   2 pikqvevsGnkhlsseeiikalgiekgtslfsl 34 
                 +i+q++++Gn+  s++e+i   ++ ++ +++ +
  CTQ26525.1 176 KIQQINIVGNHAFSTDELISHFQLRDEVPWWNV 208
                 79************************9999976 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.0088
                 X-EEEEES-SS--HHHHHHHHHTTSTT-GGGS-HHHHHHHHHH- CS
     POTRA_1   3 ikqvevsGnkhlsseeiikalgiekgtslfsldleaieqrlekl 46 
                  + v+v+Gn    s+ei++  ++e+g+ + + ++ ++e+ ++kl
  CTQ26525.1 268 FSGVQVTGNLAGHSAEIEALTKVEPGELYNGAKVTKMENDIKKL 311
                 5789***********************************99994 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 1.8
                 X-EEEEES-SS--HHHHHHHH CS
     POTRA_1   3 ikqvevsGnkhlsseeiikal 23 
                 +++++++Gn + +++ +++++
  CTQ26525.1 349 VRKIRFEGNDTSKDAVLRREM 369
                 689999**9988877777665 PP

>> POTRA_2  POTRA domain, ShlB-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.47   2.1e+03       1      42 [.      24      65 ..      24      67 .. 0.70
   2 ?    1.5   0.0     0.059   2.7e+02       3      51 ..      94     145 ..      93     167 .. 0.82
   3 ?    1.1   0.0     0.077   3.4e+02       2      20 ..     176     194 ..     175     200 .. 0.86
   4 ?   -2.0   0.0      0.72   3.2e+03      41      53 ..     224     236 ..     211     253 .. 0.82
   5 !   13.4   0.0   1.2e-05     0.053       4      73 ..     269     339 ..     266     341 .. 0.93
   6 ?    3.4   0.0     0.015        67       3      36 ..     349     382 ..     348     392 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.47
                EE.SEEEEESGCCSSHCCHHHHHCCCSSSEEEHHHHHHHHHH CS
     POTRA_2  1 fpikkielegntllsleeleallqpylgkclgladlnqlake 42
                f +k+i++eg ++++  ++   +    g  ++  d+++ +++
  CTQ26525.1 24 FVVKDIHFEGLQRVAVGAALLSMPVRPGDTVTDDDISNTIRA 65
                678999999988877665555555566777777777777766 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.059
                 .SEEEEESGCCSSHCCHHHHHCCC...SSSEEEHHHHHHHHHHHHHHHHHTT CS
     POTRA_2   3 ikkielegntllsleeleallqpy...lgkclgladlnqlakeltnayiekG 51 
                 i +i + gn++++++ l++ l++    +g+ l+ + +  + k l+++y++ G
  CTQ26525.1  94 IASITFSGNKSVKDDMLKQNLEASgvrVGESLDRTTIADIEKGLEDFYYSVG 145
                 7789999999999998888777643348999999999999999999999877 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.077
                 E.SEEEEESGCCSSHCCHH CS
     POTRA_2   2 pikkielegntllsleele 20 
                 +i++i++ gn+++s++el 
  CTQ26525.1 176 KIQQINIVGNHAFSTDELI 194
                 599***********99985 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.72
                 HHHHHHHHHTT-T CS
     POTRA_2  41 keltnayiekGYv 53 
                   l   y+++GY 
  CTQ26525.1 224 ETLRSYYLDRGYA 236
                 567789*****95 PP

  == domain 5  score: 13.4 bits;  conditional E-value: 1.2e-05
                 SEEEEESGCCSSHCCHHHHHCCCSSSEEEHHHHHHHHHHHHHHHHHTT-TT-EEEEEEC.CEETTEEEEEE CS
     POTRA_2   4 kkielegntllsleeleallqpylgkclgladlnqlakeltnayiekGYvtsrvllppq.dlesGtlklkV 73 
                 ++++++gn + + +e+eal++   g+  + a ++++ +++ +++   GY   rv+ +p+ + ++ t+kl V
  CTQ26525.1 269 SGVQVTGNLAGHSAEIEALTKVEPGELYNGAKVTKMENDIKKLLGRYGYAYPRVQSQPEiNDSDKTVKLHV 339
                 79******************************************************5555999999*9988 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.015
                 .SEEEEESGCCSSHCCHHHHHCCCSSSEEEHHHH CS
     POTRA_2   3 ikkielegntllsleeleallqpylgkclgladl 36 
                 ++ki++egn+  +++ l++ +++++g  lg+  +
  CTQ26525.1 349 VRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLV 382
                 789***********************99887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.37
# Mc/sec: 6641.84
//
Query:       CTQ26526.1  [L=161]
Description: periplasmic chaperone [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-25   88.0  12.7    7.6e-25   87.9  12.7    1.0  1  OmpH             Outer membrane protein (OmpH-like)
  ------ inclusion threshold ------
      0.064   13.1   1.8       0.09   12.6   1.4    1.4  1  EC042_2821       EC042_2821-lke REase
      0.064   13.6   3.9      0.092   13.1   3.9    1.2  1  Histone          Core histone H2A/H2B/H3/H4
       0.19   12.6   5.1       0.32   11.9   5.1    1.4  1  Cytochrom_C_2    Cytochrome C'
       0.24   11.1   3.4       0.28   10.9   3.4    1.0  1  DUF2855          Protein of unknown function (DUF2855)
       0.63   10.4   6.3          2    8.8   1.0    2.7  3  Siah-Interact_N  Siah interacting protein, N terminal
        2.5    8.6   8.6       0.35   11.3   1.0    2.3  2  H-kinase_dim     Signal transducing histidine kinase, homodim


Domain annotation for each model (and alignments):
>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9  12.7     3e-28   7.6e-25       1     137 [.      23     159 ..      23     160 .. 0.93

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 3e-28
                 TEEEE-HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH   1 kiavvdvqkileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkin 99 
                 kia v++++++++  +   + + le++fk ++ el+++e +lq+++++lq  ++ +e+++ e+++++++q + qk+q+ +q+ +++++e++ +++ +i+
  CTQ26526.1  23 KIALVNMNSLFQQVAQKTGVSNTLENEFKGRASELQRMEGDLQSKMQRLQSMKPGAERTKLEKDVMAQRQTFSQKAQAFEQDRARRSNEERGKLVTRIQ 121
                 8************************************************965555459999999**********555555******************* PP

                 HHHHHHHHHTT-SEEEE.GGG-S--.-GGGB-HHHHHHH CS
        OmpH 100 kaikevakekgydlvldsrgavlya.ddklDiTdeVlkk 137
                 +a++ vak++ +dlv+d ++av y+ +d +DiT++Vlk+
  CTQ26526.1 122 TAVQSVAKDQSIDLVVD-ANAVAYNsSDVKDITADVLKQ 159
                 *****************.8999999899*********98 PP

>> EC042_2821  EC042_2821-lke REase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.4   3.5e-05      0.09      13      87 ..      74     145 ..      63     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.5e-05
  EC042_2821  13 LtLsvklpalpedeikakyskeiaekllkfaneikelieetesdkfaigidvnlqivKkkekadlvvaidkeada 87 
                 +  ++++++l+ d++  +  ++ ++k + f+++ ++ ++e e+ k++++i++ +q+v k++  dlvv  +  a +
  CTQ26526.1  74 MKPGAERTKLEKDVM--AQRQTFSQKAQAFEQDRARRSNE-ERGKLVTRIQTAVQSVAKDQSIDLVVDANAVAYN 145
                 666777777777775..56788999999************.*************************988665544 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.9   3.6e-05     0.092      18     105 ..      70     158 ..      53     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-05
                 XXXXXXXXHT.TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHH CS
     Histone  18 ekkvsakker.kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfe 105
                 + +  +  ++ ++ +k  +++++++ ++ +a ++ r++++++++    + ++  v+ + k+++ dl ++a av +  + ++++++++++
  CTQ26526.1  70 RLQSMKPGAErTKLEKDVMAQRQTFSQKAQAFEQDRARRSNEERGKLVTRIQTAVQSVAKDQSIDLVVDANAVAYNSSDVKDITADVLK 158
                 33333333337999************************************************************999999999988875 PP

>> Cytochrom_C_2  Cytochrome C'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   5.1   0.00012      0.32      13     111 ..      29     129 ..      14     130 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
                    HHHHHHHHHHHHTTSST--HHHHHHHHHHHHHHHCSGG.GGC-TTGSS..SSS--B-THHHHTHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHHHH CS
  Cytochrom_C_2  13 igknmgklgamlkgeapydaeavaaaaealaalakklp.alFpegsdk..gektkakpeiWedkekfkakaaaleeaaaeLaaaakagdlaalkaa 105
                    +++ ++++++ + g  +  +++++ +a +l+++  +l+ ++ + +s k  +e+tk ++ +  ++++f++ka+a+e++ a+  + ++ +   ++++a
     CTQ26526.1  29 MNSLFQQVAQKT-GVSNTLENEFKGRASELQRMEGDLQsKMQRLQSMKpgAERTKLEKDVMAQRQTFSQKAQAFEQDRARRSNEERGKLVTRIQTA 123
                    555555555555.333335799***************9666666676688889************************9998888888999999999 PP

                    HHHHHH CS
  Cytochrom_C_2 106 fgkvgk 111
                    ++ v+k
     CTQ26526.1 124 VQSVAK 129
                    998876 PP

>> DUF2855  Protein of unknown function (DUF2855)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.4   0.00011      0.28     177     305 ..      12     131 ..       6     153 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
     DUF2855 177 lvglTSaknrafveslglydkvvsYddlesleaakkvvivDfagrdelleklhealkdkgklvlsvavGsthkvksseelqeakaaaaalakpvqffap 275
                 l  +TSa+ ++   +++l + +  ++++++++ +++++  +f gr++ l+++   l++k + ++s++ G++ ++ ++    + +a++++++++ q f +
  CTQ26526.1  12 LAMVTSAQAAD---KIALVNMNSLFQQVAQKTGVSNTLENEFKGRASELQRMEGDLQSKMQRLQSMKPGAERTKLEK----DVMAQRQTFSQKAQAFEQ 103
                 55677777777...9999999999************************************************96554....556777888888999988 PP

     DUF2855 276 evidkrieelgaeeyferlaaawkrfleea 305
                 ++ ++ +ee g+  + +r+++a+++++++ 
  CTQ26526.1 104 DRARRSNEERGK--LVTRIQTAVQSVAKDQ 131
                 888888888775..5566667777777655 PP

>> Siah-Interact_N  Siah interacting protein, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.032        82      13      56 ..      29      73 ..      26      78 .. 0.81
   2 ?    8.8   1.0   0.00077         2      31      59 ..      78     104 ..      77     126 .. 0.81
   3 ?   -0.4   0.0      0.56   1.4e+03      32      49 ..     112     129 ..     108     154 .. 0.55

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.032
  Siah-Interact_N 13 lkkLlek.AtRkrVkdlLsaeirKleteilklkekqkakaqqksq 56
                     +++L ++ A++  V + L+ e     +e+++++  +++k+q  ++
       CTQ26526.1 29 MNSLFQQvAQKTGVSNTLENEFKGRASELQRMEGDLQSKMQRLQS 73
                     5666654388899********999999**9999999999997665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00077
  Siah-Interact_N  31 aeirKleteilklkekqkakaqqksqlle 59 
                      ae+ Kle+++++++++ ++kaq  +q  +
       CTQ26526.1  78 AERTKLEKDVMAQRQTFSQKAQAFEQ--D 104
                      6999***********99999999888..3 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.56
  Siah-Interact_N  32 eirKleteilklkekqka 49 
                      e+ Kl t i++  ++ ++
       CTQ26526.1 112 ERGKLVTRIQTAVQSVAK 129
                      677888888444433322 PP

>> H-kinase_dim  Signal transducing histidine kinase, homodimeric domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.0   0.00014      0.35      23      66 ..      28      68 ..      25      71 .. 0.80
   2 ?    1.2   1.2      0.19   4.9e+02      23      52 ..      89     124 ..      81     135 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
  H-kinase_dim 23 itkarLnqsleefrfenglkasvtelksslqnlgrisgeLQegv 66
                    ++ ++q++++ +    + ++ +e+k  +++l+r  g+LQ+++
    CTQ26526.1 28 NMNSLFQQVAQKTG---VSNTLENEFKGRASELQRMEGDLQSKM 68
                  45566777888888...566999******************986 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.19
  H-kinase_dim  23 itkarLnqsleefr......fenglkasvtelkssl 52 
                    ++  ++q+++ f+       ++++ ++vt ++ ++
    CTQ26526.1  89 AQRQTFSQKAQAFEqdrarrSNEERGKLVTRIQTAV 124
                   567778888888883333332233333333344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2044  (0.114005); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1159.47
//
Query:       CTQ26527.1  [L=341]
Description: UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-30  103.5  37.7    4.4e-10   38.9   3.6    5.6  6  Hexapep    Bacterial transferase hexapeptide (six repeats)
    2.1e-22   78.7   0.1    3.4e-22   78.0   0.1    1.4  1  LpxD       UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltra
    4.9e-12   45.4  42.6    2.9e-07   30.1   8.8    5.8  4  Hexapep_2  Hexapeptide repeat of succinyl-transferase
  ------ inclusion threshold ------
      0.042   12.0   5.3       0.27    9.3   0.2    2.2  2  DUF4954    Domain of unknown function (DUF4954)


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   3.6   9.8e-14   4.4e-10       1      36 []     109     144 ..     100     144 .. 0.97
   2 !   29.5   0.2   8.8e-11   3.9e-07       1      35 [.     145     179 ..     145     180 .. 0.96
   3 !   14.0   0.4     7e-06     0.031      18      35 ..     199     216 ..     198     217 .. 0.90
   4 !   29.6   7.8   8.6e-11   3.9e-07       1      34 [.     222     255 ..     222     257 .. 0.93
   5 !    9.3   1.0   0.00021      0.94      14      36 .]     253     275 ..     252     275 .. 0.81
   6 !    9.5   0.5   0.00019      0.84       2      26 ..     259     283 ..     258     286 .. 0.66

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 9.8e-14
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 s+++Gsnv Ig++avi ++V++Gdnv+Igag+ +g+
  CTQ26527.1 109 SAKLGSNVAIGANAVIESGVVLGDNVVIGAGCFVGK 144
                 6899*****************************986 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 8.8e-11
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 +t+IG ++ +++++++++ ++IG+n+ I + +vig
  CTQ26527.1 145 NTKIGAGSRLWANVTVYHEIEIGENCLIQSSTVIG 179
                 69********************************8 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 7e-06
                 TTEEE-TTEEEETTEEEE CS
     Hexapep  18 gnVkIGdnvkIgagvvig 35 
                 g V+IGd+v Iga+++i 
  CTQ26527.1 199 GRVIIGDRVEIGACTTID 216
                 68**************96 PP

  == domain 4  score: 29.6 bits;  conditional E-value: 8.6e-11
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34 
                 +tvIG++v+I++ ++i++nV+IGdn+ ++ gv  
  CTQ26527.1 222 DTVIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIM 255
                 69****************************9976 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.00021
                 EEEETTEEE-TTEEEETTEEEES CS
     Hexapep  14 aviggnVkIGdnvkIgagvvigg 36 
                 ++ +g  kIG+++ Ig  +vi+g
  CTQ26527.1 253 VIMAGSLKIGRYCMIGGASVING 275
                 56677789999999999999986 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.00019
                 EEEETTEEE-TTEEEETTEEE-TTE CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnv 26 
                 ++IG  ++Ig  +vi g+ +I d v
  CTQ26527.1 259 LKIGRYCMIGGASVINGHMEICDKV 283
                 6777777777777777766666655 PP

>> LpxD  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.1   7.5e-26   3.4e-22       1      69 [.      22      88 ..      22      89 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 7.5e-26
                T-EEEEEE-CCC--TTCEEEE-SCCCGGGCCC---SEEEEEHHHHCCHTTSCS.EESS-HHHHHHHHHH CS
        LpxD  1 dleItgvapleeAgpgdlsFlanpkylkqlattkAgavivppdlaealpanaalivvenPylafakllq 69
                d++Itgva++++A+ g+++F+ npky+++la+++A+av++++d+++++ ++a  +vv+nPyl++a+++q
  CTQ26527.1 22 DIVITGVASMQSAKTGQITFMVNPKYREHLAACQASAVVMTQDDLPFAHSAA--LVVRNPYLTYARMAQ 88
                789********************************************99888..*************98 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   8.8   6.6e-11   2.9e-07       4      34 .]     112     144 ..     110     144 .. 0.93
   2 !   12.9   0.2   1.6e-05     0.071       2      33 ..     146     179 ..     142     180 .. 0.86
   3 ?   -1.3  15.4      0.44     2e+03       2      28 ..     201     233 ..     200     255 .. 0.82
   4 !   11.2   0.4   5.4e-05      0.24       2      26 ..     259     285 ..     258     291 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 6.6e-11
                 E-TT-EE-TT-EE..SEEE-TT-EE-TT-EE-S CS
   Hexapep_2   4 IGdnCliGanagi..GvslGdncvvgaGvvita 34 
                  G n+ iGana+i  Gv lGdn+v+gaG+++ +
  CTQ26527.1 112 LGSNVAIGANAVIesGVVLGDNVVIGAGCFVGK 144
                 699*********99***************9975 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.6e-05
                 EEE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE- CS
   Hexapep_2   2 viIGdnCliGanagi..GvslGdncvvgaGvvit 33 
                 ++IG+ + + an ++   +++G+nc +++  vi 
  CTQ26527.1 146 TKIGAGSRLWANVTVyhEIEIGENCLIQSSTVIG 179
                 789999999999998889*********9988886 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.44
                 EEE-TT-EE-TT-EE......SEEE-TT-EE-T CS
   Hexapep_2   2 viIGdnCliGanagi......GvslGdncvvga 28 
                 viIGd++ iGa  +i       + +G+++++++
  CTQ26527.1 201 VIIGDRVEIGACTTIdrgaldDTVIGNGVIIDN 233
                 9************99895555377777777765 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 5.4e-05
                 EEE-TT-EE-TT-EE.S.EEE-TT-EE CS
   Hexapep_2   2 viIGdnCliGanagi.G.vslGdncvv 26 
                 ++IG  C+iG  ++i G  +++d+++v
  CTQ26527.1 259 LKIGRYCMIGGASVInGhMEICDKVTV 285
                 69*************999******998 PP

>> DUF4954  Domain of unknown function (DUF4954)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2   6.1e-05      0.27     218     260 ..     110     154 ..      90     179 .. 0.78
   2 ?    4.8   0.9    0.0014       6.4      64     101 ..     213     250 ..     190     285 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 6.1e-05
     DUF4954 218 veiGegV.iledfiissGskikdgavi.srcfvGqavklkkqfsa 260
                  ++G++V i  +++i+sG  + d +vi   cfvG+++k++ + ++
  CTQ26527.1 110 AKLGSNVaIGANAVIESGVVLGDNVVIgAGCFVGKNTKIGAGSRL 154
                 57899994458*************999457*********987665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0014
     DUF4954  64 sglynatlinceigdnvlienvknyianYeigdeviie 101
                 +++ +  l ++ ig+ v+i+n  ++  n  igd++++ 
  CTQ26527.1 213 TTIDRGALDDTVIGNGVIIDNQCQIAHNVVIGDNTAVA 250
                 45556666666666666666666666666666666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2434.48
//
Query:       CTQ26528.1  [L=151]
Description: (3R)-hydroxymyristol acyl carrier protein dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-41  138.9   0.0    9.6e-41  138.6   0.0    1.0  1  FabA             FabA-like domain
  ------ inclusion threshold ------
      0.022   14.3   0.0      0.037   13.6   0.0    1.4  1  MaoC_dehydratas  MaoC like domain
      0.038   14.3   0.0      0.068   13.5   0.0    1.5  1  4HBT             Thioesterase superfamily
      0.083   12.1   0.0       0.16   11.2   0.0    1.5  2  PS-DH            Polyketide synthase dehydratase


Domain annotation for each model (and alignments):
>> FabA  FabA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.0   2.1e-44   9.6e-41       1     137 [.      17     141 ..      17     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 2.1e-44
                 ---TT.T---SEEEEEESTCTCTSS.EEEEEEE--TTSHHHHHSSTTS----HHHHHHHHHHHHHHHHHHCC---SCCEEE-EEEEEEECEEEE-S--- CS
        FabA   1 lpark.lllldrvleieeeggkfgkGlivaekdvtpnewfFqgHFpgdPvmPGvLgleamaQlvgfyllksggdegkgrarklvlfagvdevkfrgqvt 98 
                 lp+r+ +ll+drvl++e eg       ++a k+v++ne+fFqgHFpg+P+ PGvL+leamaQ++g++++ks g+ + g   +l++fag+de++f+++v+
  CTQ26528.1  17 LPHRYpFLLVDRVLDFE-EGRF-----LRAVKNVSVNEPFFQGHFPGKPILPGVLILEAMAQATGILAFKSVGKLEPG---ELYYFAGIDEARFKRPVV 106
                 8****************.7776.....********************************************9988888...899*************** PP

                 TT-.EEEEEEEEEEEEECCTCEEEEEEEEEETTEEEEEE CS
        FabA  99 Pgdkklvleveikkvseekrviiiadaellvdgklvyea 137
                 Pgd ++++ev+++k    +r+++ +++ +lvdgk+v+ea
  CTQ26528.1 107 PGD-QMIMEVTFEK---TRRGLTRFKGVALVDGKVVCEA 141
                 ***.**********...********************98 PP

>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   8.3e-06     0.037      73     107 ..      84     123 ..      52     137 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.3e-06
                      T.....EGGGEEEEEEEE-S--BTTCEEEEEEEEEEEEEE CS
  MaoC_dehydratas  73 n.....vvarvgeikvrFtkpVlpgdtlkvelevvgkrdv 107
                      +        + g++++rF +pV pgd++ +e++ +  r++
       CTQ26528.1  84 KlepgeLYYFAGIDEARFKRPVVPGDQMIMEVTFEKTRRG 123
                      1445556678899***************999988877665 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.5e-05     0.068       6      62 ..      63     123 ..      60     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHHHHHHTTST....TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESS CS
        4HBT   6 gGvylallDeaagaalrslggr....gilvvvvelsidflrpvrlgdeltvearvlrlgrt 62 
                 g  +l+++ +a g+++++  g+    +  +++  ++++f+rpv +gd   +e++ +++ r 
  CTQ26528.1  63 GVLILEAMAQATGILAFKSVGKlepgELYYFAGIDEARFKRPVVPGDQMIMEVTFEKTRRG 123
                 556788888888888888888899999999************************9999885 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.6e-05      0.16      28      88 ..      49     118 ..      25     130 .. 0.70
   2 ?    0.6   0.0     0.058   2.6e+02     235     289 ..      95     147 ..      78     150 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.6e-05
                 .TTTSEEETTEEB--TTHHHHHHHHHHHHTS---...........-EEEEEEEE----.B--SS.-EEEEEE CS
       PS-DH  28 pwLrDHrvdgkvvlPgagylemaleAarqltges..........kavelrdvsilkalvlpede.pvevqls 88 
                 p+ + H   gk++lPg+  le++++A   l+ +s              + + ++++++ +p d+  +ev+++
  CTQ26528.1  49 PFFQGH-FPGKPILPGVLILEAMAQATGILAFKSvgklepgelyYFAGIDEARFKRPV-VPGDQmIMEVTFE 118
                 477777.68*****************99988444455555555555566788888888.4433335555544 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.058
                 EEEEEEE-S...-BTS--EEEEEE..----SS-EEEEEEEE-SS-BEEEEEESEEEE CS
       PS-DH 235 aierlrvyrpssaageelwvharl..eeegarsivadltlvdedGrvvaeieglrlr 289
                 +i++ r+ r +  +g+++  +++   +++g +++++ + lv  dG+vv+e + ++ r
  CTQ26528.1  95 GIDEARFKR-PVVPGDQMIMEVTFekTRRGLTRFKG-VALV--DGKVVCEATMMCAR 147
                 677777874.55666777777777334444444443.3444..69999988877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1186.04
//
Query:       CTQ26529.1  [L=262]
Description: UDP-N-acetylglucosamine acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-31  107.7   0.0    5.5e-31  106.9   0.0    1.4  1  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D
    2.5e-26   90.4  24.6    1.1e-08   34.4   7.7    5.6  6  Hexapep          Bacterial transferase hexapeptide (six repea
    0.00017   21.3  15.4     0.0014   18.3   2.4    4.1  4  Hexapep_2        Hexapeptide repeat of succinyl-transferase
     0.0018   17.3   0.4       0.37    9.7   0.0    2.1  2  Fucokinase       L-fucokinase


Domain annotation for each model (and alignments):
>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.0   1.2e-34   5.5e-31       1      82 []     180     261 ..     180     261 .. 0.99

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 1.2e-34
                      BB-TTEEEETTTTEEEEE-HHHHHHTT--HHHHHHHHHHHHHHHSSSS-HHHHHHHHHHHTTTSCCHHHHHHHHHH-SS-B- CS
  Acetyltransf_11   1 DVpPfvlvagnparlrglNlvgLkRrgfseeeikalkkayrllyrsglsleealeeleeeaeespevqelldFieaskRGii 82 
                      DVpPfv+++gn+a+++g+N++gLkRrgfs+e+i+a+++ay+llyrsg++leea  e++e a+++pevq ++dF+++s+RG+i
       CTQ26529.1 180 DVPPFVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNAYKLLYRSGKTLEEAKPEIAELAAQHPEVQPFVDFFARSTRGLI 261
                      9*******************************************************************************86 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   7.7   2.5e-12   1.1e-08       1      36 []      17      52 ..      17      52 .. 0.96
   2 !   17.7   0.9   4.7e-07    0.0021       4      35 ..      38      69 ..      38      70 .. 0.94
   3 !   14.3   0.0   5.4e-06     0.024       2      35 ..      66      99 ..      53     100 .. 0.90
   4 !   33.7   0.1   4.1e-12   1.8e-08       2      36 .]     109     143 ..     109     143 .. 0.96
   5 !    9.7   0.0   0.00015      0.68      12      32 ..     137     157 ..     135     161 .. 0.88
   6 !   11.5   2.5   4.3e-05      0.19       6      35 ..     149     178 ..     144     179 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.5e-12
                TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep  1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36
                ++vIG nv+Igpf+++g+nV+IG+++++ ++vv++g
  CTQ26529.1 17 GAVIGANVHIGPFCIVGANVEIGEGTVLKSHVVVNG 52
                689*******************************86 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 4.7e-07
                EETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  4 IGsnvlIgpfaviggnVkIGdnvkIgagvvig 35
                IG+++++ + +v+ g++kIG++  I  ++ ig
  CTQ26529.1 38 IGEGTVLKSHVVVNGHTKIGRDNEIYQFASIG 69
                9************************9998886 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 5.4e-06
                EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35
                + IG+ ++  ++a     V+IGd+ +I + v+i+
  CTQ26529.1 66 ASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIH 99
                56888888999*********************97 PP

  == domain 4  score: 33.7 bits;  conditional E-value: 4.1e-12
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 t++G+++l++ +a++++++++Gd+++++++++++g
  CTQ26529.1 109 TKVGNDNLLMINAHVAHDCTLGDRCILANNATLAG 143
                 789*****************************976 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.00015
                 TTEEEETTEEE-TTEEEETTE CS
     Hexapep  12 pfaviggnVkIGdnvkIgagv 32 
                 ++a+++g+V + d+v+Ig  +
  CTQ26529.1 137 NNATLAGHVSLDDYVIIGGMT 157
                 8*****************866 PP

  == domain 6  score: 11.5 bits;  conditional E-value: 4.3e-05
                 TTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   6 snvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 + v+Ig  + ++  ++IG++v +g +++++
  CTQ26529.1 149 DYVIIGGMTAVHQFCVIGSHVMVGGCSGVA 178
                 7899999999***************99986 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   2.4   3.1e-07    0.0014       3      32 ..      19      50 ..       6      51 .. 0.91
   2 ?   -3.4   0.0       1.9   8.5e+03      18      22 ..      84      88 ..      83      89 .. 0.52
   3 !    9.0   0.1   0.00026       1.2      19      31 ..     128     140 ..     109     142 .. 0.84
   4 ?    1.3   0.5     0.066     3e+02       3      18 ..     152     169 ..     150     181 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.1e-07
                EE-TT-EE-TT-EES..EEE-TT-EE-TT-EE CS
   Hexapep_2  3 iIGdnCliGanagiG..vslGdncvvgaGvvi 32
                 IG+n+ iG+++++G  v++G++ v+ + vv+
  CTQ26529.1 19 VIGANVHIGPFCIVGanVEIGEGTVLKSHVVV 50
                6*************999******999887776 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.9
                EEE-T CS
   Hexapep_2 18 vslGd 22
                v++Gd
  CTQ26529.1 84 VEIGD 88
                45555 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00026
                 EE-TT-EE-TT-E CS
   Hexapep_2  19 slGdncvvgaGvv 31 
                 +lGd+c+++++ +
  CTQ26529.1 128 TLGDRCILANNAT 140
                 79********976 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.066
                 EE-TT-EE-TT-EES..E CS
   Hexapep_2   3 iIGdnCliGanagiG..v 18 
                 iIG  + ++ +++iG  v
  CTQ26529.1 152 IIGGMTAVHQFCVIGshV 169
                 566556666666665333 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   8.2e-05      0.37     281     345 ..       2      65 ..       1      85 [. 0.73
   2 !    5.8   0.1    0.0013       5.7     268     318 ..     110     161 ..      84     180 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 8.2e-05
  Fucokinase 281 lessvsvgegsviehsslk.gnvsigsnsivsglelesseeslelpddtilqtlslklskekeyvt 345
                 +++++ v +++++e+  +  +nv+ig  +iv g ++e +e    l+++++++++    ++++ y +
  CTQ26529.1   2 IDKTAFVHPTAIVEEGAVIgANVHIGPFCIV-GANVEIGEG-TVLKSHVVVNGHTKIGRDNEIYQF 65 
                 6788899999***9876544***********.777777644.778888888887766666665544 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0013
  Fucokinase 268 ekkkesavvinSvlessvsvgegsvie.hsslkgnvsigsnsivsgleless 318
                 + ++++ ++in+ +++++++g+++++  + +l g+vs     i+ g+   ++
  CTQ26529.1 110 KVGNDNLLMINAHVAHDCTLGDRCILAnNATLAGHVSLDDYVIIGGMTAVHQ 161
                 3348899999999999999999999874667779999888888888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1915.74
//
Query:       CTQ26530.1  [L=383]
Description: tetraacyldisaccharide-1-P synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.8e-151  503.6   0.0   3.2e-151  503.4   0.0    1.0  1  LpxB      Lipid-A-disaccharide synthetase


Domain annotation for each model (and alignments):
>> LpxB  Lipid-A-disaccharide synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.4   0.0  1.8e-155  3.2e-151       1     374 []       9     377 ..       9     377 .. 0.99

  Alignments for each domain:
  == domain 1  score: 503.4 bits;  conditional E-value: 1.8e-155
                 EEEEE-SHHHHHHHHHHHHHHHHH-TT-EEEEEE-HHHHHTT-EEEEEGGGH------------HHHHHHHHHHHHHHHHH--SEEEEES-HHHHHHHH CS
        LpxB   1 iflsagevSgdllgaelikelkeeypelefvGvggekmeaeglealaemeeisvvGlievlkkllkllkirkkvvknllkkkadlliliDapdfnlrla 99 
                 i+l+age+Sgd+lga+li++lk+  p+++fvGv+g+ m+aeg+ea++emee++v+G++evl++l++ll+ir+++++++ + ++d++++iDapdfn++l+
  CTQ26530.1   9 IALVAGETSGDILGAGLIRALKARIPNARFVGVAGPLMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTRRFGELRPDVFVGIDAPDFNITLE 107
                 89************************************************************************************************* PP

                 HHHHHTT--..EEEES--TTT--SHHHHHHHHHH-SEEEESSHHHHHHHHHTT--EEE---HHHHHS-SS--HHHHHHHHT--TTS-EEEEE--SSHHH CS
        LpxB 100 kklrkqgikkkiiyyvsPsvWawkpkrakkiakytdlllaiLPfEkefyqkkgldvryvGHplldaikkekkeakakellgidedervlallpgsRkse 198
                  +l+kqgik  +i+yvsPsvWaw++kr++ki + tdl+la+LPfEk+fy+k+++++r++GH+++da++ ++++ +a++ lgi++  r+lallpgsR++e
  CTQ26530.1 108 GNLKKQGIK--TIHYVSPSVWAWRQKRVFKIGRSTDLVLAFLPFEKAFYDKFNVPCRFIGHTMADAMPLDPDKGAARDRLGIPHSVRCLALLPGSRGAE 204
                 *********..9*************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHH-TT-EEEEEESSHHHHHHHHHHHHHH-TT---EEEES-HHHHHHH-SEEEESSTTHHHHHHHTT--EEE-----HHHHHHH CS
        LpxB 199 irrllksllkaaqqlkkqlenlkllvplvnkkyeeqileikaeenldvqllllsgealealaaadlaliksGTaaLEaalaktPmvvayrvkpltffla 297
                 +++l++++lk+aq l+ ++++l+++vplvn+k++eq+++ikae+++d+ +++l+g+a++a++a+d+al++sGTaaLE++lak+Pmvv+yr+kp+tf+la
  CTQ26530.1 205 VEMLSADFLKTAQLLRATYPDLQVVVPLVNAKRREQFERIKAETAPDMIVHMLDGQARDAMIASDAALLASGTAALECMLAKCPMVVGYRMKPFTFWLA 303
                 *************************************************************************************************** PP

                 HHHHHHS--SHHHHHHTS-SS----GGG-SHHHHHHHHHHHHTTS...HHHHHHHHHHHHHHHHT-S-HHHHHHHHH CS
        LpxB 298 krlvkikyvslvNillnreivpeliqeesdaqleaaallllleneekakkekdkekkfeellreeeckakeqaakiv 374
                 krlvk++yvsl+N+l++re+v+el+q e+++q +aaal  ll+++   k+++ ++++f++l+++++c+a+eqaa +v
  CTQ26530.1 304 KRLVKTDYVSLPNLLAGRELVKELLQDECEPQALAAALQPLLADG---KTSHEMHETFRALHQQIRCNADEQAADAV 377
                 *********************************************...*************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2932.71
//
Query:       CTQ26531.1  [L=199]
Description: ribonuclease HII, degrades RNA of DNA-RNA hybrids [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-38  131.2   0.0    4.8e-38  131.0   0.0    1.0  1  RNase_HII  Ribonuclease HII


Domain annotation for each model (and alignments):
>> RNase_HII  Ribonuclease HII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   0.0   2.7e-42   4.8e-38       1     196 [.      13     188 ..      13     190 .. 0.95

  Alignments for each domain:
  == domain 1  score: 131.0 bits;  conditional E-value: 2.7e-42
                 EEEEEE-TT-SBS-EEEEEEEECGHHHHHHHCTTGTTGTTS-HHHHHHHHHHHHSEEEEEEE-HHHHH.HHTTTS-HHHHHHHHHHHHHHHHHHTCEEC CS
   RNase_HII   1 iGiDEaGrGpvlGplvvaavavekereeelkklgvkDSKkLskqkreeLaklikkkiekrklvaeeikyaseneinlneikaaltlaviklleklgvkv 99 
                 +G+DE+GrGp++G +v aav++++++      +g++DSKkLs+++r  L+ +ik     +k+    + +a+ +ei+  +i +a++la++++++ l + +
  CTQ26531.1  13 AGVDEVGRGPLVGAVVTAAVILDPAKP----IVGLNDSKKLSEKRRLALFDEIK-----EKALCWSLGRAEPHEIDELNILHATMLAMQRAVAGLSIVP 102
                 6***********************998....79*********************.....6677777888999*************************** PP

                 CECCCE--SSHHHHHHHHHHHHCCEEEEETTGGGT-HHHHHHHHHHHHHHH.HHHHHHHHHCS.H.--TTSSTTSHHHHHHHHHHHHHS--TTB-TTSH CS
   RNase_HII 100 deilvdgvttpeslkkkleqiikikvtvekkadekyllvaaASiiAkverd.eelellkrkpg.tldkgsGyasdektrallkkgatsklpdivrlsfk 196
                 + +l+dg++ p  l+++ ++++k        +d++++ ++aASi+Akv+rd e+  l  ++p  ++++++Gy+++ + ++l ++gat+    ++r+sf 
  CTQ26531.1 103 EFVLIDGNRCPS-LPMPSQAVVK--------GDSRVAEISAASILAKVTRDaEMATLDLAFPHyGFAQHKGYPTAVHLQKLQEHGATE----HHRRSFG 188
                 *********998.**********........********************8787888889999************************....****995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1586.68
//
Query:       CTQ26532.1  [L=1160]
Description: DNA polymerase III alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.7e-104  348.3   0.0   6.4e-104  347.1   0.0    1.6  2  DNA_pol3_alpha   Bacterial DNA polymerase III alpha NTPase do
    1.4e-66  223.0   0.0    2.4e-66  222.1   0.0    1.4  1  DNA_pol3_finger  Bacterial DNA polymerase III alpha subunit f
    2.1e-38  132.3   0.0    8.3e-38  130.3   0.0    2.0  2  PHP              PHP domain
    2.5e-25   88.6   0.0    6.7e-25   87.2   0.0    1.8  1  HHH_6            Helix-hairpin-helix motif
    9.2e-09   35.2   0.1    1.9e-08   34.2   0.1    1.5  1  tRNA_anti-codon  OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> DNA_pol3_alpha  Bacterial DNA polymerase III alpha NTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.1   0.0  1.8e-107  6.4e-104       3     260 .]     292     558 ..     290     558 .. 0.98
   2 ?   -2.7   0.0         1   3.6e+03     152     225 ..     699     773 ..     680     797 .. 0.60

  Alignments for each domain:
  == domain 1  score: 347.1 bits;  conditional E-value: 1.8e-107
                     HHHHHHHHHHHHS.........TT---TTHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTT--B-S--GGGGG-HHHHHTTS----HHHHT- CS
  DNA_pol3_alpha   3 Lrklveeglkerl.........keelpeevkerlekElevIekmgfadyflivadlvkaakkkgilvGpgRGSaagslvayllgiTeidPlkydl 88 
                     L  + +egl+erl         ++e++ e+ +rl+ El+vI++mgf++yfliv+++++++k++g++vGpgRGS+agslvay+l+iT++dPl++dl
      CTQ26532.1 292 LVMKSKEGLEERLeflfpdpavRAEKRPEYDQRLDIELHVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDL 386
                     6677899999999999999998888999******************************************************************* PP

                     -HHHHS-TTS-------EEEEGGGHHHHHHHHHHHH-TTTEEEEEEEEE--HHHHHHHHHHHH-GGHHHHHHHHHTS---SS--GGGG-----SH CS
  DNA_pol3_alpha  89 lFerFlnpervsmPDiDidfekerreevidyvkekyGkenvaqiitfgtlaakaairdvgralglplkevdklaklipkelgitlekaleeekel 183
                     lFerFlnpervsmPD+D+df++e+r++vi++v+++yG++ v+qiitfgt+aaka+irdvgr+lg p+  vd+++kl+p ++g+tl+ka+e e++l
      CTQ26532.1 387 LFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQL 481
                     *********************************************************************************************** PP

                     HHHHHH-HHHHHHHHHHHTTTT-EEEEEEEEEEEEE-SS-GGGTS-EEE-TTT--EEESS-HHHHHTTT-EEEEEEE CS
  DNA_pol3_alpha 184 kelieedeevkrlvelakkleglkrntgqHaaGvvispkeltdlvPlqkaekeeevvtqfdmedledlgllKlDfLG 260
                      e++e+deevk l+++a+kleg++rn+g Ha+Gvvi+p+++td++Pl+++e+  ++vtqfd++d+e +gl+K+DfLG
      CTQ26532.1 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLG 558
                     *************************************************888889*********************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1
                     -GGHHHHHHHHHTS---.SS.--GGGG-----SHHHHHHH-HHHHHHHHHHHTTTT-EEEEEEEEEEEEE-SS-GG CS
  DNA_pol3_alpha 152 glplkevdklaklipke.lg.itlekaleeekelkelieedeevkrlvelakkleglkrntgqHaaGvvispkelt 225
                     g++l  +d l +++ k+ ++ ++ ++++ e+ + k+ i + e + ++++l++k+ g   n +  aa  ++s + l+
      CTQ26532.1 699 GYTLGGADMLRRAMGKKkPEeMAKQRSIFEDGAKKNGI-DGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773
                     56666666666666665322344444444334444444.4677778889999999988888876666666666554 PP

>> DNA_pol3_finger  Bacterial DNA polymerase III alpha subunit finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.1   0.0   6.8e-70   2.4e-66       1     166 []     561     735 ..     561     735 .. 0.96

  Alignments for each domain:
  == domain 1  score: 222.1 bits;  conditional E-value: 6.8e-70
                      HHHHHHHHHHHHHHHH---....--GGG--S--HHHHHHHHHT--TTSTT--SHHHHHHHHHH---SHHHHHHHHHHSSHHHHHTTHHHHHHHH CS
  DNA_pol3_finger   1 tltiirralklikekkgke....idleeipleDkkvykllskgdtlGvfqlesrgmrqllkrlkPktfeDlvalvaLyRpgpvqggnvddyikr 90 
                      tltii++al++i+++++k+    +d++ ipl+Dkk +++l++ +t++vfqlesrgm++l+krl+P++feD++alvaL+Rpgp+q+g+vd++i+r
       CTQ26532.1 561 TLTIINWALEMINKRREKNgegpLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654
                      79**********99998844455*********************************************************************** PP

                      HTTSS----SSH.....HHTTTTTTTTT---BHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT CS
  DNA_pol3_finger  91 kngeekveyihp.....eleeiLketygvivyQEqvmqiaqvlagfslgeAdllrramgkkkeeeleklkekfiegakeng 166
                      k+g+e+++y++      +l+++L++tyg+i+yQEqvmqiaqvl+g++lg Ad+lrramgkkk+ee++k++  f +gak+ng
       CTQ26532.1 655 KHGREEISYPDVqwqheSLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNG 735
                      *********98888888*************************************************************996 PP

>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   0.0   2.3e-41   8.3e-38       1     165 [.       8     171 ..       8     173 .. 0.97
   2 ?   -1.9   0.0      0.97   3.5e+03      73     118 ..     841     881 ..     784     921 .. 0.69

  Alignments for each domain:
  == domain 1  score: 130.3 bits;  conditional E-value: 2.3e-41
                 EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTTHHHHHHHHHHHHTTTTSEEEEEEE..................E....EHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         PHP   1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlfgyvefykaakkkykagikpiiGleayvaddsekerpshltllaknqeGyknllkllsk 99 
                 +l+vH++ys+ dg ++   lvkka++lg++a+aiTD  nl g v+fy      + agikpi+G+++ v+ d   ++ ++lt+la n++Gy+nl+ l+s+
  CTQ26532.1   8 HLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTG---HGAGIKPIVGADFHVQCDLLGDEFTELTVLAANNTGYQNLTLLISR 103
                 9*************************************************...899******************************************* PP

                 HHH...........HHHHHHS..................TTGGHHHHHHHHHHHHHHHC...T-EEEEE CS
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
         PHP 100 aylegf.yrkpridkellekhsegLivlsgclkGevfealdlieveekaeealeelakif..gdyiEin 165
                 ay +g+    p id+++l +h+egLi+lsg++kG+v+  l ++++   +e+++ +++++f  ++++E+ 
  CTQ26532.1 104 AYQRGYgALGPWIDRDWLVEHQEGLILLSGGRKGDVGVSLIRGNMPL-VEQCVAFYEEHFpdRYFLELI 171
                 ******999*****************************888999988.*******************86 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.97
                 ...........E....E.HHHHHHHHHHHHH..........HHHHHH CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         PHP  73 ekerpshltllaknqeG.yknllkllskaylegfyrkpridkellek 118
                 + e p ++++ a+n+ G +++l++l+ +  +      +++++ +lek
  CTQ26532.1 841 VGEGPIEAIIEARNNGGyFRELFDLCARTDI------KKLNRRVLEK 881
                 3466777788888888876778777777666......3444444444 PP

>> HHH_6  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   1.9e-28   6.7e-25       1      89 [.     808     897 ..     808     898 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 1.9e-28
       HHH_6   1 gvevlppdvnrSeadftveeedgairlGLaaikglgeaaaerivaeRekegpfksledlarrvds..lnkrqleaLakaGaldslglnRrq 89 
                 g+++lppd+n   ++f+v+ +dg+i++G +aikg+ge  +e+i+++R+++g f++l+dl+ r+d   ln+r+le+L+ +Ga+d lg +R++
  CTQ26532.1 808 GLKILPPDINSGLYHFHVN-DDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIkkLNRRVLEKLIMSGAFDRLGPHRAA 897
                 789***************8.8999****************************************99***********************97 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   5.3e-12   1.9e-08       2      75 ..    1000    1072 ..     995    1073 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 5.3e-12
                       EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEEC..TTSSEEEEEEEEEE CS
  tRNA_anti-codon    2 tvaGrvtsisdrsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrr..pggelelkveeiel 75  
                       ++a+rv+ +  + g+++   +l+D++gr++v+lf ++ +k+++ l+++ ++ v+G+v+++   gg l +++ e+ +
       CTQ26532.1 1000 VIAARVMVT--KRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDdfSGG-LKMTAREVMD 1072
                       477777777..************************************************988888.9999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 7862.74
//
Query:       CTQ26533.1  [L=319]
Description: acetyl-CoA carboxylase, carboxytransferase, alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-62  208.0   0.1    7.8e-62  207.4   0.1    1.3  1  ACCA            Acetyl co-enzyme A carboxylase carboxyltransf
    1.5e-17   63.5   0.1    1.7e-17   63.2   0.1    1.1  1  Carboxyl_trans  Carboxyl transferase domain
    0.00036   20.1   0.0    0.00052   19.6   0.0    1.2  1  MdcE            Malonate decarboxylase gamma subunit (MdcE)
  ------ inclusion threshold ------
      0.065   13.3   0.2       0.14   12.3   0.2    1.5  1  Med9            RNA polymerase II transcription mediator comp


Domain annotation for each model (and alignments):
>> ACCA  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.4   0.1   1.7e-65   7.8e-62       1     144 []       5     151 ..       5     151 .. 0.96

  Alignments for each domain:
  == domain 1  score: 207.4 bits;  conditional E-value: 1.7e-65
        ACCA   1 lldfekpiaeleekieelkklaee...sevdlseeieklekkleklkkeiyknltpwqkvqlaRhpeRpktldyiealfedfvelhGDrafadDkAivg 96 
                 +ldfe+piaele+ki++l++++++    +++++ee+++l++k+ +l+++i+++l +wq  qlaRhp+Rp+tldy++  f++f el+GDrafadDkAivg
  CTQ26533.1   5 FLDFEQPIAELEAKIDSLTAVSRQdekLDINIDEEVHRLREKSVELTRKIFADLGAWQVAQLARHPRRPYTLDYVRLAFDEFDELAGDRAFADDKAIVG 103
                 58***************999966633356779******************************************************************* PP

        ACCA  97 glarlegqpvmvigqqKGrdtkerlkrnfGmakPeGYrKAlrlmklAe 144
                 g+arl+g+pvm+ig+qKGr+tke+++rnfGm+ PeGYrKAlrlm++Ae
  CTQ26533.1 104 GIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMEMAE 151
                 ***********************************************8 PP

>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.1   3.9e-21   1.7e-17     272     425 ..      85     245 ..      58     292 .. 0.86

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 3.9e-21
                     C-EEESTTSS....TTEEEEEEEETTEEEEEEEE--S........EEETTEE-HHHHHHHHHHHHHHHHTT--EEEEE-BSEE--SHHHHHTTHH CS
  Carboxyl_trans 272 eFlEikegyA....ktvVvGfArlgGipvGvvAnetr........veaGqvlfidsavKaarfirlcdaenlPlviladvrGflvGqrqeyggil 354
                     eF+E+  + A    k +V G Arl+G+pv +++ ++          + G +  +++  Ka r +++ +++++P+++++d++G  +G  +e+ g  
      CTQ26533.1  85 EFDELAGDRAfaddKAIVGGIARLDGRPVMIIGHQKGretkekirRNFG-MPAPEGYRKALRLMEMAERFKMPIITFIDTPGAYPGVGAEERGQS 178
                     5666665555445568999****************999******99999.********************************************* PP

                     HHHHHHHHHHHT--S-EEEEE-TEEEHHHHHTTTGGGSTTTTEEETTT-EEESS-HHHHHHHHSHHHHHHH CS
  Carboxyl_trans 355 khGaklvdalaeakvPkitvilrkayGGayvvmdskingadlvaawptariaVlgpegaveilfrkekaaa 425
                      ++a  + +++ + vP+i  +++++  G+ ++++  +  +  +++   +  +V+ peg ++il++ +++a 
      CTQ26533.1 179 EAIARNLREMSRLSVPVICTVIGEGGSGGALAIGVGDKVN--MLQY--STYSVISPEGCASILWKSADKAP 245
                     ***********************9999999***9998777..3333..56**************9987754 PP

>> MdcE  Malonate decarboxylase gamma subunit (MdcE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.2e-07   0.00052       3     177 ..      86     263 ..      84     313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.2e-07
                 HHHHHS--TTS-TTEEEEEEEETTEEEEEEEE---TT........SS-B-H..HHHHHHHHHHHHHHTSSS--EEEEEEEE--B--SHHHHHHTHHHHH CS
        MdcE   3 laaLfpdgsgiaaslkvldgsltlesvrfvaVigdan........kgevGv..dealaLaaaVleaieraekrpilvlvDvasQrlgrrdEllGiheal 91 
                 +++L++d+ +  a++k + g +   ++r+v++ig  +        + + G+   e+++ a +  e+  ++ k pi+  +D+++   g + E  G +ea+
  CTQ26533.1  86 FDELAGDR-AF-ADDKAIVGGIARLDGRPVMIIGHQKgretkekiRRNFGMpaPEGYRKALRLMEMA-ERFKMPIITFIDTPGAYPGVGAEERGQSEAI 181
                 55666653.33.4455555555566**********99999999998888873359999999999998.7889**************************9 PP

                 HHHHHHHHHHHHHT--EEEEEEEEEEHHHHHHTTTT-SEEEEEET-EEESS-HHHHHHHHT--HHHHHHHGGCSGGG--SHHHHHT CS
        MdcE  92 ahlakalarArlaGhpvigllvGkavsGaflahglqanrlialpgvqvavmdkasaArvTkrsveaLealaksipvfAydvdnyar 177
                 a     + r      pvi  ++G+  sG+ la g   +++  l+  +  v+     A +  +s ++    a+++ ++A+ ++++  
  CTQ26533.1 182 ARNLREMSRL---SVPVICTVIGEGGSGGALAIGV-GDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKL 263
                 9887776655...46*******************7.57888899999999999999999999999999999999999998877654 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2     3e-05      0.14      23      69 ..       7      53 ..       2      55 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3e-05
        Med9 23 dletktgelrhkLkkarelirelpgidrsveeqeaeieeleeqlakK 69
                d+e+ ++el  k+++  ++ r+++ +d +++e   +++e++ +l++K
  CTQ26533.1  7 DFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLREKSVELTRK 53
                99*****************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2410.90
//
Query:       CTQ26534.1  [L=729]
Description: lysine decarboxylase 2, constitutive [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     5e-191  634.9   0.0   6.1e-191  634.6   0.0    1.1  1  OKR_DC_1    Orn/Lys/Arg decarboxylase, major domain
    2.6e-46  157.2   0.0    5.2e-46  156.2   0.0    1.5  1  OKR_DC_1_C  Orn/Lys/Arg decarboxylase, C-terminal domain
    5.2e-27   94.3   0.0    1.2e-26   93.2   0.0    1.7  1  OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain


Domain annotation for each model (and alignments):
>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  634.6   0.0    1e-194  6.1e-191       1     416 [.     142     556 ..     142     557 .. 0.99

  Alignments for each domain:
  == domain 1  score: 634.6 bits;  conditional E-value: 1e-194
                 -HHHHHHHHHHHH---SSSSSTTTTTCGGGGSHHHHHHHHHH-HHHHHT---TTTGGGBBTTTTBTHHHHHHHHHHHHCT-SEEEEESSHHHHHHHHHH CS
    OKR_DC_1   1 pPlykaLvkyveegkvsfavPGHqgGavfkkePagrlfydffGenllraDlsievveLgdLldheGaikeaqkyaarvfgadksyfvvnGTsssnkvvl 99 
                 pP+++aL++yv+egk++f++PGH+gG++++k+P+g+lfydffG n+l+aD+si+v+eLg+Lldh+G++ ea++y+ar+fga++sy+v+nGTs+snk+v 
  CTQ26534.1 142 PPFTRALFNYVQEGKYTFCTPGHMGGSAYQKSPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARAFGAEQSYMVTNGTSTSNKIVG 240
                 8************************************************************************************************** PP

                 HHH--TTEEEEEESS--HHHHHHHHHS-EEEEEE--EB-TTS-BE---GGGGSHHHHHHHHHHSTTTGSESEEEEESS-TTSEEE-HHHHHHHHTTSES CS
    OKR_DC_1 100 navltpgdlvlvdRNcHKSiehalvlsgatPvylepernalgiiggidlkefeeetlkekikevpdakaprlavitnsTYdGvlynakeivdkleklsd 198
                 ++++++g+++l+dRNcHKS++h+l++s+++P++l+p+rnalgi+ggi+++ef+++++++k++++  a++p++avitnsTYdG+lyn+++++++l++ s 
  CTQ26534.1 241 MYSAPAGSTLLIDRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPRREFTRDSIQQKVRDTGGAQWPVYAVITNSTYDGLLYNTTWLKETLDVPS- 338
                 **************************************************************************************************. PP

                 EEEEE-TT-TTGGGSGGGTTSSSSSSS-BTTBEEEEEEEHCCCCS--TT-EEEEEES-BT--HHHHHHHHHHTS-SS--HHHHHHHHHHHHHHSHHHHH CS
    OKR_DC_1 199 rilfDeAwvgyeqfiplyadaskllaenendpgilvtqSvHKllaalsqaSlihvkeelivneerlneafmmhattSpsYpllAsldvaakmlegesgr 297
                  i+fD+Awv+y++f+p+y+++s++++e+  +++i++tqS+HK+laalsqaSlih+k++  ++ee++neafmmh++tSpsYp++As+++aa+ml+g+sg+
  CTQ26534.1 339 -IHFDSAWVPYTHFHPIYQGKSGMSGERIPGKVIFETQSTHKMLAALSQASLIHIKGN--YDEETFNEAFMMHTSTSPSYPIVASIETAAAMLRGNSGK 434
                 .*********************************************************..8************************************** PP

                 HHHHHHHHHHHHHHHHHHH...HSSS---EESS-SEEESTSGEEE-TT-TTT--TT--TTSEEE-TTEEEEE-SSB-TTSSB-SS---HHHHHHHHHHT CS
    OKR_DC_1 298 rlleevveraielrkeikr...ldnaelikpvnpevvdekeffklepgekWhgfediadeqyflDPiKlliltPGidedGeleelGvpaaivakyLren 393
                 rl+++++era+++rke++r   +++++++++++pe vd++e+++++pge+Whgf+d+++++++lDP+K++iltPG+de+G+++e+G+paa+vak+L+e+
  CTQ26534.1 435 RLIQRSIERALDFRKEVQRlreESDGWFFDIWQPEAVDKAECWPVAPGEDWHGFKDADADHMYLDPVKVTILTPGMDEQGNMDEEGIPAALVAKFLDER 533
                 *******************99999*************************************************************************** PP

                 T---SEEESSEEEEE--TTS-HH CS
    OKR_DC_1 394 givvektdlynilflltlgedkt 416
                 g+vvekt++yn+lfl+++g+dkt
  CTQ26534.1 534 GVVVEKTGPYNLLFLFSIGIDKT 556
                 ********************987 PP

>> OKR_DC_1_C  Orn/Lys/Arg decarboxylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   0.0   8.6e-50   5.2e-46       1     131 [.     582     712 ..     582     713 .. 0.99

  Alignments for each domain:
  == domain 1  score: 156.2 bits;  conditional E-value: 8.6e-50
                 SHHHHHHSHHHHTT-BHHHHHHHHHHHHHHHTHHHHHHHHCCS--EESS-HHHHHHHHHTT-EEEEEGGG-TTSBBSS-BEECTT-S-SB-TTEE--CC CS
  OKR_DC_1_C   1 lPelvkekperYegmtlrdLcqemhdlykeakvaelqkeafsklpepamtpaeayeelvrgevelvpldelegriaaelvlpyPpGipllvpGErlgee 99 
                 lP+l++e+p+ Y++m+++dL+q +h+l++++++ +l+ +af+ lpe++mtp++a+++ ++geve+++l++l gri+a+++lpyPpG+pll+pGE+++ee
  CTQ26534.1 582 LPDLYAEDPDFYRNMRIQDLAQGIHRLIRQHQLPQLMLSAFDVLPEMKMTPHHAWQRQIKGEVETIELENLVGRISANMILPYPPGVPLLMPGEMITEE 680
                 8************************************************************************************************** PP

                 CHHHHHHHHHHHHHCCCSTTS--EEETEEE.T CS
  OKR_DC_1_C 100 skaildYlkaleefdnkfPGFeteiqGvevee 131
                 s+a+ld+l++l+++ +++PGFet+i+G +++e
  CTQ26534.1 681 SRAVLDFLLMLCSIGRHYPGFETDIHGAKRDE 712
                 ***************************99876 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0     2e-30   1.2e-26       2     111 .]      27     136 ..      26     136 .. 0.99

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 2e-30
  OKR_DC_1_N   2 kgaairelaealekegfevvgvtstdDllsvieqnsriaavvlsvddeaaelldeirernedlPvFllaetrtsedvpadvlreidgfielledtpefi 100
                 k+++i+el++al+++gf++++++++ Dll++ie+n+ri++v++++d+++ +l++ i+++ne lP++++++ +++ dv+ ++lr+  +f+e++++  e+i
  CTQ26534.1  27 KDEPIKELEAALQRQGFQTIWPQNSADLLQFIEHNPRICGVIFDWDEYSVDLCSDINQLNEYLPLYAFINAHSTMDVSSQDLRMTLWFFEYALGLSEEI 125
                 7899*********************************************************************************************** PP

  OKR_DC_1_N 101 arqieaaakkY 111
                 a +i + +++Y
  CTQ26534.1 126 ATRIGQYTREY 136
                 *********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 5366.29
//
Query:       CTQ26535.1  [L=129]
Description: putative S-C lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-22   79.9   0.0      2e-22   79.8   0.0    1.0  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
      5e-14   52.5   0.0    5.9e-14   52.3   0.0    1.0  1  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
    4.2e-08   33.5   0.0    5.2e-08   33.2   0.0    1.1  1  Glyoxalase_3  Glyoxalase-like domain
    2.1e-06   28.5   0.0    3.4e-06   27.8   0.0    1.4  1  Glyoxalase_6  Glyoxalase-like domain
    0.00018   21.4   0.0    0.00028   20.8   0.0    1.3  1  Glyoxalase_2  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   5.5e-26     2e-22       2     128 .]       7     126 ..       6     126 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 5.5e-26
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGE CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvk 100
                 ++h+a++++d+++s +FY+++LGf+l  ++    e +++++    +g+ +iel++++ p+ ++++      +  ++ ++a++v+d+++a+ +l ++gv+
  CTQ26535.1   7 VHHIAIIATDYARSKAFYCDILGFTLQSEFY-RAERDSWKGDLALNGEYVIELFSFPFPPARPSRP-----EACGLRHLAFSVDDIDAAVAHLTAHGVE 99 
                 8******************************.8899******************************.....69************************** PP

                 EEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase 101 vvaepgrhyfgalysfyfrDpdGillei 128
                 + a++ + ++g++++f f Dpd   lei
  CTQ26535.1 100 CEAIRVDPFTGKRFTF-FSDPDDLPLEI 126
                 **************99.*****988886 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   1.7e-17   5.9e-14       1     109 []       8     115 ..       8     115 .. 0.88

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 1.7e-17
                   EEEEEE-S-HHHHHHHHHH.TT-E.ESS--E.EETTTTEEEEEEEETTEEEEEEE.ESSTT-THHHTS-EEEEEEEEES-HHHHHHHHCTTTEEEEE CS
  Glyoxalase_4   1 dQigivVeDleaavarfsallGvg.pwqryrdepqevdlafallgsgsvqieLie.plegpeflaehgeglhhlaywvddldaavarleeqGfevvq 95 
                   ++i+i+ +D  +  a+++++lG++ +++ yr e  + + ++al+g+    ieL + p + + + +    gl hla+ vdd+daava+l+++G+e+  
    CTQ26535.1   8 HHIAIIATDYARSKAFYCDILGFTlQSEFYRAERDSWKGDLALNGE--YVIELFSfPFPPARPSRPEACGLRHLAFSVDDIDAAVAHLTAHGVECEA 102
                   8**********************96778899*************99..59****879999999999****************************754 PP

                   EEE-GGGTT-EEEE CS
  Glyoxalase_4  96 kgvragaagrrfay 109
                     v     g rf++
    CTQ26535.1 103 IRVD-PFTGKRFTF 115
                   3323.245677776 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.5e-11   5.2e-08       2     113 ..       8     112 ..       7     123 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.5e-11
  Glyoxalase_3   2 DHvvlavpdleeaaarfarrlGftvtpggehpglgtaNalvmfgdgY.lElla.vdpeapaperprlfgldrlakgeglhtlalrtddidataarlr 96 
                   +H+ +++ d ++  a + + lGft++     ++  ++   + ++++Y +El++ + p a++ +rp         ++ gl +la+++ddida++a+l+
    CTQ26535.1   8 HHIAIIATDYARSKAFYCDILGFTLQSEFYRAERDSWKGDLALNGEYvIELFSfPFPPARP-SRP---------EACGLRHLAFSVDDIDAAVAHLT 94 
                   8******************************************999769****64566665.233.........358******************** PP

  Glyoxalase_3  97 aaGvd.eagrrvrpdggd 113
                   a+Gv+ ea+r     g++
    CTQ26535.1  95 AHGVEcEAIRVDPFTGKR 112
                   ***986555444444444 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   9.4e-10   3.4e-06       2     102 ..      10     122 ..       9     127 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 9.4e-10
  Glyoxalase_6   2 vvldaadpaalaaFwaaalgwevereeaaledpegvgp.aaedaatllfqrvpe........paknr...vHldlavedldaevarlvalGArvlre 86 
                   +++ a+d a+  aF++++lg+++++e + +e+ ++ g  a +++  + +   p         +        Hl ++v+d+da+va+l a G +    
    CTQ26535.1  10 IAIIATDYARSKAFYCDILGFTLQSEFYRAERDSWKGDlALNGEYVIELFSFPFpparpsrpE---AcglRHLAFSVDDIDAAVAHLTAHGVECEAI 103
                   677799*********************444444444430334444444444444776665532...03448********************999988 PP

  Glyoxalase_6  87 prdgthgr...vlaDPeGn 102
                     d+ +g+    + DP+  
    CTQ26535.1 104 RVDPFTGKrftFFSDPDDL 122
                   8888877788899999875 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   7.9e-08   0.00028       4     113 ..      10     126 ..       7     129 .] 0.77

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 7.9e-08
                   ---EES-HHHHHHHHHHTT---EEEE-..SSEEEETTS-EEEEH.HHHHH-------S--SS.....-EEEEEES-HHHHHHHH..GGGS-EEEEEE CS
  Glyoxalase_2   4 illvvkdieeskkFYedvlelkikldf..Genvsfetgfalked.lkelinldesiaeqsnn.....feLyFevedvdaflqklkeaeniellhelk 92 
                   i +++ d  +sk FY d+l   ++ +f   e  s+++++al+ + + el +++   a  s+       +L F v+d+da++ +l  ++ +e    ++
    CTQ26535.1  10 IAIIATDYARSKAFYCDILGFTLQSEFyrAERDSWKGDLALNGEyVIELFSFPFPPARPSRPeacglRHLAFSVDDIDAAVAHLTAHG-VECE-AIR 104
                   5688999*******************94457789*******95538899998765555333211112579**************6665.9875.556 PP

                   E-TT.S-EEEEEE-TT--EEEE CS
  Glyoxalase_2  93 ekpW.gqrvirfyDpDkhiiEi 113
                   + p+ g+r   f DpD   +Ei
    CTQ26535.1 105 VDPFtGKRFTFFSDPDDLPLEI 126
                   6665399999******988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 975.07
//
Query:       CTQ26536.1  [L=437]
Description: tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-57  194.2   0.0    2.1e-57  193.8   0.0    1.1  1  ATP_bind_3   PP-loop family
    1.5e-23   82.0   0.0    1.5e-23   82.0   0.0    2.1  2  TilS_C       TilS substrate C-terminal domain
    5.1e-20   71.7   5.3    5.1e-20   71.7   5.3    2.8  4  TilS         TilS substrate binding domain
  ------ inclusion threshold ------
       0.18   11.8   0.0       0.38   10.8   0.0    1.6  2  PAPS_reduct  Phosphoadenosine phosphosulfate reductase family


Domain annotation for each model (and alignments):
>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.8   0.0   4.7e-61   2.1e-57       2     180 ..      19     195 ..      18     197 .. 0.97

  Alignments for each domain:
  == domain 1  score: 193.8 bits;  conditional E-value: 4.7e-61
                 EEEE--SCHHHHHHHHHHHHHCTTTTT.EEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE--HHHCTTSTCCCHHHHHHHHHHHHCHHCCT.CE CS
  ATP_bind_3   2 vlvAvSgGlDSmaLllllaklkkklgi.klvaihvdhglreeskeeaelvkelckklnikleiekvdvakkkgknleeaARelRYevlkealkkegiev 99 
                 +lvA+SgGlDS++Ll+ l+ l+++  + +l+a+hv+hgl+++++++ ++++++c++++++l++++v++a+  g ++e+ AR +RY++++ +l++   ev
  CTQ26536.1  19 LLVAFSGGLDSTVLLHQLVLLREQDPSlTLRAVHVHHGLSAHADDWVAHCRQICQQWQVPLVVHRVTLARG-GLGVEAHARAARYQAFQDTLNAG--EV 114
                 79*****************999998888***************************************9986.********************999..** PP

                 EE---BHHHHHHHHHHHHCCT--CCHHH-S-SEEEETTCCEE-CCCT--HHHHHHHHHHTT---B--CGGGCTTSHHHHHH CS
  ATP_bind_3 100 lllAhhadDqaEtfllrlargsglaglagikeaseiasirlvRPlLkvskeeleeylkekkikwveDesNadekyeRnriR 180
                 l++A+h+dDq+Et+ll+l+rgsg++gl++++++s +a+ rl+RPlL+ ++e l++++  ++++w+eDesN+d+ y+Rn++R
  CTQ26536.1 115 LVTAQHQDDQCETLLLALKRGSGPTGLSAMAPSSAFAGSRLLRPLLNETRESLRQWALAHQLSWIEDESNQDDTYDRNFLR 195
                 ********************************************************************************9 PP

>> TilS_C  TilS substrate C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.7       2.3   1.1e+04      33      41 ..     199     207 ..     196     207 .. 0.81
   2 !   82.0   0.0   3.3e-27   1.5e-23       1      74 []     360     432 ..     360     432 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.3
                 -HHHCCCSE CS
      TilS_C  33 PpwlRdriP 41 
                  p lR+r+P
  CTQ26536.1 199 IPVLRERWP 207
                 5889****9 PP

  == domain 2  score: 82.0 bits;  conditional E-value: 3.3e-27
                 EEEEC-.TTSEEEBTTSSSEEEHHHHHHHCT--HHHCCCSEEEEETTEEEEET.TTEEBCCCB-SSSSS-EEEEE CS
      TilS_C   1 lsvrfrrggerlqpagrggsrkLKklfqeagvPpwlRdriPLlfygdelvava.glgvsaafsaqkkeaglrlew 74 
                 ++vrfr +++ l+++gr+g+rkLKkl+qe+gv+pw+Rd++PLlfyg++ +a+a +l+v+ +++ +++e g+rl w
  CTQ26536.1 360 VTVRFR-ASGHLHIVGRHGGRKLKKLWQELGVAPWRRDTTPLLFYGETPIAAAdDLFVTTEGEVKDGE-GVRLMW 432
                 79****.********************************************9989********98766.579888 PP

>> TilS  TilS substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3       2.4   1.1e+04      39      42 ..      68      71 ..      38      87 .. 0.54
   2 ?   -3.7   0.9       3.9   1.8e+04      18      26 ..     167     175 ..     154     178 .. 0.65
   3 !   71.7   5.3   1.1e-23   5.1e-20       1      67 []     245     312 ..     245     312 .. 0.99
   4 ?   -2.8   0.0       2.1   9.5e+03      33      48 ..     379     394 ..     374     397 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.4
                HHHH CS
        TilS 39 lrql 42
                 rq+
  CTQ26536.1 68 CRQI 71
                3332 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.9
                 HHHHHHHTT CS
        TilS  18 LRrWLaqlg 26 
                 LR W  +++
  CTQ26536.1 167 LRQWALAHQ 175
                 666666555 PP

  == domain 3  score: 71.7 bits;  conditional E-value: 1.1e-23
                 E-HHHHHHS-HHHHHHHHHHHHHHTTTT--HHHHHHH.HHHHH.H-S-SEEEEE-ST.EEEEETTEEE CS
        TilS   1 LsiaaLaaLsparqrrlLRrWLaqlglpmpsaahLeellrqlllaaedaqpqldlpg.evrRyrgrLy 67 
                 L+ia+La++sp+r+++lLRrWLa +++pmp ++  e+l+++++la+eda+p+l+l++ +vrR+++rLy
  CTQ26536.1 245 LAIAPLATMSPPRRAALLRRWLAGQQAPMPAREVPERLWHEVALAREDASPCLRLGEfTVRRFQQRLY 312
                 79******************************************************999********9 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 2.1
                 HHHHH.HHHHH.H-S- CS
        TilS  33 ahLeellrqlllaaed 48 
                 + L  l+++l  a ++
  CTQ26536.1 379 RKLKKLWQELGVAPWR 394
                 5688899999877665 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.4e-05      0.38       2      40 ..      19      57 ..      18     154 .. 0.77
   2 ?   -2.5   0.0         1   4.5e+03     134     153 ..     157     176 ..     139     179 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.4e-05
                 EEEE--SSCTCHHHHHHHHHHCTTHEEEEEE-STB-HHH CS
  PAPS_reduct  2 lvvsvsgGkdslVllhLalkafkpvpvvfvdtghefpet 40
                 l v++sgG ds+Vllh ++   ++ p + ++  h +  +
   CTQ26536.1 19 LLVAFSGGLDSTVLLHQLVLLREQDPSLTLRAVHVHHGL 57
                 679*************88777777644444444433333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1
                  -CCCT--HHHHHHHHHHCT- CS
  PAPS_reduct 134 fPllnWteedvwqyilreni 153
                   Plln t e   q++l++++
   CTQ26536.1 157 RPLLNETRESLRQWALAHQL 176
                  49999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3272.52
//
Query:       CTQ26537.1  [L=86]
Description: modulator of Rho-dependent transcription termination [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-26   92.0   0.1    2.2e-26   91.8   0.1    1.0  1  ROF       Modulator of Rho-dependent transcription terminatio


Domain annotation for each model (and alignments):
>> ROF  Modulator of Rho-dependent transcription termination (ROF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.1   1.2e-30   2.2e-26       1      80 []       9      83 ..       9      83 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 1.2e-30
                SS--SSHHHHHHHHTTTT-EEEE-TTT--EEESS-EEE--S.SS-EEEEEETTEEEEESTT--SEEE....ETTTEEE-S CS
         ROF  1 pisCddyDylEiaClyryrlkleLkdgetiegkakdtltrkekeEyLvvetegeeqelrldeilslsvltenpefgrvvf 80
                pi+CddyD+lE+aC++++ l+l Lkdge++++ka+d+++rk + EyLvve +g+ +elrld+i+s+s    +pe+g+vv+
  CTQ26537.1  9 PINCDDYDNLELACQHHLVLTLALKDGEQLQAKASDLISRK-NIEYLVVELAGNVRELRLDKIASFS----HPEIGTVVV 83
                7****************************************.*************************....******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 710.07
//
Query:       CTQ26538.1  [L=66]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-36  122.8   1.5    5.6e-36  122.6   1.5    1.0  1  UPF0253   Uncharacterised protein family (UPF0253)


Domain annotation for each model (and alignments):
>> UPF0253  Uncharacterised protein family (UPF0253)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   1.5   3.1e-40   5.6e-36       1      65 []       1      65 [.       1      65 [. 0.99

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 3.1e-40
     UPF0253  1 mkkycelirelyaqIgsgdlgYipdAiscalktLdevaanealpeevrekAAyAAANLliSDyed 65
                m++ycelir++ya+I+sgdlgYipdA++c+lk+L+e+aa+eal+e+vrekAAyAAANLl+SDy++
  CTQ26538.1  1 MDHYCELIRKRYAEIASGDLGYIPDALGCVLKVLNEIAADEALSESVREKAAYAAANLLVSDYVN 65
                99*************************************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 592.45
//
Query:       CTQ26539.1  [L=181]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-70  234.5   1.1    6.2e-70  234.3   1.1    1.0  1  YaeQ      YaeQ protein
  ------ inclusion threshold ------
      0.029   13.7   1.2      0.071   12.5   1.2    1.6  1  BRX       Transcription factor regulating root and shoot grow


Domain annotation for each model (and alignments):
>> YaeQ  YaeQ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.3   1.1   6.9e-74   6.2e-70       1     172 [.       1     173 [.       1     174 [. 0.99

  Alignments for each domain:
  == domain 1  score: 234.3 bits;  conditional E-value: 6.9e-74
        YaeQ   1 MAlkatiykaelqladvdrgvyeslsltlArHPSEteerlmvRllAfalnaeeeLaftkglsaedepdlwekdltgeielWievGqpdekrlkkaskra 99 
                 MAlkatiyka++++ad+dr+ + + +ltlA+HPSEt+er+m+RllA++ +a+e+L+ft+gls++dep+lw  + +  ++lWie+G pde+r+kka++ra
  CTQ26539.1   1 MALKATIYKAAVNVADLDRNQFLDANLTLAQHPSETQERMMLRLLAWIKYADERLQFTRGLSSDDEPELWLLNDHLGVDLWIELGLPDERRIKKACSRA 99 
                 *************************************************************************************************** PP

        YaeQ 100 eqvvvyay.graaevwwkqnkeklsrlknlsvlqldeealealaalaersmklqvtiqdgelylsddeesveve 172
                 ++v+++ay +raae+ww+qn++kl+ + +l+++ ld+++l+ l+a a+r+m+lq+t+q+g+++lsd+++++e++
  CTQ26539.1 100 QAVALFAYnSRAAEIWWQQNQSKLAAYPKLTIWYLDDAQLALLSAFADRTMTLQATLQEGSIWLSDARNNLEIQ 173
                 ********999************************************************************997 PP

>> BRX  Transcription factor regulating root and shoot growth via Pin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.2   7.9e-06     0.071      36      53 ..     107     124 ..     105     126 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.9e-06
         BRX  36 FsekqAeeWWeeNkervl 53 
                 ++ ++Ae WW++N++++ 
  CTQ26539.1 107 YNSRAAEIWWQQNQSKLA 124
                 57789*********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1469.30
//
Query:       CTQ26540.1  [L=137]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-23   80.4   1.1    1.2e-22   80.0   1.1    1.0  1  RF-1      RF-1 domain
  ------ inclusion threshold ------
        1.4    9.1   5.6        2.3    8.5   5.6    1.4  1  DUF3886   Protein of unknown function (DUF3886)


Domain annotation for each model (and alignments):
>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   1.1   1.4e-26   1.2e-22       5     116 .]       8     132 ..       3     132 .. 0.83

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 1.4e-26
                 CE--GGGEEEEEE---SSSSSSGCSSSCEEEE...EETTT......................TEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCC CS
        RF-1   5 ieidekdleidtfrssGaGGQnVNktesaVrl...thlpt......................gvivvecqeeRsqekNrekAlerLkaklkekeleeek 78 
                 +++ ++++ ++ +r++GaGGQ+VNk ++a++l   +  ++                      gv+++++qe Rsqe+Nre A+ rL a +ke      +
  CTQ26540.1   8 VALADDEIVLSGIRAQGAGGQHVNKASTAIHLrfdI--KAsslpefykerllaashhlisadGVVIIKAQEYRSQEMNREAAIARLVALIKEL--TAVQ 102
                 78899***************************9553..4346888*****************9***************************553..3333 PP

                 CCCHTTTTT-.S.-S---S--ECEEEECGCTTEEEETT CS
        RF-1  79 eeekkrrvkkekkkigtgssekiRtynkkpqsrvkdhr 116
                 ++++++r ++  +      s+++R+ +k ++s vk +r
  CTQ26540.1 103 KSRRETRPTR--A------SKERRLASKAQKSSVKALR 132
                 3333333333..4......7899999999999999887 PP

>> DUF3886  Protein of unknown function (DUF3886)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.6   0.00026       2.3      14      54 ..      85     126 ..      73     132 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00026
     DUF3886  14 edvlekLkakkkeLkeeeekrkeeekarreeerkarek.nks 54 
                 e + ++L a  keL + ++ r+e + +r+ +er+   k +ks
  CTQ26540.1  85 EAAIARLVALIKELTAVQKSRRETRPTRASKERRLASKaQKS 126
                 556799*****************************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1061.03
//
Query:       CTQ26541.1  [L=239]
Description: lipoprotein involved with copper homeostasis and adhesion [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-32  111.3   0.1    5.4e-32  109.9   0.1    1.8  2  NlpE_C       NlpE C-terminal OB domain
    5.1e-26   91.4   0.0    1.9e-25   89.6   0.0    1.9  2  NlpE         NlpE N-terminal domain
  ------ inclusion threshold ------
      0.056   14.4   0.0       0.39   11.7   0.0    2.1  2  Lipocalin_4  Lipocalin-like domain


Domain annotation for each model (and alignments):
>> NlpE_C  NlpE C-terminal OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.3   1.3e+04      36      48 ..      76      88 ..      66      90 .. 0.71
   2 !  109.9   0.1     9e-36   5.4e-32       2      90 .]     150     238 ..     149     238 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.3
      NlpE_C 36 eLergYlaarkep 48
                 ++++Y+ ar+ep
  CTQ26541.1 76 VMNEHYQGARREP 88
                4567788888776 PP

  == domain 2  score: 109.9 bits;  conditional E-value: 9e-36
      NlpE_C   2 stpmklkGmyrymadaatFtdCatgktypveenaeLergYlaarkepgkpvllelegrfelrpsmeegavekalvvdkkirfdpgktCr 90 
                  tpm+++Gmy ymadaatFtdCatgk+++v++na+Ler+Y aar +   p+ll++eg+f+l+++ ++g++ k+l+ d+  +f pgk+C+
  CTQ26541.1 150 TTPMAMRGMYFYMADAATFTDCATGKRVAVANNAQLERDYAAARGTDTRPILLVVEGHFTLEANPDTGEMMKTLMTDQTGKFIPGKDCS 238
                 79**************************************************************************************5 PP

>> NlpE  NlpE N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0   3.1e-29   1.9e-25       1      85 [.      51     135 ..      51     136 .. 0.96
   2 ?   -1.4   0.0      0.78   4.6e+03      43      52 ..     206     215 ..     177     236 .. 0.55

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 3.1e-29
                 EEEEE--TTSSEEEEEEEE-TTSEEEEEEEEESTT.-.EEEEEEEEEEEETTTSEEEECE---TCEEEEECTCEEEEEECTS.B..S CS
        NlpE   1 YeGtlPCaDCegikttLtLnadgtyelseeylgks.e.kefeekGkfswnekgsiltltpeedektyykvgenklrmldregkpies 85 
                 ++G+lPCaDCegi+t+L L++dgt++++e+y+g++ e ++f ++G++   +++++l+lt++++ek+y++ + +kl+mldr+g pi+s
  CTQ26541.1  51 WRGVLPCADCEGIDTSLFLEKDGTWVMNEHYQGARrEpSSFASYGTWA--RTADKLVLTNSKGEKSYFRAKGDKLEMLDRNGSPIQS 135
                 68********************************9658********88..********************8888***********98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.78
                 EEEEEETTTS CS
        NlpE  43 Gkfswnekgs 52 
                 G+f+++++ +
  CTQ26541.1 206 GHFTLEANPD 215
                 5555422222 PP

>> Lipocalin_4  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.6e-05      0.39      20      77 ..      58     116 ..      32     125 .. 0.80
   2 ?    0.2   0.0      0.25   1.5e+03      17      65 ..     166     215 ..     155     230 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.6e-05
                  --E.....EEE-SS..S-EEE----..SS----.-EEEEEEEETTTTEEEET-S--EEE CS
  Lipocalin_4  20 decekgsyitfnantttfesyttydggscnesk.desgtytisgnkltitvtdgesket 77 
                  ++ce +++  f ++++t  +++ y+g   ++s+  ++gt+  + +kl +t++ ge +++
   CTQ26541.1  58 ADCEGIDTSLFLEKDGTWVMNEHYQGARREPSSfASYGTWARTADKLVLTNSKGEKSYF 116
                  79999999999999999999999988655444359***************999986544 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.25
                  TT---E.....EEE-SS..S-EEE----..SS----....-EEEEEEEETTTT CS
  Lipocalin_4  17 etldecekgsyitfnantttfesyttydggscnesk....desgtytisgnkl 65 
                   t+++c +g ++   +n   + +y    g++   ++      +g +t++ n  
   CTQ26541.1 166 ATFTDCATGKRVAVANNAQLERDYAAARGTD---TRpillVVEGHFTLEANPD 215
                  5778888888888888866666666444432...2234445566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1916.39
//
Query:       CTQ26542.1  [L=280]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-11   43.2   0.0    1.3e-08   35.1   0.0    2.1  2  Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX
    6.4e-08   32.6   0.0    8.1e-05   22.6   0.0    2.5  2  NLPC_P60       NlpC/P60 family


Domain annotation for each model (and alignments):
>> Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.5e-12   1.3e-08       2      99 ..      65     156 ..      64     159 .. 0.91
   2 !    6.1   0.0    0.0012        11     103     123 ..     200     219 ..     176     239 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.5e-12
  Peptidase_C92   2 lekGdiifqtsraslseainpatasefkHvgivvgeegderlvveaaakegvrvtpLseflarrssiavyrlkealtaeqrqkaaeaalrrlgkpY 97 
                    l++Gd++f++s    s  i+  +as+ +Hv+++vge++    v+ea +  gv+v++L++ la++++++ +r+ +  t +q  ++  +a +  +  Y
     CTQ26542.1  65 LRSGDLLFSSSLGVTSLGIRAFSASSVSHVALYVGEGQ----VAEA-TGAGVQVISLQQALAHSDKLFALRVPDL-TPDQATTMKSFAWQVKDSGY 154
                    789********************************875....6***.699************************7.89999999999988877777 PP

  Peptidase_C92  98 df 99 
                    ++
     CTQ26542.1 155 NY 156
                    75 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0012
  Peptidase_C92 103 leddrlYCsklVakaykealg 123
                     +++  +Cs++V +a+  ++g
     CTQ26542.1 200 GDKKAWFCSEFVSEAF-VRAG 219
                    468999**********.4444 PP

>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0     9e-09   8.1e-05      30      95 ..      45     120 ..      32     130 .. 0.83
   2 !    7.3   0.0   0.00051       4.6      16      79 ..     207     270 ..     198     278 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 9e-09
                 ---SSHHHHCCCSEE..EEGGG--TTEEEEESG............TGGESEEEEEEETTEEEEEETTEEEEEETTSTT CS
    NLPC_P60  30 elprssgeqeaagkkkeiskselkrGDLvffkt............kkgisHvgiYlgngkmlhassekvsvsslseky 95 
                 +l+r+s+     g + ei +s+l+ GDL+f ++            ++ +sHv++Y+g+g++ +a++ +v+v sl+++ 
  CTQ26542.1  45 TLQRQSSIA-GSGLR-EIAESDLRSGDLLFSSSlgvtslgirafsASSVSHVALYVGEGQVAEATGAGVQVISLQQAL 120
                 566666655.33444.59************99999999999999999***********************99888765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00051
                 HHHHHHHHHHTTT----SSHHHHCCCSEE..EEGGG--TTEEEEESG...TGGESEE..EEEEETTEEE CS
    NLPC_P60  16 CsglvryafakagielprssgeqeaagkkkeiskselkrGDLvffkt...kkgisHv..giYlgngkml 79 
                 Cs +v+ af +ag  l   + ++            ++++GD+  fk+    + + H   g+Yl+ gk++
  CTQ26542.1 207 CSEFVSEAFVRAGHPLTLAQAAW--ISP---SDLLHMREGDVATFKPetqLQYVGHLklGVYLQAGKLV 270
                 9999999**99999999988888..333...46789**********96554444553337899888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 2441.19
//
Query:       CTQ26543.1  [L=572]
Description: prolyl-tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-50  171.3   0.0    2.8e-50  170.8   0.0    1.2  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    8.4e-27   93.7   0.1    1.5e-26   92.8   0.1    1.5  1  tRNA_edit       Aminoacyl-tRNA editing domain
    4.1e-21   74.9   0.1    8.9e-21   73.9   0.1    1.6  1  HGTP_anticodon  Anticodon binding domain
  ------ inclusion threshold ------
       0.17   12.5   0.0        0.8   10.3   0.0    2.1  2  TIR_2           TIR domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8   0.0   6.2e-54   2.8e-50       2     179 .]      95     459 ..      94     459 .. 0.99

  Alignments for each domain:
  == domain 1  score: 170.8 bits;  conditional E-value: 6.2e-54
                   EEEETTSEEEEE-SSSHHHHHHHHHHHEEEB.GGSSEEEEEEEEEEBTTTSTBC.TTTB-SEEEEEEEEEEES.GGGHHHHHHHHHHHHHHHHHHTT CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   2 kledrndreyiLkPtneetfvelirdevlrs.krLPlklyqiqtkyRdEksdsr.GLlRvreFhqkdgyvfha.easlddslrdlikaisriferlg 95 
                   ++ dr dr ++L+Pt+ee ++ lir+e l+s k+LPl++yqiqtk+RdE +  r G++R reF +kd+y+fh+ ++sl++ +  +  a+s+if+r+g
    CTQ26543.1  95 RIADRGDRPFVLGPTHEEVITDLIRNE-LNSyKQLPLNFYQIQTKFRDEVR-PRfGVMRSREFLMKDAYSFHTsQESLQETYDAMYAAYSKIFSRMG 189
                   5679***********************.***777*****************.888******************99********************** PP

                   .SCEEEEEEGTTSCBTTSEEEEEEEEETT.................................................................... CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................................... RF
  tRNA-synt_2b  96 lefraiielmsaksadykdkkefeavses.................................................................... 124
                   l fra+  +++  s+ ++ + ef+++ +s                                                                    
    CTQ26543.1 190 LDFRAVQADTG--SIGGSASHEFQVLAQSgeddvifsdssdyaaniefaeavapkepraaatqemtlvdtpnaktiaelveqfnlpiektvktllvk 284
                   *********99..689********************************************************************************* PP

                   ................................................................................................. CS
                   ................................................................................................. RF
  tRNA-synt_2b 125 ................................................................................................. 124
                                                                                                                    
    CTQ26543.1 285 avedsasplvallvrgdhelnevkaeklpqvaspltfateeeiralvnagpgslgpvnmpvpviidrtvavmsdfaaganidgkhyfginwdrdvat 381
                   ************************************************************************************************* PP

                   .......................TSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEEEEEHHHHHHHHHHHH CS
                   .......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 125 .......................ltkgieigtiqklgtrlserlgatvldennreksvimicaaigveRllsaileqn 179
                                          +++gie+g+i++lgt++se+++a v  e++r++   m+c++igv+R+++a++eqn
    CTQ26543.1 382 pevadirnvvagdpspdgkgtllIKRGIEVGHIFQLGTKYSEAMKAAVQGEDGRNQILTMGCYGIGVTRVVAAAIEQN 459
                   ****************************************************************************98 PP

>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.1   3.4e-30   1.5e-26       1     119 [.     257     376 ..     257     379 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 3.4e-30
   tRNA_edit   1 tpgtktieelaaalgvdpsaiaKtlvlkd...kkgelvlvllpgdreldlkklakllga.kklrlaseeelrellgvepGgvgPlglkaagvpvllDes 95 
                 tp++kti+el+++++ + ++++Ktl++k+   +++ lv++l++gd+el++ k++kl ++ + l++a+eee+r+l++  pG++gP+++    vpv++D +
  CTQ26543.1 257 TPNAKTIAELVEQFNLPIEKTVKTLLVKAvedSASPLVALLVRGDHELNEVKAEKLPQVaSPLTFATEEEIRALVNAGPGSLGPVNMP---VPVIIDRT 352
                 79**************************97655555**********************879**************************6...******** PP

   tRNA_edit  96 lkeyptvvvgagengatlelsped 119
                 ++ ++++++ga+  g++ +  ++d
  CTQ26543.1 353 VAVMSDFAAGANIDGKHYFGINWD 376
                 *******************99996 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.1     2e-24   8.9e-21       1      92 [.     475     567 ..     475     569 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 2e-24
                     SEEEEESSSS.HHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHH CS
  HGTP_anticodon   1 qvvviplnek.aeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklk 92 
                     qv+++p+n++ + +++e+a+kl++eL+a+gi+v +dd++e++g  +++++l+gip ++v+G++ l+++ ++ + r ++e++ ++  ++ve+l 
      CTQ26543.1 475 QVAILPMNMHkSYRVQELAEKLYAELSAQGIEVLMDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVEYLV 567
                     8*********98899***************************************************************************986 PP

>> TIR_2  TIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.6   7.1e+03      23      51 ..     407     432 ..     403     434 .. 0.71
   2 ?   10.3   0.0   0.00018       0.8      10      40 ..     490     520 ..     484     524 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.6
       TIR_2  23 agirvwldrwdlkpgedweeeieeaiess 51 
                 +gi+v  +   ++ g+++ e++++a++  
  CTQ26543.1 407 RGIEVG-HI--FQLGTKYSEAMKAAVQGE 432
                 566652.22..47799******9999875 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00018
       TIR_2  10 kewaeklaeaLeaagirvwldrwdlkpgedw 40 
                 +e aekl+++L a+gi+v++d ++ +pg  +
  CTQ26543.1 490 QELAEKLYAELSAQGIEVLMDDRKERPGVMF 520
                 789****************999887888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4215.22
//
Query:       CTQ26544.1  [L=235]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-44  150.8   0.0    2.7e-44  150.2   0.0    1.2  1  TrmO      tRNA-methyltransferase O
    1.6e-23   82.6   0.1    2.2e-23   82.1   0.1    1.2  1  TrmO_C    TrmO C-terminal domain
  ------ inclusion threshold ------
      0.091   12.0   0.0       0.13   11.4   0.0    1.1  1  OSK       OSK domain


Domain annotation for each model (and alignments):
>> TrmO  tRNA-methyltransferase O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   0.0   4.4e-48   2.7e-44       2     118 ..      22     142 ..      21     143 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.2 bits;  conditional E-value: 4.4e-48
                 S-SSGGG--.-EEEEEE-HHH..HGGGTTGGG-SEEEEEEE-TTS...-.SS--E-TT-.SS-E.EGGGS--S-SSS-EEEEEEEEEEEE....TTEEE CS
        TrmO   2 iPrqpglaeeaeaeielepeynseealegleefshlwllfvfhenaekklkakvrpprlggnervGvfatRsphRpnpiglsvvklekve....gnvle 96 
                 +Prqpgl+++  +e++l ++yn++ a++gle+fshlw+lfvfh++ e +++++vrpprlggn+r+GvfatRs++Rpnpig+s+v+l+ ++    + +le
  CTQ26544.1  22 VPRQPGLVKHGGGELHLVAPYNQAGAVRGLESFSHLWILFVFHQTMEGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGMSLVELKGIRcqkdQVILE 120
                 8********************************************9*******************************************99987799** PP

                 EES----TT-EEEEEEE--HHH CS
        TrmO  97 vsgvDlldgtpvlDiKPYvpya 118
                 + ++Dl+dgtpv+DiKPY+p+a
  CTQ26544.1 121 LGSLDLVDGTPVVDIKPYLPFA 142
                 *******************975 PP

>> TrmO_C  TrmO C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.1   3.7e-27   2.2e-23       2      65 .]     160     223 ..     159     223 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 3.7e-27
      TrmO_C   2 kleVeFseeaeaqlqqlqksapdlkqlIeevLaqDPRPaYkkskpeeriYgmrLydlnirwrve 65 
                  ++V F++e++aql +l+k++p++k++I+evLaqDPRPaY+k+++  ++Y++ L+d+n+rwrv+
  CTQ26544.1 160 GMNVSFTPEIDAQLLTLEKRYPHIKAFIREVLAQDPRPAYRKEEQAGKTYAVWLLDFNVRWRVT 223
                 599****************************************999****************95 PP

>> OSK  OSK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.3e-05      0.13      63      93 ..     106     136 ..     100     140 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.3e-05
                 HHHT----T-EEEEE--HHHHHTT--HHHHH CS
         OSK  63 rlekielissrvvvnlGsvDilngktlvele 93 
                  l+ i+  +++v+++lGs D++ g ++v+++
  CTQ26544.1 106 ELKGIRCQKDQVILELGSLDLVDGTPVVDIK 136
                 57889999********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1910.65
//
Query:       CTQ26545.1  [L=135]
Description: conserved hypothetical protein; putative outer membrane protein, signal [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-49  165.8   0.1    3.5e-49  165.4   0.1    1.1  1  RcsF      RcsF lipoprotein
  ------ inclusion threshold ------
       0.28   10.3   0.2       0.39    9.8   0.2    1.2  1  DUF5006   Domain of unknown function (DUF5006)


Domain annotation for each model (and alignments):
>> RcsF  RcsF lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.4   0.1   3.9e-53   3.5e-49       3     110 .]      27     133 ..      25     133 .. 0.94

  Alignments for each domain:
  == domain 1  score: 165.4 bits;  conditional E-value: 3.9e-53
        RcsF   3 eqskasklkakkpakpkkakaaapvklykkaeeLlgkpFrdlGevsGesCrsslqdspasiatarkrmqiraaklkanavLlhqCeivsgvagCyqqai 101
                 +qs+a+ + +++p+kp+ a+++apv++y++a+eL+gkpFrdlGevsGesC++s+qdsp++i+tarkr+qi+aa +kanavLlh Ce++sg++gCy+qa+
  CTQ26545.1  27 AQSTATPPVKSEPSKPR-ATRPAPVRIYTDASELVGKPFRDLGEVSGESCQASNQDSPPNIPTARKRLQINAARMKANAVLLHRCEVTSGTPGCYRQAV 124
                 67777888888888776.899****************************************************************************** PP

        RcsF 102 CeGsalkvs 110
                 C Gsal+vs
  CTQ26545.1 125 CLGSALNVS 133
                 *******97 PP

>> DUF5006  Domain of unknown function (DUF5006)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   4.4e-05      0.39       7      21 ..       3      17 ..       1      30 [. 0.88

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 4.4e-05
     DUF5006  7 lLPvcllallltGCe 21
                 LP+cllal l+GC+
  CTQ26545.1  3 ALPICLLALMLSGCS 17
                69************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1086.33
//
Query:       CTQ26546.1  [L=271]
Description: DL-methionine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.2e-101  336.0   1.7   9.3e-101  335.9   1.7    1.0  1  Lipoprotein_9   NLPA lipoprotein
    6.9e-05   22.5   1.2      8e-05   22.3   0.2    1.5  2  OpuAC           Substrate binding domain of ABC-type glycine 
    0.00056   19.6   0.1     0.0014   18.3   0.0    1.6  2  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
  ------ inclusion threshold ------
      0.011   15.7   0.1       0.21   11.5   0.0    2.1  2  NMT1            NMT1/THI5 like
      0.092   12.5   0.0       0.14   11.9   0.0    1.3  1  FMN_red         NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Lipoprotein_9  NLPA lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.9   1.7  2.6e-104  9.3e-101       1     236 []      33     271 .]      33     271 .] 0.99

  Alignments for each domain:
  == domain 1  score: 335.9 bits;  conditional E-value: 2.6e-104
                    EEEEEETTTHHHHHHHHHHHHHTTT.EEEEEEEESSSSHHHHHHHTTSSSEEEEEEHHHHHHHHHHTT-.EEEEEEEEE---EEE-SS-SSGGG-- CS
  Lipoprotein_9   1 lkvGvlsgpeaevlekvkkllkkkg.ldleiveFtdyvqpNkaladgeiDanaFQhlpyLeqfnkekgkklvavgnthvepiglYSkkykslselk 95 
                    +kvGv+ g+e++v+e+++k++k+k+ ld+e+v+F+dyv pN+al++g+iD+naFQh+pyL+q+ k++g+klvavgnt+v+pi+ YSkk+ksl+el+
     CTQ26546.1  33 IKVGVIVGAEQQVAEVAQKVAKEKYgLDVELVTFNDYVLPNEALSKGDIDVNAFQHKPYLDQQIKDRGYKLVAVGNTFVYPIAGYSKKIKSLDELQ 128
                    89********************************************************************************************** PP

                    TT-EEEEESSHHHHHHHHHHHHHTTSSEE-TT-CTT--GGGEEE-TT--EEEEE-GGGHHHHGGT..SSEEEE-HHHHHHTT--HHHH-SEE-SST CS
  Lipoprotein_9  96 eGatiavpndpsnegRaLllLekagLikLkdgkgllatvkdIteNpknLkikeleaaqlpraldd..vdaavintnyalkagldpkkdalfeedkd 189
                     G++iavpndp+n gR LllL++ gLikLkdg gll t  dI+eNpknLki elea qlpr+ldd  +++avint+ya++ gl+p kd++f+e k+
     CTQ26546.1 129 PGSQIAVPNDPTNLGRSLLLLQQVGLIKLKDGVGLLPTSLDIVENPKNLKIVELEAPQLPRSLDDaqIALAVINTTYASQIGLTPAKDGIFVEGKE 224
                    *****************************************************************88999************************** PP

                    SSG-EEEEEETTCTTSHHHHHHHHHHTSHHHHHHHHHHTTTSSEE-S CS
  Lipoprotein_9 190 spyvniivvrekdkddeavkklveayqseevkkaiekkykgavvpaw 236
                    spyvn+iv+re++kd+e+vkk+v+ayqs+ev++a++k ++g++v++w
     CTQ26546.1 225 SPYVNLIVAREDNKDAENVKKFVQAYQSDEVYEAANKIFNGGAVKGW 271
                    ********************************************998 PP

>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.2   2.2e-08     8e-05       2     108 ..      32     127 ..      31     145 .. 0.76
   2 ?   -3.2   0.0       1.4   5.1e+03     206     227 ..     230     251 ..     215     261 .. 0.64

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.2e-08
                 EEEEEEESSHHHHHHHHHHHHHHHHT.TEEEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHHHHHHHHHHHHHHEEEEEEEESEEECEEEEEEHHHHHH CS
       OpuAC   2 tivigsknwteqevlaeilkqllekk.GykveltnlgstavlfaalasGdiDvypeewtgtayeaykkaveekkglevlgplgagnteglavpkyvaek 99 
                 +i++g+   +eq+v ae+++++ ++k G++vel++++ ++   +al++GdiDv +    + +++++k+   ++++l++     +gnt  + +  y    
  CTQ26546.1  32 HIKVGVIVGAEQQV-AEVAQKVAKEKyGLDVELVTFNDYVLPNEALSKGDIDVNAFQHKPYLDQQIKD---RGYKLVA-----VGNTFVYPIAGYS--- 118
                 57888888888876.788888888888****************************9999999888887...4445553.....4555555555555... PP

                 HTTTBHHHH CS
       OpuAC 100 ygiksisDL 108
                 ++iks+++L
  CTQ26546.1 119 KKIKSLDEL 127
                 556666655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.4
                 EEEEHHHHHHSCTHHHHHHHHC CS
       OpuAC 206 pvvrkefaekaPevaafLekls 227
                 ++v +e  ++a +v++f+++++
  CTQ26546.1 230 LIVAREDNKDAENVKKFVQAYQ 251
                 4444444555556666666544 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.9e-07    0.0014      15     112 ..      44     137 ..      40     154 .. 0.86
   2 ?   -2.0   0.0      0.63   2.2e+03      81     100 ..     222     243 ..     195     253 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.9e-07
                     HHHHHHHHHHHHH.SSEEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS.-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHH.GG- CS
  Phosphonate-bd  15 ayqpladyLseel.GvevelvvatdyaavvealragqvDiaflgplayvqardqa.gveplatrvrsdGsasyrsviivradsdiqsledL.kgk 106
                     + +++a+ + +e  G +velv+++dy    eal+ g +D+  ++  +y+  + ++ g++++a+          + + i++ + +i+sl++L  g 
      CTQ26546.1  44 QVAEVAQKVAKEKyGLDVELVTFNDYVLPNEALSKGDIDVNAFQHKPYLDQQIKDrGYKLVAVGNT-------FVYPIAGYSKKIKSLDELqPGS 131
                     56666766666666**************************************99879999999986.......8999999999999999998899 PP

                     EEEE-- CS
  Phosphonate-bd 107 tiafvs 112
                     +ia++ 
      CTQ26546.1 132 QIAVPN 137
                     998875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.63
                     -.-SEEEEEEEEETTSS.--SH CS
  Phosphonate-bd  81 G.sasyrsviivradsd.iqsl 100
                     G ++ y  +i++r+d++  +++
      CTQ26546.1 222 GkESPYVNLIVAREDNKdAENV 243
                     3346788888888887545554 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     6e-05      0.21      18      76 ..      56     116 ..      55     156 .. 0.81
   2 ?    2.2   0.0     0.041   1.5e+02     177     203 ..     227     251 ..     173     259 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6e-05
                 HTTEEEEEE--SSTTHHHHHHHCTS-SE.EEE-HHHHHHH.HHTT--EEEEEEEE-S--EE CS
        NMT1  18 eeGldVeivepadpsdatelvasgkadf.gvsyqesllaa.rakglpvvsvaallqeplsg 76 
                 + GldVe+v  +d   + e++ +g+ d+ ++++++ l ++ +++g+++v+v++ +  p  g
  CTQ26546.1  56 KYGLDVELVTFNDYVLPNEALSKGDIDVnAFQHKPYLDQQiKDRGYKLVAVGNTFVYPIAG 116
                 57**************************999999999866266*********998666555 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.041
                 -SEEEEEEHHHHHH-HHHHHHHHHHHH CS
        NMT1 177 yslvlitnekllkenpelvkkFlrAlk 203
                 y +++++ e+  ++  e vkkF++A++
  CTQ26546.1 227 YVNLIVAREDNKDA--ENVKKFVQAYQ 251
                 55678888887666..9********97 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.9e-05      0.14       8      53 ..      40      81 ..      11      99 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.9e-05
                S--STT-HHHHHHHHHHCCT-T..T-CEEEEETTTS.--...---HCH CS
     FMN_red  8 GSlrkgsntrklaewaaealkea.gaevelidladlilpc.alcdkdl 53
                G        +++ae+a++ +ke+ g++vel++ +d+ lp  al ++d 
  CTQ26546.1 40 G------AEQQVAEVAQKVAKEKyGLDVELVTFNDYVLPNeALSKGDI 81
                4......3579***********999***********999765555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2146.30
//
Query:       CTQ26547.1  [L=217]
Description: DL-methionine transporter subunit; membrane component protein of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-20   73.8  19.0    1.4e-20   73.8  19.0    1.3  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8  19.0   7.8e-25   1.4e-20       1     179 [.      31     214 ..      31     217 .] 0.84

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 7.8e-25
  BPD_transp_1   1 gillGilaa......lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralG 91 
                   g+++G+l+          n kl + l+ l+++++s+P+++l++ ++ +  ++ +   +  ++i+ l+++aap++ +++++al ++p++l+ea+ra+G
    CTQ26547.1  31 GLPVGVLLYvtrpgqIVANAKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 127
                   56667777666666677899********************666666544555566667888************************************ PP

  BPD_transp_1  92 asrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllle.ailgydyseisnggvlalviavlllnlvadilqrll 179
                   a++ qi+rkv+lP alp ++  + ++++ l+g +++   +g++ Glg+   +  ++gy+ + ++ ++++ lv++v l+ ++ d ++r++
    CTQ26547.1 128 ATPLQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG-GLGQIGYQyGYIGYNATVMN-TVLVLLVVLVYLIQFSGDRIVRAV 214
                   *****************************************66.68877666245555555555.999999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1666.91
//
Query:       CTQ26548.1  [L=343]
Description: DL-methionine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-37  127.5   0.0    8.2e-37  126.8   0.0    1.4  1  ABC_tran     ABC transporter
    9.3e-20   70.3   0.0    1.8e-19   69.4   0.0    1.5  1  NIL          NIL domain
    2.5e-09   37.4   0.3    0.00019   21.4   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    6.8e-07   28.9   0.0    1.4e-06   27.9   0.0    1.5  1  SMC_N        RecF/RecN/SMC N terminal domain
      4e-05   23.9   0.6    0.00025   21.3   0.6    2.0  1  AAA_22       AAA domain
    0.00051   20.5   1.4      0.001   19.4   0.5    1.9  2  AAA_16       AAA ATPase domain
     0.0055   16.4   0.0      0.012   15.3   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
     0.0076   15.8   0.0        2.9    7.4   0.0    2.8  3  AAA_25       AAA domain
  ------ inclusion threshold ------
      0.015   15.2   0.1      0.029   14.3   0.1    1.5  1  RsgA_GTPase  RsgA GTPase
      0.026   14.8   0.1       0.22   11.8   0.1    2.2  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
      0.027   13.9   0.0       0.57    9.6   0.0    2.3  2  TniB         Bacterial TniB protein
      0.039   14.0   0.3        0.2   11.7   0.3    2.2  1  MMR_HSR1     50S ribosome-binding GTPase
      0.079   11.7   0.1        3.1    6.5   0.0    2.3  2  ABC_ATPase   Predicted ATPase of the ABC class
      0.093   11.7   0.0       0.16   10.9   0.0    1.3  1  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
       0.14   12.7   0.1       0.24   11.9   0.1    1.4  1  AAA_23       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   0.0   6.9e-40   8.2e-37       1     137 []      21     169 ..      21     169 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.8 bits;  conditional E-value: 6.9e-40
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren.............esde 83 
                 l+nvsl++ +g++++++G +GaGKStL++++  l++pteG++++dg++l+    +el+++r++ig+++q+ +l    tv  n             e ++
  CTQ26548.1  21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVQVDGQELTAlseKELTRARRQIGMIFQHFNLLASRTVFGNvalpleldntpqaEIKR 119
                 79************************************************9999****************99999999*************99999999 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++++l+ +gl +++d+      ++LSgGqkqrva+aral+++pk+ll+DE+t+
  CTQ26548.1 120 RVTELLDLVGLGDKHDSYP----ANLSGGQKQRVAIARALASNPKVLLCDEATS 169
                 9999999999999666665....*****************************96 PP

>> NIL  NIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   1.5e-22   1.8e-19       2      73 .]     268     339 ..     267     339 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 1.5e-22
                 EEEEEEES-S-SS-HHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTT-EEEE CS
         NIL   2 lirltftgksavePllshlvrqlglevnIlqGsveriqgtpfGqlvielsgsqesiaaalqylrkrnvdvEv 73 
                 ++r  ftg s++ Plls+ +r+++++ nI+++++++ +g +fG ++ e+ g+qe+ +aa+++l++++v+vEv
  CTQ26548.1 268 MLRMEFTGHSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQEDTQAAIAWLQEHHVKVEV 339
                 589********************************************************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.6e-05     0.031       2      24 ..      34      56 ..      33      87 .. 0.81
   2 !   21.4   0.0   1.6e-07   0.00019     227     298 ..     131     200 ..      98     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllar 24
                 ++iG+ g+GKS+L+++  ll r
  CTQ26548.1 34 YGVIGASGAGKSTLIRCVNLLER 56
                689***************99954 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 1.6e-07
      AAA_21 227 gdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 gd ++  +++lS G+k+  a++ al++ +   ++ll DE  + L+P+ +r++lellk+ +r  g  ++l TH 
  CTQ26548.1 131 GDKHDSYPANLSGGQKQRVAIARALASNP---KVLLCDEATSALDPATTRSILELLKDINRrLGLTILLITHE 200
                 45555566899******999999999988...9***********************555555**********6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.2e-09   1.4e-06      25     213 ..      32     215 ..       7     222 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.2e-09
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTT..TTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersak..klrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkk 121
                 ++  ++G+ G+GKs l+  +  +L   +    ++  ++l++l  k   +    + ++ ++f++ +     ++   ++   ++ +++ + +i+++  +  
  CTQ26548.1  32 QIYGVIGASGAGKSTLIRCV-NLLERPTEGsvQVDGQELTALSEK---ELTRARRQIGMIFQHFNLL-ASRTVFGNVALPLELDNTPQAEIKRRVTELL 125
                 46789***************.556544333003444445555444...4444444555555555443.3334446788888889999999********* PP

                 HHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgvtk 213
                 ++  l  +++ ++ +LSgG+k+ va+a  +A +   p+ + l De  +aLD + ++ + ellk  + +    ++ i+++ +++++   +v v +
  CTQ26548.1 126 DLVGLGDKHDSYPANLSGGQKQRVAIARALASN---PK-VLLCDEATSALDPATTRSILELLKDINRRlgLTILLITHEMDVVKRICDCVAVIS 215
                 ***************************998864...44.4578********************655543388999****999999988888876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.6   2.1e-07   0.00025       7     131 ..      33     200 ..      30     207 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.1e-07
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee...................erpevvfvtlpsst..sskdllrellralglelka.............. 70 
                 i  v+G sG+GK+tl+r +           e                   + ++++ +  ++ +   s++++ +++  l+l++                
  CTQ26548.1  33 IYGVIGASGAGKSTLIRCVNLLERPT----EgsvqvdgqeltalsekeltRARRQIGMIFQHFNllASRTVFGNVALPLELDNTPqaeikrrvtelldl 127
                 6669*************998876322....234668788888888888884444444444444444444444444444444444466666666666666 PP

      AAA_22  71 ............erlsseellealeqalraravielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvGtp 131
                             +    +  + a+++al +   +++l+ DEa   l+   +  +le L+++    r g++++L+ ++
  CTQ26548.1 128 vglgdkhdsypaNLSGGQKQRVAIARALASN--PKVLLCDEATSaLDpatTRSILELLKDINR--RLGLTILLITHE 200
                 6666666774443333333334444444444..66*********9988755999999999999..999999998765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.5   8.8e-07     0.001      11     164 ..      20     188 ..      15     197 .. 0.45
   2 ?   -2.1   0.0       3.7   4.4e+03     106     157 ..     270     329 ..     218     334 .. 0.49

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 8.8e-07
      AAA_16  11 qLlsalervrsgrpelvllsGesGvGKsslvrellralekd.........................ggiflrgkcdqlesaipysalaqalareellrq 84 
                 +L+++   v +g  ++  ++G+sG GKs+l+r++   le+                           +  + +++  l       a  +++  +  l  
  CTQ26548.1  20 ALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVN-LLERPtegsvqvdgqeltalsekeltrarrQIGMIFQHFNLL-------ASRTVF-GNVALPL 107
                 454444455555..68889***************9.788885444444333222222222222221122222222222.......222222.3344444 PP

      AAA_16  85 lldeaesaeleawrekleeala.......avpelagaeasrllellkrllallsrderplvlvlDdlq.wadeaslql.laaLlrlles 164
                 +ld++ +ae  +  ++l++ ++         ++l+g   +  + +++r+l  +s    p vl++D++   +d+a+    l++L +  ++
  CTQ26548.1 108 ELDNTPQAEIKRRVTELLDLVGlgdkhdsYPANLSGG--QKQRVAIARAL--AS---NPKVLLCDEATsALDPATTRSiLELLKDI-NR 188
                 4444444444444444444444555444422222222..22222222333..23...35577777777444555555524444443.33 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.7
      AAA_16 106 a........avpelagaea...srllellkrllallsrderplvlvlDdlqwadeaslqllaa 157
                 +        ++p l+   a   +  ++ +++ ++++    + + + l +++  +e++++++a 
  CTQ26548.1 270 RmeftghsvDAPLLSET-ArrfNVNNNIISAQMDYAGG-VK-FGIMLTEMHGTQEDTQAAIAW 329
                 14444443222222222.23444444555555555554.44.666666666666666666655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     1e-05     0.012      17      41 ..      26      50 ..      19      61 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1e-05
      AAA_29 17 ieidlkg.atlltGpsGsGKSTllDA 41
                +++  +g ++ ++G+sG+GKSTl+  
  CTQ26548.1 26 LHVP-AGqIYGVIGASGAGKSTLIRC 50
                5554.4448889***********955 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0025       2.9      26      50 ..      24      48 ..       6      53 .. 0.85
   2 ?    5.3   0.0     0.011        13     164     188 ..     175     199 ..     112     201 .. 0.87
   3 ?   -2.6   0.0       2.8   3.4e+03     115     136 ..     312     333 ..     301     340 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0025
      AAA_25 26 vkgllpagelallaGapgtGKttla 50
                v  ++pag +  ++Ga+g+GK+tl 
  CTQ26548.1 24 VSLHVPAGQIYGVIGASGAGKSTLI 48
                66689******************95 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.011
      AAA_25 164 dvgalvealeriarrtgaavllvhH 188
                  +++++e l++i rr+g ++ll+ H
  CTQ26548.1 175 TTRSILELLKDINRRLGLTILLITH 199
                 348999******************* PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.8
      AAA_25 115 pLfakdrggtlltadvdaleaa 136
                 +L+++   ++ ++a++++l+++
  CTQ26548.1 312 MLTEMHGTQEDTQAAIAWLQEH 333
                 4444333333345555555444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   2.4e-05     0.029      88     119 ..      19      51 ..       3      74 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-05
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinal 119
                  ++l++++ ++   ++  ++G SG+GKStLi  +
   CTQ26548.1  19 QALNNVSLHVPAgQIYGVIGASGAGKSTLIRCV 51 
                  45555555554449999************9765 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00018      0.22      33      89 ..     141     184 ..     131     185 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
     SbcCD_C  33 lSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 lSGG+kq    +a    +a ++ s      ++++++ DEA s lD+ +++++lell+
  CTQ26548.1 141 LSGGQKQR---VA----IARALAS------NPKVLLCDEATSALDPATTRSILELLK 184
                 56666632...22....2233333......588999*******************97 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.12   1.4e+02      37      54 ..      33      50 ..       9      68 .. 0.72
   2 ?    9.6   0.0   0.00047      0.57     106     160 ..     145     197 ..     113     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.12
        TniB 37 nlllvGdsnnGKtmivek 54
                 + ++G s  GK+++++ 
  CTQ26548.1 33 IYGVIGASGAGKSTLIRC 50
                46689**********985 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00047
        TniB 106 kleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                 ++++ +++   + +++vL+ DE  ++l     + r +l++lk ++++l ++i l+
  CTQ26548.1 145 QKQRVAIARALASNPKVLLCDEATSAL--DPATTRSILELLKDINRRLGLTILLI 197
                 55556666666789*************..88999**************9999876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   0.00017       0.2       3      20 ..      35      52 ..      33     211 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
                EEEESTTSSHHHHHHHHH CS
    MMR_HSR1  3 aivGrpNvGKStLinalt 20
                +++G + +GKStLi+   
  CTQ26548.1 35 GVIGASGAGKSTLIRCVN 52
                79************9653 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.028        34     241     264 ..      27      51 ..      21      88 .. 0.81
   2 ?    6.5   0.0    0.0026       3.1     321     352 ..     139     170 ..     130     216 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.028
                 EE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAl 264
                  +p G +  ++G    GKsTL++ +
  CTQ26548.1  27 HVPAGqIYGVIGASGAGKSTLIRCV 51 
                 588999999************9875 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0026
                 SS--HHHHHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 321 edASGStsqAanimealeagakllLiDEDtsA 352
                 ++ SG   q ++i++al  + k+lL DE tsA
  CTQ26548.1 139 ANLSGGQKQRVAIARALASNPKVLLCDEATSA 170
                 6779***************************9 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014      0.16       5      49 ..       7      51 ..       4      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
                HHHHH--SHHHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHH CS
        MeaB  5 itlveserpeakellerllakaGraqvvGltGvPGaGkstlveal 49
                it v ++  ++ + l++++ +    q  G+ G  GaGkstl+  +
  CTQ26548.1  7 ITKVFQQGNRSIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV 51
                7888888889999999999999999****************9765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1    0.0002      0.24      20      41 ..      32      53 ..       2      54 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0002
      AAA_23 20 gltlItGpNGaGKTTildAikl 41
                 ++ ++G  GaGK+T+++++ l
  CTQ26548.1 32 QIYGVIGASGAGKSTLIRCVNL 53
                678899************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 2611.09
//
Query:       CTQ26549.1  [L=188]
Description: D,D-heptose 1,7-bisphosphate phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-13   50.2   0.1      4e-13   49.2   0.1    1.5  1  Hydrolase_like  HAD-hyrolase-like
    4.8e-11   43.1   0.1    1.3e-05   25.4   0.0    2.2  2  HAD_2           Haloacid dehalogenase-like hydrolase
      4e-08   33.8   0.1    2.5e-07   31.2   0.0    2.2  2  Hydrolase       haloacid dehalogenase-like hydrolase
    2.1e-07   30.8   0.0    4.2e-07   29.8   0.0    1.4  2  PNK3P           Polynucleotide kinase 3 phosphatase
      3e-05   24.1   0.0    0.00013   22.0   0.0    1.9  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.1   1.1e-16     4e-13       2      75 .]     109     179 ..     108     179 .. 0.93

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.1e-16
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EE.EEESSSSS-TTTHHHHHHHHT---SEEES- CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwks.vLVltGvtrpedleepehkptyvaddlaea 75 
                     ++KP+p+m+ +a+  l++d ++++m+GD+   D+++A +a + + vLV+tG+   e++e    ++++v+++lae+
      CTQ26549.1 109 CRKPHPGMLISARDYLHIDMAASYMVGDK-LEDMQAAAAADVGTkVLVRTGKPLTEEAE---KAADWVLNSLAEL 179
                     89***************************.***********9988*******8887755...5689****99985 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.3e-06     0.012      75     106 ..      25      57 ..      13      73 .. 0.82
   2 !   25.4   0.0   3.6e-09   1.3e-05     132     174 ..     108     150 ..     102     154 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.3e-06
       HAD_2  75 k.kevkpydgvkelLeeLkeagyklgivTsksr 106
                 + ++++++dgv++++ eLke+gy l +vT++s 
  CTQ26549.1  25 EiDNFEFIDGVIDAMRELKEMGYALVLVTNQSG 57 
                 334799***********************9875 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 3.6e-09
       HAD_2 132 ekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagik 174
                   +KP+p ++  a + l+++ +   +vGD+  D++aa +a + 
  CTQ26549.1 108 DCRKPHPGMLISARDYLHIDMAASYMVGDKLEDMQAAAAADVG 150
                 568***********************************99875 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.57     2e+03       3      13 ..       7      17 ..       5      26 .. 0.76
   2 !   31.2   0.0   6.9e-11   2.5e-07     115     210 .]      27     148 ..      18     148 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.57
                EEEEESBTTTB CS
                xxxxxxxxxxx RF
   Hydrolase  3 tvvfDkdGTLt 13
                ++++D dGT+ 
  CTQ26549.1  7 AIFLDRDGTIN 17
                899******96 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 6.9e-11
                 HTHHBHTTHHHHHHHHHHTTEEEEEEESSEH...............HHHH.HHHHH.TT..GGGE.SEEEEHHCES......STTTSHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxx.xxxxx.xx..xxxx.xxxxxxxxxx......xxxxxxxxxxxxxxxxx RF
   Hydrolase 115 dplkvkpeaaeavasLkaagievvlltgdnp...............etae.raanq.lG..ddyf.daviasdiet......vakpspegkvaaireLq 187
                 d+ +  +++ +a+++Lk++g+ +vl+t+++                e  + ++a++ ++    y+  ++ ++ +e+      + kp+p ++  a + L 
  CTQ26549.1  27 DNFEFIDGVIDAMRELKEMGYALVLVTNQSGiargkfteaqfetltEWMDwSLADRgVDldGIYYcPHHPQGAVEEyrqtcdCRKPHPGMLISARDYLH 125
                 5556678999*****************99889999998988988886666666666666873444455555555556888******************* PP

                 STGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 188 gkpeevamVGDgvnDaaalaaAg 210
                 ++ +   mVGD + D++a+aaA+
  CTQ26549.1 126 IDMAASYMVGDKLEDMQAAAAAD 148
                 **********************8 PP

>> PNK3P  Polynucleotide kinase 3 phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.2e-10   4.2e-07      22     127 ..      24     137 ..       7     151 .. 0.77
   2 ?   -2.6   0.0       1.1   3.9e+03      14      31 ..     157     175 ..     144     187 .. 0.62

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.2e-10
       PNK3P  22 kdaddwkllsesvlekLkklkeegykivifsNqggvvek.ktkkslekfkekieallkeldvpll.vyaatkk...........dkyRKPetGmweelk 107
                 ++ d++++++  v++ +++lke gy +v+++Nq+g+++   t+ ++e+++e ++  l++ +v+l  +y  +++              RKP++Gm+    
  CTQ26549.1  24 HEIDNFEFID-GVIDAMRELKEMGYALVLVTNQSGIARGkFTEAQFETLTEWMDWSLADRGVDLDgIYYCPHHpqgaveeyrqtCDCRKPHPGMLISAR 121
                 3568899987.69************************97678889999999999888888888643777777778888888876369*******97654 PP

       PNK3P 108 kdleekleidkeksfyvGDa 127
                 +     l+id+  s+ vGD 
  CTQ26549.1 122 DY----LHIDMAASYMVGDK 137
                 43....34899999999996 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.1
       PNK3P  14 tks.gkefakdaddwklls 31 
                 t +  +e+a++a+dw l s
  CTQ26549.1 157 TGKpLTEEAEKAADWVLNS 175
                 4443455566788888754 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   3.7e-08   0.00013       2      49 ..       9      65 ..       8      72 .. 0.87
   2 ?   -0.7   0.0      0.44   1.6e+03      79      97 ..     146     167 ..     115     169 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 3.7e-08
                 EEESTTTSE.........ETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHH CS
  Hydrolase_6  2 lfDidGvLw.........rgdkaipgaaealnalraagkpvvllTNnsskseeeyak 49
                 ++D dG++          ++ + i+g+ +a++ l+++g+ +vl+TN+s+  + ++ +
   CTQ26549.1  9 FLDRDGTINvdhgyvheiDNFEFIDGVIDAMRELKEMGYALVLVTNQSGIARGKFTE 65
                 68889999888888877779999***************************9998875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.44
                  X...XXEEEEESXHHHHHHHHH CS
  Hydrolase_6  79 a...dkkvlvigeeglreelke 97 
                  a   + kvlv  +++l ee+++
   CTQ26549.1 146 AadvGTKVLVRTGKPLTEEAEK 167
                  0344778888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1520.98
//
Query:       CTQ26550.1  [L=267]
Description: aldehyde reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-53  181.8   0.3    2.7e-51  174.5   0.3    2.0  1  Aldo_ket_red     Aldo/keto reductase family
  ------ inclusion threshold ------
      0.034   14.4   0.3       0.63   10.3   0.0    2.9  4  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.13   12.7   0.6        1.6    9.3   0.0    2.4  2  GlutR_dimer      Glutamyl-tRNAGlu reductase, dimerisation dom


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.5   0.3   4.6e-55   2.7e-51       4     292 ..       8     250 ..       5     251 .. 0.94

  Alignments for each domain:
  == domain 1  score: 174.5 bits;  conditional E-value: 4.6e-55
                   EE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT-S CS
  Aldo_ket_red   4 lGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLgtd 100
                   lGt +       +++ +++ +++ale G++++DtA++Y    +e  +G+a+++s+++r+e++i+tK+      + ++lsk+ +++sl+esl++L+td
    CTQ26550.1   8 LGTFR------LKDDVVIASVKTALELGYRAIDTAQIY---DNEAAVGQAIAESGVPRDELFITTKI------WIENLSKDKLIASLQESLQKLRTD 89 
                   34443......457899999******************...**************************......************************ PP

                   -EEEEEE-S--TTS-..HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH.HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGG CS
  Aldo_ket_red 101 yvDllllHrpdpslp.sieevldaleelvkeGkiraiGvSnfsveqleka.kkkkkvkivavqveynllreleeegllelckkkgvpliaysplggG 195
                   yvDl l+H+p p++   +ee ++al e +k G+ r+iG+Snf++  +e+a  + +   i+++q+e +++  l+++++++ ++++g+ +  y++l+ G
    CTQ26550.1  90 YVDLTLIHWPSPNDAvAVEEFMAALMEAKKLGLTRQIGISNFTIPLMERAiAAVGAENIATNQIELSPY--LQNRKVVDWAREHGIHITSYMTLAYG 184
                   ************99889*********************************88888888***********..************************87 PP

                   TTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 196 lltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                                                   ++e + ++a++h+ ++aq+ l++a+    +  vip++++ + l  nl+al+l+l++e+ +++++l
    CTQ26550.1 185 KAL-----------------------------KDEVIARIAAKHNATPAQVILAWAM--GEGYAVIPSSTKRDNLASNLKALDLRLDDEDRQAIAAL 250
                   655.............................7899*********************..*******************************9999876 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.23   1.4e+03      86     125 ..      22      52 ..      18      56 .. 0.70
   2 ?   -1.9   0.0      0.64   3.8e+03      91     121 ..      85     117 ..      69     124 .. 0.61
   3 ?   10.3   0.0   0.00011      0.63      74     115 ..     153     191 ..     109     206 .. 0.79
   4 ?    0.0   0.0      0.16   9.6e+02      13      58 ..     192     243 ..     189     256 .. 0.58

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.23
                      HHHHHHHT-EEEESS-BCGCCSCHCCSHHHHHTHHHHHHC CS
  Sacchrp_dh_NADP  86 lkaCietgvhyvdtsiskeertnyalreavlklkekakea 125
                      +k+++e g + +dt+          ++++  +  ++ +e+
       CTQ26550.1  22 VKTALELGYRAIDTAQ---------IYDNEAAVGQAIAES 52 
                      7899999999999887.........555555555555555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.64
                      HHT-EEEE.SS-.BCGCCSCHCCSHHHHHTHHH CS
  Sacchrp_dh_NADP  91 etgvhyvd.tsi.skeertnyalreavlklkek 121
                      + +++yvd t i  ++ + + a++e + +l e+
       CTQ26550.1  85 KLRTDYVDlTLIhWPSPNDAVAVEEFMAALMEA 117
                      567788885333545555666666666666555 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00011
                      EE-SSGGGHHHHHHHHHHHT-E...EEESS-BCGCCSCHCCSHHH CS
  Sacchrp_dh_NADP  74 vnlsppissldvlkaCietgvh...yvdtsiskeertnyalreav 115
                      + lsp+ ++++v+++++e+g+h   y++ ++       +al+++v
       CTQ26550.1 153 IELSPYLQNRKVVDWAREHGIHitsYMTLAY------GKALKDEV 191
                      889******************9333444666......44555544 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.16
                      HHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH......TTTCEEEEE--TTT CS
  Sacchrp_dh_NADP  13 vaellarhfdvdaeitvadrskeklealaaka......lgvrfeaialdaen 58 
                      +a+  a+h+  +a++++a    e+ + + +++      ++ ++    ld e+
       CTQ26550.1 192 IARIAAKHNATPAQVILAWAMGEGYAVIPSSTkrdnlaSNLKALDLRLDDED 243
                      5666666666666777777766666666655555554444444444444444 PP

>> GlutR_dimer  Glutamyl-tRNAGlu reductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00026       1.6      14      66 ..      64     115 ..      57     121 .. 0.92
   2 ?    1.0   0.1       0.1     6e+02      37      61 ..     224     250 ..     221     251 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00026
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S..--------TTHHHHHH CS
  GlutR_dimer  14 eawlkslevvptIkalrekaeeireeeleralkklaldgedreelekltrslv 66 
                  + w+++l+ +++I++l+e+++++r + ++ +l + + + +d+ ++e+++ +l+
   CTQ26550.1  64 KIWIENLSKDKLIASLQESLQKLRTDYVDLTLIHWP-SPNDAVAVEEFMAALM 115
                  5699********************************.*****99****99997 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.1
                  HHHHHHHHHS-S....--------TTH CS
  GlutR_dimer  37 reeeleralkkla..ldgedreelekl 61 
                  +++ l+  lk l+  ld+edr+++ +l
   CTQ26550.1 224 KRDNLASNLKALDlrLDDEDRQAIAAL 250
                  6788999999999999*****998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1987.19
//
Query:       CTQ26551.1  [L=301]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-45  153.8   0.0    5.9e-45  153.2   0.0    1.3  1  LysR_substrate  LysR substrate binding domain
    8.7e-22   76.8   1.8    3.5e-21   74.9   1.2    2.2  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.02   14.4   0.0       0.12   12.0   0.1    2.2  2  HTH_24          Winged helix-turn-helix DNA-binding
       0.06   13.3   1.6       0.12   12.3   1.6    1.4  1  CHASE3          CHASE3 domain
      0.084   12.8   0.1        0.2   11.5   0.1    1.7  1  MarR_2          MarR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2   0.0   1.7e-48   5.9e-45       3     208 ..      90     293 ..      88     294 .. 0.94

  Alignments for each domain:
  == domain 1  score: 153.2 bits;  conditional E-value: 1.7e-48
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSE CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gepv 96 
                      +rg Lr+ a + +  ++l+pl++ fr+ryPe +l+lv+++  ++++l+++  +D+airag ++ds+l+arpL++  + +vaspd+  ar g p 
      CTQ26551.1  90 TPRGLLRVDAATPVMLHFLMPLVKPFRERYPEMTLSLVSSE--TFINLIERK-VDVAIRAGTLTDSSLRARPLFTSYRKIVASPDY-VARyGMPQ 180
                     69************************************999..****55555.*********************************.******** PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESST..TCEEEEEEEEET CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpep..plprelylvyrk 189
                     +++dL+++ ++ ++e+ +l  +    ++ + l++++a+++ns e+l++l++ G Gia+l++++v++e+a+g+ v   l++   p+++++++vy +
      CTQ26551.1 181 HPSDLKQHHCLGFTEPVSLNTWPVSCCDGQLLEIEAAVSSNSGETLKQLCLTGNGIACLSDYMVDKEIASGEFV-ELLADKrlPVEMPFSAVYYS 274
                     **************99999999999*************************************************.66666645666********* PP

                     TCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidflreal 208
                     +r  s ++rafidfl +++
      CTQ26551.1 275 DRAVSTRIRAFIDFLSDHV 293
                     ***************9875 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   1.2   9.8e-25   3.5e-21       3      60 .]       7      64 ..       5      64 .. 0.97
   2 ?   -0.6   0.0      0.36   1.3e+03      23      36 ..     271     284 ..     269     296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 9.8e-25
                HHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  3 qlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                 +++fvav+e+gsf+rAAe+Lg + +avsr++k+LE+ lgv L++Rt+r+l+LTe+Ge
  CTQ26551.1  7 EIAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLESKLGVSLLNRTTRQLSLTEEGE 64
                6899*****************************************************7 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.36
                 HTS-HHHHHHHHHH CS
       HTH_1  23 Lglsqpavsrqikr 36 
                 +++s  avs +i++
  CTQ26551.1 271 VYYSDRAVSTRIRA 284
                 67899999*99997 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.2e-05      0.12      24      44 ..      24      44 ..      19      44 .. 0.91
   2 ?   -0.8   0.0      0.31   1.1e+03      27      42 ..     271     286 ..     270     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.2e-05
      HTH_24 24 AerlglSpstvnrrlkrLeee 44
                Ae+lg   s+v+r +k+Le++
  CTQ26551.1 24 AEQLGQANSAVSRAVKKLESK 44
                9******************85 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.31
      HTH_24  27 lglSpstvnrrlkrLe 42 
                 +  S  +v++r++ ++
  CTQ26551.1 271 VYYSDRAVSTRIRAFI 286
                 5678899******987 PP

>> CHASE3  CHASE3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.6   3.2e-05      0.12      69     136 ..      24      89 ..      16      90 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.2e-05
      CHASE3  69 qerldrlealieqklaeleetialrreggleaalalvrsdegkelmdeiraliaemrdeerrllaqre 136
                 +e+l ++++++ + ++ le  + +     +++ ++l  ++eg +++ +++  ++em ++e++ll+ r+
  CTQ26551.1  24 AEQLGQANSAVSRAVKKLESKLGVSLL--NRTTRQLSLTEEGERYFRRMQVVLQEMAAAENDLLETRT 89 
                 567777777777777777777555554..458999******************************997 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.7e-05       0.2      23      48 ..      19      44 ..       4      44 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.7e-05
                EHHHHHHHHTSSHHHHHHHHHHHHHT CS
      MarR_2 23 tvgelarrlglsksavsrilkrLvaa 48
                + +  a+ lg   savsr++k+L+++
  CTQ26551.1 19 SFSRAAEQLGQANSAVSRAVKKLESK 44
                67889******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2385.57
//
Query:       CTQ26552.1  [L=396]
Description: Uncharacterized MFS-type transporter YtbD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-49  167.3  72.9    1.2e-39  136.3  46.0    2.0  2  MFS_1     Major Facilitator Superfamily
    1.2e-13   51.2  43.6    1.4e-13   50.9  43.6    1.0  1  MFS_4     Uncharacterised MFS-type transporter YbfB
    2.9e-09   36.3  37.8    5.7e-08   32.0  14.2    3.2  3  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3  46.0     2e-43   1.2e-39       2     329 ..       9     319 ..       8     327 .. 0.87
   2 !   44.7  18.9   1.3e-15     8e-12      28     171 ..     232     379 ..     227     395 .. 0.78

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 2e-43
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlga 99 
                  ++af ++++ +++  ++p ++a++l is  ++gll+++yalg a+++++l +l+ r+ r+ +ll+ ++lf +g  +l++  +++ +ll++r+l+Gl+ 
  CTQ26552.1   9 TIGAFAIGTTEFVIVGLVP-TIAQQLSISLPSAGLLVSIYALGVAIGAPVLTALTGRMPRKQLLLALMVLFTAG-NVLAWQaPGYETLLLARLLTGLAH 105
                 689****************.**************************************7777************.55555439988************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 g++f++g ++++ +++ke+ ++ai+++ +g  ++ + g ++g ++ +++gWr +f+++ i++++a++  lll+p + p r+  s +++           
  CTQ26552.1 106 GVFFSIGSTIATSLVAKEKAASAIAIMFGGLTVALVTGVPFGTFIGQHFGWRETFLAVSILGVIALISSLLLVPNNIPGRASASLRDQ----------- 193
                 *****************************************************************99555888888888888777777........... PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglal 293
                  +k l +++ l+i+ i++l+ + +f+++++l p+ +qe  g+s    +++l+g  ++++ ++g    +++g+l+d+ g+  +l +++++l+l++l + l
  CTQ26552.1 194 -LKVLTHPRLLMIYAITALGYGGVFTAFTFLAPM-MQELAGFSpsavSWILLG--YGVSVAIG---NVWGGKLADKHGAVSALKFIFAALVLLLLVFQL 285
                 .788888887778999999999999999999999.6*******7766666666..77777777...*************************99999999 PP

       MFS_1 294 lavtssavllllvlvliGfglgfvfpsllalasdla 329
                 +a   ++++l+ v +++G++++  +p l++++++ a
  CTQ26552.1 286 TASV-HYAALATV-LVMGVFAFGNVPGLQVYVVQKA 319
                 9999.44444434.4468855556677777777766 PP

  == domain 2  score: 44.7 bits;  conditional E-value: 1.3e-15
       MFS_1  28 gispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlgagalfpagaaliad...wfpkeergr 121
                 g+sps+++++l +y++  a++++ +G l+d++G+ + l + +++++l  ll + +++s+  + l+  +++G++a + +p+ ++++++    +++     
  CTQ26552.1 232 GFSPSAVSWILLGYGVSVAIGNVWGGKLADKHGAVSALKFIFAALVLL-LLVFqLTASVHyAALATVLVMGVFAFGNVPGLQVYVVQkaeQYTPGAVDI 329
                 89*******************************888888888888887.33333545555589999999****99999999999965222344449999 PP

       MFS_1 122 aigllsagfslGailgpllggllasslgWravfyilaivsllafvlflll 171
                 a gl  a+f++G++lg ++gg  ++ +g   + +i a + l+a++l++l 
  CTQ26552.1 330 ASGLNIAAFNVGIALGSIVGGQTVERYGLAQTPWIGAMIVLVALLLVVLS 379
                 ****************************7777777777777776654443 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9  43.6   2.3e-17   1.4e-13       3     361 ..      13     375 ..      11     378 .. 0.77

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 2.3e-17
       MFS_4   3 valGiGRFsytpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlr.llagllatvllllamaltesfaaflliRflaGvasAvvlv 100
                  a+G   F+   ++P + +++++sl  agll ++ +lG  +Ga +  +al  +  R + lla +++ ++  +  + + +  ++ll+R+l+G+a +v + 
  CTQ26552.1  13 FAIGTTEFVIVGLVPTIAQQLSISLPSAGLLVSIYALGVAIGAPVL-TALTGRMPRKQlLLALMVLFTAGNVLAWQAPGYETLLLARLLTGLAHGVFFS 110
                 699999*************************************766.566666666664566666666666667778899999**************** PP

       MFS_4 101 fgsslvlahaaaarrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaaeaakaeqkslpllallla 199
                 +gs+++ + +a+ ++++ +a++f+G  +   v+g+       ++ ++  + la+++l +++l+ ++ll+p++ +  asa+++    + k l   +ll+ 
  CTQ26552.1 111 IGSTIATSLVAKEKAASAIAIMFGGLTVAL-VTGVPFGTFIGQHFGWRETFLAVSILGVIALISSLLLVPNNIPGRASASLRD---QLKVLTHPRLLMI 205
                 ************************988865.4555554444555566667999999999999999999997777788887777...6677777788888 PP

       MFS_4 200 YglaGfGY..iita.tFlvaiardgaggalleallWllvG..laaivgvlvwlrvakrsglrralaaal.....lieavgvllsllspsplglivssvl 288
                 Y + ++GY  + ta tFl  + ++  +g    a  W+l+G  +++++g     ++a+++g+  al  ++     l+ +  +++s+   +++ ++v +v 
  CTQ26552.1 206 YAITALGYggVFTAfTFLAPMMQE-LAGFSPSAVSWILLGygVSVAIGNVWGGKLADKHGAVSALKFIFaalvlLLLVFQLTASVHYAALATVLVMGVF 303
                 9999888877777669*****999.88999999999997511666666644456666667776665544000003444444555555555555555555 PP

       MFS_4 289 lGltflaitalvlqlarelappatrrllglmTasfgigQilGpllasllaeatgslalallvaaaalvlaali 361
                   +   +   +v+q a +  p a+  + gl  a+f +g +lG ++ +   e+ g  + + + +a ++++a+l+
  CTQ26552.1 304 AFGNVPGLQVYVVQKAEQYTPGAVDIASGLNIAAFNVGIALGSIVGGQTVERYGLAQTPWI-GAMIVLVALLL 375
                 4455667778******************************************998888765.55555566555 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0  14.2   9.6e-12   5.7e-08      48     190 ..      40     177 ..       8     181 .. 0.77
   2 ?    1.7   7.5     0.016        94     253     373 ..     200     315 ..     185     324 .. 0.69
   3 !   14.7   1.0   1.7e-06      0.01      43      97 ..     323     380 ..     311     386 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 9.6e-12
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHH.HHHHHHHHHTTS-SCCHHHHHHHH.. CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGla.svlvPmyisEiApkklRgalvsly.. 143
                  gl+vsi+ +G +iG+ ++  l+ r+ Rk+ ll+  vlf +g+vl   a+    +e l+++R+l+G++ G++ s+ +++ +s +A++k ++a+  ++  
  CTQ26552.1  40 AGLLVSIYALGVAIGAPVLTALTGRMPRKQLLLALMVLFTAGNVLAWQAP---GYETLLLARLLTGLAHGVFfSIGSTIATSLVAKEKAASAIAIMFgg 135
                 699***********************************************...99***************86366777888888888888887776611 PP

                 .HHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHH.HGGG CS
    Sugar_tr 144 .qlaitfGilvaaifglglnktsnadgwrillglqlvpalllli.lllf 190
                   +a+++G  +++++g  +       gwr ++   +++ ++ li  ll+
  CTQ26552.1 136 lTVALVTGVPFGTFIGQHF-------GWRETFLAVSILGVIALIsSLLL 177
                 1355555555555555444.......46655555555555444404444 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.016
                 .HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...C CS
    Sugar_tr 253 qrlligvvlqifqqltGinaimyysptifenlglsks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaas 349
                  rll++ ++ ++       a+++++p++ e +g+s+s   ++ +++gv  ++  + +  l d+ G    l + +a   ++++++      l+a+   ++
  CTQ26552.1 200 PRLLMIYAITALGYGGVFTAFTFLAPMMQELAGFSPSavSWILLGYGVSVAIGNVWGGKLADKHGAVSALKFIFAALVLLLLVFQ-----LTASV-HYA 292
                 577777777777777777899****************7555555566666677777789******99999998888877777774.....23331.124 PP

                 HHHHHHHHHHHHHHHTTTTHHHHH CS
    Sugar_tr 350 ivaivfialfialfalgwgpvpwv 373
                  +a+v+++ + ++f+  +g  ++v
  CTQ26552.1 293 ALATVLVMGV-FAFGNVPGLQVYV 315
                 4444444444.5555566666665 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.7e-06
                 H......HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TT CS
    Sugar_tr  43 e...ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaak 97 
                 +    ++ sgl  ++f+vG ++Gs+++g  ++r+G  ++  i+a++++++ +l +++ 
  CTQ26552.1 323 TpgaVDIASGLNIAAFNVGIALGSIVGGQTVERYGLAQTPWIGAMIVLVALLLVVLSG 380
                 233378999****************************************999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.38
# Mc/sec: 3116.13
//
Query:       CTQ26553.1  [L=268]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-07   30.1   2.4    1.8e-06   27.7   2.4    2.0  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
       0.04   13.8   0.0        0.1   12.5   0.0    1.7  2  Exo_endo_phos_2  Endonuclease-reverse transcriptase


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   2.4     2e-10   1.8e-06       3     233 .]      52     255 ..      50     255 .. 0.63

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 2e-10
                    EEESTGCHHHHTHHHHHHHHHHHHHHC..TTSEEEEEEEBSCTCHHHHHHHHH................................TTCEEEEECCH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx................................xxxxxxxxxxx RF
  Exo_endo_phos   3 wNvngqaspalgssrrsdrladlltay..daDvlgLQEvdddelsriplllal................................ggflgasstsp 64 
                    wN+  q         + +  +++l+++  da +++LQE++  ++ ++ +++++                                +          
     CTQ26553.1  52 WNIFKQ---------QRAEWQSVLKNFgkDAHLVLLQEAQTTPELVRFATSNYlaadqvpalvlpqhpsgvmtlasahpiyccplR---------- 128
                    888887.........67778888888888889999999888888888888866776666665555444444444443333222220.......... PP

                    ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE.........CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  65 tgggggggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni.........ashrdhdlvrdlqllalllqvealnadrgapvivaG 151
                                            r +i    ++a +   p                   + h+ + +        +ll + +  a++++pvi aG
     CTQ26553.1 129 -----------------------EREPILRLPKSALVTVYP---------LpdarllmvvNIHAVNFSLGVDVYSKQLLPIGDQIAHHSGPVIMAG 192
                    .......................222222222222222222.........02222233335555555555555566777777778999999***** PP

                    E-SSSTSGGGBSCGHHHHHHCTTTHHSSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 152 DfNarpsdddsrvlrtrglalapapvglyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                    DfNa    ++ +++++  + + ++     l         ++ra+g  lD ++++ +l +++++vl   +          SDH
     CTQ26553.1 193 DFNA----WSRPRMNALYRFAREM----SLREVRFSDDQRRRAFGRPLDFVFYR-GLSVHDASVLVTRA----------SDH 255
                    ****....5555555555555553....6788999999****************.68888888887776..........999 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.64   5.7e+03      60      80 ..      66      86 ..      52     102 .. 0.58
   2 ?   12.5   0.0   1.1e-05       0.1      18     117 ..     171     257 ..     153     259 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.64
  Exo_endo_phos_2 60 Liefleehslsllnllksgpt 80
                     L +f ++ +l ll++ +++p+
       CTQ26553.1 66 LKNFGKDAHLVLLQEAQTTPE 86
                     455555555555555444444 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.1e-05
  Exo_endo_phos_2  18 estlekllselksp..kiiilGDfNakhplWgsedtdssargeeLiefleehslsllnllksgptfkssngsstiDltltsdnlalskleleee 109
                      +++l  + ++  +   ++i++GDfNa    W+        r + L++f  e sl+ +    s  + +++     +D+++ +   ++++  l   
       CTQ26553.1 171 SKQLLPIGDQIAHHsgPVIMAGDFNA----WSR------PRMNALYRFAREMSLREVRF--SDDQRRRAF-GRPLDFVFYRGLSVHDASVL--V 249
                      6677777777777778*********8....877......78899999999999993322..222222222.58899999888777772222..3 PP

  Exo_endo_phos_2 110 dlgSDHrp 117
                         SDH+p
       CTQ26553.1 250 TRASDHNP 257
                      46788887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2071.31
//
Query:       CTQ26554.1  [L=256]
Description: SAM-dependent methyltransferase YafE (UbiE paralog) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-27   94.4   0.1    8.6e-27   93.6   0.1    1.4  1  Methyltransf_11  Methyltransferase domain
    2.5e-24   85.8   0.1    4.8e-24   84.9   0.1    1.5  1  Methyltransf_25  Methyltransferase domain
    1.8e-23   83.2   0.0    2.5e-23   82.7   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    6.3e-23   81.2   0.0    9.6e-23   80.7   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    1.8e-19   70.0   0.0    2.4e-19   69.6   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    5.1e-15   56.0   0.0    9.1e-15   55.2   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
      7e-09   35.5   0.0    1.1e-08   34.8   0.0    1.3  1  MTS              Methyltransferase small domain
    6.6e-08   31.6   0.0    8.5e-08   31.2   0.0    1.1  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
    7.2e-08   32.5   0.0    6.9e-07   29.3   0.0    2.0  1  Methyltransf_8   Hypothetical methyltransferase
      1e-06   27.9   0.0    1.4e-06   27.5   0.0    1.1  1  Methyltransf_9   Protein of unknown function (DUF1698)
    5.3e-06   26.2   0.0    8.9e-06   25.4   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW
    6.3e-06   25.5   0.0    8.5e-06   25.0   0.0    1.1  1  DREV             DREV methyltransferase
    9.2e-06   25.1   0.1    1.2e-05   24.8   0.1    1.1  1  Methyltransf_2   O-methyltransferase domain
    1.9e-05   24.2   0.0    2.6e-05   23.7   0.0    1.2  1  TehB             Tellurite resistance protein TehB
    3.6e-05   23.3   0.0      6e-05   22.6   0.0    1.4  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00039   19.8   0.0    0.00062   19.1   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
     0.0048   16.9   0.0     0.0073   16.3   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
     0.0066   17.4   0.1      0.014   16.4   0.1    1.7  1  Methyltransf_24  Methyltransferase domain
  ------ inclusion threshold ------
      0.013   14.6   0.0      0.014   14.5   0.0    1.2  1  RrnaAD           Ribosomal RNA adenine dimethylase
      0.023   14.2   0.0        0.1   12.1   0.0    1.9  1  Methyltransf_4   Putative methyltransferase
      0.031   13.9   0.0      0.043   13.4   0.0    1.2  1  NodS             Nodulation protein S (NodS)
      0.032   13.9   0.1       0.05   13.2   0.1    1.4  1  TPMT             Thiopurine S-methyltransferase (TPMT)
      0.088   12.5   0.0       0.12   12.1   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
       0.12   11.8   0.3       0.18   11.2   0.3    1.2  1  DUF3100          Protein of unknown function (DUF3100)
       0.15   11.3   0.0       0.57    9.3   0.0    1.8  2  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   0.1   1.2e-29   8.6e-27       1      96 []      49     145 ..      49     145 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.6 bits;  conditional E-value: 1.2e-29
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGl 93 
                      Ld+GcG+G  +   a ++a+v++ Dls +ml+++ ++a+e+g+ ++  +++ ae+lpf+d+sfD+v+s+ + hh++d+ +al+e++RvLkpgG+
       CTQ26554.1  49 LDMGCGAGHASFTAAGQVAEVTAYDLSSQMLEVVAAAAKEKGFsNIVTQQGYAETLPFADASFDVVISRYSAHHWHDVGQALREVKRVLKPGGV 142
                      8**************999*************************99999********************************************** PP

                      EEE CS
  Methyltransf_11  94 lvi 96 
                      +++
       CTQ26554.1 143 IIV 145
                      986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.1   6.8e-27   4.8e-24       1      97 []      48     141 ..      48     141 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.9 bits;  conditional E-value: 6.8e-27
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+GcG G+ ++ +a ++  a+vt+ D+s++mle +++ a+e+g+ n+  +qg ae+lpf+d+sfD+v+s+++ hh++  d+ +al+e++rvL
       CTQ26554.1  48 VLDMGCGAGHASFTAAGQV--AEVTAYDLSSQMLEVVAAAAKEKGFsNIVTQQGYAETLPFADASFDVVISRYSAHHWH--DVGQALREVKRVL 137
                      9***************998..***************************************************9999976..899********** PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      kpgG
       CTQ26554.1 138 KPGG 141
                      ***9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0   3.4e-26   2.5e-23       7     162 ..      31     191 ..      22     194 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 3.4e-26
  Methyltransf_23   7 eelsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae......kakkaqkdqfdeqeaaepqgkfdlIvlrevleh 94 
                      + l+++ erl+  ++++++vLd+GcG G+ +  ++ ++++vt++Dls+++ e ++      ++++ + +q +++  ++ +++fd++++r++ +h
       CTQ26554.1  31 RDLQRLAERLA--DFPQAKVLDMGCGAGHASFTAAGQVAEVTAYDLSSQMLEVVAaaakekGFSNIVTQQGYAETLPFADASFDVVISRYSAHH 122
                      44566666676..8**************************************9999999999999999999999******************** PP

  Methyltransf_23  95 vpdppellrqiatllkpgGylllseplaslk..edrllldwlylvpagrhisffsarslkelleeaGlev 162
                       +d+  +lr +++ lkpgG+++++++ ++ +  +d +l+ +++l++   h++ +s+ ++ +l+ eaGl v
       CTQ26554.1 123 WHDVGQALREVKRVLKPGGVIIVMDVMSPGHpvRDVWLQTVEALRDT-SHVRNYSSGEWLTLATEAGLVV 191
                      *************************99999778************98.*******************976 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   1.3e-25   9.6e-23       5     127 ..      46     171 ..      43     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 1.3e-25
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeie 98 
                       +vlD GCG+G+ +f +a   g+ aev+  D s +++e+  + a+++g++n+  +qg +e+l+  ++d++fD+++s+   ++  d  ++l+e++
       CTQ26554.1  46 AKVLDMGCGAGHASFTAA---GQVAEVTAYDLSSQMLEVVAAAAKEKGFSNIVTQQGYAETLP--FADASFDVVISRYSAHHWHDVGQALREVK 134
                      58****************...66799*************************************..***************************** PP

  Methyltransf_31  99 rvlkpggilliedpr........llaelpakveeesk 127
                      rvlkpgg++++ d+         ++ +  + ++++s+
       CTQ26554.1 135 RVLKPGGVIIVMDVMspghpvrdVWLQTVEALRDTSH 171
                      **********999886666655533333344444444 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   3.4e-22   2.4e-19      39     159 ..      36     153 ..       5     163 .. 0.88

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 3.4e-22
                      HHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-H CS
  Ubie_methyltran  39 veklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDk 132
                      + ++ a+ + akvlD+ +G+g  +f+    +g+  +v+  D++++mL+v  + +ke+g++ni   q+ ae Lpf d sfDvv   +      D 
       CTQ26554.1  36 LAERLADFPQAKVLDMGCGAGHASFTA---AGQVAEVTAYDLSSQMLEVVAAAAKEKGFSNIVTQQGYAETLPFADASFDVVISRYSAHHWHDV 126
                      55667788889***********99975...666779********************************************************** PP

                      HHHHHHHHHHEEEEEEEEEEEE----S CS
  Ubie_methyltran 133 lkaLkeayrvlkpGGrlvvlefskvel 159
                       +aL+e+ rvlkpGG ++v+++  +  
       CTQ26554.1 127 GQALREVKRVLKPGGVIIVMDVMSPGH 153
                      *******************99877655 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   1.3e-17   9.1e-15       1      99 []      49     143 ..      49     143 .. 0.85

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 1.3e-17
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L+ GcG G+ ++  + +   +e+t++D+s++++e  ++  ++++  n    +  a+ l   d  +sfD+v++    hh+ d+ ++l++++++Lk
       CTQ26554.1  49 LDMGCGAGHASFTAAGQ--VAEVTAYDLSSQMLEVVAAAAKEKGFSNIVTQQGYAETLPFAD--ASFDVVISRYSAHHWHDVGQALREVKRVLK 138
                      89***************..**************66666666666666666666666655554..4***************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgG++
       CTQ26554.1 139 PGGVI 143
                      ***86 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   1.5e-11   1.1e-08      23     138 ..      36     146 ..      27     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.5e-11
                 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTST..TS-EEEEEE---STTTCHCHHHHHH CS
         MTS  23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeve..ekkfdlivsNPPfhagkatelavae 119
                 L+e l +  + kvlD+GcGaG  + ++a +  e  vt++d + + le+  + +++++++  v+++   e+++  +++fd+++s    h+ ++    v +
  CTQ26554.1  36 LAERLADFPQAKVLDMGCGAGHASFTAAGQVAE--VTAYDLSSQMLEVVAAAAKEKGFSNIVTQQGYAETLPfaDASFDVVISRYSAHHWHD----VGQ 128
                 667777778999**********99999987766..9*********************987777777766665669********776666666....555 PP

                 HHHHHHHHHEEEEEEEEEE CS
         MTS 120 eliaeAkeaLkegGeLliV 138
                   ++e k++Lk+gG +++ 
  CTQ26554.1 129 -ALREVKRVLKPGGVIIVM 146
                 .56899********87653 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.2e-10   8.5e-08     118     217 ..      45     145 ..      11     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.2e-10
  Methyltransf_29 118 vrtvlDvGCgv..asfgayllsrdvltlslapkDeheaqvqfaLeRgvpailavlg.tkrlpyPsrsfdlihCsrCridwteedgilllevdRv 208
                        +vlD+GCg   asf+a+    +v++  l+ +   e     a e+g+  i++  g ++ lp+  +sfd++  sr   ++ ++ g  l ev+Rv
       CTQ26554.1  45 QAKVLDMGCGAghASFTAAGQVAEVTAYDLSSQ-MLEVVAAAAKEKGFSNIVTQQGyAETLPFADASFDVVI-SRYSAHHWHDVGQALREVKRV 136
                      5679*****74449****************976.77888899***********9994578*********996.66666666678999******* PP

  Methyltransf_29 209 lRpgGyfvl 217
                      l+pgG  ++
       CTQ26554.1 137 LKPGGVIIV 145
                      *****8775 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   9.7e-10   6.9e-07      73     164 ..      45     153 ..      10     178 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 9.7e-10
                     TS-EEEES-TT-HHH.HH--S-..EEEEESS-SSTTEEES-........TTS........-S--TT-EEEEEEES---S.S-HHHHHHHHHHHEE CS
  Methyltransf_8  73 nlvvadlGcGeakia.eavrekekvrsfdlvavnervvacd........lak........vPledesvdvavfclslmg.tnladflkeanrvlk 149
                     +  v d+GcG  + + +a ++  +v ++dl +   +vva          +          +P +d s dv++   s     ++ + l+e++rvlk
      CTQ26554.1  45 QAKVLDMGCGAGHASfTAAGQVAEVTAYDLSSQMLEVVAAAakekgfsnI-VtqqgyaetLPFADASFDVVISRYSAHHwHDVGQALREVKRVLK 138
                     56789*****9998855788999*******99877777653111221111.0122333339************99986438999*********** PP

                     EEEEEEEEEEGGG-S CS
  Methyltransf_8 150 vGGllkvaevksrfe 164
                     +GG++ v +v s  +
      CTQ26554.1 139 PGGVIIVMDVMSPGH 153
                     **********99655 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0     2e-09   1.4e-06     100     224 ..      29     152 ..      24     164 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2e-09
                     HHHHHHHHGGGS.--TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T.---EEEEEEES-GG CS
  Methyltransf_9 100 sdwkWdrvlphlsdlkgrtildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahllplgieqlpe.leafdtvfsmGvly 193
                     s +  +r+ + l+d+ + ++ld+Gcg+G+  +  +g+ a+ v   d s++ l    a  k  g  + +++  +  e lp   ++fd+v s    +
      CTQ26554.1  29 SGRDLQRLAERLADFPQAKVLDMGCGAGHASFTAAGQVAE-VTAYDLSSQMLEVVAAAAKEKGFSNIVTQQGY-AETLPFaDASFDVVISRYSAH 121
                     566789****************************999887.56789999999999999999999999999865.599*985678*********** PP

                     G-S-HHHHHHHHHCTEEEEEEEEEEEE-BSS CS
  Methyltransf_9 194 hrrsPldhllqlkdqlvkgGelvletlvieG 224
                     h +   + l+++k  l+ gG +++  ++ +G
      CTQ26554.1 122 HWHDVGQALREVKRVLKPGGVIIVMDVMSPG 152
                     ********************99987666555 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.2e-08   8.9e-06      13     103 ..      44     138 ..      31     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.2e-08
        MetW  13 pgsrvldlGcGdGel.lellkeekqvdgrGleldeegvaecva..kGls.viqgdldkdlenfedksfdyvvlsqtlqatrnpkevldellrigr 103
                 p+++vld+GcG G+  ++   +  +v+++ l  +   v+++ a  kG s ++ ++   +   f+d sfd+v+   +    ++  + l+e+ r+ +
  CTQ26554.1  44 PQAKVLDMGCGAGHAsFTAAGQVAEVTAYDLSSQMLEVVAAAAkeKGFSnIVTQQGYAETLPFADASFDVVISRYSAHHWHDVGQALREVKRVLK 138
                 799**********862566678899*******9998887766522688544444444555579**************************999855 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.2e-08   8.5e-06      92     195 ..      42     154 ..      32     179 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.2e-08
        DREV  92 dqedkklldlGaGdGeitkrvaptfeevyatelsetmrdrl....kkkky.nvlsalelqet....dvkldlilclnlldrcfdplklledirsalepn 181
                 d+ + k+ld+G G G+ +   a ++ ev a +ls++m + +    k k++ n++++  ++et    d  +d++ +       +d ++ l++++ +l+p 
  CTQ26554.1  42 DFPQAKVLDMGCGAGHASFTAAGQVAEVTAYDLSSQMLEVVaaaaKEKGFsNIVTQQGYAETlpfaDASFDVVISRYSAHHWHDVGQALREVKRVLKPG 140
                 67789********************************8765333367888567777779997766699*******9999999***************** PP

        DREV 182 grvivalvlPvshy 195
                 g +iv  v+   h 
  CTQ26554.1 141 GVIIVMDVMSPGHP 154
                 **999988765555 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   1.6e-08   1.2e-05      60     208 ..      40     188 ..       6     190 .. 0.65

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.6e-08
                     GGG-S..EEEEET-TTSHHHHHHHHH-TT-EEEEEE-H....HHHHHHHHHS-----TTEEEEES-TTTS-----SEEEEESS....GGGS-HHH CS
  Methyltransf_2  60 leglk..slvDvGGGtGalakaivsayPtikvivfDlp....eVveaAkehlsageeervefvgGdffkdslPeaDaillkrv....lhDwsdek 144
                     l  ++  +++D+G G+G +    ++a    +v+ +Dl+    eVv+aA +    +  +++  ++G  + ++lP aDa + + +     h w d  
      CTQ26554.1  40 LADFPqaKVLDMGCGAGHAS--FTAAGQVAEVTAYDLSsqmlEVVAAAAKE---KGFSNIVTQQG--YAETLPFADASFDVVIsrysAHHWHD-- 125
                     55554114678888887654..45555567889999873333466665555...23344444555..668*****996544442112466654.. PP

                     HHHHHHHHHHH--TT-EEEEEE----TTS---HHHHHHHHHHHHC.SS-----HHHHHHHHHHCT CS
  Methyltransf_2 145 cvklLkrvkkalpagGkvivveavlgadpsgeletelvdlimlvq.teGkeRteaeyeellseaG 208
                     + + L++vk+ l++gG +iv++++ + +p +++  + v    l   ++ ++ +  e+ +l++eaG
      CTQ26554.1 126 VGQALREVKRVLKPGGVIIVMDVMSPGHPVRDVWLQTV--EALRDtSHVRNYSSGEWLTLATEAG 188
                     8899*********************9999988877764..3343323455667789999999998 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   3.7e-08   2.6e-05      32     137 ..      46     150 ..      21     169 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.7e-08
                 -EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG---.-S-EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEE CS
        TehB  32 gkvldlgcgqgrnslylsllgydvtawdknensiafleeikekenlknistalydineakl.derydfilstvvlmfleaeripsiienmqectkvggy 129
                 +kvld+gcg g  s+  + +  +vta+d  ++ ++ +   ++ + ++ni t+    +++ + d  +d ++s       + + + + ++++++  k+gg 
  CTQ26554.1  46 AKVLDMGCGAGHASFTAAGQVAEVTAYDLSSQMLEVVAAAAKEKGFSNIVTQQGYAETLPFaDASFDVVISRYSA--HHWHDVGQALREVKRVLKPGGV 142
                 7**************************************999999999999987777777636789*99998655..556789999************9 PP

                 EEEEEEB- CS
        TehB 130 nlivaams 137
                  +++  ms
  CTQ26554.1 143 IIVMDVMS 150
                 99998887 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   8.3e-08     6e-05     161     264 ..      44     151 ..      32     187 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 8.3e-08
        PrmA 161 egeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveakleva.lseell.keekadvivaNILaev...lielaedikklvkegg 254
                 ++++vlD+G+G+G  +  aa    ++v+a+D+ ++ ++v ++ a+  + ++ ++ +  +e+l+ +++++dv+++   a+    + + + ++k+++k+gg
  CTQ26554.1  44 PQAKVLDMGCGAGHASFTAAG-QVAEVTAYDLSSQMLEVVAAAAKEKGFSNIVTQQgYAETLPfADASFDVVISRYSAHHwhdVGQALREVKRVLKPGG 141
                 5679************99987.5679************999999999999977544133444444799**********972224455778999****** PP

        PrmA 255 llilSGilke 264
                 ++i+  +++ 
  CTQ26554.1 142 VIIVMDVMSP 151
                 ***9888764 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   8.6e-07   0.00062      51     168 ..      33     149 ..      19     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.6e-07
                 HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG...---.--SEEEEES-GGGTSGGGH CS
        CMAS  51 ldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyed...lde.kvdrvvsvgafehvgkeny 145
                 l+++ e+l   p  ++Ld+GcG G+   +a+ +  ++v +  lS++  +++ ++ +e ++++   v+ ++y +   +++  +d v+s     h   +  
  CTQ26554.1  33 LQRLAERLADFPQAKVLDMGCGAGHASFTAAGQ-VAEVTAYDLSSQMLEVVAAAAKEKGFSNI--VTQQGYAEtlpFADaSFDVVISRYSAHHW--HDV 126
                 556666777778899*****************9.89**********************98765..66788887333444699999887666664..455 PP

                 HHHHHHHHHHS-TT-EEEEEEEE CS
        CMAS 146 dtffkklkkllkedGllllhtit 168
                  +  +++k++lk++G++++  ++
  CTQ26554.1 127 GQALREVKRVLKPGGVIIVMDVM 149
                 66788999999999999887665 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     1e-05    0.0073      22      85 ..      41      97 ..      21     116 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1e-05
  Methyltransf_32 22 kesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfa 85
                     ++ ++ +v+D+G+G g+ sf+ a    +   +v++ d+++++ e   + a++ g  f +++ ++
       CTQ26554.1 41 ADFPQAKVLDMGCGAGHASFTAAG---Q-VAEVTAYDLSSQMLEVVAAAAKEKG--F-SNIVTQ 97
                     4556789**************999...4.789*************999999988..6.555554 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.9e-05     0.014      24     105 ..      67     147 ..      17     148 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.9e-05
  Methyltransf_24  24 grlvavdhdpg.aeeaaalareaglddrvrlikadseealaslaagsiDllfiDg.ghaaeavledleallprlapggvvlfdD 105
                       +++a d   +  e +aa a+e+g++++v+  ++   e+l+  +  s+D+++     h  ++v ++l+ + ++l+pggv+++ D
       CTQ26554.1  67 AEVTAYDLSSQmLEVVAAAAKEKGFSNIVT--QQGYAETLPFAD-ASFDVVISRYsAHHWHDVGQALREVKRVLKPGGVIIVMD 147
                      456677776544566888899999999876..466688888777.99**999887256679*******************9866 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     2e-05     0.014      30      88 ..      44     102 ..      18     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2e-05
                 TTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTTTCCCEEEE-S-CCGH CS
      RrnaAD  30 ekltvleigpGkGilTeeLakrakqvvvlElderLakllqkklskdeklkvvhqDflkf 88 
                 ++ +vl++g G G+ +   a ++ +v+++ l +++++++ ++ ++++ +++v q ++  
  CTQ26554.1  44 PQAKVLDMGCGAGHASFTAAGQVAEVTAYDLSSQMLEVVAAAAKEKGFSNIVTQQGYAE 102
                 899**************************************999999999999998865 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014       0.1       3     113 ..      46     143 ..      44     182 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
                     EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS-TTSEEEEEEES-----SGGGGGGSTTSH CS
  Methyltransf_4   3 pvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllelledgslekifilFPDPwfKkrhhKrRllqp 97 
                       vl++GcG G++  + A + ++++  + ++++++++ v +++++++++N+   +g a ++l   ++d+s++ +   ++       hh + + q 
      CTQ26554.1  46 AKVLDMGCGAGHASFTAAGQVAEVT--AYDLSSQMLEVVAAAAKEKGFSNIVTQQGYA-ETL--PFADASFDVVISRYSA------HHWHDVGQ- 128
                     5689*****************9976..7899**********************99999.888..5888888888877764......43443333. PP

                     HHHHHHHHHEEEEEEE CS
  Methyltransf_4  98 ellkelarvLkkgGvl 113
                       l e++rvLk+gGv+
      CTQ26554.1 129 -ALREVKRVLKPGGVI 143
                     .355555555555555 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.9e-05     0.043       6     143 ..       7     144 ..       2     151 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.9e-05
        NodS   6 kellerelaaedPwrldanefeqerlaqilrlslaqgsiadalevGcaaGalterlapyckrltvvdvveeaiar..arervkesshiswivsdvqqfs 102
                 ++ +e+++ ++    l ++ +   r  q l   la+   a++l++Gc aG  +   a     +t  d+ ++ ++   a  + k  s+i   +   + + 
  CTQ26554.1   7 HDNVEKQFGSQASAYLTSAVHASGRDLQRLAERLADFPQAKVLDMGCGAGHASFTAAGQVAEVTAYDLSSQMLEVvaAAAKEKGFSNIVTQQGYAETLP 105
                 555666666666667777777778888888888999999************99999************9998775115556667788888877777775 PP

        NodS 103 .tdekfdlivvaevlyyiedvaelraavrnlvsllapdgqlv 143
                  +d+ fd+++     y  ++  ++  a+r++ ++l+p+g ++
  CTQ26554.1 106 fADASFDVVISR---YSAHHWHDVGQALREVKRVLKPGGVII 144
                 36899**99975...777777778889**********99887 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     7e-05      0.05      24      81 ..      31      88 ..      11     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7e-05
                HHHHHHHHT.T-S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHHHTT CS
        TPMT 24 pllkkfldalkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffeeanl 81
                + l+++ ++l+  ++++vl  +CG ++     A q  ev + +ls + +e  ++ a++
  CTQ26554.1 31 RDLQRLAERLADFPQAKVLDMGCGAGHASFTAAGQVAEVTAYDLSSQMLEVVAAAAKE 88
                6799*****************************************9988776555444 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00017      0.12      58     150 ..      25     118 ..       6     158 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00017
                 -HHHHHHHHHHTT..--..TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES-GGGTTGGG-SEEEEEESS CS
        PCMT  58 aphmvalalelle..lk..kgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDGrkGyeekaPYdaihvga 150
                 a h  ++ l+ l   l   ++a+vL++G+G+G  +   a  v e++   + + + ++ e   +  k+++ +n++++ g  ++   + a +d+++   
  CTQ26554.1  25 AVHASGRDLQRLAerLAdfPQAKVLDMGCGAGHASFTAAGQVAEVT---AYDLSSQMLEVVAAAAKEKGFSNIVTQQGYAETLPFADASFDVVISRY 118
                 555555555555445432279***********98887776666655...889999999999999999999999988776655555556666665544 PP

>> DUF3100  Protein of unknown function (DUF3100)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00025      0.18     169     209 ..      46      86 ..      35     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00025
     DUF3100 169 plalamasGvGsgsmmaaasgalaaalpemaeeilalaaas 209
                  + l m++G G +s +aa+  a ++a++  ++ +  +aaa+
  CTQ26554.1  46 AKVLDMGCGAGHASFTAAGQVAEVTAYDLSSQMLEVVAAAA 86 
                 56799***************999999998888877777765 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0         1   7.3e+02      43      93 ..      33      80 ..      23      93 .. 0.69
   2 ?    9.3   0.0   0.00079      0.57     160     202 ..     108     150 ..      82     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1
                    HHHHHHHHHTSSS-ECEEEEET-TT--GGGTTGGGTECEEEEEESSHHHHH CS
  NNMT_PNMT_TEMT 43 LknllqtlatgekkgdtllDiGaGPTvyqllsarevakeitlsDyldqNrd 93
                    L+ l+++la       ++lD+G G   +   +a  ++ e+t  D + q ++
      CTQ26554.1 33 LQRLAERLAD--FPQAKVLDMGCGAG-HASFTAAGQVAEVTAYDLSSQMLE 80
                    6677777773..33488999999965.555555556666776666666555 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00079
                     EEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEECS CS
  NNMT_PNMT_TEMT 160 dvvvtifcleaacedleeylralrnlasllkpGGhlvlggvle 202
                     d+   +    +++++ +   +alr++ ++lkpGG++++++v+ 
      CTQ26554.1 108 DASFDVVISRYSAHHWHDVGQALREVKRVLKPGGVIIVMDVMS 150
                     555555555677888888899******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1844.75
//
Query:       CTQ26555.1  [L=455]
Description: membrane-bound lytic murein transglycosylase D [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-29   99.4   0.0    1.5e-28   98.8   0.0    1.3  1  SLT        Transglycosylase SLT domain
    3.8e-28   97.3   0.1      2e-13   50.2   0.2    3.4  3  LysM       LysM domain
     0.0051   17.1   0.0        3.4    8.0   0.0    2.7  2  HTH_Tnp_1  Transposase
  ------ inclusion threshold ------
      0.014   15.4   0.0        3.5    7.7   0.0    3.2  3  DUF3071    Protein of unknown function (DUF3071)
       0.03   14.1   0.5         12    5.8   0.1    2.8  2  HTH_23     Homeodomain-like domain
      0.049   13.7   0.1        2.1    8.5   0.0    2.8  2  OapA       Opacity-associated protein A LysM-like domain
      0.098   12.8   0.2         25    5.1   0.0    2.7  2  HTH_28     Helix-turn-helix domain
       0.11   12.7   0.0         10    6.3   0.0    3.1  3  MerR_1     MerR HTH family regulatory protein
       0.59   10.3   2.6        0.5   10.6   0.8    1.8  2  MLTD_N     MltD lipid attachment motif


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0   7.5e-32   1.5e-28       1     113 [.     105     217 ..     105     221 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 7.5e-32
                 HHHHHHHHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT-SHHHHCSHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH-HH CS
         SLT   1 eliikaekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvklsedelldPeknisagakyLkslykqyngslllalaAYNaGeg 99 
                 +++i+ + k++ +p++l+ ++ vES+f+p+A+s+++a+G++Qi+pst +++gl++++s+d ++d++ +++a+  ++++l+k+++g++ll++aAYN+Geg
  CTQ26555.1 105 MYWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRSYDARRDVVASTTAALDMMQRLNKMFDGDWLLTVAAYNSGEG 203
                 5899999******************************************************************************************** PP

                 HHHHTTHSSHHHHH CS
         SLT 100 tvkkakkevkkkek 113
                 +v+ka k ++++ k
  CTQ26555.1 204 RVMKAVKANRSRGK 217
                 *******9998876 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.27   5.3e+02      10      33 ..     275     299 ..     272     302 .. 0.86
   2 !   50.2   0.2     1e-16     2e-13       1      43 [.     346     387 ..     346     388 .. 0.98
   3 !   41.8   0.0   4.1e-14   8.2e-11       1      43 [.     405     445 ..     405     446 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.27
                 HHHHHHCTCHHHHHHHHC.TCSSCG CS
        LysM  10 wsIAkrygitveklleaN.nlsspd 33 
                 +++A+  g++v+kl+  N ++++++
  CTQ26555.1 275 SQLADMAGMPVSKLKTFNaGVKGST 299
                 7899999*********999888765 PP

  == domain 2  score: 50.2 bits;  conditional E-value: 1e-16
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLki 43 
                 Y+V++GDT+++IA+r g+t ++l+++Nnl++++ +++Gq L+i
  CTQ26555.1 346 YKVRSGDTISGIASRLGVTTRDLQQWNNLRGSG-LKVGQNLVI 387
                 9********************************.*******99 PP

  == domain 3  score: 41.8 bits;  conditional E-value: 4.1e-14
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLki 43 
                 Y+V+kGD+L+sIAkr+g+++++ +++N  s++d+++pG++L++
  CTQ26555.1 405 YRVRKGDSLSSIAKRHGVNIRDVMRWN--SDTDNLRPGDQLTL 445
                 9**************************..55556******985 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0017       3.4      22      47 ..     350     375 ..     345     392 .. 0.85
   2 !    6.0   0.0    0.0073        15      22      45 ..     409     432 ..     403     444 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0017
   HTH_Tnp_1  22 pgksvsevArrhgvspnqLykWrrqy 47 
                 +g ++s +A r+gv    L +W  + 
  CTQ26555.1 350 SGDTISGIASRLGVTTRDLQQWNNLR 375
                 6899******************8774 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0073
   HTH_Tnp_1  22 pgksvsevArrhgvspnqLykWrr 45 
                  g s s++A+rhgv+     +W +
  CTQ26555.1 409 KGDSLSSIAKRHGVNIRDVMRWNS 432
                 68899**********998888865 PP

>> DUF3071  Protein of unknown function (DUF3071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.22   4.3e+02      68      90 ..     273     295 ..     264     297 .. 0.87
   2 ?    2.4   0.0     0.072   1.4e+02      48      86 ..     335     371 ..     308     373 .. 0.72
   3 ?    7.7   0.0    0.0018       3.5      58      87 ..     402     431 ..     388     434 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.22
     DUF3071  68 sveevaeeagvsververyahPv 90 
                 ++ ++a+ ag++v++++++ + v
  CTQ26555.1 273 DISQLADMAGMPVSKLKTFNAGV 295
                 5789***************9877 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.072
     DUF3071  48 aeeesslrpreIQariRaGasveevaeeagvsververy 86 
                  +++++l+ r    ++R+G ++  +a+++gv+++ ++++
  CTQ26555.1 335 LADNTPLTSRS--YKVRSGDTISGIASRLGVTTRDLQQW 371
                 44555555554..589***************99887765 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0018
     DUF3071  58 eIQariRaGasveevaeeagvsververya 87 
                  I  r+R+G s   +a++ gv+++ v+r+ 
  CTQ26555.1 402 SITYRVRKGDSLSSIAKRHGVNIRDVMRWN 431
                 5778**********************9986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.007        14      14      37 ..     348     371 ..     344     380 .. 0.80
   2 ?    5.8   0.1    0.0063        12      13      37 ..     406     430 ..     402     433 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.007
      HTH_23  14 laeGlsvreIAreLgvsrrTvyrw 37 
                 ++ G++++ IA +Lgv+ r +++w
  CTQ26555.1 348 VRSGDTISGIASRLGVTTRDLQQW 371
                 455**************9977666 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0063
      HTH_23  13 llaeGlsvreIAreLgvsrrTvyrw 37 
                  +++G+s + IA+++gv+ r v rw
  CTQ26555.1 406 RVRKGDSLSSIAKRHGVNIRDVMRW 430
                 5677*************99977777 PP

>> OapA  Opacity-associated protein A LysM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.12   2.3e+02       2      37 ..     343     378 ..     342     393 .. 0.80
   2 ?    8.5   0.0     0.001       2.1       4      29 ..     404     429 ..     401     452 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.12
        OapA   2 wkeyqvkkgktLaqvFRdnnLplsdvnalakveGad 37 
                 +++y+v++g+t++ +    ++   d++   +  G++
  CTQ26555.1 343 SRSYKVRSGDTISGIASRLGVTTRDLQQWNNLRGSG 378
                 689*********999888888888888888877765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.001
        OapA   4 eyqvkkgktLaqvFRdnnLplsdvna 29 
                 +y+v+kg++L+ + + +++++ dv+ 
  CTQ26555.1 404 TYRVRKGDSLSSIAKRHGVNIRDVMR 429
                 8**********************975 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.016        32      10      32 ..     349     371 ..     346     379 .. 0.89
   2 ?    5.1   0.0     0.012        25       9      32 ..     407     430 ..     404     431 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.016
      HTH_28  10 aaGhsvreaArelgisrrtvyrW 32 
                  +G++++ +A +lg++ r +++W
  CTQ26555.1 349 RSGDTISGIASRLGVTTRDLQQW 371
                 5799**************99999 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.012
      HTH_28   9 laaGhsvreaArelgisrrtvyrW 32 
                 + +G+s + +A+++g++ r v rW
  CTQ26555.1 407 VRKGDSLSSIAKRHGVNIRDVMRW 430
                 56899************9999999 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.14   2.7e+02       3      19 ..     274     290 ..     272     292 .. 0.89
   2 ?    6.3   0.0    0.0053        10       2      21 ..     353     372 ..     353     380 .. 0.92
   3 ?   -0.0   0.0      0.48   9.6e+02       3      28 ..     413     439 ..     412     444 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.14
                 HHHHHHHHTS-HHHHHH CS
      MerR_1   3 igevakilgvtthtlry 19 
                 i+++a ++g++++ l+ 
  CTQ26555.1 274 ISQLADMAGMPVSKLKT 290
                 99**********99986 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0053
                 EHHHHHHHHTS-HHHHHHHH CS
      MerR_1   2 sigevakilgvtthtlrywe 21 
                 +i+  a +lgvtt+ l+ w 
  CTQ26555.1 353 TISGIASRLGVTTRDLQQWN 372
                 79999**************7 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.48
                 HHHHHHHHTS-HHHHHHHHHHTT.-S- CS
      MerR_1   3 igevakilgvtthtlrywekegl.lkp 28 
                 ++  ak+ gv+ + +  w      l+p
  CTQ26555.1 413 LSSIAKRHGVNIRDVMRWNSDTDnLRP 439
                 67899********99999877776766 PP

>> MLTD_N  MltD lipid attachment motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.8   0.00025       0.5      21      33 ..       5      17 ..       2      18 .. 0.93
   2 ?   -3.2   0.0       5.1     1e+04      11      16 ..     260     265 ..     259     266 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
      MLTD_N 21 salaaaalLaGCQ 33
                ++l+a+ lL+GCQ
  CTQ26555.1  5 AILLASVLLVGCQ 17
                69*********** PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.1
      MLTD_N  11 kdALtR 16 
                 ++AL+R
  CTQ26555.1 260 SRALAR 265
                 89***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3548.70
//
Query:       CTQ26556.1  [L=251]
Description: putative hydroxyacylglutathione hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-23   83.1   0.7    2.4e-23   82.4   0.7    1.3  1  HAGH_C         Hydroxyacylglutathione hydrolase C-terminus
    1.2e-21   77.6   0.0    5.8e-20   72.1   0.0    2.2  1  Lactamase_B    Metallo-beta-lactamase superfamily
    2.2e-06   27.3   0.0    3.8e-06   26.6   0.0    1.4  1  Lactamase_B_2  Beta-lactamase superfamily domain
    0.00037   20.4   0.0    0.00056   19.8   0.0    1.2  1  Lactamase_B_3  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.022   14.2   0.0       0.13   11.7   0.0    2.0  2  Lactamase_B_6  Metallo-beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> HAGH_C  Hydroxyacylglutathione hydrolase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.7   6.7e-27   2.4e-23       1      80 []     166     251 .]     166     251 .] 0.87

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 6.7e-27
      HAGH_C   1 EYtlsNlkFalsvepdnealkkrlkevkelrakgeptvpstladEkktNpFLRldepevqkavg.ee.....vevfaaLRelKdnF 80 
                 EYtl+N+kFals+ pd++++++++++v+elrak++ t+p+tl++E+++N FLR+++ ++ ++++ e+     v+ fa+LR++Kd+F
  CTQ26556.1 166 EYTLANMKFALSILPDDRDINDYYHKVNELRAKKQKTLPVTLKNERRINLFLRVNDIDLIDKINkETnlqhsVARFAWLRSKKDDF 251
                 9*****************************************************855554444421134457************99 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   1.6e-23   5.8e-20       9     197 .]      15     165 ..       9     165 .. 0.90

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 1.6e-23
                  EEEE.ETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCHCGCC CS
  Lactamase_B   9 ylie.gdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagvsadk 105
                  +++  ++g++i++D+G  ++   a      ++ ++ +++a++lTH+H DH+Gg++ l+e+++  v++ ++e+     + +                  
   CTQ26556.1  15 WVLSeNNGRCIIVDPGEAAPVLAA------IEENQWQPEAILLTHHHQDHVGGVKQLREKFPSIVVYGPAET----QDKG------------------ 84 
                  4444499**************998......8*****************************998887766654....4444.................. PP

                  EEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHHCHSEEEE.SS CS
  Lactamase_B 106 pdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaevrdpsdaekyldsllklaglkaevlvp.gH 197
                    v++ ++dg+++++++  +    ++gh+ g+++y ++ +lf+GD+ ++g  gr+ +          + ae+  +s+ k+ +l+ e+l++ +H
   CTQ26556.1  85 --VTQVVGDGDRLSILGHDFSIFSTPGHTLGHICYYSEPYLFCGDTMFSGGCGRLFE----------GTAEQMYQSFMKINALPEETLICcAH 165
                  ..67779**************************************************..........99999999************999888 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.1e-09   3.8e-06       3      68 ..      25      82 ..      23      96 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.1e-09
                   EEES--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHH CS
  Lactamase_B_2  3 iLiDagpdlrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvla 68
                   i++D+g    ++ l a       ++  + +a+llth H DH+ g+  lre  p ++ +y+p+++++
     CTQ26556.1 25 IIVDPGEA--APVLAAI-----EENQWQPEAILLTHHHQDHVGGVKQLREKFP-SIVVYGPAETQD 82
                   67777777..3333333.....222346789*******************444.5999***99987 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.5e-07   0.00056      10      86 ..      15      93 ..      10     118 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.5e-07
  Lactamase_B_3 10 fllet.agarilvDPfka...nlgyeppaeeaDlvlisqaledHahletlkqlaenvkvleegeslevggleiravatshd 86
                   ++l+  +g  i+vDP++a    +  e+++ +++++l++++++dH     +kql e+++ +   + +e ++  +++v ++ d
     CTQ26556.1 15 WVLSEnNGRCIIVDPGEAapvLAAIEENQWQPEAILLTHHHQDHV--GGVKQLREKFPSIVVYGPAETQDKGVTQVVGDGD 93
                   55555279********776545566667789**********9996..5666666688877777777777777777766655 PP

>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.5e-05      0.13       6      71 ..      22      76 ..      16     103 .. 0.78
   2 ?    0.1   0.0      0.13   4.5e+02     102     125 ..     181     204 ..     143     213 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.5e-05
  Lactamase_B_6  6 nvkiLlDvGwdeskvslesalkelekviptvdliLLshatlehlGayallyakfksklllnipvya 71
                   + +i++D+G          +l+ +e+   + ++iLL+h  ++h+G+   l  kf+     +i vy+
     CTQ26556.1 22 GRCIIVDPGEAAP------VLAAIEENQWQPEAILLTHHHQDHVGGVKQLREKFP-----SIVVYG 76
                   4578899998764......578888888999***************877777665.....455665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.13
  Lactamase_B_6 102 eledideafdkiktlkYsQklelk 125
                    +  di+ ++ k+++l+ + +++l+
     CTQ26556.1 181 DDRDINDYYHKVNELRAKKQKTLP 204
                    5589***********988887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2125.55
//
Query:       CTQ26557.1  [L=240]
Description: putative S-adenosyl-L-methionine-dependent methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-09   38.9   0.0    1.6e-09   38.3   0.0    1.3  1  Methyltransf_11  Methyltransferase domain
     0.0025   18.5   0.0      0.004   17.8   0.0    1.3  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   1.8e-13   1.6e-09      44      95 ..      73     124 ..      34     125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 1.8e-13
                      EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  44 kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGllv 95 
                      +   v+ad  +lpf+++s+D++++ ++l ++ dp+++l+e+ RvL  +G+++
       CTQ26557.1  73 NPMQVRADPLHLPFAEKSVDACLLAHTLPWCSDPHRLLREADRVLIDDGWMI 124
                      2233899999***************************************998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.5e-07     0.004      50      97 .]      76     121 ..      50     121 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.5e-07
                      EEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  50 fvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                       v++d  +lpf+++s+D+++++++l ++s  d +++l+e+ rvL ++G
       CTQ26557.1  76 QVRADPLHLPFAEKSVDACLLAHTLPWCS--DPHRLLREADRVLIDDG 121
                      4779999**************98899988..5569*********8887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 2052.62
//
Query:       CTQ26560.1  [L=293]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-42  145.5   0.2    1.6e-42  145.2   0.2    1.1  1  LysR_substrate  LysR substrate binding domain
    3.2e-18   65.4   0.1    3.2e-18   65.4   0.1    1.7  2  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   0.2   1.8e-46   1.6e-42       2     207 ..      86     289 ..      85     291 .. 0.97

  Alignments for each domain:
  == domain 1  score: 145.2 bits;  conditional E-value: 1.8e-46
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                     ++++g+Lr+++ +tl +y +p++l+rf++r P+v+l+l++ +  ++ d+l++ e+Dl++ ++  +d+ l++ +L+++ l lvas +   a  +  
      CTQ26560.1  86 DEPGGELRVATGETLLAYKMPRVLQRFKQRAPKVRLSLQSLNCYSIRDALLADEVDLGVFYRVGNDDALTIMELGQQSLTLVASVEQ--APVDFM 178
                     689***********************************************************************************5..678888 PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTC CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgr 191
                     ++++   + +i  e+++ +r+ +e  lr+++++++ ++e+ s+e+++++va +lG+++lpr+av+del++g lv lp++e pl+ +  +++++g+
      CTQ26560.1 179 RPRQHIPLSFIINEPQCVFRQIFESTLRQREITLENTIELWSIESIKQCVAGNLGVSFLPRFAVEDELKRGTLVELPFSETPLTIHALCAHHAGK 273
                     99999999*************************************************************************************** PP

                     CCHHHHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidflrea 207
                       spa+r f+++++e+
      CTQ26560.1 274 AISPAMRVFMQCMQEE 289
                     *************997 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.1   3.6e-22   3.2e-18       1      60 []       3      62 ..       3      62 .. 0.97
   2 ?   -3.6   0.3       1.3   1.1e+04      15      22 ..      77      84 ..      76      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 3.6e-22
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr++ +f++v+eegsf rAA++L  +q++v+ +i++LE+el  pLfe+ gr++ LT+aG+
  CTQ26560.1  3 LRRFITFKTVVEEGSFLRAAQKLCCTQSTVTFHIQQLEQELAIPLFEKIGRRMCLTAAGK 62
                68899*****************************************************95 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.3
                SHHHHHHH CS
       HTH_1 15 sftrAAee 22
                s+++AA++
  CTQ26560.1 77 SIRQAARQ 84
                8999**96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2176.00
//
Query:       CTQ26561.1  [L=196]
Description: neutral amino-acid efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-10   40.3  15.7    2.9e-10   39.9  15.7    1.2  1  LysE        LysE type translocator


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9  15.7   1.6e-14   2.9e-10       2     191 ..      15     195 ..      14     196 .] 0.82

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.6e-14
        LysE   2 slllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksveaslvkpf 100
                 +++l+pGp+n+l l+   ++g + ++ v++g+ +g ++ +l+ +     L++  + ++ +l ++G+ay lwl+++ ++++  +   + + v       f
  CTQ26561.1  15 ITALTPGPNNILALSSVTSHGLRRSLRVLAGMSVGFIITMLICAALTFSLVELDSRFTLVLGWIGAAYILWLAWQIAKSKPATGTPSVEPV------GF 107
                 789**********************************99999888888888889************************9998886444444......49 PP

        LysE 101 lkglllslsNPkailfwlsvisallakaeqygdagr...lilaaglvvasliwfsllaflaarlsrrlsskkvlriinvvvgvlligfavklll 191
                  + l l + N k il+ +  +s+++ ++  ++++ +   l+laa+  ++ l+w  l ++l++rl     +      +n ++++ll++ av++++
  CTQ26561.1 108 WASLGLQFVNVKIILYGITALSTFVLPVTREPVWLIsvsLLLAAIGALGNLCWA-LAGHLFQRLFLLYGR-----QLNWMLAALLVYCAVRIVV 195
                 999***********************8766666654222556677777777774.556666666544433.....4788999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1562.51
//
Query:       CTQ26562.1  [L=256]
Description: putative C-N hydrolase family amidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.3e-32  110.5   0.1    9.4e-32  110.4   0.1    1.0  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.1   5.2e-36   9.4e-32       2     260 ..       6     241 ..       5     242 .. 0.89

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 5.2e-36
                   EEEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBSSSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEECCTTEEEEEEEE CS
  CN_hydrolase   2 vAvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgykeeahfleaAeaglgetlallaalarkngiavvigliereltngklqaynta 98 
                   + + Q p +++d  anl +  + ++++   g d+ivlPE+f tg+  ea    + e   + ++++++a a++ + ++++  + +  t+      n+ 
    CTQ26562.1   6 ISLLQQPLVWMDGPANLRHFDRQLEGIT--GRDVIVLPEMFTTGFAMEAAKQSLPE---ADVVEWMHARAAQSQALIAGSAALQ--TEHGA--VNRF 93 
                   6778999999999999999999999944..99*************66666666555...5999999999999999999998888..55555..6*** PP

                   EEEETTSEEEEEEE-SS--EECTTSCECCGHHTSCS-SSS-EEEETTEEEEEEEGGGGGSHHHHHHHHHTT-SEEEEBH.GCCCTCHHHHHHHHHHH CS
  CN_hydrolase  99 vlldldgklvgkyrKlhLfpgeprpptaverelfepgdgipvfdtpvgkiGaaiCyeigfpellralalkgaeilvnlserapvpksmgppqwellg 195
                   +l+++dg+ v  y+K+hLf        a e + +e+g++  vf+ ++++i  ++Cy+ +fp  +r   +++ ++ ++++     + ++   +w+ l 
    CTQ26562.1  94 LLVEPDGT-VHHYDKRHLF------RMADEHHHYEAGNQRVVFEWRGWRILPLVCYDLRFPVWSRN--QNDYDLALYVA----NWPAPRSLHWQSLL 177
                   ********.7*********......6999**********99************************5..66666666633....6789999******* PP

                   HHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEHHHHHHHH CS
  CN_hydrolase 196 raralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaeidladvratr 260
                    ara+en+ +v+ +n+vg+   ++ ++ g S+ii+p+G+i+a ++  + + l ae+ l+ ++++r
    CTQ26562.1 178 IARAIENQAYVAGCNRVGT-DGNGHHYRGDSRIINPQGEIIATADPHQATRLDAELSLSALQEYR 241
                   *******************.999999******************99999*************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2177.00
//
Query:       CTQ26563.1  [L=814]
Description: acyl coenzyme A dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.9e-119  396.8   0.0   7.9e-119  396.4   0.0    1.2  1  DUF1974        Domain of unknown function (DUF1974)
      2e-17   63.9   0.1    7.2e-17   62.1   0.1    2.0  2  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
    2.2e-12   47.5   2.4    4.9e-12   46.3   2.4    1.6  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    2.9e-09   37.0   0.0    5.5e-09   36.1   0.0    1.4  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain


Domain annotation for each model (and alignments):
>> DUF1974  Domain of unknown function (DUF1974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  396.4   0.0  1.8e-122  7.9e-119       1     284 []     514     792 ..     514     792 .. 1.00

  Alignments for each domain:
  == domain 1  score: 396.4 bits;  conditional E-value: 1.8e-122
     DUF1974   1 iRCHPYvlkemeaaqsedkekalkaFdkalfghigfvvsnalrslvlgltggrlasapvagetkryyrqlnrlSaafAllaDlallvLGGeLKrkerls 99 
                 iRCHPYvl+em+aaq++d    l+a+dk+lf+hig+v sn +rs++lgltggr++sap++++t+ryy+q+nrlSa++All+D++++vLGG+LKr+er+s
  CTQ26563.1 514 IRCHPYVLEEMAAAQNND----LNAYDKLLFKHIGHVGSNKVRSFWLGLTGGRTSSAPTRDATRRYYQQMNRLSANLALLSDVSMAVLGGSLKRRERIS 608
                 8*****************....***************************************************************************** PP

     DUF1974 100 aRlgDvlSqLYlasavLkrfedegrqeedlplvhwalqdalaqaeealdellaNfpnrvvalllrllvfplgrrakkpsDklkhevaelllepseardr 198
                 aRlgDvlSqLYlasavLkr++degr+e+dlplvhw +qdal+qae+a+d+ll+Nfpnr+va+++rl++fp+gr++++psD+l+h+va++l+ ps++r+r
  CTQ26563.1 609 ARLGDVLSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALHQAEQAIDDLLDNFPNRLVAGVMRLVIFPTGRHHHAPSDRLDHQVAKILQVPSATRSR 707
                 *************************************************************************************************** PP

     DUF1974 199 LtagvylpedeedplgrlekafkavlaaeplekklkkaikkgklkklkleelleealekgviteeeaelleeaeelrldviqVDdF 284
                 + +g+yl+ +e++p+g le+a+ +v+aa+p++++++k   k+ l++++l+el+++al+kg+i+++ea+ l++ae+ rl++i+VDdF
  CTQ26563.1 708 IGRGQYLTPSEHNPVGLLEEALLEVMAADPIHQRICKELGKN-LPFTRLDELAHNALAKGLISQDEAAILTRAEHSRLRSINVDDF 792
                 ***************************************966.******************************************9 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.1   1.6e-20   7.2e-17      19     112 ..     139     232 ..     121     233 .. 0.83
   2 ?   -2.7   0.0         2   9.2e+03      63     106 ..     516     556 ..     509     557 .. 0.74

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 1.6e-20
                    THHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTH.HHHHHHS-HHHHHHHHHHHHTT CS
  Acyl-CoA_dh_N  19 laphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslva.pailrfGteeqkrryLpklasg 112
                    +++ a  + e +  p elw  l+e+ ++++ +++eygG+++++ ++a v+++l+ ++  la+++gv +sl+  + + ++Gteeqk++yLp+la+g
     CTQ26563.1 139 ANDFAITH-EMADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQARVLQKLSGVSGILAITVGVPNSLGPgELLQHYGTEEQKNHYLPRLARG 232
                    33333333.3335799*******************************************************559*******************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2
                    HHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHHS-HHHHHHHH CS
  Acyl-CoA_dh_N  63 eaaivaeelaradaglalllgvhsslvapailrfGteeqkrryL 106
                    ++  v+ee+a+a       l++ + l ++ i + G+ + +  +L
     CTQ26563.1 516 CHPYVLEEMAAAQNN---DLNAYDKLLFKHIGHVGSNKVRSFWL 556
                    556688888887666...56778888888899999998888887 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   2.4   1.1e-15   4.9e-12       1     142 [.     360     504 ..     360     508 .. 0.93

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 1.1e-15
                    TBHHHHHTTTT--S-.----..-SHHHHHHHHHHHHHHHTSB-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH CS
  Acyl-CoA_dh_1   1 gkGfrvametlnheR.lavaaaalglarraleealeyarrrkafgkplidhqlvreklaemaaeleaarllvyraaealdagkpdraeasmaKlfa 95 
                    g+G+r   e l ++R +++   a g ++++   + +ya+ r++f+  +++ + + e la++a ++ ++ +++  +++++  g+++ + ++++K+ +
     CTQ26563.1 360 GQGWRMLVECLSVGRgITLPSNATGGLKSVAMATGAYAHIRRQFKISIGKMEGIEEALARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHC 455
                    79*************445667899************************************************************************ PP

                    HHHHHHHHHHHHHHHGGGTTS.GGGH.HHHHHHHTHHHHHSSS-HHHHH CS
  Acyl-CoA_dh_1  96 selaqevadlamqllGgaGyl.eeyp.verlyrdarvlrigeGtseiqr 142
                    ++  q+ + +am++ Gg+G++  e+  ++r+y+ a +    eG++   r
     CTQ26563.1 456 THRGQRSIIDAMDITGGKGIMlGEGNfLARAYQGAPIAITVEGANILTR 504
                    ********************9544448****************986555 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   1.2e-12   5.5e-09       1      79 [.     237     328 ..     237     339 .. 0.81

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.2e-12
                    EEE---SS-SS-GGG---EE..EEETT.E.....EEEEEEEEEEETTTT-SEEEEEEE....TS---.....----EEEEEEE..GGGEEE---- CS
  Acyl-CoA_dh_M   1 afalTEpqaGsdvasvktta..aerdgge.....yvlnGeKiwitnaaiatlalvlar....tekpd.....rarglslflvprdapgvsvrrie 79 
                    +falT p+aGsd+ ++  t     +d ++     ++l+++K++it a+iat++ + ++        +     ++ g++++l+p+++pgv+++r +
     CTQ26563.1 237 CFALTSPEAGSDAGAIPDTGvvCMGDWQGqqvlgMRLTWNKRYITLAPIATVLGLAFKlsdpD---RllggeEELGITCALIPTSTPGVEIGRRH 328
                    9**************9854422333333356999************************75440...255666699****************8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5903.71
//
Query:       CTQ26564.1  [L=193]
Description: D-sedoheptulose 7-phosphate isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-32  110.0   0.2    1.2e-31  109.5   0.2    1.2  1  SIS_2           SIS domain
    8.7e-08   32.1   0.0    1.6e-07   31.2   0.0    1.4  1  SIS             SIS domain
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.14   12.0   0.0    1.2  1  Antibiotic_NAT  Aminoglycoside 3-N-acetyltransferase


Domain annotation for each model (and alignments):
>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.2   2.1e-35   1.2e-31       5     138 .]      12     146 ..       9     146 .. 0.89

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 2.1e-35
                 HHHHHHHHHHHH..SHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST..THHHHHTT-TTHHHHHHHHTT- CS
       SIS_2   5 evteilerivet..qaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaragglaeferialpalalhtdaeatkssalerdegyakqilrlvrl 101
                 e++e+l+++ +   + +ai++aa l+ads ++ggkvl +G+G+S+ +a+++a ++ g++  +r++ pa+a ++    ++ s++++d gy   ++r v+ 
  CTQ26564.1  12 EAAETLANFLQDeaNIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDV---SHLSCVSNDFGYEYVFSRYVES 107
                 55566666654412678******************************************************765...6999999999999999999554 PP

                 ..-TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2 102 ..kpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                   ++gDvLl iS+sGn+ +v++a+eaa+++gmkvi lt+
  CTQ26564.1 108 vgRAGDVLLGISTSGNSGNVIKAIEAARAQGMKVITLTG 146
                 44***********************************97 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   2.7e-11   1.6e-07      52     105 ..     110     163 ..      95     165 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 2.7e-11
                 STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEE CS
         SIS  52 deddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlalyin 105
                 + +d+++ is+sg++ ++++a+e a+++g+k+i++T+++g  +a +ad+ ++++
  CTQ26564.1 110 RAGDVLLGISTSGNSGNVIKAIEAARAQGMKVITLTGKDGGKMAGSADVEIRVP 163
                 579*********************************************999875 PP

>> Antibiotic_NAT  Aminoglycoside 3-N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.3e-05      0.14     115     151 ..      37      72 ..      17     132 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
                     HHHHHHSTEEEEEEB--GGG-TTHHHHTTSS..S--- CS
  Antibiotic_NAT 115 lgrlyelggkvLllGvglernTalHlaEeradvpnkr 151
                     l+   ++ggkvL  G g + + a+H aEe+ +  +++
      CTQ26564.1  37 LADSFKAGGKVLSCGNGGSHCDAMHFAEELTGR-YRE 72 
                     5566789***********************984.222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1555.74
//
Query:       CTQ26565.1  [L=170]
Description: putative glutamine amidotransferases class-II (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-67  225.0   0.0    8.8e-67  224.9   0.0    1.0  1  GATase_4  Glutamine amidotransferases class-II
  ------ inclusion threshold ------
      0.095   12.9   0.0       0.21   11.8   0.0    1.7  2  GATase_6  Glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.9   0.0   9.9e-71   8.8e-67      87     252 ..       2     167 ..       1     170 [] 0.98

  Alignments for each domain:
  == domain 1  score: 224.9 bits;  conditional E-value: 9.9e-71
    GATase_4  87 klenthpFvRelwgrewifAHnGdlkeykpklegrfePvGsTDsElafCelleelasrfekaepsaeeleralaelakeiaelGvfnlllsdgralfah 185
                 +lenthpF+Relwgr+w++AHnG+lk+yk   +g+f+PvG+TDsE afC+ll++l++r++ ++ ++  +++ +a+la e+ e+Gvfn+llsdgr+++a+
  CTQ26565.1   2 ALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAF 100
                 689**********************************************************9************************************* PP

    GATase_4 186 astrLvyilRkaPfgeaelkdedlevdfeevttkedrvavvatepLtrdetWkklepGellvfrdGa 252
                 +st+L++i+R+aPfg a+l d+d+e+df+++tt++d v+v+at+pLt +etW+k+ pGe+ +f  G+
  CTQ26565.1 101 CSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGE 167
                 **************************************************************99887 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.4e-05      0.21      31      83 ..       4      55 ..       1      86 [. 0.66
   2 ?   -2.0   0.0      0.41   3.7e+03      28      41 ..     139     151 ..     106     159 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.4e-05
    GATase_6 31 ga.qPf..psedgrlllvhNGeiynykelreelpalkglafrsrsDtevlla.llee 83
                ++ +Pf      ++++++hNG+ + yk+l+            +++D+e  +  ll++
  CTQ26565.1  4 ENtHPFtrELWGRNWTYAHNGQLKGYKSLKTGNFH-----PVGETDSEKAFCwLLHR 55
                45599963333566************966654333.....34466777655544455 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.41
    GATase_6  28 eeegaqPfpsedgr 41 
                 +  + qP+ +++++
  CTQ26565.1 139 TVIATQPL-TANET 151
                 22333666.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1402.91
//
Query:       CTQ26566.1  [L=246]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-06   28.9   0.2    2.9e-06   27.7   0.0    1.5  2  YkuD      L,D-transpeptidase catalytic domain


Domain annotation for each model (and alignments):
>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.6e-10   2.9e-06       2     139 ..      44     159 ..      43     173 .. 0.78
   2 ?   -2.2   0.0      0.29   5.1e+03      62     100 ..     173     204 ..     162     211 .. 0.50

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.6e-10
                 EEEEEETTTTEEEEEEETTEEEEEEE.......-BEB....TTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTTCECC CS
        YkuD   2 kyivvdlaeqrllvlyengklvlsfp.......vsvG....gkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskvalgk 89 
                  yi++ ++e r+l ly + +++++          s G    ++++gd++ P+G + +++ + +p++++++ i ++ +     +d+              
  CTQ26566.1  44 VYIEIFKEE-RMLDLYVKMGETYQLLdsyricnYS-GglgpKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNA---YDR-------------- 123
                 589999999.8888877766555544455565422.2588*99999*************************97665544...333.............. PP

                 CCEEE-STTS-EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHH CS
        YkuD  90 vkfvfpngsgiyiHgtgapdlfergkgarrShGCirlseedakelyelvl 139
                   +  + g+   iH            g++ S GC +++++ + e++++v+
  CTQ26566.1 124 --AHGYEGKYLMIH------------GDCVSVGCYAMTDSGIDEIFQFVT 159
                 ..34678999****............3699******************96 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.29
                 GGT--TTSTT.EEEEEEEECCCTTCECCCCEEE-STTS- CS
        YkuD  62 iarkeiypklrkdpeyldkknskvalgkvkfvfpngsgi 100
                 i+ +++ + + ++ +y+        + +++++ + g+++
  CTQ26566.1 173 IYPFRMTNANMERHKYSY-------YADFWKQLKPGYDY 204
                 444444444443333333.......34445555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1984.32
//
Query:       CTQ26567.1  [L=75]
Description: exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 592.85
//
Query:       CTQ26568.1  [L=447]
Description: Na(+)-translocating NADH-quinone reductase subunit A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-108  362.3   0.0   1.6e-108  362.0   0.0    1.1  1  NQRA             Na(+)-translocating NADH-quinone reductase s
    3.7e-22   78.7   0.5    7.9e-22   77.6   0.5    1.6  1  NQRA_SLBB        NQRA C-terminal domain
    7.2e-07   29.1   0.1    1.3e-06   28.3   0.1    1.4  1  RnfC_N           RnfC Barrel sandwich hybrid domain
    0.00019   21.2   0.2     0.0006   19.6   0.0    1.9  2  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
      0.036   13.9   0.1      0.092   12.6   0.1    1.6  1  Biotin_lipoyl    Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> NQRA  Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.0   0.0  4.6e-112  1.6e-108       1     257 []       1     257 [.       1     257 [. 1.00

  Alignments for each domain:
  == domain 1  score: 362.0 bits;  conditional E-value: 4.6e-112
        NQRA   1 mikikkGldlpikGapeqeiedakavkkvallgedyvglkpklkvkegdkVkkGqvlfedKknpgvlftspasGevveinrGekRvlqsvvievdgdee 99 
                 miki+kGldlpi+G p q+i+ a+avk+vallge+yvg++p ++vkegd+VkkGq+lfedKk pgv+ft+pasG v++i+rGe+Rvlqsvvi+++g+++
  CTQ26568.1   1 MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDA 99 
                 8************************************************************************************************** PP

        NQRA 100 eefekfskkelaslsreevkeqLlksGlwtalrtrPfskvaapdsepkaifvsamdtnPlaadpeviikeeeeafqaglkvlskLtegkvhvckkkeaa 198
                 ++f++++++ la+l r++v++qLl+sG+wtalrtrPfsk++ p s+p+aifv+amdtnPlaa+p+ ii  e++af+agl+vl++Lt+gkvhvc+ ++ +
  CTQ26568.1 100 VAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGK 198
                 *************************************************************************************************** PP

        NQRA 199 lplaelekvelhefsGphPaglvgthihfidpvskektvwtisyqdviaiGklfltGel 257
                 l  + l +v  ++fsGphPagl+gthihf++pvs +k+vw+++yqd iaiGklfl Gel
  CTQ26568.1 199 LGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGEL 257
                 *********************************************************86 PP

>> NQRA_SLBB  NQRA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.5   2.2e-25   7.9e-22       1      50 [.     262     311 ..     262     312 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 2.2e-25
   NQRA_SLBB   1 viAlaGpavkkprlvrtrlGaslsdllagelksgevRvISGsVLtGrkvs 50 
                 +iAl+Gp+v+ prlv+t+lGasl+dllagel++ge+RvISGsVL+G++++
  CTQ26568.1 262 IIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAH 311
                 7**********************************************986 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   3.6e-10   1.3e-06      20      84 ..      19      83 ..      15      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 3.6e-10
      RnfC_N 20 pieklplpkelvlplsqhiGapakplvkvgdkVlkGqkiaeaegfvsapvhasvsGtVkaiekrl 84
                +i+ +p+ k++ l  +  +G++  + vk+gd+V+kGq++ e +++  +   a+ sG V ai+  +
  CTQ26568.1 19 QISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGE 83
                7888899999999999****************************99***************8643 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.7e-07    0.0006      17      32 ..      44      59 ..      42      59 .. 0.92
   2 ?   -3.5   0.0       2.8     1e+04       7      16 ..      70      79 ..      69      80 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.7e-07
  Biotin_lipoyl_2 17 nVkdGqrVkaGdvLae 32
                     +Vk+G+rVk+G++L+e
       CTQ26568.1 44 AVKEGDRVKKGQILFE 59
                     7*************96 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.8
  Biotin_lipoyl_2  7 apvsGrVaql 16
                     ap sG V+++
       CTQ26568.1 70 APASGIVSAI 79
                     799****998 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.6e-05     0.092      17      59 ..      41      82 ..      28      89 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.6e-05
                   CSESSSTTCEE-TTSEEEEEECTTEE..EEEEBSSSEEEEEESST CS
  Biotin_lipoyl 17 vevlvkvGdkVkagqvlaeveamKme..meieapkaGvvkeilvk 59
                    ++ vk+Gd Vk+gq+l e   +K    + ++ap++G+v+ i+  
     CTQ26568.1 41 PAMAVKEGDRVKKGQILFE---DKKIpgVCFTAPASGIVSAIHRG 82
                   5678***********9986...55432367899999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 3294.99
//
Query:       CTQ26569.1  [L=412]
Description: Na(+)-translocating NADH-quinone reductase subunit B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-107  359.7  27.0   1.3e-107  359.5  27.0    1.0  1  NQR2_RnfD_RnfE  NQR2, RnfD, RnfE family


Domain annotation for each model (and alignments):
>> NQR2_RnfD_RnfE  NQR2, RnfD, RnfE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.5  27.0  7.5e-112  1.3e-107       2     291 ..      41     405 ..      40     406 .. 0.97

  Alignments for each domain:
  == domain 1  score: 359.5 bits;  conditional E-value: 7.5e-112
  NQR2_RnfD_RnfE   2 vsssphvrdkestkrimldvliallpallfgvynfglqa..................................................lllilv 46 
                     ++ ++hvrd++++kr+m+ v++a++pa+++g+yn+glq+                                                  l+++++
      CTQ26569.1  41 TRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTipalhklygaeqlqqaiannwhysvaqwlgvsfsadagwlsmmtlgavffLPIYIT 135
                     56789****************************************************************************************** PP

  NQR2_RnfD_RnfE  47 avvvavlaEvlfaklrkkevkvtdlsavvtglLlalilPptlplwvvvigsvfaivvvKelfGGlGqNifNPAlvgrafllisfpaqmt....wv 137
                      ++v+ ++Evlfa++rk+e+   +++++vt++L+ali+Pptlplw++++g+ f++v++Ke+fGG+G+N++NPAl+grafl++++paq++    w+
      CTQ26569.1 136 VFIVGGFWEVLFAIVRKHEI---NEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISgdlvWT 227
                     ********************...********************************************************************9998 PP

  NQR2_RnfD_RnfE 138 a.DavsgatpLaalk...........s...aslldlflgniagsigetsalalllgglyLlvrkiiswripvsvlatvavlsllfn........l 209
                     a D++sgatpL++++           +    s++d+flgni+gsige+s+l++++gg+++l+ +++swri+++v+++++++++lfn        +
      CTQ26569.1 228 AaDGFSGATPLSQWAsgggealvnvaTgvpVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNvigsdtnpM 322
                     67*************99999888776156789**************************************************************9 PP

  NQR2_RnfD_RnfE 210 laapplfhllsGglllgafFmatdpvtspitkkGklifglliGlltvliRvfg.aypeGvafaiLlmNllvplidkltrprnf 291
                     +a+p+++hl++Gg+++g++Fmatdpv++++t kGk+ +g+liG+++vliRv++ aypeG+++aiL++Nl++pl+d+l++++n+
      CTQ26569.1 323 FAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNpAYPEGMMLAILFANLFAPLFDYLVVQANI 405
                     9*******************************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3174.89
//
Query:       CTQ26570.1  [L=264]
Description: Na(+)-translocating NADH-quinone reductase subunit C [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-15   55.5   0.0    1.3e-14   54.5   0.0    1.5  1  FMN_bind  FMN-binding domain


Domain annotation for each model (and alignments):
>> FMN_bind  FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0     7e-19   1.3e-14       1      67 [.     149     243 ..     149     245 .. 0.79

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 7e-19
                 SSSSEEEEEEEEETTTS.BEEEEEEEESSS-TTT.GGG.......................CTTHHHH.....SSEEETCTTBHHHHHHHHHHHHHH CS
    FMN_bind   1 Gyggtikvlvtvkdgdg.tItgievlehsETpgl.gsk.......................avkkdgg.....dqevDaiSGATissravkdavnaa 67 
                 G++++++++v++ d dg t++gi++++++ETpgl g+                        +v k  g      + vD++SGAT++s++v+   + +
  CTQ26570.1 149 GLWSMMYAFVAL-DVDGrTVKGITYYDQGETPGLgGEVenpnwrqqfvgkqvlddngmpalKVVKG-GaragdLHAVDGLSGATLTSNGVQHSFDFW 243
                 89**********.99999****************66646999998888776666555544322222.145667778**************9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1962.04
//
Query:       CTQ26571.1  [L=212]
Description: Na(+)-translocating NADH-quinone reductase subunit D [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-59  201.5  15.8    1.1e-59  201.3  15.8    1.0  1  Rnf-Nqr        Rnf-Nqr subunit, membrane protein
  ------ inclusion threshold ------
       0.24   10.5   7.5       0.49    9.5   6.7    1.7  2  ICE2           ICE2
       0.35   11.0   3.6        2.3    8.4   0.0    2.9  3  YrhC           YrhC-like protein


Domain annotation for each model (and alignments):
>> Rnf-Nqr  Rnf-Nqr subunit, membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.3  15.8   1.9e-63   1.1e-59       3     174 .]      12     198 ..      10     198 .. 0.98

  Alignments for each domain:
  == domain 1  score: 201.3 bits;  conditional E-value: 1.9e-63
                 HHHHHHHHHTS-TTTTT--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHT------THHHHHHHHHH CS
     Rnf-Nqr   3 killsgilkeNpvlvqflGiCpflavskklknalgmglavtfvlvlsnlvisllrklipkklriivfilviAalvtlvelvlkaflpslykaLgiflpL 101
                 ++l+ +++ +Np+  q+lG+C++lav++kl++a++m++avt+v+++s+++is++r++ip+++riiv++++iA+lv++v+++l+af+++ +k+L++f++L
  CTQ26571.1  12 RVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGL 110
                 578899********************************************************************************************* PP

                 HHS-HHHHHHHHT--------THHHHHHHHHHHHHHHHHHHHHHHHHHTS-SSS................-----SHHHHHHHHHHHH CS
     Rnf-Nqr 102 ivvNCiilgraeafasknsvleslldglgsglGftlalvllaairellgkGtlig...............lilagllagaFlglggli 174
                 i++NCi++graea+a+k+++l+s++dg+g+glG+ ++l++++++rel+g+G l+g               + l++l++ aF+++g+li
  CTQ26571.1 111 IITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGitvletvqnggwyqpNGLFLLAPSAFFIIGLLI 198
                 *************************************************************************************986 PP

>> ICE2  ICE2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   6.7   8.2e-05      0.49      14      95 ..      20     110 ..      13     169 .. 0.71
   2 ?    0.4   0.0     0.047   2.8e+02      54      84 ..     177     207 ..     125     212 .] 0.57

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 8.2e-05
        ICE2  14 ltiPlafdvGGlecGLafsltlfllYfvlttlkllarrss....rlr.lla.sllyylqhlvipsLLilf...Lsrfsedaskveetllev 95 
                    P+a +v G+ + La +  l + ++++ +++l++  ss     +r ++  s+  ++q+ +i+sL+i++   L+ f+ ++sk+ ++++ +
  CTQ26571.1  20 ANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSmfisMIRhHIPnSVRIIVQMAIIASLVIVVdqlLRAFAYETSKQLSVFVGL 110
                 566******************************9999887445323333331344567889999999875333666766655555554444 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.047
        ICE2  54 rlrllasllyylqhlvipsLLilfLsrfsed 84 
                  +     +l +   ++i +LLi++L+ ++ +
  CTQ26571.1 177 WYQPNGLFLLAPSAFFIIGLLIWALRSWKPE 207
                 4444445566667799999999999988654 PP

>> YrhC  YrhC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.6     0.035   2.1e+02      35      63 ..      37      65 ..      28      70 .. 0.71
   2 ?   -2.5   0.0      0.95   5.7e+03      25      31 ..     107     113 ..      92     125 .. 0.73
   3 ?    8.4   0.0   0.00039       2.3      13      30 ..     181     198 ..     177     206 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.035
        YrhC 35 ketlkksillgaivvfLllaflflrrskk 63
                ++t  ++ +++ i+v+L+ af+ + +s++
  CTQ26571.1 37 VTTKLETAFVMTIAVTLVTAFSSMFISMI 65
                56666677778888999999887666665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.95
        YrhC  25 yiGlviP 31 
                 ++Gl+i 
  CTQ26571.1 107 FVGLIIT 113
                 4566665 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00039
        YrhC  13 FafvLLalsaFLyiGlvi 30 
                  ++ LLa saF+ iGl+i
  CTQ26571.1 181 NGLFLLAPSAFFIIGLLI 198
                 5789************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1130  (0.0630264); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1638.72
//
Query:       CTQ26572.1  [L=198]
Description: putative inner membrane subunit of an electron transport system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-59  198.6  18.3    8.3e-59  198.5  18.3    1.0  1  Rnf-Nqr   Rnf-Nqr subunit, membrane protein
  ------ inclusion threshold ------
       0.67   10.1   5.6        2.7    8.1   0.2    2.8  3  DUF2456   Protein of unknown function (DUF2456)


Domain annotation for each model (and alignments):
>> Rnf-Nqr  Rnf-Nqr subunit, membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.5  18.3   9.3e-63   8.3e-59       1     173 [.       4     196 ..       4     197 .. 0.98

  Alignments for each domain:
  == domain 1  score: 198.5 bits;  conditional E-value: 9.3e-63
                 --HHHHHHHHHTS-TTTTT--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHH------...........---HHHHHHHHHHHHHHHHHHT---- CS
     Rnf-Nqr   1 llkillsgilkeNpvlvqflGiCpflavskklknalgmglavtfvlvlsnlvisllrklipk...........klriivfilviAalvtlvelvlkafl 88 
                 +++++++++++eN++l+ flG+C+flavskk+++a+g+g+avt+vl l+  ++ l+++l+++           +l++i+fi viAalv+++e++l++++
  CTQ26572.1   4 YISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRdgalvegvdlsFLNFITFIGVIAALVQILEMILDKYF 102
                 6789*********************************************************9************************************* PP

                 --THHHHHHHHHHHHS-HHHHHHHHT-----.---THHHHHHHHHHHHHHHHHHHHHHHHHHT........S-SSS.-----SHHHHHHHHHHH CS
     Rnf-Nqr  89 pslykaLgiflpLivvNCiilgraeafaskn.svleslldglgsglGftlalvllaairellg........kGtliglilagllagaFlglggl 173
                 p+ly+aLgiflpLi+vNC+i+g + +++++  ++ es+++g+gsg+G++la+v++a+ire+++        +G+ i++i++gl+a++F+ ++g+
  CTQ26572.1 103 PALYNALGIFLPLIAVNCAIFGGVSFMVQRDyNFPESIVYGFGSGIGWMLAIVAMAGIREKMKyanvpaglRGLGITFITTGLMALGFMSFSGV 196
                 ****************************7769***********************************************************986 PP

>> DUF2456  Protein of unknown function (DUF2456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.29   2.6e+03      26      43 ..      13      30 ..       4      60 .. 0.69
   2 ?    8.1   0.2    0.0003       2.7      17      68 ..      88     139 ..      75     149 .. 0.87
   3 ?    4.3   0.2    0.0047        42      44      66 ..     149     167 ..     139     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.29
     DUF2456 26 lvskairglllsviiflv 43
                +v +++ +++l++++fl+
  CTQ26572.1 13 FVENMALAFFLGMCTFLA 30
                455555566666665554 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0003
     DUF2456  17 silvnfiewlvskairglllsviiflvlWpvtigilagigkklgsdyyfnnt 68 
                   lv+++e+++ k + +l  ++ ifl l  v  +i +g+   ++ dy+f + 
  CTQ26572.1  88 AALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPES 139
                 56889999***********************************99**99775 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0047
     DUF2456  44 lWpvtigilagigkklgsdyyfn 66 
                  W ++i+ +agi +k++    + 
  CTQ26572.1 149 GWMLAIVAMAGIREKMK----YA 167
                 6***********99998....44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1698.61
//
Query:       CTQ26573.1  [L=407]
Description: Na(+)-translocating NADH-quinone reductase subunit F [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-17   64.1   0.0    2.6e-17   63.5   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    1.5e-10   40.9   0.8    2.5e-10   40.2   0.8    1.4  1  Fer2           2Fe-2S iron-sulfur cluster binding domain
    1.1e-09   38.5   0.0    5.5e-09   36.3   0.0    2.0  2  FAD_binding_6  Oxidoreductase FAD-binding domain
     0.0018   18.4   0.0      0.029   14.5   0.0    2.2  2  NAD_binding_6  Ferric reductase NAD binding domain
  ------ inclusion threshold ------
      0.023   15.0   0.0      0.063   13.6   0.0    1.8  1  PDZ            PDZ domain
        0.1   12.7   0.5       0.39   10.8   0.5    2.0  1  Fer2_4         2Fe-2S iron-sulfur cluster binding domain
       0.13   12.5   0.0       0.22   11.7   0.0    1.4  1  FAD_binding_9  Siderophore-interacting FAD-binding domain
       0.18   11.1   0.0       0.34   10.2   0.0    1.4  1  HPS3_C         Hermansky-Pudlak syndrome 3, C-terminal


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   1.1e-20   2.6e-17       1     107 [.     277     386 ..     277     388 .. 0.93

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 1.1e-20
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTT.EEEEEEEESSCTTTSSSEESSHHHHHHHHHHH..HSSTTE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpg.rlkvvavvsreeagweggkgrvqdalleells..lkkeet 93 
                    +i+gG G+aP+rs +   l++ + ++k+ + yG+r+ ++++y ee+e+la+ +p+ +++v   +  +e++w+g +g++++ l e++l      e++
     CTQ26573.1 277 FIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNfTFHVALSNPLPEDNWTGHTGFIHNVLYENYLRdhPAPEDC 372
                    79***********999999998999******************************77777777999********************998866899* PP

                    EEEEECSHHHHHHH CS
  NAD_binding_1  94 hvyvCGppgMikav 107
                     +y+CGpp M +av
     CTQ26573.1 373 EFYMCGPPVMNAAV 386
                    **********9887 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.8   1.1e-13   2.5e-10       7      78 .]      43     115 ..      36     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.1e-13
                 EEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSS.SSTTEEEEEESCE...CTTSSSSTHHHHHTTEEEEGGGSEES CS
        Fer2   7 evevevadgettlldaaeenggidipysCgggg.CgtClvevlegev...qsdetelegeeldegklrlaCqtivt 78 
                 + ++  ++g++ ll  + +n gi +  +Cgggg Cg C+v+v+eg     + + + +++++ ++++ rlaCq+ v+
  CTQ26573.1  43 DKQIRTPAGDK-LLNTLSSN-GIFVSSACGGGGsCGQCRVTVKEGGGdilPTELSHITKRD-AKAGCRLACQVAVK 115
                 55677788999.9999*999.***********************98876433344555554.445569****9985 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.2   2.7e+03      14      41 ..     146     172 ..     133     179 .. 0.65
   2 !   36.3   0.0   2.4e-12   5.5e-09      44      97 ..     204     266 ..     194     267 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
                    EEEEEEEESTTTS-----TT-EEEEEEC CS
  FAD_binding_6  14 trifrfklpsekqklglpvGqhvflrlk 41 
                    ++ +++++p e +++ +++G +++++++
     CTQ26573.1 146 IKELKLRIP-EGEVVPFRAGGYIQIECP 172
                    556666777.556688888888888766 PP

  == domain 2  score: 36.3 bits;  conditional E-value: 2.4e-12
                    TCCEEEEEE.BSSTTECCEEEEEEE--.........TT-HHHHHHHCS-TT-EEEEEEEE-SE CS
  FAD_binding_6  44 geaviRsYtpissenekGelellvkvy.........pgGkmsqaLdelkigdtleikGPlGkf 97 
                    +e  +R+Y++++ ++ekG + l v++          p G ms+++ +lk+gd+++i+GP+G+f
     CTQ26573.1 204 KEPTLRAYSMANYPEEKGIIMLNVRIAtpppkvpdaPPGIMSSYIWSLKPGDKVTISGPFGEF 266
                    45689********************************************************99 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.3e-05     0.029       4      48 ..     275     315 ..     273     345 .. 0.83
   2 ?    1.5   0.0      0.13     3e+02     136     151 ..     371     386 ..     355     390 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   4 vllvagGiGitpfisilkdllkkskkealktkkikliwvvresss 48 
                    +++++gG G++p+ s++ d lk+++    +t+ki++    r+  +
     CTQ26573.1 275 MVFIGGGAGMAPMRSHIFDQLKRLH----STRKISFWYGARSLRE 315
                    699*********************9....9999999988887765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.13
                    xxxxxxxxxxxxxxxx RF
  NAD_binding_6 136 svgvfvCGppklvkev 151
                       +++CGpp+++  v
     CTQ26573.1 371 DCEFYMCGPPVMNAAV 386
                    56789*******9877 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.8e-05     0.063      30      56 ..      13      41 ..       7      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.8e-05
                EEEECTT.SHHHHHT.SSTTEEEEEETTE CS
         PDZ 30 vsevlpg.gaaeadg.lkvGDkIlsvNgv 56
                +  vl g   a++++ +++GD+++++N++
  CTQ26573.1 13 IVLVLSGlILAARSKlVNAGDVVIEINNE 41
                566899999******************96 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   0.00017      0.39      10      78 ..      43     121 ..      34     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
      Fer2_4  10 GkevtvpeGdtvasAllangvdvprsckygrprgelcaggeCrnClVeve...................gepnvracstpvedGlkve 78 
                 +k+++ p+Gd++++ l  ng+ v   c           gg+C +C V+v+                   + +   ac++ v++++k+e
  CTQ26573.1  43 DKQIRTPAGDKLLNTLSSNGIFVSSACGG---------GGSCGQCRVTVKegggdilptelshitkrdaKAGCRLACQVAVKQNMKIE 121
                 5789999**************99999988.........89*********878888888888888887744555689999999999987 PP

>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.8e-05      0.22      49     119 ..     184     264 ..     159     266 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.8e-05
  FAD_binding_9  49 ppelteeg..lqeweelpederpvmRtYtvraldaeaeeldidfvlHgde........gpaarwAaqAqpGdelaivgPgg 119
                    p e+++++  ++ ++ ++e ++p++R Y+++++ +e++ + ++  +   +        g+ +++  + +pGd+++i gP g
     CTQ26573.1 184 PDEYRSDWdkFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPpkvpdappGIMSSYIWSLKPGDKVTISGPFG 264
                    555555551123355688999*****************77666666644455778888*********************77 PP

>> HPS3_C  Hermansky-Pudlak syndrome 3, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00015      0.34      62     113 ..      77     127 ..      72     152 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
      HPS3_C  62 ePrLLlkkkekavvPtelalql.ketqpgLlvaavvaLhenskvkleeadlff 113
                 + r+ +k+ ++ + Ptel++   ++++ g   a+ va+++n k++l e   +f
  CTQ26573.1  77 QCRVTVKEGGGDILPTELSHITkRDAKAGCRLACQVAVKQNMKIELPEE--IF 127
                 56788888999*******9765168999*****************9763..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3181.29
//
Query:       CTQ26574.1  [L=71]
Description: putative exported protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-22   76.6   1.6    1.1e-21   76.3   1.6    1.1  1  NqrM      (Na+)-NQR maturation NqrM
     0.0042   16.6   4.2     0.0068   16.0   4.2    1.3  1  PetM      PetM family of cytochrome b6f complex subunit 7
  ------ inclusion threshold ------
        4.7    7.2   5.5        8.9    6.4   1.2    2.1  2  DUF5345   Family of unknown function (DUF5345)


Domain annotation for each model (and alignments):
>> NqrM  (Na+)-NQR maturation NqrM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   1.6   1.8e-25   1.1e-21       1      42 [.      23      64 ..      23      65 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 1.8e-25
        NqrM  1 vivkrKpikGSCGGLaalgidkeCdCdepCderkkklakeqe 42
                ++vkrK+i+GSCGG++alg++k+CdC+epCd+rkk+la+e++
  CTQ26574.1 23 YLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQ 64
                9**************************************997 PP

>> PetM  PetM family of cytochrome b6f complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   4.2   1.1e-06    0.0068       4      23 ..       5      24 ..       4      26 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-06
        PetM  4 FnaAiLcfvLiLVGlAlGFl 23
                F a ++ f+L+++G++lG+l
  CTQ26574.1  5 FIATFVIFALVILGMSLGYL 24
                7899***************9 PP

>> DUF5345  Family of unknown function (DUF5345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.2    0.0015       8.9      42      61 ..       7      26 ..       6      42 .. 0.85
   2 ?    3.7   0.2      0.01        61       8      35 ..      42      69 ..      38      71 .] 0.81

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0015
     DUF5345 42 llFlliAllilsllllalvq 61
                + F++ Al+il++ l  lv+
  CTQ26574.1  7 ATFVIFALVILGMSLGYLVK 26
                78**********99877765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.01
     DUF5345  8 lDqlievetPsleeleqllaeekerkrk 35
                l++ +++++P  +  ++l +e+++++r+
  CTQ26574.1 42 LEKVCDCPEPCDARKKRLAREAQRQQRR 69
                6777888888888888899888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       897  (0.0500307); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 570.31
//
Query:       CTQ26575.1  [L=286]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-22   78.9   0.0    7.2e-22   78.4   0.0    1.3  1  GDPD      Glycerophosphoryl diester phosphodiesterase family
    0.00016   20.9   0.0    0.00034   19.7   0.0    1.5  2  FMN_dh    FMN-dependent dehydrogenase
  ------ inclusion threshold ------
      0.012   15.4   0.0        7.7    6.4   0.0    2.5  2  SH3_16    Bacterial dipeptidyl-peptidase Sh3 domain
       0.14   11.4   0.0       0.28   10.5   0.0    1.4  1  ThiG      Thiazole biosynthesis protein ThiG


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   1.6e-25   7.2e-22       1     258 [.      25     280 ..      25     281 .. 0.82

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 1.6e-25
                 TTTTTTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTST...ECCTTCCCCSCCCSSGCCB...BHH CS
        GDPD   1 HRGasgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrld...kiakenkaqlsenrvrlefpfptle 96 
                 HRG  g+ pEnTl++++ A+e+ a +i + vql++DgvpV++  ++l ++t++ g  +v++lt +el + d   k   + ++++++++     ++ptl+
  CTQ26575.1  25 HRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEG--KVSSLTAAELAKVDagwKW-GGDNRPWRGKQA----TIPTLQ 116
                 *******************************************************..**************88765.445699***998....8***** PP

                 HHHHHHHHCCSEEEEEEECCCCCCCHHHHHHTCHHHCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHTCT..CTEEEEEEHHHHHHC-E....... CS
        GDPD  97 evlkkpqnvglnieikipmlseakeeeelqivkeilksvdeilkkvlkkadkrkvifssfnpdilkllrekqp..klpllflteggteaead....... 186
                  vl+  ++  ++i+ik p  + + + + l  v ++  s+d+++   + +++++++i     p+i + +++ ++  +l  + l+++ ++a+++       
  CTQ26575.1 117 SVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVR---V-YSTEDRYI-AALPPAIPRFVTRSETrtRLANISLSHQCQPASQRdgeqwyg 210
                 ***9988888999998888887777777666666666666666...3.45555555.456666666666655544455566666666666557789999 PP

                 .EECHCCCCCCCTCCCCHHCCCHCCCEB.CHHHHHHHTT.-EEEEBSB-THSHHHHHHHHCCC-SEEEES-HH CS
        GDPD 187 ssleraakfakadallgevsavaeglgdpdlVkraksrg.lvvhvytvnnedeeemkrlleagvdgvitDfpd 258
                   l+r+++++ +  l   +s ++    d++  + ++s+    +  ++ n    e+ ++++e+g dgv++D+p+
  CTQ26575.1 211 LELKRKVEVVEKFTLGEGISPATLTW-DKEAMDCFRSQDkAHIIFFGINSA--EDYRTAIELGADGVMVDSPA 280
                 8899*****************99996.56677777766659999*******..9999*************996 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.41   1.8e+03     130     150 ..      41      61 ..      33     125 .. 0.57
   2 !   19.7   0.0   7.6e-08   0.00034     188     243 ..     217     276 ..     163     278 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.41
                 HHHHHCTESEEEEESSTSS-- CS
      FMN_dh 130 kraeaagykalvltvDtpvlg 150
                 k a + +++a+++tv    +g
  CTQ26575.1  41 KLALENNAEAIWVTVQLSRDG 61 
                 445555556666665444333 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 7.6e-08
                 THHHH..HHCCCHB-TC--HHH..HHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE CS
      FMN_dh 188 asaaa..efvgkqldpsltwdd..ikwlreqtklplvvKGvltaedakraveaGvdgivv 243
                 ++  +  ++ + ++ ++ltwd+  ++ +r+q k  ++  G+ +aed + a+e+G+dg++v
  CTQ26575.1 217 VEVVEkfTLGEGISPATLTWDKeaMDCFRSQDKAHIIFFGINSAEDYRTAIELGADGVMV 276
                 222223355555668899**954699********************************98 PP

>> SH3_16  Bacterial dipeptidyl-peptidase Sh3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0019       8.7      23      38 ..      44      61 ..      41      64 .. 0.82
   2 ?    6.4   0.0    0.0017       7.7      18      41 ..     144     169 ..     141     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0019
                EEEE.ET.EEEEEETTT- CS
      SH3_16 23 leea.dg.wawVqlceDg 38
                le++ +  w+ Vql +Dg
  CTQ26575.1 44 LENNaEAiWVTVQLSRDG 61
                56565999*********9 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0017
                 -EEEEEEEEET..EEEEEETTT--EE CS
      SH3_16  18 rhlrvleeadg..wawVqlceDgYvG 41 
                 r l+vl ++d    ++V++ eD Y++
  CTQ26575.1 144 RLLEVLKTTDSldRVRVYSTEDRYIA 169
                 67899998866335**********86 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   6.2e-05      0.28     179     206 ..     252     279 ..     226     284 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.2e-05
                 EEES---SHHHHHHHHHTT-SEEEESHH CS
        ThiG 179 ivDAGigspsdaaqamelGadavllnta 206
                 i+  Gi s++d  +a+elGad+v++++ 
  CTQ26575.1 252 IIFFGINSAEDYRTAIELGADGVMVDSP 279
                 4557*********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2163.54
//
Query:       CTQ26576.1  [L=351]
Description: DNA polymerase IV [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-48  164.8   0.0    1.8e-48  164.3   0.0    1.2  1  IMS              impB/mucB/samB family
    7.2e-10   39.6   0.0    1.4e-09   38.7   0.0    1.5  1  IMS_C            impB/mucB/samB family C-terminal domain
    3.6e-06   27.0   0.0    9.2e-06   25.7   0.0    1.7  1  IMS_HHH          IMS family HHH motif
     0.0045   16.8   0.0       0.01   15.6   0.0    1.6  1  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
      0.009   16.2   0.0      0.018   15.3   0.0    1.4  1  Cdd1             Pathogenicity locus
  ------ inclusion threshold ------
      0.026   14.8   0.0      0.042   14.1   0.0    1.4  1  DUF4332          Domain of unknown function (DUF4332)


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.3   0.0     6e-52   1.8e-48       1     150 []       7     154 ..       7     154 .. 0.98

  Alignments for each domain:
  == domain 1  score: 164.3 bits;  conditional E-value: 6e-52
                 EEETTHHHHHHHHHT.T-TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTHTT-EEEEEE-HHHHHHHHHHHHHHHHH-S..EEEEETTE CS
         IMS   1 iDmdaFyasverardpeLkgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklcpdlivvkvdlekyrraskkileilkrfispkvekasiDE 99 
                 +Dmd+F+a+ve++++p L++ P+++++ + +rg++ +++y+Ar++Gv+++m+ + a+klcp+l +++ ++++y++as+ i ei++r+ + ++e++s+DE
  CTQ26576.1   7 VDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRY-TSRIEPLSLDE 104
                 7**************************************************************************************.66********* PP

                 EEEE-HHHHHHHH-SHHHHHHHHHHHHHHHH---EEEEEESSHHHHHHHHH CS
         IMS 100 ayldltgleelaesegaalakelrkaikeelgltvsiGiasnkllAKlase 150
                 ayld+++ e+ ++s  + +a+e+r++i+ el+lt+s+G+a+ k+lAK+as+
  CTQ26576.1 105 AYLDVSDSEHCHGSA-TLIAQEIRQTIERELRLTASAGVAPVKFLAKIASD 154
                 **************6.*********************************96 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   4.6e-13   1.4e-09       5     109 ..     237     341 ..     233     348 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 4.6e-13
       IMS_C   5 rpepksissektfpepydesk....lkkelreLaeelarrLrdkg..lvartitlklrysdfhasrsatLpr.ptsdtreileaalkLlrrlidepglp 96 
                 ++++ks+++e+t++e++        +++++++L  el rrL + +  l+     +kl+++df+ + +    + p+ + ++++++a k +++     g++
  CTQ26576.1 237 DRQRKSVGVERTLAEDI---HewpeCEAIIENLYPELERRLAKVKpdLLIARQGIKLKFNDFQLTTQEH--VwPRLNKEDLIATAHKAWDERRG--GRG 328
                 689************44...33456999*************777777666667999999****777774..4388**************99988..*** PP

       IMS_C  97 irligvsasnlve 109
                 +rl+g++++ l++
  CTQ26576.1 329 VRLVGLHVTLLDP 341
                 *********9984 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   3.1e-09   9.2e-06       4      32 .]     169     197 ..     168     197 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.1e-09
     IMS_HHH   4 vkefLwplpitkipGiGgklgekLeklGi 32 
                 v+ef+  lp+ kipG+G++ ++kLe++G+
  CTQ26576.1 169 VAEFVRALPLAKIPGVGKVSAAKLENMGL 197
                 689************************96 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.4e-06      0.01       3      30 ..     178     205 ..     177     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.4e-06
  DNA_pol_lambd_f   3 FtkvyGVGpktAkkwyakGirtledlra 30 
                      + k+ GVG + A k+ ++G+rt  d+++
       CTQ26576.1 178 LAKIPGVGKVSAAKLENMGLRTCGDVQN 205
                      679***********************98 PP

>> Cdd1  Pathogenicity locus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     6e-06     0.018       8      45 ..     178     215 ..     173     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6e-06
        Cdd1   8 lqdiPniGkalaedlvelGirsveelkgedpeelyekl 45 
                 l +iP++Gk  a++l ++G+r++ +++++d + l +++
  CTQ26576.1 178 LAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRF 215
                 889************************99988877765 PP

>> DUF4332  Domain of unknown function (DUF4332)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.4e-05     0.042      12      97 ..     138     220 ..     127     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
     DUF4332  12 kkaGikttedLlelgktekgrkalaeklgisernvlklanlAdLarikgigeeyaeLLeaaGvdsvaeLaqrnpanLhqklkrlnr 97 
                 ++aG+  ++ L++++++ ++      +  i+ ++v +++ +  La+i+g+g+  a+ Le  G+++  ++ ++  a L ++ +++ r
  CTQ26576.1 138 ASAGVAPVKFLAKIASDMNKP---NGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGR 220
                 677888888888886665555...78888999****************************************99999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2785.37
//
Query:       CTQ26577.1  [L=150]
Description: putative acyltransferase with acyl-CoA N-acyltransferase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-17   63.9   0.0    1.6e-17   63.6   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    5.7e-08   33.1   0.0      8e-08   32.6   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    2.9e-05   24.3   0.0    4.4e-05   23.7   0.0    1.4  1  Acetyltransf_1   Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   2.7e-21   1.6e-17       3     126 ..      28     144 ..      26     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 2.7e-21
  Acetyltransf_10   3 adyseegietfkefispealrerieegealllvaeeggkivGvielrdgshisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspy 96 
                       dy++ +i+++  ++++ ++r+++   + + lva ++ ++vG+i+   + hi llfV+p+  +qGig aL+ea++ ++  +     ltv+as +
       CTQ26577.1  28 RDYTPGQIAAW-AQVDETRWRQKL--ADSIGLVAVVNSQPVGFITAIGT-HIDLLFVSPDRARQGIGGALIEALCVQYPAQ----ILTVDASIT 113
                      68999999999.57899******9..777789999999******76666.***************************9555....99******* PP

  Acetyltransf_10  97 avpfYeklGFkav.geeqeenGirfvpMeke 126
                      a+p++  +GFk+v ++   ++G  f+++++e
       CTQ26577.1 114 AKPCFTAHGFKVVaEQRVAAHGEWFINYRME 144
                      *************777777788888888775 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.3e-11     8e-08       6      75 ..      56     124 ..      38     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.3e-11
                     EEEEETTEEEEEEEEEEESTCTEEEEE-GGGTTSSHHHHHHHHTT....SEEEEEEEEETHH.HHHHHHHHTTEE CS
  Acetyltransf_7   6 fVaeddgkivGfialslldaeitrlaVdpeyrgkGiGraLleaae....kgiileqlelnae.kaikfYeklGFe 75 
                     +Va  + ++vGfi +  +  +i  l+V+p+  ++GiG aL+ea +     +i    l+++a+ +a + +  +GF+
      CTQ26577.1  56 LVAVVNSQPVGFITAIGT--HIDLLFVSPDRARQGIGGALIEALCvqypAQI----LTVDASiTAKPCFTAHGFK 124
                     5788899****9987776..8999******************8322122111....12333358899******98 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   7.3e-09   4.4e-05       4      88 ..      22     100 ..      19     123 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 7.3e-09
                     HHHHHHHHTHHHHHHHHHHH..HHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHH CS
  Acetyltransf_1   4 lvellvesffppnedaseee..feesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeer 88 
                     ++e + ++++p    a+  +   +++  l ++ +lva  + +++Gfi  + i        +i+ l+Vsp++ ++G+G aL+eal  +
      CTQ26577.1  22 VRETASRDYTPGQIAAWAQVdeTRWRQKLADSIGLVAVVNSQPVGFI--TAIGT------HIDLLFVSPDRARQGIGGALIEALCVQ 100
                     55555555553333333333323344445777999999*********..44544......6*********************99755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1144.36
//
Query:       CTQ26578.1  [L=485]
Description: aminoacyl-histidine dipeptidase (peptidase D) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-20   72.1   0.0    8.9e-20   71.3   0.0    1.4  1  Peptidase_M20  Peptidase family M20/M25/M40
    6.1e-10   39.0   0.0    1.3e-08   34.7   0.0    2.3  2  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.0     1e-23   8.9e-20       1     206 [.      72     480 ..      72     481 .. 0.88

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 1e-23
                    EEEEES-BSS..TTCG.GGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHHTTTCES CS
                    xxxxxxxxxx..xxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVp..eeet.dgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegleerekvd 92 
                    +l++HlD+Vp  +++t  ++ + p ++ ++   + +rG++ +    ++++ al+ l+d+ +   g++++l++  EE+g++Ga  l ++++   ++d
     CTQ26578.1  72 ALQAHLDMVPqkNNDTvHDFVKdPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVA-HGPLEVLLTMTEEAGMDGAFGLQANWL---QAD 163
                    689*******8766665666679*****9988***************************987.59***********88888877666443...233 PP

                    EEEEEEEESSSBTCHSTETEEEE......................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxxx......................................................................... RF
  Peptidase_M20  93 avfelhieepgileagklaigvv......................................................................... 115
                         +i+ ++  e+g++  g                                                                           
     CTQ26578.1 164 I----LIN-TDSEEEGEIYMGCAggidftsnlaltreaipagfqsfkvtlkglkgghsggdihlglgnankllsrflaghadeldlrlvdfnggtl 254
                    3....233.2222223322222255556666666666777777788888999999999999999999***************************** PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Peptidase_M20 116 ................................................................................................ 115
                                                                                                                    
     CTQ26578.1 255 rnaipreayatvavaadkadalkalvntyqallkneleakeknlvvlveavdndkaalaqasrdtfirllnatpngvirnsdvakgvvetslnvgv 350
                    ************************************************************************************************ PP

                    ....................................EEEEEEEEEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHHTTT.EEE. CS
                    ....................................xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx. RF
  Peptidase_M20 116 ....................................kvevelleggapvtln.dsplvkalaeaaeelfgekvelivsgpggtdarffagi.ptv. 172
                                                         ++ e  ++++ +  + +sp++ +++e++++lf+++++  + + +g +++ f++  p + 
     CTQ26578.1 351 vtmtddnvqihclirslidsgkdyvvsmldslgklaGAKTEAKGAYPGWQPDaNSPVMHLVRETYQRLFNKTPNIQIIH-AGLECGLFKKPyPEMd 445
                    ***********************************76888888**************************98899999**.********55569885 PP

                    EE.EESSGGCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 173 mi.fgpgsglaHspnEyvdledlekgikvlarlle 206
                    m+ +gp   + Hsp+E+v++e++ ++  +l++ll+
     CTQ26578.1 446 MVsIGPTITGPHSPDEQVHIESVGQYWTLLTELLK 480
                    5579999899*************999999999986 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.5e-12   1.3e-08       8     107 ..     203     293 ..     199     295 .. 0.86
   2 ?    1.7   0.0     0.027   2.4e+02      16      66 ..     390     431 ..     383     439 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.5e-12
                 EEEEEEE-.B-EEGG.-TTTTB.-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTS CS
   M20_dimer   8 ggkitvkg.kagHsg.apgaga.NAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeilek 103
                 ++k+t kg k+gHsg   + g  NA+++l+r+la   de              l +  ++gG+ +n+ip+ea+a++ +   + + ++++ ++ +++l++
  CTQ26578.1 203 SFKVTLKGlKGGHSGgDIHLGLgNANKLLSRFLAGHADE------------LDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKN 289
                 666666654566777766666425***************............9**********************************************9 PP

                 CCST CS
   M20_dimer 104 eape 107
                 e+++
  CTQ26578.1 290 ELEA 293
                 9876 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.027
                 B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE- CS
   M20_dimer  16 kagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegG 66 
                 + + +++pg  ++A+   ++l+ e  +  ++          t+n+ +i++G
  CTQ26578.1 390 TEAKGAYPGWQPDANSPVMHLVRETYQRLFN---------KTPNIQIIHAG 431
                 566777999999***************9887.........88999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3747.26
//
Query:       CTQ26579.1  [L=152]
Description: guanine-hypoxanthine phosphoribosyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-15   55.6   0.0    5.3e-15   55.3   0.0    1.1  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
       0.26   11.3   0.0       0.34   10.9   0.0    1.1  1  DUF1357       Protein of unknown function (DUF1357)


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   5.9e-19   5.3e-15       5     157 ..      12     144 ..       8     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 5.9e-19
                   TTT---EEEEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHSTT-.EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSS CS
  Pribosyltran   5 llenpaildavarlaaeileeyngkpdvvvgiargGvpfakiladeLevp.layvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtG 100
                   l+       ++++la+++l    +++  ++++ rgG++++  la+eL+++ ++ v +++y++d++ e + ++     + ++ +g+  +++DD++dtG
    CTQ26579.1  12 LQI------HARKLASRLLPV--EQWKGIIAVSRGGLVPGALLARELGIRhVDTVCISSYDHDNQRELK-VL-----KRAEGDGEGFIVIDDLVDTG 94 
                   444......666777777766..88999*********************95667888888888888886.44.....899***************** PP

                   HHHHHHHHHHHCC-BSEEEEEEEEE-HHHHHHHHHH-TTS......EEEEEEE-SEE- CS
  Pribosyltran 101 gTllaalelLkekgpeevriavlvdkpateeevdknakrvfsls.pdnfvavvgfeld 157
                   gT      +++e +p+  +++++++kpa++  vd +++    +   +++++++++++ 
    CTQ26579.1  95 GTAV----AIREMYPK-AHFVTIFAKPAGRPLVDDYVV---DIPqDTWIEQPWDMGVV 144
                   **99....99*****6.****************77555...455578******99876 PP

>> DUF1357  Protein of unknown function (DUF1357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.8e-05      0.34     111     154 ..       9      52 ..       2      69 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.8e-05
     DUF1357 111 kdimqaqrrelvrkfvpieqikaiakvsdishidgeileqlvsl 154
                  d++q   r+l  +++p+eq k i  vs    + g +l + + +
  CTQ26579.1   9 WDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGI 52 
                 599*************************9999999988776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1185.17
//
Query:       CTQ26580.1  [L=414]
Description: hydrolase, binds to enzyme IIA(Glc) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.5e-201  666.9   0.0   1.1e-200  666.7   0.0    1.0  1  DUF1100   Alpha/beta hydrolase of unknown function (DUF1100)
     0.0058   15.3   0.0       0.24   10.0   0.0    2.3  3  AXE1      Acetyl xylan esterase (AXE1)
  ------ inclusion threshold ------
       0.15   11.6   0.0       0.42   10.1   0.0    1.7  2  DLH       Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> DUF1100  Alpha/beta hydrolase of unknown function (DUF1100)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  666.7   0.0  1.8e-204  1.1e-200       1     409 [.       1     412 [.       1     414 [] 0.99

  Alignments for each domain:
  == domain 1  score: 666.7 bits;  conditional E-value: 1.8e-204
     DUF1100   1 avsknlsetlfkkkkkaketsalvrrlptsk..elldaldektakawyrnlrrlqwiwrGvdpleieevlariasskaertddelldtvvGyrsGnwiy 97 
                 ++++nlsetlfk+++k++ets+lvrr++++k   +++al++++  +wyr ++rl+wiwrGv p ei +v+ari++s+aertd el+dtv+Gyr+Gnwi+
  CTQ26580.1   1 MSQANLSETLFKPRFKHPETSTLVRRFSAGKpqAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIF 99 
                 689**************************99879***************************************************************** PP

     DUF1100  98 ewaklgmlhqkkaaeekde.eaaeellaaallysiagyphlkgdnlalqaqvlanrayeeaakklkyvlkqlelpvek.kkitgflhlpktdkplpvvl 194
                 ewak +m++q+ka +e d+  +++++l+a++lysia+yph+kgd+la+qaq+lanrayeeaa++l+  l++le+++++ ++itgflh+pk+++p+p+vl
  CTQ26580.1 100 EWAKEAMQWQQKAGQEADPlLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGgSPITGFLHMPKGEGPFPTVL 198
                 *******************99********************************************************9899****************** PP

     DUF1100 195 vsaGldslqtdmyrlfrdylakkdiamltidlpsvGasskwkltedssllhqavlkeladvpyvdhtrvgliGfrfGanvavrlaflesekvkavvalG 293
                 +++Gldslqtd+y+l+++y+++ +iamltid+ps+G+sskw l +d+sllhq+ l++l +vp++dhtrv+++GfrfGan+avrl++le++++kav++lG
  CTQ26580.1 199 MCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLG 297
                 *************************************************************************************************** PP

     DUF1100 294 avvhdlltsskklqkvpkmyldvlasrlGksdvdieslsgelnayslkvqGllsgrrtktpilalslegdpvspkednklvalfsadGklkkissktit 392
                 +vvh ll ++ ++ +vp+myldvlasrlG++d+++e+l++eln+yslk+qGll grr++tp+l++++++dp+sp+e+++l++++sadGkl++i++++++
  CTQ26580.1 298 PVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLL-GRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVY 395
                 *****************************************************.********************************************* PP

     DUF1100 393 kgyeksldlaiewlede 409
                 ++++++l +++ w++++
  CTQ26580.1 396 RNFDHALRQIARWINHR 412
                 **************986 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0      0.76   4.6e+03      69      98 ..      69      98 ..      67     110 .. 0.67
   2 !    2.8   0.0    0.0065        39      57     115 ..     169     228 ..     142     246 .. 0.72
   3 !   10.0   0.0     4e-05      0.24     160     206 ..     251     298 ..     240     301 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.76
                EEEEEEEES.SSSSEEEEEE.EE-TT--GGG CS
        AXE1 69 ikaklvlPkekeeklPavve.fhGYegsrge 98
                ++a++v+ + +e++ P ++   +GY g+++ 
  CTQ26580.1 69 VQARIVMSE-AERTDPELFDtVIGYRGGNWI 98
                677888777.778888877526799888764 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0065
                 EEEEEEEGGGEEEEEEEEEES.SSSSEEEEEEEE-TT--GGGHHHHHH..HHHTT-EEEEE CS
        AXE1  57 ydltfegvrgarikaklvlPkekeeklPavvefhGYegsrgeihdlln..yaaaGyavvvm 115
                  +l f+  +g++i++ l +Pk  e++ P+v+   G  + + +  +l +  ++  G+a++++
  CTQ26580.1 169 RELEFTIPGGSPITGFLHMPK-GEGPFPTVLMCGGLDSLQTDYYNLYEnyFSPLGIAMLTI 228
                 57899999*************.9********999988877776665422144556665555 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 4e-05
                 HHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH-S.S-SEEEEES- CS
        AXE1 160 rlveivaslpevDeeRvavlGasqGGalalavaalek.rikavvadyP 206
                 ++++ + ++p++D++Rva++G   G  +a+  + le+ r+kav++  P
  CTQ26580.1 251 HALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPqRLKAVACLGP 298
                 5677889****************************9735788877655 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   7.1e-05      0.42      83     126 ..     250     294 ..     229     314 .. 0.83
   2 ?   -3.7   0.0       1.2   7.2e+03     145     180 ..     356     390 ..     352     402 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.1e-05
         DLH  83 kaavaylksvpevstkkvgvvGfCmGGalalllaaev.pevdaav 126
                 + a+++l++vp  ++ +v++ Gf +G+++a+ l   + ++++a++
  CTQ26580.1 250 QHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEpQRLKAVA 294
                 4699****************************9988867777776 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.2
         DLH 145 apilalfgeeDefipadevekleealkaanvdlelk 180
                 +p+l  f + D+f p +e   +++  +a ++ le+ 
  CTQ26580.1 356 TPMLSGFWKDDPFSPEEESRLITS-SSADGKLLEIP 390
                 677778888899998887555554.44777777774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3069.89
//
Query:       CTQ26581.1  [L=132]
Description: DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-52  175.1   0.2    5.2e-52  175.0   0.2    1.0  1  Crl       Sigma factor-binding transcriptional regulator Crl


Domain annotation for each model (and alignments):
>> Crl  Sigma factor-binding transcriptional regulator Crl
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.0   0.2   2.9e-56   5.2e-52       3     119 ..       6     122 ..       4     123 .. 0.98

  Alignments for each domain:
  == domain 1  score: 175.0 bits;  conditional E-value: 2.9e-56
                 XS-HHHHHHHHHCT-TTB-GGG-BTTEEEEEEEEEES-TTS-GGG--EEEEEEEEEEETTEEEEEEEEEEE-TTS-EESEEE--HHHHHHHHHHHHHHH CS
         Crl   3 sptksrllkklkalGPYlreeqceedrfffDCLavCvnakkapekrefwGWWleleaeeeefeyeyqlGlydkegeWkaekikkkeveeklektleefh 101
                  + ks+l+kk++alGPY+reeqc+++rfffDCLavCvn+k+apekrefwGWW+e+ea+e++f+y+yq+Gl++keg+W+a  i + ev+++lektl+efh
  CTQ26581.1   6 GHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIGDPEVSDRLEKTLREFH 104
                 6789*********************************************************************************************** PP

                 HHHHHHHHHTT-EEEE-G CS
         Crl 102 kklealleelelelelae 119
                 ++  all++++l+le+a+
  CTQ26581.1 105 ERAAALLTTFNLKLEPAD 122
                 ***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1065.26
//
Query:       CTQ26582.1  [L=104]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-08   33.2   1.0    6.8e-08   32.4   1.0    1.4  1  DUF1471   Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   1.0   3.8e-12   6.8e-08       8      54 ..      58     102 ..      55     104 .] 0.93

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 3.8e-12
                 EECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEE CS
     DUF1471   8 svsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAel 54 
                 sv+  +++++++e+ ++kkA+e  A  Y Itsa+   g++++ +A+l
  CTQ26582.1  58 SVTATSNTLDSAEAMIAKKAKELNATDYKITSAHM--GNKVTMSAVL 102
                 56666******************************..*****99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1411  (0.0786993); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 819.58
//
Query:       CTQ26583.1  [L=138]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-27   96.9   0.0    1.3e-27   96.8   0.0    1.0  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
    0.00042   20.5   0.0    0.00045   20.4   0.0    1.3  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
     0.0065   16.5   0.0      0.015   15.4   0.0    1.6  2  DCX              Doublecortin


Domain annotation for each model (and alignments):
>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   2.2e-31   1.3e-27       1     141 [.       1     135 [.       1     137 [. 0.91

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 2.2e-31
                      EEEEEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSESTSSSTTTEEEEECCCSSEEEEEEEEEETTTTEEEEEEE..SSS-TSEEEEEE CS
  Polyketide_cyc2   1 mvkvtvsvviaappekVwalvsdfenwprWhpevarveleggggpargvegtvrvggrgtvreelvevdpegrllsyriv.kpvpvanyvatwt 93 
                      m+++t s++i a++++Vw l + f+++p W p+++++ ++++gg+  ++   ++  g gtv e+l+++d ++r++sy i  +p+pv +y +t++
       CTQ26583.1   1 MATTTISIEISASVDQVWQLMGGFDSLPDWLPFIPKS-MVSEGGR--VR-TLTTSDG-GTVIERLEAFDNRQRSYSYSIIqAPFPVVDYLSTIA 89 
                      789999*******************************.7764777..44.4444777.78*********99********88************* PP

                      EEECCET..EEEEEEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc2  94 vtpdggg..trvtwtgefdagplggpfekpaaakavkgdleagLerLkar 141
                      v ++++   trv+w+g f +     +++++ a++++ g++++gL++Lk +
       CTQ26583.1  90 VVATADSniTRVEWSGSFTP----VNVSDADAEALFSGIYRDGLQALKNN 135
                      *****9889**********8....99999*******************86 PP

>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   7.5e-08   0.00045       1      36 [.      10      45 ..      10     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 7.5e-08
                    ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE CS
  Polyketide_cyc  1 vpapadqvyalvadvesypeflphcssvevleeaes 36
                    ++a++dqv++l   ++s+p++lp++ ++ v e  + 
      CTQ26583.1 10 ISASVDQVWQLMGGFDSLPDWLPFIPKSMVSEGGRV 45
                    78************************8877776663 PP

>> DCX  Doublecortin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.5e-06     0.015      24      51 ..      41      70 ..      24      70 .. 0.81
   2 ?   -3.4   0.0       1.8   1.1e+04      22      32 ..      76      87 ..      74      88 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.5e-06
         DCX 24 pfg.VrklytldGrkvvssldeLed.gesY 51
                  g Vr+l t+dG++v+  l+++ + + sY
  CTQ26583.1 41 EGGrVRTLTTSDGGTVIERLEAFDNrQRSY 70
                4569*******************7635565 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.8
         DCX 22 klpfg.Vrklyt 32
                ++pf+ V +l t
  CTQ26583.1 76 QAPFPvVDYLST 87
                678998888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1106.00
//
Query:       CTQ26584.1  [L=265]
Description: Uncharacterized oxidoreductase YvaG [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-41  140.0   1.6      3e-40  138.2   1.6    1.7  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    9.6e-36  123.1   0.7    1.3e-35  122.7   0.7    1.2  1  adh_short     short chain dehydrogenase
      2e-06   27.8   0.5    3.9e-06   26.9   0.2    1.6  2  KR            KR domain
    2.1e-05   24.5   1.3      0.014   15.2   0.3    2.2  2  3HCDH_N       3-hydroxyacyl-CoA dehydrogenase, NAD binding do
  ------ inclusion threshold ------
       0.12   11.8   0.4       0.28   10.6   0.1    1.7  2  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.2   1.6   8.4e-44     3e-40       1     233 [.      14     259 ..      14     260 .. 0.88

  Alignments for each domain:
  == domain 1  score: 138.2 bits;  conditional E-value: 8.4e-44
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93 
                   G  sgIG +iAk la +Ga+vv++ +++++ + +++++ +e++ + +  + +D + ee v al ++      + D++vnn gi ++  ++f +++++
    CTQ26584.1  14 GSTSGIGLGIAKGLAWAGATVVIVGRQQRGvDTAIAAINAEHPDAqLrgVVADLSTEEGVSALLAA----EPHADVVVNNLGIFND--KDFFSVPDS 104
                   5679**************************99*********9966467899999999999999876....4567************..********* PP

                   HHHHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT.... CS
  adh_short_C2  94 efdraldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg.... 184
                   e+ +  +vn+ s ++l+++ ++ ++ +g g+i+ +ss ++  + ++   yg++K a  a+++ lA+ l+  g++vNa+ pgp+ T+  +++      
    CTQ26584.1 105 EWMHFYNVNVLSGVRLSRHYAQgMIDNGwGRIIFVSSESGVAIPADMINYGVTKSANLAVSHGLAKRLAGTGVTVNAILPGPTFTEGLQEMLAeaat 201
                   **********************8888889*********8866666666***********************************99753332221222 PP

                   .........HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 185 .........fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                            +de+ + ++ ++ ++r+++++eva++a++Las+++s++tG+ l vDgG+
    CTQ26584.1 202 qsgrspreqADEFVKTARPSSIIQRAADVDEVANLAVYLASPLSSATTGAALRVDGGV 259
                   3445554446678888899999***********************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.7   0.7   3.5e-39   1.3e-35       1     190 [.       8     195 ..       8     200 .. 0.97

  Alignments for each domain:
  == domain 1  score: 122.7 bits;  conditional E-value: 3.5e-39
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsels 97 
                 kv++v G +sGIG+ iak la +Ga+vv+v+r+++ + ++++ +++e   a++  + +D++++e v+al+++      + dv+vnN Gi ++++f ++ 
  CTQ26584.1   8 KVAVVSGSTSGIGLGIAKGLAWAGATVVIVGRQQRGVDTAIAAINAEhpDAQLRGVVADLSTEEGVSALLAAE----PHADVVVNNLGIFNDKDFFSVP 102
                 89*********************************************99999*********999999999887....899******************* PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short  98 eeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 ++ew   ++vN+ + + l+r+ ++ m+++ +GrI++vsS  g    a ++ Y+ +K a  + ++ lak la tg++vna+ PG++ T+  +e 
  CTQ26584.1 103 DSEWMHFYNVNVLSGVRLSRHYAQGMIDNGWGRIIFVSSESGVAIPADMINYGVTKSANLAVSHGLAKRLAGTGVTVNAILPGPTFTEGLQEM 195
                 **************************************************************************************9988775 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.2   1.1e-09   3.9e-06       4     155 ..      11     160 ..       9     187 .. 0.81
   2 ?   -2.0   0.0       0.8   2.9e+03      30      67 ..     202     235 ..     168     243 .. 0.63

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.1e-09
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT..T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal..gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 ++ G + g+Gl +a+ la  ga+ +v+++R+++  +   + ia+++a   +a+ + v aD+s ++ v+all++          v++  g+++dk + ++
  CTQ26584.1  11 VVSGSTSGIGLGIAKGLAWAGAT-VVIVGRQQRGVD---TAIAAINAEhpDAQLRGVVADLSTEEGVSALLAAEP----HADVVVNNLGIFNDKDFFSV 101
                 799******************85.7899***44333...3455555443499****************9998765....56689*************** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTTS--SE....EEEEEEHHHHH--TT-HHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelledesldf....fvlfSSiagllgsagqanYaaaNaf 155
                  ++++ + ++  v     L +  ++  +d     ++++SS +g+   a   nY  + + 
  CTQ26584.1 102 PDSEWMHFYNVNVLSGVRLSRHYAQGMIDNgwgrIIFVSSESGVAIPADMINYGVTKSA 160
                 *********************999977764334499*****************876543 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.8
                 EE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHH CS
          KR  30 llsRsaaadedskaliaelealgaevevvaaDvsdkda 67 
                   +Rs  ++e++++++++  a+  ++  +aaDv + ++
  CTQ26584.1 202 QSGRS--PREQADEFVKT--ARPSSIIQRAADVDEVAN 235
                 44566..55666666663..334566666666665555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.3     4e-06     0.014      10      68 ..      19      77 ..       8      91 .. 0.79
   2 !    8.1   0.0   0.00061       2.2      11      82 ..     165     233 ..     163     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4e-06
                CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEE CS
     3HCDH_N 10 mGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalaris 68
                +G gia+ +a ag +Vv+v ++++ +++a ++i+++   ++ +g + + ++e+ ++ + 
  CTQ26584.1 19 IGLGIAKGLAWAGATVVIVGRQQRGVDTAIAAINAEHPDAQLRGVVADLSTEEGVSALL 77
                89*********************************999999999888777777666554 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00061
                 HHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEE CS
     3HCDH_N  11 GagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlv 82 
                  +g+a+ +a +g++V+ +   + + e  +e++++    + ++g+  +e++++ +++ ++++ +++a+d+d v
  CTQ26584.1 165 SHGLAKRLAGTGVTVNAILPGPTFTEGLQEMLAE---AATQSGRSPREQADEFVKTARPSSIIQRAADVDEV 233
                 5899*************************99997...5667899999********************99977 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   7.7e-05      0.28       2     115 ..      11     141 ..      10     173 .. 0.78
   2 ?   -1.3   0.0      0.34   1.2e+03      57      78 ..     212     234 ..     195     253 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.7e-05
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHHH.T-SEEEE--S---HHHHHHSHHH....H CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfkee.qpdavihlAavggvaassedpad....f 87 
                 +V G t  iG  ++k l+ +g +v+ + r++++  ta  +          + v +dl  ++ + +l++ e ++d+v++  ++ + ++ ++ p      f
  CTQ26584.1  11 VVSGSTSGIGLGIAKGLAWAGATVVIVGRQQRGVDTAIAAINaehpdaqlRGVVADLSTEEGVSALLAAEpHADVVVNNLGIFNDKDFFSVPDSewmhF 109
                 799***************************9999888766558999***********************99******9988888887777776511114 PP

                 HHHHTHHHHHHHHHHH....HHTCTEEEEEEE CS
   Epimerase  88 ieknlqgtlnlleaar....kagvkrllflsS 115
                 ++ n+   ++l         ++g  r++f+sS
  CTQ26584.1 110 YNVNVLSGVRLSRHYAqgmiDNGWGRIIFVSS 141
                 44555555555444333444445557777777 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.34
                 HHHHHHHT-SEEEE--S.---HH CS
   Epimerase  57 erlfkeeqpdavihlAa.vggva 78 
                 ++++k+ +p  +i  Aa v  va
  CTQ26584.1 212 DEFVKTARPSSIIQRAAdVDEVA 234
                 55555555555555555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2009.78
//
Query:       CTQ26585.1  [L=336]
Description: putative Aldo/keto reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-48  165.7   0.0    1.6e-48  165.4   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.4   0.0     9e-53   1.6e-48       1     291 [.      10     323 ..      10     325 .. 0.94

  Alignments for each domain:
  == domain 1  score: 165.4 bits;  conditional E-value: 9e-53
                   .EEEE-SSS-ST..TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE........................-- CS
  Aldo_ket_red   1 elglGtwqlgsk.eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv........................dl 72 
                   ++glG++ lg+  ++i+++ea +++ +a + G+++fDtA++Yg g se+ +Geal++   +r+++++++Kv                        ++
    CTQ26585.1  10 NIGLGGAPLGNMfRNIPEDEAHATVAAAWDLGVRYFDTAPLYGSGLSEIRMGEALSQ--YPRDQFVLSSKVgrimldemedpatrdfgekgglfeYG 104
                   69*******************************************************..************************************99 PP

                   SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-...........HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH..HHTTT--E CS
  Aldo_ket_red  73 rdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslp..........sieevldaleelvkeGkiraiGvSnfsveqleka..kkkkkvki 157
                    + +i  ++s++   +s+e+slkrL+td++D++ +H+p  + +           ++ +++al+ l++eG i+a+G+    ve  e    + + k ++
    CTQ26585.1 105 LKNKILNDYSADATLRSIEDSLKRLKTDHLDIVWIHDPAQDFYgdswleqfniARTGAFRALTRLREEGVIKAWGLGVNRVEPCELTlaLDEPKPDA 201
                   9********************************************99999999999999******************77777666557799****** PP

                   EEEE-B-BTT.-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTT CS
  Aldo_ket_red 158 vavqveynll.releeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryals 253
                     +  +y+ll  +++ + l + + +++v++++ +p ++G l g ++ e +k +                 +++ +++++a+ h v++ ++al++al+
    CTQ26585.1 202 FLLAGRYSLLdHKRALQRLMPEALEQNVDIVVGGPYSSGVLAGGEHFEYQKASA-------------AIHQQVAHIKAIAARHQVDVKAAALQFALA 285
                   **********8777777778888889********************99988743.............44599************************* PP

                   STT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHH CS
  Aldo_ket_red 254 qpavgivipgasnieqlednldalelklseeevaelde 291
                   +pav  vipg+s++ ++ + l+al+ ++++  ++e+++
    CTQ26585.1 286 HPAVAAVIPGSSRPGRMAEDLAALKATIPAAFWEEMRS 323
                   *****************************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2495.97
//
Query:       CTQ26586.1  [L=297]
Description: putative HTH-type transcriptional regulator alsR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-38  131.4   3.1    4.8e-38  130.6   3.1    1.3  1  LysR_substrate  LysR substrate binding domain
    2.5e-22   78.6   2.0      4e-22   77.9   1.1    1.9  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.018   14.5   0.0      0.028   13.9   0.0    1.2  1  ParA            NUBPL iron-transfer P-loop NTPase
      0.025   14.1   0.1      0.067   12.8   0.1    1.7  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.033   14.0   0.1       0.09   12.6   0.1    1.7  1  HTH_30          PucR C-terminal helix-turn-helix domain
       0.11   13.1   0.1       0.21   12.2   0.1    1.4  1  Mga             Mga helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   3.1   1.6e-41   4.8e-38       3     205 ..      89     293 ..      87     296 .. 0.94

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 1.6e-41
                     TSCEEEEEEEECCCH.HHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGGSS CS
  LysR_substrate   3 glrgrLrigapptla.ryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLarge 94 
                     g+ g L+ig ++ +  + +l  +l+ +r   P+v++ l + ++++++++l++++lD+ ++  pp   +++le++++++++++l+++++hpLa+ e
      CTQ26586.1  89 GEDGGLCIGYIENAMhSGVLSTALRTLRTSRPDVHIALYSQPPATQIEGLRQRSLDFSLVDMPPsaGEQDLEYTQVLDDRMLLALPQNHPLAAAE 183
                     677889999998777799***************************************************************************** PP

                     SECGGGGCTSEEEEE..STTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEE CS
  LysR_substrate  95 pvsledLadeplill..eegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelyl 185
                      +++++Lad+++i +  ++      rd + +a+ +ag++p+++le+ +  ++l+lvaaGlG+al+ +s+ ++  a  ++v +++p   ++ +l++
      CTQ26586.1 184 NLQPAQLADQQWIAVihND--DahSRDDFVAACVRAGFNPDIRLEAGEPLTALGLVAAGLGVALIQHSLRHN--APEGVVLREIPWMSYSTQLWA 274
                     ***************5344..446*********************************************877..7777***************** PP

                     EEETTCCCHHHHHHHHHHHH CS
  LysR_substrate 186 vyrkgrelspavrafidflr 205
                     +++k   ++p+v +f++ lr
      CTQ26586.1 275 IWHKAN-QRPLVMHFREVLR 293
                     *****9.**********998 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   1.1   1.4e-25     4e-22       1      60 []       4      63 ..       4      63 .. 0.98
   2 ?   -3.7   0.0       4.1   1.2e+04      30      38 ..     108     116 ..     102     123 .. 0.58

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 1.4e-25
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lrql++fv vaee+++ rAAe+L++sq+ +srqi++LEe+lg  LfeR+++++rLT+ G+
  CTQ26586.1  4 LRQLKYFVVVAEEEHVGRAAERLHISQSPLSRQIAQLEERLGLMLFERNQQRIRLTADGQ 63
                79**********************************************999*******97 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.1
                 HHHHHHHHH CS
       HTH_1  30 vsrqikrLE 38 
                 +s ++++L+
  CTQ26586.1 108 LSTALRTLR 116
                 445555554 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.4e-06     0.028     110     173 ..     141     201 ..     134     209 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.4e-06
        ParA 110 gelDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveN 173
                  +lD+ ++D+PP  g   l  +q l+  + ++ + pq+  la ++ +++ ++ ++++ ++v+ N
  CTQ26586.1 141 RSLDFSLVDMPPSAGEQDLEYTQVLD--DRMLLALPQNHPLAAAE-NLQPAQLADQQWIAVIHN 201
                 579*********************95..67788888887776554.455555555566666655 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.3e-05     0.067      24      43 ..      23      42 ..      21      43 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.3e-05
      HTH_24 24 AerlglSpstvnrrlkrLee 43
                Aerl++S+s+++r++ +Lee
  CTQ26586.1 23 AERLHISQSPLSRQIAQLEE 42
                9******************8 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1     3e-05      0.09      12      53 ..      16      58 ..      11      61 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3e-05
                TT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TT.SHHHHHHH CS
      HTH_30 12 ggnisatAkaLhvHrnTlryRLrrieellgldld.dpddrlaL 53
                   + ++A++Lh++   l+  + ++ee lgl l  + ++r +L
  CTQ26586.1 16 EEHVGRAAERLHISQSPLSRQIAQLEERLGLMLFeRNQQRIRL 58
                567899************************9854156666665 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   6.9e-05      0.21      21      59 ..       7      45 ..       2      59 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.9e-05
                HHHHHHHHSEEEHHHHHHHCT--HHHHHHHHHHHHHHCH CS
         Mga 21 llkflfeeeevsieelaqelyiSestlkrkikelnklLk 59
                l  f++  ee  + + a++l+iS+s l r+i++l+++L 
  CTQ26586.1  7 LKYFVVVAEEEHVGRAAERLHISQSPLSRQIAQLEERLG 45
                4445557888889999********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2126.33
//
Query:       CTQ26587.1  [L=122]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 917.66
//
Query:       CTQ26588.1  [L=230]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-24   85.8  12.8    4.8e-24   85.2  12.8    1.3  1  FCD       FCD domain
    3.7e-13   48.9   0.0    1.2e-12   47.2   0.0    1.9  1  GntR      Bacterial regulatory proteins, gntR family
     0.0027   17.8   0.0     0.0042   17.2   0.0    1.3  1  DUF480    Protein of unknown function, DUF480
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.24   11.1   0.0    1.5  1  HTH_41    Helix-turn-helix domain
       0.11   11.9   0.0       0.17   11.3   0.0    1.2  1  Pox_A32   Poxvirus A32 protein


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2  12.8   1.3e-27   4.8e-24       1     123 [.      80     210 ..      80     212 .. 0.93

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 1.3e-27
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaa....egdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlals....spe 91 
                 d++++Ra +E++++rla++r+ d+++ael + ++ l + ++    e+ l+e+ + ++aFH+a+++ +g+++l ++ e+l +  +r+r ++l+    s e
  CTQ26588.1  80 DIFDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLESceasEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRttvlSVE 178
                 89***************************9999777766665556777788************************************999999999999 PP

         FCD  92 rleeslaeHraildAirardadaAraamrrHl 123
                  le+ + +H++++dAi+arda++A a+mr+Hl
  CTQ26588.1 179 MLEDKHVQHQTLVDAILARDAEQASALMREHL 210
                 99999999***********************9 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   3.5e-16   1.2e-12       7      64 .]      14      70 ..      12      70 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 3.5e-16
                HHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  7 erLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                + L++dI++g++ p +kL + + L +++g +  ++ReAL++L+ae lv++ +++G +V
  CTQ26588.1 14 RWLKNDIIRGVYHPDEKL-RMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRV 70
                569***************.************************************988 PP

>> DUF480  Protein of unknown function, DUF480
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-06    0.0042      52     142 ..      48     141 ..      42     148 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHHTTSEEEE..--SS--EE.EE-HHHHHT--HHHHHHHHHHHH.H-S.B-HHHHHHHHTTTS--SSHHHHHHHHHHHHHT..TSEEE CS
      DUF480  52 qealdeLkkkklvseaseagsRveky.ehrleealklseaelavlalllL.RGp.qtageLrtrserlaefadveeveavLeelaereeplvvk 142
                 +eal++L +++lv+ +++ g Rv+   e++l + ++ +++  a+l  l + RG    ++eL +r++ l +++++e+ e+ L+e  +r++++ + 
  CTQ26588.1  48 REALSQLVAERLVTVVNQKGYRVAPMsEQELLDIFDARANMEAMLVRLAIeRGGdEWEAELLARAHLLNKLESCEASEHLLDEWDQRHQAFHTA 141
                 789*******************9865278899999999988877776655387615689*************************9998877655 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.7e-05      0.24       9      39 ..      33      63 ..      30      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.7e-05
      HTH_41  9 IeelakeleLSvGlvQkALklLeddkaisle 39
                 + l + ++L+vG    AL  L++++ +++ 
  CTQ26588.1 33 MSLLTSRYGLGVGPLREALSQLVAERLVTVV 63
                5778999*********************974 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.7e-05      0.17      10      54 ..     134     178 ..     127     195 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.7e-05
     Pox_A32  10 lkkpFrlalvGgsGsGktvyLlsLlrtlvkkykhifLltpvknse 54 
                 +++ F+ a+v g Gs   + +++ l  l  +y++i+L t+v + e
  CTQ26588.1 134 RHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVE 178
                 5789***********999999999999*************98866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1806.10
//
Query:       CTQ26589.1  [L=467]
Description: gamma-aminobutyrate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.3e-124  416.4  47.2   1.5e-124  416.3  47.2    1.0  1  AA_permease     Amino acid permease
      2e-38  132.4  46.6    2.2e-38  132.2  46.6    1.0  1  AA_permease_2   Amino acid permease
    5.8e-05   22.1  19.7    5.8e-05   22.1  19.7    3.1  2  Spore_permease  Spore germination protein


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.3  47.2  2.5e-128  1.5e-124       1     476 [.      19     456 ..      19     459 .. 0.98

  Alignments for each domain:
  == domain 1  score: 416.3 bits;  conditional E-value: 2.5e-128
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  hv++ +++gviG+ lfvg++v++++aGp ++llayl+ag+ ++++m++l+e+a++ p +g+f+tya + +g+++G++iG++y+++w++v++le ++a+
   CTQ26589.1  19 HVTMLSIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAA 115
                  9***************************.99******************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                  i+++ w  v+ +p  w +++v++++l++ nl++vk yge+ef+lal+k+iai+afi++g++ ++g  p ++  g++ l+++g+    ++p+g      
   CTQ26589.1 116 IILHSW--VPGVP-VWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVsGISRLWEHGG----FMPNG------ 200
                  ******..*****.*********************************************************************....99999...... PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplin 293
                    f +++s++ i +f+f+G e+v+i+a+E++ P k+i +a+++v++ri ifY++s++++++l+p+n++gl +      + + ++++ + +++++ ++ 
   CTQ26589.1 201 --FGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKS-----IGSYRSVLELLHIPYAKLIMD 291
                  ..**********************************************************************.....799****************** PP

  AA_permease 294 aviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfR 391
                   vil++++s++ns+ly+asR+lysl+++g aP+++++ ++++ P++a+lls+ +++l ++++++++a  +vf+fl+ +s++i+l+v+l+i++s+lr+R
   CTQ26589.1 292 GVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPA--KVFKFLIDSSGAIALLVYLVIAVSQLRMR 387
                  *******************************************************************..***************************** PP

  AA_permease 392 kalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrpq 476
                  k l++qg    e++ +++l+p++++lv+a+++++l+++ + + ++             ++++++ ll l i+++v ++ ++k+  
   CTQ26589.1 388 KILQAQGG---EIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQ-------------LEVISTGLLALGIICTVPIMSRWKKLV 456
                  ********...66****************************7777.............99**************99999999876 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2  46.6   3.8e-42   2.2e-38       5     421 ..      19     444 ..      15     448 .. 0.85

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 3.8e-42
  AA_permease_2   5 safalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsv 98 
                     +++l+i  vig+  fv +  ++a +gpa++l +++a l+++ + +  +aE++ a p+ g  ++y+ +a+g++++++ +w++w+++v+v+++ + +
     CTQ26589.1  19 HVTMLSIAGVIGASLFVGSsvAIAEAGPAVLLAYLFAGLLVV-MIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANI 113
                    6899999999999999988888999***********999995.555688***9889**********************************998888 PP

  AA_permease_2  99 aasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl......stetdtffpngwp 188
                    aa  l +++ p      +++ l+  +i++ ++  n++++k ++ + ++l+++k+ + ++ +i+lg +++ g +   +       +e++ f+png  
     CTQ26589.1 114 AAIILHSWV-PG-----VPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKV-IAILAFIVLGAVAITGFYPYAEvsgisrLWEHGGFMPNGFG 202
                    877777765.43.....57999999*****************************.67777888888888775555446688665555569****** PP

  AA_permease_2 189 gvllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilial 282
                     vl+++li+++sf G e ++  + e   + k + +a+++++  ++++yl   + +++ +p++     ++ ++ +  ++e ++ + ++ i+  +i l
     CTQ26589.1 203 AVLSAMLITMFSFMGAEIVTIAAAEsdTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGL-KS-IGSYRSVLELLHIPYAKLIMDGVILL 296
                    *************************766669******************************99875.33.44689********************* PP

  AA_permease_2 283 sllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrph 378
                    s+  ++n+a++++sr+l++l+r g  P  + ++n+ ++p++a+ l+   +++ +++ ++a+++ + fl + s   ++++yl+++++ l  rk    
     CTQ26589.1 297 SVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQA 392
                    *******************************************************999*********************************99887 PP

  AA_permease_2 379 l.kr.....pgkilvaiigalfllfll.valffppkgpatqss..liytiil 421
                    + ++     + ++ ++++ + f++f+l v+lf p +++++ s+  l++ ii+
     CTQ26589.1 393 QgGEirlrmWLYPYLTWLVIAFITFVLvVMLFRPAQQLEVISTglLALGIIC 444
                    7533556643333466666666666551666667767775554223333555 PP

>> Spore_permease  Spore germination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1  19.7   9.7e-09   5.8e-05       4     232 ..      17     259 ..      14     264 .. 0.73
   2 ?   -4.9   9.3       1.6   9.4e+03      87     152 ..     374     449 ..     359     452 .. 0.58

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 9.7e-09
  Spore_permease   4 tkqlfvlivsfqlGvgiltlprsvaeqatpdgWisvllagiiililvllmlkllkkfpe.ktliellkkilgkwLGsllsilfilyFlllaafel 97 
                     ++ +++l ++ ++G+++ +   +++++a+p   ++ l+ag+++++++ ++ ++    p+  ++  + +k +g+w G +++ l+  +++l++  e+
      CTQ26589.1  17 SRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDtGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEA 111
                     567788889999*****999999999999999999999999999999999998888876257889**********************99999998 PP

  Spore_permease  98 RefseliqvflledtplwiiilllllvilYlvvkGieslar.eflfiivilliilllillfslk......laeiknlrPvlg......ngikpvl 179
                      + + +++ + ++ +p+w++ l++ l        ++++    ef +++  +++il +i+l  +       +ae+  +  +++      ng+  vl
      CTQ26589.1 112 NIAAIILHSW-VPGVPVWLFSLVITLALTGSNLLSVKNYGEfEFWLALCKVIAILAFIVLGAVAitgfypYAEVSGISRLWEhggfmpNGFGAVL 205
                     8777777776.599****988887776665555566655544333333333334433333333200000134444444444422222278899** PP

  Spore_permease 180 kslkttslsflgveillllvpflkdkkk.vkkaallgvlistllyllttlivil 232
                     +++  t++sf+g+ei+++       ++k +++a++  ++   ++yl +++iv++
      CTQ26589.1 206 SAMLITMFSFMGAEIVTIAAAESDTPDKhIVRATNSVIWRISIFYLCSIFIVVA 259
                     *********************999886526777888888888999999999876 PP

  == domain 2  score: -4.9 bits;  conditional E-value: 1.6
  Spore_permease  87 lyFlllaafelRefsel........iqvflledtplwiiill...lllvilYlvvkGieslareflfiivilliill 152
                     l++l++a+++lR+   l        + ++l++ +  w++i++   +l+v+l+   + +e+++ ++l + +i +++++
      CTQ26589.1 374 LVYLVIAVSQLRMRKILqaqggeirLRMWLYPYLT-WLVIAFitfVLVVMLFRPAQQLEVISTGLLALGIICTVPIM 449
                     66677777777665443333333357899999885.44444401144555555556666666655555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 3462.37
//
Query:       CTQ26590.1  [L=427]
Description: 4-aminobutyrate aminotransferase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.7e-144  480.8   0.1   3.1e-144  480.6   0.1    1.0  1  Aminotran_3      Aminotransferase class-III
  ------ inclusion threshold ------
      0.014   14.6   0.1      0.047   12.9   0.1    1.8  1  Aminotran_1_2    Aminotransferase class I and II
       0.12   11.7   0.2       0.27   10.5   0.2    1.5  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  480.6   0.1  5.1e-148  3.1e-144       4     405 ..      17     420 ..      14     421 .. 0.98

  Alignments for each domain:
  == domain 1  score: 480.6 bits;  conditional E-value: 5.1e-148
                  TTB--SC.EEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..S.EEEEESSHHHH CS
  Aminotran_3   4 reednll.lvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgld.kvflansGseA 99 
                  r++ +++ +++++ae+++++dv+g++ylD++++iav+n+Gh hP+vv+av++q++klsh++f++l++ep+l+l+ek+++ +p+++  k++l+++GseA
   CTQ26590.1  17 RGVGQIHpIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQVVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAkKTLLVTTGSEA 114
                  66777777***************************************************************************88789********** PP

                  HHHHHHHHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEE CS
  Aminotran_3 100 vetAlKlarkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvi 197
                  ve+A+K+ar+      at ++  iaf+ga+HGrt+++ls+tg+ ++y++++g ++ +v+r+ yp+  +  + +e+ a++++++++  +++ +++aA+i
   CTQ26590.1 115 VENAVKIARA------ATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKN--DAAPEDIAAII 204
                  **********......*****************************************************9999***********9..99********* PP

                  E-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-H CS
  Aminotran_3 198 vEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnp 295
                  +Ep+qgegG+++asp+f+++lr+lc++h+++li+DEvq+G+GrTG+lfA+e++gv++D++t+aK+++gG+pl+ v+++aevm+a+apg+ g+T++Gnp
   CTQ26590.1 205 IEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNP 302
                  ************************************************************************************************** PP

                  HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC......HHHHHHHHHCTEE-EEETT..TEEEE- CS
  Aminotran_3 296 lacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke......keilkkakekGvlilsaGd..nvirll 385
                  +aca+alavl+i+e+e+lle+a++lg+ l++gL ++++++  i++vRg+G+miaiel+ee ++ +      ++i+++a++kG+++ls+G+  nv+r+l
   CTQ26590.1 303 IACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDRSRpnarltADIVARARDKGLILLSCGPyyNVLRIL 400
                  **************************************************************88899****9************************** PP

                  --TT--HHHHHHHHHHHHHH CS
  Aminotran_3 386 ppliitdeeidelleilkka 405
                   pl+i++++i+++l+i+ ++
   CTQ26590.1 401 VPLTIEEAQIEQGLKIIADC 420
                  *****************987 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   7.8e-06     0.047     164     276 ..     216     323 ..      44     360 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.8e-06
                    B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHH CS
  Aminotran_1_2 164 vatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllq 257
                    +a+++  + l +l+++++++l+ De+ +g   + + ++   ++v+     +  ++++K+ +  G+ ++ ++g a+v ++++    ++++    ++ 
     CTQ26590.1 216 AASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVA-----ADITTFAKSIA-GGFPLAGVTGRAEVMDAIAPGGLGGTYagNPIAC 305
                    4677888999999**************999999654333344444.....45557777763.3455555999999999999888887777777777 PP

                    HHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 258 aavaaalsdallkqselee 276
                    aa++a+l+ +++++  le+
     CTQ26590.1 306 AAALAVLQIFEQEN-LLEK 323
                    77777777777642.2333 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   4.5e-05      0.27     122     167 ..     217     266 ..     214     272 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.5e-05
                      GB---HHHHHHHHHHCT-EEEEE-TT-....TT-EETTEECCCSSSEEEE CS
  DegT_DnrJ_EryC1 122 GqvadmdalkaiaakhglkvieDaAhA....lGatykgkkvGalgdaavf 167
                        +a m++l+a++++hg+++i D  ++     G+ ++ +++G  +d+++f
       CTQ26590.1 217 ASPAFMQRLRALCDEHGIMLIADEVQSgagrTGTLFAMEQMGVAADITTF 266
                      56788******************888622224555666999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3121.54
//
Query:       CTQ26591.1  [L=482]
Description: succinate-semialdehyde dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.6e-176  586.7   0.1   2.9e-176  586.5   0.1    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
       0.24   10.8   0.0          1    8.8   0.0    1.9  1  DUF1487   Protein of unknown function (DUF1487)
       0.25   11.9   1.0       0.54   10.8   1.0    1.5  1  TilS      TilS substrate binding domain


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  586.5   0.1  4.9e-180  2.9e-176       1     461 [.      19     477 ..      19     478 .. 0.98

  Alignments for each domain:
  == domain 1  score: 586.5 bits;  conditional E-value: 4.9e-180
                 EET-SSSE.EEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHH CS
      Aldedh   1 wveseset.ievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlr 98 
                 w+++ ++  i+v+nPa+ge++++vp+++a++ ++a++aA++a +aw++l+a+eRa+iLr++ dl+ e++++la+l+tle+Gkplaea++e+++a+++++
  CTQ26591.1  19 WRDAPNGDvIAVTNPANGEQLGSVPKMGADETREAIEAANRALPAWRALTAKERANILRRWFDLMMENQDDLARLMTLEQGKPLAEAKGEISYAASFIE 117
                 666666444****************************************************************************************** PP

                 HHHHHHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCH CS
      Aldedh  99 yyaelaeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsev 196
                 ++ae+ ++++g+++p  +++k+ lv ++P+Gv++aItPWNfP++++++k+ palaaG+t+vlKPa++tp+sal+lael+++ag+P+gv+nvvtgs   v
  CTQ26591.1 118 WFAEEGKRIYGDTIPGhQADKRLLVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELANRAGIPAGVFNVVTGSAGAV 216
                 ****************88********************************************************************************* PP

                 HHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT CS
      Aldedh 197 gealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakk 295
                 g +l+++p v+k+sftGste+gr++++++ak++k+v+lElGG++p+iv++daDldkave+++++ f+naGQ+C++a+rl+vq+++yd+f ekl++a++k
  CTQ26591.1 217 GGELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAVEK 315
                 *************************************************************************************************** PP

                 --BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSS CS
      Aldedh 296 lkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdte 394
                 l++gd+l++ ++ GPli+e++++kve+++++a+++gak+++Gg   +++   g+f++Pt+l nv++++++a+eE+FGP++++++fkde+++i+ aNdte
  CTQ26591.1 316 LRIGDGLQDGVTTGPLIDEKAVAKVEEHIADAIAKGAKVVTGG---KPHALGGNFFQPTILVNVPDSAKVAKEETFGPLAPLFRFKDEADVIAQANDTE 411
                 *******************************************...889999*********************************************** PP

                 EESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEE CS
      Aldedh 395 yGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevkt 461
                 +GLaa+ +++dl+r++rv e+le+G ++iN+ + +++ a pfgGvk+SglGreg+k+g+e+y+e+k 
  CTQ26591.1 412 FGLAAYFYARDLSRVFRVGEALEYGIIGINTGIISTEVA-PFGGVKASGLGREGSKYGIEDYLEIKY 477
                 ********************************9999999.************************995 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00017         1       8      61 ..     262     317 ..     259     451 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00017
     DUF1487   8 mvifedgDlnsale.alveslkePfaegava.tvlveesirdefvervrsklkpls 61 
                 +++f+d+Dl++a+e al++++++  ++   a  + v++ + d f e++++ +++l 
  CTQ26591.1 262 FIVFDDADLDKAVEgALASKFRNAGQTCVCAnRLYVQDGVYDRFAEKLQQAVEKLR 317
                 589*********98578889999888777763599***************999874 PP

>> TilS  TilS substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.0     9e-05      0.54       3      23 ..      61      81 ..      60      96 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9e-05
                HHHHHHS-HHHHHHHHHHHHH CS
        TilS  3 iaaLaaLsparqrrlLRrWLa 23
                ++a++aL +  ++++LRrW++
  CTQ26591.1 61 LPAWRALTAKERANILRRWFD 81
                789****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3682.80
//
Query:       CTQ26592.1  [L=422]
Description: putative enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-68  231.9   0.1    2.1e-68  231.5   0.1    1.1  1  DAO             FAD dependent oxidoreductase
    2.2e-05   23.8   0.7       0.15   11.2   0.0    2.1  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.7e-05   22.9   0.0     0.0067   15.0   0.0    2.3  2  Mqo             Malate:quinone oxidoreductase (Mqo)
    0.00016   22.1   0.3       0.37   11.4   0.0    2.5  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    0.00027   21.0   0.1       0.21   11.6   0.0    2.3  2  NAD_binding_9   FAD-NAD(P)-binding
     0.0014   17.8   1.0     0.0042   16.2   1.0    1.7  1  FAD_binding_2   FAD binding domain
     0.0036   16.6   0.0     0.0054   16.1   0.0    1.2  1  Amino_oxidase   Flavin containing amine oxidoreductase
     0.0056   16.9   0.1      0.017   15.3   0.1    1.8  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0068   15.2   0.3        2.5    6.7   0.0    2.1  2  HI0933_like     HI0933-like protein
  ------ inclusion threshold ------
      0.021   13.9   0.2       0.97    8.4   0.1    2.1  2  Lycopene_cycl   Lycopene cyclase protein
      0.023   13.6   0.3       0.55    9.0   0.0    2.0  2  Trp_halogenase  Tryptophan halogenase
      0.039   13.2   2.0       0.95    8.6   0.0    2.1  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
        0.1   11.8   0.0       0.17   11.1   0.0    1.3  1  Thi4            Thi4 family


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.5   0.1   1.5e-71   2.1e-68       1     350 [.       3     390 ..       3     392 .. 0.83

  Alignments for each domain:
  == domain 1  score: 231.5 bits;  conditional E-value: 1.5e-71
                 EEEEECTSHHHHHHHHHHHHT.T...EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarr.g...VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeee 95 
                 d viiGGGiiG+stA++L +  +   ++llek+  ++++++g+nsg++h+g++y+p +s +a+++l++++  ++++e++g  i y+ +G++ +a+++ e
  CTQ26592.1   3 DFVIIGGGIIGMSTAMQLIEIyPdarIALLEKEAGPACHQTGHNSGVIHAGVYYTP-GSLKAQFCLAGNRATKAFCEQNG--IRYDVCGKMLVATSPLE 98 
                 89****************76444577**************************9777.66999******************..78*************** PP

                 HHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECT.EEEEE CS
         DAO  96 lealdkllallleagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve.rttp.genda 192
                 +e++++l+++ +++gl+ e+l+a e+re+ep++ g lg++f+p++g+v +++++aa+a+ +ea+G++i++++ev +l+e+   ++gv  rt++ ge  +
  CTQ26592.1  99 MERMRALWDRTAANGLQREWLSAGELREREPNITG-LGGIFVPSSGIVSYREVAAAMAKNFEAKGGTIVYNAEVSALKEH---ASGVViRTSQgGEY-E 192
                 ***********99***99*****99******7533.799**************************************887...77888788887764.5 PP

                 EEEEEE--GGGHH.HHHTT.CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSE................... CS
         DAO 193 adavVnaaGawsd.llgll.keldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtad................... 270
                 a +++ + G+ +d l+++l  +    i p+rg+++ l+p +++ v +++i+p+p++ +++ gv++t++ dg+v vG++a+                   
  CTQ26592.1 193 ASTLIACSGLMADrLVKMLgVDPGFIICPFRGEYFQLAPQHNQIV-NHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVlalkregyrkrdisladtl 290
                 588**********55588874445699************999776.56***********************************9888666666655555 PP

                 ........EETTCSSTSCSHH................HHHH.HHHHHHHHSGGG..CGEEEEEEEEEE..E.TTS....SEEEEEEETEEEEEEEEECT CS
         DAO 271 ........eesgdddpevdee................dide.llealrklfPql..gdvlrkwaGlrp..l.pdg....lpligetpgvkglylatGhs 335
                                     +                 ++  +l+ ++k++P+l  +d++   aG+r+    p g    ++l+     + + ++ +++ 
  CTQ26592.1 291 eiltspgiR-----------RvlqnnlrsglgemknsLCRSgYLRLVQKYCPSLtlSDLRPWPAGVRAqaVsPQGklidDFLFVT---TARSIHTCNAP 375
                 555555440...........04444555555544444444469**********55488887777****64234444444444433...579******** PP

                 TTHHHHHHHHHHHHH CS
         DAO 336 ghGltlapatGklla 350
                 +++ t+a+ +G +++
  CTQ26592.1 376 SPAATSAIPIGAHIV 390
                 ***********9987 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.2   0.00014      0.19       2      31 ..       3      36 ..       2      54 .. 0.67
   2 !   11.2   0.0   0.00011      0.15     183     242 ..     148     207 ..     144     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
                 SEEEE--SHHHHHHHHHHHH..HTS-EEEEE..T CS
                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxx..x RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq..agakvtlve..l 31
                 d v+iGgG+ G+++a++l +    a+++l+e  +
   CTQ26592.1  3 DFVIIGGGIIGMSTAMQLIEiyPDARIALLEkeA 36
                 6677777777777777777764477777776433 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00011
                  HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 183 kelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpste 242
                  +e++aa+++ +e++G +++ +++v +++++ + +   +++g e++a++++ + G+ +++ 
   CTQ26592.1 148 REVAAAMAKNFEAKGGTIVYNAEVSALKEHASGVVIRTSQGGEYEASTLIACSGLMADRL 207
                  57899*********99999***********999999******************999864 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.8e-06    0.0067       3      56 ..       2      53 ..       1      65 [. 0.85
   2 !    5.6   0.0    0.0036       4.9     177     444 ..     145     393 ..     137     409 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.8e-06
         Mqo  3 vdvvliGaGimsatlgvllkelepelsievlerldkvaeessnawnnaGtGHsa 56
                +d v+iG+Gi+  + ++ l e+ p+++i++le+    a    ++ +n+G  H++
  CTQ26592.1  2 YDFVIIGGGIIGMSTAMQLIEIYPDARIALLEKEAGPACH--QTGHNSGVIHAG 53
                699*****************************98887765..456788888876 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0036
         Mqo 177 vnfgaltrqllkalekkkgvelklkhevkdlkreedgkWkvkvkdlktgekkkvkakfvfiGaGGgalklLqksgipeakgyggfPvsGqflvck.npe 274
                 v + +++ +++k+ e+ kg ++ ++ ev+ lk++++g   v ++   t++  +++a+ +   +G +a +l++  g++   g+   P  G++++   +++
  CTQ26592.1 145 VSYREVAAAMAKNFEA-KGGTIVYNAEVSALKEHASG---VVIR---TSQGGEYEASTLIACSGLMADRLVKMLGVDP--GFIICPFRGEYFQLApQHN 234
                 7788889999999965.88889999999999998886...5555...4455567888899999999999999999875..6777788999887642344 PP

         Mqo 275 vveqheakvYgkaavgaPPmsvpHlDtRvidgkksllfGPfagfstk...flke.gslldllksvklsnllpllavglknldLvkYlieqvlkskedrl 369
                  + +h   +Y   + + P + v Hl tR+idg   +  GP a  + k   + k+  sl d l+ +++  +  +l+  l+   L +  ++     ++  l
  CTQ26592.1 235 QIVNH--LIYPIPDPAMPFLGV-HL-TRMIDGS--VTVGPNAVLALKregYRKRdISLADTLEILTSPGIRRVLQNNLRS-GLGE--MK-NSLCRSGYL 323
                 44445..589999999988887.88.8999996..556999988876333333213555555555555555555444332.2222..22.223355667 PP

         Mqo 370 ealreflpeakkedWelvvaGqRvqvikkdeekggvlefGtevvasadgslaalLGasPGAstavsimlevlekc 444
                 + +++++p+ + +d + + aG R q +  + +    + f      ++ +s+ +    sP A  a++i  ++++k+
  CTQ26592.1 324 RLVQKYCPSLTLSDLRPWPAGVRAQAVSPQGKLIDDFLFV-----TTARSIHTCNAPSPAATSAIPIGAHIVSKV 393
                 7889999999999999999999999999855544444443.....345777777778888888888777777665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0024       3.3       2      20 ..       4      22 ..       3      38 .. 0.85
   2 !   11.4   0.0   0.00027      0.37      41      78 ..     149     183 ..     145     189 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0024
                EEEECSSHHHHHHHHHHHH CS
   Pyr_redox  2 vvvvGgGyiglElAgalae 20
                 v++GgG ig+  A  l e
  CTQ26592.1  4 FVIIGGGIIGMSTAMQLIE 22
                59**********9998865 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  41 easkilqeklekngievllntkveeiegsedgvesvkl 78 
                 e+++++++++e++g ++++n++v +++++++g   v++
  CTQ26592.1 149 EVAAAMAKNFEAKGGTIVYNAEVSALKEHASG---VVI 183
                 7899***************************9...433 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0031       4.3       1      33 [.       5      34 ..       5      47 .. 0.84
   2 !   11.6   0.0   0.00015      0.21     101     154 ..     148     201 ..     101     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0031
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdp 33
                   +i+G+G+ G++++ +L++      + +i l ++
     CTQ26592.1  5 VIIGGGIIGMSTAMQLIEIY---PDARIALLEK 34
                   7*****************95...7888888887 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00015
  NAD_binding_9 101 rdlfeellarlpegvtvevhraevvdleeradgqavlladgaslaadaVvLAlG 154
                    r+++++++++++++    v++aev +l+e+a+g+ +++++g +++a  ++ + G
     CTQ26592.1 148 REVAAAMAKNFEAKGGTIVYNAEVSALKEHASGVVIRTSQGGEYEASTLIACSG 201
                    56777788889888889999******************************9998 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.0     3e-06    0.0042       1     200 [.       3     200 ..       3     217 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3e-06
                    SEEEE--SHHHHHHHHHHHH..TTT-EEEEESSSGGGS.GGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaae..aGlkvavvekeqefgg.atawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeav 93 
                    D ++iG+G+ G++ A+++ e    +++a++eke    + +t   +G i a  + +  ++  k +  l+ + + ka  e++  ++   +   ++   
     CTQ26592.1   3 DFVIIGGGIIGMSTAMQLIEiyPDARIALLEKEAGPAChQTGHNSGVIHAGVYYTPGSL--KAQFCLAGNRATKAFCEQNGIRYDVCGKMLVATSP 96 
                    88*****************997888********99888888888888887664444233..34577777777777777775555444555555555 PP

                    HHHHHTT----BCCTS..SB-EEE-TT-SST..EEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTT CS
  FAD_binding_2  94 deLeelgvpfsrtedg..pvdvrelGglsat..artlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesg 185
                     e+e++ + ++rt+ +  +  +   G+l+++    t+ +    ++  +v+ ++++a++++++++ g ++  ++e+ +L   +++++G+v++ +++g
     CTQ26592.1  97 LEMERMRALWDRTAANglQREWLSAGELRERepNITGLGGIFVPSSGIVSYREVAAAMAKNFEAKGGTIVYNAEVSAL---KEHASGVVIRTSQGG 189
                    6777778888886666686666666766666553555544444458999*****************************...78********87777 PP

                    CEEEEEESEEEE--- CS
  FAD_binding_2 186 revrirakavvlatg 200
                    + ++     +++a+ 
     CTQ26592.1 190 EYEA----STLIACS 200
                    7665....4444444 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.9e-06    0.0054     201     260 ..     136     200 ..      93     209 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.9e-06
                    CCCEETTH...THHHHHHHHH..TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S CS
  Amino_oxidase 201 slllprgG...lsqlpealae..elrgldirlntrVkeikregdgvtvtledgevveaDaVvvTv 260
                    ++++p  G   +++++ a+a+  e++g++i +n++V+ +k +++gv +++++g ++ea   + ++
     CTQ26592.1 136 GIFVPSSGivsYREVAAAMAKnfEAKGGTIVYNAEVSALKEHASGVVIRTSQGGEYEASTLIACS 200
                    4444444466699*******************************************999877665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.2e-05     0.017       1      31 [.       6      38 ..       6      58 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.2e-05
                   EE--SHHHHHHHHHHHC.C.TEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLak.a.gfdvlllekrdrl 31
                   I+G+G+ G+++A  L + + ++++ llek  ++
     CTQ26592.1  6 IIGGGIIGMSTAMQLIEiYpDARIALLEKEAGP 38
                   9**************99647*********9877 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0021       2.8       2      33 ..       3      36 ..       2      41 .. 0.88
   2 !    6.7   0.0    0.0018       2.5     110     163 ..     149     201 ..     142     207 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0021
                 SEEEE--SHHHHHHHHHH..HHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisa..akrgkrVlllekak 33
                 d ++iGgG  G+ +A+++     ++r++llek+ 
   CTQ26592.1  3 DFVIIGGGIIGMSTAMQLieIYPDARIALLEKEA 36
                 78***************97677999*****9975 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0018
                  HHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 110 divdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  ++  a+ k+ +++g ++ ++ ev++++++++g + ++t++++e+ea++l+  +G
   CTQ26592.1 149 EVAAAMAKNFEAKGGTIVYNAEVSALKEHASG-VVIRTSQGGEYEASTLIACSG 201
                  7888999*******************888888.999999*******99987666 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0007      0.97       1      35 [.       3      37 ..       3      48 .. 0.87
   2 ?    3.4   0.0     0.024        33      84     144 ..     145     205 ..     138     218 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0007
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasps 35
                   D v+iG+G  g+s A +l+e  p+ ++ l+e  ++
     CTQ26592.1  3 DFVIIGGGIIGMSTAMQLIEIYPDARIALLEKEAG 37
                   89**************************9986544 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.024
  Lycopene_cycl  84 vsskrlkeellerlv.engvklleakvesveeeeageslvvleggrkirarlvvdarglasl 144
                    vs ++ ++ +++++  ++g + ++a v + +e+    +++ ++ g + +a++ +  +gl + 
     CTQ26592.1 145 VSYREVAAAMAKNFEaKGGTIVYNAEVSALKEHAS-GVVIRTSQGGEYEASTLIACSGLMAD 205
                    7778899999999988999********99987776.899999999999******99997665 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0004      0.55       2      37 ..       4      38 ..       3      47 .. 0.89
   2 ?    2.6   0.0     0.035        48     155     210 ..     149     203 ..     145     213 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0004
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS- CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlveseeig 37
                     vi+GGG+ G  +A+ l +   + +++ l+e+e+ +
      CTQ26592.1  4 FVIIGGGIIGMSTAMQLIEIYPD-ARIALLEKEAGP 38
                    69*******************54.********9765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.035
                     HHHHHHHHHHHHC.T-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG CS
  Trp_halogenase 155 lyakfLrrvaear.GvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfr 210
                     ++a  + ++ ea+ G  + +++v   + +++g v  +r+++g e+ea   i csG  
      CTQ26592.1 149 EVAAAMAKNFEAKgGTIVYNAEVSALKEHASGVV--IRTSQGGEYEASTLIACSGLM 203
                     5677888888999455566788888888889998..78999**************75 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.8     0.025        35       1      20 [.       5      24 ..       5      38 .. 0.76
   2 ?    8.6   0.0   0.00069      0.95      97     135 ..     164     203 ..     142     212 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.025
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkag 20
                 +IiG+G +G+++a++l ++ 
   CTQ26592.1  5 VIIGGGIIGMSTAMQLIEIY 24
                 7************9997764 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00069
  Pyr_redox_3  97 piklfeeVesvkkedegfevetske.tyeAkkviiAtGef 135
                   i ++ eV ++k++++g +++ts++ +yeA+++i   G +
   CTQ26592.1 164 TIVYNAEVSALKEHASGVVIRTSQGgEYEASTLIACSGLM 203
                  68899******************977********999976 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.17      19      52 ..       3      37 ..       1      49 [. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                EEEEE--SHHHHHHHHHHHHC.TTS-EEEEESSSS CS
        Thi4 19 DvvivGaGssGLtaayylakk.pdlkvailersvs 52
                D vi+G+G  G+++a  l +  pd ++a+le++  
  CTQ26592.1  3 DFVIIGGGIIGMSTAMQLIEIyPDARIALLEKEAG 37
                99**************999999*********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3274.83
//
Query:       CTQ26593.1  [L=338]
Description: hypothetical protein CH1034_130044 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-149  496.9   0.0   1.8e-149  496.7   0.0    1.0  1  CsiD      CsiD
    3.1e-08   33.8   0.1    1.3e-07   31.7   0.1    1.8  1  TauD      Taurine catabolism dioxygenase TauD, TfdA family


Domain annotation for each model (and alignments):
>> CsiD  CsiD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  496.7   0.0    2e-153  1.8e-149       1     295 []      34     327 ..      34     327 .. 0.99

  Alignments for each domain:
  == domain 1  score: 496.7 bits;  conditional E-value: 2e-153
                 EEEEE-SS-TTEEEEEE-HHHHHHHHHHHTTS-HHHHHH-THHHHHHHHHHHHHTTT-HHHHHHHHHH-TT--EEEEEETT--SGGGHHHHHHHHHHHH CS
        CsiD   1 fsieehpeskrllevkleeetlekfleevaeldvqaleykpflrfrvakildklveeklkkllkeilkdretgallieaegvdevedaddlvklstava 99 
                 fs +++++s+rlle+++++et ++fl++va+++vqaleyk+flrf+v kild+l++++l++ll ++l dr++galli+ eg+d+v++a+++vkl+tava
  CTQ26593.1  34 FSFTPSAQSPRLLELTFSAETTTQFLQQVAQWPVQALEYKSFLRFQVGKILDDLCGNQLQPLLIKTLLDRAEGALLINGEGIDHVSQAEEMVKLATAVA 132
                 678899********************************************************************************************* PP

                 HHHEEE---TTTSSSSEEEEE---------TT-TT--EEEE-S-TTSSS---EEEEEEEEEES--B--EEEEEGGG-TTHHHHHTSGGGGS-EEE--SS CS
        CsiD 100 hliGrsnfDamsgkyyarfvvkntDnsDsyLrqayrklelhnDGtyveektdyvlmmkideenaegGeslllhlDdWedldkflndplakrellykaPa 198
                 hliGrsnfDamsg+yyarfvvkn+DnsDsyLrq++r++elhnDGtyvee+tdyvlmmkide+n++gG+slllhlDdWe+ld+f++dpla+r+++++aP+
  CTQ26593.1 133 HLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELHNDGTYVEEQTDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDEFFRDPLARRPMRWAAPP 231
                 *************************************************************************************************** PP

                 -TT----EEE-S.EEE-TTS-EEE---TTTEE--SHHHHHHHHHHHHHHHT-TT-EEE---TT-EEEEETTTEEEEE--B---TT-EEEEEEEEEEE CS
        CsiD 199 sknveedvehpvffeedkegkpvisyiDqfvqPknleeglyLkelseslenskkklevkvpvGslllinnlfwlhGrdkfeeneelrreLlrqrGlf 295
                 sknv++dv+hpv f++d+ g+pv++yiDqfvqPk++eeg++L++ls++le+sk+ l+++vpvG++llinnlfwlhGrd+f+++++lrreL+rqrG+f
  CTQ26593.1 232 SKNVSKDVFHPV-FDVDSLGRPVMRYIDQFVQPKDFEEGTWLSRLSDALETSKNILSIPVPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYF 327
                 ************.**********************************************************************************98 PP

>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   1.5e-11   1.3e-07      33     266 ..     100     322 ..      85     323 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.5e-11
        TauD  33 ll.aeygvvvfrgfpl....speqqlefarrfG.plygtpgrgtntkygevldvssvyesadianlayttllwHtDlsylesppgiqlLhcleapa.tG 124
                 ll +  g++++ g ++    ++e+ +++a ++   + + ++++ +  y   ++v++v++s++  +  +  + +H+D +y e+ ++++l++ +  +  +G
  CTQ26593.1 100 LLdRAEGALLINGEGIdhvsQAEEMVKLATAVAhLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELHNDGTYVEEQTDYVLMMKIDEQNmQG 198
                 444457888888876666678888888888886677788888899999999999998888888887777777******************9999668** PP

        TauD 125 GetpfvDgraaynaLpeelpell.egltavrvyyhyrggglrteqelpavdkhprtghpvvrthpvltgrkallvnppfatrieglgtpeskelldale 222
                 G++++      +++L+e  ++ l ++ + + ++               +++  + + hpv+ ++    gr+  +    + ++++  ++ e+   l +l 
  CTQ26593.1 199 GNSLLLHLDD-WEHLDEFFRDPLaRRPMRWAAPP--------------SKNVSKDVFHPVFDVDS--LGRPVMR----YIDQFVQPKDFEEGTWLSRLS 276
                 *******999.99999888888743333333333..............3446999**********..8999986....4455546667778889***** PP

        TauD 223 elledpeftyrfqwqeGdlvifdNrrvlHgrtafdeg..eeRhllr 266
                 ++le  ++ ++++   G +++++N+  lHgr+ f ++   +R+l+r
  CTQ26593.1 277 DALETSKNILSIPVPVGKFLLINNLFWLHGRDRFTPHpdLRRELMR 322
                 **********************************544214478776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2502.18
//
Query:       CTQ26594.1  [L=85]
Description: conserved hypothetical protein; KpLE2 phage-like element [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-41  140.7   0.2    1.2e-41  140.6   0.2    1.0  1  YjhX_toxin  Putative toxin of bacterial toxin-antitoxin pair


Domain annotation for each model (and alignments):
>> YjhX_toxin  Putative toxin of bacterial toxin-antitoxin pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.2   6.6e-46   1.2e-41       1      85 []       1      85 []       1      85 [] 1.00

  Alignments for each domain:
  == domain 1  score: 140.6 bits;  conditional E-value: 6.6e-46
  YjhX_toxin  1 mniSkaeqrvLhvLaqGgrielerdekgkitevecvtreGwllsdldlavFrkLkrkrliaSkkgkpYritrkGleavraqldnr 85
                mn+S++eqr+LhvLa+Ggri++ rd++g+it+vec+treG+llsd++lavF+kLk+k+li+S +g+pYri+++Gl++vraq+dnr
  CTQ26594.1  1 MNLSRQEQRTLHVLAKGGRIAYVRDTSGRITAVECYTREGLLLSDCTLAVFKKLKTKKLIKSVNGQPYRINTTGLNNVRAQADNR 85
                9***********************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 684.75
//
Query:       CTQ26595.1  [L=249]
Description: putative methyltransferase; KpLE2 phage-like element [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-08   33.5   0.0    4.4e-08   33.1   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
      9e-08   32.7   0.1    1.4e-07   32.1   0.1    1.4  1  Methyltransf_25  Methyltransferase domain
    1.8e-05   25.3   0.0      3e-05   24.6   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    0.00016   21.1   0.0    0.00021   20.7   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
    0.00057   19.7   0.0     0.0012   18.6   0.0    1.4  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0058   16.3   0.0     0.0087   15.7   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.024   14.5   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
      0.016   15.9   0.0      0.028   15.1   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
      0.024   15.6   0.0      0.049   14.6   0.0    1.4  1  Methyltransf_24  Methyltransferase domain
      0.045   13.7   0.0      0.054   13.5   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
      0.054   13.2   0.0      0.075   12.7   0.0    1.1  1  GCD14            tRNA methyltransferase complex GCD14 subunit
       0.07   12.6   0.0       0.16   11.5   0.0    1.5  2  DOT1             Histone methylation protein DOT1
       0.12   11.9   0.0       0.16   11.5   0.0    1.1  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   3.2e-11   4.4e-08       4     126 ..      38     155 ..      35     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 3.2e-11
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.leklledekfDlilsnevlnaladpdkile 95 
                      g+++lDlG+G+Ge +  +a+    ++  +G+D+s    ++A ++a++lg++ +v+F ++d+          ++ D+  + ++       + ++e
       CTQ26595.1  38 GTTILDLGSGSGEMLCSWAR-D-HQIVGTGVDMSLLFSQQAAARAEELGVSdRVTFVHQDASGyVA----SQPCDVAACVGATWIGGGVAGTIE 125
                      789****************4.2.3555789********************99***********444....389**********999999***** PP

  Methyltransf_31  96 eiervlkpggilliedprllaelpakveees 126
                       +++ l pgg lli +p+ +++ pa +ee  
       CTQ26595.1 126 LLKQSLIPGGMLLIGEPW-WRKRPATAEEAV 155
                      ******************.777776666654 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.1     1e-10   1.4e-07       1      96 [.      41     134 ..      41     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1e-10
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarv 92 
                      +LdlG G+G+++  +a+   +   tgvD+s  + ++a++raee g+  +v+fv++da+ +  +++ +D+  ++ga  ++    ++ +++ +++ 
       CTQ26595.1  41 ILDLGSGSGEMLCSWARDH-QIVGTGVDMSLLFSQQAAARAEELGVsdRVTFVHQDASGYV-ASQPCDVAACVGA-TWIG-GGVAGTIELLKQS 130
                      8*****************5.688899*****************999***********9986.5679999999766.4443.3445555555555 PP

                      EEEE CS
  Methyltransf_25  93 Lkpg 96 
                      L pg
       CTQ26595.1 131 LIPG 134
                      5555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.2e-08     3e-05       1      95 [.      42     138 ..      42     139 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.2e-08
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+G+G+G +++ +a+      +gvD+s  + ++a ++a+e g+  +v+fv++da+   ++++ +D+  +  +      ++ +++ +++ L pg
       CTQ26595.1  42 LDLGSGSGEMLCSWARDHqIVGTGVDMSLLFSQQAAARAEELGVsdRVTFVHQDASG-YVASQPCDVAACVGATWIGGGVAGTIELLKQSLIPG 134
                      8**************888688899***********999999999************7.689999**9999998877788999999999999999 PP

                      EEEE CS
  Methyltransf_11  92 Gllv 95 
                      G+l+
       CTQ26595.1 135 GMLL 138
                      9887 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.5e-07   0.00021      50     120 ..      25      95 ..      16     139 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.5e-07
                 HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES- CS
        CMAS  50 KldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklld 120
                 K+ ++ + l++ pG t+Ld+G G G+++   ++ +++   g+ +S    ++a +r +el+++++v+   +d
  CTQ26595.1  25 KYATLGRALRMAPGTTILDLGSGSGEMLCSWARDHQIVGTGVDMSLLFSQQAAARAEELGVSDRVTFVHQD 95 
                 77777889******************************************************999877665 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   8.8e-07    0.0012      60     170 ..      24     138 ..      16     141 .. 0.76
   2 ?   -3.2   0.0       4.3   5.9e+03      39      69 ..     209     239 ..     204     241 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 8.8e-07
                 HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-GGGTTGGG-SEEEE.EESS.....B CS
        PCMT  60 hmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDGrkGyeekaPYdai.hvga.....a 151
                    a++   l++ +g+ +L++GsGsG      ar  + +g   +++ +  + ++a ++ ++l+++ +v++v+ D   Gy +  P d+   vga     +
  CTQ26595.1  24 EKYATLGRALRMAPGTTILDLGSGSGEMLCSWARDHQIVG--TGVDMSLLFSQQAAARAEELGVSdRVTFVHQD-ASGYVASQPCDVAaCVGAtwiggG 119
                 55677778899***************99998888887777..899999999************98799999999.579*99999996413444111114 PP

                 BSS--HHHHHTEEEEEEEE CS
        PCMT 152 apeiPealidQLkeGGrlv 170
                 +  + e l + L +GG l+
  CTQ26595.1 120 VAGTIELLKQSLIPGGMLL 138
                 4444455555566666665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.3
                 GGGTTSSS-EEEETTEEE--HHHHHHHHHHT CS
        PCMT  39 kekaYedaplsigynatiSaphmvalalell 69 
                 + ++++d + ++ ++ t    h v+ + e+l
  CTQ26595.1 209 EANPHDDFAPEVRQQLTTAPLHHVTWTREYL 239
                 5678888888888888888888888888887 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.3e-06    0.0087      12      46 ..      36      70 ..      29     100 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.3e-06
        MetW 12 kpgsrvldlGcGdGellellkeekqvdgrGlelde 46
                 pg+++ldlG+G Ge+l   + ++q+ g G++++ 
  CTQ26595.1 36 APGTTILDLGSGSGEMLCSWARDHQIVGTGVDMSL 70
                6899*************999999********9874 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.8e-05     0.024      21      74 ..      36      81 ..      15     154 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.8e-05
  Methyltransf_23 21 raggrvLdiGcGtG.illevlrengfsvtgvDlspeaveiaekakkaqkdqfdeq 74
                      +g  +Ld+G G+G  l++ +r+++   tgvD+s           ++q+  ++++
       CTQ26595.1 36 APGTTILDLGSGSGeMLCSWARDHQIVGTGVDMSLL---------FSQQAAARAE 81
                     456699********5579999************953.........3333333222 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   2.1e-05     0.028       1      98 [.      42     136 ..      42     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.1e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L++G+G+G++l  ++++ ++i  tgvD s  + ++a+++  + +    ++v++ ++d++    ++  D+  + ++      ++ +++ +++ L 
       CTQ26595.1  42 LDLGSGSGEMLCSWARD-HQIVGTGVDMSLLFSQQAAARAEELG--VSDRVTFVHQDASGYVASQPCDVAACVGATWIGGGVAGTIELLKQSLI 132
                      8***************9.999999*********88888877777..577999999998877777899998888877666777777777777777 PP

  Methyltransf_12  95 pgGr 98 
                      pgG+
       CTQ26595.1 133 PGGM 136
                      7776 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.6e-05     0.049       3     102 ..      44     138 ..      42     140 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.6e-05
  Methyltransf_24   3 iGvysGvstlwllralrrngagrlvavdhdpg.aeeaaalareaglddrvrlikadseealaslaagsiDllfiDgghaa.eavledleallpr 94 
                      +G+ sG   +   + +r+++    + vd     +++aaa a+e+g++drv+++++d++ ++as     +D++ + g       v+  +e+l + 
       CTQ26595.1  44 LGSGSGEMLC---SWARDHQI-VGTGVDMSLLfSQQAAARAEELGVSDRVTFVHQDASGYVASQP---CDVAACVGATWIgGGVAGTIELLKQS 130
                      5666666444...44455554.455666644455689999*******************988766...66666655433225688888899999 PP

  Methyltransf_24  95 lapggvvl 102
                      l pgg++l
       CTQ26595.1 131 LIPGGMLL 138
                      99998887 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.9e-05     0.054      25      94 ..      37     101 ..      26     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.9e-05
  Methyltransf_32  25 galtvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeats 94 
                      + +t++D+G+G g +    a    ++++  +g+d++   +++a +rae+lg  +++r+ f +++ +++ +
       CTQ26595.1  37 PGTTILDLGSGSGEMLCSWAR---DHQIVGTGVDMSLLFSQQAAARAEELG--VSDRVTFVHQDASGYVA 101
                      5689*********87777777...7899999********************..999*9999998877654 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.4e-05     0.075      18     102 ..      14      97 ..       2     112 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.4e-05
       GCD14  18 phrtqilytaD.isliimkLelkpGsvvvesGtGsgslshaiart..vaPtGhlftfefheqraekareefrehelsqlvtvthrDvc 102
                 +hr    +t++  +++   L++ pG+ +++ G Gsg +  + ar   +  tG   ++ f +q a +a    +e ++s+ vt  h+D+ 
  CTQ26595.1  14 EHRIHNPFTPEkYATLGRALRMAPGTTILDLGSGSGEMLCSWARDhqIVGTGVDMSLLFSQQAAARA----EELGVSDRVTFVHQDAS 97 
                 5777777777536889999*******************99999962266677777777776665555....56788888888888864 PP

>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.16      32      88 ..      27      82 ..      17      90 .. 0.83
   2 ?   -2.6   0.0       2.5   3.4e+03     164     195 ..     205     236 ..     175     239 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE--HHHHHHHHHHHHH CS
        DOT1 32 sevldkvnlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekqkee 88
                +++   + + +  + +DLGSG G++ +  a + ++   +Gv+++   s+ a +++ee
  CTQ26595.1 27 ATLGRALRMAPGTTILDLGSGSGEMLCSWARDHQIV-GTGVDMSLLFSQQAAARAEE 82
                5666778999********************999998.89999988888777776665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.5
                 T----SSSTT-GGGGEEEEEEE--TT-BTTBS CS
        DOT1 164 kykinsrnledivnilkveelkllegsVSWTs 195
                 +  ++++  +d+   ++ +  + + + V WT 
  CTQ26595.1 205 RRWLEANPHDDFAPEVRQQLTTAPLHHVTWTR 236
                 44445556666666666777777777788875 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.16       2      70 ..      39     108 ..      38     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
  Methyltransf_15   2 rvilDlfsGaGGnviqfalvfekv.iaieinleklacaqhNaevYgvsdkitlvlgdvfellaklkleki 70 
                      ++ilDl sG+G      a+ ++ v  +++++l   ++a+  ae  gvsd++t+v+ d    +a+   +++
       CTQ26595.1  39 TTILDLGSGSGEMLCSWARDHQIVgTGVDMSLLFSQQAAARAEELGVSDRVTFVHQDASGYVASQPCDVA 108
                      679****************9876634678888888899999999*************9988887655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1851.65
//
Query:       CTQ26596.1  [L=217]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-12   45.0   0.0    1.4e-11   44.5   0.0    1.3  1  GST_C     Glutathione S-transferase, C-terminal domain
    1.2e-10   41.5   0.0    2.3e-10   40.7   0.0    1.5  1  GST_N     Glutathione S-transferase, N-terminal domain
    3.4e-10   39.8   0.8    8.9e-10   38.5   0.8    1.7  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    1.6e-09   38.1   0.0    3.1e-09   37.1   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    1.6e-08   34.7   0.0    2.7e-08   34.0   0.0    1.4  1  GST_N_2   Glutathione S-transferase, N-terminal domain
      7e-08   32.6   0.0    1.1e-07   32.0   0.0    1.2  1  GST_C_3   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   4.6e-15   1.4e-11      16      93 .]     121     197 ..     101     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 4.6e-15
                 TH.HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C  16 ae.ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerimarp 93 
                 ++ e++ ++ ++a +++   l+++e++l+++ ylvGd +tlADi +  +l +++ +++       p+l a++ r+ arp
  CTQ26596.1 121 PAaERDPQAIAAAVTALEQKLAIAEARLAGSRYLVGDTFTLADIQFGHVLYRYFAIDITR--RPLPHLAAYYARLTARP 197
                 3358899999*********************************************99998..6***************9 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   7.7e-14   2.3e-10       3      75 ..       2      75 ..       1      76 [. 0.95

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 7.7e-14
                EEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET.TEEEESHHHHHHHHH CS
       GST_N  3 ltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn.gkkltESraIleYia 75
                lt ++  +s+++ ++++ + ++g++y   ++   +g ++ + +++lnp+  vP+L+d+ + +l+E++aIl+Y+a
  CTQ26596.1  2 LTIWGRKTSSNVQALMWCIGELGLDYLRFDVGHRYGGTDGEAFYQLNPNRTVPVLQDGdNPPLWETGAILRYLA 75
                6889999999***************************999******************8899***********8 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.8     3e-13   8.9e-10       1      69 []     127     192 ..     127     192 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 3e-13
                 HHHHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHHHH CS
     GST_C_2   1 eaaveraleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdireaypnlraWler 69 
                 ++a+++a+++l+++l+  ea+La+s++l Gd++tlaDi +  +l+r  a++     r  +p+l+a+++r
  CTQ26596.1 127 PQAIAAAVTALEQKLAIAEARLAGSRYLVGDTFTLADIQFGHVLYRYFAID---ITRRPLPHLAAYYAR 192
                 5899**********************************************9...67899********98 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0     1e-12   3.1e-09       5      73 ..       8      80 ..       5      82 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1e-12
                TTSHHHHHHHHHHHHHT--EEEE--..-.TTTTHHHHHHH-TT--SSEEETT.S-EEESHHHHHHHHHHHH-G CS
     GST_N_3  5 paSpyarrvrlaLnekglpvevvev..t.pgehdeellaknplgkvPvLedd.gealtdSlaIidyLeelypg 73
                ++S +++   +++ e+gl++   +v    +g   e++ + np+++vPvL+d+ +  l+++ aI++yL ++y++
  CTQ26596.1  8 KTSSNVQALMWCIGELGLDYLRFDVghRyGGTDGEAFYQLNPNRTVPVLQDGdNPPLWETGAILRYLASRYAD 80
                68999*************976534311325566999***************8799***************986 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0     9e-12   2.7e-08       8      69 ..      16      76 ..       9      77 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 9e-12
                HHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHHH CS
     GST_N_2  8 vlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlrylet 69
                 ++++ ++gl++    v + + g +++e f +lnp+ tVPvL+d d+ +++e+ +Ilryl++
  CTQ26596.1 16 LMWCIGELGLDYLRFDVGH-RYGGTDGEAFYQLNPNRTVPVLQDGDNPPLWETGAILRYLAS 76
                5677778888887666634.4566889*****************9999************87 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   3.6e-11   1.1e-07      27      93 ..     135     200 ..     113     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 3.6e-11
                 HHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHHTCC.CC-HHHHHHHHHHHTSHHHH CS
     GST_C_3  27 erlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleeaeal.kkfpklkalyervearpkik 93 
                 + l++ l+  e  l+  g+ ylvgd++T+AD+ + +vl  +  ++++ ++ p+l+a+y+r+ arp+  
  CTQ26596.1 135 TALEQKLAIAEARLA--GSRYLVGDTFTLADIQFGHVLYRYFAIDITrRPLPHLAAYYARLTARPAFR 200
                 567778888888888..999*******************9999965669****************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1678.12
//
Query:       CTQ26597.1  [L=420]
Description: PTS system, galactitol-specific IIC component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-65  221.3  34.2    2.7e-65  221.0  34.2    1.1  1  EIIC-GAT  PTS system sugar-specific permease component
  ------ inclusion threshold ------
       0.35   11.0   1.2        2.8    8.1   1.2    2.6  1  CbtB      Probable cobalt transporter subunit (CbtB)


Domain annotation for each model (and alignments):
>> EIIC-GAT  PTS system sugar-specific permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.0  34.2     3e-69   2.7e-65       2     387 ..       7     380 ..       6     390 .. 0.93

  Alignments for each domain:
  == domain 1  score: 221.0 bits;  conditional E-value: 3e-69
    EIIC-GAT   2 ilg.gpaillglivligllllkkklskaikgtlkaiiGflilslgagllvsslkpvaeafseafglk...idvvwpneaivalassqelgsevalilll 96 
                 i++ g+++++++i +i++l++++k+++a+k+++ ++iGf +++l++gll ++l+p+++a++e++gl+   +d++wp+++ ++++s+       +l +++
  CTQ26597.1   7 IISlGASVMMPVIFFIIALCFGVKIGTAFKAGMLVGIGFEGVGLVIGLLLTNLGPASQAMVERIGLQltvVDTGWPTASTIGWGSP-L-----MLPVVV 99 
                 78889********************************************************************************8.4.....666666 PP

    EIIC-GAT  97 gl.ivniilarfkktttlky.ifltghvmlqqalvlavvlyvlgfgnvalviigslllglywlvlpaltqkftrkitgndgvalghqqtlgya.laalv 192
                 g+ ++n+ ++++k t+t+++ if+++ +++++++v+a +      gn++l +  ++ + +++l++++lt+++ +k ++ +g++++h + ++y+ ++++ 
  CTQ26597.1 100 GFiVINLAMLLLKLTKTVNIdIFNYWIFLIMGSVVYAGT------GNYWLSVGITFAIFVLTLLAADLTAPYLQKNYNLKGISFPHLTCIAYVpFGIAC 192
                 55168**********************************......************************************************999999 PP

    EIIC-GAT 193 gklfgkkeksteki.....klpkklgflrdnivagailmlilfllaaliagkelsggknfvvqiltqaltfaaglviilkgvrmfveelvpafkgisek 286
                 + ++ +k   ++ki     +++kk+g++++++++g++l+l+l +la         g +  v  ++++a++++a++++++k++ ++v++l  + ++++ k
  CTQ26597.1 193 NYII-DKIPLINKInfdpeSINKKFGVFGEPLTLGFVLGLLLAFLA---------GYD--VSAAVSLAIKVSAAMLLLPKMIEILVQGLLIVRDAAEAK 279
                 9999.667777777********************************.........458..9************************************** PP

    EIIC-GAT 287 lvpgavp......AlDvavvfgfapnavtiGfllsfigqllallilillgaaiilPg..vlplfflgatagvfanavggikgaiigsfisG....llil 373
                 l+ + +p      ++D a+++g +p ++++G+ll++++++l+          iilPg  vlp+++l+ +++  a+ +  +k +++++fi+G     +il
  CTQ26597.1 280 LKAK-FPgrdfyiGMDTALLIG-EPSVLATGLLLIPMAVVLS----------IILPGnrVLPFVDLASLMFLLAMVTPFCKRNMFRMFITGtlivTCIL 366
                 ****.99***************.*******************..........***************************************65555555 PP

    EIIC-GAT 374 flpalllpllgelg 387
                 ++ + + + +++ +
  CTQ26597.1 367 YVGTDISQEYTQAA 380
                 55555555455555 PP

>> CbtB  Probable cobalt transporter subunit (CbtB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.2   0.00031       2.8      13      35 ..     223     245 ..     221     249 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00031
        CbtB  13 lvaAllLGlllvylvgfsqaaal 35 
                 l+++++LGlll++l+g++ +aa+
  CTQ26597.1 223 LTLGFVLGLLLAFLAGYDVSAAV 245
                 67899************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3069.01
//
Query:       CTQ26598.1  [L=331]
Description: putative oxidoreductase protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-58  195.1   0.0    8.4e-58  194.7   0.0    1.2  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      5e-18   65.0   0.0    1.5e-17   63.5   0.0    1.8  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
     0.0015   18.7   0.4       0.39   10.9   0.1    2.3  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
     0.0083   16.2   0.0       0.02   15.0   0.0    1.6  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
  ------ inclusion threshold ------
      0.094   12.7   0.0       0.17   11.9   0.0    1.3  1  NTP_transf_8   Nucleotidyltransferase


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.7   0.0   2.3e-61   8.4e-58       1     178 []     133     308 ..     133     308 .. 0.95

  Alignments for each domain:
  == domain 1  score: 194.7 bits;  conditional E-value: 2.3e-61
                   HHHHHHHHTTHHHHHHHHHTTCC..HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEE CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregew..ksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDiv 95 
                   ++++la +r++a+ ++++r++ w  +s+++  + el gk vG++GlG+I+q va  l++fg ++i+yd++    e   +   +++sl+el++++D++
    CTQ26598.1 133 VGMILAEMRNIARSHDALRDKYWrkDSPNHQAIPELGGKVVGLVGLGHIAQLVAGFLSGFGTEIIFYDKYVAGHE---R-YEKVDSLDELVQRADVI 225
                   689********************88888899999************************************87443...2.33689************ PP

                   EE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  96 slhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   slh+ ltpet++lina+++a+mk++ai++NtaR gl++e+ +++aL+sg+i gaalD+f+ eplp+ds++++l+nv++tPHia
    CTQ26598.1 226 SLHARLTPETENLINAHHFALMKRSAIIVNTARSGLINEKEMIDALRSGQIMGAALDTFDDEPLPDDSEFYTLNNVTITPHIA 308
                   **********************************************************************************8 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   4.1e-21   1.5e-17      14     103 ..      42     295 ..       9     322 .. 0.78

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 4.1e-21
                 HHHHTTEEEEEES...CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH....... CS
                 xxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
  2-Hacid_dh  14 llkeegvevevkd...ellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt....... 102
                  l+e+++ ve +      l e ll+   d+d+li+     v+ +v+++lpkLk+++    Gv+nv+l+ a++rG+ V+n+pg +++svAE+t       
  CTQ26598.1  42 KLQEDNLRVEQEGaeaVALPEALLQGTDDIDILITQFAP-VNTAVFDKLPKLKYVGVLRGGVENVNLQVANARGVEVMNTPGRNARSVAEFTvgmilae 139
                 4444333333333767667789*************9998.****************************************************9999999 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  CTQ26598.1 140 mrniarshdalrdkywrkdspnhqaipelggkvvglvglghiaqlvagflsgfgteiifydkyvagheryekvdsldelvqradvislharltpetenl 238
                 999999999999999999999999999999999999999999999998888888888888888888888888888888888888777777777777777 PP

                 ........................................................T CS
                 ........................................................x RF
  2-Hacid_dh 103 ........................................................a 103
                                                                         +
  CTQ26598.1 239 inahhfalmkrsaiivntarsglinekemidalrsgqimgaaldtfddeplpddseF 295
                 776666666666666666666666666666666666666666666666666665554 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0034        12      16      80 ..      21      92 ..      11     122 .. 0.86
   2 !   10.9   0.1   0.00011      0.39       2     106 ..     173     273 ..     172     280 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0034
                   HHHHHTT-EEEEE-SSHHHHHHHHHTT.......EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC- CS
  NAD_binding_2 16 lnllkagykvavynrtkekveelvaeg.......akaaesieelvasldvvitmvkagkavdevieglleal 80
                   + l ++g++v v + ++ +ve+l +++       a+a++ +e+l+++ d + +++++ ++v++ +++ l++l
     CTQ26598.1 21 KALRDNGIEVEVREWSHGSVEKLQEDNlrveqegAEAVALPEALLQGTDDIDILITQFAPVNTAVFDKLPKL 92
                   5678999***************99998888888899999999999999*************99999866655 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00011
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstssped 96 
                    +g++GlG + +  a  l   g ++++y+   +       e+ + ++s+ elv+++dv+ +  + +++++++i+   ++ +k+++i+++++ s   +
     CTQ26598.1 173 VGLVGLGHIAQLVAGFLSGFGTEIIFYDKYVAGH-----ERYEKVDSLDELVQRADVISLHARLTPETENLINAhHFALMKRSAIIVNTARSGLIN 263
                    799*******9999999**********9774443.....447789****************************999999*********99999988 PP

                    HHHHHHHHHH CS
  NAD_binding_2  97 trelakelke 106
                     +e+ ++l++
     CTQ26598.1 264 EKEMIDALRS 273
                    8888887765 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.5e-06      0.02      21     111 ..     168     258 ..     158     279 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.5e-06
                    -TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-E.E--HHHCTTT-SEEEE....-SSSSSSB-HHHHCCS-TTEEEEE-SS CS
  AdoHcyase_NAD  21 laGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfe.vvtleevvkkadivvt....ttGnkdiitlehlkkmkddaivcniGh 111
                    l+Gkv+ ++G G + +  a  l g+G+ +i    d      a  e +e v  l+e+v++ad++      t  ++++i+++h++ mk +ai+ n   
     CTQ26598.1 168 LGGKVVGLVGLGHIAQLVAGFLSGFGTEIIFY--D---KYVAGHERYEkVDSLDELVQRADVISLharlTPETENLINAHHFALMKRSAIIVNTAR 258
                    79************************877764..4...44566677743999*********9864222255789*****************99765 PP

>> NTP_transf_8  Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.7e-05      0.17      33      76 ..      54      99 ..      51     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.7e-05
  NTP_transf_8 33 gllgvrlpaevla.TgDiDllvaqrrklslaveds.veeellgvLk 76
                  g+ +v lp+++l+ T+DiD+l+ q+++++ av d+ ++ + +gvL+
    CTQ26598.1 54 GAEAVALPEALLQgTDDIDILITQFAPVNTAVFDKlPKLKYVGVLR 99
                  566788887766559********************88888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2483.37
//
Query:       CTQ26599.1  [L=253]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-54  184.3   0.4      3e-54  184.1   0.4    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    9.5e-51  172.0   0.7    1.1e-50  171.8   0.7    1.0  1  adh_short     short chain dehydrogenase
    2.4e-14   53.7   0.6    3.4e-14   53.2   0.6    1.2  1  KR            KR domain
      1e-05   25.0   0.0    1.4e-05   24.6   0.0    1.3  1  DUF1776       Fungal family of unknown function (DUF1776)
  ------ inclusion threshold ------
      0.061   12.8   0.1       0.13   11.7   0.0    1.5  2  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.1   0.4   8.3e-58     3e-54       1     233 [.      14     250 ..      14     251 .. 0.93

  Alignments for each domain:
  == domain 1  score: 184.1 bits;  conditional E-value: 8.3e-58
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93 
                   G a g+Gr+ + +la+eG ++++t+++ee+  ++ +e+++++ + e+  +++D +de++ e+l++++ +++gk Dilvnnagi  +  g ++e+s +
    CTQ26599.1  14 GGATGLGREFVLSLAKEGVNICFTYMREEEhpERLIETVKASANVEIiaVKTDLSDEQSRENLFATCIDRLGKADILVNNAGIWLS--GYVTEISPQ 108
                   5689*************************99888889999999999447************************************9..********* PP

                   HHHHHHHHHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSB.STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHH CS
  adh_short_C2  94 efdraldvnlyslfllakaalp.lmkeg..gsivnlssvgaerv.vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfd 186
                   ++d +++vnl+++f+l++ +++ ++++   gsi+n++s +a  + ++++++y+a+Ka+l+a++ +lA+e+++++i vN ++ g+++T + ++    +
    CTQ26599.1 109 DWDLVMNVNLKAIFHLSQLFVNhCLQHDqmGSILNITSQAAFHGsTTGHAHYAASKAGLVAFAISLAREVAKQKINVNNIAVGIMDTAMIRKN--IE 203
                   **********************85555569*********99887477788***************************************6543..35 PP

                   HHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 187 elleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   +  ++  +r+p+gr+++p+e+a++ +f++s+++sy+tG+tl v gG+
    CTQ26599.1 204 QNPDYYVSRIPVGRVAQPQEIADIGVFMVSPKTSYMTGATLDVTGGM 250
                   7778999***************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.8   0.7   3.1e-54   1.1e-50       2     193 ..       9     204 ..       8     206 .. 0.95

  Alignments for each domain:
  == domain 1  score: 171.8 bits;  conditional E-value: 3.1e-54
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 +++vtG++ G+Gr+++  lakeG+++ + + r+ee  e++++ +k+  + +++a+++D++d+++ e+l+++++++lgk d+LvnNAGi  sg + e+s 
  CTQ26599.1   9 TAIVTGGATGLGREFVLSLAKEGVNICFtYMREEEHPERLIETVKASaNVEIIAVKTDLSDEQSRENLFATCIDRLGKADILVNNAGIWLSGYVTEISP 107
                 79*************************999****************99****************************************99********* PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-T.TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short  99 eewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpva.gvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelrek 193
                 ++w+ v++vNl+++f+l+++++++ l   + G+I n++S+a++ ++  g a Y+AsKa++++++ sla+e+a+++i+vn++a G++dT+m ++  e+
  CTQ26599.1 108 QDWDLVMNVNLKAIFHLSQLFVNHCLqHDQMGSILNITSQAAFHGSTtGHAHYAASKAGLVAFAISLAREVAKQKINVNNIAVGIMDTAMIRKNIEQ 204
                 ************************6659999***********8887516789**************************************9887665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.6   9.4e-18   3.4e-14       3     166 ..      10     177 ..       9     199 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 9.4e-18
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                  ++tGG+ gLG+e++  la++g +      R+   +e+ ++li++++a+ ++e+ +v+ D+sd+++ e+l++++ ++ ++    ++ Ag+   + ++e 
  CTQ26599.1  10 AIVTGGATGLGREFVLSLAKEGVNICFTYMRE---EEHPERLIETVKASaNVEIIAVKTDLSDEQSRENLFATCIDRLGKADILVNNAGIWLSGYVTEI 105
                 68********************9877777777...56677799999997799*********************************************** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--.TT-HHHHHHHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled.....esldffvlfSSiagllgs.agqanYaaaNaflDalaeyrrsq 166
                 + +d++ v++  +k++ +L +l+ +     +++  ++ ++S a++ gs +g+a+Yaa  a l a+a + +++
  CTQ26599.1 106 SPQDWDLVMNVNLKAIFHLSQLFVNhclqhDQMGSILNITSQAAFHGStTGHAHYAASKAGLVAFAISLARE 177
                 ********************998876766688888999*******998358999**9988777766544443 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   3.9e-09   1.4e-05     103     204 ..      97     197 ..      40     216 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.9e-09
     DUF1776 103 yptgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnld 201
                 + +g +++i+++ w  ++n +l + + ++q ++++  ++  q   i+ ++     + +   ha  a     l a++ +L+re+++++i+v +i +G++d
  CTQ26599.1  97 WLSGYVTEISPQDWDLVMNVNLKAIFHLSQLFVNHCLQHD-QMGSILNITSQAAFHGSTTGHAHYAASKAGLVAFAISLAREVAKQKINVNNIAVGIMD 194
                 47899******************************99855.899999999999999******************************************9 PP

     DUF1776 202 lan 204
                  a 
  CTQ26599.1 195 TAM 197
                 885 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.6e-05      0.13       2      62 ..      11      79 ..      10      96 .. 0.92
   2 ?   -2.7   0.0      0.93   3.3e+03      44      67 ..     186     208 ..     156     212 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.6e-05
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfke 62
                +VtG++  +G+ +v  l+++g+++     +++++++ ++e++          v+ dl d+++ e+lf++
  CTQ26599.1 11 IVTGGATGLGREFVLSLAKEGVNICFTYMREEEHPERLIETVkasanveiIAVKTDLSDEQSRENLFAT 79
                8*****************************999999999999******9999**********9999984 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.93
                 EEEE--TT-HHHHHHHHHHHT-SE CS
   Epimerase  44 elveldltdrsalerlfkeeqpda 67 
                 + + + ++d + +++ +++ +pd+
  CTQ26599.1 186 NNIAVGIMDTAMIRKNIEQ-NPDY 208
                 5556666666666666665.5665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2081.10
//
Query:       CTQ26600.1  [L=512]
Description: putative L-xylulose/3-keto-L-gulonate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-64  216.8   0.0    1.3e-63  214.8   0.0    1.9  2  FGGY_N       FGGY family of carbohydrate kinases, N-terminal 
    1.6e-29  103.0   0.0    2.4e-29  102.5   0.0    1.3  1  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
    7.2e-09   35.5   0.2    1.1e-08   34.9   0.2    1.3  1  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
  ------ inclusion threshold ------
      0.081   12.6   0.3       0.13   11.9   0.3    1.3  1  Hydant_A_N   Hydantoinase/oxoprolinase N-terminal region


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.8   0.0     3e-67   1.3e-63       1     243 [.       5     250 ..       5     252 .. 0.98
   2 ?   -0.8   0.0      0.21   9.4e+02     126     152 ..     299     325 ..     267     348 .. 0.67

  Alignments for each domain:
  == domain 1  score: 214.8 bits;  conditional E-value: 3e-67
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE-TT CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynailwk 99 
                 +++g+D G+t tka+++d+kg+v+a a++  ++ +p+e   e++++e+w+a  e+i+k++eq+gi+++qik+++++g ++gl l+D++++p++n i++ 
  CTQ26600.1   5 YVMGIDNGGTVTKAAIYDRKGQVLAIASKSTQMLTPREFHTERSIDELWAANVEVIKKAIEQSGIDASQIKGVAVTGHGNGLYLVDEEGHPVRNGIIST 103
                 799************************************************************************************************ PP

                 --TTHHHHHHHHH.TTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-HHHHHHTT CS
      FGGY_N 100 drrtaeiveklke.egnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnikklewdeellailg 197
                 d r++e ve++++     + + +kt + +++g ++  l+Wlk+ epe+++k++ + +++d++++ Ltg+   + t++s+++l+n+++ ++d+ella+ g
  CTQ26600.1 104 DSRAKEYVERWQRsPEFLTDILPKTMQSIWAGQPVALLAWLKDFEPETLQKARYIFMVKDLIRFYLTGEAFLELTDISGTNLINVRDCKYDDELLAWWG 202
                 *************99999********************************************************************************* PP

                 --GG..GS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHH CS
      FGGY_N 198 ipee..lLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaa 243
                 ++e   +LP++++s+e +g++++ +a  +Gl +g+pv+gg +D +a+ 
  CTQ26600.1 203 LDELrdKLPPIKRSTECCGKITDDVARLTGLCAGTPVSGGVFDISASS 250
                 *98667*************************************98875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.21
                 -SSTTSHHHHHHHHHHHSCCHHCCHCE CS
      FGGY_N 126 vlstgftlsklkWlkenepevfekiek 152
                 +  + +++s l+W+ +n  e+ +k+ +
  CTQ26600.1 299 TEASPTSASNLEWFINNFMESDRKTSA 325
                 334567899999999998888887765 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   5.4e-33   2.4e-29       2     197 ..     262     454 ..     261     455 .. 0.85

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 5.4e-33
      FGGY_C   2 kvslGTssflllvgtkpvisehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdagev.....eeslaelaaaeavadaggvvfvpaf 95 
                 +++ GT+s+  +v+++pvi+++ ++t ++    ++ +++  +     s ++w+++n    e+ r+++ +     + +l ++  +++ +d  +++f p +
  CTQ26600.1 262 AIVTGTWSINEYVTDHPVIDKDLFMTSIY--PIEGKWLITEASPTSASNLEWFINNF--MESDRKTSAEqgssvY-DLCNKLVSSTTPDESHLLFFPFV 355
                 799**************************..56999***99999999999******5..3333333333554532.22223334666777777777777 PP

      FGGY_C  96 sglrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilA 194
                  g  +    pda++ ++g++s +++ah+ rA++e+va++  +++e l +  +k  +++++ GG +++++++q++Adi++ ++e+++ +e + lG A+ A
  CTQ26600.1 356 FGSNTI---PDASAGFIGVNSFHKKAHFLRAIYEGVAFSHLYHTERLRNINPKLSRTIRIAGGVTNSPVWLQIFADIFQATLEIVDVKEHGTLGTAMTA 451
                 776665...9****************************************9999********************************************* PP

      FGGY_C 195 ava 197
                 av 
  CTQ26600.1 452 AVM 454
                 985 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.2   2.5e-12   1.1e-08       2      83 ..       8      93 ..       7     115 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 2.5e-12
                 EEEE-SSEEEEEEEETTTEEEEEEEE--TTS-HHH................HHHHHHHHHHT--GGGECEE..EEESTTCCCTCTTBSE CS
  BcrAD_BadFG  2 GiDgGsTttkavlmdekgevlgrgitnsanlesvrfeaaekvl.......eealtealerageeeadieetylvgtgyGratlpekfek 83
                 GiD G+T tka+++d+kg+vl+ + + ++ l+ +r+   e+++       +e++++a+e++g ++++i+ ++++g g G+  ++e  e 
   CTQ26600.1  8 GIDNGGTVTKAAIYDRKGQVLAIASKSTQMLT-PREFHTERSIdelwaanVEVIKKAIEQSGIDASQIKGVAVTGHGNGLYLVDE--EG 93
                 *********************99987774444.3333444444222222279****************************99994..33 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3     3e-05      0.13       2      61 ..       7      78 ..       6      84 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
  Hydant_A_N  2 igIDvGGTfTDavaldekeeevavlKllst............pdavaegirealeevleesiprtskidvvr 61
                +gID GGT T a ++d k +++a++   ++             d+ + + +e++++++e+s+++ s+i+ v 
  CTQ26600.1  7 MGIDNGGTVTKAAIYDRKGQVLAIASKSTQmltprefhtersIDELWAANVEVIKKAIEQSGIDASQIKGVA 78
                79**************99655555555555888899998888888899999999999999999999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3730.29
//
Query:       CTQ26601.1  [L=183]
Description: Transcriptional antiterminator of glycerol uptake operon [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-48  164.3   0.0    1.9e-48  164.2   0.0    1.0  1  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator


Domain annotation for each model (and alignments):
>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.2   0.0     1e-52   1.9e-48       1     173 []       7     183 .]       7     183 .] 0.97

  Alignments for each domain:
  == domain 1  score: 164.2 bits;  conditional E-value: 1e-52
                   EEEEESSSSSGCC-...-SSEEEE--EETTTHHHHHHHHHHTT-EEEEEGGGEET--SSHHHHHHHHH.TT-SEEEES-HHHHHHHHHTT--EEEEE CS
  G3P_antiterm   1 viaavkdeedlekalesevevvfllegdilnlkeiveklkkagkkvfvhiDlieGlskdeaaveflkkeikvdGiistksslikkakklglltiqrl 97 
                   +i+++++ + +ekal+ ++e+v+l e++i nl++++ k++++gkkv+vh++l+ G++ d+a+++ lk+++kvdG+is++ s +++akk+gllt+ r+
    CTQ26601.1   7 IIPSIRKYKYFEKALSCQSEYVLLSEANIGNLQSLIGKCHQSGKKVLVHLELLGGFKPDQAGINLLKNYYKVDGVISSNLSALRYAKKEGLLTVYRV 103
                   8************************************************************************************************ PP

                   E--SHHHHHHHHHHHHHHT-SEEEEESGGG.HHHHCTSTTS......EEEEESS--SHHHHHHHCTT.SSEEEE--HHHH CS
  G3P_antiterm  98 fliDssalekalkqiekskpdavevlPglv.pkvikeikkel...kipiiaGGLietkedveealkaGaiavstsnkelW 173
                    liDs++l+++l+ +++s pda+e+lP+ +  ++++ i+++l   ++ +iaGG+++ k  v+++++aG+ +++ts++ lW
    CTQ26601.1 104 LLIDSRSLDQSLDIVKHSPPDAIEILPAEYaCQCLELISRNLkgfDVVFIAGGFVKRKYLVDKIFHAGFKGITTSEPGLW 183
                   ***************************98878888888777544499********************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1457.60
//
Query:       CTQ26602.1  [L=263]
Description: putative phospho-2-dehydro-3-deoxyheptonate aldolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-20   71.4   0.0      1e-19   71.1   0.0    1.1  1  DeoC      DeoC/LacD family aldolase


Domain annotation for each model (and alignments):
>> DeoC  DeoC/LacD family aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   5.8e-24     1e-19      24     234 ..      34     232 ..      18     233 .. 0.85

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 5.8e-24
                 HHHHHHHHHHHHGGGSSEEEEETTTHHHHHHCSCTTSEEEEETECSSCCTTSTTEEEETTCHHHHHHHTT-SEEEEEEEEHTTTTCHHHHHHHHHHHHH CS
        DeoC  24 ledlkalvkealtpgasavlldpgviasaskeyakdiallvkldkgtyllkskqrdvdevasveeakalGAdavkvvvyyradgseeeqqklaeikrvk 122
                 + ++ +   ++++ g ++ l+++g++  ++  ++ ++++++++d++  + +++  d ++v sve a++  A+ v  + +    g+ +e++ + +  + +
  CTQ26602.1  34 IDNTINQLPALVEHGLDCALVTYGMLKNYREALN-SVPVVLRVDSTVSIFDNTVPDTTPVFSVEDALKVAAEGVVCMTFP---GAFNEEKTHIMAMQLA 128
                 5556666667778899******************.9********99999999988888******************9999...**************** PP

                 HHHHHHTEEEEEEEEE-CTTB.SSTTCHHHHHHHHHHHHTCCT-SEEEE--SSCC.B.HHHHHHHHHHHHHCHSSTEEEEETTS..SHHHHHHHHHHHH CS
        DeoC 123 eacheeglplilelylrdeai.kdekvdpdlvaeAarvsaelGaDiiKvevpkevvnateedaevfkdvikaapvpgvvlsGGv..seedfletvedAv 218
                 +a++ +  pli+e ++++  + +d++++p  +a  ar+++elGaD+iK+ ++       +ed    +  ++aa vp v+  GG+  +     + v+  +
  CTQ26602.1 129 QAADRWNVPLIVESLPYGYPVtSDDSNNPAIIAASARAAVELGADVIKTRFT-----GSPED----RLIVEAAGVP-VLALGGPktGIDGYFKFVQHCM 217
                 *************66665554045559*************************.....33444....45667788**.9999**9665566667777777 PP

                 HHHTHCEEEESHHHHT CS
        DeoC 219 keagasGvlsGRaifq 234
                  + ga Gv++GR+i q
  CTQ26602.1 218 -QMGAKGVAVGRNITQ 232
                 .************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2349.07
//
Query:       CTQ26603.1  [L=56]
Description: hypothetical protein CH1034_130054 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 454.11
//
Query:       CTQ26604.1  [L=83]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-09   38.8   0.3    1.5e-09   38.3   0.3    1.2  1  Zn_ribbon_2     Putative zinc ribbon domain
     0.0069   16.6   0.6      0.011   16.0   0.6    1.3  1  PknG_rubred     Protein kinase G rubredoxin domain
     0.0074   16.3   3.7      0.012   15.6   3.7    1.4  1  DZR             Double zinc ribbon
  ------ inclusion threshold ------
      0.013   15.2   2.0        1.3    8.9   0.1    2.2  2  zinc_ribbon_2   zinc-ribbon domain
      0.056   13.2   0.1      0.057   13.2   0.1    1.1  1  TENA_THI-4      TENA/THI-4/PQQC family
      0.058   13.4   0.6      0.074   13.0   0.6    1.2  1  zinc-ribbons_6  zinc-ribbons
       0.13   12.2   3.4       0.16   11.9   0.1    2.1  2  Nudix_N_2       Nudix N-terminal


Domain annotation for each model (and alignments):
>> Zn_ribbon_2  Putative zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.3     6e-13   1.5e-09       1      81 [.       7      77 ..       7      78 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 6e-13
  Zn_ribbon_2  1 iCqsCGmplkkeedlgteadgsksedYCkyCyk.dGeftepdltmeemiekcvkklaeenkelteeearkllkkllpkLkrW 81
                 +Cq+CGmp++ ++       +  s++YC yC + dG+ ++    +ee ++ ++ +l++ +k +   e rk +k++l  +++W
   CTQ26604.1  7 FCQACGMPMSAPDA------QGASDKYCAYCSDsDGNLKS----WEEAVSGLAAFLDAWQK-VGVAESRKRAKRYLTAMPAW 77
                 8********76664......457899******99***999....99999999999999975.88999999999999999999 PP

>> PknG_rubred  Protein kinase G rubredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.6   4.1e-06     0.011      91     122 ..       4      33 ..       1      37 [. 0.90

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.1e-06
                  GG-B-TTT--B-S---SS----SEEE-TTT-- CS
  PknG_rubred  91 skRfCwrCGrpvGRsekerkgaseGtCpkCgs 122
                    RfC  CG p+  s  + +gas+ +C++C++
   CTQ26604.1   4 HERFCQACGMPM--SAPDAQGASDKYCAYCSD 33 
                  68*********7..89999***********96 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   3.7   4.7e-06     0.012       9      36 ..       2      33 ..       1      40 [. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.7e-06
         DZR  9 ppdarfCseCgtklkavaa....edrCpsCge 36
                +++ rfC++Cg +++a+ a     + C  C+ 
  CTQ26604.1  2 TQHERFCQACGMPMSAPDAqgasDKYCAYCSD 33
                6889**********98888999999*****86 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00049       1.3      13      22 ..       5      14 ..       2      15 .. 0.85
   2 ?    6.0   0.2    0.0039       9.9      13      19 ..      25      31 ..      22      34 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00049
  zinc_ribbon_2 13 akFCpyCGtp 22
                   ++FC  CG p
     CTQ26604.1  5 ERFCQACGMP 14
                   79******87 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0039
  zinc_ribbon_2 13 akFCpyC 19
                   +k+C yC
     CTQ26604.1 25 DKYCAYC 31
                   89***** PP

>> TENA_THI-4  TENA/THI-4/PQQC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.2e-05     0.057      76     140 ..       1      63 [.       1      81 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHTT-HHHHHCTTT--HHHHHHHHHHHHH.HCHS-HHHHHHHHHHHHHHHHHHHHHHC CS
  TENA_THI-4  76 ielhlrlaealGlsreelsktkpspatkayvrylldl.arrgslaeavaallpclfvyqeiaerlk 140
                 + +h+r+++a G++ +   +   s     y++y  d  ++ +s+ eav  l ++l ++q +    +
  CTQ26604.1   1 MTQHERFCQACGMPMSAPDAQGAS---DKYCAYCSDSdGNLKSWEEAVSGLAAFLDAWQKVGVAES 63 
                 679***********9997666666...99*****************************99985544 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.6   2.9e-05     0.074      27      56 ..       3      32 ..       1      45 [. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.9e-05
                    EEEEE-SSS-S---EEEETTEEEE--TTTT CS
  zinc-ribbons_6 27 kkealCpeCeqelevlkaCgavdyfCnkcn 56
                    + e +C+ C+ +++   a ga d +C+ c 
      CTQ26604.1  3 QHERFCQACGMPMSAPDAQGASDKYCAYCS 32
                    67899*********************9996 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   6.3e-05      0.16       1      11 [.       6      16 ..       6      22 .. 0.89
   2 ?    0.8   0.5      0.19   4.8e+02       1       7 [.      26      32 ..      26      34 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.3e-05
                -B-TTT--B-E CS
   Nudix_N_2  1 kFCsqCGtpve 11
                +FC++CG p++
  CTQ26604.1  6 RFCQACGMPMS 16
                8*******986 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.19
                -B-TTT- CS
   Nudix_N_2  1 kFCsqCG 7 
                k+C  C 
  CTQ26604.1 26 KYCAYCS 32
                8999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 647.14
//
Query:       CTQ26605.1  [L=465]
Description: Dihydrolipoyl dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-71  239.7   1.2    5.2e-71  239.3   1.2    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    3.1e-32  111.1   0.1    6.7e-32  110.0   0.1    1.6  1  Pyr_redox_dim   Pyridine nucleotide-disulphide oxidoreductase
    1.2e-22   80.2   3.3    6.7e-20   71.4   0.1    3.4  3  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    7.5e-18   64.8   0.0    1.9e-17   63.5   0.0    1.6  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    3.7e-09   36.2  13.4    2.9e-06   26.6   0.8    4.7  5  FAD_binding_2   FAD binding domain
    9.7e-09   35.1   2.7    9.7e-09   35.1   2.7    1.7  2  FAD_oxidored    FAD dependent oxidoreductase
    1.7e-07   30.7   5.4      1e-05   24.8   3.2    2.8  2  GIDA            Glucose inhibited division protein A
      2e-07   31.0  12.8      0.014   15.0   0.0    3.9  4  DAO             FAD dependent oxidoreductase
    2.2e-07   30.0   6.0    0.00033   19.5   0.4    3.7  4  HI0933_like     HI0933-like protein
    9.1e-07   29.0   7.4     0.0019   18.4   1.0    3.5  3  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    1.8e-05   24.2   6.4    0.00071   18.9   0.5    3.2  3  FAD_binding_3   FAD binding domain
      2e-05   23.9   0.1    0.00078   18.7   0.0    2.4  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
     0.0011   18.8   0.0     0.0037   17.2   0.0    1.9  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0094   15.3   1.0      0.023   14.0   0.0    2.1  3  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
  ------ inclusion threshold ------
      0.013   14.6   1.4       0.31   10.0   0.1    2.2  2  Lycopene_cycl   Lycopene cyclase protein
      0.044   13.0   0.3        4.7    6.4   0.0    2.3  2  Hydantoinase_A  Hydantoinase/oxoprolinase
      0.052   14.0   0.2        0.7   10.4   0.0    2.5  2  XdhC_C          XdhC Rossmann domain
       0.11   11.7   0.3       0.27   10.5   0.1    1.7  2  Thi4            Thi4 family
       0.11   12.8   0.0       0.29   11.5   0.0    1.6  1  ANAPC4_WD40     Anaphase-promoting complex subunit 4 WD40 dom
       0.12   12.8   1.2        2.3    8.7   0.0    2.6  2  NAD_binding_7   Putative NAD(P)-binding
       0.14   11.4   5.3        5.9    6.1   0.0    2.9  3  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
       0.46   10.5   9.3        6.1    6.8   0.1    3.3  3  NAD_binding_9   FAD-NAD(P)-binding
       0.51    9.1   5.5       0.13   11.1   0.4    2.4  3  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.3   1.2   6.6e-74   5.2e-71       1     294 []       5     325 ..       5     325 .. 0.93

  Alignments for each domain:
  == domain 1  score: 239.3 bits;  conditional E-value: 6.6e-74
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH........................HHHHCHHHHCCCCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias........................evvkklnqgielll 71 
                  +dv++iGgGp+G+ aa++++q g++++lve   l+g cln+gc+++kall+ ae a++++                         v ++l++g+ +ll
   CTQ26605.1   5 YDVLIIGGGPGGYVAAIRAGQLGLRTVLVEkqhLGGICLNWGCIPTKALLHGAEVAHTIThasqlgisvgevnvdlqklvqfsrTVSQQLTAGVAYLL 102
                  69***************************999***************************9************************88999********* PP

                  CCTCEEEEESCEEEEETEEEC.....TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  72 geevvkidpgkkkvklekkke.....gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalakl 164
                  ++++v+++ g +++  + + +     g+ +++ +d+++lAtG++pr l  pG a+++ +    ++  eal+ kllp++++++G+G+iGvE+A+ +++l
   CTQ26605.1 103 KKNGVQVIDGTARLRGKGQITvedarGEARDYRADHVILATGARPRAL--PGIAPDGEHI---WTYFEALRPKLLPRSLLIIGSGAIGVEFASLYNDL 195
                  ***999997777777766655667779********************9..9998888655...9********************************** PP

                  T-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCE..EEESEEEE-S-EEES-HHCS.HCCT-EEEETTEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx..xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Pyr_redox_2 165 gkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngekle.vvledgee..idadlvvvavGvrpstelle.eklglelderggi 258
                  g++vtlve ++++l+  d e+saa+++ +ek+G++++++t v++++  ++ ++ + +++g e   d++ v++avGv+p+ e l+ e+lg+el +rg+i
   CTQ26605.1 196 GCKVTLVELASQILPVEDAEVSAAVRKSFEKRGIQIHTQTLVTQVQLTDTGVRcTLNDTGGEysQDVERVLLAVGVQPNIEDLGlEALGVEL-DRGFI 292
                  **********************************************9999788644444444589***************************.***** PP

                  E--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 259 vvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  ++d  +rtnv g+yaiGDva   g p la++A+ +G
   CTQ26605.1 293 KTDAACRTNVFGLYAIGDVA---GPPCLAHKASHEG 325
                  ********************...99*******9987 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   0.1   8.6e-35   6.7e-32       1     109 [.     346     454 ..     346     455 .. 0.99

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 8.6e-35
                    BEEEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTSB CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladti 96 
                    +p +++ +p+vas+Glte  A a g ++++gkf++++ng+ala++et+gfvK ++da+tg++lGah+vG +++e iq++ +a + ++t e l + i
     CTQ26605.1 346 VPGCTYARPQVASLGLTESTALARGRPVRIGKFSYQSNGKALASGETEGFVKTIFDAETGELLGAHMVGAQVTEQIQGFGIARHLEATDESLLSMI 441
                    799********************************************************************************************* PP

                    SSSSSTGGGGHCH CS
  Pyr_redox_dim  97 hihPtlsealkea 109
                    ++hPtlsea++e+
     CTQ26605.1 442 FAHPTLSEAMHES 454
                    **********986 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2     0.036        28       2      31 ..       7      36 ..       6      38 .. 0.93
   2 ?    2.2   0.0      0.36   2.8e+02      36      61 ..      88     113 ..      54     126 .. 0.65
   3 !   71.4   0.1   8.5e-23   6.7e-20       2      74 ..     176     248 ..     175     254 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.036
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                v+++GgG  g  +A  + +lg ++ +ve +
  CTQ26605.1  7 VLIIGGGPGGYVAAIRAGQLGLRTVLVEKQ 36
                89**********************999975 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.36
                 TTSSHHHHHHHHHHHHHTTEEEECSE CS
   Pyr_redox  36 rllDeeaskilqeklekngievllnt 61 
                 r   +++ + ++  l+kng++v+ +t
  CTQ26605.1  88 RTVSQQLTAGVAYLLKKNGVQVIDGT 113
                 4445666666788899******9887 PP

  == domain 3  score: 71.4 bits;  conditional E-value: 8.5e-23
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgve 74 
                 ++++G+G ig+E+A+ +++lg+kVt+ve ++++l+++D+e+s+++++++ek+gi+++++t v++++ ++ gv+
  CTQ26605.1 176 LLIIGSGAIGVEFASLYNDLGCKVTLVELASQILPVEDAEVSAAVRKSFEKRGIQIHTQTLVTQVQLTDTGVR 248
                 79****************************************************************9998854 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   2.4e-20   1.9e-17       1     305 []       8     309 ..       8     309 .. 0.79

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 2.4e-20
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgnignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelpi 98 
                  +IiG+GP G  aai + ++gl + + +Ek+++g    ++    t        ++ e+     i++ ++  +s+ e ++  ++++++ r+v ++    +
   CTQ26605.1   8 LIIGGGPGGYVAAIRAGQLGL-RTVLVEKQHLGGICLNWGCIPTK----ALLHGAEVAH--TITHASQLGISVGEVNVDLQKLVQFSRTVSQQLTAGV 98 
                  6********************.678**************764333....3345666654..6888888899999*****************9999888 PP

  Pyr_redox_3  99 kl...feeVesvkk.....edegfevetske...tyeAkkviiAtGefdkPnklnipGeeklvkhyskvk.efh.kyagqkvvViGgknSavDaAlel 183
                   +   ++ V+ ++       +++ +ve  ++   +y+A++vi+AtG   +P+    pG     +h  ++  +++ k+  + +++iG +  +v+ A   
   CTQ26605.1  99 AYllkKNGVQVIDGtarlrGKGQITVEDARGearDYRADHVILATGA--RPRA--LPGIAPDGEHIWTYFeALRpKLLPRSLLIIGSGAIGVEFASLY 192
                  75222556777764222224567888877765669***********9..8887..55655545554444303331455899***************** PP

  Pyr_redox_3 184 vrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvk..tedgkkvevkddvvlatGykpdlsflkkslf 279
                   + g++Vt+v   s+i   e   ++++++ +++ +e+    + i++++++ v++++ +++ ++ +   + g+  +  ++v+la+G +p+++ l  + +
   CTQ26605.1 193 NDLGCKVTLVELASQILPVE---DAEVSAAVRKSFEKR---G-IQIHTQTLVTQVQLTDTGVRCTlnDTGGEYSQDVERVLLAVGVQPNIEDLGLEAL 283
                  **************999976...678999999999873...4.9**********99888777665215566777778999999*********988777 PP

  Pyr_redox_3 280 eldedgrpvlteeteetnvpglflaG 305
                    + d+    t++ + tnv gl+ +G
   CTQ26605.1 284 GVELDRGFIKTDAACRTNVFGLYAIG 309
                  7777888889999**********999 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.8   3.8e-09   2.9e-06       1      35 [.       6      40 ..       6      47 .. 0.89
   2 ?    5.3   0.0     0.011       8.6     176     206 ..     120     150 ..      64     166 .. 0.76
   3 ?    0.3   0.1      0.37   2.9e+02       2      32 ..     176     206 ..     175     210 .. 0.91
   4 ?    1.6   0.1      0.14   1.1e+02     139     188 ..     212     258 ..     203     277 .. 0.74
   5 !    7.6   0.0    0.0023       1.8     376     403 ..     292     313 ..     289     323 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.8e-09
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefg 35
                   Dv++iG+G +G++AA++a + Gl++++vek +  g
     CTQ26605.1  6 DVLIIGGGPGGYVAAIRAGQLGLRTVLVEKQHLGG 40
                   9*****************************98644 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.011
                    EEEEEETTTTCEEEEEESEEEE-----GG.. CS
  FAD_binding_2 176 GavvenpesgrevrirakavvlatgGfgral 206
                    G +  +++ g+ + +ra++v+latg+ +ral
     CTQ26605.1 120 GQITVEDARGEARDYRADHVILATGARPRAL 150
                    4455557899999**************9833 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.37
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSS CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeq 32 
                    +++iGsG+ G   A   ++ G kv++ve ++
     CTQ26605.1 176 LLIIGSGAIGVEFASLYNDLGCKVTLVELAS 206
                    69************99***********9775 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.14
                    HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEE CS
  FAD_binding_2 139 tghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrev 188
                    +  ++ a++ +s++k+g++++++t ++++  +d +v+   ++  ++g+e 
     CTQ26605.1 212 EDAEVSAAVRKSFEKRGIQIHTQTLVTQVQLTDTGVRCT-LN--DTGGEY 258
                    56678899999******************9999888754.33..444444 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0023
                    EEBETTSBESTTEEESSBTEEE-STCEE CS
  FAD_binding_2 376 vetdengrvldadgqpipGLYAaGevaa 403
                    ++td+ +r+      ++ GLYA+G va+
     CTQ26605.1 292 IKTDAACRT------NVFGLYAIGDVAG 313
                    799******......***********93 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   2.7   1.2e-11   9.7e-09       1     144 [.       6     144 ..       6     145 .. 0.58
   2 ?   -3.0   0.0       4.5   3.5e+03       3      29 ..     177     203 ..     176     207 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.2e-11
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaeeqvvtgiareflerlrq.rggarlkkrskwntfepevakavleem 96 
                   Dv+++GGgp+G++AAi A + G +++Lve+ ++lGG   + +  +     + ++v++ i       +   + + +l+k      f  +v +++   +
    CTQ26605.1   6 DVLIIGGGPGGYVAAIRAGQLGLRTVLVEK-QHLGGICLNWGCIPTKALLHGAEVAHTITHASQLGISVgEVNVDLQKLV---QFSRTVSQQLTAGV 98 
                   9***************************97.69***98776655555544333566666555555553322222211112...24444444444433 PP

  FAD_oxidored  97 l...aeagvtvllntrlvevekegkriesvtveskeg.rktirAkvfiDATg 144
                       +++gv+v+ +t   + +       ++tve+ +g  + +rA+ +i ATg
    CTQ26605.1  99 AyllKKNGVQVIDGTARLRGK------GQITVEDARGeARDYRADHVILATG 144
                   333355555555555433222......2466666664466677776666665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.5
  FAD_oxidored   3 vVvGGgpaGvaAAiaAaraGakvlLve 29 
                   +++G+g+ Gv  A      G kv Lve
    CTQ26605.1 177 LIIGSGAIGVEFASLYNDLGCKVTLVE 203
                   89*********99999*********98 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   3.2   1.3e-08     1e-05       1      63 [.       6      70 ..       6     154 .. 0.66
   2 ?    5.1   0.0     0.013        10       3      29 ..     177     205 ..     175     258 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.3e-08
                CEEEE-SSHHHHHHHHHHHHTT--EEEE..ES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SH CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi..thkldtiaelsCnpsiggiakgllvrEidalggli 63
                dv +iGgG  G+ AA+ a +lG++++L+  +h  + +++ +C p+   +  +++ + i +   l 
  CTQ26605.1  6 DVLIIGGGPGGYVAAIRAGQLGLRTVLVekQHLGGICLNWGCIPTKALLHGAEVAHTITHASQLG 70
                799*************************9778888899*******99996666666666643333 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.013
                 EEE-SSHHHHHHHHHHHHTT--EEEE..E CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLi..t 29 
                  +iG G  G+e A     lG+kv+L+  +
  CTQ26605.1 177 LIIGSGAIGVEFASLYNDLGCKVTLVelA 205
                 79***********************9441 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   2.3    0.0038       2.9       1      33 [.       6      39 ..       6      46 .. 0.92
   2 !   15.0   0.0   1.8e-05     0.014     146     207 ..      92     150 ..      87     171 .. 0.73
   3 ?   -0.0   0.1      0.67   5.2e+02       2      27 ..     176     203 ..     175     208 .. 0.74
   4 !   13.2   0.1   6.2e-05     0.049     144     205 ..     212     274 ..     210     296 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0038
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                dv+iiGGG  G  +A  + + g  ++l+ek+  +g
  CTQ26605.1  6 DVLIIGGGPGGYVAAIRAGQLGlrTVLVEKQ-HLG 39
                8*****************9999********9.555 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEE.E.EEEEEEE--GGGHHHH CS
         DAO 146 akltaalaraaealGveilegtevtgleeedgkvwgverttpgen.d.aadavVnaaGawsdll 207
                 ++lta++a  ++++Gv+++ gt   +    +++  +ve +++ge  d +ad+v++a+Ga  + l
  CTQ26605.1  92 QQLTAGVAYLLKKNGVQVIDGTARLR----GKGQITVE-DARGEArDyRADHVILATGARPRAL 150
                 5899*****************55333....34467883.3335442346688******986544 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.67
                 EEEECTSHHHHHHHHHHHHTT..EEEEE CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtlle 27 
                 ++iiG+G iG+  A      g  Vtl+e
  CTQ26605.1 176 LLIIGSGAIGVEFASLYNDLGckVTLVE 203
                 58********977766644466777776 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 6.2e-05
                 EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE...EECTEEE.EEEEEEEE--GGGHH CS
         DAO 144 dpakltaalaraaealGveilegtevtgleeedgkvwgve...rttpgen.daadavVnaaGawsd 205
                 ++a++ aa+++ +e++G++i+++t vt ++ +d   +gv+   ++t ge  + ++ v +a G++ +
  CTQ26605.1 212 EDAEVSAAVRKSFEKRGIQIHTQTLVTQVQLTD---TGVRctlNDTGGEYsQDVERVLLAVGVQPN 274
                 5677889999*******************8874...66666667776666455577******9855 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.4   4.3e-07   0.00033       1      33 [.       5      37 ..       5      41 .. 0.93
   2 ?   -0.7   0.0      0.58   4.5e+02     141     165 ..     120     146 ..      80     164 .. 0.68
   3 ?    5.0   0.0      0.01         8       3      35 ..     176     208 ..     174     210 .. 0.91
   4 !    8.6   0.0   0.00084      0.66      83     164 ..     189     271 ..     187     291 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.3e-07
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVlllekak 33
                 +dv++iGgG+ G  aAi+a++ g r++l+ek++
   CTQ26605.1  5 YDVLIIGGGPGGYVAAIRAGQLGLRTVLVEKQH 37
                 59****************************974 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.58
                  E.EEEEE...TTEEEEESEEEE----S CS
  HI0933_like 141 gkfrvkt..kseeeleadklvlAtGGl 165
                  g+++v+    +++ ++ad+++lAtG  
   CTQ26605.1 120 GQITVEDarGEARDYRADHVILATGAR 146
                  4455544223667899********986 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.01
                  EEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVlllekakkl 35 
                  +++iG Ga G+  A   ++ g++V+l+e a+++
   CTQ26605.1 176 LLIIGSGAIGVEFASLYNDLGCKVTLVELASQI 208
                  68**************************88776 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.00084
                  HHHHHHTT--EE.E-STTEEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE..TTEEE..EESEEEE---- CS
  HI0933_like  83 ialveelgvelk.eedsgrlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvkt.kseeel..eadklvlAtGG 164
                   +l+++lg +++ +e   ++ pv+   +++  a  k  +++g++++++t v++v+ +++g +r ++ ++++e+    ++++lA+G 
   CTQ26605.1 189 ASLYNDLGCKVTlVELASQILPVE--DAEVSAAVRKSFEKRGIQIHTQTLVTQVQLTDTG-VRCTLnDTGGEYsqDVERVLLAVGV 271
                  566677777654256678899998..468999**********************998888.7877755555551156789999995 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.0   2.4e-06    0.0019       1      50 [.       9      58 ..       9      69 .. 0.79
   2 ?   -0.3   0.0       1.6   1.3e+03      12      32 ..      99     117 ..      96     167 .. 0.58
   3 !   12.1   0.1   0.00022      0.17       1      30 [.     178     207 ..     178     208 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.4e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE.TTCEECTS-- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev.pgvrvdygah 50
                   I+G+G +G vaA ++ + g++ +l+ek+ +lGG +  +   p  ++ +ga 
     CTQ26605.1  9 IIGGGPGGYVAAIRAGQLGLRTVLVEKQ-HLGGICLNWGCiPTKALLHGAE 58
                   9**************************8.9999887764435555555555 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.6
                    HHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  12 AylLakagfdvlllekrdrlG 32 
                    AylL+k+g++  +++   rl 
     CTQ26605.1  99 AYLLKKNGVQ--VIDGTARLR 117
                    6777776543..444444444 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00022
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdr 30 
                    I+G+G+ G  +A+l+ + g++v+l+e +++
     CTQ26605.1 178 IIGSGAIGVEFASLYNDLGCKVTLVELASQ 207
                    9*************************9876 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.5   9.2e-07   0.00071       2      33 ..       5      36 ..       4      38 .. 0.95
   2 ?    4.9   0.1     0.016        13       5      33 ..     177     205 ..     175     216 .. 0.90
   3 ?    1.9   0.1      0.13     1e+02     106     147 ..     215     256 ..     205     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9.2e-07
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekr 33
                   +dVlI+G+Gp G ++a    + G r+vlvek+
     CTQ26605.1  5 YDVLIIGGGPGGYVAAIRAGQLGLRTVLVEKQ 36
                   79****************************97 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.016
                    EEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvekr 33 
                    lI+G+G  G+  a+l    G +v+lve  
     CTQ26605.1 177 LIIGSGAIGVEFASLYNDLGCKVTLVELA 205
                    8*************************965 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.13
                    HHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCT CS
  FAD_binding_3 106 eleriLvehaeerglqvrfktevesleqdeegvtaevrdket 147
                    e+  +++++ e+rg+q++ +t v+ ++ +++gv+ ++ d   
     CTQ26605.1 215 EVSAAVRKSFEKRGIQIHTQTLVTQVQLTDTGVRCTLNDTGG 256
                    6677889999***********************999987754 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.5     2e+03       2      36 ..       4      36 ..       3      38 .. 0.70
   2 !   18.7   0.0     1e-06   0.00078     102     236 ..      87     216 ..      78     225 .. 0.72
   3 ?    2.5   0.1     0.085        66     292     340 ..     226     271 ..     218     273 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.5
  K_oxygenase  2 ilDligiGiGpsnLsLailleevkkelkalflerq 36
                  +D+ +iG Gp     ai++ +    l+++ +e+q
   CTQ26605.1  4 KYDVLIIGGGPGGYVAAIRAGQLG--LRTVLVEKQ 36
                 588999999988777676666666..777777766 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1e-06
  K_oxygenase 102 lrWvasqleeqvrfgeeveevepdeeeee..elltveskdaegeeeelearnlvlgvGtep.kiPevleklegkervvHsseylerkeellakkriaV 196
                   r v++ql+  v++  + + v++ + + +     +++++da+ge++ ++a +++l++G +p ++P ++ +    e   H  +y e  + +l ++++++
   CTQ26605.1  87 SRTVSQQLTAGVAYLLKKNGVQVIDGTARlrGKGQITVEDARGEARDYRADHVILATGARPrALPGIAPDG---E---HIWTYFEALRPKLLPRSLLI 178
                  5667777777777765555555555433333455778888******************8772578777753...4...55556666655699****** PP

  K_oxygenase 197 vGsGqSaaeifedllrrqkkvelklvtrsealeplddspf 236
                  +GsG  + e    l+++    +++lv  ++++ p++d+++
   CTQ26605.1 179 IGSGAIGVEF-ASLYNDLG-CKVTLVELASQILPVEDAEV 216
                  *****99994.55666655.78888888888888888765 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.085
  K_oxygenase 292 eerlrllpnrevesaeaegkgeveltlrneesgeeetlevdavvlATGY 340
                  ++ +++ +++ v++++ + + +v+ tl++  +g e +++v++v+lA G 
   CTQ26605.1 226 KRGIQIHTQTLVTQVQLTDT-GVRCTLND--TGGEYSQDVERVLLAVGV 271
                  45599999*******99985.88888877..99*************996 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.8e-06    0.0037       4      70 ..     178     243 ..     175     252 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.8e-06
                 EE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEE CS
     3HCDH_N   4 viGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisft 70 
                 +iG+G +G + a++    g++V+lv+ ++++l    +++++ ++k  ek+ ++  ++++++++++ t
  CTQ26605.1 178 IIGSGAIGVEFASLYNDLGCKVTLVELASQILPVEDAEVSAAVRKSFEKRGIQ-IHTQTLVTQVQLT 243
                 8********************************************99999988.5566677777655 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.3       9.9   7.7e+03      39      66 ..       7      34 ..       5      37 .. 0.82
   2 !   14.0   0.0     3e-05     0.023      34      70 ..     171     207 ..     157     244 .. 0.80
   3 ?   -1.6   0.0       1.9   1.5e+03      41      60 ..     407     426 ..     381     460 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 9.9
                  EEEES-SHHHHHHHHHHHHTT-EEEEES CS
  2-Hacid_dh_C 39 vGiiGlGrIGqavakrlkafgmkviayd 66
                  v iiG G  G  +a r+ ++g++ + ++
    CTQ26605.1  7 VLIIGGGPGGYVAAIRAGQLGLRTVLVE 34
                  7899999999999999999999877665 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 3e-05
                   GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  34 lsgktvGiiGlGrIGqavakrlkafgmkviaydrskk 70 
                   l  + + iiG G+IG ++a + + +g+kv+ ++   +
    CTQ26605.1 171 LLPRSLLIIGSGAIGVEFASLYNDLGCKVTLVELASQ 207
                   5567899**********************99987655 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.9
                   EES-SHHHHHHHHHHHHTT- CS
  2-Hacid_dh_C  41 iiGlGrIGqavakrlkafgm 60 
                   ++G+  +G +v + +++fg+
    CTQ26605.1 407 LLGAHMVGAQVTEQIQGFGI 426
                   67888889999999999987 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1    0.0004      0.31       1     109 [.       6     114 ..       6     154 .. 0.57
   2 ?    3.6   0.1     0.036        28       2      36 ..     176     208 ..     175     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0004
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnny.vWsdefedlga....leecvehsWsgtivylddgkkillg.raYgrvsskrlk 90 
                    Dv++iG+Gp g   A r    + gl+ vl+e       ++    W +  + +       ++ ++h  s++ + + + +  l    ++ r  s++l 
     CTQ26605.1   6 DVLIIGGGPGGYVAAIRA--GQLGLRTVLVEKQHL---GGIClNWGCIPTKALLhgaeVAHTITHA-SQLGISVGEVNVDLQKlVQFSRTVSQQLT 95 
                    9*****************..**********65432...3333366554443332122333333333.33334333333333333556666666666 PP

  Lycopene_cycl  91 eellerlvengvklleakv 109
                    + ++  l +ngv+  ++++
     CTQ26605.1  96 AGVAYLLKKNGVQVIDGTA 114
                    6666666666666666665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.036
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    +++iG+G+ g+  A     +  g kv+l+e + ++
     CTQ26605.1 176 LLIIGSGAIGVEFASLY--NDLGCKVTLVELASQI 208
                    78*************99..**********976665 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.026        20     244     273 ..       7      36 ..       2      50 .. 0.85
   2 ?    6.4   0.0     0.006       4.7     208     246 ..     199     237 ..     181     239 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.026
  Hydantoinase_A 244 tlvvfGGaGaqhaaalaeelgvkkvivppy 273
                     +l++ GG+G+ +aa  a +lg+++v+v++ 
      CTQ26605.1   7 VLIIGGGPGGYVAAIRAGQLGLRTVLVEKQ 36 
                     68999*********************9876 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.006
  Hydantoinase_A 208 lkveevAegilsvavenmanavrklsvergldpkeltlv 246
                     +++ e+A +il v   ++  avrk  ++rg ++++ tlv
      CTQ26605.1 199 VTLVELASQILPVEDAEVSAAVRKSFEKRGIQIHTQTLV 237
                     34789******************************9998 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.74   5.8e+02       1      30 [.       7      36 ..       7      73 .. 0.89
   2 ?   10.4   0.0    0.0009       0.7       1      38 [.     176     213 ..     176     265 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.74
                EEEE--STTHHHHHHHHHHHTEEEEEEES- CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpr 30
                ++i+G+g+ +   a  a +lg+r+++v+++
  CTQ26605.1  7 VLIIGGGPGGYVAAIRAGQLGLRTVLVEKQ 36
                689**********************99876 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0009
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefatker 38 
                 l+i+G g ++ + a+l + lg++vt+v+  +++  +e+
  CTQ26605.1 176 LLIIGSGAIGVEFASLYNDLGCKVTLVELASQILPVED 213
                 79*************************98887664444 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00034      0.27      18      51 ..       5      37 ..       2     101 .. 0.89
   2 ?   -2.9   0.0         4   3.1e+03      19      48 ..     175     203 ..     162     205 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00034
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSS CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersv 51
                 Dv+i+G+G+ G  aa   ++  +l+++++e++ 
  CTQ26605.1  5 YDVLIIGGGPGGYVAAIRAGQL-GLRTVLVEKQH 37
                69**************999998.*******9874 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEE CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvaile 48 
                  ++i+G+G+ G+  a       + kv+++e
  CTQ26605.1 175 SLLIIGSGAIGVEFASLYNDL-GCKVTLVE 203
                 57899******9998876666.88888777 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00037      0.29      39      78 ..     373     413 ..     360     422 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00037
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevr.lldaesgkvvhslsv 78 
                   ++ +++++ +gk La +  +g v+ ++dae+g+++ +  v
   CTQ26605.1 373 VRIGKFSYQSNGKALASGETEGFVKtIFDAETGELLGAHMV 413
                  456799****************996589******9876655 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.3      0.25   1.9e+02       9      29 ..       6      26 ..       2     145 .. 0.82
   2 ?    8.7   0.0    0.0029       2.3       8      49 ..     174     217 ..     169     276 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.25
  NAD_binding_7  9 kvlvvGgGevAarkvrkllea 29
                    vl++GgG+ ++  + +  + 
     CTQ26605.1  6 DVLIIGGGPGGYVAAIRAGQL 26
                   699***986554444444444 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0029
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleagakvtvvapev....keele..elvk 49 
                    ++ l++G G ++ + ++   + g+kvt+v  ++        e  e v+
     CTQ26605.1 174 RSLLIIGSGAIGVEFASLYNDLGCKVTLVELASqilpV---EdaE-VS 217
                    789*************************8777433321...1221.22 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.7      0.01       7.9      30      59 ..       6      35 ..       3      39 .. 0.89
   2 ?   -0.1   0.1      0.59   4.6e+02      28      73 ..      49      92 ..      33     120 .. 0.74
   3 ?    6.1   0.0    0.0076       5.9      30      63 ..     175     208 ..     168     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.01
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEES CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDv 59
                  vl+iGgG  G  A+  a +lg +++++++
   CTQ26605.1  6 DVLIIGGGPGGYVAAIRAGQLGLRTVLVEK 35
                 69********************99888776 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.59
                 --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTC CS
  AlaDh_PNT_C 28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgak 73
                 p k l  G+ va  + i  a++lg +V  ++v+ ++l q++   ++
   CTQ26605.1 49 PTKALLHGAEVA--HTITHASQLGISVGEVNVDLQKLVQFSRTVSQ 92
                 577777777776..56999999999999999999999998874444 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0076
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrpar 63 
                    l+iG G  G++ ++  + lg kVt++++ ++ 
   CTQ26605.1 175 SLLIIGSGAIGVEFASLYNDLGCKVTLVELASQI 208
                  679************************9987765 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.4      0.21   1.6e+02       2      34 ..       9      36 ..       8      52 .. 0.77
   2 ?    6.8   0.1    0.0078       6.1     130     155 ..     117     145 ..      83     146 .. 0.67
   3 ?    5.9   0.4     0.015        12     108     155 ..     220     271 ..     214     272 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.21
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdps 34
                   i+G+Gp G  ++ r  +       l+  l++++
     CTQ26605.1  9 IIGGGPGGYVAAIRAGQL-----GLRTVLVEKQ 36
                   9********999987666.....3555555555 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0078
  NAD_binding_9 130 radgq.avlladg..aslaadaVvLAlGh 155
                    r++gq +v  a+g  + ++ad+V+LA+G 
     CTQ26605.1 117 RGKGQiTVEDARGeaRDYRADHVILATGA 145
                    344554777777744569*********95 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.015
  NAD_binding_9 108 larlpegvtvevh.raevvdleeradgqavll.adgasl..aadaVvLAlGh 155
                    +++  e+  +++h ++ v++++ +++g++ +l ++g ++  ++++V LA+G 
     CTQ26605.1 220 VRKSFEKRGIQIHtQTLVTQVQLTDTGVRCTLnDTGGEYsqDVERVLLAVGV 271
                    44443445677773568999*******977773334443349********96 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   0.00016      0.13       1      40 [.       6      42 ..       6      56 .. 0.84
   2 ?   -4.0   0.0       6.5     5e+03     166     210 ..     104     146 ..     100     149 .. 0.73
   3 ?   -0.6   0.1      0.58   4.5e+02       2      34 ..     176     205 ..     175     244 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---S CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeigtvg 40
                    +++i+GGG+ G++aA+  ++ +   l+  lve++++g + 
      CTQ26605.1  6 DVLIIGGGPGGYVAAIRAGQLG---LRTVLVEKQHLGGIC 42
                    699************9988887...999*****9999775 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6.5
                     HCT-EEEE--EEEEEE-TTS-EEEEEETT.S-EEE-SEEEE-SGGG CS
  Trp_halogenase 166 arGvtrvegkvvevqldedgrveslrled.greveadlfiDcsGfr 210
                     ++Gv++++g+    +l+ +g+++  +     r + ad +i ++G r
      CTQ26605.1 104 KNGVQVIDGTA---RLRGKGQITVEDARGeARDYRADHVILATGAR 146
                     67899999876...88888888765555425678888888888877 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.58
                     EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkgklevtlvese 34 
                     ++i+G G  G   A++ +  +   ++vtlve +
      CTQ26605.1 176 LLIIGSGAIGVEFASLYNDLG---CKVTLVELA 205
                     689999999999999999888...999999954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 3463.72
//
Query:       CTQ26606.1  [L=511]
Description: Dihydrolipoamide acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-84  281.0   0.0    8.4e-84  280.6   0.0    1.1  1  2-oxoacid_dh     2-oxoacid dehydrogenases acyltransferase (ca
    1.7e-17   63.5   1.5    1.1e-08   35.2   0.1    2.8  2  E3_binding       e3 binding domain
      2e-17   62.8   0.0    1.2e-16   60.3   0.0    2.1  2  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
      0.026   14.6   0.1        8.4    6.5   0.0    3.1  4  QRPTase_N        Quinolinate phosphoribosyl transferase, N-te
      0.036   13.9   0.0          5    7.0   0.0    3.3  3  Biotin_lipoyl_2  Biotin-lipoyl like
      0.044   12.6   1.3      0.093   11.5   0.1    1.8  2  SLD3             DNA replication regulator SLD3


Domain annotation for each model (and alignments):
>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.6   0.0   2.8e-87   8.4e-84       4     232 ..     278     503 ..     275     504 .. 0.98

  Alignments for each domain:
  == domain 1  score: 280.6 bits;  conditional E-value: 2.8e-87
                   XXXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH-GGGG-EE.EESEEEE--SS--EE CS
  2-oxoacid_dh   4 eervplsgirkaiakrlteskqeiphftlsdevdvtallelrkelkekeakeekakltlldflikavalAlkefPelnasvdeeekeivvkkhvniG 100
                    e++p+sg+r+aia+rl+ skq+ phf ls+++d+++ll+lr++++++   +  +k++++d+l+ka+alAl ++P++n ++de +++i++  + +i+
    CTQ26606.1 278 FESIPMSGMRRAIASRLQTSKQQSPHFRLSVDLDLERLLALRQDINREV--PG-VKISVNDLLVKACALALVAVPDVNIQFDEAAQSIRRFTDADIS 371
                   6899*******************************************98..45.5****************************************** PP

                   EE--------EEEE--GGG--HHHHHHHHHHHHHHHTTT---GGGTSS-SEEEE---------------TT-SEEEEE---.B--TTSTT-HT---E CS
  2-oxoacid_dh 101 vAvatprGLlvPviknadkkslleiakelkelaekaregklkpedleggtftisNlGmlGvtsftPiinppqvaIlgvgrikerpvvkegelvvrkv 197
                   vAva+p GL++P+++ a++ks+++i++e+++l+++a++g+lkpe+++ggtf++sNlGmlGv++f +iinppq+aIl++g+ + r+vv++g++v+r+ 
    CTQ26606.1 372 VAVALPAGLITPIVRSANRKSISDISNEIHSLVTRAKAGTLKPEEFQGGTFSLSNLGMLGVRQFDAIINPPQSAILAIGAGEVRAVVRDGQIVARQQ 468
                   ************************************************************************************************* PP

                   EEEEEEEETTT--HHHHHHHHHHHHHTT-HHXXXX CS
  2-oxoacid_dh 198 mtlslsaDHRvidGaeaarFlntlkkllenpeell 232
                   mt+sls+DHRvidGa++a+Fl++lk+l+e p++++
    CTQ26606.1 469 MTVSLSCDHRVIDGAAGAAFLRELKRLIETPTLMF 503
                   *******************************9997 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   1.7e-09     5e-06       2      36 .]     154     188 ..     153     188 .. 0.94
   2 !   35.2   0.1   3.8e-12   1.1e-08       2      36 .]     221     255 ..     220     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.7e-09
                 BE-HHHHHHHHHCT--TTTS---CTTTBE-HHHHC CS
  E3_binding   2 lAsPaaRklAkelGidLsdvkGtGpgGRItkeDVl 36 
                  A+P a +l +  G+dL++v G+G+g RI   D +
  CTQ26606.1 154 NATPHALRLSARWGVDLKKVRGSGRGDRISVSDLE 188
                 69***************************999975 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 3.8e-12
                 BE-HHHHHHHHHCT--TTTS---CTTTBE-HHHHC CS
  E3_binding   2 lAsPaaRklAkelGidLsdvkGtGpgGRItkeDVl 36 
                  A+P+aR+lA  lGi+L d   +G +GR+ ++DVl
  CTQ26606.1 221 SATPLARRLAGKLGINLHDCRSSGSRGRVSRDDVL 255
                 59********************************7 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   3.9e-20   1.2e-16       2      71 ..       6      76 ..       5      77 .. 0.97
   2 ?   -1.1   0.0      0.56   1.7e+03      16      37 ..     453     474 ..     443     477 .. 0.70

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 3.9e-20
                   EEEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEE CS
  Biotin_lipoyl  2 eiksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdlla 71
                   ++++P+ G s+eeg  +++ +++Gd  + gq ++e+e+ K ++ +eap aG++  il+ eG+t++vg +la
     CTQ26606.1  6 TLEMPKWGLSMEEGlLARWAIQEGDDFTRGQEICEIETSKIVNVLEAPFAGTLRRILAREGETLQVGAVLA 76
                   789*****************************************************************997 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.56
                    ECSESSSTTCEE-TTSEEEEEE CS
  Biotin_lipoyl  16 vvevlvkvGdkVkagqvlaeve 37 
                     v+  v +G+ V+  q  + ++
     CTQ26606.1 453 EVRAVVRDGQIVARQQMTVSLS 474
                    5567788888888888777665 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0028       8.4      44      69 ..      18      43 ..       9      52 .. 0.87
   2 ?   -2.1   0.0       1.4   4.3e+03      49      65 ..      60      76 ..      46      79 .. 0.76
   3 ?   -3.2   0.0       3.1   9.3e+03      30      57 ..     220     246 ..     216     257 .. 0.73
   4 ?    4.2   0.0     0.015        46      47      74 ..     453     480 ..     444     483 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0028
                TTTEEEESS-TT-EEETTEEEEEEEE CS
   QRPTase_N 44 pglevellvkDGervekgdvlleieG 69
                +gl + + +++G+ +++g+ ++eie 
  CTQ26606.1 18 EGLLARWAIQEGDDFTRGQEICEIET 43
                567789*****************986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.4
                EESS-TT-EEETTEEEE CS
   QRPTase_N 49 ellvkDGervekgdvll 65
                 +l+++Ge+++ g+vl+
  CTQ26606.1 60 RILAREGETLQVGAVLA 76
                46788999999998886 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.1
                 E-SHHHHHHHHHHHTTTEEEESS-TT-E CS
   QRPTase_N  30 vaGlevaeevfellpglevellvkDGer 57 
                 v+ ++ a+++  +l g++ +   ++G+r
  CTQ26606.1 220 VSATPLARRLAGKL-GINLHDCRSSGSR 246
                 67788889999999.9998888888875 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.015
                 EEEESS-TT-EEETTEEEEEEEEEHHHH CS
   QRPTase_N  47 evellvkDGervekgdvlleieGnaral 74 
                 ev + v+DG+ v+++++ + ++++ r +
  CTQ26606.1 453 EVRAVVRDGQIVARQQMTVSLSCDHRVI 480
                 78999****************9998876 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0017         5      11      37 ..      19      45 ..      15      52 .. 0.89
   2 ?    2.9   0.0     0.032        95       6      31 ..      51      76 ..      47      77 .. 0.91
   3 ?   -1.5   0.0      0.77   2.3e+03      18      24 ..     458     464 ..     439     466 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0017
  Biotin_lipoyl_2 11 GrVaqlnVkdGqrVkaGdvLaelDsra 37
                     G++a++++++G+    G+ + e+++++
       CTQ26606.1 19 GLLARWAIQEGDDFTRGQEICEIETSK 45
                     99********************99876 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.032
  Biotin_lipoyl_2  6 aapvsGrVaqlnVkdGqrVkaGdvLa 31
                      ap++G++ +++ ++G   + G vLa
       CTQ26606.1 51 EAPFAGTLRRILAREGETLQVGAVLA 76
                     699**************999999987 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.77
  Biotin_lipoyl_2  18 VkdGqrV 24 
                      V+dGq V
       CTQ26606.1 458 VRDGQIV 464
                      8888888 PP

>> SLD3  DNA replication regulator SLD3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.13   3.9e+02     429     474 ..     107     161 ..      81     190 .. 0.66
   2 ?   11.5   0.1   3.1e-05     0.093     455     527 ..     204     301 ..     182     324 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.13
                 XXXXXXXXXXX.XXXX.....XXXXXXXXXXXX........XXXXXXXXXXXXXX CS
        SLD3 429 lvakeiveaae.krlsklqassrkskkpvrkpl........aqtvqVkATPkknr 474
                 +va +++ +a  k +s+++  s+ ++ pv ++          +  qV+ATP + r
  CTQ26606.1 107 AVAPDVAAQAGdKPASIVSPPSNSPEPPVGQTVipvslqgvTDVTQVNATPHALR 161
                 5555555555424444443335555555555533333333244499*****8877 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.1e-05
                 XXXXXX.....XXXXXXXXXXXXXX.............................................XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SLD3 455 pvrkpl.....aqtvqVkATPkknr......................kkDvla...kaeeesetaasaseetepaksssaqvvPsstlrksskekrkns 523
                 pvr+++     a+ +qV+ATP ++r                      + Dvla          + + +++ ++++ ++  +++P+s++r+   ++ ++s
  CTQ26606.1 204 PVRRSKvprshADDSQVSATPLARRlagklginlhdcrssgsrgrvsRDDVLAaalL-----LDEHPQTSPVQESAPAPFESIPMSGMRRAIASRLQTS 297
                 44444333222677*******999988888888777777777777744444444321.....2223333334444578999********9999988777 PP

                 .... CS
        SLD3 524 tssr 527
                 ++++
  CTQ26606.1 298 KQQS 301
                 6554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3777.05
//
Query:       CTQ26607.1  [L=339]
Description: Acetoin dehydrogenase E1 component beta-subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-58  196.6   0.0    4.4e-58  195.9   0.0    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
    1.2e-39  135.0   0.3    2.2e-39  134.2   0.1    1.6  2  Transketolase_C  Transketolase, C-terminal domain
    6.8e-05   23.1   0.1    0.00015   22.0   0.1    1.6  1  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.9   0.0   7.3e-62   4.4e-58       4     176 ..       5     192 ..       3     194 .. 0.99

  Alignments for each domain:
  == domain 1  score: 195.9 bits;  conditional E-value: 7.3e-62
                   EHHHHHHHHHHHHHCTTTTEEEEESSTH................HHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHH CS
  Transket_pyr   4 awrkaeaealaellkedpevvligaDva................ggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdF 84 
                   ++r+a++eala+++++d++vvlig+D++                gg+++v+kgl++++g++rvid++i+E+a++g+a+Gaa++g l++++e++F+dF
    CTQ26607.1   5 TYREAVKEALAQEMERDERVVLIGEDLRgghggnapeeakieafGGVLGVTKGLWTQFGSDRVIDTPITESAIIGMAAGAAATG-LRPVAELMFMDF 100
                   79**********************************************************************************.9*********** PP

                   HGGG..HHGGHHHHHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  85 angA..qiyadqairsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                   + ++   +y+++a+++++++gk+++++v+r +ig+g+++++++s++++++++++pglkvv+Ps+p+++k+ll + ir  d++Pvv++++k+l+ 
    CTQ26607.1 101 FGVShdALYNQAAKFRYMFGGKARAPLVMRGMIGAGFSAAAQHSQSPYNIFATTPGLKVVVPSTPYDVKGLLIQSIR--DDDPVVFCEHKMLYD 192
                   *****99**********************************************************************..899**********97 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.6   9.8e+03      54      75 ..      14      34 ..       9      44 .. 0.68
   2 !  134.2   0.1   3.7e-43   2.2e-39       1     124 []     207     329 ..     207     329 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.6
                     HHHHHHHHSEEEEEEEEESTTS CS
  Transketolase_C 54 ilesvkktgrlvvveeavkrgG 75
                     +++ +++ +r+v++ e+ + gG
       CTQ26607.1 14 LAQEMERDERVVLIGEDLR-GG 34
                     4555677778888777665.55 PP

  == domain 2  score: 134.2 bits;  conditional E-value: 3.7e-43
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdglda 94 
                      g a+  reg+dvt++a ++mv+ a ++a++L++egis+eVvd+rt++plD+e ilesv++tgr+v+v+e + r+G++ +vaa++a +af++l+a
       CTQ26607.1 207 GVANYTREGEDVTIIALSAMVHKANQVADKLAREGISVEVVDPRTISPLDEEGILESVASTGRVVIVDESAARFGFAHDVAALIASQAFHYLKA 300
                      568999**************************************************************************************** PP

                      EEEEEEE-SSSSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  95 pvkrvggpdviepgsaeelekafgldaeki 124
                      pv+ v+ p++++p+s ++lek++++ +e+i
       CTQ26607.1 301 PVLLVTPPHTPVPFS-PALEKLWIPGVERI 329
                      ***************.99*******99987 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   2.6e-08   0.00015       2      74 ..     217     286 ..     216     303 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.6e-08
                 SEEEEE-STHHHHHHHHHHHHHHTT--EEEEEES--BS--HHHHHHHSTT-SEEEEEE-S-.-TT-G-HHHHHH CS
     PFOR_II   2 evvivamGsvagtaksavdelReegikvGllrlrtlrPFPeeelkellkkvkkvvvldrni.sfgseGqlveev 74 
                 +v i+a+ +++ +a +++d+l +egi+v ++ +rt+ P  ee + e ++++ +vv +d ++  fg+    +++v
  CTQ26607.1 217 DVTIIALSAMVHKANQVADKLAREGISVEVVDPRTISPLDEEGILESVASTGRVVIVDESAaRFGF----AHDV 286
                 799****************************************99999999888888876614554....4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2743.36
//
Query:       CTQ26608.1  [L=319]
Description: Acetoin dehydrogenase E1 component alpha-subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-83  278.2   0.0    7.2e-83  278.0   0.0    1.0  1  E1_dh            Dehydrogenase E1 component
    2.8e-07   30.5   2.7    1.2e-06   28.4   2.7    1.9  1  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
  ------ inclusion threshold ------
      0.025   13.8   0.1      0.044   13.0   0.1    1.3  1  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
       0.04   12.9   0.0      0.057   12.4   0.0    1.3  1  Transketolase_N  Transketolase, thiamine diphosphate binding 


Domain annotation for each model (and alignments):
>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.0   0.0   1.6e-86   7.2e-83       1     299 [.      12     308 ..      12     309 .. 0.98

  Alignments for each domain:
  == domain 1  score: 278.0 bits;  conditional E-value: 1.6e-86
                 HHHHHHHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TTSEEEESS--HHHHHHTT--HHHHHHHHTT-T....TTSSGTT-.-E..BTT.. CS
       E1_dh   1 eklvllrrvedaldalykrkkrigfyhlsagqealkvgiaaalekeDliiteYReagvllarglsleeilaeltgkv....kgkggsrhelmyaekesr 95 
                 +k++ +r +e++l+++  + ++ gf hl+ g+ea++vg+   l+  D+i +++R++g+++a+g +++ ++ae+ gk     +gkggs+h +++ +k+  
  CTQ26608.1  12 RKMREIRTFEERLHQENTSGDIPGFIHLYTGEEAIAVGVCENLTSADFIGSTHRGHGHCIAKGCDIHGMMAEIFGKDsglcRGKGGSMH-IADLSKG-- 107
                 58999************************************************************************************.**9***9.. PP

                 BEEE-SSTTTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEEEET CS
       E1_dh  96 ilggngivgaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygisTeaekasaskeladrargvgipglrVdg 194
                 +lg+n ivg  +pl+ G+al ak+ ++ +v + ++GDg++nqG v+ea+n+a + +lp++f+ eNN+yg +T  ++a    ++a ra+g+g p ++Vdg
  CTQ26608.1 108 MLGANAIVGGAPPLAIGAALTAKTLKTGNVGVSFTGDGGSNQGLVFEAINMAVVLQLPAVFIFENNGYGEGTGHDYAVGGRDIARRAAGFGLPAVTVDG 206
                 *************************************************************************************************** PP

                 TSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHH CS
       E1_dh 195 nDplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeelkeiekevrkeveeavkkaes 293
                 +D++avyeA+ +A++rareg gp++ie++ +R +gH+e D p  yr+  ev+  r+++dp++++ +++++  ++++eel +i++ev++ v++av ka +
  CTQ26608.1 207 TDFFAVYEATSEAVKRAREGGGPSVIEAKAFRWHGHFEGD-PALYRAEGEVQRLREQHDPLKIFTAKVKQ--HITKEELAAIDEEVEALVNDAVLKARA 302
                 ****************************************.999***********************976..79************************9 PP

                 S----G CS
       E1_dh 294 kkelep 299
                 + +++p
  CTQ26608.1 303 AAYPAP 308
                 999887 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   2.7   2.7e-10   1.2e-06      27     153 .]     112     234 ..      98     234 .. 0.73

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 2.7e-10
                   TS-TTTHHHHHHHHHH....HSTTSEEEEEEEHHH.HHHT.GGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB.BS----HHHHH CS
  TPP_enzyme_C  27 lgtmGyglpaAiGakl....akpdrevvaivGDGg.flmi.lqelatavrrnlpitvvvlnNegygmtggqqepfggkrksgpagkdlkpvdfakla 117
                    +  G + p AiGa+l    +k ++  v+++GDGg  +   ++++  av  +lp +++  nN++   tg+     gg              d+a+ a
    CTQ26608.1 112 NAIVGGAPPLAIGAALtaktLKTGNVGVSFTGDGGsNQGLvFEAINMAVVLQLPAVFIFENNGYGEGTGHDY-AVGG-------------RDIARRA 194
                   567899**********75443667899*******94455568999999999999887766666555555543.3332.............3899999 PP

                   HHTTSEEE......EESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C 118 ealGakga......rvekadveeleealkealekkgpaliev 153
                   +++G +++         ++  e + ea+k+a+e +gp++ie+
    CTQ26608.1 195 AGFGLPAVtvdgtdFFAVY--EATSEAVKRAREGGGPSVIEA 234
                   9999997724444433344..77799999999********85 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   9.9e-06     0.044     120     172 ..     122     174 ..     116     187 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.9e-06
  DXP_synthase_N 120 alGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNe 172
                     a G a ++++ ++ +  v+  GDg+   G+ fea+n +  l+   + i+ +N 
      CTQ26608.1 122 AIGAALTAKTLKTGNVGVSFTGDGGSNQGLVFEAINMAVVLQLPAVFIFENNG 174
                     67888888888888999************************999999999886 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.3e-05     0.057     149     243 ..     140     236 ..     127     305 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.3e-05
                      EEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEE.TTEEGGGT--S-HHHHHHHTT-EEEEETTTT-HHHHHHHHHHHHH-T...TS-EE CS
  Transketolase_N 149 vilgDgclmeGvsseasslagtlkLgkLivlyDdnkis.idGeteisftedvakrfeaygWhvievedgedveaikaaieeakaek...dkPsl 238
                       + gDg  + G+  ea+++a +l+L  +  ++++n      G+       d+a+r + +g   ++  dg+d  a+ +a +ea +       Ps+
       CTQ26608.1 140 SFTGDGGSNQGLVFEAINMAVVLQLPAV-FIFENNGYGeGTGHDYAVGGRDIARRAAGFGLPAVT-VDGTDFFAVYEATSEAVKRAregGGPSV 231
                      589**********************975.566777665145565666678888887767766665.7899998888887777433201156888 PP

                      EEEE- CS
  Transketolase_N 239 iklrt 243
                      i+ + 
       CTQ26608.1 232 IEAKA 236
                      88765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2585.35
//
Query:       CTQ26609.1  [L=921]
Description: Trans-acting regulatory protein of aco operon [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-21   75.8   1.6    3.5e-21   74.5   1.6    1.6  1  GerE          Bacterial regulatory proteins, luxR family
    4.2e-20   72.4  12.8    8.6e-20   71.4   9.5    2.2  2  TPR_MalT      MalT-like TPR region
    1.8e-06   28.4   0.1    1.8e-06   28.4   0.1    2.8  4  AAA_16        AAA ATPase domain
    5.6e-05   22.6   0.2     0.0002   20.8   0.1    2.1  2  Sigma70_r4    Sigma-70, region 4
    0.00014   22.2   0.0     0.0017   18.6   0.0    2.7  3  AAA_22        AAA domain
     0.0012   18.5   0.1     0.0035   17.0   0.1    1.9  1  Sigma70_r4_2  Sigma-70, region 4
      0.004   17.2   0.0      0.032   14.3   0.0    2.3  1  AAA_14        AAA domain
     0.0051   16.3   0.2      0.014   14.9   0.2    1.8  1  HTH_24        Winged helix-turn-helix DNA-binding
     0.0083   15.9   0.1     0.0083   15.9   0.1    2.1  2  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.067   12.9   0.1       0.49   10.1   0.0    2.4  3  AAA_30        AAA domain
       0.14   12.0   0.2       0.42   10.4   0.2    1.9  1  HTH_38        Helix-turn-helix domain
       0.14   12.4   0.0       0.52   10.6   0.0    1.9  2  AAA_19        AAA domain
        1.4    9.7  15.0        2.8    8.8   0.2    6.5  6  TPR_4         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   1.6   2.5e-24   3.5e-21       3      55 ..     860     912 ..     859     914 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 2.5e-24
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvr 55 
                 Ls+RE+++L+l+aeG++nkeIA++l iS++TVk h++ni+ KL+v+sr+++  
  CTQ26609.1 860 LSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMS 912
                 9*************************************************986 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.093   1.3e+02     213     267 ..     412     463 ..     388     470 .. 0.80
   2 !   71.4   9.5   6.3e-23   8.6e-20       4     333 ..     482     820 ..     480     823 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.093
    TPR_MalT 213 laqgdlaaaerwleaaelpsdddnhflelelrnlarvllalgrydeAlellerLl 267
                   +gd++ +  w+++ ++++d++ + l+   +nla +l +  ++de ++ll++L 
  CTQ26609.1 412 AEEGDIDTLISWMHHLPPSTDPSRVDLQ---INLAWALAHYFHFDESRQLLDNLD 463
                 4689***************999888888...999999999999999999999985 PP

  == domain 2  score: 71.4 bits;  conditional E-value: 6.3e-23
    TPR_MalT   4 aalrAllaiasgdaeralelArqALallpeddllariaatavlGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAlet 102
                  ++rA    + ++++++l++ +  La  p  d  + +++  +l + ++++ + ++Al++ q + +     d+l v+++    +a+ +  qG+L +A   
  CTQ26609.1 482 RVVRAICEAFAENIPESLAIVQPLLAEVPCGDTWVDGLICNILSYCHVVNQRYHDALEVQQHMPSPESPLDNLFVSVYRAFIIAQCHLCQGDLGKAGWY 580
                 689**************************************************************999****************************999 PP

    TPR_MalT 103 yeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleql.epeaaldayvllarialaqGdleeAetllekaeelaresnfh.vd 199
                  e+ l++a+   ++q      l  lla++ yE  + +  e+ l   +e ++++  p+a  ++y+ lar al  +   eAe+lle a++la++  ++ ++
  CTQ26609.1 581 AEKTLRQAECYTGTQSTSGATLAPLLAEIAYECQRGDSPEHLLADRLEFIDRFsPPDALSRCYTYLARQALDNDMPYEAERLLEHAQRLAVSRGWQrLQ 679
                 9*********9999866666777899***************************5669999**********************************96157 PP

    TPR_MalT 200 wlanaeevrvrlwlaqgdlaaaerwleaa.........elpsdddnhflelelrnlarvllalgrydeAlellerLlkaaeelgrvrslieiliLqala 289
                 +   ae+vrvr  l++g    ae++ ++            + +++  +         r+lla g+  +A  ll++++++ e +g      +   L +la
  CTQ26609.1 680 AMLLAEQVRVR--LQRGSFTGAEQLQRQLeqmaasfrmDAEHPCQRAIVMSASLSRSRLLLATGQAPQACVLLAEMVSDQESRGDRLTAARLRTLWSLA 776
                 77899999999..79999999999888873222222221222222333333333445777888********************99999*********** PP

    TPR_MalT 290 lqaqgreeeAlaaLeqALeLAepegyirsFvdeGeplakLLkel 333
                 l+ +g++ +A  + + +++LAe++    +F++ G+ l +LL  +
  CTQ26609.1 777 LWNSGKTAAARTTFQPVVQLAEQQHLKGLFLEAGDTLQPLLAGM 820
                 *****************************************865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1   1.3e-09   1.8e-06      11     168 ..      46     185 ..      42     186 .. 0.66
   2 ?   -3.1   0.0       6.3   8.7e+03      37      88 ..     300     340 ..     299     398 .. 0.59
   3 ?   -2.2   0.1       3.4   4.7e+03     122     122 ..     677     677 ..     612     750 .. 0.60
   4 ?   -2.4   0.0         4   5.5e+03      36      50 ..     781     795 ..     779     879 .. 0.67

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.3e-09
      AAA_16  11 qLlsalervrsgrpelvllsGesGvGKsslvrellralekd..ggiflrgkcdql..esaipysalaqalareellrqlldeaesaeleawrekleeal 105
                 +Ll++l++v +   +l ++   +G GK++l+ ++++++ ++  ++ +l+ + d+    + ipy  l+qal r  l+++ +++        wr+  e+ l
  CTQ26609.1  46 RLLQLLSPVQQC--RLGVVCAGAGFGKTTLLAQWHQQMVAQgeRIAWLSLDEDDDdvWQFIPY--LLQAL-R-PLYADWDAD-------FWRDMEEQKL 131
                 788999988644..555566668*****************95434445555555411333555..66666.4.666666555.......6666555555 PP

      AAA_16 106 aavpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslql.laaLlrllesk.pll 168
                 +        ++++ll+ l + l ++++    ++l++Dd++ + +      l +L + + +  +l+
  CTQ26609.1 132 S--------SSEQLLAGLINQLHYCPH---DVYLIIDDFHVINDRGVYEaLGYLIKHAPAAlHLI 185
                 5........446888888888878876...49********8877555444888888777755665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.3
      AAA_16  37 Ksslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 K+s + +l  +l+ +    ++g+ d+        a +  ++r+ l+   lde
  CTQ26609.1 300 KTSFLSRLNAELCNA----VTGRDDSK-------AMLAWIERHNLFLSALDE 340
                 566666666666666....66665555.......233333333444444444 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.4
      AAA_16 122 l 122
                  
  CTQ26609.1 677 R 677
                 1 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 4
      AAA_16  36 GKsslvrellralek 50 
                 GK++ +r+ ++++ +
  CTQ26609.1 781 GKTAAARTTFQPVVQ 795
                 677777666664332 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.7   7.8e+03      27      35 ..     666     674 ..     662     675 .. 0.86
   2 !   20.8   0.1   1.5e-07    0.0002       4      49 ..     859     903 ..     858     904 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.7
                 HHHHTS-HH CS
  Sigma70_r4  27 gerlgiSre 35 
                 ++rl +Sr+
  CTQ26609.1 666 AQRLAVSRG 674
                 899****98 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.5e-07
                 HS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4   4 sLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 +L+ere ++l+l  +  ++ +EI++ l iS e+V+ ++k+   kL+
  CTQ26609.1 859 ELSERELQILQLIAEGQMN-KEIARSLAISAETVKWHIKNIYAKLK 903
                 7*************77765.************************98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.3e-06    0.0017       4     113 ..      56     172 ..      54     191 .. 0.69
   2 ?   -0.9   0.0       1.3   1.8e+03      44      88 ..     610     652 ..     582     692 .. 0.66
   3 ?   -3.4   0.0       8.1   1.1e+04      16      34 ..     780     798 ..     779     823 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.3e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee......erpevv...fvtlpsst.sskdllrellralglelkaerlsseellealeqalraravi 92 
                 +++++vv++ +G GKTtll++ ++q +++ +          +++v     + l+++    +d   ++ r++++++ +   sse+ll+ l ++l+ +   
  CTQ26609.1  56 QCRLGVVCAGAGFGKTTLLAQWHQQMVAQGERIAwlsldeDDDDVWqfiPYLLQALRpLYADWDADFWRDMEEQKLS---SSEQLLAGLINQLHYCPHD 151
                 7899*********************9776444446777764444442224444444433333355555555555555...******9999999999998 PP

      AAA_22  93 elliiDEaqhlrseealeeLr 113
                 + liiD+++ ++   ++e L 
  CTQ26609.1 152 VYLIIDDFHVINDRGVYEALG 172
                 99*******996455555553 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
      AAA_22  44 fvtlpsstsskdllrellralglelkaerlsseellealeqalra 88 
                  ++++ + s++ ll + l+++++   ++++ +++++++l++++ +
  CTQ26609.1 610 AYECQRGDSPEHLLADRLEFIDR--FSPPDALSRCYTYLARQALD 652
                 56666666666666666666663..33446666666555555444 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 8.1
      AAA_22  16 tGKTtllrrlleqldeeak 34 
                 +GKT  +r+ ++  ++ a+
  CTQ26609.1 780 SGKTAAARTTFQPVVQLAE 798
                 6888888887776554443 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   2.5e-06    0.0035      10      54 .]     859     902 ..     858     902 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.5e-06
                   TS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  10 eLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   eL+er+ +i+ l+  eg   kEIA+ l is  tVk +++   +kL
    CTQ26609.1 859 ELSERELQILQLI-AEGQMNKEIARSLAISAETVKWHIKNIYAKL 902
                   8***********8.69999****************9998877776 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.3e-05     0.032      13     100 ..      68     188 ..      65     209 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.3e-05
      AAA_14  13 vGKTtllkqlikellvkkesilyinldderd..............................kkladpekllelilek..lkeekktylflDEiqev..p 77 
                  GKTtll q  ++  ++ e+i  ++ld+++d                              +kl+ +e+ll  + ++  +  +++ yl++D  + +  +
  CTQ26609.1  68 FGKTTLLAQWHQQMVAQGERIAWLSLDEDDDdvwqfipyllqalrplyadwdadfwrdmeeQKLSSSEQLLAGLINQlhYC-PHDVYLIIDDFHVIndR 165
                 6*********99999*************99999999999999999999988888887765544444446666666663333.6999*****99988445 PP

      AAA_14  78 ewekalkslvdegknldvivtGS 100
                 ++++al +l+++ +    ++ GS
  CTQ26609.1 166 GVYEALGYLIKHAPAALHLIIGS 188
                 68999999999887777777777 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2     1e-05     0.014       2      40 ..     861     897 ..     860     897 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-05
      HTH_24   2 detdrkILelLqknprisqreLAerlglSpstvnrrlkr 40 
                 +e +++IL+l+ +  +  ++e+A+ l +S  tv++++k+
  CTQ26609.1 861 SERELQILQLIAE--GQMNKEIARSLAISAETVKWHIKN 897
                 6778899999999..899*******************96 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.4       8.7   1.2e+04       6      16 ..     676     686 ..     676     692 .. 0.76
   2 !   15.9   0.1   6.1e-06    0.0083       6      41 ..     863     899 ..     861     906 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 8.7
      HTH_23   6 eRlrillllae 16 
                 +Rl+++ll+ +
  CTQ26609.1 676 QRLQAMLLAEQ 686
                 59999999987 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 6.1e-06
      HTH_23   6 eRlrillllaeGlsvreIAreLgvsrrTvy.rwlkry 41 
                 + l+il+l aeG+  +eIAr L +s  Tv  ++++ y
  CTQ26609.1 863 RELQILQLIAEGQMNKEIARSLAISAETVKwHIKNIY 899
                 5699*************************87777666 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00036      0.49      19      53 ..      58      92 ..      53      99 .. 0.88
   2 ?   -4.1   0.0       7.9   1.1e+04      50      81 ..     228     261 ..     220     276 .. 0.71
   3 ?   -2.2   0.0         2   2.8e+03      50      80 ..     868     898 ..     860     911 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrviglA 53
                r+ v+ ++AG GKtt+l++  + + a+g+r++ l+
  CTQ26609.1 58 RLGVVCAGAGFGKTTLLAQWHQQMVAQGERIAWLS 92
                5778999******************9**9998876 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 7.9
      AAA_30  50 iglAptgkaAkvLaeelg..ieastiakllkrlk 81 
                 ++l  ++  A++L+  ++  i+++ ia+l  +l+
  CTQ26609.1 228 VALPLSNHHAQRLQSVTEgwIAGMKIASLSAELQ 261
                 5666778888888876664568888888776665 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2
      AAA_30  50 iglAptgkaAkvLaeelgieastiakllkrl 80 
                 + l  +g++ k++a++l i a+t++  +k+ 
  CTQ26609.1 868 LQLIAEGQMNKEIARSLAISAETVKWHIKNI 898
                 5555677888999999999999999887665 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2    0.0003      0.42       8      38 ..     861     892 ..     859     897 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0003
      HTH_38   8 eeRe.eIerllaeGlslreIArrLgrspsTIs 38 
                 +eRe +I +l+aeG  ++eIAr L  s  T+ 
  CTQ26609.1 861 SERElQILQLIAEGQMNKEIARSLAISAETVK 892
                 5665479********************99985 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00038      0.52      12      39 ..      59      86 ..      53      94 .. 0.85
   2 ?   -3.4   0.0       7.9   1.1e+04     103     127 ..     151     176 ..     134     185 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00038
      AAA_19 12 vllvtaGpGtGKTrvlkhivallvelgg 39
                + +v aG+G GKT++l +  + +v++g+
  CTQ26609.1 59 LGVVCAGAGFGKTTLLAQWHQQMVAQGE 86
                6799*************99999998874 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.9
      AAA_19 103 eellivDEfqdvd.elqyrLlkallg 127
                   +li+D f  ++    y+ l  l +
  CTQ26609.1 151 DVYLIIDDFHVINdRGVYEALGYLIK 176
                 34899999999987888877776665 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       7.7   1.1e+04       8      18 ..     408     418 ..     407     419 .. 0.87
   2 ?    0.9   0.1      0.73     1e+03       4      13 ..     439     448 ..     437     460 .. 0.85
   3 ?   -1.2   0.1       3.5   4.8e+03       8      20 ..     565     577 ..     565     577 .. 0.86
   4 ?    1.6   0.0      0.44   6.1e+02       3      25 ..     642     664 ..     640     665 .. 0.87
   5 ?    8.8   0.2     0.002       2.8       3      26 .]     729     752 ..     727     752 .. 0.87
   6 ?    2.9   0.0      0.17   2.4e+02       7      24 ..     775     790 ..     769     792 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 7.7
       TPR_4   8 ArallalGdld 18 
                 A+ l++ Gd d
  CTQ26609.1 408 AQSLAEEGDID 418
                 88999***998 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.73
       TPR_4   4 llaLAralla 13 
                 +++LA+al++
  CTQ26609.1 439 QINLAWALAH 448
                 799****986 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.5
       TPR_4   8 ArallalGdldeA 20 
                 A+ +l +Gdl  A
  CTQ26609.1 565 AQCHLCQGDLGKA 577
                 78899****9877 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.44
       TPR_4   3 allaLArallalGdldeAralle 25 
                 ++  LAr +l+   + eA++lle
  CTQ26609.1 642 CYTYLARQALDNDMPYEAERLLE 664
                 6678999999999999******8 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.002
       TPR_4   3 allaLArallalGdldeAraller 26 
                 a l + r+lla+G++++A+ ll++
  CTQ26609.1 729 ASLSRSRLLLATGQAPQACVLLAE 752
                 567789**************9975 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.17
       TPR_4   7 LArallalGdldeArall 24 
                 L  al+  G  ++Ar+++
  CTQ26609.1 775 L--ALWNSGKTAAARTTF 790
                 4..5***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.39
# Mc/sec: 7145.34
//
Query:       CTQ26610.1  [L=277]
Description: 5-methylcytosine-specific restriction endonuclease B; e14 prophage [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-15   55.5   2.5    4.7e-15   55.5   1.3    1.7  2  HNH       HNH endonuclease
      1e-05   25.3   1.5    2.9e-05   23.8   0.1    2.2  2  HNH_5     HNH endonuclease
     0.0017   18.5   0.6      0.018   15.2   0.6    2.2  1  HNH_2     HNH endonuclease
     0.0091   15.9   0.0      0.021   14.7   0.0    1.6  1  HNH_4     HNH endonuclease


Domain annotation for each model (and alignments):
>> HNH  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.9   1.3e+04      14      22 ..      42      50 ..      35      55 .. 0.69
   2 !   55.5   1.3     1e-18   4.7e-15       1      46 [.     207     257 ..     207     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.9
         HNH 14 levdHiipi 22
                   d+ii++
  CTQ26610.1 42 VALDYIIER 50
                567899886 PP

  == domain 2  score: 55.5 bits;  conditional E-value: 1e-18
         HNH   1 CeyCgrkfhks.....ealevdHiipisqggaddieNlqllCksCHnkkhd 46 
                 Ce+Cg++  +      ++lev+H+ip+s +gad+i+N+++lC++CH+++h 
  CTQ26610.1 207 CERCGENAPFLingdtPYLEVHHVIPLSLSGADTISNCVALCPNCHRALHY 257
                 *****9877767799*********************************995 PP

>> HNH_5  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.25   1.1e+03      35      42 ..     206     213 ..     200     215 .. 0.74
   2 !   23.8   0.1   6.4e-09   2.9e-05      13      43 ..     225     255 ..     220     264 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.25
       HNH_5  35 lCkkCNqk 42 
                 +C++C ++
  CTQ26610.1 206 VCERCGEN 213
                 6****875 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 6.4e-09
       HNH_5  13 lseeHIiPeslGGkltisnlvtlCkkCNqkk 43 
                 l+  H+iP sl G  tisn+v+lC  C+  +
  CTQ26610.1 225 LEVHHVIPLSLSGADTISNCVALCPNCHRAL 255
                 6788***********************9876 PP

>> HNH_2  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.6     4e-06     0.018       2      64 ..     208     255 ..     207     259 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4e-06
       HNH_2   2 vitgiddp......s.lleaAHIiPwslssffndlilnrfeigrillekgstidspsNgllLspdiHklF 64 
                   +g ++p      + +le++H+iP+sls          +             d  sN   L+p++H++ 
  CTQ26610.1 208 ERCGENAPflingdTpYLEVHHVIPLSLS----------G------------ADTISNCVALCPNCHRAL 255
                 5577666677777666*********4443..........4............7999***********985 PP

>> HNH_4  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.8e-06     0.021      17      45 ..     223     251 ..     217     254 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.8e-06
                 ..SEEEESSTTTT---BSGGGEEEES-GG CS
       HNH_4  17 keydiDHilPrsrskdDsvsNkVLvlrda 45 
                   +++ H++P s+s  D++sN V  + ++
  CTQ26610.1 223 PYLEVHHVIPLSLSGADTISNCVALCPNC 251
                 5689******************9998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2049.29
//
Query:       CTQ26611.1  [L=30]
Description: hypothetical protein CH1034_130062 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 248.48
//
Query:       CTQ26612.1  [L=93]
Description: hypothetical protein CH1034_130063 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-13   48.8   0.0    7.8e-13   48.7   0.0    1.1  1  Pox_D5    Poxvirus D5 protein-like
    0.00018   21.3   0.1    0.00034   20.4   0.1    1.5  1  DUF5375   Family of unknown function (DUF5375)


Domain annotation for each model (and alignments):
>> Pox_D5  Poxvirus D5 protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   8.7e-17   7.8e-13      29      86 .]      25      85 ..       8      85 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 8.7e-17
      Pox_D5 29 eaYkafcekngykpvlskrtFqkrlkkilee...gfekkkkkkgqqpneyleyifiedlls 86
                 +Y+ +++++gy+++ls+++F+k+l+ +l+e   ++ek+++++g+q+n+ l +++++d+l+
  CTQ26612.1 25 GFYLVYMKAHGYRNALSLTMFGKGLSAMLKEyvlNYEKRHTNQGMQTNLVLREESNADWLP 85
                68*****************************8877************************86 PP

>> DUF5375  Family of unknown function (DUF5375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   3.8e-08   0.00034      34      59 ..       9      37 ..       2      54 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.8e-08
     DUF5375 34 sltlarleraietelegfyl...rqhgre 59
                 ltl+ le+ai+t legfyl   + hg +
  CTQ26612.1  9 LLTLDVLESAIATVLEGFYLvymKAHGYR 37
                69****************98222455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 779.17
//
Query:       CTQ26613.1  [L=348]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-22   78.6   0.4    2.2e-21   76.4   0.1    1.9  2  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase
  ------ inclusion threshold ------
      0.062   13.0   0.1       0.13   12.0   0.1    1.5  1  Mic1      Colon cancer-associated protein Mic1-like


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.1   2.4e-25   2.2e-21       3     209 ..      86     267 ..      84     292 .. 0.89
   2 ?    0.2   0.0      0.05   4.5e+02     180     206 ..     312     337 ..     275     346 .. 0.69

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 2.4e-25
                 -TT.S-EEE......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET... CS
       RVT_1   3 KkgpgsyRpisllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvptkl 101
                 Kk+ g+ R i  +    k+ +  ia++L +  + +++++ + +r+g ++ d     +++  ++ + k ++++D+ + F +++   + ++l + k+p ++
  CTQ26613.1  86 KKN-GKKREILAPRKFIKVTQYWIADHLLN--RLKIHSSCFSYRKGVGIKD-----NAY--NHVGMKFVANIDITDYFGTINKTMIKKCLLDNKIPISI 174
                 899.9*****9***************5555..578***********99977.....555..88899******************************665 PP

                 ......................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T........TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--B CS
       RVT_1 102 inliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkra..kgvtllrYaDDililskskeelqelleaveewlkesglki 198
                 +++i+                 + ++++  lpqG+++SP+++n +++++++++ + a   +++++rY DDi+++ +s+e++  l ++  + l++ g++i
  CTQ26613.1 175 VEVIS-----------------GLITYYGYLPQGAPTSPIISNAILHDFDESMCESAlhFDCVYTRYSDDITVSGNSREKVFLLTRVAAKLLERRGFSI 256
                 55554.................66699**************************9999999*************************************** PP

                 EGGG-EEE... CS
       RVT_1 199 npeKtklvlft 209
                 n+eKt++++++
  CTQ26613.1 257 NEEKTRILSTN 267
                 *******9644 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.05
                 HHHHHHHHHHHHHHTT--BEGGG-EEE CS
       RVT_1 180 lqelleaveewlkesglkinpeKtklv 206
                 l+ +l+ + + +k++g+k+ +eK +l+
  CTQ26613.1 312 LKGHLNYL-NSFKQYGFKFDHEKYQLI 337
                 33333333.334667777777776665 PP

>> Mic1  Colon cancer-associated protein Mic1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.4e-05      0.13      10      41 ..     316     347 ..     314     348 .] 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
        Mic1  10 leYlrslskaeikvehklyelliklLvenkef 41 
                 l+Yl+s +++  k++h+ y+l+i+ L++nk +
  CTQ26613.1 316 LNYLNSFKQYGFKFDHEKYQLIINELIKNKDI 347
                 58***************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 2944.22
//
Query:       CTQ26614.1  [L=149]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.032   14.2   0.0      0.058   13.4   0.0    1.4  1  HTH_45    Winged helix-turn-helix


Domain annotation for each model (and alignments):
>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.2e-06     0.058      35      66 ..      44      78 ..      41      90 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.2e-06
      HTH_45 35 llnkYLdmLvekgli...kkskekYvlTekGlell 66
                +++ Y d+L + g+i   +k+++ +++T +G e l
  CTQ26614.1 44 VMEDYFDKLKKIGYIeqvSKRNNLFSITPQGNEKL 78
                6899**********97768899*********8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1338.70
//
Query:       CTQ26615.1  [L=224]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.047   13.4   0.5          3    7.6   0.0    2.5  2  DUF2922   Protein of unknown function (DUF2922)
      0.076   12.9   0.0        5.3    7.0   0.0    2.5  2  VIT_2     Vault protein inter-alpha-trypsin domain
      0.098   12.7   2.1      0.088   12.8   0.6    1.7  2  DUF1043   Protein of unknown function (DUF1043)
       0.17   12.4   0.9          3    8.5   0.3    2.4  2  FliG_N    FliG N-terminal domain


Domain annotation for each model (and alignments):
>> DUF2922  Protein of unknown function (DUF2922)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.013        59      11      28 ..      76      93 ..      72      97 .. 0.87
   2 ?    7.6   0.0   0.00067         3      26      51 ..     197     222 ..     193     224 .] 0.87

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.013
     DUF2922 11 egktvtlsipnpkedlte 28
                ++ktv+ si+++k  l e
  CTQ26615.1 76 DNKTVSYSINKIKKHLEE 93
                79***********99987 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00067
     DUF2922  26 lteaeVkaaMdlIiakniFttkggdl 51 
                 l + e+k+  d I+ k+i++ k+g l
  CTQ26615.1 197 LGDKEIKSIIDRIVNKKIIQRKNGLL 222
                 6678****************999955 PP

>> VIT_2  Vault protein inter-alpha-trypsin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.018        83      15      40 ..       9      34 ..       3      41 .. 0.86
   2 ?    7.0   0.0    0.0012       5.3      32      63 ..     165     196 ..     151     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.018
       VIT_2 15 kaskvsacvlgaslgvtasltYyNdq 40
                ++ k+++ +lg   ++t+++  +N +
  CTQ26615.1  9 QSQKINSVILGSNNRTTLTQVVVNVN 34
                6789***************9888865 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0012
       VIT_2  32 asltYyNdqeqpvegvFvyPldekttvvgfea 63 
                 +s  + N ++  ++g+F y  d++++v+ ++ 
  CTQ26615.1 165 SSEDFKNSDQFLLNGAFKYCSDNNCSVISLDS 196
                 566799**********************9986 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6     2e-05     0.088      35     100 ..      21      90 ..       3     105 .. 0.80
   2 ?   -2.4   0.0         1   4.5e+03      39      57 ..     138     156 ..     135     157 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2e-05
     DUF1043  35 kakaeleeqkqeledHfaqsaelLetlaedyqk.LyqhlaksseeL...lpeleeqelfqqkkleekkae 100
                 +++++l++   ++++Hf +   l+e+l+e+ ++ L + +++s +++    p+++ ++  +++++++ k++
  CTQ26615.1  21 NNRTTLTQVVVNVNSHFVNQELLVEQLKEEIKDaLENEFSESDHNIllcYPNKKIDNKTVSYSINKIKKH 90 
                 678999999*********************98549999****9999555456666677777777776654 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1
     DUF1043  39 eleeqkqeledHfaqsael 57 
                 el+  +  l +Hf+ s++l
  CTQ26615.1 138 ELTLSQLTLISHFKISRKL 156
                 5566677788999988876 PP

>> FliG_N  FliG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.3   0.00066         3      42      91 ..      18      67 ..       4      79 .. 0.86
   2 ?    1.9   0.0     0.073   3.3e+02      82      98 ..     196     212 ..     189     219 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00066
                HTTXXHHHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHSHHHHHHH CS
      FliG_N 42 lksvskeeveaVleefleeleaqeylseggeeyarelLekalgeekaeel 91
                l+s ++ ++ +V+ + ++++ +qe l+e+ +e ++++Le+ ++e++ + l
  CTQ26615.1 18 LGSNNRTTLTQVVVNVNSHFVNQELLVEQLKEEIKDALENEFSESDHNIL 67
                56678999**********************************99877655 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.073
                 HHSHHHHHHHCHHHHXX CS
      FliG_N  82 algeekaeellerltae 98 
                 +lg+++++++++r++++
  CTQ26615.1 196 SLGDKEIKSIIDRIVNK 212
                 45666666666665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1100  (0.0613531); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1706.17
//
Query:       CTQ26616.1  [L=248]
Description: putative prophage CPS-53 integrase; CPS-53 (KpLE1) prophage (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-22   78.8   0.0    8.2e-22   77.8   0.0    1.5  2  Phage_integrase  Phage integrase family


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       0.3   5.3e+03      13      41 ..      11      36 ..       8      44 .. 0.69
   2 !   77.8   0.0   4.6e-26   8.2e-22       7     169 ..      72     230 ..      66     232 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.3
                     HCCGCHHHHHHHHHHHHHHHHT--HHHHT CS
  Phage_integrase 13 aaleeslkirdklllellyetGlRisEll 41
                     + l++   i++  +le + +  +R sE+ 
       CTQ26616.1 11 NVLHK---IEKHGALEKMRKARQRCSEVF 36
                     55555...777777778888888888875 PP

  == domain 2  score: 77.8 bits;  conditional E-value: 4.6e-26
                      HHHHHHHCCGCHHHHHHHHH...HHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTSBS CS
  Phage_integrase   7 everllaaleeslkirdkll...lellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaeksell 97 
                      e+  +l al++  ++ ++l+   ++ll+ tG+R+ El++  ++++dl+  ++ ++++++K+++++ vpls++al ll el   a     +  ++
       CTQ26616.1  72 ELPDFLRALDS--YASSRLVqvaTKLLMITGVRTIELRAALWQEFDLDYAIWEIPTERMKMRRSHLVPLSSQALDLLNELNIMA----GDYRYV 159
                      66666777777..5555555555********************************************************99998....8899** PP

                      SBET..TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHH.HHHHCC CS
  Phage_integrase  98 fask..rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssistt.qiYthv 169
                      f+ +  ++kp+s+ ++++++kr++       ++t+H +Rh++++ L e+g+    ++  l+H + +++  +Y+h+
       CTQ26616.1 160 FPGRndPNKPMSEASINQVIKRIGFG----GNVTGHGFRHTLSSVLHEQGYESAWIETQLAHVDKNSIlGTYNHA 230
                      ****99*****************998....4568*********************************99****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2003.80
//
Query:       CTQ26617.1  [L=78]
Description: hypothetical protein CH1034_130068 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-08   34.8   0.1    2.6e-08   34.1   0.1    1.4  1  Arm-DNA-bind_3  Arm DNA-binding domain


Domain annotation for each model (and alignments):
>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1   1.5e-12   2.6e-08      40      74 .]       5      39 ..       1      39 [. 0.93

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1.5e-12
  Arm-DNA-bind_3 40 GrypavslaeARkkarelraliaqGiDPaeekkae 74
                    G yp++ la+AR++++e+r+l+a+G++P+e +k++
      CTQ26617.1  5 GVYPTINLADARSRRDEARKLVAEGKNPSEVRKEQ 39
                    99**99*************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       986  (0.0549947); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 591.33
//
Query:       CTQ26618.1  [L=38]
Description: hypothetical protein CH1034_130069 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0082   16.5   0.0     0.0082   16.5   0.0    1.0  1  Arm-DNA-bind_3  Arm DNA-binding domain


Domain annotation for each model (and alignments):
>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.6e-07    0.0082      10      38 ..       7      38 .]       1      38 [] 0.74

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.6e-07
  Arm-DNA-bind_3 10 adsdkklprd.....GLglrvtpsGaktfvlryr 38
                    +++d  +p++      L l ++p+G+k++++ yr
      CTQ26618.1  7 KPKD--KPYTlgdgqSLSLLIEPNGSKSWRFLYR 38
                    3344..3443567899**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       185  (0.0103185); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 307.25
//
Query:       CTQ26619.1  [L=417]
Description: gamma-glutamylphosphate reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-21   75.3   2.2    1.7e-16   59.8   0.4    2.2  2  Aldedh         Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.094   12.1   0.0       0.18   11.2   0.0    1.4  1  DUF1487        Protein of unknown function (DUF1487)
       0.13   12.2   0.0       0.32   11.0   0.0    1.6  1  HTH_6          Helix-turn-helix domain, rpiR family
       0.28   10.8   1.8         44    3.7   0.0    3.8  5  MoCF_biosynth  Probable molybdopterin binding domain
       0.31   11.6   3.1        1.8    9.2   0.1    3.0  3  FlgT_N         Flagellar assembly protein T, N-terminal domai


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.4   4.7e-20   1.7e-16      37     296 ..       8     280 ..       2     299 .. 0.83
   2 !   15.1   0.1   1.7e-06    0.0061     377     461 ..     320     407 ..     318     408 .. 0.77

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 4.7e-20
                 HHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHSEEE..........EEEC........TT CS
      Aldedh  37 aAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaeklegev..........lpss........eg 117
                 aAk+a  + a l+ +e+ ++L+k+ad+le++ +++ ++ + +     a+   e +  +d l ++ + ++ ++ +v             +        +g
  CTQ26619.1   8 AAKAASWQLALLSSREKNQVLEKIADYLEAQTDDILRANAEDLAEARANGLSEAM--LDRLALTPARLSGIASDVrqvcnladpvG--QvidgglldSG 102
                 6777777999********************************9999988887655..45555544444444444433334444441..14446677689 PP

                 EEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT....TS-TTSEEE--SS.TCCHHHHHHH-TTESEEEE CS
      Aldedh 118 klalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea....glPkgvlnvvtgs.gsevgealvehpevdkvsf 211
                  ++  rr PlGv+g+I  ++   ++++  +  +l +GN+ +l+  +et  + ++ ++++++a    glP+ +++ +  +  + vge l  ++ +d++  
  CTQ26619.1 103 LRIERRRVPLGVIGVI--YEARPNVTVDVASLCLKTGNAAILRGGKETWRTNAATVKVIQQAlqecGLPAAAVQAIESPdRALVGEMLKMDKYIDMLIP 199
                 99999999********..89999********************99999877777666666655555**********7663788999999********** PP

                 ES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT- CS
      Aldedh 212 tGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakkl 296
                  G+    +   ++++    +v+    G  +++v e a++  a++ iv++ +     +C +++ llv+++i+d f+ +l +++++ 
  CTQ26619.1 200 RGGAGLHKLCREQST---IPVITGGIGVCHIFVDETAEIAPALKIIVNAKTQ-RPSTCNTVETLLVHRNIADTFLPALSKQMAES 280
                 ***999999999888...99***999**********************8876.5689*********************9999765 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.7e-06
                 EEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB-.-CGGGEES...-BSHHHHHHHTEEEEE CS
      Aldedh 377 vikfkdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfg.GvkqSglG...reggkegleeytevkt 461
                 v  + d +eai+   +     + ++ t+ l++a+r++++++   vy+N st+++     fg G          + +g+ gle+ t++k+
  CTQ26619.1 320 VKVVADMDEAIAHIREHGTQHSDAILTRTLRNANRFINEVDSSAVYVNASTRFTDGG-QFGlGAEVAVSTqklHARGPMGLEALTTYKW 407
                 677899********************************************9998888.6663443322222355566666666666665 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     5e-05      0.18      10      60 ..     229     280 ..     223     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5e-05
     DUF1487  10 ifedgDlnsalealves.lkePfaegavatvlveesirdefvervrsklkpl 60 
                 + e ++++ al+ +v++  + P  +++v t+lv+ +i+d f+  + +++ + 
  CTQ26619.1 229 VDETAEIAPALKIIVNAkTQRPSTCNTVETLLVHRNIADTFLPALSKQMAES 280
                 557789999*****9853789********************99999888764 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.8e-05      0.32      19      55 ..      29      67 ..      19      69 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.8e-05
                HHHHHHHHH-S---TT--HHHHHHH..TT--HHHHHHHH CS
       HTH_6 19 kkiaeyilaspdkaielsikalAka..aavSeativrfa 55
                +kia+y+ a+ d + +   ++lA+a   + Sea++ r+a
  CTQ26619.1 29 EKIADYLEAQTDDILRANAEDLAEAraNGLSEAMLDRLA 67
                69********************98622679****99997 PP

>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.6   2.2e+03      70     101 ..      39      71 ..      37     127 .. 0.76
   2 ?    3.7   0.0     0.012        44      17      68 ..     154     205 ..     133     208 .. 0.85
   3 ?   -1.1   0.1      0.37   1.3e+03      55      68 ..     210     224 ..     205     227 .. 0.72
   4 ?    2.9   0.0     0.022        78       5      35 ..     256     286 ..     253     290 .. 0.87
   5 ?   -0.8   0.1       0.3   1.1e+03      36      62 ..     320     346 ..     315     347 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.6
                    TT--HHHHHHHHHSEE-HHHHHHH.HHHHHHHC CS
  MoCF_biosynth  70 pdDvtpealaklfekelegfeeaf.rrvslkpg 101
                     dD+ ++  ++l e ++ g++ea+ +r++l p 
     CTQ26619.1  39 TDDILRANAEDLAEARANGLSEAMlDRLALTPA 71 
                    589999999999999999988876245555554 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.012
                    HHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHHHHHHHTS.SEEEEESS-SS CS
  MoCF_biosynth  17 tngpllaellkelgvevskytvvpDdeeeikeallaaleea.dviittGGtGp 68 
                    ++ ++++++l+e g+ +++++ +     +++ ++l+  +++ d++i  GG G+
     CTQ26619.1 154 ATVKVIQQALQECGLPAAAVQAIESPDRALVGEMLKM-DKYiDMLIPRGGAGL 205
                    5668999**************9999999999999888.5566********997 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.37
                    HTS.SEEEEESS-SS CS
  MoCF_biosynth  55 eea.dviittGGtGp 68 
                    +e+  + ++tGG+G+
     CTQ26619.1 210 REQsTIPVITGGIGV 224
                    555466699*****8 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.022
                    E-HHHHTTSSGBHHHHHHHHHHHTTSEEEEE CS
  MoCF_biosynth   5 vGdellsgkieDtngpllaellkelgvevsk 35 
                    v + l++++i Dt  p l+++++e gv++++
     CTQ26619.1 256 VETLLVHRNIADTFLPALSKQMAESGVTLHA 286
                    556678999******************9876 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.3
                    EEEE-SSHHHHHHHHHHHHHTSSEEEE CS
  MoCF_biosynth  36 ytvvpDdeeeikeallaaleeadviit 62 
                    ++vv+D  e+i++  +   +++d+i+t
     CTQ26619.1 320 VKVVADMDEAIAHIREHGTQHSDAILT 346
                    789********9999777788899998 PP

>> FlgT_N  Flagellar assembly protein T, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.3      0.23   8.4e+02      14      33 ..      46      64 ..      34      74 .. 0.82
   2 ?    9.2   0.1    0.0005       1.8       6      45 ..     136     177 ..     134     184 .. 0.81
   3 ?   -1.0   0.0      0.76   2.7e+03      67      85 ..     304     322 ..     291     324 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.23
      FlgT_N 14 nd.diAreqAredAlkqAlly 33
                n+ d+A   Ar++ l++A+l+
  CTQ26619.1 46 NAeDLAE--ARANGLSEAMLD 64
                3348999..*********987 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0005
      FlgT_N   6 qGeAsIinnd.diAre.qAredAlkqAllyagaqvgsisslq 45 
                 +G+A+I+ ++ ++ r+ +A+ ++++qAl+  g+ +  +++++
  CTQ26619.1 136 TGNAAILRGGkETWRTnAATVKVIQQALQECGLPAAAVQAIE 177
                 8*****887757755416899***********9988887765 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.76
      FlgT_N  67 lvsEevsdnlltvtvradi 85 
                 +  E++ d++l++ +++ +
  CTQ26619.1 304 VKAEQYDDEYLSLDLNVKV 322
                 567999*******999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3086.28
//
Query:       CTQ26620.1  [L=367]
Description: gamma-glutamate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-44  150.2   1.7    9.3e-44  149.8   1.7    1.1  1  AA_kinase  Amino acid kinase family
    1.9e-20   72.6   0.0    5.3e-20   71.1   0.0    1.8  1  PUA        PUA domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   1.7     1e-47   9.3e-44       2     240 ..       6     234 ..       5     235 .. 0.95

  Alignments for each domain:
  == domain 1  score: 149.8 bits;  conditional E-value: 1e-47
                 EEEEEE-TTCCCCTCC....HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHT CS
   AA_kinase   2 rvVvKlGGssltdkee....aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaa 96 
                 ++VvKlG s+lt +++    a + +l++q+a+l+  g+++v+V++g ++++g  +l  g+++ +++            +a++++la++g++ + +l+++
  CTQ26620.1   6 TLVVKLGTSVLTGGSRrlnrAHIVELVRQCAQLHAMGHRIVIVTSG-AIAAGREHL--GYPELPAT------------IASKQLLAAVGQSRLIQLWEQ 89 
                 79**********88888*****************************.999999999..99999988............7888***************** PP

                 THGEEEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCT CS
   AA_kinase  97 glpavglsaaaldateagrdegsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpd 195
                 +++ +g+++ ++++t+a+    +d+++  + +++++ ll++ +vpv+++++++ + +   +g++D ++al A + gAdkl++ltd +G+++adp+ +p 
  CTQ26620.1  90 LFSIYGIHVGQMLLTRADM---EDRERFLNARDTLRALLDNSIVPVINENDAVATAEI-KVGDNDNLSALAAILAGADKLLLLTDQPGLFTADPRSNPQ 184
                 *******************...***************************997777765.4*************************************** PP

                 TCECCEE.EHHHCHH.....CSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 196 arllpei.svdeaee.....saselatgGmkvkhpaalaaarrggipvvIt 240
                 a+l++ +  +d+a+      s s+l+tgGm +k++aa  a+r g i+++I+
  CTQ26620.1 185 AELIKDVyGIDDALRaiagdSVSGLGTGGMGTKLQAADVACRAG-IDTIIA 234
                 *******999999999****************************.***996 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0     6e-24   5.3e-20       1      74 []     276     350 ..     276     350 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 6e-24
                 CEEEE-HHHHHHHHT.T-EEEGGGEEEEETT--TTSEEEEEETTSCEEEEEEESS-HHHHHHHCTSEEEEEEEEE CS
         PUA   1 grvvvddgAvkalls.gasLlapGvvevegdfeegdvVaivdedgelvavGlanysseelakikggksveiervl 74 
                 g+++vd+gA +a+l+ g+sLl++G+  v g+f++g+v++i + +g+ +a G+++y+s+ l+ i+g++s++i+++l
  CTQ26620.1 276 GELTVDAGATQAILErGSSLLPKGIKIVSGNFSRGEVIRIRNSEGRDIAHGVSRYNSDALRLIAGQHSQQIDAIL 350
                 6899*******************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2717.73
//
Query:       CTQ26621.1  [L=350]
Description: outer membrane phosphoporin protein E [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.1e-143  476.9  23.4   4.6e-143  476.7  23.4    1.0  1  Porin_1   Gram-negative porin
    2.5e-18   66.9  31.6    2.6e-18   66.8  30.8    1.4  1  Porin_4   Gram-negative porin
    0.00031   19.7   0.4     0.0019   17.1   0.0    2.1  2  BBP2_2    Putative beta-barrel porin 2
  ------ inclusion threshold ------
       0.19   11.8   0.9         16    5.6   0.1    2.5  2  Barstar   Barstar (barnase inhibitor)


Domain annotation for each model (and alignments):
>> Porin_1  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  476.7  23.4    1e-146  4.6e-143       1     340 []      27     350 .]      27     350 .] 0.98

  Alignments for each domain:
  == domain 1  score: 476.7 bits;  conditional E-value: 1e-146
                 CTTEEEEEEEEEEEEEEEESTTSTCEEEEEEEEEEEEEEESSSSEEEEEEEEEEEESSSBTTCTTTCEEEEEEEEEEETTTEEEEEEEEE-TTHHHHCT CS
     Porin_1   1 KdgnkldlygkvtklhyfsdeksedgddtyariGfKGetqindqLtgygqwEyevkvngtegesaqsktrlaFaGLkfgevGsldyGrnygvvydveaw 99 
                 K++nkld+ygk++++hyfsd +s+dgd+ty+r+G+KGetqind+Ltgyg+wE e+++n+te++ +++ktrlaFaG k++++Gs+dyGrn g++ydveaw
  CTQ26621.1  27 KNANKLDVYGKIKAMHYFSDYDSKDGDQTYVRFGIKGETQINDDLTGYGRWESEFSGNKTESD-SSQKTRLAFAGVKLKNYGSFDYGRNLGALYDVEAW 124
                 89***********************************************************66.8889******************************* PP

                 TTTSSSSSSCTSSCTTSTTTSEECCEEEEEESCCCCTSTTEEEEEEEE--B-TS....SSTTT-BESEEEEEEEEEETT..EEEEEEEEEEEE-CHHC. CS
     Porin_1 100 tdvlpefggdtvaqtdnfmtkrangvatYrntdFfGlvdglnfalqyqgknedtstnnrnlkksngdgygvslsYeveGfalsvagayarsdrtakqkl 198
                 td++pefggd+ aqtdnfmtkra+g+atYrntdFfGlvdgl+++lqyqgkne      r++kk+ngdg+g+ lsY+++G++++v++ay++sdrt++q+l
  CTQ26621.1 125 TDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGLVDGLDLTLQYQGKNEG-----REAKKQNGDGVGTLLSYDFGGSDFAVSAAYTSSDRTNDQNL 218
                 **************************************************988.....799************************************96 PP

                 .....TSSCSSTSEEEEEEEEEEEEETTEEEEEEEEEECSESEEEEEEEESEEEEEEEEEEE-BTTSEEEEEEEEEEEEECETTSTCCEEEEEEEEEEE CS
     Porin_1 199 elkseakllgngkkaevwalglkYdanniylaaaYaetrnatlvgasgianktqnlevvaqyqfdfGlrPsiaYvqskgkdlegkkgdndlvkyvdvGa 297
                        ++g+g kae+wa+glkYdanniyla++Y+etr++t+++  g+ank+qn+e+vaqyqfdfGlrPs++Yv skgkd+eg +g++dlv+y+dvG 
  CTQ26621.1 219 ------LARGQGSKAEAWATGLKYDANNIYLATMYSETRKMTPIS-GGFANKAQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEG-VGSEDLVNYIDVGL 309
                 ......56789*******************************998.9*************************************.************** PP

                 EEECCSSEEEEEEEEEE-S-TTSSCCTSSTSC-EEEEEEEEEE CS
     Porin_1 298 tYyFnKnmsayVdykinlldkdddkelgistddivavglvyqF 340
                 tYyFnKnm+a+Vdykin+l++d+  +lgi++ddiva+g++yqF
  CTQ26621.1 310 TYYFNKNMNAFVDYKINQLKSDN--KLGINDDDIVALGMTYQF 350
                 ***********************..79***************9 PP

>> Porin_4  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8  30.8   5.8e-22   2.6e-18       2     305 ..       8     324 ..       4     333 .. 0.77

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 5.8e-22
     Porin_4   2 laalaaaAgaA.aAqs.......sVtlyGsidagvayvdgsatgssadgatgfdsgsrigftgsedldlGlglkasfeleagdngagtsg....arqay 88 
                 l ++ ++A+ A +A++       ++++yG i a  + +d        d+++g ++ +r+g++g +++++ l+   ++e e+++n  + s+     r a+
  CTQ26621.1   8 LMMMGFVASTAtQAAEvynknanKLDVYGKIKAMHYFSDY-------DSKDGDQTYVRFGIKGETQINDDLTGYGRWESEFSGNK-TESDssqkTRLAF 98 
                 33333667777688778***************99998773.......34445556689**************9999999975532.33334556***** PP

     Porin_4  89 vglsg.gfGkvtlGrqdgafdeagvdlafesgsladtgtalsgvsgsagfdsrdsnsiiyyspk.....fgGftagasyafgeddntnglagsvagdsd 181
                 +g++  ++G++++Gr+ ga++++    ++ +  ++++ +     + ++ f + ++ +++ y+++      +G+ ++++y+ ++ +         +++++
  CTQ26621.1  99 AGVKLkNYGSFDYGRNLGALYDVEAWTDMFPE-FGGDSS----AQTDN-FMTKRASGLATYRNTdffglVDGLDLTLQYQGKNEG--------REAKKQ 183
                 **********************9995554333.222211....22223.334444555445544475556688888888633333........335556 PP

     Porin_4 182 dndafglgagyafggvglavaaaysqgdneada.........dldawglgasvslggfklgasyadaendaaaaa...adadlygvgasytvga.ltvg 267
                 + d++g  ++y+fgg ++av+aay+++d ++d+         + +aw+ g +++ +++ l   y+++++ ++ ++   ++a+++++ a+y+++  l+ +
  CTQ26621.1 184 NGDGVGTLLSYDFGGSDFAVSAAYTSSDRTNDQnllargqgsKAEAWATGLKYDANNIYLATMYSETRKMTPISGgfaNKAQNFEAVAQYQFDFgLRPS 282
                 899**********************9999999999******************************9999999987899**************6537889 PP

     Porin_4 268 aay..gnydd..agandadatsyglgatYnLskrtdlyaeya 305
                 ++y  ++++d    ++++  + + +g tY ++k++++++ y+
  CTQ26621.1 283 LGYvlSKGKDieGVGSEDLVNYIDVGLTYYFNKNMNAFVDYK 324
                 99955555669656777778999***************9996 PP

>> BBP2_2  Putative beta-barrel porin 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.045     2e+02      57     114 ..      30      90 ..      12     117 .. 0.67
   2 !   17.1   0.0   4.3e-07    0.0019     320     378 ..     291     349 ..     243     350 .] 0.81

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.045
      BBP2_2  57 HaLeldlrgsltry...sdnsdedrpdfnveargrlDvtrdtrlngelgyeldredrsspn 114
                 ++L+++ + +   y    d +d d++ ++ +++g   +++d++  g  + e++ +++ s +
  CTQ26621.1  30 NKLDVYGKIKAMHYfsdYDSKDGDQTYVRFGIKGETQINDDLTGYGRWESEFSGNKTESDS 90 
                 4444444445455576656678888888999999999999988877777776654444433 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 4.3e-07
      BBP2_2 320 rdyqgidrddkeysaeagltYklnRnlalkasyryekldSnvsgadyeanvvgvgvrvq 378
                 +d +g++ +d +  + +gltY++n+n++  ++y+ ++l+S+++    +++ v +g++ q
  CTQ26621.1 291 KDIEGVGSEDLVNYIDVGLTYYFNKNMNAFVDYKINQLKSDNKLGINDDDIVALGMTYQ 349
                 56789999***********************************9999999999999988 PP

>> Barstar  Barstar (barnase inhibitor)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.011        50      27      37 ..     111     121 ..     106     131 .. 0.94
   2 ?    5.6   0.1    0.0037        16      22      37 ..     308     323 ..     304     327 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.011
     Barstar  27 fGrNlDALdDc 37 
                 +GrNl AL+D+
  CTQ26621.1 111 YGRNLGALYDV 121
                 9*********6 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0037
     Barstar  22 gfPdyfGrNlDALdDc 37 
                 g+  yf +N++A++D+
  CTQ26621.1 308 GLTYYFNKNMNAFVDY 323
                 6889**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2696.87
//
Query:       CTQ26622.1  [L=153]
Description: putative peptidase lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-23   82.6   0.0    2.2e-23   82.3   0.0    1.1  1  NLPC_P60       NlpC/P60 family
  ------ inclusion threshold ------
      0.011   15.9   0.0        2.4    8.2   0.0    2.4  3  Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX


Domain annotation for each model (and alignments):
>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.0   2.5e-27   2.2e-23       1     105 []      26     130 ..      26     130 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 2.5e-27
                 T-BB-TT--BTTEB-HHHHHHHHHHTT.T----SSHHHH.CCCSEE..EEGGG--TTEEEEESGTGGESEEEEEEETTEEEEEE.TTEEEEEETTSTTB CS
    NLPC_P60   1 gkpYrwGGkspsgfDCsglvryafaka.gielprssgeq.eaagkkkeiskselkrGDLvffktkkgisHvgiYlgngkmlhas.sekvsvsslsekyw 96 
                 g+pY+wGG+++sg+DCsg+v  ++++  ++ + r + ++  ++g +  + k++l++GDLvff+t     Hvg Y  + ++lhas s++v  ssl+++yw
  CTQ26622.1  26 GTPYEWGGTEQSGVDCSGFVWRTLKDRfNLPMERITTRElLHMGVR--VNKRDLRPGDLVFFRT-RAGMHVGFYDTDHNFLHASsSQGVMRSSLDNPYW 121
                 89************************99*****9877763666666..****************.9999***************9************** PP

                 HSCEEECCE CS
    NLPC_P60  97 kkrllgvrr 105
                 ++ + ++rr
  CTQ26622.1 122 ESAFYQARR 130
                 ***999886 PP

>> Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00027       2.4      90     131 ..      22      62 ..       8      75 .. 0.80
   2 ?    4.9   0.0    0.0028        25       2      32 ..      77     106 ..      76     113 .. 0.91
   3 ?    2.7   0.1     0.014   1.2e+02      32      86 ..      90     146 ..      85     152 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00027
  Peptidase_C92  90 lrrlgkpYdfgFeleddrlYCsklVakaykealgikvktvel 131
                        g+pY++g   e++ + Cs +V++  k + ++ ++++++
     CTQ26622.1  22 HTWQGTPYEWG-GTEQSGVDCSGFVWRTLKDRFNLPMERITT 62 
                    556799*****.899**************9998887776654 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0028
  Peptidase_C92   2 lekGdiifqtsraslseainpatasefkHvg 32 
                    l++Gd++f ++ra +   + + t  +f H++
     CTQ26622.1  77 LRPGDLVFFRTRAGMHVGFYD-TDHNFLHAS 106
                    789*************99999.999999985 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.014
  Peptidase_C92  32 givvgeegderlvveaaakegvrvtpLseflarrssiavyrlkea..ltaeqrqkaa 86 
                    g+ vg  ++++  ++a+ ++gv  ++L++   ++  ++ +rl ++  ++ +  +++ 
     CTQ26622.1  90 GMHVGFYDTDHNFLHASSSQGVMRSSLDNPYWESAFYQARRLPKEynAQITMNSDTL 146
                    666666666677789999999999999888777888888888877444444445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1259.60
//
Query:       CTQ26623.1  [L=289]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-23   81.6  37.4    4.6e-12   46.3  18.9    2.3  2  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1  10.5   9.9e-15   1.8e-10       8     136 ..      15     138 ..      10     139 .. 0.94
   2 !   46.3  18.9   2.6e-16   4.6e-12       2     136 ..     150     281 ..     144     282 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 9.9e-15
        EamA   8 llaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkk.tsasnaslitslePvft 105
                  l +l+w++++++++++l + sp++l+++rfl+a ++l ++a +++++l  + +   l  +++gl+ +  + +++f a+ + ++++ ++ i+ ++P++t
  CTQ26623.1  15 ALFVLLWGSAAIFTRWGLDNASPMALLVFRFLVALVALAPLAIVRRRWL--PAPGTRLQTAVTGLMLIGGYSVCYFEAMANgVTPGLIATIMGIQPILT 111
                 577899*******************************************..888888999******************98747999************* PP

        EamA 106 lilsvlllgekltlkqllgivlillGvllil 136
                 l+    +   +l+ + l g++l+l+G++l++
  CTQ26623.1 112 LC----VVERRLQGRRLSGLLLALAGLVLLV 138
                 *9....779********************97 PP

  == domain 2  score: 46.3 bits;  conditional E-value: 2.6e-16
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsl 100
                  gil+al+a l++ ++++ +k+  ++  p  ++ +++ ++  l+l+ia++++ ++   +   ++ +l+lgll +v+a+ll++ +l+ ++  +++ +++l
  CTQ26623.1 150 VGILFALAALLLMTFGALWQKR--SRQAPADVLPLQYAVSLGLCLLIAPVSGFRF-TVNAGLIIPVLFLGLLISVVAQLLLYRLLSAGNIVTVTSLFYL 245
                 59*******************9..5999999999*********************.8888889999********************************* PP

        EamA 101 ePvftlilsvlllgekltlkqllgivlillGvllil 136
                 +P++t++l +lllg +l    ++g++ i+ G++l++
  CTQ26623.1 246 VPAITALLDYLLLGNRLPAAAMIGMMAIVGGIVLVF 281
                 **********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 2196.71
//
Query:       CTQ26624.1  [L=221]
Description: HAD hydrolase, family IB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-34  119.4   0.0    2.8e-34  119.2   0.0    1.0  1  HAD        haloacid dehalogenase-like hydrolase
    6.4e-06   26.6   0.1    9.6e-05   22.8   0.1    2.0  1  Hydrolase  haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.083   12.4   0.0       0.11   11.9   0.0    1.2  1  DUF2608    Protein of unknown function (DUF2608)


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.0   4.7e-38   2.8e-34       2     186 ..       7     188 ..       6     190 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 4.7e-38
         HAD   2 lfDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpklldpgalellaahra 99 
                 +fD+D TL++gds +++ +f++r+g       l+++++l   +++++++ a++ +l++a lag +  +++a ++r v+e+i+p+++ p+a el+++ ra
  CTQ26624.1   7 IFDLDNTLIQGDSSTVWSQFMVREGLATQKGYLAREARLMADYDRGEMNIADYVALIQAPLAGIPkSDVDALVARCVREAILPRVY-PQAWELIRRLRA 104
                 7****************************************************************999999*************65.************ PP

         HAD 100 aGdrvvvvSgglrplvepllaelgadevlatelevdd.rltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpl 186
                 +G +  ++S++ + lv++++a+l +d+ l+ +++ +d  ++ge  + g p++++gkva+l++w +a+++ + +  v +y+Ds++Dlpl
  CTQ26624.1 105 EGEQMLIISASVSLLVQAVAAALEIDQALGIDVAMVDgGYSGE--ITGIPSYQQGKVARLAQWREAHPQYDGE--VTFYTDSINDLPL 188
                 *******************************************..*****************99999998876..9***********8 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   1.6e-08   9.6e-05       5     209 ..       7     192 ..       4     193 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.6e-08
                 EEESBTTTBCHH..HHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHH CS
                 xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   5 vfDkdGTLttge..psvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtva 101
                 +fD+d+TL++g    +  +++v+                 g    a  k+     ++  +      y +g+    +          a  +a  +g    
  CTQ26624.1   7 IFDLDNTLIQGDssTVWSQFMVRE----------------GL---ATQKGYLAREARLMA-----DYDRGEMNIADYV--------ALIQAPLAGIPKS 73 
                 899999999999444444444444................22...223333333344455.....5555555555555........4444444444444 PP

                 HHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.......GGGE.SEEEEHHCESSTTTSHHHHHHHHHHHT....S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
   Hydrolase 102 llqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.......ddyf.daviasdietvakpspegkvaaireLq....g 188
                  ++a + + +  a   +v+p a e++++L+a g ++ +++ + +  ++++a  l        d ++ d+ ++++i+++    ++gkva + + +     
  CTQ26624.1  74 DVDALVARCVREAILPRVYPQAWELIRRLRAEGEQMLIISASVSLLVQAVAAALEidqalgiDVAMvDGGYSGEITGIPS-YQQGKVARLAQWReahpQ 171
                 44444444444444446***************************999999988887555555444456666666666443.699999999999877776 PP

                 TGGGEEEEESSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 189 kpeevamVGDgvnDaaalaaA 209
                    ev +  D++nD++    A
  CTQ26624.1 172 YDGEVTFYTDSINDLPLCLHA 192
                 6889***********977666 PP

>> DUF2608  Protein of unknown function (DUF2608)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.9e-05      0.11      17      35 ..       2      20 ..       1      57 [. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
     DUF2608 17 entLvvfDiDdtLltstea 35
                 ntL +fD+D+tL++ ++ 
  CTQ26624.1  2 GNTLTIFDLDNTLIQGDSS 20
                59************98864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1630.62
//
Query:       CTQ26625.1  [L=120]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 990.98
//
Query:       CTQ26626.1  [L=38]
Description: Putative transcriptional regulator (LysR familiy) (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        97  (0.00541023); expected 358.6 (0.02)
Passed bias filter:                       84  (0.00468515); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 295.83
//
Query:       CTQ26627.1  [L=294]
Description: Phosphonate ABC transporter, permease protein PhnE [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-07   30.2  10.1    3.4e-07   30.2  10.1    2.1  2  BPD_transp_1     Binding-protein-dependent transport system i


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   6.3       0.3   5.4e+03     154     175 ..      80     108 ..      27     122 .. 0.51
   2 !   30.2  10.1   1.9e-11   3.4e-07      14     182 ..     124     280 ..     106     283 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.3
  BPD_transp_1 154 s.......nggvlalviavlllnlvadil 175
                           +g++la+v+a  l  +v+ +l
    CTQ26627.1  80 PfgyyftqIGVTLAIVFAGTLTATVLALL 108
                   13333333222222222222222222222 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 1.9e-11
  BPD_transp_1  14 kkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppi 110
                   ++l  l+r+l++vl+++ + ++++++v       ++g + l+++++++++ +++  ++++++ ++++++  +  +a Ga+  q  r  ++ +++p++
    CTQ26627.1 124 GTLALLMRRLFDVLRGIDMAIWGLIFV------RAVGLGPLAGVLAIIMQDTGLLGRLYAEGHEAVDRSPGRGLTAVGANGLQKHRFGIFTQSFPTF 214
                   4678899********************......**************************************************************** PP

  BPD_transp_1 111 itglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                   +++ ++++ ++   a++l f+g++   g  l+ a++++  ++     v ++++++++++ ++d l ++l +r
    CTQ26627.1 215 LALSLYQIESNTRSAAVLGFVGAG---GIGLIYAENMRLWNWDV---VMFITLLLVAVVMIMDTLSAWLRRR 280
                   **********************55...55588889999998766...7777777777778888888887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2296.36
//
Query:       CTQ26628.1  [L=290]
Description: putative inner membrane permease of ABC transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-13   49.7  10.9    3.6e-13   49.7  10.9    1.7  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.49   10.3   2.5       0.65    9.9   0.0    2.4  3  Herpes_US9    Alphaherpesvirus tegument protein US9


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.5     0.028   2.6e+02     134     171 ..      83     119 ..      47     122 .. 0.63
   2 !   49.7  10.9     4e-17   3.6e-13       2     171 ..     114     277 ..     109     285 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.028
  BPD_transp_1 134 wpGlgtllleailgydyseisnggvlalviavlllnlv 171
                   w G  +++  ++++  +++++ +++l++v++  ++ ++
    CTQ26628.1  83 WWGYRLPIQLPLIWETLQLAL-ASTLVAVAIATVFAFL 119
                   445555566666666666666.5555555555555554 PP

  == domain 2  score: 49.7 bits;  conditional E-value: 4e-17
  BPD_transp_1   2 illGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   +++++laa    +  +++ ++r+l+ +l+++P +++a+++v       ++g +++p++++l+l++++  + ++++a++s +   v+   a+Gas+ q
    CTQ26628.1 114 TVFAFLAAnnAWSPAPVRFAIRVLVAFLRTMPELAWAVIFV------MAFGIGAIPGFLALMLHTVGSLTKLFYEAVESAQNKPVRGLAACGASPLQ 204
                   6899999999999****************************......99************************************************ PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlv 171
                    +r  + P+++p +++  ++++ +++  +++l ++g++ G+g+ l++ i    y++ s +++l ++++v +l  +
    CTQ26628.1 205 KIRFALWPQVKPLFLSYGFMRLEINFRSSTILGLVGAG-GIGQELMTNIKLDRYDQVS-ITLLLIILVVSALDML 277
                   ************************************76.7***************888.6666666666666555 PP

>> Herpes_US9  Alphaherpesvirus tegument protein US9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   7.3e-05      0.65      21      57 ..      12      47 ..       7      51 .. 0.72
   2 ?   -3.4   0.4         1   9.2e+03      37      49 ..     109     121 ..     105     124 .. 0.64
   3 ?   -1.8   0.0      0.34     3e+03      37      46 ..     264     273 ..     254     285 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 7.3e-05
  Herpes_US9 21 yqsklrrRkkrtfCvitliivllvAvlsaa.FalGall 57
                yq++  r k+ + C  +l+  l +A  saa F    l+
  CTQ26628.1 12 YQQVRSRQKRDAVCWSLLLLALYFAAGSAAeF--NLLT 47
                4555555566689************9998734..4454 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1
  Herpes_US9  37 tliivllvAvlsa 49 
                  + i  ++A l+a
  CTQ26628.1 109 AVAIATVFAFLAA 121
                 4556667777766 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.34
  Herpes_US9  37 tliivllvAv 46 
                 +l+i+l+v  
  CTQ26628.1 264 LLLIILVVSA 273
                 3455555542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2315.46
//
Query:       CTQ26629.1  [L=327]
Description: Phosphonate ABC transporter, periplasmic phosphonate binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-49  167.5   0.0    4.5e-49  167.2   0.0    1.0  1  Phosphonate-bd   ABC transporter, phosphonate, periplasmic su
     0.0029   17.6   0.3     0.0086   16.0   0.0    1.9  2  NMT1             NMT1/THI5 like
     0.0064   15.9   0.0      0.017   14.5   0.0    1.8  2  SBP_bac_3        Bacterial extracellular solute-binding prote
  ------ inclusion threshold ------
      0.038   14.2   0.0      0.079   13.2   0.0    1.5  1  Peptidase_M99_C  C-terminal domain of metallo-carboxypeptidas


Domain annotation for each model (and alignments):
>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.2   0.0     1e-52   4.5e-49       2     233 ..      50     303 ..      49     313 .. 0.88

  Alignments for each domain:
  == domain 1  score: 167.2 bits;  conditional E-value: 1e-52
                     EE--SS-HHHHHHHHHHHHHHHHHHHSSEEEEE--SSHHHHHHHHHTTS-SEEE.--HHHHHH..HHHHS-EEEEEEEEE.TT--SEEEEEEEEE CS
  Phosphonate-bd   2 gvlPsespaelkeayqpladyLseelGvevelvvatdyaavvealragqvDiaf.lgplayvq..ardqagveplatrvr.sdGsasyrsviivr 92 
                     g+l  +++ +   + q++ ++L +el v+ +l+  +dy++v+++l  g+vD+++ ++p++y+   ++++++v+ +++ v+ +d s++y+sv+iv+
      CTQ26629.1  50 GILGGQNATQQIGDNQCVKAFLDKELNVDTKLRNSSDYSGVIQGLLGGKVDVVLsMSPSSYASvyLNNPKAVDIVGIAVDdKDQSRGYHSVVIVK 144
                     6667777777778899***********************************997478999998435677799*******9777799********* PP

                     TTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--HH....HHSSEE.EE--HHHHHHHHHTTSSSEEEEEHHHHHHHH.......... CS
  Phosphonate-bd  93 adsdiqsledLkgktiafvspsStsGylvpaalLvkeagldpe....ddfsev.fsgshdaavlavlsgdadaaavsadaledlv.......... 172
                     ads++++l+dLkgk ++f++p+StsGyl+p + + +++g + +    + fs+v fsg+h++ +l vl+g++  a+++a+ + d+           
      CTQ26629.1 145 ADSPYKTLDDLKGKAFGFADPDSTSGYLIPNHAFKEKFGGNADnkynNTFSSVtFSGGHEQDILGVLNGQFAGAVTWASMVGDYNtgyttgafnr 239
                     **********************************99999888855555799999************************99999998898888888 PP

                     ...HH-HHHHTTEEEEEEEEEEE--EEEEETTS-HHHHHHHHHHHHH---SHHHHHHHHHT.TEE CS
  Phosphonate-bd 173 ...aegpedkdelrviassppipndpvvvrkelseelkekiqdallslaeteegkklleal.gie 233
                         ++p+ ++++r+i++sp+ipn p++v+++l++++k+k+ +a  +l+ te++   ++a+ g++
      CTQ26629.1 240 lirMDHPDLMKQIRIIWQSPLIPNGPILVSNALPADFKAKVVAAVKKLD-TEDHACFIKAMgGTQ 303
                     8887779999**************************************9.577777777774444 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.56   2.5e+03     195     215 ..      26      46 ..      17      47 .. 0.84
   2 !   16.0   0.0   1.9e-06    0.0086      19     100 ..      75     164 ..      70     199 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.56
                 HHHHHHHHHHHHHHHHHSHHH CS
        NMT1 195 vkkFlrAlkkGyeyalahPee 215
                 ++++++ +  ++++a+a+P+e
  CTQ26629.1  26 LSAMVAGMMMAWQAAAAQPKE 46 
                 567788888999*****9997 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.9e-06
                 TTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHH....HHHHTT--EEEEEEEE-S-....-EEEEEECCC--SSGGGGTTSEEEE-S CS
        NMT1  19 eGldVeivepadpsdatelvasgkadfgvsyqesll....aarakglpvvsvaallqep....lsglivlkdsgikspkDLkGkrigyvg 100
                  ++d ++   +d s +++ +  gk+d+ +s ++s +    +   k +++v +a   + +     s +iv++ds+ k++ DLkGk  g+  
  CTQ26629.1  75 LNVDTKLRNSSDYSGVIQGLLGGKVDVVLSMSPSSYasvyLNNPKAVDIVGIAVDDKDQsrgyHSVVIVKADSPYKTLDDLKGKAFGFAD 164
                 344458888999**************99998887663322555577777777654333312225679********************987 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.9e-06     0.017      33     127 ..      72     175 ..      67     233 .. 0.79
   2 ?   -3.5   0.0       1.3   5.8e+03     105     120 ..     273     288 ..     266     298 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.9e-06
                 HHHCT-EEEEEE-.SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETT............SHGTCCHSSCGCGTTSEEE.EET CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxx.xxx RF
   SBP_bac_3  33 akrlgvkvefvpv.swdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkd............askissiksladLkgkkvg.vqa 117
                  k+l+v++++++  +++++i++l  gkvD++    +++p   + v + +p  +  ++++v +kd            a  +s +k+l+dLkgk  g +  
  CTQ26629.1  72 DKELNVDTKLRNSsDYSGVIQGLLGGKVDVVL---SMSPSSYASVYLNNPKAVDIVGIAVDDKDqsrgyhsvvivkA--DSPYKTLDDLKGKAFGfADP 165
                 689*********88****************97...68999999*****************97668999999999642..57788888*****9985555 PP

                 TSHHHHHHHH CS
                 xxxxxxxxxx RF
   SBP_bac_3 118 gstaeellke 127
                 +st+  l+ +
  CTQ26629.1 166 DSTSGYLIPN 175
                 6776655544 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.3
                 CGCGTTSEEEEETTSH CS
                 xxxxxxxxxxxxxxxx RF
   SBP_bac_3 105 ladLkgkkvgvqagst 120
                 +ad+k k v++++   
  CTQ26629.1 273 PADFKAKVVAAVKKLD 288
                 5677777777776544 PP

>> Peptidase_M99_C  C-terminal domain of metallo-carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.8e-05     0.079       5      74 ..     121     184 ..     118     201 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.8e-05
                      --EEEEEETTEEEEEETT-EEEESSEEEE--BSSBEEEETT--SS--..SS---TT-EEEGGGS-GGG-S CS
  Peptidase_M99_C   5 leelkiqvdnkdkevkigsvvevkesfeildldniranvigfvvskersdkpneagilikkkefakrfsl 74 
                      ++ + i vd+kd+     svv vk +   + ld+++    gf+ ++         g+li  + f+++f  
       CTQ26629.1 121 VDIVGIAVDDKDQSRGYHSVVIVKADSPYKTLDDLKGKAFGFADPDS------TSGYLIPNHAFKEKFGG 184
                      567889************************************99988......56888888888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2768.48
//
Query:       CTQ26630.1  [L=280]
Description: Phosphonates import ATP-binding protein PhnC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.8e-31  107.1   0.0    1.6e-30  106.4   0.0    1.3  1  ABC_tran     ABC transporter
    2.6e-07   30.8   0.0    0.00076   19.4   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
      4e-05   23.6   0.4    0.00023   21.1   0.1    2.0  2  RsgA_GTPase  RsgA GTPase
    0.00013   21.5   0.1     0.0075   15.7   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
      0.003   17.3   0.2     0.0065   16.2   0.2    1.5  1  AAA_29       P-loop containing region of AAA domain
     0.0044   16.5   0.0     0.0063   16.0   0.0    1.2  1  KdpD         Osmosensitive K+ channel His kinase sensor domai
  ------ inclusion threshold ------
      0.011   15.9   0.1      0.023   14.8   0.1    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
      0.011   15.4   0.0      0.024   14.4   0.0    1.5  1  AAA_30       AAA domain
      0.036   14.4   0.1       0.13   12.6   0.1    1.9  1  AAA_16       AAA ATPase domain
      0.036   13.5   0.0      0.047   13.1   0.0    1.1  1  Cellulase    Cellulase (glycosyl hydrolase family 5)
      0.051   13.3   0.1        5.1    6.7   0.0    2.1  2  AAA_15       AAA ATPase domain
        0.1   12.8   0.4          1    9.6   0.0    2.5  2  SbcCD_C      Putative exonuclease SbcCD, C subunit
       0.16   12.1   0.0       0.28   11.4   0.0    1.7  1  AAA_33       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   1.2e-33   1.6e-30       1     137 []      44     205 ..      44     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 1.2e-33
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE........EETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx......... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGei........lldgkdlke...qeleslrkeigvlpqepqlfpeltvren......... 79 
                 l+ +s++l++ge+v+++G++GaGKStLl +l g ++   Gei          d     +   + l+ +r++ g+++q+ +l p+l v +n         
  CTQ26630.1  44 LDGISFDLHAGEMVGVIGRSGAGKSTLLHVLNGTHSASGGEIlsypevgtPHDVS---QlkgRALNAWRSHCGMIFQDFCLVPRLDVLTNvllgrlsqt 139
                 789***************************************7777655433333...355599999******************************** PP

                 ............HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ............esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                             ++++++ ++l+++++   + +++    ++LSgGq qrva++ral+++p +ll+DEp a
  CTQ26630.1 140 stlkslfkifpaADRARAIALLEWMNMLPHALQRA----ENLSGGQMQRVAICRALMQNPGILLADEPVA 205
                 *********9999999999******9999777777....*****************************75 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0006      0.83       2      21 ..      57      76 ..      56      99 .. 0.84
   2 !   19.4   0.0   5.5e-07   0.00076     245     302 ..     185     239 ..     171     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0006
      AAA_21  2 nvliGpNgsGKSnLLdaldl 21
                 ++iG+ g+GKS+LL  l +
  CTQ26630.1 57 VGVIGRSGAGKSTLLHVLNG 76
                579************98854 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 5.5e-07
      AAA_21 245 lalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                  a+  al + +   ++ll DEp ++L+Pk + r++++l+e s+ g+ v++  HS +l+
  CTQ26630.1 185 VAICRALMQNP---GILLADEPVASLDPKNTQRIMDVLREISEQGISVMVNLHSVELV 239
                 35555555555...**************************999999999988887775 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   1.7e-07   0.00023      85     132 ..      39      87 ..      20      95 .. 0.82
   2 ?    0.1   0.0      0.47   6.4e+02      25      60 ..     207     240 ..     204     247 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.7e-07
                  TTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase  85 ktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevse 132
                   +++ l+ ++  l+  +++ ++G SG+GKStL+ +l+++++++ ge+ +
   CTQ26630.1  39 AQHKVLDGISFDLHAgEMVGVIGRSGAGKSTLLHVLNGTHSASGGEILS 87 
                  45677888888888879999******************99988888765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.47
                  STTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG-- CS
  RsgA_GTPase  25 lkepelslnlldrfLvlaeekgiepvivlnKiDlle 60 
                  l+    +++++  +L ++ e+gi++++ l  ++l+ 
   CTQ26630.1 207 LD--PKNTQRIMDVLREISEQGISVMVNLHSVELVR 240
                  54..45778888899999********9999888875 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.025        34      25      42 ..      55      72 ..      35      79 .. 0.83
   2 !   15.7   0.0   5.5e-06    0.0075     122     212 ..     162     250 ..     142     254 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.025
                SEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlld 42
                ++  ++G+ G+GKs ll 
  CTQ26630.1 55 EMVGVIGRSGAGKSTLLH 72
                46789*********9986 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 5.5e-06
                 HHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-.SCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxx RF
       SMC_N 122 evsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemleka.dklvgvt 212
                 e +++l++a    e+LSgG+ + va  +  A+  ++   + l De  a LD kn++++ ++l+e s++   ++v  ++ e+++    +++gv 
  CTQ26630.1 162 EWMNMLPHALQRAENLSGGQMQRVA--ICRAL--MQNPGILLADEPVASLDPKNTQRIMDVLREISEQgISVMVNLHSVELVRAYcTRVIGVA 250
                 66788888889999*****976555..44444..445578899*********************99884555555555555544356666665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   4.7e-06    0.0065      13      39 ..      45      71 ..      40      79 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.7e-06
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                dg +++++  +++ ++G+sG+GKSTll
  CTQ26630.1 45 DGISFDLHAGEMVGVIGRSGAGKSTLL 71
                55667787556999************8 PP

>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.6e-06    0.0063      44     147 ..     153     256 ..     137     265 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.6e-06
        KdpD  44 grketealleglevipr...keveykgkeleeldldailarkpevvlvDelahtnapgsrhekryqdv.eelLeagidVittvnvqhleslndvvekit 138
                 +r++  alle ++++p+   ++ + +g +++++ +  +l ++p ++l De   +   + ++++r  dv +e+ e+gi+V+  vn++ +e ++   +++ 
  CTQ26630.1 153 DRARAIALLEWMNMLPHalqRAENLSGGQMQRVAICRALMQNPGILLADEPVASL--DPKNTQRIMDVlREISEQGISVM--VNLHSVELVRAYCTRVI 247
                 67777888888888875111455667888999999999************87766..55778888887479********8..88899999999999999 PP

        KdpD 139 gvrvretvP 147
                 gv   + + 
  CTQ26630.1 248 GVASGQLIF 256
                 988877765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.6e-05     0.023       2      22 ..      57      77 ..      56      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                v+++Gr+ +GKStL+  l g+
  CTQ26630.1 57 VGVIGRSGAGKSTLLHVLNGT 77
                89*************999776 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.7e-05     0.024      19      50 ..      55      86 ..      37      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrvi 50
                 ++ + G+ G+GK+t+l +l+ ++ a+gg+++
  CTQ26630.1 55 EMVGVIGRSGAGKSTLLHVLNGTHSASGGEIL 86
                378899*********************98886 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   9.5e-05      0.13      24      63 ..      54     112 ..      39     228 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.5e-05
      AAA_16  24 pelvllsGesGvGKsslvrellralekd...................ggiflrgkcdql 63 
                 +e+v ++G sG GKs+l+  l    +++                   +g +l+++  ++
  CTQ26630.1  54 GEMVGVIGRSGAGKSTLLHVLNGTHSASggeilsypevgtphdvsqlKGRALNAWRSHC 112
                 48999*************88876655555555555555555555555444444444444 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.4e-05     0.047      39      85 ..     184     236 ..     162     265 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.4e-05
                 EEEEECTGGTTSSTTT........GCTHHHHHHHHHHHHHHHHTT-EEEEEEESS CS
   Cellulase  39 Rlpvswgelvenapdy........kvdenslerveevvkyakenglyvildiHse 85 
                 R++++ + l+ ++p++        + d+++ +r+ +v+  + e+g+ v++++Hs 
  CTQ26630.1 184 RVAIC-RALM-QNPGIlladepvaSLDPKNTQRIMDVLREISEQGISVMVNLHSV 236
                 66666.2222.23333333333349999*************************96 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.016        22      25      44 ..      56      75 ..      46      85 .. 0.85
   2 ?    6.7   0.0    0.0037       5.1     322     365 ..     193     235 ..     171     239 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.016
      AAA_15 25 ltvliGkNnsGKSsileald 44
                +  +iG+ ++GKS++l++l+
  CTQ26630.1 56 MVGVIGRSGAGKSTLLHVLN 75
                5668*************995 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0037
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                 +++ ill +EP a+L p++ + +++ l+e+++++   v++  HS
  CTQ26630.1 193 QNPGILLADEPVASLDPKNTQRIMDVLREISEQGI-SVMVNLHS 235
                 56789****************************98.78887777 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       6.2   8.5e+03      28      37 ..      75      84 ..      62      85 .. 0.72
   2 ?    9.6   0.0   0.00074         1      62      89 ..     193     220 ..     168     221 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.2
     SbcCD_C 28 rssgtlSGGe 37
                + + + SGGe
  CTQ26630.1 75 NGTHSASGGE 84
                5567889998 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00074
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                 +++++++ DE  ++lD++++++++++l+
  CTQ26630.1 193 QNPGILLADEPVASLDPKNTQRIMDVLR 220
                 35889999*****************998 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0002      0.28       2      32 ..      57      90 ..      56     232 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
      AAA_33  2 vllvGlpGsGKstlaerl...lkklgavllssdt 32
                v ++G +G+GKstl++ l   + + g+++ls ++
  CTQ26630.1 57 VGVIGRSGAGKSTLLHVLngtHSASGGEILSYPE 90
                6689***********9986667777798888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 2364.69
//
Query:       CTQ26631.1  [L=180]
Description: putative transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-12   44.3   0.2      2e-11   43.2   0.2    1.5  1  GerE          Bacterial regulatory proteins, luxR family
    5.2e-05   22.8   0.1    9.1e-05   22.1   0.1    1.4  1  Sigma70_r4_2  Sigma-70, region 4
    0.00015   21.4   0.1    0.00029   20.6   0.1    1.4  1  HTH_23        Homeodomain-like domain
    0.00021   21.3   0.1    0.00041   20.4   0.1    1.5  1  HTH_7         Helix-turn-helix domain of resolvase
  ------ inclusion threshold ------
      0.011   15.7   0.1      0.019   15.0   0.1    1.3  1  HTH_29        Winged helix-turn helix
      0.014   15.5   0.0      0.023   14.8   0.0    1.3  1  HTH_28        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.2   6.8e-15     2e-11       3      45 ..     129     171 ..     127     174 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 6.8e-15
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKL 45 
                  ++RE+++ r++a+G+  k IA++ n+S kTV +h++n+  KL
  CTQ26631.1 129 ITDREMKIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 171
                 699************************************9998 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1     3e-08   9.1e-05      12      54 .]     130     171 ..     126     171 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3e-08
                   -HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  12 perqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   + r+ +i+ +   +g+  k IA++ ++s++tV+++ + A +kL
    CTQ26631.1 130 TDREMKIIRM-TAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 171
                   6788999999.58**************************9997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   9.6e-08   0.00029       8      40 ..     134     166 ..     129     173 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 9.6e-08
      HTH_23   8 lrillllaeGlsvreIAreLgvsrrTvyrwlkr 40 
                 ++i+++ a+G+ ++ IAr+ ++s  Tvy  ++ 
  CTQ26631.1 134 MKIIRMTAQGMQPKSIARIENCSVKTVYTHRRN 166
                 68**************************87765 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.4e-07   0.00041      13      39 ..     135     161 ..     122     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.4e-07
                 GGGSSTTTT--STTTSSSS---SSSS- CS
       HTH_7  13 rvvkLleeGisiskIAkevnisRsTvY 39 
                  ++++ ++G++ + IA++ n+s+ TvY
  CTQ26631.1 135 KIIRMTAQGMQPKSIARIENCSVKTVY 161
                 689************************ PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   6.2e-06     0.019       3      36 ..     135     167 ..     134     170 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.2e-06
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyrwlkrf 36 
                 +++++ a+G+  ++ iA++ ++s +tvy++++  
  CTQ26631.1 135 KIIRMTAQGMQ-PKSIARIENCSVKTVYTHRRNA 167
                 899*******5.*****************99765 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   7.8e-06     0.023       4      38 ..     135     169 ..     134     170 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.8e-06
      HTH_28   4 eiikllaaGhsvreaArelgisrrtvyrWikryee 38 
                 +ii+  a+G+  + +Ar+ ++s  tvy  ++  e+
  CTQ26631.1 135 KIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEA 169
                 89**************************9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1560.87
//
Query:       CTQ26632.1  [L=195]
Description: E. coli common pilus (ECP) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-87  291.4  15.1    2.2e-87  291.1  15.1    1.0  1  MatB      Fimbrillin MatB
  ------ inclusion threshold ------
      0.078   12.7   0.5       0.14   11.9   0.3    1.4  1  DEAD      DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> MatB  Fimbrillin MatB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.1  15.1   2.4e-91   2.2e-87       1     167 []      26     193 ..      26     193 .. 1.00

  Alignments for each domain:
  == domain 1  score: 291.1 bits;  conditional E-value: 2.4e-91
        MatB   1 vaqavatwkatakkdttsklvvtpldslsfqyaeGikgfnsqkGlfdvaieGdssatdfkltsklisntltrldtsgstldvGvkynGaavsktadtvl 99 
                 +aqavatw+atakkdttsklvvtpl+sl+fqyaeGikgfnsqkGlfdvaieGd++at+fklts+li+ntlt+ldtsgstl+vGv+ynGaav+kt+dtv+
  CTQ26632.1  26 TAQAVATWSATAKKDTTSKLVVTPLGSLAFQYAEGIKGFNSQKGLFDVAIEGDTTATAFKLTSRLITNTLTQLDTSGSTLSVGVDYNGAAVEKTGDTVM 124
                 79************************************************************************************************* PP

        MatB 100 idtaaGilgGnlspladglyndserataqdeftfniisatanGtta..dfktlpdGiwsGdvsveftatw 167
                 idta+ i+gGnls la+g yn+s+r+taqd ftf+iis+t+nGtta  d++tlp+GiwsGdvsv+f+atw
  CTQ26632.1 125 IDTANNIMGGNLSALANG-YNASGRTTAQDGFTFSIISGTTNGTTAvtDYSTLPEGIWSGDVSVQFDATW 193
                 ******************.***************************9*********************** PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   1.6e-05      0.14      18      87 ..      10      80 ..       4     108 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.6e-05
                EEEESTTSSHHHHHHHHHH..HHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSH CS
                xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 18 lvaaeTGsGKTlaflipvl..qivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaa 87
                lv a TG+G   a+ + +   ++ + t +k+++  l+v+P+ +La q ++ +k f ++ +l  ++ i+g+++
  CTQ26632.1 10 LVTAFTGMGVAQAADVTAQavATWSATAKKDTTSKLVVTPLGSLAFQYAEGIKGFNSQKGLFDVA-IEGDTT 80
                67788888888886554430044444478888899********************9976644433.444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1547.19
//
Query:       CTQ26633.1  [L=222]
Description: hypothetical protein CH1034_130084 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-32  110.9   0.1    5.7e-32  109.5   0.0    1.7  2  EcpB_C    EcpB C-terminal domain
     0.0029   17.5   0.0     0.0042   17.0   0.0    1.3  1  PapD_N    Pili and flagellar-assembly chaperone, PapD N-termi


Domain annotation for each model (and alignments):
>> EcpB_C  EcpB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.35   3.1e+03      36      42 ..     104     110 ..      98     131 .. 0.72
   2 !  109.5   0.0   6.4e-36   5.7e-32       1      72 []     150     221 ..     150     221 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.35
      EcpB_C  36 kerYyvm 42 
                 kerYy +
  CTQ26633.1 104 KERYYRI 110
                 8999965 PP

  == domain 2  score: 109.5 bits;  conditional E-value: 6.4e-36
      EcpB_C   1 fdykykngkvsNtGNvsfrvvAyGpCkdkkegkgCkerYyvmPgkkvklkkvdvsdkkskvglwhgeefiev 72 
                 ++++y+ng+++NtGN+++r++AyGpC+++++gk+Cke+Yy+mPgk++++++vd++dkk++v+lw+ge+f++v
  CTQ26633.1 150 YRFQYANGSLTNTGNATLRILAYGPCLKAADGKECKENYYLMPGKSRRFTRVDTADKKGRVALWQGEQFVPV 221
                 78********************************************************************97 PP

>> PapD_N  Pili and flagellar-assembly chaperone, PapD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.7e-07    0.0042       8      94 ..      27     115 ..      20     148 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.7e-07
                 EEEEETTSSEEEEEEEE-SSS-EEEEEEEEC.....TTSSSTCCSSCS.SEEEESSEEEE-TTEEEEEEEEE.SS---SSS-EEEEEEEEEE CS
      PapD_N   8 rviynadekeasvtvkNtgkepylvqswvdd.....gdeeaedekakaspfvvtPPlfrlepgeeqvlRivtagkklpkdrEslfwlnvkei 94 
                    +n++++  s t+kN++++  l+++++++     +  +  + +++  ++++tP    l ++++ v+R++ +g+  ++d+E  +++   + 
  CTQ26633.1  27 SSFMNSGSSTLSKTIKNSTDSGRLINIHLERlssplDGGQVIPMDKPD-EVLLTPASLLLPAQASDVIRFFYKGP--ADDKERYYRIVWFDQ 115
                 556899999999****************99964443333456667677.9********************77355..5*******9975444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1681.43
//
Query:       CTQ26634.1  [L=841]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-29  102.0   0.0    3.7e-29  100.6   0.0    1.8  1  CooC_C           CS1-pili formation C-terminal
    4.1e-27   93.5   0.3    2.5e-26   90.9   0.1    2.4  2  TcfC             E-set like domain
     0.0011   19.0   0.0     0.0026   17.7   0.0    1.7  1  CarbopepD_reg_2  CarboxypepD_reg-like domain
     0.0037   17.5   2.7     0.0072   16.6   0.0    3.0  4  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
  ------ inclusion threshold ------
      0.068   13.4   0.0       0.21   11.9   0.0    1.8  1  MetallophosN     N terminal of Calcineurin-like phosphoestera
      0.091   12.7   0.0         28    4.8   0.0    3.2  3  DUF4982          Domain of unknown function (DUF4982)


Domain annotation for each model (and alignments):
>> CooC_C  CS1-pili formation C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   1.2e-32   3.7e-29       1      93 []     732     824 ..     732     824 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 1.2e-32
      CooC_C   1 llpGnvavlevsvkktvtviGrlvdedgqplanakilnhagvavteedGvFtlevdakapsltvengdt.lyeveldlertrdevvlvGevtCk 93 
                 l+pGnvav+e +vk++vtv Gr+++edg++lana+i+nh+g+++t+e+G+F ++vd+k+p++++++g++ ++ev+l+l+++r ++v+vG+v+C+
  CTQ26634.1 732 LYPGNVAVIEPEVKQMVTVSGRIRAEDGTLLANARINNHIGRTRTDENGEFVMDVDKKYPTIDFSYGGNkTCEVALELSQAR-GAVWVGDVVCS 824
                 89*****************************************************************999***********7.**********6 PP

>> TcfC  E-set like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.1   8.3e-30   2.5e-26       1      68 []     283     350 ..     283     350 .. 0.99
   2 ?   -1.4   0.0      0.55   1.6e+03      42      51 ..     702     711 ..     701     715 .. 0.90

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 8.3e-30
        TcfC   1 satplvvflpragrveiyRdgqLlstqnvnaGnqeidtssLPsGiYeveirvyengqvvrteqqkftk 68 
                 satp+++flp+ag+v+++Rdg+Lls+qn+++Gn+e+dt+ LP+GiY+ve++v++ng+vv++++q+++k
  CTQ26634.1 283 SATPVIAFLPAAGEVHLTRDGRLLSVQNFAMGNHEVDTRGLPYGIYDVEVEVIVNGRVVSKRTQRVNK 350
                 79****************************************************************98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.55
        TcfC  42 PsGiYeveir 51 
                 P+G Yeve++
  CTQ26634.1 702 PYGRYEVELQ 711
                 9******985 PP

>> CarbopepD_reg_2  CarboxypepD_reg-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   8.9e-07    0.0026       2      66 ..     751     811 ..     750     816 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 8.9e-07
  CarbopepD_reg_2   2 sGtVvdketkeplpgatVyvkgtkkgtvTdenGnFelknlpagkytLvvsyvGyktqekkvtvsk 66 
                      sG++  +++      a+  +++    t TdenG+F ++ ++++  t+ +sy G kt e+ +++s+
       CTQ26634.1 751 SGRIRAEDG---TLLANARINNHIGRTRTDENGEFVMD-VDKKYPTIDFSYGGNKTCEVALELSQ 811
                      677776543...35677888999999***********6.888888************99999876 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.8   8.3e+03      43      55 ..     321     333 ..     320     343 .. 0.82
   2 ?   -3.3   0.0       3.9   1.2e+04      53      81 ..     406     434 ..     401     435 .. 0.56
   3 ?   -2.7   0.1       2.5   7.6e+03      29      62 ..     628     641 ..     611     649 .. 0.57
   4 !   16.6   0.0   2.4e-06    0.0072       1      70 [.     749     810 ..     749     818 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.8
  CarboxypepD_reg  43 rglppgtysvtvs 55 
                      rglp g y+v+v+
       CTQ26634.1 321 RGLPYGIYDVEVE 333
                      6899999999986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.9
  CarboxypepD_reg  53 tvsapGyatatreevtltagqtttlditL 81 
                       ++  Gy+ +++ e +lt    + ++++L
       CTQ26634.1 406 AATGYGYDNQAVGETRLTLPLGESINVNL 434
                      56667888888754444444444455544 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.5
  CarboxypepD_reg  29 vastttdadGafrlrglppgtysvtvsapGyata 62 
                      + ++ ++adG+ +                    +
       CTQ26634.1 628 TLNVNSAADGYVN--------------------T 641
                      3345555555544....................3 PP

  == domain 4  score: 16.6 bits;  conditional E-value: 2.4e-06
  CarboxypepD_reg   1 tisGrVtdasgapiagatVtvtnadtgtvastttdadGafrlrglppgtysvtvsapGyatatreevtlt 70 
                      t+sGr++ ++g+ +a+a++           +t+td++G+f ++ +     ++ +s+ G +t ++  ++l+
       CTQ26634.1 749 TVSGRIRAEDGTLLANARINNH------IGRTRTDENGEFVMD-VDKKYPTIDFSYGGNKTCEVA-LELS 810
                      79*****************999......9************97.999999999999999988863.5555 PP

>> MetallophosN  N terminal of Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.9e-05      0.21       1      41 [.     752     793 ..     752     800 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.9e-05
  MetallophosN   1 GkVt.skgkgvagVvVsDGvnvtkTdakGrYeLksdkkakfV 41 
                   G++  ++g+ +a+  +++ +  t+Td++G++ ++ dkk   +
    CTQ26634.1 752 GRIRaEDGTLLANARINNHIGRTRTDENGEFVMDVDKKYPTI 793
                   7888889999************************88887665 PP

>> DUF4982  Domain of unknown function (DUF4982)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.7     5e+03      12      29 ..     294     311 ..     285     321 .. 0.79
   2 ?    4.8   0.0    0.0092        28      14      30 ..     331     356 ..     328     367 .. 0.73
   3 ?    4.0   0.0     0.017        49      33      55 ..     615     637 ..     589     641 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.7
                 SSEEEEEETTEEEEEE.. CS
     DUF4982  12 adeVeLflNGkslGrkkk 29 
                 a eV L  +G+ l  +++
  CTQ26634.1 294 AGEVHLTRDGRLLSVQNF 311
                 6799******99999887 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0092
                 EEEEEETTEEEEEE...........E CS
     DUF4982  14 eVeLflNGkslGrkkk.........k 30 
                 eVe ++NG+ + +++          +
  CTQ26634.1 331 EVEVIVNGRVVSKRTQrvnklfsrgR 356
                 8************9986655555443 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.017
                 SS-EEEEEEB-SSEEEEEEEETT CS
     DUF4982  33 dyrltWdvpyepGeLkAvayknG 55 
                   ++++d  y+ G+L + + ++G
  CTQ26634.1 615 GAYAQFDARYASGTLNVNSAADG 637
                 56899************998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (841 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 6235.21
//
Query:       CTQ26635.1  [L=547]
Description: putative surface or exported protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 4266.02
//
Query:       CTQ26636.1  [L=236]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-05   25.3   0.0    1.7e-05   24.7   0.0    1.3  1  PapD_N    Pili and flagellar-assembly chaperone, PapD N-termi


Domain annotation for each model (and alignments):
>> PapD_N  Pili and flagellar-assembly chaperone, PapD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   9.3e-10   1.7e-05       2     124 ..      28     155 ..      27     156 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.3e-10
                 EEESSSEEEEETTSSEEEEEEEE-SSS-EEEEEEEEC....TTSSSTCCSSCS.SEEEESSEEEE-TTEEEEEEEEE.SS---SSS-EEEEEEEEEE-- CS
      PapD_N   2 vviggtrviynadekeasvtvkNtgkepylvqswvdd....gdeeaedekakaspfvvtPPlfrlepgeeqvlRivtagkklpkdrEslfwlnvkeiPp 96 
                 +++g+  + ++a++  as +v N++k++ l  + v++    g +e +++  +  +++  P    l++ge++  +++ +g+   ++rE  +++ ++eiP 
  CTQ26636.1  28 ISVGNLTFSLPAEADFASKRVVNNNKSARLYRIAVSAidrpGGSEVRSRPVDG-ELLFAPRQLVLQAGESEYFKFYYHGPR--DNRERYYRVSFREIPT 123
                 77888889999999999999999999888877776664113333333333344.7********************774665..99************** PP

                 --..-...TCEEEEEEEEEEEEEEEEEEETTS CS
      PapD_N  97 kk..kk..kekknklqlalrsriklfyrPagl 124
                 ++  ++   + + +++ ++ +   l++rP+++
  CTQ26636.1 124 RNltRRspTGGEVSMEPVVVMDTILVVRPREV 155
                 99862234566677777888888889998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1836.09
//
Query:       CTQ26637.1  [L=229]
Description: His/Glu/Gln/Arg/opine family amino ABC transporter, permease, 3-TM region [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-16   59.0  13.2    4.9e-16   59.0  13.2    1.4  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1      0.37   6.6e+03     157     167 ..      26      36 ..      15      41 .. 0.45
   2 !   59.0  13.2   2.7e-20   4.9e-16       2     183 ..      43     226 ..      42     228 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.37
  BPD_transp_1 157 gvlalviavll 167
                   g +al++++++
    CTQ26637.1  26 GGVALTLLMAI 36 
                   33333333333 PP

  == domain 2  score: 59.0 bits;  conditional E-value: 2.7e-20
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf.vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasr 94 
                   +++Gi +a    ++++ +++ll    ++++++P + +++ l +++ ++ ++   ++  v ++l++++a+ v++ + a+l+slpk+++eaa++ G  +
    CTQ26637.1  43 LPGGIALAglaWRYGGLVRRLLFLWAEIIRGIPLIFVIFWLWYLLpMLTGGDLPGAVTVTLALAWFTAASVMHSVLAGLQSLPKGQYEAALTQGFAP 139
                   788999999999************************8888887773333444456666899999********************************* PP

  BPD_transp_1  95 wqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                    q++r v+lP+al+ + ++l+  f+gll++++l+ ++   p l+t+  ++++  ++   + + v+++++++ll++ ++ +  r + +r 
    CTQ26637.1 140 GQTLRLVLLPQALRNVQPSLVGIFIGLLKDTSLAFIVN-VPELTTVAGQVNNRVQIYPLA-IFVFTGAVYYLLCCGLSLLASRRFTRRA 226
                   *******************************9886666.666888877777776655555.7999999999999988888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1842.37
//
Query:       CTQ26638.1  [L=250]
Description: Glutamate/aspartate transport system inner membrane component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-10   41.4   7.1    1.3e-10   41.4   7.1    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   2.1     0.028     5e+02     138     167 ..      13      44 ..       5      50 .. 0.41
   2 !   41.4   7.1     7e-15   1.3e-10       9     182 ..      41     239 ..      33     242 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.028
  BPD_transp_1 138 gtllleailgydyseis..nggvlalviavll 167
                   g++l  +i+g+ ++ +   +g++la+++avll
    CTQ26638.1  13 GQPLQWIISGFLTTVWVsiAGILLATLLAVLL 44 
                   33333344444444333222222222222222 PP

  == domain 2  score: 41.4 bits;  conditional E-value: 7e-15
  BPD_transp_1   9 a.......lnrnkkldkllrpliivllslPsfvlaillvlvf......................vilsilghlilp.viillllsaapyvrlirraa 75 
                   a       l  ++ ++ l+   + +++ +P +v ++++++++                        + ++ +  +   +  l +++ ++ +  ++++
    CTQ26638.1  41 AvlllalrLGGGRAGRGLVAAWVSLFRNTPLLVQLLFWYFAAwnllplavkevvndehawsilpG-NVWWLTPEFLcSMWGLGVFTSAFLVEEIASG 136
                   444444666689999**********************99888****************8877642.3333333333367777788888888899*** PP

  BPD_transp_1  76 lrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlva 172
                   lr+++ +++eaa+  G ++wq +r ++lP+ l  +   ++ +  +l++ ++l++ +g    +  l+ ++ ++  y++ +  +++++++++l+l +++
    CTQ26638.1 137 LRAVSPGQREAALSQGFTPWQELRFILLPQGLANAWQPIVGQYLNLMKLSSLASGIG----FAELTYQVRQIESYNAHALEAFAVGTALYLALGVAM 229
                   *********************************************************....***********************************9 PP

  BPD_transp_1 173 dilqrlldpr 182
                    +  + l p 
    CTQ26638.1 230 GVALTRLGPG 239
                   9999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2051.46
//
Query:       CTQ26639.1  [L=272]
Description: glutamate and aspartate transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-38  130.2   0.1    9.9e-38  129.8   0.1    1.2  1  ABC_tran        ABC transporter
    5.2e-12   46.2   1.8      1e-06   28.8   0.0    2.1  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
      1e-07   31.6   0.7    2.2e-06   27.3   0.7    2.1  1  SMC_N           RecF/RecN/SMC N terminal domain
    6.3e-06   25.2   0.0     0.0037   16.0   0.0    2.1  2  AAA_13          AAA domain
    1.1e-05   25.9   2.0    2.8e-05   24.6   1.8    1.8  1  AAA_16          AAA ATPase domain
    0.00023   21.1   0.0    0.00045   20.2   0.0    1.4  1  RsgA_GTPase     RsgA GTPase
    0.00023   20.8   0.0    0.00046   19.9   0.0    1.5  1  AAA_29          P-loop containing region of AAA domain
    0.00056   20.1   1.2      0.012   15.8   0.1    3.0  2  SbcCD_C         Putative exonuclease SbcCD, C subunit
     0.0011   19.3   0.4      0.013   15.7   0.4    2.3  1  AAA_22          AAA domain
     0.0011   18.7   0.7     0.0047   16.7   0.7    2.0  1  AAA_30          AAA domain
     0.0025   16.7   0.1      0.023   13.5   0.0    2.0  2  Adeno_IVa2      Adenovirus IVa2 protein
     0.0028   18.2   0.0     0.0065   17.0   0.0    1.7  1  AAA_18          AAA domain
     0.0038   17.8   0.0     0.0058   17.2   0.0    1.5  1  AAA_23          AAA domain
     0.0088   16.2   0.1      0.018   15.2   0.1    1.7  1  AAA_33          AAA domain
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.021   14.7   0.0    1.4  1  ATPase_2        ATPase domain predominantly from Archaea
      0.016   15.3   0.1      0.039   14.0   0.1    1.6  1  DUF87           Helicase HerA, central domain
      0.018   15.5   0.1       0.26   11.7   0.1    2.5  2  AAA             ATPase family associated with various cellula
       0.02   14.1   0.0       0.06   12.5   0.0    1.7  2  NB-ARC          NB-ARC domain
      0.023   14.6   0.1       0.22   11.4   0.0    2.2  2  NACHT           NACHT domain
      0.023   13.5   0.4        1.8    7.2   0.1    2.6  2  ABC_ATPase      Predicted ATPase of the ABC class
      0.031   14.2   0.0       0.63    9.9   0.0    2.2  2  NTPase_1        NTPase
       0.05   13.5   0.0      0.087   12.7   0.0    1.3  1  Rad17           Rad17 P-loop domain
      0.064   13.0   0.1       0.16   11.7   0.1    1.7  1  Cytidylate_kin  Cytidylate kinase
      0.087   12.9   0.2       0.24   11.5   0.1    1.8  2  MMR_HSR1        50S ribosome-binding GTPase
      0.097   12.7   0.1        1.4    8.9   0.1    2.3  2  AAA_5           AAA domain (dynein-related subfamily)
      0.099   12.9   1.2       0.46   10.7   0.1    2.4  3  AAA_28          AAA domain
       0.11   11.4   0.0       0.18   10.7   0.0    1.4  1  AAA_10          AAA-like domain
       0.13   12.0   0.0       0.45   10.2   0.0    1.8  2  ATP_bind_1      Conserved hypothetical ATP binding protein
       0.15   11.3   0.2        1.9    7.6   0.0    2.0  2  KAP_NTPase      KAP family P-loop domain
       0.19   11.4   0.1        3.8    7.1   0.0    2.0  2  AAA_15          AAA ATPase domain
       0.29   10.8   0.4        0.5   10.1   0.0    1.5  1  AAA_24          AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.8   0.1   1.7e-40   9.9e-38       1     137 []      39     188 ..      39     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: 129.8 bits;  conditional E-value: 1.7e-40
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren...........esdeei 85 
                 l+ ++l++++ge+vai+G++G+GKStL++l+ +l++   Geil+dgk++++     l++lr+++g+++q+ +l  +lt++en           e+++  
  CTQ26639.1  39 LNAINLQVEPGEVVAILGPSGSGKSTLIRLINQLESLSGGEILIDGKPTSRlsgSALRQLRSRVGFVFQQFNLYAHLTAQENitlalervhgwEKSAAQ 137
                 6899***********************************************9*9**************************************9555555 PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++al+ l++++l+++  ++ p++LSgGq+qrva+aral++ p+++l+DEpt+
  CTQ26639.1 138 ARALALLRQVGLEEKA-QQMPAQLSGGQQQRVAIARALASSPQIILFDEPTS 188
                 5555555555533333.4567*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.4   7.2e-06    0.0041       2      36 ..      52      80 ..      51     111 .. 0.66
   2 !   28.8   0.0   1.8e-09     1e-06     235     297 ..     158     217 ..     113     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.2e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltdel 36
                 ++ Gp gsGKS+L++++  l +       ++ e 
  CTQ26639.1 52 VAILGPSGSGKSTLIRLINQLES------LSGGEI 80
                689***************88843......233333 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 1.8e-09
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 ++lS G+++  a++ al++ +    ++l+DEp + L+P+++ ++l+++k l+  g+  +++TH
  CTQ26639.1 158 AQLSGGQQQRVAIARALASSP---QIILFDEPTSALDPEMIGEVLQVMKTLAHSGITMLVVTH 217
                 678999999988888888888...9***********************999999********* PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.7   3.9e-09   2.2e-06      25     207 ..      50     228 ..      31     234 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 3.9e-09
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSC.EEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekee.vsisrrvkrkgeseykingkevtkke 122
                 ++ ai+Gp GSGKs l+  i  + + +  + l   k ++ ++   +  ++ + +v  +f++ +  ++ +++e +++  + +++ e       k++ ++ 
  CTQ26639.1  50 EVVAILGPSGSGKSTLIRLINQLESLSGGEILIDGKPTSRLS--GSALRQLRSRVGFVFQQFNLYAHLTAQEnITLALERVHGWE-------KSAAQAR 139
                 4789**************997666655555555555444444..36777788899999988888755444441555555444444.......5555555 PP

                 HHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-.SC CS
                 xxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xx RF
       SMC_N 123 vsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemleka.dk 207
                    ll+++g++++      +LSgG+++ va+a  +A        + l+De  +aLD + + +v +++k+  ++   ++v++++ ++ ++  d+
  CTQ26639.1 140 ALALLRQVGLEEKaqqmpaQLSGGQQQRVAIARALASS----PQIILFDEPTSALDPEMIGEVLQVMKTLAHSgITMLVVTHEMQFAREIaDR 228
                 5566666666665556666************9988753....34899*********************88876699******99988765355 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0027       1.5      21      42 ..      54      75 ..      41     122 .. 0.83
   2 !   16.0   0.0   6.3e-06    0.0037     526     580 ..     177     228 ..     167     266 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0027
      AAA_13 21 iYGwNGaGKTtLSrllrslelg 42
                i G  G+GK+tL rl+++le+ 
  CTQ26639.1 54 ILGPSGSGKSTLIRLINQLESL 75
                78999**************864 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 6.3e-06
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580
                   +i+ +D P S LD +++  v   +k+ +   ++   +++ TH ++f +e+ ++
  CTQ26639.1 177 SPQIILFDEPTSALDPEMIGEVLQVMKTLA---HSGITMLVVTHEMQFAREIADR 228
                 578**************************9...666668899*********9886 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   1.8   4.8e-08   2.8e-05      11     127 ..      37     174 ..      34     242 .. 0.53

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 4.8e-08
      AAA_16  11 qLlsale.rvrsgrpelvllsGesGvGKsslvrellralekd........................ggiflrgkcdqlesaipysalaqalareellrq 84 
                 q+l+a++ +v  g  e+v + G+sG+GKs+l+r + +  + +                        ++ f+ +++  +                   + 
  CTQ26639.1  37 QVLNAINlQVEPG--EVVAILGPSGSGKSTLIRLINQLESLSggeilidgkptsrlsgsalrqlrsRVGFVFQQFNLY-------------------AH 114
                 5566666344444..89******************9733334433333344444444444444433333333333333...................22 PP

      AAA_16  85 lldeaesaeleawrekleeala.........................avpelagaea..srllellkrll 127
                 l ++          e ++ al+                          +++++++++  ++ + +++r+l
  CTQ26639.1 115 LTAQ----------ENITLALErvhgweksaaqaralallrqvgleeKAQQMPAQLSggQQQRVAIARAL 174
                 2222..........22222222222222222222222222222233222222222222233333333444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   7.7e-07   0.00045      86     130 ..      35      80 ..      14      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 7.7e-07
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  +++ l++++ +++  ++++++G+SG GKStLi  +++ ++l+ ge+
   CTQ26639.1  35 DHQVLNAINLQVEPgEVVAILGPSGSGKSTLIRLINQLESLSGGEI 80 
                  5677788888888779****************99999888877777 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     8e-07   0.00046      17      39 ..      44      66 ..      36      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 8e-07
      AAA_29 17 ieidlkgatlltGpsGsGKSTll 39
                +++++ +++ + GpsGsGKSTl+
  CTQ26639.1 44 LQVEPGEVVAILGPSGSGKSTLI 66
                56777789**************8 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       2.6   1.5e+03      26      37 ..      68      79 ..      58      97 .. 0.85
   2 !   15.8   0.1   2.1e-05     0.012      22      89 ..     149     203 ..     136     204 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.6
     SbcCD_C 26 lsrssgtlSGGe 37
                l ++ ++lSGGe
  CTQ26639.1 68 LINQLESLSGGE 79
                67788999***9 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.1e-05
     SbcCD_C  22 kekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                  e++ +++ ++lSGG++q    +a+a     ++ s      +++++++DE  s lD+e+i ++l++++
  CTQ26639.1 149 LEEKAQQMPAQLSGGQQQR---VAIA----RALAS------SPQIILFDEPTSALDPEMIGEVLQVMK 203
                 5566778888899999943...3344....33334......589********************9987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.4   2.3e-05     0.013       7     103 ..      51     190 ..      46     225 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.3e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee.........................................erpevv...fvtlpsstsskdllrell 61 
                 ++++ G+sG+GK+tl+r + +     +                                             e   ++   +v   +++  +  + +ll
  CTQ26639.1  51 VVAILGPSGSGKSTLIRLINQLES-LS---GgeilidgkptsrlsgsalrqlrsrvgfvfqqfnlyahltaqE-NITLaleRVHGWEKSAAQARALALL 144
                 7899************98776642.21...1234566677777777777776666666666666666666532.3333355555555556666666666 PP

      AAA_22  62 ralglelkaerlsseell.ealeqalrarav...ielliiDEaqh.l 103
                 r++gle ka  +   +l   + ++ + ara    +++++ DE    l
  CTQ26639.1 145 RQVGLEEKA-QQMPAQLSgGQQQRVAIARALassPQIILFDEPTSaL 190
                 666666666.3333333322222222222224455566666665555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.7   8.1e-06    0.0047      13      51 ..      44      82 ..      32     223 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.1e-06
      AAA_30 13 lltsgdrvavltGpAGtGKttalkalreaweaaggrvig 51
                l  ++  v+++ Gp G+GK+t+++ ++++   +gg++++
  CTQ26639.1 44 LQVEPGEVVAILGPSGSGKSTLIRLINQLESLSGGEILI 82
                444556799*******************99999866653 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.9e-05     0.023      68     106 ..      30      68 ..      10      80 .. 0.77
   2 ?    0.7   0.0       0.3   1.8e+02     233     255 ..     207     229 ..     198     233 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.9e-05
  Adeno_IVa2  68 dakllrddGelsslnyglqPv.iGviyGPtGsGksqllrn 106
                  +++  +   l ++n++ +P  +  i GP GsGks l+r 
  CTQ26639.1  30 AKRYGDH-QVLNAINLQVEPGeVVAILGPSGSGKSTLIRL 68 
                 4555555.67999*******5256699***********95 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.3
  Adeno_IVa2 233 ctgfsvlvvlhnlnPrsdiagni 255
                   g ++lvv h+++  ++ia+ +
  CTQ26639.1 207 HSGITMLVVTHEMQFAREIADRV 229
                 46899*********999999876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.1e-05    0.0065       1      44 [.      52      97 ..      52     146 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.1e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf..gvnlrdvakenglllevdpe 44
                +++ G++G+GK+tl + +++++ +  g++l+d  + ++l+ +   +
  CTQ26639.1 52 VAILGPSGSGKSTLIRLINQLESLsgGEILIDGKPTSRLSGSALRQ 97
                689***************9987558877777766666666655555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     1e-05    0.0058      20      40 ..      50      70 ..      31     185 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1e-05
      AAA_23 20 gltlItGpNGaGKTTildAik 40
                 +++I Gp G+GK+T+++ i 
  CTQ26639.1 50 EVVAILGPSGSGKSTLIRLIN 70
                5899*************9986 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   3.1e-05     0.018       1      82 [.      51     151 ..      51     229 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.1e-05
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.............avllssdtlrr.rlfg.tdqqsktdytrvldr.....lyqilnelarkalsagrnvildatn 79 
                 +v + G++GsGKstl++ + ++l              + +ls  +lr+ r ++    q+ + y++++ +     + +++++  ++a++a++ ++l++  
  CTQ26639.1  51 VVAILGPSGSGKSTLIRLI-NQLEslsggeilidgkpTSRLSGSALRQlRSRVgFVFQQFNLYAHLTAQenitlALERVHGWEKSAAQARALALLRQVG 148
                 78899**********9954.3333344743333333344444443333322223222222222222222122224555555555555555555555555 PP

      AAA_33  80 lsr 82 
                 l++
  CTQ26639.1 149 LEE 151
                 554 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.6e-05     0.021      15      46 ..      44      74 ..      37      91 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.6e-05
    ATPase_2 15 lerepneiyfiYGpegsGKtaLlkeiienled 46
                l+ ep e++ i Gp gsGK++L++  i++le+
  CTQ26639.1 44 LQVEPGEVVAILGPSGSGKSTLIRL-INQLES 74
                567899*****************85.555544 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   6.8e-05     0.039      26      56 ..      52      81 ..      49      83 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.8e-05
       DUF87 26 lAilgsTGsGKSntvavLleellekkgatil 56
                +Ailg +GsGKS++++++ +      g++il
  CTQ26639.1 52 VAILGPSGSGKSTLIRLINQLES-LSGGEIL 81
                7**************98854333.4455555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00046      0.26       3      74 ..      54     193 ..      52     230 .. 0.65
   2 ?   -1.4   0.0       5.1   2.9e+03      51      68 ..     220     236 ..     206     268 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00046
                 EESSTTSSHHHHHHHHHHH..H........THEEEEEETTTCSSS...................................................... CS
         AAA   3 lyGppGtGKTllakavake..l........gvefleisgsellsk...................................................... 37 
                 + Gp G GK++l++ + +   l        g +  ++sgs l++                                                       
  CTQ26639.1  54 ILGPSGSGKSTLIRLINQLesLsggeilidGKPTSRLSGSALRQLrsrvgfvfqqfnlyahltaqenitlalervhgweksaaqaralallrqvgleek 152
                 78************9988744244333444466778888877733677888888888888888888888888888888888888888888887877776 PP

                 .....STTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHH CS
         AAA  38 .....yvgesekkirelfkeakeka.kpsilfiDEidalaksr 74 
                       +  + ++ r  +  a++ a +p i+++DE  +    +
  CTQ26639.1 153 aqqmpAQLSGGQQQRVAI--ARALAsSPQIILFDEPTSALDPE 193
                 666443333333333333..33333558888888866665554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 5.1
                 HHHHHTSTSEEEEEETGG CS
         AAA  51 keakekakpsilfiDEid 68 
                 + a+e a   ++fiD  d
  CTQ26639.1 220 QFAREIA-DRVVFIDGGD 236
                 4566666.6788888544 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0    0.0001      0.06      15      43 ..      45      72 ..      34      79 .. 0.79
   2 ?   -1.6   0.0       2.1   1.2e+03      91     116 ..     161     190 ..     138     232 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0001
                TTTSCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 15 kdelqslvvalvGmgGvGKttlakqilnk 43
                + e++  vva+ G  G+GK+tl++ i++ 
  CTQ26639.1 45 QVEPG-EVVAILGPSGSGKSTLIRLINQL 72
                55677.79***************999865 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.1
                 S....HHHHHHHHCCCTTEEEEEEEE-SHH CS
      NB-ARC  91 s....lkrklvrlLltkrfllvlDDVweee 116
                 s        + r+L +   ++++D      
  CTQ26639.1 161 SggqqQRVAIARALASSPQIILFDEPTSAL 190
                 235445667788888888888887644443 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00038      0.22       2      20 ..      51      69 ..      50      75 .. 0.88
   2 ?    0.5   0.0      0.89   5.2e+02      73     112 ..     219     262 ..     184     270 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00038
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                +v++ G++GsGK+tL++ +
  CTQ26639.1 51 VVAILGPSGSGKSTLIRLI 69
                799************9876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.89
                 HHHHCCSCCCEEEEEE-STT-SS-TCH..............HHHH CS
       NACHT  73 wavllelperlLlilDglDelvtdlgq.....kekqpvrtlLsel 112
                 +++  e+++r+++i Dg D l+  +++      + +++r+ L++ 
  CTQ26639.1 219 MQFAREIADRVVFI-DGGDILEVAPPAeffahPQHARARRFLQKV 262
                 66677889999985.999999988888788665555666666655 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.042        24     244     265 ..      48      70 ..      42      72 .. 0.84
   2 ?    7.2   0.1    0.0032       1.8     322     377 ..     159     214 ..     150     257 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.042
                 SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 244 kG.vtlIvGggfhGKsTLLeAle 265
                  G v++I G+   GKsTL++ ++
  CTQ26639.1  48 PGeVVAILGPSGSGKSTLIRLIN 70 
                 55599*************99775 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0032
                 S--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HH CS
  ABC_ATPase 322 dASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplv 377
                 + SG   q ++i++al    +++L+DE tsA    +  e +q +    + +it lv
  CTQ26639.1 159 QLSGGQQQRVAIARALASSPQIILFDEPTSALDPEMIGEVLQVMKTLAHSGITMLV 214
                 569999*************************7643335555555555555666654 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0011      0.63       2      36 ..      52      88 ..      51     122 .. 0.71
   2 ?    2.2   0.0      0.26   1.5e+02     114     146 ..     198     231 ..     135     243 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
                EEEE--TTSSHHHHHHHH..HHHH...GGGEEEEEEE CS
    NTPase_1  2 vfiTGppGvGKtTlvkkv..lellkssgvkvgGfyte 36
                v+i Gp+G+GK+Tl++ +  le l+  ++ ++G  t+
  CTQ26639.1 52 VAILGPSGSGKSTLIRLInqLESLSGGEILIDGKPTS 88
                7899***********9882234565566666666555 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.26
                 HHHHHHHHHTTTSEEEEE--SS-.-SHHHHHHHT CS
    NTPase_1 114 fkeaveevLksekpvlavihrrk.dlalveeire 146
                 + + ++++ +s+  +l+v h+ +   ++ +++  
  CTQ26639.1 198 VLQVMKTLAHSGITMLVVTHEMQfAREIADRVVF 231
                 3444555555999999999999665566655554 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00015     0.087      33      67 ..      37      71 ..      31      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00015
       Rad17 33 ewlkadvLesrkkriLLisGPsGCgkstvvkvLsk 67
                + l+a  L+ ++ +++ i GPsG gkst ++ + +
  CTQ26639.1 37 QVLNAINLQVEPGEVVAILGPSGSGKSTLIRLINQ 71
                67899999999999****************98765 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00028      0.16       1      20 [.      52      71 ..      52      80 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00028
                    EEEE-STTSSHHHHHHHHHH CS
  Cytidylate_kin  1 iaiDGPagsGKssvaralae 20
                    +ai GP+gsGKs++ r++ +
      CTQ26639.1 52 VAILGPSGSGKSTLIRLINQ 71
                    7999**********999865 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00041      0.24       2      19 ..      52      69 ..      51      85 .. 0.88
   2 ?   -2.4   0.0       8.5   4.9e+03      30      36 ..     208     214 ..     165     237 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00041
                EEEEESTTSSHHHHHHHH CS
    MMR_HSR1  2 vaivGrpNvGKStLinal 19
                vai+G + +GKStLi+ +
  CTQ26639.1 52 VAILGPSGSGKSTLIRLI 69
                89*************866 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 8.5
                 TTSSSSE CS
    MMR_HSR1  30 pgtTrdi 36 
                  g T  +
  CTQ26639.1 208 SGITMLV 214
                 2222222 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1    0.0024       1.4       3      21 ..      53      71 ..      51      82 .. 0.87
   2 ?    1.5   0.0      0.46   2.7e+02      64      90 ..     172     203 ..     130     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0024
                EEE--SSSSHHHHHHHGGG CS
       AAA_5  3 lLvGppGtgKselaerlaa 21
                 ++Gp+G+gKs+l++ + +
  CTQ26639.1 53 AILGPSGSGKSTLIRLINQ 71
                589***********99876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.46
                 -....G-SEEEEESGGG--.HHHHHHHHHHHH CS
       AAA_5  64 r....egeilvlDEverae.sevlnsLlslle 90 
                 r    +++i+++DE + a  +e+++++l+++ 
  CTQ26639.1 172 RalasSPQIILFDEPTSALdPEMIGEVLQVMK 203
                 13335999999999999988999999988765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00079      0.46       2      21 ..      52      71 ..      51      81 .. 0.86
   2 ?   -0.1   0.1       1.7   9.6e+02      60      80 ..     163     185 ..     113     193 .. 0.60
   3 ?   -2.4   0.0       8.4   4.9e+03      31      80 ..     222     234 ..     201     259 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00079
      AAA_28  2 ivitGgestGKTtlleaLaa 21
                ++i+G++++GK+tl++ +++
  CTQ26639.1 52 VAILGPSGSGKSTLIRLINQ 71
                89*************87764 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.7
      AAA_28  60 leeqleeeaaa..aankvlfcDr 80 
                  ++q+ + a+a  ++++++++D 
  CTQ26639.1 163 GQQQRVAIARAlaSSPQIILFDE 185
                 22333233333337889999984 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 8.4
      AAA_28  31 areileeklakgedalpwvedllafaervleeqleeeaaaaankvlfcDr 80 
                 arei                                     a++v+f+D 
  CTQ26639.1 222 AREI-------------------------------------ADRVVFIDG 234
                 3333.....................................334444443 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00032      0.18      24      60 ..      52      87 ..      40     144 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00032
      AAA_10 24 sliiGdlGnGKSvlakllvlyisllggkaliiDpkke 60
                ++i+G+ G GKS l++l+    sl gg +l iD k  
  CTQ26639.1 52 VAILGPSGSGKSTLIRLINQLESLSGGEIL-IDGKPT 87
                59****************999999999987.576654 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00078      0.45       1      24 [.      54      77 ..      54      82 .. 0.86
   2 ?   -1.3   0.0       2.6   1.5e+03     107     137 ..     194     224 ..     166     234 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00078
  ATP_bind_1  1 vvGpaGsGKttfvgalseilelrg 24
                ++Gp GsGK+t+++ ++++ +l+g
  CTQ26639.1 54 ILGPSGSGKSTLIRLINQLESLSG 77
                68************9999887765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.6
  ATP_bind_1 107 hseslakiveeLesefalvvvyLvDsqrltd 137
                 +  +  +++++L++++ ++ v+  + q++++
  CTQ26639.1 194 MIGEVLQVMKTLAHSGITMLVVTHEMQFARE 224
                 4445556777777777777777666666655 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0033       1.9      17      44 ..      46      73 ..      36     112 .. 0.84
   2 ?    1.1   0.0      0.32   1.9e+02     185     221 ..     190     225 ..     150     239 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0033
  KAP_NTPase 17 latpivvgLygkWGsGKssllnkledel 44
                ++++ vv++ g+ GsGKs+l+ ++ +  
  CTQ26639.1 46 VEPGEVVAILGPSGSGKSTLIRLINQLE 73
                488999***************9998765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.32
  KAP_NTPase 185 ceteevlqlleavkllfslkpvvfilavDphviakai 221
                 +++e + ++l+++k+l++ +++++++++ + + a+ i
  CTQ26639.1 190 LDPEMIGEVLQVMKTLAH-SGITMLVVTHEMQFAREI 225
                 57889999*********9.899999988777766655 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0066       3.8      21      48 ..      44      74 ..      33     127 .. 0.83
   2 ?    2.6   0.0      0.15        87     322     364 ..     176     217 ..     151     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0066
      AAA_15 21 lsee...ltvliGkNnsGKSsilealdlFln 48
                l+ e   +  + G+ +sGKS+++++++ + +
  CTQ26639.1 44 LQVEpgeVVAILGPSGSGKSTLIRLINQLES 74
                44444469999**************986655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.15
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 +++ i+l++EP   L p++  ++ + +k la ++    ++ TH
  CTQ26639.1 176 SSPQIILFDEPTSALDPEMIGEVLQVMKTLAHSGI-TMLVVTH 217
                 56789***************************999.6777777 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00086       0.5       4      22 ..      51      69 ..      49      82 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00086
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 ++i Gpsg+GK+tl++ +
  CTQ26639.1 51 VVAILGPSGSGKSTLIRLI 69
                589************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 1912.41
//
Query:       CTQ26640.1  [L=269]
Description: Extracellular solute-binding protein family 3 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-62  210.7   0.1    2.1e-62  210.5   0.1    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    9.7e-11   41.9   0.0    5.8e-09   36.2   0.0    2.2  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.5   0.1   2.3e-66   2.1e-62       1     224 [.      35     253 ..      35     254 .. 0.96

  Alignments for each domain:
  == domain 1  score: 210.5 bits;  conditional E-value: 2.3e-66
                 EEEEE-S-BTTTBEE-T.TS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHG CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykde.ngeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdask 98 
                 ++v++ +++pPf+ +d+ +  ++G+dvd+a+a+ak lgvk+e+v ++ +++ip l+sgk+D+++a+ititpeR++++dFs+pyf++gq++lv+++++  
  CTQ26640.1  35 VKVATFDANPPFGSVDAkTHHIVGYDVDFAQALAKALGVKLELVATNPANRIPLLQSGKADLIVADITITPERAQVIDFSTPYFVTGQQFLVPAGSP-- 131
                 699**************9**************************99***********************************************7653.. PP

                 TCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE.ECGGCECEEEEEEETTTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  99 issiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv.eeplsseeyaiavrkgds 196
                   +++   + +  ++g+++g+t e++l + ++ +a++ ++d+++ al+aL+ng+v+a+  ds++la+l+++ pdk ++++ +  ls+ee++++v+kg++
  CTQ26640.1 132 -DKLD---EYSKARIGAVKGTTGEQALHQRFP-QARVLSYDDIPLALTALRNGNVQAITQDSTILAGLLAEAPDKAKFKIlPDLLSKEEIGVGVKKGEP 225
                 .3454...77788***************9887.99**************************************************************** PP

                 HHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 197 eLrkainkalaelkadgtlakisekWfg 224
                 +L+ka+n+ l +l ++g+ aki++ Wfg
  CTQ26640.1 226 ALLKAVNDELVKLEKTGEAAKIYDVWFG 253
                 ***************************9 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   6.4e-13   5.8e-09      26     111 ..      54     126 ..      33     129 .. 0.72

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 6.4e-13
                      GGEESHHHHHHHHHHHHHT-EEEEEE-TT-----BETTTTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEE CS
  Lig_chan-Glu_bd  26 eryeGfcidLlkelakklgfkYelklvedgkyGskkekkkewnGmigellekkadlavapltitaeReevvdFtkpfmelgisili 111
                      +++ G+ +d+ ++lak lg+k el  ++        + +      i  l ++kadl+va++tit+eR++v+dF++p+  +g ++l+
       CTQ26640.1  54 HHIVGYDVDFAQALAKALGVKLELVATN--------PAN-----RIPLLQSGKADLIVADITITPERAQVIDFSTPYFVTGQQFLV 126
                      5566777777777777777666665432........222.....26678899****************************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2079.45
//
Query:       CTQ26641.1  [L=125]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 957.92
//
Query:       CTQ26642.1  [L=56]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 446.92
//
Query:       CTQ26643.1  [L=231]
Description: leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.8e-25   87.7   0.0    1.7e-24   86.9   0.0    1.4  1  ABC_tran       ABC transporter
    5.4e-10   39.6   2.3    5.7e-05   23.1   0.1    2.1  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    0.00076   19.0   0.4      0.052   13.0   0.4    2.2  1  SMC_N          RecF/RecN/SMC N terminal domain
     0.0028   17.4   0.1     0.0055   16.5   0.0    1.5  2  AAA_15         AAA ATPase domain
     0.0092   16.3   0.2      0.022   15.1   0.1    1.9  2  AAA_19         AAA domain
  ------ inclusion threshold ------
      0.015   15.8   0.0      0.021   15.3   0.0    1.3  1  AAA_23         AAA domain
      0.016   15.0   0.1      0.033   13.9   0.1    1.5  1  AAA_29         P-loop containing region of AAA domain
      0.025   14.3   0.1      0.067   12.9   0.0    1.7  2  AAA_30         AAA domain
      0.027   14.3   0.0      0.046   13.5   0.0    1.4  1  MukB           MukB N-terminal
      0.047   13.9   0.1       0.25   11.6   0.1    2.1  1  SbcCD_C        Putative exonuclease SbcCD, C subunit
      0.094   12.0   0.1       0.22   10.8   0.0    1.6  2  Zeta_toxin     Zeta toxin
       0.11   12.2   0.0       0.23   11.1   0.0    1.6  1  SRP54          SRP54-type protein, GTPase domain
       0.11   12.8   0.0       0.23   11.8   0.0    1.5  1  AAA_16         AAA ATPase domain
       0.14   11.0   0.0       0.27   10.1   0.0    1.4  1  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
        0.2   10.9   0.1        8.8    5.5   0.0    2.1  2  Oxidored_FMN   NADH:flavin oxidoreductase / NADH oxidase fami


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.0   1.4e-27   1.7e-24       1     136 [.      17     159 ..      17     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 1.4e-27
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren.............esdeei 85 
                 lk v+++++  e+v ++G+nGaGK++ l+ + +l++  +G++ + ++d+++ q+++++r+ ++ +p+  ++f +lt++en               ++++
  CTQ26643.1  17 LKGVDIDVYDREIVTLIGSNGAGKTSTLNGIVNLVR-SSGRVSFLNDDISRsQTHQIVRRGLALVPEGRRVFTNLTIEENlrmgaynnlagyaRLRDRM 114
                 7899*******************************8.7************999****************************999998877666666667 PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++  +l+     ++ +     ++SgG++q++a+aral+++p ll+lDEp+
  CTQ26643.1 115 YALFPRLKERR--HQMA----GTMSGGEQQMLAIARALMSEPVLLMLDEPS 159
                 77766666444..5555....*****************************5 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4   4.4e-06    0.0053       2      51 ..      30      79 ..      29     102 .. 0.88
   2 !   23.1   0.1   4.8e-08   5.7e-05     236     293 ..     131     185 ..     101     191 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.4e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldl 51
                  liG Ng+GK++ L  +  l r  + v +l+d+ s++++ +++++ l l
  CTQ26643.1 30 VTLIGSNGAGKTSTLNGIVNLVRSSGRVSFLNDDISRSQTHQIVRRGLAL 79
                679****************9999999999999999999999988887765 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 4.8e-08
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvi 293
                  +S G +++la++ al + +    ll +DEp +gL Pk++ +l++++k+l++++  v+
  CTQ26643.1 131 TMSGGEQQMLAIARALMSEP---VLLMLDEPSLGLAPKIVGELFGIIKQLREENMTVL 185
                 68*******99999999999...68***********************9998766665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.4   4.4e-05     0.052      23     189 ..      26     180 ..      14     209 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.4e-05
                 TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSS.SSCEEEEEEEETTSEEEEEETTEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkie.keevsisrrvkrkgeseykingkevtk 120
                 ++++  ++G+NG+GK++ l+ i   L  +s    r + l+d i++s++++ v ++   +    e++++ ++ + e +++  ++++     ++  ++  +
  CTQ26643.1  26 DREIVTLIGSNGAGKTSTLNGI-VNLVRSSG---RVSFLNDDISRSQTHQIVRRGLALV---PEGRRVFTNlTIEENLRMGAYNNLAGYARL--RDRMY 115
                 6778899************999.44443444...8888888888865655555554444...344442211011222222222222222222..22222 PP

                 HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn 189
                 +   +l e+ +    ++SgGe++++a+a  +    ++   l +lDe    L  k v ++  ++k+ +++
  CTQ26643.1 116 ALFPRLKERRHQMAGTMSGGEQQMLAIARAL----MSEPVLLMLDEPSLGLAPKIVGELFGIIKQLREE 180
                 2233333333344457888888887776442....3334466777777777777777777777766654 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.6e-06    0.0055      14      50 ..      17      54 ..      15      95 .. 0.79
   2 ?   -2.4   0.0       2.6     3e+03     323     353 ..     149     179 ..     139     185 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.6e-06
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsilealdlFlnnk 50
                lk v+id+ +  + +liG N++GK+s l+ +  +   +
  CTQ26643.1 17 LKGVDIDVYDReIVTLIGSNGAGKTSTLNGIVNLVRSS 54
                5667777776679****************998887766 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.6
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelan 353
                 ++v+l+++EP + L p+   +l+  +k l +
  CTQ26643.1 149 EPVLLMLDEPSLGLAPKIVGELFGIIKQLRE 179
                 6799999999999888877777766666655 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.9e-05     0.022       9      41 ..      26      58 ..      20     187 .. 0.90
   2 ?   -1.0   0.0       1.6     2e+03      34      62 ..     173     201 ..     138     219 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-05
      AAA_19  9 kekvllvtaGpGtGKTrvlkhivallvelggvk 41
                 ++++ +++  G GKT +l++iv+l+ + g+v+
  CTQ26643.1 26 DREIVTLIGSNGAGKTSTLNGIVNLVRSSGRVS 58
                578899******************999988775 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
      AAA_19  34 lvelggvkpeeillvaftgrAakelrerl 62 
                 ++++ +++  ++llv  +  Aa  +++r 
  CTQ26643.1 173 IIKQLREENMTVLLVEQNATAALAIADRA 201
                 33333333456666666666666666665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   1.8e-05     0.021      10      39 ..      17      47 ..      11     103 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-05
      AAA_23 10 frdqeidF.skgltlItGpNGaGKTTildAi 39
                +++++id  ++ ++ ++G NGaGKT+ l+ i
  CTQ26643.1 17 LKGVDIDVyDREIVTLIGSNGAGKTSTLNGI 47
                678889999999****************998 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.8e-05     0.033      14      54 ..      19      59 ..      11      62 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.8e-05
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTllDAiqalLvpakkvrf 54
                g +i++  ++++ l+G +G+GK++ l  i  l  ++ +v+f
  CTQ26643.1 19 GVDIDVYDREIVTLIGSNGAGKTSTLNGIVNLVRSSGRVSF 59
                4455555555999************9999999888877766 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.6e-05     0.067      19      47 ..      28      56 ..      23      83 .. 0.87
   2 ?   -2.2   0.0       2.5   2.9e+03      91      96 ..     152     157 ..     120     191 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.6e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaagg 47
                 +++l G  G+GKt +l++++++++++g+
  CTQ26643.1 28 EIVTLIGSNGAGKTSTLNGIVNLVRSSGR 56
                58899*******************99983 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
      AAA_30  91 llivDE 96 
                 ll+ DE
  CTQ26643.1 152 LLMLDE 157
                 344444 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.8e-05     0.046      25      61 ..      26      61 ..      15      77 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.8e-05
                HHHHHHHHS--SHHHHHHHHHHHHHHS--TTT----- CS
        MukB 25 delvttlsGgnGaGksttmaafvtaliPdlsllhfrn 61
                d+ + tl G+nGaGk+ t+ ++v  l+    ++ f n
  CTQ26643.1 26 DREIVTLIGSNGAGKTSTLNGIV-NLVRSSGRVSFLN 61
                78999*************98865.5777777777766 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00021      0.25      25      43 ..     124     142 ..     119     176 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
     SbcCD_C  25 elsrssgtlSGGekqflay 43 
                 + ++++gt+SGGe+q+la 
  CTQ26643.1 124 RRHQMAGTMSGGEQQMLAI 142
                 5789**********87653 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00018      0.22      18      55 ..      29      66 ..      24      73 .. 0.80
   2 ?   -3.7   0.0       5.2   6.2e+03     130     153 ..     187     209 ..     180     218 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
  Zeta_toxin 18 lillgGqpGAGKselaellkdelerqgnvvrldpDdlR 55
                ++ l G+ GAGK+++++ + + +++ g+v  l+ D  R
  CTQ26643.1 29 IVTLIGSNGAGKTSTLNGIVNLVRSSGRVSFLNDDISR 66
                67788**************9999766666666666555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.2
  Zeta_toxin 130 avkkelSrlgvldRyeeevaegRl 153
                   ++++++l ++dR     ++gR+
  CTQ26643.1 187 VEQNATAALAIADRAYVL-ENGRI 209
                 445667777778876655.33455 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00019      0.23       3      30 ..      29      56 ..      27      71 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
                EEEEEESTTSSHHHHHHHHHHHHHHTTS CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegk 30
                ++ l+G +GaGKT+tl  + +l++++g+
  CTQ26643.1 29 IVTLIGSNGAGKTSTLNGIVNLVRSSGR 56
                7889************999998887764 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00019      0.23      25      76 ..      28      87 ..      21     158 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
      AAA_16 25 elvllsGesGvGKsslvrellralekdg.giflrgkcdql......esaipysa.laqal 76
                e+v l+G  G GK+s ++ + + ++ +g + fl+ +  ++      ++++++++   +++
  CTQ26643.1 28 EIVTLIGSNGAGKTSTLNGIVNLVRSSGrVSFLNDDISRSqthqivRRGLALVPeGRRVF 87
                7999*****************766666546666666666621111222222233222222 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00022      0.27      18      44 ..      30      56 ..      18      66 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00022
  TrwB_AAD_bind 18 ilivGttGsGKtqalekllrairargd 44
                   + ++G+ G+GKt +l+++++ +r+ g 
     CTQ26643.1 30 VTLIGSNGAGKTSTLNGIVNLVRSSGR 56
                   679*******************99875 PP

>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.035        42     305     332 ..     126     153 ..     122     156 .. 0.87
   2 ?    5.5   0.0    0.0073       8.8     307     331 ..     200     224 ..     176     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.035
                   HHHHHHHHTTS-SEEEESTHHHH-TTHH CS
  Oxidored_FMN 305 ekaaeivaegeadLvamgRefladpdlv 332
                   +++a +++ ge+++ a++R+++++p l+
    CTQ26643.1 126 HQMAGTMSGGEQQMLAIARALMSEPVLL 153
                   4489999******************885 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0073
                   HHHHHHTTS-SEEEESTHHHH-TTH CS
  Oxidored_FMN 307 aaeivaegeadLvamgRefladpdl 331
                    a ++++g+++L + +Re+l +p++
    CTQ26643.1 200 RAYVLENGRITLSGAAREMLTNPEI 224
                   468999*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1584.06
//
Query:       CTQ26644.1  [L=260]
Description: leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-34  117.9   0.0    5.6e-34  117.6   0.0    1.1  1  ABC_tran      ABC transporter
    5.8e-08   32.9   3.0      0.005   16.7   1.1    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    2.6e-05   24.8   0.3    4.3e-05   24.1   0.3    1.2  1  AAA_23        AAA domain
     0.0014   18.3   0.2      0.052   13.3   0.0    2.1  2  AAA_30        AAA domain
     0.0017   18.1   0.0     0.0037   17.0   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
     0.0033   16.9   0.2       0.92    8.9   0.1    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
     0.0057   16.6   0.0     0.0097   15.8   0.0    1.4  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
     0.0078   16.5   0.5       0.19   12.0   0.5    2.2  1  AAA_22        AAA domain
     0.0087   16.0   0.0      0.015   15.2   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.013   14.8   0.0      0.023   13.9   0.0    1.4  1  Zeta_toxin    Zeta toxin
      0.035   13.8   0.1        3.3    7.4   0.0    2.9  3  IstB_IS21     IstB-like ATP binding protein
      0.054   13.9   0.2       0.29   11.5   0.1    2.1  2  AAA           ATPase family associated with various cellular 
      0.061   13.4   0.4       0.13   12.4   0.4    1.6  1  MMR_HSR1      50S ribosome-binding GTPase
      0.069   12.9   0.2       0.26   11.0   0.1    1.8  2  AAA_15        AAA ATPase domain
      0.085   12.0   0.0       0.38    9.9   0.0    1.8  2  NB-ARC        NB-ARC domain
        0.1   12.4   0.0       0.24   11.2   0.0    1.6  2  GPW_gp25      Gene 25-like lysozyme
       0.11   11.1   0.1       0.15   10.7   0.1    1.1  1  AAA_13        AAA domain
       0.13   11.7   0.0       0.35   10.3   0.0    1.7  2  SRPRB         Signal recognition particle receptor beta subun
       0.26   10.9   0.6       0.46   10.1   0.1    1.7  2  cobW          CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.0   5.9e-37   5.6e-34       2     136 ..      24     183 ..      23     184 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 5.9e-37
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren.................... 79 
                 +nvs+++ e e+ +++G+nGaGK+tL+++++ ++kpt+G+++l g++lk  ++ +++++ i+  +q+ +lf+ +tv en                    
  CTQ26644.1  24 DNVSFHVDEAEIFGLIGPNGAGKTTLFNVITANYKPTSGSVTLAGTSLKGlKPNQVVNAGIARTFQNIRLFNSMTVLENvmvgldrasryslleaalhi 122
                 8************************************************************************************************** PP

                 ........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                         ++++++ ++l+ +g+ ++++  +    ++LS+G +++v++aral+++pkllllDEp 
  CTQ26644.1 123 gryfpaerAAKAKAMAILEDIGIAHFAHMQA----TNLSYGNQRKVEIARALATAPKLLLLDEPA 183
                 *****9988889999999****999999998....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.1   5.3e-06     0.005       1      19 [.      35      53 ..      35      70 .. 0.89
   2 !   16.1   0.0   7.8e-06    0.0074     234     282 ..     153     198 ..     145     213 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.3e-06
      AAA_21  1 lnvliGpNgsGKSnLLdal 19
                + +liGpNg+GK++L+  +
  CTQ26644.1 35 IFGLIGPNGAGKTTLFNVI 53
                578************9887 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 7.8e-06
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell 282
                 a++lS G +r   ++ al+ a+   +lll+DEp +g++Pk ++ l+el+
  CTQ26644.1 153 ATNLSYGNQRKVEIARALATAP---KLLLLDEPAAGMNPKETEDLAELI 198
                 6789999999999999999999...9********************998 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.3   4.5e-08   4.3e-05       6      40 ..      19      54 ..      14      62 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 4.5e-08
      AAA_23  6 nfrsfrdqeidF.skgltlItGpNGaGKTTildAik 40
                ++r +++++++  +  ++ ++GpNGaGKTT+++ i+
  CTQ26644.1 19 GLRAIDNVSFHVdEAEIFGLIGPNGAGKTTLFNVIT 54
                5667777777777779*****************998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.5e-05     0.052      16      53 ..      31      68 ..      22     104 .. 0.84
   2 ?    3.3   0.1     0.062        58      56     120 ..     131     210 ..     114     214 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.5e-05
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaaggrviglA 53
                +++ +  l Gp G+GKtt+ +++++ ++   g+v ++ 
  CTQ26644.1 31 DEAEIFGLIGPNGAGKTTLFNVITANYKPTSGSVTLAG 68
                566688899***************99999866666554 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.062
      AAA_30  56 gkaAkvLa..eelgi...eastiakllkrlk.....grarlepgtllivDE..agmv..dtkqlaallkaaek.agakvi 120
                 ++ Ak++a  e++gi   + +   +l + ++     +ra  ++ +ll+ DE  agm    t++la+l+ ++++ ++ +v+
  CTQ26644.1 131 AAKAKAMAilEDIGIahfAHMQATNLSYGNQrkveiARALATAPKLLLLDEpaAGMNpkETEDLAELIFRMRHdYQLSVL 210
                 44444454446777544433333333333336778755555566*******87788788899999998888773355555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.9e-06    0.0037      13      43 ..      24      54 ..      19      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.9e-06
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDAiq 43
                d+ ++++d+++++ l+Gp+G+GK+Tl+  i+
  CTQ26644.1 24 DNVSFHVDEAEIFGLIGPNGAGKTTLFNVIT 54
                67788999999999************96655 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00097      0.92      26      44 ..      35      53 ..      16      58 .. 0.82
   2 !    6.4   0.0    0.0055       5.2     136     201 ..     155     216 ..      60     231 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00097
                EEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAi 44
                +  ++GpNG+GK+ l++ i
  CTQ26644.1 35 IFGLIGPNGAGKTTLFNVI 53
                5579*********999876 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0055
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreem 201
                 +LS G++  v +a  +A+       l llDe +a +  k+++ +ael+ + +++ Q+ v  ++++m
  CTQ26644.1 155 NLSYGNQRKVEIARALATA----PKLLLLDEPAAGMNPKETEDLAELIFRMRHDYQLSVLLIEHDM 216
                 6777776666666666653....34899****************************9888777766 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     1e-05    0.0097       3      23 .]     235     255 ..     233     255 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1e-05
  BCA_ABC_TP_C   3 IAeGtPaEvrndPrVieAYLG 23 
                   + +G  aE   +P+Vi AYLG
    CTQ26644.1 235 LFSGLMAEAIQHPDVISAYLG 255
                   6689999999**********9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.5    0.0002      0.19       6     112 ..      34     197 ..      30     220 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0002
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.............erpevvfvtlpsstsskdllrellralglelka..................... 70 
                  i  ++G+ G+GKTtl + ++ +++                    ++ +vv                ++r +++ +                       
  CTQ26644.1  34 EIFGLIGPNGAGKTTLFNVITANYKPT----SgsvtlagtslkglKPNQVV-------------NAGIARTFQNIRLFnsmtvlenvmvgldrasrysl 115
                 566699************999998322....12333555555554222222.............22233333322222222222222222222334455 PP

      AAA_22  71 ....................................erlsseellealeqalrarav.ielliiDEaqh.lr..seealeeL 112
                                                     +  +++   ++  + +ra a+ ++ll++DE    ++  + e l eL
  CTQ26644.1 116 leaalhigryfpaeraakakamailedigiahfahmQATNLSYGNQRKVEIARALATaPKLLLLDEPAAgMNpkETEDLAEL 197
                 5555555555566666666666666666666666644444444446666666666666667777776665654324444444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.5e-05     0.015      88     127 ..      21      61 ..       3      70 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-05
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpelelkt 127
                  +++++++ ++++ ++  l+G+ G+GK+tL n+++ + +   
   CTQ26644.1  21 RAIDNVSFHVDEaEIFGLIGPNGAGKTTLFNVITANYKPTS 61 
                  56788888888889999****************98866555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.5e-05     0.023      23      60 ..      40      77 ..      28      98 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.5e-05
  Zeta_toxin 23 GqpGAGKselaellkdelerqgnvvrldpDdlRelhPe 60
                G  GAGK++l + ++++ +++++ v+l +++l+ l P+
  CTQ26644.1 40 GPNGAGKTTLFNVITANYKPTSGSVTLAGTSLKGLKPN 77
                889******************************99998 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0034       3.3      43      64 ..      29      50 ..      14      66 .. 0.82
   2 ?    1.1   0.0       0.3   2.8e+02      89     130 ..     115     156 ..      97     159 .. 0.85
   3 ?    1.2   0.0      0.28   2.6e+02     103     146 ..     168     213 ..     157     220 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0034
   IstB_IS21 43 fiekkenivllGpsGvGKshla 64
                +++++e + l+Gp G+GK+ l 
  CTQ26644.1 29 HVDEAEIFGLIGPNGAGKTTLF 50
                388999999**********885 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.3
   IstB_IS21  89 elkrarrdgklaralkrllkvdllilDdlgllpldqaeaell 130
                  l++a + g++  a ++  + ++ il d+g+ ++ + +a++l
  CTQ26644.1 115 LLEAALHIGRYFPAERAAKAKAMAILEDIGIAHFAHMQATNL 156
                 678888889998888888899999******999988777655 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.28
   IstB_IS21 103 lkrllkvdllilDd..lgllpldqaeaellfeviekryerrsiiit 146
                  +  ++++ll+lD+   g++p + ++ ++l   + + y+ + ++i 
  CTQ26644.1 168 RALATAPKLLLLDEpaAGMNPKETEDLAELIFRMRHDYQLSVLLIE 213
                 333456799****943456666655544443334555666655555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00031      0.29       3      35 ..      38      72 ..      36     105 .. 0.64
   2 ?   -0.0   0.0       1.2   1.1e+03      46      67 ..     166     182 ..     134     214 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00031
                EESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCS CS
         AAA  3 lyGppGtGKTllakavakelg..vefleisgsell 35
                l+Gp G GKT+l + +  + +  +  +++ g++l 
  CTQ26644.1 38 LIGPNGAGKTTLFNVITANYKptSGSVTLAGTSLK 72
                89**************9997533223344433333 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.2
                 HHHHHHHHHHTS.TSEEEEEETG CS
         AAA  46 irelfkeakeka.kpsilfiDEi 67 
                 i+      ++ a +p+ l++DE 
  CTQ26644.1 166 IA------RALAtAPKLLLLDEP 182
                 33......333334778888874 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   0.00013      0.13       3      23 ..      37      58 ..      35      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
                EEEESTTSSHHHHHHHHHTS.T CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge.k 23
                +++G   +GK+tL+n +t + k
  CTQ26644.1 37 GLIGPNGAGKTTLFNVITANyK 58
                89***************98642 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00027      0.26      12      43 ..      21      53 ..      16      96 .. 0.88
   2 ?   -0.6   0.0      0.89   8.4e+02     323     350 ..     173     200 ..     159     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00027
      AAA_15 12 Rslkdveidlsee.ltvliGkNnsGKSsileal 43
                R++++v+ +++e  +  liG+N++GK+++ +++
  CTQ26644.1 21 RAIDNVSFHVDEAeIFGLIGPNGAGKTTLFNVI 53
                778888888888768889**********99888 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.89
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllke 350
                  +++ll++EP a   p+  + l++l+ +
  CTQ26644.1 173 APKLLLLDEPAAGMNPKETEDLAELIFR 200
                 5789**************9999999876 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00041      0.38      16      45 ..      31      58 ..      20      64 .. 0.81
   2 ?   -0.7   0.0      0.69   6.5e+02      85     110 ..     155     180 ..     135     182 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00041
                TTSCSEEEEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC 16 delqslvvalvGmgGvGKttlakqilnksd 45
                de +  + +l G  G GKttl++ i  +++
  CTQ26644.1 31 DEAE--IFGLIGPNGAGKTTLFNVITANYK 58
                5666..99**************99987755 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.69
                 SS-STTSHHHHHHHHCCCTTEEEEEE CS
      NB-ARC  85 ekeeveslkrklvrlLltkrfllvlD 110
                 + + ++++k ++ r+L t   ll+lD
  CTQ26644.1 155 NLSYGNQRKVEIARALATAPKLLLLD 180
                 4444455899*********9999999 PP

>> GPW_gp25  Gene 25-like lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.9   6.5e+03      21      30 ..     151     160 ..     136     173 .. 0.50
   2 ?   11.2   0.0   0.00026      0.24      18      49 ..     221     252 ..     191     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.9
                 SSTT-TT-SB CS
    GPW_gp25  21 ervsvlnyGl 30 
                  ++  l yG 
  CTQ26644.1 151 MQATNLSYGN 160
                 3333333332 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00026
                 BTTSSTT-TT-SBGGGHHHHCS--CHHHHHHH CS
    GPW_gp25  18 fpgervsvlnyGlpllallfaslsedreriar 49 
                 +  erv+vl+yG pl+++l a+  +  + i +
  CTQ26644.1 221 RLCERVMVLEYGKPLFSGLMAEAIQHPDVISA 252
                 6779***************9988766666655 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00016      0.15      23      75 ..      40     103 ..      33     117 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
      AAA_13  23 GwNGaGKTtLSrllrslelgetepkfangsi..............eitnge.......eldirVfNrdFveenl 75 
                 G NGaGKTtL +++        +p  ++gs+                            ++ir fN+  v en+
  CTQ26644.1  40 GPNGAGKTTLFNVITANY----KP--TSGSVtlagtslkglkpnqV----VnagiartFQNIRLFNSMTVLENV 103
                 99************9852....22..33334334445565555532....033344449999999998887776 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00037      0.35       5      34 ..      35      63 ..      31      80 .. 0.76
   2 ?   -2.1   0.0       2.3   2.2e+03      87     102 ..     186     201 ..     183     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00037
                EEEEE-STTSSHHHHHHHHHHSS---B--- CS
       SRPRB  5 avllvGlsdsGKTslftrLttdsvkktvtS 34
                ++ l+G+  +GKT+lf+ +t + +k+t  S
  CTQ26644.1 35 IFGLIGPNGAGKTTLFNVITAN-YKPTSGS 63
                56699************98765.5555544 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.3
                 S-HHHHHHHHHHHHHH CS
       SRPRB  87 idpkevkevAEllyei 102
                 ++pke ++ AEl++ +
  CTQ26644.1 186 MNPKETEDLAELIFRM 201
                 689********99865 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00049      0.46       3      24 ..      36      57 ..      34      66 .. 0.82
   2 ?   -3.1   0.0       5.3     5e+03      69      89 ..     194     213 ..     189     215 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00049
                EEEEESTTCCHHHHHHHHHCT- CS
        cobW  3 tvltGflGsGKTtLlnhllenr 24
                ++l G+ G+GKTtL n +++n 
  CTQ26644.1 36 FGLIGPNGAGKTTLFNVITANY 57
                6789************998765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.3
                 HHHHHHHHHHHHTT-SEEEEE CS
        cobW  69 llkelealeereerldviliE 89 
                 l + + ++ +++ +l+v+liE
  CTQ26644.1 194 LAELIFRMRHDY-QLSVLLIE 213
                 444444444555.66666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1908.53
//
Query:       CTQ26645.1  [L=349]
Description: High-affinity branched-chain amino acid transport [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-36  126.4  28.1    1.1e-36  126.4  28.1    1.6  2  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.4      0.13   2.4e+03      12      26 ..      15      29 ..       3      33 .. 0.59
   2 !  126.4  28.1   6.2e-41   1.1e-36       1     268 []      35     323 ..      35     323 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.13
  BPD_transp_2 12 laiaAlGlalvfgia 26
                  lai+++++al+ gi 
    CTQ26645.1 15 LAIIVICIALLAGIN 29
                  455555555555554 PP

  == domain 2  score: 126.4 bits;  conditional E-value: 6.2e-41
  BPD_transp_2   1 gilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl...................lllallvallvgaavglllgllvl 78 
                   +i+++++++ i+ i+A++++l+ g++G+++l  +gf+a+Gayv+all+ + +s                    +l all++ l++aa++++l+++v 
    CTQ26645.1  35 YIVRVISTIFIFMILAVSYNLINGVTGQLSLEPNGFVAVGAYVTALLILSSDSKvdmfemaapspwilslhagFLPALLISGLCAAALAVCLAVPVF 131
                   588999***********************************************9*******************999********************* PP

  BPD_transp_2  79 rlkvdeliitllllsvlvgltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinv 175
                   r++ d+l+i++l++ +++ ++++++ +it+g  g + ++      + ll++ +     l++ll+  ++l l+ +++Gr ++a++++e+aa a+G+n+
    CTQ26645.1 132 RVRGDYLAIVTLGFGFIIKILAINNPQITNGAIGLNDIPQ----QPHLLFWCG-----LFALLATGMILQLVWSKYGRMMKAIRDDEDAAIAMGVNT 219
                   **********************999888888887777654....566777774.....8999999******************************** PP

  BPD_transp_2 176 krvklltfvisgalAglaGallalllgsipp.nigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgip...........telarvll 260
                   +r+k+ +f++s+++ g+ G lla ll++i+p  ++++l+f+ +++ vlGg+gs  g+++G+++++ +++ +l +l +p           + l++v++
    CTQ26645.1 220 FRIKTCAFATSAFFEGIGGGLLASLLTTISPgLFDFMLTFQLLIIIVLGGLGSTTGALLGTVLVVGSSE-WLRFLDQPlqffghdlgayPGLRMVVF 315
                   *********************************************************************.66677774455555666679******* PP

  BPD_transp_2 261 gallilvl 268
                    +ll++++
    CTQ26645.1 316 SLLLLIIM 323
                   ***99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2616.81
//
Query:       CTQ26646.1  [L=299]
Description: leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-47  160.3  42.9    5.7e-47  160.1  42.9    1.0  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1  42.9   3.2e-51   5.7e-47       2     268 .]      10     281 ..       9     281 .. 0.92

  Alignments for each domain:
  == domain 1  score: 160.1 bits;  conditional E-value: 3.2e-51
  BPD_transp_2   2 ilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdel.....iitlllls 93 
                   ++n+++l++ +a++A+G+++v+g++++in++h+ +m++Ga++++ l  +++ ++ +a+ + l++++++g+l+ +   r   +       i+++++++
    CTQ26646.1  10 VVNGMSLGGMYALIAIGYTMVYGVLRLINFAHADVMMVGAFSTLFLFSSVGLPFGVAVFLTLGLCGLFGMLIDRVAYRPLRQASkismlITAIGVSF 106
                   689************************************************9999999999999999999999988887555443444388888888 PP

  BPD_transp_2  94 vlvgltlllltgitsgvkgqssvkellgfagallsflsaviv.llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgal 189
                   +l +l++ +l+g++s  ++ + +   ++ +g  +++ +a+iv l+++ll+la+l+ll+rtr+G+a+rav+ + +++r++Gi+ +r++ l+f++++ l
    CTQ26646.1 107 FLENLFN-VLFGGSSRFFSAPDFFNQTRAFGSVIITNVAWIVpLITVLLLLAILWLLYRTRYGMAIRAVAFDVNTVRLMGIDANRIISLVFALGSSL 202
                   8888888.78888888888888888888888888888888889****************************************************** PP

  BPD_transp_2 190 AglaGallalllgsippnigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   A+l G++++ ++ +i+p +gv +g++a+aa+vlGg+gs+ g+v+G++i+g+ + ++ ++++    +++++ ++ lilvl
    CTQ26646.1 203 AALGGVFYSISYPTIDPLMGVLIGLKAFAAAVLGGIGSVTGAVLGGFILGFTEVVAVAIFPELGGYKDAFAFLFLILVL 281
                   ************************************************************999**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2132.46
//
Query:       CTQ26647.1  [L=378]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-50  170.5   5.8    9.2e-50  170.2   5.8    1.1  1  Peripla_BP_6    Periplasmic binding protein
    5.6e-19   68.5   0.6    5.6e-19   68.5   0.6    1.6  2  ANF_receptor    Receptor family ligand binding region
    4.5e-10   39.0   2.0    5.8e-09   35.4   2.0    2.0  1  Peripla_BP_5    Periplasmic binding protein domain
    1.6e-06   27.3   2.6    4.2e-06   25.9   2.6    1.8  1  LppC            LppC putative lipoprotein
  ------ inclusion threshold ------
      0.068   13.5   0.3        0.2   12.0   0.3    1.8  1  Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. a


Domain annotation for each model (and alignments):
>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.2   5.8   2.6e-53   9.2e-50       1     342 []      28     369 ..      28     369 .. 0.93

  Alignments for each domain:
  == domain 1  score: 170.2 bits;  conditional E-value: 2.6e-53
                   EEEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEE CS
  Peripla_BP_6   1 pikiGlltplsGpyassgksllagaqaafeeiNaaGGinGrkielverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvi 97 
                   +ikiG++ plsG+++ +g+++ +g +   +      + nG +i+l++ Dd++d  +aa+a++rlv++d+vda++g ++s+ ++a+++++++ + p++
    CTQ26647.1  28 EIKIGVVLPLSGALSGYGQPSQKGLDIIQAIT-PTLK-NGDTIKLIVIDDKSDKVEAANAMQRLVSSDKVDAVIGEVTSSNTLAMTKIADDSKTPLV 122
                   69**********************98766655.3333.8********************************************************** PP

                   ESS-HHC..CTTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEEEEES.SHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT- CS
  Peripla_BP_6  98 gpagltg..ekcspyvfslgpsysaqasalveylakelggkkvalvyad.yafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlqikaaga 191
                   + +++++  + ++pyv ++++s+s q+  +++ + ++l++k++a+v +  + ++  +++a++  + ++Gg++  e++ p g+ df+aq++ +ka+++
    CTQ26647.1 123 SSTATNDrvTRNHPYVSRVCFSDSFQGVVGANLASRDLKAKTAAIVFDSsNDYSVGLAKAFRTQFLKNGGTIPIEVQAPGGSKDFKAQLASVKAKNV 219
                   *776665458**********************88899*******998665*********************999*****9***************** PP

                   SEEEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHHHHHHHHHTTEEEEESCSTC..CCSHHHHHHHHHHHHHHTTGGC--HHHHHHHHHH CS
  Peripla_BP_6 192 davllagtgadlaallkaaaeaGldakrillvswsgseedlkalggeaaegvlavtpyfpd..ldnpavrafvaayeaayggapppsqfaaggyiaa 286
                   d +++  + +  a ++ + ++ Gl+ + + ++   ++++    +g++a +g++++ +y p+   ++pa + f +a+ea+y +  p+++++a + +a 
    CTQ26647.1 220 DMIYMPIYYTEGALIAVQSKQLGLNKP-VVGGDGLAADQVFFDVGKDAVNGYMTTDYYSPNakEQTPAGETFIKAWEAKYQQ--PTHTWGAMAADAY 313
                   *************************75.66666678899*********************85678****************9..599********** PP

                   HHHHHHHHCCTH.CCHHHHHHHHHHS-.BECCCTCCBEECTTSBEE--EEEEEE-TSS CS
  Peripla_BP_6 287 dlllealkaags.ltreavraaleslg.fdgllgplkftaedhqasrpvyvvqvdggk 342
                    ++++a+ ++ +  +r +v +++++ + f g++g+   t +++ a+r++ + +v++gk
    CTQ26647.1 314 NVIVNAMNQCSDpHDRVCVNEKIRATKdFQGVTGT--LTLQNGDAIRSAVINEVKDGK 369
                   **********876*********************9..6789*************9986 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.86   3.1e+03      46      64 ..      10      28 ..       7      29 .. 0.81
   2 !   68.5   0.6   1.6e-22   5.6e-19      17     347 ..      60     362 ..      54     369 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.86
                  HCCCCEEEEEE-SSHHHHH CS
  ANF_receptor 46 flkgkvvaviGpssssvsd 64
                  ++++ v+a++G+ss ++++
    CTQ26647.1 10 LMATLVAALVGASSAQAAE 28
                  67777********998876 PP

  == domain 2  score: 68.5 bits;  conditional E-value: 1.6e-22
                   TTSSTTEEEEEEEEE-TT-HHHHHHHHHHHCCC.CEEEEEE-SSHHHHHHHHHHHCCTT-EEEESS---GGGG-TTTTTTEEESS--CHHHHHHHHH CS
  ANF_receptor  17 pnllpgiklgyeiidtccdfslaleaaldflkg.kvvaviGpssssvsdavaslanlfkiPvisygstspelsdknryptflrtvpsdtsqaqAivd 112
                   p+l +g ++ +++id+++d + a +a++ ++   kv+aviG ++ss + a+ ++a+  k P++s ++t++ ++    +p++ r+  sd++q+ + ++
    CTQ26647.1  60 PTLKNGDTIKLIVIDDKSDKVEAANAMQRLVSSdKVDAVIGEVTSSNTLAMTKIADDSKTPLVSSTATNDRVTRN--HPYVSRVCFSDSFQGVVGAN 154
                   6778889*************************967****************************999999996664..5677**************** PP

                   HHH.HTT--EEEEEEESS.HHHHHHHHHHHHHHHHTT-EEEEEEEEST.CHHHCHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHHHHHTTS-STTE CS
  ANF_receptor 113 ilk.hfgWkkvaliysdd.dygesglqaleeeleergicvalkekipe.ssnddevvrkllkeikskarvivlfcssedarellkaarrlgltgeey 206
                   +    ++ k++a++ +++ dy  ++++a+++++ ++g ++  + + p  s++++  +++++   +++ + i++  + ++   +  + ++lgl+ +  
    CTQ26647.1 155 LASrDLKAKTAAIVFDSSnDYSVGLAKAFRTQFLKNGGTIPIEVQAPGgSKDFKAQLASVK---AKNVDMIYMPIYYTEGALIAVQSKQLGLNKP-- 246
                   *9879**********99999*********************99999955554444444444...8899*************************96.. PP

                   EEEETCHCCCECTTS-CC..HHHHHTT-EEEEE--B-HHHHH....HHHHST--CCCSSSTCCGSTTCCHHHHH...HHHHHHHHHHHHHHHCHHSS CS
  ANF_receptor 207 vwiasdawtsslvldkpeltgleaaegvlgfrlkdpnspkfs....efldkreklsdekqnyenegkeqisyqaalmYdaVyllaeAlnkllrkkkp 299
                     ++ d+++++ v  +    g +a+ g ++  +++pn ++ +    +f+ k +++      y++ +++     a++  da  ++++A+n+       
    CTQ26647.1 247 -VVGGDGLAADQVFFDV---GKDAVNGYMTTDYYSPNAKEQTpageTFI-KAWEA-----KYQQPTHTW---GAMA-ADAYNVIVNAMNQCS----- 324
                   .8889999999999976...8999***9999997777666541111555.33333.....233333332...2222.588888889999888..... PP

                   SHCCB-HHHHCCHHHHHHHHHHHT-EEEETTSCEEB-TTSBBE-EEEE CS
  ANF_receptor 300 gralscntlkpweggqkllrylrnvnfeGltGdvkfdengdrvptydi 347
                         + +++++  +k+     +  f+G+tG++++ +ngd + +  i
    CTQ26647.1 325 ------DPHDRVCVNEKIR---ATKDFQGVTGTLTL-QNGDAIRSAVI 362
                   ......2233555555655...34569999999999.99998866555 PP

>> Peripla_BP_5  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   2.0   1.6e-12   5.8e-09       1     337 [.      29     365 ..      29     375 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.6e-12
  Peripla_BP_5   1 ikvGvLhSlsGtmaisekslkdaallaieeinaagGvlgrkieavvvdpasdwelfaekaeklieedkvevvfGcwtSasRkavlpvveelnalLfY 97 
                   ik+Gv+  lsG+++   +  +++  + i+ i + +  +g +i+ +v d +sd    a+  ++l+++dkv++v+G  tS+   a+ ++ +++++ L  
    CTQ26647.1  29 IKIGVVLPLSGALSGYGQPSQKGLDI-IQAI-TPTLKNGDTIKLIVIDDKSDKVEAANAMQRLVSSDKVDAVIGEVTSSNTLAMTKIADDSKTPLVS 123
                   89*********999999888776543.4444.4444689*****************************************************99998 PP

  Peripla_BP_5  98 pvqYEGeEssknviYtGaapnqqaipav...dyllselg.akrvflvGsdyvypretnrilkallkakggevvgeeYlplgssdvqkivakikkakp 190
                    +      + +n  Y + +    +++ v   + + ++l  ++ +++  s + y+   ++ ++ ++ ++gg++  e  +p gs+d+++ +a++k+++ 
    CTQ26647.1 124 STATN-DRVTRNHPYVSRVCFSDSFQGVvgaNLASRDLKaKTAAIVFDSSNDYSVGLAKAFRTQFLKNGGTIPIEVQAPGGSKDFKAQLASVKAKNV 219
                   88765.56889999988876655555431213333333345556677999*********************************************** PP

  Peripla_BP_5 191 dvvlstinGdsnvafykelkeagikaekipvvs.ls.vaeeelaaidaealvGhlaawnYfqsv..dtpenkafvakfkarvgedrvtndpmeaayi 283
                   d+++  i  ++ + +  + k+ g+++   pvv      a++ + +++++a+ G +++  Y      +tp+ ++f+++++a++++ + t   m a  +
    CTQ26647.1 220 DMIYMPIYYTEGALIAVQSKQLGLNK---PVVGgDGlAADQVFFDVGKDAVNGYMTTDYYSPNAkeQTPAGETFIKAWEAKYQQPTHTWGAMAADAY 313
                   *******9998888877777777765...5544133146677789********99999887665226999**************9999888888544 PP

  Peripla_BP_5 284 qvklwaqAvekagst.dvekvreallg.qelkapeGevkidpenhhlsktvrigki 337
                     +++++A++++    d   v+e+++  + ++  +G++++++    + +++ i ++
    CTQ26647.1 314 --NVIVNAMNQCSDPhDRVCVNEKIRAtKDFQGVTGTLTLQN--GDAIRSAVINEV 365
                   ..5678999998654256667777754156888888777765..566666666665 PP

>> LppC  LppC putative lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   2.6   1.2e-09   4.2e-06     219     420 ..      28     240 ..      12     360 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.2e-09
                 ---EEEEE--SSTTHHHHHHHHHHHHHHH.......TT--S-EEEEETTTS...-HHHHHHHHHHTT--EEE---SHHHHHHHHHSGG.GTTSEEEES- CS
        LppC 219 ltkvalLLPlsGklakvaetirdGFlaak....daetqsnaqvkvfDtaae...slediyaqakaagidlvVGPLlkqnvdkllaqeqlvqsidvLaLN 310
                   k++++LPlsG l   +++ ++G +  +      ++  ++++ v+D ++    +++++ + + ++ +d v+G     n  ++ + +    + ++ +  
  CTQ26647.1  28 EIKIGVVLPLSGALSGYGQPSQKGLDIIQaitpTLKNGDTIKLIVIDDKSDkveAANAMQRLVSSDKVDAVIGEVTSSNTLAMTKIADD-SKTPLVSST 125
                 569*********************9976665766677788999999*777622255566778999*************98888776666.455555555 PP

                 --TT---..BTTEEE----HHHHHHHHHHHHHHT..T-SSEEEEEESSHHHHHHHHHHHHHHHHHHSS-.-EEEEESSGGGHHHHHHHH-.TTTEEEEE CS
        LppC 311 ssdnsra..iaqlcyfgLspEdeaesaAsklwad..gvRnplvlvpqndlGrRvveAFnerwqqlagtd.aaielvdqpadlaqqlkdasrqdidavyi 404
                 ++++ ++   + +     s   +++  A+ +  d  +   ++v+ + nd+    ++AF +++ + +gt  + ++  +  +d + ql++ + +++d +y+
  CTQ26647.1 126 ATNDRVTrnHPYVSRVCFSDSFQGVVGANLASRDlkAKTAAIVFDSSNDYSVGLAKAFRTQFLKNGGTIpIEVQAPGGSKDFKAQLASVKAKNVDMIYM 224
                 55554441133444556666667777777777663245678999************************99****************************9 PP

                 ---HHHHHHHHHHHHT CS
        LppC 405 vanskelaeikptlan 420
                  +  +e a i+ + ++
  CTQ26647.1 225 PIYYTEGALIAVQSKQ 240
                 9888888888766555 PP

>> Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   5.5e-05       0.2      29     107 ..     102     185 ..      76     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.5e-05
                     EEE-SS-EEEEEE-TTT--EEEEECS-SCCCT.....S-SSSCHHHHHHHHHHHHHHHCHHCHTC-EE--TTSSS-CHHHHHHH CS
  Ribosomal_L18p  29 vfrsnrhiyaQviddvkgktlasastlekelk.....lkstknkeaakkvgeliAerakekgiekvvfDrggykYhGrvaalAd 107
                     v+ sn+  + ++ dd+k   + s+ t +   +      +   + +    vg+++A r ++++  ++vfD +     G  +a+ +
      CTQ26647.1 102 VTSSNTLAMTKIADDSKTPLVSSTATNDRVTRnhpyvSRVCFSDSFQGVVGANLASRDLKAKTAAIVFDSSNDYSVGLAKAFRT 185
                     77888888999999999999999999998888766422222333444579*******************998777788888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2642.90
//
Query:       CTQ26648.1  [L=258]
Description: Ethanolamine ammonia-lyase light chain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-88  296.2   0.0    1.5e-88  296.0   0.0    1.0  1  EutC      Ethanolamine ammonia-lyase light chain (EutC)


Domain annotation for each model (and alignments):
>> EutC  Ethanolamine ammonia-lyase light chain (EutC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.0   0.0   8.4e-93   1.5e-88       2     233 .]       5     239 ..       4     239 .. 0.99

  Alignments for each domain:
  == domain 1  score: 296.0 bits;  conditional E-value: 8.4e-93
                 HHHHHHHHH-SS--S---BTTB--HHHHHHHHHHHHHHHHHHH----HHHHHHT-.......EEEEBS--SHHHHTT-HHHHTSB-HHHHHHHHHHS-S CS
        EutC   2 daweklreltpariglgragsslptkellafqlahaaArdAvhseldeealaeeleelg...levksaakdreeyLrrPdlGrklseesleklkekaee 97 
                 daw+ lre+t+ari+lgr+g+slpt+e+l+f laha+ArdA+h+++ +++l + l++lg   l+v+saa+dr++yLrrPdlGr+l++es++ l+++  +
  CTQ26648.1   5 DAWNPLREFTDARIALGRSGASLPTREVLNFGLAHARARDAIHQPFASQQLVAPLAALGleaLTVHSAAPDRHTYLRRPDLGRQLADESRADLAASGVR 103
                 89*****************************************************99999999************************************ PP

                 S-SEEEEEE-TT-HHHHHTTHHHHHHHHHHHHHTTTS-B---EEEET--TTHHHHHHHHHT-SEEEEEEE----SS----EEEEEEES--TT--GGGSE CS
        EutC  98 eadvaivvaDGLsaeAveenaaelleallealkeaglsvapvvlveqgRValgdeigellgakvvvvliGERPGLssadslgvYltyapkvgltdaern 196
                  ad+ +v++DGLs+ Ave++a++l++all+ l++ g+ +apvvl++q+RValgd+ige+l+a++v +liGERPGLss+dslgvYlt++p++++ ++ern
  CTQ26648.1 104 PADLLLVIGDGLSSWAVERQAVPLIRALLPYLRTLGIGLAPVVLAHQSRVALGDDIGETLKARAVAILIGERPGLSSPDSLGVYLTWQPHRQRLESERN 202
                 *************************************************************************************************** PP

                 EEEEESTTSB-HHHHHHHHHHHHHHHHHHT--GGGS. CS
        EutC 197 ciSnirkeGlsyeeAaaklaellkealklklsGveLk 233
                 ciSnir+eGls ++Aa kla+ll++a+ ++l+Gv Lk
  CTQ26648.1 203 CISNIRPEGLSHDAAAFKLAWLLEQAFWRRLTGVGLK 239
                 ***********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2027.71
//
Query:       CTQ26649.1  [L=462]
Description: Ethanolamine ammonia-lyase heavy chain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.2e-221  733.6   0.0   8.4e-221  733.4   0.0    1.0  1  EutB      Ethanolamine ammonia lyase large subunit (EutB)


Domain annotation for each model (and alignments):
>> EutB  Ethanolamine ammonia lyase large subunit (EutB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  733.4   0.0  4.7e-225  8.4e-221       1     432 [.      11     443 ..      11     446 .. 0.99

  Alignments for each domain:
  == domain 1  score: 733.4 bits;  conditional E-value: 4.7e-225
        EutB   1 yefkdlkevlakaneeksGDelagvaAeseeervaAklvLadlklkdlleeplvpyeeDevtrlildsvdeaafakikdltvgelreflLseeaseeel 99 
                 ++f++lk+++aka++++sGD+lag+ A+s+eer+aAk++La+++l+d+l++pl+pye+Devtrlild++d++ fa++++ltvg++r++lL++++++++l
  CTQ26649.1  11 WRFDSLKTLMAKASPARSGDALAGIIATSAEERMAAKMALAEVPLTDILDNPLIPYEQDEVTRLILDTHDAQGFAALRHLTVGDFRDWLLDDATDTATL 109
                 68************************************************************************************************* PP

        EutB 100 kalakgltsemvaavsklmsnqdLiavakkievvtkfrttiGlkgtlsaRlqPnhptDdvegiaasvldgllygvGDaviGinPasdsvesvarllell 198
                 +++a+++t+em+aavsklm+nqdLi++a+k++vvt+fr+tiGl+g+ls+RlqPnhptDd +giaas+ldgllyg+GDaviGinPasds+  +a+l  +l
  CTQ26649.1 110 QRVARAITPEMAAAVSKLMRNQDLILAASKCQVVTRFRNTIGLPGHLSVRLQPNHPTDDLKGIAASMLDGLLYGAGDAVIGINPASDSLPVLAQLNVML 208
                 *************************************************************************************************** PP

        EutB 199 keviekfeiptqscvLaHvttqleaiekgapvdlvFqsiaGtekanksFgvslelleeaaeaalslkrg.vgenvlYfEtGqGselsadahhgvDqvtl 296
                 +++i++f+iptqsc+L+Hvt++l++ie+gapvdlvFqs+aGte+an+ Fg++l++l+ea+eaalsl+rg  g+nv+YfEtGqGs lsa+ahhgvDq+t+
  CTQ26649.1 209 DDIIQRFAIPTQSCILTHVTNTLQLIERGAPVDLVFQSVAGTEAANSGFGINLAMLQEAREAALSLRRGtLGSNVMYFETGQGSCLSANAHHGVDQQTC 307
                 *********************************************************************99**************************** PP

        EutB 297 EaRaYglarkfkpllvntvvGFiGPEylydgkqiiRagLEDhfmgkLlGlpmGvdvcytnHaeadqddldnlltllaaagvnylmgvpgadDvmLnYqs 395
                 EaRaY++ar+f+pllvntvvGFiGPEylydgkqiiRagLEDhf+gkL+Glp+G+dvcytnHaeadqdd+d+lltll+aag ++l+gvpgadD+mLnYqs
  CTQ26649.1 308 EARAYAVARHFEPLLVNTVVGFIGPEYLYDGKQIIRAGLEDHFCGKLMGLPIGCDVCYTNHAEADQDDMDTLLTLLCAAGLTFLIGVPGADDIMLNYQS 406
                 *************************************************************************************************** PP

        EutB 396 tsfhdalalrellglkpapefeawleklgildeegkl 432
                 tsfhdal++r+llglk+apef++wl+k++i+d +g l
  CTQ26649.1 407 TSFHDALYARRLLGLKHAPEFADWLAKMQIIDPHGAL 443
                 ********************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3415.57
//
Query:       CTQ26650.1  [L=459]
Description: Ethanolamine permease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-41  142.1  49.3    2.8e-41  141.7  49.3    1.1  1  AA_permease_2  Amino acid permease
      5e-30  104.5  42.5    6.7e-30  104.1  42.5    1.0  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7  49.3   3.1e-45   2.8e-41       2     401 ..      13     419 ..      12     438 .. 0.77

  Alignments for each domain:
  == domain 1  score: 141.7 bits;  conditional E-value: 3.1e-45
  AA_permease_2   2 sllsafalvigsvigsgifvkn.laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasil 96 
                    + +++ ++++g+vi+  +f  + +   +g+  +++v +av ++  a+++ + El++a+p+ gG + y+++afg+  +f++++++++ +v++ ++i+
     CTQ26650.1  13 GSFRLWGIAVGLVISGEYFGWSyGWSQAGTMGFMVVALAVAAMYCAFIFSFTELTTAIPHAGGPFAYAYRAFGPTGGFIAGFATLIEFVFAPPAIA 108
                    567888999****9998887766333355554444444444444599999****999******************************999777776 PP

  AA_permease_2  97 svaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl..stetdtffpn.gwpg 189
                     ++++yl n+ +p l++     +++a++ +++++++ni+g+ + a++  i+++l i+  l+++   g+++ +++++++    +++  +f++   pg
     CTQ26650.1 109 MAIGAYL-NVQFPALDP-----KWVACGAYVIFMTLNILGVGIAATFELIVTLLAIF-ELLVF--MGVVAPGFSWSHFTtnGWAGADSFSGlALPG 195
                    6666555.556699988.....599*******************************7.43333..4688887777763322223333444445556 PP

  AA_permease_2 190 vllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsn.lgsvaalffeavggk..vvaiivvili 280
                    ++++++ ++w f ++e+a+  +ee+k   +++p+a+  g+l+ +vl ++v++++ gv  +  ++n+++ l+   +++   vg++  +++++v+ l+
     CTQ26650.1 196 MFAAIPFAIWFFLAIEGASMAAEEAKDpqRTIPRALGGGILTLTVLAIGVMVFAGGVGDWRALSNINDpLP---QAMKTVVGNGsgWLHMLVW-LG 287
                    799*********************775559********************999999999999998777344...7777777743348888888.99 PP

  AA_permease_2 281 alsllgaintavigssrvlealardgvlPrffakvn.kfgspiraiiltaivslillllfl...lassaayn........fllsvsslgliisyll 364
                     ++l+ +  + ++g sr++++lar g+lP  +a+ n ++ +p  ai    +v  i + +f+   +      +        +++++s++g+i++y+ 
     CTQ26650.1 288 LFGLVASFHGIIMGYSRQIYSLARAGYLPAGLASLNrRTRTPHLAILAGGVVG-IAA-IFSdslI------TisgmpltaCIVTMSVFGAIVMYIT 375
                    9***********************************99***********9999.432.3433430......244555556**************** PP

  AA_permease_2 365 liigalilrkkrphlkrpgk.......ilvaiigalfllfllva 401
                     ++++++lr+ +p+l rp +       + +a+ +a+++l+++v+
     CTQ26650.1 376 SMAALFKLRRSEPKLIRPFRaplyplaPAFALGMAVLCLVAMVW 419
                    ***************99666455333233444444444444444 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1  42.5   7.4e-34   6.7e-30       6     436 ..      21     424 ..      17     451 .. 0.85

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 7.4e-34
  AA_permease   6 alggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasiliqf 103
                  a+g vi+ g ++g ++  sqaG +g +++ l + +++ +++ s+ e+ t++p++gg  +ya r  gp  Gf  G+ +l+ ++++ ++  +a++ +++ 
   CTQ26650.1  21 AVGLVIS-GEYFGWSYGWSQAGTMGFMVVALAVAAMYCAFIFSFTELTTAIPHAGGPFAYAYRAFGPTGGFIAGFATLIEFVFAPPAIAMAIGAYLNV 117
                  5556555.678999*************************************************************************99999999999 PP

  AA_permease 104 welvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivg.iillaggkpnkgagfrflgdngsifknnlppgfakeeegafkn 200
                     +++l  +wv ++  +v+++++n++gv   + +e+i++l++i  ++ f+ v  + ++++  +++g      ++ ++     ++       + a+ +
   CTQ26650.1 118 Q--FPALDPKWV-ACGAYVIFMTLNILGVGIAATFELIVTLLAIFELLVFMGVVaPGFSWSHFTTNG------WAGAD----SFS-------GLALPG 195
                  9..****95555.668******************************999998887888888888888......33333....233.......357888 PP

  AA_permease 201 fisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinavilt 298
                  +++++++++  f  ie   ++a+E+kdP+++iP+a    ++++t++ +++++++g + ++ +l+++nd +    p+   ++  + s++ + ++ + l 
   CTQ26650.1 196 MFAAIPFAIWFFLAIEGASMAAEEAKDPQRTIPRALGGGILTLTVLAIGVMVFAGGVGDWRALSNINDPL----PQAMKTVVGNGSGWLHMLVWLGLF 289
                  *******************************************************************777....677777777777888888888888 PP

  AA_permease 299 aalssansslysasRvlyslakdglaPkvlkkvskr.gvPlraillsmiisllalllaslnlaa.pivfnfllaisaliglivwlliilsylrfRkal 394
                   ++ s  ++++ +sR++ysla+ g++P+ l+ +++r + P+ ail+  +++ +a++ +sl ++     ++ ++++s + ++++++ +++++ ++R++ 
   CTQ26650.1 290 GLVASFHGIIMGYSRQIYSLARAGYLPAGLASLNRRtRTPHLAILAGGVVGIAAIFSDSLITISgMPLTACIVTMSVFGAIVMYITSMAALFKLRRS- 386
                  888999*********************666666655288****************999998883123566677777777777777777777777777. PP

  AA_permease 395 kyqgrsieelgfkaallplgvilvlaaliiillilalyaylt 436
                   + +      +f+a+l+pl + ++l + ++ l+++ +y +l 
   CTQ26650.1 387 -EPKL---IRPFRAPLYPLAPAFALGMAVLCLVAMVWYNLLL 424
                  .3333...359**************************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3518.71
//
Query:       CTQ26651.1  [L=469]
Description: S-methylmethionine transporter; CP4-6 prophage [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.3e-114  383.5  40.9   1.5e-114  383.3  40.9    1.0  1  AA_permease    Amino acid permease
    6.5e-45  153.7  47.2    7.5e-45  153.5  47.2    1.0  1  AA_permease_2  Amino acid permease
      0.004   16.8   0.9      0.004   16.8   0.9    4.5  6  DUF4131        Domain of unknown function (DUF4131)
  ------ inclusion threshold ------
       0.01   15.6   4.9       0.01   15.6   4.9    2.5  2  Trp_oprn_chp   Tryptophan-associated transmembrane protein (T


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.3  40.9  3.2e-118  1.5e-114       1     474 [.      20     460 ..      20     465 .. 0.97

  Alignments for each domain:
  == domain 1  score: 383.3 bits;  conditional E-value: 3.2e-118
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ +lggviGtglf+ +g+++s+ G +g+llayl++ +v++lvm++lge+++++p++g+f++ya+r+lgp+ G++++++y+++w ++l+  +taa+
   CTQ26651.1  20 HLIMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVWLVMQCLGELSVAMPETGAFHVYAARYLGPATGYTVAWLYWLTWTVALGSSFTAAG 117
                  99************************************************************************************************ PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivg......iillaggkpnkgagfrflgdngsifknnlppgf 190
                   ++q+w  ++++p  w++ +vf +v++++n+++ ++++e ef+++l+k+i+i+afii+g      ii++ +g p++g  +r+++++g      +p+g 
   CTQ26651.1 118 FCMQYW--FPQVP-VWIWCVVFCAVIFGLNIISTRFFAEGEFWFSLVKVITIVAFIILGgaaifgIIPMQDGSPAPG--LRNITAEGW-----FPHG- 204
                  ******..*****.*********************************************998887777777777777..999999888.....****. PP

  AA_permease 191 akeeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvl 288
                          + +++ +v+v+faf+G+el++i+agE+++P k iP ai+ ++ r++if+++ ++++ +l+p +  g+ +      spfv+++++ g++++
   CTQ26651.1 205 -------GLPILMTMVAVNFAFSGTELIGIAAGETENPHKVIPVAIRTTIARLIIFFIGTVFVLAALIPMQQAGVEK------SPFVLVFEKVGIPYA 289
                  .......89*****************************************************************999......9************** PP

  AA_permease 289 aplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliils 386
                  a+ +n+vilta+ls+ans+ly++ R+l+sl++++++P++++kv+krgvP+ a+ +sm+ ++lal+ + ++++  +vf  l+ais+++ ++vwl+i++s
   CTQ26651.1 290 ADMFNFVILTAILSAANSGLYASGRMLWSLSNEKTLPACFAKVNKRGVPVTALSVSMLGGVLALFSSVVAPD--TVFVALSAISGFAVVAVWLSICAS 385
                  ************************************************************************..************************ PP

  AA_permease 387 ylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                  +  fR+    qg+++++l+++a+ +p  ++l++++++  ++ la+ ++++             +a+ ++++ + +++ +++l  ++  
   CTQ26651.1 386 HFMFRRRHLQQGKALSDLQYRAPWYPVVPVLGFVLCLVACVGLAFDPSQR-------------IALWCGIPFVALCYGAWYLTRSRNM 460
                  ************************************************99.............9999999999988888877766655 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.5  47.2   1.7e-48   7.5e-45       3     419 ..      18     446 ..      16     452 .. 0.83

  Alignments for each domain:
  == domain 1  score: 153.5 bits;  conditional E-value: 1.7e-48
  AA_permease_2   3 llsafalvigsvigsgifvkn..laasggpa.lilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasi 95 
                    ++ +++l++g vig+g f+ +   + ++g+a ++l ++i++l++ + v+ ++ Els a+p  g   vy+++  g+  ++++aw++w+ + ++l s+
     CTQ26651.1  18 TRHLIMLSLGGVIGTGLFFNTgyIISTTGAAgTLLAYLIGALVV-WLVMQCLGELSVAMPETGAFHVYAARYLGPATGYTVAWLYWLTWTVALGSS 112
                    57899**************9999777788886777778888887.899999*****99***********************************999 PP

  AA_permease_2  96 lsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdg.....ggfssl......stetd 180
                    +++a+  +++ ++p++  +  ++    +++ ++++ +ni++++  a   ++  ++k+ ++++ +iilg +++ g     +g   +           
     CTQ26651.1 113 FTAAGFCMQY-WFPQVPVW--IW---CVVFCAVIFGLNIISTRFFAEGEFWFSLVKV-ITIVAFIILGGAAIFGiipmqDG---SpapglrNI--- 195
                    9988888888.66887433..33...3344566777888888888888899999**9.56666666665554332423233...244466533... PP

  AA_permease_2 181 t...ffpngwpgvllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkv 271
                    t   +fp+g   +l+++ +v ++f+G e +   + e  +++k +p+ai   ++  +++++++ +++++ +p+ +  + + +  ++ l+fe+vg + 
     CTQ26651.1 196 TaegWFPHGGLPILMTMVAVNFAFSGTELIGIAAGEteNPHKVIPVAIRTTIARLIIFFIGTVFVLAALIPMQQAGV-EKS--PFVLVFEKVGIPY 288
                    133499999999************************555559********************************986.443..699********** PP

  AA_permease_2 272 vaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisylllii 367
                    +a +++++i  ++l a+n+ +++s r+l++l+++++lP  fakvnk+g p+ a+ ++++  ++ l+ + +a+++ + +l+++s ++++ ++l + +
     CTQ26651.1 289 AADMFNFVILTAILSAANSGLYASGRMLWSLSNEKTLPACFAKVNKRGVPVTALSVSMLGGVLALFSSVVAPDTVFVALSAISGFAVVAVWLSICA 384
                    ************************************************************988777777888************************ PP

  AA_permease_2 368 galilrkkrphlkr.........pgkilvaiigalfllfll.valffppkgpatqssliyti 419
                    + ++ r++  ++++         p++++v  +g++++l+++  ++f p++++a + ++ +  
     CTQ26651.1 385 SHFMFRRRHLQQGKalsdlqyraPWYPVVPVLGFVLCLVACvGLAFDPSQRIALWCGIPFVA 446
                    ********999988899999999555556666666666665166666777888887777665 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   4.0      0.16   7.1e+02      26      54 ..      64     127 ..      20     129 .. 0.65
   2 ?   -0.2   5.7      0.16   7.1e+02       2      45 ..     102     143 ..      98     155 .. 0.66
   3 ?   -1.0   4.1      0.26   1.2e+03       2      47 ..     126     175 ..     124     189 .. 0.61
   4 ?   -1.9   0.1       0.5   2.3e+03      31      43 ..     250     262 ..     200     281 .. 0.66
   5 ?   -0.4   0.8      0.17   7.7e+02       6      49 ..     338     380 ..     333     397 .. 0.57
   6 !   16.8   0.9   8.8e-07     0.004       4      63 ..     408     467 ..     405     469 .] 0.81

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.16
     DUF4131  26 r...................................rprrrvllllllllllallgfalrapqp 54 
                                                      ++ ++ ++l+  + +a+++++++ pq 
  CTQ26651.1  64 VmqclgelsvampetgafhvyaarylgpatgytvawLYWLTWTVALGSSFTAAGFCMQYWFPQV 127
                 2334455557777777777555555555555555556777777777778888888888777765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.16
     DUF4131   2 glplalvllalllllllllllllrrrprrrvllllllllllall 45 
                 +l++ + l  ++ ++ ++  +++   + + +++++ +++++++l
  CTQ26651.1 102 WLTWTVALGSSFTAAGFCMQYWF--PQVPVWIWCVVFCAVIFGL 143
                 67777777777777777777775..4555555555555555544 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.26
     DUF4131   2 glplalvllalllllllllllllrr......rprrrvllllllllllallgf 47 
                 + p+++++++++++++ l ++  r+              +++++++++l+g+
  CTQ26651.1 126 QVPVWIWCVVFCAVIFGLNIISTRFfaegefW--FSLVKVITIVAFIILGGA 175
                 67889999988888888888877666555321..222223344444444444 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.5
     DUF4131  31 rvlllllllllla 43 
                  ++++++ +++la
  CTQ26651.1 250 LIIFFIGTVFVLA 262
                 2233333333332 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.17
     DUF4131   6 alvllalllllllllllllrrrprrrvllllllllllallgfal 49 
                 ++ +l + +l  +l+l+ +      +v+++l+++  +a++ ++l
  CTQ26651.1 338 PVTALSVSMLGGVLALFSSV-VAPDTVFVALSAISGFAVVAVWL 380
                 55555555555666666554.44444555555555555544444 PP

  == domain 6  score: 16.8 bits;  conditional E-value: 8.8e-07
     DUF4131   4 plalvllalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqll 63 
                 p++ v+ +l+++l+l++++ l + p++r++l +++ ++++++g+++ ++++n ++ +q +
  CTQ26651.1 408 PWYPVVPVLGFVLCLVACVGLAFDPSQRIALWCGIPFVALCYGAWYLTRSRNMTQEPQHV 467
                 566666666666666666666669******************************999876 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.9      0.28   1.3e+03      73      89 ..      52      68 ..      41     121 .. 0.67
   2 ?   15.6   4.9   2.3e-06      0.01      45     141 ..     339     433 ..     300     438 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.28
  Trp_oprn_chp 73 llalagagaavaalsll 89
                  l+ l+ga++++ +++ l
    CTQ26651.1 52 LAYLIGALVVWLVMQCL 68
                  34455555555555554 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.3e-06
  Trp_oprn_chp  45 ltalAlvllAaavAvlavrglgrrvvgvllalagagaavaalslltdpadaaraaaaaatgvasaaaaveltawpvlalaggvllllagvllllrar 141
                   +tal++ +l +++A++    +  +v+ +l a++g+++++  ls+ +++    r + ++  g a ++ +++++  pv+ ++g vl+l+a+v l+  ++
    CTQ26651.1 339 VTALSVSMLGGVLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLQQ--GKALSDLQYRAPWYPVVPVLGFVLCLVACVGLAFDPS 433
                   69***********************************999999999988777777766..55567777788889*****************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       820  (0.045736); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 3229.95
//
Query:       CTQ26652.1  [L=310]
Description: S-methylmethionine:homocysteine methyltransferase; CP4-6 prophage [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-81  273.4   0.0    3.1e-81  273.1   0.0    1.0  1  S-methyl_trans  Homocysteine S-methyltransferase


Domain annotation for each model (and alignments):
>> S-methyl_trans  Homocysteine S-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.1   0.0   1.7e-85   3.1e-81       1     266 [.      17     308 ..      17     309 .. 0.91

  Alignments for each domain:
  == domain 1  score: 273.1 bits;  conditional E-value: 1.7e-85
                     EEB---SHHHHHHT.----STTHHCCHH.H-HHHHHHHHHHHHHHT-SEEE-TTTT--GG.....T--HHHHH.HHHHHHHHHHHHHHHHH.... CS
  S-methyl_trans   1 lilDGgmgteLerr.adlseelwsaell.trpelikeihrdyleaGadiieTnTyqaskik....gleeeeeveelnraavelareaadeaaa.. 87 
                     ++lDG+m+teLe+r +dl+++lwsa++l  +p+li+++h dy++aGa+++ T++yqa+++     gl+ e++ ++l+ ++velar+a++++ a  
      CTQ26652.1  17 VLLDGAMATELEARgCDLADSLWSAKVLlENPQLIRDVHLDYFRAGAQVAITASYQATPAGfaarGLD-EAQSRALIGKSVELARKAREAYLAen 110
                     58**************************77****************************5444444785.788889****************8888 PP

                     ......HEEEEE--HHHHCTS.....-.--.--HHHHHHHHHHHHHHHHHCT-SEEEEEEE--HHHHHHHHHHHT.T..--EEEEE-ECCT.TET CS
  S-methyl_trans  88 ....plfvagsvGpygatlsd.....g.ydllsfeelveahreqiralleagvDlllietipdlleakaavellaae..lpvwisftikdestlr 170
                         +l vagsvGpyga+l+d     g y+  s +e++++hr++++all+ag+Dll++et+p+++e++a++ ll+++    +w sft++d+++l+
      CTQ26652.1 111 pqagTLLVAGSVGPYGAFLADgseyrGdYQ-RSAAEFQAFHRPRVEALLDAGADLLACETLPSFAEIQALAALLQEYprARAWYSFTLRDAEHLS 204
                     7777666**************754444444.9**************************************99**9965566********9966** PP

                     TS-BHHH.HHHHHCT-TEEEEEEES--GGGHHHHHHHHHTT--S-.EEEE---.S-----------....-..........HHHTTEEEE---TT CS
  S-methyl_trans 171 sGetleeavaalaaatqplavgvNCakpeelepllkelksetalpavivypnsagevydltpeewaesaee..........wleaganiiGGCCg 255
                     +G++l+e++aala++ q +avg+NC   e+  ++l++l+s talp ++vypns ge+yd+ +++w+++ e           wl+aga++iGGCC+
      CTQ26652.1 205 DGTPLREVMAALADNPQVVAVGINCIALENTPAALAHLHSLTALP-LVVYPNS-GEHYDAVSKTWHHHGEAcasladylpqWLAAGAKLIGGCCR 297
                     **************9788********************9999999.99****8.************98776************************ PP

                     --HHHHHHHHH CS
  S-methyl_trans 256 ttpehIraiae 266
                     ttp++I+a+ +
      CTQ26652.1 298 TTPKDIAALNA 308
                     ********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2465.64
//
Query:       CTQ26653.1  [L=320]
Description: taurine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-25   87.6   1.5    1.4e-24   87.0   1.5    1.3  1  OpuAC           Substrate binding domain of ABC-type glycine 
    7.4e-21   75.0   2.7    1.6e-20   73.9   2.8    1.5  1  NMT1_2          NMT1-like family
    5.7e-19   68.9   0.0    8.1e-19   68.4   0.0    1.3  1  NMT1            NMT1/THI5 like
    2.5e-08   33.8   0.2    3.6e-08   33.3   0.2    1.3  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
    1.5e-05   24.6   0.1      0.023   14.1   0.0    3.0  3  SBP_bac_3       Bacterial extracellular solute-binding protei


Domain annotation for each model (and alignments):
>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   1.5     4e-28   1.4e-24       2     231 ..      24     232 ..      23     251 .. 0.85

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 4e-28
                 EEEEEEESSHHHHHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHHHHHHHHHHHHHHEEEEEE.EESEEECEEEEEEHHHHHH CS
       OpuAC   2 tivigsknwteqevlaeilkqllekkGykveltnlgstavlfaalasGdiDvypeewtgtayeaykkaveekkglevlg.plgagnteglavpkyvaek 99 
                 ++++++++ +e   +a+ + ++ +  G++v++ +++s+a+++ alasGd+++   + ++ a +a ++ v+    +ev   +++ gn e+l+v+k     
  CTQ26653.1  24 NVTVAYQTSAEPAKVAQADNTFAKTSGATVDWRKFDSGASVVRALASGDVQIGNIGSSPLAVAASQQ-VP----IEVFLlASKLGNSEALVVKKS---- 113
                 69****************************************************9999998755555.66....33333389**********966.... PP

                 HTTTBHHHHCTHHGGTEEEEEHHCCHSTTSHHCCHHHHHHHHHHT-T..TCEEEGSCEEEEHHHHHHHHHTTCSSEEEEETTSTHHHHTTEEE-B-T.. CS
       OpuAC 100 ygiksisDLkkpaedlelgakgeflgrpdgwgcekvtegllkaYgld..kvelvegseaamdaelyaaykrgepvvvyawtPdwaikkydlvvLedp.. 194
                   i++ +DL            g+ ++ p  ++++++   +lk++g++  +v+ +    + + +++ aa++rg+++ +y+w+P     + + +vL+d   
  CTQ26653.1 114 --ITKPEDL-----------IGKRIAVPFISTTHYSLLSALKHWGIKpgQVQII----NLQPPAIIAAWQRGDIDGAYVWAPAVNELEKEGKVLTDSsq 195
                 ..699****...........79************************32334443....44455********************************9944 PP

                 TSTS-SSEEEEEEEEHHHHHHSCTHHHHHHHHC--HH CS
       OpuAC 195 kglfppaynvvpvvrkefaekaPevaafLeklsldte 231
                  g +++++  v+vvrk+fae++Pe+ ++++k ++d +
  CTQ26653.1 196 VGEWGAPTLDVWVVRKDFAEQHPEIVKAFAKSAIDAQ 232
                 5568888*****************9999999777654 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   2.8   4.5e-24   1.6e-20       6     238 ..      21     235 ..      16     253 .. 0.87

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 4.5e-24
      NMT1_2   6 eqlklGfialtdaaplvvakekglfake.GltvelekqaswaelrdkllagelDaahv.ltpapllidlGiggakadmkvlaslnlnGqaitlsnklkd 102
                 +++++ + + t a+p  va+ +++fak  G tv+++k+ s+a+++++l++g++ ++ + + p+++++++ +   + ++  las   n  a+++++    
  CTQ26653.1  21 QAVNVTVAYQTSAEPAKVAQADNTFAKTsGATVDWRKFDSGASVVRALASGDVQIGNIgSSPLAVAASQQV---PIEVFLLASKLGNSEALVVKK---- 112
                 6788899999******8888888888766**************************************9999...788888888888889999974.... PP

      NMT1_2 103 kkvsdakalkdlvakkkaskplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvtaltsqel 201
                     +  + +dl+       + +iav+f  st+ + l  +L+  G++p  +v+++ ++pp+++a+ ++g+idg+ v +P  + +++eg    +++s ++
  CTQ26653.1 113 ----SITKPEDLI-------GKRIAVPFI-STTHYSLLSALKHWGIKP-GQVQIINLQPPAIIAAWQRGDIDGAYVWAPAVNELEKEGK--VLTDSSQV 196
                 ....566677774.......557888775.6666888899********.9*****************************8777776655..89999999 PP

      NMT1_2 202 ..wkdhPekvlgvredfveknpntaralvkalleAtkwl 238
                   w      v +vr+df+e++p+ ++a+ k  ++A++  
  CTQ26653.1 197 geWGAPTLDVWVVRKDFAEQHPEIVKAFAKSAIDAQQPY 235
                 9999977889*************************9854 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   2.3e-22   8.1e-19      17     214 ..      47     240 ..      30     242 .. 0.88

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 2.3e-22
                 HHTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-.S--EEEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHH CS
        NMT1  17 keeGldVeivepadpsdatelvasgkadfgvsyqesllaarakglpvvsvaallq.eplsglivlkdsgikspkDLkGkrigyvgspfekallkallak 114
                 k  G  V+  +    +++++++asg++++g   +  l++a ++++p+  +    +  + ++l+v+k+  i++p+DL Gkri+++  + + + l + l++
  CTQ26653.1  47 KTSGATVDWRKFDSGASVVRALASGDVQIGNIGSSPLAVAASQQVPIEVFLLASKlGNSEALVVKKS--ITKPEDLIGKRIAVPFISTTHYSLLSALKH 143
                 4567788888888889*******************************98765554156677777777..****************************** PP

                 TT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT-.-EEEE-GGGTT-----SEEEEEEHHHHHH-HHHHHHHHHHHHHHHHHHHHS CS
        NMT1 115 dggdpsdvtlvnvggtslakalltgkvDaaiggyenwegvelesegk.elrifaladlgvpdyyslvlitnekllkenpelvkkFlrAlkkGyeyalah 212
                  g++p +v+++n +    ++a  +g +D a+  +++  ++ele+egk  ++  ++ ++g p++  +v ++ +++++++pe+vk+F +    + +  +a+
  CTQ26653.1 144 WGIKPGQVQIINLQPPAIIAAWQRGDIDGAY--VWAPAVNELEKEGKvLTDSSQVGEWGAPTL--DVWVVRKDFAEQHPEIVKAFAKSAIDAQQPYIAN 238
                 ****************************998..555558888899996778899*****9877..6999****************************** PP

                 HH CS
        NMT1 213 Pe 214
                 Pe
  CTQ26653.1 239 PE 240
                 *8 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.2     1e-11   3.6e-08      23     214 ..      45     224 ..      25     262 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1e-11
                     HHHHHSSEEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS.-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE--TT-T CS
  Phosphonate-bd  23 LseelGvevelvvatdyaavvealragqvDiaflgplayvqardqa.gveplatrvrsdGsasyrsviivradsdiqsledLkgktiafvspsSt 116
                     + +  G +v+ + +++ a vv+al++g v+i+ +g+++ ++a+ q+  +e+++  ++     + + +++v+++  i++ edL gk+ia++  s t
      CTQ26653.1  45 FAKTSGATVDWRKFDSGASVVRALASGDVQIGNIGSSPLAVAASQQvPIEVFLLASK----LGNSEALVVKKS--ITKPEDLIGKRIAVPFISTT 133
                     5667799999999************************999987665499*******8....666669999995..**************987766 PP

                     TTTHHHHHHTCCCCT--HHHHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH-HHHHTTEEEEEEEEEEE--EEEEETTS-HHHHHHHH CS
  Phosphonate-bd 117 sGylvpaalLvkeagldpeddfsevfsgshdaavlavlsgdadaaavsadaledlvaegpedkdelrviassppipndpvvvrkelseelkekiq 211
                        +  +  L k  g++p++  +       +a ++a  +gd+d a v+a a+++l++eg++  d+ +v +  +p   d++vvrk+  e+   +i 
      CTQ26653.1 134 H--YSLLSAL-KHWGIKPGQV-QI-INLQPPAIIAAWQRGDIDGAYVWAPAVNELEKEGKVLTDSSQVGEWGAPT-LDVWVVRKDFAEQHP-EIV 221
                     6..5555569.9******964.44.444689999999**********************9999888886555554.589999998776644.444 PP

                     HHH CS
  Phosphonate-bd 212 dal 214
                     +a+
      CTQ26653.1 222 KAF 224
                     444 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.3    0.0035        13     131     177 ..      42      98 ..       7     112 .. 0.62
   2 !   14.1   0.0   6.3e-06     0.023      87     174 ..     106     191 ..     101     226 .. 0.77
   3 ?    2.4   0.0     0.025        89      75     130 ..     228     281 ..     223     311 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0035
                 C.........TSEEEEESSHHHHHHHHHTTSSSEE.EEEHHHHHHHHHHCCGCCEEE CS
                 x.........xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 131 k.........gaeivefdtleealqaLkngrvdav.vadspvlaylvkknpdkkvvl 177
                 +         +++ + fd+ +++++aL++g v+   +++sp +  + ++ p + + l
  CTQ26653.1  42 DntfaktsgaTVDWRKFDSGASVVRALASGDVQIGnIGSSPLAVAASQQVPIEVFLL 98 
                 1233445555777899****************9763566666666666666555555 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 6.3e-06
                 EEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC....TSEEEEESSHHHH.HHHHHTTSSSEEEEEHHHHHHHHHHCCGCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  87 qvllvrkkdaskissiksladLkgkkvgvqagstaeellkeelkk....gaeivefdtleea.lqaLkngrvdavvadspvlaylvkknpdkk 174
                 ++l+v+ k      si++++dL gk+++v   st++  l ++lk+      +++  + ++ a ++a + g +d + +  p++++l k+ + ++
  CTQ26653.1 106 EALVVK-K------SITKPEDLIGKRIAVPFISTTHYSLLSALKHwgikPGQVQIINLQPPAiIAAWQRGDIDGAYVWAPAVNELEKEGKVLT 191
                 667777.4......499999***********98877667666777877744555555555554999*********999999999888776655 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.025
                 TEEEESESEEEEEEEEEEETTSHGTCCHSSCGCGTTS.EEEEETTSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  75 kvdFsqpyfsagqvllvrkkdaskissiksladLkgk.kvgvqagstaeellkeelk 130
                  +d  qpy  ++++ l +    ++is+++ l+  ++    g ++g t+ ++++++++
  CTQ26653.1 228 AIDAQQPYIANPEAWLKQ-P--DNISKLARLSGVSEAdVPGLVKGNTYLTAAEQAQA 281
                 678899******999976.3..35666664444444235789999999977777443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2525.68
//
Query:       CTQ26654.1  [L=255]
Description: taurine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-33  114.2   0.0    8.5e-33  113.8   0.0    1.2  1  ABC_tran      ABC transporter
    1.9e-06   27.9   0.0      0.039   13.8   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    2.6e-05   24.7   0.3    4.6e-05   23.9   0.3    1.4  1  AAA_16        AAA ATPase domain
    2.9e-05   24.4   0.0     0.0075   16.5   0.0    2.3  2  AAA_28        AAA domain
    0.00022   21.2   0.0    0.00042   20.2   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
    0.00023   21.5   0.3     0.0011   19.3   0.3    1.9  1  AAA_22        AAA domain
    0.00075   19.0   0.1      0.095   12.1   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
     0.0013   18.4   0.4      0.015   15.0   0.4    2.1  1  AAA_30        AAA domain
     0.0014   18.6   0.0      0.014   15.3   0.0    2.4  3  ATPase_2      ATPase domain predominantly from Archaea
     0.0024   18.3   0.0      0.015   15.7   0.0    2.1  1  AAA           ATPase family associated with various cellular 
     0.0041   17.1   0.0     0.0079   16.1   0.0    1.4  1  Rad17         Rad17 P-loop domain
      0.009   15.1   0.0      0.013   14.5   0.0    1.2  1  T2SSE         Type II/IV secretion system protein
  ------ inclusion threshold ------
       0.01   16.4   0.0      0.018   15.6   0.0    1.3  1  AAA_23        AAA domain
      0.012   15.5   0.6      0.054   13.4   0.1    2.0  2  NACHT         NACHT domain
      0.013   15.7   0.4      0.087   13.1   0.4    2.1  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
      0.066   13.4   0.2       0.26   11.4   0.2    2.1  1  AAA_33        AAA domain
      0.078   12.5   0.4        0.2   11.2   0.0    1.8  2  AAA_25        AAA domain
      0.083   12.6   0.0       0.18   11.6   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
      0.099   12.7   0.0       0.22   11.5   0.0    1.6  1  AAA_14        AAA domain
       0.12   11.1   0.1        2.4    6.8   0.0    2.0  2  ABC_ATPase    Predicted ATPase of the ABC class
       0.14   11.5   0.0       0.27   10.6   0.0    1.5  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.15   12.1   0.2       0.35   10.9   0.1    1.6  2  AAA_5         AAA domain (dynein-related subfamily)
       0.25   11.7   0.0       0.43   11.0   0.0    1.3  1  RNA_helicase  RNA helicase
       0.35   10.5   0.5          1    9.0   0.0    1.8  2  AAA_24        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   1.1e-35   8.5e-33       1     136 [.      17     156 ..      17     157 .. 0.95

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 1.1e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 l +++l+l+ ge+++++G++G+GK+tLl+l+ag +  + G+i+l+g+ +         +e gv++q++ l p  +v++n             ++++ ++
  CTQ26654.1  17 LADINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLEGQRVAG-----PGAERGVVFQNEGLLPWRNVQDNvalglqlagvdkaQRRQAAA 110
                 5799*****************************************999998.....9*******************************9975555669* PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++l+k+gl++ +++ +     +LSgGq+qrv +aral+ +p+llllDEp+
  CTQ26654.1 111 QMLKKVGLEGAEKRFI----WQLSGGQRQRVGIARALAANPQLLLLDEPF 156
                 ****************....*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00014      0.11       2      22 ..      30      50 ..      29      84 .. 0.81
   2 !   13.8   0.0   5.2e-05     0.039     234     298 ..     126     188 ..      98     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                 v+ Gp g+GK++LL ++ ++
  CTQ26654.1 30 LVVLGPSGCGKTTLLNLIAGF 50
                699***************877 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 5.2e-05
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHS 298
                 +++lS G+++  +++ al++ +    lll+DEp   L+    +   +ll k+ +++g Qv+l TH+
  CTQ26654.1 126 IWQLSGGQRQRVGIARALAANP---QLLLLDEPFGALDAFTREQMQTLLlKLWHETGKQVLLITHD 188
                 6899999999999999999888...99************5555555555466666999*******8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.3   6.2e-08   4.6e-05      23     127 ..      26     143 ..      12     202 .. 0.58

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 6.2e-08
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdg.giflrgkcdql...esaipy.....salaqalareellrqlldeaesaeleawrekleealaavpela 112
                 ++el+++ G+sG+GK++l++ ++  +  ++  i+l+g+ +     e+++ +     +++ ++ ++  l  ql+  +++ ++++++++ ++ ++    l+
  CTQ26654.1  26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHgSITLEGQRVAGpgaERGVVFqneglLPWRNVQDNVALGLQLAGVDKA-QRRQAAAQMLKKVG----LE 119
                 3489*******************9999995466677777766555555444555556788888775555555555444.66666666666666....34 PP

      AAA_16 113 gaea.........srllellkrll 127
                 gae+         +r +  ++r+l
  CTQ26654.1 120 GAEKrfiwqlsggQRQRVGIARAL 143
                 444444433333333333333333 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     1e-05    0.0075       3      70 ..      31     108 ..      29     117 .. 0.68
   2 ?    5.6   0.0     0.023        17     133     162 ..     163     191 ..     159     192 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1e-05
      AAA_28   3 vitGgestGKTtlleaLa.....argypvv..pEaareileekl.akgedalpwv..edllafaervleeqleeeaaa 70 
                 v++G++++GKTtll+ +a     ++g  ++  +++a    e +  +++e+ lpw   +d +a+  ++    +++ ++a
  CTQ26654.1  31 VVLGPSGCGKTTLLNLIAgfvpyQHGSITLegQRVAGPGAERGVvFQNEGLLPWRnvQDNVALGLQLAGVDKAQRRQA 108
                 89****************999988866666666777666666666777777787655566666655444444333333 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.023
      AAA_28 133 ereaiderlrealrelgipviivpsgdvee 162
                  re+++++l+++++e g +v+ + + d+ee
  CTQ26654.1 163 TREQMQTLLLKLWHETGKQVLLI-THDIEE 191
                 599********************.999997 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.7e-07   0.00042      89     128 ..      16      56 ..       2      64 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.7e-07
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelktg 128
                  +l++++  l++ ++ v++G+SG GK+tL+n +++    + g
   CTQ26654.1  16 ALADINLTLESgELLVVLGPSGCGKTTLLNLIAGFVPYQHG 56 
                  5677888888879******************9986655555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3   1.4e-06    0.0011       4     131 ..      26     187 ..      23     193 .. 0.53

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.4e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee............erpevvfvtlpsst..sskdllrellralglelka.................. 70 
                 +  +lvv G+sG+GKTtll+ ++   + +                 +++    v  ++++   ++++  +++  l+l + +                  
  CTQ26654.1  26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHG--SitlegqrvagpgAER---GVVFQNEGllPWRNVQDNVALGLQLAGVDkaqrrqaaaqmlkkvgle 119
                 56789****************9999864333..2458677776655333...33333333334666666666666666666444333333333222222 PP

      AAA_22  71 ........erlsseellealeqalrarav.................ielliiDEaqh.lr..seealeeL.rsllnlsrkgvqliLvGtp 131
                         +                                     ++ll++DE    l+  + e++++L  +l+   ++g q+ L +t+
  CTQ26654.1 120 gaekrfiwQ-------------------LsggqrqrvgiaralaanPQLLLLDEPFGaLDafTREQMQTLlLKLWH--ETGKQV-LLITH 187
                 221333322...................033333334444444555668888884333544456666666355555..555555.44444 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0      0.02        15      26      44 ..      29      47 ..      18      58 .. 0.84
   2 !   12.1   0.0   0.00013     0.095     119     199 ..     105     189 ..      83     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.02
                EEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAi 44
                + +++Gp G+GK+ ll+ i
  CTQ26654.1 29 LLVVLGPSGCGKTTLLNLI 47
                56899********998766 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00013
                 -HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSH CS
                 xxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
       SMC_N 119 tkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislre 199
                 +++  +++l+++g++        +LSgG+++ v +a  +A +   p  l llDe   aLD+  ++++ +ll +  ++   Q++ i+++ 
  CTQ26654.1 105 RRQAAAQMLKKVGLEGAekrfiwQLSGGQRQRVGIARALAAN---P-QLLLLDEPFGALDAFTREQMQTLLLKLWHEtgKQVLLITHDI 189
                 556677777777777667777779***********9998854...4.4899***************99998765443349******974 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.4     2e-05     0.015      13     100 ..      23     159 ..      17     189 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2e-05
      AAA_30  13 lltsgdrvavltGpAGtGKttalkalreaweaa.g......................................grvigl..AptgkaAkvLaeelgiea 70 
                 +l+sg+ + v+ Gp G GKtt+l+ ++  +  + g                                       +++g+  A   +aA+++ +++g+e+
  CTQ26654.1  23 TLESGE-LLVVLGPSGCGKTTLLNLIAGFVPYQhGsitlegqrvagpgaergvvfqnegllpwrnvqdnvalgLQLAGVdkAQRRQAAAQMLKKVGLEG 120
                 566775.99*****************9998888557777776666666666666666666666666666665533333333555555555555666554 PP

      AAA_30  71 stiakllkrlk.........grarlepg.tllivDE.agmv 100
                 +    ++ +l          +r +l+++ +ll+ DE  g +
  CTQ26654.1 121 AEKR-FIWQLSggqrqrvgiAR-ALAANpQLLLLDEpFGAL 159
                 4422.33222246667776543.333334777777743444 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-05     0.014      11      40 ..      20      47 ..      14      50 .. 0.79
   2 ?   -1.4   0.0       2.4   1.8e+03     200     226 ..     112     133 ..      97     137 .. 0.70
   3 ?   -0.8   0.0       1.6   1.2e+03     105     131 ..     167     193 ..     152     203 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-05
    ATPase_2 11 leeilerepneiyfiYGpegsGKtaLlkei 40
                ++  le+   e +++ Gp g+GKt+Ll+ i
  CTQ26654.1 20 INLTLES--GELLVVLGPSGCGKTTLLNLI 47
                5555555..8899**************866 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.4
    ATPase_2 200 flkegfkeleelskedfeeiyryvGGk 226
                 +lk+      +l+  ++  i+++ GG+
  CTQ26654.1 112 MLKK-----VGLEGAEKRFIWQLSGGQ 133
                 3333.....245889999999999996 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.6
    ATPase_2 105 aielllekikkkgkkiiiiiDelqkli 131
                   +lll+   ++gk++ +i  ++ ++i
  CTQ26654.1 167 MQTLLLKLWHETGKQVLLITHDIEEAI 193
                 445566666788888888888888877 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     2e-05     0.015       2      66 ..      31     154 ..      30     197 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2e-05
                 EEESSTTSSHHHHHHHHHHHH..THEEEEEETTTCSSS..........................................................STT CS
         AAA   2 llyGppGtGKTllakavakel..gvefleisgsellsk..........................................................yvg 40 
                 ++ Gp G+GKT+l + +a  +  +   ++++g ++                                                             ++ 
  CTQ26654.1  31 VVLGPSGCGKTTLLNLIAGFVpyQHGSITLEGQRVAGPgaergvvfqnegllpwrnvqdnvalglqlagvdkaqrrqaaaqmlkkvglegaekrfiWQL 129
                 689***************986332223444444444333444444444455545555555555555555555555555555555566666666633333 PP

                 HHHHHHHHHHHHHHHTS.TSEEEEEET CS
         AAA  41 esekkirelfkeakeka.kpsilfiDE 66 
                  + ++ r  +  a++ a +p  l++DE
  CTQ26654.1 130 SGGQRQRVGI--ARALAaNPQLLLLDE 154
                 3333333333..333333467777777 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.1e-05    0.0079      43      66 ..      25      48 ..      14      58 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-05
       Rad17 43 rkkriLLisGPsGCgkstvvkvLs 66
                +  ++L++ GPsGCgk+t ++ ++
  CTQ26654.1 25 ESGELLVVLGPSGCGKTTLLNLIA 48
                34479**************99877 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.8e-05     0.013     124     160 ..      22      58 ..       2      64 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.8e-05
       T2SSE 124 kavrerglilvsGgTgsGKttllyallkeinksderi 160
                   +++  l++v G+ g GKttll+ +  +++ ++  i
  CTQ26654.1  22 LTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58 
                 4456678899*****************9999885444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.0   2.4e-05     0.018      16      40 ..      21      48 ..      16      57 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.4e-05
      AAA_23 16 dF...skgltlItGpNGaGKTTildAik 40
                ++   s  l ++ Gp G+GKTT+l+ i 
  CTQ26654.1 21 NLtleSGELLVVLGPSGCGKTTLLNLIA 48
                44445567999*************9985 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   7.2e-05     0.054       2      21 ..      29      48 ..      28      51 .. 0.89
   2 ?   -0.2   0.0       1.1   8.2e+02      91     115 ..     153     177 ..     127     193 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.2e-05
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                l+++ G++G+GKTtLl  +a
  CTQ26654.1 29 LLVVLGPSGCGKTTLLNLIA 48
                689*************8776 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
                 TT-SS-TCH.........HHHHHCT CS
       NACHT  91 DelvtdlgqkekqpvrtlLselirk 115
                 De    l++ ++++++tlL +l  +
  CTQ26654.1 153 DEPFGALDAFTREQMQTLLLKLWHE 177
                 4555555555666667777776665 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   0.00012     0.087      61      88 ..     144     171 ..     100     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00012
     SbcCD_C  61 epalrlvfLDEAFsklDeesiatllell 88 
                   +++l++LDE F+ lD+ +++++  ll
  CTQ26654.1 144 AANPQLLLLDEPFGALDAFTREQMQTLL 171
                 45699*************9999987765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00035      0.26       1      19 [.      29      47 ..      29     196 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00035
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                l+++ G++G+GK+tl+  +
  CTQ26654.1 29 LLVVLGPSGCGKTTLLNLI 47
                67899**********8766 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00027       0.2      30      54 ..      24      48 ..      19      80 .. 0.83
   2 ?   -2.1   0.1       3.3   2.5e+03     170     188 ..     169     187 ..     160     188 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
      AAA_25 30 lpagelallaGapgtGKttlaldla 54
                l  gel ++ G++g+GKttl+  +a
  CTQ26654.1 24 LESGELLVVLGPSGCGKTTLLNLIA 48
                67899***************86665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.3
      AAA_25 170 ealeriarrtgaavllvhH 188
                 + l ++ ++tg  vll+ H
  CTQ26654.1 169 TLLLKLWHETGKQVLLITH 187
                 5566777999999999999 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00023      0.18      23      39 ..      27      44 ..      17      56 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00023
      AAA_29 23 g.atlltGpsGsGKSTll 39
                g   ++ GpsG GK+Tll
  CTQ26654.1 27 GeLLVVLGPSGCGKTTLL 44
                3477899**********9 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0003      0.22       3      23 ..      28      48 ..      26      66 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0003
      AAA_14  3 kilvitGaRrvGKTtllkqli 23
                ++lv+ G+  +GKTtll+ ++
  CTQ26654.1 28 ELLVVLGPSGCGKTTLLNLIA 48
                689*************98765 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.085        64     243     265 ..      25      48 ..      21      56 .. 0.81
   2 ?    6.8   0.0    0.0033       2.4     322     371 ..     128     177 ..     113     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.085
                 -SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 243 pkG.vtlIvGggfhGKsTLLeAle 265
                   G + ++ G+   GK+TLL+ ++
  CTQ26654.1  25 ESGeLLVVLGPSGCGKTTLLNLIA 48 
                 567688999***********9776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0033
                 S--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG- CS
  ABC_ATPase 322 dASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskeke 371
                 + SG   q + i++al a+ +llL+DE   A     r ++   l++ ++e
  CTQ26654.1 128 QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWHE 177
                 5699999************************9999988776666665655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00037      0.27      22      60 ..      27      65 ..      11      87 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00037
  Mg_chelatase 22 gHnlllvGppGsGKtmlakrlpsllpplseeealevaki 60
                  g  l+++Gp+G+GKt l + +++ +p  + + +le +++
    CTQ26654.1 27 GELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLEGQRV 65
                  5568899*****************999888877777665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00047      0.35       2      23 ..      30      51 ..      29      62 .. 0.85
   2 ?   -1.9   0.0       4.2   3.1e+03      65      90 ..     146     171 ..     122     221 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00047
                EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5  2 vlLvGppGtgKselaerlaaal 23
                ++++Gp+G+gK++l   +a ++
  CTQ26654.1 30 LVVLGPSGCGKTTLLNLIAGFV 51
                5789***********9998766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.2
                 G-SEEEEESGGG--HHHHHHHHHHHH CS
       AAA_5  65 egeilvlDEveraesevlnsLlslle 90 
                 ++++l+lDE + a ++ + + ++ l 
  CTQ26654.1 146 NPQLLLLDEPFGALDAFTREQMQTLL 171
                 66666666655555555544444444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00057      0.43       2      19 ..      31      48 ..      30      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00057
  RNA_helicase  2 wlyGpsgeGKStlakeLa 19
                  ++ Gpsg+GK+tl + +a
    CTQ26654.1 31 VVLGPSGCGKTTLLNLIA 48
                  799**********99865 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0014         1       5      22 ..      30      47 ..      27      70 .. 0.82
   2 ?   -1.0   0.1       1.7   1.3e+03     108     134 ..     164     191 ..     161     194 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0014
      AAA_24  5 iliyGpsgiGKTtlakel 22
                +++ Gpsg GKTtl++ +
  CTQ26654.1 30 LVVLGPSGCGKTTLLNLI 47
                6899**********9876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.7
      AAA_24 108 aeefrrllkklqelrk.nvifiahektr 134
                 +e+++ ll kl++  + +v +i h  ++
  CTQ26654.1 164 REQMQTLLLKLWHETGkQVLLITHDIEE 191
                 67788888887765555****9997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2025.81
//
Query:       CTQ26655.1  [L=275]
Description: taurine transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-23   83.5  15.7    1.5e-23   83.5  15.7    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
          6    7.9   7.0        9.4    7.2   0.5    3.8  3  HEAT_PBS      PBS lyase HEAT-like repeat


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   3.4      0.35   3.2e+03     104     139 ..      19      52 ..       3      97 .. 0.48
   2 !   83.5  15.7   1.6e-27   1.5e-23       1     181 [.      98     269 ..      98     271 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.35
  BPD_transp_1 104 PnalppiitglilafggllggavlleflgswpGlgt 139
                   P++   +++ + la+ +++  av+++ l+s  +l +
    CTQ26655.1  19 PLSRELTLSVATLAVLLAVWWAVAALQLIS--PLFL 52 
                   555555555555555555555555555552..2333 PP

  == domain 2  score: 83.5 bits;  conditional E-value: 1.6e-27
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   g+++Gi ++   n++++ +l+pli++ + +P+++ ++l+v       ++g + ++ i+l+ l ++++v +   a+++s ++  ++aar lGasr q+
    CTQ26655.1  98 GVPVGIAMG--LNSTVRGILDPLIELYRPVPPLAYLPLMV------IWFGIGETSKILLIYLAIFAPVAMSALAGVKSAQQVRIRAARSLGASRAQV 186
                   89*******..*****************************......9************************************************** PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldp 181
                   ++ v+lP alp i+tgl++ +g  +   v++e++++  Glg ++ +a +   ++  + +g+++++i+ +ll l +++lqr l p
    CTQ26655.1 187 LWLVILPGALPEILTGLRIGLGVGWSTLVAAELIAATRGLGFMVQSAGEFLATDVVL-AGIAVIAIIAFLLELGLRALQRRLTP 269
                   ******************************************************999.99999999999999999999998876 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3         2   1.8e+04       4       9 ..      39      44 ..      38      47 .. 0.56
   2 ?    7.2   0.5    0.0011       9.4       1      15 [.     171     193 ..     171     204 .. 0.71
   3 ?    2.3   0.0     0.043   3.8e+02       4      14 ..     221     231 ..     219     258 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
                HHHHHH CS
    HEAT_PBS  4 aAakaL 9 
                +A+ aL
  CTQ26655.1 39 WAVAAL 44
                455555 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHCTS........G CS
    HEAT_PBS   1 vRraAakaLgqlgd........e 15 
                 vR +Aa++Lg+ ++        +
  CTQ26655.1 171 VRIRAARSLGASRAqvlwlvilP 193
                 8**********998666666663 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.043
                 HHHHHHHHCTS CS
    HEAT_PBS   4 aAakaLgqlgd 14 
                 aA+++Lg +  
  CTQ26655.1 221 AATRGLGFMVQ 231
                 89*****9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2200.29
//
Query:       CTQ26656.1  [L=283]
Description: taurine dioxygenase, 2-oxoglutarate-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-67  227.6   4.4    2.6e-67  227.5   4.4    1.0  1  TauD         Taurine catabolism dioxygenase TauD, TfdA family
  ------ inclusion threshold ------
      0.084   12.0   0.0       0.11   11.6   0.0    1.1  1  ArsA_ATPase  Anion-transporting ATPase


Domain annotation for each model (and alignments):
>> TauD  Taurine catabolism dioxygenase TauD, TfdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.5   4.4   2.9e-71   2.6e-67       2     268 .]       7     272 ..       6     272 .. 0.95

  Alignments for each domain:
  == domain 1  score: 227.5 bits;  conditional E-value: 2.9e-71
        TauD   2 vkpltpkfgae..gvdlsdleslddelkeelrellaeygvvvfrgfplspeqqlefarrfGplygtpgrgtntkygevldvssvyesadianlayttll 98 
                 ++pl p +ga+  g dl+++  l+d ++e+l  ++++++vv++r ++++p+qq+++a rfG l+++p +++ +  +e+ + ++   + d+++    + +
  CTQ26656.1   7 ITPLGPYIGAQvsGADLTRP--LSDNQFEQLYHAVLRHQVVFLREQNITPAQQRDLALRFGDLHIHPVYPHAPGVEEIIVLDT---HNDNPP---DNDN 97 
                 79*****************9..9999******************************************************776...444444...3445 PP

        TauD  99 wHtDlsylesppgiqlLhcleapatGGetpfvDgraaynaLpeelpellegltavrvyyhyrg......gglrteqelpavdkhprtghpvvrthpvlt 191
                 wHtD ++ ++pp   +L ++e p tGG+t++ +g aa++aL+e  ++ll gl+a+++++++++       + ++++ ++av+khp+  hpvvrthpv t
  CTQ26656.1  98 WHTDVTFIDTPPAGAILAAKELPTTGGDTLWTSGIAAWEALSEPFRQLLSGLHAEHDFRKSFQeykynkTEAEHRRWQEAVAKHPPLLHPVVRTHPV-T 195
                 ********************************************************************9999999*********************8.* PP

        TauD 192 grkallvnppfatrieglgtpeskelldaleelledpeftyrfqwqeGdlvifdNrrvlHgrt.afdegeeRhllrcy 268
                 g++al+vn+ f+tri++++++es++ll++l++++++pef++r++wq++d++i+dNr ++H +  ++ +  +R ++r++
  CTQ26656.1 196 GKQALFVNEGFTTRIVEVSEKESAALLNFLFAHVTKPEFQVRWRWQPNDVAIWDNRVTQHYANaDYLPQ-RRIMHRAT 272
                 ***************************************************************999555.******86 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.3e-05      0.11      84     174 ..      56     147 ..      43     178 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.3e-05
                  GSCCHHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHH...CSSSSEEEEESBSCCHTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSH CS
  ArsA_ATPase  84 eeallgleeledvlaeelaslPGideilsfeellkyvk...eeeydvvvlDtaPTGhtlrllslpevleklleklvklkeklsplakqlvkllg 174
                  +++ l l+  +  ++      PG++ei+ +++ ++      + + dv  +Dt+P G  l   +lp++ + +l   ++   + + l++++ +ll+
   CTQ26656.1  56 QQRDLALRFGDLHIHPVYPHAPGVEEIIVLDTHNDNPPdndNWHTDVTFIDTPPAGAILAAKELPTTGGDTLW--TSGIAAWEALSEPFRQLLS 147
                  555666666666666667777***********999865322444599*******************9988876..2222334444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2305.47
//
Query:       CTQ26657.1  [L=572]
Description: Acyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-23   83.0   0.0      5e-23   81.7   0.0    1.7  1  Acetyltransf_5   Acetyltransferase (GNAT) domain
      1e-11   44.6   0.0    1.7e-11   43.9   0.0    1.4  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acetyltransf_5  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   5.6e-27     5e-23       1     100 [.     322     422 ..     322     423 .. 0.95

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 5.6e-27
  Acetyltransf_5   1 LRyevFreemgaegeaaapeldiDefDavcdhllvideae.evVGtyRllrpdeae...rlegfysesefd.lsklaalrrrllElgRscvhpey 90 
                     LR+ +Fr++++++g++    +diD +D+ + hl+++de+  e+VG+yR+++++ +    +leg ys s+f+   +++++ ++ +ElgRs+++p+y
      CTQ26657.1 322 LREIAFRAVGEGSGKR----RDIDGYDDDYLHLILWDEEDlEIVGAYRFMPTAIQLakrGLEGIYSYSLFHyDGRMDDVLQHGIELGRSFIQPRY 412
                     8***************....****************999989********99998887777**********8889999999************** PP

  Acetyltransf_5  91 Rnkralellw 100
                     +++r+l++lw
      CTQ26657.1 413 WGRRGLDYLW 422
                     ********** PP

>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   1.9e-15   1.7e-11       4     134 ..      65     191 ..      62     192 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 1.9e-15
  Acyltransferase   4 vtglenlpekgpailvaNHqsy.lDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegklvv 96 
                       + le++pe gp++++aNH +  lD l l +++  s+++r+v+++ +++l  ++ l+ l+  ++ i  +      a+++l+++ + l++g +++
       CTQ26657.1  65 AHDLEQIPEYGPLVIIANHPTGtLDGLALLYAV--SRVRRDVKVVTNRMLTHLEPLSSLFIPVDNIHGRT-----AKAALQQMDQQLQAGGVLI 151
                      5899***************9999********99..5556**************99999999999888877.....8899*************** PP

  Acyltransferase  97 iFPEGtrsregel....lpfkkGlvrlaakakkgvpivPvai 134
                      +FP G +sr ++      +++ G+++laak     p++P +i
       CTQ26657.1 152 FFPAGEVSRLTRRgirdKKWHSGFIKLAAKY--RAPLLPAWI 191
                      *****99999777778899999*********..******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.20s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4365.27
//
Query:       CTQ26658.1  [L=163]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-05   22.7   0.2    0.00011   22.2   0.2    1.2  1  Y1_Tnp    Transposase IS200 like


Domain annotation for each model (and alignments):
>> Y1_Tnp  Transposase IS200 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.2   6.4e-09   0.00011       8     118 ..      16     116 ..      11     119 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 6.4e-09
      Y1_Tnp   8 ivlvtkyRrkvltgeveerlkeiikeiaekkevkilelelmpDHvHllvelppkl.siskivkalkgassrlinkefpelkkkklkkeslWqrgYfvst 105
                 +++  k+Rr++  +e  e l+  ++ + ++  + i ++ + p+H+H++ +lp ++ + s+  + +kg  sr ++       ++      lWq+++  ++
  CTQ26658.1  16 FTVNLKDRRSMHLTENIELLRYSVAVVKQHRPFIIDAWVVLPEHLHCIWTLPHNDdDFSSRWRDIKGCFSRTLK-------RQ-----PLWQPRFWEHA 102
                 56778999999888888899999999***********************99877659*****************.......33.....36777777777 PP

      Y1_Tnp 106 vgea.sletvkrYI 118
                 ++++ +      YI
  CTQ26658.1 103 IRDEdDYRRHVDYI 116
                 76665666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1255.43
//
Query:       CTQ26659.1  [L=324]
Description: porphobilinogen synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.3e-134  446.7   0.2   4.8e-134  446.5   0.2    1.0  1  ALAD      Delta-aminolevulinic acid dehydratase
  ------ inclusion threshold ------
      0.073   12.5   0.0       0.24   10.9   0.0    1.7  2  ComA      (2R)-phospho-3-sulfolactate synthase (ComA)


Domain annotation for each model (and alignments):
>> ALAD  Delta-aminolevulinic acid dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.5   0.2  5.4e-138  4.8e-134       2     316 ..       6     319 ..       5     320 .. 0.99

  Alignments for each domain:
  == domain 1  score: 446.5 bits;  conditional E-value: 5.4e-138
                 --GGGGGSSHHHHHHC-S----GGGEEEEEEEESS-SS-EE-TTSTT-EEEEGGGHHHHHHHHHHTT--EEEEEEE-SS-BSS-GGGGSTTSHHHHHHH CS
        ALAD   2 krlrrlrksealrelvretrlsasdlilplfvkegeeekeeiksmpgvyrlsvdelvkeveelvklgikavllFgvpeekdeegsealnedglvqrair 100
                 +r+rrlr+s+alr+l++et+ls +dl+lp+fv+e+ +  ++i++mpgv+r++ + l++e+e+++++gi++v+ Fg+ ++ d++gs+++ne+glv r+ r
  CTQ26659.1   6 TRPRRLRQSAALRALFEETTLSLNDLVLPIFVEEEIDDYKAIEAMPGVMRIPEKYLAREIERIANAGIRSVMTFGISHHTDATGSDTWNENGLVARMSR 104
                 79************************************************************************************************* PP

                 HHHHH-TTSEEEEEE-STTTBSS-SSSEEESS.EEHHHHHHHHHHHHHHHHHCT-SEEEE-S--TTHHHHHHHHHHHTT-TT-EEB---EEB--CGGHH CS
        ALAD 101 aikeevpelvvitDvclceytshGhcgileekevdndetlellakvavsqaeaGadivapSdmmDgrvaaireaLdeagfeevailsYsaKyaSafYgP 199
                   k++vpe++v++D+c+ceytshGhcg+l ++ vdnd+tle l k+av+ a aGad++apS  mDg+v+air++Ld+agf+++ai+sYs+K+aS+fYgP
  CTQ26659.1 105 ICKSTVPEMIVMSDTCFCEYTSHGHCGVLCDHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRRSLDAAGFTNTAIMSYSTKFASSFYGP 203
                 *****************************9999****************************************************************** PP

                 HHHHHT---S.S--TTTSB-TT-HHHHHHHHHHHHHTT-SBEEEES-TTGHHHHHHHHTT-SS-EEEEE-HHHHHHHHHHHHTTSS-HHHHHHHHHHHH CS
        ALAD 200 FrdaaesapsfgdrktYqmdpansrealreveldleeGADivmvKPalaylDiirevkeefdlpvaayqvSGEYamikaaaengwldekkvvlEsllsi 298
                 Fr+aa++a  +gdrktYqm p n+rea+re  ld ++GAD++mvKPa aylDi+r+++e++dlp+ ayqvSGEYamik aa++g++de+kvvlEsl +i
  CTQ26659.1 204 FREAAGTAL-KGDRKTYQMSPMNRREAIRESLLDEAQGADCLMVKPAGAYLDILRDIRERSDLPLGAYQVSGEYAMIKFAAQAGAIDEEKVVLESLGAI 301
                 ********9.7**************************************************************************************** PP

                 HHTT-SEEEETTHHHHHH CS
        ALAD 299 kRAGadliltYfakevak 316
                 kRAGadli++Yfa ++a+
  CTQ26659.1 302 KRAGADLIFSYFALDLAE 319
                 **************9986 PP

>> ComA  (2R)-phospho-3-sulfolactate synthase (ComA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.6e-05      0.24      96     146 ..      44      92 ..      38     126 .. 0.80
   2 ?   -2.9   0.0      0.43   3.9e+03      38      67 ..     278     307 ..     271     310 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.6e-05
                 -SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHHTT--CCH CS
        ComA  96 fdviEvsdgtlelpeeeklrliekakkeglkvlpevgkkdgelesesdvek 146
                  ++iE + g++++pe+  +r ie+++++g++ ++ +g+ ++  ++++  ++
  CTQ26659.1  44 YKAIEAMPGVMRIPEKYLAREIERIANAGIRSVMTFGISHH--TDATGSDT 92 
                 689***********************************888..33333333 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.43
                 EEEE-TTGGGGSTCHHHHHHHHHHHCTT-E CS
        ComA  38 glKlgggtsallpeeilrekielahehgvy 67 
                 ++K++    a+ +e+++ e +  ++++g +
  CTQ26659.1 278 MIKFAAQAGAIDEEKVVLESLGAIKRAGAD 307
                 678888888888888888888887777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2356.65
//
Query:       CTQ26660.1  [L=386]
Description: beta-lactamase/D-alanine carboxypeptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-60  205.0   1.5    2.3e-60  204.6   1.5    1.0  1  Beta-lactamase  Beta-lactamase
     0.0085   15.6   0.0      0.026   14.0   0.0    1.7  2  Peptidase_S11   D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.6   1.5   2.5e-64   2.3e-60      12     314 ..      46     357 ..      31     369 .. 0.89

  Alignments for each domain:
  == domain 1  score: 204.6 bits;  conditional E-value: 2.5e-64
                     TTESEEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBGGGTST...TCTTGGGTTEBHHHHHTTH CS
  Beta-lactamase  12 ggipGvavavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpVskylP...efagpgkgkiTlrdLltHt 103
                      g+ G+a++v+++++ v ++++G    ++++  + d++ riaS++K++t+ ++ +l ++G + L+dp+sky P   + ++ ++++iTl +L+tHt
      CTQ26660.1  46 SGATGMALVVIDGNQRV-FRSFGETRPGNNQHPQLDSVIRIASLSKLMTSEMLVKLLDQGVVKLNDPLSKYAPpgaRVPDWQGKPITLVNLATHT 139
                     4689************9.55667677777778888**************************************999777778889********** PP

                     SSCSSSSTSTTCTSHHHTH...HHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHHHTSHHHHHHHHHTTTTTTSTTEESSTTGGGGGGBEE CS
  Beta-lactamase 104 sGlpdlfasdlleeaaada...aellralatlppkyapGtkwgYsntgygllgellekvtgrsleqllreeilrpLgmkdtelgppesgdprdaa 195
                     s lp++++ +++ +    +   ++ +  l+t+ +k apG++ +Ysn++++ll+ +l  ++g+++ ql++e+i+rpLgmkdt+++p ++++ r+  
      CTQ26660.1 140 SALPREQPGGAAHRPVFVWptrQQRWNWLSTATLKTAPGSQAAYSNLAFDLLADALSTAAGKPYPQLFEEQITRPLGMKDTTFTPSPDQCQRLMI 234
                     ***9995555555555555***********************************9**************************************** PP

                     EEEEETCEEECSCETTHHHHCTTTBEEEEHHHHHHHH.......HHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCH.TE CS
  Beta-lactamase 196 gytgngpearappanlpaeaegagglistardlarfl.......glalegglllsaetlaqltaklssgttrpagiraglglGwvladktga.pg 282
                       +g++p     +a       g+gg++st+ d++r++          + +++   ++   q  + ++     ++g +++lglGwv+++++++ pg
      CTQ26660.1 235 PEKGASPCNNTLAAI------GSGGVYSTPGDMMRWMqqflssdFYTRSQQADRMQTLIYQRNQLTRVIGMDVPGRADALGLGWVYMKPKNGhPG 323
                     997666554444444......6899*************9999986667777888888888889999999999***************99999*** PP

                     EEEEEE..STEEEEEEEECGGTEEEEEEESBCSS CS
  Beta-lactamase 283 tfghtG..ggygtyvfvdpeanlvvavltnrdpp 314
                     ++++tG  gg+ ty++++p+an++++v+++r p 
      CTQ26660.1 324 IIQKTGggGGFITYMAMNPQANVGAFVVVTRSPL 357
                     ******************************9986 PP

>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.9e-06     0.026      33      65 ..      80     112 ..      75     118 .. 0.90
   2 ?   -2.2   0.0      0.25   2.2e+03     132     142 ..     213     223 ..     209     225 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.9e-06
                    TS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEE CS
  Peptidase_S11  33 devveiASltKlmTaylvlealkkgklkeddkv 65 
                    d v +iASl+KlmT+ ++++ l++g +k++d++
     CTQ26660.1  80 DSVIRIASLSKLMTSEMLVKLLDQGVVKLNDPL 112
                    7899*********************99999875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.25
                    HHTT-TT-B-S CS
  Peptidase_S11 132 kelGlkntkfv 142
                    + lG+k+t+f+
     CTQ26660.1 213 RPLGMKDTTFT 223
                    569******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2820.46
//
Query:       CTQ26661.1  [L=177]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-26   93.8   0.7    1.7e-26   93.5   0.7    1.1  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.7   9.5e-31   1.7e-26       3     159 ..       7     142 ..       5     154 .. 0.93

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 9.5e-31
  Isochorismatase   3 lvviDmqndfveegvkeseeisavveninkllkaarkagipviftrdvheleevkgdlderkaaphfkpgttgaelvpelaplegdvvvdKtrf 96 
                      + v+Dmqn+++   +    + ++ v++in+l++aa     +vif+++                 + ++ g++g +l+pel++ +g   v+Kt  
       CTQ26661.1   7 VMVVDMQNGVF---ATPRLARERCVAQINRLVRAAD----KVIFIQHDEA--------------GGLEAGSEGFALLPELEQPAGALYVTKTAC 79 
                      679********...788889999************7....69***99999..............99**************************** PP

  Isochorismatase  97 safagtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaa 159
                      +af+ t+l ++L+e+ i++ v++G+atd+C ++t+  ++ +Gy +v+++DA  + ++ + +aa
       CTQ26661.1  80 DAFYHTSLAQVLDEHDIQQFVICGCATDYCLDTTIKNGASRGYGIVIAEDAHTTADRPAAQAA 142
                      ***************************************************999998885555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1462.88
//
Query:       CTQ26662.1  [L=406]
Description: transporter involved in cell envelope modification [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     4e-164  545.6  10.2     4e-164  545.6  10.2    1.5  2  SbmA_BacA       SbmA/BacA-like family
    9.4e-15   54.7   2.0    9.4e-15   54.7   2.0    2.3  2  ABC_membrane_2  ABC transporter transmembrane region 2


Domain annotation for each model (and alignments):
>> SbmA_BacA  SbmA/BacA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.33   2.9e+03      81     117 ..      15      50 ..      10      55 .. 0.47
   2 !  545.6  10.2  4.5e-168    4e-164       1     314 [.      80     393 ..      80     394 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.33
   SbmA_BacA  81 shyifrWrtamneyyiskwdklreieGasqrvqedtm 117
                 s +i+    a++ +     d l ++ Gasq v     
  CTQ26662.1  15 SAFIWSL-LAVIFWQAGGGDWLLRVTGASQNVAISAA 50 
                 3333221.23444444444445556666666655555 PP

  == domain 2  score: 545.6 bits;  conditional E-value: 4.5e-168
   SbmA_BacA   1 dkkWqlWsilgtalilfvlyfqvevsvkvnaWygpfydliqkalaapekvtieefyaelldfllialvavviavlnaffvshyifrWrtamneyyiskw 99 
                 +++Wq+Wsilgt+li+fv++f vev v++naWy+pfydliq+ala+p+kv+i++fy+e+  fl ia++av+i+v+n+ffvshy+frWrtamne+y+++w
  CTQ26662.1  80 PHRWQYWSILGTSLIIFVTWFLVEVGVAINAWYAPFYDLIQSALATPHKVSINQFYQEIGVFLGIAIIAVIIGVMNNFFVSHYVFRWRTAMNEHYMAHW 178
                 69************************************************************************************************* PP

   SbmA_BacA 100 dklreieGasqrvqedtmrfakiledlGvslvkaimtliaflPvlfelskkvkvlpilgeiekslviaalvwslgGtvlllvvGiklpglefnnqkvea 198
                 ++lr+ieGa+qrvqedtmrfa++led+Gvs+++a+mtliaflPvl++ls++v+ lpi+g+++++lviaa+vwsl+Gt ll+vvGiklpglef+nq+vea
  CTQ26662.1 179 QHLRHIEGAAQRVQEDTMRFASTLEDMGVSFINAVMTLIAFLPVLVTLSEHVPDLPIVGHLPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVEA 277
                 *************************************************************************************************** PP

   SbmA_BacA 199 ayrkelvygeddvdrakpatlkelfkdvrknyfrlylhylyfniarilylqldnlfallllapsivagkitlGvlkqitnafgkvreslqylinsWtti 297
                 ayrkelvygedd++ra+p t++elf++vr+nyfrly+hy+yfniarilylq+dn+f+l+ll+psivag+itlG+++qitn+fg+vr+s+qyli+sWtt+
  CTQ26662.1 278 AYRKELVYGEDDETRATPPTVRELFRAVRRNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLISSWTTL 376
                 *************************************************************************************************** PP

   SbmA_BacA 298 vellsiykrlrafeski 314
                 vel+siykrlr+fe ++
  CTQ26662.1 377 VELMSIYKRLRSFEREL 393
                 **************987 PP

>> ABC_membrane_2  ABC transporter transmembrane region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   2.0     1e-18   9.4e-15       7     200 ..      79     283 ..      73     285 .. 0.87
   2 ?   -1.0   0.2      0.11   9.6e+02     223     264 ..     298     338 ..     293     343 .. 0.67

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1e-18
  ABC_membrane_2   7 pklkskeallllvlllllvlrtllsvlva..qldgklvkalva.......knvraFvlsllkfallavpasfvnsalkYltqkLalafRkrLtkh 92 
                     ++++++ + +l++ l++ v+  l++v va   +   ++  ++         + ++F++++++f+ +a++a+++ ++ +++ +    ++R+ +++h
      CTQ26662.1  79 CPHRWQYWSILGTSLIIFVTWFLVEVGVAinAWYAPFYDLIQSalatphkVSINQFYQEIGVFLGIAIIAVIIGVMNNFFVSHYVFRWRTAMNEH 173
                     67778888888877777666666665554115667777777777777988899****************************************** PP

  ABC_membrane_2  93 llseYlknrtyYkvsnlderidnpDqritqDvekFtsslssLlsglvkpildvilftfiLwslsgtlgl............lllllyvllatvil 175
                     ++ ++         ++l+  i+ + qr+++D  +F+s+l ++  + +++++++i f   L++ls                 +++++  l++t +l
      CTQ26662.1 174 YMAHW---------QHLRH-IEGAAQRVQEDTMRFASTLEDMGVSFINAVMTLIAFLPVLVTLSEHVPDlpivghlpyglvIAAIVWSLMGTGLL 258
                     99998.........56776.888*************************************999988766789*******988888999999**** PP

  ABC_membrane_2 176 riigpplgklvaeeeklegefRylh 200
                      ++g +l  l +++++ e+++R ++
      CTQ26662.1 259 AVVGIKLPGLEFKNQRVEAAYRKEL 283
                     **********************987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.11
  ABC_membrane_2 223 lqrrfkslidnlrrilsrrlrlgiieafvlkYlasilgyvlv 264
                     + + f+++ +n+ r++   ++++i++ ++  ++ +++g+ l 
      CTQ26662.1 298 VRELFRAVRRNYFRLYFHYMYFNIARILY-LQVDNVFGLFLL 338
                     55667777777777777777777766666.677777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1067  (0.0595125); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 2937.73
//
Query:       CTQ26663.1  [L=368]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-147  490.0   0.0   3.5e-147  489.7   0.0    1.0  1  DUF1615   Protein of unknown function (DUF1615)


Domain annotation for each model (and alignments):
>> DUF1615  Protein of unknown function (DUF1615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  489.7   0.0    2e-151  3.5e-147       2     320 .]      53     367 ..      52     367 .. 0.99

  Alignments for each domain:
  == domain 1  score: 489.7 bits;  conditional E-value: 2e-151
     DUF1615   2 vkdregWaediaaalealkiaktkenvcavlAvieqeSsfqadpavpglgkiarkeieeraeklevpkllveaalkkkspdGktykerldavrtekeld 100
                 vkdre+Wa++ia+a++++k+a+t+envc+vlAv++qeS++q dp+vpgl kia++ei++raek+++p +lv++alk +sp+Gk+y++rld+v+tek+l+
  CTQ26663.1  53 VKDREAWAQAIATAFDSQKLAPTEENVCSVLAVAQQESNYQSDPVVPGLNKIAWQEIDRRAEKMHIPPFLVHTALKITSPNGKSYSDRLDNVKTEKQLS 151
                 89************************************************************************************************* PP

     DUF1615 101 elyedliaevllgkklleelnpvttgGpmqvsvafAeeharkkypyeakgslReevftrrGglyfGiarLleYpaaYdkplyrfADfNaGvYaSRNAaf 199
                 ++++d+i +v++g+kl+++lnpv+tgGpmqvs+afAe+h++  yp +++g++R+evf+ rGgl+fG+ +Ll+Ypa+Y++plyrfADfNaG+YaSRNAaf
  CTQ26663.1 152 AIFDDFIGMVPMGQKLFGSLNPVHTGGPMQVSIAFAEQHTS-GYPWKMNGTVRQEVFSLRGGLWFGTYHLLNYPASYSAPLYRFADFNAGWYASRNAAF 249
                 ****************************************9.********************************************************* PP

     DUF1615 200 qaavsrlsgeklalDGDLllyekdesseasstekalralakrlklsekqirrdlkkeksadfeetelykkvfaladkkagkelpravlPqiklkspKis 298
                 q+av ++sg+klalDGDL++y+   s+e++ste a+r+la++l++s+++i+r+lkk++s +fe+t+ly++vf+la+kkagk+lpr++lP+i+l+spKi+
  CTQ26663.1 250 QNAVVKASGVKLALDGDLIRYD---SEEPGSTELAVRRLASQLGMSDSEIHRQLKKGDSLAFEKTDLYQQVFRLAEKKAGKTLPREMLPGIQLESPKIT 345
                 **********************...889*********************************************************************** PP

     DUF1615 299 rklttaWfAkrvdeRyqrClar 320
                 r+lttaWfAkrvdeR  +C+ar
  CTQ26663.1 346 RNLTTAWFAKRVDERRANCMAR 367
                 ********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2804.67
//
Query:       CTQ26664.1  [L=100]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-52  175.4   0.6      2e-52  175.3   0.6    1.0  1  DUF2755    Protein of unknown function (DUF2755)
  ------ inclusion threshold ------
      0.013   15.4   0.6      0.013   15.4   0.6    1.9  2  DUF2062    Uncharacterized protein conserved in bacteria (DUF
          7    6.6   8.2        7.9    6.5   1.0    2.1  2  Promethin  Promethin


Domain annotation for each model (and alignments):
>> DUF2755  Protein of unknown function (DUF2755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.3   0.6   3.3e-56     2e-52       1     100 []       1     100 []       1     100 [] 1.00

  Alignments for each domain:
  == domain 1  score: 175.3 bits;  conditional E-value: 3.3e-56
     DUF2755   1 maeislsksllsdkkreastsgnvayalfvllclwaGaqllnllvhapGvlerlmqaqesarpqveislavGtlfglvpflaGlvilgvlalilrlrrr 99 
                 mae+s+sksll++kkr a+t+++vay+lfvl+c+waGaq+l++l+hapGv+erlmqaq+++rpqv+islavGtlfgl+pfl+G++++gvlali+r+r+r
  CTQ26664.1   1 MAEFSFSKSLLGNKKRGALTGSHVAYGLFVLICCWAGAQMLSMLIHAPGVFERLMQAQDASRPQVDISLAVGTLFGLIPFLIGCTFIGVLALIVRWRQR 99 
                 9*************************************************************************************************9 PP

     DUF2755 100 r 100
                 r
  CTQ26664.1 100 R 100
                 8 PP

>> DUF2062  Uncharacterized protein conserved in bacteria (DUF2062)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.4     0.096   5.8e+02      25      48 ..      24      47 ..       8      53 .. 0.77
   2 ?   15.4   0.6   2.1e-06     0.013      13      52 ..      57      95 ..      49      98 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.096
     DUF2062 25 vaiGvfigflPifglqmllaalla 48
                va G+f+ +    g qml +++ a
  CTQ26664.1 24 VAYGLFVLICCWAGAQMLSMLIHA 47
                677777777766778887777765 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2.1e-06
     DUF2062 13 rlhlsprsvarGvaiGvfigflPifglqmllaallalllr 52
                 + +s+ +v  ++a+G+ +g++P+  +   ++ +lal++r
  CTQ26664.1 57 AQDASRPQVDISLAVGTLFGLIPF-LIGCTFIGVLALIVR 95
                4567889*****************.556666666677666 PP

>> Promethin  Promethin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.3    0.0054        32      65      93 ..      19      47 ..       4      52 .. 0.85
   2 ?    6.5   1.0    0.0013       7.9      24      56 ..      60      92 ..      50      96 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0054
   Promethin 65 felfvvgvallvLvpvLfitsflallvwl 93
                +++  v+ +l+vL+++ +++ +l++l+ +
  CTQ26664.1 19 LTGSHVAYGLFVLICCWAGAQMLSMLIHA 47
                78889999************999998765 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0013
   Promethin 24 senPllatflliqlllsllPlllFltfalstll 56
                 ++P + + l++ +l+ l+P+l+  tf  + +l
  CTQ26664.1 60 ASRPQVDISLAVGTLFGLIPFLIGCTFIGVLAL 92
                568888888888888888888887777655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 754.12
//
Query:       CTQ26665.1  [L=67]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-45  151.0   3.3    8.4e-45  150.9   3.3    1.0  1  DUF2754   Protein of unknown function (DUF2754)
      0.004   17.7   3.3        1.7    9.3   0.0    2.0  2  DUF2818   Protein of unknown function (DUF2818)
  ------ inclusion threshold ------
       0.02   15.2   1.5      0.021   15.1   1.5    1.0  1  DUF1761   Protein of unknown function (DUF1761)
       0.16   10.7   0.1       0.18   10.5   0.1    1.0  1  DUF2207   Predicted membrane protein (DUF2207)
        6.3    7.5   7.4    1.2e+02    3.4   0.8    2.0  2  DUF2627   Protein of unknown function (DUF2627)


Domain annotation for each model (and alignments):
>> DUF2754  Protein of unknown function (DUF2754)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   3.3   2.4e-48   8.4e-45       1      65 [.       1      65 [.       1      67 [] 0.97

  Alignments for each domain:
  == domain 1  score: 150.9 bits;  conditional E-value: 2.4e-48
     DUF2754  1 mklsakirrdwhyyavalGlifilnGvvGllGfeakGwqtyavGlvtwvisfwiaGliirrrpee 65
                mkl++kirrdwhyyavalGlifilnGvvGllGfe++Gwq+yavGl+twvisfwiaG++irrrp e
  CTQ26665.1  1 MKLTDKIRRDWHYYAVALGLIFILNGVVGLLGFETQGWQSYAVGLITWVISFWIAGFVIRRRPAE 65
                9**************************************************************76 PP

>> DUF2818  Protein of unknown function (DUF2818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00047       1.7      62      81 ..       5      24 ..       1      33 [. 0.78
   2 !    9.1   1.2   0.00054       1.9      64      89 ..      34      60 ..      29      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00047
     DUF2818 62 nvaaqgWeFYavtlslflvf 81
                +  +++W++Yav+l l++++
  CTQ26665.1  5 DKIRRDWHYYAVALGLIFIL 24
                56789********9987765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00054
     DUF2818 64 aaqgWeFYavtlslflv.fafpgfvyr 89
                 +qgW+ Yav l  +++ f + gfv r
  CTQ26665.1 34 ETQGWQSYAVGLITWVIsFWIAGFVIR 60
                68********998876648899**988 PP

>> DUF1761  Protein of unknown function (DUF1761)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   1.5   5.8e-06     0.021      78     124 ..      13      59 ..       3      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.8e-06
     DUF1761  78 llglllglgfiapaiisnalfekkslklvlIdagywlvtllvmgvil 124
                 + ++ lgl+fi+  ++    fe + ++ ++++ + w++++ + g ++
  CTQ26665.1  13 YYAVALGLIFILNGVVGLLGFETQGWQSYAVGLITWVISFWIAGFVI 59 
                 5678889*************************************997 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1     5e-05      0.18     379     437 ..       7      61 ..       2      66 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5e-05
     DUF2207 379 klkklsalglgliilglilillallllvlllvfllilllillliaiivlllfsrllgrr 437
                 ++  +++++++l++++++ ++++ll+    +   ++ +++++li +++ +++++++ rr
  CTQ26665.1   7 IRRDWHYYAVALGLIFILNGVVGLLG----FETQGWQSYAVGLITWVISFWIAGFVIRR 61 
                 45555666666666666655555555....67777777777777777777777766665 PP

>> DUF2627  Protein of unknown function (DUF2627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.8     0.033   1.2e+02      39      59 ..      13      33 ..       2      35 .. 0.75
   2 ?    2.7   7.8     0.055     2e+02      37      63 ..      36      61 ..      17      64 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.033
     DUF2627 39 wlqflaGlllfaiglgfiaGf 59
                   +++Gl++++ g+  + Gf
  CTQ26665.1 13 YYAVALGLIFILNGVVGLLGF 33
                456778999999998877776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.055
     DUF2627 37 slwlqflaGlllfaiglgfiaGfilhr 63
                + w + ++Gl++ +i+++ iaGf+  r
  CTQ26665.1 36 QGWQSYAVGLITWVISFW-IAGFVIRR 61
                349999**********97.8***9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 531.49
//
Query:       CTQ26666.1  [L=376]
Description: D-alanine-D-alanine ligase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-83  277.7   0.0    6.8e-83  277.2   0.0    1.2  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    3.8e-29  101.2   0.0    6.9e-29  100.3   0.0    1.4  1  Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
      9e-15   54.7   0.1    1.7e-14   53.8   0.1    1.3  1  ATP-grasp        ATP-grasp domain
    4.5e-07   29.6   0.3    7.3e-07   28.9   0.3    1.3  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
      4e-06   27.0   0.0    7.3e-06   26.1   0.0    1.4  1  ATP-grasp_3      ATP-grasp domain
    4.4e-06   26.4   0.5    5.4e-05   22.9   0.5    2.3  1  ATP-grasp_4      ATP-grasp domain
    7.8e-05   22.1   0.0      0.034   13.4   0.0    2.1  2  ATPgrasp_ST      Sugar-transfer associated ATP-grasp
     0.0048   16.5   0.1      0.026   14.1   0.1    2.1  1  RimK             RimK-like ATP-grasp domain
     0.0086   15.9   0.0      0.017   14.9   0.0    1.4  1  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr


Domain annotation for each model (and alignments):
>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.2   0.0   3.4e-86   6.8e-83       1     204 []     158     359 ..     158     359 .. 0.99

  Alignments for each domain:
  == domain 1  score: 277.2 bits;  conditional E-value: 3.4e-86
                      HHHHTT--B--EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--ESEEEEEEEEETS CS
  Dala_Dala_lig_C   1 llkaaGlpvvpyvvlekeeakeekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeaiegreievavlgne 94 
                      ll++aGl+v+p+++l++++  + +   +++ve++lg+p+fVKpa++GSSvGvskv++ee++++a++ af++d+kv+vE++i+greie+avlgn+
       CTQ26666.1 158 LLRDAGLAVAPFITLTRANRAQFS---FADVEAKLGLPLFVKPANQGSSVGVSKVKNEEQYHQAVALAFEFDHKVVVEQGIKGREIECAVLGND 248
                      7899*****************999...******************************************************************* PP

                      SCEEEEEEEEE-SSSSS-HHHHHC..TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS---STTSHHHHH CS
  Dala_Dala_lig_C  95 klevsevgeivvkkgfydyeakysd.dkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlPGfTeiSlfpkl 187
                      ++++s++geiv++++fy y++ky+d + aq++vpa++ +e+++ki+++a++ay++l+++G+aRvD+flt+++e+v+nE+NtlPGfT+iS++pkl
       CTQ26666.1 249 HPQASTCGEIVLNSEFYAYDTKYIDdQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDVFLTADNEVVINEINTLPGFTNISMYPKL 342
                      ***********************99899****************************************************************** PP

                      HHCTT--HHHHHHHHHH CS
  Dala_Dala_lig_C 188 akasGlefkkLvdqlie 204
                      ++asGl++++L+++lie
       CTQ26666.1 343 WQASGLDYTSLITRLIE 359
                      ***************96 PP

>> Dala_Dala_lig_N  D-ala D-ala ligase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.0   3.5e-32   6.9e-29       1     103 []      16     141 ..      16     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 3.5e-32
                      EEEEEEE-SSTTHHHHHHHHHHHHHHCHCCTEEEEEEEE-TTS-E..............HHHHHHHHTTHHH....................TC CS
  Dala_Dala_lig_N   1 kiavlfGGkStEhevSlvsaksvlkaldkekyeviligitkegkw..............kkkaekleskekk....................kl 60 
                      +++++fGGkS+EhevSl+sak++++a+dk++++v+l+gi+k+g w                          +                    +l
       CTQ26666.1  16 RVGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWhindagnyllnaqdP-----------ArialrpstvtlaqipgreaqQL 98 
                      699******************************************887665555555440...........14455555556666666666588 PP

                      CCCHCCCTCE--SEEEEE-TTTTTTSSHHHHHHHHTT--BSS- CS
  Dala_Dala_lig_N  61 kkeeekekkaeldvvfpvlhGkngEDGtlqgllellgipyvGs 103
                       ++e+ +  a++dv+fp++hG+ gEDG+lqg+l ++++p+vGs
       CTQ26666.1  99 INAESGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANLPFVGS 141
                      88999999**********************************7 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.1   8.5e-18   1.7e-14       2     157 ..     160     328 ..     159     331 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 8.5e-18
                 HTTT--B-EEEEECCHH....HHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC..GTTCEEEEE----.SEEEEEEEEE....ETTC- CS
   ATP-grasp   2 eklglpvprflaveske....eleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal..keekvivEefvpf.ekElsvlvvr....saeGe 89 
                 +++gl+v++f+++++++    ++ ++ ++lglp+ vK +  g++  G s v++ee+ +qa++ +   ++kv+vE+ ++  e E +vl+      s+ Ge
  CTQ26666.1 160 RDAGLAVAPFITLTRANraqfSFADVEAKLGLPLFVKPANQGSS-VGVSKVKNEEQYHQAVALAfeFDHKVVVEQGIKGrEIECAVLGNDhpqaSTCGE 257
                 5789*********99997767788899999*******8888776.7***************9999999*********9626799999987554456688 PP

                 EEE...--EEEEEEETTEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEE CS
   ATP-grasp  90 taf...ypvvetvqedgilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnEla 157
                 ++    +    t+  d+   ++v+pa++  +++ k+++ia ++ ++Lg  G+  v +F+++d+e+++nE+ 
  CTQ26666.1 258 IVLnseFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDVFLTADNEVVINEIN 328
                 554111344567778888999************************************************95 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.3   3.6e-10   7.3e-07       1     178 [.     151     329 ..     151     330 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 3.6e-10
                  SHHHHHHHHHHTT-BBSSEECSS.BSSHH.HHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEE CS
  CPSase_L_D2   1 Dkesakealkkinvpvvpssaap.vetle.ealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiE 96 
                  Dk+  k++l++++  v+p  + + ++ ++    ++ +++g P  +k+a  +   G   ++nee+ +++v+ a++        ++v ve+ +kg +eiE
   CTQ26666.1 151 DKDVTKRLLRDAGLAVAPFITLTrANRAQfSFADVEAKLGLPLFVKPANQGSSVGVSKVKNEEQYHQAVALAFEFD------HKVVVEQGIKG-REIE 241
                  78888899999999999877775222222133466789*******************************9999988......8********98.9*** PP

                  EEEEEETTS-EEEEEEEEECCEC........TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEES CS
  CPSase_L_D2  97 vevlrDakgnvitvcerenslql........rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNt 178
                  + vl   +  + t++e+    +           q   +v P+ ++ +e  +++r+ av++ +++g +g + v+  l + ++e ++ E+Nt
   CTQ26666.1 242 CAVLGNDHPQASTCGEIVLNSEFyaydtkyiDDQGAQVVVPA-AIAPEINDKIRAIAVQAYQTLGCSGMARVDVFLTA-DNEVVINEINT 329
                  ****99987776666543222222222336655666677777.47889999***********************9997.99999*****8 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.7e-09   7.3e-06       1     155 [.     149     328 ..     149     332 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.7e-09
                  HTSHHHHHHHHTTT.S-.--...........-EESS--........SSSEEEEESS-------B--SS--TTE.............EEEE---SEEEE CS
  ATP-grasp_3   1 asdKlktykkLkeagvk.vP.......tkleaeeleee........ekklvvKprdGaggesvrvveekeeaeaaieeve......lvqefieGkplS 76 
                  + dK  t + L++ag+  +P       +     +++++          +l vKp++ + + +v++v+++e+ ++a++         +v + i+G+++ 
   CTQ26666.1 149 CMDKDVTKRLLRDAGLAvAPfitltraN-----RAQFSfadveaklGLPLFVKPANQGSSVGVSKVKNEEQYHQAVALAFefdhkvVVEQGIKGREIE 241
                  5688888888999965515688663332.....222223355566677999******************99997766444677788************ PP

                  EEEEE.S....SSEEEEEEEEEEEET....TEEEEE..EES----H..HHHHHHHHHHHHTTSTT--EEEEEEEEESS..SEEEEEEE CS
  ATP-grasp_3  77 vsllsdg....ekvlvlavnrqliekaekefvyaGn..vtpietel..keevvelaeevvekleglaGyvGvDlvlkd.eepyviEvN 155
                    +l++     ++   +++n ++    +k +  +G   v+p+      +++++++a ++ + l g+ G++ vD+ l+  +e ++ E+N
   CTQ26666.1 242 CAVLGNDhpqaSTCGEIVLNSEFYAYDTKYIDDQGAqvVVPAAIAPeiNDKIRAIAVQAYQTL-GCSGMARVDVFLTAdNEVVINEIN 328
                  ****965111123334666776666666667778872244555444569**************.*********998873666666999 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.5   2.7e-08   5.4e-05       2     151 ..     190     330 ..     189     336 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.7e-08
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieGeEfavdayfdeeGepviln..ilkkefa..seedvs 95 
                   lP+ +KP+++ +S+GV+k++nee++++ava    e       ++      ++++vE+ i+G E+ + ++ + + ++  +   +l+ ef+  +++++ 
   CTQ26666.1 190 GLPLFVKPANQGSSVGVSKVKNEEQYHQAVAL-AFE-------FD------HKVVVEQGIKGREIECAVLGNDHPQASTCGeiVLNSEFYayDTKYID 273
                  5799************************9864.333.......34......34569999999999888887766544433222455555411455566 PP

  ATP-grasp_4  96 drl..yvtsakvieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnpl 151
                  d+    v++a++  e  +++  +  ++ + lg   + + + + +++d++++  E+n l
   CTQ26666.1 274 DQGaqVVVPAAIAPEINDKIRAIAVQAYQTLGCS-GMARVDVFLTADNEVVINEINTL 330
                  6655478888888888888888888888888875.66778888888888888788875 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0021       4.3      21      88 ..     151     216 ..     146     235 .. 0.80
   2 !   13.4   0.0   1.7e-05     0.034     227     271 ..     292     336 ..     282     348 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0021
  ATPgrasp_ST  21 dKlkfkelalraglkvpkllgvikeqaeiseleafvkeleeg..vviKpakgsgGkGilviteredqdyl 88 
                  dK ++k+l+ +agl v   +   + ++   +++++ ++l  g  +++Kpa++ +  G++++++  +++y 
   CTQ26666.1 151 DKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKL--GlpLFVKPANQGSSVGVSKVKN--EEQYH 216
                  999***************888888777777888888888..445********99999999966..45553 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.7e-05
  ATPgrasp_ST 227 evlelaakaaeklpglgylGwDivldeekgplllElNarpglaiv 271
                  ++ ++a++a+++l + g+  +D+ l++++++++ E+N+ pg + +
   CTQ26666.1 292 KIRAIAVQAYQTLGCSGMARVDVFLTADNEVVINEINTLPGFTNI 336
                  67789***********************************98765 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   1.3e-05     0.026     126     177 ..     288     341 ..     150     348 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.3e-05
                 ---HHHHHHHHHHHHHCT-S.EEEEE.EEEETTEEEEEEEESS--SHHHHHHHT CS
        RimK 126 qlseeekelAikaakamelv.vaGvD.llrakrgllvlEvnsspglekiektlg 177
                 +++++ + +A++a ++++   +a vD  l a++++++ E+n+ pg ++i+++ +
  CTQ26666.1 288 EINDKIRAIAVQAYQTLGCSgMARVDvFLTADNEVVINEINTLPGFTNISMYPK 341
                 67888999********99754899**555666666777************9976 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   8.3e-06     0.017       2      99 ..     151     245 ..     150     255 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.3e-06
                 BHHHHHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSE...EEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---SEEEEEE CS
      GARS_A   2 sKsfakdllkkagiptaeyeaftdpeeakeyieeataka...lVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleGeEvsll 97 
                 +K  +k+ll++ag+  a + ++t +++a+  + +++ak    l vK++   +  gv+ +k+ee+  +av+  +e   f    +kvv+E+ ++G E+ + 
  CTQ26666.1 151 DKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLglpLFVKPANQGSSVGVSKVKNEEQYHQAVALAFE---F---DHKVVVEQGIKGREIECA 243
                 68899************************999999999888899*****9999****99**********99996...5...59*************987 PP

                 EE CS
      GARS_A  98 al 99 
                 +l
  CTQ26666.1 244 VL 245
                 76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2921.36
//
Query:       CTQ26667.1  [L=227]
Description: putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-54  182.1   0.1    1.1e-53  181.9   0.1    1.0  1  Extensin-like_C  Extensin-like protein C-terminus


Domain annotation for each model (and alignments):
>> Extensin-like_C  Extensin-like protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.9   0.1     6e-58   1.1e-53       2     176 ..      54     226 ..      53     227 .] 0.90

  Alignments for each domain:
  == domain 1  score: 181.9 bits;  conditional E-value: 6e-58
  Extensin-like_C   2 aClaaleea..gvafeeladesegegCglekavrlsalaeevalssaallsCelaaalaawvreevqpaarellgsevariehlgsYaCRninn 93 
                      +C++ l+ea  +  +++ + ++++ +C+l++ vr+++ +++v+lss++l+sC+la++ a +++++++p++r+l+ s++++i+hlgs+aCRni++
       CTQ26667.1  54 QCASLLAEAnrRRLIASRPVADSEGSCPLRNVVRVAN-FGSVQLSSSFLASCPLALSSALYIEQQAKPLTRQLMASDLRQIDHLGSFACRNIYH 146
                      67777776633223334444444447***********.789***************************************************** PP

  Extensin-like_C  94 ragaklSeHakanAlDiagfeladgrrisvkkdweeeaeaaflravraaaCklFstvLgPdynaaHedHlHldlaergglrlC 176
                      r++a++SeHa+a+AlD++gf+ladgrr+sv ++w++e+++ +l+a+ +++C++F+++LgP+ynaaH++H+H+++   +g  +C
       CTQ26667.1 147 RQQARRSEHATADALDVSGFRLADGRRVSVLQGWRSETSRPWLAALLSSSCHYFGNALGPEYNAAHANHFHFGM---RGQGFC 226
                      **************************************************************************...666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1823.99
//
Query:       CTQ26668.1  [L=399]
Description: putative metabolite efflux transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-48  164.6  54.3    1.1e-28  100.2  26.5    2.0  2  MFS_1       Major Facilitator Superfamily
    1.9e-16   60.0  34.8    2.1e-11   43.4  13.2    3.1  2  Sugar_tr    Sugar (and other) transporter
    4.3e-12   45.6  22.7    5.8e-10   38.6  22.7    2.9  1  MFS_1_like  MFS_1 like family
    1.6e-06   26.8  25.5    7.2e-06   24.7  16.8    2.1  2  MFS_3       Transmembrane secretion effector
     0.0036   16.7  30.8      0.032   13.5   9.1    2.3  2  MFS_4       Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
        7.5    6.4  12.4        1.3    8.9   1.1    3.6  3  PGG         Domain of unknown function


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2  26.5   3.7e-32   1.1e-28       1     231 [.      11     236 ..      11     246 .. 0.82
   2 !   70.0  24.1   5.8e-23   1.7e-19       1     176 [.     217     395 ..     217     399 .] 0.85

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 3.7e-32
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispse.....igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvl 94 
                 ++++ f+++la+s ++p+lp ++ ++lg++ +e      gl +++ +l++a+ s+ +G+l+dr Gr+ +ll + l++a+++ll +fa+++w l++lr++
  CTQ26668.1  11 VWFGCFFTGLAISQILPFLP-LYVSQLGVTSHEalsmwSGLTFSVTFLVSAIVSPMWGSLADRKGRKLMLLRASLGMAIAILLQAFATNVWQLFILRAI 108
                 68999***************.78899**9999998888888***************************************4444499************ PP

       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgp 193
                 +Gl+ ++++p+++al+a  +p+e+ g a++ ls++   G+i gpllgg+la+++g r vf+i ai++ ++f++   l++ ++  r+ +s+ e++  t  
  CTQ26668.1 109 MGLT-SGYIPNAMALVASQVPRERSGWALSTLSTAQISGVIGGPLLGGFLADHVGLRMVFFITAILLTISFLV--TLFLIKEGVRPQVSKSERL--T-- 200
                 ***9.8****************************************************************997..7777777777777777772..2.. PP

       MFS_1 194 aplvpawkallkdpvlwillialllfffgfsg....lltllp 231
                        k+++++ +   l+i+l+++++++++    +   l 
  CTQ26668.1 201 ------GKQVFASLPYPGLVISLFFTTLVIQLcngsIGPILA 236
                 ......344444443333555555554455443333444443 PP

  == domain 2  score: 70.0 bits;  conditional E-value: 5.8e-23
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispse......igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlr 92 
                 l+++++++ l  + +gp+l l++ ++  ++p++      +g+++++ ++ a+++++ lG l+dr+G  r+ll++l + ++++++++f  + +  l  lr
  CTQ26668.1 217 LFFTTLVIQLCNGSIGPILALFI-KS--MAPDSnniaflAGMIAAVPGVSALISAPRLGKLGDRIGTSRILLATLCCAVVMFFAMSF-VTTPlQLGTLR 311
                 68888888899999999998555.44..333333344458999999***********************************555559.566769***** PP

       MFS_1  93 vlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                 +l G++ ga++pa+++l+ ++++++  gr +g+ ++++ lG + gpl+g+ +++ +g+r+vf++ ai+ ++ ++  ++ l++++
  CTQ26668.1 312 FLLGFADGAMLPAVQTLLLKYSSDSVTGRIFGYNQSFMYLGNVAGPLIGASVSAMAGFRWVFIATAIIVFINLWQLAWMLRQTR 395
                 ************************************************************************774445554444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4  13.2     7e-15   2.1e-11      39     212 ..      39     206 ..       9     208 .. 0.86
   2 !   21.0  12.5   4.4e-08   0.00013      46     182 ..     251     381 ..     229     396 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 7e-15
                 HHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHH CS
    Sugar_tr  39 sskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRg 137
                 +s+e++s++sgl++s+++++++i s + g l+dr GRk  ll a++ + i+++lqa+a+   +v++l++ R ++G+  G + + + + +s + p +  g
  CTQ26668.1  39 TSHEALSMWSGLTFSVTFLVSAIVSPMWGSLADRKGRKLMLLRASLGMAIAILLQAFAT---NVWQLFILRAIMGLTSGYIPNAMALVASQV-PRERSG 133
                 5677799****************************************************...************************999998.777778 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCC.HHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHH CS
    Sugar_tr 138 alvslyqlaitfGilvaaifglglnktsnadgwrillglq.lvpallllilllflPESPrylvekgkeeeakevla 212
                    s   +a + G + +  +g +l++  +    r+ ++++ +++++ +l+ l+++ E  r  v+k ++   k+v+a
  CTQ26668.1 134 WALSTLSTAQISGVIGGPLLGGFLADHVG---LRMVFFITaILLTISFLVTLFLIKEGVRPQVSKSERLTGKQVFA 206
                 88888888888999999999999977777...67766666155677778888889999999999998887777765 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 4.4e-08
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyq 144
                  l g+i+++  v a+i++  +g+lgdr+G   +ll++  ++v+  + + + +   +  +l + R+l+G++ G+    v +++ +++ +++ g++ +++q
  CTQ26668.1 251 FLAGMIAAVPGVSALISAPRLGKLGDRIGTSRILLATLCCAVVMFFAMSFVT---TPLQLGTLRFLLGFADGAMLPAVQTLLLKYSSDSVTGRIFGYNQ 346
                 6789************************************************...99****************************************** PP

                 HHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHH CS
    Sugar_tr 145 laitfGilvaaifglglnktsnadgwrillglqlvpal 182
                 +++ +G + +  +g+ ++ + +   +r+ +  ++++  
  CTQ26668.1 347 SFMYLGNVAGPLIGASVSAMAG---FRWVFIATAIIVF 381
                 *****************99999...8887776666543 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6  22.7   1.9e-13   5.8e-10       9     383 ..      16     373 ..       8     375 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 1.9e-13
  MFS_1_like   9 FfffaalgsllPYltiylkskglkase.....igiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklevsva 102
                 Ff   a++ +lP+l +y ++ g++ +e     +g+  ++  l+s + +p+wg laDr g++  ++++sl ++++++l  +                   
  CTQ26668.1  16 FFTGLAISQILPFLPLYVSQLGVTSHEalsmwSGLTFSVTFLVSAIVSPMWGSLADRKGRKLMLLRASLGMAIAILLQAF------------------- 95 
                 5555689*****************9985555579999***********************99999999998888877544................... PP

  MFS_1_like 103 qdvdaektfwilfllvvlasfflaailvlldaatlkelgedrkdyGrqrlfGs.vGyaifafitGili.dhysvnllpysallyvlaallvisllvvli 199
                       +++w lf+l++++  ++++ ++ + a++  ++  +r  ++   l  + ++ +i  +++G ++ dh+       ++++++ a+ll+is+lv l 
  CTQ26668.1  96 -----ATNVWQLFILRAIMG-LTSGYIPNAMALVASQVPRERSGWALSTLSTAqISGVIGGPLLGGFLaDHVGL-----RMVFFITAILLTISFLVTLF 183
                 .....89*********9986.67888999999999999999999998888766477666666665443155555.....55899************666 PP

  MFS_1_like 200 lnetekesklkvtksl.....qvllnilknpeviifllvalilgmswgiienFlflYLkel....gasntllGslvalgvvaeiplfffaeklleklGh 289
                 l +    +++   ks+     qv+  +     vi +++++l+++ ++g i+  l l++k++    +   +l+G++ a+  v+ ++      kl +++G 
  CTQ26668.1 184 LIKEGVRPQVS--KSErltgkQVFASLPYPGLVISLFFTTLVIQLCNGSIGPILALFIKSMapdsNNIAFLAGMIAAVPGVSALISAPRLGKLGDRIGT 280
                 65554444443..3334467577777777778999***********************76522115556899999999999999999999********* PP

  MFS_1_like 290 vklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaiflF 383
                 +++l+++l   ++ f+ +++++ +  +  + +L g++ g++  a+ +   k  ++s+ +++ g  ++++  lG+  G liG  +  + + +++F
  CTQ26668.1 281 SRILLATLCCAVVMFFAMSFVTTPLQLGTLRFLLGFADGAMLPAVQTLLLKYSSDSVTGRIFGYNQSFM-YLGNVAGPLIGASVSAMAGFRWVF 373
                 ***************************************************************888885.599999999997777777777777 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7  16.8   2.4e-09   7.2e-06      60     304 ..      61     301 ..      38     322 .. 0.78
   2 !    7.3   1.3   0.00045       1.4     153     195 ..     354     396 ..     334     399 .] 0.88

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.4e-09
       MFS_3  60 llsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAl 158
                 ++s + G laD    Rk++l   +l ++ ++ll  +a    +++w l +l  ++g+ +    P   A v  +v+r+    A    s         GP l
  CTQ26668.1  61 IVSPMWGSLADRKG-RKLMLLRASLGMAIAILLQAFA----TNVWQLFILRAIMGLTSG-YIPNAMALVASQVPRERSGWALSTLSTAQISGVIGGPLL 153
                 45556799999866.6778877888888888888776....68************9766.68999***********98877766665544455669*** PP

       MFS_3 159 gGvlvaavGaalafavnal.sylalivallrwkrevrksslprEklle.alraglRftaasreikavlvRaalFglsasavlaLLPlvard.qldgdal 254
                 gG l   vG  ++f ++a+   +  +v+l  +k  vr++   +E+l++  + a+l +  +  +    +  + +  l   ++  +L l ++    d++ +
  CTQ26668.1 154 GGFLADHVGLRMVFFITAIlLTISFLVTLFLIKEGVRPQVSKSERLTGkQVFASLPYPGLVIS---LFFTTLVIQLCNGSIGPILALFIKSmAPDSNNI 249
                 ***********999988761578899********************86279999999876544...456677888999999999998887625688877 PP

       MFS_3 255 vy..GillgalGvGAilgalllsrLRerlsserlvllaavalAlvll.slala 304
                 ++  G++ +  Gv A+++a  l +L +r++++r++ la++ +A+v++ +++++
  CTQ26668.1 250 AFlaGMIAAVPGVSALISAPRLGKLGDRIGTSRIL-LATLCCAVVMFfAMSFV 301
                 76546666666**********************86.57777887775155554 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00045
       MFS_3 153 svGPAlgGvlvaavGaalafavnalsylalivallrwkrevrk 195
                  +GP +g  + a++G  ++f ++a+  ++ ++ l+++ r+ r+
  CTQ26668.1 354 VAGPLIGASVSAMAGFRWVFIATAIIVFINLWQLAWMLRQTRR 396
                 68*********************************99988775 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1  13.7   0.00024      0.71     194     362 ..       9     181 ..       1     182 [. 0.73
   2 !   13.5   9.1   1.1e-05     0.032      39     174 ..     249     396 ..     230     399 .] 0.67

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00024
       MFS_4 194 lalllaYglaGfGYiitatFlvaiardgaggalleallWl......lvGlaaivgvlvwlrvakrsglrralaaallieavgvllsllspsplglivss 286
                 + +    ++ G++   +  Fl++++ + +  +  +  +W+       + ++aiv++ +w  +a+r+g + +l  a l  a+++ll    + +  l +  
  CTQ26668.1   9 ISVWFGCFFTGLAISQILPFLPLYVSQLGVTSHEALSMWSgltfsvTFLVSAIVSP-MWGSLADRKGRKLMLLRASLGMAIAILLQAFATNVWQLFILR 106
                 3333344445555555678******9977777667778863211112233444444.5899999999999999999999******************** PP

       MFS_4 287 vllGltflaitalvlqlarelappat.rrllglmTasfgigQilGpllasllaeatgslalallvaaaalvlaaliv 362
                  ++Glt  + ++ +++l+  ++p ++   +l+ + ++   g i Gpll + la+  g l ++ ++ a +l ++ l++
  CTQ26668.1 107 AIMGLT-SGYIPNAMALVASQVPRERsGWALSTLSTAQISGVIGGPLLGGFLADHVG-LRMVFFITAILLTISFLVT 181
                 ****98.5888999***9999998763344444444555688999999999999876.88999999****9999886 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.1e-05
       MFS_4  39 lGYLvGallaafalsagae..Rlr...........llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrervgallfa 124
                 + +L+G ++a+ + sa  +  Rl+           lla l+ +v++++am++++  + +  +Rfl+G a +++l ++ +l l+ ++++  +r+ +   +
  CTQ26668.1 249 IAFLAGMIAAVPGVSALISapRLGklgdrigtsriLLATLCCAVVMFFAMSFVTTPLQLGTLRFLLGFADGAMLPAVQTLLLKYSSDSVTGRIFGYNQS 347
                 445555555554444433211443455555577779999999999*************************************99888777777655555 PP

       MFS_4 125 GvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraal 174
                    lG +++ l + + + + ++  ++ +a+a++ ++ l  +a++l+++++
  CTQ26668.1 348 FMYLGNVAGPL-IGASVSAMAGFRWVFIATAIIVFINLWQLAWMLRQTRR 396
                 55555333332.23333344445555667777777777777777774333 PP

>> PGG  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.1   0.00043       1.3      61     114 ..      47     100 ..      42     102 .. 0.84
   2 ?    1.5   0.3     0.086   2.6e+02      54      80 ..     165     193 ..     155     225 .. 0.61
   3 ?    1.9   0.4     0.062   1.9e+02      59     114 ..     246     300 ..     245     305 .. 0.51

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00043
         PGG  61 aiAlvaSlvvvvlllisslvedeakslpkklrvllvllvlsllsllvaFaagly 114
                 +  l++S++ +v  ++s ++ + a ++ +kl++l ++l ++++ ll aFa+ ++
  CTQ26668.1  47 WSGLTFSVTFLVSAIVSPMWGSLADRKGRKLMLLRASLGMAIAILLQAFATNVW 100
                 556888999999999886667778888999********************9876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.086
         PGG  54 kvFvisnaiAlvaSlvvvvlllissl...v 80 
                 +vF+i+ ai l++S++v+++l+  ++   v
  CTQ26668.1 165 MVFFIT-AILLTISFLVTLFLIKEGVrpqV 193
                 455554.56688899998888833553332 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.062
         PGG  59 snaiAlvaSlvvvvlllissl.vedeakslpkklrvllvllvlsllsllvaFaagly 114
                 sn iA++a +++ v  +++ l  + +  +l  ++     +l++ l + +v F+a ++
  CTQ26668.1 246 SNNIAFLAGMIAAVPGVSA-LiSAPRLGKLGDRIGTS-RILLATLCCAVVMFFAMSF 300
                 5788888888888877733.32334444444433333.3333334444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       857  (0.0477997); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 2930.35
//
Query:       CTQ26669.1  [L=86]
Description: hypothetical protein CH1034_130120 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-32  110.3   3.7    5.6e-32  110.2   3.7    1.0  1  Anti-adapt_IraP  Sigma-S stabilisation anti-adaptor protein
    9.8e-05   22.8   0.4     0.0068   16.8   0.0    2.0  2  HsbA             Hydrophobic surface binding protein A
  ------ inclusion threshold ------
      0.025   14.9   2.0      0.035   14.4   2.0    1.3  1  kleA_kleC        Uncharacterized KorC regulated protein A
      0.047   13.7   1.8       0.05   13.6   1.3    1.4  1  DUF2594          Protein of unknown function (DUF2594)


Domain annotation for each model (and alignments):
>> Anti-adapt_IraP  Sigma-S stabilisation anti-adaptor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   3.7   1.2e-35   5.6e-32       1      86 []       1      85 [.       1      85 [. 0.99

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 1.2e-35
  Anti-adapt_IraP  1 MknlilelLvklakkeeeskeLtaqVealelllsallltlskekvqeliesvekainsalessdevlksdaeLLlkqinrllsvar 86
                     Mknli+elLvkla+keee+keLt+qVeale++++all++++++ +q li+++e+ai++++++   v+++da+LL++++++ll+++r
       CTQ26669.1  1 MKNLIAELLVKLAQKEEEAKELTVQVEALEIVVTALLRHMEHDAQQALIQDIEQAIDQVTPC-PPVNDHDAMLLQQYLKKLLRHPR 85
                     **************************************************************.*********************98 PP

>> HsbA  Hydrophobic surface binding protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.1     0.009        40      60      84 ..      16      40 ..      12      42 .. 0.91
   2 !   16.8   0.0   1.5e-06    0.0068      35      73 ..      42      80 ..      41      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.009
                HHHHHHHHHHHHHCHHHHHHHHHHH CS
        HsbA 60 deealalaqavqtLepdvkaaldal 84
                +eea++l+ +v++Le  v+a+l ++
  CTQ26669.1 16 EEEAKELTVQVEALEIVVTALLRHM 40
                79*******************9876 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.5e-06
                HHHHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHHC CS
        HsbA 35 lsasnalvsaikkattdaqasapltdeealalaqavqtL 73
                ++a +al+++i++a++++  ++p++d +a  l+q++++L
  CTQ26669.1 42 HDAQQALIQDIEQAIDQVTPCPPVNDHDAMLLQQYLKKL 80
                6799******************************99876 PP

>> kleA_kleC  Uncharacterized KorC regulated protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   2.0   7.8e-06     0.035      25      70 ..      11      55 ..       3      60 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.8e-06
   kleA_kleC 25 kiAaklaeAeeLvrqaeeLRakvyeesaaLedrakkrWtleeveqA 70
                k+A+k +eA+eL+ q+e+L + v      +e +a++   ++++eqA
  CTQ26669.1 11 KLAQKEEEAKELTVQVEALEIVVTALLRHMEHDAQQA-LIQDIEQA 55
                79********************999999999998665.68999998 PP

>> DUF2594  Protein of unknown function (DUF2594)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.3   1.1e-05      0.05       8      53 ..      15      60 ..      10      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
     DUF2594  8 tsedtetLaeEvaClKalltllLkalGqAdAGkviinmEkyiaele 53
                 +e++++L+  v  l +++t lL+ +       +i ++E++i++++
  CTQ26669.1 15 KEEEAKELTVQVEALEIVVTALLRHMEHDAQQALIQDIEQAIDQVT 60
                578999********************87555567778******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1447  (0.0807072); expected 358.6 (0.02)
Passed bias filter:                      755  (0.0421105); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 697.66
//
Query:       CTQ26670.1  [L=471]
Description: bacterial alkaline phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.1e-140  467.8   4.7   4.2e-131  437.7   1.8    2.1  2  Alk_phosphatase  Alkaline phosphatase
    5.3e-08   32.5   0.1    2.6e-07   30.3   0.1    2.0  1  Metalloenzyme    Metalloenzyme superfamily
     0.0033   16.9   1.0       0.23   10.8   0.0    3.2  3  Sulfatase        Sulfatase
  ------ inclusion threshold ------
      0.058   13.0   0.1      0.076   12.6   0.1    1.5  1  Phosphodiest     Type I phosphodiesterase / nucleotide pyroph
        1.2    9.3   5.1       0.23   11.5   0.8    2.1  2  PT-VENN          Pre-toxin domain with VENN motif


Domain annotation for each model (and alignments):
>> Alk_phosphatase  Alkaline phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.7   1.8  1.2e-134  4.2e-131       1     348 [.      64     431 ..      64     433 .. 0.98
   2 !   32.3   0.1   1.4e-11   4.9e-08     376     416 .]     430     470 ..     429     470 .. 0.94

  Alignments for each domain:
  == domain 1  score: 437.7 bits;  conditional E-value: 1.2e-134
                      -SEEEEEEETT-SHHHHHHHHHHHCHCTCSSSTTS.TTGGG-SEEEEEESSECSTT......SSGHHHHHHHHHHSSBTBTT-BSB-TTST-B- CS
  Alk_phosphatase   1 aknvilligDGmgvstvtaaRslkeqakdklgeetllamdrfplvglsktyavdkq......vtDSaataTAyacgvktyngaigvdaaagkev 88 
                      aknvilligDGmg+s++taaR+++e+a + +     + +d++pl+g++++y+ dk+      vtDSaa+aTA+++gvktynga+gvd + ++ +
       CTQ26670.1  64 AKNVILLIGDGMGDSEITAARNYAEGAGGFF-----KGIDALPLTGQYTHYSLDKKtgkpdyVTDSAASATAWTTGVKTYNGALGVDIH-ENAH 151
                      7*****************************9.....9****************************************************.**** PP

                      --HHHHHHHTT-EEEEEEEEETTSHHHHTTTTTBSSTTSSSHHH....STCCCHH.TTS-SHHHHHHHCST-SEEEEESCGGGSBCSBCTSSTC CS
  Alk_phosphatase  89 ksvleaAkkaGkstGlVtTtritdAtPaalvahvesRkwkedaa....vpaeale.egkkdiaeqlikakkidvllGGGrkeffpaeyatdGer 177
                      +++le Ak+aG +tG+V+T++++dAtPaalvahv+sRk+++++     +p++ale +gk++i+eql++a + dv+lGGG+k+f  ae+at+Ge+
       CTQ26670.1 152 QTILELAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPTVtsekCPSNALEkGGKGSITEQLLNA-RPDVTLGGGAKTF--AETATAGEW 242
                      *****************************************9877888*******99************.*************..********* PP

                      CT.SBHHHHHCCTTCEEE-SHHHHHHHCTST.SSCEEEESSSSSCS-CCCSCTCCE.....................--HHHHHHHHHHHHTTS CS
  Alk_phosphatase 178 kdGrnlieeakkkgyqyvsdrkeLlkakeen.vkplLGLFadgdlkveldrdeatd.....................PsLkemtevAiklLskn 249
                      ++ ++l+e+a+++gyq+v+d+++L++a+e++  kplLGLFadg+++v++++++a +                     P+L++mte+Ai+lLs+n
       CTQ26670.1 243 QG-KTLREQAQARGYQIVTDAASLAAATEASqDKPLLGLFADGNMPVRWEGPKASYhgnidkppvtctpnpkrdasvPTLAQMTEKAIDLLSRN 335
                      *9.************************9999899************************************************************ PP

                      TT-EEEEEEETCHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHCHHCTTEEEEEEESSEESEEEESTTSTT..TTSEECCEETTTSSEECEEECC CS
  Alk_phosphatase 250 ekGFFLlVEGsrIDhaaHendavgalsEvvefdeAvkaalefakkeketlvvvTaDHshvfsfggyttrgesvlglepllaadkkpvllllYgn 343
                      ekGFFL+VEG++ID+++H+++++g+++E+v++deAv++alefa+k+ +tlv+vTaDH+h++++ + + +   + gl+++l++++++v++++Ygn
       CTQ26670.1 336 EKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQKALEFARKDGNTLVIVTADHAHASQIIPADSK---APGLTQALNTHDGAVMVMSYGN 426
                      ******************************************************************999...********************** PP

                      STT.. CS
  Alk_phosphatase 344 geetk 348
                      +ee++
       CTQ26670.1 427 SEEES 431
                      99865 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 1.4e-11
                      SSHTEE-SSEEEEEESTTGGGGSCEEECCHHHHHHHHHCT- CS
  Alk_phosphatase 376 tseeHtgedvavfAygpkaelvrGvqeqteiakvlaaalel 416
                      +s eHtg +++++Aygp+a++v G+++qt+++ +++aal l
       CTQ26670.1 430 ESMEHTGTQLRIAAYGPHAANVVGLTDQTDLFTTMKAALSL 470
                      5789*********************************9975 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   7.2e-11   2.6e-07     117     216 ..     322     448 ..      65     462 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 7.2e-11
                    HHHHHHHHHHH.CC.-S.EEEEEE-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHTTS-TTTEEE.EEE-SSB--TTTSS................. CS
                    xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.............. RF
  Metalloenzyme 117 vevaekaldailsgkfd.lvvvniknaDmvGHtgdleatiaaieaaDeavkeildaieqvdgil.vvtADHgnaedmvkrdk.............. 196
                     +++eka+d +  ++   ++ v  +  D   H+ ++ ++i    ++Deav++ l+  ++++++l +vtADH  a++++  d               
     CTQ26670.1 322 AQMTEKAIDLLSRNEKGfFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQKALEFARKDGNTLvIVTADHAHASQIIPADSkapgltqalnthdg 417
                    578999999997776667899999***********************************99876268***********98889999*966666666 PP

                    ................-----EEEEEESTT- CS
                    ...........xxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 197 ...........qplTsHtlepVPilivgkgl 216
                               +   +Ht  +  i+ +g++ 
     CTQ26670.1 418 avmvmsygnseEESMEHTGTQLRIAAYGPHA 448
                    6666666666666666666666666666654 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.069   2.5e+02      76      97 ..     145     166 ..      65     220 .. 0.69
   2 ?    2.0   0.0      0.03   1.1e+02      96     177 ..     236     343 ..     234     348 .. 0.62
   3 !   10.8   0.0   6.4e-05      0.23     227     256 ..     370     403 ..     346     468 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.069
                 HHCTTTS-HHHHHHHHTT-EEE CS
   Sulfatase  76 gglpqteatLpellkeaGYnta 97 
                 +   + ++t++el k+aG +t+
  CTQ26670.1 145 DIHENAHQTILELAKAAGLATG 166
                 5566778888888888888884 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.03
                 EEEEEES-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCC.............................TTTTCSHHHHHHHHHHHHH CS
   Sulfatase  96 taaigkwhlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrv.............................ppeggysddrlldealefl 165
                 ta +g w+     +q+  ++rg++ + + ++++aa + +++ +  g  ++                              + +     ++++++a+++ 
  CTQ26670.1 236 TATAGEWQGKTLREQA--QARGYQIVTDAASLAAATEASQDKPLLGLFADGnmpvrwegpkasyhgnidkppvtctpnpkRDASVPTLAQMTEKAIDL- 331
                 6667777777777776..46666666665555555555555555443333355567777777777777777777776443333334447788888888. PP

                 HCCCTSSEEEEE CS
   Sulfatase 166 larndkpfflyl 177
                 l rn+k ffl++
  CTQ26670.1 332 LSRNEKGFFLQV 343
                 688899999976 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 6.4e-05
                 HHHHHHHHTTTGGGEEEEEEESSSSCCCG....H CS
   Sulfatase 227 rvlaaLeenglldntlvvftSDhgaslee....s 256
                  v +aLe + ++ ntlv++t+Dh ++ +     s
  CTQ26670.1 370 AVQKALEFARKDGNTLVIVTADHAHASQIipadS 403
                 567899999**************98773344432 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.1e-05     0.076     171     236 ..     336     396 ..     103     451 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
                   SSESEEEEEECCCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EE CS
  Phosphodiest 171 ekpdlllvyleetDtvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDHGmad 236
                   ek  +l v   ++D++ H   p+      +  ++D+a+++ le ++++   ++t +i+++DH  a+
    CTQ26670.1 336 EKGFFLQVEGASIDKQDHAANPCG--QIGETVDLDEAVQKALEFARKD---GNTLVIVTADHAHAS 396
                   666666677777777777776654..3456679***************...99*********8876 PP

>> PT-VENN  Pre-toxin domain with VENN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.8   6.5e-05      0.23       9      43 ..     151     185 ..     145     186 .. 0.92
   2 ?   -3.4   0.2       2.9     1e+04      10      21 ..     257     268 ..     257     271 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.5e-05
     PT-VENN   9 KqtvsalstlaaGlaGgvvggtladavaGaeagen 43 
                  qt++ l+++a+ ++G+v    l+da  +a ++++
  CTQ26670.1 151 HQTILELAKAAGLATGNVSTAELQDATPAALVAHV 185
                 69****************************99987 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.9
     PT-VENN  10 qtvsalstlaaG 21 
                 q v+ +++laa+
  CTQ26670.1 257 QIVTDAASLAAA 268
                 557777888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3528.38
//
Query:       CTQ26671.1  [L=105]
Description: phosphate starvation-inducible protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.8e-35  119.1  18.6      1e-17   63.7   6.5    2.2  2  PsiF_repeat  psiF repeat
  ------ inclusion threshold ------
      0.021   15.1   0.3      0.049   13.9   0.0    1.6  2  GPR15L       G-protein coupled receptor ligand 15


Domain annotation for each model (and alignments):
>> PsiF_repeat  psiF repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   6.5   1.1e-21     1e-17       1      34 []      26      59 ..      26      59 .. 0.98
   2 !   61.5   4.2   5.4e-21   4.8e-17       2      34 .]      71     103 ..      70     103 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 1.1e-21
  PsiF_repeat  1 ltaQQeKMktCNaeAkakaLkGdeRKaFMssCLs 34
                 +t+QQ++M++CN++A+ak+LkG+eRK+FMs+CL+
   CTQ26671.1 26 PTPQQQRMTDCNQQASAKMLKGEERKTFMSQCLK 59
                 69*******************************8 PP

  == domain 2  score: 61.5 bits;  conditional E-value: 5.4e-21
  PsiF_repeat   2 taQQeKMktCNaeAkakaLkGdeRKaFMssCLs 34 
                  t+QQ+KM++C+++A+ak+LkGdeR +FMssCL+
   CTQ26671.1  71 TPQQQKMSDCSKAATAKSLKGDERSTFMSSCLK 103
                  9*******************************8 PP

>> GPR15L  G-protein coupled receptor ligand 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.5e-06     0.049       8      64 ..       4      59 ..       1      66 [. 0.68
   2 ?   -0.8   0.2       0.2   1.8e+03      35      48 ..      73      87 ..      57     101 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.5e-06
      GPR15L  8 sLlciLllClsvfsaeGrklpakvakerklrpC.CkrvprlkllnlkgrhvrlCrpck 64
                +Ll++Ll+ l ++sa G ++++ +  ++++r+  C++  ++k+l+   r++ + +  k
  CTQ26671.1  4 TLLMTLLFGLIFISAVGAAEKTPT--PQQQRMTdCNQQASAKMLKGEERKTFMSQCLK 59
                69***************6655543..44445445888887888766655555555444 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.2
      GPR15L 35 rklrpC.Ckrvprlk 48
                +++++  C+++ ++k
  CTQ26671.1 73 QQQKMSdCSKAATAK 87
                222322355444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 779.58
//
Query:       CTQ26672.1  [L=269]
Description: pyrroline-5-carboxylate reductase, NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-38  130.7   0.9    4.4e-38  129.7   0.9    1.5  1  P5CR_dimer       Pyrroline-5-carboxylate reductase dimerisati
    8.8e-25   87.1   0.4      2e-24   86.0   0.4    1.6  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    1.1e-08   35.4   0.1    2.7e-08   34.2   0.1    1.7  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
    0.00036   20.8   0.0    0.00069   19.9   0.0    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    0.00094   19.3   0.0      0.011   15.9   0.0    2.3  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
     0.0044   17.8   0.0       0.01   16.7   0.0    1.6  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
  ------ inclusion threshold ------
      0.014   14.4   0.0      0.027   13.4   0.0    1.5  1  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
      0.023   14.3   2.1       0.21   11.2   2.1    2.1  1  ApbA             Ketopantoate reductase PanE/ApbA
      0.041   13.2   0.1        0.1   11.9   0.0    1.6  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.042   13.8   2.4        1.3    9.0   2.4    2.4  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
       0.17   11.9   0.0         13    5.9   0.0    2.5  3  DUF3489          Protein of unknown function (DUF3489)
       0.55   10.1   4.5          2    8.3   0.0    2.7  3  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> P5CR_dimer  Pyrroline-5-carboxylate reductase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.7   0.9     3e-41   4.4e-38       2     103 .]     163     266 ..     162     266 .. 0.96

  Alignments for each domain:
  == domain 1  score: 129.7 bits;  conditional E-value: 3e-41
                 CHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHCHS..HHHHHHHH--TTSHHHHHHHHHHHTTHHHHHHHHHHHHHH CS
  P5CR_dimer   2 kqldavtalsGsgpAyvflliealadagvklGlsreeArelaaqtvaGaaklllese..paelrdkvtspgGtTiaglkeleegglraavieaveaaak 98 
                  +++ v ++sGs+pAyvf++iea+ada+v  G++r++A+++aaq+v+G+ak++les+  p+ l+d+v+spgGtTi+++++lee+g+r+aviea+ ++++
  CTQ26672.1 163 PMIHPVVGVSGSAPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLESGehPGALKDMVCSPGGTTIEAVRVLEEKGFRSAVIEAITQCME 261
                 578899**********************************************9966669**************************************** PP

                 HHHHH CS
  P5CR_dimer  99 rskel 103
                 +s++l
  CTQ26672.1 262 KSEKL 266
                 **986 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.4   1.3e-27     2e-24       1      97 []       4      99 ..       4      99 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 1.3e-27
                   EEEEETTSHHHHHHHHHHHHTTS.-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEEEESSS CS
  F420_oxidored  1 kigiiGaGnmgealasgllaaga.qpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlselakdalkgklvisvlag 97
                   kig+iG+Gnmg+a++ gl+a+g+ qp +i+v  +++p+k+++l++++g+++ + +++e+a+ ad+v+ avkp  +++vl ++a+++ k++lv+s++ag
     CTQ26672.1  4 KIGFIGCGNMGKAILGGLIASGQvQPGQIWVY-TPSPDKVAALRDQYGINAAS-SAQEVAQIADIVFGAVKPGIMTKVLGDIASSLNKESLVVSIAAG 99
                   7*****************************55.********************.******************************************97 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   1.8e-11   2.7e-08       1      89 [.       4      96 ..       4     117 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.8e-11
                   EEEEE--SHHHHHHHHHHHHTT-....EEEEE-SSHHHHHHHHHT.TEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE- CS
  NAD_binding_2  1 kigfiGlGvMGsnmalnllkagy....kvavynrtkekveelvae.gakaaesieelvasldvvitmvkagkavdeviegllealkkgdilidg 89
                   kigfiG G+MG+ +   l+++g+    ++ vy  +++kv +l ++ g++aa+s++e+++ +d+v+  vk g  + +v+ +++++l+k+++++  
     CTQ26672.1  4 KIGFIGCGNMGKAILGGLIASGQvqpgQIWVYTPSPDKVAALRDQyGINAASSAQEVAQIADIVFGAVKPG-IMTKVLGDIASSLNKESLVVSI 96
                   79****************8877555559***************9956*********************987.56789999*******9999865 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.6e-07   0.00069       1      63 [.       5      67 ..       5     109 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.6e-07
                     EEEE--SHHHHHHHHHHHCTCCT-G.EEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHH CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvda.eitvadrskeklealaakalgvrfeaialdaenyeavL 63
                     + +iG+G++G+a++  l ++++v++ +i v ++s +k++al ++  g+++ + a  ++++++++
       CTQ26672.1  5 IGFIGCGNMGKAILGGLIASGQVQPgQIWVYTPSPDKVAALRDQ-YGINAASSAQEVAQIADIV 67
                     678********************99*************999877.8999999999888888765 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     7e-06     0.011      12      84 ..       2      72 ..       1      98 [. 0.84
   2 ?    0.4   0.0      0.41   6.2e+02      17      56 ..     125     164 ..     114     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7e-06
                  T-EEEEES-SHHHHHHHHHHHCC...T-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SS CS
  Shikimate_DH 12 ekkvlliGaGemaelvakhLlak...gvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisata 84
                  +kk+  iG G+m++ ++  L+a+   +  ++ v   + +++++l+++++ +     + ++ +e+ + ad+v+ a++
    CTQ26672.1  2 DKKIGFIGCGNMGKAILGGLIASgqvQPGQIWVYTPSPDKVAALRDQYGIN-----AASSAQEVAQIADIVFGAVK 72
                  6899*****************984334569******************555.....778888899999***98875 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.41
                   EES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH CS
  Shikimate_DH  17 liGaGemaelvakhLlakgvkkvvvaNRtlerakelaeel 56 
                   l+ aG+++       +++ v +v+ + R + +a+++ae +
    CTQ26672.1 125 LVNAGMTSVTPNALVSSEDVAEVLTIFRCFGQAEQIAEPM 164
                   677898888888888888999999999******9999876 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   6.8e-06      0.01       2      67 ..       4      68 ..       3      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.8e-06
                  EEEEETTSHHHHHHHHHHHHTTTTE.EEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEE CS
  GFO_IDH_MocA  2 rvaiiGaGkigskhlrplnesqrle.evvalldpdaeraeavaesfgveaysdleelladpeidavi 67
                  ++++iG+G++g+  l  l +s + +   + ++ p++ +  a+++++g++a s+ +e+++   +d+v+
    CTQ26672.1  4 KIGFIGCGNMGKAILGGLIASGQVQpGQIWVYTPSPDKVAALRDQYGINAASSAQEVAQ--IADIVF 68
                  89*************99*999888895666**************************999..556665 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.8e-05     0.027     131     199 ..       4      69 ..       2      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-05
                      EEEEE--SHHHHHHHHHHCCCS--SEEEEE-SSHHHHHHHHHHCCS.CTT-EEECSCHHHHTTSSEEEE CS
  OCD_Mu_crystall 131 vlaiiGaGvqaetqlealkavldikevriydrdeeaaekfaenlqefefevsackseeeavegadivvt 199
                       +++iG+G + + +l  l+a  +++  +i+  +++  + +a + q     ++a++s++e+++ adiv  
       CTQ26672.1   4 KIGFIGCGNMGKAILGGLIASGQVQPGQIWVYTPSPDKVAALRDQ---YGINAASSAQEVAQIADIVFG 69 
                      5799********************999999999987766665555...69****************975 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.1   0.00014      0.21      24     124 ..      32     119 ..       5     124 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
                 EEEE-SCH.HHHH.HHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEEEEEESSSSCHHHHHTTTSTTSEE CS
        ApbA  24 vtlilrsr.rlea.lkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldpntvvlllqNGlgheeelrealpkprv 120
                 +++++ s+ +++a   + G++  s+               +++ ++ +d+v+ +vK   + ++l +i++ l++++ v+++  G+  e+  r+   ++++
  CTQ26672.1  32 IWVYTPSPdKVAAlRDQYGINAASS---------------AQEVAQIADIVFGAVKPGIMTKVLGDIASSLNKESLVVSIAAGVTLEQLARALGHDRKI 115
                 4444444444444222333333332...............34456678************************************998888887777788 PP

                 EEEE CS
        ApbA 121 lggv 124
                 + ++
  CTQ26672.1 116 IRAM 119
                 7665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     7e-05       0.1      36      99 ..       2      71 ..       1     104 [. 0.82
   2 ?   -2.1   0.0       1.4   2.1e+03     110     127 ..     112     129 ..      84     141 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7e-05
                  TSEEEEES-SHHHHHHHHHHHHTT-....EEEEESSSHHHHH.CHHHHTCEEC.SHHHHHHH-SEEEE-S CS
  2-Hacid_dh_C 36 gktvGiiGlGrIGqavakrlkafgm....kviaydrskkkee.eeeelgvelv.sleellaesDivslhl 99
                  +k++G iG+G++G+a+   l a g     ++ +y +s++k +   +++g++ + s +e+ + +Div+ ++
    CTQ26672.1  2 DKKIGFIGCGNMGKAILGGLIASGQvqpgQIWVYTPSPDKVAaLRDQYGINAAsSAQEVAQIADIVFGAV 71
                  699*************98777666445569*******9988876778888555599*********98766 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.4
                   SHHHHHCSTTTEEEEESS CS
  2-Hacid_dh_C 110 naeelakmkkgailiNta 127
                   +++ +++m+++  l+N++
    CTQ26672.1 112 DRKIIRAMPNTPSLVNAG 129
                   345567777777777776 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.4   0.00085       1.3      56     111 ..      50     105 ..       4     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00085
                     TEEEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--TT-EEEE---SEET.TT CS
  NAD_Gly3P_dh_N  56 nlvattdlaealkgadiivlvvPsqalrevlkklkgllkkkailvsliKGieegtl 111
                      + a +  +e+++ adi++ +v   ++++vl +++  l+k+  +vs++ G+  ++l
      CTQ26672.1  50 GINAASSAQEVAQIADIVFGAVKPGIMTKVLGDIASSLNKESLVVSIAAGVTLEQL 105
                     57899999******************************************955444 PP

>> DUF3489  Protein of unknown function (DUF3489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       8.9   1.3e+04      45      60 ..      44      59 ..      43      61 .. 0.79
   2 ?    3.1   0.0     0.069     1e+02      19      40 ..      97     118 ..      91     120 .. 0.85
   3 ?    5.9   0.0    0.0087        13      12      26 ..     225     239 ..     221     243 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 8.9
     DUF3489 45 alkkklgltltsekve 60
                al++++g++ +s+++e
  CTQ26672.1 44 ALRDQYGINAASSAQE 59
                6888999999888875 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.069
     DUF3489  19 peGatiaeimeatgWqahtvRg 40 
                 ++G+t++++++a+g     +R+
  CTQ26672.1  97 AAGVTLEQLARALGHDRKIIRA 118
                 68************88887776 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0087
     DUF3489  12 lialLrrpeGatiae 26 
                 l +++++p+G+ti++
  CTQ26672.1 225 LKDMVCSPGGTTIEA 239
                 789**********97 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.6     0.092   1.4e+02       1      19 [.       4      22 ..       4      50 .. 0.76
   2 ?    8.3   0.0    0.0013         2      67     140 ..      51     123 ..      46     158 .. 0.80
   3 ?   -1.3   0.0       1.1   1.7e+03      65      91 ..     235     261 ..     195     267 .. 0.57

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.092
                EEEEE--SCCHHHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfa 19
                k++ iG+G mG+ i   ++
  CTQ26672.1  4 KIGFIGCGNMGKAILGGLI 22
                6899********9965554 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0013
                 EEEES-HHHHH.C-SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHCCCSSSGGGEEEEEE-SS CS
     3HCDH_N  67 isfttdleeav.dadlviEavvEnlelKrkvfaelekiakpdailasnTSslsiselaealkrperviglHFfnP 140
                 i+++++ +e++  ad+v+ av   +   +kv+ ++++ +++++++ s + ++ +++la+al +++++i + + +P
  CTQ26672.1  51 INAASSAQEVAqIADIVFGAVKPGIM--TKVLGDIASSLNKESLVVSIAAGVTLEQLARALGHDRKIIRAMPNTP 123
                 56667777777789999999976655..569**********************************9998766666 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.1
                 HCEEEES-HHHHHC-SEEEE-S-SSHH CS
     3HCDH_N  65 arisfttdleeavdadlviEavvEnle 91 
                 ++i++   lee      viEa++  +e
  CTQ26672.1 235 TTIEAVRVLEEKGFRSAVIEAITQCME 261
                 444444445554445556666655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2114.97
//
Query:       CTQ26673.1  [L=152]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-50  167.9   0.0    9.1e-50  167.7   0.0    1.0  1  DUF188    Uncharacterized BCR, YaiI/YqxD family COG1671


Domain annotation for each model (and alignments):
>> DUF188  Uncharacterized BCR, YaiI/YqxD family COG1671
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.7   0.0   5.1e-54   9.1e-50       2     128 ..      18     144 ..      17     146 .. 0.99

  Alignments for each domain:
  == domain 1  score: 167.7 bits;  conditional E-value: 5.1e-54
      DUF188   2 iirvaerlkvevvlvansslrlpssplvetvvVdsgadaaDdaIveraeagDlvvTqDipLAarvlekgaaalsprGevyteenIdellamRdlmkklR 100
                 ++r+aer++++++lvan++lr+p+s++++t+ V++g+d+aD++Iv++++agDlv+T+DipLAa+vl+kg+aal+prGe y+e++I+e+l+mRd+m++lR
  CTQ26673.1  18 LFRAAERTQTPLTLVANQPLRVPPSRFIRTLRVEQGFDVADNEIVRQCAAGDLVITADIPLAAEVLAKGGAALNPRGERYSEATIRERLTMRDFMETLR 116
                 79************************************************************************************************* PP

      DUF188 101 ragertggpkkfskedrsrFakaLdrll 128
                 ++g++tggp ++s++dr++Fa +L+++l
  CTQ26673.1 117 ASGVQTGGPDSLSQRDRQQFAAELEKWL 144
                 **************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1157.65
//
Query:       CTQ26674.1  [L=236]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-70  237.1  14.4    3.8e-70  236.9  14.4    1.0  1  DUF2076          Uncharacterized protein conserved in bacteri
      0.002   17.8   0.4       0.26   10.9   0.1    2.1  2  TauE             Sulfite exporter TauE/SafE
     0.0055   17.1   0.5      0.011   16.2   0.5    1.5  1  NPV_P10          Nucleopolyhedrovirus P10 protein
  ------ inclusion threshold ------
      0.064   13.0   0.3       0.12   12.2   0.3    1.3  1  DivIC            Septum formation initiator
       0.11   12.9   0.2       0.23   11.9   0.2    1.7  1  RTBV_P12         Rice tungro bacilliform virus P12 protein
       0.16   12.6   2.3       0.68   10.5   0.2    2.4  2  Adaptin_binding  Alpha and gamma adaptin binding protein p34


Domain annotation for each model (and alignments):
>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.9  14.4   1.3e-73   3.8e-70       1     257 [.       1     233 [.       1     235 [. 0.82

  Alignments for each domain:
  == domain 1  score: 236.9 bits;  conditional E-value: 1.3e-73
     DUF2076   1 MtpeErqLidgLfdRlkqaesq..prDaeAealIaqalrkqPaApYylaQtvlvqeaaLkqanariqeLeaqlqqlqqqaqeaqaqpssggFLsglFGg 97 
                 M++eE++LidgLf+Rlk+ae++  +rDa Ae+ Iaq++++qPaApYy+aQt+l+qeaa+kq+n+riq+Le+q+ q       ++a+pssggFLsglFGg
  CTQ26674.1   1 MQSEEQRLIDGLFSRLKEAEAHsaSRDASAEERIAQHVSAQPAAPYYMAQTILIQEAAIKQLNDRIQALESQVSQ------LQAAKPSSGGFLSGLFGG 93 
                 *******************99988*************************************************43......4567899*********** PP

     DUF2076  98 gkkerpqpspqarpaapagqalgqeeqyaaqpgyaqqqaqpqygqpaaapqpggGggFLggAlqtAAGVaGGvllangleslfsgksgeegaasasqsa 196
                 g ++r +++ + ++++   q       ++aqp+y +   +pq++++  ++ +++GggF++gAlqtAAGVaGGv+l+n+l+++fsg          s+++
  CTQ26674.1  94 GGSSRGSDPIPGAEQYGRPQ-------ASAQPQYTP---PPQQNYA--PQAAARGGGFMAGALQTAAGVAGGVVLGNMLTNMFSG----------SHPQ 170
                 **993333322222222222.......223333333...3332222..22346788*****************************..........779* PP

     DUF2076 197 eeeeiinnyy..ssssladdaedadnasadsfadsdsssdnnadaasdddsdddssddgggDD 257
                 e+++ii++++  ++ s++d+++++++a++d+f+++d++  +++ +++d+d +  ++d+g++DD
  CTQ26674.1 171 EIVNIIEEKPqpDAASAQDSIAQDTTAGDDPFRQGDDQFLADNTWNDDFDAGFGDDDFGSDDD 233
                 *********99999999************************9999977777666665555555 PP

>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0042        12     135     146 ..      84      95 ..      46      98 .. 0.80
   2 !   10.9   0.1   8.8e-05      0.26       4      34 ..     137     170 ..     121     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0042
        TauE 135 vGllsGllGiGg 146
                 +G+lsGl+G+Gg
  CTQ26674.1  84 GGFLSGLFGGGG 95 
                 677777777776 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 8.8e-05
        TauE   4 agllaGfvagllGiGggliavPlLllll...ppa 34 
                  g++aG+++ ++G++gg+++  +L+ ++   +p+
  CTQ26674.1 137 GGFMAGALQTAAGVAGGVVLGNMLTNMFsgsHPQ 170
                 5899999999999999999999988865455333 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.5   3.6e-06     0.011       1      35 [.      48      81 ..      48      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.6e-06
     NPV_P10  1 MSqniLlvIradikavddkVdalqqqvddvqenlp 35
                M+q iL++  a+ik+++d+++al++qv ++q+  p
  CTQ26674.1 48 MAQTILIQ-EAAIKQLNDRIQALESQVSQLQAAKP 81
                89999998.79*******************99766 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   3.9e-05      0.12      23      51 ..      49      77 ..      43      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.9e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC 23 kqeiaalqaelaklkaeneeLeaevkdLk 51
                 q i  ++a +++l++++++Le++v++L+
  CTQ26674.1 49 AQTILIQEAAIKQLNDRIQALESQVSQLQ 77
                6788899*******************995 PP

>> RTBV_P12  Rice tungro bacilliform virus P12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   7.8e-05      0.23      36      81 ..      39      84 ..       9     128 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.8e-05
    RTBV_P12 36 niksaadvnlaskglvqlyalqeidkkinnlttqvsklpttsgsss 81
                  + aa   +a   l+q  a+++++ +i+ l +qvs+l ++  ss 
  CTQ26674.1 39 SAQPAAPYYMAQTILIQEAAIKQLNDRIQALESQVSQLQAAKPSSG 84
                456688899999**************************99877664 PP

>> Adaptin_binding  Alpha and gamma adaptin binding protein p34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00023      0.68      76     102 ..      32      82 ..       3      85 .. 0.64
   2 ?    1.4   0.2      0.15   4.6e+02      52      77 ..     113     174 ..     106     231 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00023
  Adaptin_binding  76 f........................lfggdeaarledlesllsklqqakdn 102
                      +                           ++ ++r++ les++s+lq+ak +
       CTQ26674.1  32 EriaqhvsaqpaapyymaqtiliqeAAIKQLNDRIQALESQVSQLQAAKPS 82 
                      123444444555556666778777755566678***************976 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.15
  Adaptin_binding  52 qdpsqpastepdksaaesesadaef....................................l 77 
                      q+  qp+ t+p++++ ++++a+ ++                                    +
       CTQ26674.1 113 QASAQPQYTPPPQQNYAPQAAARGGgfmagalqtaagvaggvvlgnmltnmfsgshpqeivN 174
                      55667777777777777776655545555554444444444444444444444444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      741  (0.0413297); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 1624.89
//
Query:       CTQ26675.1  [L=24]
Description: hypothetical protein CH1034_130126 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (24 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       190  (0.0105974); expected 358.6 (0.02)
Passed bias filter:                      127  (0.0070835); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.24s 00:00:00.53 Elapsed: 00:00:00.38
# Mc/sec: 191.05
//
Query:       CTQ26676.1  [L=177]
Description: shikimate kinase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-43  148.4   0.0      2e-43  148.2   0.0    1.0  1  SKI              Shikimate kinase
    1.3e-07   32.2   0.0    2.9e-07   31.1   0.0    1.6  1  AAA_18           AAA domain
    0.00024   21.5   0.2    0.00068   20.1   0.2    1.8  1  AAA_16           AAA ATPase domain
    0.00036   20.7   0.1     0.0011   19.2   0.1    1.8  1  AAA_33           AAA domain
    0.00054   20.4   0.0     0.0014   19.1   0.0    1.7  2  AAA              ATPase family associated with various cellul
     0.0018   18.0   0.0     0.0031   17.3   0.0    1.4  1  AAA_24           AAA domain
      0.004   17.2   0.0     0.0078   16.2   0.0    1.5  1  AAA_14           AAA domain
     0.0052   17.1   0.1      0.011   16.0   0.1    1.8  1  AAA_22           AAA domain
     0.0052   17.0   0.1      0.015   15.6   0.0    1.8  2  AAA_28           AAA domain
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.014   15.4   0.0    1.4  1  AAA_5            AAA domain (dynein-related subfamily)
      0.018   14.8   0.0      0.089   12.5   0.0    2.0  2  Cytidylate_kin   Cytidylate kinase
      0.024   15.0   0.0      0.095   13.1   0.0    1.8  2  RNA_helicase     RNA helicase
      0.026   14.6   0.0       0.04   14.0   0.0    1.3  1  Sigma54_activ_2  Sigma-54 interaction domain
      0.038   13.7   0.0      0.085   12.6   0.0    1.6  1  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.076   12.9   0.0       0.11   12.4   0.0    1.2  1  Rad17            Rad17 P-loop domain
      0.081   13.4   0.0       0.14   12.7   0.0    1.6  1  ABC_tran         ABC transporter
        0.1   12.7   0.1       0.23   11.6   0.1    1.9  1  Cytidylate_kin2  Cytidylate kinase-like family
       0.16   11.9   0.0       0.22   11.4   0.0    1.4  1  ATPase_2         ATPase domain predominantly from Archaea
        0.2   11.5   0.0        5.6    6.8   0.0    2.2  2  dNK              Deoxynucleoside kinase


Domain annotation for each model (and alignments):
>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.2   0.0   2.2e-46     2e-43       1     157 [.      11     168 ..      11     169 .. 0.97

  Alignments for each domain:
  == domain 1  score: 148.2 bits;  conditional E-value: 2.2e-46
                 TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHH CS
         SKI   1 mGaGKstvGkllAkklglefiDlDeliekrtgksiaeifeeegeegFrelEsevlkelleeeglViatGGGavlseenrellkekgiviyLdvsleell 99 
                 +G+GK+tvG++lA++ +++f D+D+ ++ ++++++aei++ eg+++FrelE+  lk+++   + ViatGGG+vl e nr++++e+g+viyL++s+ +l+
  CTQ26676.1  11 RGCGKTTVGHALARARHFQFSDTDHRLQAHEQRTVAEIVQAEGWARFRELETLSLKAVTLP-NTVIATGGGIVLAEGNRQFMRENGVVIYLQASVSALI 108
                 7**********************************************************99.9************************************ PP

                 HHHHHTTS...SGGGCSCHHHHHHHHHHHHHHHHHCCSSCEEEECTSSHHHHHHHHHHHHH CS
         SKI 100 erlkadke...RPllqekskeeelleelaereplyeeaadvvvdeseeskeevaeeileal 157
                 +rl+a ++   RP+l++k  +ee+ e la+re+ly++aa+++vd++ ++ ++v+e+i+++l
  CTQ26676.1 109 DRLEAYPKaeqRPTLTGKPVREEVGEVLAQREALYRDAAHHIVDATASP-DRVVEQIMSML 168
                 ***98887788**************************************.9******9876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   3.1e-10   2.9e-07       1     121 [.       5     122 ..       5     141 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 3.1e-10
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...gvnlrdvakenglllevdpe.aldeskrldedkldklldaleenssaleegknlvidghlaeleseaakdik 95 
                 I+l G+ G+GKtt++++L++  +f    + +r  a e +++ e  ++  + ++++l++    k++++ +  +   + g+ +v+     ++  e+ +   
  CTQ26676.1   5 IFLIGPRGCGKTTVGHALARARHFqfsDTDHRLQAHEQRTVAEIVQAeGWARFRELETLS-LKAVTLPNTVI---ATGGGIVLAEGNRQFMRENGVV-- 97 
                 99****************998766668666666677777777777775555555555555.44444444443...3578888888888887776663.. PP

      AAA_18  96 kvvLtaspeelleRlekRgyeeakik 121
                  ++L+as + l++Rle+  + e +++
  CTQ26676.1  98 -IYLQASVSALIDRLEAYPKAEQRPT 122
                 .***************9888877765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   7.2e-07   0.00068      26      88 ..       4      63 ..       1     176 [. 0.60

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 7.2e-07
      AAA_16 26 lvllsGesGvGKsslvrellralekdggiflrgkcdql...esaipysalaqalareellrqllde 88
                 ++l+G++G+GK+++  +l+r   ++++ f   ++d+    +++++ + ++qa  +   +r+l++ 
  CTQ26676.1  4 PIFLIGPRGCGKTTVGHALAR---ARHFQF--SDTDHRlqaHEQRTVAEIVQAEGW-ARFRELETL 63
                589*************99997...333344..333333112222333335555544.455544444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   1.1e-06    0.0011       2      33 ..       5      81 ..       5     172 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.1e-06
      AAA_33  2 vllvGlpGsGKstlaerllkklgavllssdt.............................................l 33
                ++l+G+ G+GK+t+ + l++++++++ ++d                                              +
  CTQ26676.1  5 IFLIGPRGCGKTTVGHALARARHFQFSDTDHrlqaheqrtvaeivqaegwarfreletlslkavtlpntviatgggI 81
                689*************************9994444444444444444444444444444444444444444444440 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.5e-06    0.0014       2      27 ..       6      31 ..       5      70 .. 0.81
   2 ?   -1.4   0.0         3   2.9e+03     103     118 ..     148     163 ..      89     171 .. 0.58

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.5e-06
                EEESSTTSSHHHHHHHHHHHHTHEEE CS
         AAA  2 llyGppGtGKTllakavakelgvefl 27
                 l+Gp G+GKT++ +a+a+  +++f 
  CTQ26676.1  6 FLIGPRGCGKTTVGHALARARHFQFS 31
                79****************99666654 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3
                 EEEEEEESSGGGSTHH CS
         AAA 103 vivigatnrpdkldpa 118
                   ++ at +pd++ ++
  CTQ26676.1 148 HHIVDATASPDRVVEQ 163
                 3444455555554444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.3e-06    0.0031       4      54 ..       4      59 ..       1      80 [. 0.86

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.3e-06
      AAA_24  4 kiliyGpsgiGKTtlakel..gpkplfidtekGlksldadkfpdie...swedfld 54
                 i+++Gp g GKTt+   l    ++ f dt++ l++ + + + +i    +w+ f++
  CTQ26676.1  4 PIFLIGPRGCGKTTVGHALarARHFQFSDTDHRLQAHEQRTVAEIVqaeGWARFRE 59
                589************99998889999999999998888887777767778888887 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.3e-06    0.0078       3      34 ..       3      29 ..       2      63 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.3e-06
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesil 34
                +++++ G+R +GKTt+ + l++ +      + 
  CTQ26676.1  3 QPIFLIGPRGCGKTTVGHALARARH-----FQ 29
                5789************999997766.....22 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.2e-05     0.011       8      43 ..       5      45 ..       2     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee.....erpevv 43
                ++++G+ G+GKTt+   l++  + + + ++     ++ ++v
  CTQ26676.1  5 IFLIGPRGCGKTTVGHALARARHFQFSDTDhrlqaHEQRTV 45
                89*****************9987655555577776444444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.6e-05     0.015       2      24 ..       5      28 ..       4      71 .. 0.67
   2 ?   -1.4   0.0       2.5   2.4e+03      26      54 ..     128     155 ..     105     175 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.6e-05
      AAA_28  2 ivitGgestGKTtlleaLaar.gy 24
                i ++G+ ++GKTt+  aLa+   +
  CTQ26676.1  5 IFLIGPRGCGKTTVGHALARArHF 28
                789****************54222 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.5
      AAA_28  26 vvpEaareileeklakgedalpwvedlla 54 
                 v +E++  +  ++ a  +da+++  d+ a
  CTQ26676.1 128 VREEVGEVLA-QREALYRDAAHHIVDATA 155
                 4444443333.333333333333234444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   1.5e-05     0.014       2      42 ..       5      49 ..       4      86 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-05
                EEEE--SSSSHHHHHHHGGGGB....S--EEEEE--TT--HHHHH CS
       AAA_5  2 vlLvGppGtgKselaerlaaal....nreveyvqltrdtteedlk 42
                ++L+Gp G+gK+++   la+a      ++ +  q +++ t ++++
  CTQ26676.1  5 IFLIGPRGCGKTTVGHALARARhfqfSDTDHRLQAHEQRTVAEIV 49
                89****************998755555555556666666666665 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.5e-05     0.089       4      31 ..       8      35 ..       5      77 .. 0.78
   2 ?    0.4   0.0      0.49   4.7e+02     129     146 ..      93     110 ..      56     168 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.5e-05
                    E-STTSSHHHHHHHHHHHHT-EEEEHHH CS
  Cytidylate_kin  4 DGPagsGKssvaralaeklglkyldtga 31
                     GP g GK +v++ala+   +++ dt +
      CTQ26676.1  8 IGPRGCGKTTVGHALARARHFQFSDTDH 35
                    5***********************9976 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.49
                     T-SEEEEEE--HHHHHHH CS
  Cytidylate_kin 129 daelKifldAsveeRakR 146
                     +  + i+l+Asv + + R
      CTQ26676.1  93 ENGVVIYLQASVSALIDR 110
                     555667777777665555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0    0.0001     0.095       1      23 [.       5      27 ..       5      59 .. 0.81
   2 ?   -0.5   0.0       1.7   1.6e+03      53      80 ..     142     171 ..     103     176 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0001
  RNA_helicase  1 iwlyGpsgeGKStlakeLakall 23
                  i+l Gp+g+GK+t+ + La+a  
    CTQ26676.1  5 IFLIGPRGCGKTTVGHALARARH 27
                  7899*************999765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.7
  RNA_helicase  53 vvidDfgqvkdee.nps.dlaelirlvsst 80 
                   +  d    ++d + +p+  +++++ +  s+
    CTQ26676.1 142 LYRDAAHHIVDATaSPDrVVEQIMSMLCSA 171
                   444444444444445554555555554444 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.2e-05      0.04      21      59 ..       2      40 ..       1      73 [. 0.71

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.2e-05
                     SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH CS
  Sigma54_activ_2 21 klpvfltGekGsgkelvArlLhknsgpwleifvverlak 59
                     + p+fl+G+ G+gk++v  +L+  +  + + ++   +a+
       CTQ26676.1  2 TQPIFLIGPRGCGKTTVGHALARARHFQFSDTDHRLQAH 40
                     57*******************998877666555533333 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     9e-05     0.085       3      30 ..       4      32 ..       2      46 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9e-05
   PduV-EutP  3 killiGkvgsGKttLtqalkg.eelkYkk 30
                 i+liG+ g+GKtt+ +al   ++++++ 
  CTQ26676.1  4 PIFLIGPRGCGKTTVGHALARaRHFQFSD 32
                599*************9997524555555 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00012      0.11      49      74 ..       6      31 ..       2      50 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
       Rad17 49 LisGPsGCgkstvvkvLskelgiklr 74
                 + GP GCgk+tv + L++   +++ 
  CTQ26676.1  6 FLIGPRGCGKTTVGHALARARHFQFS 31
                567**************998877765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00015      0.14      14      36 ..       5      27 ..       2     116 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00015
                EEEEESTTSSHHHHHHHHTTSS- CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllk 36
                + ++G+ G+GK+t+  +la+  +
  CTQ26676.1  5 IFLIGPRGCGKTTVGHALARARH 27
                689***********999998765 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00024      0.23       9      42 ..      12      45 ..       7     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
  Cytidylate_kin2  9 GsgGetigeaLAekLglpfydreiieevakelgl 42
                     G+g++t+g+aLA   +++f d +   ++ ++  +
       CTQ26676.1 12 GCGKTTVGHALARARHFQFSDTDHRLQAHEQRTV 45
                     9********************9876666665555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00024      0.22      21      39 ..       3      21 ..       1      70 [. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
    ATPase_2 21 eiyfiYGpegsGKtaLlke 39
                +++f+ Gp+g+GKt++   
  CTQ26676.1  3 QPIFLIGPRGCGKTTVGHA 21
                799***********98555 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0059       5.6       4      26 ..       8      30 ..       5      52 .. 0.84
   2 ?    2.6   0.0      0.11     1e+02     123     142 ..      94     113 ..      82     124 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0059
                EESTTSSHHHHHHHHHCCSTCEE CS
         dNK  4 eGnIgaGKstlvklLskklgvkv 26
                 G+ g+GK+t+ + L+++  +++
  CTQ26676.1  8 IGPRGCGKTTVGHALARARHFQF 30
                5888************9988775 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.11
                 -SEEEEEE--HHHHHHHHHH CS
         dNK 123 pdlliYLkasletclerikk 142
                   ++iYL+as+  +  r++ 
  CTQ26676.1  94 NGVVIYLQASVSALIDRLEA 113
                 5689************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1344.83
//
Query:       CTQ26677.1  [L=63]
Description: hypothetical protein CH1034_130128 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-38  129.0   2.5    5.3e-38  128.9   2.5    1.0  1  YaiA      YaiA protein


Domain annotation for each model (and alignments):
>> YaiA  YaiA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   2.5   2.9e-42   5.3e-38       1      63 []       1      63 []       1      63 [] 0.99

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 2.9e-42
        YaiA  1 maskPPYPReakivtvekGtagktvtwYeLRaDhPkPdtLiseheteqealDaktRYeDedke 63
                m+ +PPYPRea++v vekG+ g+tvtwY+LRaD+P+Pd+Liseh+teqea+Dak RYeD+dk+
  CTQ26677.1  1 MPNRPPYPREARVVAVEKGPQGQTVTWYQLRADYPEPDSLISEHPTEQEAVDAKRRYEDPDKS 63
                9************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 517.00
//
Query:       CTQ26678.1  [L=226]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-70  234.5   0.6    9.6e-70  234.4   0.6    1.0  1  AroM      AroM protein


Domain annotation for each model (and alignments):
>> AroM  AroM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.4   0.6   5.3e-74   9.6e-70       1     218 []       6     225 ..       6     225 .. 0.99

  Alignments for each domain:
  == domain 1  score: 234.4 bits;  conditional E-value: 5.3e-74
        AroM   1 lglvTiGqsPrtdvtpeleeilgpeveiveaGaLDglseeei.aalapeegeavlvsrlrdGesvvlskekveprlqaaiakleeegvdlilllcTgef 98 
                 ++++TiG++P + v+p l+e++ +e +i ++++L++++++e+ a++a+ +ge+ l+++l++++ v++s++k+e+++++aia l+++++d+illl+++++
  CTQ26678.1   6 MAILTIGVVPLAGVLPLLTEHI-REEQIAHISLLGEMTPDEVmAEYAVGDGEKGLLTLLSNNQLVMVSRQKIERDVRSAIAMLDRQHYDVILLLSSEQL 103
                 689*******************.999************************************************************************* PP

        AroM  99 pelea.kapliepqrileslvaalvkkkqlgvivPleeqaeqaekkweelakevvvavaspy.gseeelaeaarelaeqgadlivldciGYteemkaav 195
                 + +++ +a+l+epqri+++lva++v+++q+gvivP+ee ++++++kw +l+k++++a+a+p+ gs++el +a+++l eqgad++vldc+GY +++++++
  CTQ26678.1 104 TGFTThHAILLEPQRIIPPLVASIVDGHQVGVIVPVEEIMPMQRQKWLSLEKSPYYALANPFtGSDSELLTAGKTLLEQGADVLVLDCLGYYQHHRDVL 202
                 ****99********************************************************************************************* PP

        AroM 196 aealgkpVllarslvarllaell 218
                 ++al++pVll+++lv+rl+aell
  CTQ26678.1 203 QKALDVPVLLSNVLVSRLAAELL 225
                 *********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1723.92
//
Query:       CTQ26679.1  [L=94]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-37  126.0   0.1    6.2e-37  125.9   0.1    1.0  1  Ppnp      Pyrimidine/purine nucleoside phosphorylase
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.019   14.7   0.0    1.1  1  EutQ      Ethanolamine utilisation protein EutQ


Domain annotation for each model (and alignments):
>> Ppnp  Pyrimidine/purine nucleoside phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   0.1   6.9e-41   6.2e-37       2      92 .]       3      93 ..       2      93 .. 0.99

  Alignments for each domain:
  == domain 1  score: 125.9 bits;  conditional E-value: 6.9e-41
                CEEEECCCTEEEEEEEETTSEEEEEEEE-SECEEEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS-EEEEEEE CS
        Ppnp  2 kanvyfdgkvksravefadgskktvGvmlpgeyeFgtsakEvmevvsGelevklpgeeewktykagesFevpanssFelkvkeataYlCsy 92
                ++n+yfdgkvks++++++++ +++vGvm++gey+Fgt+++E m+vvsG+l+v lpge+ewk y+age F+vp+ns+F+l+v+e+t+YlC+y
  CTQ26679.1  3 QSNEYFDGKVKSIGFTSSSTGRASVGVMAEGEYTFGTAQPEEMTVVSGALNVLLPGETEWKVYAAGEVFNVPGNSEFHLQVAEPTSYLCRY 93
                78***************************************************************************************99 PP

>> EutQ  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.2e-06     0.019      69     141 ..      17      89 ..       5      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.2e-06
        EutQ  69 vtleeskrlgaGlmemkettfdwtlnydeidyvieGrldvlidGrk..vvaeaGdviliPkgskiefsvtdeakf 141
                 +t   + r ++G+m   e tf  t + +e+  v+ G l+vl  G +   v  aG+v  +P +s+ ++ v++ + +
  CTQ26679.1  17 FTSSSTGRASVGVMAEGEYTFG-TAQPEEM-TVVSGALNVLLPGETewKVYAAGEVFNVPGNSEFHLQVAEPTSY 89 
                 6778888999999999999997.5566676.689*********998334678*************9999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 757.95
//
Query:       CTQ26680.1  [L=303]
Description: DNA-binding protein, non-specific [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.6e-127  422.3   2.7   1.1e-126  422.1   2.7    1.0  1  RdgC      Putative exonuclease, RdgC
  ------ inclusion threshold ------
        6.9    7.6  11.0       0.59   10.9   2.1    3.4  3  M         M protein repeat


Domain annotation for each model (and alignments):
>> RdgC  Putative exonuclease, RdgC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  422.1   2.7  1.2e-130  1.1e-126       1     298 []       2     300 ..       2     300 .. 1.00

  Alignments for each domain:
  == domain 1  score: 422.1 bits;  conditional E-value: 1.2e-130
        RdgC   1 mwFknlliYrltkelelsaeeLeeaLaeaafkpcgsqdmsslGWvsplgeeee.lvhavngqlllalkkeeklLPasVvkeeleekveeieeeegrkvg 98 
                 +wFknl++Yrl++++el aee+e++Lae +f+pcgsqdm+++GWvsp+g+++  l+h++ngq++++++keek+LP+ V+k++le+k++++e+++grk++
  CTQ26680.1   2 LWFKNLMVYRLSRDIELRAEEMEKQLAELTFTPCGSQDMAKTGWVSPMGSHSVaLTHTANGQIIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLK 100
                 7************************************************************************************************** PP

        RdgC  99 rkekkelkeevveeLLPrAFsksrktaawidtengllvvdaaSakkaeevlslLrkslgslpvkplqteqspeaamteWlasgeapagftldeeceLks 197
                 ++ek++lk+ev+++LLPrAFs++++t++widt+ngl++vd aSakkae++l+lLrk+lgslpv+pl++e+++e ++teW++sg++ +gf+l +e+eLk+
  CTQ26680.1 101 KTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKTLGSLPVVPLTLENPIELTLTEWVRSGTVAQGFQLLDEAELKA 199
                 *************************************************************************************************** PP

        RdgC 198 aeeekavvrckrqdlesdeirahleaGkvvtkLaLtwedrisfvLtedlslkrlkflDvlkeqadeiekedaaerfdadfaLmtgeLseliedLlealg 296
                 + e+++v+r k+qdl sdei+ h+eaGkvvtkLaL+w++ri+fv+ +d+s+krlkf D+l++q+++i++ed a+rfdadf+LmtgeL+ li++L+e lg
  CTQ26680.1 200 MLEDGGVIRAKKQDLVSDEIAVHIEAGKVVTKLALDWQQRIQFVICDDASIKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQSLVEGLG 298
                 *************************************************************************************************** PP

        RdgC 297 ge 298
                 ge
  CTQ26680.1 299 GE 300
                 96 PP

>> M  M protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.6      0.24   2.1e+03       5      14 ..      22      31 ..      21      31 .. 0.83
   2 ?   10.9   2.1   6.6e-05      0.59       3      17 ..      81      95 ..      81      95 .. 0.95
   3 ?   -1.7   0.0      0.83   7.4e+03       8      14 ..     209     215 ..     208     217 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.24
           M  5 eLEaelqeLe 14
                e E++l+eL+
  CTQ26680.1 22 EMEKQLAELT 31
                569*****97 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6.6e-05
           M  3 kkeLEaelqeLeeel 17
                k++LEa+ q+Le+++
  CTQ26680.1 81 KQALEAKIQKLEADQ 95
                9***********986 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.83
           M   8 aelqeLe 14 
                 a++q+L 
  CTQ26680.1 209 AKKQDLV 215
                 7888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2311.48
//
Query:       CTQ26681.1  [L=304]
Description: manno(fructo)kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-95  319.8   0.1    2.1e-95  319.6   0.1    1.0  1  ROK             ROK family
    2.2e-10   40.0   0.3    7.6e-10   38.3   0.3    1.9  2  Glucokinase     Glucokinase
    3.4e-06   26.8   0.2      0.014   14.9   0.1    2.2  2  BcrAD_BadFG     BadF/BadG/BcrA/BcrD ATPase family
    0.00033   20.4   1.1    0.00036   20.3   0.1    1.5  2  Hydant_A_N      Hydantoinase/oxoprolinase N-terminal region
     0.0029   17.5   0.0     0.0056   16.6   0.0    1.5  2  DEDD_Tnp_IS110  Transposase
     0.0069   15.1   0.0     0.0095   14.7   0.0    1.1  1  Acetate_kinase  Acetokinase family
  ------ inclusion threshold ------
       0.14   12.3   0.5       0.55   10.3   0.0    2.0  2  baeRF_family2   Bacterial archaeo-eukaryotic release factor f


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.6   0.1   8.2e-99   2.1e-95       2     292 ..       3     300 ..       2     302 .. 0.99

  Alignments for each domain:
  == domain 1  score: 319.6 bits;  conditional E-value: 8.2e-99
                 EEEEE-SSEEEEEEEETTS-EEEEEEEEEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCC.CCTTHHHHHHHHHTS- CS
         ROK   2 igidiGgtkialalvdeegeilarekvetptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitw.enfdlvekleerlnvp 99 
                 igid+Ggtk++++ + ++ge+l r++++tp+e++++t+ ++ia+lv++ e+++++ ++vg+g+pG i + ++++v+++n+tw + ++++++l+ rl+++
  CTQ26681.1   3 IGIDLGGTKTEVIALSDQGEQLFRHRLPTPREDYRQTI-ETIATLVAMVEQATGQQGTVGMGIPGSI-SPYTGVVKNANSTWlNGQPFDKDLSLRLERE 99 
                 8*************************************.****************************.99***************************** PP

                 EEEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-.........TTS-B-TTS-BSBHHHCCSHHHHHHCHT CS
         ROK 100 vevenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqld.........pegekcgCGnqgClEtlasgralekraq 189
                 v+++nD+n++a++Eav+ga++++++v++v++gtG+GaGv++ng++++G nG+age+GH++l          + ++ c+CG+qgC+Et++sg++++ ++q
  CTQ26681.1 100 VRLANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVALNGRAHIGGNGNAGEWGHNPLPwmnddelryRAEVPCYCGKQGCIETFISGTGFATDYQ 198
                 *********************************************************************9989999*********************** PP

                 C.CGTTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHHHHHHHHHHHCCTTTTCCCT-EEEE-S-STTHHHHHH CS
         ROK 190 q.kgekleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadklleairklvkkylnkklevpvveivaaklgdkagllGa 287
                 + +g++l+++ei++l+ +gde+ae ++ r++++lak++a+++n++dp++ivlgGg+s++++l++++  lvk+++++++++++  i++a +gd++g++Ga
  CTQ26681.1 199 RlSGKGLTGSEIMRLVGEGDEKAELALSRYEQRLAKSLAHVVNILDPDVIVLGGGMSNVERLYQTVPDLVKQWVFGGECETP--IRKAMHGDSSGVRGA 295
                 *9********************************************************************************..9************** PP

                 HHHHC CS
         ROK 288 aaLak 292
                 a+L+ 
  CTQ26681.1 296 AWLWP 300
                 ***95 PP

>> Glucokinase  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.3     3e-13   7.6e-10       4     206 ..       6     204 ..       3     254 .. 0.83
   2 ?   -0.4   0.0      0.18   4.5e+02     153     204 ..     212     263 ..     205     272 .. 0.78

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 3e-13
  Glucokinase   4 DiGGTkarlalveaeeeelelleiekyasadyasleealqaflaeaeaevkrpksavlAvAgpve..gdeveltNlpWviseeelakelgle...ave 96 
                  D+GGTk+ +  +++++e+   ++    + +dy +  e +++ +a +e++  +  ++ +++ g ++   + v+ +N +W ++ + + k+l+l+   +v+
   CTQ26681.1   6 DLGGTKTEVIALSDQGEQ-LFRHRLPTPREDYRQTIETIATLVAMVEQATGQQGTVGMGIPGSISpyTGVVKNANSTW-LNGQPFDKDLSLRlerEVR 101
                  9********999999999.6777778899***************99999999899*********844577899999**.68899999999977789** PP

  Glucokinase  97 liNDfeavayaiplleaedlvqlgggkkdaeapiavlGaGTGLGvallipekerrvvlasEGGhvdfapeseeevelleilrkkl.grvsaErvlSGp 193
                  l ND +++a++ ++ +a+        +  ++   +++G G G Gval  +++ +    a+E Gh  ++ +++ e ++ + +     ++  +E ++SG+
   CTQ26681.1 102 LANDANCLAVSEAVDGAA--------AGAQTVFAVIIGTGCGAGVALNGRAHIGGNGNAGEWGHNPLPWMNDDELRYRAEVPCYCgKQGCIETFISGT 191
                  ****99999886665543........33445678899*************999999**********************9999999677899******* PP

  Glucokinase 194 GLvnlyealaaad 206
                  G ++ y+ l+ + 
   CTQ26681.1 192 GFATDYQRLSGKG 204
                  ***9999887765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.18
  Glucokinase 153 vlasEGGhvdfapeseeevelleilrkklgrvsaErvlSGpGLvnlyealaa 204
                   l +EG   +  + s+ e +l++ l++ ++ +  + ++ G G++n+ +  ++
   CTQ26681.1 212 RLVGEGDEKAELALSRYEQRLAKSLAHVVNILDPDVIVLGGGMSNVERLYQT 263
                  5677777666566678899999999999999999*********998776655 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   5.5e-06     0.014       1      26 [.       3      28 ..       3     157 .. 0.71
   2 !   10.2   0.0   0.00015      0.39     184     263 ..     214     295 ..     203     298 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.5e-06
                 EEEEE-SSEEEEEEEETTTEEEEEEE CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlgrgi 26
                 +GiD+G+T+t ++ + ++ge l r  
   CTQ26681.1  3 IGIDLGGTKTEVIALSDQGEQLFRHR 28
                 7******************9555443 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00015
                  HHHTT--HHHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH.....HHHH-S-....EE--GGGGGHHHHHH CS
  BcrAD_BadFG 184 alsggekaedIlaglhraialrvialisrsggvtdevtltGGvakneaavkelrklvkenygevk....ininpdsiytgalGA 263
                    +g+ekae  l    + +a++++ +++ ++     ++l GG+++ e +++++ +lvk+ + + +    i    + +  g+ GA
   CTQ26681.1 214 VGEGDEKAELALSRYEQRLAKSLAHVVNILDPD--VIVLGGGMSNVERLYQTVPDLVKQWVFGGEcetpIRKAMHGDSSGVRGA 295
                  55799*******************999998766..7**********************99877650011444445555566666 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   1.4e-07   0.00036       1      59 [.       2      59 ..       2      64 .. 0.80
   2 ?   -3.6   0.1       3.1     8e+03     122     155 ..      95     128 ..      93     130 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.4e-07
  Hydant_A_N  1 rigIDvGGTfTDavaldekeeevavlKllstpdavaegirealeevleesiprtskidv 59
                rigID GGT T ++al+++ e++  ++l++ +++  + i ++   v+  +++ t++  +
  CTQ26681.1  2 RIGIDLGGTKTEVIALSDQGEQLFRHRLPTPREDYRQTIETIATLVAMVEQA-TGQQGT 59
                79***************999***********999988888887777555444.555444 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.1
  Hydant_A_N 122 rveadgevlkpldeeevrealkalkaagvesiav 155
                 r+e +++  ++ ++ +v ea+  + a   + +av
  CTQ26681.1  95 RLEREVRLANDANCLAVSEAVDGAAAGAQTVFAV 128
                 5666677777777777777777776655555555 PP

>> DEDD_Tnp_IS110  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.2e-06    0.0056       1      58 [.       3      60 ..       3      81 .. 0.76
   2 ?   -3.9   0.0       4.4   1.1e+04     128     144 ..     225     241 ..     224     243 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.2e-06
  DEDD_Tnp_IS110  1 vGiDvakdkhdacvidaegkvllservpndeeglealleklaakagevlvvveatghy 58
                    +GiD + +k ++ +++++g++l+++r+p+ +e+ ++ +e +a     v+ + ++ g+ 
      CTQ26681.1  3 IGIDLGGTKTEVIALSDQGEQLFRHRLPTPREDYRQTIETIATLVAMVEQATGQQGTV 60
                    7****************************99888777777665555555444444443 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4.4
  DEDD_Tnp_IS110 128 ltrqredlvkertrlkn 144
                     l+r+ + l+k+++ + n
      CTQ26681.1 225 LSRYEQRLAKSLAHVVN 241
                     78899999888877666 PP

>> Acetate_kinase  Acetokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.7e-06    0.0095     285     333 ..     210     256 ..     201     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.7e-06
  Acetate_kinase 285 vedaaeegdeeaelalkvyvhrlakyigeyaavlegkvDaivFTgGige 333
                     ++  + egde+aelal  y +rlak +++ ++ l+   D iv  gG+++
      CTQ26681.1 210 IMRLVGEGDEKAELALSRYEQRLAKSLAHVVNILD--PDVIVLGGGMSN 256
                     6666789***************************7..8********875 PP

>> baeRF_family2  Bacterial archaeo-eukaryotic release factor family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2      0.77     2e+03      48      80 ..      96     128 ..      92     131 .. 0.72
   2 ?   10.3   0.0   0.00021      0.55      53     103 ..     222     272 ..     215     278 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.77
  baeRF_family2  48 yqrraeeswerNaeavAeevdrlvresgaelVv 80 
                     +r +  + + N+ av e+vd +++  +  + v
     CTQ26681.1  96 LEREVRLANDANCLAVSEAVDGAAAGAQTVFAV 128
                    566666677889999999999998776655555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00021
  baeRF_family2  53 eeswerNaeavAeevdrlvresgaelVvlaGDvrarsllrdeLpervrelv 103
                    e +  r  ++ A+ ++++v   +++++vl G +  ++ l + +p+ v++ v
     CTQ26681.1 222 ELALSRYEQRLAKSLAHVVNILDPDVIVLGGGMSNVERLYQTVPDLVKQWV 272
                    55566666789********************************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2301.04
//
Query:       CTQ26682.1  [L=1045]
Description: exonuclease, dsDNA, ATP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.5e-16   57.8   0.6    5.1e-15   55.5   0.6    2.4  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
    2.6e-13   51.0  90.1      0.067   13.7  90.2    6.2  1  AAA_23       AAA domain
    3.1e-11   43.2   0.0    6.8e-05   22.4   0.0    3.3  2  SMC_N        RecF/RecN/SMC N terminal domain
    1.3e-07   31.2   0.0    3.5e-07   29.8   0.0    1.7  1  AAA_29       P-loop containing region of AAA domain
     0.0037   17.0   0.3       0.03   14.0   0.0    2.5  2  AAA_15       AAA ATPase domain
     0.0062   17.1   0.0     0.0062   17.1   0.0    6.2  1  ABC_tran     ABC transporter
  ------ inclusion threshold ------
       0.01   15.7   0.0      0.024   14.5   0.0    1.6  1  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
      0.051   13.2   0.7       0.16   11.5   0.0    2.3  2  cobW         CobW/HypB/UreG, nucleotide-binding domain
      0.071   13.0   0.1        1.1    9.2   0.0    3.0  2  RsgA_GTPase  RsgA GTPase
      0.078   13.1   0.1       0.77    9.9   0.0    2.8  2  MMR_HSR1     50S ribosome-binding GTPase
      0.098   12.6   0.2       0.53   10.2   0.0    2.3  2  NTPase_1     NTPase
       0.24   12.0   1.8        5.5    7.6   0.0    3.6  3  AAA_18       AAA domain
       0.33   11.2   0.0       0.33   11.2   0.0    5.7  4  AAA_22       AAA domain
       0.43   10.8   0.0       0.43   10.8   0.0    5.7  3  AAA_28       AAA domain
       0.49   10.0   0.0       0.49   10.0   0.0    3.9  6  AAA_25       AAA domain
       0.57   10.6   2.8         24    5.3   0.0    3.5  3  AAA          ATPase family associated with various cellular a


Domain annotation for each model (and alignments):
>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.6   4.5e-18   5.1e-15      11      89 ..     928     999 ..     918    1000 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 4.5e-18
     SbcCD_C  11 sfevevrdedgkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                  +e+ev+  d ++ +  r+++tlSGGe+ fl++lala+al++l+s+    +++++++fLDE+F++lD+e+++t+l++l+
  CTQ26682.1 928 ALELEVV--DTWQADAVRDTRTLSGGES-FLVSLALALALSDLVSH----KTRIDSLFLDEGFGTLDSETLDTALDALD 999
                 5666777..78888899***********.*****************....79************************986 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7  90.2     6e-05     0.067       1     195 [.       5     262 ..       5     876 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6e-05
      AAA_23   1 kLkienfrsf.rdqeidF......skgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkay.veltfenkdgrytrsie 91 
                 +L+++n++s+ ++++idF      s+gl++ItG +GaGKTT+ldAi+laLy+etprl++ s+    ++d      ++++++ +e++fe k+    ++  
  CTQ26682.1   5 SLRLKNLNSLkGEWKIDFtaepfaSNGLFAITGATGAGKTTLLDAICLALYHETPRLNKVSQ---SQNDLMT---RDTAEClAEVEFEVKGIA--YRAF 95 
                 69********6679*******************************************99764...6677763...366677799999998886..6888 PP

      AAA_23  92 rerelskkkgkttkkaklellei...........deleqfisellgskkiilnlilflgqerfeefelkdkke.......................... 153
                 +++++++++ +   +a + +l             +++ +++ +l g ++ +++++ +l q++f+ f+++++++                          
  CTQ26682.1  96 WSQNRARNQPDGNLQAPRVELARcadgkiladkvSDKLEQTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPSDraelleeltgteiygqisamvyeqhk 194
                 99999999999998886666666555533332443333444446666666******************99999999999******************** PP

      AAA_23 154 ......................rleelekeleeledekkllekl....eqekekekeleeleeeleei 195
                                       + ++l+++l+ l+de+k l ++    +q++++  + +el ++++++
  CTQ26682.1 195 aarhalekfeaqaagivllteaQQQALQESLQVLTDEEKALLAQqqsqQQQLQWLTRRDELAQQQQQA 262
                 *9999999999999999999996666666666666555433333233355555555666666666654 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.1e-05     0.023       4      58 ..       5      64 ..       2     102 .. 0.64
   2 !   22.4   0.0   6.1e-08   6.8e-05     135     213 ..     422    1029 ..     146    1033 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.1e-05
                EEEEESETTEECEEEE....EET.TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTC CS
                xxxxxxxxxxxxxxxx....xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  4 rleienFksyagktvi....lpf.sksftaivGpNGSGKsnlldAilFvLGersakklrs 58
                +l+++n  s++g+ +i     pf s+++ ai+G+ G+GK+ lldAi+  L +++ +  + 
  CTQ26682.1  5 SLRLKNLNSLKGEWKIdftaEPFaSNGLFAITGATGAGKTTLLDAICLALYHETPRLNKV 64
                566777777765533311112331457889****************88887655543333 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 6.1e-08
                  T................................................................................................ CS
                  x................................................................................................ RF
       SMC_N  135 e................................................................................................ 135 
                                                                                                                   
  CTQ26682.1  422 Rslrqrlislheqhqllrkrlrqnaesvqqaqaeqvklnatltlrreqykdknqhyldlkalcqreetikdlesyrdrleagkpcplcgacehpaie 518 
                  0444444444455555555555555555555555555555555555555555555555555555555555555555555577777777777777777 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CTQ26682.1  519 qyasltltdnqrrrdalekevaalkeegllilgqvkaltqqlqrdteaagrlaeeeqaltkawqetcaslhitrdiaqeindwmqeqeryeqqlyql 615 
                  7777777777777777777777777777777777777777777777777777777777777777788888888888888888888888888888888 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CTQ26682.1  616 sqrlmlqsqindqqalerqaeqqlaatrqglesalqalalslpaegteaawlharesefaqwqaqqtrhdaiqqqiaalrplletlptsdeteveae 712 
                  8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CTQ26682.1  713 saipdnwreiheeclslhsqlvaqqqqetqekarldqsqaqftsalaasrfsdreaflaallddetaqrltqlkqtleqqlqqaaalceqatrqhea 809 
                  8888888888888888888888888888888888888888888888888888888888888888888888888888888888889999999999999 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CTQ26682.1  810 hlalrpqgvdadvptlqtqlhalaqrlrdnttrqgeirqqlrqdaesrqqqqalgqqiaeaaqladdwgylnsligsstgdrfrkfaqgltldnlvw 906 
                  999999999999************************************************************************************* PP

                  ........................................CS-HHHHHHHHHHHHHH.....HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHC CS
                  ........................................xxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 ........................................lLSgGektLvalaLlfA.....iqkvkpaplyllDeidaaLDeknvkkvaellkeks 187 
                                                          +LSgGe  Lv+laL +A      +k +  +l +lDe    LD +      + l++ +
  CTQ26682.1  907 lanqqlnrlhgryllqrkasealelevvdtwqadavrdtrTLSGGESFLVSLALALAlsdlvSHKTRIDSL-FLDEGFGTLDSETLDTALDALDALN 1002
                  *********************************************************88885555555555.58********************999 PP

                  TTSEEE.EE-SSHHHCCC-SCEEEEEE CS
                  xxxxxx.xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  188 knaQfi.vislreemlekadklvgvtk 213 
                   +  +i vis+ e m  +    ++v+k
  CTQ26682.1 1003 ASGKIIgVISHVEAMKDRIPVQIKVKK 1029
                  998888899999999888877777765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   3.2e-10   3.5e-07      18      60 ..      26      67 ..      17      68 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 3.2e-10
      AAA_29 18 eidlkgatlltGpsGsGKSTllDAiqalLvpakkvrfNkaane 60
                ++  +g + +tG++G+GK+TllDAi   L+ ++  r Nk +++
  CTQ26682.1 26 PFASNGLFAITGATGAGKTTLLDAICLALYHET-PRLNKVSQS 67
                57778999***********************99.999999986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.7e-05      0.03       1      44 [.       1      51 [.       1      89 [. 0.91
   2 ?   -0.8   0.2      0.86   9.7e+02     200     256 ..     443     500 ..     405     519 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
      AAA_15  1 MkIkkikikNFRslkd.veidlsee......ltvliGkNnsGKSsileald 44
                MkI ++++kN  slk   +id+  e      l  + G+ ++GK+++l+a+ 
  CTQ26682.1  1 MKILSLRLKNLNSLKGeWKIDFTAEpfasngLFAITGATGAGKTTLLDAIC 51
                ***************99********************************95 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.86
      AAA_15 200 isakRnvsd.edsekkssllgklkekileealqekleeelteklkeiqeklkeidkkl 256
                  ++  +v++ + +++k ++  +l ++ +++++q +l+++  ++ +e+ ++l+   + l
  CTQ26682.1 443 RQNAESVQQaQAEQVKLNATLTLRREQYKDKNQHYLDLKALCQREETIKDLESYRDRL 500
                 4444444444666777788888888888888888888788887777777777665555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   5.5e-06    0.0062      13      66 ..      32      82 ..      25     160 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.5e-06
                EEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-S CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpq 66
                + ai+G +GaGK+tLl +++  l  +  ++   +k +++q+   +r   ++l +
  CTQ26682.1 32 LFAITGATGAGKTTLLDAICLALYHETPRL---NKVSQSQNDLMTRDTAECLAE 82
                679****************98777665555...344444444444444444444 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.1e-05     0.024       2      35 ..      33      63 ..      32      77 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.1e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltde 35
                 +++G+ g+GK++LLda+ l+   + + +++ ++
  CTQ26682.1 33 FAITGATGAGKTTLLDAICLA---LYHETPRLNK 63
                68****************444...5565555555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00015      0.16       4      22 ..      34      54 ..      32      89 .. 0.79
   2 ?   -3.5   0.3       5.9   6.6e+03     128     156 ..     230     258 ..     180     275 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
                EEEESTTCCHHHHHHHHH..C CS
        cobW  4 vltGflGsGKTtLlnhll..e 22
                 +tG  G+GKTtLl +++   
  CTQ26682.1 34 AITGATGAGKTTLLDAIClaL 54
                69*************999651 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.9
                 HCCHHHHHHHHHHTSSEEEEE-HHHHCHC CS
        cobW 128 eekieekaedqlaaadllvlnKtDlldee 156
                 +e+++ +a++q +   l  l+  D l ++
  CTQ26682.1 230 DEEKALLAQQQSQQQQLQWLTRRDELAQQ 258
                 34444445555555555555555555444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00097       1.1      99     132 ..      30      66 ..      14      79 .. 0.76
   2 ?   -1.0   0.2       1.3   1.4e+03      36      74 ..     232     271 ..     201     305 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00097
                  TSEEEEECSTTSSHHHHHHHHCTT-...----S---- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpel...elktgevse 132
                  + + ++ G +G+GK+tL++a+   l   + + ++vs+
   CTQ26682.1  30 NGLFAITGATGAGKTTLLDAICLALyheTPRLNKVSQ 66 
                  467899*************998754111444455555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
                  HHHHHHHHHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHH CS
  RsgA_GTPase  36 drfLvlaeekgiepvivlnKiDlleeee.eleelkeelea 74 
                  +++L++ ++++ + +  l++ D l +++ ++ + +++ ++
   CTQ26682.1 232 EKALLAQQQSQQQQLQWLTRRDELAQQQqQAATRQQQARQ 271
                  5777888888888888888888777766433333333333 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00069      0.77       3      36 ..      34      76 ..      32      92 .. 0.68
   2 ?   -2.2   0.1       3.8   4.3e+03      68     100 ..     201     227 ..     177     252 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00069
                EEEESTTSSHHHHHHHHHT.........STEEESSSTTSSSSE CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg.........ekaivsdkpgtTrdi 36
                ai G + +GK+tL+ a++          +k+  s+    Trd+
  CTQ26682.1 34 AITGATGAGKTTLLDAICLalyhetprlNKVSQSQNDLMTRDT 76
                89***************95333333322244444555566665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.8
                 HHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHH CS
    MMR_HSR1  68 kaflaleeadlillvvdaseeklkpldeeleel 100
                 ++f+a  +a  i+l+ +a+++ l++      ++
  CTQ26682.1 201 EKFEA--QAAGIVLLTEAQQQALQES----LQV 227
                 22222..4678888888663322222....222 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00047      0.53       2      24 ..      33      55 ..      32      62 .. 0.87
   2 ?   -1.8   0.0       2.2   2.5e+03     109     136 ..     216     243 ..     170     302 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00047
                EEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellk 24
                ++iTG  G GKtTl++ ++ +l 
  CTQ26682.1 33 FAITGATGAGKTTLLDAICLALY 55
                58**************9998775 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.2
                 GG-HHHHHHHHHHHTTTSEEEEE--SS- CS
    NTPase_1 109 lkskkfkeaveevLksekpvlavihrrk 136
                  + + ++e+++ + ++ek +la  + ++
  CTQ26682.1 216 AQQQALQESLQVLTDEEKALLAQQQSQQ 243
                 3333333333333334443333333332 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0049       5.5       3      18 ..      35      50 ..      34     103 .. 0.83
   2 ?   -2.6   0.2       6.9   7.8e+03      97     115 ..     429     447 ..     408     474 .. 0.65
   3 ?    1.3   0.1      0.41   4.6e+02      97     122 ..     823     852 ..     727     862 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0049
      AAA_18  3 ltGtpGvGKttlakeL 18
                +tG+ G+GKttl +++
  CTQ26682.1 35 ITGATGAGKTTLLDAI 50
                9***********9887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.9
      AAA_18  97 vvLtaspeelleRlekRgy 115
                 + L+   + l++Rl++  +
  CTQ26682.1 429 ISLHEQHQLLRKRLRQNAE 447
                 6666666666666666543 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.41
      AAA_18  97 vvLtaspeelleRlekRgyeeakik....e 122
                   L++  + l++Rl++  +++ +i+     
  CTQ26682.1 823 PTLQTQLHALAQRLRDNTTRQGEIRqqlrQ 852
                 57999999********99999998755541 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00029      0.33       5      29 ..      30      54 ..      28     103 .. 0.79
   2 ?   -2.6   0.1       5.7   6.3e+03      80      99 ..     214     232 ..     174     263 .. 0.49
   3 ?   -3.0   4.8         7   7.9e+03      54     103 ..     386     437 ..     254     465 .. 0.71
   4 ?   -0.9   1.3       1.6   1.8e+03      23      90 ..     554     620 ..     530     650 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00029
      AAA_22  5 agilvvtGesGtGKTtllrrlleql 29
                 g+ ++tG +G+GKTtll  +   l
  CTQ26682.1 30 NGLFAITGATGAGKTTLLDAICLAL 54
                57899************98876655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.7
      AAA_22  80 ealeqalraravielliiDE 99 
                 +  +q++ + +  ++l  +E
  CTQ26682.1 214 TEAQQQALQESL-QVLTDEE 232
                 233333333333.2333333 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 7
      AAA_22  54 kdllrellralglelka.erlsseellealeqalrarav.ielliiDEaqhl 103
                 ++ l +l ++l     +  +ls +++ +a+eq+ ++r+  ++l+ + E + l
  CTQ26682.1 386 STRLAALRQKLATLPASpLTLSADDVAAAIEQQTQSRSLrQRLISLHEQHQL 437
                 2223333333322222233445566666666666666666666666666553 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.6
      AAA_22  23 rrlleqldeeakaee..erpevvfvtlpsst.sskdllrellralglelkaerlsseell.ealeqalrara 90 
                 + l++ql+++ +a+   ++ e+++ ++ ++t  s  + r++++++++     + +++e + ++l+q +++ +
  CTQ26682.1 554 KALTQQLQRDTEAAGrlAEEEQALTKAWQETcASLHITRDIAQEIND-----WMQEQERYeQQLYQLSQRLM 620
                 56677777777776677666666555555555555555555555553.....22223333244444443333 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00039      0.43       2      19 ..      33      50 ..      32     104 .. 0.91
   2 ?   -2.6   0.1         5   5.6e+03      23      68 ..     178     220 ..     170     232 .. 0.57
   3 ?   -2.3   3.4       4.1   4.5e+03      18      70 ..     757     810 ..     752     854 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
      AAA_28  2 ivitGgestGKTtlleaL 19
                ++itG+ ++GKTtll a+
  CTQ26682.1 33 FAITGATGAGKTTLLDAI 50
                68************9875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5
      AAA_28  23 gypvvpEaareileeklakgedalpwvedllafaervleeqleeea 68 
                 g++++  +  +++e++ a ++  l++ +++ a  + +l e+ ++ a
  CTQ26682.1 178 GTEIYGQISAMVYEQHKAARHA-LEK-FEAQAAGIVLLTEAQQQ-A 220
                 6666666666667666666664.776.46666666555544333.3 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 4.1
      AAA_28  18 aLaargypvvpEaareileeklakgedalpwv.edllafa.ervleeqleeeaaa 70 
                 aLaa  ++  + +   +l++++a++  +l+++ e+ l+ a ++++++ ++ ea  
  CTQ26682.1 757 ALAASRFSDREAFLAALLDDETAQRLTQLKQTlEQQLQQAaALCEQATRQHEA-H 810
                 56666556566666778888888888888888855555550444444444433.2 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00043      0.49      33      62 ..      30      59 ..      21      70 .. 0.83
   2 ?   -3.1   0.0       4.3   4.8e+03     121     144 ..     336     359 ..     301     361 .. 0.59
   3 ?   -2.7   0.1       3.3   3.7e+03     129     129 ..     407     407 ..     353     459 .. 0.54
   4 ?   -0.5   0.1      0.69   7.7e+02     129     179 ..     531     588 ..     518     595 .. 0.68
   5 ?   -2.9   0.0       3.8   4.3e+03      86     135 ..     594     640 ..     587     646 .. 0.65
   6 ?   -2.8   0.3       3.6     4e+03     112     137 ..     778     803 ..     741     840 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00043
      AAA_25 33 gelallaGapgtGKttlaldlalavatGkp 62
                ++l +++Ga+g+GKttl+  ++la+    p
  CTQ26682.1 30 NGLFAITGATGAGKTTLLDAICLALYHETP 59
                68899**************99999876555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.3
      AAA_25 121 rggtlltadvdaleaaieevegvr 144
                 r +++++a++++l++++ ++e+ r
  CTQ26682.1 336 RAQQQRQAELADLAQWLAAHERFR 359
                 233446788888888888876655 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.3
      AAA_25 129 d 129
                  
  CTQ26682.1 407 S 407
                 1 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.69
      AAA_25 129 dvdaleaaieevegvrlvviDplsralgg...densnsd......vgalvealeriarrt 179
                   dale+++ + ++ +l+++  ++++++    d ++  +      ++al +a+++ ++ +
  CTQ26682.1 531 RRDALEKEVAALKEEGLLILGQVKALTQQlqrDTEA--AgrlaeeEQALTKAWQETCASL 588
                 4567899999999999****9999999996433333..2335543377777777777655 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 3.8
      AAA_25  86 lrrRlravgeal.rddarllvldlagveslpLfakdrggtlltadvdalea 135
                 +++ +  +++++ r  ++l+ l+    ++l+L ++++++++l+++ ++  a
  CTQ26682.1 594 IAQEINDWMQEQeRYEQQLYQLS----QRLMLQSQINDQQALERQAEQQLA 640
                 55566667766634456666665....468888888888888777666544 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 3.6
      AAA_25 112 eslpLfakdrggtl.ltadvdaleaai 137
                 +  +L+++++  ++ l+++ +al +++
  CTQ26682.1 778 TAQRLTQLKQTLEQqLQQA-AALCEQA 803
                 4444544433333323332.2222222 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.022        24       3      25 ..      35      57 ..      33      95 .. 0.79
   2 ?    2.1   0.2      0.22   2.5e+02      37      98 ..     184     244 ..     156     271 .. 0.77
   3 ?    0.6   0.1      0.63   7.1e+02      42      84 ..     407     452 ..     382     495 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.022
                EESSTTSSHHHHHHHHHHHHTHE CS
         AAA  3 lyGppGtGKTllakavakelgve 25
                ++G  G GKT+l  a++  l  e
  CTQ26682.1 35 ITGATGAGKTTLLDAICLALYHE 57
                6899************9887543 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.22
                 S...STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA  37 k...yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                 +   +v e+ k  r+ +++ +++a   i+++ E+ + a ++   + ++ ++  ++Ll++ + +++
  CTQ26682.1 184 QisaMVYEQHKAARHALEKFEAQA-AGIVLLTEAQQQALQE---SLQVLTDEEKALLAQQQSQQQ 244
                 2444889999999*****999998.8********9999888...556666666666666555554 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.63
                 HHHHHHHHHHHHHHTS..TSEEEEEETGGGHHHHH..TTCCCHHHHH CS
         AAA  42 sekkirelfkeakeka..kpsilfiDEidalaksr..sgseseeeer 84 
                 s++++++ +++  +++  ++  + + E ++l ++r  + +++++++ 
  CTQ26682.1 407 SADDVAAAIEQQTQSRslRQRLISLHEQHQLLRKRlrQ-NAESVQQA 452
                 56666777766444445778999************852.32222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1045 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3113  (0.173629); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                       125  (0.00697194); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.57u 0.36s 00:00:01.93 Elapsed: 00:00:00.53
# Mc/sec: 5963.67
//
Query:       CTQ26683.1  [L=401]
Description: exonuclease, dsDNA, ATP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-24   84.6   4.1    8.1e-24   83.8   4.1    1.5  1  SbcD_C         Type 5 capsule protein repressor C-terminal do
    1.5e-15   58.2   0.0    2.7e-15   57.4   0.0    1.4  1  Metallophos    Calcineurin-like phosphoesterase
    1.3e-09   38.4   0.7    2.2e-08   34.5   0.2    2.6  2  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> SbcD_C  Type 5 capsule protein repressor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   4.1   1.4e-27   8.1e-24       2      94 ..     276     373 ..     275     374 .. 0.96

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 1.4e-27
      SbcD_C   2 frpLrrlkgdleeila....l.eepsekpawlevevtdedplpdlrerlrellegipvevlrlrrtrekasaeleqeaeetlaelspeevFerflaee 94 
                  +pL+++kgdl+ i+a    +   +++ p+wl++e+t+ed+l d ++ +++l+e++pvevl +rr re++++ l  +++etl+el +eevFer+la++
  CTQ26683.1 276 TQPLAVIKGDLAAITAqleqWrGVEQDPPVWLDIEITTEDYLHDIQRHIQALTEDLPVEVLLVRRSREQREKILLNAQRETLSELKVEEVFERRLALT 373
                 69*****************9667789*********************************************************************975 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   4.4e-19   2.7e-15       1     203 [.       1     225 [.       1     226 [. 0.68

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 4.4e-19
                  EEEEEEESBTB......TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHH....TSEEEEEC-TTSCHHHHHHHHHHHH CS
  Metallophos   1 lrilvigDlHl......algggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvky....pipvylllGNHegfeeellnkygyl 88 
                  +r+l+++D+Hl      +++ + +d++l++l d ++e+++d++++aGD++d+g+++++  el++++v +    + ++++l+GNH+  +  +ln  +++
   CTQ26683.1   1 MRLLHTSDWHLgqnfysKSRAAEHDAFLTWLLDRAQEHEVDAIIVAGDIFDTGSPPSYARELYNRFVVQlqqtGCRLVVLAGNHD--SVAMLNESRDI 96 
                  79***************999999999999998888999***************888878888888888889999999********..22444554444 PP

                  HHHHHHHEHHHCEEETSEEEEEETTE.EEEEEEESECEEETHHHHHHHHHHHSCHHHHCC..HHHHHH..........HHHHTTCSEEEEEESSESSC CS
  Metallophos  89 gifsepwrsdaevfnnlplaslgsgs.lkvlllhGgspellvsldklgslnleleapepg..dewlkd..........lekrekadwvivlgHsplyr 173
                    f ++    +  +  + l    +++   +  ++   p++   ++++g+  +e+ +           d          + + ++  ++i+ gH     
   CTQ26683.1  97 LAFLHTTVVANAGYAPIELPLRDGTPgAIFCPVPFLRPRE-LVTSQAGHSGREKQQLLLHaiS----DyyqeqyqqacTLRGDRPLPIIASGHLTTV- 188
                  4444444444444444444443333342222222223333.5666666666666655533442....334345555888888999999999999999. PP

                  SSSCSCCHHHHH.......HHHHHTTESEEEEESSSS CS
  Metallophos 174 gsgylfgdeale.......dllkkygvdlvisGHtHv 203
                  g++++ + + +        + +  + +d++  GH+H+
   CTQ26683.1 189 GASKSDAVRDIYigtldafPAQHFPPADYIALGHIHR 225
                  5555555555557777766666666799999999996 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.2   3.7e-12   2.2e-08       1     131 [.       1     227 [.       1     263 [. 0.62
   2 ?   -2.5   0.0      0.85   5.1e+03      66      82 ..     316     332 ..     263     366 .. 0.57

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 3.7e-12
  Metallophos_2   1 MklaiiSDlH............snldaleavlealkevgvdaiihaGDl.eeeep.....evleellela.....pvlaVrGNnD........... 62 
                    M+l++ SD H            ++ + l  +l++++e++vdaii+aGD+  +++p     e  +++  ++     ++++  GN+D           
     CTQ26683.1   1 MRLLHTSDWHlgqnfysksraaEHDAFLTWLLDRAQEHEVDAIIVAGDIfDTGSPpsyarELYNRFVVQLqqtgcRLVVLAGNHDsvamlnesrdi 96 
                    9***********9999885554444444445*****************995555545555334444333366679**********88888888888 PP

  Metallophos_2  63 .................................................eevveedvlreaaelgtdl..........peeaelelagek....vl 95 
                                                                     ++ +++++          l          + ++ ++l+g++    ++
     CTQ26683.1  97 laflhttvvanagyapielplrdgtpgaifcpvpflrprelvtsqaghsGR-EKQQL----------LlhaisdyyqeQYQQACTLRGDRplpiIA 181
                    888888777777777777777777777777777777765555544433211.22222..........11222222221345555555555543322 PP

  Metallophos_2  96 liHgdpl.............gvkdalaellke.........aeegsdvvvcGHtHvpe 131
                      H   l              +                   +  ++d++++GH+H+++
     CTQ26683.1 182 SGH---LttvgasksdavrdIY---------IgtldafpaqHFPPADYIALGHIHRAQ 227
                    222...2434543333333311.........134444444456677788888888874 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.85
  Metallophos_2  66 veedvlreaaelgtdlp 82 
                      +d++r+ + l++dlp
     CTQ26683.1 316 YLHDIQRHIQALTEDLP 332
                    44444555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2947.09
//
Query:       CTQ26684.1  [L=229]
Description: positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-29  100.2   0.0    1.2e-28   99.6   0.0    1.3  1  Response_reg  Response regulator receiver domain
    1.6e-28   98.6   0.0    2.8e-28   97.8   0.0    1.4  1  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.0   1.3e-32   1.2e-28       1     112 []       5     117 ..       5     117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 1.3e-32
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTES CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkagad 95 
                   +l+v+D+  +re +  +le++g+ +  eaed ++a+++l+e ++dlillD+++pg +Gl+++k +++e   +++pv++lta++eeed+v++l+ gad
    CTQ26684.1   5 ILVVEDEAPIREMVCFVLEQNGF-QPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQFIKLLKREAmtRDIPVVMLTARGEEEDRVRGLETGAD 100
                   8**********************.7778*************************************99998899************************ PP

                   EEEESSG-HHHHHHHHH CS
  Response_reg  96 dflsKpfdpeeLlkale 112
                   d+++Kpf+p+eL+++++
    CTQ26684.1 101 DYITKPFSPKELVARIK 117
                   *************9985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0   3.1e-32   2.8e-28       2      77 .]     151     225 ..     150     225 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 3.1e-32
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                   ++++ p+efklL++++ +p+rv+sre+Ll++vwg + +v+drtvdvhi+rLRk Le ++++ r+++tvrg GYr+
   CTQ26684.1 151 SPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEHSGHD-RMVQTVRGTGYRF 225
                  57899*****************************************************8855.5**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1822.65
//
Query:       CTQ26685.1  [L=431]
Description: sensory histidine kinase in two-component regulatory system with PhoB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-27   96.2   9.9    2.1e-27   95.3   9.9    1.5  1  PhoR         Phosphate regulon sensor protein PhoR
    1.3e-25   90.1   0.0    2.2e-25   89.3   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.3e-18   66.7   2.7    2.3e-18   66.0   0.8    2.4  3  HisKA        His Kinase A (phospho-acceptor) domain
    4.9e-09   36.2   0.0    1.2e-08   34.9   0.0    1.7  1  PAS          PAS fold
    6.4e-08   32.6   0.0      1e-07   31.9   0.0    1.3  1  HATPase_c_2  Histidine kinase-like ATPase domain
    0.00013   21.8   0.0    0.00022   21.1   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
  ------ inclusion threshold ------
      0.016   15.2   0.0      0.039   14.0   0.0    1.7  1  PAS_8        PAS domain
      0.069   13.1   0.0       0.17   11.8   0.0    1.6  1  HATPase_c_5  GHKL domain


Domain annotation for each model (and alignments):
>> PhoR  Phosphate regulon sensor protein PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   9.9   9.5e-31   2.1e-27       1      86 []       6      91 ..       6      91 .. 0.99

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 9.5e-31
        PhoR  1 swrrlllrlallllaallvgllvgalaallllalllllawhlyqllrLsrWLrkpkklepPdgsGlWeeifdglyrlqkrnrkrrk 86
                sw+rl+l+l+l++++al++g++vg+l+++ll+a+ +ll+wh+++l+rLs WL+ +++++pP g+G+We + +gl+++q rn+krr+
  CTQ26685.1  6 SWKRLALELFLACIPALILGAFVGHLPWFLLAAVTGLLIWHFWNLMRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQMRNKKRRR 91
                6***********************************************************************************96 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.0   9.7e-29   2.2e-25       1     110 [.     313     423 ..     313     425 .. 0.95

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 9.7e-29
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                 g+e++Lr +isnlv Nav+++++++ei+v+ +++ +   +sveDnG+Gi +e++++l e+f++ d++++r++gg+GlGl+ivk  v++++ +++++s+ 
  CTQ26685.1 313 GNEEQLRSAISNLVYNAVNHTPPGTEIRVSWQRTPQGALFSVEDNGPGIAPEHIPRLTERFYRvDKARSRQTGGSGLGLAIVKHAVNHHDSRLEIDSTV 411
                 67999***************88********997658***************************************************9*********** PP

                 TTEEEEEEEEES CS
   HATPase_c  99 grGttftftlpl 110
                 g+Gt+f f lp+
  CTQ26685.1 412 GKGTRFSFLLPE 423
                 ********9997 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4     3e+03      16      29 ..     164     177 ..     160     199 .. 0.75
   2 !   66.0   0.8     1e-21   2.3e-18       2      66 ..     204     268 ..     203     269 .. 0.92
   3 ?   -3.2   0.0         4     9e+03      40      52 ..     283     295 ..     276     301 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHC CS
       HisKA  16 PLsailgnaeaLkr 29 
                 PL+ +l na  L+ 
  CTQ26685.1 164 PLNLVLNNARHLEI 177
                 99999999998865 PP

  == domain 2  score: 66.0 bits;  conditional E-value: 1e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 ++ f+a+v+HELrtPL++++g++e++++++      +++l+t++++++r++ lv++lL+lsriea
  CTQ26685.1 204 RRNFFANVSHELRTPLTVLQGYLEMMQEQVLEGATREKALHTMREQTQRMEGLVKQLLTLSRIEA 268
                 899*************************9555567777*************************98 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4
                 HHHHHHHHHHHHH CS
       HisKA  40 yletiesearrld 52 
                 +l+++e+ea+ l+
  CTQ26685.1 283 MLRVVEREAQTLS 295
                 6888899998876 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   5.4e-12   1.2e-08       2     113 .]      99     194 ..      98     194 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 5.4e-12
                 HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEETT CS
         PAS   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfklrdgrpihlevraspvrdag 100
                 ++r+  eslpd+++++ e g i+++N  a+++l+l++ + +g+++l l+       ++ ++ ++l+q+  s+  +  +    +  +hle+r+ p+ d+ 
  CTQ26685.1  99 RFRSGAESLPDAVVLTTEEGAIFWCNGLAQQILNLRWPDDSGQNILNLL-------RYPEFANYLKQRDFSKPLNLVL----NNARHLEIRVMPYSDK- 185
                 678889*******************************************.......8999********9999988855....55**************. PP

                 EEEEEEEEEEEES CS
         PAS 101 geilgflgvlrdi 113
                     ++l+v+rd+
  CTQ26685.1 186 ----QWLMVARDV 194
                 ....999999997 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   4.6e-11     1e-07      31     113 ..     317     402 ..     278     419 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 4.6e-11
  HATPase_c_2  31 eirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikglvDeve 113
                  ++r a++ +++Nav+h  ++    +++v+++++++   ++v+D+Gpg  pe++p+ te  +      + +   +G+Gla++k+ v++ +
   CTQ26685.1 317 QLRSAISNLVYNAVNHTPPG---TEIRVSWQRTPQGALFSVEDNGPGIAPEHIPRLTERFYrvdkarSRQTGGSGLGLAIVKHAVNHHD 402
                  78889999999999999986...66**************************99988765559*998888889999*********99874 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   9.7e-08   0.00022       4      83 ..     319     395 ..     316     419 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 9.7e-08
  HATPase_c_3   4 ekAlaelvdNsld..AdaenvkievnknrgktgeivieDdGkGmseeelkn.alrlatsskeakrkstslGkkGiGlklAsls 83 
                  ++A+  lv N++      +++ +++++ + + + +++eD+G G+ +e + +   r+ + +k     s+++G  G+G  lA+++
   CTQ26685.1 319 RSAISNLVYNAVNhtPPGTEIRVSWQRTP-QGALFSVEDNGPGIAPEHIPRlTERFYRVDKA---RSRQTGGSGLG--LAIVK 395
                  689999999*9984455677888888876.6899*****************55589999999...68999999999..45443 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05     0.039       2      54 ..      99     149 ..      98     163 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
       PAS_8   2 rlralfesspdgiavvd.lgdrivdvNqaalellGys.adlkgellgqllpvlrp 54 
                 r+r+  es+pd+++++  +g  i ++N  a+++l ++ +d++g+ +    + lr+
  CTQ26685.1  99 RFRSGAESLPDAVVLTTeEGA-IFWCNGLAQQILNLRwPDDSGQNIL---NLLRY 149
                 6666679*******9885666.***************7666665554...33333 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.6e-05      0.17       5      89 ..     317     409 ..     314     417 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.6e-05
  HATPase_c_5   5 dlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg..........ek..kklesskskkeehGiGlksireivkkykgnlsiea 89 
                   l + ++nl  NA++          +Ir++ +++ +  ++s+e +  g          e   +  + ++++++  G+Gl  +++ v++++  l+i+ 
   CTQ26685.1 317 QLRSAISNLVYNAVNHTPP----GTEIRVSWQRTPQGALFSVEDNGPGiapehiprltERfyRVDKARSRQTGGSGLGLAIVKHAVNHHDSRLEIDS 409
                  6777888999888877655....457****************99977777776666641143334466788899****************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3430.42
//
Query:       CTQ26686.1  [L=467]
Description: branched chain amino acid transporter (LIV-II) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.5e-159  529.9  33.2   5.2e-159  529.7  33.2    1.0  1  Branch_AA_trans  Branched-chain amino acid transport protein
  ------ inclusion threshold ------
       0.21   11.7   0.0       0.47   10.6   0.0    1.5  1  AnkUBD           Ankyrin ubiquitin-binding domain


Domain annotation for each model (and alignments):
>> Branch_AA_trans  Branched-chain amino acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  529.7  33.2  5.8e-163  5.2e-159       2     428 ..      35     457 ..      34     458 .. 0.99

  Alignments for each domain:
  == domain 1  score: 529.7 bits;  conditional E-value: 5.8e-163
  Branch_AA_trans   2 kkdvlviglmlFalffGAgNlIfPpllGlaagenvlvailgFlltgvglpllgiiavaksgkglkelaervskvfallfaiilyLsiGplfaiP 95 
                      ++d++++g+m+Falf+GAgN+IfPp++Gl+age+v++a++gFl+t+vglp+l+++a+ak+g+g+++l+++++kv+++l+a+++yL++Gplfa+P
       CTQ26686.1  35 SRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAIGFLITAVGLPVLTVVALAKVGGGVESLSTPIGKVAGILLAVVCYLAVGPLFATP 128
                      6799****************************************************************************************** PP

  Branch_AA_trans  96 RtgavafevavapllseeekalalliytlvffaialllslkpsklvdrvGkiLtPvllvlllilvvaaiikplgeikeaskayksaplikGfle 189
                      Rt++v+fev++apl++  + +l lliy++++fa+++l+sl+p+kl+d+vG++L+P+++++l++l+vaaii+p+g+i++a +ay+ ap+++Gf++
       CTQ26686.1 129 RTATVSFEVGIAPLTG--DGPLPLLIYSVIYFALVILVSLYPGKLLDTVGNFLAPLKIIALIVLAVAAIIWPAGPISDALEAYRTAPFSNGFVN 220
                      ****************..9*************************************************************************** PP

  Branch_AA_trans 190 GYlTmDalaslaFgiviveaikskgvkekkevikatikagliaavlLalvYlalallGatsaslakeaengaeiLskasqelfGslGsllLavi 283
                      GYlTmD+l++++Fgiviv+a +s+gv+e + ++++t++agl+a+v+L+l+Ylal++lG++sa+l+++++nga+iL++++q++fG +Gs+lLa++
       CTQ26686.1 221 GYLTMDTLGAMVFGIVIVNAARSRGVSEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSATLVDQSANGAAILHAYVQHTFGGAGSFLLAAL 314
                      ********************************************************************************************** PP

  Branch_AA_trans 284 itlacLtTavGLitavseyFskllpklsYkklvviftlisfllanlGltkiiavsvPvLvllYPlaialivlsllekllkskkvvykltllvtl 377
                      i++acL+TavGL++a++e+F ++lp +sY++lv++++l+s++++nlGl+++i+vs+PvL+++YP +ial+vls+++++++++++v++ +++++l
       CTQ26686.1 315 IFIACLVTAVGLTCACAEFFAQYLP-FSYRTLVFVLGLFSMAVSNLGLSHLIQVSIPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPAMFISL 407
                      *************************.******************************************************************** PP

  Branch_AA_trans 378 ivalldalkalkikievlnsllkvlPlaeeglgWlvpalvgliigliikka 428
                      +++++d++k++++  ++l ++++ lPlae+gl+Wl+p++v++i+++i+++a
       CTQ26686.1 408 MFGIIDGIKSSAFA-AILPDWTARLPLAEQGLAWLMPTAVMTILAVIWDRA 457
                      *********98776.9*******************************9875 PP

>> AnkUBD  Ankyrin ubiquitin-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   5.2e-05      0.47      21      76 ..     214     274 ..     210     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.2e-05
      AnkUBD  21 flnacvegvvesdlliveiyklvgvdiarlldeeevrlltrpsaf.....dvgytlvhlai 76 
                 f n  v+g +  d l + ++ +v v+ ar +   e rlltr + +      vg tl++la+
  CTQ26686.1 214 FSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVSEARLLTRYTVWaglmaGVGLTLLYLAL 274
                 779999***********************************98762222247888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3305.64
//
Query:       CTQ26687.1  [L=457]
Description: proline transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.2e-106  354.8  48.4   7.3e-106  354.6  48.4    1.0  1  AA_permease     Amino acid permease
    5.4e-46  157.3  55.1    6.1e-46  157.1  55.1    1.0  1  AA_permease_2   Amino acid permease
      7e-06   25.1  24.7      7e-06   25.1  24.7    3.5  3  Spore_permease  Spore germination protein


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.6  48.4  1.2e-109  7.3e-106       1     474 [.      15     451 ..      15     455 .. 0.97

  Alignments for each domain:
  == domain 1  score: 354.6 bits;  conditional E-value: 1.2e-109
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+ ++alg++iGtglf g++ ++  aGp ++llay+++gv  +++m++lge+++++p +++f+ ya+++lg  +G+ +G+ y+f  ++v+++++ta +
   CTQ26687.1  15 HIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGGLAGYITGWTYCFEILIVAIADVTAFG 111
                  7889************************.********************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivg.iillaggkpnkga.gfrflgdngsifknnlppgfakee 194
                  i+++ w  ++ +p  w++++ ++++++++nl++vkv+ge ef+++++k+ +ii++i+ g  i+++g ++  ++ g+++l++ng+    ++++g     
   CTQ26687.1 112 IYMGVW--FPTVP-HWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMILAGfGIIIWGIGNGGQPtGIHNLWSNGG----FFSNG----- 197
                  ******..*****.*********************************************845555555555556**********....99999..... PP

  AA_permease 195 egafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlapli 292
                      +++++ ++ v+fa+ Gie+++i+agE+kdPeksiP+ai++v +ri++fYv+ l++i+++ p+n  g         spfv+ ++++g+ ++a+++
   CTQ26687.1 198 ---WLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTDG------SPFVLTFQHLGITFAASIL 286
                  ...9****************************************************************99999......9****************** PP

  AA_permease 293 naviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrf 390
                  n+v+lta ls++ns ++   R+l+ +a++g aPkv++k s+rg P++ +++++i+ l+a+ l+++ ++  +vf ++ ++++++++ vw++i+ls++ f
   CTQ26687.1 287 NFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKVFAKTSRRGIPWVTVMVMTIALLFAVYLNYIMPE--NVFLVIASLATFATVWVWIMILLSQIAF 382
                  ********************************************************************..**************************** PP

  AA_permease 391 Rkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                  R+ l+     ++ l+fk ++++ +++++l++l +i+ + ++ + ++             +++y+++ ++ ++l+g+ +++++ r
   CTQ26687.1 383 RRRLS--PEEVKALKFKVPGGVVTTVIGLLFLAFIIALIGYHPDTR-------------ISLYVGMAWIALLLLGWVFKTRRER 451
                  ***55..555578*********************************.............********************99987 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.1  55.1     1e-49   6.1e-46       1     416 [.      11     434 ..      11     445 .. 0.86

  Alignments for each domain:
  == domain 1  score: 157.1 bits;  conditional E-value: 1e-49
  AA_permease_2   1 lsllsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlas 94 
                    ls++   ++++gs+ig+g f  +  ++  +gp+++l ++i+ ++  ++ + ++ E+s + p     + y+++  g +++++++w+++f +++v+ +
     CTQ26687.1  11 LSTRHIRFMALGSAIGTGLFYGSadAIKMAGPSVLLAYIIGGVAA-YIIMRALGEMSVHNPAASSFSRYAQENLGGLAGYITGWTYCFEILIVA-I 104
                    56777889************999987878***************9.6677799****989********************************88.5 PP

  AA_permease_2  95 ilsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.....stetdt..ff 183
                      + a++ ++++++p++ ++ w        ++++++++n++++k  + + ++   +k+  ++ii+i++g+ ++  g+ +       ++ +++  ff
     CTQ26687.1 105 ADVTAFGIYMGVWFPTVPHWIWVL-----SVVLIICAVNLMSVKVFGELEFWFSFFKV-ATIIIMILAGFGIIIWGIGNGGqptgiHNLWSNggFF 194
                    566677777777889987754333.....45788899*********************.6**********999665555444445766666688** PP

  AA_permease_2 184 pngwpgvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivv 277
                    +ngw g++++l +v+++++G+e +   + e+k   k +p+ai+++ + +lv+y+++ ++++ + p++++ + ++  s++ l f+ +g +++a+i++
     CTQ26687.1 195 SNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDpeKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGT-DG--SPFVLTFQHLGITFAASILN 287
                    ******************************776669*********************************97.55..46****************** PP

  AA_permease_2 278 ilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilr 373
                    +++  ++l ain+ v+g+ r+l+ +a++g  P++fak++++g+p++++++  i  l+ + l ++ +++ + +++s+++++ ++++++++++ +  r
     CTQ26687.1 288 FVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKVFAKTSRRGIPWVTVMVMTIALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFR 383
                    *************************************************99999877776777888***************************999 PP

  AA_permease_2 374 kkrphl..kr.....pgkilvaiigalfllfllvalffppk.gpatqssli 416
                    ++   +  k      pg ++++ ig+lfl f+++++ + p+ +++ + +++
     CTQ26687.1 384 RRLSPEevKAlkfkvPGGVVTTVIGLLFLAFIIALIGYHPDtRISLYVGMA 434
                    996544244465556777999999999999999887766553555555543 PP

>> Spore_permease  Spore germination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1  24.7   1.2e-09     7e-06       2     313 ..      11     346 ..      10     349 .. 0.75
   2 !    2.8   0.3    0.0071        42      24      56 ..     319     352 ..     316     359 .. 0.81
   3 ?   -2.0   1.9      0.21   1.2e+03      31      45 ..     367     381 ..     355     422 .. 0.59

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.2e-09
  Spore_permease   2 istkqlfvlivsfqlGvgiltlprsvaeqatpdgWisvllagiiililvllmlkllkkfpe.ktliellkkilgkwLGsllsilfilyFlllaaf 95 
                     +st+ + ++     +G+g+ +  + +++ a+p+  ++ +++g+++ i++  + +++ ++p  +++  + ++ lg + G + +  ++   l++a+ 
      CTQ26687.1  11 LSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAaSSFSRYAQENLGGLAGYITGWTYCFEILIVAIA 105
                     7899999************************************999999999888887776156778**************************** PP

  Spore_permease  96 elRefseliqvflledtplwiiilllllvilYlvvkGieslar.....eflfiivilliilllillfslklae......iknlr...Pvlgngik 176
                      +  f+  + v+ ++++p wi +l ++l+i  +   +++++        f+ +++i+++il  + +++ ++ +      i+nl      + ng+ 
      CTQ26687.1 106 DVTAFGIYMGVW-FPTVPHWIWVLSVVLIICAVNLMSVKVFGElefwfSFFKVATIIIMILAGFGIIIWGIGNggqptgIHNLWsngGFFSNGWL 199
                     **********99.799****9999999888877777777777664444222233333333333344444443322233356664222467899** PP

  Spore_permease 177 pvlkslkttslsflgveillllvpflkdkkkvkkaallgvlistl.lyllttlivilvlsveqlkkatwptlsllkvievpefierlevllivvw 270
                      +++sl+ ++++++g+ei+ +     kd++k+   a+ +v + +l +y+ t+++ ++++  +q+ +   p++ +++ + ++ f  ++  +++++ 
      CTQ26687.1 200 GMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILvFYVGTLFVIMSIYPWNQVGTDGSPFVLTFQHLGIT-FAASILNFVVLTA 293
                     ********************************9999999999886378888889999***********************9.7777666666666 PP

  Spore_permease 271 ilvifakialy....lyaav..lgisevfkikkkk....llvililivilias 313
                      l  +++ +      l +++   +  +vf +  ++    ++v+++ i++l+a+
      CTQ26687.1 294 SLSAINSDVFGvgrmLHGMAeqGSAPKVFAKTSRRgipwVTVMVMTIALLFAV 346
                     65555443332000022222003334677777777777666666666666655 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0071
  Spore_permease  24 prsvaeqa.tpdgWisvllagiiililvllmlkl 56 
                     p++ a+++     W++v++  i+ l++v+l + +
      CTQ26687.1 319 PKVFAKTSrRGIPWVTVMVMTIALLFAVYLNYIM 352
                     6667777766667****************99876 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.21
  Spore_permease  31 atpdgWisvllagii 45 
                     at   Wi++ll  i+
      CTQ26687.1 367 ATVWVWIMILLSQIA 381
                     344455555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1013  (0.0565006); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3543.20
//
Query:       CTQ26688.1  [L=605]
Description: maltodextrin glucosidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-86  289.9   0.0    5.1e-86  289.3   0.0    1.2  1  Alpha-amylase    Alpha amylase, catalytic domain
    1.1e-05   25.5   0.0    2.8e-05   24.3   0.0    1.7  1  Alpha-amylase_N  Alpha amylase, N-terminal ig-like domain
    0.00033   20.7   0.0    0.00074   19.6   0.0    1.6  1  Malt_amylase_C   Maltogenic Amylase, C-terminal domain
     0.0048   17.2   0.2      0.039   14.3   0.0    2.6  2  DUF3459          Domain of unknown function (DUF3459)


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.3   0.0   1.1e-89   5.1e-86       1     337 []     177     493 ..     177     493 .. 0.95

  Alignments for each domain:
  == domain 1  score: 289.3 bits;  conditional E-value: 1.1e-89
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGG CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkr 96 
                    GDL+Gi+ekL+Ylk+LGvta++l+P+f++p + h+Yd++dy+ +dp+fG  ++l +L ++++  g+++ilD V+NHt+d+h wf+++ + +g   +
     CTQ26688.1 177 GDLDGISEKLPYLKQLGVTALYLNPVFAAP-SVHKYDTEDYRRVDPQFGGDAALLRLRHNTQRAGMRMILDGVFNHTGDSHPWFDRHQQGSG---G 268
                    9*****************************.********************************************************99666...3 PP

                    CCC-E......ESS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCC....CCCCCCTTT..-SEEEETTCCCTTTCCCCHC CS
  Alpha-amylase  97 dyyiwkegkeekeppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkd....vvkfwlekg..idGfRlDvvkhvskveales 186
                    +          ++p++ w+   d+  ++ + +a+    +l++++lp+L++++ ++++e++     +v++wl+    +dG+RlDvv+++ +  ++++
     CTQ26688.1 269 AG---------HDPDSPWR---DWFTFSEEGQAH---NWLGYASLPKLDYRSTSLVNEIYAgedsIVRHWLKAPwsMDGWRLDVVHMLGEGGGARN 349
                    33.........34788898...555555555554...599*******************977889********999******************** PP

                    CHCCHHHHHHHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-C.CCTTCE CS
  Alpha-amylase 187 ngeflheftqalnetvasrkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklkellkkwlkalee.aaeeav 281
                    n +++  +tqa+++++    e++++gE+++da+++l++++++a ++++  ++fp +++  +++i+++ ++i+a++++++++++++ l++ ++ +++
     CTQ26688.1 350 NLQHIAGITQAAKQAQ---PEAFVFGEHFGDARQWLQADAEDAAMNYR-GFTFPIWGFLANTDISYDPQKIDAQTCMAWMDNYRAGLSHqQQLRMF 441
                    *************887...*****************************.****************************************9999*** PP

                    EES--TTS--HHHHTTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCCCT----STT CS
  Alpha-amylase 282 tflgnHDqeRilsrlgddsaeaekklklaaillltlrGvpviYyGeEigmtggkdp 337
                    + l++HD++R+ s lg+d a    +l la+++l++++Gvp+iYyG+E+g+ g +dp
     CTQ26688.1 442 NQLDSHDTARFKSLLGKDVA----RLPLAVVWLFSWPGVPCIYYGDEVGVDGNNDP 493
                    *******************6....****************************9987 PP

>> Alpha-amylase_N  Alpha amylase, N-terminal ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   6.2e-09   2.8e-05       6     108 ..       4     104 ..       1     113 [. 0.80

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 6.2e-09
                      -B--SSTTTEEEEETTEEEEEEEEETTT-S.EEEEEEEETTS-.TTS--EEEEEEEEEE-..SSEEEE..EEEEE-TTS-EEEEEEEE-TS-EE CS
  Alpha-amylase_N   6 iyHrpeseyayaydektlhirLrtkkddve.kveliygdpyeweekwkseetemkkiasd..elfdYw..eaeltlkkkrlrYlFeleedgesl 94 
                       +H p  +++  +++++l i+L+   + +  +++l +++++e        +++m++  +        w  e++l + + r+rY F+l ++++++
       CTQ26688.1   4 AWHLPVAPFIK-VQQDRLFITLWLSGESLPqRITLRAEEDNEE------LSLPMQRLRQApqPGVVAWrgEISLASGQPRRRYSFKLLWADHQR 90 
                      59999999975.59**************9889*****999988......777887776663333334524678888899*************** PP

                      EEESSEEESSHHHH CS
  Alpha-amylase_N  95 vytekgfydekpld 108
                      ++t++gf + +p +
       CTQ26688.1  91 WFTPQGFTRFPPAR 104
                      ******99988877 PP

>> Malt_amylase_C  Maltogenic Amylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.7e-07   0.00074       1      47 [.     530     579 ..     530     587 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.7e-07
                     -EEEE---S-TTEEEEEEEETTEEEEEEEE.SS-EEEEE--G...GGTT-E CS
  Malt_amylase_C   1 GsfefleadnrkvlaYlReyedetilvvaN.rsaqaveldls...elagrv 47 
                     G  ++++a++ +v +++R y+++++lv++N  +a +v ++ s   ++ag++
      CTQ26688.1 530 GGCQVIYAED-NVVVFVRVYKQQRVLVAINrGEACEVVIEDSpllNVAGWT 579
                     5678899999.9******************666666666555555566655 PP

>> DUF3459  Domain of unknown function (DUF3459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.49   2.2e+03       4      12 ..     228     236 ..     223     244 .. 0.84
   2 !   14.3   0.0   8.8e-06     0.039       1      87 [.     513     599 ..     513     603 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.49
                 HHHHHHHHH CS
     DUF3459   4 dLLaLRree 12 
                 +LL+LR+++
  CTQ26688.1 228 ALLRLRHNT 236
                 699999987 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 8.8e-06
                 HHHHHHHHHHHHCCCTT--CGGEEEEEEECTCEEEEEEEETTEEEEEEEE-SS......CGCCS-..SS---SEEEEECT--S....SSEE-T.TE CS
     DUF3459   1 lyrdLLaLRreePaLadarrgglevavlgdgallvrwrlgdgrllrllaNLgd......epvtlp..pegaagkllfsseaaraggdagrlpp.es 87 
                 ly+++ +LR+++ aL+     g++v + +++ ++v  r+++++++++++N g+      e    +     +ag +l +   a ++g   +lp+  +
  CTQ26688.1 513 LYQRMAKLRKAHQALRYG---GCQV-IYAEDNVVVFVRVYKQQRVLVAINRGEacevviE----DspLLNVAGWTLQEGAGAFQDG-VLTLPAiSA 599
                 79**********988665...8888.66788888888889***********997644222....2445577777777777777666.888887444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4438.47
//
Query:       CTQ26689.1  [L=300]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-24   85.8   0.4    3.4e-24   85.4   0.4    1.2  1  LysR_substrate  LysR substrate binding domain
      2e-14   53.3   0.0    3.8e-14   52.4   0.0    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.4   3.8e-28   3.4e-24       2     206 ..      89     291 ..      88     293 .. 0.95

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 3.8e-28
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGG.S CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLar.g 93 
                     +g +++L i+   ++  + l pl+a+f a++P+ +l+ +  + +   + l ++ +D+ + a ++  ++++  ++ L+    + v++p+hpLa+ +
      CTQ26689.1  89 AGWERELAIALDASFPFSALLPLIAEFYAQNPQTRLNFSHHTLAGSWEELTHHGADIILGAINEppTSAEWSWQTLGALDNIFVVAPHHPLAQaK 183
                     67899****************************************************999877777***************************** PP

                     SSECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEE CS
  LysR_substrate  94 epvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyr 188
                     ep++  +L +++ i+ ++++++   l+ +     l+ ++ + v+++++ ++l  aGlG ++lpr+++r++l  g lv   ++ ++ +  +y+++r
      CTQ26689.1 184 EPLANKQLSQHRAIVIRDSARYCHPLNSN----LLDEQPQIGVDDFASKVELLCAGLGCGFLPRHIARPWLVKGSLVEKSVACWREKDITYMAWR 274
                     *****************9**999999955....7777888999**************************************************** PP

                     TTCCCHHHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidflre 206
                     +g     a r+++++l++
      CTQ26689.1 275 SGN-DGLAQRWWREALLR 291
                     **9.99999999999865 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   4.2e-18   3.8e-14       4      60 .]       8      64 ..       5      64 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 4.2e-18
                HHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  4 lrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l +++a+ ++gsf+ AAe L+ +++a+s +i++LE+ l+  L++R+g++++ T+ G+
  CTQ26689.1  8 LMILDALDRHGSFATAAESLYKTPAALSYMIQKLESDLNIVLLDRSGHRAKFTDTGR 64
                789****************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2336.60
//
Query:       CTQ26690.1  [L=213]
Description: putative cysteine hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-24   86.9   0.2    5.4e-24   85.3   0.2    1.7  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.2     3e-28   5.4e-24       1     175 []      12     165 ..      12     165 .. 0.92

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 3e-28
  Isochorismatase   1 talvviDmqndfveegvkeseeisavveninkllkaarkagipviftrdvheleevkgdlderkaaphfkpgttgaelvpelaplegdvvvdKt 94 
                      +al++iD q ++   ++ ++ + + + +n++ l+ka +  ++pvi+t  +++                   + +g    + la+ ++ + +++t
       CTQ26690.1  12 SALIFIDHQPQMS--FGVANIDRQTLKNNTVALAKAGKIFNVPVIYTSVETK-------------------SFSGYIWPELLAVHPDVKPIERT 84 
                      79***********..*************************************...................3333333333444458999**** PP

  Isochorismatase  95 rfsafagtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlkqafatvitted 175
                       ++++++  +++++k++g+k++v++ ++t+vC    a+ al+ Gyev+vv+D  ++ s ++h+ +++r+ qa+a+++t+++
       CTQ26690.1  85 SMNSWEDDAFVAAVKATGRKKLVISALWTEVCLTFPALMALEAGYEVYVVTDTSGGTSVDAHERSIDRMVQAGAVPVTWQQ 165
                      ******************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1733.46
//
Query:       CTQ26691.1  [L=181]
Description: putative transport protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-07   32.0   0.0    1.5e-07   31.4   0.0    1.3  1  ABM       Antibiotic biosynthesis monooxygenase
  ------ inclusion threshold ------
       0.01   16.2   0.0      0.019   15.3   0.0    1.5  1  DUF1330   Domain of unknown function (DUF1330)


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.7e-11   1.5e-07       3      73 ..       8      77 ..       6      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.7e-11
                EEEEEEEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEETSTTEEEEEEEESSHHHHHHHHTSHHHH CS
         ABM  3 iviaeirvkpgqaeafldafaeavesllaeepGclgyellrstedpdevvvieeWeseaaleahlksphfk 73
                ++++    +p + + +++ + ++ + + ae pG+lg+ + r+  +++ + vi ++++ ++l a+++s+  +
  CTQ26691.1  8 TLVISHLLDPQHSQRYEEWLGKIMP-IAAEFPGHLGANVIRPAAGQNLWSVIIRFDTLEHLYAWTQSETRR 77
                55566668999**************.779**************************************9766 PP

>> DUF1330  Domain of unknown function (DUF1330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   2.2e-06     0.019       4      76 ..      10      79 ..       8      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.2e-06
     DUF1330  4 wiaqv.kvtdpeaykeYaalaeaalakyggrflvrggkvevlEGdeeptrlvvieFpsveaarawyeSpeYqaa 76
                +i+++ + +  ++y+e+  ++ ++ a++ g++ +   ++ +          v+i+F+ +e+  aw +S+  +++
  CTQ26691.1 10 VISHLlDPQHSQRYEEWLGKIMPIAAEFPGHLGANVIRPAAGQN----LWSVIIRFDTLEHLYAWTQSETRRQL 79
                688888999999********************999777666555....566*****************976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1476.77
//
Query:       CTQ26692.1  [L=622]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.4e-123  413.1   0.6   2.9e-123  412.8   0.6    1.0  1  Amidohydro_3  Amidohydrolase family
    2.1e-07   30.6   0.0    1.3e-05   24.7   0.0    2.4  2  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.8   0.6  3.2e-127  2.9e-123       1     473 []      52     536 ..      52     536 .. 0.98

  Alignments for each domain:
  == domain 1  score: 412.8 bits;  conditional E-value: 3.2e-127
  Amidohydro_3   1 eviDakGrlvlPGFvDsHtHlagggvnl.rllrlpdarvtslegvltavrdqagttpkgrwi.vgeGwdeaqfaeerfpyalaeldevledapvlla 95 
                   +++D+kG +v+PG+ DsH+Hl++gg+n+  +lr+++  v+sl+++l++++dqa +tp ++w+ v++Gw+e qfae+r+p +l el+e+++d+pv++ 
    CTQ26692.1  52 QIVDLKGHTVIPGLNDSHLHLIRGGLNYnLELRWEG--VPSLADALRMLKDQADRTPSPQWVrVVGGWSEFQFAERRMP-TLEELNEAAPDTPVFVL 145
                   78**********************************..*****************************************.***************** PP

  Amidohydro_3  96 aldtHaavrnsaaldlagiteatpdpaggeilrdangegatgllreg.afhlvldla...pl.areaeaaavaaalaalasyGitsv.eagggnvss 186
                   +l ++ a++n+aal+ +g+t++tpdpaggei+rd+ g+ +tg+l ++ ++ ++++++   p+ + + + +++++++++l++ G+ts+ +aggg++++
    CTQ26692.1 146 HL-YDRALLNRAALKAVGYTKETPDPAGGEIVRDSHGN-PTGMLIAKpNAMILYATLakgPKlPLDLQVNSTRQFMRELNRLGLTSAiDAGGGFQNY 240
                   *9.***********************************.*****************9***666********************************** PP

  Amidohydro_3 187 lddleplfeltaeeklplrvi.......ikelldaaerlglplspgseeltigavklfadgvlgsrtalltepyftgwpdfedea...laelvaaad 273
                    +d+e++ +l+a++++++r++       +k++l+++er++  l+    +   +  +++++g++   +a+  e ++ + pd++++    l+++v+ + 
    CTQ26692.1 241 PEDYEIIEQLHAKDQMTVRIAynlftqrPKQELEDFERWTDMLK---PGQGTDFYRANGAGEMLVFSAADFEDFLQPRPDLPQGMedeLERVVRHLV 334
                   ********************************************...7999************************5555555333333********* PP

  Amidohydro_3 274 ergldvaihaigdaavddvldafeaaaekngnqdrr.rlehaegvtesqiervaalqvaagvqpvfnfedelldsrlgperargstpvkellnagvk 369
                   e+ +++++ha++d++++++ld fe+++++ ++++ +   +hae++te++ierv+al++ ++vq++++f+ e++++r+g+e++++++pv+ +l+ +v+
    CTQ26692.1 335 EHRWPFRLHATYDESISRMLDVFEKVNRDIPFNGLHwFFDHAETITERNIERVKALGGGIAVQHRMAFQGEYFVDRYGKEAVKHTPPVAKMLALDVP 431
                   ********************************************************************99*************************** PP

  Amidohydro_3 370 valgsD.apvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelaearvrlt 465
                   v lg+D ++v++++pw  ++++v ++t++g++ +++ ++l++  al l+T+g+A++ +++ +kG+L++G+ ADlvvl++d + v ++e++ ++ +lt
    CTQ26692.1 432 VGLGTDaTRVASYNPWTALYWLVSGRTVGGMAMYDDANRLPRDVALELWTAGSAWFSSEQGKKGRLAAGQLADLVVLSKDYFSVAEEEIKGIESVLT 528
                   ************************************************************************************************* PP

  Amidohydro_3 466 vvdGrvvy 473
                   vvdG+vvy
    CTQ26692.1 529 VVDGKVVY 536
                   *******9 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0039        35       1      20 [.      60      75 ..      60     101 .. 0.78
   2 !   24.7   0.0   1.4e-09   1.3e-05     224     344 .]     406     535 ..     323     535 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0039
                  EEEE-EEEEEEECETTECSS CS
  Amidohydro_1  1 ivlPGlIDaHvHleqsllrg 20
                  +v+PGl D+H+Hl    +rg
    CTQ26692.1 60 TVIPGLNDSHLHL----IRG 75
                  69**********9....444 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1.4e-09
                   H........SEHHHHHHHHHHHHTSCEEEEEECT...............TSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHT CS
  Amidohydro_1 224 i........lrsgrealrkaldeGvkvglgtDga...............asgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkal 297
                   +          +++++++k+l  +v vglgtD a                sg+++    ++  ++         d++  l+   al++ T + A + 
    CTQ26692.1 406 YfvdrygkeAVKHTPPVAKMLALDVPVGLGTD-AtrvasynpwtalywlVSGRTV----GGMAMY---------DDANRLPRDVALELWTAGSAWFS 488
                   355555555789********************.4366555555555555555555....233333.........4455566666************* PP

                   T-TTTSSSS-TTSB--EEEECCCT....CGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 298 glddkvGsievGkdADlvvvdldi....laafvglkkdgnvkkvivkGklv 344
                   +   k+G++++G+ ADlvv+  d      +++ g+++    + ++v+Gk+v
    CTQ26692.1 489 SEQGKKGRLAAGQLADLVVLSKDYfsvaEEEIKGIES----VLTVVDGKVV 535
                   ********************77333556777777777....7888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4397.86
//
Query:       CTQ26693.1  [L=286]
Description: Fructose-bisphosphate aldolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-93  312.2   0.4    3.7e-93  312.1   0.4    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II
     0.0023   17.3   0.6      0.013   14.8   0.1    2.1  2  ThiG           Thiazole biosynthesis protein ThiG
  ------ inclusion threshold ------
      0.072   12.5   0.1       0.22   11.0   0.1    1.7  1  His_biosynth   Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.1   0.4   6.1e-97   3.7e-93       1     279 [.       3     284 ..       3     285 .. 0.96

  Alignments for each domain:
  == domain 1  score: 312.1 bits;  conditional E-value: 6.1e-97
                    HHHHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHT...-EEEEEE----GHHHHHHHH CS
  F_bP_aldolase   1 vnlkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyaggaealaelvraaaeaykkasvpvalhlDHgakleglkkai 96 
                    v++k++l++A + gyavg+fn++nle+v avl +a++++sPvIl +s g+++++  g++ + ++v +a+e+++  +vpvalhlDHg++ e +++ai
     CTQ26693.1   3 VSMKDMLQHALRDGYAVGQFNINNLEWVGAVLSTAQQCRSPVILGVSGGTVKHM-LGLKCIHDIVVNAMEYLH-IDVPVALHLDHGTSREACEAAI 96 
                    589************************************************666.89*************887.8********************* PP

                    HHS-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------TT-TTTS--HHHHHHHHHHHH-EEEE--SS---SS--SS..--TH CS
  F_bP_aldolase  97 eagfsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgvvaeeklyTdpeeaeefveetgvdalAvaiGnvHGvykpkpkLdfe 192
                     agfsS+M+DgS+lp+ eN+a+t+ +v +ah+ g+svEaElG+i+g+edg+v++e +y+dp+e+ + v+et+vd+lA+a+G++HG yk k++L f 
     CTQ26693.1  97 AAGFSSIMFDGSHLPFRENLAITRHLVTLAHSKGISVEAELGTIAGSEDGIVNSEVIYADPQECYTLVTETQVDCLAAALGSTHGLYKGKARLGFT 192
                    ***************************************************99999**********************************99**** PP

                    HHHHHHHHH.--SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHHHHG...GE-HH.H-HHHHHHHHHHHHHHHHHHHHHHTT-SS CS
  F_bP_aldolase 193 rlkeiqkav.vplVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkavkke...kenkk.ydprkllkeaeeamkevvkekiellgsag 279
                     +k+i+++v vplVlHGg+g+ de++r+ai++G +KiN++t+ ++a+ ++vk     ++ ++ +dprk+++++ + ++e++++++ l+gs+ 
     CTQ26693.1 193 EMKAIAEQVkVPLVLHGGTGIADEDMRRAIACGTAKINVNTENMYAWCQQVKAIfaaDTGHDvNDPRKVIAQGLQPVREMIARRMALFGSEQ 284
                    ***************************************************6667765556669*************************986 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.051     3e+02     173     204 ..      74     106 ..      55     151 .. 0.76
   2 !   14.8   0.1   2.3e-06     0.013     148     205 ..     169     233 ..     143     244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.051
                 H-SS-BEEES---SHHHHHH.HHHTT-SEEEES CS
        ThiG 173 eakvPvivDAGigspsdaaq.amelGadavlln 204
                 +++vPv +    g++ +a++ a+  G+++++ +
  CTQ26693.1  74 HIDVPVALHLDHGTSREACEaAIAAGFSSIMFD 106
                 568888888888888888862577888888765 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 2.3e-06
                 BEEBSSSTTS----S-H......HHHHHHHHH-SS-BEEES---SHH.HHHHHHHTT-SEEEESH CS
        ThiG 148 vmPlaapiGsglGllnk......ealkiiieeakvPvivDAGigsps.daaqamelGadavllnt 205
                 v  laa++Gs +Gl +       + +k i e++kvP+++  G g +  d   a+  G+  + +nt
  CTQ26693.1 169 VDCLAAALGSTHGLYKGkarlgfTEMKAIAEQVKVPLVLHGGTGIADeDMRRAIACGTAKINVNT 233
                 5568999999999976411222256899****************996257789*****9999998 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.6e-05      0.22      65     106 ..     194     236 ..     180     249 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.6e-05
                   HHHHHHH-SSEEEEESS..SSSHHHHHHHHHCT-SEEEESHHHH CS
  His_biosynth  65 veeiaeevfipvqvGGG..Irsledveelleagadkviigtaav 106
                   +++iae+v++p+ + GG  I + + +++++  g  k+ ++t+ +
    CTQ26693.1 194 MKAIAEQVKVPLVLHGGtgIADED-MRRAIACGTAKINVNTENM 236
                   689**********98886587766.****************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2206.42
//
Query:       CTQ26694.1  [L=320]
Description: Ribokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-35  120.6   0.0    1.7e-34  119.5   0.0    1.5  1  PfkB      pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.0   9.4e-39   1.7e-34      20     301 ..      20     299 ..       2     300 .. 0.81

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 9.4e-39
                 SHTTSEE.EESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTT.SEEEEEEEEGGGGGHH CS
        PfkB  20 klegelv.evktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvded.gertivfnrgaaadlt 116
                 +++++++  ++++  s GG +aN A  l  +g +v++ig + +D +G+++++e++++gvdt+ v+ ++d  t la ++v++  g rti++   ++    
  CTQ26694.1  20 WPQENTKnFCHDFIESGGGPAANAAWLLGLWGEEVYYIGHLQQDLYGQRIIDEFAEAGVDTSQVVFSDDMITPLASVLVNRLtGSRTIITRKMQTPPSL 118
                 3345555589999*******************************************************************99*******9877665555 PP

                 HHHHHHHHHHHGCTSEEEEES...EECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEEEHHHHHHHHTSCT.HSHHHHHHH CS
        PfkB 117 keeleededlleeadllyisg...llsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkpneeElealtgekl.edieealaa 211
                 + e + ++d+l+e  +        +l ++   ++ e l++   n+      ++d  +   +    +l a +d++ ++e+ ++  ++  +  +++e++aa
  CTQ26694.1 119 TYEQKLKLDDLAERLIASE-EpvtILIDGHEAEISEYLIKKLPNARV----VMDGGS--LRASNIKLAAWTDYFVVSEHFARDYMSYRSlSTEAEIKAA 210
                 5433334444444333333.146777777777777777777777773....222222..244445678899**********987776666********* PP

                 HHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSSSTCSCC CS
        PfkB 212 lhklkakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqkkgaiaslpt 301
                 l +l++ +    ++tlG++G+++ +++  ++vp+ +  ++vDttGAGD f g+f+++   ++++  ++ fa+ +Aa++++kkg+++s+p+
  CTQ26694.1 211 LIELNKICRGEAFITLGEKGCAFLKSGMLQIVPS-WLCNAVDTTGAGDVFHGAFTYGVHYSWHIDNIILFASLTAAISIEKKGVRESMPD 299
                 ************************9999999999.88*************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2399.05
//
Query:       CTQ26695.1  [L=463]
Description: putative sugar-specific permease, SgaT/UlaA family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-125  418.9  31.8   2.1e-125  418.9  31.8    1.4  2  EIIC-GAT  PTS system sugar-specific permease component


Domain annotation for each model (and alignments):
>> EIIC-GAT  PTS system sugar-specific permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.9  31.8  1.2e-129  2.1e-125       1     396 []      10     404 ..      10     404 .. 0.98
   2 ?   -3.5   0.6      0.23   4.1e+03      85     102 ..     418     435 ..     407     448 .. 0.48

  Alignments for each domain:
  == domain 1  score: 418.9 bits;  conditional E-value: 1.2e-129
    EIIC-GAT   1 nilggpaillglivligllllkkklskaikgtlkaiiGflilslgagllvsslkpvaeafseafglkidvvwpneaivalassqelgsevalilllgli 99 
                 +i+++pa+l+gli+++gl++l+ + +k ++gtlk i+G+l+ls+gag++v +l+p++  ++  f++  +v+++neaiv++a++  lg e++ illlg+i
  CTQ26695.1  10 EIFSQPAFLMGLIAFVGLVALRSPGNKLLTGTLKPILGYLMLSAGAGVIVANLNPLGGIIEAGFNI-RGVIPNNEAIVSVAQK-MLGVETMSILLLGFI 106
                 599***************************************************************.7**************5.99************* PP

    EIIC-GAT 100 vniilarfkktttlkyifltghvmlqqalvlavvlyvlgfgnvalviigslllglywlvlpaltqkftrkitgndgvalghqqtlgyalaalvgklfgk 198
                 +n+i+ar++k    kyifltgh+ ++ a+++ +vl+++ f++++l++ig++llg + +++pa+ q++tr++t+  g+a+gh+++lgy+l+a++++  g+
  CTQ26695.1 107 FNLIIARCTK---YKYIFLTGHHSFFLACLFSAVLQAAEFQGWMLILIGGFLLGSWSAISPAIGQRYTRQVTEDGGIAMGHFGSLGYYLSAWIASRTGN 202
                 **********...************************************************************************************** PP

    EIIC-GAT 199 kekstekiklpkklgflrdnivagailmlilfllaaliagkel...sggknfvvqiltqaltfaaglviilkgvrmfveelvpafkgiseklvpgavpA 294
                   +s  + ++++k+gflrd++v++ i+m++++++  ++ag+++     ++n++++++ ++l+fa+g++i+  gvr+++++lvpaf+gis+kl+p+++pA
  CTQ26695.1 203 PANSFADTEISEKWGFLRDTTVTTGIVMFVIYFVCSAVAGSAYlstITDQNMLIFSVLTGLQFAVGVAIVYNGVRLILGDLVPAFQGISQKLIPDSIPA 301
                 ***************************************99997654459************************************************* PP

    EIIC-GAT 295 lDvavvfgfapnavtiGfllsfigqllallilillgaaiilPgvlplfflgatagvfanavggikgaiigsfisGllilflpalllpllgelgmagvtf 393
                 +D+av+f+f+p+av++Gf++sf+g+l+++l+l++lg+a+i+Pg++p+ff+g+t+gvfa + gg +g+ii+sfi G++  flpa+llp lg+lg+++ tf
  CTQ26695.1 302 VDCAVFFTFSPTAVVVGFISSFVGGLVGMLLLGGLGMALIIPGMVPHFFCGGTSGVFADKLGGKRGCIIASFIGGIFLAFLPAMLLPALGNLGFENSTF 400
                 *************************************************************************************************** PP

    EIIC-GAT 394 .dad 396
                  d+d
  CTQ26695.1 401 aDFD 404
                 9998 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.23
    EIIC-GAT  85 elgsevalilllglivni 102
                 ++g+ ++++++l+l+v +
  CTQ26695.1 418 QFGQITIYLICLALLVAL 435
                 233333344444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3559.44
//
Query:       CTQ26696.1  [L=95]
Description: putative phosphotransferase system, lactose/cellobiose-specific IIB subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-14   52.4   1.0    7.5e-14   52.2   1.0    1.2  1  PTS_IIB   PTS system, Lactose/Cellobiose specific IIB subunit
  ------ inclusion threshold ------
      0.053   13.5   0.0       0.06   13.3   0.0    1.1  1  HyaE      Hydrogenase-1 expression protein HyaE


Domain annotation for each model (and alignments):
>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   1.0   8.3e-18   7.5e-14       2      74 ..       4      71 ..       3      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 8.3e-18
                EEEEESSSHHHHHHHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEESSGGCTHHHHTTSEEEEEC CS
     PTS_IIB  2 illaCgaGmatSlmaaeklekaakelgieaegeagveleaeeiaddaDlvllapqvrvkdlarfagkpvavin 74
                i ++Cg+G+++Slmaa++++k+++elgi+a +++ +   a++++++aDl+++ ++++ +++  +++  va+i 
  CTQ26696.1  4 IRTVCGNGIGSSLMAANNVKKICDELGIKADVASVD--FANAVGEKADLYVTIKELA-NQFPAHCH--VAIIR 71
                789*********************************..99999999***********.67777777..44443 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.6e-06      0.06      37      77 ..      41      81 ..      10      87 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.6e-06
                SS-SSSSS-HCHHHHHHHCT-TTS-EEEEEETHHHHHHHHH CS
        HyaE 37 pkrfpEvsDvaVvlpEllkaFpnalraavvadreqeealae 77
                ++   E +D  V + El ++Fp+  + a++    +++++ae
  CTQ26696.1 41 ANAVGEKADLYVTIKELANQFPAHCHVAIIRSYVHKAKIAE 81
                4566799***********************98888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 817.81
//
Query:       CTQ26697.1  [L=147]
Description: PTS system, IIA component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-24   85.5   0.2    3.6e-24   85.3   0.2    1.0  1  PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransf


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.2     2e-28   3.6e-24       2     143 ..       4     144 ..       3     145 .. 0.93

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 2e-28
                 HHHCCGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTE..TCEE----SCCC.BSS-EEEEEEEEEEEE-T-GCC-CEEEEE CS
  PTS_EIIA_2   2 lltkelifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgig..ngvAiPHarlea.vkkpaiavlklkepvdfeasdgkpvklif 97 
                 ++++ li l+++++  eeaie ++ +la++++++ +  y++++l+  + ++ +i+  +g+A+PHar+e+  +++++++++  +p+ f+ ++ +pv++++
  CTQ26697.1   4 IFDPSLIALKQNISRAEEAIELAGSLLARRQICSAE--YVNEMLTVYEDFGAAIVidDGIAMPHARPEKgALQTGFSLVTTATPISFGHDEFDPVSVVI 100
                 699****************************99977..****************777*********9988******************777******** PP

                 EEE-SSCHH.HHHHHHHHHHHHCSCCHHHHHHC--SHHHHHHHHCH CS
  PTS_EIIA_2  98 llalpekdaehlkilaqLaellkdeefvekLrkakseeeilellee 143
                 ++a  ++d+ h+k+++ +a l++  + v+ L++ ++ + +l+++++
  CTQ26697.1 101 AIAGADADS-HIKMIQLIASLIE-SDIVTFLQQENDVNSVLHFIQK 144
                 *********.**********995.5788999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1288.37
//
Query:       CTQ26698.1  [L=200]
Description: putative peroxiredoxin [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-35  120.3   0.0    6.7e-35  119.7   0.0    1.3  1  AhpC-TSA       AhpC/TSA family
    7.5e-19   67.9   0.0    9.5e-19   67.6   0.0    1.1  1  Redoxin        Redoxin
    1.1e-12   47.5   0.1    2.4e-12   46.5   0.1    1.6  1  1-cysPrx_C     C-terminal domain of 1-Cys peroxiredoxin
  ------ inclusion threshold ------
      0.017   15.4   0.0      0.033   14.5   0.0    1.5  1  Thioredoxin_8  Thioredoxin-like


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   1.5e-38   6.7e-35       2     123 ..       5     139 ..       4     140 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 1.5e-38
                 TSB----EEE....STT.CEEEECHHH.TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H........SSEEE CS
    AhpC-TSA   2 gdkapdfelk....nad.getvslsdy.kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes.......lnfpll 87 
                  ++apdf++     n++  e++++++  +gkp+vlff+p+d+++vC+ el a+ k+yeef++rgvev+gvs ds++ h+++ ++         +++ ++
  CTQ26698.1   5 TRQAPDFTAAavlgNGEiVEKFNFKQHtNGKPTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVdqggigpVKYAMV 103
                 689*******88774442588999999899******************************************************9999*********** PP

                 E-TTSHHHHHTT-EETTTTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  88 sDeegkvakaygvlkeekglalratfvidkegkiry 123
                 +D ++++ kayg+ ++++g+alr++f+id++g++r+
  CTQ26698.1 104 ADIKREIQKAYGIEHPDEGVALRGSFLIDANGVVRH 139
                 **********************************98 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   2.1e-22   9.5e-19       5     136 ..       7     146 ..       3     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 2.1e-22
                 BB---E....CCEETTCEEEEEHHH.HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH........TT-TSEEE CS
     Redoxin   5 kaPdft....lplaatdgnsvslse.fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk........eglkfpvl 90 
                 +aPdft    l +  +  ++++ ++  +gk++v++f+p  f+ +C  e+++++k +e++ ++gv+vv+v+ d+ +fv ++w +          +k+ ++
  CTQ26698.1   7 QAPDFTaaavL-GNGEIVEKFNFKQhTNGKPTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDS-EFVHNAWRNtpvdqggiGPVKYAMV 103
                 68888855442.22345578999999******************************************99976.7****************999***** PP

                 E-TTSHHHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSC CS
     Redoxin  91 sDgsaaftkalGlrleedaseglrtpryavidedgkvvylevepep 136
                 +D + +++ka+G++      eg++++ +++id++g+v++  v + p
  CTQ26698.1 104 ADIKREIQKAYGIE---HPDEGVALRGSFLIDANGVVRHQVVNDLP 146
                 ************55...456779****************9887776 PP

>> 1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.1   5.3e-16   2.4e-12       1      39 [.     160     194 ..     160     195 .. 0.97

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 5.3e-16
                 HHHHHHHHT-BB-TTT.TBT-EEE---SSHHHHHHHHHH CS
  1-cysPrx_C   1 ALQladkhgvatPAnWkpGdkvivpPpateedavkryle 39 
                 ALQ++++hg+++PA+W +G++ +   +a++e +v++yl+
  CTQ26698.1 160 ALQFHEEHGEVCPAQWEKGKEGM---AASPE-GVAKYLT 194
                 9**********************...*****.*****86 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   7.4e-06     0.033      21      93 ..      52     135 ..      33     137 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.4e-06
                    HHHHHHHHHHHH..TTSEEEEEEE-SS-..HHHHHHHGGGS.-TTSEE.EE-TT-HHHHTT-S--TT......-SEEEEE-TT- CS
  Thioredoxin_8  21 pklkelyeklkk..kkkveivyvsldkk..eeefekylkkn.kkpwlsvpfddkkrnklkkkynvka......iPtlvvldkng 93 
                    ++l+++ +++++  k++ve+v vs+d++   ++++++  ++ +  ++ ++   + + +++k y++++      +   +++d ng
     CTQ26698.1  52 SELIAFDKRYEEfqKRGVEVVGVSFDSEfvHNAWRNTPVDQgGIGPVKYAMVADIKREIQKAYGIEHpdegvaLRGSFLIDANG 135
                    357777777776669***********9634566666666665559999999999999******999866666655555666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1741.66
//
Query:       CTQ26699.1  [L=193]
Description: acyl carrier protein phosphodiesterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-31  108.4   3.2    3.2e-31  107.9   3.2    1.3  1  ACP_PD    Acyl carrier protein phosphodiesterase


Domain annotation for each model (and alignments):
>> ACP_PD  Acyl carrier protein phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   3.2   1.8e-35   3.2e-31       1     104 [.      81     185 ..      81     186 .. 0.96

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 1.8e-35
      ACP_PD   1 yDhfLarnwseys.aepLeefvqrvyaqlekneealPerlqrllprmieedwLesYaelegieralqrma.rrlkrasklaeaieeleenyaeleadFl 97 
                 +DhfL+++w+++s + pL+efv+ +++q+ +  +  P+r+ +l++++++e+wLe+Y+e+++i+r+l++ma rr++ ++ l++++++l+++y++le++F+
  CTQ26699.1  81 WDHFLSQHWAQLSpDLPLDEFVRYAERQIVPILPDSPPRFVNLNQYLWSERWLERYREMDFIQRVLNGMAsRRPRLEA-LRDSWQDLDTHYDRLETQFW 178
                 9***********85789*****************************************************88888888.******************** PP

      ACP_PD  98 effpell 104
                 +f+p+++
  CTQ26699.1 179 RFYPQMM 185
                 ******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1703.51
//
Query:       CTQ26700.1  [L=175]
Description: hypothetical protein CH1034_130151 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.13   11.6   0.1       0.17   11.3   0.1    1.2  1  Zn_peptidase_2  Putative neutral zinc metallopeptidase


Domain annotation for each model (and alignments):
>> Zn_peptidase_2  Putative neutral zinc metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   9.6e-06      0.17      83     102 ..      90     109 ..      83     130 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.6e-06
  Zn_peptidase_2  83 rsvaavavAAHevGhaiqha 102
                     r + a+ vAAHevGh +  +
      CTQ26700.1  90 RRIVALRVAAHEVGHQVAGQ 109
                     6799***********88655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1571.84
//
Query:       CTQ26701.1  [L=354]
Description: S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.8e-132  440.0   0.0   5.4e-132  439.8   0.0    1.0  1  Queuosine_synth  Queuosine biosynthesis protein


Domain annotation for each model (and alignments):
>> Queuosine_synth  Queuosine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.8   0.0    3e-136  5.4e-132       2     325 .]       4     343 ..       3     343 .. 0.96

  Alignments for each domain:
  == domain 1  score: 439.8 bits;  conditional E-value: 3e-136
                      -TT-----GGGB-SS--SSGGGSEEEEEETTTTEEEEEEGGGGGGG--TT-EEEEEEEEE-S-EEEEE--.---EEEEEEEE......EEEEEE CS
  Queuosine_synth   2 sdfdfeLpeeliAqePaeeRdesrLlvldrktgeiehkrfrdlvdlLregdlLvlNdtkviparllgekektggkvevlllkel....wealvk 91 
                      +df feLpe+liA++P+ eR+++rLl ld  tg+++h +f+d++d L++gdlLv+N+t+viparl+g+k+ +ggk+evl+++ l    + a+++
       CTQ26701.1   4 TDFAFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDILDKLNPGDLLVFNNTRVIPARLFGRKA-SGGKIEVLVERMLddkrILAHIR 96 
                      79*****************************************************************996.6*********9668888****** PP

                      S-TT--TT-EEEE.....EEEEEEEETT.S-EEEEEE......HHHHHH---------.......--------------------GGGG--HHH CS
  Queuosine_synth  92 pakklkageklel.....lkaevlekeeegerlvkfe..eeleelleelGevplppyikr.....dkerYqtvyakeegsvaaPtAglhFteel 173
                      ++k +k+g++l l     +ka++l++ +     v+f+  + + e+l+ +G++plppyi+r     d+e Yqtvy +++g+vaaPtAglhF+e l
       CTQ26701.1  97 ASKAPKPGAELLLgddesIKATMLAR-HGALFEVEFNdeRPVLEILNGIGHMPLPPYIDRpdedaDRELYQTVYGTRPGAVAAPTAGLHFDEPL 189
                      *****************999999998.44667888889999*****************88888889999************************* PP

                      HHHHHHHT-EEEEEEEEE--------------------EEEEE-HHHHHHHHHHHHHT--EEEESHHHHHHHH...H...HT..SSEEE----- CS
  Queuosine_synth 174 leklkakgvevaevtLhvGlgtfrpvevedieehkmhsEryevseetaeainaakaeggrviAVGTTsvRalEsaaseegaa..kaasgetdlf 265
                      l+kl+akgve+a+vtLhvG+gtf+pv+v++ieeh+mhsE+ ev++e+++a+ aaka+g+rviAVGTTsvR+lEsaa++++ a  +++ ++t++f
       CTQ26701.1 190 LDKLRAKGVELAFVTLHVGAGTFQPVRVDSIEEHTMHSEYAEVPQEVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKDAliAPFFDDTQIF 283
                      *************************************************************************999866655679999****** PP

                      --SS---SS-SEEEEE---TT-HHHHHHHHHH-HHHHHHHHHHHHHTT--BSTTS-EEEE CS
  Queuosine_synth 266 iypgykfkvvdaLlTnfhlPkStllmlvsAfagrekileaYkeAveekYrFfsyGDamli 325
                      iypgy+++v+daL+TnfhlP+Stl+mlvsAfag++++++aYk Ave+kYrFfsyGDam+i
       CTQ26701.1 284 IYPGYQYQVIDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKVAVEQKYRFFSYGDAMFI 343
                      **********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 3000.97
//
Query:       CTQ26702.1  [L=375]
Description: queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) (Guanine insertion enzyme) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.2e-153  509.6   0.0   5.1e-153  509.3   0.0    1.0  1  TGT       Queuine tRNA-ribosyltransferase


Domain annotation for each model (and alignments):
>> TGT  Queuine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  509.3   0.0  2.8e-157  5.1e-153       2     348 ..      11     365 ..       8     367 .. 0.98

  Alignments for each domain:
  == domain 1  score: 509.3 bits;  conditional E-value: 2.8e-157
                 TEEEEEEEETTEEEEESEEEEBETTSSBTTB-HHHHH.HTTES-EEEEHHHHHHTTTHHHHHHTTHHHHHHT--S-EEEE-SHHHHHHH.E..EEESSE CS
         TGT   2 gaRlGklelphgtietPafmpvgtqgtvkgltpdelkeelgaqiilsntyhlelrpgeelvakagglhkflgwdkpiltdsggfqvfsl.k..kiteeg 97 
                 +aR+G+l  ++g++etPafmpvgt+gtvkg+tp+e+ e++gaqiil+nt+hl+lrpg+e+++ +g+lh+f++w++piltdsggfqvfsl +  kite+g
  CTQ26702.1  11 RARRGRLVFERGVVETPAFMPVGTYGTVKGMTPEEV-EATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLgDirKITEQG 108
                 49**********************************.599*************************************************8456****** PP

                 EEEE-TTTS-EEEE-HHHHHHHHHHHT-SEEE-------SS--HHHHHHHHHHHHHHHHHHHHHH......SEEEEEE--TT-HHHHHHHHHHHHHH-- CS
         TGT  98 vsfqsridGskvlltpeesieiqeklgsDiimalddvvpspaskkrveksverTlrwldrcleah......qalfgivqGglyedlreesaeelakrdf 190
                 v+f+++i+G+ ++l+pe+s+eiq +lgsDi+m++d+++p+pa+ +++++s+e++lrw++r+ +++      +alfgi+qG++yedlr  s++ l++++f
  CTQ26702.1 109 VHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSMEMSLRWAKRSRDRFdslgnkNALFGIIQGSVYEDLRDISVKGLVEIGF 207
                 **************************************************************9999****667************************** PP

                 SEEEE-SSSSSSHHHHHHHHHHHHGGGS-TTS-EEETTB-SHHHHHHHHHTT--EEEESHHHHHHHTTEEEETTEEEETTSGGGTT--SBSSSS--SHH CS
         TGT 191 dgyaigGlsvgeekeellevveavtellpedkprylmGvgtPedlleavalGvDmfdcvyptrtarngraltsegelnlknakyaedfspldegCsCyt 289
                 dgya+gGl+vge+ke++ +++e+v++++p+dkprylmGvg+Pedl+e+v++G+Dmfdcv+ptr+arng++++++g ++++nak+++d+ pld++C+Cyt
  CTQ26702.1 208 DGYAVGGLAVGEPKEDMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGHLFVTDGVVKIRNAKHKSDTAPLDAECDCYT 306
                 *************************************************************************************************** PP

                 HHH-BHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
         TGT 290 CknytraylhhllktkemlgaiLltiHNlhyylelfkriReaIkegtfeefveefarky 348
                 C+ny+raylhhl +++e+lga+L tiHNl+yy++l++ +R+aI+eg++e+fv++f++++
  CTQ26702.1 307 CRNYSRAYLHHLDRCNEILGARLNTIHNLRYYQRLMAGLRKAIEEGKLESFVTDFYQRQ 365
                 *******************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2935.99
//
Query:       CTQ26703.1  [L=110]
Description: SecYEG protein translocase auxillary subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-26   91.8   0.6    2.2e-26   91.5   0.6    1.1  1  YajC       Preprotein translocase subunit
     0.0027   18.0   0.1     0.0046   17.2   0.1    1.3  1  Orf78      Orf78 (ac78)
  ------ inclusion threshold ------
      0.016   15.2   0.0      0.021   14.8   0.0    1.2  1  TetR_C_32  Tetracyclin repressor-like, C-terminal domain
      0.017   15.0   0.1      0.022   14.7   0.1    1.2  1  MreC       rod shape-determining protein MreC
      0.043   13.4   0.0      0.059   13.0   0.0    1.2  1  PIRT       Phosphoinositide-interacting protein family
       0.15   11.6   0.0       0.19   11.3   0.0    1.1  1  DUF5385    Family of unknown function (DUF5385)


Domain annotation for each model (and alignments):
>> YajC  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.6   7.4e-30   2.2e-26       2      79 ..      22      99 ..      21     100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 7.4e-30
        YajC  2 sll.plvlifvifyfllirpqqkkqkehkemlasLkkGdeVvtigGivGkvvkvddd.evtveigesagvkikversaia 79
                sl+ +lv++ +ifyf+++rpqqk+ kehk++++s++kGdeV+t+gG+vG+v+kv ++ ++ + +++   +++ ++r+++a
  CTQ26703.1 22 SLIlMLVVFGLIFYFMILRPQQKRTKEHKNLMNSIAKGDEVLTNGGLVGRVTKVAETgYIAIALND--TTEVVIKRDFVA 99
                56625566669********************************************76468888854..59*******998 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.5e-06    0.0046      72     100 ..      22      50 ..      19      53 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.5e-06
       Orf78  72 avvcvlvllyviyYfvilrerqkssvkep 100
                 +++ +lv++ +i+Yf+ilr +qk++++++
  CTQ26703.1  22 SLILMLVVFGLIFYFMILRPQQKRTKEHK 50 
                 678999999*************9988655 PP

>> TetR_C_32  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   7.1e-06     0.021      62     104 ..      11      54 ..       5      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.1e-06
   TetR_C_32  62 llged.aedeevrlrtlsivGqclafriareavlrllgwesidp 104
                 ++g++ + +++  ++ l+++G +++f+i+r+  +r+ + +++ +
  CTQ26703.1  11 ATGAPaQGSPMSLILMLVVFGLIFYFMILRPQQKRTKEHKNLMN 54 
                 56666478999999*********************999887765 PP

>> MreC  rod shape-determining protein MreC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   7.2e-06     0.022      22      45 ..      55      78 ..      45      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.2e-06
                T--TT-EEEETTEEEEEEEEE-SS CS
        MreC 22 gvkkgmpVvsgkglVGkVtevgkn 45
                 ++kg+ V+++ glVG+Vt+v ++
  CTQ26703.1 55 SIAKGDEVLTNGGLVGRVTKVAET 78
                69*********99********875 PP

>> PIRT  Phosphoinositide-interacting protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     2e-05     0.059      91     119 ..      21      49 ..       9      58 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2e-05
        PIRT  91 lslGlmllvcGlvwvpiikkkrkqrqksl 119
                 +sl lml+v+Gl++  +i + +++r k++
  CTQ26703.1  21 MSLILMLVVFGLIFYFMILRPQQKRTKEH 49 
                 899*********98776655555544433 PP

>> DUF5385  Family of unknown function (DUF5385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.3e-05      0.19       6      49 ..      21      63 ..      16      65 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.3e-05
     DUF5385  6 liiliiiiiiilvivfllrkkkkqkeeekaggkikersdkdEVW 49
                + +++++++   +i +++  + +qk++++ ++ +++  ++dEV 
  CTQ26703.1 21 MSLILMLVVF-GLIFYFMILRPQQKRTKEHKNLMNSIAKGDEVL 63
                5555555555.56666667777778888888888888889*995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.28s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 817.90
//
Query:       CTQ26704.1  [L=604]
Description: SecYEG protein translocase auxillary subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-32  110.7   3.5    2.5e-29  101.8   0.7    3.3  4  SecD-TM1        SecD export protein N-terminal TM region
    2.7e-15   56.2  11.1    4.9e-15   55.4  11.1    1.3  1  SecD_SecF       Protein export membrane protein
    4.4e-08   32.4  12.4    4.4e-08   32.4  12.4    1.7  2  MMPL            MMPL family
    2.4e-06   26.9   0.0    5.4e-06   25.7   0.0    1.7  1  Sec_GG          SecD/SecF GG Motif
  ------ inclusion threshold ------
        2.2    6.3   8.1        3.1    5.8   8.1    1.1  1  Patched         Patched family
        3.2    7.6   7.0        6.4    6.6   7.0    1.5  1  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ


Domain annotation for each model (and alignments):
>> SecD-TM1  SecD export protein N-terminal TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.7   8.2e-33   2.5e-29      11     103 .]       1      92 [.       1      92 [. 0.98
   2 !    7.7   0.0    0.0016       4.7      43      91 ..     133     182 ..     119     189 .. 0.82
   3 ?   -3.2   0.0       3.9   1.2e+04      70      91 ..     241     262 ..     212     266 .. 0.70
   4 ?   -3.6   0.0       5.4   1.6e+04      32      65 ..     328     362 ..     319     386 .. 0.51

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 8.2e-33
    SecD-TM1  11 lilvvlligllyalPnlygedpavqisaakatlkvdeatlskveqaLkeagievksielenesllvrfestdqqlkAkdvlekaLgddyvvAl 103
                 +++vv+++gl+yalPnlygedpavqi++a++  + +e+tl +v+++L+e++i++ks++le++++l+rf++td+ql+A+++l + Lgd+yvvAl
  CTQ26704.1   1 MLVVVIVVGLIYALPNLYGEDPAVQITGARGV-AASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDTTDTQLRAREALLNVLGDKYVVAL 92 
                 689***************************98.89999999***************************************************8 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0016
    SecD-TM1  43 lkvdeatlskveqaLkeagievksielenes.llvrfestdqqlkAkdvl 91 
                  k++e+ ++++++ L+++gi++  +  e++  l ++f+++ ++ +A   l
  CTQ26704.1 133 GKLQEQNIDSLRSELRDKGIPYATVRKEDNYgLSIVFRDSAARDQAISYL 182
                 57899999*****************665554499*****99999887766 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.9
    SecD-TM1  70 enesllvrfestdqqlkAkdvl 91 
                  +++++v +   ++ ++Ak++l
  CTQ26704.1 241 GADRIVVELPGIQDTARAKEIL 262
                 3455788888888888888887 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 5.4
    SecD-TM1  32 pavqisaakatlkvdeat.lskveqaLkeagievk 65 
                 p v+is  +a+ ++ +++  +++ + +++  +e+k
  CTQ26704.1 328 PQVNISLDSAGGNIMSNFtKDNIGKPMATLFVEYK 362
                 45555444444333333302344444444444444 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4  11.1   1.6e-18   4.9e-15      13     183 ..     422     590 ..     415     595 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.6e-18
                 EEEEEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHT.T----HHHHHHHHHHTTSSSHHHHHHHHHHHH CS
   SecD_SecF  13 aekisvetvgpsvskelaekavlallialvliliyvalrFewrvalaaiialvhDviitvgvlsll.gievdlatvaalLtiiGYSvndtvvvfdrvre 110
                 +++++  t+gp+++ + +++++ a l+ lv+  i  ++ F ++++l a  al+  +i++vg++sl+ g  +++  +a++   +   v+ +v++ +r++e
  CTQ26704.1 422 IQIVEERTIGPTLGMQNIKQGLEACLAGLVV-SILFMILFYKKFGLIATSALIANLILIVGIMSLIpGATLTMPGIAGIVLTLAVAVDANVLINERIKE 519
                 6788999*****************9877765.56667788899*********************99469****************************** PP

                 HHHH--SS-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHH CS
   SecD_SecF 111 nlrkkkratlkeiinlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiaspll 183
                 +l +   +t++++i+++    ++    + +ttl+ v++l+ +g +++k+fa++  +G+++ ++++i    +++
  CTQ26704.1 520 ELSN--GRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIV 590
                 *877..89***************88889**************************9999999888886666665 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.3   3.8e+03      31      72 ..     201     238 ..     192     260 .. 0.72
   2 !   32.4  12.4   1.5e-11   4.4e-08     179     299 ..     469     590 ..     446     601 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.3
        MMPL  31 vvvlaegdealgsaaaeaavdelvdelkkdtkhvgevsdfls 72 
                  v+   +de l++ a e av++ ++ l+++ +++g + ++++
  CTQ26704.1 201 AVM---TDERLKE-AREYAVQQNINILRNRVNQLGVAEPLVQ 238
                 443...4777777.8888888888888888888888877755 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 1.5e-11
        MMPL 179 vsllaalglvlilalllglelst.fvlgl.lvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpvlaq 275
                 +s l+a  + li+  ++ +  +t +++g+  +vl++av++D ++l+  R++eel +g++ ++a+ + ++++ + ++ a +t  i ++ L ++  +++++
  CTQ26704.1 469 TSALIANLI-LIVGIMSLIPGATlTMPGIaGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVGTGAIKG 566
                 444444444.4444444444444145667357889**************************************************************** PP

        MMPL 276 vGvaialGvlvdvlivlTllPAll 299
                 ++++ ++G++ +++ ++  + A++
  CTQ26704.1 567 FAITTGIGIATSMFTAIVGTRAIV 590
                 ************998876555555 PP

>> Sec_GG  SecD/SecF GG Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.8e-09   5.4e-06       7      27 ..     109     129 ..     103     130 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.8e-09
                 --EE-TTTS-EEEEEEEE-TT CS
      Sec_GG   7 GlNLGlDFtGGthielqfdqp 27 
                 +++LGlD++GG+h+++++d++
  CTQ26704.1 109 PMKLGLDLRGGVHFLMEVDMD 129
                 89*****************97 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   8.1     0.001       3.1     671     798 ..     450     582 ..     430     592 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.001
     Patched 671 fvvallfipelit..vlvitlsivsidigviGflslW.gvdLDpismitiimsiGfsvdlsaHiayafvrsekd..dakeRvvealealgwPvvqgalS 764
                 +vv++lf+  ++    l++t+++++  i ++G++sl  g+ L    ++ i++    +vd    i  ++ ++ ++  + ++ + e        ++ + + 
  CTQ26704.1 450 LVVSILFMILFYKkfGLIATSALIANLILIVGIMSLIpGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNgrTVQQAIDEGYRGAFSSIFDANVT 548
                 689999998887611568999**************955*********************999999999888776656666666666666678******* PP

     Patched 765 TilgvlvLlfvdsymvqvFfktvvLvvvigllHg 798
                 T++ v++L+ v + +++ F+ t  + ++++++ +
  CTQ26704.1 549 TLIKVIILYAVGTGAIKGFAITTGIGIATSMFTA 582
                 **********************999999999866 PP

>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.0    0.0021       6.4      10     126 ..     466     583 ..     449     593 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0021
                     HHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHH.HHTTTCHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHCC CS
  Sterol-sensing  10 lagviivllsvasslgllaylgltltliilevlPflvlavgvdnifvlvkavqr.tsrsldeseriaealgevgpsilltsltellalllgaltd 103
                     l ++  +++ ++  +g+++++   + +++      l lav vd   ++ + +++ +s+  ++++ i e+ + +  si+   +t l+  ++ +++ 
      CTQ26704.1 466 LIATSALIANLILIVGIMSLIPGATLTMPGIAGIVLTLAVAVDANVLINERIKEeLSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVG 560
                     44455556667777888887755444444435567889999997777776666515666677********************************* PP

                     HHHHHHHHHHHHHHHHHHHHHHH CS
  Sterol-sensing 104 vpavqeFclfaavavlvdFllqi 126
                       a++ F++ + ++++++ +  i
      CTQ26704.1 561 TGAIKGFAITTGIGIATSMFTAI 583
                     ***************98877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4474.25
//
Query:       CTQ26705.1  [L=323]
Description: SecYEG protein translocase auxillary subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-69  231.1  12.2    9.7e-69  230.5  12.2    1.2  1  SecD_SecF      Protein export membrane protein
    7.6e-12   44.3   0.2    1.8e-11   43.1   0.2    1.7  1  Sec_GG         SecD/SecF GG Motif
     0.0017   16.1   9.3     0.0021   15.8   9.3    1.1  1  ACR_tran       AcrB/AcrD/AcrF family
  ------ inclusion threshold ------
      0.034   14.3   2.5      0.053   13.7   2.5    1.3  1  PIG-F          GPI biosynthesis protein family Pig-F
       0.13   11.4   0.0        0.2   10.8   0.0    1.3  1  Peptidase_M19  Membrane dipeptidase (Peptidase family M19)
        1.3    8.6   8.2        0.2   11.3   1.2    2.3  2  PRA1           PRA1 family protein


Domain annotation for each model (and alignments):
>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.5  12.2   3.3e-72   9.7e-69       4     188 ..     117     301 ..     114     302 .. 0.97

  Alignments for each domain:
  == domain 1  score: 230.5 bits;  conditional E-value: 3.3e-72
                 TTT--SSS-EEEEEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHH CS
   SecD_SecF   4 kllkevdkdaekisvetvgpsvskelaekavlallialvliliyvalrFewrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtv 102
                  +++++ ++a ++++e+vgpsv+ +la++++lal++alv+iliyv++rFewr+a +++ial+hDv+it+gvlsl++ie+dl++va+l+++iGYS+nd++
  CTQ26705.1 117 VINESTSQNAAVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVVITMGVLSLFHIEIDLTIVASLMSVIGYSLNDSI 215
                 567788899****************************************************************************************** PP

                 HHHHHHHHHHHH--SS-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHHH- CS
   SecD_SecF 103 vvfdrvrenlrkkkratlkeiinlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiasplllllke 188
                 vv dr+ren+rk +r t  ei+n sl+qtL+rt++ts ttl+v+++l+l+gg +l++f+l++l+G+ +gt ssi++as+l+l+l++
  CTQ26705.1 216 VVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLFLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGM 301
                 *********************************************************************************99875 PP

>> Sec_GG  SecD/SecF GG Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.2     6e-15   1.8e-11       2      28 .]      40      66 ..      39      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 6e-15
                HHHHC--EE-TTTS-EEEEEEEE-TTS CS
      Sec_GG  2 slftkGlNLGlDFtGGthielqfdqpv 28
                +++++G+N+GlDFtGGt+ie+  ++pv
  CTQ26705.1 40 IIGVRGFNWGLDFTGGTVIEITLEKPV 66
                799**********************98 PP

>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   9.3   7.2e-07    0.0021     314     484 ..     122     294 ..     104     311 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.2e-07
                 EEEEEEEESHHHHHHHH.HHHHHHHHHHHH..HHHHHHHH.HHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran 314 veivvvydrtefvrasi.eeVvktLleaiv..Lvvlvvfl.FLqnlratlipaiavPlsllgtfavlkalgfslNlltLfgLvlAiGlvvDdAiVvvEn 408
                  + + +  r efv  s+ ++  +t  +a++  Lv++ +++ F  ++r +  ++ia+   +++t+ vl+++ + + l     L   iG    d+iVv   
  CTQ26705.1 122 TSQNAAVKRIEFVGPSVgADLAQTGALALIaaLVCILIYVgFRFEWRLAAGVVIALAHDVVITMGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDR 220
                 555556666667776764456666665543227777777757789****9999999999***************98888889999************** PP

                 HHHHHHH.HTS-HHHHHHHH.HHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
    ACR_tran 409 ierklee.egekpleaalks.mkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltltPa 484
                 i ++ ++ ++ +p e    s +++++++l+ +  +l+++++  lfl G  G + + f+lt+++ + + +  ++ +  a
  CTQ26705.1 221 IRENFRKiRRGTPYEIFNVSlTQTLHRTLITSGTTLMVILM--LFLFG--GPILEGFSLTMLIGVSIGTASSIYVASA 294
                 *******9888998888877256799*******99999875..44444..7888889998888888777776665444 PP

>> PIG-F  GPI biosynthesis protein family Pig-F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.5   1.8e-05     0.053       7     106 ..     158     290 ..     144     312 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
       PIG-F   7 lallalrfsa.lvadpvstLlsslivla.llqvlyvvlcl.............................ekkkk.....kskkskivlallsllltlll 69 
                 l+++ +rf+  l a  v +L++ +++++ +l ++++ + l                             +   +     +  + +++++l ++l+t+  
  CTQ26705.1 158 LIYVGFRFEWrLAAGVVIALAHDVVITMgVLSLFHIEIDLtivaslmsvigyslndsivvsdrirenfrK--IRrgtpyEIFNVSLTQTLHRTLITSG- 253
                 4445556665588888888885544444044444444444778888888888888888888776654431..22345767777778888888877777. PP

       PIG-F  70 atlllaillvlfGApllthlleTlllalhlslltvlp 106
                 +tl++ ++l lfG p+l+ ++ T+l+ + + + + + 
  CTQ26705.1 254 TTLMVILMLFLFGGPILEGFSLTMLIGVSIGTASSIY 290
                 999999*******************999886655544 PP

>> Peptidase_M19  Membrane dipeptidase (Peptidase family M19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.7e-05       0.2     259     308 ..      39      88 ..      35      91 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.7e-05
                    HHT-GGGEEE---TTTTSS-BBTBSSGGGHHHHHHHHHHTTS-HHHHHHH CS
  Peptidase_M19 259 elaGidhVGlGsDfdgggelpegledvsklpnltaeLlrrgyseadieki 308
                    +++G++    G+Df+gg+     le++ +l ++ + L ++g++e +++++
     CTQ26705.1  39 AIIGVRGFNWGLDFTGGTVIEITLEKPVDLDQMRDSLQKAGFEEPQVQNF 88 
                    5788888889*********999************************9976 PP

>> PRA1  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.2   6.7e-05       0.2      80     132 ..     129     182 ..     112     192 .. 0.82
   2 ?   -0.0   2.5      0.21   6.1e+02      92     109 ..     231     265 ..     181     299 .. 0.44

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.7e-05
        PRA1  80 eplvlfgrel.sdrvvlivllvvsvlllfltgavlvllwalliglllvllHAsf 132
                 + ++++g+++ +d  +  +l++++ l+ +l+ ++  + w l++g+++ l+H ++
  CTQ26705.1 129 KRIEFVGPSVgADLAQTGALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVV 182
                 33447899999999*************************************766 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.21
        PRA1  92 r.......................vvlivllvvsvlllflt 109
                                         +      ++++l+lfl+
  CTQ26705.1 231 GtpyeifnvsltqtlhrtlitsgtT------LMVILMLFLF 265
                 1444444444443344443333322......2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       903  (0.0503653); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2378.60
//
Query:       CTQ26706.1  [L=121]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-07   31.7   0.0    3.6e-07   30.4   0.0    1.6  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    0.00054   20.7   0.0    0.00071   20.3   0.0    1.1  1  Glyoxalase_6  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0     4e-11   3.6e-07       2     126 ..       5     115 ..       4     117 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 4e-11
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSC...TSEEEEEEEEEHCHHHHHHHHHHHT CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkiee...tvhhvafialdvedvgkaldrlkea 97 
                 i+++ ++v+d++++++FY+ v+   l ++t              ++ +  +     +ap+ga++++    e     +  a i+l ++ ++++l+r+++a
  CTQ26706.1   5 INWFEIPVADMDRAVAFYEPVMQVSLRRETM-------------DCAELAVFPHQDPAPGGALAKF----EgiaPSAQGAIIYLHTDHLAATLERVASA 86 
                 78999**************************.............3333333333333333333333....1122334468******************* PP

                 TGEEEEEEECHHCTEEEEEEEEETTSEEE CS
  Glyoxalase  98 gvkvvaepgrhyfgalysfyfrDpdGill 126
                 g+ +v++p + +++ + ++ f+D  G+++
  CTQ26706.1  87 GGACVFGPLTLPNDIGTIALFTDSEGNRV 115
                 **************************987 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   7.9e-08   0.00071       6     103 ..      12     114 ..       7     117 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7.9e-08
  Glyoxalase_6   6 aadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpe..paknrvHldlavedldaevarlvalGArvlreprdgthgr.....v 95 
                   +ad+++++aF++ +++++++re      + +v p+++ a+  ++ + +   p  +   + l++++l+a+ +r+ ++G+  +  p    + +      
    CTQ26706.1  12 VADMDRAVAFYEPVMQVSLRRET-MDCAELAVFPHQDPAPGGALAKFEGiaPSAQGAIIYLHTDHLAATLERVASAGGACVFGPLTLPN-DigtiaL 106
                   789********************.666666777788888899999999999666679999999*************9987755544332.2356778 PP

  Glyoxalase_6  96 laDPeGne 103
                   ++D eGn+
    CTQ26706.1 107 FTDSEGNR 114
                   88888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 977.79
//
Query:       CTQ26707.1  [L=231]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-19   69.7   0.6    4.8e-19   69.1   0.6    1.3  1  WYL       WYL domain
    4.4e-17   61.8   0.8    7.7e-17   61.0   0.2    1.7  2  HTH_11    HTH domain
    3.2e-05   23.6   0.1    7.1e-05   22.5   0.1    1.6  1  HTH_DeoR  DeoR-like helix-turn-helix domain
     0.0018   18.3   0.0     0.0039   17.2   0.0    1.6  1  HTH_22    HTH domain
  ------ inclusion threshold ------
      0.014   15.7   0.4        5.7    7.3   0.0    2.7  2  HTH_18    Helix-turn-helix domain
      0.014   15.1   0.7      0.071   12.9   0.0    2.5  3  HTH_23    Homeodomain-like domain
      0.015   15.1   0.0      0.036   13.9   0.0    1.6  1  TetR_N    Bacterial regulatory proteins, tetR family
      0.017   15.2   0.1      0.042   14.0   0.1    1.7  1  HTH_28    Helix-turn-helix domain
      0.018   15.1   0.0      0.047   13.8   0.0    1.6  1  HTH_20    Helix-turn-helix domain
      0.035   13.9   2.0        1.1    9.1   0.0    3.1  3  HTH_10    HTH DNA binding domain
      0.035   14.1   0.1       0.12   12.5   0.1    1.9  2  HTH_29    Winged helix-turn helix
      0.043   13.4   0.2       0.07   12.7   0.2    1.4  1  HTH_24    Winged helix-turn-helix DNA-binding
       0.05   14.2   5.4       0.45   11.2   0.1    3.0  3  HTH_32    Homeodomain-like domain
      0.072   13.1   0.0       0.13   12.3   0.0    1.4  1  HTH_36    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> WYL  WYL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.6   3.7e-22   4.8e-19       2      88 ..     137     224 ..     136     230 .. 0.92

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 3.7e-22
         WYL   2 vletlaeAieerrrvefrYrspagegeertvePyglvlkngrwYLvaydekrdeirtfrldRiselelldetfe.ppdfdlakylsks 88 
                 +++ +++A++++++++++Y++ +g+ + r+v P+gl+++  rw Lva++e r+++r+frldR  e++ ++++f+   d++l+++l+k 
  CTQ26707.1 137 HFDVIHQAVSNQQVLQLHYQDESGQVTWREVLPLGLFFWGERWLLVAWCELRNDYRNFRLDRCLEVRRTERRFSeCADRSLSDFLRKI 224
                 899******************777777**********************************************8355889**999875 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.2     6e-20   7.7e-17       1      55 []       7      60 ..       7      60 .. 0.96
   2 ?   -3.4   0.0       7.8   9.9e+03      36      43 ..      84      91 ..      80      99 .. 0.71

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 6e-20
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrGYr 55
                Rl+qi+++L + r   +++ LAe+L+vS+rtv+rdI++L+ +gvp+e+e+g+GYr
  CTQ26707.1  7 RLFQIVQIL-RGRRLTTAALLAERLGVSERTVYRDIRDLSLSGVPVEGEAGSGYR 60
                89*******.777779**************************************8 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.8
      HTH_11 36 IkaLeelg 43
                I+ L+++g
  CTQ26707.1 84 IRLLKTWG 91
                67777776 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   5.6e-08   7.1e-05       1      43 [.       7      49 ..       7      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 5.6e-08
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqgl 43
                R+ qi++ l+ ++  +   l+e+lgvSe T+ RD++ L+ +g+
  CTQ26707.1  7 RLFQIVQILRGRRLTTAALLAERLGVSERTVYRDIRDLSLSGV 49
                7779**********************************98776 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     3e-06    0.0039      45      63 .]      24      42 ..      21      42 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3e-06
      HTH_22 45 ekvAekLgiSraTvYryLr 63
                 ++Ae+Lg+S+ TvYr +r
  CTQ26707.1 24 ALLAERLGVSERTVYRDIR 42
                679*************996 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0045       5.7       1      18 [.      26      43 ..      26      48 .. 0.90
   2 ?    5.6   0.2     0.015        19       8      34 ..     201     227 ..     198     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0045
                HHHHHT--HHHHHHHHHH CS
      HTH_18  1 laaalgvsrrtLqrlfkr 18
                la++lgvs+rt++r +++
  CTQ26707.1 26 LAERLGVSERTVYRDIRD 43
                89************9886 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.015
                 -HHHHHHHHHHHTSS-HHHHHHHHHHH CS
      HTH_18   8 srrtLqrlfkrvlgltpkeylrrlRle 34 
                   r+ +r+f +    + +++lr++R e
  CTQ26707.1 201 EVRRTERRFSECADRSLSDFLRKIRCE 227
                 67999********************86 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.5e-05     0.071      24      36 ..      27      39 ..      26      50 .. 0.88
   2 ?   -2.5   0.1         4   5.1e+03       3      15 ..     101     113 ..     100     120 .. 0.68
   3 ?   -3.2   0.0       6.6   8.5e+03       8      21 ..     148     165 ..     147     167 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.5e-05
      HTH_23 24 AreLgvsrrTvyr 36
                A++Lgvs+rTvyr
  CTQ26707.1 27 AERLGVSERTVYR 39
                99**********8 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4
      HTH_23   3 sereRlrilllla 15 
                 s++e+++++l  a
  CTQ26707.1 101 SAQEKMLAILPEA 113
                 6788888887655 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.6
      HTH_23   8 lrillllae....Glsvr 21 
                 +++l+l+ +      ++r
  CTQ26707.1 148 QQVLQLHYQdesgQVTWR 165
                 678888887566555555 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.8e-05     0.036      12      35 ..      16      39 ..      11      40 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.8e-05
                HHTTT--HHHHHHHHTSSHHHHHH CS
      TetR_N 12 rGydattvreIAkrAGvskgalYr 35
                rG + tt + +A+r+Gvs++++Yr
  CTQ26707.1 16 RGRRLTTAALLAERLGVSERTVYR 39
                777889*****************8 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   3.3e-05     0.042       9      31 ..      14      39 ..       7      44 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.3e-05
      HTH_28  9 laaGh...svreaArelgisrrtvyr 31
                +++G+   +++ +A++lg+s+rtvyr
  CTQ26707.1 14 ILRGRrltTAALLAERLGVSERTVYR 39
                566765757777*************9 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.6e-05     0.047      15      55 ..      11      52 ..       9      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.6e-05
                HHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTT.EE CS
      HTH_20 15 ilraLaraegltaselaerldlskntlsyHLrvLeeagL.ve 55
                i + L++++  ta+ laerl++s  t+++ +r L+  g  ve
  CTQ26707.1 11 IVQILRGRRLTTAALLAERLGVSERTVYRDIRDLSLSGVpVE 52
                89999999************************9987777666 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00084       1.1      23      45 ..      20      42 ..      17      44 .. 0.83
   2 ?    1.9   0.2      0.15     2e+02       1      14 [.      72      85 ..      72      86 .. 0.92
   3 ?    0.1   0.0      0.56   7.2e+02      39      52 ..      94     107 ..      92     108 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00084
      HTH_10 23 rvtlkeLAkelGIskstlsehLr 45
                 +t++ LA++lG+s+ t++  +r
  CTQ26707.1 20 LTTAALLAERLGVSERTVYRDIR 42
                4677889**********998777 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.15
      HTH_10  1 LTdkqlevlklAye 14
                LT k+ e+l +A++
  CTQ26707.1 72 LTTKESEALIAAIR 85
                9***********87 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.56
      HTH_10  39 tlsehLrkaeskli 52 
                 +ls+ L++a++k +
  CTQ26707.1  94 ALSQSLESAQEKML 107
                 799********976 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1     9e-05      0.12      16      40 ..      24      48 ..      10      61 .. 0.77
   2 ?   -2.9   0.0       5.6   7.2e+03       3      13 ..     149     159 ..     147     162 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9e-05
      HTH_29 16 sqiAkllglsrrtvyrwlkrfeegG 40
                + +A++lg+s+rtvyr +++    G
  CTQ26707.1 24 ALLAERLGVSERTVYRDIRDLSLSG 48
                5589************777766555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.6
      HTH_29   3 qallllaeGvs 13 
                 q+l+l+++ +s
  CTQ26707.1 149 QVLQLHYQDES 159
                 89999999876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   5.4e-05      0.07       5      42 ..       8      45 ..       4      49 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.4e-05
      HTH_24  5 drkILelLqknprisqreLAerlglSpstvnrrlkrLe 42
                 ++I ++L+    ++ + LAerlg+S  tv r ++ L 
  CTQ26707.1  8 LFQIVQILRGRRLTTAALLAERLGVSERTVYRDIRDLS 45
                5899999999999*****************99888775 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00035      0.45      36      71 ..      10      39 ..       4      40 .. 0.84
   2 ?    4.5   0.1     0.043        55      29      57 ..      73     100 ..      65     116 .. 0.75
   3 ?   -1.9   0.1       4.3   5.5e+03      16      25 ..     199     207 ..     185     228 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00035
      HTH_32 36 riiallreeprWsprqlaarlaeregvkvShstvyr 71
                +i+++lr ++  ++ +la+rl       vS++tvyr
  CTQ26707.1 10 QIVQILRGRRLTTAALLAERL------GVSERTVYR 39
                79999955656699999**99......8*******9 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.043
      HTH_32  29 lsdevrariiallreeprWsprqlaarla 57 
                 +++e +a i a++    +W+ + l++ l+
  CTQ26707.1  73 TTKESEALIAAIR-LLKTWGGEALSQSLE 100
                 5667777777777.655*******99993 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.3
      HTH_32  16 gLkdrprrgr 25 
                  L+ r+   r
  CTQ26707.1 199 CLEVRRTE-R 207
                 44433211.1 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0001      0.13      30      50 ..      25      45 ..      20      49 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
      HTH_36 30 tlakrlglsknTvsraikeLe 50
                 la+rlg+s++Tv+r i+ L 
  CTQ26707.1 25 LLAERLGVSERTVYRDIRDLS 45
                69*************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1854.37
//
Query:       CTQ26708.1  [L=294]
Description: nucleoside channel, receptor of phage T6 and colicin K [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-81  273.2  19.9    2.6e-81  273.0  19.9    1.0  1  Channel_Tsx  Nucleoside-specific channel-forming protein, Tsx
  ------ inclusion threshold ------
      0.012   16.0   1.4      0.012   16.0   1.4    1.7  2  LPAM_1       Prokaryotic membrane lipoprotein lipid attachmen


Domain annotation for each model (and alignments):
>> Channel_Tsx  Nucleoside-specific channel-forming protein, Tsx
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.0  19.9   2.9e-85   2.6e-81       2     245 .]      32     294 .]      31     294 .] 0.97

  Alignments for each domain:
  == domain 1  score: 273.0 bits;  conditional E-value: 2.9e-85
  Channel_Tsx   2 ndlkwtqfnlmksvd.elppgksddtYlElEfggrsgwvdlYGyvDvenlaesskssdk...nkgsklfmkikprlsldaltgkdlSfgpvkelYiat 95 
                  +d++++++n++ s++ +++p+ ++dtYlE+E++++++w+d+YGy+D++ +++ ++s+ k   nkgs+lfm+i+pr+s+d+lt++dlSfgp+ke+Y+a+
   CTQ26708.1  32 SDWWHQSVNVVGSYHtRFGPQIRNDTYLEYEAFAKKDWFDFYGYIDAPVFFG-GNSTAKgiwNKGSPLFMEIEPRFSIDKLTNTDLSFGPFKEWYFAN 128
                  79*************************************************6.7777777************************************** PP

  Channel_Tsx  96 dfnlgdga.sgkgennlvvGlGtdvkvpwllklglnlyakyqieny..sneeewnGyqgsvnwfkpfyffangsflsyqgyidyeFgrdekdkaank. 189
                  ++++++g+  +++++++++GlGtd+++   ++l+ln+yakyq++ny  sne+ew+Gy+++v++f+p++  ++gs lsy+g++++++g+d++d++ +  
   CTQ26708.1 129 NYIYDMGRnDSQEQSTWYMGLGTDIDTGLPMSLSLNVYAKYQWQNYgaSNENEWDGYRFKVKYFVPLTDLWGGS-LSYIGFTNFDWGSDLGDDNFYDl 225
                  ******9966788899*******************************9999***********************.*******************9999 PP

  Channel_Tsx 190 .....rtsnglasflgLywhsdrlalgyglkyyknvyqlkDg........glgqkttgighyfsvtYkF 245
                       rtsn++as+++L++++ +++++++++y++n++q++D+         +++++tg+g yf+v+Y+F
   CTQ26708.1 226 ngkhaRTSNSIASSHILALNYAHWHYSIVARYFHNGGQWADDaklnfgdgPFSVRSTGWGGYFVVGYNF 294
                  999**********************************************99*****************9 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.0   1.4   1.4e-06     0.012       1      15 [.       1      15 [.       1      15 [. 0.98
   2 ?   -2.8   0.2       1.3   1.1e+04       5      11 ..      17      23 ..      16      23 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.4e-06
      LPAM_1  1 MKKillalgalllLs 15
                MKK+lla+ga+++Ls
  CTQ26708.1  1 MKKTLLAAGAVVALS 15
                **************8 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.3
      LPAM_1  5 llalgal 11
                 +a+ga+
  CTQ26708.1 17 TFAAGAA 23
                6999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2386.47
//
Query:       CTQ26709.1  [L=39]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 303.79
//
Query:       CTQ26710.1  [L=179]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-78  262.6   3.2    1.2e-78  262.4   3.2    1.0  1  DUF3251       Protein of unknown function (DUF3251)
  ------ inclusion threshold ------
      0.044   13.7   0.1      0.072   13.1   0.1    1.3  1  LURAP         Leucine rich adaptor protein
        0.1   13.1   0.1       0.14   12.6   0.1    1.2  1  IMPa_helical  Immunomodulating metalloprotease helical domain


Domain annotation for each model (and alignments):
>> DUF3251  Protein of unknown function (DUF3251)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.4   3.2     2e-82   1.2e-78       1     159 [.      20     177 ..      20     179 .] 0.99

  Alignments for each domain:
  == domain 1  score: 262.4 bits;  conditional E-value: 2e-82
                 X----------S-------------HHHHHHHHHHHHHHH-SSSEEE-TTT---EEEE-SS-EEEEEEEEEEE-SSSEEEEEEEEESSSS----EEEEE CS
     DUF3251   1 caeqselrqlkqsvsklnqelktleqetvkieqqnaLnakskkgvyLlPgaktparlesqiGrlrvslaniepeadGtrvvLriqgesadrLpafkakv 99 
                 ca+qse+rq++qsvs+l+qe+++l+q+t+ki+qqnaLnaks++gvyLlP+aktparlesqiG+lr+s+ +i+p++dG+r++Lriqges+d+Lpaf+a+v
  CTQ26710.1  20 CAQQSEIRQMHQSVSTLSQEMTQLNQQTIKITQQNALNAKSTRGVYLLPEAKTPARLESQIGTLRMSVGSITPDGDGSRLTLRIQGESNDPLPAFTATV 118
                 9************************************************************************************************** PP

                 EEEEE-S-SSS--EEEEEEEEEEE----SSS-EEEEEEEE-S--GGG--EEEEEEEEE.. CS
     DUF3251 100 ewGqldgttekyqevnvqsqlfsapasllapsdvqielrLkgvspeqlGfvRvhdiqeqs 159
                 ++Gq++gtt++yqevnvq+ql+sapas+lapsdv+i+lrL+ v+p+++Gf+Rvhdiq+ +
  CTQ26710.1 119 ASGQITGTTHSYQEVNVQDQLISAPASTLAPSDVDIPLRLN-VTPDKVGFIRVHDIQPAA 177
                 *****************************************.****************54 PP

>> LURAP  Leucine rich adaptor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.2e-05     0.072       7      81 ..      19      95 ..      15     111 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
       LURAP  7 rrskeselkrleeklrklklelanlraidvkllqqllainegieavkWlleek..gtltsrcssltsslysldesed 81
                 ++++se +++++ + +l +e+++l    +k+ qq      +   v  l e k  + l s+ ++l  s  s++ + d
  CTQ26710.1 19 ACAQQSEIRQMHQSVSTLSQEMTQLNQQTIKITQQNALNAKSTRGVYLLPEAKtpARLESQIGTLRMSVGSITPDGD 95
                678999*****************************988888888888887777334678888888888877755544 PP

>> IMPa_helical  Immunomodulating metalloprotease helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.3e-05      0.14      13      63 ..       7      56 ..       1      69 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
                  ---GGG-EEETEE-TTSTTH.HHHHHHHHHHHHHHHHHHHTT--GGGSSS- CS
  IMPa_helical 13 tvdlskCdsnvksCdeeaklkeefkkaaesirsalealdsskidlfaeegy 63
                  +  ++ C    + C +++++  + +++++++ +++++l+++ i++ +++  
    CTQ26710.1  7 KLAIAGCLFTLTACAQQSEI-RQMHQSVSTLSQEMTQLNQQTIKITQQNAL 56
                  678899*9999*****9999.677889******************998743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1367  (0.0762452); expected 358.6 (0.02)
Passed bias filter:                      906  (0.0505327); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1340.28
//
Query:       CTQ26711.1  [L=149]
Description: transcriptional repressor of nrd genes [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-15   55.0   0.1    1.2e-14   54.6   0.1    1.2  1  ATP-cone  ATP cone domain
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.18   11.7   0.0    1.5  1  Nre_C     Archaeal Nre, C-terminal


Domain annotation for each model (and alignments):
>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.1   1.4e-18   1.2e-14       2      85 ..      50     136 ..      49     137 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 1.4e-18
                 EEE-TTS-EEE--HHHHHHHHHHHHHH...-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHH CS
    ATP-cone   2 kViKRdGtvepfdvekIkraiekAceg...seeeideiaeeveaevrkrlrdgisteeIqdlvektliehpdyavaaayilyrnlrk 85 
                 +V+K +  +epf+++k+++   kA+e+   s ++++  ++ +  ++r  +++++ ++ I++lv+++l++ +++a+++++++yr + +
  CTQ26711.1  50 RVVKSNDVREPFNEDKLRSGMLKALEKrpvSADDVEMAVNHIKTHLRGTGEREVASKMIGNLVMEQLKKLDKVAYIRFASVYRSFED 136
                 69*************************999999999999********************************************9976 PP

>> Nre_C  Archaeal Nre, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.1e-05      0.18      55     102 ..      66     113 ..      43     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.1e-05
       Nre_C  55 vReavrkalekkpkefesleealeevseklklplkkllkkskllkelk 102
                 +R ++ kalek+p +++++e a+++++++l+   ++ ++++ + + ++
  CTQ26711.1  66 LRSGMLKALEKRPVSADDVEMAVNHIKTHLRGTGEREVASKMIGNLVM 113
                 789999************************976655555444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1102.77
//
Query:       CTQ26712.1  [L=367]
Description: fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino) uracil reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-60  203.2   0.0    4.7e-60  202.8   0.0    1.1  1  RibD_C           RibD C-terminal domain
    9.6e-22   76.8   0.2    1.5e-21   76.2   0.2    1.3  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    4.1e-12   46.0   0.0    6.6e-12   45.3   0.0    1.4  1  MafB19-deam      MafB19-like deaminase
     0.0032   17.3   0.0      0.011   15.6   0.0    1.8  1  Inv-AAD          Invertebrate-AID/APOBEC-deaminase
  ------ inclusion threshold ------
      0.023   14.3   0.0      0.043   13.4   0.0    1.4  1  Acyltransferase  Acyltransferase
      0.056   13.3   0.0       0.18   11.7   0.0    1.8  1  APOBEC_N         APOBEC-like N-terminal domain


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.8   0.0   1.6e-63   4.7e-60       1     200 []     147     362 ..     147     362 .. 0.97

  Alignments for each domain:
  == domain 1  score: 202.8 bits;  conditional E-value: 1.6e-63
                 -EEEEEEEEETTSBSSCTTSSGCTSS-HHHHHHHHHHHHTSSEEEEEHHHHHHHT--SS--SSCHSCHH.HTT.G...SS-EEEEEETTS-S-TTSHHH CS
      RibD_C   1 pyvilklavSlDGklaaaggeskwitgeearadvhelraeadailvGrgtvladnpsltvrwvkkreae.adaea...rqpvrvVvdstlrvpldakvl 95 
                 p+v+lkl +SlDG++a+a+ges+wit++ ar+dv++lra+++ail ++ tvlad+p+ltvrw + ++ + a + +   rqp+rvV+ds++rv+++++++
  CTQ26712.1 147 PWVQLKLGASLDGRTAMASGESQWITSPHARRDVQRLRAQSHAILTSSATVLADDPALTVRWQELSADTqALYPEenlRQPLRVVIDSQNRVTPEHRIV 245
                 8****************************************************************988877777789********************** PP

                 HSSS-EEEEESSCSCHHHHHHCC...E.....SE-HHHHHHHHHHTT--EEEEEETHHHHHHHHHTTT-SEEEEEEESCE--TTSBCSSSSST-SS... CS
      RibD_C  96 tddaptlvatteeadkekveklk...v.....rvdlkelleeLkergirsllveGGatLagsllraglvDelrlyiaPkllGgagktlfdgegfka... 183
                 ++  +tl+a+ +++++++ e  +   v     ++dl+ l++ L +++i+s++ve+GatLag+ll+aglvDel++yiaPkllG+a++ l+   g+++   
  CTQ26712.1 246 QQAGETLFARLRADERQWPESARtllVpehngHLDLVLLMMLLGKQQINSVWVEAGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEElsq 344
                 *99********************76638889***************************************************************9999* PP

                 .EEEEEEEEEEETTEEEE CS
      RibD_C 184 .lklklvksealgegvvl 200
                  +++k+++++++g++v+l
  CTQ26712.1 345 aPHFKFNEIRQVGPDVCL 362
                 ***************996 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.2   4.9e-25   1.5e-21       3     100 ..       2      99 ..       1     100 [. 0.93

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 4.9e-25
                      HHHHHHHHHHHHHHHHH..TTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHHTSSCETTEEEEEEE--BHH......HHHH CS
  dCMP_cyt_deam_1   3 kdekllelalkaakeaq..kcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaaknggsklegatlyvtlePCsm......Caka 88 
                      +de ++  alk+a + +  +++n++VG+vivk+gei+++g++ ++ g    +HAEv A++ a++    k +gat yvtlePCs+      C++a
       CTQ26712.1   2 QDEMYMARALKLAARGRftTHPNPNVGCVIVKDGEIVGEGFHYRA-GE---PHAEVHALRMAGE----KARGATAYVTLEPCSHhgrtppCCDA 87 
                      5899**************9*************************6.55...5**********85....5679***********99********* PP

                      HHHHT-SEEEEE CS
  dCMP_cyt_deam_1  89 iiqsgikkvvvg 100
                      +i +g+++vv +
       CTQ26712.1  88 LIAAGVSRVVAA 99 
                      **********87 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   2.2e-15   6.6e-12       4     138 .]       4     143 ..       1     143 [. 0.79

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 2.2e-15
  MafB19-deam   4 ekafrkalaeveka..tkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCd......mCagaivqag 93 
                  e +++ al+++  +  t   +  +g+vivkd+++++ g   +        HaE++al+ A       ++ +at yvtlepC+      +C  a++ ag
   CTQ26712.1   4 EMYMARALKLAARGrfTTHPNPNVGCVIVKDGEIVGEGFHYRA----GEPHAEVHALRMAG-----EKARGATAYVTLEPCShhgrtpPCCDALIAAG 92 
                  566666666665541133334579***************9444....789**********4.....446788*********6444444799******* PP

  MafB19-deam  94 lkklvygagnpks......lnkLkvkekngrvelveddckeilkgffkklr 138
                  + ++v ++++p+       l +L+   +     l+ ++ +++ kgf+k++r
   CTQ26712.1  93 VSRVVAAMQDPNPqvagrgLYRLQQAGIEVSHGLMMNEAEALNKGFLKRMR 143
                  *********999899999999999888888888888999999999999876 PP

>> Inv-AAD  Invertebrate-AID/APOBEC-deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.6e-06     0.011      54     121 ..      66     129 ..      28     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.6e-06
     Inv-AAD  54 tvlYttmepCskRlsGnlpCveRilklkeaiktvyvGvkePekfvaenkgrkkleeagievvhvegle 121
                 +  Y t+epCs+      pC++ +++    + +v   +++P+  va  +g  +l++agiev h   ++
  CTQ26712.1  66 ATAYVTLEPCSHHG-RTPPCCDALIAA--GVSRVVAAMQDPNPQVA-GRGLYRLQQAGIEVSHGLMMN 129
                 567*******9863.356899999865..68999*********997.589***********9976665 PP

>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.4e-05     0.043       9      53 ..     262     305 ..     254     331 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
  Acyltransferase   9 nlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkell 53 
                      + pe+ + +lv+ H+ +lD +ll++ll k+++ + v++ a++ l+
       CTQ26712.1 262 QWPESARTLLVPEHNGHLDLVLLMMLLGKQQI-NSVWVEAGATLA 305
                      56778999**********************96.899998888776 PP

>> APOBEC_N  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.9e-05      0.18      41      98 ..      45      95 ..      18     160 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.9e-05
                E-..SSTBCHHHHHHHHHHHHT--.TTEEEEEEEEESS-S-HH.......HHHHHHHHHHH CS
    APOBEC_N 41 qsgaaaskHaEelflediedqelrepkkkyeitlYvswsPChessde...Caeklaaflkk 98
                ++g     HaE   l+      +   +k++  t Yv++ PC ++  +   C   +aa  ++
  CTQ26712.1 45 RAGE---PHAEVHALRM-----A--GEKARGATAYVTLEPCSHHGRTppcCDALIAAGVSR 95
                4444...7888876663.....2..3788999***********88889*554445555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2761.09
//
Query:       CTQ26713.1  [L=156]
Description: 6,7-dimethyl-8-ribityllumazine synthase (Lumazine synthase)(riboflavin synthase beta chain) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-55  186.9   0.8    1.6e-55  186.8   0.8    1.0  1  DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase


Domain annotation for each model (and alignments):
>> DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.8   0.8   9.2e-60   1.6e-55       2     140 ..      13     151 ..      12     152 .. 0.98

  Alignments for each domain:
  == domain 1  score: 186.8 bits;  conditional E-value: 9.2e-60
                    EEEEEEEESTTHHHHHHHHHHHHHHHHHCT.TSSCCEEEEEESSCCCHHHHHHHHCTSTT-.SEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHHH CS
  DMRL_synthase   2 lriaiVvarfneeitdkllegaldelkeag.vaeenidvvtVPGafElplaakklaesskyldavialGvvirGetphfeyvaeavskglmrvsld 96 
                    +r+ai  arfn++i d+llega+d+lk+ g v++eni+vv+VPGa+Elplaa  la+++ky davialG+virG+t hfeyva  +s+gl++v+ d
     CTQ26713.1  13 ARVAITIARFNNFINDSLLEGAIDALKRIGqVKDENITVVWVPGAYELPLAAGALAKTGKY-DAVIALGTVIRGGTAHFEYVAGGASNGLAHVAQD 107
                    79****************************99*************************8777.********************************** PP

                    CTS-EEEEEEEESSHHCCHHCCTSTCCCHHHHHHHHHHHHHHHH CS
  DMRL_synthase  97 tgvPvifgvltvdteeqaleraggkagnkGeeaaeaalemanll 140
                    +++Pv+fgvlt++++eqa+erag+kagnkG+eaa +alem+n+l
     CTQ26713.1 108 SEIPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVL 151
                    *****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1118.82
//
Query:       CTQ26714.1  [L=139]
Description: transcription antitermination protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-36  123.0   0.1    1.1e-35  122.8   0.1    1.0  1  NusB      NusB family


Domain annotation for each model (and alignments):
>> NusB  NusB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   0.1   6.2e-40   1.1e-35       1     133 [.       7     131 ..       7     132 .. 0.92

  Alignments for each domain:
  == domain 1  score: 122.8 bits;  conditional E-value: 6.2e-40
                 HHHHHHHHHHHHHHHHH-S-.HHHHHHHHHHHT-.......--HHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT--GGGS-HHHHHHHHHHHHHHTTS- CS
        NusB   1 skaRelalqalyqveinked.eeekeailqealnklleeedldeedkafltelvkgvlrnleelDeliekllknwplerlskvdraiLrlavyellyld 98 
                 ++aRe+a+qaly+++++++d ++++ ++l e+          ++ d  +++el+ gv +n  +lD l++ +l +++le+l++v++a+Lr+a++el  +d
  CTQ26714.1   7 RRARECAVQALYSWQLSHNDiADVEYQFLAEQDV--------KDVDVLYFRELLSGVATNSAYLDGLMKPYL-SRQLEELGQVEKAVLRIALFELSKRD 96 
                 589***********88777776666666666555........99**************************99.************************** PP

                 SSHHHHHHH.HHHHHHHHS-HHHHHHHHHHHHHHH CS
        NusB  99 dvPakvaineavelakkygdeksakFvNgVLrkva 133
                 dvP+kvainea+elak++g e+s+kFvNgVL+k+a
  CTQ26714.1  97 DVPYKVAINEAIELAKTFGAEDSHKFVNGVLDKAA 131
                 ********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1113.84
//
Query:       CTQ26715.1  [L=323]
Description: thiamin-monophosphate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-20   74.0   0.0    2.2e-20   73.1   0.0    1.5  1  AIRS      AIR synthase related protein, N-terminal domain
    5.7e-10   39.5   0.0      8e-10   39.1   0.0    1.2  1  AIRS_C    AIR synthase related protein, C-terminal domain


Domain annotation for each model (and alignments):
>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   2.5e-24   2.2e-20       1      94 []      29     138 ..      29     138 .. 0.93

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 2.5e-24
                 SSSE.........EEEEEEEEE.EECCTCCCC........HHHHHHHHHHHHHHTTTEEEEEEEEEEEEC.....HHHHHHHHHHHHHHHTT-EEEEEE CS
        AIRS   1 dDaa.........vvvttdshnrpvlvepvhf........iGakavavnlsDlaamGArPlalllslalp.....wleevvrglaeaaeelgvplvgGd 77 
                 dD+a         ++++td     +lv++ hf        +++ka+avnlsDlaamGA+P +l+l+l+lp     wle++ ++l   ++ ++++l+gGd
  CTQ26715.1  29 DDCAllhipekktLAISTD-----TLVAGNHFlpdidpadLAYKALAVNLSDLAAMGAEPAWLTLALTLPevdevWLEAFSDSLFVQLDYYDMQLIGGD 122
                 8***6655555555*****.....*************************************************************************** PP

                 EEEESSEEEEEEEEEEE CS
        AIRS  78 tsfsneptisvtavGlv 94 
                 t++++ +++++++ G v
  CTQ26715.1 123 TTRGP-LSMTLGIHGFV 138
                 ***98.88999988875 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   8.9e-14     8e-10       1     147 [.     150     298 ..     150     304 .. 0.64

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 8.9e-14
                 STTEEEEEEETSSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHH...HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHH CS
      AIRS_C   1 kpGdvliltgslGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaal...kglvkaahDvTgGGLlgalaemapasgvgaeidldkvpi 96 
                 kpGd +++tg+ G  +ag++  +  l+ ++        +d ll  ++++ +++  +    ++l+++a D+++ GL+++l  +++asg+ga+idld++p 
  CTQ26715.1 150 KPGDWIYVTGTPGDSAAGLAVLQNRLTVDEPS-----DADYLLA-RHLRPMPRVLQGqalRDLATSAIDLSD-GLISDLGHILKASGCGARIDLDAMPY 241
                 79****************77666666666654.....3333333.233333332222245689*********.8************************* PP

                 HHHHH...HHHHHHHC....STTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEE CS
      AIRS_C  97 fdele...splemlls....ensGrllvavppeeadavlaileeeglpeaavIGevta 147
                  d +    +p+++l+      +    l++ +pe +  +l+++  +    ++ IG++ +
  CTQ26715.1 242 SDAILrqvEPEQALRWalagGEDY-ELCFTVPELNRGALDVALGHLGARFTCIGQIAP 298
                 999986664444444344432233.344444444444444444332235666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2429.32
//
Query:       CTQ26716.1  [L=167]
Description: phosphatidylglycerophosphatase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-53  178.5   8.9      8e-53  178.3   8.9    1.0  1  PgpA      Phosphatidylglycerophosphatase A
  ------ inclusion threshold ------
      0.068   13.4   0.2       0.12   12.6   0.2    1.3  1  TfoX_N    TfoX N-terminal domain
       0.35   11.2   7.8       0.33   11.3   2.0    2.3  2  DUF4281   Domain of unknown function (DUF4281)


Domain annotation for each model (and alignments):
>> PgpA  Phosphatidylglycerophosphatase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.3   8.9   1.3e-56     8e-53       2     142 ..      18     158 ..      17     159 .. 0.93

  Alignments for each domain:
  == domain 1  score: 178.3 bits;  conditional E-value: 1.3e-56
                 HHHHHHHHTT......--HHHHHHHHHHHTT.HHHHH.HHHHHHHHHHHHHHHHHHHHHT-S-HHT-TT--HHHHTTHHHHH.........TTHHHHHH CS
        PgpA   2 ellatlfgsGllpvaPgtvgslaalllalllllleslslllllilllflvGiwackktekelgekDpgeiviDEvvgqwiallllpa.tllalllafil 99 
                 +llat+fgsGl+pv+Pgt+gslaa+++++l+ ++  ++l+ l++++++ +G+++c++t+k++g +D+g+iv+DE+vg+wi+l++lp+  +++++++f++
  CTQ26716.1  18 HLLATGFGSGLSPVVPGTMGSLAAIPFWYLM-TFLPWQLYSLVVMMSICIGVYLCHRTAKDMGTHDHGSIVWDEFVGMWITLMALPTmDWQWVAAGFVI 115
                 89************************99987.566664555799**************************************99987477778999*** PP

                 HHHHHHS--THHHHTSSS.-S---TTHHHHHHHHHHHHHHHHH CS
        PgpA 100 FrlfDivKpgpigwldrklkgglgvmlDDllAgiaaalvlali 142
                 Fr+fD++Kp+pi+w+dr+++gg+g+m+DD++Ag+++a vl++i
  CTQ26716.1 116 FRIFDMWKPWPIRWFDRNIHGGMGIMVDDIVAGVISAGVLYVI 158
                 *************************************999876 PP

>> TfoX_N  TfoX N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2     2e-05      0.12      12      37 ..     132     157 ..     130     160 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2e-05
                 EEETTEEEEEETTEEEEEEETTEEEE CS
      TfoX_N  12 rrmFGgyglfvdglmfalvsdgelyl 37 
                 r+  Gg+g++vd+++ +++s g ly+
  CTQ26716.1 132 RNIHGGMGIMVDDIVAGVISAGVLYV 157
                 7778*********************7 PP

>> DUF4281  Domain of unknown function (DUF4281)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.0   5.6e-05      0.33       5      46 ..      36      72 ..      35      86 .. 0.70
   2 ?    3.2   0.3     0.018   1.1e+02      85     100 ..      86     101 ..      83     119 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.6e-05
     DUF4281  5 lanllvlpfwllmilaPrakvtrrvmesllpflvlallYlvl 46
                +++l+++pfw lm ++P +++ + v    +++ +++ +Yl+ 
  CTQ26716.1 36 MGSLAAIPFWYLMTFLP-WQLYSLV----VMMSICIGVYLCH 72
                67899************.6666665....3445555555554 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.018
     DUF4281  85 LafDLfvgrwiyldgl 100
                 +++D fvg+wi l +l
  CTQ26716.1  86 IVWDEFVGMWITLMAL 101
                 6788888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1331.25
//
Query:       CTQ26717.1  [L=324]
Description: aldoketo-oxidoreductase, NADP-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-76  255.3   0.0    8.2e-76  255.0   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.0   0.0   4.6e-80   8.2e-76       1     290 [.      15     312 ..      15     315 .. 0.93

  Alignments for each domain:
  == domain 1  score: 255.0 bits;  conditional E-value: 4.6e-80
                   .EEEE-SSS-ST.......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHH CS
  Aldo_ket_red   1 elglGtwqlgsk......eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresle 91 
                   +l+lG +++g +      ++ ++e++  l+++a+e GinffDtA++Y +g+see++G+al +  ++r+ev++atKv+   ++  +gls+++i +s++
    CTQ26717.1  15 RLCLGCMTFGEPdrgrhaWTLPEESSRPLIQHAIEGGINFFDTANSYSDGSSEEIVGRALRD-FARRDEVVVATKVYHQVGDLAEGLSRAQILRSID 110
                   59********99**************************************************.99******************************** PP

                   HHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT- CS
  Aldo_ket_red  92 eslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeegllelckkkgv 184
                   +sl+rLg dyvDll++Hr+d+++p iee+l+al+e+vk+Gk+r+iG S+  ++q  +a    ++ +  ++v+ q +ynl  ++ee+++l+lc+ +gv
    CTQ26717.1 111 DSLRRLGMDYVDLLQIHRWDYTTP-IEETLEALDEVVKAGKARYIGASSMHARQFAQAlalqQQNGWARFVTMQDHYNLIYREEENEMLPLCQRNGV 206
                   ************************.*******************************999**999********************************* PP

                   EEEEBSTTGGGTTGTTTSS--.-SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG-- CS
  Aldo_ket_red 185 pliaysplggGlltgkyqsee.dkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelk 280
                   ++i++spl++G lt+ + + + +  ++e  k+l +    +   + a +l ++a+e + s aq+al+++ls+p+v  +i+g+s++eql+d l+a++l+
    CTQ26717.1 207 AVIPWSPLARGRLTRPWGETTaRLVSDEFGKSLYS-TSEENDAQIAGNLADVAEELDASRAQVALAWLLSKPGVAAPIIGPSRQEQLDDLLQAVDLT 302
                   **************877655504444444444422.444455677899************************************************* PP

                   --HHHHHHHH CS
  Aldo_ket_red 281 lseeevaeld 290
                   ls+e++++l+
    CTQ26717.1 303 LSPEQIDKLE 312
                   ******9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2673.33
//
Query:       CTQ26718.1  [L=620]
Description: 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-115  385.2   0.0   4.5e-115  383.6   0.0    1.7  2  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
    3.2e-40  137.7   0.0    5.4e-40  137.0   0.0    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
      7e-27   93.8   0.4    1.6e-26   92.6   0.0    1.8  2  Transketolase_C  Transketolase, C-terminal domain
    9.9e-06   25.4   0.0    3.5e-05   23.6   0.1    1.9  3  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
    3.2e-05   23.0   0.2    5.4e-05   22.3   0.2    1.2  1  E1_dh            Dehydrogenase E1 component
     0.0035   16.4   0.0      0.012   14.5   0.1    1.8  3  Transketolase_N  Transketolase, thiamine diphosphate binding 


Domain annotation for each model (and alignments):
>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.6   0.0  1.5e-118  4.5e-115       2     273 .]      12     282 ..      11     282 .. 0.99
   2 ?   -1.4   0.1      0.36   1.1e+03      40      71 ..     376     410 ..     362     418 .. 0.70

  Alignments for each domain:
  == domain 1  score: 383.6 bits;  conditional E-value: 1.5e-118
  DXP_synthase_N   2 ekinspedlkklskeeleelaeelrefliesvsktggHlasnLgvveLtlalhyvfdtpkDklvwDvgHqaYvhKiltgRkdkfktlrqkgGlsg 96 
                       ++s+++l+ l ke+l++l++elr++l++svs+++gH+as+Lg+veLt+alhyv++tp D+l+wDvgHqaY+hKiltgR+dk+ t+rqk Gl+ 
      CTQ26718.1  12 ALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYNTPFDRLIWDVGHQAYPHKILTGRRDKIGTIRQKSGLHP 106
                     568999***************************************************************************************** PP

  DXP_synthase_N  97 fpkrsEseyDafeagHsstsisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNemsisknvGalskylsklls 191
                     fp r EseyD++++gHsstsisa+ G+a+a+ ++++++++v+viGDga+t+Gmafea+n++g++k +llv+lNdNemsis+nvGal+++l++lls
      CTQ26718.1 107 FPWRGESEYDVLSVGHSSTSISAGIGVAIAAAKEDKQRRAVCVIGDGAITAGMAFEAMNHAGDIKPDLLVVLNDNEMSISENVGALNNHLAQLLS 201
                     *********************************************************************************************** PP

  DXP_synthase_N 192 skayeklkkevkkllkkigkklaelakklkeslkellvpgtlfeelgfkYlGpidGhdleelikvleevkklkgpvllhvvt 273
                      k y++l++ +kk+++ + ++++el+k+++e++k+++vpgtlfeelgf+Y+Gp+dGhd+  l+++l+++++lkgp++lh++t
      CTQ26718.1 202 GKLYSTLREGGKKVFSGV-PPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLVSTLKNMRDLKGPQFLHIMT 282
                     ***************998.99***********************************************************98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.36
  DXP_synthase_N  40 lasnLgvveL..tlalhyvf.dtpkDklvwDvgHq 71 
                     +a++L++ +    +a++  f +   D++++Dv+ q
      CTQ26718.1 376 FAAGLAIGDYkpVVAIYSTFlQRAYDQVIHDVAIQ 410
                     5555555444115899988845678*******988 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.0   1.8e-43   5.4e-40       4     174 ..     320     480 ..     318     482 .. 0.98

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 1.8e-43
                   EHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHHHCHH CS
  Transket_pyr   4 awrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqairsge 100
                   +++k++++ l e +++d+++++i+ ++++g++ v++++++++   r++d+ i+Eq++++fa+G+a+ +  +++v+a++++F++    +a++++++++
    CTQ26718.1 320 SYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSKKFPD---RYFDVAIAEQHAVTFAAGLAIGD--YKPVVAIYSTFLQ----RAYDQVIHDV 407
                   7899**************************************...***********************..9************....********** PP

                   HHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSE CS
  Transket_pyr 101 akgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksl 174
                   a +kl+v   ++r++i vg dG +hq+a++++flr+ip++ v++Psd++e++++l++ ++++ ++P+++r+p+++
    CTQ26718.1 408 AIQKLPVLfAIDRAGI-VGADGQTHQGAFDLSFLRCIPDMVVMTPSDENECRQMLYTGYHYS-DGPCAVRYPRGS 480
                   ****************.*******************************************86.6********975 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.3   6.8e+03       6      16 ..     141     151 ..     127     168 .. 0.54
   2 !   92.6   0.0   5.3e-30   1.6e-26       1     124 []     495     611 ..     495     611 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.3
                      EETTSSEEEEE CS
  Transketolase_C   6 lregkdvtlva 16 
                      +++ + v++++
       CTQ26718.1 141 DKQRRAVCVIG 151
                      33333333333 PP

  == domain 2  score: 92.6 bits;  conditional E-value: 5.3e-30
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdglda 94 
                      gk++++r+g++++++++G+ ++ea ++a++L+     a++vd+r+vkplD+++il+++ +++ lv++ee++++gG gs v+++l+    ++  +
       CTQ26718.1 495 GKGVVKRQGEKIAILNFGTLLPEAAAVADKLN-----ATLVDMRFVKPLDTALILQLAGEHDALVTLEENAIMGGAGSGVNEVLMA---HRRAV 580
                      899****************************5.....99***********************************************...9**** PP

                      EEEEEEE-SS.SSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  95 pvkrvggpdv.iepgsaeelekafgldaeki 124
                      pv+++g+pd  i++g++ee+ + +glda+ i
       CTQ26718.1 581 PVLNIGLPDYfIPQGTQEEIRADLGLDAAGI 611
                      ***************************9987 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   1.2e-08   3.5e-05      29      84 ..     126     183 ..     102     198 .. 0.78
   2 ?   -3.4   0.0       2.4   7.3e+03     126     153 .]     253     280 ..     241     280 .. 0.75
   3 ?   -3.5   0.0       2.6   7.8e+03      18      52 ..     360     391 ..     353     392 .. 0.53

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.2e-08
                   -TTTHHHHHHHHHHHSTTSEEEEEEEHHH..HHHTGGGHHHHHHTT-SEEEEEEE-SB CS
  TPP_enzyme_C  29 tmGyglpaAiGaklakpdrevvaivGDGg..flmilqelatavrrnlpitvvvlnNeg 84 
                   ++  g+++Ai+a+  +++r+ v+++GDG+    m ++++ +a   + +++vv+ +Ne+
    CTQ26718.1 126 SISAGIGVAIAAAKEDKQRRAVCVIGDGAitAGMAFEAMNHAGDIKPDLLVVLNDNEM 183
                   3334555555555555679*********9756778******************99986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.4
                   EESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C 126 rvekadveeleealkealekkgpaliev 153
                    v+ +dv  l  +lk +++ kgp ++++
    CTQ26718.1 253 PVDGHDVLGLVSTLKNMRDLKGPQFLHI 280
                   5677788889999999999999999986 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.6
                   SSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEE CS
  TPP_enzyme_C  18 prsyltsgglgtmGyglpaAiGaklakpdrevvai 52 
                   p++y++ ++   +  ++ +A G+++ +  ++vvai
    CTQ26718.1 360 PDRYFDVAIAEQH--AVTFAAGLAIGD-YKPVVAI 391
                   5666664444444..444555555542.2477776 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.2   1.8e-08   5.4e-05     104     166 ..     124     186 ..     112     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.8e-08
                 TTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETT CS
       E1_dh 104 gaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygis 166
                 ++  + + G+a+aa  e+k++ a+++iGDgA   G ++ea+n a   k   + v + N+  is
  CTQ26718.1 124 STSISAGIGVAIAAAKEDKQRRAVCVIGDGAITAGMAFEAMNHAGDIKPDLLVVLNDNEMSIS 186
                 45555566************************************9999999999999988887 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.95   2.8e+03       7      39 ..      33      64 ..      30      77 .. 0.80
   2 !   14.5   0.1   4.2e-06     0.012     147     191 ..     146     189 ..     113     198 .. 0.86
   3 ?   -3.5   0.0       1.3   3.9e+03     203     248 ..     243     287 ..     242     301 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.95
                     HHHHHHHHHHHHHHT-S--HHHHHHHHHHHHHH CS
  Transketolase_N  7 naiRvLavDavekaksGhPGaplgladiaevlf 39
                     + +R   +D+v++  sGh  + lg ++++ +l+
       CTQ26718.1 33 DELRRYLLDSVSR-SSGHFASGLGTVELTVALH 64
                     5677777899976.699*999999999988875 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 4.2e-06
                      EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTEEG CS
  Transketolase_N 147 tyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidGet 191
                        +++gDg +  G++ ea++ ag +k + L+vl  dn++si  ++
       CTQ26718.1 146 AVCVIGDGAITAGMAFEAMNHAGDIKPDLLVVLN-DNEMSISENV 189
                      56899*********************99888885.5888887666 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.3
                      HHHTT-EEEEETTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTT CS
  Transketolase_N 203 feaygWhvievedgedveaikaaieeakaekdkPsliklrtviGyg 248
                      fe  g++ i   dg+dv  + + +++ +   + P ++++ t  G g
       CTQ26718.1 243 FEELGFNYIGPVDGHDVLGLVSTLKNMRDL-KGPQFLHIMTKKGRG 287
                      566777888888999999999999998887.669999988888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4885.14
//
Query:       CTQ26719.1  [L=299]
Description: geranyltranstransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-58  195.9   0.1    7.5e-58  195.6   0.1    1.1  1  polyprenyl_synt  Polyprenyl synthetase
  ------ inclusion threshold ------
      0.032   13.5   0.1       0.14   11.4   0.0    1.8  2  UbiA             UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.6   0.1   8.4e-62   7.5e-58       4     239 ..      32     267 ..      29     284 .. 0.88

  Alignments for each domain:
  == domain 1  score: 195.6 bits;  conditional E-value: 8.4e-62
                      HHHHHHHHHHSSS--HHHHHHHHHHHHHSCGHHHHHHHHHHHHHHHHHHHHHHHHHHH..HTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHH CS
  polyprenyl_synt   4 leealeylveagGKrlRpllvllaaealkeeeeelekaavlawivellhaasLvhDDi..mDdsetRRGqpcahrlvGnklAindgdfllaraf 95 
                      l ea++y    gGKrlRp lv ++ e++++ +    ++ + a++ve++ha+sL+hDD+  mDd+++RRG p++h ++G+++Ai++gd+l+++af
       CTQ26719.1  32 LVEAMHYGALLGGKRLRPFLVYATGEMFGVCR---TTLDAPAAAVECIHAYSLMHDDLpaMDDDDLRRGLPTCHIKFGEANAILAGDALQTLAF 122
                      5689999999*******************555...567899***************************************************** PP

                      HHHHHHH.....STT.HHHHHHHHHHHH..HHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHH.HHHHHHHHHH CS
  polyprenyl_synt  96 ellaklf.....eks.lellelfsevll..qtveGqlldleeekdddlskfsleeyleivkyKTaylfalpvalaallagasd.eelealkdig 180
                       +l++       +++ l +++ +++++    ++ Gq+ldl++e  ++++   l+  ++i+++KT++l++++v+++al ag    ++l al++++
       CTQ26719.1 123 SILSDAPmvdvpDRDrLAMVSELAQASGvaGMCGGQALDLQAE-GQQVD---LQALERIHRHKTGALIRAAVRMGALSAGERGrAALPALDRYA 212
                      ****998899874445777777777765569*********777.58888...99**************************7654778******* PP

                      HHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHT CS
  polyprenyl_synt 181 lelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvlkeil 239
                      +++GlaFQ+qDD+lD++gd+++lgK  g+D q gk t+p+l  le+a ++     ++++
       CTQ26719.1 213 ENIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKK----AHDLI 267
                      *********************************************55544....34443 PP

>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.6e-05      0.14     149     192 ..      71     116 ..      38     134 .. 0.69
   2 ?   -0.6   0.0     0.074   6.7e+02     170     191 ..     241     262 ..     232     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.6e-05
        UbiA 149 alavflltwaialandlrdregD.rkagiktlpvvlGrkaaril..l 192
                 a+   ++++++++  dl+ +++D +++g++t  +++G+++a+    +
  CTQ26719.1  71 AAVECIHAYSLMHD-DLPAMDDDdLRRGLPTCHIKFGEANAILAgdA 116
                 22236788888898.**************************986541 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.074
        UbiA 170 gDrkagiktlpvvlGrkaaril 191
                  D++ g+ t p++lG + ar  
  CTQ26719.1 241 ADQQLGKSTYPALLGLEQARKK 262
                 689************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2550.43
//
Query:       CTQ26720.1  [L=80]
Description: exonuclease VII small subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-21   75.7   1.5    2.6e-21   75.4   1.5    1.1  1  Exonuc_VII_S  Exonuclease VII small subunit
  ------ inclusion threshold ------
      0.057   13.7   0.1      0.094   13.0   0.1    1.4  1  KxDL          Uncharacterized conserved protein


Domain annotation for each model (and alignments):
>> Exonuc_VII_S  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   1.5   2.9e-25   2.6e-21       1      52 []      11      62 ..      11      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 2.9e-25
  Exonuc_VII_S  1 FEealaeLeeIvekLEsgelsLeeslklyeeGvkLlkeCekkLdeaeqkvek 52
                  FE+al eLe+Iv++LEsg+l+Lee+l ++e+Gv+L+++ +++L++aeq+v++
    CTQ26720.1 11 FETALGELEQIVNRLESGDLPLEEALSEFERGVQLARQGQSQLQKAEQRVQI 62
                  9*************************************************85 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.1e-05     0.094      43      75 ..      32      64 ..      16      70 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
        KxDL 43 laklrarfkqgtkllkevkkdLesifkkirslk 75
                l+++ ++f++g++l+++ +++L++  ++++ l 
  CTQ26720.1 32 LEEALSEFERGVQLARQGQSQLQKAEQRVQILL 64
                789999***********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 666.12
//
Query:       CTQ26721.1  [L=482]
Description: sulfurtransferase required for thiamine and 4-thiouridine biosynthesis [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-80  268.6   0.0    4.3e-80  268.0   0.0    1.3  1  ThiI             Thiamine biosynthesis protein (ThiI)
    4.4e-26   91.7   2.0    7.8e-26   90.9   0.3    2.1  2  THUMP            THUMP domain
     0.0011   18.5   0.1       0.27   10.7   0.0    3.1  3  QueC             Queuosine biosynthesis protein QueC
     0.0017   17.9   0.1      0.016   14.7   0.0    2.4  2  Diphthami_syn_2  Diphthamide synthase
  ------ inclusion threshold ------
      0.042   12.6   0.1       0.12   11.2   0.0    1.8  2  tRNA_Me_trans    tRNA methyl transferase


Domain annotation for each model (and alignments):
>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.0   0.0   1.2e-83   4.3e-80       1     197 []     175     369 ..     175     369 .. 0.99

  Alignments for each domain:
  == domain 1  score: 268.0 bits;  conditional E-value: 1.2e-83
        ThiI   1 gtqgkvlaLlSgGiDSpVaaylllkRGcrvvlvhlknepgtseeaiekveklaellaeyqtslevklvvvdfkevlkeilekvkekltivllkrkmlri 99 
                 gtq++vl+L+SgG+DS+V++y+l++RGcrv+++++  ++g ++++i++++++++l++++++s++v++v+++f++v+ eilekv+++++ v+lkr+m+r+
  CTQ26721.1 175 GTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFF--NLGGAAHEIGVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKVDDGQMGVVLKRMMVRA 271
                 89*********************************..7************************************************************* PP

        ThiI 100 AekvaeeegakalvtGesLgqVaSqtleNlrvisavvnllilrPLigldKeeiiklAkeigtyeisiekedkCsvlakhPttkakleevekaeeklkl 197
                 A+kvae++g++alvtGe+LgqV+Sqtl+Nlr+i++v+++lilrPLi+ dKe+ii+lA+eigt++++++++++C+v++k+Pt+ka+++++e++ee++++
  CTQ26721.1 272 ASKVAERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISHDKEHIIDLAREIGTEDFARTMPEYCGVISKSPTVKAVKAKIEAEEEHFDF 369
                 **********************************************************************************************9876 PP

>> THUMP  THUMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.3   2.2e-29   7.8e-26       1     140 [.      28     161 ..      28     163 .. 0.97
   2 ?   -0.9   0.1      0.45   1.6e+03      10      40 ..     380     410 ..     347     447 .. 0.74

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 2.2e-29
                 HHHHHHHHHTT.H-SEEEEETTEEEEECTEEEEEETHHHHHHHHHTSTTECEEEEEEEEEESSHHHHHHHHHHHHHHHHHHCT-EEEEEEEESSSTSSS CS
       THUMP   1 geieellkegkvnverveagkgrivvelkgekpeedeellkealekargiqrvipvcevceadledileaakeivkkkfeeeketFaVrvkrrgkhfef 99 
                 g+i+++lk ++ + + v +++  i v+ k e+   ++ ++ +al++++gi++++ v+ v++++l di+e +  + ++ +e++  tF+Vrvkrrgkh ef
  CTQ26721.1  28 GNIRNVLKNYD-ETLAVVRHWDHIEVRAKDEN---QRPAIRDALTRIPGIHHILEVEDVPFTSLHDIFEQTLPLWREALEGK--TFCVRVKRRGKH-EF 119
                 699********.88888889*********998...********************************************998..************.** PP

                 HHHHHHHHHHHHHHCCTT.-EE-SSS-SEEEEEEEETTEEEE CS
       THUMP 100 tsreinrevGkaivektg.lkVdlenPdivvrveiikdkayi 140
                 ts e++r+vG+ +++ ++ ++V+l++Pd++v++ei +d++++
  CTQ26721.1 120 TSIEVERYVGGGLNQHIEtARVKLTDPDVTVNLEIENDRLLL 161
                 **************************************9876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.45
                 TT.H-SEEEEETTEEEEECTEEEEEETHHHH CS
       THUMP  10 gkvnverveagkgrivvelkgekpeedeell 40 
                  +++++++ ++ ++ vve+ +++ ++++ ++
  CTQ26721.1 380 SNIDIREIAQQTEETVVEVETVTGFGANDAI 410
                 4566666666666666666666666666665 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   7.5e-05      0.27       3      40 ..     181     219 ..     179     243 .. 0.84
   2 !    4.2   0.0    0.0071        26     152     181 ..     310     340 ..     265     355 .. 0.80
   3 ?   -1.8   0.0       0.5   1.8e+03      40      70 ..     377     407 ..     347     436 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.5e-05
                 EEE--SSHHHHHHHHHHHHH-SEEEEEEEESS-T.TSHH CS
        QueC   3 vvllSGGlDSttvlalakkegkevealtfdYgqr.hkke 40 
                 + l+SGG DS +  ++ +++g +v+   f+ g   h++ 
  CTQ26721.1 181 LSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAaHEIG 219
                 789************************999987656554 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0071
                 -EEE-TTTT--HHHHHHHHHHTT.HHHHH-B CS
        QueC 152 ieieaPlidlsKaeivklgkelg.vpleetl 181
                   i  Pli  +K++i+ l+ e+g  ++  t+
  CTQ26721.1 310 TLILRPLISHDKEHIIDLAREIGtEDFARTM 340
                 56889****************9954566665 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.5
                 HHHHHHHHHHHT--.-EEEEE-GGGGGGSCG CS
        QueC  40 eleaakkiakelgveehkildldllkelggs 70 
                 e  +  +i + ++ +e++++++++++ +g +
  CTQ26721.1 377 EEASNIDIREIAQQTEETVVEVETVTGFGAN 407
                 3333333444444445555555555555544 PP

>> Diphthami_syn_2  Diphthamide synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.16   5.6e+02       4      26 ..     181     204 ..     179     216 .. 0.83
   2 !   14.7   0.0   4.4e-06     0.016     108     181 ..     216     288 ..     210     304 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.16
  Diphthami_syn_2   4 avlysGGkDsilaLykalke.sev 26 
                        l+sGG Ds ++ y  +++   v
       CTQ26721.1 181 LSLISGGFDSGVSSYMLMRRgCRV 204
                      679*********999998864555 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.4e-06
  Diphthami_syn_2 108 relGlksvaP.LWkkdpeelleeiveekfevivvavkaegldeslLGrridkklidelkklsekygidkagegGe 181
                      +e+G+++va  LW++    +  ++v+ +fe + v+   e  d+  +G  +++ ++    k++e+yg++     Ge
       CTQ26721.1 216 HEIGVRQVAHyLWNRFGSSHRVRFVAINFEPV-VGEILEKVDDGQMGVVLKRMMVRAASKVAERYGVQAL-VTGE 288
                      699****99559******************86.566667788999**********************854.4455 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.3e-05      0.12       2      34 ..     179     211 ..     178     228 .. 0.87
   2 ?   -3.3   0.0      0.81   2.9e+03      10      31 ..     459     480 ..     458     480 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.3e-05
  tRNA_Me_trans   2 kvvvalSgGVDSsvaaallkeqgyevigvflkl 34 
                     v+ ++SgG DS v+ ++l ++g  v  +f++l
     CTQ26721.1 179 DVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNL 211
                    58899*********************9999876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.81
  tRNA_Me_trans  10 GVDSsvaaallkeqgyevigvf 31 
                    GV S + a+ l+eqg++ ++v+
     CTQ26721.1 459 GVMSRLQALYLREQGFSNVKVY 480
                    899999**********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3704.51
//
Query:       CTQ26722.1  [L=158]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-29  102.2   0.1    2.8e-29  101.9   0.1    1.0  1  AHSA1     Activator of Hsp90 ATPase homolog 1-like protein


Domain annotation for each model (and alignments):
>> AHSA1  Activator of Hsp90 ATPase homolog 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.1   1.5e-33   2.8e-29       4     123 ..      21     153 ..      18     154 .. 0.93

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 1.5e-33
                 HHHHHHHHH-HHHHHHH.....EEEEEEEE--STTEEEEE.EETTTSEEEEEEEEEEEEETTTEEEEE.EEEETSET...EEEEEEEEEEEEETTEEEE CS
       AHSA1   4 perVfraltdpellkrW.....ftlteaemdlrpGgkfrl.rdspdgkefgnegeylevvpperlvyt.wrledepe...eeestvtieleeegggTrl 92 
                 +  ++ra+ dp+ll+ W     +++++  +d+r+Gg+f++ +++pdg++ +n g++lev p++++v+t + ++d +    + ++t+ i++ +e+gg r+
  CTQ26722.1  21 APALWRAWADPALLRTWwcpkpWQTEVLAFDFRAGGAFHTvMHGPDGERSDNPGCFLEVIPQQKIVMTsMLTADYRPavsPFAMTTIITFADEQGGCRY 119
                 5579************99**************************************************44444555589988***************** PP

                 EEEE...EEEEHCHHHHHHHHHHHHHHHHHHHHH CS
       AHSA1  93 tlth...tglprkqkeeegveeGweqsldqLkal 123
                 t+t    + ++r+q+e++g+ eGw+ ++dqL +l
  CTQ26722.1 120 TATVlhaDDETREQHEQMGFFEGWNIVIDQLNDL 153
                 ***999*************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1297.65
//
Query:       CTQ26723.1  [L=197]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-45  153.1   0.0    6.5e-45  152.9   0.0    1.1  1  DJ-1_PfpI  DJ-1/PfpI family


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.0   3.6e-49   6.5e-45       2     164 ..       4     170 ..       3     171 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.9 bits;  conditional E-value: 3.6e-49
                 EEEEEEETTBEHHHHHHHHHHHHHTTEEEEEEESS...TSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EE CS
   DJ-1_PfpI   2 kvlvlladgvedvElivpvdvlkragikvdvvsvd...keevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekgklv 97 
                 ++l++la g e++E+++++d l r+g+kv+++sv    + ++++srG+k+ +da l +v+++++D++vlpGG +g+e++r+++ +ve+v++f+ +g++v
  CTQ26723.1   4 SALICLAPGSEETEAVTTIDLLVRGGVKVTTASVAsdgGLTIVCSRGVKLLADAPLVEVADGDFDIIVLPGGIKGAECFRDSTLLVETVRQFHLSGRIV 102
                 789*******************************999999*********************************************************** PP

                 EEETTTH.HHHHHTTTTTTSEE--SGGGHHHHHHTTSEE-SSSEEEETT..EEEESSGGGHHHHHHHHHH CS
   DJ-1_PfpI  98 aaICagp.qlLaaagvlkgrrvTsypavkdklekagakyvdkrvvvdgn..lvTsrgpgaaiefalelle 164
                 aaICa+p ++L+ +++++  ++T++pa+k+ +  + +++ dkr+v+d +  l+Ts+gpg++i+fal++++
  CTQ26723.1 103 AAICAAPaTVLVPHNLFPIGNMTGFPALKEHI--PAEQWQDKRMVWDPRvnLLTSQGPGTSIDFALKMID 170
                 ********************************..*************8766***************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1741.55
//
Query:       CTQ26724.1  [L=303]
Description: 2-dehydropantoate reductase, NADPH-specific [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-36  124.5   0.3    3.8e-36  124.0   0.3    1.2  1  ApbA_C          Ketopantoate reductase PanE/ApbA C terminal
    1.6e-22   79.8   0.1    3.3e-22   78.8   0.1    1.5  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0038   17.2   0.2      0.018   15.0   0.1    2.3  3  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
  ------ inclusion threshold ------
      0.029   14.3   0.2        1.3    8.8   0.0    2.3  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 


Domain annotation for each model (and alignments):
>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   0.3   8.5e-40   3.8e-36       1     125 []     168     289 ..     168     289 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.0 bits;  conditional E-value: 8.5e-40
      ApbA_C   1 dirlarweKllinaainpltalldckngellespelralvrallkEalavaeaegvelseerleeaveavlektaanrsSMlqDveagrktEidyinGa 99 
                 +i +a+w+Kl++n++inpltal +ckng+l+   ++ + v a+++E+ av+e+eg++ s+e+l  +ve+v+e ta+n sSMlqDv+a+r+tEidyi G+
  CTQ26724.1 168 NIHSAIWRKLAVNCVINPLTALKGCKNGDLR---DYTQEVAAICREVAAVMEREGIHTSAENLLFYVEQVIESTAENISSMLQDVRAQRHTEIDYITGF 263
                 68899*************************9...6778899********************************************************** PP

      ApbA_C 100 vvklAeklgvetPvnellyellkale 125
                 ++++A+++gv +P n+ l+el+k +e
  CTQ26724.1 264 LLNRARAHGVAVPENARLFELIKRKE 289
                 **********************9886 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.1   7.3e-26   3.3e-22       1     151 [.       3     143 ..       3     144 .. 0.83

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 7.3e-26
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEEE CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldpntvv 98 
                 +++lG+Ga+G+l+   L+k+g++v  +lr +  + +++   ++ ++     ++ ++ +++++    l+  +l++vt+Ka+q+ +a++ ++ +l ++t++
  CTQ26724.1   3 VTVLGCGALGQLWLTALYKQGHEVQGWLRVPqPFCSVN--VIETDG----SVFNESLTANDP--DFLASSELLLVTLKAWQVSNAVKHLAGILPDTTPI 93 
                 689***************************94444322..222222....234444444444..578889***************************** PP

                 EEESSSSCHHHHHTTTSTTSEEEEEEEE-EEEEEETTEEEECS--EEEEEESS CS
        ApbA  99 lllqNGlgheeelrealpkprvlggvtthgatregpgevhhagkgeikigela 151
                 +l++NG+g+ eelr     +++l + tt+ a r+g + + h ++g+++ig+++
  CTQ26724.1  94 VLIHNGMGTVEELRGVK--QPLLLASTTQAARRDG-NVIIHVAQGTTHIGPAK 143
                 ***************98..99**************.5666888*******975 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1     4e-06     0.018       1     107 [.       2     102 ..       2     138 .. 0.85
   2 ?   -3.2   0.0       1.7   7.5e+03     102     124 ..     188     210 ..     178     220 .. 0.69
   3 ?   -1.7   0.0      0.58   2.6e+03      71      89 ..     225     242 ..     199     276 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4e-06
                     -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--T CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqalrevlkklkgllkk 95 
                     k++vlG G+ G    ++l ++ghev  w r ++ + ++n  +++        ++e+l+a++   + l+ ++++++ +    + + +k+l+g+l++
      CTQ26724.1   2 KVTVLGCGALGQLWLTALYKQGHEVQGWLRVPQPFCSVNVIETDGS-----VFNESLTAND--PDFLASSELLLVTLKAWQVSNAVKHLAGILPD 89 
                     79********************************999998877655.....5666777653..4567789999999999999***********99 PP

                     T-EEEE---SE.E CS
  NAD_Gly3P_dh_N  96 kailvsliKGi.e 107
                      +++v +  G+  
      CTQ26724.1  90 TTPIVLIHNGMgT 102
                     9999999999852 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.7
                     ---SEET.TTEEHHHHHHHHH-S CS
  NAD_Gly3P_dh_N 102 liKGieegtlkllsevieeelke 124
                     ++KG ++g l+ +++ ++++  e
      CTQ26724.1 188 ALKGCKNGDLRDYTQEVAAICRE 210
                     66777777777776666665544 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.58
                     -EEEE---HHHHHHHHHHH CS
  NAD_Gly3P_dh_N  71 diivlvvPsqalrevlkkl 89 
                     + +++ v  q+++++++++
      CTQ26724.1 225 ENLLFYV-EQVIESTAENI 242
                     3333333.23333333333 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0003       1.3       1      26 [.       2      27 ..       2      34 .. 0.95
   2 ?    3.2   0.1     0.016        72      57      91 ..     208     243 ..     185     255 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0003
                EEEEE--SCCHHHHHHHHHHTT-EEE CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVv 26
                kv+v+G+G +G+ + +++ ++g+eV+
  CTQ26724.1  2 KVTVLGCGALGQLWLTALYKQGHEVQ 27
                79**********************96 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.016
                 HHHHCCCHHCEEEES-HHHHH.C-SEEEE-S-SSHH CS
     3HCDH_N  57 eeeveaalarisfttdleeav.dadlviEavvEnle 91 
                   ev+a+++r  ++t+ e++   ++ viE+ +En++
  CTQ26724.1 208 CREVAAVMEREGIHTSAENLLfYVEQVIESTAENIS 243
                 468999999*9*********99***********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2220.49
//
Query:       CTQ26725.1  [L=163]
Description: putative nucleotide binding protein (UPF0234 protein) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-65  218.4   2.6    6.2e-65  218.2   2.6    1.0  1  DUF520    Protein of unknown function (DUF520)


Domain annotation for each model (and alignments):
>> DUF520  Protein of unknown function (DUF520)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.2   2.6   3.5e-69   6.2e-65       1     161 []       2     162 ..       2     162 .. 1.00

  Alignments for each domain:
  == domain 1  score: 218.2 bits;  conditional E-value: 3.5e-69
      DUF520   1 psfDivsevdlqevknAvdqakkeistRfDfkgskaeielkekekeitltaesefklkqvkdilksklvkrgvdlkaldlgkvekasgkkvkqevklke 99 
                 psfDivsevdlqe +nAvd+a++e+++RfDf+g++a++el++ +k+i++ +es+f+++q++dil++kl+krg++ ++ld+ +   +sgk++  e+klk+
  CTQ26725.1   2 PSFDIVSEVDLQEARNAVDNASREVESRFDFRGVEATFELNDANKTIKVLSESDFQVNQLLDILRAKLLKRGIEGTSLDVPEDIVHSGKTWFVEAKLKQ 100
                 7************************************************************************************************** PP

      DUF520 100 gidkekakkivklikdsklkvqasiqgdevRvtgkkrDdLQaviallkkedldlplqftNfr 161
                 gi++   kkivklikdsklkvqa+iqg+e+Rvtgk+rDdLQ+v+al++  dl++p+qf+Nfr
  CTQ26725.1 101 GIESAVQKKIVKLIKDSKLKVQAQIQGEEIRVTGKSRDDLQSVMALVRGGDLGQPFQFKNFR 162
                 *************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1044  (0.0582297); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1287.55
//
Query:       CTQ26726.1  [L=454]
Description: putative transporter, major facilitator family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-46  158.4  65.2    3.5e-41  141.3  43.3    2.0  2  MFS_1            Major Facilitator Superfamily
    3.5e-09   36.1  13.5    3.5e-09   36.1  13.5    2.9  2  Sugar_tr         Sugar (and other) transporter
  ------ inclusion threshold ------
       0.02   13.8  27.9       0.93    8.3   7.4    2.3  2  MFS_1_like       MFS_1 like family
       0.16   10.9  33.8        1.8    7.5   4.0    3.6  2  PUCC             PUCC protein
       0.44   10.6  14.9       0.47   10.5   3.1    2.8  2  DUF5391          Family of unknown function (DUF5391)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3  43.3   9.8e-45   3.5e-41       4     352 ..      20     354 ..      17     355 .. 0.81
   2 !   31.1  14.0   3.1e-11   1.1e-07      62     180 ..     278     396 ..     275     431 .. 0.80

  Alignments for each domain:
  == domain 1  score: 141.3 bits;  conditional E-value: 9.8e-45
       MFS_1   4 aaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgaga 101
                 ++ l +l++++++p+l+   +a + g+s++ igl++++y+l++av+++p+G lsdr+Gr+++++ gll+f+lg+++++++ s+w ++++r+lqG ga  
  CTQ26726.1  20 VFSLRMLGMFMILPVLTTyGMALQ-GASEALIGLAIGIYGLAQAVFQIPFGLLSDRIGRKPLIVGGLLIFVLGSVIAALTDSIWGIILGRALQGSGA-- 115
                 677899***********9888888.99**********************************************888888899*************95.. PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp.a 199
                 +++a++al++d++ +++r++a+++++++f++ ++++++lg++++++lg +a+f+++ai++ ++++l  l+++ + +++  +++            v+  
  CTQ26726.1 116 IAAAVMALLSDLTREQNRTKAMAFIGVSFGVTFAIAMVLGPIVTHQLGLHALFWMIAILATVGILL-TLWVVPNSHNHVLNRESGM---------VKgC 204
                 ***************************************************************884.4444455555555544444.........4457 PP

       MFS_1 200 wkallkdpvlwillialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallav 296
                 ++++l+ p l+ l +++ + +++++++++ lp    e  g++   ++ ++l+ +++++++++ +++ + + ++   ++r +l ++++ll+a ++++ a 
  CTQ26726.1 205 FSKVLAEPRLLKLNFGIMCLHIMLMSTFVALPG-QLEAAGFPaaEHWKIYLVTMVISFISVVPFIIYAEVKRK---MKRVFLLCVAILLIAEIVLWGAG 299
                 889999998877888888888888889999999.59******6644555555555555555555555554444...33444444444444444444444 PP

       MFS_1 297 tssavllll.vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                    +++ l+ ++ l+ +++ +  ++l +l+s+  p+ + gta+g+++t + lg a+g
  CTQ26726.1 300 G--YFWELVaGVQLFFLAFNLLEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIG 354
                 4..666666245555559************************************998 PP

  == domain 2  score: 31.1 bits;  conditional E-value: 3.1e-11
       MFS_1  62 rrvlllglllfalg.lllllfa.sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyil 157
                 +rv+ll++++++++ ++l+  a   +w l++ + ++  ++  +l ++  +li++ +p   +g a+g++s++  lG+++g +lgg++   +  + vf++ 
  CTQ26726.1 278 KRVFLLCVAILLIAeIVLWG-AgGYFWeLVAGVQLFFLAF-NLLEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGALGGWVDGFFDSQTVFLLG 374
                 78************555555.3355775555555555555.8********************************************************* PP

       MFS_1 158 aivsllafvlfllllpeepperk 180
                 a++++l+++ ++  + e+p  ++
  CTQ26726.1 375 ALLAMLWLL-VASTMSEPPYVSS 396
                 *******66.4455555554444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1  13.5   9.7e-13   3.5e-09      44     196 ..      46     191 ..      23     198 .. 0.89
   2 ?    1.0   9.0     0.042   1.5e+02      75     166 ..     277     366 ..     217     393 .. 0.63

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 9.7e-13
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s+ l+gl  +i+ + +++ ++ +gll+dr+GRk+ ++ + ++fv g+v+ a+++   s++ +i+gR l G   G++ + v  ++s ++ ++ R +   +
  CTQ26726.1  46 SEALIGLAIGIYGLAQAVFQIPFGLLSDRIGRKPLIVGGLLIFVLGSVIAALTD---SIWGIILGRALQG--SGAIAAAVMALLSDLTREQNRTKA--M 137
                 66799*************************************************...************8..6899999999***********765..5 PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---HH CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPESPr 196
                    +++fG  +a+ + lg   t++  g + l+++ +++a + ++l  +++P+S +
  CTQ26726.1 138 AFIGVSFGVTFAIAMVLGPIVTHQ-LGLHALFWMIAILATVGILLTlWVVPNSHN 191
                 678999*************99999.9************99887775378899865 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.042
                 HHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS- CS
    Sugar_tr  75 RkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn 166
                  k ++l ++++++i+ ++   a g+  ++ l++g  l  ++  l  +l P +is+ +p+ + g+ +++y ++  +G  ++  +g  ++ + +
  CTQ26726.1 277 MKRVFLLCVAILLIAEIVLWGAGGY--FWELVAGVQLFFLAFNLLEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGALGGWVDGFFD 366
                 3556677777777777777777755..88888888888888888888888888888888888888888777666666665555544433333 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   7.4   0.00026      0.93     253     375 ..      41     160 ..      11     170 .. 0.80
   2 ?    7.7  19.4   0.00038       1.3     156     383 ..     142     371 ..     137     373 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00026
  MFS_1_like 253 kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgq 351
                    gas+ l+G ++ +  +a+ ++ +    l +++G   l++ +ll+++l  ++ a++++ w +++  +L+g   g++ aa++   s+++ ++ +++ +
  CTQ26726.1  41 ALQGASEALIGLAIGIYGLAQAVFQIPFGLLSDRIGRKPLIVGGLLIFVLGSVIAALTDSIWGIILGRALQGS--GAIAAAVMALLSDLTREQNRTKAM 137
                 4479*******************************************************************96..555579999999999999999999 PP

  MFS_1_like 352 gllsglyfglGralGsliGGllwd 375
                 +++ g++fg+  a+  ++G ++  
  CTQ26726.1 138 AFI-GVSFGVTFAIAMVLGPIVTH 160
                 865.56677777776666655544 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00038
  MFS_1_like 156 vGyaifafitGilidhysvnllpysallyvlaallvisllvvl..ilnetekesklkvtkslqvllnilknpeviifllvalilgmswgiienF..lfl 250
                 v+++++  ++ +++  + +++l+++al+ ++a+l ++ +l+ l  ++n  ++  + +   ++  + ++l +p+++ + + ++ l+++   + +F  l  
  CTQ26726.1 142 VSFGVTF-AIAMVLGPIVTHQLGLHALFWMIAILATVGILLTLwvVPNSHNHVLNRESGMVKGCFSKVLAEPRLLKLNFGIMCLHIML--MSTFvaLPG 237
                 5566543.33333333333344567788888888776666554114455555445555555688999999999998877666666553..444411444 PP

  MFS_1_like 251 YLkelgasnt.llGs...lvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapks 345
                  L+  g++    + +   ++++  ++ +p f++  ++ +k+  v+ll++a+l+ i+  +l ++   +w ++    L  ++f ll a + + +sk  p +
  CTQ26726.1 238 QLEAAGFPAAeHWKIylvTMVISFISVVP-FIIYAEVKRKMKRVFLLCVAILL-IAEIVLWGAGGYFWELVAGVQLFFLAFNLLEALLPSLISKESPAG 334
                 56677766431344400034444444444.5556678999**********986.678899999999999999999999********************* PP

  MFS_1_like 346 leatgqgllsglyfglGralGsliGGllwdlksaiflF 383
                 +++t +g++s+  f lG a+G  +GG + + ++++++F
  CTQ26726.1 335 YKGTAMGVYSTSQF-LGVAIGGALGGWVDGFFDSQTVF 371
                 **********9988.9*********9988888888777 PP

>> PUCC  PUCC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.0   0.00051       1.8     306     347 ..      22      63 ..      11      72 .. 0.90
   2 ?    5.3  23.1    0.0023       8.1     102     359 ..     113     361 ..      62     391 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00051
        PUCC 306 gvlllGlasGlfavaaltlmldlaaeeraglalGaWGaaQai 347
                 ++ +lG++  l   ++ +++l+ a e  +gla+G++G+aQa+
  CTQ26726.1  22 SLRMLGMFMILPVLTTYGMALQGASEALIGLAIGIYGLAQAV 63 
                 567889999999999**************************8 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0023
        PUCC 102 vslsqTallALladlaeeeerpkvvgllyvmlligivvsaivvgallkdytearLirvvqgvalitlvlnvlalWkievkskkkkeekeeeepslleaw 200
                  +++  a++ALl+dl++e++r+k+ + + v + +  +++ +   ++++++  + L ++++  a++ ++l+   lW + + +++     ++e+  ++  +
  CTQ26726.1 113 SGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGVTFAIAMVLGPIVTHQLGLHALFWMIAILATVGILLT---LWVVPNSHNHV---LNRESGMVKGCF 205
                 44677899**************************999999999999999**********99999888765...78877744444...57888899**** PP

        PUCC 201 lklvaekqalaflaflllgtlaffmqdviLEpYgGevlgLtvgeTTkLtalfalGtlvGlllaglvlsrglkkarlaslgvllg..llsflllilaall 297
                 +k++ae++ l++ + ++++ + + m   +  p   e  g++++e  k+     +  ++ ++++  +++  ++ +r  +++ ll+  +l +  ++l ++ 
  CTQ26726.1 206 SKVLAEPRLLKLNFGIMCLHIML-MSTFVALPGQLEAAGFPAAEHWKIYL---VTMVISFISVVPFII-YAEVKRKMKRVFLLCvaILLIAEIVLWGAG 299
                 ************99999998865.7788877888899*******988654...445556665555555.333334344444444003334445666666 PP

        PUCC 298 envallvagvlllGlasGlfavaaltlmldlaaeeraglalGaWGaaQaiaaglavllggal 359
                 +  + lvagv l+ la  l+ +   +l+ + ++++ +g+a+G++   Q +  +++++lgg +
  CTQ26726.1 300 GYFWELVAGVQLFFLAFNLLEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGALGGWV 361
                 779*****************999999999**************9888888777777777765 PP

>> DUF5391  Family of unknown function (DUF5391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.1   0.00013      0.47      26      96 ..     120     190 ..      84     210 .. 0.81
   2 ?    5.0   4.1    0.0067        24      39      92 ..     240     296 ..     216     325 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
     DUF5391  26 vvtslsPladtgpnanqfnslgmwksiGiillfylvplllyilgikalrfvmailcgvGllidlvllavvf 96 
                 v++ ls l+   +++  +  +g+   +   +++ l p++ + lg++al +++ail +vG+l+ l ++   +
  CTQ26726.1 120 VMALLSDLTREQNRTKAMAFIGVSFGVTFAIAMVLGPIVTHQLGLHALFWMIAILATVGILLTLWVVPNSH 190
                 555666676666666666777777778888888899**************************998876554 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0067
     DUF5391  39 nanqfnslgmwks..iGiillfy.lvplllyilgikalrfvmailcgvGllidlvll 92 
                 +a  f +++ wk   + +++ f  +vp+++y+   + ++ v  + +++ l+ ++vl 
  CTQ26726.1 240 EAAGFPAAEHWKIylVTMVISFIsVVPFIIYAEVKRKMKRVFLLCVAILLIAEIVLW 296
                 45678888888743378888765278******9999****99888888777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       994  (0.0554409); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 3156.56
//
Query:       CTQ26727.1  [L=392]
Description: Uncharacterized oxidoreductase YfiI [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.8e-28   97.4   0.0    1.6e-27   96.7   0.0    1.4  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    7.8e-10   38.8   0.0    2.6e-09   37.1   0.0    1.9  2  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 
  ------ inclusion threshold ------
      0.022   14.0   0.0      0.034   13.4   0.0    1.2  1  Mycoplasma_p37  High affinity transport system protein p37


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.0   2.7e-31   1.6e-27       1     120 []      12     142 ..      12     142 .. 0.91

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 2.7e-31
                   EEEEEETTSHH...HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE...EESSHHHHHTCT.....TESEEEE-S-GGGHHHHHHHHHHTT CS
  GFO_IDH_MocA   1 lrvaiiGaGki...gskhlrplnesqrleevvalldpdaeraeavaesfgve...aysdleelladp.....eidavivatpngtheelakaaleag 86 
                   lr++++G+G     g+ h  +  + +  + ++++ld daer +a+ e++g++   +y+d++ l++++      i++v+v+tpn+th++++kaaleag
    CTQ26727.1  12 LRWGMVGGGGTsqiGYSHRCAALRDNVYTLLAGALDVDAERGRAFGEQLGIAperCYADYQTLFREEaqrpdGIEVVSVTTPNNTHFAITKAALEAG 108
                   689****9877788999954555554778**********************************9999765555************************ PP

                   -EEEEESSS-SSHHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  87 khvllEKPlattveeakelvelaekkgklvsvgy 120
                    hv++EKPl++t eea+elvel +k++k+v+v+y
    CTQ26727.1 109 LHVICEKPLCFTAEEARELVELSKKQNKIVGVTY 142
                   ********************************97 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   4.3e-13   2.6e-09       1     115 [.     154     277 ..     154     278 .. 0.89
   2 ?   -3.0   0.0       1.2   6.9e+03      79     100 ..     356     375 ..     336     377 .. 0.61

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 4.3e-13
                     HHHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSH.......HCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEE..E CS
  GFO_IDH_MocA_C   1 KelIengklGevvsvdvwtldtragaeakkrwkrrk.......kksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaav..m 86 
                     + +I++g lGe++ v+  +   ++++  + +    +       ++++ vlgdl++H + ++ + ++q  ++  ++ r+++++++a+ ed+a   m
      CTQ26727.1 154 RQMIADGLLGEIRIVNMQFAHGFHNQAVELQAESTRwrvtpkfAGPSYVLGDLATHPLFVAETMAPQLNIKRLMCSRQSFVPSRAPLEDNAFvlM 248
                     679**************8888887765554444333344688899999******************************************999** PP

                     EEEEEEETTEEEEEEEECCTSSSEEEEEE CS
  GFO_IDH_MocA_C  87 svlnlekgsgevitlesgvskglsiryvi 115
                     ++ n++ gs++++  +sg +++ + r+v+
      CTQ26727.1 249 EYDNGAVGSMWTSAVNSGAMHSQKVRIVG 277
                     *************************9997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.2
                     CSCSEEEEEEEEEEETTEEEEE CS
  GFO_IDH_MocA_C  79 ededaavmsvlnlekgsgevit 100
                     +d+++  ++v+ + +g+++v +
      CTQ26727.1 356 QDFWY--PDVEAGLHGVYWVEQ 375
                     33344..478888888888865 PP

>> Mycoplasma_p37  High affinity transport system protein p37
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.8e-06     0.034     291     322 ..     126     157 ..     112     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.8e-06
  Mycoplasma_p37 291 viieLaknkqdlyGpllGYnGYkkitdfnkev 322
                      ++eL+k+++ + G ++GY GY++i++  + +
      CTQ26727.1 126 ELVELSKKQNKIVGVTYGYAGYQMIQQARQMI 157
                     689**********************9987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3108.51
//
Query:       CTQ26728.1  [L=454]
Description: 4-hydroxybenzoate transporter PcaK [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-55  188.2  86.3    1.1e-39  136.3  45.3    2.2  2  MFS_1     Major Facilitator Superfamily
    9.5e-25   87.4  37.4    4.5e-23   81.8  15.3    2.2  2  Sugar_tr  Sugar (and other) transporter
    1.3e-07   31.2   8.9    1.3e-07   31.2   8.9    2.1  2  MFS_4     Uncharacterised MFS-type transporter YbfB
     0.0048   16.0  24.9     0.0037   16.3  19.9    2.8  2  PUCC      PUCC protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3  45.3   2.6e-43   1.1e-39       2     291 ..      30     338 ..      29     338 .. 0.89
   2 !   65.9  33.0   6.8e-22     3e-18       1     166 [.     261     427 ..     261     452 .. 0.90

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 2.6e-43
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlga 99 
                 +++++l +++++i g+++p +l+ + g+s +++gl++++  +g a+++++ G+l+d +Gr+++++ ++++f+++ ++++ f++++  ++++r+++Glg 
  CTQ26728.1  30 FCVIALDGFDIAIMGFIAP-TLKLEWGVSNHQLGLVISAALIGLALGAIFSGPLADWLGRKKIIINSVFFFGFW-TIATaFSHNVEQMMFFRFMTGLGL 126
                 79999**************.******************************************************.77776878888************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 ga++p++++l+++++p+++r++ i ++  gf +Ga+ g   +++l+ ++gW++++ + +i+ ll++ l ++llpe+ +    k     +          
  CTQ26728.1 127 GAAMPNIGTLVSEYAPERQRSFIITVIFCGFTFGAAAGGFSASWLIPQFGWHSLMALGGILPLLFAPLLIWLLPESVRFLVIKQAPAARirailnrlyp 225
                 *****************************************************************9988888855555555444444436667766777 PP

       MFS_1 189 .....kgtgpaplvp....awkallkdpvlw...illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrr 275
                      + ++  p+ p    a +++l++++ +   +l+++ +++ f +++l ++lp+ l++  g++ + +a+++ a+++++g  ++l+ag+l+dr++++r
  CTQ26728.1 226 gqisdNLRFILPAQPaagnAMRIVLSRQYGFgslMLWLVYFMGLFLVYILGSWLPT-LVKAVGMT-VSQAAIMTAIYQAGGTLGSLFAGWLMDRINPHR 322
                 76666444444444477788999999995546779999999999************.5*******.********************************* PP

       MFS_1 276 rlllallllllaalgl 291
                 +l ++++++ l+++++
  CTQ26728.1 323 ALGIIYAVGGLFTMAM 338
                 ********99999875 PP

  == domain 2  score: 65.9 bits;  conditional E-value: 6.8e-22
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGl 97 
                 l+l++f+  +  +ilg++lp +l ++ g+++s++ +++++y +g  ++sl++G+l+dr+ + r l + +++ +l+ ++++ +a++++ ll+ l +++G+
  CTQ26728.1 261 LWLVYFMGLFLVYILGSWLP-TLVKAVGMTVSQAAIMTAIYQAGGTLGSLFAGWLMDRINPHRALGIIYAVGGLF-TMAMgYAAGSFaLLCMLAFISGA 357
                 699*****************.******************************************888888888888.555557888898*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafv 166
                 +  +++++++al a+++p + r+ + +++ +   +Gail + +g+ ++  +l +++vf+il+i ++l + 
  CTQ26728.1 358 CLNGANTGMNALSARYYPTQARATGSSWMHGVGRIGAILSAFAGAEMMaLNLPFESVFLILGIPAALTVA 427
                 ****************************************9999966659999************99844 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8  15.3   9.9e-27   4.5e-23      11     213 ..      35     222 ..      24     274 .. 0.88
   2 !    8.6  17.2   0.00017      0.76      35     181 ..     283     422 ..     252     431 .. 0.76

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 9.9e-27
                 HHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGH CS
    Sugar_tr  11 lfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgR 109
                 l g+d++++g+++  lk   + g+s+++         +gl+ s++l+G ++G++f+g+l+d++GRkk+++ ++++f   ++ +a+++   +ve++++ R
  CTQ26728.1  35 LDGFDIAIMGFIAPTLK--LEWGVSNHQ---------LGLVISAALIGLALGAIFSGPLADWLGRKKIIINSVFFFGFWTIATAFSH---NVEQMMFFR 119
                 66888888888888887..444444444.........69************************************************...********* PP

                 HHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHH.HHGGGS---HHHHHHTT-HH.H CS
    Sugar_tr 110 vlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallll.illlflPESPrylvekgkee.e 206
                 + +G+g+G+a   + +++sE+Ap++ R++++++   + tfG   + ++   l    +   w+ l++l  +++ll++ +l+++lPES r+lv+k+    +
  CTQ26728.1 120 FMTGLGLGAAMPNIGTLVSEYAPERQRSFIITVIFCGFTFGAAAGGFSASWLIPQFG---WHSLMALGGILPLLFApLLIWLLPESVRFLVIKQAPAaR 215
                 *****************************************9888888777777666...************9998345599**********9876555 PP

                 HHHHHHH CS
    Sugar_tr 207 akevlak 213
                  +++l +
  CTQ26728.1 216 IRAILNR 222
                 5566555 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00017
                 --SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-S CS
    Sugar_tr  35 sksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApk 133
                  k+++++    ++  ++++i+++G+++Gslfag+l+dr+    +l i+ ++    ++ ++ a    s+ +l++  +++G ++ +a++ +  + + + p+
  CTQ26728.1 283 VKAVGMTV---SQAAIMTAIYQAGGTLGSLFAGWLMDRINPHRALGIIYAVGGLFTMAMGYAA--GSFALLCMLAFISGACLNGANTGMNALSARYYPT 376
                 44455444...5999*********************998888777655555555555555555..79******************************** PP

                 CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHH CS
    Sugar_tr 134 klRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpa 181
                 + R +  s+      +G +++a+ g+ +   +    +   + +  +pa
  CTQ26728.1 377 QARATGSSWMHGVGRIGAILSAFAGAEMMALNL--PFESVFLILGIPA 422
                 **********************99998854443..3555555555555 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   8.9   2.9e-11   1.3e-07      16     171 ..      47     201 ..      43     220 .. 0.85
   2 ?    2.8  18.8     0.013        57      14     165 ..     277     429 ..     267     451 .. 0.70

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 2.9e-11
       MFS_4  16 LPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlr.llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaa 113
                  P l  e ++s  q+gl+ +a ++G  +Ga+ ++  l+    R + +  +++     ++a a+ +++  ++  Rf++G++ ++++  +++lv + a + 
  CTQ26728.1  47 APTLKLEWGVSNHQLGLVISAALIGLALGAI-FSGPLADWLGRKKiIINSVFFFGFWTIATAFSHNVEQMMFFRFMTGLGLGAAMPNIGTLVSEYAPER 144
                 688899999**********************.5577777777877678889999999****************************************** PP

       MFS_4 114 rrervgallfaGvGlGiavsgllvl.lllqlglsasslWlalavlsavllllvalllpr 171
                 +r++++ ++f+G  +G a++g  ++ l+ q+g+++     + ++l ++   l+++llp+
  CTQ26728.1 145 QRSFIITVIFCGFTFGAAAGGFSASwLIPQFGWHSL--MALGGILPLLFAPLLIWLLPE 201
                 *********************987615555555554..567778888777777777774 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.013
       MFS_4  14 piLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvll..llama.ltesfaaflliRflaGvasAvvlvfgsslvlah 109
                   LP l++++++++sqa+++ a+  +G  +G+l+a  ++  ++       g++ +v    ++am+ ++ sfa++ ++ f++G     +   + +l+ + 
  CTQ26728.1 277 SWLPTLVKAVGMTVSQAAIMTAIYQAGGTLGSLFA--GWLMDRINPHRALGIIYAVGGlfTMAMGyAAGSFALLCMLAFISGACLNGANTGMNALSAR- 372
                 579******************************99..5554443333334444444440055554234556666666777665444444444444444. PP

       MFS_4 110 aaaarrervgallfaGvG.lGiavsgllvllllqlglsasslWlalavlsavllllv 165
                   ++++ + g+    GvG +G ++s+ + + +++l+l  +s+ l+l++ +a+ +  +
  CTQ26728.1 373 YYPTQARATGSSWMHGVGrIGAILSAFAGAEMMALNLPFESVFLILGIPAALTVAGL 429
                 46778888888889999989*****99999999999999999999988777665544 PP

>> PUCC  PUCC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.5     0.076   3.4e+02     300     345 ..      60     106 ..      31     116 .. 0.51
   2 !   16.3  19.9   8.4e-07    0.0037      83     321 ..     107     371 ..      75     401 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.076
        PUCC 300 vallvagvlllGlasGlfavaaltlmldlaaeerag.lalGaWGaaQ 345
                 +  lv +++l+Gla G +  + l+  l        +  + G W +a 
  CTQ26728.1  60 QLGLVISAALIGLALGAIFSGPLADWLGRKKIIINSvFFFGFWTIAT 106
                 34455555555555555555555555444333333324445555555 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 8.4e-07
        PUCC  83 atwaglilaavafllvGlgvslsqTallALladlaeeeerpkvvgllyvmlligivvsaivvgallkd...............ytearLirvvqgvali 166
                 a++  +   ++   + Glg+++    +  L+++ a e++r+ +++++++ +++g +++ +  ++l+ +               +  a L+  + + ++ 
  CTQ26728.1 107 AFSHNVEQMMFFRFMTGLGLGAAMPNIGTLVSEYAPERQRSFIITVIFCGFTFGAAAGGFSASWLIPQfgwhslmalggilplL-FAPLLIWLLPESVR 204
                 3333333344444699******************************************************************63.44444445555667 PP

        PUCC 167 tlvlnvlalWkievkskkkk........eekeeeepslleawlklvaekqalaflaflllgtlaffmqdviLEpYg...GevlgLtvgeTTkLtalfal 254
                  lv++   + +i +  ++ +        +    ++p   +a++ +++++  +  l+  l++ +++f+   iL ++     + +g+tv++   +ta++  
  CTQ26728.1 205 FLVIKQAPAARIRAILNRLYpgqisdnlRFILPAQPAAGNAMRIVLSRQYGFGSLMLWLVYFMGLFLVY-ILGSWLptlVKAVGMTVSQAAIMTAIYQA 302
                 7777777777777766666655554332222334454555555555999999999999*********85.5665541115679**************** PP

        PUCC 255 GtlvGlllaglvlsrglkkarlaslgvllgllsflllilaallen.....vallvagvlllGlasGlfavaa 321
                 G+ +G l ag+++  +++++  ++lg++ ++++++ + +  ++++     + ++++g++l G  +G+ a +a
  CTQ26728.1 303 GGTLGSLFAGWLMD-RINPH--RALGIIYAVGGLFTMAMGYAAGSfallcMLAFISGACLNGANTGMNALSA 371
                 **********9998.66666..56888888888888888888887333434456667777777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 3668.72
//
Query:       CTQ26729.1  [L=272]
Description: Sugar phosphate isomerases/epimerases [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-16   58.6   0.0    7.4e-16   58.2   0.0    1.2  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
      0.052   13.6   0.1       0.11   12.5   0.1    1.6  1  DUF218        DUF218 domain


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   8.2e-20   7.4e-16       1     194 [.      22     207 ..      22     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 8.2e-20
                   HHHHHHCT-SEEEEECCTCSHHHHC.....HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBC CS
  AP_endonuc_2   1 laaaaeaGfdgvElfgrdlvpvsel.....sdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlhpG 92 
                   +++aa++Gf++v l++ ++ p +++     +  ++r+  +al e+g+r++ +++     +       +      d+l+r +e+aa+LGa ++ +  G
    CTQ26729.1  22 VRIAARTGFTHVGLRLLPATPTDPDydmlgDTPAVRATLAALMETGIRVSDVEIVRLTPG------FTL----DDRLQRFMETAARLGAGQVLVA-G 107
                   579********************99***********************554444333333......334....699******************9.4 PP

                   CGBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGGEEEEEE. CS
  AP_endonuc_2  93 tagagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgdeelarlldavdspnvgvclDtgHlliaeedvddalraladrikhvHik 189
                             +++++r a++l  la+ +++ g +  lE+++++   ++ + +++l+ a +++ +g+  D  H++ a+e ++++    a ++ +++++
    CTQ26729.1 108 ---------NDDNLQRSADNLAILAAAGRPFGLTMNLEPMPWTQLRNI-AAAQALIAASGREDIGILVDALHFWRAGESLAALSSLPAHHLNYMQLC 194
                   .........799********************************9999.************************************************ PP

                   EESS........T CS
  AP_endonuc_2 190 Dakg........d 194
                   D+           
    CTQ26729.1 195 DGAAqrpeseqeL 207
                   *988655555553 PP

>> DUF218  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.3e-05      0.11      13     106 ..      87     183 ..      67     220 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
      DUF218  13 laeRldeaaelyragkiivsGggadedvseaeamaeylrelgvp.eeailledrsrnTeenarfskell...ker.sillVTsafHmpRalllfrkag. 105
                   +R  e a+ + ag+++v G   d++ + ++   ++l + g p    + le+   +   n++++++l+   + r  i +  +a H  Ra   +++++ 
  CTQ26729.1  87 RLQRFMETAARLGAGQVLVAGN--DDNLQRSADNLAILAAAGRPfGLTMNLEPMPWTQLRNIAAAQALIaasG-ReDIGILVDALHFWRAGESLAALSs 182
                 3345555555556779****94..567777777777788889998767889****************99**64.559*************988887744 PP

      DUF218 106 a 106
                  
  CTQ26729.1 183 L 183
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2092.45
//
Query:       CTQ26730.1  [L=562]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.9e-104  348.0   6.2   8.9e-104  347.9   6.2    1.0  1  FAD_binding_2  FAD binding domain
    8.8e-16   58.4   2.7    2.7e-15   56.8   2.7    1.8  1  DAO            FAD dependent oxidoreductase
    6.8e-10   38.9   1.0      3e-09   36.7   0.7    1.9  2  FAD_oxidored   FAD dependent oxidoreductase
    1.6e-08   34.1   0.0    6.8e-05   22.2   0.1    3.0  3  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    8.5e-07   28.0   1.1    5.4e-05   22.1   2.9    2.1  2  HI0933_like    HI0933-like protein
    1.5e-05   25.1   2.5    1.5e-05   25.1   2.5    2.7  3  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0001   21.7   2.0     0.0012   18.2   2.4    2.2  2  FAD_binding_3  FAD binding domain
    0.00011   21.6   3.1    0.00023   20.5   3.1    1.4  1  Thi4           Thi4 family
     0.0014   18.0   2.4        0.3   10.3   0.0    3.2  3  Amino_oxidase  Flavin containing amine oxidoreductase
  ------ inclusion threshold ------
      0.025   13.8   0.3       0.05   12.8   0.3    1.4  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.026   13.6   4.2      0.072   12.2   4.6    1.5  2  GIDA           Glucose inhibited division protein A
       0.03   13.6   4.0      0.046   13.0   4.0    1.2  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.093   13.3   0.4        2.5    8.7   1.6    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.24   10.4   2.4        1.6    7.7   2.2    2.0  2  Lycopene_cycl  Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.9   6.2  6.9e-107  8.9e-104       1     417 []       8     540 ..       8     540 .. 0.95

  Alignments for each domain:
  == domain 1  score: 347.9 bits;  conditional E-value: 6.9e-107
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    Dv+V+GsG+AGL+AA++aa +G++v+v ek+++ gg++aws+G+++++++p +++ gi++  ++ +t+++++++++a+  + ++f++ +pe+v+++
     CTQ26730.1   8 DVLVVGSGAAGLSAAVTAAMHGASVMVAEKASVLGGTSAWSGGWLWIPRNPLARAEGIDEAADAPLTYLQHEMGGEAADIRLQTFLRYGPEMVEFF 103
                    9*********************************************************************************************** PP

                    HHT.T----B.............CCTS.......SB-EEE-TT-SST.........................................EEEE-.ST CS
  FAD_binding_2  97 eel.gvpfsr.............tedg.......pvdvrelGglsat.........................................artlhdaa 130
                    ++   v+f               + +g       p+d+r lG++ ++                                          r++++++
     CTQ26730.1 104 HQRtAVQFLSgsampdfhpspgaA-NGgrsvtaqPYDGRLLGDWLHRlrppletislggmgiaggadmahffnatrsprsalyaarrlLRHGWQRL 198
                    ***955555555576677777752.335777777******************************************************9******* PP

                    T-.......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG...............GSSSBS CS
  FAD_binding_2 131 darr.etlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgr.....allkellgaaaeaett 220
                    +a r ++lv+g+al+arl++sa++agv+fq ++++++L++   +v+Gav++  ++g+e  ++a avvla+gGf++     a++ ++++++  + + 
     CTQ26730.1 199 RAGRgQHLVNGNALVARLLRSALDAGVRFQLNAPVVRLLQGPPGVSGAVLR--SDGGEIHVEAGAVVLACGGFPHdrqrlAQVVPHAAEGYGHFSA 292
                    ****************************************999********..*************************999999************ PP

                    SGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTB....B--THHHHTT-EEE-TTSSBTHGGGS-HHHHHHHHH.HHHHTTTSCCB CS
  FAD_binding_2 221 napavtGdglalalragaalnddrmeevqfhPtslvpirdgsgi....LitealrgeGgilvdkdGrrFmnelasrdvvsrailekeiaeggsean 312
                    ++p + G+g++l++++g++  + + ++++++P+s v +++g+++    L+  +++++G+i+v  +G+rF+ne++s++++ +a l++++a g + ++
     CTQ26730.1 293 APPDNQGEGIRLGESVGGQFDTSLRHPLAWAPVSRVTLASGQQLmfphLV--ERAKPGVIAVLPNGKRFVNEADSYHDFIAALLAATPA-GDT-PQ 384
                    **************************************************..********************************66665.555.67 PP

                    EEEE-TT.........................................SSHHHHHHHSHHHHHHHHHCCT......S-TTTS........EEE... CS
  FAD_binding_2 313 vyldash........................................gldaegleatleaineeaangldkdfgrgidpadr........pip... 357
                     +l+a+                                          +da++l++t+e++n+ a +g+d+df+rg ++++r          p   
     CTQ26730.1 385 AWLLADRrtlrryglgharpfpftptawlrtgylqrgntlaelakqcAIDANALAETVERFNHFASTGEDVDFHRGASAYNRaqgdhqvtLGPlre 480
                    7*********************************************************************************88777766222679 PP

                    .......EEEEEEEES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 358 gpfyavkvvpaqhytmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    gpfyav++ p++++t+ G++tde++rvld+++qpipGLYA+G+++++ + g+++ gG++l
     CTQ26730.1 481 GPFYAVRILPGSLGTFSGLQTDEHARVLDEQQQPIPGLYAIGNDMSSVMRGYYPSGGITL 540
                    **********************************************************97 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   2.7   2.1e-18   2.7e-15       1     204 [.       8     270 ..       8     305 .. 0.68

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 2.1e-18
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH............HHHHHHHHHHHHH.HHHHHHHSST.TS.EE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas............elarlslealeel.releeelgid.id.yr 82 
                 dv+++G+G +Gls+A  +a +g  V + ek++ +g g+S  ++g+l+     l+ a+             ++++  ea + + + + + +g++ ++ ++
  CTQ26730.1   8 DVLVVGSGAAGLSAAVTAAMHGasVMVAEKASVLG-GTSAWSGGWLWIPRNPLARAEgideaadapltyLQHEMGGEAADIRlQTFLR-YGPEmVEfFH 104
                 8**********************************.**********987754555544455555555555557777777777555554.5777544666 PP

                 EEEEEEEESSHHHHHHHH...............................................HHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEE CS
         DAO  83 rtGllslaadeeeleald...............................................kllallleagldaelldaeevrelepalpgllga 134
                 +++ ++  +++  ++++                                                ++++  ++   + + l a  +r+l    +g++  
  CTQ26730.1 105 QRTAVQFLSGS-AMPDFHpspgaanggrsvtaqpydgrllgdwlhrlrppletislggmgiaggaDMAHFFNATRSPRSALYA--ARRLLR--HGWQR- 197
                 77777776554.35555577777777777777777777778777777777777666666666665444444433334344544..333332..23333. PP

                 EEETTEEEE.EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECT.EEE.EEEEEEEE--GGGH CS
         DAO 135 lfypdtgqv.dpakltaalaraaealGveilegtevtgleeedgkvwgve.rttp.gen.daadavVnaaGaws 204
                 l    + ++ +  +l+a l+r a ++Gv++ ++++v++l +   +v+g   r ++ ge+ ++a avV+a+G + 
  CTQ26730.1 198 LRAGRGQHLvNGNALVARLLRSALDAGVRFQLNAPVVRLLQGPPGVSGAVlR-SDgGEIhVEAGAVVLACGGFP 270
                 5555665556****************************84432345555444.444776557788******874 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.7   2.4e-12     3e-09       1      44 [.       8      51 ..       8     110 .. 0.84
   2 ?   -0.0   0.0      0.34   4.4e+02      33     140 ..     158     263 ..     155     267 .. 0.63

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 2.4e-12
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglva 44
                  Dv+VvG+g+aG+ AA++Aa +Ga+v++ e+  vlGG+++  ++ 
    CTQ26730.1  8 DVLVVGSGAAGLSAAVTAAMHGASVMVAEKASVLGGTSAWSGGW 51
                  9***********************************98655544 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.34
  FAD_oxidored  33 vlGGlltsglvatdignkaee.......qvvtgiareflerlrqrggarlkkrskwn.tfepevakavleemlaeagvtvllntrlvevekegkrie 121
                    lGG+  +g+   + ++ +++        +++++ r+  +rlr+         ++++ +     ++++l   l+  gv+  ln+ +v+  +  + + 
    CTQ26730.1 158 SLGGMGIAGGA-DMAHFFNATrsprsalYAARRLLRHGWQRLRA--------GRGQHlVNGNALVARLLRSALDA-GVRFQLNAPVVRLLQGPPGVS 244
                   68999988873.33333333334555555666666666666655........22222133445555666666655.999999999999999877899 PP

  FAD_oxidored 122 svtveskegrktirAkvfi 140
                   + +++s+ g+++++A  ++
    CTQ26730.1 245 GAVLRSDGGEIHVEAGAVV 263
                   9999776689999998776 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   5.3e-08   6.8e-05       2      34 ..       8      44 ..       7     110 .. 0.85
   2 !    7.3   0.0    0.0018       2.3     189     242 ..     216     273 ..     186     293 .. 0.72
   3 ?    0.4   0.0      0.24   3.1e+02     248     276 ..     497     523 ..     486     532 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5.3e-08
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve....legt 34
                 dv+v+G+G+AGl+aa t+a +ga v++ e    l+gt
   CTQ26730.1  8 DVLVVGSGAAGLSAAVTAAMHGASVMVAEkasvLGGT 44
                 89***********************999644444444 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0018
                  HHHHHHHTTEEEEESCEEEEEEETTEEEE..EEETTSCE..EEESEEEE-S-EEES-H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx..xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 189 leealekeGvevklgtsvkeidgngekle..vvledgee..idadlvvvavGvrpste 242
                  l +   + Gv+++l++ v+++ + +  ++  v  +dg e  ++a  vv+a G  p ++
   CTQ26730.1 216 LLRSALDAGVRFQLNAPVVRLLQGPPGVSgaVLRSDGGEihVEAGAVVLACGGFPHDR 273
                  4555556677777777777776666645556777777776667777777777666554 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.24
                  CT-EEEETTEEE--TTSBESSTTEEE-GG CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 248 lglelderggivvdeflrtnvpgiyaiGD 276
                  +gl++de+ ++  de+++  +pg+yaiG 
   CTQ26730.1 497 SGLQTDEHARV-LDEQQQP-IPGLYAIGN 523
                  67888666554.6777766.********5 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   2.9   4.3e-08   5.4e-05       2      44 ..       8      50 ..       7      51 .. 0.91
   2 ?    1.8   0.0      0.06        76     110     164 ..     211     268 ..     206     272 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.3e-08
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGG CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKilisGg 44
                 dv+v+G GaAGl aA++aa +g++V++ eka+ lg   + sGg
   CTQ26730.1  8 DVLVVGSGAAGLSAAVTAAMHGASVMVAEKASVLGGTSAWSGG 50
                 89*****************************999977777775 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.06
                  HHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE....TTEEEEESEEEE---- CS
  HI0933_like 110 divdallkelkeagvklrletevksvekeedgkfrvkt.k..seeeleadklvlAtGG 164
                   +v  ll+ + +agv+++l+  v ++ +   g+    + +  +e ++ea ++vlA+GG
   CTQ26730.1 211 ALVARLLRSALDAGVRFQLNAPVVRLLQGPPGVSGAVLrSdgGEIHVEAGAVVLACGG 268
                  578889999999*************98887775554443311444788999******9 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   2.5   1.2e-08   1.5e-05       1      35 [.      11      45 ..      11      48 .. 0.96
   2 ?   -2.7   0.0       5.7   7.3e+03      30      54 ..      79      94 ..      76     105 .. 0.49
   3 ?   -2.4   0.1       4.5   5.8e+03       7      19 ..     182     194 ..     182     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.2e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGra 35
                   +vG+G++Gl+aA ++a +g++v + ek++ lGG +
     CTQ26730.1 11 VVGSGAAGLSAAVTAAMHGASVMVAEKASVLGGTS 45
                   8********************************87 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.7
                   SSSGGG-EECETTCEECTS---EEE CS
  NAD_binding_8 30 rlGGraasyevpgvrvdygahifhg 54
                     GG aa++           ++f  
     CTQ26730.1 79 EMGGEAADI---------RLQTFLR 94
                   445555554.........4555544 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.5
                    HHHHHHHHHHCCT CS
  NAD_binding_8   7 sGlvaAylLakag 19 
                    s+l+aA++L ++g
     CTQ26730.1 182 SALYAARRLLRHG 194
                    6899999999987 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   2.4   9.2e-07    0.0012       1      34 [.       6      39 ..       6      45 .. 0.94
   2 ?    0.3   0.0      0.25   3.2e+02     107     163 ..     213     268 ..     169     282 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.2e-07
                   EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   ++dVl+VG+G aGl++a   +++G +v++ ek s
     CTQ26730.1  6 KVDVLVVGSGAAGLSAAVTAAMHGASVMVAEKAS 39
                   58****************************9976 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.25
                    HHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEE.E--G CS
  FAD_binding_3 107 leriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlv.GaDG 163
                    + r L+ +a  +g++++ ++ v+ l+q   gv+  v+ ++ ge+  v+a  +v ++ G
     CTQ26730.1 213 VAR-LLRSALDAGVRFQLNAPVVRLLQGPPGVSGAVLRSDGGEI-HVEAGAVVlACGG 268
                    344.555568999************************9988888.8988766535555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   3.1   1.8e-07   0.00023      17      63 ..       6      52 ..       2      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.8e-07
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--T.TTTTTSTT CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailersvspGG.GawlGGql 63
                + Dv++vG+G++GL+aa + a + +  v++ e+   +GG  aw GG l
  CTQ26730.1  6 KVDVLVVGSGAAGLSAAVTAAMH-GASVMVAEKASVLGGtSAWSGGWL 52
                68*****************9999.********9888877358****87 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.8     0.022        28       2      28 ..      17      43 ..      16      48 .. 0.95
   2 !   10.3   0.0   0.00024       0.3     193     260 ..     195     266 ..     169     269 .. 0.75
   3 ?    1.1   0.0      0.14   1.8e+02     395     440 ..     493     532 ..     487     538 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.022
                   HHHHHHHHHHHTTEEEEEEESSSSSBT CS
  Amino_oxidase  2 aGLaaArqLlsaGfdVtvlEardrvGG 28
                   aGL+aA + + +G +V v E  + +GG
     CTQ26730.1 17 AGLSAAVTAAMHGASVMVAEKASVLGG 43
                   9*************************9 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00024
                    CHHHHHTSCCCEETTHTHHHHHHHHH.TTTTEEEETSEEEEEEEEETTC...EEEEETTSTEE..EESEEEE-S CS
  Amino_oxidase 193 welegfggslllprgGlsqlpealae.elrgldirlntrVkeikregdg...vtvtledgevv..eaDaVvvTv 260
                    w++   g+++ l+ +G + +++ l +    g++++ln++V ++ +++ g     ++ +dg ++  ea aVv+++
     CTQ26730.1 195 WQRLRAGRGQHLV-NGNALVARLLRSaLDAGVRFQLNAPVVRLLQGPPGvsgAVLR-SDGGEIhvEAGAVVLAC 266
                    5555556666665.7877777777778899***************65553314444.56666779*******99 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.14
                    SSSEEE.BTTHHHHHHHHHHCHHCSTTEEE.SGGGCTTTTTSHHHH CS
  Amino_oxidase 395 rgsysyvsvgpghedydplakpegdprlffAGehtsreypgtvegA 440
                     g++s  ++  +h +  + +++ ++p+l+  G+  s+    ++ g 
     CTQ26730.1 493 LGTFSGLQTD-EHARVLDEQQQ-PIPGLYAIGNDMSS----VMRGY 532
                    6899999999.68888888888.9**********994....44444 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   3.9e-05      0.05       1      32 [.      10      40 ..      10      48 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgni 32
                 +++G G+aGl+aa+++  +g  ++++ Ek+++
   CTQ26730.1 10 LVVGSGAAGLSAAVTAAMHGA-SVMVAEKASV 40
                 69*******************.79*****976 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.6   5.6e-05     0.072       1      28 [.       8      35 ..       8      47 .. 0.87
   2 ?   -3.5   0.0       3.2   4.1e+03     131     152 ..     247     270 ..     234     279 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.6e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi 28
                dv V+G G AG+ AA++aa  Ga+v+  
  CTQ26730.1  8 DVLVVGSGAAGLSAAVTAAMHGASVMVA 35
                79**********************9865 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.2
                 EEETTS-EEEEC..EEEE--TT-B CS
        GIDA 131 vvtedgetikak..avviatGtfl 152
                 v+ +dg +i+ +  avv+a G f 
  CTQ26730.1 247 VLRSDGGEIHVEagAVVLACGGFP 270
                 555555554443349******985 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   4.0   3.6e-05     0.046      29      59 ..       7      37 ..       1      41 [. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.6e-05
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEES CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDv 59
                   vlv+G G aGl+A+ ta+  ga+V+v ++
   CTQ26730.1  7 VDVLVVGSGAAGLSAAVTAAMHGASVMVAEK 37
                 679************************9886 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.6    0.0019       2.5       2      34 ..       9      41 ..       8      46 .. 0.91
   2 ?    0.3   0.0      0.85   1.1e+03      44      78 ..     214     248 ..     204     252 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0019
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkl 34
                v+vvG+G  gl +A ++a +g++V v e ++ l
  CTQ26730.1  9 VLVVGSGAAGLSAAVTAAMHGASVMVAEKASVL 41
                89************************9988765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.85
                 HHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  44 kilqeklekngievllntkveeiegsedgvesvkl 78 
                 ++l ++  + g+++ ln+ v+++ + + gv++ +l
  CTQ26730.1 214 ARLLRSALDAGVRFQLNAPVVRLLQGPPGVSGAVL 248
                 4556666677**********999888877766665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   2.2    0.0012       1.6       1      44 [.       8      47 ..       8      51 .. 0.78
   2 ?    0.2   0.0      0.24     3e+02      78     145 ..     201     272 ..     187     290 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnnyvW 44
                   Dv+v+G+G+Agls A     a  g +v++ e +  l  ++   W
     CTQ26730.1  8 DVLVVGSGAAGLSAAVTA--AMHGASVMVAEKASVL--GGTSAW 47
                   9************99877..8899999887655444..555555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.24
  Lycopene_cycl  78 graYgrvsskrlkeellerlvengvkl.leakvesveeeeageslvvl..eggr.kirarlvvdarglaslk 145
                    gr  + v+ + l ++ll++  ++gv++ l+a v +  + + g s +vl  +gg+ +++a +vv a g +  +
     CTQ26730.1 201 GRGQHLVNGNALVARLLRSALDAGVRFqLNAPVVRLLQGPPGVSGAVLrsDGGEiHVEAGAVVLACGGFPHD 272
                    566677889999999****99999998569999999999886666655225566899999999999944443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 4403.76
//
Query:       CTQ26731.1  [L=106]
Description: NIPSNAP [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-32  111.7   0.2    1.8e-32  111.6   0.2    1.0  1  NIPSNAP   NIPSNAP
  ------ inclusion threshold ------
      0.089   12.5   0.2       0.17   11.6   0.2    1.4  1  DUF2914   Protein of unknown function (DUF2914)


Domain annotation for each model (and alignments):
>> NIPSNAP  NIPSNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.2     2e-36   1.8e-32       1     102 []       3     104 ..       3     104 .. 0.99

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 2e-36
                 EEEEEEEE-TT-HHHHHHHHHHTHHHHHHHHH--EEEEEEEEESBSSEEEEEEEES-HHHHHHHHHHHHH-HHHHHHHHHHHTT..EEEEEEEEEEE-T CS
     NIPSNAP   1 yelrtYtlkpgklaeflerfareiiaiqekhggeliGyfaseiGalnqvlhlwaydslaarearraalaadpeweaavekavdldliksmesrilkpts 99 
                 ye rtYt++p k+a++l+ +++ + a+q +h+g+liG+f++eiG  nqv+h+way+sl++r  rra++a+d +w+ +++k+++l ++++ es +++pt+
  CTQ26731.1   3 YEKRTYTINPLKMADWLALYQSDALAVQTDHLGQLIGFFFTEIGVVNQVVHIWAYESLDDRLVRRARMAQDERWQTFSRKNRELAAVERLESVLMRPTA 101
                 899************************************************************************************************ PP

                 T-S CS
     NIPSNAP 100 fsp 102
                 fsp
  CTQ26731.1 102 FSP 104
                 **8 PP

>> DUF2914  Protein of unknown function (DUF2914)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   1.9e-05      0.17       3      36 ..      50      84 ..      49      88 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.9e-05
     DUF2914  3 kvyhrWykd...dkevdeielsisreegyRtysskql 36
                +v+h W ++   d+ v ++++    +e+++t+s+k+ 
  CTQ26731.1 50 QVVHIWAYEsldDRLVRRARMAQ--DERWQTFSRKNR 84
                79******955335666666665..*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 846.79
//
Query:       CTQ26732.1  [L=558]
Description: putative electron transfer flavoprotein-NAD/FAD/quinone oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.8e-91  305.2   6.8    8.8e-91  305.0   6.8    1.0  1  FAD_binding_2  FAD binding domain
    1.1e-12   48.2   2.4    1.1e-12   48.2   2.4    2.5  2  DAO            FAD dependent oxidoreductase
    5.8e-09   35.8   2.6    5.8e-09   35.8   2.6    1.8  2  FAD_oxidored   FAD dependent oxidoreductase
    1.9e-06   26.9   4.8    6.8e-06   25.0   3.3    2.1  2  HI0933_like    HI0933-like protein
    0.00011   21.6   0.5      0.001   18.4   0.3    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00064   18.9   4.2      0.015   14.4   4.8    2.0  2  GIDA           Glucose inhibited division protein A
     0.0012   19.1   3.1     0.0012   19.1   3.1    2.4  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0015   17.8   2.3     0.0059   15.9   2.3    1.9  2  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.021   14.1   0.4      0.052   12.8   0.2    1.7  2  FAD_binding_3  FAD binding domain
      0.029   13.6   1.1      0.084   12.1   1.1    1.7  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.076   13.1   1.0        0.3   11.2   1.0    2.1  1  HDPD           Bacteriophage lambda head decoration protein D
       0.12   12.3   0.6       0.53   10.2   0.1    2.5  2  MarR_2         MarR family
       0.49    9.4   2.8       0.22   10.5   0.4    1.6  2  Lycopene_cycl  Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.0   6.8   6.4e-94   8.8e-91       1     417 []       5     538 ..       5     538 .. 0.95

  Alignments for each domain:
  == domain 1  score: 305.0 bits;  conditional E-value: 6.4e-94
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S.-HHHHHHHHHTHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldela.dqplveafveaapeavde 95 
                    DviViGsG+AG aAA++a  +Gl+v+++ek+++fgg++a+s+G ++++++ ++++ g+  s e++ t++++  +e+   ++l+eafv+a++ea+++
     CTQ26732.1   5 DVIVIGSGAAGFAAAVTACCKGLSVLMLEKAGQFGGTSAISGGAVWLYDTDQARAEGKSGSAEAMKTYLRTIIGEGQyREDLAEAFVSAGREALAF 100
                    9************************************************************************99998****************** PP

                    HHHT.T----B.........CCTS...........SB-EEE-TT-SST.........................................EEEE-.S CS
  FAD_binding_2  96 Leel.gvpfsr.........tedg...........pvdvrelGglsat.........................................artlhda 129
                    Le+   v++s          +e g           ++d+relG+  ++                                          r+++d+
     CTQ26732.1 101 LEREgAVKYSLrplspdyypDEPGavdvgralevvEYDGRELGDAFRDlrspppgmllfggmmvnrvdiqhfldmrrslrslahctrllLRYARDR 196
                    ****8677777777778877333356666788899************************************************************* PP

                    TT-.......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEES.EEEE-----GG...........GSSSBSSG CS
  FAD_binding_2 130 adarr.etlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirak.avvlatgGfgr.allkellgaaaeaettna 222
                     +++r ++l+ g+al+ar++++a++ g+ ++ + ++++L   +g v+G+++e   +g++++++a+ +vvla+gGf + al+ +++++  e+ t+++
     CTQ26732.1 197 VKYPRgTRLAMGNALIARMATTALRKGMNLRLNVNVLTLCEAQGAVRGVEIE--YQGQRETLHARrGVVLAAGGFAAgALAARYRPHTREHFTMSP 290
                    ****************************************************..9999999*********************************** PP

                    TT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTB....B--THHHHTT-EEE-TTSSBTHGGGS-HHHHHHHHH.HHHHTTTSCCBEE CS
  FAD_binding_2 223 pavtGdglalalragaalnddrmeevqfhPtslvpirdgsgi....LitealrgeGgilvdkdGrrFmnelasrdvvsrailekeiaeggseanvy 314
                    pa++G +l+la++  a+ + dr +++ ++P+s++ ++dgs      L+ ++++++G+i+v+++  rF+ne+ s+++++ a+  +     ++ a ++
     CTQ26732.1 291 PANDGAALHLAAALNAREGADRASNFFWAPVSVLTRADGSEErfphLV-TDRAKPGVIAVNQRAVRFVNESSSYHHFASAMQDAA----EN-APCF 380
                    *****************9999*****************999999*999.9********************************333....33.566* PP

                    EE-TT.........................................SSHHHHHHHSHHHHHHHHHCCT......S-TTTS........EEE..... CS
  FAD_binding_2 315 ldash........................................gldaegleatleaineeaangldkdfgrgidpadr........pip..... 357
                    l++++                                        glda++l +t++++n+ aa+g+d +f +g+++++r        p       
     CTQ26732.1 381 LLCDAqamkryglglarpapvnndalvaagylhkadtlaalaqqlGLDAQALSKTVARYNRDAAQGVDREFAKGGNSYNRamgdpghqP-Dacnap 475
                    ********************************************************************************888866551.055566 PP

                    ..........EEEEEEEES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 358 ...gpfyavkvvpaqhytmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                       +pfya+k++ ++++t  G++t+++++v + +g+pipGLYA+G+++ + + g+++++G++l
     CTQ26732.1 476 llsAPFYAIKLYTGDLGTSRGLVTTADAQVVNTEGHPIPGLYAVGNDMDSLMAGTYPGPGITL 538
                    8899********************************************************997 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   2.4     8e-16   1.1e-12       1     233 [.       5     294 ..       5     313 .. 0.66
   2 ?   -1.2   0.1      0.87   1.2e+03     320     344 ..     520     541 ..     482     546 .. 0.72

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 8e-16
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH........................HHH.HHHHHHHHHHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas........................ela.rlslealeelrele 72 
                 dv++iG+G +G ++A  +  +g  V+ lek+ ++g g+S  ++g ++ +  + + a+                        +la  ++ +++e l+ le
  CTQ26732.1   5 DVIVIGSGAAGFAAAVTACCKGlsVLMLEKAGQFG-GTSAISGGAVWLYDTDQARAEgksgsaeamktylrtiigegqyreDLAeAFVSAGREALAFLE 102
                 8*****************99999************.**********99664444444667889999999999999999999555366667777777777 PP

                 HH.........HSSTTSEEEEEEEEEESSHHHHHHHH.................................HHHHHHHHTTTTE.EEEEH.HHHHHHSTT CS
         DAO  73 ee.........lgididyrrtGllslaadeeeleald.................................kllallleaglda.ellda.eevrelepa 127
                 +e         l +d   +++G + +++        +                                 +         +d  ++ld  + +r l+  
  CTQ26732.1 103 REgavkyslrpLSPDYYPDEPGAVDVGR--------AlevveydgrelgdafrdlrspppgmllfggmmvN--------RVDIqHFLDMrRSLRSLAHC 185
                 7722222222223344444455555543........03333344444555554444555444444432221........22331244442224433322 PP

                 ST...TTS.EEEEETTEEEE.EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE...EECTEEEE..EEEE.EEE--GGGHH..HHHTTCTT CS
         DAO 128 lp...gll.galfypdtgqv.dpakltaalaraaealGveilegtevtgleeedgkvwgve...rttpgend..aada.vVnaaGawsd..llgllkel 213
                 ++   +++   + yp + ++    +l+a +a +a ++G +++++ +v  l e +g v gve   +   g+++  +a+  vV+aaG ++   l       
  CTQ26732.1 186 TRlllRYArDRVKYPRGTRLaMGNALIARMATTALRKGMNLRLNVNVLTLCEAQGAVRGVEieyQ---GQREtlHARRgVVLAAGGFAAgaL------- 274
                 22334555355779999888799999999********************97777999***87653...33322334557********85422....... PP

                 TSEEEEEEEEEEEEEECCTH CS
         DAO 214 dlpispvrgqvlvlkplsek 233
                   + +p   ++++++p+ + 
  CTQ26732.1 275 AARYRPHTREHFTMSPPAND 294
                 33459999999999887653 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.87
                 EEEETEE.EEEEEEECTTTHHHHHHH CS
         DAO 320 getpgvk.glylatGhsghGltlapa 344
                 g+    + + ++a  + g+G+tl+p+
  CTQ26732.1 520 GN----DmDSLMAGTYPGPGITLGPG 541
                 33....23677788889999999987 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   2.6   4.2e-12   5.8e-09       1      69 [.       5      75 ..       5     107 .. 0.73
   2 ?   -1.5   0.0      0.88   1.2e+03      88     137 ..     211     259 ..     159     277 .. 0.59

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 4.2e-12
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdig..nkaeeqvvtgiareflerlrq 69
                  Dv+V+G+g+aG+aAA++A+ +G +vl++e+ g  GG+++  ++a ++    +a+++  +g a+ +   lr 
    CTQ26732.1  5 DVIVIGSGAAGFAAAVTACCKGLSVLMLEKAGQFGGTSAISGGAVWLYdtDQARAEGKSGSAEAMKTYLRT 75
                  9***********************************98655554444311444447777777766666655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.88
  FAD_oxidored  88 vakavleemlaeagvtvllntrlvevekegkriesvtveskegrktirAk 137
                     ++++   l++ g+++ ln  +      ++ +++v++e + +r+t++A+
    CTQ26732.1 211 LIARMATTALRK-GMNLRLNVNVLTLCEAQGAVRGVEIEYQGQRETLHAR 259
                   344444444444.6666666655444443347788888654458888876 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   3.3   4.9e-09   6.8e-06       2      44 ..       5      47 ..       4      49 .. 0.97
   2 ?    0.9   0.0      0.11   1.5e+02     112     169 ..     212     273 ..     206     285 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4.9e-09
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGG CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKilisGg 44
                 dviviG GaAG+ aA++a  +g +Vl+leka ++g   +isGg
   CTQ26732.1  5 DVIVIGSGAAGFAAAVTACCKGLSVLMLEKAGQFGGTSAISGG 47
                 8***********************************9999997 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
                  HHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE....TTEEEEESE.EEE----SS-GG CS
  HI0933_like 112 vdallkelkeagvklrletevksvekeedgkfrvktk...seeeleadk.lvlAtGGlSiPk 169
                  +  + +++ ++g++lrl+ +v ++ + ++ +  v+++   ++e+l+a++ +vlA GG ++  
   CTQ26732.1 212 IARMATTALRKGMNLRLNVNVLTLCEAQGAVRGVEIEyqgQRETLHARRgVVLAAGGFAAGA 273
                  55566677788999999999999988777776666633346677777654999****88755 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.3   7.4e-07     0.001       2      35 ..       5      38 ..       4      94 .. 0.87
   2 ?    0.7   0.0      0.18   2.5e+02      59     109 ..     216     268 ..     180     277 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.4e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtc 35
                 dv+viG+G+AG+aaa t+  +g+ v+++e+ g++
   CTQ26732.1  5 DVIVIGSGAAGFAAAVTACCKGLSVLMLEKAGQF 38
                 8***************************865554 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.18
                  HHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC.TCEEEEEE.SEEEE---E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx.xxxxxxxxx RF
  Pyr_redox_2  59 vvkklnqgielllgeevvkidpgkkkvklekkke.gdeekiay.dklvlAtGs 109
                   ++ l++g+ l+l+++v+++ ++++ v   + +  g+ e++ +   +vlA G+
   CTQ26732.1 216 ATTALRKGMNLRLNVNVLTLCEAQGAVRGVEIEYqGQRETLHArRGVVLAAGG 268
                  33445555556666666666655555555332214555555553445566554 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   4.8   1.1e-05     0.015       1      36 [.       5      39 ..       5      49 .. 0.87
   2 ?    1.5   0.0     0.088   1.2e+02      88     157 ..     203     275 ..     194     307 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithkldtia 36
                dviViG G AG++AA++a  +G++vl++ +k ++++
  CTQ26732.1  5 DVIVIGSGAAGFAAAVTACCKGLSVLML-EKAGQFG 39
                8**************************9.6666655 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.088
                 EEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEET...TS-EEEEC.EEEE--TT-BT-EEE CS
        GIDA  88 lraqvdrelyskevteklenepnleiieeeveeliveekkvkgvvte...dgetikak.avviatGtflkgkih 157
                 +r ++   l+++  t +l++  nl +  +  +     ++ v+gv  e   + et++a+  vv+a+G f +g   
  CTQ26732.1 203 TRLAMGNALIARMATTALRKGMNLRLNVNVLTLC-EAQGAVRGVEIEyqgQRETLHARrGVVLAAGGFAAGALA 275
                 5567777788888888899989998877666555.5589999987662113455666569*******9998765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   3.1   8.5e-07    0.0012       1      36 [.       8      43 ..       8      50 .. 0.96
   2 ?   -3.2   0.1       7.5     1e+04       4      18 ..     267     281 ..     267     286 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.5e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36
                   ++G+G++G +aA ++  +g++vl lek+ ++GG +a
     CTQ26732.1  8 VIGSGAAGFAAAVTACCKGLSVLMLEKAGQFGGTSA 43
                   8********************************875 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.5
                    -SHHHHHHHHHHHCC CS
  NAD_binding_8   4 aGlsGlvaAylLaka 18 
                    +G+++ ++A++++ +
     CTQ26732.1 267 GGFAAGALAARYRPH 281
                    567777777776654 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.3   4.3e-06    0.0059      18      61 ..       4      47 ..       1      53 [. 0.86
   2 ?   -1.7   0.0         1   1.4e+03     193     225 ..     495     526 ..     484     534 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.3e-06
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTT.TS CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGGawl.GG 61
                 Dv+++G+G++G +aa +   k +l v++le+   +GG +   GG
  CTQ26732.1  4 WDVIVIGSGAAGFAAAVTACCK-GLSVLMLEKAGQFGGTSAIsGG 47
                59**************999999.**************98654155 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
                 ECB-HHHHHHHHHHHECEEETTEEE-THHHHHH CS
        Thi4 193 ksldaekaedaivkktrevvpnlyvaGmevaev 225
                 ++l + +a++++v++  + +p+ly+ G ++  +
  CTQ26732.1 495 RGL-VTTADAQVVNTEGHPIPGLYAVGNDMDSL 526
                 555.357999999999999*****999877665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   3.8e-05     0.052       3      34 ..       5      36 ..       3      42 .. 0.92
   2 ?   -2.4   0.0       1.6   2.2e+03     147     156 ..     250     259 ..     211     340 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.8e-05
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   dV+++G+G aG+ +a   + +G +v+++ek  
     CTQ26732.1  5 DVIVIGSGAAGFAAAVTACCKGLSVLMLEKAG 36
                   8****************************975 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.6
                    TTEEEEEEEE CS
  FAD_binding_3 147 tgeeetvrak 156
                    +g++et++a+
     CTQ26732.1 250 QGQRETLHAR 259
                    3444444443 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.1   6.1e-05     0.084       1      30 [.       7      35 ..       7      42 .. 0.91
   2 ?   -3.2   0.0       2.7   3.8e+03     256     276 ..     400     420 ..     396     431 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.1e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 i+iG G+aG aaa+++  +gl ++l lEk+
   CTQ26732.1  7 IVIGSGAAGFAAAVTACCKGL-SVLMLEKA 35
                 89*******************.7*****97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.7
  Pyr_redox_3 256 evkddvvlatGykpdlsflkk 276
                   v++d ++a Gy  +++ l++
   CTQ26732.1 400 PVNNDALVAAGYLHKADTLAA 420
                  678999999***999999885 PP

>> HDPD  Bacteriophage lambda head decoration protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.0   0.00021       0.3      45     113 ..     257     423 ..     190     427 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
        HDPD  45 a.................................................................................................. 45 
                                                                                                                    
  CTQ26732.1 257 Harrgvvlaaggfaagalaaryrphtrehftmsppandgaalhlaaalnaregadrasnffwapvsvltradgseerfphlvtdrakpgviavnqravr 355
                 044444444444445555555555556666666666666666666666666666666666777777777777777777777777777777777777777 PP

        HDPD  46 .....gklvpldpaatdGsqtAaaillypvdataadveavaiardaevngaaLvwpasvtdaqkaaalaalaa 113
                        + +++ a +d +++A + ll +++a   ++ ++ +ar+a vn +aLv  a++   +ka+ laala+
  CTQ26732.1 356 fvnesSSYHHFASAMQDAAENAPCFLLCDAQA--MKRYGLGLARPAPVNNDALV-AAGY--LHKADTLAALAQ 423
                 7777789999999999********99987777..689*****************.5555..666666666665 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       6.9   9.6e+03      16      30 ..     265     277 ..     262     277 .. 0.76
   2 ?   10.2   0.1   0.00038      0.53      21      44 ..     416     438 ..     397     442 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.9
                 CTTTSEEEHHHHHHH CS
      MarR_2  16 rrpgrdltvgelarr 30 
                 +++g  +++g+la+r
  CTQ26732.1 265 AAGG--FAAGALAAR 277
                 4566..999*99997 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00038
                 EEEHHHHHHHHTSSHHHHHHHHHH CS
      MarR_2  21 dltvgelarrlglsksavsrilkr 44 
                 d t ++la+ lgl+ +a+s++++r
  CTQ26732.1 416 D-TLAALAQQLGLDAQALSKTVAR 438
                 3.999*****************98 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.4   0.00016      0.22       1      33 [.       5      35 ..       5      58 .. 0.82
   2 ?   -3.0   0.1       2.1   2.9e+03     258     302 ..     268     312 ..     199     320 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieas 33
                   Dv+viG+G+Ag + A   t+  +gl+v+++e +
     CTQ26732.1  5 DVIVIGSGAAGFAAAV--TACCKGLSVLMLEKA 35
                   9**********87665..5599*******9865 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.1
  Lycopene_cycl 258 vlaiGaaaglvhPaTGYsvarslaeapllasaiaaalresslsar 302
                     +a+Ga a   +P T   +  s  + +  a  +aaal+ ++ ++r
     CTQ26732.1 268 GFAAGALAARYRPHTREHFTMSPPANDGAALHLAAALNAREGADR 312
                    445555555566666555555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 4140.80
//
Query:       CTQ26733.1  [L=273]
Description: putative shikimate 5-dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-20   71.0   0.0    1.5e-19   70.0   0.0    1.5  1  Shikimate_dh_N  Shikimate dehydrogenase substrate binding dom
    7.5e-05   22.2   0.1    0.00018   21.0   0.1    1.5  1  ThiF            ThiF family
  ------ inclusion threshold ------
      0.043   13.9   0.0       0.12   12.4   0.0    1.7  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   2.5e-23   1.5e-19       1      83 []      11      94 ..      11      94 .. 0.99

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 2.5e-23
                    EEESS-TT-SHHHHHHHHHHHCTSSEEEEEEE-SCCTHHHHHHHHHH.TTESEEEE-TTSCCHHHGGSSEE-HHHHHHT--SEE CS
  Shikimate_dh_N  1 viGnpikhSlSPaihnaafkalglngsyeafeveedelekaveelra.lglaGlnvTiPfKeaviplldelseeAkaigAvNti 83
                    viG+pi++++SP  +n++f++++++ + +++++ +d++ + +++lr  ++++G+ vT+P+K+++ +l+d+l+++A+++ AvN+i
      CTQ26733.1 11 VIGHPIAQVKSPDNFNRYFAEQHMDSVMIPVDIVPDAVAAYLNALRGwQNMTGVLVTVPHKQRAAALVDDLTPRARRLNAVNVI 94
                    89********************************************************************************98 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1     3e-08   0.00018      19      50 ..     126     157 ..     112     160 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3e-08
                 SEEEEE--SHHHHHHHHHHHHHTTTEEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  19 skvllvGaGglGsellknLalsGvgkltlvDn 50 
                 ++ ll G+Gg+Gs +++ L  +G+++l l+D+
  CTQ26733.1 126 KQALLSGCGGVGSAIAWGLCEAGIRRLALHDQ 157
                 6789**************************97 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.81   4.9e+03      39      56 ..      64      81 ..      30      95 .. 0.62
   2 ?   12.4   0.0     2e-05      0.12       9      81 ..     122     193 ..     113     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.81
                  EEEEESSHHHHHHHHHHH CS
  Shikimate_DH 39 vvvaNRtlerakelaeel 56
                  v+v+    +ra++l+++l
    CTQ26733.1 64 VLVTVPHKQRAAALVDDL 81
                  444444445555555554 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2e-05
                   ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvis 81 
                   + ++k++ll G G +++ +a  L+++g+++++    t +  ++l + l ++ + a++l+ l + l   d+++ 
    CTQ26733.1 122 QPAGKQALLSGCGGVGSAIAWGLCEAGIRRLALHDQTPATRQRLHDLLAEA-FPAVQLSALPDTLYGLDLLVN 193
                   56789***************************************9999555.9***********999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2001.44
//
Query:       CTQ26734.1  [L=252]
Description: Bacterial regulatory proteins, IclR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-24   85.3   0.1    6.2e-24   84.3   0.1    1.4  1  IclR      Bacterial transcriptional regulator
    4.9e-10   39.1   1.0    2.4e-09   36.8   0.5    2.2  2  HTH_IclR  IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.1   6.9e-28   6.2e-24       6     119 ..     130     243 ..     127     250 .. 0.93

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 6.9e-28
                 TTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEEEETT CS
        IclR   6 vsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvsgpta 104
                  +++G+r+p+++ta G++ La l+e+e e++l+r + ++ t++T+td ++L+e++a+vR+qGya  ++E e g+  +A+p+ d++g+  +A+s++++++
  CTQ26734.1 130 SVRLGERVPIFCTAGGRLWLASLPETECETVLQRITREQRTPYTVTDIASLMEKIAQVRRQGYATIEQEFEIGMLVLAVPLTDREGTWWGALSLTSHQS 228
                 5689*********************************************************************************************** PP

                 TSHHHHHHHHHHHHH CS
        IclR 105 rlteeelkeellalv 119
                 r++ e l ++ l l+
  CTQ26734.1 229 RTSLEALCRDHLDLL 243
                 **9988877666655 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.5   2.7e-13   2.4e-09       2      52 .]      14      64 ..      13      64 .. 0.97
   2 ?   -0.4   0.0      0.11     1e+03       9      26 ..     161     179 ..     159     181 .. 0.67

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 2.7e-13
                HHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE... CS
    HTH_IclR  2 ldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqdg 52
                l+++la++++++++ + lt+++ A+ +gl+ S+++R+L tL +++y+++dg
  CTQ26734.1 14 LQKGLALIQLFSKTCPKLTVAQTAKMSGLTQSAARRFLLTLLHERYLQTDG 64
                89**********************************************996 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.11
                 HCT-CTTBSS-.BHHHHHH CS
    HTH_IclR   9 Ldalaeapqel.tlselAr 26 
                 L+ ++++++   t++++A 
  CTQ26734.1 161 LQRITREQRTPyTVTDIAS 179
                 555665555544*****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1954.11
//
Query:       CTQ26735.1  [L=110]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        3.1    8.0   9.8         13    6.0   5.3    3.0  2  Tape_meas_lam_C  Lambda phage tail tape-measure protein (Tape


Domain annotation for each model (and alignments):
>> Tape_meas_lam_C  Lambda phage tail tape-measure protein (Tape_meas_lam_C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.3   0.00074        13      40      57 ..      68      85 ..      18      90 .. 0.74
   2 ?    3.1   0.3     0.006   1.1e+02       9      32 ..      85     108 ..      83     110 .] 0.80

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.00074
  Tape_meas_lam_C 40 laefvttGklsfsdlaes 57
                       +fvt+Gk+++ +++++
       CTQ26735.1 68 WETFVTAGKENWGSFVNT 85
                     4578888********986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.006
  Tape_meas_lam_C   9 rglaeYaesasnvagqvaeaatsa 32 
                       + +++   ++n+a+++++++t+a
       CTQ26735.1  85 TAGNSWNTFVNNAASDWNTFLTKA 108
                      566788888999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 896.38
//
Query:       CTQ26736.1  [L=295]
Description: protoheme IX farnesyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-62  209.0  21.0    8.4e-62  208.7  21.0    1.1  1  UbiA             UbiA prenyltransferase family
     0.0076   16.5   0.2     0.0076   16.5   0.2    3.5  4  DUF3040          Protein of unknown function (DUF3040)
  ------ inclusion threshold ------
      0.031   14.0   0.1      0.071   12.9   0.1    1.5  1  Gly-zipper_OmpA  Glycine-zipper domain
       0.53   10.2   7.0        4.1    7.3   0.0    4.1  3  COX14            Cytochrome oxidase c assembly


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.7  21.0   1.9e-65   8.4e-62       2     250 ..      18     266 ..      17     269 .. 0.94

  Alignments for each domain:
  == domain 1  score: 208.7 bits;  conditional E-value: 1.9e-65
        UbiA   2 lipalvglalaaggspdlllllllllgtllaaaaanalNdyfDreiDadmertpnRPlvsGrispkealifaivllilgllllalllnpltallgllal 100
                 li+++ g++la++g++d +l++++llg+ l+ a+++++N+y+Dr+iD++mert+nR lv+G+isp++ l++a++l+i+g++ll++++npl+ +lg++++
  CTQ26736.1  18 LISVIGGFLLASKGHIDYPLFVWTLLGVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPEASLVYATLLGIAGFMLLWFGANPLACWLGVMGF 116
                 689999********************************************************************************************* PP

        UbiA 101 lly.vvYtglrlKrrtllgtvvggiafglppllgwaavtgslsllalllalavflltwaialandlrdregDrkagiktlpvvlGrkaarillalllav 198
                 ++y  vY+ l++Kr++++gt++g+++++ pp++g++avtg+++  a++l++++ l+++++ +a ++ + +++++a+i+ lpvv G  +a++ ++ l++v
  CTQ26736.1 117 VVYvGVYS-LYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGDFDSGAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKN-HITLYIV 213
                 ********.9********************************8888888888899999999999999************************.6667777 PP

        UbiA 199 llla..llllllalllllylllalllaalallraarlvrrrdakkaakfflfls 250
                 ++++  l+l l ++ +  yl++a+++ +++l +a+r ++  d+k +a+++ f+ 
  CTQ26736.1 214 AFAVatLMLSLGGYAGYKYLVVAAAVSVWWLGMALRGYKVADDKVWARKL-FVF 266
                 7777778888888888999999999********99999999999999888.554 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   1.0      0.55   2.4e+03      53      81 ..      21      51 ..       8      55 .. 0.47
   2 !   16.5   0.2   1.7e-06    0.0076      40      81 ..      81     122 ..      60     125 .. 0.76
   3 ?    2.2   4.2     0.047   2.1e+02      44      79 ..     207     242 ..     197     249 .. 0.64
   4 ?   -3.3   0.1       2.6   1.1e+04      54      59 ..     266     271 ..     253     280 .. 0.46

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.55
     DUF3040 53 va.GllllvlGvaaaa........vvlgvvGfvvmlag 81
                v+ G+ll        +         v  ++G+ +++a 
  CTQ26736.1 21 VIgGFLLA-------SkghidyplFVWTLLGVSLVVAS 51
                33333333.......23444433455555555555554 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.7e-06
     DUF3040  40 slrrlavlavllfvaGllllvlGvaaaavvlgvvGfvvmlag 81 
                 s++  +v a+ll +aG++ll +G+   a++lgv+Gfvv ++ 
  CTQ26736.1  81 SPEASLVYATLLGIAGFMLLWFGANPLACWLGVMGFVVYVGV 122
                 556678999**************555559*********9875 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.047
     DUF3040  44 lavlavllfvaGllllvlG.vaaaavvlgvvGfvvml 79 
                  ++l +++f+++ l+l lG  a  +  l+v+ +v + 
  CTQ26736.1 207 HITLYIVAFAVATLMLSLGgYAGYK-YLVVAAAVSVW 242
                 3667777788877777777688777.45554444443 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 2.6
     DUF3040  54 aGllll 59 
                 + ++++
  CTQ26736.1 266 FSIVAI 271
                 222222 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.6e-05     0.071       4      31 ..     131     163 ..     129     163 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
  Gly-zipper_OmpA   4 AavGAalGAaaGAa.....vGaitGsaGtGAai 31 
                      ++ G+ +G+++GAa       a+tG+  +GAai
       CTQ26736.1 131 SVYGTLIGSLSGAAppvigYCAVTGDFDSGAAI 163
                      678*************9666799********98 PP

>> COX14  Cytochrome oxidase c assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00092       4.1      16      37 ..      37      58 ..      35      70 .. 0.91
   2 ?   -1.9   5.0      0.71   3.2e+03      20      41 ..      90     127 ..      85     135 .. 0.62
   3 ?    0.9   0.0     0.092   4.1e+02      15      27 ..     262     274 ..     251     283 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00092
       COX14 16 ltVltLiGvTlyaggllvytvy 37
                l+V tL+Gv+l+   ++v++ y
  CTQ26736.1 37 LFVWTLLGVSLVVASGCVFNNY 58
                689***************9855 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.71
       COX14  20 tLiGvTlyaggllvyt................vysygk 41 
                 tL+G  +++ ++++ +                vys+++
  CTQ26736.1  90 TLLGIAGFMLLWFGANplacwlgvmgfvvyvgVYSLYM 127
                 67777777777777665555555555555544555544 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.092
       COX14  15 rltVltLiGvTly 27 
                 +l+V+++++ T+ 
  CTQ26736.1 262 KLFVFSIVAITAL 274
                 7899999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2111.76
//
Query:       CTQ26737.1  [L=109]
Description: cytochrome o ubiquinol oxidase subunit IV [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-19   69.3  14.0    3.6e-19   68.9  14.0    1.1  1  COX4_pro         Prokaryotic Cytochrome C oxidase subunit IV
  ------ inclusion threshold ------
      0.072   13.6   7.6        2.5    8.7   3.3    2.1  2  DUF1218          Protein of unknown function (DUF1218)
       0.19   11.0   8.5       0.25   10.6   8.5    1.2  1  DUF3810          Protein of unknown function (DUF3810)
       0.52   10.6   4.4       0.73   10.1   2.0    2.0  2  DUF3040          Protein of unknown function (DUF3040)
       0.86    9.1  16.1        2.6    7.5   6.5    2.1  2  DUF3169          Protein of unknown function (DUF3169)
        1.8    7.2  12.5        1.8    7.2  12.5    1.0  1  Presenilin       Presenilin
        2.9    8.1  16.4        1.3    9.2   5.2    2.2  2  DUF5518          Family of unknown function (DUF5518)
        4.3    7.2  10.9          3    7.7   8.9    1.6  2  DUF2976          Protein of unknown function (DUF2976)


Domain annotation for each model (and alignments):
>> COX4_pro  Prokaryotic Cytochrome C oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9  14.0   1.6e-22   3.6e-19       2      72 .]      20      92 ..      19      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 1.6e-22
    COX4_pro  2 ivfvlllilTaiefalviiklg.kllaiiiilvlalvKavlillyFMHLkeekk.glrllaliflvflilllv 72
                ++f+l++ilT+i+fa+v  ++  +++++ +ilv a+v++v++l+yF+H++ ++  g++l+a+if+v++i+++v
  CTQ26737.1 20 TGFILSIILTVIPFAMVMSGSAsHAVILGTILVTAVVQIVVHLVYFLHMNSKSDeGWNLTAFIFTVIIIAIVV 92
                89***************776669*****************************88*****************97 PP

>> DUF1218  Protein of unknown function (DUF1218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0026       5.9      36      60 ..      19      43 ..       3      48 .. 0.83
   2 ?    8.7   3.3    0.0011       2.5       3      57 ..      51     102 ..      49     109 .] 0.70

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0026
     DUF1218 36 vvlfvlswivfaiAvalllvGaavn 60
                ++ f+ls+i+++i +a+++ G+a+ 
  CTQ26737.1 19 MTGFILSIILTVIPFAMVMSGSASH 43
                6679*****************9876 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0011
     DUF1218   3 vllllaqiiasvasgclccrkekspssakrtlavvlfvlswivfaiAvalllvGa 57 
                 ++ ++ qi+++++        ++++++  + +a ++ v+ + +++++ + +++  
  CTQ26737.1  51 LVTAVVQIVVHLVYFLH---MNSKSDEGWNLTAFIFTVIIIAIVVVGSIWIMWNL 102
                 67889999999974444...44455555788888888888888888888888865 PP

>> DUF3810  Protein of unknown function (DUF3810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   8.5   0.00011      0.25      27      83 ..      49     105 ..      16     108 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
     DUF3810  27 llivllillvilylvlaiklkkrkkkkkrllkvllrvllvllvvyflftllwglnYy 83 
                  ++v +++ +++ lv+++ ++++ ++  +l  ++ +v+++++vv+    ++w lnY+
  CTQ26737.1  49 TILVTAVVQIVVHLVYFLHMNSKSDEGWNLTAFIFTVIIIAIVVVGSIWIMWNLNYN 105
                 22233444444444444478888899999999************************8 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.0   0.00033      0.73      39      79 ..      16      56 ..       3      66 .. 0.66
   2 ?    0.9   0.0      0.25   5.5e+02      46      55 ..      85      94 ..      67     103 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00033
     DUF3040 39 rslrrlavlavllfvaGllllvlGvaaaavvlgvvGfvvml 79
                +s  +  +l+++l v+++++++ G a +av+lg + +++++
  CTQ26737.1 16 KSYMTGFILSIILTVIPFAMVMSGSASHAVILGTILVTAVV 56
                3344558999**************66665444444333333 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.25
     DUF3040 46 vlavllfvaG 55
                v+ ++++v+G
  CTQ26737.1 85 VIIIAIVVVG 94
                2333333333 PP

>> DUF3169  Protein of unknown function (DUF3169)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.0    0.0013       2.8     107     248 ..      22      66 ..       5      71 .. 0.56
   2 ?    7.5   6.5    0.0012       2.6     220     248 ..      78     106 ..      76     108 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0013
     DUF3169 107 ssvslilsfllilasyslkiyeeesssklvlifliaivlfliilflkiiiqvrivklikkmnPekkgsvydlkfqkkwlescDEaEkeiiykaaykayk 205
                 + +s                                                                                               
  CTQ26737.1  22 FILS----------------------------------------------------------------------------------------------- 25 
                 3333............................................................................................... PP

     DUF3169 206 ltnyvllillivlfllslvfgtgil.pilvvaliwlvntlsYlk 248
                    ++l+++ +++++ + + + +il  ilv+a++++v +l+Y++
  CTQ26737.1  26 ---IILTVIPFAMVMSGSASHAVILgTILVTAVVQIVVHLVYFL 66 
                 ...44444444445555555555555555555555555555554 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0012
     DUF3169 220 llslvfgtgilpilvvaliwlvntlsYlk 248
                 l++++f   i++i+vv+ iw++ +l+Y +
  CTQ26737.1  78 LTAFIFTVIIIAIVVVGSIWIMWNLNYNM 106
                 67999**99*****************976 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  12.5   0.00082       1.8      52     146 ..       9     103 ..       1     109 [] 0.89

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00082
  Presenilin  52 stgqkllnsllnalililvivvvtfllvlLykyrcykvikgwlilsslllLflvsglllaevlkaynipldyitlllllwnfgvvGviaifwkgp 146
                   ++  ++s ++++il ++++v+ f +v+        ++ + l+++++ +++ + ++l ++  ++  + l+++ ++++++ + vvG i i w+  
  CTQ26737.1   9 GASHGSVKSYMTGFILSIILTVIPFAMVMSGSASHAVILGTILVTAVVQIVVHLVYFLHMNSKSDEGWNLTAFIFTVIIIAIVVVGSIWIMWNLN 103
                 445567899999********************************************************************************754 PP

>> DUF5518  Family of unknown function (DUF5518)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.2   0.00056       1.3       4      39 ..      18      53 ..      15      57 .. 0.83
   2 ?    2.7   6.6      0.06   1.3e+02      56     103 ..      52      96 ..      50     103 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00056
     DUF5518  4 aliGavvaivlslllglllpsvgsllgllvgGlvaG 39
                 + G++++i+l++++++++ s +   ++++g +++ 
  CTQ26737.1 18 YMTGFILSIILTVIPFAMVMSGSASHAVILGTILVT 53
                578*************88888888889999999886 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.06
     DUF5518  56 aGligaipvlvlllvlllglvaaigglagfvallvalllvvllllvvl 103
                 +++++ i+v    lv +l + ++  + + ++a+++++++++++++  +
  CTQ26737.1  52 VTAVVQIVV---HLVYFLHMNSKSDEGWNLTAFIFTVIIIAIVVVGSI 96 
                 333333333...333333344566666666666666666655554444 PP

>> DUF2976  Protein of unknown function (DUF2976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.37   8.2e+02      29      44 ..      22      37 ..       5      43 .. 0.59
   2 ?    7.7   8.9    0.0013         3      20      82 ..      37      99 ..      33     103 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.37
     DUF2976 29 illgLvlaavaflaVa 44
                 +l ++l ++ f +V+
  CTQ26737.1 22 FILSIILTVIPFAMVM 37
                3445555555555554 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0013
     DUF2976 20 ikgylkdgvillgLvlaavaflaVakaalkkfneisegkaewgkfgltlvvGvvllvvviwLl 82
                ++g +  +vil+ +++ av  ++V    + + n  s++  +++ f+ t+++ ++++v  iw++
  CTQ26737.1 37 MSGSASHAVILGTILVTAVVQIVVHLVYFLHMNSKSDEGWNLTAFIFTVIIIAIVVVGSIWIM 99
                556667788888888888888888777778888888888899***************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1363  (0.0760221); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 786.52
//
Query:       CTQ26738.1  [L=203]
Description: cytochrome o ubiquinol oxidase subunit III [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-17   62.1  16.3    9.3e-17   61.7  16.3    1.1  1  COX3      Cytochrome c oxidase subunit III


Domain annotation for each model (and alignments):
>> COX3  Cytochrome c oxidase subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7  16.3   5.2e-21   9.3e-17      65     257 ..      15     201 ..       4     202 .. 0.88

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 5.2e-21
                 T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--GGGTSSSS-TT-----TTSHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHH CS
        COX3  65 lGehtlavqkGlklGlilfiisevllflalfwaffhsalsPtvelGatwpPvGikavnPlevPllntiillssGvtvtyahhsliegnrkkalkglllt 163
                 +G+h +  +k   +G+ ++++s+ ++f++lf ++           G++  P+G + +  l   l++t++ll s +t   a  ++ ++n++++++ l lt
  CTQ26738.1  15 HGHHDTGPMK--VFGFWIYLMSDCIIFATLFATYA--V----LVNGTAGGPTGKDIF-ELPFVLVETALLLFSSITYGMAAIAMYKNNKSQVVSWLALT 104
                 5666655555..379****************9983..3....34578888**96654.3555699********************************** PP

                 HHHHHHHHHHHHHHHHH...-SS-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--BSSB-HHHHHHHHHHHHHHHHHHHHHHHTTTTT CS
        COX3 164 illavlftllqaveyle...asftisdgvyGsvfylatGlhglhviigtillavallrllkyhltknhhlGfeaailywhfvdvvwlflyvsvywwg 257
                  l+++ f+++  +e+++     f    + + s+f++  G hglhv  g i +av ++++ +  lt++  +   +  l+whf+dvvw+ ++ +vy  g
  CTQ26738.1 105 WLFGAGFIGMEIYEFHHlimEGFGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVLMFQVSRRGLTSTNRTRILCLSLFWHFLDVVWICVFSVVYLMG 201
                 **************9863226899999*******************************************************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1549.77
//
Query:       CTQ26739.1  [L=663]
Description: cytochrome o ubiquinol oxidase subunit I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.4e-136  454.2  73.7   4.4e-136  454.2  73.7    2.6  3  COX1      Cytochrome C and Quinol oxidase polypeptide I


Domain annotation for each model (and alignments):
>> COX1  Cytochrome C and Quinol oxidase polypeptide I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.4     0.049   8.9e+02      76     108 ..      15      48 ..       2      52 .. 0.52
   2 !  454.2  73.7  2.5e-140  4.4e-136       1     431 [.      56     503 ..      56     504 .. 0.96
   3 !    1.3   0.6     0.007   1.3e+02      78     109 ..     606     638 ..     589     649 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.049
                 HHHHHHHHHHHHHHHHH.HHHHHHCSS-STTTTT CS
        COX1  76 prlnalsfwlvvlgvvl.lllsllgaattgwteY 108
                 p ++    +++++g++l ++++++g+++ +w e+
  CTQ26739.1  15 PIIVVTVAAIIIGGLALlAAITYFGKWSYLWNEW 48 
                 4333333334444444434444446666666665 PP

  == domain 2  score: 454.2 bits;  conditional E-value: 2.5e-140
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCTCT........-HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTSS-S-HHHHHHHHHHHHHHHH CS
        COX1   1 kigllylilalvlllvggllgllirlqlafp........dletynqlrtlHgnlmiflfatpfilgfgnylvplllgardlafprlnalsfwlvvlgvv 91 
                 ++g++y+i+a+v+ll g++ ++++r q+++          +++y q++t+Hg++mif++a+pf++g++n++vpl+lgard+afp+ln+lsfw++v+gv+
  CTQ26739.1  56 RLGIMYVIVAIVMLLRGFADAIMMRSQQVLAsageagflPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQLGARDVAFPFLNNLSFWFTVVGVI 154
                 579*************************7543344444457********************************************************** PP

                 HHHHHHH..CSS-STTTTTTTC.........SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCGS-HHHHHHHHHHHHHHHHCHHHHHHHHHC CS
        COX1  92 llllsll..gaattgwteYapls........evdlwllglllvvvssllgainfivtilkrrapgmtvaklplfvwavlatailillalpvlalallll 180
                 l++lsl   + a+tgw +Y+pls        +vd+w+++l l++++++l++inf+vti+k+rapgmt++k+p+f wa l++ ili+ ++p+l+++++ll
  CTQ26739.1 155 LVNLSLGvgEFAQTGWLAYPPLSgieyspgvGVDYWIWALQLSGIGTTLTGINFFVTIIKMRAPGMTMFKMPVFSWASLCANILIIASFPILTVTIALL 253
                 ******66445**************************************************************************************** PP

                 HHHHHCT.-SSSC...E-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHCCCCGGGGTTTSSS-HHHHHHHHHHH CS
        COX1 181 lldrslg.kffsp...gdplldqhlfWffgHpeVyililpalgivyyilpkfagrplfsyklsvlafililflsflvwaHHlfttglpewlkalgsvfs 275
                 +ldr+lg +ff+    g+ +++ +l W +gHpeVyil+lp++g++++i ++f++++lf+y+ +v+a++ i++lsf+vw+HH+ft+g  + ++a++ +++
  CTQ26739.1 254 TLDRYLGtHFFTNdmgGNMMMYINLIWAWGHPEVYILVLPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAGANVNAFFGITT 352
                 ***********77789*********************************************************************************** PP

                 HHTHHHHHHCCCHHHHCCTTS-CHCHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTBHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSB--HHH CS
        COX1 276 lliavPsglkvfnwlatlwrgsirfktpmlfflgfavlfiigGltGvllalpsvnyvvhntywvvaHfHlvllgavvfllfaaiyyllpkltgrmlser 374
                 ++ia+P+g+k+fnwl+t+++g+i f+++m++++gf+v+f +gG+tGvlla+p +++v+hn+ + +aHfH v++g+vvf++fa+++y++pk +g +l+e+
  CTQ26739.1 353 MIIAIPTGVKIFNWLFTMYQGRIVFNSAMMWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGLTYWWPKAFGFTLNET 451
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHTTHBSSSST--SCCCCHHHCHHHHHHHHHHHH CS
        COX1 375 laklhfwllfiGlvlmflpmhilGllgmprraadyksfletvpelqplnvlrtiggv 431
                 ++k +fw+++iG+++ f+p+++lG++gm+rr  +     +  p+++p+ v+++ g++
  CTQ26739.1 452 WGKRAFWFWIIGFFVAFMPLYVLGFMGMTRRLSQ-----QIDPQFHPMLVIAACGAA 503
                 *********************************4.....34689*********9986 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.007
                 HHHHHHHHHHHHHHHHHHHHH.CSS-STTTTTT CS
        COX1  78 lnalsfwlvvlgvvllllsll.gaattgwteYa 109
                 + +  +w++++++++++++++ +++++    Y+
  CTQ26739.1 606 MIWHIWWMAIASFIGIVATWIiKSFDEDVDYYV 638
                 445555555555555555554444555545555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1088  (0.0606838); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 4327.85
//
Query:       CTQ26740.1  [L=314]
Description: cytochrome o ubiquinol oxidase subunit II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-17   63.8   1.8    2.2e-17   62.7   1.8    1.6  1  COX_ARM          COX Aromatic Rich Motif
    2.7e-06   27.2   0.1      1e-05   25.4   0.0    2.0  2  COX2             Cytochrome C oxidase subunit II, periplasmic
      0.005   17.0   0.3     0.0092   16.1   0.3    1.5  1  COX2_TM          Cytochrome C oxidase subunit II, transmembra
     0.0052   17.2   0.5      0.012   16.1   0.5    1.5  1  FtsX             FtsX-like permease family
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.036   14.2   0.0    1.8  1  Cupredoxin_1     Cupredoxin-like domain
      0.067   13.3   4.3       0.12   12.5   4.3    1.4  1  TspO_MBR         TspO/MBR family
        2.2    8.3   3.8       0.55   10.2   0.3    1.8  2  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> COX_ARM  COX Aromatic Rich Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   1.8   8.7e-21   2.2e-17       1      45 [.     239     284 ..     239     285 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 8.7e-21
                 HC-S--B-SHH.HHHHCSS-SS--SEEES-B-TTHHHHHHHHTT-X CS
     COX_ARM   1 KaspktLdrde.YleLakPSennPVeyFssVdpgLFdsIvnkymep 45 
                 K+sp+++d ++ +++ a PSe+n+VeyFs+V+p+LF+++vnk+m++
  CTQ26740.1 239 KQSPNSMDSMAaFEKVAVPSEYNKVEYFSNVKPDLFKDVVNKFMSH 284
                 9*******************************************97 PP

>> COX2  Cytochrome C oxidase subunit II, periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.79     2e+03       2      19 ..     128     145 ..     127     151 .. 0.77
   2 !   25.4   0.0   4.1e-09     1e-05      44     113 ..     149     218 ..     143     224 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.79
        COX2   2 tikaiGhqwywsyeytdf 19 
                 ti+ +   w w + y++ 
  CTQ26740.1 128 TIEVVSMDWKWFFIYPEQ 145
                 778888889998888875 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 4.1e-09
        COX2  44 vdnrvvlpvetkirllvtaedvlhsfavpslgvkvdavpGrlnqvsllidreGvfyGqcselcGvnhssm 113
                 + n++  p + ++++ vt++ v+ sf +p lg ++ a+ G  +q+ l++d  G++ G  +   G   s m
  CTQ26740.1 149 TVNEIAFPANVPVHFKVTSNSVMNSFFIPRLGSQIYAMAGMQTQLHLIADEAGTYDGISASYSGPGFSGM 218
                 668999*************************************************998888777766666 PP

>> COX2_TM  Cytochrome C oxidase subunit II, transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   3.6e-06    0.0092      31      86 ..      51     107 ..      26     110 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.6e-06
     COX2_TM  31 ltlililVlyilvlilvefrrrknki.takylvhgqeiE.iiWTiiPalililialpS 86 
                 +++++i  +++ v   +++r+++++   + +  h++++E ++WT +P li++++a+  
  CTQ26740.1  51 MMIVVIPAVLMAVGFAWKYRASNKDAkYSPNWSHSNKVEaVVWT-VPILIILFLAVLT 107
                 2222222223333445566544333303345789****956799.5********9965 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.5   4.7e-06     0.012      10      83 ..      36     107 ..      35     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.7e-06
        FtsX  10 lGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllalla 83 
                 +G+++++++l  ++ +++++++a ++++g+++++     ++  ++  + + +  +    + + i+++l+la+l+
  CTQ26740.1  36 IGLEQRSLILTAFGLMMIVVIPAVLMAVGFAWKYRAS--NKDAKYSPNWSHSNKVEAVVWTVPILIILFLAVLT 107
                 8**************************9999999665..55556655677777777777777777777777776 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.4e-05     0.036       2      89 ..     100     204 ..      97     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
  Cupredoxin_1   2 laalavllllsskaa........aaaektveitvkdg............gfePskievkagekvklkiknkdktp.eefesedlgeekvlapgkttt 77 
                   +++lavl++ ++  +         ++ek ++i+v +               + ++i  +a+ +v +k++ +  ++  +f ++ lg +   + g +t+
    CTQ26740.1 100 ILFLAVLTWKTT--HalepskplVHDEKPITIEVVSMdwkwffiypeqgIATVNEIAFPANVPVHFKVTSN--SVmNSFFIPRLGSQIYAMAGMQTQ 192
                   333333333333..34688888889999999999999999**99999987899********9987777655..5548999***************** PP

  Cupredoxin_1  78 itiaplkpGeYe 89 
                   +++ ++++G+Y+
    CTQ26740.1 193 LHLIADEAGTYD 204
                   ***********8 PP

>> TspO_MBR  TspO/MBR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.3   4.6e-05      0.12       5      93 ..      59     154 ..      49     187 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.6e-05
                 HHHHHHHHHHH.HHHCCHHHHHHS---TTS--HHHHTTHHHHHHHHHHHHHHHHHHH................HHHHHHHHHHHHTSGGCTTTTTSGGG CS
    TspO_MBR   5 lpllvgllggl.ftkseeewykslrkPpwaPpdwvfppvWtvlyilmgvaaylvwka................lalyavqlvlnllwsplffglkspvl 86 
                 + ++vg++  + +++      ++   P+w+  + v ++vWtv  +++++ a+l+wk+                +   ++  v+ + w ++f +  + ++
  CTQ26740.1  59 VLMAVGFAWKYrASN-----KDAKYSPNWSHSNKVEAVVWTVPILIILFLAVLTWKTthalepskplvhdekpI---TI-EVVSMDWKWFFIY-PEQGI 147
                 223334444442222.....234459*******************************99999999988876542...33.5678888888877.55566 PP

                 HHHHHHH CS
    TspO_MBR  87 alvdiva 93 
                 a+v+ +a
  CTQ26740.1 148 ATVNEIA 154
                 6665555 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.3         5   1.3e+04      27      34 ..      14      21 ..      11      23 .. 0.57
   2 ?   10.2   0.3   0.00021      0.55      14      33 ..      39      58 ..      37      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5
                     XXXXXXXX CS
  Gram_pos_anchor 27 allggllL 34
                      l++g++L
       CTQ26740.1 14 SLIAGTVL 21
                     45555555 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00021
                     XXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor 14 engnifltaaGllallggll 33
                     e+ +++lta+Gl+++++  +
       CTQ26740.1 39 EQRSLILTAFGLMMIVVIPA 58
                     8999***********98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2413.15
//
Query:       CTQ26741.1  [L=491]
Description: muropeptide transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-34  118.5  64.0      1e-29  103.6  37.3    2.1  2  MFS_1     Major Facilitator Superfamily
    3.4e-12   45.7  10.5    5.1e-11   41.8   5.8    2.5  2  Acatn     Acetyl-coenzyme A transporter 1


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6  37.3   1.2e-33     1e-29       1     350 [.      17     366 ..      17     368 .. 0.87
   2 !   29.0  18.8   5.4e-11   4.8e-07      87     274 ..     318     486 ..     314     491 .] 0.73

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 1.2e-33
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalga.avaslplGrlsdrf.....Grrr.vlllglllfalglllllfa...sslwlll 89 
                 ll+++f s+l  ++++ +l  +++ + +i+  +ig+ ++l  +g+  v+ +++++l+dr+     Grrr +ll++ +l++l+++++ f    ++l +++
  CTQ26741.1  17 LLILGFASGLPLALTSGTLQAWMTVE-NIDLKTIGF-FSL--VGQaYVFKFLWSPLMDRYtppflGRRRgWLLTTQVLLLLAIAAMGFLepvTQLRWMA 111
                 57889999999999999999888777.788888887.222..233389************9*********************444446345588889** PP

       MFS_1  90 vlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 +l v+ ++++++   +  a+ +d+ p eerg + ++  +g+ lG+++  +l+ +la  +lgW+++++++a++++ +++   + l++++p+   + p+ +
  CTQ26741.1 112 ALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSGGLALWLAdRYLGWQGMYWLMAALLVPCII---ATLLAPEPSDVIPVPRSL 207
                 ****************************************************************************99...888899999999999999 PP

       MFS_1 188 ekgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgail.allagrlsdrlgrrrrlllalllll 285
                     ++a + p ++ ++ ++  w++l+ ++l  +g +++++l++++l    g++ + ++g++   l+l++ il al +g l++rl   r+ll+++ll  
  CTQ26741.1 208 ----EQAVAEP-LRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFD-AGEVGMVNKTLGLFATILgALYGGVLMQRLTLFRALLIFGLLQG 300
                 ....8899999.***********6666666666799999999999*********.455555555555555555588*********************** PP

       MFS_1 286 laalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslgga 350
                 ++ +g+ ll+ t++ + +++  v++   ++g+ ++++ al++ l+ ++ ++t+++l + ++++g++
  CTQ26741.1 301 VSNAGYWLLSITDKHLYSMATAVFFENlCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRV 366
                 ************888888776666666699999****************************99986 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 5.4e-11
       MFS_1  87 lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspk 185
                  ++ + ++  l++g++++a +al+  + +k+  +  ++llsa +++G +   +++g+++++ gW ++fyi+ +v+++ ++   lll+++++ +++++++
  CTQ26741.1 318 SMATAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPIAGWFVEAHGW-STFYIFSVVAAVPGIA--LLLLCRQTLEHTQRTA 413
                 5788999*********************************************************.5888888888888886..9999********9998 PP

       MFS_1 186 eeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls......glllaglllallalvgailallagrlsdrlgrr 274
                        p++ +p       +     + +al + ++g  +l ++l l++   l+++      gll++++l a+++       +l+g l+d l  r
  CTQ26741.1 414 SF----MPRSEFP-------QA----YALALGILTLGCLLLAVWLALLILNALDYTsfsflsGLLEVAALTAVGG-------ILFGGLLDYLALR 486
                 88....7777777.......33....3333333333555566666666677777776533344444444444444.......4445444444333 PP

>> Acatn  Acetyl-coenzyme A transporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   5.8   5.6e-15   5.1e-11       4     175 ..      16     164 ..      13     172 .. 0.81
   2 ?   -3.2   0.2      0.24   2.2e+03     424     456 ..     322     347 ..     299     374 .. 0.46

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 5.6e-15
       Acatn   4 lLvvLyllqGiPvGLafgtiPflLkslaketsftelgvfslatyPyslkilWsPivDslyskkiGrrrsWiiPvqlvsgilllvlglaiskglifegvd 102
                 +L++L +  G+P+ L+ gt+   +    +++  +++g+fsl+   y +k lWsP++D      +Grrr W++ +q++  + + ++g       ++e v 
  CTQ26741.1  16 ILLILGFASGLPLALTSGTLQAWMTV--ENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLTTQVLLLLAIAAMG-------FLEPVT 105
                 689999*************9988765..9*******************************************99975333333332.......333222 PP

       Acatn 103 dafhgeasekvlkvnilsLtlvflvLvllcatqDiavDgWaltiLskkslsyastaqtvGlnlGyflsftvfl 175
                               ++  ++ + +v+ +  a qDi  D+W  ++L  +  +  ++  ++G  lG ++s  + l
  CTQ26741.1 106 --------------QLRWMAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSGGLAL 164
                 ..............233344444566788899*******************99999*******9999865555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.24
       Acatn 424 tvqfvgisafhtriaDpvlgGtymtllntlsnl 456
                  v       f+ +++  + + ++++ll tl n 
  CTQ26741.1 322 AV-------FFENLCGGMGTAAFVALLMTLCNK 347
                 33.......333333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3770.50
//
Query:       CTQ26742.1  [L=192]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-54  181.7   2.9    8.4e-54  181.5   2.9    1.0  1  Lipoprotein_16  Uncharacterized lipoprotein
    3.2e-05   24.2   0.5    7.7e-05   23.0   0.5    1.7  1  LPAM_1          Prokaryotic membrane lipoprotein lipid attach
  ------ inclusion threshold ------
      0.025   14.2   0.0      0.062   12.9   0.0    1.6  1  DUF3562         Protein of unknown function (DUF3562)
      0.036   13.8   0.2        1.7    8.5   0.0    2.9  3  STN             Secretin and TonB N terminus short domain
      0.094   12.8   0.3       0.17   12.0   0.3    1.4  1  AcylCoA_DH_N    Acyl-CoA dehydrogenase N terminal


Domain annotation for each model (and alignments):
>> Lipoprotein_16  Uncharacterized lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.5   2.9   2.4e-57   8.4e-54       1     159 []      29     188 ..      29     188 .. 0.99

  Alignments for each domain:
  == domain 1  score: 181.5 bits;  conditional E-value: 2.4e-57
  Lipoprotein_16   1 Pkit.asanqtnqnatvslsskDsRsaqevakinegdgelallsasedvrlllqqalrqqlssqGfrignnannnleveveklladvkegtlryk 94 
                     Pkit ++++++ +++tvs++++D+R +q++ak+++ d++l++l+as+d+r+llq++l++q++s+G++ig+n++++l++ v+kl+adv++g++ry+
      CTQ26742.1  29 PKITlPQQDPSLMGVTVSINGADQRPDQALAKVTR-DNQLVTLTASRDLRFLLQEVLEKQMTSRGYMIGPNGAVDLQIIVNKLYADVSQGNVRYN 122
                     8899899****************************.*********************************************************** PP

  Lipoprotein_16  95 ikakvqlevtaenakgk.ltknynasaeregalsasnakiekalnkllsevlkeilnDpelqqflk 159
                     i++k+++ ++a++a+g+ +tkny+as+++ega++asn++i++a+n +l++ ++++++D++++ f+k
      CTQ26742.1 123 IATKADIAIIATAANGTkMTKNYRASYSVEGAFQASNKNIADAVNSVLTDTIADMAQDTSIHDFIK 188
                     ****************************************************************96 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.5   2.1e-08   7.7e-05       2      18 .]       3      19 ..       3      19 .. 0.97

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.1e-08
      LPAM_1  2 KKillalgalllLsGCs 18
                KKil+ l+a+++L+GC+
  CTQ26742.1  3 KKILFPLVAMFMLAGCA 19
                9***************6 PP

>> DUF3562  Protein of unknown function (DUF3562)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.7e-05     0.062      19      43 ..     163     187 ..     157     189 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.7e-05
     DUF3562  19 eelVsrlyedavaalaedARvlDYl 43 
                 +++V+  ++d++a  a+d +++D++
  CTQ26742.1 163 ADAVNSVLTDTIADMAQDTSIHDFI 187
                 689********************97 PP

>> STN  Secretin and TonB N terminus short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00046       1.7      12      38 ..      43      67 ..      37      69 .. 0.85
   2 ?   -1.0   0.0      0.43   1.5e+03      40      51 ..      86      97 ..      84      98 .. 0.81
   3 ?    1.7   0.0     0.065   2.3e+02      20      34 ..     157     171 ..     150     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00046
         STN 12 gnqtvslnignvtideaLdeLLkgtgL 38
                   tvs+n  ++ +d+aL+++ + ++L
  CTQ26742.1 43 V--TVSINGADQRPDQALAKVTRDNQL 67
                5..9****999**********998877 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.43
         STN 40 ykitgntirisp 51
                 ++t+++++i+p
  CTQ26742.1 86 KQMTSRGYMIGP 97
                5779******97 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.065
         STN  20 ignvtideaLdeLLk 34 
                   n++i++a + +L 
  CTQ26742.1 157 ASNKNIADAVNSVLT 171
                 5699*********96 PP

>> AcylCoA_DH_N  Acyl-CoA dehydrogenase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   4.7e-05      0.17       7      17 ..      74      84 ..      73      85 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.7e-05
  AcylCoA_DH_N  7 RDmrFvLyEvL 17
                  RD+rF+L EvL
    CTQ26742.1 74 RDLRFLLQEVL 84
                  9*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1492.53
//
Query:       CTQ26743.1  [L=105]
Description: regulator of penicillin binding proteins and beta lactamase transcription (morphogene) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-28   98.2   0.1      3e-28   97.9   0.1    1.1  1  BolA      BolA-like protein


Domain annotation for each model (and alignments):
>> BolA  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.1   1.7e-32     3e-28       1      76 []      11      84 ..      11      84 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 1.7e-32
        BolA  1 LtealkpehlevedeShkhaghaeaggetHFkvvivseaFegkslvarhRlvyalLkeelakgiHALslktktpee 76
                L++a++p +lev+deS++h+++  ag+e+HFkvv+vs++F+g++ ++rhR++y +L eel++ +HAL+l+t+t +e
  CTQ26743.1 11 LRAAFDPMYLEVVDESYRHNVP--AGSESHFKVVLVSDRFTGERFLNRHRMIYGTLTEELSNTVHALALHTYTIKE 84
                789*******************..9************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 812.10
//
Query:       CTQ26744.1  [L=79]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 650.06
//
Query:       CTQ26745.1  [L=432]
Description: peptidyl-prolyl cis/trans isomerase (trigger factor) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-42  144.0   0.6    3.7e-42  144.0   0.6    3.3  3  Trigger_N        Bacterial trigger factor protein (TF)
    1.1e-40  139.3  11.1    1.1e-40  139.3  11.1    2.5  2  Trigger_C        Bacterial trigger factor protein (TF) C-term
    1.9e-14   53.8   0.4    5.6e-14   52.2   0.4    1.8  1  FKBP_C           FKBP-type peptidyl-prolyl cis-trans isomeras
  ------ inclusion threshold ------
      0.013   15.3   2.4      0.024   14.4   1.4    2.1  3  SurA_N_3         SurA N-terminal domain
      0.081   13.3   1.4       0.14   12.5   0.1    2.1  2  DUF3811          YjbD family (DUF3811)
       0.11   12.9   0.7        5.5    7.4   0.0    3.0  3  DUF4172          Domain of unknown function (DUF4172)
        4.9    6.3   8.1       0.38    9.9   0.9    2.5  3  Arabinose_Isome  L-arabinose isomerase


Domain annotation for each model (and alignments):
>> Trigger_N  Bacterial trigger factor protein (TF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   0.6   1.4e-45   3.7e-42       1     140 [.       1     143 [.       1     144 [. 0.97
   2 ?    1.6   1.5      0.12   3.2e+02      52     132 ..     268     305 ..     203     374 .. 0.75
   3 ?   -2.2   0.2       1.9   4.8e+03      61      79 ..     392     411 ..     379     427 .. 0.54

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 1.4e-45
                 -EEEEEEEETTEEEEEEEE-HHHCHHHHHHHHHHHHTTS-BTTC-TT---CCCHHHHCTCCCHHHHHHHHHHCCCCCCCCCS..-EE.EE.E...EEET CS
   Trigger_N   1 mkvtvekleglkvkltvevpaeevekavekalkklakkvkipGFRkGkvPrsiiekrygkevleealeellnealeeaieeeklepvgqpei...elee 96 
                 m+v+ve+++gl +++t+++ a+ +e+av+ +l ++akkv+i+GFRkGkvP++i+ +ryg++v++++l +l+++++ +ai +ek++p+g p+    e++ 
  CTQ26745.1   1 MQVSVETTQGLGRRVTITIAADSIENAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRHFVDAIIKEKINPAGAPNYvpgEYKL 99 
                 9******************************************************************************************87654788 PP

                 TC.EEEEEEEEE--EEEE.XCCCSEEEEEXHHHHHHHHHHHHHH CS
   Trigger_N  97 gkdleftvevevkPevelgdykglevekeevevtdeevdeelee 140
                 g+d+++ ve+ev+Pevel+ ++ +evek++vevtd++vd +le+
  CTQ26745.1 100 GEDFTYAVEFEVYPEVELQGLDAIEVEKPVVEVTDADVDTMLET 143
                 99****************88*********************997 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
                 CCHHHHCTCCCHHHHHHHHHHCCCCCCCCCS..-EE.EE.EEEETTC.EEEEEEEEE--EEEE.XCCCSEEEEEXHHHHHH CS
   Trigger_N  52 siiekrygkevleealeellnealeeaieeeklepvgqpeieleegkdleftvevevkPevelgdykglevekeevevtde 132
                 + ++k++++e++  + + + ++a+e  +++++++                                           v  +
  CTQ26745.1 268 AEVRKNMERELKGAVRNRVKSQAIEGLVKANEID-------------------------------------------VPAA 305
                 4456666666666666666666666666666653...........................................3333 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.9
                 C.CHHHHHHHHHHCCCCCCC CS
   Trigger_N  61 e.vleealeellnealeeai 79 
                 + +++++ + +l+e+  ea+
  CTQ26745.1 392 KeLMDNMRNVALEEQAVEAV 411
                 33555555555555555544 PP

>> Trigger_C  Bacterial trigger factor protein (TF) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.29   7.4e+02     109     127 ..     130     148 ..     121     165 .. 0.80
   2 !  139.3  11.1   4.2e-44   1.1e-40       1     161 [.     262     412 ..     262     413 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.29
                 ----HHHHHHHHHHHCCCT CS
   Trigger_C 109 ievteeelkeeleelasqy 127
                 +evt+++++++le l +q 
  CTQ26745.1 130 VEVTDADVDTMLETLRKQQ 148
                 8999999999999998864 PP

  == domain 2  score: 139.3 bits;  conditional E-value: 4.2e-44
                 CHHHHHHHHCCCCHHHHHHHHHHHHHCCCHCCCGCGEEEEE-HHHHHHHHHHHHHHHHHCT...TSSHHCHHHHHCTHCCCHCHHCHHHHHHHHHHHHH CS
   Trigger_C   1 tLeeLkedlrkqleeekeeatkeelkealldkLvekaeidiPeslveeeidrllrqakqqleqqGldleeylelsgsseeelreelkeeAekrVklgLv 99 
                 +++ L++++rk++e+e++ a+++++k+++++ Lv+++eid+P +l++ eid l+rqa+q++   G+++++         e +re ++e+A++rV +gL+
  CTQ26745.1 262 SVAGLRAEVRKNMERELKGAVRNRVKSQAIEGLVKANEIDVPAALIDSEIDVLRRQAAQRF---GGNEKQ-------ALELPRELFEEQAKRRVVVGLL 350
                 6789*********************************************************...******.......9********************* PP

                 HHHHHHHTT----HHHHHHHHHHHCCCTTSXHHHHHHHHHHXHHHH.HHHHHHHHHHHHHHHC CS
   Trigger_C 100 leeiakeekievteeelkeeleelasqygmepeevkeflkkneqls.alkedileekvvdlll 161
                 l+e++++++++++ee++k+ +ee+as+y+ +p+ev+ef++kn++l+ ++++  lee++v+++l
  CTQ26745.1 351 LGEVIRTNELKADEERVKALIEEMASAYE-DPSEVVEFYSKNKELMdNMRNVALEEQAVEAVL 412
                 *****************************.******************************997 PP

>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.4   2.2e-17   5.6e-14       7      88 ..     160     232 ..     155     240 .. 0.90

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 2.2e-17
                 TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEE CS
      FKBP_C   7 egdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLv 88 
                   d+Vt++++g + dg++f++   +a+++ + +G+g++i+Gfe++++g k+Ge+ t+ ++++++Y++++l+g      +   
  CTQ26745.1 160 AEDRVTIDFTGSV-DGEEFEGG--KASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKG------KAAK 232
                 679**********.********..*********************************************976......4444 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.7   6.9e+03      81      95 ..      60      74 ..      46      82 .. 0.64
   2 ?   -3.8   0.0       3.8   9.6e+03       1       9 [.     140     148 ..     126     151 .. 0.63
   3 ?   14.4   1.4   9.3e-06     0.024      37     122 ..     289     376 ..     279     422 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.7
    SurA_N_3 81 lglrqqvldqlidea 95
                + +rq+vl +l+++ 
  CTQ26745.1 60 ASVRQDVLGDLMSRH 74
                455666666666665 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.8
    SurA_N_3   1 Mleflrkna 9  
                 Mle+lrk++
  CTQ26745.1 140 MLETLRKQQ 148
                 555555554 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 9.3e-06
    SurA_N_3  37 sg.nsvakVngekIsraefqqayrrqleqlrqqlggnldaellde.lglrqqvldqlidealllqeakklglsvsdeevakeiasipa 122
                 ++ +  +k n+ ++ +a ++++++  ++q++q++ggn +++l    + +++q+ ++++   ll +  + ++l++ +e v++ i+++ +
  CTQ26745.1 289 QAiEGLVKANEIDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPrELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKALIEEMAS 376
                 3346699***************************996665554444999**********************************88763 PP

>> DUF3811  YjbD family (DUF3811)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   5.7e-05      0.14      23      57 ..     269     303 ..     259     323 .. 0.83
   2 ?   -3.4   0.1       5.1   1.3e+04      55      63 ..     408     416 ..     391     425 .. 0.45

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.7e-05
     DUF3811  23 rarkklgreLtNaEqNrikdeaidkimaereaaak 57 
                   rk+ +reL  a +Nr+k +ai+ ++++ e    
  CTQ26745.1 269 EVRKNMERELKGAVRNRVKSQAIEGLVKANEIDVP 303
                 569************************99886655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.1
     DUF3811  55 aakkaraek 63 
                 + ++ +++k
  CTQ26745.1 408 VEAVLAKAK 416
                 222222222 PP

>> DUF4172  Domain of unknown function (DUF4172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0022       5.5      15      65 ..     242     294 ..     239     303 .. 0.79
   2 ?    2.3   0.1      0.08   2.1e+02      20      59 ..     338     377 ..     333     388 .. 0.81
   3 ?   -2.1   0.0       1.9   4.9e+03      12      45 ..     388     421 ..     380     431 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0022
     DUF4172  15 aealaellaevrrkqGrllGklealgfelreea..lletlteevvksseIEGe 65 
                 +++l el +e+ ++ G   G+++ l  e r+++   l+  + + vks++IEG 
  CTQ26745.1 242 ERELPELTEEFIKRFGVEDGSVAGLRAEVRKNMerELKGAVRNRVKSQAIEGL 294
                 6678888888999999999999999777666551167889***********95 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.08
     DUF4172  20 ellaevrrkqGrllGklealgfelreealletlteevvks 59 
                 e  a+ r   G llG++ ++++ + +e ++++l+ee+ + 
  CTQ26745.1 338 EEQAKRRVVVGLLLGEVIRTNELKADEERVKALIEEMASA 377
                 5556677778999999999999999999999999998765 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.9
     DUF4172  12 twdaealaellaevrrkqGrllGklealgfelre 45 
                   ++++l++ +++v+ ++  + + l++ + ++++
  CTQ26745.1 388 YSKNKELMDNMRNVALEEQAVEAVLAKAKVSEKA 421
                 4556666677777666666666666665555554 PP

>> Arabinose_Isome  L-arabinose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.26   6.5e+02     202     241 ..     116     155 ..     105     169 .. 0.71
   2 ?   -1.8   0.1      0.54   1.4e+03     211     256 ..     233     276 ..     226     299 .. 0.67
   3 ?    9.9   0.9   0.00015      0.38     209     280 ..     352     428 ..     314     431 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.26
                      EEEEE-HHHHHHHHHTS-HHHHHHHHHHHHHHSEE-GGGS CS
  Arabinose_Isome 202 svntygvgdlvevveavsdeevdalveeyekkYelaeelk 241
                      + +++   ++ + v +v+d++vd+++e+ +k+ +  +e +
       CTQ26745.1 116 ELQGLDAIEVEKPVVEVTDADVDTMLETLRKQQATWKEKE 155
                      5555556677788999*********999988876665544 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.54
                      HHHHHHTS-HHHHHHHHHHHHHHSEE-GGGSTTSTTHHHHHHHHHH CS
  Arabinose_Isome 211 lvevveavsdeevdalveeyekkYelaeelkeeeereeslreaari 256
                       v ++++v+++e+ +l+ee+ k++ +++   ++   ++++r++ + 
       CTQ26745.1 233 FVINLKKVEERELPELTEEFIKRFGVEDGSVAGL--RAEVRKNMER 276
                      5667899999999999999999999988755433..3334444444 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00015
                      HHHHHHHH.TS-HHHHHHHHHHHHHHSE....E-GGGSTTSTTHHHHHHHHHHHHHHHHHHHHHT-SEEEE-TT--T CS
  Arabinose_Isome 209 gdlvevve.avsdeevdalveeyekkYe....laeelkeeeereeslreaarielglrkfLeekgfkaftttFedlg 280
                      g+++++ e ++++e v+al+ee++++Ye    + e  ++++e ++++r+ a +e +++++L + +++  +t+F++l 
       CTQ26745.1 352 GEVIRTNElKADEERVKALIEEMASAYEdpseVVEFYSKNKELMDNMRNVALEEQAVEAVLAKAKVSEKATSFNELM 428
                      555554442567889999999999999722225555678888899999**************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3445.85
//
Query:       CTQ26746.1  [L=207]
Description: ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) (Caseinolytic protease) (Protease Ti) (Heat shock protein F21.5) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-89  298.6   0.1    1.8e-89  298.4   0.1    1.0  1  CLP_protease  Clp protease


Domain annotation for each model (and alignments):
>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.4   0.1     1e-93   1.8e-89       2     181 ..      26     205 ..      25     206 .. 0.99

  Alignments for each domain:
  == domain 1  score: 298.4 bits;  conditional E-value: 1e-93
                   SSSECHHHHHHHHTTTEEEEES-BSHHHHHHHHHHHHHHHHH-SSS-EEEEEEE--B-HHHHHHHHHHHHHSSS-EEEEEEEEEETHHHHHHHTS-T CS
  CLP_protease   2 kgeraydiysrllkeriiflgseiddevankiiaqLllLeaedpdkdillyinspGGsvtaglaIydtmqyikpdvsticlGlaaSmgslllaagek 98 
                   +ger++diysrllker+ifl+++++d++an i+aq+l+Leae+p+kdi+lyinspGG +tag++Iydtmq+ikpdvstic+G+aaSmg++ll+ag+k
    CTQ26746.1  26 RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAK 122
                   899********************************************************************************************** PP

                   TGEEEETTEEEEES-TEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCSTEEEEHHHHHHHTSSSEE-SS CS
  CLP_protease  99 gkRfalpnarimihqPlggaqgqasdieieaeellkikerlneilakhtgqslekiekdldrdtflsaeeAveyGLideviek 181
                   gkRf+lpn+r+mihqPlgg+qgqa+diei+a+e+lk+k r+ne++a+htgqsle+ie+d++rd+flsa+eAveyGL+d+++++
    CTQ26746.1 123 GKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAAEAVEYGLVDSILTH 205
                   ********************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 1811.94
//
Query:       CTQ26747.1  [L=424]
Description: ATP-dependent Clp protease ATP-binding subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-48  165.0   0.0    2.6e-48  164.4   0.0    1.3  1  AAA_2            AAA domain (Cdc48 subfamily)
    4.5e-21   74.4   3.8    1.4e-20   72.9   3.8    1.9  1  zf-C4_ClpX       ClpX C4-type zinc finger
    3.4e-17   62.3   2.8    3.9e-17   62.1   0.7    2.2  2  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    1.2e-15   58.1   0.1    3.7e-15   56.5   0.0    1.9  1  AAA              ATPase family associated with various cellul
    2.5e-07   30.3   0.2    0.00014   21.3   0.5    3.1  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      1e-06   28.8   0.0    8.7e-06   25.8   0.1    2.5  2  AAA_5            AAA domain (dynein-related subfamily)
    1.6e-06   28.5   0.5      2e-05   24.9   0.2    2.8  2  AAA_22           AAA domain
    4.8e-06   26.4   0.1    1.6e-05   24.7   0.1    1.9  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    5.9e-06   25.5   0.0    9.7e-06   24.8   0.0    1.3  1  MCM              MCM P-loop domain
    0.00036   21.0   0.4     0.0012   19.2   0.0    2.1  2  AAA_16           AAA ATPase domain
    0.00073   19.1   0.0     0.0016   18.0   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
     0.0008   19.1   0.0       0.15   11.8   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
     0.0038   17.4   0.0     0.0098   16.0   0.0    1.6  1  Sigma54_activ_2  Sigma-54 interaction domain
     0.0039   16.4   0.0     0.0092   15.2   0.0    1.6  1  TIP49            TIP49 P-loop domain
     0.0049   16.9   0.0      0.011   15.7   0.0    1.6  1  AAA_14           AAA domain
      0.005   16.6   0.1     0.0083   15.9   0.1    1.3  1  AAA_24           AAA domain
     0.0055   17.3   0.0      0.016   15.7   0.0    1.8  1  AAA_18           AAA domain
     0.0068   15.5   0.0      0.014   14.5   0.0    1.5  1  T2SSE            Type II/IV secretion system protein
     0.0069   16.2   0.0      0.014   15.3   0.0    1.5  1  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0081   16.7   0.0      0.025   15.1   0.0    1.9  1  ABC_tran         ABC transporter
     0.0081   16.1   0.0       0.16   11.9   0.0    2.6  2  NACHT            NACHT domain
     0.0086   15.8   0.1      0.017   14.8   0.1    1.4  1  IstB_IS21        IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.012   14.9   0.2        2.2    7.6   0.0    2.5  2  ATPase           KaiC
      0.022   14.9   0.0      0.046   13.9   0.0    1.5  1  AAA_33           AAA domain
      0.043   13.8   0.1      0.097   12.7   0.1    1.6  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.059   13.1   0.1       0.14   11.9   0.1    1.6  1  AAA_29           P-loop containing region of AAA domain
      0.079   12.9   0.1       0.31   11.0   0.1    2.1  1  ResIII           Type III restriction enzyme, res subunit
      0.091   12.9   0.1       0.41   10.8   0.0    2.2  1  DUF1296          Protein of unknown function (DUF1296)
       0.12   11.3   0.0       0.19   10.6   0.0    1.3  1  AAA_PrkA         PrkA AAA domain
       0.12   12.6   0.0        0.3   11.3   0.0    1.7  1  AAA_28           AAA domain
       0.12   11.8   0.0       0.32   10.4   0.0    1.6  1  PhoH             PhoH-like protein
       0.13   12.1   1.3       0.54   10.0   1.3    2.4  1  DEAD             DEAD/DEAH box helicase
       0.13   12.7   0.0       0.36   11.3   0.0    1.8  1  RNA_helicase     RNA helicase
       0.16   11.3   0.0       0.35   10.2   0.0    1.5  1  AAA_8            P-loop containing dynein motor region D4
       0.16   12.3   2.3        3.7    7.9   0.2    3.1  2  AAA_19           AAA domain
       0.62   10.5   2.2        1.2    9.6   2.2    1.8  1  AAA_23           AAA domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.4   0.0   5.2e-51   2.6e-48       3     170 ..     112     310 ..     110     311 .. 0.97

  Alignments for each domain:
  == domain 1  score: 164.4 bits;  conditional E-value: 5.2e-51
                 ---EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----...---------HH CS
       AAA_2   3 iisilllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgyvgaeegGivllDEidKihpk...essgadvSreg 94 
                 +++ill+gptg+Gkt+la++la+ll+v    ++++ada++l+e    +e+ve+++++l+++ +++v+++++Giv++DEidKi++k   +s+++dvS+eg
  CTQ26747.1 112 KSNILLIGPTGSGKTLLAETLARLLDV----PFTMADATTLTEagyvGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKsdnPSITRDVSGEG 206
                 689***********************8....********************************************************99********** PP

                 HHHHHHHHHH--EE-.........----.--EE-TT-EEEEEE--TTHHHHTTTS-S..................TTTTSGGG--HHHHHHTT--HHHH CS
       AAA_2  95 VqrdLLqileggtlt.........dkqg.rkvdtknilfImtgafgsskisdesrsk..................eeeeekkkeeveeelkkglipEll 165
                 Vq++LL+++eg+++          ++q+  +vdt++ilfI++gaf++ ++  ++r +                  +e e  ++ e+e+++k+glipE++
  CTQ26747.1 207 VQQALLKLIEGTVAAvppqggrkhPQQEfLQVDTSKILFICGGAFAGLDKVISHRVEtgsgigfgatvkaksdkaSEGELLAQVEPEDLIKFGLIPEFI 305
                 ************************99999******************999998888899**************99999999****************** PP

                 TT--E CS
       AAA_2 166 gRlpe 170
                 gRlp+
  CTQ26747.1 306 GRLPV 310
                 ***97 PP

>> zf-C4_ClpX  ClpX C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   3.8   2.7e-23   1.4e-20       1      39 []      13      50 ..      13      50 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 2.7e-23
  zf-C4_ClpX  1 krCSFCgksesevkklIagpngvyICdeCvelcneiiee 39
                ++CSFCgks++ev+klIagp+ vyICdeCv+lcn+ii+e
  CTQ26747.1 13 LYCSFCGKSQHEVRKLIAGPS-VYICDECVDLCNDIIRE 50
                59******************7.***************86 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       8.1     4e+03       4      21 ..     156     173 ..     155     184 .. 0.73
   2 !   62.1   0.7   7.9e-20   3.9e-17       1      75 [.     317     395 ..     317     399 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 8.1
                    HHHHHHHHHHHHHHHHHS CS
  ClpB_D2-small   4 eelkkIvdlalkklekrl 21 
                    e++++I+++ l+k    +
     CTQ26747.1 156 EDVENIIQKLLQKCDYDV 173
                    678889999888876555 PP

  == domain 2  score: 62.1 bits;  conditional E-value: 7.9e-20
                    SCHHHHHHHHHH...HHHHHHHHSCT.TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSST CS
  ClpB_D2-small   1 LtkeelkkIvdl...alkklekrlke.rgvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelke 75 
                    L++e+l +I+++   al k+++ l + +g ele+ dealda+a+k++ +++GAR+Lr+i++  ++d+++++++ +++++
     CTQ26747.1 317 LSEEALIQILKEpknALTKQYQALFSlEGAELEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEK 395
                    89**********************999********************************************99888764 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   7.5e-18   3.7e-15       1      98 [.     115     220 ..     115     257 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 7.5e-18
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTHHHHHH.HHHHHHH..HHTS...TSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsell.skyvgesekki.relfkea..keka...kpsilfiDEidalaksr...sgseseeeervvnqL 89 
                 +ll+Gp G GKTlla+ +a+ l+v+f   ++++l+   yvge  ++i ++l++++         +  i+ iDEid++ +++   s + + ++e v+++L
  CTQ26747.1 115 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTeAGYVGEDVENIiQKLLQKCdyD--VqkaQRGIVYIDEIDKISRKSdnpSITRDVSGEGVQQAL 211
                 69*********************************667***99887626677777541..244456*************99988778999999****** PP

                 HHHHHHTTT CS
         AAA  90 lteldgvkk 98 
                 l+ ++g   
  CTQ26747.1 212 LKLIEGTVA 220
                 ****99765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.5   2.8e-07   0.00014      20      55 ..     110     146 ..      75     168 .. 0.81
   2 ?    3.5   0.0     0.081        40     101     121 ..     172     192 ..     139     195 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.8e-07
  Mg_chelatase  20 aGgHnlllvGppGsGKtmlakrlpsll.pplseeeal 55 
                    G+ n+ll+Gp GsGKt+la+ l+ ll  p ++++a 
    CTQ26747.1 110 LGKSNILLIGPTGSGKTLLAETLARLLdVPFTMADAT 146
                   4899*********************993355665555 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.081
  Mg_chelatase 101 eislahnGvLfLDElpefkrk 121
                   ++ +a++G++++DE+ +++rk
    CTQ26747.1 172 DVQKAQRGIVYIDEIDKISRK 192
                   6899***********999986 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   1.8e-08   8.7e-06       1      79 [.     114     191 ..     114     195 .. 0.74
   2 ?   -2.0   0.0       6.8   3.4e+03      81     111 ..     207     236 ..     202     250 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.8e-08
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------..G-SEEEEESGGG--H CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik.ngttslvdsplvraar..egeilvlDEveraes 79 
                 ++lL+Gp+G+gK+ lae la++l  ++++   t  t++  +   +e   ++  +  d  +    +  +  i+++DE++++++
  CTQ26747.1 114 NILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIiQKLLQKCDYDV----QkaQRGIVYIDEIDKISR 191
                 689********************9999999999988877777777632233333333333....234556999999999985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 6.8
                 HHHHHHHHHHSSEEE..-SSSEEE---.... CS
       AAA_5  81 vlnsLlslleerrllleeggelvkaknddll 111
                 v+++Ll+l+e     +++ g++ + ++++ l
  CTQ26747.1 207 VQQALLKLIEGTVAAVPPQGGRKHPQQEF-L 236
                 78999999999999999999998887764.3 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.2   3.9e-08     2e-05       4     105 ..     111     190 ..     108     214 .. 0.82
   2 ?   -1.1   0.0       4.2   2.1e+03      61      70 ..     355     364 ..     308     418 .. 0.52

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 3.9e-08
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh 102
                 +++ ++++G++G+GKT+l+++l++ l         ++++   +++ +t+   + +++ ++++            ll+++   ++++++ +++ iDE+++
  CTQ26747.1 111 GKSNILLIGPTGSGKTLLAETLARLL---------DVPFTMADATTLTEAGYVGEDVENIIQ-----------KLLQKCDYDVQKAQR-GIVYIDEIDK 188
                 57889*********************.........888888888888887788888888877...........477788888888888.8888888888 PP

      AAA_22 103 lrs 105
                 + s
  CTQ26747.1 189 I-S 190
                 7.4 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 4.2
      AAA_22  61 lralglelka 70 
                 l a+  ++ a
  CTQ26747.1 355 LDAIAKKAMA 364
                 2222222222 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   3.3e-08   1.6e-05       5     100 ..      73     193 ..      70     197 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 3.3e-08
      RuvB_N   5 sleey.igqekvkeklkifieaakkreeald..........hvllyGpPGlGkttlakiiakelgvklkitsgPvlekag....dlaalltnl...... 82 
                 +l++y igqe+ k+ l++++    kr ++ d           +ll+Gp G Gkt la+ +a+ l+v + ++ + +l +ag    d+  ++++l      
  CTQ26747.1  73 HLDDYvIGQEQAKKVLAVAVYNHYKRLRNGDtsngvelgksNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGyvgeDVENIIQKLlqkcdy 171
                 6788846*************99888765544222333333369********************************999874445677777765322222 PP

      RuvB_N  83 ....eekdvlfideihrlsrav 100
                      ++ +++idei ++sr+ 
  CTQ26747.1 172 dvqkAQRGIVYIDEIDKISRKS 193
                 2221235689999999998875 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.9e-08   9.7e-06      17     137 ..      69     193 ..      50     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.9e-08
                 HHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSB...BCSS-EEEEEESSTSTHHHHHHHHHHHSSSEE.EEESSSSSSSHSSSEEEEESSSSSEE CS
         MCM  17 klvksiapsiyghedvkkaillqlfggvkkkledktk...lrgdinvllvgdpgtaKsqlLkyveklaprav.ytsgkgssaagLtaavvrdeetgefv 111
                 ++ + +   ++g+e+ kk +++++   +k+ ++ +t+     g+ n+ll+g  g +K+ l +++++l++    ++ +++ ++ag +   v +   +++ 
  CTQ26747.1  69 EIRHHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSngvELGKSNILLIGPTGSGKTLLAETLARLLDVPFtMADATTLTEAGYVGEDVEN-IIQKLL 166
                 56667778899**************99998766555445468****************9999999988776414456677899999998855.555566 PP

                 EEET.HHHHTTTSEEEEESGGGSTCHH CS
         MCM 112 leaG.alvladkGvcciDefdkmkeed 137
                  ++   +  a++G+++iDe+dk++++ 
  CTQ26747.1 167 QKCDyDVQKAQRGIVYIDEIDKISRKS 193
                 6666157789************99864 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.5e-06    0.0012      16      69 ..      96     182 ..      90     243 .. 0.60
   2 ?   -1.9   0.1       7.4   3.7e+03      81     115 ..     322     347 ..     285     383 .. 0.53

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.5e-06
      AAA_16  16 lervrsgrp........elvllsGesGvGKsslvrellralekd....................ggif.lrgkcdql....esaipy 69 
                 ++r+r g++        +++ll+G+ G+GK+ l+++l+r l                       ++i  l +kcd      +++i y
  CTQ26747.1  96 YKRLRNGDTsngvelgkSNILLIGPTGSGKTLLAETLARLLDVPftmadattlteagyvgedveNIIQkLLQKCDYDvqkaQRGIVY 182
                 5555555555556667799*******************8665555555555555555555544322224555555554444444444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 7.4
      AAA_16  81 llrqlldeaesaeleawrekleealaavpelagae 115
                 l++ l+++         + +l+++++a  +l+gae
  CTQ26747.1 322 LIQILKEP---------KNALTKQYQALFSLEGAE 347
                 33333333.........112222222222222222 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.1e-06    0.0016      33     110 ..     112     187 ..     106     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.1e-06
       AAA_7  33 kkpvllvGptGtGKtviikdllkkld.kekylsltinfsaqtsanqlqdiiesklekrrkgvygPpggkklvvFvDDln 110
                 k ++ll+GptG+GKt+++++l + ld + ++  +t    a    +++ +ii++ l+k     y  ++ ++ +v++D+++
  CTQ26747.1 112 KSNILLIGPTGSGKTLLAETLARLLDvPFTMADATTLTEAGYVGEDVENIIQKLLQKCD---YDVQKAQRGIVYIDEID 187
                 6799*********************9444444445555566677788888888887776...78888888999999886 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00029      0.15      20      44 ..     110     134 ..      91     155 .. 0.84
   2 ?    4.8   0.0     0.041        20      89     108 ..     173     192 ..     167     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00029
                      TSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat  20 ktdlsvlitGesGtGKellaraihe 44 
                        ++++l+ G +G+GK+lla+++ +
       CTQ26747.1 110 LGKSNILLIGPTGSGKTLLAETLAR 134
                      55789***************99865 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.041
                      HHHTTTSEEEEETGGGS-HH CS
  Sigma54_activat  89 fekadgGtlfLDeigelple 108
                      ++ka+ G++++Dei +++ +
       CTQ26747.1 173 VQKAQRGIVYIDEIDKISRK 192
                      799************99865 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     2e-05    0.0098      20      84 ..     111     192 ..     106     196 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2e-05
                      -SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.............HHHHHH.......TTTSEEEEEE-TT--HH CS
  Sigma54_activ_2  20 sklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.............ldlleq.......akggtLylkdiadlska 84 
                       k++++l+G+ Gsgk+l A++L+        +f++++  +l+             ++ll++       a+ g+ y+ +i+++s++
       CTQ26747.1 111 GKSNILLIGPTGSGKTLLAETLARLLDV---PFTMADATTLTeagyvgedveniiQKLLQKcdydvqkAQRGIVYIDEIDKISRK 192
                      5799***************999988766...66666666555566777777778877777777776668************9986 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.8e-05    0.0092      22      88 ..      74     148 ..      58     197 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-05
                 XXXXXXXXXXXXXXXXXXX....XXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  22 eeeglvGqkkareaagviv....elikekk......laGravLlaGpsgtGktalaiaiskelgedvpfvalsgsev 88 
                  ++ ++Gq++a++  +v v    + ++++       l+   +Ll Gp+g+Gkt la ++++ l   vpf++  ++ +
  CTQ26747.1  74 LDDYVIGQEQAKKVLAVAVynhyKRLRNGDtsngveLGKSNILLIGPTGSGKTLLAETLARLLD--VPFTMADATTL 148
                 56678888888887777653333334444311111144457********************996..****9988876 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.2e-05     0.011       5      77 ..     115     190 ..     112     219 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.2e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla..dpekllelilek.lke....ekktylflDEiqevp 77 
                 +++ G+  +GKT l+++l++ l      +   +  + +++ +   d e++++ +l+k         ++ ++++DEi +++
  CTQ26747.1 115 ILLIGPTGSGKTLLAETLARLLD---VPFTMADATTLTEAGYVgeDVENIIQKLLQKcD-YdvqkAQRGIVYIDEIDKIS 190
                 7899**************96666...333333333333333221133345555555532.1467789999******9984 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.7e-05    0.0083       3      82 ..     113     194 ..     111     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.7e-05
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfi.........dtekGlksldadkfpdieswedfldevvelaaeladyktlviDtideleelcl 82 
                  +il++Gp g+GKT la +l  + l +          te+G+   d+ ++     ++++l++++++  ++a+  ++ iD id++ +  +
  CTQ26747.1 113 SNILLIGPTGSGKTLLAETL-ARLLDVpftmadattLTEAGYVGEDVENI-----IQKLLQKCDYD-VQKAQRGIVYIDEIDKISRKSD 194
                 589*****************.66666655556666678888755555554.....59999999998.5556678999999999988665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.2e-05     0.016       1      25 [.     115     158 ..     115     206 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.2e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...................g 25 
                 Ill G+ G+GKt la+ L+++l +                   +
  CTQ26747.1 115 ILLIGPTGSGKTLLAETLARLLDVpftmadattlteagyvgedV 158
                 99******************997777666666666665553332 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.7e-05     0.014     124     153 ..     110     136 ..      57     149 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.7e-05
       T2SSE 124 kavrerglilvsGgTgsGKttllyallkei 153
                      + +il+ G+TgsGKt l+ +l   +
  CTQ26747.1 110 LG---KSNILLIGPTGSGKTLLAETLARLL 136
                 44...789*************999887665 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.8e-05     0.014       3      42 ..     116     156 ..     115     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.8e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarl.drdvegltdelsggggi 42 
                 +liGp gsGK+ L ++l  l ++ +++++ +t ++ g++g+
  CTQ26747.1 116 LLIGPTGSGKTLLAETLARLLDVpFTMADATTLTEAGYVGE 156
                 79********************9977777777777666655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     5e-05     0.025      13      37 ..     114     138 ..     103     222 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5e-05
                 EEEEEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkp 37 
                  + ++G++G+GK+ L+++la+ll+ 
  CTQ26747.1 114 NILLIGPTGSGKTLLAETLARLLDV 138
                 6789*****************9986 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00032      0.16       3      24 ..     115     136 ..     113     148 .. 0.90
   2 ?    1.1   0.0      0.64   3.2e+02      77     115 ..     173     217 ..     153     223 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00032
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                 ++l G+ GsGKT L++ la+++
  CTQ26747.1 115 ILLIGPTGSGKTLLAETLARLL 136
                 799***************9987 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.64
                 CCSCCCEEEEEE-STT-SS-TCH...............HHHHHCT CS
       NACHT  77 lelperlLlilDglDelvtdlgq......kekqpvrtlLselirk 115
                 ++ ++r    +D +D+++++ ++         + v++ L +li++
  CTQ26747.1 173 VQKAQRGIVYIDEIDKISRKSDNpsitrdVSGEGVQQALLKLIEG 217
                 6789999999*******9988888888875555566666677776 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   3.5e-05     0.017      47      68 ..     112     133 ..     107     136 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.5e-05
   IstB_IS21  47 kenivllGpsGvGKshlaialg 68 
                 k ni+l+Gp+G GK+ la +l+
  CTQ26747.1 112 KSNILLIGPTGSGKTLLAETLA 133
                 68*****************998 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0044       2.2      19      38 ..     112     131 ..      81     134 .. 0.91
   2 ?    4.9   0.1     0.028        14      86     142 ..     143     201 ..     136     209 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0044
      ATPase  19 grvvlitGepGtGKtifalq 38 
                 ++ +l+ G +G+GKt++a++
  CTQ26747.1 112 KSNILLIGPTGSGKTLLAET 131
                 5689*************986 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.028
      ATPase  86 idasesae.esaeekdkedleelieelaeaikeikakrvviDsitgl.ayeekeavaRe 142
                  da++ +e ++  e+ ++ +++l+++  + +++ +   v iD i+ +  ++++++ +R+
  CTQ26747.1 143 ADATTLTEaGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKIsRKSDNPSITRD 201
                 55555443144455788889999************************777777777775 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.3e-05     0.046       2      25 ..     115     140 ..     115     187 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.3e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..a 25 
                 +ll+G+ GsGK+ lae l++ l+  +
  CTQ26747.1 115 ILLIGPTGSGKTLLAETLARLLDvpF 140
                 689***************99887643 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00019     0.097      15      46 ..     111     139 ..      81     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00019
                 HHCHTEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  15 akalgdvilLeGdLGaGKTtlvrglakalgve 46 
                 +   ++ ilL G+ G+GKT l+  la+ l+v 
  CTQ26747.1 111 G---KSNILLIGPTGSGKTLLAETLARLLDVP 139
                 2...356********************99875 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00029      0.14      20      46 ..     111     136 ..      99     142 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00029
      AAA_29  20 dlkg.atlltGpsGsGKSTllDAiqalL 46 
                      ++ll+Gp+GsGK+ l   ++ lL
  CTQ26747.1 111 G--KsNILLIGPTGSGKTLLAETLARLL 136
                 3..2379**********98776666665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00062      0.31      22      48 ..     110     136 ..      79     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00062
                 .TTSEEEEEESTTSTHHHHHHHHHHHH CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierl 48 
                  ++ ++l+  +TG+GKTl+a  l++ l
  CTQ26747.1 110 LGKSNILLIGPTGSGKTLLAETLARLL 136
                 5667999***********997777665 PP

>> DUF1296  Protein of unknown function (DUF1296)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00083      0.41      19      57 ..     157     195 ..     151     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00083
     DUF1296  19 hsdeeIyamLkecnmDpneavqkLLsqDtfheVkskrdk 57 
                   ++ I + L+ c++D+ +a    ++ D + ++ +k d+
  CTQ26747.1 157 DVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDN 195
                 55667999****************************985 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00037      0.19      81     114 ..     105     138 ..      97     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00037
    AAA_PrkA  81 aqrleerkqilyllGPvggGksslverlkkllea 114
                 ++++e  k  ++l+GP g+Gk+ l+e+l +ll++
  CTQ26747.1 105 SNGVELGKSNILLIGPTGSGKTLLAETLARLLDV 138
                 677888899999******************9975 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0006       0.3       1      25 [.     114     139 ..     114     180 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0006
      AAA_28   1 kivitGgestGKTtlleaLaar.gyp 25 
                 +i ++G+ ++GKT l+e La+  ++p
  CTQ26747.1 114 NILLIGPTGSGKTLLAETLARLlDVP 139
                 589*****************765444 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00064      0.32      22      40 ..     115     133 ..     103     138 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00064
                 EEEE--TTSSTTHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavala 40 
                 +  iGp+G+GKt+la +la
  CTQ26747.1 115 ILLIGPTGSGKTLLAETLA 133
                 5689***********8876 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.3    0.0011      0.54      12      32 ..     110     130 ..     104     401 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0011
                 HTTCEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        DEAD  12 lgggdvlvaaeTGsGKTlafl 32 
                 lg+ ++l+ ++TGsGKTl + 
  CTQ26747.1 110 LGKSNILLIGPTGSGKTLLAE 130
                 56789************9865 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00072      0.36       1      25 [.     115     139 ..     115     203 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00072
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkk 25 
                   i+l Gp+g GK++la++La+ l   
    CTQ26747.1 115 ILLIGPTGSGKTLLAETLARLLDVP 139
                   6899*************99877644 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00069      0.35      24      78 ..     112     170 ..     108     190 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00069
       AAA_8  24 rghaLlvGvgGsGrqsltkLAafiaelelf....qievtkkykekefredlkkllkkag 78 
                 ++++Ll+G  GsG+  l++  a ++++ +     +  ++  y  ++ ++ ++kll+k+ 
  CTQ26747.1 112 KSNILLIGPTGSGKTLLAETLARLLDVPFTmadaTTLTEAGYVGEDVENIIQKLLQKCD 170
                 79***************998888887777622223334455666666666666666665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2    0.0073       3.7       7      33 ..     109     135 ..     104     149 .. 0.80
   2 ?   -0.4   0.1       2.7   1.4e+03       7      33 ..     238     264 ..     232     277 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0073
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhival 33 
                 +l ++++l++++ G+GKT + ++  +l
  CTQ26747.1 109 ELGKSNILLIGPTGSGKTLLAETLARL 135
                 677899************877766555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 2.7
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhival 33 
                   ++k+l++ +G+  G  +v+ h+v+ 
  CTQ26747.1 238 VDTSKILFICGGAFAGLDKVISHRVET 264
                 5578999****************9986 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.2    0.0024       1.2      15      43 ..     108     136 ..      94     361 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0024
      AAA_23  15 idFskgltlItGpNGaGKTTildAiklaL 43 
                 ++++k   l++Gp+G+GKT + + +   L
  CTQ26747.1 108 VELGKSNILLIGPTGSGKTLLAETLARLL 136
                 67888889***********9999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      799  (0.0445647); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 2928.41
//
Query:       CTQ26748.1  [L=784]
Description: DNA-binding ATP-dependent protease La [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-98  327.0   0.1    6.9e-98  326.2   0.1    1.4  1  Lon_C           Lon protease (S16) C-terminal proteolytic dom
    1.9e-42  145.5   0.2    1.9e-42  145.5   0.2    1.8  2  LON_substr_bdg  ATP-dependent protease La (LON) substrate-bin
    6.9e-18   65.3   0.0    1.6e-17   64.1   0.0    1.7  1  AAA             ATPase family associated with various cellula
    3.4e-10   40.1   0.0    1.3e-09   38.1   0.0    2.1  2  AAA_5           AAA domain (dynein-related subfamily)
    2.9e-07   30.3   0.0    6.9e-07   29.1   0.0    1.7  1  ChlI            Subunit ChlI of Mg-chelatase
      1e-05   24.7   0.0    1.9e-05   23.8   0.0    1.4  1  AAA_PrkA        PrkA AAA domain
    6.7e-05   23.3   0.0    0.00047   20.6   0.0    2.5  2  AAA_16          AAA ATPase domain
    0.00061   19.6   0.0     0.0017   18.1   0.0    1.7  1  IstB_IS21       IstB-like ATP binding protein
     0.0013   18.6   0.0     0.0039   17.1   0.0    1.8  1  AAA_3           ATPase family associated with various cellula
     0.0042   16.9   0.0      0.025   14.3   0.0    2.3  2  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
     0.0096   16.2   0.2        0.1   12.8   0.2    2.5  1  AAA_22          AAA domain
  ------ inclusion threshold ------
      0.011   15.9   0.0      0.046   13.8   0.0    2.1  1  AAA_2           AAA domain (Cdc48 subfamily)
      0.016   15.2   0.1       0.36   10.7   0.0    2.5  2  NACHT           NACHT domain
      0.016   15.7   0.1      0.016   15.7   0.1    2.6  2  AAA_18          AAA domain
      0.017   15.1   0.0      0.052   13.6   0.0    1.9  1  AAA_14          AAA domain
      0.049   13.8   0.6       0.13   12.4   0.1    1.9  2  AAA_33          AAA domain
       0.06   13.2   0.0       0.18   11.7   0.0    1.8  1  RsgA_GTPase     RsgA GTPase
      0.078   13.0   0.8       0.28   11.3   0.8    2.0  1  ClpB_D2-small   C-terminal, D2-small domain, of ClpB protein
       0.11   12.8   0.0       0.54   10.7   0.0    2.2  2  RNA_helicase    RNA helicase
       0.12   12.1   7.2       0.32   10.8   7.2    1.7  1  Phage_GP20      Phage minor structural protein GP20
       0.14   12.2   0.0        0.3   11.1   0.0    1.5  1  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
       0.18   11.3   1.9       0.46    9.9   1.9    1.7  1  ECH_2           Enoyl-CoA hydratase/isomerase
        0.3   11.6   4.7       0.67   10.4   4.7    1.7  1  T3SSipB         Type III cell invasion protein SipB


Domain annotation for each model (and alignments):
>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.2   0.1  8.8e-101   6.9e-98       2     204 ..     570     772 ..     569     773 .. 0.99

  Alignments for each domain:
  == domain 1  score: 326.2 bits;  conditional E-value: 8.8e-101
                 E-TTTTHHHH-S-SS--SSSSS--BSSEEEEEEEETTEEEEEEEEEEEESS-S-EEEEES--HHHHHHHHHHHHHHTSS-GGGSS-SS-TTT-EEEEEE CS
       Lon_C   2 vtakeleellGkkrfrseeaekedqvGvvtGlawtevGGdlltieavllpgkgklkltGklgdvmkesaqaalsyvrsraeelgidkevfekkdihihv 100
                 ++ ++l+++lG++rf++++a++e++vG+vtGlawtevGGdlltie++ +pgkgkl+ tG+lg+vm+es+qaal++vrsra++lgi+++++ek+dih+hv
  CTQ26748.1 570 INGENLHDYLGVQRFDYGRADSENRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTVVRSRADKLGINADFYEKRDIHVHV 668
                 7889*********************************************************************************************** PP

                 -S-B-GGGGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGGGTTTS-HHHHTS-B--EESBHHHHH CS
       Lon_C 101 PeGavPkdGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenekdlediPeevreeleiilveevdevl 199
                 PeGa+PkdGPsaG++++talvs ltg++vr+dvamtGeitLrG+vlpiGGlkekllaa+r+gik+v++P+en++dle+iP++v  +l+i++v++++evl
  CTQ26748.1 669 PEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPDENKRDLEEIPDNVIADLDIHPVKRIEEVL 767
                 *************************************************************************************************** PP

                 HHHB- CS
       Lon_C 200 kaalv 204
                   al+
  CTQ26748.1 768 TLALQ 772
                 **996 PP

>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.5   0.2   2.4e-45   1.9e-42       1     207 [.      10     201 ..      10     202 .. 0.93
   2 ?   -2.0   0.2       3.4   2.7e+03      96     167 ..     218     239 ..     206     322 .. 0.57

  Alignments for each domain:
  == domain 1  score: 145.5 bits;  conditional E-value: 2.4e-45
  LON_substr_bdg   1 elpllpldnkvlfPgitlpltvsrpksiaaierlldkdkpyigvflvkesqkdaide.esiselysvGtvarIvqilrlddgrikvvlegleRvk 94 
                     e+p+lpl+++v++P++++pl v+r+ksi+++e+++d dk+   + lv  +qk+a+++ ++ ++l+ vGtva I q+l+l+dg++kv++egl+R++
      CTQ26748.1  10 EIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKK---IMLV--AQKEASTDePGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRAR 99 
                     79**************************************...****..********************************************** PP

  LON_substr_bdg  95 ikklekekeegylvaeveiieddsepedsdslq.kelkalvqeiiekikkslarellkllleielllkyedlenpyrLadlvaailpfsneekqe 188
                     i  l   ++   + a+ e++    +++  d+++ ++l ++  + +e +      +l+k++ + e l++++++++p+rLad +aa++p++  +kq+
      CTQ26748.1 100 ISAL--SDNGEHFSAKAEYL----DSPAIDEREqEVLVRTAISQFEGYI-----KLNKKI-PPEVLTSLNSIDDPARLADTIAAHMPLKLADKQS 182
                     *999..44777779******....5555555544899999999999998.....677777.9********************************* PP

  LON_substr_bdg 189 lLeeldvedRlkkvlelLk 207
                     +Le  dv +Rl+ ++ +++
      CTQ26748.1 183 VLEMSDVNERLEYLMAMME 201
                     **************99997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.4
  LON_substr_bdg  96 kkl.ekekeegylvaeveiieddsepedsdslqkelkalvqeiiekikkslarellkllleielllkyedlen 167
                     kk  ek +                                                    e++l+++++++++
      CTQ26748.1 218 KKQmEKSQR---------------------------------------------------EYYLNEQMKAIQK 239
                     333333333...................................................3333333333322 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   2.1e-20   1.6e-17       1     128 [.     352     489 ..     352     493 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 2.1e-20
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk.........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLl 90 
                 ++l+GppG+GKT+l +++ak +g++++++ +  ++++         y+g ++ k+ + ++++  k+    +++DEid++ ++        + + +++Ll
  CTQ26748.1 352 LCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEaeirghrrtYIGSMPGKLIQKMAKVGVKN--PLFLLDEIDKMSSDM-------RGDPASALL 441
                 58*********************************889*******************999999988..9**********6666.......99******* PP

                 HHHHHTTTS............SSTEEEEEEESSGGGSTHHHHSTTSSEEE CS
         AAA  91 teldgvkkk............eskvivigatnrpdkldpallrgRfdrki 128
                 ++ld +++              s+v++++++n++ +++ +ll +R++++ 
  CTQ26748.1 442 EVLDPEQNVafndhylevdydLSDVMFVATSNSM-NIPAPLL-DRMEVIR 489
                 *********************899*********8.7889999.9999875 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       8.2   6.4e+03      75      91 ..     146     162 ..     122     169 .. 0.69
   2 !   38.1   0.0   1.7e-12   1.3e-09       2     137 ..     352     484 ..     351     485 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8.2
                 GG--HHHHHHHHHHHHS CS
       AAA_5  75 eraesevlnsLlsllee 91 
                 +++++evl sL+s+ + 
  CTQ26748.1 146 KKIPPEVLTSLNSIDDP 162
                 57889999999987555 PP

  == domain 2  score: 38.1 bits;  conditional E-value: 1.7e-12
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG--HHH....HHHHHHHHHSS CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEveraesev....lnsLlslleer 92 
                 ++LvGppG+gK++l +++a+a++r+++ ++l     e++++g+r++        +++l +++     +  +++lDE+++++s++    +++Ll +l+ +
  CTQ26748.1 352 LCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRT---YIGSMPGKLIQKMAkvgvKNPLFLLDEIDKMSSDMrgdpASALLEVLDPE 447
                 79*******************************************7...5666788888888888889999**********988444467999999976 PP

                 E.EE..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHTT CS
       AAA_5  93 r.llleeggelvkaknddllerfrviatanpldrslnelspalrsR 137
                 + + +++   +v+ +  d    ++++at+n+ +     + ++l++R
  CTQ26748.1 448 QnVAFNDHYLEVDYDLSD----VMFVATSNSMN-----IPAPLLDR 484
                 514555555555555554....*******9988.....56666666 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   8.9e-10   6.9e-07       2     121 .]     614     740 ..     613     740 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 8.9e-10
        ChlI   2 evdvskglpkftivGlpdtavkeskervrsalkn.......sgfefpakkitvnLaPadlkkeGsafDLpiAigilaaleqieaeeetlflGeLsldGs 93 
                 e+ +  g+ k+t +G + + ++es +   + +++       +   ++++ i v +     +k+G++  +++  ++++ l  +++++++ + Ge+ l G+
  CTQ26748.1 614 ETACVPGKGKLTYTGSLGEVMQESIQAALTVVRSradklgiNADFYEKRDIHVHVPEGATPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQ 712
                 5556666667777777766666666666666655555555333345678899***9999**************************************** PP

        ChlI  94 lrpvkgvlpialaakkegikkvivpken 121
                 + p+ g+ + +laa++ gik+v++p en
  CTQ26748.1 713 VLPIGGLKEKLLAAHRGGIKTVLIPDEN 740
                 *************************998 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.4e-08   1.9e-05      51     111 ..     312     372 ..     288     385 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.4e-08
    AAA_PrkA  51 etikkypafeedffGleetiekiveyfraaaqrleerkqilyllGPvggGksslverlkkl 111
                 + ++  ++++ d +Gle + ++i+ey+   ++  + +  il l+GP g Gk+sl +++ k+
  CTQ26748.1 312 DLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372
                 45566778999*******************************************9999776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       8.1   6.3e+03       2      17 ..      30      45 ..      30      53 .. 0.78
   2 !   20.6   0.0     6e-07   0.00047       4      60 ..     326     385 ..     324     449 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 8.1
      AAA_16  2 lvGReeeleqLlsale 17
                +vGRe+ ++ L++a++
  CTQ26748.1 30 FVGREKSIRCLEAAMD 45
                89******88888776 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 6e-07
      AAA_16   4 GReeeleqLlsale...rvrsgrpelvllsGesGvGKsslvrellralekdggiflrgkc 60 
                 G e+  +++l++l    rv++  ++++ l+G++GvGK+sl +++++a  ++++  + g  
  CTQ26748.1 326 GLERVKDRILEYLAvqsRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGV 385
                 666666677777765557777777*********************998888766644443 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.1e-06    0.0017      13     134 ..     313     444 ..     305     449 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.1e-06
   IstB_IS21  13 lpaqktledidfraarsldkrkvkeLatlsfiekken..ivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrd......gklaral 103
                 l++ + + d d+   + ++ r+++ La  s ++k ++  ++l+Gp+GvGK+ l  ++++++ r+ +++    v+d   e++ +rr       gkl +++
  CTQ26748.1 313 LRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGpiLCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEA-EIRGHRRTyigsmpGKLIQKM 410
                 66556666777777778999999***99999998775338899***************9999988888777776643.344444322211114444433 PP

   IstB_IS21 104 kr.llkvdllilDdlgllpld..qaeaellfevi 134
                 ++  +k  l +lD++     d   + a+ l+ev+
  CTQ26748.1 411 AKvGVKNPLFLLDEIDKMSSDmrGDPASALLEVL 444
                 3313455677777776544331145566666666 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     5e-06    0.0039       4     113 ..     354     475 ..     351     481 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5e-06
       AAA_3   4 legvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeeke....kefefkkGpvfanllladeinrappktq....salleame.erqvtv 93 
                 l g PG++kt l +++aka + ++ r+ +      ++i G++     +       ++ k  v + l+l dei++ ++ ++    salle+++ e++v++
  CTQ26748.1 354 LVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSmpgkLIQKMAKVGVKNPLFLLDEIDKMSSDMRgdpaSALLEVLDpEQNVAF 452
                 6789***************************999******8654433324323345677788999*********98876433449*****986899999 PP

       AAA_3  94 egethklp...epflvlatqnPi 113
                 +++  +++   +  + +at n +
  CTQ26748.1 453 NDHYLEVDydlSDVMFVATSNSM 475
                 99887776222345677888876 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.2e-05     0.025       8      60 ..     323     376 ..     318     392 .. 0.69
   2 ?   -2.0   0.0       3.3   2.6e+03     135     154 ..     467     486 ..     403     489 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.2e-05
      RuvB_N   8 eyigqekvkeklkifieaakkreeal.dh.vllyGpPGlGkttlakiiakelgvk 60 
                 ++ g e+vk+++  +++  ++r +++    + l+GpPG+Gkt+l + iak  g k
  CTQ26748.1 323 DHYGLERVKDRILEYLAV-QSRVNKIkGPiLCLVGPPGVGKTSLGQSIAKATGRK 376
                 566777777776555543.344333303314589***************988765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.3
      RuvB_N 135 lvgattragllssPlrdrfg 154
                 +  at+ +  + +Pl dr+ 
  CTQ26748.1 467 MFVATSNSMNIPAPLLDRME 486
                 23466666777777777765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   0.00013       0.1       6      55 ..     350     390 ..     346     452 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskd 55 
                  il+++G++G+GKT l + +++           ++++v++ l +  + ++
  CTQ26748.1 350 PILCLVGPPGVGKTSLGQSIAKAT---------GRKYVRMALGGVRDEAE 390
                 689**************9999987.........66666655555555555 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.9e-05     0.046       8     129 ..     354     474 ..     350     513 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.9e-05
                 EE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT..-HHHHTTS....EEEEETGGG-------------HHHHHHHH CS
       AAA_2   8 llgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappg..yvgaeegG....ivllDEidKihpkessgadvSregVqrdLL 100
                 l+gp gvGkt l +++a+    +k  +++    ++ +e   ++      ig+ pg  +++ ++ G      llDEidK ++      d  r +   +LL
  CTQ26748.1 354 LVGPPGVGKTSLGQSIAKATG-RKYVRMALGGVRDEAE---IRGHRRTYIGSMPGklIQKMAKVGvknpLFLLDEIDKMSS------D-MRGDPASALL 441
                 789*****************9.6666666666666655...77777777777777223555666688889***********......3.35577899** PP

                 HHHH...--EE-----.--EE-TT-EEEEEE-- CS
       AAA_2 101 qile...ggtltdkqg.rkvdtknilfImtgaf 129
                  +l+   +   +d++     d ++++f++t++ 
  CTQ26748.1 442 EVLDpeqNVAFNDHYLeVDYDLSDVMFVATSNS 474
                 ***9522233447775578889999****9996 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00046      0.36       3      26 ..     352     375 ..     350     381 .. 0.87
   2 ?    1.5   0.0      0.33   2.6e+02      84     109 ..     419     441 ..     394     451 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00046
                 EEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   3 vilqGeaGsGKTtLlqklalawae 26 
                 ++l G++G+GKT L q++a a  +
  CTQ26748.1 352 LCLVGPPGVGKTSLGQSIAKATGR 375
                 799***************998765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.33
                 EEEEE-STT-SS-TCH.........H CS
       NACHT  84 LlilDglDelvtdlgqkekqpvrtlL 109
                 L++lD +D++++d++     p+  lL
  CTQ26748.1 419 LFLLDEIDKMSSDMRG---DPASALL 441
                 7***********9887...4444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       7.3   5.7e+03     102     127 ..     249     274 ..     246     277 .. 0.86
   2 ?   15.7   0.1   2.1e-05     0.016       2      32 ..     353     381 ..     352     413 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7.3
      AAA_18 102 speelleRlekRgyeeakikeneeae 127
                 +++e l+R  +  +++++ ke+ eae
  CTQ26748.1 249 DENEALKRKIDAAKMPKEAKEKTEAE 274
                 45899999999999999999999998 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 2.1e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgfgvnlrdva 32 
                 +l G+pGvGKt+l++ ++k +  g+++  +a
  CTQ26748.1 353 CLVGPPGVGKTSLGQSIAKAT--GRKYVRMA 381
                 799****************99..66665555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.6e-05     0.052       2      76 ..     349     428 ..     348     490 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.6e-05
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla.dpe.....kllelileklke..ekktylflDEiqev 76 
                 ++il+++G+  vGKT l + ++k      ++++ ++l   rd+++    +     +++  + +k+ +   k+ +++lDEi ++
  CTQ26748.1 349 GPILCLVGPPGVGKTSLGQSIAKATG---RKYVRMALGGVRDEAEIrGHRrtyigSMPGKLIQKMAKvgVKNPLFLLDEIDKM 428
                 5799**************99999988...99*****99888844321121334554444444432224568899******988 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       5.9   4.6e+03     103     124 ..     201     222 ..     177     238 .. 0.57
   2 ?   12.4   0.1   0.00016      0.13       2      28 ..     352     380 ..     351     400 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.9
      AAA_33 103 vvetdeetlkeRlakRaangdd 124
                   e d  + ++R++ R +++ +
  CTQ26748.1 201 ESEIDLLQVEKRIRNRVKKQME 222
                 4444444555555555554322 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00016
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avll 28 
                 + lvG+pG+GK+ l ++++k++g  +v+ 
  CTQ26748.1 352 LCLVGPPGVGKTSLGQSIAKATGrkYVRM 380
                 568******************99998875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00022      0.18      74     122 ..     324     372 ..     306     397 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00022
                  HTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  74 algyevllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpe 122
                  ++g+e ++ +  +  ++++  +++k+ + +lvG+ GvGK++L  +++  
   CTQ26748.1 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372
                  45555555555555666777789999****************9988775 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.8   0.00036      0.28       7      75 ..     499     567 ..     494     571 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00036
                    HHHHHH.HHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSST CS
  ClpB_D2-small   7 kkIvdl.alkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelke 75 
                     +I++   l k+ +r + ++ el+v+d+a+  +++  y +e G R+L+r i +   +++ +++l++ lk 
     CTQ26748.1 499 LNIAKRhLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQLLLDKSLKH 567
                    567777456688888888999************98.59**************************999874 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00069      0.54       1      26 [.     352     377 ..     352     436 .. 0.83
   2 ?   -2.2   0.0       7.2   5.6e+03       7      38 ..     619     647 ..     618     706 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00069
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   ++l+Gp+g+GK++l +++aka  +k+
    CTQ26748.1 352 LCLVGPPGVGKTSLGQSIAKATGRKY 377
                   589***************99988766 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 7.2
  RNA_helicase   7 sgeGKStlakeLakallkklklkkkdsvysrn 38 
                   +g GK t++ +L + ++++++      +++r+
    CTQ26748.1 619 PGKGKLTYTGSLGEVMQESIQA---ALTVVRS 647
                   6889999999988888877722...2222233 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   7.2   0.00041      0.32      26      81 ..     226     280 ..     198     287 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00041
  Phage_GP20  26 erdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadlkl 81 
                  +  l+eq+k+ +k+L ++ ++  +ne+L+++i+  +   k+ak++ ea++++lk+
  CTQ26748.1 226 REYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMP-KEAKEKTEAELQKLKM 280
                 234589***************************998765.5668888999999986 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00039       0.3      12      46 ..     342     376 ..     327     380 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00039
                 HHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  12 kklakalgdvilLeGdLGaGKTtlvrglakalgve 46 
                 +++ k  g +++L G+ G+GKT l +++aka g +
  CTQ26748.1 342 SRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK 376
                 3444433678********************99876 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.9   0.00059      0.46     181     268 ..     193     290 ..     169     334 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00059
                 HHHHHTT...........--------......----SHHHHHHHHHHHT.-S.-TTTHHHHHH.......T..--SHHHHHHHHHHHHS-HHHHHHHH CS
       ECH_2 181 eeaLaelessd...eeaveevleelaeeaeeeeeeselaekreaidrlfsad.sveeiveaLek......aeaeedewakktletlkkrsPtslkvtl 268
                  e L ++ +s+    +  +++ ++++++ e++++e  l+e+++ai++  ++  +  +  eaL++        +e++e  ++ l++lk +sP+s+++t+
  CTQ26748.1 193 LEYLMAMMESEidlLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEMdDAPDENEALKRkidaakMPKEAKEKTEAELQKLKMMSPMSAEATV 290
                 33344433333453444455555566666665668899999999999885544677777778766655654456778899999**********99886 PP

>> T3SSipB  Type III cell invasion protein SipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.7   0.00085      0.67      19     100 ..     205     288 ..     158     322 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00085
                 CHHHHHHHHH..HHHHHHHHTTTT.T----STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------- CS
     T3SSipB  19 SLsqLenrla..awkamskaqqea.asklSdelqtalseakgatddleaaiekadqaksaadaatkkvdeaqkrlkeLaPdePek 100
                  L q e+r+   + k+m k+q+e  + +  +++q+ l+e+++a d+ ea   k+d ak   ++a++k ++ +++lk ++P + e 
  CTQ26748.1 205 DLLQVEKRIRnrVKKQMEKSQREYyLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKM-PKEAKEKTEAELQKLKMMSPMSAEA 288
                 45555555532255677777766423345577777777777777777777777777664.4677777777777888887766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1388  (0.0774165); expected 358.6 (0.02)
Passed bias filter:                      701  (0.0390987); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 5077.19
//
Query:       CTQ26749.1  [L=90]
Description: DNA-binding protein HU-beta [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-33  113.1   0.0    5.6e-33  113.0   0.0    1.0  1  Bac_DNA_binding  Bacterial DNA-binding protein
    3.1e-07   30.5   0.0    3.3e-07   30.4   0.0    1.0  1  HU-HIG           HU domain fused to wHTH, Ig, or Glycine-rich
     0.0082   16.0   0.0      0.011   15.6   0.0    1.2  1  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
  ------ inclusion threshold ------
      0.018   15.1   0.0      0.027   14.6   0.0    1.2  1  HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
        0.1   12.8   0.0       0.11   12.7   0.0    1.1  1  HU-CCDC81_euk_1  CCDC81 eukaryotic HU domain 1


Domain annotation for each model (and alignments):
>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.0   1.6e-36   5.6e-33       1      90 []       1      90 []       1      90 [] 0.99

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 1.6e-36
                     EEHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEEEEE--BS-B-TTT--B--B--EEEEEEEE-HHHHHHH. CS
  Bac_DNA_binding  1 mtkkeLieeiaektgltkkdakrvveafldtikeaLkkgekvelsgFGtfkvkerkartgrnpkTgekvkiparkvvkFkpskelkeavn 90
                     m+k++Li++ia+ ++++k+ a r+++a++ +++e+L++g++v l gFGtf vker+artgrnp+Tg++++i+a kv+ F+++k+lk+avn
       CTQ26749.1  1 MNKSQLIDKIAAGADISKAAAGRALDALIASVTESLQAGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPGFRAGKALKDAVN 90
                     9***************************************************************************************98 PP

>> HU-HIG  HU domain fused to wHTH, Ig, or Glycine-rich motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   9.3e-11   3.3e-07      33     118 ..       2      89 ..       1      90 [] 0.92

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 9.3e-11
      HU-HIG  33 dfeeLceeiskrstlsrgdvkavldaledelkeaLadGerVeLgelGyFslslks.kgvedekevransikkkki.nfrpgkklkkel 118
                 + ++L+++i+    +s++    +ldal+  ++e+L+ G  V L ++G+F ++ ++ ++  ++++ +  +i  +k+  fr+gk+lk+++
  CTQ26749.1   2 NKSQLIDKIAAGADISKAAAGRALDALIASVTESLQAGDDVALVGFGTFAVKERAaRTGRNPQTGKEITIAAAKVpGFRAGKALKDAV 89 
                 5689**************************************************97777779999999999999955******99876 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     3e-06     0.011       3      51 ..       6      54 ..       4      57 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3e-06
  HU-CCDC81_bac_2  3 LansiaeaegisyeeAlqkiekeveelkqeLeeegrveleniGeLslne 51
                     L++ ia+  +is   A ++++  ++++ + L+ +  v l + G++ ++e
       CTQ26749.1  6 LIDKIAAGADISKAAAGRALDALIASVTESLQAGDDVALVGFGTFAVKE 54
                     8999*****************************************9886 PP

>> HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   7.4e-06     0.027       9      60 ..       9      58 ..       7      60 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.4e-06
  HU-CCDC81_euk_2  9 elaaaaglsrdvVescvqetfqalgdllrngknvelefkgiGvLsirnrkvk 60
                     ++aa a +s+  + +++++++  + + l+ g +v+l+  g+G++ ++ r+++
       CTQ26749.1  9 KIAAGADISKAAAGRALDALIASVTESLQAGDDVALV--GFGTFAVKERAAR 58
                     79**********************************9..69****9999875 PP

>> HU-CCDC81_euk_1  CCDC81 eukaryotic HU domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.1e-05      0.11      26      65 ..      23      62 ..      10      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.1e-05
  HU-CCDC81_euk_1 26 liWdalgeyieeqlekgkgvhipnfGtFtfeapdldlkad 65
                     ++ dal   + e l+ g  v++ +fGtF+++ +   ++ +
       CTQ26749.1 23 RALDALIASVTESLQAGDDVALVGFGTFAVKERAARTGRN 62
                     6789**************************9655544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 702.87
//
Query:       CTQ26750.1  [L=624]
Description: peptidyl-prolyl cis-trans isomerase (rotamase D) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-52  175.4  10.3    7.4e-52  175.4  10.3    2.8  3  SurA_N_3    SurA N-terminal domain
    2.5e-35  121.5   6.7    2.5e-35  121.5   6.7    3.4  4  SurA_N_2    SurA N-terminal domain
    2.1e-34  118.9  23.0    2.3e-24   86.5   0.6    5.3  5  Rotamase_2  PPIC-type PPIASE domain
    1.1e-16   61.5   5.6    1.7e-14   54.3   0.4    3.8  2  Rotamase_3  PPIC-type PPIASE domain
    4.6e-13   49.9   0.1    4.6e-13   49.9   0.1    4.3  4  Rotamase    PPIC-type PPIASE domain
    1.8e-08   34.5   4.4    7.2e-08   32.5   4.4    2.1  1  SurA_N      SurA N-terminal domain
  ------ inclusion threshold ------
          1    8.8   5.6       0.26   10.8   1.8    1.9  2  CFTR_R      Cystic fibrosis TM conductance regulator (CFTR), 
        6.6    7.5   8.5         27    5.5   0.1    3.7  3  DnaI_N      Primosomal protein DnaI N-terminus


Domain annotation for each model (and alignments):
>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.4  10.3   3.3e-55   7.4e-52       1     161 [.       1     165 [.       1     166 [. 0.98
   2 ?   -0.1   0.4      0.32   7.2e+02      89     129 ..     190     231 ..     179     238 .. 0.80
   3 ?   -3.0   0.0       2.4   5.4e+03      50      79 ..     248     277 ..     237     293 .. 0.61

  Alignments for each domain:
  == domain 1  score: 175.4 bits;  conditional E-value: 3.3e-55
    SurA_N_3   1 MleflrknakswiakillgliilaFvlwGvgsylsgsg.nsvakVngekIsraefqqayrrqleqlrqqlggnldaellde...lglrqqvldqlidea 95 
                 M+++lr++a+s+++ki++g+ii++F+l+Gv++yl g+g n +akVng++I r +f++a+  ++++++qqlg+++++ +++e   +++rqqvl++lide 
  CTQ26750.1   1 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLIGGGkNYAAKVNGQEIGRGQFENAVASERNRMQQQLGDQFSELAANEnymKTMRQQVLNRLIDES 99 
                 9*******************************999999788***************************************999999************* PP

    SurA_N_3  96 lllqeakklglsvsdeevakeiasipaFqedGkFdkerYkqlLaangltpeefeaslredlllqkl 161
                 ll+q+a++lgls+sde+v+++i +++aFq++GkFd++r+  ++a++g+t ++++++lr++l++q+l
  CTQ26750.1 100 LLDQYARELGLSISDEQVKQAIFQTQAFQTNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQL 165
                 *****************************************************************8 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.32
    SurA_N_3  89 dqlidealllqeakklglsvsdeevakeiasip.aFqedGkF 129
                 +++++ea ++  a   + ++sdee+++  ++++  F + ++F
  CTQ26750.1 190 QRVVREATINVNALAAKQTASDEEINAFWQQNQaRFMAPEQF 231
                 567889999999999999999999999996555367666666 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.4
    SurA_N_3  50 sraefqqayrrqleqlrqqlggnldaelld 79 
                 s +e+q+ y++ ++q+ q   ++++  + +
  CTQ26750.1 248 SDDEIQSWYDQHKDQFTQPQRNRYSVIQTK 277
                 455666666666666666555555544444 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   6.7   1.1e-38   2.5e-35       1     142 [.       2     139 ..       2     142 .. 0.97
   2 ?    4.7   4.9     0.011        25      51     131 ..     147     228 ..     139     241 .. 0.72
   3 ?   -1.5   0.1      0.89     2e+03     103     137 ..     240     272 ..     232     278 .. 0.69
   4 ?   -3.4   0.3       3.5   7.9e+03      55      78 ..     600     623 ..     583     624 .] 0.72

  Alignments for each domain:
  == domain 1  score: 121.5 bits;  conditional E-value: 1.1e-38
    SurA_N_2   1 LekiReksqgllvii.iglallaFilgdlfgvgsylfssssnevaeVnGekIslqefqqaveearqqlqqqlgenfdeseede...aqlreqvldqlvs 95 
                 ++++R+ +++++ +i +g+++++Fi   l+gv++yl ++++n++a+VnG++I + +f++av  +r+++qqqlg++f+e +++e   + +r+qvl++l++
  CTQ26750.1   2 MDNLRTAANSVVLKIiFGIIIVSFI---LTGVSGYLIGGGKNYAAKVNGQEIGRGQFENAVASERNRMQQQLGDQFSELAANEnymKTMRQQVLNRLID 97 
                 6899*********999*********...*************************************************99988888899*********** PP

    SurA_N_2  96 eklleqeaeklGltvsdeelqdaiqgnpaikqsFqpetGkFdkeklk 142
                 e ll+q a++lGl++sde++++ai +++a    Fq ++GkFd++++ 
  CTQ26750.1  98 ESLLDQYARELGLSISDEQVKQAIFQTQA----FQ-TNGKFDNQRFS 139
                 *****************************....**.********986 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.011
    SurA_N_2  51 Islqefqqaveearq...qlqqqlgenfdeseedeaqlreqv.ldqlvseklleqeaeklGltvsdeelqdaiqgnpaikqsFq.p 131
                  +++++ qa++++      +++  g +f    e+  ql   v  +++v+e+ ++ +a  ++ t+sdee++++ q+n+a   +F+ p
  CTQ26750.1 147 MTTDQYAQALRNQLTtqqLINAIAGTDFMLPGES-DQLAALVsQQRVVREATINVNALAAKQTASDEEINAFWQQNQA---RFMaP 228
                 5778888888887541113344478888776665.5555555156799***************************888...56644 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.89
    SurA_N_2 103 aeklGltvsdeelqdaiqgnpaikqsFq.petGkFd 137
                 a ++  ++sd+e+q+   ++     +F+ p+  +++
  CTQ26750.1 240 AASMQESASDDEIQSWYDQHKD---QFTqPQRNRYS 272
                 5556667788888888888444...48877776666 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 3.5
    SurA_N_2  55 efqqaveearqqlqqqlgenfdes 78 
                 +f++ ++++r+ ++ +lg+++d++
  CTQ26750.1 600 AFEALMSNLRKAAKIKLGDSIDQQ 623
                 467777777777777777777764 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3       0.9     2e+03      23      46 ..     106     129 ..      48     173 .. 0.64
   2 !   13.1   0.1   5.8e-05      0.13       2      39 ..     210     247 ..     209     248 .. 0.91
   3 !   86.5   0.6     1e-27   2.3e-24       2     121 .]     248     369 ..     247     369 .. 0.93
   4 !   22.7   0.9     6e-08   0.00013      42     120 ..     387     483 ..     371     484 .. 0.77
   5 !   11.0   0.3   0.00026      0.58      29     111 ..     485     578 ..     484     587 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.9
  Rotamase_2  23 ktlelavvkdqvaaeaalalakag 46 
                 + l l+  ++qv+++  + +a ++
  CTQ26750.1 106 RELGLSISDEQVKQAIFQTQAFQT 129
                 455556666666666666665555 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 5.8e-05
  Rotamase_2   2 teaevkayYeankdefskpegktlelavvkdqvaaeaa 39 
                 +++e+ a+ ++n+++f +pe++++++++ +++ ++e+a
  CTQ26750.1 210 SDEEINAFWQQNQARFMAPEQFRVSYIKMDAASMQESA 247
                 89*************************99988887765 PP

  == domain 3  score: 86.5 bits;  conditional E-value: 1e-27
  Rotamase_2   2 teaevkayYeankdefskpegktlelavvkdqvaaeaalalakagaekdfaalakgnskk......aadlgifesasnlpeelakaafalkpgevsgpv 94 
                 +++e++++Y+++kd+f++p++++++++++k++++a+a+la++++ga  dfa+lak++s++       +d+g+ e+as++p el k a   ++g++sg++
  CTQ26750.1 248 SDDEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGA--DFATLAKEKSTDiisarnGGDMGWMEDASTVP-EL-KDAGLKEKGQLSGVI 342
                 89*******************************************8..9********99966655556666******999.89.888888********* PP

  Rotamase_2  95 etdngyyivkvtevkpakvppfeevkd 121
                 +++ g+++ ++++v+pa+v+p+++v++
  CTQ26750.1 343 KSSVGFLVARLDDVQPAQVKPLADVRN 369
                 *************************95 PP

  == domain 4  score: 22.7 bits;  conditional E-value: 6e-08
  Rotamase_2  42 lakag......aekdfaalakgnskkaadlgifesasnlpe.....elakaaf.......alkpgevsgpvet.dngyyivkvtevkpakvppfeevk 120
                 l ++        ++++a++a+ ++ k+ ++g+f  ++ lpe     ++a+a+f       +  pg +s+++++ +++++++++ e k ++v+p++evk
  CTQ26750.1 387 LQQKVsdaasnDNESLASAAQVAGLKVVETGWFGRDN-LPEelnfkPVADAIFngglvgeNGAPGSNSDIITVdGDRAFVLRISEHKAEAVKPLAEVK 483
                 22222333333679999999999999*******9886.88889999******988888878899999**9*995556********************9 PP

  == domain 5  score: 11.0 bits;  conditional E-value: 0.00026
  Rotamase_2  29 vvkdqvaaeaalalakagaekdfaalakgnskkaadlg..ifesasnlpe....elakaafalkpgevsgpv.....etdngyyivkvtevkpa 111
                 +v d v+  +a+++ak +a+k +aal++g++++a ++    f + ++l+     +l + af+l+  + ++pv      ++++ ++v ++evk +
  CTQ26750.1 485 QVSDIVKHNKAEQQAKLEADKLLAALKDGKGDEAMKAAglSFGAPQTLSRtgqdPLSQLAFTLPLPQQGKPVygvgsNMQGDVVLVALDEVKAG 578
                 566778888999******************9995444444444445555556669********9999999998888777888999999999875 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.4   7.7e-18   1.7e-14      34     114 ..     276     355 ..     213     357 .. 0.91
   2 !    6.8   0.7    0.0042       9.4      15      51 ..     483     514 ..     468     526 .. 0.75

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 7.7e-18
  Rotamase_3  34 eeakakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvvktdfGyHiikvtd 114
                 ++++a a  +la+l++gadFa+lAke S D  s+ nGG++gw++ + +v+e +da ++ +kg++s+v+k+++G+ +++  d
  CTQ26750.1 276 TKTEADAKAVLAELQKGADFATLAKEKSTDIISARNGGDMGWMEDASTVPELKDAGLK-EKGQLSGVIKSSVGFLVARLDD 355
                 455667778*********************************************9886.68999**********9998776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0042
  Rotamase_3  15 svkvshIlistkgkesrseeeakakadsllaalkega 51 
                 +++vs I+ +     +++e++ak  ad+llaalk+g+
  CTQ26750.1 483 KAQVSDIVKH-----NKAEQQAKLEADKLLAALKDGK 514
                 5556666654.....5789***************886 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.8   4.1e+03      19      42 ..      56      80 ..      43     109 .. 0.69
   2 !   49.9   0.1   2.1e-16   4.6e-13      15      96 ..     275     354 ..     263     355 .. 0.90
   3 ?   -1.2   0.0       1.8     4e+03      11      40 ..     377     406 ..     363     434 .. 0.64
   4 ?    2.6   0.4      0.12   2.7e+02      10      38 ..     491     521 ..     472     538 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.8
                HHHHHHHHCCTCCCH.HHHHHHHCC CS
    Rotamase 19 kakaeeileqlksge.dtFeelArk 42
                ++ + + +++++++  d+F+elA +
  CTQ26750.1 56 ENAVASERNRMQQQLgDQFSELAAN 80
                4555555555555544667777754 PP

  == domain 2  score: 49.9 bits;  conditional E-value: 2.1e-16
                 HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-C.T-B-S-EEETTEEEEEEEE CS
    Rotamase  15 raeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkk.GeisepvetkfGfhiikle 96 
                 + +++a a+++l++l++g+d F++lA+++S+d  sa+ngGd+gw+e   ++pe+++a   lk+ G++s++++++ Gf + +l+
  CTQ26750.1 275 QTKTEADAKAVLAELQKGAD-FATLAKEKSTDIISARNGGDMGWMEDASTVPELKDAG--LKEkGQLSGVIKSSVGFLVARLD 354
                 5678999*************.***********************************85..5544*************988775 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.8
                 ----HHHHHHHHHHHHCCTCCCHHHHHHHH CS
    Rotamase  11 sekeraeakakaeeileqlksgedtFeelA 40 
                 +ek+ ++++a  +++ + +++++++++++A
  CTQ26750.1 377 QEKALDAYYALQQKVSDAASNDNESLASAA 406
                 244444444555555555555555444444 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.12
                 E----HHHHHHHHHHHHCCTCCCH..HHHHH CS
    Rotamase  10 asekeraeakakaeeileqlksge..dtFee 38 
                 + +k++++ak +a+++l+ lk g+  +++++
  CTQ26750.1 491 KHNKAEQQAKLEADKLLAALKDGKgdEAMKA 521
                 568899***************9996444444 PP

>> SurA_N  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   4.4   3.2e-11   7.2e-08      16     117 ..      61     165 ..      55     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.2e-11
      SurA_N  16 seldervkevkkqlakqgkqlPpeavLerqvlerlilekiqlqeaektgirvddeelnqaiaei.A.keN.kltldqlraalaedGlsydefreqiRkE 111
                 se +++ +++ +q+++  ++    +++++qvl+rli e++  q a++ g++++de+++qai +  A + N k + + ++  +a+ G++ d++ + +R+ 
  CTQ26750.1  61 SERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQAIFQTqAfQTNgKFDNQRFSGIVAQMGMTTDQYAQALRNQ 159
                 55566667777777777777778899**********************************95531324442678889********************** PP

      SurA_N 112 iiisrl 117
                 +++++l
  CTQ26750.1 160 LTTQQL 165
                 998875 PP

>> CFTR_R  Cystic fibrosis TM conductance regulator (CFTR), regulator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.8   0.00012      0.26      70     153 ..      79     163 ..      42     224 .. 0.71
   2 ?   -1.8   0.1      0.85   1.9e+03      51      76 ..     259     286 ..     228     309 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
                 -----------......----------------------------------------------------...------------- CS
      CFTR_R  70 aarkfsiiqkselqvngieeelselserrlslvpeseqveealprsnvlntgqtlqgrRRqsvLalmtnts.aqgqerreklqss 153
                 a+  +  + ++++  ++i+e+l +   r l l   +eqv +a+ +++ ++t+ +++ +R   ++a m  t+ + +q  r++l++ 
  CTQ26750.1  79 ANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQAIFQTQAFQTNGKFDNQRFSGIVAQMGMTTdQYAQALRNQLTTQ 163
                 555444445556777899************************************************9999867777777776654 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.85
                 ------..-------------------- CS
      CFTR_R  51 qadefe..ekRknsvilnplaaarkfsi 76 
                 ++d+f+  ++ + svi    +a+ k+ +
  CTQ26750.1 259 HKDQFTqpQRNRYSVIQTKTEADAKAVL 286
                 2233331134455666666666666554 PP

>> DnaI_N  Primosomal protein DnaI N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.9       0.4   9.1e+02       3      61 ..      69     128 ..      66     142 .. 0.71
   2 ?    5.5   0.1     0.012        27      25      44 ..     205     224 ..     183     239 .. 0.77
   3 ?    4.1   0.2     0.032        72      24      49 ..     242     267 ..     223     275 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.4
                 XTTXSXXXXSXXXHHHHHH.HHHHHHHTTXHHHHHHHHHSTTTC-HHHHHHTHHHHHHHH CS
      DnaI_N   3 sigeslkkllkkrkfekry.eklkeevlsdpeVqaFlqehqeelteeaierslskLyeyv 61 
                 ++g+++++l+ ++++ k + +++ ++++++    ++ +e   ++++e++++ + + + ++
  CTQ26750.1  69 QLGDQFSELAANENYMKTMrQQVLNRLIDESLLDQYARELGLSISDEQVKQAIFQTQAFQ 128
                 567788887777776655515667777788888888888888888888888777666655 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.012
                 HHHHTTXHHHHHHHHHSTTT CS
      DnaI_N  25 keevlsdpeVqaFlqehqee 44 
                  +++ sd+e++aF+q++q++
  CTQ26750.1 205 AKQTASDEEINAFWQQNQAR 224
                 47899************986 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.032
                 HHHHHTTXHHHHHHHHHSTTTC-HHH CS
      DnaI_N  24 lkeevlsdpeVqaFlqehqeelteea 49 
                  ++e  sd e+q+  ++h+++ t+ +
  CTQ26750.1 242 SMQESASDDEIQSWYDQHKDQFTQPQ 267
                 478999**************999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1388  (0.0774165); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 4428.81
//
Query:       CTQ26751.1  [L=122]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-20   71.0   0.0    9.9e-20   70.6   0.0    1.2  1  HHH_3     Helix-hairpin-helix motif
    5.7e-10   38.6   0.1    1.8e-05   24.4   0.0    2.5  2  HHH       Helix-hairpin-helix motif
     0.0001   21.8   0.0    0.00013   21.4   0.0    1.2  1  T2SSK     Type II secretion system (T2SS), protein K
    0.00028   21.1   0.0    0.00095   19.4   0.0    2.1  1  HHH_6     Helix-hairpin-helix motif
     0.0013   19.3   0.0       0.85   10.3   0.0    2.4  2  HHH_5     Helix-hairpin-helix domain
  ------ inclusion threshold ------
      0.081   12.9   0.0       0.41   10.7   0.0    1.9  2  HRDC      HRDC domain


Domain annotation for each model (and alignments):
>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   3.3e-23   9.9e-20       3      65 .]      58     121 ..      56     121 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 3.3e-23
       HHH_3   3 avgvdiNtAsaeeLqk.lpGlgpklAknIvayReknGpfksreeLlkvkglgpktfeqlagflr 65 
                 a +v iN Asae+L++ l+G+g k+A++Iv yRe++Gpfk++++L++v+g+g + +e++  +l+
  CTQ26751.1  58 ATKVSINRASAEQLAQaLNGVGLKKAQAIVSYREEYGPFKTLDDLKQVPGMGSALVERNLAHLT 121
                 579************98*****************************************998886 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     6e-09   1.8e-05       3      30 .]      61      89 ..      59      89 .. 0.94
   2 !   11.9   0.0   5.5e-05      0.16       7      23 ..      96     112 ..      90     115 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 6e-09
                HHHHTSSHHHHHT.STT-SHHHHHHHHHH CS
         HHH  3 eglipasreeLla.lPGVGpktAeaIlsy 30
                 +++ as e+L++ l GVG k+A+aI sy
  CTQ26751.1 61 VSINRASAEQLAQaLNGVGLKKAQAIVSY 89
                5799***********************98 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 5.5e-05
                 TSSHHHHHTSTT-SHHH CS
         HHH   7 pasreeLlalPGVGpkt 23 
                   ++++L+++PG G + 
  CTQ26751.1  96 FKTLDDLKQVPGMGSAL 112
                 689***********875 PP

>> T2SSK  Type II secretion system (T2SS), protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.5e-08   0.00013     182     231 ..      58     108 ..      49     121 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 4.5e-08
       T2SSK 182 ktkiNiNtasaevLaAlveglslsqaqrllaaRpea.gfrsvadflaasal 231
                 +tk+ iN asae La    g+ l++aq++++ R+e  +f++++d+++ + +
  CTQ26751.1  58 ATKVSINRASAEQLAQALNGVGLKKAQAIVSYREEYgPFKTLDDLKQVPGM 108
                 7999*****************************8877********998443 PP

>> HHH_6  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.2e-07   0.00095      31      62 ..      74     105 ..      34     121 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.2e-07
       HHH_6  31 aikglgeaaaerivaeRekegpfksledlarr 62 
                 a++g+g + a++iv+ Re+ gpfk+l+dl + 
  CTQ26751.1  74 ALNGVGLKKAQAIVSYREEYGPFKTLDDLKQV 105
                 789*************************9775 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00028      0.85      31      52 ..      65      87 ..      56      92 .. 0.83
   2 !    6.8   0.0    0.0035        10      35      50 ..     100     115 ..      96     120 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00028
                HS-HHHHHT.STTS-HHHHHHHH CS
       HHH_5 31 aadveeLak.ipGiGkktAerii 52
                +a++e+La+ + G+G k+A+ i+
  CTQ26751.1 65 RASAEQLAQaLNGVGLKKAQAIV 87
                57888888878999999999997 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0035
                 HHHHTSTTS-HHHHHH CS
       HHH_5  35 eeLakipGiGkktAer 50 
                 ++L ++pG+G  ++er
  CTQ26751.1 100 DDLKQVPGMGSALVER 115
                 7888888888888776 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.4   1.2e+03      40      58 ..      65      84 ..      61      87 .. 0.70
   2 ?   10.7   0.0   0.00014      0.41      41      62 ..      97     118 ..      95     121 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.4
                --SHHHHHTS.TTT-HHHHH CS
        HRDC 40 PttleeLlqi.egvgkrkle 58
                 +++e+L+q  +gvg +k++
  CTQ26751.1 65 RASAEQLAQAlNGVGLKKAQ 84
                56778887766888777765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00014
                 -SHHHHHTSTTT-HHHHHHHHH CS
        HRDC  41 ttleeLlqiegvgkrklekyge 62 
                 +tl++L+q++g+g++ +e++ +
  CTQ26751.1  97 KTLDDLKQVPGMGSALVERNLA 118
                 689***************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 915.93
//
Query:       CTQ26752.1  [L=133]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-15   56.1   0.1    4.8e-07   29.3   0.0    2.0  2  Acyl-ACP_TE      Acyl-ACP thioesterase
    5.5e-15   55.5   0.0    7.2e-15   55.1   0.0    1.2  1  4HBT             Thioesterase superfamily
    1.5e-14   54.5   0.0    1.8e-14   54.3   0.0    1.0  1  4HBT_2           Thioesterase-like superfamily
  ------ inclusion threshold ------
      0.084   13.0   0.0       0.17   12.0   0.0    1.5  2  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
       0.12   12.5   0.0       0.25   11.4   0.0    1.5  2  SdrG_C_C         C-terminus of bacterial fibrinogen-binding a


Domain annotation for each model (and alignments):
>> Acyl-ACP_TE  Acyl-ACP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   2.2e-09   7.8e-06     157     184 ..       3      30 ..       1      37 [. 0.92
   2 !   29.3   0.0   1.3e-10   4.8e-07      48     134 ..      43     130 ..      31     133 .] 0.91

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.2e-09
  Acyl-ACP_TE 157 kelkvrysDlDlnqHvNNvkYlewilev 184
                  +++kvr + lD++qHvNN++Yle+++e+
   CTQ26752.1   3 TQIKVRGYHLDVYQHVNNARYLEFLEEA 30 
                  789*********************9985 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 1.3e-10
  Acyl-ACP_TE  48 flkklnlvWvvakyeieierlpefgdkveietwaes.enklfcyrdfkvrdekgekiieaksvfvlmdqetrrlsrvtdeilaeyeee 134
                   + + n + vv +++i+  r+  +gd++++  ++e   +k ++  ++   + +ge++++a ++fv +d +t+++  ++ e++a+++++
   CTQ26752.1  43 WMMEKNIAFVVVNININYRRPAVLGDVLTVSSKLEQlNGKSGTLSQVVTLNPNGEVVADALITFVCIDLKTQKALPLEGELRAKLDQM 130
                  48899**************************998762579*******************************************99766 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0     2e-18   7.2e-15       2      77 ..      16      97 ..      15      99 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 2e-18
                SSB-HHHHHHHHHHHHHHHHHHTTST......TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCE CS
        4HBT  2 GvvhgGvylallDeaagaalrslggr......gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrl 77
                 +v++++yl++l+ea+++ l     +      +i++vvv+++i+++rp+ lgd+ltv  ++++l ++s ++++ v+  ++++
  CTQ26752.1 16 QHVNNARYLEFLEEARWDGLENSPAFqwmmekNIAFVVVNININYRRPAVLGDVLTVSSKLEQLNGKSGTLSQVVTLNPNGE 97
                79*******************999999**********************************************998877665 PP

>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   4.9e-18   1.8e-14       5     121 ..      11     125 ..       7     127 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 4.9e-18
      4HBT_2   5 dvDlnghlnnarylryleearvkflertglksrsiarrgiglilssahvryrrplkfpdrltvefrvididaktliiehrflsnadgkkaarveerivv 103
                  +D++ h+nnaryl++leear++ le      +++ ++ i+ ++ ++ + yrrp+ ++d ltv +++ + + k++ + + ++ n  g  +a ++ + v+
  CTQ26752.1  11 HLDVYQHVNNARYLEFLEEARWDGLENSPA-FQWMMEKNIAFVVVNININYRRPAVLGDVLTVSSKLEQLNGKSGTLSQVVTLNPNGEVVADALITFVC 108
                 579**********************96666.55666678********************************************999*99********** PP

      4HBT_2 104 mdygkrskkapvPpellk 121
                 +d +++ k  p+  el++
  CTQ26752.1 109 IDLKTQ-KALPLEGELRA 125
                 ***998.77777766665 PP

>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.5   5.2e+03      33      53 ..      23      41 ..       5      56 .. 0.57
   2 ?   12.0   0.0   4.8e-05      0.17      82     131 ..      58     101 ..      51     102 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.5
  MaoC_dehydrat_N 33 yldeeaaraagyrsliaPptf 53
                     yl+     +a++++l   p f
       CTQ26752.1 23 YLEFLE--EARWDGLENSPAF 41
                     444322..3456655555555 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.8e-05
  MaoC_dehydrat_N  82 feyhepiraGDelttesriadvydkkgvGalefivvettvtnqrGepvat 131
                      + y +p++ GD lt++s+++++  k   G+l  +v+     n +Ge+va+
       CTQ26752.1  58 INYRRPAVLGDVLTVSSKLEQLNGKS--GTLSQVVT----LNPNGEVVAD 101
                      689*********************96..88887776....4677777765 PP

>> SdrG_C_C  C-terminus of bacterial fibrinogen-binding adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.94   3.4e+03      63      87 ..      14      43 ..       2      61 .. 0.50
   2 ?   11.4   0.0     7e-05      0.25       6      47 ..      70     111 ..      68     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.94
                EEEESSGG...GS-TT----..T-CCCCEE CS
    SdrG_C_C 63 IYkvnkgq...dLpeSygvn..edsskled 87
                +Y++ +++   ++ e  + +  e+s  +++
  CTQ26752.1 14 VYQHVNNArylEFLEEARWDglENSPAFQW 43
                555555443443333333333444555555 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 7e-05
                 EEEEEEEEEEETTTTEEEEEEEECCTSS-EEEEEEEEEEECT CS
    SdrG_C_C   6 anisSriesfdkengtfeqtiYvnpskkslksaevvgnlsea 47 
                 +++sS+ e+++ ++gt +q++  np+++ +  a +++   ++
  CTQ26752.1  70 LTVSSKLEQLNGKSGTLSQVVTLNPNGEVVADALITFVCIDL 111
                 5799**************************999998866655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1083.59
//
Query:       CTQ26753.1  [L=233]
Description: queuosine biosynthesis protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-83  279.3   0.0    1.9e-83  279.1   0.0    1.0  1  QueC             Queuosine biosynthesis protein QueC
    1.1e-05   24.9   0.1    1.8e-05   24.2   0.1    1.3  1  Arginosuc_synth  Arginosuccinate synthase
     0.0036   17.0   0.0     0.0054   16.4   0.0    1.2  1  Asn_synthase     Asparagine synthase
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.019   14.7   0.1    1.3  1  ATP_bind_3       PP-loop family
      0.052   13.0   0.0       0.08   12.4   0.0    1.4  1  Diphthami_syn_2  Diphthamide synthase
      0.078   13.0   0.0       0.15   12.1   0.0    1.5  2  PAPS_reduct      Phosphoadenosine phosphosulfate reductase fa
       0.12   11.5   0.0       0.18   10.9   0.0    1.3  1  NAD_synthase     NAD synthase
       0.13   11.8   0.0       0.43   10.1   0.0    1.9  1  ThiI             Thiamine biosynthesis protein (ThiI)


Domain annotation for each model (and alignments):
>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.1   0.0   8.4e-87   1.9e-83       1     209 [.       3     213 ..       3     214 .. 0.98

  Alignments for each domain:
  == domain 1  score: 279.1 bits;  conditional E-value: 8.4e-87
                 EEEEE--SSHHHHHHHHHHHHH-SEEEEEEEESS-TTSHHHHHHHHHHHHT--.-EEEEE-GGGGGGSCGGG-----------...--------TTHHH CS
        QueC   1 kavvllSGGlDSttvlalakkegkevealtfdYgqrhkkeleaakkiakelgveehkildldllkelggsaLtdeeievpkeeleeeelpntfVpaRNl 99 
                 +avv++SGG+DStt+l++a+++++ev+++tfdYgqrh++e+++a+++a +lg ++hk+ld++ll+el+ s+Lt+++i vp+ + + e++pntfVp+RN+
  CTQ26753.1   3 RAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLGAVAHKVLDVTLLNELAVSSLTRDNIPVPDYQPDAEGIPNTFVPGRNI 101
                 69************************************************************************************************* PP

                 HHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHHHHHHHHHTS--EEE-TTTT--HHHHHHHHHHTT...HHHHH-B-STTS.-BTTTTSS CS
        QueC 100 iflslaasyaealgaeaiiiGvneedfsgYPDcrdefvkalnkalnlgedkkieieaPlidlsKaeivklgkelg...vpleetlsCYegeeegkaCge 195
                 +fl+l a+ya++++aeaii+Gv+e+dfsgYPDcrdefvkal++a++lg++k+i+ e+Pl++l+Kae+++l++  g   ++++etl+CY+g ++g++Cg+
  CTQ26753.1 102 LFLTLTAIYAYQVKAEAIITGVCETDFSGYPDCRDEFVKALHHAVSLGMAKDIRFETPLMWLNKAETWALADYWGqldLVRRETLTCYNG-IKGDGCGQ 199
                 ************************************************************************8888779***********.******** PP

                 SHHHHHHHHHHHHH CS
        QueC 196 CdaCalRkkgfeea 209
                 C aC+lR++g++++
  CTQ26753.1 200 CAACNLRANGLNQY 213
                 ***********987 PP

>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   8.2e-09   1.8e-05       1      59 [.       5      63 ..       5      74 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 8.2e-09
  Arginosuc_synth  1 vLaysGGlDtsviikllkeklgeeviavavdvGqe.eedldevkekalklgavksvvvDa 59
                     v+ +sGG D + ++    +++ +ev  v+ d Gq  + ++d ++e alklgav + v D+
       CTQ26753.1  5 VVVFSGGQDSTTCLVQALQQY-DEVHCVTFDYGQRhRAEIDVARELALKLGAVAHKVLDV 63
                     678*******99999999999.9***********7368*******************997 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.4e-06    0.0054      22      76 ..       6      59 ..       2      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.4e-06
  Asn_synthase 22 alLSGGlDSSliaalaarqsksplktFsigfeekgsdeakyakevaehlgtehte 76
                  +++SGG DS++    a +q + ++++++ ++ +++  e+++a+e+a +lg   ++
    CTQ26753.1  6 VVFSGGQDSTTCLVQALQQYD-EVHCVTFDYGQRHRAEIDVARELALKLGAVAHK 59
                  689*******98888888887.9********99****************998444 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   8.4e-06     0.019       2      46 ..       4      44 ..       3      75 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.4e-06
                EEEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSSTCHHHH CS
  ATP_bind_3  2 vlvAvSgGlDSmaLllllaklkkklgiklvaihvdhglreeskee 46
                ++v +SgG DS++ l+ + ++ +    ++ ++++d+g r++++ +
  CTQ26753.1  4 AVVVFSGGQDSTTCLVQALQQYD----EVHCVTFDYGQRHRAEID 44
                5899*******998888888877....799*******99877543 PP

>> Diphthami_syn_2  Diphthamide synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.6e-05      0.08       2      28 ..       3      29 ..       1      66 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.6e-05
  Diphthami_syn_2  2 kvavlysGGkDsilaLykalkeseves 28
                     +++v++sGG+Ds+  L +al++++  +
       CTQ26753.1  3 RAVVVFSGGQDSTTCLVQALQQYDEVH 29
                     57899****************965333 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.6e-05      0.15       2      52 ..       4      54 ..       3      88 .. 0.89
   2 ?   -3.5   0.0       4.1   9.1e+03      13      34 ..     145     166 ..     143     171 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.6e-05
                 EEEE--SSCTCHHHHHHHHHHCTTHEEEEEE-STB-HHHHHHHHHHHHHTT CS
  PAPS_reduct  2 lvvsvsgGkdslVllhLalkafkpvpvvfvdtghefpetiefvdeleeryg 52
                  vv +sgG ds+  l  al+  ++v+ v  d g+ ++  i+   el+ ++g
   CTQ26753.1  4 AVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLG 54
                 699***************************************999999884 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.1
                  HHHHHHHHHHCTTHEEEEEE-S CS
  PAPS_reduct  13 lVllhLalkafkpvpvvfvdtg 34 
                  +V l +a  +  + p+++++  
   CTQ26753.1 145 AVSLGMAKDIRFETPLMWLNKA 166
                  5788888888888888888765 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.1e-05      0.18      19      78 ..       2      59 ..       1      78 [. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.1e-05
                  SEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE--SSSTTHHHHHHHHHHHHHHTSEEEE CS
  NAD_synthase 19 kgvvlGlSGGvDSslvaalavkalgkenvlalllPssvsseedvedalalaenlgievkt 78
                  k +v+  SGG+DS++  +l + + + ++v+ + +   + ++ ++  a++la +lg   ++
    CTQ26753.1  2 KRAVVVFSGGQDSTT--CLVQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLGAVAHK 59
                  5679999******97..6777777889********999*************999976554 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00019      0.43       5      59 ..       3      56 ..       1     126 [. 0.71

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00019
        ThiI  5 kvlaLlSgGiDSpVaaylllkRGcrvvlvhlknepgtseeaiekveklaellaey 59
                +++++ SgG DS      +l+   +v++v+++ +     ++i++ ++la +l   
  CTQ26753.1  3 RAVVVFSGGQDSTTCLVQALQQYDEVHCVTFD-YGQRHRAEIDVARELALKLGAV 56
                68999**************************6.6666777788888888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1735.65
//
Query:       CTQ26754.1  [L=566]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-37  127.1   2.8    6.8e-37  126.2   2.8    1.5  1  SgrR_N     Sugar transport-related sRNA regulator N-term
    5.2e-15   55.3   0.0      1e-14   54.3   0.0    1.4  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f
     0.0032   17.3   0.2      0.055   13.4   0.1    2.7  3  MarR_2     MarR family
  ------ inclusion threshold ------
      0.013   15.6   0.0        3.3    7.9   0.0    2.4  2  HTH_AraC   Bacterial regulatory helix-turn-helix proteins, Ar
      0.015   15.4   0.2      0.037   14.1   0.2    1.7  1  HTH_28     Helix-turn-helix domain
      0.037   14.4   0.0        0.2   12.0   0.0    2.0  2  Rrf2       Transcriptional regulator


Domain annotation for each model (and alignments):
>> SgrR_N  Sugar transport-related sRNA regulator N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   2.8   2.3e-40   6.8e-37       2     114 ..       6     118 ..       5     119 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.2 bits;  conditional E-value: 2.3e-40
      SgrR_N   2 leeqyerLlqhfegkevevtLqelAdvlfCsrRhartlLkkmqeegwleWqpevGRgkrsrLtfllepeelqeqlaeklleqgkiekalalldkdkaal 100
                 +++qy+rL+q + g +++vt+ elA+++fCs+Rh+rtlL++ qe+gwl+Wq+++GRgkr++L f+++pe+l+++++e++l++g+ ++al+l++ ++ +l
  CTQ26754.1   6 RLNQYQRLWQPSAGAPQQVTVGELAERCFCSERHVRTLLRQAQEAGWLSWQASSGRGKRGQLSFHKTPESLRNEMMEQALNNGQQQNALELAQLAPVEL 104
                 579************************************************************************************************ PP

      SgrR_N 101 akllksklgvsfqe 114
                 + ll++ lg ++q+
  CTQ26754.1 105 KALLHPFLGGQWQN 118
                 ************97 PP

>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   3.4e-18     1e-14       3     161 ..     166     303 ..     165     308 .. 0.86

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 3.4e-18
                 EESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTTTTTHCHHHHHHHG CS
   SBP_bac_5   3 vpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnalfltllaavpasia 101
                 +++LA   w+vs+Dg+ + f++R  + +++G+ +        +  ll+ +   +   ++    +i ++ ++  + +++tl +p+  +++ la + + +a
  CTQ26754.1 166 IGDLAHH-WQVSPDGLRWHFYIRSTLCWHNGDTVETVQLRQRLLLLLELPALRTL--FA----SISRIDVTHAQCLTITLHRPDYWLPFRLASYCSVLA 257
                 679****.7***********************77665555544444444444443..33....789******************************999 PP

                 CCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-. CS
   SBP_bac_5 102 kkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvip 161
                              ++++ +g GP++lk+f+p + ++le +p Y   + p +  +e+++ p
  CTQ26754.1 258 ------------HPDDPAIGCGPFRLKRFSP-ELVRLENHPRYH-LQHPLIQAVEYWITP 303
                 ............588999*************.***********8.9**********9985 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.8e-05     0.055      19      56 ..      21      58 ..       2      65 .. 0.82
   2 ?    0.4   0.0      0.21   6.2e+02      20      35 ..     161     177 ..     145     180 .. 0.81
   3 ?   -3.0   0.0       2.4   7.1e+03      33      43 ..     353     363 ..     352     379 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-05
                TSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 19 grdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                ++ +tvgela+r+  s   v  +l+ +++aG++  +++
  CTQ26754.1 21 PQQVTVGELAERCFCSERHVRTLLRQAQEAGWLSWQAS 58
                3469****************************976655 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.21
                 S.EEEHHHHHHHHTSSH CS
      MarR_2  20 r.dltvgelarrlglsk 35 
                 + ++ +g+la ++++s+
  CTQ26754.1 161 GdNMPIGDLAHHWQVSP 177
                 346899*********98 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.4
                 SSHHHHHHHHH CS
      MarR_2  33 lsksavsrilk 43 
                 lsk+ ++r++ 
  CTQ26754.1 353 LSKAQAQRLVS 363
                 56666666664 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0011       3.3       7      32 ..      22      47 ..      20      49 .. 0.91
   2 ?    5.1   0.0    0.0085        25       7      22 ..     162     177 ..     159     180 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0011
                CT--HHHHHHHTTSSHHHHHHHHHHH CS
    HTH_AraC  7 tnltiediAdelgfSrsyFsrlFkke 32
                +  t++++A+ + +S+++ ++l++++
  CTQ26754.1 22 QQVTVGELAERCFCSERHVRTLLRQA 47
                5689******************9996 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0085
                 CT--HHHHHHHTTSSH CS
    HTH_AraC   7 tnltiediAdelgfSr 22 
                 +n+ i+d+A+++ +S+
  CTQ26754.1 162 DNMPIGDLAHHWQVSP 177
                 799**********998 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   1.3e-05     0.037      11      51 ..      22      62 ..      15      63 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.3e-05
      HTH_28 11 aGhsvreaArelgisrrtvyrWikryeegGiagLvprrrrp 51
                ++++v e+A++  +s+r+v+ ++++ +e G+ +    ++r+
  CTQ26754.1 22 QQVTVGELAERCFCSERHVRTLLRQAQEAGWLSWQASSGRG 62
                688***************************96655556665 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.7e-05       0.2      24      73 ..      22      75 ..      15      78 .. 0.86
   2 ?   -1.4   0.0       1.1   3.2e+03      13      43 ..     151     181 ..     144     184 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.7e-05
                C-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE....EETTT-TCEEESSHCCC CS
        Rrf2 24 epvsseeiaerqnispsylekilakLrkaglvk....svrGkgGGyrLakppee 73
                ++v++ e+aer   s+++++ +l++ ++ag++     s rGk+G ++  k pe+
  CTQ26754.1 22 QQVTVGELAERCFCSERHVRTLLRQAQEAGWLSwqasSGRGKRGQLSFHKTPES 75
                349****************************95333388999999999999986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
                 HHHHHHHSSTCC-B-HHHHHHHHTS-HHHHH CS
        Rrf2  13 allyLakeeeeepvsseeiaerqnispsyle 43 
                 + + L++ +e+  + + ++a++ ++sp  l+
  CTQ26754.1 151 IYAGLTRFDEGDNMPIGDLAHHWQVSPDGLR 181
                 55667788888889***********998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3963.97
//
Query:       CTQ26755.1  [L=272]
Description: thiamin pyrimidine pyrophosphate hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-54  182.8   0.0    1.1e-53  182.6   0.0    1.0  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
    5.7e-22   78.4   0.0    2.1e-12   47.1   0.0    2.1  2  S6PP             Sucrose-6F-phosphate phosphohydrolase
    3.7e-07   30.7   0.0    3.9e-06   27.3   0.0    2.0  1  Hydrolase        haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.02   14.0   0.0       0.52    9.4   0.0    2.2  2  Trehalose_PPase  Trehalose-phosphatase
      0.029   14.8   0.4        4.3    7.7   0.0    2.6  2  HAD              haloacid dehalogenase-like hydrolase
        0.1   12.8   0.0       0.18   12.0   0.0    1.5  1  Hydrolase_6      Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.6   0.0   3.6e-57   1.1e-53       2     255 .]       6     258 ..       5     258 .. 0.99

  Alignments for each domain:
  == domain 1  score: 182.6 bits;  conditional E-value: 3.6e-57
                  EEEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEEECTTTEEEEE--B-HHHHHHHHHHHHHTTCEEE CS
  Hydrolase_3   2 alDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGaliddekgkilykstiskedvkeiikllkennveil 99 
                  a+D+DGTLl  d+++ ekt +a+k+l+e++i++++ATGR++ ++++v+ e+ ld ++i+ NG+ i+  +g+ ly++++ +e+++ ++    + +v+++
   CTQ26755.1   6 AFDMDGTLLMPDHRLGEKTLSALKRLRERDITLTFATGRHVLEMHHVIGEFSLDAFLITGNGTRIHSLEGEELYRQDLAPEAAEAVLHGKWDTQVSMH 103
                  89************************************************************************************************ PP

                  EEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHHHHHHHHH CS
  Hydrolase_3 100 lytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelksklnklltitssskgyleimpkgvsKgtalkklak 197
                  ++++ ++++ ++    ++  +++ ++ + ++  + +    ++++ki+++ d+++l +l+ +l++ l++ +    s   +le++p g++Kg al  l +
   CTQ26755.1 104 VFNDGGWFTGQA---RPELLQAHVFSGFHYQLCDLKRMSAQHVTKICFCGDHDDLRRLRIQLNETLGDRAFLCFSAMDCLEVLPVGCNKGAALAVLSQ 198
                  ************...*********************************************************************************** PP

                  HCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSE..EE--GGGTHHHHHH CS
  Hydrolase_3 198 elnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdy..vtksnnedGVakal 255
                  +l+++l+e++afGD++ND eML  +g+g+ mgna +++k+   +  v++++ + +V+++l
   CTQ26755.1 199 HLGFTLQECMAFGDAMNDREMLGSVGRGFIMGNAMPQLKAELPHlpVIGDCRNQAVSHFL 258
                  ********************************************999*********9997 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.5e-10   4.6e-07       4     110 ..       4     114 ..       1     131 [. 0.76
   2 !   47.1   0.0   7.1e-16   2.1e-12     110     213 ..     136     236 ..     122     245 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.5e-10
                 EEEE-TBTTTB.S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHHHHHHHHT----SEEEETTTTEEEE....TT.EE-...HHHHHHHHTT--HHH CS
        S6PP   4 llvsdLDntlvdgdnealarlnelleaeerkdvllvfaTGRsldsakellkeknllkPdvlitsvGteiyy..geel.vpd...kaweeildekwdrqa 96 
                 l + d+D+tl+ +d++  ++  + l+  +++d++l faTGR++ ++ +++ e+ l    +lit  Gt i++  geel ++d   +a e++l+ kwd+q+
  CTQ26755.1   4 LAAFDMDGTLLMPDHRLGEKTLSALKRLRERDITLTFATGRHVLEMHHVIGEFSLD--AFLITGNGTRIHSleGEELyRQDlapEAAEAVLHGKWDTQV 100
                 6678*******7776666665566666999*************************7..59**********96644331333222456788999999999 PP

                 HHHHHHT-TTEEE- CS
        S6PP  97 vvealaklpeLtlQ 110
                  +++ ++   +t Q
  CTQ26755.1 101 SMHVFNDGGWFTGQ 114
                 88887776555555 PP

  == domain 2  score: 47.1 bits;  conditional E-value: 7.1e-16
                 --GGG-BTTBEEEEE-TTS-THHHHHHHHHHHTTTS-EEEEEETTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE-TT CS
        S6PP 110 QpeeeqrehKvSyfvdkekaaevlkeleqlLekreldvkviyssgkdlDvlPkraskgeAlryLakkleleleqilvcGdsgnDeellignvlgVvVgn 208
                   ++ q+  K+ +  d+++++++  +l+++L  r+    + +s+   l vlP + +kg+Al+ L+++l++ l++ +  Gd  nD+e+l +  +g ++gn
  CTQ26755.1 136 KRMSAQHVTKICFCGDHDDLRRLRIQLNETLGDRAF---LCFSAMDCLEVLPVGCNKGAALAVLSQHLGFTLQECMAFGDAMNDREMLGSVGRGFIMGN 231
                 567889999*************999*****998876...66********************************************************** PP

                 --HHH CS
        S6PP 209 aqeel 213
                 a ++l
  CTQ26755.1 232 AMPQL 236
                 *9983 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.3e-09   3.9e-06       2     209 ..       3     223 ..       2     224 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.3e-09
                 SEEEEESBTTTBCHHHHHHHHHHHH.....CHHHHHHHHHH....HHCHHHHHHHHHHHHHHHHHHHHHHETTTE............HHHHTHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsa.....alalaaaletg....sehpigkalvaaakarsgaltgfatfigrg............ayaigkpewlta 79 
                 k+ +fD+dGTL+   +++ + + sa     ++++   ++tg      h+    +   a  ++g+ t+++ ++g+             a++ gk +   +
  CTQ26755.1   3 KLAAFDMDGTLLMPDHRLGEKTLSAlkrlrERDITLTFATGrhvlEMHHVIGEFSLDAFLITGNGTRIHSLEGEElyrqdlapeaaeAVLHGKWDTQVS 101
                 7899********888888888888877767777777777778888555555556666667799999999999999999999999988999999888888 PP

                 HHCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHH.HH.HHH.TTGGGE.SEEEEHHCES..ST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxx.xxxxxx.xxxxxxxxxx..xx RF
   Hydrolase  80 ldippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetae.ra.anq.lGddyf.daviasdiet..va 172
                 +    ++ ++ g   +q+r + l+     +vf   +      +++ + a+     +  +  +gd+    + r+ +n+ lGd++f  ++   + e+  v+
  CTQ26755.1 102 M----HVFNDGGWFTGQARPELLQ----AHVFSGFHY--QLCDLKRMSAQ----HVTKICFCGDHDDLRRlRIqLNEtLGDRAFlCFSAMDCLEVlpVG 186
                 8....9999999999999999998....555655555..55555544444....2323444555544444333144457755555555555555555** PP

                 TTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 173 kpspegkvaaireLqgkpeevamVGDgvnDaaalaaA 209
                   +  ++  + + L+   +e++++GD +nD ++l  +
  CTQ26755.1 187 CNKGAALAVLSQHLGFTLQECMAFGDAMNDREMLGSV 223
                 *********************************9765 PP

>> Trehalose_PPase  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.022        65       2      79 ..       7      80 ..       6     105 .. 0.74
   2 ?    9.4   0.0   0.00017      0.52     153     198 ..     178     220 ..     154     253 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.022
                     EETBTTTB---SSGGG--B-TTHHHHHHHHHTTS-..EEEE-SS-HHHHHHHH---SS..EEEEGGGTEEE-TT--EEE- CS
  Trehalose_PPase  2 lDydGTlspivedpdaavpssellslLkkLasdpknvvaivSGrslkeeellvkvpel..glaaeHGaeirspsgedwen 79
                     +D dGTl          ++ +++ls+Lk+L ++ ++++ + +Gr + e     +   l   l+  +G  i s +ge+ + 
       CTQ26755.1  7 FDMDGTLLMPDH-----RLGEKTLSALKRLRER-DITLTFATGRHVLEMHHVIGEFSLdaFLITGNGTRIHSLEGEELYR 80
                     788888876655.....8899999******999.8899999999998855444443322256666888888888888777 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00017
                      SEEEEE-S---HHHHHHHHHHTS--------EEEEEE-SSTTHHHH CS
  Trehalose_PPase 153 kvvevrpqgvsKGkaverlleslgsadseddfvlciGDdrtDedmF 198
                      + +ev p+g +KG+a++ l ++lg++    +  ++ GD   D +m 
       CTQ26755.1 178 DCLEVLPVGCNKGAALAVLSQHLGFT---LQECMAFGDAMNDREML 220
                      679**********************9...77777999999999886 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.3     0.012        34       1      13 [.       5      17 ..       5      63 .. 0.69
   2 ?    7.7   0.0    0.0014       4.3     149     187 ..     187     220 ..     155     221 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.012
         HAD  1 alfDfDgTLldgd 13
                a fD+DgTLl  d
  CTQ26755.1  5 AAFDMDGTLLMPD 17
                68*******7553 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0014
         HAD 149 vrgegkvaalrewlaaegegidleevvayGDspsDlpll 187
                 +++ + +a+l      ++ g +l e++a+GD ++D ++l
  CTQ26755.1 187 CNKGAALAVLS-----QHLGFTLQECMAFGDAMNDREML 220
                 44434444444.....488899999***********998 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.9e-05      0.18       2      40 ..       6      45 ..       5      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.9e-05
                 EEESTTTSEE.TTEE-TTHHHHHHHHHHTT-EEEEEE--- CS
  Hydrolase_6  2 lfDidGvLwr.gdkaipgaaealnalraagkpvvllTNns 40
                 +fD+dG+L+  ++++ ++   al++lr++ +++ + T + 
   CTQ26755.1  6 AFDMDGTLLMpDHRLGEKTLSALKRLRERDITLTFATGRH 45
                 69*****9985777889*************9999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1945.14
//
Query:       CTQ26756.1  [L=350]
Description: Cysteine synthase B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-44  150.0   0.0    1.1e-43  149.8   0.0    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   0.0     6e-48   1.1e-43       7     293 ..      22     313 ..      18     314 .. 0.91

  Alignments for each domain:
  == domain 1  score: 149.8 bits;  conditional E-value: 6e-48
                 S--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHH.HHTT..TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT- CS
        PALP   7 pTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllar.lkeg..tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGa 102
                 +T l+rlp   +  g+ l+lK+Es++ptgS K R a +l+++ l +g  ++++ ++e+ssG ++++ A+ a+llGl+++ v+p+ + + k+++++ +G 
  CTQ26756.1  22 DTHLIRLPL-PAFPGIHLYLKDESTHPTGSLKHRLARSLFLYgLCNGwiKEGTPIIESSSGSTAVSEAYFARLLGLPFIAVMPSCTAKRKIEQIEFYGG 119
                 688888875.5689999**********************9999888899999*********************************************** PP

                 EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTT...SHHHHHHHHTHHHHHHHHTT....TTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECT CS
        PALP 103 evvevggdydeavaaaaelaaegegaylvsqfd...nptviegygtiglEileqlg....gkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepeg 194
                 ++++v ++  e  aa ++la+e  + ++ +qf      t + g + i+  i +q+     ++p ++v+++G+Gg+ a i++++++++ ++++++v+p+ 
  CTQ26756.1 120 RCHFV-QSAGEIYAASETLARE-LNGHYMDQFTfaeRATDWRGNNNIADSIFRQMShephPQPSWIVMSAGTGGTSATIGRYIRSQGYETQLMVVDPQ- 215
                 *****.668888888889****.**********9*9999*************999999999999*********************************9. PP

                 TCGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTC...EEEEE CS
        PALP 195 sdalarslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkeg...drvvv 290
                 ++ + +++++ + +  ++  + ++g++ +   +   + + + vde+  v+d++ ++++ +l +  g  v+ s+++++ ++ l+ a++++e+    ++v+
  CTQ26756.1 216 NSVFLDYWQTRDASLRSPVGSKIEGIGRP---RVEPSFIPDVVDEMLRVPDAASVATALWLETQLGRKVGASTGTNMWGV-LQLAARMREEgrtGSIVT 310
                 999999**99999999999**********...7777778888888999********************************.666666666533347777 PP

                 EE- CS
        PALP 291 ilt 293
                 +l+
  CTQ26756.1 311 LLC 313
                 776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2756.84
//
Query:       CTQ26757.1  [L=152]
Description: putative DNA-binding transcriptional regulator with homology to Lrp [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-21   74.0   0.0    9.7e-21   73.5   0.0    1.2  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    7.7e-17   60.6   0.4    1.4e-16   59.7   0.4    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
    1.5e-16   59.9   0.6    3.3e-16   58.8   0.6    1.6  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    0.00087   19.2   0.1     0.0014   18.5   0.1    1.3  1  HTH_11          HTH domain
     0.0035   17.3   0.1     0.0079   16.1   0.1    1.6  1  HTH_Crp_2       Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.018   13.7   0.0       0.02   13.5   0.0    1.1  1  Fiji_64_capsid  Fijivirus 64 kDa capsid protein
      0.063   12.9   0.0      0.087   12.4   0.0    1.2  1  DDRGK           DDRGK domain
      0.085   12.9   0.3       0.15   12.2   0.3    1.3  1  HTH_20          Helix-turn-helix domain
      0.098   12.6   0.1       0.17   11.8   0.1    1.4  1  MarR            MarR family
       0.12   12.1   0.0       0.22   11.2   0.0    1.4  1  DUF2783         Protein of unknown function (DUF2783)


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   5.4e-24   9.7e-21       1      75 []      68     142 ..      68     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 5.4e-24
                     EEEEE-GGG.TTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEEE CS
  AsnC_trans_reg   1 vlvslepgh.peqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivlet 75 
                     vl++++ +h ++++ +f  ++ ++ eV+ ++r++G+ydyll+v v+d++ +++f+++ ++s+pg+ ++++s+++e+
      CTQ26757.1  68 VLIKTQ-HHsSDWYCQFVSEVTQMAEVLGFWRMAGEYDYLLRVQVADMKRYDDFYKRLVNSVPGLSDVTSSFAMEQ 142
                     799***.556****************************************************************96 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.4   7.9e-20   1.4e-16       1      48 []       2      49 ..       2      49 .. 0.98

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 7.9e-20
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                ld++drk+L lLq++  +s + LA++++l+ +++++rlkrLe+eG+++
  CTQ26757.1  2 LDKIDRKLLALLQEDCTLSLQALADAVNLTTTPCWKRLKRLEDEGILR 49
                79*******************************************985 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.6   1.8e-19   3.3e-16       1      42 []       2      43 ..       2      43 .. 0.99

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 1.8e-19
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   LD+iDrk+L++Lqed+ +s ++LA++v+l+++++++R++rLe
     CTQ26757.1  2 LDKIDRKLLALLQEDCTLSLQALADAVNLTTTPCWKRLKRLE 43
                   8****************************************8 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   7.8e-07    0.0014       3      44 ..       7      47 ..       6      59 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 7.8e-07
      HTH_11  3 lqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                +++l lL +++ ++s + LA+  n++++  ++++k+Le+ g+
  CTQ26757.1  7 RKLLALL-QEDCTLSLQALADAVNLTTTPCWKRLKRLEDEGI 47
                5788888.99999**************************993 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   4.4e-06    0.0079      19      64 ..      16      59 ..       4      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.4e-06
                EEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEETEEEEES-HHH CS
   HTH_Crp_2 19 elpltqeelAsmlGltretvsrilseLkreglisrgrririldlea 64
                +  l+ + lA+ ++lt   + + l++L++eg+++ gr + +ld e+
  CTQ26757.1 16 DCTLSLQALADAVNLTTTPCWKRLKRLEDEGILR-GR-VALLDAEK 59
                367899***************************9.65.99999886 PP

>> Fiji_64_capsid  Fijivirus 64 kDa capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.1e-05      0.02     203     242 ..      86     125 ..      59     140 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
  Fiji_64_capsid 203 eevkyclilgklrlaggydyncpssttdvtrygdfdkfri 242
                     e  + + +lg  r+ag ydy      +d+ ry df k  +
      CTQ26757.1  86 EVTQMAEVLGFWRMAGEYDYLLRVQVADMKRYDDFYKRLV 125
                     44466789***************************98655 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.9e-05     0.087     102     145 ..       7      50 ..       2      57 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.9e-05
                 HHHHHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS-E CS
       DDRGK 102 eefinyikekKvvlleelavkfklktqevierikeLeeqgsltG 145
                 +++++ ++e     l+ la   +l+t+ + +r+k Le++g l G
  CTQ26757.1   7 RKLLALLQEDCTLSLQALADAVNLTTTPCWKRLKRLEDEGILRG 50 
                 56778888888999***************************998 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   8.2e-05      0.15       9      57 ..       3      51 ..       1      52 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.2e-05
                -HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20  9 hPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevv 57
                ++  r++l++L ++  l++ +la+++ l+ + + ++L+ Le+ g+++++
  CTQ26757.1  3 DKIDRKLLALLQEDCTLSLQALADAVNLTTTPCWKRLKRLEDEGILRGR 51
                5666999****99999******************************987 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   9.6e-05      0.17       8      48 ..       9      49 ..       7      51 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.6e-05
                HHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  8 iLrilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                +L++l e   ls++ La++++++++   + l+rLe++G ++
  CTQ26757.1  9 LLALLQEDCTLSLQALADAVNLTTTPCWKRLKRLEDEGILR 49
                788888889999**************************875 PP

>> DUF2783  Protein of unknown function (DUF2783)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00012      0.22       6      30 ..     113     137 ..     107     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
     DUF2783   6 nladpDdfYeaLieahrdlsdeqSa 30 
                  +++ DdfY++L+++  +lsd  S+
  CTQ26757.1 113 DMKRYDDFYKRLVNSVPGLSDVTSS 137
                 56788***************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1240.94
//
Query:       CTQ26758.1  [L=590]
Description: putative fused ATPase and permease component of metabolite transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-36  124.4   3.8    7.7e-36  124.1   3.8    1.1  1  ABC_membrane  ABC transporter transmembrane region
    1.4e-29  103.3   0.0    2.5e-29  102.6   0.0    1.4  1  ABC_tran      ABC transporter
    0.00071   19.5   0.0     0.0015   18.5   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
    0.00098   18.6   0.0      0.043   13.3   0.0    2.2  1  SMC_N         RecF/RecN/SMC N terminal domain
     0.0018   18.8   0.0     0.0033   18.0   0.0    1.3  1  AAA_23        AAA domain
     0.0029   18.2   0.1      0.076   13.6   0.0    2.7  3  AAA_18        AAA domain
     0.0063   16.8   0.3       0.03   14.6   0.3    2.1  1  AAA_22        AAA domain
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.042   13.6   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
      0.043   13.7   0.0      0.077   12.9   0.0    1.3  1  Rad17         Rad17 P-loop domain
      0.097   12.5   0.0       0.16   11.7   0.0    1.3  1  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
        1.2    8.2   4.1        2.6    7.2   4.1    1.4  1  Herpes_LMP1   Herpesvirus latent membrane protein 1 (LMP1)


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   3.8   4.7e-39   7.7e-36       4     274 .]      21     291 ..      18     291 .. 0.96

  Alignments for each domain:
  == domain 1  score: 124.1 bits;  conditional E-value: 4.7e-39
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHH CS
  ABC_membrane   4 iillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGel 100
                   +i l+++  vl+++ p v g ++d ++++  +   ++ +++ +l+l+++++ +l ++   ll  ++ +l ++lr ++++ + rq  +f+ ++++G+l
    CTQ26758.1  21 AIALLVIIAVLQLIPPKVVGIVVDGVTQQHYTAE-KVWMWIGALVLIAVMVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPAFYLRHRTGDL 116
                   688999999******************9766555.78889999999999999999999999999********************************* PP

                   HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH.HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT CS
  ABC_membrane 101 lsrltndvsklrdglgeklglffqslltfvgglivmfy.lgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkaf 196
                   ++r tndv+++  + ge +++++ sl++ +++livm + ++w+ltl+ l  +pl++l ++  +  l++ ++  q a + ++  ++Esl+ ir++kaf
    CTQ26758.1 117 IARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTqISWQLTLLALLPMPLMALAIKRNGDALHERFRVAQAAFSSLNDRTQESLTSIRMIKAF 213
                   ************************************999********************************************************** PP

                   TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 197 greeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfgal 274
                   g e++   +f     +   +++++a++++ + +++++++ ++++la+  G+++vi+g l++g+l+ f++++ ++++++
    CTQ26758.1 214 GLEDRQSAQFAADAADTGAKNMRVARIDARFDPTIYIAIGAANLLAIGGGSWMVIHGSLTLGQLTSFVMYLGLMIWPM 291
                   ****************************************************************************97 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.0   1.5e-32   2.5e-29       1     136 [.     352     500 ..     352     501 .. 0.89

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 1.5e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdeeiekalskl 92 
                 l++v+++l++g++++i G++GaGKSt+l+ll ++ + t Gei++ + +l   +l s+r++++v+ q+p+lf+++ v++n       + +++ie++++  
  CTQ26758.1 352 LEQVNFTLQPGQMLGICGPTGAGKSTILALLQRHFDVTHGEIRFHDLPLPILQLDSWRARLAVVNQTPFLFSDT-VANNialgkpdATQAQIERVAQLA 449
                 689*******************************************99999***********************.99999***9995555555555555 PP

                 TTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  93 glke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + ++         +t v++++  LSgGqkqr+++arall ++++l+lD++ 
  CTQ26758.1 450 SVHDdilrlpqGYETEVGERGVMLSGGQKQRISIARALLLEAEILILDDAL 500
                 544455555557799999999***************************986 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   9.1e-07    0.0015      85     131 ..     347     394 ..     334     398 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.1e-07
                  TTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  85 ktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                   +k +le+++  l+  ++  ++G++G+GKSt++  l+ + ++  ge++
   CTQ26758.1 347 ASKPSLEQVNFTLQPgQMLGICGPTGAGKSTILALLQRHFDVTHGEIR 394
                  45678999999999989**********************999999997 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.6e-05     0.043     135     211 ..     454     543 ..     349     550 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.6e-05
                 T.................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 x.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e.................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                 +                 +LSgG+k+ +++a  +       a + +lD+  +a D +  +++ + l++  +   +i+ ++r   l++a++++ +
  CTQ26758.1 454 DilrlpqgyetevgergvMLSGGQKQRISIARALL----LEAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVL 543
                 2444444444555566669*******998876543....457799*****************************************99988755 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     2e-06    0.0033      13      39 ..     355     382 ..     350     384 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2e-06
      AAA_23  13 qeidFsk.gltlItGpNGaGKTTildAi 39 
                 +++ + +  +  I+Gp+GaGK+Til  +
  CTQ26758.1 355 VNFTLQPgQMLGICGPTGAGKSTILALL 382
                 444445535889************9765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.4   8.8e+03      76      89 ..      40      53 ..      31      71 .. 0.75
   2 !   13.6   0.0   4.7e-05     0.076       2      24 ..     366     388 ..     365     417 .. 0.82
   3 ?    1.3   0.0      0.29   4.8e+02      58      91 ..     509     538 ..     480     548 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.4
      AAA_18 76 nlvidghlaelese 89
                 +v+dg+ ++++ +
  CTQ26758.1 40 GIVVDGVTQQHYTA 53
                589****9999854 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 4.7e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf 24 
                 +++G+ G+GK+t+   L+++  +
  CTQ26758.1 366 GICGPTGAGKSTILALLQRHFDV 388
                 59*****************9633 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.29
      AAA_18  58 dklldaleenssaleegknlvidghlaeleseaa 91 
                 +++l +l++    ++eg +++i+ h+   + ea 
  CTQ26758.1 509 HQILHNLRQ----WGEGRTVIISAHRLSALTEAS 538
                 344445555....689999999999988887765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   1.8e-05      0.03       6      31 ..     363     388 ..     359     529 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqlde 31 
                 ++l ++G++G+GK+t l+ l++ +d 
  CTQ26758.1 363 QMLGICGPTGAGKSTILALLQRHFDV 388
                 7888****************999864 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.5e-05     0.042      16      39 ..     356     379 ..     351     384 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-05
      AAA_29  16 tieidlkgatlltGpsGsGKSTll 39 
                  +++++ ++  + Gp+G+GKST+l
  CTQ26758.1 356 NFTLQPGQMLGICGPTGAGKSTIL 379
                 56666666888************9 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.7e-05     0.077      42      68 ..     359     385 ..     347     393 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.7e-05
       Rad17  42 srkkriLLisGPsGCgkstvvkvLske 68 
                  ++ ++L i+GP+G gkst++  L + 
  CTQ26758.1 359 LQPGQMLGICGPTGAGKSTILALLQRH 385
                 57889****************999876 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.8e-05      0.16       3      34 ..     366     397 ..     364     421 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.8e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltd 34 
                 ++ Gp g+GKS++L +l+  +++    ++ +d
  CTQ26758.1 366 GICGPTGAGKSTILALLQRHFDVTHGEIRFHD 397
                 699**************999887444444444 PP

>> Herpes_LMP1  Herpesvirus latent membrane protein 1 (LMP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.1    0.0016       2.6      70     133 ..       9      79 ..       3     117 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0016
                  XXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Herpes_LMP1  70 fifrrdllcplgalcllllmitllli.......alwnlhgqalylgivlfifgcllvlglwiyllellwrl 133
                  + frr+    lga++ll+++  l li        +  +  q      v + +g+l+++ + +yll  +wr+
   CTQ26758.1   9 WYFRREWRRYLGAIALLVIIAVLQLIppkvvgiVVDGVTQQHYTAEKVWMWIGALVLIAVMVYLLRYVWRV 79 
                  679*************999998888733222212233344444556788889******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 4298.34
//
Query:       CTQ26759.1  [L=592]
Description: putative fused ATPase and permease component of metabolite ABC transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-39  135.6   9.1    3.6e-39  135.1   9.1    1.2  1  ABC_membrane  ABC transporter transmembrane region
    2.5e-29  102.5   0.0    4.7e-29  101.6   0.0    1.5  1  ABC_tran      ABC transporter
    3.8e-08   33.1   0.1    4.5e-05   23.0   0.2    2.3  2  SMC_N         RecF/RecN/SMC N terminal domain
    0.00086   19.6   0.2     0.0039   17.5   0.2    2.0  1  AAA_22        AAA domain
    0.00095   19.6   1.6      0.003   18.0   1.6    1.8  1  AAA_16        AAA ATPase domain
     0.0083   15.9   0.6      0.023   14.4   0.1    2.0  2  AAA_29        P-loop containing region of AAA domain
  ------ inclusion threshold ------
       0.02   15.0   0.3       0.16   12.1   0.3    2.2  1  MMR_HSR1      50S ribosome-binding GTPase
      0.045   13.3   4.0       0.16   11.5   1.6    2.8  2  AAA_25        AAA domain
      0.051   13.5   0.0       0.13   12.1   0.0    1.6  1  RsgA_GTPase   RsgA GTPase
      0.057   13.2   0.4        4.4    7.0   0.0    2.6  2  IstB_IS21     IstB-like ATP binding protein
      0.057   13.5   0.2       0.14   12.2   0.1    1.6  2  DUF87         Helicase HerA, central domain
      0.095   12.5   1.1        1.9    8.2   1.1    2.3  1  DEAD          DEAD/DEAH box helicase
      0.098   13.1   0.0       0.16   12.4   0.0    1.3  1  AAA_23        AAA domain
       0.12   11.5   0.0       0.27   10.4   0.0    1.5  1  NB-ARC        NB-ARC domain
       0.16   12.4   0.3        1.9    8.9   0.2    2.5  1  AAA           ATPase family associated with various cellular 
       0.19   11.9   1.1       0.44   10.7   1.1    1.8  1  AAA_33        AAA domain
        9.8    6.2  10.2       0.23   11.5   1.1    2.8  3  YbhQ          Putative inner membrane protein YbhQ


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   9.1   3.4e-42   3.6e-39       3     271 ..      27     295 ..      25     298 .. 0.92

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 3.4e-42
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHH CS
  ABC_membrane   3 liillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGe 99 
                   +++ +  +a ++++  pl++++++d+++ k +     ++ +++++++l l+ ++l + qs l+n ++  ++ +lr++++++ l+qp+s fdt++vG+
    CTQ26759.1  27 IAVAMMWIAAAAEVSGPLLISYFIDNMVAKHTLPLKLVAGLAVAYIGLQLLAALLHYNQSLLFNRAAVGVVQQLRSDVMDAALHQPLSEFDTQPVGQ 123
                   566667789999****************987777789************************************************************ PP

                   HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHT CS
  ABC_membrane 100 llsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkaf 196
                   l+sr+tnd++ +rd++ + + ++++s +++ + l+ mf l w+++lv +ai+p +++v++++ + ++++ ++    +a+++  ++E+++g+ +++ f
    CTQ26759.1 124 LISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIAIFPAVLIVMIIYQRYSTPIVRRVRAWLADINDGFNEVINGMGVIQQF 220
                   ************************************************************************************************* PP

                   TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHH CS
  ABC_membrane 197 greeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailf 271
                   + +++f e+  +a+  ++ a ++ ++++g+l   + +l++ ++++ l++ + ++  g++ vg l +f+s++  l+
    CTQ26759.1 221 RQQARFGERMREASYAHYLARMQTLRLDGFLLRPLLSLFSSLVLCGLLMLFGFSAVGTIEVGVLYAFISYLGRLN 295
                   *****************************998666666666666655555555555**************97665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   4.5e-32   4.7e-29       1     137 []     357     505 ..     357     505 .. 0.94

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 4.5e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklg 93 
                 l++++l++   + va+vG++G+GKStL++l++g +  t Gei++dg++l + +++ lr+ i++++q+p +  ++  + n       s++++ +al+ ++
  CTQ26759.1 357 LQDITLDIPSRSFVALVGHTGSGKSTLASLMMGYYPLTHGEIRIDGRPLASLSHSALRRGIAMVQQDPVVLADT-FYANvalgrdISEAQVWEALEAVQ 454
                 789****************************************************************9999999.7777799*9988999999999999 PP

                 TGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 l            t +++++++LS Gqkq +alar+l+  p++l+lDE+ta
  CTQ26759.1 455 LAAvarsmsdGLYTQLGEQGNNLSVGQKQLLALARVLVDTPQVLILDEATA 505
                 88877877777888899999*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0     0.002       2.1      23      41 ..     366     384 ..     357     395 .. 0.84
   2 !   23.0   0.2   4.3e-08   4.5e-05     134     211 ..     474     547 ..     407     555 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.002
                 TSSEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnll 41 
                 s+sf a+vG+ GSGKs l 
  CTQ26759.1 366 SRSFVALVGHTGSGKSTLA 384
                 678*************885 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 4.3e-08
                 TTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 134 kelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                  ++LS G+k+L+ala ++    v+   + +lDe  a++D    +++ + l + ++++ ++vi++r  ++ +ad+++ +
  CTQ26759.1 474 GNNLSVGQKQLLALARVL----VDTPQVLILDEATANIDSGTEQAIQQALAKVRQHTTLVVIAHRLSTIVEADTILVL 547
                 349***********9885....56666789******************************************998765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   3.7e-06    0.0039       5     107 ..     367     513 ..     364     534 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.7e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee.......................erpevv.....fvtlpsstsskdl.lrellralglelkaerls 74 
                 +++++++G++G+GK+tl+  ++  ++      e                       ++++vv     + +++ + + ++    e l+a++l + a r  
  CTQ26759.1 367 RSFVALVGHTGSGKSTLASLMMGYYPLTHG--EiridgrplaslshsalrrgiamvQQDPVVladtfYANVALGRDISEAqVWEALEAVQLAAVA-RSM 462
                 789****************99999874333..256899******************777777688867777777766666678888999999999.555 PP

      AAA_22  75 seellealeqalrarav...............ielliiDEaqh.lr..see 107
                 s+ l+++l ++ ++ +v               +++li+DEa   ++  +e+
  CTQ26759.1 463 SDGLYTQLGEQGNNLSVgqkqllalarvlvdtPQVLILDEATAnIDsgTEQ 513
                 5555566666655555566666666667777999******98766543233 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.6   2.8e-06     0.003      24     170 .]     367     531 ..     348     531 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.8e-06
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggif.lrgkcdql......esaipy.....salaqalareellrqlldeaesaeleawrekleealaavpe 110
                  + v l+G+ G+GKs+l+   + ++  ++g   + g+   +      +++i++     ++la+++ +     +l+++   +e++ w +    +laav+ 
  CTQ26759.1 367 RSFVALVGHTGSGKSTLASLMMGYYPLTHGEIrIDGRPLASlshsalRRGIAMvqqdpVVLADTFYA---NVALGRD--ISEAQVWEALEAVQLAAVAR 460
                 3789******************877766333334444444443222233344444432223333322...2233333..44556666654454442222 PP

      AAA_16 111 lagaea...........srllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlrllesk.pllvv 170
                   +++            s    +l +l++ l   + p vl+lD++   +d+++ q++++ l+ + ++  l+v+
  CTQ26759.1 461 SMSDGLytqlgeqgnnlSVGQKQLLALARVLV--DTPQVLILDEATaNIDSGTEQAIQQALAKVRQHtTLVVI 531
                 22222244455555444444444444443333..3478*****999899999*99988777776665376665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       3.8     4e+03      43      58 ..      78      93 ..      77      95 .. 0.81
   2 !   14.4   0.1   2.2e-05     0.023      16      38 ..     361     383 ..     356     390 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.8
      AAA_29 43 qalLvpakkvrfNkaa 58
                +alL  ++++ fN aa
  CTQ26759.1 78 AALLHYNQSLLFNRAA 93
                57888888999**998 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.2e-05
      AAA_29  16 tieidlkgatlltGpsGsGKSTl 38 
                 t++i  ++++ l+G++GsGKSTl
  CTQ26759.1 361 TLDIPSRSFVALVGHTGSGKSTL 383
                 5667767799************9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   0.00015      0.16       2      22 ..     370     396 ..     369     562 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
                 EEEEESTTSSHHHHHHHHHT......S CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg......e 22 
                 va+vG++ +GKStL + ++g       
  CTQ26759.1 370 VALVGHTGSGKSTLASLMMGyyplthG 396
                 89*************999975555441 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.78   8.2e+02      87     136 ..     193     241 ..     189     247 .. 0.61
   2 ?   11.5   1.6   0.00015      0.16      30      54 ..     364     388 ..     341     533 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.78
      AAA_25  87 rrRlravgealrddarllvldlagv.eslpLfakdrggtl.ltadvdaleaa 136
                  rR+ra++++++d  ++ v++++gv ++ +  ++ r g++ ++a +++  a+
  CTQ26759.1 193 VRRVRAWLADINDGFNE-VINGMGViQQFR--QQARFGERmREASYAHYLAR 241
                 69********9765555.666778744433..33333333356666655555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00015
      AAA_25  30 lpagelallaGapgtGKttlaldla 54 
                 +p  ++++l+G++g+GK+tla+ ++
  CTQ26759.1 364 IPSRSFVALVGHTGSGKSTLASLMM 388
                 68999****************8776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012      0.13     100     131 ..     368     399 ..     347     404 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
                  SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevs 131
                  ++++lvG++G GKStL   +++   l  ge++
   CTQ26759.1 368 SFVALVGHTGSGKSTLASLMMGYYPLTHGEIR 399
                  7899*************999998888888776 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0042       4.4      47      65 ..     367     385 ..     351     398 .. 0.83
   2 ?    3.4   0.2     0.054        57      80     146 ..     467     531 ..     450     540 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0042
   IstB_IS21  47 kenivllGpsGvGKshlai 65 
                 +  ++l+G++G GKs la 
  CTQ26759.1 367 RSFVALVGHTGSGKSTLAS 385
                 56789************96 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.054
   IstB_IS21  80 fvrvedLveelkrarrdgklaralkrl.lkvdllilDdlgllpldqaeaellfeviekryerrsiiit 146
                 ++++ +  ++l++ +++  l   ++ l   +++lilD+  + ++d+  ++ + + ++k  +++++++ 
  CTQ26759.1 467 YTQLGEQGNNLSVGQKQ--LLALARVLvDTPQVLILDEA-TANIDSGTEQAIQQALAKVRQHTTLVVI 531
                 55555556666655444..333444440456******96.5778888889999999998888887765 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00013      0.14      26      44 ..     370     388 ..     357     389 .. 0.85
   2 ?   -3.6   0.0       9.1   9.6e+03     113     129 ..     503     519 ..     466     553 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
       DUF87  26 lAilgsTGsGKSntvavLl 44 
                 +A +g TGsGKS+++++++
  CTQ26759.1 370 VALVGHTGSGKSTLASLMM 388
                 799************9985 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 9.1
       DUF87 113 aaavqrsvleealdqak 129
                 a+a+ +s  e+a++qa 
  CTQ26759.1 503 ATANIDSGTEQAIQQAL 519
                 33334444444444443 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.1    0.0018       1.9      17     154 ..     370     527 ..     357     539 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0018
                 EEEEESTTSSHHHHHHHHHHHHHHHS...............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  17 vlvaaeTGsGKTlaflipvlqivyet...............kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 v + ++TGsGK++ +++ +    +++                  ++  a++      La   + n+    +  + +v   ++ v+     + ++ g+  
  CTQ26759.1 370 VALVGHTGSGKSTLASLMMGYYPLTHgeiridgrplaslshSALRRGIAMVQQDPVVLADTFYANVALGRDISEAQVWEALEAVQLAAVARSMSDGLYT 468
                 566778888888888887775544334444444444443332222233333333334444444444222222222332333333333333333333333 PP

                 EEEEHHHHHHHHHCTSSHCTTE.....EEEEEETHHHHHHTTTHHHHHHHHHHSHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqv.....rflVlDEadrlldqgfsdfinrilnqlpqitc 154
                  +g  g  +++ +++ l l +v     ++l+lDEa    d+g ++ i++ l++++q t+
  CTQ26759.1 469 QLGEQGNNLSVGQKQLLALARVlvdtpQVLILDEATANIDSGTEQAIQQALAKVRQHTT 527
                 3333344444335555554444444448899****999999999999999999988775 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00016      0.16      11      36 ..     358     384 ..     349     388 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00016
      AAA_23  11 rdqeidF.skgltlItGpNGaGKTTil 36 
                 +d ++d  s+ +++++G++G+GK+T+ 
  CTQ26759.1 358 QDITLDIpSRSFVALVGHTGSGKSTLA 384
                 455566689999*************95 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00026      0.27      19      38 ..     366     385 ..     356     397 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
                 CSEEEEEEESTTSSHHHHHH CS
      NB-ARC  19 qslvvalvGmgGvGKttlak 38 
                  + +valvG  G+GK+tla+
  CTQ26759.1 366 SRSFVALVGHTGSGKSTLAS 385
                 5679**************98 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2    0.0018       1.9       2      97 ..     371     523 ..     370     547 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0018
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS....................................................S CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsellsk....................................................y 38 
                  l+G  G GK++la+ ++             g+++ ++s s l+                                                       
  CTQ26759.1 371 ALVGHTGSGKSTLASLMMGYYplthgeiridGRPLASLSHSALRRGiamvqqdpvvladtfyanvalgrdiseaqvwealeavqlaavarsmsdglytQ 469
                 699**************9996555555555557777777777774478888888888888888888888888888888888888888888888888775 PP

                 TTHHHHHHHHHHHHHHHTS.....TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTT CS
         AAA  39 vgesekkirelfkeakeka.....kpsilfiDEidalaksrsgseseeeervvnqLlteldgvk 97 
                 +ge+ ++++   k++ + a     +p +l++DE+ a + s        e+ ++++L +    v+
  CTQ26759.1 470 LGEQGNNLSVGQKQLLALArvlvdTPQVLILDEATANIDSG------TEQAIQQALAK----VR 523
                 56665555444444333334445788999999998888888......34444444433....33 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.1   0.00041      0.44       2      20 ..     370     388 ..     369     541 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00041
      AAA_33   2 vllvGlpGsGKstlaerll 20 
                 v lvG+ GsGKstla  ++
  CTQ26759.1 370 VALVGHTGSGKSTLASLMM 388
                 679************8776 PP

>> YbhQ  Putative inner membrane protein YbhQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2       1.9     2e+03      98     111 ..      65      78 ..      43      99 .. 0.57
   2 ?   11.5   1.1   0.00022      0.23      23      77 ..     156     204 ..     133     209 .. 0.74
   3 ?   -1.2   0.1       1.7   1.8e+03      68     115 ..     225     275 ..     207     280 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.9
        YbhQ  98 nnlllalvGlvlla 111
                   l +a +Gl lla
  CTQ26759.1  65 AGLAVAYIGLQLLA 78 
                 33333333333333 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00022
        YbhQ  23 lvvallvlGwkskalvkvglglvvlyavvlvamlllqrhpearlrevgdfleelt 77 
                 ++va++ l w      +++l+ ++++ +vl++m+++qr+ ++ +r+v   l ++ 
  CTQ26759.1 156 MLVAMFSLDW------RMALVAIAIFPAVLIVMIIYQRYSTPIVRRVRAWLADIN 204
                 4444444444......567778899**********************99998875 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.7
        YbhQ  68 evgdfleeltttyyfGaalial....yllsrvlhnnlllalvGlvllaGpal 115
                 + g+ + e++ ++y+   + +l    +ll  +l     l l+Gl++l G + 
  CTQ26759.1 225 RFGERMREASYAHYLA-RMQTLrldgFLLRPLLSLFSSLVLCGLLMLFGFSA 275
                 4566666666666653.33333223366666666666688999999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 4417.95
//
Query:       CTQ26760.1  [L=112]
Description: regulatory protein, P-II 2, for nitrogen assimilation by glutamine synthetase, regulates GlnL (NRII) and GlnE (ATase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-41  140.8   1.2    2.1e-41  140.7   1.2    1.0  1  P-II      Nitrogen regulatory protein P-II
  ------ inclusion threshold ------
      0.072   13.2   0.0       0.12   12.5   0.0    1.4  1  DUF3240   Protein of unknown function (DUF3240)


Domain annotation for each model (and alignments):
>> P-II  Nitrogen regulatory protein P-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   1.2   2.3e-45   2.1e-41       1     102 []       4     105 ..       4     105 .. 0.99

  Alignments for each domain:
  == domain 1  score: 140.7 bits;  conditional E-value: 2.3e-45
                 EEEEEEGGGHHHHHHHHHHTTGGCEEEEEEEEEESTCCEEEECTTEEEEEEEEEEEEEEEEEEGGGHHHHHHHHHHHH-SSSTTSEEEEEEEESEEEET CS
        P-II   1 ieaiirpekleevkeaLekagvkgltvtevkGrGkqkghtelyrgaeyevellpkvkleivvsdedvekvveaiikaaktgeiGDGkiFvlpveeviri 99 
                 ++++i+p+kle+v+eaL+++g++gltvtevkG+G+qkgh+elyrgaey+v++lpkvk+++++ d+++++v+++i kaa tg+iGDGkiFv ++++viri
  CTQ26760.1   4 VTVVIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEYSVNFLPKVKIDVAIADDQLDEVIDVISKAAYTGKIGDGKIFVAELQRVIRI 102
                 689************************************************************************************************ PP

                 TTT CS
        P-II 100 rtg 102
                 rtg
  CTQ26760.1 103 RTG 105
                 **8 PP

>> DUF3240  Protein of unknown function (DUF3240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.4e-05      0.12      18      84 ..      15      82 ..       2      87 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
     DUF3240 18 dlvDlLlelpdllsGFtlldakghsrevslati...aEkvrGradkvvveivleeaalerllaeLrkava 84
                d+  +L+     + G t+ ++kg++r+  +a+    aE      +kv++ ++++ ++l ++++ ++ka  
  CTQ26760.1 15 DVREALSSI--GIQGLTVTEVKGFGRQKGHAELyrgAEYSVNFLPKVKIDVAIADDQLDEVIDVISKAAY 82
                555556555..5789***********976654411156555667899****************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 853.03
//
Query:       CTQ26761.1  [L=428]
Description: ammonium transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-126  421.9  43.0   2.2e-126  421.8  43.0    1.0  1  Ammonium_transp  Ammonium Transporter Family


Domain annotation for each model (and alignments):
>> Ammonium_transp  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.8  43.0  1.2e-130  2.2e-126       1     399 []      33     426 ..      33     426 .. 0.96

  Alignments for each domain:
  == domain 1  score: 421.8 bits;  conditional E-value: 1.2e-130
                      HHHHHHHHHHHHH.HHHHHHHHHHHSSGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCBSSSSSCE-......TTTTSCCGCCTTCCHHHH CS
  Ammonium_transp   1 aflllsaalvifm.qagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfign......lglsaagvqdetlldglf 87 
                      af+++++alv+fm  +g+al+++gl+r knvl++l+++++ +++v++l+v++Gy+lafg+    ++f+g+       ++   ++ ++t++++++
       CTQ26761.1  33 AFMMICTALVLFMtIPGIALFYGGLIRGKNVLSMLTQVIVTFGLVCVLWVIYGYTLAFGTG---GSFFGSfdwvmlKNI-ELKALMGTFYQYIH 122
                      69***********99********************************************96...555555566664444.4566678999**** PP

                      HHHHHHHHHHHHHHHHHHCTTTB-HHHHHHHHHHHHHHTHHHHHHHHHS.SSHHHHTT--.-SSSTTTTHHHHHHHHHHHHHHHS-STTTTGTT CS
  Ammonium_transp  88 flfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaalvlgkregrfegk 181
                      ++fq +fa+++++++ ga+aeri+fsa+l+f ++++tl+y+p+ah+vwg gg+la++g+l DfAg+tvVH++++vagL++a+++gkr g +   
       CTQ26761.1 123 VAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWMTLSYVPIAHMVWG-GGLLATHGAL-DFAGGTVVHINAAVAGLVGAYMMGKRVGFG--- 211
                      *************************************************.**********.****************************99... PP

                      TSS--GSBHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHH.HHHHHHHHHHHHHHHHHHHHHHHCSS-BHHHHHHHHHHHHHHHTTTTTTS-HH CS
  Ammonium_transp 182 eeaikghnlpfavlGtllLwfgWfgFNaGsaltankrararaavtTllAaaagaltallisrlkegkinvlglanGilAGlVAiTaacavvepw 275
                      +ea+k+hnlp+++ Gt++L++gWfgFNaGsa +an++a+  a+v+T++A+aa++l++++ ++  +gk+++lg+++G++AGlV++T+ac+++ + 
       CTQ26761.1 212 KEAFKPHNLPMVFTGTAILYVGWFGFNAGSASAANEIAAL-AFVNTVVATAAAILAWTFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVG 304
                      9***************************************.***************************************************** PP

                      HHHHHHHHHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHHHHHTSHHHCSSHSSTTGGGT-CHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Ammonium_transp 276 gAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvvaskisggllsgegkqlvvqligilvilayafvvtlill 369
                      gAli+G+ +g+  ++gv++lk++l++dD++dv++vHgv+Gi+G++++gifaa++    + ++g+++g+  ql vql  i+++++++ vv++i +
       CTQ26761.1 305 GALIVGIASGLAGIWGVTALKRWLRVDDPCDVFGVHGVCGIVGCILTGIFAATSLGGVGYAEGVTMGH--QLLVQLESIAITVVWSGVVAFIGY 396
                      ******************************************************98888888888885..6*********************** PP

                      HHHHHHTTSB--HHHHHHSHHHHHHSSSSB CS
  Ammonium_transp 370 lllklllgLrvseeeeevglDvaehgetay 399
                      ++ ++++gLrv ee+e +glDv++hge+ay
       CTQ26761.1 397 KVADMTVGLRVPEEQEREGLDVNSHGENAY 426
                      ****************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1015  (0.0566122); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3398.66
//
Query:       CTQ26762.1  [L=287]
Description: acyl-CoA thioesterase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-64  214.9   0.0    1.9e-48  163.7   0.0    3.0  2  Acyl_CoA_thio  Acyl-CoA thioesterase
    1.8e-58  198.7   0.0    2.2e-58  198.4   0.0    1.0  1  4HBT_3         Thioesterase-like superfamily
    0.00071   19.9   0.0      0.013   15.9   0.0    2.2  2  4HBT           Thioesterase superfamily


Domain annotation for each model (and alignments):
>> Acyl_CoA_thio  Acyl-CoA thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   1.6e-15   9.5e-12       5     127 ..      21     106 ..      17     115 .. 0.89
   2 !  163.7   0.0   3.2e-52   1.9e-48       3     132 .]     149     281 ..     147     281 .. 0.99

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.6e-15
                    CCEC-.SEEEECSSSSBTTCHHHHHEECCCCCCCCTS-TTHCCCCCHHHHHTTSSSGGGGGGGGTTTSTTEEEEEEEEEEE-S--BTTS-EEEEEE CS
  Acyl_CoA_thio   5 lfeleypvevrpkelkrefgGqvvaekqsllrakktvPddallhsvllaYlSDltllltalttHelledslqvsldHsvyFlrpgdlnewilydve 100
                    lf+++   +++++ l+++fgGqvv   q+l++ak+tvP ++l+hs+                              Hs yFlrpgd++++i+ydve
     CTQ26762.1  21 LFRGQ---SEDLG-LRQVFGGQVVG--QALYAAKETVPVERLVHSF------------------------------HS-YFLRPGDSQKPIVYDVE 79 
                    56666...67888.99*********..*******************..............................**.***************** PP

                    EEEEETTEEEEEECCEE......ECTTEEEEE..E CS
  Acyl_CoA_thio 101 spsasggrgLrqGriFs......tqdgklias..v 127
                             Lr+G++Fs      +q+gk i++  +
     CTQ26762.1  80 V--------LRDGNSFSarrvaaIQNGKPIFYmtA 106
                    *........*********************98550 PP

  == domain 2  score: 163.7 bits;  conditional E-value: 3.2e-52
                    CTCCEC-.SEEEECSSSSBTTCHHHHH.EECCCCCCCCTS-TTHCCCCCHHHHHTTSSSGGGGGGGGT..TTSTTEEE.EEEEEEEE-S--BTTS- CS
  Acyl_CoA_thio   3 kelfeleypvevrpkelkrefgGqvva.ekqsllrakktvPddallhsvllaYlSDltllltalttHe..lledslqv.sldHsvyFlrpgdlnew 94 
                    k++f ++ p+e+rp e++++ +G+ ++  +q++lra++ vPdd ++h++ll+Y+SD+++l++al++H+  +le+++qv ++dHs++F+rp+++new
     CTQ26762.1 149 KDKFLCDKPLEIRPVEFHNPMKGHIAEpVRQVWLRANGAVPDDLRIHQYLLGYASDFNFLPVALQPHGvgFLEPGMQVaTIDHSMWFHRPFNINEW 244
                    799********************************************************************************************* PP

                    EEEEEEEEEEETTEEEEEECCEEECTTEEEEEEEEEEE CS
  Acyl_CoA_thio  95 ilydvespsasggrgLrqGriFstqdgkliasvqqeGl 132
                    +ly+ves+sas++rg+++G+++ tqdg+l+as++qeG+
     CTQ26762.1 245 LLYSVESTSASSARGFVRGEFY-TQDGTLVASTVQEGV 281
                    **********************.*************96 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.4   0.0   3.7e-62   2.2e-58      10     248 .]      33     282 ..      27     282 .. 0.85

  Alignments for each domain:
  == domain 1  score: 198.4 bits;  conditional E-value: 3.7e-62
                 C.-HHHHHHHHHHHHHHT.-S.SS.EEEEEEE-S---SE.EEEEEEEEEE--SS-EEEEEEEEETTEEEEEEEEEEE---T....---EE-------.G CS
      4HBT_3  10 agyGGyvlAlalraaqrtvpdprl.hslhvyFlrpgdag.pviyhvervrdGrsfstrtvelsqggrpiftatasfgraestgwelepaaapppvpppd 106
                 +++GG+v+++al aa++tvp  rl hs+h yFlrpgd++ p++y ve++rdG sfs r+v ++q+g+pif +tasf+++e+ g   e+++a+p+ p+pd
  CTQ26762.1  33 QVFGGQVVGQALYAAKETVPVERLvHSFHSYFLRPGDSQkPIVYDVEVLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEN-G--YEHQKAMPAAPSPD 128
                 57*****************866778*******************************************************7.6..5556689999**99 PP

                 GGE---...--SSGGGS.GG....TEE.EE-HHT---S........S-EEEEEEEET...TTS-SSHHHHHHHHTT-....-GGGGTSS-......SB- CS
      4HBT_3 107 eaalaad..eaplplfr.rvpg..fle.pfeprpaeggkpd.spagpkrvrqWvrlr...eggepahlaaLaylsDs.f..pvprvhglrldaeasgwm 192
                   + ++d  ++  +l + +v++   ++ p+e+rp+e ++p   + +++  ++W+r++   +++ + h+  L+y+sD+ f  +++  hg+ + +++ + +
  CTQ26762.1 129 GLPSETDiaRKLAHLLPpQVKDkfLCDkPLEIRPVEFHNPMkGHIAEPVRQVWLRANgavPDDLRIHQYLLGYASDFnFlpVALQPHGVGFLEPG-MQV 226
                 99777767734444444455333366789****9988888756666888899****988766789***9*********98766777777766677.788 PP

                 -EEEEEEEE-S--.S-...EEEEEE-SEEETTEEEEEEEEE-TTS-EEEEEEEEEET CS
      4HBT_3 193 psldltiyfhrep.aedeWllleaetpwagdgrglvearlwdedGrlvAtstQeglv 248
                 +++d++++fhr p + +eWll+ +e+++a+  rg+v+++++++dG+lvA+++Qeg++
  CTQ26762.1 227 ATIDHSMWFHR-PfNINEWLLYSVESTSASSARGFVRGEFYTQDGTLVASTVQEGVM 282
                 8**********.62448**************************************97 PP

>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.064   3.8e+02      33      62 ..      57      86 ..      40      93 .. 0.83
   2 !   15.9   0.0   2.1e-06     0.013      27      79 .]     218     274 ..     209     274 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.064
                EEEEEEEESS-BBTTCEEEEEEEEEEEESS CS
        4HBT 33 vvelsidflrpvrlgdeltvearvlrlgrt 62
                v +++  flrp+    +++ +++vlr g++
  CTQ26762.1 57 VHSFHSYFLRPGDSQKPIVYDVEVLRDGNS 86
                6778889******99999999999998876 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2.1e-06
                 T....TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEEE CS
        4HBT  27 r....gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrlva 79 
                 +    g  v++++ s+ f+rp  + ++l+  ++ + +++++ +v+ e++++dg+lva
  CTQ26762.1 218 GflepGMQVATIDHSMWFHRPFNINEWLLYSVESTSASSARGFVRGEFYTQDGTLVA 274
                 344557899********************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2094.52
//
Query:       CTQ26763.1  [L=163]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-41  141.6   0.3    1.4e-41  141.1   0.3    1.2  1  YscW      Type III secretion system lipoprotein chaperone (Ys


Domain annotation for each model (and alignments):
>> YscW  Type III secretion system lipoprotein chaperone (YscW)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   0.3   7.9e-46   1.4e-41       2     107 .]      47     151 ..      46     151 .. 0.98

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 7.9e-46
                 -EEEEEEEEE...SS--TT-EEEEEEEEEE..ETTEEEEEEEEEEEESS..SSEEEEEEEEHHHHTT--EE.EEEEEEETT--S--EEEEEEE...-TT CS
        YscW   2 aaqtvsGtVtyrerialppdavltVeLsdvSladapakvlaeqeirtegkqvPlsFsLsydparikpraryavsArievdgkllfitdtvypvitrgag 100
                 ++++v+Gt+++r+rialppdavltV+Lsd+Sladapa+vl+++++rtegkq+P++F+L+y+pa+i+p+ar+ +sA+i+v+g+l+fitdtv++vi++g g
  CTQ26763.1  47 QQPSVTGTINIRQRIALPPDAVLTVTLSDASLADAPARVLSQKAVRTEGKQAPFNFALPYNPADIQPNARILLSAAITVNGQLMFITDTVQTVINQG-G 144
                 789**********************************************************************************************.9 PP

                 SEEEEE- CS
        YscW 101 nkadlqL 107
                 ++adl+L
  CTQ26763.1 145 THADLTL 151
                 9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1297.47
//
Query:       CTQ26764.1  [L=103]
Description: Methylated-DNA-(protein)-cysteine S-methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-26   90.3   0.1    7.3e-26   90.1   0.1    1.1  1  DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA b
  ------ inclusion threshold ------
       0.15   11.8   0.0        2.4    7.9   0.0    2.1  2  DUF1654        Protein of unknown function (DUF1654)


Domain annotation for each model (and alignments):
>> DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.1   8.1e-30   7.3e-26       2      81 .]       7      86 ..       6      86 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 8.1e-30
                   HHHHHHHHHTTS-TT-BEEHHHHHHHTT.TSCHHHHHHHHHTSSBTTTSGGGGEEBTTSBCCTTTTCHHHHHHHHHHTTS CS
  DNA_binding_1  2 fqqrVwellrqIpyGkvttYgeiAkllgkpkaaraVgqalaanplailvPcHRVvgadgklggyagglerkralLeaEgv 81
                   f qrVw+++ +Ip G vttYge+A+l+g+p+aar+Vg++l+++p    +P+HRVv++ g ++     l+r+r++L aEgv
     CTQ26764.1  7 FPQRVWHIVASIPEGYVTTYGEVARLAGSPRAARQVGGVLKRLPKGSTLPWHRVVNRHGDISLTGPDLQRQRQALLAEGV 86
                   889***************************************************************************97 PP

>> DUF1654  Protein of unknown function (DUF1654)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00027       2.4      10      43 ..      29      62 ..      27      68 .. 0.92
   2 ?    1.6   0.0     0.025   2.3e+02      16      27 ..      71      82 ..      66      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00027
     DUF1654 10 iqriinaPaaQkaraavvlrledeseddWerlle 43
                + r+  +P a ++   v+ rl+  s   W r+++
  CTQ26764.1 29 VARLAGSPRAARQVGGVLKRLPKGSTLPWHRVVN 62
                678899*************************997 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.025
     DUF1654 16 aPaaQkaraavv 27
                 P+ Q++r+a++
  CTQ26764.1 71 GPDLQRQRQALL 82
                699*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 798.29
//
Query:       CTQ26765.1  [L=135]
Description: putative dTDP-glucose pyrophosphorylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       182  (0.0101512); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 1076.03
//
Query:       CTQ26766.1  [L=85]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.014   15.9   0.1      0.022   15.2   0.1    1.4  1  DUF2274   Protein of unknown function (DUF2274)


Domain annotation for each model (and alignments):
>> DUF2274  Protein of unknown function (DUF2274)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   1.2e-06     0.022      14      45 ..       3      35 ..       1      45 [. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-06
     DUF2274 14 pvkltvelpaalhrdLaaYaellaretgeaa.d 45
                 v l v+++a+l+++L+ Yae+ +++ g+a+ +
  CTQ26766.1  3 TVVLNVKIDAELKEKLRHYAEVNNENLGTATeK 35
                68899*******************999998744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       901  (0.0502538); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 664.33
//
Query:       CTQ26767.1  [L=71]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 530.72
//
Query:       CTQ26768.1  [L=475]
Description: Transcriptional regulator, GntR family/aminotransferase family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-27   96.8   0.0    1.9e-27   96.4   0.0    1.1  1  Aminotran_1_2   Aminotransferase class I and II
    4.5e-16   58.2   1.0    4.5e-16   58.2   1.0    1.8  2  GntR            Bacterial regulatory proteins, gntR family
    0.00026   21.3   0.0    0.00061   20.1   0.0    1.6  1  Rrf2            Transcriptional regulator
    0.00031   20.6   0.3     0.0014   18.5   0.2    2.3  2  HTH_Crp_2       Crp-like helix-turn-helix domain
    0.00043   20.2   0.1    0.00098   19.0   0.1    1.6  1  HTH_11          HTH domain
     0.0042   17.2   0.8     0.0099   16.0   0.1    2.1  2  HTH_28          Helix-turn-helix domain
     0.0047   16.5   0.3      0.017   14.7   0.0    2.1  2  HTH_24          Winged helix-turn-helix DNA-binding
      0.007   16.3   0.1      0.016   15.1   0.1    1.6  1  MarR            MarR family
  ------ inclusion threshold ------
      0.022   14.6   0.0      0.041   13.8   0.0    1.3  1  TrmB            Sugar-specific transcriptional regulator TrmB
      0.046   13.6   0.6       0.77    9.7   0.1    2.6  2  MarR_2          MarR family
      0.099   13.2   0.0       0.24   11.9   0.0    1.6  1  HTH_27          Winged helix DNA-binding domain
       0.11   12.5   0.0        0.3   11.1   0.0    1.7  1  HTH_29          Winged helix-turn helix
        0.2   11.9   0.0        0.5   10.6   0.0    1.7  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.0   1.4e-30   1.9e-27      42     360 ..     143     452 ..     108     455 .. 0.88

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 1.4e-30
                    BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHH CS
  Aminotran_1_2  42 pidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealee 137
                    +++glp l+ea+a+ ++ + +l++ ++ +v v +Ga ++ +++ +l+   pgd++++++pty++ + +++ + +  v ++l    + + d ++l +
     CTQ26768.1 143 DQQGLPVLREAIARRYS-ERGLPTRPD-EVMVVNGALSAFALILRLF-TGPGDRVVIDAPTYPMAISAIQGASCRPVGVALP---QQGWDCDGLAA 232
                    899**************.99*******.*******************.7*******************************55...77889999999 PP

                    HHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEE CS
  Aminotran_1_2 138 alkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyi 233
                     +++ +    ++   l    hNPtG  ++ ++ + ++d+a + +  l++De+ a++ ++++ + + +a ++++ ++l+ gs +K+f   G+R+G+i
     CTQ26768.1 233 TIAQTA----PRLAWLMPDFHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPP-LASFNPDAAVLTIGSAGKSF-WGGLRIGWI 322
                    999966....56679999*****************************************887666.999****9************.56******* PP

                    EEEHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..TEEEECCSCSSEEEEEETHHCHHHHHHHHHH CS
  Aminotran_1_2 234 lgnaavvsqlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael..glkvlasqsgmflltdlsaetakelskkLle 326
                     ++a+ +  l ++  ++   + ll +++  +l     +   l  +r+ l++rr+ +   +ae    + + ++++g+  +++l+   a+ l+ + +e
     CTQ26768.1 323 RASARTIASLIQARDSLDLgTPLLEQLACSWLLENAAT--LLPPRRDMLKARRDMCETLMAEYfpRWRFSPPEGGLSFWVELPDMLAT-LFSARAE 415
                    ****9999999999998887666666666666666655..7999*******999999999888********************99554.5555555 PP

                    TCTEEEEEGGGGTS....TTEEEEECTTS-HHHHHHHH CS
  Aminotran_1_2 327 evgvyvtpgtsftv....pgrlRitvAglteeeleelv 360
                     +g+++  gt f++       lR+ + +l++e l ++ 
     CTQ26768.1 416 SQGIHIGTGTRFGLegafDRYLRLPF-TLPDEALHRAF 452
                    56************9999999***99.99999998886 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   1.0   3.3e-19   4.5e-16       3      64 .]      29      90 ..      27      90 .. 0.97
   2 ?   -3.1   0.0       4.8   6.6e+03      39      47 ..     148     156 ..     146     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 3.3e-19
                HHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  3 eqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                +q++e+Lr +Il+g+l+  ++LP ereLaa+++Vsrtt+  AL +L +eg + +rqg+G ++
  CTQ26768.1 29 RQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRI 90
                6899*******************************************************876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.8
                 HHHHHHHHH CS
        GntR  39 ttvReALrr 47 
                 +++ReA+ r
  CTQ26768.1 148 PVLREAIAR 156
                 689999976 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.5e-07   0.00061      29      73 ..      54      98 ..      34     102 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.5e-07
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSHCCC CS
        Rrf2 29 eeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakppee 73
                +e+a+  n+s++ ++  l +Lr++g++ s++G g  ++L + p++
  CTQ26768.1 54 RELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVLPERPAD 98
                79********************************99999998887 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2     1e-06    0.0014      25      61 ..      54      94 ..      30      97 .. 0.78
   2 ?   -2.6   0.0         4   5.5e+03      23      38 ..     260     275 ..     243     276 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1e-06
                HHHHHHTTSSHHHHHHHHHHHHHTTSEE.E.T..EEEEES- CS
   HTH_Crp_2 25 eelAsmlGltretvsrilseLkreglis.r.g..rririld 61
                +elA+ l+++r t+  +l++L++eg +  r g   ri+++ 
  CTQ26768.1 54 RELAAALNVSRTTIASALGQLREEGFLYsRqGsgSRIVLPE 94
                79************************997533222377665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4
                 HHHHHHHHTTSSHHHH CS
   HTH_Crp_2  23 tqeelAsmlGltretv 38 
                 t++  A++   tr t+
  CTQ26768.1 260 TRQRVADIAARTRTTL 275
                 8888888888888875 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   7.1e-07   0.00098      20      53 ..      55      87 ..      44      89 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 7.1e-07
      HTH_11 20 eLAeeLnvSrrtvrrdIkaLeelgvpIesepgrG 53
                eLA  LnvSr+t+   + +L+e g  ++s++g+G
  CTQ26768.1 55 ELAAALNVSRTTIASALGQLREEG-FLYSRQGSG 87
                9***********************.999999988 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   7.1e-06    0.0099      16      50 ..      54      86 ..      32      88 .. 0.89
   2 ?   -2.8   0.1       5.1     7e+03      25      35 ..     325     335 ..     321     338 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.1e-06
      HTH_28 16 reaArelgisrrtvyrWikryeegGiagLvprrrr 50
                re+A++l++sr+t+ + + +++e+G+  L+ r ++
  CTQ26768.1 54 RELAAALNVSRTTIASALGQLREEGF--LYSRQGS 86
                68***********************9..8888775 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.1
      HTH_28  25 srrtvyrWikr 35 
                 s rt+ ++i++
  CTQ26768.1 325 SARTIASLIQA 335
                 78999999987 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         2   2.8e+03       9      19 ..      35      45 ..      24      47 .. 0.75
   2 !   14.7   0.0   1.2e-05     0.017      21      46 ..      54      79 ..      53      81 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2
      HTH_24  9 LelLqknpris 19
                L+lL  ++r++
  CTQ26768.1 35 LRLLILDGRLT 45
                67777777777 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.2e-05
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGl 46
                reLA +l++S++t+   l +L eeG+
  CTQ26768.1 54 RELAAALNVSRTTIASALGQLREEGF 79
                8************************8 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.2e-05     0.016      21      52 ..      54      85 ..      29      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEE CS
        MarR 21 seLakklgvskstvtrvldrLekkGlieRsks 52
                 eLa +l+vs++t+  +l +L ++G++++++ 
  CTQ26768.1 54 RELAAALNVSRTTIASALGQLREEGFLYSRQG 85
                59**************************9986 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.9e-05     0.041      26      58 ..      54      86 ..      51      97 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.9e-05
                CHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 26 deiaeelgvprskvYevLrsLedkGlVerekgr 58
                +e+a +l+v+r+++ ++L +L + G+ + ++g+
  CTQ26768.1 54 RELAAALNVSRTTIASALGQLREEGFLYSRQGS 86
                79*************************999987 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00056      0.77      25      57 ..      54      86 ..      51      89 .. 0.91
   2 ?    1.1   0.1      0.27   3.7e+02      19      32 ..     258     272 ..     249     274 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00056
                HHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESS CS
      MarR_2 25 gelarrlglsksavsrilkrLvaaGLverrpgp 57
                +ela++l++s+ ++  +l  L + G++  r g+
  CTQ26768.1 54 RELAAALNVSRTTIASALGQLREEGFLYSRQGS 86
                59************************9988775 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.27
                 TS.EEEHHHHHHHHT CS
      MarR_2  19 gr.dltvgelarrlg 32 
                  + + +v+++a+r++
  CTQ26768.1 258 APtRQRVADIAARTR 272
                 33467*******986 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.24      22      52 ..      54      85 ..      47      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
      HTH_27 22 adlcgrlnvedshisyslkkLtekGLv.ertg 52
                ++l+ +lnv+ ++i+++l +L e G++  r+g
  CTQ26768.1 54 RELAAALNVSRTTIASALGQLREEGFLySRQG 85
                89*************************54444 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00022       0.3      16      55 ..      54      89 ..      51      95 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
      HTH_29 16 sqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn 55
                +++A++l++sr+t+  +l   +e+G   l +r  +g +++
  CTQ26768.1 54 RELAAALNVSRTTIASALGQLREEGF--LYSR--QGSGSR 89
                689**********************3..5544..455554 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00036       0.5      23      52 ..      51      80 ..      44      87 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00036
                    B-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
  Fe_dep_repress 23 vktkdlaerLnvspssVsemlkkLekdGyv 52
                    ++  +la +Lnvs  ++   l  L+++G++
      CTQ26768.1 51 PGERELAAALNVSRTTIASALGQLREEGFL 80
                    66789***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3760.31
//
Query:       CTQ26769.1  [L=204]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.012   15.0  12.6      0.027   13.8   2.8    2.4  3  YitT_membrane  Uncharacterised 5xTM membrane BCR, YitT family


Domain annotation for each model (and alignments):
>> YitT_membrane  Uncharacterised 5xTM membrane BCR, YitT family COG1284
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.8   1.5e-06     0.027      99     160 ..       5      66 ..       3      91 .. 0.88
   2 ?    3.3   4.5    0.0026        46     105     168 ..     107     173 ..      70     176 .. 0.59
   3 ?    5.8   2.5   0.00043       7.8       7      86 ..     105     183 ..     100     196 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-06
  YitT_membrane  99 llaaifggvllGiGvGivfragastGGtdiialilnkktglsvgkilliidlvivllagfvf 160
                    ll++ +g vl+G+ ++++++a+   +  d++ l + k++g+s g++++++ ++++ll + + 
     CTQ26769.1   5 LLQLYIGLVLYGVSTALFVHANLGADPWDVFHLGVAKQLGISFGTVIILTGAAVLLLWIPIR 66 
                    89999*************************************************99987665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0026
  YitT_membrane 105 ggvllGiGvGivfragastGGtdiialilnkktglsvgkilliidlvivllagfv...fdietalys 168
                    + vl++i++G+ + ag   G  d +   l+ +tg+s+  i ++i l ++l+++++   f++ t++y+
     CTQ26769.1 107 AIVLNAIATGMYIGAGFGPGPRDGLMTGLHARTGWSLRGIRTAIELSVLLIGWLLggkFGVGTVIYA 173
                    3355677777777777777777777777777777777777777777777777665333455555555 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.00043
  YitT_membrane   7 lgsllyAlginlfllpnkiatGGvtGialilnyltglpigilvlilNipllilgykilgkkfvlktlvailllsvfldll 86 
                    +g+++  +    +++ + + +G   G+ + l++ tg+++  + + + + +l++g+  lg kf++ t++  l +  +++l 
     CTQ26769.1 105 AGAIVLNAIATGMYIGAGFGPGPRDGLMTGLHARTGWSLRGIRTAIELSVLLIGWL-LGGKFGVGTVIYALSIGPLIQLC 183
                    45544444445567777888888888888888888888888888888888888885.66677777777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1499.54
//
Query:       CTQ26770.1  [L=299]
Description: nickel and cobalt resistance [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-44  152.5  17.2    2.2e-44  151.9  17.2    1.2  1  NicO             High-affinity nickel-transport protein
      3e-09   36.6   0.0    1.1e-08   34.8   0.0    2.0  1  SfLAP            Sap, sulfolipid-1-addressing protein
    2.2e-07   31.0  19.3    1.6e-06   28.2   4.5    3.2  4  DsbD_2           Cytochrome C biogenesis protein transmembran
    0.00022   21.2   1.5    0.00022   21.2   1.5    2.0  2  DsbD             Cytochrome C biogenesis protein transmembran
    0.00064   19.4  14.9      0.003   17.2  10.6    2.4  2  TauE             Sulfite exporter TauE/SafE
     0.0011   18.6   1.5      0.024   14.3   0.6    2.2  2  FAM176           FAM176 family
  ------ inclusion threshold ------
      0.012   15.0   4.7      0.016   14.6   4.7    1.1  1  FAM76            FAM76 protein
      0.021   14.8  11.7       0.03   14.3   4.4    2.3  2  Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
      0.062   12.9   0.0      0.088   12.4   0.0    1.2  1  SARAF            SOCE-associated regulatory factor of calcium
      0.072   12.8   7.3       0.12   12.1   0.3    3.1  3  Cation_efflux    Cation efflux family
      0.086   12.6   0.0       0.15   11.9   0.0    1.3  1  CDC48_2          Cell division protein 48 (CDC48), domain 2
       0.16    9.9   3.7       0.22    9.4   3.7    1.2  1  V_ATPase_I       V-type ATPase 116kDa subunit family
       0.49   10.8   4.5        3.8    7.9   0.0    2.5  2  DUF4199          Protein of unknown function (DUF4199)
        2.2    9.1   8.5        3.3    8.5   8.5    1.2  1  Apc15p           Apc15p protein
        4.9    7.5  24.0        2.6    8.4   5.7    3.3  2  DUF308           Short repeat of unknown function (DUF308)
        6.3    6.4   7.6        4.6    6.9   2.5    2.5  2  Tetraspanin      Tetraspanin family


Domain annotation for each model (and alignments):
>> NicO  High-affinity nickel-transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9  17.2   1.9e-47   2.2e-44       1     276 [.      13     295 ..      13     298 .. 0.86

  Alignments for each domain:
  == domain 1  score: 151.9 bits;  conditional E-value: 1.9e-47
        NicO   1 llvliglsflyGvrHAvdagHgkaiirklmqagktalkrGillslgsslvvvlvavllvvaavlvlrltslsetgaaigteiasFllvilllnllllrk 99 
                 ++ +i++++l+G++H++++gH+k++++++++a + +lk+++ll+l++++++++v++l+++a  ++ r    ++++++++ +++s ++++l++ ++l+r+
  CTQ26770.1  13 AWLFIPSAILLGALHGLEPGHSKTMMAAFIVAVRGTLKQAVLLGLAATVSHTAVVWLIAMAGLWFGR--GWNAQTSEPWFQLVSGIVIVLIACWMLWRT 109
                 599****************************************************************..89999************************* PP

        NicO 100 lrklfrklerlgrapaaeleaalakrgllsrilgk.....lfrlitkswhmypvgflfg.....lGfdtateiallaidpsealkgdsfdsilalpalf 188
                 +r++  + ++ ++ ++++  + +++++ +++ +++     + +++++ + +++++         + + ++++ +++a ++ ++++g++++  ++ ++ +
  CTQ26770.1 110 WRETQPHTHH-DHHHEHDHHHEHDHHHEHDHHHEHdhyheHDHHHEHDHRHDHHHASSSaaplvAEEWQDAHQRAHAQEINRRFDGRQVTTGQIVLFGL 207
                 ****999988.77777777777777755555554443322222222223333333222211222458899***************************** PP

        NicO 189 avGlrlcdgadivlmfaalnwaflggrklvyamsitgtsitvalliglivtlklvakkfalsgslwaaiisleleivGavlvllfall 276
                 + Gl++c++ ++vl+++++ + f+ g+++v+ +s++++ ++va +++++++lk    ++ + + l +++++++  ++ +v ++++ + 
  CTQ26770.1 208 TGGLIPCPASITVLLICLQLKKFSLGATMVLGFSVGLALTLVASGAIAALSLKHATRRWPWLNDLSRKAPWFSGLLIIVVGIYMMLHG 295
                 *************************************************************************777778888887765 PP

>> SfLAP  Sap, sulfolipid-1-addressing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   9.6e-12   1.1e-08      35     214 .]      54     297 ..      20     297 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 9.6e-12
       SfLAP  35 lvgwlvvlvalglivlfvlrsllsgasaapssaikalqivlGvlllllaaveavrr........................................... 90 
                 l+g +++   ++++ l ++++l  g    ++++ +++q+v G++++l+a ++++r+                                           
  CTQ26770.1  54 LLGLAATVSHTAVVWLIAMAGLWFGRGWNAQTSEPWFQLVSGIVIVLIACWMLWRTwretqphthhdhhhehdhhhehdhhhehdhhhehdhyhehdhh 152
                 6889999999999999999999955545599******************************************************************** PP

       SfLAP  91 ........................pkassrselprllsrle..slleggalwvAlvlgllsakplllylaalaaigasgasvgtqvvalvvFvvvalav 163
                                         + a++r++ +   +r++  ++++g+ ++++l  gl+  + ++ +l++ + + +  + ++  ++  v+  ++ +a+
  CTQ26770.1 153 hehdhrhdhhhasssaaplvaeewQDAHQRAHAQEINRRFDgrQVTTGQIVLFGLTGGLIPCPASITVLLICLQLKKFSLGATMVLGFSVGLALTLVAS 251
                 ************************9***************999*****************************999999999555554444444444444 PP

       SfLAP 164 veipllaylvapertqavlerlkdwlrsnrrlilavilgvvGllllakGls 214
                  +i  l+     + +  +  +l+d  r+  +   +++ +vvG++++ +Gls
  CTQ26770.1 252 GAIAALSL----KHATRRWPWLNDLSRKAPW-FSGLLIIVVGIYMMLHGLS 297
                 44433333....3333445788888877777.5677889999*99999985 PP

>> DsbD_2  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   6.2    0.0058       6.5     118     197 ..      17     102 ..       3     104 .. 0.75
   2 !    6.9   4.0    0.0048       5.4      35      94 ..      52     111 ..      36     129 .. 0.58
   3 !   28.2   4.5   1.4e-09   1.6e-06     106     198 ..     183     289 ..     166     290 .. 0.77
   4 ?    0.6   0.1      0.41   4.6e+02      73      90 ..     276     293 ..     267     298 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0058
      DsbD_2 118 lasalllGllnGllpCgl.vysalllalasgsaleGalvmlaFgLGTlpalllfglllgll....skklrkkllr.lagvllillg 197
                  +sa+llG+l+Gl p     ++a++++++ g + + +l+ la  +    +++l++++  ++    ++++++ +++ ++g++++l++
  CTQ26770.1  17 IPSAILLGALHGLEPGHSkTMMAAFIVAVRGTLKQAVLLGLAATVSHTAVVWLIAMAGLWFgrgwNAQTSEPWFQlVSGIVIVLIA 102
                 5899***********8665888999999999999*****999999987777777777777722224466699*9945556665555 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0048
      DsbD_2  35 lllynlGRilsYallGalvgllgsvlqlageleglrallgvllgllllllglklllkkkl 94 
                  +l  l+ ++s +++  l++++g  +    +++  + +++++ g++++l++ ++l++ + 
  CTQ26770.1  52 AVLLGLAATVSHTAVVWLIAMAGLWFGRGWNAQTSEPWFQLVSGIVIVLIACWMLWRTWR 111
                 445555556666666666666666666665555555555555555555555555544332 PP

  == domain 3  score: 28.2 bits;  conditional E-value: 1.4e-09
      DsbD_2 106 rllkklakkl....kslasalllGllnGllpCglvysalllalasgsaleGalvmlaFgLGTlpalllfglllgl.lskklr.........kkllrlag 190
                 ++ +++ +++     ++ +++l+Gl  Gl+pC+   ++ll++l  ++++ Ga + l F++G  ++l++ g++++l l++++r         +k   ++g
  CTQ26770.1 183 AHAQEINRRFdgrqVTTGQIVLFGLTGGLIPCPASITVLLICLQLKKFSLGATMVLGFSVGLALTLVASGAIAALsLKHATRrwpwlndlsRKAPWFSG 281
                 444555555566557899*****************************************************9999444444444455444455566777 PP

      DsbD_2 191 vllillgl 198
                 +l+i++g+
  CTQ26770.1 282 LLIIVVGI 289
                 77777776 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.41
      DsbD_2  73 lgvllgllllllglklll 90 
                 + ++ gll++++g++++l
  CTQ26770.1 276 APWFSGLLIIVVGIYMML 293
                 444555555555555442 PP

>> DsbD  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.6      0.61   6.8e+02     149     210 ..      44     104 ..      20     107 .. 0.63
   2 !   21.2   1.5   1.9e-07   0.00022     123     213 .]     203     293 ..     184     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.61
        DsbD 149 askeslakgallllvyvlGlaipfllvglllellkkklkslkkyskaveiaggvllvllGvl 210
                 a +++l +++ll l+ ++  ++++ l+++       +    +    +++ ++g+++vl+   
  CTQ26770.1  44 AVRGTLKQAVLLGLAATVSHTAVVWLIAMAGL-WFGRGWNAQTSEPWFQLVSGIVIVLIACW 104
                 45555556666666666666665555543322.22244445566678888888888887655 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 1.9e-07
        DsbD 123 lllGltFalgwsPCigPvlasvlalaaskeslakgallllvyvlGlaipfl....lvglllellkkklkslkkyskaveiaggvllvllGvllll 213
                 +l+Glt +l+  PC + +  +vl++  + ++ ++ga+++l +++Gla+ ++    +++l l+ + ++  +l+  s++    +g+l++++G++++l
  CTQ26770.1 203 VLFGLTGGLI--PCPASI--TVLLICLQLKKFSLGATMVLGFSVGLALTLVasgaIAALSLKHATRRWPWLNDLSRKAPWFSGLLIIVVGIYMML 293
                 5667766555..775555..566666677778******************9444456666777888899***********************996 PP

>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2  10.6   2.7e-06     0.003      38     184 ..      38     256 ..       8     269 .. 0.63
   2 ?    1.2   5.6      0.21   2.4e+02      80     144 ..     233     296 ..     215     299 .] 0.57

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.7e-06
        TauE  38 atsllavvatslsgalahrrr.g.nvdwrlllllllgsliGallGallllllpsellkllfgvlllllallmllrkkr..................... 113
                 +    a+++ ++ g+l++    g +  ++ + +++l +++G ++G    +++++++++l+ g++++l+a +ml+r  r                     
  CTQ26770.1  38 M----AAFIVAVRGTLKQAVLlGlAATVSHTAVVWLIAMAGLWFGRGWNAQTSEPWFQLVSGIVIVLIACWMLWRTWRetqphthhdhhhehdhhhehd 132
                 2....333333444444433222234566677778889************************************8888889999999999999999999 PP

        TauE 114 .........................................................srakgrerrptaillvligglvGllsGllGiGgGfllvplll 155
                                                                          +r     r+ t   +vl+g+++Gl+    +i   +ll+ l l
  CTQ26770.1 133 hhhehdhhhehdhyhehdhhhehdhrhdhhhasssaaplvaeewqdahqrahaqeinRRF--DGRQVTTGQIVLFGLTGGLIPCPASIT--VLLICLQL 227
                 999999999999999999988888888888888888888887777776655333221111..122222222233333344444433333..33344444 PP

        TauE 156 lllglplkkavatslllilvislagalgy 184
                   + l  + + + s+ l+l+ +++ga++ 
  CTQ26770.1 228 KKFSLGATMVLGFSVGLALTLVASGAIAA 256
                 44455555555555555555555555554 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.21
        TauE  80 Gallllllpse.llkllfgvlllllallmllrkkrsrak..grerrptaillvligglvGllsGllGi 144
                 Ga ++l ++   +l+l+ + ++++l+l  ++r+     +  +   r+ +++++l+ ++vG++  l G 
  CTQ26770.1 233 GATMVLGFSVGlALTLVASGAIAALSLKHATRRW----PwlNDLSRKAPWFSGLLIIVVGIYMMLHGL 296
                 4444444433323444444444444444444443....134557777777777776779988776665 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.6   2.1e-05     0.024      50     119 ..     116     191 ..      90     195 .. 0.43
   2 ?    2.9   0.0     0.069        77      24      40 ..     234     250 ..     226     271 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.1e-05
      FAM176  50 dlerlkkkkkklkeesekasededeeeeeeeedsseseaeeel.........sefertlsvnvftsaeelerAqRlEeR 119
                 +++   ++++++++++++++++++ ++++e+++ +e++ ++e          s++  +l ++ +++a +  +Aq + +R
  CTQ26770.1 116 HTH---HDHHHEHDHHHEHDHHHEHDHHHEHDHYHEHDHHHEHdhrhdhhhaSSSAAPLVAEEWQDAHQRAHAQEINRR 191
                 222...1111111111111222222222222222222222211333344455777888889999999999999988887 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.069
      FAM176  24 LlFvlgvcvGLlltLcl 40 
                    vlg +vGL ltL++
  CTQ26770.1 234 ATMVLGFSVGLALTLVA 250
                 56799**********97 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   4.7   1.4e-05     0.016     122     193 ..     101     174 ..      92     203 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
       FAM76 122 lLCwlCtlsykralakakeeeeekrskskkkkskskkskkskekskekkaskkkskkhkkrssrlevskle...e 193
                 + Cw+     + ++ ++++++++++ +++++ +++++++++++ +  +++++++++ h++ +++ ++s++    e
  CTQ26770.1 101 IACWMLWRTWRETQPHTHHDHHHEHDHHHEHDHHHEHDHHHEHDH-YHEHDHHHEHDHRHDHHHASSSAAPlvaE 174
                 558888888888888888888776666666655555555544433.22233333333333333333333223321 PP

>> Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   4.4   2.7e-05      0.03       8      74 ..      46     112 ..      45     124 .. 0.88
   2 ?    4.6   0.7     0.026        29      18      70 ..     233     294 ..     226     297 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.7e-05
  Abhydrolase_9_N   8 RtwlfqgvvsGlsaaiGYglGvllawlvrrllrlpepsrrvrr.rlrlalavvalvvllvalvlaarw 74 
                      R+ l q+v+ Gl+a++ +++ v l +++  +  ++ +++++++ +++l+  +v++++++++l++ +r 
       CTQ26770.1  46 RGTLKQAVLLGLAATVSHTAVVWLIAMAGLWF-GRGWNAQTSEpWFQLVSGIVIVLIACWMLWRTWRE 112
                      78899**********************99998.89999888876889999999999999999998875 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.026
  Abhydrolase_9_N  18 GlsaaiGYglGvllawlvrrllr.........lpepsrrvrrrlrlalavvalvvllvalvl 70 
                      G+++++G+ +G++l  +++ +++         ++++ +  +r++ ++  ++++vv ++++++
       CTQ26770.1 233 GATMVLGFSVGLALTLVASGAIAalslkhatrRWPWLNDLSRKAPWFSGLLIIVVGIYMMLH 294
                      77777788888877777777776677777777777777777777777777777777777665 PP

>> SARAF  SOCE-associated regulatory factor of calcium homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.9e-05     0.088     152     209 ..      82     147 ..      61     197 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.9e-05
       SARAF 152 kkksssssasllfvvlvllviayivykaflaaeeereaeaeggrrgegggggggggg..........p 209
                 ++++s+ +++l+  ++++l+ ++++++++ +++ ++++  ++++++ ++ +++++ +          +
  CTQ26770.1  82 NAQTSEPWFQLVSGIVIVLIACWMLWRTWRETQPHTHH--DHHHEHDHHHEHDHHHEhdhhhehdhyH 147
                 55677778888899***************976665222..2222222222222222211212222210 PP

>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.3      0.69   7.7e+02     144     178 ..      46      76 ..      14      85 .. 0.50
   2 ?   12.1   0.3   0.00011      0.12      65     100 ..      85     123 ..      32     136 .. 0.81
   3 ?    2.2   1.4      0.11   1.2e+02      73      90 ..     279     296 ..     231     299 .] 0.66

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.69
  Cation_efflux 144 lgDaltslgvlvsalvillfnlksgplaDpvasll 178
                    +g + +++   ++a v+++       ++ ++a+l+
     CTQ26770.1  46 RGTLKQAVLLGLAATVSHTA----VVWLIAMAGLW 76 
                    33333333333333333332....23444444444 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00011
  Cation_efflux  65 rlevlgalvsgllllglavfllleaiqkli......kegere 100
                     +e+ + lvsg++++++a+++l+ +   +       +   + 
     CTQ26770.1  85 TSEPWFQLVSGIVIVLIACWMLWRTWRETQphthhdH---HH 123
                    5788999999999999999999999999997775442...22 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.11
  Cation_efflux  73 vsgllllglavfllleai 90 
                    +sgll+++++++++l+++
     CTQ26770.1 279 FSGLLIIVVGIYMMLHGL 296
                    566666666666666655 PP

>> CDC48_2  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00013      0.15       7      34 ..     185     212 ..     181     216 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                 CHHHHCCCTTEEE-TTEEEEECCTCCCE CS
     CDC48_2   7 maylkrqFlgrpvtkGdlvvfefkgqei 34 
                 ++++ r+F gr vt G++v f   g+ i
  CTQ26770.1 185 AQEINRRFDGRQVTTGQIVLFGLTGGLI 212
                 4589****************99888776 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.7    0.0002      0.22     625     688 ..      98     162 ..      79     184 .. 0.41

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0002
  V_ATPase_I 625 lllvkPlilklkhkkkkkkkekkkeeeee.eeeeeeeeeeeeeeeaeeeeeeeeeeeeeeeeeee 688
                 + l+   +l+++ ++++ ++++++++e++ ++e+++++e+++++e+++ +e+++++e++++++++
  CTQ26770.1  98 IVLIACWMLWRTWRETQPHTHHDHHHEHDhHHEHDHHHEHDHHHEHDHYHEHDHHHEHDHRHDHH 162
                 33333333333333333332222222211111111112222221111111111111111111111 PP

>> DUF4199  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0034       3.8       7      59 ..      65     114 ..      62     119 .. 0.68
   2 ?    2.9   1.9      0.12   1.3e+02      14      80 ..     217     288 ..     196     294 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0034
     DUF4199   7 glvwilifllilyllglh.qilstgpllgllallllllvpflvylalkkyrkkn 59 
                 ++vw++ +++++++ g++ q+    p+++l++ + ++l  + ++++ +  r+++
  CTQ26770.1  65 AVVWLIAMAGLWFGRGWNaQT--SEPWFQLVSGIVIVL--IACWMLWRTWRETQ 114
                 789999999899999998665..339**9999444444..23444444547765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.12
     DUF4199  14 fll.ilyllglh.qilstg.pllglla..llllllvpflvylalk.kyrkknlgGfisfgqafgfgflislva 80 
                  +  +l+ l+l+ + + +  ++lg+ +   l l+++ +++ l+lk + r+    + +s +  +  g+li++v+
  CTQ26770.1 217 SITvLLICLQLKkF-SLGAtMVLGFSVglALTLVASGAIAALSLKhATRRWPWLNDLSRKAPWFSGLLIIVVG 288
                 33334555555422.2222466666665444444446667777774555554455566666666666666666 PP

>> Apc15p  Apc15p protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.5    0.0029       3.3       3      69 ..     106     176 ..     104     199 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0029
      Apc15p   3 Lfrdikrnpllsknesnksnsssernkkl....nngnatn....kakernedqkksrrsgyapplsaynaieesp 69 
                 L+r+ ++ +  + ++++ ++ +++++++          ++     +++  +++  +r+ + + ++sa+ ++ e+ 
  CTQ26770.1 106 LWRTWRETQPHTHHDHHHEHDHHHEHDHHhehdH----HHehdhYHEHDHHHEHDHRHDHHHASSSAAPLVAEEW 176
                 9*****9996666666666666666665533322....2233454456666666666655555555555544443 PP

>> DUF308  Short repeat of unknown function (DUF308)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.5     0.011        13      24      72 ..      62     106 ..      48     107 .. 0.65
   2 ?    8.4   5.7    0.0023       2.6      17      72 ..     233     292 ..     218     293 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.011
      DUF308  24 lvllfGilllvsGivqiiaafaarkknrggrwlglllGilyliaGllll 72 
                 + + + +l+ ++G++      + ++ + +  w++l++Gi+ +++++++l
  CTQ26770.1  62 SHTAVVWLIAMAGLWFG----RGWNAQTSEPWFQLVSGIVIVLIACWML 106
                 33333444444444433....3456667788****************98 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0023
      DUF308  17 PvaallalvllfGilllvsGivqiiaaf.......aarkknrggrwlglllGilyliaGllll 72 
                  ++++l +++ +++ l++sG++  ++         +  + +r++ w   ++G+l +++G++++
  CTQ26770.1 233 GATMVLGFSVGLALTLVASGAIAALSLKhatrrwpWLNDLSRKAPW---FSGLLIIVVGIYMM 292
                 4567777777888888888888887555322333333333333333...9***********97 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2      0.13   1.5e+02      11      28 ..      90     107 ..      58     141 .. 0.59
   2 ?    6.9   2.5    0.0041       4.6       3      67 ..     230     298 ..     218     299 .] 0.75

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.13
                  XXXXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxx RF
  Tetraspanin  11 lfwligivllavGvwlrl 28 
                  + ++ giv++ ++ w++ 
   CTQ26770.1  90 FQLVSGIVIVLIACWMLW 107
                  334555555555555543 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0041
                  XXXXXXXXXXXXXXXXXXXX..XXXXXX..XXX.....................XXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxxxxxx..xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin   3 yllfffnllfwligivllav..Gvwlrl..khaeaalacllsesaedpailaillivvGvllfllgflG 67 
                  ++l  + +l + +g++l  v  G  + l  kha      l++ s ++p +   l+ivvG+ ++l g+ G
   CTQ26770.1 230 FSLGATMVLGFSVGLALTLVasGAIAALslKHATRRWPWLNDLSRKAPWFSGLLIIVVGIYMMLHGLSG 298
                  55555666655556555555224333336888888888888999999*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1570  (0.0875676); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                       120  (0.00669307); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 2202.30
//
Query:       CTQ26771.1  [L=114]
Description: putative alpha helix chain yaiN [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-21   76.9   4.1    1.7e-21   76.4   4.1    1.2  1  Trns_repr_metal  Metal-sensitive transcriptional repressor
     0.0069   16.7   0.2      0.012   15.9   0.2    1.4  1  Img2             Mitochondrial large subunit ribosomal protei
  ------ inclusion threshold ------
      0.042   13.9   0.5      0.064   13.3   0.5    1.3  1  MCC-bdg_PDZ      PDZ domain of MCC-2 bdg protein for Usher sy


Domain annotation for each model (and alignments):
>> Trns_repr_metal  Metal-sensitive transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   4.1   2.8e-25   1.7e-21       2      76 ..      32     110 ..      31     111 .. 0.90

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 2.8e-25
                      HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHH....HHHHHHHHHHH CS
  Trns_repr_metal   2 kkkllnrLkrieGQvrgiqrmieedryCidiltQlaAvrsalnkvglelledhlkhcva...eaiee....ekieeliellk 76 
                      kk ll+rLk+i+GQ  ++++m++ +++C +il+QlaA+r+a+n+++l++++ hl ++v+   +   e    +++e +++++k
       CTQ26771.1  32 KKMLLTRLKKIQGQSTALEKMLNREHECAEILQQLAAIRGAVNGMMLQVIQGHLTDHVVkepD---EtqreADLETVMQVIK 110
                      899********************************************************6653...2234699999999997 PP

>> Img2  Mitochondrial large subunit ribosomal protein (Img2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2     2e-06     0.012      20      61 ..      29      69 ..      22      92 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-06
        Img2 20 krggtkkltvirkieGDiaalredLrkaleelvkvnevtgki 61
                 r+++  lt ++ki+G  +al++ L++  e  +++ ++   i
  CTQ26771.1 29 VRHKKMLLTRLKKIQGQSTALEKMLNREHE-CAEILQQLAAI 69
                45688889*****************99888.54444433322 PP

>> MCC-bdg_PDZ  PDZ domain of MCC-2 bdg protein for Usher syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   1.1e-05     0.064      12      64 ..      17      69 ..      16      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
  MCC-bdg_PDZ 12 qnelLsltleerkqqseeLsldlgkaEsnatALvlALeyserlkeayevllal 64
                 qne + +++     +   L  +l+k   ++tAL   L+   ++ e+ ++l+a+
   CTQ26771.1 17 QNETVDRAMSHTVRHKKMLLTRLKKIQGQSTALEKMLNREHECAEILQQLAAI 69
                 677777777777788888999*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       991  (0.0552736); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 898.31
//
Query:       CTQ26772.1  [L=519]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-63  214.1   0.0    3.3e-63  213.4   0.0    1.4  1  EAL              EAL domain
    5.9e-41  140.2   1.7      9e-41  139.7   1.7    1.3  1  CSS-motif        CSS motif domain associated with EAL
  ------ inclusion threshold ------
      0.035   14.7   0.2      0.072   13.7   0.2    1.5  1  Complex1_LYR_1   Complex1_LYR-like
       0.13   12.3   0.3       0.13   12.3   0.3    2.0  2  TMEMspv1-c74-12  Plectrovirus spv1-c74 ORF 12 transmembrane p


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.4   0.0   7.5e-67   3.3e-63       3     237 ..     274     501 ..     272     502 .. 0.96

  Alignments for each domain:
  == domain 1  score: 213.4 bits;  conditional E-value: 7.5e-67
                 HHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHH.CHTT--EEEEEE--CHHCC-C CS
         EAL   3 alrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrla.eqldadiklsinlspaslade 100
                 ++ +al  + + ++yQP+++l++gk+ g+e l+rwq pdg  +sp+ f+plae++gl+ +l++ +++++++dl  +  +   +++++sinls ++l+++
  CTQ26772.1 274 SMLDALNSEAIQVHYQPIISLQDGKIAGAEPLARWQQPDGTFLSPDIFIPLAEQTGLITQLTEDIVRKIFADLGPWLrQ--RPEVHISINLSVDDLRSP 370
                 567899999*******************************************************************977..99**************** PP

                 CHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHH CS
         EAL 101 efleelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalia 199
                 +++  l + l++ g+++++++leite+ +  + e++   v+a+++++G ri++ddfgtgysslsyl++l++d++K+d+s+++ l    e + l+  +i+
  CTQ26772.1 371 TLPTLLHNQLQHWGIAAEQIILEITERGF-VDPETTM-PVIAHYHQAGHRISIDDFGTGYSSLSYLQKLDVDTLKIDKSFVDTL----EYRPLTPHIIE 463
                 ***************************98.5777776.9******************************************998....599******** PP

                 HHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT-- CS
         EAL 200 lakelgikvvaegVeteeqlealrelgcdlvQGyllsk 237
                 +ak+l++ +vaegVete+q ++lr+ g+ ++QG+l+sk
  CTQ26772.1 464 MAKALNLATVAEGVETESQRDWLRQHGVQYAQGWLYSK 501
                 ************************************98 PP

>> CSS-motif  CSS motif domain associated with EAL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   1.7     2e-44     9e-41       2     209 .]      38     243 ..      37     243 .. 0.98

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 2e-44
   CSS-motif   2 qqqldalaeralerledvldqadqaldelqplagrpCseahlaaLrrivafspyvrdiglvkdgrlyCSSlwGeldlplpllppdltsrdgvrlwllrg 100
                 +++ld++++r++ r+ +v+dqa++al+e+++ + ++Cs++hl++Lrri+++++y+++++ ++d +++CSSl+ ++   ++ +ppd +++dg+r+wl++ 
  CTQ26772.1  38 YRELDDYSNRIVVRTLQVADQAREALREADAHTAASCSPEHLLTLRRIAYTHRYIQEVLWLRDSVPQCSSLEDHSV-AVTFPPPDHIAPDGYRTWLTSI 135
                 689********************************************************************99998.********************** PP

   CSS-motif 101 tplvpdrpalvlrrgnyavvispgvfidgqyl.pelllavsssdgeqlalvvgpaallldgrvlslaeliasearssgalyvrakserypltvvvyapp 198
                 ++l+ d+++++++ ++++v+i+p +fid+     e +++++ +  +q +++++++   +++++ ++++++ +  + ++++y + ++++ +  +v+++++
  CTQ26772.1 136 NDLGLDHQMTAMGSRQHMVMIDPVSFIDVVPAsEEKIHTMLFGLDHQKMVISSQPL--PAKVWQRIKDPHVDMLTLDNTVYRIQRIPELGSGIVTWSST 232
                 *********************************************9**99999987..999************************************** PP

   CSS-motif 199 asllarwrqll 209
                  +l++r+rq+l
  CTQ26772.1 233 LPLQQRIRQQL 243
                 ********986 PP

>> Complex1_LYR_1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   1.6e-05     0.072       1      77 [.      32     102 ..      32     114 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.6e-05
  Complex1_LYR_1   1 reklrlyrallkaarrfPlrsrreivaeevraafrhplndslttkevdyklllgweraaaiqtyaenmywflsrdev 77 
                     + k+++yr+l   ++r+  r  +  va++ r a+r    d+ t ++     ll   r a  + y +++ w+   d v
      CTQ26772.1  32 QAKMQFYRELDDYSNRIVVRTLQ--VADQAREALR--EADAHTAASCSPEHLLTLRRIAYTHRYIQEVLWLR--DSV 102
                     57899****************99..**********..78999****99999*******************87..554 PP

>> TMEMspv1-c74-12  Plectrovirus spv1-c74 ORF 12 transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   2.9e-05      0.13       5      33 ..       6      34 ..       4      38 .. 0.89
   2 ?   -2.7   0.1       1.4   6.2e+03       3       8 ..     130     135 ..     129     136 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.9e-05
  TMEMspv1-c74-12  5 LTtiFSvvivLgiFlyiGLsiyqKikqir 33
                     L  +F  v++L+i l i Lsi+q  +q +
       CTQ26772.1  6 LMALFTGVLILAIILPISLSIWQAARQAK 34
                     5568999*******************976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.4
  TMEMspv1-c74-12   3 tWLTti 8  
                      tWLT i
       CTQ26772.1 130 TWLTSI 135
                      8***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3758.93
//
Query:       CTQ26773.1  [L=369]
Description: fused maltose transport subunit, ATP-binding component of ABC superfamily; regulatory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-34  116.8   0.0    1.5e-33  116.2   0.0    1.3  1  ABC_tran         ABC transporter
    1.8e-11   44.7   0.0    5.6e-11   43.1   0.0    2.0  1  OB_MalK          MalK OB fold domain
    5.2e-05   23.2   0.0      0.007   16.2   0.0    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    9.3e-05   22.4   0.0     0.0002   21.3   0.0    1.5  1  RsgA_GTPase      RsgA GTPase
     0.0003   20.9   0.0     0.0017   18.5   0.0    2.3  2  TOBE_2           TOBE domain
    0.00086   18.8   0.3      0.015   14.8   0.1    2.5  2  SMC_N            RecF/RecN/SMC N terminal domain
     0.0014   18.3   0.0     0.0042   16.8   0.0    1.7  1  AAA_29           P-loop containing region of AAA domain
     0.0027   17.9   0.0     0.0064   16.7   0.0    1.7  1  AAA_33           AAA domain
     0.0031   17.9   0.0     0.0072   16.7   0.0    1.7  1  AAA_16           AAA ATPase domain
     0.0033   17.7   0.1      0.009   16.3   0.1    1.8  1  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.011   16.3   0.0      0.018   15.5   0.0    1.3  1  AAA_23           AAA domain
      0.017   14.6   0.1        1.9    7.9   0.0    2.2  2  PhoH             PhoH-like protein
      0.021   13.5   0.1       0.54    8.9   0.0    2.0  2  PEPCK_ATP        Phosphoenolpyruvate carboxykinase
      0.021   15.4   0.1       0.12   13.0   0.0    2.3  2  CysA_C_terminal  CysA C-terminal regulatory domain
      0.025   14.3   0.0       0.04   13.6   0.0    1.3  1  AAA_15           AAA ATPase domain
      0.026   14.8   0.0       0.05   13.8   0.0    1.5  1  AAA_28           AAA domain
       0.05   13.2   0.1       0.11   12.0   0.0    1.6  2  AAA_25           AAA domain
      0.063   13.0   0.0       0.13   12.0   0.0    1.7  1  AAA_30           AAA domain
      0.065   13.2   0.0       0.11   12.4   0.0    1.3  1  Rad17            Rad17 P-loop domain
       0.08   13.4   0.0       0.19   12.2   0.0    1.6  1  AAA              ATPase family associated with various cellul
       0.15   12.0   0.0       0.25   11.2   0.0    1.3  1  ATPase_2         ATPase domain predominantly from Archaea
       0.16   11.9   0.0       0.41   10.5   0.0    1.7  1  NACHT            NACHT domain
       0.18   11.4   0.0       0.62    9.6   0.0    1.9  3  AAA_27           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0     2e-36   1.5e-33       1     136 [.      19     161 ..      19     162 .. 0.96

  Alignments for each domain:
  == domain 1  score: 116.2 bits;  conditional E-value: 2e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeie 86 
                 l++v+l+++ ge  ++vG++G+GKStLl+++agl++  eGe+l+ ++ +++     +r+ +++++q   l p++tv+en             e ++++e
  CTQ26773.1  19 LHQVNLDIEDGEFAVFVGPSGCGKSTLLRMIAGLEEVSEGEVLIGDEVMND--VVPARRGVAMVFQSYALYPHMTVAENmgyglkvnkvpktEIRRQVE 115
                 789***************************************999888888..999**********************************9999999** PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  ++++l+l++l d++     ++LSgGq+qrva+ ra++++p+++++DEp 
  CTQ26773.1 116 MVAKTLQLSHLLDRKP----KQLSGGQRQRVAIGRAIVRNPRVFMFDEPL 161
                 **********999998....*****************************7 PP

>> OB_MalK  MalK OB fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   7.2e-14   5.6e-11       1      53 []     235     288 ..     235     288 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 7.2e-14
     OB_MalK   1 GSPaMNflpatveedg....vlvegggvtlplpeeqklalklyagkevilGiRPEhi 53 
                 GSP+MNflpa v++ +    ++ ++++ +l+l+ +    + l+ g  v+lGiRPEh+
  CTQ26773.1 235 GSPKMNFLPAIVSDWQperlTVTLAQDHQLALNIAT---QPLKPGAAVTLGIRPEHL 288
                 9************88888886666777777777776...99***************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     9e-06     0.007       1      22 [.      31      52 ..      31      75 .. 0.84
   2 ?    5.0   0.0     0.023        18     225     275 ..     122     169 ..      97     196 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                ++v++Gp g+GKS+LL+ + +l
  CTQ26773.1 31 FAVFVGPSGCGKSTLLRMIAGL 52
                78*****************998 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.023
      AAA_21 225 engdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkll 275
                   ++  ++ + +lS G+++  a+  a+ r +   +++ +DEp ++L+ +l 
  CTQ26773.1 122 QLSHLLDRKPKQLSGGQRQRVAIGRAIVRNP---RVFMFDEPLSNLDAELR 169
                 5555566667788999999988888888888...************99876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.6e-07    0.0002      92     130 ..      21      60 ..       4      64 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.6e-07
                  HHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  92 elkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  +++  ++d +++v+vG+SG GKStL+ ++++ +e++ gev
   CTQ26773.1  21 QVNLDIEDgEFAVFVGPSGCGKSTLLRMIAGLEEVSEGEV 60 
                  55556666699******************99877776665 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0066       5.2      36      73 ..     255     288 ..     252     289 .. 0.71
   2 !   18.5   0.0   2.2e-06    0.0017       1      76 []     281     352 ..     281     352 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0066
      TOBE_2  36 vvelaggqlvvvrqpnadrdsalapGdtVelswdpdda 73 
                 +v+la+  + ++   +++   +l+pG +V+l+++p+++
  CTQ26773.1 255 TVTLAQDHQ-LALNIATQ---PLKPGAAVTLGIRPEHL 288
                 566666655.44444455...899***********996 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 2.2e-06
      TOBE_2   1 laiRPEklrlaaagg.anglsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpddavvl 76 
                 l+iRPE+l+   + + ++ ++ + e ve lG+ t ++ ++ g   v+v  p      +++p +++ l++d + ++v+
  CTQ26773.1 281 LGIRPEHLTP--EVAtGTVVEFQCEVVERLGNNTYLFGQCYGHDNVKVLLPGDV---HFRPWQKIKLAFDERFCMVF 352
                 79********..344357889999999*************************99...***************99998 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.9e-05     0.015      24     210 ..      29     206 ..      10     214 .. 0.58
   2 ?   -2.5   0.0       3.5   2.8e+03      24      44 ..     225     245 ..     216     246 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-05
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEE.SSSSSSCEEEEEEEETTSEEEEEETTEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaeveitfdnedkk.lkiekeevsisrrvkrkgeseykingkevtk 120
                  +f + vGp G+GKs ll  i    G ++      ++ + li     +     +  v+++f+        + +e++    +v +  ++e++ + + v k
  CTQ26773.1  29 GEFAVFVGPSGCGKSTLLRMI---AGLEEV-----SEGEVLIGDeVMNDVVPARRGVAMVFQSYALYpHMTVAENMGYGLKVNKVPKTEIRRQVEMVAK 119
                 369999************999...565444.....4444444442122222233345666655554422233444555555555555555544444444 PP

                 .HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT...SEEEEE-SSHHHCCC-SCEEE CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 .kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn...aQfivislreemlekadklvg 210
                   ++s+ll +   ++++LSgG+++ va+    Ai   +   ++++De  ++LD++ +  +   + + +++   + + v+  + e ++ adk+v 
  CTQ26773.1 120 tLQLSHLLDR---KPKQLSGGQRQRVAIG--RAIV--RNPRVFMFDEPLSNLDAELRVDMRLHIARLHQElktTMVYVTHDQVEAMTLADKIVV 206
                 3567777766...689*******987765..3443..44557899**99999998777666666555554110333343334455555666665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.5
                 SSEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAi 44 
                 +  +++ G  GS K n+l Ai
  CTQ26773.1 225 PVNKFVAGFIGSPKMNFLPAI 245
                 5567899999********998 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.4e-06    0.0042      12      39 ..      19      46 ..      15      51 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.4e-06
      AAA_29 12 fdghtieidlkg.atlltGpsGsGKSTll 39
                +++  ++i+  g + +++GpsG GKSTll
  CTQ26773.1 19 LHQVNLDIED-GeFAVFVGPSGCGKSTLL 46
                5556666764.359**************8 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.2e-06    0.0064       3      40 ..      33      73 ..      32     199 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.2e-06
      AAA_33  3 llvGlpGsGKstlaerllkklg...avllssdtlrrrlfgt 40
                ++vG++G+GKstl++ ++  +    +++l  d++++ +++ 
  CTQ26773.1 33 VFVGPSGCGKSTLLRMIAGLEEvseGEVLIGDEVMNDVVPA 73
                79*************98655446679999889855555542 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   9.2e-06    0.0072      24      45 ..      29      50 ..      16     202 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9.2e-06
      AAA_16 24 pelvllsGesGvGKsslvrell 45
                +e  +++G+sG+GKs+l+r+++
  CTQ26773.1 29 GEFAVFVGPSGCGKSTLLRMIA 50
                478999*************998 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.2e-05     0.009       4      29 ..      28      53 ..      25     160 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.2e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleql 29
                +  + v +G+sG+GK+tllr+++   
  CTQ26773.1 28 DGEFAVFVGPSGCGKSTLLRMIAGLE 53
                567899**************998764 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   2.4e-05     0.018      12      39 ..      21      49 ..       6      51 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.4e-05
      AAA_23 12 dqeidF.skgltlItGpNGaGKTTildAi 39
                 +++d  +  + +++Gp G+GK+T+l+ i
  CTQ26773.1 21 QVNLDIeDGEFAVFVGPSGCGKSTLLRMI 49
                4556664446789*************987 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0024       1.9      16      49 ..      26      60 ..      15      62 .. 0.83
   2 ?    4.4   0.1     0.029        22      49     109 ..     144     208 ..     133     213 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0024
                HHH-SEEEEE--TTSST.THHHHHHHHHHHHTTS- CS
        PhoH 16 lkkndivfaiGpaGtGK.tylavalavealkkkkv 49
                +++ ++ + +Gp+G+GK t+l + +++e +++++v
  CTQ26773.1 26 IEDGEFAVFVGPSGCGKsTLLRMIAGLEEVSEGEV 60
                567788999********678899999999998876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.029
                 -SEEEEEE-S-.-TT----SS---------TTTHHHHHHHTTTS...-TTCHHHHHHTTSEEEEE CS
        PhoH  49 vkriiltrpav.eageelGflpgdleekvdpylrplydaLkdll...gaekvekllekgkievap 109
                 + r i+  p v + +e l  l+ +l+  ++  ++ l+++Lk+++    +++ve ++ ++ki v++
  CTQ26773.1 144 IGRAIVRNPRVfMFDEPLSNLDAELRVDMRLHIARLHQELKTTMvyvTHDQVEAMTLADKIVVMN 208
                 55777788888455***************************998676789999999999998886 PP

>> PEPCK_ATP  Phosphoenolpyruvate carboxykinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0007      0.54     203     237 ..      22      64 ..       6      73 .. 0.79
   2 ?    2.5   0.0      0.06        47      83     145 ..     150     213 ..     139     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0007
                 EEE-T.TS-EEEEEE-TTSSHHHHH........-BTTB-EEES CS
   PEPCK_ATP 203 anvgekkgdvalfFGLSGtGKTtLs........adperkligd 237
                  n + ++g+ a+f G SG GK tL           + ++ligd
  CTQ26773.1  22 VNLDIEDGEFAVFVGPSGCGKSTLLrmiagleeVSEGEVLIGD 64 
                 68888999***************97666666655566667766 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.06
                 HTS-EEEEEE.EE-SSTTT-EEEEEEES-HHHHHHHHHHSBGGS-S-TTT---SEEEEEETT-- CS
   PEPCK_ATP  83 kekelyvvda.fagadpkyrlkvrviterawqalfvknllirpteeeleefepdftilnapefk 145
                 ++ +++++d      d++ r+++r+ + r  q+l ++ ++++ ++ e  +  ++ +++n ++++
  CTQ26773.1 150 RNPRVFMFDEpLSNLDAELRVDMRLHIARLHQELKTTMVYVTHDQVEAMTLADKIVVMNYGKVE 213
                 55688999872456899*************************999999999********99976 PP

>> CysA_C_terminal  CysA C-terminal regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       4.7   3.7e+03       7      18 ..      55      66 ..      54      78 .. 0.76
   2 ?   13.0   0.0   0.00015      0.12      17      41 ..     262     288 ..     255     289 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4.7
  CysA_C_terminal  7 vedGklriGgla 18
                     v++G + iG+  
       CTQ26773.1 55 VSEGEVLIGDEV 66
                     899*****9965 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00015
  CysA_C_terminal  17 lalpvP..elagadgqevvayVRPhDl 41 
                      ++l++    ++   g++v++++RP++l
       CTQ26773.1 262 HQLALNiaTQPLKPGAAVTLGIRPEHL 288
                      55555544777779***********99 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.2e-05      0.04      16      44 ..      21      50 ..      18      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.2e-05
      AAA_15 16 dveidlsee.ltvliGkNnsGKSsileald 44
                +v +d+++  + v++G+ ++GKS++l+++ 
  CTQ26773.1 21 QVNLDIEDGeFAVFVGPSGCGKSTLLRMIA 50
                4667777768*****************995 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.4e-05      0.05       3      35 ..      33      71 ..      31      84 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.4e-05
      AAA_28  3 vitGgestGKTtlleaLa..ar...gypvv.pEaareil 35
                v++G++++GK+tll+ +a  ++   g + +  E++ +++
  CTQ26773.1 33 VFVGPSGCGKSTLLRMIAglEEvseGEVLIgDEVMNDVV 71
                89*************999662245577777788888876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00015      0.11      30      51 ..      26      47 ..      20      80 .. 0.78
   2 ?   -3.7   0.1       9.6   7.5e+03      89     108 ..     173     192 ..     165     204 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
      AAA_25 30 lpagelallaGapgtGKttlal 51
                +  ge+a+++G++g+GK+tl+ 
  CTQ26773.1 26 IEDGEFAVFVGPSGCGKSTLLR 47
                5789***************985 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 9.6
      AAA_25  89 Rlravgealrddarllvldl 108
                 Rl+ ++ +++++ +   ++ 
  CTQ26773.1 173 RLHIARLHQELKTTMVYVTH 192
                 55555555544444444443 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00017      0.13      19      49 ..      30      60 ..      22     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00017
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrv 49
                 +av +Gp G GK+t+l+ ++ + e ++g+v
  CTQ26773.1 30 EFAVFVGPSGCGKSTLLRMIAGLEEVSEGEV 60
                4899****************99988885444 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014      0.11      48      66 ..      32      50 ..      16      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
       Rad17 48 LLisGPsGCgkstvvkvLs 66
                 +  GPsGCgkst +++++
  CTQ26773.1 32 AVFVGPSGCGKSTLLRMIA 50
                5678***********9987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00024      0.19       2      20 ..      33      51 ..      32      84 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00024
                EEESSTTSSHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavak 20
                +++Gp G+GK++l + +a 
  CTQ26773.1 33 VFVGPSGCGKSTLLRMIAG 51
                689**************96 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00032      0.25      19      44 ..      28      53 ..      20      66 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00032
    ATPase_2 19 pneiyfiYGpegsGKtaLlkeiienl 44
                  e+ +  Gp g+GK++Ll+ i+   
  CTQ26773.1 28 DGEFAVFVGPSGCGKSTLLRMIAGLE 53
                56677888************987655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00053      0.41       4      21 ..      33      50 ..      30      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00053
                EEEC-TTTCHHHHHHHHH CS
       NACHT  4 ilqGeaGsGKTtLlqkla 21
                +  G++G+GK+tLl+ +a
  CTQ26773.1 33 VFVGPSGCGKSTLLRMIA 50
                678************997 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00079      0.62       9      47 ..      11      50 ..       4      53 .. 0.85
   2 ?   -3.0   0.0       5.9   4.6e+03      57      94 ..     151     186 ..     149     204 .. 0.62
   3 ?   -2.9   0.0       5.3   4.1e+03      61      74 ..     350     363 ..     345     367 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00079
      AAA_27  9 eryGk.ftdrsldfsaeeadlhliyGpNEAGKstalrAis 47
                +r+G+ +t ++++++ e+ ++ + +Gp   GKst+lr i 
  CTQ26773.1 11 KRFGStVTLHQVNLDIEDGEFAVFVGPSGCGKSTLLRMIA 50
                67885367889999999*******************9876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.9
      AAA_27  57 tkdnflhdakkLrigavleeadgeelefaRrkgrkktl 94 
                  ++ f++d+    + a l+   + +l++aR  ++ kt 
  CTQ26773.1 151 NPRVFMFDEPLSNLDAELR--VDMRLHIARLHQELKTT 186
                 6677888888888888883..33357888876664443 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 5.3
      AAA_27  61 flhdakkLrigavl 74 
                  ++d+++Lri+a +
  CTQ26773.1 350 MVFDENDLRISADI 363
                 5899******9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 2754.92
//
Query:       CTQ26774.1  [L=47]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.096   12.6   0.1      0.096   12.6   0.1    1.0  1  DUF5380   Family of unknown function (DUF5380)


Domain annotation for each model (and alignments):
>> DUF5380  Family of unknown function (DUF5380)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   5.3e-06     0.096      36      74 ..       2      42 ..       1      47 [] 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.3e-06
     DUF5380 36 vpkiaeyetfksdksanflsdGaGhv..vfrqfrrlrlsdv 74
                ++++a y +f  d+s+ + +  + hv  v rqf  + +s+ 
  CTQ26774.1  2 ITQLAAYGSFINDQSVAYNKSESEHVfhVTRQFEMIYFSNW 42
                5789*****************999996678***99988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 404.37
//
Query:       CTQ26775.1  [L=410]
Description: Cyclodextrin-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-50  171.3   6.4    4.9e-50  170.9   6.4    1.1  1  SBP_bac_8  Bacterial extracellular solute-binding protein
    4.7e-33  115.5  13.1    6.5e-33  115.0  13.1    1.2  1  SBP_bac_1  Bacterial extracellular solute-binding protein
     0.0029   17.0   0.1        1.5    8.2   0.0    2.3  2  SBP_bac_6  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.9   6.4   8.3e-54   4.9e-50       2     280 ..      45     347 ..      44     349 .. 0.84

  Alignments for each domain:
  == domain 1  score: 170.9 bits;  conditional E-value: 8.3e-54
                 HHHHHHHH-TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GG.GSTTHHH-HH.HHHTT--TS.----EEEEEEE-EEE CS
   SBP_bac_8   2 lakefekktgvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladls.dldnlddltd.alaavgydgklygvPyasetpyvli 98 
                 ++++fek+++vkvn++++++++  +kl+ + +ag +pd  v+++++d+l+ ++++gll +ls d  + d +t+  ++a+ +d +lyg+P a+et  vli
  CTQ26775.1  45 AVSDFEKQYNVKVNLQEMPYAQQLEKLRLDGPAGIGPD--VLVIPNDQLGGAVVQGLLSPLSvDQAKQDAFTPaSINAFRMDNALYGIPKAVET-LVLI 140
                 689*********************************96..678889****************766666666555*******************8.8*** PP

                 EEHHHHHHS.---BHHHHHHHHHHH..HHH-SEGG---G.GGGGGTHH...........ETTEE---H...HHH.HHHHHHHHHHHHTT-EE.....-S CS
   SBP_bac_8  99 ynkdllekaedpktwdellaaakkl..kgkfglpdpasg.wlqaalla...........kdgksldddg.gkdglkealellkklkdngkty.....dt 177
                 ynkdl++k  + ++++++l++ k+   ++k+gl +  ++ ++ ++++            ++g ++ ++g + +g +ea+++lkk+++ ++++     d+
  CTQ26775.1 141 YNKDLIDK--PLDSLQAWLDYSKTQreQNKYGLLAKFDQiYYSWGAIGpmggyifakndSGGFNPQQVGlNTPGAVEAVTFLKKFYAEKVFPagilgDN 237
                 *******7..77777777777666544599999766665544555554422444444433444444444666666**************9889999755 PP

                 ...--SSTTTTTSBSEEEE-TTHHHHHH-TTTSEEEE.--......S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S-T CS
   SBP_bac_8 178 g.adavsefanGevaftingswdiaaaqkagkklgai.vp......kqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnksa 268
                 g +++ s+f+++++a++ing+w+++ +++ag ++g++ +p      +++sf+g+kg++v++ +k+++l A++F++++ +p++ +a + +tg ip++k++
  CTQ26775.1 238 GlNAIDSLFTEKKAAAVINGPWAFQPYEAAGINYGVApLPtlpdgkPMSSFLGVKGYVVSTWSKDKAL-AQQFIEFINQPQYVKARYVATGEIPPLKAM 335
                 6578888******************************545776765567******************9.****************************** PP

                 TTHHHHHH-HHH CS
   SBP_bac_8 269 alspevkkdpal 280
                  ++p +k+d+++
  CTQ26775.1 336 IDDPVIKNDQKA 347
                 ******999765 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0  13.1   1.1e-36   6.5e-33       4     312 ..      36     317 ..      33     320 .. 0.89

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 1.1e-36
                 HHHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHH CS
   SBP_bac_1   4 ltegaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkil 102
                 +++ a+++ +v  +fek  +++kV+++  ++ +  +kl+l+  aG gp Dv  + nd+++  + +gll pl+ + +++               ++p+ +
  CTQ26775.1  36 IKKSAGIKTAV-SDFEK-QYNVKVNLQEMPYAQQLEKLRLDGPAGIGP-DVLVIPNDQLGGAVVQGLLSPLSVDQAKQD-------------AFTPASI 118
                 55667888899.99***.67****************************.*****************************4.............3889999 PP

                 CE.EE...ES.EEEE.EEEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCT.......HCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHH CS
   SBP_bac_1 103 ds.kv...ly.vPly.aargliYNkdlfekagldppwtWdelveaakklkekgkkp.......iggarggsasgtayyfalalakslggkvfdkdgggl 188
                 ++ +    ly +P   ++ +liYNkdl +k+  d   + + ++++ k  +e++k++       i+ ++g+ +   +y+fa + +++++++ +     gl
  CTQ26775.1 119 NAfRMdnaLYgIPKAvETLVLIYNKDLIDKPL-D---SLQAWLDYSKTQREQNKYGllakfdqIYYSWGAIGPMGGYIFAKNDSGGFNPQQV-----GL 208
                 976668*********55************644.3...9******************999999999999999999999998665555554444.....9* PP

                 CSHHHHSHHHHHHHHHHHHHHHHHHHTTEEECSSH.HHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE..E CS
   SBP_bac_1 189 dnpegvtaatylvklyavanltkelkgkgaenkdg.aaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi..l 284
                 ++p++v+a+t+l+k y      ++ +++g ++ +g +a ++lf++ +aa+ i+g+wa              +++e +++++gvaplP+ ++gkp++  l
  CTQ26775.1 209 NTPGAVEAVTFLKKFY-----AEKVFPAGILGDNGlNAIDSLFTEKKAAAVINGPWA-------------FQPYEAAGINYGVAPLPTLPDGKPMSsfL 289
                 ****************.....45556666665555277789999*************.............***************************** PP

                 EEEEEEEBTTCSTHHHHHHHHHHHTSHH CS
   SBP_bac_1 285 gayglaipkgsknpeaAkkFldfllspe 312
                 g+ g+++++ sk+++ A++F++f+  p+
  CTQ26775.1 290 GVKGYVVSTWSKDKALAQQFIEFINQPQ 317
                 ***********************98876 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0   0.00083         5       4      70 ..      81     148 ..      80     153 .. 0.72
   2 !    8.2   0.0   0.00025       1.5     183     231 ..     295     343 ..     286     350 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00083
   SBP_bac_6   4 pdlilsfdkdflekfieeglfqpld..panlpnvnkdfaeeglkdpdgkyy..pygvgplvlavnkdrlkg 70 
                 pd+++   +d l+ ++ +gl+ pl   +a+++ +++    ++    d+  y  p +v++lvl++nkd +++
  CTQ26775.1  81 PDVLV-IPNDQLGGAVVQGLLSPLSvdQAKQDAFTPAS--INAFRMDNALYgiPKAVETLVLIYNKDLIDK 148
                 79999.777888888999*****995544555555433..3333333344446**************9865 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00025
   SBP_bac_6 183 lvkkg.kkkelakafidfllspevqailakaggvfPvvtnpavlnelpeg 231
                 +v +  k k+la++fi+f+ +p++ ++   a+g++P+ +++  +++++++
  CTQ26775.1 295 VVSTWsKDKALAQQFIEFINQPQYVKARYVATGEIPP-LKAMIDDPVIKN 343
                 4555567899*************98888888888999.766666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.19s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3313.99
//
Query:       CTQ26776.1  [L=435]
Description: putative arabinogalactan oligomer transport system permease protein GanP [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-22   78.4  23.7    5.4e-22   78.4  23.7    3.1  3  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.1      0.05     9e+02     130     155 ..      52      79 ..      21     115 .. 0.51
   2 ?   -6.9  12.0         1   1.8e+04      27      61 ..     138     214 ..     117     219 .. 0.66
   3 !   78.4  23.7     3e-26   5.4e-22       4     175 ..     219     418 ..     216     427 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.05
  BPD_transp_1 130 flgswpGlgtllleailgydyseis......n 155
                   fl    G+ + +l+  l+  y+++        
    CTQ26776.1  52 FL----GIFYDFLREGLWGLYTLGEevprdnS 79 
                   22....24444444444444444445555541 PP

  == domain 2  score: -6.9 bits;  conditional E-value: 1
  BPD_transp_1  27 llslPsfvlaillvlvf...........................................vilsilghlilpviilll 61 
                   l+ +P f+l++++v +f                                            +l++l++++ + +++++
    CTQ26776.1 138 LMITPGFILLVFVV-IFpilfgfaiaftnynlyhtppaklvdwvglknfiniftlsiwrsTFLDVLQWTVVWTLLATT 214
                   45566666444433.445566667888888888888887777777777666666666666666666666666555555 PP

  == domain 3  score: 78.4 bits;  conditional E-value: 3e-26
  BPD_transp_1   4 lGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf....................vilsilghlilpviillllsaapyvrlirraalr 77 
                   +G+l+a   +++  +++ l+r+++i+++++P fv ++++  +f                    ++l++  ++ +++i++ ++  +p+v+ ++ ++l+
    CTQ26776.1 219 VGVLLAilvNQKDLRFKPLIRTIFILPWAVPGFVTILVFAGMFndsfgvinnailsffgispkAWLTDPFWTKTALIMMQTWLGFPFVFAMTTGVLQ 315
                   56666666669999********************999999999****************************************************** PP

  BPD_transp_1  78 slpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG......lgtllleailgydyseisnggvlalviavlll 168
                   ++p+dl+eaa+++Gas ++++r+++lP++l  i++ +i + +++++++ +++++ ++++       g + + ++++y +++ s   +++++ +++ll
    CTQ26776.1 316 AIPDDLYEAATMDGASAFTRLRTITLPLVLYAIAPIIITQYTFNFNNFNIIYLFNNGGPavagsnAGGTDILVSWIYKLTMSS-SQYAIAATITILL 411
                   ***************************************************99998877************************.6666666666666 PP

  BPD_transp_1 169 nlvadil 175
                   ++++  l
    CTQ26776.1 412 SIFVVGL 418
                   6666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3151.16
//
Query:       CTQ26777.1  [L=283]
Description: putative arabinogalactan oligomer transport system permease protein GanQ [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-19   70.2  14.0    1.9e-19   70.2  14.0    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   2.8      0.03   5.5e+02      14      68 ..      11     100 ..       1     105 [. 0.55
   2 !   70.2  14.0     1e-23   1.9e-19      10     183 ..     102     276 ..      93     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.03
  BPD_transp_1  14 kkldkllrpliivllslPsfvlaillvlvf......................................vilsilghlilpviillllsaapyv 68 
                   k+++  l++l+ +l s+   v++ +lv+ +                                      +++s   +  ++v++l+ +s+++y+
    CTQ26777.1  11 KWIRLSLTWLVVILVSV---VIIYPLVWTVgaslnagnsllstsiipenvsfqhyadlfngnvnyltwYWNSMKISFLTMVLTLISVSFTAYA 100
                   55555555555544433...3333333333466777777777777777888888888777776655544443333444445555555555554 PP

  == domain 2  score: 70.2 bits;  conditional E-value: 1e-23
  BPD_transp_1  10 lnrnkkldkllrpliivllslPsfv..laillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlP 104
                    ++++k+++  + l+ +l+++P f   +ai++   ++ l +l ++ l+++++++ +++p+++++++++l+++pkdl e ar++Gas ++if  +++P
    CTQ26777.1 102 SRFRFKGRQNGLMLFLLLQMIPQFSalIAIFV---LSQLLGLINSHLALVLIYVGGMIPMNTWLMKGYLDAIPKDLDESARMDGASSFRIFIEIIMP 195
                   6778888888899999********94344444...48889999999*************************************************** PP

  BPD_transp_1 105 nalppiitglilafggllggavlleflgswpG...lgtllleailgydyseis...nggvlalviavlllnlvadilqrlldprv 183
                   ++ p ++  ++++f+g lg+++l ++++  p    l   l +   +++         ++++ +v++ +++ +++ +lq+++   +
    CTQ26777.1 196 LSRPILAVVALFSFTGPLGDFILSSTILRTPDkytLPIGLYNLVAQKM----GasyTTYAAGAVLIAVPVAILYLALQKYFVSGL 276
                   ****************************99965442222223333333....244448899999999999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2058.53
//
Query:       CTQ26778.1  [L=400]
Description: putative galactosidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.1e-125  416.9   1.2   5.9e-125  416.8   1.2    1.0  1  Glyco_hydro_53  Glycosyl hydrolase family 53
    0.00013   21.5   0.0     0.0003   20.3   0.0    1.6  1  Cellulase       Cellulase (glycosyl hydrolase family 5)
     0.0037   16.8   0.2       0.01   15.4   0.1    1.7  2  Glyco_hydro_cc  Glycosyl hydrolase catalytic core


Domain annotation for each model (and alignments):
>> Glyco_hydro_53  Glycosyl hydrolase family 53
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.8   1.2  9.8e-129  5.9e-125       1     340 []      40     399 ..      40     399 .. 0.98

  Alignments for each domain:
  == domain 1  score: 416.8 bits;  conditional E-value: 9.8e-129
  Glyco_hydro_53   1 ikGaDisslveleeagvsfknengktqdllkilkdagvnsvRlrvwndpadenkngelegvndldkaikiakrakaaGmkvlldfHYSDtwaDPa 95 
                     ikGaDis l+  e+ g++f+++n +++d + ilk++gvn+vRlr+w+dp+++ ++++++g+ndl +++++akraka+Gmk+lldfHYSD+w+DP+
      CTQ26778.1  40 IKGADISTLLDAEKHGATFYDQNNQRKDPIAILKENGVNYVRLRLWVDPQSASGEDYGGGNNDLATTLALAKRAKAQGMKLLLDFHYSDFWTDPG 134
                     79********************************************************************************************* PP

  Glyco_hydro_53  96 kQkkPkaWasldteelkkavydyTkdvlkklkeagvlpelVqvGNEinsgllwsegk.....kenweklakllnsgikavke...vstnikvviH 182
                     kQ kPkaW++ld+ +lk+a+ dyT d+++ +k+agvlp++Vq+GNEin g+lw+egk       ++++la lln++i + ke   + +++k+++H
      CTQ26778.1 135 KQFKPKAWEKLDYPQLKTAIHDYTRDTIARFKQAGVLPDMVQIGNEINGGILWPEGKswgqgGGEFDRLAGLLNAAIAGLKEnlrQGEQVKIMLH 229
                     *********************************************************99999999*****************999999******* PP

  Glyco_hydro_53 183 langedaaskkaifkklskagvdfDvigvsYYpfwsstleklksnlkdlasrygkevivvEtsypytlddgdetgnlapkks.elksipatsqgq 276
                     la+g+++ +++++f+++ k+ v +Dvig+s Y +w++ +++lk n++d+ +ry+k+vivvE +y+ytl++ d+++n  + k+ +  ++pa++qgq
      CTQ26778.1 230 LAEGTKNDTFRWWFDEIDKRHVPYDVIGLSMYTYWNGPISALKANMDDISKRYNKDVIVVEAAYAYTLANCDNAENSFQAKEeKDGGYPASVQGQ 324
                     ****************************************************************************9998887899********* PP

  Glyco_hydro_53 277 atmlrdlielvkavtdskglGvfYWEpawvskg.............dkalkwkkgssvenqalfdrngkalpslkvf 340
                     +++++dl+++v +v+d++g G+fYWEp+w+++              +   +wk+g++ enqalfd +gk+lps+kvf
      CTQ26778.1 325 YNYIHDLMQAVVDVPDQRGKGIFYWEPTWIAVPgntwatpagmkyiH--DEWKEGNARENQALFDCQGKVLPSVKVF 399
                     *******************************999********99552..58************************98 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     5e-08    0.0003      19     116 ..      61     165 ..      41     214 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 5e-08
                 CGGSHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS............TTTCSSSSTTTTHHHHHHHH CS
   Cellulase  19 npyttkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHse............egwltkadgnssedtaeeff 105
                 ++ + k+ i+ +k++g+n vRl + ++   ++++dy  + n l+   ++ k ak++g++ +ld H              ++w  ++  +++ +ta   +
  CTQ26778.1  61 QNNQRKDPIAILKENGVNYVRLRLWVDPQSASGEDYGGGNNDLATTLALAKRAKAQGMKLLLDFHYSdfwtdpgkqfkpKAW--EKLDYPQLKTA---I 154
                 3347899999**************99777778899989****************************9333333333333222..22222222222...3 PP

                 HHHHHHHHHHH CS
   Cellulase 106 kklwtqiAery 116
                  ++ +   +r+
  CTQ26778.1 155 HDYTRDTIARF 165
                 33444555555 PP

>> Glyco_hydro_cc  Glycosyl hydrolase catalytic core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.42   2.5e+03      51      80 ..     100     130 ..      96     144 .. 0.71
   2 !   15.4   0.1   1.7e-06      0.01     104     186 ..     222     304 ..     209     333 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.42
  Glyco_hydro_cc  51 sad.tdalanvksaakenskylLgFNePDlk 80 
                     ++d + +la +k+a+++++k lL F   D+ 
      CTQ26778.1 100 NNDlATTLALAKRAKAQGMKLLLDFHYSDFW 130
                     3333688888999999999****99988874 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.7e-06
  Glyco_hydro_cc 104 kgvklvsPavaatnseegleWldeFleacskdckvdflavHwYkgd.feelkehieelheaynkpiWvTEfalqsesgdasqee 186
                     ++vk++      t++++   W+de  ++     +v  l+++ Y++  ++ lk+++++++++ynk++ v E a   + +++++ e
      CTQ26778.1 222 EQVKIMLHLAEGTKNDTFRWWFDEIDKRHV-PYDVIGLSMYTYWNGpISALKANMDDISKRYNKDVIVVEAAYAYTLANCDNAE 304
                     666666666644444222234444333333.3344445677776556***********************99877555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3101.16
//
Query:       CTQ26779.1  [L=685]
Description: Beta-galactosidase BglY [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.1e-154  513.9   3.8   3.8e-154  513.5   3.8    1.1  1  Glyco_hydro_42   Beta-galactosidase
    2.6e-73  245.9   0.0    4.2e-73  245.3   0.0    1.3  1  Glyco_hydro_42M  Beta-galactosidase trimerisation domain
    8.4e-10   38.2   0.0    1.6e-09   37.3   0.0    1.5  1  Glyco_hydro_42C  Beta-galactosidase C-terminal domain
  ------ inclusion threshold ------
      0.043   13.8   0.2       0.14   12.1   0.2    1.9  1  DUF4434          Domain of unknown function (DUF4434)
      0.045   12.7   0.1       0.08   11.9   0.1    1.3  1  Glyco_hydro_14   Glycosyl hydrolase family 14


Domain annotation for each model (and alignments):
>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  513.5   3.8  1.1e-157  3.8e-154       1     373 [.      19     392 ..      19     393 .. 0.98

  Alignments for each domain:
  == domain 1  score: 513.5 bits;  conditional E-value: 1.1e-157
                     E--GGGS-C..CHHHHHHHHHHHHT--EEEE-TT-HHHH-SBTTB---HHHHHHHHHHHCTT-EEEEE-STTS--HHHHHH-GGGS-B-TTS-B- CS
  Glyco_hydro_42   1 dYnPeqwpe..eaweedirlmkeagvnvvrlgefaWaklePeegkydFewLdevldllekagikviLatptaapPaWlvkkyPeilavdadgskr 93 
                     dYnPeqw++  +++++di +m++a++nv+++g+f+WakleP+eg ++F+wLd +ld+l++agi+v+Latp++a+PaW++++yP +l+v++d+ + 
      CTQ26779.1  19 DYNPEQWENdpDIIDKDIAMMQQAKCNVMSVGIFSWAKLEPREGVFNFAWLDIILDKLYAAGIHVFLATPSGARPAWMSQRYPQVLRVGRDRVPA 113
                     8*******9889*********************************************************************************** PP

                     -SSSS----TT-HHHHHHHHHHHHHHHHHHTT-TTEEEEE-SSSTTTTS--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S CS
  Glyco_hydro_42  94 kfgsrqhiclsspvyrekvakivealaerYkdhpavilwhidnEygchecycetceeaFrkwlkekYgtidelneawgtafWsqeysdfeeielP 188
                      +g+r+++c+sspvyrek+ +i++ laerY +hpav++whi+nEyg+ ec+c+ c+++Fr+wlk++Y+t+++ln+aw+ +fWs++y+d+++ie+P
      CTQ26779.1 114 LHGGRHNHCMSSPVYREKTLQINTLLAERYSSHPAVLGWHISNEYGG-ECHCDLCQNRFRDWLKARYQTLENLNQAWWSTFWSHTYTDWSQIESP 207
                     ***********************************************.*********************************************** PP

                     -S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT.--SS-HHHHGGGSSSEEEEE-HH.---HHHHH-TTHHHHHHHHH CS
  Glyco_hydro_42 189 selseeenpskildykrFssdqilefvkaeaeilreyspdipvttnfmgsafkdldyvklakeldivswdsYpt.rskeekeekldelalkhdly 282
                     ++ +e+  ++++ld++rF+++q+++f+++e   l++++ ++pvttnfm+  f+d+dy++la+ ld++swdsYp+ ++ +++++ +  +a+ hd++
      CTQ26779.1 208 APQGEMSIHGLNLDWHRFNTAQVTDFCRHEIAPLKAANASLPVTTNFMEY-FYDYDYWRLAEALDFISWDSYPMwHRDKDETALACYTAMYHDMM 301
                     *************************************************8.***********************766666777999********* PP

                     HHHTTT-.EEEEEE--S--SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-SB--SSSTTTTS--SB-TTS.-B-HHHHHHHHHHHHHHT CS
  Glyco_hydro_42 283 rslkkgkpflvmEqqpsavnwapvnkakapGavrlwslqavAhGadavlyFqwrqsrggsEkfhsgvlehvgsektrvfrevkevgeelkk 373
                     rslk gkpf++mE++p+a+nw+p++k+k+pG++ l+slqavAhGad v+yFqwr+srg++Ekfh++v++hvg+ +tr +rev+++ge l+k
      CTQ26779.1 302 RSLKGGKPFVLMESTPGATNWQPTSKLKKPGMHILSSLQAVAHGADSVQYFQWRKSRGSVEKFHGAVVDHVGHIDTRIGREVCQLGEILSK 392
                     **************************************************************************************99987 PP

>> Glyco_hydro_42M  Beta-galactosidase trimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.3   0.0   1.2e-76   4.2e-73       1     206 [.     403     615 ..     403     616 .. 0.99

  Alignments for each domain:
  == domain 1  score: 245.3 bits;  conditional E-value: 1.2e-76
  Glyco_hydro_42M   1 aevAivfdweskwaiesqegpssrdldyrsevrkyYrallelgvpvDvvseeadlsgYklvvaPtlylvseelvkkleafvenGGtlvltylsG 94 
                      a+vAi+fd +++wa+++++gp++ +++y+++v+++Yr ++e g+ vDv+ ++ dl+ Y+lv+aP+ly+v+++++ ++eafv+nGG+lv+ty++G
       CTQ26779.1 403 AKVAIIFDQQNRWALDDAQGPRNLGMEYEKTVNEHYRPFWEQGIAVDVIDADVDLTPYQLVIAPMLYMVRDGFAGRAEAFVANGGHLVTTYWTG 496
                      89******************************************************************************************** PP

  Glyco_hydro_42M  95 vvdendrihlggvpgpLrellGikveeldtlpeeeevevs.aegkt......yearlwseilepetaevlatyatdfyagtpAvtrnnygkGka 181
                      +v+e+d+++lgg+pgpLr+llGi++ee+d+l ++e + v+  +g++      y++r+++e+++ e+a+ laty++dfyag+pAvt n++gkGka
       CTQ26779.1 497 IVNESDLCYLGGFPGPLRNLLGIWAEEIDCLNDGEFNLVQgLAGNQcglqgpYQVRHLCELIHIESAQALATYRDDFYAGRPAVTVNAFGKGKA 590
                      *****************************************99*999*********************************************** PP

  Glyco_hydro_42M 182 iYvgsrleddlldaLlkklleeael 206
                      + v+sr++ +++++++++l +e  l
       CTQ26779.1 591 WHVASRNDLAFQRDFFTALSKELAL 615
                      *******************999776 PP

>> Glyco_hydro_42C  Beta-galactosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   4.6e-13   1.6e-09       1      58 []     626     683 ..     626     683 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 4.6e-13
                      TEEEEE....ETTEEEEEE-SSS-EE----TT-EEEES-......SEE-TTEEEEEE- CS
  Glyco_hydro_42C   1 gvevqrRengegrylFvlNfsneevtvtlpasagdlltgelaeggvtlePygvaVlre 58 
                      gv ++ R++g + ++F+ N+s++  t+tlp+++ d lt+ ++++ +tl +++ ++lr+
       CTQ26779.1 626 GVVATARTDGDNAFIFLQNYSAQNHTLTLPQGYWDCLTDAAVSAPLTLTAWDCRILRR 683
                      667789*********************************999999***********96 PP

>> DUF4434  Domain of unknown function (DUF4434)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   3.9e-05      0.14     107     135 ..     134     162 ..     117     196 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHTTT-TTEEEEEE----SS-- CS
     DUF4434 107 rvaeelakkYghhkafyGWYiseEidnan 135
                 ++   la++Y++h+a  GW is+E ++  
  CTQ26779.1 134 QINTLLAERYSSHPAVLGWHISNEYGGEC 162
                 56677899****************98764 PP

>> Glyco_hydro_14  Glycosyl hydrolase family 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.2e-05      0.08     161     216 ..     142     197 ..     137     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.2e-05
  Glyco_hydro_14 161 ryPsytesdGwsyPgrGkfqayteyaksslrayvedkygsldkvnkawGtklisea 216
                     ry s++   Gw+        ++ +  ++++r +++ +y +l+++n+aw +   s++
      CTQ26779.1 142 RYSSHPAVLGWHISNEYGGECHCDLCQNRFRDWLKARYQTLENLNQAWWSTFWSHT 197
                     9************9999999***************************977666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 5067.76
//
Query:       CTQ26780.1  [L=104]
Description: PTS system, glucose-specific IIBC component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-11   42.6   0.0    4.6e-11   42.0   0.0    1.2  1  PTS_EIIB  phosphotransferase system, EIIB
  ------ inclusion threshold ------
      0.046   13.8   0.0       0.11   12.5   0.0    1.6  1  PspB      Phage shock protein B
      0.047   13.8   0.1      0.081   13.0   0.1    1.4  1  PT-VENN   Pre-toxin domain with VENN motif


Domain annotation for each model (and alignments):
>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   7.8e-15   4.6e-11       2      34 .]      30      62 ..      29      65 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 7.8e-15
                HHHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB  2 eIldalGGkdNIesvthCaTRLRltlkDaskvd 34
                ++++a+GG+ NI+ v++C+TRLR+ ++  ++vd
  CTQ26780.1 30 ALIQAFGGEANITQVDACITRLRVSVRHLAAVD 62
                689***********************7655555 PP

>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.9e-05      0.11      22      48 ..       7      33 ..       4      36 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.9e-05
        PspB 22 iLHYrskkkrskglsaedekrLeelle 48
                +LHY s  + ++ ls+ +++++e+l++
  CTQ26780.1  7 FLHYFSPARPAQPLSEAEKQQIEALIQ 33
                79**********************986 PP

>> PT-VENN  Pre-toxin domain with VENN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.4e-05     0.081       4      22 ..      20      38 ..      17      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
     PT-VENN  4 LteeEKqtvsalstlaaGl 22
                L+e+EKq++ al+++ +G 
  CTQ26780.1 20 LSEAEKQQIEALIQAFGGE 38
                9****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 849.82
//
Query:       CTQ26781.1  [L=423]
Description: Maltoporin 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     7e-111  371.8  15.3   7.9e-111  371.6  15.3    1.0  1  LamB      LamB porin


Domain annotation for each model (and alignments):
>> LamB  LamB porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.6  15.3  4.4e-115  7.9e-111       1     379 []      33     423 .]      33     423 .] 0.93

  Alignments for each domain:
  == domain 1  score: 371.6 bits;  conditional E-value: 4.4e-115
                 EEEEEEEEEEEETTSSB------TT-S----TT---SEEEEEEEEEEEEEETTEEEEEEEEEEEEE-..............-EEEEEEEEEET-STTST CS
        LamB   1 FhGYaRsGvgvsseggeqkcfqaggagskyRLGnEcdtyaElklgkelekedgkkfkvdvmlayssd..elkndstadesdlalrqayveaknlleflp 97 
                 FhGY+R+Gvgvs++g+e + +q+++ g   RLGnE+dty+El+lg e++k+d+++f++d+m+++ sd  + ++++ +d++++ lrq+++++k+l++ +p
  CTQ26781.1  33 FHGYMRAGVGVSGDGSE-AEWQKNKLG---RLGNESDTYGELELGSEVYKKDDVSFYLDSMVSMVSDgsNDNETTLNDDAQFGLRQLNLQIKGLIPGDP 127
                 9***********88775.689999988...*************************************97656777889999****************** PP

                 T-EEEEEEE--S-EEEGGGTEEEE---EEEEEEEEEE-SSSEEEEEEEEEEEEEEEEC....EEEEEEEEEEEEEEEECCTTEEEEEEEEEEEEE--T. CS
        LamB  98 eatlWaGkrfyrrndihilDfyywdlsGtGaGiedidlgdgklslalvrsdesddsssk...kevsnnaldlrltgiklndggklelgldyaranksd. 192
                 +a +W Gkr+y+r+d+hi+D++yw++sG GaG+e+++lg+g +sla++r d +d ++     ++v+ n +dlr++g+k + g+++e+g+dya++n+++ 
  CTQ26781.1 128 NAVIWGGKRYYQRHDLHIIDTKYWNISGSGAGVENYTLGPGAVSLAWIRGDANDVDYRVdgdSNVNINYIDLRYAGWKPWAGSWTEFGIDYAMPNTTKk 226
                 ******************************************************998779999**********************************99 PP

                 .....-TT---EEEEEEEEEEEEETTEEEEEEEEEEECCCTT-SS---TTE----.....EEEEEEEEEEEEEETTTEEEEEEEEEEEEEE..TTS--E CS
        LamB 193 .....akkaakdgvmltlehtqsflggfnklalqygtglgaenkgggsggelnna.aekdakslrlleqgvvqlsdkfslayavvyqksddrydngddk 285
                        ++a++gvmlt e +q++lgg+nk++lqy++++ a+n+ ++ gg+++ +   +da+ +r++++g +++++kfs+++++++ ++dd +d  d++
  CTQ26781.1 227 qdsygGLYDADNGVMLTGEISQDMLGGYNKTVLQYANKGLAQNMVSQGGGWYDMWnYVNDATGYRVINTGLIPITEKFSINHVLTWGSADDITDYTDKT 325
                 99*99889*************************************9999999877555***************************************** PP

                 EEEEEEEEEEEECCTTEEEEEEEEEEEEE...E.......EEEEEEEEEEEESSSSTT-SSEEEEEEEEEEEEESEEETGGGSB-SS-EEEEEEEEEEE CS
        LamB 286 kwlsagvRpvykltdnfklllElgydrvk...k......gnlyKlTlaptlkagsgfwsRPelRlfatyakwneaakdalskagakkgdtseltfGvqa 375
                 ++ls+++R  y++td+++l+ E+g +++k   +      +   K+T+a  l+ g++f+sRPelR+fa+y++ +e+ k       ++++ +++++fGvq+
  CTQ26781.1 326 RMLSLVARGQYQFTDYVRLIGEVGGFYQKdsyNngtsykQAGEKYTIALGLADGPDFMSRPELRIFASYLNDSEDGKP-----FEDQTANNTWNFGVQV 419
                 *****************************6651555565799*****************************4444444.....455667999******* PP

                 EEEE CS
        LamB 376 EaWW 379
                 EaWW
  CTQ26781.1 420 EAWW 423
                 **** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3514.10
//
Query:       CTQ26782.1  [L=356]
Description: Lactose operon repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-30  104.8   0.0    1.6e-29  103.4   0.0    1.7  2  Peripla_BP_3    Periplasmic binding protein-like domain
    1.8e-18   66.1   4.1      3e-18   65.3   1.6    2.8  3  LacI            Bacterial regulatory proteins, lacI family
    1.2e-16   60.9   0.0    1.7e-16   60.5   0.0    1.1  1  Peripla_BP_1    Periplasmic binding proteins and sugar bindin
    7.8e-15   55.1   0.0    1.1e-14   54.7   0.0    1.2  1  Peripla_BP_4    Periplasmic binding protein domain
    0.00079   18.8   0.1     0.0037   16.6   0.0    2.3  3  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.002   18.5   1.5      0.013   15.8   0.2    2.5  2  HTH_31          Helix-turn-helix domain
     0.0059   16.6   0.1      0.022   14.7   0.1    2.0  1  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0064   16.2   1.2      0.028   14.2   0.1    2.6  3  HTH_23          Homeodomain-like domain
     0.0085   16.1   1.8      0.013   15.5   0.1    2.1  2  HTH_3           Helix-turn-helix
  ------ inclusion threshold ------
      0.015   15.1   0.5       0.26   11.1   0.0    2.9  3  HTH_38          Helix-turn-helix domain
       0.02   14.8   0.3      0.051   13.5   0.3    1.7  1  TrmB            Sugar-specific transcriptional regulator TrmB
      0.022   14.6   0.0      0.059   13.2   0.0    1.7  1  HTH_10          HTH DNA binding domain
      0.026   14.6   0.0      0.058   13.5   0.0    1.7  1  HTH_AraC        Bacterial regulatory helix-turn-helix protein
       0.03   14.5   0.4        0.2   11.9   0.1    2.1  2  DUF3069         Protein of unknown function (DUF3069)
      0.053   13.6   0.2       0.22   11.6   0.2    2.1  1  HTH_35          Winged helix-turn-helix DNA-binding
      0.073   13.2   0.0       0.61   10.3   0.0    2.3  2  HTH_28          Helix-turn-helix domain
      0.085   13.1   0.1       0.36   11.1   0.0    2.0  2  Nterm_IS4       Insertion element 4 transposase N-terminal
      0.089   13.0   0.0       0.22   11.8   0.0    1.6  1  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
       0.11   13.4   0.6       0.22   12.4   0.6    1.5  1  Alb1            Alb1
       0.26   11.1   1.1       0.53   10.1   0.6    1.7  2  IL31            Interleukin 31


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       3.5   3.1e+03      67     100 ..      56      96 ..       9      97 .. 0.51
   2 !  103.4   0.0   1.8e-32   1.6e-29       1     166 []     173     330 ..     173     330 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.5
                   HHH..HHCC...-SE..EEEESSCCHHHHHHHHHCCTT--T CS
  Peripla_BP_3  67 qal..klaa...lPt..AviaasDelAlgvlqalreaglrv 100
                   q+l  k  +   l t    + a  ++A++v ++++ +g++v
    CTQ26782.1  56 QQLvgKESQtvgLVTisLAWHAPSQVAAAVKRYANLEGYQV 96 
                   44444222223333333333356677777777777777665 PP

  == domain 2  score: 103.4 bits;  conditional E-value: 1.8e-32
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-.EEEEE-S-SS-SSHHHHH.....HHHHHCC-SE..EEEESSCCHHHHHHHHHC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglp.lnetvvaaddpaaaaaaraalllqalklaalPt..AviaasDelAlgvlqalr 94 
                   v++L+e Ghr+ia+++  g++ + ++++r++ + ++l  +gl+ + +  +++d ++++a+a ++l       ++ P   Av++ +D++Algvl+a++
    CTQ26782.1 173 VKYLYEMGHREIALLA--GPDSSVSAKLRLKSWLETLDGYGLKpVTVLHGNWDAQSGYAGALQML-------RETPNfsAVLVGNDQMALGVLSAFH 260
                   689*************..99999*******************95555666666666666666666.......2256455****************** PP

                   CTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEE.E--EEE--GGG CS
  Peripla_BP_3  95 eaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvl.lppelveReSt 166
                   +++++vP + svig+dd+ +++++ P+l+tv+++l+  G++a++ +l+       +p++ + lp +lv+R+S+
    CTQ26782.1 261 QHQVAVPGEKSVIGYDDTYESSFFYPALSTVSLDLDLQGKEAVRRILAST---SGAPHTSSiLPARLVIRHSS 330
                   *****************9999*************************9886...555555565999******96 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   1.6   3.4e-21     3e-18       1      46 []       7      52 ..       7      52 .. 0.99
   2 ?   -2.7   0.0         6   5.4e+03      11      30 ..      66      85 ..      66      87 .. 0.76
   3 ?   -1.9   0.0       3.3     3e+03       5      10 ..     184     189 ..     182     201 .. 0.51

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 3.4e-21
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                t+ DVAr AGVS++TVSrvLn++ +Vse+tr +Ve+ +e l Y+Pn
  CTQ26782.1  7 TLEDVARHAGVSYQTVSRVLNKSANVSEATRRKVEKSIEALRYVPN 52
                89*******************************************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6
                S-HHHHHHHCTTSSSSTHHH CS
        LacI 11 VSkaTVSrvLnnkerVseet 30
                V   T+S   + +++V+++ 
  CTQ26782.1 66 VGLVTISLAWHAPSQVAAAV 85
                66678898888888888876 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.3
                 HHHHCT CS
        LacI   5 VArlAG 10 
                 +A lAG
  CTQ26782.1 184 IALLAG 189
                 555555 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   1.9e-19   1.7e-16      30     257 ..      92     308 ..      75     328 .. 0.80

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 1.9e-19
                   HTEEEE..EEE-SSHHHHHHHHHHHHHTT-SEEEEE-S-GG..HHHHHHHHHHT-EEEEESS--B-TTTS-EEEE-HHHHHHHHHHHHHHHHHHHTG CS
  Peripla_BP_1  30 hgvdvl..llaageeedlakaidllkakgidgliiatsdts..fdditakaesgipvialedaidapdgvPcvipddtqageestqkLiaeghkrpi 122
                    g++vl  ++    ++ ++  i+ lk++++d +ii  + +     +i a +   i  ++l+   +    v  v ++       s ++L++ gh++ i
    CTQ26782.1  92 EGYQVLisMIDESVNQSIQDSINELKSQRVDKVIINVPLETeqAQKIAADNDD-IVCLFLDVDPY--SSVFNVSFNPADGTRASVKYLYEMGHRE-I 184
                   44444411566666777779***************955444024445444444.55555554433..45777778877778899***********.* PP

                   EEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHHHHHHHHHHTT.--GGGEEEEEESSGG CS
  Peripla_BP_1 123 allegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaalGavlalkkeGrlkikeevdsfiesvv 219
                   all+gp+s+  ak r + +l++l + Gl  k v v+ g  d + ++  + ++l++ P+++a+  +nd++alG   a  ++  +  ++e      sv 
    CTQ26782.1 185 ALLAGPDSSVSAKLRLKSWLETLDGYGL--KPVTVLHGNWDAQSGYAGALQMLRETPNFSAVLVGNDQMALGVLSAFHQHQ-VAVPGEK-----SVI 273
                   ****************************..******************************************777777776.8888888.....999 PP

                   GHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHH CS
  Peripla_BP_1 220 vydgLkkaqdtilelsplaviqlprellGrkasdmvlq 257
                   +yd      ++ ++ + l + +l ++l+G++a  ++l 
    CTQ26782.1 274 GYDDT---YESSFFYPALSTVSLDLDLQGKEAVRRILA 308
                   99998...8999999*****************999987 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   1.2e-17   1.1e-14      15     220 ..      80     279 ..      66     282 .. 0.84

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.2e-17
                   HHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHHHHHHH CS
  Peripla_BP_4  15 aaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdneaaGelq 111
                   ++  +++ +a+ +g++v +   +e+ ++  ++ i+ + ++ vd +i+++   t+ a+ ++ a +  I+  + d d    ++ + +v+f+  +  ++ 
    CTQ26782.1  80 QVAAAVKRYANLEGYQVLISMIDESVNQSIQDSINELKSQRVDKVIINVPLETEQAQKIA-ADNDDIVCLFLDVD---PYSSVFNVSFNPADGTRAS 172
                   588899************98555555566778899999*****66666555555554444.56778999999999...******************* PP

                   HHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSCCHHHCHHHHHHHTTT CS
  Peripla_BP_4 112 aeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanp.ldgilaandgmaegalealeaagl 207
                    +yl e       ++++laG  ++  a++r++   ++l++y g+k v+ v ++nwda+ ++  + ++l++ p   ++l  nd ma+g+l+a+ + ++
    CTQ26782.1 173 VKYLYEMGHR---EIALLAGPDSSVSAKLRLKSWLETLDGY-GLKPVT-VLHGNWDAQSGYAGALQMLRETPnFSAVLVGNDQMALGVLSAFHQHQV 264
                   ******9984...6**************************6.666665.3467****************7744*********************999 PP

                   ..TSTEEEEEES-HH CS
  Peripla_BP_4 208 ..agkvvvtgqDatp 220
                      g++ v+g+D t 
    CTQ26782.1 265 avPGEKSVIGYDDTY 279
                   8777777***99875 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.1e-06    0.0037      27      49 ..       5      27 ..       1      30 [. 0.88
   2 ?   -2.8   0.0         5   4.5e+03      20      33 ..     231     244 ..     229     244 .. 0.85
   3 ?   -3.0   0.0       5.7   5.1e+03      30      38 ..     340     348 ..     336     348 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.1e-06
  HTH_Tnp_ISL3 27 srsvkavArqlgvSwtTVwrild 49
                  s++  +vAr+ gvS  TV r+l+
    CTQ26782.1  5 SATLEDVARHAGVSYQTVSRVLN 27
                  47999****************97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5
  HTH_Tnp_ISL3  20 ilelllesrsvkav 33 
                   +l++l+e+ +++av
    CTQ26782.1 231 ALQMLRETPNFSAV 244
                   7999***9999997 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.7
  HTH_Tnp_ISL3  30 vkavArqlg 38 
                    +a+A+ql+
    CTQ26782.1 340 LQAIAEQLR 348
                   578999886 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   1.5e-05     0.013      15      55 ..       6      48 ..       2      57 .. 0.76
   2 ?    0.8   0.1      0.71   6.3e+02      27      52 ..     327     352 ..     320     355 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.5e-05
      HTH_31 15 LsqeevAerlgvsestlsrlEqGrrgrpspa...vlealaralg 55
                 ++e+vA+++gvs  t+sr+ +    ++s+a    +e+  +al+
  CTQ26782.1  6 ATLEDVARHAGVSYQTVSRVLNKSA-NVSEAtrrKVEKSIEALR 48
                589*******************988.586662226666666665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.71
      HTH_31  27 sestlsrlEqGrrgrpspavlealar 52 
                   s   r+EqG+      ++l+a+a+
  CTQ26782.1 327 RHSSGARIEQGKDLQAIAEQLRAIAH 352
                 56777899999986556667777775 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   2.4e-05     0.022      23      44 ..       7      28 ..       4      47 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-05
                HHHHHHHHTTSSHHHHHHHHHH CS
   HTH_Crp_2 23 tqeelAsmlGltretvsrilse 44
                t e+ A++ G++ +tvsr+l++
  CTQ26782.1  7 TLEDVARHAGVSYQTVSRVLNK 28
                779*****************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   3.1e-05     0.028      18      40 ..       6      28 ..       2      48 .. 0.85
   2 ?   -0.9   0.0       1.8   1.6e+03      31      45 ..      78      93 ..      77      97 .. 0.77
   3 ?   -3.2   0.1       9.1   8.2e+03      16      27 ..     336     347 ..     332     349 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-05
      HTH_23 18 lsvreIAreLgvsrrTvyrwlkr 40
                ++ +++Ar+ gvs++Tv+r+l++
  CTQ26782.1  6 ATLEDVARHAGVSYQTVSRVLNK 28
                5789****************998 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.8
      HTH_23 31 rrTvyrwlkryre.eG 45
                +++v   +kry++ eG
  CTQ26782.1 78 PSQVAAAVKRYANlEG 93
                6888889999976566 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 9.1
      HTH_23  16 eGlsvreIAreL 27 
                 +G+  ++IA++L
  CTQ26782.1 336 QGKDLQAIAEQL 347
                 577889999988 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.5e-05     0.013      11      40 ..       7      36 ..       2      44 .. 0.88
   2 ?   -1.5   0.2       3.1   2.8e+03       5      19 ..     333     347 ..     332     350 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-05
                HHHHHHHHHTSSHHHHHHHHTTSSCSBHHH CS
       HTH_3 11 sqeeLAeklGvsrstisriEnGernPslet 40
                ++e++A+ +Gvs++t+sr  n  +n s  t
  CTQ26782.1  7 TLEDVARHAGVSYQTVSRVLNKSANVSEAT 36
                789******************999988765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.1
                 HHHTTHHHHHHHHHH CS
       HTH_3   5 RkqlglsqeeLAekl 19 
                 R ++g +++ +Ae l
  CTQ26782.1 333 RIEQGKDLQAIAEQL 347
                 777777777777755 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00029      0.26      19      41 ..       4      26 ..       1      28 [. 0.87
   2 ?   -2.8   0.0       6.3   5.6e+03      21      28 ..     179     186 ..     175     190 .. 0.78
   3 ?    0.5   0.1       0.6   5.4e+02      17      30 ..     334     347 ..     327     354 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00029
      HTH_38 19 eGlslreIArrLgrspsTIsREl 41
                +  +l ++Ar+ g+s +T+sR l
  CTQ26782.1  4 KSATLEDVARHAGVSYQTVSRVL 26
                567899***************98 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.3
      HTH_38  21 lslreIAr 28 
                 ++ reIA 
  CTQ26782.1 179 MGHREIAL 186
                 77899995 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.6
      HTH_38  17 laeGlslreIArrL 30 
                 +++G+ l +IA +L
  CTQ26782.1 334 IEQGKDLQAIAEQL 347
                 67888888888877 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   5.6e-05     0.051      19      45 ..       2      28 ..       1      50 [. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.6e-05
                HHCCCHHCHHCCCTTSSCHCHHHHHHH CS
        TrmB 19 klgpatadeiaeelgvprskvYevLrs 45
                k+++at +++a+++gv++++v +vL++
  CTQ26782.1  2 KSKSATLEDVARHAGVSYQTVSRVLNK 28
                7889*********************97 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.6e-05     0.059      21      47 ..       3      29 ..       2      32 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.6e-05
      HTH_10 21 PRrvtlkeLAkelGIskstlsehLrka 47
                ++ +tl+++A   G+s +t+s  L+k+
  CTQ26782.1  3 SKSATLEDVARHAGVSYQTVSRVLNKS 29
                5899********************997 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.5e-05     0.058       2      29 ..       2      26 ..       1      33 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.5e-05
                HCCCSCT--HHHHHHHTTSSHHHHHHHH CS
    HTH_AraC  2 renlstnltiediAdelgfSrsyFsrlF 29
                +   s + t+ed+A ++g+S ++ sr++
  CTQ26782.1  2 K---SKSATLEDVARHAGVSYQTVSRVL 26
                5...6778******************86 PP

>> DUF3069  Protein of unknown function (DUF3069)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00022       0.2      16     113 ..      30     127 ..      19     130 .. 0.77
   2 ?   -0.0   0.0       1.1     1e+03      29      66 ..     221     260 ..     216     270 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00022
                 HHHHHH...TT-HHHHHHHHS-HH.HHTSS-H.HHHHHHH.HHHHHHHHHHH--..-HHHHHHTTTTS-HHHHHHHHHHHHHTHHHHHHHHHHHHTT-H CS
     DUF3069  16 aslyee...seekvreaWdalPaS.AqnlldnfeqFhalv.ianaflqlsrvaeleeiseqedsdeeekeeernqlldrvlenslKelvkklKkaRrdr 109
                 a++ e+   + ek  ea   +P+  Aq+l+ +  q  +lv i+ a+   s va   +++  ++ +     +   +++d+ +++s+++++ +lK+ R d+
  CTQ26782.1  30 ANVSEAtrrKVEKSIEALRYVPNRlAQQLVGKESQTVGLVtISLAWHAPSQVAA--AVKRYANLE---GYQVLISMIDESVNQSIQDSINELKSQRVDK 123
                 55555522233444455555676449999*9999*******************9..777777665...4567788999999*****************9 PP

                 HHHH CS
     DUF3069 110 slkn 113
                  + n
  CTQ26782.1 124 VIIN 127
                 8876 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.1
                 HHHHS-..HHHHTSS-H.HHHHHHHHHHHHHHHHHH--.. CS
     DUF3069  29 aWdalP..aSAqnlldnfeqFhalvianaflqlsrvaele 66 
                  Wda+   a A ++l +  +F a++++n  + l ++  ++
  CTQ26782.1 221 NWDAQSgyAGALQMLRETPNFSAVLVGNDQMALGVLSAFH 260
                 57777622456788999999*******9999998887765 PP

>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   0.00024      0.22      12      44 ..       2      34 ..       1      39 [. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
      HTH_35 12 rkrgttLaalsreaglssstlsnaltrpwpkgE 44
                + +  tL +++r+ag s +t+s++l+++   +E
  CTQ26782.1  2 KSKSATLEDVARHAGVSYQTVSRVLNKSANVSE 34
                67899*********************9987777 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00068      0.61      14      35 ..       7      28 ..       2      28 .. 0.88
   2 ?   -0.7   0.0       1.8   1.6e+03      26      38 ..      78      90 ..      77      97 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00068
      HTH_28 14 svreaArelgisrrtvyrWikr 35
                +  ++Ar+ g+s++tv+r +++
  CTQ26782.1  7 TLEDVARHAGVSYQTVSRVLNK 28
                56689*************9986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.8
      HTH_28 26 rrtvyrWikryee 38
                +++v   +kry  
  CTQ26782.1 78 PSQVAAAVKRYAN 90
                7899999999987 PP

>> Nterm_IS4  Insertion element 4 transposase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.3     3e+03      53      72 ..      19      38 ..      12      84 .. 0.64
   2 ?   11.1   0.0    0.0004      0.36      13      66 ..     300     353 ..     294     356 .] 0.93

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.3
   Nterm_IS4 53 yeevvrrLtagleeeaewel 72
                y++v r L+++++  ++++ 
  CTQ26782.1 19 YQTVSRVLNKSANVSEATRR 38
                44444444444444333333 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0004
   Nterm_IS4  13 pelvdevlaetgtaevRkrkLPaevvvylvlalaLfrdesyeevvrrLtaglee 66 
                 +e v ++la+t  a + +  LPa++v+    +  + ++++++ ++++L a +++
  CTQ26782.1 300 KEAVRRILASTSGAPHTSSILPARLVIRHSSGARIEQGKDLQAIAEQLRAIAHR 353
                 689*********************************************998876 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00025      0.22      27      66 ..      11      50 ..       8      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
  NAD_binding_11 27 laekaGldpekvlevinassgrsnalenklpqrvlsrdfd 66
                    +a++aG+  ++v +v+n+s+  s a+++k+++++ + ++ 
      CTQ26782.1 11 VARHAGVSYQTVSRVLNKSANVSEATRRKVEKSIEALRYV 50
                    689****************************999776665 PP

>> Alb1  Alb1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6   0.00025      0.22      66      95 ..      25      54 ..       2      57 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00025
        Alb1 66 gleraeavterlekKieksisrakyvqeRk 95
                 l+++++v+e + +K+eksi+ ++yv +R 
  CTQ26782.1 25 VLNKSANVSEATRRKVEKSIEALRYVPNRL 54
                6889**********************9985 PP

>> IL31  Interleukin 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.6   0.00059      0.53       8     108 ..      34     132 ..      28     138 .. 0.82
   2 ?   -2.7   0.0       5.1   4.6e+03       9      25 ..     335     351 ..     329     354 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00059
        IL31   8 rpskedlkkiikeLkslskklledyekkekGvsesesyqlpcltsdreapnninssailay..lkaikplld..nksdideiieqLkklklqnepevni 102
                 +  ++ ++k i+ L++  + l ++        +es+++ l ++++  +ap ++ ++a++ y  l+  + l++  ++s+ ++i + +++lk+q+   v i
  CTQ26782.1  34 EATRRKVEKSIEALRYVPNRLAQQLVG-----KESQTVGLVTISLAWHAPSQV-AAAVKRYanLEGYQVLISmiDESVNQSIQDSINELKSQRVDKVII 126
                 555667888999999999999988886.....679999***************.999998855677666654338888999****************** PP

        IL31 103 svPtns 108
                  vP ++
  CTQ26782.1 127 NVPLET 132
                 ***875 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.1
        IL31   9 pskedlkkiikeLksls 25 
                  + +dl+ i ++L++ +
  CTQ26782.1 335 EQGKDLQAIAEQLRAIA 351
                 44568888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 2985.35
//
Query:       CTQ26783.1  [L=87]
Description: putative ribosomal protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-22   80.0   0.4    1.4e-22   79.7   0.4    1.1  1  Ribosomal_L31  Ribosomal protein L31


Domain annotation for each model (and alignments):
>> Ribosomal_L31  Ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.4   7.6e-27   1.4e-22       1      67 []       1      78 [.       1      78 [. 0.99

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 7.6e-27
  Ribosomal_L31  1 mKkgiHPeyrevvvkca.cgeefltrStl..........kekpeikvdvcsksHPfYtGkqklvdtaGrvekFkkryg 67
                   mK+ iHP yr+vv++++ ++e f+++St+          ++ p +++dv+sksHP+YtGkqk++ ++G  ++F++r+g
     CTQ26783.1  1 MKAHIHPLYRTVVFHDTsANEYFKVGSTIrtdrvieldgETFPYVTIDVSSKSHPYYTGKQKTFANEGSAARFRQRFG 78
                   9*************************************999************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 780.61
//
Query:       CTQ26784.1  [L=47]
Description: putative ribosome maturation protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-16   58.5   2.5    7.2e-16   58.1   2.5    1.2  1  Ribosomal_L36  Ribosomal protein L36


Domain annotation for each model (and alignments):
>> Ribosomal_L36  Ribosomal protein L36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   2.5     4e-20   7.2e-16       1      38 []       2      42 ..       2      42 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 4e-20
  Ribosomal_L36  1 MKVrssvkkmc...egCkvvrRkgrvyviCkknPrhKqRQG 38
                   M V +s+++ +   ++C++v+Rkgr+yviCk+nPr+K+ QG
     CTQ26784.1  2 MQVVNSLRSAKqrhPDCQLVKRKGRLYVICKSNPRFKAVQG 42
                   99*******99999**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 367.00
//
Query:       CTQ26785.1  [L=232]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-16   61.5   0.1    1.8e-16   61.0   0.1    1.2  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
      0.002   18.3   0.0     0.0032   17.7   0.0    1.3  1  Acetyltransf_1  Acetyltransferase (GNAT) family
     0.0043   17.2   0.0     0.0057   16.8   0.0    1.2  1  Acetyltransf_4  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.1   3.1e-20   1.8e-16       1     138 []      33     174 ..      33     174 .. 0.87

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 3.1e-20
  Acetyltransf_3   1 RLlLrplteeDlealfe...lrsdpevmry.lpe.pltleeaeewlerawaeeseeegygwaivlkdtgv.iGsvglrdleeedeeaelgymlap 89 
                     R  L plt +++ +lf+   l+ d + +++ l+e + +l+e  +w+e++ +     +   +a+v+++ g  +Gs  l +++  ++ +e+g +  +
      CTQ26785.1  33 RCRLEPLTLAHASDLFAahqLAPDARSWTWlLREpENNLAEFSAWVEQVATL---ADPIHFAVVDQQRGKaVGSLALMRIDIAHGVVEVGHVHFS 124
                     6789**********974244788888888894445899*********87444...37899***99777755*******************88776 PP

  Acetyltransf_3  90 s.fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     +   +   atea   l++y+f++lg++r +++++  N  S+r +++lGf+
      CTQ26785.1 125 PlLSRTAMATEAHWLLMQYVFDTLGYRRYEWKCNSLNIPSARAARRLGFQ 174
                     659999*******************************************6 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.4e-07    0.0032       4     117 .]      57     173 ..      54     173 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.4e-07
                     HHHHHHHHTHHHHHHHHHHH.HHHHHHSTTC.EEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TE CS
  Acetyltransf_1   4 lvellvesffppnedaseee.feesfsleae.gllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gi 94 
                     ++++ ++  +p+n+ a++ + +e+ + l ++ ++ v  +  g+ +G + l  i+  + gv+++  ++ sp   +   +++  + l++++++  g+
      CTQ26785.1  57 ARSWTWLLREPENNLAEFSAwVEQVATLADPiHFAVvDQQRGKAVGSLALMRIDI-AHGVVEVGHVHFSPLLSRTAMATEAHWLLMQYVFDTlGY 150
                     56666666666666666666433334445554444425555*******9999999.89************************************* PP

                     SEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  95 kkivlaveedndaairlYeklGF 117
                     ++ ++ + + n ++ r  ++lGF
      CTQ26785.1 151 RRYEWKCNSLNIPSARAARRLGF 173
                     999****999********88**9 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   9.6e-07    0.0057      29     153 ..      66     192 ..      41     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.6e-07
  Acetyltransf_4  29 yevssveefekflealdsek.eyvflvae..sdrivGyaylgqfkkrakdwkael.svylaerdnnkeglgrelidaleqvl.keqnienllaei 118
                     + ++ + ef  + e++ ++   + f v +   ++ vG ++l  ++     + +e+  v +   + + + ++ e + +l+q+     ++++ + + 
      CTQ26785.1  66 EPENNLAEFSAWVEQVATLAdPIHFAVVDqqRGKAVGSLALMRIDI--AHGVVEVgHVHFS-PLLSRTAMATEAHWLLMQYVfDTLGYRRYEWKC 157
                     4568899999999999554448999999988899999999999998..6666666345554.67777888999999*****99************ PP

  Acetyltransf_4 119 aspnensiqfhkalGFelvgifkkcikkngrwiDm 153
                      s n++s+  + +lGF+ +g+f+++   +g+  D 
      CTQ26785.1 158 NSLNIPSARAARRLGFQYEGRFRQALVSKGHNRDT 192
                     **************************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1729.72
//
Query:       CTQ26786.1  [L=483]
Description: Transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-22   78.4   0.0    8.4e-22   77.8   0.0    1.2  1  Aminotran_1_2  Aminotransferase class I and II
    9.6e-11   41.2   1.7    1.7e-10   40.4   0.4    2.2  2  GntR           Bacterial regulatory proteins, gntR family
     0.0016   18.4   0.9     0.0092   15.9   0.3    2.5  2  HTH_Crp_2      Crp-like helix-turn-helix domain
     0.0034   16.9   0.2     0.0088   15.6   0.0    1.9  2  HTH_24         Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.035   14.0   6.5       0.13   12.1   0.2    3.8  4  MarR_2         MarR family
      0.041   14.2   0.1       0.19   12.0   0.0    2.1  2  DUF1400        Alpha/beta hydrolase of unknown function (DUF1
      0.049   13.9   5.5        0.1   12.8   0.3    2.9  3  TetR_C_6       BetI-type transcriptional repressor, C-termina
      0.097   12.6   0.0       0.27   11.2   0.0    1.7  1  MarR           MarR family
      0.098   12.9   3.6       0.29   11.4   3.6    1.7  1  OrfB_IS605     Probable transposase
       0.11   12.5   0.0       0.29   11.1   0.0    1.7  1  HTH_36         Helix-turn-helix domain
       0.14   11.8   0.0       0.36   10.6   0.0    1.7  1  HTH_41         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   5.1e-25   8.4e-22      30     323 ..     147     429 ..     131     451 .. 0.87

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 5.1e-25
                    HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEET CS
  Aminotran_1_2  30 galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyse 125
                      ++g+ l  yg   g p l+ea+a+ l  s ++  +   ++v + Ga ++ ++++ ll  npgd +++ +p y     +++ +g+ v+ ++++  
     CTQ26786.1 147 LREDGSALLGYGEAAGDPLLREAIARHLALSRGIRCDIR-QIVITEGALEGVNLCASLL-TNPGDSVWLEEPGYLGARSGFQRAGLRVRGMAVD-- 238
                    4589999**********************9999999999.*******************.7*******************************44.. PP

                    TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-T..TT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEES CS
  Aminotran_1_2 126 edfhldlealeealkeapegnkktkvilvesphN..PtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgsl 219
                    ++  + ++++ e           +  ++++sp++  P+G++++     +l++ a++++++++ D+  ++f    + ++++ +++ ++  ++ +g++
     CTQ26786.1 239 DEGMCIANGVAE-----------PPRLIFTSPSHqyPCGSIMSAGRRLALVEYARRHGAWIVEDDYDSEFRHSGE-PIPAMLGMVPDAPVVYLGTF 322
                    444444444444...........3356778888778*****************************9999988754.5566999999999******* PP

                    SSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS...TEEEECCSCSSEEEE CS
  Aminotran_1_2 220 sKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael...glkvlasqsgmfllt 310
                    sK +  + +R+G+ +  +a++++++++  ++l     + q+a+a  +++ + ++++l +mr+ + kr ++lr++La+      +vl+  +gm l +
     CTQ26786.1 323 SKTL-FPALRIGFMVMPPALADAAQDAIGALLRggHRAEQRALASFIEKGH-YARHLAAMRRLYRKRQQQLREALAQEitvPCDVLGGGGGMHLTV 416
                    **98.8999*********************999989999999999999877.788********************988988888888888988888 PP

                    EETHHCHHHHHHH CS
  Aminotran_1_2 311 dlsaetakelskk 323
                     ++  ++  l+++
     CTQ26786.1 417 AMEGVNDRTLAQQ 429
                    8888877766666 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.4     1e-13   1.7e-10       2      61 ..      25      83 ..      24      86 .. 0.92
   2 ?   -3.3   0.0       4.6   7.4e+03      41      46 ..     391     396 ..     384     402 .. 0.62

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1e-13
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrG 61
                ++++y+ Lr+ Il+g+l++  +LP  r  a++++ sr+tv+ AL +L+ eg+++r ++ G
  CTQ26786.1 25 QRALYHTLRDAILQGTLTARCRLPGSRVMAERLHLSRNTVNAALEQLALEGYLTRSRQ-G 83
                6789*************************************************98655.4 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.6
                 HHHHHH CS
        GntR  41 vReALr 46 
                 +ReAL 
  CTQ26786.1 391 LREALA 396
                 455553 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.3   5.6e-06    0.0092      25      55 ..      51      81 ..      19      88 .. 0.83
   2 ?   -1.0   0.0       1.1   1.8e+03      21      35 ..     164     178 ..     146     179 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.6e-06
                HHHHHHTTSSHHHHHHHHHHHHHTTSEEETE CS
   HTH_Crp_2 25 eelAsmlGltretvsrilseLkreglisrgr 55
                + +A++l l+r tv+ +l +L  eg+++r+r
  CTQ26786.1 51 RVMAERLHLSRNTVNAALEQLALEGYLTRSR 81
                589*************************754 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
                 EHHHHHHHHHTTSSH CS
   HTH_Crp_2  21 pltqeelAsmlGltr 35 
                 pl +e +A++l l+r
  CTQ26786.1 164 PLLREAIARHLALSR 178
                 788999*****9998 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.4e-06    0.0088      23      47 ..      53      77 ..      50      78 .. 0.92
   2 ?   -3.2   0.0       4.1   6.6e+03      23      32 ..     170     179 ..     169     179 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.4e-06
      HTH_24 23 LAerlglSpstvnrrlkrLeeeGlI 47
                 Aerl+lS++tvn+ l++L  eG++
  CTQ26786.1 53 MAERLHLSRNTVNAALEQLALEGYL 77
                79*********************97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.1
      HTH_24  23 LAerlglSps 32 
                 +A++l lS++
  CTQ26786.1 170 IARHLALSRG 179
                 99*****986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.27   4.4e+02      10      39 ..      27      53 ..      25      54 .. 0.79
   2 ?   12.1   0.2   8.2e-05      0.13      27      55 ..      53      81 ..      50      85 .. 0.92
   3 ?    2.3   0.1     0.093   1.5e+02       5      35 ..     137     178 ..     134     179 .. 0.88
   4 ?   -3.0   0.0       4.3     7e+03      25      39 ..     427     441 ..     417     442 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.27
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHH CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavs 39
                +L++  r     + +g l++r++l+ s+v 
  CTQ26786.1 27 ALYHTLRDA---ILQGTLTARCRLPGSRVM 53
                566666665...899**********99985 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8.2e-05
                HHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2 27 larrlglsksavsrilkrLvaaGLverrp 55
                 a+rl+ls+ +v+ +l+ L   G+++r++
  CTQ26786.1 53 MAERLHLSRNTVNAALEQLALEGYLTRSR 81
                69************************996 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.093
                 HHHHHHHHHHHCTTTS...........EEEHHHHHHHHTSSH CS
      MarR_2   5 paqarvLaaLgrrpgr...........dltvgelarrlglsk 35 
                 p ++r++ ++ r++g            +l   ++ar+l ls+
  CTQ26786.1 137 PLWRRLMDNVLREDGSallgygeaagdPLLREAIARHLALSR 178
                 679999********9999999999998889999999999987 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 4.3
                 HHHHHHHTSSHHHHH CS
      MarR_2  25 gelarrlglsksavs 39 
                 ++ ar ++l ++a+s
  CTQ26786.1 427 AQQARQFQLAPAALS 441
                 555899999999987 PP

>> DUF1400  Alpha/beta hydrolase of unknown function (DUF1400)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.2   6.9e+03       2      37 ..      54      89 ..      53      99 .. 0.67
   2 ?   12.0   0.0   0.00012      0.19      20      60 ..     363     402 ..     360     407 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.2
     DUF1400  2 AeritlrygplersisvedLekfaktgevsseLaty 37
                Aer++l+ ++++  ++  +Le +    ++ ++ a +
  CTQ26786.1 54 AERLHLSRNTVNAALEQLALEGYLTRSRQGTQVAPL 89
                777777777777777777777776666666555555 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00012
     DUF1400  20 dLekfaktgevsseLatylkllskeqreelreaLqaeikls 60 
                 +L +f ++g   + La++ + l ++ +++lreaL +ei ++
  CTQ26786.1 363 ALASFIEKGHYARHLAAMRR-LYRKRQQQLREALAQEITVP 402
                 699***************99.99999***********9986 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.073   1.2e+02      27      55 ..       9      37 ..       6      80 .. 0.89
   2 ?   -3.2   0.1       5.7   9.3e+03      63      82 ..     156     176 ..     139     184 .. 0.51
   3 ?   12.8   0.3   6.2e-05       0.1       5      59 ..     345     400 ..     341     428 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.073
                HHHHHHHTT-HHHHHHHHHHHHHHHHHHH CS
    TetR_C_6 27 lafwaeaardpelaelqrenyarlrsnlr 55
                + ++ + +r+  +  lqr++y +lr+ + 
  CTQ26786.1  9 FTLLTQGMRNRTVETLQRALYHTLRDAIL 37
                6788999*****************99876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.7
                 H.TTSCTTSTHHHHHHHHHHH CS
    TetR_C_6  63 e.gglradadaeaaAerlaAl 82 
                   g+ + d  +++a +r  Al
  CTQ26786.1 156 GyGEAAGDPLLREAIARHLAL 176
                 344444444444444444444 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 6.2e-05
                 HHHHHHCCST.HSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHH CS
    TetR_C_6   5 lraileallp.ldqerraelavwlafwaeaardpelaelqrenyarlrsnlralla 59 
                 ++ ++ all  +  +++++la +++   +a++ +++++l+r+ +++lr+ l++++ 
  CTQ26786.1 345 AQDAIGALLRgGHRAEQRALASFIEKGHYARHLAAMRRLYRKRQQQLREALAQEIT 400
                 6667777777445556679999999999************************9986 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00016      0.27      23      51 ..      53      81 ..      28      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
                HHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR 23 LakklgvskstvtrvldrLekkGlieRsk 51
                +a++l++s+ tv  +l +L  +G+++Rs+
  CTQ26786.1 53 MAERLHLSRNTVNAALEQLALEGYLTRSR 81
                79*************************98 PP

>> OrfB_IS605  Probable transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.6   0.00018      0.29      55      94 ..     359     397 ..     357     400 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
  OrfB_IS605  55 keiaelqsklkksknykkasrklarlhrkrsrrrkhllhk 94 
                  e++ l+s+++k + y +  + ++rl+rkr+++++++l +
  CTQ26786.1 359 AEQRALASFIEKGH-YARHLAAMRRLYRKRQQQLREALAQ 397
                 5899********98.9********************9865 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00018      0.29      31      55 .]      53      77 ..      47      77 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00018
      HTH_36 31 lakrlglsknTvsraikeLeqlGyi 55
                +a+rl ls+nTv  a+  L+  Gy+
  CTQ26786.1 53 MAERLHLSRNTVNAALEQLALEGYL 77
                699********************97 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00022      0.36      10      42 ..      51      83 ..      45      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00022
      HTH_41 10 eelakeleLSvGlvQkALklLeddkaislerrG 42
                  +a+ l LS+ +v +AL+ L  ++  + +r+G
  CTQ26786.1 51 RVMAERLHLSRNTVNAALEQLALEGYLTRSRQG 83
                569999********************9999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3672.59
//
Query:       CTQ26787.1  [L=156]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-69  230.5   1.0    8.4e-69  230.3   1.0    1.0  1  YlaC      Inner membrane protein YlaC
  ------ inclusion threshold ------
        2.3    8.4   5.0        4.6    7.5   5.0    1.4  1  DUF5542   Family of unknown function (DUF5542)


Domain annotation for each model (and alignments):
>> YlaC  Inner membrane protein YlaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.3   1.0   9.4e-73   8.4e-69       1     152 [.       1     151 [.       1     153 [. 0.99

  Alignments for each domain:
  == domain 1  score: 230.3 bits;  conditional E-value: 9.4e-73
        YlaC   1 mdeikrllteeierinkeekrdnkvrfsskfikkhpylflamlvsylavavlllyspylglaslilltvllillsavllldikPvyrfedidvldlrvC 99 
                 m+ei+rll+++i+++n +ekrdn++rfs++fi++hp+lf+am++++la++v++l+s++l  +s++ll+vl+il++a++++d++P+yr+edidvld+rvC
  CTQ26787.1   1 MTEIQRLLIHTIDELNVQEKRDNRPRFSISFIRNHPGLFVAMYAAFLATLVVMLRSETLV-DSVWLLVVLFILFNAFFFFDVYPRYRYEDIDVLDFRVC 98 
                 99*********************************************************9.************************************** PP

        YlaC 100 ynGeWyvsrkvseeaieeilsspqvsdevkeeikkllktkgevsfydvyslaf 152
                 ynGeWy++r v++++i++il+sp+v++e+k+++kk+++tkge+sfydv++l++
  CTQ26787.1  99 YNGEWYNTRFVPRQLIDSILQSPDVDSEQKAQLKKMVATKGELSFYDVFTLTR 151
                 **************************************************987 PP

>> DUF5542  Family of unknown function (DUF5542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.0   0.00051       4.6      44      65 ..      61      82 ..      56      83 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00051
     DUF5542 44 hsYWLdlWLFiLfDlvlFiFvY 65
                 s WL + LFiLf+   F+ vY
  CTQ26787.1 61 DSVWLLVVLFILFNAFFFFDVY 82
                589***********99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1054  (0.0587874); expected 358.6 (0.02)
Passed bias filter:                      700  (0.0390429); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1170.22
//
Query:       CTQ26788.1  [L=188]
Description: maltose O-acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-19   69.1   0.5    4.6e-19   68.4   0.5    1.3  1  Mac        Maltose acetyltransferase
    1.2e-15   57.0   7.6    4.1e-11   42.4   2.8    2.5  3  Hexapep_2  Hexapeptide repeat of succinyl-transferase
    1.9e-14   52.7   8.6    1.3e-10   40.6   5.9    2.5  2  Hexapep    Bacterial transferase hexapeptide (six repeats)


Domain annotation for each model (and alignments):
>> Mac  Maltose acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.5   7.8e-23   4.6e-19       1      53 []       7      58 ..       7      58 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 7.8e-23
                HHHTTS-BETTTSHHHHHHHHHHHHHHHHHHTSTTT-HHHHHHHHHHHSSBES CS
         Mac  1 KMlaGelYdafsDpeLvaeRlrarelcrryNqtrpsdkdeRrelLrellGsvG 53
                KM+aGelY + +Dp L a+Rlrar+l++ryN++ p+d+++R+ +L+el++ +G
  CTQ26788.1  7 KMIAGELYLS-GDPTLRADRLRARQLLHRYNHSAPDDQEQRQHILAELFARAG 58
                9*********.8********************88***************9876 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.3   7.6e+03      23      29 ..      73      79 ..      71      81 .. 0.54
   2 !   16.9   0.0   6.5e-07    0.0039      16      33 ..      92     109 ..      84     110 .. 0.85
   3 !   42.4   2.8   6.8e-15   4.1e-11       1      34 []     129     164 ..     129     164 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.3
                T-EE-TT CS
   Hexapep_2 23 ncvvgaG 29
                n  +gaG
  CTQ26788.1 73 NIFLGAG 79
                4445565 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 6.5e-07
                 ESEEE-TT-EE-TT-EE- CS
   Hexapep_2  16 iGvslGdncvvgaGvvit 33 
                 +++++Gdnc +++Gv i+
  CTQ26788.1  92 CPIHIGDNCMLAPGVHIY 109
                 59*************997 PP

  == domain 3  score: 42.4 bits;  conditional E-value: 6.8e-15
                 .EEE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE-S CS
   Hexapep_2   1 pviIGdnCliGanagi..GvslGdncvvgaGvvita 34 
                 pv+IG n+ iG +a+i  Gv++Gdn+v+++G v+t+
  CTQ26788.1 129 PVTIGHNVWIGGRAVInpGVTIGDNAVIASGAVVTK 164
                 8**********************************7 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   2.1e-05      0.12       2      17 ..      94     109 ..      93     112 .. 0.67
   2 !   40.6   5.9   2.1e-14   1.3e-10       2      36 .]     130     164 ..     129     164 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.1e-05
                 EEEETTEEE-TTEEEE CS
     Hexapep   2 tvIGsnvlIgpfavig 17 
                 ++IG+n+++ p+++i+
  CTQ26788.1  94 IHIGDNCMLAPGVHIY 109
                 4677777777777765 PP

  == domain 2  score: 40.6 bits;  conditional E-value: 2.1e-14
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 ++IG nv+Ig  avi ++V+IGdn++I++g+v+++
  CTQ26788.1 130 VTIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTK 164
                 79*******************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1469.73
//
Query:       CTQ26789.1  [L=72]
Description: modulator of gene expression, with H-NS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-33  114.5   0.3    2.2e-33  114.3   0.3    1.0  1  HHA       Haemolysin expression modulating protein
  ------ inclusion threshold ------
        0.1   12.8   0.0       0.12   12.5   0.0    1.2  1  Pcc1      Transcription factor Pcc1


Domain annotation for each model (and alignments):
>> HHA  Haemolysin expression modulating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.3   2.5e-37   2.2e-33       1      57 []      13      69 ..      13      69 .. 0.99

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 2.5e-37
                HHHHT---HHHHHHHHHHHHHHS-HHHHHHHHHHHTHHHHHHHTTS---S--THHHH CS
         HHA  1 lrlRrcssidtlEkvieklkyeltddEllefysAaDHRrAELvsgkLyDkvPksvWk 57
                +rlRrc++idtlE+viek+kyel+d+El+ fysAaDHR+AEL+++kLyDk+P svWk
  CTQ26789.1 13 MRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPTSVWK 69
                9*******************************************************7 PP

>> Pcc1  Transcription factor Pcc1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.4e-05      0.12      34      68 ..      31      65 ..      15      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
                EEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHH CS
        Pcc1 34 rslslegnvLqveykAttnrmLRvavngfleslgl 68
                 +++l++n L v y+A + r + +++n + + + +
  CTQ26789.1 31 NKYELSDNELAVFYSAADHRLAELTMNKLYDKIPT 65
                4678999**********************998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 534.88
//
Query:       CTQ26790.1  [L=124]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-63  210.0   1.3    1.1e-62  209.8   1.3    1.0  1  YbaJ      Biofilm formation regulator YbaJ
  ------ inclusion threshold ------
      0.039   14.1   0.0      0.047   13.8   0.0    1.1  1  PCNA_C    Proliferating cell nuclear antigen, C-terminal doma


Domain annotation for each model (and alignments):
>> YbaJ  Biofilm formation regulator YbaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.8   1.3   1.2e-66   1.1e-62       1     116 [.       1     116 [.       1     118 [. 0.98

  Alignments for each domain:
  == domain 1  score: 209.8 bits;  conditional E-value: 1.2e-66
        YbaJ   1 mdeyspkrydiaelkylceklydeslavlgesehgwvndptsavnlqlneliehiaafvlnfkikykeesdlseqideylddtyalfssygineadlrk 99 
                 mdeyspkr+dia+l++lce+ly+++la+l+es+hgwvndptsavnlqlneliehia+f+ln+kiky e+++l+ q+deylddt++lfs+ygin++dl+k
  CTQ26790.1   1 MDEYSPKRHDIAQLRFLCETLYHDCLANLEESNHGWVNDPTSAVNLQLNELIEHIATFALNYKIKYAEDNKLIAQVDEYLDDTFTLFSNYGINSTDLQK 99 
                 9************************************************************************************************** PP

        YbaJ 100 wqkskkrlfnilaeekk 116
                 w+ks +rlf++++++++
  CTQ26790.1 100 WKKSGNRLFRCFVNASR 116
                 *************9876 PP

>> PCNA_C  Proliferating cell nuclear antigen, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.3e-06     0.047      53     122 ..      28      99 ..      15     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.3e-06
                 EEEE--BEESSSGGGCBEEEESS-EEE..EEEHHHHHHHGGGGGC-SEEEEEEETTSEEEEEEEETTCEEEE CS
      PCNA_C  53 sivlkqvkdvdkeeeavklelkepvtl..tfalkYlaeftkatsLservtlslssevPlvveykikdvglla 122
                 ++  +++  v+++ +av+l+l+e +++  tfal+Y  +++    L  +v  +l +   l  +y i+++ l++
  CTQ26790.1  28 NLEESNHGWVNDPTSAVNLQLNELIEHiaTFALNYKIKYAEDNKLIAQVDEYLDDTFTLFSNYGINSTDLQK 99 
                 55667788899**************97779*************************9999999*999987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 947.12
//
Query:       CTQ26791.1  [L=1048]
Description: multidrug efflux system protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1440.4  14.6          0 1440.2  14.6    1.0  1  ACR_tran   AcrB/AcrD/AcrF family
    3.2e-09   36.2  28.4    1.3e-06   27.6  12.0    2.4  2  MMPL       MMPL family
    4.9e-06   26.1  26.6     0.0029   17.0   5.1    2.4  2  SecD_SecF  Protein export membrane protein


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1440.2  14.6         0         0       1    1021 []       1    1029 [.       1    1029 [. 1.00

  Alignments for each domain:
  == domain 1  score: 1440.2 bits;  conditional E-value: 0
                  -HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEE.TTSEEEEEEEESTT CS
    ACR_tran    1 iikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqS.seglssitltFedg 96  
                  + +ffi+rpifa+v+a+ii+l+G lsil+lPv+++P+iapp++++++ ypGa++e+v+++vtq++Eq++ng+d l+y+sS+  s+g+++itltFe+g
  CTQ26791.1    1 MPNFFIDRPIFAWVIAIIIMLAGGLSILKLPVAQYPTIAPPAISITAMYPGADAETVQNTVTQVIEQNMNGIDHLMYMSSNGdSTGTATITLTFESG 97  
                  679********************************************************************************************** PP

                  S-HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHH CS
    ACR_tran   97 tdidiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkl 193 
                  td+diA++qvqn+l+ a++ LP+evq++gis++k+sss ++v++v +++g++++ +++d+++ n+kd++sr++GVgdvql+G s++a+riw+dp+kl
  CTQ26791.1   98 TDPDIAQVQVQNKLALATPLLPQEVQQQGISVEKASSSFLMVVGVINTNGTMNQDDISDYVAANMKDPISRTSGVGDVQLFG-SQYAMRIWMDPNKL 193 
                  **********************************************************************************.************** PP

                  HCTT--HHHHHHHHHHHSSB-EEEEE......TT-SB-EEEEESB---SHHHHHTSEEE.ETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEE CS
    ACR_tran  194 aklgltltdvvsalkeqnvnvaaGql......egqeeelliraqgqlqsaediekiivk.nqdgskvrlrDvAkVelgaeeerlaatfngkpavlle 283 
                  ++++lt+ dv+salk+qn++vaaGql      +gq+ +++i+aq++l+++e++++i++k nqdgs+vrlrDvAk+elg e ++++a+fng+pa++l+
  CTQ26791.1  194 NNFQLTPVDVISALKAQNAQVAAGQLggtppvKGQQLNASIIAQTRLTNTEEFGNILLKvNQDGSQVRLRDVAKIELGGESYDVVAKFNGQPASGLG 290 
                  ************************************************************************************************* PP

                  EEEETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ACR_tran  284 vkklpganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalg 380 
                  +k ++gana+++a+a++++l+++++++P+g++iv++yd+t+fv+ si+eVvktL+eai+Lv+lv++lFLqn+ratlip+iavP++llgtfavl+a+g
  CTQ26791.1  291 IKLATGANALDTANAIRAELAKMEPFFPSGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFG 387 
                  ************************************************************************************************* PP

                  --BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  381 fslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlv 477 
                  fs+N+lt+fg+vlAiGl+vDdAiVvvEn+er+++eeg++p+ea++ksm++iqgalv+ia+vl+avf+P++f+gG++G+++rqf++tiv+a++lsvlv
  CTQ26791.1  388 FSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLV 484 
                  ************************************************************************************************* PP

                  HHCCHHHHHHHHS---STT-CT...SHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB CS
    ACR_tran  478 altltPalcallLkerkeekek...kffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgv 571 
                  al+ltPalca++Lk+ +++ ++   +ff +fnr+f++++++Y++++  +lr++ ++l+++l+++v++++lfvr+p++flP+ed+gv++ ++qlp+g+
  CTQ26791.1  485 ALILTPALCATMLKPIQKGSHGattGFFGWFNRMFDKSTHHYTDSVGNILRSTGRYLVLYLIIVVGMAWLFVRLPSSFLPDEDQGVFLSMAQLPAGA 581 
                  *********************99************************************************************************** PP

                  -HHHHHHHHHHHHH.HHH.TTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSS CS
    ACR_tran  572 sleqtqkvlkqvek.ilk.ekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletl 666 
                  ++e+tqkvl+++++ +l+ ek++vesvfav+Gf ++g  +g+n++++f+sLk++++r++ee++vea+++r++  +++i++a+v++++++++ el+t+
  CTQ26791.1  582 TQERTQKVLDEMTNyYLTkEKDNVESVFAVNGFGFAG--RGQNTGIAFVSLKDWSQRPGEENKVEAITARAMGYFSQIKDAMVFAFNLPAIVELGTA 676 
                  **************98888******************..********************************************************** PP

                  SCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTT.EEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEE CS
    ACR_tran  667 sgvrselqvklfgddleaLseaaeqllaalkelpe.lsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvv 762 
                  +g+++el + + g ++e+L++a++ql  +++++p+ l+ vr+++ ed+pq++++id+eka++lGvsisdin+tl +a+ggsyvndfi++gr++kv++
  CTQ26791.1  677 TGFDFELID-QGGLGHEKLTQARNQLFGMVAQHPDvLTGVRPNGLEDTPQFKIDIDQEKAQALGVSISDINTTLGAAWGGSYVNDFIDRGRVKKVYI 772 
                  *********.*************************77************************************************************ PP

                  EE-GGGSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHH CS
    ACR_tran  763 rleedlrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqeqe 859 
                  + e+++r+ ped++k++vr ++g+mvp+sa++++++e+g++++er+ng +s++i+g++a+g+s++ea++ +e++a k  lp+g++++wtg+++qe++
  CTQ26791.1  773 MSEAKYRMLPEDIGKWYVRGSDGQMVPFSAFSTSRWEYGSPRLERYNGLPSLEILGQAAPGKSTGEAMALMEELAGK--LPSGIGYDWTGMSYQERL 867 
                  *****************************************************************************..****************** PP

                  HHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHH CS
    ACR_tran  860 asnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeail 956 
                  ++n++++l+a++l++vfl+Laalyes+s+p++++l+vPl++vGalla+++rgl+++v++qvGl+++iGl++kNail+vefak+l+ekegk l ea+l
  CTQ26791.1  868 SGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGLIEATL 964 
                  ************************************************************************************************* PP

                  HHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  957 eaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlva 1021
                  ea+++RLrPiLMT+la+ilGv+PL++s+gaGs++q+++g++v+gG+vt+t+L++++vPv++v+v+
  CTQ26791.1  965 EAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATILAIFFVPVFFVVVR 1029
                  **************************************************************985 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6  12.0   2.2e-10   1.3e-06     134     302 ..     329     496 ..     292     529 .. 0.80
   2 !   13.9   8.4   3.2e-06     0.019     144     305 ..     871    1031 ..     852    1044 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 2.2e-10
        MMPL 134 ladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRy.reela 231
                 ++++ ++s +++ ++ v +++++++++ + ++++ a l+p + v v ll ++++++    + g+ ++t  +++ +vl+i+  +D a+ +v    r  ++
  CTQ26791.1 329 TTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLA----AFGFSINTL-TMFGMVLAIGLLVDDAIVVVENVeRVMAE 422
                 556677888889999999****************************9999999933....335555544.46799***************998355667 PP

        MMPL 232 agedreeaviravastgkvvtaaGltvaiamlgLvv...arlpvlaqvGvaialGvlvdvlivlTllPAllvll 302
                 +g   +ea  + ++++ ++ ++ ++++ + ++ +++   ++  + +q+ ++i  +++++vl++l l+PAl++++
  CTQ26791.1 423 EGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFfggSTGAIYRQFSITIVSAMALSVLVALILTPALCATM 496
                 89999*********************99999999983335677899*************************984 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3.2e-06
        MMPL  144 dlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreel.aagedreea 239 
                  ++  + +++l+v+++ L+ +y S  +++ ++l+v ++++ al       +    +   f +gll+ +++  ++  a+l+v   ++ + ++g+   ea
  CTQ26791.1  871 QAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA---ATFRGLTNDVYFQVGLLTTIGL--SAKNAILIVEFAKDLMeKEGKGLIEA 962 
                  55667899**************************9999888766...3444445566677777776655..56779**999999876245677778* PP

        MMPL  240 viravastgkvvtaaGltvaiamlgLvvar...lpvlaqvGvaialGvlvdvlivlTllPAllvllGra 305 
                    +av+   + +++  l +++ ++ Lv+++    ++ ++vG+ +  G++ ++ +++ ++P + v++ r+
  CTQ26791.1  963 TLEAVRMRLRPILMTSLAFILGVMPLVISSgagSGAQNAVGTGVMGGMVTATILAIFFVPVFFVVVRRR 1031
                  **************************9975333788889***********************9999888 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4  13.5     3e-06     0.018      33     186 ..     340     496 ..     333     499 .. 0.77
   2 !   17.0   5.1   4.8e-07    0.0029      35     183 ..     874    1025 ..     854    1031 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3e-06
                 HHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH..HHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHH CS
   SecD_SecF  33 avlallialvliliyvalrFewrvalaaiialvhDvii..tvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlsln 129
                 +v  l+ a++l++++++l F +++    i +++  v++  t +vl+++g+ ++  t+ ++   iG  v+d +vv + v+  +  ++  + ke++ +s+ 
  CTQ26791.1 340 VVKTLVEAIILVFLVMYL-FLQNFRATLIPTIAVPVVLlgTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM-AEEGLPPKEATRKSMG 436
                 555566666665555554.5555555556555555544238999**********************************7765.55999*********** PP

                 HHHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHH CS
   SecD_SecF 130 qtLtrtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifiasplllll 186
                 q     +   +++  v + + ++gg    + ++f+++++ ++++ ++ ++ +  +l +++
  CTQ26791.1 437 QIQGALVGIAMVLSAVFIPMAFFGGstgAIYRQFSITIVSAMALSVLVALILTPALCATM 496
                 988866666666667778899999977678899******999999999888888887766 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4.8e-07
                  HHHHHHHHHHHHHHHHHT-.HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHH CS
   SecD_SecF   35 lallialvliliyvalrFe.wrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnq 130 
                     +i+l+++++ +a  +e w++++++++ +   v+ ++ +    g+  d+ + ++lLt iG S ++ +++ +  ++ ++k + + l e++ +++ +
  CTQ26791.1  874 ALYAISLIVVFLCLAALYEsWSIPFSVMLVVPLGVVGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEK-EGKGLIEATLEAVRM 969 
                  3446788888899998997689999999999999999998889999**************************988887776.7778889999***** PP

                  HHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHHHHH CS
   SecD_SecF  131 tLtrtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifiaspll 183 
                   L   ++tsl  +l v+ l++  g   ++ + + + ++ G+++ t+ +if+   + 
  CTQ26791.1  970 RLRPILMTSLAFILGVMPLVISSGagsGAQNAVGTGVMGGMVTATILAIFFVPVFF 1025
                  ********************987765577788888899999999999999866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1048 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1099  (0.0612973); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.50
# Mc/sec: 6360.94
//
Query:       CTQ26792.1  [L=397]
Description: multidrug efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-13   49.0   2.9    6.6e-12   45.1   2.9    2.7  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    1.3e-09   37.8   1.2    2.4e-09   36.9   1.2    1.6  1  HlyD             HlyD membrane-fusion protein of T1SS
    8.8e-09   36.0   4.5    1.7e-06   28.6   0.2    3.3  3  HlyD_3           HlyD family secretion protein
    3.5e-08   33.2   4.5    0.00047   19.9   0.1    3.6  3  Biotin_lipoyl_2  Biotin-lipoyl like


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   2.9   1.5e-15   6.6e-12      17     214 .]      63     293 ..      49     293 .. 0.74

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 1.5e-15
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXX.........................XXXXXXXXXX CS
    HlyD_D23  17 rrlarvsarveGwveklyvnatgdkVkkGqpLaelyspe....lvaaqeeyllalkakkklkkke........................lleaarerLr 87 
                  r+a+v ++v+G + k +   +g+ +++G  L++++         +a+ ++ +a++a                                 ++ a+++  
  CTQ26792.1  63 YRIAEVRPQVSGIILKRNFV-EGSDIQAGVSLYQIDPATyqasYDSAKGDLAKAQAA-------AnmdqltvkryqkllgtkyisqqdyDTAVATAQQS 153
                 689************99999.9***********996543000033444444444442.......22234455667777777778777786666666667 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXX CS
    HlyD_D23  88 llgvseeqiaelektgkvqktvtvkapisGvVteknvreGqyvqpgdt..lftiadlstVWveaevyeqqlalvkvg..........qkvevtvealpg 174
                 +  v +++ a++e  +    +++v++pisG + + +v+eG  vq+g+t  l+t+++l+ ++v++    +++ ++k++           k++v++   +g
  CTQ26792.1 154 NAAVVAAK-AAVETARINLAYTKVTSPISGRIGKSAVTEGALVQNGQTtaLATVQQLDPIYVDVTQSSNDFLRLKQEladgrlkqenGKAKVELVTNDG 251
                 77776666.7888888889999***********************987679***********9988888876665431111222111355555555555 PP

                 X..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 175 k..tfeGkvdyiyptvdpetRtvkvRieldNpdgkLkpgmfA 214
                      +G++++ + tvd++t ++++R+ ++Npd++L pgmf+
  CTQ26792.1 252 LkyPQSGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFV 293
                 422458***********************************7 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   1.2   5.5e-13   2.4e-09       7      79 ..      43     360 ..      37     361 .. 0.76

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 5.5e-13
                 EEEEEE............................................................................................. CS
                 xxxxxx............................................................................................. RF
        HlyD   7 awaala............................................................................................. 12 
                 +++ +a                                                                                             
  CTQ26792.1  43 VTLKSAplqittelpgrtsayriaevrpqvsgiilkrnfvegsdiqagvslyqidpatyqasydsakgdlakaqaaanmdqltvkryqkllgtkyisqq 141
                 555555555555555555555555555555555555555555555555666666666666666666666666666666666666666666666666666 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  CTQ26792.1 142 dydtavataqqsnaavvaakaavetarinlaytkvtspisgrigksavtegalvqngqttalatvqqldpiyvdvtqssndflrlkqeladgrlkqeng 240
                 666666666666666666667777777778888888888888888888888888888888888888888888888888888888888888999999999 PP

                 .....................................................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSBEEEEEEEE CS
                 .....................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  13 .....................................................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispdrvpvrvvv 58 
                                                                      + +l ++ ++++ +v+++++++t +g+++++Vvg +++++ ++v++
  CTQ26792.1 241 kakvelvtndglkypqsgtlefsdvtvdqttgsitlraifpnpdhtllpgmfvRARLEEGINPDALLVPQQGVTRTPRGDASVMVVGEGDKVEVRQVTA 339
                 9999999999999999999999999999999999999999999999999999999******************************************** PP

                 EEEETTEEEESSSS-TTEEEE CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        HlyD  59 ekaqgpyyplriglkagalvr 79 
                  +a g+++ ++ glk g++v+
  CTQ26792.1 340 SQAIGDKWLVTDGLKSGDRVI 360
                 *******************97 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0012       5.3       2      47 ..      68     112 ..      67     167 .. 0.83
   2 !   28.6   0.2   3.9e-10   1.7e-06       1     106 []     175     290 ..     175     290 .. 0.90
   3 ?   -2.1   0.1       1.4   6.2e+03      47      57 ..     364     373 ..     318     389 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadl 47 
                 +r  v+G++ + n  eg+ +qag  l +i p +t+++ +  +  dl
  CTQ26792.1  68 VRPQVSGIILKRNFVEGSDIQAGVSLYQIDP-ATYQASYDSAKGDL 112
                 7889*************************96.66666665555554 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 3.9e-10
      HlyD_3   1 tlrApvdGvvvelnveegevvqagde..lleiippdtllveakvpaadlgsik...........kkgqkvtlkldqgsdytlkgkierisptvdaktga 86 
                 ++++p++G++ +  v+eg  vq+g++  l+++   d + v+++ ++ d  ++k           + ++kv+l  ++g +y+  g++e  + tvd++tg 
  CTQ26792.1 175 KVTSPISGRIGKSAVTEGALVQNGQTtaLATVQQLDPIYVDVTQSSNDFLRLKqeladgrlkqeNGKAKVELVTNDGLKYPQSGTLEFSDVTVDQTTGS 273
                 589*********************9999******999999999999999999999988888855555666666669999******************** PP

      HlyD_3  87 ykvevslenpekksiplkpG 106
                 +++++ ++np   + +l+pG
  CTQ26792.1 274 ITLRAIFPNP---DHTLLPG 290
                 **********...8999888 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.4
      HlyD_3  47 lgsikkkgqkv 57 
                 l++ik +g++v
  CTQ26792.1 364 LQKIK-PGVQV 373
                 33342.33333 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   1.1e-07   0.00047       4      50 .]      67     113 ..      61     119 .. 0.94
   2 ?   -1.4   0.3      0.48   2.2e+03      33      47 ..     138     152 ..     137     163 .. 0.82
   3 !   13.0   0.0   1.5e-05     0.069       3      29 ..     174     200 ..     166     205 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.1e-07
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50 
                      ++ ++vsG + + n  +G  ++aG  L+++D+  +q+  + a+++la
       CTQ26792.1  67 EVRPQVSGIILKRNFVEGSDIQAGVSLYQIDPATYQASYDSAKGDLA 113
                      689*************************************9998875 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.48
  Biotin_lipoyl_2  33 lDsralqlalaqaea 47 
                      + ++++++a+a a++
       CTQ26792.1 138 ISQQDYDTAVATAQQ 152
                      788999999998774 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 1.5e-05
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGdv 29 
                      +++++p+sGr+ + +V++G  V+ G++
       CTQ26792.1 174 TKVTSPISGRIGKSAVTEGALVQNGQT 200
                      589**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2794.91
//
Query:       CTQ26793.1  [L=216]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-52  175.0   0.8    7.7e-52  174.5   0.8    1.2  1  TetR_C_2  MAATS-type transcriptional repressor, C-terminal re
    3.7e-20   71.4   0.0    6.1e-20   70.8   0.0    1.4  1  TetR_N    Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.073   12.9   0.0        0.2   11.5   0.0    1.7  1  DUF4118   Domain of unknown function (DUF4118)


Domain annotation for each model (and alignments):
>> TetR_C_2  MAATS-type transcriptional repressor, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.5   0.8   1.3e-55   7.7e-52       1     121 []      84     204 ..      84     204 .. 0.99

  Alignments for each domain:
  == domain 1  score: 174.5 bits;  conditional E-value: 1.3e-55
    TetR_C_2   1 dPlqvlrelliyvLqsivedprqralleilfhKCEFvgemsavleirkelllaeysrleevlqeciekgllpanldlrraaiilraslsGllenwLfap 99 
                 dPl+v+re+l+yvL+++v+++r+r ++ei++hKCEFvgem+ v++++++l+la+y+r+e++l+eci+++llpanl +rraa+++r++lsGl+enwLfap
  CTQ26793.1  84 DPLSVIREILVYVLEATVTEERRRLMMEIIYHKCEFVGEMTVVQQAQRQLSLASYERIEQTLKECIAAKLLPANLLTRRAAVLMRSYLSGLMENWLFAP 182
                 8************************************************************************************************** PP

    TetR_C_2 100 esfdlkkeaealvdavldmlky 121
                 +sfdl++ea+++v+ +l+m+++
  CTQ26793.1 183 DSFDLHAEARDYVAILLEMYQF 204
                 *******************986 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0     1e-23   6.1e-20       1      47 []      16      62 ..      16      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 1e-23
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                Ild+A++lf+++G ++t+++ IAk+AGv++ga+Y++F++K +L++++
  CTQ26793.1 16 ILDVALRLFSQQGVSSTSLATIAKAAGVTRGAIYWHFKNKSDLFNEI 62
                9*******************************************996 PP

>> DUF4118  Domain of unknown function (DUF4118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.3e-05       0.2      40      81 ..     158     199 ..     148     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.3e-05
     DUF4118  40 llgglgpgllaallsvllfnyfftpPyftltiadpeylltlv 81 
                 ll+ +++ l+ + ls l+ n++f p  f l+++ ++y+  l+
  CTQ26793.1 158 LLTRRAAVLMRSYLSGLMENWLFAPDSFDLHAEARDYVAILL 199
                 67799999999***********************99997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1671.51
//
Query:       CTQ26794.1  [L=1115]
Description: fused conserved hypothetical protein; mechanosensitive channel protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-92  310.4  33.3    1.2e-92  310.4  33.3    2.1  2  MscS_TM       Mechanosensitive ion channel inner membrane dom
    2.7e-65  220.2  60.5    2.7e-65  220.2  60.5    3.1  3  MscS_porin    Mechanosensitive ion channel porin domain
    1.4e-58  197.9   0.4    1.4e-58  197.9   0.4    2.5  2  MS_channel    Mechanosensitive ion channel
  ------ inclusion threshold ------
       0.12   12.2   5.0       0.13   12.2   1.7    2.7  2  DUF1657       Protein of unknown function (DUF1657)
       0.48   10.1   4.4        3.9    7.2   1.3    3.0  2  RPW8          Arabidopsis broad-spectrum mildew resistance pr


Domain annotation for each model (and alignments):
>> MscS_TM  Mechanosensitive ion channel inner membrane domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.4  33.3   3.4e-96   1.2e-92       3     339 .]     503     820 ..     501     820 .. 0.98
   2 ?   -3.8   2.4       1.2   4.4e+03      46      89 ..     848     891 ..     834     900 .. 0.64

  Alignments for each domain:
  == domain 1  score: 310.4 bits;  conditional E-value: 3.4e-96
     MscS_TM   3 lillllllallllllrrrlkrrleklaervgkvkqDsflhTlrallltlllalPlplllaaiglllqeaaqaepfaaalgaallaaalvllvfellral 101
                 + l+lll+a+l+ ++ ++lk + +kla++vg++++D++lhT++a+l+ l+ alP+ ll++aigl+l +++   +++  l+a   ++a+++lvf l++++
  CTQ26794.1 503 AGLPLLLIAGLIRWRLQWLKDYQAKLASQVGQLRNDTQLHTPKAILIDLIRALPVVLLILAIGLILLTMQL--NISGLLWAYSKKLAMFWLVFGLCWKV 599
                 6699*****************************************************************44..46************************ PP

     MscS_TM 102 lrpdGlaerHFgwpkesvrrlrralkrlilvllplllvlilaealsdalardvlGrlaflllllllavflarllrpalglyankkeeeknslrlrrlly 200
                 l ++G+a++HF++p++  +++rr++ r+ l+llpl ++++++e ++ +l++dvlG+l++++ lll+av++++++r+++++++++         lr l  
  CTQ26794.1 600 LEKNGVAVNHFNMPAQLTSHWRRQIVRVSLALLPLNFWSVISELSPLNLMDDVLGQLVIFFNLLLIAVLVWPMCRESWRDKESH--------SLRLLTI 690
                 ************************************************************************************........8****** PP

     MscS_TM 201 lllvlaPlalavlaalGYyyTalqLlerlilslllllllllvyalalRwllvarRRlayerakekRaaalaqrakeeeeeeekkesaeveepeldleai 299
                 ++l ++P+al+vl+a GY+yT+l+L++r+i++++l++++ l+y+++lR+l+va+RR+a++ra+++R++      ke++e++e      +eep+++le++
  CTQ26794.1 691 TVLSIVPVALMVLTATGYFYTTLRLAGRWIETVYLVMIWNLLYQTVLRGLSVAARRIAWRRALARRQHLV----KEGAEGAEP-----QEEPTIALEQV 780
                 *******************************************************************988....888888876.....59********* PP

     MscS_TM 300 saQslrLlrlllllallvglylvWsdllpalsfLdnitLW 339
                 ++Q+lr++ l+++++++v+++++Wsdl++++++Ld+itLW
  CTQ26794.1 781 NQQTLRITMLVMVALFAVMFWAIWSDLITVFAYLDSITLW 820
                 **************************************** PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.2
     MscS_TM  46 allltlllalPlplllaaiglllqeaaqaepfaaalgaallaaa 89 
                 ++ + l+  lP+ l ++++ +l + +++++++++ l  a++a+ 
  CTQ26794.1 848 MVAWALIRNLPGLLEVLVLSRLNMRQGTSYAITTILNYAIIAIG 891
                 46677777777777777777777777666655555555555443 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.2  60.5   7.6e-69   2.7e-65       1     238 []      44     283 ..      44     283 .. 0.98
   2 ?  -15.2  18.8         5   1.8e+04     169     216 ..     347     372 ..     286     456 .. 0.50
   3 ?   -3.5   0.3       1.7     6e+03     192     212 ..     517     537 ..     513     539 .. 0.53

  Alignments for each domain:
  == domain 1  score: 220.2 bits;  conditional E-value: 7.6e-69
  MscS_porin   1 qLdelekakldeaeqkallqdLeqalnlLdkidkskkkaeelqkaiddaPkelrelqqeleal.qkkkeeaskeilaklsleeLeqrllqtssqlqelq 98 
                 qL+ l+k+k+ ++++k ++qdL+q+l+ Ldki++ k+++++l++++++aP++lr++ ++l++l +  +e+a++++l++lsl++Le+r++qt+++lq++q
  CTQ26794.1  44 QLNTLNKQKELTPQDKLVQQDLTQTLETLDKIERIKSETAQLRQQVEQAPAKLRQAVESLNNLsDVPNEDATRKTLSTLSLRQLESRVTQTLDDLQNAQ 142
                 89************************************************************************************************* PP

  MscS_porin  99 eqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLnstaaagealsqaqrtalqaelaaleaqieeleqellsnnnrqeLlklqrdllklriqqle 197
                 ++la++nsqlv+lqt+per+q+++++a+q+lq+irnrLn+t+ ++e l+++q+++lqa++a+l+aqie+++++l++n+ +q+ l++qrd+ ++  ++le
  CTQ26794.1 143 NDLATYNSQLVSLQTQPERVQNAMFNASQQLQQIRNRLNGTSVGDETLRPTQQVLLQAQQALLNAQIEQQRKSLEGNTILQDTLQKQRDYVTAWSNRLE 241
                 *************************************************************************************************** PP

  MscS_porin 198 qelqaLqellnekRlaeaekav..aqteqlaeeaagknPlvqq 238
                 ++lq+Lqe++n+kRl+ +ek++  a t +++++ ++ nPlv+q
  CTQ26794.1 242 HQLQLLQEAVNSKRLTLTEKTAqeAVTPDETAR-IQANPLVKQ 283
                 **********************96666677776.6*****986 PP

  == domain 2  score: -15.2 bits;  conditional E-value: 5
  MscS_porin 169 eqellsnnnrqeLlklqrdllklriqqleqelqaLqellnekRlaeae 216
                 +q l s++ +q+ ++  +dl                      Rl++ e
  CTQ26794.1 347 QQTLPSADELQDMTNRIADL----------------------RLEQFE 372
                 11222222222222222221......................111111 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.7
  MscS_porin 192 riqqleqelqaLqellnekRl 212
                 r+q+l+ +++ L +++ + R 
  CTQ26794.1 517 RLQWLKDYQAKLASQVGQLRN 537
                 455555555555555555554 PP

>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   1.8       3.5   1.3e+04       6      30 ..     557     581 ..     554     582 .. 0.84
   2 !  197.9   0.4   3.8e-62   1.4e-58       2     206 .]     881    1080 ..     880    1080 .. 0.99

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHHHTTT--SCCHHHH CS
  MS_channel   6 iliivvgilivlsllgvnvsallav 30 
                 +++++++i ++l ++  n+s ll++
  CTQ26794.1 557 VVLLILAIGLILLTMQLNISGLLWA 581
                 6788899999999999999999985 PP

  == domain 2  score: 197.9 bits;  conditional E-value: 3.8e-62
                  .HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEH CS
  MS_channel    2 kilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveigdieGtVediglrttkirtfdgrivtiPn 98  
                  +il++ ii++g ++v+  lgv++ +l ++++al+++lg++l++++ n+v+G+i+lfe+p++iGD+v+ig+++GtV +i +r+t+i++fd+++v+iPn
  CTQ26794.1  881 TILNYAIIAIGAMTVFGALGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGTFSGTVSKIRIRATTITDFDRKEVIIPN 977 
                  79*********************************************************************************************** PP

                  HHHHTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-TTS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHH CS
  MS_channel   99 sslvtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlkdkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlri 195 
                  +++vt+  +N+s +++ +r++++ gv+y+sd   l+kv e+l++a+  +p+v +++++ v++++fg+s+l++e+r +v++  ++++  + +e+n+ i
  CTQ26794.1  978 KAFVTERLINWSLSDTVTRVVIRLGVAYGSD---LDKVKEVLLKAAHDHPKVMQEPAPAVFFTTFGASTLDHELRLYVRE--LRDRSYTVDELNRAI 1069
                  *******************************...**********************************************..*************** PP

                  HHHHHHHT--- CS
  MS_channel  196 kkileeegiei 206 
                   + ++e++i+i
  CTQ26794.1 1070 DRLCRENDINI 1080
                  *********86 PP

>> DUF1657  Protein of unknown function (DUF1657)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.39   1.4e+03      23      42 ..      57      76 ..      53      78 .. 0.85
   2 ?   12.2   1.7   3.6e-05      0.13       1      46 [.     131     181 ..     131     182 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.39
     DUF1657 23 edeeAKqmYeqaaeqleevi 42
                +d+  +q  +q  e+l+++ 
  CTQ26794.1 57 QDKLVQQDLTQTLETLDKIE 76
                899999******99999985 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.6e-05
     DUF1657   1 vkqtlAsLKgaqAtLetF.....aLqTedeeAKqmYeqaaeqleeviqdLe 46 
                 v qtl  L+ aq +L t+     +LqT+ e  +++  +a++ql+++ + L+
  CTQ26794.1 131 VTQTLDDLQNAQNDLATYnsqlvSLQTQPERVQNAMFNASQQLQQIRNRLN 181
                 679**************9888889**********************99998 PP

>> RPW8  Arabidopsis broad-spectrum mildew resistance protein RPW8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.3    0.0011       3.9      27     110 ..      55     134 ..      39     159 .. 0.81
   2 ?    2.2   0.1     0.038   1.4e+02      56      88 ..     283     315 ..     273     337 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0011
        RPW8  27 sldfksilkrLestleritPvvkeieklnkeldrpreeieeLkklLekaekLVekcsklkrynvlkkyrYkkklkeLekslrkf 110
                 + + k   ++L +tle+    +++ie+++ e  + r+++e+   +L++a + ++  s +   +  +k + +  l +Le  + + 
  CTQ26794.1  55 TPQDKLVQQDLTQTLET----LDKIERIKSETAQLRQQVEQAPAKLRQAVESLNNLSDVPNEDATRKTLSTLSLRQLESRVTQT 134
                 44445556777777776....689******************************************************988764 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.038
        RPW8  56 keldrpreeieeLkklLekaekLVekcsklkry 88 
                 +eld  ++  e+L++  e++++LV++  ++k +
  CTQ26794.1 283 QELDINHQLSEKLIQATENGNQLVQRNIQVKNW 315
                 566888888899999999999999998888744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1888  (0.105304); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.27s 00:00:01.17 Elapsed: 00:00:00.48
# Mc/sec: 7019.81
//
Query:       CTQ26795.1  [L=299]
Description: putative transposase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-85  283.4   0.1    1.2e-84  283.0   0.1    1.2  1  Transposase_31  Putative transposase, YhgA-like
  ------ inclusion threshold ------
       0.12   12.1   0.2       0.12   12.1   0.2    2.7  3  DUF1127         Domain of unknown function (DUF1127)
       0.28   11.5   7.9       0.73   10.2   1.8    3.5  3  TetR_C_11       Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> Transposase_31  Putative transposase, YhgA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.0   0.1     2e-88   1.2e-84       1     203 [.       7     208 ..       7     209 .. 0.99

  Alignments for each domain:
  == domain 1  score: 283.0 bits;  conditional E-value: 2e-88
  Transposase_31   1 tpHDalfkellsdpetardfleihlpeelkelldletlklesgsfieeelreslsDlLfsvktkegkegyiyvliEhksspdklmafrLlrYava 95 
                     tpHDa+f+++l++++ a+dfl+ +lp+ ++++++l++l+l+sgsf+ee+lr+s+sD+L+s++t++g  gy+y+liEh+s+pdklmafrLlrYa+a
      CTQ26795.1   7 TPHDAVFRQMLMHQAVAKDFLQLYLPAPFLAICELDSLQLVSGSFVEEDLRASYSDILYSLRTRHG-PGYVYALIEHQSTPDKLMAFRLLRYALA 100
                     7****************************************************************9.**************************** PP

  Transposase_31  96 imerhlkakekeklplviplvfYhGeee.wplslslldlfddpelakelykseflLvDltkvpddeilekrrlallllvqkhirqrdlaellkkl 189
                     +m+rhl+a++++ lplv+p++fYhG+ + wp+++++++lf+dp+lak ly+++f+LvDlt++pd++i ++rr+a+l+l+qkhir+rdlael   l
      CTQ26795.1 101 AMQRHLDAGHDT-LPLVVPILFYHGKVSpWPWARNWQQLFADPALAKALYSNDFPLVDLTVMPDNQIARHRRMAMLELLQKHIRHRDLAELQVPL 194
                     ************.********************************************************************************** PP

  Transposase_31 190 velleelekteeql 203
                     + l+++++ te ql
      CTQ26795.1 195 IALMTQGYLTEAQL 208
                     ********999986 PP

>> DUF1127  Domain of unknown function (DUF1127)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   1.2       1.4   8.3e+03       4      10 ..     131     137 ..     129     138 .. 0.59
   2 ?   -2.5   0.3      0.74   4.4e+03       9      19 ..     168     178 ..     166     179 .. 0.77
   3 ?   12.1   0.2     2e-05      0.12       5      27 ..     273     295 ..     269     295 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.4
     DUF1127   4 alrrWrr 10 
                 ++r+W++
  CTQ26795.1 131 WARNWQQ 137
                 6666654 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.74
     DUF1127   9 rrrRrtrreLa 19 
                 r+rR +  eL 
  CTQ26795.1 168 RHRRMAMLELL 178
                 78888988886 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 2e-05
     DUF1127   5 lrrWrrrRrtrreLarLsDreLa 27 
                 + ++   R+t+ eL  LsD+eLa
  CTQ26795.1 273 MLARGLERQTVQELTGLSDEELA 295
                 55556679**************7 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.028   1.7e+02       7      68 ..      52     110 ..      49     112 .. 0.77
   2 ?   -1.1   0.1      0.37   2.2e+03      51      70 ..     165     184 ..     131     204 .. 0.58
   3 ?   10.2   1.8   0.00012      0.73       9      53 ..     206     259 ..     203     287 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.028
   TetR_C_11   7 lrgDLrallralaealaspragallrallaeaqrdpelaealrerlleprraalravlrrAv 68 
                 +++DLra   ++  +l+++++   + al+ e q+ p+   a+r   l+   aa+++ l+ ++
  CTQ26795.1  52 VEEDLRASYSDILYSLRTRHGPGYVYALI-EHQSTPDKLMAFRL--LRYALAAMQRHLDAGH 110
                 689**********9999976666666665.66788888888864..7888888888777765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.37
   TetR_C_11  51 rlleprraalravlrrAvar 70 
                 ++ + rr a+ ++l+  ++ 
  CTQ26795.1 165 QIARHRRMAMLELLQKHIRH 184
                 34444555555555544444 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00012
   TetR_C_11   9 gDLrallralaealaspragallrallaeaqrdpelaealrerl..........l 53 
                 + L +llr + +a ++++ gal+r l+a++ r+ el   + e +           
  CTQ26795.1 206 AQLNTLLRYMLQAGTTEHPGALIRTLAAQSPRHKELMMTIAE-WleekgrkqgqQ 259
                 67999*******************************999999.524444555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2183.43
//
Query:       CTQ26796.1  [L=57]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-24   85.9   0.7    1.3e-24   85.7   0.7    1.1  1  DUF2496    Protein of unknown function (DUF2496)
  ------ inclusion threshold ------
       0.11   12.7   0.0       0.18   11.9   0.0    1.3  1  MbeD_MobD  MbeD/MobD like


Domain annotation for each model (and alignments):
>> DUF2496  Protein of unknown function (DUF2496)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.7   1.5e-28   1.3e-24       1      43 []       2      44 ..       2      44 .. 0.99

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 1.5e-28
     DUF2496  1 sLenApdevkLAVDLIyLLEsneiepevaLaALeIVkrDfekK 43
                sLenA+devkLAVDLI+LLEs++i+++++L+ALeIV+rD+ +K
  CTQ26796.1  2 SLENASDEVKLAVDLIMLLESHQIPAQTVLSALEIVRRDYANK 44
                8****************************************99 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     2e-05      0.18       6      28 ..      28      50 ..      26      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2e-05
   MbeD_MobD  6 kqLLsAlEqLQqdYeqrlqeWes 28
                +  LsAlE   +dY  +l++ es
  CTQ26796.1 28 QTVLSALEIVRRDYANKLKNAES 50
                678***************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 463.13
//
Query:       CTQ26797.1  [L=175]
Description: primosomal replication protein N'' [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-46  157.3  16.7    3.9e-46  157.1  16.7    1.0  1  PriC             Primosomal replication protein priC
     0.0045   16.2   0.0     0.0056   15.9   0.0    1.3  1  Phosphoesterase  Phosphoesterase family
  ------ inclusion threshold ------
        0.1   13.2   1.0       0.79   10.4   0.3    2.4  2  Sas10_Utp3       Sas10/Utp3/C1D family
       0.73   10.2   4.7        3.3    8.1   0.0    3.1  3  CCDC-167         Coiled-coil domain-containing protein 167
        2.2    7.9  15.4       0.11   12.2   7.7    2.3  2  Casc1_N          Cancer susceptibility candidate 1 N-terminus
        4.5    7.6  11.2       0.24   11.7   0.9    3.2  3  Hpt              Hpt domain


Domain annotation for each model (and alignments):
>> PriC  Primosomal replication protein priC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.1  16.7   1.3e-49   3.9e-46       1     172 [.       8     172 ..       8     174 .. 0.98

  Alignments for each domain:
  == domain 1  score: 157.1 bits;  conditional E-value: 1.3e-49
                 HHHHHHHHHHHHHSST..TTTSS---S----SS--S--SSHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSST.. CS
        PriC   1 srLeqqleqLeqqvaqlDqakeeakqarFdrqLFsqrsaklsdYleeiektlkqLekaveenraeqvaflaerlvaqieAlqrelattelrkkeakqkk 99 
                 ++L++ql++L+  va+   a++++ ++rFdrqLF++rs+ ++ Yl+e++++++qL++ave ++  qv ++aerl+aqi+Al+re+at++lr++++++  
  CTQ26797.1   8 QTLNDQLSELSALVAP--LAEHATLSPRFDRQLFHTRSTLMQAYLAEAQHNFNQLRQAVERQQLPQVVWIAERLAAQIAALRRETATWSLRSWDHAS-- 102
                 689*************..******************************************************************************9.. PP

                 ...TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT....T--THHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PriC 100 ksrkkshqlyqelakhqeyerrLeemiaereqqlekaqslaekqklqqeilaleqRlgRCrqaiskiEerier 172
                     + +++++++ +hqeyerrL++m ++r++q+++a+sl+e+q+l +e++a+ +Rl+RCrqa++kiE+ ++r
  CTQ26797.1 103 ---PTLSRWQRRRLQHQEYERRLLAMRDQRQRQQAQATSLDEQQRLGKEVEAYSGRLARCRQALDKIENVLAR 172
                 ...7899**************************************************************9987 PP

>> Phosphoesterase  Phosphoesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.9e-06    0.0056     208     249 ..      37      80 ..      15     111 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.9e-06
  Phosphoesterase 208 klearrkalkqlglaakq..lekfkkdvkngkLPqvsfikpnga 249
                      +l + r+ l q+ la++q  +++++++v+ ++LPqv++i  + a
       CTQ26797.1  37 QLFHTRSTLMQAYLAEAQhnFNQLRQAVERQQLPQVVWIAERLA 80 
                      55556677777777776668*******************98874 PP

>> Sas10_Utp3  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00026      0.79       1      54 [.       7      51 ..       7      80 .. 0.81
   2 ?    0.9   0.0      0.24   7.3e+02      76      87 .]     154     165 ..     133     165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
  Sas10_Utp3  1 leslsksldelqeslepllskakaee..kkslsdeklsegisllslKnelllaYll 54
                l++l+++l+el+++++pl ++a+ +   +            +l  ++  l+ aYl+
  CTQ26797.1  7 LQTLNDQLSELSALVAPLAEHATLSPrfD-----------RQLFHTRSTLMQAYLA 51
                89*****************9755444432...........2488888888888886 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.24
  Sas10_Utp3  76 keLvrlRvyleK 87 
                  +L r+R+ l+K
  CTQ26797.1 154 GRLARCRQALDK 165
                 699******998 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.065   1.9e+02      37      73 ..      36      72 ..       5      90 .. 0.78
   2 ?   -0.1   0.3      0.41   1.2e+03      52      70 ..     116     134 ..     103     142 .. 0.73
   3 ?    8.1   0.0    0.0011       3.3       4      28 ..     147     171 ..     144     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.065
    CCDC-167 37 ResleeEeaslkeqleenekeLksLrkeNrksmllsv 73
                R+ + +  + ++  l e + + ++Lr+   ++ l+ v
  CTQ26797.1 36 RQLFHTRSTLMQAYLAEAQHNFNQLRQAVERQQLPQV 72
                6677777788888999999999999998888777765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.41
    CCDC-167  52 eenekeLksLrkeNrksml 70 
                 +e+e++L  +r + +++ +
  CTQ26797.1 116 QEYERRLLAMRDQRQRQQA 134
                 6777777777777666554 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0011
    CCDC-167   4 seIdkleeklascrerLeaverrlr 28 
                 +e++    +la+cr+ L+++e+ l 
  CTQ26797.1 147 KEVEAYSGRLARCRQALDKIENVLA 171
                 7999999**************9775 PP

>> Casc1_N  Cancer susceptibility candidate 1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.6      0.17   5.1e+02      35      51 ..      56      72 ..      25     107 .. 0.59
   2 ?   12.2   7.7   3.6e-05      0.11       8      64 ..     110     168 ..     103     173 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.17
     Casc1_N 35 aaeqarrkeeleelkpl 51
                + +q r ++e ++l ++
  CTQ26797.1 56 NFNQLRQAVERQQLPQV 72
                33344444444444444 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.6e-05
     Casc1_N   8 eeRlraeeeererleeerrekeereql..aaeqarrkeeleelkplleerkealeklka 64 
                 ++Rl+ +e er+ l+ + ++++++ q+    eq+r+ +e+e     l+++++al k+++
  CTQ26797.1 110 RRRLQHQEYERRLLAMRDQRQRQQAQAtsLDEQQRLGKEVEAYSGRLARCRQALDKIEN 168
                 578998885555555555555555555599**************************987 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.43   1.3e+03       6      21 ..       6      21 ..       2      39 .. 0.62
   2 ?   11.7   0.9   8.1e-05      0.24       2      36 ..      45      79 ..      44      89 .. 0.87
   3 ?    1.1   0.8      0.16   4.8e+02      45      81 ..     139     172 ..     117     175 .] 0.64

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.43
                HHHHHHHHHHHHHHHH CS
         Hpt  6 fleeaeelleqleqal 21
                +l+++ ++l +l +++
  CTQ26797.1  6 LLQTLNDQLSELSALV 21
                4555555555554444 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 8.1e-05
                HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH CS
         Hpt  2 llelfleeaeelleqleqaldqedlqelaraaHtL 36
                l++++l+ea+  ++ql+qa+++++l ++  +a +L
  CTQ26797.1 45 LMQAYLAEAQHNFNQLRQAVERQQLPQVVWIAERL 79
                789**********************9976665555 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.16
                 BHHHHHHHHHHHHHHHHCTSCHHHHHHHHHHHHHHHH CS
         Hpt  45 ltelaelahelEdlldragelelepellealkallea 81 
                 l+e ++l +e+E     +g+l+ ++++l+ +++ l++
  CTQ26797.1 139 LDEQQRLGKEVEA---YSGRLARCRQALDKIENVLAR 172
                 4444555555555...446666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1415  (0.0789224); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1451.37
//
Query:       CTQ26798.1  [L=125]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-42  142.0  14.8    8.6e-42  141.8  14.8    1.0  1  DUF454        Protein of unknown function (DUF454)
  ------ inclusion threshold ------
        1.6    9.0  12.3        2.1    8.6   1.1    2.1  2  VirB3         Type IV secretory pathway, VirB3-like protein


Domain annotation for each model (and alignments):
>> DUF454  Protein of unknown function (DUF454)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8  14.8   9.6e-46   8.6e-42       3     114 ..       5     116 ..       3     117 .. 0.98

  Alignments for each domain:
  == domain 1  score: 141.8 bits;  conditional E-value: 9.6e-46
      DUF454   3 lllllGllslalGviGivlPlLPTtpFlLlAafcfarssprlhrwLlehklfgpyirdwrekraitlkaKvialllmllsllislllveslwvkillal 101
                 +l+++G+l++alG++G++lPlLPTtpF+LlAa+cfarsspr+h+wLl +++fg y+r+w++ ra+++ aK +a+++++++++isl+lv+ +wv+i+l++
  CTQ26798.1   5 ILTIIGWLAVALGTLGVFLPLLPTTPFILLAAWCFARSSPRFHQWLLYRSWFGGYLRHWQQYRAMPRGAKPRAIAMIVVTFAISLWLVKLTWVRIMLLV 103
                 789************************************************************************************************ PP

      DUF454 102 vllvvllyilrip 114
                 +l+++l++++rip
  CTQ26798.1 104 ILACLLIFMWRIP 116
                 ***********98 PP

>> VirB3  Type IV secretory pathway, VirB3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.1   0.00024       2.1      23      72 ..       4      55 ..       1      67 [. 0.68
   2 ?    5.5   4.3    0.0021        19      19      56 ..      75     115 ..      72     123 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00024
       VirB3 23 vllnllvsvilfl..vglslwillllvplhlvlrliakrDpqmfrvlllrlk 72
                v+l+++  + ++l  +g+ l +l + ++++l+++  a++ p++ + ll r  
  CTQ26798.1  4 VILTIIGWLAVALgtLGVFLPLLPTTPFILLAAWCFARSSPRFHQWLLYRSW 55
                444444444444433777777888899**************99988866655 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0021
       VirB3  19 plelvllnllvsvilfl...vglslwillllvplhlvlrli 56 
                 p+  +++++ +++ l+l    ++++++l++l  l++++++i
  CTQ26798.1  75 PRAIAMIVVTFAISLWLvklTWVRIMLLVILACLLIFMWRI 115
                 66777888888888888777777777777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1134  (0.0632495); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 937.45
//
Query:       CTQ26799.1  [L=183]
Description: adenine phosphoribosyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-15   56.6   0.0    2.6e-15   56.3   0.0    1.1  1  Pribosyltran  Phosphoribosyl transferase domain
     0.0022   17.5   0.0     0.0028   17.1   0.0    1.2  1  UPRTase       Uracil phosphoribosyltransferase
  ------ inclusion threshold ------
       0.11   12.0   0.0       0.18   11.3   0.0    1.3  1  PRTase_2      Phosphoribosyl transferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   4.4e-19   2.6e-15       2     123 ..      31     155 ..      30     176 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 4.4e-19
                   HHHTTT---EEEEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE...............EE----TTSEEE CS
  Pribosyltran   2 gsellenpaildavarlaaeileeyngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdes.......rlledpagkkVl 91 
                   +++lle p++++   +l+ e++++    ++ vvg + +G+ f+  +a +L+v ++ vrk ++ p  +   +  ++          +  +++ g kVl
    CTQ26799.1  31 VTSLLEDPKAYALSIELLTERYKD--AGITKVVGTEARGFLFGAPVALALGVGFVPVRKPRKLPRETIAETYELE--YgtdqleiHVDAIKPGDKVL 123
                   5789999*****************..99************************************99999986554..35699*************** PP

                   EE-SEESSSHHHHHHHHHHHCC-BSEEEEEEE CS
  Pribosyltran  92 iVDDildtGgTllaalelLkekgpeevriavl 123
                   +VDD+l+tGgT+ a+++l+++ g e+  +a +
    CTQ26799.1 124 VVDDLLATGGTIDATVKLIRRLGGEVHDAAFI 155
                   ***********************986555555 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.7e-07    0.0028     120     157 ..     118     155 ..      83     170 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.7e-07
     UPRTase 120 aertvlllDpviaTGgsaaaaiqlLkergvgeekIlvl 157
                   ++vl++D ++aTGg++ a ++l+++ g ++++  ++
  CTQ26799.1 118 PGDKVLVVDDLLATGGTIDATVKLIRRLGGEVHDAAFI 155
                 3456***********************99998876665 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     3e-05      0.18     116     166 ..     114     166 ..     104     177 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3e-05
    PRTase_2 116 ellaaakelvLvDDEistGktalnliralqek..lprkryvvvslvdwrseed 166
                 ++++  +++++vDD ++tG t+ ++++ +++     ++   +++l d+  e++
  CTQ26799.1 114 DAIKPGDKVLVVDDLLATGGTIDATVKLIRRLggEVHDAAFIINLFDLGGEQR 166
                 5667778999************9999999998434458899999999988874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1381.18
//
Query:       CTQ26800.1  [L=635]
Description: DNA polymerase III/DNA elongation factor III, tau and gamma subunits [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-58  197.1   1.9    3.9e-58  195.5   1.9    1.9  1  DNA_pol3_tau_5   DNA polymerase III tau subunit V interacting
    3.2e-42  144.1   0.0      5e-42  143.5   0.0    1.3  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
    1.2e-32  112.8   2.9    3.6e-32  111.2   0.7    2.8  3  DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau do
    3.7e-21   75.4  11.0    3.7e-21   75.4  11.0    2.5  2  DNA_pol3_tau_4   DNA polymerase III subunits tau domain IV Dn
    3.6e-11   43.6   0.0    8.3e-11   42.4   0.0    1.6  1  AAA              ATPase family associated with various cellul
    3.1e-06   27.0   0.0    0.00018   21.3   0.0    2.4  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    3.6e-05   23.8   0.0    9.1e-05   22.5   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
    5.5e-05   23.5   0.5    0.00031   21.0   0.0    2.4  2  AAA_22           AAA domain
    0.00088   19.1   0.1     0.0017   18.1   0.1    1.4  1  DNA_pol3_delta   DNA polymerase III, delta subunit
     0.0012   18.9   0.1       0.19   11.7   0.0    2.3  2  ResIII           Type III restriction enzyme, res subunit
     0.0021   18.6   0.0     0.0051   17.3   0.0    1.6  1  AAA_18           AAA domain
     0.0029   18.0   0.3     0.0029   18.0   0.3    3.9  2  AAA_16           AAA ATPase domain
     0.0065   16.2   0.0      0.028   14.1   0.0    1.9  1  AAA_30           AAA domain
     0.0067   15.7   0.1       0.72    9.0   0.0    2.3  2  TIP49            TIP49 P-loop domain
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.034   14.2   0.0    1.6  1  AAA_14           AAA domain
      0.034   13.7   0.0        1.6    8.2   0.0    2.3  2  AAA_7            P-loop containing dynein motor region
      0.092   13.1   2.2       0.14   12.5   0.2    2.4  2  AAA_assoc_2      AAA C-terminal domain
      0.094   11.9   0.0       0.15   11.2   0.0    1.2  1  PIF1             PIF1-like helicase
        0.1   12.3   0.0       0.18   11.5   0.0    1.3  1  AAA_24           AAA domain
       0.11   12.5   0.1       0.29   11.1   0.1    1.7  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro


Domain annotation for each model (and alignments):
>> DNA_pol3_tau_5  DNA polymerase III tau subunit V interacting with alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5   1.9   4.4e-61   3.9e-58       1     142 []     492     632 ..     492     632 .. 0.99

  Alignments for each domain:
  == domain 1  score: 195.5 bits;  conditional E-value: 4.4e-61
                     XXXS-SSHHHHHHHHHHHHHH-HHHHHHHHHT--SHHHHHHHTEEEEE-SSE.EEEEE-GGGTTT--HHHHHHHHHHHHHHHSS--EEEEEE--- CS
  DNA_pol3_tau_5   1 alehektpelaaklieealerdeWaaeieklklpklvkqlalnsvleqkeedkilLhlrssqkhLnsdsaqkeLaeaLsellgkeveleitlddd 95 
                     aleh ktpelaakl+eea+erd+Waae+++l +pklv+q+aln+++eq e+++++Lhlr+sq+hLns+saq++LaeaL  l+g +vel+i++dd+
      CTQ26800.1 492 ALEHVKTPELAAKLAEEAVERDSWAAEVSQLAVPKLVEQVALNAWKEQ-EGSRVCLHLRPSQRHLNSASAQQKLAEALGVLYGTPVELTIVEDDN 585
                     89**********************************************.9********************************************* PP

                     TSS--HHHHHHHHHHHHHHHHHHHHHHT-SXXXXXXXXXXXXXXXXX CS
  DNA_pol3_tau_5  96 eeqkTPlelrqaiyeekleqAkqsleaDkkvqllqqrFdAeldedsi 142
                     ++++TPle+rqaiyeekl+qA+++++aD+++q+l+++FdA+lde+si
      CTQ26800.1 586 PAMRTPLEWRQAIYEEKLAQAREAIIADNNIQTLRRFFDADLDEESI 632
                     **********************************************9 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5   0.0   5.5e-45     5e-42       1     162 [.      20     178 ..      20     179 .. 0.98

  Alignments for each domain:
  == domain 1  score: 143.5 bits;  conditional E-value: 5.5e-45
  DNA_pol3_delta2   1 gqeealkilskalksgrlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqireliee 94 
                      gqe++l+ l + l+ gr++hayLf+G++g+gk ++a  lak l+ce + + +pcg c++c++ieqg + D+i i+  ++    k+++ r+l ++
       CTQ26800.1  20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR---TKVEDTRDLLDN 110
                      69999**********************************************************************9999...9*********** PP

  DNA_pol3_delta2  95 lsrkpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfspl 162
                      ++  p  ++ k+++i+++ ++++++ NalLktlEEP++++ f+L t+d++kl  ti SRc ++++++l
       CTQ26800.1 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKAL 178
                      ****************************************************************9976 PP

>> DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.4   1.3e+03      89     107 ..     160     178 ..     123     190 .. 0.76
   2 ?   -2.3   0.0       4.3   3.9e+03      16      44 ..     200     228 ..     184     228 .. 0.83
   3 !  111.2   0.7   4.1e-35   3.6e-32       1     136 [.     232     361 ..     232     372 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.4
  DNA_pol3_gamma3  89 eklsleqLqrlWqlllkgi 107
                      +kl+++ L+r+ q+ lk++
       CTQ26800.1 160 QKLPVTILSRCLQFHLKAL 178
                      7999999*******99997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.3
  DNA_pol3_gamma3  16 arlldlleallegdaaaalaelreqyaaG 44 
                       r l+ll+  ++g  ++al  +++++a+G
       CTQ26800.1 200 PRALQLLSRAADGSLRDALSLTDQAIASG 228
                      57789999999999999999999999887 PP

  == domain 3  score: 111.2 bits;  conditional E-value: 4.1e-35
  DNA_pol3_gamma3   1 vsaaqVrdmLGladrarlldlleallegdaaaalaelreqyaaGadpvvvlrdLlellhqltllkvlp.eaaedlslpeeererlkelaeklsl 93 
                      ++aa+V++mLG++d ++ l+l+eal++ d ++++a +++++a+G++++++l ++ +llh++++++++p + ++d    ++ + r++ela+++++
       CTQ26800.1 232 LTAASVSTMLGTLDDDQALSLIEALVAADGERVMAGVNDAAARGVEWEALLVEMQSLLHRIAMVQLSPsALGAD---MAAVEVRMRELARTVPP 322
                      5899****************************************************************333443...5778899********** PP

  DNA_pol3_gamma3  94 eqLqrlWqlllkgieevknapdpraaaEmvLlRlaaaaslptp 136
                       ++q+++q ll g++e++ apd+r+++Em+LlR++a+    +p
       CTQ26800.1 323 GDVQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF----HP 361
                      **********************************994....33 PP

>> DNA_pol3_tau_4  DNA polymerase III subunits tau domain IV DnaB-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       7.8     7e+03      60      75 ..       9      25 ..       7      26 .. 0.70
   2 !   75.4  11.0   4.2e-24   3.7e-21       2      81 .]     410     490 ..     409     490 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 7.8
  DNA_pol3_tau_4 60 rWkptq.kveeekkkev 75
                    +W+p++ + +  +++++
      CTQ26800.1  9 KWRPQTfADVVGQEHVL 25
                    7****975556666665 PP

  == domain 2  score: 75.4 bits;  conditional E-value: 4.2e-24
  DNA_pol3_tau_4   2 qlareqketktKKseaAs...akpv.esvLeRlAsvteraaqvspasasaeqeekpekkeaYrWkptqkveeekkkevTPkaLk 81 
                     +l+r+q++t++KKse+A+   a+pv +++LeRl+s+ter+ q++pa+a+ eq+  p+kkeaYrWk+t++vee+k +++TPkaLk
      CTQ26800.1 410 HLQRSQGATTPKKSEPAAatrARPVnNAALERLSSITERV-QARPAAAALEQA--PAKKEAYRWKATTVVEESKVEVATPKALK 490
                     799***************99*****999************.**********66..999*************************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   9.3e-14   8.3e-11       2     125 ..      42     171 ..      41     176 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 9.3e-14
                 EEESSTTSSHHHHHHHHHHHHTHE........................EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS...TSEEEEEETGGGHHHH CS
         AAA   2 llyGppGtGKTllakavakelgve........................fleisgsellskyvgesekkirelfkeakeka...kpsilfiDEidalaks 73 
                 l++G+ G+GKT++a+ +ak l+ e                        ++ei++++ +      + +++r+l+++++      + ++ +iDE++ l ++
  CTQ26800.1  42 LFSGTRGVGKTSIARLLAKGLNCEtgitatpcgvcdncreieqgrfvdLIEIDAASRT------KVEDTRDLLDNVQYAPargRFKVYLIDEVHMLSRH 134
                 89******************97555555666777777666667776668888888888......566666666665433345356***********999 PP

                 HTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSS CS
         AAA  74 rsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfd 125
                 +            n+Ll+ l++      +v +++at++p+kl+  +l +R+ 
  CTQ26800.1 135 S-----------FNALLKTLEEPPA---HVKFLLATTDPQKLPVTIL-SRCL 171
                 9...........***********99...5******************.9985 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     2e-07   0.00018       2      68 ..      11      73 ..      10      83 .. 0.87
   2 ?    3.1   0.0     0.077        69      85     110 ..     120     145 ..      90     154 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2e-07
      RuvB_N  2 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPv 68
                rP+++++ +gqe+v + l+  ++  +         l++G  G+Gkt++a+++ak l+ +  it++P 
  CTQ26800.1 11 RPQTFADVVGQEHVLTALANGLSLGRI----HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73
                9*************9998776665544....445799***********************9999995 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.077
      RuvB_N  85 kdvlfideihrlsraveevlysamed 110
                  +v +ide+h lsr+  + l +++e+
  CTQ26800.1 120 FKVYLIDEVHMLSRHSFNALLKTLEE 145
                 47999*********999999888875 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     1e-07   9.1e-05       3      95 ..      42     149 ..      40     162 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1e-07
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT-..-HHHHH--B--................--------......G-SEEEEESGGG--HHHHHHHH CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdt..teedlkgrreik......ngttslvd.splvraar......egeilvlDEveraesevlnsLl 86 
                 l  G  G+gK+++a+ la+ ln+e+ + + + +   + +++ ++r ++       ++t+ +d   l ++++      + +++++DEv++++++ +n+Ll
  CTQ26800.1  42 LFSGTRGVGKTSIARLLAKGLNCETGITATPCGVcdNCREIEQGRFVDlieidaASRTKVEDtRDLLDNVQyapargRFKVYLIDEVHMLSRHSFNALL 140
                 56799****************66666555544432255667777666666666955555554257888888888879999******************* PP

                 HHHHSSEEE CS
       AAA_5  87 slleerrll 95 
                 + lee   +
  CTQ26800.1 141 KTLEEPPAH 149
                 ****97666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   3.5e-07   0.00031       9     128 ..      42     155 ..      38     160 .. 0.80
   2 ?   -1.5   0.0       3.1   2.7e+03      56      99 ..     560     614 ..     526     629 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.5e-07
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdl.lrellralglelka..erlsseellealeqalraravielliiDEaqhl 103
                 +  G  G+GKT  +r l++ l+        + + ++ t+ + + + +++   +++  ++ ++ +  +  ++++ll+ ++ a  + +  ++ +iDE++ l
  CTQ26800.1  42 LFSGTRGVGKTSIARLLAKGLN--------CETGITATPCGVCdNCREIeQGRFVDLIEIDAASrtKVEDTRDLLDNVQYAPARGRF-KVYLIDEVHML 131
                 56799****************6........888888888888878888877777777777777777778999999999888888888.9********** PP

      AAA_22 104 rseealeeLrsllnlsrkgvqliLv 128
                  s   ++ L + l+    +v+++L+
  CTQ26800.1 132 -SRHSFNALLKTLEEPPAHVKFLLA 155
                 .999999996666646677777665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.1
      AAA_22  56 llrellralglelka............erlsseellealeqalraravielliiDE 99 
                   ++l++alg+   +            +  +  e ++a+++   a+a+ e++i D+
  CTQ26800.1 560 AQQKLAEALGVLYGTpveltiveddnpAMRTPLEWRQAIYEEKLAQAR-EAIIADN 614
                 455555555544444555555555555566666777888888888888.8888885 PP

>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   1.9e-06    0.0017      75     164 ..     131     216 ..     121     220 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.9e-06
                     S-TTHHHHHHHHTTT--SSEEEEEEES.S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHH CS
  DNA_pol3_delta  75 lnekllkeLeeylsnlpedtlLiliapkklderkklvklLkkkatvveaktlkeeelkkwiqkraqelglkiekealelLlelvennlsa 164
                     l+ +  ++L ++l+++p+++ ++l ++    + +kl  ++ ++   ++ k l+ e+++++++ ++ e+++ +e+ al+lL  +  ++l+ 
      CTQ26800.1 131 LSRHSFNALLKTLEEPPAHVKFLLATT----DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILGEEQIAFEPRALQLLSRAADGSLRD 216
                     56788899*****************99....355655555557999**********************************9999988875 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.031        28       8      48 ..      21      62 ..      17      71 .. 0.81
   2 !   11.7   0.0   0.00021      0.19     111     159 ..      93     145 ..      76     157 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.031
                HHHHHHHHT.......TTSEEEEEESTTSTHHHHHHHHHHHH CS
      ResIII  8 Qeeaienlleklks.krdkrglikmaTGtGKTlvaaklierl 48
                Qe+++++l++ l+  + ++ +l+  + G+GKT +a  l++ l
  CTQ26800.1 21 QEHVLTALANGLSLgRIHHAYLFSGTRGVGKTSIARLLAKGL 62
                8888888888776545667899***********998777655 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00021
                 HHHHHHTH.............HHHTTT-SEEEEETGGGTTS.TTTHHHHHT--- CS
      ResIII 111 iqsldadseee.....eeeseellrdrfdviiiDEaHrlgakkswreilekfke 159
                 i+++++ + e+     ++ +    r+rf+v++iDE+H l++ +s++++l+ ++e
  CTQ26800.1  93 IDAASRTKVEDtrdllDNVQYAPARGRFKVYLIDEVHMLSR-HSFNALLKTLEE 145
                 444444444446777788899999*****************.999999887755 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.7e-06    0.0051       3      80 ..      43     126 ..      42     147 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.7e-06
      AAA_18   3 ltGtpGvGKttlakeLskrlgf...........gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvid 80 
                  +Gt GvGKt++a+ L+k l++            +n+r++ + +      + +a +++k++d+     lld+++ +++ ++  k+++id
  CTQ26800.1  43 FSGTRGVGKTSIARLLAKGLNCetgitatpcgvCDNCREIEQGRFVD-LIEIDAASRTKVEDTRD---LLDNVQYAPA-RGRFKVYLID 126
                 68*****************9999988888887766666666554433.33333346666666555...5555555544.5555555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3   3.2e-06    0.0029       3      63 ..      19      79 ..      17     155 .. 0.61
   2 ?   -0.6   0.2       1.6   1.5e+03      73     107 ..     180     224 ..     148     292 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.2e-06
      AAA_16  3 vGReeeleqLlsalervrsgrp.elvllsGesGvGKsslvrellralekdggif..lrgkcdql 63
                vG e+ l +L++ l+    gr  ++ l+sG +GvGK+s++r l++ l+ + gi+    g cd +
  CTQ26800.1 19 VGQEHVLTALANGLS---LGRIhHAYLFSGTRGVGKTSIARLLAKGLNCETGITatPCGVCDNC 79
                566666666666555...4444589*******************98887755554455666666 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.6
      AAA_16  73 aqalareellrqlldeaesaeleawrekleeala.............a 107
                 ++++ r + l+ +l e++  ++e+ + +l++++a             a
  CTQ26800.1 180 VEQI-R-HQLEHILGEEQI-AFEPRALQLLSRAAdgslrdalsltdqA 224
                 4444.4.444444444333.3444444444444433333333333330 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   3.1e-05     0.028      22     119 ..      42     150 ..      21     165 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
      AAA_30  22 vltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLae..............elgieastiakllkrlkgrarlepg.tllivDEagmvdtkq 104
                 +  G  G GKt + + l++ ++ + g   i ++p g   ++ +e              ++ ++ + +  ll++ +  a  + + +++++DE+ m++ ++
  CTQ26800.1  42 LFSGTRGVGKTSIARLLAKGLNCEtG---ITATPCGV-CDNCREieqgrfvdlieidaASRTKVEDTRDLLDNVQY-APARGRfKVYLIDEVHMLSRHS 135
                 67899999999999999999998866...33333332.22222211122233221111333455555555544443.3444556*************** PP

      AAA_30 105 laallkaaekagakv 119
                 ++allk +e+  a+v
  CTQ26800.1 136 FNALLKTLEEPPAHV 150
                 ********9954444 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.022        20      47      78 ..      36      66 ..      11      74 .. 0.77
   2 !    9.0   0.0   0.00081      0.72     281     309 ..     122     150 ..      81     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.022
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 47 klaGravLlaGpsgtGktalaiaiskelgedv 78
                ++  +a L++G +g Gkt++a  ++k l+ ++
  CTQ26800.1 36 RIH-HAYLFSGTRGVGKTSIARLLAKGLNCET 66
                444.688******************9998766 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00081
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 281 vlfiDevhmlDiecfsylnraleselaPi 309
                 v  iDevhml   +f  l ++le++ a +
  CTQ26800.1 122 VYLIDEVHMLSRHSFNALLKTLEEPPAHV 150
                 789********************998876 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.8e-05     0.034       4      86 ..      40     143 ..      38     167 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.8e-05
      AAA_14   4 ilvitGaRrvGKTtllkqlikell................vkkesilyinldderdkkladpe...kllelilek.lkeekktylflDEiqev..pewe 80 
                 +++ +G R vGKT +++ l+k l                  + e+  +++l + + +++++ e   +ll+ ++   ++  + ++ ++DE++++   ++ 
  CTQ26800.1  40 AYLFSGTRGVGKTSIARLLAKGLNcetgitatpcgvcdncREIEQGRFVDLIEIDAASRTKVEdtrDLLDNVQYApAR-GRFKVYLIDEVHMLsrHSFN 137
                 67889***************9999998888888887777744555555555555554433333111444444444233.47788999999998332344 PP

      AAA_14  81 kalksl 86 
                   lk l
  CTQ26800.1 138 ALLKTL 143
                 444444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0018       1.6      32      60 ..      37      65 ..      25      74 .. 0.85
   2 ?    2.9   0.0     0.075        67      92     118 ..     111     137 ..      80     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0018
       AAA_7 32 nkkpvllvGptGtGKtviikdllkkldke 60
                 ++  l+ G+ G+GKt+i++ l k l+ e
  CTQ26800.1 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
                67899**************9999988855 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.075
       AAA_7  92 gvygPpggkklvvFvDDlnmpakekyg 118
                   y P+ g+  v+ +D+++m  +  ++
  CTQ26800.1 111 VQYAPARGRFKVYLIDEVHMLSRHSFN 137
                 479*****************9988776 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   0.00016      0.14       2      40 ..     193     231 ..     192     269 .. 0.82
   2 ?   -1.4   0.1       3.5   3.2e+03      23      55 ..     451     485 ..     433     514 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00016
                  XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX. CS
  AAA_assoc_2   2 ekklkleddalealaeladGDaRkaLnlLElaaeaaeak 40 
                  e+++++e+ al++l ++adG  R aL l + a+++ e +
   CTQ26800.1 193 EEQIAFEPRALQLLSRAADGSLRDALSLTDQAIASGEGQ 231
                  57899*************************999887653 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.5
                  XXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXX CS
  AAA_assoc_2  23 aRkaLnlLElaaeaaeak..egkieitledleeal 55 
                  aR a  +LE a +++ea   + +++++++++e a+
   CTQ26800.1 451 ARPAAAALEQAPAKKEAYrwKATTVVEESKVEVAT 485
                  66777777766655555466333344444443333 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017      0.15      22     127 ..      38     144 ..      19     148 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
                 TS-EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEESSHHHHH..CC.TSEECHHHHT-TT..SSS-HHHHHHHTSCCCHHHHHC-SEEEEECGGGSBH CS
        PIF1  22 gklfFvtGsgGtgKtflwkallkklrsegkivlavAssGvAal..llegGrtahsrfkipl..ekdeestckikrgsklaellkktsliiwDEapmver 116
                  +   ++G  G gKt + + l k l+ e  i++    +Gv  +   +e+Gr +  + +i+   +++ e+t ++  + + a    + ++ ++DE+ m++r
  CTQ26800.1  38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITA--TPCGVCDNcrEIEQGRFVD-LIEIDAasRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR 133
                 4455689******************99966555..4688875422788888765.34444310333344446666777777777899************ PP

                 HHHHHHHHHHH CS
        PIF1 117 ecfealdrtlr 127
                 + f+al +tl 
  CTQ26800.1 134 HSFNALLKTLE 144
                 ******98875 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0002      0.18       8      85 ..      44     139 ..      40     147 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
      AAA_24   8 yGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie...................swedfldevvel..aaeladyktlviDtideleelclaev 85 
                  G  g+GKT++a+ l   +  +++e G  ++     ++++                   ++ed +d ++ +  a +  ++k++ iD +  l ++ ++ +
  CTQ26800.1  44 SGTRGVGKTSIARLL---AKGLNCETGITATPCGVCDNCReieqgrfvdlieidaasrtKVEDTRDLLDNVqyAPARGRFKVYLIDEVHMLSRHSFNAL 139
                 5999***********...6678999999999999999999887888888888888888866666666555576677777**********9999887765 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00033      0.29      18      48 ..      37      68 ..      19      75 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00033
                HTEEEEEEESTTSSHHHHHHHHHHHTT--.-- CS
        TsaE 18 lgdvilLeGdLGaGKTtlvrglakalgve.ev 48
                ++++ l++G  G+GKT ++r lak+l++e  +
  CTQ26800.1 37 IHHAYLFSGTRGVGKTSIARLLAKGLNCEtGI 68
                366799********************987544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 4375.89
//
Query:       CTQ26801.1  [L=110]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-35  119.8   9.6      5e-35  119.6   9.6    1.0  1  YbaB_DNA_bd  YbaB/EbfC DNA-binding family
  ------ inclusion threshold ------
      0.025   14.8   0.0      0.035   14.3   0.0    1.2  1  CARM1        Coactivator-associated arginine methyltransferas
      0.036   14.3   0.7      0.053   13.7   0.7    1.3  1  DUF3947      Protein of unknown function (DUF3947)
      0.043   12.9   0.3      0.061   12.4   0.3    1.2  1  IIGP         Interferon-inducible GTPase (IIGP)
        0.1   12.2   0.0       0.14   11.7   0.0    1.2  1  NDUF_B5      NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subu
       0.17   12.0   1.6         10    6.3   0.2    2.3  2  PspB         Phage shock protein B
       0.37   11.0   5.6        8.6    6.5   1.9    2.1  2  CENP-Q       CENP-Q, a CENPA-CAD centromere complex subunit
        8.1    6.6   8.7        4.5    7.4   3.2    2.2  2  bZIP_2       Basic region leucine zipper


Domain annotation for each model (and alignments):
>> YbaB_DNA_bd  YbaB/EbfC DNA-binding family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   9.6   2.2e-38     5e-35       1      90 [.      12     100 ..      12     101 .. 0.98

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 2.2e-38
                  HHHHHHHHHHHHHHHHHHTTSEEEEEETTTTEEEEEETT--EEEEEE-GGGG.GS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--X CS
  YbaB_DNA_bd   1 mkqaqkmqkkmeeaqeelaekevegssggglVkVtvngkgevksikIdpslldpedkemLedlivaAvndAlkkaeeeaeeemskltggl 90 
                  mkqaq+mq+km+++qee+a+ ev+g+sg glVkVt+ng +++++++Idpsll+ +dkemLedl++aA+ndA +++ee+++e+m+++ +g+
   CTQ26801.1  12 MKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLE-DDKEMLEDLVAAAFNDAARRIEETQKEKMASVSAGM 100
                  9**************************************************96.89******************************9998 PP

>> CARM1  Coactivator-associated arginine methyltransferase 1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.6e-05     0.035      18      68 ..       9      58 ..       4      70 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
       CARM1 18 GeiqrhseqqplrlevkttedaaeialsnteevcvfkcsvsrdteCsrvgk 68
                G++ ++++q + +++ k++e+ a++ ++ +  + ++k++++   +C rv+ 
  CTQ26801.1  9 GNLMKQAQQMQEKMQ-KMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEI 58
                778888888777775.999******************************86 PP

>> DUF3947  Protein of unknown function (DUF3947)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.7   2.4e-05     0.053      29      49 ..      10      30 ..       2      50 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.4e-05
     DUF3947 29 qavqqalqmqqqaqmqqsqiq 49
                + ++qa qmq ++q +q++i 
  CTQ26801.1 10 NLMKQAQQMQEKMQKMQEEIA 30
                569**************9986 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   2.7e-05     0.061      15      48 ..       9      42 ..       7      50 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.7e-05
                T-HHHHHHHHHHHHHHHHT--EEEEEEESTTSSH CS
        IIGP 15 gnlqkvvsiikeaikeiesaklkiavtGdsGnGk 48
                gnl+k  ++++e ++++++ + ++ vtG+sG+G 
  CTQ26801.1  9 GNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGL 42
                89******************************96 PP

>> NDUF_B5  NADH:ubiquinone oxidoreductase, NDUFB5/SGDH subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.2e-05      0.14       7      64 ..      11      67 ..       6      75 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.2e-05
     NDUF_B5  7 llraaalaarlnalksslalanlltralpkaekvavrlsgdHgkrlfvikpsrfydkr 64
                l+++a+++++ ++ k ++++a+l  ++ + a  v+v ++g H+ r + i ps   d++
  CTQ26801.1 11 LMKQAQQMQE-KMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDK 67
                6666655444.6778888899999999999999*******************999886 PP

>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2    0.0045        10      41      60 ..      13      32 ..       5      35 .. 0.54
   2 ?    5.1   0.1     0.011        24      28      57 ..      55      85 ..      50      92 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0045
        PspB 41 krLeellekAekleeRietL 60
                k+ +++ ek +k++e i  L
  CTQ26801.1 13 KQAQQMQEKMQKMQEEIAQL 32
                33445555555555555555 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.011
        PspB 28 kkkrskglsaedekrLeellekA.ekleeRi 57
                + + + +l ++d+++Le+l+  A +  ++Ri
  CTQ26801.1 55 RVEIDPSLLEDDKEMLEDLVAAAfNDAARRI 85
                566778999**********998833445555 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   1.9    0.0039       8.6     132     154 ..      11      33 ..       8      37 .. 0.85
   2 ?    6.3   0.1    0.0046        10      60      91 ..      61      93 ..      54     103 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0039
      CENP-Q 132 llpllqqLgshLesmrgnlaqle 154
                 l + +qq+++++++m++  aqle
  CTQ26801.1  11 LMKQAQQMQEKMQKMQEEIAQLE 33 
                 556689************99997 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0046
      CENP-Q 60 ralerdyeaLreLeknakaeare.rkeklkkeh 91
                 +le d+e L++L + a + a++  +e++k+++
  CTQ26801.1 61 SLLEDDKEMLEDLVAAAFNDAARrIEETQKEKM 93
                68*************998888884555555544 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.2     0.002       4.5      27      45 ..      15      33 ..      10      37 .. 0.69
   2 ?    2.2   0.3     0.086   1.9e+02      13      30 ..      79      96 ..      79     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.002
                HHHHHHHHHHHHHHHHHHH CS
      bZIP_2 27 eeeleervkeLeeeNaqLr 45
                 ++++e++++++ee+aqL+
  CTQ26801.1 15 AQQMQEKMQKMQEEIAQLE 33
                5677777777777777775 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.086
                XXXXXX-HHHHHHHHHHH CS
      bZIP_2 13 reAarrsRekkkakeeel 30
                + Aarr  e +k+k+++ 
  CTQ26801.1 79 NDAARRIEETQKEKMASV 96
                789999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2004  (0.111774); expected 358.6 (0.02)
Passed bias filter:                     1225  (0.0683251); expected 358.6 (0.02)
Passed Vit filter:                       138  (0.00769703); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 908.31
//
Query:       CTQ26802.1  [L=201]
Description: gap repair protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-24   86.7   0.0    1.7e-24   86.1   0.0    1.3  1  Toprim_4  Toprim domain
    1.1e-15   56.9   1.2    2.3e-15   55.9   1.2    1.6  1  RecR      RecR protein
    2.6e-11   43.6   0.0    4.5e-11   42.9   0.0    1.4  1  Toprim    Toprim domain
  ------ inclusion threshold ------
      0.047   13.9   0.4       0.23   11.7   0.3    1.9  2  FYVE_2    FYVE-type zinc finger
      0.049   13.5   0.4       0.31   11.0   0.0    2.5  3  HHH       Helix-hairpin-helix motif
      0.053   13.9   0.0       0.27   11.7   0.0    1.9  2  Toprim_2  Toprim-like
       0.14   12.8   0.0       0.67   10.6   0.0    2.1  2  HHH_5     Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   6.4e-28   1.7e-24       2      89 .]      82     172 ..      81     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 6.4e-28
    Toprim_4   2 eiiiVEgyaDvlaleka.giknvvavlggalspldgirpeklktenlve..aekkvkevilaldgDaeGeataerlaellleegvkvtrla 89 
                 +i++VE++aD  a+e++ ++ + ++vl+g lspldgi+p+++  ++l +  + ++++evila+++++eGeata ++ael+++ gv+++r+a
  CTQ26802.1  82 QICVVESPADIYAIEQTgQYSGRYFVLMGHLSPLDGIGPDDIGLDRLEQrlEAESITEVILATNPTVEGEATANYIAELCAQYGVDASRIA 172
                 8*******************************************99999**99999**********************999*******986 PP

>> RecR  RecR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   1.2     9e-19   2.3e-15       3      39 ..      41      77 ..      39      78 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 9e-19
                HHHHHHHHHHHHH-EE-TTT--EESSSS-CCCCSTTS CS
        RecR  3 eeLaeaLqeakekvrhCsrCgnlteedlCaICsdprR 39
                 +La+aL++a+++++hC  C+++te+++C+ICs+prR
  CTQ26802.1 41 MRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRR 77
                69*********************************** PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   1.8e-14   4.5e-11       1      90 [.      82     164 ..      82     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 1.8e-14
                 EEEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHSTTEEEEEECTTTHHHHHHHHHHH..HHHSEEEEECSSSHHHHHHHHHHHHHHTHH CS
      Toprim   1 elvivEgpsdaktiakalgsgfqavtaslGhildletefkpvyeeiedkkkvlkalkela..kradeiilatDpDreGeaiawellevlkel 90 
                 ++++vE+p+d  +i+++ g+  ++++ ++Gh+  l+         i ++   l+ l++++  +   e+ilat+p +eGea+a +++e++ ++
  CTQ26802.1  82 QICVVESPADIYAIEQT-GQYSGRYFVLMGHLSPLDG--------IGPDDIGLDRLEQRLeaESITEVILATNPTVEGEATANYIAELCAQY 164
                 59***************.99*****************........666666666665555459999********************777643 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   8.9e-05      0.23      61      99 ..      44      86 ..      26     101 .. 0.79
   2 ?   -0.1   0.0       0.4     1e+03      29      49 ..     125     145 ..     121     164 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.9e-05
      FYVE_2 61 leefkllvnskrqCldCkl....nvCkkCsvenkkekvwlCki 99
                ++ ++  +++  +C dC++    +vC+ Cs+  ++e++ +C +
  CTQ26802.1 44 AQALTRAMSEIGHCADCRTfteqEVCNICSNPRRQENGQICVV 86
                5566666777789****86222269****************86 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.4
      FYVE_2  29 lgelkeklekekskrellgnq 49 
                 l++l ++le e++ + +l+ +
  CTQ26802.1 125 LDRLEQRLEAESITEVILATN 145
                 678999999999888887764 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.31      16      25 ..      17      26 ..       8      27 .. 0.85
   2 ?   -1.6   0.1       1.2     3e+03      16      21 ..     115     120 ..     112     120 .. 0.85
   3 ?   -2.0   0.0       1.6   4.2e+03      20      27 ..     150     157 ..     150     164 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
                STT-SHHHHH CS
         HHH 16 lPGVGpktAe 25
                lPGVGpk A+
  CTQ26802.1 17 LPGVGPKSAQ 26
                9********8 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
                 STT-SH CS
         HHH  16 lPGVGp 21 
                 l G+Gp
  CTQ26802.1 115 LDGIGP 120
                 78***9 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.6
                 SHHHHHHH CS
         HHH  20 GpktAeaI 27 
                 G++tA+ I
  CTQ26802.1 150 GEATANYI 157
                 78888755 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.61   1.6e+03      57      83 ..      40      66 ..      32      71 .. 0.81
   2 ?   11.7   0.0   0.00011      0.27       1      74 [.      84     167 ..      84     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.61
    Toprim_2 57 Grkaakrlaellreagvrekirelpeg 83
                G + a+ l + ++e g++  +r++ e+
  CTQ26802.1 40 GMRLAQALTRAMSEIGHCADCRTFTEQ 66
                889999999999999988888877655 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
    Toprim_2   1 vvfEgaiDalSlaqlgikektnvvalgGtalte............aalkllerypekkvvlalDnDkaGrkaakrlaellreagvr 74 
                 +v+E++ D  ++ q g+  + ++  l+G  l++            ++ + le+++  +v+la+     G++ a+ +ael  + gv+
  CTQ26802.1  84 CVVESPADIYAIEQTGQY-SGRYFVLMGH-LSPldgigpddigldRLEQRLEAESITEVILATNPTVEGEATANYIAELCAQYGVD 167
                 79************9996.89********.7778899999*99966666688886699*******************999877754 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00026      0.67      37      52 ..      14      29 ..      10      32 .. 0.80
   2 ?   -2.0   0.0       2.2   5.6e+03       7      13 ..     115     121 ..     111     124 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00026
                HHTSTTS-HHHHHHHH CS
       HHH_5 37 LakipGiGkktAerii 52
                L  +pG+G+k A+r+ 
  CTQ26802.1 14 LRCLPGVGPKSAQRMA 29
                5558**********96 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.2
                 STT--HH CS
       HHH_5   7 vsGiGpk 13 
                 ++GiGp 
  CTQ26802.1 115 LDGIGPD 121
                 6788885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1473.99
//
Query:       CTQ26803.1  [L=624]
Description: molecular chaperone HSP90 family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.4e-131  438.0   5.7   5.6e-129  431.4   4.9    2.0  2  HSP90           Hsp90 protein
    4.1e-14   53.0   0.1    7.7e-14   52.2   0.1    1.5  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
    1.3e-13   51.0   0.2    4.3e-13   49.3   0.1    2.0  2  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
  ------ inclusion threshold ------
      0.012   15.5   1.1      0.012   15.5   1.1    2.1  2  Apolipoprotein  Apolipoprotein A1/A4/E domain
      0.046   14.2   0.0       0.21   12.0   0.0    2.2  1  HP0268          HP0268
       0.11   12.6   0.0        5.4    7.2   0.0    2.9  2  CinA_KH         Damage-inducible protein CinA KH domain
       0.19   12.0   1.4          1    9.7   1.4    2.3  1  PE              PE family
        2.1    8.9   8.0        4.1    7.9   0.2    3.6  4  PhoU            PhoU domain


Domain annotation for each model (and alignments):
>> HSP90  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00025      0.56       1      32 [.     186     217 ..     186     220 .. 0.88
   2 !  431.4   4.9  2.5e-132  5.6e-129      65     486 ..     211     623 ..     209     624 .] 0.94

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00025
                 GGGSHHHHHHHHHHCCTTSSS-EEEEEEEEXX CS
       HSP90   1 eyleekklkelvkkySeFinfpiyllkekeee 32 
                 ++l++ +++++++kyS+ i  p+++ k++e++
  CTQ26803.1 186 DFLNDWRVRSIISKYSDHIALPVEIEKREEKD 217
                 79***********************8777665 PP

  == domain 2  score: 431.4 bits;  conditional E-value: 2.5e-132
                 XXXXXXXXXXEEEEEEESXXSXGGGSXGGGSXHHHHHHHHHHTTTTTSXXSEEEEEEEXSSSXEEEEEEEXSSXXTTTTTTTTTSXXTTEEEEETTEEE CS
       HSP90  65 kkktkkvketvkewellNkqkpiWlrkpkevteeeYkeFYkslskdsedplavkhfsaegevefkaiLfvPkrapsdlfekykkkkknnikLYvrrVfi 163
                 +k+++k  etv  we++Nk +++W+r+++ev+++eYkeFYk +++d++dpl+++h ++eg+ e++++L++P++ap d++++   ++k+ +kLYv+rVfi
  CTQ26803.1 211 EKREEKDGETVISWEKINKAQALWTRSKSEVNDDEYKEFYKHIAHDYSDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRVFI 306
                 567788899***********************************************************************6...67899********** PP

                 ESXXTTSSXGGGTTXEEEEEESSSXSSSTHHHHHTCHHHHHHHHHHHHHHHHHHHTSXHHH...HHTHHHHHHHHHHHHHHHXGGGHHHHHTTXEEEET CS
       HSP90 164 tdefedllPkyLsFvkGvvdsddLPLNvsREtlqqnkilkvikkklvrKvlemlkklaeek.eeykkfykefsknlklGiiedsanrkklakLlrfkss 261
                 +d++e+++P+yL+Fv+G++ds+dLPLNvsRE+lq++ + + ++  l +++l+ml+kla+++ e+y++f+k+f+  lk G  ed +n++ +akLlrf ++
  CTQ26803.1 307 MDDAEQFMPNYLRFVRGLIDSNDLPLNVSREILQDSSVTRNLRTALTKRALQMLDKLAKDDaEKYQTFWKQFGLVLKEGPAEDPSNQEAIAKLLRFATT 405
                 *********************************************************8865267**********************************9 PP

                 ..TEEEEEEEHHHHHHHSXTTXXEEEEEEXSSHHHHHTSGGGHHHHHTTXXEEEEXSTTHHHHHHTXSEETTEEEEETTBSTXXXX.XXHHHHHHHHHH CS
       HSP90 262 ..kseeeltsLedYvermkekqksiYyiageskeevekspflerlkkkgyevlylvdpiDeyvvqqlkeyegkklvnvakeglele.eeeeekkkkeel 357
                   +s+ +++sLe+Yv+rmke+q++iYyi+++s +++++sp le l+kkg+evl+l d iDe +++ l+e++gk +++vak + +l+   +e +++++e 
  CTQ26803.1 406 htDSSAQTVSLEEYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMSYLTEFDGKAFQSVAKADESLDkLADEVDESTKEA 504
                 43455699*****************************************************************************84567778999999 PP

                 HHHHHHHHHHHHHTTTTTESEEEEXSSXSSXSEEEEBXTTSXXHHHHHHHHHHHHHHHSSTSSSSSXEEEEEXTTSHHHHHHHHHHHHTTTXHHHHHHH CS
       HSP90 358 kkkfeeltkllkevlkdkvekvkvserlvdsPcvlvtseygwsanmerimkaqalrdkskssymsskktleinprhpiikeLkkkveedkedeeakdla 456
                 +k+ e++++ +k++l+d+v++v++++rl+d+P++++t+   +s++m ++  a   + ++       k ++e+np h+++k    ++++ ++d ++ + +
  CTQ26803.1 505 EKALEPFVERVKNLLGDRVKEVRLTHRLTDTPAIVTTDADEMSTQMAKLFAAAGQAAPEV------KYIFELNPAHQLVK----RAADTQDDAQFGEWV 593
                 *************************************************99876654433......5579******9876....67777889******* PP

                 HHHHHHHHHHTTXXXSXHHHHHHHHHHHHT CS
       HSP90 457 ellyetallesGfsledpasfakrierllk 486
                 ell ++all+   +ledp++f +r+++ll 
  CTQ26803.1 594 ELLLDQALLAERGTLEDPNQFIRRMNQLLA 623
                 **************************9986 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.1   3.4e-17   7.7e-14       1     110 [.      27     182 ..      27     184 .. 0.76

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 3.4e-17
                 EHHHHHHHHHHHHHHHHHHH......HS..TTT..EEEEEEEEEETEEEEEEEESSSSSTTHHHT.......GTCS.TTCH.......HCSTCHTSTSS CS
   HATPase_c   1 gdekrLrqiisnlvdNavkf......at..kag..eieveikaseddlvisveDnGiGipkedlk.......klfe.kfsq.......ddstkrggggt 74 
                 ++e++Lr++isn++d+a+k       ++  ++g  e++v+++ ++d+ ++++ DnGiG+++e++        k+++ +f +       +ds+ +g++g+
  CTQ26803.1  27 NKEIFLRELISNASDAADKLrfralsQPdlYEGdgELRVRVSFDKDNRTLTIADNGIGMNREEVIdhlgtiaKSGTkAFLEsmgsdqaKDSQLIGQFGV 125
                 5899****************99999822455551155666665789*****************999999999777777777888877777777778888 PP

                 SH.HHHHH................HH.HHHHTT.TEEEE..EEETTTEEEEEEEEES CS
   HATPase_c  75 Gl.Glsiv................kk.lvelmg.Geiwv..esepgrGttftftlpl 110
                 G+ ++ iv                +  ++e  g Ge +v  +++ +rGt++t++l++
  CTQ26803.1 126 GFySAFIVadkvtvrtraagdkpeNGvFWESAGeGEYTVadITKADRGTEITLHLRE 182
                 8665555567666666666666665556665666777777777779********986 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.1   1.9e-16   4.3e-13       1     123 [.      25     171 ..      25     181 .. 0.83
   2 ?   -3.1   0.0       2.9   6.6e+03      48      66 ..     394     412 ..     392     424 .. 0.68

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 1.9e-16
  HATPase_c_3   1 ysl.ekAlaelvdNsldAdaen..................vkievnknrgktgeivieDdGkGmseeelknal.rlatsskeak..r.......ksts 69 
                  ys+ e+ l el+ N+ dA  +                   v ++++k++    +++i D+G Gm++ee+++ l ++a+s ++a   +       +s+ 
   CTQ26803.1  25 YSNkEIFLRELISNASDAADKLrfralsqpdlyegdgelrVRVSFDKDN---RTLTIADNGIGMNREEVIDHLgTIAKSGTKAFleSmgsdqakDSQL 119
                  566688899********877667***************88888888865...7******************774799999886544144444446888 PP

  HATPase_c_3  70 lGkkGiGlklAslslgkkltvitkkegesstltldvdkidkenekvleeltvee 123
                  +G++G+G + +++ +++k+tv t++ g++ ++ + ++  + e+e++++++t ++
   CTQ26803.1 120 IGQFGVG-FYSAFIVADKVTVRTRAAGDKPENGVFWES-AGEGEYTVADITKAD 171
                  *******.********************9999999984.456888888887664 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.9
  HATPase_c_3  48 eelknalrlatsskeakrk 66 
                  e + + lr+at++++++ +
   CTQ26803.1 394 EAIAKLLRFATTHTDSSAQ 412
                  5667788888888885433 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.46     1e+03      78     127 ..     344     424 ..     340     431 .. 0.56
   2 ?   15.5   1.1   5.3e-06     0.012      28     103 ..     483     556 ..     469     589 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.46
                     HHHHHHHHHHHCHHCCHHCHCCHCHH..............................HHHHHHHH.HHHHHHHHCHHHHHHH CS
  Apolipoprotein  78 yteelrerlaadaeelqeqlavyaee..............................lrerlerh.vealkarlapyveelr 127
                      t++lr  l+++a ++ ++la+  +e                              lr  + +   +a+   l++yv +++
      CTQ26803.1 344 VTRNLRTALTKRALQMLDKLAKDDAEkyqtfwkqfglvlkegpaedpsnqeaiaklLRFATTHTdSSAQTVSLEEYVSRMK 424
                     567777777777777777777666666666666666666666655555555555543333333334455555555555555 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 5.3e-06
                     HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHH CS
  Apolipoprotein  28 rdrlskeleelrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaee 103
                     +++  + l++l +++++ ++e+ ++lep ++ v++ lg++++e+r  l+  + +  + ++ da+e+  q+a+  + 
      CTQ26803.1 483 VAKADESLDKLADEVDESTKEAEKALEPFVERVKNLLGDRVKEVR--LTHRLTDTPAIVTTDADEMSTQMAKLFAA 556
                     567778899999999999999999999999999999999999997..45777777777888888888888876655 PP

>> HP0268  HP0268
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.6e-05      0.21       3      39 ..     400     436 ..     398     463 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.6e-05
                 EEE-TTTT-SS-TTHHHHHHHHHHHH-SEEEEEE--T CS
      HP0268   3 LkLareelnakpkkislekleekvekegekifYfdke 39 
                 L++a ++++++++++sle+  +++++ +eki+Y+  +
  CTQ26803.1 400 LRFATTHTDSSAQTVSLEEYVSRMKEGQEKIYYITAD 436
                 899***********************99*****9766 PP

>> CinA_KH  Damage-inducible protein CinA KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.12   2.8e+02      31      50 ..      56      75 ..      53      79 .. 0.88
   2 ?    7.2   0.0    0.0024       5.4      47      71 ..     499     523 ..     495     523 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.12
                EEEETTEEEEEEE...EEHH CS
     CinA_KH 31 iyakegevtvRltakaanee 50
                +y  +ge +vR++ + +n++
  CTQ26803.1 56 LYEGDGELRVRVSFDKDNRT 75
                58899********9999986 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0024
                 EEHHHHHHHHH....HHHHHTTTTE CS
     CinA_KH  47 aneeeaealiapveeeirerlgdyv 71 
                 ++ +eae+ ++p++e++++ lgd v
  CTQ26803.1 499 ESTKEAEKALEPFVERVKNLLGDRV 523
                 6789******************976 PP

>> PE  PE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.4   0.00045         1      36      64 ..     535     563 ..     479     587 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00045
                 HH----SSSSHHHHHHHHHHHHHHHHHHH CS
          PE  36 ttavlaaaaDeVSaaiAalfsahaqeyqa 64 
                 t a++   aDe S+++A+lf+a +q+  +
  CTQ26803.1 535 TPAIVTTDADEMSTQMAKLFAAAGQAAPE 563
                 556667779****************9765 PP

>> PhoU  PhoU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.3     0.047   1.1e+02       7      44 ..      12      50 ..       7     100 .. 0.81
   2 ?   -4.2   0.0         8   1.8e+04      37      48 ..     242     253 ..     229     261 .. 0.62
   3 ?   -0.6   0.1      0.86   1.9e+03      28      57 ..     336     366 ..     323     374 .. 0.75
   4 ?    7.9   0.2    0.0018       4.1      15      51 ..     468     504 ..     459     523 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.047
                HHHHHHHHHHHHHHCT-HHHH.HHHHHH.HHHHHHHHHHH CS
        PhoU  7 iveemlddalealeekdtela.revier.ddeidrlekei 44
                 v++ l++++ +l+++  e+  re+i++  d +d+l+++ 
  CTQ26803.1 12 EVKQLLHLMIHSLYSNK-EIFlRELISNaSDAADKLRFRA 50
                58899********9998.5555998865599999998876 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 8
                 HHHHHHHHHHHH CS
        PhoU  37 idrlekeiersl 48 
                  d+ +ke+++++
  CTQ26803.1 242 NDDEYKEFYKHI 253
                 344455554444 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.86
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH.HGG CS
        PhoU  28 revierddeidrlekeiersllealak.rqp 57 
                 re++++     +l+ ++++++l++l k  + 
  CTQ26803.1 336 REILQDSSVTRNLRTALTKRALQMLDKlAKD 366
                 8889999999999999999988888553444 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0018
                 HHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PhoU  15 alealeekdtelarevierddeidrlekeiersllea 51 
                 +++ l e d ++ + v + d+++d+l +e+++s  ea
  CTQ26803.1 468 MMSYLTEFDGKAFQSVAKADESLDKLADEVDESTKEA 504
                 5667888898888*****************9994443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1047  (0.058397); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 4261.30
//
Query:       CTQ26804.1  [L=214]
Description: adenylate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-61  204.4   0.1    1.1e-60  204.1   0.1    1.0  1  ADK        Adenylate kinase
    7.8e-28   97.6   0.2    2.1e-27   96.2   0.1    1.7  2  AAA_17     AAA domain
    1.5e-16   60.1   0.0    2.5e-16   59.3   0.0    1.4  1  ADK_lid    Adenylate kinase, active site lid
    9.2e-06   26.1   0.5      0.072   13.4   0.0    2.5  2  Hydin_ADK  Hydin Adenylate kinase-like domain
    0.00098   19.3   0.0     0.0067   16.6   0.0    2.1  1  AAA_33     AAA domain
     0.0038   17.8   0.0     0.0076   16.8   0.0    1.6  1  AAA_18     AAA domain
  ------ inclusion threshold ------
      0.029   14.6   0.0      0.049   13.9   0.0    1.3  1  AAA_28     AAA domain


Domain annotation for each model (and alignments):
>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.1   0.1   4.3e-64   1.1e-60       1     150 [.       5     186 ..       5     187 .. 0.99

  Alignments for each domain:
  == domain 1  score: 204.1 bits;  conditional E-value: 4.3e-64
                 EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHCT-HHHHHHHHHHHTTSS--HHHHHHHHHHHHHCHGTTTEEEEESB-SSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK   1 llGaPgaGKGtqaeklvkkyglahlstGdllRaevksgtelGkeakevmdkgelvpdevvvklvkeelekedkkkgfllDGfPRtveqaealeelleee 99 
                 llGaPgaGKGtqa+ +++kyg++++stGd+lRa+vksg+elGk+ak++md+g+lv+de+v++lvke++++ed+++gfllDGfPRt++qa+a++e    +
  CTQ26804.1   5 LLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE----A 99 
                 79******************************************************************************************99....9 PP

                 TSEESEEEEEE--HHHHHHHHHT....................................GSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK 100 kvkldlvleldvpeevlveRltg....................................DneetvkkRletykkqtkplidyykkkg 150
                 ++++d+vle+dvp+e++v+R++g                                    D+eetv+kRl +y+++t+pli yy+k++
  CTQ26804.1 100 GITVDYVLEFDVPDELIVDRIVGrrvhaasgrvyhikfnppkvegkddvtgeelttrkdDQEETVRKRLVEYHQMTAPLIGYYTKEA 186
                 ***********************************************************************************9975 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.1   8.1e-31   2.1e-27       1     127 [.       6     131 ..       6     134 .. 0.88
   2 ?   -1.3   0.0         1   2.7e+03     129     135 ..     158     164 ..     145     210 .. 0.68

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 8.1e-31
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTT.TS.HSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrg.gl.akardemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldglpkevl 97 
                 lG PG+GKgtq++ ++ekyg++ +s+Gd+lr+ +k+g +l ++a+d m+ ++l+ ++ + ++++e+ia+e++++g+l+dg+pr+  qa++   +++   
  CTQ26804.1   6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGsELgKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADA---MKE--- 98 
                 7*********************************99956767788888899*********************************999885...443... PP

                 HHH..SEEEEEE--HHHHHHHHHHHT...TST- CS
      AAA_17  98 eelkpdaiilleadpeeilerrlkdr...trgr 127
                 + + +d ++ +++++e i++r   +r    +gr
  CTQ26804.1  99 AGITVDYVLEFDVPDELIVDRIVGRRvhaASGR 131
                 68899****************999952224665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1
                 S-SHHHH CS
      AAA_17 129 ddneesi 135
                 dd+ee++
  CTQ26804.1 158 DDQEETV 164
                 3333332 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   9.8e-20   2.5e-16       1      36 []     123     158 ..     123     158 .. 0.99

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 9.8e-20
                 EEE-TTT--EEETTTB--SSTTB-TTT--.-B--GG CS
     ADK_lid   1 RrvCpkCGrsYhvvfnpPkveglCDkCGepLvqRsD 36 
                 Rrv+ ++Gr+Yh++fnpPkveg++D++Ge+L++R+D
  CTQ26804.1 123 RRVHAASGRVYHIKFNPPKVEGKDDVTGEELTTRKD 158
                 9***********99*********************9 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.8e-05     0.072       2      51 ..       3      51 ..       2      57 .. 0.89
   2 !   10.6   0.1    0.0002      0.52     172     197 ..      60      85 ..      56      86 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.8e-05
   Hydin_ADK  2 iivhGaPlsGKtatavtLakkYeaAlltiDsvvleAisdgnssaGlrAre 51
                ii+ GaP +GK + a  +  kY++  ++  +++  A+ +g s+ G +A++
  CTQ26804.1  3 IILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSG-SELGKQAKD 51
                8999****************************99999776.567777776 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0002
   Hydin_ADK 172 PedllveIlsERlqlndCyrGvvfDg 197
                  ++l+++++ ER+  +dC  G ++Dg
  CTQ26804.1  60 TDELVIALVKERIAQEDCRNGFLLDG 85 
                 589**********************9 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.6e-06    0.0067       2     120 ..       3     125 ..       3     136 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.6e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfg...tdqqsktdytrvldr.lyqilnelarkalsag...rnvildatnlsrrerarflklar 93 
                 ++l G+pG+GK t a+ +++k g   +s+ +++r+ ++   +  ++ +d  ++ +  + + + +l++++ +++   ++++ld   ++  + +++ ++  
  CTQ26804.1   3 IILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKsgsELGKQAKDIMDAGKLvTDELVIALVKERIAQEdcrNGFLLDGFPRTIPQADAMKEAGI 101
                 6899*******************8888888877766663664444555555555443333444444444444333244666543333333333333332 PP

      AAA_33  94 rlgvpvrivvvetdeetlkeRlakRaa 120
                      + ++ +++++e++ +R+  R  
  CTQ26804.1 102 ---TVDYVLEFDVPDELIVDRIVGRRV 125
                 ...345778899999999999888865 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     3e-06    0.0076       1     113 [.       3     123 ..       3     133 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.....gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknl.vidghlaeleseaakd 93 
                 I+l G+pG+GK t a+ + ++ g+     g+ lr  +k +  l  + ++ + +  +l++d    l+ al + + a+e++ n  ++dg++    +++a +
  CTQ26804.1   3 IILLGAPGAGKGTQAQFIMEKYGIpqistGDMLRAAVKSGSELGKQAKD-IMDAGKLVTDE---LVIALVKERIAQEDCRNGfLLDGFPRTIPQADAMK 97 
                 9*******************98889888766555555544333333333.33333333333...22222222222334433336666655544443333 PP

      AAA_18  94 ikk......vvLtaspeelleRlekR 113
                   +         ++++e   +R+  R
  CTQ26804.1  98 EAGitvdyvLEFDVPDELIVDRIVGR 123
                 33345553333345555555555555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.9e-05     0.049       1      79 [.       2      84 ..       2      90 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.9e-05
      AAA_28  1 kivitGgestGKTtlleaLaar.gypvv..pEaareileeklakgedalpwv.edllafaervleeqleeeaaaaankvlfcD 79
                +i+++G++++GK t ++ + ++ g+p +   ++ r  ++++++ g++a +   + +l   e+v++  +e+ a+ + ++ +++D
  CTQ26804.1  2 RIILLGAPGAGKGTQAQFIMEKyGIPQIstGDMLRAAVKSGSELGKQAKDIMdAGKLVTDELVIALVKERIAQEDCRNGFLLD 84
                79****************99877**988789**********998888666555566666677777777777777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1587.20
//
Query:       CTQ26805.1  [L=320]
Description: ferrochelatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-108  363.0   0.0   1.4e-108  362.8   0.0    1.0  1  Ferrochelatase  Ferrochelatase
    4.7e-05   23.7   0.0      0.006   16.9   0.0    2.4  2  CbiX            CbiX
  ------ inclusion threshold ------
       0.11   11.5   0.0       0.17   10.8   0.0    1.2  1  RICTOR_N        Rapamycin-insensitive companion of mTOR, N-te


Domain annotation for each model (and alignments):
>> Ferrochelatase  Ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.8   0.0  2.3e-112  1.4e-108       1     313 [.       5     316 ..       5     318 .. 0.98

  Alignments for each domain:
  == domain 1  score: 362.8 bits;  conditional E-value: 2.3e-112
                     .EEEEEEE----SSC..CCHHHHHHHHCT-TTTS-S-.TTTHHHHHHHHHHHHHHHHHHHHHHT..TSS-SHHHHHHHHHHHHHHHHHHH---EE CS
  Ferrochelatase   1 ktavLLlnlGgPekp..edvrpflenllsdrrvielp.lllqkllaklilkerlekvaekYeki..gggSPlneitrkqaealekelaergidvk 90 
                     kt++LL+nlG+P++p   +v+++l+++lsd+rv++ + ll+ +ll+++il+ r+++va+ Y+++  ++gSPl++++r+q++al+++l +     +
      CTQ26805.1   5 KTGILLANLGTPDAPtpGAVKRYLRQFLSDKRVVDTSrLLWCPLLRGVILPIRSPRVAKLYQSVwmEEGSPLMVYSRRQQQALAARLPD----TP 95 
                     79*************99************************************************9*********************95....8* PP

                     EEEEESSSSSBHHHHHHHHHCTT-SEEEEEES-SS--TTTHHHHHHHHHHHHHHTT-SSEEEEE---TT-HHHHHHHHHHHHHHHTTS-HC.C-E CS
  Ferrochelatase  91 vylamrywePsiedaleelkadgvervvvlplyPqysasttgssleeleralkkkreapevrvirqfydhpgyiealaesikealeelpeekkak 185
                     v+l+m+y++Ps+++a+++l a+gve++vvlplyPqys+st++++ +el+r l+kkr  p +++ir++++hp+yi+ala s++++++ +  ++++ 
      CTQ26805.1  96 VALGMSYGSPSLASAVDDLLAQGVEHIVVLPLYPQYSCSTVAAVWDELARILAKKRAIPGISFIRDYAEHPDYIHALAASVRASFAVH--GEPDL 188
                     **************************************************************************************99..7789* PP

                     EEEEEE--BHHHHT.TT-SHHHHHHHHHHHHHHHTTT-S.-EEEEEE---SSS-BSSSBHHHHHHHHCCC.-S-EEEE-TT-SS--HHHHIIIII CS
  Ferrochelatase 186 llfsaHglPeravkkkgdpYqqqveetarlvaealglke.evelayqSrvGpeeWlePdtddtleelaekgvkaivvvpigFvsDhlEtleeldi 279
                     ll+s+Hg+P+r++ ++gd Y+q++++t+r +++algl++ +v++++qSr+G+e+Wl+P+td+tl+ l ekg+k+i v ++gF++D+lEtlee+++
      CTQ26805.1 189 LLLSYHGIPQRYA-NQGDDYPQRCRDTTRELVSALGLPPeRVMMTFQSRFGREPWLTPYTDETLKMLGEKGTKHIQVLCPGFAADCLETLEEIAV 282
                     ************9.56******************************************************************************* PP

                     IIITTSTT..CCCEEE----TT-HHHHHHHHHHH CS
  Ferrochelatase 280 earelaeeaggekfvrvptlndspafiealadlv 313
                     ++re++ eagg++++++p+ln+++a+ie++++l 
      CTQ26805.1 283 QNREIFLEAGGKQYEYIPALNADAAHIEMMVNLT 316
                     *******************************986 PP

>> CbiX  CbiX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     1e-06     0.006      18      60 ..      86     127 ..      77     146 .. 0.90
   2 !    4.3   0.0    0.0082        49      37      73 ..     244     281 ..     240     314 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1e-06
                 HHHHHCCSCCCEECESCCCECCSCCSSHHHHC-SBSEEEEEEE CS
        CbiX  18 elrekgpfkpvelgfleleepsleealrelaeqgvkrivvvPl 60 
                 +l ++ p  pv lg   + +psl  a++ l +qgv++ivv+Pl
  CTQ26805.1  86 ALAARLPDTPVALGM-SYGSPSLASAVDDLLAQGVEHIVVLPL 127
                 566777888999997.899***********************7 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0082
                 ECCSCCSSHHHHC-SBSEE.EEEEESSSSSHHHHTHHH CS
        CbiX  37 epsleealrelaeqgvkri.vvvPlflfaGvhvkeDIp 73 
                 +p+ +e+l+ l e+g k+i v+ P f ++   + e I 
  CTQ26805.1 244 TPYTDETLKMLGEKGTKHIqVLCPGFAADCLETLEEIA 281
                 6999***************7778999888766666665 PP

>> RICTOR_N  Rapamycin-insensitive companion of mTOR, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.9e-05      0.17     126     150 ..     271     295 ..     268     312 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.9e-05
    RICTOR_N 126 ricletLaElllldpelvveagGlr 150
                 + cletL E+++ ++e+++eagG +
  CTQ26805.1 271 ADCLETLEEIAVQNREIFLEAGGKQ 295
                 56********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2365.21
//
Query:       CTQ26806.1  [L=434]
Description: inosine/guanosine kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-13   48.2   0.0    6.6e-08   32.2   0.0    2.5  2  PfkB      pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   3.7e-12   6.6e-08      80     237 ..     140     296 ..      49     308 .. 0.75
   2 !   13.6   0.0   1.7e-06     0.031     248     296 ..     347     415 ..     339     421 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 3.7e-12
                 TTEEEESSSEEEEEEEEETTTSEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEES.....EECTTSHHHHHHHHHHHHHHTTE......EEEEEC. CS
        PfkB  80 dyvkidedtrtglalivvdedgertivfnrgaaadltkeeleededlleeadllyisg.....llsselpeavleelaeaaknggt......fdpnll. 166
                 +y++ + d   g +++++   gert+ + +g++++l++e    +e+ ++ a+ l++ +        +++p+a+++++++a+k+          ++++  
  CTQ26806.1 140 NYLQGV-DGAIGRCFTLIGDSGERTFAISPGHMNKLRPESI--PEAVIAGASALVLTSylvrcKPGEPMPDATMKAIEYAKKHDVPvvltlgTKYVIAd 235
                 555533.34789999999977*****************865..99999999999999986654445678888888888888888766555543333321 PP

                 ESSSHHHHHHHHHHH.CTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE.T CS
        PfkB 167 dplgaqfkeallell.aladllkpneeElealtgekledieealaalhklkakgaktvvvtlGkeGalvve.k 237
                 +p++       +e+l +++++l +neeE ealtg + +    a +al +     +++v+ t G  G + +  +
  CTQ26806.1 236 NPAW------WQEFLqEHVSILAMNEEEGEALTGFA-DPLSAANKALDW-----VDLVLCTAGPAGLYMAGfT 296
                 3444......4555558*******************.466666666666.....99**********9988653 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.7e-06
                 SSS-SBGTTHHHHHHHHHHHHHHT....................THHHHHHHHHHHHHHHHHHTSSSSS CS
        PfkB 248 kvkvvDttGAGDsfvggflaalle....................gksleealrfanavAalvvqkkgai 296
                 ++k+ +t+GAGD   +++l  +++                      sl++ +++an+v+ +v+ +++++
  CTQ26806.1 347 PEKIMNTNGAGDGALAALLHDITAnnyhrnnvpnsskhkckwltYSSLAQVCKYANRVSYQVLNQHSPR 415
                 589*********************999999999999999999999999999999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3141.54
//
Query:       CTQ26807.1  [L=558]
Description: putative monovalent cation:proton antiporter (CPA2 family) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-77  260.0  52.9    4.2e-77  259.5  52.9    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
    4.2e-24   85.0   0.1    6.9e-24   84.3   0.1    1.4  1  TrkA_N          TrkA-N domain
     0.0043   16.7   0.1      0.008   15.8   0.1    1.5  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0057   16.8   0.0      0.011   15.9   0.0    1.4  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
  ------ inclusion threshold ------
      0.046   14.2   1.0       0.12   12.8   0.1    2.1  2  B12-binding_2   B12 binding domain
       0.14   12.2   0.2       0.31   11.1   0.1    1.6  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.5  52.9   1.4e-80   4.2e-77       3     380 ..      13     384 ..      11     387 .. 0.95

  Alignments for each domain:
  == domain 1  score: 259.5 bits;  conditional E-value: 1.4e-80
                     HHHHHHHHHHHHHHHTTSXHHHHHHHHHHHHTTTTTS.....HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   3 llillallvgllarrlklpeivgliiaGlllGpsglgliepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliGll 97 
                      +++la+++g++a++l+++++vg+++aG+l Gp+++g+++++     +l+elg+ill+F +Gl+++l++l++++  ++ +a+++++++++l G++
      CTQ26807.1  13 GGLVLAFILGMIANKLRISPLVGYLLAGVLAGPFTPGFVADT-KLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATLL-GMA 105
                     56777999999******************************9.************************************************.*** PP

                     HH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTX..XXXXTSSSTS......XHHHHHH CS
  Na_H_Exchanger  98 lylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalak..eeaggetsll......llllifl 184
                     l++   lg++l  +++fg++ls+ ++vv+l+ l+e+++++++ g++++g+++++D+v+v+ l++l+a+a+  e+ + ++++l      +++++++
      CTQ26807.1 106 LSA--ALGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAIAGmaEKGNVGFASLaldlgiTIGKVVA 198
                     **8..7999************************************************************9884444444444699999******* PP

                     HHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHH.HHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger 185 vvavgglllglvigwllrlitrftdddrelevllvlllalla.allaellgvsgilgaflaGlvlseyefsnklseklesfreglfnplfFvlvG 278
                     ++a++ l+++++++w++++  ++  ++rel++l vl+lal++ +++ el++vs +lgaf+aG+vl+e+e+s+++++++ ++r ++f++lfFv+vG
      CTQ26807.1 199 FIAIMMLVGRRLVPWIMSRSAAT--GSRELFTLSVLALALGIaFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLR-DAFAVLFFVSVG 290
                     ***********************..****************955666777********************************.9*********** PP

                     HHSXHHHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTTSSTTTCSTSXHHHHHHH CS
  Na_H_Exchanger 279 lsldlkvlnnhlsvlilvllilvaillgrilavflllrllglslrealiigfgglqrgavalalaalgpalgllarelyallivvvlftvlvqGl 373
                     + +d+ vl   ++ +++vl++l++i++g+ +a+f+l+r +g+s r+al+i+++++q+g++a++la lg al+ll+++  +l+++ +++++     
      CTQ26807.1 291 MLFDPMVL---VQQPLAVLATLAIIIFGKSAAAFFLVRMFGHSPRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAIISIM---- 378
                     ********...9*******************************************************************************.... PP

                     HHHHHHH CS
  Na_H_Exchanger 374 slkpllk 380
                      l+p+l+
      CTQ26807.1 379 -LNPVLF 384
                     .777765 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.1   2.3e-27   6.9e-24       2     115 ..     421     534 ..     420     535 .. 0.98

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 2.3e-27
                 EEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESSGG CS
      TrkA_N   2 iiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqdpe 100
                 +++G+GrvG+ l e+L+++g++ vv+++++ rv+elre+g+ +v g+a++ee++e a+++ a++++ ++++  +   +v++a+e +p+++iiara++++
  CTQ26807.1 421 LLVGFGRVGSLLGEKLMAQGIPLVVVETSRTRVDELRERGISAVLGNAANEEIMELAHLDCARWLLLTIPNGYEAGEIVASAREKCPNIEIIARAHYDD 519
                 689***************9988***************************************************************************** PP

                 GHHHHHHHTTSEEEE CS
      TrkA_N 101 haellkklgadvvis 115
                 +++++ + ga++v++
  CTQ26807.1 520 EVDYIIDRGANQVVM 534
                 *************96 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.7e-06     0.008       3      48 ..     422     469 ..     420     500 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.7e-06
                 EES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETT.C CS
        ApbA   3 ilGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseg.g 48 
                  +G+G +Gsll+ kL ++g + +++  sr r+++l+++G++    +  
  CTQ26807.1 422 LVGFGRVGSLLGEKLMAQGIPLVVVETSRtRVDELRERGISAVLGNaA 469
                 79*******************999999999**********98877752 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.6e-06     0.011       4      80 ..     422     506 ..     420     551 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.6e-06
                    EE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT......EEE-SSHHHHHHHC.....SEEEE-SSSHHHHHHHHHSHCCC- CS
  NAD_binding_2   4 fiGlGvMGsnmalnllkagykvavynrtkekveelvaeg......akaaesieelvasl.....dvvitmvkagkavdevieglleal 80 
                    ++G G  Gs + ++l+++g+ ++v++ ++ +v+el ++g          +  ee+++ +     +  ++ +++g +  e++ +  e++
     CTQ26807.1 422 LVGFGRVGSLLGEKLMAQGIPLVVVETSRTRVDELRERGisavlgN---AANEEIMELAhldcaRWLLLTIPNGYEAGEIVASAREKC 506
                    69************************************97753322...333333333366678999999999999888888744444 PP

>> B12-binding_2  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.6   4.7e+03      30      49 ..     158     177 ..     148     186 .. 0.78
   2 ?   12.8   0.1     4e-05      0.12      18      52 ..     399     434 ..     386     439 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.6
  B12-binding_2  30 aavdvlndvllpamkeVGdl 49 
                    ++v vl  vllpa+  + ++
     CTQ26807.1 158 DLVMVLTLVLLPAIAGMAEK 177
                    57889999999999877766 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4e-05
  B12-binding_2  18 eelideal.aqgsaavdvlndvllpamkeVGdlfga 52 
                    e+ ++e+l ++++ +vd++n++ll +  +VG l g+
     CTQ26807.1 399 EQTLEEVLeDEKQVPVDICNHALLVGFGRVGSLLGE 434
                    45666666223355*****************99886 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00011      0.31      13      55 ..     418     459 ..     408     479 .. 0.86
   2 ?   -3.7   0.0       3.8   1.1e+04      30      49 ..     523     542 ..     521     544 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                   -EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHH CS
  Shikimate_DH  13 kkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaee 55 
                   +++ll+G G++++l+ ++L+a+g+  +vv+  +++r++el+e+
    CTQ26807.1 418 NHALLVGFGRVGSLLGEKLMAQGIP-LVVVETSRTRVDELRER 459
                   689*********************9.999999*******9987 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.8
                   HHHCCT-CEEEEEESSHHHH CS
  Shikimate_DH  30 hLlakgvkkvvvaNRtlera 49 
                   +++++g+++vv   R+++ra
    CTQ26807.1 523 YIIDRGANQVVMGEREIARA 542
                   67788999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 4261.84
//
Query:       CTQ26808.1  [L=406]
Description: fosmidomycin efflux system, member of the major facilitator superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-44  150.7  74.9    6.2e-32  110.9  41.1    2.0  2  MFS_1     Major Facilitator Superfamily
      0.002   16.5  17.6      0.056   11.7   3.0    2.5  2  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9  41.1   6.9e-36   6.2e-32       2     341 ..      31     355 ..      30     355 .. 0.85
   2 !   53.6  25.8   1.8e-18   1.6e-14       2     176 ..     233     403 ..     231     406 .] 0.89

  Alignments for each domain:
  == domain 1  score: 110.9 bits;  conditional E-value: 6.9e-36
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlg 98 
                 +l+++l+ +  s++++++p +l+ ++ ++  +ig+++ ++ l+++++++++G+++d+ +  + l +g+ +++ g l+ll + ++++ ++l++ +l G g
  CTQ26808.1  31 SLSHLLNDMIQSLILAIYP-LLQAEFSLTFVQIGMITLTFQLTSSLFQPVIGYITDKRSMPWSLPVGMCFTLCG-LILLaL-AGSFgMVLLAAALVGTG 126
                 688999*************.9*************************************9999************.555526.78888************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.Wravfyilaivsllafv..lfllllpeepperkrkspkeeekgtgpa 194
                 ++++ p +  +++  + + ++g+a +l+++g ++G+ lgpll++++++ +g   +++++la++++++++  +  ++  + + ++++++p+       p 
  CTQ26808.1 127 SSVFHPESSRVARMASGG-RHGLAQSLFQVGGNFGSSLGPLLAAVIIAPYGkGNVAWFVLAALLAIVVLsqISRWYAAQHRMNKGKPKPAIV----NPL 220
                 888888888877777777.****************************777757777777777777776666655666555555555555444....222 PP

       MFS_1 195 plvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgail.allagrlsdrlgrrrrlllallllllaalgla 292
                 p     k +l+     ill+ +++  f +++++++ ++yl+  +gl+  ++++ l  +++l+++++  +++g + d++gr+  ++ ++l+++ ++l l 
  CTQ26808.1 221 PR---KKVILAVG---ILLMLIFSKYFYMASISSYYTFYLMHKFGLT--VQNAQLHLFAFLFAVAAgTVIGGPVGDKIGRKYVIWGSILGVAPFTLVLP 311
                 22...33444444...578888888888888****************..88888777777777777799999999*****9999999999999999999 PP

       MFS_1 293 llavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglf 341
                 ++++     ++ ++ v+iGf l+ +f+++l++a++l+p  + g++sglf
  CTQ26808.1 312 YASLE----WTGILTVIIGFILASAFSAILVYAQELLP-GRIGMVSGLF 355
                 99999....888899**********************8.********97 PP

  == domain 2  score: 53.6 bits;  conditional E-value: 1.8e-18
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlga 99 
                 l+++f  ++ ++ +++ ++ +l++ +g++++ ++l l ++ ++ a++++++G+++d++Gr+ v++ ++l+ a + +l l + +sl +  +l v+ G+  
  CTQ26808.1 233 LMLIFSKYFYMASISSYYTFYLMHKFGLTVQNAQLHLFAFLFAVAAGTVIGGPVGDKIGRKYVIWGSILGVAPF-TLVLpY-ASLEWTGILTVIIGFIL 329
                 56777778888888888888******************************************************.444436.7777999********** PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                 +++f+a+++++ ++ p+ + g++ gl+ +++     lg+++ glla++ +  +v+ i+a++ ll+f+   ++lp+++
  CTQ26808.1 330 ASAFSAILVYAQELLPG-RIGMVSGLFFGFAFGMGGLGAAVLGLLADHTSIDLVYKICAFLPLLGFLT--IFLPDNR 403
                 *****************.88888888877777777******************************885..7777765 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   3.0   6.2e-06     0.056       4      86 ..      28     110 ..      25     136 .. 0.93
   2 !   11.6   5.1   7.1e-06     0.063     290     358 ..     226     290 ..     203     316 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.2e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP   4 vllsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslllalP 86 
                  ++sl  l++ m+ +++  +   ++ +F+l+  ++g+i+ ++++++ l+  +++Y+ +++  P  + +g++++ +g +llal 
  CTQ26808.1  28 GAISLSHLLNDMIQSLILAIYPLLQAEFSLTFVQIGMITLTFQLTSSLFQPVIGYITDKRSMPWSLPVGMCFTLCGLILLALA 110
                 56788888888999999999999********************************************************9985 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 7.1e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 290 llknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkkl 358
                 +l   i+l++i+s+ f++  ++ ++tF   yl ++F+l+ ++A+l + +++++++a+G+++gG +  k+
  CTQ26808.1 226 ILAVGILLMLIFSKYFYMASISSYYTF---YLMHKFGLTVQNAQLHL-FAFLFAVAAGTVIGGPVGDKI 290
                 566678999*****************9...9*************996.8899***********887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2670.15
//
Query:       CTQ26809.1  [L=550]
Description: bifunctional UDP-sugar hydrolase and 5'-nucleotidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-33  114.7   0.2    9.7e-33  113.6   0.2    1.6  1  5_nucleotid_C  5'-nucleotidase, C-terminal domain
    2.9e-17   63.9   0.2    4.6e-17   63.2   0.2    1.3  1  Metallophos    Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> 5_nucleotid_C  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.2   1.1e-36   9.7e-33       1     154 [.     363     507 ..     363     511 .. 0.95

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 1.1e-36
                    EEEEESSB....---HHTS--HHHHHHHHHHTGSTT--EEEEEGGG----BTTTEEEHHHHHHHS-S--EEEEEEEEHHHHHHHHHH.HTTTTTS- CS
  5_nucleotid_C   1 vigtttveldgrdlalrtgetnlgnliadalraaagadialangggiradlpaGditvkdlltvlpfgntlvvveltGaqlkeaLenesvsaskaa 96 
                    +ig+++  l+g + ++r+ +tn+g l+  a++a ++ad+a+++gggir++++aGdit+kd+++v+pfgn l+ v+++G+++ ++L   +v + k +
     CTQ26809.1 363 KIGSVNGHLEGDRSKVRFVQTNMGHLLLAAQMARSNADFAVMSGGGIRDSIEAGDITYKDVMKVQPFGNVLTYVDMSGKEVVDYLT--AVAQMKPD 456
                    58899999999889999*********************************************************************..799***** PP

                    -TT-EEEESEEEEE-TTS-TT--EEEESSS-BEEE--TTSEEEEEEEHHHHTTGGG-H CS
  5_nucleotid_C  97 sgrflqvsGlrytydlskpagervtslsvtvngkpldddktYkvatnsylasggdgfs 154
                    sg+++q+++++++      ++ ++ +l  +++g+p+d++ktY+ at s+ a+ggdg++
     CTQ26809.1 457 SGAYPQFANVSFVA-----KDGKLNDL--KIKGEPVDPAKTYRMATLSFNATGGDGYP 507
                    ********999954.....599*****..77*************************97 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.2   5.2e-21   4.6e-17       2     202 ..      35     254 ..      34     256 .. 0.78

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 5.2e-21
                  EEEEEESBTB.....TTCCTHHHHHHHHHHHHHHH...TTESEEEEE.STSSSSSHHHHHHHHH.HHHHHHHTSEE....EEEC-TTSCHHH..HHHH CS
  Metallophos   2 rilvigDlHl.....algggqlddllkllddllre...ekpdlvlla.GDlvdrgdlekellel.laalvkypipv....ylllGNHegfee..elln 83 
                  +il+++D+H+     ++g+++l++ ++l+d +++e   e+  ++ll  GD +++g++e++l++   ++ +++   +    +++ GNHe f++  ++l+
   CTQ26809.1  35 TILHTNDHHGhfwrnDYGEYGLAAQKTLVDGIRKEvaaEGGSVLLLSgGD-INTGVPESDLQDAePDFRGMN---LigydAMAVGNHE-FDNplSVLR 127
                  8*******************************8887778888888888**.*************99999995...33667********.777556666 PP

                  HHHHHHHH....HHHHEHH..........HCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEE CS
  Metallophos  84 kygylgif....sepwrsd..........aevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepgdewlkdlekrekadwvivlg 167
                  +++++++f    ++++++             + ++l +a++g +  +  +++ g      +++  + ++++++a+e  ++ +++l++ ek d++++ +
   CTQ26809.1 128 QQEKWAKFpflsANIYQKStgerlfkpwaLFKRGGLKIAVIGLT--TDDTAKIG------NPEYFTDIEFRKPAEEA-KLVIQELQQNEKPDVILATT 216
                  66666666777555555556533333333333355555555555..77777777......44446777777777776.6666667778********** PP

                  SSESS...CSSSCSCCHHHHHHHHHHTTESEEEEESSS CS
  Metallophos 168 Hsply...rgsgylfgdealedllkkygvdlvisGHtH 202
                  H+++y   +++++  gd ++++ l  + + ++++GH+ 
   CTQ26809.1 217 HMGHYdngNHGSNAPGDVEMARSLPAGSLAMIVGGHSQ 254
                  ************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4304.71
//
Query:       CTQ26810.1  [L=159]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-23   80.9   0.2      9e-23   80.7   0.2    1.1  1  tRNA_edit  Aminoacyl-tRNA editing domain


Domain annotation for each model (and alignments):
>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.2     5e-27     9e-23       8     122 ..      31     146 ..      23     147 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 5e-27
   tRNA_edit   8 eelaaalgvdpsaiaKtlvlkd..kkge..lvlvllpgdreldlkklakllgakklrlaseeelrellgvepGgvgPlglkaagvpvllDeslkeyptv 102
                  e++++lg +++++ Ktl++ +  +     l+++++p + +ldlkk+ak+lgakk+++a++   ++++g+ +Gg++Plg  ++++p+++D+ + e  t+
  CTQ26810.1  31 DEVVRKLGLNADQVYKTLLVAVngD--MkhLAVAVTPVAGQLDLKKVAKALGAKKVDMADPMVAQRITGYLVGGISPLGQ-KKRLPTVIDAPAQEFATI 126
                 6899*****************9644..345*************************************************9.8***************** PP

   tRNA_edit 103 vvgagengatlelspedlrk 122
                 ++++g++g  +el+  dl +
  CTQ26810.1 127 YISGGKRGLDIELAASDLAQ 146
                 *************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1256.17
//
Query:       CTQ26811.1  [L=264]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-35  123.1   0.0    2.3e-35  122.8   0.0    1.0  1  TraB      TraB family


Domain annotation for each model (and alignments):
>> TraB  TraB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   0.0   1.3e-39   2.3e-35      12     254 ..      34     263 ..      26     264 .] 0.88

  Alignments for each domain:
  == domain 1  score: 122.8 bits;  conditional E-value: 1.3e-39
        TraB  12 syLfGTiHvskksvyplspeveealeksdtvvvEldlsddtdeatqkelaklkllpdgktlsdllseelyarlqkalakrglplaaldkmkP.wllall 109
                 ++L+G+iH++  ++ p ++++ + ++++d+++vE+d+s      + + ++    lp+ ++l+++ls+++++ l++++ ++gl++  +d  +P w +a++
  CTQ26811.1  34 LHLVGSIHMGTRDMAPPPAKLLKKIRQADALIVEADIS-----GNETPFS---NLPTYPPLAERLSDAQLSELEARAGELGLSVGLFD-SQPlWQVAMV 123
                 79***********************************3.....2233333...3444569*******************999996666.5666****** PP

        TraB 110 lslaelakkkagldpel.vDrylaktakragkpvgglEtveeqlsllsslpdeeqlealeetldeleeakdlleelveaykegdleal.eleaeaeeef 206
                 l++++   +k+gl p++ +D +l  +a++ +++v +lE ++ q++ll +lpd   ++ le+tl ++++   ll+ ++  + e+   +     +  ++ +
  CTQ26811.1 124 LQATQA--QKLGLRPDYgIDYQLLMAARESNIAVMELEGADSQIALLRDLPD-GGMALLEDTLTHWRTNARLLQVMIGWWLEQPPSRGaV--SLPTTFS 217
                 ******..***************************************65665.56788899******99999**********99988841..4778899 PP

        TraB 207 pelkevlldeRnrrwaekieallkepgsvfvaVGagHlaGedgvlalL 254
                 + l++vl+++Rn +w e + a    pg+++vaVGa+Hl Ge +++++L
  CTQ26811.1 218 QSLYDVLMHQRNLAWRETLLA--LPPGRYVVAVGALHLYGEGNLPDML 263
                 9*******************8..566********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2013.79
//
Query:       CTQ26812.1  [L=30]
Description: hypothetical protein CH1034_130263 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       109  (0.00607954); expected 358.6 (0.02)
Passed bias filter:                       89  (0.00496402); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.24s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 247.35
//
Query:       CTQ26813.1  [L=833]
Description: copper transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-51  173.6   4.0    6.6e-51  173.6   4.0    1.8  2  Hydrolase       haloacid dehalogenase-like hydrolase
    4.5e-47  159.9   0.8    4.5e-47  159.9   0.8    2.7  3  E1-E2_ATPase    E1-E2 ATPase
    4.1e-28   97.6   0.4    1.7e-15   57.2   0.0    2.6  2  HMA             Heavy-metal-associated domain
    1.7e-09   37.8   0.9      3e-06   27.2   0.8    2.3  2  Hydrolase_3     haloacid dehalogenase-like hydrolase
    4.3e-07   30.5   0.6    3.9e-06   27.4   0.3    2.7  2  HAD             haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.041   14.0   0.0       0.19   11.8   0.0    1.9  1  HAD_2           Haloacid dehalogenase-like hydrolase
       0.13   12.2   5.3        3.3    7.7   0.2    3.9  4  T2SSF           Type II secretion system (T2SS), protein F
       0.91    9.2  12.4      0.013   15.2   4.7    1.8  2  tRNA-synt_2_TM  Transmembrane region of lysyl-tRNA synthetase
        1.8    9.0  17.5      0.071   13.5   0.6    3.6  3  CstA_5TM        5TM C-terminal transporter carbon starvation 


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.6   1.1e+04      38     156 ..     145     157 ..     120     206 .. 0.50
   2 !  173.6   4.0   3.3e-54   6.6e-51       2     210 .]     517     731 ..     516     731 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.6
                 HHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  38 sehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagie 136
                 s   + +a+ +                                                                                        
  CTQ26813.1 145 SAAELVQAVEK---------------------------------------------------------------------------------------- 155
                 33333333311........................................................................................ PP

                 EEEEESSEHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 137 vvlltgdnpetaeraanqlG 156
                                   +G
  CTQ26813.1 156 ------------------AG 157
                 ..................11 PP

  == domain 2  score: 173.6 bits;  conditional E-value: 3.3e-54
                 SEEEEESBTTTBCHHHHHHHHHHHH......CHHHHHHHHHHHHCHHHHHH.HHHHHHHHHHHHHHHHETTTE........HHHHTHHHHHHHH.HCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxx.xxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsa......alalaaaletgsehpigkal.vaaakarsgaltgfatfigrg........ayaigkpewltal.dipp 84 
                 +t+vfDk+GTLt+g+p+v+ v   a      al laaale gs hp+++a+  +aa++  ++++gf+t+ g g        +++ g++ +l+++   + 
  CTQ26813.1 517 DTLVFDKTGTLTEGKPQVVAVKTFAgvdehtALRLAAALEQGSSHPLARAIlDKAADGPLPEVSGFRTLRGLGvsgeaeghRLLLGNQALLNEQhINTA 615
                 79*************************************************88999999***********************************88889 PP

                 HHHHHHHHHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  85 dlgaaigsaqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkva 181
                 ++++++++  s+g t +ll  +++a a+f+i dp  ++++ ++a+a+L+++g+++v+ltgdnp+ta+++a+++G          ++e++a+++p+gk  
  CTQ26813.1 616 EVESEMTAQASRGATPVLLavDGQAAALFAIRDP--LREDSVDALARLHRQGYRLVMLTGDNPTTAKAIAKEAG----------IDEVIAGVLPDGKAD 702
                 9******************999************..**************************************..........6666*********** PP

                 HHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 182 aireLqgkpeevamVGDgvnDaaalaaAg 210
                 ai++Lq ++++vamVGDg+nDa+ala+A+
  CTQ26813.1 703 AIKRLQSQGHKVAMVGDGINDAPALAQAD 731
                 ****************************8 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.43   8.5e+02     145     156 ..     210     227 ..     155     257 .. 0.56
   2 !  159.9   0.8   2.3e-50   4.5e-47       2     180 ..     319     499 ..     318     500 .. 0.99
   3 ?   -1.6   0.4      0.85   1.7e+03     106     153 ..     765     811 ..     742     821 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.43
                   T......HHHHHHHHHHH CS
  E1-E2_ATPase 145 a......eallralallv 156
                   +       +l+ +l++l 
    CTQ26813.1 210 VsddnrsLWLVIGLVTLA 227
                   255554433333222222 PP

  == domain 2  score: 159.9 bits;  conditional E-value: 2.3e-50
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTS CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkia 98 
                   l+pp+a+v+  + e++ + +e++ G  + l +gdrvp+Dg+i +g+a +de++LTGE +p +k  gd +++Gtvv +g++ + + a+g++t+l++i+
    CTQ26813.1 319 LTPPSARVVTPEGEKDLPLAEVQAGMTLRLTTGDRVPVDGMISQGEAWFDEAMLTGEPVPQQKGDGDAIHAGTVVQDGSVLFTASAVGSQTTLARII 415
                   89*********************************************************************************************** PP

                   TTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT..HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  99 rlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla..eallralallvaaiPcaLplavplalalgarrlak 180
                   r+v++a+s+k+++ + +dk+++v+vp+v++ial+ ++i+++ g  ++  ++l+ a ++l++a+PcaL+la+p++++ g++r+a+
    CTQ26813.1 416 RMVRQAQSSKPEIGQLADKISAVFVPAVVVIALISAAIWYFFGPAPQivYTLVIATTVLIIACPCALGLATPMSIISGVGRAAE 499
                   **********************************************9*9********************************996 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.85
                   ----HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT....HHHHHHHH CS
  E1-E2_ATPase 106 skktplqkkldklgkvlvpvvlliallvflialllgksla....eallrala 153
                    +k+ l ++ ++l + +v  +l i +++ ++++l+g  l+           a
    CTQ26813.1 765 ISKATLRNMKQNLLGAFVYNSLGIPIAAGILWPLTGTLLNpvvaG-----AA 811
                   567888888899999999999999999999999998887633331.....22 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.1   7.9e-13   1.6e-09       3      61 ..       8      61 ..       6      62 .. 0.96
   2 !   57.2   0.0   8.3e-19   1.7e-15       3      61 ..     103     158 ..     101     159 .. 0.97

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 7.9e-13
         HMA  3 rvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagy 61
                  +g+ C++C+++v+++L+  p+Ve+++v l   ++ V+g+a++    ++i ++++agy
  CTQ26813.1  8 TLDGLSCGHCVKRVKESLEQRPDVEQAEVTLT--EAHVTGSASA---QALIDTVKQAGY 61
                578*****************************..9*********...99*********9 PP

  == domain 2  score: 57.2 bits;  conditional E-value: 8.3e-19
         HMA   3 rvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagy 61 
                  + gm Ca+C+++v+ +L+++pgV+++ v+la++t+ V+g+a++    ++++a+ekagy
  CTQ26813.1 103 LINGMSCASCVSRVQNALAAVPGVSQARVNLAERTALVMGSASA---AELVQAVEKAGY 158
                 589*****************************************...***********9 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00082       1.6      18      58 ..     652     692 ..     646     696 .. 0.90
   2 !   27.2   0.8   1.5e-09     3e-06     196     255 .]     704     763 ..     698     763 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00082
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEE CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelgldlpv 58 
                  e +++a+++l+ +g+ +v  TG ++++++ +++e g+d  +
   CTQ26813.1 652 EDSVDALARLHRQGYRLVMLTGDNPTTAKAIAKEAGIDEVI 692
                  7789********************************99544 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 1.5e-09
                  HHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 196 akelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVakal 255
                  +k+l+ +  +v+ +GDg ND + L +a++g+Amg +s+ +++ A  +   ++ +GVa+al
   CTQ26813.1 704 IKRLQSQGHKVAMVGDGINDAPALAQADVGIAMGGGSDVAIETAAITLMRHSLHGVADAL 763
                  68889999*************************************99999999****997 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.95   1.9e+03       2      36 ..     520     554 ..     519     574 .. 0.78
   2 !   27.4   0.3   1.9e-09   3.9e-06      78     187 ..     639     727 ..     582     728 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.95
         HAD   2 lfDfDgTLldgdslelllrfllrrgaprlwralre 36 
                 +fD  gTL+ g +  + ++ +++++++ ++r++++
  CTQ26813.1 520 VFDKTGTLTEGKPQVVAVKTFAGVDEHTALRLAAA 554
                 78888999999999999999999988887666554 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 1.9e-09
         HAD  78 aevirpklldp...galellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidlee 173
                 +++++ ++ dp   + +++la+ +++G+r+v+++g +   ++++++e g+dev+a       +l  +            k++a+++         + ++
  CTQ26813.1 639 QAAALFAIRDPlreDSVDALARLHRQGYRLVMLTGDNPTTAKAIAKEAGIDEVIAG------VLPDG------------KADAIKR------LQSQGHK 713
                 344444444444449999999999*************************8888888......33333............4445555......2225555 PP

         HAD 174 vvayGDspsDlpll 187
                 v  +GD+++D p+l
  CTQ26813.1 714 VAMVGDGINDAPAL 727
                 8999*******998 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.5e-05      0.19      82     173 ..     652     732 ..     649     736 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-05
       HAD_2  82 dgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagi 173
                 ++  ++L  L+++gy+l   T  +  +++   ++ gi++++  ++           p+  + a+++l+ + ++v +vGD ++D  a  +a +
  CTQ26813.1 652 EDSVDALARLHRQGYRLVMLTGDNPTTAKAIAKEAGIDEVIAGVL-----------PDGKADAIKRLQSQGHKVAMVGDGINDAPALAQADV 732
                 67889999********************99999999866555544...........55558999*******************988777665 PP

>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.2    0.0016       3.3      61     123 ..     143     202 ..     111     204 .. 0.79
   2 ?   -2.4   0.1       2.3   4.5e+03      14      37 ..     410     434 ..     402     453 .. 0.48
   3 ?   -2.6   0.0       2.5   4.9e+03      11      42 ..     541     571 ..     537     580 .. 0.64
   4 ?    4.5   0.0     0.016        32      90     123 ..     769     802 ..     752     803 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0016
                 -HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTXXXXXXXXXXXXXXXXXX CS
       T2SSF  61 pelvvqlirageeggnLaevLerlaeyleeerelrrkllaallepllllvvallvllillail 123
                 +  ++ l++a+e+ g  ae++e   ++l+++ +++   la +   +  ++vallv++++++  
  CTQ26813.1 143 SASAAELVQAVEKAGYGAEAIE---DDLQRRDRQQETALATMKRFRWQAIVALLVGVPVMVWG 202
                 6667777777777777777665...8999999999999999999999***********99875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.3
                 -HHHHHHHHHHHHS.SHHHHHHHHH CS
       T2SSF  14 plveaLellaeeae.ngplaeelkr 37 
                 +l+++++++ + ++  +++++  ++
  CTQ26813.1 410 TLARIIRMVRQAQSsKPEIGQLADK 434
                 4444444444444333333333222 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.5
                 TT--HHHHHHHHHHHHSSHHHHHHHHHHHHHH CS
       T2SSF  11 aGvplveaLellaeeaengplaeelkriarrl 42 
                 aGv   +aL+l+a+   +g   +  ++i+++ 
  CTQ26813.1 541 AGVDEHTALRLAAALE-QGSSHPLARAILDKA 571
                 5666677777777766.555555555555554 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHTTXXXXXXXXXXXXXXXXXX CS
       T2SSF  90 eerelrrkllaallepllllvvallvllillail 123
                   r+++++ll a+ +  l +++a+ +l++l + l
  CTQ26813.1 769 TLRNMKQNLLGAFVYNSLGIPIAAGILWPLTGTL 802
                 67899************************98865 PP

>> tRNA-synt_2_TM  Transmembrane region of lysyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   4.7   6.5e-06     0.013      64     185 ..     177     296 ..     175     309 .. 0.86
   2 ?   -3.5   0.9       3.5     7e+03      14      27 ..     444     458 ..     431     485 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.5e-06
  tRNA-synt_2_TM  64 AlaarkriAwwllvvylvlllllnavllvasdlreqvaedinelvglavqvvvlvlLllarkeFyarvrrGallkAllvlvaglavatllgwgL. 157
                     Ala+ kr  w  +v++lv + ++   ++ +    + +++d n  + l++ +v l++++ a   Fy r++  +l  + +++ + +a++t ++w   
      CTQ26813.1 177 ALATMKRFRWQAIVALLVGVPVMVWGMIGD----NMMVSDDNRSLWLVIGLVTLAVMVFAGGHFY-RSAWKSLKNGTATMDTLVALGTGVAWLYs 266
                     9**************999999888877777....56666667888999****************9.777889999999*************9755 PP

  tRNA-synt_2_TM 158 ..velfPgsLeeeeRllwalnrvlglalvd 185
                       v+l+P+  + e R l+  ++++ + l++
      CTQ26813.1 267 msVNLWPQWFPMEARHLYYEASAMIIGLIN 296
                     55***********99999998888887775 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.5
  tRNA-synt_2_TM  14 gvlavls.llasvsp 27 
                     +v+a++s ++++++ 
      CTQ26813.1 444 VVIALISaAIWYFFG 458
                     333333212333333 PP

>> CstA_5TM  5TM C-terminal transporter carbon starvation CstA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   3.2       1.3   2.6e+03      52     106 ..     224     278 ..     175     282 .. 0.65
   2 ?   13.5   0.6   3.6e-05     0.071      13      93 ..     401     477 ..     395     495 .. 0.73
   3 ?    4.7   0.7     0.019        37      26      94 ..     751     821 ..     743     830 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.3
    CstA_5TM  52 iavalavllllwggintlWplFGa.aNQlLAalaLlvvtvwllktgrkalvtliPm 106
                 +++a++v+++ ++ + + W+     +  +   +aL ++++wl++++ +++  ++Pm
  CTQ26813.1 224 VTLAVMVFAG-GHFYRSAWKSLKNgTATMDTLVALGTGVAWLYSMSVNLWPQWFPM 278
                 3444444442.224566665443202333345788899999998788888888887 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.6e-05
    CstA_5TM  13 alfalTtlDtatRlaRyilqellgelkkkaltnkyvatliavalavllllwggintlWplFGaaNQlLAalaLlvvtvwll 93 
                 ++ a+ +  t +R+ R++ q   ++ +  +l++k+ a ++ ++++++l  ++   ++W  FG a Q++ +l++++++++++
  CTQ26813.1 401 TASAVGSQTTLARIIRMVRQAQSSKPEIGQLADKISAVFVPAVVVIAL--IS--AAIWYFFGPAPQIVYTLVIATTVLIIA 477
                 444555666788999999999988888778899999999999999999..44..68***********97776666555554 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.019
    CstA_5TM  26 laRyilqellgelk.....kkaltnkyvatliavalavllllwggintlWplFGa.aNQlLAalaLlvvtvwllk 94 
                 l+R +l+ ++++l+      ++++++++++++   l++ +    +  +lWpl G+  N ++A+ a+++ ++ +++
  CTQ26813.1 751 LMRHSLHGVADALAiskatLRNMKQNLLGAFVYNSLGIPI----AAGILWPLTGTlLNPVVAGAAMALSSITVVS 821
                 5555555555555543222222444555555555555555....4569******846*****9999999888884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1073  (0.0598472); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 5693.48
//
Query:       CTQ26814.1  [L=136]
Description: DNA-binding transcriptional activator of copper-responsive regulon genes [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-19   68.2   0.2      1e-18   67.1   0.0    1.6  2  MerR_1         MerR HTH family regulatory protein
    1.9e-16   60.4   2.3    3.7e-16   59.4   1.9    1.6  2  MerR-DNA-bind  MerR, DNA binding
    1.9e-16   59.5   0.1      4e-16   58.5   0.1    1.6  1  MerR           MerR family regulatory protein
      0.009   16.0   0.0      0.013   15.5   0.0    1.3  1  DUF1836        Domain of unknown function (DUF1836)
  ------ inclusion threshold ------
      0.078   13.3   0.4        1.1    9.6   0.0    2.1  2  Tup_N          Tup N-terminal
      0.093   12.8   0.0       0.57   10.3   0.0    2.2  2  HTH_Mga        M protein trans-acting positive regulator (MGA


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   3.5e-22     1e-18       1      66 [.       1      67 [.       1      69 [. 0.95
   2 ?   -2.4   0.0       1.8   5.3e+03      41      50 ..      93     102 ..      92     105 .. 0.70

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 3.5e-22
                EEHHHHHHHHTS-HHHHHHHHHHTT-S-EE.-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XX CS
      MerR_1  1 ysigevakilgvtthtlrywekegllkpkr.teggrryYtdedierLklikyLlkrGltlkgikkll 66
                ++i++vak++g+t++ +r++e++gl+ p+  +e+g+r Y+++++++L l ++ ++ G++l+++++l 
  CTQ26814.1  1 MNISDVAKKTGLTSKAIRFYEEKGLVTPPLrSENGYRTYSQQHLDELTLLRQARQVGFNLEECRELV 67
                89***********************777777*********************************986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
                 HHHHHHHHHH CS
      MerR_1  41 edierLklik 50 
                 ++i++L++++
  CTQ26814.1  93 NHIRELQNMR 102
                 6788888776 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.1   6.3e+03      10      21 ..       7      18 ..       6      18 .. 0.87
   2 !   59.4   1.9   1.2e-19   3.7e-16       2      65 .]      45     108 ..      44     108 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.1
                   HHHTT--HHHHH CS
  MerR-DNA-bind 10 arrlGFsLdeIr 21
                   a+ +G++ + Ir
     CTQ26814.1  7 AKKTGLTSKAIR 18
                   8999**999987 PP

  == domain 2  score: 59.4 bits;  conditional E-value: 1.2e-19
                    HHHHHHHHHHHTT--HHHHHHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind   2 eRLkfIrrarrlGFsLdeIrelLalyddrappcqdvrallarklaeleeriaeLqalraeLaal 65 
                    + L++ r+ar++GF L+e+rel al +d++++++dv++ + +k+a++e +i+eLq +ra+L al
     CTQ26814.1  45 DELTLLRQARQVGFNLEECRELVALFNDPSRHSADVKKRTLEKVADIENHIRELQNMRAHLLAL 108
                    7899*********************************************************876 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.1   1.4e-19     4e-16       1      38 []       2      39 ..       2      39 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 1.4e-19
                EHHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                +I++vA++tG++++++R+YE++GL+ pp R+e+GyR Y
  CTQ26814.1  2 NISDVAKKTGLTSKAIRFYEEKGLVTPPLRSENGYRTY 39
                69**********************************99 PP

>> DUF1836  Domain of unknown function (DUF1836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.3e-06     0.013      31      90 ..       8      73 ..       1      91 [. 0.78

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.3e-06
     DUF1836 31 edkvltktminNYvKkkllekpek.....KkYskeqvarlilitilknv.lsieeikklLklllks 90
                +++ lt+ +i  Y  k+l+++p +     + Ys++++ +l l+++ ++v +++ee+++l+ l+++ 
  CTQ26814.1  8 KKTGLTSKAIRFYEEKGLVTPPLRsengyRTYSQQHLDELTLLRQARQVgFNLEECRELVALFNDP 73
                3488999******999999988642113456*****************99*******999887765 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.094   2.8e+02      30      47 ..      36      53 ..      30      56 .. 0.80
   2 ?    9.6   0.0   0.00037       1.1      17      52 ..      74     109 ..      59     112 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.094
       Tup_N 30 yelkiqsqiqElqqirqt 47
                y +  q++++El+ +rq+
  CTQ26814.1 36 YRTYSQQHLDELTLLRQA 53
                666679999****99996 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00037
       Tup_N  17 sqeasslkaqkdeyelkiqsqiqElqqirqtlyeLe 52 
                 s++   +k+++ e  + i+++i+Elq++r +l  L 
  CTQ26814.1  74 SRHSADVKKRTLEKVADIENHIRELQNMRAHLLALA 109
                 55555666666666677**************99886 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00019      0.57      21      38 ..       1      18 [.       1      20 [. 0.93
   2 ?   -0.8   0.0      0.54   1.6e+03      41      50 ..      63      72 ..      61      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00019
     HTH_Mga 21 ltldelakeLglseltlq 38
                ++++++ak++gl++++++
  CTQ26814.1  1 MNISDVAKKTGLTSKAIR 18
                8999*************9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.54
     HTH_Mga 41 iseLnelFpe 50
                ++eL +lF++
  CTQ26814.1 63 CRELVALFND 72
                899*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1014.24
//
Query:       CTQ26815.1  [L=152]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-19   69.9   0.2    2.9e-19   69.2   0.2    1.3  1  NfeD             NfeD-like C-terminal, partner-binding
  ------ inclusion threshold ------
      0.016   15.2   4.3      0.024   14.7   4.3    1.3  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
      0.094   12.7   2.3       0.36   10.8   0.0    2.2  2  FixQ             Cbb3-type cytochrome oxidase component FixQ
       0.14   11.4   0.2       0.16   11.2   0.2    1.1  1  Peptidase_U4     Sporulation factor SpoIIGA
       0.28   11.1   2.0        0.4   10.6   1.1    1.8  2  RseC_MucC        Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> NfeD  NfeD-like C-terminal, partner-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.2   8.2e-23   2.9e-19       1      84 []      59     149 ..      59     149 .. 0.91

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 8.2e-23
                 XXXXXXXXXXXXXXXXS---SSS--S.....S---.GGTTSEEEEEE-B..S-EEEEETTEEEEEE-.SSB-TT-EEEEEEE-SSSEEEEE CS
        NfeD   1 ifavvsvlllvllrplllkklkkkek....ktnae.aliGkegvvledi..gtGrvkvdGeeWsarsegeiekgerVrVveveGltliVep 84 
                 +fav+++l+ +l+ ++l+k+ k+++     +++++ +l+G++ ++ +++  g+G+v+v++++W +++++++++g++V+V++veG+tl ++p
  CTQ26815.1  59 LFAVLTLLAAWLWSKWLRKRVKTQRPadaqLNQRGqQLVGRRLTLDAPLvnGRGHVRVGDSSWPVIADEDFAAGSKVEVIAVEGITLRIRP 149
                 69*****************996644367865777778*************769***********************************998 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   4.3   6.6e-06     0.024      34      96 ..      20      84 ..      10      95 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.6e-06
  Phage_holin_3_6 34 gsgagllgaagvlallalllllvalalala.alwlaali.vaavllvlagvlalvglkklkkakp 96
                     + +a +lg+ g+l+  +++ ++ +++ +l  ++w +     a++ l++a++   + +k++k ++p
       CTQ26815.1 20 LLAAEMLGGSGYLLWSGVAGVVTGALTWLLpLSWEWQGTlFAVLTLLAAWLWSKWLRKRVKTQRP 84
                     56778999999999999999888887677434665555514566677777778889999998765 PP

>> FixQ  Cbb3-type cytochrome oxidase component FixQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   1.1      0.14   5.1e+02      12      33 ..      15      36 ..      12      37 .. 0.88
   2 ?   10.8   0.0    0.0001      0.36      14      44 ..      57      87 ..      54      91 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.14
        FixQ 12 swgllflvllfygvviyafrpg 33
                s+g l+l++ ++g   y++++g
  CTQ26815.1 15 SLGGLLLAAEMLGGSGYLLWSG 36
                67889999999*********97 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0001
        FixQ 14 gllflvllfygvviyafrpgnrkdfedaAnl 44
                g+lf vl++++++++  + ++r +  + A++
  CTQ26815.1 57 GTLFAVLTLLAAWLWSKWLRKRVKTQRPADA 87
                9********************9998887765 PP

>> Peptidase_U4  Sporulation factor SpoIIGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   4.4e-05      0.16      85     145 ..      12      87 ..       1     105 [. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.4e-05
  Peptidase_U4  85 flkalllfylvsfllgGilfalsyll...........lkskn.......llvlllgalvaylllkllvkiikkkkkkek 145
                   f+  l+ ++l++ +lgG  ++l++ +           l           +l+ +l++l+a+l+ k+l k +k+++  ++
    CTQ26815.1  12 FWLSLGGLLLAAEMLGGSGYLLWSGVagvvtgaltwlL---PlswewqgTLFAVLTLLAAWLWSKWLRKRVKTQRPADA 87 
                   67777788888888888777777755555444444441...04445566889999999999999988777776665444 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.1   0.00011       0.4      81     122 ..      39      83 ..      11      89 .. 0.83
   2 ?   -3.1   0.0       1.9   6.9e+03      45      60 ..     126     141 ..     118     146 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
   RseC_MucC  81 gallgsall...gssellaalgallglvlgflivrllskrlkkks 122
                 g++ g + +   +s e+   l+a+l l++++l+ ++l+kr+k ++
  CTQ26815.1  39 GVVTGALTWllpLSWEWQGTLFAVLTLLAAWLWSKWLRKRVKTQR 83 
                 444444433458999*************************98765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.9
   RseC_MucC  45 eigakvGdkVevgiee 60 
                 + ++++G kVev   e
  CTQ26815.1 126 DEDFAAGSKVEVIAVE 141
                 5567788888886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1204.78
//
Query:       CTQ26816.1  [L=305]
Description: putative protease, membrane anchored [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-33  116.7   1.3    1.1e-33  116.7   1.3    2.1  2  Band_7    SPFH domain / Band 7 family
    5.8e-07   29.5   1.7    1.2e-06   28.5   1.7    1.5  1  Band_7_C  C-terminal region of band_7
  ------ inclusion threshold ------
      0.069   12.8   0.2       0.14   11.8   0.2    1.5  1  Band_7_1  SPFH domain-Band 7 family
        0.1   12.7   0.0       0.62   10.2   0.0    2.0  2  DUF1997   Protein of unknown function (DUF1997)
        1.8    8.7  14.0       0.27   11.5   6.2    2.4  2  Flot      Flotillin


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   1.3   3.1e-37   1.1e-33       2     177 ..      22     203 ..      21     204 .. 0.95
   2 ?   -1.4   3.5      0.57     2e+03     152     178 .]     207     233 ..     203     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: 116.7 bits;  conditional E-value: 3.1e-37
      Band_7   2 iieegevgvvvrfGklsrvlepGlhfilPfgrsvt.vvsvrvqtldvsvsltvptkDglpvtidvtviyrvpddapklvaaveresanldnlirrvles 99 
                 i+++g+   v+rfG+  ++l+pGl++++Pf +++  +v++  q+ld++  ++v+++D+ +vtid++  ++v  dapk++++v     nl++ i +++  
  CTQ26816.1  22 IVPQGYQWTVERFGRFTQTLQPGLSLVVPFMDRIGrKVNMMEQVLDIPS-QEVISRDNANVTIDAVCFIQV-IDAPKAAYEV----SNLEQAIVNLTMT 114
                 79********************************99*************.*********************.**********....************* PP

      Band_7 100 alrevisemtleellsnreelaeelknelneqlrkyGvevldvritdidpppevaqalaakqaaeaea...........qaeiaraeae 177
                 ++r v+++m+l+e+ls r+ ++ +l   + ++ + +Gv +++v i+d++pp+e++++++a ++ae+++           qaei +ae+e
  CTQ26816.1 115 NIRTVLGSMELDEMLSQRDSINTRLLHIVDDATNPWGVKITRVEIRDVRPPAELIASMNAQMKAERTKrayileaegvrQAEILKAEGE 203
                 ********************************************************************666666666666666666665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.57
      Band_7 152 evaqalaakqaaeaeaqaeiaraeaea 178
                 ++ +a  ++q a  +a+a+++ aeaea
  CTQ26816.1 207 QILKAEGERQSAFLQAEARERSAEAEA 233
                 66677789999*************997 PP

>> Band_7_C  C-terminal region of band_7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   1.7   3.3e-10   1.2e-06       1      59 [.     237     296 ..     237     299 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 3.3e-10
    Band_7_C   1 ekvaeaikkpggqeAvsLrvAeqYveaFgkLAkesnt..vilPanvgdvssmvaqalsiyk 59 
                 ++v+ ai++ g  +A+++ vA++Y +a+++++  +n+  v++P +++ + + +a+  +++k
  CTQ26816.1 237 QMVSSAIAS-GDIQAINYFVAQKYTDALQQIGAANNSkvVLMPLDASSLMGSIAGISELIK 296
                 5899****9.*********************8665555499**************999887 PP

>> Band_7_1  SPFH domain-Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   3.9e-05      0.14     113     208 ..      84     177 ..      78     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.9e-05
    Band_7_1 113 dpakllreivGtdgefdteeiseqlkslivtrlsdvlaeskipvldlaakseelaeklkealkeelaeyGlelekleienislpeevekaldkras 208
                 d+  +++ i   +  ++ +++++ + +l +t++  vl++ +  + ++ ++ +++  +l + ++++ +  G++++++ei+++  p e+   ++++ +
  CTQ26816.1  84 DAVCFIQVIDAPKAAYEVSNLEQAIVNLTMTNIRTVLGSME--LDEMLSQRDSINTRLLHIVDDATNPWGVKITRVEIRDVRPPAELIASMNAQMK 177
                 77778877777888888889999999999999999998765..568999*************************************9999988765 PP

>> DUF1997  Protein of unknown function (DUF1997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00017      0.62      27      95 ..      24      96 ..      11     140 .. 0.82
   2 ?   -0.0   0.0      0.24   8.7e+02      63      95 ..     153     183 ..     134     201 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00017
     DUF1997 27 eetfrltvgplkflglevePvvdlrvepee..egvvrlesedcelkgleave..ndrfsldlkgaleleeegs 95
                 ++++ tv +++ ++ +++P + l v   +  + +v++  + + ++  e++   n + ++d ++ +++ + ++
  CTQ26816.1 24 PQGYQWTVERFGRFTQTLQPGLSLVVPFMDriGRKVNMMEQVLDIPSQEVISrdNANVTIDAVCFIQVIDAPK 96
                689***********************99886678****************99888888888888888877775 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.24
     DUF1997  63 esedcelkgleavendrfsldlkgaleleeegs 95 
                 + +++e+++++ +   ++ +++++++++e++++
  CTQ26816.1 153 KITRVEIRDVRPP--AELIASMNAQMKAERTKR 183
                 4456899999888..889999999999999885 PP

>> Flot  Flotillin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.9     0.093   3.3e+02       2      20 ..     178     196 ..     169     209 .. 0.50
   2 ?   11.5   6.2   7.4e-05      0.27       1      57 [.     210     266 ..     210     274 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.093
        Flot   2 AeaeAeaakleAeAkraka 20 
                 Ae   +a +leAe+ r+  
  CTQ26816.1 178 AERTKRAYILEAEGVRQAE 196
                 4444445555555533332 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.4e-05
        Flot   1 eAeaeAeaakleAeAkrakaeaeAegiralnEAenalseeqialqvklallealPei 57 
                 +Ae e+++a l+AeA +  aeaeA +++++  A    + ++i   v+ +  +al +i
  CTQ26816.1 210 KAEGERQSAFLQAEARERSAEAEARATQMVSSAIASGDIQAINYFVAQKYTDALQQI 266
                 59*****************************99988888888888877777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1102  (0.0614647); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2225.66
//
Query:       CTQ26817.1  [L=225]
Description: putative transporter subunit: ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-31  108.6   0.0    5.3e-31  108.0   0.0    1.3  1  ABC_tran         ABC transporter
    1.4e-11   44.3   0.3    1.8e-07   30.8   0.1    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
    7.6e-07   28.8   0.0    1.9e-06   27.5   0.0    1.6  1  AAA_29           P-loop containing region of AAA domain
    8.7e-06   25.8   0.3    0.00011   22.2   0.1    2.0  2  Rad17            Rad17 P-loop domain
    1.6e-05   25.4   0.0    2.3e-05   24.9   0.0    1.3  1  AAA_16           AAA ATPase domain
    1.7e-05   24.8   1.1     0.0026   17.6   0.1    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    2.8e-05   24.6   0.6    0.00037   20.9   0.6    2.2  1  AAA              ATPase family associated with various cellul
    6.9e-05   23.1   0.1    0.00025   21.3   0.1    1.8  1  AAA_22           AAA domain
     0.0002   21.9   0.6    0.00052   20.6   0.6    1.7  1  AAA_23           AAA domain
    0.00087   19.3   0.0     0.0016   18.4   0.0    1.5  1  ATPase_2         ATPase domain predominantly from Archaea
     0.0011   19.0   0.0      0.015   15.3   0.0    2.1  2  AAA_14           AAA domain
     0.0012   18.5   0.0     0.0093   15.6   0.0    2.0  2  AAA_25           AAA domain
     0.0013   18.7   0.6      0.015   15.3   0.6    2.2  1  NACHT            NACHT domain
     0.0016   17.3   0.0     0.0024   16.7   0.0    1.2  1  Adeno_IVa2       Adenovirus IVa2 protein
     0.0018   18.2   1.0      0.064   13.2   0.1    2.1  2  NTPase_1         NTPase
     0.0023   17.8   0.0     0.0048   16.8   0.0    1.5  1  RsgA_GTPase      RsgA GTPase
     0.0027   18.2   0.0     0.0061   17.1   0.0    1.6  1  AAA_18           AAA domain
     0.0056   16.7   0.1       0.11   12.5   0.0    2.3  2  AAA_5            AAA domain (dynein-related subfamily)
     0.0078   15.6   0.0      0.015   14.7   0.0    1.4  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.029   14.1   0.0    1.7  1  AAA_30           AAA domain
      0.011   15.5   0.0      0.013   15.3   0.0    1.2  1  AAA_11           AAA domain
      0.011   16.1   0.0      0.043   14.2   0.0    1.9  2  RNA_helicase     RNA helicase
      0.014   14.5   0.0      0.022   13.8   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
      0.023   14.9   0.1        1.9    8.8   0.1    2.5  1  SbcCD_C          Putative exonuclease SbcCD, C subunit
      0.027   14.2   0.0      0.077   12.7   0.0    1.5  1  AAA_15           AAA ATPase domain
      0.034   13.7   0.1      0.079   12.5   0.0    1.6  2  AAA_27           AAA domain
       0.05   14.0   0.8        5.5    7.4   0.1    2.2  2  AAA_17           AAA domain
      0.067   13.4   0.0       0.12   12.6   0.0    1.4  1  AAA_28           AAA domain
      0.087   12.2   0.0        5.5    6.4   0.0    2.1  2  TniB             Bacterial TniB protein
       0.12   12.1   0.2       0.28   10.9   0.1    1.6  1  Cytidylate_kin   Cytidylate kinase
       0.15   11.8   0.0       0.35   10.6   0.0    1.7  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.16   11.7   0.0       0.38   10.5   0.0    1.6  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   9.5e-34   5.3e-31       1     137 []      23     166 ..      23     166 .. 0.97

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 9.5e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........esdeeiekalsk 91 
                 l+n+s++l++ge   i+G++G+GKStLlk++a ll+pt+G++ +d++d+ + + e++r++++++ q+p lf ++ v++n        +++ +++++l+ 
  CTQ26817.1  23 LHNISFQLRAGEFKLITGPSGCGKSTLLKIIASLLSPTSGRLFFDDADVATLSPERYRQQVSYCAQTPALFGDS-VYDNlifpwqirNKQPDPQALLAD 120
                 79************************************************************************.*********98888888******* PP

                 STTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  92 lglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 l+  +l+++ +++s ++LSgG+kqrv+l r l   p++lllDE t+
  CTQ26817.1 121 LQRFGLDENMLEKSINELSGGEKQRVSLIRNLQFLPRVLLLDEITS 166
                 *******************************************985 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00023      0.13      25      53 ..      34      62 ..      22      87 .. 0.86
   2 !   30.8   0.1   3.2e-10   1.8e-07     133     213 ..     134     212 ..     105     219 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
                SEEEEEESTTSSHHHHHHHHHHHCTT.TT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAilFvLGersa 53
                +f+ i+Gp G+GKs ll  i  +L+ +s 
  CTQ26817.1 34 EFKLITGPSGCGKSTLLKIIASLLSPTSG 62
                699**************999888886655 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 3.2e-10
                 STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEE..E-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
       SMC_N 133 skelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfiv..islreemlekadklvgvtk 213
                 s+++LSgGek+ v  +L+  + ++ p+ + llDei +aLDe+n ++v e+++   ++ Q+ v  ++++++ +++ad+++ ++ 
  CTQ26817.1 134 SINELSGGEKQRV--SLIRNL-QFLPR-VLLLDEITSALDESNKQNVNEIIHGYATEKQVAVlwVTHDRNEISHADEVITLQP 212
                 3458******865..556444.44454.4589********************7777766544339************998765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   3.5e-09   1.9e-06      17      55 ..      28      67 ..      22      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 3.5e-09
      AAA_29 17 ieidlkg.atlltGpsGsGKSTllDAiqalLvpak.kvrfN 55
                ++++  g + l+tGpsG GKSTll  i+ lL p++ ++ f 
  CTQ26817.1 28 FQLRA-GeFKLITGPSGCGKSTLLKIIASLLSPTSgRLFFD 67
                44543.3599***********************99777765 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   1.9e-07   0.00011      46      70 ..      34      58 ..      19      64 .. 0.81
   2 ?    1.7   0.0      0.37   2.1e+02     118     165 ..     142     189 ..     104     206 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.9e-07
       Rad17 46 riLLisGPsGCgkstvvkvLskelg 70
                +  Li+GPsGCgkst +k+++  l+
  CTQ26817.1 34 EFKLITGPSGCGKSTLLKIIASLLS 58
                4679***************998776 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.37
       Rad17 118 kylklqklGddlrtdkklilvedlPnkfyrds.dalrevirkylrssea 165
                 + ++++ l  +l+   +++l++++ +    +  ++++e+i  y + ++ 
  CTQ26817.1 142 EKQRVS-LIRNLQFLPRVLLLDEITSALDESNkQNVNEIIHGYATEKQV 189
                 444555.567788888899999999999988878899999998887766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   4.1e-08   2.3e-05      25     151 ..      34     171 ..      21     194 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 4.1e-08
      AAA_16  25 elvllsGesGvGKsslvrellralekd.......ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.......... 106
                 e  l++G+sG+GKs+l++ ++  l+ +       ++ +++   ++++++++y a + al+ ++++  l  + + ++ ++++++l++ l+          
  CTQ26817.1  34 EFKLITGPSGCGKSTLLKIIASLLSPTsgrlffdDADVATLSPERYRQQVSYCAQTPALFGDSVYDNLIFPWQIRNKQPDPQALLADLQrfgldenmle 132
                 56699************9999877777765555523335555555566699988777777889999999998888999999999999887877777788 PP

      AAA_16 107 .avpelagaeasrllellkrllallsrderplvlvlDdlqwadeas 151
                  +++el+g e++r+     r l++l     p vl+lD++  a ++s
  CTQ26817.1 133 kSINELSGGEKQRVSLI--RNLQFL-----PRVLLLDEITSALDES 171
                 87777777766444322..223223.....3477777666555554 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   4.6e-06    0.0026       3      25 ..      37      59 ..      35      82 .. 0.78
   2 !    6.8   0.1    0.0094       5.3     219     273 ..     112     171 ..      64     202 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.6e-06
      AAA_21  3 vliGpNgsGKSnLLdaldllarl 25
                +++Gp g+GKS+LL+++  l + 
  CTQ26817.1 37 LITGPSGCGKSTLLKIIASLLSP 59
                69***************999764 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0094
      AAA_21 219 r........gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPk 273
                           ++f  +++  e +++elS G k+   l+  l  ++   ++ll+DE+ + L+ +
  CTQ26817.1 112 PdpqalladLQRFGLDENMLEKSINELSGGEKQRVSLIRNLQFLP---RVLLLDEITSALDES 171
                 244445555566666666667788999999999988888888888...***********9855 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.6   6.5e-07   0.00037       2     117 ..      37     203 ..      36     207 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.5e-07
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS...................................................ST CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsellsk...................................................yv 39 
                 l++Gp G+GK++l k +a+ l          ++++ ++s  + +++                                                    +
  CTQ26817.1  37 LITGPSGCGKSTLLKIIASLLsptsgrlffdDADVATLSPERYRQQvsycaqtpalfgdsvydnlifpwqirnkqpdpqalladlqrfgldenmlekSI 135
                 789*****************9444332222223344444444443366666677777777777777777777777777777777776666555555555 PP

                 THHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTH CS
         AAA  40 gesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldp 117
                  e +   ++ ++ +++ +  p +l++DEi +   ++       +++ vn++++    +k+    v v+ +t++ ++++ 
  CTQ26817.1 136 NELSGGEKQRVSLIRNLQfLPRVLLLDEITSALDES-------NKQNVNEIIHGYATEKQ----VAVLWVTHDRNEISH 203
                 555555555555555555779**********99888.......55556666655555555....788888887777765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   4.4e-07   0.00025       8     117 ..      36     184 ..      31     201 .. 0.62

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.4e-07
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.....erpevvfvtlpsstsskdllrellralglelka............................... 70 
                  ++tG+sG+GK+tll+ +++ l              +++v++  +     + + + +    +g++  +                               
  CTQ26817.1  36 KLITGPSGCGKSTLLKIIASLLSPT----SgrlffDDADVATLSPERYRQQVSYCAQTPALFGDSVYDnlifpwqirnkqpdpqalladlqrfgldenm 130
                 589******************9532....2457795555555555555555555555555555555556666666666335555555555554444444 PP

      AAA_22  71 erlsseellealeqalrarav...............ielliiDEaqh.lr.s.eealeeLrslln 117
                  ++s  el                            +++l++DE+   l+ s +++++e+ + + 
  CTQ26817.1 131 LEKSINELS-----------GgekqrvslirnlqflPRVLLLDEITSaLDeSnKQNVNEIIHGYA 184
                 444444444...........144445555555599999999999999888745889998876665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.6   9.3e-07   0.00052      21      64 ..      35      77 ..      22     190 .. 0.59

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 9.3e-07
      AAA_23 21 ltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdve 64
                + lItGp G+GK+T+l  i   L   ++rl  + + +  + ++e
  CTQ26817.1 35 FKLITGPSGCGKSTLLKIIASLLSPTSGRLFFD-DADVATLSPE 77
                459****************99999877776653.3444444444 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.9e-06    0.0016      21      56 ..      34      68 ..      25     139 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.9e-06
    ATPase_2 21 eiyfiYGpegsGKtaLlkeiienledkdkyviyyia 56
                e+ +i+Gp g+GK++Llk i++ l+     ++++++
  CTQ26817.1 34 EFKLITGPSGCGKSTLLKIIASLLSP-TSGRLFFDD 68
                6789*************988888855.445666665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.6e-05     0.015       3      39 ..      34      67 ..      32      98 .. 0.67
   2 ?    1.6   0.0      0.48   2.7e+02      65      84 ..     156     181 ..     116     196 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.6e-05
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesilyinld 39
                + ++itG+  +GK+tllk ++ +ll  +     + +d
  CTQ26817.1 34 EFKLITGPSGCGKSTLLKIIA-SLL--SPTSGRLFFD 67
                6799************97766.555..2333333333 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.48
      AAA_14  65 ktylflDEiqev......pewekalk 84 
                  ++l+lDEi  +      +++ +++ 
  CTQ26817.1 156 PRVLLLDEITSAldesnkQNVNEIIH 181
                 36899999988755544444444444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.7e-05    0.0093      30      65 ..      30      67 ..      11      87 .. 0.80
   2 ?    0.9   0.0      0.51   2.9e+02      15      38 ..     169     192 ..     105     200 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.7e-05
      AAA_25 30 lpagelallaGapgtGKttlaldlalava..tGkpwlg 65
                l+age+ l++G++g+GK+tl+  +a  ++  +G+ +++
  CTQ26817.1 30 LRAGEFKLITGPSGCGKSTLLKIIASLLSptSGRLFFD 67
                679*****************866665555668888887 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.51
      AAA_25  15 laapppprrwlvkgllpagelall 38 
                 ++++ + ++ +++g+  ++ +a+l
  CTQ26817.1 169 DESNKQNVNEIIHGYATEKQVAVL 192
                 222444444444444444444443 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.6   2.6e-05     0.015       4      25 ..      37      58 ..      35     211 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.6e-05
                EEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  4 ilqGeaGsGKTtLlqklalawa 25
                +++G++G+GK+tLl+ +a+++ 
  CTQ26817.1 37 LITGPSGCGKSTLLKIIASLLS 58
                699***************9985 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.3e-06    0.0024      91     134 ..      37      78 ..      18      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.3e-06
  Adeno_IVa2  91 viyGPtGsGksqllrnlissklisPiPetvifitPekdmipPee 134
                 +i GP G+Gks ll+ +  + l+sP+   ++f   ++  ++Pe 
  CTQ26817.1  37 LITGPSGCGKSTLLKII--ASLLSPTSGRLFFDDADVATLSPER 78 
                 79************955..569***********99999999986 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   0.00011     0.064       3      24 ..      37      58 ..      36      63 .. 0.89
   2 ?    3.9   0.1     0.082        46      83     142 ..     143     205 ..     120     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
                EEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1  3 fiTGppGvGKtTlvkkvlellk 24
                +iTGp+G GK+Tl+k +++ll+
  CTQ26817.1 37 LITGPSGCGKSTLLKIIASLLS 58
                69*************9999885 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.082
                 HHHHHHHHHHHHHH-EEEE---STT..GGG-HHHHHHHHHHHT.TTSEEEEE--SS--SHHHH CS
    NTPase_1  83 elalealrkalseadviviDEiGkm..ElkskkfkeaveevLk.sekpvlavihrrkdlalve 142
                 +  ++ +r+ +  + v+++DEi +   E + ++++e ++   + +++ vl+v h r++ +  +
  CTQ26817.1 143 KQRVSLIRNLQFLPRVLLLDEITSAldESNKQNVNEIIHGYATeKQVAVLWVTHDRNEISHAD 205
                 556677788777788999999987546888899999999888779999999999997555444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.6e-06    0.0048      90     121 ..      23      55 ..       8      73 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.6e-06
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallp 121
                  l++++ +l+  ++ ++ G+SG GKStL++ +++
   CTQ26817.1  23 LHNISFQLRAgEFKLITGPSGCGKSTLLKIIAS 55 
                  5678888887799***************98876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.1e-05    0.0061       2      39 ..      37      72 ..      37      89 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.1e-05
      AAA_18  2 lltGtpGvGKttlakeLskrlgfgvnlrdvakenglll 39
                l+tG++G+GK+tl k ++++l  +  ++ +++++  + 
  CTQ26817.1 37 LITGPSGCGKSTLLKIIASLL--SPTSGRLFFDDADVA 72
                69****************998..555555555444444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0    0.0002      0.11       3      24 ..      37      59 ..      36      67 .. 0.86
   2 ?    2.1   0.0      0.31   1.7e+02      58      79 ..     147     169 ..      95     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0002
                EEE--SSSSHHHHHHHGGGGB.S CS
       AAA_5  3 lLvGppGtgKselaerlaaal.n 24
                l+ Gp+G+gKs+l + +a++l  
  CTQ26817.1 37 LITGPSGCGKSTLLKIIASLLsP 59
                689***************99952 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.31
                 -------.G-SEEEEESGGG--H CS
       AAA_5  58 plvraar.egeilvlDEveraes 79 
                 +l r+ +  +++l+lDE++ a +
  CTQ26817.1 147 SLIRNLQfLPRVLLLDEITSALD 169
                 45555557789999999998763 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.6e-05     0.015      22      65 ..      34      76 ..      29      90 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.6e-05
  Mg_chelatase 22 gHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvag 65
                  + + l++Gp+G+GK+ l k ++sll+p s +  ++ a +a+++ 
    CTQ26817.1 34 EFK-LITGPSGCGKSTLLKIIASLLSPTSGRLFFDDADVATLSP 76
                  555.579********************99988888888777766 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.1e-05     0.029      19      46 ..      34      62 ..      27      90 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.1e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaa.g 46
                 ++++tGp G GK+t+lk ++ ++    g
  CTQ26817.1 34 EFKLITGPSGCGKSTLLKIIASLLSPTsG 62
                4899****************999877644 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   2.4e-05     0.013       9     114 ..      25     145 ..      19     211 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.4e-05
      AAA_11   9 aiksalseseitliqGPPGtgKTktivellsqllsr...........rkseeeksakpriLvCapSNaAv.Dellerllr....glldsegekykpkiv 91 
                 +i++ l+  e+ li GP G+gK+ t+++++++lls             +    +++ +++ +Ca++ a   D + + l+     + ++ + +    ++ 
  CTQ26817.1  25 NISFQLRAGEFKLITGPSGCGKS-TLLKIIASLLSPtsgrlffddadVATLSPERYRQQVSYCAQTPALFgDSVYDNLIFpwqiRNKQPDPQALLADLQ 122
                 6788899999************8.566777777633344555555442245567888889999987665324444443333323344444455555555 PP

      AAA_11  92 Rvgneeeriseavksvsleekve 114
                 R g +e+  +++++++s  ek++
  CTQ26817.1 123 RFGLDENMLEKSINELSGGEKQR 145
                 55555555555555555555555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   7.7e-05     0.043       3      23 ..      38      58 ..      36      88 .. 0.82
   2 ?   -1.0   0.0       4.2   2.3e+03      52      75 ..     158     181 ..     155     209 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.7e-05
  RNA_helicase  3 lyGpsgeGKStlakeLakall 23
                  ++Gpsg+GKStl k +a+ l+
    CTQ26817.1 38 ITGPSGCGKSTLLKIIASLLS 58
                  89************9887666 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 4.2
  RNA_helicase  52 vvvidDfgqvkdeenpsdlaelir 75 
                   v++ d++ +  de+n++ ++e+i 
    CTQ26817.1 158 VLLLDEITSALDESNKQNVNEIIH 181
                   556666666666655556666654 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     4e-05     0.022     100     160 ..       5      64 ..       2      78 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4e-05
       T2SSE 100 akeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderi 160
                 ++ l+ld +g++ ++++ i + ++  +r+    l++G+ g GK+tll ++ + +  ++ r+
  CTQ26817.1   5 NALLRLDGVGFK-TDDAVILHNISFQLRAGEFKLITGPSGCGKSTLLKIIASLLSPTSGRL 64 
                 555666666654.44556666677777888889***************9999988776665 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0034       1.9      25      41 ..     130     146 ..     116     182 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0034
     SbcCD_C  25 elsrssgtlSGGekqfl 41 
                  l++s+++lSGGekq +
  CTQ26817.1 130 MLEKSINELSGGEKQRV 146
                 47889999999999653 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00014     0.077      23      66 ..      34      72 ..      24      85 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00014
      AAA_15 23 eeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedle 66
                e + ++ G+ ++GKS++l+++  +l+ +    +  +++++ d+ 
  CTQ26817.1 34 E-FKLITGPSGCGKSTLLKIIASLLSPT----SGRLFFDDADVA 72
                4.78999******************988....555666665554 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00014     0.079      18      50 ..      25      57 ..       9      63 .. 0.91
   2 ?   -2.8   0.0       6.8   3.8e+03     121     137 ..     122     138 ..     121     144 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
      AAA_27 18 sldfsaeeadlhliyGpNEAGKstalrAisdll 50
                +++f+  + +++li Gp   GKst+l+ i +ll
  CTQ26817.1 25 NISFQLRAGEFKLITGPSGCGKSTLLKIIASLL 57
                677888899******************999987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.8
      AAA_27 121 alFgLdherLreGGeal 137
                 + FgLd++ L++  ++l
  CTQ26817.1 122 QRFGLDENMLEKSINEL 138
                 57999999998876665 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0098       5.5       1      16 [.      39      54 ..      39      63 .. 0.86
   2 ?    5.2   0.0     0.049        27      40      95 ..     143     199 ..     130     219 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0098
                EE-TTSSHHHHHHHHH CS
      AAA_17  1 lGgPGsGKgtqceklv 16
                +G+ G+GK+t+++ ++
  CTQ26817.1 39 TGPSGCGKSTLLKIIA 54
                69**********7665 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.049
                 HSSHHHHCTSHHHHHHHHHHHHHHHHHHHH.HSSEEEEEE-SEEEETTEEEESSHHH CS
      AAA_17  40 akardemrklpleekkelqkeaaekiaeea.kkkgvlvdghprikeqagfldglpke 95 
                 ++  + +r+l+  ++  l++e+  ++ e + ++ + ++ g+++ k+ a ++ + +++
  CTQ26817.1 143 KQRVSLIRNLQFLPRVLLLDEITSALDESNkQNVNEIIHGYATEKQVAVLWVTHDRN 199
                 455578889999999999*****9999986344567******998888877777764 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00021      0.12       4      21 ..      38      55 ..      36      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00021
      AAA_28  4 itGgestGKTtlleaLaa 21
                itG++++GK+tll+ +a+
  CTQ26817.1 38 ITGPSGCGKSTLLKIIAS 55
                9************99885 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.054        30      39      55 ..      37      53 ..      23      71 .. 0.85
   2 ?    6.4   0.0    0.0098       5.5     108     138 ..     142     174 ..     121     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.054
        TniB 39 llvGdsnnGKtmivekF 55
                l+ G+s +GK+++++  
  CTQ26817.1 37 LITGPSGCGKSTLLKII 53
                89**********99865 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0098
        TniB 108 eqqvlrllrelk..vrvLiiDEihnllagsark 138
                 e+q ++l+r+l+  +rvL++DEi ++l  s ++
  CTQ26817.1 142 EKQRVSLIRNLQflPRVLLLDEITSALDESNKQ 174
                 566778888777447**********99655443 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00051      0.28       3      23 ..      38      58 ..      37      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00051
                    EE-STTSSHHHHHHHHHHHHT CS
  Cytidylate_kin  3 iDGPagsGKssvaralaeklg 23
                    i GP+g GKs++ +++a+ l+
      CTQ26817.1 38 ITGPSGCGKSTLLKIIASLLS 58
                    77***************9775 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00063      0.35       2      21 ..      37      56 ..      36     102 .. 0.80
   2 ?   -2.4   0.0       5.7   3.2e+03      64      73 ..     157     166 ..     142     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00063
  Viral_helicase1  2 vvhGvpGcGKStlirkllrt 21
                     ++ G  GcGKStl++ +++ 
       CTQ26817.1 37 LITGPSGCGKSTLLKIIASL 56
                     688999*******9988876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.7
  Viral_helicase1  64 kililDEyll 73 
                      ++l+lDE+++
       CTQ26817.1 157 RVLLLDEITS 166
                      5789999986 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00068      0.38      34      57 ..      34      57 ..      16      86 .. 0.77
   2 ?   -2.4   0.0       6.4   3.6e+03      87      95 ..     158     166 ..     143     211 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00068
      RuvB_N 34 dhvllyGpPGlGkttlakiiakel 57
                +  l++Gp G Gk+tl kiia+ l
  CTQ26817.1 34 EFKLITGPSGCGKSTLLKIIASLL 57
                56799***************9865 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.4
      RuvB_N  87 vlfideihr 95 
                 vl++dei  
  CTQ26817.1 158 VLLLDEITS 166
                 666666643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 1610.63
//
Query:       CTQ26818.1  [L=260]
Description: putative permease of an ABC transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-82  276.5  18.0    1.9e-82  276.3  18.0    1.0  1  UPF0014   Uncharacterised protein family (UPF0014)
  ------ inclusion threshold ------
       0.11   12.6   0.6       0.11   12.6   0.6    2.3  3  Ac76      Orf76 (Ac76)
        2.3    8.4  10.4       0.72   10.1   6.1    1.9  2  EI24      Etoposide-induced protein 2.4 (EI24)


Domain annotation for each model (and alignments):
>> UPF0014  Uncharacterised protein family (UPF0014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.3  18.0   3.1e-86   1.9e-82       3     242 .]      10     245 ..       8     245 .. 0.99

  Alignments for each domain:
  == domain 1  score: 276.3 bits;  conditional E-value: 3.1e-86
     UPF0014   3 qlalalllvlialllslvlklglekelliaavrmvvQLllvGyvLklifalnslllvllillvmllvAaieaakrvkkklkklllivllsllvstlltl 101
                 +lal+++lvlia+l+s+++kl lek+++++++r++vQL++vGyvLk+if++n+ +l+ll++l+++++Aa++a+kr +k + k+++ +++++++++ ltl
  CTQ26818.1  10 SLALSMVLVLIAILVSYREKLALEKDIIWSICRAIVQLIIVGYVLKYIFNVNHAVLTLLMVLFICFNAAWNAKKR-SKYIDKAFISSFIAITTGAGLTL 107
                 799************************************************************************.999******************** PP

     UPF0014 102 llllllviqpepwyepqylIPlaGmilGnamnaialalerllselksereeiealLalGatpkeAvkeivreairaaliPtinsmatvGlVsLPGmmtG 200
                 ++l++   ++++++ p+++IP+aGm+ Gnam a++l+++++ ++++se+++i+++L+lGatpk A+++++re+ira+liPt++s++tvGlVsLPGmm+G
  CTQ26818.1 108 AVLVF---SGSIAFVPMQVIPIAGMVAGNAMVAVGLCYNNMGQRFSSEQQQIQEKLSLGATPKMASARLIRESIRASLIPTVDSAKTVGLVSLPGMMSG 203
                 *****...99***************************************************************************************** PP

     UPF0014 201 qiLaGaspleAvkyqilimfmilastalstvlvvlllyrrlf 242
                 +i+aG++p++A+kyqi+++fm+l++++lst+++ +l+yr++f
  CTQ26818.1 204 LIFAGIDPVKAIKYQIMVTFMLLSTASLSTIIAGYLTYRKFF 245
                 *****************************************9 PP

>> Ac76  Orf76 (Ac76)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.41   2.5e+03       8      16 ..      15      23 ..       5      31 .. 0.52
   2 ?   12.6   0.6   1.8e-05      0.11       3      41 ..      40      76 ..      38      90 .. 0.75
   3 ?   -3.2   0.1       1.4   8.5e+03      27      33 ..     220     226 ..     213     237 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.41
        Ac76  8 ialivlafi 16
                ++l+++a++
  CTQ26818.1 15 MVLVLIAIL 23
                222223322 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.8e-05
        Ac76  3 iilllialivlafildkneklsellltllllfvlFiill 41
                i+ +++ li+++++l    ++++ +ltll+  vlFi+  
  CTQ26818.1 40 ICRAIVQLIIVGYVLKYIFNVNHAVLTLLM--VLFICFN 76
                667899**************9999998764..5666643 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.4
        Ac76  27 lltllll 33 
                 ++t +ll
  CTQ26818.1 220 MVTFMLL 226
                 3333322 PP

>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   6.1   0.00012      0.72      23     128 ..      11     142 ..       7     162 .. 0.68
   2 ?    0.3   0.1      0.12   7.4e+02      12      57 ..     188     231 ..     173     250 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHHHHHH...........-.......TTHHHHHHHHHHHHH....HHHHHHHHHHHHHHH.HHHHHHHHHH.HHCCTTSHH.....HHHH CS
        EI24  23 lllnlllfllllvlll...........w.......vllasllvllllllp....lwlfplvalllaapf.ygllaekvekrhlglvksla.....eslk 93 
                 l+l+++l+l+++++ +           w        l+ + +vl +++ +    l l+ ++ + ++a +   + +++++k   ++++s        +l+
  CTQ26818.1  11 LALSMVLVLIAILVSYreklalekdiiWsicraivQLIIVGYVLKYIFNVnhavLTLLMVLFICFNAAWnAKKRSKYIDK---AFISSFIaittgAGLT 106
                 67777777755444448998888888877777655444445555555554766455555788888999988888888888...4555554455556777 PP

                 HHHHHHHHHHHHHHH.HHTTHHH....HHHHHHHHH CS
        EI24  94 slllllllllvllpl.liPvvglilsplllswltay 128
                  ++l++   + + p+ +iP+ g ++  ++ ++  +y
  CTQ26818.1 107 LAVLVFSGSIAFVPMqVIPIAGMVAGNAMVAVGLCY 142
                 777777777777777888999999988888877666 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.12
                 .TTTHHHHHHHHHHHHHHHHHHHHHHH-...TTHHHHHHHHHHHHHHHH CS
        EI24  12 spkllallllplllnlllfllllvlllw...vllasllvllllllplwl 57 
                 s+k   l+ lp  +++l+f+++         ++   + v  +ll  + l
  CTQ26818.1 188 SAKTVGLVSLPGMMSGLIFAGI-----DpvkAIKYQIMVTFMLLSTASL 231
                 4666677777888888887743.....0222122222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1242  (0.0692732); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 1881.59
//
Query:       CTQ26819.1  [L=284]
Description: putative thioredoxin domain-containing protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-29   99.9   5.6    7.3e-29   99.9   5.6    3.0  3  TPR_20         Tetratricopeptide repeat
      1e-20   73.6   0.0    2.1e-20   72.6   0.0    1.5  1  Thioredoxin    Thioredoxin
    7.3e-17   61.7   2.2    7.3e-17   61.7   2.2    3.8  3  TPR_19         Tetratricopeptide repeat
    4.6e-08   33.2   2.8    1.9e-06   28.0   0.5    2.5  2  ANAPC3         Anaphase-promoting complex, cyclosome, subunit
    7.4e-08   32.5   0.1    7.4e-08   32.5   0.1    1.8  2  TraF           F plasmid transfer operon protein
    2.7e-05   24.4   0.0     0.0011   19.2   0.0    2.5  2  Thioredoxin_8  Thioredoxin-like
    0.00015   21.3   0.0     0.0002   20.8   0.0    1.2  1  OST3_OST6      OST3 / OST6 family, transporter family
    0.00027   21.4   0.0    0.00075   19.9   0.0    1.8  1  Thioredoxin_2  Thioredoxin-like domain
     0.0023   17.9   0.0     0.0035   17.3   0.0    1.4  1  Thioredoxin_6  Thioredoxin-like domain
     0.0025   18.3   8.6       0.05   14.0   1.4    2.6  2  BTAD           Bacterial transcriptional activator domain
     0.0078   16.2   0.2      0.021   14.8   0.2    1.7  1  SRP_TPR_like   Putative TPR-like repeat
     0.0085   16.3   3.1       0.24   11.6   0.7    3.2  3  TetR_C_31      Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.031   14.2   0.0    1.6  1  HyaE           Hydrogenase-1 expression protein HyaE
      0.046   13.8   0.0       0.12   12.4   0.0    1.8  1  Thioredoxin_3  Thioredoxin domain
      0.077   13.3  10.4        2.5    8.5   1.4    3.8  3  TPR_12         Tetratricopeptide repeat
      0.085   13.3   0.3        2.4    8.7   0.1    2.8  2  TPR_17         Tetratricopeptide repeat
       0.12   13.2  19.0         12    7.0   2.1    6.1  6  TPR_14         Tetratricopeptide repeat
        0.2   10.6   3.0       0.49    9.3   2.9    1.5  1  ChAPs          ChAPs (Chs5p-Arf1p-binding proteins)
       0.25   11.6   8.8        0.2   11.9   0.9    2.8  2  TPR_5          Tetratrico peptide repeat
       0.42   10.8   5.4        5.2    7.4   0.6    4.0  3  TPR_2          Tetratricopeptide repeat
        2.6    8.7  11.7        6.6    7.5   0.8    4.5  4  TPR_16         Tetratricopeptide repeat
        3.9    7.5   5.4         12    5.9   0.4    3.4  3  TPR_1          Tetratricopeptide repeat
        5.4    7.0   9.1         17    5.4   0.1    3.7  4  TPR_10         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   2.2     0.031        24      19      47 ..     111     139 ..      95     149 .. 0.82
   2 ?   -0.9   0.1       2.7   2.1e+03      16      48 ..     142     174 ..     136     184 .. 0.73
   3 !   99.9   5.6   9.4e-32   7.3e-29       1      90 []     195     284 .]     195     284 .] 0.99

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.031
      TPR_20  19 pddldarldlAlallaagryeeAleqLle 47 
                 p + +++ + Alal+++++y++Al +L e
  CTQ26819.1 111 PREEELKAQQALALMQEEKYADALPLLKE 139
                 7778899999**************99876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.7
      TPR_20  16 aanpddldarldlAlallaagryeeAleqLlei 48 
                 + + ++ ++ l lA+ l+a  r +eA + L +i
  CTQ26819.1 142 QLSNQESQIGLLLAETLIALHRSDEAESVLKTI 174
                 555667788889999999999999997666555 PP

  == domain 3  score: 99.9 bits;  conditional E-value: 9.4e-32
      TPR_20   1 qaadapelaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealgsqdplvakyRrkLsslLf 90 
                 qaad+pe+++l++++++np+d +++ +lAl+l++ gr+eeAl++L++ l++d+++ d++ark l +i++alg++d+l+akyRr+L+slL+
  CTQ26819.1 195 QAADTPEIQQLQQQVEQNPEDAQLASQLALQLHQVGRNEEALALLFSHLQKDLGAGDGQARKMLQEILAALGTGDALAAKYRRQLYSLLY 284
                 79***************************************************************************************9 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   2.7e-23   2.1e-20       2     102 ..       6     107 ..       5     108 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 2.7e-23
                  EEESSHHHHHHHHTT.TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHH CS
  Thioredoxin   2 vlvltkenFeeevak.ekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekekla 98 
                  +++++++n ++++++  + +vl  F++    hC +l+P+le+la +++++++lakvd+d+++ la++++ ++iPt++lf+ng+ v+ +eg +++e+++
   CTQ26819.1   6 IVNISEANLQQTLQQsMNVPVLFYFWSARSQHCEQLTPVLERLAAQYNGQFTLAKVDCDAEQMLASQFGLRAIPTVYLFQNGQPVDGFEGPQPEEAIR 103
                  57789999*****9967889*****************************************************************************9 PP

                  HHHH CS
  Thioredoxin  99 aflk 102
                  a l+
   CTQ26819.1 104 ALLD 107
                  9887 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   2.2   9.3e-20   7.3e-17       1      68 []     124     190 ..     124     190 .. 0.99
   2 !    7.2   3.8    0.0091       7.1      11      48 ..     202     239 ..     192     249 .. 0.84
   3 ?    0.6   0.1       1.1   8.2e+02      43      57 ..     253     267 ..     250     280 .. 0.65

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 9.3e-20
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAkl 68 
                 l++e++ya+Al+ll++a+q +++ + + llLAe l+al + deAe +L+++p++d+d   y++L A++
  CTQ26819.1 124 LMQEEKYADALPLLKEAWQLSNQESQIGLLLAETLIALHRSDEAESVLKTIPLQDQD-THYQGLVAQI 190
                 799******************************************************.********97 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0091
      TPR_19  11 lalleqalqedpknaearllLAeallalgqldeAealL 48 
                 ++ l+q  +++p++a ++ +LA  l + g+ +eA alL
  CTQ26819.1 202 IQQLQQQVEQNPEDAQLASQLALQLHQVGRNEEALALL 239
                 56677778****************************99 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 1.1
      TPR_19  43 eAealLdalpeedpd 57 
                 +A+++L++++++   
  CTQ26819.1 253 QARKMLQEILAALGT 267
                 677777777766544 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.5   2.5e-09   1.9e-06      20      80 ..     111     172 ..      99     174 .. 0.86
   2 ?    5.0   0.1     0.038        29      45      80 ..     204     240 ..     193     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.5e-09
                 H--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  20 tespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 ++ +e     Al+l + ++y  A+ ll++a +l ++  ++ +l+A++l++L++ +eA+++L+
  CTQ26819.1 111 PREEELKAQQALALMQEEKYADALPLLKEAwQLSNQESQIGLLLAETLIALHRSDEAESVLK 172
                 5555555567********************99999999**********************97 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.038
                 HHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  45 llrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                  l++  ++n+++ + +  +A  l + ++ eeA+a+L+
  CTQ26819.1 204 QLQQQvEQNPEDAQLASQLALQLHQVGRNEEALALLF 240
                 56666577777777777777777777999***99997 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   9.5e-11   7.4e-08     114     202 ..       8      87 ..       2      91 .. 0.91
   2 ?   -2.1   0.1       3.5   2.8e+03      39      56 ..     199     216 ..     186     231 .. 0.55

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 9.5e-11
        TraF 114 darkeekeaalkklakeygLlfFyrgkcpyceaqapilqafadky..glevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpk 202
                 + ++++ +++l++  +   L++F +++++ ce++ p+l+++a +y  ++++  V++d +++  l++         ++g++ +P+++l++  
  CTQ26819.1   8 NISEANLQQTLQQSMNVPVLFYFWSARSQHCEQLTPVLERLAAQYngQFTLAKVDCDAEQM--LAS---------QFGLRAIPTVYLFQNG 87 
                 567788899************************************8779999999999999..999.........************9976 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.5
        TraF  39 tesaaelrkeleelldkA 56 
                 t ++++l++++e+  ++A
  CTQ26819.1 199 TPEIQQLQQQVEQNPEDA 216
                 333344444443333333 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.5e-06    0.0011       3      46 ..      25      66 ..      23      68 .. 0.92
   2 ?    3.9   0.0     0.088        69      71      91 ..      66      86 ..      60      90 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.5e-06
                   EEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS- CS
  Thioredoxin_8  3 vvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkk 46
                    vl+yf++  +++c++ tp l +l  +++   ++ +  v +d +
     CTQ26819.1 25 PVLFYFWSARSQHCEQLTPVLERLAAQYN--GQFTLAKVDCDAE 66
                   69**************************9..9999999999975 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.088
                   HHHHTT-S--TT-SEEEEE-T CS
  Thioredoxin_8 71 rnklkkkynvkaiPtlvvldk 91
                    + l++++++ aiPt+++ ++
     CTQ26819.1 66 EQMLASQFGLRAIPTVYLFQN 86
                   67899***********99875 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.6e-07    0.0002      11     108 ..       4      89 ..       1     123 [. 0.84

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.6e-07
   OST3_OST6  11 ngviklndenykellkgprdysvvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgp 108
                 +++++++++n+++ l+++ +  v+ ++ +  +    + C+++ p +e +a +++ +          akvd d  + + +++gl+ +P ++lf+  ++p
  CTQ26819.1   4 QNIVNISEANLQQTLQQSMNVPVLFYFWSARS----QHCEQLTPVLERLAAQYNGQ-------FTLAKVDCDAEQMLASQFGLRAIPTVYLFQN-GQP 89 
                 47999**********98888888888877755....56**************9999.......79***************************98.333 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   9.7e-07   0.00075       5     109 .]      23     106 ..      19     106 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 9.7e-07
  Thioredoxin_2   5 gkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgkeivarlpGy 99 
                    + pvl++f++  +  C++l  +l+ l            + + ++  ++++c++e+            la ++g+r+ Pt+  f +g+ +v+  +G 
     CTQ26819.1  23 NVPVLFYFWSARSQHCEQLTPVLERL--A--------AQYNGQFTLAKVDCDAEQM-----------LASQFGLRAIPTVYlFQNGQ-PVDGFEGP 96 
                    669***********************..2........233566***********97...........************77477777.******** PP

  Thioredoxin_2 100 vpaeeleall 109
                     p+e ++all
     CTQ26819.1  97 QPEEAIRALL 106
                    ****999987 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.5e-06    0.0035      88     159 ..      16      85 ..       2     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.5e-06
                    HHHHTSS--EEEEEEE-TTSTTHHHHHHHHHHHHHHTTTT-EEEEEETTGGHHHHHHTT--GGG-SEEEEEE CS
  Thioredoxin_6  88 eelfeeglppllllflkkddeeteklkkaiekvakefkdkinfaladaksfkrpleylglsssdlPvivivd 159
                    ++l+++   p+l++f   +++  e+l  ++e++a++++++++ a +d+++ + + +++gl+  ++P++ +++
     CTQ26819.1  16 QTLQQSMNVPVLFYFWSARSQHCEQLTPVLERLAAQYNGQFTLAKVDCDAEQMLASQFGLR--AIPTVYLFQ 85 
                    344555555688888888888889*************************9999999*****..999998777 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   1.0    0.0045       3.5      91     129 ..     109     147 ..      95     173 .. 0.81
   2 !   14.0   1.4   6.5e-05      0.05      82     141 ..     202     258 ..     175     263 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0045
                 HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH CS
        BTAD  91 ehPlrErlhrqlmrAlarsGrqaeALevYerlrrlLaee 129
                   P  E+l +q  +Al++ ++ a+AL   +++++l ++e
  CTQ26819.1 109 VLPREEELKAQQALALMQEEKYADALPLLKEAWQLSNQE 147
                 4799*****************************999887 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 6.5e-05
                 HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH CS
        BTAD  82 laelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrrlLaeeLgvepgpelral 141
                 +++l+++v+++P + +l  ql + l+++Gr++eAL+    l ++L+++Lg   g++ + l
  CTQ26819.1 202 IQQLQQQVEQNPEDAQLASQLALQLHQVGRNEEALAL---LFSHLQKDLGAGDGQARKML 258
                 789********************************85...66778888887766665544 PP

>> SRP_TPR_like  Putative TPR-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   2.7e-05     0.021      14      85 ..     114     191 ..     106     220 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.7e-05
  SRP_TPR_like  14 kelkkfkvvaliklekyeeaLkllkkgsalse...dvrfEkaYvlYklkkykkalkilkkveaee...kvkvlksqvl 85 
                   +elk  +++al++ eky++aL llk++ +ls+   ++    a  l  l++  +a ++lk +  ++   + + l +q+ 
    CTQ26819.1 114 EELKAQQALALMQEEKYADALPLLKEAWQLSNqesQIGLLLAETLIALHRSDEAESVLKTIPLQDqdtHYQGLVAQIE 191
                   6788899******************99877651114566778888888888888888887644332146777888875 PP

>> TetR_C_31  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.28   2.2e+02      73     106 ..      80     111 ..      36     112 .. 0.76
   2 !   11.6   0.7    0.0003      0.24      17      75 ..     179     240 ..     162     265 .. 0.71
   3 ?    1.4   0.1      0.47   3.7e+02      40      67 ..     243     270 ..     241     283 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHHHSGTS-HHHHHHHHHHHHT- CS
   TetR_C_31  73 llvaaldGllldrLagpaadpraevrellralld 106
                 +++++ +G  +d   gp  +p++++r+ll+++l+
  CTQ26819.1  80 TVYLFQNGQPVDGFEGP--QPEEAIRALLDKVLP 111
                 55555566666666666..889999999999997 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0003
                 CCTTHHHHHHHHHHHHHHCCSCHHHHHHHHHH.....HHHHHHHHHHHHHHCSS-HHHHHHHHH CS
   TetR_C_31  17 aladrertlAryelfleaarrPeLraalarlr.....ralrealaallaalGlpdpeeaarllv 75 
                   ++ ++++A++el+ +aa  Pe+++++++       ++l+ +la  l ++G+   eea +ll+
  CTQ26819.1 179 QDTHYQGLVAQIELLKQAADTPEIQQLQQQVEqnpedAQLASQLALQLHQVGR--NEEALALLF 240
                 4558999*******************999887554444444444444444444..333444444 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHHHHHHHHHHHHHCSS-H CS
   TetR_C_31  40 LraalarlrralrealaallaalGlpdp 67 
                 L+  l ++  + r  l+++laalG  d+
  CTQ26819.1 243 LQKDLGAGDGQARKMLQEILAALGTGDA 270
                 6667777788899999999999999644 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     4e-05     0.031      11      98 ..       6      92 ..       1      98 [. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4e-05
                EEEE-CCCHHHHHHHHSEEEEEESS-SS-SSSSS-HCHHHHHHHCT-TTS-EEEEEETHHHHHHHHHCCT-TSSSEEEEEETTEEEEE CS
        HyaE 11 laevdadtlddflkaagdavlllagDpkrfpEvsDvaVvlpEllkaFpnalraavvadreqeealaerfgvlktPsllflrdgeylgv 98
                + ++++++l++ l+++    +l+    +r   +   + vl  l ++++ +++ a v   + e++la++fg++  P++ ++++g+ +  
  CTQ26819.1  6 IVNISEANLQQTLQQSMNVPVLFYFWSARSQHCEQLTPVLERLAAQYNGQFTLAKVD-CDAEQMLASQFGLRAIPTVYLFQNGQPVDG 92
                5667889999999998888888888999999999999************99999987.99*********************9987655 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00016      0.12      11      63 ..      36      95 ..      22     107 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00016
                   TTCHHHHHHHHHHCHCCTCECEEECC.TTHHHH..HHCT-SSSSEE..ECTTCEE..EES CS
  Thioredoxin_3 11 akCpklekavkeaaaekgikaevekv.tdfeei..ekygVmsvPal..vidgkvv..vsG 63
                   ++C++l+ +++++aa+ + ++++ kv  d e++  +++g +++P++  + +g+ v  ++G
     CTQ26819.1 36 QHCEQLTPVLERLAAQYNGQFTLAKVdCDAEQMlaSQFGLRAIPTVylFQNGQPVdgFEG 95
                   79************************9899999899*********954446766544566 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.4    0.0032       2.5       9      67 ..     120     170 ..     113     174 .. 0.72
   2 ?    7.8   0.3     0.005       3.9      32      68 ..     205     239 ..     201     242 .. 0.67
   3 ?   -1.7   0.1       4.7   3.7e+03      63      73 ..     253     263 ..     252     277 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0032
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlel 67 
                  a++l++ ++y++Al ll++a ++       +   ++++   L++++ al r +eA++ 
  CTQ26819.1 120 QALALMQEEKYADALPLLKEAWQLS------NQ--ESQIGLLLAETLIALHRSDEAESV 170
                 7999*****************4444......33..555566666666666677776665 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.005
      TPR_12  32 iarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 +++++  +++p+ a+    L+  +++ gr eeAl+ll
  CTQ26819.1 205 LQQQV--EQNPEDAQLASQLALQLHQVGRNEEALALL 239
                 55666..667777777777777777777777777664 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 4.7
      TPR_12  63 eAlelleeala 73 
                 +A+++l+e la
  CTQ26819.1 253 QARKMLQEILA 263
                 34455555444 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.72   5.6e+02      18      33 ..     153     168 ..     152     169 .. 0.91
   2 ?    8.7   0.1     0.003       2.4       7      33 ..     210     236 ..     209     237 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.72
      TPR_17  18 nLAelllknGdlmtAr 33 
                 +LAe+l  ++++++A+
  CTQ26819.1 153 LLAETLIALHRSDEAE 168
                 69************97 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.003
      TPR_17   7 eldPnnadaynnLAelllknGdlmtAr 33 
                 e++P +a +  +LA  l++ G+ ++A+
  CTQ26819.1 210 EQNPEDAQLASQLALQLHQVGRNEEAL 236
                 89**********************997 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0         2   1.5e+03      15      25 ..      96     106 ..      93     112 .. 0.80
   2 ?    7.0   2.1     0.015        12       2      42 ..     115     155 ..     114     157 .. 0.84
   3 ?    5.8   0.0     0.038        30       5      27 ..     152     174 ..     149     194 .. 0.84
   4 ?    4.3   0.5      0.12        90      21      42 ..     202     223 ..     185     226 .. 0.81
   5 ?    3.5   1.0       0.2   1.6e+02       4      30 ..     219     245 ..     216     258 .. 0.75
   6 ?    3.2   1.3      0.26   2.1e+02      12      37 ..     245     272 ..     233     279 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 2
      TPR_14  15 GdpdeAiallr 25 
                  +p+eAi++l 
  CTQ26819.1  96 PQPEEAIRALL 106
                 69999999874 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.015
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 e+ ++ a al++ +++++A+ ll++a +l  ++ ++ llla
  CTQ26819.1 115 ELKAQQALALMQEEKYADALPLLKEAWQLSNQESQIGLLLA 155
                 5678899*******************988887777777776 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.038
      TPR_14   5 lalaeallalGdpdeAiallrra 27 
                 l+lae l al + deA+ +l+ +
  CTQ26819.1 152 LLLAETLIALHRSDEAESVLKTI 174
                 689***************99876 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.12
      TPR_14  21 iallrralalaPddaeawllla 42 
                 i+ l++ ++++P+da++  +la
  CTQ26819.1 202 IQQLQQQVEQNPEDAQLASQLA 223
                 688***********99887766 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.2
      TPR_14   4 llalaeallalGdpdeAiallrralal 30 
                   +la  l + G+ +eA+all   l++
  CTQ26819.1 219 ASQLALQLHQVGRNEEALALLFSHLQK 245
                 568999999**********99666665 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.26
      TPR_14  12 lalGdpd.eAiallrralal.aPddaea 37 
                   lG  d +A+++l+++la+ + +da a
  CTQ26819.1 245 KDLGAGDgQARKMLQEILAAlGTGDALA 272
                 55666653699*****999624455544 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.9   0.00063      0.49     231     308 ..     111     188 ..      98     228 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00063
                 S-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHT----SS--------S CS
       ChAPs 231 ekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkvYikledienALltLNscPmftykekdvlrri 308
                 +++ el   qa  l++++k+  Al + k+a +++  e++   lL+++ i+l+  ++A   L ++P++    +++   +
  CTQ26819.1 111 PREEELKAQQALALMQEEKYADALPLLKEAWQLSNQESQIGLLLAETLIALHRSDEAESVLKTIPLQDQDTHYQGLVA 188
                 5667888899999*****************************************************999888875433 PP

>> TPR_5  Tetratrico peptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2      0.15   1.2e+02      20      75 ..     133     185 ..     128     201 .. 0.63
   2 ?   11.9   0.9   0.00026       0.2      36      67 ..     214     245 ..     194     276 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.15
       TPR_5  20 avplYrraLaeGLagarrrratiqLassLRnlGeaeealaLLraeleapsdeldda 75 
                 a pl ++a +      +  ++ + La +L  l + +ea+ +L++   + +d   + 
  CTQ26819.1 133 ALPLLKEAWQL---SNQESQIGLLLAETLIALHRSDEAESVLKTIPLQDQDTHYQG 185
                 44555555442...345667778888888888888888888887655555544443 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00026
       TPR_5  36 rrrratiqLassLRnlGeaeealaLLraelea 67 
                    ++  qLa  L ++G+ eealaLL + l++
  CTQ26819.1 214 EDAQLASQLALQLHQVGRNEEALALLFSHLQK 245
                 33455556666666666666666666555444 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.6    0.0066       5.2       6      27 ..     119     140 ..     115     146 .. 0.89
   2 ?    0.1   0.0       1.5   1.2e+03       7      23 ..     154     170 ..     152     173 .. 0.84
   3 ?    2.1   0.2      0.33   2.6e+02       4      23 ..     219     238 ..     216     239 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0066
       TPR_2   6 nlGlayyklgdyeeAleafekA 27 
                 +++la+++  +y++Al ++++A
  CTQ26819.1 119 QQALALMQEEKYADALPLLKEA 140
                 689****************998 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.5
       TPR_2   7 lGlayyklgdyeeAlea 23 
                 l++ +++l + +eA+  
  CTQ26819.1 154 LAETLIALHRSDEAESV 170
                 8999**********876 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.33
       TPR_2   4 lynlGlayyklgdyeeAlea 23 
                   +l+l + + g+ eeAl++
  CTQ26819.1 219 ASQLALQLHQVGRNEEALAL 238
                 5689999**********986 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       4.9   3.8e+03      49      61 ..      97     110 ..      93     113 .. 0.71
   2 ?    7.5   0.8    0.0085       6.6       2      23 ..     119     140 ..     118     171 .. 0.83
   3 ?    4.5   0.3     0.072        56      20      57 ..     205     239 ..     202     251 .. 0.83
   4 ?   -0.6   0.2       2.9   2.2e+03      15      34 ..     253     271 ..     252     278 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4.9
      TPR_16  49 rlaeAa.alyraal 61 
                   +eA+ al+++ l
  CTQ26819.1  97 QPEEAIrALLDKVL 110
                 67888888888766 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0085
      TPR_16   2 alaraalragdyddAaaaleaa 23 
                 ++a+a+++  +y+dA+++l++a
  CTQ26819.1 119 QQALALMQEEKYADALPLLKEA 140
                 699***************9877 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.072
      TPR_16  20 leaalkrdpssPdaaeAllllgdaalrqgrlaeAaaly 57 
                 l++ ++++   P++a+ +  l++ + + gr +eA+al+
  CTQ26819.1 205 LQQQVEQN---PEDAQLASQLALQLHQVGRNEEALALL 239
                 56667888...************************765 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 2.9
      TPR_16  15 dAaaaleaalkrdpssPdaa 34 
                 +A+++l++ l++ + + da 
  CTQ26819.1 253 QARKMLQEILAALG-TGDAL 271
                 67777766666552.22233 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       3.3   2.5e+03      10      24 ..      49      63 ..      48      64 .. 0.82
   2 ?    5.9   0.4     0.015        12       7      27 ..     120     140 ..     117     143 .. 0.91
   3 ?    1.8   0.1       0.3   2.4e+02       6      23 ..     221     238 ..     216     246 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.3
                HHHHTT-HHHHHHHH CS
       TPR_1 10 ayfklgkydeAleyy 24
                a +++g++  A  ++
  CTQ26819.1 49 AAQYNGQFTLAKVDC 63
                66789***9999998 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.015
                 HHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekA 27 
                  ++a+++ +ky +Al   ++A
  CTQ26819.1 120 QALALMQEEKYADALPLLKEA 140
                 589************999998 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.3
                 HHHHHHHHTT-HHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAley 23 
                 +l++ +++ g+ +eAl+ 
  CTQ26819.1 221 QLALQLHQVGRNEEALAL 238
                 7899999********975 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.022        17       9      31 ..     121     143 ..     121     147 .. 0.88
   2 ?   -2.2   0.0       5.5   4.3e+03       8      23 ..     154     169 ..     154     172 .. 0.80
   3 ?    5.2   0.6     0.027        21       6      25 ..     220     239 ..     216     239 .. 0.84
   4 ?   -2.3   0.1       5.8   4.5e+03      20      30 ..     253     263 ..     252     264 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.022
      TPR_10   9 analrqrgrydeAealleealai 31 
                 a al q  +y++A+ ll+ea ++
  CTQ26819.1 121 ALALMQEEKYADALPLLKEAWQL 143
                 67899999************997 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.5
      TPR_10   8 LanalrqrgrydeAea 23 
                 La +l ++ r deAe 
  CTQ26819.1 154 LAETLIALHRSDEAES 169
                 7888888889999985 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.027
      TPR_10   6 nNLanalrqrgrydeAeall 25 
                 + La  l+q+gr +eA+all
  CTQ26819.1 220 SQLALQLHQVGRNEEALALL 239
                 6788889**********996 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 5.8
      TPR_10  20 eAealleeala 30 
                 +A+++l+e la
  CTQ26819.1 253 QARKMLQEILA 263
                 69999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       999  (0.0557198); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1972.32
//
Query:       CTQ26820.1  [L=269]
Description: putative oxidoreductase with NAD(P)-binding Rossmann-fold domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-42  145.4   0.0    1.6e-42  145.2   0.0    1.1  1  adh_short        short chain dehydrogenase
    3.3e-30  105.4   0.0    4.2e-30  105.0   0.0    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.4e-13   51.2   0.0    1.9e-13   50.7   0.0    1.2  1  KR               KR domain
    3.7e-06   26.5   0.0    2.8e-05   23.6   0.0    1.9  1  DUF1776          Fungal family of unknown function (DUF1776)
    3.9e-06   26.9   0.0    9.8e-06   25.6   0.0    1.6  1  NAD_binding_10   NAD(P)H-binding
     0.0027   17.4   0.0     0.0066   16.2   0.0    1.6  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 
  ------ inclusion threshold ------
       0.15   11.9   0.0       0.32   10.8   0.0    1.5  1  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
       0.18   11.3   0.0        0.8    9.1   0.0    1.9  2  Epimerase        NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   0.0   7.3e-46   1.6e-42       1     194 [.      16     204 ..      16     205 .. 0.96

  Alignments for each domain:
  == domain 1  score: 145.2 bits;  conditional E-value: 7.3e-46
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGitgsgpfselse 98 
                 k+vlvtG+ssGIG++ a  l ++G++v+++ r++e++ + ++ l+     ++ i +D+ d ++ve++ +++++ +  +l  L nNAG    gp + +s 
  CTQ26820.1  16 KTVLVTGCSSGIGLESALDLTRQGFRVLAACRKAEDV-ARMQDLG-----LTGILLDLDDPQSVERAAAEVIALTdNRLYGLFNNAGYGVYGPLNTISR 108
                 79***************************88998888.4556666.....89***********************99********************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTHH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelreke 194
                 +++e+ ++ N++g+ +lt ++lpam  + +GrIv +sSv g+ +++g  aY+AsK a+++++++l++el+ +gi+v+ + PG+++T ++ ++++++
  CTQ26820.1 109 QQMEQQFSANFFGAHQLTMLLLPAMTPHGEGRIVMTSSVMGLIASPGRGAYAASKYALEAWSDALRMELRHSGIQVSLIEPGPIRTRFTDNVNQTQ 204
                 ******************************************************************************************999876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.0   1.9e-33   4.2e-30       1     187 [.      22     205 ..      22     234 .. 0.92

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 1.9e-33
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekf.gklDilvnnagiapklkgpfletsreefd 96 
                   G  sgIG + A  l ++G +v+++ ++ e+   v+++++ lg + + +D  d+++ve++++ev + + ++l +l+nnag+     gp+ ++sr++++
    CTQ26820.1  22 GCSSGIGLESALDLTRQGFRVLAACRKAED---VARMQD-LGLTGILLDLDDPQSVERAAAEVIALTdNRLYGLFNNAGYGVY--GPLNTISRQQME 112
                   6789*********************99998...888876.89999********************9999**************..************ PP

                   HHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfde 187
                   + ++ n+ ++++l+  +lp+m+++  g+iv +ssv + ++ p+  ay+a+K alea + +l +el + gi+v  + pgpi+T+ +++++++++
    CTQ26820.1 113 QQFSANFFGAHQLTMLLLPAMTPHgeGRIVMTSSVMGLIASPGRGAYAASKYALEAWSDALRMELRHSGIQVSLIEPGPIRTRFTDNVNQTQS 205
                   *******************8887669************************************************************9986543 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   8.6e-17   1.9e-13       2     165 ..      17     175 ..      16     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 8.6e-17
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS.S---EEEE---------TTT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee.ppikGvihaAgvlrdkllee 99 
                 t+l+tG+  g+Gle a  l ++g r l+ + +         + +a++++lg +   + +D+ d+++ve++ +e+ a + +++ G ++ Ag    ++l++
  CTQ26820.1  17 TVLVTGCSSGIGLESALDLTRQGFRVLAACRKA--------EDVARMQDLGLTG--ILLDLDDPQSVERAAAEVIALTdNRLYGLFNNAGYGVYGPLNT 105
                 78**********************999877544........5677888888765..556666***********999888******************** PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH CS
          KR 100 mtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs 165
                  + +++eq +++ + Ga++L  ll +    +    +v++SS+ gl+ s+g+++Yaa    l+a+ +  r 
  CTQ26820.1 106 ISRQQMEQQFSANFFGAHQLTMLLLPamtpHGEGRIVMTSSVMGLIASPGRGAYAASKYALEAWSDALRM 175
                 *********************998885544555689********************98766665544332 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.3e-08   2.8e-05      21     201 ..      32     193 ..      16     215 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.3e-08
     DUF1776  21 alDLerrGFiVfvtvesaeeeklvesedredIrplsvdddpssieasleefaqslesphvalpgakphvlrLkgvilvPslsy.ptgpietiplsswas 118
                 alDL r+GF V    ++ae+ + +++   + I  l +dd p+s+e +  e      +             rL g+    +  y  +gp++ti+ +++++
  CTQ26820.1  32 ALDLTRQGFRVLAACRKAEDVARMQDLGLTGI-LLDLDD-PQSVERAAAEVIALTDN-------------RLYGL--FNNAGYgVYGPLNTISRQQMEQ 113
                 88999999999999999999999999887766.466665.88888888888877775.............78884..5677888*************** PP

     DUF1776 119 elnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnld 201
                 ++  +++   +++  llp +t    +    iv++ s++  +  p  +  a    al+a   +L+ elr+ +i+v+ i  G + 
  CTQ26820.1 114 QFSANFFGAHQLTMLLLPAMTP---HGEGRIVMTSSVMGLIASPGRGAYAASKYALEAWSDALRMELRHSGIQVSLIEPGPIR 193
                 *********************8...6677788999****************************************99988775 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   4.4e-09   9.8e-06       4     167 ..      25     213 ..      22     217 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4.4e-09
                     SHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-.............--TCC.....HHHH... CS
  NAD_binding_10   4 GkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsal.............ggggk.....deeg... 77 
                      ++G + +  l ++ g++v a  R++e++a+++ + gl+ + +d+ d++++++a + + a   +              g         +  +   
      CTQ26820.1  25 SGIGLESALDLTRQ-GFRVLAACRKAEDVARMQ-DLGLTGILLDLDDPQSVERAAAEVIALTDNRlyglfnnagygvyG---PlntisR--Qqme 112
                     57888888889999.5**************996.79******************9987766555567777755555441...0334431..1335 PP

                     .............HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHH.HHHHHHHHHHSSSEEEEEEE-CEE-ST--SEEEEE CS
  NAD_binding_10  78 .............aknivdaakeagvkRfvlvsaigvgdevpgefgewnkellkaylaa.kraaeellrasgldwTivrpggLtdepttkyrvve 158
                                  +  ++ a+  +g  R+v+ s++     +pg   + ++ + k++l+a   a   +lr+sg++   + pg +    t +++ ++
      CTQ26820.1 113 qqfsanffgahqlTMLLLPAMTPHGEGRIVMTSSVMGLIASPG---RGAYAASKYALEAwSDALRMELRHSGIQVSLIEPGPIRTRFTDNVNQTQ 204
                     55788888888889999****************9655544444...444455567775515566667**************99999888899999 PP

                     TTSS----E CS
  NAD_binding_10 159 kgepfkggs 167
                     +++p+++  
      CTQ26820.1 205 SDKPVENPG 213
                     888887765 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     3e-06    0.0066      39      62 ..      14      37 ..       3      44 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3e-06
                     .-SEEEEESTSSHHHHHHHHHHHH CS
  Eno-Rase_NADH_b 39 gpkkvLviGaStGYGLAsriaaaf 62
                       k+vLv G+S+G GL s + +++
       CTQ26820.1 14 MQKTVLVTGCSSGIGLESALDLTR 37
                     479*************99887765 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00014      0.32       8      43 ..      26      60 ..      25      61 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00014
  DNA_pol_lambd_f  8 GVGpktAkkwyakGirtledlrakrakLtreqqiGl 43
                     G+G + A ++ ++G+r l   r+  +++ r+q++Gl
       CTQ26820.1 26 GIGLESALDLTRQGFRVLAACRK-AEDVARMQDLGL 60
                     9**********************.79********98 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00036       0.8       1      62 [.      18      79 ..      18      84 .. 0.91
   2 ?   -0.5   0.0      0.32   7.1e+02     139     157 ..     156     174 ..     124     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00036
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfke 62
                +lVtG +  iG   +  l ++g +v++  r+ ++ ++ ++  l+ + ldl d++++er+ +e
  CTQ26820.1 18 VLVTGCSSGIGLESALDLTRQGFRVLAACRKAEDVARMQDLGLTGILLDLDDPQSVERAAAE 79
                79*****************************887777777777***************9886 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.32
                 SSHHHHHHHHHHHHHHHHH CS
   Epimerase 139 nspYaaaKlageklveaya 157
                 + +Yaa+K+a e    a++
  CTQ26820.1 156 RGAYAASKYALEAWSDALR 174
                 6789999999998777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1915.42
//
Query:       CTQ26821.1  [L=197]
Description: multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-25   91.0   0.0    1.5e-25   90.6   0.0    1.1  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
    1.4e-13   51.3   0.0    1.6e-13   51.1   0.0    1.0  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase
  ------ inclusion threshold ------
      0.041   13.1   0.0      0.057   12.7   0.0    1.1  1  OSK            OSK domain


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   2.6e-29   1.5e-25       2     175 ..      22     176 ..      21     178 .. 0.89

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 2.6e-29
                    EESHHHHTCTTBCCHCHHCCCCCCCHHHTT-EEEEE.EEHCCH-H..HHHHHHHH.CTGGG-TSEEEEE--CCCCCTT--HHHHHHH..HHHHHHH CS
  Lipase_GDSL_2   2 lGDSiTaGygadgggrsypaylarllaarlgldvvnnlgvsGattallrllerlr.dllrlkpdlvtiliGtNDlgrgvpaaaaaandnleelida 96 
                    lGDS++aGy   +++ ++pa+l ++++a++  +vvn +++sG+t+  ++ l rl+  l +++p++v++ +G+ND +rg p++++++   l+++i++
     CTQ26821.1  22 LGDSLSAGYRM-AANAAWPALLNEQWQAKT--PVVN-ASISGDTS--QQGLARLPaLLKQHQPRWVLVELGGNDGLRGFPPQQTEQT--LRTIIKD 109
                    9********98.9*****************..8888.********..999999998889999************************9..******* PP

                    HCCC...GEEECEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-HHHHHHHCCCCCGGBBTTS.SSB-HH CS
  Lipase_GDSL_2  97 lraaapgarilvlgplpptpeaaadarelnaviaaynealrevaaeegvpfvDlhdaladsgerladlladdglHPnaa 175
                    ++aa       +++pl ++ + +a+    +++++a+ +++ ++a+e  +p++++   + ++ + ++ ++ ddg+HPn +
     CTQ26821.1 110 IKAA-------NAEPLLMQIHLPANYG--RRYNEAFGAIYPALAKEFAIPLLPF---FMEEVYLKPQWMQDDGIHPNRD 176
                    ****.......6666666666665554..58999****************9999...7777777888899999****75 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   2.7e-17   1.6e-13       2     199 ..      20     184 ..      19     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 2.7e-17
                  EEEESHHHHTTTHHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCHECTTTECHHHHHCTTSEEEEE--CTCC-EECSSCTTTCEEHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL   2 vafGDSltdGdgaatlntiqlktpknlnefdlaldrianignkgasdnelqqllnkyplkseqlkalhpdlviislGtNDsnlgkkstdaakkeaeey 99 
                  + +GDSl++G+  a  +++    +  ++++      + n+++ g+ +++   +l         lk+ +p +v+++lG+ND           + ++++ 
   CTQ26821.1  20 LILGDSLSAGYRMAANAAWPALLNEQWQAK----TPVVNASISGDTSQQGLARL------PALLKQHQPRWVLVELGGNDG--------LRGFPPQQT 99 
                  689********9999999999998888865....78999999999999999999......889999***************........********* PP

                  HHHHHHHHHHHHHHHHTTEEEEEEE-SSTCHCTCCCCHCCHHHHHHHHHHHHHHHHHHHHHCTEEEECHHHHHHHTHCCGCHCHTSSSB-HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL 100 iknlreaikelkeegapkaivvlvsppglgpqeekdakklgekgnefvgeynqrlndlaekdgfavvDlydelqglsgieqlkaDglHpsekgyekla 197
                   + lr  ik +k+++a  ++  +  p + g           +++ne+ g + +   +la+++ +++++++ e   l+  + +  Dg+Hp+  ++  +a
   CTQ26821.1 100 EQTLRTIIKDIKAANAEPLLMQIHLPANYG-----------RRYNEAFGAIYP---ALAKEFAIPLLPFFMEEVYLKPQWMQD-DGIHPNRDAQPFIA 182
                  ************777444444444444444...........588888888888...7799999*****998888886555544.*********99999 PP

                  HH CS
                  xx RF
  Lipase_GDSL 198 el 199
                  ++
   CTQ26821.1 183 DW 184
                  86 PP

>> OSK  OSK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.5e-06     0.057      51     123 ..      56     130 ..      43     139 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.5e-06
                 EETT--HHHHHHHHHT----T..-EEEEE--HHHHHTT--HHHHHHHHHHHHHHHHHTT-EEEEE-----GGGTT CS
         OSK  51 ciSGlTiseaakrlekielis..srvvvnlGsvDilngktlvelehDlteLlkelrernvaiilttlaPlaNlsa 123
                  iSG T ++   rl  +   +    v+v+lG  D l+g +  + e+ l++++k+++  n++++l  +   aN++ 
  CTQ26821.1  56 SISGDTSQQGLARLPALLKQHqpRWVLVELGGNDGLRGFPPQQTEQTLRTIIKDIKAANAEPLLMQIHLPANYGR 130
                 699*****99999988765543577****************************************9998888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1553.47
//
Query:       CTQ26822.1  [L=228]
Description: putative transporter subunit: ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-29  103.8   0.0    1.4e-29  103.3   0.0    1.2  1  ABC_tran     ABC transporter
    5.2e-07   29.8   0.1     0.0061   16.4   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    9.9e-05   22.0   0.2     0.0002   21.0   0.2    1.4  1  AAA_29       P-loop containing region of AAA domain
    0.00012   21.6   0.0     0.0063   16.0   0.0    2.2  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00027   20.9   0.3    0.00046   20.1   0.3    1.4  1  RsgA_GTPase  RsgA GTPase
     0.0005   20.3   0.2     0.0046   17.2   0.2    2.2  1  AAA_22       AAA domain
     0.0029   18.0   3.1      0.012   16.0   3.1    1.9  1  AAA_16       AAA ATPase domain
     0.0041   16.9   0.0       0.57    9.8   0.0    2.1  2  AAA_15       AAA ATPase domain
  ------ inclusion threshold ------
       0.02   14.8   0.1       0.04   13.9   0.1    1.5  1  NACHT        NACHT domain
      0.052   13.3   0.0      0.094   12.4   0.0    1.5  1  AAA_30       AAA domain
      0.081   13.0   0.1        0.2   11.8   0.1    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
      0.096   12.3   0.3        1.2    8.7   0.2    2.6  2  AAA_25       AAA domain
       0.11   12.3   0.0       0.16   11.7   0.0    1.4  1  IstB_IS21    IstB-like ATP binding protein
       0.16   11.6   0.1       0.28   10.9   0.1    1.3  1  AAA_24       AAA domain
       0.19   10.5   0.1       0.25   10.1   0.1    1.1  1  DLIC         Dynein light intermediate chain (DLIC)
       0.26   10.4   0.0       0.26   10.4   0.0    1.1  1  G-alpha      G-protein alpha subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.0   1.3e-32   1.4e-29       2     136 ..      27     174 ..      26     175 .. 0.89

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 1.3e-32
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren.............esde 83 
                   v+l +k+ +++a++Ge+G+GKStLl++lagl +  +Ge+ + gk+l++     +     +++g+++q   l p+l++ en             +s+ 
  CTQ26822.1  27 TGVELVVKPRQTIALIGESGSGKSTLLAILAGLDDGSSGEVSMLGKPLHRmdeeARAALRAQHVGFVFQSFMLIPTLNALENvelpallrgasdsQSRG 125
                 679999********************************************9886666667799****************************76554555 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++ ++l++lgl +  ++     p++LSgG++qrvalara+  +p +l++DEpt
  CTQ26822.1 126 DARALLEQLGLGKRLHHL----PAQLSGGEQQRVALARAFNGRPAILFADEPT 174
                 588888888888855555....6*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.5e-06    0.0061       3      26 ..      40      60 ..      39      87 .. 0.83
   2 !   11.6   0.0   0.00016      0.18     249     301 ..     156     209 ..     122     211 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.5e-06
      AAA_21  3 vliGpNgsGKSnLLdaldllarld 26
                +liG  gsGKS+LL +l +l   d
  CTQ26822.1 40 ALIGESGSGKSTLLAILAGL---D 60
                79***************999...3 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00016
      AAA_21 249 tallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSpll 301
                 ++  + ++ +++l+ DEp  +L+ +   ++++ll ++++++g+ +il+TH+pll
  CTQ26822.1 156 ALARAFNGRPAILFADEPTGNLDRQTGDKIADLLfSLNREHGTTLILVTHDPLL 209
                 344444555599999********99999***88877777789**********99 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.2   1.8e-07    0.0002      16      42 ..      30      55 ..      25      60 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.8e-07
      AAA_29 16 tieidlkgatlltGpsGsGKSTllDAi 42
                ++ +++++++ l+G+sGsGKSTll Ai
  CTQ26822.1 30 ELVVKPRQTIALIGESGSGKSTLL-AI 55
                5667888899*************9.65 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.6e-06    0.0063      26     210 ..      38     218 ..      26     225 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.6e-06
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--..BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk..skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkke 122
                   a++G+ GSGKs ll Ai  + G ++ ++   + l + +h+  ++++a++   +v  +f+      ++ +   +++  +   g s+ +  g      e
  CTQ26822.1  38 TIALIGESGSGKSTLL-AI--LAGLDDGSSGEVSMLGKPLHRmdEEARAALRAQHVGFVFQSFMLI-PTLNALENVELPALLRGASDSQSRGDARALLE 132
                 5678899999998887.45..356666666777777777777644555555555677777665554.55555556666666666665555555555555 PP

                 HHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvg 210
                    l ++ +  + +LSgGe++ vala  f   + +pa l + De   +LD +   k+a+ll + + +  + +i ++++  + +++d+ ++
  CTQ26822.1 133 QLGLGKRLHHLPAQLSGGEQQRVALARAF---NGRPAIL-FADEPTGNLDRQTGDKIADLLFSLNREhgTTLILVTHDPLLAARCDRRLR 218
                 5555555555666********99999775...4455554.46******************985544434889999999888887777665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.3   4.1e-07   0.00046      96     131 ..      32      68 ..       5      75 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.1e-07
                  HCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  96 llkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  ++k  +t++l+G+SG GKStL+  l++ ++ + gevs
   CTQ26822.1  32 VVKPrQTIALIGESGSGKSTLLAILAGLDDGSSGEVS 68 
                  45555999*******************9999999998 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   4.1e-06    0.0046       5      38 ..      36     107 ..      32     210 .. 0.56

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.1e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee........................................e 38 
                 ++ ++++GesG+GK+tll+ l+  +d  +   e                                        e
  CTQ26822.1  36 RQTIALIGESGSGKSTLLAILAGLDDGSS--GEvsmlgkplhrmdeearaalraqhvgfvfqsfmliptlnalE 107
                 7789**************99887765321..1134666666666666666666655555544444444444333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   3.1   1.1e-05     0.012      19     125 ..      32     159 ..      15     206 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-05
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekd..........................ggiflrgkcdqlesaipysalaqalareellrqlldeaes 91 
                 v ++r + + l+GesG+GKs+l+  l+  l +                           ++ f+ + +         ++ ++al++   l +ll+ a++
  CTQ26822.1  32 VVKPR-QTIALIGESGSGKSTLLAILAG-LDDGssgevsmlgkplhrmdeearaalraqHVGFVFQSFML-------IPTLNALEN-VELPALLRGASD 120
                 55555.7899*************88874.44445777777777777777755444443333333333333.......479999956.777777777777 PP

      AAA_16  92 aeleawrekleeala.................avpelagaeasrllellkr 125
                 ++ + ++++l+e+l+                 +            + +l+r
  CTQ26822.1 121 SQSRGDARALLEQLGlgkrlhhlpaqlsggeqQ------------RVALAR 159
                 788888888888888788666544333333220............222222 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00051      0.57      25      44 ..      38      57 ..      26      84 .. 0.84
   2 ?    5.2   0.0     0.013        14     321     368 ..     162     209 ..     152     210 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00051
      AAA_15 25 ltvliGkNnsGKSsileald 44
                +  liG+ +sGKS++l +l 
  CTQ26822.1 38 TIALIGESGSGKSTLLAILA 57
                679*************9995 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.013
      AAA_15 321 eeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHSphi 368
                 + +++il+ +EP  +L  q    +++ll +l +++ t +i+ TH p +
  CTQ26822.1 162 NGRPAILFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDPLL 209
                 46899****************************************976 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   3.5e-05      0.04       2      21 ..      38      57 ..      37      64 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.5e-05
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +++l Ge+GsGK+tLl+ la
  CTQ26822.1 38 TIALIGESGSGKSTLLAILA 57
                899*************9776 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.4e-05     0.094      13      52 ..      31      70 ..      20      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.4e-05
      AAA_30 13 lltsgdrvavltGpAGtGKttalkalreaweaaggrvigl 52
                l+ +++++ +l G  G+GK+t+l+ l+ + + + g+v +l
  CTQ26822.1 31 LVVKPRQTIALIGESGSGKSTLLAILAGLDDGSSGEVSML 70
                666788899*****************99988887777665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00018       0.2       2      21 ..      39      58 ..      38      72 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                +a++G + +GKStL+  l g
  CTQ26822.1 39 IALIGESGSGKSTLLAILAG 58
                89*************98876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.2    0.0011       1.2      31      54 ..      34      57 ..      26      59 .. 0.83
   2 ?    0.1   0.0      0.44     5e+02     166     188 ..     183     205 ..     167     225 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0011
      AAA_25 31 pagelallaGapgtGKttlaldla 54
                    +++l+G +g+GK+tl+  la
  CTQ26822.1 34 KPRQTIALIGESGSGKSTLLAILA 57
                5677899************97665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.44
      AAA_25 166 galvealeriarrtgaavllvhH 188
                 +++ + l ++ r++g +++lv H
  CTQ26822.1 183 DKIADLLFSLNREHGTTLILVTH 205
                 44555555666777777777777 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015      0.16      17      66 ..       5      55 ..       1      89 [. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
   IstB_IS21 17 ktledidfraarsldkrkvkeLatlsfi.ekkenivllGpsGvGKshlaia 66
                + le  + +++ +  +++++ L + + + + ++ i+l+G sG GKs l + 
  CTQ26822.1  5 NILEVHHLKKSVGQGEHQLSILTGVELVvKPRQTIALIGESGSGKSTLLAI 55
                556666666677777888888988887526699************987544 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00025      0.28       4      22 ..      38      56 ..      36      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00025
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 i+++G+sg+GK+tl++ l
  CTQ26822.1 38 TIALIGESGSGKSTLLAIL 56
                799***********99765 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00023      0.25      26      54 ..      37      65 ..      28      81 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00023
        DLIC 26 ksvlvlGedgsGkttliaklqGveeekkG 54
                +++ ++Ge+gsGk+tl+a l G+++   G
  CTQ26822.1 37 QTIALIGESGSGKSTLLAILAGLDDGSSG 65
                56889*******************98877 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00023      0.26      25      72 ..      38      98 ..      19     208 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00023
                EEEEEESTTSSHHHHHHHHHHHCS--.............--HHHHHCCHHHHHHHHHHHHH CS
     G-alpha 25 kllllGqseSGKsTilkqlkllykkg.............fseeelatwraviqlnivrsik 72
                ++ l+G+s+SGKsT+l  l  l +++             ++ee +a++ra     + +s+ 
  CTQ26822.1 38 TIALIGESGSGKSTLLAILAGLDDGSsgevsmlgkplhrMDEEARAALRAQHVGFVFQSFM 98
                799************9887776655556666666666633333334466666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1819.97
//
Query:       CTQ26823.1  [L=804]
Description: putative ABC transporter permease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-05   23.4   3.9      0.036   14.4   0.0    2.8  3  MacB_PCD         MacB-like periplasmic core domain
     0.0028   18.1  43.2      0.018   15.5   8.7    6.1  6  FtsX             FtsX-like permease family
  ------ inclusion threshold ------
      0.031   14.5   0.0        2.1    8.5   0.0    2.3  2  CDC48_N          Cell division protein 48 (CDC48), N-terminal
      0.079   13.0   0.0         10    6.2   0.0    3.0  3  Molydop_binding  Molydopterin dinucleotide binding domain


Domain annotation for each model (and alignments):
>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.9e-06     0.036       4     169 ..      18     180 ..      15     208 .. 0.61
   2 ?   -6.0   2.8         4   1.8e+04       4      19 ..     248     263 ..     246     264 .. 0.82
   3 !    9.7   0.0   0.00022      0.99      85     140 ..     528     600 ..     458     652 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.9e-06
    MacB_PCD   4 tvLGiaiGvaaviaivslgeglqasvlsqisdl..gnlvtvtpgkgsgeslsd.pdvealrrevpveavapvv...tvrgggsgeeevtvvgvdpdyfk 96 
                   L++ ++va+v a++s+ + + + +++q ++   g+  t++ ++    ++++ + ++a r+  +   v  ++   t +++g++ + + v +vd  y+ 
  CTQ26823.1  18 VWLALSLAVACVLALGSISDRMEKGLSQQSREFmaGD-RTLRSSR----EVPAeWIAQA-RK--SGLTVGEQLsfaTMTFAGDTPQLADVKAVDDRYPL 108
                 5699************************999776532.4565543....2333022211.11..22224444322211222222333456666633433 PP

    MacB_PCD  97 vfglklaeGrff.teadlrggpnvvvigeelaerlf.pvGdtirl..kpftVvGvledpp..gsgsalg.ddavylpltt 169
                  +g       +  ++  l+ ++++v++  +l   l  + Gdti +   +++++G + ++p  g + + + ++++++++++
  CTQ26823.1 109 -YGT------LEtQPPGLKPQAGSVLLAPRLMALLNlKTGDTIDVgdATLRIAGEVIQEPdaGFNPF-QmAPRLMMNMAD 180
                 .333......2102233344888899999999775599****************9755332333322.247778877554 PP

  == domain 2  score: -6.0 bits;  conditional E-value: 4
    MacB_PCD   4 tvLGiaiGvaaviaiv 19 
                 ++L++ ++vaav + +
  CTQ26823.1 248 ALLTLLLAVAAVAVAM 263
                 6899999999998876 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00022
    MacB_PCD  85 vtvvg..vdp....dyfkvfglklaeGrffteadlrg.....gpnvvvigeelaerlf.pvGdtirl......k 140
                 ++++g  +d     ++ + ++l+++e r+   + l +     +p++v i e+la+rl  ++Gdt+++       
  CTQ26823.1 528 TQINGqsTDGnkdeALNRELNLTWSEQRPD-HNPLVAgswppKPGEVSIEEGLAQRLGiKIGDTVTFtgdtqeF 600
                 334443333211112222233333333332.122221345558999**********99********98887443 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.79   3.5e+03      70      84 ..      17      31 ..      10      51 .. 0.55
   2 ?    2.9   0.2     0.033   1.5e+02      68      93 ..     243     268 ..     232     270 .. 0.83
   3 !   15.5   8.7   4.1e-06     0.018       4      85 ..     274     353 ..     272     406 .. 0.66
   4 ?    2.7   4.5     0.039   1.7e+02      18      86 ..     404     471 ..     401     475 .. 0.59
   5 ?    0.4   0.3      0.21   9.3e+02      29      46 ..     683     700 ..     670     705 .. 0.89
   6 !   15.0   1.5   5.6e-06     0.025       2      83 ..     709     784 ..     708     795 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.79
        FtsX 70 liiivlllllallag 84
                ++ ++l+l +a + +
  CTQ26823.1 17 IVWLALSLAVACVLA 31
                222222222222222 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.033
        FtsX  68 tvliiivlllllallagllsiskilk 93 
                  +l+ ++l llla++a+++++s+ ++
  CTQ26823.1 243 FLLLSALLTLLLAVAAVAVAMSHYCR 268
                 57788899999999999999998877 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 4.1e-06
        FtsX   4 igilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagl 85 
                 ++il++lG+ + q+++l+++++ll+  ++ + G ++gl++  ll  vl  ++   +l+    + ++++i + +++ +l+ gl
  CTQ26823.1 274 VAILKTLGAGRSQLRKLIVGQWLLLLTLSVITGGVAGLALERLLLLVLKPVLP-AALPAASGWPWLWAIGATGVISLLV-GL 353
                 79*****************************************9999999965.3333333333333333333332222.22 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.039
        FtsX  18 lllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagll 86 
                 l+ +l  +++++l++ ++G gl++l+  l  + l   +   +  +  +++t+  +++++l ++lla+ll
  CTQ26823.1 404 LWSVLAGAVVLALLCGLVGWGLLWLLKRLTLKALPLRLA-VNRLLRQPWSTLSQLAAFSLSFMLLALLL 471
                 555666667777777777777777777766666655544.55555555555555555555555555444 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.21
        FtsX  29 tlvalviGlglgllaaql 46 
                 ++v+lv ++g++ll+aq+
  CTQ26823.1 683 VMVGLVTACGVLLLLAQV 700
                 5799***********997 PP

  == domain 6  score: 15.0 bits;  conditional E-value: 5.6e-06
        FtsX   2 reigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllalla 83 
                 +e+ + r+lG+ k  ++  l+ e +l++lv+ +++ + + +a+ +l++++      +  ++  d+  ++++ + + +l++l 
  CTQ26823.1 709 QELVVWRTLGAGKSLLRATLWAEFALLGLVSGLVAAIGAEVALAMLQTKV------FDFPWAPDWRLWVLLPLTGAVLLSLC 784
                 688999*****************************777777777766666......56777888877777777777777765 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.021        95      15      37 ..     124     146 ..     119     161 .. 0.86
   2 ?    8.5   0.0   0.00048       2.1      17      55 ..     573     612 ..     569     616 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.021
                 TEEEE-HHHHHHHTS-TTSEEEE CS
     CDC48_N  15 givridpedmeelglepgdvvei 37 
                 g v + p  m+ l+l++gd++++
  CTQ26823.1 124 GSVLLAPRLMALLNLKTGDTIDV 146
                 77999***************987 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00048
                 EEE-HHHHHHHTS-TTSEEEEEC.CCCEEEEEEEBSTTST CS
     CDC48_N  17 vridpedmeelglepgdvveieg.krkTvaivwpaepede 55 
                 v i +   ++lg++ gd+v+ +g +++  a+v + ++ d+
  CTQ26823.1 573 VSIEEGLAQRLGIKIGDTVTFTGdTQEFSAKVSSVRKVDW 612
                 78899999***************666699*****999987 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.053   2.4e+02      30      52 ..     124     146 ..     114     158 .. 0.86
   2 ?    0.1   0.0      0.18   8.2e+02      28      49 ..     171     192 ..     162     194 .. 0.78
   3 ?    6.2   0.0    0.0023        10      31      63 ..     572     604 ..     561     612 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.053
                      -EEEEEHHHHHHHT--TT-EEEE CS
  Molydop_binding  30 evveinpedAaalGikdGdlVev 52 
                        v++ p+ +a l++k+Gd++ v
       CTQ26823.1 124 GSVLLAPRLMALLNLKTGDTIDV 146
                      47999***************998 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.18
                      SS-EEEEEHHHHHHHT.--TT-E CS
  Molydop_binding  28 epevveinpedAaalG.ikdGdl 49 
                      +p ++++n +d+a+ G ++ G +
       CTQ26823.1 171 AP-RLMMNMADVAKTGaVQPGSR 192
                      55.99*********995565655 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0023
                      EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEE CS
  Molydop_binding  31 vveinpedAaalGikdGdlVevesrrGsvevra 63 
                       v i +  A++lGik Gd+V+ + +  ++ +++
       CTQ26823.1 572 EVSIEEGLAQRLGIKIGDTVTFTGDTQEFSAKV 604
                      57888889*************999998888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 5955.77
//
Query:       CTQ26824.1  [L=381]
Description: putative outer membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2898.74
//
Query:       CTQ26825.1  [L=358]
Description: tRNA 2-selenouridine synthase, selenophosphate-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-05   24.4   0.0     0.0059   17.1   0.0    3.1  2  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.3e-07    0.0059       7      37 ..       9      58 ..       4     128 .. 0.54
   2 !    2.8   0.0     0.009   1.6e+02      28      84 ..     213     276 ..     182     297 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.3e-07
   Rhodanese  7 ellekgkvallDvRppeeYekghIpgAvnv....................s 37
                ++l+++ + l+DvR+p+e++++  p A+n+                    +
  CTQ26825.1  9 AILASDTP-LIDVRAPVEFSQSAMPAAINLplmndeeraavgtcykrqgpE 58
                55555543.*********************766654444444333333330 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.009
   Rhodanese  28 ghIpgAvnv.....skdtlsrakkseapllelpeellel..gidnkktvvvycdgggraaaaaa 84 
                 gh  gA ++      ++ +s    +e+p++  +e+l+e+  ++ + + +  y++++g +a  ++
  CTQ26825.1 213 GHMIGANHLpeslrLRMAQSPLAVVEDPFNVRLERLREEyfDRMYRDFIAAYGEEKGWQAYGEY 276
                 5555555555555559999999999999999999999998888999999999999888555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.58
# Mc/sec: 1847.09
//
Query:       CTQ26826.1  [L=355]
Description: N5-carboxyaminoimidazole ribonucleotide synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-55  187.1   0.0    2.4e-55  186.7   0.0    1.1  1  ATP-grasp  ATP-grasp domain
    6.7e-17   60.9   0.0    1.3e-16   60.0   0.0    1.5  1  PurK_C     Phosphoribosylaminoimidazole carboxylase C-termina


Domain annotation for each model (and alignments):
>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.7   0.0   2.7e-59   2.4e-55       2     171 .]      88     254 ..      87     254 .. 0.97

  Alignments for each domain:
  == domain 1  score: 186.7 bits;  conditional E-value: 2.7e-59
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHCGTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEEEE CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqalealkeekvivEefvpfekElsvlvvrsaeGetafypvvetvq 100
                 +klgl++++++++++k+e+ +++++lg  ++vK+r++gydG+Gq+ +r++e  +  ++++  +++ivE+ ++f+ E+s++++r+ +G+t+fyp++ +++
  CTQ26826.1  88 DKLGLATAPWQLLADKSEWPAVFARLGELAIVKRRVGGYDGRGQWRLRENEIDQLPADNY--GECIVEQGINFSGEVSLVGARAHDGSTVFYPLTRNLH 184
                 689**********************************************99999999999..************************************* PP

                 ETTEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS--GGGGGHHHHB CS
   ATP-grasp 101 edgilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRpHnsGhvtldaa 171
                 +dgilr+sva  ++++++q++ae+++  i++eL++vGv+a+E+Fv+++g ll+nElapR+HnsGh+t+++a
  CTQ26826.1 185 QDGILRASVAFPQANARQQEQAESMLTAIMNELNYVGVMAMECFVTAEG-LLINELAPRVHNSGHWTQNGA 254
                 **********99**********************************555.*****************9985 PP

>> PurK_C  Phosphoribosylaminoimidazole carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   1.5e-20   1.3e-16       1      54 [.     280     329 ..     280     331 .. 0.93

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 1.5e-20
      PurK_C   1 avMvNlLGedaeekleellaipgahlHlYgKeearpgRKmGHitvvgdsaeele 54 
                 ++M+Nl+G+d   +  ++l++p +hlH+Y Ke +rpgRK+GH+++++++ ++l 
  CTQ26826.1 280 SMMINLIGTDL--N-YDWLKLPLVHLHWYDKE-VRPGRKVGHLNLTDSDTDRLS 329
                 68*********..4.69***************.***************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2598.39
//
Query:       CTQ26827.1  [L=169]
Description: N5-carboxyaminoimidazole ribonucleotide mutase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-63  212.1   1.1    2.7e-63  212.0   1.1    1.0  1  AIRC      AIR carboxylase
  ------ inclusion threshold ------
      0.036   14.8   0.0      0.061   14.1   0.0    1.3  1  RraB      Regulator of ribonuclease activity B
       0.05   13.3   0.0      0.073   12.7   0.0    1.2  1  DUF2334   Uncharacterized protein conserved in bacteria (DUF2
      0.055   14.0   0.4        9.3    6.8   0.1    2.2  2  MFMR      G-box binding protein MFMR


Domain annotation for each model (and alignments):
>> AIRC  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.0   1.1   6.1e-67   2.7e-63       2     147 ..      10     157 ..       9     158 .. 0.98

  Alignments for each domain:
  == domain 1  score: 212.0 bits;  conditional E-value: 6.1e-67
                 EEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHCHTTTEEEEEEEEESS--HHHHHHHHSSS-EEEEEE--STTCCHHHHHHHH CS
        AIRC   2 VgiimGSdsDlevmkkaaeilkelgveyevrvvSahrtpeelleyaeeaeerglkviIagAGgaahLpgvvaslttlPVigvPvkskalkgldsllSiv 100
                 ++i+mGS+sD+ +m+ +aeil++l+v+y+v+vvSahrtp++l+++ae+ae++g++viIagAGgaahLpg++a++t +PV+gvPv+s al+g+dsl+Siv
  CTQ26827.1  10 IAIVMGSKSDWATMQFTAEILDALNVPYHVEVVSAHRTPDKLFSFAESAESHGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIV 108
                 89************************************************************************************************* PP

                 T--TTS--EE-SST..HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHH CS
        AIRC 101 qmPsgvpvatvaig..kaknAallAaqilalkdeelaekleeyreelke 147
                 qmP+g+pv t+aig  +a+nA+llAaqila +d+el+++l+++r+++++
  CTQ26827.1 109 QMPRGIPVGTLAIGkaGAANAGLLAAQILAQHDTELHQRLSAWRQAQTD 157
                 **************9999**************************99876 PP

>> RraB  Regulator of ribonuclease activity B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.4e-05     0.061      17      52 ..      32      67 ..      24      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
        RraB 17 dldkpreiehhfyfedeedlekfaeeleklgyeved 52
                 l+ p+ +e   +  + ++l +fae +e++gy+v  
  CTQ26827.1 32 ALNVPYHVEVVSAHRTPDKLFSFAESAESHGYQVII 67
                6899*****************************976 PP

>> DUF2334  Uncharacterized protein conserved in bacteria (DUF2334)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.6e-05     0.073      12      43 ..      17      48 ..      12      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.6e-05
     DUF2334 12 gedleklkeiadyldkegipfsvavIPrykdp 43
                ++d+++++ +a++ld+ ++p++v v+  ++ p
  CTQ26827.1 17 KSDWATMQFTAEILDALNVPYHVEVVSAHRTP 48
                589***********************999999 PP

>> MFMR  G-box binding protein MFMR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0046        21      24      60 ..      10      46 ..       1      56 [. 0.59
   2 ?    6.8   0.1    0.0021       9.3      56      97 .]      70     111 ..      51     111 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0046
        MFMR 24 qsavavvypdWsalqayygsgv..lppgffasavasspa 60
                 + v+ ++ dW+++q      +  +++  ++ +v+s++ 
  CTQ26827.1 10 IAIVMGSKSDWATMQFTAE--IldALNVPYHVEVVSAHR 46
                344556789******6533..323333334566667665 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0021
        MFMR  56 asspaphPymWgaqplmppygtPvpYaalyppggvyahpsvp 97 
                 a + a  P m +a+ l+p  g Pv  aal   +++y+  ++p
  CTQ26827.1  70 AGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMP 111
                 34555679*****************9***9999999977775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1282.23
//
Query:       CTQ26828.1  [L=112]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   12.4   2.3       0.17   12.3   2.3    1.1  1  DUF805    Protein of unknown function (DUF805)
          3    8.2   8.6          1    9.7   5.4    1.8  2  VirB3     Type IV secretory pathway, VirB3-like protein
        7.2    6.2   7.5        1.4    8.5   0.0    2.2  2  Saf_2TM   SAVED-fused 2TM effector domain


Domain annotation for each model (and alignments):
>> DUF805  Protein of unknown function (DUF805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.3   2.9e-05      0.17      14      92 ..      12      91 ..       1     109 [. 0.61

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.9e-05
      DUF805 14 w..wfvlfllllvivlallaavlaaaavasalsvvlallllvpslavtvRRlHDtgrsgwllllllvplialllllvllll 92
                w  ++++++ l v ++al+  v+ + +++ +  ++la+++++ ++ ++  R HD     ++lll+   ++ + ++l+++++
  CTQ26828.1 12 WgmIIAILNPLGVSYIALIGVVI-GNTLTFVWCTMLAWAIYFYAIYLLCTRPHDSRLVQIYLLLMGTLMLPWGVVLLITCI 91
                23344444455555545554444.34555556666666777777************9999877666656655444444443 PP

>> VirB3  Type IV secretory pathway, VirB3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.4   0.00017         1      16      73 ..      22      77 ..      20      81 .. 0.81
   2 ?    0.2   0.5      0.16   9.3e+02      14      32 ..      73      91 ..      72      93 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00017
       VirB3 16 lGvplelvllnllvsvilflvglslwillllvplhlvlrliakrDpqmfrvlllrlkt 73
                lGv++ +++ +++  +++f++   l++++ + +++l++++   +D ++++++ll + t
  CTQ26828.1 22 LGVSYIALIGVVIGNTLTFVWCTMLAWAIYFYAIYLLCTR--PHDSRLVQIYLLLMGT 77
                7*******************99988888555555555544..5999999*99887765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.16
       VirB3 14 mllGvplelvllnllvsvi 32
                +l+G  + ++ ++ll+++i
  CTQ26828.1 73 LLMGTLMLPWGVVLLITCI 91
                5788888888888888776 PP

>> Saf_2TM  SAVED-fused 2TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   4.3      0.22   1.3e+03      65      90 ..      25      51 ..      10      55 .. 0.81
   2 ?    8.5   0.0   0.00024       1.4      66      97 ..      67      98 ..      61     100 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.22
     Saf_2TM 65 eivlaiilvigv.llivvGavllilry 90
                +++++i +vig  l++v++ +l+++ y
  CTQ26828.1 25 SYIALIGVVIGNtLTFVWCTMLAWAIY 51
                678888888986156899*99999866 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00024
     Saf_2TM 66 ivlaiilvigvllivvGavllilryvneakrq 97
                +v++ +l+ g l++ +G+vlli   ++e+k +
  CTQ26828.1 67 LVQIYLLLMGTLMLPWGVVLLITCIMREIKVN 98
                68999***********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 800.67
//
Query:       CTQ26829.1  [L=240]
Description: UDP-2,3-diacylglucosamine pyrophosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-10   39.9   0.9    1.9e-09   37.9   0.9    1.8  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
    1.4e-09   38.8   0.2      3e-09   37.7   0.2    1.6  1  Metallophos    Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.9   2.2e-13   1.9e-09       1     136 [.       1     205 [.       1     224 [. 0.73

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 2.2e-13
  Metallophos_2   1 MklaiiSDlHsnldaleav......lealkevgvdaiihaGD....l.eeeep........evleellela........pvlaVrGNnDeevveed 69 
                    M  ++i+DlH + ++++        l + ++ ++da++ +GD    + ++ +p        ++                p + ++GN D       
     CTQ26829.1   1 MATLFIADLHLQTEEPAITagflrfL-QGEARQADALYILGDlfeaWiGDDDPnplhqqiaSA-------IkavvdagvPCYFIHGNRD-----FL 83 
                    8899******5444444444554422.2233567********555414455553333222223.......133456679**********.....78 PP

  Metallophos_2  70 vlreaaelgtdl..peeaelelagekvlliHgdpl...................................................gvkdalaell 112
                    v++++a+ ++ +   ee++l+l g++vl++Hgd+l                                                   + +d + +++
     CTQ26829.1  84 VGQRFARQSGMIllAEEERLDLYGREVLIMHGDTLctddqgylafrakvhtpwiqrlflalplfirrriaarmradskaanssksmEIMDVNPQAV 179
                    888888888777545******************99**************************************99999999999994444444444 PP

  Metallophos_2 113 keaeegsd..vvvcGHtHvpevekeg 136
                     +a+e++    +++GHtH+p v + +
     CTQ26829.1 180 VDAMERHHvqWLIHGHTHRPAVHELQ 205
                    44444444469*********887763 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.2   3.3e-13     3e-09       3     204 .]       3     199 ..       1     199 [. 0.67

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 3.3e-13
                  EEEEESBTB.TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS.......HHHHHHHHHHHHHHHHTSEEEEEC-TTSCHHH.HHHHHHHHHHHH CS
  Metallophos   3 ilvigDlHl.algggqlddllkllddllreekpdlvllaGDlvdrg.......dlekellellaalvkypipvylllGNHegfee.ellnkygylgif 91 
                   l+i+DlHl  ++++  + +l++l+  +r+  +d++ ++GDl++         +l++ ++  ++a+v+ ++p+y+++GN + f     + ++      
   CTQ26829.1   3 TLFIADLHLqTEEPAITAGFLRFLQGEARQ--ADALYILGDLFEAWigdddpnPLHQQIASAIKAVVDAGVPCYFIHGNRD-FLVgQRFARQS----- 92 
                  799******998999999999999776555..7888888**9999888998888888788888888888************.55545555544..... PP

                  HHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCCHHHHHH............HHHHTTCSEEEEEESSESSCSSSC CS
  Metallophos  92 sepwrsdaevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepgdewlkd............lekrekadwvivlgHsplyrgsgy 177
                  +++   + e +    l +      +vl++hG+    +  +d++g l ++  + +p   w+++              +r +ad + + + + ++     
   CTQ26829.1  93 GMILLAEEERL---DLYG-----REVLIMHGD----TLCTDDQGYLAFRAKVHTP---WIQRlflalplfirrrIAARMRADSKAANSSKSME---IM 172
                  44444443332...2222.....379999999....4556666666666555554...55553322233333344444444444444444444...66 PP

                  SCCHHHHHHHHHHTTESEEEEESSSSE CS
  Metallophos 178 lfgdealedllkkygvdlvisGHtHvy 204
                    +++a+ d  +++ v++ i+GHtH++
   CTQ26829.1 173 DVNPQAVVDAMERHHVQWLIHGHTHRP 199
                  666666669****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1922.16
//
Query:       CTQ26830.1  [L=164]
Description: peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-48  165.4   1.4    1.3e-48  165.3   1.4    1.0  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.3   1.4   7.1e-53   1.3e-48       1     158 []       1     162 [.       1     162 [. 0.92

  Alignments for each domain:
  == domain 1  score: 165.3 bits;  conditional E-value: 7.1e-53
  Pro_isomerase   1 lvdietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqekkggesiraipdEitsklkhkrGalamart 96 
                    +v+++t+ +G+ivi+ f+dkaP+tv+nFl++++egfYd+t+FhRvi+gfm+qgG ++ +++    +k+++    +i++E ++ lk++rG+lamart
     CTQ26830.1   1 MVTFHTN-HGDIVIKTFDDKAPETVKNFLDYCREGFYDNTIFHRVINGFMIQGGGFEPGMK----QKATK---SPIQNEANNGLKNTRGTLAMART 88 
                    689***7.***********************************************877644....22233...48********************* PP

  Pro_isomerase  97 gkepnsagsqFfItlkeaphldg........kytvFGkVveGmdvvekiekvetde.....erpkknvkivsaev 158
                     ++p+sa+ qFfI++ ++++l+         +y+vF +VveGmdvv+ki++v t +     + pk++v i+s++v
     CTQ26830.1  89 -QAPHSATAQFFINVVDNDFLNFsgeslqgwGYCVFAEVVEGMDVVDKIKAVATGRsgmhqDVPKDDVIIKSVTV 162
                    .79*******************99***************************999888899899999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1392.45
//
Query:       CTQ26831.1  [L=461]
Description: cysteinyl-tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.2e-145  482.7   0.1   5.6e-145  482.3   0.1    1.1  1  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
    2.8e-26   91.8   5.7    3.8e-26   91.4   2.1    2.6  2  DALR_2        DALR domain
    4.3e-15   55.3   1.8    7.6e-07   28.2   0.2    2.1  2  tRNA-synt_1g  tRNA synthetases class I (M)
    3.8e-08   32.6   0.1    1.9e-05   23.8   0.0    2.2  2  tRNA-synt_1f  tRNA synthetases class I (K)
    3.7e-06   25.5   0.1    1.5e-05   23.5   0.0    1.8  2  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
  ------ inclusion threshold ------
      0.023   14.8   0.0      0.049   13.7   0.0    1.4  1  Mut7-C        Mut7-C RNAse domain
       0.12   13.1   0.1       0.31   11.8   0.1    1.7  1  DUF5327       Family of unknown function (DUF5327)


Domain annotation for each model (and alignments):
>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  482.3   0.1  2.2e-148  5.6e-145       2     300 ..      15     313 ..      14     314 .. 0.99

  Alignments for each domain:
  == domain 1  score: 482.3 bits;  conditional E-value: 2.2e-148
                   ---SBTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SB- CS
  tRNA-synt_1e   2 vkpleekkvtlYvCGptvydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvkelaekfieefkkdleaLnvlkptle 98 
                   +kp++ ++v +YvCG+tvyd +h+Gh+R++v+fD+++r+l+ lgY++++v+n+tDidDkiikra+e+++s+ +l++++i+e++kd++aLn+l+p+ e
    CTQ26831.1  15 FKPIHAGEVGMYVCGITVYDLCHIGHGRTFVSFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDSE 111
                   68999******************************************************************************************** PP

                   -BGGGGHHHHHHHHHHHHHTTSEEE-TTS-EEE-GGG-TTTTTTTT--HHHHHHT----S--S-SSTT-EEEEEE--TTS--B--TTSSEEE-SSHH CS
  tRNA-synt_1e  99 prvsekvdeiielvekliekgyaYavsdgdvyfdvskkeeYgklskqnleelelgaegevseekkdkkDfaLWkaskegepswdsPwgkGRPGWhie 195
                   pr++++++eiie+ e+li+kg+aY++++gdv+fdv ++++Yg ls+q+l++l++ga+++v + k++++Df+LWk+skegepsw+sPwg+GRPGWhie
    CTQ26831.1 112 PRATHHIAEIIEITEQLIAKGHAYVADNGDVMFDVPTDPNYGLLSRQDLDQLQAGARVDVVDVKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIE 208
                   ************************************************************************************************* PP

                   HHHHHHHHH-SSEEEEEEEGGGTTTHHHHHHHHHHHHSSS--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS-TTS-EEE- CS
  tRNA-synt_1e 196 CsvmaskllgseidihsGGiDLafPhhenelaqseaafdkqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRllllsahyrsqldfk 292
                   Cs+m++k+lg+++dih+GG+DL+fPhhene+aqs++a+d ++v+y++h+g++++++ekmsksL+nf+t++dvlk +d++++R++l+s hyrsql+++
    CTQ26831.1 209 CSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGEYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETIRYFLMSGHYRSQLNYS 305
                   ************************************************************************************************* PP

                   HHHHHHHH CS
  tRNA-synt_1e 293 eelleeak 300
                   ee+l++a+
    CTQ26831.1 306 EENLKQAR 313
                   *****986 PP

>> DALR_2  DALR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   2.1   1.5e-29   3.8e-26       1      63 []     341     402 ..     341     402 .. 0.99
   2 ?    0.7   0.1      0.29   7.4e+02      29      52 ..     426     449 ..     411     450 .. 0.78

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 1.5e-29
                 HHHHHHTBT--HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHGGGT-S-S-HHHH- CS
      DALR_2   1 kFeeaMdDDFNTaeAiavlFelakeiNralkeedkaaasalkallrelaevLGllqeepeafl 63 
                 +F+eaMdDDFNT+eA++vlF++a+e+Nr lk+ed+aaa+a++a lr+la+vLGll++epeafl
  CTQ26831.1 341 RFIEAMDDDFNTPEAYSVLFDMAREVNR-LKTEDAAAANAMAAHLRKLAAVLGLLEQEPEAFL 402
                 7***************************.********************************97 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.29
                 HHHTT-HHHHHHHHHHHHHHHGGG CS
      DALR_2  29 alkeedkaaasalkallrelaevL 52 
                 a k++d aaa+a++++l+e++ vL
  CTQ26831.1 426 ARKAKDWAAADAARDRLNEMGIVL 449
                 46677889999999*****99887 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.1   9.9e-10   2.5e-06      14     114 ..      36     135 ..      28     149 .. 0.83
   2 !   28.2   0.2     3e-10   7.6e-07     310     372 ..     249     310 ..     229     316 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 9.9e-10
                   --HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHHHHT CS
  tRNA-synt_1g  14 lHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkygrttseehkelvqeifkklkek 110
                    H+Gh ++ +s D++aRy r  g++  +v        +i  +A+++g +  +lv+++ +e++++f+ lni   + +    ++h     ei ++l +k
    CTQ26831.1  36 CHIGHGRTFVSFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDSE-PRATHHIAEIIEITEQLIAK 131
                   7****************************99999999********************************9765432.33334444455666677666 PP

                   T-EE CS
  tRNA-synt_1g 111 gliy 114
                   g+ y
    CTQ26831.1 132 GHAY 135
                   6655 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 3e-10
                   ---S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-HHHHH CS
  tRNA-synt_1g 310 klpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDldfswedfv 372
                   + ++  + +++++v+ +K+SkS g++ +++++l+++da+++RY+l++     + l++s+e++ 
    CTQ26831.1 249 EYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETIRYFLMSG-HYRSQLNYSEENLK 310
                   5666677899**********************************9874.45667888888775 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0011       2.9      27      72 ..      26      71 ..       3      85 .. 0.81
   2 !   23.8   0.0   7.3e-09   1.9e-05     276     326 ..     262     310 ..     234     339 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0011
  tRNA-synt_1f 27 vesGispSGliHiGnlrevltadlvaralrkrgeevrlilisDdmD 72
                     Gi++  l HiG  r  ++ d+var lr +g + + +  + d+D
    CTQ26831.1 26 YVCGITVYDLCHIGHGRTFVSFDVVARYLRFLGYKLKYVRNITDID 71
                  457999999**************************88888888877 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 7.3e-09
  tRNA-synt_1f 276 lkggekmssSkGnvltledwlevaepevlrflilrrkPkkakkldldleil 326
                   +  +ekms+S Gn++t++d+l+++  e++r+++++ + +++++ + + ++ 
    CTQ26831.1 262 V-DREKMSKSLGNFFTVRDVLKYYDAETIRYFLMSGHYRSQLNYSEE-NLK 310
                   3.455****************************99877777666555.555 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.13   3.4e+02      38      66 ..      36      64 ..      31      72 .. 0.91
   2 !   23.5   0.0     6e-09   1.5e-05     518     600 ..     222     303 ..     211     305 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.13
  tRNA-synt_1 38 lHiGhalaktlkdivirykrmkGkevlyv 66
                  HiGh  + +  d+v ry r+ G++ +yv
   CTQ26831.1 36 CHIGHGRTFVSFDVVARYLRFLGYKLKYV 64
                 6***********************99987 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 6e-09
  tRNA-synt_1 518 dmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltlilsdvgrdin 600
                  d+   G+D ++   ++ i +s+   + e + +  +h+ ++  +  KmSKslgN     dv+k y a+ +R++l++ ++ +++n
   CTQ26831.1 222 DIHGGGSDLMFPHHENEIAQSTCAHDGE-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETIRYFLMSGHYRSQLN 303
                  5556677777777777777777665554.6666677666667789*****************************999888776 PP

>> Mut7-C  Mut7-C RNAse domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.9e-05     0.049      10      61 ..      48     102 ..      45     136 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.9e-05
      Mut7-C  10 gklakyLRllGydalyasdv..edeellalaakekrillTr.dreLlkraklkkg 61 
                   +a+yLR+lGy  +y ++    d++++++a++++  ++   dr +++ +k+ ++
  CTQ26831.1  48 DVVARYLRFLGYKLKYVRNItdIDDKIIKRANENGESFVALvDRMIAEMHKDFDA 102
                 679************9997744689*******99988877525555555554444 PP

>> DUF5327  Family of unknown function (DUF5327)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00012      0.31       7      69 ..     357     424 ..     354     456 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
     DUF5327   7 tvlekmeeelekak..kaeseakvrehiaaikalceLlleeea...eekapvpskplseqepvqaqvr 69 
                 +vl  m++e++++k  +a+  ++++ h++ + a   Ll +e++   ++ a+v  ++++e e+  +q  
  CTQ26831.1 357 SVLFDMAREVNRLKteDAAAANAMAAHLRKLAAVLGLLEQEPEaflQSGAQVDDAEVAEIESLIQQRL 424
                 78999*********8778899******************99889995566666666655555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3336.00
//
Query:       CTQ26832.1  [L=70]
Description: putative RNA-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-24   83.4   0.0    7.3e-24   83.4   0.0    1.0  1  S4_2      S4 domain


Domain annotation for each model (and alignments):
>> S4_2  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.0   4.1e-28   7.3e-24       5      64 ..       9      68 ..       4      69 .. 0.95

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 4.1e-28
        S4_2  5 deyItLgqlLKlaglvesGgeaKafiaegeVkvNGevetrRgkKlraGdvVeidgetiev 64
                + +++L++lLKl+g+ esG++aK+ ia+g Vkv+G+vetr+++K++aG++V+++g++++v
  CTQ26832.1  9 HPHVELCDLLKLEGWSESGAQAKIAIADGLVKVDGAVETRKRCKIVAGQTVSFEGQSVTV 68
                589*******************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 577.85
//
Query:       CTQ26833.1  [L=288]
Description: bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methylene-tetrahydrofolate cyclohydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-68  229.1   0.1    2.6e-68  228.4   0.1    1.4  1  THF_DHG_CYH_C   Tetrahydrofolate dehydrogenase/cyclohydrolase
    1.2e-40  138.4   0.1      2e-40  137.7   0.1    1.4  1  THF_DHG_CYH     Tetrahydrofolate dehydrogenase/cyclohydrolase
  ------ inclusion threshold ------
      0.091   12.3   0.0       0.26   10.9   0.0    1.8  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.4   0.1   4.4e-72   2.6e-68       1     158 [.     124     281 ..     124     283 .. 0.99

  Alignments for each domain:
  == domain 1  score: 228.4 bits;  conditional E-value: 4.4e-72
                    SHHHHHHHHTT--SS--HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-B-GG CS
  THF_DHG_CYH_C   1 hplnlgrlvkgeeallpctpkgvvellketgielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpelikae 96 
                    hp+n+grl+++ + l+pctp+g+v+ll++++i++ g ++vv+G+snivg+p+++ Ll +++t+tv+h+ tk+l++++++ad+++vavGkp++i +e
     CTQ26833.1 124 HPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTYGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGE 219
                    89********************************************************************************************** PP

                    GS-TT-EEEE---EEC-TTEEE-SB-HHHHCTTSSEE--TTTSCHHHHHHHHHHHHHHHHHC CS
  THF_DHG_CYH_C  97 mvkegavviDvGinrvekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaakr 158
                    ++kega+v+DvGinr+e+gk+vGDv +e+++e as+itPvpgGVGpmTva+l++ntl+a+++
     CTQ26833.1 220 WIKEGAIVVDVGINRLESGKVVGDVVYEDAAERASYITPVPGGVGPMTVATLIQNTLQACEE 281
                    **********************************************************9886 PP

>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.1   3.3e-44     2e-40       1     116 []       5     121 ..       5     121 .. 0.98

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 3.3e-44
                  E--HHHHHHHHHHHHHHHHHHHHHH.T---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH-TT--EEEE-SS-S CS
  THF_DHG_CYH   1 lldGkalakeireelkeeveklkek.gvkpkLavilvgddpasevYvrnkkkaceevGieseliklpedvseeellklieelneddsvdGilvqlPlp 97 
                  ++dGk++a+++r+e++e+v++  +  +++p+Lav+lvg++pas++Yv +k+kaceevG+ s+ ++lpe++se+ell+li++ln+d+++dGilvqlPlp
   CTQ26833.1   5 IIDGKTIAQQVRSEVAEKVKARVAAgKRAPGLAVVLVGSNPASQIYVGSKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADKTIDGILVQLPLP 102
                  79******************98886588********************************************************************** PP

                  TTS-HHHHHCCS-GGGBTT CS
  THF_DHG_CYH  98 khidekaileaispeKDVD 116
                  + id+ ++le+i+p+KDVD
   CTQ26833.1 103 AGIDNVKVLERIAPDKDVD 121
                  ******************9 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.37   2.2e+03     153     174 ..      71      94 ..      18      96 .. 0.69
   2 ?   10.9   0.0   4.3e-05      0.26      52      87 ..     178     213 ..     154     229 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.37
                     -----TTSHHH..HHHS-S-EEEE CS
  UDPG_MGDP_dh_N 153 PEflregsavk..dllnpdrvviG 174
                     PE   e + ++  d+ln+d+++ G
      CTQ26833.1  71 PETTSEAELLEliDTLNADKTIDG 94 
                     666666665433378888887766 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 4.3e-05
                     HHHHHHHCHTTTEEEES-HHHHHHC-SEEEE----- CS
  UDPG_MGDP_dh_N  52 eelvkkavesgrlsfttdvekaveeadvifiaVgTP 87 
                     e l++ ++++   +ft +++++ve+ad++++aVg P
      CTQ26833.1 178 ELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKP 213
                     4577888889999*********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2230.45
//
Query:       CTQ26834.1  [L=123]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 999.89
//
Query:       CTQ26835.1  [L=404]
Description: Integrase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-29  103.4   0.0    2.1e-29  102.5   0.0    1.4  1  Phage_integrase  Phage integrase family
    1.2e-19   70.4   0.8    2.5e-19   69.4   0.8    1.5  1  Arm-DNA-bind_3   Arm DNA-binding domain
      0.001   19.3   0.0     0.0019   18.4   0.0    1.5  1  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   3.6e-33   2.1e-29       3     170 ..     207     370 ..     205     371 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 3.6e-33
                      HHHHHHHHHHHCCGC.HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTTS CS
  Phage_integrase   3 ltedeverllaalee.slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaekse 95 
                      l  +++  +l al++ s ++ ++++++ll+ tGlR+ El++ +++d+d+++g+++++++++K+++ + vp+s ++ ell+e+ + +     + +
       CTQ26835.1 207 LSVEQIPDFLRALNDySGSVVTRNATRLLMLTGLRTIELRASEWDDIDFDKGIWNIPAERMKMRRPHLVPISTQVRELLEEIHQLT----GRGK 296
                      567899999999999******************************************************************99999....999* PP

                      BSSBET..TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHH.HHHHCCC CS
  Phage_integrase  96 llfask..rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssistt.qiYthva 170
                      ++f+ +  +gkp+s+ ++++++kr+++      ++t+H +Rh+++t L e+g+++  ++  l+H + +++  +Y+h++
       CTQ26835.1 297 YVFPGRndAGKPMSEASINQVIKRIGYD----GKATGHGFRHTMSTILHEQGYNTAWIETQLAHVDKNSIrGTYNHAQ 370
                      ******99******************99....4569**********************************99****86 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.8   4.2e-23   2.5e-19       1      73 [.       3      87 ..       3      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 4.2e-23
  Arm-DNA-bind_3  1 LTdkaikaladsdkklprd.....GLglrvtpsGaktfvlryr.........lGrypavslaeARkkarelraliaqGiDPaeekka 73
                    LT++++++ +++d  +p++     GL+l v+p+G+++++l+yr         lG yp+vsla+AR+k++e+++ +a+G DP +ek++
      CTQ26835.1  3 LTARQVETSKAKD--KPYKlsdggGLYLLVNPNGSRYWRLKYRvagkekslaLGVYPDVSLADARQKRAEAKKVLAAGGDPGQEKQE 87
                    89****9977666..34334569***************************877********************************98 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.2e-07    0.0019       2      50 ..     100     148 ..      99     155 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.2e-07
                      .HHHHHHHHHHHHHHH-HHHHHHHHHHHTTTHHHHTTSSBGGG--HHHH CS
  Phage_int_SAM_3   2 FsefleeWleeykprvkesTyatyksiiknhIlPyFgniklkkItpadi 50 
                      F+ ++ eW e++  +++  +      ++++ I Py+g+  +++I+p d+
       CTQ26835.1 100 FERLALEWHEHKSMNWSAGYASDILEYLRKDIFPYIGSRSITDIKPVDM 148
                      89999*****************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3208.20
//
Query:       CTQ26836.1  [L=122]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.048   13.7   0.1       0.07   13.2   0.1    1.3  1  DUF1655   Protein of unknown function (DUF1655)


Domain annotation for each model (and alignments):
>> DUF1655  Protein of unknown function (DUF1655)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.9e-06      0.07      11      36 ..       4      29 ..       1      44 [. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.9e-06
     DUF1655 11 lmdllkakarhfiklneyvyrlfdGq 36
                + +llka+ + fi l e++ r+   q
  CTQ26836.1  4 IAELLKARKKEFISLREFITRIHLYQ 29
                678*****************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 956.04
//
Query:       CTQ26837.1  [L=152]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.052   13.6   0.1          4    7.5   0.0    2.1  2  DUF1640   Protein of unknown function (DUF1640)


Domain annotation for each model (and alignments):
>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.002        35      70      93 ..      58      81 ..      23      93 .. 0.69
   2 ?    7.5   0.0   0.00022         4       5      23 ..     124     142 ..     121     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.002
     DUF1640 70 ersefaalrseteklqreleklkq 93
                 +++++ lrse   l+++++kl++
  CTQ26837.1 58 SEEDISVLRSEISLLKEKIKKLNS 81
                356666666666666666666665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00022
     DUF1640   5 alvrrLeekGftkeqAeai 23 
                 a++++Le kGf+++qA+ai
  CTQ26837.1 124 AIIQDLEGKGFSNAQAKAI 142
                 6899*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1108.84
//
Query:       CTQ26838.1  [L=65]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-16   59.8   0.3    1.9e-16   59.6   0.3    1.1  1  Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
    7.2e-09   35.7   0.1    8.2e-09   35.5   0.1    1.1  1  HTH_17      Helix-turn-helix domain
  ------ inclusion threshold ------
       0.03   14.6   0.0      0.034   14.5   0.0    1.4  1  HTH_31      Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.3   3.1e-20   1.9e-16       3      51 .]       5      53 ..       3      53 .. 0.98

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 3.1e-20
  Phage_AlpA  3 ilrlreVeqktglsrstiYrlikdgeFPkkvkLGvrsVgWlesEIdeWi 51
                ++r+ eV + tg s++ +Yrl+++++FP ++k+G+rs++++esEId Wi
  CTQ26838.1  5 LIRFSEVQKRTGYSKAWLYRLMSEQRFPAAIKIGSRSIAFIESEIDDWI 53
                79**********************************************8 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.1   1.4e-12   8.2e-09       4      50 ..       8      56 ..       5      57 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 1.4e-12
      HTH_17  4 veEaAelLgvsrstvyrlirrgelpaa.kiGrr.wriprsdleewlekr 50
                 +E+++  g s++ +yrl ++ ++paa kiG r + + +s++++w+++r
  CTQ26838.1  8 FSEVQKRTGYSKAWLYRLMSEQRFPAAiKIGSRsIAFIESEIDDWINQR 56
                58*************************9999888*************97 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   5.7e-06     0.034      16      42 ..       7      32 ..       5      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.7e-06
      HTH_31 16 sqeevAerlgvsestlsrlEqGrrgrp 42
                +  ev +r+g+s+++l rl++ +r  p
  CTQ26838.1  7 RFSEVQKRTGYSKAWLYRLMSEQR-FP 32
                56799***************9888.56 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 529.67
//
Query:       CTQ26839.1  [L=143]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.13   12.6   0.0       0.13   12.6   0.0    1.2  1  RNA_pol_Rpb4  RNA polymerase Rpb4


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb4  RNA polymerase Rpb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.5e-06      0.13      55      94 ..      98     141 ..      21     143 .] 0.67

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.5e-06
                   THHTTSSHHHHHHHHHHHT....TSTSTHHHHHHHHHCSTSSHH CS
  RNA_pol_Rpb4  55 kfsrlkneekfnelvellk....sfeLtkaEklqlvnlkPesav 94 
                    f++  +  k+ ++v+++     +++L k +++ ++nl P+++ 
    CTQ26839.1  98 RFACRGDVLKVIQFVNRMAavnqHYGLSKQDIADILNLYPDNFT 141
                   33333333444455555556666777****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1167.34
//
Query:       CTQ26840.1  [L=269]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-25   87.7   0.0    1.9e-24   86.0   0.0    2.0  2  AntA           AntA/AntB antirepressor
  ------ inclusion threshold ------
       0.12   11.3   0.0        1.1    8.2   0.0    2.0  2  Serpulina_VSP  Serpulina hyodysenteriae variable surface prot


Domain annotation for each model (and alignments):
>> AntA  AntA/AntB antirepressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         2   1.8e+04      29      38 ..      22      31 ..      20      41 .. 0.78
   2 !   86.0   0.0   2.1e-28   1.9e-24       2      68 .]      48     121 ..      47     121 .. 0.84

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2
        AntA 29 fvenkDfisv 38
                 ++++Df+ +
  CTQ26840.1 22 VINGNDFAAI 31
                5789999876 PP

  == domain 2  score: 86.0 bits;  conditional E-value: 2.1e-28
        AntA   2 sAreLhefLevkkdFskWikerikeygfvenkDfisv.......akkkegggrpskdYaltldmAKelaMvern 68 
                 sAr Lh++L+v++dF++Wik ri++ygfv ++D+i+v       +++ +  ++ + dY l+ldmAKe+aMvern
  CTQ26840.1  48 SARALHKALGVGRDFTNWIKGRIDQYGFVAGTDYIRVenlsspkRASAKFRQQIEHDYLLSLDMAKEVAMVERN 121
                 8************************************8876544222222224477*****************8 PP

>> Serpulina_VSP  Serpulina hyodysenteriae variable surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00012       1.1      36      56 ..      64      84 ..      61      94 .. 0.92
   2 ?    0.9   0.0     0.021   1.9e+02     201     264 ..     119     185 ..      98     226 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00012
  Serpulina_VSP 36 NQlRarldqlGfvlGnetikg 56
                   N ++ r+dq Gfv+G++ i++
     CTQ26840.1 64 NWIKGRIDQYGFVAGTDYIRV 84
                   88999**************97 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.021
  Serpulina_VSP 201 tassvgfdlRlyfkaeveevtie.Pflrvaydtalatsigkn..lkvtakkldpieekkggagassy 264
                    +++  g  +R yf++  e +++  P +  +y   l++ ig    +k   + l+++ +++g++++   
     CTQ26840.1 119 ERNEQGRAVRRYFIQCEEALQLSaPEIAAKYRRHLKARIGAAnfFKPMCAALEAARAEMGKETQTRH 185
                    5566677899999999999998449999999999999655321144444444444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2297.81
//
Query:       CTQ26841.1  [L=59]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-24   82.7   0.3    1.1e-23   82.6   0.3    1.0  1  DUF4222   Domain of unknown function (DUF4222)


Domain annotation for each model (and alignments):
>> DUF4222  Domain of unknown function (DUF4222)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.3     6e-28   1.1e-23       2      53 .]       7      58 ..       6      58 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 6e-28
     DUF4222  2 iiqpgdiYrDkrGvvVkvisvdenrVtFrRdGYehpcvaplerFnkeFervk 53
                ++ p++ YrD++G++V v+ v++nrVtF+R+GY++pcv+p+erF+ke+++vk
  CTQ26841.1  7 TPLPNHSYRDAHGQMVSVTAVAHNRVTFYREGYQFPCVQPIERFMKEYTEVK 58
                6889**********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.23s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 534.40
//
Query:       CTQ26842.1  [L=337]
Description: Phage immunity repressor protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-31  109.1   0.4    3.7e-31  107.6   0.1    1.9  2  Phage_ASH  Ash protein family


Domain annotation for each model (and alignments):
>> Phage_ASH  Ash protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.38   6.9e+03      66      90 ..      48      71 ..      46      79 .. 0.78
   2 !  107.6   0.1   2.1e-35   3.7e-31       1      98 [.     120     220 ..     120     228 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.38
   Phage_ASH 66 gpanpvratthkeiavSggsltnkl 90
                ++a+++  +++  +++S  ++++ l
  CTQ26842.1 48 HIATSDGRAAW-DFETSTREFKDTL 71
                78888888899.9999988888765 PP

  == domain 2  score: 107.6 bits;  conditional E-value: 2.1e-35
   Phage_ASH   1 YsekalAKSvagignpeikkatndatplvffvrsalthkefrnkalss.....MVAlagqpsgwPvsavagpanpvratthkeiavSggsltnklkeaa 94 
                 Y  +a AKS agig++ i +at+da p+vff++++lth++f+++++++     MVA+ag++s +Pvs+ ag+anp++att+ ei+vSggs+t++  eaa
  CTQ26842.1 120 YGYSAPAKSGAGIGVLVIRMATHDA-PSVFFCVVSLTHPFFERWDIIQrlaraMVAQAGASSEAPVSIRAGYANPAWATTS-EIGVSGGSVTRYRMEAA 216
                 66689********************.*******************************************************.***************** PP

   Phage_ASH  95 imat 98 
                 ++++
  CTQ26842.1 217 AWLL 220
                 9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2601.61
//
Query:       CTQ26843.1  [L=105]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.021   14.6   0.0      0.021   14.6   0.0    1.1  1  HD_4      HD domain


Domain annotation for each model (and alignments):
>> HD_4  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.2e-06     0.021      53     123 ..      17      87 ..       2     103 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-06
        HD_4  53 a.lsleeirerfGeevarLvegvsklkrlqkvaaadeaeekaeqvenlRkmLlAmveDirvvliklAdrlqt 123
                 + ++le i++r++e+v++L  g+s +  l  +a  +++ ++++    +Rk + Am   +  v++ l d + +
  CTQ26843.1  17 TvDELEGIQNRMDEAVSDLLLGISAIGSLMFWATDNNNYTEETAKGDMRK-IGAMLGTVGEVVLALNDTVAN 87 
                 2356799*************************755555556666667888.667766666677777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 874.18
//
Query:       CTQ26844.1  [L=87]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 671.04
//
Query:       CTQ26845.1  [L=71]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      0.003   17.2   0.0     0.0032   17.1   0.0    1.1  1  CAMP_factor  CAMP factor (Cfa)
  ------ inclusion threshold ------
       0.03   14.5   0.3      0.037   14.2   0.3    1.2  1  Death        Death domain


Domain annotation for each model (and alignments):
>> CAMP_factor  CAMP factor (Cfa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.5e-07    0.0032      57      99 ..      24      67 ..       4      69 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.5e-07
  CAMP_factor 57 akgkv.tlydlksIlaRvellvdivdtiktaattLqdKvqkAhv 99
                  +g+  +  d++ I a + ll d+ +tikta ++L+d v +Ah 
   CTQ26845.1 24 LEGTKaAERDMQLICALISLLQDVPETIKTADEELADYVLRAHR 67
                 4454404579*********************************6 PP

>> Death  Death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   4.1e-06     0.037      31      82 ..       3      51 ..       1      54 [. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-06
                HHHHHHHSSSTHHHHHHHHHHHHHHHHT.TTCSHHHHHHHHHHTTHHHHHHHH CS
       Death 31 eidriekennslrsqsyalLqlWedreg.enatvgtLleaLrklgrddaaekl 82
                +++ i  ++    +q++alL +W + ++  + ++ +L++aL  l +d + e++
  CTQ26845.1  3 DMQLIDAQC--RVEQAQALLSIWLEGTKaAERDM-QLICALISLLQD-VPETI 51
                678888888..88************988444444.999999988665.56666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 528.04
//
Query:       CTQ26846.1  [L=704]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-56  191.6   0.0    3.3e-56  191.0   0.0    1.2  1  DUF927    Domain of unknown function (DUF927)


Domain annotation for each model (and alignments):
>> DUF927  Domain of unknown function (DUF927)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.0   0.0   1.9e-60   3.3e-56       5     285 ..     152     431 ..     148     433 .. 0.89

  Alignments for each domain:
  == domain 1  score: 191.0 bits;  conditional E-value: 1.9e-60
      DUF927   5 keglyvlkkkkdkegkteek..vvicspleisartrdekgeneglllewrdkdgkkkewvmpaellsgdgsellkeLldeGltviskna.rklLakylq 100
                  +g++++++k+dk+  +  +   ++cs le++++ +d  + +  l+l+wr   g k  +v         ++e  + L   G++v+ k+  r+ La++lq
  CTQ26846.1 152 ADGIFWVEPKSDKDTGEITTreSWLCSALEVIGTGIDDSK-TRYLILRWRP-FGSKGDTVQAIPFADIGEREGWRTLKAGGVNVTTKSGlRATLADWLQ 248
                 6899999999988877766678**************9665.5557899987.55555554444444334899***********888888********** PP

      DUF927 101 qlesplpratvvdrlGwhkdedvFvlgdevigesgekeivlqeekaaeeaysekGtldeWrrqiaklvegnpllilavsaAlaapLLkllgaeggglhl 199
                 ++ +  +  +++  +Gw+  +++++++d  i  + ++ ++++ ++ a+++y+++Gt+++Wr+++++l+ gn  ++ +v+aAlaapL+ l+ga+g+g+hl
  CTQ26846.1 249 SC-ANGEVWRIAHATGWQ--CGAYIMPDGEIIGTPDQPVLFNGRSSAASGYTTSGTVESWRESVGRLAFGNYSMMTGVAAALAAPLIGLAGADGFGIHL 344
                 **.***************..*******977766666669999999999*************************************************** PP

      DUF927 200 ygeSstGKttalklAaSvwGnpeelvrswraTanglEglaaannDllLiLDEise.adprevgelvYmlanGqGkqRanrtgevrts 285
                 y +Ss GKtt++++AaS++Gnp+ l  +w +Ta gl + aaa+nD+l++LDEi++ adp ev + +Y+l nG+Gk  ++++g+ r  
  CTQ26846.1 345 YEQSSAGKTTTANVAASLYGNPDVLRLTWYGTALGLANEAAAHNDALMPLDEIGQgADPVEVYKSAYALFNGTGKLQGAKEGGNRDL 431
                 *****************************************************98467888*********************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5227.19
//
Query:       CTQ26847.1  [L=147]
Description: Single-stranded DNA-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-15   56.0   0.0    5.6e-15   55.3   0.0    1.3  1  SSB              Single-strand binding protein family
  ------ inclusion threshold ------
      0.043   12.4   0.1       0.05   12.2   0.1    1.2  1  P22_CoatProtein  P22 coat protein - gene protein 5
      0.047   13.9   0.0      0.073   13.3   0.0    1.3  1  RecJ_OB          RecJ OB domain


Domain annotation for each model (and alignments):
>> SSB  Single-strand binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   9.4e-19   5.6e-15       3     101 ..       4      99 ..       2     102 .. 0.93

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 9.4e-19
                 EEEEEEEESSS-EEEEETTSEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEEHHHHHHHHHH--TT-EEEEEEEEEEEEEECTTSCEEEEEEEEEEEE CS
         SSB   3 kvilvGrlgkdpelrqtesGnavarftlatnrrfkdqegekdeetewhrvvvfgklaevvaeylkkGslvyveGrlqtrkyedqegqkrysteivaeev 101
                 ++   Grl++dp+ r+t +G++++  +la+      +++++ e+t w+ v +fgk+a+ +a+  +kG+lv v G++q ++++ q+g  ++ ++++a++v
  CTQ26847.1   4 QISAYGRLVADPQTRTTGKGTNMTMARLAVALPC--NAADNGEATFWLGVIAFGKQADALAK-HHKGDLVSVAGNMQLNQWTGQDGGMQQGYQVIADSV 99 
                 56778*************************9933..569999******************99.9**********************9*********987 PP

>> P22_CoatProtein  P22 coat protein - gene protein 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   8.4e-06      0.05     261     303 ..      63     105 ..      11     107 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.4e-06
                      .--TT-EEEEEEEEEETTTTT-EEEEEEEEEEEE..ESSSSEE CS
  P22_CoatProtein 261 tlkaGDvlsiagvkainqvtKqalsqlatFtvvadaataatav 303
                         +GD++s+ag   +nq t q+ + ++ ++v+ad +  a +v
       CTQ26847.1  63 KHHKGDLVSVAGNMQLNQWTGQDGGMQQGYQVIADSVLSARTV 105
                      4589*****************************9987776666 PP

>> RecJ_OB  RecJ OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.073      65      99 ..      49      84 ..      17      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
     RecJ_OB 65 leaiaFnlaeklee.lekgdkvdiaytleinefngr 99
                l +iaF+++ ++    +kgd v++a+++++n++ g+
  CTQ26847.1 49 LGVIAFGKQADALAkHHKGDLVSVAGNMQLNQWTGQ 84
                56899*9776655559*****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1300.68
//
Query:       CTQ26848.1  [L=325]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-06   27.9   0.0    3.1e-06   26.8   0.0    1.6  1  HTH_38    Helix-turn-helix domain
     0.0003   20.8   0.0    0.00095   19.3   0.0    1.9  1  HTH_28    Helix-turn-helix domain
     0.0028   17.4   0.0      0.031   14.1   0.0    2.6  3  HTH_23    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   5.3e-10   3.1e-06       4      38 ..       2      36 ..       1      41 [. 0.94

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 5.3e-10
      HTH_38  4 hLsleeReeIerllaeGlslreIArrLgrspsTIs 38
                +L+ e+  eI+rl   G ++r+IA ++g +psT+s
  CTQ26848.1  2 RLTTEQKAEIARLKRSGVGYRTIANKMGLKPSTVS 36
                79********************************9 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.6e-07   0.00095       1      35 [.       7      41 ..       7      42 .. 0.97

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.6e-07
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikr 35
                q++ei +l  +G+ +r +A+++g+ ++tv++ ++r
  CTQ26848.1  7 QKAEIARLKRSGVGYRTIANKMGLKPSTVSSFCQR 41
                8*****************************99997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   5.1e-06     0.031       3      36 ..       4      37 ..       2      44 .. 0.89
   2 ?   -0.3   0.0      0.17     1e+03      13      25 ..     190     204 ..     186     204 .. 0.86
   3 ?   -2.9   0.0       1.1   6.7e+03      30      41 ..     233     244 ..     233     245 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.1e-06
      HTH_23  3 sereRlrillllaeGlsvreIAreLgvsrrTvyr 36
                + +++++i++l + G  +r+IA ++g  ++Tv+ 
  CTQ26848.1  4 TTEQKAEIARLKRSGVGYRTIANKMGLKPSTVSS 37
                6789****************************85 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.17
      HTH_23  13 llae..GlsvreIAr 25 
                 l++e  Gl+++e+A+
  CTQ26848.1 190 LVDEdfGLTREEVAD 204
                 788889*******97 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.1
      HTH_23  30 srrTvyrwlkry 41 
                 s++T++ +++ +
  CTQ26848.1 233 SPHTLSDVVREF 244
                 899**9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2830.65
//
Query:       CTQ26849.1  [L=233]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-25   90.0   0.1    2.5e-25   89.0   0.1    1.5  1  Bro-N     BRO family, N-terminal domain
  ------ inclusion threshold ------
       0.06   13.2   0.1        0.1   12.5   0.1    1.3  1  Dak2      DAK2 domain


Domain annotation for each model (and alignments):
>> Bro-N  BRO family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.1   2.8e-29   2.5e-25       2      95 .]      17     102 ..      16     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 2.8e-29
       Bro-N   2 vrvvtdengepwfvakdvakiLgysnpskaikkhvdkdnkkkleelvstekesgksgqqktvfinesglyeLilrsrkpkakefkkWvteevlp 95 
                 vr+ tde  e+wfvakdva+iLgy+++ +++++++d+d+k+k++ +      +g++++ + ++inesgly+ ++ s+k +ak+fkkWvt+evlp
  CTQ26849.1  17 VRTMTDEYSEVWFVAKDVADILGYAET-SNMTERLDEDEKRKQTLQ------NGRNYT-NQTLINESGLYNAVMGSQKVEAKHFKKWVTSEVLP 102
                 89*************************.7889********888552......233444.479*******************************9 PP

>> Dak2  DAK2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.2e-05       0.1      59     115 ..      76     133 ..      74     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.2e-05
                 HHHHHC.....TT---HHHHHHHHH.HHHHHHH---TTSSSTHHHHHHHHHHHHT... CS
        Dak2  59 alakalkekeeldaedlaaalkaal.eaiqavgkarpgdkTmlDvlrpavealekakd 115
                 +l +a+ ++++++a+++++ + + +  +i++ g+ + +  T  D+lr++++++e+++ 
  CTQ26849.1  76 GLYNAVMGSQKVEAKHFKKWVTSEVlPSIRKTGGYNMVPQTYADALRQLADQAEATER 133
                 67789999999********9999988****************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2036.19
//
Query:       CTQ26850.1  [L=72]
Description: hypothetical protein CH1034_130301 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 573.60
//
Query:       CTQ26851.1  [L=379]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0024   17.8   7.5      0.022   14.7   0.3    3.4  4  DUF2680         Protein of unknown function (DUF2680)
  ------ inclusion threshold ------
      0.038   14.0   0.1        0.4   10.7   0.1    2.4  2  Med10           Transcription factor subunit Med10 of Mediato
      0.047   14.0   3.2        2.2    8.7   1.5    2.8  2  Csm1_N          Csm1 N-terminal domain
       0.11   12.3   3.4          3    7.7   0.1    3.3  4  DivIC           Septum formation initiator
       0.12   12.6   1.5         10    6.4   0.3    2.7  2  Seryl_tRNA_N    Seryl-tRNA synthetase N-terminal domain
       0.27   11.1   2.7       0.53   10.2   2.7    1.5  1  LPAM_2          Prokaryotic lipoprotein-attachment site
       0.39   11.1   4.1        9.1    6.7   0.4    3.1  3  CENP-H          Centromere protein H (CENP-H)
       0.49   10.5   0.1       0.49   10.5   0.1    2.3  2  DUF1090         Protein of unknown function (DUF1090)
        1.2    9.2   4.6        1.6    8.8   0.8    2.5  2  Bap31_Bap29_C   Bap31/Bap29 cytoplasmic coiled-coil domain
        1.3   10.0   4.9        2.5    9.0   0.3    2.5  2  PRKG1_interact  cGMP-dependent protein kinase interacting dom


Domain annotation for each model (and alignments):
>> DUF2680  Protein of unknown function (DUF2680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.3   1.3e-05     0.022       1      33 [.      23      55 ..      23      58 .. 0.91
   2 !    6.0   0.1    0.0067        12       6      22 ..     109     125 ..     108     126 .. 0.93
   3 ?   -2.1   0.1       2.2   3.9e+03      33      40 ..     177     184 ..     169     188 .. 0.68
   4 ?   -3.4   0.0       5.6     1e+04      41      49 ..     209     217 ..     206     223 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.3e-05
     DUF2680  1 LTdeQkkeleaLyqqiaelrKqivdKyVeaGll 33
                LT+eQk+e+++L+ + a+ +++iv+   + G+ 
  CTQ26851.1 23 LTPEQKQEVASLRSELAKAEQEIVEAKSQQGQY 55
                8***********************988877775 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0067
     DUF2680   6 kkeleaLyqqiaelrKq 22 
                 k+e+e+L +qia+ +K+
  CTQ26851.1 109 KTEIETLDTQIADAKKD 125
                 79************995 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.2
     DUF2680  33 lTkeqgek 40 
                 +T+ q++k
  CTQ26851.1 177 ITEKQADK 184
                 66666665 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 5.6
     DUF2680  41 ikkniDkrl 49 
                  kkni+ ++
  CTQ26851.1 209 SKKNIEDMI 217
                 689999886 PP

>> Med10  Transcription factor subunit Med10 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00022       0.4       6      53 ..      83     163 ..      79     177 .. 0.76
   2 ?    0.2   0.0      0.38   6.8e+02      14      51 ..     259     295 ..     253     344 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHHHHS--TT.S-TTHHHHHHHHHHHHHHHHHHHHH...................................H CS
       Med10   6 eviqsllelgvqvsdydenessqevlaqklktlvesLqelsktaskl.................................l 53 
                 + i+s  ++++ vs +++n++   +l+++++tl++++++ +k as+                                  l
  CTQ26851.1  83 NAIESGAKIEISVSGVKPNPEAAAALKTEIETLDTQIADAKKDASQYsggllqalklsaiatqeqtramlqqrylsatygL 163
                 5689999*********************************99999766666666666666655555555555555555555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.38
                 HHHHHHS--TT.S-TTHHHHHHHHHHHHHHHHHHHHH. CS
       Med10  14 lgvqvsdydenessqevlaqklktlvesLqelsktask 51 
                 + +  +d d+  s   +++++ k+l+esL++++ +a++
  CTQ26851.1 259 IRALGKDIDTD-SYGFTIKSRFKDLMESLSSIYGKAKE 295
                 55555566664.66778899999********9998885 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.5    0.0012       2.2      38      65 ..      26      53 ..      21      56 .. 0.89
   2 ?    3.8   0.0      0.04        72      40      58 ..     109     127 ..     102     131 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0012
      Csm1_N 38 tkdqeiesLkeqlaeleekvkeleerrk 65
                 ++qe+ sL+ +la++e+++ e+++++ 
  CTQ26851.1 26 EQKQEVASLRSELAKAEQEIVEAKSQQG 53
                689********************99986 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.04
      Csm1_N  40 dqeiesLkeqlaeleekvk 58 
                 ++eie+L  q+a ++++ +
  CTQ26851.1 109 KTEIETLDTQIADAKKDAS 127
                 4566666666666666554 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0017         3      21      47 ..      26      52 ..      13      58 .. 0.86
   2 ?    3.4   0.0     0.035        63      27      49 ..     106     128 ..     100     132 .. 0.64
   3 ?   -2.9   0.1       3.4   6.2e+03      26      39 ..     142     155 ..     137     160 .. 0.59
   4 ?   -2.3   0.0       2.3     4e+03      10      31 ..     355     376 ..     354     377 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0017
                HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC 21 qlkqeiaalqaelaklkaeneeLeaev 47
                ++kqe+a l  elak  +e+ e +++ 
  CTQ26851.1 26 EQKQEVASLRSELAKAEQEIVEAKSQQ 52
                689999999999999999999988876 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.035
                 HHHHHHHHHHHHHHHHHHHHHCC CS
       DivIC  27 aalqaelaklkaeneeLeaevkd 49 
                 aal+ e+++l  ++++ ++  ++
  CTQ26851.1 106 AALKTEIETLDTQIADAKKDASQ 128
                 56666666666666666665555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.4
                 HHHHHHHHHHHHHH CS
       DivIC  26 iaalqaelaklkae 39 
                 ia+++++ a l+++
  CTQ26851.1 142 IATQEQTRAMLQQR 155
                 44555555555544 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.3
                 XXXXXXXXHHHHHHHHHHHHHH CS
       DivIC  10 ifgkkgllaykqlkqeiaalqa 31 
                 if+ +++++y   ++e++a ++
  CTQ26851.1 355 IFLQYNFNNYDVCEAEVEAAKK 376
                 6889999999999999988775 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.023        42      69     100 ..      24      55 ..      16      64 .. 0.81
   2 ?    6.4   0.3    0.0058        10      60      99 ..      96     135 ..      65     139 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.023
                   TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  69 aeeliaevkelkeelkaleaelkeleaelekl 100
                   + e ++ev++l  el+++e+e  e+++++ ++
    CTQ26851.1  24 TPEQKQEVASLRSELAKAEQEIVEAKSQQGQY 55 
                   56788999999999999999999999887665 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0058
                   CCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  60 gkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99 
                   +  k + e a++l+ e+++l +++++++++ ++ +  l +
    CTQ26851.1  96 SGVKPNPEAAAALKTEIETLDTQIADAKKDASQYSGGLLQ 135
                   556677799*******************999987766655 PP

>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.7    0.0003      0.53       1      15 [.       5      19 ..       5      21 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0003
      LPAM_2  1 lllllallllLaGCG 15
                ll+++ +++lLaGCG
  CTQ26851.1  5 LLACVIATSLLAGCG 19
                799***********9 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.4    0.0051       9.1      18      47 ..      27      56 ..      24      96 .. 0.85
   2 ?   -0.5   0.0       0.9   1.6e+03      14      37 ..     104     127 ..     101     132 .. 0.79
   3 ?    3.9   0.1     0.037        67      13      61 ..     140     188 ..     133     215 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0051
      CENP-H 18 lsqelrelqeeltevekenlrlkrknrela 47
                ++qe+++l++el+++e+e++++k ++ + +
  CTQ26851.1 27 QKQEVASLRSELAKAEQEIVEAKSQQGQYT 56
                789*******************99987765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.9
      CENP-H  14 ellklsqelrelqeeltevekenl 37 
                 ++++l++e+++l  ++++++k++ 
  CTQ26851.1 104 AAAALKTEIETLDTQIADAKKDAS 127
                 567888899999999999888865 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.037
      CENP-H  13 sellklsqelrelqeeltevekenlrlkrknrelaaellelakekesek 61 
                 s+++ ++q  + lq++  +++    ++k  n++  + ++e++ +k++  
  CTQ26851.1 140 SAIATQEQTRAMLQQRYLSATYGLAEVKVPNEQANEAITEKQADKAEPH 188
                 6788899999999*************************88877777654 PP

>> DUF1090  Protein of unknown function (DUF1090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00028      0.49      53      89 ..      16      52 ..      12      80 .. 0.83
   2 ?    0.5   1.5      0.37   6.6e+02      23      93 ..     113     184 ..     100     190 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00028
     DUF1090 53 anCtdeklkaerqekveekeeeVaereaeLaeakekg 89
                a C  ++l  e++++v++ ++e+a+ e+e  eak ++
  CTQ26851.1 16 AGCGPKDLTPEQKQEVASLRSELAKAEQEIVEAKSQQ 52
                56999***************************97665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.37
     DUF1090  23 qaIekqieaAkahgnqkrvagLekaLk..evkanCtdeklkaerqekveekeeeVaereaeLaeakekgdkdk 93 
                 +++ +qi+ Ak+   q    gL +aLk  ++ ++ +   ++++r  +     +eV+  +++ +ea +++++dk
  CTQ26851.1 113 ETLDTQIADAKKDASQY-SGGLLQALKlsAIATQEQTRAMLQQRYLSATYGLAEVKVPNEQANEAITEKQADK 184
                 45667777777665554.4567777641145544444455555555555555566666666666666666665 PP

>> Bap31_Bap29_C  Bap31/Bap29 cytoplasmic coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.8   0.00091       1.6       1      23 [.      29      51 ..      29      56 .. 0.91
   2 ?    1.1   0.2      0.23   4.2e+02       1      17 [.     110     126 ..     110     128 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00091
  Bap31_Bap29_C  1 keiekLkkeLkkkkkDlealKkQ 23
                   +e+++L++eL+k+++++   K+Q
     CTQ26851.1 29 QEVASLRSELAKAEQEIVEAKSQ 51
                   59****************99999 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.23
  Bap31_Bap29_C   1 keiekLkkeLkkkkkDl 17 
                    +eie L ++++ +kkD+
     CTQ26851.1 110 TEIETLDTQIADAKKDA 126
                    59************996 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.3    0.0014       2.5       4      67 ..      22      83 ..      21      93 .. 0.68
   2 ?    2.2   0.5      0.19   3.4e+02      15      66 ..     107     156 ..     101     186 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0014
  PRKG1_interact  4 kLYeeekeenerLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerkis 67
                     L  e+k+e   L++eL ++e+e+ e+ks+  + +       +  ++ le+  +++  le++i 
      CTQ26851.1 22 DLTPEQKQEVASLRSELAKAEQEIVEAKSQQGQYTGG--LIRNLITARLEVLGTNKALLEQRIN 83
                    5667899*********************987776633..2223344445555555555555555 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.19
  PRKG1_interact  15 rLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerki 66 
                      Lk+e+e+l+ +++++k+  ++ +       + + s + ++++ r  l++++
      CTQ26851.1 107 ALKTEIETLDTQIADAKKDASQYSGG--LLQALKLSAIATQEQTRAMLQQRY 156
                     56666666666666666655554422..122333344444555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3024.99
//
Query:       CTQ26852.1  [L=56]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 434.36
//
Query:       CTQ26853.1  [L=108]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 831.54
//
Query:       CTQ26854.1  [L=1021]
Description: Phage tail length tape-measure protein 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-08   33.2  15.6    4.1e-08   33.2  15.6    6.6  7  TMP_2     Prophage tail length tape measure protein
  ------ inclusion threshold ------
        4.4    7.6   6.6         16    5.8   0.4    3.3  3  DUF4611   Domain of unknown function (DUF4611)


Domain annotation for each model (and alignments):
>> TMP_2  Prophage tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   6.2    0.0026        23      98     162 ..      44     109 ..      27     153 .. 0.84
   2 !   33.2  15.6   4.5e-12   4.1e-08       5     136 ..     165     286 ..     161     301 .. 0.89
   3 ?    0.1   0.1     0.061   5.4e+02      12      30 ..     293     311 ..     282     316 .. 0.83
   4 ?   -0.4   7.8     0.085   7.6e+02      74     175 ..     365     474 ..     340     490 .. 0.82
   5 ?   -3.8   3.3      0.97   8.7e+03     127     166 ..     524     563 ..     510     584 .. 0.52
   6 ?   -6.1   3.5         2   1.8e+04      13      47 ..     662     697 ..     646     728 .. 0.63
   7 ?  -11.9  14.7         2   1.8e+04     128     165 ..     809     846 ..     757     876 .. 0.56

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0026
       TMP_2  98 nkaliltGnaaGlTasqLeamaesiaeagg.tqaaaaealaalastGkiggeqlervakaaaelek 162
                    l  +  +aG++ s+L+ +a+s++   +  ++++ +++ a+ ++G  +g + +++++a a le+
  CTQ26854.1  44 FDNLSSSASSAGTSFSELAGYARSMDSSLKtLNSNVNAITRAMQEAGSSAGGAGAEFTRAEAILEN 109
                 4567777889********************56678888899999******9999999998877665 PP

  == domain 2  score: 33.2 bits;  conditional E-value: 4.5e-12
       TMP_2   5 aagksakqlalamrnlpaqftdvatslasGqspltvllqQGgQikdmFGGigpalkalggyvlslisPltlaAaavgalalAyykgakearefnkalil 103
                 + +ks ++ +++m+++++q++d ++++++Gqs l  ++qQG Q+  +FG  g++l a+          + ++ a++g+l++   kg++ +++++ a   
  CTQ26854.1 165 TGAKSHGNWKNTMQQAGYQVQDFVVQVQGGQSALVAFAQQGSQLAGAFGPGGAVLGAV----------IAIGSAVAGTLVASLGKGKDAMEALQDATKT 253
                 5679999*****************************************9999999999..........45679999*********************** PP

       TMP_2 104 tGnaaGlTasqLeamaesiaeaggtqaaaaeal 136
                 +   + ++++ ++a++++ ae++  + ++a+a+
  CTQ26854.1 254 LDDVMTVSSNGVAALSDKYAEMARINLSVATAM 286
                 ********************9998444444444 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.061
       TMP_2  12 qlalamrnlpaqftdvats 30 
                 ++++a+++lp q++dv+t+
  CTQ26854.1 293 EVSNALAKLPSQIKDVTTE 311
                 67899***********997 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.085
       TMP_2  74 tla.AaavgalalAyykgakearefnkaliltGnaaGlTasqLeamaesiaeagg.tqaaaaeala......alastGkiggeqlervakaaaelekat 164
                 tl  A++v a+a  +   +++a  f+k l   +n+a   ++ L a+ + i  +g+ tq+   +++        +as++++++++l+++ +++++l++  
  CTQ26854.1 365 TLSmAGTVDAIAERFGWTSDQAFLFTKKLSEVSNKAAPATDDLIALNNIILSNGSsTQKGSEQTAIysrkmlDMASSAVTAEAKLAQLRAITISLSDSQ 463
                 4556888888888888889999999*****************99999998888886776665543222222289************************9 PP

       TMP_2 165 Gqsvdetakel 175
                  ++++++ +el
  CTQ26854.1 464 AKALQQARQEL 474
                 99999998876 PP

  == domain 5  score: -3.8 bits;  conditional E-value: 0.97
       TMP_2 127 gtqaaaaealaalastGkiggeqlervakaaaelekatGq 166
                 +  ++ ++a ++  s++k +g+q er a++   +++    
  CTQ26854.1 524 EAAKNERNAQSEANSAAKQAGTQAERNARILEGYQQKAAL 563
                 3333334444444444444444444444444444443333 PP

  == domain 6  score: -6.1 bits;  conditional E-value: 2
       TMP_2  13 lalamrnlpaqftdvatslasGq.spltvllqQGgQ 47 
                  + ++++++aq  +  t+ a+Gq  p++ l+ Q +Q
  CTQ26854.1 662 HQVNLAKIRAQQVVSPTQEAQGQiDPVQQLANQHAQ 697
                 444555555555555566666666555555555444 PP

  == domain 7  score: -11.9 bits;  conditional E-value: 2
       TMP_2 128 tqaaaaealaalastGkiggeqlervakaaaelekatG 165
                 t+++aa +++  ++ ++++++   + a+aa+++++ t 
  CTQ26854.1 809 TTQQAAIIATSAVQNAAVATQVGVSTAAAATTTAAWTP 846
                 33333333333333333333222222222222222222 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.5   1.4e+04      35      63 ..     275     303 ..     269     309 .. 0.77
   2 ?    5.8   0.4    0.0018        16      23      72 ..     491     539 ..     477     552 .. 0.74
   3 ?    3.8   0.3    0.0077        69       8      66 ..     554     612 ..     545     633 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.5
     DUF4611  35 vaqlreevsellstlveqeaqddvaaagd 63 
                 +a+++ +v+ +++++ e e ++  a+ ++
  CTQ26854.1 275 MARINLSVATAMKKQAELEVSNALAKLPS 303
                 67888888888888888888888777665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0018
     DUF4611  23 geadrlksllsgvaqlreevsellstlveqeaqddvaaagdeeeegeded 72 
                  +a+r ++l +g +  re     l+t  +qea+ ++a+++ +++++ +  
  CTQ26854.1 491 RDAER-QGLKAGTQAFREYYQVKLQTYKQQEANAEAAKNERNAQSEANSA 539
                 45555.99***********************9887777777666554443 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.0077
     DUF4611   8 rdGqkqrlrvkceapgeadrlksllsgvaqlreevsellstlveqeaqddvaaagdeee 66 
                  +G +q+  ++++  ++ +r + +l++ ++l + +++   ++++  a+ + +aa  +++
  CTQ26854.1 554 LEGYQQKAALSADSTSDLSREQAILAAKQKLINPTPQQVAQVERDAAAAWDKAAALKAQ 612
                 5899*****************************99999987655554444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1021 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2411  (0.134475); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 6519.15
//
Query:       CTQ26855.1  [L=123]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 938.22
//
Query:       CTQ26856.1  [L=297]
Description: SMF family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-61  207.7   0.0    1.5e-61  207.3   0.0    1.1  1  DNA_processg_A  DNA recombination-mediator protein A
    4.2e-06   26.4   0.7    1.4e-05   24.8   0.7    1.7  1  LDcluster4      SLOG cluster4 family
  ------ inclusion threshold ------
       0.17   11.9   0.0       0.25   11.3   0.0    1.2  1  YpsA            YspA SLOG family


Domain annotation for each model (and alignments):
>> DNA_processg_A  DNA recombination-mediator protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.3   0.0   2.5e-65   1.5e-61       5     208 ..      78     286 ..      74     288 .. 0.93

  Alignments for each domain:
  == domain 1  score: 207.3 bits;  conditional E-value: 2.5e-65
  DNA_processg_A   5 agiklltledkeYPeklkeikdpPlvLfvkGnlellekravaiVGtRkaseygkevakklakelaeagitivSGlAlGiDaaahraaleaggktv 99 
                     +++ + +++  eYPekl+++++p  vL+++G ++l+++++va+VG+Rk+se+g + +kkl+k l++ g+tivSGlA G+D++ah++ale gg+t+
      CTQ26856.1  78 ENFGVRVHGAGEYPEKLRDARHPIEVLYYQGWWDLVNTPSVAVVGSRKVSEEGARRTKKLVKCLVKDGFTIVSGLAEGVDTCAHETALEMGGNTI 172
                     677889999**********99999*********************************************************************** PP

  DNA_processg_A 100 avlgtgldkiyPkenrklleeiaeegglllse......yppgtkpkkenFpeRnriiaglseavlvveaaekSGalitaelAlelgrevfavpgd 188
                     av+gt+l++ yPk+n kl+++i e+  ll+s+      + ++ + ++  FpeRn  +++l++a+++vea ++SG+l++a++Al++gr++f+++++
      CTQ26856.1 173 AVIGTPLSHNYPKQNVKLQKKIREN-FLLISQvpfqryLDQDYRSNRIFFPERNVTMSALTKATIIVEASDTSGTLTQARAALAQGRKLFILESC 266
                     **********************955.******55555333455688899********************************************** PP

  DNA_processg_A 189 itskesagtnklikegaklv 208
                     ++++ ++++ k  + ga  v
      CTQ26856.1 267 FQNPSISWPAKYEALGAIRV 286
                     *********99998888776 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.7   2.3e-09   1.4e-05       2     129 ..     116     266 ..     115     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2.3e-09
  LDcluster4   2 lkigVmGsaeteakeealelaeelGrliAkegavlltGgrtGvmeaaskGakeagGltvGilpassekehsnk......................yvdi 78 
                 + ++V+Gs +  ++ee  +++++l ++++k g+++++G  +Gv ++a + a e gG t+ ++    +++  ++                      y+d 
  CTQ26856.1 116 PSVAVVGSRK--VSEEGARRTKKLVKCLVKDGFTIVSGLAEGVDTCAHETALEMGGNTIAVIGTPLSHNYPKQnvklqkkirenfllisqvpfqrYLDQ 212
                 579*******..899999****************************************99986633333333345789999999999999888888888 PP

  LDcluster4  79 iiyTG.lglagRnlilvlssdvviaigg..rsGTlsEialaleegkpvivlkgt 129
                    ++ + +  Rn+++     + i+++   +sGTl+    al +g+++ +l++ 
  CTQ26856.1 213 DYRSNrIFFPERNVTMSALTKATIIVEAsdTSGTLTQARAALAQGRKLFILESC 266
                 88888766677****98877777776652279******************9943 PP

>> YpsA  YspA SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.1e-05      0.25      30     143 ..     135     248 ..     131     260 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.1e-05
                 HHHHHHHTTT--EEEE---TTHHHHHHHHHHTTT.TT-TT-EEEEEESSB-TTTTS-HHHHHHHHHHHHH-SEEEESSSSB---HH.HHHHHHHHHHHH CS
        YpsA  30 kklkelleeglewviisgqlGvelwaaevvleLk.eeypelklavilpFeeqeekwneenqeklekllkqadfvksvskepYesps.qlrnknefllek 126
                 kkl + l ++  +++ + + Gv++ a e++le+  ++   + + +   + +q+ k +++ +e++  + +q+ f  ++ ++ Y+s    + ++n ++   
  CTQ26856.1 135 KKLVKCLVKDGFTIVSGLAEGVDTCAHETALEMGgNTIAVIGTPLSHNYPKQNVKLQKKIRENFLLI-SQVPFQRYLDQD-YRSNRiFFPERNVTMSAL 231
                 5677777777778999******************88899999999999999*999999999999877.*********999.766550566888888888 PP

                 SSEEEEE--TTT--TTH CS
        YpsA 127 tdglllvYDeekegkpk 143
                 t ++++v  +++ g+++
  CTQ26856.1 232 TKATIIVEASDTSGTLT 248
                 88888886666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2333.04
//
Query:       CTQ26857.1  [L=218]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00056   19.4   0.0    0.00086   18.9   0.0    1.3  1  Pribosyltran  Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   4.8e-08   0.00086      58     134 ..     124     207 ..     108     214 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.8e-08
                   EEEEEE-TTT--EE...............EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEEEEEEEE-HHHHHHHH CS
  Pribosyltran  58 vrkvkyrpdgseeaargssdes.......rlledpagkkVliVDDildtGgTllaalelLkekgpeevriavlvdkpateeevd 134
                   vr +  r+ + ++ +r+  +e+       r  +    k ++i DD+l+ G+  +a+   ++ + pe+v++  +v++ a+e e d
    CTQ26857.1 124 VRQRESRAASHNSEVRQTPEEIasnyifeRSQAQSLRKMIVIFDDVLTAGSHYKAMKAVIRTHLPESVIVGLFVARTAREAEID 207
                   4555555555555555555555788999977777777888899*********************************99998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1627.18
//
Query:       CTQ26858.1  [L=158]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0066   16.6   0.1      0.018   15.2   0.0    1.7  1  FANC_SAP  Fanconi anemia-associated nuclease SAP domain


Domain annotation for each model (and alignments):
>> FANC_SAP  Fanconi anemia-associated nuclease SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   9.8e-07     0.018      14      44 ..      28      65 ..      27      71 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.8e-07
    FANC_SAP 14 pELlqaFaavlaaksarKael.leaLr......drsat 44
                pEL+ aF + ++a++  K+++ l+aLr      d  ++
  CTQ26858.1 28 PELQDAFNQAITASGGDKTAWlLDALRsklnkpDSNPQ 65
                9*******************835999966666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1265.89
//
Query:       CTQ26859.1  [L=159]
Description: Phage P1-related protein in restrction modification operon RflB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1246.21
//
Query:       CTQ26860.1  [L=236]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-11   45.0   0.7    2.5e-11   44.2   0.7    1.4  1  DUF3800   Protein of unknown function (DUF3800)


Domain annotation for each model (and alignments):
>> DUF3800  Protein of unknown function (DUF3800)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.7   1.4e-15   2.5e-11       2     119 ..       7     187 ..       6     188 .. 0.64

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1.4e-15
     DUF3800   2 iYiDESGdnklkdgsspyfvlgg..kkieeikkleekikelkkky.....................krlleriakflkkn.......dlik........ 62 
                 +Y+DES +  l++++++ +vlg+  + +++++++ ++++e+kkk+                     + l+++++++   +       d  k        
  CTQ26860.1   7 VYCDESCH--LENDDQKAMVLGAvwCPVSKRQSIANRLREIKKKHglatdfetkwtkvgmskigfyMDLIDYFFDDDDLHfrglvipD--Katldhdsf 101
                 8*****97..*************775444899999***************************97764444443333333244443330..033334455 PP

     DUF3800  63 ...................sdeesdesilivldk.....kkkkekakkeleilld.................esvkfvdSkesrglQlADlvagaifr 119
                                     d  s+++++  +d      +     +k +     +                  +++  +S+e   lQlADl++ga+++
  CTQ26860.1 102 gqshdewyykmyfvmlktiFDPGSQYRVF--IDIkdtlgH-----EKVR-----KlhdvlcnnaydysrktiAHIQRINSHEAEQLQLADLLIGALSY 187
                 55444444555556666553333333333..333223331.....1111.....012233334455777888***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1879.41
//
Query:       CTQ26861.1  [L=28]
Description: hypothetical protein CH1034_140006 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (28 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.38
# Mc/sec: 223.10
//
Query:       CTQ26862.1  [L=133]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-37  127.2   0.0    4.9e-37  127.0   0.0    1.0  1  Transthyretin    HIUase/Transthyretin family
    0.00018   21.5   0.0    0.00022   21.2   0.0    1.2  1  bMG3             Bacterial alpha-2-macroglobulin MG3 domain
     0.0067   16.7   0.0      0.019   15.2   0.0    1.7  1  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
  ------ inclusion threshold ------
      0.039   14.2   0.1       0.06   13.6   0.1    1.3  1  SdrD_B           SdrD B-like domain


Domain annotation for each model (and alignments):
>> Transthyretin  HIUase/Transthyretin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.0   0.0   1.1e-40   4.9e-37       1     110 []      24     132 ..      24     132 .. 0.97

  Alignments for each domain:
  == domain 1  score: 127.0 bits;  conditional E-value: 1.1e-40
                    EEEEEEETTTTEE-TS-EEEEEEECTTSSEEEEEEEEE--TTSCESSSSEEGCGB-SEEEEEEEEHHHHHHHTTS..SESCEEEEEEES.TTSEEE CS
  Transthyretin   1 itthvLdttaGkpaagvevelekleeseeeaellaesttdadGrvkellaekeeleagtyklrfeteeYfekegtesffpevevvfevk.eeehyh 95 
                    +++h+L+ ++G p+ gv++el k++ ++  ++++a+++tdadGr+k+l +++e++e+g+yk++f+t++Yf+++++++ffp+++v f+v+ ++++ h
     CTQ26862.1  24 LSVHILNQQTGLPSPGVQIELDKQQGES--WQHIATGKTDADGRIKSLYPQAENMEPGVYKVTFKTGDYFKSQNMNTFFPVIPVIFNVTkQNQKLH 117
                    799*******************987775..***********************************************************677**** PP

                    EEEEEETTEEEEE-B CS
  Transthyretin  96 vPlllspfgYstYrG 110
                    +Pllls++gYstYrG
     CTQ26862.1 118 IPLLLSQYGYSTYRG 132
                    **************9 PP

>> bMG3  Bacterial alpha-2-macroglobulin MG3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.9e-08   0.00022      14      66 ..      23      75 ..       9     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4.9e-08
        bMG3 14 kllvwvtsLdsgkPvagaeVrlldkkg...evlaegtTDaqGvarfaallargkeg 66
                 l v++ + ++g P +g++++l +++g   + +a+g+TDa+G+++   ++a+   +
  CTQ26862.1 23 TLSVHILNQQTGLPSPGVQIELDKQQGeswQHIATGKTDADGRIKSLYPQAE---N 75
                678999999***************99844457************98888554...3 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.2e-06     0.019       2      57 ..      24      88 ..      23      99 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.2e-06
  CarboxypepD_reg  2 isGrVtda.sgapiagatVtvtnadtgt...vastttdadGaf.....rlrglppgtysvtvsap 57
                     +s ++ ++ +g p +g+++++ ++++++    a+ +tdadG+      + ++++pg y+vt+   
       CTQ26862.1 24 LSVHILNQqTGLPSPGVQIELDKQQGESwqhIATGKTDADGRIkslypQAENMEPGVYKVTFKTG 88
                     6667777559************9877533448*********972222245677779999998544 PP

>> SdrD_B  SdrD B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.3e-05      0.06      25      72 ..      38      93 ..      30      98 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
      SdrD_B 25 sgvtVtLkdakgevv...atttTdasGk....Y.kFtnltpGeYkVeftapagytv 72
                 gv+++L +++ge+    at  Tda+G+    Y + +n++pG YkV+f++ + ++ 
  CTQ26862.1 38 PGVQIELDKQQGESWqhiATGKTDADGRikslYpQAENMEPGVYKVTFKTGDYFKS 93
                59*****9998887632268899999973333446799**********98766644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1050.94
//
Query:       CTQ26863.1  [L=56]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 446.83
//
Query:       CTQ26864.1  [L=434]
Description: citrate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-107  360.2   0.6   1.4e-107  359.9   0.6    1.0  1  Citrate_synt    Citrate synthase, C-terminal domain
  ------ inclusion threshold ------
       0.66   10.3   3.2         16    5.8   0.2    2.5  2  GHMP_kinases_N  GHMP kinases N terminal domain


Domain annotation for each model (and alignments):
>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.9   0.6  1.5e-111  1.4e-107       1     361 []      47     411 ..      47     411 .. 0.94

  Alignments for each domain:
  == domain 1  score: 359.9 bits;  conditional E-value: 1.5e-111
                   GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHHS-HHHHHHHHHHSS---HHHHHHHHHHHHCTTS--HHHHHHHHCSSTTS-HHHHHHHHHHH CS
  Citrate_synt   1 glrgvaaleteisevdgekgelrYRGydieeLaeekssfeevaylLltgelPtkeelkefkeelaearklpekvlealealpkdahpmavlraavsa 97 
                   g+ ++a ++++is +d e++ l++RGy++++La ++++f evay +l+g+ P+++ +++f+e++++++ ++e++ ++   +++d+hpma + a v a
    CTQ26864.1  47 GFANTAGCQSAISWIDTENSVLLHRGYPVDQLA-RQCDFLEVAYIMLNGDAPDEASYQTFRETITRHTLVHEQIARMCSGFRRDSHPMALMCALVGA 142
                   6889************99999************.8************************************************************** PP

                   HHHHSTTCTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS.--.---TTSSHHHHHHHHHHS.....S---HHHHHHHHHHHHHHS--SSSHHH CS
  Citrate_synt  98 lsaddeeseakeeseeaalrdalkliAklptiaaaiyrarlgrepl.epddklsyaenflymlrg.....kkpdeeeaklldlalvlhaDHelnaST 188
                   l+a++++  + e+ +++al  a +l++k+ptiaa+ y+++ ++ p+ +p+++lsya nfl+ml++     +  ++  +++++++lvlhaDH++ aST
    CTQ26864.1 143 LAAFYHDVLDVENLQHRALA-ATRLLSKMPTIAAMSYKYTIEQ-PAaYPRNDLSYAGNFLQMLFAipaekYVLNPVIEQAMNQILVLHADHGQCAST 237
                   ******95555555665666.888*****************97.6659**99***********9888999999************************ PP

                   HHHHHHHTTT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG.GHHHHHHHHHHTTT.S--TTBC-SSSSS--HHHHHHHHHHHHHHTC.HT CS
  Citrate_synt 189 faarvvaStladlysaiaagigalkGplhgganeavlkmleeigsaeveveeylekvlakek.erlpGfGHrvykksDpRakilkelaeelaee.kg 283
                    ++r+++S++a+l++++aag+++l+Gp hggane+ ++mleei+s + +v+++l+++++  +  r  GfG   y++ DpRa il+e  +++ +e + 
    CTQ26864.1 238 TTVRAAGSSGANLFACVAAGLASLWGPMHGGANESSMRMLEEIESVD-QVPAFLRQAKRDPQaFRRLGFGNSRYRHRDPRADILRETSHRVLAEvGM 333
                   *******************************************9999.*********8854369999***********************9999899 PP

                   HHHHHHHHHHHHHHHHHHHHCHHGCT-EB-THHHHHHHHHHTT--GGGHHHHHHHHHHHHHHHHHHHHH.HT------E CS
  Citrate_synt 284 kdpllklaeeleevapevlkekeeknlypNvDfysgvlyralgipeelftvlfaisRvaGwlAhileql.adnkiiRPr 361
                   +d+ll++a++le+va  ++++++  +l p+vDfy++v+++a+++p+++f v+ a++R++Gw+Ah+ e   a   i+RPr
    CTQ26864.1 334 SDRLLQVAMALEDVALTDPYFVD-NGLSPSVDFYTAVILKAMNLPSSMFAVVTAVGRTVGWVAHWNEMHqAPLTIYRPR 411
                   999********************.9******************************************5544477****7 PP

>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.3    0.0048        43      19      38 ..     134     155 ..     134     173 .. 0.70
   2 ?    5.8   0.2    0.0018        16      15      33 ..     244     263 ..     243     291 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0048
                     HHHHHHHHHHHHHTTEHH..HH CS
  GHMP_kinases_N  19 AlavalvaAllallglsl..ee 38 
                     Al +alv Al+a++  +l  e+
      CTQ26864.1 134 ALMCALVGALAAFYHDVLdvEN 155
                     789***********65553333 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0018
                     CHHHH.HHHHHHHHHHHHTT CS
  GHMP_kinases_N  15 GSSAA.lavalvaAllallg 33 
                     GSS+A l ++++a l++l+g
      CTQ26864.1 244 GSSGAnLFACVAAGLASLWG 263
                     56666155666666999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3400.69
//
Query:       CTQ26865.1  [L=290]
Description: Acetyltransferase, GNAT family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-13   48.7   0.0    1.4e-12   47.8   0.0    1.5  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    8.2e-09   35.5   0.0    1.7e-08   34.4   0.0    1.5  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
      7e-08   32.7   0.0    1.3e-07   31.8   0.0    1.5  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.1e-07   31.2   0.0    4.4e-07   30.2   0.0    1.5  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    4.8e-06   26.5   0.0    8.9e-06   25.6   0.0    1.4  1  FR47             FR47-like protein
      0.003   17.2   0.0     0.0042   16.7   0.0    1.2  1  GNAT_acetyltran  GNAT acetyltransferase
  ------ inclusion threshold ------
      0.099   12.8   0.0       0.22   11.7   0.0    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   5.5e-16   1.4e-12      43     126 ..      47     131 ..      15     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 5.5e-16
                     EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHT.T--EEEE--SSHHHHHTTT-E CS
  Acetyltransf_9  43 rvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlaraleemree.gqplsllfPssipiYrrfGye 126
                       +   + +++++ + ++  +l+ +G+  ++ +++ V++ p+hr++g++ +L+++ l+++++e ++ + +  P+ +++Y +fG+ 
      CTQ26865.1  47 IPYAFVERNKVIANASANIIDLRWQGEPRRYIQIGTVMTEPDHRNKGLAGQLIHHILQDWQQEaDAFFLFANPTTVDFYPKFGFT 131
                     345667899****************************************************97444555566699********96 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   6.7e-12   1.7e-08      52     113 ..      72     137 ..      18     140 .. 0.73

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 6.7e-12
  Acetyltransf_10  52 s......hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavgeeq 113
                      +      +i+ ++ +p++r +G++ +L++++++  + ++   ++ + a+p+ v+fY k+GF++ +e q
       CTQ26865.1  72 GeprryiQIGTVMTEPDHRNKGLAGQLIHHILQDWQ-QEAD-AFFLFANPTTVDFYPKFGFTRSEEYQ 137
                      245555599*************************95.5555.8*******************998876 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   5.2e-11   1.3e-07      25     117 .]      34     130 ..      13     130 .. 0.77

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 5.2e-11
                     HHHHHSTTCEEEEEEET.......TEEEEEEEEEEEET....TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHH CS
  Acetyltransf_1  25 eesfsleaegllvaeed.......geliGfisllkipd....ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaa 108
                     ee+      g++   ++       +++i+ +s+++i+     e ++++ i  ++  p++r+kGl+ +L+ ++++   +e +++ +l     n  +
      CTQ26865.1  34 EEW---YQQGYWTDAYIpyafverNKVIANASANIIDLrwqgEPRRYIQIGTVMTEPDHRNKGLAGQLIHHILQDWQQE-ADAFFL---FANPTT 121
                     333...33344442222233443489****************999****************************977777.666788...78**** PP

                     HHHHHHTTE CS
  Acetyltransf_1 109 irlYeklGF 117
                     + +Y k+GF
      CTQ26865.1 122 VDFYPKFGF 130
                     ********9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.7e-10   4.4e-07      12      75 ..      55     131 ..      41     132 .. 0.65

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.7e-10
                     TEEEEEEEEEEES..........TCTEEEEE-GGGTTSSHHHHHHHHTT....SEEEEE..EEEE.THHHHHHHHHHTTEE CS
  Acetyltransf_7  12 gkivGfialslld..........aeitrlaVdpeyrgkGiGraLleaae....kgiile..qlel.naekaikfYeklGFe 75 
                     +k++  +++ ++d           +i+ + + p++r+kG++ +L+ ++     +    e     l +++++++fY k+GF+
      CTQ26865.1  55 NKVIANASANIIDlrwqgeprryIQIGTVMTEPDHRNKGLAGQLIHHILqdwqQ----EadAFFLfANPTTVDFYPKFGFT 131
                     5555555555555666666664344555******************83223211....111112333347899*******8 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.5e-09   8.9e-06      23      85 ..      79     138 ..      70     139 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.5e-09
                 SEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEEEEEEE CS
        FR47  23 elgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfekieetew 85 
                 ++g + ++p+hr++Gl+++l++ + ++  ++ +  +l    +N +   +y k Gf+  ee+ +
  CTQ26865.1  79 QIGTVMTEPDHRNKGLAGQLIHHILQDWQQEADAFFLF---ANPTTVDFYPKFGFTRSEEYQY 138
                 699*****************999999988887777776...577899********99987765 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.6e-06    0.0042     157     241 ..      46     137 ..       3     139 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.6e-06
  GNAT_acetyltran 157 GlGvvilkngeivsgasSys.......vyekgiei.eidTkedyrrkgLAtivaaalileclkrglyPsWDaa....neaSvaLaekLGYefek 238
                       + ++ ++++++++ as+ +         ++ i i  + T++d+r+kgLA  + ++++++  ++      Da     n + v  + k+G+++++
       CTQ26865.1  46 YIPYAFVERNKVIANASANIidlrwqgEPRRYIQIgTVMTEPDHRNKGLAGQLIHHILQDWQQEA-----DAFflfaNPTTVDFYPKFGFTRSE 134
                      5567788889999999998878877555556666634788**********998888777765543.....4444444***************** PP

  GNAT_acetyltran 239 eYk 241
                      eY+
       CTQ26865.1 135 EYQ 137
                      **8 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.4e-05      0.22      20      56 ..      73     109 ..      55     112 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.4e-05
  Acetyltransf_CG  20 rkegvldfthTeVpeelrGkGiAkkLvkaalddaree 56 
                      ++   +++  + +++ +r kG+A++L+ ++l+d ++e
       CTQ26865.1  73 EPRRYIQIGTVMTEPDHRNKGLAGQLIHHILQDWQQE 109
                      5555677888999*******************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2385.92
//
Query:       CTQ26866.1  [L=306]
Description: lauryl-acyl carrier protein (ACP)-dependent acyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.8e-105  351.0   0.0   5.4e-105  350.8   0.0    1.0  1  Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransfera
  ------ inclusion threshold ------
       0.18   12.1   0.2        1.1    9.5   0.1    2.1  2  RcbX             RbcX protein


Domain annotation for each model (and alignments):
>> Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.8   0.0    6e-109  5.4e-105       2     295 .]       5     297 ..       4     297 .. 0.99

  Alignments for each domain:
  == domain 1  score: 350.8 bits;  conditional E-value: 6e-109
  Lip_A_acyltrans   2 kkfkkellhlrywlvwlgiavllllallPesvlrkilkglgrlaakflkrrrkiarkNLalvfpekseaerekiidksfesvgraivetirvaf 95 
                      +kf+++llh+rywl wlgi++l+ll++lP++v+++++++lgrla +++k+r++iar+NL+l+fpe+s+a re+++ k+fes+g+ ++et++++f
       CTQ26866.1   5 PKFSRALLHPRYWLLWLGIGFLWLLVQLPYPVIYRLGTALGRLAMRVMKSRARIARRNLELCFPEMSAADREALLVKNFESLGMGLMETGMAWF 98 
                      79******************************************************************************************** PP

  Lip_A_acyltrans  96 isdeeiakrveviglehikealaeeegvilllpHfanwelaglvlakqypglavvaenkknpllnqliislRerfggkllprknaikelikalr 189
                      ++ +++a+++e  g + + e l+e++g++l+++Hf+++e+++++ ++  pg++v+++n+ npl+++l++++R r+++ +l+rkn +k++++al+
       CTQ26866.1  99 WPTHRVARWTETSGVNEVVELLEEKQGILLIGIHFLTLEMGARMYGMFTPGIGVYRPND-NPLIDWLQTWGRLRSNKTMLDRKN-LKGMVRALK 190
                      ***********************************************************.************************.********* PP

  Lip_A_acyltrans 190 kgevvvllpDqdlgrkdsvfvpfFgepaatttspaklalktk.aavipvaiirkkdgskytvsvhPaldlssteDveqiaqalneilekeitaa 282
                      +ge+ +++pD+d+g+ +svf+p+F++++a+tt+++++++k++ a+++p++++rk++g +y+++   + +  + +++e +a+++n+i+e++i +a
       CTQ26866.1 191 EGEILWYAPDHDYGPASSVFAPLFAVEQAATTTGTWMLAKMSgATIVPFVPRRKPNGMGYELISLTPERTPPLASAEVTAAWMNQIIEQCILMA 284
                      *****************************************99*************************************************** PP

  Lip_A_acyltrans 283 Peqylwlhrrfkt 295
                      Peqy+wlhrrfkt
       CTQ26866.1 285 PEQYMWLHRRFKT 297
                      ************7 PP

>> RcbX  RbcX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00013       1.1      66      92 ..      46      73 ..      37      85 .. 0.89
   2 ?   -0.2   0.0      0.13   1.1e+03      23      43 ..     273     293 ..     266     299 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00013
                HHHHHHHHHHHHHHHHHGGG.HHHHHHH CS
        RcbX 66 eLalRiltvRehlaeevlef.lpelvrk 92
                 La+R+++ R+ +a + le  +pe++ +
  CTQ26866.1 46 RLAMRVMKSRARIARRNLELcFPEMSAA 73
                69*****************989**9865 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHSHHHHHHHHH CS
        RcbX  23 vrvvlaqLsetnpeaaiwLsk 43 
                 ++ +++q   + pe+++wL++
  CTQ26866.1 273 MNQIIEQCILMAPEQYMWLHR 293
                 567888888899999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2636.86
//
Query:       CTQ26867.1  [L=90]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-20   71.7   0.2    5.1e-20   71.2   0.0    1.4  2  DUF1471   Protein of unknown function (DUF1471)
  ------ inclusion threshold ------
       0.14   11.7   0.0       0.18   11.3   0.0    1.1  1  DUF3087   Protein of unknown function (DUF3087)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.4       1.4   1.3e+04      24      33 ..       9      18 ..       7      21 .. 0.60
   2 !   71.2   0.0   5.7e-24   5.1e-20       1      56 []      33      90 .]      33      90 .] 0.95

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.4
                HHHHHHCT-S CS
     DUF1471 24 skkAdekGAk 33
                +  A + GA+
  CTQ26867.1  9 ALSAVAFGAS 18
                5556666665 PP

  == domain 2  score: 71.2 bits;  conditional E-value: 5.7e-24
                EEEEEEEEEC...SS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTT.EEEEEEEEE CS
     DUF1471  1 lqpigtisvs...gvfgspsdledalskkAdekGAkyYrItsarennggn.lhatAelYK 56
                l+++g isv    g+f+spsdl+++lsk AdekG+kyY+It+are  +g+ ++atAe+YK
  CTQ26867.1 33 LTKVGPISVGpsgGEFSSPSDLHEQLSKLADEKGGKYYVITAARE--HGPnFEATAEVYK 90
                79*******************************************..5555********9 PP

>> DUF3087  Protein of unknown function (DUF3087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     2e-05      0.18      21      55 ..       3      37 ..       1      41 [. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2e-05
     DUF3087 21 alvallavlsllfstllialfgeeevsnfhlnllG 55
                +++++la+++++f++ + +l  +eev++f+l  +G
  CTQ26867.1  3 KVIVALALSAVAFGASAAQLITKEEVKHFKLTKVG 37
                6899*************************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 775.24
//
Query:       CTQ26868.1  [L=522]
Description: DNA-binding transcriptional activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-79  264.5   2.2    3.1e-79  263.7   2.2    1.4  1  CadC_C1      CadC C-terminal domain 1
    1.1e-18   67.1   0.1    2.2e-18   66.1   0.1    1.5  1  Trans_reg_C  Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
      0.015   14.8   0.4      0.037   13.5   0.4    1.7  1  Homez        Homeodomain leucine-zipper encoding, Homez


Domain annotation for each model (and alignments):
>> CadC_C1  CadC C-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.7   2.2   5.1e-83   3.1e-79       2     133 ..     202     333 ..     201     334 .. 0.99

  Alignments for each domain:
  == domain 1  score: 263.7 bits;  conditional E-value: 5.1e-83
     CadC_C1   2 rlllnprdidirlengnscsnwssqksyvvGlsellatslntfstflvhdktnyninepsssGktltiefvnqrhyraqqcflsvklvdnadssvmldk 100
                 rlllnprdidi+l+ngnsc+nwssq+sy+vGl++l++tslntfstf+vhdkt+yninepsssGktltiefvnqrhyraqqcf+sv+lvdnadss+mldk
  CTQ26868.1 202 RLLLNPRDIDIHLVNGNSCANWSSQHSYAVGLASLITTSLNTFSTFMVHDKTDYNINEPSSSGKTLTIEFVNQRHYRAQQCFMSVQLVDNADSSTMLDK 300
                 89************************************************************************************************* PP

     CadC_C1 101 ryfitndnqlaiqndlleslskalkqpwparmk 133
                 ryf+tndnql+iqndl++sls+al+qpwparm+
  CTQ26868.1 301 RYFVTNDNQLTIQNDLMNSLSDALAQPWPARMQ 333
                 ********************************8 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.1   3.6e-22   2.2e-18       1      77 []      24     100 ..      24     100 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 3.6e-22
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSS.SSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkp.rlIetvrgvGYrl 77 
                  g++++l p+  +lL +++++pg+v+sr+eL+e+vw ++  v++++v++ is LRk L+d  + + ++I tv+++GY+l
   CTQ26868.1  24 GRQLTLEPRLIDLLVFFARHPGEVLSRDELIENVWTRNV-VTSHVVTQSISELRKSLKDGDDVSlEYIATVPKRGYKL 100
                  57899*********************************9.*******************654448***********97 PP

>> Homez  Homeodomain leucine-zipper encoding, Homez
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   6.2e-06     0.037      14      38 ..     347     371 ..     337     377 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.2e-06
       Homez  14 LekYysqhgllqekDldkLckkskl 38 
                 L  +y++h+ll   D+d L+k+s l
  CTQ26868.1 347 LTYFYQSHQLLMKGDVDSLSKASSL 371
                 77899******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.36
# Mc/sec: 4320.01
//
Query:       CTQ26869.1  [L=444]
Description: putative lysine/cadaverine transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-39  136.2  57.7    2.8e-39  135.1  57.7    1.4  1  AA_permease_2  Amino acid permease
    2.3e-18   66.1  48.1    6.4e-18   64.6  48.2    1.6  1  AA_permease    Amino acid permease
  ------ inclusion threshold ------
      0.061   13.7   0.9      0.061   13.7   0.9    1.9  2  Tmemb_18A      Transmembrane protein 188


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1  57.7   4.7e-43   2.8e-39       1     420 [.       7     418 ..       7     423 .. 0.84

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 4.7e-43
  AA_permease_2   1 lsllsafalvigsvigsgifvkn.laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasi 95 
                    ++l++ +++v g ++gsgi   + ++as g ++ +w+w++++ig +++++vya l+++ p  gG + y+ +++ + ++f ++ ++ +a ++++ +i
     CTQ26869.1   7 IGLFACTGVVAGNMMGSGIALLPaNLASIGGIA-IWGWVISIIGAMSLAYVYARLATKNPQQGGPIAYAGEIS-PAFGFQTGVLYYHANWIGNLAI 100
                    78999**************99997777777755.589999999999************************999.689******************* PP

  AA_permease_2  96 lsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwpgvl 191
                     + a+syl +++ p l +n++++ +  iai+++++++n +g  +++++++i+ +l++ +p+++  ++g+ ++d  + +    +++t+ ++ +  v+
     CTQ26869.1 101 GITAVSYLSTFF-PIL-NNPVPAGIACIAIVWIFTFVNMLGGTWVSRLTTIGLVLVL-IPVVMTAVVGWHWFDVATYQ---ANWNTSSTTDSHAVI 190
                    **********66.988.68999*999*******************************.8*************886665...34666666677779* PP

  AA_permease_2 192 lgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilialsll 285
                     ++l  lw+f+G+esaa+ +  vk+  ++vp+a+++g ++++++y+  + +++g  p +++a ++    ++a+ + +  g+++a +v++++a+++l
     CTQ26869.1 191 KSILLCLWAFVGVESAAVSTGMVKNpkRTVPLATMLGTAMAGIVYIAATQVIAGMYPASQMAASGA---PFAISASTILGGWAAPMVSAFTAFACL 283
                    **********************8887578*********************************8665...79************************* PP

  AA_permease_2 286 gaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphlkr 381
                     ++ ++++ +     ++a+dg +P+++  v+ +g+p  ++ l a+  ++l++l++l +    ++   +s l+  +  +++++++l + +   +l r
     CTQ26869.1 284 TSLGSWMMLVGQAGVRAANDGNFPKVYGEVDNNGIPKKGLLLAAVKMTALMVLITLMN----SAGGKASDLFGELTGIAVLLTMLPYFYSCVDLIR 375
                    *********************************************9999999999877....4445555555555555555555555555555555 PP

  AA_permease_2 382 pgki.lvaiigalfllfllvalffppkgpa...tqssliytii 420
                    +  i + ++++++++++ +v+ f+ + g++      ++i+++i
     CTQ26869.1 376 FEGInIRNFVSLICSVLGCVFCFIALMGASsfeLAGTFIVSLI 418
                    5544344555555555555555544433332335556666644 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6  48.2   1.1e-21   6.4e-18       8     390 ..      18     376 ..       9     427 .. 0.82

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 1.1e-21
  AA_permease   8 ggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGln.ylfswitvlaleltaasiliqfw 104
                  g+++G g+ +  ++ +s +G+  a+ +++++++  +  ++  + +at++p+ gg  +ya + ++p++Gf +G + y  +wi +la+++ta+s+l +f 
   CTQ26869.1  18 GNMMGSGIALLPANLASIGGI--AIWGWVISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAFGFQTGVLyYHANWIGNLAIGITAVSYLSTFF 112
                  556666655555554444555..589********************************976.9***********899********************* PP

  AA_permease 105 elvtdlpkawvt.gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeegafknf 201
                    +  +p   ++  + ++ +++++n++g  +  +  +i +++++i ++ + +vg +  ++ ++ ++    +++ +++      ++          +++
   CTQ26869.1 113 -PILNNPVPAGIaCIAIVWIFTFVNMLGGTWVSRLTTIGLVLVLIPVVMTAVVG-WHWFDVATYQA----NWNTSST------TD---------SHAV 189
                  .66666656666244556699*********************************.45556666666....6666666......34.........4899 PP

  AA_permease 202 isvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinavilta 299
                  i  +  ++ af G e+ a+  g vk+P++++P a++    + +i+Y+ ++ +i  + p +             pf i  +      +ap + a++  a
   CTQ26869.1 190 IKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTAMAGIVYIAATQVIAGMYPASQMAASG------APFAISASTILGGWAAPMVSAFTAFA 281
                  999*******************************************************99944444......5999999999999************* PP

  AA_permease 300 alssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmi.isllalllaslnlaapivfnfllaisaligliv...wlliilsylrf 390
                  +l s+ s ++   ++    a+dg +Pkv + v+ +g P +++ll ++ + +l++l++ +n+a  ++++ +  +++++ l++   +  +++ ++rf
   CTQ26869.1 282 CLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVDNNGIPKKGLLLAAVkMTALMVLITLMNSAGGKASDLFGELTGIAVLLTmlpYFYSCVDLIRF 376
                  ********************************************999345566689999999999999999999998887622244555555544 PP

>> Tmemb_18A  Transmembrane protein 188
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.9     1e-05     0.061      29      98 ..     152     220 ..     141     226 .. 0.85
   2 ?   -3.5   0.1       2.1   1.3e+04      70      80 ..     414     424 ..     398     430 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1e-05
   Tmemb_18A  29 ivlvvvavitavgalkwltdpetsevsllksLlshlvftisvivlilLfllGvhkrvvapsiiarrvrsv 98 
                 +++++ +v+tav +++w+ d  t++++  +s ++++  +i +i+l+l  ++Gv+   v   ++ +  r+v
  CTQ26869.1 152 VLVLIPVVMTAVVGWHWF-DVATYQANWNTSSTTDSHAVIKSILLCLWAFVGVESAAVSTGMVKNPKRTV 220
                 3445668899*******8.677889999999999999*********999*********999999888876 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.1
   Tmemb_18A  70 vivlilLfllG 80 
                 +++li+L+++G
  CTQ26869.1 414 IVSLIILMFYG 424
                 34566676766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.37
# Mc/sec: 3589.26
//
Query:       CTQ26870.1  [L=715]
Description: lysine decarboxylase 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   8.3e-197  654.0   0.1   1.2e-196  653.5   0.1    1.2  1  OKR_DC_1    Orn/Lys/Arg decarboxylase, major domain
    2.4e-46  157.3   1.0    5.8e-46  156.0   0.7    1.9  2  OKR_DC_1_C  Orn/Lys/Arg decarboxylase, C-terminal domain
      2e-28   98.9   0.1      4e-28   97.9   0.1    1.5  1  OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
  ------ inclusion threshold ------
       0.17   12.2   0.1        7.8    6.9   0.0    2.9  2  Ish1        Putative stress-responsive nuclear envelope prote
       0.19   10.6   0.0       0.32    9.9   0.0    1.3  1  DUF89       Protein of unknown function DUF89


Domain annotation for each model (and alignments):
>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  653.5   0.1  3.3e-200  1.2e-196       1     417 []     130     545 ..     130     545 .. 1.00

  Alignments for each domain:
  == domain 1  score: 653.5 bits;  conditional E-value: 3.3e-200
                 -HHHHHHHHHHHH---SSSSSTTTTTCGGGGSHHHHHHHHHH-HHHHHT---TTTGGGBBTTTTBTHHHHHHHHHHHHCT-SEEEEESSHHHHHHHHHH CS
    OKR_DC_1   1 pPlykaLvkyveegkvsfavPGHqgGavfkkePagrlfydffGenllraDlsievveLgdLldheGaikeaqkyaarvfgadksyfvvnGTsssnkvvl 99 
                 pPl+kaL+kyv+egk++f++PGH+gG++f+k+P+g++fydffG n++++D+si+v+eLg+Lldh+G++kea++y+arvf+a++sy+v+nGTs++nk+v 
  CTQ26870.1 130 PPLTKALFKYVREGKYTFCTPGHMGGTAFQKSPVGSIFYDFFGSNTMKSDISISVSELGSLLDHSGPHKEAEEYIARVFNAERSYMVTNGTSTANKIVG 228
                 8************************************************************************************************** PP

                 HHH--TTEEEEEESS--HHHHHHHHHS-EEEEEE--EB-TTS-BE---GGGGSHHHHHHHHHHSTTTGSESEEEEESS-TTSEEE-HHHHHHHHTTSES CS
    OKR_DC_1 100 navltpgdlvlvdRNcHKSiehalvlsgatPvylepernalgiiggidlkefeeetlkekikevpdakaprlavitnsTYdGvlynakeivdkleklsd 198
                 ++++++g++vl+dRNcHKS++h++++s++tP+y++p+rna+gi+ggi+++ef+++t+++++ke+p+a++p++avitnsTYdG+lyn++ i+++l+++s 
  CTQ26870.1 229 MYSAPAGSTVLIDRNCHKSLTHLMMMSDITPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS- 326
                 **************************************************************************************************. PP

                 EEEEE-TT-TTGGGSGGGTTSSSSSSS-BTTBEEEEEEEHCCCCS--TT-EEEEEES-BT--HHHHHHHHHHTS-SS--HHHHHHHHHHHHHHSHHHHH CS
    OKR_DC_1 199 rilfDeAwvgyeqfiplyadaskllaenendpgilvtqSvHKllaalsqaSlihvkeelivneerlneafmmhattSpsYpllAsldvaakmlegesgr 297
                  i+fD+Awv+y++f+p+y++++++++ ++++++i++tqS+HKllaa+sqaS+ihvk++  vnee++nea+mmh+ttSp+Y ++As+++aa+m++g++g+
  CTQ26870.1 327 -IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD--VNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGK 422
                 .*********************************************************..9************************************** PP

                 HHHHHHHHHHHHHHHHHHH...HSSS---EESS-SEEESTSGEEE-TT-TTT--TT--TTSEEE-TTEEEEE-SSB-TTSSB-SS---HHHHHHHHHHT CS
    OKR_DC_1 298 rlleevveraielrkeikr...ldnaelikpvnpevvdekeffklepgekWhgfediadeqyflDPiKlliltPGidedGeleelGvpaaivakyLren 393
                 rl++ ++er i++rkeikr   +++++++++++pe++d++e+++l++++ Whgf++i++e+++lDPiK+++ltPG+++dG+++++G+pa+ivakyL+e+
  CTQ26870.1 423 RLIDGSIERSIKFRKEIKRlkgESDGWFFDVWQPEHIDGPECWPLRSDSAWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMDDFGIPASIVAKYLDEH 521
                 *******************99999*************************************************************************** PP

                 T---SEEESSEEEEE--TTS-HHH CS
    OKR_DC_1 394 givvektdlynilflltlgedktk 417
                 givvekt++yn+lfl+++g+dktk
  CTQ26870.1 522 GIVVEKTGPYNLLFLFSIGIDKTK 545
                 *********************986 PP

>> OKR_DC_1_C  Orn/Lys/Arg decarboxylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.4   1.2e+04       6      32 ..     118     144 ..     117     146 .. 0.84
   2 !  156.0   0.7   1.6e-49   5.8e-46       1     131 [.     570     700 ..     570     701 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.4
                 HHSHHHHTT-BHHHHHHHHHHHHHHHT CS
  OKR_DC_1_C   6 kekperYegmtlrdLcqemhdlykeak 32 
                 k+++++Y ++ l  L ++++++++e k
  CTQ26870.1 118 KQNTDEYIDTILPPLTKALFKYVREGK 144
                 678899999999999999999999865 PP

  == domain 2  score: 156.0 bits;  conditional E-value: 1.6e-49
                 SHHHHHHSHHHHTT-BHHHHHHHHHHHHHHHTHHHHHHHHCCS--EESS-HHHHHHHHHTT-EEEEEGGG-TTSBBSS-BEECTT-S-SB-TTEE--CC CS
  OKR_DC_1_C   1 lPelvkekperYegmtlrdLcqemhdlykeakvaelqkeafsklpepamtpaeayeelvrgevelvpldelegriaaelvlpyPpGipllvpGErlgee 99 
                 lP+l++e+pe Ye+m+++dL+q++h+l++++++ +l+ +af+ lp+++mtp +a+++ ++g++e+v l+e+ gr+ a+++lpyPpG+pl++pGE+++ee
  CTQ26870.1 570 LPSLYREDPEFYENMRIQDLAQNIHKLIEHHNLPDLMFRAFEVLPSMVMTPYAAFQKELHGQTEEVYLEEMVGRVNANMILPYPPGVPLVMPGEMITEE 668
                 8************************************************************************************************** PP

                 CHHHHHHHHHHHHHCCCSTTS--EEETEEE.T CS
  OKR_DC_1_C 100 skaildYlkaleefdnkfPGFeteiqGvevee 131
                 s+++l++l++l+e+ +++PGFet+i+G ++++
  CTQ26870.1 669 SRPVLEFLQMLCEIGAHYPGFETDIHGAYRQA 700
                 ****************************9975 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.1   1.1e-31     4e-28       1     111 []      14     124 ..      14     124 .. 0.99

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 1.1e-31
  OKR_DC_1_N   1 lkgaairelaealekegfevvgvtstdDllsvieqnsriaavvlsvddeaaelldeirernedlPvFllaetrtsedvpadvlreidgfielledtpef 99 
                 +k+++irel++ale+ +f++v++++ dDll++ie+nsr+++v++++d+++ el++ei++ ne +P++++a+t ++ dv++++lr+ + f+e++++ +e+
  CTQ26870.1  14 FKEEPIRELHRALERLDFRIVYPNDRDDLLKLIENNSRLCGVIFDWDKYNLELCEEISKMNEYMPLYAFANTYSTLDVSLNDLRMQVRFFEYALGAAED 112
                 5899*********************************************************************************************** PP

  OKR_DC_1_N 100 iarqieaaakkY 111
                 ia++i++ +++Y
  CTQ26870.1 113 IANKIKQNTDEY 124
                 *********999 PP

>> Ish1  Putative stress-responsive nuclear envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.082   2.9e+02      25      37 .]      37      49 ..      35      49 .. 0.81
   2 ?    6.9   0.0    0.0022       7.8      11      22 ..     516     527 ..     516     530 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.082
        Ish1 25 stRdeLlklardn 37
                 +Rd+Llkl  +n
  CTQ26870.1 37 NDRDDLLKLIENN 49
                68******98665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0022
        Ish1  11 kWLdshGipvsk 22 
                 k+Ld+hGi+v+k
  CTQ26870.1 516 KYLDEHGIVVEK 527
                 7********966 PP

>> DUF89  Protein of unknown function DUF89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0     9e-05      0.32     278     324 ..     359     405 ..     342     417 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 9e-05
                 CCGSSSHHHHHHHHHC-SEEEEEHHHHHHHHTTSCTTTTTSEHHHHT CS
       DUF89 278 ysempeapelyeelekadLvifKGdlNyrkLtgdrkwppttpfttal 324
                 ++e++++++l++++++a+++ +KGd N +++ + +  ++tt+ +  +
  CTQ26870.1 359 IYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGI 405
                 555667899**********************9999998888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 5247.79
//
Query:       CTQ26871.1  [L=491]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-83  280.8  14.8      2e-83  280.4  14.8    1.1  1  PTR2             POT family
      4e-18   65.5  55.2    9.8e-18   64.2  52.4    2.6  1  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.078   12.8   0.1       0.15   11.9   0.1    1.4  1  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP
       0.13   12.1   0.0       0.13   12.1   0.0    3.5  3  DUF4271          Domain of unknown function (DUF4271)
        4.2    7.6   5.6         28    4.9   0.5    3.5  3  DUF872           Eukaryotic protein of unknown function (DUF8


Domain annotation for each model (and alignments):
>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.4  14.8   5.7e-87     2e-83       2     389 ..      76     440 ..      75     450 .. 0.96

  Alignments for each domain:
  == domain 1  score: 280.4 bits;  conditional E-value: 5.7e-87
                 HHHHHHHHHHHHHHHHCCCCTTTTSS--S--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        PTR2   2 ktIllgsiiyaiGhvvlalsaipslksaesagvrvallfigLalIalGtGgiKpnvSafgadqfeekdprersrfFsiFyfsiNvGSLlsliitpylqe 100
                 +++++g++++++Ghvvl+++++++           ++l+++La+I++G+G++K+n+S+++++++  +dpr++++ Fs+ y++ NvGS+ ++i+++++++
  CTQ26871.1  76 TAVIAGALLMTLGHVVLGVESTSA-----------WSLYVALAIIICGYGLFKSNISCLLGELYAHDDPRRDGG-FSLLYAAGNVGSIAAPIACGLAAQ 162
                 5899**************999888...........69*************************************.************************ PP

                 TT-HHHHHHHHHHHHHHHHHHHHCTTTS-EE---.---SHHHHCCCHSHHHHHCCCHHHHHHHHHHHHHSHHHHHH---HHCCHCHHHHHHHHH-HHTH CS
        PTR2 101 nvgyplgFgipavlmiiallvFllGsrlykkkpp.kgnvltkvfkvllvaaknkvkkirssagkkklhwldkakeldkalsileivvegivfnimtkkk 198
                 ++g+++gF++++++m+i+l++Fl Gsr++++++  ++ +l+ v +vl+++ +  v+++ ++ +++ l +++++ +l   l+i +  +++ v++im  k 
  CTQ26871.1 163 WYGWHIGFALAGIGMFIGLMIFLSGSRHFRHTRGvDKPALRAVKFVLPTWGWLLVMLCLAPVFFTLLLQNNWSGYL---LAIVCLFAAQMVARIM-IKA 257
                 *********************************999999**********************************999...889*********9999.999 PP

                 HCHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHH.HTST-BE.SSCB--GGGGHHHHHHHHHHHHHHHHHCTHHHHHHTTSSCCCCHHHHHHHHHHHH CS
        PTR2 199 veevkrllrvvplflpliifwalyaQmgttlvlqa.rtmnrki.gsfeippaqlqvlnailillliPifdklvypllrkltlgltslkkiavGlflasl 295
                  e++++l+++v l+l+ ++fw+l++Q+g++++l++  ++nr++ +   +p+a++q++nai+++ + +++++l+ p ++     l+ + k+ +Gl+l+  
  CTQ26871.1 258 PEHRRALWQIVLLMLAGTLFWVLAQQGGSSISLFIdHFVNRRLlN-WDVPTALFQSVNAIAVMAAGVVLAWLMRPEGSVR-SVLRVWLKFSFGLLLMGG 354
                 *******************************************66.*******************************955.59**************** PP

                 HHHHHHHHHHHHCCHHHT----------TCCCHHHHHHHHHHHHHCCCHHHHHHCTSS-TTTCCCCHHHH.HHHHHHHHHHHHHHHHHHHCCCT. CS
        PTR2 296 afaiaaivelkraktlpelpeaeevqisvlwlipqylligiselfasiggleffykeapksmkslitglf.lltnalgnflssvlatlvakates 389
                 +f+++a+ +++ a  +         q+s+ +++  ++++g++elf+++++++++++++ +++++++tg++ l+t a++n+l++v+a+++++++ s
  CTQ26871.1 355 GFMLLALNARHGAADG---------QASMGMMVAGLAMMGFAELFIDPVAMAQITRLNMPGVTGVLTGIYmLATGAVANWLAGVVAQQTTESQIS 440
                 ****************.........9********************************************999*****************98876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2  52.4   2.7e-21   9.8e-18       9     347 ..      21     421 ..      13     428 .. 0.79

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 2.7e-21
       MFS_1   9 alarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalg.lllllfa.sslwlllvlrvlqGlgagalfp 104
                 +++++   ++l l+l+++lg++ s +  l+++ya +  v+ +++G+l+dr +G r  +++g+ll+ lg ++l++   +s w l+v+ ++   g+g++ +
  CTQ26871.1  21 YFSFYGMRALLILYLTHQLGFDDSHAISLFSAYASLVYVTPILGGWLADRlLGNRTAVIAGALLMTLGhVVLGV-EsTSAWSLYVALAIIICGYGLFKS 118
                 666666666777799***********************************88****************555555.336677899999999999999*** PP

       MFS_1 105 agaaliadwfpk..eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee............. 188
                 ++  l+ +++++  ++r  +++ll+a+ ++G+i +p++ gl a+++gW+  f +++i ++++++  ++l   ++ ++ r  +k+ +             
  CTQ26871.1 119 NISCLLGELYAHddPRRDGGFSLLYAAGNVGSIAAPIACGLAAQWYGWHIGFALAGIGMFIGLM--IFLSGSRHFRHTRGVDKPALravkfvlptwgwl 215
                 ***********9667***********************************************55..488888888888888888878899999999999 PP

       MFS_1 189 ..........................kgtgpaplvp..awkallkdpvlw...illialllfffgfsg.......lltllply.lqevlglsglllagl 248
                                           +  + a++v    +ka  +++ lw   +l++a  lf++   +       ++ ++  +  +  l+++  + ++l
  CTQ26871.1 216 lvmlclapvfftlllqnnwsgyllaiVCLFAAQMVAriMIKAPEHRRALWqivLLMLAGTLFWV---LaqqggssISLFIDHFvNRRLLNWD--VPTAL 309
                 9999999999988877766666666644444444447777777777888985533333333333...2234677766666665346778999..99999 PP

       MFS_1 249 llallalvgailallagrlsdr....lgr.rrrlllallllllaalglallavt........ssavllllvlvliGfglgfvfpsllalasdlappeea 334
                 + ++ a++++++++++++l++      +  r  l ++++lll++  +++l+ ++         s  +++++l+++Gf+  f+ p ++a++++l  p  +
  CTQ26871.1 310 FQSVNAIAVMAAGVVLAWLMRPegsvRSVlRVWLKFSFGLLLMGGGFMLLALNArhgaadgqASMGMMVAGLAMMGFAELFIDPVAMAQITRLNMPGVT 408
                 999999999999********996665333455555555555555555555555599999975555555559999*******************999*** PP

       MFS_1 335 gtasglfntagsl 347
                 g ++g++++a ++
  CTQ26871.1 409 GVLTGIYMLATGA 421
                 ********76654 PP

>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   4.1e-05      0.15      14      90 ..     366     443 ..     354     459 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.1e-05
  CPSase_sm_chain  14 GksfgakeavGEvvfnTgmtGYqeiltDpsYagqilvltypliGn..yGvneedvesekikvaglvvrelseepsnwra 90 
                      G + g ++++G +v   +m+G+ e + Dp    qi  l +p +    +G+    + +   ++ag+v+++++e++ + +a
       CTQ26871.1 366 GAADG-QASMGMMVAGLAMMGFAELFIDPVAMAQITRLNMPGVTGvlTGIYMLATGAVANWLAGVVAQQTTESQISDTA 443
                      44445.677999*****************************8764124667677777899******9999886655444 PP

>> DUF4271  Domain of unknown function (DUF4271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.7e-05      0.13      66     180 ..      84     193 ..      68     197 .. 0.75
   2 ?    1.3   4.0     0.074   2.7e+02     133     172 ..     212     251 ..     202     269 .. 0.63
   3 ?   -1.6   0.1       0.6   2.2e+03      77      77 ..     288     288 ..     257     364 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.7e-05
     DUF4271  66 lylllsefgslfgsylassllllliiflilllylllKlllykllgwlFfdkkkirqwifsylsylsllglllfplvlllvyfplssqillililiilll 164
                 l+ l +    ++++   s + l+  +++i+++y l+K  +  llg l+  ++  r   fs+l      g +  p++  l+   +++ + + ++l+ +++
  CTQ26871.1  84 LMTLGHVVLGVEST---SAWSLYVALAIIICGYGLFKSNISCLLGELYAHDDPRRDGGFSLLYAAGNVGSIAAPIACGLAA--QWYGWHIGFALAGIGM 177
                 33333333334444...9***************************************************999999887765..5555555555554444 PP

     DUF4271 165 iklllllyksirifkr 180
                 +  l++++++ r+f +
  CTQ26871.1 178 FIGLMIFLSGSRHFRH 193
                 4445547777777766 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.074
     DUF4271 133 lglllfplvlllvyfplssqillililiilllikllllly 172
                 +g ll++l+l+ v+f l +q+ +  +l+ ++++++++++ 
  CTQ26871.1 212 WGWLLVMLCLAPVFFTLLLQNNWSGYLLAIVCLFAAQMVA 251
                 6667777777777777776666655555555555444333 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.6
     DUF4271  77 f 77 
                  
  CTQ26871.1 288 I 288
                 2 PP

>> DUF872  Eukaryotic protein of unknown function (DUF872)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.027        95      33      62 ..      65      94 ..      38     107 .. 0.75
   2 ?   -2.4   0.1       1.5   5.3e+03      80      93 ..     177     190 ..     166     195 .. 0.72
   3 ?    4.9   0.5    0.0079        28      38      86 ..     334     383 ..     307     395 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.027
      DUF872 33 wlkhPkvkknrkvvlaallLlllGlvLlll 62
                ++   ++  nr +v+a  lL++lG v+l +
  CTQ26871.1 65 GWLADRLLGNRTAVIAGALLMTLGHVVLGV 94
                5566677889999***********998755 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.5
      DUF872  80 lvlGlllfiPGvYh 93 
                 +++Gl++f+ G  h
  CTQ26871.1 177 MFIGLMIFLSGSRH 190
                 67888888888766 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0079
      DUF872  38 kvkknrkvvl.aallLlllGlvLlllgvvilvepseGvssavflvlGlll 86 
                  v++  +v l  ++ Lll+G   +ll++    +  +G+ s+  +v+Gl +
  CTQ26871.1 334 SVRSVLRVWLkFSFGLLLMGGGFMLLALNARHGAADGQASMGMMVAGLAM 383
                 467777775525899********************************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       953  (0.0531541); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 3633.26
//
Query:       CTQ26872.1  [L=63]
Description: hypothetical protein CH1034_140017 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.22s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 566.72
//
Query:       CTQ26873.1  [L=505]
Description: lysine tRNA synthetase, inducible [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-84  282.1   0.5    6.5e-84  281.7   0.5    1.2  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    1.4e-15   57.0   0.0    2.5e-15   56.2   0.0    1.4  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    5.4e-05   22.8   2.0        0.1   12.1   0.1    3.0  3  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.7   0.5   1.1e-87   6.5e-84       1     313 [.     162     501 ..     162     502 .. 0.91

  Alignments for each domain:
  == domain 1  score: 281.7 bits;  conditional E-value: 1.1e-87
                  .CCHHHHTHHHHC.CSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEE CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   1 seelrlknryldl.rtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqi 97 
                  ++e+r+++ryldl  +e+ ++++r+rs++++ +r+++  +gf+e+etP+++   +++ ar+F +++++ + +++ L+++p+lyl++l+v+g++rvf+i
   CTQ26873.1 162 DQEVRYRQRYLDLiANEESRHTFRIRSQILATMRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMY-LRIAPELYLKRLVVGGFERVFEI 258
                  589**********9*******************************************************88999.*********************** PP

                  EEEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS..-SS--HHH.H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx.x RF
  tRNA-synt_2  98 araFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaieklnei..gkdldkad.e 192
                  +r+FR+E ++ ++++ EFt++e++m++++++d+++++e l+++l+++v  ++++  + ++     d+ kpf++lt++eai+k + +    dld+ d  
   CTQ26873.1 259 NRNFRNEGISVRHNP-EFTMMELYMAYADYKDLIELTESLFRTLAQTV-LGKTEVPYGDQ---VFDFGKPFEKLTMREAIKKHRPEtnMADLDNFDaA 351
                  ***************.********************************.55544444444...45*****************8766553444443313 PP

                  HHHHH.........................HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCHH.. CS
                  xxxxx.........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  tRNA-synt_2 193 ralvk.........................keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeeleeklkskgld.. 263
                  +al +                          +  +p+f+t++Pae++p+++r++ + +++t++++++i g E+++G ++++d e + ++++++     
   CTQ26873.1 352 KALAEsigiqvekswglgrivteifdevaeAHLIQPTFITEYPAEVSPLARRNDVN-PEITDRFEFFIGGREIGNGFSELNDAEDQAQRFQDQVNAka 448
                  44444778888888888888888999888888899****************99999.9**********************************988889 PP

                  ...SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 264 ...eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                     +ea+  +++y++aleyG+pp++Glg+G+dR+vml+++s+ Irdvi+FP +
   CTQ26873.1 449 agdDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAM 501
                  9999***********************************************86 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   4.2e-19   2.5e-15       1      76 []      68     146 ..      68     146 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 4.2e-19
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET.....HHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr.....eeatklaenlkeGdvvrvtGrvkrrpggelelkveeiell 76 
                      V vaGr +++  r +gk++f++l+D  griq+++ r     + + +++++++ Gd++ ++G+++++++gel+++++e++ll
       CTQ26873.1  68 VAVAGRMMTR--RVMGKASFVTLQDVGGRIQLYVARddlpeGVYNEQFKKWDLGDIIAARGKLFKTQTGELSIHCTELRLL 146
                      789*******..*****************************************************************9986 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.21   1.2e+03      14      42 ..     182     210 ..     172     213 .. 0.79
   2 !   12.1   0.1   1.7e-05       0.1     103     171 ..     254     323 ..     251     338 .. 0.73
   3 !    8.7   0.0   0.00019       1.1     211     234 ..     472     495 ..     460     498 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.21
                   SB-SHHHHHHHHHHHHHHCTTCEESSTTS CS
  tRNA-synt_2d  14 gklhpltkvleeikeiflelgfeevegpe 42 
                    + ++ +++l  +++++++ gf eve p 
    CTQ26873.1 182 HTFRIRSQILATMRQFMVARGFMEVETPM 210
                   455667899999************99886 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.7e-05
                   EEEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--HHHHHH....HHHHHHHHHCTSTEEEEEEECEETTEEE CS
  tRNA-synt_2d 103 kiisigrvfRrdavDathlaeFhqveglvvdenvsladlkg....vleellkklfgaevkvrfrpsyfpfteP 171
                   +++ i+r fR++ +  +h +eF+ +e  ++  ++  +dl+     ++++l++ + g++ +v +  + f f +P
    CTQ26873.1 254 RVFEINRNFRNEGISVRHNPEFTMMELYMAYADY--KDLIEltesLFRTLAQTVLGKT-EVPYGDQVFDFGKP 323
                   799***********************98876554..4444400014455555566665.77777777777666 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00019
                   EEEEEEEHHHHHHHHHT-SSGHHH CS
  tRNA-synt_2d 211 gfafGlGveRlamlkygieDiRel 234
                    +++G+G++R+ ml ++ + iR++
    CTQ26873.1 472 TAGLGIGIDRMVMLFTNSHTIRDV 495
                   5689******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.36
# Mc/sec: 4183.43
//
Query:       CTQ26874.1  [L=141]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.075   13.0   0.9       0.38   10.8   0.1    2.3  2  DPPIV_rep  Dipeptidyl peptidase IV (DPP IV) low complexity re
       0.14   12.0   0.0       0.24   11.3   0.0    1.3  1  Carot_N    Orange carotenoid protein, N-terminal


Domain annotation for each model (and alignments):
>> DPPIV_rep  Dipeptidyl peptidase IV (DPP IV) low complexity region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1     0.089     8e+02      15      20 ..     110     115 ..     110     115 .. 0.93
   2 ?   10.8   0.1   4.2e-05      0.38       5      14 ..     117     126 ..     116     126 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.089
   DPPIV_rep  15 tfrYKs 20 
                 tfr+Ks
  CTQ26874.1 110 TFRVKS 115
                 9****8 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 4.2e-05
   DPPIV_rep   5 tfTLeDYlNn 14 
                 +fTL+D++N+
  CTQ26874.1 117 AFTLNDAFNG 126
                 7********7 PP

>> Carot_N  Orange carotenoid protein, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.7e-05      0.24      28      61 ..      72     105 ..      69     119 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.7e-05
                 HHHHHCCTTT-------HHHHCCCHHHHHHHHCS CS
     Carot_N  28 wfvYtemGksitpAapgaaelelaekllnqikql 61 
                 w+vYte G++i+  +++a +++   +l+++ k+ 
  CTQ26874.1  72 WYVYTEYGDKIDEITVTAKTVKTHGHLVEEAKAS 105
                 *********************9999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1266.22
//
Query:       CTQ26875.1  [L=306]
Description: Rhizopine catabolism protein MocC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-22   78.1   0.1    7.7e-22   77.8   0.1    1.1  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.1   4.3e-26   7.7e-22       1     210 []      33     249 ..      33     249 .. 0.88

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 4.3e-26
                   HHHHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCC.... CS
  AP_endonuc_2   1 laaaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlhpGt.... 93 
                   l++a+eaG++g+El  + ++++s        +l  +l++++lr+as  +++   +  +   ea+    ++a++++++l ++LGa+++v +       
    CTQ26875.1  33 LREAREAGYQGIELGRKFPRQAS--------TLGPLLAAADLRLASGWYSGMLADRSV---EAE----LEAVREHAQLLRQLGAKVMVYG--Ecgql 112
                   689*******************6........9***********888887777777444...677....********************99..54578 PP

                   ........GBCTTTSGHHHHHHHHHHHHHHHHHHHH.HHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHG CS
  AP_endonuc_2  94 ........agagpkgseeeawerlaeslneladyae.kegvklalEtlagsgvelgdeelarlldavdspnvgvclDtgHlliaeedvddalralad 181
                             ++++   ++ ++ +  +ln  ad +  +++ +la++ + +  ve   +el+r+l+ +  +nvg+++DtgH++ a+  + ++l +++ 
    CTQ26875.1 113 pgetpldePISLSPPLSRVSLAAYCHKLNTFADLLLrDYDLQLAYHHHLMMLVEHD-DELERFLSHTH-DNVGLAFDTGHAFVAGVEIPRVLHKYGH 207
                   888887776677777777***************9877****************999.**********7.69************************** PP

                   GEEEEEE.EESS.............TTTTSSTTEESTTSSSS CS
  AP_endonuc_2 182 rikhvHikDakg.............dlgagrdrhvpigeGei 210
                   ri+h+H+kD++               ++ + + +  +g+G+i
    CTQ26875.1 208 RIRHLHLKDVRPqvlgrlyrenlsfNEAVRAGLFTIPGDGCI 249
                   ***********9888888877777777777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2335.28
//
Query:       CTQ26876.1  [L=390]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-29  102.5   0.1    4.4e-29  101.8   0.1    1.4  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
      6e-09   35.9   0.0    1.2e-08   35.0   0.0    1.6  1  GFO_IDH_MocA_C   Oxidoreductase family, C-terminal alpha/beta
    1.4e-07   32.2   0.1    2.4e-07   31.4   0.1    1.3  1  NAD_binding_3    Homoserine dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
       0.11   12.7   0.5       0.89    9.8   0.5    2.2  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.14   10.4   0.0       0.19   10.0   0.0    1.1  1  PTPS_related     6-pyruvoyl-tetrahydropterin synthase related


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.1   1.2e-32   4.4e-29       1     120 []       5     132 ..       5     132 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 1.2e-32
                   EEEEEETTSHHHHHHHHHHHHTTTTE.......EEEEEECSSHHHHHHHHHHTTHE.EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EE CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrle.......evvalldpdaeraeavaesfgve.aysdleelladpeidavivatpngtheelakaaleagkhv 89 
                   l++++iG+G++g+ h+ +++++  ++       ++ al d+d++ ae+ a+++g+e ay d++el++dp++d+v +++pn++h+ +a+aa++agkhv
    CTQ26876.1   5 LNIGLIGSGFMGQAHADAYRRAAMFYpdlpkrpHLYALADQDQAMAERHAAKLGAEkAYGDWRELVNDPQVDVVDITSPNHLHYTMAMAAIAAGKHV 101
                   689*******************9888*********************************************************************** PP

                   EEESSS-SSHHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  90 llEKPlattveeakelvelaekkgklvsvgy 120
                    +EKPla + ++a+e++++a+++g++ +v++
    CTQ26876.1 102 YCEKPLAVNEQQAQEMAQAARRAGVKTMVAF 132
                   **************************99975 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   3.3e-12   1.2e-08       1      74 [.     144     220 ..     144     270 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 3.3e-12
                     HHHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSH..HCSTSHHHHTCHHHHHHHHHHHTSEEEEEE.EEE.SEEE CS
  GFO_IDH_MocA_C   1 KelIengklGevvsvdvwtldtragaeakkrwkrrk..kksgGvlgdlgiHdiDllqwLfGqppsvva.algrmrqn 74 
                     K  I+ g +Ge+v + +++++ ++++++ ++++r     +++G+lgdlg H++ ++q+L+G   +v+a a + +rq 
      CTQ26876.1 144 KQIIARGDIGEPVRFRGTFDQGFYNDPNLPWSWRCSktLGGSGALGDLGAHTLSVAQFLLGGIREVTAsAQTCLRQR 220
                     677999*****************99999665554335**************************99999533333444 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   6.6e-11   2.4e-07       3     116 ..       8     130 ..       7     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 6.6e-11
                    SHHHHHHHHHHHH---S..........SEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHTT.HHHHHHTTEEEE CS
  NAD_binding_3   3 GaiGsavleqlkrqqse..........ielelvavadrdsllskdrkallasealtldlddliahldpdvvVEcasseavael.vlkaLkagkdvv 87 
                    G iGs+++ q  +++ +           +  l+a+ad+d++ +++ +a+l++e+ + d+ +l++++++d vV+ +s++ ++ + + +a++agk+v 
     CTQ26876.1   8 GLIGSGFMGQAHADAYRraamfypdlpKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVD-VVDITSPNHLHYTmAMAAIAAGKHVY 102
                    8999999999999998899999999999999********99999999*****************77777.68********976156899*****97 PP

                    -S--CGGG-HHHHHHHTSSSTTS--.EE- CS
  NAD_binding_3  88 tankgaladealyeeLreaaeangakiyv 116
                         a+  e++ +e+++aa+++g+k +v
     CTQ26876.1 103 CEKPLAVN-EQQAQEMAQAARRAGVKTMV 130
                    66555555.999************99765 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.5   0.00025      0.89       1     127 [.       7     126 ..       7     129 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00025
                      EEEE--SHHHHHHHHHHHCTCCT-G.......EEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS..SEEEE-SSGGGHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvda.......eitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg..dlvvnlsppissldv 85 
                      + +iG+G++Gqa a+ + r   + +         ++ad++++ +e+        ++ a++     y +   +l+++   d+v   sp++++ ++
       CTQ26876.1   7 IGLIGSGFMGQAHADAYRRAAMFYPdlpkrphLYALADQDQAMAERH-----AAKLGAEK----AYGD-WRELVNDPqvDVVDITSPNHLHYTM 90 
                      56788888888888888888877544544322222333333332222.....22333333....3334.55566655435555567888***** PP

                      HHHHHHHT-EEEE...SS-BCGCCSCHCCSHHHHHTHHHHHHCTS CS
  Sacchrp_dh_NADP  86 lkaCietgvhyvd...tsiskeertnyalreavlklkekakeagv 127
                      + a+i++g h+ +    ++          ++++ +++++a++agv
       CTQ26876.1  91 AMAAIAAGKHVYCekpLAV---------NEQQAQEMAQAARRAGV 126
                      **********999888555.........47777777777777776 PP

>> PTPS_related  6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   5.4e-05      0.19     488     560 ..      94     168 ..      69     181 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 5.4e-05
  PTPS_related 488 elkkvelvylsgpsvkdsakaeklvlklarsGgtvvvdmlrv..pqrrvarageflGvigeaesiasklqtlsfe 560
                   ++   + vy  +p   ++++a++++    r+G++++v  +++  p+  +a++  + G ige+++++ ++++++++
    CTQ26876.1  94 AIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMVAFNNIktPAALLAKQIIARGDIGEPVRFRGTFDQGFYN 168
                   55566889*******************************9983345679*********************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2761.79
//
Query:       CTQ26877.1  [L=343]
Description: Oxidoreductase family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-27   96.4   0.0    2.8e-27   95.9   0.0    1.3  1  GFO_IDH_MocA   Oxidoreductase family, NAD-binding Rossmann fo
    0.00016   22.3   0.0    0.00023   21.8   0.0    1.3  1  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
     0.0017   18.5   0.0     0.0026   17.8   0.0    1.3  1  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.012   16.2   0.0      0.021   15.4   0.0    1.4  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
       0.12   13.0   0.0        0.2   12.3   0.0    1.4  1  G6PD_N         Glucose-6-phosphate dehydrogenase, NAD binding
       0.16   11.3   0.0       0.25   10.7   0.0    1.2  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   9.5e-31   2.8e-27       1     115 [.      20     134 ..      20     139 .. 0.96

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 9.5e-31
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE.EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS- CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve.aysdleelladpeidavivatpngtheelakaaleagkhvllEKPla 96 
                   lr++iiG G+i+++++ +l+   ++++vva+ ++++++a++va+++g++ ay ++ee+la p+idav++atp ++h+   ++al+agkhvl+EKP+a
    CTQ26877.1  20 LRWGIIGPGWIAERFVHSLKTY-SRQQVVAVASRSQAKADRVAAEWGIPqAYGQVEEMLARPDIDAVYIATPHNHHFPDGMQALKAGKHVLIEKPFA 115
                   699*************888888.99************************************************************************ PP

                   SSHHHHHHHHHHHHHHTS- CS
  GFO_IDH_MocA  97 ttveeakelvelaekkgkl 115
                   +++ e +el++ a+++gkl
    CTQ26877.1 116 LNLGEGRELQAEAARQGKL 134
                   ****************986 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   7.8e-08   0.00023       1     112 [.      26     133 ..      26     137 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 7.8e-08
                    --SHHHHHHHHHHHH---SSEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGGG- CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqseielelvavadrdsllskdrkallasealtldlddliahldpdvvVEcasseavaelvlkaLkagkdvvtankgalad 96 
                    G G i+++++  lk   ++   ++vava r+++++++ +a+ +  + + ++++++a++d+d v  +++++       +aLkagk+v++    al  
     CTQ26877.1  26 GPGWIAERFVHSLKTYSRQ---QVVAVASRSQAKADRVAAEWGIPQAYGQVEEMLARPDIDAVYIATPHNHHFPDGMQALKAGKHVLIEKPFALN- 117
                    89***************87...*********8888889******************9**9999999**********************9998888. PP

                    HHHHHHHTSSSTTS-- CS
  NAD_binding_3  97 ealyeeLreaaeanga 112
                    ++ ++eL ++a ++g+
     CTQ26877.1 118 LGEGRELQAEAARQGK 133
                    9999999998888775 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   8.5e-07    0.0026      16      88 ..      23      94 ..      13     133 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 8.5e-07
                  EEES-SHHHHHHHHHHHCC.T-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS- CS
  Shikimate_DH 16 lliGaGemaelvakhLlak.gvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisataseep 88
                   +iG G +ae+ ++ L +  + + v+va R++++a+++a e  g    + ++ee+ +   ++d v +at ++++
    CTQ26877.1 23 GIIGPGWIAERFVHSLKTYsRQQVVAVASRSQAKADRVAAEW-GIPQAYGQVEEMLA-RPDIDAVYIATPHNHH 94
                  69**************9873666788****************.56455666666653.3566778888877665 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0     7e-06     0.021       3      73 ..      23      93 ..      21     111 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7e-06
                   EEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHH..H-SEEEE-S-HHH CS
  F420_oxidored  3 giiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaae..eadvvvlavkped 73
                   giiG G ++e +++ l +     +++v ++sr++ ka+  a+e g+    ++ ee+++  + d v +a + ++
     CTQ26877.1 23 GIIGPGWIAERFVHSLKTYS--RQQVVAVASRSQAKADRVAAEWGIPQAYGQVEEMLArpDIDAVYIATPHNH 93
                   9*************999998..78888788***************5555558888888344445555555433 PP

>> G6PD_N  Glucose-6-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.7e-05       0.2      78     154 ..      60     128 ..      29     133 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.7e-05
      G6PD_N  78 vsgdleeeeeyekLkekleeleanrlfYlavpps.lfeevaeklkkaglakeeewkrvvvEKPfGkdlesarelneel 154
                 v+ +   +++y +++e+l++  +  ++Y+a+p++  f + +++lk++        k v +EKPf  +l   rel++e 
  CTQ26877.1  60 VAAEWGIPQAYGQVEEMLAR-PDIDAVYIATPHNhHFPDGMQALKAG--------KHVLIEKPFALNLGEGRELQAEA 128
                 44555556678888888887.789999****9863689999999986........68***********9999999875 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.2e-05      0.25      34     107 ..      17      94 ..       7     110 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.2e-05
                   GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHH..CHHHHTC..EECSHHHHHHH-SEEEE-S--STTTTT CS
  2-Hacid_dh_C  34 lsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkee..eeeelgv..elvsleellaesDivslhlpltpetrh 107
                   +   ++GiiG G I++++ + lk     +v+a+  + ++++   ++e g+   + ++ee+la+ Di  + +  tp+++h
    CTQ26877.1  17 IPILRWGIIGPGWIAERFVHSLKTYSRqQVVAVASRSQAKAdrVAAEWGIpqAYGQVEEMLARPDIDAVYIA-TPHNHH 94 
                   555689*****************766537777666655444565666666535669*****99887444433.555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2563.86
//
Query:       CTQ26878.1  [L=80]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 602.93
//
Query:       CTQ26879.1  [L=335]
Description: putative oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-21   77.8   0.3      2e-21   77.0   0.3    1.4  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
    1.2e-07   31.7   0.0    2.3e-07   30.8   0.0    1.5  1  GFO_IDH_MocA_C   Oxidoreductase family, C-terminal alpha/beta
    1.7e-05   25.3   1.1    3.9e-05   24.2   1.1    1.6  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    3.1e-05   24.2   0.2    6.7e-05   23.2   0.2    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0025   18.3   0.1     0.0045   17.4   0.1    1.4  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
     0.0028   17.7   0.1     0.0059   16.7   0.1    1.6  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.025   14.4   0.1       0.05   13.5   0.1    1.5  1  DAO_C            C-terminal domain of alpha-glycerophosphate 
      0.048   13.3   0.2       0.13   11.9   0.1    1.8  2  ApbA             Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.3   9.1e-25     2e-21       2     120 .]       5     121 ..       4     121 .. 0.93

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 9.1e-25
                   EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-SS CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPlatt 98 
                   r+a++G+G+ig+ h+++l ++ ++  ++ + d  +era+a+a+++g+ a++  e++ + ++idav++a+ + +h+el +aa++agk+v +EKP+ ++
    CTQ26879.1   5 RFALVGSGFIGQVHAASLARH-EGSALTMVADAAPERAQALAARYGARAVTVSEAIHS-DAIDAVLIASSTPSHAELLEAAARAGKAVYCEKPIDLS 99 
                   89*************888888.99************************9998888887.56************************************ PP

                   HHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  99 veeakelvelaekkgklvsvgy 120
                   ++ a+e+ve++   ++ v+vg+
    CTQ26879.1 100 LARAREVVERVLPLNVPVTVGF 121
                   *********9998888888875 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0     1e-10   2.3e-07       2     112 ..     134     237 ..     133     241 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1e-10
                     HHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSHHCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEEEEEEEEEETTE CS
  GFO_IDH_MocA_C   2 elIengklGevvsvdvwtldtragaeakkrwkrrkkksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaavmsvlnlekgsg 96 
                      ++e+g +G+v  v+      +++ + ++    r   sgG+  d +iH++Dll++L+G + ++vaa g+   ++ + +++++++ s+l + +  g
      CTQ26879.1 134 RQLEQGLIGRVELVQ----MVCRASSMPPLDYLR--SSGGQMRDQAIHFFDLLRFLTGDEVRTVAAMGAALALP-DIAEFGDVDTSILMMQMRGG 221
                     689999999999996....777777777777776..79******************************988777.55555555579999999999 PP

                     EEEEEEECCTSSSEEE CS
  GFO_IDH_MocA_C  97 evitlesgvskglsir 112
                     ++++l +    g++++
      CTQ26879.1 222 ALAQLDNTRRTGHGYD 237
                     9999999999998886 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   1.1   1.7e-08   3.9e-05       1      87 [.       5      86 ..       5      90 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.7e-08
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHT CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlselakdalk 87
                   +++++G+G +g+  a  l+++    + ++++++  pe+a++la+++g+++ +v+ +   +  d v++a  +  ++e+l+++   a +
     CTQ26879.1  5 RFALVGSGFIGQVHAASLARHE--GSALTMVADAAPERAQALAARYGARAVTVSEAIHSDAIDAVLIASSTPSHAELLEAA---ARA 86
                   5799***************997..34455455***************999997777777799************9999988...344 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.2     3e-08   6.7e-05       3      96 ..       8      90 ..       6     111 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3e-08
                     EE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EE CS
  Sacchrp_dh_NADP  3 iiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCietgvhy 96
                     ++G+G++Gq+ a  larh+   a  +vad   e+++alaa     r  a+a+++++  +  +a+    d+v+ +s   s++++l+a++++g ++
       CTQ26879.1  8 LVGSGFIGQVHAASLARHEGS-ALTMVADAAPERAQALAA-----RYGARAVTVSEAIH-SDAI----DAVLIASSTPSHAELLEAAARAGKAV 90
                     79****************987.5889********999985.....77888888887777.4444....99999999999999999999999765 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1     2e-06    0.0045       3      97 ..       7      99 ..       5     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2e-06
                    EEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTS.....EEE CS
  Semialdhyde_dh  3 aivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeagv.....kvi 94
                    a+vG +G +Gq+ +  L++h    l+ ++  + +  ++la++++     + ++v++  +   +++d v+ a +   ++el +++a ag      k i
      CTQ26879.1  7 ALVG-SGFIGQVHAASLARHEGSALTMVADAAPERAQALAARYG----ARAVTVSE--AIHSDAIDAVLIASSTPSHAELLEAAARAGKavyceKPI 96
                    89**.**********************99999999999999988....77777777..4555889**********************9944445556 PP

                    ESS CS
  Semialdhyde_dh 95 Dls 97
                    Dls
      CTQ26879.1 97 DLS 99
                    666 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   2.6e-06    0.0059      13      92 ..       4      82 ..       1     114 [. 0.71

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.6e-06
                  -EEEEES-SHHHHHHHHHHHCC.T-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGH.HHHHHT-SEEEE-SSSSS-SB-H CS
  Shikimate_DH 13 kkvlliGaGemaelvakhLlak.gvkkvvvaNRtlerakelaeelkgeeiealkleel.kellaeadvvisataseepilek 92
                  k+  l+G G +++  a  L+++ g    +va    era++la ++++    a++++e  ++   +a ++ s+t s+  +le+
    CTQ26879.1  4 KRFALVGSGFIGQVHAASLARHeGSALTMVADAAPERAQALAARYGAR---AVTVSEAiHSDAIDAVLIASSTPSHAELLEA 82
                  6789****************984555568999*************888...6666665044444444444555555555554 PP

>> DAO_C  C-terminal domain of alpha-glycerophosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.2e-05      0.05      26      65 ..      26      74 ..       2     110 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.2e-05
                H........T--HHHHHHHHHHHGGGHHHHHHHHHHTH....HHHHHTT CS
       DAO_C 26 y........gldeevaehLaerYGsraeevlelakedekp.elaerlsp 65
                            +e+a+ La rYG+ra +v e  ++d+    l +  +p
  CTQ26879.1 26 EgsaltmvaDAAPERAQALAARYGARAVTVSEAIHSDAIDaVLIASSTP 74
                23333444468899****************9655555422322223333 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   5.7e-05      0.13       2      47 ..       7      56 ..       6      87 .. 0.76
   2 ?   -2.3   0.0       1.3     3e+03      77     102 ..     192     217 ..     190     217 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.7e-05
                EEES-SHHHHHHHHHHHH.HTHCEEEE-SCH..HHHH.HHHHCEEEEETT CS
        ApbA  2 ailGaGaiGsllaakLak.agadvtlilrsr..rlea.lkknGlrltseg 47
                a +G+G iG++ aa+La+  g   t+++  +  r++a   + G r  +++
  CTQ26879.1  7 ALVGSGFIGQVHAASLARhEGSALTMVADAApeRAQAlAARYGARAVTVS 56
                689***************9********99886666665555565555555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.3
                 SGGGHHHHHHHHGGGECTCEEEEEES CS
        ApbA  77 Kayqteealeeikplldpntvvlllq 102
                  a+ ++ al +i+++ d +t +l++q
  CTQ26879.1 192 AAMGAALALPDIAEFGDVDTSILMMQ 217
                 57778889999***********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2414.51
//
Query:       CTQ26880.1  [L=344]
Description: putative transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-34  118.0   0.0    9.5e-34  117.1   0.0    1.4  2  Peripla_BP_4  Periplasmic binding protein domain
    4.6e-09   35.9   0.1    1.8e-08   34.1   0.1    2.0  1  LacI          Bacterial regulatory proteins, lacI family
     0.0012   18.9   0.2         15    5.7   0.1    4.2  4  HTH_29        Winged helix-turn helix
     0.0013   18.2   0.0     0.0037   16.7   0.0    1.7  2  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
      0.002   17.9   0.3         13    5.7   0.0    4.1  4  HTH_23        Homeodomain-like domain
     0.0025   18.1   0.2     0.0025   18.1   0.2    3.1  4  HTH_31        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.023   14.8   0.2       0.12   12.5   0.0    2.3  2  HTH_3         Helix-turn-helix
       0.48   10.2   7.1         10    6.0   0.1    4.3  5  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.7     6e+03      65      81 ..      36      52 ..      34      55 .. 0.74
   2 !  117.1   0.0   4.3e-37   9.5e-34       2     255 ..      67     320 ..      66     323 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.7
                  SHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 65 dstalapalkkakaaGI 81
                  ++++ +++l++a++aG 
    CTQ26880.1 36 SPQTTRKVLQAAREAGL 52
                  66777888888888886 PP

  == domain 2  score: 117.1 bits;  conditional E-value: 4.3e-37
                   EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-S...EEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT- CS
  Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvd...giivapvdstalapalkkakaaGIpVvafdsddapsge 95 
                    v++++ ++ ff ++ +++ + a+ lg+            + Q   +   ia+ +    giiv  +d++a+ +al ++++aG+p ++  +d  p+++
    CTQ26880.1  67 EVFLSSNDSFFFPQLAQDFAAVADSLGYRRLTL-HRTFVPESQPTTLARRIARSCQqrqGIIVFGNDHPAVHDALRRCREAGVPAITLATD-LPGAD 161
                   67788888889999**************99997.3333336666666666666644444********************************.***** PP

                   CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH.-TTCEECCEEESTTTCHHHHHHHHHHHHHTT.TECEEEES CS
  Peripla_BP_4  96 rlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke.ypgikivaevaganwdaekaqqalealltan.pldgilaa 190
                   rl++vg+++ +aG++++ +l++  +   g+v++++G ++ +++++ri+gfr+vl + +p +++ ++  ++++ +e+ ++ +e+ l +  +++gi+ +
    CTQ26880.1 162 RLCHVGINQLQAGRTAGLMLGRMTPRP-GEVLMVSGRQDYSAHRLRIQGFREVLSQrFPHLQLSDV-LAGEERREQITRLVEQALCRSrNIVGIYNT 256
                   *************************98.****************************9******985.566****************5545******* PP

                   SCCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHT CS
  Peripla_BP_4 191 ndgmaegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallk 255
                   + g+++ ++eal+   + g+v+ ++++  +++++ +++G +  t  q++++ ++ a++l++++l+
    CTQ26880.1 257 GLGNTQ-IAEALARHRREGDVCWITHERYNTTRQQLAKGSLALTLDQNTRQHAQLAIDLMLRHLE 320
                   *****9.******************************************************9986 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1   7.8e-12   1.8e-08       5      42 ..      14      51 ..      10      53 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 7.8e-12
                HHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTT CS
        LacI  5 VArlAGVSkaTVSrvLnnkerVseetrerVeaameeln 42
                +Ar+ GV +aTV rvLn ++ Vs +t  +V++a++e +
  CTQ26880.1 14 LARQIGVGVATVDRVLNERGGVSPQTTRKVLQAAREAG 51
                59999******************************975 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.1    0.0068        15      14      34 ..      10      30 ..       1      33 [. 0.85
   2 !    5.2   0.0    0.0097        22      23      48 ..      34      60 ..      31      62 .. 0.86
   3 ?   -2.1   0.0       1.8   4.1e+03      28      41 ..     135     148 ..     132     155 .. 0.75
   4 ?    2.5   0.0     0.066   1.5e+02       8      27 ..     254     272 ..     250     275 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0068
      HTH_29 14 tvsqiAkllglsrrtvyrwlk 34
                + +++A++ g+   tv+r+l+
  CTQ26880.1 10 SLAMLARQIGVGVATVDRVLN 30
                4799**************997 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0097
      HTH_29 23 glsrrtvyrwlkrfeegGlaalld.rr 48
                g+s++t +++l + +e Gl+ +l+  +
  CTQ26880.1 34 GVSPQTTRKVLQAAREAGLKRILPeEH 60
                9*****************999887555 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.8
      HTH_29  28 tvyrwlkrfeegGl 41 
                  v ++l+r++e G+
  CTQ26880.1 135 AVHDALRRCREAGV 148
                 67888888888884 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.066
      HTH_29   8 laeGvstvsqiAkllglsrr 27 
                 ++ G++   qiA++l  +rr
  CTQ26880.1 254 YNTGLG-NTQIAEALARHRR 272
                 678999.9********9998 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.6e-06    0.0037       6     177 ..      68     246 ..      63     276 .. 0.76
   2 ?   -1.5   0.0       0.6   1.3e+03     119     145 ..     272     299 ..     255     318 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.6e-06
                   EEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH......HHHHHHHHTT-SEEEEE-S-GG..HHHHHHHHHHT-EEEEESS--B-TTT CS
  Peripla_BP_1   6 lvlpqldePffldlvkgitkaakehgvdvlllaageeedla......kaidllkakgidgliiatsdts..fdditakaesgipvialedaidapdg 94 
                   + l ++d  ff +l +     a  +g+  l l+    ++ +      + +++++++   g+i+ + d     d++++  e+g+p i l      +d 
    CTQ26880.1  68 VFLSSNDSFFFPQLAQDFAAVADSLGYRRLTLHRTFVPESQpttlarRIARSCQQR--QGIIVFGNDHPavHDALRRCREAGVPAITLATDLPGADR 162
                   55666666667777777777777777777777653222222222363444555544..46766666554477999999999***9999877666689 PP

                   S-EEEE-HHHHHHHHHHHHHHHHHHHT.GEEEEEE-TTSHHHHHHHHHHHHHHHTT-.GGGEEEEE-SSSSHHHHHHHHHHHHTT CS
  Peripla_BP_1  95 vPcvipddtqageestqkLiaeghkrp.iallegpesaltakervqGflaalaeaGl.evkdvhvalgsndiedaaealnelles 177
                   +  v  ++ qag  ++  L +   + + +++++g +  ++ + r qGf++ l +  +  ++  +v+ g + +e+   ++++ l +
    CTQ26880.1 163 LCHVGINQLQAGRTAGLMLGRMTPRPGeVLMVSGRQDYSAHRLRIQGFREVLSQR-FpHLQLSDVLAGEERREQITRLVEQALCR 246
                   9999999*******9999987777766**************************99.878999************99999987765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.6
                   HHT.GEEEEEE-TTSHHHHHHHHHHHHH CS
  Peripla_BP_1 119 krp.iallegpesaltakervqGflaal 145
                   +++ ++++  ++ + t+++ ++G+la  
    CTQ26880.1 272 REGdVCWITHERYNTTRQQLAKGSLALT 299
                   3346888888888888888888887754 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.01        23      19      40 ..      10      31 ..       5      34 .. 0.83
   2 !    5.7   0.0    0.0059        13      28      47 ..      34      53 ..      31      56 .. 0.89
   3 ?   -1.5   0.0       1.1   2.4e+03      34      48 ..     136     150 ..     133     151 .. 0.78
   4 ?    2.3   0.1     0.067   1.5e+02      17      32 ..     257     272 ..     228     272 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.01
      HTH_23 19 svreIAreLgvsrrTvyrwlkr 40
                s +  Ar+ gv   Tv+r+l+ 
  CTQ26880.1 10 SLAMLARQIGVGVATVDRVLNE 31
                566679************9975 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0059
      HTH_23 28 gvsrrTvyrwlkryreeGle 47
                gvs++T +++l++ re Gl 
  CTQ26880.1 34 GVSPQTTRKVLQAAREAGLK 53
                9*************999986 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.1
      HTH_23  34 vyrwlkryreeGleg 48 
                 v   l+r re G+++
  CTQ26880.1 136 VHDALRRCREAGVPA 150
                 777899999999865 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.067
      HTH_23  17 GlsvreIAreLgvsrr 32 
                 Gl  ++IA++L ++rr
  CTQ26880.1 257 GLGNTQIAEALARHRR 272
                 88889******99998 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.2   1.1e-06    0.0025      15      54 ..       9      47 ..       3      53 .. 0.92
   2 ?   -2.5   0.0       3.1   6.9e+03      18      33 ..      86     101 ..      85     110 .. 0.83
   3 ?   -1.5   0.1       1.5   3.4e+03       6      21 ..     140     174 ..     138     185 .. 0.60
   4 ?   -1.6   0.8       1.6   3.6e+03      27      27 ..     272     272 ..     230     308 .. 0.57

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
      HTH_31 15 LsqeevAerlgvsestlsrlEqGrrgrpspavlealaral 54
                +s++ +A+++gv ++t+ r+ + r g +sp++ +++++a 
  CTQ26880.1  9 ISLAMLARQIGVGVATVDRVLNERGG-VSPQTTRKVLQAA 47
                7999*********************9.********99985 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.1
      HTH_31  18 eevAerlgvsestlsr 33 
                 ++vA+ lg+ + tl+r
  CTQ26880.1  86 AAVADSLGYRRLTLHR 101
                 6899999998888777 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.5
      HTH_31   6 LralRera...................GLsqeevA 21 
                 Lr+ Re+                    G+ q +++
  CTQ26880.1 140 LRRCREAGvpaitlatdlpgadrlchvGINQLQAG 174
                 88888875555555555555555555555555555 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.6
      HTH_31  27 s 27 
                  
  CTQ26880.1 272 R 272
                 2 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.2e-05      0.12       8      44 ..       7      43 ..       2      48 .. 0.86
   2 ?   -2.1   0.0       1.9   4.2e+03       8      17 ..     284     293 ..     282     295 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.2e-05
                TTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHH CS
       HTH_3  8 lglsqeeLAeklGvsrstisriEnGernPsletlkkl 44
                +++s+++LA+ +Gv ++t+ r  n +   s++t  k+
  CTQ26880.1  7 KNISLAMLARQIGVGVATVDRVLNERGGVSPQTTRKV 43
                89**********************9998888876665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.9
                 TTHHHHHHHH CS
       HTH_3   8 lglsqeeLAe 17 
                  + ++++LA+
  CTQ26880.1 284 YNTTRQQLAK 293
                 5789999998 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.011        25      19      41 ..       7      29 ..       2      31 .. 0.88
   2 ?   -0.6   0.0      0.51   1.1e+03      23      39 ..      85     101 ..      84     102 .. 0.82
   3 ?   -1.2   0.0      0.79   1.8e+03      26      33 ..     112     119 ..     108     121 .. 0.63
   4 ?   -2.4   0.2       1.9   4.2e+03      10      19 ..     233     242 ..     230     245 .. 0.79
   5 ?    6.0   0.1    0.0045        10      17      34 ..     254     271 ..     248     272 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.011
      HTH_38 19 eGlslreIArrLgrspsTIsREl 41
                ++ sl+  Ar++g+   T+ R l
  CTQ26880.1  7 KNISLAMLARQIGVGVATVDRVL 29
                6779999**************87 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.51
      HTH_38  23 lreIArrLgrspsTIsR 39 
                 ++++A  Lg+ + T +R
  CTQ26880.1  85 FAAVADSLGYRRLTLHR 101
                 57899999999888777 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.79
      HTH_38  26 IArrLgrs 33 
                  Arr+ rs
  CTQ26880.1 112 LARRIARS 119
                 56666666 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.9
      HTH_38  10 ReeIerllae 19 
                 Re+I rl ++
  CTQ26880.1 233 REQITRLVEQ 242
                 9999999876 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.0045
      HTH_38  17 laeGlslreIArrLgrsp 34 
                 ++ Gl++ +IA  L r++
  CTQ26880.1 254 YNTGLGNTQIAEALARHR 271
                 899*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2652.27
//
Query:       CTQ26881.1  [L=307]
Description: putative rhizopine-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-61  207.0  14.1    4.2e-61  206.8  14.1    1.0  1  Peripla_BP_4  Periplasmic binding protein domain
    1.3e-15   57.6   2.0    1.7e-15   57.2   2.0    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
      7e-10   39.5   0.0      5e-09   36.7   0.0    2.0  2  Peripla_BP_3  Periplasmic binding protein-like domain
    6.8e-09   35.8   5.3    2.5e-07   30.7   1.7    2.0  2  Peripla_BP_6  Periplasmic binding protein
     0.0022   17.1   0.0     0.0029   16.8   0.0    1.2  1  ANF_receptor  Receptor family ligand binding region
  ------ inclusion threshold ------
      0.027   15.2   0.2      0.064   14.0   0.2    1.6  1  Mub_B2        Mub B2-like domain


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.8  14.1   1.4e-64   4.2e-61       1     258 []      27     281 ..      27     281 .. 0.96

  Alignments for each domain:
  == domain 1  score: 206.8 bits;  conditional E-value: 1.4e-64
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTT.GCTTT-C CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsd.dapsger 96 
                   igv++  ++++f + +r  +++  k+ g++ ++  da++d+++Q +q++++i +gvd+iiv+pvd++a++p++++a++aGIp v++++  +a+  ++
    CTQ26881.1  27 IGVSMALFDDNFLTILRTSMQKEMKKDGVKSQI-EDAKGDVSQQLQQVQNFIGQGVDAIIVNPVDTNAVKPIMDQATKAGIPLVFVNRRpQAELTDK 122
                   89*******************************.6******************************************************9999999* PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTT.TECEEEESSC CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltan.pldgilaand 192
                    ayvg d+  aG+lq+e+la++++gk g+v+il G++ +  +++r++g+++v ++yp+ikiv++ ++a  ++++a + +++++t   ++++i ++nd
    CTQ26881.1 123 MAYVGSDSILAGRLQMEALAKAMNGK-GNVAILLGDLANESTRDRTKGVEEVVAKYPNIKIVQK-QTAKFTRNDAVDVVSNWMTSGeDIQAIASNND 217
                   **************************.***********************************95.6669***************5536********* PP

                   CHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT-- CS
  Peripla_BP_4 193 gmaegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGkk 258
                   +ma+gal+al ++   + ++++g+D+tp al+++k+G++ at++qd++++g+ av++a +l++G+k
    CTQ26881.1 218 EMAIGALQALGKNP--NHILIAGVDGTPDALQMLKSGKMIATIFQDAKGQGEGAVDAAIKLANGEK 281
                   **********9954..4566********************************************97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   2.0   5.6e-19   1.7e-15      14     202 ..      37     230 ..      25     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 5.6e-19
                   HHHHHHHHHHHHHHHHHTEEEEEEE-S.SHHHHHHHHHHHHHTT-SEEEEE-S-GG.HHHHHHHHHH.T-EEEEESS--B-T..TTS-EEEE-HHHH CS
  Peripla_BP_1  14 Pffldlvkgitkaakehgvdvlllaag.eeedlakaidllkakgidgliiatsdts.fdditakaes.gipvialedaidap..dgvPcvipddtqa 105
                    f   l   ++k+ k+ gv++ +  a+ + ++++++++    +g+d++i+   dt+ +  i  +a + gip +++++  +a   d +  v  d   a
    CTQ26881.1  37 NFLTILRTSMQKEMKKDGVKSQIEDAKgDVSQQLQQVQNFIGQGVDAIIVNPVDTNaVKPIMDQATKaGIPLVFVNRRPQAEltDKMAYVGSDSILA 133
                   555556678999999999998765544044566699999999*********88887799999999999*********9777788999*9******** PP

                   HHHHHHHHHHHHHHHT.GEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHHHHHHHHHH CS
  Peripla_BP_1 106 geestqkLiaeghkrp.iallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaalGavlalkk 201
                   g  + + L +++ +++ +a+l g+  +  ++ r++G ++ +a+    +k+v+  +   +++da + + + + s+ +i+ai  +nde+a+Ga +al k
    CTQ26881.1 134 GRLQMEALAKAMNGKGnVAILLGDLANESTRDRTKGVEEVVAKYPN-IKIVQKQTAKFTRNDAVDVVSNWMTSGEDIQAIASNNDEMAIGALQALGK 229
                   *****************988887766666677888*********55.*******************************************9999877 PP

                   T CS
  Peripla_BP_1 202 e 202
                   +
    CTQ26881.1 230 N 230
                   6 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.24   7.1e+02      28      80 ..      41      86 ..      29     108 .. 0.71
   2 !   36.7   0.0   1.7e-12     5e-09      11     164 ..     150     296 ..     139     298 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.24
                  HHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC-SEEEEE CS
  Peripla_BP_3 28 erergfrqaleelglplnetvvaaddpaaaaaaraalll.qalklaalPtAvia 80
                   ++  +++++++ g+++++  +++d ++  + +++  ++ q +      +A+i+
    CTQ26881.1 41 ILRTSMQKEMKKDGVKSQIEDAKGDVSQQLQQVQN--FIgQGV------DAIIV 86
                  56678899999999999999999998888888777..555665......67777 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 1.7e-12
                   EEEEEE--TTSS-HHHHHHHHHHHHHH.TTSSS-.EEEEE-S-SS-SSHHHHH.......HHHHHCC-SEEEEESSCCHHHHHHHHHCCTT--TTTT CS
  Peripla_BP_3  11 riafiggegdrgasasderergfrqal.eelglp.lnetvvaaddpaaaaaaraalll..qalklaalPtAviaasDelAlgvlqalreaglrvPed 103
                   ++a++   gd  +++ ++r++g+++++ +  +++ +++  ++ ++ +a + + ++     + +      +A+  ++De+A+g+lqal       P+ 
    CTQ26881.1 150 NVAILL--GDLANESTRDRTKGVEEVVaKYPNIKiVQKQTAKFTRNDAVDVVSNWM-TsgEDI------QAIASNNDEMAIGALQALGKN----PNH 233
                   667777..66778999***********9999***5555555555555555555555.223333......8*****************997....*** PP

                   EEEEBSS--SCC.CSSSS..--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--G CS
  Peripla_BP_3 104 lsvigfddsela.alssP..plTtvrqpleelGraaaellldllegekappeqvllppelveRe 164
                   + + g+d+++ a +++     + t+ q++++ G+ a+++ ++l  + +++++ + +p++l++ e
    CTQ26881.1 234 ILIAGVDGTPDAlQMLKSgkMIATIFQDAKGQGEGAVDAAIKLA-NGEKVEKIIDVPYQLITKE 296
                   *********9999887766788*********************8.4555666666999999876 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   1.7   8.4e-11   2.5e-07      46     234 ..      58     248 ..      51     254 .. 0.83
   2 !    8.3   0.1   0.00053       1.6      27      85 ..     244     297 ..     233     307 .] 0.78

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 8.4e-11
                   EEEE-TTSHHHHHHHHHHHHHCT--SE.EEE-BSHHHHHHHHHHHHHHT-EEEESS-HHCCTTSTTEEESS--HHHHHHHHHHHHHHHTTSC.EEEE CS
  Peripla_BP_6  46 verDdaydpdraaeaarrlvdqdgvda.lvgplssavaaavaevlakdgvpvigpagltgekcspyvfslgpsysaqasalveylakelggk.kval 140
                   +++D ++d+++ +++++ ++  +gvda +v p+ +++++ +++ ++k+g+p++ +    + + ++ + ++g +    ++  +e+lak   gk +va+
    CTQ26881.1  58 QIEDAKGDVSQQLQQVQNFIG-QGVDAiIVNPVDTNAVKPIMDQATKAGIPLVFVNRRPQAELTDKMAYVGSDSILAGRLQMEALAKAMNGKgNVAI 153
                   689******************.77666167899*********************998888899999****999999999999999998764447776 PP

                   EEES..SHHHHHHHHHHHHHHHCC.TEEEEEEEEE-TTHHHHHHHHHHHHTTT-SE.EEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHH CS
  Peripla_BP_6 141 vyad..yafgregiaalkaaakaa.Ggevvgeepvplgttdfsaqvlqikaagada.vllagtgadlaallkaaaeaGldakrillvswsgseedlk 233
                   +  d  + + r+  ++++++++++  +++v+  + +++ +d   +v + + +g d+  ++++  +++   + a+++ G ++ +il+++ +g++  l+
    CTQ26881.1 154 LLGDlaNESTRDRTKGVEEVVAKYpNIKIVQKQTAKFTRNDAVDVVSNWMTSGEDIqAIASNNDEMA---IGALQALGKNPNHILIAGVDGTPDALQ 247
                   6555459999*************98899***************************954444444444...666777777777788888888777666 PP

                   H CS
  Peripla_BP_6 234 a 234
                    
    CTQ26881.1 248 M 248
                   5 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00053
                   HHHHHHHHTTEETTEEEEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHH CS
  Peripla_BP_6  27 aafeeiNaaGGinGrkielverDdaydpdraaeaarrlvdqdgvdalvgplssavaaav 85 
                   +a+  +       G+ i  +  D +++ ++a++aa +l ++++v  ++++ +  +++  
    CTQ26881.1 244 DALQMLK-----SGKMIATIFQDAKGQGEGAVDAAIKLANGEKVEKIIDVPYQLITKEN 297
                   5555551.....3899*****************************99999887777655 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   9.7e-07    0.0029      28     182 ..      58     212 ..      48     304 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.7e-07
                   EEEE-TT-HHHHHHHHHHHCCCCEEEEEE.-SSHHHHHHHHHHHCCTT-EEEESS---GG.GG-TTTTTTEEESS--CHHHHHHHHHHHHHTT--EE CS
  ANF_receptor  28 eiidtccdfslaleaaldflkgkvvaviG.pssssvsdavaslanlfkiPvisygstspe.lsdknryptflrtvpsdtsqaqAivdilkhfgWkkv 122
                   +i+d + d+s+ l+++++f+ + v+a+i  p+   +++++   a+++ iP++ +   +++ l+dk+ y      +     q++A+++ ++  g   v
    CTQ26881.1  58 QIEDAKGDVSQQLQQVQNFIGQGVDAIIVnPVDTNAVKPIMDQATKAGIPLVFVNRRPQAeLTDKMAYVGS-DSILAGRLQMEALAKAMNGKG--NV 151
                   789******************88**999879999******************999999999******9965.444444789999999999888..55 PP

                   EEEEESS..HHHHHHHHHHHHHHHHTT.-EEEEEEEESTCHHHCHHHHHHHHHHTTT--EEEE CS
  ANF_receptor 123 aliysdd..dygesglqaleeeleerg.icvalkekipessnddevvrkllkeikskarvivl 182
                   a++  d   +  + + + +ee  +++  i++++k++ +   + +++v+ + + + s +++  +
    CTQ26881.1 152 AILLGDLanESTRDRTKGVEEVVAKYPnIKIVQKQTAK--FTRNDAVDVVSNWMTSGEDIQAI 212
                   55555554678888888888866666668888888776..23344555554445554455444 PP

>> Mub_B2  Mub B2-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   2.2e-05     0.064      19      50 ..     184     214 ..     170     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.2e-05
                 EEEEEEEEEEEEEETTT--EE..EEEE--EE- CS
      Mub_B2  19 vtqtvtftrtatvDkVTgWtatgsttfaavtS 50 
                 ++qt++ftr+  vD V +W ++g+ + +a+ S
  CTQ26881.1 184 QKQTAKFTRNDAVDVVSNWMTSGE-DIQAIAS 214
                 79*****************99444.5666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2469.19
//
Query:       CTQ26882.1  [L=494]
Description: fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-59  199.1   0.0    5.9e-33  114.3   0.0    2.2  2  ABC_tran     ABC transporter
    1.8e-09   37.9   0.0     0.0018   18.1   0.0    3.1  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    5.4e-05   22.8   0.0     0.0023   17.6   0.0    2.4  2  AAA_29       P-loop containing region of AAA domain
    0.00026   20.9   0.0      0.041   13.8   0.0    2.9  3  RsgA_GTPase  RsgA GTPase
     0.0016   17.9   2.2       0.89    9.0   0.0    3.7  3  SMC_N        RecF/RecN/SMC N terminal domain
     0.0029   16.5   1.6        1.9    7.2   0.0    3.8  4  ABC_ATPase   Predicted ATPase of the ABC class
      0.005   16.7   0.1      0.021   14.6   0.0    2.0  3  MukB         MukB N-terminal
     0.0094   15.7   1.9       0.24   11.1   0.4    3.2  3  AAA_30       AAA domain
  ------ inclusion threshold ------
      0.012   16.2   0.0      0.027   15.0   0.0    1.5  1  AAA_23       AAA domain
      0.012   15.9   0.8       0.73   10.1   0.1    3.3  3  AAA_22       AAA domain
      0.034   14.2   0.0       0.68   10.0   0.0    2.6  2  MMR_HSR1     50S ribosome-binding GTPase
      0.042   14.2   0.2       0.23   11.8   0.0    2.3  3  AAA_16       AAA ATPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.0   3.9e-36   5.9e-33       1     137 []      21     170 ..      21     170 .. 0.98
   2 !   82.8   0.0     2e-26   3.1e-23       2     136 ..     270     424 ..     269     425 .. 0.93

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 3.9e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................esd 82 
                 l+nvsl +++g+++a++GenGaGKStL+k+l+g ++p++G+i+++g++++  +++  lr+ i++++qe +l p++tv+en                + +
  CTQ26882.1  21 LDNVSLRVRPGTVHALMGENGAGKSTLMKCLIGIYRPDKGSIRVKGEPVEFtDTMDALRSGISMIHQELNLVPHMTVAENiwlgrepmkygfvdhgQLT 119
                 79************************************************98999******************************************** PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++ +++l+kl++  ++d+ v      LS   +q+v++a+a+  +++++++DEpt+
  CTQ26882.1 120 RQTQALLDKLNIRLTADRLV----GDLSIAAQQMVEIAKAVSWNADIVIMDEPTS 170
                 ********************....*****************************96 PP

  == domain 2  score: 82.8 bits;  conditional E-value: 2e-26
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................x RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................e 80 
                 ++vs+++++ge++++ G  GaG S +++ l g+++ ++Ge+l+dg++++   +    +k ++ l+++   + lf  l+v en                +
  CTQ26882.1 270 HDVSFSVRRGEILGVAGLVGAGRSEVMESLFGMERFDSGEVLIDGAPVTIdSPSVAIEKGMALLTEDrkkSGLFLVLSVLENmsivkmpeyigksgfvQ 368
                 79***********************************************9789999***********99999**********9*999999999988865 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                   + +e+ +++++  ++k+ ++++  ++LSgG +q+v +ar ll +pk+l+lDEpt
  CTQ26882.1 369 HVKMAEDCMEQIRRLNIKTPTMDQIINNLSGGNQQKVLIARWLLAQPKILILDEPT 424
                 55559999999999998888888888*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.1e-05     0.031       2      25 ..      34      57 ..      33      84 .. 0.73
   2 ?    1.8   0.0      0.11   1.7e+02     259     297 ..     161     199 ..     137     204 .. 0.89
   3 !   18.1   0.0   1.2e-06    0.0018     234     296 ..     394     453 ..     377     460 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.1e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl 25
                 +l G Ng+GKS+L+++l ++ r 
  CTQ26882.1 34 HALMGENGAGKSTLMKCLIGIYRP 57
                5799**************776543 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.11
      AAA_21 259 sllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 ++++ DEp + L    +++l++++++l++ g  +i  +H
  CTQ26882.1 161 DIVIMDEPTSALTEGEVAHLFTIIRDLRAQGKAIIYISH 199
                 899**************************9999*****9 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 1.2e-06
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296
                 +++lS G ++   ++ +ll+++   ++l++DEp  g++  + ++++ l++el+++g+ vi+++
  CTQ26882.1 394 INNLSGGNQQKVLIARWLLAQP---KILILDEPTRGIDVGAKAEIYHLISELANRGVAVIMVS 453
                 5678999999977777888777...9*********************************9876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.6e-06    0.0023      13      43 ..      22      52 ..      19      63 .. 0.80
   2 ?    2.6   0.0     0.075   1.1e+02       9      39 ..     266     296 ..     258     300 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.6e-06
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDAiq 43
                d+ ++++++  ++ l+G++G+GKSTl+  ++
  CTQ26882.1 22 DNVSLRVRPGTVHALMGENGAGKSTLMKCLI 52
                667788888779**************96665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.075
      AAA_29   9 WgtfdghtieidlkgatlltGpsGsGKSTll 39 
                  g f++ ++++++ ++  ++G  G+G S ++
  CTQ26882.1 266 QGVFHDVSFSVRRGEILGVAGLVGAGRSEVM 296
                 58999999***9777999*********9776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.7e-05     0.041      97     123 ..      28      55 ..      10      77 .. 0.79
   2 ?    3.5   0.0     0.039        58      72     129 ..     250     309 ..     227     314 .. 0.79
   3 ?   -3.2   0.0       4.4   6.6e+03      59      85 ..     430     455 ..     426     463 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
                  CTT.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinallpel 123
                  ++   + +l+G+ G+GKStL++ l++  
   CTQ26882.1  28 VRPgTVHALMGENGAGKSTLMKCLIGIY 55 
                  55447899**************998755 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.039
                  HHHTTSEEEE--TTTHTTH.HHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase  72 lealgyevllvsaktkegl.eelkellkd.ktsvlvGqSGvGKStLinallpelelktge 129
                   +++g evl+v++ t++g+ ++++  ++  ++  ++G  G+G+S ++++l + ++   ge
   CTQ26882.1 250 NNTIGEEVLTVRNLTRQGVfHDVSFSVRRgEILGVAGLVGAGRSEVMESLFGMERFDSGE 309
                  5678999999998888775278998888779*****************999877766666 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.4
                  --HHHHHHHHHHHHHHTTSEEEE--TT CS
  RsgA_GTPase  59 leeeeeleelkeelealgyevllvsak 85 
                    ++e + +l +el++ g++v++vs++
   CTQ26882.1 430 GAKAE-IYHLISELANRGVAVIMVSSE 455
                  55555.777778888888888888776 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00059      0.89      25      44 ..      32      51 ..      16      65 .. 0.80
   2 ?    4.0   0.1     0.019        28     159     202 ..     160     204 ..     118     219 .. 0.80
   3 ?    1.8   0.1     0.088   1.3e+02     134     134 ..     335     335 ..     271     474 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00059
                SEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAi 44
                 + a++G+NG+GKs l+  +
  CTQ26882.1 32 TVHALMGENGAGKSTLMKCL 51
                3689************9876 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.019
                 -SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
       SMC_N 159 aplyllDeidaaLDeknvkkvaellkekskn.aQfivislreeml 202
                 a ++++De  +aL e +v+ + ++++  + +   +i is++ + +
  CTQ26882.1 160 ADIVIMDEPTSALTEGEVAHLFTIIRDLRAQgKAIIYISHKMDEI 204
                 56899*********************9998834566689886554 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.088
                 T CS
                 x RF
       SMC_N 134 k 134
                 +
  CTQ26882.1 335 E 335
                 0 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.039        59     243     264 ..      29      51 ..      24      60 .. 0.82
   2 ?    1.6   0.2     0.064        95     322     352 ..     141     171 ..     131     174 .. 0.84
   3 ?    0.6   0.0      0.13   1.9e+02     306     349 ..     380     423 ..     371     427 .. 0.87
   4 !    7.2   0.0    0.0013       1.9     378     417 ..     437     475 ..     433     487 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.039
                 -SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 243 pkG.vtlIvGggfhGKsTLLeAl 264
                 + G v +++G +  GKsTL++ l
  CTQ26882.1  29 RPGtVHALMGENGAGKSTLMKCL 51 
                 55668999************998 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.064
                 S--HHHHHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 322 dASGStsqAanimealeagakllLiDEDtsA 352
                 d S ++ q ++i++a+  +a+++++DE tsA
  CTQ26882.1 141 DLSIAAQQMVEIAKAVSWNADIVIMDEPTSA 171
                 55667788899*******************9 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.13
                 B---CCC--STTEEESS--HHHHHHHHHHHHHHTT-SEEEEEGG CS
  ABC_ATPase 306 innLPegkdttkfstedASGStsqAanimealeagakllLiDED 349
                 i++L  ++ t + + ++ SG   q + i++ l a+ k+l++DE 
  CTQ26882.1 380 IRRLNIKTPTMDQIINNLSGGNQQKVLIARWLLAQPKILILDEP 423
                 677777888999999****************************6 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0013
                 HCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEE CS
  ABC_ATPase 378 drvrelykklgvstilvvggsgdyldvAdtvilmeeykpk 417
                 +++ el ++ gv +i+v++ + + l ++d+v++m+e +++
  CTQ26882.1 437 HLISEL-ANRGVAVIMVSSELPEILGMSDRVMVMHEGRIT 475
                 667777.899************************987665 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.4e-05     0.021      28      59 ..      33      64 ..      30      76 .. 0.90
   2 ?   -3.9   0.0       6.7     1e+04      31      45 ..     284     298 ..     267     300 .. 0.79
   3 ?   -2.3   0.0       2.1   3.1e+03      20      35 ..     386     401 ..     382     405 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
                HHHHHS--SHHHHHHHHHHHHHHS--TTT--- CS
        MukB 28 vttlsGgnGaGksttmaafvtaliPdlsllhf 59
                v +l G nGaGkst m +++ +  Pd   ++ 
  CTQ26882.1 33 VHALMGENGAGKSTLMKCLIGIYRPDKGSIRV 64
                889***********************987765 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 6.7
                 HHS--SHHHHHHHHH CS
        MukB  31 lsGgnGaGksttmaa 45 
                 + G  GaG+s +m +
  CTQ26882.1 284 VAGLVGAGRSEVMES 298
                 567889999999976 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.1
                 EEE-HHHHHHHHHS-- CS
        MukB  20 rtfdldelvttlsGgn 35 
                 +t  +d+++  lsGgn
  CTQ26882.1 386 KTPTMDQIINNLSGGN 401
                 56689**********9 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.4   0.00016      0.24      18      59 ..      31      72 ..      24     197 .. 0.59
   2 ?   -2.7   0.0       2.8   4.1e+03      21      38 ..     282     299 ..     276     312 .. 0.79
   3 ?    1.2   0.0      0.17   2.6e+02      65     122 ..     382     452 ..     365     454 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrviglAptgkaA 59
                  v++l G  G+GK+t++k l  +++ ++g++ +     +  
  CTQ26882.1 31 GTVHALMGENGAGKSTLMKCLIGIYRPDKGSIRVKGEPVEFT 72
                56899*****************99999976666554444444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
      AAA_30  21 avltGpAGtGKttalkal 38 
                   + G  G+G + ++++l
  CTQ26882.1 282 LGVAGLVGAGRSEVMESL 299
                 56789999****999876 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.17
      AAA_30  65 elgieastiakllkrlk.........grarlepgtllivDEagmv....dtkqlaallkaaekagakvilv 122
                  l+i++ t+++++++l          +r+ l++ ++li DE        + +++ +l+++++++g+ vi+v
  CTQ26882.1 382 RLNIKTPTMDQIINNLSggnqqkvliARWLLAQPKILILDEPTRGidvgAKAEIYHLISELANRGVAVIMV 452
                 5678999999999888899999999977889999*******765444445666777777777777777776 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.8e-05     0.027      21      39 ..      33      51 ..       7      55 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.8e-05
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                + ++ G+NGaGK+T++ ++
  CTQ26882.1 33 VHALMGENGAGKSTLMKCL 51
                55789***********998 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00049      0.73       7      27 ..      33      53 ..      28     167 .. 0.89
   2 ?    0.9   0.0      0.33     5e+02       5      26 ..     279     300 ..     276     323 .. 0.86
   3 ?    0.9   0.0      0.35   5.2e+02      82     127 ..     407     451 ..     364     459 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00049
      AAA_22  7 ilvvtGesGtGKTtllrrlle 27
                + +++Ge G+GK+tl++ l  
  CTQ26882.1 33 VHALMGENGAGKSTLMKCLIG 53
                5689************98865 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.33
      AAA_22   5 agilvvtGesGtGKTtllrrll 26 
                   il v G +G+G++ +++ l+
  CTQ26882.1 279 GEILGVAGLVGAGRSEVMESLF 300
                 5677799***********9987 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.35
      AAA_22  82 leqalraravielliiDEaqh.lr...seealeeLrsllnlsrkgvqliL 127
                 +++ l a+ +  +li+DE  + ++   ++e++  +++l+n    gv++i+
  CTQ26882.1 407 IARWLLAQPK--ILILDEPTRgIDvgaKAEIYHLISELAN---RGVAVIM 451
                 4555666666..9999999998877655888888888888...6666665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00045      0.68       3      21 ..      35      53 ..      33      91 .. 0.81
   2 ?    1.0   0.0      0.28   4.2e+02       3      22 ..     283     302 ..     281     349 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00045
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                a++G   +GKStL++ l+g
  CTQ26882.1 35 ALMGENGAGKSTLMKCLIG 53
                799**************98 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.28
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 +++G   +G S ++ +l+g 
  CTQ26882.1 283 GVAGLVGAGRSEVMESLFGM 302
                 799*************9984 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00016      0.23      18      64 ..      27      74 ..      18     164 .. 0.79
   2 ?   -3.2   0.0       6.5   9.7e+03      76     112 ..     228     264 ..     202     278 .. 0.70
   3 ?   -1.2   0.1       1.6   2.3e+03      20      45 ..     277     300 ..     258     304 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00016
      AAA_16 18 rvrsgrpelvllsGesGvGKsslvrellralekdg.giflrgkcdql..e 64
                rvr g   +  l Ge G GKs+l+++l   ++ d+  i ++g+ +++  +
  CTQ26882.1 27 RVRPG--TVHALMGENGAGKSTLMKCLIGIYRPDKgSIRVKGEPVEFtdT 74
                45544..45679****************9999996255599998888322 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.5
      AAA_16  76 lareellrqlldeaesaeleawrekleealaavpela 112
                 ++r +l++q+  ++ +++++ +  ++ e++  v++l+
  CTQ26882.1 228 FTRQSLITQMVGRELTQLFPKFNNTIGEEVLTVRNLT 264
                 5566777777777777777777777666666666555 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.6
      AAA_16  20 rsgrpelvllsGesGvGKsslvrell 45 
                 r+g  e++ + G  G G s ++++l+
  CTQ26882.1 277 RRG--EILGVAGLVGAGRSEVMESLF 300
                 444..89999**********999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 3577.57
//
Query:       CTQ26883.1  [L=343]
Description: D-ribose transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-45  155.4  40.7    3.1e-45  154.4  40.7    1.5  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4  40.7   1.7e-49   3.1e-45       3     268 .]      62     332 ..      60     332 .. 0.91

  Alignments for each domain:
  == domain 1  score: 154.4 bits;  conditional E-value: 1.7e-49
  BPD_transp_2   3 lnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl...........lllallvallvgaavglllgllvlrlkvdeliit 88 
                   + ++ ++ai++i+A+G++ v+ i+ +i+l+ g+++al+a+vaa l++  +sl             + + ++++vg+++gl +g+lv+r++++++i+t
    CTQ26883.1  62 VLIVLQVAIIGIIAVGVTQVI-ITTGIDLSSGSVIALAAVVAASLAQTSDSLspmfpalvnlpAVIPICAGIGVGLLCGLTNGFLVTRTGIPPFIAT 157
                   56899****************.**************************9999*********6655666789************************** PP

  BPD_transp_2  89 llllsvlvgltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvi 185
                   l++++ ++gl++ ++t++   ++ ++s++++ + a           v++++++++++++ l++tr+G  ++a+g+n + a+++Ginv+++ ++++ i
    CTQ26883.1 158 LGMMVSARGLAQ-YYTQGNPISFLSDSFTAIGQGAM---------PVIIFFVIAAVFHIALKHTRYGKYVYAIGGNMTSAKVSGINVNKYLVIVYTI 244
                   ************.44444444443333333333333.........33788899******************************************** PP

  BPD_transp_2 186 sgalAglaGallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   +gal+glaG++la++  s++ ++g+ ++++aiaa+v+Gg       g++ gt+iGa+i+g++ks + t++g++  +++++ g+++++++
    CTQ26883.1 245 AGALSGLAGVVLAARVSSGQSSMGMSYELDAIAAAVIGGSslmggvGRITGTLIGAMILGLIKS-GFTFVGVDAYVQDIIKGIIIVAAV 332
                   ****************************************************************.999999**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2538.28
//
Query:       CTQ26884.1  [L=221]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.02   14.9   0.1       0.02   14.9   0.1    2.0  3  SLATT_fungal  SMODS and SLOG-associating 2TM effector domain
       0.13   12.6   0.0        1.5    9.2   0.0    2.1  2  mCpol         minimal CRISPR polymerase domain


Domain annotation for each model (and alignments):
>> SLATT_fungal  SMODS and SLOG-associating 2TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   2.3e-06      0.02      53      92 ..      27      70 ..      26     106 .. 0.77
   2 ?   -1.9   0.0      0.36   3.2e+03      52      68 ..     117     133 ..     115     135 .. 0.81
   3 ?   -3.6   0.1       1.2   1.1e+04      36      40 ..     199     203 ..     195     217 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.3e-06
  SLATT_fungal 53 GalnTviAg..lLArlrgsgePersrkrrkdlekvireiea..f 92
                  G + T++Ag  +LA+ rg ++P r  +r+++++++ ++ +    
    CTQ26884.1 27 GLIVTLLAGlaILALGRGMNLPAREVYRERQIRQLEEDAQWvaE 70
                  567799999445*************************9987543 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.36
  SLATT_fungal  52 LGalnTviAglLArlrg 68 
                   L+a   + A++LA +++
    CTQ26884.1 117 LAASHALPASVLAQVQA 133
                   88888999999998765 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 1.2
  SLATT_fungal  36 aLgal 40 
                   +Lga+
    CTQ26884.1 199 GLGAV 203
                   44443 PP

>> mCpol  minimal CRISPR polymerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.066   5.9e+02      40      65 ..      97     121 ..      88     139 .. 0.71
   2 ?    9.2   0.0   0.00017       1.5      85     106 ..     196     217 ..     190     221 .] 0.84

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.066
       mCpol  40 kkllkdelgasvifaaGDsilakssl 65 
                 + +l  e +++++ + GD+ l+ +s 
  CTQ26884.1  97 Q-TLARERHYQLLLVNGDGHLLAASH 121
                 3.4455559*********98777654 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00017
       mCpol  85 vSiGvGktlrealiaLkkAksk 106
                 v+iG+G+ +++al+aL+ A   
  CTQ26884.1 196 VTIGLGAVFASALLALRQAARA 217
                 79***************98554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1782.75
//
Query:       CTQ26885.1  [L=349]
Description: Sucrose operon repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-20   73.2   0.3    3.9e-20   71.4   0.1    2.1  2  LacI          Bacterial regulatory proteins, lacI family
    5.1e-13   49.7   0.0    1.1e-11   45.4   0.0    2.2  2  Peripla_BP_3  Periplasmic binding protein-like domain
    2.1e-11   43.9   0.0      4e-11   43.0   0.0    1.5  1  Peripla_BP_4  Periplasmic binding protein domain
    1.3e-08   34.6   0.0    1.7e-08   34.2   0.0    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
  ------ inclusion threshold ------
      0.014   15.2   0.1       0.03   14.1   0.1    1.5  1  HTH_10        HTH DNA binding domain
      0.024   15.0   0.7      0.086   13.2   0.7    1.9  1  HTH_31        Helix-turn-helix domain
      0.026   15.0   0.3      0.067   13.6   0.1    1.8  2  HTH_26        Cro/C1-type HTH DNA-binding domain
      0.036   13.9   0.3       0.12   12.2   0.3    1.8  1  TetR_N        Bacterial regulatory proteins, tetR family
       0.13   12.3   0.1       0.38   10.8   0.1    1.8  1  HTH_3         Helix-turn-helix
       0.17   11.9   0.0         21    5.2   0.0    2.4  2  HTH_19        Helix-turn-helix domain
        0.2   11.6   0.1       0.42   10.5   0.1    1.5  1  TrmB          Sugar-specific transcriptional regulator TrmB


Domain annotation for each model (and alignments):
>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.3   2.2e+03      17      26 ..      12      21 ..      11      21 .. 0.91
   2 !   71.4   0.1   2.4e-23   3.9e-20       1      46 []      22      70 ..      22      70 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.3
                HHHCTTSSSS CS
        LacI 17 SrvLnnkerV 26
                SrvL++++rV
  CTQ26885.1 12 SRVLMKTKRV 21
                9****99988 PP

  == domain 2  score: 71.4 bits;  conditional E-value: 2.4e-23
                -HHHHHHHCTS-HHHHHHHCTTS...SSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnk...erVseetrerVeaameelnYiPn 46
                tikD+A+lAGVSkaT+S vLn++    rV++etrerV+a+++e++Y+P+
  CTQ26885.1 22 TIKDIAELAGVSKATASLVLNGRgkeLRVAQETRERVLAIAREQHYQPS 70
                9**********************9999*********************7 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.13   2.1e+02     116     155 ..      85     130 ..      73     160 .. 0.57
   2 !   45.4   0.0   6.6e-15   1.1e-11       9     163 ..     197     347 ..     189     348 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.13
                   CSSSS--.....EEEE--HHHHHHHH.HHHHHHHHTT---S--EEE CS
  Peripla_BP_3 116 alssPpl.....TtvrqpleelGraa.aellldllegekappeqvl 155
                   +l++P +      +++  le+l+r+a ++ll++  ++++ ++++v+
    CTQ26885.1  85 GLVVPEItnygfAVFSHELETLCREAgVQLLISCTDENPGQESVVV 130
                   4455555333335566677777777634444455433333333332 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 6.6e-15
                   --EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH..HHCC-SEEEEESSCCHHHHHHHHHCCTT--TTTT CS
  Peripla_BP_3   9 hrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal..klaalPtAviaasDelAlgvlqalreaglrvPed 103
                     +++f+g  g+ ++s s++r++gf q l+++g++l++ +v +  ++  ++++      al   l+++P+A++ a   l  gvl++  +++l     
    CTQ26885.1 197 ADEFWFLG--GQPRLSPSRDRLAGFTQGLAQAGITLRPEWVINGNYHPSSGYEMFA---ALcaRLGRPPKALFTAACGLLEGVLRYMSQHHL-LDSN 287
                   57899***..999********************************99999999866...333555669**********************99.699* PP

                   EEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE-- CS
  Peripla_BP_3 104 lsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveR 163
                   + + +fdd  l   +s  + tv q+ ++l+  + +ll +l++g+  +p q++lp +l +R
    CTQ26885.1 288 IHLASFDDHYLYDSLSLRIDTVQQDNRQLAWHCYDLLSQLIDGQAPEPLQRYLPATLQIR 347
                   *******98888777777***********************77777777777**99*999 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   2.4e-14     4e-11       1     257 [.      84     331 ..      84     332 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 2.4e-14
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CE CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerl 97 
                   ig+vv+  +n  f  +   le  ++e+g++  + + ++ +  ++  +++++ia++vdg+iva++ ++ +    +k+ ++  pVv fd+   ps++ l
    CTQ26885.1  84 IGLVVPEITNYGFAVFSHELETLCREAGVQLLI-SCTDENPGQESVVVNNMIARQVDGLIVASCMHSDAD--YQKLSEQ-LPVVLFDRS--PSDSAL 174
                   789999999997777**************9999.5888888888889*******************9999..7888777.*********..****** PP

                   EEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHH..TTTECEEEESS CS
  Peripla_BP_4  98 ayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaeva.ganwdaekaqqaleallt..anpldgilaan 191
                     v +d+ +  + +   +a +  ++   +  l G+p  + +++r++gf++ l++  gi++ +e++ ++n+ ++ +++  +al +    p ++ ++a 
    CTQ26885.1 175 PLVMTDSVTPTAELISRIAPQHADE---FWFLGGQPRLSPSRDRLAGFTQGLAQ-AGITLRPEWViNGNYHPSSGYEMFAALCArlGRPPKALFTAA 267
                   *********9999999999999976...9999**********************.8999999766677****************876678******* PP

                   CCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 192 dgmaegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGk 257
                    g  eg+l+++++  l +   +     +++ l    +  id tv qd ++l++ +++l+ +l++G+
    CTQ26885.1 268 CGLLEGVLRYMSQHHLLDSN-IHLASFDDHYLYDSLSLRID-TVQQDNRQLAWHCYDLLSQLIDGQ 331
                   *************9998775.44444445555444455556.888888888888888888888886 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   1.1e-11   1.7e-08       2     177 ..      82     255 ..      81     318 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.1e-11
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-E CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPc 97 
                   +++glv+p+ ++  f+     ++   +e gv++l+  ++e++ ++   ++ + a+++dgli+a+   s  d ++  e+ +pv++ ++   +  ++P+
    CTQ26885.1  82 HTIGLVVPEITNYGFAVFSHELETLCREAGVQLLISCTDENPGQEsVVVNNMIARQVDGLIVASCMHSDADYQKLSEQ-LPVVLFDRSPSDS-ALPL 176
                   899******999889999999999999*******999*****9998899**************999998999999999.********96666.9*** PP

                   EEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT CS
  Peripla_BP_1  98 vipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelles 177
                   v+ d  +  +e       +   +    l+g+   + ++ r  Gf + la+aG  ++  +v  g  +   ++e   +l  +
    CTQ26885.1 177 VMTDSVTPTAELISRIAPQHADE-FWFLGGQPRLSPSRDRLAGFTQGLAQAGITLRPEWVINGNYHPSSGYEMFAALCAR 255
                   ****9997777766655444444.566677777779***************************99999998877766544 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.9e-05      0.03      22      44 ..      19      41 ..      17      44 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-05
      HTH_10 22 RrvtlkeLAkelGIskstlsehL 44
                +rvt+k++A+  G+sk+t+s  L
  CTQ26885.1 19 KRVTIKDIAELAGVSKATASLVL 41
                89****************98776 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.7   5.3e-05     0.086       8      51 ..      14      62 ..      13      65 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.3e-05
      HTH_31  8 alReraGLsqeevAerlgvsestlsrlEqGrrgrp.....spavleala 51
                 l +  +++ ++ Ae++gvs++t s + +Gr  +      +++ + a+a
  CTQ26885.1 14 VLMKTKRVTIKDIAELAGVSKATASLVLNGRGKELrvaqeTRERVLAIA 62
                56777899***********************987745555555555555 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   4.1e-05     0.067       3      39 ..      13      49 ..      13      60 .. 0.92
   2 ?   -3.3   0.0       7.8   1.3e+04      42      53 ..     102     113 ..     100     114 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.1e-05
      HTH_26  3 relmadrgitkseLargtgisaatlsrlvkgkpervs 39
                r+lm+++++t+++ a+ +g+s+at s  ++g+ + ++
  CTQ26885.1 13 RVLMKTKRVTIKDIAELAGVSKATASLVLNGRGKELR 49
                79****************************9976665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.8
      HTH_26  42 tLdkiCdaLgct 53 
                 +L+++C+  g++
  CTQ26885.1 102 ELETLCREAGVQ 113
                 789999866655 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   7.2e-05      0.12      16      32 ..      20      36 ..      18      38 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.2e-05
                T--HHHHHHHHTSSHHH CS
      TetR_N 16 attvreIAkrAGvskga 32
                ++t+++IA+ AGvsk++
  CTQ26885.1 20 RVTIKDIAELAGVSKAT 36
                79*************98 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00023      0.38      10      33 ..      21      44 ..      14      53 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
                HHHHHHHHHHTSSHHHHHHHHTTS CS
       HTH_3 10 lsqeeLAeklGvsrstisriEnGe 33
                 +++++Ae++Gvs++t s   nG+
  CTQ26885.1 21 VTIKDIAELAGVSKATASLVLNGR 44
                599*******************95 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.013        21      11      42 ..      19      55 ..       4      64 .. 0.77
   2 ?    4.2   0.0     0.027        44      34      61 ..     237     265 ..     235     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.013
      HTH_19 11 lgltqeelaerlgisrskisaiEngkkdvps.....a 42
                +  t++++ae +g+s++  s   ng+ +++      +
  CTQ26885.1 19 KRVTIKDIAELAGVSKATASLVLNGRGKELRvaqetR 55
                6689999999999999999999999766665544555 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.027
      HTH_19  34 ngkkdvps..aelllkiaealgidleyllq 61 
                 ng++  ps  +e++ +++  lg ++++l++
  CTQ26885.1 237 NGNY-HPSsgYEMFAALCARLGRPPKALFT 265
                 7777.77788******************98 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00026      0.42      16      44 ..      14      42 ..      13      43 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00026
                HHHHHCCCHHCHHCCCTTSSCHCHHHHHH CS
        TrmB 16 aLlklgpatadeiaeelgvprskvYevLr 44
                +L+k ++ t+++iae +gv+++++  vL+
  CTQ26885.1 14 VLMKTKRVTIKDIAELAGVSKATASLVLN 42
                5899********************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2766.13
//
Query:       CTQ26886.1  [L=466]
Description: Sucrose-6-phosphate hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-97  325.8   0.0    3.9e-97  325.5   0.0    1.1  1  Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal dom
    2.5e-10   40.6   0.0    3.8e-10   40.0   0.0    1.2  1  Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
    9.3e-06   25.1   0.0    3.6e-05   23.2   0.0    1.8  1  Glyco_hydro_43   Glycosyl hydrolases family 43


Domain annotation for each model (and alignments):
>> Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.5   0.0  6.5e-101   3.9e-97       1     305 []      31     336 ..      31     336 .. 0.97

  Alignments for each domain:
  == domain 1  score: 325.5 bits;  conditional E-value: 6.5e-101
                      SB--SSEEEEEEEEEEECTTEEEEEEEEETTSSSS-SBEEEEEEESSSSSBEEEEEEE-SSSGGCTTEEEEEEEEE-TT-EEEEEEEE-T.... CS
  Glyco_hydro_32N   1 HfqppkgwlNDPnglvyykgeYhlFYqynpkgavwgnisWghavSkDlvhWeelpvalapdeefdsngafSGsavvdddklvllYTgnvk.... 90 
                      H++p +g+lNDPng++++ g+YhlFYq+np ++ +  ++Wgh+ S Dl+hW+++p+al pdee+d+ng++SGsav+ ++ l+l+YTgnvk    
       CTQ26886.1  31 HLAPVNGLLNDPNGFCQVAGRYHLFYQWNPLACDHTYKCWGHWSSADLLHWRHEPIALMPDEEYDRNGCYSGSAVEFEGALTLCYTGNVKfpdg 124
                      9*******************************************************************************************97 PP

                      CSEEEEEEEEESSTTSSEEE-TT--SB-.-TTTSTTSEEEEEEEEETTTEEEEEEEECCT.TCCEEEEEEESSSSSEEEECCESEECC.T.... CS
  Glyco_hydro_32N  91 eeeqvQnlayskdkgreftkyeenpviaekpeentkhfRDPkvawkedgkwvmvvgaqdk.kkgkillYkskdlkewelaselleskkek.... 179
                       ++  Q+la+  +++ +f+k    pv++  pe++t h+RDPkv w++dg+w+mv+gaqd  ++gk+ll++++dl+ew+l++e++ ++ ++    
       CTQ26886.1 125 GRTAWQCLATE-NADGTFRK--LGPVLPL-PEGYTGHVRDPKV-WRQDGRWYMVLGAQDVqQRGKVLLFTASDLREWRLVGEIAGHDVNGlana 213
                      559********.9999****..89***95.*************.***************99***********************9999878999 PP

                      TTEEEEEEEEEEECSTT-ECEEEEEEEEC.STT......TTTTEEEEEEEEEETTTTEEEECCCCCEESBSSSS-EEEEEECCTTTCEEEEEEE CS
  Glyco_hydro_32N 180 ggmwEcpdlfeldekdeeekvklvlkvspqgle......dntsqdyyfigkfdaekkkftadeeelkelDyGkdfYAsqtfededkrriligWm 267
                      g+mwEcpdlf+l++++       +l+++pqgl+       nt++++++ g+fdae+  f  + + l+elD G++fYA+qt++++d+rr+l+gWm
       CTQ26886.1 214 GYMWECPDLFPLADTH-------LLICCPQGLAretqrfLNTYPAVWMAGRFDAERGIF-DH-GPLHELDSGFEFYAPQTMQAKDGRRLLVGWM 298
                      **************98.......*************9999*******************.55.9****************************** PP

                      S-TTTHCCCCC...CTEE-EE--EEEEEES-TSSSEEEEE CS
  Glyco_hydro_32N 268 gewdseeadvp..ekgwagalslpReltlkdsgkkLvqkP 305
                      g +d ee ++p  ++gw + ++++Rel+++   ++L+q+P
       CTQ26886.1 299 GVPDGEEMHQPtrAQGWIHQMTCVRELEWQA--GTLYQRP 336
                      ******99999999***************88..*****99 PP

>> Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   6.4e-14   3.8e-10     101     135 ..     403     441 ..     367     454 .. 0.76

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 6.4e-14
                      -......-EEEEEEEETTEEEEEET.TTEEEEEE--..T CS
  Glyco_hydro_32C 101 l....dgklkLrilvDkssvEvFvndGrtaiTsrvyPte 135
                            +  +Lri++D+ssvE+F+ndG+ +++sr++P  
       CTQ26886.1 403 HrywrGEARRLRIFIDRSSVEIFINDGEGVMSSRFFPGY 441
                      2346444689***************************84 PP

>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     6e-09   3.6e-05      15     197 ..      45     233 ..      33     248 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 6e-09
                     EEEETTCEEEEEEEBTEE.....SEEEEEEESSSSSCEEEEECEESTTTCSTTTEECTEEEEEEEETTEEEEEEE.EEETTCCCSEEEEEEE.SS CS
  Glyco_hydro_43  15 ilrvgedyYlvtstfewf.....pglrifhSkdLvnWkqvgrvlerrsqlsmkgknasWAPeiskhdgkyylyyt.atkkgeakqgifvvta.ds 102
                      ++v + y l++  ++ +     +++  ++S dL +W+ +  +l   ++ +  ++ + +  +  +++g   l yt ++k  +++++ +   a ++
      CTQ26886.1  45 FCQVAGRYHLFYQWNPLAcdhtyKCWGHWSSADLLHWRHEPIALMPDEEYD--RNGC-YSGSAVEFEGALTLCYTgNVKFPDGGRTAWQCLAtEN 136
                     5556666666665544334444499*************9997766555555..6777.*****************86667777777666655155 PP

                     TTS--EECEESSCS....TSSECEEEEEEETTSEEEEEEEEEHCCCSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTBBEEEEEEEEETTEE CS
  Glyco_hydro_43 103 peGpwsdpiklkts....gssgiDpslfedddGkkYlvwgqwdkreghseiylaeldddtlklkgektklikagtelkglkvtEGPhlykrdgyy 193
                     ++G++ +++ +        +   Dp++  +d G++Y+v g +d +++ + ++ +  d ++  l+ge + + ++g  ++ + + E P l+   ++ 
      CTQ26886.1 137 ADGTFRKLGPVLPLpegyTGHVRDPKVWRQD-GRWYMVLGAQDVQQRGKVLLFTASDLREWRLVGEIAGHDVNGL-ANAGYMWECPDLFPLADTH 229
                     66********9655899888999***98877.*********9999888888888888888888888888878777.6667777777777766666 PP

                     EEEE CS
  Glyco_hydro_43 194 YLla 197
                      L++
      CTQ26886.1 230 LLIC 233
                     5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3679.82
//
Query:       CTQ26887.1  [L=456]
Description: PTS system sucrose-specific EIIBC component (Includes: Sucrose-specific phosphotransferase enzyme IIB component; Sucrose permease IIC component) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-50  171.5  37.7    2.3e-50  171.5  37.7    1.9  2  PTS_EIIC      Phosphotransferase system, EIIC
    3.2e-13   48.9   0.0    7.4e-13   47.8   0.0    1.6  1  PTS_EIIB      phosphotransferase system, EIIB


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.5  37.7   2.5e-54   2.3e-50       1     324 []     110     395 ..     110     395 .. 0.94
   2 ?   -1.6   1.1      0.12     1e+03      59      68 ..     435     444 ..     396     454 .. 0.48

  Alignments for each domain:
  == domain 1  score: 171.5 bits;  conditional E-value: 2.5e-54
    PTS_EIIC   1 sdgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvl 99 
                 s++f+++ip+++a+G+l+gl        +++    g+++  + l+ +l+++++a+f +Lp+l+++++a ++  gg++++g++ + +l ++ l++a++v+
  CTQ26887.1 110 SNIFVPIIPAIVASGLLMGLLG------MVK--TYGWVDPSNALYIMLDMCSSAAFIILPILIGFTAAREF--GGNPYLGATLGGILTHPALTNAWGVA 198
                 699*******************......222..3689999*******************************..*******************9999999 PP

    PTS_EIIC 100 llaagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggs 198
                 +  +      +++++gi++ + g++g+++++lla+++++++ek +++ +P++l+ ++++ +++ii+++++ll++g++++ ++++i+  l++    l+++
  CTQ26887.1 199 AGFH------TMNFFGIEVAMIGYQGTVFPVLLAVWFMSMVEKRLRRVIPDALDLILTPFLTVIISGFIALLLIGPAGRALGDGISFILST----LISH 287
                 8888......579******************************************************************************....6677 PP

    PTS_EIIC 199 gsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvs..vmfGgpgatlalyiaaflekkskqkkllgsaaltp 295
                  ++l++l+fg+l+++++++G+Hh f+a+++ + +++s  +                  +f+   +++++++++ a+++++f++k  k k +++  a+ +
  CTQ26887.1 288 AGWLAGLLFGGLYSVIVITGIHHSFHAIEAGLLGNPSIGV------------------NFLLpiWAMANVAQGGACFAVWFKTKDAKIKAITLPSAF-S 367
                 77********************************888888..................5554569*******************8888888888888.8 PP

    PTS_EIIC 296 flfGItepleFgfpfvlnlllfipallag 324
                 +++GIte ++Fg+++++ ++ fi+al++g
  CTQ26887.1 368 AMLGITEAAIFGINLRFVKP-FIAALVGG 395
                 9*******************.****9987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.12
    PTS_EIIC  59 Lpllfaigia 68 
                 +++ fa++ a
  CTQ26887.1 435 MAIAFAVAFA 444
                 2333333333 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   8.2e-17   7.4e-13       2      34 .]       9      41 ..       8      41 .. 0.93

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 8.2e-17
                HHHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB  2 eIldalGGkdNIesvthCaTRLRltlkDaskvd 34
                 +l +lGGk+NI s++hCaTRLRl+l D++++d
  CTQ26887.1  9 SLLPLLGGKENIASAAHCATRLRLVLVDDALAD 41
                57889************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3715.64
//
Query:       CTQ26888.1  [L=505]
Description: Sucrose porin [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.2e-104  349.5  13.5   6.4e-104  348.9  13.5    1.3  1  LamB          LamB porin
    6.1e-19   67.7   6.1    6.1e-19   67.7   6.1    2.2  1  Sugarporin_N  Maltoporin periplasmic N-terminal extension
    0.00011   22.4   1.1    0.00032   20.9   1.1    1.8  1  XhlA          Haemolysin XhlA
      0.001   19.0   3.4     0.0016   18.4   3.4    1.2  1  SKA1          Spindle and kinetochore-associated protein 1
  ------ inclusion threshold ------
      0.011   14.7   0.4      0.011   14.7   0.4    1.6  2  Fmp27_WPPW    RNA pol II promoter Fmp27 protein domain
      0.022   15.2   0.5      0.035   14.5   0.5    1.2  1  CCDC53        Subunit CCDC53 of WASH complex
      0.041   13.7  14.4       0.06   13.2  14.4    1.1  1  ERM           Ezrin/radixin/moesin family
      0.049   14.0   6.1      0.078   13.4   6.1    1.2  1  DUF4200       Domain of unknown function (DUF4200)
      0.058   12.8  12.2      0.086   12.2  12.2    1.1  1  Tropomyosin   Tropomyosin
       0.11   11.8  13.9       0.18   11.1  13.9    1.2  1  HemX          HemX, putative uroporphyrinogen-III C-methyltra
       0.15   10.9   5.2       0.31    9.9   5.2    1.4  1  Spc7          Spc7 kinetochore protein
       0.25   11.6  10.7        0.7   10.2  10.7    1.7  1  ABC_tran_CTD  ABC transporter C-terminal domain
       0.27   11.5   4.6       0.63   10.4   4.6    1.6  1  BLOC1_2       Biogenesis of lysosome-related organelles compl
       0.32   10.3   8.3       0.51    9.7   8.3    1.2  1  GAS           Growth-arrest specific micro-tubule binding
          1    9.0   5.8        1.7    8.2   5.8    1.3  1  GrpE          GrpE
        1.3   10.1   4.1        2.6    9.1   3.7    1.8  1  Rotamase      PPIC-type PPIASE domain
        1.3    8.8   6.0          2    8.2   6.0    1.2  1  DUF724        Protein of unknown function (DUF724)
        1.5    8.1  14.8        2.8    7.2  14.8    1.4  1  DUF3450       Protein of unknown function (DUF3450)
          2    8.8  14.1        3.3    8.0  14.1    1.2  1  OmpH          Outer membrane protein (OmpH-like)
        2.1    7.6  10.0        3.4    6.9  10.0    1.2  1  DUF4407       Domain of unknown function (DUF4407)
        2.4    6.2   6.3        3.5    5.7   6.3    1.1  1  EzrA          Septation ring formation regulator, EzrA
        5.8    4.3  15.0        7.7    3.9  15.0    1.1  1  DUF3584       Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> LamB  LamB porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.9  13.5  7.9e-107  6.4e-104       1     379 []      97     505 .]      97     505 .] 0.91

  Alignments for each domain:
  == domain 1  score: 348.9 bits;  conditional E-value: 7.9e-107
                 EEEEEEEEEEEETTSSB--....----TT-S---.-TT---SEEEEEEEEEEEEEETTEEEEEEEEEEEEE-............-EEEEEEEEEET-ST CS
        LamB   1 FhGYaRsGvgvsseggeqk....cfqaggagsky.RLGnEcdtyaElklgkelekedgkkfkvdvmlayssdelkndstadesdlalrqayveaknlle 94 
                 FhGYaRsGv ++++ +++k    +++ag++g+   RLGn +dty+E++l+++ + ++g++ +++vm+a  + +++nd+ta++sdl++rqa+ve++nl +
  CTQ26888.1  97 FHGYARSGVIMNDSAASTKsgayMTPAGETGGAIgRLGNQADTYVEMNLEHKQTLDNGATTRFKVMVADGQ-TTYNDWTASSSDLNVRQAFVELGNLPT 194
                 9***********6666333368899999999988**********************************444.68************************9 PP

                 TST...T-EEEEEEE--S-E.EEGGGTEEEE---EEEEEEEEEE-SS.SEEEEEEEEEEEEEEEEC.EEEEEEEEEEEEEEEECCTTEEEEEEEEEEEE CS
        LamB  95 flp...eatlWaGkrfyrrn.dihilDfyywdlsGtGaGiedidlgd.gklslalvrsdesddssskkevsnnaldlrltgiklndggklelgldyara 188
                 f++   ++tlWaGkrf+r+n dih++D+++++l+GtG+Gi+d++++d ++ +++l++++++d      ++sn+++++ ++ +++   g ++++++ +ra
  CTQ26888.1 195 FEGpfkGSTLWAGKRFDRDNfDIHWIDSDVVFLAGTGGGIYDVKWNDsLRSNFSLYGRNFGDIA----DSSNSVQNYIVSMNNFA--GPVQMMVSGMRA 287
                 999999***************************************999************9955....799*************7..************ PP

                 E--T..........-TT---EEE..EEEEEEEEEETT...EEEEEEEEEEECCCTT-SS---TTE----....EEEEEEEEEEEEEETTTEEEEEEEEE CS
        LamB 189 nksd..........akkaakdgv..mltlehtqsflg...gfnklalqygtglgaenkgggsggelnnaaekdakslrlleqgvvqlsdkfslayavvy 272
                 +++d          + +aa++gv  +l l+++ sf+g   g++k+al yg+glgae kg+gs+g l       a+++r++++g+++lsd++ +a+av++
  CTQ26888.1 288 KDNDdrqdangnlvKGDAANTGVhaLLGLHNE-SFYGlrdGSSKTALLYGHGLGAEVKGIGSDGALR----PGANTWRFASYGTTPLSDRWFIAPAVLA 381
                 **************999******955555555.5999999**************************9....45************************** PP

                 EEEEE..TTS--EEEEEEEEEEEEECCTTEEEEEEEEEEEEE......E.......EEEEEEEEEEEES..SSSTT-SSEEEEEEEEEEEEESEEE... CS
        LamB 273 qksddrydngddkkwlsagvRpvykltdnfklllElgydrvk......k......gnlyKlTlaptlka..gsgfwsRPelRlfatyakwneaakd... 354
                 q+s+dry +gd+++w+++++R+++++t+nf+l+ E +y++++      +      g++yKlT+apt+k+   ++f+sRPe+R+++++++w++++++   
  CTQ26888.1 382 QSSKDRYVDGDSYQWATLNLRLIQEVTQNFALAWEGSYQYMDlqpegyNdrhavnGSFYKLTFAPTFKVgsIGDFFSRPEIRFYTSWMDWSKKLDNyan 480
                 ******************************************76665515666669*************8889***********************976 PP

                 ..TGGGSB-SS-EEEEEEEEEEEEEEE CS
        LamB 355 ..alskagakkgdtseltfGvqaEaWW 379
                   a   +++  ++ +e++fG+q+E+W+
  CTQ26888.1 481 ddA--LGSNGFKSGGEWSFGMQMETWF 505
                 432..23333355899**********9 PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   6.1   7.4e-22   6.1e-19       1      54 [.       2      55 ..       2      56 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 7.4e-22
  Sugarporin_N  1 MkkktlalaialllstaasvaaaasltiEaRLaaLEkrLqeAeqraqaAearak 54
                  +kk++la++iall++taa+++++++++iEaRLaaLEkrLq+Ae+ra++Ae+ra+
    CTQ26888.1  2 YKKRKLAILIALLTGTAAAHGQTDLNSIEARLAALEKRLQDAETRASTAESRAA 55
                  69**************************************************97 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   1.1   3.9e-07   0.00032       4      48 ..      24      68 ..      22      70 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.9e-07
        XhlA  4 erlerietkldnleervdkleekaaeaeekiknleedlkklesnq 48
                 +l+ ie++l  le+r+++ e +a++ae+++ ++e ++ +l+++q
  CTQ26888.1 24 TDLNSIEARLAALEKRLQDAETRASTAESRAASAEQKVQQLTQQQ 68
                689***************************************998 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   3.4   1.9e-06    0.0016      14      84 ..      15      85 ..       5      93 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.9e-06
                ..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXX CS
        SKA1 14 inqdpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlpkk 84
                +++  a  ++dl+ iea + ale+ l++ +++  + e+   ++++++++  +qq+++q + +++ ++  + 
  CTQ26888.1 15 TGTAAAHGQTDLNSIEARLAALEKRLQDAETRASTAESRAASAEQKVQQLTQQQQQTQATTQQVARRTTQL 85
                566777889**************************************************999998876554 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.4   1.3e-05     0.011     170     245 ..      23     102 ..      16     177 .. 0.82
   2 ?   -2.7   0.0       2.4   1.9e+03     289     306 ..     237     254 ..     236     267 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.3e-05
  Fmp27_WPPW 170 rvqkelleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesse........e 245
                 ++  + +e Rl+ le+++++ e++ +++e++  +     ++++++l+++ ++++   + + +  ++l+e++e+          +
  CTQ26888.1  23 QTDLNSIEARLAALEKRLQDAETRASTAESRAAS----AEQKVQQLTQQQQQTQATTQQVARRTTQLEEKAERPGgfefhgyaR 102
                 5677889************************999....7999999999999999999999999999999988655565555540 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.4
  Fmp27_WPPW 289 lkwnnslRnillrylhqv 306
                 +kwn+slR  +  y  ++
  CTQ26888.1 237 VKWNDSLRSNFSLYGRNF 254
                 69******9999887766 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.5   4.3e-05     0.035      18      77 ..      28      84 ..      23     131 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.3e-05
      CCDC53 18 ecEekLvevekrlqrleitlalLEakLsSip.gleeveaeaaeastsddnaarkgpppppp 77
                  E +L+ +ekrlq++e++ +  E++ +S++ ++++++++++++++++++     + ++++
  CTQ26888.1 28 SIEARLAALEKRLQDAETRASTAESRAASAEqKVQQLTQQQQQTQATTQQ----VARRTTQ 84
                46788888888888888888888888888764444444443333322222....2222222 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  14.4   7.4e-05      0.06      23      93 ..      21      91 ..      16      93 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.4e-05
         ERM 23 kaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaar 93
                  q +L+  e +   L+++++ ae+ a   e +aa ae++ q+l +++++++++ ++++r++++ e++a+r
  CTQ26888.1 21 HGQTDLNSIEARLAALEKRLQDAETRASTAESRAASAEQKVQQLTQQQQQTQATTQQVARRTTQLEEKAER 91
                5688999************************************************************9986 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   6.1   9.5e-05     0.078      42     105 ..      28      91 ..      22      96 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.5e-05
     DUF4200  42 eleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleeklee 105
                  +e +l+ ++k l++ + + + a+ +a++ +++ ++ +++ ++ +a ++++  + ++leek e+
  CTQ26888.1  28 SIEARLAALEKRLQDAETRASTAESRAASAEQKVQQLTQQQQQTQATTQQVARRTTQLEEKAER 91 
                 689999******************************************************9875 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2  12.2   0.00011     0.086       7      74 ..      23      90 ..      19      92 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
  Tropomyosin  7 eeeldeaeerlekakkkleeaekkaekaeaEvaalnrriqlleeelerteerleealekLeeaekaad 74
                 +++l+++e rl++++k+l+ ae +a  ae+ +a+ ++++q+l ++ ++t+   ++  ++ +++e++a+
   CTQ26888.1 23 QTDLNSIEARLAALEKRLQDAETRASTAESRAASAEQKVQQLTQQQQQTQATTQQVARRTTQLEEKAE 90
                 67899999**********************************99999999999999999888888886 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  13.9   0.00022      0.18      10      92 ..       7      88 ..       3      93 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00022
        HemX 10 lallvalavgaglyylgqqqvqeltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleel 92
                la+l+al  g +++ +gq   ++ +a+ a+l+++l+  e+ ++++e+ +++ ++  ++l q++++++a++++++  + qlee 
  CTQ26888.1  7 LAILIALLTG-TAAAHGQTDLNSIEARLAALEKRLQDAETRASTAESRAASAEQKVQQLTQQQQQTQATTQQVARRTTQLEEK 88
                7888888855.788999999977777777777777777777777666666666666666666666666666666666666554 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   5.2   0.00038      0.31     198     258 ..      23      83 ..      12      95 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00038
        Spc7 198 keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervle 258
                 +++L+++  +la+l++ ++  +++ ++ +++ ++ e+k+++l++q +++++ +++  r + 
  CTQ26888.1  23 QTDLNSIEARLAALEKRLQDAETRASTAESRAASAEQKVQQLTQQQQQTQATTQQVARRTT 83 
                 5556666666666666666666666666666666666666666666666666555444333 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  10.7   0.00085       0.7       7      63 ..      23      81 ..      20      91 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00085
  ABC_tran_CTD  7 qreleeleaeIeaLEeeiaeleaeladpelysdp..eklaelsaeleeleaeLeelyer 63
                  q  l  +ea+++aLE+++++ e++ + +e  + +  +k+++l++++++ +a  ++   r
    CTQ26888.1 23 QTDLNSIEARLAALEKRLQDAETRASTAESRAASaeQKVQQLTQQQQQTQATTQQVARR 81
                  6678999***************9999999874444699999999999999887765555 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.6   0.00077      0.63      12      79 ..      23      87 ..      15      91 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00077
     BLOC1_2 12 eaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLee 79
                + +l++  + +  Lek  + a+++    +++aas+e+k+++l +++++ q   qq+ +   ++t+Lee
  CTQ26888.1 23 QTDLNSIEARLAALEKRLQDAETRASTAESRAASAEQKVQQLTQQQQQTQATTQQVAR---RTTQLEE 87
                6789999999999************************************999998864...5555555 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   8.3   0.00062      0.51      85     149 ..      24      87 ..      17      91 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00062
         GAS  85 qslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknllLek 149
                  +l++++arl  lek l+d +  +   e r +++e++ ++l+++++++  ++qq +  + + Le 
  CTQ26888.1  24 TDLNSIEARLAALEKRLQDAETRASTAESRAASAEQKVQQLTQQQQQTQATTQQVAR-RTTQLEE 87 
                 678999999999999999999999999999999999999999999998777777654.4444444 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.8    0.0021       1.7       5      57 ..      38      90 ..      27      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0021
                ..CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHH CS
        GrpE  5 eeeeeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeak 57
                ++ +++e++  + e++ +++e++v++l+++ ++++a  +++ +rt +  e+a+
  CTQ26888.1 38 KRLQDAETRASTAESRAASAEQKVQQLTQQQQQTQATTQQVARRTTQLEEKAE 90
                5667788888899999999**************************99888876 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.7    0.0032       2.6      10      83 ..      49     122 ..      33     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0032
                 E----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S- CS
    Rotamase  10 asekeraeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisep 83 
                 + e   a a++k++++ +q ++ ++t +++Ar+  + +++a++ G   +         +++ a+s k+G + +p
  CTQ26888.1  49 TAESRAASAEQKVQQLTQQQQQTQATTQQVARRTTQLEEKAERPGGFEFHGYARSGVIMNDSAASTKSGAYMTP 122
                 455667788**************************99999*****99988888888888888888888888777 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.0    0.0025         2     103     168 ..      25      90 ..      19      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0025
      DUF724 103 eqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseae 168
                 + ++++ ++ +lek+++++e++ + +e+  +  e+k+++l +q++++++  ++ +++  +l+ +ae
  CTQ26888.1  25 DLNSIEARLAALEKRLQDAETRASTAESRAASAEQKVQQLTQQQQQTQATTQQVARRTTQLEEKAE 90 
                 56678889999**********************************999999999999999988876 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  14.8    0.0034       2.8       4      81 ..       9      89 ..       6      91 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0034
     DUF3450  4 llalllasgal...aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqei 81
                +l++ll+++a+   +++l+++++  ++  +  ++++++ +  +  +++ ++++++l+++++++++  +q++r  +++e++ 
  CTQ26888.1  9 ILIALLTGTAAahgQTDLNSIEARLAALEKRLQDAETRASTAESRAASAEQKVQQLTQQQQQTQATTQQVARRTTQLEEKA 89
                444444444444688899999999999999999999999999999999999999999999999999999999988888776 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  14.1    0.0041       3.3      32      90 ..      23      85 ..      15      92 .. 0.46

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0041
                HHHHHHHHHHHHHHHHHHHHHTTTS..-HHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHH CS
        OmpH 32 qaeleakekelqklqeelqkkakkl.ekeekeqelqkkeqelqqkqqqka...qelqkkqqel 90
                q++l++ e+ l +l+++lq+++  + + e ++   ++k+q+l q+qqq++   q+++++  +l
  CTQ26888.1 23 QTDLNSIEARLAALEKRLQDAETRAsTAESRAASAEQKVQQLTQQQQQTQattQQVARRTTQL 85
                455555555555555555544333322333333355555555554444443334444444433 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  10.0    0.0042       3.4     182     250 ..      16      85 ..      12      97 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0042
     DUF4407 182 gpaakekkaqldaaqaelaelkakld........atarlaalraelaeleaerakeraasqaaaaaddGllarleal 250
                 g+aa + +++l+ ++a+la+l+++l+        a++r a+++++ ++l++++++++a++q+       ++ r++ l
  CTQ26888.1  16 GTAAAHGQTDLNSIEARLAALEKRLQdaetrastAESRAASAEQKVQQLTQQQQQTQATTQQ-------VARRTTQL 85 
                 56666777777778888888888877744433444444444444444444444444444444.......44444444 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.3    0.0043       3.5     350     415 ..      23      88 ..      17      91 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0043
                 HHHHHHHHHHHHHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EzrA 350 ekelkelekdyeeleekleekkvaYSelqeeleeleekleeieekqeeileslkslrkdEkrAreq 415
                 +++l+++e+++  le++l++ ++  S+ +++  ++e+k++++ ++q++++ + ++  +  ++ +e+
  CTQ26888.1  23 QTDLNSIEARLAALEKRLQDAETRASTAESRAASAEQKVQQLTQQQQQTQATTQQVARRTTQLEEK 88 
                 678899999999999999999999999999999999999999999999998888877666665555 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  15.0    0.0095       7.7     603     664 ..      28      89 ..      17      92 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0095
     DUF3584 603 eLrerlqaleealqsaeakqkqaeeelkqlnaeleeakravaeaatalknardtlerlqnek 664
                  +++rl+ale+ lq+ae +++ ae+++++++++++++ ++ ++ +++ ++   +  +l+++ 
  CTQ26888.1  28 SIEARLAALEKRLQDAETRASTAESRAASAEQKVQQLTQQQQQTQATTQQVARRTTQLEEKA 89 
                 68889999999999999999999999999999999988888888888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2634  (0.146913); expected 358.6 (0.02)
Passed bias filter:                     1463  (0.0815996); expected 358.6 (0.02)
Passed Vit filter:                       304  (0.0169558); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.40
# Mc/sec: 3754.72
//
Query:       CTQ26889.1  [L=307]
Description: Fructokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-75  253.1   0.0    3.9e-75  253.0   0.0    1.0  1  PfkB      pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.0   0.0   2.2e-79   3.9e-75       3     300 ..       4     298 ..       2     300 .. 0.97

  Alignments for each domain:
  == domain 1  score: 253.0 bits;  conditional E-value: 2.2e-79
                 EEEEEEEEEEEEEEECSSHTTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTTS CS
        PfkB   3 kvvviGealidliavseklegelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvdedg 101
                 k++v+G+a++dl ++ e+         ++ + +GGa+aNvAv++arlg+d+ fig+vGdD+fG+f++++l++e+vd++y++ d+ +rt++ ++ +d++g
  CTQ26889.1   4 KIWVLGDAVVDLLPDGEG---------RLLQCPGGAPANVAVGVARLGGDSGFIGRVGDDPFGRFMRHTLAQEQVDVNYMRLDAAQRTSTVVVDLDSHG 93 
                 899***********9987.........************************************************************************ PP

                 EEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEES..EECTTSHHHHHHHHHHHHHHTTE..EEEEECESSSHH...HHHHHHHHHCTESEEEEEHHH CS
        PfkB 102 ertivfnrgaaadltkeeleededlleeadllyisg..llsselpeavleelaeaaknggt..fdpnlldplgaq...fkeallellaladllkpneeE 193
                 ert++f   ++adl  ++  ed++ ++++++l++++  l  +++++++++++++++++gg+  fdpn++++l+++    +++l+++lalad++k++eeE
  CTQ26889.1  94 ERTFTFMVRPSADLFLQP--EDLPPFAAGQWLHVCSiaLSAEPSRSTTFAAMEAIKRAGGYvsFDPNIRSDLWQDpqdLRDCLDRALALADAIKLSEEE 190
                 ****************97..5****************99999********************************************************* PP

                 HHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHT......THHHHHHHHHHHHHH CS
        PfkB 194 lealtgekledieealaalhklkakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaalle......gksleealrfanavA 286
                 l++++g++  di + +a+l++    ++++++vt+Gk G++++ +++++++pa ++v +vDttGAGD+fv+g+la+l++       + l+  l++a++++
  CTQ26889.1 191 LAFISGSD--DIVSGIARLNA--RFQPTLLLVTQGKAGVQAALRGQVSHFPA-RPVVAVDTTGAGDAFVAGLLAGLAAhgipdnLAALAPDLALAQTCG 284
                 ********..*********99..5666*************************.77**************************99999************* PP

                 HHHHTSSSSSTCSC CS
        PfkB 287 alvvqkkgaiaslp 300
                 al+++ kga+++lp
  CTQ26889.1 285 ALATTAKGAMTALP 298
                 **********9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2405.56
//
Query:       CTQ26890.1  [L=255]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-15   54.3   0.2    1.7e-14   53.6   0.2    1.4  1  HTH_46    Winged helix-turn-helix DNA binding
    0.00053   20.3   0.0      0.001   19.4   0.0    1.4  1  Rrf2      Transcriptional regulator
     0.0041   17.0   0.0     0.0076   16.1   0.0    1.4  1  TrmB      Sugar-specific transcriptional regulator TrmB
  ------ inclusion threshold ------
      0.026   14.4   0.0      0.084   12.8   0.0    1.8  2  MarR_2    MarR family
      0.068   13.0   0.0          2    8.4   0.0    2.6  2  HTH_5     Bacterial regulatory protein, arsR family
      0.068   13.1   0.0       0.16   11.9   0.0    1.5  1  HTH_11    HTH domain
       0.13   12.4   0.2        0.3   11.2   0.2    1.6  1  HTH_7     Helix-turn-helix domain of resolvase
       0.14   12.0   0.0       0.33   10.8   0.0    1.6  1  HTH_IclR  IclR helix-turn-helix domain
       0.17   12.0   0.0        0.4   10.7   0.0    1.6  1  HTH_29    Winged helix-turn helix
       0.19   11.3   0.1        0.4   10.3   0.1    1.6  1  HTH_24    Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> HTH_46  Winged helix-turn-helix DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.2   9.2e-18   1.7e-14      21      68 .]     205     253 ..     184     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 9.2e-18
      HTH_46  21 eninvlkyIqkrtnLSrSsimkvLseLkkggyIeierGkLvki.nkLPe 68 
                 ++ +   +I krtnLSrS++ +vL++L++ggyI++++GkL++i +++Pe
  CTQ26890.1 205 QHESLSAFIIKRTNLSRSYVYQVLAALREGGYITVKKGKLISIdRHIPE 253
                 5556788************************************999996 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.7e-07     0.001      26      61 ..     208     243 ..     195     244 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.7e-07
                 B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
        Rrf2  26 vsseeiaerqnispsylekilakLrkaglvksvrGk 61 
                   s+ i +r+n+s+sy+ ++la Lr+ g++++++Gk
  CTQ26890.1 208 SLSAFIIKRTNLSRSYVYQVLAALREGGYITVKKGK 243
                 5578899****************************7 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.2e-06    0.0076      28      58 ..     213     243 ..     207     255 .] 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.2e-06
                 HCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB  28 iaeelgvprskvYevLrsLedkGlVerekgr 58 
                 i ++++++rs vY+vL  L + G+++++kg+
  CTQ26890.1 213 IIKRTNLSRSYVYQVLAALREGGYITVKKGK 243
                 67899***********************998 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       5.2   9.3e+03      22      34 ..     141     153 ..     131     159 .. 0.67
   2 ?   12.8   0.0   4.7e-05     0.084      27      56 ..     213     242 ..     204     243 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.2
                 EEHHHHHHHHTSS CS
      MarR_2  22 ltvgelarrlgls 34 
                 +t+++ +r + +s
  CTQ26890.1 141 ITASDFERIFFHS 153
                 6888888866555 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.7e-05
                 HHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2  27 larrlglsksavsrilkrLvaaGLverrpg 56 
                 + +r++ls+s+v ++l+ L + G+++ ++g
  CTQ26890.1 213 IIKRTNLSRSYVYQVLAALREGGYITVKKG 242
                 789**********************98765 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.14   2.5e+02       2      18 ..      17      33 ..      17      35 .. 0.86
   2 ?    8.4   0.0    0.0011         2      21      46 ..     213     238 ..     213     239 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.14
                HHHHHHHHHHTTSSEEH CS
       HTH_5  2 ptRlkILklLaegelcv 18
                ptRl I++++a +++ v
  CTQ26890.1 17 PTRLGIVQQVAVSPAAV 33
                8*******999888766 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0011
                 HHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  21 laeelglsqstvShHLkkLreaGLVe 46 
                 + + ++ls+s v + L++Lre G+++
  CTQ26890.1 213 IIKRTNLSRSYVYQVLAALREGGYIT 238
                 56789******************996 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.9e-05      0.16      19      51 ..     211     242 ..     207     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.9e-05
      HTH_11  19 eeLAeeLnvSrrtvrrdIkaLeelgvpIesepg 51 
                 +++ +++n+Sr+ v++ ++aL+e g  I+ ++g
  CTQ26890.1 211 AFIIKRTNLSRSYVYQVLAALREGG-YITVKKG 242
                 57889*******************9.6666665 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00017       0.3      27      44 ..     213     230 ..     211     231 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
                 TSSSS---SSSS--SS-- CS
       HTH_7  27 IAkevnisRsTvYRylad 44 
                 I k++n+sRs vY++la+
  CTQ26890.1 213 IIKRTNLSRSYVYQVLAA 230
                 88**************97 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00018      0.33      24      49 ..     213     238 ..     206     240 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
                 HHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  24 lArrtglpkStvhRlLqtLvelGyve 49 
                 + +rt l++S v+  L+ L e Gy++
  CTQ26890.1 213 IIKRTNLSRSYVYQVLAALREGGYIT 238
                 6689********************86 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00022       0.4      18      40 ..     213     235 ..     208     245 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00022
      HTH_29  18 iAkllglsrrtvyrwlkrfeegG 40 
                 i k+++lsr++vy +l + +egG
  CTQ26890.1 213 IIKRTNLSRSYVYQVLAALREGG 235
                 6799******************9 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00022       0.4      23      48 .]     213     238 ..     213     238 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00022
      HTH_24  23 LAerlglSpstvnrrlkrLeeeGlIk 48 
                 + +r++lS+s v + l  L e G+I+
  CTQ26890.1 213 IIKRTNLSRSYVYQVLAALREGGYIT 238
                 679**********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 2334.56
//
Query:       CTQ26891.1  [L=114]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-37  126.7   8.9    3.6e-37  126.4   8.9    1.1  1  DUF3302   Protein of unknown function (DUF3302)
  ------ inclusion threshold ------
      0.011   16.0   1.0      0.032   14.6   0.2    1.9  2  CbiX      CbiX
      0.049   13.6   0.1       0.11   12.5   0.1    1.5  1  TraQ      Type-F conjugative transfer system pilin chaperone 
      0.062   13.3   0.3      0.097   12.6   0.3    1.2  1  DUF4298   Domain of unknown function (DUF4298)


Domain annotation for each model (and alignments):
>> DUF3302  Protein of unknown function (DUF3302)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   8.9   7.9e-41   3.6e-37       1      76 [.       3      78 ..       3      79 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 7.9e-41
     DUF3302  1 lDylalivlivvvlvlvygiivlhdiPyeiakrRnhPhadaihvagWvsLltlfvlWPllliWatlykpergwgle 76
                lDy+al++li v+l+l+yg+iv+hdiPyeiak+R hPh+daih agWvsL+tl++lWPll+iWatl+++++gwg++
  CTQ26891.1  3 LDYVALAILIAVALILFYGVIVIHDIPYEIAKERRHPHQDAIHYAGWVSLFTLHALWPLLWIWATLWREDHGWGMR 78
                8*************************************************************************97 PP

>> CbiX  CbiX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   7.1e-06     0.032      56      93 ..      12      48 ..       6      53 .. 0.86
   2 ?   -0.2   0.0      0.27   1.2e+03      11      21 ..      90     100 ..      73     112 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.1e-06
                EEEEESSSSSHHHHTHHHHHCT--SSSS-TTEEEEE-- CS
        CbiX 56 vvvPlflfaGvhvkeDIpeeleeaeeahpkdveieyte 93
                ++v l lf Gv v +DIp+e++++++++  +  i+y+ 
  CTQ26891.1 12 IAVALILFYGVIVIHDIPYEIAKERRHPH-QDAIHYAG 48
                678899*****************888877.88899986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.27
                 HHHHHHHHHHH CS
        CbiX  11 eveklaeelre 21 
                 ++e+++++l++
  CTQ26891.1  90 RLETVVQQLEQ 100
                 23333333332 PP

>> TraQ  Type-F conjugative transfer system pilin chaperone (TraQ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.4e-05      0.11      40      78 ..       6      44 ..       4      48 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.4e-05
        TraQ 40 vllaeilavglvliGgyrildaliarvadeerallkaae 78
                v la ++av+l+l+ g  ++  +  ++a+e+r + ++a 
  CTQ26891.1  6 VALAILIAVALILFYGVIVIHDIPYEIAKERRHPHQDAI 44
                57999*****************************99985 PP

>> DUF4298  Domain of unknown function (DUF4298)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   2.2e-05     0.097       4      36 ..      77     109 ..      76     110 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH CS
     DUF4298   4 mekildeisallqqLeealeqwkklqkklakLd 36 
                 m  i de++al+q Le +++q++++q++++ L+
  CTQ26891.1  77 MRHIADEQQALHQRLETVVQQLEQVQREVDVLK 109
                 78899***********************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1724  (0.0961571); expected 358.6 (0.02)
Passed bias filter:                      977  (0.0544927); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 837.00
//
Query:       CTQ26892.1  [L=380]
Description: hypothetical protein CH1034_140037 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-11   43.4   0.2    2.3e-11   43.4   0.2    2.8  3  Biotin_lipoyl_2  Biotin-lipoyl like
    1.8e-09   37.2   4.2    3.7e-07   29.6   4.2    3.1  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    6.8e-08   33.2   2.6     0.0025   18.5   0.2    2.9  3  HlyD_3           HlyD family secretion protein
     0.0052   16.6   0.0     0.0093   15.8   0.0    1.6  1  HlyD             HlyD membrane-fusion protein of T1SS
     0.0078   16.0   0.0       0.19   11.6   0.0    2.5  2  Biotin_lipoyl    Biotin-requiring enzyme
       0.01   15.3   5.6      0.021   14.2   5.6    1.5  1  DUF4407          Domain of unknown function (DUF4407)
  ------ inclusion threshold ------
      0.011   15.8   0.1      0.065   13.3   0.2    2.0  2  DUF4715          Domain of unknown function (DUF4715)
      0.017   14.3   0.1      0.021   14.0   0.1    1.1  1  Taxilin          Myosin-like coiled-coil protein
       0.39    8.2   9.1       0.54    7.7   9.1    1.1  1  DUF3584          Protein of unknown function (DUF3584)
          1    9.1   4.9         14    5.4   0.2    2.3  2  Lectin_N         Hepatic lectin, N-terminal domain
        1.7    9.0  16.8        3.3    8.1  16.8    1.4  1  HrpB7            Bacterial type III secretion protein (HrpB7)
          2    8.6   5.2       0.64   10.2   0.8    2.0  2  IFT20            Intraflagellar transport complex B, subunit 
        8.6    6.9   9.0    3.5e+02    1.7   9.0    2.2  1  APG6_N           Apg6 coiled-coil region
        9.2    6.0  18.0       0.68    9.7   2.1    2.2  2  OEP              Outer membrane efflux protein


Domain annotation for each model (and alignments):
>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.2   1.8e-14   2.3e-11       2      50 .]      63     111 ..      59     111 .. 0.97
   2 ?    0.5   0.4      0.41   5.3e+02      38      49 ..     120     131 ..     116     132 .. 0.82
   3 ?   -2.2   0.0       2.9   3.7e+03      30      44 ..     205     219 ..     204     229 .. 0.67

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 1.8e-14
  Biotin_lipoyl_2   2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50 
                      +v+I ++v GrV ++ Vk +q  ++GdvL++lD++ +q++++ ++aq++
       CTQ26892.1  63 TVPIVSQVRGRVQSVPVKPNQMLHKGDVLFTLDPTPFQAKVDDLQAQIK 111
                      699********************************************97 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.41
  Biotin_lipoyl_2  38 lqlalaqaeaql 49 
                      l++al+qa+a l
       CTQ26892.1 120 LNAALSQAQAEL 131
                      679*******87 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.9
  Biotin_lipoyl_2  30 LaelDsralqlalaq 44 
                      La+l + ++ql+   
       CTQ26892.1 205 LAQLQKAQFQLENTV 219
                      666666666665555 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   4.2   2.9e-10   3.7e-07      18     189 ..      62     303 ..      55     306 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.9e-10
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................................................ CS
    HlyD_D23  18 rlarvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalk................................................ 68 
                 r++ + ++v G+v+++ v+   +  +kG+ L++l+ + + a  +++ +  k                                                
  CTQ26892.1  62 RTVPIVSQVRGRVQSVPVK-PNQMLHKGDVLFTLDPTPFQAKVDDLQAQIKaasqdalslnaalsqaqaelsravaqrdqsrreyaryreghaqgafsd 159
                 5677899************.******************9999999999988888999999999999988888888777777666666666666666666 PP

                 ..........XXXXXXXX...........XXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXX CS
    HlyD_D23  69 ..........akkklkkke..........lleaarerLrll.....gvseeqiaelektgkvqktvtvkapisGvVteknvreGqyvq.....pgdtlf 137
                           +                  ++ +ar+ L ++        ++ +a+l+k +   +++ v+ap +G+V +  +r G + +     p +t +
  CTQ26892.1 160 qmvdtrlqtwK-------AdeasvsaaqaKVVQARNALDSVvkgknTTVASLLAQLQKAQFQLENTVVRAPEDGYVSTVGLRPGTMSTalgmiPLMTFV 251
                 55555555551.......05555555666888888888765222112234668899999999999*******************997522222567888 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 138 tiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyptvd 189
                  +    +   +a+  ++ l+++++g+++e+ ++a+pg+ f+G+v+ ++p + 
  CTQ26892.1 252 PVEGAASREYVAAFRQNALQRLHKGEPAELMFPAIPGTVFRGEVADVLPAIG 303
                 8999989899999***********************************9875 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2     2e-06    0.0025       2      54 ..      66     124 ..      65     142 .. 0.83
   2 ?   -2.0   0.1       4.6   5.9e+03      55      76 ..     180     201 ..     169     216 .. 0.49
   3 !   14.0   0.0   4.9e-05     0.063       1      82 [.     219     304 ..     219     351 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2e-06
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiip.....p.dtllveakvpaadlgsikkkg 54 
                 + + v G+v++++v++++++ +gd+l+++ p     + d+l++++k +++d+ s++ + 
  CTQ26892.1  66 IVSQVRGRVQSVPVKPNQMLHKGDVLFTLDPtpfqaKvDDLQAQIKAASQDALSLNAAL 124
                 6899***************************9999855899999999999988886444 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.6
      HlyD_3  55 qkvtlkldqgsdytlkgkieri 76 
                 q+  +++ +  d ++kgk + +
  CTQ26892.1 180 QAKVVQARNALDSVVKGKNTTV 201
                 3333333333333444443333 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 4.9e-05
      HlyD_3   1 tlrApvdGvvvelnveegevvqagde..lleiip...pdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvda 82 
                 ++rAp dG v+ + +++g + +a     l++ +p    ++ +  a+  + +l++++ kg +++l++   ++ + +g++  + p +++
  CTQ26892.1 219 VVRAPEDGYVSTVGLRPGTMSTALGMipLMTFVPvegAASREYVAAFRQNALQRLH-KGEPAELMFPAIPGTVFRGEVADVLPAIGE 304
                 69*****************977644447******7655666788888999999997.**********99999*********998865 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.2e-06    0.0093       4      66 ..      41     355 ..      32     369 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.2e-06
                 EEEEEEEEE.......................................................................................... CS
                 xxxxxxxxx.......................................................................................... RF
        HlyD   4 vfvawaala.......................................................................................... 12 
                 ++v++ +++                                                                                          
  CTQ26892.1  41 GAVIFGMNYnfpytdvgnqvfrtvpivsqvrgrvqsvpvkpnqmlhkgdvlftldptpfqakvddlqaqikaasqdalslnaalsqaqaelsravaqrd 139
                 555555555666666666666666666666666666666666666666666667777777777777777777777777777777777777777777777 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  CTQ26892.1 140 qsrreyaryreghaqgafsdqmvdtrlqtwkadeasvsaaqakvvqarnaldsvvkgknttvasllaqlqkaqfqlentvvrapedgyvstvglrpgtm 238
                 777777777777777777777777777777777777777777777777778888888888888888888888888888888888888888888888888 PP

                 ............................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSB................................. CS
                 ............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF
        HlyD  13 ............................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispd................................. 50 
                                             ++ l++++ g p+e++f A p+t    f g+V+ + p+                                 
  CTQ26892.1 239 stalgmiplmtfvpvegaasreyvaafrQNALQRLHKGEPAELMFPAIPGT---VFRGEVADVLPAigesqfqgqgkllttdalnthgralvvlkvtdp 334
                 8888888888888888888888888888***********************...899999999988888888888888888888888877777777777 PP

                 .....EEEEEEEEEEEETTEE CS
                 .....xxxxxxxxxxxxxxxx RF
        HlyD  51 .....rvpvrvvvekaqgpyy 66 
                      ++p++ ++e a+++++
  CTQ26892.1 335 rfaeyALPQGATLEAAVYSDH 355
                 777777777777777777766 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00015      0.19      43      73 .]      64      94 ..      62      94 .. 0.94
   2 ?    1.5   0.0      0.21   2.7e+02      43      61 ..     218     236 ..     214     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
                   EEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 43 meieapkaGvvkeilvkeGdtvevgdllaki 73
                   ++i ++++G+v+++ vk +++++ gd+l+++
     CTQ26892.1 64 VPIVSQVRGRVQSVPVKPNQMLHKGDVLFTL 94
                   689*************************986 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.21
                    EEEEBSSSEEEEEESSTTT CS
  Biotin_lipoyl  43 meieapkaGvvkeilvkeG 61 
                    + + ap++G+v+ +    G
     CTQ26892.1 218 TVVRAPEDGYVSTVGLRPG 236
                    5799*******99876555 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   5.6   1.7e-05     0.021     131     223 ..      99     212 ..      68     226 .. 0.49

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.7e-05
     DUF4407 131 ltaelaeleaqia..............alqaeidaaearldalraeaqkeldgtk.........gtgttgvaGkgpaakekkaqldaaqaelaelkakl 206
                 ++a++++l+aqi+              ++qae++ a a++d+ r+e+++  +g            t+ +  + ++++  +++a+  +a+++l+++ +  
  CTQ26892.1  99 FQAKVDDLQAQIKaasqdalslnaalsQAQAELSRAVAQRDQSRREYARYREGHAqgafsdqmvDTRLQTWKADEASVSAAQAKVVQARNALDSVVKG- 196
                 56666666666661111111111111155555555555555555555544444444444333332222223333333333444444444444444444. PP

     DUF4407 207 datarlaalraelaele 223
                  +++++a+l a+l++++
  CTQ26892.1 197 -KNTTVASLLAQLQKAQ 212
                 .5555555555554444 PP

>> DUF4715  Domain of unknown function (DUF4715)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   5.1e-05     0.065      51     113 ..      99     160 ..      92     172 .. 0.87
   2 ?   -0.7   0.0       1.1   1.4e+03      62      79 ..     262     279 ..     236     283 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.1e-05
     DUF4715  51 llqkvagvqreledfkkealkaihrledaycemsralveqeeqaarvkqrlreeedrgivrnk 113
                 ++ kv  +q +++   ++al     l +a  e+sra++ q +q+ r   r re   +g   ++
  CTQ26892.1  99 FQAKVDDLQAQIKAASQDALSLNAALSQAQAELSRAVA-QRDQSRREYARYREGHAQGAFSDQ 160
                 6789********************************87.5689**********9999977665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.1
     DUF4715  62 ledfkkealkaihrleda 79 
                 +  f+++al+ +h+ e a
  CTQ26892.1 262 VAAFRQNALQRLHKGEPA 279
                 5689*********98765 PP

>> Taxilin  Myosin-like coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.7e-05     0.021     108     219 ..      99     216 ..      96     275 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
     Taxilin 108 fqakLkdiqaqieekserneklreenaelteKlkslieqye........lreehfekllktkelelqlaeaKlqqadallkeeqekkkrekeyllkeak 198
                 fqak+ d+qaqi++ s++  +l     + ++ l+  ++q +         re h +  +  +   + l++ K ++a++  +++q k  + +++l + +k
  CTQ26892.1  99 FQAKVDDLQAQIKAASQDALSLNAALSQAQAELSRAVAQRDqsrreyarYREGHAQGAFSDQMVDTRLQTWKADEASV--SAAQAKVVQARNALDSVVK 195
                 9*********************99999999999999999997777777788888888888888888888888866555..6666666666666678888 PP

     Taxilin 199 eltkkvkalketekelkeqln 219
                  ++++v +l  + ++ + ql+
  CTQ26892.1 196 GKNTTVASLLAQLQKAQFQLE 216
                 888888888888888888886 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   9.1   0.00043      0.54     419     532 ..     104     218 ..      96     226 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00043
     DUF3584 419 ealealesqlrkqleaqkeelneeekelesrlselklrldsatateEeleqieeadealekaqeelekaeaevealqaeeeqlrkkrdeade.alqkae 516
                 ++l+a+ ++  +     +++l+++++el +++++ ++ +++     E   q + +d+ ++   +++++ ea+v+a+qa+  q+r++ d   + + +  +
  CTQ26892.1 104 DDLQAQIKAASQDALSLNAALSQAQAELSRAVAQRDQSRREYARYREGHAQGAFSDQMVDTRLQTWKADEASVSAAQAKVVQARNALDSVVKgKNTTVA 202
                 567777777777777888999999999999999999999999999999999********************************9999997661455566 PP

     DUF3584 517 rrleqlrqaleeleeq 532
                   l ql++a  +le+ 
  CTQ26892.1 203 SLLAQLQKAQFQLENT 218
                 6678888888888765 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2     0.011        14      72     106 ..     100     134 ..      95     138 .. 0.90
   2 ?    5.1   0.7     0.014        18      69     104 ..     181     216 ..     158     220 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.011
    Lectin_N  72 laeiqalssqggslsekvtsleaklekkqqdlkad 106
                 +a++ +l++q + +s+   sl+a l + q++l+  
  CTQ26892.1 100 QAKVDDLQAQIKAASQDALSLNAALSQAQAELSRA 134
                 68999**************************9865 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.014
    Lectin_N  69 sstlaeiqalssqggslsekvtsleaklekkqqdlk 104
                 +++    +al+s  +  + +v+sl a+l+k q +l+
  CTQ26892.1 181 AKVVQARNALDSVVKGKNTTVASLLAQLQKAQFQLE 216
                 3333344578889999999************99886 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  16.8    0.0026       3.3      18     131 ..     104     216 ..     100     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0026
       HrpB7  18 erlraeleaaraalaaaeaalaaaqaqveaardavraheerlddlttgss..pfsiadylacrayrdvlegrvraaeaelaaarqaldaaedavaatar 114
                 + l+a+++aa ++  +++aal +aqa++++a ++ ++ +++ +    g +  +fs + + +     ++ e+ v aa+a++++ar+ald     v+ +++
  CTQ26892.1 104 DDLQAQIKAASQDALSLNAALSQAQAELSRAVAQRDQSRREYARYREGHAqgAFSDQMVDTRLQTWKADEASVSAAQAKVVQARNALDS---VVKGKNT 199
                 6799***********************99987666666666666655554113666655555455556677899999999999999986...689**** PP

       HrpB7 115 kiaRndaqidacrerie 131
                 ++a+++aq+++ + ++e
  CTQ26892.1 200 TVASLLAQLQKAQFQLE 216
                 **********9987765 PP

>> IFT20  Intraflagellar transport complex B, subunit 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.3      0.85   1.1e+03      70     103 ..     106     139 ..      99     154 .. 0.67
   2 ?   10.2   0.8    0.0005      0.64      41      98 ..     161     218 ..     156     222 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.85
       IFT20  70 lkseakqreaeqqqlqaliaekkaeleRlrvele 103
                 l+++ k+  ++   l+a +++ +ael R  ++ +
  CTQ26892.1 106 LQAQIKAASQDALSLNAALSQAQAELSRAVAQRD 139
                 3444455555556677777777777777766654 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0005
       IFT20  41 lvkelievleelakkvekeKlkAigarnllkseakqreaeqqqlqaliaekkaeleRl 98 
                 +v++ +++ +    +v  ++ k + arn+l+s+ k +++  + l a++++ + +le+ 
  CTQ26892.1 161 MVDTRLQTWKADEASVSAAQAKVVQARNALDSVVKGKNTTVASLLAQLQKAQFQLENT 218
                 5666677777777889999*************************************85 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   9.0      0.28   3.5e+02      62     111 ..     102     151 ..      95     215 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.28
      APG6_N  62 eeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqle 111
                 + ++l++++k++ +   +l+a+l+++++el++  ++ ++  rey  ++  
  CTQ26892.1 102 KVDDLQAQIKAASQDALSLNAALSQAQAELSRAVAQRDQSRREYARYREG 151
                 45567777777777777777777777777777777777777777665544 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   8.3      0.16     2e+02     145     185 ..     108     147 ..     100     150 .. 0.68
   2 ?    9.7   2.1   0.00053      0.68      75     125 ..     166     216 ..     162     219 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.16
         OEP 145 ykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLey 185
                 ++  ++s+ d l+  + l+qa+ael  a +q+ ++r ++++
  CTQ26892.1 108 AQIKAASQ-DALSLNAALSQAQAELSRAVAQRDQSRREYAR 147
                 44445666.77777777777777777777777777776654 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00053
         OEP  75 lfdggkrrarvkaakaqleaaeaqleqarqqlrlevaqaylqlllakeqle 125
                 l ++ + +a+v aa+a++ +a++ l+ ++    + va++++ql++a+ qle
  CTQ26892.1 166 LQTWKADEASVSAAQAKVVQARNALDSVVKGKNTTVASLLAQLQKAQFQLE 216
                 567788899*************************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1173  (0.0654247); expected 358.6 (0.02)
Passed bias filter:                      721  (0.0402142); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 2703.52
//
Query:       CTQ26893.1  [L=265]
Description: Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-25   90.5   0.0    1.8e-25   90.0   0.0    1.2  1  ABC_tran     ABC transporter
    6.1e-13   49.2   0.1    1.5e-05   25.0   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    1.8e-09   37.4   0.1     0.0016   17.9   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
    1.8e-05   24.4   0.0    3.7e-05   23.4   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
    0.00016   22.3   0.0    0.00023   21.7   0.0    1.2  1  AAA_23       AAA domain
     0.0005   18.9   0.0       0.21   10.2   0.0    2.0  2  AAA_13       AAA domain
    0.00052   19.7   0.6     0.0011   18.5   0.1    2.0  2  AAA_25       AAA domain
     0.0019   17.1   0.1       0.23   10.2   0.0    2.6  2  ABC_ATPase   Predicted ATPase of the ABC class
     0.0026   17.9   0.0      0.014   15.6   0.0    2.1  1  AAA_33       AAA domain
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.038   13.9   0.0    1.5  1  RsgA_GTPase  RsgA GTPase
      0.028   14.7   0.2      0.057   13.7   0.1    1.7  1  AAA_22       AAA domain
      0.034   13.9   0.0      0.065   12.9   0.0    1.4  2  AAA_15       AAA ATPase domain
      0.049   14.0   0.3      0.078   13.3   0.3    1.7  1  AAA_16       AAA ATPase domain
      0.099   12.2   0.0       0.17   11.5   0.0    1.4  1  AAA_27       AAA domain
       0.22   11.4   0.8       0.46   10.4   0.2    1.8  2  NACHT        NACHT domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   1.5e-28   1.8e-25       8     136 ..      32     169 ..      25     170 .. 0.92

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 1.5e-28
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..............esdeeiekalskl 92 
                 l +g+++a++G+nG+GKStL++++agl  p  Ge+ll+g++l +q+ ++  +++ +lpq+     +l v e+              +++ee+ ++l++l
  CTQ26893.1  32 LPRGKITALLGPNGSGKSTLMRAMAGLG-PCRGELLLEGENLLTQPFSRRAEQVVYLPQTLPAGVHLHVLESiivaqraaggrhspQRQEEVMALLRQL 129
                 789************************6.68*****************************888888888888899999*****8887888888888888 PP

                 TTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  93 glkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 g+ +l+ + +     +LSgGqkq v la++l+++p+ lllDEp 
  CTQ26893.1 130 GIAHLAMSYL----DQLSGGQKQLVGLAQSLIRQPRQLLLDEPL 169
                 8888888888....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.2e-08   1.5e-05       1      24 [.      37      60 ..      37      92 .. 0.80
   2 !   22.3   0.1   8.3e-08   9.9e-05     234     288 ..     139     191 ..     137     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.2e-08
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                +++l GpNgsGKS+L++a+ +l  
  CTQ26893.1 37 ITALLGPNGSGKSTLMRAMAGLGP 60
                79*****************99965 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 8.3e-08
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.n 288
                 +++lS G+k+l +l+ +l+r++     ll+DEp + L+   + ++++l+++++r +
  CTQ26893.1 139 LDQLSGGQKQLVGLAQSLIRQPRQ---LLLDEPLSALDLNYQFHVMDLVRRETRrR 191
                 5799******************65...**********************8888842 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.4e-06    0.0016      24      44 ..      35      55 ..      21      64 .. 0.86
   2 !   17.6   0.1   1.7e-06    0.0021     118     198 ..     117     201 ..     109     219 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.4e-06
                SSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAi 44
                 ++ta++GpNGSGKs l+ A+
  CTQ26893.1 35 GKITALLGPNGSGKSTLMRAM 55
                579****************98 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.7e-06
                 E-HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SS CS
                 xxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
       SMC_N 118 vtkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislr 198
                  +++ev+ ll++ gi         +LSgG+k+Lv la  +     +p+   llDe  +aLD ++   v +l+++++ +     +v+ ++
  CTQ26893.1 117 QRQEEVMALLRQLGIAHLamsyldQLSGGQKQLVGLAQSLI---RQPRQ-LLLDEPLSALDLNYQFHVMDLVRRETRRrnIVTLVVVHD 201
                 5678999999999997655555559**********997642...33443.589*******************97654411444555554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   3.1e-08   3.7e-05      17      43 ..      29      56 ..      23      60 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.1e-08
      AAA_29 17 ieidlkg.atlltGpsGsGKSTllDAiq 43
                ++  ++g +t l Gp+GsGKSTl+ A++
  CTQ26893.1 29 VPHLPRGkITALLGPNGSGKSTLMRAMA 56
                455567889***************9986 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.9e-07   0.00023      19      39 ..      35      55 ..      16      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.9e-07
      AAA_23 19 kgltlItGpNGaGKTTildAi 39
                 ++t++ GpNG+GK+T+++A+
  CTQ26893.1 35 GKITALLGPNGSGKSTLMRAM 55
                579****************98 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0022       2.6      21      39 ..      40      58 ..      32      65 .. 0.85
   2 !   10.2   0.0   0.00017      0.21     526     561 ..     159     193 ..     148     203 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0022
      AAA_13 21 iYGwNGaGKTtLSrllrsl 39
                + G NG+GK+tL r+++ l
  CTQ26893.1 40 LLGPNGSGKSTLMRAMAGL 58
                679**********999876 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00017
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkka 561
                 + +   +D P S LD n +f+v+ l++ ++ ++ ++
  CTQ26893.1 159 QPRQLLLDEPLSALDLNYQFHVMDLVRRET-RRRNI 193
                 5566789**********************9.44554 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   9.6e-07    0.0011      22      75 ..      20      85 ..       7     144 .. 0.76
   2 ?   -1.7   0.1       1.5   1.8e+03     132     150 ..     240     259 ..     178     262 .. 0.54

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.6e-07
      AAA_25 22 rrwlvkg....llpagelallaGapgtGKttlaldla.lavatGkpwlg.......pvapeqgkVl 75
                rr+++++    +lp+g++++l G+ g+GK+tl   +a l  ++G+ +l+       p+  +   V+
  CTQ26893.1 20 RRKVIENltvpHLPRGKITALLGPNGSGKSTLMRAMAgLGPCRGELLLEgenlltqPFSRRAEQVV 85
                445555545559*******************99877623333555444444444455555555555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.5
      AAA_25 132 aleaaieeveg.vrlvviDp 150
                  ++ +ie + + vr v+iD 
  CTQ26893.1 240 GVRGRIEPCSQgVRQVIIDG 259
                 33333333322366666665 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00019      0.23     242     265 ..      32      56 ..      11      58 .. 0.82
   2 ?    3.9   0.0     0.016        19     331     411 ..     150     215 ..     135     221 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00019
                 E-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAle 265
                 +p+G +t++ G++  GKsTL++A++
  CTQ26893.1  32 LPRGkITALLGPNGSGKSTLMRAMA 56 
                 57889******************85 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.016
                 HHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEE CS
  ABC_ATPase 331 animealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilm 411
                 + ++++l ++ + lL+DE  sA  l ++ +                +d+vr+ +++ ++ t++vv  ++  l++Ad+v+++
  CTQ26893.1 150 VGLAQSLIRQPRQLLLDEPLSALDLNYQFHV---------------MDLVRRETRRRNIVTLVVVHDINIALRHADHVLML 215
                 5555555555556666666666555553333...............45555556666666666666666666666666666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.1e-05     0.014       4      89 ..      40     194 ..      37     211 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.1e-05
      AAA_33   4 lvGlpGsGKstlaerllkklg...avllssdt...................................lrrrlfgtdqqskt.................. 46 
                 l G++GsGKstl + ++  lg   ++ll + +                                   +            +                  
  CTQ26893.1  40 LLGPNGSGKSTLMRAMA-GLGpcrGELLLEGEnlltqpfsrraeqvvylpqtlpagvhlhvlesiivA------------Qraaggrhspqrqeevmal 125
                 68*************97.44447766544444466666677777777777777777777766666531............0222222222244567777 PP

      AAA_33  47 ............dytrvldrlyqilnelarkalsagrnvildat..............nlsr.rerarfl 89 
                             +  + l+   ++l +la++  ++ r+++ld +              +++r  +r++++
  CTQ26893.1 126 lrqlgiahlamsY-LDQLSGGQKQLVGLAQSLIRQPRQLLLDEPlsaldlnyqfhvmdLVRReTRRRNIV 194
                 7777777776633.33333444556689999999999999999877666655555555333313333444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.2e-05     0.038      98     121 ..      34      57 ..       6      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.2e-05
                  TTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallp 121
                  ++k+++l+G+ G GKStL+ a+++
   CTQ26893.1  34 RGKITALLGPNGSGKSTLMRAMAG 57 
                  569****************99875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   4.8e-05     0.057       5      27 ..      35      57 ..      33     167 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.8e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlle 27
                 +i+++ G+ G+GK+tl+r ++ 
  CTQ26893.1 35 GKITALLGPNGSGKSTLMRAMAG 57
                5799***************9875 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.4e-05     0.065      23      43 ..      36      55 ..      25      58 .. 0.90
   2 ?   -3.4   0.0         5     6e+03     293     317 ..     138     162 ..     136     176 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.4e-05
      AAA_15 23 eeltvliGkNnsGKSsileal 43
                + +t l G+N+sGKS++++a+
  CTQ26893.1 36 K-ITALLGPNGSGKSTLMRAM 55
                4.9***************997 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5
      AAA_15 293 plnknGsGvqrllllillileaekk 317
                 +l++ + G+++l+ l+  +++  ++
  CTQ26893.1 138 YLDQLSGGQKQLVGLAQSLIRQPRQ 162
                 5677777777777777766665555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   6.6e-05     0.078      22      45 ..      33      56 ..      20     201 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.6e-05
      AAA_16 22 grpelvllsGesGvGKsslvrell 45
                +r+ ++ l G+ G+GKs+l+r+ +
  CTQ26893.1 33 PRGKITALLGPNGSGKSTLMRAMA 56
                567899**************9876 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.17      27      48 ..      36      57 ..      25      59 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
      AAA_27 27 dlhliyGpNEAGKstalrAisd 48
                +++ ++GpN +GKst++rA+  
  CTQ26893.1 36 KITALLGPNGSGKSTLMRAMAG 57
                566789*************976 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00039      0.46       3      21 ..      38      56 ..      36      60 .. 0.88
   2 ?   -1.5   0.0       1.7     2e+03      69      84 ..     146     164 ..      96     197 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00039
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                 +l G++GsGK+tL++ +a
  CTQ26893.1 38 TALLGPNGSGKSTLMRAMA 56
                6799***********9875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.7
                 S-C...CHHHHCCSCCCEE CS
       NACHT  69 vse...vwavllelperlL 84 
                 +++     + l+++p++lL
  CTQ26893.1 146 QKQlvgLAQSLIRQPRQLL 164
                 2223323334566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1880.39
//
Query:       CTQ26894.1  [L=360]
Description: ABC transporter, iron chelate uptake transporter (FeCT) family, permease protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-88  296.4  37.1    2.5e-88  296.1  37.1    1.0  1  FecCD     FecCD transport family
    0.00011   21.9  22.6    0.00011   21.9  22.6    1.4  2  ABC-3     ABC 3 transport family
  ------ inclusion threshold ------
       0.12   11.5   8.5       0.24   10.5   8.5    1.6  1  FTR1      Iron permease FTR1 family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.1  37.1   4.1e-92   2.5e-88       1     312 []      40     355 ..      36     355 .. 0.97

  Alignments for each domain:
  == domain 1  score: 296.1 bits;  conditional E-value: 4.1e-92
       FecCD   1 llllllllslllgavkispsevfeallgka..dsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlallll... 94 
                 l++++lll ++lg++ ++++ +++ l++ a  d+  + iv+++rlp +++a++vG aL++aGa +Qt+++NpLa+P +lG+ss+aa+ga+la++l+   
  CTQ26894.1  40 LIVASLLLDFMLGPSGLPLQSLWQTLTDPAsaDPGTRAIVWDIRLPYAVMAIIVGLALGLAGAEMQTILNNPLASPFTLGVSSAAAFGAALAIVLGigl 138
                 4566788889*****************98888889999**********************************************************999 PP

       FecCD  95 lgslslfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvlllllllll 193
                  g ++++ +++ af++alla+ll+  ++ + ++  +  +iL+Gia+ + ++al+s+l++++ne++l+ ++fw++Gs+ +aswskv++llv+l+l+++l+
  CTQ26894.1 139 PGIPGQWFISANAFIFALLAALLLDGIT-RWTQVATSGVILFGIALVFTFNALVSMLQFIANEDTLQGLVFWTMGSIDRASWSKVAILLVALALVMPLS 236
                 9999************************.88899999************************************************************** PP

       FecCD 194 lllarkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptel 292
                 l  a kl++l+lg++ A s+G+nv+r+rl +ll +++l+a++va+vGpigF+GL++Phiar+l+g+dhr  lp+sal+Gal+l la +++++l+  + +
  CTQ26894.1 237 LRSAWKLTALRLGEDRAISFGINVRRLRLTTLLRISILSALSVAFVGPIGFIGLVAPHIARMLFGEDHRFYLPASALIGALVLSLASIASKNLIPGAII 335
                 *************************************************************************************************** PP

       FecCD 293 pvgivtaliGapffiylllr 312
                 pvgivt+l+G+pff+ ++lr
  CTQ26894.1 336 PVGIVTSLVGVPFFLSIILR 355
                 ***************99987 PP

>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   1.0       1.5   9.1e+03     170     184 ..      31      45 ..      27      47 .. 0.65
   2 !   21.9  22.6   1.8e-08   0.00011       6     235 ..      88     329 ..      83     355 .. 0.81

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1.5
       ABC-3 170 llllalialavvval 184
                 lll++l+al +v++l
  CTQ26894.1  31 LLLILLLALLIVASL 45 
                 566666666666654 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 1.8e-08
       ABC-3   6 qrallasilvslacallgsfvvlrrqsllgdalsHaalpGvalayllgvn.........lllgailvgliaavalellkrktklkedtai..givlsvf 93 
                 + a++++++++la a + + +    +s +  ++s aa  G ala++lg+          +++ a++++l+aa+ l  ++r t++++  +i  gi l ++
  CTQ26894.1  88 VMAIIVGLALGLAGAEMQTILNNPLASPFTLGVSSAAAFGAALAIVLGIGlpgipgqwfISANAFIFALLAALLLDGITRWTQVATSGVIlfGIALVFT 186
                 66888999999999999988888899**********************9999999**999999********************9999876336655555 PP

       ABC-3  94 lalglvlvslikk..skvdldsyLfGniltisqedliliaiieavvllllllfwkelllitfdeelAkveglsvkllkllllalialavvvalqavGvi 190
                 +   + +++ i +  + ++l  + +G+i   s   + +++++ a+v+ l l    +l+++ + e+ A + g++v++l+l+ l+ i++  ++++ +vG i
  CTQ26894.1 187 FNALVSMLQFIANedTLQGLVFWTMGSIDRASWSKVAILLVALALVMPLSLRSAWKLTALRLGEDRAISFGINVRRLRLTTLLRISILSALSVAFVGPI 285
                 54434444444433477777777778888888888888888888888888888889***********************9999999999********** PP

       ABC-3 191 LvialliiPaatArrltrslesllivAillglvsvvaGlllSyyl 235
                   i  l++P ++ ++++++ +  l  ++l+g++ + + ++ S  l
  CTQ26894.1 286 GFIG-LVAPHIARMLFGEDHRFYLPASALIGALVLSLASIASKNL 329
                 9998.589**99999999999999999999998888777777654 PP

>> FTR1  Iron permease FTR1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   8.5     4e-05      0.24     164     222 ..     112     170 ..      88     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4e-05
        FTR1 164 rvsalilgvvlGaliavvlglliyrglvklslqsffilegflLllvaagLfsvgtlell 222
                  +s++ lgv+ +a+++ +l++++++gl  + +q+f+ ++ f+ +l+aa L+ + t + +
  CTQ26894.1 112 LASPFTLGVSSAAAFGAALAIVLGIGLPGIPGQWFISANAFIFALLAALLLDGITRWTQ 170
                 478999********************************************998888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2715.14
//
Query:       CTQ26895.1  [L=372]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-22   80.9   0.0    1.4e-22   80.4   0.0    1.1  1  Peripla_BP_2  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   7.8e-27   1.4e-22      44     235 ..     103     315 ..      70     317 .. 0.89

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 7.8e-27
                   SBESSSB-HHHHHHH--SEEEE-GGG.......GGGHHHHHHHS-EEE----TTS.HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT CS
  Peripla_BP_2  44 vgadgeidvEklaalkPDlvilskgl....gltdedeellksgiptvivessntg.eslkeqiralgellgledeaeklvaeidsklaaaksaidse 135
                   ++  g++d+E+++a +PDl i++ +          +++l ++++p+++v++      +   +i  lg++l++e++a+++   + + l+ ++++++ +
    CTQ26895.1 103 FSDKGNVDLESVIARQPDLMIAQLRArpalMESGVIDKLSALHVPVLFVDYEIDPaKDTAPSIDLLGKVLNRESQAKAFTDYYRQQLQTIRQKTAAI 199
                   566788999******************99989999************999984224888889*********************************** PP

                   .-EEEEEEEETTE.....EEEE-TTSTTTHHHHTS--EESTTT--STT-EEE-HHHHHHH--SEEEEEEH..............HHHT-S--HHHHT CS
  Peripla_BP_2 136 kpkpvlvfggade...ggyvvagsnsyigdlldalgieniaaeskkseyeeisaEqilasdpdvifvsgr..............aeadnktgleflk 215
                     ++++vf +a +    +  +++  s++g l++a+g++ni ++   ++++ +s E i +++pd+++++g+              + +  k+ ++ l+
    CTQ26895.1 200 -TPKANVFVEALAgnsDACCFTHGHSGWGGLVEAVGANNIGSQLLPGASGFVSLEKIISMKPDAWIMTGSkrgnsqvlplgyevKPEAVKAQAQTLL 295
                   .66677777766657799**********************77777**************************************988889999***** PP

                   -SHHHHTSHHHHTT-EEEE- CS
  Peripla_BP_2 216 enpllaelpAvkngrVyald 235
                   ++p+++++pAv+++r y+++
    CTQ26895.1 296 ARPGVSQIPAVQEKRAYGVY 315
                   *****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2926.73
//
Query:       CTQ26896.1  [L=129]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        0.5   10.1   2.4       0.69    9.6   2.4    1.4  1  Connexin    Connexin
        1.2    9.7  12.4          3    8.5   2.9    2.3  2  YtxH        YtxH-like protein
        2.5    8.2  10.3        2.5    8.2   9.8    1.4  1  ATP-synt_B  ATP synthase B/B' CF(0)
        2.5    6.3   6.1        2.8    6.2   6.1    1.0  1  Smg8_Smg9   Smg8_Smg9
        3.1    6.5   5.7        3.6    6.3   5.7    1.0  1  Presenilin  Presenilin
          6    7.2  11.6        7.8    6.8  11.6    1.2  1  Vfa1        AAA-ATPase Vps4-associated protein 1


Domain annotation for each model (and alignments):
>> Connexin  Connexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.4   0.00023      0.69      77     142 ..       7      73 ..       3     126 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00023
    Connexin  77 vlqiilvstPsllylvyvlhkiakeek.ekek.eeeekeeeekeeekkkkkekkkkkkkeeekekkke 142
                 +l  ilv+ P +   ++++  +  +++ ++++ +e+ ++++++ ee++ k++++  + k+++  ++ +
  CTQ26896.1   7 ALSAILVAAPVFAATTHATDDTVAAANaNANTaKEKLHQAQHEGEEQQLKAKHA-AEGKQDSVGSQVS 73 
                 67889************9997666666233332222223333333333222222.2222222222222 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   4.9     0.011        32      29      73 ..      31      78 ..      23      85 .. 0.69
   2 ?    8.5   2.9   0.00099         3      26      74 ..      79     127 ..      71     129 .] 0.60

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.011
        YtxH 29 dlkekaddlkekakelleeakeka...kekaedlkekvkekadelkek 73
                 ++ +a+++kek+ ++ +e +e+    k+ ae  +++v ++++e ++k
  CTQ26896.1 31 AANANANTAKEKLHQAQHEGEEQQlkaKHAAEGKQDSVGSQVSEGAQK 78
                456677888888877777777777888666777777777776665544 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00099
        YtxH  26 tRkdlkekaddlkekakelleeakekakekaedlkekvkekadelkekv 74 
                 t ++ ke +++ ++k+ke+ e+  + +k+ ae+  +k k +a+elk+kv
  CTQ26896.1  79 TWNKTKEGTEKGWDKTKEVSEKGWNATKSGAEKGWDKTKTGAEELKNKV 127
                 4455555666666666555444444447777777777777777777765 PP

>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   9.8   0.00085       2.5      32      93 ..      26      87 ..       4     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00085
  ATP-synt_B 32 eekIadeiaeAeerrkeaaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaea 93
                ++ +a++ a+A+++++++ +++ e e+q+ +A+  A+   +++ ++ ++ +++  +++++  
  CTQ26896.1 26 DDTVAAANANANTAKEKLHQAQHEGEEQQLKAKHAAEGKQDSVGSQVSEGAQKTWNKTKEGT 87
                57899*******************************99999999888888888888777655 PP

>> Smg8_Smg9  Smg8_Smg9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.1   0.00093       2.8     533     615 ..      16     101 ..      12     129 .] 0.43

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00093
                 XXXX...XXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXX.XXXXXXX..XXXXXXXXXX...XX.......XXXXXXXXXXXXXXXX CS
   Smg8_Smg9 533 pvFq...pstsdyraaeeeaafpleeaeeskeaekkkekeeselsegessdlsla..eslgeseesseevee.......dseessesdseseede 615
                 pvF      t+d  aa++ +a++ +e+ ++ ++e ++++ +++++++ +++ s++   s+g +++ + +++e       +       ++e +e++
  CTQ26896.1  16 PVFAattHATDDTVAAANANANTAKEKLHQAQHEGEEQQLKAKHAAE-GKQDSVGsqVSEGAQKTWN-KTKEgtekgwdK-------TKEVSEKG 101
                 78875446678998988888866655555555554444444433332.3334444224444444222.333322222221.......11111111 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.7    0.0012       3.6     218     291 ..      20      96 ..       5     127 .. 0.27

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0012
  Presenilin 218 atvvvlaaeekkaevaeseeeeeaekkkeeasesskeeeseeesseksaqsse..........seeeseeesseaessaeesse 291
                 at+ ++ +     +va+++ ++++ k+k ++++++ ee++ + ++ +++++++          ++ +++  ++ +e+  ++++e
  CTQ26896.1  20 ATTHATDD-----TVAAANANANTAKEKLHQAQHEGEEQQLKAKHAAEGKQDSvgsqvsegaqKTWNKT--KEGTEKGWDKTKE 96 
                 22222222.....11111111111111111111111111111111111111111111111111111111..1111111111111 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  11.6    0.0026       7.8      42     129 ..      22     117 ..      13     129 .] 0.35

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0026
        Vfa1  42 sHLkDkqFatpivdeeeeeaakkkkeleeeiekvkkeyeekqkkkkekekkk...........kekd.kkdkdkkkekekdkkkekek.........ee 119
                  H +D   a    ++++         ++e++++ ++e ee+q k k++ + k            +k+ +k k+ + ek  dk+k   +         ++
  CTQ26896.1  22 THATDDTVAAANANANT---------AKEKLHQAQHEGEEQQLKAKHAAEGKqdsvgsqvsegAQKTwNKTKEGT-EKGWDKTK---EvsekgwnatKS 107
                 44444444444444433.........4455555555555555444443333322333222222222221111111.11111111...111123332233 PP

        Vfa1 120 ekkkelkkae 129
                  ++k  +k++
  CTQ26896.1 108 GAEKGWDKTK 117
                 3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2171  (0.121089); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 986.60
//
Query:       CTQ26897.1  [L=70]
Description: hypothetical protein CH1034_140042 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 527.44
//
Query:       CTQ26898.1  [L=151]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-21   75.6   0.9      4e-21   74.8   0.9    1.4  1  RcnB      Nickel/cobalt transporter regulator


Domain annotation for each model (and alignments):
>> RcnB  Nickel/cobalt transporter regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.9   2.2e-25     4e-21       1      51 []      92     142 ..      92     142 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 2.2e-25
        RcnB   1 GdrlppeyrgrryvvdDwrryhLpaPprGyrWvriggdyvLvaiatGvIas 51 
                 G+++p+ +rg+ y+v+Dw+ ++Lp+Pp+G++W +i+g+yvL+a atG+I+s
  CTQ26898.1  92 GHPAPAPFRGDEYRVRDWSDRGLPPPPEGHHWSYIDGNYVLIAAATGIITS 142
                 899**********************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 1144.61
//
Query:       CTQ26899.1  [L=41]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 340.43
//
Query:       CTQ26900.1  [L=392]
Description: Hippurate hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-34  117.5   0.2    8.5e-34  117.1   0.2    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    9.7e-10   38.3   0.1    1.7e-09   37.5   0.1    1.4  1  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1   0.2   9.5e-38   8.5e-34       2     206 ..      75     388 ..      74     389 .. 0.90

  Alignments for each domain:
  == domain 1  score: 117.1 bits;  conditional E-value: 9.5e-38
                    EEEES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Peptidase_M20   2 lgsHlDvVpeeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdavfe 96 
                    l++++D++p eet+g   p+++t + Gk++++G+d++++++laa++++++ + ++   +gt++l+fqp+EE+  gGa  +++ gl+e+++++ +f+
     CTQ26900.1  75 LRADMDALPIEETTGL--PWASTAP-GKMHACGHDGHTTILLAAAKYIASPACQF---NGTVHLIFQPAEEAI-GGADLMIKdGLFEQFPCERIFG 163
                    89*******5555466..*****88.**********************9977777...*************54.999*****888899******** PP

                    EEEESSSBTCHSTETEEEE............................................................................. CS
                    xxxxxxxxxxxxxxxxxxx............................................................................. RF
  Peptidase_M20  97 lhieepgileagklaigvv............................................................................. 115
                    lh + pg+++ gkl++  +                                                                             
     CTQ26900.1 164 LHNM-PGLPV-GKLGFYAGnfmasadtvkititgygghgahpertvdpivagaalvmalqsivarnvppgetavvsvgtfqagiasnvipesavme 257
                    **99.*****.9988888899*************************************************************************** PP

                    ..............................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSC.EEEEEES.SSBHTHHHH.TTTE.EEEEEES CS
                    ..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxx.xxxx.xxxxxxx RF
  Peptidase_M20 116 ..............................kvevelleggapvtlndsplvkalaeaaeelfgek.velivsg.pggtdarff.agip.tvmifgp 177
                                                  + +v ++ +++pv +n+++ ++++++ a e+fg++ v +++s+  +++d++f+  + p +++++g 
     CTQ26900.1 258 lsvramkpeirdllikriheladftaksygASSVVEVYDSYPVLTNSPEETDFARALALEVFGREgVLESISPmNASEDFAFMlRERPgSYFLLGN 353
                    ****************************9945555578************************9997777799999********6556878889997 PP

                    S.G.....GCTTSTTTEEE..HHHHHHHHHHHHHHHH CS
                    x.x.....xxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
  Peptidase_M20 178 g.s.....glaHspnEyvd..ledlekgikvlarlle 206
                    g +      ++  +n+ +d  ++ + +g+ ++arl+e
     CTQ26900.1 354 GeKgekggCMV--HNPGYDfnDDIITTGATLFARLVE 388
                    75367744444..55555555*************997 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.1   1.9e-13   1.7e-09       8     107 ..     188     285 ..     184     287 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.9e-13
                 EEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCC..CCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSC CS
   M20_dimer   8 ggkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprtt..lnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeileke 104
                 ++kit++g +gH++ p++ +++i + a l+ +l++   +    + +p++t  ++v+++++G a+nvip++a +++++R  + e ++ ++++i e+++  
  CTQ26900.1 188 TVKITITGYGGHGAHPERTVDPIVAGAALVMALQSIVAR----NVPPGETavVSVGTFQAGIASNVIPESAVMELSVRAMKPEIRDLLIKRIHELADFT 282
                 79**********************888888888888666....4455555235788899999*******************************999877 PP

                 CST CS
   M20_dimer 105 ape 107
                 a++
  CTQ26900.1 283 AKS 285
                 665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2840.21
//
Query:       CTQ26901.1  [L=258]
Description: histidine/lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-61  205.9   0.0    6.2e-61  205.7   0.0    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
     0.0017   18.3   0.0     0.0082   16.1   0.0    1.9  2  NMT1             NMT1/THI5 like
  ------ inclusion threshold ------
       0.01   16.0   0.0      0.057   13.6   0.0    2.1  2  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.7   0.0     1e-64   6.2e-61       1     224 [.      25     251 ..      25     252 .. 0.97

  Alignments for each domain:
  == domain 1  score: 205.7 bits;  conditional E-value: 1e-64
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 +r+gvd++++Pf+ kd++g+l+Gfd+dl +ai+++l+ k+ +v+ ++d++ipalk+ k+D++ +++++t++R+++++Fs+  ++ ++ l++rk++    
  CTQ26901.1  25 IRFGVDPTFAPFEWKDPQGKLAGFDIDLGNAICQQLQAKCVWVESNFDGIIPALKARKFDAILSGMYMTEKRKAQIAFSDKLYNGPVFLVARKNT---- 119
                 799****************************************99**********************************************9764.... PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC.TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE......ECGGCECEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkk.gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv......eeplsseeyaiav 191
                  + +++++Lkgk++gv +gs++e++++++++  g++iv ++  ++++++L++gr+d +v + +++ y   ++p +k+++       + +l+++++ai++
  CTQ26901.1 120 LQGNTPEQLKGKTIGVEQGSAQETYVNQHWRPqGINIVAYQGADSVVRDLESGRIDGAVLSGMMADYSFLQQPQGKEFAFvgghlqDDTLFGAGAAIGL 218
                 3566799*********************99889*******************************************99999****************** PP

                 ETTTHHHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 192 rkgdseLrkainkalaelkadgtlakisekWfg 224
                 rk+d++Lr++in a+a++ adgt++k++ k+f+
  CTQ26901.1 219 RKDDEALRQEINGAIAKILADGTYKKLAGKYFS 251
                 *******************************96 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.075   4.5e+02     123     155 ..      65      97 ..      58     106 .. 0.81
   2 !   16.1   0.0   1.4e-06    0.0082      74     145 ..     110     178 ..      88     200 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.075
                 EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHH CS
        NMT1 123 tlvnvggtslakalltgkvDaaiggyenwegve 155
                   v+ +++  ++al + k+Da++ g++  e+ +
  CTQ26901.1  65 VWVESNFDGIIPALKARKFDAILSGMYMTEKRK 97 
                 557777888999***********9999888765 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.4e-06
                 -EEEEEECCC-.-SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEE CS
        NMT1  74 lsglivlkdsg.ikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaai 145
                 +  l+++k++   ++p+ LkGk+ig+ +++ +++ +++ ++ +g++  +++      +s++ +l +g++D a+
  CTQ26901.1 110 PVFLVARKNTLqGNTPEQLKGKTIGVEQGSAQETYVNQHWRPQGINIVAYQG----ADSVVRDLESGRIDGAV 178
                 4445666666669********************************6655555....55566799999999775 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.24   1.4e+03      26      44 ..      43      61 ..      34      69 .. 0.80
   2 ?   13.6   0.0   9.6e-06     0.057      65     113 ..      69     117 ..      58     119 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.24
                     GGEESHHHHHHHHHHHHHT CS
  Lig_chan-Glu_bd 26 eryeGfcidLlkelakklg 44
                      ++ Gf idL +++ ++l+
       CTQ26901.1 43 GKLAGFDIDLGNAICQQLQ 61
                     5689******999998876 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 9.6e-06
                      TEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEEES CS
  Lig_chan-Glu_bd  65 kewnGmigellekkadlavapltitaeReevvdFtkpfmelgisilikk 113
                      ++ +G+i  l ++k d +++ + +t++R+  + F++  ++  + ++ +k
       CTQ26901.1  69 SNFDGIIPALKARKFDAILSGMYMTEKRKAQIAFSDKLYNGPVFLVARK 117
                      479*********************************9999888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1919.65
//
Query:       CTQ26902.1  [L=78]
Description: hypothetical protein CH1034_140047 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 580.40
//
Query:       CTQ26903.1  [L=317]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-71  239.6   0.0    4.6e-71  239.4   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.4   0.0   2.5e-75   4.6e-71       1     292 [.      15     315 ..      15     317 .] 0.94

  Alignments for each domain:
  == domain 1  score: 239.4 bits;  conditional E-value: 2.5e-75
                   .EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-.......TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.--SSSTTSSSS-HHHHHHH CS
  Aldo_ket_red   1 elglGtwqlgskeeiskeealellrraleaGinffDtAevY.......gkgqseellGealkksrkkreeviiatKv.dlrdaeiksglskenires 89 
                   +l++G++ +g+  +i+++++++ll++++++G+ ++DtA+vY       + g+se+++G++l++++++r++v i tKv  +   + + glsk++i+++
    CTQ26903.1  15 PLVFGGNVFGW--TIDEKTSFALLDAFVDHGFDAIDTADVYsrwaegnQGGESETIIGRWLQARPGMRDKVKIFTKVgSDLGLPGHKGLSKAWIQQA 109
                   699*******9..9*********************************999***************************655566899*********** PP

                   HHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHH CS
  Aldo_ket_red  90 leeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynll.releeegllelckk 181
                   +++sl+rL+tdy+Dl++ H+pdp++p ++e+l+a++ l+++Gkira+G Sn ++ ql  a    +k +   + ++q eynl+ r+ +e  l +lc  
    CTQ26903.1 110 VDDSLRRLNTDYIDLYFSHWPDPQTP-VAETLEAFHSLQQAGKIRAMGASNLDAMQLAGAlevaRKGGLPAWQVLQPEYNLYhRSAFEGALCDLCVS 205
                   **************************.**************************99999999995555666699************************ PP

                   TT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG CS
  Aldo_ket_red 182 kgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldale 278
                    ++++++y  l++G+ltgky++++d  + ++ +  + +  +++ +  +++l ++a e+g ++a++al++++ +++v+ +i +a++++q+e  ++a +
    CTQ26903.1 206 RDIGVVTYYSLASGFLTGKYRQPSDLTQSQRGSGIG-KYLNPRGMRIIDTLAAVADEQGAKPAEVALAWLIGREGVTAPIASATSVAQVESFARAAA 301
                   *************************97555544443.39********************************************************** PP

                   ----HHHHHHHHHH CS
  Aldo_ket_red 279 lklseeevaeldel 292
                   l ls+e+va+ld +
    CTQ26903.1 302 LSLSAEQVARLDGA 315
                   ***********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2352.72
//
Query:       CTQ26904.1  [L=263]
Description: Protein MoaF [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-46  156.2   0.0    3.1e-46  155.7   0.0    1.2  1  MoaF_C    MoaF C-terminal domain
    7.9e-17   61.2   0.0    4.3e-16   58.8   0.0    1.9  2  MoaF      MoaF N-terminal domain


Domain annotation for each model (and alignments):
>> MoaF_C  MoaF C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.7   0.0   3.4e-50   3.1e-46       3     111 ..     148     257 ..     146     259 .. 0.98

  Alignments for each domain:
  == domain 1  score: 155.7 bits;  conditional E-value: 3.4e-50
                 E--TTTTEEEEEEECTTEEEEEEE-SSSEEEEEEEESTTTT-EEEEEEEEEEEETTEEEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSSS.-SEEE CS
      MoaF_C   3 ptreLiGkrvlyrYsakeaYeHiYlneetytWqclaGeekgladtdeckvlkladelylfvwrEkviPvesvvvidleklrstGklfgldekd.eevvn 100
                  t+ L+G+r++y+Ys++e YeHiYln+++y+Wqcl G+ekglad+d+c+++++a++l lfvwrEk+iP+++v++idl+++r++Gk++g++++d ++++n
  CTQ26904.1 148 FTTALVGMRNQYTYSPTERYEHIYLNDNFYAWQCLDGVEKGLADVDRCHYVQVAEDLNLFVWREKIIPTLGVILIDLQQMRTDGKIMGYQGSDfGALSN 246
                 699************************************************************************************************ PP

                 EEEEEEEEEEE CS
      MoaF_C 101 vtvgahaevls 111
                 ++vga a++l+
  CTQ26904.1 247 FPVGASAKILN 257
                 *********98 PP

>> MoaF  MoaF N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   4.8e-20   4.3e-16       2     108 .]       6     108 ..       5     108 .. 0.95
   2 ?    0.1   0.0     0.083   7.5e+02      22      73 ..     150     204 ..     145     228 .. 0.72

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 4.8e-20
                 ----HHHHHHHH..T--------TTTT-EEEEEETTEEEEE...EETTEEEEEETTTTEEEEEE-EEEECCTTEEEEEEEETTSTTEEEEEEEETTTTE CS
        MoaF   2 ewitvgaLAeGf..denllpevddLaGrtltlalengatieheffdadtlrWteeekeesgeaeyeatevregiYfvdflkkereaesvslvldlrtgr 98 
                  +i+vgaLA+Gf    nll++++  aG ++t++ +     +  + d++tl+W+        +a+ +at +r++i f+dfl++er++ s+s v +l+++ 
  CTQ26904.1   6 VFIQVGALADGFapHGNLLATASLPAGENFTFYVAGSEPQQLVIEDEQTLSWNG------KRAPWRATALRPDILFIDFLDPERDNASISAVCNLTQRN 98 
                 69***********99*******************99977777789********9......89************************************* PP

                 EEEEEEE--- CS
        MoaF  99 alaveselpd 108
                 a+ v ++lpd
  CTQ26904.1  99 ATLVYGQLPD 108
                 *******996 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.083
                 -TTTT-EEEEEETTEEEEE...EETTEEEEEE...TTTTEEEEEE-EEEECCTTE CS
        MoaF  22 ddLaGrtltlalengatieheffdadtlrWte...eekeesgeaeyeatevregi 73 
                 ++L+G + + +++   ++eh  ++++  +W+     ek+    ++++ ++v+e++
  CTQ26904.1 150 TALVGMRNQYTYSPTERYEHIYLNDNFYAWQCldgVEKGLADVDRCHYVQVAEDL 204
                 6777777777777777777778888888888855444445555667777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1959.96
//
Query:       CTQ26905.1  [L=258]
Description: Protein MoaE [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-53  179.3   0.3    1.3e-52  178.8   0.3    1.2  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    3.7e-43  147.3   0.0    4.7e-43  146.9   0.0    1.1  1  adh_short        short chain dehydrogenase
    2.3e-06   27.7   0.6    4.8e-06   26.6   0.6    1.5  1  KR               KR domain
  ------ inclusion threshold ------
      0.069   12.3   0.0       0.15   11.1   0.0    1.6  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
       0.11   12.7   0.1       0.24   11.7   0.1    1.5  1  TrkA_N           TrkA-N domain
       0.18   12.4   0.7       0.42   11.2   0.7    1.6  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.8   0.3   4.2e-56   1.3e-52       4     233 ..      12     247 ..       8     248 .. 0.93

  Alignments for each domain:
  == domain 1  score: 178.8 bits;  conditional E-value: 4.2e-56
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHH.HHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqv.ealveevvekfgklDilvnnagiapklkgpfletsreefdral 99 
                    gIG+a+A+++ ++G +v +t ++e+    ++++a+e+ga++l  +++d e + ++l  ++ +++g++D l+ +ag + +  +p++ets+ ++++al
    CTQ26905.1  12 TGIGAACARLMRAAGDRVFITGRREAP---LQAVANETGATALVGNAADGEVWrQRLLPAILDQTGGIDALICSAGGMGN--SPAAETSDRQWREAL 103
                   69************************9...9******************999735799**********************..*************** PP

                   HHHTHHHHHHHHHHHH.HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT.........HH CS
  adh_short_C2 100 dvnlyslfllakaalp.lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg.........fd 186
                   d nl+s+f+ ++a+lp l++++g+++ ++s+++  + p+   y +aK+al++l+r++A+++gpkg+R Nav+pg++ T++a++  +           
    CTQ26905.1 104 DGNLTSAFASVRACLPsLIARRGNVLFVASIASLAAGPQACGYVTAKHALIGLMRSVARDYGPKGVRANAVCPGWVTTPMADEEMRplmqaeglsLA 200
                   ****************999*************************************************************77643333333334455 PP

                   HHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 187 elleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   e ++++ +  pl+r ++pee+aea+ fL+s++a+ i+G+tlv+DgG 
    CTQ26905.1 201 EAYQRVCRDVPLRRSASPEEIAEACQFLCSPQAAIISGATLVADGGA 247
                   68899999**************************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.0   1.6e-46   4.7e-43       2     190 ..       4     187 ..       3     191 .. 0.95

  Alignments for each domain:
  == domain 1  score: 146.9 bits;  conditional E-value: 1.6e-46
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHH.HHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreev.ealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 vv++tG++ GIG a+a+ + ++G +v++++r+e++l++va+e +     a+a+ ++ +d e + ++l+ ++ +++g++d+L+  AG  g++p++e+s++
  CTQ26905.1   4 VVVITGGGTGIGAACARLMRAAGDRVFITGRREAPLQAVANETG-----ATALVGNAADGEVWrQRLLPAILDQTGGIDALICSAGGMGNSPAAETSDR 97 
                 9*****************************************99.....5688888887666526799******************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 +w++ ++ Nlt++f  +ra+lp ++ +++G++ +v+S+a++ + ++ + Y ++K+a++gl+rs+a+++ p+g+r nav+PG v T+ma e+
  CTQ26905.1  98 QWREALDGNLTSAFASVRACLPSLI-ARRGNVLFVASIASLAAGPQACGYVTAKHALIGLMRSVARDYGPKGVRANAVCPGWVTTPMADEE 187
                 ***********************99.99***********************************************************9876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.6   1.6e-09   4.8e-06       3     162 ..       5     159 ..       3     172 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.6e-09
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHH.HHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdav.ealleeikaeeppikGvihaAgvlrdklleem 100
                 ++itGG  g+G + ar + + g r + +++R++a+ ++ +      +++ga  +++    +d +   ++ll +i ++++ i   i +Ag + +++ +e+
  CTQ26905.1   5 VVITGGGTGIGAACARLMRAAGDR-VFITGRREAPLQAVA------NETGA--TALVGNAADGEVWrQRLLPAILDQTGGIDALICSAGGMGNSPAAET 94 
                 79**************99888875.778999933332222......33344..34444455555441577888888889******************** PP

                 -HHHHHHHHTTTTHHHHH.HHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawn.Lhelled..esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                 ++ +++++l   ++ a   +  +l++   +   +++++Sia+l   ++ + Y +a + l +l+++
  CTQ26905.1  95 SDRQWREALDGNLTSAFAsVRACLPSliARRGNVLFVASIASLAAGPQACGYVTAKHALIGLMRS 159
                 ************998765155555558878889999*******************9998888776 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.2e-05      0.15       1     115 [.       5     117 ..       5     128 .. 0.70
   2 ?   -2.1   0.0      0.53   1.6e+03     206     234 ..     221     249 ..     220     256 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.2e-05
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT...T-SE.EEE------HHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel.kvdv.vfhaAAlKhVPl 92 
                      v++tG+g  iG + + ++++    ++++  r E  l+++++e+ ++     l     +  g+v  ++ l  +l+++ ++d+ +  a  + + P+
       CTQ26905.1   5 VVITGGGTGIGAA-CARLMRAAGDRVFITGRREAPLQAVANETGAT----AL--VGNAADGEVWRQRLLPAILDQTgGIDAlICSAGGMGNSPA 91 
                      79*********76.8999**********************997322....22..1234457777777777777765245541444556777777 PP

                      HHH...SHHHHHHHHHHHHHHHHHHH CS
  Polysacc_synt_2  93 vee...npleaiktNvlgtenvieaa 115
                      +e+   ++ ea++ N +++   ++a+
       CTQ26905.1  92 AETsdrQWREALDGNLTSAFASVRAC 117
                      76432256677777777777766666 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.53
                      HHHHHHHHHHHHHH--SS-EEEE--.-EE CS
  Polysacc_synt_2 206 ieeavqLvlqalalakggeifvldmGepv 234
                      i+ea+q++ +  a   +g  +v d G ++
       CTQ26905.1 221 IAEACQFLCSPQAAIISGATLVADGGASI 249
                      899*******9999999999999998764 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   8.1e-05      0.24       2      57 ..       6      63 ..       4      66 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.1e-05
                EEES-SH.HHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTT.SEEEES-TTSHHHHHH CS
      TrkA_N  2 iiiGlGr.vGrslaeeLseggkdvvvidkdeerveelreeg.levvvgdatdeevLee 57
                +i G G+ +G + a+ ++++g++v +  ++e+ ++ +++e  ++++vg+a+d ev+++
  CTQ26905.1  6 VITGGGTgIGAACARLMRAAGDRVFITGRREAPLQAVANETgATALVGNAADGEVWRQ 63
                555555438999999999977679999999999****9777699***********986 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   0.00014      0.42       2      46 ..       5      51 ..       3      60 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
                EEEECSSH.HHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHH CS
   Pyr_redox  2 vvvvGgGy.iglElAgalaelgkkVtvversdkll.rllDeeaskil 46
                vv+ GgG+ ig  +A  +++ g++V +  r++ +l  + +e+ +++l
  CTQ26905.1  5 VVITGGGTgIGAACARLMRAAGDRVFITGRREAPLqAVANETGATAL 51
                566677755899999999*****************888888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1986.96
//
Query:       CTQ26906.1  [L=577]
Description: Arylsulfatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-66  222.3   1.7    1.2e-65  222.0   1.7    1.1  1  Sulfatase     Sulfatase
    1.5e-09   38.0   0.4    3.4e-08   33.5   0.4    2.2  1  Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosp
    0.00086   19.2   0.0     0.0028   17.6   0.0    1.9  2  DUF4994       Domain of unknown function
     0.0049   17.1   0.0       0.01   16.0   0.0    1.4  1  DUF1359       Protein of unknown function (DUF1359)
  ------ inclusion threshold ------
      0.021   15.6   0.1       0.11   13.3   0.0    2.0  2  Sulfatase_C   C-terminal region of aryl-sulfatase
       0.15   10.6   0.0        9.2    4.7   0.0    2.2  2  DUF229        Protein of unknown function (DUF229)


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.0   1.7   3.9e-69   1.2e-65       1     309 []      26     428 ..      26     428 .. 0.95

  Alignments for each domain:
  == domain 1  score: 222.0 bits;  conditional E-value: 3.9e-69
                 EEEEEEEESSE-TTGSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTT........HHCTTTS-HHHHHHHH CS
   Sulfatase   1 pnvvliladdlgagdlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgg........gglpqteatLpellke 91 
                 pnv++i+add+g++d++ +gg+++ tpnl+++ae+g+r +++y++ p+++p+r++lltg +++++g++ +  +            l  +++t++e +k+
  CTQ26906.1  26 PNVIVIIADDMGYSDISPFGGEIP-TPNLQAMAEQGMRMSQYYTS-PMSAPARSMLLTGNSNQQAGMGGMWWYDStigkegyeLRLTDRVTTMAERFKD 122
                 9***********************.9*****************66.9*********************99988889999*9999999************ PP

                 TT-EEEEEEES-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCC..........TTTTCSHHHHHHHHHHHHHHCCC.TSSEEEEEEE CS
   Sulfatase  92 aGYntaaigkwhlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrv..........ppeggysddrlldealefllarn.dkpfflylat 179
                 aGYnt ++gkwhlg+ +  + +k rgf++ ++f +g + + +     ++ e++ +           p+ +ys+++++ ++  +++a++ ++p f++la+
  CTQ26906.1 123 AGYNTLMAGKWHLGFVPGAT-PKDRGFNHAFAFMGGGTSHFNDAIPLGTVEAFHTyytrdgervsLPDDFYSSEAYARQMNSWIKATPkEQPVFAWLAF 220
                 ****************8777.689******************9999999988888*****************************88888********** PP

                 -TTSSSTCTCGGHTCCGSTTTTCCCCC.CH.......................................HHHHHHHHHHHHHHHHHHHHHHHHHHTTTG CS
   Sulfatase 180 lapHappeapdeyakkyatffddgsea.ar.......................................qlleaylnsveyvDdligrvlaaLeengll 238
                  apH p++apde+ k++++ +++g+ + +r                                       +++++y+++++++D +ig ++++L+++g +
  CTQ26906.1 221 TAPHDPLQAPDEWIKRFKGQYEQGYAEvYRqriarlkalgiihddtpmphleldkewealtpeqqkytaKVMQVYAAMIANMDAQIGTLMETLKQTGRD 319
                 *********************99988852266777888899999999999999999999**************************************** PP

                 GGEEEEEEESSSSCCCG.....................................HHTTSSSCTTCSSSHHHHBEEEEEEETTTSHC.EEECSEEEGGGH CS
   Sulfatase 239 dntlvvftSDhgaslee.....................................sngplrggkganayeggtrvPllvwwpgekap.rvseelvshiDl 299
                 +ntl+vf+ D+ga   +                                     sn+p+  + + ++ +gg+++++++ +pg+ ++ ++++  + + D+
  CTQ26906.1 320 KNTLLVFLTDNGANPAQgfyyestpefwkqfdnsydnvgrkgsfvsygphwanvSNAPYANYHKTTSAQGGINTDFMISGPGITRHgKIDASTMAVYDV 418
                 *************9988*************************************99999999999*********************999999999**** PP

                 HHHHHHHTTE CS
   Sulfatase 300 fptildlagi 309
                 +pt+++ agi
  CTQ26906.1 419 APTLYEFAGI 428
                 *******997 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.4   1.1e-11   3.4e-08       1     240 [.      28     342 ..      28     388 .. 0.64

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.1e-11
                   EEEEEETT-BTTHHHHHG.S.TSHHHHHHHHHSEEESEEE-SSS-SHHHHHHHHHHSS-HHHHS--SSSEEETTTTEEEEEETTTTGG......... CS
  Phosphodiest   1 vlvislDGlradlldrla.e.llpnlaaLakegvsapnlrpvfPtlTfpnhaslvTGlyPgeHGivgNtfydrktgeyvvfvtededa......... 86 
                   v+vi+ D +  + ++++  e ++pnl+a+a++g +      +  ++++p+ + l+TG +  + G+ g  +yd++ g+   +  + +d+         
    CTQ26906.1  28 VIVIIADDMGYSDISPFGgEiPTPNLQAMAEQGMRMS--QYYTSPMSAPARSMLLTGNSNQQAGMGGMWWYDSTIGKE-GYELRLTDRvttmaerfk 121
                   89***************998**************999..6666789******************************97.999998887777776666 PP

                   ....GGGCTT....S-HHHHHHHTHTTCEEEESE..TTTTSEBTTCT.SC.....................TBHHSBTCT.CSTTS........... CS
  Phosphodiest  87 ....prwwqg....epiwdtaakarglkaaalfw..pgsevdystyyylvs....................etppryleddfnakv........... 142
                       + +  g    + +     k+rg++ a +f    +s ++  +     +                    +        df  ++           
    CTQ26906.1 122 dagyNTLMAGkwhlGFVPGATPKDRGFNHAFAFMggGTSHFNDAIP----LgtveafhtyytrdgervslpD--------DFYSSEayarqmnswik 206
                   5555333333555566888888888888776666443333333322....2334434433333334443220........34444422222344444 PP

                   .........................CHHHHHHHHHHHHHHHCHTHSHHHHHCTSSESEEEEEECCCHHHHHHH-TTSHH.................. CS
  Phosphodiest 143 .........................pledkvdkavlqtwldaafakvvlekelekpdlllvyleetDtvgHkfGpdspe.................. 196
                                            ++ ++++    q + +   ++        +   l +++++t   + ++   ++e                  
    CTQ26906.1 207 atpkeqpvfawlaftaphdplqapdEWIKRFKGQYEQGYAEVYRQR------IARLKALGIIHDDTPMPHLEL---DKEwealtpeqqkytakvmqv 294
                   4455555555555555555555544455555443443333333322......233344444444444444444...222344555577799999999 PP

                   HHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEEH.T...T CS
  Phosphodiest 197 vedalrrvDkaigdLlealderglsaetniilvSDHGmadvs.d...d 240
                    ++ +++ D+ ig L+e l+++g +++t ++ + D G+++ + +   +
    CTQ26906.1 295 YAAMIANMDAQIGTLMETLKQTGRDKNTLLVFLTDNGANPAQgFyyeS 342
                   ****************************************97654322 PP

>> DUF4994  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       2.9   8.7e+03      40      57 ..     274     291 ..     273     296 .. 0.77
   2 !   17.6   0.0   9.2e-07    0.0028      69      96 ..     496     523 ..     486     525 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.9
     DUF4994  40 kkkWkyiePskgpalikl 57 
                 +k+W  ++P++++ ++k+
  CTQ26906.1 274 DKEWEALTPEQQKYTAKV 291
                 689999999998877765 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 9.2e-07
     DUF4994  69 qLydlkkdegekenvaekhpekvkelke 96 
                 qL++l++d+ e+++va++hp++vk+++e
  CTQ26906.1 496 QLFNLHDDPLETHDVAAEHPDRVKAMSE 523
                 9************************986 PP

>> DUF1359  Protein of unknown function (DUF1359)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.5e-06      0.01      15      90 ..     250     324 ..     243     330 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.5e-06
     DUF1359  15 eqkiarlkdvihdvkdqtelvklleddlksneikkddkleleltdrfsvlkssvkinvGtlisllkdniedntali 90 
                 +q+iarlk +   ++d t + +l +d+  +   + ++k+ +++ + ++ + ++++ ++Gtl+  lk+   d  +l+
  CTQ26906.1 250 RQRIARLKAL-GIIHDDTPMPHLELDKEWEALTPEQQKYTAKVMQVYAAMIANMDAQIGTLMETLKQTGRDKNTLL 324
                 799*****75.567889999***********************************************988766665 PP

>> Sulfatase_C  C-terminal region of aryl-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.95   2.8e+03      67      99 ..     278     311 ..     261     325 .. 0.54
   2 ?   13.3   0.0   3.6e-05      0.11      55     102 ..     496     540 ..     469     549 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.95
                  S-TTSTTCCHHHHH.HHHHHHHHHHCCC------ CS
  Sulfatase_C  67 yplsaespeykevl.keikkaveehkktlkpvpn 99 
                    l++e+++y++ + +  ++ ++++++++    +
   CTQ26906.1 278 EALTPEQQKYTAKVmQVYAAMIANMDAQIGTLME 311
                  5566666444433303333344444444444333 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.6e-05
                  EEEETTT-TT--S-TTSTTCCHHHHHHHHHHHHHHHCCC------TCC CS
  Sulfatase_C  55 llFdlerDpsEkyplsaespeykevlkeikkaveehkktlkpvpnqla 102
                   lF+l++Dp E+++++   +e+++ +k++++a+e+++k+   +++q +
   CTQ26906.1 496 QLFNLHDDPLETHDVA---AEHPDRVKAMSEAYEAFAKRTMVTKAQGK 540
                  69**************...7999999*******999887766666655 PP

>> DUF229  Protein of unknown function (DUF229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0031       9.2     200     227 ..     108     135 ..      79     151 .. 0.80
   2 ?    3.7   0.0    0.0065        19     299     344 ..     287     332 ..     284     410 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0031
      DUF229 200 vslDklnfiWkeFkkkGYeTlfaEDiak 227
                    D+++ + ++Fk++GY+Tl+a  +  
  CTQ26906.1 108 RLTDRVTTMAERFKDAGYNTLMAGKWHL 135
                 56799999999***********987765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0065
      DUF229 299 wsnslshdkfnllealDedllkylkklekkgllentlvlllsDHGl 344
                 ++ ++ + + +++  +D ++  ++ +l++ g  +ntl+++l D G 
  CTQ26906.1 287 YTAKVMQVYAAMIANMDAQIGTLMETLKQTGRDKNTLLVFLTDNGA 332
                 6778899999*********************************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.47
# Mc/sec: 3709.55
//
Query:       CTQ26907.1  [L=395]
Description: Anaerobic sulfatase-maturating enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.6e-15   55.7   0.0    1.1e-14   55.2   0.0    1.2  1  Radical_SAM  Radical SAM superfamily
     0.0089   16.2   0.0      0.019   15.1   0.0    1.5  1  Fer4_14      4Fe-4S single cluster domain
  ------ inclusion threshold ------
       0.01   16.1   0.0       0.02   15.2   0.0    1.5  1  Fer4_12      4Fe-4S single cluster domain
       0.16    9.9   0.0       0.22    9.4   0.0    1.1  1  TssR         Type VI secretion system, TssR
       0.36   10.9   1.9       0.97    9.5   1.0    1.9  2  DUF3641      Protein of unknown function (DUF3641)


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0     3e-18   1.1e-14       3     165 ..      31     197 ..      30     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 3e-18
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHH..HHTTSEEEEEE..SSTGGGS.TTHHHHHHHHHHTC...CCTEEEEEEECSSCHGHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx..xxxxxxx.xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelk..aekgvkevilg..ggeplly.pdfvellerlakla...vpgiritvetngtlpdee 92 
                  ++++Cnl+C++C+ p+   +e ++  ++  ++++ ++++   +  g++e+ ++  ggepll    f++++++l ++       i++++ tngtl+++ 
   CTQ26907.1  31 IGPACNLACRYCYYPQ---DETPVNKMDDARLEQFIRRYIaaQPAGAREINFVwqGGEPLLAgLSFYKKALALQARYapdGVTISNSLQTNGTLINDA 125
                  689************9...799999999999999999998867777999988888****995344444444444444999****************** PP

                  HHHHHHHTT.-SEEEEEEBSSSHHHHHHHHT.CTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHH CS
                  xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  93 klerllelg.vdrvslgleaaddekvlklmn.rghtfeevlealeklreagikrvvdrivglpGendeeleelle 165
                  + ++++e g +  +sl  + a  + ++++ + ++ t+++ l+++++l++++++  ++ +v++++e  ++  ++++
   CTQ26907.1 126 WCRLFREHGfIIGLSLEGNEALQD-YHRPDKrGRSTWSAALRGIDLLHQHQVD--FNLLVVVHNEMAAHAAAIYD 197
                  *********777777777777777.999999999*****************99..99999999998888777766 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.4e-06     0.019       8      78 ..      35     104 ..      32     130 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.4e-06
     Fer4_14   8 CnlsCkgCd..nketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeey 78 
                 Cnl+C+ C+  + et  +++     e+ + + ++ ++    +  + v  GGePL+     +++k    l+ +y
  CTQ26907.1  35 CNLACRYCYypQDETPVNKMDDARLEQFIRRYIA-AQPAGAREINFVWQGGEPLL--AGLSFYKKALALQARY 104
                 *********8766666667777777777777774.44444444458999*****4..4555555555555555 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   5.6e-06      0.02      15      68 ..      35      89 ..      32     155 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.6e-06
     Fer4_12 15 CnlsCkgCfnketwsfksgkeft..kelleeiiedlkk.esiegltllGGEPllpen 68
                Cnl+C++C+ ++   + ++ +    ++ +++ i+  +   + + ++  GGEPll   
  CTQ26907.1 35 CNLACRYCYYPQDETPVNKMDDArlEQFIRRYIAAQPAgAREINFVWQGGEPLL--A 89
                *********87766554433332246666666655544467799999******9..3 PP

>> TssR  Type VI secretion system, TssR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   6.3e-05      0.22     383     450 ..     152     216 ..     143     226 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 6.3e-05
        TssR 383 eseskeepvwealkkalellknqknetNlivliGetgnnsenedsslvkalaennarlLfiQlySdeg 450
                  ++++  ++w+a  + ++ll +++   Nl+v++ ++      + + ++++l +  ar L +Q+  +eg
  CTQ26907.1 152 RPDKRGRSTWSAALRGIDLLHQHQVDFNLLVVVHNEMA---AHAAAIYDRLVSLGARYLQFQPLMSEG 216
                 456666789************************77777...999******************866555 PP

>> DUF3641  Protein of unknown function (DUF3641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.39   1.4e+03      16      34 ..     170     188 ..     167     209 .. 0.81
   2 ?    9.5   1.0   0.00027      0.97      61     125 ..     268     335 ..     253     344 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.39
     DUF3641  16 lkeefgieFneLftitnlp 34 
                 l ++++++Fn L+ + n  
  CTQ26907.1 170 LLHQHQVDFNLLVVVHNEM 188
                 778999****999999864 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00027
     DUF3641  61 eetveklmCrsllsvdwdGklydCdfnqmlelklkkkekltikdlleee...lekreiavaehCygCt 125
                  + v++  C s+l ++ dG+ly Cd    +e +l + +++t++   +++     +++ ++++ C +C+
  CTQ26907.1 268 GSCVHSARCGSNLVMESDGQLYACDHLINAEHRLGRLDEQTLAAAVDASvqlPFGQQKSLRRECQTCS 335
                 56788889*****************9888888885555566655554442224566667777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3012.01
//
Query:       CTQ26908.1  [L=227]
Description: Monoamine regulon transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-16   58.2   1.0    8.1e-16   57.3   1.0    1.5  1  GerE          Bacterial regulatory proteins, luxR family
    1.5e-06   27.8   0.0    4.4e-06   26.3   0.0    1.9  1  Sigma70_r4_2  Sigma-70, region 4
    0.00017   21.3   0.4      0.009   15.8   0.0    2.6  2  HTH_23        Homeodomain-like domain
    0.00028   20.3   0.1    0.00079   18.9   0.1    1.8  1  Sigma70_r4    Sigma-70, region 4
    0.00058   19.4   0.1     0.0013   18.2   0.1    1.7  1  HTH_24        Winged helix-turn-helix DNA-binding
     0.0023   17.7   0.3      0.047   13.5   0.1    2.6  3  HTH_10        HTH DNA binding domain
     0.0031   17.2   0.1     0.0081   15.9   0.1    1.8  1  HTH_38        Helix-turn-helix domain
     0.0056   16.7   0.1      0.015   15.4   0.1    1.6  1  HTH_7         Helix-turn-helix domain of resolvase
  ------ inclusion threshold ------
      0.012   16.0   0.0      0.031   14.7   0.0    1.7  1  HTH_40        Helix-turn-helix domain
      0.038   13.4   0.0       0.12   11.8   0.0    1.8  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
       0.07   13.0   0.1       0.11   12.4   0.1    1.3  1  Sigma70_ECF   ECF sigma factor
      0.077   13.1   0.0       0.18   11.9   0.0    1.6  1  HTH_20        Helix-turn-helix domain
       0.13   12.3   0.1       0.19   11.8   0.1    1.3  1  DUF3071       Protein of unknown function (DUF3071)
       0.17   11.5   0.1       0.32   10.6   0.1    1.4  1  HTH_Tnp_IS1   InsA C-terminal domain


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   1.0   6.3e-19   8.1e-16       2      55 ..     161     214 ..     160     216 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 6.3e-19
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvr 55 
                 +L+ +Ere+  ++ eG snk IA++l+iS  TVk+h++ni+ K +v +r+elv 
  CTQ26908.1 161 ILTAKEREIVGMVREGASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVS 214
                 7***************************************************96 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.4e-09   4.4e-06      11      49 ..     162     199 ..     147     203 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.4e-09
                   S-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2  11 LperqreifllryleglsykEIAellgisegtVksrlsR 49 
                   L+ ++rei+ +   eg s k IA++l+is +tVk++l+ 
    CTQ26908.1 162 LTAKEREIVGMV-REGASNKLIARQLDISLSTVKTHLRN 199
                   899********5.6**********************975 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1      0.07        89       2      16 ..     131     145 ..     130     154 .. 0.81
   2 !   15.8   0.0     7e-06     0.009       9      38 ..     168     198 ..     164     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.07
      HTH_23   2 asereRlrillllae 16 
                  +er+R++++l l e
  CTQ26908.1 131 SEERQRAQAVLPLVE 145
                 689********9976 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 7e-06
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvy.rwl 38 
                 +i+ +++eG+s + IAr+L++s +Tv  + +
  CTQ26908.1 168 EIVGMVREGASNKLIARQLDISLSTVKtHLR 198
                 6899**********************84444 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   6.2e-07   0.00079       5      47 ..     162     203 ..     160     203 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.2e-07
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrk 47 
                 L+++ere++ ++++   + + I+++l+iS+++V+ ++++ + k
  CTQ26908.1 162 LTAKEREIVGMVREGA-SNKLIARQLDISLSTVKTHLRNIFAK 203
                 9***********9766.9******************9998876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1     1e-06    0.0013      17      40 ..     176     199 ..     162     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1e-06
      HTH_24  17 risqreLAerlglSpstvnrrlkr 40 
                 + s++ +A++l++S+stv+++l++
  CTQ26908.1 176 GASNKLIARQLDISLSTVKTHLRN 199
                 89********************95 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.31     4e+02      34      46 ..      48      60 ..      46      62 .. 0.88
   2 ?   -2.1   0.0       2.6   3.4e+03       1       9 [.     162     170 ..     162     171 .. 0.89
   3 !   13.5   0.1   3.7e-05     0.047      27      50 ..     180     203 ..     176     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.31
      HTH_10 34 GIskstlsehLrk 46
                +Is++t +++L++
  CTQ26908.1 48 NISDNTHQQYLEN 60
                7**********87 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.6
      HTH_10   1 LTdkqlevl 9  
                 LT k++e++
  CTQ26908.1 162 LTAKEREIV 170
                 8*****986 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 3.7e-05
      HTH_10  27 keLAkelGIskstlsehLrkaesk 50 
                 k +A +l+Is st++ hLr++  k
  CTQ26908.1 180 KLIARQLDISLSTVKTHLRNIFAK 203
                 669****************98766 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   6.3e-06    0.0081       5      42 ..     162     198 ..     159     199 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.3e-06
      HTH_38   5 LsleeReeIerllaeGlslreIArrLgrspsTIsRElk 42 
                 L+  eR eI  +  eG s++ IAr+L+ s sT+  +l+
  CTQ26908.1 162 LTAKER-EIVGMVREGASNKLIARQLDISLSTVKTHLR 198
                 889999.9999**********************99987 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.1e-05     0.015      13      39 ..     168     194 ..     162     197 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
                 GGGSSTTTT--STTTSSSS---SSSS- CS
       HTH_7  13 rvvkLleeGisiskIAkevnisRsTvY 39 
                 ++v +++eG s + IA++++is sTv+
  CTQ26908.1 168 EIVGMVREGASNKLIARQLDISLSTVK 194
                 7999*********************96 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.4e-05     0.031       8      50 ..     172     214 ..     165     222 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.4e-05
      HTH_40   8 lleeglsieeIAkerglkesTIegHLaelieegeeidlerlvs 50 
                 +++eg s + IA++  ++ sT+ +HL ++  + e ++ ++lvs
  CTQ26908.1 172 MVREGASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVS 214
                 899*************************999988888888876 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.5e-05      0.12      17      45 ..     166     194 ..     166     199 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-05
  HTH_Tnp_ISL3  17 eayilelllesrsvkavArqlgvSwtTVw 45 
                   e+ i+ +++e++s k +Arql++S +TV+
    CTQ26908.1 166 EREIVGMVREGASNKLIARQLDISLSTVK 194
                   678999*********************98 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   8.6e-05      0.11     139     180 ..     164     205 ..     145     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.6e-05
  Sigma70_ECF 139 eqarlvelrkleGlsveEiAeklgvskrtverrlalaRawle 180
                  ++ r++ +++ eG s++ iA +l++s +tv+ +l+ + a++e
   CTQ26908.1 164 AKEREIVGMVREGASNKLIARQLDISLSTVKTHLRNIFAKTE 205
                  56799999**************************99988876 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014      0.18      13      46 ..     167     198 ..     156     207 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
                 HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHH CS
      HTH_20  13 rrilraLaraegltaselaerldlskntlsyHLr 46 
                 r+i  +   +eg++ + +a++ld+s +t+  HLr
  CTQ26908.1 167 REIVGMV--REGASNKLIARQLDISLSTVKTHLR 198
                 6677777..99999999****************8 PP

>> DUF3071  Protein of unknown function (DUF3071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00015      0.19      48      91 ..     158     201 ..      95     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
     DUF3071  48 aeeesslrpreIQariRaGasveevaeeagvsververyahPvl 91 
                   +  + + reI  ++R+Gas + +a+++++s + v++    + 
  CTQ26908.1 158 LPAILTAKEREIVGMVREGASNKLIARQLDISLSTVKTHLRNIF 201
                 4445567889**************************98766665 PP

>> HTH_Tnp_IS1  InsA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00025      0.32      13      44 ..     168     199 ..     164     200 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
  HTH_Tnp_IS1  13 kIvemAfNGaGvraTARtlkvGiNTviRtLKn 44 
                  +Iv m   Ga  +  AR l + + Tv  +L+n
   CTQ26908.1 168 EIVGMVREGASNKLIARQLDISLSTVKTHLRN 199
                  79***************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1804.99
//
Query:       CTQ26909.1  [L=390]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-14   51.3  65.2    2.4e-11   43.2  53.1    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2  53.1   1.4e-15   2.4e-11      13     322 ..      38     322 ..      20     326 .. 0.74
   2 !   15.7  30.3   2.9e-07    0.0053       2     167 ..     218     383 ..     217     388 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 1.4e-15
       MFS_1  13 silgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaalia 111
                  +++pa+   la++ ++ p +ig+l+++   ++++a+lp+ +++ r+  rrv l++ ++f+++ l+ ++++++ +ll++r++++l++g+l+ ++++ +a
  CTQ26909.1  38 LMTAPAVAAQLASEWQLKPGQIGWLFSAELGAMSLATLPAWWWMSRLDWRRVALTAGVVFLAANLVSAVVTQYETLLAARFIASLAGGTLMILCISCAA 136
                 2355666667789999********************************9**99999999999945555348877************************* PP

       MFS_1 112 dwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlw 210
                    ++   +r+++++ +g  l  +lg l+ + l + +g  +v++ila+++l ++   l+  + ++ ++  +s ++              +al+++    
  CTQ26909.1 137 GTPNP---SRVYAFWVLGQLLLGMLGLLALPGLFATFGLKVVYLILAAIMLCCLP--LVSAFPPRFQPLSVSRQQP------------STALWRQA--- 215
                 *9999...******************888888888******************55..4777777777777776666............45666666... PP

       MFS_1 211 illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrls..drlgrrrrlllallllllaalglallavtssavllllvl 307
                 ++++a+l+f + +s++ t++ ++  +  gls   ++gl+la++ + g+i+   +g+ +  +r  + r  ++ + +ll++++gl++  +    v ++++ 
  CTQ26909.1 216 LAVLAVLTFYISLSAVWTFIGTI-GSAAGLS-PTQVGLVLAAATVCGIIG--AGGAALrgTRR-ADRLPVWLGYGLLIVSVGLLIGQPL--LVRYAIAA 307
                 388999999999999*******7.*******.455555555555555555..33333311222.3335555555555555555555555..35555566 PP

       MFS_1 308 vliGfglgfvfpsll 322
                 +l+ f++ fv p +l
  CTQ26909.1 308 LLFKFTWTFVLPFIL 322
                 667777777766555 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 2.9e-07
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +la++  +++ s++++++  +++++ g+sp+++gl+l++ ++  ++++  ++  ++r   r  ++lg+ l++++ + ll++++   llv  ++++l   
  CTQ26909.1 218 VLAVLTFYISLSAVWTFIG-TIGSAAGLSPTQVGLVLAAATVCGIIGAGGAALRGTRRADRLPVWLGYGLLIVS-VGLLIGQP---LLVRYAIAALLFK 311
                 5788899999999******.9*********************99999999999999998888999999999999.55552244...9999999999999 PP

       MFS_1 101 alfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvl 167
                 + ++ ++ +i + +++ ++ gr +  +++ ++ G++ gp+l+g+l++++       a+  ++a++sl+++v 
  CTQ26909.1 312 FTWTFVLPFILARVAGlDNSGRLMNSINLVIGGGMAAGPALAGALLQHFAsadpLLAAAGVCALLSLILIVA 383
                 99999999888888888*****************************99997888888888888888888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2730.83
//
Query:       CTQ26910.1  [L=371]
Description: Histone deacetylase-like amidohydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-73  246.2   0.0    8.4e-73  245.5   0.0    1.3  1  Hist_deacetyl  Histone deacetylase domain
  ------ inclusion threshold ------
      0.016   16.0   0.3       0.14   13.0   0.0    2.3  3  PSK_trans_fac  Rv0623-like transcription factor


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.5   0.0   9.4e-77   8.4e-73       3     306 ..      41     328 ..      39     329 .. 0.93

  Alignments for each domain:
  == domain 1  score: 245.5 bits;  conditional E-value: 9.4e-77
                    CGTHHHHHHHHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   3 enpkRlsaileslaesvglldelelliqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavgav 98 
                    e+p+  +++++ +   +gl+++l l  ++ +a+ e+l+++H ++Yle+ + +s++ +                   ++ p+ p++++ a l++g +
     CTQ26910.1  41 ESPETKRRMKNLMDV-SGLTPQLAL-RSAAPASLEDLRRIHPDSYLERFKAISDNGGGML---------------GKEAPLGPGSYEIACLSAGLA 119
                    666666655555555.599998775.999*********************9987766553...............5679***************** PP

                    HHHHHHHHTTSSSEEEETTSS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-CCTSTT.SS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
  Hist_deacetyl  99 leavdavlsgsvkaafvlvrPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafysdpdvltlSiHryegifyP.gt 193
                    ++av+avl+g++++a+ l rPpgHH+ +++ +GFC++ n+ ia+++++a+ +l +vai+D+DvHhGnGt+++  +++dvlt+S+H+  ++ +P g 
     CTQ26910.1 120 CAAVEAVLKGELDNAYSLSRPPGHHCLPDQSMGFCFLANIPIAVERAKAQLGLGKVAIIDWDVHHGNGTQHIYLQRDDVLTISLHQ--DGCFPpGY 213
                    **************************************************************************************..67788788 PP

                    --TT---SGGGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-.G..EEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxx RF
  Hist_deacetyl 194 galedlgegkgkgfnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkv.k.kvvlll 287
                       +d g g+g+g+n+n+pl +g gd+++ +++e+i++p+l++f+P+li++ +G+Da + dpl++++l+ + +  +t+++ + ad+  + k+v++ 
     CTQ26910.1 214 SGEDDRGVGAGEGYNINIPLLAGAGDDSWRYALETIVIPALARFEPELIIIACGYDANAMDPLARMQLHSDSFRAMTEQVQQAADRLcGgKLVMVH 309
                    88999**********************************************************************************999****** PP

                    -S---HHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 288 eGGYnlealaravtavlsa 306
                    eGGY ++ ++ ++ av++a
     CTQ26910.1 310 EGGYAESYVPFCGLAVMEA 328
                    *******999999998876 PP

>> PSK_trans_fac  Rv0623-like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.5e-05      0.14       7      58 ..      42      93 ..      40     104 .. 0.92
   2 ?   -3.5   0.0         2   1.8e+04      26      29 ..     290     293 ..     272     300 .. 0.49
   3 ?   -0.2   0.1      0.19   1.7e+03      32      61 ..     324     362 ..     322     368 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHH CS
  PSK_trans_fac  7 dpeverlareLarltgeskteAvrrAleerlerlrreraepllerllallrr 58
                   +pe++r  + L+++ g + + A r A  + le lrr + ++ ler++a+ + 
     CTQ26910.1 42 SPETKRRMKNLMDVSGLTPQLALRSAAPASLEDLRRIHPDSYLERFKAISDN 93
                   79********************************988***********9876 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2
                    XXXX CS
  PSK_trans_fac  26 teAv 29 
                    te v
     CTQ26910.1 290 TEQV 293
                    2222 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.19
                    XXXXXXXXXXXX.........XX--HHHHHHHHHHHHHT CS
  PSK_trans_fac  32 Aleerlerlrre.........raepllerllallrraaa 61 
                    A+ e+l+ +r e         ++++ ++++ +++r+a +
     CTQ26910.1 324 AVMEALSGIRTEvkdpllefiQQQQPRATFTQFQRQAID 362
                    444444444444444577788888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2805.44
//
Query:       CTQ26911.1  [L=100]
Description: Toxin-antitoxin system, toxin component, RelE family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-32  110.3   0.3    4.7e-32  110.0   0.3    1.1  1  HigB_toxin  HigB_toxin, RelE-like toxic component of a toxin-
  ------ inclusion threshold ------
      0.066   13.1   0.0       0.11   12.4   0.0    1.4  1  CedA        Cell division activator CedA


Domain annotation for each model (and alignments):
>> HigB_toxin  HigB_toxin, RelE-like toxic component of a toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   0.3   5.2e-36   4.7e-32       1      74 []      19      92 ..      19      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 5.2e-36
                CHHHHHHHHHHHHHS--SSHHHHHHH-TT-EE-SSTEEEEEETTTTEEEEEEEETTTTEEEEEEEEEHHHHHH. CS
  HigB_toxin  1 akkaleawykevkkaewksladvkqtfpsadavgnnrvvFnIkgNkyRLivaieyerkkvyirfiltHaeYDki 74
                a+++l+aw++e++ka+wk++a++k +++sa++++n+rvvFnIkgN+yRLiva++y r++v+++fi++H+eYD+i
  CTQ26911.1 19 AEQPLKAWVDEATKADWKTPAEIKDQYRSASILKNKRVVFNIKGNDYRLIVAVAYLRGWVFVKFIGSHKEYDEI 92
                689*********************************************************************86 PP

>> CedA  Cell division activator CedA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.2e-05      0.11      28      54 ..      41      67 ..      17      73 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.2e-05
        CedA 28 kmeeyrdvwvlknkyvafllvgerfrr 54
                  ++yr   +lknk v f + g+ +r 
  CTQ26911.1 41 IKDQYRSASILKNKRVVFNIKGNDYRL 67
                4699*******************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 751.25
//
Query:       CTQ26912.1  [L=120]
Description: XRE family transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-05   25.3   0.0      2e-05   24.6   0.0    1.4  1  HTH_3     Helix-turn-helix
     0.0007   19.6   0.0     0.0011   19.0   0.0    1.3  1  HTH_19    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.2e-09     2e-05       2      53 ..      65     115 ..      64     117 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.2e-09
                 HHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3   2 kelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53 
                 k +++q+gl+ ++L  ++G + + ++ i nG rn +l ++ +l   +g++l+
  CTQ26912.1  65 KFRMEQQGLTVKDLEPAIG-KSNRVYEILNGTRNLTLPMIRRLHAQFGIPLE 115
                 66778**************.58999*************************98 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.2e-07    0.0011       9      60 ..      69     118 ..      61     119 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.2e-07
      HTH_19   9 eelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyll 60 
                 e+ glt ++l+  +g   ++ ++i ng + +++ ++++++   +gi+le l+
  CTQ26912.1  69 EQQGLTVKDLEPAIGK-SNRVYEILNGTR-NLTLPMIRRLHAQFGIPLESLI 118
                 889*************.***********9.9999**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 910.72
//
Query:       CTQ26913.1  [L=180]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-62  210.0   0.1      2e-62  209.8   0.1    1.0  1  DUF3156   Protein of unknown function (DUF3156)


Domain annotation for each model (and alignments):
>> DUF3156  Protein of unknown function (DUF3156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.8   0.1   1.1e-66     2e-62       1     161 []      17     174 ..      17     174 .. 0.99

  Alignments for each domain:
  == domain 1  score: 209.8 bits;  conditional E-value: 1.1e-66
     DUF3156   1 rdLaavrcealsaesarltlpdglevevrervqrqflahivsvefrlkvaaslaakarirvrqtGwlrRkgvaaalrkgadaelallaaLnadpalqea 99 
                 rdLa++ +e+ls++sa l+l+d+++v+++ r++r+f+a+i+s+ef ++++++++ +++ir++q+Gw++R++++++ +k + +   l+ +Ln++p+lq++
  CTQ26913.1  17 RDLAGWPSEKLSERSALLRLNDATAVTFSVRQKRLFMASIHSCEFVVEGPVTRPVRGNIRAHQSGWWKRQPIRFIGGKDSTE---LAGYLNGFPNLQQT 112
                 79**************************************************************************999966...************** PP

     DUF3156 100 LaeLdfrrlelvldesgWtlsiehfaasEvvnrlPafRRYlrLaaeQrvaLlsalaeleqll 161
                 L+eLd+rr++l++d+sgW++sie++aasEvv+++P++RRYlrL+a+Qr++Lls+la+++q++
  CTQ26913.1 113 LSELDYRRFSLTFDSSGWRCSIEPWAASEVVCKMPPLRRYLRLEAQQRMLLLSVLAMVNQAV 174
                 ***********************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1344.12
//
Query:       CTQ26914.1  [L=499]
Description: putative amino acid/amine transport protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-35  121.6  42.0    4.6e-35  121.3  42.0    1.1  1  AA_permease_2  Amino acid permease
    4.1e-17   62.0  34.9    6.6e-17   61.3  34.9    1.3  1  AA_permease    Amino acid permease
  ------ inclusion threshold ------
      0.025   14.6   0.1      0.094   12.7   0.1    2.0  1  DUF1422        Protein of unknown function (DUF1422)
      0.034   14.3   3.6      0.034   14.3   3.6    4.8  6  YbgT_YccB      Membrane bound YbgT-like protein


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.3  42.0     1e-38   4.6e-35       2     405 ..      16     430 ..      15     456 .. 0.81

  Alignments for each domain:
  == domain 1  score: 121.3 bits;  conditional E-value: 1e-38
  AA_permease_2   2 sllsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasi 95 
                    ++ +++a ++g+++ s+++ +   +++ gg +++l v++a +++  a++ ++aE ++++p+ g +y y ++++g+++a + a ++ +   +++ + 
     CTQ26914.1  16 GFPTTLASSVGLIMASPVILTVtsGFGMGGDTFALAVLLAFIMM-QAQVTTFAEAATLIPTTGSVYDYISCGMGRFFAITGALCAYLIVHIFAGTA 110
                    6888999999999888877664557888999*999999999998.5******************************99776666644444444444 PP

  AA_permease_2  96 lsvaasyllnalgpdlqgn...twltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwp 188
                     +++a+ ++ + +++++ +      t +++++ ++++ l+n++g+ + +k+ ++l+   +  +l+i+ ++g++++ + ++ s  + ++  + +  +
     CTQ26914.1 111 ETILAGIMALVNFESINAQmaaHQNTWMVGVGMVVIFGLLNAIGVEIFGKVEVVLTFGMW-TTLTIFGLCGIFMA-PVTHLS-GWFGTPLNVSDIN 203
                    45555555554455444433344488999***************************9999.6************8.444442.2333456666777 PP

  AA_permease_2 189 gvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsv......aalffeavggkvvaiiv 276
                    g ++ ++++++ f+G e ++ ++ e+k+  +++p+a+ +gll v+ + + +  a+   v    ++  +n++ +      + +f+e+v g ++++ +
     CTQ26914.1 204 GLFGYIGMAMFMFVGCELVTPMAPEIKQahRTIPRAMALGLLGVASCMFIYGAAINRQVENTVLDAANNVH-LldtpmaIPAFAERVMGHAGQYWL 298
                    78***********************998889******9999999999888877666666666665555544.1466766899************** PP

  AA_permease_2 277 vilialsllgaintavigssrvlealardgvlPrffakvn.kfgspiraiiltaivslillllfllassaayn...fllsvsslgliisyllliig 368
                     +++ l+ +  int++++++r+++ +a dg+lPrf+   + +f++p+ ai + + + ++ +  ++l+   +++    l  +++++  + yll+ ++
     CTQ26914.1 299 GVGLLLAGCATINTLMAAVPRIIYGMALDGALPRFLTWLHpRFKTPVIAIAIGVAIPCLHA--WYLN--GDLDrivPLILAAVCAWGVAYLLVTLS 390
                    ****************************************************999998764..5553..44444444445556666689******* PP

  AA_permease_2 369 alilrkkrphlkr....pgkilvaiigalfllfllvalffp 405
                    +++lr++rp+l+r    p+++l+ ii+ +++++++v++  p
     CTQ26914.1 391 VVMLRIRRPDLPRayrsPWFPLPQIISSVGIIIAIVNIT-P 430
                    ***********999999999***************9975.3 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3  34.9   1.5e-20   6.6e-17      13     385 ..      25     394 ..      19     429 .. 0.71

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 1.5e-20
  AA_permease  13 tglfvglgvvlsqaGplga.....llayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGln.ylfswitvlaleltaasil..iq 102
                  +gl++++ v+l   ++ g+      la+lla++++ + + +++e at++p +g+ y y+s  +g+ ++ + +l  yl++ i++ ++e++ a+i+  ++
   CTQ26914.1  25 VGLIMASPVILTVTSGFGMggdtfALAVLLAFIMMQAQVTTFAEAATLIPTTGSVYDYISCGMGRFFAITGALCaYLIVHIFAGTAETILAGIMalVN 122
                  4444444444433322222234559********************************************999999************76655431133 PP

  AA_permease 103 fwel...vtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeega 197
                  f +    + +   +w++g+ ++v++ ++n +gv+ +g++e++l++    ++ +f ++gi++    +++       +g ++       +++        
   CTQ26914.1 123 FESInaqMAAHQNTWMVGVGMVVIFGLLNAIGVEIFGKVEVVLTFGMWTTLTIFGLCGIFMAPVTHLSGW-----FGTPLN------VSD-------- 201
                  32221122233346666*************************9999999999999999544333333333.....344444......556........ PP

  AA_permease 198 fknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvvi...ritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlapli 292
                  + + ++ +  ++f f G elv+ +a E+k   ++iP+a+   ++     +++Y  ++   +   + ++ +++    ++   +  f +  +  + +  +
   CTQ26914.1 202 INGLFGYIGMAMFMFVGCELVTPMAPEIKQAHRTIPRAMALGLLgvaSCMFIYGAAINRQVENTVLDAANNVHLLDTP-MAIPAFAERVMGHAGQYWL 298
                  99*************************************765541004445555555555555555555555533333.3344566666667777789 PP

  AA_permease 293 naviltaalssansslysasRvlyslakdglaPkvlkk.vskrgvPlraillsmiisllal..llaslnlaapivfnfllaisaliglivwlliil 385
                   +++l+a   ++n ++++ +R++y +a dg++P++l++ + + + P+ ai++  +i +l    l+  l  ++p + + + a   ++ l+++ +++l
   CTQ26914.1 299 GVGLLLAGCATINTLMAAVPRIIYGMALDGALPRFLTWlHPRFKTPVIAIAIGVAIPCLHAwyLNGDLDRIVPLILAAVCAWGVAYLLVTLSVVML 394
                  99*******************************9998835799***************98833444444444444444444444444444444443 PP

>> DUF1422  Protein of unknown function (DUF1422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   2.1e-05     0.094      14      74 ..     320     382 ..     309     412 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.1e-05
     DUF1422  14 liaGlslngtlsalfsslvpfsifplialv..lavyclyqrYlnksleeglPllalacfllGv 74 
                 +i G++l+g+l  + + l p    p+ia++  +a+ cl+  Yln  l++ +Pl+ +a+   Gv
  CTQ26914.1 320 IIYGMALDGALPRFLTWLHPRFKTPVIAIAigVAIPCLHAWYLNGDLDRIVPLILAAVCAWGV 382
                 688999999998877777766666777655117889******************999877776 PP

>> YbgT_YccB  Membrane bound YbgT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.56   2.5e+03      11      21 ..      20      30 ..      19      31 .. 0.86
   2 ?   -3.6   0.9         3   1.4e+04      12      17 ..      50      55 ..      49      58 .. 0.64
   3 ?   -2.5   0.1       1.4   6.2e+03      14      25 ..     113     124 ..     113     125 .. 0.81
   4 ?   14.3   3.6   7.7e-06     0.034       5      25 ..     136     156 ..     136     157 .. 0.94
   5 ?   -0.8   1.7      0.38   1.7e+03       8      23 ..     300     314 ..     296     315 .. 0.70
   6 ?   -3.5   0.2       2.8   1.3e+04      16      22 ..     419     425 ..     418     426 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.56
   YbgT_YccB 11 lLAvlfgilna 21
                +LA ++g ++a
  CTQ26914.1 20 TLASSVGLIMA 30
                7999**99998 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3
   YbgT_YccB 12 LAvlfg 17
                LAvl++
  CTQ26914.1 50 LAVLLA 55
                677776 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.4
   YbgT_YccB  14 vlfgilnalwlE 25 
                 +l gi++ + +E
  CTQ26914.1 113 ILAGIMALVNFE 124
                 678999999888 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 7.7e-06
   YbgT_YccB   5 aWiLGvlLAvlfgilnalwlE 25 
                 +W++Gv++ v fg lna+  E
  CTQ26914.1 136 TWMVGVGMVVIFGLLNAIGVE 156
                 7*****************988 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.38
   YbgT_YccB   8 LGvlLAvlfgilnalw 23 
                 +G+lLA  ++++n+l+
  CTQ26914.1 300 VGLLLA-GCATINTLM 314
                 577776.578888876 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 2.8
   YbgT_YccB  16 fgilnal 22 
                 +gi++a+
  CTQ26914.1 419 VGIIIAI 425
                 7888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 3257.31
//
Query:       CTQ26915.1  [L=121]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-20   70.0   0.6    1.2e-19   69.8   0.6    1.1  1  Cupin_3   Protein of unknown function (DUF861)
    2.2e-06   27.3   0.3    1.1e-05   25.0   0.3    2.0  1  Cupin_2   Cupin domain
  ------ inclusion threshold ------
      0.043   13.6   0.0      0.047   13.4   0.0    1.1  1  EutQ      Ethanolamine utilisation protein EutQ


Domain annotation for each model (and alignments):
>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.6     2e-23   1.2e-19       2      74 .]      41     114 ..      40     114 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 2e-23
                 TCCTCCEEEEEEEECEEEEECESSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTEEECCCEEEE.EEEEE CS
     Cupin_3   2 gelgvfswgiwectpGkfrltyeedEfcyileGevkvtpeggetvelraGDlvvlpkglsgtwdvset.vrKaY 74 
                 ++++ f++g++++t G f++ty+ +E++++leGev++t++gge+ ++ +GD++++++g++++w++  + + K+Y
  CTQ26915.1  41 EPQDAFTCGLFSSTEGSFTMTYPFTEHATVLEGEVELTVAGGEPQRFAPGDSWFVKQGTEVEWKILTPrFVKHY 114
                 67899********************************************************************9 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.3   1.9e-09   1.1e-05      21      54 ..      66     100 ..      63     121 .] 0.91

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.9e-09
                 EEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT-E CS
     Cupin_2  21 effyVleGegelt.vdgeeveleaGdsvyfpagtp 54 
                 e   VleGe+elt  +ge+++  +Gds++++ gt+
  CTQ26915.1  66 EHATVLEGEVELTvAGGEPQRFAPGDSWFVKQGTE 100
                 6679*********888***************9986 PP

>> EutQ  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.9e-06     0.047      68     135 ..      37     105 ..      17     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.9e-06
        EutQ  68 lvtleeskrlgaGlmemkettfdwtlnydeidyvieGrldvlidG.rkvvaeaGdviliPkgskiefsv 135
                 ++ +e  + ++ Gl    e  f  t  + e   v+eG++++ + G       +Gd  ++ +g+++e+ +
  CTQ26915.1  37 MIYGEPQDAFTCGLFSSTEGSFTMTYPFTEHATVLEGEVELTVAGgEPQRFAPGDSWFVKQGTEVEWKI 105
                 56777888999*****************************9887615566789******9999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 964.44
//
Query:       CTQ26916.1  [L=433]
Description: FAD-dependent oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-40  140.1   0.1    1.5e-40  139.8   0.1    1.0  1  DAO             FAD dependent oxidoreductase
      7e-07   28.7   0.4    1.2e-06   27.9   0.4    1.3  1  Thi4            Thi4 family
    7.7e-06   25.4   2.2     0.0011   18.3   0.8    2.3  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    1.1e-05   24.8   1.1    2.4e-05   23.7   0.5    1.7  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    8.8e-05   21.8   3.3    0.00021   20.5   2.4    1.9  2  FAD_binding_2   FAD binding domain
     0.0001   21.7   0.1    0.00013   21.3   0.1    1.3  1  FAD_binding_3   FAD binding domain
    0.00012   21.6   0.6    0.00015   21.3   0.6    1.2  1  FAD_oxidored    FAD dependent oxidoreductase
     0.0017   18.5   3.1     0.0035   17.6   1.9    2.0  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0035   17.9   4.1       0.11   13.0   1.6    3.0  3  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.022   13.5   1.2       0.13   10.9   0.6    2.1  2  HI0933_like     HI0933-like protein
      0.069   13.1   0.9       0.36   10.8   0.9    2.1  2  NAD_binding_9   FAD-NAD(P)-binding
      0.073   12.1   1.6        0.1   11.7   1.6    1.2  1  GIDA            Glucose inhibited division protein A
       0.11   11.3   1.9       0.18   10.6   1.9    1.3  1  Trp_halogenase  Tryptophan halogenase
       0.16   11.0   0.3       0.25   10.4   0.3    1.2  1  Lycopene_cycl   Lycopene cyclase protein


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.8   0.1   1.2e-43   1.5e-40       1     351 [.      31     385 ..      31     386 .. 0.82

  Alignments for each domain:
  == domain 1  score: 139.8 bits;  conditional E-value: 1.2e-43
                 EEEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTSSGGGSSEEEEESSS.....STHHSTH..........HHHHHHHHHHHHHHHHHHHHSSTTSE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg...VtllekgdiagsgaSgrnsgllhsgl.....rylpeas..........elarlslealeelreleeelgididy 81 
                 dvviiGGG  G+ tA+eLa++g   V++le++  +g g +grn+g++++g+     +                 l++ +  +   +re  ++++id d+
  CTQ26916.1  31 DVVIIGGGFSGINTALELAEQGitnVVVLEAR-HLGYGGTGRNGGQVMAGIghdieA-----VkkhvgkegleTLFKIANLGAGIIRERIRKYNIDADF 123
                 9*******************************.99****************755431.....234567777776668899998999999999******9 PP

                 EEEEEEEEESSHHHHHHHHHHHHHHHHTTTTE..EEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETC CS
         DAO  82 rrtGllslaadeeelealdkllallleaglda..elldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgk 178
                   +G+ +la+++++l  l+++ ++ ++a +d+  el +++ev+++   ++ ++gal   ++gq++   ++ + a+aa +lGv+i+e ++v+++ ++ gk
  CTQ26916.1 124 V-PGYGYLAYNQRQLKTLRQWEKEFKAATPDEeiELYTGKEVQQVVG-SEVYCGALKHMGGGQIHSLNMLLGSAQAAHSLGVKIFESSPVVEV-NY-GK 218
                 9.9*********99**9988888885555544248899999*****7.55788***************************************9.54.56 PP

                 EEEEEEECT.EEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE..EEETTTTEEEEEETTSEEEEEESSEEETT CS
         DAO 179 vwgverttp.gendaadavVnaaGawsdllgllkeldlpispvrgqvlvlkplseklvspaailpvpe..tdddgrgvyvtprkdgrvlvGgtadeesg 274
                  ++v   t+ g++ +a ++  a+  + +  ++ +e+  ++  + ++ + ++pls++l +   i p++   +d +    y++ ++++r+l+G+      +
  CTQ26916.1 219 QVRV--RTAmGSV-KAAKLLWACDSFLN--NMEPEIYNKTLVTYSYQVSTEPLSDELIE--RISPLRGafSDIRPVINYYRVTRENRLLFGSA----TR 306
                 6788..6676986.44679999998844..22344434556788899999999996544..566666666777788888888889******96....45 PP

                 CSSTSCSHHHHHHHHHHHHHHSGGGCGEE..EEEEEEEEE.TTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHH CS
         DAO 275 dddpevdeedidellealrklfPqlgdvl..rkwaGlrpl.pdglpligetpgvkglylatGhsghGltlapatGkllae 351
                 + +  ++ + +++ +  l+++fP l+dv+   +w G +++  + +p ig    +++++++ G+sg G+t +  + k+lae
  CTQ26916.1 307 FVE-YTPNDFAAWNRTLLAEVFPYLRDVKidFAWGGPMACsANLFPQIGTLRDHNNVFYVQGYSGFGVTPSHIVCKILAE 385
                 666.444478888***********97755327****99974677******76789***********************98 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.4   9.6e-10   1.2e-06      11      65 ..      23      78 ..      15      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 9.6e-10
                HHHHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEE.SSSS--TTTTTTSTTBS CS
        Thi4 11 dllkyaesDvvivGaGssGLtaayylakkpdlkvaile.rsvspGGGawlGGqlfs 65
                 l + +e+Dvvi+G+G sG+ +a  la++   +v++le r++ +GG    GGq+  
  CTQ26916.1 23 ALREDIEADVVIIGGGFSGINTALELAEQGITNVVVLEaRHLGYGGTGRNGGQVMA 78
                567789***********************778999**9457999999999**9875 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.8   8.8e-07    0.0011       1      33 [.      33      65 ..      33      67 .. 0.94
   2 !    6.2   0.0    0.0042       5.4      89     155 ..     196     260 ..     135     270 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.8e-07
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnig 33
                 +IiG+G  G+++a+el + g++++++lE  ++g
   CTQ26916.1 33 VIIGGGFSGINTALELAEQGITNVVVLEARHLG 65
                 7***************************98776 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0042
  Pyr_redox_3  89 evaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhysk 155
                  + a+s  ++i + + V +v+   ++ +v+t  ++++A k+++A   f +   ++i  ++ lv+ +++
   CTQ26916.1 196 QAAHSLGVKIFESSPVVEVNYG-KQVRVRTAMGSVKAAKLLWACDSFLNNMEPEIYNKT-LVTYSYQ 260
                  5666777788888888888876.589*****************9999888888887776.4444444 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.5   1.9e-08   2.4e-05       2      58 ..      31     101 ..      30     148 .. 0.71
   2 ?   -2.0   0.0       1.3   1.6e+03     184     214 ..     142     172 ..     121     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.9e-08
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHH...HCHHHHHHHHHHHHH............H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx............x RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcll...skallgvaedaeias............e 58 
                  dvv+iGgG+ G+++al+la++g+  ++v le  +l+ g       ++++g+++d e ++            +
   CTQ26916.1  31 DVVIIGGGFSGINTALELAEQGITNVVV-LEARHLGYGGTGrngGQVMAGIGHDIEAVKkhvgkegletlfK 101
                  8**********************99999.7777777777764555688999999988885555555544431 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
                  HHHHHHHHHHHHTTEEEEESCEEEEEEETTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 184 elsaaleealekeGvevklgtsvkeidgnge 214
                  +++++ ++a  +e +e+++g++v+++ g + 
   CTQ26916.1 142 QWEKEFKAATPDEEIELYTGKEVQQVVGSEV 172
                  6677777778888899999999988888776 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   2.4   1.7e-07   0.00021       1      32 [.      31      63 ..      31      86 .. 0.91
   2 ?   -0.6   0.0      0.42   5.4e+02     110     146 ..     131     167 ..     111     231 .. 0.52

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.7e-07
                   SEEEE--SHHHHHHHHHHHHTTT.-EEEEESSS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGl.kvavvekeq 32
                   Dv++iG+G++G   Ale+ae+G  +v+v+e  +
     CTQ26916.1 31 DVVIIGGGFSGINTALELAEQGItNVVVLEARH 63
                   9**********************9****99765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.42
                    SB-EEE-TT-SSTEEEE-.STT-.......HHHHHHHH CS
  FAD_binding_2 110 pvdvrelGglsatartlhdaadarr.etlvtghallar 146
                    ++++r+l +l+++ +  ++aa++ + ++l tg+++  +
     CTQ26916.1 131 AYNQRQLKTLRQW-EKEFKAATPDEeIELYTGKEVQQV 167
                    5666777777777.333334444444444444444332 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1     1e-07   0.00013       1      31 [.      29      59 ..      29     168 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1e-07
                   EEEEEEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrvvlve 31
                   e+dV+I+G+G +G+ +al+L+e+G+ +v+v 
     CTQ26916.1 29 EADVVIIGGGFSGINTALELAEQGITNVVVL 59
                   579**********************977763 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.6   1.2e-07   0.00015       1      54 [.      31     101 ..      31     191 .. 0.60

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.2e-07
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaee.................q 54 
                   Dvv++GGg +G+  A+  a++G + ++v e ++lG   t+  ++ ++    ++                 +
    CTQ26916.1  31 DVVIIGGGFSGINTALELAEQGITNVVVLEARHLGYGGTGRNGGQVMAGIGHDieavkkhvgkegletlfK 101
                   9***********************99999999998444444443333322222221333334445545542 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.9   2.7e-06    0.0035       1      32 [.      34      65 ..      34      87 .. 0.81
   2 ?   -1.4   0.0       2.2   2.8e+03      32      55 ..     182     209 ..     179     216 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.7e-06
                   EE--SHHHHHHHHHHHCCTE.EEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagf.dvlllekrdrlG 32
                   I+G+G+sG  +A +La++g+ +v++le+r +lG
     CTQ26916.1 34 IIGGGFSGINTALELAEQGItNVVVLEAR-HLG 65
                   9*******************77*****98.443 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.2
                    SGGG-EECE....TTCEECTS---EEET CS
  NAD_binding_8  32 GGraasyev....pgvrvdygahifhgs 55 
                    GG+++s ++     + ++ +g+ if +s
     CTQ26916.1 182 GGQIHSLNMllgsAQAAHSLGVKIFESS 209
                    7888888887744448888999998774 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   1.6   8.8e-05      0.11       2      31 ..      32      62 ..      31      79 .. 0.83
   2 ?    3.7   0.0      0.07        89      46      70 ..     147     171 ..     137     175 .. 0.80
   3 ?   -2.5   0.0       6.4   8.2e+03      52      71 ..     200     219 ..     195     225 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.8e-05
                EEEECSSHHHHHHHHHHHHTT.SEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelg.kkVtvvers 31
                vv++GgG++g+  A +lae g  +V v+e++
  CTQ26916.1 32 VVIIGGGFSGINTALELAEQGiTNVVVLEAR 62
                8******************995677776655 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.07
                 HHHHHHHTTEEEECSEEEEEEEEET CS
   Pyr_redox  46 lqeklekngievllntkveeiegse 70 
                 ++    ++ ie++++++v++++gse
  CTQ26916.1 147 FKAATPDEEIELYTGKEVQQVVGSE 171
                 555556779*************987 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 6.4
                 HTTEEEECSEEEEEEEEETT CS
   Pyr_redox  52 kngievllntkveeiegsed 71 
                  +g+++  ++ v+e++  ++
  CTQ26916.1 200 SLGVKIFESSPVVEVNYGKQ 219
                 45888888888888874443 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6    0.0001      0.13       2      32 ..      31      62 ..      30      71 .. 0.84
   2 ?    0.8   0.0      0.12   1.6e+02     117     161 ..     196     237 ..     142     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
                 SEEEE--SHHHHHHHHHHHHTT.--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrg.krVllleka 32
                 dv++iGgG +G+ +A+++a++g  +V++le+ 
   CTQ26916.1 31 DVVIIGGGFSGINTALELAEQGiTNVVVLEAR 62
                 8*****************88883578888864 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.12
                  HHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE- CS
  HI0933_like 117 kelkeagvklrletevksvekeedgkfrvktkseeeleadklvlA 161
                  +++++ gvk+  ++ v +v  + ++++rv+t   ++++a+kl+ A
   CTQ26916.1 196 QAAHSLGVKIFESSPVVEV--NYGKQVRVRT-AMGSVKAAKLLWA 237
                  5677899***********9..5567789999.8899999999987 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   0.00028      0.36       1      40 [.      33      68 ..      33      76 .. 0.86
   2 ?   -1.1   0.0       1.3   1.7e+03      13      37 ..     188     212 ..     181     232 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00028
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagr 40
                   +i+G+G++G+ ++ +L+++      +++ + + +++g g+
     CTQ26916.1 33 VIIGGGFSGINTALELAEQ----GITNVVVLEARHLGYGG 68
                   7****************99....58899999998887666 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.3
  NAD_binding_9  13 lerLlarakkkspleitlfdpsepg 37 
                    l+ Ll +a+ +++l +++f+ s+  
     CTQ26916.1 188 LNMLLGSAQAAHSLGVKIFESSPVV 212
                    66778888889999*****999876 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.6     8e-05       0.1       1      28 [.      31      58 ..      31      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi 28
                dv++iGgG +G+  Al++a+ G+  + +
  CTQ26916.1 31 DVVIIGGGFSGINTALELAEQGITNVVV 58
                79********************975544 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.9   0.00014      0.18       1      43 [.      31      71 ..      31      76 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00014
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS-E CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvGe 43
                    ++vi+GGG +G  +A  la+++   ++v ++e+ ++g  g G+
      CTQ26916.1 31 DVVIIGGGFSGINTALELAEQG--ITNVVVLEARHLGYGGTGR 71
                    69******************99..589*********9999886 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00019      0.25       1      32 [.      31      61 ..      31      68 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00019
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpgl.kvvliea 32
                   Dvv+iG+G  g+  A +l  a++g+ +vv++ea
     CTQ26916.1 31 DVVIIGGGFSGINTALEL--AEQGItNVVVLEA 61
                   9*****************..5555526777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3305.82
//
Query:       CTQ26917.1  [L=494]
Description: Phenylacetaldehyde dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.6e-157  522.3   0.0   1.1e-156  522.0   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.023   13.8   0.0      0.034   13.2   0.0    1.2  1  LuxC      Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  522.0   0.0  1.2e-160  1.1e-156       7     462 .]      32     490 ..      26     490 .. 0.98

  Alignments for each domain:
  == domain 1  score: 522.0 bits;  conditional E-value: 1.2e-160
                 SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHHH CS
      Aldedh   7 etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyaela 104
                   ++vinPatg+ ia+v+aa+++++d+a+++A++af++w+++p   R+++L k+ad l+e++e la+le+l  Gk+++ ar  e+++++ +lry+a++a
  CTQ26917.1  32 APFAVINPATGQAIAEVTAADSDQADRAMESARQAFSQWREMPTLARGALLLKLADTLAEHREALAQLESLCSGKTITLARMlELDQSVAFLRYFAGWA 130
                 4499*********************************************************************************************** PP

                 HHHSEEEEEEC......TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHH CS
      Aldedh 105 eklegevlpss......egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevg 197
                  k++ge+l +s      e+++a++rr+PlGvv+ I+PWNf +++a+wkla+al++G+t+vlKP+e tpl+ l++ael++++g+P+gv+nvv+g g e++
  CTQ26917.1 131 GKVTGETLDVSlpsmagEKYTAFTRRQPLGVVVGIVPWNFSIMIAIWKLAAALVCGCTIVLKPSEYTPLTLLRVAELAKAVGIPDGVINVVNGAGGEIA 229
                 *******77655677799********************************************************************************* PP

                 HHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT- CS
      Aldedh 198 ealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakkl 296
                 + l++hp ++kvsftGs+++g+k++++a+++ krvtlElGGkn+++ l+d   +++v++i+++ ++n+GQ+C aa+r++++++  d++++ l+++++++
  CTQ26917.1 230 QRLITHPACAKVSFTGSVATGEKVQQSASASGKRVTLELGGKNAALFLDDLTPEAMVNGIIEAGYLNQGQICAAAERFYLPQGKLDAVLALLKDKLSAF 328
                 *************************************************************************************************** PP

                 -BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSE CS
      Aldedh 297 kvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdtey 395
                   g+plde t +GPl++++q++kv +++++a++eg ++++Gg   ea + +gyf++Pt ++  ++++++++eE+FGPV s i +++eeea++ +N+++y
  CTQ26917.1 329 APGSPLDERTLMGPLANRQQYDKVLRLIQTARDEGDTIVCGG---EALPGEGYFLQPTAVKVRSEESTLMREETFGPVCSFIGYRSEEEALARMNASPY 424
                 ******************************************...7899************************************************** PP

                 ESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 396 GLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 GLaa+v+++++++a+r++e++eaG v++N +t  ++   pfgG+k Sg+Gre g++ +++yte+k+v
  CTQ26917.1 425 GLAASVWSDNIRQALRYSEAIEAGIVWVNMHTFLDPAV-PFGGMKGSGIGREFGSAFIDDYTELKSV 490
                 *******************************9999999.**************************97 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.8e-06     0.034      79     136 ..     148     206 ..     138     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-06
        LuxC  79 tkeksyekaqprglvlhvlsgN.vpllpvmsilqglLvknvnllkvSssdpflaaallk 136
                 +k+  + ++qp g+v+ +++ N + +++++ ++ +l+++  ++lk+S   p +  +++ 
  CTQ26917.1 148 EKYTAFTRRQPLGVVVGIVPWNfSIMIAIWKLAAALVCGCTIVLKPSEYTPLTLLRVAE 206
                 56679*****************456789*******************999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3824.86
//
Query:       CTQ26918.1  [L=33]
Description: hypothetical protein CH1034_140063 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       112  (0.00624686); expected 358.6 (0.02)
Passed bias filter:                      104  (0.00580066); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.26s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 260.62
//
Query:       CTQ26919.1  [L=360]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-10   41.6   0.0    4.8e-05   23.1   0.0    3.1  2  SGL            SMP-30/Gluconolactonase/LRE-like region
    4.1e-06   26.6   0.3    9.4e-05   22.1   0.2    2.7  1  PQQ_2          PQQ-like domain
    1.4e-05   25.4   0.7        6.2    7.5   0.0    5.5  7  PQQ_3          PQQ-like domain
    0.00092   19.0   3.2      0.058   13.3   0.1    4.3  4  PQQ            PQQ enzyme repeat
  ------ inclusion threshold ------
      0.016   14.5   0.1        0.7    9.1   0.0    2.9  3  Lactonase      Lactonase, 7-bladed beta-propeller
      0.072   13.2   0.0       0.16   12.0   0.0    1.6  1  Ribosomal_L14  Ribosomal protein L14p/L23e


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.6e-08   4.8e-05      90     181 ..      53     142 ..      23     151 .. 0.83
   2 !    9.2   0.0   0.00028      0.83     152     244 ..     242     336 ..     240     338 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.6e-08
         SGL  90 DgvvdpdGr.lwfGtmgdeeakgeevgalyrldpdgklervlddltipN.GlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkk 181
                 +++ +p+G  l++ + + +++ +   ga+y ldp++  +  l+++   N +l +s++gktlY+ +sl + i+a+d +  +gk++nr +f + ++
  CTQ26919.1  53 EMALSPQGDaLYVASAEGFKNVQG--GAVYTLDPHTLNTIGLTHTDLKNfALQLSAEGKTLYVSNSLDGGISAIDTA--TGKVKNRLLFSERNE 142
                 678899998899999998888888..*********6667777888888889***********************994..666999998866544 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00028
         SGL 152 Dsltrkiwaydvdaeggklsnrrvfadlkkge.....gepDGlavDa...eGnvwvAvwgggkvvrfdpd.GklieeiklpakrvtscaFgGpdlrtLy 241
                 Ds t+++++ d ++ ++     ++++d+  g+      + D+lav      +++++ + ++gkv+ +d    +l + ++lp +++ s+ +  +d +tL+
  CTQ26919.1 242 DSDTGRLFVTDNSKAKT-----TLVLDIHSGKllkqlDVGDSLAVQFnkkRHEIYISQRESGKVISLDASrYTLKKSWALP-ANPNSLLL-SADGQTLF 333
                 67777777777766555.....4445555555555555679999874223678****************9899999*****.99999999.6899**** PP

         SGL 242 its 244
                 +t 
  CTQ26919.1 334 VTV 336
                 *96 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2   3.2e-08   9.4e-05      25     141 ..      97     219 ..      75     358 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.2e-08
       PQQ_2  25 lgggvsravlsggtlfva.tgggrlvaldaatGkvlWettlegpvvga.......plvaegrvvvvasdg..qlialdaedGkrlWstqqrseepaelr 113
                 l +   + + +g+tl+v  +  g ++a+d+atGkv+ +  +++++ +         l+ ++ ++v a  +  q++ +da++ k++ +++ ++    + +
  CTQ26919.1  97 LKNFALQLSAEGKTLYVSnSLDGGISAIDTATGKVKNRLLFSERNEKGrpygarqLLLLNNTLYVGAVADpaQIWVVDATTLKLKTRIKNTG----KWM 191
                 555555667799******89********************98886655767777777777777998855559************87766666....445 PP

       PQQ_2 114 ssaspavagdtvvvgessgklvaldpkd 141
                 +    +   ++v+++  sg++ +++p++
  CTQ26919.1 192 TGLHYSAQTGRVYAANGSGEILVINPRN 219
                 5555666677888888888888888885 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0076        23      17      40 .]      54      86 ..      23      86 .. 0.82
   2 !    7.5   0.0    0.0021       6.2      19      40 .]     106     128 ..      96     128 .. 0.90
   3 ?    0.7   0.0      0.27     8e+02      16      40 .]     151     177 ..     142     177 .. 0.71
   4 ?    4.0   0.0     0.026        76      20      39 ..     199     218 ..     184     219 .. 0.84
   5 ?   -2.8   0.0       3.5     1e+04      20      29 ..     244     253 ..     243     264 .. 0.79
   6 ?   -3.7   0.0         6   1.8e+04      31      38 ..     298     305 ..     296     306 .. 0.83
   7 ?   -1.3   0.0       1.2   3.6e+03      18      27 ..     326     335 ..     313     337 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0076
       PQQ_3 17 pavd..gglvyvgtg.......dGtlyAlDaet 40
                +a++  g+ +yv++         G +y lD++t
  CTQ26919.1 54 MALSpqGDALYVASAegfknvqGGAVYTLDPHT 86
                466555899*********************987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0021
       PQQ_3  19 vdgglvyvgtg.dGtlyAlDaet 40 
                 + g ++yv+ + dG++ A+D++t
  CTQ26919.1 106 AEGKTLYVSNSlDGGISAIDTAT 128
                 56899***************998 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.27
       PQQ_3  16 spavdgglvyvgtg..dGtlyAlDaet 40 
                 ++++ ++++yvg+      +  +Da+t
  CTQ26919.1 151 QLLLLNNTLYVGAVadPAQIWVVDATT 177
                 556668899999877777777777766 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.026
       PQQ_3  20 dgglvyvgtgdGtlyAlDae 39 
                   g+vy++ g G +  ++++
  CTQ26919.1 199 QTGRVYAANGSGEILVINPR 218
                 5799***********99998 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 3.5
       PQQ_3  20 dgglvyvgtg 29 
                 d g+++v++ 
  CTQ26919.1 244 DTGRLFVTDN 253
                 6799999875 PP

  == domain 6  score: -3.7 bits;  conditional E-value: 6
       PQQ_3  31 GtlyAlDa 38 
                 G++ +lDa
  CTQ26919.1 298 GKVISLDA 305
                 89999998 PP

  == domain 7  score: -1.3 bits;  conditional E-value: 1.2
       PQQ_3  18 avdgglvyvg 27 
                  +dg +++v+
  CTQ26919.1 326 SADGQTLFVT 335
                 7799999996 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   1.9e-05     0.058       2      23 ..     110     132 ..     109     132 .. 0.91
   2 ?    0.7   0.1       0.2   5.8e+02       2      19 ..     158     177 ..     157     189 .. 0.74
   3 ?   -0.3   0.0       0.4   1.2e+03      10      22 ..     201     212 ..     195     216 .. 0.67
   4 ?    1.0   0.0      0.15   4.6e+02       5      29 ..     250     276 ..     245     280 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.9e-05
                 EEEEE.ETTSEEEEEETTTCCEE CS
         PQQ   2 vvylg.sadGylyAlDadTGkvl 23 
                 ++y+  s dG + A+D +TGkv+
  CTQ26919.1 110 TLYVSnSLDGGISAIDTATGKVK 132
                 578888***************97 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.2
                 EEEEE..ETTSEEEEEETTT CS
         PQQ   2 vvylg..sadGylyAlDadT 19 
                 ++y+g   ++ +++ +Da+T
  CTQ26919.1 158 TLYVGavADPAQIWVVDATT 177
                 67777778888999***999 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.4
                 SEEEEEETTTCCE CS
         PQQ  10 GylyAlDadTGkv 22 
                 G++yA +  +G++
  CTQ26919.1 201 GRVYAAN-GSGEI 212
                 7777776.55554 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.15
                 EE..ETTSEEEEEETTTCCEEEEEESS CS
         PQQ   5 lg..sadGylyAlDadTGkvlWrfktg 29 
                 ++  s+  + + lD+ +Gk+l + ++g
  CTQ26919.1 250 VTdnSKAKTTLVLDIHSGKLLKQLDVG 276
                 555567778899********9987766 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00023       0.7      43     122 ..      55     132 ..      52     151 .. 0.51
   2 ?   -1.3   0.0      0.34     1e+03      81     104 ..     184     207 ..     158     233 .. 0.53
   3 ?    1.1   0.0     0.064   1.9e+02     258     307 ..     290     334 ..     263     344 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00023
                 EE-TTSSEEEEEET.S..TTTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE-TTSSEEEEEETTTTEEEEEEB.TTSEBE CS
   Lactonase  43 alspdgktlYavnetg..eeggvsafaidkdsgeltllnkvssegaspchlsvdedgkllavAnYsggsvsvfpldadgslk 122
                 alsp+g++lY+++ +g  +  g + +++d++  +l+ ++ +   + ++  l+++ +gk l+v+n   g +s ++ +  g++k
  CTQ26919.1  55 ALSPQGDALYVASAEGfkNVQGGAVYTLDPH--TLNTIGLTH-TDLKNFALQLSAEGKTLYVSNSLDGGISAIDTAT-GKVK 132
                 4555555555555555553333444555543..355555444.3334444555555555555555555555555433.4333 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.34
                 EE.SSS-EEEEEE-TTSSEEEEEE CS
   Lactonase  81 vssegaspchlsvdedgkllavAn 104
                  ++ g++++ l ++ +   +++An
  CTQ26919.1 184 IKNTGKWMTGLHYSAQTGRVYAAN 207
                 233333333333333333333333 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.064
                 EEEEETSSTEEEEEEE-TTT--EEEEEEEE-SSS.--EEEE-TTSSEEEE CS
   Lactonase 258 lyvSnRgadsiavfavdeadgtltlveevstegkfPRdfaldpsgklllv 307
                 +y+S+R + +++ ++ ++   tl++     +  ++P ++ l+ +g+ l+v
  CTQ26919.1 290 IYISQRESGKVISLDASRY--TLKKSW---ALPANPNSLLLSADGQTLFV 334
                 5555555555555444222..222222...22224555555555555544 PP

>> Ribosomal_L14  Ribosomal protein L14p/L23e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.4e-05      0.16       6      49 ..     246     289 ..     243     312 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.4e-05
                    -EEE--SSSSBSEEEEEEETT-.---EE-SSSEEEEEESSS-T. CS
  Ribosomal_L14   6 trlkvaDNsgakevecikvlggkkrkaasvGdiivvsvkkakpk 49 
                     rl v DNs ak+  ++ +  gk  k+  vGd   v  +k++++
     CTQ26919.1 246 GRLFVTDNSKAKTTLVLDIHSGKLLKQLDVGDSLAVQFNKKRHE 289
                    5789*******************99*********9999887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2709.99
//
Query:       CTQ26920.1  [L=732]
Description: Ferrichrome receptor FcuA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-32  113.1  34.9    3.9e-32  112.7  32.0    2.2  2  TonB_dep_Rec  TonB dependent receptor
    6.3e-13   49.2   2.2    9.6e-13   48.6   1.0    1.9  2  Plug          TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.35   3.1e+03     291     327 ..     106     138 ..      98     148 .. 0.69
   2 !  112.7  32.0   4.4e-36   3.9e-32      13     469 ..     251     730 ..     199     731 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.35
                   EEEEEEEESSSSCSTTTCSEEEEEEEEE.EEEEEEEEE CS
  TonB_dep_Rec 291 iknfittdpdgpslgglgdfqyqNvgka.rikGvElel 327
                   i +++++d+ ++       + y N +++ ri+G+ l++
    CTQ26920.1 106 IADVVSNDAGVQAV-----QGYGNFAETyRIRGFKLDG 138
                   44445555555444.....8888999999999998844 PP

  == domain 2  score: 112.7 bits;  conditional E-value: 4.4e-36
                   EEEEEEEEEEEEETTTTEEEEEEE.....................EEEEEEEEEECCC..EECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEE CS
  TonB_dep_Rec  13 nllanngdylrytdggdlgsalsr.....................gylgtnplyygdn..ysetdnkrlrlgydydlddnlswklslraglnYsstd 86 
                     l  +++++r++ + d+g++  +                     +    n   y++   ys+ ++   ++ ++ydl+d+  w+ +  +g+ +s+  
    CTQ26920.1 251 ASLGLDYRGDRFRSSLDFGYQKKTfhggtmgvnisgvdfvpalpdN----NK-NYSQKwgYSDIESEFGMAKAEYDLTDS--WTVYSALGGQHSHEI 340
                   4555666677777777777666668888888888888888643322....22.333333466777777788888888888..933444466666555 PP

                   EEEEEEEEEEEE.......................EEEEEEEECEEEEEEEEEEEEEEEEEEEEE...EEEEEEEEEEE.EEEEECCBEESCCTC.. CS
  TonB_dep_Rec  87 gdsdynnsglgg.......................grsynrdndyyglgnvlaaeldlngdlwfG...snladgldyrk.lsddgydaydplnps.. 154
                   g+++ +  ++ +                       ++++n++                ++++ +G   +  +d++ +r   ++++++ yd+ + +  
    CTQ26920.1 341 GTYSAPKLLNKNgdatvgrldtnriidaisgiggvRGDFNTGAI--------------SHKVNLGyaaQVHTDATAWRMsARNPTTNIYDNHDVAmp 423
                   55555555444434444433332333333222222222222222..............333224444433333444553222222222222222233 PP

                   ...........CSEEEEEEEEEEEEEEEEEEEE.ETTEEEEEEEEEEEETTCSSSS.......EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE CS
  TonB_dep_Rec 155 ...........gdasdsvdrdsyglyaqdnikl.tdrltltlGlRydhysvfgkdlrag....afsrsgsafsPsvglryrptddlslrasysrgfr 235
                              +  +++++++ +   + d++ + +d++ +t+++R++ + v + ++ +g    ++++++s + P +gl+y+p ++lsl+a+ +++ +
    CTQ26920.1 424 dnayfggnyhdPLVTSRSRTQGW--LLSDTLGFfNDKVLFTAAARHQKVVVRNYSNATGledtSSRYTQSRWMPTFGLVYKPWEQLSLYANHTEALQ 518
                   34445556766777777788888..********999*********999999988888889988777788**************************** PP

                   -S.TTCTTCEEEECCCCCEEEECSTT---EEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEESSSSCSTTTCSEEEEEE.EEEEEEEEEEEEEEE CS
  TonB_dep_Rec 236 aP.slgelyaggsngaggalsngnpdLkPEtsknyelGlkldddrlnltlayFridiknfittdpdgpslgglgdfqyqNv.gkarikGvElelsyr 330
                    P s+++++a      ++a+++    +    sk+ e+G+k d + + ++la+F i+  n i+ ++ + +             g++r++GvE+++   
    CTQ26920.1 519 -PgSVAPTTA------ANAGQSTG--I--AHSKQDEVGVKIDYGTIGGSLALFEIKKPNAISDTAGNYG-----------LdGEQRNRGVEMNV--- 590
                   .548888888......55555544..4..69*********9999999*****************99533...........46**********88... PP

                   EETTEE.....EEEEEEEEEEEEECEC..EEECTTTTSSTTEESEEEEEEEEE.ECSEEEEEEEESEEEEEEECCSSEEEEECECCEEEE--EEEEE CS
  TonB_dep_Rec 331 ltpgWg.....lglsgggytYydagdd..sdaddggnplpnvPkhtanlgltY.kfpaggWgaglllagarYvavggrrygdaantfrrvpgYtlld 419
                       +g     l+l+++   ++da+++  + ++++g++  +v  ++a+lg+ Y  +p +g++a++   ++++   +g+ y+daant  ++++Yt+ld
    CTQ26920.1 591 ----FGepmlgLRLNAS-TVWLDAKQTktAKGATDGKDAIGVANFYAVLGAEYdIKPVEGLTATA---RVNH---SGSQYADAANTK-KLDSYTTLD 675
                   ....7777733555555.559999666778999999999999***********544999999666...7788...5559*******9.********* PP

                   EEEEEEES.....SSEEEEEEEESTTE.TCSCEEESTTTTTCCEB--SEEEEEEEE CS
  TonB_dep_Rec 420 lslgYklp.....knltlslgvnNLfd.kryyassgyyglggypgpgRtfrlglry 469
                   l l+Y+       + +t ++gv+N+++ k++   +++  ++ + g +Rt+r++++y
    CTQ26920.1 676 LGLRYRMRlnadqNEMTWRVGVTNVTNeKYWSGIDDTG-TYLFEGDPRTVRVSMSY 730
                   *****77666777666***********44556666666.999************99 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   1.0   1.1e-16   9.6e-13       2     107 ..      83     180 ..      82     181 .. 0.93
   2 ?   -3.1   0.0       1.3   1.2e+04      23      43 ..     363     382 ..     357     433 .. 0.70

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 1.1e-16
                 HGCCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHCTT CS
        Plug   2 kkdtpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpianggsgagdlssidpedierievlkGpasaly 100
                  +d+p +v   t++ i++q+a+++ad++++ +gv++ ++g g+ a+++ iRG++ +   +++ G+       g ++ +++d++++er+e+ kG++s l 
  CTQ26920.1  83 AMDVPFNVIGYTSKLIQDQQAKTIADVVSNDAGVQA-VQGYGNFAETYRIRGFKLDGDDMTMGGLA------GVVPRQVMDTQMLERVEIFKGANSLLN 174
                 5788999999*************************8.*****************999999999996......9************************** PP

                 SSTGSSE CS
        Plug 101 GsdaigG 107
                 G+ ++ G
  CTQ26920.1 175 GAASS-G 180
                 *6554.4 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
                 SSHHHHHTTSTTEEEECCCCS CS
        Plug  23 tsladalqgvpgvnvsssggg 43 
                 +++ da++g+ gv+    ++g
  CTQ26920.1 363 NRIIDAISGIGGVRG-DFNTG 382
                 567788888888874.33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 4889.14
//
Query:       CTQ26921.1  [L=458]
Description: phenylalanine transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.3e-117  392.5  41.5   2.7e-117  392.3  41.5    1.0  1  AA_permease    Amino acid permease
    1.1e-45  156.3  43.7    1.4e-45  155.9  43.7    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.3  41.5    3e-121  2.7e-117       1     468 [.      26     453 ..      26     457 .. 0.97

  Alignments for each domain:
  == domain 1  score: 392.3 bits;  conditional E-value: 3e-121
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ialgg+iGtglf+g+g +++ aGp ++ll+y++ag+v fl+m++lge+++  p+sg+f+++a +++gp +Gf  G+ny++++++v ++eltaa+
   CTQ26921.1  26 HIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYAVAGIVAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAG 122
                  99**************************.99******************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeeg 196
                  i++q+w  ++d+p +wv++a f++++ ++nlv+v++ygeaef++alik++aii++i +g ++l+gg++  +agf +l+++g+    +l  g       
   CTQ26921.1 123 IYMQYW--LPDVP-TWVWAAAFFIIINAVNLVNVRLYGEAEFWFALIKVLAIIGMIAFGLWMLFGGHGGSKAGFDNLWKHGG----FLATG------- 206
                  ******..*****.********************************************************************....99999....... PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplina 294
                    ++ i  +++++f+f G el++i+a+E+++PeksiPka++qvv+ri++fY++sl+++ +l p+   ++ +      spfv ++++++++++a+ +n+
   CTQ26921.1 207 -WHGLILSLAVIMFSFGGLELIGITAAEAQNPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEIKSDS------SPFVMIFHNLDSNLVASALNF 297
                  .9****************************************************************99999......9******************** PP

  AA_permease 295 viltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRk 392
                  vil+a ls++ns++ys sR+l+ l+ +g aPk+l++vskrgvP++++lls ii  l+++l++l +   ++   l+a++ +  l++w++i++++l+fR 
   CTQ26921.1 298 VILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLARVSKRGVPVNSLLLSGIITSLVVVLNYLLPH--EALGLLMALVVATLLLNWIMICMAHLKFRA 393
                  ******************************************************************..****************************** PP

  AA_permease 393 alkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvkl 468
                  a   q+r+ +e++fka l+p   ++++a+l +il ++  ++ ++             ++a+l  +++l ++++ kl
   CTQ26921.1 394 A---QRRKGRESKFKALLAPASNYFCIAFLGLILALMCTIDGMR-------------LSAILLPVWILFLFIAFKL 453
                  *...666666*************************999999998.............7788887777777777765 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.9  43.7   1.6e-49   1.4e-45       8     403 ..      29     428 ..      25     452 .. 0.86

  Alignments for each domain:
  == domain 1  score: 155.9 bits;  conditional E-value: 1.6e-49
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    ++++g +ig+g f     ++  +gpa++l + +a ++ +l+++  + E+    p sg   +++++ +g++++fls+w +w+ +v+v ++ l++a+ 
     CTQ26921.1  29 LIALGGAIGTGLFLGIgpAIQMAGPAVLLGYAVAGIVAFLIMR-QLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGI 123
                    578999*****99987878999******999999999977777.556664449******************************************* PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.....stetdtffpngwpgvll 192
                    y++++l pd+ ++     + a+a++i++ ++n+++++ ++ + ++ +++k+ l +i +i++gl+++ gg+  s+      ++++ f+++gw g +l
     CTQ26921.1 124 YMQYWL-PDVPTW-----VWAAAFFIIINAVNLVNVRLYGEAEFWFALIKV-LAIIGMIAFGLWMLFGGHGGSKagfdnLWKHGGFLATGWHGLIL 212
                    ****88.898554.....558889***************************.6999999999999977544333466553333349999******* PP

  AA_permease_2 193 gllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilialsllg 286
                    +l+++++sf+G e +   + e+++  k +pka + ++  +l++y++  +++l+  p+ ei++ +++  ++   f+++ +  va++++++i +++l 
     CTQ26921.1 213 SLAVIMFSFGGLELIGITAAEAQNpeKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEIKS-DSS--PFVMIFHNLDSNLVASALNFVILVASLS 305
                    *********************7777699********************************97.443..6999************************ PP

  AA_permease_2 287 aintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphlkr. 381
                      n+ v+++sr+l+ l+ +g  P+f+a+v+k+g p++++ l+ i+++++++l +l + +a+ +l+++ +  l++ ++++  + l+ r  +++++r 
     CTQ26921.1 306 VYNSGVYSNSRMLFGLSVQGNAPKFLARVSKRGVPVNSLLLSGIITSLVVVLNYLLPHEALGLLMALVVATLLLNWIMICMAHLKFRAAQRRKGRe 401
                    **************************************************************9999999999999999999999999999999777 PP

  AA_permease_2 382 ..pgk...ilvaiigalfllfllvalf 403
                      +++   +  + + + fl ++l++++
     CTQ26921.1 402 skFKAllaPASNYFCIAFLGLILALMC 428
                    654444443445555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3044.58
//
Query:       CTQ26922.1  [L=413]
Description: putative nucleoside H+ symporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-97  324.9  33.9    9.1e-97  324.6  33.9    1.0  1  Nuc_H_symport  Nucleoside H+ symporter
    3.7e-30  105.1  31.6    7.4e-30  104.1  31.6    1.4  1  MFS_1_like     MFS_1 like family
    2.1e-13   49.9  79.5    1.4e-08   34.1  47.6    2.8  2  MFS_1          Major Facilitator Superfamily
      2e-06   26.9  29.1      3e-06   26.3  29.1    1.2  1  LacY_symp      LacY proton/sugar symporter


Domain annotation for each model (and alignments):
>> Nuc_H_symport  Nucleoside H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.6  33.9    2e-100   9.1e-97       6     399 ..      21     409 ..      18     410 .. 0.93

  Alignments for each domain:
  == domain 1  score: 324.6 bits;  conditional E-value: 2e-100
  Nuc_H_symport   6 rLkvlsflqyfiWGaWlvklfsylsktlfaaaeiglvysslgiaailspilvgiiaDkflsaervlavlhligavvlfla..aqvtefealfl.vl 98 
                    rL++++f+q+fiWG+W v+l++ ++    +   ig ++s+  ia+ilsp+++g++ D+f+ +++v+av+hl+ga +l++   a v++  al + +l
     CTQ26922.1  21 RLSLMMFMQFFIWGSWSVTLGLVMTRYEVS-LLIGDAFSAGPIASILSPFVLGMLVDRFFASQKVMAVMHLAGAAILWFVpqALVAQNGALLIgLL 115
                    8********************999887764.679*******************************************9972244555555554166 PP

  Nuc_H_symport  99 LvyslaymPtlaltnsiafanlrDvvtdfprirvlGtvGfilaslaflllvvsladlelsrlqlliaagvslllavyaltLPkiPakkkak.qslk 193
                    + y+l ymPtlaltn iaf  l++v + fp +rv+Gt+G+i+a        ++ ++++ ++ ++ +aa  s+ la+y+ltLP++Pa+ k+   +++
     CTQ26922.1 116 FGYTLCYMPTLALTNNIAFHSLANVDKTFPVVRVFGTIGWIIA-----GICIGVTGISDTTGIFTLAALCSVALALYSLTLPHTPAPAKGMpVQFR 206
                    679****************************************.....5678999******************************77776527999 PP

  Nuc_H_symport 194 kllgldafvLlknkrllvfflvslllavvlqiyyvfanafLtevakivvklasillslsqvaeilfiLtlpfflkrfGikkvlllslvaaalrfal 289
                     ll  daf+Llk +++l+f l++ l++v+l  yy ++ ++L + +   vk  s  +s +q++ei+f+L++p + +r+G+k +ll+++ a+ +r+a+
     CTQ26922.1 207 DLLCADAFALLKTRHFLIFSLCATLISVPLGTYYAYTASYLADAG---VKDVSTAMSFGQMSEIVFMLVIPLLFRRLGVKYMLLIGMAAWFVRYAF 299
                    *********************************************...9*********************************************** PP

  Nuc_H_symport 290 faygaddepvgvvlllLslivyGvaydffyitayvfvdkevpkdirasaqGlflllvnGvGallgsilsgalvemftvdg..vvdwqtlwlvfaam 383
                    fa g   +  g  ll L+++++Gv+ydff++ ++++ d+++ ++++  aq ++++++ G+G llgs +sgal + +   +   + w t+w ++a+ 
     CTQ26922.1 300 FALG--VSEEGRFLLYLGILLHGVCYDFFFVVGFIYTDRVAGEKVKGQAQSMIVMFTYGIGMLLGSQISGALYNHLVAGQsvPQAWVTFWWIPAVA 393
                    ****..556688999*******************************************************999998776623468*********** PP

  Nuc_H_symport 384 alvlavlfllffkekd 399
                    a+v+a++fl+ f++++
     CTQ26922.1 394 AAVIALIFLFSFQYNE 409
                    *************986 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1  31.6   1.6e-33   7.4e-30       4     376 ..      22     372 ..      19     378 .. 0.81

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 1.6e-33
  MFS_1_like   4 lkilyFfffaalgsllPYltiylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvv.ilslllsavlflsllfippskerqeesklevsv 101
                 l+++ F++f + gs    l++ ++  +++   ig   ++ p+ silsp ++g+l+Drf + +kv+ ++ l  +a+l++    +p               
  CTQ26922.1  22 LSLMMFMQFFIWGSWSVTLGLVMTRYEVSL-LIGDAFSAGPIASILSPFVLGMLVDRFFASQKVMaVMHLAGAAILWF----VP--------------- 100
                 677778888888888888888888888875.68999999******************977777651566666666655....66............... PP

  MFS_1_like 102 aqdvdaektfwilfllvvlasfflaailvlldaatlkelgedrkdyGrqrlfGsvGyaifafitGil..idhysvnllpysallyvlaallvisllvvl 198
                   +    ++ ++l+ l++ +++   ++l+l++ ++++ l +  k +  +r+fG++G++i+ + +G+    d++ +    +  ++++  al + sl++  
  CTQ26922.1 101 --QALVAQNGALLIGLLFGYTLCYMPTLALTNNIAFHSLANVDKTFPVVRVFGTIGWIIAGICIGVTgiSDTTGI--FTL--AALCSVALALYSLTL-- 191
                 ..222578889999*********************************************9999998520233333..222..333334444444444.. PP

  MFS_1_like 199 ilnetekesklkvtksl....qvllnilknpeviifllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvkll 293
                   ++t +  k   ++++     + +++lk ++ +if l a+++ +  g ++++   YL + g     +++++ +g ++ei++ ++   l+++lG+  +l
  CTQ26922.1 192 --PHTPAPAKGMPVQFRdllcADAFALLKTRHFLIFSLCATLISVPLGTYYAYTASYLADAGVK--DVSTAMSFGQMSEIVFMLVIPLLFRRLGVKYML 286
                 ..4444444444444444556889**********************************666655..57999**************************** PP

  MFS_1_like 294 iiallayilrfllyaii..enawlvlpie.vLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdl 376
                 +i++ a ++r+   a+   e+  ++l +  +Lhg+++  +++++  y  ++a+++++++ q++++++++g+G  lGs i+G+l+++
  CTQ26922.1 287 LIGMAAWFVRYAFFALGvsEEGRFLLYLGiLLHGVCYDFFFVVGFIYTDRVAGEKVKGQAQSMIVMFTYGIGMLLGSQISGALYNH 372
                 **********9888887777777777766268****************************************************87 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1  47.6     3e-12   1.4e-08       2     352 ..      23     362 ..      22     363 .. 0.78
   2 !   29.6  23.8   7.1e-11   3.2e-07      30     177 ..     251     410 ..     222     413 .] 0.77

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 3e-12
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllll...fasslw.lllvlrvlq 95 
                 +l+ f+ ++ ++  +++l  ++++ + +s   ig ++++  ++++++ ++lG l+dr f + +v+ ++ l+ a+  l+++   ++++   ll+   +l 
  CTQ26922.1  23 SLMMFMQFFIWGSWSVTLG-LVMTRYEVS-LLIGDAFSAGPIASILSPFVLGMLVDRfFASQKVMAVMHLAGAAI-LWFVpqaLVAQNGaLLIG--LLF 116
                 5778888888888888888.666777744.44888**********************667888777777777777.444435434666644444..455 PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpa 194
                 G + + + +++++   +  +  +  + + ++ ++  +G i++ +  g+       +++f ++a+ s+ +++  l l  +++p+++ + + ++       
  CTQ26922.1 117 GYTLCYMPTLALTNNIAFHSLANVDKTFPVVRVFGTIGWIIAGICIGVTG-ISDTTGIFTLAALCSVALALYSLTLPHTPAPAKGMPVQFRD------L 208
                 666555666666655555566789999999*****************999.77899*******99999987544555555555555555555......6 PP

       MFS_1 195 plvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglal 293
                  +++a+ +l+++ +l i+ +++ l+++ + ++++++ +y   + g +  ++++  ++++++  ++++l++  l +rlg + +ll+++++ ++ ++++al
  CTQ26922.1 209 LCADAFALLKTRHFL-IFSLCATLISVPLGTYYAYTASY-LADAGVK-DVSTA--MSFGQMSEIVFMLVIPLLFRRLGVKYMLLIGMAAWFVRYAFFAL 302
                 666677777777744.23333333343444488888888.8888888.48888..************************99999999999999999999 PP

       MFS_1 294 lavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfn.tagslggalg 352
                     +  +ll+l+++l G+++ f+f+  + +++++a+++  g+a++ +  +++++g++lg
  CTQ26922.1 303 GVSEEGRFLLYLGILLHGVCYDFFFVVGFIYTDRVAGEKVKGQAQSMIVmFTYGIGMLLG 362
                 999999999999**********************************99989999***998 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 7.1e-11
       MFS_1  30 spseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa...sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraig 124
                  +  +++++++     +v++l++  l  r+G + +ll+g++++++  ++++l +    + +ll+++ +l G+++ ++f +g +++ +++ ++ +g+a +
  CTQ26922.1 251 GVKDVSTAMSFGQMSEIVFMLVIPLLFRRLGVKYMLLIGMAAWFVRyAFFAL-GvseEGRFLLYLGILLHGVCYDFFFVVGFIYTDRVAGEKVKGQAQS 348
                 2333555555556666******************************333333.345888899************************************9 PP

       MFS_1 125 llsa.gfslGailgpllggllasslg........Wravfyilaivsllafvlfllllpeepp 177
                 ++ + ++++G++lg  ++g+l+ +l         W   ++i a+++++ +++fl+ +  +++
  CTQ26922.1 349 MIVMfTYGIGMLLGSQISGALYNHLVagqsvpqaWVTFWWIPAVAAAVIALIFLFSFQYNEK 410
                 9888578***************777789********99***********9987777655544 PP

>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3  29.1   6.7e-10     3e-06      12     376 ..      22     373 ..      12     410 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 6.7e-10
   LacY_symp  12 falffffyffimsayfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllvlfapfliyvfepllqlnilvGalvG 110
                 ++l+ f+ ffi++ +   + + ++ + ++    +G  fs+  + sil   ++G++ d++   +++   ++++ +  a  l +v + l+  n   Gal+ 
  CTQ26922.1  22 LSLMMFMQFFIWGSWSVTLGLVMTRY-EV-SLLIGDAFSAGPIASILSPFVLGMLVDRFFASQKV---MAVMHLAGAAILWFVPQALVAQN---GALLI 112
                 56788999*****9988777666543.23.3357889*********************9988875...56677788999999999999888...77776 PP

   LacY_symp 111 gvflG..lvysagagaieayiekvsraskfeyGkarvfGclGyalcaslaGilfsidpslvfwlasgfalilllllllskpdksssakvadalGankea 207
                 g+ +G  l y    ++ +    +   + +  +  +rvfG++G+ ++    G+    d +  f la+++++ l+l  l+      ++   a+ + ++ ++
  CTQ26922.1 113 GLLFGytLCYMPTLALTNNIAFHSLANVDKTFPVVRVFGTIGWIIAGICIGVTGISDTTGIFTLAALCSVALALYSLTLP----HTPAPAKGMPVQFRD 207
                 77766335677777777777777777888999*************9999999998899999*********9998776554....555555667788888 PP

   LacY_symp 208 fslrlalelfkdrklwvfvlyvvGvasvydvfdqqfavffkslfespeaGtrvfGyvttagellnalimfiaplivnriGaknalliagvimsvrilgs 306
                 +    a++l+k+r++ +f+l          v    +  + +s++   +aG++    + ++g++ + + m+++pl+  r+G k  lli+ +   vr    
  CTQ26922.1 208 LLCADAFALLKTRHFLIFSLCATL----ISVPLGTYYAYTASYL--ADAGVKDVSTAMSFGQMSEIVFMLVIPLLFRRLGVKYMLLIGMAAWFVRYAFF 300
                 98999*********9999996544....4444455555666665..589**********************************************9988 PP

   LacY_symp 307 afattale...vvilkllhalevplllvgvfkyitsafdkrlsatifligfqlskqlaivllstlaGklydkv 376
                 a+ ++      + +  llh +   +  v  f y+  +  +++      +   ++  ++++l s ++G ly+++
  CTQ26922.1 301 ALGVSEEGrflLYLGILLHGVCYDFFFVVGFIYTDRVAGEKVKGQAQSMIVMFTYGIGMLLGSQISGALYNHL 373
                 887776541104445689***************99999999988888888888899**************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3046.54
//
Query:       CTQ26923.1  [L=340]
Description: Inosose dehydratase IolE [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-36  125.6   0.4    2.2e-36  125.3   0.4    1.1  1  AP_endonuc_2    Xylose isomerase-like TIM barrel
      4e-20   71.3   0.2    7.6e-20   70.4   0.2    1.5  1  AP_endonuc_2_N  AP endonuclease family 2 C terminus


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.3   0.4   2.5e-40   2.2e-36       2     210 .]      29     279 ..      28     279 .. 0.96

  Alignments for each domain:
  == domain 1  score: 125.3 bits;  conditional E-value: 2.5e-40
                   HHHHHCT-SEEEEECCTCSHHHHC....HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHC...............HTTCS..HHHHHHHHHHHHH CS
  AP_endonuc_2   2 aaaaeaGfdgvElfgrdlvpvsel....sdeelrelrkaldelglriaslslftrfgypded...............erear..reesvdalkraie 77 
                   ++aa +G+++ ++ +  +  ++      s+++++e+  +l+e+gl i+ ls++   + + ++               ++++   ++++v+++++a+ 
    CTQ26923.1  29 QWAAGLGYKALQIPCNHPAIFDVEraaaSQTYCDEVSGILAEHGLVISELSTHLEGQLVAVHpaydaafdafapaalHGDPQarQRWAVEKVRQAAV 125
                   689***********9999887766799************************************************99888889899*********** PP

                   HHHHHTBSEEEEEBCC........GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTT.EEEEEEHHHH CS
  AP_endonuc_2  78 laaaLGapllvlhpGt........agagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgdeelarlldavdspn.vgvclDtgHl 165
                   ++ +LG     +++G         ++ ++    +ea++ la++++ l+d ++++gv +++E ++g++ ++g  +++r+l  vd++  + + +D++Hl
    CTQ26923.1 126 ASGRLGLQAHATFSGAlawpffypWPPHNQPLLDEAFAELARRWRPLLDLFDEQGVDVCYEIHPGEDLHDG-VTFERFLALVDNHPrCNMLYDPSHL 221
                   *********************9999999999999*************************************.999999999998888********** PP

                   HHHTTTHHHHHHHHHGGEEEEEE.EESS.............TTTTSSTTEESTTSSSS CS
  AP_endonuc_2 166 liaeedvddalraladrikhvHikDakg.............dlgagrdrhvpigeGei 210
                   +++++d+ + ++ +  rik++H+kDa+              ++  + +r++++g+G+i
    CTQ26923.1 222 HLQQMDYLAYIDIYHARIKAFHVKDAEFrrngrngvyggyqPWQQRAGRFRSPGDGQI 279
                   ********************************************************87 PP

>> AP_endonuc_2_N  AP endonuclease family 2 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.2   8.5e-24   7.6e-20       1      56 []     280     334 ..     280     334 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 8.5e-24
  AP_endonuc_2_N   1 dwkdifsaLrqiGYdgplSiEwEDslmsreeGareAvaflkdkllieeseaafdwa 56 
                     d+k +fs+L+++++ g++++EwE++l+++e Gare+ +f+++++ i+++ +afd++
      CTQ26923.1 280 DFKGVFSKLTEYDFAGWAVLEWECCLKDSETGAREGSEFIRRHI-IPVAGRAFDDF 334
                     7****************************************977.*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2507.08
//
Query:       CTQ26924.1  [L=383]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-28   98.2   0.6    9.1e-28   97.5   0.6    1.3  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
    1.2e-09   38.9   0.7    2.8e-09   37.7   0.7    1.6  1  NAD_binding_3    Homoserine dehydrogenase, NAD binding domain
    6.4e-07   29.4   0.0    1.4e-06   28.3   0.0    1.6  1  GFO_IDH_MocA_C   Oxidoreductase family, C-terminal alpha/beta
    2.8e-06   27.6   0.3    5.2e-06   26.7   0.3    1.5  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    0.00064   20.2   0.1     0.0015   19.0   0.1    1.7  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
  ------ inclusion threshold ------
      0.037   14.6   0.1       0.09   13.4   0.1    1.7  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.053   13.8   0.0       0.37   11.1   0.0    2.3  3  DUF2442          Protein of unknown function (DUF2442)
      0.055   12.4   0.1      0.089   11.7   0.1    1.3  1  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.6   4.1e-31   9.1e-28       2     118 ..       3     119 ..       2     121 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 4.1e-31
                   EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE.EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-S CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve.aysdleelladpeidavivatpngtheelakaaleagkhvllEKPlat 97 
                   +vaiiGaG+ig+ hl++l++   + evval+d++ e+a++ a++++++ ay+++e+lla+p  ++v  +tpn++h+++ +++l+ag hv+ EKPl++
    CTQ26924.1   3 QVAIIGAGFIGPAHLEALRRL-GDVEVVALCDSRLEAAQRKAQALNIAhAYDSVEALLAHPGLQVVHNCTPNHLHAQINRQILAAGLHVFSEKPLCM 98 
                   79*************999999.999**********************99************************************************ PP

                   SHHHHHHHHHHHHHHTS-EEE CS
  GFO_IDH_MocA  98 tveeakelvelaekkgklvsv 118
                   t eea+elv+la+++g++ +v
    CTQ26924.1  99 TAEEARELVALAARAGVVHGV 119
                   ****************98776 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.7   1.2e-12   2.8e-09       1     112 [.       8     115 ..       8     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.2e-12
                    --SHHHHHHHHHHHH---SSEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGGG- CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqseielelvavadrdsllskdrkallasealtldlddliahldpdvvVEcasseavaelvlkaLkagkdvvtankgalad 96 
                    G+G iG a le+l+r  +   +e+va++d++ ++++++++ l+ +  ++++++l+ah+  +vv  c++    a++  ++L+ag +v       ++ 
     CTQ26924.1   8 GAGFIGPAHLEALRRLGD---VEVVALCDSRLEAAQRKAQALNIAHAYDSVEALLAHPGLQVVHNCTPNHLHAQINRQILAAGLHVFSEKPLCMT- 99 
                    99*************995...9*********7788889999********************************************9887666666. PP

                    HHHHHHHTSSSTTS-- CS
  NAD_binding_3  97 ealyeeLreaaeanga 112
                     +  +eL+++a ++g+
     CTQ26924.1 100 AEEARELVALAARAGV 115
                    8888999999998886 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   6.1e-10   1.4e-06       2     106 ..     134     264 ..     133     272 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 6.1e-10
                     HHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSH..HCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEE......... CS
  GFO_IDH_MocA_C   2 elIengklGevvsvdvwtldtragaeakkrwkrrk..kksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaav......... 85 
                     ++I+ g++G++ + ++ +l+++   e+ ++w+ +    + + ++ d+g+H  D +q+ +G  +++v+a  +++    +a++++ a+         
      CTQ26924.1 134 AMIRHGEVGRIFAAHGSYLQDWMLLETDYNWRVDSaqGGASRTVADIGSHWCDTVQFMTGRRIVEVMADLSIVWPTRKAPVNGKATfsavheaqa 228
                     69******************************8886555556789**********************9888887777777777777776667777 PP

                     ...............EEEEEEEETTEEEEEEEECCT CS
  GFO_IDH_MocA_C  86 ...............msvlnlekgsgevitlesgvs 106
                                    +++ +++kgs+ v++ ++g  
      CTQ26924.1 229 yetrpvdtedfgsvlLRFDDGSKGSFMVSQVSAGRK 264
                     777777777777777777777777777777666665 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.3   2.3e-09   5.2e-06       1     127 [.       4     115 ..       4     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.3e-09
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS..SEEEE-SSGGGHHHHHHHHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg..dlvvnlsppissldvlkaCiet 92 
                      v iiGaG++G a +e l r +dv  e++  + s+ ++++ +         a+al+++   + ++all++   ++v n++p+++++++ +  +++
       CTQ26924.1   4 VAIIGAGFIGPAHLEALRRLGDV--EVVALCDSRLEAAQRK---------AQALNIAHAYDSVEALLAHPglQVVHNCTPNHLHAQINRQILAA 86 
                      689********************..7777777766643333.........4556655555558888887778********************** PP

                      T-EEEE...SS-BCGCCSCHCCSHHHHHTHHHHHHCTS CS
  Sacchrp_dh_NADP  93 gvhyvd...tsiskeertnyalreavlklkekakeagv 127
                      g h+      ++           e++++l + a++agv
       CTQ26924.1  87 GLHVFSekpLCM---------TAEEARELVALAARAGV 115
                      ****99877666.........67777777777777776 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   6.7e-07    0.0015       1      95 [.       3      92 ..       3     116 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.7e-07
                    EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEEEE CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeagvkviD 95
                    +vai+G  G +G + l+ L++  +ve+v+l+ s+ +a ++ a+a ++   +  ++       +  ++++v  ++p+  ++++ +++++ag++v++
      CTQ26924.1  3 QVAIIG-AGFIGPAHLEALRRLGDVEVVALCDSRLEAAQRKAQALNIAHAYDSVEA----LLAHPGLQVVHNCTPNHLHAQINRQILAAGLHVFS 92
                    69****.8***************************999888888773222222222....3355899*************************986 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1     4e-05      0.09       2      56 ..       4      55 ..       3      88 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4e-05
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHH CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdne 56
                   ++iiGaG +g a ++ l + g  + e+v  +++  e a+  a++l++     d  
     CTQ26924.1  4 VAIIGAGFIGPAHLEALRRLG--DVEVVALCDSRLEAAQRKAQALNIAHAY-DSV 55
                   8********************..8899989999999999999999854444.333 PP

>> DUF2442  Protein of unknown function (DUF2442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       5.1   1.2e+04      50      63 ..     197     209 ..     189     211 .. 0.74
   2 ?   11.1   0.0   0.00017      0.37       8      63 ..     237     282 ..     234     285 .. 0.84
   3 ?   -1.4   0.0       1.4     3e+03      15      30 ..     355     370 ..     351     378 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.1
                 -EE-TTSSSEEETT CS
     DUF2442  50 vevspgggglhWpd 63 
                 vev  +   + Wp+
  CTQ26924.1 197 VEVM-ADLSIVWPT 209
                 6676.677899997 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00017
                 TTT.EEEEEETT--EEEE-TTTS.STTTT--TTTT......TS-EE-TTSSSEEETT CS
     DUF2442   8 ddy.klyvyfddGrellvdlswllprlenatfeqlkdkelFaqvevspgggglhWpd 63 
                 +d+  + ++fddG+ +++ +s++      +    +        ve++++   l+W++
  CTQ26924.1 237 EDFgSVLLRFDDGSKGSFMVSQVS----AGRKN-R------LAVEINGSLCSLAWDQ 282
                 6666899****************6....55555.5......59************97 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.4
                 EETT--EEEE-TTTS. CS
     DUF2442  15 yfddGrellvdlswll 30 
                  fddG ++ + +++++
  CTQ26924.1 355 AFDDGADVMYIIEAIV 370
                 69****9999998887 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1     4e-05     0.089     132     220 ..       4      91 ..       2     117 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4e-05
                      EEEE--SHHHHHHHHHHCCCS--SEEEEE-SSHHHHHHHHHHCCS.CTT-EEECSCHH..HHTTSSEEEE----SS.-SB-GGGS-TT-EEE CS
  OCD_Mu_crystall 132 laiiGaGvqaetqlealkavldikevriydrdeeaaekfaenlqefefevsackseee..avegadivvtvTaaka.pilkaewvkpGahin 220
                      +aiiGaG     +leal+++ d++ v + d + eaa++ a+ l+      +a +s+e   a  g ++v  +T+++    +  + + +G h+ 
       CTQ26924.1   4 VAIIGAGFIGPAHLEALRRLGDVEVVALCDSRLEAAQRKAQALNI----AHAYDSVEAllAHPGLQVVHNCTPNHLhAQINRQILAAGLHVF 91 
                      69**************************99999999988888874....4555665552245689999999998866888899999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2849.12
//
Query:       CTQ26925.1  [L=138]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.4   1.8       0.24   11.6   1.8    1.3  1  CRA_rpt   Cytoplasmic repetitive antigen (CRA) like repeat


Domain annotation for each model (and alignments):
>> CRA_rpt  Cytoplasmic repetitive antigen (CRA) like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.8   1.3e-05      0.24       8      27 ..      79      98 ..      76     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.3e-05
     CRA_rpt  8 aEaakvAEAEKrkAAEAakv 27
                + a ++AEA K++AA  ++ 
  CTQ26925.1 79 SDARRTAEAIKQQAAQGTRT 98
                6799***********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1108.40
//
Query:       CTQ26926.1  [L=326]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-43  147.0   1.6    1.3e-42  146.0   1.6    1.5  1  Peripla_BP_3    Periplasmic binding protein-like domain
    2.5e-26   92.8   0.2    3.6e-26   92.2   0.2    1.2  1  Peripla_BP_1    Periplasmic binding proteins and sugar bindin
    2.3e-20   73.3   0.0    1.3e-19   70.8   0.0    1.9  1  Peripla_BP_4    Periplasmic binding protein domain
    2.5e-20   72.0   1.4    6.9e-20   70.6   1.4    1.8  1  LacI            Bacterial regulatory proteins, lacI family
    3.9e-05   23.5   0.2    0.00032   20.5   0.4    2.0  2  Peripla_BP_6    Periplasmic binding protein
     0.0021   18.1   0.1     0.0053   16.8   0.1    1.8  1  HTH_7           Helix-turn-helix domain of resolvase
     0.0025   17.5   0.5       0.01   15.5   0.1    2.4  2  HTH_38          Helix-turn-helix domain
     0.0094   15.6   0.0      0.024   14.3   0.0    1.8  1  Crp             Bacterial regulatory proteins, crp family
  ------ inclusion threshold ------
      0.013   15.5   0.1      0.023   14.7   0.1    1.4  1  Glyco_transf_4  Glycosyltransferase Family 4
      0.017   14.9   0.1      0.062   13.1   0.1    2.0  1  HTH_23          Homeodomain-like domain
      0.019   14.4   0.1      0.051   13.0   0.1    1.8  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.024   14.7   0.1      0.066   13.3   0.1    1.8  1  HTH_3           Helix-turn-helix
      0.034   14.3   0.2      0.047   13.9   0.2    1.2  1  MRP-L20         Mitochondrial ribosomal protein subunit L20
      0.043   14.2   0.0      0.043   14.2   0.0    3.1  3  HTH_31          Helix-turn-helix domain
       0.07   13.1   0.1        0.2   11.7   0.1    1.8  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.091   12.9   0.0       0.22   11.7   0.0    1.7  1  DUF3853         Protein of unknown function (DUF3853)
      0.096   12.8   0.2       0.33   11.1   0.2    1.9  2  Trp_repressor   Trp repressor protein
       0.31   10.0   0.8        0.5    9.3   0.2    1.6  2  TnsD            Tn7-like transposition protein D


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   1.6   1.3e-45   1.3e-42       1     166 []     166     326 .]     166     326 .] 0.90

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 1.3e-45
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC.-SEEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaa.lPtAviaasDelAlgvlqalrea 96 
                   v +L++ G rria+i+  +d   +++++rerg++++l+ +gl  +++ +a+d +aaa+  +   ll      + +P+Av+a sD+lA+g+l+a+++a
    CTQ26926.1 166 VSRLADSGRRRIALIN--HDLSYRYARLRERGYKSVLHVHGLAYQQVTYAQDLSAAAGKRAMEQLL---SQ-DeKPDAVFAVSDSLAAGALRAIAQA 256
                   579*************..88889********************99998888877655555543333...22.249********************** PP

                   T--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  97 glrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   glrvPed++vigfd++ela+++sP+lTtv+qp + +Gr+a+ ll++++++++a+ e+v +  +++ R+S+
    CTQ26926.1 257 GLRVPEDIAVIGFDGTELAEVVSPQLTTVEQPSRAIGRTAVSLLMKRIDDPDAAVERVMMDWRVIDRASV 326
                   *********************************************************99999******97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.2   3.6e-29   3.6e-26       3     263 ..      60     308 ..      58     322 .. 0.90

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 3.6e-29
                   EEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EE CS
  Peripla_BP_1   3 klglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPcv 98 
                    +++++ +  +Pf +++vkgi+++a++ g+ +ll + g++     + ++ll  k +dg+i   +  s +++t +     p + + + +d    + cv
    CTQ26926.1  60 MILVMVSNIANPFCAEVVKGIEEEAEKNGYRILLCNSGSDLARStSGLQLLSGKMVDGIITMNALSSLPELTTMIGD-APWVQCAEYADTG-SISCV 154
                   5778888889************************9988887666899***********999988889*******988.*********9999.***** PP

                   EE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-SSHHHHH CS
  Peripla_BP_1  99 ipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaivaindeaal 193
                     +d +a++ +   L   g +r ial++ + s  +a+ r  G+   l+++Gl  ++v     + +  +++ a+++ll++   P+  a+ a +d+ a+
    CTQ26926.1 155 GINDVEAAQGAVSRLADSGRRR-IALINHDLSYRYARLRERGYKSVLHVHGLAYQQVTY-AQDLSAAAGKRAMEQLLSQDekPD--AVFAVSDSLAA 247
                   **********************.*****************************5555554.45677889999********999**..*********** PP

                   HHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEE CS
  Peripla_BP_1 194 GavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinker 263
                   Ga +a+ ++G l+ +e++     +v ++dg    +   +  ++l++ + p + +Gr+a + +++ i    
    CTQ26926.1 248 GALRAIAQAG-LRVPEDI-----AVIGFDGT---ELAEVVSPQLTTVEQPSRAIGRTAVSLLMKRIDDPD 308
                   **********.*******.....******98...66778888899999999*************994333 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   1.3e-22   1.3e-19       1     252 [.      61     302 ..      61     307 .. 0.86

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 1.3e-22
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEE.E--SSH.HHHHHHHHHHHHTT-EEEEESTTGCTTT- CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgii.vapvds.talapalkkakaaGIpVvafdsddapsge 95 
                   i v+v++  npf+ ++ +g+ee a+++g+   +  ++++d a+  + ++ +  k vdgii +++ +s ++l++++ +a     p v       ++  
    CTQ26926.1  61 ILVMVSNIANPFCAEVVKGIEEEAEKNGYRILLC-NSGSDLARSTSGLQLLSGKMVDGIItMNALSSlPELTTMIGDA-----PWVQCAEY--ADTG 149
                   56899***************************97.9999************9999*****777777767777777765.....55555555..5888 PP

                   CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-T.TCEECCEEESTTTCHHHHHHHHHHHHHTT.TECEEEES CS
  Peripla_BP_4  96 rlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeyp.gikivaevaganwdaekaqqalealltan.pldgilaa 190
                    +++vg++  +a++ +   la+        +++++ +++ ++a++r+ g ++vl  ++  ++ v+  ++ + +a+ +++a+e+ll+++ + d+++a+
    CTQ26926.1 150 SISCVGINDVEAAQGAVSRLADSGRR---RIALINHDLSYRYARLRERGYKSVLHVHGlAYQQVT--YAQDLSAAAGKRAMEQLLSQDeKPDAVFAV 241
                   99*********************995...6************************99544555444..4448***************88569****** PP

                   SCCHHHCHHHHHHHTTT..TSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHH CS
  Peripla_BP_4 191 ndgmaegalealeaagl..agkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelava 252
                   +d  a gal+a+++agl    +++v+g+D+t   l+ + + +++ tv q+++++g++av l+++
    CTQ26926.1 242 SDSLAAGALRAIAQAGLrvPEDIAVIGFDGT--ELAEVVSPQLT-TVEQPSRAIGRTAVSLLMK 302
                   *****************85444557777776..57888999998.**************99987 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   1.4   6.9e-23   6.9e-20       2      46 .]       3      47 ..       2      47 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 6.9e-23
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                i+ +ArlAGVS+aTVSrvLnn+++V+++ rerV++a++e nY+Pn
  CTQ26926.1  3 IQKIARLAGVSVATVSRVLNNSDTVKAKNRERVLQAIKESNYQPN 47
                899*****************************************9 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.41   4.1e+02     126     166 ..      50      91 ..       6      93 .. 0.74
   2 !   20.5   0.4   3.3e-07   0.00032     114     229 ..     154     273 ..     108     288 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.41
                   HHHHHHHTTSCEEEEEEES.SHHHHHHHHHHHHHHHCCTEEE CS
  Peripla_BP_6 126 veylakelggkkvalvyad.yafgregiaalkaaakaaGgev 166
                   +++l++ + +  +++v++  ++f +e+++++++ a+++G+ +
    CTQ26926.1  50 ARQLRTARSNMILVMVSNIaNPFCAEVVKGIEEEAEKNGYRI 91 
                   555555555555555554349999************999875 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 3.3e-07
                   SS--HHHHHHHHHHHHHHHTTSCEEEEEEES..SHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTH..HHHHHHHHHHHTT..T-SEEEEESSHHHHH CS
  Peripla_BP_6 114 lgpsysaqasalveylakelggkkvalvyad..yafgregiaalkaaakaaGgevvgeepvplgt..tdfsaqvlqikaa..gadavllagtgadla 204
                   +g ++   a ++v  la+  g++++al+++d  y + r  ++++k ++  +G+   +++++ ++   +  + ++ q+ ++  ++dav+++++   +a
    CTQ26926.1 154 VGINDVEAAQGAVSRLAD-SGRRRIALINHDlsYRYARLRERGYKSVLHVHGLAY-QQVTYAQDLsaAAGKRAMEQLLSQdeKPDAVFAVSDSL-AA 247
                   555677889999999998.6***********999999999**************6.67777765533666778888755344******999887.99 PP

                   HHHHHHHHTT-S.SSCEEEECCC-CH CS
  Peripla_BP_6 205 allkaaaeaGld.akrillvswsgse 229
                    +l+a+a+aGl+ ++ i++++++g+e
    CTQ26926.1 248 GALRAIAQAGLRvPEDIAVIGFDGTE 273
                   9*********9966779888888765 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   5.3e-06    0.0053      22      44 ..       1      23 [.       1      24 [. 0.94

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.3e-06
                --STTTSSSS---SSSS--SS-- CS
       HTH_7 22 isiskIAkevnisRsTvYRylad 44
                +si+kIA+  ++s++Tv R+l+ 
  CTQ26926.1  1 MSIQKIARLAGVSVATVSRVLNN 23
                89*******************95 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1     1e-05      0.01      21      41 ..       1      21 [.       1      23 [. 0.95
   2 ?   -2.9   0.1         6   5.9e+03      21      35 ..      44      58 ..      31      58 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1e-05
      HTH_38 21 lslreIArrLgrspsTIsREl 41
                +s+ +IAr+ g+s  T+sR l
  CTQ26926.1  1 MSIQKIARLAGVSVATVSRVL 21
                8******************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6
      HTH_38 21 lslreIArrLgrsps 35
                +     Ar+L  ++s
  CTQ26926.1 44 YQPNLLARQLRTARS 58
                444557888877776 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.4e-05     0.024       3      23 ..       1      21 [.       1      23 [. 0.96

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-05
                --HHHHHHHHTS-HHHHHHHH CS
         Crp  3 mSRqdIAdylGlTrETVSRlL 23
                mS q IA++ G ++ TVSR+L
  CTQ26926.1  1 MSIQKIARLAGVSVATVSRVL 21
                999*****************9 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   2.3e-05     0.023      84     150 ..     184     251 ..     161     268 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.3e-05
  Glyco_transf_4  84 lgaallalrrrlgiplVltvHglyekrllkarlkplsrllralerrl...lrradrviavSeatadelre 150
                     l + +++lr  +g + Vl+vHgl++   + + + +  ++ ++ +++l     + d+v+avS+++a+  ++
      CTQ26926.1 184 LSYRYARLRE-RGYKSVLHVHGLAY-QQVTYAQDLSAAAGKRAMEQLlsqDEKPDAVFAVSDSLAAGALR 251
                     3344455565.9************6.55555666666666666666656679**********98765444 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   6.2e-05     0.062      18      39 ..       1      22 [.       1      26 [. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.2e-05
      HTH_23 18 lsvreIAreLgvsrrTvyrwlk 39
                +s+++IAr+ gvs  Tv+r+l+
  CTQ26926.1  1 MSIQKIARLAGVSVATVSRVLN 22
                589****************997 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   5.1e-05     0.051      27      49 ..       1      22 [.       1      24 [. 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.1e-05
  HTH_Tnp_ISL3 27 srsvkavArqlgvSwtTVwrild 49
                  + s++ +Ar+ gvS  TV r+l+
    CTQ26926.1  1 M-SIQKIARLAGVSVATVSRVLN 22
                  4.9******************97 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   6.6e-05     0.066      10      34 ..       1      25 [.       1      40 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.6e-05
                HHHHHHHHHHTSSHHHHHHHHTTSS CS
       HTH_3 10 lsqeeLAeklGvsrstisriEnGer 34
                +s++++A+++Gvs++t+sr  n+  
  CTQ26926.1  1 MSIQKIARLAGVSVATVSRVLNNSD 25
                7999******************954 PP

>> MRP-L20  Mitochondrial ribosomal protein subunit L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   4.7e-05     0.047     106     163 ..       2      60 ..       1      61 [. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.7e-05
     MRP-L20 106 srkkLakkFgcsklfvsmvteapk.ekkkeveaeleavkerWgekrriaredRkkRkel 163
                 s++k+a+  g+s   vs v+++++  k+k++e++l+a+ke++ +   +ar+ R  R ++
  CTQ26926.1   2 SIQKIARLAGVSVATVSRVLNNSDtVKAKNRERVLQAIKESNYQPNLLARQLRTARSNM 60 
                 789999999***********99983566677778**********************998 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.3e-05     0.043      15      53 ..       1      38 [.       1      42 [. 0.85
   2 ?   -1.5   0.3       3.4   3.3e+03       2      10 ..      49      57 ..      48      60 .. 0.77
   3 ?   -0.6   0.9       1.8   1.8e+03      44      58 ..     247     262 ..     187     265 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.3e-05
      HTH_31 15 LsqeevAerlgvsestlsrlEqGrrgrpspavlealara 53
                +s +  A+++gvs++t+sr+ +   + ++    e++++a
  CTQ26926.1  1 MSIQKIARLAGVSVATVSRVLNNSDT-VKAKNRERVLQA 38
                578999****************9995.977777777776 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.4
      HTH_31  2 LGalLralR 10
                L+++Lr++R
  CTQ26926.1 49 LARQLRTAR 57
                788888888 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.8
      HTH_31  44 pavlealara.lgldp 58 
                  ++l+a+a+a l++++
  CTQ26926.1 247 AGALRAIAQAgLRVPE 262
                 5678888887677766 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1    0.0002       0.2      22      43 ..       1      22 [.       1      24 [. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
                HHHHHHHHHTTSSHHHHHHHHH CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrils 43
                ++ + +A++ G++  tvsr+l+
  CTQ26926.1  1 MSIQKIARLAGVSVATVSRVLN 22
                56799***************98 PP

>> DUF3853  Protein of unknown function (DUF3853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00022      0.22      48      67 ..       3      22 ..       1      32 [. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00022
     DUF3853 48 ikglarllGislptanrikk 67
                i+++arl G+s++t++r+ +
  CTQ26926.1  3 IQKIARLAGVSVATVSRVLN 22
                899**************865 PP

>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00034      0.33      51      75 ..       2      26 ..       1      39 [. 0.76
   2 ?   -2.3   0.0       5.1   5.1e+03      49      79 ..     204     234 ..     198     240 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
  Trp_repressor 51 sqreIaeelgvSiAtItRvsrsLkt 75
                   s ++Ia   gvS+At++Rv ++  t
     CTQ26926.1  2 SIQKIARLAGVSVATVSRVLNNSDT 26
                   6689***************887554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.1
  Trp_repressor  49 elsqreIaeelgvSiAtItRvsrsLktgsde 79 
                    +l ++++    + S+A   R   +L +++++
     CTQ26926.1 204 GLAYQQVTYAQDLSAAAGKRAMEQLLSQDEK 234
                    6678888888888888777777777666655 PP

>> TnsD  Tn7-like transposition protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2    0.0005       0.5     200     238 ..       1      38 [.       1      70 [. 0.68
   2 ?   -2.4   0.0       1.8   1.8e+03       6      38 ..     177     209 ..     174     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0005
        TnsD 200 lslkeiAkelgvdiktVlryakklgllkekkkqkkesre 238
                 +s+++iA+ +gv++ tV r++++ +  k +k++++  + 
  CTQ26926.1   1 MSIQKIARLAGVSVATVSRVLNNSDTVK-AKNRERVLQA 38 
                 799******************9888665.4444443333 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
        TnsD   6 elLlnsnpsnlevkllrekYrerltekglatpn 38 
                 + L+n+++s +  +l ++ Y++ l+  gla  +
  CTQ26926.1 177 IALINHDLSYRYARLRERGYKSVLHVHGLAYQQ 209
                 579999999999999999999999999998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2386.18
//
Query:       CTQ26927.1  [L=414]
Description: putative membrane protein; putative channel [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-67  226.1   0.2    1.3e-65  220.8   0.2    2.3  1  MS_channel  Mechanosensitive ion channel


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.8   0.2   7.2e-70   1.3e-65       2     206 .]     142     396 ..     141     396 .. 0.99

  Alignments for each domain:
  == domain 1  score: 220.8 bits;  conditional E-value: 7.2e-70
                 .HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESS..SEEEEEEEE-SSEEEEEETTSEEEEEEH CS
  MS_channel   2 kilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveig..dieGtVediglrttkirtfdgrivtiPn 98 
                 +i+++++i++gili++ l+g+++++l+++lGa++++l+l++kd+i++lvaGi+l++++++k+GD++e++  +++G+V+digl+t+k+r++d++i+tiP+
  CTQ26927.1 142 GIKLVTAIIIGILIISLLIGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPkyGADGAVIDIGLTTVKVRNWDNTITTIPT 240
                 7999*********************************************************************************************** PP

                 HHHHTS-EEESSS...SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-T........................................... CS
  MS_channel  99 sslvtsnieNlsr..esgtrrikvsigvtyssdvkklekvleelkealkekpevlk........................................... 152
                 +slv+++++N+s+  +sg+rrik+s +++++s+ + +e+  ++l +a + kp++++                                           
  CTQ26927.1 241 WSLVSDSFKNWSGmsASGGRRIKRSLNIDTTSIHFLDEQEQQRLIRAKLLKPYMDSrheeisawnqqyageqsilnerrmtnvgtfraylqeylrhhpr 339
                 *************************************************************************************************** PP

                 ...TS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHHHHHHHT--- CS
  MS_channel 153 ...dkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikkileeegiei 206
                    d++l+v+++++++++l++e+++f++tvv++ey+ +q++i+++++++++e+g++i
  CTQ26927.1 340 irqDMTLMVRQLAPDANGLPIEIYCFTNTVVWAEYEGIQADIFDHVFAVVDEFGLRI 396
                 ******************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1044  (0.0582297); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2950.80
//
Query:       CTQ26928.1  [L=475]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-37  127.8  43.9    4.4e-37  127.8  43.9    1.6  1  MFS_1       Major Facilitator Superfamily
    3.4e-10   39.4  21.1    8.3e-08   31.5   8.5    2.2  2  Sugar_tr    Sugar (and other) transporter
  ------ inclusion threshold ------
       0.93    7.7  10.1      0.028   12.7   0.4    2.8  3  OATP        Organic Anion Transporter Polypeptide (OATP) fami


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8  43.9   7.4e-41   4.4e-37       2     353 .]      17     419 ..      16     419 .. 0.90

  Alignments for each domain:
  == domain 1  score: 127.8 bits;  conditional E-value: 7.4e-41
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 l +++l  ++ si+++al  a++++l +s++++ l+++ly++++av    ++ l+d++Grrr++++g++lf++++ll+ +a+s+ +ll++r lqG+ga+
  CTQ26928.1  17 LSGQMLPLIDTSITNVALD-AITHTLAASATQLELIVALYGVAFAVCLAMGSKLGDNYGRRRLFMWGVALFGIASLLCGMANSIGALLAARTLQGAGAA 114
                 567778889999******9.******************************************************77777856666************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.....Wravfyilaivsllafvlfllllpeepperkrkspkeee...... 188
                 +++p ++a +    +++ ++rai+l+++  ++++i+g + gg+l+s+       Wr +f+i+ +++ll++ l   ++pe+++e +   +++        
  CTQ26928.1 115 LIVPQILATLHVTLKGPAHARAISLYGGIGGIAFIVGQMGGGWLVSA-DiaglgWRNAFFINVPICLLVLALSRRYVPETRRETPSRIDWQGTlylali 212
                 ********************************************933.234577***************999999999999999999999999****** PP

       MFS_1 189 .........................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsgllla 246
                                                          +++g +pl+p+  + l++  +   ++++llff ++sg+++ + l +qe lg++  +++
  CTQ26928.1 213 lccllfpmalgpelhwplwlqlmlvavlpllfamrqsalrqQQRGDHPLLPPRLLQLTSIRF--GMAIALLFFSAWSGFMFCMALTMQEGLGMA-PWQS 308
                 ************************************99999999999999966666777767..8888888888***********99*******.7999 PP

       MFS_1 247 glllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt....ssavllll.vlvliGfglgfvfpsllalasdlappeeagtasgl 340
                 g  + +l+++ +i+al a rl+ r++  r+ll +l++ ++++l+l+ +       +sa+ l + + +liG g+++++ s+  + ++ ++++ ag+ s++
  CTQ26928.1 309 GNSFIALGVAYFISALYAPRLIARYSMGRILLTGLAVQIAGLLLLCATFSRfgvaTSALTL-VpATALIGYGQALIVNSFYRIGMRDISASDAGAGSAI 406
                 97777777788888**********9999999999999988888888888887763444444.459999******************************* PP

       MFS_1 341 fntagslggalgp 353
                  +t++++   lgp
  CTQ26928.1 407 LSTLQQATLGLGP 419
                 *****99888887 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   8.5   1.4e-11   8.3e-08      36     195 ..      36     194 ..      16     196 .. 0.84
   2 !   13.6   4.6   3.8e-06     0.023     252     359 ..     271     378 ..     245     394 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 1.4e-11
                 -SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHH..HHHHHHHHHTTS- CS
    Sugar_tr  36 ksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGla..svlvPmyisEiAp 132
                   + + ++s++++ liv+++ v  ++   ++++lgd +GR+  ++ +++lf i+++l+++a+   s+ +l+++R l G g+ l+  ++l+++ +    p
  CTQ26928.1  36 AITHTLAASATQLELIVALYGVAFAVCLAMGSKLGDNYGRRRLFMWGVALFGIASLLCGMAN---SIGALLAARTLQGAGAALIvpQILATLHVTLKGP 131
                 44555666899***************************************************...****************998445788888888888 PP

                 SCCH..HHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---H CS
    Sugar_tr 133 kklR..galvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPESP 195
                 ++ R  +  +++   a ++G++ + ++    +++ +  gwr  +++++ + ll+l+l    +PE+ 
  CTQ26928.1 132 AHARaiSLYGGIGGIAFIVGQMGGGWLV--SADIAG-LGWRNAFFINVPICLLVLALSrRYVPETR 194
                 8888667889999999999999998864..577777.88********9999988877647888875 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.8e-06
                 ..HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH...HHHHTTSS.. CS
    Sugar_tr 252 rqrlligvvlqifqqltGinaimyysptifenlglsks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.ivalllvakska 347
                   r+ ++++l +f   +G  +++ ++ t+ e lg+ +       i +gv  f++ + a  l+ r ++ ++ll+G+a++++ +++l+ +   ++va+s a
  CTQ26928.1 271 SIRFGMAIALLFFSAWSG--FMFCMALTMQEGLGMAPWqsGNSFIALGVAYFISALYAPRLIARYSMGRILLTGLAVQIAGLLLLCaTFSRFGVATS-A 366
                 458889************..6677799*********99433444889999************************************99999999995.7 PP

                 .CHHHHHHHHHH CS
    Sugar_tr 348 asivaivfialf 359
                  + v  ++++ +
  CTQ26928.1 367 LTLVPATALIGY 378
                 666666666655 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   4.7e-06     0.028      14      87 ..      24      97 ..      13     114 .. 0.88
   2 ?    0.3   0.6     0.026   1.6e+02     330     375 ..     134     181 ..     130     191 .. 0.71
   3 ?   -2.1   0.1      0.15   8.8e+02      48      71 ..     309     332 ..     300     347 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.7e-06
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 14 amvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslllalPh 87
                ++  +++++++  i      + ++  li++++ ++ ++++++ s +g++  r r+  +g+ l++++sll+ + +
  CTQ26928.1 24 LIDTSITNVALDAITHTLAASATQLELIVALYGVAFAVCLAMGSKLGDNYGRRRLFMWGVALFGIASLLCGMAN 97
                55667889999999*******************************************************98766 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.026
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
        OATP 330 seAnlltGvvvipgaalGillgGllvkk..lklsakklaklvlvvsll 375
                 ++A  l G +  +++++G++ gG+lv+     l  +++ ++++ + ll
  CTQ26928.1 134 ARAISLYGGIGGIAFIVGQMGGGWLVSAdiAGLGWRNAFFINVPICLL 181
                 5677788999999************98522445555555555555555 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.15
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  48 gnillilfvsYfggrghrPrwigi 71 
                 gn +++l v+Yf +    Pr+i+ 
  CTQ26928.1 309 GNSFIALGVAYFISALYAPRLIAR 332
                 7788899999****9999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3442.73
//
Query:       CTQ26929.1  [L=288]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-35  120.9   0.1    7.9e-35  120.5   0.1    1.2  1  MLTR_LBD  MmyB-like transcription regulator ligand binding do
    7.8e-15   55.0   5.4    1.8e-14   53.8   3.6    2.3  2  HTH_31    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.026   14.6   0.0      0.065   13.3   0.0    1.7  1  HTH_3     Helix-turn-helix
        0.1   12.7   0.0       0.26   11.4   0.0    1.7  1  PAS_8     PAS domain


Domain annotation for each model (and alignments):
>> MLTR_LBD  MmyB-like transcription regulator ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   0.1   1.8e-38   7.9e-35       1     168 []     119     285 ..     119     285 .. 0.94

  Alignments for each domain:
  == domain 1  score: 120.5 bits;  conditional E-value: 1.8e-38
    MLTR_LBD   1 vrpalrrlLdalepvPAlVldrrwdvlaaNraaraLlgd.paalpeperNllrlvfldpglrpliedweevaralvarLraeaarrpddpalaalvaeL 98 
                 ++p++rr+Ld+l p PA ++ +++d++a+N+ + +L+g  +a+lpe++rN+++l+++++ +r++ie+++ v  ++v+ +ra++a++ +dpa++  +a+ 
  CTQ26929.1 119 ISPGTRRMLDSLMPQPASIQKPNFDIVAWNDSFCRLMGIdFATLPEEDRNCIYLYLTHETWRSRIENRD-VLPTFVSYFRAAMAEHRGDPAWENKLARF 216
                 689***********************************88***************************87.7799************************* PP

    MLTR_LBD  99 saaspefarlwarh.dvaarrsgrkrlrhpevgeltldsetlgtpddptlelvvytaePgdesteaalrlL 168
                  aas ef++lw+++ +v+  ++++k+++hp++g+ +l+ + +  + +++   +++++ P de+ e+al+ L
  CTQ26929.1 217 FAASSEFEALWHQRyEVRGVENQIKHFNHPQLGRFSLQQMYWYSAPRNGS--RLLVYLPMDEAGEQALAWL 285
                 ***********87769************************6666666665..799999*******999977 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   3.6     4e-18   1.8e-14       1      64 []      20      99 ..      20      99 .. 0.99
   2 ?   -0.2   0.0       0.3   1.3e+03      28      43 ..     177     191 ..     175     224 .. 0.72

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 4e-18
      HTH_31  1 aLGalLralRera................GLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerael 64
                +LGa+Lra+Re                  GL+ eevA ++ v ++++++lEqGr+ +ps+avl  +a+al+ +p e+++l
  CTQ26929.1 20 QLGAFLRARRESLdpqrlglprvgrrrtpGLRWEEVAMLADVGVTWYTWLEQGREVNPSEAVLVGVANALQCSPLETRHL 99
                79***************************************************************************998 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.3
      HTH_31  28 estlsrlEqGrrgrps 43 
                 e++ sr+E+    +p+
  CTQ26929.1 177 ETWRSRIENRDV-LPT 191
                 688999999887.674 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.5e-05     0.065       9      53 ..      49      94 ..      44      95 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
                THHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  9 glsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvsld 53
                gl  ee+A +++v ++ ++ +E G e nPs  +l+ +a+aL++s+ 
  CTQ26929.1 49 GLRWEEVAMLADVGVTWYTWLEQGrEVNPSEAVLVGVANALQCSPL 94
                8999****************************************86 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.8e-05      0.26      10      39 ..     131     161 ..     124     185 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.8e-05
       PAS_8  10 spdgiavvd.lgdrivdvNqaalellGys.ad 39 
                 +p++  + + + d iv +N+++++l G + a 
  CTQ26929.1 131 MPQPASIQKpNFD-IVAWNDSFCRLMGIDfAT 161
                 6666666667778.*************55433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2250.30
//
Query:       CTQ26930.1  [L=77]
Description: hypothetical protein CH1034_140075 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 594.17
//
Query:       CTQ26931.1  [L=347]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-06   25.6   8.4    8.6e-06   25.6   8.4    3.4  3  DUF2157   Predicted membrane protein (DUF2157)
  ------ inclusion threshold ------
       0.29   11.5   0.1       0.29   11.5   0.1    2.4  4  DUF3852   Protein of unknown function (DUF3852)


Domain annotation for each model (and alignments):
>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   8.4   9.6e-10   8.6e-06       2     147 .]      17     168 ..      16     168 .. 0.75
   2 ?    1.3   8.4     0.031   2.8e+02      52     115 ..     187     249 ..     171     282 .. 0.67
   3 !    3.4   2.4    0.0066        59      42      78 ..     293     330 ..     281     343 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 9.6e-10
     DUF2157   2 rWvdeglIteeqaqallaryeaeeresarrrsfleallvlGalllglGlilfvAan....W....qglsrlvkfllllvllllslllgavlwrdrrvpp 92 
                  W++ g +t++  q+l++  + +  +    r++ +  ++ +  +++++l +++A      W     + s l+++ll ++l+++++++g++ +r++ + +
  CTQ26931.1  17 AWQASGELTPSDSQRLAQTMRVSPFD---WRRLSRYAFWTALACVLISLGSLFADSelvaWllslFSHSALMRILLPALLAVVCYGWGFRRQRRETQWH 112
                 7*******************988543...3344555555555555555555555432233455555666677777778888888888877777668899 PP

     DUF2157  93 rlgeallllaalllgaaialvgqif.qlsgdaysllllwalllllmayllrsaglg 147
                 +  ea+l+l+++   +a++  g+   + sg+   l+l+ +++  ++ y++rs++++
  CTQ26931.1 113 YSTEAILFLGVVFTAVALWQLGERLdNGSGHIAPLFLAGCVIYGAIGYIARSGLVW 168
                 99********************98846789999999***************99887 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.031
     DUF2157  52 lfvAanWqglsrlvkfllllvllllslllgavlwrdrrvpprlgeallllaalllgaaialvgq 115
                 +   a W g++  ++f+l  ++ll+  +++  l+r+ r+  ++++a++l + ++ +  + ++g 
  CTQ26931.1 187 SGWGAYWLGMNYPIRFVLFGGALLALCYGAQSLLRQ-RQLFTVSKAMGLTYLFIALWIMSIFGN 249
                 555689************************556654.555666666666666665555555543 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.0066
     DUF2157  42 GalllglGlil.fvAanWqglsrlvkfllllvllllsl 78 
                 G  +l++ l + f+  +W+g+++++ fl+l+v l++  
  CTQ26931.1 293 GLTFLAINLYTrFFEFFWNGMHKVLFFLILAVSLAVIG 330
                 55555555555478889*****9999999998888764 PP

>> DUF3852  Protein of unknown function (DUF3852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.6   1.4e+04      74      93 ..      41      61 ..      35      66 .. 0.60
   2 ?   11.5   0.1   3.3e-05      0.29      65     100 ..      94     129 ..      82     133 .. 0.76
   3 ?   -2.7   0.2      0.82   7.4e+03      65     101 ..     238     275 ..     227     279 .. 0.56
   4 ?   -3.2   0.0       1.2   1.1e+04      55      59 ..     320     324 ..     311     338 .. 0.52

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.6
     DUF3852 74 ldYrkhgqle.faapailfag 93
                +d+r+  ++  ++a+a ++++
  CTQ26931.1 41 FDWRRLSRYAfWTALACVLIS 61
                677776666524555555544 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.3e-05
     DUF3852  65 lfvklatayldYrkhgqlefaapailfagLvfsltA 100
                  +v  +  +   r++ q ++++ ailf g+vf+ +A
  CTQ26931.1  94 AVVCYGWGFRRQRRETQWHYSTEAILFLGVVFTAVA 129
                 444455556667999******************988 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.82
     DUF3852  65 lfvklatayl.dYrkhgqlefaapailfagLvfsltAp 101
                 +++   ++ + +Y  +  ++ + + +l  gL+f++ A 
  CTQ26931.1 238 FIALWIMSIFgNYDADSWYQVSQARLLPWGLLFAVAAG 275
                 44433333332455555555555666666777777665 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 1.2
     DUF3852  55 pvidv 59 
                 +++ v
  CTQ26931.1 320 LILAV 324
                 12222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2496.92
//
Query:       CTQ26932.1  [L=105]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-23   80.7   0.0    7.7e-23   80.5   0.0    1.1  1  Gp49      Phage derived protein Gp49-like (DUF891)


Domain annotation for each model (and alignments):
>> Gp49  Phage derived protein Gp49-like (DUF891)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   4.3e-27   7.7e-23       1      90 []      12     100 ..      12     100 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 4.3e-27
        Gp49   1 eeldalpkkarakilaaldlleeggpdlgkplvkkledglwElrpksaggiiRvlyafdpgrkvilLhafqKktqktpkkeielAekrlk 90 
                 +el+alp+ ++ak++++ld+l+++ + l++p  k l++gl+E+r   ++ + R +y+f++g+ ++lL +f+Kktqktp +ei+lA+krl+
  CTQ26932.1  12 KELQALPPIVQAKMIRQLDKLRQNPTALREPDSKPLGQGLFEIRA-LGSVQGRGIYVFQQGKTLFLLRVFVKKTQKTPSSEIRLALKRLE 100
                 689*********************999******************.6667**************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 772.36
//
Query:       CTQ26933.1  [L=95]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-13   50.6   0.0    2.2e-13   50.0   0.0    1.2  1  HTH_3           Helix-turn-helix
    2.1e-13   50.4   1.7    2.9e-13   50.0   1.7    1.2  1  HTH_31          Helix-turn-helix domain
    5.9e-10   39.0   0.5    7.7e-10   38.6   0.5    1.3  1  HTH_37          Helix-turn-helix domain
    8.3e-06   25.5   0.7    1.3e-05   24.8   0.7    1.4  1  HTH_23          Homeodomain-like domain
    9.9e-06   25.5   0.0    1.7e-05   24.8   0.0    1.3  1  HTH_19          Helix-turn-helix domain
    0.00012   21.8   0.1    0.00018   21.3   0.1    1.4  1  HTH_25          Helix-turn-helix domain
    0.00026   21.1   0.0    0.00036   20.7   0.0    1.3  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
    0.00035   20.3   0.1    0.00053   19.7   0.1    1.3  1  HTH_38          Helix-turn-helix domain
     0.0005   20.5   0.1    0.00077   19.8   0.1    1.4  1  HTH_26          Cro/C1-type HTH DNA-binding domain
     0.0036   16.8   0.0      0.006   16.1   0.0    1.4  1  HTH_24          Winged helix-turn-helix DNA-binding
     0.0082   15.7   0.2      0.013   15.0   0.2    1.4  1  Sigma70_r4      Sigma-70, region 4
     0.0098   15.9   1.1      0.016   15.2   1.1    1.4  1  HTH_Crp_2       Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.1   0.2      0.011   15.1   0.2    1.9  2  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.023   14.9   0.2      0.029   14.6   0.2    1.1  1  UMP1            Proteasome maturation factor UMP1
      0.026   14.5   0.7        0.1   12.6   0.1    2.1  3  HTH_29          Winged helix-turn helix
       0.03   13.9   0.0      0.044   13.3   0.0    1.3  1  GerE            Bacterial regulatory proteins, luxR family
      0.035   13.9   0.2      0.055   13.3   0.2    1.3  1  LacI            Bacterial regulatory proteins, lacI family
      0.037   13.9   0.3       0.06   13.2   0.3    1.5  1  MarR_2          MarR family
      0.059   13.5   0.4      0.088   13.0   0.4    1.4  1  Trp_repressor   Trp repressor protein
       0.06   13.0   0.1       0.14   11.9   0.0    1.6  2  Sigma70_r4_2    Sigma-70, region 4
       0.16   12.1   0.7       0.83    9.8   0.3    2.4  2  HTH_7           Helix-turn-helix domain of resolvase


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   2.6e-16   2.2e-13       1      51 [.      38      88 ..      38      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 2.6e-16
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSE CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvs 51
                l+++R+q+gl+++++A+++Gvs  t+sr+E ++++ sl+tl ++a a+g++
  CTQ26933.1 38 LAQWREQAGLTRAQVAQRMGVSAPTVSRMEANITRASLDTLTRYALACGIK 88
                689**********************************************86 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   1.7   3.4e-16   2.9e-13       4      57 ..      36      88 ..      33      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 3.4e-16
      HTH_31  4 alLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                  L+++Re+aGL++++vA+r gvs+ t+sr+E     r s+++l+++a a+g  
  CTQ26933.1 36 TMLAQWREQAGLTRAQVAQRMGVSAPTVSRMEANIT-RASLDTLTRYALACGIK 88
                679*********************************.9*************985 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.5     9e-13   7.7e-10      14      73 ..      28      87 ..      14      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 9e-13
                HHHHHHHHH.HHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTTE CS
      HTH_37 14 kaKaqlala.iaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalGq 73
                + + q +++ +a+ +e+ +l+ +++aq++g++ P vsr++ ++++r sld+L +++ a G 
  CTQ26933.1 28 QERQQRLRTmLAQWREQAGLTRAQVAQRMGVSAPTVSRME-ANITRASLDTLTRYALACGI 87
                344444444499****************************.6*************999885 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.7   1.5e-08   1.3e-05       2      37 ..      28      66 ..      27      79 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.5e-08
      HTH_23  2 asereRlr.illllae..GlsvreIAreLgvsrrTvyrw 37
                ++ ++Rlr +l   +e  Gl+++++A+++gvs  Tv+r 
  CTQ26933.1 28 QERQQRLRtMLAQWREqaGLTRAQVAQRMGVSAPTVSRM 66
                56788888988888877********************96 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0     2e-08   1.7e-05       3      59 ..      37      93 ..      36      94 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2e-08
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgid.leyl 59
                +L + Re++glt +++a+r g+s    s  E + +  +s ++l ++a a+gi  ++ l
  CTQ26933.1 37 MLAQWREQAGLTRAQVAQRMGVSAPTVSRMEANIT-RASLDTLTRYALACGIKhPQVL 93
                58899****************************77.99**************866655 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   2.1e-07   0.00018       1      34 [.      37      70 ..      37      84 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.1e-07
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT- CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEedd 34
                +L + Re++gl++ +va++  +++ ++ ++E++ 
  CTQ26933.1 37 MLAQWREQAGLTRAQVAQRMGVSAPTVSRMEANI 70
                68999**************************985 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.2e-07   0.00036      10      42 ..      34      66 ..      27      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.2e-07
                    HHHHHHHHHHHSSB-HHHHHHHHTS-HHHHHHH CS
  Fe_dep_repress 10 LetIYtlseekkvvktkdlaerLnvspssVsem 42
                    L+t +    e++  +++++a+r++vs+++Vs m
      CTQ26933.1 34 LRTMLAQWREQAGLTRAQVAQRMGVSAPTVSRM 66
                    777777777999999****************99 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   6.2e-07   0.00053      10      39 ..      35      65 ..      31      66 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.2e-07
      HTH_38 10 ReeIerll.aeGlslreIArrLgrspsTIsR 39
                R ++++++ ++Gl+ +++A+r+g+s  T+sR
  CTQ26933.1 35 RTMLAQWReQAGLTRAQVAQRMGVSAPTVSR 65
                8999***9569*******************9 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   9.1e-07   0.00077       2      48 ..      38      83 ..      33      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 9.1e-07
      HTH_26  2 LrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCd 48
                L ++  + g+t++++a++ g+sa+t+sr+  + ++r sldtL + + 
  CTQ26933.1 38 LAQWREQAGLTRAQVAQRMGVSAPTVSRMEAN-ITRASLDTLTRYAL 83
                5566678999**********************.79*******98765 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     7e-06     0.006      13      36 ..      42      65 ..      35      66 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7e-06
      HTH_24 13 qknprisqreLAerlglSpstvnr 36
                +++++++ +++A+r g+S +tv+r
  CTQ26933.1 42 REQAGLTRAQVAQRMGVSAPTVSR 65
                5799******************98 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   1.5e-05     0.013      18      43 ..      44      69 ..      31      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-05
                TTT--HHHHHHHHTS-HHHHHHHHHH CS
  Sigma70_r4 18 geglTleEIgerlgiSrerVrqiekr 43
                  glT +++++r+g+S  +V++ e++
  CTQ26933.1 44 QAGLTRAQVAQRMGVSAPTVSRMEAN 69
                5799******************9976 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.1   1.8e-05     0.016       2      41 ..      33      66 ..      28      84 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-05
                HHHHHHHHHHCTTTCEEEEEHHHHHHHHHTTSSHHHHHHH CS
   HTH_Crp_2  2 RlArfLlrlaeraggeielpltqeelAsmlGltretvsri 41
                Rl + L +++e      +  lt+++ A+++G++  tvsr+
  CTQ26933.1 33 RLRTMLAQWRE------QAGLTRAQVAQRMGVSAPTVSRM 66
                55555554433......2469******************8 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       3.9   3.3e+03      39      45 ..       6      12 ..       6      13 .. 0.81
   2 ?   15.1   0.2   1.3e-05     0.011      27      47 ..      46      66 ..      32      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.9
  HTH_Tnp_ISL3 39 vSwtTVw 45
                  ++w+T++
    CTQ26933.1  6 IDWDTLK 12
                  68***86 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.3e-05
  HTH_Tnp_ISL3 27 srsvkavArqlgvSwtTVwri 47
                  + ++++vA+++gvS+ TV r+
    CTQ26933.1 46 GLTRAQVAQRMGVSAPTVSRM 66
                  4699**************996 PP

>> UMP1  Proteasome maturation factor UMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   3.4e-05     0.029       8      67 ..       9      73 ..       7      79 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.4e-05
        UMP1  8 dtlra...Glkslksq..l.nssHpLesrlknweetqeklklemlrniyGlaePlrrqmElkivsk 67
                dtl++   G  +++++  + + +  L+ +l +w+ +q  l + ++++  G+++P   +mE +i++ 
  CTQ26933.1  9 DTLKTellGQPEVQAAfdAqERQQRLRTMLAQWR-EQAGLTRAQVAQRMGVSAPTVSRMEANITRA 73
                6666666677666666332377889*********.7889999999999**************9986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.1   3.5e+03      42      55 ..      22      36 ..      20      40 .. 0.69
   2 ?   12.6   0.1   0.00012       0.1       4      31 ..      39      65 ..      36      67 .. 0.85
   3 ?   -0.5   0.0       1.5   1.3e+03      19      33 ..      68      82 ..      65      85 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.1
      HTH_29 42 aalld.rrrsgrprn 55
                +a+ d + r+ r+r+
  CTQ26933.1 22 QAAFDaQERQQRLRT 36
                566677778888776 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00012
      HTH_29  4 allllaeGvstvsqiAkllglsrrtvyr 31
                a +    G+ t +q+A+++g+s +tv r
  CTQ26933.1 39 AQWREQAGL-TRAQVAQRMGVSAPTVSR 65
                556667788.9***************98 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.5
      HTH_29 19 Akllglsrrtvyrwl 33
                A +++ s +t  r+ 
  CTQ26933.1 68 ANITRASLDTLTRYA 82
                778999999999985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.1e-05     0.044      16      42 ..      45      71 ..      31      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.1e-05
                TTS-HHHHHHHHTS-HHHHHHHHHHHH CS
        GerE 16 eGksnkeIAeelniSekTVkvhksnim 42
                +G++  ++A+++++S+ TV+   +ni 
  CTQ26933.1 45 AGLTRAQVAQRMGVSAPTVSRMEANIT 71
                6******************98888875 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   6.4e-05     0.055       5      19 ..      52      66 ..      50      80 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.4e-05
                HHHHCTS-HHHHHHH CS
        LacI  5 VArlAGVSkaTVSrv 19
                VA++ GVS+ TVSr+
  CTQ26933.1 52 VAQRMGVSAPTVSRM 66
                9*************7 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   7.1e-05      0.06      15      41 ..      42      66 ..      30      75 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.1e-05
                HCTTTSEEEHHHHHHHHTSSHHHHHHH CS
      MarR_2 15 grrpgrdltvgelarrlglsksavsri 41
                +   g  lt +++a+r+g+s ++vsr+
  CTQ26933.1 42 REQAG--LTRAQVAQRMGVSAPTVSRM 66
                55667..9******************7 PP

>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4    0.0001     0.088      48      75 ..      45      72 ..      13      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.0001
  Trp_repressor 48 eelsqreIaeelgvSiAtItRvsrsLkt 75
                    +l+  ++a+ +gvS+ t++R ++++  
     CTQ26933.1 45 AGLTRAQVAQRMGVSAPTVSRMEANITR 72
                   578999****************999875 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       6.4   5.5e+03       2      10 ..      32      40 ..      31      40 .. 0.77
   2 ?   11.9   0.0   0.00016      0.14      25      44 ..      45      64 ..      41      66 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.4
                  HHHHHHHTT CS
  Sigma70_r4_2  2 qalrealae 10
                  q+lr++la+
    CTQ26933.1 32 QRLRTMLAQ 40
                  789999986 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00016
                  S---HHHHHHHHT--HHHHH CS
  Sigma70_r4_2 25 eglsykEIAellgisegtVk 44
                   gl+ +++A+++g+s  tV 
    CTQ26933.1 45 AGLTRAQVAQRMGVSAPTVS 64
                  699***************96 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.3   0.00097      0.83      10      39 ..      30      64 ..      26      69 .. 0.76
   2 ?   -1.0   0.0       2.3   1.9e+03      30      38 ..      67      75 ..      65      75 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00097
                HHGGGGSSTTT.....T--STTTSSSS---SSSS- CS
       HTH_7 10 dinrvvkLlee.....GisiskIAkevnisRsTvY 39
                +++r++++l++     G +++++A + ++s  Tv 
  CTQ26933.1 30 RQQRLRTMLAQwreqaGLTRAQVAQRMGVSAPTVS 64
                67777777754333449*************99985 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.3
                SS---SSSS CS
       HTH_7 30 evnisRsTv 38
                e ni+R+++
  CTQ26933.1 67 EANITRASL 75
                569***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       948  (0.0528752); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 689.43
//
Query:       CTQ26934.1  [L=21]
Description: Putative transcriptional regulator (LysR familiy) (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (21 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        87  (0.00485247); expected 358.6 (0.02)
Passed bias filter:                       71  (0.00396006); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 169.49
//
Query:       CTQ26935.1  [L=217]
Description: dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-31  109.4   0.1    2.3e-31  109.2   0.1    1.1  1  Nitroreductase   Nitroreductase family
     0.0033   17.6   0.5          2    8.6   0.2    2.4  2  GramPos_pilinD1  Gram-positive pilin subunit D1, N-terminal d
     0.0072   15.9   0.0      0.012   15.2   0.0    1.4  1  TM1586_NiRdase   Putative TM nitroreductase


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   0.1   3.8e-35   2.3e-31       2     170 .]       8     193 ..       7     193 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 3.8e-35
                     HH--B---B-S--.--HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEEE CS
  Nitroreductase   2 rkRrSiRkFddep.vpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvliv 95 
                     +kR+S+++Fd+++ +++ e e++    +++Ps++n+qpw+f+v++++e ++++a+aa +    +e++  +a++ +     ++a+ a+++a++  v
      CTQ26935.1   8 LKRYSTKAFDATKkLTAGEAEQLKTLLQYSPSSTNSQPWHFIVASTDEGKARVAKAASGTYVFNERKILDASHVV----VFCAKTAMDDAWLQRV 98 
                     69***********************************************************************99....9*************** PP

                     E.....................---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S...SEEEEEEEE CS
  Nitroreductase  96 i.....................vatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglp.deeeivvliav 168
                     +                     ++++++++rk+ +++++++++++++ + n+lL  +a+Gl+++pi+g+d a   +++ ++l+ +++  +v+++v
      CTQ26935.1  99 VdqeeadgrfatpdakaanhkgRTFFADMHRKELKDDDQWMAKQVYLNVGNFLLGVAAMGLDAVPIEGVDFAI--LDEEFDLKaQGYTSLVVVPV 191
                     *************************************************************************..********988********* PP

                     E- CS
  Nitroreductase 169 Gy 170
                     G+
      CTQ26935.1 192 GH 193
                     *7 PP

>> GramPos_pilinD1  Gram-positive pilin subunit D1, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.2   0.00033         2      74     125 ..      14      74 ..       6      88 .. 0.74
   2 !    6.9   0.0    0.0011       6.4      39      56 ..     146     174 ..      87     188 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00033
  GramPos_pilinD1  74 eatkklkeaakakagddakeaklskatak............eGianftklkkgrdgvYlivEtk 125
                      +a + +k+ ++ +a++ ++  + s  +++            eG+a+++k +    g+Y++ E k
       CTQ26935.1  14 KAFDATKKLTAGEAEQLKTLLQYSPSSTNsqpwhfivastdEGKARVAKAAS---GTYVFNERK 74 
                      44555555555555555555555544444778999999999********998...******987 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0011
  GramPos_pilinD1  39 t...........gksskelaGVtFavydv 56 
                      +           g ++ +++GV Fa+ d 
       CTQ26935.1 146 NvgnfllgvaamGLDAVPIEGVDFAILDE 174
                      033444455556899**********9976 PP

>> TM1586_NiRdase  Putative TM nitroreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     2e-06     0.012     160     191 ..      27      58 ..       5      73 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2e-06
                     HHHHHHHHHTS--GGG----EEE.E-SSEE.. CS
  TM1586_NiRdase 160 fkeileaarlAPsAlNqqpwrfelkdddeiki 191
                      +++  +  ++Ps++N+qpw+f + + de k+
      CTQ26935.1  27 AEQLKTLLQYSPSSTNSQPWHFIVASTDEGKA 58 
                     4455556779*************888776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1661.37
//
Query:       CTQ26936.1  [L=122]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-20   73.3   0.0    2.1e-20   73.1   0.0    1.1  1  YjbR      YjbR


Domain annotation for each model (and alignments):
>> YjbR  YjbR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   1.2e-24   2.1e-20       1      85 [.      15     105 ..      15     106 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 1.2e-24
                 TTSTTEEEEECTTS-.EEEECCCEEEEEEECCCCG..EEEES-HHHHHHHHHSSTTEEE-TS..TTTEEEEETTS.S-HHHHHHHHHHHHH CS
        YjbR   1 lslpgatedfpfgpe.lvfkvggKmFallgleees..lnlkcdpeeaeaLreqypaiapgyh..kkhWitvlldg.vpddeleelideSYr 85 
                 l++p +++  pfgpe +vfkv g++F+++++ +++  +nlk++p+++    + y +i pgyh  kkhWitv+  + +++d+l+elid+S+ 
  CTQ26936.1  15 LTYPFTEHCWPFGPEyDVFKVDGRIFMITMTIRGRalVNLKAEPQKSLLNQQIYRSIEPGYHmnKKHWITVVPGEdISEDLLAELIDDSWH 105
                 67899********999***************99999******************99********99*****87669**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 972.26
//
Query:       CTQ26937.1  [L=193]
Description: Transcriptional regulator, TetR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-14   52.0   2.1    8.5e-14   51.1   2.1    1.5  1  TetR_N    Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.032   14.5   0.0      0.056   13.7   0.0    1.4  1  RGS       Regulator of G protein signaling domain
      0.061   13.6   0.2       0.18   12.1   0.2    1.9  1  KGG       Stress-induced bacterial acidophilic repeat motif


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   2.1   1.4e-17   8.5e-14       1      47 []      13      58 ..      13      58 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 1.4e-17
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                +l+aA + fa+ G++ +++++IA++AGv++g+l+ryF++K+eLl++l
  CTQ26937.1 13 LLEAATAAFAQSGIA-ASTSAIARSAGVAEGTLFRYFATKDELLNEL 58
                79*************.77**************************996 PP

>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   9.4e-06     0.056      29     109 ..      57     150 ..      39     157 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.4e-06
                 HHHHHHH.HHHTS.....SHHHHHHHH.HHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCSS......STTTTTTHHHHHHHHHHHHHHHHHHH CS
         RGS  29 sFwlave.efkka.....keqeelkkk.akeIyneylapsspkelnidkklreelekrleke......qpsrklfeeaqeevfellekdsypkF 109
                 +++la++ ++ ++     +++e++ k+ a++I+n y++ +  + ++ +   r  l +r+++e      +  ++l e++q +v e++ +++y+ F
  CTQ26937.1  57 ELYLAIKlRLVRTmiaglDPDEKRPKEnARNIWNSYIDWGVRNPMEHKAIRRMALSERITDEtrrqvkESFPELNEMCQLSVKEIFLSEAYRAF 150
                 4444444222222577776667766666*********98888777777766777777777766766666999*******************999 PP

>> KGG  Stress-induced bacterial acidophilic repeat motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2     3e-05      0.18       2      12 ..     165     176 ..     165     176 .. 0.97

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3e-05
         KGG   2 FAn.DpEkarEI 12 
                 FA+ Dp++arEI
  CTQ26937.1 165 FAShDPQRAREI 176
                 9999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1582.13
//
Query:       CTQ26938.1  [L=366]
Description: Metallo-beta-lactamase domain protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-42  143.3   0.1      1e-41  142.7   0.1    1.3  1  Lactamase_B_2  Beta-lactamase superfamily domain
    9.3e-21   74.4   0.0    1.4e-20   73.8   0.0    1.2  1  Lactamase_B_3  Beta-lactamase superfamily domain
    0.00047   20.2   0.2     0.0014   18.6   0.1    1.9  2  Lactamase_B    Metallo-beta-lactamase superfamily
  ------ inclusion threshold ------
      0.028   14.3   1.8      0.058   13.3   0.5    2.1  2  DUF2793        Protein of unknown function (DUF2793)


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7   0.1   2.3e-45     1e-41       2     200 ..     120     314 ..     119     315 .. 0.92

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 2.3e-45
                    EEEES--TT.......HHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE CS
  Lactamase_B_2   2 riLiDagpd.......lrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvhel 90 
                    riLiD++++       +   a +   P +  + +p+id+++++h+HyDHl ++ t+r+l pk  +++ p+gv+++l+ ++         +  ++e 
     CTQ26938.1 120 RILIDPVFSdyaapfsFINKAFPGDYPWR-AEGMPEIDLLIISHDHYDHL-DYATIRALLPKIKRVITPLGVGSHLRYWGMD-------GALITEA 206
                    9********98888776666677767776.8889****************.*******999867799************764.......4456779 PP

                    -TTSEEEECSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEECTTEEEEEESS-S---..HHHHHHHCT-SEEEEE-S-SSTTHHHHHHT---STSH CS
  Lactamase_B_2  91 dwgesfelgdggleitatparhksgrrldrnagdtlGlriegggkrvyyigDtgyip..eeigerlggadllllditayeddemirhmgHltpeea 184
                    dw++ +   d +l++++ parh+sgr+l+rn+++++++++ ++++++yy+gD+gy p  ++ig+++g++dl++++ + y++d+   + +H+ p+e+
     CTQ26938.1 207 DWQQAVPASD-ELTVHVLPARHFSGRGLKRNQTLWASFLFVTPQQKIYYSGDSGYGPhfKAIGDEFGPVDLAIMENGQYDQDW---KYIHMMPDET 298
                    *999999987.69********************************************999***********************...89******** PP

                    HHHCTTSSSSEEEEES CS
  Lactamase_B_2 185 veaaadlgakrlvliH 200
                    ++aa+dl+a+ +++ H
     CTQ26938.1 299 AQAADDLRARAVLPGH 314
                    **************99 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   3.1e-24   1.4e-20       4     163 .]     106     314 ..     104     314 .. 0.85

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 3.1e-24
  Lactamase_B_3   4 wlghnsflletagarilvDPfkanlgyeppa..................eeaDlvlisqaledHahletlkql.aenvkvlee............. 67 
                    wlgh+s+ l+ ag+ril+DP++   +y++p                   +e+Dl++is+++ dH + +t+++l  ++ +v+++             
     CTQ26938.1 106 WLGHSSWYLQLAGKRILIDPVF--SDYAAPFsfinkafpgdypwraegmPEIDLLIISHDHYDHLDYATIRALlPKIKRVITPlgvgshlrywgmd 199
                    *********************6..344444445556677777778999************************976777777778888888888888 PP

  Lactamase_B_3  68 ........ges.lev.ggleiravatshdavggserge..nngflleqdgltiyhlGhlahelsseel.kelgrvDvvltPvgg......pltlgq 144
                            +++ + + ++l +   ++ h ++ g +r++     fl+   + +iy+ G+ ++ ++++ + +e+g+vD+ ++  g        + + +
     CTQ26938.1 200 galiteadWQQaVPAsDELTVHVLPARHFSGRGLKRNQtlWASFLFVTPQQKIYYSGDSGYGPHFKAIgDEFGPVDLAIMENGQydqdwkYIHMMP 295
                    888887884442444369999999999999999888874566799999*************999998879***********999*****9999*** PP

  Lactamase_B_3 145 eealelakrLkpklvlPmh 163
                    +e +++a  L+++ vlP h
     CTQ26938.1 296 DETAQAADDLRARAVLPGH 314
                    *****************66 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   3.2e-07    0.0014       3      58 ..     106     168 ..     104     234 .. 0.94
   2 ?   -1.0   0.0      0.34   1.5e+03     137     162 ..     244     269 ..     240     314 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.2e-07
                  CCSSEEEEEEETTCEEEES--SCHHHHHHHH.......HHHHHTSGGGGEEEEE-SBSSHHHH CS
  Lactamase_B   3 pdpvnsyliegdggviLiDtGtsteaaraal.......elaalglkpkdvdavilTHlHlDHi 58 
                  +++++s++++  g+ iLiD+ +s  aa +         ++  +  +  ++d +i++H H+DH 
   CTQ26938.1 106 WLGHSSWYLQLAGKRILIDPVFSDYAAPFSFinkafpgDYPWRAEGMPEIDLLIISHDHYDHL 168
                  578899*********************9988*******************************5 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.34
                  EEEETTCCEEEECTTTSSHHCCCCCC CS
  Lactamase_B 137 vveygggkvlftGDallagetgridl 162
                   +  + +k+ ++GD ++ +    i+ 
   CTQ26938.1 244 LFVTPQQKIYYSGDSGYGPHFKAIGD 269
                  56677889999999999665554444 PP

>> DUF2793  Protein of unknown function (DUF2793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.65   2.9e+03      40      54 ..      56      70 ..      33      77 .. 0.70
   2 ?   13.3   0.5   1.3e-05     0.058      40      77 ..     321     359 ..     318     364 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.65
     DUF2793 40 atgaWagkagkialw 54
                +t  ++g+++ +a+w
  CTQ26938.1 56 PTPGFTGQKNMLAAW 70
                555677777777777 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.3e-05
     DUF2793  40 atgaWagkagkialwedg.aWrflapaeGwlawvedega 77 
                 a+ +W +  +++a++++g aWr l+p +G  +wv+d+ +
  CTQ26938.1 321 AKHSWDEPYQRLAAASEGrAWRLLTPVQGEPVWVADKTQ 359
                 66789999999998866648***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2785.79
//
Query:       CTQ26939.1  [L=113]
Description: Transcriptional activator RamA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-23   82.1   0.4    3.1e-23   81.8   0.4    1.1  1  HTH_18    Helix-turn-helix domain
    2.3e-17   62.6   0.1    3.4e-08   33.4   0.0    2.1  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.4   3.4e-27   3.1e-23       1      80 [.      28     106 ..      28     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 3.4e-27
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +a+++g+s ++Lqrlf ++ g +  +y+r+++l  A r+L+ +t++ v +i+l++GF+++++F+r f ++f+++P++yr+
  CTQ26939.1  28 IARHAGYSKWHLQRLFLQYKGESLGRYIRERKLLLAARDLR-DTDQRVYDICLKYGFDSQQTFTRVFTRTFNQPPGAYRK 106
                 69**************************************6.6************************************8 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   3.8e-12   3.4e-08       1      42 []      15      56 ..      15      56 .. 0.97
   2 !   27.6   0.1   2.5e-10   2.2e-06       2      42 .]      68     106 ..      67     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 3.8e-12
                HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42
                + +nl+++l+i+diA ++g+S  +++rlF ++ G++   y++
  CTQ26939.1 15 IDDNLHQPLRIDDIARHAGYSKWHLQRLFLQYKGESLGRYIR 56
                789**********************************99996 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 2.5e-10
                 HCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   2 renlstnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 r   +t+ ++ di+  +gf S+++F+r+F +++++ P +yr+
  CTQ26939.1  68 R---DTDQRVYDICLKYGFdSQQTFTRVFTRTFNQPPGAYRK 106
                 5...6788899*****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 848.26
//
Query:       CTQ26940.1  [L=82]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-47  158.1   9.1    6.5e-47  158.0   9.1    1.0  1  DUF1158    Protein of unknown function (DUF1158)
  ------ inclusion threshold ------
       0.47    9.5   5.0       0.58    9.2   5.0    1.4  1  FUSC-like  FUSC-like inner membrane protein yccS


Domain annotation for each model (and alignments):
>> DUF1158  Protein of unknown function (DUF1158)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.0   9.1   7.3e-51   6.5e-47       1      79 []       1      79 [.       1      79 [. 0.99

  Alignments for each domain:
  == domain 1  score: 158.0 bits;  conditional E-value: 7.3e-51
     DUF1158  1 mkhpletllsaagilllallsalllpapalslalakklvttfhlldlnqlytlvfclwflllgaveylvirfvwrrwfs 79
                mkhpletllsaagilllalls+lllpap+l+l+la+klv+tfh++dlnqlyt++fclwfl+lga+eylv+r+vwrrwfs
  CTQ26940.1  1 MKHPLETLLSAAGILLLALLSCLLLPAPSLGLTLAQKLVETFHMMDLNQLYTVLFCLWFLALGAIEYLVLRWVWRRWFS 79
                9*****************************************************************************8 PP

>> FUSC-like  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.0   6.5e-05      0.58      53      97 ..      35      79 ..       4      82 .] 0.89

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 6.5e-05
   FUSC-like 53 atLlvaiytmlgasqepeiwqqplllllGalwYgllsllwsllfp 97
                a  lv ++ m++++q  ++++    l lGa+ Y++l ++w ++f+
  CTQ26940.1 35 AQKLVETFHMMDLNQLYTVLFCLWFLALGAIEYLVLRWVWRRWFS 79
                66689999999**98889************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 631.69
//
Query:       CTQ26941.1  [L=907]
Description: putative cation-transporting ATPase F [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-53  180.9   1.8    1.7e-53  180.9   1.8    3.3  4  E1-E2_ATPase     E1-E2 ATPase
      8e-40  136.5  11.4      8e-40  136.5  11.4    2.0  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    1.1e-20   74.9   3.9    2.5e-19   70.4   3.9    2.4  1  Hydrolase        haloacid dehalogenase-like hydrolase
    6.2e-19   67.5   0.0    1.6e-18   66.2   0.0    1.8  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    4.6e-13   49.1   0.0    9.4e-13   48.1   0.0    1.6  1  Cation_ATPase    Cation transport ATPase (P-type)
    7.2e-06   25.9   0.8     0.0011   18.8   0.5    2.2  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
     0.0032   17.9   0.1      0.038   14.4   0.0    2.6  3  HAD              haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.85   2.2e+03     113     145 ..      68      96 ..      59     110 .. 0.52
   2 !  180.9   1.8   6.5e-57   1.7e-53       2     181 .]     128     321 ..     127     321 .. 0.98
   3 ?   -1.9   0.0      0.82   2.1e+03      94     135 ..     683     724 ..     666     755 .. 0.52
   4 ?    1.0   0.1       0.1   2.6e+02     106     156 ..     763     817 ..     748     822 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.85
                   HHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT CS
  E1-E2_ATPase 113 kkldklgkvlvpvvlliallvflialllgksla 145
                   ++l  +  vl+ v l++a+l++++     +++ 
    CTQ26941.1  68 RFLAHFNDVLIYVLLAAAALTAIMG----HWVD 96 
                   4455555555555555555555554....4443 PP

  == domain 2  score: 180.9 bits;  conditional E-value: 6.5e-57
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-............G-TTEE-TT-EEEE-EEEEEE CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvek............ekgdmvfsGtvvvsgeakavV 85 
                   +l++ a+v r+g+ e+i++++lvpGDiv+l+agdrvpaD+r++e ++ +v+e++LTGEs+ v+k            ++ +mvfsGt+v +g  ++vV
    CTQ26941.1 128 MLSSDARVQRNGKHETIPTRDLVPGDIVILRAGDRVPADMRLIETHNlRVEEAILTGESTVVDKitdalegdlplgDRVNMVFSGTTVSAGGGVGVV 224
                   67899******************************************************************************************** PP

                   EE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT CS
  E1-E2_ATPase  86 tatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.eallralallvaaiPcaLplavplalalgarrlakk 181
                   tatg +telg+i ++++  ++ +tpl  ++dklgk +++++l++++++f++ l l++ +  e ll+ ++l+vaa+P++Lp++++++l+lg++ +a+k
    CTQ26941.1 225 TATGAQTELGHINQMMAGIEKHRTPLLVQMDKLGKAIFAIILAMMVALFIFSLALRDIPMgELLLSLISLAVAAVPEGLPAIISIILSLGVQTMARK 321
                   *******************************************************99999888999*****************************97 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.82
                   TTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  94 lgkiarlveeakskktplqkkldklgkvlvpvvlliallvfl 135
                   +++ia++v+e ++   +l+k +  ++ +  + +lli++++++
    CTQ26941.1 683 FATIASSVKEGRRVYDNLKKTILFIMPTNLAQGLLIIIALLA 724
                   566666666665444444444333333322222222222222 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.1
                   ----HHHHHHHHHHHH.HHHHHHHHHHHHHHS-ST...TTSSTTHHHHHHHHHHH CS
  E1-E2_ATPase 106 skktplqkkldklgkv.lvpvvlliallvfliall...lgkslaeallralallv 156
                   + ++  q+ +d ++ + +++v+ +ia+++f++  +   +g+s+ ++ +  l++lv
    CTQ26941.1 763 PPRKTGQHVMDGFAVWrVAFVGSMIAIAAFILEAWlapRGHSPEFIRTVLLQMLV 817
                   5667779999999999889999999999999877633444444444444444444 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.6      0.81   2.1e+03     130     153 ..     262     278 ..     245     315 .. 0.56
   2 !  136.5  11.4   3.1e-43     8e-40       2     182 .]     728     899 ..     727     899 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.81
  Cation_ATPase_C 130 laillslllqvlivyvpglnavfg 153
                      +ai+l+++++++i         + 
       CTQ26941.1 262 FAIILAMMVALFIFS-------LA 278
                      333333333322222.......22 PP

  == domain 2  score: 136.5 bits;  conditional E-value: 3.1e-43
  Cation_ATPase_C   2 lplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgisekenklssnyaqtmaF 95 
                       pl++++iLw+n+ t  ++++ La+e +e+++m+rpPrk+ ++++++  ++r++++g ++a++++++ ++ +   g s++       + +t+ +
       CTQ26941.1 728 IPLTPVLILWMNMATSATLSFGLAFEAAERNVMNRPPRKTGQHVMDGFAVWRVAFVGSMIAIAAFILEAWLAP-RGHSPE-------FIRTVLL 813
                      69****************************************************************9955554.555554.......5****** PP

  Cation_ATPase_C  96 itlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsleewlialllalvvllvdelvKll 182
                       +lv +q+++++n+rs++   ++ +gl +nk ++l++ + ll+q++i+yvp ++++fgt+ l+l  w+++l+++++++lv+e+ K+l
       CTQ26941.1 814 QMLVTAQWVYMINCRSSDSFSLS-MGLLRNKGIWLVTGVLLLMQLVIIYVPLMQSMFGTEALPLRYWFVTLVIGVAMFLVVEIEKRL 899
                      ****************7777777.9999********************************************************975 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   3.9   9.8e-23   2.5e-19       1     210 []     337     657 ..     337     657 .. 0.64

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 9.8e-23
                 SSEEEEESBTTTBCHHHHHHHHHHHH.........................CHHHHHHHHHH......................HHCHHHHHH.HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxx......................xxxxxxxxx.xxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa.........................alalaaaletg......................sehpigkal.vaaak 51 
                 +++v+ Dk+GTLt  e+ v+ +i                            +++ + +let                       +  p   al v aak
  CTQ26941.1 337 MTVVCSDKTGTLTMNEMTVKAIITADccyrvegdsyepqgriflegsdepvQVQPGTVLETWlrtidlcndsqltqderglwgiTGGPTEGALkVLAAK 435
                 5789*****************999997777777777777777777776666444444444434333444444444556666666666666666666666 PP

                 HHHHHH.HHHHHETTTE.................HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH............................. CS
                 xxxxxx.xxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................. RF
   Hydrolase  52 arsgal.tgfatfigrg.................ayaigkpewltaldippdlgaaigsaqsqgrtvall............................. 103
                 a  +a+ ++  + i +                  +                                  l                             
  CTQ26941.1 436 AQLPAVeARLVAKIPFDsqykymstlqhidgdarV----------------------------------Litgapdvifamcreqmsrhgavpfeaqyw 500
                 66444433333322222344444555544555553..................................133333333333333444444444444444 PP

                 ....................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.......... CS
                 ....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......... RF
   Hydrolase 104 ....................................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.......... 156
                                                         l++  + dp  ++pea +a+++ + agi+v ++tgd+p+ta+++ + lG          
  CTQ26941.1 501 eeemarfarqglrmvaaackpasldattlnhedlqeGLIFLGIAGMMDP--PRPEAIDAIHACQTAGIRVKMITGDHPQTAMSIGQMLGitnssqamtg 597
                 5555555555555555677777777777777655433355566777799..***************************************999655554 PP

                 ..GGGESEEEEHHCES...........STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 ..xxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 157 ..ddyfdaviasdiet...........vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                           ++ +++           +a  spe+k+++++ Lq ++e v m GDgvnDa+al++A+
  CTQ26941.1 598 yqL-------EHMDDAalakaaveydiFARTSPEHKLRLVKALQDNGEVVGMTGDGVNDAPALRQAD 657
                 443.......444444544344447778888***********************************8 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   6.1e-22   1.6e-18       2      68 ..      22      87 ..      21      88 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 6.1e-22
  Cation_ATPase_N  2 halsleevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalv 68
                     +++++++vl++ + +   GL++a+aaerl ++GpN+l+ekk k+ w ++l +f+++l+++Ll+aa++
       CTQ26941.1 22 WQQTVDAVLAQTK-SQAAGLSSADAAERLNTCGPNALPEKKGKPGWLRFLAHFNDVLIYVLLAAAAL 87
                     89**********9.9**************************************************97 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   3.7e-16   9.4e-13       2      89 ..     404     484 ..     403     486 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 3.7e-16
  Cation_ATPase   2 lcNsaafsensekdevkllGnktEsALlvlaeklgldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrCt 89 
                    lcN++++  ++e + + ++G +tE AL vla+k++l   e       v++ipF+s+ K+ms++  ++  +  r+++ GAp++i++ C 
     CTQ26941.1 404 LCNDSQL-TQDERGLWGITGGPTEGALKVLAAKAQLPAVE----ARLVAKIPFDSQYKYMSTLQHID--GDARVLITGAPDVIFAMCR 484
                    8******.**************************555444....4579*****************86..******************7 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0065        17      18      66 ..     552     600 ..     548     621 .. 0.81
   2 !   18.8   0.5   4.1e-07    0.0011     195     251 ..     629     686 ..     626     689 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0065
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEE CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGali 66 
                  +++++ai+ ++ +gi v   TG ++++++++ + lg+++   a+ G   
   CTQ26941.1 552 PEAIDAIHACQTAGIRVKMITGDHPQTAMSIGQMLGITNSSQAMTGYQL 600
                  6889********************************9976666666655 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 4.1e-07
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEET.TS-HHHHHHSSEEE--GGGTHH CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmg.naseevkkaAdyvtksnnedGV 251
                  l+k l+ + e v   GDg ND + L +a++g+Amg  ++e  k+aAd+v ++ n   +
   CTQ26941.1 629 LVKALQDNGEVVGMTGDGVNDAPALRQADVGIAMGiKGTEVTKEAADMVLTDDNFATI 686
                  667777777778889********************678888999****9998886655 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.47   1.2e+03      54     102 ..      29      75 ..      16     118 .. 0.72
   2 ?   -2.7   0.0       2.5   6.5e+03     116     160 ..     396     436 ..     394     446 .. 0.61
   3 !   14.4   0.0   1.5e-05     0.038      86     188 .]     547     654 ..     470     654 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.47
         HAD  54 laelleallagls.eelaaelerfvaevirpklldpgalellaahraaGd 102
                 + ++  +  agls ++ a++l+  +  +  +k  +pg+l++la   + +d
  CTQ26941.1  29 VLAQTKSQAAGLSsADAAERLNTCGPNALPEKKGKPGWLRFLA---HFND 75 
                 556667778999977777777777744444445889******9...3333 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.5
         HAD 116 epllaelgadevlatelevdd.....rltgelglegkpvrgegkvaalre 160
                 e +l+  +    l++     d     +  g +g+ g+p+ g+ kv a ++
  CTQ26941.1 396 ETWLRTID----LCN-----DsqltqDERGLWGITGGPTEGALKVLAAKA 436
                 56666666....666.....221222344447788889999888877776 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.5e-05
         HAD  86 ldp...galellaahraaGdrvvvvSgglrplvepllaelg....adevlatelevdd..rltgelglegkpvrg..egkvaalrewlaaegegidlee 173
                 +dp   +a ++++a++ aG+rv +++g + + +  + + lg    +++  + +le+ d   l + +  ++ + r   e+k++ +++ l+++g      e
  CTQ26941.1 547 MDPprpEAIDAIHACQTAGIRVKMITGDHPQTAMSIGQMLGitnsSQAMTGYQLEHMDdaALAKAAVEYDIFARTspEHKLRLVKA-LQDNG------E 638
                 444444***********************************666666666667777777655555444444444455666666666.33333......3 PP

         HAD 174 vvay.GDspsDlpllr 188
                 vv   GD+++D p+lr
  CTQ26941.1 639 VVGMtGDGVNDAPALR 654
                 77777*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 6056.39
//
Query:       CTQ26942.1  [L=359]
Description: putative secretion protein HlyD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-16   59.4   1.9    5.9e-10   38.7   1.3    2.3  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    1.8e-10   40.5   0.2    1.8e-10   40.5   0.2    4.0  4  Biotin_lipoyl_2  Biotin-lipoyl like
    1.1e-09   38.9   0.2     0.0022   18.7   0.0    3.5  3  HlyD_3           HlyD family secretion protein
  ------ inclusion threshold ------
      0.041   13.7  11.3      0.072   12.9  11.3    1.3  1  OEP              Outer membrane efflux protein
      0.097   12.5   0.0       0.47   10.3   0.0    2.1  2  Biotin_lipoyl    Biotin-requiring enzyme
       0.27   11.3   5.8       0.44   10.6   5.8    1.3  1  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
        1.5    9.1   7.6        2.5    8.3   6.0    2.2  2  Plasmid_RAQPRD   Plasmid protein of unknown function (Plasmid


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.3e-07    0.0006     105     142 ..      51      88 ..      38      91 .. 0.89
   2 !   38.7   1.3   2.3e-13   5.9e-10      62     211 ..     107     273 ..      88     276 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.3e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 105 vqktvtvkapisGvVteknvreGqyvqpgdtlftiadl 142
                 + + v+++a+++Gv+++++ ++Gqyv++gd lft+ d 
  CTQ26942.1  51 AIRAVDIRARTEGVIVQRHFQDGQYVTEGDLLFTLDDA 88 
                 567899****************************9986 PP

  == domain 2  score: 38.7 bits;  conditional E-value: 2.3e-13
                 XXXXXXX.........XXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXX CS
    HlyD_D23  62 eyllalk.........akkklkkke.lleaarerLrllgvseeqiaelektgkvqktvtvkapisGvVteknvreGqyvqpgd.tlftiadlstVWvea 149
                  + + ++         +++++++++  ++++++   +  v++++ a++e+++ v +++ + ap++G V + +   G  v+ ++ +l+ i +l+ V v +
  CTQ26942.1 107 SLRQSQQlltryerliNNHSISRNDvDTARMQRDVAAAAVQQAK-ARVEAQQIVLSYTRIAAPVTGRVGHSAFHVGTLVNSSSgVLVDIVQLDPVRVSF 204
                 33333334444444443333333334666666667777777776.899*******************************87662699************ PP

                 XXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 150 evyeqqlalvkvgqkvevtv........ealpgktfeGkvdyiyptvdpetRtvkvRieldNpdgkLkpg 211
                 ++ e+ +   k+gq+++++           ++gk+ +G ++ i+  +d+ t +v vR+e++Np+++L pg
  CTQ26942.1 205 ALDEAAF-FSKTGQHADIHAlkqawlaqIEVDGKRRDGVLTSIDNRIDARTGSVAVRAEFANPQHRLLPG 273
                 9998754.346666666654111111115689***********************************998 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.2     7e-14   1.8e-10       3      50 .]      55     102 ..      44     102 .. 0.96
   2 ?   -1.6   1.7      0.99   2.5e+03      40      49 ..     144     153 ..     138     156 .. 0.68
   3 ?    1.3   0.0      0.12   3.2e+02       4      13 ..     164     173 ..     159     185 .. 0.82
   4 ?   -1.4   0.0      0.81   2.1e+03      30      45 ..     194     209 ..     193     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 7e-14
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50 
                      v I a++ G+++q + +dGq+V +Gd+L++lD+ + ++ala a+a l+
       CTQ26942.1  55 VDIRARTEGVIVQRHFQDGQYVTEGDLLFTLDDAQPRAALALAQAELK 102
                      89*******************************************986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.99
  Biotin_lipoyl_2  40 lalaqaeaql 49 
                      +a++qa+a +
       CTQ26942.1 144 AAVQQAKARV 153
                      7888888764 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.12
  Biotin_lipoyl_2   4 sIaapvsGrV 13 
                       Iaapv GrV
       CTQ26942.1 164 RIAAPVTGRV 173
                      7********9 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.81
  Biotin_lipoyl_2  30 LaelDsralqlalaqa 45 
                      +++lD+ +   al+ a
       CTQ26942.1 194 IVQLDPVRVSFALDEA 209
                      899****999998865 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.2   3.1e+03      58      77 ..      33      53 ..      20      55 .. 0.74
   2 !   15.8   0.0   6.7e-06     0.017       2      47 ..      57     101 ..      56     118 .. 0.75
   3 !   18.7   0.0   8.6e-07    0.0022       2     106 .]     165     273 ..     164     273 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.2
      HlyD_3 58 tlkld.qgsdytlkgkieris 77
                t++l     +++++g++e i 
  CTQ26942.1 33 TVELApHAEERAIPGRVEAIR 53
                566664566779999999986 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 6.7e-06
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiip..pdtllveakvpaadl 47 
                 +rA   Gv+v+ + + g++v++gd l+++ +  p    + +++++a+l
  CTQ26942.1  57 IRARTEGVIVQRHFQDGQYVTEGDLLFTLDDaqP---RAALALAQAEL 101
                 89**************************997442...33333333333 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 8.6e-07
      HlyD_3   2 lrApvdGvvvelnveegevvq.agdelleiippdtllveakvpaadlgsikkkgqkvtlkld......qgsdytl.......kgkierisptvdaktga 86 
                 + Apv+G+v      +g  v+ +  +l+ i+  d + v +++++a+  s  k+gq +++++       q     +       +g +++i+  +da+tg 
  CTQ26942.1 165 IAAPVTGRVGHSAFHVGTLVNsSSGVLVDIVQLDPVRVSFALDEAAFFS--KTGQHADIHALkqawlaQ-----IevdgkrrDGVLTSIDNRIDARTGS 256
                 78*******99888999999857777999**************999999..599999999986433331.....23344444***************** PP

      HlyD_3  87 ykvevslenpekksiplkpG 106
                 + v++++ np   + +l+pG
  CTQ26942.1 257 VAVRAEFANP---QHRLLPG 273
                 **********...8888887 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  11.3   2.8e-05     0.072     116     184 ..      93     161 ..      85     163 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.8e-05
         OEP 116 qlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLe 184
                  l la+++l+ ae++l++++++l+++e++ ++  is  dv++a+ + + a a+ ++a++ +++++  L+
  CTQ26942.1  93 ALALAQAELKSAEASLRQSQQLLTRYERLINNHSISRNDVDTARMQRDVAAAAVQQAKARVEAQQIVLS 161
                 5789*********************************99********************9999987666 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00018      0.47      43      73 .]      55      85 ..      53      85 .. 0.93
   2 ?   -1.7   0.0         1   2.6e+03      45      66 ..     165     186 ..     162     194 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
                   EEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 43 meieapkaGvvkeilvkeGdtvevgdllaki 73
                   ++i a+ +Gv+++ + ++G+ v++gdll+++
     CTQ26942.1 55 VDIRARTEGVIVQRHFQDGQYVTEGDLLFTL 85
                   6899************************986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
                    EEBSSSEEEEEESSTTTEEE-T CS
  Biotin_lipoyl  45 ieapkaGvvkeilvkeGdtvev 66 
                    i ap++G+v      +G+ v++
     CTQ26942.1 165 IAAPVTGRVGHSAFHVGTLVNS 186
                    6777777776666666665554 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.8   0.00017      0.44      20      86 ..      90     159 ..      83     165 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
  TPR_MLP1_2  20 aeaklqklqedlekqaeiakeaqq...kYerelvkhaedvkelqalreelnelkaeiaelkaeaesakae 86 
                  +a+l+ +q +l++ ++++++ qq   +Yer +++h+   +++ ++r + + + a ++++ka++e+ +  
  CTQ26942.1  90 PRAALALAQAELKSAEASLRQSQQlltRYERLINNHSISRNDVDTARMQRDVAAAAVQQAKARVEAQQIV 159
                 5678889999999999999999987779************************************998765 PP

>> Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_RAQPRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   6.0     0.001       2.5       4      50 ..      89     142 ..      86     148 .. 0.64
   2 ?    1.1   0.4      0.19   4.8e+02      19      47 ..     142     167 ..     129     171 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.001
  Plasmid_RAQPRD   4 aEreeLakllkqLdqlqalveraeaqakqe.......ekaRvhfdYdrlrrDle 50 
                     + r++La ++ +L++++a+++++++   +        + +R  +d +r++rD+ 
      CTQ26942.1  89 QPRAALALAQAELKSAEASLRQSQQLLTRYerlinnhSISRNDVDTARMQRDVA 142
                     5566666666666666666666555555443333322667************97 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.19
  Plasmid_RAQPRD  19 lqalveraeaqakqe..ekaRvhfdYdrlrr 47 
                     + a v++a+     +  e++ + + Y+r+++
      CTQ26942.1 142 AAAAVQQAK-----ArvEAQQIVLSYTRIAA 167
                     223333333.....33444578888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2585.64
//
Query:       CTQ26943.1  [L=1037]
Description: Efflux pump membrane transporter BepG [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1051.7  19.4          0 1051.6  19.4    1.0  1  ACR_tran   AcrB/AcrD/AcrF family
    7.2e-16   58.0  34.5    3.5e-10   39.3  18.4    3.7  4  MMPL       MMPL family
  ------ inclusion threshold ------
      0.091   12.6   0.4       0.41   10.4   0.1    2.2  2  MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalli
        1.3    8.4  32.7        0.1   12.0  16.9    2.3  2  SecD_SecF  Protein export membrane protein
        1.4    6.9  14.6        2.9    5.9  14.6    1.5  1  Patched    Patched family


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1051.6  19.4         0         0       1    1021 []       1    1020 [.       1    1020 [. 0.99

  Alignments for each domain:
  == domain 1  score: 1051.6 bits;  conditional E-value: 0
                  -HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEE.TTSEEEEEEEESTT CS
    ACR_tran    1 iikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqS.seglssitltFedg 96  
                  ++ ffi+rp fa+v+al+++++G++s++ +Pv+++P i+pp v+vs+s pGas+  v++++++plE +lng+d + y++S+S  eg+ ++++tF  g
  CTQ26943.1    1 MLTFFIRRPRFAMVIALLLTFVGAVSLKLIPVEQYPAITPPVVNVSASWPGASASDVAEAIAAPLETQLNGVDHMLYMESTSsDEGTYRLSITFAAG 97  
                  789*******************************************************************************999************ PP

                  S-HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHH CS
    ACR_tran   97 tdidiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkl 193 
                  td d A+ +vqnr+++a  +LP evq++g+++ k +s+ ++ + + s+ g+l++  ++++a+t++++ L+r++GVg+vq++G++++++riwl p+++
  CTQ26943.1   98 TDADLAAIDVQNRVAQALAQLPAEVQQNGVQVRKRASNLLMGVSLYSPLGTLSPLFVSNYASTQVREALARLPGVGEVQMFGARDYSMRIWLRPDRM 194 
                  ************************************************************************************************* PP

                  HCTT--HHHHHHHHHHHSSB-EEEEE......TT-SB-EEEEESB---SHHHHHTSEEE.ETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEE CS
    ACR_tran  194 aklgltltdvvsalkeqnvnvaaGql......egqeeelliraqgqlqsaediekiivk.nqdgskvrlrDvAkVelgaeeerlaatfngkpavlle 283 
                  ++l++t +dv +al+eqnv+ aaGq+      +gq+++l+i+  g+l++a+ +++ii++  ++g+ vrl DvA++elga+ ++  a++ngk  + l+
  CTQ26943.1  195 NALNITTDDVAQALREQNVQGAAGQVgtppvfNGQQQTLTINGLGRLNEAASFGEIILRrGAQGQLVRLADVATIELGARSYSSGAQLNGKASAYLG 291 
                  ***********************************************************9************************************* PP

                  EEEETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ACR_tran  284 vkklpganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalg 380 
                  ++  p ana++va av+++l++L++ +P+++  +v +d+t+fv a+i+e+  +L + ++ vv+vv lFLq++ratli+++a+P+sl+gtfavl++lg
  CTQ26943.1  292 IYPTPTANALQVASAVRAELNRLHTRFPADLTWEVKFDTTRFVAATIKEIGVSLALTLLAVVVVVSLFLQSWRATLIVVLAIPVSLIGTFAVLYLLG 388 
                  ************************************************************************************************* PP

                  --BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  381 fslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlv 477 
                  +s+N+l+Lf++ lA  +vvDdAiVvvEn+e k++e g+++l+a++++ ++i+g+++a++lvllavf+P+ +l G++G+l+rqfa+t++ a++ls lv
  CTQ26943.1  389 YSANTLSLFAIILALTMVVDDAIVVVENVETKMAE-GLDRLQATAQALRQIAGPVIATTLVLLAVFVPVTLLPGIVGELYRQFAVTLSTAVALSSLV 484 
                  ***********************************.************************************************************* PP

                  HHCCHHHHHHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB-HH CS
    ACR_tran  478 altltPalcallLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgvsle 574 
                  altltPalcallL++r ++ + +++r+fnrl++ +  +Y++l+ ++ r+++++l++ + + +l ++ f+++pk flP+ed+g+l++svqlp+++sle
  CTQ26943.1  485 ALTLTPALCALLLRPRPARPA-AVWRAFNRLLDGTRDGYGRLVGWMNRRPWLALAATVAAGALVAFSFTSMPKGFLPQEDQGYLFASVQLPEAASLE 580 
                  ******************998.8************************************************************************** PP

                  HHHHHHHHHHHHHHTTTTEEEEEEEECECS.SE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSSSCEE CS
    ACR_tran  575 qtqkvlkqvekilkekpevesvfavtGfae.sgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletlsgvr 670 
                  +t++v++q +k l ++p+ve+v+ v Gf++ +g t+  n + + ++Lk++++r       +a+++ ++++l ++p+a ++ +ap+ l +l+++sg++
  CTQ26943.1  581 RTEAVMAQARKLLMANPAVEDVIQVSGFNIlNG-TSASNGGFISVMLKDWHQR----PPLDAVMADIQRQLLSLPEATIMTFAPPTLPGLGNASGFD 672 
                  ******************************555.9999*************99....6789************************************ PP

                  EEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE-GG CS
    ACR_tran  671 selqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvrleed 767 
                  + +   ++g++  +L+++++++l+ ++++p+ls+v++++++++pql++++dr++aa l v +++i++ l+ta+gg+ ++df +++r+++vv++ e +
  CTQ26943.1  673 LRILA-QAGQSSAELEQVTREILQLANQHPQLSRVFTTWSSNVPQLTLTVDRDRAALLDVPVAQIFSSLQTAFGGTRAGDFSRNNRVYHVVMQNEMQ 768 
                  ****9.******************************************************************************************* PP

                  GSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHHHHCHH CS
    ACR_tran  768 lrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqeqeasnsl 864 
                   r+  e++++l+vr+ +g+ v+ls++++i+ + g++ i+++n+++sv +sg++aeg+s+ +a++a+e+i ++ +lp+g+++ w+g + qeq+++n++
  CTQ26943.1  769 WRERAEQISELYVRSRDGERVRLSNLVTITPTVGAPFIQQYNQFPSVSVSGSAAEGVSSRTAMAAMEQILQA-HLPSGYDYAWSGISWQEQQTGNQA 864 
                  ************************************************************************.************************ PP

                  HHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHH CS
    ACR_tran  865 lilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaileaake 961 
                  +++v +a+ + +l L a+yes+  p +++l+v +a+ Gall l+ +g +++v++q+Gl+lli la+kNail+vefa++ re eg+s+ +a+ e+a +
  CTQ26943.1  865 VWIVLAAVAMAWLFLVAQYESWTLPASVMLSVLFAIGGALLWLWTAGYANDVYVQIGLVLLIALAAKNAILIVEFARSRRE-EGLSIVDAAREGATR 960 
                  ******************************************************************************999.*************** PP

                  CHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  962 RLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlva 1021
                  R+r+++MTa+++i+G++P++l+tgaG+++++ +g++v++G++++t+ ++l++P lYvl++
  CTQ26943.1  961 RFRAVMMTAVSFIIGIMPMMLATGAGAQSRRIIGTTVFSGMLVATMVGILFIPSLYVLFQ 1020
                  *********************************************************985 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.3     0.036   1.3e+02      76     123 ..      76     120 ..      39     131 .. 0.61
   2 !   39.3  18.4   9.7e-14   3.5e-10     140     321 ..     336     510 ..     283     532 .. 0.83
   3 ?   -5.0   2.2         3   1.1e+04     250     265 ..     539     554 ..     536     555 .. 0.67
   4 !   33.8   8.1   4.6e-12   1.7e-08      76     313 ..     801    1031 ..     681    1036 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.036
        MMPL  76 vaaafvSkDgkaaralvtlegdp.gsteadesvaairaaveearplegl 123
                 +    +S+D+ + r+ +t+++ + ++ +a++  +++++a+++++    +
  CTQ26943.1  76 LYMESTSSDEGTYRLSITFAAGTdADLAAIDVQNRVAQALAQLP----A 120
                 4556789999999*****99433033334444455555555555....3 PP

  == domain 2  score: 39.3 bits;  conditional E-value: 9.7e-14
        MMPL 140 asdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedree 238
                 a+ +++++  ++tl+ ++v+  + ++S  a l+++l + vsl+ +++++++l   ++ +ls f++ l+        +D a+ +v     ++a+g dr +
  CTQ26943.1 336 ATIKEIGVSLALTLLAVVVVVSLFLQSWRATLIVVLAIPVSLIGTFAVLYLL-GYSANTLSLFAIILALT----MVVDDAIVVVENVETKMAEGLDRLQ 429
                 66678899999************************************95544.44466666666655555....557********************** PP

        MMPL 239 aviravastgkvvtaaGltvaiamlg...LvvarlpvlaqvGvaialGvlvdvlivlTllPAllvllGraalakprrkrkkrwWrr 321
                 a ++a++++++ v+a +l++ + ++    L  +  +  +q++v+++++v+++ l++lTl+PAl++ll r ++     +r  ++Wr 
  CTQ26943.1 430 ATAQALRQIAGPVIATTLVLLAVFVPvtlLPGIVGELYRQFAVTLSTAVALSSLVALTLTPALCALLLRPRP-----ARPAAVWRA 510
                 *******************9999998554566778999****************************988843.....344566654 PP

  == domain 3  score: -5.0 bits;  conditional E-value: 3
        MMPL 250 vvtaaGltvaiamlgL 265
                 + +aaG+ va+++ ++
  CTQ26943.1 539 ATVAAGALVAFSFTSM 554
                 5577777777777766 PP

  == domain 4  score: 33.8 bits;  conditional E-value: 4.6e-12
        MMPL   76 vaaafvSkDgkaaralvtlegdpgsteadesvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaall 172 
                  v a f+ + ++     v++ g++++  + +++ a ++ + +a+ ++g +   +G +   +     + +++  i++++++++ + L+  y S   ++ 
  CTQ26943.1  801 VGAPFIQQYNQFPS--VSVSGSAAEGVSSRTAMAAMEQILQAHLPSGYDYAWSGISWQEQQ----TGNQAVWIVLAAVAMAWLFLVAQYESWTLPA- 890 
                  55555555555543..444455555555555555555555555588888888885555444....7788999999****************99986. PP

        MMPL  173 plltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvar 269 
                     +v++s+l a+g +l++  ++g   +++ +++  vllia ++  a+l+v   r ++++g +  +a+ +  ++  ++v++ ++ ++i ++ +++a+
  CTQ26943.1  891 ---SVMLSVLFAIGGALLWLWTAG-YANDVYVQIGLVLLIALAAKNAILIVEFARSRREEGLSIVDAAREGATRRFRAVMMTAVSFIIGIMPMMLAT 983 
                  ...666777777777666665554.457888999*******************************************************99998876 PP

        MMPL  270 ...lpvlaqvGvaialGvlvdvlivlTllPAllvllGraa.lakprrk 313 
                      ++ + +G+++  G+lv++++ + ++P+l vl+ r + +a+ r k
  CTQ26943.1  984 gagAQSRRIIGTTVFSGMLVATMVGILFIPSLYVLFQRMReWAHRRGK 1031
                  211455556*****************************9878765544 PP

>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00011      0.41      93     137 ..     398     442 ..     390     451 .. 0.89
   2 ?   -2.1   0.0      0.81   2.9e+03      30      48 ..     681     699 ..     673     723 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
                 HHH..............HHHHHHHHHHHHHHHHHCCHHHHHHHHH CS
   MCPsignal  93 aliieiqkeindsvesleetrqrveegselveetgealkeiveav 137
                 a+i +++  ++d++ ++e+++++++eg++  + t++al++i+  v
  CTQ26943.1 398 AIILALTMVVDDAIVVVENVETKMAEGLDRLQATAQALRQIAGPV 442
                 5788899999*******************************9866 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.81
                 HHHHHHHHHHHHHHHHHHH CS
   MCPsignal  30 ksskeisdiieVideiadQ 48 
                 +ss+e++++++ i ++a+Q
  CTQ26943.1 681 QSSAELEQVTREILQLANQ 699
                 3344444444444443333 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  16.9   2.8e-05       0.1      30     173 ..     338     483 ..     324     498 .. 0.84
   2 ?    1.9   7.7     0.035   1.2e+02      28     183 ..     859    1016 ..     847    1022 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHHHHHHHHHHHHHT-.HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHH CS
   SecD_SecF  30 aekavlallialvliliyvalrFe.wrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinls 127
                 ++++ ++l+++l++++++v+l  + wr  l +++a+   +i t +vl llg   +  ++ a++  +   v+d +vv + v+ ++ +    +  +++ ++
  CTQ26943.1 338 IKEIGVSLALTLLAVVVVVSLFLQsWRATLIVVLAIPVSLIGTFAVLYLLGYSANTLSLFAIILALTMVVDDAIVVVENVETKMAE--GLDRLQATAQA 434
                 56677889999999999999877637777888888999*******************************************99887..6677889999* PP

                 HHHHHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTT CS
   SecD_SecF 128 lnqtLtrtiltslttllvvvallllgg...dslkdfalallvGlivgty 173
                 l q     i+t+l++l v v + ll+g   +  ++fa++l  ++++  +
  CTQ26943.1 435 LRQIAGPVIATTLVLLAVFVPVTLLPGivgELYRQFAVTLSTAVALSSL 483
                 **************99999999998876768889999999888876554 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.035
                  HHHHHHHHHHHHHHHHHHHHHHHHT-.HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHH CS
   SecD_SecF   28 elaekavlallialvliliyvalrFe.wrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkei 123 
                  +  ++av+ +l+a+++  ++++ ++e w ++ ++++++++ +  ++  l   g   d+ + ++l  +i    ++ +++ +  r +  +++  ++ ++
  CTQ26943.1  859 QTGNQAVWIVLAAVAMAWLFLVAQYEsWTLPASVMLSVLFAIGGALLWLWTAGYANDVYVQIGLVLLIALAAKNAILIVEFARSR--REEGLSIVDA 953 
                  55689***********999999999868999999999**99999999999999***************************99998..556999**** PP

                  HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHHHHH CS
   SecD_SecF  124 inlslnqtLtrtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifiaspll 183 
                  + ++ +  +   ++t ++ ++ ++ ++l +g   +s + + ++++ G++v t+  i++   l 
  CTQ26943.1  954 AREGATRRFRAVMMTAVSFIIGIMPMMLATGagaQSRRIIGTTVFSGMLVATMVGILFIPSLY 1016
                  *********999999999999999999987766677777888999999998888877766655 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  14.6    0.0008       2.9     662     809 ..     344     496 ..     326     498 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0008
     Patched 662 nivlallcmfvvallfipelitvlvitlsivsidigviGflslWgvdLDpismitiimsiGfsvdlsaHiayafvrsekd...dakeRvvealealgwP 757
                 +++l+ll ++vv  lf+++  + l+++l+i    ig++ +l l g     +s+ +ii++    vd +  +  + v+++     d  +  ++al +++ P
  CTQ26943.1 344 SLALTLLAVVVVVSLFLQSWRATLIVVLAIPVSLIGTFAVLYLLGYSANTLSLFAIILALTMVVDDAI-VVVENVETKMAeglDRLQATAQALRQIAGP 441
                 6788999999********************9999*******************************765.55566666655255666666789******* PP

     Patched 758 vvqgalSTilgvlvLlfvds...ymvqvFfktvvLvvvigllHgLlilPillslf 809
                 v+   l  ++  + +++ +     + + F+ t++  v+++ l +L + P l +l+
  CTQ26943.1 442 VIATTLVLLAVFVPVTLLPGivgELYRQFAVTLSTAVALSSLVALTLTPALCALL 496
                 **99987665555566666511155677999******************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1037 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1185  (0.066094); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 6696.05
//
Query:       CTQ26944.1  [L=239]
Description: hypothetical protein CH1034_140089 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-21   76.8   0.0    2.9e-21   76.4   0.0    1.1  1  NAGPA     Phosphodiester glycosidase


Domain annotation for each model (and alignments):
>> NAGPA  Phosphodiester glycosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   1.6e-25   2.9e-21       3     143 ..      71     216 ..      69     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.6e-25
       NAGPA   3 avaavnGgffdpksggplglvisdgkilkkangeeaagalaitkdgklvvslqelde.........anvkeavgagplLvkngkivktsadggsgrapR 92 
                 +++a+nGg++d+    plgl+i+dgk l++ n++++ g++ i+++g++ v+  +++            ++ av++gp+L++ng+i  + +   s+r+ R
  CTQ26944.1  71 VQMAMNGGIYDKAYA-PLGLYIEDGKRLTPVNRSAGGGNFFIRPGGVFLVENGRAKIvplpaykpsPAIRYAVQSGPMLIENGVINWRLKPSASSRKLR 168
                 799**********98.**************99******************55555555667788977788889*************989999889**** PP

       NAGPA  93 taiGvtadgtllllvvdgrqsaGatlkelaellkk.lGavnAlnLDGGgStt 143
                 + +G++++g+++++  d    +  +++++a   ++ lG+++ l+LDG  S  
  CTQ26944.1 169 NGVGIDKQGRVVFMLSD----RETNFYDFACYAQSkLGVRQMLYLDGTLSKM 216
                 *****************....59********77767**********987754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1710.09
//
Query:       CTQ26945.1  [L=371]
Description: gamma-glutamyl:cysteine ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-68  230.9   0.0    2.4e-68  230.6   0.0    1.1  1  GCS2            Glutamate-cysteine ligase family 2(GCS2)
  ------ inclusion threshold ------
      0.059   12.0   0.0      0.097   11.3   0.0    1.3  1  Glu_cys_ligase  Glutamate-cysteine ligase


Domain annotation for each model (and alignments):
>> GCS2  Glutamate-cysteine ligase family 2(GCS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.6   0.0   2.7e-72   2.4e-68       1     291 []      14     292 ..      14     292 .. 0.99

  Alignments for each domain:
  == domain 1  score: 230.6 bits;  conditional E-value: 2.7e-72
                 EEEEEEEEEEETTTTEE-S-HHHHHCCCTTT-S.SSEEEE-SSTTEEEEE--SBSSHHHHHHHHHHHHHHHHHHHHHTT-EEE--SB-SS--------- CS
        GCS2   1 lgvEeeflvvdlatgdlrgwseiledeaiiglseggsvvkelpegqvElstapleslaeaaeeisadleelrsvadelGlellglGthPfalrsedevt 99 
                 lg+E e++vv++ ++dl+++ + l++++  +l+  g+++++++e+++E++t ++++++ a+ ++sa +++++++a  ++l+++g G hPf  ++++++ 
  CTQ26945.1  14 LGIELELQVVNPPGYDLSQDASTLIADVQHQLT-VGEAKHDITESMLEIATGVCRDISHAQIQLSAIQQAVQRAALRHHLQICGGGSHPFHAWQRQQIS 111
                 69****************9999***9***9999.***************************************************************** PP

                 ------THHHHHGG..G.G-S--B-EEEEEEE-SSHHHHH.HHHHHHHTTHHHHHHHH--B-EETTEE-S-SB-GGGCCTTSTT-CS----SSHHH.HH CS
        GCS2 100 pkaryrrmleymdrvGvlgrqmmvaglhvqvnidssseedVevlrlvrallPvllAlsAnSPfleGrdtgyaStRariftqtpqagelplafedgaafe 198
                 +++ry ++ e +++   l++q++v+g+hv+v++ s+++++ ++l+ +++++P+++Al A+SP+ + +d+++a +R ++f+  p++g++p++ +++ +f+
  CTQ26945.1 112 DNPRYVKTVEHFGY---LAQQATVFGQHVHVGCQSGDDAI-YLLHGLSRFVPHFIALNAASPWFDSTDSRFACSRLNRFSSYPDNGPMPWVADWQ-GFR 205
                 **************...59*********************.*****************************************************6.7** PP

                 HHHHHHTTSTT-SSGG.G--BSEEEETTTT.EEEEEEEE--...SSHHHHHHHHHHHHHHHHHHHHH------GGGGTT.HHHHHHHHHHHGG CS
        GCS2 199 ryaryaldvpvidvrrfrlwldirpsslpgttlelrihdttlfPevrlrallearlldaqpadrldalpaavlvallddeaeenawdavrsgl 291
                 r +r+++++++id+++ +l++dirps+ +g t+e+r++dt+   +++++a+  a+ +++ +++ l+++p++++  ++++ + +n+++a+r+gl
  CTQ26945.1 206 RLFRQLSYTSMIDSMK-DLHWDIRPSPQFG-TVEVRVMDTP---LTLAQAIHIAGFIQTLACWLLTERPFKHQPDDYLL-YPFNRYQACRYGL 292
                 ****************.*************.**********...8**********************************.***********96 PP

>> Glu_cys_ligase  Glutamate-cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.1e-05     0.097      18      87 ..      14      86 ..       8     110 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.1e-05
                    EEEEEEEEEE-TTS.SB--S-S-..GGG--TTT-SSEEE-SBTTEEEEE---BS-HHHHHHHHHHHHHHHHTS CS
  Glu_cys_ligase 18 rGiErEslRvteeg.klaqtphp..kalGsalthksittDfsEallEfiTpveksveelleeLedlhrfvakk 87
                     GiE E + v++ g +l+q+     + + ++lt  + + D +E++lE+ T v ++++++  +L+ +++ v++ 
      CTQ26945.1 14 LGIELELQVVNPPGyDLSQDASTliADVQHQLTVGEAKHDITESMLEIATGVCRDISHAQIQLSAIQQAVQRA 86
                    688888888888774466655431145667788888999*****************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2680.36
//
Query:       CTQ26946.1  [L=555]
Description: Extracellular solute-binding family protein 5 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-68  229.9   5.5      6e-68  229.5   5.5    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.32   10.7   0.0    1.6  1  HTH_33     Winged helix-turn helix


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.5   5.5   6.7e-72     6e-68       2     358 ..      83     470 ..      82     487 .. 0.83

  Alignments for each domain:
  == domain 1  score: 229.5 bits;  conditional E-value: 6.7e-72
                 EEESSEEEEEEEETTTT.EEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC....TCTEEEEEEEETTEEEEEESSETTTTTTHCHH CS
   SBP_bac_5   2 vvpaLAeswwevsdDgk.tytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee....dqdikkveavddytvrftlkkpnalfltllaa 95 
                 +vp+LA++ w +++ ++  ++f+LR+gvkF+DGt+++A+++v++ +++l++  ++++   + +      + +++e++dd+tv +t+++p+al+++ +++
  CTQ26946.1  83 LVPGLATE-WHIDPQNTsRWIFTLRPGVKFHDGTEVNADAIVWNVDKVLNKAAPQYAPGQIGNtlsrMPTLTGAEKIDDHTVALTTSEPDALLPYNITN 180
                 79******.6877766526**************************************999999****************************99999999 PP

                 HHHHHGC..............CHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTT.SCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEE CS
   SBP_bac_5  96 vpasiak..............kaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgg.gkpkldriefkvipdsdaraaalqsGeiddva 179
                 + + +++              ++a+ ++++++ ++++ vg+GP+kl++ +p q+++l +npdYw++ + p++d++++   p+++ar aal+s+++d+++
  CTQ26946.1 181 LFIVSPTawqkqydavpasvgDSAARSKQAWTAFAAHAVGSGPFKLEKLVPRQQLILDKNPDYWNKdRIPRVDKVVLIPLPEANARTAALLSKQVDWIE 279
                 99988889999999*******8888999999*********************************666999*************************8887 PP

                 STTCCTHCHHHHHTTEEEEEEEEEEEEEEEEETTT.STGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHH CS
   SBP_bac_5 180 epppsdieqlkeakglkvlyespgggvtylafNtk.kppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkk 277
                  p p+ i+q+k  +g  + y  +++  + ++f ++   p +d+rvR+A ++ ++r e+   + +gy t a+++    sp++ +++ +   +ydp++A++
  CTQ26946.1 280 APAPDAIDQIKS-QGFHL-YANTQPHLWPWQFSFEkGSPWQDIRVRKAANLCLNRAELKSYL-GGYMTEATGVYEADSPWHGKPTFQ--IKYDPDAARQ 373
                 777777777755.55555.5666666666666666447*******************97776.**********88888888554433..379******* PP

                 HHHHTT-BCSSTSCEETCEEEEEEEEETTSHHHH.HHHHHHHHHHHHTTEEEEEEEECHH....................HHHHHHHHCTTESEEEEEE CS
   SBP_bac_5 278 lLkeaGykdgdggglrekklkltlllasgspaek.aiaeliqqqlkkiGikvevktvdwa....................atylervkdgdfdmillgw 355
                 l+ eaGy  ++   +     ++ ++++++++ +  ++ e+iqq+lk   ++v++k+v+w+                     +  ++v+d +f +i ++ 
  CTQ26946.1 374 LMTEAGYSASKPLHV-----TVATSASGSGQMQPlPMNEYIQQSLKSCFFNVDIKVVEWNtlftnwrlgardpsakgidaINVSAAVNDPYFGLIRFST 467
                 **********98765.....355555555666669**********************998888876665555555555553333445555555555544 PP

                 ECT CS
   SBP_bac_5 356 gad 358
                    
  CTQ26946.1 468 AKA 470
                 444 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.6e-05      0.32      17      44 ..     361     388 ..     359     394 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.6e-05
      HTH_33  17 rfgvsysvsgvyrlLkrlGfsyqkPrpr 44 
                 +f+++y +   ++l+ ++G+s  kP ++
  CTQ26946.1 361 TFQIKYDPDAARQLMTEAGYSASKPLHV 388
                 69***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 4004.03
//
Query:       CTQ26947.1  [L=317]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-40  138.9  12.3    1.5e-40  138.9  12.3    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.21   11.3   1.7        0.3   10.9   0.3    1.9  2  MotA_ExbB     MotA/TolQ/ExbB proton channel family
       0.38   10.2   1.9        1.2    8.6   1.9    1.8  1  DUF3169       Protein of unknown function (DUF3169)
        4.6    7.4  10.8       0.19   11.9   2.7    2.6  3  DUF4079       Protein of unknown function (DUF4079)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.7      0.12   5.3e+02      23      44 ..       6      60 ..       2     112 .. 0.58
   2 !  138.9  12.3   3.5e-44   1.5e-40       1     184 [.     113     315 ..     113     316 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.12
  BPD_transp_1 23 liivllslPsfv.laillvlvf................................v 44
                  l+ +ll++P+++ +a++ ++++                                 
    CTQ26947.1  6 LYRILLAIPTMLgVAVICFMLVqiapgdplvsvmppdasealrqtlmqaygfdkP 60
                  5667888888887444444333444666666666666666555555555555552 PP

  == domain 2  score: 138.9 bits;  conditional E-value: 3.5e-44
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.....................vilsilghlilpviillllsaapyvrlirraal 76 
                   g l+G++a+++rn+++d+l ++l+ ++ s+P+++l++llv ++                       +  l+++ lp+++l+++ +++++r +r+++ 
    CTQ26947.1 113 GSLFGFVAGYFRNSVIDRLASVLSVFGVSVPHYWLGMLLVILCsvkfallpatgggpigevgwqWDWAHLQFMLLPALTLSVIPTGIIARTVRSQVA 209
                   679*************************************888*******************987777899************************** PP

  BPD_transp_1  77 rslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvad 173
                   ++l+++++   ra+G+++ +if+ +v++na+p++++ ++l++g+l+gg++l+e+++swpG g+ll +ai ++d+++ + g++++l+++++llnl++d
    CTQ26947.1 210 DILSQEFIVGLRARGLNESRIFV-HVMKNAAPTALAVMGLQVGYLMGGSILVETVFSWPGTGLLLNTAIFQRDLPLLQ-GTIWVLALFFVLLNLLVD 304
                   ********************888.******************************************************.****************** PP

  BPD_transp_1 174 ilqrlldprvr 184
                   ilq+ ldpr++
    CTQ26947.1 305 ILQTTLDPRIK 315
                   *********98 PP

>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.85   3.8e+03      71      97 ..      25      50 ..       9      52 .. 0.53
   2 ?   10.9   0.3   6.6e-05       0.3      83     118 ..      92     127 ..      81     135 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.85
                HHHHHHHHTSSSGGCTHHHHHHHHHHH CS
   MotA_ExbB 71 afqaladagsadlakvapgiaeALiaT 97
                ++ ++a  g++ ++++ p  +eAL  T
  CTQ26947.1 25 MLVQIAP-GDPLVSVMPPDASEALRQT 50
                3334443.3344555556666666666 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6.6e-05
                 GGCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB  83 lakvapgiaeALiaTalGlvvAipavlaynklkrkv 118
                 +++va ++  AL+aTa+G v+  ++ +++ ++++ v
  CTQ26947.1  92 MTAVAYSLRLALLATAIGFVLGSLFGFVAGYFRNSV 127
                 5789999***************99999999998876 PP

>> DUF3169  Protein of unknown function (DUF3169)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.9   0.00027       1.2      11      67 ..     102     156 ..      94     164 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00027
     DUF3169  11 mliggliGgiiGfllgafeaekgleelsaalkelllligskilpllliiavlvviis 67 
                  l++  iG+++G l+g++ +++  + +++ l+++l ++g   +p   + ++lv+++s
  CTQ26947.1 102 ALLATAIGFVLGSLFGFVAGYFRNS-VIDRLASVLSVFGV-SVPHYWLGMLLVILCS 156
                 5666777777777777776665444.78888888888877.6776666555555554 PP

>> DUF4079  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.72   3.2e+03      87     132 ..      17      30 ..      13      37 .. 0.60
   2 ?   11.9   2.7   4.1e-05      0.19      59     105 ..     108     165 ..      64     199 .. 0.77
   3 ?    0.1   0.4      0.19   8.4e+02      17      55 ..     191     252 ..     170     308 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.72
     DUF4079  87 aGlavvvLlalsaalvpeiqkgkstaRtlHialnvlalllfawqai 132
                  G+av++++++++                                 
  CTQ26947.1  17 LGVAVICFMLVQI--------------------------------A 30 
                 4555555555554................................3 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.1e-05
     DUF4079  59 llvvlgaigglvllylrrgk...........lfpssHlyaGlavvvLlalsaalvpei 105
                 + +vlg++ g+v+ y+r++             + ++H++ G+++v+L  ++ al p+ 
  CTQ26947.1 108 IGFVLGSLFGFVAGYFRNSVidrlasvlsvfGVSVPHYWLGMLLVILCSVKFALLPAT 165
                 34566777777777777776677777887777889*******************9986 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.19
     DUF4079  17 lgavaylGwqtrqrrlqsk.......................aerkekipkkvrdeHvklgs 55 
                    v+ +G+ +r+ r+q +                       +  k+ +p  +     ++g 
  CTQ26947.1 191 TLSVIPTGIIARTVRSQVAdilsqefivglrarglnesrifvHVMKNAAPTALAVMGLQVGY 252
                 33346777777777777764444444444444444444444433444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2525.12
//
Query:       CTQ26948.1  [L=297]
Description: Glutathione transport system permease protein GsiD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-18   64.8  15.9      8e-18   64.8  15.9    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne
    6.6e-09   35.6   0.4    6.6e-09   35.6   0.4    3.0  4  OppC_N        N-terminal TM domain of oligopeptide transport 


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.08   7.2e+02     155     172 ..      34      51 ..       9      57 .. 0.72
   2 !   64.8  15.9   8.9e-22     8e-18       1     180 [.     115     290 ..     115     295 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.08
  BPD_transp_1 155 nggvlalviavlllnlva 172
                    ggv+++v+++lll l++
    CTQ26948.1  34 PGGVVVGVVILLLLALAL 51 
                   467777777777776654 PP

  == domain 2  score: 64.8 bits;  conditional E-value: 8.9e-22
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g  +Gi+a+ + ++k++ ++++ ++v++++Ps++lai l       ++lg +i   ++ l+l++ + ++r+  +   +++ +d++ aara Gas  +
    CTQ26948.1 115 GGAIGIIAG-YTGGKTNTVIMRTVDVFYAFPSVLLAIALS------GALGAGIGNaLLSLTLVFVPQVARIAESVTAQVRHMDYIDAARATGASALT 204
                   5679*****.******************************......*********788888888888888889999999****************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis......nggvlalviavlllnlvadilqrlld 180
                   i+r  vl n+l pi+ +    +   +  a+ l+flg    lg +  e+++g +++          ++++  ++++++ +++++il++ l 
    CTQ26948.1 205 IIRVQVLGNVLGPIFVFSTGLISVCMILASGLSFLG----LGVRPPEPEWGLMLNTLRtaiytqPWVAALPGLMIFITSISFNILADRLR 290
                   ************************************....***************887******55555555555555555555555443 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.4   7.4e-13   6.6e-09       2      42 ..      22      63 ..      21      72 .. 0.81
   2 ?   -2.6   1.3      0.61   5.5e+03      19      32 ..     100     113 ..      98     126 .. 0.62
   3 ?   -2.6   0.2      0.65   5.9e+03      24      34 ..     163     173 ..     146     186 .. 0.57
   4 ?   -2.4   1.1      0.54   4.9e+03      16      24 ..     269     277 ..     223     289 .. 0.67

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 7.4e-13
      OppC_N  2 lwqdawrrFkrNklAvvglvilllllliaifaPliaPydp.q 42
                +w+ ++rr++r++  vv  v++llll++a+f+P+++  dp q
  CTQ26948.1 22 YWRGVLRRLLRDPGGVVVGVVILLLLALALFGPWLIVKDPyQ 63
                8**********************************8444432 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.61
      OppC_N  19 glvilllllliaif 32 
                 +l++ ++ +++a+f
  CTQ26948.1 100 SLFMGIVPVVFAFF 113
                 56666666666766 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.65
      OppC_N  24 llllliaifaP 34 
                 +ll l  +f P
  CTQ26948.1 163 ALLSLTLVFVP 173
                 33333334555 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.54
      OppC_N  16 Avvglvill 24 
                 A+ gl i++
  CTQ26948.1 269 ALPGLMIFI 277
                 333555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2412.80
//
Query:       CTQ26949.1  [L=345]
Description: oligopeptide transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-33  113.9   0.0      1e-32  113.5   0.0    1.2  1  ABC_tran         ABC transporter
    1.9e-19   70.0   0.3    3.3e-19   69.1   0.3    1.4  1  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
    1.9e-06   28.4   0.2    3.4e-06   27.6   0.2    1.4  1  AAA_16           AAA ATPase domain
    2.3e-05   24.7   1.0    0.00024   21.4   1.0    2.1  1  AAA_22           AAA domain
    0.00027   20.4   0.2     0.0018   17.7   0.2    1.9  1  SMC_N            RecF/RecN/SMC N terminal domain
    0.00073   19.7   0.1     0.0016   18.6   0.1    1.4  1  DUF87            Helicase HerA, central domain
     0.0012   19.3   0.1      0.027   14.9   0.1    2.2  1  AAA              ATPase family associated with various cellul
     0.0017   18.4   0.2       0.18   11.8   0.1    2.3  2  AAA_5            AAA domain (dynein-related subfamily)
     0.0021   17.7   0.0     0.0021   17.7   0.0    1.2  1  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
     0.0044   17.4   0.0      0.011   16.1   0.0    1.7  1  RNA_helicase     RNA helicase
     0.0052   17.0   0.1      0.026   14.8   0.1    2.0  1  SbcCD_C          Putative exonuclease SbcCD, C subunit
     0.0073   15.9   0.3      0.024   14.2   0.3    1.8  1  AAA_25           AAA domain
  ------ inclusion threshold ------
      0.017   14.8   0.0      0.028   14.1   0.0    1.4  1  PRK              Phosphoribulokinase / Uridine kinase family
      0.022   14.7   0.2       0.17   11.8   0.1    2.1  2  NACHT            NACHT domain
      0.022   14.9   0.0      0.051   13.7   0.0    1.6  1  AAA_33           AAA domain
      0.036   13.8   0.3       0.25   11.1   0.3    2.0  1  AAA_30           AAA domain
      0.064   13.8   0.1       0.18   12.3   0.0    1.8  2  AAA_18           AAA domain
      0.075   12.9   0.2       0.14   12.0   0.2    1.4  1  RsgA_GTPase      RsgA GTPase
       0.09   12.2   0.2        1.2    8.6   0.0    2.1  2  TniB             Bacterial TniB protein
      0.094   12.5   0.0       0.19   11.5   0.0    1.4  1  DEAD             DEAD/DEAH box helicase
        0.1   12.5   0.0        0.2   11.5   0.0    1.4  1  Rad17            Rad17 P-loop domain
       0.12   12.1   0.7       0.24   11.1   0.0    1.8  2  Sigma54_activat  Sigma-54 interaction domain
       0.16   12.0   0.0       0.29   11.2   0.0    1.5  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.0   1.3e-35     1e-32       2     136 ..      39     188 ..      38     189 .. 0.95

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 1.3e-35
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS..--S-TTSBHHHH.............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx..xxxxxxxxxxxx.............xxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqe..pqlfpeltvren.............esde 83 
                 +++s+++ +ge++++vGe+G+GKSt ++ll++ll++++Ge+ +dg+ + +   +l+ +r+++++++q+  ++l+p+lt++e+             e++e
  CTQ26949.1  39 DDISFTVMKGETLGVVGESGCGKSTTARLLMQLLTQDSGELIFDGQGVGSsrLPLKAYRRQVQMVFQDsyASLNPRLTMEESiafgqrvhgvsarEASE 137
                 89******************************************9998887799************************************999888888 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  +  +l+++gl+   ++ +++ p+ LSgGq+qrv +aral+ kp+l++lDE+ 
  CTQ26949.1 138 YARYLLAHVGLEP--ARFADRYPHALSGGQRQRVNIARALAMKPRLVILDEAV 188
                 899*******999..999999******************************96 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.3   4.3e-22   3.3e-19       1      65 []     240     305 ..     240     305 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 4.3e-22
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd.klekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE+gp+++lf+ ++HPYT+aLl+s+p++d+e++     + g++ps+ + ++GC+F++RCp+a++ C
  CTQ26949.1 240 VEIGPAEQLFTASAHPYTRALLSSMPSMDPENRtLTSPLSGDPPSPIAPPSGCRFHTRCPHAKAVC 305
                 8********************************7778899***********************999 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.2   4.3e-09   3.4e-06      18     168 ..      44     216 ..      29     218 .. 0.63

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 4.3e-09
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekd..ggif.lrgkcdqlesaipy...salaqalareellrqlldeaesaeleawrekleeala.avp 109
                 +v +g  e + ++GesG+GKs+ +r l++ l++d  +  + + g+ + + s +p+      +q+ ++ + ++ l+ +++  e  a+ ++ +++ a +  
  CTQ26949.1  44 TVMKG--ETLGVVGESGCGKSTTARLLMQLLTQDsgE--LiFDGQGVGS-SRLPLkayRRQVQMVFQ-DSYASLNPRLTMEESIAFGQRVHGVSArE-- 134
                 45555..56889****************999999531..3244444444.33444332334444433.44444444444445666666666655532.. PP

      AAA_16 110 elagaea..........srllellkrllallsrder..........plvlvlDdlqwade.....aslqllaaLlrlleskpll 168
                  ++  ++           r+++   ++l+  +r +r          p +++lD++  a +     + lqll++L r+le  +++
  CTQ26949.1 135 -ASEYARyllahvglepARFADRYPHALSGGQR-QRvniaralamkPRLVILDEAVSALDksveaQVLQLLQELKRTLELTYVF 216
                 .22222244566677778999999999988888.7789999999999******8884444333348888888888888876665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   1.0   3.1e-07   0.00024      10     119 ..      53     217 ..      46     226 .. 0.65

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3.1e-07
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee.......................................erpevv...fvtlpsstsskdllrellralgl 66 
                 v+GesG+GK+t++r l++ l++++   e                                       e  +++   +v   s  + ++ +r ll  +gl
  CTQ26949.1  53 VVGESGCGKSTTARLLMQLLTQDSG--ElifdgqgvgssrlplkayrrqvqmvfqdsyaslnprltmE-ESIAfgqRVHGVSAREASEYARYLLAHVGL 148
                 89*****************976533..24688888888888888888777777777777776666632.222235555555555666777777777777 PP

      AAA_22  67 elka....erlsseellealeqalrarav.ielliiDEaqh.lr.s.....eealeeLrsllnl....s 119
                 e  +    +++ ++   ++  + +ra a+ ++l+i+DEa   l+ s      ++l+eL++ l+l     
  CTQ26949.1 149 EPARfadrYPHALSGGQRQRVNIARALAMkPRLVILDEAVSaLDkSveaqvLQLLQELKRTLELtyvfI 217
                 66667777444444444333333444444677*******999988455556777777766665444444 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   2.3e-06    0.0018      29     197 ..      53     219 ..      38     236 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.3e-06
                 EEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--......BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
       SMC_N  29 ivGpNGSGKsnlldAilFvLGersakklrseklsdlihk......skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk. 120
                 +vG+ G+GKs     ++ +L ++s          +li+       s+   ++ + +v+++f+++ ++       ++ + +++++     ++ g ++++ 
  CTQ26949.1  53 VVGESGCGKSTTARLLMQLLTQDS---------GELIFDgqgvgsSRLPLKAYRRQVQMVFQDSYAS-------LNPRLTMEESIAFGQRVHGVSAREa 135
                 566666666655555544444322.........3444442221111222223333445554444444.......2222222222223333444444443 PP

                 HHHHH.HHHCTT-STT........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-S CS
                 xxxxx.xxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
       SMC_N 121 kevse.llesagiske........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivisl 197
                 +e+++ ll+++g+++         +LSgG+++ v +a  +A++      l++lDe  +aLD++  ++v +ll+e + +    ++ is+
  CTQ26949.1 136 SEYARyLLAHVGLEPArfadryphALSGGQRQRVNIARALAMKP----RLVILDEAVSALDKSVEAQVLQLLQELKRTleLTYVFISH 219
                 4444325566666666888888889************9999754....499**********************987662244455555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1     2e-06    0.0016      26      62 ..      51      85 ..      41      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2e-06
       DUF87 26 lAilgsTGsGKSntvavLleellekkgatililDpHG 62
                l+++g++G GKS+t+++L++ l   +++  li+D +G
  CTQ26949.1 51 LGVVGESGCGKSTTARLLMQLLT--QDSGELIFDGQG 85
                79*****************9999..567778888665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   3.5e-05     0.027       3      94 ..      53     207 ..      51     231 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.5e-05
                 EESSTTSSHHHHHHHHHHHHTHE...........................EEEEETTTCSSS..................................... CS
         AAA   3 lyGppGtGKTllakavakelgve...........................fleisgsellsk..................................... 37 
                 ++G  G+GK+++a+ +++ l ++                           +                                                
  CTQ26949.1  53 VVGESGCGKSTTARLLMQLLTQDsgelifdgqgvgssrlplkayrrqvqmV----------Fqdsyaslnprltmeesiafgqrvhgvsareaseyary 141
                 68*****************85443333333333333334444333333330..........03344444445555556666666666666666777777 PP

                 ...............STTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHH CS
         AAA  38 ...............yvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteld 94 
                                y  + +   r+ ++ a++ a kp  +++DE+ +   ++        e  v qLl+el+
  CTQ26949.1 142 llahvgleparfadrYPHALSGGQRQRVNIARALAmKPRLVILDEAVSALDKS-------VEAQVLQLLQELK 207
                 77777777777777788888888888888888888888888889888887777.......2333444444444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00023      0.18       4      25 ..      53      75 ..      51      91 .. 0.86
   2 ?    4.5   0.0     0.043        33      56      96 ..     170     210 ..     136     244 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00023
                EE--SSSSHHHHHHHGGGGB.S- CS
       AAA_5  4 LvGppGtgKselaerlaaal.nr 25
                +vG++G+gKs+ a+ l ++l ++
  CTQ26949.1 53 VVGESGCGKSTTARLLMQLLtQD 75
                59*****************9544 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.043
                 .--------.G-SEEEEESGGG--.HHHHHHHHHHHHSSEEE. CS
       AAA_5  56 dsplvraar.egeilvlDEverae.sevlnsLlslleerrlll 96 
                 +  + ra   ++++++lDE   a  ++v + +l+ll e ++ l
  CTQ26949.1 170 N--IARALAmKPRLVILDEAVSALdKSVEAQVLQLLQELKRTL 210
                 2..22333348888888888777769**********9988776 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.8e-06    0.0021       5      50 ..      39      85 ..      35     317 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.8e-06
                 HHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSS.EEEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  ATP-synt_ab  5 lDalfpivqGqrtlipgafgvGktvisqslskqsnsdd.aiiyvgiG 50
                  D  f++++G++++++g++g+Gk++ ++ l++  ++d+   i+ g G
   CTQ26949.1 39 DDISFTVMKGETLGVVGESGCGKSTTARLLMQLLTQDSgELIFDGQG 85
                 4788*********************9988877766665567776644 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.5e-05     0.011       3      61 ..      53     110 ..      51     127 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.5e-05
  RNA_helicase   3 lyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqv 61 
                   ++G+sg+GKSt+a+ L++ l++++++    +    +++   ++ Y++q  +v++D +++
    CTQ26949.1  53 VVGESGCGKSTTARLLMQLLTQDSGELI-FDGQGVGSSRLPLKAYRRQVQMVFQDSYAS 110
                   78***************99998773332.222223455555678888888888777665 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   3.3e-05     0.026      63      89 ..     178     204 ..     149     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.3e-05
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                 ++rlv+LDEA s lD+   a++l+ll+
  CTQ26949.1 178 KPRLVILDEAVSALDKSVEAQVLQLLQ 204
                 69**********************997 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.3   3.1e-05     0.024      32     188 ..      47     219 ..      39     220 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-05
      AAA_25  32 agelallaGapgtGKttlaldlalava..tGkpwlg.........pvapeqgkVlyvsaEdsedelrrRlravgealrddarllvld...........l 108
                 +ge+  ++G +g+GK+t a  l+  ++  +G+  ++         p++  ++ V +v   ds + l++Rl  + e +++ +r++ ++           l
  CTQ26949.1  47 KGETLGVVGESGCGKSTTARLLMQLLTqdSGELIFDgqgvgssrlPLKAYRRQVQMVF-QDSYASLNPRLT-MEESIAFGQRVHGVSareaseyarylL 143
                 6888889***********9999999999999999999*****9998877777777765.66666******9.888886666666666666666666664 PP

      AAA_25 109 agveslpLfakdrggtl...ltadvdaleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                 a v+  p +++dr  ++    +++  ++++a+    ++rlv++D   +al+ + +     +++++ l++++r +  + +++ H
  CTQ26949.1 144 AHVGLEPARFADRYPHAlsgGQRQRVNIARALAM--KPRLVILDEAVSALDKSVE-----AQVLQLLQELKRTLELTYVFISH 219
                 4443444444555444412334455566666666..4************998887.....67777777777777777777777 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.6e-05     0.028       2      25 ..      51      74 ..      50     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.6e-05
         PRK  2 IgvagsSGaGkttvarklekifgr 25
                +gv g+SG+Gk+t+ar l +++ +
  CTQ26949.1 51 LGVVGESGCGKSTTARLLMQLLTQ 74
                599*****************9986 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00022      0.17       2      27 ..      50      75 ..      49      81 .. 0.87
   2 ?    0.5   0.0      0.65   5.1e+02      86     114 ..     183     208 ..     118     221 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00022
                CEEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaeg 27
                ++ + Ge+G+GK+t ++ l++++ ++
  CTQ26949.1 50 TLGVVGESGCGKSTTARLLMQLLTQD 75
                56699****************99886 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.65
                 EEE-STT-SS-TCH.........HHHHHC CS
       NACHT  86 ilDglDelvtdlgqkekqpvrtlLselir 114
                 i   lDe+v+ l+++ +++v +lL+el r
  CTQ26949.1 183 I---LDEAVSALDKSVEAQVLQLLQELKR 208
                 3...5788888888888899999988855 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.6e-05     0.051       4     108 ..      53     219 ..      51     226 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.6e-05
      AAA_33   4 lvGlpGsGKstlaerllkklgavllssdt......................................lrrrlfgtdqqskt.................. 46 
                 +vG +G+GKst a+ l+     +ll++d+                                      l            t                  
  CTQ26949.1  53 VVGESGCGKSTTARLLM-----QLLTQDSgelifdgqgvgssrlplkayrrqvqmvfqdsyaslnprL------------Tmeesiafgqrvhgvsare 134
                 69************999.....6777777777777778888888888854444444444444433330............1444444444444444444 PP

      AAA_33  47 .....................dytrvldr.lyqilnelarkalsagrnvildat..nlsrrerarflklarrlgvpvrivvvetde 108
                                      +y+++l+   +q++ ++ar  + + r vild     l+++  a++l+l+++l+   ++ +v  + 
  CTQ26949.1 135 aseyaryllahvgleparfadRYPHALSGgQRQRV-NIARALAMKPRLVILDEAvsALDKSVEAQVLQLLQELKRTLELTYVFISH 219
                 44455555555555555555555555444144444.77766666667777777733344444577777777777666666666655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00032      0.25      20     113 ..      50     204 ..      40     213 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00032
      AAA_30  20 vavltGpAGtGKttalkalreaweaa.g...............................................grviglAptgkaAkvLaeelgiea 70 
                 +  ++G  G GK+t+ + l ++++++ g                                               +rv+g++               ea
  CTQ26949.1  50 TLGVVGESGCGKSTTARLLMQLLTQDsGelifdgqgvgssrlplkayrrqvqmvfqdsyaslnprltmeesiafgQRVHGVSAR-------------EA 135
                 66799******************9996788888888888777777777444444444444444444444444444334333322.............44 PP

      AAA_30  71 stiakllkrlk.........................grarlepgtllivDEagmv.dtkqlaallkaae 113
                 s  a++l ++                          +ra   + +l+i DEa  + d +  a++l+ ++
  CTQ26949.1 136 SEYARYLLAHVgleparfadryphalsggqrqrvniARALAMKPRLVILDEAVSAlDKSVEAQVLQLLQ 204
                 444444433335555555555555555888988887434444448999999855536666666666555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00024      0.18       3      44 ..      53      92 ..      51     156 .. 0.78
   2 ?   -1.0   0.0       3.1   2.4e+03      28      86 ..     172     223 ..     135     236 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00024
      AAA_18  3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe 44
                + G +G+GK+t a+ L ++l   + +++++++++ + +   +
  CTQ26949.1 53 VVGESGCGKSTTARLLMQLL--TQDSGELIFDGQGVGSSRLP 92
                7899*************999..88888888887777766655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3.1
      AAA_18  28 lrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlael 86 
                  r +a + +l++ +++   +  ++ +e ++ +ll++l++  +      ++v+ +h  + 
  CTQ26949.1 172 ARALAMKPRLVILDEAV--SALDKSVEAQVLQLLQELKRTLE-----LTYVFISHDLHV 223
                 55666666666666666..55555666666666666665543.....555555555554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   0.00018      0.14      90     128 ..      38      77 ..      31      88 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
                  HHHHHH.HCTTSEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  90 leelke.llkdktsvlvGqSGvGKStLinallpelelktg 128
                  +++++  ++k++t  +vG+SG GKSt    l++ l++  g
   CTQ26949.1  38 VDDISFtVMKGETLGVVGESGCGKSTTARLLMQLLTQDSG 77 
                  5566551456699*************99988877666655 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.25   1.9e+02      37      53 ..      50      66 ..      42      77 .. 0.83
   2 ?    8.6   0.0    0.0015       1.2     116     160 ..     175     217 ..     151     227 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.25
        TniB 37 nlllvGdsnnGKtmive 53
                 l +vG+s +GK++ ++
  CTQ26949.1 50 TLGVVGESGCGKSTTAR 66
                5679*********9876 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0015
        TniB 116 relkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                  ++k+r++i+DE  ++l  s+++  ++l++l+ L+++l+++ v +
  CTQ26949.1 175 LAMKPRLVILDEAVSALDKSVEA--QVLQLLQELKRTLELTYVFI 217
                 4789*************777665..69999*****9999998865 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00024      0.19      12     152 ..      46     209 ..      36     218 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00024
                 HTTCEEEEEESTTSSHHHHHHHHHHHHHHHS........TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST....SEEEEEET....TSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxx....xxxxxxxxxxx RF
        DEAD  12 lgggdvlvaaeTGsGKTlaflipvlqivyet........kgktgpkalivePtreLaeqtlnnlkkfkkyid....lrvlliig....gvaardqlskl 94 
                 ++g+ + v +e G GK++ + + + q ++++        +           P+++  +q+   ++ +   ++    ++++  +g    gv+ar+  +  
  CTQ26949.1  46 MKGETLGVVGESGCGKSTTARLLM-QLLTQDsgelifdgQ----GVGSSRLPLKAYRRQVQMVFQDSYASLNprltMEESIAFGqrvhGVSAREASEYA 139
                 567778889999999998866654.456555777654321....2333456888888888888888888666554344444444444489998887777 PP

                 HTTCSEEEEEHHHHHHHH.......HCTSSH.....CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHH CS
                 xxxxxxxxxxxxxxxxxx.......xxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  95 dngvdivvgtpgrlddll.......stgkln.....lsqvrflVlDEadrlldqgfsdfinrilnqlpqi 152
                 +  +  v   p r++d         +++++n       + r+++lDEa   ld++ + ++ ++l++l+++
  CTQ26949.1 140 RYLLAHVGLEPARFADRYphalsggQRQRVNiaralAMKPRLVILDEAVSALDKSVEAQVLQLLQELKRT 209
                 6669999999999999778999999777777556556667************************999654 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00026       0.2      30      70 ..      33      73 ..      29      82 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00026
       Rad17 30 evkewlkadvLesrkkriLLisGPsGCgkstvvkvLskelg 70
                ev ++++  +    k + L + G sGCgkst+ + L + l+
  CTQ26949.1 33 EVVQAVDDISFTVMKGETLGVVGESGCGKSTTARLLMQLLT 73
                677777777777778889999************99987765 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0003      0.24       7      53 ..      33      79 ..      28      84 .. 0.78
   2 ?   -2.1   0.1       3.6   2.8e+03      97     119 ..     182     205 ..     174     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
                     HHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-E CS
  Sigma54_activat  7 alkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpf 53
                     ++ ++++ i+ ++ +  ++ ++GesG+GK++ ar++ +  +++++++
       CTQ26949.1 33 EVVQAVDDISFTVMKGETLGVVGESGCGKSTTARLLMQLLTQDSGEL 79
                     555666677777777788889***************99887776665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.6
                      EEEET.GGGS-HHHHHHHHHHHHH CS
  Sigma54_activat  97 lfLDe.igelplelQekLlrvlqe 119
                      + LDe ++ l+ ++ +++l++lqe
       CTQ26949.1 182 VILDEaVSALDKSVEAQVLQLLQE 205
                      568876889999999999999998 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00037      0.29       6      34 ..      55      82 ..      53     231 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00037
                SSTTSSHHHHHHHHHHHHHHTT--EEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  6 tkGGvGKTtlaanLaralarrglrVllvD 34
                + +G GK+t+a  L+++l +     l +D
  CTQ26949.1 55 GESGCGKSTTARLLMQLLTQ-DSGELIFD 82
                689***************99.55556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2508.61
//
Query:       CTQ26950.1  [L=336]
Description: D-ala-D-ala transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-27   94.3   0.0    1.3e-26   93.8   0.0    1.2  1  ABC_tran      ABC transporter
    5.6e-18   65.2   0.8      1e-17   64.4   0.8    1.5  1  oligo_HPY     Oligopeptide/dipeptide transporter, C-terminal 
    3.9e-10   40.0   0.1    4.3e-06   26.7   0.1    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00011   22.4   0.3     0.0013   19.0   0.3    2.1  1  AAA_22        AAA domain
    0.00052   19.7   0.0     0.0011   18.7   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
     0.0007   19.1   0.1     0.0043   16.5   0.1    1.9  1  SMC_N         RecF/RecN/SMC N terminal domain
     0.0012   19.3   1.0     0.0022   18.4   1.0    1.5  1  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.012   15.0   0.0      0.019   14.3   0.0    1.2  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
       0.04   13.3   0.0        1.6    8.1   0.0    2.3  2  TniB          Bacterial TniB protein
      0.064   12.0   0.3          1    8.1   0.1    2.6  2  ABC_ATPase    Predicted ATPase of the ABC class
       0.14   12.1   0.0       0.23   11.4   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
       0.19   11.2   0.1       0.33   10.4   0.1    1.3  1  Pox_A32       Poxvirus A32 protein
        0.3   10.2   0.0       0.35   10.0   0.0    1.1  1  G-alpha       G-protein alpha subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0   9.2e-30   1.3e-26       2     136 ..      27     184 ..      26     185 .. 0.91

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 9.2e-30
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx........... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren........... 79 
                 + vs+++++ge++a++Ge+G+GKS  l++l++l+ p     +G++++ ++++ +    q ++    + ++++qe    ++p +tv+++           
  CTQ26950.1  27 NGVSFDVQKGEVMALIGESGSGKSVTLRALMRLHPPgsseLSGTLQVGDDEVLTmsasQLRRYRGGRCAMIFQEplLAFDPVYTVGQQiieglrrhegl 125
                 78*********************************98888889999997777776887777777889*******77778899999999**********9 PP

                 ...HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                    ++++++ +al++++++  ++++++  p+++SgG++qr ++a al ++p+lll+DEpt
  CTQ26950.1 126 srqAARDRALEALRQVRIPS-PERRLDAYPHEMSGGMRQRAMIALALSCNPQLLLADEPT 184
                 99888888999999999999.999***********************************9 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.8   7.5e-21     1e-17       1      65 []     236     301 ..     236     301 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 7.5e-21
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd.klekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE++++s+++++p+HPYT+ Ll s p++  +k  +l++i+g +p+l rl+ GC Fa+RCp++++ C
  CTQ26950.1 236 VEEASMSEILRHPRHPYTQVLLGSRPKEGLKKGdALHCIPGAPPDLARLPPGCAFAERCPHRRPVC 301
                 8***************************999999******************************99 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00016      0.22       1      23 [.      38      60 ..      38     112 .. 0.78
   2 !   26.7   0.1   3.1e-09   4.3e-06     224     298 ..     144     216 ..     113     218 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00016
      AAA_21  1 lnvliGpNgsGKSnLLdaldlla 23
                +++liG  gsGKS  L+al  l+
  CTQ26950.1 38 VMALIGESGSGKSVTLRALMRLH 60
                589****************6654 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 3.1e-09
      AAA_21 224 lengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                   ++++ +  ++e+S G+++  a++++ l+ ++   lll DEp + L+  ++  +l ll+e ++ +g  ++++TH+
  CTQ26950.1 144 PSPERRLDAYPHEMSGGMRQR-AMIALALSCNP--QLLLADEPTTALDATVQIQILILLREQQKqRGLSIVFVTHD 216
                 445566667899*********.********998..9***********************7777779*********8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   9.7e-07    0.0013       5      50 ..      36      86 ..      33     219 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.7e-07
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee.....erpevvfvtlpss 50
                  +++++GesG+GK+++lr l++ ++  ++         ++ev+++ ++++
  CTQ26950.1 36 GEVMALIGESGSGKSVTLRALMRLHPPGSSELSgtlqvGDDEVLTMSASQL 86
                56899******************9975433333566665555555555544 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   7.9e-07    0.0011      13      45 ..      27      59 ..      22      66 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 7.9e-07
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDAiqal 45
                +g +++++  +++ l+G+sGsGKS  l A++ l
  CTQ26950.1 27 NGVSFDVQKGEVMALIGESGSGKSVTLRALMRL 59
                56778888555**************99999877 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   3.1e-06    0.0043      25     199 ..      37     215 ..      26     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.1e-06
                 SEEEEEESTTSSHHHHHHHHHHHC..TT..TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxx..xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvL..Ger.sakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk 120
                 ++ a++G+ GSGKs  l A++ +   G +  + +l+  + + l  + ++ ++   ++ +++f+++  +    ++ +++ ++++++ + +  + ++ ++ 
  CTQ26950.1  37 EVMALIGESGSGKSVTLRALMRLHppGSSeLSGTLQVGDDEVLTMSASQLRRYRGGRCAMIFQEPLLA---FDPVYTVGQQIIEGLRRHEGLSRQAARD 132
                 57899**************9533233554134477788877787778899999999*****9999877...7888999999999999888898888888 PP

                 HHHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSH CS
                 xxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 kevsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislre 199
                 + ++  l++++i +          ++SgG ++ +++aL ++   ++p+ l l De   aLD++   ++  ll+e++k+  + ++ +++
  CTQ26950.1 133 RALE-ALRQVRIPSPerrldayphEMSGGMRQRAMIALALS---CNPQ-LLLADEPTTALDATVQIQILILLREQQKQRGLSIVFVTH 215
                 7775.5677777655588888888*****999999999865...6676.7789********************999995444333333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.0   1.6e-06    0.0022      20     164 ..      34     204 ..      15     213 .. 0.52

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.6e-06
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql.esaipysa.laqalareellrqllde.....................aesaele 95 
                  +g  e++ l+GesG+GKs  +r+l+ +l   g   l+g+ +   ++ +++sa  ++   r + ++ + +e                     +e  +++
  CTQ26950.1  34 QKG--EVMALIGESGSGKSVTLRALM-RLHPPGSSELSGTLQVGdDEVLTMSAsQLRRY-RGGRCAMIFQEpllafdpvytvgqqiieglrrHEGLSRQ 128
                 344..8999*****************.57777444455555554222233333233333.223333333334433333333333333333333444566 PP

      AAA_16  96 awrekleealaavpelagaea.....srllellkrll.allsrderplvlvlDdlqwadeaslql.laaLlrlles 164
                 a+r++ +eal++v+  +++ +     + +   +++ +   l+    p +l+ D+   a +a+ q+ +  Llr+++ 
  CTQ26950.1 129 AARDRALEALRQVRIPSPERRldaypHEMSGGMRQRAmIALALSCNPQLLLADEPTTALDATVQIqILILLREQQK 204
                 6666666666633222222223334544444444444322222255677777777777777777767777776665 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.4e-05     0.019      31      60 ..      29      57 ..      10      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
                  EEEEGGGS-.SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE 31 lvldlkkmashllvaGatgsGKStalntLi 60
                  + +d +k +  + ++G +gsGKS++l++L+
    CTQ26950.1 29 VSFDVQKGE-VMALIGESGSGKSVTLRALM 57
                  678888888.899****************8 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0012       1.6      36      65 ..      37      66 ..      30      86 .. 0.82
   2 ?    2.8   0.1      0.05        69     108     160 ..     163     213 ..     149     229 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0012
        TniB 36 pnlllvGdsnnGKtmivekFarlhppekde 65
                + + l+G+s  GK++ ++  +rlhpp ++e
  CTQ26950.1 37 EVMALIGESGSGKSVTLRALMRLHPPGSSE 66
                56899********************98765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.05
        TniB 108 eqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlv 160
                 ++++++l  ++++++L+ DE   +l +  + q ++l +l+  + +  ++iv v
  CTQ26950.1 163 QRAMIALALSCNPQLLLADEPTTALDA--TVQIQILILLREQQKQRGLSIVFV 213
                 4556677789************99955..556778888999888888888877 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.24   3.3e+02     241     265 ..      32      57 ..       7      58 .. 0.83
   2 ?    8.1   0.1   0.00075         1     321     414 ..     155     233 ..     141     254 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.24
                 EE-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAle 265
                  ++kG v++++G    GKs  L+Al 
  CTQ26950.1  32 DVQKGeVMALIGESGSGKSVTLRALM 57 
                 378999*****************995 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00075
                 SS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETT CS
  ABC_ATPase 321 edASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmeey 414
                 ++ SG + q a i+ al  + +llL DE t+A    +   ++q l+            ++re  k+ g+s++ v+  +g+ +++Ad+v +m + 
  CTQ26950.1 155 HEMSGGMRQRAMIALALSCNPQLLLADEPTTALDATV---QIQILI------------LLREQQKQRGLSIVFVTHDIGAAVEIADRVAVMYAG 233
                 5679999999999999999999999999999965555...333333............677777999999999999999999999999999765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.23      89     131 ..      25      68 ..       8      91 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  +++ ++  +++ ++++l+G+SG GKS  + al+  +    +e+s
   CTQ26950.1  25 AVNGVSFDVQKgEVMALIGESGSGKSVTLRALMRLHPPGSSELS 68 
                  5555666666669*************999998765555555555 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00024      0.33      16      35 ..      39      58 ..      33      60 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00024
     Pox_A32 16 lalvGgsGsGktvyLlsLlr 35
                +al+G+sGsGk v L++L+r
  CTQ26950.1 39 MALIGESGSGKSVTLRALMR 58
                9***************9986 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00025      0.35      26      53 ..      39      66 ..      18     135 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00025
                EEEEESTTSSHHHHHHHHHHHCS----H CS
     G-alpha 26 llllGqseSGKsTilkqlkllykkgfse 53
                + l+G+s+SGKs +l+ l +l+ +g se
  CTQ26950.1 39 MALIGESGSGKSVTLRALMRLHPPGSSE 66
                689*******************999664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2501.82
//
Query:       CTQ26951.1  [L=422]
Description: Amidase, hydantoinase/carbamoylase family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-39  134.6   0.4      5e-39  134.2   0.4    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    4.3e-07   29.8   0.0    1.1e-06   28.4   0.0    1.6  2  Peptidase_M28  Peptidase family M28
    1.6e-06   27.9   0.0      3e-06   27.1   0.0    1.5  1  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
      0.018   14.8   0.1       0.03   14.1   0.1    1.3  1  Pilus_CpaD     Pilus biogenesis CpaD protein (pilus_cpaD)


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.4   1.1e-42     5e-39       3     206 ..      93     416 ..      91     417 .. 0.95

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 1.1e-42
                    EEES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.....THHHHHHH....HHHT.. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxx....xxxx.. RF
  Peptidase_M20   3 gsHlDvVpeeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.....gGakalle....glee.. 87 
                    gsH+D++p    +g           Gk++G       +gvlaale++r+l+d +i+++ +i+++f+++EEg+r     +G++ +++    +  e  
     CTQ26951.1  93 GSHIDTQP----TG-----------GKFDGN------YGVLAALEVVRTLNDLQIDTDAPIEVVFWTNEEGSRfvpvmMGSGVFAGvfplE--Etw 165
                    89******....67...........999999......*********************************999********9999976550..245 PP

                    ..........................TTCESEEEEEEEESSSBTCHSTETEEEE.......................................... CS
                    ..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................... RF
  Peptidase_M20  88 ..........................rekvdavfelhieepgileagklaigvv.......................................... 115
                                              ++++ a+fe+hie+++ile++ ++ig+v                                          
     CTQ26951.1 166 avtdkegvsvgealaqigyigeqtpgEHPIGAYFEAHIEQGPILEDEAKTIGIVqgvlgirwydcvvtgqashagptpmrlrqdalqvatrimqev 261
                    5666788889999999*********9********************************************************************** PP

                    .................................................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHH CS
                    .................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 116 .................................................................kvevelleggapvtlndsplvkalaeaaeel 146
                                                                                     +v +++++++++++++ +++ +a+a+aa++l
     CTQ26951.1 262 vaiagrseegrgtvgsvqvwpnsrnvvpgevtfsidmrnlsdalvdemdrqlrafiaeveresglQVALKQVSHYPAAPFD-AECQQAIADAAQRL 356
                    ***************************************************************999999999999999999.*************9 PP

                    HTSCEEEEEESSSBHTHHHHTTT.EEEEEEESSG.GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 147 fgekvelivsgpggtdarffagi.ptvmifgpgs.glaHspnEyvdledlekgikvlarlle 206
                     g+  ++ivsg +g+da ++  + pt mif p++ g++H++ Ey ++e++++g++vl ++++
     CTQ26951.1 357 -GYPARPIVSG-AGHDAVYMSYLaPTGMIFIPCKdGISHNEIEYASPEHVAAGANVLLQVML 416
                    .**********.********77789********55**********************99986 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   2.5e-10   1.1e-06       1     104 [.      75     177 ..      75     207 .. 0.81
   2 ?   -2.0   0.0      0.52   2.3e+03      62     108 ..     260     307 ..     249     353 .. 0.59

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 2.5e-10
                    EEEEEESTTCE.SEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSG.....SSHHHHHHHHHHCCCTT CS
  Peptidase_M28   1 Nviatlegkat.devlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEa.....gllGSkafakakpelkk 90 
                    Nv ++ eg+++    ++ g+H+D+ ++       G  D   gv a Le++r+l++ + + +  + ++f++ EE       ++GS  fa   ++l++
     CTQ26951.1  75 NVFMRREGRNPgLPPIVSGSHIDTQPT---G---GKFDGNYGVLAALEVVRTLNDLQIDTDAPIEVVFWTNEEGsrfvpVMMGSGVFA-GVFPLEE 163
                    999999999996669***********8...4...679******************77788*************999999999999999.6666666 PP

                    EEEEEEECS-SSSS CS
  Peptidase_M28  91 iaavlnlDmvgsgg 104
                    + av + + v  g+
     CTQ26951.1 164 TWAVTDKEGVSVGE 177
                    66666666665555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.52
                    EEEEEEESSCSG.SSHHHHHHHHHHCCCTTEEEEEEECS-SSSS--EE CS
  Peptidase_M28  62 gvrflffdaEEa.gllGSkafakakpelkkiaavlnlDmvgsggkell 108
                    +v+ ++   EE  g +GS +   ++ +  + ++ + +Dm + ++  ++
     CTQ26951.1 260 EVVAIAGRSEEGrGTVGSVQVWPNSRNVVPGEVTFSIDMRNLSDALVD 307
                    455555555554488888777744447777778888887554444333 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   6.8e-10     3e-06       4     106 ..     223     322 ..     220     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 6.8e-10
                 -EEEEEEEEEE-B-EEGG.-TTTTB-.HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-C.CCCEESSEEEEEEEEEHHHHHHHHHHHHHHHH CS
   M20_dimer   4 kGlaggkitvkgkagHsg.apgagaN.AieklarllaeledeegdiaeerslprttlnvtgiegGs.aknvipdeaeakidiRllpgedpeevleeiee 99 
                  G+ ++ + v+g+a H+g  p + +  A+  + r+++e  +  g+ +      +   +v++++    ++nv+p+e++++id+R l    ++e   ++++
  CTQ26951.1 223 LGIRWYDCVVTGQASHAGpTPMRLRQdALQVATRIMQEVVAIAGRSE------EGRGTVGSVQVWPnSRNVVPGEVTFSIDMRNLSDALVDEMDRQLRA 315
                 6999**************888776655***************99844......44444555555556*********************9***9999999 PP

                 HHTSCCS CS
   M20_dimer 100 ilekeap 106
                 +++++ +
  CTQ26951.1 316 FIAEVER 322
                 9998866 PP

>> Pilus_CpaD  Pilus biogenesis CpaD protein (pilus_cpaD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   6.7e-06      0.03      33     112 ..     285     364 ..     261     375 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.7e-06
  Pilus_CpaD  33 ivveeaeasldlkvasgdggLtaaqrarlealaeeyrregagaivisvpsgssneaaaaaaaaeiravlaaaGvpaseis 112
                   v + e ++++ + + +  L +++ ++l+a+++e+ re++ +++++  s+++++   a+  ++i++++ + G+pa+ i 
  CTQ26951.1 285 RNVVPGEVTFSIDMRNLSDALVDEMDRQLRAFIAEVERESGLQVALKQVSHYPAAPFDAECQQAIADAAQRLGYPARPIV 364
                 56888999999***999**************************************999****************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3235.54
//
Query:       CTQ26952.1  [L=307]
Description: Uncharacterized transporter YdeK [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-28  100.0  36.5    3.1e-14   53.3  13.0    2.0  2  EamA      EamA-like transporter family
     0.0019   18.2   0.7     0.0072   16.4   0.1    2.3  2  LAB_N     Lipid A Biosynthesis N-terminal domain
  ------ inclusion threshold ------
        7.6    4.6   9.7       0.38    8.9   2.7    1.8  3  YfhO      Bacterial membrane protein YfhO


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3  13.0   5.3e-18   3.1e-14       2     130 ..      15     141 ..      14     148 .. 0.91
   2 !   52.9  15.5   6.9e-18   4.1e-14       2     133 ..     157     289 ..     156     292 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 5.3e-18
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlaf.llffyalkktsasnaslits 99 
                 +g+l  ll++++++ + ++++ ++++++pl ltf+r  iag+l +++++ +++k+  ++l ++ +l++++  g+vl+f ll   al++++++   +++ 
  CTQ26952.1  15 SGWLHGLLGVIIFSGSLPATRLAVQDMDPLLLTFLRASIAGLLAIALLVGFRQKR--PRLAQLVSLIIVSS-GVVLGFpLLTALALQRITSAHSIVFIG 110
                 79999**************************************************..99999999888885.5555555******************** PP

        EamA 100 lePvftlilsvlllgekltlkqllgivlill 130
                 l P++t++++vl  ge++    ++  +l+ l
  CTQ26952.1 111 LLPLMTALFGVLRGGERPRRAFWIFSLLGSL 141
                 ***********************99988654 PP

  == domain 2  score: 52.9 bits;  conditional E-value: 6.9e-18
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnaslits 99 
                 +g+ll+l+a+++ ++++    +l r++  +++  + ++ia  l+l+ +ll +      +s ++w++l +++l++++++f++++++l   + + ++ +++
  CTQ26952.1 157 SGDLLMLAAVIVCGLGYAEGAKLTRELGGWQVICWALVIALPLMLPASLLVQPASwHAISASSWAALGYVSLFSMLIGFIFWYKGLAACGIAAVGQLQL 255
                 799********************************************9999888889****************************************** PP

        EamA 100 lePvftlilsvlllgekltlkqllgivlillGvl 133
                 l+P f l ls++ll+e+++ + l+ ++ ++l v+
  CTQ26952.1 256 LQPFFGLGLSAALLHETVSPLMLAVTLGVVLCVV 289
                 *******************998877666665554 PP

>> LAB_N  Lipid A Biosynthesis N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.2e-06    0.0072      30      63 ..     130     163 ..     127     168 .. 0.86
   2 ?   -2.1   0.0       0.7   4.2e+03      28      39 ..     233     244 ..     230     254 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.2e-06
       LAB_N  30 vlFWvlSllGslllliYailrkDpvlilgqslgl 63 
                  +FW++SllGsll++ +a+ ++  + + g +l l
  CTQ26952.1 130 RAFWIFSLLGSLLVVGFALTQNAAASLSGDLLML 163
                 58******************99988888877765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.7
       LAB_N  28 lpvlFWvlSllG 39 
                 +  +FW+  l++
  CTQ26952.1 233 IGFIFWYKGLAA 244
                 567899977765 PP

>> YfhO  Bacterial membrane protein YfhO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.3    0.0051        31      93     137 ..      44      87 ..      24      95 .. 0.77
   2 ?    8.9   2.7   6.4e-05      0.38     348     449 ..      56     158 ..      47     183 .. 0.58
   3 ?    3.2   5.4    0.0035        21     310     425 ..     103     220 ..      85     244 .. 0.52

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0051
        YfhO  93 lliillKlglaglsfayllkkrskkkskalallfstaYalsGfvi 137
                 ll+++l+ ++agl +  ll  + +k+ ++++l +s++ + sG+v+
  CTQ26952.1  44 LLLTFLRASIAGLLAIALLVGFRQKRPRLAQL-VSLIIVSSGVVL 87 
                 68999999999999999999999888755544.455555566655 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 6.4e-05
        YfhO 348 flllllaaealkelkqlk.klkllaailllvlllliilllknkksynfltssqlllgllllllalllllllll....kkkkkklvllllllvlvlelgg 441
                 +l ++l + + +++++l+  ++l++++  +vl++ +   l+ + +    ts + ++ + ll l++ l+++l      ++  + + ll +llv+ + l++
  CTQ26952.1  56 LLAIALLVGFRQKRPRLAqLVSLIIVSSGVVLGFPLLTALALQRI----TSAHSIVFIGLLPLMTALFGVLRGgerpRRAFWIFSLLGSLLVVGFALTQ 150
                 344444444445555554455555555555555555555555555....45455566666666666666555543333333333333445677777778 PP

        YfhO 442 naylslnk 449
                 na  sl++
  CTQ26952.1 151 NAAASLSG 158
                 87777766 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.0035
        YfhO 310 allllllilsfllpplnlvwhgfqaPvgfpyRfsfilsflllllaaealkelkql...k.klkllaailllvlllliilllknkksynfltssqlllgl 404
                 a  ++++ l  l+++l  v+ g++ P     R  +i+s+l +ll++ +          +  l +laa+++  l+++     + +k +  l  +q++  +
  CTQ26952.1 103 AHSIVFIGLLPLMTALFGVLRGGERPR----RAFWIFSLLGSLLVVGFALTQNAAaslSgDLLMLAAVIVCGLGYA-----EGAKLTRELGGWQVICWA 192
                 333466777778899999999999999....*********999998877633333122223334444444444444.....333333334443333322 PP

        YfhO 405 lllllalllllllll........kkkkkk 425
                 l++ l l+l  + ll         + +++
  CTQ26952.1 193 LVIALPLMLPAS-LLvqpaswhaISASSW 220
                 222222222222.2222222222333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.21s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2113.50
//
Query:       CTQ26953.1  [L=444]
Description: putative aminotransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-34  118.1   0.0    6.1e-34  117.8   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    1.1e-10   41.0   5.4    1.9e-10   40.3   0.3    3.1  3  GntR             Bacterial regulatory proteins, gntR family
    0.00021   20.2   0.0    0.00032   19.6   0.0    1.2  1  Aminotran_MocR   Alanine-glyoxylate amino-transferase
  ------ inclusion threshold ------
      0.046   13.7   0.1       0.18   11.8   0.0    2.0  2  MarR             MarR family
       0.05   12.1   0.0      0.076   11.5   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
      0.079   12.9   0.1       0.26   11.3   0.1    1.9  1  HTH_Crp_2        Crp-like helix-turn-helix domain
       0.54   10.5   5.0       0.66   10.3   0.3    3.3  3  GGDEF_2          GGDEF-like domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.0   2.4e-37   6.1e-34       2     348 ..      86     419 ..      85     431 .. 0.90

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 2.4e-37
                    EEEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEE CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeil 97 
                    dv++L+ n ++  ++   l e++++ +  a++  +  +y+p  g  + +  +a+ l  ++  + ++e +v+  +Ga++++++  + l l pgd++ 
     CTQ26953.1  86 DVVDLNFNYPSLPDQGDALREALRQLAM-AGDIDSHLRYQPHAGRLAERDIIARHLT-CQHFAPDAE-NVLIVNGAQHGLAVTVMGL-LRPGDVVA 177
                    6889999999888666667776666666.***************9999999999999.*********.*******************.9******* PP

                    EEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTC CS
  Aminotran_1_2  98 vpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagf 193
                    v+++ty+ +k  + l+++e+  +p+++e   + dl+al+++ ++    ++ + v    + hNP G v++  + ++l+dla+++ ll++ D aYa +
     CTQ26953.1 178 VDALTYSGFKVLAALYHLELAAIPCRPE---GPDLQALQTLCQQR---RV-RAVYTMPTLHNPLGWVLNIGQRQALADLARQHDLLIIEDAAYARL 266
                    **************************55...89*******88873...33.4566678************************************** PP

                    BSSSSHTHHHHGGSTTSTT.EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 194 vfgsldavatranveeepn.llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrk 286
                    v+ ++      + v+ +p+ ++ v+++sK+ + +G+RvG +++ ++++  ++++ r+ +   ++l + ++ a+++d   ++++ ++ rq   +r +
     CTQ26953.1 267 VSRPP-----PPVVSYAPErTVYVTGFSKNIA-TGLRVGVVISPPRYRPEIERAIRATTWntPTLISSLICAWIEDGT-VARFETQKRQDARQRQQ 355
                    ***76.....66777777788*********95.9***********99999999988887778**************88.67788888898888888 PP

                    HHHHHHHHSTEEEECCSCSSEEEEEETHH.CHHHHHHHHHHTCTEEEEEGGGGTS....TTEEEEEC CS
  Aminotran_1_2 287 elrdeLaelglkvlasqsgmflltdlsae.takelskkLleevgvyvtpgtsftv....pgrlRitv 348
                    + r+ L  +gl+v++ +  +f++  l +e +a+ l+ +L e+  + v+  ++f v    p+ lRi +
     CTQ26953.1 356 VARELL--CGLPVVSHPDSYFVWLPLGEEsRADRLANALMER-RISVSTAEPFCVsatiPQALRIAL 419
                    888888..9********99999999999989***********.******999999****99****98 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.3   7.3e-14   1.9e-10       2      64 .]       5      67 ..       4      67 .. 0.98
   2 ?    2.2   0.0     0.056   1.4e+02      41      52 ..     104     115 ..     102     120 .. 0.85
   3 ?   -3.6   0.2       3.6   9.3e+03      42      51 ..     243     252 ..     243     256 .. 0.85

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 7.3e-14
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y++v++r  + I+sg+l +G++LP+ r Laa   +s  t  +++r+Le+ glv  + grGtfV
  CTQ26953.1  5 YKAVVDRYAQAIRSGQLPAGSRLPTHRTLAAGERISLATATRVYRELEEMGLVSGETGRGTFV 67
                8999**********************************************************9 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.056
                 HHHHHHHHHHTT CS
        GntR  41 vReALrrLeaeg 52 
                 +ReALr+L+ +g
  CTQ26953.1 104 LREALRQLAMAG 115
                 8*******9776 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.6
                 HHHHHHHHHT CS
        GntR  42 ReALrrLeae 51 
                 R+AL  L+++
  CTQ26953.1 243 RQALADLARQ 252
                 8999999986 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.2e-07   0.00032     134     217 ..     183     264 ..     151     268 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.2e-07
                     -HHHHHHHHHHT-EEEEEEEETTEE-HHHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTS CS
  Aminotran_MocR 134 ydrhfllleelGielltvdlqddGpdvdaveklvaedasvkGilavpkysnptGetiseevarrlaalkaaapdfrifaddaya 217
                     y    +l   + +el +++ +++Gpd++a++ l   +  v+ ++++p+  np G ++   + + la l     d+ i  d aya
      CTQ26953.1 183 YSGFKVLAALYHLELAAIPCRPEGPDLQALQTLCQ-QRRVRAVYTMPTLHNPLGWVLNIGQRQALADLA-RQHDLLIIEDAAYA 264
                     5555566677889******************9975.678********************9999999985.5789********97 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.9e-05      0.18      22      48 ..      32      58 ..      26      60 .. 0.89
   2 ?   -2.5   0.0         2   5.1e+03       1      15 [.     181     195 ..     181     196 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
                HHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR 22 eLakklgvskstvtrvldrLekkGlie 48
                 La    +s +t+trv ++Le+ Gl++
  CTQ26953.1 32 TLAAGERISLATATRVYRELEEMGLVS 58
                57888899*****************96 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2
                 --HHHHHHHHHHHHS CS
        MarR   1 ltltqfviLrilyeq 15 
                 lt++ f++L+ ly+ 
  CTQ26953.1 181 LTYSGFKVLAALYHL 195
                 78999*****99985 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     3e-05     0.076      67     176 ..     149     263 ..     146     270 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3e-05
                      -SEEEEESSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCT.TEEEEE.EESS-TTTT----H.. CS
  Cys_Met_Meta_PP  67 geaalavssGmaAiaaailallkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaike.ntklvy.lEtptnpllkvvDi.. 156
                      +e++l+v+  +  +a++++ ll+ Gd + v+   Y+g + l   +  +l       +  dl++l++ +++ ++++vy + t+ npl  v+ i  
       CTQ26953.1 149 AENVLIVNGAQHGLAVTVMGLLRPGDVVAVDALTYSGFKVLAALYHLELAAIPCRPEGPDLQALQTLCQQrRVRAVYtMPTLHNPLGWVLNIgq 242
                      678888899999999**********************9999999999998888899999*********9989*****557*****988888844 PP

                      .HHHHHHHHHTT-EEEEEGTT CS
  Cys_Met_Meta_PP 157 .ekiaklakkagvlvvvDntf 176
                       +++a+la+++++l++ D+++
       CTQ26953.1 243 rQALADLARQHDLLIIEDAAY 263
                      46799999***9999988776 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1    0.0001      0.26      23      62 ..      29      70 ..      14      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
                HHHHHHHHTTSSHHHHHHHHHHHHHTTSEE..ETEEEEES-H CS
   HTH_Crp_2 23 tqeelAsmlGltretvsrilseLkreglis..rgrririldl 62
                t++ lA+   ++  t +r+ +eL++ gl+s  +gr+  ++dl
  CTQ26953.1 29 THRTLAAGERISLATATRVYRELEEMGLVSgeTGRGTFVRDL 70
                89999999999*******************744554777775 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.51   1.3e+03      25      47 ..      82     114 ..      76     156 .. 0.67
   2 ?   -1.2   0.1      0.94   2.4e+03      38      74 ..     209     247 ..     187     270 .. 0.69
   3 ?   10.3   0.3   0.00026      0.66      27      95 ..     339     421 ..     293     440 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.51
     GGDEF_2  25 vvviel..........eedaerllraleealra 47 
                 vv++++          ++++++l++al++++ a
  CTQ26953.1  82 VVAADVvdlnfnypslPDQGDALREALRQLAMA 114
                 555554444555544455666666666666543 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.94
     GGDEF_2  38 lraleealralgpdalvav..rgdrlvlllpaedeedae 74 
                 l+al++++++++ +a++++   ++ l ++l   ++++++
  CTQ26953.1 209 LQALQTLCQQRRVRAVYTMptLHNPLGWVLNIGQRQALA 247
                 678888888887777776433555555555555554444 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00026
     GGDEF_2  27 vieleedaerllraleealralgpdalvavrgdrlvlllpaedeedaeallerlarrlgg..............lsvriGiGs 95 
                 v+++e+++++ +r+ ++++r+l  +  v+++ d+  ++lp+ +e+ a++l+++l +r  +              + +ri++Gs
  CTQ26953.1 339 VARFETQKRQDARQRQQVARELLCGLPVVSHPDSYFVWLPLGEESRADRLANALMERRISvstaepfcvsatipQALRIALGS 421
                 444566777788889999999999999*****************999999888874432224444555555555566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3174.12
//
Query:       CTQ26954.1  [L=487]
Description: Transcriptional regulator, GntR family domain / Aspartate aminotransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-12   45.6   0.0    1.5e-11   43.7   0.0    2.1  2  GntR           Bacterial regulatory proteins, gntR family
    6.9e-10   38.6   0.0    2.4e-09   36.9   0.0    1.8  1  Aminotran_1_2  Aminotransferase class I and II
  ------ inclusion threshold ------
      0.036   14.3   0.0       0.12   12.7   0.0    1.8  2  DUF2011        Fungal protein of unknown function (DUF2011)
        2.2    8.9   9.7        2.3    8.7   2.7    2.3  2  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   3.4e-15   1.5e-11       1      63 [.      16      78 ..      16      79 .. 0.97
   2 ?   -3.5   0.0       1.9   8.4e+03      23      31 ..     403     411 ..     399     413 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 3.4e-15
                HHHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEE CS
        GntR  1 lyeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtf 63
                l+eqv e L + Ilsg +++ ++LPs r+La+++ Vsr+t   +   L+ eg++++r+++G +
  CTQ26954.1 16 LQEQVRETLVNAILSGIFAADTPLPSCRQLASQLRVSRNTTALVFESLVNEGYLISRPRSGYY 78
                589**********************************************************87 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.9
                 B---HHHHH CS
        GntR  23 kLPsereLa 31 
                  LPs r+La
  CTQ26954.1 403 YLPSCRALA 411
                 69*****98 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   5.3e-13   2.4e-09      66     294 ..     191     402 ..     167     477 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 5.3e-13
                    TGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT CS
  Aminotran_1_2  66 kreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPt 161
                     ++ +++ + G++ ++ +l++ll l   ++i v +p + + +n + l+++evv+ p++   + ++ l++  +++             ++ + + Pt
     CTQ26954.1 191 APD-EILITLGSQNALYLLTRLL-LSSTTRIGVENPCFREAINTFLLADAEVVPHPVD---EEGIVLNERPCDYY-----------YVTPGHQVPT 270
                    555.99*****************.********************************44...33444444444444...........47888889** PP

                    --B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTT.EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SH CS
  Aminotran_1_2 162 GtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepn.llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ss 254
                    G+ ++ +  ++ll++a ++ ++++ D+  ++  f+ l + +  ++++++   ++ v+slsKa+ ++G+R+G+ ++++++++ +r l r ++   ++
     CTQ26954.1 271 GVTMSSARRRQLLEHAARHDAVIIEDDYDSESNFT-LNPLP-ALKASDRSGrVVYVSSLSKAL-SPGLRLGFMVADPDLIDEARALRRLVYRhpPT 363
                    ***************************88887777.43333.6777777779**********9.5****************************999 PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 255 llqaavaaalsdallkqseleemrqrlqkrrkelrdeLae 294
                      q+  a  l   + ++ +l       ++r ++l+++L++
     CTQ26954.1 364 NIQYQMAHFLAQGH-YETHLRRYHYDSAQRWERLHAALQR 402
                    98888888877766.4445555555555555555555544 PP

>> DUF2011  Fungal protein of unknown function (DUF2011)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.2     1e+04      38      52 ..      71      86 ..      61      95 .. 0.63
   2 ?   12.7   0.0   2.6e-05      0.12      26      68 ..     243     293 ..     234     304 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.2
     DUF2011 38 eRpks.YYfaeplsee 52
                +Rp+s YY++ ++ e+
  CTQ26954.1 71 SRPRSgYYLHPDYHEA 86
                4555438887766655 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.6e-05
     DUF2011  26 speegeggfivpeRpksYYfaep.........lseeereqfeeaAvsgedvl 68 
                  p  +e g++ +eRp +YY  +p          s+++r+q+ e A   + v+
  CTQ26954.1 243 HPV-DEEGIVLNERPCDYYYVTPghqvptgvtMSSARRRQLLEHAARHDAVI 293
                 444.45566***********************88888888888777777665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.7     0.012        53     140     198 ..      94     188 ..      15     195 .. 0.48
   2 ?    8.7   2.7   0.00052       2.3      87     217 ..     316     459 ..     271     462 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.012
                    C......CCCHCHCCCGHH.......................HHCCHHCHTTCCHHTT-TTGC........EEECTT-CHHHHCHHCCCH..STTE CS
  Abhydrolase_6 140 a......daawrarlarla.......................allaglgllpaaawadlpvpl........lvlggeDplvprllerlla..qaga 196
                    a       ++w++rl+  +                       +      ++p+a w+ +  +l        +v+   D+ vp l+e++ +  ++++
     CTQ26954.1  94 ApqreaaAPRWGDRLQMTPsqqesilkpagwmhyrypfiygqP---DTRQFPLATWRSAANWLhggvrdpaWVIDHIDQDVPMLIEQIRTrvLPKR 186
                    0221111234444443333444444444444433333332221...22233444444444444444444775667778888888888877655555 PP

                    EE CS
  Abhydrolase_6 197 rl 198
                    ++
     CTQ26954.1 187 GI 188
                    55 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00052
                    ..EE..EEES-......----TTTS----TTHHHHHHTT-C.CCCHCCH...S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTG CS
  Abhydrolase_6  87 lvvg..vlldppp....talpagllaaalelllallallrl.lawlsre...plprlfladedadaawrarlarlaallaglgllpaaawadlpvp 172
                    +++g  v++++ +    ++l++g++ a + l++ ++al+rl ++ + ++    ++ +fla    + ++ + l+r     a+++++ +aa+ +++++
     CTQ26954.1 316 DRSGrvVYVSSLSkalsPGLRLGFMVADPDLIDEARALRRLvYRHPPTNiqyQMA-HFLA----QGHYETHLRRYHYDSAQRWERLHAALQRYLPS 406
                    2333334444422222234444444444444444444333322222211221122.2222....46666666666666666666667777777777 PP

                    CEEECTT-CHHHHCHH..........CCCHSTTEEETCE...SSS-HHHHSH.HHH CS
  Abhydrolase_6 173 llvlggeDplvprlle..........rllaqagarlpvvlpgaGHlphleep.dev 217
                    +  l+g++ + + +l+           + a a+a++  + pga H+++  +p d +
     CTQ26954.1 407 CRALAGSEHANAFWLQtpaqintqqlTWRA-AHAGV-LIEPGARHFLNA-APpDNY 459
                    755555555444333311112221114444.88888.9999999*9998.876765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3501.59
//
Query:       CTQ26955.1  [L=283]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-51  172.6   0.0    9.4e-51  172.4   0.0    1.1  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    1.8e-07   31.3   0.0    9.1e-05   22.6   0.0    2.3  2  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine
    0.00047   20.2   0.0    0.00074   19.5   0.0    1.4  1  NMT1             NMT1/THI5 like


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.4   0.0   1.6e-54   9.4e-51       1     225 []      36     261 ..      36     261 .. 0.93

  Alignments for each domain:
  == domain 1  score: 172.4 bits;  conditional E-value: 1.6e-54
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 l+v++++dy+Pf++++ ng+  Gf+ d+++++ k  ++ v+  + +w++l++a+ +g++D+a ++  it+eR +++dF+ p+ sa+  ++ r++d    
  CTQ26955.1  36 LKVATEDDYAPFNFMN-NGQADGFNKDMLEELRKYAKFHVDQSILPWTGLLAAVSTGQYDMALTGAVITDERLKVFDFTPPWASAQHYFVKRAGD---- 129
                 79**************.************************9988**************************************999999999765.... PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC.......TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkk.......gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiav 191
                 +s++++adL+gkkvg qags+  + l e +++          +ve+++++ea+++L+n+r d+v++  +++++l+k +p+  ++   +++ + + a+ +
  CTQ26955.1 130 TSLNTIADLSGKKVGLQAGSALLARLPELKAMlektggkLGPVVEYPSYPEAYADLANKRLDYVINVVISVNDLAKAKPKVFAKG-LAVSGPGYMAWPI 227
                 5777888**************888877644446667665445689****************************************.************* PP

                 ETTTHHHHHHHHHHHHHHHHTTHHHHHHHHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 192 rkgdseLrkainkalaelkadgtlakisekWfge 225
                 +k++++L++ + ++++ +k++g+la++++kWfge
  CTQ26955.1 228 PKNSPQLLAYMTRFMNHMKETGKLAELQKKWFGE 261
                 ********************************96 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0012       7.2      23      47 ..      50      74 ..      35      80 .. 0.80
   2 !   22.6   0.0   1.5e-08   9.1e-05      66     106 ..      80     120 ..      73     127 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0012
                     -GGGGEESHHHHHHHHHHHHHT-EE CS
  Lig_chan-Glu_bd 23 egneryeGfcidLlkelakklgfkY 47
                      +n + +Gf  d+l+el+k  +f+ 
       CTQ26955.1 50 MNNGQADGFNKDMLEELRKYAKFHV 74
                     4567899*************99986 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 1.5e-08
                      EB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE- CS
  Lig_chan-Glu_bd  66 ewnGmigellekkadlavapltitaeReevvdFtkpfmelg 106
                       w+G++  + +++ d+a++   it eR +v dFt p+ +  
       CTQ26955.1  80 PWTGLLAAVSTGQYDMALTGAVITDERLKVFDFTPPWASAQ 120
                      5***********************************98765 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.2e-07   0.00074      73     151 ..     119     200 ..      69     217 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.2e-07
                 --EEEEEECCC-.-SSGGGGTTSEEEE-S-TT...HHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTT CS
        NMT1  73 plsglivlkdsg.ikspkDLkGkrigyvgspf...ekallkallakdggdpsdvtlvnvggtslakalltgkvDaaiggyenw 151
                     ++ ++++  +++++DL Gk++g++ ++        lka+l+k gg+   v   +  + +++++l++++ D +i ++  +
  CTQ26955.1 119 AQHYFVKRAGDTsLNTIADLSGKKVGLQAGSAllaRLPELKAMLEKTGGKLGPVVEYPS-YPEAYADLANKRLDYVINVVISV 200
                 4455666776667*************99977645567789****************999.9999************9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2096.04
//
Query:       CTQ26956.1  [L=213]
Description: putative binding-protein-dependent transport systems inner membrane component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-20   72.4  10.0    6.3e-20   71.7  10.0    1.3  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7  10.0   3.5e-24   6.3e-20       1     184 [.      27     209 ..      27     210 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 3.5e-24
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasr 94 
                   g+++G+l+a   + r  ++d+ll ++i + +++P + l+++l+l +  ++i  + + ++i++l+l + +++  i r+a+r+ p++++eaa+  G++r
    CTQ26956.1  27 GVVAGLLIAlvrMLRLPVIDQLLVVYISLARATPLVTLVLFLFLSLPTMGINLDKNVAAIVALTLNTSAFNAEIWRNAFRTFPREQREAAESVGMRR 123
                   899*********9******************************9999999999******************************************** PP

  BPD_transp_1  95 wqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprvr 184
                   w+ fr+++lP++ +  ++ l++ + +l++g+ ++  +g    + +l+  ++ ++ +++    ++la+++++++++ ++  lq + +++ r
    CTQ26956.1 124 WTYFRYIMLPQMWIESLPALVNEMSFLIKGSPAIAVIG----VVDLTRVTNRISSVTYEPLSPILAAGLLYVAIIGCLLKLQGIAERKAR 209
                   **************************************....888888888888888888899999999999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1689.92
//
Query:       CTQ26957.1  [L=221]
Description: Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-16   58.4  18.4    7.6e-16   58.4  18.4    1.5  1  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        1.2    9.4  19.7       0.11   12.8   8.5    2.1  2  EI24          Etoposide-induced protein 2.4 (EI24)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4  18.4   8.5e-20   7.6e-16       2     179 ..      37     209 ..      31     212 .. 0.91

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 8.5e-20
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqif 98 
                   i l +++  +++k++++++ +++ +++++P+++la ll++ +  l+i    +++++++l+++ ++y++ i r+  r+ + +++eaa a G sr  if
    CTQ26957.1  37 IALCYFSE-YQKKVINRIIIGFVSLMRAIPFLILAYLLYYGLPQLGISMEPWTAGLLALIIYHGAYFFEILRSQRRVFSGGYIEAAIAQGFSRYAIF 132
                   44444555.999************************************************************************************* PP

  BPD_transp_1  99 rkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrll 179
                   r+++lPn+++++++++++++++ l+++++l++++    ++  +  a++ + + +i + ++++++ +++++++++  l + l
    CTQ26957.1 133 RRIILPNIVSSALPLIGNQLIICLKDTAFLSIIT----VQEITAAANSVQATYFIPFNAFIVAIGLYWAISILLEMLIKRL 209
                   **********************************....7777777777777777778889999999999999999888766 PP

>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   8.5   1.2e-05      0.11      38     139 ..       7     106 ..       3     115 .. 0.83
   2 ?    2.5   3.3     0.017   1.5e+02       5      78 ..     121     203 ..     117     218 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
                 H-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHCCTTSHHHHHHHHHHHHHHHHHHHHH..HHTTHHH....HHHHHHHHHHHHHHH CS
        EI24  38 lwvllasllvllllllplwlfplvalllaapfygllaekvekrhlglvkslaeslkslllllllllvllpl..liPvvglilsplllswltayfycfey 134
                 +w++  s+++ l+++l l+++ ++a l++++ +   +e+ +k    +++++  ++ sl + +++l+++++l  ++P +g+ + p+  ++l   +y+  y
  CTQ26957.1   7 IWSVRDSFIAGLFATLELFITAALAALIIGIALCYFSEYQKK----VINRIIIGFVSLMRAIPFLILAYLLyyGLPQLGISMEPWTAGLLALIIYHGAY 101
                 466666777777777778888899999999999999999985....8999**********************988**************9999999888 PP

                 HHHHH CS
        EI24 135 ldlaa 139
                 + +++
  CTQ26957.1 102 FFEIL 106
                 77766 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.017
                 HHHHHTS.TTTHHHHHHHHHHHHHHHHHHHHHHH....-TTHHHHHHHHHHHHH.....HHHHHHHHHHHHHHHHHHHHHHHH CS
        EI24   5 glglllsspkllallllplllnlllfllllvlll....wvllasllvllllllp.....lwlfplvalllaapfygllaekve 78 
                 ++ + +s+ ++++ ++lp +++++l l++  l++     ++l+++ v  + +++      +++p+ a+++a  +y++++  +e
  CTQ26957.1 121 AIAQGFSRYAIFRRIILPNIVSSALPLIGNQLIIclkdTAFLSIITVQEITAAAnsvqaTYFIPFNAFIVAIGLYWAISILLE 203
                 55566677889999999999999999977555554444133333333333333344444777777777777777777776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1832.23
//
Query:       CTQ26958.1  [L=253]
Description: histidine/lysine/arginine/ornithine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-35  121.2   0.1    6.1e-35  120.7   0.1    1.2  1  ABC_tran     ABC transporter
    1.5e-11   44.7   0.0    2.4e-06   27.6   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    2.3e-07   30.5   0.3    6.8e-06   25.7   0.3    2.1  1  SMC_N        RecF/RecN/SMC N terminal domain
    3.7e-05   22.6   0.0    0.00065   18.5   0.0    2.0  2  AAA_13       AAA domain
    0.00061   19.5   0.0     0.0012   18.6   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
      0.001   18.8   0.7      0.004   16.9   0.2    1.9  2  AAA_30       AAA domain
     0.0012   19.4   0.0     0.0021   18.6   0.0    1.3  1  AAA_23       AAA domain
     0.0032   17.4   0.0     0.0065   16.4   0.0    1.5  1  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.013   14.3   0.0        1.9    7.2   0.0    2.2  2  ABC_ATPase   Predicted ATPase of the ABC class
      0.016   15.6   0.4      0.024   15.0   0.4    1.6  1  AAA_16       AAA ATPase domain
      0.023   13.9   0.0      0.023   13.9   0.0    1.2  1  G-alpha      G-protein alpha subunit
      0.084   13.1   0.3       0.23   11.7   0.3    2.0  1  AAA_22       AAA domain
      0.089   12.7   0.1       0.66    9.9   0.0    2.1  2  NACHT        NACHT domain
        0.1   12.7   0.0        0.2   11.7   0.0    1.4  1  DUF87        Helicase HerA, central domain
       0.12   12.6   0.1       0.21   11.7   0.1    1.8  1  AAA_33       AAA domain
       0.15   12.0   0.1       0.57   10.1   0.1    2.1  1  ATPase_2     ATPase domain predominantly from Archaea
       0.16   10.4   0.1       0.31    9.5   0.0    1.4  2  ST7          ST7 protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.1   5.8e-38   6.1e-35       1     137 []      22     178 ..      22     178 .. 0.86

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 5.8e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..........B-HHHCCHCEEEE-SS--S-TTSBHHHH.......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..........qeleslrkeigvlpqepqlfpeltvren.......... 79 
                 l++++l++++g++v i+G++G+GKStLl+++  l++p+ Gei++ g+ l            ++l + r+++g+++q  +l+p+ltv++n          
  CTQ26958.1  22 LRDINLTVEKGTVVSILGSSGSGKSTLLRCMNWLEQPDRGEIHIGGQRLGIdeqrgramshRQLAKIRERVGMVFQSFNLWPHLTVQQNvseallrvkg 120
                 689***************************************7777776666677777777*************************************9 PP

                 ....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                     e+++ + + l+k+g+ +    +++  p +LSgGqkqrva+ar+l+  p+++l+DEpt+
  CTQ26958.1 121 mkrdEAKAMAMQQLEKVGMAH----KADVYPITLSGGQKQRVAIARSLAMSPEVILFDEPTS 178
                 854444444555556666555....345668*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.7e-05     0.017       4      25 ..      37      58 ..      34      81 .. 0.75
   2 !   27.6   0.0   2.2e-09   2.4e-06     237     297 ..     150     207 ..     117     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-05
      AAA_21  4 liGpNgsGKSnLLdaldllarl 25
                + G  gsGKS+LL+++ +l + 
  CTQ26958.1 37 ILGSSGSGKSTLLRCMNWLEQP 58
                89*****************553 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 2.2e-09
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 lS G+k+  a++ +l+  +    ++l+DEp + L+P+l+ ++l+++k+l+++g   +++TH
  CTQ26958.1 150 LSGGQKQRVAIARSLAMSP---EVILFDEPTSALDPELVNEVLGVMKALAAEGYTMVVVTH 207
                 6778887777777777766...9************************************** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.3   6.4e-09   6.8e-06      25     206 ..      33     216 ..      19     225 .. 0.61

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 6.4e-09
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEE.......EEEEEEETTEE....SSSSSSCEEEEEEEETTSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkae.......veitfdnedkk....lkiekeevsisrrvkrkgeseyk 112
                  + +i+G+ GSGKs ll  + ++   +   ++     +  i + ++++++++ +       v ++f+  +      ++++ +e  ++++ ++ +    +
  CTQ26958.1  33 TVVSILGSSGSGKSTLLRCMNWLEQPDRG-EIHIGGQRLGIDE-QRGRAMSHRQlakirerVGMVFQSFNLWphltVQQNVSEALLRVKGMKRD----E 125
                 46789***************997554333.5555444444665.33444333330000000334443333322111122222222222222222....2 PP

                 ETTEEE-HHHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
       SMC_N 113 ingkevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekad 206
                  +   +++ e   + ++a++++ +LSgG+k+ va+a  +A+    p+ + l+De  +aLD + v++v  ++k+   +   ++v++++ ++ ++++
  CTQ26958.1 126 AKAMAMQQLEKVGMAHKADVYPITLSGGQKQRVAIARSLAMS---PE-VILFDEPTSALDPELVNEVLGVMKALAAEgYTMVVVTHEMDFARQVS 216
                 23334444444445556666666*************999875...44.679*********************88776588999999998887764 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.048        51      21      44 ..      37      60 ..      32      99 .. 0.80
   2 !   18.5   0.0   6.2e-07   0.00065     526     582 ..     167     220 ..     110     248 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.048
      AAA_13 21 iYGwNGaGKTtLSrllrslelget 44
                i G+ G+GK+tL r ++ le+   
  CTQ26958.1 37 ILGSSGSGKSTLLRCMNWLEQPDR 60
                77999*******999999876544 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 6.2e-07
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkntk 582
                   +++ +D P S LD + ++ v + +k+ +   ++   + + TH ++f ++v++++ 
  CTQ26958.1 167 SPEVILFDEPTSALDPELVNEVLGVMKALA---AEGYTMVVVTHEMDFARQVSNEVV 220
                 5789*************************9...666678899***********9764 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.1e-06    0.0012      19      43 ..      29      53 ..      17      63 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.1e-06
      AAA_29 19 idlkg.atlltGpsGsGKSTllDAiq 43
                ++ kg ++ + G sGsGKSTll  ++
  CTQ26958.1 29 VE-KGtVVSILGSSGSGKSTLLRCMN 53
                44.556899************96665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   3.8e-06     0.004      15     134 ..      29     163 ..      23     170 .. 0.83
   2 ?   -0.4   0.0      0.77   8.1e+02      38      66 ..     191     219 ..     188     232 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.8e-06
      AAA_30  15 tsgdrvavltGpAGtGKttalkalreaweaa.g...........grviglAptgkaAkvLaeelgieastiakllkrlk...grarlepgtllivDEag 98 
                  ++  v+ + G  G+GK+t+l+ ++ + + + g            +  g A ++++ ++++e +g+  ++ + + + +      ++l + + +  DEa 
  CTQ26958.1  29 VEKGTVVSILGSSGSGKSTLLRCMNWLEQPDrGeihiggqrlgiDEQRGRAMSHRQLAKIRERVGMVFQSFNLWPHLTVqqnVSEALLRVKGMKRDEAK 127
                 445569999**************99888887669*****999998999*****************966666666655555563345555588888**** PP

      AAA_30  99 mvdtkqlaallkaaekagakvilvGDerQlasVeaG 134
                  ++++ql+++  a +++   + l G ++Q  ++ + 
  CTQ26958.1 128 AMAMQQLEKVGMAHKADVYPITLSGGQKQRVAIARS 163
                 *********9998888889***********999876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.77
      AAA_30  38 lreaweaaggrviglAptgkaAkvLaeel 66 
                 + +a++a+g+++++++++   A+++++e+
  CTQ26958.1 191 VMKALAAEGYTMVVVTHEMDFARQVSNEV 219
                 56788999********9999999998765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     2e-06    0.0021      12      41 ..      24      54 ..       7      55 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2e-06
      AAA_23 12 dqeidF...skgltlItGpNGaGKTTildAikl 41
                d  i++   +  ++ I G  G+GK+T+l+++ +
  CTQ26958.1 24 D--INLtveKGTVVSILGSSGSGKSTLLRCMNW 54
                3..555664446889****************99 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.2e-06    0.0065      86     120 ..      18      53 ..       3      89 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.2e-06
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinall 120
                  + e l++++  +++  ++ ++G+SG GKStL+  ++
   CTQ26958.1  18 NVEVLRDINLTVEKgTVVSILGSSGSGKSTLLRCMN 53 
                  4466777777787768888************98776 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0018       1.9     240     264 ..      27      52 ..      18      54 .. 0.90
   2 ?    5.0   0.0    0.0083       8.8     324     352 ..     151     179 ..     144     199 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0018
                 EEE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAl 264
                 + + kG v+ I G+   GKsTLL+ +
  CTQ26958.1  27 LTVEKGtVVSILGSSGSGKSTLLRCM 52 
                 56889999***************976 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0083
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsA 352
                 SG   q ++i+++l +  +++L+DE tsA
  CTQ26958.1 151 SGGQKQRVAIARSLAMSPEVILFDEPTSA 179
                 89999***********************9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.4   2.3e-05     0.024      20      45 ..      30      53 ..      18     222 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.3e-05
      AAA_16 20 rsgrpelvllsGesGvGKsslvrell 45
                 +g   +v + G sG+GKs+l+r+  
  CTQ26958.1 30 EKG--TVVSILGSSGSGKSTLLRCMN 53
                444..6899*************9875 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.1e-05     0.023      23      50 ..      32      59 ..      10     195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.1e-05
                EEEEEEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha 23 evkllllGqseSGKsTilkqlkllykkg 50
                   + +lG+s+SGKsT+l+ +  l+++ 
  CTQ26958.1 32 GTVVSILGSSGSGKSTLLRCMNWLEQPD 59
                455889***************9998875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   0.00022      0.23       4      26 ..      31      53 ..      28     212 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00022
      AAA_22  4 tagilvvtGesGtGKTtllrrll 26
                + +++ + G sG+GK+tllr + 
  CTQ26958.1 31 KGTVVSILGSSGSGKSTLLRCMN 53
                5678899***********99653 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00063      0.66       2      18 ..      34      50 ..      33      58 .. 0.89
   2 ?    0.3   0.0      0.55   5.8e+02     135     163 ..     107     134 ..      97     136 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00063
                CEEEEC-TTTCHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlq 18
                +v + G +GsGK+tLl+
  CTQ26958.1 34 VVSILGSSGSGKSTLLR 50
                6889***********97 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.55
                 HCTTSSCE..EEEE--TCCHHHHHHHHCT CS
       NACHT 135 leeqleeaivlevegfsesrrkqlvrkyf 163
                 +++ ++ea  l v+g++++++k+++++ +
  CTQ26958.1 107 VQQNVSEA-LLRVKGMKRDEAKAMAMQQL 134
                 45666666.9***********99998765 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00019       0.2      26      42 ..      35      51 ..      12      55 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
       DUF87 26 lAilgsTGsGKSntvav 42
                + ilgs+GsGKS++ + 
  CTQ26958.1 35 VSILGSSGSGKSTLLRC 51
                68***********9876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1    0.0002      0.21       1      32 [.      34      74 ..      34     215 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
      AAA_33  1 lvllvGlpGsGKstlaerl..lkklg.......avllssdt 32
                +v + G +GsGKstl++ +  l++ +       +++l  d+
  CTQ26958.1 34 VVSILGSSGSGKSTLLRCMnwLEQPDrgeihigGQRLGIDE 74
                67789**********98543355554555555566666665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00054      0.57       6      39 ..      20      51 ..      16     218 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00054
    ATPase_2  6 kelkeleeilerepneiyfiYGpegsGKtaLlke 39
                + l++++  +e+   +++ i G+ gsGK++Ll+ 
  CTQ26958.1 20 EVLRDINLTVEK--GTVVSILGSSGSGKSTLLRC 51
                556777777776..78999************984 PP

>> ST7  ST7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00029      0.31     258     306 ..      75     120 ..      61     138 .. 0.88
   2 ?   -3.6   0.0       2.6   2.8e+03     368     401 ..     208     245 ..     196     246 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00029
         ST7 258 krrlamcarklgrlkeavkmlrdlikefpllsvlnihenlleallelqa 306
                 +r  am  r+l +++e v m+    + f l   l +++n+ eall ++ 
  CTQ26958.1  75 QRGRAMSHRQLAKIRERVGMV---FQSFNLWPHLTVQQNVSEALLRVKG 120
                 6778*************9996...789******************9875 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.6
         ST7 368 avefnPhvPkyl..lelksli..lPPehilkrGdseav 401
                  ++f   v + +  le   li   PPe ++ + dse v
  CTQ26958.1 208 EMDFARQVSNEVvfLEKGLLIekAPPEKFFTQPDSERV 245
                 55555555543311343334433499999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 2082.92
//
Query:       CTQ26959.1  [L=254]
Description: Sulfoacetaldehyde reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-47  160.8   0.0    3.2e-47  160.5   0.0    1.1  1  adh_short     short chain dehydrogenase
    1.3e-34  119.8   0.0    1.5e-34  119.6   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.7e-13   50.9   0.0    2.2e-13   50.5   0.0    1.1  1  KR            KR domain
     0.0031   17.0   0.0     0.0061   16.0   0.0    1.7  1  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   0.0   7.2e-51   3.2e-47       1     187 [.       5     192 ..       5     200 .. 0.96

  Alignments for each domain:
  == domain 1  score: 160.5 bits;  conditional E-value: 7.2e-51
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfselse 98 
                 +vv++tGa+sG+G a a+ +a +G+++v+ +r+  +l+++ + l + +  +++i++Dv+d+e+v a+v+   +++  +  L+nNAG+   + p++e+  
  CTQ26959.1   5 NVVFITGATSGFGEAAAQVFADAGWSLVLSGRRYPRLKALQDRLAA-RVPVHIIELDVRDSEAVAAAVASLPADFADITTLINNAGLaLSPLPAQEVAL 102
                 69***********************************999999887.699*************************************88899******* PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short  99 eewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 e+w+ +i++N+tg++ +t+a+lp+++  + +++I+n++S+ag+ p++g  +Y+AsKa+v++++ +l+ +l  tg+rv+ +aPG+ +T+++
  CTQ26959.1 103 EDWKTMIDTNVTGLVTVTHALLPTLIrHGAGASIINIGSIAGQWPYPGSHVYGASKAFVKQFSYNLRCDLLGTGVRVTDLAPGIAETEFT 192
                 **************************7777889******************************************************986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.0   3.4e-38   1.5e-34       1     189 [.      11     203 ..      11     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 3.4e-38
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   Ga sg G+a+A+ +a++G+++vl+ ++  + k+  ++la++++ +++e+DV+d e+v+a+v+ + ++f  +  l+nnag a +   p+ e+  e+++
    CTQ26959.1  11 GATSGFGEAAAQVFADAGWSLVLSGRRYPRlKALQDRLAARVPVHIIELDVRDSEAVAAAVASLPADFADITTLINNAGLALS-PLPAQEVALEDWK 106
                   999************************9998999999*********************************************9.99999******** PP

                   HHHHHHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT.HHHHH CS
  adh_short_C2  97 raldvnlyslfllakaalp.lmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg.fdell 189
                   +++d+n+++l+ +++a+lp l+++g  +si+n+ s++++   p+ ++yga+Ka +++++ +l  +l   g+Rv   +pg+ +T+ +   ++  ++  
    CTQ26959.1 107 TMIDTNVTGLVTVTHALLPtLIRHGagASIINIGSIAGQWPYPGSHVYGASKAFVKQFSYNLRCDLLGTGVRVTDLAPGIAETEFTLVRTKgDQAAS 203
                   *******************988888889*******************************************************99544433133333 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   4.9e-17   2.2e-13       3     160 ..       7     165 ..       5     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 4.9e-17
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE----.-----TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgv.lrdklleem 100
                 ++itG++ g+G + a+  a+ g  +lvl +R+ +   + kal ++l+a  + v+++++Dv d++av+a+++++ a+++ i+  i+ Ag+ l   + +e+
  CTQ26959.1   7 VFITGATSGFGEAAAQVFADAGW-SLVLSGRRYP---RLKALQDRLAA-RVPVHIIELDVRDSEAVAAAVASLPADFADITTLINNAGLaLSPLPAQEV 100
                 68****************99996.69******44...44444455554.799***********************************9725688999** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled.....esldffvlfSSiagllgsagqanYaaaNaflDala 160
                   ed+++++   v+G+  + ++l +          ++ + Siag +  +g   Y a  af+ ++ 
  CTQ26959.1 101 ALEDWKTMIDTNVTGLVTVTHALLPtlirhGAGASIINIGSIAGQWPYPGSHVYGASKAFVKQFS 165
                 ***************998877766645544777889************************99886 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.4e-06    0.0061       1     102 [.       7     123 ..       7     181 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.4e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHH....H.T-SEEEE--S..--...-HHHHHHS CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrsalerlfke....e.qpdavihlAa..vg...gvaassed 83 
                 +++tGat   G a ++ ++++g+ ++   r+ + + +a++++l      +++eld++d++a+++++++    + ++++ i+ A+   +     ++  ed
  CTQ26959.1   7 VFITGATSGFGEAAAQVFADAGWSLVLSGRR-YPRLKALQDRLaarvpvHIIELDVRDSEAVAAAVASlpadFaDITTLINNAGlaLSplpAQEVALED 104
                 68**********************8888887.44444444444799**************888877651111334455555555211111122344455 PP

                 HHHHHHHHTHHHHHHHHHH CS
   Epimerase  84 padfieknlqgtlnlleaa 102
                  + +i++n+ g +++ +a+
  CTQ26959.1 105 WKTMIDTNVTGLVTVTHAL 123
                 5556666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2197.62
//
Query:       CTQ26960.1  [L=445]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.3e-94  314.5   0.0    9.9e-94  314.3   0.0    1.0  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.3   0.0   5.5e-98   9.9e-94      10     404 ..      36     435 ..      28     437 .. 0.92

  Alignments for each domain:
  == domain 1  score: 314.3 bits;  conditional E-value: 5.5e-98
                  CEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHH CS
  Aminotran_3  10 llvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKla 107
                  +lvi  a+G+ l+d +g++ lD+ s+   vn+G++hP+v++a+k+q+++l+ +  +a++n    ++a+ +++lap g++kvf+ n+G++A+e+A+++a
   CTQ26960.1  36 PLVIAGAQGCELWDYEGNTWLDFSSQLVNVNIGYQHPRVLAAIKAQLETLVTIA-PATANLARGEAAKRIVDLAPAGFSKVFFTNAGADANENAIRMA 132
                  489999********************************************8887.******************************************* PP

                  HHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSE.EEE-TTBGGGTB-HHHHHHHHHHHHHHHH.CHTCCCEEEEEE-SCET CS
  Aminotran_3 108 rkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpev.vrlkypdeevlkeneeeeaalleeleale.kkkkdevaAvivEpiqg 203
                  r       +t + k+++   ++HG+t  a+++tg+   + ++f     ++     y  e+++ ++eee++++l  l++++  +    +aA+++E i+g
   CTQ26960.1 133 RL------YTGRDKVLSAYRSYHGNTGSAIAATGDWRRVPNEFSRGHVHFfNPYLYRSEFNAATEEEECQRALAHLRRIIeCEGPTAIAAILLESIPG 224
                  **......9**************************8888888877754441446677788888888999999999999995666778*********** PP

                  TTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTS..B--TTTT-HHHH CS
  Aminotran_3 204 egGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgs..hgsTfgGnplac 298
                   +G+ v+++++++++r+l+++ +++li DEv+ GfGrTG +fA e++gv pDl+t+aK++ +G  p+  vl  + +++ + +     g T++G pla+
   CTQ26960.1 225 TAGILVPPAGYMQGVRALADEFGIVLILDEVMAGFGRTGSWFAFEQDGVVPDLVTFAKGVNAGyVPAGGVLISEPIARYFDDHFfaGGLTYSGHPLAM 322
                  ***************************************************************99***************665577899********* PP

                  HHHHHHHHHHHHTTHHHHHHHHHHHHHH.HHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.......HHHHHHHHHCTEE-EEETTTEEEE---T CS
  Aminotran_3 299 avalavleiieeekllenaqelgaalke.gLeelqkkyevikevRgkGlmiaielkeeaevke.......keilkkakekGvlilsaGdnvirllppl 388
                  a+++a++++++eek++ena+ +g+++   gLe+l++k+  i+evRg+Gl+ a+el++++e+k+       ++i  ++ e+G+l   +  n i ++pp 
   CTQ26960.1 323 AAIVATIDAMKEEKVVENAASIGNEVLRpGLEALAEKHAIIGEVRGRGLFQALELVSSREQKTpltaadmAAIKGALTEAGLLAFVVE-NRIHVVPPC 419
                  **********************9875555*******************************8889***99877888999*****88887.********* PP

                  T--HHHHHHHHHHHHH CS
  Aminotran_3 389 iitdeeidelleilkk 404
                  +it+e+++++l i+ +
   CTQ26960.1 420 TITAEQVAQGLAIFDA 435
                  ***********99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3252.63
//
Query:       CTQ26961.1  [L=114]
Description: hypothetical protein CH1034_140106 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.48   10.7   1.7         18    5.6   0.1    2.2  2  Defensin_3  Defensin-like peptide family


Domain annotation for each model (and alignments):
>> Defensin_3  Defensin-like peptide family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.001        18       1      14 [.       2      15 ..       2      19 .. 0.87
   2 ?    4.4   0.1    0.0024        44       4      14 ..      44      54 ..      42      58 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.001
                S-SEECCCCT-EEE CS
  Defensin_3  1 frmrdCeSisGVCR 14
                + +  Ce +sG CR
  CTQ26961.1  2 HGPTGCEPVSGSCR 15
                66889********9 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0024
                EECCCCT-EEE CS
  Defensin_3  4 rdCeSisGVCR 14
                  Ce +sG CR
  CTQ26961.1 44 TGCEPVSGSCR 54
                67********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       155  (0.00864521); expected 358.6 (0.02)
Passed bias filter:                      105  (0.00585643); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 945.53
//
Query:       CTQ26962.1  [L=234]
Description: putative ATP-binding component of a transport system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-32  111.2   0.0    7.4e-32  110.7   0.0    1.2  1  ABC_tran     ABC transporter
      3e-14   53.6   1.2    4.1e-08   33.4   0.2    2.3  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    5.6e-06   26.9   0.4    7.8e-06   26.4   0.4    1.2  1  AAA_16       AAA ATPase domain
    4.7e-05   22.9   0.2    0.00062   19.3   0.2    2.0  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00062   20.2   0.0      0.069   13.6   0.0    2.2  1  AAA          ATPase family associated with various cellular a
    0.00088   19.6   0.2     0.0054   17.0   0.2    1.9  1  AAA_22       AAA domain
      0.002   18.1   0.1       0.45   10.5   0.0    2.2  2  AAA_5        AAA domain (dynein-related subfamily)
     0.0031   17.2   0.1     0.0059   16.3   0.1    1.4  1  AAA_29       P-loop containing region of AAA domain
     0.0033   18.0   0.0       0.25   11.9   0.0    2.1  2  AAA_18       AAA domain
      0.005   16.8   0.0     0.0088   16.0   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
     0.0072   15.9   0.0       0.59    9.7   0.0    2.3  2  AAA_25       AAA domain
  ------ inclusion threshold ------
      0.012   15.4   0.1       0.11   12.2   0.1    2.1  1  AAA_30       AAA domain
      0.018   15.3   0.1       0.06   13.6   0.0    1.9  2  AAA_28       AAA domain
      0.052   13.0   0.1        2.1    7.7   0.0    2.2  2  TniB         Bacterial TniB protein
      0.055   13.4   0.0      0.091   12.7   0.0    1.3  1  Rad17        Rad17 P-loop domain
      0.059   13.6   0.1       0.71   10.2   0.1    2.2  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
       0.14   11.8   0.0       0.27   10.9   0.0    1.4  1  AAA_15       AAA ATPase domain
       0.16   12.1   0.1       0.47   10.6   0.1    2.0  1  MMR_HSR1     50S ribosome-binding GTPase
       0.17   11.6   0.0       0.29   10.8   0.0    1.3  1  PRK          Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.0   7.9e-35   7.4e-32       3     137 .]      21     167 ..      19     167 .. 0.89

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 7.9e-35
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS..--S-TTSBHHHH........HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx..xxxxxxxxxxxx........xxxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqe..pqlfpeltvren........esdeeiekal 89 
                   s+ + +ge+  ++G +G+GKSt+l++lagl +   G++ l g+ +    +    lr+++++++q+  ++l p++t+ ++          ++ + ++ 
  CTQ26962.1  21 AASFRVDAGETFSLIGASGCGKSTILRVLAGLQREWRGSVDLLGQAIMPgaRFQGDLRRNVQMVFQDpyASLHPNHTLWRTlaeplqihGIRDVAPRVT 119
                 579********************************************998888899***********999*******9888999999884444455666 PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + l++++l+++ v++ p++LSgGq+qrva+arall +p++lllDEpt+
  CTQ26962.1 120 TALEQVGLAADAVRRYPHQLSGGQRQRVAIARALLLRPQILLLDEPTS 167
                 6666666777899999******************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.2e-06    0.0012       4      33 ..      34      60 ..      32      83 .. 0.78
   2 ?   -2.3   0.0       3.1     3e+03     262     273 ..      84      97 ..      77     106 .. 0.75
   3 !   33.4   0.2   4.4e-11   4.1e-08     188     302 ..     107     202 ..      96     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.2e-06
      AAA_21  4 liGpNgsGKSnLLdaldllarldrdveglt 33
                liG+ g+GKS++L+ l +l+r     +g+ 
  CTQ26962.1 34 LIGASGCGKSTILRVLAGLQRE---WRGSV 60
                9******************765...33333 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.1
      AAA_21 262 liDEpEngLHP..k 273
                 ++ +p ++LHP   
  CTQ26962.1  84 VFQDPYASLHPnhT 97 
                 788999*****542 PP

  == domain 3  score: 33.4 bits;  conditional E-value: 4.4e-11
      AAA_21 188 lvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkels 286
                  ++++++v +++++ +e++ l a++ +r                  +++lS G+++  a++ all ++    +ll+DEp + L+ ++++++l ll++l+
  CTQ26962.1 107 QIHGIRDVAPRVTTALEQVGLAADAVRR-----------------YPHQLSGGQRQRVAIARALLLRP---QILLLDEPTSALDMSVQAEILNLLNRLK 185
                 6788888888888888888888877777.................688*********9********99...9***********************7777 PP

      AAA_21 287 r.ngaQviltTHSplll 302
                 + +g   +l++H+  ++
  CTQ26962.1 186 QeHGMTYLLVSHDADVI 202
                 7699999*****98776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.4   8.3e-09   7.8e-06      19     165 ..      26     190 ..      16     196 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 8.3e-09
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekd.........ggiflrgkcdql.esaipy...salaqalareellrqlldeaesaeleawrekleea 104
                 v +g  e   l+G+sG+GKs+++r l+  l+++          +i   ++++   ++++ +   +++a++  +++l r l+++++    ++ + + ++a
  CTQ26962.1  26 VDAG--ETFSLIGASGCGKSTILRVLA-GLQREwrgsvdllgQAIMPGARFQGDlRRNVQMvfqDPYASLHPNHTLWRTLAEPLQIHGIRDVAPRVTTA 121
                 4445..67899************9999.67777777788885355533333333345566677667*******************99*******99999 PP

      AAA_16 105 laavpelagaea.........srllellkrllallsrderplvlvlDdlqwadeaslql.laaLlrlles...k 165
                 l++v+ +a+a +         +r + +++r+l l     rp +l+lD+   a ++s q+ + +Ll +l++    
  CTQ26962.1 122 LEQVGLAADAVRryphqlsggQRQRVAIARAL-L----LRPQILLLDEPTSALDMSVQAeILNLLNRLKQehgM 190
                 99444333333355545546666666666666.2....346799999999999999999988888887774432 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   6.6e-07   0.00062      28     207 ..      33     207 ..      18     218 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 6.6e-07
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsel 126
                 +++G+ G+GKs +l  +    G +       + l + i   ++ +   + +v+++f+++ ++l+ ++   ++ r++        +i g +     v+  
  CTQ26962.1  33 SLIGASGCGKSTILRVL---AGLQREWRGSVDLLGQAIMPGARFQGDLRRNVQMVFQDPYASLHPNH---TLWRTL----AEPLQIHGIRDVAPRVTTA 121
                 46788888888887766...55444433334445555555667777777788888888887733333...333333....2334455555555555555 PP

                 HHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SC CS
                 xxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
       SMC_N 127 lesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadk 207
                 le++g+  +       +LSgG+++ va+a  +     +p+ + llDe  +aLD +  +++ +ll++ +++  + ++ +s++++++++++ 
  CTQ26962.1 122 LEQVGLAADavrryphQLSGGQRQRVAIARAL---LLRPQ-ILLLDEPTSALDMSVQAEILNLLNRLKQEhgMTYLLVSHDADVIAHMSD 207
                 6666665556666666********99998654...34555.779********************96665545999******999998854 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   7.3e-05     0.069       3     113 ..      34     200 ..      32     214 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.3e-05
                 EESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSS.............................................................. CS
         AAA   3 lyGppGtGKTllakavakelg..vefleisgsellsk.............................................................. 37 
                 l+G  G+GK+++ + +a      +  + + g  ++                                                                
  CTQ26962.1  34 LIGASGCGKSTILRVLAGLQRewRGSVDLLGQAIMPGarfqgdlrrnvqmvfqdpyaslhpnhtlwrtlaeplqihgirdvaprvttaleqvglaadav 132
                 89***************9953322223333333331122112222222333333444444444555555555555555555555666666555555555 PP

                 ..STTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGG CS
         AAA  38 ..yvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpd 113
                   y  + +   r+ ++ a++   +p il++DE  +    +          v++++l+ l+++k++ + ++ ++++++ d
  CTQ26962.1 133 rrYPHQLSGGQRQRVAIARALLlRPQILLLDEPTSALDMS----------VQAEILNLLNRLKQE-HGMTYLLVSHDAD 200
                 5555666666666665555555667777777777666666..........677777777777664.3366666666655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   5.8e-06    0.0054      10     128 ..      34     195 ..      29     200 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.8e-06
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee...............................erpevvfvtlpsstsskdllrellralglelka....... 70 
                 ++G sG+GK+t lr l+    e+    +                               ++ +++             +r l++ l+  + +       
  CTQ26962.1  34 LIGASGCGKSTILRVLAGLQREWRGSVDllgqaimpgarfqgdlrrnvqmvfqdpyaslHPNHTL-------------WRTLAEPLQIHGIRdvaprvt 119
                 89****************99888776669999999999999999855555555555555444444.............444444444444444444444 PP

      AAA_22  71 ...............erlsseellealeqalrarav.........ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                                ++++++   ++         v         +++l++DE    l+   ++e+l+ L +l    ++g++ +Lv
  CTQ26962.1 120 taleqvglaadavrrYPHQLSGGQRQR--------VaiaralllrPQILLLDEPTSaLDmsvQAEILNLLNRLKQ--EHGMTYLLV 195
                 444444444666655222222222222........123333355778******9998988555999999999888..888887776 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00048      0.45       4      22 ..      34      52 ..      31      82 .. 0.88
   2 ?    5.9   0.0     0.013        12      64     120 ..     144     205 ..     103     220 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00048
                EE--SSSSHHHHHHHGGGG CS
       AAA_5  4 LvGppGtgKselaerlaaa 22
                L+G++G+gKs++ + la +
  CTQ26962.1 34 LIGASGCGKSTILRVLAGL 52
                9*************99976 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.013
                 -...........G-SEEEEESGGG--.HHHHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEE CS
       AAA_5  64 r...........egeilvlDEverae.sevlnsLlslleerrllleeggelvkaknddllerfrviata 120
                 r           +++il+lDE + a   +v+++ l+ll++ +     g ++  ++ d       via +
  CTQ26962.1 144 RqrvaiaralllRPQILLLDEPTSALdMSVQAEILNLLNRLKQE--HGMTYLLVSHD-----ADVIAHM 205
                 04444444556899*********99989**********965443..55555555544.....4555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   6.3e-06    0.0059      15      39 ..      22      46 ..      16      53 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.3e-06
      AAA_29 15 htieidlkgatlltGpsGsGKSTll 39
                 ++++d  +++ l+G+sG GKST+l
  CTQ26962.1 22 ASFRVDAGETFSLIGASGCGKSTIL 46
                56788866699*************8 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00027      0.25       3      44 ..      34      75 ..      33     108 .. 0.71
   2 ?    4.2   0.0     0.063        60      49      92 ..     166     207 ..     147     218 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00027
      AAA_18  3 ltGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpe 44
                l G++G+GK+t+ + L+ +    ++ + d++ +  +   +++ 
  CTQ26962.1 34 LIGASGCGKSTILRVLAGLQ-ReWRGSVDLLGQAIMPGARFQG 75
                68**************5442.2266666666666666666666 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.063
      AAA_18  49 skrldedkldklldaleenssaleegknlvidghlaeleseaak 92 
                 +  ld+ +++++l++l++    +e+g ++++ +h a+ + ++  
  CTQ26962.1 166 TSALDMSVQAEILNLLNRLK--QEHGMTYLLVSHDADVIAHMSD 207
                 67889999**********96..59***********999888655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.3e-06    0.0088      94     123 ..      23      53 ..       3      62 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.3e-06
                  HHHCTT.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  94 kellkd.ktsvlvGqSGvGKStLinallpel 123
                  + +++  +t  l+G SG GKSt++ +l++ +
   CTQ26962.1  23 SFRVDAgETFSLIGASGCGKSTILRVLAGLQ 53 
                  45555449999***************99854 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00062      0.59      31      54 ..      27      50 ..      23      54 .. 0.88
   2 ?    3.7   0.0     0.041        39     165     188 ..     173     197 ..     157     199 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00062
      AAA_25 31 pagelallaGapgtGKttlaldla 54
                 age+  l+Ga+g+GK+t++  la
  CTQ26962.1 27 DAGETFSLIGASGCGKSTILRVLA 50
                7899999***********987665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.041
      AAA_25 165 v.galvealeriarrtgaavllvhH 188
                 v +++++ l+r+++++g + llv H
  CTQ26962.1 173 VqAEILNLLNRLKQEHGMTYLLVSH 197
                 35789999***************** PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00012      0.11      20     112 ..      31     181 ..      17     201 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa................................................eelgiea 70 
                 +  l G+ G GK+t+l++l+ + ++  g+v +l       ++ +                                                e++g++a
  CTQ26962.1  31 TFSLIGASGCGKSTILRVLAGLQREWRGSVDLLGQAIMPGARFQgdlrrnvqmvfqdpyaslhpnhtlwrtlaeplqihgirdvaprvttalEQVGLAA 129
                 56689**************99999886566555544444444443333666666666666666666666666666666666666666666666888888 PP

      AAA_30  71 stiakllkrlk.........grarlepgtllivDE.agmvdtkqlaallkaa 112
                 + + ++ ++l          +ra l + ++l+ DE ++ +d++  a++l+ +
  CTQ26962.1 130 DAVRRYPHQLSggqrqrvaiARALLLRPQILLLDEpTSALDMSVQAEILNLL 181
                 8888888887788888887755666666888888833444665555555444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.4e-05      0.06       3      23 ..      33      55 ..      31      76 .. 0.84
   2 ?   -1.5   0.0       2.8   2.7e+03      14      43 ..     101     131 ..     100     173 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.4e-05
      AAA_28  3 vitGgestGKTtlleaLa..arg 23
                 ++G++++GK+t+l+ La  +r+
  CTQ26962.1 33 SLIGASGCGKSTILRVLAglQRE 55
                58***************944333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.8
      AAA_28  14 tlleaLaargypvv.pEaareileeklakge 43 
                 tl+e L+ +g++ v p++ + + + +la + 
  CTQ26962.1 101 TLAEPLQIHGIRDVaPRVTTALEQVGLAADA 131
                 6666677777665535555555544444433 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.06        57      38      54 ..      32      48 ..      25      59 .. 0.84
   2 ?    7.7   0.0    0.0022       2.1     118     162 ..     155     197 ..     131     210 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.06
        TniB 38 lllvGdsnnGKtmivek 54
                  l+G s +GK++i++ 
  CTQ26962.1 32 FSLIGASGCGKSTILRV 48
                5699**********985 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0022
        TniB 118 lkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGt 162
                 l++++L++DE  ++l   ++ q e+ln+l +L++e  ++  lv  
  CTQ26962.1 155 LRPQILLLDEPTSAL--DMSVQAEILNLLNRLKQEHGMTYLLVSH 197
                 6789***********..777899**********999888777755 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.6e-05     0.091      47      66 ..      31      50 ..      14      64 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.6e-05
       Rad17 47 iLLisGPsGCgkstvvkvLs 66
                   + G sGCgkst+++vL+
  CTQ26962.1 31 TFSLIGASGCGKSTILRVLA 50
                55678*************98 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00075      0.71      63      89 ..     156     182 ..     118     183 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00075
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                 ++++++LDE  s lD   +a++l+ll+
  CTQ26962.1 156 RPQILLLDEPTSALDMSVQAEILNLLN 182
                 4899*******************9986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00029      0.27      17      43 ..      24      49 ..      20      55 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
      AAA_15 17 veidlseeltvliGkNnsGKSsileal 43
                + +d  e +  liG+ ++GKS+il++l
  CTQ26962.1 24 FRVDAGE-TFSLIGASGCGKSTILRVL 49
                5567777.889*************998 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00049      0.47       3      21 ..      33      51 ..      31     226 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00049
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                 ++G +  GKSt+++ l g
  CTQ26962.1 33 SLIGASGCGKSTILRVLAG 51
                69**************987 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00031      0.29       3      74 ..      33     102 ..      32     110 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00031
         PRK   3 gvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleerkrakekevsflspeandfdll 74 
                 ++ g+SG+Gk+t+ r l   ++re+  ++   g++++   r++ dl+ +  +  ++  +  l p+   +  l
  CTQ26962.1  33 SLIGASGCGKSTILRVLAG-LQREWRGSVDLLGQAIMPGARFQGDLRRN-VQMVFQDPYASLHPNHTLWRTL 102
                 5789**********99876.56699998999999998888888888744.4455556666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1685.02
//
Query:       CTQ26963.1  [L=278]
Description: nickel transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-22   80.0   0.0      3e-22   79.6   0.0    1.1  1  ABC_tran      ABC transporter
    1.9e-05   25.2   0.4    3.3e-05   24.4   0.4    1.3  1  AAA_16        AAA ATPase domain
    0.00012   21.5   0.1     0.0022   17.5   0.1    2.1  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00024   21.4   0.9     0.0038   17.5   0.9    2.2  1  AAA_22        AAA domain
    0.00028   20.8   0.1     0.0092   15.8   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0021   17.5   0.0     0.0054   16.1   0.0    1.6  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
     0.0033   17.3   0.5       0.13   12.1   0.0    2.9  2  NACHT         NACHT domain
  ------ inclusion threshold ------
      0.032   14.0   0.0       0.32   10.7   0.0    2.1  2  IstB_IS21     IstB-like ATP binding protein
      0.063   13.4   0.1       0.12   12.4   0.1    1.4  1  DUF87         Helicase HerA, central domain
      0.069   13.1   0.1       0.18   11.7   0.0    1.7  2  RsgA_GTPase   RsgA GTPase
      0.087   11.9   0.1       0.15   11.1   0.0    1.4  2  AnmK          Anhydro-N-acetylmuramic acid kinase
       0.11   12.9   0.1       0.39   11.1   0.1    2.1  1  AAA           ATPase family associated with various cellular 
       0.15   12.2   0.8       0.44   10.7   0.4    1.9  2  AAA_33        AAA domain
       0.16   11.8   0.0       0.32   10.8   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   2.4e-25     3e-22       2     137 .]      22     177 ..      21     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 2.4e-25
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx........... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren........... 79 
                 +nvs++l  +e++a+vGe+G+GKS  +++l+gl+++     ++++++ g+d+ +      +    + i+++ q+    l+p  t++++           
  CTQ26963.1  22 DNVSFTLG-NERLALVGESGSGKSMTARALMGLVRKpgvvSAERLEVLGRDVLTlsarGWRALRGNDIAMVLQDprYALNPVQTIQTQleealtlhqrl 119
                 89999997.689**********************987777777778888888889997777888899*******8878999999999999****99998 PP

                 HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  +++++e++ + +  ++l+  v+++ p +LSgG+ qrv++a all++pk+l++DEpt+
  CTQ26963.1 120 SRRARAEAVKDAIAAVGLDLPVLSRYPGELSGGMGQRVMIALALLNNPKVLIADEPTS 177
                 666677777777777777779999999*****************************96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.4   2.5e-08   3.3e-05      25     136 ..      31     201 ..      18     215 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.5e-08
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesa.ipysa.laqalareellrqllde..aesaeleawrekleeala............. 106
                 e + l+GesG+GKs  +r+l+  ++k  g++ +++ + l+++ +++sa  ++al r   ++ +l++   + + ++  +++leeal+             
  CTQ26963.1  31 ERLALVGESGSGKSMTARALMGLVRKP-GVVSAERLEVLGRDvLTLSArGWRAL-RGNDIAMVLQDprYALNPVQTIQTQLEEALTlhqrlsrraraea 127
                 56789****************766666.99999999999777577888899999.66888888888453333556666666666668888888888888 PP

      AAA_16 107 ...........................................avpelagaeasrllellkrll.allsrderp 136
                                                            +++e ++a+  rl++++ +ll +++++++  
  CTQ26963.1 128 vkdaiaavgldlpvlsrypgelsggmgqrvmialallnnpkvlIADEPTSALDARLRNQILELLvEQCAQRQMA 201
                 88888899999999999888888888888888888888888776666666666888888888888888876654 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   1.7e-06    0.0022      24     213 ..      30     224 ..      20     229 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.7e-06
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTT.TTTCHCCCCCC--.....BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersak.klrseklsdlihk.....skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingk 116
                 ++  a+vG+ GSGKs    A+   +G   +   + +e+l+ l         +  +++   +++++++++  +    ++  +i++++++  + + ++  +
  CTQ26963.1  30 NERLALVGESGSGKSMTARAL---MGLVRKPgVVSAERLEVLGRDvltlsARGWRALRGNDIAMVLQDPRYA---LNPVQTIQTQLEEALTLHQRL-SR 121
                 556678899999999888888...443322202333333322222333335555666667788887777666...444445555555555544444.34 PP

                 EE-HHHHHHHHHCTT-STT.......CS-H..HHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE..EEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxx.......xxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx RF
       SMC_N 117 evtkkevsellesagiske.......lLSg..GektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf..ivislreemlek 204
                 +++ + v++ ++ +g++         +LSg  G++ ++alaLl      +p+ + + De  +aLD++ ++++ ell e+  + Q+  + is++  +++ 
  CTQ26963.1 122 RARAEAVKDAIAAVGLDLPvlsrypgELSGgmGQRVMIALALL-----NNPK-VLIADEPTSALDARLRNQILELLVEQCAQRQMamLLISHDLPLVAA 214
                 5677777777777777777555555577873346777777777.....4555.5678********************9988877522778887776654 PP

                 -.SCEEEEEE CS
                 x.xxxxxxxx RF
       SMC_N 205 a.dklvgvtk 213
                   d+++ +++
  CTQ26963.1 215 HcDRVLVMYQ 224
                 4365555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.9     3e-06    0.0038       8     125 ..      33     202 ..      29     211 .. 0.55

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.....erpevv...fvtlpsstsskdl.lrellralglelka........................... 70 
                 l+++GesG+GK++++r l+    +           er ev+     tl++  +++ l  ++++  l++++ a                           
  CTQ26963.1  33 LALVGESGSGKSMTARALMGLVRK-----PgvvsaERLEVLgrdVLTLSAR-GWRALrGNDIAMVLQDPRYAlnpvqtiqtqleealtlhqrlsrrara 125
                 689***************998731.....1334455555556533333333.47777556777777777777666666555555555555444544444 PP

      AAA_22  71 ...................erlsseell.ealeqalraravielliiDEaqh.lr...seealeeLrsllnlsrkgvql 125
                                    ++++++  + +++  al     +++li DE    l+   ++++le L++     + ++++
  CTQ26963.1 126 eavkdaiaavgldlpvlsrYPGELSGGMgQRVMIALALLNNPKVLIADEPTSaLDarlRNQILELLVEQCA--QRQMAM 202
                 44445555555555555443333333333444444444444566666665555544333555555555555..555555 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.051        65       3      21 ..      34      52 ..      33      72 .. 0.86
   2 !   15.8   0.0   7.2e-06    0.0092     235     301 ..     147     212 ..     111     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.051
      AAA_21  3 vliGpNgsGKSnLLdaldl 21
                +l+G  gsGKS   +al +
  CTQ26963.1 34 ALVGESGSGKSMTARALMG 52
                79*********99988854 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 7.2e-06
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHS.pll 301
                  elS G+ +   +++all  +   ++l+ DEp + L+ +l   +lell ++++++    +l +H+ pl+
  CTQ26963.1 147 GELSGGMGQRVMIALALLNNP---KVLIADEPTSALDARLRNQILELLvEQCAQRQMAMLLISHDlPLV 212
                 567777766645555566555...8***********************9*****888889999996654 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.2e-06    0.0054      20      57 ..      28      67 ..      17      79 .. 0.84
   2 ?   -2.7   0.0       2.5   3.2e+03     179     198 ..     143     162 ..     130     168 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.2e-06
  Mg_chelatase 20 aGgHnlllvGppGsGKtmlakrlpsll..pplseeealev 57
                   G+  l lvG +GsGK+m a++l++l+  p + ++e lev
    CTQ26963.1 28 LGNERLALVGESGSGKSMTARALMGLVrkPGVVSAERLEV 67
                  588999*******************984455677777776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.5
  Mg_chelatase 179 erYlsklsgplldRidlqve 198
                   +rY   lsg +  R+ + ++
    CTQ26963.1 143 SRYPGELSGGMGQRVMIALA 162
                   68999999999999988766 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0    0.0001      0.13       3      28 ..      33      58 ..      31      81 .. 0.87
   2 ?    2.5   0.1     0.098   1.2e+02     110     131 ..     233     254 ..     103     268 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
                EEEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT  3 vilqGeaGsGKTtLlqklalawaegk 28
                ++l Ge+GsGK++ ++ l+ + +++ 
  CTQ26963.1 33 LALVGESGSGKSMTARALMGLVRKPG 58
                789***************98887765 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.098
                 HHHHCTTTTT--EEEEEEECCC CS
       NACHT 110 selirkkllpeasllltvrpra 131
                 ++ ++ +  p ++ l+t+rp+a
  CTQ26963.1 233 ARALPSATHPYTRTLWTCRPNA 254
                 3444555556666677777766 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00025      0.32      40      67 ..      23      50 ..      11      76 .. 0.86
   2 ?    0.8   0.0      0.27   3.5e+02     101     143 ..     159     200 ..     153     215 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00025
   IstB_IS21 40 tlsfiekkenivllGpsGvGKshlaial 67
                + sf+  +e ++l+G sG GKs  a al
  CTQ26963.1 23 NVSFTLGNERLALVGESGSGKSMTARAL 50
                67899999*****************998 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.27
   IstB_IS21 101 ralkrllkvdllilDdlgllpldqaeaellfeviekryerrsi 143
                  al+ l ++++li D+  +  ld   +++++e++ ++  +r +
  CTQ26963.1 159 IALALLNNPKVLIADEP-TSALDARLRNQILELLVEQCAQRQM 200
                 56777889999999996.5789999999999998776665544 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   9.7e-05      0.12      24      44 ..      31      51 ..      26      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.7e-05
       DUF87 24 rHlAilgsTGsGKSntvavLl 44
                ++lA +g++GsGKS t++ L+
  CTQ26963.1 31 ERLALVGESGSGKSMTARALM 51
                689***************997 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.18      79     121 ..      10      52 ..       3      70 .. 0.83
   2 ?   -2.6   0.0       3.5   4.5e+03      13      45 ..     195     226 ..     184     230 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
                  EEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  79 vllvsaktkegleelkellkdktsvlvGqSGvGKStLinallp 121
                   l+v+  t + +++++  l ++  +lvG+SG GKS    al++
   CTQ26963.1  10 GLAVDYPTARVVDNVSFTLGNERLALVGESGSGKSMTARALMG 52 
                  5667777888999**********************88877765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.5
                  EES--EEEEEEESTTTT--HHHHHHHHHHHHHT CS
  RsgA_GTPase  13 vaNvdqllivvslkepelslnlldrfLvlaeek 45 
                  +a  + +++++s +   l     dr+Lv+++ +
   CTQ26963.1 195 CAQRQMAMLLISHD-LPLVAAHCDRVLVMYQGR 226
                  55555566666666.555566778888877655 PP

>> AnmK  Anhydro-N-acetylmuramic acid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.2     4e+03      47      75 ..     100     129 ..      59     135 .. 0.63
   2 ?   11.1   0.0   0.00012      0.15       2      85 ..     144     228 ..     143     255 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.2
                 HTSS--BSHHHHHHHHHHHHHH.HHHHHHH CS
        AnmK  47 dllqggaatlkalgeldqelgl.lfadavn 75 
                 + +q+ +++l+++ +l q+l++ + a+av+
  CTQ26963.1 100 NPVQTIQTQLEEALTLHQRLSRrARAEAVK 129
                 344555566666666666665413455554 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00012
                 EEEEEE--TT-SEEEEEEEEESS.SEEEEEEEEEE--HHHHHHHHHTSS--BSHHH.HHHHHHHHHHHHHHHHHHHHHHHTT--G CS
        AnmK   2 lyiGlmsGtslDgvdivlvdleeakvellashlfpipedlreklldllqggaatlk.algeldqelgllfadavnellqkqelka 85 
                 +y G +sG     v i+l+ l++ kv  + + +++++++lr+++l+ll  + a+ + a+  ++++l l+ a++ + l+  q  + 
  CTQ26963.1 144 RYPGELSGGMGQRVMIALALLNNPKVLIADEPTSALDARLRNQILELLVEQCAQRQmAMLLISHDLPLVAAHCDRVLVMYQGRQV 228
                 677889999999999********999999999**************998876654415667799999999999888887665544 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1    0.0003      0.39       2      32 ..      34      65 ..      33     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
                EEESSTTSSHHHHHHHHHHHHT.HEEEEEETT CS
         AAA  2 llyGppGtGKTllakavakelg.vefleisgs 32
                 l+G  G GK+++a+a++  +    +++ +  
  CTQ26963.1 34 ALVGESGSGKSMTARALMGLVRkPGVVSAERL 65
                599**************998631222333333 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4   0.00034      0.44       4      33 ..      35      91 ..      33     143 .. 0.56
   2 ?   -2.0   0.0       2.8   3.6e+03      59      87 ..     191     199 ..     157     223 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00034
      AAA_33  4 lvGlpGsGKstlaerl...lkklg......avllssdt..................l 33
                lvG +GsGKs  a+ l   ++k g       ++l  d+                  +
  CTQ26963.1 35 LVGESGSGKSMTARALmglVRKPGvvsaerLEVLGRDVltlsargwralrgndiamV 91
                89************9955555555666555666777774444444333333333331 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.8
      AAA_33  59 lnelarkalsagrnvildatnlsrrerar 87 
                 l   ++                 ++++++
  CTQ26963.1 191 L---VE-----------------QCAQRQ 199
                 2...22.................222222 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00025      0.32      17      37 ..      26      45 ..      19      54 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00025
      AAA_29 17 ieidlkg.atlltGpsGsGKST 37
                +++   +    l+G+sGsGKS 
  CTQ26963.1 26 FTLG--NeRLALVGESGSGKSM 45
                4444..33699**********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2118.08
//
Query:       CTQ26964.1  [L=277]
Description: D-ala-D-ala transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-29  102.3   9.7    2.5e-29  102.3   9.7    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne
    8.8e-12   44.8   1.2    8.8e-12   44.8   1.2    2.8  4  OppC_N        N-terminal TM domain of oligopeptide transport 


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.5      0.18   1.6e+03     158     173 ..      19      34 ..       6      39 .. 0.49
   2 !  102.3   9.7   2.8e-33   2.5e-29       1     181 [.      94     274 ..      94     276 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.18
  BPD_transp_1 158 vlalviavlllnlvad 173
                    l+lvi+++l  l+a 
    CTQ26964.1  19 GLTLVILLVLTALFAP 34 
                   2333333333333333 PP

  == domain 2  score: 102.3 bits;  conditional E-value: 2.8e-33
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g+l+Gil++ +++++l ++l+++++v++s+P ++la+ +v        lg +    +++l+l+++++y+r  r+++ r + +d+  aa++lG +  +
    CTQ26964.1  94 GLLVGILSG-YYGGWLERILMRFTDVVMSMPRLILAFAFV------AMLGPGLVNgALALALTTWPAYARQARSEIQRLRHSDYLAAAEMLGIRGGR 183
                   799******.******************************......8899777777***************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqrlldp 181
                   +++ ++lP+ lp++i  l+l ++g++ +a+ l flg    lg +   a++g +++ ++          +++ +a+++a l++nl+ d l ++l+p
    CTQ26964.1 184 LLVGHILPLCLPSAIVRLALDLAGIILAAAGLGFLG----LGARPPMAEWGAMIADGMqvifdqwwiaAIPGAAILLASLAFNLLGDGLRDILEP 274
                   ************************************....*****************************************************98 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   1.2   9.8e-16   8.8e-12       6      51 .]       6      53 ..       2      53 .. 0.93
   2 ?   -2.7   0.0      0.67     6e+03      18      24 ..      80      86 ..      63     100 .. 0.58
   3 ?   -0.5   0.3      0.14   1.2e+03      23      36 ..     126     139 ..     125     157 .. 0.79
   4 ?   -3.9   0.2       1.7   1.5e+04      20      26 ..     252     258 ..     247     266 .. 0.54

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 9.8e-16
      OppC_N  6 awrrFkrNklAvvglvilllllliaifaPliaPydp..qdliqnllpP 51
                ++rr++r ++A+ gl +++ll+l a+faP++aP+dp  qd  ++l++P
  CTQ26964.1  6 FLRRLRRSPAAFSGLTLVILLVLTALFAPWLAPHDPnwQDAAARLQGP 53
                79**********************************998887889998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.67
      OppC_N 18 vglvill 24
                +glv l+
  CTQ26964.1 80 LGLVALV 86
                3444443 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.14
      OppC_N  23 lllllliaifaPli 36 
                 +l+++++a ++P +
  CTQ26964.1 126 ILAFAFVAMLGPGL 139
                 66777888888887 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 1.7
      OppC_N  20 lvillll 26 
                  +ill+ 
  CTQ26964.1 252 AAILLAS 258
                 4444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2308.87
//
Query:       CTQ26965.1  [L=340]
Description: D-ala-D-ala transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-42  144.3   9.2    3.3e-42  144.3   9.2    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.13   11.8   0.5       0.34   10.4   0.5    1.6  1  DUF3169       Protein of unknown function (DUF3169)
        3.7    7.2   5.1         21    4.8   0.0    3.0  3  SLC3A2_N      Solute carrier family 3 member 2 N-terminus


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1     0.064   3.8e+02      16      43 ..       8      35 ..       2     117 .. 0.66
   2 !  144.3   9.2   5.6e-46   3.3e-42       1     184 [.     119     340 .]     119     340 .] 0.99

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.064
  BPD_transp_1 16 ldkllrpliivllslPsfvlaillvlvf 43
                  l++ll++l+ +ll+l  ++l+ + + ++
    CTQ26965.1  8 LTRLLQGLFTLLLTLFGLLLVTFSLSAL 35
                  4556666666666666666555544333 PP

  == domain 2  score: 144.3 bits;  conditional E-value: 5.6e-46
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.......................................vilsilghlilpvii 58 
                   gi++G+l+a++ ++++d ++r+++ ++ s+P+f+l++l++++f                                       ++++++ghl+lpv++
    CTQ26965.1 119 GIVAGVLCARYAGSPWDLAVRTFTLLGNSVPIFWLGLLMLALFyarlqwapgpgrlddiyqytveprsgfalidtwlsgdtaAFKNAIGHLALPVLV 215
                   89*********************************************************************************************** PP

  BPD_transp_1  59 llllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisn 155
                   l+ +s+a ++rl+r+a l++++k+++ +ara+Ga++ +i+ ++vlPn+  +++t  +la++++l gavl+e+++swpG+g+ l++a+ + d+++i+ 
    CTQ26965.1 216 LAYYSLASITRLTRSACLSEMNKEYILLARAKGAGEMTILLRHVLPNIRGTLLTVTALAWTSMLEGAVLTETVFSWPGIGRYLTTALFAGDTTAIM- 311
                   ************************************************************************************************. PP

  BPD_transp_1 156 ggvlalviavlllnlvadilqrlldprvr 184
                   gg+l ++++++l+n ++d+l+rl dprvr
    CTQ26965.1 312 GGTLLIGVSFVLINNLTDLLVRLTDPRVR 340
                   ***************************97 PP

>> DUF3169  Protein of unknown function (DUF3169)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   5.7e-05      0.34       8      62 ..     105     159 ..     100     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.7e-05
     DUF3169   8 illmliggliGgiiGfllgafeaekgleelsaalkelllligskilpllliiavl 62 
                 + l +++ ++G+++G + g+++a++  +    a++++ ll +s+ + +l +++++
  CTQ26965.1 105 LELATLALIVGAVLGIVAGVLCARYAGSPWDLAVRTFTLLGNSVPIFWLGLLMLA 159
                 6678899*********************************999777777765444 PP

>> SLC3A2_N  Solute carrier family 3 member 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.17     1e+03      43      64 ..     107     128 ..      96     134 .. 0.78
   2 ?    2.6   0.9     0.016        98      23      54 ..     128     161 ..     125     166 .. 0.80
   3 ?    4.8   0.0    0.0035        21      33      54 ..     263     284 ..     261     288 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.17
    SLC3A2_N  43 lvwlgmLvgaiviivqapkCkp 64 
                 l+ l+++vga++ iv    C+ 
  CTQ26965.1 107 LATLALIVGAVLGIVAGVLCAR 128
                 56688999**999998888865 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.016
    SLC3A2_N  23 klandPfWvrvRwllli..lfwlvwlgmLvgaiv 54 
                 ++a+ P+ + vR + l+     + wlg+L+ a++
  CTQ26965.1 128 RYAGSPWDLAVRTFTLLgnSVPIFWLGLLMLALF 161
                 69999*9999999877633567889999998875 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0035
    SLC3A2_N  33 vRwlllilfwlvwlgmLvgaiv 54 
                 +R +ll +  l+w+ mL ga++
  CTQ26965.1 263 IRGTLLTVTALAWTSMLEGAVL 284
                 78999999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2602.74
//
Query:       CTQ26966.1  [L=522]
Description: putative ABC transport system periplasmic binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-68  228.8   6.5    1.2e-67  228.5   6.5    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.5   6.5   6.9e-72   1.2e-67       1     373 [.      70     437 ..      70     441 .. 0.94

  Alignments for each domain:
  == domain 1  score: 228.5 bits;  conditional E-value: 6.9e-72
                 SEEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC.....TCTEEEEEEEETTEEEEEESSETT..TTTTH CS
   SBP_bac_5   1 evvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee.....dqdikkveavddytvrftlkkpna..lfltl 92 
                 ++vp LAes w+ ++ +kt+t+kL++++kF+ G+pl  eDv+fs+ r++  + ++    +  +     d+     ++vdd+t++++ ++  +   +l++
  CTQ26966.1  70 KIVPILAES-WQADPAAKTLTIKLKPDAKFASGNPLRPEDVIFSYTRAVTLNKSPAFILN--VlgwqpDNIASQLKKVDDHTLTLHWTADVSpaVALNI 165
                 69*******.799***********************************999888866444..234799**********************776679999 PP

                 CHHHHHHHGC.....CHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTT.SCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCT CS
   SBP_bac_5  93 laavpasiak.....kaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgg.gkpkldriefkvipdsdaraaalqsGeiddvaepppsd 185
                 l+ ++asi       ++a+++d  +++ + +  g+G+Yk+  ++p q ivle+n     + g+pk+++i++k +pd+++r++  q+G++d++ ++ +++
  CTQ26966.1 166 LSTPIASILDekqvaPNAKNNDFGNDWLKMHSAGSGAYKMRVYQPHQAIVLEANASS--PtGAPKIKSIIIKNVPDPASRRLLIQQGDADVARDLGADQ 262
                 99999999999****999**************************************4..66************************************** PP

                 HCHHHHHTTEEEEEEEEEEEEEEEEETTT...STGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHHH CS
   SBP_bac_5 186 ieqlkeakglkvlyespgggvtylafNtk...kppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLke 281
                 i++l++++g+kv  + p+++ +yl+fNt+   +p ++++++ +A    +D+e i k++l+g++  ++s+lp ++pga e+++    ++dp+kAk++L++
  CTQ26966.1 263 IAALQDKPGVKV-LSIPSAEQNYLVFNTAnsaNPLLNNPAFWEAARWLVDYEGITKNLLKGQYFIHQSFLPAGLPGALETNPF---TFDPQKAKAILDK 357
                 ************.****************************************************************888777...79*********** PP

                 TT-BCSSTSCEETCEEEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTT CS
   SBP_bac_5 282 aGykdgdggglrekklkltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsss 373
                 aG+kd             ++l + ++p+   ia+ +q+++++ G+kv++ +    ++ ++rv+++++++++  w +dy+d+++  ++f  + 
  CTQ26966.1 358 AGIKDA-----------HFTLDVENKPPFITIAQSLQASFAQGGVKVDLLPAAG-SQVYARVRAKQHQAAIRLWIPDYFDAHSNASAFAWND 437
                 *****9...........6899999****************************99.9999***********************9999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3891.16
//
Query:       CTQ26967.1  [L=231]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-16   60.2   0.5    4.4e-16   59.8   0.1    1.4  2  Acetyltransf_3  Acetyltransferase (GNAT) domain
    6.1e-05   23.2   0.0    8.6e-05   22.8   0.0    1.2  1  Acetyltransf_1  Acetyltransferase (GNAT) family
     0.0053   16.9   0.0     0.0075   16.4   0.0    1.2  1  Acetyltransf_4  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.1   7.4e-20   4.4e-16       4     137 ..      36     172 ..      34     173 .. 0.83
   2 ?   -4.1   0.0         3   1.8e+04      30      42 ..     201     213 ..     197     224 .. 0.61

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 7.4e-20
  Acetyltransf_3   4 Lrpltee.Dlealfe..lrsdpevmry..lpepltleeaeewlerawaeeseeegygwaivl.kdtgviGsvglrdleeedeeaelgymlaps.f 91 
                     L pl  + ++++lf+   + d   +++   + p++++++ +w++   ++   +  + +a+v+ ++++++G+v++  +e+e +++e+g + ++   
      CTQ26967.1  36 LEPLDVDrHAADLFAayALGDNSDWTWlaSTRPESVAATAHWIAGKVND---DALVPYAVVDlRSEQAVGIVSYMAIEREMGTVEIGHVTWSRrM 127
                     77885555999998523455666555775566************75543...3446699998777757*******************99985549 PP

  Acetyltransf_3  92 wgkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                      +  ++teav  ll+  f++  ++rl++++d  N aS+r +e+lGf
      CTQ26967.1 128 KNTPLGTEAVWLLLKNGFDHG-YRRLEWKCDSMNVASRRAAERLGF 172
                     999***************888.***********************9 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3
  Acetyltransf_3  30 epltleeaeewle 42 
                     +p+ +++ ++wl+
      CTQ26967.1 201 WPARDAALRAWLA 213
                     4555555666665 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.4e-08   8.6e-05      34     117 .]      90     172 ..      55     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.4e-08
                     EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  34 gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     + +v ++ ++ +G +s+  i   + g+++i  +  s+   +  lG++ ++ l++  +++g++++++ +++ n+a++r  e+lGF
      CTQ26967.1  90 YAVVDLRSEQAVGIVSYMAIER-EMGTVEIGHVTWSRRMKNTPLGTEAVWLLLKNGFDHGYRRLEWKCDSMNVASRRAAERLGF 172
                     4445667799**********99.789******************************************999************9 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.2e-06    0.0075      32     152 ..      69     190 ..      45     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.2e-06
  Acetyltransf_4  32 ssveefekfleal.dsekeyvflvae..sdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspne 123
                     +sv  ++ +++   + +   ++ v +  s++ vG+  + +++   + + +e+      r ++++ lg e + +l +     ++++l+ +  s n 
      CTQ26967.1  69 ESVAATAHWIAGKvNDDALVPYAVVDlrSEQAVGIVSYMAIER--EMGTVEIGHVTWSRRMKNTPLGTEAVWLLLKNGFDHGYRRLEWKCDSMNV 161
                     688899999*99988999*************************..999999876555567*******99888888777889************** PP

  Acetyltransf_4 124 nsiqfhkalGFelvgifkkcikkngrwiD 152
                     +s   +++lGF+++g++++    +gr  D
      CTQ26967.1 162 ASRRAAERLGFSWEGRLRQRLVRKGRTRD 190
                     ******************99999999777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1771.46
//
Query:       CTQ26968.1  [L=554]
Description: choline dehydrogenase, a flavoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.1e-104  347.3   0.0   1.2e-103  346.5   0.0    1.4  2  GMC_oxred_N    GMC oxidoreductase
    5.8e-42  143.6   0.0    9.5e-42  142.9   0.0    1.4  1  GMC_oxred_C    GMC oxidoreductase
     0.0018   17.9   0.0       0.23   11.0   0.0    2.9  3  DAO            FAD dependent oxidoreductase
     0.0092   15.1   0.0      0.013   14.5   0.0    1.2  1  Lycopene_cycl  Lycopene cyclase protein
  ------ inclusion threshold ------
      0.022   15.0   0.0      0.059   13.6   0.0    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      0.023   13.8   0.0       0.31   10.1   0.0    2.1  2  FAD_binding_2  FAD binding domain
      0.082   12.1   0.0       0.18   11.0   0.0    1.5  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.084   12.1   0.0       0.14   11.4   0.0    1.3  1  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.5   0.0  5.5e-107  1.2e-103       1     295 [.       3     300 ..       3     301 .. 0.99
   2 ?   -3.9   0.0         3   6.8e+03     169     183 ..     465     481 ..     458     484 .. 0.73

  Alignments for each domain:
  == domain 1  score: 346.5 bits;  conditional E-value: 5.5e-107
  GMC_oxred_N   1 vdelveggGsagsvvAaRLsedpstsvlvleaggreknrl...imvlalalklidkklntayetepekalngrrlilpaGktlGGgsvvNwsayiRtp 95 
                  +d++++g+Gsag+v+A+RL+edp+t+vl+leagg +++++   +m++ala++l+ k++n+ayetepe+ +n+rr+ + +Gk+lGG+s++N+++yiR++
   CTQ26968.1   3 FDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDfrtQMPAALAYPLQGKRYNWAYETEPEPYMNNRRMECGRGKGLGGSSLINGMCYIRGN 100
                  69************************************9999******************************************************** PP

  GMC_oxred_N  96 aadldeWeeeaglegwssdevlpafkkvetaqalesdlhgvdgrlgvtekgkeesplnkallkaaeelGlpvprdlngkhqcGvcllgv.tcrtgarq 192
                  a dld+W++e gle ws+ ++lp+++k+et++ + +d+hg dg+++vt+  + ++pl++a+++a+ ++G+p ++dlng +q+G++ +++ ++++g+r 
   CTQ26968.1 101 AMDLDNWAKEPGLEHWSYLDCLPYYRKAETRDIGPNDYHGGDGPVSVTTPKPGNNPLFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRtVTPQGRRA 198
                  *****************************999999******************************************************99******* PP

  GMC_oxred_N 193 starawLrpalerpnleiltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrSGlGkaehLkevgvdvvvdlp.vGk 289
                  star +L++a  rpnl+i t+a +++ii+   +kravGVe+ + ++t+  + +a+kev+++aGa++sPq+LqrSG+G+ e L+++++ vv+dlp vG+
   CTQ26968.1 199 STARGYLDQARGRPNLTIRTHALTDHIIFA--GKRAVGVEWLEGESTIPSKATANKEVLLCAGAIASPQILQRSGVGNPELLRQFDIPVVHDLPgVGE 294
                  ******************************..****************************************************************** PP

  GMC_oxred_N 290 nLqdHp 295
                  nLqdH+
   CTQ26968.1 295 NLQDHL 300
                  *****8 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3
  GMC_oxred_N 169 rdlngk..hqcGvcllg 183
                  r+  +   h+cG c +g
   CTQ26968.1 465 RNHAETafHPCGTCKMG 481
                  455554569*****998 PP

>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.9   0.0   4.3e-45   9.5e-42       3     144 .]     393     527 ..     391     527 .. 0.92

  Alignments for each domain:
  == domain 1  score: 142.9 bits;  conditional E-value: 4.3e-45
                  --EEEEESTT-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-STC CS
  GMC_oxred_C   3 srGrvtlsssdptgaplidpnylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGadp 100
                  srG+v+l+s+dp+++p+i +ny+s+++d++  ++a++ +r+i++++al       ++g  e ++  + +sd++l++fv+++++t +Hp+Gtc+MG d+
   CTQ26968.1 393 SRGHVRLKSRDPHAHPAILFNYMSHEQDWQEFRDAIRITREIMNQPAL-----DKYRG-REISPGIECQSDAELDEFVRNHAETAFHPCGTCKMGYDE 484
                  9*********************************************53.....22333.3566667999999***********************888 PP

                  GCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHHHH CS
  GMC_oxred_C 101 kdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAeka 144
                  + +VVD ++rvhg+++LrVvDaS++P+++++n ++t+++++ek+
   CTQ26968.1 485 M-AVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIGEKM 527
                  8.****************************************95 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0001      0.23       1      29 [.       4      35 ..       4      40 .. 0.92
   2 ?    2.9   0.0     0.029        65     148     208 ..     200     268 ..     161     366 .. 0.78
   3 ?   -0.4   0.0      0.29   6.5e+02      65     118 ..     457     505 ..     444     520 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
                EEEEECTSHHHHHHHHHHHHTT...EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtllekg 29
                d +iiG+G +G   A  L++ +   V+lle+g
  CTQ26968.1  4 DYIIIGAGSAGNVLATRLTEDPnttVLLLEAG 35
                789*****************9889******98 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHTT.-EEEESECEEEE.EEEETCEEEEE....EECTEEE.EEEEE...EEE--GGGHH.HH.H CS
         DAO 148 ltaalaraaealG.veilegtevtgl.eeedgkvwgve....rttpgen.daada...vVnaaGawsd.ll.g 208
                  +++++++a+ +   +i+++   t++    +++++gve    +    ++ ++a+a   v ++aGa ++ ++ +
  CTQ26968.1 200 TARGYLDQARGRPnLTIRTH-ALTDHiIFAGKRAVGVEwlegE---STIpSKATAnkeVLLCAGAIASpQIlQ 268
                 56778888887753788898.7777514466889999886431...222223333458******998775433 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHHHHHHHHHHHTTTTE.EEEEH CS
         DAO  65 leelreleeelgididyrrtGllslaadeeelealdkllallleaglda.ellda 118
                  +el+e+ ++++ ++ ++++G+  +++de  ++ +d + +    +gl+  +++da
  CTQ26968.1 457 DAELDEFVRNHA-ETAFHPCGTCKMGYDE--MAVVDGEGR---VHGLEGlRVVDA 505
                 578999999866.699**********984..776654332...255544455655 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.9e-06     0.013       1      33 [.       4      35 ..       4      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.9e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieas 33
                   D ++iGaG Ag  lA rl  + p+  v+l+ea+
     CTQ26968.1  4 DYIIIGAGSAGNVLATRL-TEDPNTTVLLLEAG 35
                   789***************.788999*****987 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.6e-05     0.059       1      28 [.       7      35 ..       7      37 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.6e-05
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekr 28
                   I+GaG +G v+A +L+++ +  vllle++
     CTQ26968.1  7 IIGAGSAGNVLATRLTEDpNTTVLLLEAG 35
                   9****************9899******86 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00014      0.31       1      32 [.       4      36 ..       4      39 .. 0.89
   2 ?    1.4   0.0     0.061   1.4e+02     146     204 ..     203     263 ..     159     278 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00014
                   SEEEE--SHHHHHHHHHHHHTTT.-EEEEESSS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGl.kvavvekeq 32
                   D i+iG+G AG + A++++e    +v+++e ++
     CTQ26968.1  4 DYIIIGAGSAGNVLATRLTEDPNtTVLLLEAGG 36
                   88******************9987888888775 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.061
                    HHHHHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEES.EEEE-----GG CS
  FAD_binding_2 146 rlvesarkag.vdfqerteadeLivedgrvtGavvenpesgrevrirak.avvlatgGfgr 204
                      +++ar ++ +++++++  d++i  ++r++G++  + es    + +a+  v+l +g++  
     CTQ26968.1 203 GYLDQARGRPnLTIRTHALTDHIIFAGKRAVGVEWLEGESTIPSKATANkEVLLCAGAIAS 263
                    44567777778999999999*****999****99996666666677777799999999886 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.2e-05      0.18       1      32 [.       3      35 ..       3      51 .. 0.84
   2 ?   -3.2   0.0       1.8     4e+03     230     250 ..     253     272 ..     220     277 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.2e-05
                 CSEEEE--SHHHHHHHHHHHHH.TS-EEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqa.gakvtlvele 32
                 +d+++iG+G AG  +a++l +  +  v+l+e++
   CTQ26968.1  3 FDYIIIGAGSAGNVLATRLTEDpNTTVLLLEAG 35
                 589******************537777777644 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.8
                  EEEE-S-EEES-HHCSHCCT- CS
                  xxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 230 lvvvavGvrpstelleeklgl 250
                   v++++G  +s+++l +++g+
   CTQ26968.1 253 EVLLCAGAIASPQIL-QRSGV 272
                  467777777777777.55554 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.2e-05      0.14      17      49 ..       2      34 ..       1      36 [. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.2e-05
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailer 49
                + D +i+GaGs+G   a  l+++p+  v++le+
  CTQ26968.1  2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEA 34
                5799***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3990.41
//
Query:       CTQ26969.1  [L=490]
Description: NAD+-dependent betaine aldehyde dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-177  589.7   0.0   3.7e-177  589.5   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  589.5   0.0    2e-181  3.7e-177       3     462 .]      17     479 ..      15     479 .. 0.98

  Alignments for each domain:
  == domain 1  score: 589.5 bits;  conditional E-value: 2e-181
                 T-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHH CS
      Aldedh   3 eses.etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlry 99 
                 +++s +t+e+inPatgev+a+v+aa++edvd+av++A++ +k wa+++a+eR++iLr+a dll++r++ela+letl+tGkpl+e++a ++   +dvl+y
  CTQ26969.1  17 SATSgRTFETINPATGEVLATVQAAGREDVDRAVESAQRGQKIWAAMTAMERSRILRRAVDLLRQRNDELARLETLDTGKPLSETAAvDIVTGADVLEY 115
                 5566477******************************************************************************************** PP

                 HHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHH CS
      Aldedh 100 yaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevge 198
                 ya+l+  leg+ +p +++++ ++rrePlGvv+ I +WN+P+ +a+wk apalaaGN++++KP+e tpl+al+lae++ eaglP+gv+nv++g g+e+g+
  CTQ26969.1 116 YAGLIPALEGSQIPLRDSSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGIGAETGQ 214
                 ***************88********************************************************************************** PP

                 HHHH-TTESEEEEES-HHHHHHHHHH.HHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT- CS
      Aldedh 199 alvehpevdkvsftGstevgrkiaka.aaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakkl 296
                 +l+ehp+++k+sftG+++ g+k++++ aa++lk+vt+ElGGk+pli+ +daDld a++ ++++ f+++GQvC++++r++v+ +   ef +k++e+++++
  CTQ26969.1 215 YLTEHPDIAKISFTGGVASGKKVMANsAASSLKEVTMELGGKSPLIIADDADLDLAADIAMMANFYSSGQVCTNGTRVFVPAKRKAEFEHKILERVARI 313
                 **************************888********************************************************************** PP

                 -BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT.E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSS CS
      Aldedh 297 kvgdpldedtdvGPliseaqlekvekyveeakeegaklllGge.reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdte 394
                 + gd +++dt++GPl+s  ++++v +y+e++k ega+ll+Gge  + +g ++g++v+Ptv+++++++m+i++eEiFGPV+s++++ de+e+i+ aN+te
  CTQ26969.1 314 RAGDLFADDTNFGPLVSFPHRDNVLRYIESGKREGARLLCGGEaLKGEGFDNGAWVAPTVFTDCSDEMTIVREEIFGPVMSILSYADEAEVIRRANATE 412
                 *******************************************9999**************************************************** PP

                 EESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 395 yGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 yGLaagv+t +l+ra+r++++leaG ++iN++ ++ ae+ p+gG+k+Sg+Gre+g   l+ yt+vk++
  CTQ26969.1 413 YGLAAGVVTPNLNRAHRIIHQLEAGICWINSWGESPAEM-PVGGYKHSGIGRENGVMTLQSYTQVKSI 479
                 ********************************8888888.**************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3663.20
//
Query:       CTQ26970.1  [L=195]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-29  100.1   3.8    9.2e-29  100.0   0.8    2.3  2  TetR_C_6   BetI-type transcriptional repressor, C-terminal
    3.8e-14   52.2   0.3    8.5e-14   51.1   0.0    1.8  2  TetR_N     Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.034   13.9   0.0    1.5  1  LacI       Bacterial regulatory proteins, lacI family
      0.061   13.7   0.0       0.12   12.7   0.0    1.5  1  DUF3390    Domain of unknown function (DUF3390)
       0.11   12.3   0.0       0.42   10.5   0.0    2.0  2  HTH_5      Bacterial regulatory protein, arsR family
       0.76    9.7   4.1        7.8    6.5   0.2    3.1  3  HlyD_D4    Long alpha hairpin domain of cation efflux system 
       0.86   10.1   8.7       0.23   12.0   1.2    2.9  3  TetR_C_28  Tetracyclin repressor-like, C-terminal domain
        2.6    8.3   5.9       0.73   10.1   0.5    2.4  3  TetR_C_31  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.22     5e+02      62      62 ..      57      57 ..       6      86 .. 0.49
   2 !  100.0   0.8   4.1e-32   9.2e-29       3     114 ..      86     192 ..      84     193 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.22
                H CS
    TetR_C_6 62 a 62
                +
  CTQ26970.1 57 L 57
                1 PP

  == domain 2  score: 100.0 bits;  conditional E-value: 4.1e-32
                 HHHHHHHHCCSTHSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSTHHHHHHHHHHHHHHHHHHHHHTCTTCHHHH CS
    TetR_C_6   3 erlraileallpldqerraelavwlafwaeaardpelaelqrenyarlrsnlrallaelaegglradadaeaaAerlaAlidGLwlraalapeeldaer 101
                 +rl+ai+  +++ +q ++a++++wlafwa+++++p l +lq+++ +rl snl+ ++++ ++     +++a++a  +laAlidGLwlraal+ ++ld+  
  CTQ26970.1  86 QRLQAIVGGNFDETQISSAAMKAWLAFWASSMHQPMLYRLQQVSSRRLLSNLVYEFRRELP-----REQAQEAGYGLAALIDGLWLRAALSGKPLDKTL 179
                 8************************************************************.....********************************* PP

                 HHHHHHHHHHHHT CS
    TetR_C_6 102 aralvrrhldall 114
                 a+ l +++++++l
  CTQ26970.1 180 AQSLTSHFIRQHL 192
                 *********9987 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   3.8e-17   8.5e-14       1      46 [.      14      59 ..      14      66 .. 0.98
   2 ?   -3.7   0.1       4.9   1.1e+04      23      29 ..     150     156 ..     148     160 .. 0.57

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 3.8e-17
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLlea 46
                ++da++  ++e G++ +t+++IA+rAGvs g + +yF++K +Llea
  CTQ26970.1 14 LIDATLDAINEVGMHDATIAQIARRAGVSTGIISHYFKDKNGLLEA 59
                79******************************************98 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.9
                 HHHHTSS CS
      TetR_N  23 AkrAGvs 29 
                 A++AG++
  CTQ26970.1 150 AQEAGYG 156
                 4556654 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.5e-05     0.034       1      31 [.      31      61 ..      31      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHH CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetr 31
                ti  +Ar+AGVS+  +S++ ++k+   e+t 
  CTQ26970.1 31 TIAQIARRAGVSTGIISHYFKDKNGLLEATM 61
                8999**************9999977777665 PP

>> DUF3390  Domain of unknown function (DUF3390)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.5e-05      0.12      10      60 ..      85     147 ..      76     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.5e-05
     DUF3390  10 eqgkkvikgkgakasaaEklamkgf....alaasspalYrlgtklatrl........rgllPk 60 
                 +q  ++i+g +  ++ + ++amk++    a+ +++p lYrl +   +rl        r+ lP+
  CTQ26970.1  85 SQRLQAIVGGNFDETQISSAAMKAWlafwASSMHQPMLYRLQQVSSRRLlsnlvyefRRELPR 147
                 67788999999999999999999863222667789******9999888877777777666665 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00019      0.42      16      37 ..      30      51 ..      19      57 .. 0.90
   2 ?   -3.0   0.1       3.1   6.9e+03      27      37 ..     179     189 ..     179     190 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00019
                EEHHHHHHHHTS-HHHHHHHHH CS
       HTH_5 16 lcvcelaeelglsqstvShHLk 37
                +++ ++a+  g+s +++Sh++k
  CTQ26970.1 30 ATIAQIARRAGVSTGIISHYFK 51
                7999***************998 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.1
                 S-HHHHHHHHH CS
       HTH_5  27 lsqstvShHLk 37 
                 l qs +Sh  +
  CTQ26970.1 179 LAQSLTSHFIR 189
                 57999999765 PP

>> HlyD_D4  Long alpha hairpin domain of cation efflux system protein, CusB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2    0.0035       7.8      26      52 ..      12      38 ..       4      41 .. 0.85
   2 ?    0.7   0.1      0.22   4.9e+02      24      37 ..      63      77 ..      56      88 .. 0.74
   3 ?    2.1   0.0      0.08   1.8e+02      24      42 ..     156     174 ..     150     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0035
                HHHHHHHHHHHHHCT--HHHHHHHHHH CS
     HlyD_D4 26 aslldaareRlrLaGMpdadIrrleas 52
                + l+da +  +   GM da+I +++++
  CTQ26970.1 12 RQLIDATLDAINEVGMHDATIAQIARR 38
                67889999999999**********997 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.22
                --HH.HHHHHHHHHH CS
     HlyD_D4 24 dlas.lldaareRlr 37
                d  s l da+++Rl 
  CTQ26970.1 63 DITSqLRDAVLNRLH 77
                544415699**9985 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.08
                 --HHHHHHHHHHHHHCT-- CS
     HlyD_D4  24 dlaslldaareRlrLaGMp 42 
                 +la+l+d+   R  L+G p
  CTQ26970.1 156 GLAALIDGLWLRAALSGKP 174
                 579**************87 PP

>> TetR_C_28  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       2.5   5.5e+03      53      64 ..      28      39 ..      10      41 .. 0.56
   2 ?    2.0   0.1      0.13   2.8e+02      76      94 ..      61      79 ..      55      81 .. 0.86
   3 ?   12.0   1.2    0.0001      0.23      18      89 ..     107     185 ..      85     190 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.5
                HHHHHHHHHHHH CS
   TetR_C_28 53 ldpvlatlvrlA 64
                 d+  a+++r A
  CTQ26970.1 28 HDATIAQIARRA 39
                456777777766 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.13
                SS---HHHHHHHHHHHHHT CS
   TetR_C_28 76 lppldpeeraallerLlel 94
                +++++ ++r+a+l+rL +l
  CTQ26970.1 61 MRDITSQLRDAVLNRLHAL 79
                5788999*********987 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.0001
                 HHHHHHHHHGGGSHHH........HHHHHHHHHHHS--TTGG-HHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHH CS
   TetR_C_28  18 allaallaalaedpel........lepwrewyrrwlerleadgldpvlatlvrlAadGlwlaellglppldpeeraalle 89 
                 +++ a+ a+ +++p l        ++++++ + + +++l  ++ +++   l  + +dGlwl ++l + pld+ + + l  
  CTQ26970.1 107 KAWLAFWASSMHQPMLyrlqqvssRRLLSNLVYEFRRELPREQAQEAGYGL-AALIDGLWLRAALSGKPLDKTLAQSLTS 185
                 555555555555555544444444444444444444444444333333333.3448****************99988765 PP

>> TetR_C_31  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.3   2.9e+03       4      30 ..      12      37 ..      10      43 .. 0.60
   2 ?    0.7   0.1      0.27     6e+02      41      77 ..      58      91 ..      53     111 .. 0.60
   3 ?   10.1   0.5   0.00032      0.73      27      95 ..     109     178 ..      87     190 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.3
                CHHHHHHHHHCCCCCTTHHHHHHHHHH CS
   TetR_C_31  4 eeladlladlldraladrertlAryel 30
                ++l+d+  d++ +  +  ++t+A++++
  CTQ26970.1 12 RQLIDATLDAINE-VGMHDATIAQIAR 37
                5666666666655.4566666666655 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.27
                HHHHHHHHHHHHHHHHHHHHHHCS.S-HHHHHHHHHHH CS
   TetR_C_31 41 raalarlrralrealaallaalGl.pdpeeaarllvaa 77
                 a +++   +lr+   a+l +l + pd   a ++l a 
  CTQ26970.1 58 EATMRDITSQLRD---AVLNRLHAlPDGS-ASQRLQAI 91
                4455555555555...4444444445433.44444444 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00032
                 HHHHHHHHCCSCHHHHHHHHHHHHHHHHHH.HHHHHHCSS-HHHHHHHHHHHHHHHHHHHHHSGTS-H..HH CS
   TetR_C_31  27 ryelfleaarrPeLraalarlrralreala.allaalGlpdpeeaarllvaaldGllldrLagpaadp..ra 95 
                  ++ +  + ++P L ++++ + r+l+  l+ ++ ++l +++++ea+  l a++dGl l++   +   p  ++
  CTQ26970.1 109 WLAFWASSMHQPMLYRLQQVSSRRLLSNLVyEFRRELPREQAQEAGYGLAALIDGLWLRAALSG--KPldKT 178
                 566677788999999999998888888655155556666778889999***********99888..443233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1540.16
//
Query:       CTQ26971.1  [L=677]
Description: high-affinity choline transporter (BCCT family) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.1e-175  582.3  41.2   7.2e-175  582.1  41.2    1.0  1  BCCT      BCCT, betaine/carnitine/choline family transporter
  ------ inclusion threshold ------
       0.28   11.1   2.6        1.4    8.9   0.1    2.7  2  DUF5510   Family of unknown function (DUF5510)
        4.2    7.7   7.3        0.2   12.0   0.5    2.3  2  EbsA      EbsA-like protein


Domain annotation for each model (and alignments):
>> BCCT  BCCT, betaine/carnitine/choline family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  582.1  41.2  1.2e-178  7.2e-175       1     483 [.      17     501 ..      17     503 .. 0.99

  Alignments for each domain:
  == domain 1  score: 582.1 bits;  conditional E-value: 1.2e-178
        BCCT   1 vflvslliivlfvllalvfpealeevlsslnswilekfgwlylllvllflvfllvlafskygkikLGkddekpefstlsWfamlfaaglgigllfwgva 99 
                 vf++s+++i+lf l++++f + ++e+++++ +w++++fgw+yll+++l++vf++++a+s++g++kLG +++kpefs lsW+amlfaag+gi+l+f++va
  CTQ26971.1  17 VFYTSAGLILLFSLMTIFFRDFSAEWIGRTLDWVSKTFGWYYLLAATLYIVFVVCIACSRFGSVKLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVA 115
                 89************************************************************************************************* PP

        BCCT 100 EplahylspppgaeagteeaaqeAlaytffhwGlhaWaiyalvalalayfayrkglpltissalypllgeringllgkvvDvlavlatvfGvatslGlg 198
                 Ep++ y++ pp+++++t eaa++A+ +t+fh+Gl++W++yal+++al+yf+yr +lplti+salyp++g+ring++g+ vD++av++t+fG+at+lG+g
  CTQ26971.1 116 EPVTQYMQ-PPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIG 213
                 ********.77778************************************************************************************* PP

        BCCT 199 vlqinaglselfgieesltvqlaiivvitalatvsavsGldkGikrlSnlnlvlalllllfvllvGptlfilntfvqslgdylqnlvalslatdaaeea 297
                 v+q+n+gls lf+i++sl  ++a+i++ +++at+s++sG+dkGi++lS+ln++lal l+lfvl++G+t+f+ln++v ++gdy+++++ ++l+  a+++ 
  CTQ26971.1 214 VVQLNYGLSVLFDIPDSLAAKAALIALSVIIATISVTSGVDKGIRVLSELNVALALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRP 312
                 **************************************************************************************************9 PP

        BCCT 298 eewlasWTvFyWawwiawapfvGlFiAriSrGRtiRefilgvllvptlvtflwftvlGgtaielelegeaelaeaaeasveaalfalleqlplgsilsv 396
                  ew+++WT+F+Waww+aw+pfvGlF+AriSrGRtiR+f++g+l++p  +t+lw++v+G++a++   +g+a++a++a a++e  +++ll+q+p  ++ + 
  CTQ26971.1 313 VEWMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVMGTLIIPFTFTLLWLSVFGNSALYEIIHGDAAFAQEAMAHPERGFYSLLAQYPAFTFSAS 411
                 9************************************************************************************************** PP

        BCCT 397 lavvliiiffvTsaDSatlvlatltsgg...denpprkqrvfWgvllgavaavlllagglealqsasiiaalPftlvlllmvvsllkalr 483
                 +a+++ ++f+vTsaDS++lvl+++ts+    ++++p+++r+fW+v++g++++ +l+++g++alq++++i++lPf++v++++++ l+k+l+
  CTQ26971.1 412 VATITGLLFYVTSADSGALVLGNFTSKLkdiNSDAPNWLRIFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPFSFVIFFVMAGLYKSLK 501
                 **************************9977788******************************************************997 PP

>> DUF5510  Family of unknown function (DUF5510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00023       1.4      38      58 ..     156     176 ..     152     178 .. 0.89
   2 ?    0.9   0.4     0.074   4.4e+02      34      43 ..     199     208 ..     195     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00023
     DUF5510  38 ilGlacayftykyiipifias 58 
                 ++G+a  yf+y+y +p+ i s
  CTQ26971.1 156 LMGMALGYFSYRYNLPLTIRS 176
                 79**************99976 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.074
     DUF5510  34 viGtilGlac 43 
                 viGti+G+a 
  CTQ26971.1 199 VIGTIFGIAT 208
                 9******996 PP

>> EbsA  EbsA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   1.3       1.4   8.2e+03      23      59 ..     242     279 ..     236     292 .. 0.68
   2 ?   12.0   0.5   3.4e-05       0.2      14      66 ..     449     504 ..     446     512 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
        EbsA  23 fiilfislilllEn.triylksnlvlllflvlvilgfk 59 
                 +ii +is++    + +r+ ++ n+ l+l l+l++l + 
  CTQ26971.1 242 VIIATISVTSGVDKgIRVLSELNVALALGLILFVLFMG 279
                 55555555554443257778888999999999888654 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.4e-05
        EbsA  14 taiiyWSitfiilfislilllEntriylksnlvlllf..lvlvil.gfkryliiee 66 
                 ++ i+WS+++ +l++++ ++  +  ++ +++++ l f  ++++++ g+ ++l++e+
  CTQ26971.1 449 WLRIFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPFsfVIFFVMaGLYKSLKVED 504
                 5569*************999888888888777765542244433348888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4759.00
//
Query:       CTQ26972.1  [L=148]
Description: inhibitor of vertebrate C-lysozyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-29  102.8   0.1    1.5e-29  102.5   0.1    1.1  1  Ivy       Inhibitor of vertebrate lysozyme (Ivy)
  ------ inclusion threshold ------
       0.11   11.5   0.3       0.14   11.2   0.3    1.1  1  YhfT      Protein of unknown function


Domain annotation for each model (and alignments):
>> Ivy  Inhibitor of vertebrate lysozyme (Ivy)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.1   1.7e-33   1.5e-29       2     117 .]      30     143 ..      29     143 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 1.7e-33
                 CSCCCHHHHHHHCTTS-S--CHHHCT-SEEEEEEEEEETTEEEEEEEEE-TT-TTTEEEEEEEETTTTEEEEEEEEEETTTCCCT-GGGTEEEEEESS- CS
         Ivy   2 kqpeyraawaklvkgekrlPeWvrsgsgtsspsqavtlagkkYlvgslCkphdCaserlavlfskdkkkaygllvtvpekleadkapskhaklrwlGkp 100
                 +++++ra+++++vkg++ lP+Wv+ g gt sp+q+v+l++++++v+s+CkphdC++er+av++s+++k++ g+++ v+ek+ +       +kl+wl+  
  CTQ26972.1  30 QDAATRASFNQMVKGHQ-LPAWVTTG-GTGSPAQTVKLGSESWQVLSACKPHDCGHERIAVIWSEKSKQMSGVYSVVDEKTDQ-------EKLTWLNV- 118
                 78899************.********.****************************************************9999.......9*******. PP

                 SCHHC........HHHHCHHHCSTT CS
         Ivy 101 ddelk........aaLteqLkkdPn 117
                 +d+l+        aaL+++L ++P+
  CTQ26972.1 119 SDALSidgktvlfAALSGSLDNHPD 143
                 5566668999**************6 PP

>> YhfT  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   1.6e-05      0.14     238     278 ..       4      44 ..       1      57 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.6e-05
        YhfT 238 llGalvaaaaslsllagdevslallaegevseaalaalara 278
                  l a+va+aas s++a+++v+l++la+ +++ a + +++++
  CTQ26972.1   4 ALTAIVALAASASVMAQGDVTLNSLAQDAATRASFNQMVKG 44 
                 5679******************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1191.28
//
Query:       CTQ26973.1  [L=418]
Description: Small conductance mechanosensitive ion channel (MscS) family transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-36  124.5  12.4    1.9e-30  106.0   5.3    2.6  3  MS_channel     Mechanosensitive ion channel
  ------ inclusion threshold ------
       0.04   13.0   0.2      0.057   12.5   0.2    1.1  1  Atg14          Vacuolar sorting 38 and autophagy-related subu
       0.86    9.5  19.7        1.5    8.6  11.4    2.4  2  DUF4271        Domain of unknown function (DUF4271)
        1.7    9.2   8.3       0.25   11.8   1.1    2.6  2  SNARE_assoc    SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.9         1   4.6e+03       8      32 ..      73      97 ..      69     115 .. 0.70
   2 !  106.0   5.3   4.2e-34   1.9e-30       3     141 ..     140     283 ..     138     289 .. 0.96
   3 !   22.8   0.0   1.2e-08   5.5e-05     134     203 ..     318     387 ..     311     390 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1
                HHHHHHHHHHHTTT--SCCHHHHHH CS
  MS_channel  8 iivvgilivlsllgvnvsallavlG 32
                i v++++ vl+++   +++l+++  
  CTQ26973.1 73 IPVIIVYYVLQFMPAMPASLVTAIN 97
                5578888888888888888887654 PP

  == domain 2  score: 106.0 bits;  conditional E-value: 4.2e-34
                 HHHHHHHHHHHHHHHHTTT--.SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESS..SEEEEEEEE-SSEEEEEETTSEEEEEEH CS
  MS_channel   3 ilkiliivvgilivlsllgvn.vsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveig..dieGtVediglrttkirtfdgrivtiPn 98 
                 i kil+ +++ +++l ++  + + +++++lGa++++l+++++ ++++lva ++l+ ++ +++GD++e++  +++G+V+di l t++ir++d++i  iP+
  CTQ26973.1 140 IGKILVHILAAIMILAVMSNKsPIIIISSLGAVAAVLMIVFQHTLLSLVANVQLSSNDVLQLGDWIEMPdkNLSGEVTDIALHTITIRNWDNTISRIPT 238
                 6689999***********999788999******************************************99**************************** PP

                 HHHHTS-EEESSS...SSEEEEEEEEEE-TTS-...HHHHHHHHH CS
  MS_channel  99 sslvtsnieNlsr..esgtrrikvsigvtyssdvkklekvleelk 141
                 ++++t++ +N++   +sg+rri +si ++ +s ++ ++++l+ ++
  CTQ26973.1 239 KNFLTETYTNWQAmfSSGARRIMRSIAIDQHSVRFLDQEMLSSML 283
                 ***********************************9999988765 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 1.2e-08
                 HHHHHHHHHHHHH-TTB-TTS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHHHHHHHT CS
  MS_channel 134 ekvleelkealkekpevlkdkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikkileeeg 203
                    ++ l+  l e p+++k++   ++ ++++ s++++e+++f+ ++++++y+++qs+i++ i ++  ++ 
  CTQ26973.1 318 TLFRHYLMHYLAERPDIIKQMYIVARTLKPSPSGIPLEIYCFTSSTLWKDYENTQSAIFEYITAVAGQFS 387
                 567788899999************************************************9998877665 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   1.3e-05     0.057     169     281 ..     116     265 ..     111     279 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
       Atg14 169 yglrrtsyergkwvfskngeseesytIgg......iplpdlrdlnafpaeeIsasLsyiaqLlaLvshyLsirLPaeltlphscqpi............ 249
                  ++ ++sy r   +++kn + + +++Ig        ++++l  +++ ++  I +sL+ +a  l++v + + + L a+++l++++  +            
  CTQ26973.1 116 LDIVNSSYLRK--TKRKNHSIKGYIQIGKilvhilAAIMILAVMSNKSPIIIISSLGAVAAVLMIVFQHTLLSLVANVQLSSNDVLQlgdwiempdknl 212
                 56666667666..788999**********8877777888888888899999********************************9965888888888888 PP

       Atg14 250 .........................rplfiekslpklspeteseflegvalLaynia 281
                                          +    ++ l +++++ ++ f++g  +++ +ia
  CTQ26973.1 213 sgevtdialhtitirnwdntisripT----KNFLTETYTNWQAMFSSGARRIMRSIA 265
                 88888888888887776555544221....223333446777777777777777776 PP

>> DUF4271  Domain of unknown function (DUF4271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  11.4   0.00034       1.5      83     179 ..      19     120 ..       2     126 .. 0.75
   2 ?    4.7   8.9    0.0057        25       7     118 ..      99     197 ..      90     202 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00034
     DUF4271  83 ssllllliiflilllylllKlllykllgwlFfdkkkirqwifsyl....sylsllgl.llfplvlllvyfplssqillililiillliklllllyksir 176
                   + l+l+++ ++++ ll+K+ll+k++  +Ff++ k +  +++      ++++++ + +++ ++ ++  +p s+ +++  i+ il++i++  ++  ++ 
  CTQ26973.1  19 VGFNLILLLLSGIFAHLLCKFLLIKVVRKVFFSSHKQDVPLEKDRriaeKLSNFIPViIVYYVLQFMPAMPASLVTAINTICGILFFIFMSVFFNEMLD 117
                 678999****************************99998887754111133444444377777778888888888888888888888888888887777 PP

     DUF4271 177 ifk 179
                 i +
  CTQ26973.1 118 IVN 120
                 766 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0057
     DUF4271   7 lcflllalaksrfrkffsrllklffnnkereslfkeetksesrfqlflllltclllglllylllsefgslfgsylassllllliiflilllylllKlll 105
                 +c     +++++f ++f + + +++n  +  +++++ + s   +  +  +l+ +l +++++ ++s+     +s   + +++  + +++ +l+++++  l
  CTQ26973.1  99 ICG----ILFFIFMSVFFNEMLDIVNSSYLRKTKRK-NHSIKGYIQIGKILVHILAAIMILAVMSN-----KS---PIIIISSLGAVAAVLMIVFQHTL 184
                 333....44455555555556666677776667777.888899999999999*****999999999.....33...56666666677777888999999 PP

     DUF4271 106 ykllgwlFfdkkk 118
                 ++l++++  +++ 
  CTQ26973.1 185 LSLVANVQLSSND 197
                 9999998776665 PP

>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.1   5.7e-05      0.25      15     101 ..      14     109 ..       6     115 .. 0.77
   2 ?    0.1   1.0      0.24   1.1e+03       8      34 ..     152     178 ..     141     193 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.7e-05
  SNARE_assoc  15 glllgtlvtslgallGaslayllgrylgrkalrrkllsekrvka.......lerlver..ygflallllrllpivPrdlvnyvaGltrvsfkrFfl 101
                  ++ l++   ++  ll++++a+ll ++l+ k +r+ ++s+++ +        +++++ +    +++  +l++ p +P +lv+++  ++++ f  F+ 
   CTQ26973.1  14 NPALAVGFNLILLLLSGIFAHLLCKFLLIKVVRKVFFSSHKQDVplekdrrIAEKLSNfiPVIIVYYVLQFMPAMPASLVTAINTICGILFFIFMS 109
                  56677788899999*************988888888888888889887777555554423344568899**********99888887777777765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.24
  SNARE_assoc   8 vaaGvlfglllgtlvtslgallGasla 34 
                  ++++v+ +    ++++slga+++ ++ 
   CTQ26973.1 152 MILAVMSNKSPIIIISSLGAVAAVLMI 178
                  455566677789999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1073  (0.0598472); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2996.26
//
Query:       CTQ26974.1  [L=297]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-37  128.5   3.9    3.4e-37  127.8   3.9    1.3  1  LysR_substrate  LysR substrate binding domain
    2.7e-22   78.5   1.7    6.3e-22   77.3   1.7    1.7  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0012   18.6   0.1     0.0023   17.8   0.1    1.4  1  P22_Cro         DNA-binding transcriptional regulator Cro
     0.0061   16.6   0.1      0.016   15.2   0.1    1.8  1  HTH_20          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.018   14.9   0.1      0.076   12.9   0.1    2.1  1  MarR_2          MarR family
      0.025   14.5   0.6      0.061   13.2   0.6    1.6  1  HTH_5           Bacterial regulatory protein, arsR family
      0.043   13.9   0.1       0.25   11.5   0.0    2.2  2  HTH_28          Helix-turn-helix domain
      0.052   13.5   0.0        0.1   12.6   0.0    1.5  1  HTH_11          HTH domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8   3.9   1.5e-40   3.4e-37       7     207 ..      94     287 ..      90     289 .. 0.94

  Alignments for each domain:
  == domain 1  score: 127.8 bits;  conditional E-value: 1.5e-40
                     EEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGGG CS
  LysR_substrate   7 rLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsledL 101
                     +++++++p+++ ++l p+larf+ar+P++ ++l ++   ++++l +eg +Dlair+g+ +++g+e+r+L+ ++ ++va+p++   +  p++++++
      CTQ26974.1  94 EVTLATIPSFGCHWLLPRLARFQARHPQIAVRLLTSL--AVVNLQQEG-IDLAIRMGQGDWEGMESRHLFADEQLVVAAPGY-RGGNLPTTPQAI 184
                     689**********************************..*********.*********************************.5668899***** PP

                     CTSEEEEESTTSTHHHHHHHHHHCTTEEC...EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCC CS
  LysR_substrate 102 adeplilleegsglrdlledalreaglkp...rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrel 193
                     a  + i+        +++++++ +agl+     ++l++n+ + +l++v+ G G+al  rs+v+ ++a+g+lv l     p+p++++l + ++ e 
      CTQ26974.1 185 AASDIIF------SMESWNAWCSQAGLEKpivPAGLRLNDSNLVLEAVRLGAGVALERRSLVAGAIARGELVQLTAVTVPYPWHYWLTVSPQAEN 273
                     *******......8899999999999887788999*************************************7777777888************* PP

                     HHHHHHHHHHHHHH CS
  LysR_substrate 194 spavrafidflrea 207
                     +p v++fi++l e+
      CTQ26974.1 274 RPEVARFIAWLEEE 287
                     ***********997 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   1.7   2.8e-25   6.3e-22       3      60 .]       9      66 ..       7      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 2.8e-25
                HHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  3 qlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                 lr f+ava+ gs+t+AA eL ++++avs++ik+LE+++gv+Lf+R+grg+r Te+G+
  CTQ26974.1  9 SLRSFEAVARLGSVTQAAHELSVTHSAVSQHIKQLEALVGVTLFIRHGRGVRITEEGR 66
                69*******************************************************7 PP

>> P22_Cro  DNA-binding transcriptional regulator Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1     1e-06    0.0023       4      29 ..      14      39 ..      11      45 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1e-06
                HHHHHHSSHHHHHHHHTS-HHHHHHH CS
     P22_Cro  4 dvikhFGgvekvAkalgvtksAVsqW 29
                ++++ +G+v+++A  l vt+sAVsq 
  CTQ26974.1 14 EAVARLGSVTQAAHELSVTHSAVSQH 39
                7899*********************6 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   7.2e-06     0.016      26      52 ..      21      48 ..      10      57 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.2e-06
                -HHHHHHHHTS-HHHHHHHHHHHHH.CT CS
      HTH_20 26 taselaerldlskntlsyHLrvLee.ag 52
                ++++ a++l+++ + +s+H+++Le  +g
  CTQ26974.1 21 SVTQAAHELSVTHSAVSQHIKQLEAlVG 48
                899********************98776 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   3.4e-05     0.076      22      47 ..      19      45 ..       3      46 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.4e-05
                E.EHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 22 l.tvgelarrlglsksavsrilkrLva 47
                l +v++ a +l +++savs+++k L+a
  CTQ26974.1 19 LgSVTQAAHELSVTHSAVSQHIKQLEA 45
                4499*********************98 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.6   2.7e-05     0.061      18      41 ..      22      45 ..      19      46 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.7e-05
                HHHHHHHHTS-HHHHHHHHHHHHH CS
       HTH_5 18 vcelaeelglsqstvShHLkkLre 41
                v++ a el ++ s+vS+H k+L+ 
  CTQ26974.1 22 VTQAAHELSVTHSAVSQHIKQLEA 45
                788899****************85 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.25       8      38 ..      15      45 ..      10      58 .. 0.82
   2 ?   -1.1   0.0      0.94   2.1e+03      14      30 ..      78      94 ..      70      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
      HTH_28  8 llaaGhsvreaArelgisrrtvyrWikryee 38
                ++a+ +sv++aA+el ++++ v++ ik++e+
  CTQ26974.1 15 AVARLGSVTQAAHELSVTHSAVSQHIKQLEA 45
                677889**********************998 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.94
      HTH_28 14 svreaArelgisrrtvy 30
                 +++a r ++i +rt+ 
  CTQ26974.1 78 HIADATRMVQIKPRTLE 94
                57889999999999986 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.5e-05       0.1      22      54 ..      26      59 ..      21      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.5e-05
      HTH_11 22 AeeLnvSrrtvrrdIkaLeelg.vpIesepgrGY 54
                A eL+v+ ++v ++Ik+Le+l  v +  + grG 
  CTQ26974.1 26 AHELSVTHSAVSQHIKQLEALVgVTLFIRHGRGV 59
                779****************997788777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2306.69
//
Query:       CTQ26975.1  [L=201]
Description: putative S-transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-15   57.0   0.0    4.7e-15   55.8   0.0    1.6  2  GST_N_3   Glutathione S-transferase, N-terminal domain
    1.1e-09   38.5   0.0    5.2e-09   36.3   0.0    2.0  2  GST_N_2   Glutathione S-transferase, N-terminal domain
    9.9e-07   29.0   0.0    1.8e-06   28.2   0.0    1.4  1  GST_N     Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   7.9e-19   4.7e-15       1      72 [.       3      75 ..       3      79 .. 0.95
   2 ?   -2.8   0.0       1.5   8.9e+03      22      40 ..     108     127 ..      98     131 .. 0.53

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 7.9e-19
                EES-TTSHHHHHHHHHHHHHT--EEEE---TTTTHHHHHHH-TT--SSEEE.TTS-EEESHHHHHHHHHHHH- CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvevvevtpgehdeellaknplgkvPvLe.ddgealtdSlaIidyLeelyp 72
                L+g+ +Spy+rrv++ L + g+++e  ++++++ ++e++++np  k+P+ + d+g+ l+dS+ I++y+e++ p
  CTQ26975.1  3 LIGMMDSPYVRRVAVSLALYGVEFESLPLSVFSGFDEFSRINPVVKAPTVVlDNGTQLMDSTLILHYFETTNP 75
                899***********************************************9677***************9876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
                 --EEEE---TTT.THHHHHH CS
     GST_N_3  22 lpvevvevtpge.hdeella 40 
                 l +e++  ++++ h +++ +
  CTQ26975.1 108 LVYEHRLRPEEKqHQPWIAR 127
                 44666554433314666555 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   8.7e-13   5.2e-09       2      69 ..       9      72 ..       8      73 .. 0.92
   2 ?   -0.4   0.0      0.24   1.4e+03      26      44 ..     114     132 ..      97     177 .. 0.62

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 8.7e-13
                -HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHHH CS
     GST_N_2  2 CPwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlrylet 69
                +P+++Rv + lal g+e++  ++ + + gf+   ef+r+np ++ P+ ++++g+ +++S+ Il y+et
  CTQ26975.1  9 SPYVRRVAVSLALYGVEFESLPL-SVFSGFD---EFSRINPVVKAPTVVLDNGTQLMDSTLILHYFET 72
                8******************8776.4467776...7*******************************98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.24
                 ...-TTSHHHHHHHHCTTT CS
     GST_N_2  26 lepkgfekseefprlnprg 44 
                 l+p+ ++  ++  r+++++
  CTQ26975.1 114 LRPEEKQHQPWIARVTGQL 132
                 3445555557777777654 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.9e-10   1.8e-06       3      73 ..       1      69 [.       1      72 [. 0.91

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 2.9e-10
                EEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET.TEEEESHHHHHHH CS
       GST_N  3 ltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn.gkkltESraIleY 73
                ++l ++++sp++ r+ + la  gve+e  pl +  g+   +e+ ++np  k+P+++ + g  l+ S+ Il+Y
  CTQ26975.1  1 MKLIGMMDSPYVRRVAVSLALYGVEFESLPLSVFSGF---DEFSRINPVVKAPTVVLDnGTQLMDSTLILHY 69
                578899**************************96666...69***********988666************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1637.01
//
Query:       CTQ26976.1  [L=261]
Description: Short chain dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-67  226.9   1.7    2.9e-67  226.7   1.7    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.2e-52  178.2   0.6    1.6e-52  177.8   0.6    1.1  1  adh_short     short chain dehydrogenase
    7.2e-13   48.8   0.8    9.8e-13   48.4   0.8    1.2  1  KR            KR domain
  ------ inclusion threshold ------
      0.086   12.3   0.1       0.13   11.7   0.1    1.3  1  Epimerase     NAD dependent epimerase/dehydratase family
      0.096   12.6   0.2       0.31   10.9   0.2    1.8  2  3HCDH_N       3-hydroxyacyl-CoA dehydrogenase, NAD binding do


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.7   1.7     8e-71   2.9e-67       1     233 [.      22     258 ..      22     259 .. 0.94

  Alignments for each domain:
  == domain 1  score: 226.7 bits;  conditional E-value: 8e-71
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   Ga sgIG+ iA +la++Ga+vv+ dl++++  +++v  +++ +g++  ++ DV++ ++++a+v+ +++++g+lDi+vn+agia++  +p+le++ e+
    CTQ26976.1  22 GAGSGIGQTIACSLASAGARVVCFDLRDDGglAETVSHIESIGGQACsYNGDVRQIADLRAAVALAKSRYGRLDIAVNAAGIANA--NPALEMESEQ 116
                   889***************************977777777776666657*************************************..********** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTT..HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHH CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnyn..aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfde 187
                   ++r++d+nl+++++ +ka ++lm e+  gsi+n++s+++ +v  + +  +y+ +Ka++++l+++lA+e+  kgiRvN++spg+++T+++++ + + +
    CTQ26976.1 117 WQRVIDINLTGVWNSCKAEAELMLESggGSIINIASMSGIIVNRGLDqaHYNCSKAGVIHLSKSLAMEWVGKGIRVNSISPGYTATPMNTRPE-MVH 212
                   *********************6655448**************8887777***************************************99876.777 PP

                   HHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 188 lleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                     +e+e+++p++r++++ee+a  alfLasd+as++tG +lvvDgG+
    CTQ26976.1 213 QTREFESQTPMQRMAKVEEMAGPALFLASDAASFCTGVDLVVDGGF 258
                   78999****************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.8   0.6   4.6e-56   1.6e-52       2     188 ..      17     206 ..      16     210 .. 0.96

  Alignments for each domain:
  == domain 1  score: 177.8 bits;  conditional E-value: 4.6e-56
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEE.SCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvd.rseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 v++vtGa+sGIG+ ia  la++Ga+vv++d r +  l+e+++++++ g +a  +++Dv++ ++++a+v+ a++++g+ld+ vn AGi++ +p+ e+++e
  CTQ26976.1  17 VAFVTGAGSGIGQTIACSLASAGARVVCFDlRDDGGLAETVSHIESIGGQACSYNGDVRQIADLRAAVALAKSRYGRLDIAVNAAGIANANPALEMESE 115
                 89**************************772566789************************************************************** PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG..TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvag..kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 +w+rvi++Nltgv + ++a ++ ml++ +G+I+n++S+ g   ++   +a Y +sKa+v++l++sla+e+  +girvn++ PG+++T+m++
  CTQ26976.1 116 QWQRVIDINLTGVWNSCKAEAELMLESGGGSIINIASMSGiiVNRGLDQAHYNCSKAGVIHLSKSLAMEWVGKGIRVNSISPGYTATPMNT 206
                 ****************************************87788999*****************************************97 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.8   2.7e-16   9.8e-13       4     152 ..      19     170 ..      17     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 2.7e-16
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++tG+  g+G+++a  la+ gar + +  R+   d   +++++++e+ g +   ++ Dv + ++++a+++ +k++ +++   ++aAg+++ ++  em++
  CTQ26976.1  19 FVTGAGSGIGQTIACSLASAGARVVCFDLRD---DGGLAETVSHIESIGGQACSYNGDVRQIADLRAAVALAKSRYGRLDIAVNAAGIANANPALEMES 114
                 69*********************99999999...55667799********************************************************* PP

                 HHHHHHHTTTTHHHHHHHHHTTTS--S....EEEEEEEHHHHH--TT..-HHHHHH CS
          KR 103 edleqvlapKvkGawnLhelledesld....ffvlfSSiagllgsag..qanYaaa 152
                 e++++v+   ++G+wn  ++ ++  l+     ++ ++S++g++ ++g  qa+Y + 
  CTQ26976.1 115 EQWQRVIDINLTGVWNSCKAEAELMLEsgggSIINIASMSGIIVNRGldQAHYNCS 170
                 ****************998888855552222799*******999987668888765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.6e-05      0.13       2      97 ..      19     130 ..      18     151 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.6e-05
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHH....HH.T-SEEEE--S---HHH....HHHSH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfk....ee.qpdavihlAavggvaa....ssedp 84 
                 +VtGa   iG+ ++  l+++g +v+++d + +++  +   ++         +++d+++ ++l+++++    ++ + d+ +++A++++ +     +se+ 
  CTQ26976.1  19 FVTGAGSGIGQTIACSLASAGARVVCFDLRDDGGLAETVSHIesiggqaCSYNGDVRQIADLRAAVAlaksRYgRLDIAVNAAGIANANPalemESEQW 117
                 7*****************************99888888888899*****55555555555444444311113358899999998554433011133444 PP

                 HHHHHHHTHHHHH CS
   Epimerase  85 adfieknlqgtln 97 
                 +++i++nl g++n
  CTQ26976.1 118 QRVIDINLTGVWN 130
                 5566666666665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   8.6e-05      0.31       4      44 ..      20      62 ..      17     117 .. 0.80
   2 ?   -1.1   0.0      0.41   1.5e+03      30      42 ..     206     218 ..     177     255 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.6e-05
                EE--SC.CHHHHHHHHHHTT-EEEEE-S-HH.HHHHHHHHHHH CS
     3HCDH_N  4 viGaGt.mGagiaavfasagleVvlvdisee.alekalekiek 44
                v GaG  +G+ ia  +asag +Vv +d +++  l++  ++ie+
  CTQ26976.1 20 VTGAGSgIGQTIACSLASAGARVVCFDLRDDgGLAETVSHIES 62
                77998669*******************9654156666666665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.41
                 S-HHHHHHHHHHH CS
     3HCDH_N  30 iseealekaleki 42 
                 +++e +++ +e  
  CTQ26976.1 206 TRPEMVHQTREFE 218
                 3333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2224.42
//
Query:       CTQ26977.1  [L=265]
Description: Short chain dehydrogenase/reductase family oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-65  219.6   0.6    2.9e-64  216.8   0.6    1.8  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    5.8e-57  192.3   0.2    7.5e-57  191.9   0.2    1.1  1  adh_short        short chain dehydrogenase
    2.4e-15   56.9   0.5    3.2e-15   56.5   0.5    1.2  1  KR               KR domain
     0.0081   15.5   0.1       0.04   13.3   0.0    2.0  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
  ------ inclusion threshold ------
      0.045   13.2   0.1      0.071   12.6   0.1    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family
      0.073   13.7   0.1       0.15   12.7   0.1    1.6  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.074   12.2   0.1      0.094   11.8   0.1    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
        0.1   12.4   0.2       0.15   11.9   0.2    1.3  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.8   0.6   1.3e-67   2.9e-64       1     233 [.      14     262 ..      14     263 .. 0.93

  Alignments for each domain:
  == domain 1  score: 216.8 bits;  conditional E-value: 1.3e-67
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga +gIG++iA+++a+ Ga++v++   e+ ++++e+l ++++a++  l++DVtde+qv++l e+++++fg++D+ + nag+ +     +  +++++f
    CTQ26977.1  14 GACRGIGAGIAERFARDGANLVMVSNAERVHETAETLRQRYQADIlsLQVDVTDEAQVQSLYEQAAARFGTIDVSIQNAGVITI--DYYDRMPKADF 108
                   899*****************************************669************************************9..88888****** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT...... CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg...... 184
                   +++l+vn+++++l++++a+++m ++  gs++n+ss ++++++  + +y+a+K +++++t++lA+el+p +i+vNa +pg+i+ ++++  ++      
    CTQ26977.1 109 EKVLAVNTTGVWLCCREAAKYMVKQnhGSLINTSSGQGRQGFIYTPHYAASKMGVIGITQSLAHELAPWNITVNAFCPGIIESEMWDYNDRvwgeil 205
                   ********************7777669*********************************************************9764433333555 PP

                   ........HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 185 ........fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                           + el++e+ + +p++r+g+pe+va +++fLasd+a+y tGqt+ +DgGl
    CTQ26977.1 206 steqkrygKGELMAEWVEGIPMKRAGKPEDVAGLVAFLASDDARYLTGQTINIDGGL 262
                   54444444667*********************************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.9   0.2   3.4e-60   7.5e-57       1     188 [.       8     195 ..       8     199 .. 0.97

  Alignments for each domain:
  == domain 1  score: 191.9 bits;  conditional E-value: 3.4e-60
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 k+v++tGa++GIG  ia+++a++Ga++v+v++ +e+++e+a+ l++  +a++l +qvDvtd+++v+ l+e+a++++g++dv ++NAG+       ++ +
  CTQ26977.1   8 KTVVITGACRGIGAGIAERFARDGANLVMVSN-AERVHETAETLRQRyQADILSLQVDVTDEAQVQSLYEQAAARFGTIDVSIQNAGVITIDYYDRMPK 105
                 79*************************99765.589**********99****************************************999999***** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 +++e+v++vN tgv l++r+++++m+kq+ G+ +n+sS +g+++++ ++ Y+AsK +v+g+t+sla+elap++i+vna +PG+++++m  
  CTQ26977.1 106 ADFEKVLAVNTTGVWLCCREAAKYMVKQNHGSLINTSSGQGRQGFIYTPHYAASKMGVIGITQSLAHELAPWNITVNAFCPGIIESEMWD 195
                 ***************************************************************************************986 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.5   1.4e-18   3.2e-15       2     151 ..       9     158 ..       8     171 .. 0.87

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 1.4e-18
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkllee 99 
                 t++itG++ g+G  +a+  a++ga +lv++s  ++     +++ ++l+++ +a++  +++Dv+d+++v++l e++ a++++i   i+ Agv+  +  ++
  CTQ26977.1   9 TVVITGACRGIGAGIAERFARDGA-NLVMVSNAER----VHETAETLRQRyQADILSLQVDVTDEAQVQSLYEQAAARFGTIDVSIQNAGVITIDYYDR 102
                 689********************8.6889998833....4445566766659*********************************************** PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHH CS
          KR 100 mtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaa 151
                 m ++d+e+vla   +G+w   +  ++    ++   ++ +SS  g  g     +Yaa
  CTQ26977.1 103 MPKADFEKVLAVNTTGVWLCCREAAKymvkQNHGSLINTSSGQGRQGFIYTPHYAA 158
                 ******************87554444355588888888999888888888888877 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.8e-05      0.04      31     105 ..       2      69 ..       1      77 [. 0.82
   2 ?   -0.7   0.0      0.34   7.6e+02      26      43 ..     148     165 ..     120     192 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.8e-05
                   BS-GTTSEEEEES-SH.HHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--STTT CS
  2-Hacid_dh_C  31 gkelsgktvGiiGlGr.IGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltpet 105
                   +++ ++ktv i G+ r IG  +a+r++  g+++++++  ++  e       + ++l + + ++Di+sl + +t+e 
    CTQ26977.1   2 QRDFQNKTVVITGACRgIGAGIAERFARDGANLVMVSNAERVHE-------TAETLRQRY-QADILSLQVDVTDEA 69 
                   57899********9987*******************99977544.......233555554.689999999988875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.34
                   TCCGSBS-GTTSEEEEES CS
  2-Hacid_dh_C  26 ekallgkelsgktvGiiG 43 
                   +  +     + +++G+iG
    CTQ26977.1 148 QGFIYTPHYAASKMGVIG 165
                   333444455566666666 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.2e-05     0.071       1      82 [.      10      90 ..      10     145 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.2e-05
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.EEEE--TT-HHHHHHHHHHHT-SEEEE-.-S.---HHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.elveldltdrsalerlfkeeqpdavihl.Aa.vggvaasse 82
                +++tGa   iG+ +++++++ g +++ +++ ++ ++ta+   l + +++d++  +   ++ +e q++  +   Aa  g++++s++
  CTQ26977.1 10 VVITGACRGIGAGIAERFARDGANLVMVSNAERVHETAET--LrQRYQADILSLQ--VDVTDEAQVQSLYEQaAArFGTIDVSIQ 90
                689*********************9999999666665543..2455555555433..5555555555555552334444444444 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   6.7e-05      0.15      10      61 ..      19      68 ..       9      84 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.7e-05
                   HHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH CS
  F420_oxidored 10 mgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaee 61
                   +g+++a+++++ ga+   +  a +r  e+ae l++++++++ +  + ++ +e
     CTQ26977.1 19 IGAGIAERFARDGANLVMVSNA-ERVHETAETLRQRYQADILS-LQVDVTDE 68
                   89***********555555533.77888888888888876666.44455444 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   4.2e-05     0.094       1      76 [.      10      78 ..      10     134 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.2e-05
                     EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.. CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel 76
                     v++tGa   iG  + +++++   +++++++++E    e +++l+++++++ l++       dv+d+++++++ e+ 
       CTQ26977.1 10 VVITGACRGIGAGIAERFARDG-ANLVMVSNAERVH-ETAETLRQRYQADILSL-----QVDVTDEAQVQSLYEQA 78
                     79***************98766.5788889998755.55566777777755555.....59999999999988865 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   6.8e-05      0.15       4      56 ..      12      64 ..       9      93 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.8e-05
                EE--.SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS- CS
     3HCDH_N  4 viGa.GtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklk 56
                + Ga   +Gagia+ fa+ g + v+v  +e+  ++ +e+++++++  + + +++
  CTQ26977.1 12 ITGAcRGIGAGIAERFARDGANLVMVSNAERV-HETAETLRQRYQADILSLQVD 64
                55653238*****************9876655.445555555555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      688  (0.0383736); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 2234.39
//
Query:       CTQ26978.1  [L=355]
Description: Inner-membrane translocator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-43  149.4  42.7    1.1e-43  149.4  42.7    1.4  2  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   1.6      0.59   1.1e+04     134     147 ..      15      28 ..       5      31 .. 0.54
   2 !  149.4  42.7     6e-48   1.1e-43       5     267 ..      43     320 ..      39     321 .. 0.92

  Alignments for each domain:
  == domain 1  score: -4.7 bits;  conditional E-value: 0.59
  BPD_transp_2 134 ivllalllvlavll 147
                    +++alllv+a++ 
    CTQ26978.1  15 RTFIALLLVIAFFS 28 
                   34566666666554 PP

  == domain 2  score: 149.4 bits;  conditional E-value: 6e-48
  BPD_transp_2   5 lltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl.........lllallvallvgaavglllgllvlrlkvdeliitllll 92 
                   ++  +ai +++A+G++lv+ ++G+i+l++g++++++++va+ ll+++l+l         ++ ++l   ++g++vgl++g+ ++r++v ++i tl+++
    CTQ26978.1  43 MTQHVAITGLLAIGMTLVI-LTGGIDLSVGAVAGICGMVAGALLTNGLPLwngdilffnVPEVILCVAIFGVLVGLVNGAVITRFGVAPFICTLGMM 138
                   5566899************.*****************************9*********999*********************************** PP

  BPD_transp_2  93 svlvgltlllltgitsgvkgqssvkellgfagallsflsaviv..llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisg 187
                   +v++g +ll++ g t  + +  +  + +gfa   + +l +v+   +l++ ++++ ++l ++t++Gr ++a+g+ne+aar++G+++ + k++++++sg
    CTQ26978.1 139 YVARGSALLFNDGSTYPNLNGMEALGNTGFATLGSGTLLGVYLpiWLMIGFLVLGYWLTTKTPLGRYIYAIGGNESAARLAGVPIVKAKIFVYAFSG 235
                   ********7777776666666666666666666666666666699999************************************************* PP

  BPD_transp_2 188 alAglaGallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilv 267
                   ++A+++G+++a +l+++ p +g +++++ai a vlGg+      g++ g +iGa++i+++ + ++ ++g++  +++v+ g++++ +
    CTQ26978.1 236 LCAAFVGLIVASQLQTAHPMTGNMFEMDAIGATVLGGTalaggrGRVTGSIIGAFVIVFLAD-GMVMMGVSDFWQMVIKGVVIVTA 320
                   **************************************************************.88888888999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 3040.02
//
Query:       CTQ26979.1  [L=520]
Description: fused D-ribose transporter subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-54  181.7   0.3    2.8e-28   99.2   0.0    2.2  2  ABC_tran      ABC transporter
    5.1e-12   46.2   0.5     0.0011   18.8   0.1    3.2  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00016   21.2   3.0    0.00067   19.2   1.2    2.6  2  SMC_N         RecF/RecN/SMC N terminal domain
     0.0002   21.2   1.2    0.00055   19.8   0.5    1.9  3  AAA_15        AAA ATPase domain
    0.00071   19.6   0.5        1.2    9.2   0.2    3.1  3  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
    0.00086   19.0   0.1     0.0093   15.7   0.0    2.2  2  AAA_29        P-loop containing region of AAA domain
    0.00094   19.1   0.3     0.0072   16.3   0.0    2.4  2  RsgA_GTPase   RsgA GTPase
     0.0019   18.7   0.3      0.015   15.8   0.0    2.3  2  AAA_23        AAA domain
     0.0025   17.5   0.9      0.022   14.5   0.2    2.6  2  AAA_30        AAA domain
     0.0043   17.1   0.0       0.11   12.5   0.0    2.2  2  Dynamin_N     Dynamin family
     0.0044   15.7   0.2     0.0074   15.0   0.2    1.3  1  AAA_13        AAA domain
  ------ inclusion threshold ------
      0.011   16.0   4.2       0.49   10.7   0.0    3.5  4  AAA_22        AAA domain
      0.015   15.1   0.7       0.67    9.7   0.1    2.8  3  IstB_IS21     IstB-like ATP binding protein
      0.034   13.0   0.0       0.07   12.0   0.0    1.4  1  DLIC          Dynein light intermediate chain (DLIC)
      0.049   14.1   4.6       0.83   10.1   1.5    3.5  3  AAA           ATPase family associated with various cellular 
      0.073   12.0   0.0       0.17   10.8   0.0    1.6  1  AAA_10        AAA-like domain
       0.13   12.0   0.1       0.51   10.0   0.0    2.1  3  AAA_24        AAA domain
       0.13   11.5   0.1        2.1    7.6   0.0    2.4  2  Zeta_toxin    Zeta toxin
       0.17   11.3   1.0        6.1    6.2   0.1    3.4  4  Mg_chelatase  Magnesium chelatase, subunit ChlI


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   2.9e-31   2.8e-28       1     137 []      39     188 ..      39     188 .. 0.90
   2 !   80.8   0.1   1.4e-25   1.3e-22       1     136 [.     291     448 ..     291     449 .. 0.91

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 2.9e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................esd 82 
                 l+nv+  ++++++ +++GenGaGKSt++k+lag ++p +G+i ldg+ ++   +++  +  i++++qe +lfp+++v +n                +  
  CTQ26979.1  39 LDNVNYRVYRNKVNVLIGENGAGKSTMMKMLAGVETPSSGQIILDGEAVSLqSTHQAEKLGISIIFQELNLFPNMNVMDNifmaneffqkgrinekY-- 135
                 79*******************************************9999884566666779************************999999774433.. PP

                 TC...HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 ee...iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  +   ++ +l++l+l+ ++  ++     +L  G++q v++aral k+ ++l++DEpt+
  CTQ26979.1 136 -QyalAKSLLERLELDVDPYAPL----GELGIGHQQLVEIARALSKDTRVLIMDEPTS 188
                 .3555899999999999899998....*****************************96 PP

  == domain 2  score: 80.8 bits;  conditional E-value: 1.4e-25
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................ 79 
                 l++v+++l++ge+++i G  GaG + L+k l gl+  + Ge++l+g+++ + +  ++l+k ++ +p++   + + + ++++ n                
  CTQ26979.1 291 LNDVTFTLSKGEVIGIYGLLGAGRTELFKGLVGLMPCQRGEVHLNGESIGKsRFQQRLKKGLALVPEDrqgEGVVQMMSIQANmtlsdfslqgfrrawr 389
                 799**********************************************997788999**********888888999999999************9999 PP

                 .....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                      ++++ +++++++l +k  ++t      +sLSgG +q+v+l +al+++p++++lDEpt
  CTQ26979.1 390 wlnpqKEESCVKEMIQQLAIKVSDATLP---ITSLSGGNQQKVVLGKALMTQPQVVFLDEPT 448
                 9987555555999999999998555554...7*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   1.3e-05     0.013       1      22 [.      51      72 ..      51     144 .. 0.71
   2 !   18.8   0.1   1.2e-06    0.0011     223     298 ..     146     218 ..     106     224 .. 0.79
   3 !    9.0   0.0    0.0011       1.1     227     296 ..     411     477 ..     342     477 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                +nvliG Ng+GKS+ ++ l ++
  CTQ26979.1 51 VNVLIGENGAGKSTMMKMLAGV 72
                7*************99999776 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.2e-06
      AAA_21 223 flengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                  le + +   p+ el+ G+++l  ++ al  +    ++l+ DEp + L  + ++ l++++ +l+r+g+ +i  +H 
  CTQ26979.1 146 RLELDVDPYAPLGELGIGHQQLVEIARALSKDT---RVLIMDEPTSALSQSEVKVLFKVIAQLKRRGVTIIYISHR 218
                 555566667799999999999966666666544...***************************************6 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0011
      AAA_21 227 gdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltT 296
                  ++  lp+++lS G ++   l  al  ++    ++++DEp  g++  + + ++ l+ k +++ g  v++++
  CTQ26979.1 411 VSDATLPITSLSGGNQQKVVLGKALMTQP---QVVFLDEPTRGIDVGAKTDVYHLIgKMAQQ-GLAVMFSS 477
                 45778999**********88888888877...9************99999999999555544.77777765 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.2   7.1e-07   0.00067      23     212 ..      48     232 ..      40     239 .. 0.78
   2 ?   -0.6   0.0       0.8   7.6e+02     123     147 ..     407     431 ..     327     494 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 7.1e-07
                 TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE..EEEEETTEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkge..seykingkevt 119
                  +++++++G+NG+GKs ++  +  v   +s + +   ++ +     ++ ++++k  ++i+f++ +       ++++++ +++  +e  ++ +in+k  +
  CTQ26979.1  48 RNKVNVLIGENGAGKSTMMKMLAGVETPSSGQIILDGEAVS----LQSTHQAEKLGISIIFQELNLF-----PNMNVMDNIFMANEffQKGRINEK-YQ 136
                 5789****************996555544443333333333....36678899999*******9998.....666777777666665555568865.68 PP

                 HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 120 kkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgv 211
                 ++  ++lle+ +++ +      +L  G ++Lv +a  +     k + + ++De  +aL +++vk + +++ + + + + +i is+r e l +   ++ +
  CTQ26979.1 137 YALAKSLLERLELDVDpyaplgELGIGHQQLVEIARAL----SKDTRVLIMDEPTSALSQSEVKVLFKVIAQLKRRgVTIIYISHRLEELMEIGDNITI 231
                 888999********999999999999999999988664....5778899**********************98877589999****8888777666666 PP

                 E CS
                 x RF
       SMC_N 212 t 212
                 +
  CTQ26979.1 232 F 232
                 5 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.8
                 HHHHHHCTT-STTCS-HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiskelLSgGektLval 147
                 ++  +++a + +++LSgG+++ v l
  CTQ26979.1 407 LAIKVSDATLPITSLSGGNQQKVVL 431
                 2233344444455899997654333 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.5   5.8e-07   0.00055      10      44 ..      43      70 ..      42     142 .. 0.75
   2 ?   -1.2   0.1       1.4   1.3e+03     262     305 ..     123     168 ..      88     217 .. 0.55
   3 ?   -3.0   0.0       4.7   4.4e+03     290     307 ..     353     370 ..     334     374 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.8e-07
      AAA_15 10 NFRslkdveidlseeltvliGkNnsGKSsileald 44
                N+R +++      + ++vliG+N++GKS+ +++l 
  CTQ26979.1 43 NYRVYRN------K-VNVLIGENGAGKSTMMKMLA 70
                9999997......6.*****************995 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.4
      AAA_15 262 kilkkkidkikkfnykgkkneeieik..ddeelplnknGsGvqrll 305
                 +++++k    +k +y  +k+ + +++   d + pl + G G q+l+
  CTQ26979.1 123 NEFFQKGRINEKYQYALAKSLLERLEldVDPYAPLGELGIGHQQLV 168
                 3333333333333333333333333354555555555555555555 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.7
      AAA_15 290 eelplnknGsGvqrllll 307
                   +p++++G Gv +++++
  CTQ26979.1 353 ALVPEDRQGEGVVQMMSI 370
                 56899********99987 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0069       6.5      19      40 ..      49      70 ..      35      76 .. 0.80
   2 ?   -1.9   0.0       3.3   3.1e+03      10      43 ..     139     174 ..     132     190 .. 0.64
   3 !    9.2   0.2    0.0012       1.2      14      43 ..     298     325 ..     287     333 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0069
                TEEEEEEESTTSSHHHHHHHHH CS
        TsaE 19 gdvilLeGdLGaGKTtlvrgla 40
                ++v +L G+ GaGK+t+++ la
  CTQ26979.1 49 NKVNVLIGENGAGKSTMMKMLA 70
                67789*************9986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.3
                 HHHHHHHCH...TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  10 lgkklakal...gdvilLeGdLGaGKTtlvrglakal 43 
                 l+k+l + l    d  +  G+LG G  +lv  +a+al
  CTQ26979.1 139 LAKSLLERLeldVDPYAPLGELGIGHQQLVE-IARAL 174
                 5555555554333336667999999988874.44444 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0012
                 HHHCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  14 lakalgdvilLeGdLGaGKTtlvrglakal 43 
                 l k  g+vi ++G LGaG T l +gl+  +
  CTQ26979.1 298 LSK--GEVIGIYGLLGAGRTELFKGLVGLM 325
                 333..889*****************98665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.9e-06    0.0093      15      42 ..      42      69 ..      37      80 .. 0.75
   2 ?    0.5   0.0      0.54   5.1e+02      13      55 ..     292     335 ..     287     340 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.9e-06
      AAA_29 15 htieidlkgatlltGpsGsGKSTllDAi 42
                  +++ ++ + +l+G++G+GKST++  +
  CTQ26979.1 42 VNYRVYRNKVNVLIGENGAGKSTMMKML 69
                556666667899************9555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.54
      AAA_29  13 dghtieidlkgatlltGpsGsGKSTllDAiqalLvpak.kvrfN 55 
                 ++ t++++  +++ + G  G+G + l+  +  l+ +++ +v+ N
  CTQ26979.1 292 NDVTFTLSKGEVIGIYGLLGAGRTELFKGLVGLMPCQRgEVHLN 335
                 55677787555999**********99999999998888777777 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   7.6e-06    0.0072      96     124 ..      46      74 ..      31      90 .. 0.84
   2 ?   -0.8   0.1       1.3   1.3e+03      89     130 ..     290     332 ..     279     341 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.6e-06
                  HCTTSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallpele 124
                  + ++k+ vl+G+ G+GKSt++++l++ ++
   CTQ26979.1  46 VYRNKVNVLIGENGAGKSTMMKMLAGVET 74 
                  4578********************98655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.3
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  +l++++  l++ +++ + G  G+G++ L + l++ +  + gev
   CTQ26979.1 290 KLNDVTFTLSKgEVIGIYGLLGAGRTELFKGLVGLMPCQRGEV 332
                  5677777887779999************999998777777766 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.6e-05     0.015      19      38 ..      49      68 ..      38      73 .. 0.88
   2 ?   -0.6   0.4       1.7   1.6e+03      11      37 ..     292     319 ..     286     323 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.6e-05
      AAA_23 19 kgltlItGpNGaGKTTildA 38
                +++++++G+NGaGK+T +  
  CTQ26979.1 49 NKVNVLIGENGAGKSTMMKM 68
                689*************9976 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.7
      AAA_23  11 rdqeidFsk.gltlItGpNGaGKTTild 37 
                 +d+++ +sk  +  I+G  GaG T ++ 
  CTQ26979.1 292 NDVTFTLSKgEVIGIYGLLGAGRTELFK 319
                 67889998845999********998876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   2.3e-05     0.022      18      50 ..      49      81 ..      42     216 .. 0.63
   2 ?   -0.2   0.0      0.71   6.7e+02      15      49 ..     298     332 ..     294     352 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.3e-05
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrvi 50
                ++v vl G  G+GK+t++k l+ + + + g++i
  CTQ26979.1 49 NKVNVLIGENGAGKSTMMKMLAGVETPSSGQII 81
                6799*****************999988865655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.71
      AAA_30  15 tsgdrvavltGpAGtGKttalkalreaweaaggrv 49 
                  s+  v  + G  G+G t + k+l+ ++  + g+v
  CTQ26979.1 298 LSKGEVIGIYGLLGAGRTELFKGLVGLMPCQRGEV 332
                 4555699999************9998887765555 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00012      0.11       2      45 ..      53      96 ..      53     213 .. 0.85
   2 ?    2.4   0.0      0.15   1.4e+02      51     142 ..     390     480 ..     371     497 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
                EEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT-- CS
   Dynamin_N  2 avvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeee 45
                +++G+  +GKS+++  L g +   +g+++     + lq  ++ e
  CTQ26979.1 53 VLIGENGAGKSTMMKMLAGVETPSSGQIILDGEAVSLQSTHQAE 96
                689******************98899999999999999988776 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.15
                 ..SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEETTS-SEEEEE--..-B-SSSGTTSHHHHHHH.STTEEEEEEEETTS-C CS
   Dynamin_N  51 vkeelkekekkledfsevreeieketekiagankgiskkvillkilsllvkgltlvDlP..Gldsvnkrdqelvkeyi.kkadiilavtsanhdl 142
                 + + +ke++   e +++++ +++++t  i+ +++g +++ ++l +   ++++++++D P  G+d  +k d   v ++i k a+  lav+ ++++l
  CTQ26979.1 390 WLNPQKEESCVKEMIQQLAIKVSDATLPIT-SLSGGNQQKVVLGKALMTQPQVVFLDEPtrGIDVGAKTD---VYHLIgKMAQQGLAVMFSSSEL 480
                 555677888888999999999999999999.77888888889999999*********9988999999998...5666666666666666555544 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   7.8e-06    0.0074      16      76 ..      49     126 ..      43     138 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.8e-06
      AAA_13  16 kriNliYGwNGaGKTtLSrllrslelgetepkfangsi.eitnge................eldirVfNrdFveenls 76 
                 +++N++ G NGaGK+t+ ++l+ +e+ +  +    g+  ++++ +                 +++ V  + F+ ++++
  CTQ26979.1  49 NKVNVLIGENGAGKSTMMKMLAGVETPSSGQIILDGEAvSLQSTHqaeklgisiifqelnlFPNMNVMDNIFMANEFF 126
                 589*********************986665555444323333332344555555555555566666666666666666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00052      0.49       7      26 ..      51      70 ..      46      97 .. 0.90
   2 ?    3.1   0.1      0.11   1.1e+02      58     128 ..     141     215 ..     130     222 .. 0.66
   3 ?   -2.1   0.2       4.6   4.3e+03       7      24 ..     303     320 ..     299     326 .. 0.81
   4 ?    1.1   0.0      0.46   4.3e+02      16      86 ..     339     407 ..     334     446 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00052
      AAA_22  7 ilvvtGesGtGKTtllrrll 26
                + v++Ge G+GK+t +++l+
  CTQ26979.1 51 VNVLIGENGAGKSTMMKMLA 70
                5689*************986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
      AAA_22  58 rellralglelka.erlsseell.ealeqalrarav.ielliiDEaqh.lrs...eealeeLrsllnlsrkgvqliLv 128
                 + ll+ l+l+ +  ++l +  +  ++l + +ra ++ +++li DE    l s    ++l ++   l+  r gv++i++
  CTQ26979.1 141 KSLLERLELDVDPyAPLGELGIGhQQLVEIARALSKdTRVLIMDEPTSaL-SqseVKVLFKVIAQLK--RRGVTIIYI 215
                 55555555555555455555555588888888888899*******98878.5223444444444444..777777766 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 4.6
      AAA_22   7 ilvvtGesGtGKTtllrr 24 
                 ++ ++G  G+G+T l + 
  CTQ26979.1 303 VIGIYGLLGAGRTELFKG 320
                 56799********99875 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.46
      AAA_22  16 tGKTtllrrlleqldeeakaeeerpevv.fvtlpsstsskdl.lrellralglelkaerlsseellealeqal 86 
                 +GK++  +rl++ l  +++ ++ + +vv  + +++ ++++d+ l+ + ra+   +    +++e +++ + q+l
  CTQ26979.1 339 IGKSRFQQRLKKGLALVPEDRQ-GEGVVqMMSIQANMTLSDFsLQGFRRAWRWLNP---QKEESCVKEMIQQL 407
                 6999999999999966655444.666665666666667777766666666664333...46666664444444 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.11   1.1e+02      45      67 ..      47      69 ..      26      84 .. 0.80
   2 ?    9.7   0.1   0.00071      0.67     103     152 ..     171     220 ..     160     231 .. 0.76
   3 ?   -2.5   0.0       3.9   3.7e+03     107     146 ..     437     475 ..     426     491 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.11
   IstB_IS21 45 ekkenivllGpsGvGKshlaial 67
                 +++  vl+G  G+GKs +   l
  CTQ26979.1 47 YRNKVNVLIGENGAGKSTMMKML 69
                56666799********9876655 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00071
   IstB_IS21 103 lkrllkv.dllilDdlgllpldqaeaellfeviekryerrsiiitsnlpfa 152
                 +++l k  ++li+D+  +  l+q e ++lf+vi++   r  +ii     ++
  CTQ26979.1 171 ARALSKDtRVLIMDEP-TSALSQSEVKVLFKVIAQLKRRGVTIIYISHRLE 220
                 4444443389****96.679***************9999999986665555 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.9
   IstB_IS21 107 lkvdllilDdlgllpldqaeaellfeviekryerrsiiit 146
                 ++++++ lD+  +  +d  ++++++++i k  ++   ++ 
  CTQ26979.1 437 TQPQVVFLDEP-TRGIDVGAKTDVYHLIGKMAQQGLAVMF 475
                 56778888875.5678888888888888887766544443 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.4e-05      0.07      25      55 ..      49      79 ..      41      84 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.4e-05
        DLIC 25 gksvlvlGedgsGkttliaklqGveeekkGr 55
                +k  +++Ge+g+Gk+t++  l Gve +  G+
  CTQ26979.1 49 NKVNVLIGENGAGKSTMMKMLAGVETPSSGQ 79
                7888999******************998886 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.5   0.00088      0.83       3     116 ..      54     223 ..      52     243 .. 0.75
   2 ?   -1.0   0.0       2.3   2.1e+03       3      35 ..     306     340 ..     304     371 .. 0.71
   3 ?    0.2   0.0      0.96   9.1e+02      51      66 ..     432     446 ..     396     495 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00088
                 EESSTTSSHHHHHHHHHHH.........HTHEEEEEETTTCSSS....................................................... CS
         AAA   3 lyGppGtGKTllakavake.........lgvefleisgsellsk....................................................... 37 
                 l+G  G GK++++k +a           l+ e ++++ +   +k                                                       
  CTQ26979.1  54 LIGENGAGKSTMMKMLAGVetpssgqiiLDGEAVSLQSTHQAEKlgisiifqelnlfpnmnvmdnifmaneffqkgrinekyqyalaksllerleldvd 152
                 899999999999999999866654444433444444444444446666666667777777777888888888888999999999999999999999999 PP

                 ......STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGST CS
         AAA  38 ......yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkld 116
                        +g + +++ e+ +++++   + +l++DE  +  +++           v++L++++ ++k++   v++i +++r ++l 
  CTQ26979.1 153 pyaplgELGIGHQQLVEIARALSKD--TRVLIMDEPTSALSQS----------EVKVLFKVIAQLKRR--GVTIIYISHRLEELM 223
                 9996666666666666666665555..49******99888777..........69**********994..69*******988764 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.3
                 EESSTTSSHHHHHHHHHHHH..THEEEEEETTTCS CS
         AAA   3 lyGppGtGKTllakavakel..gvefleisgsell 35 
                 +yG  G G+T l k ++  +  ++  + ++g ++ 
  CTQ26979.1 306 IYGLLGAGRTELFKGLVGLMpcQRGEVHLNGESIG 340
                 79999*****9999998876333444666666655 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.96
                 HHHHHTSTSEEEEEET CS
         AAA  51 keakekakpsilfiDE 66 
                  +a    +p ++f+DE
  CTQ26979.1 432 GKALMT-QPQVVFLDE 446
                 333333.599****99 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00018      0.17      12      42 ..      40      70 ..      32      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
      AAA_10 12 qevkgsktnasasliiGdlGnGKSvlakllv 42
                 +v+  ++++   ++iG+ G+GKS ++k+l 
  CTQ26979.1 40 DNVNYRVYRNKVNVLIGENGAGKSTMMKMLA 70
                6788888999999***************986 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00055      0.51       3      33 ..      50      86 ..      48     108 .. 0.78
   2 ?   -2.7   0.0       4.4   4.2e+03     113     136 ..     200     223 ..     195     229 .. 0.80
   3 ?   -3.5   0.0       7.6   7.2e+03      12      28 ..     338     354 ..     336     387 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00055
      AAA_24  3 lkiliyGpsgiGKTtlakel......gpkplfidtek 33
                +  +++G++g+GK+t++k+l          +++d e+
  CTQ26979.1 50 KVNVLIGENGAGKSTMMKMLagvetpSSGQIILDGEA 86
                56689*************9977665555556666665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.4
      AAA_24 113 rllkklqelrknvifiahektrkd 136
                 +++ +l+  + ++i i+h  ++ +
  CTQ26979.1 200 KVIAQLKRRGVTIIYISHRLEELM 223
                 56777888888*******988765 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 7.6
      AAA_24  12 giGKTtlakelgpkplf 28 
                  iGK+ +  +l++  ++
  CTQ26979.1 338 SIGKSRFQQRLKKGLAL 354
                 68999999988443333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0022       2.1      15      50 ..      48      83 ..      37      93 .. 0.78
   2 ?    0.9   0.0      0.25   2.3e+02      23      53 ..     308     338 ..     297     343 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0022
  Zeta_toxin 15 rPklillgGqpGAGKselaellkdelerqgnvvrld 50
                r k+ +l G  GAGKs+++++l+   ++ ++ + ld
  CTQ26979.1 48 RNKVNVLIGENGAGKSTMMKMLAGVETPSSGQIILD 83
                66778899*************998776666666666 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.25
  Zeta_toxin  23 GqpGAGKselaellkdelerqgnvvrldpDd 53 
                 G  GAG +el + l   +  q++ v+l++ +
  CTQ26979.1 308 GLLGAGRTELFKGLVGLMPCQRGEVHLNGES 338
                 778****************99999**99865 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0064       6.1      26      63 ..      53      89 ..      49     106 .. 0.80
   2 ?   -0.3   0.0      0.63   5.9e+02     176     198 ..     130     152 ..     113     155 .. 0.86
   3 ?   -0.5   0.0      0.71   6.7e+02      27      56 ..     306     335 ..     300     357 .. 0.79
   4 ?   -0.8   0.0      0.86   8.1e+02      79     114 ..     410     446 ..     394     449 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0064
  Mg_chelatase 26 llvGppGsGKtmlakrlpsllpplseeealevakiasv 63
                  +l+G  G+GK+ + k l+++ +p s + +l+ ++++ +
    CTQ26979.1 53 VLIGENGAGKSTMMKMLAGVETPSSGQIILDGEAVS-L 89
                  689*****************9999999888776654.3 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.63
  Mg_chelatase 176 keierYlsklsgplldRidlqve 198
                   +  e+Y+  l++ ll+R++l v+
    CTQ26979.1 130 RINEKYQYALAKSLLERLELDVD 152
                   55689**************9885 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.71
  Mg_chelatase  27 lvGppGsGKtmlakrlpsllpplseeeale 56 
                   ++G  G+G+t l k l +l+p    e  l+
    CTQ26979.1 306 IYGLLGAGRTELFKGLVGLMPCQRGEVHLN 335
                   67889**************99877666555 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.86
  Mg_chelatase  79 raphhsaskaalvGggs.kpkpGeislahnGvLfLDE 114
                   +    +   ++l Gg++ k+  G+  +++  v+fLDE
    CTQ26979.1 410 KVSDATLPITSLSGGNQqKVVLGKALMTQPQVVFLDE 446
                   555566667889999765889999999999******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.38
# Mc/sec: 4129.43
//
Query:       CTQ26980.1  [L=206]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-51  174.4   0.1    2.6e-51  174.2   0.1    1.0  1  DUF2291   Predicted periplasmic lipoprotein (DUF2291)


Domain annotation for each model (and alignments):
>> DUF2291  Predicted periplasmic lipoprotein (DUF2291)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2   0.1   1.4e-55   2.6e-51       3     197 ..       9     200 ..       7     201 .. 0.94

  Alignments for each domain:
  == domain 1  score: 174.2 bits;  conditional E-value: 1.4e-55
                 XXXXXXXXXXXXXXXXXXX.....X--HHHHHHHHHHHHHHHHHH--SEEHHHHHHHHHH..-HHHHHHHHEB--TTSSEEEEEEEEEEEEEEEETTE. CS
     DUF2291   3 vallllsgckivkideaakaaekaafdpeayvaeiWdekllpaleekAvdlaellaalka..dpeaagekygkrvgissplvfaVkgtGtvvsvdtesr 99 
                 +a+l+l gc+iv+++e+a+++++ +++++a+ +++W++ ++p++ +kA ++ael++alka  d+++a+++ g+r++ ++p++f+Vk++Gtv++ dt+sr
  CTQ26980.1   9 LAVLALGGCRIVSQQELADLKSP-PNPHMANMDKTWQQSIVPQVVTKARPAAELMSALKAakDIDSACKTLGYRAQDENPCIFYVKVSGTVSKLDTASR 106
                 689********************.**********************************9988************************************* PP

                 .....EEEE-SSS-SS-SEEEES---TTHHHHHH-S--GGG-SSHHHHHHHHHHHHHHHHHCTHHHHHTTC--T-EEEEEEEEEEETT----....EEE CS
     DUF2291 100 agtltvdvdgddgkadvkvqiGpvikGtaiRDalgfidfndFknqidfaqvgtalnkrvkeevlspldrealkGktveftGaftlnkedlil....itP 194
                 +g++t++   d++  +v+vqiGp+++Gt++RD ++ ++++dF++q+ f+++++ +n+++ +++ ++  +++++G++ve++G+f  +++d+++    itP
  CTQ26980.1 107 SGKMTLT---DASVGKVTVQIGPTLRGTQLRDGYSGASYQDFNDQVLFGEYSKNINSQAVKMI-QT--ANVKTGDSVEVYGVF--SAWDIPQtlpeITP 197
                 ******9...566678**********************************************9.33..35666**********..67777777778*** PP

                 EEE CS
     DUF2291 195 vel 197
                 +++
  CTQ26980.1 198 AKI 200
                 986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1765.20
//
Query:       CTQ26981.1  [L=311]
Description: putative ribose ABC transport system sugar-binding component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-51  173.5  13.4    7.6e-51  173.2  13.4    1.1  1  Peripla_BP_4    Periplasmic binding protein domain
    2.2e-19   70.0   3.2    2.9e-19   69.6   3.2    1.2  1  Peripla_BP_1    Periplasmic binding proteins and sugar bindin
    2.8e-06   27.8   0.2    6.3e-06   26.6   0.1    1.6  2  Peripla_BP_3    Periplasmic binding protein-like domain
    0.00014   22.1   0.1    0.00036   20.8   0.1    1.7  1  PucR            Purine catabolism regulatory protein-like fam
  ------ inclusion threshold ------
      0.042   13.7   3.2       0.11   12.4   0.4    2.5  3  LpxI_N          LpxI N-terminal domain
       0.43   10.8   3.3        2.8    8.2   0.1    2.8  2  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
       0.48   11.0   6.6        6.1    7.5   0.0    3.2  4  ATPgrasp_N      ATP-grasp N-terminal domain
       0.52   11.0   4.4       0.61   10.7   0.4    2.5  2  NAD_binding_3   Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.2  13.4   3.4e-54   7.6e-51       2     257 ..      29     282 ..      28     283 .. 0.95

  Alignments for each domain:
  == domain 1  score: 173.2 bits;  conditional E-value: 3.4e-54
                   EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEE CS
  Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerla 98 
                    ++v + +np+  +  +g+ e a++lg+++tv    + d+++Q++ i++ai k+v gii++ +dsta  +a++kak+aGIpVv +++++ +++  l 
    CTQ26981.1  29 MIMVNSLDNPYYASEAKGASEKAQALGYKTTVL-SHGEDVKKQNELIDTAIGKKVQGIILDNADSTASVAAIEKAKKAGIPVVLINREIPVDDVALE 124
                   68999*****9999******************7.777777************************************************888888899 PP

                   EEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSCCH CS
  Peripla_BP_4  99 yvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanp.ldgilaandgm 194
                    ++ +n++aG   a++ +ek+ +k gk++ l+ ++ d+n   r + f++v+++yp++  va++++   +  ++++ ++++l+a+p ++g+++ n+  
    CTQ26981.1 125 QITHNNFQAGSEVANVFVEKMAEK-GKYAELTCNLADNNCVTRSKSFHQVIDQYPDMVSVAKQDA-KGTLIDGKRIMDSILQAHPdVKGVICGNGPV 219
                   ***********************9.******************************9999997556.9****************966*********** PP

                   HHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHT.T- CS
  Peripla_BP_4 195 aegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallk.Gk 257
                   a+ga++al+aa++++ + v+g+D+++  ++a+k+Gt++atv  +++++++++v  + ++l+ G+
    CTQ26981.1 220 ALGAIAALKAANRSDVI-VVGIDGSNDERDAVKAGTLQATVMLQAQAIAAQGVTDLDNYLQkGE 282
                   ************99776.*****************************************98555 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   3.2   1.3e-22   2.9e-19       2     257 ..      26     279 ..      25     303 .. 0.77

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 1.3e-22
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GG..HHHHHHHHHHT-EEEEESS--B-T.TT CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdts..fdditakaesgipvialedaidap.dg 94 
                    ++ +++ +ld+P+++++ kg+++ a+++g+++++l  ge+ + + + id    k++ g+i+  +d    + +i + +++gipv+++++ i  + ++
    CTQ26981.1  26 GTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTVLSHGEDVKKQnELIDTAIGKKVQGIILDNADSTasVAAIEKAKKAGIPVVLINREIPVDdVA 122
                   678999******************************999998877699**************755444338999999999*********99666699 PP

                   S-EEEE-HHHHHHHHHHHHHHHHHHHT..G.EEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSS..SHHHHHHHHHHHHTT-TT-SEEE- CS
  Peripla_BP_1  95 vPcvipddtqageestqkLiaeghkrp..i.allegpesaltakervqGflaalaeaGlevkdvhvalgsn..diedaaealnelleshPeidaiva 186
                   +  +  +++qag e     ++++ +++    +  ++ +++  ++ +   f + + +       v va  +   +  d++  + ++l+ hP+++ +++
    CTQ26981.1 123 LEQITHNNFQAGSEVANVFVEKMAEKGkyAeLTCNLADNNCVTRSKS--FHQVIDQY---PDMVSVAKQDAkgTLIDGKRIMDSILQAHPDVKGVIC 214
                   99999**********************85256666666666666666..99999999...24556665554116779******************** PP

                   SSHHHHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTS....SS--SEEEEEEE-HHHH....HHHHHHHHHH CS
  Peripla_BP_1 187 indeaalGavlalkkeGrlkikeevdsfiesvvvydgLkk....aqdtilelsplaviqlprellGrkasdmvlq 257
                   +n  +alGa+ alk+++r      ++ +i +        +    +++++l+  ++  +q++   +G +  d+ lq
    CTQ26981.1 215 GNGPVALGAIAALKAANRSD---VIVVGIDGSN------DerdaVKAGTLQATVMLQAQAI-AAQGVTDLDNYLQ 279
                   *****************622...2222233222......2222255666666666666666.5566666666666 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.8     4e+03      33      96 ..      47     105 ..      28     109 .. 0.46
   2 !   26.6   0.1   2.8e-09   6.3e-06      71     155 ..     203     289 ..     142     299 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.8
                   HHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEE..SSCCHHHHHHHHHCCT CS
  Peripla_BP_3  33 frqaleelglplnetvvaaddpaaaaaaraalllqalklaalPtAvia..asDelAlgvlqalrea 96 
                   + + +++lg++  +    +d +  ++ ++ a+       +++ +++i   a+  + +++++ ++ a
    CTQ26981.1  47 ASEKAQALGYKTTVLSHGEDVKKQNELIDTAI-------GKKVQGIILdnADSTASVAAIEKAKKA 105
                   44444444444444433333333222222222.......224566666433333334444555555 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 2.8e-09
                   HCC.-SE..EEEESSCCHHHHHHHHHCCTT--TTTTEEEEBSS--SCC.CSSSS.--.EEEE--HHHHHHHHHHHHHHHHTT---S--EEE CS
  Peripla_BP_3  71 laa.lPt..AviaasDelAlgvlqalreaglrvPedlsvigfddsela.alssP.pl.TtvrqpleelGraaaellldllegekappeqvl 155
                   l + +P+  +vi+ +  +Alg+++al++a+ +   d+ v+g+d+s+     +    l  tv ++++ ++ + ++ l  +l++ ++p++q++
    CTQ26981.1 203 L-QaHPDvkGVICGNGPVALGAIAALKAANRS---DVIVVGIDGSNDErDAVKAgTLqATVMLQAQAIAAQGVTDLDNYLQKGEKPAKQRV 289
                   2.1367566**********************5...*********988854443324478*********************99999999987 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   1.6e-07   0.00036      47     110 ..      58     122 ..      56     128 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.6e-07
        PucR  47 ttglalkddpealaelvrelaeagvaaLviklgr.eipeelieaadelglPlielpeevpfveii 110
                 tt l+  +d +++ el++    ++v ++++ + + + + ++ie a+++g+P++ +++e+p +++ 
  CTQ26981.1  58 TTVLSHGEDVKKQNELIDTAIGKKVQGIILDNADsTASVAAIEKAKKAGIPVVLINREIPVDDVA 122
                 77888889************************745999**********************99996 PP

>> LpxI_N  LpxI N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.1   9.1e+03      17      37 ..      49      69 ..      47      76 .. 0.74
   2 ?    1.0   0.1      0.17   3.7e+02      13      33 ..      96     116 ..      93     148 .. 0.76
   3 ?   12.4   0.4   4.9e-05      0.11       3      53 ..     211     262 ..     210     269 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.1
      LpxI_N 17 eaakaagrevvvvalegeade 37
                e+a+a g+++ v+++ + +++
  CTQ26981.1 49 EKAQALGYKTTVLSHGEDVKK 69
                678888999988888776655 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.17
      LpxI_N  13 llvaeaakaagrevvvvaleg 33 
                 ++++e+ak+ag++vv++  e 
  CTQ26981.1  96 VAAIEKAKKAGIPVVLINREI 116
                 568999*******99987654 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 4.9e-05
      LpxI_N   3 gliAGsGrlPllvaeaakaagr.evvvvalegeadeelekivdevaevsvgq 53 
                 g+i+G+G  +l +++a+kaa+r +v+vv++ g+ de+ + ++ + +   + q
  CTQ26981.1 211 GVICGNGPVALGAIAALKAANRsDVIVVGIDGSNDERDAVKAGTLQATVMLQ 262
                 89*****************88769********99988776666665555555 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0013       2.8      14      61 ..      72     115 ..      67     128 .. 0.80
   2 ?    2.2   0.5      0.09     2e+02      25      59 ..     210     241 ..     193     291 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0013
                     HHHHHHHHTT--EEEEEEBTTTB--H.HHHHHHHHHHTTT-EEEEEESS CS
  Asparaginase_C  14 kvlkallkkgakGvvlegtGvGnlps.allealkeakargivvvatsqc 61 
                     ++++ ++ k+++G++l      n+ s a + a+++ak++gi+vv++ ++
      CTQ26981.1  72 ELIDTAIGKKVQGIILD-----NADStASVAAIEKAKKAGIPVVLINRE 115
                     67777777777777777.....44444788999999999*****99987 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.09
                     -EEEEEEBTTTB--HHHHHHHHHHHTTT-EEEEEE CS
  Asparaginase_C  25 kGvvlegtGvGnlpsallealkeakargivvvats 59 
                     kGv+    G+G +    + alk a +++++vv + 
      CTQ26981.1 210 KGVI---CGNGPVALGAIAALKAANRSDVIVVGID 241
                     5554...5888888889999999988888888553 PP

>> ATPgrasp_N  ATP-grasp N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.4         8   1.8e+04      67      77 ..      15      25 ..      10      25 .. 0.79
   2 ?    7.5   0.0    0.0027       6.1       2      34 ..      49      79 ..      48      98 .. 0.76
   3 ?    6.3   0.0    0.0063        14       2      25 ..     100     123 ..      99     148 .. 0.76
   4 ?   -2.0   0.0       2.5   5.7e+03      33      33 ..     259     259 ..     227     301 .. 0.54

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 8
                GHHHHHHHHHH CS
  ATPgrasp_N 67 avplvArlaea 77
                a+ ++A +ae+
  CTQ26981.1 15 AFTFAAHAAEK 25
                67889999986 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0027
                HHHHHTT-EEEEEEETTS----S-TT.EEEEEE CS
  ATPgrasp_N  2 eaAkaLGikvvlvdeedewapeelaelvekfip 34
                e+A+aLG k++++++ +++++   +el++++i 
  CTQ26981.1 49 EKAQALGYKTTVLSHGEDVKK--QNELIDTAIG 79
                89***********99987765..4445555554 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0063
                 HHHHHTT-EEEEEEETTS----S- CS
  ATPgrasp_N   2 eaAkaLGikvvlvdeedewapeel 25 
                 e+Ak+ Gi vvl+++e  ++   l
  CTQ26981.1 100 EKAKKAGIPVVLINREIPVDDVAL 123
                 89************9944443333 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 2.5
                 E CS
  ATPgrasp_N  33 i 33 
                 +
  CTQ26981.1 259 V 259
                 2 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4   0.00027      0.61      58     112 ..      77     135 ..      42     143 .. 0.81
   2 ?    1.2   0.2      0.26   5.7e+02       1      56 [.     215     268 ..     215     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00027
                    H....S-EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGGG-HHHHHHHTSSSTTS-- CS
  NAD_binding_3  58 l....dpdvvVEcasseavaelvlkaLkagkdvvtankgaladealyeeLreaaeanga 112
                    +       +++++a s+a    ++ka kag+ vv  n +  +d++  e++  +  ++g 
     CTQ26981.1  77 AigkkVQGIILDNADSTASVAAIEKAKKAGIPVVLINREIPVDDVALEQITHNNFQAGS 135
                    344424789*********************************99999999887766665 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.26
                    --SHHHHHHHHHHHH---SSEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHH CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqseielelvavadrdsllskdrkallasealtldlddlia 56 
                    G G ++ + +++lk+ ++  ++ +v++  ++  ++++ ka + +++++l+ ++++a
     CTQ26981.1 215 GNGPVALGAIAALKAANRS-DVIVVGIDGSN-DERDAVKAGTLQATVMLQAQAIAA 268
                    6788999999999999997.99999999999.777778888888888888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 2646.41
//
Query:       CTQ26982.1  [L=106]
Description: hypothetical protein CH1034_150021 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 833.74
//
Query:       CTQ26983.1  [L=506]
Description: Glycerol kinase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-59  202.0   0.0    1.5e-59  201.6   0.0    1.2  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
    2.4e-43  148.2   1.8    2.8e-43  148.0   0.7    1.7  2  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.6   0.0   1.6e-63   1.5e-59       2     245 .]       9     253 ..       8     253 .. 0.97

  Alignments for each domain:
  == domain 1  score: 201.6 bits;  conditional E-value: 1.6e-63
                 EEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTT.EESSEEE-TT CS
      FGGY_N   2 ilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDknd.kpLynailwk 99 
                 i++lD Gtt+ ka+vld  gkv+ + +++l++++p+ gw+eq+ e++  a   +i++++++    +++++a++is+qre+++ + ++  +p+  ai+w+
  CTQ26983.1   9 IIALDEGTTNAKAVVLDSRGKVIVKFSQPLAIQTPRDGWVEQSGEALVTASLTVIASAVAHV--GAENVAALAISNQRETAIGWYRDSgEPINAAITWQ 105
                 79********************************************************9988..9********************9999********** PP

                 --TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHC....EEEEHHHHHHHHHCT..--EEEHHHHCTTTSEETTTTEE-HHH CS
      FGGY_N 100 drrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekie....kflliddyLiwrLtg..qfvtdvtnasesmlfnikklewdeel 192
                 ++r+a+ ++ l+++ +e++++  tgl++ + f++sk++Wl++   +   ++e    + ++id++L w Lt   +f++d++na++++l+n++ +ewd+e+
  CTQ26983.1 106 CTRSAAFCDTLRHDRQEQHIKRATGLPIAPLFSASKMRWLLDATVDGHLRAErgeiCLGTIDSWLLWNLTAgeAFCCDYSNAARTQLLNLHRGEWDDEM 204
                 ******************************************9998888888899***************888************************** PP

                 HHHTT--GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 193 lailgipeelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 la++gip+++LP +++ss  +g++k  +a       g+p+++  gD  aa++G
  CTQ26983.1 205 LALFGIPRAALPDIKPSSGLFGHTKGLAAIPD----GIPIMSMIGDSHAALFG 253
                 ***********************998777666....6***************9 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.64   5.7e+03      36      63 ..     152     179 ..     143     193 .. 0.77
   2 !  148.0   0.7   3.1e-47   2.8e-43       2     196 ..     263     454 ..     262     456 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.64
      FGGY_C  36 peyalegsiavagslvawlldnlglree 63 
                 ++  +e +  ++g +  wll nl + e+
  CTQ26983.1 152 GHLRAERGEICLGTIDSWLLWNLTAGEA 179
                 5666778888999998899999866544 PP

  == domain 2  score: 148.0 bits;  conditional E-value: 3.1e-47
      FGGY_C   2 kvslGTssflll.vgtkpvisehglltpva.gedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpafsgl 98 
                 k+++GT+s +++ v++ ++ ++++l+t+va ++  + +++leg i  +g++vaw+ d  gl  e++ a+     l      ++v ++ gv+fvpa++gl
  CTQ26983.1 263 KATYGTGSSVMApVKSAQC-DIDALATTVAwHDGDQLVWGLEGNIPHTGDAVAWMADSTGL-SELSAAELA-HELN--TLPASVDSTLGVYFVPALTGL 356
                 78**********9999999.**********8777899*********************988.444444443.3333..4568888889*********** PP

      FGGY_C  99 rapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAav 196
                  ap wd++arg+i gls++ + ah++rAale++ +q+++++ a+ ++++  l+ l+vdGG ++nd lmq +Ad+lg+pV r +  e  a+GaA+lA  
  CTQ26983.1 357 GAPWWDDSARGVICGLSRGVKRAHLIRAALESITYQIADVVVAMRQHEEFTLTALMVDGGPTNNDWLMQYQADLLGCPVMRSDVPELSAIGAALLARK 454
                 ***********************************************************************************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3959.05
//
Query:       CTQ26984.1  [L=316]
Description: putative transcriptional regulator of sorbose uptake and utilization genes [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-63  213.8   0.0    2.7e-63  213.5   0.0    1.0  1  Sugar-bind    Putative sugar-binding domain
      9e-05   22.3   0.0    0.00027   20.8   0.0    1.8  1  MarR_2        MarR family
    0.00083   19.3   0.1     0.0025   17.8   0.0    1.8  2  HTH_Crp_2     Crp-like helix-turn-helix domain
    0.00085   19.1   0.1     0.0027   17.4   0.1    1.9  1  HTH_23        Homeodomain-like domain
     0.0016   18.3   0.0     0.0039   17.1   0.0    1.5  1  MarR          MarR family
      0.002   17.7   0.0     0.0057   16.2   0.0    1.8  2  HTH_24        Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.014   15.6   0.2       0.21   11.9   0.1    2.3  2  KORA          TrfB plasmid transcriptional repressor
      0.018   15.1   0.0      0.037   14.1   0.0    1.6  1  KorB          KorB domain
      0.021   14.9   0.0      0.056   13.5   0.0    1.7  1  HTH_29        Winged helix-turn helix
      0.021   14.3   0.1      0.046   13.2   0.1    1.5  1  Sigma70_r4    Sigma-70, region 4
      0.041   13.6   0.1       0.17   11.6   0.1    2.0  2  HTH_38        Helix-turn-helix domain
      0.055   13.2   0.1       0.11   12.2   0.1    1.5  1  Sigma70_r4_2  Sigma-70, region 4


Domain annotation for each model (and alignments):
>> Sugar-bind  Putative sugar-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.5   0.0   1.8e-66   2.7e-63       7     254 ..      63     314 ..      58     315 .. 0.95

  Alignments for each domain:
  == domain 1  score: 213.5 bits;  conditional E-value: 1.8e-66
                 HHHHHHHHHHHT-SEEEEESSTSTT..CHHHHHHHHHHHHHHHHH--TTEEEEE-.SSHHHHHHHHHTHHCCHTCEEEEESBSECSSCHCGSHHHHHHH CS
  Sugar-bind   7 leleerLkekfglkeaivvpddade..edvlealgraaaqllesllkdgdvvgvg.wGrtlsavaealtpkslrdvkvvqliGglsekvsaevnevvar 102
                 l+le+ L++++glk+a+vv +++++   ++++a+g aaa++le +l+++d +gv+ w  t++a++++++ ++l+   v+ql+Gg++++++ ++  ++++
  CTQ26984.1  63 LKLEKGLEDRYGLKQAVVVDTEEEAsdHTIKRAIGSAAAHYLETRLRPKDLIGVSsWSSTIRAMVDEVHAQNLKASGVIQLLGGVGPNGNVQATILTQT 161
                 79*****************88887664777************************559****************************************** PP

                 HHHHCTSEEE--SSBSB-SSHHHHHHHHTSHHHHHHHHHHHT-SEEEEE-EEHCCCCHHHCCTTS-HHHHHHH.HHTTEEEEETTEEEETTS-BCCHCH CS
  Sugar-bind 103 lAqklggeyellpaPavlssaelreallaersikevlelakkadvalvGiGsaseeaklvkrgflteeelael.reegaVGeilgrffDaeGevvetel 200
                 lAq+l++++ llp   +  s e+r+ lla++ +++v++ ++++d+a+vGiG ++ ++ l ++g +  e++ ++ +++gaVG+i+ +++D++G++v  + 
  CTQ26984.1 162 LAQRLNCDAWLLPSQSIEGSMEERNRLLASKDVADVVSRFDEVDIAIVGIGILEPSQLLKTSGNYYHEDMLQVlAARGAVGDICLHYYDKNGHPVLRDD 260
                 *******************************************************99999988777666666549************************ PP

                 CCCBSB--HHHHTTSSEEEEE--SGGGHHHHHHHHHTTS-SEEEEEHHHHHHHH CS
  Sugar-bind 201 nerviglsledlrkipkviavAggesKaeAilaaLrgglinvLitdestAkalL 254
                 ++ vig+ le+++k p+v+a+Agg++K++Ai++aL+gg+i+vLitd  tA++l+
  CTQ26984.1 261 EDPVIGMALEKVKKCPNVVALAGGTDKVAAIKGALTGGYIDVLITDYPTARMLV 314
                 ****************************************************98 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.8e-07   0.00027      16      53 ..      18      53 ..      13      72 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.8e-07
                CTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2 16 rrpgrdltvgelarrlglsksavsrilkrLvaaGLver 53
                  +g    ++++a+ l ls+s vsr++ r+++ G v  
  CTQ26984.1 18 YLEG--RKQSDIAQLLSLSQSFVSRAITRCQKEGVVKI 53
                5556..479*************************9953 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.7e-06    0.0025      24      53 ..      24      55 ..      18      72 .. 0.77
   2 ?   -3.6   0.0         8   1.2e+04      44      54 ..     134     145 ..     133     147 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.7e-06
                HHHHHHHTTSSHHHHHHHHHHHHHTTSEE..E CS
   HTH_Crp_2 24 qeelAsmlGltretvsrilseLkreglis..r 53
                q ++A++l l+++ vsr++++ ++eg+++   
  CTQ26984.1 24 QSDIAQLLSLSQSFVSRAITRCQKEGVVKisV 55
                89*************************98531 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8
                 HHHHTTSEE.ET CS
   HTH_Crp_2  44 eLkreglis.rg 54 
                  Lk  g+i+  g
  CTQ26984.1 134 NLKASGVIQlLG 145
                 699999999545 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.8e-06    0.0027      10      46 ..      13      50 ..       2      52 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.8e-06
      HTH_23 10 illlla.eGlsvreIAreLgvsrrTvyrwlkryreeGl 46
                i+ l+  eG  +++IA++L  s++ v+r + r ++eG+
  CTQ26984.1 13 IATLYYlEGRKQSDIAQLLSLSQSFVSRAITRCQKEGV 50
                44444437*************************99995 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.6e-06    0.0039      10      47 ..      14      51 ..       8      53 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.6e-06
                HHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR 10 rilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                ++ly+ ++ ++s++a  l++s+s v+r+++r  k+G +
  CTQ26984.1 14 ATLYYLEGRKQSDIAQLLSLSQSFVSRAITRCQKEGVV 51
                79*****************************9999976 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.8e-06    0.0057      19      48 .]      23      52 ..      20      52 .. 0.95
   2 ?   -2.9   0.0       3.6   5.4e+03      39      48 .]     133     142 ..     131     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.8e-06
      HTH_24 19 sqreLAerlglSpstvnrrlkrLeeeGlIk 48
                 q+++A+ l lS+s v+r + r+++eG++k
  CTQ26984.1 23 KQSDIAQLLSLSQSFVSRAITRCQKEGVVK 52
                599*************************97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.6
      HTH_24  39 krLeeeGlIk 48 
                 ++L+ +G+I+
  CTQ26984.1 133 QNLKASGVIQ 142
                 78999**995 PP

>> KORA  TrfB plasmid transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00014      0.21      21      55 ..      11      45 ..       7      52 .. 0.91
   2 ?    1.2   0.0      0.31   4.6e+02      42      79 ..      86     124 ..      74     129 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
        KORA 21 veiargvLVegkkqadvatelgltkqavsqavkrv 55
                v+ia     eg+kq+d+a+ l l++  vs+a+ r 
  CTQ26984.1 11 VKIATLYYLEGRKQSDIAQLLSLSQSFVSRAITRC 45
                578888899**********************9885 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.31
        KORA  42 gltkqavsqavkrvwaahaere.epaglerVsvllpeee 79 
                   + + +++a++ + a + e   +p++l  Vs + +  +
  CTQ26984.1  86 EASDHTIKRAIGSAAAHYLETRlRPKDLIGVSSWSSTIR 124
                 56777889999999999987666********99977655 PP

>> KorB  KorB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.5e-05     0.037       3      34 ..      21      52 ..      19     103 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.5e-05
        KorB  3 gvkqadIAkaLGksksfvslylklldvpdylr 34
                g kq+dIA+ L+ s+sfvs+     + +  ++
  CTQ26984.1 21 GRKQSDIAQLLSLSQSFVSRAITRCQKEGVVK 52
                78*****************9988888777766 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.8e-05     0.056       9      41 ..      19      50 ..      14      59 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.8e-05
      HTH_29  9 aeGvstvsqiAkllglsrrtvyrwlkrfeegGl 41
                 eG +  s+iA+ll ls + v r++ r++++G+
  CTQ26984.1 19 LEGRK-QSDIAQLLSLSQSFVSRAITRCQKEGV 50
                69998.**************************6 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.1e-05     0.046      14      43 ..      15      44 ..       6      47 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.1e-05
                HHHHTTT--HHHHHHHHTS-HHHHHHHHHH CS
  Sigma70_r4 14 elrfgeglTleEIgerlgiSrerVrqiekr 43
                +l+++eg+ +++I++ l +S++ V++ ++r
  CTQ26984.1 15 TLYYLEGRKQSDIAQLLSLSQSFVSRAITR 44
                699**********************98887 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00012      0.17      12      43 ..      12      44 ..      10      44 .. 0.91
   2 ?   -2.9   0.0       4.1   6.1e+03      26      33 ..     162     169 ..     161     172 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
      HTH_38 12 eIerll.aeGlslreIArrLgrspsTIsRElkR 43
                +I++l+  eG  +++IA++L  s s +sR + R
  CTQ26984.1 12 KIATLYyLEGRKQSDIAQLLSLSQSFVSRAITR 44
                69999626*********************9988 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.1
      HTH_38  26 IArrLgrs 33 
                  A+rL+++
  CTQ26984.1 162 LAQRLNCD 169
                 46666664 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   7.4e-05      0.11      20      49 ..      15      44 ..      12      45 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.4e-05
                  HHHHTS---HHHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2 20 llryleglsykEIAellgisegtVksrlsR 49
                  +l+yleg ++ +IA+ll +s + V +++ R
    CTQ26984.1 15 TLYYLEGRKQSDIAQLLSLSQSFVSRAITR 44
                  79******************9988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2440.73
//
Query:       CTQ26985.1  [L=276]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-40  137.2   0.0    8.6e-40  136.7   0.0    1.2  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
    2.1e-11   43.5   0.1    9.7e-06   25.0   0.1    2.8  3  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
    5.2e-08   32.2   0.0    7.2e-08   31.7   0.0    1.1  1  E1_dh            Dehydrogenase E1 component
    2.3e-06   27.5   0.2      6e-06   26.1   0.2    1.7  1  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP


Domain annotation for each model (and alignments):
>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   0.0   1.9e-43   8.6e-40      18     270 ..      28     268 ..      12     274 .. 0.92

  Alignments for each domain:
  == domain 1  score: 136.7 bits;  conditional E-value: 1.9e-43
                      HHHT-S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-SS-SS--TTTSTT--S-- CS
  Transketolase_N  18 ekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrqlgsktpGhPelghtagvevtt 111
                      ++  +Gh Ga l+ +++ ++l+ ++l+++P+  +  +RD ++ s Gha+   Y +l   G+ +++e l+ +++ +s+ pGhP  ++t+g+e  t
       CTQ26985.1  28 NSPAGGHTGADLSQVELLTALYFRVLNVAPDRLDDPQRDIYIQSKGHAVGCYYCVLAEAGF-FPVEWLETYQHANSHLPGHPVRQKTPGIELNT 120
                      45568*******************************************************9.899***************************** PP

                      -STTHHHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTEEG.GGT--S-HHHHHH CS
  Transketolase_N 112 GPLGqGianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidGet.eisftedvakrfe 204
                      G LG G+  avglala k+ ++          +  ++ i gDg l eG   ea+  a++ +L++L+++ D+n++ + G t ei++t+  a++++
       CTQ26985.1 121 GALGHGLPVAVGLALAAKKSNS----------TRRIFLITGDGELAEGSNWEAALAAAHYGLDNLVIINDKNNLQLAGPTrEIMNTDPLADKWR 204
                      ***************9887654..........5679******************************************993466778899**** PP

                      HTT-EEEEETTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTSTTTTTSGGGTSS---HHHHHH CS
  Transketolase_N 205 aygWhvievedgedveaikaaieeakaekdkPsliklrtviGygspakagtedvhGapLgedevaa 270
                      a+g  v e ++g+d++++ +aie  k+e  kP +i  +t+ G g    +g  + h    + +e+a 
       CTQ26985.1 205 AFGMAVSE-CEGNDMASVISAIEGLKQE-GKPNVIIANTTKGAGISFIQGRPEWHHRVPKGEEIAL 268
                      ****9988.999*************999.****************999**9999987777777776 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.1e-06     0.023      16      64 ..       9      60 ..       4      69 .. 0.82
   2 !   25.0   0.1   2.2e-09   9.7e-06     107     172 ..     117     182 ..      96     195 .. 0.85
   3 ?    0.8   0.0     0.053   2.4e+02     245     270 ..     213     238 ..     202     241 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.1e-06
  DXP_synthase_N 16 eeleelaeelreflies..vsktggHlasnLgvveLtlalh.yvfdtpkDkl 64
                    ++le+ a+ +r+++++    s  ggH ++ L+ veL  al+ +v++   D+l
      CTQ26985.1  9 QTLERKARAVRRHIVRLnaNSPAGGHTGADLSQVELLTALYfRVLNVAPDRL 60
                    67888899999999865115778****************9647888888875 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 2.2e-09
  DXP_synthase_N 107 afeagHsstsisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNe 172
                      +++g  +  + +a+Gla a++++++++++  + GDg l+ G  +ea   +++   + lvi+Nd +
      CTQ26985.1 117 ELNTGALGHGLPVAVGLALAAKKSNSTRRIFLITGDGELAEGSNWEAALAAAHYGLDNLVIINDKN 182
                     5666777778999**********************************9999999999999999965 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.053
  DXP_synthase_N 245 idGhdleelikvleevkklkgpvllh 270
                      +G+d++++i+++e +k+  +p ++ 
      CTQ26985.1 213 CEGNDMASVISAIEGLKQEGKPNVII 238
                     68****************99998875 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.6e-11   7.2e-08      91     204 ..     110     225 ..      88     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.6e-11
                 BTT...BEEE-SSTTTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEE.EEESEETTEEHHHH-S---GGG..TTTTS CS
       E1_dh  91 ekes.rilggngivgaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvv.eNNkygisTeaekasaskeladrargvgi 187
                 +++   i    g +g   p++ G+alaak  + ++  +l++GDg  ++G  +ea+  aa ++l  + ++   N+  +  ++++  +++ lad+ r++g+
  CTQ26985.1 110 RQKTpGIELNTGALGHGLPVAVGLALAAKKSNSTRRIFLITGDGELAEGSNWEAALAAAHYGLDNLVIInDKNNLQLAGPTREIMNTDPLADKWRAFGM 208
                 333336788889999999*********************************************985555145888999999****************** PP

                 -EEEEETTSHHHHHHHH CS
       E1_dh 188 pglrVdgnDplavyeAv 204
                 +  + +gnD+  v +A 
  CTQ26985.1 209 AVSECEGNDMASVISAI 225
                 *************9986 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.2   1.3e-09     6e-06      26      88 ..     119     187 ..      93     239 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.3e-09
                   TTS-TTTHHHHHHHHHHH....STTSEEEEEEEHHHHHHT..GGGHHHHHHTT-SEEEEEEE-SBCCCH CS
  TPP_enzyme_C  26 glgtmGyglpaAiGakla....kpdrevvaivGDGgflmi..lqelatavrrnlpitvvvlnNegygmt 88 
                    +g++G glp+A+G++la    +  r+++ i+GDG ++     ++   a+ ++l+ +v++ + + +++ 
    CTQ26985.1 119 NTGALGHGLPVAVGLALAakksNSTRRIFLITGDGELAEGsnWEAALAAAHYGLDNLVIINDKNNLQLA 187
                   589**************644333369**********875443778888999999888888776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2095.26
//
Query:       CTQ26986.1  [L=311]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-29  100.1   0.2    1.2e-28   99.5   0.2    1.3  1  Transketolase_C  Transketolase, C-terminal domain
    1.8e-20   73.4   0.0      3e-20   72.6   0.0    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
    1.2e-05   25.6   0.0    2.4e-05   24.6   0.0    1.5  1  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma


Domain annotation for each model (and alignments):
>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.2     2e-32   1.2e-28       1     124 []     181     303 ..     181     303 .. 0.93

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 2e-32
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdglda 94 
                      g + +lreg+dv+lva+Gs+v+e++eAa++L++ gi+a+Vv++++++p+D++ +l++++  g +++vee++++gG+gs va++lae   +g+  
       CTQ26986.1 181 GAVLTLREGEDVALVATGSTVHEVVEAAQQLADLGIQAKVVSVPSIRPCDTAALLAALRPCGSVITVEEHNVNGGLGSLVAEVLAE---AGVGI 271
                      568899********************************************************************************...***** PP

                      EEEEEEE-SS.SSSS.GHHHHHHHTT-SHHHH CS
  Transketolase_C  95 pvkrvggpdv.iepg.saeelekafgldaeki 124
                      p kr+g+pd  +  +  +  l k++g+da+++
       CTQ26986.1 272 PLKRLGIPDGeYAAAaDRGWLRKHHGFDAASV 303
                      *********97554404559999999999886 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0     5e-24     3e-20      10     175 ..      12     168 ..       6     170 .. 0.89

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 5e-24
                   HHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHHHCHHHHHT-- CS
  Transket_pyr  10 aealaellkedpevvligaDvaggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqairsgeakgklk 106
                    ea+ + ++++ ++v + aD++     + + ++++    r++++gi+Eq ++g+a+G+al g  +v v +  + F+     +a+++i  ++   +++
    CTQ26986.1  12 VEAFMAAVERGVDLVPVVADSTSTAKIAPFIKQFPG---RLVNVGIAEQSMVGTAAGLALGG--KVAVTCNAAPFLI---SRANEQIKVDVCYNNTN 100
                   567777777777777777777766666666666666...***********************..8***********9...9**************** PP

                   EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEE CS
  Transket_pyr 107 vg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksll 175
                   v+   + ++ ++g  + +h+s+ ++a++r   ++++++Ps+p e+++++  a++  +++Pv++rl  ++l
    CTQ26986.1 101 VKlFGLNAGASYGPLASTHHSIDDLAVMRGFGNIQIFAPSTPCECRQIIDYALA--YQGPVYIRLDGKAL 168
                   **9***************************************************..778*****976655 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0     4e-09   2.4e-05       2      76 ..     191     265 ..     190     277 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 4e-09
                 SEEEEE-STHHHHHHHHHHHHHHTT--EEEEEES--BS--HHHHHHHSTT-SEEEEEE-S--TT-G-HHHHHHHH CS
     PFOR_II   2 evvivamGsvagtaksavdelReegikvGllrlrtlrPFPeeelkellkkvkkvvvldrnisfgseGqlveevka 76 
                 +v++va+Gs++ ++ +a+++l + gi++ ++ + ++rP  +++l  +l+ + +v++++  +  g  G lv ev a
  CTQ26986.1 191 DVALVATGSTVHEVVEAAQQLADLGIQAKVVSVPSIRPCDTAALLAALRPCGSVITVEEHNVNGGLGSLVAEVLA 265
                 899*******************************************************99989999*****9966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2442.63
//
Query:       CTQ26987.1  [L=207]
Description: phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-17   61.2   0.8    1.2e-16   60.6   0.8    1.3  1  4PPT_N    4'-phosphopantetheinyl transferase N-terminal domai
    1.8e-11   44.1   0.0    2.6e-11   43.7   0.0    1.2  1  ACPS      4'-phosphopantetheinyl transferase superfamily


Domain annotation for each model (and alignments):
>> 4PPT_N  4'-phosphopantetheinyl transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.8   1.3e-20   1.2e-16      11      68 .]      44     100 ..      36     100 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 1.3e-20
      4PPT_N  11 akRkaeFlaGRicAraalarlgleavpllsgerraPlwpaglvgSIsHtdglaaAava 68 
                  kR+ae+laGRi+A  al+++g ++ p   g++r+Plwp+ ++gSIsH+ + a+A++a
  CTQ26987.1  44 RKRQAEHLAGRIAAAYALREVGEKRLPAI-GDQRQPLWPTPWFGSISHCGQRALAVIA 100
                 7*************************999.**************************96 PP

>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   2.9e-15   2.6e-11       1     114 []     103     205 ..     103     205 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 2.9e-15
                 EEEEEEEEHHHHH.HHH-----HHHHHS-HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTS-SSSS--GGG-EEEE-TTS-EEEE-S-SSEEEEEE CS
        ACPS   1 gvGiDieklsrlrkrvkrrgakilkrifteeErkllkssdeearaelfarlWaaKEAllKalgpglrklldfksievledstgrptlellseakkkawk 99 
                 +vG+Die  +r++ +    +a++  +i++++E+ +l +s  +++  ++++ ++aKE+ +Ka  + ++  ++f+++ +   ++g+ +l+l   +++ +w 
  CTQ26987.1 103 PVGVDIE--RRFTPQ---LAAELESSIISPAEKTALLRSGLPFP-LALTLAFSAKESGFKACDTDVQAGVGFNDFTLAAIKEGNLRLRLSTVEYRLQWI 195
                 59*****..777755...899999*******************9.9******************************************99999999997 PP

                 EE-....SSEEEEEE CS
        ACPS 100 leslkidkdyviavv 114
                        ++y+i+++
  CTQ26987.1 196 QA-----GEYIITLC 205
                 65.....88888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1665.20
//
Query:       CTQ26988.1  [L=742]
Description: iron-enterobactin outer membrane transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-53  182.4  41.3    2.9e-53  182.4  41.3    1.7  2  TonB_dep_Rec  TonB dependent receptor
    3.3e-29  101.6   0.8    3.3e-29  101.6   0.8    2.1  2  Plug          TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.6      0.17   1.5e+03     106     132 ..     196     225 ..      78     280 .. 0.47
   2 !  182.4  41.3   3.2e-57   2.9e-53      29     468 ..     282     739 ..     255     741 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.17
                   E.....CEEEEEEEEEEEEEEEEEEEEE.EEEE CS
  TonB_dep_Rec 106 n.....dyyglgnvlaaeldlngdlwfG.snla 132
                   +     ++++l++ l++++  +++l fG    +
    CTQ26988.1 196 EgstkrTNFSLSGPLGGDF--SFRL-FGnLDKT 225
                   0112111122222222222..2222.3332222 PP

  == domain 2  score: 182.4 bits;  conditional E-value: 3.2e-57
                   TEEEEEEE..EEEEEEEEEECCCEECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEECEEE........EEEE CS
  TonB_dep_Rec  29 dlgsalsr..gylgtnplyygdnysetdnkrlrlgydydlddnlswklslraglnYsstdgdsdynns.glgggrsynrdndyyg........lgnv 114
                   ++g+ +++  +++++n+     ny++ +n+ +r +y  +++    w+++++ + n+++++++ +++ + gl+gg+    ++++++        l+++
    CTQ26988.1 282 RQGNLYAGdtQNTNSND-LVKENYGKETNRLYRNTYSITWNGA--WDNGVT-TSNWAQYERTRNSRKGeGLAGGTEGIFNSNQFSdidlsdvmLHSE 374
                   33333444323333333.5555577777999999999999888..977777.777886666666666658888666666666666677767787777 PP

                   EEEEEEE..EEEEEEEEEEEEEEEEEE..EEEEECCBEESCCTC.......CSEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEETTCSSSS.. CS
  TonB_dep_Rec 115 laaeldl..ngdlwfGsnladgldyrk..lsddgydaydplnps.......gdasdsvdrdsyglyaqdnikltdrltltlGlRydhysvfgkdlra 200
                    + ++d+  n +l++G      +++++  ++d +++++  l ++       + +s++++++ ++l+a++n+ ltd   lt++lR+dh+s        
    CTQ26988.1 375 VSIPFDYlvNQNLTLG------SEWNQqrMKD-NASNTQALSGGeipgydsTGRSPYSQAEIFSLFAENNMELTDTTMLTPALRFDHHSIV------ 458
                   7777777777776799......****745555.33333333333466566658888888888899**************************...... PP

                   .EEECCCEEEEEEEEEE...EECETTEEEEEEEEEEEE-STTCTTCEEEE.........CCCCCEEEECSTT---EEEEEEEEEEEEEETTEEEEEE CS
  TonB_dep_Rec 201 gafsrsgsafsPsvglr...yrptddlslrasysrgfraPslgelyaggs.........ngaggalsngnpdLkPEtsknyelGlkldddrlnltla 285
                         g+++sPs++l+   +   dd++l+ + +r+++aPsl+++++++           ++ g + +gn+dLk+Ets n e+Gl++  d + + ++
    CTQ26988.1 459 ------GNNWSPSLNLSqglW---DDFTLKMGIARAYKAPSLYQTNPNYIlyskgqgcyASKDGCYLQGNDDLKAETSINKEIGLEFKRDGWLAGVT 546
                   ......7999*******6667...***********************999*99988887777999999******************9998888**** PP

                   EEEEEEEEEEEEESSSSCSTTTCS..EEEEEEEEEEEEEEEEEEEEE..EETTEEEEEEEEEEEE.EEECECEEECTTTTSSTTEESEEEEEEEEE. CS
  TonB_dep_Rec 286 yFridiknfittdpdgpslgglgd..fqyqNvgkarikGvElelsyr..ltpgWglglsgggytY.ydagddsdaddggnplpnvPkhtanlgltY. 376
                   +Fr+d++n i +++++   ++ g+  +q+ Nv+ka + G+E +l+     t +W+     ++ tY ++++++     +g++l+ +P++t+n +l++ 
    CTQ26988.1 547 WFRNDYRNKIEAGYAPVYQNNKGTdlYQWENVPKAVVEGLEGTLNVPvsETVNWT-----NNITYmLQSKNK----KTGDRLSIIPEYTLNSTLSWq 634
                   ******************999999******************9977777666699.....779997666666....99*************889973 PP

                   EC......SEEEEEEEESEEEE....EEECCSSEEEEECECCEE......EE--EEEEEEEEEEEESSSEEEEEEEESTTETCSCEEESTT...... CS
  TonB_dep_Rec 377 kf......paggWgaglllaga....rYvavggrrygdaantfr......rvpgYtlldlslgYklpknltlslgvnNLfdkryyassgyy...... 451
                    +       + +W       g      Y+++g+                 +v +Y +l ls++++++k ++l++gv+N+fdkr+++ ++        
    CTQ26988.1 635 VRddvslqSTFTWY------GKqepkKYNYKGQ--P-------VtgseknEVSPYSILGLSATWDVTKYVSLTGGVDNVFDKRHWRAGNAQttggat 716
                   11233322222233......1122334444455..2.......1334445999****************************5533333333456666 PP

                   ......TTTCCEB--SEEEEEEE CS
  TonB_dep_Rec 452 ......glggypgpgRtfrlglr 468
                         g  +y++ gRt++l+++
    CTQ26988.1 717 gtmygaGAETYNESGRTWYLSVN 739
                   666799999999*********98 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.8   3.7e-33   3.3e-29       8     108 .]      54     168 ..      48     168 .. 0.96
   2 ?   -3.7   0.0       1.9   1.7e+04      21      41 ..     401     420 ..     394     430 .. 0.56

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 3.7e-33
                 EEEEEEHHHHHHT.TTSSHHHHHTTSTTEEE...ECCCCSTTSEEEEETTB-GGCSEEEETTEEESC..........CCCSCTCGCSSBGGGEEEEEEE CS
        Plug   8 svsvvtaediekq.gatsladalqgvpgvnv...sssgggggassisiRGlgsnrvlvlvDGvpian..........ggsgagdlssidpedierievl 92 
                  vs++ta++i+k+ +a++++++++++pgvn    s+sg++g++ +i iRG+g++++l+l+DG p+++           +++ gd+s+++pe+ieriev+
  CTQ26988.1  54 GVSTITADEIRKRpPARDVSEIIRTMPGVNLtgnSTSGQRGNNRQIDIRGMGPENTLILIDGKPVTSrnsvrlgwrgERDTRGDTSWVPPEMIERIEVI 152
                 599**********77******************9999999999********************************99999999**************** PP

                 ESSCHCTTSSTGSSEE CS
        Plug  93 kGpasalyGsdaigGv 108
                 +Gpa+a+yG++a+gGv
  CTQ26988.1 153 RGPAAARYGNGAAGGV 168
                 ***************8 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.9
                 TTSSHHHHHTT.STTEEEECCC CS
        Plug  21 gatsladalqg.vpgvnvsssg 41 
                 +a++++ +  g +pg ++  +g
  CTQ26988.1 401 NASNTQALSGGeIPGYDS--TG 420
                 366666666668888874..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 5693.39
//
Query:       CTQ26989.1  [L=402]
Description: enterobactin/ferric enterobactin esterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-43  148.4   2.1    1.5e-43  148.4   2.1    1.9  2  DUF3327       Domain of unknown function (DUF3327)
    2.1e-38  132.4   0.0    2.9e-38  132.0   0.0    1.2  1  Esterase      Putative esterase
    2.4e-05   23.9   0.1    4.2e-05   23.1   0.1    1.3  1  Peptidase_S9  Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> DUF3327  Domain of unknown function (DUF3327)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4   2.1   2.4e-47   1.5e-43       1     122 []      26     157 ..      26     157 .. 0.96
   2 ?   -1.6   0.1      0.72   4.3e+03       6      25 ..     172     189 ..     171     215 .. 0.66

  Alignments for each domain:
  == domain 1  score: 148.4 bits;  conditional E-value: 2.4e-47
     DUF3327   1 lVtFlWRdpag..aesavrrVlldingvtdhhsae.pqslerlpgtDvWalslrlradwrgsYrliP........qraeadedlaraaareawrallat 88 
                 +VtF+WRdpag  + s+ rrV+l+i+gvtdhh+++ pqsl+rlpgtD W+++++l+ +wrgsY++iP        ++ ++++ ++ra  re wr+ll++
  CTQ26989.1  26 EVTFWWRDPAGdeTCSPHRRVWLYITGVTDHHQNArPQSLQRLPGTDAWFWRTTLSPTWRGSYCFIPsdrdddfsPEVFSADAPDRALLREGWRKLLPR 124
                 69*********98889*****************999**********************************999998999999***************** PP

     DUF3327  89 aqaDplnpesllrsrrgaaaSvlelpdApaqpaw 122
                 a+aDplnp+s+l +r g+++S+le+p+Apaqp+w
  CTQ26989.1 125 AIADPLNPHSWLGGR-GHGVSALEMPQAPAQPGW 157
                 **********77776.****************99 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.72
     DUF3327   6 WRdpagaesavrrVllding 25 
                 WR    +  + rrV+++ +g
  CTQ26989.1 172 WRSA--RLGNHRRVWIYTTG 189
                 7843..67899999999876 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.0   4.8e-42   2.9e-38       1     250 [.     174     393 ..     174     394 .. 0.93

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 4.8e-42
                 ETTTTEEEEEEEEE.CC.GGTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCHCHHHH CS
    Esterase   1 SealgreikvqvyLPedyspgrkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlgarfyenategpgaeayetflt 99 
                 S++lg  ++v++y++ +  + ++ p+ +lldG + w +++++++ l +l+reg+++++++  +++++++             +++ e p+ ++++ +++
  CTQ26989.1 174 SARLGNHRRVWIYTTGEAVDPQTRPLAILLDG-QFWAESMPVWSPLAALTREGRLPPAVYLLIDAIDNQ-------------RRGVELPCHRDFWLAVQ 258
                 899**********9999888999*********.************************************.............8999************* PP

                 THHHHHHHHHCSEECCC..EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CCHCHHHCTTCCHHHCC-CCCCHCHHCHTTSEEEEEEEECTTBCC CS
    Esterase 100 qeLlplldanfrtapdg..ravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgqeekeawqendpvllakelsaslkalriyldvGtsedd 196
                 +eLlpl+ +  +++++   ++vaGqS+GGl+A+ +al++p+rFg+v+s+S       ++W+++ +++  ++    +  + + s  +lr++l++G++e+ 
  CTQ26989.1 259 EELLPLVHGYAPFSDRPdrTVVAGQSFGGLAAMFAALNWPQRFGCVLSQS------GSYWWPHRDGR-GTGFIGEQLRQGEVSAAGLRVWLEAGQREP- 349
                 ********99999988888*******************************......88****88886.45555556666788999*************. PP

                 CHTSCHHHHHHHHHHHCCHHHHCCCCCCTT-SCCCC--SSHHHHHHHHHHCHHH CS
    Esterase 197 lgeqlsveilevlarnrelkeqlaargvegedheydGghsweyWraqLiaalad 250
                            +++ n++l +ql++  ++ +++++dGgh+  +Wr  L+a+l++
  CTQ26989.1 350 ----------IIFRANQALLAQLTTTQQTIFWRQVDGGHDALCWRGGLTAGLIQ 393
                 ..........88999999999*****************************9987 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   7.1e-09   4.2e-05      63     106 ..     275     318 ..     271     336 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 7.1e-09
                   GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHC CS
  Peptidase_S9  63 serlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlryds 106
                   ++r ++ G S+GG+ ++ a+ + p++F++++++ + + + + d 
    CTQ26989.1 275 PDRTVVAGQSFGGLAAMFAALNWPQRFGCVLSQSGSYWWPHRDG 318
                   799**************99999*************998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2850.40
//
Query:       CTQ26990.1  [L=67]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-23   80.1   1.1    6.7e-23   79.9   1.1    1.1  1  MbtH      MbtH-like protein


Domain annotation for each model (and alignments):
>> MbtH  MbtH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   1.1   3.8e-27   6.7e-23       2      51 ..       4      53 ..       3      55 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 3.8e-27
                -SCGG-SSSEEEEEEETT--EEEEETTS---TTEEEEEEEEEHHHHHHHH CS
        MbtH  2 snpfddedgtflVLvNdeeqySlWPafaavPaGWrvvggpgsreeClayi 51
                snpfd+++g+f++L Nd++qySlWPa++++PaGW+vv+ p+s e+C a+ 
  CTQ26990.1  4 SNPFDNPQGQFYILRNDQQQYSLWPAHCDLPAGWTVVCPPQSAEACNAWL 53
                8***********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 515.82
//
Query:       CTQ26991.1  [L=1300]
Description: enterobactin synthase multienzyme complex component, ATP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-98  330.0   0.0    2.4e-98  329.5   0.0    1.2  1  AMP-binding    AMP-binding enzyme
    6.1e-87  292.2   0.0    7.7e-87  291.9   0.0    1.1  1  Condensation   Condensation domain
    5.7e-51  173.8   0.2    8.1e-47  160.3   0.1    2.8  2  Thioesterase   Thioesterase domain
    8.8e-12   45.2   0.2    3.5e-11   43.3   0.2    2.1  1  PP-binding     Phosphopantetheine attachment site
    1.8e-06   28.8   0.0    7.2e-06   26.9   0.0    2.1  2  AMP-binding_C  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
      0.022   14.4   0.0      0.056   13.1   0.0    1.6  1  Abhydrolase_1  alpha/beta hydrolase fold
      0.035   14.0   0.3       0.12   12.3   0.0    2.0  2  Abhydrolase_3  alpha/beta hydrolase fold
      0.083   12.1   0.0       0.23   10.7   0.0    1.7  1  Hydrolase_4    Serine aminopeptidase, S33
      0.083   12.7   0.0        0.2   11.5   0.0    1.6  1  Lipase_3       Lipase (class 3)


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.5   0.0  1.2e-101   2.4e-98       2     423 .]     469     869 ..     468     869 .. 0.87

  Alignments for each domain:
  == domain 1  score: 329.5 bits;  conditional E-value: 1.2e-101
                  HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE CS
  AMP-binding   2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli 99 
                  ++qa+ktpd++al d     +++Yre++++v +lA+ Lr++Gvk+gd Va++lp+s+ +++al++i++aGa+  pl+++++ ++l+++led+++++li
   CTQ26991.1 469 ADQARKTPDAPALAD--ARWQFSYREMRQQVVALAQLLRQRGVKPGDSVAVALPRSVFLTLALHGIVEAGAAWLPLDTGYPDDRLRMMLEDARPSLLI 564
                  689**********88..6667******************99********************************************************* PP

                  ETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCS CS
  AMP-binding 100 atvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrf 197
                      +++l++  ++ +      + ++++       ++l + +  +  a  p   +  kpd++ayii+TSG+TG+PKGVm+ + ++v+ + ++  ++r 
   CTQ26991.1 565 --ATEDQLARFSDIPGL-----ESLCYQ-------QPLAAGD--D--A--P--LALSKPDHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWM--QDRY 638
                  ..334444555444442.....244444.......2222222..1..1..2..33579******************************9996..6777 PP

                  CCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-E CS
  AMP-binding 198 klkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggepl 295
                   l++ddvv +  p+++++++ +e ++++++Ga++v+++++a++dp+++ +++++++vt+++ vP++l a+++s + +   +   +  lr v++ ge+l
   CTQ26991.1 639 PLSADDVVAQKTPCSFDVSV-WEFWWPFIAGAQLVMAEPEAHRDPQAMQQFFARYGVTTTHFVPSMLAAFVASLDAD---SVAACRTLRRVFCSGEAL 732
                  7889***************8.*************************************************9964444...2336778*********** PP

                  BHHHHHHHHHHHTCEEEEEEEEGGGSSECEE.......CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHH CS
  AMP-binding 296 spellrffralfgeevlegYGlTEttgvvtv.......lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeata 386
                  + el r++++l+g +++++YG+TE+++ v++       l      ++++ +G+p++++ ++i+D + ++pvp+g+ G l++ g ++++gYl++p++ta
   CTQ26991.1 733 PTELCREWERLTGAPLHNLYGPTEAAVDVSWypacgpeLA-AVTGSSVP-IGWPVWNTGLRILDAA-MRPVPPGVAGDLYLTGIQLAQGYLGRPDLTA 827
                  *****************************77788886522.23333454.9**************9.******************************* PP

                  HHEEE....T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 387 eafds....e.grwlrTGDlgrldedGyleivgRkkdliklr 423
                  ++f++    + +r++rTGD++r+ ++G +e++gR++d++k+r
   CTQ26991.1 828 SRFIAdpfaPgERMYRTGDVARWLTNGAVEYLGRSDDQLKIR 869
                  ****778985467***********9***************86 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.9   0.0   3.8e-90   7.7e-87       3     456 ..      10     449 ..       8     450 .. 0.95

  Alignments for each domain:
  == domain 1  score: 291.9 bits;  conditional E-value: 3.8e-90
                   EEEEXXCCHHHHHHHHHHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----.EEEE-T..TSSSHHHH CS
  Condensation   3 deyplspaQkrmwflekleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerevel.evleisdleeseeeea 98 
                   + +pl+ aQ ++w++e l++ + a+ ++++++l+g+ld+++l ka+ + +++ d+L ++f+ ee+ge++Q++  +r++    +++++  ++ + ++a
    CTQ26991.1  10 TRLPLVAAQPGIWMAERLSTLPGAWSVAHYVELRGALDPTLLGKAIVAGLQQADTLSLRFE-EEEGEVWQWLAADRTFAEpSIIDLR--TAPDPHRA 103
                   5689********************************************************6.55*********77777555******..99999*** PP

                   HHHHHHHHHTC--SCCCS.-SEEEEEEESSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHH CS
  Condensation  99 ieefaqkdlqepfdLekg.pLfraalfkiaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdleke 194
                   + e +q+dl+++++++ g pL+ ++l+++ ++r+++++++HH++vDG+S++ ++r++a++Y ++++ge +p++++tp+++ ++++q+y++s++++++
    CTQ26991.1 104 ATERMQADLAQDLRVDGGnPLVCHQLLRVGDDRWYWYQRYHHLLVDGFSFPAITRQIAAIYRAWQRGEATPESPFTPFAEVVDEYQRYAGSEAWQRD 200
                   ************************************************************************************************* PP

                   HHHHHHHHH......S---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTTCSTCHHC- CS
  Condensation 195 eaYWseqlegelpvlqLpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgReseikdierm 291
                   +a+W+ q +   + ++L +   ++  r +  d  ++kl+ +  +  r +  + + +  d+ la+ +l+L ++++++d++ g+++++R  +  +  + 
    CTQ26991.1 201 KAFWQAQRQALPAPASLSAA--PLGGRAAGSDIWRMKLEMNADAFRRLASHAPQCQPADLALALTTLWLGRLCNRMDYAAGFIFMRRMGS--AALTS 293
                   *********95555556655..889999999999****99999999999999**************************************..9**** PP

                   -SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HH....CCCEEECCCCSEEECEE... CS
  Condensation 292 vGlFvntlPlridvkeaktfselikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgq....eseeeesqlselklsvssve 384
                   +G  +n+lPl +++++++t+++l  r+ ++l+k+++hq+y+ e++v+d+   ++++++pLf+pv++ +++++q     +++ +++l++++++     
    CTQ26991.1 294 TGPVLNVLPLAVHIDAQETLADLAMRLAAQLKKMRRHQRYDAEQIVRDSG--KAAGDEPLFGPVLNVKVFDYQldidGVQAVTHTLATGPVN----- 383
                   **************************************************..55589****************9998889999999999999..... PP

                   E.....SSEEEEEEE.TTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----HHHHHHH CS
  Condensation 385 aeeeskydlslease.tngkltikieYntslFdeetierflerlkelleqviehpeqklselkllsdaekekL 456
                          dl+l +++ ++g+l+++i  n++++de++++r++ rl+ ll q++++p+ ++ e ++ls +e + L
    CTQ26991.1 384 -------DLELALFPdETGGLSLEILANKARYDEAELRRHMARLTALLAQFAADPTLRCGEAEMLSADELARL 449
                   .......********99*************************************************9987665 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00023      0.46      39      94 ..     972    1030 ..     956    1040 .. 0.79
   2 !  160.3   0.1   4.1e-50   8.1e-47       2     222 ..    1075    1290 ..    1074    1295 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
                    T.SHHHCTTCHHHHHHHHHHHHHHH-....SSSSEEEEEETHHHHHHHHHHHHHHHC.T-SE CS
  Thioesterase   39 e.rdepplesieelaaeyaealrqiq....pegPyalfGhSlGgllAfevArqLesq.Glav 94  
                    e ++ pp +++e+l+a  + +l+ +     + + +al+GhSl   lA+++A+qL +q +++v
    CTQ26991.1  972 ErSGRPPEPGMETLVAAAFSQLLGCEvndiDADFFALGGHSL---LAMRLAAQLSRQlARQV 1030
                    347789999***********999875222255679******6...99999999999976665 PP

  == domain 2  score: 160.3 bits;  conditional E-value: 4.1e-50
                    EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTSTSHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEE CS
  Thioesterase    2 pLflfppagGsasvfrslasklsdpvvevlavqlpgrerdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavks 96  
                    +Lf+f+pa G a++f+ la++ls++ +++ ++q p+ + +++ + s++e+++ ++ +l+++qp+gPy+lfG+SlGg+lA+ +A++L+++G+av++
    CTQ26991.1 1075 TLFCFHPASGFAWQFSVLARYLSPR-WSITGIQSPRPQGPMASAASLDEVCEHHLRTLLAQQPHGPYYLFGYSLGGTLAQGIAARLRQRGEAVAF 1168
                    8***********************9.********************************************************************* PP

                    EEEESCCCCCCHHCHHCCCHTTHHTHHHHHCCTTHH..HCCTTTHCCHHHHHHHHHHHHHHHHHTCCS-TTSCSEHHCEEEEEEGSS-CTCCCCC CS
  Thioesterase   97 lflidssapseteaqeasrraedeefveeltdlggt..epeelledeellsellpalradyraleqyslrpeaaqklratlfngsddklkdldtl 189 
                    l+l d+++p+++++ e++ +  d e+++e+++++++  ++++  ++ el+s ++ ++++++r+l+++++ +++ +   atlf+ ++++++++d  
    CTQ26991.1 1169 LGLLDTWPPETQNWAEKEANGLDPEVLAEIDREREAflAAQQGQASGELFSAIEGNYADAVRLLTTAHSAKFDGK---ATLFVAEKTRQEGMD-- 1258
                    *************************************99************************************...***************.. PP

                    CCHCHCHCTCESCEEEEEESSHCCHHHS.HHHHH CS
  Thioesterase  190 elaerweqktsgevsvhvlegdhfylle.drlea 222 
                      +   +  + ge  v  + + h+++++ ++ ea
    CTQ26991.1 1259 -PQV-VWGPWVGELEVFSQNCAHVDIISpQAFEA 1290
                    .566.999*******************9554444 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.2   1.7e-14   3.5e-11       3      67 .]     986    1048 ..     984    1048 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 1.7e-14
  PP-binding    3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  + ++++++lg+++ +   d+d+f lG++Slla++l+a+l++++  ++++ +++  +t++ l+a+l
  CTQ26991.1  986 VAAAFSQLLGCEVND--IDADFFALGGHSLLAMRLAAQLSRQLARQVTPGQVMVASTVGKLSALL 1048
                  77899*******999..79******************************************9976 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   3.6e-09   7.2e-06       2      76 .]     878     958 ..     877     958 .. 0.80
   2 ?   -3.9   0.0         9   1.8e+04      46      66 ..    1018    1038 ..    1010    1052 .. 0.69

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.6e-09
                    HHHHHHSSTTEEEEE....EE-----TTS..---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   2 vEsalvshpaVaeaa....VvGvpdevkG..ealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    +  + ++ p+Va+a+    V+    ++ G  + lv++ v ++g ++  ++Lka+++++l+p++vp  +  ++elp+ ++GK
     CTQ26991.1 878 IDRVMSALPDVAQAVshacVFNQAAATGGdaRQLVGYLVSDSGLPLDTAALKARLAEQLPPHMVPVVLMQLAELPLSANGK 958
                    555666666666655444499777777778888******977744457*********************9**********9 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 9
                     HHHHHHHHT-TTTS-SEEEE- CS
  AMP-binding_C   46 Lkahvrkelgpyavpkkvvfv 66  
                     L a++ ++l+   +p +v + 
     CTQ26991.1 1018 LAAQLSRQLARQVTPGQVMVA 1038
                     666666777776676666554 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.8e-05     0.056      57     123 ..    1121    1189 ..    1090    1214 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.8e-05
                     HHHHHHHH.HHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE.CSSCCHHHHHHHHHHHH CS
  Abhydrolase_1   57 asvaddld.rildalgddkltlvGhSmGGmialayaaeyperVkalvllga.idpaaslieaqrqqaks 123 
                     + v++     +l++ + ++ +l G+S+GG++a   aa+  +r  a+++lg   ++++++  +++  a++
     CTQ26991.1 1121 DEVCEHHLrTLLAQQPHGPYYLFGYSLGGTLAQGIAARLRQRGEAVAFLGLlDTWPPETQNWAEKEANG 1189
                     55555555377999999999*******************999999999999877888888888776655 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.3   6.6e+03     164     194 ..     298     328 ..     284     334 .. 0.79
   2 ?   12.3   0.0   5.8e-05      0.12      69     126 ..    1136    1188 ..    1106    1257 .. 0.66

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.3
                    ST---EEEEEETT-TTHHHHHHHHHHHHHTT CS
  Abhydrolase_3 164 sglpptlvvvaefDplrdegeayaerlraag 194
                     ++ p  v +  +++l d + ++a++l+++ 
     CTQ26991.1 298 LNVLPLAVHIDAQETLADLAMRLAAQLKKMR 328
                    4567888999999999999999999999876 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5.8e-05
                     TTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE-SSTSSTTSHHHHHCHHT CS
  Abhydrolase_3   69 dpsrivlaGdSaGGnlaaavalrardegepkvagqvliyPvtdlertesesikkaeel 126 
                          +l+G S GG+la  +a r+r++g  +va++ l+  +  + +t++ ++k  e++
     CTQ26991.1 1136 PHGPYYLFGYSLGGTLAQGIAARLRQRG-EAVAFLGLLDTWP-P-ETQNWAEK--EAN 1188
                     345789********************95.6788888887764.2.33333332..223 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00012      0.23      65     105 ..    1127    1167 ..    1108    1192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
  Hydrolase_4   65 fvekvkeehpelplfllGhSmGGliallyllrypdkvagli 105 
                   +++++ +++p+ p +l+G S+GG++a+ +++r +++ +++ 
   CTQ26991.1 1127 HLRTLLAQQPHGPYYLFGYSLGGTLAQGIAARLRQRGEAVA 1167
                   56788899********************9987777555555 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0001       0.2      44      91 ..    1118    1164 ..    1101    1177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
                  HS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT- CS
    Lipase_3   44 eeslreqvlkelkrllekypeysivvtGHSLGgalAlLaaldlvenge 91  
                    sl e  ++ l++ll+++p    ++ G SLGg+lA  +a+ l+++ge
  CTQ26991.1 1118 A-SLDEVCEHHLRTLLAQQPHGPYYLFGYSLGGTLAQGIAARLRQRGE 1164
                  4.788889999******************************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.86u 0.25s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 9103.56
//
Query:       CTQ26992.1  [L=264]
Description: iron-enterobactin transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-33  115.8   0.0    2.7e-33  115.4   0.0    1.1  1  ABC_tran      ABC transporter
    2.9e-10   40.5   0.4    3.8e-06   26.9   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    2.9e-09   36.7   0.0    3.3e-07   30.0   0.0    2.1  1  SMC_N         RecF/RecN/SMC N terminal domain
    2.6e-06   27.9   0.2    1.1e-05   25.9   0.1    1.7  2  AAA_16        AAA ATPase domain
    3.2e-06   26.8   0.0    5.8e-06   25.9   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
      3e-05   23.9   0.0    0.00028   20.7   0.0    1.9  2  AAA_15        AAA ATPase domain
    0.00015   22.3   0.3    0.00017   22.2   0.3    1.3  1  AAA_23        AAA domain
    0.00022   21.5   0.2     0.0013   19.1   0.2    2.1  1  AAA_22        AAA domain
    0.00037   20.1   0.2     0.0011   18.5   0.1    1.9  2  AAA_25        AAA domain
     0.0014   17.5   0.1      0.062   12.1   0.0    2.3  2  ABC_ATPase    Predicted ATPase of the ABC class
     0.0015   18.5   0.0     0.0025   17.7   0.0    1.4  1  Rad17         Rad17 P-loop domain
     0.0018   17.7   0.0     0.0033   16.9   0.0    1.4  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
     0.0021   17.7   0.0     0.0037   16.9   0.0    1.3  1  AAA_27        AAA domain
     0.0022   18.3   0.0      0.006   16.8   0.0    1.6  1  AAA_28        AAA domain
     0.0023   17.7   0.0     0.0054   16.5   0.0    1.6  1  AAA_30        AAA domain
     0.0027   17.7   0.2      0.059   13.3   0.0    2.2  2  NACHT         NACHT domain
     0.0031   17.4   0.0     0.0054   16.6   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
     0.0069   16.4   0.1      0.053   13.5   0.0    2.3  2  AAA_5         AAA domain (dynein-related subfamily)
     0.0089   16.6   0.0      0.017   15.6   0.0    1.6  1  AAA_18        AAA domain
  ------ inclusion threshold ------
      0.012   16.1   0.0      0.017   15.6   0.0    1.2  1  NYN           NYN domain
      0.018   14.7   0.0      0.061   13.0   0.0    1.8  2  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-bind
       0.02   13.7   0.0      0.062   12.1   0.0    1.7  2  Adeno_IVa2    Adenovirus IVa2 protein
      0.024   13.9   0.0      0.043   13.1   0.0    1.4  1  Rad51         Rad51
      0.047   13.7   0.0       0.11   12.5   0.0    1.6  2  AAA_14        AAA domain
       0.05   13.7   0.1       0.13   12.4   0.1    1.8  1  MMR_HSR1      50S ribosome-binding GTPase
      0.072   13.5   0.0       0.15   12.5   0.0    1.6  1  AAA           ATPase family associated with various cellular 
      0.078   13.4   0.0       0.14   12.5   0.0    1.5  1  RNA_helicase  RNA helicase
       0.12   11.5   0.0       0.13   11.4   0.0    1.1  1  G-alpha       G-protein alpha subunit
       0.13   12.4   0.2       0.23   11.6   0.2    1.8  1  AAA_33        AAA domain
       0.13   11.5   0.0       0.23   10.7   0.0    1.4  1  Zeta_toxin    Zeta toxin
       0.16   11.9   0.0       0.26   11.1   0.0    1.3  1  ATPase_2      ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4   0.0   4.6e-36   2.7e-33       3     136 ..      25     171 ..      23     172 .. 0.96

  Alignments for each domain:
  == domain 1  score: 115.4 bits;  conditional E-value: 4.6e-36
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esdee 84 
                  +++++  g+ +ai+G+nG+GKStLl++l++l++p++G+++ldg+++++   +++ ++ig l q+++   ++tv+e                  e++e 
  CTQ26992.1  25 SLNVTIPDGQFTAIIGPNGCGKSTLLRTLSRLMTPASGHVWLDGAQIQQYASKEVARRIGLLAQNATTPGDITVQELvargryphqplftrwrkEDEEA 123
                 689****************************************************************************************98777777 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++ka++  g+++l+ + v     +LSgGq+qr  +a++l+++  ++llDEpt
  CTQ26992.1 124 VNKAMRATGISDLALQSV----DTLSGGQRQRAWIAMVLAQETAIMLLDEPT 171
                 999999999999999999....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   6.6e-09   3.8e-06       1      22 [.      35      56 ..      35      84 .. 0.90
   2 !   12.3   0.1   0.00019      0.11     227     287 ..     134     191 ..      71     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 6.6e-09
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                ++++iGpNg+GKS+LL++l+ l
  CTQ26992.1 35 FTAIIGPNGCGKSTLLRTLSRL 56
                89*****************998 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00019
      AAA_21 227 gdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr 287
                 +d    +++ lS G+++  a ++++l++    ++ l+DEp + L+ + +  llell+el+r
  CTQ26992.1 134 SDLALQSVDTLSGGQRQR-AWIAMVLAQET--AIMLLDEPTTWLDISHQIDLLELLSELNR 191
                 55566678889*******.*******9998..9***********************88877 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   5.7e-10   3.3e-07      19     188 ..      28     191 ..      14     211 .. 0.66

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 5.7e-10
                 EEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  19 ilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingke 117
                 ++  + +ftai+GpNG+GKs ll  ++ ++  +s  ++  + ++  i++    ++    ++ ++ +n      i+ +e++ + r  ++     +   ++
  CTQ26992.1  28 VTIPDGQFTAIIGPNGCGKSTLLRTLSRLMTPASG-HVWLDGAQ--IQQ--YASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPL---FTRWRK 118
                 4445678*******************999997666.54444333..343..122222234555555555554455555544444433333...233333 PP

                 E-HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCT CS
                 xxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 118 vtkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksk 188
                   ++ v++ ++ +gis        +LSgG+++ + +a+++A    + ++++llDe    LD ++   + ell e + 
  CTQ26992.1 119 EDEEAVNKAMRATGISDLalqsvdTLSGGQRQRAWIAMVLA----QETAIMLLDEPTTWLDISHQIDLLELLSELNR 191
                 3334444444444443322222229**************98....6789*******************999998765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   1.8e-08   1.1e-05      21     122 ..      30     155 ..      11     193 .. 0.66
   2 ?   -0.1   0.0       1.9   1.1e+03      43      86 ..     184     226 ..     181     240 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.8e-08
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqllde..................aesaeleawrek 100
                  ++++ + ++G+ G+GKs+l+r+l r ++ + g++ l g   q         +a+   + + +  l+++                  + + ++ +wr++
  CTQ26992.1  30 IPDGQFTAIIGPNGCGKSTLLRTLSRLMTPASGHVwLDGAQIQQ--------YASKEVA-RRIGLLAQNattpgditvqelvargryPHQPLFTRWRKE 119
                 45568899******************999997777666666666........3333322.333444433344666666667778888666699999999 PP

      AAA_16 101 leeala..............avpelagaeasrllel 122
                  eea++              +v+ l+g +++r + +
  CTQ26992.1 120 DEEAVNkamratgisdlalqSVDTLSGGQRQRAWIA 155
                 999888777777777666666666666666554444 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.9
      AAA_16  43 ellralekdggiflrgkcdqlesaipysalaqalareellrqll 86 
                 ell +l++++g++l++  ++l +a +y++ + al r++ + +++
  CTQ26992.1 184 ELLSELNREKGYTLAAVLHDLNQACRYATHLIAL-RDGRIVAEG 226
                 5667899999999999999998888887755555.455555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0     1e-08   5.8e-06      18      50 ..      29      61 ..      19      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1e-08
      AAA_29 18 eidlkg.atlltGpsGsGKSTllDAiqalLvpak 50
                +i  +g +t ++Gp+G GKSTll  ++ l++pa+
  CTQ26992.1 29 TIP-DGqFTAIIGPNGCGKSTLLRTLSRLMTPAS 61
                454.5669************************97 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.8e-07   0.00028      24      50 ..      34      60 ..      24      85 .. 0.76
   2 ?    0.8   0.0      0.54   3.1e+02     321     353 ..     159     191 ..      96     195 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.8e-07
      AAA_15 24 eltvliGkNnsGKSsilealdlFlnnk 50
                ++t +iG+N++GKS++l+ l  + +  
  CTQ26992.1 34 QFTAIIGPNGCGKSTLLRTLSRLMTPA 60
                39******************9888765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.54
      AAA_15 321 eeknvilliEEPEahLHpqaqkvlikllkelan 353
                  ++++i l++EP + L +++q  l +ll el +
  CTQ26992.1 159 AQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191
                 356799**********99999999999999855 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.3   2.9e-07   0.00017      18      40 ..      32      54 ..      16     193 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.9e-07
      AAA_23 18 skgltlItGpNGaGKTTildAik 40
                +  +t+I+GpNG+GK+T+l+ + 
  CTQ26992.1 32 DGQFTAIIGPNGCGKSTLLRTLS 54
                5679***************8775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   2.2e-06    0.0013       5      55 ..      33      95 ..      31     217 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.2e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee............erpevvfvtlpsstsskd 55
                 ++++++G+ G+GK+tllr+l +  + ++ + +            e ++ +   +++ t++ d
  CTQ26992.1 33 GQFTAIIGPNGCGKSTLLRTLSRLMTPASGHVWldgaqiqqyaskEVARRIGLLAQNATTPGD 95
                6899*****************988765555444666666666444444444555555555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1     2e-06    0.0011      30      66 ..      30      70 ..      24     146 .. 0.88
   2 ?   -1.0   0.0         2   1.1e+03      89     129 ..     196     235 ..     148     252 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2e-06
      AAA_25 30 lpagelallaGapgtGKttlaldlalava..tGkpwlg..p 66
                +p g +++++G+ g+GK+tl+  l+  ++  +G+ wl+  +
  CTQ26992.1 30 IPDGQFTAIIGPNGCGKSTLLRTLSRLMTpaSGHVWLDgaQ 70
                899***********************999999*99998441 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2
      AAA_25  89 Rlravgealrddarllvldlagv.eslpLfakdrggtlltad 129
                  l+av+++l++  r + + +     + +++a+++  +++tad
  CTQ26992.1 196 TLAAVLHDLNQACRYATHLI--AlRDGRIVAEGAPKEIVTAD 235
                 45555555533333322222..22356666666666666666 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00011     0.062     240     266 ..      28      55 ..       3      69 .. 0.79
   2 ?    3.4   0.0     0.047        27     320     351 ..     141     172 ..     130     216 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
                 EEE-SS.EEEEEE-TTSSHHHHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAlek 266
                 + ip G  t+I+G++  GKsTLL+ l++
  CTQ26992.1  28 VTIPDGqFTAIIGPNGCGKSTLLRTLSR 55 
                 689***9*****************9975 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.047
                 ESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS CS
  ABC_ATPase 320 tedASGStsqAanimealeagakllLiDEDts 351
                  ++ SG   q a+i+  l  ++ ++L+DE t+
  CTQ26992.1 141 VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTT 172
                 56779************************886 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.4e-06    0.0025      47      85 ..      35      74 ..      20      99 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.4e-06
       Rad17 47 iLLisGPsGCgkstvvkvLskelgikl.rewlnpvslkep 85
                   i GP GCgkst ++ Ls+ +++   + wl++ ++++ 
  CTQ26992.1 35 FTAIIGPNGCGKSTLLRTLSRLMTPASgHVWLDGAQIQQY 74
                55699****************9887541668888777665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.6e-06    0.0033       7      67 ..      18      78 ..      12     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.6e-06
  Mg_chelatase  7 GqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkk 67
                  G+++  + l++++  g    ++Gp G+GK+ l + l+ l++p s +  l+ a+i+  a+k+
    CTQ26992.1 18 GNKTIAESLNVTIPDGQFTAIIGPNGCGKSTLLRTLSRLMTPASGHVWLDGAQIQQYASKE 78
                  777888889999988888899****************************999999887755 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.4e-06    0.0037      10      50 ..      16      57 ..       8      59 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.4e-06
      AAA_27 10 ryGkft.drsldfsaeeadlhliyGpNEAGKstalrAisdll 50
                +yG+ t  +sl+    + +++ i+GpN  GKst+lr +s+l+
  CTQ26992.1 16 AYGNKTiAESLNVTIPDGQFTAIIGPNGCGKSTLLRTLSRLM 57
                577665356899999999********************9986 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     1e-05     0.006       3      27 ..      37      66 ..      35      91 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1e-05
      AAA_28  3 vitGgestGKTtlleaLaar.....gypvv 27
                +i+G+ ++GK+tll+ L++      g++++
  CTQ26992.1 37 AIIGPNGCGKSTLLRTLSRLmtpasGHVWL 66
                79****************653444466665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   9.4e-06    0.0054      18      72 ..      33      89 ..      23     119 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.4e-06
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrvi..glAptgkaAkvLaeelgieast 72
                 +++++ Gp G GK+t+l++l ++++ a g+v   g+  ++ a+k++a+ +g+ a++
  CTQ26992.1 33 GQFTAIIGPNGCGKSTLLRTLSRLMTPASGHVWldGAQIQQYASKEVARRIGLLAQN 89
                35899*******************999966666446666777777788888875544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0    0.0001     0.059       3      23 ..      36      56 ..      34      63 .. 0.87
   2 ?    2.5   0.0      0.21   1.2e+02      52     116 ..     131     193 ..      97     234 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.0001
                EEEEC-TTTCHHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklala 23
                 ++ G++G+GK+tLl+ l ++
  CTQ26992.1 36 TAIIGPNGCGKSTLLRTLSRL 56
                5799************99875 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.21
                 .-HCHHHCCCCTS--SSS-C.CHHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTT CS
       NACHT  52 rsladllfsqlpepaapvse.vwavllelperlLlilDglDelvtdlgqkekqpvrtlLselirkk 116
                 +++ dl  +  + +++ +++  w+ ++  +e + ++lD      ++ +q     + +lLsel r+k
  CTQ26992.1 131 TGISDLALQSVDTLSGGQRQrAWIAMVLAQETAIMLLDEPTTWLDISHQ---IDLLELLSELNREK 193
                 6666666666666555555556777777777777777765555555555...55555555554443 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   9.4e-06    0.0054      85     121 ..      18      55 ..       6      73 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.4e-06
                  TTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  85 ktkegleelkellkd.ktsvlvGqSGvGKStLinallp 121
                   +k+ +e+l+  + d ++++++G+ G GKStL+ +l  
   CTQ26992.1  18 GNKTIAESLNVTIPDgQFTAIIGPNGCGKSTLLRTLSR 55 
                  5566778888888887******************9976 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   9.2e-05     0.053       4      24 ..      38      59 ..      36      82 .. 0.88
   2 ?    0.7   0.0      0.84   4.8e+02      62      91 ..     158     188 ..      97     240 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.2e-05
                EE--SSSSHHHHHHHGGGGB.S CS
       AAA_5  4 LvGppGtgKselaerlaaal.n 24
                ++Gp G+gKs+l + l++++  
  CTQ26992.1 38 IIGPNGCGKSTLLRTLSRLMtP 59
                79****************9953 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.84
                 ---G-SEEEEESGGG--.HHHHHHHHHHHHS CS
       AAA_5  62 aaregeilvlDEverae.sevlnsLlsllee 91 
                  a+e +i++lDE ++    + +  Ll ll+e
  CTQ26992.1 158 LAQETAIMLLDEPTTWLdISHQIDLLELLSE 188
                 3456666666664443333334444444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     3e-05     0.017       3      34 ..      38      77 ..      37     130 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3e-05
      AAA_18  3 ltGtpGvGKttlakeLskrlgf.........gvnlrdvake 34
                + G+ G+GK+tl + Ls+++           g +++++a++
  CTQ26992.1 38 IIGPNGCGKSTLLRTLSRLM-TpasghvwldGAQIQQYASK 77
                89****************97.13477778886666666665 PP

>> NYN  NYN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.0     3e-05     0.017       4     139 ..      64     207 ..      63     218 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3e-05
         NYN   4 vfiDgenlpvpakgke.vdyrklleeirskgelvraraygn...........wedeeqnkfqdalsstgi.kvkhkplkkrg.gsgkkav.Dvelavda 87 
                 v+ Dg+ ++ +a+++    +  l++++++ g++++   ++            w +e+ +++++a+++tgi ++    + +++ g ++ a+  + la + 
  CTQ26992.1  64 VWLDGAQIQQYASKEVaRRIGLLAQNATTPGDITVQELVARgryphqplftrWRKEDEEAVNKAMRATGIsDLALQSVDTLSgGQRQRAWiAMVLAQET 162
                 8999999999888444779999999999988877777777777777888888999999******************99999974444444045555555 PP

         NYN  88 lelaydnkydtivLvsgDgDFaplveklr.ergkrVevllaeeastsseLisa 139
                   ++  +++ t   +s   D+  l+++l+ e+g++   +l +      +L +a
  CTQ26992.1 163 AIML-LDEPTTWLDISHQIDLLELLSELNrEKGYTLAAVL-H------DLNQA 207
                 5555.5669*************************444444.3......22222 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00011     0.061       9      37 ..      28      56 ..      23      97 .. 0.91
   2 ?   -1.0   0.0         2   1.2e+03     106     138 ..     162     196 ..     154     238 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00011
                 S-EBTT-EEEEEESTTSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  9 fpivqGqrtlipgafgvGktvisqslskq 37
                 ++i  Gq t+i+g +g+Gk++++++ls+ 
   CTQ26992.1 28 VTIPDGQFTAIIGPNGCGKSTLLRTLSRL 56
                 57889********************9986 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2
                  EEEEEEETHHHHHHHHHHHHH..HTTTSBEGGGSB CS
                  xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx RF
  ATP-synt_ab 106 nvlliadslsrwaeAlreisl..rlgempadqgyp 138
                   +++++d+ + w +   +i l  +l e   ++gy+
   CTQ26992.1 162 TAIMLLDEPTTWLDISHQIDLleLLSELNREKGYT 196
                  56777777777777777776522466777777775 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00011     0.062      90     117 ..      36      61 ..       9      80 .. 0.80
   2 ?   -1.4   0.0       1.3   7.6e+02     230     254 ..     189     213 ..     183     218 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
  Adeno_IVa2  90 GviyGPtGsGksqllrnlissklisPiP 117
                   i GP G+Gks llr+l  s+l+ P+ 
  CTQ26992.1  36 TAIIGPNGCGKSTLLRTL--SRLMTPAS 61 
                 5689************98..56777765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.3
  Adeno_IVa2 230 fkkctgfsvlvvlhnlnPrsdiagn 254
                  ++  g+++  vlh+ln     a  
  CTQ26992.1 189 LNREKGYTLAAVLHDLNQACRYATH 213
                 556679**********987766655 PP

>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.4e-05     0.043      13      58 ..       9      54 ..       2      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.4e-05
                HHSS-EE--S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHH CS
       Rad51 13 rsellqlttGskklDelLgGGietgsiteifGefrsGktqlchtlc 58
                r e l+l+ G+k++ e L+  i+ g+ t i+G +++Gk+ l  tl+
  CTQ26992.1  9 RGEQLTLAYGNKTIAESLNVTIPDGQFTAIIGPNGCGKSTLLRTLS 54
                66788999*********************************99996 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00019      0.11       3      40 ..      34      70 ..      32      95 .. 0.72
   2 ?   -2.6   0.0         9   5.2e+03      63      74 ..     160     171 ..     135     196 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00019
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesilyinldd 40
                +  +i G+  +GK+tll++l +    +++  + ++  +
  CTQ26992.1 34 QFTAIIGPNGCGKSTLLRTLSRLMT-PASGHVWLDGAQ 70
                5678*************99974433.555555555555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9
      AAA_14  63 ekktylflDEiq 74 
                 +++ +++lDE  
  CTQ26992.1 160 QETAIMLLDEPT 171
                 356667777754 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00022      0.13       3      21 ..      37      55 ..      35     167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00022
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                ai+G    GKStL+++l++
  CTQ26992.1 37 AIIGPNGCGKSTLLRTLSR 55
                8****************87 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00026      0.15       3      54 ..      38      91 ..      36     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00026
                EESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSSSTTHHHHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakelg..vefleisgsellskyvgesekkirelfkeak 54
                ++Gp G+GK++l + + + +   +  + ++g+++ +   +e +++i  l ++a 
  CTQ26992.1 38 IIGPNGCGKSTLLRTLSRLMTpaSGHVWLDGAQIQQYASKEVARRIGLLAQNAT 91
                68**************99985445568888888886666777777777777665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00024      0.14       3      23 ..      38      58 ..      36      81 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00024
  RNA_helicase  3 lyGpsgeGKStlakeLakall 23
                  + Gp+g+GKStl ++L++ ++
    CTQ26992.1 38 IIGPNGCGKSTLLRTLSRLMT 58
                  78*************887665 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00023      0.13      28      90 ..      38     122 ..      31     222 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00023
                 EEESTTSSHHHHHHHHHHHCS--....--HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT...........................H CS
     G-alpha  28 llGqseSGKsTilkqlkllykkg....fseeelatwraviqlnivrsiktilealesleselsesf....................e 90 
                 ++G +++GKsT+l+ l +l +++    + +   a+++++  + + r i ++ ++ +++++   +++                    e
  CTQ26992.1  38 IIGPNGCGKSTLLRTLSRLMTPAsghvWLD--GAQIQQYASKEVARRIGLLAQNATTPGDITVQELvargryphqplftrwrkedeE 122
                 6899*************9999996663332..3778889999999999999999988654444444455566666666666665543 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2    0.0004      0.23       4      21 ..      38      55 ..      36     223 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0004
      AAA_33  4 lvGlpGsGKstlaerllk 21
                ++G++G+GKstl++ l +
  CTQ26992.1 38 IIGPNGCGKSTLLRTLSR 55
                69***********99864 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00039      0.23      23      57 ..      40      74 ..      23      91 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00039
  Zeta_toxin 23 GqpGAGKselaellkdelerqgnvvrldpDdlRel 57
                G  G+GKs+l++ l + ++++++ v ld+ +++++
  CTQ26992.1 40 GPNGCGKSTLLRTLSRLMTPASGHVWLDGAQIQQY 74
                789**************************999988 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00046      0.26      22      40 ..      35      53 ..      26      93 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00046
    ATPase_2 22 iyfiYGpegsGKtaLlkei 40
                +  i Gp g+GK++Ll+ +
  CTQ26992.1 35 FTAIIGPNGCGKSTLLRTL 53
                56799***********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 1923.40
//
Query:       CTQ26993.1  [L=330]
Description: iron-enterobactin transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-84  283.5  36.8    2.1e-84  283.2  36.8    1.0  1  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.2  36.8   1.2e-88   2.1e-84       3     311 ..      20     324 ..      14     325 .. 0.98

  Alignments for each domain:
  == domain 1  score: 283.2 bits;  conditional E-value: 1.2e-88
       FecCD   3 llllllslllgavkispsevfeallgkadsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgslslf 101
                 ll+ ll l+ g+v++++ +vf+al+g+a ++ a++v e+rlprvl+all+GaaL+v+Ga++Q++trNpL +P+++G+++ga+ g+++a++l+  +++l 
  CTQ26993.1  20 LLISLLGLAQGPVPLTIDQVFSALFGDAPRNVAMVVNEWRLPRVLMALLIGAALGVSGAIFQSLTRNPLGSPDVMGFNTGAWSGVLVAMVLF--GQNLT 116
                 45678889***********************************************************************************5..89999 PP

       FecCD 102 alplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllarkl 200
                 a++laa+lg++l++l+v+lla +r+g+++++li++Gi v a+l a++++lll ++ e++ s+  w +Gsl+g +w k++ +++l+ll+l+ ++ll r++
  CTQ26993.1 117 AIALAAMLGGVLTSLVVWLLA-WRNGIETFRLIIIGIGVRAMLVAFNTWLLLRASLETALSAGLWNAGSLNGLTWGKTWPSAPLILLMLVSSALLVRRM 214
                 9********************.***************************************************************************** PP

       FecCD 201 dllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgivta 299
                 +ll++gd+tA +lGv+ver rlll+l++++lta+++al+Gpi+F++L++Phiar+l g + r+ l  sal+Galll+lad+ a+ l+ p +lpvg++t 
  CTQ26993.1 215 RLLEMGDDTACALGVQVERSRLLLMLVAVVLTAASTALAGPISFIALVAPHIARRLSG-TARWGLTQSALCGALLLALADYGAQRLFMPWQLPVGVLTV 312
                 **********************************************************.88************************************** PP

       FecCD 300 liGapffiylll 311
                  +G++++i+ll+
  CTQ26993.1 313 SLGGIYLIALLI 324
                 **********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2366.67
//
Query:       CTQ26994.1  [L=335]
Description: iron-enterobactin transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-90  302.4  32.4    3.8e-90  302.1  32.4    1.0  1  FecCD           FecCD transport family
  ------ inclusion threshold ------
        2.2    9.0   8.8        1.7    9.4   0.9    2.9  3  Multi_Drug_Res  Small Multidrug Resistance protein


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.1  32.4   4.3e-94   3.8e-90       1     312 []      19     328 ..      18     328 .. 0.98

  Alignments for each domain:
  == domain 1  score: 302.1 bits;  conditional E-value: 4.3e-94
       FecCD   1 llllllllslllgavkispsevfeallgkadsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgsls 99 
                 ll+l+ +lsl++ga ++++ +vf a++g  +s++ +ivl+ rlpr+la+ll+G+aL++aGal+Qt+trNpLadP++lG++sga++++vl+++l+ g +s
  CTQ26994.1  19 LLALAAALSLTIGAKSLPIGTVFTAFSGTCQSADCTIVLDARLPRTLAGLLAGVALGLAGALMQTLTRNPLADPGLLGVNSGASFAIVLGAALF-GITS 116
                 5788999**************************************************************************************9.**** PP

       FecCD 100 lfalplaaflgallalllvllla.rkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvlllllllllllla 197
                  +  +l+af gal+a+llv +   +++++ sp++l LaG+a++a+l++l++ ++ll n++ +++++fw +Gsl  ++++++ ++l+ ++++ +++lll+
  CTQ26994.1 117 PQEQLLLAFCGALCASLLVAFTGsQGGGQLSPVRLTLAGVALAAVLEGLSNGIALL-NPDVYDQLRFWQAGSLDIRTLQTLKIVLLPVVVAGIAALLLS 214
                 ***************99999988799999*************************99.****************************************** PP

       FecCD 198 rkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgi 296
                 r l+ l+lg +tA++lG +v+r++l+ l+++++l+++a+a+vGpi+F+GL++Ph+ar lvgadhr+ lp++ l++ +lll+ad+++rll+ p el v++
  CTQ26994.1 215 RALNSLSLGNDTATALGSRVARTQLIGLIVITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADVIGRLLV-PGELRVSV 312
                 *****************************************************************************************8.9******* PP

       FecCD 297 vtaliGapffiylllr 312
                 v a++Gap++i+l++r
  CTQ26994.1 313 VSAFLGAPVLIWLVRR 328
                 *************997 PP

>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.4     0.009        81      32      65 ..      15      47 ..       1      55 [. 0.72
   2 ?   -2.9   0.0       1.3   1.2e+04      23      42 ..     140     159 ..     120     169 .. 0.55
   3 ?    9.4   0.9   0.00019       1.7      26      76 ..     193     243 ..     182     256 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.009
                    --HHHHHHHHHHHHHHHHH-------HHHHHHHH CS
  Multi_Drug_Res 32 sllvivgygisfllLskalkslpvsvAYavwsGi 65
                     ll ++  +++ l L+   kslp++++++ +sG 
      CTQ26994.1 15 GLL-LLLALAAALSLTIGAKSLPIGTVFTAFSGT 47
                    333.334556667789999************995 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.3
                     -----------HHHHHHHHH CS
  Multi_Drug_Res  23 segftkltpsllvivgygis 42 
                     s+g  +l p+ l+++g++++
      CTQ26994.1 140 SQGGGQLSPVRLTLAGVALA 159
                     45555555555555555544 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00019
                     --------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH CS
  Multi_Drug_Res  26 ftkltpsllvivgygisfllLskalkslpvsvAYavwsGiGtvlivlvgil 76 
                     ++ l+++ll +v+ gi+ llLs+al+sl ++   a+  G+ ++ + l+g++
      CTQ26994.1 193 LQTLKIVLLPVVVAGIAALLLSRALNSLSLGNDTATALGSRVARTQLIGLI 243
                     5667888889999******************99999999999988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2491.19
//
Query:       CTQ26995.1  [L=413]
Description: enterobactin exporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-25   89.0  60.4    1.2e-16   60.7  25.6    2.0  2  MFS_1     Major Facilitator Superfamily
    1.1e-22   80.2  34.6    1.4e-22   79.8  34.6    1.0  1  MFS_3     Transmembrane secretion effector
     0.0029   16.5   1.3       0.62    8.8   0.2    2.3  2  PTR2      POT family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7  25.6   1.9e-20   1.2e-16       1     223 [.      22     236 ..      22     245 .. 0.82
   2 !   32.6  30.4   6.5e-12   3.9e-08      10     171 ..     237     398 ..     230     412 .. 0.87

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 1.9e-20
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllf.a....sslwlllvlrvl 94 
                 +++a f+s+l+ ++lg+a+p  ++     s  ++gl +tl ++ ++v+ +++G+l+dr+ r+r++ll+  + ++g++ l++ a    +sl ++++l + 
  CTQ26995.1  22 VFIARFISILSLGLLGVAIPVQIQMMT-HSTWQVGLSVTLTGASMFVGLMVGGVLADRYERKRLILLARGTCGVGFVGLCLnAllpePSLAAIYLLGIW 119
                 699*****************7554444.48888**********************************999999994444443345766666******** PP

       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgp 193
                  G++a+++++a +a++ +++ +e+ ++a ++ ++++ lG+++ p++ggll++ +g  + f ++a+ +++  +    ll+ ++ ++++++ +       +
  CTQ26995.1 120 DGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPMIGGLLLATGGVAWNFGLAAAGTFITTL---TLLRLPQLPPPPQPREHP----LR 211
                 **********************************************************************99...555555555555544444....44 PP

       MFS_1 194 aplvpawkallkdpvlwillialllfffgf 223
                 + l+  ++ l+++p +     +++l +  +
  CTQ26995.1 212 SLLAG-LTFLCRSPLI----GGIALLGGLL 236
                 45555.999*****55....4444443222 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 6.5e-12
       MFS_1  10 larsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpaga 107
                 +++s++ +++p ala + ++s+ +igll+++  lgaa+++l  G l++ + +  ++l++ ++++++++l+++  ++w l +++ +l G+ ++++  + +
  CTQ26995.1 237 TMASAVRVLYP-ALAGSWQMSAGQIGLLYAAIPLGAALGALTSGQLAQTVRPGALMLATTVGSFVAIALFSL-MPHWaLGALCLALFGWLSAISSLLQY 333
                 45566788899.9*************************************9999999999999999333333.55676********************* PP

       MFS_1 108 aliadwfpkeergraigllsa....gfslGailgpllggllasslgWravfyilaivsllafvlflll 171
                 +li   +p+   gr +gl++a    g ++Ga+l  +lg++++ +++ +a+ ++la+v++l++    ll
  CTQ26995.1 334 TLIQTQTPEHMLGRINGLWTAqnvtGDAIGAALLGGLGAVMTPAASASASGWALALVGVLLVG---LL 398
                 *********************999999999999999999********************9833...33 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8  34.6   2.4e-26   1.4e-22       9     397 ..      16     403 ..      11     411 .. 0.91

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 2.4e-26
       MFS_3   9 qkvFrviWiaslvsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlll 107
                 + +Fr+++ia  +s l   +  va+   +  ++ s  +v l    +   +f+  ++ G+laD ++r++++l +     ++ v l + a+l   s  ++ 
  CTQ26995.1  16 HPAFRAVFIARFISILSLGLLGVAIPVQIQMMTHSTWQVGLSVTLTGASMFVGLMVGGVLADRYERKRLILLARGTCGVGFVGLCLNALLPEPSLAAIY 114
                 679***********9999999********************8888888888888999******************999999999999999999999999 PP

       MFS_3 108 altlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavnalsylalivallrwkrevrksslprEkllea 206
                  l ++ g  a+l   a  A+++ lv r+++ +A a++ + + +   + P +gG+l+a+ G a+ f+++a   ++  ++llr   + ++ + prE+ l++
  CTQ26995.1 115 LLGIWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPMIGGLLLATGGVAWNFGLAAAGTFITTLTLLRLP-QLPPPPQPREHPLRS 212
                 9************************************************************************9999999985.6788899******** PP

       MFS_3 207 lraglRftaasreikavlvRaalFglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalas 305
                 l agl f   s+ i  + + + l   +asav  L P +a    +  a   G+l +a+ +GA lgal++ +L +++   +l+l ++v+  + ++  +l++
  CTQ26995.1 213 LLAGLTFLCRSPLIGGIALLGGLLT-MASAVRVLYPALAGS-WQMSAGQIGLLYAAIPLGAALGALTSGQLAQTVRPGALMLATTVGSFVAIALFSLMP 309
                 **************98877777765.5899*******9965.56778899*************************************9999999***** PP

       MFS_3 306 slwvavlvlllgGaaWitalstl.n.vavqlavPrWvvgRalavYltvlaGglaaGsllWGavaealsvtlaLlaaaaalllaaai..llllklpe 397
                 + ++ +l l+l G  W+ a+s+l + + +q+ +P+ + gR   ++ +    g a G++l G ++  ++ + +  a++ al l++++  +ll +l++
  CTQ26995.1 310 HWALGALCLALFG--WLSAISSLlQyTLIQTQTPEHMLGRINGLWTAQNVTGDAIGAALLGGLGAVMTPAASASASGWALALVGVLlvGLLRELRR 403
                 *********9987..****9987332569**************************************99999999999998877650144555555 PP

>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.2    0.0001      0.62      82     123 ..     153     194 ..     147     238 .. 0.84
   2 !    6.5   0.1   0.00052       3.1     337     380 ..     324     367 ..     275     385 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHH CS
        PTR2  82 fsiNvGSLlsliitpylqenvgyplgFgipavlmiiallvFl 123
                 + + +GS +s++i ++l  + g ++ Fg++a++ +i++l++l
  CTQ26995.1 153 LTVRLGSVISPMIGGLLLATGGVAWNFGLAAAGTFITTLTLL 194
                 66789********************************99887 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00052
                 HHHHCCCHHHHHHCTSS-TTTCCCCHHHHHHHHHHHHHHHHHHH CS
        PTR2 337 selfasiggleffykeapksmkslitglflltnalgnflssvla 380
                    + s+ + + ++++ p++m + i gl++++n +g+++++ l+
  CTQ26995.1 324 LSAISSLLQYTLIQTQTPEHMLGRINGLWTAQNVTGDAIGAALL 367
                 4556688899999*************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2767.92
//
Query:       CTQ26996.1  [L=319]
Description: iron-enterobactin transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-26   93.3   0.0    2.1e-26   92.9   0.0    1.1  1  Peripla_BP_2  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   1.2e-30   2.1e-26       1     235 [.      49     296 ..      49     299 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 1.2e-30
                   EEE-SHHHHHHHHHTT-GGGEEEB-GGG--GGGGGGT..........TS-BSBESSSB-HHHHHHH--SEEEE-GGG....GGGHHHHHHHS-EEE- CS
  Peripla_BP_2   1 iaslspsvteillalGatdkvvgvdtttsdpldadklee........aivevgadgeidvEklaalkPDlvilskgl.gltdedeellksgiptviv 88 
                   i+s+s + t+ lla++a+    g  t +++++d+++ +          +    + ge++ E++aa  PDl+++s+++ + +   +++lk ++pt++ 
    CTQ26996.1  49 IVSTSVTLTGSLLAIDAPVVASGATTPNNRVADSQGFLRqwsevakaRKLARLYIGEPSAEAVAAQMPDLILVSATGgDSALPLYDQLKTIAPTLVI 145
                   89*************8888777777777777777777779999999999****************************8888899************* PP

                   ---TTSHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT.-EEEEEEEETTE..EEEE-TTSTTTHHHHTS--EESTTT--........ CS
  Peripla_BP_2  89 essntgeslkeqiralgellgledeaeklvaeidsklaaaksaidsekpkpvlvfggadeggyvvagsnsyigdlldalgieniaaesk........ 177
                   +++    s+++ +++lg+++g+e++a + +a++++ l ++k++ +   ++ ++++++a++ +  + +  s  g++l +lg+  ++  ++        
    CTQ26996.1 146 NYDD--KSWQTLLTQLGQITGHEQQASARIADFNKQLVSLKEKMKLPPQPVTALVYTAAAHSANIWTPESAQGQMLQQLGFSLATLPGGlpashsqg 240
                   ****..9****************************************99999999999999***********************555556***9999 PP

                   .STT-EEE-HHHHHH.H--SEEEEEEHHHHT-S--HHHHT-SHHHHTSHHHHTT-EEEE- CS
  Peripla_BP_2 178 .kseyeeisaEqila.sdpdvifvsgraeadnktgleflkenpllaelpAvkngrVyald 235
                     ++  +++ E+++a  +++ +f         +++++++ +nplla+lpAv+ +rVy l+
    CTQ26996.1 241 kRHDIVQLGGENLAAgLNGQSLFLFAG----DQKDADAIYANPLLAHLPAVAGKRVYPLG 296
                   999999*****************9988....8*************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2270.19
//
Query:       CTQ26997.1  [L=391]
Description: isochorismate synthase 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-67  225.6   0.0    9.5e-67  225.3   0.0    1.1  1  Chorismate_bind  chorismate binding enzyme


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.3   0.0   5.3e-71   9.5e-67       2     258 .]     126     380 ..     125     380 .. 0.97

  Alignments for each domain:
  == domain 1  score: 225.3 bits;  conditional E-value: 5.3e-71
                      HCHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEE.EEEESSEEEEEETTSEEEEECEEEEEEH CS
  Chorismate_bind   2 redYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsel.lgaSPElllkveggrrietepiaGTrar 94 
                      ++++ ++ve++ +  ++ +++kvvlsr ++++++++vd+ al+++l a+npa++ f + l+d ++ lgaSPElll++eg+ ++ + p+aG+++r
       CTQ26997.1 126 QDAFLAMVERAAALTATPEVDKVVLSRLIDITTRDRVDSGALMERLIAQNPASFNFHVPLSDGGVlLGASPELLLRKEGQ-HFSSLPLAGSARR 218
                      7899******************************************************88886555************76.************* PP

                      SSSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESHH CS
  Chorismate_bind  95 gktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkk 188
                      + ++  d+++ ++ll++ K+r+Eh+++++++ + Lg+   +++++ pe++++ ++++++hl++ i g++  + ++++l + l+Pt+a++G+P +
       CTQ26997.1 219 QPDDVLDREAGNRLLASGKDRHEHELVTQAMKSVLGPR--SSQLSLPESPQLITTPTLWHLATPIAGTALAEENAMSLACLLHPTPALSGFPHQ 310
                      **************************************..8***************************************************** PP

                      HHHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 189 rameiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      +a ++i+elE+++R++++G+vg++d +g++e++v+IR+a +++++lrl+aGaGIv +S+p  E++Et  K
       CTQ26997.1 311 AAKRLIAELEPFDRQLFGGIVGWCDDEGNGEWVVTIRCARLQQRTLRLFAGAGIVPASSPLGEWRETGVK 380
                      *******************************************99**********************877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2939.58
//
Query:       CTQ26998.1  [L=535]
Description: 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-73  246.2   0.0    5.8e-73  245.9   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    4.2e-10   40.5   0.2    1.4e-09   38.7   0.2    2.0  1  AMP-binding_C  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
      0.021   13.7   0.0      0.047   12.5   0.0    1.5  2  GH3            GH3 auxin-responsive promoter
      0.093   12.6   0.0       0.23   11.3   0.0    1.6  1  SurA_N_2       SurA N-terminal domain
       0.13   11.8   2.5        3.9    7.1   0.1    2.7  2  DUF761         Cotton fibre expressed protein


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.9   0.0   1.6e-76   5.8e-73       8     422 ..      35     436 ..      30     437 .. 0.84

  Alignments for each domain:
  == domain 1  score: 245.9 bits;  conditional E-value: 1.6e-76
                  STTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE....E. CS
  AMP-binding   8 tpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli....a. 100
                    d+va++d  + ++++Yr++++ v++lA  L++ G+k+g++ ++ l n +e++++++a+l++G+++v    + ++ el    ++ ++ +li    + 
   CTQ26998.1  35 ENDAVAIID--GERQISYRQFNQLVDNLACSLQRQGLKRGETALVQLGNVAEFYMTFFALLRIGVAPVNALFSHQRSELNAYAAQIKPALLIadreHa 130
                  4699***99..9*********************99*********************************************************765424 PP

                  .TCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHC CS
  AMP-binding 101 .tvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletr 196
                      ++  l++  +++++l      + l +++  +  +l +e + +++   +  ++++ +d++a+++ ++G+TG+PK +  +h+ + ++++  + e  
   CTQ26998.1 131 lF-ADDSfLHAFIAEHPSL-----RVALLRNDGGER-DLATEINRPAD---NFIANPTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSIRRSN-E-I 216
                  32.2333355555555443.....333333332222.22222222222...224557889**************************99999953.2.2 PP

                  SCCTTT-EEEESS-TTSCHHHHH.HHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS CS
  AMP-binding 197 fklkeddvvlsilplahifglil.elllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllgge 293
                   +++++ ++l  lp ah +++++ + l+++l+G++v+l+   +a   +l++ lie+++++v  +vP ++  +l++  + ++ ++ +l+sl+l+ +gg+
   CTQ26998.1 217 CGINAETRYLNALPAAHNYAMSSpGSLGVFLAGGRVILAADPSA---TLCFPLIEQHQINVASLVPPAVSLWLQA--IHEWGSNAQLQSLQLLQVGGA 309
                  3457899*************754379************885555...56899********************997..333345569************ PP

                  -EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-T.TEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEE CS
  AMP-binding 294 plspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplp.gvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafd 390
                  +ls++l+ ++ a  g+++ +++G++E ++  t   ++ +++ ++++G p++ + ev ++D + g+p+p+ge+G l+ rgp +++gY++ p+ +aeafd
   CTQ26998.1 310 RLSATLAARIPAEIGCQLQQVFGMAEGLVNYT-RLNDSPERIINTQGCPMCpDDEVWVADAD-GNPLPRGEVGRLMTRGPYTFRGYYNSPQHNAEAFD 405
                  *******************************9.455777789*******977*********9.**********************************9 PP

                  ETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 391 segrwlrTGDlgrldedGyleivgRkkdlikl 422
                  +e +++ +GDl  +dedGy+ + gR kd+i++
   CTQ26998.1 406 AE-GFYCSGDLISIDEDGYITVQGREKDQINR 436
                  55.7**************************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.2     4e-13   1.4e-09       1      76 []     445     519 ..     445     519 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 4e-13
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHH.HT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrk.elgpyavpkkvvfvdelpktrsGK 76 
                    e+E+ l++h+aV  aa v + d++ Ge  +a+ v    s++ + ++++++r+  +++++ p++v++v++lp+t  GK
     CTQ26998.1 445 EIENLLLRHEAVIHAALVSIEDNLLGEKSCAYLVVT--SPLRAVAVRRFLREqGVAEFKLPDRVECVAALPLTPVGK 519
                    8*******************************9993..2234699*****8768999*******************9 PP

>> GH3  GH3 auxin-responsive promoter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.3e-05     0.047      55     102 ..     161     208 ..     160     236 .. 0.81
   2 ?   -2.8   0.0       0.6   2.2e+03     391     422 ..     424     455 ..     423     464 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHTT.CC.CTSSSS-SEEEEECCEETTEEEEEEESHHHHHH CS
         GH3  55 dlepyieriakG.eqnvLtsepiklfalsSGTtsgksKliPvteeslke 102
                 dl+ +i+r a+    n   ++++ +f+ls G+t g +KliP t++ ++ 
  CTQ26998.1 161 DLATEINRPADNfIANPTPADEVAFFQLSGGST-GTPKLIPRTHNDYDY 208
                 566677777777744456789************.*********997764 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.6
                 EEEEECCTEEE-SSSS-CCHHHHHHHHH.HHH CS
         GH3 391 leFvgRknvvlsidgeklteeelqkaveeaak 422
                 ++++gR++  ++  gek+  ee+++ + +  +
  CTQ26998.1 424 ITVQGREKDQINRGGEKIAAEEIENLLLRHEA 455
                 67889******************999875554 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.5e-05      0.23      36      72 ..      32      68 ..      23      82 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.5e-05
    SurA_N_2 36 fssssnevaeVnGe.kIslqefqqaveearqqlqqqlg 72
                +++++++va ++Ge +Is+++f+q v+++   lq+q g
  CTQ26998.1 32 RHAENDAVAIIDGErQISYRQFNQLVDNLACSLQRQ-G 68
                445899*******988*************9999988.4 PP

>> DUF761  Cotton fibre expressed protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.012        42      22      33 ..      45      56 ..      45      58 .. 0.90
   2 ?    7.1   0.1    0.0011       3.9       3      14 ..     165     176 ..     163     176 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.012
      DUF761 22 QRqeSilryqem 33
                +Rq+S++++++ 
  CTQ26998.1 45 ERQISYRQFNQL 56
                8*********96 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0011
      DUF761   3 evDakAEeFIak 14 
                 e+++ A++FIa+
  CTQ26998.1 165 EINRPADNFIAN 176
                 9*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4029.63
//
Query:       CTQ26999.1  [L=283]
Description: isochorismatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-39  134.3   0.0      6e-39  134.0   0.0    1.1  1  Isochorismatase  Isochorismatase family
    7.6e-08   32.6   0.1    1.3e-07   31.9   0.1    1.4  1  PP-binding       Phosphopantetheine attachment site


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.0   0.0   6.7e-43     6e-39       2     175 .]      32     205 ..      31     205 .. 0.98

  Alignments for each domain:
  == domain 1  score: 134.0 bits;  conditional E-value: 6.7e-43
  Isochorismatase   2 alvviDmqndfveegvkeseeisavveninkllkaarkagipviftrdvheleevkgdlderkaaphfkpgttgaelvpelaplegdvvvdKtr 95 
                      al++ Dmq++f++ ++++s+ +++vv+ni+ l + ++++gipv +t +  e ++  + l  + + p +++++++++++ +lap+e+d v+ K+r
       CTQ26999.1  32 ALLIHDMQEYFLNFWGENSAMMEKVVANIAALRDFCKQNGIPVYYTAQPKEQSDEDRALLNDMWGPGLTRSPEQQQVIAALAPDEDDTVLVKWR 125
                      9********************************************************************************************* PP

  Isochorismatase  96 fsafagtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlkqafatvitted 175
                      +saf  ++l+e+Lke+g+++++++G+ +++++++ta+da+ ++ +++ v+DA a++s+e+h +alk ++ + + v+ te+
       CTQ26999.1 126 YSAFHRSPLEEMLKETGRDQLIITGVYAHIGCMTTATDAFMRDIKPFFVADALADFSREEHLMALKYVAGRSGRVVMTEE 205
                      *********************************************************************99988888875 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   1.4e-11   1.3e-07       2      63 ..     215     274 ..     214     278 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 1.4e-11
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlael 63 
                 +lr+l+  +l+ ++e++d d++l d+GlDS+ +++l+a+ ++  g +i+  +l  +pt+ ++
  CTQ26999.1 215 ALRALILPLLDESDEPLD-DENLIDYGLDSVRMMALAARWRKVHG-DIDFVMLAKNPTIDAW 274
                 699*********999996.***********************976.*******99****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2146.01
//
Query:       CTQ27000.1  [L=251]
Description: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-51  173.7   1.2    5.9e-51  173.3   1.2    1.2  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    3.7e-45  153.8   2.5    1.5e-44  151.8   2.5    1.7  1  adh_short      short chain dehydrogenase
    2.9e-11   43.6   3.4    1.6e-10   41.2   0.2    2.2  2  KR             KR domain
     0.0063   16.0   0.1      0.033   13.7   0.1    1.9  1  Epimerase      NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.01   15.7   0.1       0.02   14.8   0.1    1.6  1  DFP            DNA / pantothenate metabolism flavoprotein
       0.16   12.4   0.1       0.32   11.5   0.1    1.7  1  NAD_binding_7  Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.3   1.2     2e-54   5.9e-51       1     234 []      15     248 ..      15     248 .. 0.91

  Alignments for each domain:
  == domain 1  score: 173.3 bits;  conditional E-value: 2e-54
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   Ga +gIG+a+A a+ e+Ga+v   dl  ++        e+++ +   +DV+d +qv+++ +++ +++++lD+lvn+agi +   g + ++s e++++
    CTQ27000.1  15 GAGKGIGYATALAFVEAGANVTGFDLAFDG--------ESYPFATETLDVADADQVREACSRLLANTERLDVLVNAAGILRM--GATDQLSAEDWQQ 101
                   889**************************9........445555569***********************************..************* PP

                   HHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHH..... CS
  adh_short_C2  98 aldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfde..... 187
                   +++vn+ ++f+l ++ +  ++++  g+iv+++s +a+    + +ayga+Kaal++l+ ++  el+  g+R+N vspg ++T++++ +  +d+     
    CTQ27000.1 102 TFAVNVGGAFNLFQQTMAQFRRQrgGAIVTVASDAAHTPRIGMSAYGASKAALKSLALTVGLELAGSGVRCNLVSPGSTDTDMQRTLWVSDDaeqqr 198
                   ***************9995555555**********************************************************99886543322233 PP

                   ...HHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 188 ...lleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                      + e+++  +plg++++p+e+a+++lfLas +as it q++vvDgG t
    CTQ27000.1 199 irgFGEQFKLGIPLGKIARPQEIANTILFLASSHASHITLQDIVVDGGST 248
                   44467889999*************************************76 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.8   2.5     5e-48   1.5e-44       2     190 ..      10     188 ..       9     192 .. 0.95

  Alignments for each domain:
  == domain 1  score: 151.8 bits;  conditional E-value: 5e-48
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 +v vtGa++GIG+a+a +++++Ga+v+ +d   +           e+  + + ++Dv+d+++v+++ ++  +++++ldvLvn AGi ++g++ +ls+e+
  CTQ27000.1  10 TVWVTGAGKGIGYATALAFVEAGANVTGFDLAFD-G---------ESYPFATETLDVADADQVREACSRLLANTERLDVLVNAAGILRMGATDQLSAED 98 
                 899***********************99888755.2.........244577889********************************************* PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 w+++++vN+ g+f+l ++ + ++ +q++G+Iv+v+S a++ p +g++aY+AsKaa+++l+ ++  ela +g+r+n v PG +dTdm+++l
  CTQ27000.1  99 WQQTFAVNVGGAFNLFQQTMAQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALTVGLELAGSGVRCNLVSPGSTDTDMQRTL 188
                 **************************************************************************************9875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.4     0.026        79       2      26 ..      10      34 ..       9      36 .. 0.91
   2 !   41.2   0.2   5.2e-14   1.6e-10      59     160 ..      53     158 ..      47     174 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.026
                EEEEETTTSHHHHHHHHHHHHHHS- CS
          KR  2 tylitGGlGgLGlelarwlaekgar 26
                t+ +tG+  g+G ++a   +e ga+
  CTQ27000.1 10 TVWVTGAGKGIGYATALAFVEAGAN 34
                678******************9985 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 5.2e-14
                 ---TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHH CS
          KR  59 aaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaN 153
                  +Dv+d+d+v+++ +++ a+++++   ++aAg+lr ++ ++++aed++q +a  v Ga nL + +      ++   +v+++S a+ +   g ++Y a  
  CTQ27000.1  53 TLDVADADQVREACSRLLANTERLDVLVNAAGILRMGATDQLSAEDWQQTFAVNVGGAFNLFQQTMAqfrrQRGGAIVTVASDAAHTPRIGMSAYGASK 151
                 68***********************************************************88776556669999************************ PP

                 HHHHHHH CS
          KR 154 aflDala 160
                 a l +la
  CTQ27000.1 152 AALKSLA 158
                 *999998 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   1.1e-05     0.033       2     176 ..      12     178 ..      11     191 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HH....HHHHHHHHH.T-SEEEE--S.-...--HHHHHHSHHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrs....alerlfkee.qpdavihlAa.v...ggvaassedpadfiekn 91 
                  VtGa   iG a++ a+ e+g +v+g+d   +++           +ld+ d++    a+ rl++++ + d+ +++A+     ++ + s+ed ++++  n
  CTQ27000.1  12 WVTGAGKGIGYATALAFVEAGANVTGFDLAFDGESYPF----ATETLDVADADqvreACSRLLANTeRLDVLVNAAGiLrmgATDQLSAEDWQQTFAVN 106
                 69****9********************99944444333....5568888888822233334444445*********9544445666788888999999* PP

                 THHHHHHHHHHHHH.TCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT CS
   Epimerase  92 lqgtlnlleaarka.gvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr 176
                 + g+ nl++   ++   +r   + +  v  + a++p+            s+Y+a+K+a  +l+  +  +    a ++  +nl++p+
  CTQ27000.1 107 VGGAFNLFQQTMAQfRRQRGGAIVT--VASDAAHTPRI---------GMSAYGASKAALKSLALTVGLEL---AGSGVRCNLVSPG 178
                 ****999987654422222222222..33333443322.........33466666666666666665555...3444445555555 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   6.6e-06      0.02      31      92 ..      20      85 ..      14     161 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.6e-06
                HHHHHHHHHHHTT-EEEEEE-S-SS--.-TT-EEEE--SHHHHHHHHHHHHTT-...SEEEE---S CS
         DFP 31 mGyalAeaaaarGaeVtlvsgpvslet.pegvevvkvesaeemleaveealkea...divimaAAv 92
                 Gya A a++++Ga+Vt      + e  p ++e+++v +a++ +ea+ + l+++   d+++ aA +
  CTQ27000.1 20 IGYATALAFVEAGANVTGFDLAFDGESyPFATETLDVADADQVREACSRLLANTerlDVLVNAAGI 85
                69****************999987665266889***************998655567*****9976 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00011      0.32       2      40 ..       3      42 ..       2     138 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
  NAD_binding_7  2 fldlkgkkvlvvGgGe.vAarkvrklleagakvtvvapev 40
                   +ld++g++v v G+G+ +++  +  ++eaga+vt  + ++
     CTQ27000.1  3 ALDFRGQTVWVTGAGKgIGYATALAFVEAGANVTGFDLAF 42
                   689************879****************877774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1981.29
//
Query:       CTQ27001.1  [L=137]
Description: putative esterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-18   66.5   0.1      3e-18   65.9   0.1    1.3  1  4HBT      Thioesterase superfamily
     0.0042   17.2   0.0     0.0057   16.8   0.0    1.3  1  DUF4442   Domain of unknown function (DUF4442)
  ------ inclusion threshold ------
      0.093   13.0   0.3       0.12   12.6   0.3    1.2  1  4HBT_3    Thioesterase-like superfamily
       0.12   12.2   0.0        1.8    8.5   0.0    2.1  2  DUF1604   Protein of unknown function (DUF1604)


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.1   6.7e-22     3e-18       1      79 []      50     127 ..      50     127 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 6.7e-22
                 TSSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEEE CS
        4HBT   1 gGvvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrlva 79 
                 +G +hgG+ +al+++ +++a +    +g++vv+ el++ ++r+v  g +++ e+r+l+lgr+s+++e+ v+de+gr ++
  CTQ27001.1  50 FGLLHGGASAALAETLGSMAGWLMTEEGQCVVGTELNASHHRAVSSG-KVRGECRPLHLGRQSQSWEIVVYDEKGRRCC 127
                 699********************************************.****************************997 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.3e-06    0.0057      16     126 ..      21     129 ..       9     135 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-06
                 GGGG--EEEEEETTEEEEEE---GGGB-TTSSB-HHHHHHHHHHHHHHHHHHHS-TTEEEEEEEEEEEE-S-.--S-EEEEEE-TTS-TT--EEEEEEE CS
     DUF4442  16 fgtvgprieelepgraevrlkkrrrvrNhigtvHAiAicnlaElamGllaeatlpdthrwipkgmevdYlak.atgdltavaelepedvgekeelvvev 113
                 ++ +g+ +++le g  e++++  +r++  +g +H++A ++laE+  ++     +++++ ++ +  + +  +  + g+++ + +  p  +g +++   e+
  CTQ27001.1  21 VAHLGIIYTRLEEGLLEAEMPVDARTHQPFGLLHGGASAALAETLGSMAGWLMTEEGQCVVGTELNASHHRAvSSGKVRGECR--PLHLG-RQSQSWEI 116
                 6678999*************************************999988888888888888888888776646666766554..44444.44555666 PP

                 EEEETTE.EEEEE CS
     DUF4442 114 evrdekgeevvra 126
                  v+dekg+   ++
  CTQ27001.1 117 VVYDEKGRRCCTC 129
                 7777777666665 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   2.8e-05      0.12       6      80 ..      47     130 ..      42     136 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.8e-05
                 ECTTC..-HHHHHHHHHHHHHHT.......-S.SS..EEEEEEE-S---SEEEEEEEEEEE--SS-EEEEEEEEET.TEEEEEEE CS
      4HBT_3   6 tpggag.yGGyvlAlalraaqrtv......pdprl..hslhvyFlrpgdagpviyhvervrdGrsfstrtvelsqg.grpiftat 80 
                 +++ +  +GG+ +Ala      +        +  +    l ++  r++++g+v+ +++++  Gr+ + +++ ++ + gr + t+ 
  CTQ27001.1  47 HQPFGLlHGGASAALAETLGSMAGwlmteeGQC-VvgTELNASHHRAVSSGKVRGECRPLHLGRQSQSWEIVVYDEkGRRCCTCR 130
                 555554499999999887777543455544332.25789999*******************************886699998875 PP

>> DUF1604  Protein of unknown function (DUF1604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0004       1.8      20      40 ..      51      71 ..      37      75 .. 0.84
   2 ?    1.5   0.0     0.059   2.7e+02       3      17 ..     112     126 ..     110     132 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0004
     DUF1604 20 GAftGGfsaGyfntVGskeGw 40
                G   GG sa   +t Gs  Gw
  CTQ27001.1 51 GLLHGGASAALAETLGSMAGW 71
                7789***************** PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.059
     DUF1604   3 pvwkqevtdekgrrr 17 
                 + w+  v dekgrr 
  CTQ27001.1 112 QSWEIVVYDEKGRRC 126
                 579999*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 999.46
//
Query:       CTQ27002.1  [L=701]
Description: starvation-induced protein involved in peptide utilization during carbon starvation [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.6e-170  565.9  29.7   3.6e-170  565.9  29.7    1.8  2  CstA           Carbon starvation protein CstA
    4.1e-35  120.6   7.0    4.1e-35  120.6   7.0    3.5  4  CstA_5TM       5TM C-terminal transporter carbon starvation C
  ------ inclusion threshold ------
        1.9    8.2  10.2        6.4    6.4   1.2    3.5  3  Baculo_11_kDa  Baculovirus 11 kDa family
        2.7    8.0   6.3       0.21   11.6   0.7    2.1  2  DUF1676        Protein of unknown function (DUF1676)
        4.8    7.2   8.4          3    7.9   0.4    3.5  3  MerE           MerE protein


Domain annotation for each model (and alignments):
>> CstA  Carbon starvation protein CstA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  565.9  29.7    1e-173  3.6e-170       1     367 [.      32     404 ..      32     414 .. 0.98
   2 ?   -2.6   0.1      0.55     2e+03     134     150 ..     649     665 ..     634     685 .. 0.61

  Alignments for each domain:
  == domain 1  score: 565.9 bits;  conditional E-value: 1e-173
        CstA   1 mnavllvvvavvvfviayrfYgkfiakkvlklddkraTPaerledgkdyvptnklvlfghhFasiagagPlvGpvlAaqfGylPgllWilvGavfagav 99 
                 +na+++vv+av+v++iayrfYg +iak+vl++d++r+TPa r++dg dyvpt+k vlfghhFa+iagagPlvGpvlAaq+GylPg++Wil+G+v+agav
  CTQ27002.1  32 INALWIVVAAVCVYLIAYRFYGLYIAKTVLGVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWILAGVVLAGAV 130
                 79************************************************************************************************* PP

        CstA 100 hDfvvlvasvrrkgkslgelakkelgkvakllallaillililvlavlalvvvkalaespaavfsviltipialllGvllrklrkg.vleasvigvvll 197
                 +Df+vl++s+rr+g+slgel+k+e+g++a++lal+a+++i++++lavla++vvkal++sp+++++v++tip+a+++G+++r+lr+g + e+svig+v+l
  CTQ27002.1 131 QDFMVLFVSTRRDGRSLGELVKEEMGPTAGVLALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLAIFMGIYIRYLRPGrIGEVSVIGLVML 229
                 *************************************************************************************************** PP

        CstA 198 llavvvgsev.eea.laelltlsketlaivlivYvfvAsvlPvwlllaPrdYlstflligtivllalgilvvapelklpavtefvdgegpvfagslfPl 294
                 + a++ g +v e++ +a ++ ++ ++l+++l+ Y+fvA+vlPvwlllaPrdYlstfl+igtiv+la+gil+++p+l++pa+t+fvdg+gpv++g+lfP+
  CTQ27002.1 230 VFAIISGGWVaESPtWAPWFDYTGVQLTWILVGYGFVAAVLPVWLLLAPRDYLSTFLKIGTIVGLAIGILIMRPTLTMPALTKFVDGTGPVWTGNLFPF 328
                 **********88889************************************************************************************ PP

        CstA 295 lfitiACGaiSGFHslvssgttskllekesdarlvgygamllEslvailalvaaavlepaayfalnsaaavl...g 367
                 lfitiACGa+SGFH+l+ssgtt+k+l++es+a ++gyg+ml+Es+vai+alvaa++++p++yfa+ns++avl   g
  CTQ27002.1 329 LFITIACGAVSGFHALISSGTTPKMLANESQACFIGYGGMLMESFVAIMALVAACIIDPGVYFAMNSPMAVLapaG 404
                 ********************************************************************99985542 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.55
        CstA 134 laillililvlavlalv 150
                  + ++i+++vla +++ 
  CTQ27002.1 649 TIFFMIVVVVLALFSIK 665
                 34445555555555433 PP

>> CstA_5TM  5TM C-terminal transporter carbon starvation CstA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.4       1.9   6.9e+03      55      74 ..      20      40 ..       5      48 .. 0.55
   2 ?    2.4   1.7     0.056     2e+02      67     110 ..     162     206 ..     112     211 .. 0.78
   3 !  120.6   7.0   1.2e-38   4.1e-35       2     116 .]     469     596 ..     468     596 .. 0.92
   4 ?   -3.6   0.6       3.9   1.4e+04       7      20 ..     651     664 ..     645     670 .. 0.52

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.9
    CstA_5TM 55 alavllllwg.....gintlWplFG 74
                al+++    +     +in+lW + +
  CTQ27002.1 20 ALGYI----AlnrgeQINALWIVVA 40
                33333....1233357777776654 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.056
    CstA_5TM  67 ntlWplFGaaNQlLAalaLlvvtvwll.ktgrkalvtliPmvfml 110
                  +l   F +   +LA la++vv ++    +g +++++ iP+++ +
  CTQ27002.1 162 LALVACFMIMVIILAVLAMIVVKALTHsPWGTYTVAFTIPLAIFM 206
                 555666666666899****9999999988899999999**98765 PP

  == domain 3  score: 120.6 bits;  conditional E-value: 1.2e-38
    CstA_5TM   2 avaytfailfvalfalTtlDtatRlaRyilqellgelk...kkaltnkyvatliavalavllllwg............gintlWplFGaaNQlLAalaL 85 
                 +++y+failf+alf+lT++D++tR aR++lq+llg ++   kk  t++++a+l+a+al+vl+  wg            gintlWplFG+aNQ+LA++aL
  CTQ27002.1 469 SFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVISpglKK--TSSLPANLLATALCVLA--WGyflhqgvvdplgGINTLWPLFGIANQMLAGMAL 563
                 79*********************************99987433..5788**********999..88888899999999********************* PP

    CstA_5TM  86 lvvtvwllktgr..kalvtliPmvfmlvvtlta 116
                 ++++v+l+k++r  +a+v l+P+ ++l++tlta
  CTQ27002.1 564 MLCAVVLFKMKRqrYAWVALLPTSWLLICTLTA 596
                 ********666668****************997 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 3.9
    CstA_5TM   7 failfvalfalTtl 20 
                 f +++v+++al ++
  CTQ27002.1 651 FFMIVVVVLALFSI 664
                 44444444444444 PP

>> Baculo_11_kDa  Baculovirus 11 kDa family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0025       8.9      39      58 ..     164     183 ..     139     190 .. 0.75
   2 ?   -2.5   0.2       1.1     4e+03      35      47 ..     560     572 ..     555     573 .. 0.74
   3 ?    6.4   1.2    0.0018       6.4      41      75 ..     646     680 ..     628     686 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0025
  Baculo_11_kDa  39 vicglvvfvvivlfilLlvv 58 
                    ++++++++v+i+  + ++vv
     CTQ27002.1 164 LVACFMIMVIILAVLAMIVV 183
                    56777777777766666654 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
  Baculo_11_kDa  35 dFvLvicglvvfv 47 
                       L++c++v+f 
     CTQ27002.1 560 GMALMLCAVVLFK 572
                    5679999999985 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0018
  Baculo_11_kDa  41 cglvvfvvivlfilLlvvilknaeaeeaekekrek 75 
                    +gl +f +iv+ +l l++i +   a + +k   ++
     CTQ27002.1 646 AGLTIFFMIVVVVLALFSIKTALAALKENKPTAKE 680
                    68999999999999999999998888887766665 PP

>> DUF1676  Protein of unknown function (DUF1676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.7   5.8e-05      0.21     121     156 ..     151     187 ..     125     205 .. 0.83
   2 ?   -3.8   0.6       3.3   1.2e+04     156     171 ..     557     572 ..     554     573 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.8e-05
     DUF1676 121 lkkmllplllalk.lklklLlplalgllallagKALl 156
                  k  ++p   +l+ +   ++++++l++la++++KAL+
  CTQ27002.1 151 VKEEMGPTAGVLAlVACFMIMVIILAVLAMIVVKALT 187
                 5679*********99999999**************97 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.3
     DUF1676 156 llgklaLllsaiiglk 171
                 +l+ +aL+l a++ +k
  CTQ27002.1 557 MLAGMALMLCAVVLFK 572
                 4666777776665544 PP

>> MerE  MerE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.2   4.3e+03      49      61 ..     116     128 ..     102     135 .. 0.59
   2 ?    7.9   0.4   0.00083         3       9      60 ..     148     199 ..     141     214 .. 0.84
   3 ?    2.4   0.2     0.041   1.5e+02      32      47 ..     481     496 ..     448     509 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.2
        MerE  49 geywviaalaltG 61 
                 g  w++a++ l+G
  CTQ27002.1 116 GMIWILAGVVLAG 128
                 3344444444444 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00083
        MerE   9 aetrkpltGylwGalavltcPchlpilaivlaGttaGaflgeywviaalalt 60 
                  e  k   G   G+la+++c   + i+ +vla     a+    w+  ++a+t
  CTQ27002.1 148 GELVKEEMGPTAGVLALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFT 199
                 567777888889***************************9999999999887 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.041
        MerE  32 lpilaivlaGttaGaf 47 
                 l il++v aGt a  f
  CTQ27002.1 481 LFILTAVDAGTRAARF 496
                 5566666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1042  (0.0581181); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 4596.14
//
Query:       CTQ27003.1  [L=65]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-29  102.0   0.3    1.4e-29  101.9   0.3    1.0  1  Sel_put   Selenoprotein, putative


Domain annotation for each model (and alignments):
>> Sel_put  Selenoprotein, putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.3   7.7e-34   1.4e-29       2      62 .]       5      65 .]       4      65 .] 0.97

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 7.7e-34
     Sel_put  2 lrralrrvrqylrllvGepdYerYvehmrrhHpdkppmsereFfrerqdarygnpggvRCC 62
                l++a+++++q++++++G+pdY++Yvehmr +Hpd++pm+++eFfrerqdaryg++gg +CC
  CTQ27003.1  5 LSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKGGAKCC 65
                6899*************************************************99977*** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 541.54
//
Query:       CTQ27004.1  [L=134]
Description: DNA binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-12   45.4   0.5    1.2e-11   44.4   0.4    1.5  1  HTH_3           Helix-turn-helix
    2.1e-09   37.6   0.6    3.2e-09   37.0   0.6    1.2  1  HTH_31          Helix-turn-helix domain
      6e-09   35.3   0.1    6.9e-07   28.7   0.1    2.2  2  Sigma70_r4      Sigma-70, region 4
    2.2e-06   27.3   0.7    0.00017   21.3   0.1    2.3  2  HTH_23          Homeodomain-like domain
    2.8e-05   24.1   0.2     0.0029   17.7   0.0    2.2  2  HTH_28          Helix-turn-helix domain
    3.8e-05   23.6   0.0      8e-05   22.6   0.0    1.6  1  HTH_19          Helix-turn-helix domain
    6.6e-05   22.7   0.3     0.0085   15.9   0.2    2.3  2  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
    8.2e-05   22.2   0.1     0.0021   17.7   0.0    2.3  2  Sigma70_r4_2    Sigma-70, region 4
    9.2e-05   21.9   0.1    0.00067   19.2   0.1    2.1  2  HTH_24          Winged helix-turn-helix DNA-binding
    0.00042   20.7   0.0     0.0007   20.0   0.0    1.4  1  HTH_26          Cro/C1-type HTH DNA-binding domain
    0.00054   19.9   0.2     0.0012   18.7   0.1    1.6  2  HTH_37          Helix-turn-helix domain
     0.0018   18.1   0.1     0.0044   16.9   0.1    1.6  1  HTH_25          Helix-turn-helix domain
     0.0027   18.0   0.2     0.0052   17.0   0.2    1.5  1  KORA            TrfB plasmid transcriptional repressor
     0.0038   17.2   0.1       0.64   10.0   0.0    2.3  2  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0059   16.4   0.9      0.018   14.9   0.1    2.1  3  P22_Cro         DNA-binding transcriptional regulator Cro
     0.0089   15.8   0.1      0.052   13.3   0.0    2.0  2  HTH_10          HTH DNA binding domain
  ------ inclusion threshold ------
      0.014   15.3   0.0      0.015   15.2   0.0    1.2  1  Sigma70_ECF     ECF sigma factor
      0.014   15.2   0.0      0.027   14.3   0.0    1.5  1  MarR_2          MarR family
      0.015   15.3   0.2      0.026   14.5   0.2    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
      0.018   14.4   0.1      0.037   13.4   0.1    1.5  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.041   14.1   0.2         11    6.3   0.1    2.6  3  Phage_CII       Bacteriophage CII protein
      0.043   13.4   0.0      0.091   12.3   0.0    1.5  1  GerE            Bacterial regulatory proteins, luxR family
       0.05   13.6   0.4        0.4   10.7   0.2    2.3  2  Pou             Pou domain - N-terminal to homeobox domain
      0.065   12.9   0.0       0.12   11.9   0.0    1.4  1  HTH_50          Helix-turn-helix domain
       0.07   13.7   0.0        0.1   13.2   0.0    1.3  1  HNF-1_N         Hepatocyte nuclear factor 1 (HNF-1), N termin
      0.071   13.0   0.0       0.18   11.7   0.0    1.6  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.073   13.2   0.0      0.097   12.8   0.0    1.2  1  MRP-L20         Mitochondrial ribosomal protein subunit L20
      0.078   12.8   0.0       0.24   11.2   0.0    1.8  2  HTH_38          Helix-turn-helix domain
       0.11   12.4   0.0       0.23   11.4   0.0    1.6  1  HTH_5           Bacterial regulatory protein, arsR family
       0.11   12.5   0.4       0.84    9.7   0.1    2.1  2  Cro             Cro
       0.12   12.5   0.0        0.4   10.8   0.0    1.7  2  Phage_CI_repr   Bacteriophage CI repressor helix-turn-helix d
       0.14   12.0   0.1        0.6    9.9   0.1    1.9  2  LacI            Bacterial regulatory proteins, lacI family
       0.15   11.9   0.0       0.27   11.0   0.0    1.4  1  HTH_IclR        IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.4   2.3e-14   1.2e-11       3      51 ..      74     122 ..      73     126 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 2.3e-14
                 HHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSE CS
       HTH_3   3 elRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvs 51 
                 ++R  +g+sq+e+AeklG+s+s++s++E  +++P  +t +kla  +g++
  CTQ27004.1  74 AWRILRGMSQQEVAEKLGISQSAVSQLEALDSRPQKRTREKLAAIYGCT 122
                 6899*******************************************97 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.6   5.9e-12   3.2e-09       8      60 ..      74     125 ..      71     128 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 5.9e-12
      HTH_31   8 alReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60 
                 a+R  +G+sq+evAe lg+s+s +s+lE     rp+ ++ e+la ++g ++++
  CTQ27004.1  74 AWRILRGMSQQEVAEKLGISQSAVSQLEALDS-RPQKRTREKLAAIYGCTQEQ 125
                 69999***************************.8**************99887 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   1.3e-09   6.9e-07      16      42 ..      76     102 ..      67     103 .. 0.88
   2 ?    4.4   0.0     0.049        27      20      38 ..     109     127 ..     107     129 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.3e-09
                 HHTTT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4  16 rfgeglTleEIgerlgiSrerVrqiek 42 
                 r ++g++++E++e+lgiS+++V+q+e+
  CTQ27004.1  76 RILRGMSQQEVAEKLGISQSAVSQLEA 102
                 4499*********************95 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.049
                 T--HHHHHHHHTS-HHHHH CS
  Sigma70_r4  20 glTleEIgerlgiSrerVr 38 
                 ++T e +++++g ++e ++
  CTQ27004.1 109 KRTREKLAAIYGCTQEQIS 127
                 689999**********997 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   3.1e-07   0.00017       8      37 ..      71     100 ..      71     103 .. 0.91
   2 ?    4.7   0.0     0.052        28      16      35 ..     108     127 ..      99     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.1e-07
      HTH_23   8 lrillllaeGlsvreIAreLgvsrrTvyrw 37 
                 l++++  ++G+s++e+A++Lg+s++ v++ 
  CTQ27004.1  71 LQAAWRILRGMSQQEVAEKLGISQSAVSQL 100
                 688999999******************975 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.052
      HTH_23  16 eGlsvreIAreLgvsrrTvy 35 
                 ++ ++++ A+++g+++ +++
  CTQ27004.1 108 QKRTREKLAAIYGCTQEQIS 127
                 48899***********9997 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.3e-06    0.0029       8      32 ..      76     100 ..      71     103 .. 0.87
   2 ?    4.9   0.0     0.054        29      12      30 ..     109     127 ..     100     132 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.3e-06
      HTH_28   8 llaaGhsvreaArelgisrrtvyrW 32 
                 ++++G+s+ e+A++lgis++ v+++
  CTQ27004.1  76 RILRGMSQQEVAEKLGISQSAVSQL 100
                 5689******************986 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.054
      HTH_28  12 GhsvreaArelgisrrtvy 30 
                  +++  +A+++g+++++++
  CTQ27004.1 109 KRTREKLAAIYGCTQEQIS 127
                 457888***********96 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.5e-07     8e-05       8      55 ..      76     122 ..      73     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.5e-07
      HTH_19   8 ReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgid 55 
                 R+ +g++q+e+ae+lgis+s  s++E   +  p  ++  k+a ++g +
  CTQ27004.1  76 RILRGMSQQEVAEKLGISQSAVSQLEALDS-RPQKRTREKLAAIYGCT 122
                 889***********************8877.88877777777777765 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   1.6e-05    0.0085      10      28 ..      82     100 ..      71     110 .. 0.87
   2 ?    5.0   0.0     0.041        22      10      26 ..     111     127 ..     103     133 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-05
  YdaS_antitoxin  10 gqkaLAealgvsqqaVsqW 28 
                     +q+++Ae+lg+sq+aVsq+
      CTQ27004.1  82 SQQEVAEKLGISQSAVSQL 100
                     799**************98 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.041
  YdaS_antitoxin  10 gqkaLAealgvsqqaVs 26 
                     ++ +LA   g++q+++s
      CTQ27004.1 111 TREKLAAIYGCTQEQIS 127
                     689************98 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.9e-06    0.0021      25      44 ..      79      98 ..      75     100 .. 0.89
   2 ?    2.0   0.0       0.3   1.6e+02      21      36 ..     115     130 ..     114     132 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.9e-06
                  S---HHHHHHHHT--HHHHH CS
  Sigma70_r4_2 25 eglsykEIAellgisegtVk 44
                   g+s++E+Ae+lgis ++V 
    CTQ27004.1 79 RGMSQQEVAEKLGISQSAVS 98
                  59****************96 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.3
                   HHHTS---HHHHHHHH CS
  Sigma70_r4_2  21 lryleglsykEIAell 36 
                   l ++ g+++++I+ +l
    CTQ27004.1 115 LAAIYGCTQEQISLYL 130
                   77899*******9887 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.75   4.1e+02      25      39 ..      65      79 ..      62      79 .. 0.82
   2 !   19.2   0.1   1.2e-06   0.00067      17      36 ..      80      99 ..      79     100 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.75
      HTH_24 25 erlglSpstvnrrlk 39
                 + ++S+++ +r l+
  CTQ27004.1 65 HKENVSLQAAWRILR 79
                57799*******986 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.2e-06
      HTH_24 17 risqreLAerlglSpstvnr 36
                ++sq+e+Ae+lg+S+s+v++
  CTQ27004.1 80 GMSQQEVAEKLGISQSAVSQ 99
                79****************86 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.3e-06    0.0007       8      57 ..      78     126 ..      75     132 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.3e-06
      HTH_26   8 drgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDL 57 
                  rg++++e+a+++gis++ +s l     +r+   t +k++++ gct +++
  CTQ27004.1  78 LRGMSQQEVAEKLGISQSAVSQLEALD-SRPQKRTREKLAAIYGCTQEQI 126
                 59***********************99.6****************98876 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   2.2e-06    0.0012      30      53 ..      79     102 ..      69     107 .. 0.91
   2 ?   -2.3   0.0       8.2   4.5e+03      33      49 ..     111     127 ..     106     130 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.2e-06
                 CT--HHHHHHHHT--HHHHHHHHT CS
      HTH_37  30 relsqseaaqllgiaqPkvsrllr 53 
                 r+ sq+e+a++lgi+q+ vs+l+ 
  CTQ27004.1  79 RGMSQQEVAEKLGISQSAVSQLEA 102
                 689*******************84 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 8.2
                 -HHHHHHHHT--HHHHH CS
      HTH_37  33 sqseaaqllgiaqPkvs 49 
                 + +++a++ g +q ++s
  CTQ27004.1 111 TREKLAAIYGCTQEQIS 127
                 66788888888886665 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1     8e-06    0.0044       6      34 ..      76     104 ..      71     107 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8e-06
                 HHTTT--HHHHHHHSS--HHHHHHHHCT- CS
      HTH_25   6 RearglsleevaketkIrkdylealEedd 34 
                 R  rg+s +eva+++ I+++ + +lE+ d
  CTQ27004.1  76 RILRGMSQQEVAEKLGISQSAVSQLEALD 104
                 899***********************855 PP

>> KORA  TrfB plasmid transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   9.6e-06    0.0052      20      52 ..      70     101 ..      59     118 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9.6e-06
        KORA  20 tveiargvLVegkkqadvatelgltkqavsqav 52 
                  +++a+++L  g +q++va++lg+++ avsq++
  CTQ27004.1  70 SLQAAWRIL-RGMSQQEVAEKLGISQSAVSQLE 101
                 579999998.899******************86 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0012      0.64      17      40 ..      76      99 ..      60     102 .. 0.80
   2 ?    5.3   0.0     0.036        19      23      39 ..     111     127 ..     100     132 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0012
                EEEEEHHHHHHHHHTTSSHHHHHH CS
   HTH_Crp_2 17 eielpltqeelAsmlGltretvsr 40
                +i   ++q+e A+ lG++++ vs+
  CTQ27004.1 76 RILRGMSQQEVAEKLGISQSAVSQ 99
                453469****************97 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.036
                 HHHHHHHHTTSSHHHHH CS
   HTH_Crp_2  23 tqeelAsmlGltretvs 39 
                 t+e lA++ G t+e++s
  CTQ27004.1 111 TREKLAAIYGCTQEQIS 127
                 99*************98 PP

>> P22_Cro  DNA-binding transcriptional regulator Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       5.9   3.2e+03      27      35 ..      39      46 ..      38      50 .. 0.82
   2 !   14.9   0.1   3.3e-05     0.018      12      29 ..      83     100 ..      82     113 .. 0.84
   3 ?   -2.3   0.0       7.6   4.1e+03      12      27 ..     112     127 ..     110     128 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.9
                HHHHTC--H CS
     P22_Cro 27 sqWgeeiPe 35
                s W e+iP 
  CTQ27004.1 39 SDW-EDIPY 46
                789.***96 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3.3e-05
                 HHHHHHHHTS-HHHHHHH CS
     P22_Cro  12 vekvAkalgvtksAVsqW 29 
                 ++ vA+ lg+++sAVsq 
  CTQ27004.1  83 QQEVAEKLGISQSAVSQL 100
                 789**************6 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 7.6
                 HHHHHHHHTS-HHHHH CS
     P22_Cro  12 vekvAkalgvtksAVs 27 
                  ek+A+  g t++ +s
  CTQ27004.1 112 REKLAAIYGCTQEQIS 127
                 5799999998887665 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   9.6e-05     0.052      22      42 ..      79      99 ..      69     100 .. 0.92
   2 ?   -0.1   0.0       1.5   8.1e+02      21      44 ..     107     130 ..     105     132 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.6e-05
      HTH_10 22 RrvtlkeLAkelGIskstlse 42
                R ++ +e+A++lGIs+s++s+
  CTQ27004.1 79 RGMSQQEVAEKLGISQSAVSQ 99
                677889************997 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.5
      HTH_10  21 PRrvtlkeLAkelGIskstlsehL 44 
                 P + t ++LA + G ++  +s +L
  CTQ27004.1 107 PQKRTREKLAAIYGCTQEQISLYL 130
                 88889999**99999888777666 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   2.7e-05     0.015     144     170 ..      73      99 ..      27     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.7e-05
  Sigma70_ECF 144 velrkleGlsveEiAeklgvskrtver 170
                   + r l G+s +E+Aeklg+s+++v +
   CTQ27004.1  73 AAWRILRGMSQQEVAEKLGISQSAVSQ 99 
                  57899*******************975 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     5e-05     0.027      22      41 ..      81     100 ..      68     102 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5e-05
                 EEHHHHHHHHTSSHHHHHHH CS
      MarR_2  22 ltvgelarrlglsksavsri 41 
                 ++++e+a++lg+s+savs++
  CTQ27004.1  81 MSQQEVAEKLGISQSAVSQL 100
                 89****************96 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   4.7e-05     0.026      10      32 ..      77      99 ..      68     103 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.7e-05
                HHHHSSHHHHHHHHTS-HHHHHH CS
       HTH_1 10 vaeegsftrAAeeLglsqpavsr 32
                + +  s  + Ae+Lg+sq+avs+
  CTQ27004.1 77 ILRGMSQQEVAEKLGISQSAVSQ 99
                6666688899************8 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   6.9e-05     0.037      20      44 ..      73      97 ..      72     100 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.9e-05
  HTH_Tnp_ISL3 20 ilelllesrsvkavArqlgvSwtTV 44
                  ++++ l+++s ++vA+ lg+S + V
    CTQ27004.1 73 AAWRILRGMSQQEVAEKLGISQSAV 97
                  788899999************9988 PP

>> Phage_CII  Bacteriophage CII protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       6.3   3.4e+03      51      65 ..      24      38 ..      20      44 .. 0.77
   2 ?    6.3   0.1      0.02        11      24      42 ..      81      99 ..      66     108 .. 0.87
   3 ?    5.2   0.0     0.046        25      24      42 ..     110     128 ..     102     132 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 6.3
                HHHHHHHTTTTHHHH CS
   Phage_CII 51 asvLlavlefGvadd 65
                + + la+le+  +d+
  CTQ27004.1 24 FRMRLALLEYDDEDE 38
                568899999987776 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.02
                HHHHHHHHHHTSSTTTHHH CS
   Phage_CII 24 lgqrkvaeaiGvdeskisr 42
                ++q++vae +G+ +s +s+
  CTQ27004.1 81 MSQQEVAEKLGISQSAVSQ 99
                5799*************97 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.046
                 HHHHHHHHHHTSSTTTHHH CS
   Phage_CII  24 lgqrkvaeaiGvdeskisr 42 
                 ++++k+a + G+ + +is 
  CTQ27004.1 110 RTREKLAAIYGCTQEQISL 128
                 899**************96 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00017     0.091      14      35 ..      77      98 ..      72     100 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00017
                HCTTS-HHHHHHHHTS-HHHHH CS
        GerE 14 laeGksnkeIAeelniSekTVk 35
                +  G+s +e+Ae+l+iS+  V+
  CTQ27004.1 77 ILRGMSQQEVAEKLGISQSAVS 98
                678**************99986 PP

>> Pou  Pou domain - N-terminal to homeobox domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00073       0.4      17      51 ..      76     104 ..      69     112 .. 0.89
   2 ?    0.2   0.0       1.4   7.4e+02      20      31 ..     119     130 ..     108     133 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00073
         Pou  17 RiklgltQadvglaLgklygkefSqttIcrFEkLd 51 
                 Ri  g++Q++v+++Lg      +Sq++++++E+Ld
  CTQ27004.1  76 RILRGMSQQEVAEKLG------ISQSAVSQLEALD 104
                 8889999999999997......69*********98 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.4
         Pou  20 lgltQadvglaL 31 
                 +g+tQ++++l L
  CTQ27004.1 119 YGCTQEQISLYL 130
                 478888887665 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00023      0.12      26      40 ..      83      97 ..      80      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00023
      HTH_50 26 tRklAkrLGvShtai 40
                   +A++LG+S++a+
  CTQ27004.1 83 QQEVAEKLGISQSAV 97
                5679**********9 PP

>> HNF-1_N  Hepatocyte nuclear factor 1 (HNF-1), N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00019       0.1     153     173 ..      80     100 ..      74     120 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00019
     HNF-1_N 153 rIsQrevvdvTGlsQShlSqw 173
                  +sQ+ev++  G+sQS +Sq 
  CTQ27004.1  80 GMSQQEVAEKLGISQSAVSQL 100
                 58*****************95 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00032      0.18      18      35 ..      81      98 ..      80      99 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00032
  HTH_AsnC-type 18 isyaeLAervGlSestvl 35
                   +s +e+Ae++G+S+s+v 
     CTQ27004.1 81 MSQQEVAEKLGISQSAVS 98
                   6899************96 PP

>> MRP-L20  Mitochondrial ribosomal protein subunit L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00018     0.097      80     124 ..      86     129 ..      58     133 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00018
     MRP-L20  80 kekkyhltkedieeirrLraeDPekwsrkkLakkFgcsklfvsmv 124
                  ++k  ++++ +++++ L  + P+k +r+kLa  +gc++  +s+ 
  CTQ27004.1  86 VAEKLGISQSAVSQLEALD-SRPQKRTREKLAAIYGCTQEQISLY 129
                 4455678999999999996.56*****************999876 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       5.6     3e+03      12      24 ..      60      72 ..      59      74 .. 0.81
   2 ?   11.2   0.0   0.00045      0.24      18      38 ..      78      98 ..      71      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.6
      HTH_38 12 eIerllaeGlslr 24
                ++  +++e+ sl 
  CTQ27004.1 60 VCDVMHKENVSLQ 72
                678899**99986 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00045
      HTH_38 18 aeGlslreIArrLgrspsTIs 38
                 +G+s+ e+A +Lg s s +s
  CTQ27004.1 78 LRGMSQQEVAEKLGISQSAVS 98
                59**************99776 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00042      0.23      20      34 ..      85      99 ..      79     104 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00042
                HHHHHHTS-HHHHHH CS
       HTH_5 20 elaeelglsqstvSh 34
                e ae+lg+sqs+vS+
  CTQ27004.1 85 EVAEKLGISQSAVSQ 99
                889***********7 PP

>> Cro  Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1    0.0015      0.84      14      31 ..      82      99 ..      78     106 .. 0.88
   2 ?    0.7   0.0         1   5.5e+02      15      30 ..     112     127 ..     101     132 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0015
                HHHHHHHHHTS-HHHHHH CS
         Cro 14 GQaktAkdlgvkqsaIsK 31
                 Q+ +A++lg+ qsa+s 
  CTQ27004.1 82 SQQEVAEKLGISQSAVSQ 99
                5999************95 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1
                 HHHHHHHHTS-HHHHH CS
         Cro  15 QaktAkdlgvkqsaIs 30 
                   k A   g++q  Is
  CTQ27004.1 112 REKLAAIYGCTQEQIS 127
                 57889999****9998 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00074       0.4      14      40 ..      82     108 ..      77     112 .. 0.85
   2 ?   -1.6   0.0       5.5     3e+03       4      15 ..     113     124 ..     111     127 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00074
                    SCHHHHCCTT--HHHHHHHHHSSS--H CS
  Phage_CI_repr  14 mqkeLAdlLgiakssvstwvrRdffPg 40 
                    +q+e A+ Lgi++s vs +   d+ P 
     CTQ27004.1  82 SQQEVAEKLGISQSAVSQLEALDSRPQ 108
                    577**************9988888776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 5.5
                    HHHHHHHT-SSC CS
  Phage_CI_repr   4 eRlmsaygvkmq 15 
                    e+l  +yg+ ++
     CTQ27004.1 113 EKLAAIYGCTQE 124
                    688899999876 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.2   1.2e+03      10      22 ..      68      80 ..      62      84 .. 0.56
   2 ?    9.9   0.1    0.0011       0.6       3      37 ..      84     118 ..      82     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.2
                TS-HHHHHHHCTT CS
        LacI 10 GVSkaTVSrvLnn 22
                +VS +++ r+L++
  CTQ27004.1 68 NVSLQAAWRILRG 80
                5666666666654 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0011
                 HHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHH CS
        LacI   3 kDVArlAGVSkaTVSrvLnnkerVseetrerVeaa 37 
                 ++VA++ G S ++VS+    ++r  + tre+ +a+
  CTQ27004.1  84 QEVAEKLGISQSAVSQLEALDSRPQKRTREKLAAI 118
                 79*************98888888888888887776 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00051      0.27      17      38 ..      79     100 ..      77     102 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00051
                 SS-BHHHHHHHHTS-HHHHHHH CS
    HTH_IclR  17 qeltlselArrtglpkStvhRl 38 
                 ++++ +e+A+++g++ S+v+ l
  CTQ27004.1  79 RGMSQQEVAEKLGISQSAVSQL 100
                 5799***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 969.00
//
Query:       CTQ27005.1  [L=100]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-07   29.9   0.0    9.2e-07   29.4   0.0    1.2  1  ParE_toxin  ParE toxin of type II toxin-antitoxin system, par


Domain annotation for each model (and alignments):
>> ParE_toxin  ParE toxin of type II toxin-antitoxin system, parDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   5.1e-11   9.2e-07       1      86 [.       3      80 ..       3      83 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 5.1e-11
                EEEEHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHTTTSEECTSTC....CTTEEEEEECTEEEEEEE.ETSTTEEEEEEEEEH CS
  ParE_toxin  1 vrltprAlkdlkkiadyiardgpaakrfldaleealellaenpalgrprrelg....lkglrririgdyriiYri.ddeelvvvilrvlhr 86
                + ++++A k + ki+           r++++++++le   +   + +     +    +++ +r+r+gdyr+iY++ d ++++ ++++v +r
  CTQ27005.1  3 IVWSKTAAKPFSKIDT----------RYKSRIKSRLEKMDDKASPISDI---KklssPENHYRLRLGDYRVIYTFgDPPGDTCYVVAVKRR 80
                6799999999999965..........66777766666666555554442...2235899****************988888888****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 805.06
//
Query:       CTQ27006.1  [L=23]
Description: hypothetical protein CH1034_150045 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (23 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       106  (0.00591221); expected 358.6 (0.02)
Passed bias filter:                       88  (0.00490825); expected 358.6 (0.02)
Passed Vit filter:                         0  (0); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.23s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 194.74
//
Query:       CTQ27007.1  [L=247]
Description: Uncharacterized oxidoreductase YjgI [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-60  205.1   7.0    1.2e-60  205.0   7.0    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.5e-53  181.2   2.2    1.8e-53  180.9   2.2    1.1  1  adh_short        short chain dehydrogenase
    5.1e-13   49.3   4.0    7.7e-13   48.7   4.0    1.2  1  KR               KR domain
    3.5e-05   23.2   0.1    0.00031   20.1   0.0    2.1  2  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
    5.8e-05   22.6   0.0    0.00018   21.0   0.0    1.7  1  DUF1776          Fungal family of unknown function (DUF1776)
    0.00024   20.7   0.8     0.0008   18.9   0.8    1.8  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0054   17.3   2.6     0.0065   17.0   0.9    2.0  3  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.011   15.4   0.1      0.025   14.3   0.1    1.6  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 
      0.063   13.6   0.9       0.15   12.4   0.9    1.7  1  FAM25            FAM25 family
      0.068   13.1   1.4       0.12   12.2   0.5    1.8  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.0   7.0   6.9e-64   1.2e-60       1     234 []      14     246 ..      14     246 .. 0.95

  Alignments for each domain:
  == domain 1  score: 205.0 bits;  conditional E-value: 6.9e-64
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   Ga +g+GraiA +la++Ga+vv+t+ + ++ +++v++  ++lg+   ++++D ++ ++++++v ++++++g+lDilvnnagia+   gp+++++ ++
    CTQ27007.1  14 GASRGLGRAIALSLARAGADVVITYEKSADkAQAVADEIKALGRYgeAVQADSASAQAIQEAVTHAARSLGGLDILVNNAGIARG--GPLESMTLAD 108
                   999************************999888888888889965558*************************************..********** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSB.STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeggsivnlssvgaerv.vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelle 190
                   +d  ++vn+++++  +++al +m++gg+i+n+ s  a+rv +p+ ++y+++K al+altr lA++lgp+gi+vN v+pgp++ +++    +  e  e
    CTQ27007.1 109 IDALINVNIRGVVIATQEALVHMADGGRIINIGSCLANRVaMPGIAVYAMTKSALNALTRGLARDLGPRGITVNLVHPGPTNSDMNP---EDGEQAE 202
                   ********************************888776665*****************************************99975...4568889 PP

                   HHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 191 elearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   + ++++ +g+ g+pe++a+a+ fLas++a  i+G+ l vDgGl+
    CTQ27007.1 203 AQRQMIAVGHYGQPEDIAAAVTFLASPAAGQISGTGLDVDGGLN 246
                   999***************************************86 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.9   2.2     1e-56   1.8e-53       1     193 [.       8     200 ..       8     202 .. 0.97

  Alignments for each domain:
  == domain 1  score: 180.9 bits;  conditional E-value: 1e-56
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 k +lvtGas+G+Graia  la++Ga+vv+ +++s++k+++va+e+k++g+   a+q+D +++++++++v +a+  lg+ld+LvnNAGi++ gp ++++ 
  CTQ27007.1   8 KKALVTGASRGLGRAIALSLARAGADVVItYEKSADKAQAVADEIKALGRYGEAVQADSASAQAIQEAVTHAARSLGGLDILVNNAGIARGGPLESMTL 106
                 689**************************9********************************************************************* PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG.TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvag.kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelrek 193
                 ++++++i+vN+ gv+ +t+++l +m    +GrI+n++S  + +v+++g a+Y+ +K a+++ltr la++l p+gi+vn v+PG++++dm+ e  e+
  CTQ27007.1 107 ADIDALINVNIRGVVIATQEALVHMA--DGGRIINIGSCLAnRVAMPGIAVYAMTKSALNALTRGLARDLGPRGITVNLVHPGPTNSDMNPEDGEQ 200
                 ************************98..99********98879**********************************************9887765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   4.0   4.3e-16   7.7e-13       4     175 ..      11     183 ..       9     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 4.3e-16
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 l+tG+  gLG+++a  la+ ga  ++   +sa   ++++a  +e++alg   e+v+aD ++++a++++++++ ++ + +   ++ Ag++r ++le+mt 
  CTQ27007.1  11 LVTGASRGLGRAIALSLARAGADVVITYEKSA---DKAQAVADEIKALGRYGEAVQADSASAQAIQEAVTHAARSLGGLDILVNNAGIARGGPLESMTL 106
                 9**********************999999994...455667888888888889999******************************************* PP

                 HHHHHHHTTTTHHHHHHHH.HTTT.S--S.EEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHH.HHHHHTEEEEEE CS
          KR 103 edleqvlapKvkGawnLhe.lled.esld.ffvlfSSiagllgsagqanYaaaNaflDalaeyr.rsqglpavsinw 175
                 +d++++++  ++G+    + +l +  +   ++ + S +a+ + ++g a Ya + + l+al +   r++g +++++n+
  CTQ27007.1 107 ADIDALINVNIRGVVIATQeALVHmADGGrIINIGSCLANRVAMPGIAVYAMTKSALNALTRGLaRDLGPRGITVNL 183
                 *************9876541444444444155555666889*******************98651455666777665 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.7e-07   0.00031      31      77 ..       2      48 ..       1      72 [. 0.88
   2 ?    1.1   0.0      0.12   2.2e+02      17      62 ..      66     112 ..      55     133 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.7e-07
                   T---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHH CS
  THF_DHG_CYH_C 31 gielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeit 77
                   +i+l+gkk++v G+s+ +g+++al L++++a V ++ +k+ d a+ +
     CTQ27007.1  2 QIDLTGKKALVTGASRGLGRAIALSLARAGADVVITYEKSADKAQAV 48
                   799*********************************99998877665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.12
                    -HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHCT.T-E CS
  THF_DHG_CYH_C  17 pctpkgvvellketgielegkkvvvvGrsnivgkplallLlek.nat 62 
                    ++ ++++ e ++++  +l g +++v +++   g pl+ + l++ +a 
     CTQ27007.1  66 SASAQAIQEAVTHAARSLGGLDILVNNAGIARGGPLESMTLADiDAL 112
                    67889999999999999999999999999999999988866654444 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     1e-07   0.00018      17     198 ..      20     187 ..      11     211 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1e-07
     DUF1776  17 tRsialDLerrGFiVfvtvesaeeeklvesedredIrplsvdd...dpssieasleefaqslesphvalpgakphvl.rLkgv.ilvPslsy.ptgpie 109
                  R+ial L r G  V++t e+++++++  ++   +I++l       +++s++a+   +++              h+   L g+ ilv +      gp+e
  CTQ27007.1  20 GRAIALSLARAGADVVITYEKSADKAQAVAD---EIKALGRYGeavQADSASAQ--AIQEA-----------VTHAArSLGGLdILVNNAGIaRGGPLE 102
                 5788888888888888888777766655555...35555544411122222222..22222...........22222057776688888888789**** PP

     DUF1776 110 tiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLG 198
                  ++l+ +  ++n ++   ++++q+ l +++    +  +ii +   + + + +p  a+ a++ sal+al++ L+r+l+p +i v  ++ G
  CTQ27007.1 103 SMTLADIDALINVNIRGVVIATQEALVHMA----DGGRIINIGSCLANRVAMPGIAVYAMTKSALNALTRGLARDLGPRGITVNLVHPG 187
                 *************************99*99....589**********************************************988876 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.8   4.5e-07    0.0008       1     171 [.      10     185 ..      10     221 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.5e-07
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHH.....T-SEEEE--S..---HHHHHH..S CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkee.....qpdavihlAa..vggvaasse..d 83 
                 +lVtGa+  +G+a++  l+++g +v+    +s ++++a  +++       e v++d   ++a+++++        + d+ ++ A+   gg+ +s++  d
  CTQ27007.1  10 ALVTGASRGLGRAIALSLARAGADVVITYEKSADKAQAVADEIkalgrygEAVQADSASAQAIQEAVTHAarslgGLDILVNNAGiaRGGPLESMTlaD 108
                 59**********************99999998888888888879******99****9999988887765321114689999998876677777776225 PP

                 HHHHHHHHTHHHHHHHHHHHHHTCT..EEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESE CS
   Epimerase  84 padfieknlqgtlnlleaarkagvk..rllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfn 171
                   ++i+ n++g++   ++a  + ++  r+++++S ++  ++a             +    Ya++K a   l++ +a++ g + i+++l +
  CTQ27007.1 109 IDALINVNIRGVVIATQEALVHMADggRIINIGS-CLANRVAM------------PGIAVYAMTKSALNALTRGLARDLGPRGITVNLVH 185
                 5678888888888888888877555569999999.66665555............33566777777777777777777766666666655 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.9   3.6e-06    0.0065      10      52 ..      19      66 ..      16      81 .. 0.78
   2 ?   -2.6   0.0         5   8.9e+03       9      29 ..     139     156 ..     139     181 .. 0.63
   3 ?   -3.1   0.0       7.1   1.3e+04      42      59 ..     204     220 ..     195     230 .. 0.47

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.6e-06
                   HHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC........-EEEC CS
  F420_oxidored 10 mgealasgllaagaqpheivvansrnpekaeelaeelg........vkvta 52
                   +g+a+a+ l++ag    ++v++ +++ +ka++ a+e++        v++ +
     CTQ27007.1 19 LGRAIALSLARAG---ADVVITYEKSADKAQAVADEIKalgrygeaVQADS 66
                   69***********...********************986666665533333 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5
                    HHHHHHHHHHHHTTS-GGCEE CS
  F420_oxidored   9 nmgealasgllaagaqpheiv 29 
                    n+g+ la++++  g     ++
     CTQ27007.1 139 NIGSCLANRVAMPG---IAVY 156
                    57777777777766...4444 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 7.1
                    HHHHHC-EEECECHHHHH CS
  F420_oxidored  42 laeelgvkvtavdneeaa 59 
                     ++ + v+  + + e+ a
     CTQ27007.1 204 QRQMIAVGHYG-QPEDIA 220
                    44444433333.333333 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   1.4e-05     0.025      40      78 ..       7      43 ..       1      44 [. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
                     -SEEEEESTSSHHHHHHHHHHHHSS--EEEEEE------ CS
  Eno-Rase_NADH_b 40 pkkvLviGaStGYGLAsriaaafgagadtigVsfekeas 78
                      kk+Lv GaS G G A  +++a++ gad + + +ek+a+
       CTQ27007.1  7 GKKALVTGASRGLGRAIALSLARA-GAD-VVITYEKSAD 43
                     59************9999999988.776.6699999875 PP

>> FAM25  FAM25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.9   8.5e-05      0.15      22      64 ..      46      86 ..      32      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.5e-05
       FAM25 22 KAiadalKkAqesgekvvKevtekvtntvtnavtHAaEgLgkl 64
                +A+ad +K+    ge v  +      +++ +avtHAa +Lg l
  CTQ27007.1 46 QAVADEIKALGRYGEAVQAD--SASAQAIQEAVTHAARSLGGL 86
                699***********999888..66789*************965 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   6.8e-05      0.12      10      68 ..      19      77 ..      10      91 .. 0.72
   2 ?   -2.2   0.0       1.8   3.2e+03      10      32 ..     140     162 ..     139     174 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.8e-05
                CHHHHHHHHHHTT-EEEEE.-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEE CS
     3HCDH_N 10 mGagiaavfasagleVvlv.diseealekalekieksleklvekgklkeeeveaalaris 68
                +G+ ia  +a+ag +Vv++ + s++++++++++i++ l +  e+ +++ ++++a+ + ++
  CTQ27007.1 19 LGRAIALSLARAGADVVITyEKSADKAQAVADEIKA-LGRYGEAVQADSASAQAIQEAVT 77
                79*************998615577788888888886.55555555555555555555544 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.8
                 CHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  10 mGagiaavfasagleVvlvdise 32 
                 +G+ +a+ +a  g+ V  +  s+
  CTQ27007.1 140 IGSCLANRVAMPGIAVYAMTKSA 162
                 78999999999999998776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 2033.25
//
Query:       CTQ27008.1  [L=362]
Description: putative oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-46  156.6   0.3    8.5e-46  156.4   0.3    1.0  1  Fe-ADH        Iron-containing alcohol dehydrogenase
    2.2e-15   57.0   0.0    3.1e-15   56.6   0.0    1.2  1  Fe-ADH_2      Iron-containing alcohol dehydrogenase
      0.002   17.3   2.2          1    8.4   0.0    2.4  2  DHQ_synthase  3-dehydroquinate synthase
  ------ inclusion threshold ------
      0.083   12.6   0.0       0.12   12.1   0.0    1.3  1  GlutR_N       Glutamyl-tRNAGlu reductase, N-terminal domain


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   0.3   1.9e-49   8.5e-46       1     362 [.      12     348 ..      12     350 .. 0.85

  Alignments for each domain:
  == domain 1  score: 156.4 bits;  conditional E-value: 1.9e-49
                 -SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHH CS
      Fe-ADH   1 PtrivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKa 99 
                 P +++ ++g+le+l + +++ +++ra+ v+++++l+ ++ +  +  +l ea+  +     +++++++++v+ ++++  + +  vvi+vGGG ++D AK+
  CTQ27008.1  12 PANYFSHPGSLERLSDFFSADQLSRAVWVYGERALAGAEPFLPAAFHLPEAKKIL-----FTGHCSERDVAGLVQASGDDR-AVVIGVGGGALLDSAKV 104
                 7899*****************************9977777766666664333322.....3699**********9777765.8**************** PP

                 HHHHTT..................--EEEEESS-S-S-TT-SEEEEE.-TTS.EEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHH CS
      Fe-ADH 100 ialllanpevedylgegkakkkkalpliaiPTtaGtGsevtplavitdeeeg.eklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEayv 197
                 +a  l+                  +pl+aiPT+a+t++ +tpl+v + ++ +   +++fd+  +  l++v p+++l++P++++ a+++D+la+++Ea v
  CTQ27008.1 105 LARRLG------------------VPLVAIPTIAATCAAWTPLSVWYSDAGQaLNFELFDDANF--LVLVEPRIILNAPAEYLLAGIGDTLAKWYEAVV 183
                 ******..................***********************66665588899999999..*******************************99 PP

                 H.H..T---TTSSB--HHHHHHH....HHHHHHHHHHH..HH......HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHH CS
      Fe-ADH 198 s.k..kanplsdalaleairlia....knleravadge..dl......eareqmllastlaglafsnaglgavHalahalgalfgiphglanaillpav 281
                   +  +a pl+ +l   +++ i+     + e+a+ad++  dl         + ++ + +++gl+  +++++a+Ha++++l+  +  + +++++ +++++
  CTQ27008.1 184 LaPqpEALPLTVRLGINGAQAIRdvllASSETALADQRrgDLtqafrdVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTV-LPQTDKFLHGTKVAYG 281
                 855676777777755555555540000455666666554455888886777777777888**********************.8888************ PP

                 H..........HHHHHHT.......T--HHHHHHHHHHHHHTT---SHHHHT-TT-...HHHHHHHHHT-T.SGGGGSSS---HH CS
      Fe-ADH 282 lrfnaeaaperlaqlaralggesdeeaaeeliealrellkelglptsLselgvdee...dldklaeaalkd.rslannpreltae 362
                 +          l+q a          ++++++++l + +++++lpt+L++l vd +   +ld++++++l++ +s++  p+ lt+e
  CTQ27008.1 282 I----------LVQSALL--------GQDDVLAQLVQAYQRFNLPTTLAALEVDINnraELDRVIAHTLRPgESIHYLPVTLTPE 348
                 *..........9999999........89**********************99887556799*********************987 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0     7e-19   3.1e-15       4     249 ..      19     278 ..      17     279 .. 0.70

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 7e-19
    Fe-ADH_2   4 egaleklgellkelelkkvllvadentkkaagekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsaklnvpy 102
                 +g le+l+++++  +l++++ v++e   + a+  +  +++  +   + +  ++++ ++ +v+ lv+a   ++  +v++vGgG ++D ak+++ +l+vp+
  CTQ27008.1  19 PGSLERLSDFFSADQLSRAVWVYGERALAGAEPFLPAAFHLPEA--KKIL-FTGHCSERDVAGLVQASG-DDRAVVIGVGGGALLDSAKVLARRLGVPL 113
                 56677777777777777777777777666666666666655543..3332.457788888888887776.7888************************* PP

    Fe-ADH_2 103 vsvpTaaSvDGfaspgaslvvd.gkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkytala.....dwklan......evseplaklsaam 188
                 v++pT a+      p +  + d g+   +     a + v++   ++ +AP++ l++G+GD l+k+   +          +      ++    a+++ + 
  CTQ27008.1 114 VAIPTIAATCAAWTPLSVWYSDaGQALNFeLFDDANFLVLVEPRIILNAPAEYLLAGIGDTLAKWYEAVvlapqP----EalpltvRLGINGAQAIRDV 208
                 *****999888888888888888988888777899*****************************98555243330....23434334455556666666 PP

    Fe-ADH_2 189 vqeaaeklvedkke...tealeelleal.....alsgigisrpaSGsEHliSHaldmlal.kqalHGeqV 249
                 +  + e++++d+++   t+a + +++a+     +++g+g   +   + H +   l  l +  + lHG++V
  CTQ27008.1 209 LLASSETALADQRRgdlTQAFRDVVDAIiagggMVGGLGERYTRVAAAHAVHNGLTVLPQtDKFLHGTKV 278
                 6666666666555433366666677666444446666666666666666666666666333577888888 PP

>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.5   0.00031       1.4      23      64 ..      79     118 ..      69     125 .. 0.84
   2 !    8.4   0.0   0.00023         1     192     245 ..     266     314 ..     253     331 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00031
                   HHHTT--TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE- CS
  DHQ_synthase  23 lleakleRksllialGGGvvgDlaGfvAatylRGvrfvqvPt 64 
                   l++a+ + ++++i +GGG+++D a   A     Gv +v +Pt
    CTQ27008.1  79 LVQASGDDRAVVIGVGGGALLDSAKVLARR--LGVPLVAIPT 118
                   6677778889************99988864..49******99 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00023
                   HHTTTTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT CS
  DHQ_synthase 192 llgyekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkel 245
                   l +++k+lHG+ Va+G++++  l  +  +     +++l++  ++++lp++l  l
    CTQ27008.1 266 LPQTDKFLHGTKVAYGILVQSALLGQDDV-----LAQLVQAYQRFNLPTTLAAL 314
                   334589************99988755544.....57899999999999988776 PP

>> GlutR_N  Glutamyl-tRNAGlu reductase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.7e-05      0.12      71     118 ..     256     305 ..     212     335 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.7e-05
     GlutR_N  71 leelkeklyvlegeeavrHlfrVasGL..dSlvlGEdqIlgQvkeayela 118
                  + +++ l+vl +++ + H  +Va G+  +S+ lG d++l Q+ +ay+  
  CTQ27008.1 256 AHAVHNGLTVLPQTDKFLHGTKVAYGIlvQSALLGQDDVLAQLVQAYQRF 305
                 4456678899999999**********7669*****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2721.26
//
Query:       CTQ27009.1  [L=500]
Description: putative ribose/galactose/methyl galactoside import ATP-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-43  147.5   0.0    3.5e-22   79.4   0.0    2.2  2  ABC_tran         ABC transporter
    4.4e-06   26.7   1.0      0.071   12.9   0.0    3.7  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    5.3e-06   26.1   0.4    9.7e-05   22.0   0.1    2.4  2  AAA_29           P-loop containing region of AAA domain
    6.9e-06   25.6   0.7       0.27   10.7   0.0    3.2  3  SMC_N            RecF/RecN/SMC N terminal domain
      1e-05   25.5   1.2      0.012   15.6   0.1    2.6  3  RsgA_GTPase      RsgA GTPase
    3.1e-05   24.0   0.1      0.042   13.9   0.0    2.4  2  MMR_HSR1         50S ribosome-binding GTPase
    3.1e-05   24.3   3.6       0.42   10.9   2.3    3.3  2  AAA_22           AAA domain
    4.7e-05   23.2   3.5      0.017   14.9   0.5    3.3  3  AAA_30           AAA domain
    7.5e-05   23.3   0.1    0.00072   20.1   0.0    2.0  2  AAA_23           AAA domain
    0.00029   21.4   0.8       0.16   12.6   0.0    2.7  2  AAA_18           AAA domain
      0.002   18.5   2.6        2.1    8.7   0.7    2.8  2  AAA_16           AAA ATPase domain
      0.002   17.7   0.4       0.37   10.4   0.0    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0024   17.5   1.1       0.05   13.2   0.6    2.5  2  AAA_25           AAA domain
     0.0079   16.4   1.3       0.68   10.1   0.1    2.8  2  AAA_33           AAA domain
  ------ inclusion threshold ------
      0.012   15.6   1.3          3    7.9   0.1    2.3  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.017   14.4   0.6        2.2    7.5   0.1    2.4  2  Zeta_toxin       Zeta toxin
      0.023   13.7   0.3        4.6    6.1   0.0    2.2  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.026   14.4   0.2        1.9    8.4   0.0    2.7  2  NACHT            NACHT domain
      0.036   13.9   0.2      0.067   13.0   0.2    1.3  1  MukB             MukB N-terminal
      0.046   12.9   0.2        5.1    6.2   0.0    2.4  2  NB-ARC           NB-ARC domain
      0.046   13.5   0.1        4.2    7.1   0.0    2.4  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.064   12.8   0.1       0.15   11.7   0.1    1.5  1  AAA_27           AAA domain
      0.087   13.1   0.9       0.89    9.8   0.0    2.7  3  SbcCD_C          Putative exonuclease SbcCD, C subunit
      0.096   12.0   0.4        1.5    8.1   0.1    2.5  3  DnaB_C           DnaB-like helicase C terminal domain
       0.11   12.5   0.2         15    5.6   0.0    3.0  3  AAA_14           AAA domain
       0.11   12.7   2.1        1.3    9.2   0.1    2.8  3  AAA_28           AAA domain
        0.2   12.1   0.0        5.6    7.4   0.0    2.3  2  RNA_helicase     RNA helicase
       0.24   11.1   0.3         11    5.7   0.0    3.0  4  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.29   10.9   0.9        7.1    6.3   0.1    2.2  2  ATP_bind_1       Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0   5.7e-25   3.5e-22       1     137 []      21     172 ..      21     172 .. 0.91
   2 !   66.2   0.0   6.8e-21   4.2e-18       1     136 [.     272     426 ..     272     427 .. 0.88

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 5.7e-25
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS..--S-TTSBHHHH..............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx..xxxxxxxxxxxx..............xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe..pqlfpeltvren..............esd 82 
                 l++v+++l+ g+++a++G nGaGKStL+++l+g +   eGe+++++ +++   ++   +  i  ++qe    l p+l+++en              +s+
  CTQ27009.1  21 LNKVDFTLHGGSVHALTGANGAGKSTLMAVLCGTHAHYEGEVTINNLPVTIrSPRDAKQLGIHLVQQEvdVALVPGLSIAENimldrlaepgmtfrWSR 119
                 789**********************************************9977888888899999999999**************99999999988555 PP

                 TC..HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 ee..iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++  + +al++l+   +  + +     s    +kq + laral  + ++l+lDEpta
  CTQ27009.1 120 VRqlAREALAQLDVALDVRRSI----DSCTLAEKQQILLARALSHHCRFLILDEPTA 172
                 5566889999999888777777....999999***********************97 PP

  == domain 2  score: 66.2 bits;  conditional E-value: 6.8e-21
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................. 79 
                 l+++sl l++ge+++i G  GaGK+ L+k+l g +k   + Ge+  +g++++  ++  s+ + ++ +p+e + ++++ ++e                  
  CTQ27009.1 272 LQDISLRLRKGEILGIAGLAGAGKTELCKALFGASKSrvQRGEL--NGQPWRPrDPADSVGRGLALVPEE-RRKEGIFIEEPiamnlavsadnsfsrws 367
                 789******************************99995566665..*****99899999**********9.455555466667777*******9***99 PP

                 .....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                      ++ +++e+++++lg      t  ++  + LSgG +q+va+ + l  ++++l++DEpt
  CTQ27009.1 368 lfghrQAWRWAEEVIARLGVRA---TGPGQTLRRLSGGNQQKVAIGKWLRGDANVLIFDEPT 426
                 9999888889*********766...6666667*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00011     0.071       2      19 ..      34      51 ..      33      79 .. 0.86
   2 ?    4.3   1.2     0.048        30     259     297 ..     163     201 ..     149     206 .. 0.85
   3 ?   -1.0   0.0         2   1.3e+03       3      24 ..     286     307 ..     284     330 .. 0.71
   4 ?    3.8   0.0     0.068        42     233     291 ..     395     450 ..     378     455 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
      AAA_21  2 nvliGpNgsGKSnLLdal 19
                 +l+G+Ng+GKS+L+  l
  CTQ27009.1 34 HALTGANGAGKSTLMAVL 51
                68************9877 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.048
      AAA_21 259 sllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 ++l++DEp + L+ +  +rl+ ++++l+  g+ v++ +H
  CTQ27009.1 163 RFLILDEPTAPLDQHESERLFAVVRRLQHQGIGVVFISH 201
                 89**********************999999********* PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2
      AAA_21   3 vliGpNgsGKSnLLdaldllar 24 
                 ++ G  g+GK+ L +al +++ 
  CTQ27009.1 286 GIAGLAGAGKTELCKALFGASK 307
                 5677779**********87764 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.068
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQ 291
                 ++r lS G ++  a+  +l  ++    +l++DEp  g + k+ + l+ l++ l+r+g  
  CTQ27009.1 395 TLRRLSGGNQQKVAIGKWLRGDA---NVLIFDEPTKGVDVKAKTDLFMLIDGLAREGKG 450
                 56778888888888888898888...89***********99999998777655555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   1.6e-07   9.7e-05      12      50 ..      18      55 ..      11      59 .. 0.80
   2 ?    1.4   0.0      0.44   2.7e+02      18      39 ..     278     299 ..     267     305 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.6e-07
      AAA_29 12 fdg.htieidlkg..atlltGpsGsGKSTllDAiqalLvpak 50
                f+  ++++++l+g  ++ ltG++G+GKSTl+    a+L++++
  CTQ27009.1 18 FQAlNKVDFTLHGgsVHALTGANGAGKSTLM----AVLCGTH 55
                5666677777777789**************9....7777666 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.44
      AAA_29  18 eidlkg.atlltGpsGsGKSTll 39 
                 +++ kg +  ++G  G+GK+ l 
  CTQ27009.1 278 RLR-KGeILGIAGLAGAGKTELC 299
                 444.3447789********9775 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00043      0.27       6      44 ..      14      51 ..      11      58 .. 0.74
   2 !    8.4   0.0    0.0022       1.4     151     204 ..     154     208 ..     146     220 .. 0.79
   3 ?    3.2   0.0     0.083        51      26      53 ..     284     308 ..     273     316 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00043
                EEESETTEECEEEEEETT.SSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  6 eienFksyagktvilpfs.ksftaivGpNGSGKsnlldAi 44
                  ++F+ ++  +v+  ++  s+ a++G+NG+GKs l+  +
  CTQ27009.1 14 AFSGFQALN--KVDFTLHgGSVHALTGANGAGKSTLMAVL 51
                567788884..455544414699************99755 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0022
                 HHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
       SMC_N 151 fAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlek 204
                 +A    +   + +lDe  a LD+++ +++  ++++ +++   ++ is+r + l+ 
  CTQ27009.1 154 LARALSHHCRFLILDEPTAPLDQHESERLFAVVRRLQHQgIGVVFISHRIHELKA 208
                 555555556699**********************988776888889998776665 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.083
                 EEEEEESTTSSHHHHHHHHHHHCTT.TT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersa 53 
                 +  i G  G+GK+ l+ A+   +G +++
  CTQ27009.1 284 ILGIAGLAGAGKTELCKAL---FGASKS 308
                 55799*************9...665555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.9e-05     0.012      87     130 ..      18      62 ..       2      67 .. 0.80
   2 ?   -2.4   0.0       6.4     4e+03      60      85 ..     178     202 ..     118     216 .. 0.58
   3 !    8.0   0.1    0.0039       2.4      87     128 ..     269     311 ..     258     317 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.9e-05
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                   ++l+++   l++ ++ +l G  G+GKStL+ +l +++    gev
   CTQ27009.1  18 FQALNKVDFTLHGgSVHALTGANGAGKSTLMAVLCGTHAHYEGEV 62 
                  467889999999999*******************99877666665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.4
                  -HHHHHHHHHHHHHHTTSEEEE--TT CS
  RsgA_GTPase  60 eeeeeleelkeelealgyevllvsak 85 
                  e+e +l ++  +l++ g+ v+++s +
   CTQ27009.1 178 ESE-RLFAVVRRLQHQGIGVVFISHR 202
                  222.4666677777777777777665 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0039
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpelelktg 128
                  ++ l++++ +l++ ++  ++G  G+GK+ L +al +  + +++
   CTQ27009.1 269 EALLQDISLRLRKgEILGIAGLAGAGKTELCKALFGASKSRVQ 311
                  56678888888888999******************99888876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   6.8e-05     0.042       3      56 ..      35      97 ..      33     165 .. 0.62
   2 !    7.7   0.1    0.0057       3.5       3      27 ..     286     311 ..     284     317 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.8e-05
                EEEESTTSSHHHHHHHHHT.....S.TEEESSSTTSSSSEEEEE...EEETTEEEEEEECGGC CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg.....e.kaivsdkpgtTrdinegr...vklkgkeielvDtpGl 56
                a+ G   +GKStL+  l+g     e ++ +++ p t r ++ ++   ++l ++e+ ++ +pGl
  CTQ27009.1 35 ALTGANGAGKSTLMAVLCGthahyEgEVTINNLPVTIRSPRDAKqlgIHLVQQEVDVALVPGL 97
                789***************955443246777888888888866653332233467777777885 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0057
                 EEEESTTSSHHHHHHHHHTS.TEEES CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.kaivs 27 
                 +i+G   +GK+ L +al+g+ k++v+
  CTQ27009.1 286 GIAGLAGAGKTELCKALFGAsKSRVQ 311
                 89*****************8778875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   2.3   0.00068      0.42       6     128 ..      32     199 ..      28     206 .. 0.66
   2 !    8.4   0.0     0.004       2.5       5      28 ..     282     305 ..     278     349 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00068
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee......erpevvfvtlpsstsskdl.lrellralglelka........................... 70 
                 ++ ++tG  G+GK+tl++ l  ++  + +                vt+ s+ + k+l  + + +++++ l                             
  CTQ27009.1  32 SVHALTGANGAGKSTLMAVLCGTHAHY-E--GevtinnL-----PVTIRSPRDAKQLgIHLVQQEVDVALVPglsiaenimldrlaepgmtfrwsrvrq 122
                 66789***************9998332.2..12234440.....5555555555555555555555555555555555555555555555555555555 PP

      AAA_22  71 ..............erlsseell.ealeqalrarav...ielliiDEaqh.lr..seealeeLrsllnlsrkgvqliLv 128
                                r s + +  +  +q l ara     ++li+DE    l+  + e l  ++++l   ++g+ ++++
  CTQ27009.1 123 larealaqldvaldVRRSIDSCTlAEKQQILLARALshhCRFLILDEPTApLDqhESERLFAVVRRLQ--HQGIGVVFI 199
                 55555555555555588999999899999999999999999999999999897643555555566666..688888776 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.004
      AAA_22   5 agilvvtGesGtGKTtllrrlleq 28 
                   il + G +G+GKT l++ l+  
  CTQ27009.1 282 GEILGIAGLAGAGKTELCKALFGA 305
                 5677899************99865 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.5   2.7e-05     0.017      15      50 ..      28      63 ..      19     200 .. 0.80
   2 !    6.8   0.1     0.008       4.9      20      41 ..     284     305 ..     275     314 .. 0.80
   3 ?   -1.5   0.0       2.8   1.7e+03      64      97 ..     383     425 ..     366     448 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.7e-05
      AAA_30 15 tsgdrvavltGpAGtGKttalkalreaweaaggrvi 50
                 +g  v++ltG+ G+GK+t++++l  ++++ +g+v 
  CTQ27009.1 28 LHGGSVHALTGANGAGKSTLMAVLCGTHAHYEGEVT 63
                445579******************988888854543 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.008
      AAA_30  20 vavltGpAGtGKttalkalrea 41 
                 +  + G AG+GKt + kal  a
  CTQ27009.1 284 ILGIAGLAGAGKTELCKALFGA 305
                 77899**********9998655 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.8
      AAA_30  64 eelgi....eastiakllkrlk.....grarlepgtllivDEa 97 
                 + lg+    +++t+ +l   ++     g++   ++++li DE 
  CTQ27009.1 383 ARLGVratgPGQTLRRLSGGNQqkvaiGKWLRGDANVLIFDEP 425
                 4444422226667777776666888875555566688888885 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.2e-06   0.00072       2      40 ..      13      52 ..      12      62 .. 0.85
   2 ?    0.7   0.0       1.1   6.5e+02      20      40 ..     283     303 ..     271     319 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.2e-06
      AAA_23  2 LkienfrsfrdqeidF.skgltlItGpNGaGKTTildAik 40
                L  ++f+ ++++++ + +  + ++tG NGaGK+T++  ++
  CTQ27009.1 13 LAFSGFQALNKVDFTLhGGSVHALTGANGAGKSTLMAVLC 52
                5667888888888888666899**************9887 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.1
      AAA_23  20 gltlItGpNGaGKTTildAik 40 
                  +  I G  GaGKT +  A+ 
  CTQ27009.1 283 EILGIAGLAGAGKTELCKALF 303
                 567899********9888876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.2     0.016       9.6       3      18 ..      36      51 ..      35     181 .. 0.75
   2 !   12.6   0.0   0.00025      0.16       2      19 ..     286     306 ..     285     333 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.016
      AAA_18  3 ltGtpGvGKttlakeL 18
                ltG+ G+GK+tl   L
  CTQ27009.1 36 LTGANGAGKSTLMAVL 51
                8***********9888 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00025
      AAA_18   2 lltGtpGvGKttlakeL...s 19 
                 +++G +G+GKt+l+k+L   s
  CTQ27009.1 286 GIAGLAGAGKTELCKALfgaS 306
                 599**************6643 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.7    0.0035       2.1      25     107 ..      32     170 ..      19     199 .. 0.46
   2 !    8.6   0.0    0.0036       2.2      18      50 ..     278     308 ..     263     335 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0035
      AAA_16  25 elvllsGesGvGKsslvrell.ralekd.....................ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekl 101
                 ++  l+G+ G GKs+l+  l  +++  +                     g+++++++ d      ++++ ++++ ++  l  l+++  +  +++ r+  
  CTQ27009.1  32 SVHALTGANGAGKSTLMAVLCgTHAHYEgevtinnlpvtirsprdakqlGIHLVQQEVDV-----ALVPGLSIA-ENIMLDRLAEPGMTFRWSRVRQLA 124
                 56679************8777344444433444433333333332222222222222222.....233333333.223333333334444444444444 PP

      AAA_16 102 eeala........................................a 107
                 +eala                                        +
  CTQ27009.1 125 REALAqldvaldvrrsidsctlaekqqillaralshhcrflildeP 170
                 4444455443334443333333444444444444444444444444 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0036
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralek 50 
                 r+r+g  e++ + G +G GK+ l ++l+ a + 
  CTQ27009.1 278 RLRKG--EILGIAGLAGAGKTELCKALFGASKS 308
                 66666..7999****************954443 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0006      0.37       2      36 ..      33      67 ..      32      77 .. 0.87
   2 ?    5.3   0.1     0.021        13       3      21 ..     285     303 ..     283     313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0006
                EEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS- CS
        cobW  2 vtvltGflGsGKTtLlnhllenraglklavivNef 36
                v  ltG  G+GK+tL+  l+  +a+++  v +N++
  CTQ27009.1 33 VHALTGANGAGKSTLMAVLCGTHAHYEGEVTINNL 67
                6789****************988999888888865 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.021
                 EEEEESTTCCHHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhll 21 
                 ++++G  G+GKT L ++l 
  CTQ27009.1 285 LGIAGLAGAGKTELCKALF 303
                 7899**********99887 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.6   8.1e-05      0.05      31      61 ..      29      61 ..      23     168 .. 0.83
   2 ?    2.1   0.0       0.2   1.2e+02      30      53 ..     279     302 ..     269     343 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.1e-05
      AAA_25 31 pagelallaGapgtGKttlaldlalava..tGk 61
                  g++++l+Ga g+GK+tl   l+ + a  +G+
  CTQ27009.1 29 HGGSVHALTGANGAGKSTLMAVLCGTHAhyEGE 61
                6799*****************999888855444 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.2
      AAA_25  30 lpagelallaGapgtGKttlaldl 53 
                 l++ge+  +aG  g+GKt l+  l
  CTQ27009.1 279 LRKGEILGIAGLAGAGKTELCKAL 302
                 67899999**********997655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1    0.0011      0.68       3      96 ..      35     190 ..      33     205 .. 0.58
   2 ?    4.1   0.2     0.077        48       5      21 ..     288     304 ..     284     313 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0011
      AAA_33   3 llvGlpGsGKstlaerllkklg...........avllssdt................................................lrrrlfgtdq 42 
                  l G++G+GKstl   l+  ++            v+++s+                                                 +r++l+  d+
  CTQ27009.1  35 ALTGANGAGKSTLMAVLCGTHAhyegevtinnlPVTIRSPRdakqlgihlvqqevdvalvpglsiaenimldrlaepgmtfrwsrvrqlAREALAQLDV 133
                 678**************9888776655555555555555557777777777777777777777777777666666666666655555544444444222 PP

      AAA_33  43 q.sktdytrvldrlyqilnelarkalsagrn.vildat..nlsrrerarflklarrlg 96 
                   + +++++  + + +++  l+++als+ +  +ild +   l+++e +r+++++rrl 
  CTQ27009.1 134 AlDVRRSIDSCTLAEKQQ-ILLARALSHHCRfLILDEPtaPLDQHESERLFAVVRRLQ 190
                 211112223222222222.244455555555466676633445666677777776665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.077
      AAA_33   5 vGlpGsGKstlaerllk 21 
                  Gl+G+GK+ l + l  
  CTQ27009.1 288 AGLAGAGKTELCKALFG 304
                 7**********999875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.014       8.8      19      42 ..      31      54 ..      13      64 .. 0.75
   2 ?    7.9   0.1    0.0048         3       5      42 ..     270     305 ..     266     312 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.014
                TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE 19 gdvilLeGdLGaGKTtlvrglaka 42
                g+v +L+G  GaGK+tl+  l+ +
  CTQ27009.1 31 GSVHALTGANGAGKSTLMAVLCGT 54
                67899************9988765 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0048
                 HHHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE   5 eetealgkklakalgdvilLeGdLGaGKTtlvrglaka 42 
                 + ++++  +l k  g+++ + G  GaGKT l+++l  a
  CTQ27009.1 270 ALLQDISLRLRK--GEILGIAGLAGAGKTELCKALFGA 305
                 455555666656..889999*************99765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0035       2.2      21      50 ..      36      65 ..      32      67 .. 0.89
   2 ?    4.7   0.1     0.026        16      18      37 ..     284     303 ..     269     315 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0035
  Zeta_toxin 21 lgGqpGAGKselaellkdelerqgnvvrld 50
                l G+ GAGKs+l++ l   ++++++ v+++
  CTQ27009.1 36 LTGANGAGKSTLMAVLCGTHAHYEGEVTIN 65
                88**************99999999999887 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.026
  Zeta_toxin  18 lillgGqpGAGKselaellk 37 
                 ++ ++G  GAGK+el ++l 
  CTQ27009.1 284 ILGIAGLAGAGKTELCKALF 303
                 55689**********99875 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.013       8.1      33      50 ..      35      52 ..      20      67 .. 0.82
   2 ?    6.1   0.0    0.0074       4.6      16      50 ..     269     303 ..     260     314 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.013
                EEEE-TTSSHHHHHHHHH CS
        MeaB 33 GltGvPGaGkstlvealg 50
                 ltG  GaGkstl+  l 
  CTQ27009.1 35 ALTGANGAGKSTLMAVLC 52
                69***********98775 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0074
                 HHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB  16 kellerllakaGraqvvGltGvPGaGkstlvealg 50 
                 ++ll+ ++ +  + + +G+ G+ GaGk  l +al 
  CTQ27009.1 269 EALLQDISLRLRKGEILGIAGLAGAGKTELCKALF 303
                 579999999999****************9999885 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0031       1.9       3      23 ..      34      54 ..      32      80 .. 0.87
   2 ?    3.3   0.1      0.11        69       5      28 ..     287     310 ..     283     316 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0031
                EEEEC-TTTCHHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklala 23
                 +l+G++G GK+tL++ l+ +
  CTQ27009.1 34 HALTGANGAGKSTLMAVLCGT 54
                5799***********998765 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.11
                 EEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT   5 lqGeaGsGKTtLlqklalawaegk 28 
                 + G aG GKT L + l  a +++ 
  CTQ27009.1 287 IAGLAGAGKTELCKALFGASKSRV 310
                 889*********999877666655 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   0.00011     0.067      27      46 ..      32      51 ..       9      56 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00011
                HHHHHHS--SHHHHHHHHHH CS
        MukB 27 lvttlsGgnGaGksttmaaf 46
                 v +l G+nGaGkst ma +
  CTQ27009.1 32 SVHALTGANGAGKSTLMAVL 51
                6899*************976 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.033        20      22      43 ..      33      54 ..      19      91 .. 0.84
   2 ?    6.2   0.0    0.0082       5.1      21      43 ..     283     305 ..     269     317 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.033
                EEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 22 vvalvGmgGvGKttlakqilnk 43
                v al G  G GK+tl++     
  CTQ27009.1 33 VHALTGANGAGKSTLMAVLCGT 54
                45899**********9876655 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0082
                 EEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  21 lvvalvGmgGvGKttlakqilnk 43 
                  ++++ G +G GKt l k  +  
  CTQ27009.1 283 EILGIAGLAGAGKTELCKALFGA 305
                 489*************9998865 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0068       4.2       6      44 ..      36      74 ..      33      94 .. 0.91
   2 ?    3.7   0.0     0.079        49       7      23 ..     288     304 ..     283     310 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0068
   PduV-EutP  6 liGkvgsGKttLtqalkgeelkYkktqaiefsdeviDtP 44
                l G+ g+GK tL+  l g + +Y+   +i+  + +i +P
  CTQ27009.1 36 LTGANGAGKSTLMAVLCGTHAHYEGEVTINNLPVTIRSP 74
                6899*********************99999999999888 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.079
   PduV-EutP   7 iGkvgsGKttLtqalkg 23 
                  G  g+GKt L++al g
  CTQ27009.1 288 AGLAGAGKTELCKALFG 304
                 5889**********966 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00024      0.15      17      44 ..      22      49 ..       5      53 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00024
      AAA_27 17 rsldfsaeeadlhliyGpNEAGKstalr 44
                +++df  +  ++h + G+N AGKst+++
  CTQ27009.1 22 NKVDFTLHGGSVHALTGANGAGKSTLMA 49
                5789999999***************986 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0014      0.89      60      89 ..     158     187 ..     144     188 .. 0.84
   2 ?   -0.4   0.0       2.3   1.4e+03      29      42 ..     395     408 ..     383     410 .. 0.83
   3 ?   -0.9   0.1       3.2     2e+03      66      87 ..     419     440 ..     413     442 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0014
     SbcCD_C  60 repalrlvfLDEAFsklDeesiatllelle 89 
                  ++++r+++LDE  + lD++ +++l+++++
  CTQ27009.1 158 LSHHCRFLILDEPTAPLDQHESERLFAVVR 187
                 4689********************998876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 2.3
     SbcCD_C  29 ssgtlSGGekqfla 42 
                   ++lSGG +q++a
  CTQ27009.1 395 TLRRLSGGNQQKVA 408
                 56899*****9875 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 3.2
     SbcCD_C  66 lvfLDEAFsklDeesiatllel 87 
                 ++++DE  +++D +  + l+ l
  CTQ27009.1 419 VLIFDEPTKGVDVKAKTDLFML 440
                 789*********9988777765 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0024       1.5       4      72 ..      16      89 ..      14     169 .. 0.64
   2 ?   -1.2   0.0       1.7     1e+03     100     110 ..     160     170 ..      95     201 .. 0.44
   3 ?    1.0   0.0      0.35   2.2e+02      15      38 ..     278     301 ..     270     312 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0024
                SSTHHHHHHCTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHH......CSTSEEEEEESSSXHHHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  4 tgfkdLDkltsGlqkgdliiiAarpsmGktalalniaenaav......keklpvavfslemsaeqlvqRllssea 72
                +gf+ L+k+   l+ g +  + +  + Gk++l+  ++ + a+       ++lpv++ s   +a+ql   l+ +e 
  CTQ27009.1 16 SGFQALNKVDFTLHGGSVHALTGANGAGKSTLMAVLCGTHAHyegevtINNLPVTIRSP-RDAKQLGIHLVQQEV 89
                79*****************************9988886666422222212223444442.345555555555554 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.7
                 HHSEEEEEEXS CS
                 xxxxxxxxxxx RF
      DnaB_C 100 seaklfiddtp 110
                 ++ +++i d+p
  CTQ27009.1 160 HHCRFLILDEP 170
                 22333333333 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.35
                 SBXTTXEEEEEEXTTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  15 GlqkgdliiiAarpsmGktalaln 38 
                  l+kg+++ iA+ ++ Gkt l+  
  CTQ27009.1 278 RLRKGEILGIAGLAGAGKTELCKA 301
                 5899***************99865 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.024        15       4      27 ..      33      56 ..      31      85 .. 0.82
   2 ?   -2.0   0.0       5.5   3.4e+03      49      73 ..     146     170 ..     120     199 .. 0.61
   3 ?    3.2   0.1      0.13        82       2      26 ..     282     306 ..     281     318 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.024
      AAA_14  4 ilvitGaRrvGKTtllkqlikell 27
                + ++tGa  +GK+tl+  l  ++ 
  CTQ27009.1 33 VHALTGANGAGKSTLMAVLCGTHA 56
                5689************98876655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.5
      AAA_14  49 pekllelilek.lkeekktylflDEi 73 
                  ++  +++l++ l+ ++ ++l+lDE 
  CTQ27009.1 146 LAEKQQILLARaLS-HHCRFLILDEP 170
                 33344556665333.36778999984 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.13
      AAA_14   2 rkilvitGaRrvGKTtllkqlikel 26 
                 ++il i G+  +GKT l+k l+  +
  CTQ27009.1 282 GEILGIAGLAGAGKTELCKALFGAS 306
                 57999**************998655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1    0.0022       1.3       3      20 ..      35      52 ..      33      69 .. 0.83
   2 ?   -1.2   0.1       3.4   2.1e+03      17      79 ..     106     168 ..     103     176 .. 0.68
   3 ?    1.6   0.0      0.48   2.9e+02       5      20 ..     288     303 ..     286     323 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0022
      AAA_28  3 vitGgestGKTtlleaLa 20
                ++tG+ ++GK+tl++ L 
  CTQ27009.1 35 ALTGANGAGKSTLMAVLC 52
                79***********99875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.4
      AAA_28  17 eaLaargypvvpEaareileeklakgedalpwvedllafaervleeqleeeaaa.aankvlfcD 79 
                  +La+ g++  +  +r++ +e la+   al+  ++ ++   + +++q+  ++a  + +++l++D
  CTQ27009.1 106 DRLAEPGMTFRWSRVRQLAREALAQLDVALDV-RRSIDSCTLAEKQQILLARALsHHCRFLILD 168
                 56777777777777888888888888888877.5666666666666664444435677777777 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.48
      AAA_28   5 tGgestGKTtlleaLa 20 
                  G  ++GKT l++aL 
  CTQ27009.1 288 AGLAGAGKTELCKALF 303
                 56779*********96 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.009       5.6       3      21 ..      36      54 ..      34      79 .. 0.83
   2 ?    2.2   0.0      0.39   2.4e+02       3      21 ..     287     305 ..     285     325 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.009
  RNA_helicase  3 lyGpsgeGKStlakeLaka 21
                  l+G++g GKStl+  L+ +
    CTQ27009.1 36 LTGANGAGKSTLMAVLCGT 54
                  78************99865 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.39
  RNA_helicase   3 lyGpsgeGKStlakeLaka 21 
                   + G +g GK+ l+k L  a
    CTQ27009.1 287 IAGLAGAGKTELCKALFGA 305
                   57889*********98655 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.32     2e+02       4      21 ..      37      54 ..      34      86 .. 0.77
   2 ?   -1.8   0.0       3.4   2.1e+03      60      72 ..     159     171 ..     139     175 .. 0.77
   3 ?    5.7   0.0     0.018        11       3      21 ..     287     305 ..     285     333 .. 0.85
   4 ?   -2.7   0.0       6.4   3.9e+03      62      74 ..     416     428 ..     409     433 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.32
  Viral_helicase1  4 hGvpGcGKStlirkllrt 21
                      G+ G+GKStl   l+ t
       CTQ27009.1 37 TGANGAGKSTLMAVLCGT 54
                     6999******98777666 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.4
  Viral_helicase1  60 stkgkililDEyl 72 
                      s ++++lilDE +
       CTQ27009.1 159 SHHCRFLILDEPT 171
                      3469999999965 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.018
  Viral_helicase1   3 vhGvpGcGKStlirkllrt 21 
                      ++G +G+GK+ l++ l+  
       CTQ27009.1 287 IAGLAGAGKTELCKALFGA 305
                      78************99876 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 6.4
  Viral_helicase1  62 kgkililDEylll 74 
                      ++++li+DE +++
       CTQ27009.1 416 DANVLIFDEPTKG 428
                      589******8875 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1      0.12        76       2      18 ..      37      53 ..      36      68 .. 0.73
   2 ?    6.3   0.1     0.011       7.1       1      17 [.     287     303 ..     287     313 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.12
  ATP_bind_1  2 vGpaGsGKttfvgalse 18
                +G  G+GK+t++  l  
  CTQ27009.1 37 TGANGAGKSTLMAVLCG 53
                6999*******998764 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.011
  ATP_bind_1   1 vvGpaGsGKttfvgals 17 
                 ++G aG+GKt +++al 
  CTQ27009.1 287 IAGLAGAGKTELCKALF 303
                 68************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 3840.60
//
Query:       CTQ27010.1  [L=332]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-36  123.6  43.2    7.6e-36  123.6  43.2    1.4  2  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2      0.18   3.3e+03      52     145 ..      25      36 ..       8      40 .. 0.46
   2 !  123.6  43.2   4.2e-40   7.6e-36       1     267 [.      49     322 ..      49     323 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.18
  BPD_transp_2  52 lsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvgltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlav 145
                   ++                                                                                  ll+++l++av
    CTQ27010.1  25 GM----------------------------------------------------------------------------------LLTVVLLVAV 36 
                   22..................................................................................3333333332 PP

  == domain 2  score: 123.6 bits;  conditional E-value: 4.2e-40
  BPD_transp_2   1 gilnlltlaailaiaAlGlalvfgiaGvinlghggfmalG.ayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlv 96 
                   +i+n+l+++ai++ +A+G++++   +G+++l++g+ + l+ a v+ l +  +l     a+l+ l+++ +vgl++++l+++l+++ +++tl+ l+v++
    CTQ27010.1  49 NIINILRSIAIVTVIAIGVSISL-TIGGFDLSVGSTASLAnALVISLFVWHGL-GTTEAILITLALCTLVGLFNAFLIVVLRIPDMLATLASLFVIQ 143
                   699********************.****************6665555555555.499**************************************** PP

  BPD_transp_2  97 gltlll.ltgitsgvkgqssvkellgfagallsflsaviv..llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalA 190
                   g++ ++ ++g +  ++  +s+  + g+ +a +  l++v +  +++l+++l++ l l +t  Gr+++a+g+n+eaar++G++++r+k++++vi+++lA
    CTQ27010.1 144 GVAMTYsYGGSITENMVLPSGEMAEGTIPAAFGALGQVPTivIIMLVVTLIAQLALSFTTHGRRMYAIGGNPEAARLSGLRITRYKVAAYVIASLLA 240
                   **98772455555555555555556666666666666544779999*************************************************** PP

  BPD_transp_2 191 glaGallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilv 267
                   gl G+lla ++gs+++n+g g+ ++a+aa+ +G         ++lgt++Ga+i+gv+++ +l +l++p    +++ g++l  +
    CTQ27010.1 241 GLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSlagsgkPNALGTLVGAVILGVLSN-GLVMLSVPYYAMDIIKGLVLAGA 322
                   *********************************9999999999****************.999999*9999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       974  (0.0543254); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2473.20
//
Query:       CTQ27011.1  [L=354]
Description: putative sugar ABC transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-28  100.3   5.5    1.7e-28   99.9   5.5    1.2  1  Peripla_BP_4  Periplasmic binding protein domain
    1.8e-08   34.1   0.0    2.7e-08   33.6   0.0    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    3.1e-08   34.1   0.0    2.7e-06   27.8   0.0    2.2  2  Peripla_BP_3  Periplasmic binding protein-like domain
  ------ inclusion threshold ------
       0.17   11.1   0.0       0.27   10.5   0.0    1.3  1  YcaO          YcaO cyclodehydratase, ATP-ad Mg2+-binding


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   5.5   3.9e-32   1.7e-28      13     257 ..      52     298 ..      40     299 .. 0.90

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 3.9e-32
                   HHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHHHHH CS
  Peripla_BP_4  13 fsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdneaaGe 109
                    +++  g+ +  k+lg++    + +++d+a+ ++++++ai++++dgii++    +  ++ +kka +aGI+V +fd++++ + +++ + ++d     e
    CTQ27011.1  52 TTQFVAGALQEGKKLGFKIST-FLSNGDDAKFQDFVNQAISQKYDGIILSQGRDPYSTALVKKAVDAGIKVAVFDTAVSGEIPGVTVSQQDDASLTE 147
                   456778888899999998887.79************************************************************************* PP

                   HHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHHTTT...ECEEEESSCCHHHCHHHHH CS
  Peripla_BP_4 110 lqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaeva.ganwdaekaqqalealltanp...ldgilaandgmaegaleal 202
                   l   +l++  +gk +++v l  ++g p  e r ++    lk+ pgik ++++  +  + + ++ +++ a+l+++p   +d+i++++d+  +ga +al
    CTQ27011.1 148 LSFGQLVKDFNGK-ANIVKL-WVAGFPPMERRQAAYQTLLKQNPGIKELESIGaVSSDVQGDTANKVGAILAKYPkgkIDAIWGTWDAFSQGAYKAL 242
                   ************9.****99.89999999999999999999999*****94442335777788888******885588******************* PP

                   HHTTTTSTEEEEEES-HHHHHHHHHTTSSE..EEEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 203 eaaglagkvvvtgqDatpealeaikdGtid..atvaqdpyelgyaavelavallkGk 257
                   +++g++ ++ ++ +D +++ l+++++       +va dp+ +g++ v+l+++ ++G+
    CTQ27011.1 243 KENGRTEIK-LYSIDISNQDLQLMREAGSPwkVSVAVDPKLIGATNVRLIANKIAGE 298
                   ****99887.**************999998667*****************9999987 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   6.1e-12   2.7e-08      19     209 ..      55     252 ..      43     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 6.1e-12
                   HHHHHHHHHHHHTEEE.EEEE-SSHHHHHHHHHHHHHTT-SEEEEE.-S-GGHHHHHHHHHH.T-EEEEESS--B-T.TTS-EEEE-HHHHHHHHHH CS
  Peripla_BP_1  19 lvkgitkaakehgvdv.lllaageeedlakaidllkakgidgliia.tsdtsfdditakaes.gipvialedaidap.dgvPcvipddtqageestq 111
                    v+g+ +++k++g+++ + l  g++++ +  +++  +++ dg+i+  ++d+ + ++++ka   gi+v   + a+     gv +   dd    e s+ 
    CTQ27011.1  55 FVAGALQEGKKLGFKIsTFLSNGDDAKFQDFVNQAISQKYDGIILSqGRDPYSTALVKKAVDaGIKVAVFDTAVSGEiPGVTVSQQDDASLTELSFG 151
                   6889999*******95378999999*********************9*************999***99998886543438888899*********** PP

                   HHHHHHHHHT.GEEEEEE-TTSHHHHHHHHHHHHHHH.TT-GGGEEEEE-SSSSHH.HHHHHHHHHHTT-TT..-SEEE-SSHHHHHHHHHHHHHTT CS
  Peripla_BP_1 112 kLiaeghkrp.iallegpesaltakervqGflaalae.aGlevkdvhvalgsndie.daaealnelleshPe..idaivaindeaalGavlalkkeG 203
                   +L++   ++  i+ l+    +   ++ +  +   l++  G  ++   +  +s+d++ d a+ + ++l + P   idai +  d    Ga+ alk +G
    CTQ27011.1 152 QLVKDFNGKAnIVKLWVAGFPPMERRQA-AYQTLLKQnPGI-KELESIGAVSSDVQgDTANKVGAILAKYPKgkIDAIWGTWDAFSQGAYKALKENG 246
                   ****999998886666665554333333.355554441588.777888888888653789**********863377********************* PP

                   .--GGG CS
  Peripla_BP_1 204 rlkike 209
                   r +ik 
    CTQ27011.1 247 RTEIKL 252
                   *99986 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.012        55      11      91 ..      39     112 ..      34     137 .. 0.77
   2 !   27.8   0.0   5.9e-10   2.7e-06      23     151 ..     171     302 ..     163     308 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.012
                   EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEE..SSCCHHHHHHH CS
  Peripla_BP_3  11 riafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPtAvia..asDelAlgvlq 91 
                   ria+i+  +   + + ++  +g+ q+ ++lg++  +++ ++dd+  ++ +++a+  q++      +++i     D    ++++
    CTQ27011.1  39 RIAVIR--NLGSDDNTTQFVAGALQEGKKLGFKISTFLSNGDDAKFQDFVNQAI-SQKY------DGIILsqGRDPYSTALVK 112
                   899999..777778899999************************9999999977.1333......455553344444444444 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 5.9e-10
                   -HHHHHHHHHHHHHH.TTSSS-EEEEE-S-SS-SSHHHHH.......HHH.HHCC-SEEEEESSCCHHHHHHHHHCCTT--TTTTEEEEBSS..--. CS
  Peripla_BP_3  23 asasderergfrqal.eelglplnetvvaaddpaaaaaaraal.ll.qal.klaalPtAviaasDelAlgvlqalreaglrvPedlsvigfd..ds. 112
                    + +++r+++++  l +  g++  e ++a   +  +++ +++   +  ++ k+++  +A++ ++D+  +g+++al+e g     +++++++d  ++ 
    CTQ27011.1 171 FPPMERRQAAYQTLLkQNPGIKELESIGAVSSDV-QGDTANKVgAIlAKYpKGKI--DAIWGTWDAFSQGAYKALKENGR---TEIKLYSIDisNQd 261
                   5678899999999998899999998888666554.44444444333355566666..8**********************...6******9954333 PP

                   .SCC.CSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S- CS
  Peripla_BP_3 113 .ela.alssPplTtvrqpleelGraaaellldllegekapp 151
                     l+ +  sP+  +v+++++ +G + ++l++  ++ge++p+
    CTQ27011.1 262 lQLMrEAGSPWKVSVAVDPKLIGATNVRLIANKIAGEPTPA 302
                   3556788899999**********************999986 PP

>> YcaO  YcaO cyclodehydratase, ATP-ad Mg2+-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     6e-05      0.27     156     200 ..      99     145 ..      79     152 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6e-05
        YcaO 156 la..sdpeirellerlreagievrlldatldlgipvvaavlvdpkll 200
                 l+  +dp+  +l++++ +agi+v ++d+   ++ip v++   d+  l
  CTQ27011.1  99 LSqgRDPYSTALVKKAVDAGIKVAVFDTAVSGEIPGVTVSQQDDASL 145
                 444488*******************************9998885533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2430.44
//
Query:       CTQ27012.1  [L=413]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-07   30.0   0.0       0.72    9.2   0.0    4.9  4  LVIVD        LVIVD repeat
     0.0051   15.7   0.1         21    3.8   0.0    4.2  4  SBP56        56kDa selenium binding protein (SBP56)
     0.0059   15.5   0.0        3.5    6.4   0.0    3.7  5  Beta_propel  Beta propeller domain


Domain annotation for each model (and alignments):
>> LVIVD  LVIVD repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00012      0.72       9      37 ..      32      61 ..      27      64 .. 0.83
   2 !    7.5   0.0   0.00042       2.5      19      37 ..     119     137 ..     118     140 .. 0.87
   3 !    4.2   0.0    0.0044        26      10      37 ..     218     245 ..     215     249 .. 0.85
   4 ?    2.2   0.0     0.019   1.1e+02      27      38 ..     352     363 ..     343     365 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00012
       LVIVD  9 vsGnYaYvAd.qdngLvIvDISNpSsptlk 37
                v  ++aY++     g+ +vD+ +p+ pt +
  CTQ27012.1 32 VHRGFAYIGHmVSQGFSVVDVRDPTRPTTV 61
                6678****953579*************865 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00042
       LVIVD  19 qdngLvIvDISNpSsptlk 37 
                 +  gL I DIS p++p ++
  CTQ27012.1 119 WSAGLRIFDISTPAQPREI 137
                 5689************886 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0044
       LVIVD  10 sGnYaYvAdqdngLvIvDISNpSsptlk 37 
                  G+ aY   +d+gL+ +D+ + ++p l+
  CTQ27012.1 218 AGDTAYGSWRDGGLTLLDVKDRTQPRLI 245
                 5777888889**************9987 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.019
       LVIVD  27 DISNpSsptlkg 38 
                 DISNp  p + g
  CTQ27012.1 352 DISNPYRPLETG 363
                 *****9988766 PP

>> SBP56  56kDa selenium binding protein (SBP56)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0077        46     324     351 ..     119     145 ..     116     159 .. 0.86
   2 ?    1.5   0.0     0.017     1e+02     317     355 ..     156     198 ..     149     221 .. 0.74
   3 ?    1.2   0.0     0.021   1.2e+02     323     344 ..     225     246 ..     220     249 .. 0.90
   4 !    3.8   0.0    0.0035        21     320     346 ..     339     365 ..     333     377 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0077
       SBP56 324 WltGdlrqydisdpkkPkltgqvrlGGi 351
                 W  G lr +dis p++P++ + ++l Gi
  CTQ27012.1 119 WSAG-LRIFDISTPAQPREISFLSLNGI 145
                 5555.9***************9999997 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.017
       SBP56 317 rflyvsnWltG..d..lrqydisdpkkPkltgqvrlGGiirka 355
                 r+ yvs+   G  d  +   d+ dp+kPk +g+ +l G+ +  
  CTQ27012.1 156 RWAYVSALIDGftDyiFLTIDLADPRKPKVAGRWWLPGMHQAG 198
                 6667776666622221345699***************998765 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.021
       SBP56 323 nWltGdlrqydisdpkkPkltg 344
                 +W+ G l   d++d+++P+l +
  CTQ27012.1 225 SWRDGGLTLLDVKDRTQPRLIS 246
                 7******************975 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.0035
       SBP56 320 yvsnWltGdlrqydisdpkkPkltgqv 346
                  ++++++  +r ydis+p +P +tg +
  CTQ27012.1 339 IFATYQNAGVRAYDISNPYRPLETGAL 365
                 567788889*************99975 PP

>> Beta_propel  Beta propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.9   0.0    0.0064        38      92     116 ..     107     144 ..      37     149 .. 0.58
   2 !    6.4   0.0   0.00058       3.5     333     353 ..     173     193 ..     168     196 .. 0.89
   3 ?   -3.3   0.0       0.5     3e+03     386     399 ..     232     245 ..     226     249 .. 0.62
   4 ?    1.0   0.0     0.025   1.5e+02     385     402 ..     288     305 ..     263     317 .. 0.74
   5 ?   -4.1   0.0      0.84     5e+03      93     107 ..     346     360 ..     336     365 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.0064
  Beta_propel  92 e.............tkvliyDisdkenpkllreleldG 116
                                + ++i+Dis++++p+ ++ l+l+G
   CTQ27012.1 107 VgdtvsdvqdrgwsAGLRIFDISTPAQPREISFLSLNG 144
                  13444555555666666677777777776666666665 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00058
  Beta_propel 333 FviDLsdpanPkilGeLkIpG 353
                   +iDL dp++Pk++G   +pG
   CTQ27012.1 173 LTIDLADPRKPKVAGRWWLPG 193
                  48*************998888 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.5
  Beta_propel 386 slFDVsDpanpkev 399
                  +l DV+D ++p+ +
   CTQ27012.1 232 TLLDVKDRTQPRLI 245
                  55566666665544 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.025
  Beta_propel 385 lslFDVsDpanpkevakv 402
                  + lFD+ +p+np+++a++
   CTQ27012.1 288 IWLFDIREPTNPVSIATF 305
                  67**********999876 PP

  == domain 5  score: -4.1 bits;  conditional E-value: 0.84
  Beta_propel  93 tkvliyDisdkenpk 107
                  + v++yDis++  p 
   CTQ27012.1 346 AGVRAYDISNPYRPL 360
                  456667777766664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3113.11
//
Query:       CTQ27013.1  [L=399]
Description: Methylthioribose kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-09   37.5   4.1    3.8e-09   36.8   4.1    1.4  1  APH        Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.018   14.4   0.2       0.13   11.6   0.1    2.3  2  APH_6_hur  Aminoglycoside/hydroxyurea antibiotic resistance k


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   4.1   4.3e-13   3.8e-09       3     210 ..      32     268 ..      30     316 .. 0.72

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 4.3e-13
                 EEE--.SSCEEEEEEETT-..-EEEEE...........E-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS... CS
         APH   3 relsggasnrtylvttpag..ryvlrr...........npparaaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllr... 84 
                 +e+++g+ n +++v + +g  r ++++           +p   +  ++r e++ l +  ++ + ++ +++++     + +l + ++e +  + ++r   
  CTQ27013.1  32 QEVGDGNLNLVFKVFDRQGvsRAIVKQalpyvrcvgesWPLT-L-DRARLEAQTLVAHYQHSPqHTVKIHHF-----DPELAVMVMEDLSDHRIWRgel 123
                 789999999999999999788999999777777766654444.3.333333333333344444466688884.....3344799*************98 PP

                 ...HHHHHHHHHHHHHHHHHHC..............CHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCC.HHHHHHHHHHHHHHHH--S..S CS
         APH  85 ...klsaaqlpellealgefla..............alhqvdpaalpladflaqdlellrqlesatarllaselld.lleeleeqvlaalaallpg..e 163
                      +++ +++l++ l+++l+              ++ q+   +  ++ ++++  +++++   ++++++a++  d  +++ ++q+  a+aal ++  +
  CTQ27013.1 124 ianVYYPQAARQLGDYLAQVLFhtsdfylhphekkaQVAQF--INPAMCEITEDLFFNDPYQIHERNNYPAELEADvAALRDDAQLKLAVAALKHRffA 220
                 87766677777777777777776666655555554444444..456677888899999999999999****999997555555556666666666688* PP

                 S-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCH....H CS
         APH 164 lptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavll....r 210
                  ++ llHgD+h+g + v   +g +   iD e+   gp+ +D+++++     
  CTQ27013.1 221 HAEALLHGDIHSGSIFVA--EGSL-KAIDAEFGYFGPIGFDIGTAIgnllL 268
                 ******************..5555.379**************988754442 PP

>> APH_6_hur  Aminoglycoside/hydroxyurea antibiotic resistance kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.042   3.7e+02       5      39 ..      29      64 ..      26     120 .. 0.79
   2 ?   11.6   0.1   1.4e-05      0.13     136     202 ..     200     266 ..     180     325 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.042
   APH_6_hur  5 sedgevaetesSlvlkVlradG.apAvlKlakpred 39
                +  +ev +++  lv+kV   +G ++A++K a p  +
  CTQ27013.1 29 VSAQEVGDGNLNLVFKVFDRQGvSRAIVKQALPYVR 64
                566778888888999999777746899998877655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.4e-05
   APH_6_hur 136 a..gasrlyveaaaiaaeLleepselrpLHgdlhhenvLagerrgWlaidPk.glvGergfdlanllrnp 202
                 a  ++++l  ++aa ++++ ++++   +LHgd+h   ++ +e     aid + g +G  gfd   ++ n 
  CTQ27013.1 200 AlrDDAQLKLAVAALKHRFFAHAEA--LLHGDIHSGSIFVAE-GSLKAIDAEfGYFGPIGFDIGTAIGNL 266
                 3556667777889999999999887..9************99.8889***986899******98777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2980.80
//
Query:       CTQ27014.1  [L=342]
Description: Methylthioribose-1-phosphate isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-68  230.1   0.0    3.6e-68  229.8   0.0    1.0  1  IF-2B     Initiation factor 2 subunit family
  ------ inclusion threshold ------
        0.1   13.1   0.1       0.56   10.7   0.1    2.0  2  PIN       PIN domain


Domain annotation for each model (and alignments):
>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.8   0.0     4e-72   3.6e-68       2     282 .]      48     329 ..      47     329 .. 0.94

  Alignments for each domain:
  == domain 1  score: 229.8 bits;  conditional E-value: 4e-72
                 S-SHHHHHHHHHHHHHHHHHHCCCSTHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHCCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       IF-2B   2 vrGspaiaiaalevllevikdaktskvaeLkeelrkaidlLkkarPtavslgnairrllkeiselksssdvkeakksliekikelikeieeadekigdi 100
                 vrG+p i+++a+ +l+  +++         +  l++a+++L++arPtav+l n ++r+++           ++  ++l  ++ +l++e+++ +  i+++
  CTQ27014.1  48 VRGAPLIGLSASLLLALLAQRGLN------RDALQQALETLRAARPTAVNLMNNLDRMKQ-------ALAREDYPQALEAEALRLVEEDKQLCDRIAEA 133
                 899999999999999999988762......56899*************************.......456888999999******************** PP

                 HHTTC-TTEEEEEES--SH........HHHHHHHHHHTTEEEEEEEEEXTTTTHH.HTHHHHHHHTTXEEEEEEGGGHHHHHHC.TESEEEEEXSEEET CS
       IF-2B 101 aaelikdgdtilTicnskt........vlevlraaakekkkfkVivvEsrPrlqG.rltakeLvqagipvtlitdsavayvmse.evdkvivGAdrile 189
                 ++ l+k g ++lT+cn++         +l+v+  a++++k  +V+v E+rP lqG rlta+eL + g+p  li ds++a +m + +vd+v vGAdri++
  CTQ27014.1 134 GSALVKPGSRLLTHCNTGGlatagvgtALGVIALAHRQGKVTNVWVDETRPLLQGgRLTAWELGELGVPYQLIADSMAASLMAQgQVDAVWVGADRIAA 232
                 ******************999****************************************************************************** PP

                 TSEEEEETTHHHHHHHHHHTTXEEEEEXXGGGBESTSSSGGGSSXXBEXTHHHHEETT....EESSTTTEEEEEBSEEEEEGGGXSEEEETTEEEXC CS
       IF-2B 190 nGaiankiGTsslAvlAkefnipvlvvaeslkfservqldedifieerdpeellnitg....eriaeeelkvvnpafDvtPpelItliITevGvlpp 282
                 nG++ankiGT+slAvlA+ ++ip++v+a+ +++++  ++++ i ie r+++e++ ++g    ++ a+   +v+npafDvtP+ lI++ + + Gv++p
  CTQ27014.1 233 NGDVANKIGTYSLAVLAHYHQIPFYVAAPQTTLDRYCPNGAAIPIEQRAAAEVTGVAGsfgaVQWAPTGAAVYNPAFDVTPAGLISGWVLDSGVVTP 329
                 *****************************************************988762222567777**************************997 PP

>> PIN  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   6.2e-05      0.56       6      84 ..      59     133 ..      56     141 .. 0.88
   2 ?   -1.0   0.0      0.26   2.3e+03      78     109 ..     193     223 ..     188     231 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.2e-05
                 HHHHHHHTTSHHHHHHHHHHHTS.SEEEEEHHHHHHHHHHHHSSCHCHHHHHHHHHHHHHHHTSEEEEBCHHHHHHHHHH CS
         PIN   6 svliallrgeekaeaarklleel.eelvtsalvlaEllyvlarrkskrekaaelvelllllsalkilpidaeiaeeaaei 84 
                 s l+all  +  +   r++l+++ e+l     ++  l++ l r   k+ +a+e   + l+++al++++ d+++ +++ae 
  CTQ27014.1  59 SLLLALLAQRGLN---RDALQQAlETLRAARPTAVNLMNNLDR--MKQALAREDYPQALEAEALRLVEEDKQLCDRIAEA 133
                 7788888777777...666666669******************..*******************************9986 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHSBHHHHHHHHHHHHHT-EEE CS
         PIN  78 aeeaaeialkygllpnDaliaAtAkehgikli 109
                 a+e +e+   y  l++D + a+++ + + +++
  CTQ27014.1 193 AWELGELGVPY-QLIADSMAASLMAQGQVDAV 223
                 57777777888.8999*******999888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2543.23
//
Query:       CTQ27015.1  [L=422]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-37  127.8   0.0    1.4e-36  126.7   0.0    1.5  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)
  ------ inclusion threshold ------
      0.052   13.2   0.0       0.79    9.4   0.0    2.5  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)
       0.64   10.0   3.8         11    6.0   0.7    2.6  2  HalOD2      Halobacterial output domain 2


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.0   2.3e-40   1.4e-36       1     382 [.      32     357 ..      32     358 .. 0.93

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 2.3e-40
                 EEEEEEEEEE--SBB-SHHHHHHHHHHHHHHHH.........HHCHHTGCCGGGGT.........--SSSTTS.B-HHHHHHHHHHHHHHHHHCH.TCC CS
  His_Phos_2   1 eLksvvvviRHGdRtPkqkvkksvtspiflsllkkhkeKlkqlktalekkghfpgtyrkveveklqlilkwggelthaGrkqaeelGrqfrqrYp.lgL 98 
                 +L++vv ++RHG R P+  +                       +++  +++ ++            ++ + g+ lt +G+  +++ Gr+  q+Y+ lgL
  CTQ27015.1  32 QLEKVVELSRHGIRPPTAGNR---------------------EAIEAATGRPWT-----------EWTTHDGE-LTGHGYAAVVNKGRAEGQHYRqLGL 97 
                 599*****************7.....................6999********...........9***9999.************************* PP

                 HTTSS--.TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-TTTTCCCEEEHHHHCCCCHHCTTSHHTCHHHC....HHHTGGHCHHHH CS
  His_Phos_2  99 lrlhlty.kdlkirassegRviaSAaafakGllglegeltdllskdkdllddsnaakdlldeakkklkelltegaeacpafew....pikvakrvdelv 192
                 l++++++ +++++ras  +R++a+A+a + G ++++g   +++s d d+l ++++   +  +   +l+ +  e+a + ++ ++    +i++ k+ +++ 
  CTQ27015.1  98 LQAGCPTaESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYVSGDADPLFQTDKFAATQTDPARQLAAVK-EKAGDLAQRRQalapTIQLLKQAVCQA 195
                 ******9******************************999**************99999999999999888.566677777777999************ PP

                 CHCCCCCHHHHHHHCHHHCTTEEEE-HHHHHHHHHHHHHHHHHHCT-TTGGGCTH..HCHHHHHHHHHHHH.HHHC........TTTCCCCHHHHHHHH CS
  His_Phos_2 193 kylkedmdeniakrleqlcpgesnllakerwdklercfyeknkfdiskicdlydemkydalhnrylkdlee.lyklakvipqEygigpeeklkiGllll 290
                 ++ ++++d++++  +eq ++g+++++  ++++++ + ++    +++ + ++l     ++a++  +l  l +  y+l        +   ++++k+G++ll
  CTQ27015.1 196 DKPCPIFDTPWQ--VEQSKSGKTTISGLSVMANMVETLRLGW-SENLPLSQLAWGKITQARQITALLPLLTeNYDL-------SNDVLYTAQKRGSVLL 284
                 ************..********************98888888.9********88888999999998876554****.......999************* PP

                 HHHHHHHCTSSSEECCSCCCECS-SEEEEEE-HHHHHHHHHHCTTTTTBTTB.SSS.TTT..HCCCS-CT-EEEEEEEEETCTTTEEEEEEE CS
  His_Phos_2 291 npllkkilndlqrtreeatperhvrlrlyfthdshiysllnaLglpeelagedslaaldrlsaspelpymsqivfelyedssekkfyvrlll 382
                 n++l+ ++ +++ +          r++l ++hd++i+ + +++++ ++l+g+          + +++p++s++v+e++++ +  ++y r+++
  CTQ27015.1 285 NAMLDGVKPEANPNV---------RWLLLVAHDTNIAMVRTLMNFSWQLPGY----------SRGNIPPGSSLVLERWRNAKSGERYLRVYF 357
                 *********999999.........****************************..........*****************7444449***998 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00013      0.79      48      65 ..     110     127 ..      63     134 .. 0.65
   2 ?    0.7   0.0     0.062   3.7e+02     139     184 ..     298     345 ..     275     353 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00013
                 EEE-SSHHHHHHHHHHHH CS
  His_Phos_1  48 iysSplkRarqTaeliae 65 
                 + +Spl+R+r Ta+++ +
  CTQ27015.1 110 VRASPLQRTRATAQALVD 127
                 379***********9876 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.062
                 TSE.EEEEE-HHHHHHHHHHHH.T--GGGGGGB---TT-EEEEEE-SS CS
  His_Phos_1 139 get.vlvVsHggvirallarll.glpleelrrleldnaslsvlefdeg 184
                 + + +l+V+H + i ++ + +   ++l  + r ++++ s  vle  ++
  CTQ27015.1 298 NVRwLLLVAHDTNIAMVRTLMNfSWQLPGYSRGNIPPGSSLVLERWRN 345
                 333689*****9999888888788888889999999999888887665 PP

>> HalOD2  Halobacterial output domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.7    0.0018        11      11      25 ..      65      79 ..      63      82 .. 0.91
   2 ?    4.2   0.1     0.007        42      16      30 ..      84      98 ..      81     116 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0018
      HalOD2 11 dWttrhGdglGeGyr 25
                +Wtt++G+  G+Gy 
  CTQ27015.1 65 EWTTHDGELTGHGYA 79
                7************96 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.007
      HalOD2 16 hGdglGeGyrqLGay 30
                +G++ G+ yrqLG  
  CTQ27015.1 84 KGRAEGQHYRQLGLL 98
                79***********65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3162.99
//
Query:       CTQ27016.1  [L=452]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-38  130.7  40.0      6e-38  130.7  40.0    1.8  2  MFS_1     Major Facilitator Superfamily
     0.0011   17.4   0.2     0.0011   17.4   0.2    3.3  3  OATP      Organic Anion Transporter Polypeptide (OATP) family
     0.0066   16.8   0.0      0.019   15.3   0.0    1.8  1  BatA      Aerotolerance regulator N-terminal
  ------ inclusion threshold ------
      0.082   13.0   0.0       0.39   10.9   0.0    2.1  1  ARL6IP6   Haemopoietic lineage transmembrane helix


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7  40.0   1.3e-41     6e-38       2     352 ..      32     390 ..      31     391 .. 0.83
   2 ?   -0.6   0.1      0.11   4.8e+02      87     112 ..     415     440 ..     392     451 .. 0.59

  Alignments for each domain:
  == domain 1  score: 130.7 bits;  conditional E-value: 1.3e-41
       MFS_1   2 llaaflsalarsi..lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlg 98 
                 ++a  l++ ++++  l++++      +lgi+p+e+g++ ++ ++ +a++ l+ G+++d     r++ lglll+a + l++ ++++  ll++++ + G++
  CTQ27016.1  32 FIAMTLAYVTFYVcrLSFTVAKSALVELGITPTELGMIGSTLFFSYAIGKLVNGFIADHANVVRYMSLGLLLSAGMNLMMGMTTNALLLAIFWGINGWA 130
                 556666666666655333333344578*************************************************66666855555************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplv 197
                 +++++  +a+ +a+w+  +erg  +g++s++ ++G ++++++ +++++ +gW+  ++  a++++ ++vl  +l++ + p+++ ++++    +++p++ v
  CTQ27016.1 131 QSMGVGPCAVSLARWYGVKERGTFYGIWSTAHNIGEAVTYMVIAAVIAGFGWQMGYLSTAALGAAGVVLL-VLFMHDSPQSSGFPSINV-IRDEPQEEV 227
                 **************************************9666666667******************9964.555566666666666666.377777777 PP

       MFS_1 198 pawkallkdpvlw...illialllfffgfsg....lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaal 289
                 +a ++++k++ l     +l++l+l+++++++    + ++  ++l ++  +s  l+a++++++ a++g+++ ++ag lsdr+ +r+r ++a+++ ll ++
  CTQ27016.1 228 EARGSVFKNQLLAlrnPALWTLALASAFMYIdryaVNSWGIFFLEQDKAYS-TLEASGIIGVNAIAGIAGTIIAGMLSDRFFPRNRSVIAGFISLLNTA 325
                 77777777776623443444444444455555666****************.8********************************************** PP

       MFS_1 290 glallavt.ssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 g+al+ ++ +++   +l+++++G   ++++  +   +a+d  ++++ag+a+g +++a+++g+ lg
  CTQ27016.1 326 GFALMLWSpHNYYTDILAMIIFGAtIGALTCFLGGLIAVDISSRKAAGAALGTIGIASYAGAGLG 390
                 ********988999999999999967777777777777788889*****************9997 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.11
       MFS_1  87 lllvlrvlqGlgagalfpagaaliad 112
                 +l++++v +Glg+++l  + aa++a+
  CTQ27016.1 415 TLALFWVGTGLGSALLCFTTAAIVAR 440
                 44555555555554444444444443 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   2.3      0.11   4.9e+02     335     378 ..      68     111 ..      25     125 .. 0.62
   2 !   17.4   0.2   2.4e-07    0.0011     281     379 ..     231     329 ..     180     336 .. 0.78
   3 !    3.3   1.9    0.0044        20     327     382 ..     370     433 ..     331     449 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.11
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 335 ltGvvvipgaalGillgGllvkklklsakklaklvlvvsllsll 378
                 ++G+++ ++ a+G l+ G++  + ++     + l l +++  ++
  CTQ27016.1  68 MIGSTLFFSYAIGKLVNGFIADHANVVRYMSLGLLLSAGMNLMM 111
                 34777777777777777777665544333333333333333222 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 2.4e-07
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
        OATP 281 kdfpkalkrllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakkla.klvlvvsllsll 378
                  +++k  +  l+np ++++ l+s+f+++   ++  +   +lE+    s+ eA+ ++Gv +i  +++G++++G+l  ++ ++ ++++  ++ ++++  ++
  CTQ27016.1 231 GSVFKNQLLALRNPALWTLALASAFMYIDRYAVNSWGIFFLEQDKAYSTLEASGIIGVNAIA-GIAGTIIAGMLSDRFFPRNRSVIaGFISLLNTAGFA 328
                 45555666789**********************************************98875.678**************9998650455555554444 PP

                 x RF
        OATP 379 l 379
                 l
  CTQ27016.1 329 L 329
                 4 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.0044
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 327 lsaseAnlltGvvvipgaalGillgGllvk........klklsakklaklvlvvsllsllllll 382
                 ++a  A   +G+++  ga+lG +l G+++         k   + ++la + + ++l s+ll+++
  CTQ27016.1 370 KAAGAALGTIGIASYAGAGLGEFLTGIIIDktailengKTLYDFSTLALFWVGTGLGSALLCFT 433
                 3444555568999999**************3333333333334444444444444444444444 PP

>> BatA  Aerotolerance regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.1e-06     0.019      11      75 ..     190     254 ..     181     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.1e-06
        BatA  11 lallllplpiillyllkrrpqevvfsslrlleevekdeea.lqrlkknllllLrllalallvlalA 75 
                 +al ++ + ++l++++   pq   f+s+  ++  +++e   + +  kn ll+Lr  al  l+la A
  CTQ27016.1 190 AALGAAGV-VLLVLFMHDSPQSSGFPSINVIRDEPQEEVEaRGSVFKNQLLALRNPALWTLALASA 254
                 45555566.789*******************776666555799*****************999976 PP

>> ARL6IP6  Haemopoietic lineage transmembrane helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.7e-05      0.39      14      51 ..     155     192 ..     147     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.7e-05
     ARL6IP6  14 aldWserhqlasklspllaGllvaaFsyglvYlDsavP 51 
                  + Ws+ h+++  +  +++  ++a F + + Yl  a  
  CTQ27016.1 155 YGIWSTAHNIGEAVTYMVIAAVIAGFGWQMGYLSTAAL 192
                 568******************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3636.48
//
Query:       CTQ27017.1  [L=269]
Description: Inositol-1-monophosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-48  165.7   0.0    1.7e-48  165.5   0.0    1.0  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.5   0.0   9.5e-53   1.7e-48       4     242 ..      11     240 ..       8     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 165.5 bits;  conditional E-value: 9.5e-53
                 HHHHHHHHHHHHHHHHHHHHTT.TSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHHHHH CS
  Inositol_P   4 evtkaavelaakagevlreefs.enelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTknFvr 101
                   ++ a+ela++ +e+ +e+++  + l++++k+ +  +d+v+ ad++ve++++++++  fp++ +lgee++a+       ++++ w+vDPiDGT+ F++
  CTQ27017.1  11 ARYRLACELAKAGAELAFEYYQqREALTVDHKG-DDLQDVVSVADKRVEAFVKQRIQSAFPEDGFLGEESGARLP-----DARVLWVVDPIDGTSCFLN 103
                 567899****************88899999999.9****************************************.....777**************** PP

                 T-SG-EEEEEEEETTEEEEEEEEETTTTEEECEETTTEEEETCEEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCHEEE.BESSHHHH CS
  Inositol_P 102 gipqvaVsigllvegkpvlGviaqPllgqlysaakgkGaflngeklplsrappiseallvtlfavssrkdtseasllekvesavsaegvr.svgssalk 199
                 g   ++ s++++ +g+pv+Gv+++P + +l++a +g+Ga+ln+ +++ + a++ +e   v  + +s+r  + +  +l  +++++s+ g++ + gs+al 
  CTQ27017.1 104 GLHTWCLSLAIVADGEPVIGVVYDPNHRELFHALRGHGAWLNDAPIRPHPATTVKEG--VMGVGTSHRVTPAD--FLPFLQALLSDGGMFiRNGSGALM 198
                 *******************************************88888888855555..55788888888888..888888888888553388****** PP

                 HHHHHHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEEEEESSSC CS
  Inositol_P 200 laavaeGkadaylefgrekkWDhAAGeaileeaGGvvtdakge 242
                  a+ a+G++  y+e   +++WD  +G ++ +eaGG   d+  +
  CTQ27017.1 199 SAWAAAGRLIGYYEPH-MNPWDALPGLVLMREAGGASNDFLAQ 240
                 ****************.******************99887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2220.86
//
Query:       CTQ27018.1  [L=346]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-16   59.7   0.3    9.6e-16   58.5   0.2    1.7  2  Peripla_BP_3  Periplasmic binding protein-like domain
    1.7e-13   50.1   0.6    3.2e-13   49.2   0.6    1.5  1  LacI          Bacterial regulatory proteins, lacI family
    1.7e-12   47.3   0.0    2.6e-12   46.8   0.0    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    0.00072   19.9   0.2     0.0015   18.8   0.2    1.6  1  HTH_31        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.99   4.4e+03      23      45 ..      50      72 ..      33      79 .. 0.66
   2 !   58.5   0.2   2.1e-19   9.6e-16       6     165 ..     196     344 ..     190     345 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.99
                  -HHHHHHHHHHHHHHTTSSS-EE CS
  Peripla_BP_3 23 asasderergfrqaleelglpln 45
                  as s++ ++ + +a+e+lg+++n
    CTQ27018.1 50 ASVSEKTRQKVLSAAEALGYQVN 72
                  45555666666667777776666 PP

  == domain 2  score: 58.5 bits;  conditional E-value: 2.1e-19
                   HCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-S..EEEEESSCCHHHHHHHHHCCTT--T CS
  Peripla_BP_3   6 elGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalP..tAviaasDelAlgvlqalreaglrv 100
                   ++  r+++fig  + r++ + ++r+++f    ++  + ++ + +    ++a+  a++ l +     a++P  +A+++a+D lAlg+   lr+a    
    CTQ27018.1 196 RRSWRQVGFIG--ENRENFSTRQRYEAFIARTSDMAVSSRFCDG--GGYQAGYQAAREL-V-----AENPgmQALFCATDMLALGAQDGLRDAAAPL 282
                   555899*****..7888889999999998888886666665554..4444444444444.2.....2245448********************9988 PP

                   TTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GG CS
  Peripla_BP_3 101 PedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReS 165
                   P   +++gfdd++ a     +lTtv q+++ l++ a++ll+++++    p +++++p +l++R+S
    CTQ27018.1 283 P---AIVGFDDIPQADWQPYQLTTVQQNTALLAHHAVDLLMTRIARFSLPSRHREVPVKLIIRHS 344
                   8...8*****9999877777************************88888888888********99 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.6   7.2e-17   3.2e-13       3      46 .]      29      72 ..      27      72 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 7.2e-17
                HHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  3 kDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                 DVArlAGVS ++VSr      +Vse+tr++V+ a+e l+Y+ n
  CTQ27018.1 29 EDVARLAGVSRSAVSRTFTPGASVSEKTRQKVLSAAEALGYQVN 72
                5****************************************987 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   5.8e-16   2.6e-12       4     271 ..      86     341 ..      83     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 5.8e-16
                   EEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHHHHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EEEE CS
  Peripla_BP_1   4 lglvlpqldePffldlvkgitkaakehgvdvlllaageeedlakaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPcvip 100
                   +g+v +  d+Pf  +l++ +   ++  g++ ll++a++ ++la  +++l++  + g+ii++ ++  +   ++ +  ipv ++++ +d + g + v  
    CTQ27018.1  86 IGIVTAGFDNPFRSKLLAPLVHQLALNGFMPLLMNADDPQQLAPSLKQLLSYHVAGVIITSGAPPLSLAEEYLARKIPVTLINRHADLA-GCDRVCS 181
                   89999999*******************************************************9966666666668*************.******* PP

                   -HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHHHHHH CS
  Peripla_BP_1 101 ddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaalGavl 197
                   d+ q ++       ++  ++ +  +++++ +  +++r + f a   ++   v ++        ++++++a+ el  ++P ++a+ +  d  alGa  
    CTQ27018.1 182 DNAQGAKLVADLFSRRSWRQ-VGFIGENRENFSTRQRYEAFIARTSDM--AVSSRFCDG--GGYQAGYQAARELVAENPGMQALFCATDMLALGAQD 273
                   *9998888888888889999.********999999**99999999999..445554433..3699*****************************887 PP

                   HHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEE.EEE-HHHH....HHHHHHHHHHHH......-SEEEE--EEEE CS
  Peripla_BP_1 198 alkkeGrlkikeevdsfiesvvvydgLkkaqdtilels.plaviqlprellGrkasdmvlqki......nkerehprvlli 271
                   +l+ +     +          v++d +  +q+   +++ +l++ q +  ll  +a d ++  i       + re+p +l+i
    CTQ27018.1 274 GLRDAA-APLPA--------IVGFDDI--PQAD--WQPyQLTTVQQNTALLAHHAVDLLMTRIarfslpSRHREVPVKLII 341
                   777777.34444........5699999..5554..4432577777777999999999999999555554444555544444 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   3.4e-07    0.0015      15      58 ..      26      71 ..       9      76 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.4e-07
      HTH_31 15 LsqeevAerlgvsestlsrlEqGrrgrp...spavlealaralgldp 58
                ++ e+vA+++gvs+s +sr  +     +   +++ + ++a+alg ++
  CTQ27018.1 26 IKAEDVARLAGVSRSAVSRTFTPGA-SVsekTRQKVLSAAEALGYQV 71
                5789******************777.36566888********99665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2581.85
//
Query:       CTQ27019.1  [L=412]
Description: cytosine deaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-43  149.0   0.0    1.5e-34  120.3   0.0    2.0  2  Amidohydro_3  Amidohydrolase family
    1.7e-10   40.8   0.0    2.5e-10   40.2   0.0    1.3  1  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   2.9e-10   2.6e-06       3      55 ..      41      87 ..      40     105 .. 0.84
   2 !  120.3   0.0   1.7e-38   1.5e-34     167     472 ..     104     400 ..      88     401 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 2.9e-10
  Amidohydro_3  3 iDakGrlvlPGFvDsHtHlagggvnlrllrlpdarvtslegvltavrdqagtt 55
                  iDa+Grl +P+Fv++H+Hl+++         ++++++ + ++++ + ++  ++
    CTQ27019.1 41 IDAQGRLAIPPFVEPHIHLDATL------TAGEPEWNRSGTLFEGITRWSQRK 87
                  9*****************99997......777778999999999999998885 PP

  == domain 2  score: 120.3 bits;  conditional E-value: 1.7e-38
  Amidohydro_3 167 aalasyGitsv.eagggnvsslddleplfeltaeeklplrviikelldaaerlglplspgseeltigavklfadgvlgsrtalltepyftgwpdfed 262
                     l+ +G+++v +     + sl++l++l+++++e+    ++i+ ++++ +++  + ++ + +el  +a++++ad+v+g+++++ t+          +
    CTQ27019.1 104 GMLRDFGVQHVrTHVDVTDPSLAALQALLAVKQEA---ADLIDLQIVAFPQEGIESYP-NGRELMTRAIEMGADVVGGIPHYENTRD---------K 187
                   5556678888875556666699************9...89999999****99888888.9*************************95.........5 PP

  Amidohydro_3 263 ea..laelvaaadergldvaihaigdaavd.dvldafeaaaekngnqdrrrlehaegv...tesqiervaalqvaagvqpvfnf.edelldsrlg.p 351
                   ++  +  l+++a  +g  v++h+++ ++ + ++l+ +++ a+  g+   ++++h++++   ++++ +++ +l  a g+ +++ + e ++l++r++ +
    CTQ27019.1 188 GVssVMFLMDLAERYGRLVDVHCDEIDDPQsRFLEVLAEEARVRGMGAQVTASHTCAMgsyDNAYCSKLFRLLKASGINFISCPtESIHLQGRFDsW 284
                   556699***************************************************************************999************* PP

  Amidohydro_3 352 erargstpvkellnagvkvalgsDapvgpfdpwprigaavmrktrrgg.evlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvld. 446
                   +++rg+t+v+el +ag++v++++D   ++ dpw+++g  + ++    g +++ +    +l+ +l+ +T ++A+al l d+ ++L++G +A+l +ld 
    CTQ27019.1 285 PKRRGVTRVAELDRAGINVCFAQD---SIQDPWYPLGNGNILRILDAGlHICHMLGYDDLQRCLDFVTDNSARALCLGDN-YGLAEGRPANLLILDa 377
                   ************************...*****************98889******************************9.***************8 PP

  Amidohydro_3 447 .adpldvdppelaearvrltvvdGrvv 472
                    +d  +v  +    arv   + +Grv+
    CTQ27019.1 378 eNDYEAVRRQ----ARVLTSIRHGRVI 400
                   7555555554....6799999999986 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   2.8e-14   2.5e-10       2     342 ..      48     398 ..      47     400 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 2.8e-14
                   EEE-EEEEEEECETTECSSS....GHHHHH................STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH......HHHHHHHHHHT CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrga....tledwl................vppetaaealesgiktalksGtttvadmgattst......giealleaaee 72 
                    +P ++  H+Hl  +l  g+    +                     ++pe+ ++ + + i  +   G+  v+ +  +t++      ++ a++++a +
    CTQ27019.1  48 AIPPFVEPHIHLDATLTAGEpewnR----SgtlfegitrwsqrkasITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPslaalqALLAVKQEAAD 140
                   5799********9888877755551....15555666777799**********************************99999977777777776666 PP

                   SSSEEEEEEESSEGGSGCCCSHHHHHHHHHHHHHHHHHHCTTTCEE.EEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTT CS
  Amidohydro_1  73 lplglrilggkvsldrgsaetskasreklkagaaetikgkadgvvk.valapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafge 168
                   l ++l i++         ++  ++s+ + ++ + ++i   ad+v   ++     + ++s   +  ++++a++++  v++H+ e +  ++  ++  + 
    CTQ27019.1 141 L-IDLQIVAF--------PQEGIESYPNGRELMTRAIEMGADVVGGiPHYENTRDKGVS--SVMFLMDLAERYGRLVDVHCDEIDDPQSRFLEVLA- 225
                   3.58888866........34456666666666666677666666555666666666665..77789***************988888777777776. PP

                   TEEEETTTTSTCCHHTTTHCCEEEHCTCEEE..HH.HHHHHHHHHHHHCEE..HHHHHHHH...........SEHHHHHHHHHHHHTSCEEEEEECT CS
  Amidohydro_1 169 tiehgthlevaeslglldeiklilahgvhlt..pt.eaellkerlkeagva..hcpfsnsi...........lrsgrealrkaldeGvkvglgtDga 249
                     e+   +++++        ++++ h + +   ++     l + lk +g++  +cp++  +            r g+ +++++ ++G++v ++ D+ 
    CTQ27019.1 226 --EE-ARVRGMGA-------QVTASHTCAMGsyDNaYCSKLFRLLKASGINfiSCPTE--SihlqgrfdswpKRRGVTRVAELDRAGINVCFAQDSI 310
                   ..33.36666555.......55555555555553342333566677778884355544..445999999999***********999*********99 PP

                   .......TSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEE CS
  Amidohydro_1 250 .......asgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkviv 339
                          + gn l +l+ + + +   ++l y       +l ++l+++T n A+al l d+ G +++G++A+l ++d    ++++ + ++  v + i 
    CTQ27019.1 311 qdpwyplGNGNILRILDAGLHIC---HMLGY------DDLQRCLDFVTDNSARALCLGDNYG-LAEGRPANLLILDA--ENDYEAVRRQARVLTSIR 395
                   ******99999999988888888...33333......37999********************.************55..455555555555666666 PP

                   TTE CS
  Amidohydro_1 340 kGk 342
                    G+
    CTQ27019.1 396 HGR 398
                   665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3284.51
//
Query:       CTQ27020.1  [L=411]
Description: Transcriptional regulatory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-28   96.8   0.1    2.2e-27   95.6   0.1    1.7  1  PucR      Purine catabolism regulatory protein-like family
    7.9e-19   67.2   0.5    1.9e-18   66.0   0.5    1.7  1  HTH_30    PucR C-terminal helix-turn-helix domain
      2e-12   47.4   2.3    3.7e-12   46.5   0.6    2.3  3  GGDEF_2   GGDEF-like domain
    5.9e-07   29.2   0.3    2.3e-06   27.3   0.3    2.0  1  HTH_8     Bacterial regulatory protein, Fis family
    1.8e-05   24.6   0.2    0.00014   21.7   0.0    2.5  3  HTH_1     Bacterial regulatory helix-turn-helix protein, lysR
  ------ inclusion threshold ------
      0.029   14.2   0.2       0.42   10.5   0.0    2.9  3  HTH_23    Homeodomain-like domain
      0.043   14.1   3.5        3.7    7.9   0.4    2.7  2  TPR_12    Tetratricopeptide repeat
      0.092   12.7   0.0       0.41   10.6   0.0    2.2  1  HTH_11    HTH domain


Domain annotation for each model (and alignments):
>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.1   9.9e-31   2.2e-27       1     117 []       7     127 ..       7     127 .. 0.95

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 9.9e-31
        PucR   1 dllklpsleaakvvaGkagldrpVrwvhvlevpdiaellrggeLllttglalkddpealaelvrelaeagvaaLviklg.r...eipeelieaadelgl 95 
                 +ll+l+ l+a+++ aGk+gl+r Vrw +v+e + iae++ ggeL+++tg++ ++d+++l +l+ e +++g+a++vi +g +   +ip+ li++adelg+
  CTQ27020.1   7 ELLALEGLSALRLRAGKQGLQRAVRWYYVAENEHIAEWIMGGELVFITGINHPRDEANLIQLLMEGKQRGIAGMVILTGeAyihAIPATLIALADELGM 105
                 699*****888*****************************************99************************962566*************** PP

        PucR  96 Plielpeevpfveiieevleai 117
                 Plie p+ +++v ++e++ +a+
  CTQ27020.1 106 PLIEQPYLLKMVIVTERIGTAL 127
                 ****************998875 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.5   8.4e-22   1.9e-18       1      58 [.     341     398 ..     341     399 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 8.4e-22
                 ...HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHH CS
      HTH_30   1 LleTLraylenggnisatAkaLhvHrnTlryRLrrieellgldlddpddrlaLylAlr 58 
                 LleTL++ l+++gn+ ++A++L++HrnTl++R++rie+l+g++++ p+  l+ ++Al 
  CTQ27020.1 341 LLETLETLLQENGNVVRAADRLGLHRNTLHQRIQRIEKLTGYPVSHPQFHLNASVALV 398
                 89*****************************************************996 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.1   4.6e+03      35      79 ..      24      68 ..      16      75 .. 0.69
   2 ?   -3.4   0.0       4.9   1.1e+04       8      28 ..      96     118 ..      93     141 .. 0.59
   3 !   46.5   0.6   1.7e-15   3.7e-12       2     116 .]     147     288 ..     146     288 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.1
     GGDEF_2 35 erllraleealralgpdalvavrgdrlvlllpaedeedaealler 79
                + l+ra++ +  a + ++   + g++lv++   ++++d + l++ 
  CTQ27020.1 24 QGLQRAVRWYYVAENEHIAEWIMGGELVFITGINHPRDEANLIQL 68
                556666666666666666667788999999998888887766655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.9
     GGDEF_2   8 llerarrlgldl.dgpyvv.vvi 28 
                 l++ a +lg++l ++py+  +vi
  CTQ27020.1  96 LIALADELGMPLiEQPYLLkMVI 118
                 67788888888514455543344 PP

  == domain 3  score: 46.5 bits;  conditional E-value: 1.7e-15
     GGDEF_2   2 grsde..ellerarrlgldldgpyvvvviel...............eedaer........llraleealralgpdalvavrgdrlvlllpaedeedae. 74 
                 g+ ++   l++ra + +ld ++p + ++++l               e    +        ++++l+++l ++g ++ + +r++ + +llp e+ e  + 
  CTQ27020.1 147 GDYPDlqMLHQRALHQQLDYTRPLRLAALRLeglsrlfrqfppeqaE----AwllqahrsVRQQLQQQLNQQGNSFPLLERSNMFLFLLPDEEGEGFQq 241
                 66444478999********************9999999888754431....34444444599*******************************877556 PP

     GGDEF_2  75 .allerlarrlgg....lsvriGiGspveglaglrrSyreArrAlrl 116
                  ++l++++++l++    ls+ +G++ pv++l+g++r++ +Ar+Al+l
  CTQ27020.1 242 kKWLQQWLQALADgeesLSLLCGLSAPVRQLQGYPRALSQARQALDL 288
                 69999999999999999****************************86 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.3     1e-09   2.3e-06      12      41 ..     346     375 ..     344     375 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1e-09
                 HHHHHTTT-HHHHHHHHTS-HHHHHHHHHH CS
       HTH_8  12 aALertgGnkskAArlLGisRrtLyrKLkk 41 
                 ++L + +Gn+ +AA++LG++R+tL+ ++++
  CTQ27020.1 346 ETLLQENGNVVRAADRLGLHRNTLHQRIQR 375
                 67888899*******************997 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         1   2.2e+03      34      47 ..      96     109 ..      91     117 .. 0.83
   2 ?   -2.7   0.0       2.7   6.2e+03      37      48 ..     207     223 ..     201     226 .. 0.53
   3 !   21.7   0.0   6.3e-08   0.00014       4      44 ..     342     383 ..     339     388 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1
                 HHHHHHHHTS-SEE CS
       HTH_1  34 ikrLEeelgvpLfe 47 
                 + +L +elg pL+e
  CTQ27020.1  96 LIALADELGMPLIE 109
                 55788999999998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.7
                 HHHHHTS-.....SEEE CS
       HTH_1  37 LEeelgvp.....LfeR 48 
                 L ++l+++     L+eR
  CTQ27020.1 207 LQQQLNQQgnsfpLLER 223
                 44444444444447777 PP

  == domain 3  score: 21.7 bits;  conditional E-value: 6.3e-08
                 HHHHHHHHHHS.SHHHHHHHHTS-HHHHHHHHHHHHHHHTS- CS
       HTH_1   4 lrlfvavaeeg.sftrAAeeLglsqpavsrqikrLEeelgvp 44 
                 l++++++ +e  ++ rAA++Lgl   ++ ++i+r E++ g p
  CTQ27020.1 342 LETLETLLQENgNVVRAADRLGLHRNTLHQRIQRIEKLTGYP 383
                 677777665544*************************99876 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.54   1.2e+03      33      49 ..     244     259 ..     242     260 .. 0.74
   2 ?   -3.1   0.0       3.4   7.7e+03       9      25 ..     284     300 ..     283     301 .. 0.84
   3 ?   10.5   0.0   0.00019      0.42      16      41 ..     351     376 ..     342     383 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.54
      HTH_23  33 TvyrwlkryreeGlegl 49 
                 ++++wl++  ++G e+l
  CTQ27020.1 244 WLQQWLQAL-ADGEESL 259
                 577888886.7888876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.4
      HTH_23   9 rillllaeGlsvreIAr 25 
                 ++l l++   ++++I++
  CTQ27020.1 284 QALDLCDTLRPTQRISD 300
                 78999999999999986 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00019
      HTH_23  16 eGlsvreIAreLgvsrrTvyrwlkry 41 
                 e  +v ++A++Lg +r+T+ + ++r 
  CTQ27020.1 351 ENGNVVRAADRLGLHRNTLHQRIQRI 376
                 4667889*************999885 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.4    0.0016       3.7      16      74 ..     146     202 ..     141     205 .. 0.86
   2 ?    6.3   0.2    0.0052        12      30      75 ..     245     289 ..     241     291 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0016
      TPR_12  16 lgrydeAlellekaleiarrllGpdhpltattlrnLgrl.yralgryeeAlelleealai 74 
                  g+y + + l+++al ++   l+ ++pl +++lr  g   ++++  +e+A+++l +a + 
  CTQ27020.1 146 TGDYPDLQMLHQRALHQQ---LDYTRPLRLAALRLEGLSrLFRQFPPEQAEAWLLQAHRS 202
                 69999999******8888...678899999999999999667999***********9876 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0052
      TPR_12  30 leia.rrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 l+++ ++l   d ++ ++ l++L+   r+l  y  Al+  ++al+++
  CTQ27020.1 245 LQQWlQAL--ADGEESLSLLCGLSAPVRQLQGYPRALSQARQALDLC 289
                 56675666..78899999999999999*****************998 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00018      0.41      22      46 ..     359     384 ..     341     386 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
      HTH_11  22 AeeLnvSrrtvrrdIkaLeelg.vpI 46 
                 A++L++ r t +++I+++e+l  +p+
  CTQ27020.1 359 ADRLGLHRNTLHQRIQRIEKLTgYPV 384
                 89****************87654776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3050.85
//
Query:       CTQ27021.1  [L=420]
Description: Cytosine/purine/uracil/thiamine/allantoin permease family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-12   45.5  43.6    6.4e-12   45.0  43.6    1.2  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0  43.6   3.6e-16   6.4e-12      12     415 ..      21     384 ..      12     407 .. 0.75

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 3.6e-16
  Transp_cyt_pur  12 lnlfsiWlganlnint.wvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvviaivwfgvqa 105
                     + +++++++  + + t ++ g lg+++  +  + + + ++gn ++a + a+lg + a+ Gl++ ++ R+ fG +gs l  ++++++ ++w++   
      CTQ27021.1  21 FSIAMVLFSFTFFTGTmFAGGKLGVSF--SIVNLLWIAVIGNALLALYAASLGWIAARSGLNTVLMGRFCFGEIGSKLADFILGFAELGWYA--- 110
                     455666666665555504455555777..99************************************************9999*********... PP

  Transp_cyt_pur 106 wiGsealllmlgkifgkwleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaegGpvldkavklgks 200
                       G +++++ l ki      ++    +++   +v f i   v++++ + g +++ +++v  ++++ +++    ++++    gG  +    +++  
      CTQ27021.1 111 -WGTATVAISLVKILA----LP---EALTQPLMVLFGILFCVTALVGYKGLDALSRLSVPLMFVLLIVS----MYLALHHAGGWQAMTRIAPS-- 191
                     .677777777777744....67...67888888888888888888888888888888888877777775....44444444444444334444.. PP

  Transp_cyt_pur 201 e..lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdetagvllililval 293
                     +     +a++ v + fa+ ++ a  +tr a++ + +++  + ++ +++ l++++g+  a + +    a++ ++l     +++  g+ +++++++ 
      CTQ27021.1 192 DtmTWSAAITMVFGTFASGATQATNWTRLANSSRTAILASMGSFLIGNGLMIVAGAWCAIVYQQ---ADIVEVL-----ILQ--GLSVAAVIMLC 276
                     333567889999999999999999************9999999999999988877666665555...5555556.....222..46778888888 PP

  Transp_cyt_pur 294 aqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllssssklftaflsllavflspvagviiadyfvvrrgylklaalytrrr 388
                      +l++++   ++     +  ll     +++ +l+aa +++v ++  +++    + ++fl ll+ ++ p+ gvi+ady++ r g++ l +  +   
      CTQ27021.1 277 LNLLTIQGPTIYNVSAAACHLLR-SERRRTLTLAAAGVGIVLAIGGMYE----MLIPFLVLLGSIIPPIGGVILADYWFARGGRYPLLQNAR--- 363
                     89999998888887766666666.5566667777777777777777775....6999***************************99888777... PP

  Transp_cyt_pur 389 gsaYwyrkgvNwravaayivGiaaglv 415
                              +Nw  + ay++G++++ +
      CTQ27021.1 364 ------LPRFNWLGLGAYAAGAVVAYL 384
                     ......345566666666666555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3240.24
//
Query:       CTQ27022.1  [L=202]
Description: Methylthioribulose-1-phosphate dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-40  137.7   0.0    4.5e-40  137.6   0.0    1.0  1  Aldolase_II    Class II Aldolase and Adducin N-terminal domai
  ------ inclusion threshold ------
      0.089   12.0   0.0       0.13   11.5   0.0    1.1  1  RuBisCO_large  Ribulose bisphosphate carboxylase large chain,


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.0   5.1e-44   4.5e-40       2     185 ..       8     194 ..       7     195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 137.6 bits;  conditional E-value: 5.1e-44
                  HHHHHHHHHHHTTSSCTTBCEEEEEETSTTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEECECSSSTB-TTHHHHHHHHHH-TT-SEEEEE--HHHH CS
  Aldolase_II   2 elaeasrllarrglvegtgGniSvrvpeedsflitpsgvdfeeltaedlvvvdldsgevvegkekggkpssetplHlaiykarpdaravvHtHspaav 99 
                  +l++++++++++g++ +tgGn+Svr + ++  +   sg+d++ lt ed++ v++ +++++    +g+kps+et lH+ +y+ +p+a++v+H+H+ +a+
   CTQ27022.1   8 QLVTTCHWIGAKGWAPATGGNMSVRQD-DTWCWLSESGRDKGSLTTEDFLQVEIATNQAP----SGRKPSAETGLHTLVYRLFPEANVVLHVHTVNAT 100
                  79***********************77.66777*********************967777....4689****************************** PP

                  HHHTCCSTSCHCCSSHHHHC.HSS.....SEEEE..ES-SSTTCHHHHHHHHHHHH.H.S-SEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHH CS
  Aldolase_II 100 alsalagkeglppltqeaaklllg.....devpv..ipyaapgteelgealaealk.e.dakavllrnHGlltvGetleeAvalaetleeaaeiq 185
                  +ls + + ++l    +e++k l g     d+vp+  +++ + + ++l++++a+  + +  + + llr+HGl+++G++++eA +++e le+++e+ 
   CTQ27022.1 101 VLSRIEKSDTLALQGYEMQKTLSGqhshlDTVPIaiFDNDQ-DIDALAARIADYAQtRpLRYGFLLRGHGLTCWGKDIQEARRQLEGLEFLFECE 194
                  ***98877777667777777555578888666663377777.88888999999888535556******************************986 PP

>> RuBisCO_large  Ribulose bisphosphate carboxylase large chain, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.4e-05      0.13     126     205 ..      80     158 ..      73     168 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.4e-05
                    HHHHHSTTS..EEEEE-TTTHHHHS.T--SEE-HHHHHHHHHHHT-SEEE---TTSSSBS--GG......GHHHHHHHHSS CS
  RuBisCO_large 126 slrkafrknelllHlHraghgaltr.qskhGisfrvlakllRLlGvdhlhtgtvgvgklegdesvvkgfkdtlrekmleed 205
                     + + f++ +++lH+H+    +l+r +++  + ++ +     L+G +h h +tv +  +++d++ + +   ++ ++  ++ 
     CTQ27022.1  80 LVYRLFPEANVVLHVHTVNATVLSRiEKSDTLALQGYEMQKTLSG-QHSHLDTVPIAIFDNDQD-IDALAARIADYAQTRP 158
                    466889*******************77777777777776666666.799*****9999999999.8888877777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1636.98
//
Query:       CTQ27023.1  [L=498]
Description: putative carbohydrate kinase, FGGY [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-53  180.0   0.0    8.4e-53  179.4   0.0    1.3  1  FGGY_N       FGGY family of carbohydrate kinases, N-terminal 
    5.8e-29  101.2   0.7    8.7e-29  100.7   0.7    1.3  1  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
  ------ inclusion threshold ------
       0.17   11.3   0.0       0.27   10.7   0.0    1.4  1  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.4   0.0   1.4e-56   8.4e-53       2     245 .]       4     249 ..       3     249 .. 0.98

  Alignments for each domain:
  == domain 1  score: 179.4 bits;  conditional E-value: 1.4e-56
                 EEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE-TT- CS
      FGGY_N   2 ilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynailwkd 100
                 +lg+D+Gt+ +ka+++d++ +  asa ++       +g+aeqd+ ++w+++ + +r++ ++  +++   +aIg +gq+eg+ l D++++p+++ ilw+d
  CTQ27023.1   4 YLGIDIGTSRVKAVLFDQHFTACASAAENTSPRLSANGYAEQDMTQLWHSVLAILRQIARHPALQAGRLRAIGLAGQGEGVWLSDEQGEPVGPGILWSD 102
                 89************************************************************************************************* PP

                 -TTHHHHHHHHH.TTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-HHHHHHTT- CS
      FGGY_N 101 rrtaeiveklke.egnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnikklewdeellailgi 198
                 +r+ e +  l +  g   + ++ tg+ l++ +t   l Wlk+ +p ++++++   + +d++++rLtg+ + + t+as s l+n +++ w+  +++ +g+
  CTQ27023.1 103 TRSHELMSDLLRrPGFDRRYFADTGTHLQPCNTSLQLYWLKQYQPARLAAARYLFFAKDWIRFRLTGVAALELTDASSS-LLNQQTGSWSSVVMNEMGL 200
                 *******9887769***************************************************************76.78***************** PP

                 -GG..GS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 199 pee..lLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 +e   l+P+l+ + + +g+l + +aa +Gl + +pv++g+ D+ +aalG
  CTQ27023.1 201 NELlpLFPPLLAPDAPAGTLSDAVAALTGLPAATPVAAGALDVCSAALG 249
                 **999******************************************98 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.7   1.4e-32   8.7e-29       2     197 ..     259     439 ..     258     440 .. 0.86

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 1.4e-32
      FGGY_C   2 kvslGTssflll..vgtkpv.isehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpafsg 97 
                 + +lGT+++ ++   g++ v +++ +++++ a     ++  l+  +a + ++ +wl++       i+ +++  ++l++ a a+ ++ +ggv+  p+++g
  CTQ27023.1 259 YTILGTTCCTGIvcRGPQTVnEATRFVTHTEA----GQVISLFPMQAGTPNI-DWLQQH------ISLDADL-GRLEQ-AIAAVEPGSGGVFWQPYLNG 344
                 5789********76777777555555555555....6899999999999999.****99......5557776.78884.444777888999999***** PP

      FGGY_C  98 lrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkp.ldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAa 195
                 +rap++ pdar+ ++g+s +tt a++ rA++e++a++   i++al  + g p   +l+++GGg+ +  ++q++Ad++g++V+  + +e  a GaAilAa
  CTQ27023.1 345 ERAPFYSPDARAGFFGISPHTTRAQLQRAVFEGLAFA---IVDAL--Q-GYPqGGELYLTGGGAASATWLQIIADCTGRTVVSSAFNELSARGAAILAA 437
                 ************************************7...67777..3.556589*******************************************9 PP

      FGGY_C 196 va 197
                  +
  CTQ27023.1 438 RS 439
                 75 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.4e-05      0.27       1      69 [.       5      79 ..       5     154 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.4e-05
                 EEEEE-SSEEEEEEEETTTEEEEEEEE--......TTS-HHH.........HHHHHHHHHHT--GGGECEE..EE CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlgrgitns......anlesvrfeaaekvleealtealerageeeadieetylvg 69
                 +GiD+G++ +kavl+d+     + +  n+      + + + + ++ + ++  +l+++ +   +++  ++ + l g
   CTQ27023.1  5 LGIDIGTSRVKAVLFDQHFTACASAAENTsprlsaNGYAEQDMTQLWHSVLAILRQIARHPALQAGRLRAIGLAG 79
                 8***************99887777776664555544445555555555555555555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3957.16
//
Query:       CTQ27024.1  [L=359]
Description: putative D-3-phosphoglycerate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-56  190.6   0.0    4.1e-55  185.9   0.0    2.2  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      7e-19   67.8   0.0    8.8e-19   67.5   0.0    1.1  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    1.4e-06   28.6   0.0    3.3e-06   27.4   0.0    1.6  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
    0.00015   21.9   0.0    0.00034   20.7   0.0    1.5  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
     0.0026   17.3   0.0     0.0066   16.0   0.0    1.7  2  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
  ------ inclusion threshold ------
       0.01   16.3   0.6      0.038   14.5   0.0    2.3  3  XdhC_C         XdhC Rossmann domain
       0.03   14.8   0.1       0.18   12.3   0.0    2.1  2  NAD_binding_7  Putative NAD(P)-binding
       0.44   10.6   1.9        8.7    6.4   0.1    3.0  3  Ldh_1_N        lactate/malate dehydrogenase, NAD binding doma


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.9   0.0   1.8e-58   4.1e-55       1     178 []     125     327 ..     125     327 .. 0.92

  Alignments for each domain:
  == domain 1  score: 185.9 bits;  conditional E-value: 1.8e-58
                   HHHHHHHHTTHHHHHHHHHTTCC.........................HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHH CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregew.........................ksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkke 72 
                   l+l+l+l+r++++ ++++++ge+                         +  + ++g+el++kt+G++G+G+IG++va++++afgm v+++d++  +e
    CTQ27024.1 125 LGLMLSLARHIPQSHAALKRGEFtqadnaaaatqqglrrdvvwdvspeSPYEVFKGSELRNKTLGLVGYGNIGRRVARIARAFGMAVLVVDPFVAAE 221
                   589******************999888888776666665555554443333489999************************************9988 PP

                   HCHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHH.HHS CS
  2-Hacid_dh_C  73 eeeeelgvelvsleellaesDivslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspl.lel 168
                   +  +e g+++++le+l++e+Divslhl   p+  +l+na+ l++mk+ga+liNt+R+++vde+aL++aL+ g ++gaalDv+  epl +d+p+ +e+
    CTQ27024.1 222 D-INEPGLQKTTLEALFREADIVSLHLSSGPHSDGLVNAALLNSMKPGALLINTSRAAVVDEAALIDALRHGPLGGAALDVYHREPLWRDHPFvIEF 317
                   7.9999***************************************************************************************899* PP

                   TTEEE-SS-T CS
  2-Hacid_dh_C 169 pnviltPHia 178
                   +nvi+tPHia
    CTQ27024.1 318 DNVIITPHIA 327
                   *********8 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   3.9e-22   8.8e-19      27     129 ..      50     354 ..      20     358 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 3.9e-22
                 CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH....................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................... RF
  2-Hacid_dh  27 ellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt....................... 102
                 +l+  +l+e a+da++l++ +   vt++v++a+p+L+via+  +   n+D +aa++rGi V  +pg +++++AElt                       
  CTQ27024.1  50 KLSAGQLIELAHDAEVLVTSYDE-VTDAVMAACPRLQVIACTRANPVNIDTQAAQARGIRVLYTPGRNADAAAELTlglmlslarhipqshaalkrgef 147
                 778889***********999987.*************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  CTQ27024.1 148 tqadnaaaatqqglrrdvvwdvspespyevfkgselrnktlglvgygnigrrvariarafgmavlvvdpfvaaedinepglqkttlealfreadivslh 246
                 *************************************************************************************************** PP

                 .................................................................................T-BHHHHHHHHHHHHHHH CS
                 .................................................................................xxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 .................................................................................aaTeeaqeniaeeaaenl 120
                                                                                                  +aT+e++ +  +++a  l
  CTQ27024.1 247 lssgphsdglvnaallnsmkpgallintsraavvdeaalidalrhgplggaaldvyhreplwrdhpfviefdnviitphiaGATRESIAKHTAMIAADL 345
                 *************************************************************************************************** PP

                 HHHHTTCCG CS
                 xxxxxxxxx RF
  2-Hacid_dh 121 vaflkgesp 129
                  ++++ge++
  CTQ27024.1 346 QRYVAGEPL 354
                 ******986 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.5e-09   3.3e-06       2     103 ..     188     288 ..     187     294 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.5e-09
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstssped 96 
                    +g++G G++G+  a+   + g+ v v++    ++e++ + g+   +++e+l++++d+v + +++g++ d +++  ll+++k+g++li++s +++ d
     CTQ27024.1 188 LGLVGYGNIGRRVARIARAFGMAVLVVDPF-VAAEDINEPGL-QKTTLEALFREADIVSLHLSSGPHSDGLVNAaLLNSMKPGALLINTSRAAVVD 281
                    79**************************66.56677777776.6789999***********************99***************999888 PP

                    HHHHHHH CS
  NAD_binding_2  97 trelake 103
                       l ++
     CTQ27024.1 282 EAALIDA 288
                    7776655 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.5e-07   0.00034      24     109 ..     186     274 ..     181     289 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.5e-07
                    SEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCT.T-EE--HHHCTTT-SEEEE..-SS..SSSSB-HHHHCCS-TTEEEEE- CS
  AdoHcyase_NAD  24 kvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaame.Gfevvtleevvkkadivvt..ttG..nkdiitlehlkkmkddaivcni 109
                    k+  ++GyG++G+  a+  +++G  v+v  vdP  a   + e G++ +tle + ++adiv    ++G  ++ ++++  l++mk  a++ n 
     CTQ27024.1 186 KTLGLVGYGNIGRRVARIARAFGMAVLV--VDPFVAAEDINEpGLQKTTLEALFREADIVSLhlSSGphSDGLVNAALLNSMKPGALLINT 274
                    777789******************9998..8**9998877766****************85411344224568999999999999998886 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.4   5.4e+03      83     101 ..      49      67 ..      48      81 .. 0.63
   2 !   16.0   0.0     3e-06    0.0066       2      91 ..     183     271 ..     182     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.4
                 GG--TT-EEEESSSHHHHT CS
        IlvN  83 pnlkegkalafahGfnihf 101
                 p+l++g+ +  ah  ++  
  CTQ27024.1  49 PKLSAGQLIELAHDAEVLV 67 
                 6777888888888766644 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 3e-06
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HH.HHHHHHHHHTGGG--TT-EE CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliPDe.lqkevyeeeiepnlkegkal 91 
                 l++k++ ++GyG+ G+  a+  r  g+ v v        ++  +e g++ +t++ + ++ad+v + +    + + ++++++ +++k g+ l
  CTQ27024.1 183 LRNKTLGLVGYGNIGRRVARIARAFGMAVLVVDPFV--AAEDINEPGLQKTTLEALFREADIVSLHLSSGpHSDGLVNAALLNSMKPGALL 271
                 789**************************9975554..58999********************9866544044456677777777777665 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.5     1e+04      46      63 ..      18      35 ..       9      38 .. 0.79
   2 ?   -1.6   0.2       1.7   3.7e+03      14      40 ..      57      82 ..      52     159 .. 0.56
   3 ?   14.5   0.0   1.7e-05     0.038       2      45 ..     189     261 ..     188     297 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.5
                EEEE--S-HHHHHHHHHH CS
      XdhC_C 46 avvvlthdhklDaealea 63
                + +v t +h+ D  a ++
  CTQ27024.1 18 MKIVFTAEHAGDLSAFHQ 35
                568899999999988876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.7
                HHHHHHHTEEEEEEES-GGGG-GGG-T CS
      XdhC_C 14 arlaaalgfrvtvvdpreefatkerfp 40
                ++la+ +++ vt +d+ ++ a  +  p
  CTQ27024.1 57 IELAHDAEVLVTSYDEVTD-AVMAACP 82
                5555555555555555554.2222222 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 1.7e-05
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG...........-GGG-TT-SE..........................- CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa...........tkerfpeade..........................t 45 
                  ++G g++++ +ar+a+a+g+ v vvdp  +++                    e                           
  CTQ27024.1 189 GLVGYGNIGRRVARIARAFGMAVLVVDPFVAAEdinepglqkttL--------EalfreadivslhlssgphsdglvnaaL 261
                 589*************************98755444444443331........0444444323333333333333333330 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.81   1.8e+03      67      83 ..      66      82 ..      45     108 .. 0.64
   2 ?   12.3   0.0   7.9e-05      0.18       5      70 ..     183     248 ..     181     281 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.81
  NAD_binding_7 67 aatddrelneriaeaak 83
                    +t+ +e+ +++++a+ 
     CTQ27024.1 66 LVTSYDEVTDAVMAACP 82
                   34455555555555554 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 7.9e-05
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeeelekdlegadlviaatd 70 
                    l++k+  +vG G+++ r +r   ++g  v vv+p v++e  +   l++++le+ + +ad+v    +
     CTQ27024.1 183 LRNKTLGLVGYGNIGRRVARIARAFGMAVLVVDPFVAAEDINEPGLQKTTLEALFREADIVSLHLS 248
                    8999***********999999999***********7443333333666666555555555544433 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0039       8.7      99     130 ..      71     104 ..      62     108 .. 0.77
   2 ?   -4.0   0.1       6.6   1.5e+04       5      18 ..     190     202 ..     189     213 .. 0.76
   3 ?    2.3   0.0     0.075   1.7e+02      24     100 ..     278     344 ..     266     352 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0039
                 HHHHHHHHHHT..TTSEEEE-SSSHHHHHHHHHH CS
     Ldh_1_N  99 keiveaiakva..pnaivlvvsNPvdiltevlkk 130
                  e+++a+++ +   ++i +  +NPv+i t++++ 
  CTQ27024.1  71 DEVTDAVMAACprLQVIACTRANPVNIDTQAAQA 104
                 5788999999933355666778*******99875 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6.6
                 EETTTSHHHHHHHH CS
     Ldh_1_N   5 vvGaaGgiGqslal 18 
                 +vG  G+iG  +a 
  CTQ27024.1 190 LVGY-GNIGRRVAR 202
                 6888.999988875 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.075
                 TSSSEEEEE-SSHH.HHHHHHHHHHHCHCCSTS-EEEEESSGGGGTTESEEEE--S-SS-TTTTHHHHHHHHHHHHHH CS
     Ldh_1_N  24 kladelaLlDiake.kleGvaldlshistflsvkvkvsekeeealkdadvvvitagvprkpGetRddLlkvNakIvke 100
                  ++de aL+D+ ++  l G ald+ h +            ++  + + d v+it   p   G tR+   k +a I ++
  CTQ27024.1 278 AVVDEAALIDALRHgPLGGAALDVYHREPLW--------RDHPFVIEFDNVIIT---PHIAGATRESIAKHTAMIAAD 344
                 6677788888777766777788887766544........223333344445554...455555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2895.52
//
Query:       CTQ27025.1  [L=313]
Description: putative kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-44  151.5   0.0    3.6e-44  151.3   0.0    1.0  1  PfkB          pfkB family carbohydrate kinase
     0.0017   17.8   0.0     0.0029   17.0   0.0    1.4  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.3   0.0   4.1e-48   3.6e-44       5     297 ..       7     296 ..       4     301 .. 0.88

  Alignments for each domain:
  == domain 1  score: 151.3 bits;  conditional E-value: 4.1e-48
                 EEEEEEEEEEEEECSSH...TTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTT CS
        PfkB   5 vviGealidliavsekl...egelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvded 100
                 v +G+++ d+ +        +g +   ++++  ++G +a    ++a+lg+++a++ ++G D+ ++f+l++ +  g+d++ +++++ ++t+ +++ +  +
  CTQ27025.1   7 VFVGLTILDIAGRPVVAippRGGVAFIEQIRLNPAGTAAGANINAAKLGIRTAAVACLGEDEKADFILASYARLGIDCSLIQRTALKETSATILPIRPN 105
                 56666666665554443465555558899********************************************************************** PP

                 SEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEES..EECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEEEHHHHHHH CS
        PfkB 101 gertivfnrgaaadltkeeleededlleeadllyisg..llsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkpneeEleal 197
                 ger  + +rga+ +l  +e     d++    +l+ +g  ll + +   + ++l++a+  g t    l +p ++ ++e l+ ll+ +d++ p+ eE+++l
  CTQ27025.1 106 GERPALHCRGASDALFVSE--AEFDAVLDCRFLHHGGtgLLAAMDQGQSARLLQAAKARGVTTSFDLIAPNEE-TLELLRPLLPSVDYFMPSLEEAAFL 201
                 *****************75..599**************99999999999999999999999855557777777.79*********************** PP

                 HTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSSS CS
        PfkB 198 tgekledieealaalhklkakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqkkgai 296
                 +ge+  ++e + +      a g+ t + + G++G+++  +dg  ++ a ++v++vDttG GDs++ggf+aal++g s++ a+  a+avAalv++ +g+ 
  CTQ27025.1 202 SGET--QPEAIGRFFL---ALGVGTCILKDGENGSWLIGRDGGPQHIAPWPVEAVDTTGCGDSYCGGFIAALARGLSVKAACDVASAVAALVATGMGSD 295
                 ****..7766666655...58******************555555555599*******************************************99986 PP

                 T CS
        PfkB 297 a 297
                 a
  CTQ27025.1 296 A 296
                 5 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.3e-07    0.0029     106     226 ..     175     283 ..     164     298 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.3e-07
                   HHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEE.TSSEEEEEEEE----S--BTHHH CS
  Phos_pyr_kin 106 eeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvly.dgeeveeleaerietknthGtGC 201
                   ee++e+l+  Llp ++   P l+Ea+ L+g     e++ ++ ++ +l+lg+ + ++k g+   + +    +l+ ++++ +++    +e  +t G G+
    CTQ27025.1 175 EETLELLRP-LLPSVDYFMPSLEEAAFLSG-----ETQPEAIGRFFLALGVGTCILKDGE---NGS----WLIgRDGGPQHIAPWPVEAVDTTGCGD 258
                   456666665.*******************9.....78899999***************98...344....5777555555555555666******** PP

                   HHHHHHHHHHHCTSSHHHHHHHHHH CS
  Phos_pyr_kin 202 tlssaiaaelakgesleeAvkkAke 226
                   ++     a la+g s++ A + A +
    CTQ27025.1 259 SYCGGFIAALARGLSVKAACDVASA 283
                   *******************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2534.70
//
Query:       CTQ27026.1  [L=334]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-35  120.4  35.6    7.2e-35  120.4  35.6    1.3  2  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.2      0.35   6.3e+03     133     144 ..      27      38 ..      11      42 .. 0.46
   2 !  120.4  35.6     4e-39   7.2e-35       3     268 .]      53     320 ..      51     320 .. 0.92

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.35
  BPD_transp_2 133 vivllalllvla 144
                    + +++ll++++
    CTQ27026.1  27 GFGVITLLAIAL 38 
                   222333333333 PP

  == domain 2  score: 120.4 bits;  conditional E-value: 4e-39
  BPD_transp_2   3 lnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvglt 99 
                   +nll  +ail+i+A++++l++  aG i+l++g ++ +Ga  a+++l+ ++ ++ +a+  all+g+++gll+++l+l  +++++++tl++ +++    
    CTQ27026.1  53 ANLLQGSAILLIVAMAMTLIV-SAGAIDLSVGVALDFGAAFALVALKTWHLPWQAAVGCALLGGVLIGLLNAFLILICRIRPFLATLGTWFIASSAE 148
                   689999***************.*****************************999**********************************999999998 PP

  BPD_transp_2 100 lllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaGal 196
                     ++t + + ++  +  +e  + a   l  +    v+++l+l la++l+  rt +G  +ra+g+n eaar +Gi+ + + l + v ++al ++ G++
    CTQ27026.1 149 R-IYTDGGGAIAYRRMAPEYHDLAVGNLGGIPTP-VAIVLALWLAAWLVTERTLWGKYVRAIGQNSEAARIAGIRDRLTMLGVLVAASALCAVGGVI 243
                   8.55555555555555555666666655555543.36889999****************************************************** PP

  BPD_transp_2 197 lalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   l++ l    p +g+ + ++aiaav++G a       s+lgt+ G l ++++++ +l+l+g +  ++++l+g++l+++l
    CTQ27026.1 244 LSANLRQFTPLAGQSYLMDAIAAVFIGTAftrlgrVSILGTLGGVLFLAIIDN-GLNLMGLNYLVKDALVGVILVVAL 320
                   *****************************************************.99999999*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2482.93
//
Query:       CTQ27027.1  [L=329]
Description: putative ABC-type sugar transport system permease component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-27   95.6  33.3    4.4e-27   94.9  33.3    1.3  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9  33.3   2.5e-31   4.4e-27       5     268 .]      48     317 ..      44     317 .. 0.84

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 2.5e-31
  BPD_transp_2   5 lltlaailaiaAlGlalvfg......iaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvl 95 
                   +l+++ +lai+  Gl  v+       ++G+i+l+  + ++lG  +  l la ++ + ll+l++  +v++++g+++gllvl  ++++l++tl +++++
    CTQ27027.1  48 MLVQSVPLAILCFGLVCVIAvggddvVSGGIDLSLPATAVLGVALLSLGLAEWHTPYLLLLALLAAVCLLCGAINGLLVLAAGLPPLLATLSTSVAF 144
                   55666666666666655553112222369*************99999999999999999999999******************************** PP

  BPD_transp_2  96 vgltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAgl 192
                   +glt  lltg+ +   + + +++  +++   l++      + +l + +++ +ll+++rfG ++ avg+n+++a+++G+nv+r++ll+++++g+ Agl
    CTQ27027.1 145 TGLTD-LLTGQRRIAVSDPLMVAFRDNSVLGLPWP----LVYLLGVFILFQFLLHHSRFGQHVQAVGGNRDMAQMSGLNVRRLTLLVWLLAGIAAGL 236
                   *****.56666555555555555555555555555....599999**************************************************** PP

  BPD_transp_2 193 aGallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   a + l  +  +++  + ++l +++++a ++G a       ++ g+++Ga+++ ++++ +l llg++  +  ++ g l+++vl
    CTQ27027.1 237 AILPLLSQGSGSSSGTATPLLLETVLATFIGAAfsrrrvVTIWGALLGAILVNALSN-GLGLLGVNIFWMGAIKGGLILVVL 317
                   96655555555555*******************************************.999999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2327.65
//
Query:       CTQ27028.1  [L=516]
Description: Ribose import ATP-binding protein RbsA 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-45  155.1   0.0    7.4e-26   91.3   0.0    2.2  2  ABC_tran     ABC transporter
    4.7e-11   43.1   0.6    0.00028   20.8   0.1    3.1  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00066   19.4   0.1     0.0055   16.4   0.0    2.3  2  AAA_29       P-loop containing region of AAA domain
      0.005   16.8   0.0      0.062   13.2   0.1    2.4  3  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.062   13.8   0.1      0.097   13.2   0.1    1.2  1  AAA_23       AAA domain
       0.13   11.9   0.1       0.26   11.0   0.1    1.5  1  AAA_30       AAA domain
       0.14   11.6   0.0        3.2    7.1   0.0    2.5  2  SMC_N        RecF/RecN/SMC N terminal domain
       0.14   11.8   0.0       0.19   11.4   0.0    1.1  1  AAA_15       AAA ATPase domain
       0.16   12.3   2.3        5.3    7.4   2.4    2.5  1  AAA_16       AAA ATPase domain
       0.28   11.2   0.3        1.5    8.9   0.1    2.0  2  TsaE         Threonylcarbamoyl adenosine biosynthesis protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.0   4.1e-29   7.4e-26       1     137 []      30     182 ..      30     182 .. 0.87
   2 !   61.8   0.0   5.1e-20   9.2e-17       1     136 [.     286     440 ..     286     441 .. 0.85

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 4.1e-29
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH..................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..................x RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren..................e 80 
                 l+ v+l l++ge+++++GenGaGKStL+k+lag ++ ++G+ +ldg++l   ++  +  + i+v++qe +l p+ tv+e+                   
  CTQ27028.1  30 LNAVTLRLNPGEIHGLIGENGAGKSTLIKILAGVYQADSGSATLDGHPLPLgNPAAIEAAGIRVIHQELNLIPHFTVAESvflgqeyrtrwgaldrrrM 128
                 6899*********************************************998999*****************************999999887544433 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHH.TSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallk.kpkllllDEpta 137
                 + + ++ + ++ +l  ++++ v    + LS  +++ v++aral+  +++l+++DEpta
  CTQ27028.1 129 KAATAQFFQQNWQLAIDPERLV----RDLSLAERKLVQIARALIDgAARLVVFDEPTA 182
                 3333555555666666777777....*****************962679*******97 PP

  == domain 2  score: 61.8 bits;  conditional E-value: 5.1e-20
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................ 79 
                 l+++s+++++ge+v++ G  GaG   L+ ll+gl   + G+i+l+g++ +  ++++  r+ ++ +p +   + l    t ++n                
  CTQ27028.1 286 LQDLSFDIQPGEIVGVAGLLGAGRDVLVDLLYGLRPAERGTIHLEGRPRRIrTPKQAIRAGMALVPRDrrhQGLILPFTTADNinlaslpetatfgwer 384
                 789******************************************9999887899*************6554444445566669******999999887 PP

                 ..HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ..esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                    +++++ +++++l +      + +   + +SgG +q+  lar l ++++l++lDEpt
  CTQ27028.1 385 rgLAEQKARDWIEQLAIRP---GRPGLPVRYMSGGNQQKAILARWLGTDARLFILDEPT 440
                 7755666666666666655...333444699***************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   1.6e-07   0.00028       2      25 ..      43      66 ..      42     100 .. 0.80
   2 ?    2.4   0.1     0.061   1.1e+02     234     298 ..     150     212 ..     133     217 .. 0.75
   3 !   16.6   0.0   3.1e-06    0.0055     224     298 ..     400     471 ..     337     476 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.6e-07
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl 25
                 +liG Ng+GKS+L+++l ++ ++
  CTQ27028.1 43 HGLIGENGAGKSTLIKILAGVYQA 66
                68****************999875 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.061
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 +r+lS   ++l  ++ al++ +   +l+++DEp + L+ +  + +   + +l++ g+ ++  +H 
  CTQ27028.1 150 VRDLSLAERKLVQIARALIDGAA--RLVVFDEPTAPLEAQEASLVSSAILRLRDQGIAILYISHY 212
                 67778888888777777776554..********99888877766667777777777777777775 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 3.1e-06
      AAA_21 224 lengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                   ++++  lp+r +S G ++  a+l+  l ++   +l+++DEp +g +  + r +++  ++l++ g  v++++ +
  CTQ27028.1 400 AIRPGRPGLPVRYMSGGNQQK-AILARWLGTDA--RLFILDEPTLGVDIGARRDIYQRTRQLADQGRAVLVSSSD 471
                 34555556777777*******.88888887775..****************************999999999855 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.1e-06    0.0055      14      39 ..      32      57 ..      28      67 .. 0.86
   2 ?   -0.5   0.0      0.58     1e+03      12      40 ..     286     314 ..     275     320 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.1e-06
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTll 39
                  t+++++ +++ l+G++G+GKSTl+
  CTQ27028.1 32 AVTLRLNPGEIHGLIGENGAGKSTLI 57
                4678899888999************8 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.58
      AAA_29  12 fdghtieidlkgatlltGpsGsGKSTllD 40 
                 +++ +++i++ +++ ++G  G+G   l+D
  CTQ27028.1 286 LQDLSFDIQPGEIVGVAGLLGAGRDVLVD 314
                 5566788888889999*******999999 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   3.4e-05     0.062      91     124 ..      31      65 ..      16      74 .. 0.78
   2 ?    0.1   0.0      0.36   6.5e+02      85     122 ..     281     319 ..     261     332 .. 0.82
   3 ?   -3.5   0.0       4.6   8.3e+03      13      41 ..     458     485 ..     448     487 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.4e-05
                  HHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  91 eelkellkd.ktsvlvGqSGvGKStLinallpele 124
                  ++++ +l+  ++  l+G+ G+GKStLi+ l++  +
   CTQ27028.1  31 NAVTLRLNPgEIHGLIGENGAGKSTLIKILAGVYQ 65 
                  55555666658999**************9998654 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.36
                  TTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  85 ktkegleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                  +++++l++l+  ++  +++ ++G  G+G+  L++ l + 
   CTQ27028.1 281 SDGRQLQDLSFDIQPgEIVGVAGLLGAGRDVLVDLLYGL 319
                  56789999*99999989999************9999764 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 4.6
                  EES--EEEEEEESTTTT--HHHHHHHHHH CS
  RsgA_GTPase  13 vaNvdqllivvslkepelslnlldrfLvl 41 
                   a   ++++v+s + pel l l dr+Lvl
   CTQ27028.1 458 LADQGRAVLVSSSDAPEL-LGLCDRILVL 485
                  555567888888887776.6777888875 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   5.4e-05     0.097      21      39 ..      42      60 ..      22      66 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.4e-05
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                +  ++G+NGaGK+T++  +
  CTQ27028.1 42 IHGLIGENGAGKSTLIKIL 60
                67799**********9765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00015      0.26      17      46 ..      39      69 ..      30     181 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaa.g 46
                +  ++ l G  G+GK+t++k l+ +++a+ g
  CTQ27028.1 39 PGEIHGLIGENGAGKSTLIKILAGVYQADsG 69
                44588999******************99855 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0018       3.2      26      42 ..      42      58 ..      23      68 .. 0.82
   2 ?    1.8   0.0     0.078   1.4e+02     161     197 ..     174     211 ..     151     473 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0018
                EEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlld 42
                +  ++G+NG+GKs l+ 
  CTQ27028.1 42 IHGLIGENGAGKSTLIK 58
                6789*********9986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.078
                 EEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
       SMC_N 161 lyllDeidaaLDeknvkkvaellkekskn.aQfivisl 197
                 l+++De  a L +++ + v++ + + +++   ++ is+
  CTQ27028.1 174 LVVFDEPTAPLEAQEASLVSSAILRLRDQgIAILYISH 211
                 67777777777777777777777666644244444444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.19      25      43 ..      42      60 ..      29      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
      AAA_15 25 ltvliGkNnsGKSsileal 43
                +  liG+N++GKS+++++l
  CTQ27028.1 42 IHGLIGENGAGKSTLIKIL 60
                5569*************99 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.4    0.0029       5.3      25      52 ..      41     108 ..      23     207 .. 0.48

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0029
      AAA_16  25 elvllsGesGvGKsslvrellralekd........................................g 52 
                 e+  l+Ge G GKs+l++ l+  +++d                                        +
  CTQ27028.1  41 EIHGLIGENGAGKSTLIKILAGVYQADsgsatldghplplgnpaaieaagirvihqelnliphftvaE 108
                 455589***********999977777754444444444444444444444444444444444333331 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00083       1.5       8      42 ..      18      63 ..      15      72 .. 0.71
   2 ?   -0.4   0.0      0.62   1.1e+03      12      37 ..     291     314 ..     280     319 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00083
                HHHHHHHHHCH...........TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  8 ealgkklakal...........gdvilLeGdLGaGKTtlvrglaka 42
                e++gk++a+++           g++  L G+ GaGK+tl++ la  
  CTQ27028.1 18 EQIGKRFASVTalnavtlrlnpGEIHGLIGENGAGKSTLIKILAGV 63
                667777777555544444444455699**************98865 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.62
                 HHHHHCHTEEEEEEESTTSSHHHHHH CS
        TsaE  12 kklakalgdvilLeGdLGaGKTtlvr 37 
                  +++   g+++   G LGaG  +lv 
  CTQ27028.1 291 FDIQP--GEIVGVAGLLGAGRDVLVD 314
                 33333..788999*******998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3564.43
//
Query:       CTQ27029.1  [L=326]
Description: ABC-type sugar transport system, periplasmic component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-45  155.7   0.2    1.9e-45  155.4   0.2    1.0  1  Peripla_BP_4  Periplasmic binding protein domain
    8.8e-12   45.0   0.0    1.5e-11   44.3   0.0    1.3  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    2.9e-08   34.2   0.0    1.9e-07   31.6   0.0    2.0  2  Peripla_BP_3  Periplasmic binding protein-like domain
    4.9e-07   29.7   2.5    0.00017   21.4   0.1    2.9  3  Peripla_BP_6  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   0.2   4.3e-49   1.9e-45       1     258 []      35     295 ..      35     295 .. 0.95

  Alignments for each domain:
  == domain 1  score: 155.4 bits;  conditional E-value: 4.3e-49
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CE CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerl 97 
                   igv+v  +++ + ++a +g+ e +++lg++v+ v d++ d++  +++ + +++++vd++i    d +a++p +k++++aGIpV+++d     s   +
    CTQ27029.1  35 IGVAVVGTQHFWDREAFKGATEEVEKLGGKVIGV-DGGRDNQVHANNHDILLSRKVDAVISILGD-SAIEPKFKALRDAGIPVFTVDHV---SQYSV 126
                   7999****************************97.***************************999.5**********************...999** PP

                   EEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCC.HHHHHHHHHHHHHHHHH-TTCEECC..EEESTTTCHHHHHHHHHHHHHTTT...ECEE. CS
  Peripla_BP_4  98 ayvgfdneaaGelqaeylaeklggkkgkvvilaGspg.dpnaeeriegfrkvlkeypgikiva..evaganwdaekaqqalealltanp...ldgi. 187
                    + + dn++ G ++++y+a+ lggk g+v++++++ +  +    r++  + vlk+yp+i i++   +++  +++e+a++++ +ll+++p   ld+i 
    CTQ27029.1 127 NNTTSDNYTLGSTIGRYMADELGGK-GNVAVFNAFSSaLRICGIRYDQWKYVLKDYPDIHIIQpeLAEQFANSPEDARKKTLELLSQYPkgkLDAIh 222
                   *************************.******777774666779*******************86444889***************664467***** PP

                   EESSCCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSE..EEEE--HHHHHHHHHHHHHHHHTT-- CS
  Peripla_BP_4 188 laandgmaegalealeaaglagkvvvtgqDatpealeaikdGtid..atvaqdpyelgyaavelavallkGkk 258
                   +a++d +a+g+++ale++g++++v+vt++Da pe+le +++      a vaq+p+ +g+++++ ++++ +G+k
    CTQ27029.1 223 VACWDQPAIGIVQALEETGRDKDVKVTAIDAGPETLEIMAEPGSPfvANVAQQPHLIGQTSADNVARYFAGQK 295
                   *******************************************99889********************99986 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   3.3e-15   1.5e-11      12     256 ..      43     288 ..      33     308 .. 0.76

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 3.3e-15
                   TSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE..-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EEEE-HHHH CS
  Peripla_BP_1  12 dePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliia..tsdtsfdditakaesgipvialedaidapdgvPcvipddtqa 105
                   ++ +  +  kg+t++ +++g +v+ + +g +++++ +  d l+++++d++i     s+   ++ +a   +gipv  ++ +++    v     d+++ 
    CTQ27029.1  43 QHFWDREAFKGATEEVEKLGGKVIGVDGGRDNQVHaNNHDILLSRKVDAVISIlgDSAI-EPKFKALRDAGIPVFTVDHVSQYS--VNNTTSDNYTL 136
                   4444456789****************************************854214444.5*******************9888..*********** PP

                   HHHHHHHHHHHHHHHT.GEEEEEE-TTS.HHHHHHHHHHHHHHHTT-.GGGEEEEE-.SSSSHHHHHHHHHHHHTT-TT-S...EEE-SSHHHHHHH CS
  Peripla_BP_1 106 geestqkLiaeghkrp.iallegpesal.takervqGflaalaeaGl.evkdvhval.gsndiedaaealnelleshPeid...aivaindeaalGa 195
                   g   ++++  e  +++ +a++++ +sal   + r + +   l++     + ++++a+   n+ eda++   ell++ P  +   + va  d+ a+G+
    CTQ27029.1 137 GSTIGRYMADELGGKGnVAVFNAFSSALrICGIRYDQWKYVLKDYPDiHIIQPELAEqFANSPEDARKKTLELLSQYPKGKldaIHVACWDQPAIGI 233
                   ***********999999***********88899999999999998544444555665258999**************9866776669********** PP

                   HHHHHHTT..--GGGEEEEEESS.GGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHH CS
  Peripla_BP_1 196 vlalkkeGr.lkikeevdsfies.vvvydgLkkaqdtilelsplaviqlprellGrkasdmvl 256
                   v+al+  Gr    k  v + i +    ++ +  a+++  +  ++ v+q p +l+G++++d+v 
    CTQ27029.1 234 VQALEETGRdKDVK--V-TAIDAgPETLEIM--AEPGSPF--VANVAQQP-HLIGQTSADNVA 288
                   ********732222..2.2222202222222..3333222..33444555.566777666665 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.16     7e+02      13      99 ..      36     114 ..      28     151 .. 0.71
   2 !   31.6   0.0   4.1e-11   1.9e-07      58     153 ..     200     300 ..     152     308 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.16
                   EEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC-SEEEEE.SSCCHHHHHHHHHCCTT-- CS
  Peripla_BP_3  13 afiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalll.qalklaalPtAvia.asDelAlgvlqalreaglr 99 
                   +++      ++ +++e ++g+ +++e+lg ++  + +  d +  a+  ++   l +      + +Avi    D++     +alr+ag+ 
    CTQ27029.1  36 GVAV--VGTQHFWDREAFKGATEEVEKLGGKVIGVDGGRDNQVHANNHDIL--LsR------KVDAVISiLGDSAIEPKFKALRDAGIP 114
                   5555..345567888999999999999998877777666555444443332..222......336666557777777777888888875 PP

  == domain 2  score: 31.6 bits;  conditional E-value: 4.1e-11
                   HHHH.......HHHHHCC-SE....EE.EESSCCHHHHHHHHHCCTT--TTTTEEEEBSS--SCC.CSSSS--....EEEE--HHHHHHHHHHHHHH CS
  Peripla_BP_3  58 aaaraal..llqalklaalPt....Av.iaasDelAlgvlqalreaglrvPedlsvigfddsela.alssPpl....TtvrqpleelGraaaellld 142
                   ++ar++   ll +     +P+    A+ +a++D+ A+g++qal+e g    +d++v+++d  +++ +++  p       v+q+++ +G++ a+ +++
    CTQ27029.1 200 EDARKKTleLLSQ-----YPKgkldAIhVACWDQPAIGIVQALEETGRD--KDVKVTAIDAGPETlEIMAEPGspfvANVAQQPHLIGQTSADNVAR 289
                   3333333222233.....443333365266******************9..*********876666666555544559******************* PP

                   HHTT---S--E CS
  Peripla_BP_3 143 llegekappeq 153
                   + +g+k p ++
    CTQ27029.1 290 YFAGQKLPVQT 300
                   **999988765 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.1    0.0098        44     130     168 ..      28      67 ..      16      74 .. 0.77
   2 !   21.4   0.1   3.8e-08   0.00017      49     146 ..      69     162 ..      64     167 .. 0.82
   3 !    4.3   0.0    0.0059        26     186     238 ..     213     264 ..     187     301 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0098
                   HHHTTSC..EEEEEEESSHHHHHHHHHHHHHHHCCTEEEEE CS
  Peripla_BP_6 130 akelggk..kvalvyadyafgregiaalkaaakaaGgevvg 168
                   ++ l gk   va+v++++ + re+ +++++ ++++Gg+v+g
    CTQ27029.1  28 LS-LQGKtiGVAVVGTQHFWDREAFKGATEEVEKLGGKVIG 67 
                   44.4455133678999999*******************997 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 3.8e-08
                   E-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEEESS-HHCCTTSTTEE.ESS--HHHHHHHHHHHHHHHTTSC.EEEEEEE CS
  Peripla_BP_6  49 Ddaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvigpagltgekcspyvf.slgpsysaqasalveylakelggk.kvalvya 143
                   D + d ++ a++   l++ ++vda++  l++++ +   ++l+++g+pv+++     +++s+y + +++ ++++ +s++++y+a+elggk +va+++a
    CTQ27029.1  69 DGGRDNQVHANNHDILLS-RKVDAVISILGDSAIEPKFKALRDAGIPVFTV-----DHVSQYSVnNTTSDNYTLGSTIGRYMADELGGKgNVAVFNA 159
                   555666666666555666.9*****************************98.....6788887736678999***************8879999987 PP

                   SSH CS
  Peripla_BP_6 144 dya 146
                    ++
    CTQ27029.1 160 FSS 162
                   665 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0059
                   HHTTT-SEEEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHHHHHHH CS
  Peripla_BP_6 186 ikaagadavllagtgadlaallkaaaeaGldakrillvswsgseedlkalgge 238
                     + + da+ +a + ++++ +++a++e+G d   +++ + ++++e+l+ ++++
    CTQ27029.1 213 YPKGKLDAIHVACWDQPAIGIVQALEETGRDK-DVKVTAIDAGPETLEIMAEP 264
                   556678999999*******************6.59999999999998766653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2382.35
//
Query:       CTQ27030.1  [L=769]
Description: Biotin sulfoxide reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-62  211.0   0.0    3.7e-62  210.7   0.0    1.1  1  Molybdopterin    Molybdopterin oxidoreductase
    1.1e-26   93.1   0.0    3.2e-26   91.5   0.0    1.8  2  Molydop_binding  Molydopterin dinucleotide binding domain
    5.9e-09   35.8   0.4    1.4e-08   34.6   0.4    1.7  1  Molybdopterin_N  Molybdopterin oxidoreductase N-terminal doma


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.7   0.0   6.2e-66   3.7e-62       1     431 [.      52     507 ..      52     508 .. 0.89

  Alignments for each domain:
  == domain 1  score: 210.7 bits;  conditional E-value: 6.2e-66
                    B--S-EEEC..........TTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTH CS
  Molybdopterin   1 RlkyPmvRk..........qargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppa 86 
                    R+++P vR           + rg+  Fv+vsW+ Al+l a++l+ ++   g+++++ ++s+++ s+  ++ ++  l ++ + ++++  + + ++ a
     CTQ27030.1  52 RIRRPAVRAgylqhgpasrEGRGKEPFVEVSWEVALDLLARELRSVKARCGNEAIY-GGSYGWASAGRFHHAQSQLHRFLKGFGGYTASTNTYSSA 146
                    8999****99******9999999999******************************.9999********************************888 PP

                    HHH....CHHCCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHH....HHHHHHHHHTTC....-EEEEECSSB-H.CGGGCSEEEEEHTTTH CS
  Molybdopterin  87 saq....qtigsdsrsnyessnpledlensdliilwGsNvreerpil....narirkaalkkk....akvivigpryae.llkfadewlaikpgtd 169
                    + +    + +g+ s    + +   e   + +l++++G  + +++++     n ++++ +l k+    +++i i+p  ++ ++  + ewlai+pgtd
     CTQ27030.1 147 AGErilpHILGPLSPLHRQHTHFSELARECQLFVAIGGLPLRNAQVNgggaNDHMLQYWLDKMqangTRFINISPVRNDlSAVPDAEWLAIRPGTD 242
                    777999855555444333333333444799*******************************99****************8777899********** PP

                    HHHHHHHHHHHHHCCCCTCHHHHHHEECHHHCCCCCCCEECCS......HHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHH CS
  Molybdopterin 170 aalalamghvilqelkvdkeflrkytygkeetdmpllvtleee......tgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyrav 259
                     al+la+++v+++e ++d++f++++t+g++ ++ +ll++ ++       ++++++  a+++  lar++a  ++  m+ + +++++ ++g+++y+a+
     CTQ27030.1 243 TALLLALSYVLIAESLYDQAFVASHTVGFAPYRAYLLGEHDGVaktpawAAAITGLDAQRIADLAREMARHRT--MVNISWSIQRARQGEQAYWAT 336
                    ***************************************9999999999********************9999..9999***************** PP

                    HHHHHHCTHCSSTTCEEEEESSCTTHHHCHHHHTCCTTCCCCCCCTT............HHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEE CS
  Molybdopterin 260 inLallvgnvgqpgGgwahlnGqlilagaaekvgalpvllsvkslke............ekikfaaeqpgnlgnfprnlfversnllkssgkkvly 343
                    + L +l+g+ g+pgGg +   +  +laga +k+   p l+  ++ +              +++ ++e  g+    p              +++ +y
     CTQ27030.1 337 VALTALLGQLGTPGGGLGFGYACTNLAGAVRKAFSGPRLPAGENAVDsvipvarlsdmlLHPGETYEFDGQQRRYP--------------DIRLVY 418
                    ****************998666788888888888888888888888877766544444444444444444444444..............56667* PP

                    EESH.HHHHSTTSCCCHCHHHCSSEEEEEESCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEE.EEESSS-STT-BEHHHHHHHHHH CS
  Molybdopterin 344 llgnnpevdhadenevekalekldlvvvldgrltstalyaDiiLPaatwyEkedlytndegrfqh.lkqavsppgeaksdwkIlkaLak 431
                    ++g n +++h+d n++ +a++++++vvv + ++t  a+++Di+LPa+t +E+ed+ + +   f+  +++ ++p gea++d+ I+++La 
     CTQ27030.1 419 WAGGNAFHHHQDLNRLCEAWRRPETVVVHEQYWTAQAKFSDIVLPATTSLEREDIGSGGHDGFMIaMSAQIPPVGEARDDYAIFCDLAG 507
                    *********************************************************999999988*********************96 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.1   1.3e+04      70      81 ..     440     451 ..     420     459 .. 0.62
   2 !   91.5   0.0   5.3e-30   3.2e-26       1     110 [.     624     744 ..     624     745 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.1
                      -TTEEEEESSHC CS
  Molydop_binding  70 rpGvvfmpfgww 81 
                      rp +v+++ ++w
       CTQ27030.1 440 RPETVVVHEQYW 451
                      444555555555 PP

  == domain 2  score: 91.5 bits;  conditional E-value: 5.3e-30
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS.-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC........... CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpep.evveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwwe.........ag 84 
                      l+L + +++ +lhsq+++++v+r+ k+++ e ++++p dA+a++i++G  V+v+++rG++ + ++++e++ pGvv m +g+w+         + 
       CTQ27030.1 624 LHLLSSQPRARLHSQYDHGSVSRATKVQGrEPLWMHPSDAQARDIREGSVVKVYNDRGAILAGVHLSEQILPGVVQMSTGAWYdpldpnekgSL 717
                      789999**************************************************************************************** PP

                      ...S-GHCTS.--SCSTTT--CSTT-E CS
  Molydop_binding  85 ekggnaNalt.ddatdplsgtpefksv 110
                      +k+gn N+lt d++ + l ++ +++s+
       CTQ27030.1 718 DKHGNPNVLTeDRGSSRLGQGCSAQSC 744
                      **********999999****9999998 PP

>> Molybdopterin_N  Molybdopterin oxidoreductase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.4   2.4e-12   1.4e-08       4      40 ..      11      47 ..       8      47 .. 0.98

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 2.4e-12
  Molybdopterin_N  4 HWGafraevkdGkivgvrPfegDpdPspllegvpdav 40
                     HWG  ++e ++G iv+v+P ++D++Ps + +++pdav
       CTQ27030.1 11 HWGTWQVESREGEIVAVKPVPWDKNPSRIGQSLPDAV 47
                     ***********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5479.00
//
Query:       CTQ27031.1  [L=180]
Description: Acireductone dioxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-34  119.9   0.0    1.3e-34  119.6   0.0    1.0  1  ARD           ARD/ARD' family
    1.7e-05   24.5   0.1    2.8e-05   23.7   0.1    1.3  1  Cupin_2       Cupin domain
  ------ inclusion threshold ------
      0.036   13.7   0.0      0.049   13.2   0.0    1.3  1  Cupin_1       Cupin
      0.059   13.3   0.1      0.083   12.8   0.1    1.2  1  AraC_binding  AraC-like ligand binding domain


Domain annotation for each model (and alignments):
>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.0   2.9e-38   1.3e-34      17     157 .]      18     165 ..       7     165 .. 0.95

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 2.9e-38
         ARD  17 hhtspkekaeelelaklgvlrwkldaddeeeaeeeekilktkeeekkdi........dvevlkestpnfdeklekFfeEhlhedeeirliveGtgyFdv 107
                 h t+ k ++++l+++ ++++rw++d d  ++ + e  i ++++ ++k +        dv++l++ +p+++ ++ekF++Eh+h ++e+r++veG+g+F +
  CTQ27031.1  18 HSTDAKAIQDQLNAKGVRFERWQADRDLGANPSPETVIAAYQHAIDKLVaekgyqswDVISLRADNPQKEALREKFLNEHTHGEDEVRFFVEGAGLFCL 116
                 777888888888999999********************************************************************************* PP

         ARD 108 rskdeawirvlvekGDLivlPagiyhrFtltednkvkalRlFvekekwva 157
                 +  de++  vl+ek DLi++Pa + h+F++++++++ a+R+F + e+w+a
  CTQ27031.1 117 HIGDEVFQ-VLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNPEGWIA 165
                 *******9.***************************************86 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   6.3e-09   2.8e-05      13      58 ..      96     144 ..      88     154 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 6.3e-09
                 EECSSSEEEEEEEEESEEEEE..ECTE..EEEEETTEEEEE-TT-EEEEE CS
     Cupin_2  13 shrHpgedeffyVleGegelt..vdge..eveleaGdsvyfpagtpHrfr 58 
                 +h+H +  e+++ +eG g +   +++e  +v  e+ d++ +pa+tpH+f 
  CTQ27031.1  96 EHTHGED-EVRFFVEGAGLFClhIGDEvfQVLCEKNDLISVPAHTPHWFD 144
                 6777776.*********8776558899899999***************96 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.049      49     127 ..      97     170 ..      68     180 .] 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
                 EEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEEEEEEESSSTT-EEHSCEH CS
     Cupin_1  49 hyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepavaivvfdtnnpgnqsvlaal 127
                 h+h    e+ + ++G g++ + + +   ++f+   ++ d++ vPa+ +h++     ep++  + + +n++g + ++++ 
  CTQ27031.1  97 HTH-GEDEVRFFVEGAGLFCLHIGD---EVFQVLCEKNDLISVPAHTPHWFDMGS-EPNFTAIRIFDNPEGWIAQFTGD 170
                 888.889999999999995555555...46666699***************8775.9******9999999999888865 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.8e-05     0.083      16      66 ..      93     148 ..      86     171 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
                   E.EEETT-SEEEEEEEEE-EEE..EETTEE..EEE-TT-EEEE-TTS-EEEEE-TT CS
  AraC_binding  16 f.pphvhdeyvihyvteGtgrl..rlngrt..ydlgpGdlfLlppgepHdyesdse 66 
                   f  +h+h+e ++  ++eG+g +  +++++   + ++++dl+ +p ++pH +  +se
    CTQ27031.1  93 FlNEHTHGEDEVRFFVEGAGLFclHIGDEVfqVLCEKNDLISVPAHTPHWFDMGSE 148
                   5589******************9999999966778**************7766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1366.86
//
Query:       CTQ27032.1  [L=229]
Description: Enolase-phosphatase E1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-07   30.2   0.0    6.8e-07   29.8   0.0    1.2  1  Hydrolase  haloacid dehalogenase-like hydrolase
     0.0026   17.9   0.0     0.0054   16.8   0.0    1.5  1  HAD_2      Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   7.6e-11   6.8e-07       1     210 []       2     196 ..       2     196 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 7.6e-11
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH.....HHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar.....sgaltgfatfigrgayaigkpewltaldippdlgaaigsaq 94 
                 i+++v D+ GT  + + ++  ++++a            +  ++  ++a+ +a+       +l + +      a a    +++t l +    +++ ++a 
  CTQ27032.1   2 IRAIVTDIEGTTSDIRFVHNVLFPYA------------RERLAGFVTAQQHAEpvktiLDNLRRETD-----APAASTADLITTL-FAFMDEDRKSTAL 82 
                 789***********************............33333333444444433333666666666.....8888888888888.8889999****** PP

                 HHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES..STTTSHHHHHHHHHHHTSTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  95 sqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdiet..vakpspegkvaaireLqgkpe 191
                 ++ +  ++ ++ + ++ft +    ++p++  a++++ka+gi++++ ++++ + ++ +    ++  + + ++++ +t   ak + + ++ +++ L+  p 
  CTQ27032.1  83 KALQGIIWRDGYLNGDFTGH----LYPDVLPALEKWKAQGIDLYVYSSGSVAAQKLLFGYSDEGDITHLFTGYFDTlvGAKREVQSYRNIAEHLGHAPG 177
                 ******************98....*************************9977775555555788888889999999899999**************** PP

                 GEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxx RF
   Hydrolase 192 evamVGDgvnDaaalaaAg 210
                  +++  D    + a++aAg
  CTQ27032.1 178 TILFLSDIHQELDAAEAAG 196
                 ******************8 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     6e-07    0.0054      79     177 ..     102     201 ..      75     202 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6e-07
       HAD_2  79 kpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivts.edvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                 ++y++v  +Le+ k++g+ l + +s+s +a++  +   +  ++ +   +  ++  + K + ++++++ e+l+  +  +++  D ++ + aa +ag+++i
  CTQ27032.1 102 HLYPDVLPALEKWKAQGIDLYVYSSGSVAAQKLLFGYSDEGDITHLFTGYfDTLVGAKREVQSYRNIAEHLGHAPGTILFLSDIHQELDAAEAAGLRTI 200
                 689***********************9999987665444333333222221333444556788**********************************99 PP

       HAD_2 177 a 177
                  
  CTQ27032.1 201 Q 201
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1820.88
//
Query:       CTQ27033.1  [L=386]
Description: methionine aminotransferase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-56  192.1   0.0    1.8e-56  191.9   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    5.4e-06   25.2   0.0    7.5e-06   24.7   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    8.1e-06   25.0   0.0    1.2e-05   24.5   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
     0.0062   15.9   0.0      0.012   14.9   0.0    1.4  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.9   0.0   4.1e-60   1.8e-56       4     362 ..      33     382 ..      30     383 .. 0.91

  Alignments for each domain:
  == domain 1  score: 191.9 bits;  conditional E-value: 4.1e-60
                    EESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEE CS
  Aminotran_1_2   4 inLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvp 99 
                    i L+++ +++d      p+ +++     +  +++n+y p++g p+l+ea+a    + ++ + + +++++v+ Ga++++ a+i++l + +gde++ +
     CTQ27033.1  33 ISLSQGFPDFD-----GPRYLQERLA-YHVAQGANQYAPMTGVPALREAIAGKTAELYGYQPDVNSEITVTAGATEALYAAITAL-VRRGDEVICF 121
                    67888888887.....3444444444.588899******************6666666688888999******************.9********* PP

                    ESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBS CS
  Aminotran_1_2 100 dptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvf 195
                    dp+y+sy +++ l+gge++r++l+ ++ f++d+ ++ +al+e      kt+++++++phNP+ tv+ +e+  +l + + ++++++++De+Y++ +f
     CTQ27033.1 122 DPSYDSYAPAVALAGGELRRIALQ-PPHFRVDWRQFAAALSE------KTRLVILNTPHNPSATVWQREDFAALWQAIAEREIYVLSDEVYEHICF 210
                    **********************66.9****************......************************************************ PP

                    SSSHTHHH..HGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 196 gsldavat..ranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrke 287
                     + +++++  ++++ e+   + v+s++K f ++G+ vGy+++ aa+   lrk+++ +++   +++q a+a +l+ a++   +  e  + + +rr+ 
     CTQ27033.1 211 AEGGHASVlaHPQLRER--AVAVSSFGKTFHMTGWKVGYCVAPAAISAELRKVHQYLTFsvNTPAQLAIADMLREAPE---HYRELPAFYRERRDL 301
                    *8876666556666665..68**************************************999***************7...9************** PP

                    HHHHHHHSTEEEECCSCSSEEEEEETHH...CHHHHHHHHHHTCTEEEEEGGGGTS....TTEEEEECTTS-HHHHHHHHHH CS
  Aminotran_1_2 288 lrdeLaelglkvlasqsgmflltdlsae...takelskkLleevgvyvtpgtsftv....pgrlRitvAglteeeleelvea 362
                    + ++L+   l++l+ ++++fll d+sa    ++ ++++ L++evgv+ +p + f +     + +R+++ +  +++l  ++++
     CTQ27033.1 302 FIEALRPSRLEILPCEGTYFLLADYSAIsdlDDVSFCRWLTTEVGVAAIPLSVFCAdpfpHKLIRLCF-AKQPATLLAAATR 382
                    *****888*******************988889999999***************99***9899*****.8888888777776 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.7e-09   7.5e-06      72     175 ..      96     204 ..      61     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.7e-09
                      EESSHHHHHHHHHHTTS-TTEEEEEES...TSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT---...-HHHH CS
  Cys_Met_Meta_PP  72 avssGmaAiaaailallkaGdeivvsd...dlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvv...Dieki 159
                      +++  + A+ aai+al++ Gde+++ d   d Y ++ +l    l+++ ++  ++ + d  ++++a++e+t+lv l tp np   v    D++++
       CTQ27033.1  96 VTAGATEALYAAITALVRRGDEVICFDpsyDSYAPAVALAGGELRRIALQPPHFRV-DWRQFAAALSEKTRLVILNTPHNPSATVWqreDFAAL 188
                      4445566999***************8822245566788888999999999999988.7899********************9988544489999 PP

                      HHHHHHTT-EEEEEGT CS
  Cys_Met_Meta_PP 160 aklakkagvlvvvDnt 175
                       +++ ++++ v+ D +
       CTQ27033.1 189 WQAIAEREIYVLSDEV 204
                      9999999999988865 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.7e-09   1.2e-05      60     175 ..      90     202 ..      60     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.7e-09
                  TGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBET.TSCBEGGGHHHH--TTEEEEEEESBETTTTEB- CS
  Aminotran_5  60 seeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkviplde.egeldldelekllnektklvaithvsnvtGtiq 156
                   ++ei +t G+tea+ +++ +l   +++gde++  +  + +   p+++la   g +++ i l++ + ++d+ +++++l+ekt+lv+++   n + t+ 
   CTQ27033.1  90 VNSEITVTAGATEALYAAITAL---VRRGDEVICFDPSYDSYA-PAVALA---GGELRRIALQPpHFRVDWRQFAAALSEKTRLVILNTPHNPSATVW 180
                  478*******************...9*****************.*****9...9999999998637899******************99999888865 PP

                  ...-HHHHHHHHHHTT-EEEEE CS
  Aminotran_5 157 ...pveeigklakkkgalvlvD 175
                     +++++ +++ +++++vl D
   CTQ27033.1 181 qreDFAALWQAIAEREIYVLSD 202
                  0114444445555567777766 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.8e-06     0.012      42     117 ..      94     169 ..      82     203 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.8e-06
                      EEE.SSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEEEE CS
  DegT_DnrJ_EryC1  42 iav.ssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitertkaIlp 117
                      i+v + +t+Al  a++al v +gdeVI    ++ + a av+ +g +   +  +p  + +d  + +aa+ e+t+ +++
       CTQ27033.1  94 ITVtAGATEALYAAITAL-VRRGDEVICFDPSYDSYAPAVALAGGELRRIALQPPHFRVDWRQFAAALSEKTRLVIL 169
                      45405579*********9.777**************************************************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2798.58
//
Query:       CTQ27034.1  [L=212]
Description: immunoglobulin-binding regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-12   47.2   0.0    4.9e-12   46.0   0.0    1.7  1  ParBc     ParB-like nuclease domain


Domain annotation for each model (and alignments):
>> ParBc  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   2.7e-16   4.9e-12       2      89 ..      52     148 ..      51     149 .. 0.84

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 2.7e-16
       ParBc   2 evplseirpnplqprkdspekieelvasIkkkGllqPiivrktrqgryeiiaGerRlr.Aakrlg.......lkevpvivleid.deeamalslien 89 
                 +v+ + + pn+++p++ +p + + l+ s++++G++qP++v + r + y i++G +R++ A+  ++       + +v ++  e+  ++  ma+++++n
  CTQ27034.1  52 WVKQELVAPNDYNPNNVAPPEKRLLQTSLEADGFTQPVVVIQQRPQAYTIVDGFHRHElACSKAAlkktlkgYLPVTCLTSEAAsRDGLMAATIRHN 148
                 67888899*******99****************************************9566666688888666666666666667777788887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      761  (0.0424452); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1559.27
//
Query:       CTQ27035.1  [L=407]
Description: immunoglobulin-binding regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-37  127.5   0.3    1.4e-26   93.3   0.1    2.3  2  DUF3440          Domain of unknown function (DUF3440)
    2.7e-18   66.6   0.0      2e-17   63.8   0.0    2.1  1  PAPS_reduct      Phosphoadenosine phosphosulfate reductase fa
    5.9e-05   22.9   0.0    0.00013   21.8   0.0    1.6  1  ATP_bind_3       PP-loop family
     0.0066   16.9   0.1       0.03   14.8   0.0    2.1  2  Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
  ------ inclusion threshold ------
      0.059   12.9   0.0        0.1   12.1   0.0    1.3  1  QueC             Queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> DUF3440  Domain of unknown function (DUF3440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.1   3.9e-30   1.4e-26       1     101 [.     237     339 ..     237     346 .. 0.95
   2 !   32.5   0.0   1.8e-11   6.4e-08     147     180 ..     352     385 ..     340     387 .. 0.81

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 3.9e-30
     DUF3440   1 GvslekqrvasPfideakesLklyrvidpetWgklvgrvnGvnfaaiygk..tkalgyrkvklPkghtWksyvkfLLstlpeelrenylkklkvsikfW 97 
                 Gv+l+ +r+++Pf  e++++L ly+v++pe W+ +  rv+G+  +++y++  ++  g+rk+  P++ tWksy  fLL+ +pe++ e+y +k+ v ++++
  CTQ27035.1 237 GVPLRYMRICEPFGPEQRQGLWLYHVLEPERWAAMCQRVSGAHSGGVYAGhdNQFYGHRKIDKPDHLTWKSYALFLLDSMPETTAEHYRNKIAVYLRWY 335
                 899*********************************************96336789******************************************* PP

     DUF3440  98 rekG 101
                 ++kG
  CTQ27035.1 336 QKKG 339
                 **99 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 1.8e-11
     DUF3440 147 efkeiPtykrmcicilknDhlCkymgfsltkeek 180
                  +k+iP+++r+c ++l nD+ C+ ++fs tk+ +
  CTQ27035.1 352 GTKDIPSWRRVCKVLLNNDYWCRQLSFSPTKSSH 385
                 589****************************875 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   5.5e-21     2e-17       2     163 ..      30     234 ..      29     238 .. 0.86

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 5.5e-21
                  EEEE--SSCTCHHHHHHHHHHCTTH....EEEEEE-STB-HHHHHHHHHHHHHT..T-E.EEEEE-SCHHHHHHHHHH-S-THHHCHHHHHHTHHHHH CS
  PAPS_reduct   2 lvvsvsgGkdslVllhLalkafkpv....pvvfvdtghefpetiefvdeleery..glr.lkvyepeeevaekinaekhgsslyeeaaeriaKveplk 92 
                  + vs+sgGkds+V+lhL+ +a +       v+f+d + +f+ ti+  ++l+  y  +++ +  +  + + +++++++k   + +e   e +++  p  
   CTQ27035.1  30 ICVSFSGGKDSTVMLHLTAQAARLQgkkiCVLFIDWEAQFSCTIAHCEKLRALYadVIEtFYWVALPLTTQNALTQYKPQWQCWEPGTEWVRQPPPWA 127
                  789***************999887445558************************988888888888899999999***99999999666666666655 PP

                  H........................HHHCTTECEEE----CCCTTTTTTSSSEEECTTT-S............CEEE-CCCT--HHHHHHHHHHCT-- CS
  PAPS_reduct  93 k........................aLekldedalltGaRrdesksraklpiveidedfek............slrvfPllnWteedvwqyilrenip 154
                                             ++ +  a+l+G+R+des +r  +   +++++f +               ++Pl +W+  d+w +  +++ p
   CTQ27035.1 128 IthpgyfsfyqpgmsfeafvshfaeWFSQRRPAAVLVGIRADESLNRFMTISSQRKQRFADdkpwttsapgghAWYIYPLYDWKTADIWTWFAKSGEP 225
                  577888888888888888888888888888999************9987777777777777788888****999999********************* PP

                  B-CCCCTT- CS
  PAPS_reduct 155 ynpLydqgf 163
                  ynpLyd  +
   CTQ27035.1 226 YNPLYDLMY 234
                  *****9877 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.5e-08   0.00013       2      40 ..      30      68 ..      29      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.5e-08
                EEEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSS CS
  ATP_bind_3  2 vlvAvSgGlDSmaLllllaklkkklgiklvaihvdhglr 40
                ++v +SgG DS+++l+l+a+ ++ +g k++++ +d++ +
  CTQ27035.1 30 ICVSFSGGKDSTVMLHLTAQAARLQGKKICVLFIDWEAQ 68
                789********************************9876 PP

>> Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.6   5.7e+03      26      39 ..     147     160 ..     144     162 .. 0.81
   2 !   14.8   0.0   8.3e-06      0.03      13      46 ..     315     356 ..     307     360 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.6
  Phage_int_SAM_4  26 ikrflrflkkkape 39 
                      + +f++++ +++p+
       CTQ27035.1 147 VSHFAEWFSQRRPA 160
                      78999999989886 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 8.3e-06
  Phage_int_SAM_4  13 glserTiksYlsaikrflrflkkk........apeeltkedi 46 
                       ++e+T + Y ++i+ +lr+++kk        +p++++++di
       CTQ27035.1 315 SMPETTAEHYRNKIAVYLRWYQKKgmedipdtQPADIGTKDI 356
                      6899******************88999999999999999998 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.8e-05       0.1       3      52 ..      31      84 ..      29     112 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.8e-05
                EEE--SSHHHHHHHHH....HHHH-SEEEEEEEESS-TTSHHHHHHHHHHHHT- CS
        QueC  3 vvllSGGlDSttvlal....akkegkevealtfdYgqrhkkeleaakkiakelg 52
                 v +SGG DSt++l l    a+ +gk++++l +d++ + + ++   +k+ + + 
  CTQ27035.1 31 CVSFSGGKDSTVMLHLtaqaARLQGKKICVLFIDWEAQFSCTIAHCEKLRALYA 84
                688*********98762121445789*********9998888888888766443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2929.86
//
Query:       CTQ27036.1  [L=310]
Description: putative DNA-binding transcriptional regulator, LysR-type [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-18   66.3   0.0    3.5e-18   65.3   0.0    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    8.2e-14   51.5   0.0    1.3e-13   50.8   0.0    1.2  1  LysR_substrate  LysR substrate binding domain
  ------ inclusion threshold ------
      0.033   14.0   0.0       0.11   12.3   0.0    1.9  2  HTH_30          PucR C-terminal helix-turn-helix domain
      0.044   13.7   0.1       0.11   12.5   0.1    1.6  1  MarR_2          MarR family
       0.17   12.1   0.0       0.67   10.1   0.0    2.0  2  HTH_28          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   9.6e-22   3.5e-18       1      58 [.      12      69 ..      12      70 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 9.6e-22
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTea 58
                l++l +f+++ ++ s+++AA  L ++++avs++++rL+++l++pLf+R g+g+++T a
  CTQ27036.1 12 LNLLVIFECIYQHLSISKAAAMLFITPSAVSQSLQRLRQQLNDPLFVRVGKGMTPTTA 69
                689*****************************************************87 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   3.5e-17   1.3e-13      42     204 ..     134     295 ..     119     298 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 3.5e-17
                     ESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE.CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEEC....E CS
  LysR_substrate  42 gdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv.sledLadeplilleegsglrdlledalreaglkp....r 131
                     +++e+ ++lla +++Dl++++ p++ +  +++p  + + ++v++++hp  r+e + s e La+e + ++  + +  ++++    ++ +++    +
      CTQ27036.1 134 TTTESAEELLAYRQADLVFTRMPITNRATICQPYQTVQTLAVCRAGHP--RRETLtSVESLAQEFFTHYITNDPVIQRVQ----QSSIAWlnprN 222
                     345799*****************************************8..54444499******9999665555555555....55555555569 PP

                     EEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTCCCHHHHHHHHHHH CS
  LysR_substrate 132 valevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgrelspavrafidfl 204
                     +a++++s+ ++l+++   + i++lp+++ +      +l a+ +++  +p  ++y+ y++ + ++  +  +i +l
      CTQ27036.1 223 IAFRSDSFMTILNMINKTDLIGFLPSYLYDFISPTMQLHAINIDN-LFPdITIYINYHHASSQNHFLTELITIL 295
                     ****************************96666************.5555*********998887776666655 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     3e-05      0.11      11      42 ..      23      54 ..      14      58 .. 0.88
   2 ?   -3.6   0.0       2.9   1.1e+04      15      28 ..     189     202 ..     187     211 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3e-05
                TTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS- CS
      HTH_30 11 nggnisatAkaLhvHrnTlryRLrrieellgl 42
                ++ +is++A+ L++ +  +++ L+r+++ l+ 
  CTQ27036.1 23 QHLSISKAAAMLFITPSAVSQSLQRLRQQLND 54
                5689***********************99876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.9
                 HHHHHHHHTS-HHH CS
      HTH_30  15 isatAkaLhvHrnT 28 
                 ++  A++ + H+ T
  CTQ27036.1 189 VESLAQEFFTHYIT 202
                 66678888888765 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.9e-05      0.11      22      47 ..      25      50 ..      14      51 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.9e-05
                EEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 22 ltvgelarrlglsksavsrilkrLva 47
                l+++  a+ l +++savs+ l+rL +
  CTQ27036.1 25 LSISKAAAMLFITPSAVSQSLQRLRQ 50
                789999*****************976 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00019      0.67      12      38 ..      23      50 ..      14      52 .. 0.87
   2 ?   -1.6   0.0      0.86   3.1e+03      11      26 ..     178     200 ..     168     221 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00019
      HTH_28 12 Gh.svreaArelgisrrtvyrWikryee 38
                +h s++ aA+ l i+++ v++ ++r+++
  CTQ27036.1 23 QHlSISKAAAMLFITPSAVSQSLQRLRQ 50
                566***********************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.86
      HTH_28  11 aGhsvre.......aArelgisr 26 
                 aGh++re       +A+e+ +++
  CTQ27036.1 178 AGHPRREtltsvesLAQEFFTHY 200
                 57777775555555666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2320.69
//
Query:       CTQ27037.1  [L=249]
Description: periplasmic disulfide isomerase/thiol-disulphide oxidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-16   60.2   0.0    4.2e-16   59.4   0.0    1.4  1  Thioredoxin_2  Thioredoxin-like domain
    2.4e-06   27.8   0.0    9.3e-06   25.9   0.0    1.7  2  Thioredoxin_4  Thioredoxin
  ------ inclusion threshold ------
      0.035   13.9   0.2        6.5    6.5   0.0    2.2  2  TraF           F plasmid transfer operon protein
      0.068   12.6   0.2       0.16   11.4   0.2    1.6  1  DsbC_N         Disulfide bond isomerase protein N-terminus
       0.07   12.9   0.1       0.45   10.3   0.0    2.0  2  DSBA           DSBA-like thioredoxin domain
      0.091   12.8   0.4        6.4    6.8   0.0    2.3  2  Thioredoxin    Thioredoxin
       0.11   12.4   0.0       0.21   11.5   0.0    1.6  1  AhpC-TSA       AhpC/TSA family
       0.14   12.4   0.0       0.27   11.5   0.0    1.5  1  FliG_M         FliG middle domain


Domain annotation for each model (and alignments):
>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   1.9e-19   4.2e-16       6     106 ..     115     242 ..     111     245 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 1.9e-19
  Thioredoxin_2   6 kpvlvvftdpdCpyCkklkkelkel...ddvtvrvllfp.lkpsfepkavaiwcakekkkafkd.......................ieenvelar 74 
                      vl+vf+dp CpyCk++ ++ +++    +v++r+ll+  +kp++ + a+ai  + +++k++ d                       ++ n++l++
     CTQ27037.1 115 PIVLYVFADPFCPYCKQFWQQSRPWveaGKVQIRTLLVGvIKPESPATAAAILASSDPAKTWHDyeqsngkmaltipkaippekmkmLNVNQQLMD 210
                    579***********************9999*********************************************************9******** PP

  Thioredoxin_2  75 kygvrgtPtivfldgkeivarlpGyvpaeele 106
                     +g + tP+i + ++++++ +++G+ ++e+l 
     CTQ27037.1 211 DLGANVTPAIYYMNKDNMLQQVVGLPDKEKLH 242
                    ************************99999875 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   4.2e-09   9.3e-06       9      70 ..     110     168 ..     103     181 .. 0.74
   2 ?   -1.2   0.0      0.89     2e+03     125     145 ..     201     221 ..     171     231 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 4.2e-09
                    S-TT-SEEEEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEE-...---STTTHHHHHH CS
  Thioredoxin_4   9 GnpdApvtvieyedlrCphCakfeeeveklleeyidtGkvkfiirdf.pldkekeslkaamaa 70 
                    G +dAp+++++++d  Cp+C++f +++ + +e     Gkv+++   +  +++e+ ++ aa +a
     CTQ27037.1 110 GRKDAPIVLYVFADPFCPYCKQFWQQSRPWVEA----GKVQIRTLLVgVIKPESPATAAAILA 168
                    999***********************9998776....67776665553333333455555555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.89
                    HHHHHHHHHHHHT--SS-EEE CS
  Thioredoxin_4 125 lveaeskeakkagiestPtfi 145
                    ++  +++ ++ +g + tP ++
     CTQ27037.1 201 MLNVNQQLMDDLGANVTPAIY 221
                    445566677888999999886 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0029       6.5     131     151 ..     116     136 ..      95     154 .. 0.81
   2 ?    5.4   0.1    0.0064        14     175     203 ..     199     227 ..     187     235 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0029
        TraF 131 ygLlfFyrgkcpyceaqapil 151
                   L +F+++ cpyc+++++  
  CTQ27037.1 116 IVLYVFADPFCPYCKQFWQQS 136
                 56889************9875 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0064
        TraF 175 lpnarvdkgqaarlgvkrtPalvlvdpks 203
                 ++   v+++ +  lg + tPa++ +++++
  CTQ27037.1 199 MKMLNVNQQLMDDLGANVTPAIYYMNKDN 227
                 455668999999**************996 PP

>> DsbC_N  Disulfide bond isomerase protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   7.1e-05      0.16      33      50 ..      57      74 ..      49      77 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.1e-05
                E-EEESSSS-EE-S---- CS
      DsbC_N 33 vlYtdadgkyliqGnlyd 50
                 +Y ++dgk+ i G +yd
  CTQ27037.1 57 AIYLTPDGKHAISGYMYD 74
                69***************9 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0002      0.45       3      27 ..     119     143 ..     117     176 .. 0.76
   2 ?    0.2   0.0      0.25   5.5e+02     149     188 ..     198     241 ..     191     244 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0002
                 EEEEBTTBHHHHHHHHHHHHHHHHC CS
        DSBA   3 deffDvlCPyCylgkerleklaars 27 
                  +f D  CPyC++++++ +  +++ 
  CTQ27037.1 119 YVFADPFCPYCKQFWQQSRPWVEAG 143
                 68*************9877666665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHTT-SSSSEEEETTC....EEEESSSSHHHH CS
        DSBA 149 vkeavrentaaaqslgvtGvPtvvvdgk....rmvfGadrldtl 188
                   ++++ n+++  +lg++ +P+++  +k    ++v+G ++ ++l
  CTQ27037.1 198 KMKMLNVNQQLMDDLGANVTPAIYYMNKdnmlQQVVGLPDKEKL 241
                 56788999999999999999999885544567788887777666 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0029       6.4       9      38 ..     105     134 ..      98     167 .. 0.69
   2 ?    4.0   0.1     0.021        47      56      99 ..     204     243 ..     185     247 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0029
                  HHHHHHTTTSSEEEEEEE-TTSHHHHCHHH CS
  Thioredoxin   9 nFeeevakekklvlveFyApwCghCkalaP 38 
                  ++ ++ +k++  vl  F  p+C+ Ck++  
   CTQ27037.1 105 HWLQDGRKDAPIVLYVFADPFCPYCKQFWQ 134
                  55556666556666677779******9855 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.021
                  EETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHH CS
  Thioredoxin  56 vdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaa 99 
                  v    n++l ++++ +  P+++ +++++  ++++g  +kekl  
   CTQ27037.1 204 V----NQQLMDDLGANVTPAIYYMNKDNMLQQVVGLPDKEKLHI 243
                  3....5667778888899******************99999975 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.3e-05      0.21      24      56 ..     112     144 ..     102     232 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.3e-05
                 TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCC CS
    AhpC-TSA  24 kgkpvvlffypkdwcpvCttelpalaklyeefk 56 
                 k+ p+vl++++  +cp+C++ +++ +  +e+ k
  CTQ27037.1 112 KDAPIVLYVFADPFCPYCKQFWQQSRPWVEAGK 144
                 6689***************99988877775544 PP

>> FliG_M  FliG middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.27       4      27 ..     151     174 ..     148     175 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                 HHHHHTTS-HHHHHHHHHTS-HHH CS
      FliG_M   4 lanllknEhPqtiAliLsyLdpeq 27 
                 l+ ++k E+P t+A iL+  dp++
  CTQ27037.1 151 LVGVIKPESPATAAAILASSDPAK 174
                 8899**************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1925.53
//
Query:       CTQ27038.1  [L=187]
Description: alkyl hydroperoxide reductase, C22 subunit, thioredoxin-like (detoxification of hydroperoxides) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-32  112.6   0.1    1.3e-32  112.3   0.1    1.1  1  AhpC-TSA    AhpC/TSA family
    5.2e-12   45.7   0.0    6.5e-12   45.4   0.0    1.1  1  Redoxin     Redoxin
      1e-06   28.5   0.1    1.9e-06   27.6   0.1    1.5  1  1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
    4.1e-05   23.5   0.0    0.00027   20.9   0.0    2.1  2  SCO1-SenC   SCO1/SenC
  ------ inclusion threshold ------
      0.069   14.1   0.2       0.11   13.5   0.2    1.3  1  DUF3986     Protein of unknown function (DUF3986)


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   0.1   3.7e-36   1.3e-32       7     123 ..      10     133 ..       4     134 .. 0.94

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 3.7e-36
                 --EEE...STTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.....SSEEEE-TTSHHHHHT CS
    AhpC-TSA   7 dfelk...nadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes....lnfpllsDeegkvakay 98 
                  f+ +   n+++ +v+ +d +g++ v+ffyp+d+++vC+tel + a++yee++++gv+v+ vs+d++++hk+++   +    +++ ++ D++g++ +++
  CTQ27038.1  10 PFKNQafkNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSEtiakIKYAMIGDPTGALTRNF 108
                 45544444999**************************************************************************************** PP

                 T-EETTTTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  99 gvlkeekglalratfvidkegkiry 123
                 + ++e++gla ratfv+d++g+i++
  CTQ27038.1 109 DNMREDEGLADRATFVVDPQGIIQA 133
                 ***********************97 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   1.8e-15   6.5e-12      16     139 ..      19     144 ..       5     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 1.8e-15
                 TCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH.....TT-TSEEEE-TTSHHHHHTT-TTEEE. CS
     Redoxin  16 tdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk.....eglkfpvlsDgsaaftkalGlrleeda 109
                  +  +v+ ++ +g+  v +f+p+ f+ +C +e+ ++++ +e+l + gvdv  v++d+  f  ++w +      ++k+ ++ D+++a+t++++ +++ed 
  CTQ27038.1  19 GEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT-HFTHKAWHSssetiAKIKYAMIGDPTGALTRNFD-NMRED- 114
                 6677888899*****************************9999*******7777665.5677888888**9*999*****************.88998. PP

                 GGGEEE-EEEEEEETTEEEEEEESSSCHT.S CS
     Redoxin 110 seglrtpryavidedgkvvylevepepet.e 139
                  egl+ ++++v+d +g + ++ev +e  + +
  CTQ27038.1 115 -EGLADRATFVVDPQGIIQAIEVTAEGIGrD 144
                 .55699**************99988765444 PP

>> 1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   5.4e-10   1.9e-06       3      30 ..     156     181 ..     154     186 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 5.4e-10
                 HHHHHH.T-BB-TTT.TBT-EEE---SSH CS
  1-cysPrx_C   3 Qladkh.gvatPAnWkpGdkvivpPpate 30 
                 Q++++h g+++PA Wk+G+ ++   +++ 
  CTQ27038.1 156 QYVASHpGEVCPAKWKEGEATL---APSL 181
                 9*********************...6665 PP

>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   7.5e-08   0.00027      13      67 ..      23      75 ..      10     102 .. 0.89
   2 ?    0.2   0.0      0.19   6.7e+02      10      43 ..     139     172 ..     135     181 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 7.5e-08
   SCO1-SenC 13 avteedlegkpslvffgFthCpdvCpttlanmaevldalgeeaekvqplfiTvDP 67
                +vte+d eg++s++ff  +  + vCpt+l ++a+ +++l++    v++++++ D 
  CTQ27038.1 23 EVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTDT 75
                79************99999999*****************998..67777777775 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.19
   SCO1-SenC  10 dgeavteedlegkpslvffgFthCpdvCpttlan 43 
                 +g  ++ +dl  k+ +++++ +h  +vCp++ ++
  CTQ27038.1 139 EGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKE 172
                 5666778889999999999999999****98776 PP

>> DUF3986  Protein of unknown function (DUF3986)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2     3e-05      0.11      28      77 ..      28      77 ..      12      87 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3e-05
     DUF3986 28 knedvWvvyfdf.edygvekdelslskf.dkyalfdkyGykvysikakdlde 77
                  e+ W v+f +  d++   + ++l+ + d+y+  +k G+ vys+ ++d ++
  CTQ27038.1 28 DTEGRWSVFFFYpADFTFVCP-TELGDVaDHYEELQKLGVDVYSV-STDTHF 77
                45789**99988577766555.8999998****************.666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1503.09
//
Query:       CTQ27039.1  [L=521]
Description: alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-44  150.1   6.6    1.2e-43  149.4   6.6    1.3  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    5.7e-22   78.3   1.1    1.5e-20   73.7   1.0    2.2  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    2.8e-16   59.9   4.0      1e-14   54.8   0.5    3.2  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      2e-09   37.1   8.1     0.0055   15.8   0.4    3.6  4  GIDA            Glucose inhibited division protein A
    7.3e-09   35.6   0.0    2.4e-08   33.9   0.0    2.0  1  Thioredoxin_3   Thioredoxin domain
    1.3e-05   24.5  16.8      0.082   12.0   1.1    4.6  5  FAD_binding_2   FAD binding domain
    1.6e-05   23.8   7.6       0.12   11.0   0.3    3.4  3  HI0933_like     HI0933-like protein
    4.2e-05   23.1  14.8    0.00025   20.6   1.6    3.4  3  FAD_oxidored    FAD dependent oxidoreductase
     0.0003   20.1   0.9     0.0062   15.8   0.1    2.3  2  Thi4            Thi4 family
    0.00047   19.4   1.9      0.026   13.7   0.1    2.7  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    0.00088   18.6   3.4     0.0085   15.4   0.5    2.3  2  FAD_binding_3   FAD binding domain
    0.00092   19.4   2.5       0.02   15.1   0.2    3.2  3  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0074   16.5   3.5      0.089   13.0   0.0    3.3  3  Glutaredoxin    Glutaredoxin
  ------ inclusion threshold ------
      0.011   15.3  15.7          1    8.9   0.5    3.9  5  DAO             FAD dependent oxidoreductase
      0.013   14.0   0.0      0.032   12.7   0.0    1.6  2  FMO-like        Flavin-binding monooxygenase-like
      0.013   14.8   0.9       0.14   11.5   0.1    2.3  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.019   15.0   4.7       0.36   10.8   0.1    3.4  3  NAD_binding_9   FAD-NAD(P)-binding
       0.13   11.3   2.5         16    4.4   0.1    3.0  3  Lycopene_cycl   Lycopene cyclase protein
       0.47   10.9   2.7        1.3    9.5   0.1    2.7  2  NAD_binding_7   Putative NAD(P)-binding
        1.2    7.9   3.4         15    4.3   0.1    2.9  3  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   6.6   1.4e-46   1.2e-43       1     291 [.     213     501 ..     213     506 .. 0.90

  Alignments for each domain:
  == domain 1  score: 149.4 bits;  conditional E-value: 1.4e-46
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH........HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias........evvkklnqgielllgeevvkidpgkkkvklekk 90 
                  +dv+++G+Gp G aaa + a++g+++ l+   g+ ++g++l +  ++++ + ++++          +v+ +n +++      ++k+ p++ +  l + 
   CTQ27039.1 213 YDVLIVGSGPSGAAAAVYSARKGIRTGLM---GERFGGQVLDTVDIENYISVPKTEGqklagalkAHVNDYNVDVIDSQS--ATKLTPAATEGGLHQI 305
                  69***************************...777899999999*********9999999***99999999988666666..7788777766666666 PP

                  ECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  91 kegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaa 188
                  ++ ++  +++ ++++AtG++ r++++pG+ ++ +k+v ++ ++++   k ++  ++v+GgG+ GvE A+ la + ++vtl+e ++++       + + 
   CTQ27039.1 306 ETASGAVLKARSVIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKR--VAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK------ADQV 395
                  668899****************************************988887..********************************97......8899 PP

                  HHHHHHHT.TEEEEESCEEEEEEETTE.....EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGCT CS
                  xxxxxxxx.xxxxxxxxxxxxxxxxxx.....xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 189 leealeke.Gvevklgtsvkeidgnge.....kle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDvag 279
                  l+++++   +v++ l+++ +e++g+g+     +++  v +d++ i+   ++v +G+ p+t+ l  +  +e ++ g i +d +++tnv+g++a+GD++ 
   CTQ27039.1 396 LQDKVRSLkNVDIILNAQTTEVKGDGSkvtglQYRdRVSGDEHHIALAGIFVQIGLLPNTTWL--EGAVERNRMGEIIIDAKCETNVKGVFAAGDCT- 490
                  999998888******************77755444899999999******************8..889*****************************. PP

                  ECCSS--HHHHH CS
                  xxxxxxxxxxxx RF
  Pyr_redox_2 280 gkggpelaqaAv 291
                   +  ++++  A 
   CTQ27039.1 491 -TVPYKQIIIAA 501
                  .55555555555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.2    0.0071       6.4     165     190 ..     213     238 ..     163     252 .. 0.73
   2 !   73.7   1.0   1.6e-23   1.5e-20      13     305 .]     204     487 ..     203     487 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0071
  Pyr_redox_3 165 qkvvViGgknSavDaAlelvrkgaeV 190
                   +v+++G + S++ aA+  +rkg + 
   CTQ27039.1 213 YDVLIVGSGPSGAAAAVYSARKGIRT 238
                  55666666666666666655555544 PP

  == domain 2  score: 73.7 bits;  conditional E-value: 1.6e-23
  Pyr_redox_3  13 aielkkagledylilEkgnignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelpiklfeeVesvkk. 109
                  a el++ +  d+li+  g  g++   y +++ +  +   +e+++ + l  +  e+     ++ +k ++++++  l++ ++ +++++   ++ +++++ 
   CTQ27039.1 204 AEELNQRDAYDVLIVGSGPSGAAAAVYSARKGI-RTGLMGERFGGQVLDTVDIENY----ISVPKTEGQKLAGALKAHVNDYNVDVIDSQSATKLTPa 296
                  678888888899999999999999999876655.5578899999888888877765....5788999************************9999995 PP

  Pyr_redox_3 110 ..edegfevetske.tyeAkkviiAtGefdkPnklnipGeek.lvkhyskvkefh..kyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiek 201
                    e++  ++et ++ +++A++viiAtG   k + +n+pGe++   k   + ++++   ++g++v+ViGg+nS+v+aA++l+    +Vt++    e+++
   CTQ27039.1 297 atEGGLHQIETASGaVLKARSVIIATGA--KWRNMNVPGEDQyRTKGVTYCPHCDgpLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA 392
                  434566*****99879***********9..88999******9423444445554321699*********************************98888 PP

  Pyr_redox_3 202 eesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvk....tedgkkvevkddvvla.tGykpdlsflkkslfeldedgrpvlteete 294
                  ++         + ++++++l    +++++ na+++e+k + ++++        +g+++++    +++ +G  p+++ l+   +e+++ g++ ++ +++
   CTQ27039.1 393 DQ---------VLQDKVRSLK---NVDIILNAQTTEVKGDGSKVTGLqyrdRVSGDEHHIALAGIFVqIGLLPNTTWLE-GAVERNRMGEIIID-AKC 476
                  74.........4455555543...3789999999999987777643311122234444444455555577777777777.78888788888776.679 PP

  Pyr_redox_3 295 etnvpglflaG 305
                  etnv+g+f aG
   CTQ27039.1 477 ETNVKGVFAAG 487
                  9********99 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.2     0.052        47       2      67 ..     215     294 ..     214     310 .. 0.65
   2 !   54.8   0.5   1.1e-17     1e-14       1      80 [.     357     431 ..     357     435 .. 0.96

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.052
                 EEEECSSHHHHHHHHHH...........HHTTSEE.EEEESSSSSS..TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgal...........aelgkkV.tvversdkll..rllDeeaskilqeklekngievllntkveeie 67 
                 v++vG+G +g  +A +             ++g +V   v+ ++ +   + ++++++ +l+ ++ + +++v+ ++++++++
  CTQ27039.1 215 VLIVGSGPSGAAAAVYSarkgirtglmgERFGGQVlDTVDIENYISvpKTEGQKLAGALKAHVNDYNVDVIDSQSATKLT 294
                 899*******9999999555555555555555666555555555555566666677777777777777777666666666 PP

  == domain 2  score: 54.8 bits;  conditional E-value: 1.1e-17
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEECSEEEEEEEEETTSEEEEEEET CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekn.gievllntkveeiegsedgvesvklkd 80 
                 +v+v+GgG++g+E+A  la +  +Vt++e ++++       a ++lq+k++ + +++++ln++++e++g++++v++++ +d
  CTQ27039.1 357 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK------ADQVLQDKVRSLkNVDIILNAQTTEVKGDGSKVTGLQYRD 431
                 79*********************************......**********999*******************99998875 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.4   6.1e-06    0.0055       1      30 [.     214     243 ..     214     266 .. 0.85
   2 !    8.5   0.1     0.001      0.93     106     155 ..     278     329 ..     261     343 .. 0.72
   3 !   15.7   0.1   6.6e-06    0.0059       2      31 ..     358     391 ..     357     420 .. 0.81
   4 ?   -2.3   0.0         2   1.8e+03     123     149 ..     472     502 ..     461     509 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.1e-06
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLith 30 
                 dv ++G G +G +AA+ +ar+G+++ L+ +
  CTQ27039.1 214 DVLIVGSGPSGAAAAVYSARKGIRTGLMGE 243
                 799***********************9944 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.001
                 HTSTTEEEEE.S-EEEEEECT..TEEEEEEETTS-EEEECEEEE--TT-BT-E CS
        GIDA 106 enepnleiie.eeveelivee..kkvkgvvtedgetikakavviatGtflkgk 155
                 ++  n+++i  +++++l +    + ++ + t++g+++ka++v+iatG+  +  
  CTQ27039.1 278 ND-YNVDVIDsQSATKLTPAAteGGLHQIETASGAVLKARSVIIATGAKWRNM 329
                 44.6677664156777877556678899*******************954444 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 6.6e-06
                 EEEE-SSHHHHHHHHHHHHTT--EEEE....ES- CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLi....thk 31 
                 v ViGgG +G+eAA+ +a    +v+L+     +k
  CTQ27039.1 358 VAVIGGGNSGVEAAIDLAGIVEHVTLLefapEMK 391
                 89*****************999999995544333 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2
                 ECT...TEEEEEEETTS.-EEEECEEEE--T CS
        GIDA 123 vee...kkvkgvvtedg.etikakavviatG 149
                 ++    ++vkgv  + + +t+  k+++ia+G
  CTQ27039.1 472 IDAkceTNVKGVFAAGDcTTVPYKQIIIAAG 502
                 4334445566665543314555556666666 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   2.7e-11   2.4e-08       7      73 ..     126     194 ..     120     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 2.7e-11
                    SSSSTTCH.HHHHHHHHHCHCCTCECEEECC.TTHHHHHHCT-SSSSEEECTTCEEEESS---CCHHHH CS
  Thioredoxin_3   7 gpgCakCp.klekavkeaaaekgikaevekv.tdfeeiekygVmsvPalvidgkvvvsGkvpseeeirk 73 
                    + +C++Cp  ++++   a+ +++ik + ++  t  +ei +++Vm vPa++++g+   +G++  +e ++k
     CTQ27039.1 126 SLSCHNCPdVVQALNLMAVLNPRIKHTAIDGgTFQNEITERNVMGVPAVFMNGQEFGQGRMTLTEIVAK 194
                    679*****555566667777779***999995777788*********************9888777766 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   1.1   9.2e-05     0.082       1      27 [.     214     240 ..     214     250 .. 0.91
   2 !   10.1   0.1   0.00034       0.3     137     227 ..     263     350 ..     242     354 .. 0.81
   3 ?    4.5   1.5     0.017        15       2      31 ..     358     387 ..     357     395 .. 0.83
   4 ?   -1.8   0.0       1.4   1.3e+03     147     193 ..     396     443 ..     393     469 .. 0.79
   5 !    6.0   0.0    0.0061       5.5     373     406 ..     467     494 ..     460     504 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.2e-05
                    SEEEE--SHHHHHHHHHHHHTTT-EEE CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvav 27 
                    Dv+++GsG +G aAA+  a++G ++ +
     CTQ27039.1 214 DVLIVGSGPSGAAAAVYSARKGIRTGL 240
                    9*********************98865 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00034
                    ..HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG..........GSSSBSSGTT-S- CS
  FAD_binding_2 137 lvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgrallkellgaaaeaettnapavtG 227
                     ++g++l+ +l +++++++vd+ ++ +a++L  +     G   + ++ ++   ++a+ v++atg+  r++  +  +++ ++ +t  p+++G
     CTQ27039.1 263 KTEGQKLAGALKAHVNDYNVDVIDSQSATKL--TPAATEGGLHQIETASG-AVLKARSVIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDG 350
                    469****************************..45666776666444444.4589*********988866667779999999999999998 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.017
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESS CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavveke 31 
                    v ViG+G +G  AA+ +a     v+++e +
     CTQ27039.1 358 VAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 387
                    89***************9877777777755 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.4
                    HHHHHHTCT.EEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEES CS
  FAD_binding_2 147 lvesarkag.vdfqerteadeLivedgrvtGavvenpesgrevrirak 193
                    l +++r+++ vd+  +++ +e+  ++ +vtG   +++ sg e+ i+  
     CTQ27039.1 396 LQDKVRSLKnVDIILNAQTTEVKGDGSKVTGLQYRDRVSGDEHHIALA 443
                    667788888899999999999988777999999999999988876654 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.0061
                    S-EEEBETTSBESTTEEESSBTEEE-STCEESSS CS
  FAD_binding_2 373 mgGvetdengrvldadgqpipGLYAaGevaaggv 406
                    mg + +d+++++      +++G +AaG ++ + +
     CTQ27039.1 467 MGEIIIDAKCET------NVKGVFAAGDCTTVPY 494
                    555889999999......***********97665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.4     0.002       1.8       1      29 [.     213     241 ..     213     247 .. 0.89
   2 !    8.6   0.1   0.00076      0.68     107     165 ..     265     325 ..     261     329 .. 0.87
   3 !   11.0   0.3   0.00014      0.12       2      34 ..     357     389 ..     356     396 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.002
                  -SEEEE--SHHHHHHHHHHHHTT--EEEE CS
  HI0933_like   1 kdviviGgGaAGlmaAisaakrgkrVlll 29 
                  +dv+++G G++G  aA+  a++g r+ l+
   CTQ27039.1 213 YDVLIVGSGPSGAAAAVYSARKGIRTGLM 241
                  59*****************9999988765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00076
                  -CHHHHHHHHHHHHHHT-EEE-S--EEEE..ECETTE.EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 107 kaedivdallkelkeagvklrletevksv..ekeedgkfrvktkseeeleadklvlAtGGl 165
                  + +++  al++++++ +v++  +++ +++  +++e+g ++++t s+  l+a+++++AtG +
   CTQ27039.1 265 EGQKLAGALKAHVNDYNVDVIDSQSATKLtpAATEGGLHQIETASGAVLKARSVIIATGAK 325
                  567888899***********9999999995557788899****9***************75 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00014
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakk 34 
                  +v+viGgG +G+ aAi +a   ++V+lle a++
   CTQ27039.1 357 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 389
                  79**************************97765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   1.6   2.7e-07   0.00025       1      31 [.     214     244 ..     214     281 .. 0.89
   2 ?    3.7   2.1     0.036        33       2      28 ..     358     384 ..     357     390 .. 0.80
   3 !    6.2   0.1    0.0062       5.5      88     130 ..     391     435 ..     375     447 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.7e-07
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveer 31 
                   Dv++vG+gp+G aAA+ +ar+G ++ L  er
    CTQ27039.1 214 DVLIVGSGPSGAAAAVYSARKGIRTGLMGER 244
                   9************************998654 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.036
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLv 28 
                   v V+GGg +Gv AAi  a     v L+
    CTQ27039.1 358 VAVIGGGNSGVEAAIDLAGIVEHVTLL 384
                   89*************877655555555 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0062
  FAD_oxidored  88 vakavleeml.aeagvtvllntrlvevekegkriesvtveske.g 130
                    a +vl++ + + ++v+++ln++ +ev+ +g ++++++ +++  g
    CTQ27039.1 391 KADQVLQDKVrSLKNVDIILNAQTTEVKGDGSKVTGLQYRDRVsG 435
                   47899999995559*****************9******9887655 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1     7e-06    0.0062       6      49 ..     201     243 ..     198     285 .. 0.89
   2 ?    2.4   0.1     0.083        75      19      38 ..     357     376 ..     352     386 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7e-06
                 HHHHHHHHHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4   6 eryfedllkyaesDvvivGaGssGLtaayylakkpdlkvailer 49 
                 +r+ e+l +    Dv+ivG+G+sG +aa y a+k ++++ ++ +
  CTQ27039.1 201 KRAAEELNQRDAYDVLIVGSGPSGAAAAVYSARK-GIRTGLMGE 243
                 5778899999999********************9.998877755 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.083
                 EEEEE--SHHHHHHHHHHHH CS
        Thi4  19 DvvivGaGssGLtaayylak 38 
                  v+++G+G sG+ aa  la 
  CTQ27039.1 357 RVAVIGGGNSGVEAAIDLAG 376
                 599************99885 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.026        24     187     206 ..     208     227 ..     189     239 .. 0.76
   2 !   13.7   0.1   2.9e-05     0.026     143     217 ..     309     381 ..     279     391 .. 0.65
   3 ?   -1.8   0.0       1.5   1.3e+03     285     332 ..     396     443 ..     392     450 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.026
  K_oxygenase 187 ellakkriaVvGsGqSaaei 206
                  +++++ ++++vGsG S+a  
   CTQ27039.1 208 NQRDAYDVLIVGSGPSGAAA 227
                  4788999********99865 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.9e-05
  K_oxygenase 143 eeeelearnlvlgvGte...pkiPevleklegkervvHsseylerkee.llakkriaVvGsGqSaaeifedllrrqkkv 217
                  +   l+ar++++++G +    ++P   +  +  +      +y  + +  l ++kr+aV+G+G S+ e + dl+   ++v
   CTQ27039.1 309 SGAVLKARSVIIATGAKwrnMNVPGEDQYRT--KG----VTYCPHCDGpLFKGKRVAVIGGGNSGVEAAIDLAGIVEHV 381
                  4567788888888885411134454333222..22....23333333335789******************99876654 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.5
  K_oxygenase 285 yeqkvkgeerlrllpnrevesaeaegkgeveltlrneesgeeetlevd 332
                   ++kv++ +++ ++ n + ++++ +g++ + l++r++ sg+e+ +   
   CTQ27039.1 396 LQDKVRSLKNVDIILNAQTTEVKGDGSKVTGLQYRDRVSGDEHHIALA 443
                  57888889999999************999999*999999998877655 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.5   9.5e-06    0.0085       2      29 ..     213     240 ..     212     249 .. 0.90
   2 ?    3.6   0.1     0.036        32       4      64 ..     358     414 ..     356     447 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.5e-06
                    EEEEEE--SHHHHHHHHHHHHTTHHEEE CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvl 29 
                    +dVlIVG+Gp+G+ +a   +++G+r+ l
     CTQ27039.1 213 YDVLIVGSGPSGAAAAVYSARKGIRTGL 240
                    69**********************9755 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.036
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHH CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrila 64 
                    V+++G+G +G+ +a  L+   v++v +    + +++ +ad + q  +++l+++ +  +++ 
     CTQ27039.1 358 VAVIGGGNSGVEAAIDLAGI-VEHVTL---LEFAPEMKADQVLQDKVRSLKNVDIILNAQT 414
                    99************999988.775544...3456667777777777777777766555555 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   2.3e-05      0.02       1      37 [.     217     251 ..     217     263 .. 0.87
   2 ?   -1.5   0.0       3.5   3.2e+03      14      29 ..     272     289 ..     266     291 .. 0.76
   3 ?    2.5   0.1      0.19   1.7e+02       1      26 [.     360     385 ..     360     390 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.3e-05
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-E CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraas 37 
                    IvG+G sG++aA + a++g++  l   ++r+GG++ +
     CTQ27039.1 217 IVGSGPSGAAAAVYSARKGIRTGLM--GERFGGQVLD 251
                    9*******************99997..8889998765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.5
                    HHHCC..TEEEEEE-SSS CS
  NAD_binding_8  14 lLaka..gfdvlllekrd 29 
                    +L+ +  +++v+++++++
     CTQ27039.1 272 ALKAHvnDYNVDVIDSQS 289
                    5666566999*****986 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.19
                    EE--SHHHHHHHHHHHCCTEEEEEE- CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvllle 26 
                    ++G+G sG  aA  La    +v+lle
     CTQ27039.1 360 VIGGGNSGVEAAIDLAGIVEHVTLLE 385
                    8***********99997666788877 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.28   2.5e+02      15      45 ..      10      40 ..       8      52 .. 0.83
   2 !   13.0   0.0   9.9e-05     0.089       3      58 ..     124     179 ..     123     181 .. 0.82
   3 ?   -0.5   0.5       1.6   1.4e+03       6      12 ..     340     348 ..     337     349 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.28
                  HHHHHHHTTGGEEEEEGCCSHHHHHHHHHHH CS
  Glutaredoxin 15 akrlLkelgvkfeeidvdkdeeireelkels 45
                   k++L++l  ++e i  ++d++  +e+kel+
    CTQ27039.1 10 LKAYLEKLTKPVELIATLDDSAKSAEIKELL 40
                  6999****************98888888875 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 9.9e-05
                   EEES..TSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTE CS
  Glutaredoxin   3 lftk..ptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvfidgk 58 
                   +++   ++Cp+ ++a +l+  l+ +++   +d    ++ e+ e+ +v+ vP vf +g+
    CTQ27039.1 124 YYSLscHNCPDVVQALNLMAVLNPRIKHTAIDGG-TFQNEITER-NVMGVPAVFMNGQ 179
                   5555556777777777777888888999999995.9********.***********98 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.6
                   S..TSSHHH CS
  Glutaredoxin   6 k..ptCpyC 12 
                   k  ++Cp+C
    CTQ27039.1 340 KgvTYCPHC 348
                   45589**** PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.5    0.0011         1       1      22 [.     214     235 ..     214     248 .. 0.87
   2 ?    7.8   0.1    0.0025       2.2     146     209 ..     267     329 ..     263     350 .. 0.73
   3 ?    7.1   1.7     0.004       3.6       1      27 [.     357     385 ..     357     394 .. 0.86
   4 ?   -2.7   0.0       3.7   3.3e+03     158     185 ..     402     431 ..     391     446 .. 0.66
   5 ?   -2.8   0.0       4.1   3.7e+03     167     205 ..     478     506 ..     457     514 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
                 EEEEECTSHHHHHHHHHHHHTT CS
         DAO   1 dvviiGGGiiGlstAyeLarrg 22 
                 dv+i+G+G  G+++A + ar+g
  CTQ27039.1 214 DVLIVGSGPSGAAAAVYSARKG 235
                 8*****************9998 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHHTT-EEEESECEEEEEE..EETCEEEEEEECT.EEEEEEEEEEE--GGGHHHH.HT CS
         DAO 146 akltaalaraaealGveilegtevtglee..edgkvwgverttp.gendaadavVnaaGawsdll.gl 209
                 +kl+ al + + +  v+++    +t+l    ++g+++++  +t+ g++ +a+ v++a+Ga    + ++
  CTQ27039.1 267 QKLAGALKAHVNDYNVDVIDSQSATKLTPaaTEGGLHQI--ETAsGAVLKARSVIIATGAK---WrNM 329
                 578889999999999***********9432244888888..777799945599******98...5333 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.004
                 EEEEECTSHHHHHHHHHHHHTT....EEEEE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg....Vtlle 27 
                 +v++iGGG  G+ +A +La  g    Vtlle
  CTQ27039.1 357 RVAVIGGGNSGVEAAIDLA--GivehVTLLE 385
                 59****************4..55568***99 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 3.7
                 HTT.-EEEESECEEEEEEEETCEEEEE.EE CS
         DAO 158 alG.veilegtevtgleeedgkvwgve.rt 185
                 +l  v+i+++++ t+++ ++ kv+g++ r+
  CTQ27039.1 402 SLKnVDIILNAQTTEVKGDGSKVTGLQyRD 431
                 443399999999999877768888886633 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 4.1
                 ECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH CS
         DAO 167 tevtgleeedgkvwgverttpgendaadavVnaaGawsd 205
                 t+v+g+ +  g+ ++v          ++++++aaG +++
  CTQ27039.1 478 TNVKGVFA-AGDCTTV---------PYKQIIIAAGEGAK 506
                 33444311.1222333.........57889999997665 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.2   1.1e+03     185     223 ..     214     253 ..     206     259 .. 0.76
   2 ?   12.7   0.0   3.6e-05     0.032     160     211 ..     332     383 ..     311     397 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.2
    FMO-like 185 rvlviGlGnsggdiavelsrta.eqvllstrsGswvlsrv 223
                  vl++G G sg+  av  +r+  +  l+  r G+ vl+ v
  CTQ27039.1 214 DVLIVGSGPSGAAAAVYSARKGiRTGLMGERFGGQVLDTV 253
                 5999******999999877765145678888888888766 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.6e-05
    FMO-like 160 pGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggdiavelsrtaeqvll 211
                 pG ++++ + +    + +   fkgkrv viG Gnsg + a++l+   e+v l
  CTQ27039.1 332 PGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTL 383
                 555555555555555556668**********************999888865 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1       0.2   1.8e+02      29      52 ..     213     236 ..     196     245 .. 0.83
   2 ?   11.5   0.1   0.00015      0.14      30      65 ..     357     392 ..     347     423 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.2
                  -EEEEESTSHHHHHHHHHHHHTT- CS
  AlaDh_PNT_C  29 akvlviGgGvaGlqAiatakglga 52 
                    vl++G G  G +A+  +++ g 
   CTQ27039.1 213 YDVLIVGSGPSGAAAAVYSARKGI 236
                  579************998887665 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00015
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparle 65 
                  +v viGgG  G++A+   +g+  +Vt+l+  p+ + 
   CTQ27039.1 357 RVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA 392
                  89***************************9998764 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2      0.16   1.4e+02       2      14 ..     217     229 ..     216     237 .. 0.87
   2 ?   10.8   0.1   0.00041      0.36     108     155 ..     273     324 ..     267     325 .. 0.78
   3 ?    1.9   0.0      0.22     2e+02       1      17 [.     359     375 ..     359     401 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.16
  NAD_binding_9   2 ivGaGprGlavle 14 
                    ivG Gp+G+a++ 
     CTQ27039.1 217 IVGSGPSGAAAAV 229
                    9********9985 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00041
  NAD_binding_9 108 larlpegvtvevh.raevvdleeradg..q.avlladgaslaadaVvLAlGh 155
                    l++  ++ +v+v+ ++++++l+++a++    ++ +a+ga l+a++V++A+G 
     CTQ27039.1 273 LKAHVNDYNVDVIdSQSATKLTPAATEggLhQIETASGAVLKARSVIIATGA 324
                    45555677899995669*****9886633358999***************95 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.22
  NAD_binding_9   1 aivGaGprGlavlerLl 17 
                    a++G+G +G+ ++  L+
     CTQ27039.1 359 AVIGGGNSGVEAAIDLA 375
                    89*********999886 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.018        16       1      30 [.     214     241 ..     214     248 .. 0.88
   2 ?    1.6   0.0      0.13   1.1e+02     114     142 ..     297     325 ..     253     342 .. 0.72
   3 ?    3.9   0.1     0.025        22       2      69 ..     358     419 ..     357     468 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.018
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvli 30 
                    Dv+++G+Gp g + A  +  a++g++ +l+
     CTQ27039.1 214 DVLIVGSGPSGAAAAVYS--ARKGIRTGLM 241
                    9***********999999..9999988776 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.13
  Lycopene_cycl 114 eeeageslvvleggrkirarlvvdargla 142
                    + e g  ++ ++ g  ++ar v+ a+g+ 
     CTQ27039.1 297 ATEGGLHQIETASGAVLKARSVIIATGAK 325
                    3344889999*****************54 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.025
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsllfpnnyvWsdefedlgaleecvehsWsgtivyl 69 
                    v+viG+G  g+  A  l  a    +v+l+e +p++   +++v +d  + l++ + ++++  + t+v+ 
     CTQ27039.1 358 VAVIGGGNSGVEAAIDL--AGIVEHVTLLEFAPEM--KADQVLQDKVRSLKNVDIILNA--QTTEVKG 419
                    89***************..99999******99998..7777777777777754444444..3444544 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.85   7.7e+02       9      39 ..     214     244 ..     209     331 .. 0.66
   2 ?    9.5   0.1    0.0014       1.3       5      41 ..     353     393 ..     352     486 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.85
  NAD_binding_7   9 kvlvvGgGevAarkvrklleagakvtvvape 39 
                     vl+vG G+ +a  +   +++g +  ++ ++
     CTQ27039.1 214 DVLIVGSGPSGAAAAVYSARKGIRTGLMGER 244
                    6899999998887666666666555555555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0014
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtv..vapev..k 41 
                    +kgk+v v+GgG+ + + +  l+    +vt+   ape+   
     CTQ27039.1 353 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLleFAPEMkaD 393
                    689*********************99****95557775331 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.3     0.079        71       1      21 [.     214     234 ..     214     240 .. 0.87
   2 ?    0.5   0.0      0.24   2.2e+02     154     210 ..     267     325 ..     263     331 .. 0.84
   3 ?    4.3   0.1     0.017        15       1      32 [.     357     385 ..     357     413 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.079
                     EEEEE--SHHHHHHHHHHHHH CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalaka 21 
                     +++ivG G++G  aA + a+ 
      CTQ27039.1 214 DVLIVGSGPSGAAAAVYSARK 234
                     699*********999987775 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.24
                     HHHHHHHHHHHHHCT-EEEE--EEEEEE-T..TS-EEEEEETTS-EEE-SEEEE-SGGG CS
  Trp_halogenase 154 alyakfLrrvaearGvtrvegkvvevqlde..dgrveslrledgreveadlfiDcsGfr 210
                     +++a  L+++ ++ +v++++ ++++  + +  +g  +++++++g +++a+ +i ++G +
      CTQ27039.1 267 QKLAGALKAHVNDYNVDVIDSQSATKLTPAatEGGLHQIETASGAVLKARSVIIATGAK 325
                     56778899999999*****99987765544479********************999986 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.017
                     EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalakalkgklevtlve 32 
                     ++ ++GGG +G  aA+ la  +    +vtl+e
      CTQ27039.1 357 RVAVIGGGNSGVEAAIDLAGIV---EHVTLLE 385
                     689****************999...3588887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      697  (0.0388756); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.69u 0.23s 00:00:00.92 Elapsed: 00:00:00.39
# Mc/sec: 4032.50
//
Query:       CTQ27040.1  [L=142]
Description: universal stress protein UP12 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-26   93.1   0.1    2.4e-26   93.0   0.1    1.0  1  Usp             Universal stress protein family
  ------ inclusion threshold ------
      0.089   12.9   0.1       0.34   11.0   0.1    1.9  2  Fe_dep_repr_C   Iron dependent repressor, metal binding and d
      0.094   12.7   0.1       0.14   12.1   0.1    1.5  1  DNA_photolyase  DNA photolyase


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.1   3.9e-30   2.4e-26       1     141 []       1     142 []       1     142 [] 0.96

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 3.9e-30
                 S-SEEEEEE-..SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH.HHHHHHCTTCEEEEEEEESSHHHHHH CS
         Usp   1 mykrIlVavD..gseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada.akaaaeaggvkvevvveegdpaeeil 96 
                 myk+I+ +vD  +   s+kA+++A  la++ ++ ++llhv++ +as + s    + ++ e+ l+ +++ +++ +     +     +++v++g+++++ +
  CTQ27040.1   1 MYKTIIMPVDvfEMALSDKAVRHAEFLAQQ-DGVIHLLHVLPGSASFTMSRFTADLRRFEEHLQHEAETRLQtMVSHFSIDPSRIKLHVRFGSVRDMVN 98 
                 9*********999999**************.689****************99999999999999999988888999999******************** PP

                 HHHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp  97 evaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 e+a e++ad +V+Gsr   ++s  llGS++++v+rha++pV+vVr
  CTQ27040.1  99 ELASEINADVVVIGSRN-PSISTHLLGSNASSVIRHAHIPVMVVR 142
                 *****************.**************************8 PP

>> Fe_dep_repr_C  Iron dependent repressor, metal binding and dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.41   2.4e+03      39      50 ..      11      22 ..       8      27 .. 0.82
   2 ?   11.0   0.1   5.7e-05      0.34      38      64 ..      56      82 ..      45      85 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.41
                   CCGGGS-HHHHH CS
  Fe_dep_repr_C 39 rlEhalseelie 50
                    +E als+++++
     CTQ27040.1 11 VFEMALSDKAVR 22
                   689999999987 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 5.7e-05
                   CCCGGGS-HHHHHHHHHHCT-.SB-TT CS
  Fe_dep_repr_C 38 erlEhalseelierldellgfpeecPh 64
                    r+E +l  e++ rl +++++++ +P 
     CTQ27040.1 56 RRFEEHLQHEAETRLQTMVSHFSIDPS 82
                   699*********************996 PP

>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   2.4e-05      0.14      65      95 ..      82     112 ..      16     138 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.4e-05
                     TT--EEEEESSHHHHHHHHHHHCTECEEEEE CS
  DNA_photolyase  65 lgirLvvrrgdpadvlpelakelgasavvan 95 
                       i+L+vr g+++d + ela+e++a+ vv+ 
      CTQ27040.1  82 SRIKLHVRFGSVRDMVNELASEINADVVVIG 112
                     4599**********************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1111.71
//
Query:       CTQ27041.1  [L=136]
Description: regulator of nucleoside diphosphate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-20   70.7   0.0      2e-19   69.2   0.0    1.6  2  GreA_GreB  Transcription elongation factor, GreA/GreB, C-term
    1.9e-13   50.7   3.1    3.5e-13   49.8   3.1    1.5  1  Rnk_N      Rnk N-terminus


Domain annotation for each model (and alignments):
>> GreA_GreB  Transcription elongation factor, GreA/GreB, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.24   2.2e+03      43      50 ..      27      34 ..      25      37 .. 0.87
   2 !   69.2   0.0   2.3e-23     2e-19       2      75 ..      50     124 ..      49     126 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.24
                TSHHHHHH CS
   GreA_GreB 43 eSPlGkaL 50
                +SP++ aL
  CTQ27041.1 27 NSPVADAL 34
                7*****99 PP

  == domain 2  score: 69.2 bits;  conditional E-value: 2.3e-23
                 ..SS--TT-EEEEE-.SS--EEEE----TTT-BS-SSB--TTSHHHHHHTT--TT-EE---BTTB.---EEEEEE CS
   GreA_GreB   2 pkdvVtfGstVtledldtgeeetytiVgpdeadpskgkiSveSPlGkaLlgkkvGdevevkapsg.kikveIlki 75 
                 p+dvVt++s+V+++dl++gee++ t+V p ++  s+  +Sv++P+G aLlg kvG ++++++p+g + ++e+l+ 
  CTQ27041.1  50 PHDVVTMNSRVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAPVGAALLGLKVGSTIHWELPGGaSTHLEVLEL 124
                 89**********************************************************************986 PP

>> Rnk_N  Rnk N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   3.1   3.9e-17   3.5e-13       1      40 [.       4      43 ..       4      44 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 3.9e-17
                X--EEEHHHHHHHHHHHHCTTTTSSTTHHHHHHHHHCSEE CS
       Rnk_N  1 PpIyitelDleRLeaLldsladrdppaaeaLeaELdRAev 40
                P+I+i+elD+eR+++Ll++ a++++p+a+aL +ELdRA+ 
  CTQ27041.1  4 PAIIINELDAERIDRLLEQPAFANSPVADALNEELDRAQM 43
                99************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1018.25
//
Query:       CTQ27042.1  [L=265]
Description: ribonuclease I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-13   50.0   0.0    5.5e-13   49.6   0.0    1.1  1  Ribonuclease_T2  Ribonuclease T2 family


Domain annotation for each model (and alignments):
>> Ribonuclease_T2  Ribonuclease T2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0     3e-17   5.5e-13       2     174 ..      32     232 ..      31     242 .. 0.70

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 3e-17
                      SEEEEEEE-HHHHSS......SSS....----..-T..S--SS-EEEEEEEE-.........TTS.-.--S--TTS---...........GGGG CS
  Ribonuclease_T2   2 dlllltqqWpgsfCee....ktkk....ecek.vpd..kpaedftihGLwpdn.........sgk.sypenCnssekfd...........ekei 63 
                      d ++l++ W+  fC++    +  +    ec + ++d  ++a+ +t+hGLwp           +++ +    C ++               +   
       CTQ27042.1  32 DRYVLALSWQTGFCQSmydrN--RnepeEC-RlQQDtaNKADFLTVHGLWPGLpksiaargvDERrWMRYGCATRPV-PnmpevkanrkcQ--A 119
                      77899**********977542..2567677.6344455677778******888666666666333355555552222.2455555544432..1 PP

                      ..GGGHHHHHHHS----..SH...HHHHHHHHHTGGGGTT..TS-SHHHHHHHHHHHHTT-...-HHHHHHHTT--S.SS-EEEHHHHHHHHHH CS
  Ribonuclease_T2  64 ..sdllaelnkyWpsli..kk...slwkhEwekHGtCaaslpalksehkYFqkalelrkkl...dlkkvLakagIvPsktksyslseikdalkk 147
                        ++l  e+ ++ +++   ++    l ++E+ kHG+C+       +  +YF + ++l+ ++   ++ ++Lak+       +++s +++ +a+++
       CTQ27042.1 120 aeTGLSLEMANKLNNVMpgSGgtsCLERYEYAKHGVCFGF-----DPDSYFGAMVRLNGEIkrsPVGDFLAKH-----YGQTVSRADFDAAVAR 203
                      3356777777777777644114569*************66.....5689********9887666899999999.....67899999******99 PP

                      HHS...S--.EEEEEE..--EEEEEEEEEEE CS
  Ribonuclease_T2 148 aig...vkp.kieCskdskeqalsevelcld 174
                      a g   vk+ k++C+   +  +l+e ++ l+
       CTQ27042.1 204 AWGpqsVKAfKLTCNG--NPAYLTEMQISLN 232
                      9763224456889*98..5788888888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1979.71
//
Query:       CTQ27045.1  [L=189]
Description: palmitoyl transferase for Lipid A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-67  225.3   3.0    2.1e-67  225.1   3.0    1.0  1  PagP      Antimicrobial peptide resistance and lipid A acylat


Domain annotation for each model (and alignments):
>> PagP  Antimicrobial peptide resistance and lipid A acylation protein PagP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.1   3.0   1.2e-71   2.1e-67       1     145 []      40     186 ..      40     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 225.1 bits;  conditional E-value: 1.2e-71
        PagP   1 rvsqvweeges.dlylplytwHnrltYdkekideynekawGlGlgkslydekgnwhglyalafkDShkklepivGYayekvwkiak.edlrlGlGytvg 97 
                 +v+q+w+e+e+ dly+p++twH+r++Ydkek+d+yne++wG+G+g s++dekgnwhgly++afkDS++k+epi GY++ek+w++ + ++++lGlGyt+g
  CTQ27045.1  40 NVAQTWNEPEHyDLYVPAITWHARFAYDKEKTDKYNERPWGAGFGVSRWDEKGNWHGLYLMAFKDSFNKWEPIGGYGWEKTWRPLTdQNFHLGLGYTLG 138
                 689*****9877***********************************************************************9888************ PP

        PagP  98 vtaRsdykyiPlPlalPlasieykklslqatyipgtknnGnvlflflr 145
                 vtaR++++yiP+P++lPlasi+y  +++q+tyipgt+nnGnv+f+++r
  CTQ27045.1 139 VTARDNWNYIPIPVILPLASIGYGPATFQMTYIPGTYNNGNVYFAWAR 186
                 **********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1499.38
//
Query:       CTQ27046.1  [L=69]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-33  114.8   0.5    1.2e-33  114.7   0.5    1.0  1  CSD       'Cold-shock' DNA-binding domain
    1.3e-05   24.7   0.3    2.9e-05   23.7   0.3    1.6  1  OB_RNB    Ribonuclease B OB domain
  ------ inclusion threshold ------
      0.095   12.7   0.0       0.13   12.2   0.0    1.2  1  CusF_Ec   Copper binding periplasmic protein CusF
       0.11   12.9   0.0       0.12   12.8   0.0    1.1  1  S1        S1 RNA binding domain


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   0.5   2.7e-37   1.2e-33       2      65 ..       5      68 ..       4      69 .] 0.97

  Alignments for each domain:
  == domain 1  score: 114.7 bits;  conditional E-value: 2.7e-37
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEEE CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVtk 65
                +G Vkwfn++kgfGFIt+edg+kdvFvH+saiq++gf++L+egq+VeFe+++g kgp+AanV+ 
  CTQ27046.1  5 KGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQRVEFEITNGAKGPSAANVIA 68
                79************************************************************85 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.3   6.4e-09   2.9e-05       7      29 ..      14      36 ..      11      67 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 6.4e-09
                SSS-EEEEECT.TEEEEE-HHHH CS
      OB_RNB  7 kkGFGFlipdegkeDifippeqm 29
                +kGFGF+ p++g++D+f++ + +
  CTQ27046.1 14 SKGFGFITPEDGSKDVFVHFSAI 36
                79***************875544 PP

>> CusF_Ec  Copper binding periplasmic protein CusF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.9e-05      0.13      36      59 ..      37      60 ..      31      66 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
                TTSEESS-STT-EEEEEEEEETTC CS
     CusF_Ec 36 dpallaglkaGdkVrFefekrdgg 59
                ++  +++l++G++V+Fe+++ ++g
  CTQ27046.1 37 QSNGFKTLAEGQRVEFEITNGAKG 60
                5566799*************9987 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.6e-05      0.12      18      63 ..      17      57 ..       2      64 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.6e-05
                TEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEE CS
          S1 18 gGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkv 63
                +G++   ++  ++fv+ s + ++     + ++l +G++v++++++ 
  CTQ27046.1 17 FGFITPEDGSKDVFVHFSAIQSN-----GFKTLAEGQRVEFEITNG 57
                666666667899*********99.....***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 592.38
//
Query:       CTQ27047.1  [L=127]
Description: conserved hypothetical protein; putative inner membrane protein associated with chromosome condensation [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-24   83.5  10.1    1.3e-23   83.2  10.1    1.1  1  CRCB      CrcB-like protein, Camphor Resistance (CrcB)
  ------ inclusion threshold ------
       0.16   12.0   0.0       0.24   11.5   0.0    1.2  1  DUF5500   Family of unknown function (DUF5500)


Domain annotation for each model (and alignments):
>> CRCB  CrcB-like protein, Camphor Resistance (CrcB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2  10.1   1.4e-27   1.3e-23       2      93 ..       7     116 ..       6     119 .. 0.91

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 1.4e-27
                 HHHHHHHHHHHHHHHH.HHHHBE....BHHHHHHHHHHHHHHHHHHH..............HHTTTHHHHHS-SHHHHHHHHHHHHHT-HHHHHHHHHH CS
        CRCB   2 lvalggalGallRyllssllnkr....plgtlavNvlGsfllgllla..............llttGflGglTTfStfvlelvslleegellaallyvll 82 
                 +v++gg  G++lR++l  +ln+     p+gtl++N+lG+f++g+ la              l+ttGf+GglTTfStf++e+v ll++g++ +all+v++
  CTQ27047.1   7 AVFIGGGTGSVLRWWLGMKLNPVhhaiPIGTLTANLLGAFVIGAGLAwfnrltgidpmwklLITTGFCGGLTTFSTFSAEVVFLLQQGRVSWALLNVAV 105
                 799*************99998889**999**************9777667777777777777************************************* PP

                 HHHHHHHHHHH CS
        CRCB  83 svvlgllavvl 93 
                 ++++++++++l
  CTQ27047.1 106 NLLGSFAMTAL 116
                 ******99876 PP

>> DUF5500  Family of unknown function (DUF5500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.7e-05      0.24      31      56 ..      71      96 ..      64     104 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.7e-05
     DUF5500 31 dgfcgrltsiatnshytmfvldhgsv 56
                 gfcg lt+ +t s   +f+l++g v
  CTQ27047.1 71 TGFCGGLTTFSTFSAEVVFLLQQGRV 96
                69*********************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 986.70
//
Query:       CTQ27048.1  [L=262]
Description: putative enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-36  125.3   0.0    2.9e-36  125.2   0.0    1.0  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.0   1.6e-40   2.9e-36       2     260 ..       3     245 ..       2     246 .. 0.90

  Alignments for each domain:
  == domain 1  score: 125.2 bits;  conditional E-value: 1.6e-40
                   EEEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBS.SSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEECCTTEEEEEEE CS
  CN_hydrolase   2 vAvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgy.keeahfleaAeaglgetlallaalarkngiavvigliereltngklqaynt 97 
                   vA+ Q +  +     n q+++++ ++A ++ga L+vlPE+ +     +++  +++A+ ++g++l+ l a +r+n  + v++l      +g+    nt
    CTQ27048.1   3 VAAGQFAV-TPVWRTNAQTCVAMMQQAEQEGAALLVLPEALLARDdNDPDLSVKSAQPLDGAFLQPLLAESRRNSLTTVLTLHVPS-GEGRA--TNT 95 
                   66666665.23346799*************************933444455578888*******************9999966553.77888..9** PP

                   EEEEETTSEEEEEEE-SS--EECTTSCECCGHHTSCS-SS.S-EEEETTEEEEEEEGGGGGSHHHHHHHHHTT-SEEEEBH.GCCCTCHHHHHHHHH CS
  CN_hydrolase  98 avlldldgklvgkyrKlhLfpgeprpptaverelfepgdg.ipvfdtpvgkiGaaiCyeigfpellralalkgaeilvnlserapvpksmgppqwel 193
                    v+l ++g +++ y+KlhL    ++     e+  + pg++  pv+++++ ++G++ Cy+ +fpel++ lal+ga++lv     a+v +   + +w +
    CTQ27048.1  96 LVVL-REGAVIAHYHKLHL----YDAFAMQESRRVDPGQQiPPVIEVAGLRVGLMTCYDLRFPELALSLALNGAQLLVL--PAAWVKGPQKEHHWAT 185
                   ****.666678*******8....78999************9**************************************..78************** PP

                   HHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEHHHHHHHH CS
  CN_hydrolase 194 lgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaeidladvratr 260
                   l  aral++ c+++aa ++g+        +g S+i+dp G+ lag+g e  +++ a++  +d++++r
    CTQ27048.1 186 LLAARALDTTCYIVAAGECGT------RNIGLSRIVDPLGTTLAGAGSEP-QLIFADLSADDLARVR 245
                   *********************......99*********************.6*******99998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2059.28
//
Query:       CTQ27049.1  [L=68]
Description: TatABCE protein translocation system subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-14   51.4   0.2    5.7e-14   51.2   0.2    1.1  1  MttA_Hcf106  mttA/Hcf106 family


Domain annotation for each model (and alignments):
>> MttA_Hcf106  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.2   3.2e-18   5.7e-14       1      51 [.       4      54 ..       4      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 3.2e-18
                 S-HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH---XXX CS
  MttA_Hcf106  1 lgapelliIlvValllFGpkkLPEvaraLGktLreFkkavkeleeenekea 51
                 +++++ll+++  ++l+FG kkL  ++  LG++++ Fkka+ e+++  +k  
   CTQ27049.1  4 ISITKLLVVAALIILVFGTKKLRTLGGDLGSAIKGFKKAMNEDDDSAKKTT 54
                 79*****************************************99866654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 552.46
//
Query:       CTQ27050.1  [L=321]
Description: lipoate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-14   54.1   0.0      4e-14   53.3   0.0    1.4  1  Radical_SAM  Radical SAM superfamily
    1.5e-07   31.8   0.0    9.9e-07   29.2   0.1    2.0  2  LIAS_N       N-terminal domain of lipoyl synthase of Radical_


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   4.4e-18     4e-14       4     166 ..      91     251 ..      88     252 .. 0.89

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 4.4e-18
                  ESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC....CCTEEEEEEECSSCHG.HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx.xxxxxx RF
  Radical_SAM   4 trgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla....vpgiritvetngtlpd.eekler 96 
                  +  C++rC+fC++ +     gr+   +  e  ++++ + a++g ++v++++ + ++ +d     ++ +  a    +p i+i   ++ ++ + ++ l+ 
   CTQ27050.1  91 GAICTRRCPFCDVAH-----GRPVAPDANEPQKLAQTI-ADMGLRYVVVTSVDRDDLRDGGAQHFADCISAirekNPSIKIETLVPDFRGRmDRALDI 182
                  678***********7.....99999*************.8**************************99999886666666666666666668888888 PP

                  HHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET..EEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  97 llelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikr..vvdrivglpGendeeleellel 166
                  l   ++d+++++le +    +++   +g ++   l++le+++ea  ++  ++++++++ Ge+ +e+ e++++
   CTQ27050.1 183 LTVTPPDVFNHNLENVPRL-YRQVR-PGADYNWSLKLLERFKEA-HPEipTKSGLMVGLGETNDEIIEVMRD 251
                  88888*************8.88888.******************.67778******************9987 PP

>> LIAS_N  N-terminal domain of lipoyl synthase of Radical_SAM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   1.1e-10   9.9e-07      61     108 .]      25      73 ..      11      73 .. 0.87
   2 ?   -0.0   0.0      0.13   1.2e+03      29      77 ..     218     266 ..     202     275 .. 0.73

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.1e-10
      LIAS_N  61 gnlkrekgerlrLPswlktkiPlGkn.ynkikndlreLnLhtvCeeaRC 108
                 +n+  e++  lr P+w+k k+P   +  + ik+ +r+  Lh vCeea C
  CTQ27050.1  25 KNVATEREALLRKPEWMKIKLPADSSrIQGIKAAMRKNGLHSVCEEASC 73 
                 4677777889************98762788*****************99 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.13
      LIAS_N  29 tdekkelleeGPdlqDFvsgdkedkseweeykgnlkrekgerlrLPswl 77 
                 ++++ke   e P+ +  + g  e+++e  e+  +l+r+    l L ++l
  CTQ27050.1 218 LERFKEAHPEIPTKSGLMVGLGETNDEIIEVMRDLRRHGVTMLTLGQYL 266
                 5666677777777777777777777777777777777766677777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2224.95
//
Query:       CTQ27051.1  [L=319]
Description: putative DNA-binding transcriptional regulator, LysR-type [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-15   57.3   0.9    1.8e-15   56.9   0.9    1.2  1  LysR_substrate  LysR substrate binding domain
    2.7e-15   56.0   0.0    6.5e-15   54.8   0.0    1.7  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0037   17.2   0.0      0.011   15.8   0.0    1.7  2  HTH_Mga         M protein trans-acting positive regulator (MG
  ------ inclusion threshold ------
      0.026   14.6   0.0      0.051   13.6   0.0    1.5  1  Cro             Cro
        0.1   12.5   0.0       0.27   11.1   0.0    1.7  1  HTH_5           Bacterial regulatory protein, arsR family
       0.12   12.6   0.0       0.24   11.6   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.9   6.1e-19   1.8e-15       4     208 ..     115     317 ..     112     318 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 6.1e-19
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsl 98 
                     +++ ++i+++p++++ l+p l ++++  +P++ l+  +    + +++l+++++Dl i +   + + +  ++L+++++ ++++++hp  +g p + 
      CTQ27051.1 115 QQRVITIATTPAMGALLMPGLASALKPTFPQILLHNIAIV--DAARQLDQRQVDLLIDTHLHSGQAISHHVLYQDRVQMYCRAGHPALDG-PQDE 206
                     67899***********************************..*******************************************97776.8899 PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTCC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgre 192
                       La++++ ll ++     +l + l+e+  ++r ++++ +l + +a++a  ++++l  + + +   +   l++l++p +  +  +++l ++k + 
      CTQ27051.1 207 TTLAEYEFALLLPEGQRYPTLHRRLQEEMGERRCGFSTFNLMTQAAMIAGSDMLGLTTERLFAMVSRLWPLQTLDFPSLGGEqIDVALHFNKLSG 301
                     99*********99999999999999*************************************9999*************9999*********999 PP

                     CHHHHHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidflreal 208
                       p+++  i+ + +++
      CTQ27051.1 302 KEPLLKEIIETVIRSF 317
                     9999999999987765 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   2.2e-18   6.5e-15       1      59 [.      31      89 ..      31      90 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 2.2e-18
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l++l +f+av  ++ +  AA+ L+++++a+s++i++L++++ +pLf+R+g+g+++T+++
  CTQ27051.1 31 LNLLTIFEAVYVHKGIVNAAKILNITPSAISQSINKLRALFPDPLFIRKGQGVTPTAYA 89
                689*****************************************************986 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.5e-06     0.011      23      54 ..      46      77 ..      30      81 .. 0.88
   2 ?   -3.3   0.0       3.3   9.9e+03      43      56 ..     138     151 ..     137     151 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.5e-06
     HTH_Mga 23 ldelakeLglseltlqsdiseLnelFpeelsi 54
                ++ +ak L+++ +++ + i++L++lFp+ l+i
  CTQ27051.1 46 IVNAAKILNITPSAISQSINKLRALFPDPLFI 77
                5679************************9998 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.3
     HTH_Mga  43 eLnelFpeelsivi 56 
                  L+ +Fp  l+++i
  CTQ27051.1 138 ALKPTFPQILLHNI 151
                 68889999999986 PP

>> Cro  Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.7e-05     0.051      13      40 ..      44      71 ..      36      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.7e-05
                HHHHHHHHHHTS-HHHHHHHHHCT-EEE CS
         Cro 13 vGQaktAkdlgvkqsaIsKAlkakRnIy 40
                 G + +Ak l++++saIs  +++ R ++
  CTQ27051.1 44 KGIVNAAKILNITPSAISQSINKLRALF 71
                48899*****************999876 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.2e-05      0.27      22      41 ..      50      69 ..      50      70 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.2e-05
                HHHHTS-HHHHHHHHHHHHH CS
       HTH_5 22 aeelglsqstvShHLkkLre 41
                a++l++++s++S+  +kLr 
  CTQ27051.1 50 AKILNITPSAISQSINKLRA 69
                689***************96 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     8e-05      0.24      29      47 ..      50      68 ..      33      69 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8e-05
                    HHHHTS-HHHHHHHHHHHH CS
  Fe_dep_repress 29 aerLnvspssVsemlkkLe 47
                    a++Ln+ ps +s++++kL+
      CTQ27051.1 50 AKILNITPSAISQSINKLR 68
                    899**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2232.69
//
Query:       CTQ27052.1  [L=214]
Description: lipoyl-protein ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-07   29.5   0.0    8.9e-07   28.9   0.0    1.3  1  BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family


Domain annotation for each model (and alignments):
>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   4.9e-11   8.9e-07      25     131 .]      63     159 ..      57     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 4.9e-11
                    -EEEEEEESS-B-B--B-TTSEEEEEEEEESS...-CCGTHHHHHHHHHHHHHHH.......HHTT-TTEEEETTTEEEETTEEEEEEEEEEEETT CS
  BPL_LplA_LipB  25 glvvvrrqtgGrnvwhspkgeltyslllspeqktfqnrvlelyvsllvlavlealg.yrdskpgiegipvfikwpnDlyvngrKlaGiavtstrgk 119
                     + v++  +gG++++h+p++ ++y ll++++     +  ++ +v+ll++ v+++l+ y  s+   + + +       +yv+ rK+ + + + ++g 
     CTQ27052.1  63 DIPVIQSDRGGQVTYHGPGQQVMYVLLDLKRR----KLGVRELVTLLEQTVVNTLAeY--SIESHPRADAP-----GVYVGERKICSLGLRIRKGC 147
                    5679999**********************775....56678889***********532..45555566666.....78999****99999999999 PP

                    S-EEEEEEEEEE CS
  BPL_LplA_LipB 120 tlhhivigvgvn 131
                      h++++++ ++
     CTQ27052.1 148 SFHGLALNIAMD 159
                    999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       174  (0.00970495); expected 358.6 (0.02)
Passed bias filter:                      164  (0.00914719); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1676.91
//
Query:       CTQ27053.1  [L=87]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-28   99.3   0.0    1.5e-28   99.2   0.0    1.0  1  DUF493    Protein of unknown function (DUF493)
  ------ inclusion threshold ------
      0.034   14.3   0.1       0.04   14.1   0.1    1.2  1  HisG_C    HisG, C-terminal domain


Domain annotation for each model (and alignments):
>> DUF493  Protein of unknown function (DUF493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   1.7e-32   1.5e-28       2      84 .]       7      87 .]       6      87 .] 0.98

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 1.7e-32
      DUF493  2 elieFPcdfpikviGkaeedfaqavvevverhap.dfdeetvevresskgkYlSvtvtvrveseeqldalyqeLkahprvkmvL 84
                el+eFP+ f++kv+G+a ++++++vvevv+rhap d++++    ++sskg+Y+Sv++t+ +++ eq+++ly+eL++++ v+mvL
  CTQ27053.1  7 ELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPgDYSPSV---KPSSKGNYHSVSITINATHIEQVETLYEELGNIDIVRMVL 87
                79***********************************9999...***************************************8 PP

>> HisG_C  HisG, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   4.4e-06      0.04      16      67 ..      28      83 ..      16      87 .] 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.4e-06
                HHHHHHH....---SSS-EEEE-.SS-EEEEEEEEECCCHHHHHHHHHCTT-EEEE CS
      HisG_C 16 leevlki....lPGlrsPTvspladegwvaVsavveekevaevideLkaaGAsdIl 67
                +++v+++     PG  sP v p ++ ++ +Vs+ ++ + + +v    +++G  dI+
  CTQ27053.1 28 VDQVVEVvqrhAPGDYSPSVKPSSKGNYHSVSITINATHIEQVETLYEELGNIDIV 83
                44555555557**************************9998886666777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 684.92
//
Query:       CTQ27054.1  [L=423]
Description: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.4e-102  340.3   0.1   7.3e-102  339.9   0.1    1.2  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase
    1.6e-24   86.0   0.0    2.7e-24   85.2   0.0    1.4  1  PBP5_C           Penicillin-binding protein 5, C-terminal dom
    2.6e-06   27.2   0.0    4.1e-06   26.5   0.0    1.3  1  Beta-lactamase2  Beta-lactamase enzyme family
  ------ inclusion threshold ------
      0.021   14.1   0.0       0.17   11.1   0.0    2.0  2  Beta-lactamase   Beta-lactamase


Domain annotation for each model (and alignments):
>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.9   0.1  1.6e-105  7.3e-102       4     240 ..      58     292 ..      55     293 .. 0.98

  Alignments for each domain:
  == domain 1  score: 339.9 bits;  conditional E-value: 1.6e-105
                    SS---.--SSSEEEEEETTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCS..GTTSSTTS-TTT-EEEHHHHH CS
  Peptidase_S11   4 aasepleiaaksailvdantGkvLyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgn..nkevsniflkkgskvsvkdLl 97 
                     + +p +i+a+s+il+d+n+GkvL+e+nad ++++ASltK+mT+y++++a+k+gk+ke+d vt+++da+a+gn  +k++s +flk+g++v v++L+
     CTQ27054.1  58 IPGAP-QIDAESWILIDYNSGKVLAENNADSRRDPASLTKMMTSYVIGQAMKAGKFKESDLVTVGNDAWATGNpvFKGSSLMFLKPGMQVPVSQLI 152
                    66788.9***************************************************************************************** PP

                    HHHHCC--HHHHHHHHHHHHSSHHHHHHHHHHHHHHTT-TT-B-SSSSSTSHTTCBB-HHHHHHHHHHHHHHHHHHHHGGGESEEEETTECTEEEE CS
  Peptidase_S11  98 egllvssgNdAavalAekiaGsekaFvkmMnkkakelGlkntkfvnptGLdnenqvssArdlailakallkdlpeelkitkeksltfngikklnyk 193
                    +g+ ++sgNdA+va+A+++aGs++aFv +Mn+++++lGlknt+f++++GLd+++q+ssArd+a++++al++d+p+e++i++ek++tfn    +++ 
     CTQ27054.1 153 RGINLQSGNDACVAMADYVAGSQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYREKEFTFN---GIRQL 245
                    ***************************************************************************************9...9**** PP

                    SSTGGGGTTTSEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEES CS
  Peptidase_S11 194 nknkllyrktlnvdglktGytkkAgeclvatavenqmrlisVvlnak 240
                    n+n+ll++++lnvdg+ktG+t+kAg++lva+a+e+qmrlis v++ +
     CTQ27054.1 246 NRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGR 292
                    ********************************************976 PP

>> PBP5_C  Penicillin-binding protein 5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   6.1e-28   2.7e-24       1      91 []     312     403 ..     312     403 .. 0.99

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 6.1e-28
                 EEEEEEEXTTCESEEEEEESSSSSEEEEEESSXEEEEEETTHCCTEEEEEEE.SSSEESGBGTTSEEEEEEEEETTEEEEEEEEEESSXBXB CS
      PBP5_C   1 FetkklykkgkvvktvsvlkgkekeVplvakediyvtvkkgekkklkakvel.kksleapikkGqkvGklkvyldgkliakvplvakedvek 91 
                 Fet++++k+gk++ + + + g+ +  +l++++d+y+t+++g +k+lka+++l + +l ap++k+q+vG+++++ldgk+i + plv+++++++
  CTQ27054.1 312 FETVNPIKAGKEFASEPAWFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLnNTELHAPLQKNQVVGTINFQLDGKTIDQRPLVVLQEIPE 403
                 9****************************************************************************************986 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   9.1e-10   4.1e-06       3     147 ..      76     228 ..      74     257 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 9.1e-10
                      TTSEE.EESTTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHH......HTSSSTSGGGSTTS.EEEHHHHHHHHHHTT-HHHHHHHH CS
  Beta-lactamase2   3 tgeel.gvnadeefpaaStiKvpillalleavlegklslderltltaed......ivggsgilqklpgk.tlslrdlltlmiavSDNtAtnlLi 88 
                      +g++l + nad +   aS+ K +  +   +a ++gk++  + +t+  ++      + +gs  + +l+++ ++++++l++    +S N A  +  
       CTQ27054.1  76 SGKVLaENNADSRRDPASLTKMMTSYVIGQAMKAGKFKESDLVTVGNDAwatgnpVFKGSSLM-FLKPGmQVPVSQLIRGINLQSGNDACVAMA 168
                      56666466999************9999999999**************9955555333444433.566555************************ PP

                      HHH.T.HHH....HHHHHHHCTHTTSB--SHTTCCHHHTTSSTTEE-HHHHHHHHHHHHHTTSSH CS
  Beta-lactamase2  89 drl.g.lea....vnawlkelglretrlrrklpdleaadkdkrntttardlarllealargells 147
                      d++ g ++a    +n++  +lgl++t++++ +++l+a       +++ard+a + +al+r+ + +
       CTQ27054.1 169 DYVaGsQDAfvslMNNYVNALGLKNTHFQT-VHGLDA----DGQYSSARDMALIGQALIRDVPNE 228
                      ***85566644446999999*******995.566655....789**************9986555 PP

>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.8e-05      0.17      19      79 ..      71     118 ..      54     153 .. 0.82
   2 ?    0.3   0.0     0.074   3.3e+02     216     232 ..     196     218 ..     154     236 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.8e-05
                     EEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBG CS
  Beta-lactamase  19 vavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpV 79 
                     +++++ gkv+             +  +ad++ + aS+tK++t+ ++ q + +Gk+   d V
      CTQ27054.1  71 LIDYNSGKVL-------------AENNADSRRDPASLTKMMTSYVIGQAMKAGKFKESDLV 118
                     6778888888.............28899**************************9888877 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.074
                     C......TTTBEEEEHHHHHHHH CS
  Beta-lactamase 216 e......gagglistardlarfl 232
                             a g +s+ard+a  +
      CTQ27054.1 196 FqtvhglDADGQYSSARDMALIG 218
                     04444455678899999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3012.65
//
Query:       CTQ27055.1  [L=382]
Description: minor lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-19   69.9   0.0      5e-19   68.4   0.0    1.8  1  DPBB_1    Lytic transglycolase
    1.8e-14   53.8   3.7    5.1e-14   52.4   3.7    1.8  1  SPOR      Sporulation related domain


Domain annotation for each model (and alignments):
>> DPBB_1  Lytic transglycolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   5.5e-23     5e-19       1      81 [.      78     166 ..      78     167 .. 0.91

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 5.5e-23
                 XEEEEEEE-CCC.....-TTSSB--TTS-EEE-SSS-TT-EEEE..TT.--EEEEEEEE----STTECEEE-HHHHHHHT-TTTS-EEE CS
      DPBB_1   1 taagsaslykdg.....tacGecyevkcltaahktlplgtycrv..ls.gksvtVtitDrgpfppgrhiDLSkaAfeklakpraGvipV 81 
                 t+ag a++y+ +     ta+Ge +++++ltaah+tlp+++y+r   l+ g+ ++V+i+Drgp+ ++r+i LS+a + +l+ +++ ++++
  CTQ27055.1  78 TQAGFAAIYDAEpnsnlTASGEAFDPTQLTAAHPTLPIPSYARItnLAnGRMIVVRINDRGPYGNDRVISLSRASADRLNTSNNTKVRI 166
                 57999****54455678***************************98778********************************99988876 PP

>> SPOR  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   3.7   5.7e-18   5.1e-14       1      75 [.     307     379 ..     307     380 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 5.7e-18
                 -TTBB--BS-EES-HHHHHHHHHHCCHHT--...EEECCSSSCEEEEESSBCTCCHHHHHHHHCHHHHTTS--B- CS
        SPOR   1 asggytvQvgafsseanAerlaakLrakgfaaavavvsgggglyrVrvGpfasreeAqaalkkLkaaagisafvv 75 
                 asg++ vQvga s++ +A++++++L+++   +   +v ++g ++r+++Gpfa++++A a++++L++ a++++f+ 
  CTQ27055.1 307 ASGNFVVQVGAVSDQTRAQQYQQRLSQQFSVP--GRVMQNGAVWRIQLGPFADKAQASAVQQRLQSEAQLQSFIT 379
                 689*************************7766..999999999**********************5589999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2917.29
//
Query:       CTQ27056.1  [L=370]
Description: cell wall shape-determining protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.9e-125  416.8  29.9   8.4e-125  416.5  29.9    1.0  1  FTSW_RODA_SPOVE  Cell cycle protein


Domain annotation for each model (and alignments):
>> FTSW_RODA_SPOVE  Cell cycle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.5  29.9  4.7e-129  8.4e-125       3     358 ..      20     364 ..      18     365 .. 0.97

  Alignments for each domain:
  == domain 1  score: 416.5 bits;  conditional E-value: 4.7e-129
  FTSW_RODA_SPOVE   3 llllvllllvilGlvmiysaslveslvlfgdsfvlfirqlvylllglivfvlllriplkfleklakllliislllLvlvkvplgssanGAkrWi 96 
                      +ll++l+ll+ ++ ++i+sas  +++ +++       r++ ++++g+++++++++ip++++e +a++l+i++++lLv+v+  +g+ ++GA+rW+
       CTQ27056.1  20 MLLILLALLT-YSALVIWSASG-QDVGMME-------RKIGQIAMGVVIMIVMAQIPPRVYEGWAPYLYIFCIILLVAVDA-FGAISKGAQRWL 103
                      4556666666.99999999999.7777777.......********************************************.************ PP

  FTSW_RODA_SPOVE  97 rlggisiqPsEfvkialilflAavlskkkkevksrlrellillvivllilvlillqpdlgtavllliillvvlflsglslklilaivlalilvi 190
                      +lg++++qPsE++kia+ l++A+++++  +++ ++l+++ i+lv+++l+++l+++qpdlgt++l+++++l+vlflsgls++li ++v++++++i
       CTQ27056.1 104 DLGIVRFQPSEIAKIAVPLMVARFINR--DVCPPSLKNTGIALVLIFLPTLLVAAQPDLGTSILIALSGLFVLFLSGLSWRLIGIAVVLVAAFI 195
                      ***************************..***************************************************************** PP

  FTSW_RODA_SPOVE 191 aivllilledyqvkrvtslldpfkdplgsgYqviqsliAigsGGllGkGlgnsqq.kleyLPeahtDfIfavigEelGlvGvllllllfflliv 283
                      +i++++l++dyq++rv++lldp++dplg+gY++iqs+iAigsGGl GkG+ +++q +le+LPe+htDfIfav++EelGl+Gvl+ll+l++lli+
       CTQ27056.1 196 PILWFFLMHDYQRQRVMMLLDPETDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQsQLEFLPERHTDFIFAVLAEELGLIGVLILLALYILLIM 289
                      ********************************************************************************************** PP

  FTSW_RODA_SPOVE 284 rglriarkakdrfgsllavgivllivvqsfinigmvlGllPvtGltlPflSyGGsSllalliligillnisreek 358
                      rgl+ia++a+++fg+++a g++l+++v++f+nigmv+G+lPv+G++lP++SyGGs+l++l++++gi+++i++++k
       CTQ27056.1 290 RGLWIAAQAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRK 364
                      ***********************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2624.89
//
Query:       CTQ27057.1  [L=633]
Description: transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-92  308.2   0.1    7.7e-92  307.7   0.1    1.2  1  Transpeptidase  Penicillin binding protein transpeptidase dom
    1.5e-45  155.8   0.5    2.3e-45  155.1   0.5    1.3  1  PBP_dimer       Penicillin-binding Protein dimerisation domai


Domain annotation for each model (and alignments):
>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.7   0.1   8.6e-96   7.7e-92       2     306 .]     272     609 ..     271     609 .. 0.98

  Alignments for each domain:
  == domain 1  score: 307.7 bits;  conditional E-value: 8.6e-96
                     EEEEEETTT-BEEEEEEESE-TTTHHCC.............TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS... CS
  Transpeptidase   2 aavvldaktgevlamaskpsydpnakvg.............kneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqs.. 81 
                     a+vv+d++tg++la++s+psydpn +v+             +n+pl nra+q++y+P+St+K+++a+ al agvi+++++l+d+g+++ +g++  
      CTQ27057.1 272 AVVVTDPRTGAILALVSTPSYDPNLFVDgisskdysallndPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTSLFDPGWWQLPGSEkr 366
                     89****************************************************************************************99999 PP

                     ECTCCCC-SSSSEEEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--.B--SSH.........HHHHHHHHTTT...SB CS
  Transpeptidase  82 ikdweqdnkgsegitlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaG.vptrkw.........legatisfgiG...lt 163
                     ++dw+++   ++ +++++ale+S +tyf+++a+++g d+l+++++kfg+G+ tgidl++e++G +ptr+w         ++g+ti +giG   +t
      CTQ27057.1 367 YRDWKKWG--HGHLNVTKALEESADTYFYQVAYDMGIDRLSEWMSKFGYGHYTGIDLSEERSGnMPTREWklkrfkkpwYQGDTIPVGIGqgyWT 459
                     *******5..8899********************************************************************************* PP

                     B-HHHHHHHHHHHHTTTEEE--BSEEEEEECTT.EEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCG..TCTTS--EEEEEEEEECSSS CS
  Transpeptidase 164 vtplqlaqayaaiangGklvkPhlvkaivdpdg.vrkvkpkelnklpisketaekvkeglkgvvsrgsgtata..avegykvagKTGTAevagkk 255
                     +tp+q+ +a+  ++n+G++  Phl++++v++++ v++v+p+e+   +i++ ++e  k+g++gv++rg+gta++  a++ yk+a+K+GTA+v+g k
      CTQ27057.1 460 ATPIQMNKALMILINDGVVKVPHLLQSTVEDGKpVPWVQPHEPPVGDIHSGYWEIAKDGMYGVANRGNGTAHKyfASAPYKIAAKSGTAQVFGLK 554
                     ******************************999************************************************************** PP

                     TTSEEEEEE.......EEEEEEEESTTS-SEEEEEEECTCSSSSSCCHHHHHHHHHHH CS
  Transpeptidase 256 gngkkegak.......iswfvgyapadnpkyavavlieqpkeaaggkaaapiakkile 306
                      n++++++        ++ ++++ap++np++ava+++e+++    g a + i+++il+
      CTQ27057.1 555 ANETYNAHRiserlrdHKLMTAFAPYNNPQVAVAMILENGG---AGPAVGTIMRQILD 609
                     *****9988********************************...9**********986 PP

>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.1   0.5   2.6e-49   2.3e-45       2     179 ..      64     239 ..      63     240 .. 0.97

  Alignments for each domain:
  == domain 1  score: 155.1 bits;  conditional E-value: 2.6e-49
                 .EE----EE-TTS-EEEEEEEEEEEEEEESSS-HHHHHHHHHHHHHHCHHHTTS-HHHHHHHHCCCCTSSTTSCECCCCCEECHHHCCCHHHHHCSTT- CS
   PBP_dimer   2 ipapRGeIyDrngrlLAtnrpsytltitpsklkkkkalekikklaklleseenldderleelalkknsykaykpvviaediseeevarikenakdlpGi 100
                 ip++RG IyDrng++LA nr+ y+l+++p+k+++ +++  ++ l  +++    l+d+++   +++ ++ +++++++++ ++se +var++ n++++pG+
  CTQ27057.1  64 IPPSRGIIYDRNGTPLALNRTIYQLEMMPEKVDNVQQT--LDALRDVVD----LTDDDIAGFKKERARSHRFTSIPVKVNLSEVQVARFAVNQYRFPGV 156
                 89*******************************99987..899999997....999999998889********************************** PP

                 EEEEEEEEEETTTSTTHHHH-EEEEC-HHHHHCCCCH....TCCTTCEEEESHHHHHTHHHHHECCCEEEEEEECTSSCCEEE CS
   PBP_dimer 101 nievepkRyYpkgelaahvlGyvgkiteeelekykek....gyssgdliGksGlEkqyEeeLrGkkGkrqvkvdarGrileel 179
                 +++   +RyYp+++ ++hv+Gyv+ki+++++++  ++    +y s+  iGk G+E++yE+ L+G+ G+++v+v++rGr++++l
  CTQ27057.1 157 EVKGYKRRYYPYNSALTHVIGYVSKINDKDVDRLDKEgklaNYASTHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQL 239
                 ***********************************99*******************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4756.80
//
Query:       CTQ27058.1  [L=155]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.6e-47  158.8   0.0    1.1e-46  158.7   0.0    1.0  1  SPOUT_MTase  Predicted SPOUT methyltransferase


Domain annotation for each model (and alignments):
>> SPOUT_MTase  Predicted SPOUT methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7   0.0   5.9e-51   1.1e-46       1     154 []       1     153 [.       1     153 [. 0.96

  Alignments for each domain:
  == domain 1  score: 158.7 bits;  conditional E-value: 5.9e-51
                  XEEEEEEES---H.HHHHHHHHHHHHHTTT-EEEEEEE....--..-S-HHHHHHHHHHT--....TT-EEEEE-TTSEE--HHHHHHHHHHHHHHT- CS
  SPOUT_MTase   1 mkikiiavgklkekylkelieeYlkrlkkyakleiielkkekks..ekeeekakekegerilkklkkkayvillderGkelsSeelakkleklaeegk 96 
                  mk++++avg++++++++++++eYl+r++k +++e++e++   k+  ++++++++ekege +l+  + k+++++ld+ Gk +++ +la++le+++++g+
   CTQ27058.1   1 MKLQLVAVGTKMPDWVQTGFSEYLRRFPKDMPFELVEIP-AGKRgkNADIKRILEKEGEMMLA-AAGKNRIVTLDIPGKPWDTPQLARELERWKQDGR 96 
                  9*************************************5.44444599**************7.6778999*************************99 PP

                  .-EEEEE--TT---GGGGGG-SEEEE--SS---HHHHHHHHHHHHHHHHHHHT--XXX CS
  SPOUT_MTase  97 selvfvIGGsdGlseevkkradeklslsklTfpHqlvrvvllEQiYRaftIlkgepYH 154
                   ++ +++GG++Gls+++k++a++++sls lT+pH lvrv+++E +YRa++I +++pYH
   CTQ27058.1  97 -DVSLLVGGPEGLSPACKAAAEQSWSLSTLTLPHPLVRVLVAESLYRAWSITTNHPYH 153
                  .********************************************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1376.88
//
Query:       CTQ27059.1  [L=105]
Description: hypothetical protein CH1034_160047 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-29  102.0   0.2    2.2e-29  101.8   0.2    1.0  1  RsfS      Ribosomal silencing factor during starvation


Domain annotation for each model (and alignments):
>> RsfS  Ribosomal silencing factor during starvation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.2   1.2e-33   2.2e-29       3      99 .]      10     104 ..       8     104 .. 0.94

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 1.2e-33
                 HHHHHHHTT-EEEEEEE-TTTTBSS-SEEEEEEESSHHHHHHHHHHHHHHHHHC.C-.--EEECBTTS.SEEEEE-SSEEEEEEECCCHHHHHHHHHC CS
        RsfS   3 iaealedkkaedivvidlrekkssladymviatakserhlkalaeelekklkeeaae.alsveGlnegddWvlvdlgdvvVhllteeaReeydLEelW 99 
                 +++ ++d k++div+id++  kss++d+m+i+t++s+rh+ ++a++++++ + + +  +l veG+  ++dW++vdlgdv+Vh+++ee+R+ y+LE+lW
  CTQ27059.1  10 VIDKIDDLKGQDIVAIDVHG-KSSITDCMIICTGTSTRHVMSIADHVVQESRAA-GMlPLGVEGE-AAADWIVVDLGDVMVHVMQEESRRLYELEKLW 104
                 5678999*************.7****************************9966.44799*****.788***************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 948.33
//
Query:       CTQ27060.1  [L=209]
Description: putative phosphatase with phosphoglycerate mutase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-52  177.7   0.3    2.3e-52  177.5   0.3    1.0  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.5   0.3   1.3e-56   2.3e-52       1     193 [.       3     195 ..       3     196 .. 0.98

  Alignments for each domain:
  == domain 1  score: 177.5 bits;  conditional E-value: 1.3e-56
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..H CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidaiysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeype 99 
                 l+LvRHGete+n++g ++g+  +pLt++G++qA+ l+erl+  p+d++++S l R+  Ta l+++ + +p e +++L+E+ fGdwe ++++++++e +e
  CTQ27060.1   3 LWLVRHGETEANVAGLYSGHAPTPLTPRGVAQARTLGERLRLAPFDKVFCSELARTGTTADLLLGDRAIPRERHPALNEMFFGDWEMRHHRDLQREDAE 101
                 79************************************************************************************************* PP

                 SHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS-EEEEEEEE CS
  His_Phos_1 100 eleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpleelrrleldnaslsvlefdeggwrlvrlnd 193
                  ++aw +d+++++p +gEs++ +a+Rv++++  l++  + +++l+V H+gv+ +l+a ll++p+++++++++++ ++s le++++  +l+ ln 
  CTQ27060.1 102 NYAAWCADWQHAAPTNGESFQNFARRVSEFIPTLTDCRHLDHLLIVGHQGVLSLLTALLLQMPPAAMWHFPIAHGAWSLLEIRDDFTTLRVLNS 195
                 ************************************999999*******************************************999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1566.52
//
Query:       CTQ27061.1  [L=216]
Description: nicotinic acid mononucleotide adenylyltransferase, NAD(P)-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-37  129.2   0.0    1.5e-37  129.0   0.0    1.0  1  CTP_transf_like  Cytidylyltransferase-like
  ------ inclusion threshold ------
        6.1    7.5   7.3         69    4.2   3.6    3.0  2  HTH_32           Homeodomain-like domain


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.0   1.6e-41   1.5e-37       1     143 []      10     190 ..      10     190 .. 0.99

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 1.6e-41
                      EEEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHH...........HHHHHTTTT CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkkkplasaeeRlemlelakevdevisvdpweltr...........evlkklkpd 83 
                      ++gGtFDp+H+GHl+ +e +++++++++++++p+++pp++  +p a++++R++ml+la+ ++++++ d++el r           e++++++p 
       CTQ27061.1  10 IYGGTFDPVHYGHLKPVEILANQIGLSKVIIMPNNVPPHRP-QPEATSAQRVHMLKLAIADKPLFTLDERELRRdtpswtaqtlqEWRQEQGPR 102
                      69**************************************9.***************************************************9 PP

                      .EEEEEEEHHHHHHHHCHHHHHHHHHHHHHEEEEEE...........................HTTCEEEEEEECCTTTCSHHHHHHH CS
  CTP_transf_like  84 .klylvigadvledfsewkeleeilgnvklvvvsrp...........................ekqanvllkaekrtngiSstkirer 143
                        l+++ig+d+l +f++w+++e+il+nv+l+v++rp                           +++ +v+++ae ++ +iS+t+ir+r
       CTQ27061.1 103 kPLAFIIGQDSLLTFPTWHNYETILDNVHLIVCRRPgypltmaqeadqrwldrhlthdveslhNRPSGVIYLAETPWFDISATIIRQR 190
                      9*************************************************************************************97 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   3.6    0.0077        69      28      60 ..      53     100 ..      43     106 .. 0.65
   2 ?    3.5   0.1     0.013   1.1e+02       3      22 ..     150     169 ..     150     200 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0077
      HTH_32  28 klsdevrariiallre.ep..............rWsprqlaarlaere 60 
                   + ++r + ++l+   +p               W+++ l+++ +e++
  CTQ27061.1  53 EATSAQRVHMLKLAIAdKPlftlderelrrdtpSWTAQTLQEWRQEQG 100
                 466666666666665424566666666666666*********985544 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.013
      HTH_32   3 srwlkRyneeGlegLkdrpr 22 
                 +rwl R+ ++ +e L+ rp+
  CTQ27061.1 150 QRWLDRHLTHDVESLHNRPS 169
                 69********9999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1646.49
//
Query:       CTQ27062.1  [L=344]
Description: DNA polymerase III, delta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-74  246.3   7.4    1.5e-73  245.0   7.4    1.7  1  DNA_pol3_delt_C  Processivity clamp loader gamma complex DNA 
    1.7e-45  154.9   0.1    3.2e-45  154.0   0.1    1.4  1  DNA_pol3_delta   DNA polymerase III, delta subunit
  ------ inclusion threshold ------
      0.071   13.3   0.0       0.18   12.0   0.0    1.6  1  BET              Bromodomain extra-terminal - transcription r
       0.29   11.4   2.7        5.4    7.4   0.0    3.4  3  HTH_18           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DNA_pol3_delt_C  Processivity clamp loader gamma complex DNA pol III C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.0   7.4   3.4e-77   1.5e-73       1     125 []     215     339 ..     215     339 .. 1.00

  Alignments for each domain:
  == domain 1  score: 245.0 bits;  conditional E-value: 3.4e-77
                      HHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHTT-CCHHHHHHHHHHHS-HHHHHHHHHHHHH CS
  DNA_pol3_delt_C   1 pfhwvdallagkskralhilqqlrlegsepvillrtlqrellllvqlkrqaahtplralldkhrvwqnrrqllsealqrlsltqlrqavtlltr 94 
                      p+hwvdallagkskr+lh+lqqlrleg+ep+illrtlqrellllv+lkrqa+htplr+l+dkhrvwqnrrqlls+al+rls++qlrqavtlltr
       CTQ27062.1 215 PYHWVDALLAGKSKRVLHVLQQLRLEGCEPAILLRTLQRELLLLVTLKRQATHTPLRSLFDKHRVWQNRRQLLSDALTRLSGEQLRQAVTLLTR 308
                      9********************************************************************************************* PP

                      HHHHHHTSTTSTHHHHHHHHHHHTTS-XXXX CS
  DNA_pol3_delt_C  95 leltlkqdygqdvwaeleslslllchkalad 125
                      +elt+kqdyg+dvw+eleslslllchkalad
       CTQ27062.1 309 AELTFKQDYGHDVWPELESLSLLLCHKALAD 339
                      *****************************98 PP

>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.0   0.1   7.1e-49   3.2e-45       1     174 []      22     191 ..      22     191 .. 0.99

  Alignments for each domain:
  == domain 1  score: 154.0 bits;  conditional E-value: 7.1e-49
                     EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-HHH.HTTTSTTTTSSSSEEEEEEE--.....TT-S-TTHHHHHHHHTTT--SSEE CS
  DNA_pol3_delta   1 YllyGedellleeskdqilkqalkqgfedlnyikfdlnedwiddvleecetlpffsdkrivvlknpklltkesklnekllkeLeeylsnlpedtl 95 
                     Yll+G+d+lll+es+d+i+++a +qgf++++++++d ++dw + ++   +++++f+++++++l +p     e+++n+  +++L +++  l++d l
      CTQ27062.1  22 YLLLGNDPLLLQESQDAIREAAAAQGFTEHHTFSIDNSTDWQA-IFALSQAMSLFASRQTLLLILP-----ENGPNAAINEQLATLVGLLHDDLL 110
                     9******************************************.**********************.....************************ PP

                     EEEEES.S--HHHH...HHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
  DNA_pol3_delta  96 Liliapkklderkk...lvklLkkkatvveaktlkeeelkkwiqkraqelglkiekealelLlelvennlsaikqelekLal 174
                     Li+ ++ kl+++++   ++  L+++a+ v+++t++ ++l++w+++ra++++l++++ a +lL++++e+nl+a++q+le Lal
      CTQ27062.1 111 LIVRGN-KLTKAQEnaaWLTALAQRAVQVSCQTPEYAQLPRWLAARAKQHQLQLDDAASQLLCYCYEGNLLALAQALERLAL 191
                     ******.*************************************************************************86 PP

>> BET  Bromodomain extra-terminal - transcription regulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     4e-05      0.18       7      37 ..     284     314 ..     281     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4e-05
         BET   7 KkeLseeInkLpgeklgrvveIIqerepelq 37 
                 ++ Ls+++++L+ge+l+++v ++ + e +++
  CTQ27062.1 284 RQLLSDALTRLSGEQLRQAVTLLTRAELTFK 314
                 788********************99986654 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0012       5.4      39      64 ..      30      55 ..      18      57 .. 0.90
   2 ?    0.8   0.0      0.13   5.9e+02      13      40 ..     204     231 ..     198     244 .. 0.79
   3 ?    0.5   0.3      0.16   7.3e+02      17      43 ..     263     289 ..     258     303 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0012
                HHHSSS---HHHHHHHTT-S-HHHHH CS
      HTH_18 39 lLlentglsvaeiAlalGFsdlsrFs 64
                lLl+++++ + e+A+a GF +  +Fs
  CTQ27062.1 30 LLLQESQDAIREAAAAQGFTEHHTFS 55
                68889*****************9998 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.13
                 HHHHHHHTSS-HHHHHHHHHHHHHHHHH CS
      HTH_18  13 qrlfkrvlgltpkeylrrlRlerArrlL 40 
                 ++++++  + tp++++++l   + +r L
  CTQ27062.1 204 EQAVNDAAHFTPYHWVDALLAGKSKRVL 231
                 6678888999999999988877777755 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.16
                 HHHTSS-HHHHHHHHHHHHHHHHHHSS CS
      HTH_18  17 krvlgltpkeylrrlRlerArrlLlen 43 
                 ++ ++++ + + +++R+ + rr+Ll++
  CTQ27062.1 263 RQATHTPLRSLFDKHRVWQNRRQLLSD 289
                 677899999999************963 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2645.57
//
Query:       CTQ27063.1  [L=196]
Description: minor lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-15   55.4   0.1    1.2e-14   54.9   0.1    1.2  1  LptE      Lipopolysaccharide-assembly


Domain annotation for each model (and alignments):
>> LptE  Lipopolysaccharide-assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.1   6.8e-19   1.2e-14       5     107 .]      37     159 ..      33     159 .. 0.74

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 6.8e-19
                 EEEES.STT.SHHHSHHHHHHHHHHH..CHTTEEEES-SSEEEEEEEEEE..............TTSCEEEEEEEEEEEEEEEETT........S.... CS
        LptE   5 yvppfeneseprlgqeltnaLrdelarrgrlkvvdvdadavlegeitsytl.............edgtaseyrltltvqvrltdak........d.... 78 
                   ++  +++     ++l +a+r++l+ +g   v+  da ++l++++ s++l             +dg+++ey++++tv++++  ++        +    
  CTQ27063.1  37 IFQSS-DPN-----GPLSRAVRNQLRLNG---VELIDA-STLRKDVPSLRLdgssiqkdtasvfQDGRTAEYQMVMTVHASVLIPGhdiypittKvyrs 125
                 55555.555.....89**********555...444333.2354444444444444444555555********************988877666515667 PP

                 ....SSCCCHHHHHHHHHH.HHHHHHHHHHHHHH CS
        LptE  79 ....adsllakeaeedalr.raaeqladqivrrl 107
                     ++++lak+ae+d++  ++++++a+q++r+l
  CTQ27063.1 126 ffdnPQAALAKDAEQDMIIqEMYDKAAEQLIRKL 159
                 7778***************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1423.86
//
Query:       CTQ27064.1  [L=860]
Description: leucyl-tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-77  258.4   0.0    5.1e-77  257.6   0.0    1.4  1  tRNA-synt_1_2   Leucyl-tRNA synthetase, Domain 2
    7.9e-70  235.8   8.3    1.8e-25   89.3   0.2    6.1  5  tRNA-synt_1     tRNA synthetases class I (I, L, M and V)
    1.7e-32  112.7   0.1    4.3e-23   81.7   0.0    3.9  4  tRNA-synt_1g    tRNA synthetases class I (M)
    6.7e-16   58.6   0.0    1.2e-15   57.8   0.0    1.4  1  Anticodon_1     Anticodon-binding domain of tRNA
    0.00023   20.6   0.0       0.57    9.5   0.0    2.5  2  tRNA-synt_1e    tRNA synthetases class I (C) catalytic domain
    0.00034   19.7   0.0       0.37    9.6   0.0    2.4  2  tRNA-synt_1f    tRNA synthetases class I (K)
  ------ inclusion threshold ------
      0.014   14.2   0.1      0.023   13.5   0.1    1.2  1  Glyco_hydro_15  Glycosyl hydrolases family 15


Domain annotation for each model (and alignments):
>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.6   0.0     2e-80   5.1e-77       1     184 [.     221     403 ..     221     404 .. 0.98

  Alignments for each domain:
  == domain 1  score: 257.6 bits;  conditional E-value: 2e-80
  tRNA-synt_1_2   1 rnWIGrseGleiefkveeseeklevfttrpdtlfGvtfvalapehplveklaekkkelaafieevkkksesereletkekeGvftglkaihPitge 96 
                    rnWIGrseG+ei+f+v++  +kl+v+ttrpdt++G t++a+a+ hpl++++a+++++la+fi+e+++++ +e++++t+ek+Gv+tg+kaihP+tge
     CTQ27064.1 221 RNWIGRSEGVEISFDVNDYADKLTVYTTRPDTFMGCTYLAVAAGHPLAQQAAANNPALATFIDECRNTKVAEADMATMEKKGVDTGFKAIHPLTGE 316
                    8******************99*************************************************************************** PP

  tRNA-synt_1_2  97 kipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikpedeekkleeseeayteegilvnsgefdglkskeakekiakkl 184
                    +ip+w an+vlmeygtgavmavP+hdqrD+eFa+ky+l+ik+vi  +d++ + + se+a+te+g+l+nsgef+gl++++ +++ia+kl
     CTQ27064.1 317 EIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGS-EPDLSEQALTEKGVLFNSGEFSGLDYEAGFNAIADKL 403
                    *********************************************99987.56667*****************************987 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.2   6.9e-29   1.8e-25       3     178 ..      15     171 ..      13     174 .. 0.88
   2 !   21.9   0.4   1.7e-08   4.4e-05     363     413 ..     174     224 ..     168     228 .. 0.95
   3 !   65.1   0.0   1.5e-21   3.9e-18     188     351 ..     230     408 ..     225     417 .. 0.78
   4 !   29.7   0.0   7.8e-11     2e-07     416     559 ..     417     572 ..     409     575 .. 0.63
   5 !   27.3   0.0   4.1e-10     1e-06     562     594 ..     618     651 ..     610     659 .. 0.86

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 6.9e-29
  tRNA-synt_1   3 yekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgreef 100
                  + +W+e+ +f+ +  ++++k+++      Py  G+lH+Gh+ + t+ d++ ry+rm Gk+vl  +GwD  Gl+ e +  k+ +a              
   CTQ27064.1  15 QLHWDENRTFEVT--EDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAP------------- 97 
                  568********99..555566666666679*******************************************997655553333............. PP

  tRNA-synt_1 101 rekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEv 178
                        w    ++ +++q+k lG  +D++re  T  +e+    ++ f++l++kgl+y+ +  vnw+++ +t+l++  v
   CTQ27064.1  98 ----APWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQV 171
                  ....3577888999************************************************************9765 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 1.7e-08
  tRNA-synt_1 363 pfcerskkpiiyrateqWfvrvkeladaalkavekvqfvpkskekryaswl 413
                  ++c+r ++ ++ +  +qWf+++++ ad++l+ ++k    p++ +++  +w+
   CTQ27064.1 174 GCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWI 224
                  69************************************************8 PP

  == domain 3  score: 65.1 bits;  conditional E-value: 1.5e-21
  tRNA-synt_1 188 ihvafpladkeevklviaTTtPeTllgdtavavnpeldyv..itkeklilaeallkslvkke.sekkiledergkeLegkevelplvnrkipiiaddy 282
                  ++++f+++d ++ kl ++TT+P T++g t +av++    +  +  ++   + + +++  + +  e ++   e+    +g ++++pl++++ip+ a ++
   CTQ27064.1 230 VEISFDVNDYAD-KLTVYTTRPDTFMGCTYLAVAAGHPLAqqAAANNPA-LATFIDECRNTKvAEADMATMEKKGVDTGFKAIHPLTGEEIPVWAANF 325
                  789*********.********************9996666542222222.23344444444434445555555555578999**************** PP

  tRNA-synt_1 283 vdkeaGtGvVkiaPahdedDyevgkkynlev.inildedgt...lteea..........aefeglkvfdarkkvveelkekgl 351
                  v +e GtG+V   P+hd+ Dye + ky+l++ ++il +dg    l+e+a          +ef+gl++++  +++ ++l + g+
   CTQ27064.1 326 VLMEYGTGAVMAVPGHDQRDYEFASKYGLNIkPVILAADGSepdLSEQAltekgvlfnsGEFSGLDYEAGFNAIADKLAAMGV 408
                  *****************************5425666666642225566699999999999*********99999999998875 PP

  == domain 4  score: 29.7 bits;  conditional E-value: 7.8e-11
  tRNA-synt_1 416 iqdWciSRqrwWGhriplfvsketeevvvreelkelv...agreeeeaekkalekeakdklkkekgelekdedvlDvWFsSgswpfstlgypee.... 506
                   +dW +SRqr+WG +ip+   ++   v  + e +  v   ++ +++  ++   ++   +k   + +   +++d++D+  +S sw ++    p++    
   CTQ27064.1 417 LRDWGVSRQRYWGAPIPMVTLEDGT-VLPTPEDQLPVilpEDVVMDGITSPIKADPEWAKTTVNGQPALRETDTFDTFMES-SWYYARYTCPQYqegm 512
                  58****************9999966.665443332220112223322222222222222233344556689******9998.7999999999882222 PP

  tRNA-synt_1 507 .dteelkkffpadmlleGlDi.....irgWvarlillsl.altgsePfkevlvhglvrde 559
                   d++  +   p d+++ G+       + + +   ++     ++ +eP k++l++g+v+++
   CTQ27064.1 513 lDSKAANYWLPVDIYIGGIEHaimhlLYFRFFHKLMRDAgMVNSDEPAKQLLCQGMVLAD 572
                  234455556799******9852222234444445555440555677***********975 PP

  == domain 5  score: 27.3 bits;  conditional E-value: 4.1e-10
  tRNA-synt_1 562 rKmSKslgNvidpldvikkygadalRltli.lsd 594
                   KmSKs+ N idp+ ++++ygad +Rl+++  s+
   CTQ27064.1 618 SKMSKSKNNGIDPQVMVERYGADTVRLFMMfASP 651
                  59***************************95554 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   1.7e-26   4.3e-23       5     146 ..      39     183 ..      35     187 .. 0.92
   2 !    8.5   0.1   0.00029      0.75     162     220 ..     169     226 ..     167     240 .. 0.86
   3 ?    2.9   0.0     0.014        36     218     238 ..     413     433 ..     403     443 .. 0.83
   4 !   21.6   0.0     3e-08   7.6e-05     313     369 ..     605     659 ..     592     673 .. 0.82

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 1.7e-26
                   E--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEE..ETTSHHHHHH CS
  tRNA-synt_1g   5 talpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkyg..rttseehkel 99 
                   + lpY++g+lH+Gh++++ ++D++aRy+r+ g++vl   g D++G p e +A k+++ p+  + ++ + +k+++k l+  +d      t + e ++ 
    CTQ27064.1  39 SMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRelATCTPEYYRW 135
                   679*************************************************************************9999996652269999***** PP

                   HHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG.-EE........- CS
  tRNA-synt_1g 100 vqeifkklkekgliyekeieqlycpkderflpdry.vegtCPkcksee 146
                    q++f++l++kgl+y+k++++ +cp+d++ l++++ ++g C  c ++ 
    CTQ27064.1 136 EQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQvIDGCCWRCDTKV 183
                   *******************************98875799999998765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00029
                   ...............EEE.EEEEEE-GGGGHHHHHHHH.HH-TTSHHHHHHHH.HHHHT CS
  tRNA-synt_1g 162 telinpksaisgskpevketehlffklskfekklkewieeeekeleenvkkivkewlke 220
                   +++i+  +  +++k e ke  ++f k+ +++++l + +  +  ++++ vk++ ++w+ +
    CTQ27064.1 169 EQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDL-DKLDHWPDTVKTMQRNWIGR 226
                   68999*********************************.56669************965 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.014
                   HHT----EE-ESS-SSS-EET CS
  tRNA-synt_1g 218 lkegLkdlaisrdldwGipvP 238
                   ++  L+d+ +sr+  wG p+P
    CTQ27064.1 413 VNYRLRDWGVSRQRYWGAPIP 433
                   56789***************9 PP

  == domain 4  score: 21.6 bits;  conditional E-value: 3e-08
                   S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-HH CS
  tRNA-synt_1g 313 kkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDldfswe 369
                   k  + he + +  +K+SkS++++++++ ++er+ ad++R +++ ++p++  l  +w+
    CTQ27064.1 605 KDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTL--EWQ 659
                   55667888888889*****************************999975444..443 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   4.7e-19   1.2e-15       3     147 ..     700     821 ..     698     827 .. 0.80

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 4.7e-19
  Anticodon_1   3 wilselnklvkevteayee.yrfnkaasalyeffwndlcdwylelvkprlysesaedkraaqevllevletllrllaPfmPfitEelwqreeeelgkk 99 
                   + + ++k++++vt+++ +   fn+a++a++e+ +n+l       +k     e+++d+    +++ e+l +++r+l+Pf+P+ + +lw    +el ++
   CTQ27064.1 700 ALRRDIHKTIAKVTDDIGRrQTFNTAIAAIMEL-MNKL-------AKAPQ--EDEQDR----ALMQEALLAVVRMLNPFTPHASFTLW----RELSGE 779
                  567789************9899**********6.7878.......44433..333344....899***********************....9999** PP

  Anticodon_1 100 esimlaewpekaeelekeleeeevellkeivkairklrselkikpsse 147
                   +i +a+wp ++   e ++     +    +v++++k+r++++++ +++
   CTQ27064.1 780 GDIDNAPWPVAD---ESAM---VEDSTLVVVQVNGKVRGKITVAVDAT 821
                  *********754...3333...22223359************997666 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00022      0.57      21      48 ..      46      73 ..      24      75 .. 0.76
   2 !    8.5   0.0   0.00043       1.1     249     297 ..     615     664 ..     608     668 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00022
                  S--BHHHHHHHHHHHHHHHHHHHTT-EE CS
  tRNA-synt_1e 21 dashlGhaRslvafDilrrilqalgYdv 48
                     h+Gh+R++ + D+++r+ ++lg +v
    CTQ27064.1 46 GRLHMGHVRNYTIGDVIARYQRMLGKNV 73
                  568*****************99999877 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00043
                   ETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS-.TTS-EEE-HHHHH CS
  tRNA-synt_1e 249 iegekmsksLknfitikdvlkkfdprqlRllllsah.yrsqldfkeelle 297
                       kmsks +n i  + +++++ + ++Rl+++ a     +l+++e+ +e
    CTQ27064.1 615 TGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASpADMTLEWQESGVE 664
                   5678**************************99876514566888887766 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00015      0.37       2      64 ..      17      75 ..      16      82 .. 0.75
   2 !    7.4   0.0   0.00071       1.8     277     314 ..     615     652 ..     609     663 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00015
  tRNA-synt_1f  2 aWadklaeklieerkkkkaekdevvvesGispSGliHiGnlrevltadlvaralrkrgeevrl 64
                  +W ++   +++e + k    ++++ ++    pSG++H+G +r+   +d++ar  r +g++v +
    CTQ27064.1 17 HWDENRTFEVTEDESK----EKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQ 75
                  7888888888844322....24555555567*********************99999998755 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00071
  tRNA-synt_1f 277 kggekmssSkGnvltledwlevaepevlrflilrrkPk 314
                    g++kms+Sk n++ ++ ++e +  +++r++++ + P 
    CTQ27064.1 615 TGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPA 652
                   5788*****************99999999988876775 PP

>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   8.9e-06     0.023     310     423 ..     624     753 ..     598     762 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.9e-06
                     GTT-STTS..--SBTT--CG...............SSSBSCT--BHHHHHHHHHHHHHHHHHHHHHTE-EEEECCCHHHHHHHTTTTTGGGSSEE CS
  Glyco_hydro_15 310 avgeldpl..vrRysedvkp...............dklglsGrpyylctlwtvetlldelyekagkgrlwglvryalglleklveskqltvGlpp 387
                     +++ +dp+  v Ry++d+ +               ++ g +G + +l+ +w  + +++  ++ + +   ++++++  + l++ + +  ++v +  
      CTQ27064.1 624 KNNGIDPQvmVERYGADTVRlfmmfaspadmtlewQESGVEGANRFLKRVW--KLVYEHTTKGEVAALNVAALSEDQKALRRDIHKTIAKVTDDI 716
                     4555899999*****************************************..555555554444444455556666666666666455566555 PP

                     E.TCHHHHHHHHHHHHHHHHHHHHHHS-TTS---SEE CS
  Glyco_hydro_15 388 e.resvisaplpveeladliveaveednslgvLteev 423
                       r+++++a+ ++ el +++ +a +ed++++ L +e 
      CTQ27064.1 717 GrRQTFNTAIAAIMELMNKLAKAPQEDEQDRALMQEA 753
                     56************************88888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.49
# Mc/sec: 5326.00
//
Query:       CTQ27065.1  [L=161]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-56  189.1   0.2    4.6e-56  188.9   0.2    1.0  1  DUF1451         Zinc-ribbon containing domain
  ------ inclusion threshold ------
      0.035   14.1   0.5       0.08   13.0   0.2    1.7  2  HypA            Hydrogenase/urease nickel incorporation, meta
      0.036   14.0   2.3        4.7    7.2   0.1    2.4  2  PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
      0.044   13.9   0.6      0.082   13.1   0.4    1.6  1  T4_Rnl2_C       T4 RNA ligase 2 C-terminal
      0.046   14.5   0.4      0.097   13.4   0.4    1.5  1  TniQ            TniQ
       0.05   13.5   3.8      0.085   12.7   3.8    1.4  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
      0.052   13.7   1.2       0.12   12.5   1.2    1.6  1  Zn-ribbon_8     Zinc ribbon domain
       0.06   13.8   0.7       0.19   12.2   0.5    1.8  2  ParB            ParB family
      0.065   13.2   0.1      0.073   13.0   0.1    1.1  1  PXA             PXA domain
      0.073   12.8   1.8       0.18   11.5   1.8    1.7  1  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal
       0.09   12.5   1.6        1.5    8.6   0.2    2.2  2  zinc_ribbon_2   zinc-ribbon domain
       0.23   11.0   2.4        6.9    6.3   0.2    2.6  2  TF_Zn_Ribbon    TFIIB zinc-binding
       0.53   10.6   2.1          1    9.7   0.2    2.0  2  DUF2072         Zn-ribbon containing protein
       0.55   10.3   3.3        1.2    9.2   3.3    1.5  1  ADK_lid         Adenylate kinase, active site lid
          7    6.6   6.3         12    5.8   0.5    2.6  3  TFIIS_C         Transcription factor S-II (TFIIS)


Domain annotation for each model (and alignments):
>> DUF1451  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.9   0.2   3.9e-59   4.6e-56       2     147 .]      15     158 ..      14     158 .. 0.98

  Alignments for each domain:
  == domain 1  score: 188.9 bits;  conditional E-value: 3.9e-59
     DUF1451   2 sleeaeekseeeleelvekakeklseaeeltkeelelvaeylkrDleeaarsleeskeeleewlsldlelieesllealasiaDktqvelaelaedleh 100
                 sl+e+ +++e+++++lv++a+ek++ a++lt++e+e v +++krDlee+ars+ees+e  +e++s+++++i+esl+++la+i+Dktq+e++e+++dl+h
  CTQ27065.1  15 SLSERLRHGERDIDALVTQAREKIVRAGDLTQSEIESVIAAVKRDLEEFARSYEESHE--DESDSVFMRVIKESLWQELADITDKTQLEWREVFQDLNH 111
                 68999*****************************************************..69************************************* PP

     DUF1451 101 agvyqsGevvglGtlvCekCgkelalkkteeippCpkCgateFrRep 147
                 +gvy+sGevvglG+lvCekC+ +la+++++++p+CpkCg+++F+R+p
  CTQ27065.1 112 HGVYHSGEVVGLGNLVCEKCHYHLAVYTPDVLPRCPKCGHDQFQRRP 158
                 *********************************************86 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         3   3.5e+03      31      43 ..      39      51 ..      11      65 .. 0.66
   2 ?   13.0   0.2   6.7e-05      0.08      70      98 ..     125     155 ..     114     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3
                EEEETTCT--HHH CS
        HypA 31 vevGelsgvepea 43
                v+ G+l++ e e+
  CTQ27065.1 39 VRAGDLTQSEIES 51
                4445554444444 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 6.7e-05
                 EEEETTTS-EEECHH.H.HHS-TTTSSS-EE CS
        HypA  70 kvrCreCgkefelee.k.alrCpkCgsadve 98 
                 ++ C++C+++  + + +   rCpkCg+ +++
  CTQ27065.1 125 NLVCEKCHYHLAVYTpDvLPRCPKCGHDQFQ 155
                 578*******9977644566******98875 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1     0.004       4.7      19      27 ..     125     133 ..     114     134 .. 0.86
   2 ?    6.3   0.2     0.008       9.5       2       9 ..     143     150 ..     142     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.004
  PhnA_Zn_Ribbon  19 llvCpeCah 27 
                     +lvC++C++
      CTQ27065.1 125 NLVCEKCHY 133
                     79*****97 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.008
  PhnA_Zn_Ribbon   2 lpkCplCa 9  
                     lp Cp+C+
      CTQ27065.1 143 LPRCPKCG 150
                     68888885 PP

>> T4_Rnl2_C  T4 RNA ligase 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   6.9e-05     0.082      14      78 ..      27      89 ..      15      93 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.9e-05
                HGGG--HHHHHHHHHTSS--STTTHHHHHHHHHHHHHHHHHHT...T-.-SSSSSSHHHHHHHHHH CS
   T4_Rnl2_C 14 ierYvtenRLnNviSKigeitrknfgkvlkafvqDaledfnkeeeael.sslskeeqkvikkklnk 78
                i+++vt+ R +  i + g++t++++++v++a+++D le+f + +e+ + ++ ++   +vik++l +
  CTQ27065.1 27 IDALVTQAREK--IVRAGDLTQSEIESVIAAVKRD-LEEFARSYEESHeDESDSVFMRVIKESLWQ 89
                66666666643..5578******************.7******97777244445556666666655 PP

>> TniQ  TniQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.4   8.1e-05     0.097       7     115 ..       8     155 ..       4     159 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.1e-05
        TniQ   7 vpdEslsSylaRlaean.............gvspkellrglfaeskrsladedldlnl..........................erLaeltglspeel. 65 
                 +  E++sS   Rl +                v +++l+++++++    ++ + +++ +                          ++++++t+l+++e+ 
  CTQ27065.1   8 YYRELVSSLSERLRHGErdidalvtqarekIVRAGDLTQSEIESVIAAVKRDLEEFARsyeeshedesdsvfmrvikeslwqelADITDKTQLEWREVf 106
                 66788888888888888666666666665324444444444444444443333333336666777778888899999999*9999*************8 PP

        TniQ  66 eemtlegylasvllekakrekkllgeaisrrglrrsgrryCplClaedge 115
                 +++  +g+++s      ++ +++  + +  ++ ++  +  Cp+C +++ +
  CTQ27065.1 107 QDLNHHGVYHSGEVVGLGNLVCEKCHYHLAVY-TPDVLPRCPKCGHDQFQ 155
                 88888888866666666666666666666666.9999*******998876 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   3.8   7.1e-05     0.085      19      93 ..       4      78 ..       1     113 [. 0.62

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.1e-05
                    CHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCC CS
  Apolipoprotein 19 qlaplaqelrdrlskeleelrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeel 93
                    ++a++++el+  ls++l    + ++a ++++r+++    d  q ++++ + +++++l+++++ + e+++ +++ +
      CTQ27065.1  4 KVAQYYRELVSSLSERLRHGERDIDALVTQAREKIVRAGDLTQSEIESVIAAVKRDLEEFARSYEESHEDESDSV 78
                    566666666666666666666666666666677776666666677777777777777666666666665555543 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.2    0.0001      0.12       7      38 ..     127     156 ..     125     158 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0001
  Zn-ribbon_8   7 rCeeCghefevlqsisdapltaCPeCgs.evrr 38 
                   Ce+C+    v  +   + l+ CP+Cg+ + +r
   CTQ27065.1 127 VCEKCHYHLAVYTP---DVLPRCPKCGHdQFQR 156
                  69999977777764...34888******99998 PP

>> ParB  ParB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.63   7.6e+02      14      42 ..      12      40 ..       4      48 .. 0.77
   2 ?   12.2   0.5   0.00016      0.19      23      75 ..      43      97 ..      33     112 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.63
        ParB 14 lLlkvaeklekkdvelseliekvkeeiek 42
                l + ++e+l++ + ++++l+ + +e+i  
  CTQ27065.1 12 LVSSLSERLRHGERDIDALVTQAREKIVR 40
                44578899999999999999999988865 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00016
        ParB 23 ekkdvelseliekvkeeiekvqsdt.elaedeqkseilklikkes.krlkkpkkk 75
                + +++e++++i++vk+++e+  + + e++ede+ s  +++ik++  ++l +   k
  CTQ27065.1 43 DLTQSEIESVIAAVKRDLEEFARSYeESHEDESDSVFMRVIKESLwQELADITDK 97
                567899**************97766156799999********9872444444444 PP

>> PXA  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   6.1e-05     0.073      20     106 ..       5     112 ..       1     150 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.1e-05
         PXA  20 VlsWYski.ssdeeFptevrsilrsviralanrl.kkvDlaqllltrlldlltshlrdyrqaeekvkskkae...................eesdldla 97 
                 V  +Y+++ ss +e +++ ++ + +++ + ++ + ++ Dl+q  ++++++ +++ l+++ ++ e+++++++                    ++++l+++
  CTQ27065.1   5 VAQYYRELvSSLSERLRHGERDIDALVTQAREKIvRAGDLTQSEIESVIAAVKRDLEEFARSYEESHEDESDsvfmrvikeslwqeladitDKTQLEWR 103
                 667788777888888888888888999999999889999999999**************99999988887779*****************999999999 PP

         PXA  98 akffaleph 106
                 ++f +l+ h
  CTQ27065.1 104 EVFQDLNHH 112
                 999997776 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.8   0.00015      0.18      22      52 ..     125     151 ..     122     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
  zinc_ribbon_10  22 alICskChshnGlapkeeleevkyrCpkCga 52 
                      l+C+kCh h  ++      +v  rCpkCg+
      CTQ27065.1 125 NLVCEKCHYHLAVY----TPDVLPRCPKCGH 151
                     59*********999....5666679****98 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.076        91      16      23 .]     128     135 ..     119     135 .. 0.75
   2 ?    8.6   0.2    0.0013       1.5      16      21 ..     146     151 ..     142     153 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.076
  zinc_ribbon_2  16 CpyCGtpl 23 
                    C++C ++l
     CTQ27065.1 128 CEKCHYHL 135
                    88887765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0013
  zinc_ribbon_2  16 CpyCGt 21 
                    Cp+CG+
     CTQ27065.1 146 CPKCGH 151
                    566655 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2     0.029        35      18      25 ..     124     131 ..     122     133 .. 0.92
   2 ?    6.3   0.2    0.0058       6.9       2      11 ..     145     154 ..     144     160 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.029
                   TCEEESSS CS
  TF_Zn_Ribbon  18 gelvCtdC 25 
                   g+lvC++C
    CTQ27065.1 124 GNLVCEKC 131
                   99****** PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0058
                   EETTTTCEEC CS
  TF_Zn_Ribbon   2 kCPnCgstnl 11 
                   +CP+Cg++++
    CTQ27065.1 145 RCPKCGHDQF 154
                   6*****9874 PP

>> DUF2072  Zn-ribbon containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.56   6.6e+02      57      70 ..      49      62 ..      10     103 .. 0.55
   2 ?    9.7   0.2   0.00084         1       4      31 ..     128     155 ..     126     157 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.56
     DUF2072 57 ieevldaeeteeek 70
                ie+v++a +++ e+
  CTQ27065.1 49 IESVIAAVKRDLEE 62
                33333332222222 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00084
     DUF2072   4 CtkCekvfedgskeilkGCpsCGgkkFl 31 
                 C kC+  +   + ++l  Cp+CG  +F+
  CTQ27065.1 128 CEKCHYHLAVYTPDVLPRCPKCGHDQFQ 155
                 99***********************996 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.3   0.00098       1.2       3      34 ..     127     156 ..     126     157 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00098
                 E-TTT--EEETTTB--SSTTB-TTT--.-B-- CS
     ADK_lid   3 vCpkCGrsYhvvfnpPkveglCDkCGepLvqR 34 
                 vC+kC   Yh++   P v   C kCG + +qR
  CTQ27065.1 127 VCEKCH--YHLAVYTPDVLPRCPKCGHDQFQR 156
                 899995..**98899************99999 PP

>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.9   7.1e+03      22      29 ..      73      80 ..      72      81 .. 0.84
   2 ?    3.7   0.1     0.046        54       2      13 ..     127     138 ..     126     140 .. 0.83
   3 ?    5.8   0.5      0.01        12       2       9 ..     145     152 ..     144     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.9
     TFIIS_C 22 DEpmtvfy 29
                DE+ +vf+
  CTQ27065.1 73 DESDSVFM 80
                99999997 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.046
     TFIIS_C   2 kCpkCgsreayf 13 
                  C+kC+ + a++
  CTQ27065.1 127 VCEKCHYHLAVY 138
                 5999*9999888 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.01
     TFIIS_C   2 kCpkCgsr 9  
                 +CpkCg++
  CTQ27065.1 145 RCPKCGHD 152
                 59999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1577  (0.0879581); expected 358.6 (0.02)
Passed bias filter:                     1175  (0.0655363); expected 358.6 (0.02)
Passed Vit filter:                       161  (0.00897987); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1151.74
//
Query:       CTQ27066.1  [L=597]
Description: Filamentous hemagglutinin family domain-containing protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-30  104.1   7.1    4.3e-30  104.1   7.1    4.5  5  Haemagg_act  haemagglutination activity domain


Domain annotation for each model (and alignments):
>> Haemagg_act  haemagglutination activity domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   7.1   2.4e-34   4.3e-30      18     119 ..      29     148 ..      19     150 .. 0.94
   2 ?   -0.6   0.3     0.062   1.1e+03      71      99 ..     182     213 ..     177     226 .. 0.66
   3 ?   -3.1   2.3      0.39     7e+03      42      80 ..     266     303 ..     241     339 .. 0.60
   4 ?   -3.7   3.2      0.58     1e+04      28      95 ..     404     471 ..     386     474 .. 0.68
   5 ?    1.7   0.3     0.012   2.2e+02       3      80 ..     478     559 ..     475     574 .. 0.69

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 2.4e-34
                  ETCS-ECCEEEEEETTSEEEEEECE--B-TTEEEEEE-.S.................SSTTSEEEEEE-SSS-EEEECEEEEEECSCEEEEE-TT-EE CS
  Haemagg_act  18 agngvpivniatpqkggnsfnsfseFnvpeggvvlfna.q.................ngaasvilnrVtggspSkIqGaievlgakanlflaNpnGii 97 
                   ++g+++++i +p+++g+s+n +++Fnv+++g++l+n+                   +g+asviln+Vt++++S+++G iev g+ka++++aNpnGi+
   CTQ27066.1  29 HSSGATVIDIEKPNAAGVSHNLYRDFNVGANGTILNNSgDdvshstfgniarnnnltAGSASVILNEVTSKNASSLKGFIEVNGQKADVVIANPNGIT 126
                  567889*******************************755********************************************************** PP

                  EECCEEECECEEEEESSEECCE CS
  Haemagg_act  98 fggnatiniggsfvtttapsik 119
                  ++g++++n++++++tt++ +++
   CTQ27066.1 127 CSGCSFVNTNKAILTTGKVNMT 148
                  *****************99886 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.062
                  S-EEEECEEEEEE...CSCEEEEE-TT-EEEE CS
  Haemagg_act  71 spSkIqGaievlg...akanlflaNpnGiifg 99 
                  ++++I+G++++ +   + +n  + N +G + +
   CTQ27066.1 182 DAININGKVQANNalvSAGNFTMDNSSGSVTS 213
                  67788888886445556666666666665555 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.39
                  E--B-TTEEEEEE-SSSTTSEEEEEE-SSS-EEEECEEE CS
  Haemagg_act  42 eFnvpeggvvlfnaqngaasvilnrVtggspSkIqGaie 80 
                  + ++ ++g  l++  + + +  l++V   s ++ +G i 
   CTQ27066.1 266 SLQLTSNGNLLNK-GTIKSNGLLSQVATASGITNDGSIA 303
                  3444455555555.4666677778887777666666665 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 0.58
                  EEEETTSEEEEEECE--B-TTEEEEEE-SSSTTSEEEEEE-SSS-EEEECEEEEEE.CSCEEEEE-TT- CS
  Haemagg_act  28 atpqkggnsfnsfseFnvpeggvvlfnaqngaasvilnrVtggspSkIqGaievlg.akanlflaNpnG 95 
                   ++++g++ + s ++   ++ g +++   n + ++i  + +g+ + +  G+ie+ +  +a  + +N+nG
   CTQ27066.1 404 NINSTGQTTIQSLKQDGSANTGEIYNL-GNITGENINLQTNGTLAQSSSGRIEATNaITAHSYWLNQNG 471
                  455666666666666666666666666.56677777777777777777788887665566667777777 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.012
                  TSEECCCEEEC-EEEETCS-ECCEEEEEETTSEEEEEECE--B-TTEEEEEE-S...SSTTSEEEEEE.-SSS-EEEECEEE CS
  Haemagg_act   3 iapdgtlvtnvkakkagngvpivniatpqkggnsfnsfseFnvpeggvvlfnaq...ngaasvilnrV.tggspSkIqGaie 80 
                  i+ d++ v+n  + +a+n  +++   + ++g++s  +  + n +++g++++ ++   +g+ ++  ++V +gg+   I G  +
   CTQ27066.1 478 ITTDHGVVNNYGNITAKNISITTYSDITNEGQISSTDDLTLNTKNKGAIYNYSTlsaGGNMTLTATKVvNGGKSCGILGLAK 559
                  5566666666665555555555555577999999999999999999999999635565555555556536777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4617.24
//
Query:       CTQ27067.1  [L=556]
Description: putative hemolysin activator HlyB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-91  306.9  14.7    2.2e-91  306.5  14.7    1.2  1  ShlB      Haemolysin secretion/activation protein ShlB/FhaC/H
    2.4e-15   55.7   0.0    6.3e-15   54.4   0.0    1.7  2  POTRA_3   POTRA domain
    1.2e-13   50.7   0.7    2.5e-13   49.7   0.1    1.9  2  POTRA_2   POTRA domain, ShlB-type


Domain annotation for each model (and alignments):
>> ShlB  Haemolysin secretion/activation protein ShlB/FhaC/HecB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.5  14.7   3.8e-95   2.2e-91       1     312 []     207     520 ..     207     520 .. 0.97

  Alignments for each domain:
  == domain 1  score: 306.5 bits;  conditional E-value: 3.8e-95
                 TEEEEEEEEEE-SS-EEEEEEEE-S-TTEEEEEEEEEEEEE-SSSSS-EEEEEEEEEEESSTTT-EEEEEEEEEEEEETTEEEEEEEEEEEEEEE---- CS
        ShlB   1 GeSdvvitnqrskpwrlslslDNsGskstGryqgsaslsldnllglnDllslsysrdldkeksdrgsrsyslsysvPygywtfslsaseseykqtvaga 99 
                 GeSd++i ++ +k+w+l+++lD+ Gsk++Gryq++ +l+l +l+ lnD+l+ls++ d++++++++g+++ sl+ys+P+gywt+s+++ +s+y+q+++g+
  CTQ27067.1 207 GESDIQIARSLAKKWQLGAWLDDDGSKASGRYQAGGALYLYDLTTLNDILYLSGGGDIEFNQHNDGNHNGSLYYSIPFGYWTLSAYGAYSQYRQQFNGN 305
                 9************************************************************************************************** PP

                 ----EEEEEEEEEEEEEEEEEEE-SSEEEEEEEEEEEEEEEEEEESSS-EEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEE-----------..... CS
        ShlB 100 nqtykssGksknlslklsrvlyRdqssktslsaqlekkrsknyindtelevqsrrltslelglnhrqylgggvldldlgykrGlgwfgaqedke..e.. 194
                 + t+++++k++++s++lsr+l++++++kt+++++++k  s++y+ ++el v+++++ s+e+ lnh++y+++ ++d+++g++r l+w++++ ++e  +  
  CTQ27067.1 306 WSTMDYKSKNRYYSATLSRLLSHTRQQKTTADLRIAKSTSHYYFGGSELLVMRKQNPSWEFTLNHQHYFNKKIVDASIGIQRSLPWLSSTATPEeqAgl 404
                 *******************************************************************************************99975267 PP

                 ...--EEEEEEEEEEEEEETTEE.EEEEEEEEEEE-SS-SSCCCSEEESSTTSSTT--.TT-EEESEEEEEEEEEEEEEEEEE--CEEEEEEEEEEEEE CS
        ShlB 195 ptaqfrkltldlslsqpfalkqqklryssslsgQyskdaLysseqlsiGgrytVRGFd.eqslsgdsGfylrNelswplalklalselepylglDyGrv 292
                  +  +r++ ++l+ + +f+++ +k+++  +ls+Q+s+d+L s ++++iG+r++VRGFd e+slsg++G+y+rN++ w la      e ++ylg+D+Gr+
  CTQ27067.1 405 YSPLSRIVHGNLQAMMKFDATGDKFTWAPRLSAQFSPDKLASDNKFNIGSRWSVRGFDgENSLSGNQGWYWRNDFIWDLA----THERQFYLGADIGRL 499
                 7889***************88889******************************************************55....9************** PP

                 EE-SSS-EEE.EEEEEEEEEE CS
        ShlB 293 kgkassaeel.laGaalGlrg 312
                  g    ++ + l+Ga+ Glrg
  CTQ27067.1 500 IGADLYQKGKvLSGAVSGLRG 520
                 **777777779********97 PP

>> POTRA_3  POTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0     1e-18   6.3e-15       1      56 []     149     202 ..     149     202 .. 0.98
   2 ?   -3.5   0.0       1.2   7.5e+03       4      23 ..     263     283 ..     262     284 .. 0.76

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1e-18
                 EEEEEEETTEE-SHHHHHHHHSTT-TT-B--HHHHHHHHHHHTSSSEE.EEEEEEE CS
     POTRA_3   1 kieairlngkssktdaglataFPaskGdvLnLrdiEQGleqlnRlpsnqaeiqIlP 56 
                 k++ai +++ s  ++++l++++P s G +L+L+d+EQG+ +l+Rlp+++a++++lP
  CTQ27067.1 149 KVGAIDYADGS--DTTRLWNSLPTSSGTILRLSDLEQGMANLQRLPGATAHMKLLP 202
                 799******88..******************************************9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.2
                 EEEETTEE.-SHHHHHHHHST CS
     POTRA_3   4 airlngks.sktdaglataFP 23 
                 +i++n+++ ++  ++l+ ++P
  CTQ27067.1 263 DIEFNQHNdGNHNGSLYYSIP 283
                 799999887778888877776 PP

>> POTRA_2  POTRA domain, ShlB-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.1   4.1e-17   2.5e-13       3      74 ..      74     146 ..      73     148 .. 0.94
   2 ?   -3.5   0.0       1.6   9.4e+03      31      45 ..     176     190 ..     172     191 .. 0.74

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 4.1e-17
                 .SEEEEES.GCCSSHCCHHHHHCCCSSSEEEHHHHHHHHHHHHHHHHHTT-TT-EEEEEECCEETTEEEEEEE CS
     POTRA_2   3 ikkieleg.ntllsleeleallqpylgkclgladlnqlakeltnayiekGYvtsrvllppqdlesGtlklkVv 74 
                 i++++++  n++l+++ l++++++++g+clg++++  la  l+n +i++GY+ts + +p q+le+G l+ ++ 
  CTQ27067.1  74 INRVDIDSdNQALTRKLLAKTARQAQGRCLGSEGIRLLAYTLQNELIAQGYITSLIDVPSQSLEHGILRFTLH 146
                 7888877769***********************************************************9986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.6
                 EEHHHHHHHHHHHHH CS
     POTRA_2  31 lgladlnqlakeltn 45 
                 l l+dl+q +++l+ 
  CTQ27067.1 176 LRLSDLEQGMANLQR 190
                 678888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.20s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4371.37
//
Query:       CTQ27068.1  [L=241]
Description: glutamate/aspartate transport protein (ABC superfamily, atp_bind) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-33  115.0   0.0    4.7e-33  114.6   0.0    1.2  1  ABC_tran      ABC transporter
    5.3e-09   36.3   0.1    0.00073   19.4   0.0    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    2.5e-07   30.4   0.5    1.1e-06   28.2   0.5    1.9  1  SMC_N         RecF/RecN/SMC N terminal domain
    6.5e-05   23.2   0.3    0.00016   21.9   0.3    2.0  1  AAA_22        AAA domain
    9.8e-05   22.3   0.1    0.00021   21.3   0.1    1.5  1  RsgA_GTPase   RsgA GTPase
    0.00025   20.7   0.1    0.00051   19.7   0.1    1.5  1  AAA_29        P-loop containing region of AAA domain
     0.0004   20.4   0.0    0.00052   20.0   0.0    1.2  1  Rad17         Rad17 P-loop domain
    0.00042   20.5   0.3    0.00072   19.7   0.3    1.8  1  AAA_33        AAA domain
    0.00071   20.0   0.1     0.0011   19.4   0.1    1.6  1  AAA_16        AAA ATPase domain
     0.0033   16.3   1.2        2.7    6.7   0.1    3.0  2  ABC_ATPase    Predicted ATPase of the ABC class
  ------ inclusion threshold ------
       0.01   14.7   0.1      0.015   14.2   0.1    1.2  1  DLIC          Dynein light intermediate chain (DLIC)
      0.011   15.7   0.1       0.38   10.6   0.0    2.3  2  TK            Thymidine kinase
      0.012   15.3   0.1        1.9    8.1   0.1    2.1  2  AAA_15        AAA ATPase domain
      0.014   15.3   0.3       0.05   13.5   0.1    1.9  2  ATPase_2      ATPase domain predominantly from Archaea
      0.017   14.9   0.0       0.03   14.0   0.0    1.5  1  IstB_IS21     IstB-like ATP binding protein
      0.018   14.4   0.1      0.036   13.4   0.0    1.5  2  ATPase        KaiC
      0.019   13.7   0.0       0.24   10.0   0.0    2.0  2  AAA_13        AAA domain
       0.02   14.8   0.4      0.039   13.9   0.4    1.5  1  NTPase_1      NTPase
       0.02   14.5   0.8      0.043   13.4   0.1    1.9  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.021   15.4   0.3      0.038   14.5   0.3    1.6  1  AAA_18        AAA domain
      0.025   14.3   0.3      0.025   14.3   0.3    1.9  2  AAA_30        AAA domain
      0.027   15.0   0.0      0.051   14.1   0.0    1.4  1  AAA_23        AAA domain
       0.03   13.4   0.1      0.058   12.4   0.1    1.5  1  T2SSE         Type II/IV secretion system protein
      0.032   14.0   0.2      0.096   12.4   0.0    1.8  2  AAA_24        AAA domain
      0.049   12.9   0.0      0.076   12.3   0.0    1.3  1  Septin        Septin
      0.057   12.1   0.1      0.082   11.6   0.1    1.2  1  RNA12         RNA12 protein
      0.064   12.6   0.0       0.17   11.3   0.0    1.7  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.071   12.6   0.1       0.12   11.9   0.1    1.3  1  AAA_7         P-loop containing dynein motor region
      0.081   13.2   0.9        3.2    8.1   0.3    2.9  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
      0.086   13.2   0.1       0.22   11.9   0.0    1.7  1  RNA_helicase  RNA helicase
      0.086   12.6   0.3       0.25   11.1   0.1    1.8  2  ATP_bind_1    Conserved hypothetical ATP binding protein
       0.12   11.7   0.1       0.24   10.7   0.1    1.5  1  Zeta_toxin    Zeta toxin
       0.13   11.8   0.6       0.33   10.5   0.2    1.8  2  AAA_25        AAA domain
       0.14   12.2   0.1       0.55   10.3   0.0    2.0  2  AAA_14        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.0   8.9e-36   4.7e-33       1     137 []      17     165 ..      17     165 .. 0.88

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 8.9e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren..............esde 83 
                 l + s ++k+ge+v++ G++G+GKStL+k++ gl+  ++G+i +dg+ +++  ++l +lr+++g+++q+ +lfp+l++ +n               +++
  CTQ27068.1  17 LTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGQIIVDGTVVNDkkTNLAKLRSHVGMVFQHFELFPHLSIIDNltlaqvkvlnrdkaSARK 115
                 568899********************************************99999********************************999875433333 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +  k+l+++gl      ++++ p++LSgGq+qrva+aral+ +p  +l+DEpt+
  CTQ27068.1 116 KGLKLLERVGLAA----HAEKYPAQLSGGQQQRVAIARALCMDPIAMLFDEPTS 165
                 3555555555555....445667*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.7e-05     0.014       2      23 ..      30      51 ..      29      79 .. 0.79
   2 !   19.4   0.0   1.4e-06   0.00073     234     297 ..     134     194 ..      85     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.7e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldlla 23
                 v+ Gp gsGKS+L+++  +l 
  CTQ27068.1 30 VVVCGPSGSGKSTLIKTVNGLE 51
                799**************99984 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.4e-06
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 +++lS G+++  a++ al  ++      l+DEp + L+P+++ ++l+++ el+++g   +++TH
  CTQ27068.1 134 PAQLSGGQQQRVAIARALCMDP---IAMLFDEPTSALDPEMINEVLDVMVELANEGMTMMVVTH 194
                 5677888888867777777777...77**********************999999999999999 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.5   2.2e-09   1.1e-06      24     207 ..      27     204 ..      11     216 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 2.2e-09
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkke 122
                  ++ ++ Gp GSGKs l+  +    G +  ++ +      +++ +k++ +  + +v ++f++ +       +++si  ++   +      ++ +++ k+
  CTQ27068.1  27 GEVVVVCGPSGSGKSTLIKTV---NGLEPVQQGQIIVDGTVVNDKKTNLAKLRSHVGMVFQHFELF-----PHLSIIDNLTLAQVKVLNRDKASAR-KK 116
                 4578999************99...465555333333344566667777888888999999887776.....5566665555555533333333333.44 PP

                 HHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SC CS
                 xxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadk 207
                   +lle++g+  +      +LSgG+++ va+a  + +   +p + +l+De  +aLD + +++v +++ e  ++ + ++v++++ ++ +k+ +
  CTQ27068.1 117 GLKLLERVGLAAHaekypaQLSGGQQQRVAIARALCM---DPIA-MLFDEPTSALDPEMINEVLDVMVELANEgMTMMVVTHEMGFARKVAN 204
                 4567777777666566666**********99988665...4554.589***************998887776669*******9999887643 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.3   3.1e-07   0.00016       4      54 ..      26      69 ..      22     200 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.1e-07
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstssk 54
                +  ++vv+G+sG+GK+tl++++    +        + +++ v+ ++ ++ k
  CTQ27068.1 26 KGEVVVVCGPSGSGKSTLIKTVNGLEPV-------QQGQIIVDGTVVNDKK 69
                56789****************9998876.......4444444444444333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   3.9e-07   0.00021      96     129 ..      23      57 ..      11      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.9e-07
                  HCTT.SEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase  96 llkd.ktsvlvGqSGvGKStLinallpelelktge 129
                  ++k+ +++v++G+SG GKStLi+++++ + ++ g+
   CTQ27068.1  23 EVKKgEVVVVCGPSGSGKSTLIKTVNGLEPVQQGQ 57 
                  445449****************9998865555554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   9.7e-07   0.00051      17      39 ..      22      44 ..       6      50 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 9.7e-07
      AAA_29 17 ieidlkg.atlltGpsGsGKSTll 39
                 e++  g ++++ GpsGsGKSTl+
  CTQ27068.1 22 TEVKK-GeVVVVCGPSGSGKSTLI 44
                45554.4599*************9 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   9.9e-07   0.00052      39     139 ..      21     122 ..       4     166 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 9.9e-07
       Rad17  39 vLesrkkriLLisGPsGCgkstvvkvLsk.elgiklrewlnpvslkepdnqksdfkglt.ekesrf..lsqiesfkeleLkdakylklqklGddlrtdk 133
                 + e +k ++++++GPsG gkst +k +   e + + +  ++++ +++ + +   +++ +  ++++f   + +    +l L + k   l+ + +    +k
  CTQ27068.1  21 STEVKKGEVVVVCGPSGSGKSTLIKTVNGlEPVQQGQIIVDGTVVNDKKTNLAKLRSHVgMVFQHFelFPHLSIIDNLTLAQVKV--LN-RDKASARKK 116
                 55667777*****************997614455556667888876666655555554412334334366666666666555544..44.444445555 PP

       Rad17 134 klilve 139
                  l l+e
  CTQ27068.1 117 GLKLLE 122
                 565655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.3   1.4e-06   0.00072       1      19 [.      29      47 ..      29     206 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.4e-06
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                +v+++G++GsGKstl++ +
  CTQ27068.1 29 VVVVCGPSGSGKSTLIKTV 47
                89**************987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   2.1e-06    0.0011      18      46 ..      23      49 ..      14     221 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.1e-06
      AAA_16 18 rvrsgrpelvllsGesGvGKsslvrellr 46
                 v++g  e+v++ G+sG+GKs+l++++  
  CTQ27068.1 23 EVKKG--EVVVVCGPSGSGKSTLIKTVNG 49
                55555..89***************99974 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1     0.005       2.7     242     264 ..      24      47 ..      22      91 .. 0.88
   2 !    6.5   0.2    0.0059       3.1     324     416 ..     138     214 ..     129     238 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.005
                 E-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAl 264
                 ++kG v+++ G+   GKsTL++ +
  CTQ27068.1  24 VKKGeVVVVCGPSGSGKSTLIKTV 47 
                 78999***************9976 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0059
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEE CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmeeykp 416
                 SG   q ++i++al ++  ++L+DE tsA                  e i+ ++d + el ++ g+++++v+  +g   +vA++vi m+e k+
  CTQ27068.1 138 SGGQQQRVAIARALCMDPIAMLFDEPTSALD---------------PEMINEVLDVMVEL-ANEGMTMMVVTHEMGFARKVANRVIFMDEGKI 214
                 6666666777777777777777777777643...............33444455555555.55566666666666666666666666666555 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.8e-05     0.015      14      55 ..      16      57 ..      10      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.8e-05
        DLIC 14 vstrsssklPsgksvlvlGedgsGkttliaklqGveeekkGr 55
                v t +s+ +  g  v+v G +gsGk+tli  + G+e  ++G+
  CTQ27068.1 16 VLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGQ 57
                77999999****************************999986 PP

>> TK  Thymidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00071      0.38       2      63 ..      28      88 ..      27     124 .. 0.77
   2 ?    3.0   0.0      0.15        80      91     123 ..     173     205 ..     167     220 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00071
          TK  2 sielilgpmfaGKsteLlrrvkryqlaekkvvvi..kaakdnRysegkvvthdgisleakkskt 63
                ++ +++gp  +GKst L+++v+ ++  ++  +++  + ++d++ + +k+ +h g+ ++    + 
  CTQ27068.1 28 EVVVVCGPSGSGKST-LIKTVNGLEPVQQGQIIVdgTVVNDKKTNLAKLRSHVGMVFQHF--EL 88
                6789*********97.9********9999888883356678888888******9999887..44 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.15
          TK  91 qdivelseklanegkivivagLdtdFerklFen 123
                 +++++++ +laneg++++v   ++ F+rk+ + 
  CTQ27068.1 173 NEVLDVMVELANEGMTMMVVTHEMGFARKVANR 205
                 4788888899****************9998665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0036       1.9      15      41 ..      18      45 ..      14      74 .. 0.85
   2 ?    5.1   0.0      0.03        16     324     365 ..     155     195 ..     136     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0036
      AAA_15 15 kdveidlsee.ltvliGkNnsGKSsile 41
                 d++ ++++  + v++G+ +sGKS++++
  CTQ27068.1 18 TDCSTEVKKGeVVVVCGPSGSGKSTLIK 45
                5666666666699************997 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.03
      AAA_15 324 nvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                 ++  l++EP   L p++ +++ + + elan++    ++ TH 
  CTQ27068.1 155 PIAMLFDEPTSALDPEMINEVLDVMVELANEGM-TMMVVTHE 195
                 56789***************************7.89999995 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   9.5e-05      0.05      18      40 ..      25      47 ..      20      71 .. 0.89
   2 ?   -1.4   0.0       3.5   1.8e+03     120     162 ..     156     192 ..     147     205 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.5e-05
    ATPase_2 18 epneiyfiYGpegsGKtaLlkei 40
                ++ e++++ Gp gsGK++L+k +
  CTQ27068.1 25 KKGEVVVVCGPSGSGKSTLIKTV 47
                56799***************975 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.5
    ATPase_2 120 iiiiiDelqklidlglngaellvkeLlnliesltkekhlcvvi 162
                 i++++De   +     +   ++++e l+++++l +e  +++v+
  CTQ27068.1 156 IAMLFDEPTSAL----D--PEMINEVLDVMVELANEGMTMMVV 192
                 667777777777....4..778999999999988887777776 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.8e-05      0.03      44      80 ..      24      61 ..      13     112 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.8e-05
   IstB_IS21 44 iekkenivllGpsGvGKshlaial.gveavraglsvlf 80
                ++k e +v++GpsG GKs l  ++ g e v++g  ++ 
  CTQ27068.1 24 VKKGEVVVVCGPSGSGKSTLIKTVnGLEPVQQGQIIVD 61
                78899*************99766547888888866554 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.8e-05     0.036      17     100 ..      25     109 ..      19     138 .. 0.81
   2 ?   -2.2   0.0       4.1   2.2e+03     122     162 ..     150     193 ..     140     207 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.8e-05
      ATPase  17 pegrvvlitGepGtGKtifalqFlikgaekygepgvfv..t.veepaedlrenakslGwdlekleeegklaiidasesaeesaeekd 100
                  +g+vv ++G +G+GK+++ ++  ++g+e +++  ++v  t v+ ++++l +  +++G+ ++++e   +l iid  + a+ +  ++d
  CTQ27068.1  25 KKGEVVVVCGPSGSGKSTLIKT--VNGLEPVQQGQIIVdgTvVNDKKTNLAKLRSHVGMVFQHFELFPHLSIIDNLTLAQVKVLNRD 109
                 5799***************995..9999998888888866336777799999999******************99887766554443 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.1
      ATPase 122 rvviDsitglayeekeav....aReilrqlvrvlkklgvTailvs 162
                 ++ +D+i+ l  e ++a+    + e l+ ++ +l++ g+T + v+
  CTQ27068.1 150 ALCMDPIAMLFDEPTSALdpemINEVLD-VMVELANEGMTMMVVT 193
                 5666666666444333330110333333.3333455566666655 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.15        77      20      47 ..      31      58 ..      13     117 .. 0.74
   2 ?   10.0   0.0   0.00045      0.24     531     582 ..     159     207 ..     152     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.15
      AAA_13 20 liYGwNGaGKTtLSrllrslelgetepk 47
                ++ G  G+GK+tL +  + le  ++ + 
  CTQ27068.1 31 VVCGPSGSGKSTLIKTVNGLEPVQQGQI 58
                667999*******999999965444333 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00045
      AAA_13 531 viDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkntk 582
                  +D P S LD ++++ v   + + +   ++   +++ TH + f ++v +++ 
  CTQ27068.1 159 LFDEPTSALDPEMINEVLDVMVELA---NEGMTMMVVTHEMGFARKVANRVI 207
                 68**********************9...888899*************99754 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.4   7.5e-05     0.039       2      39 ..      30      69 ..      29      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.5e-05
                EEEE--TTSSHHHHHHHH..HHHH...GGGEEEEEEEEE- CS
    NTPase_1  2 vfiTGppGvGKtTlvkkv..lellkssgvkvgGfyteevr 39
                v++ Gp+G+GK+Tl+k v  le +++ ++ v+G ++++ +
  CTQ27068.1 30 VVVCGPSGSGKSTLIKTVngLEPVQQGQIIVDGTVVNDKK 69
                789*************995557799999999999987765 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   8.1e-05     0.043       2      28 ..      29      55 ..      28      79 .. 0.74
   2 ?   -1.2   0.0       2.5   1.3e+03      98      98 ..     171     171 ..      98     211 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.1e-05
                EEEEEESTTCCHHHHHHHHHCT--SS- CS
        cobW  2 vtvltGflGsGKTtLlnhllenraglk 28
                v+v++G+ GsGK+tL++++   +  ++
  CTQ27068.1 29 VVVVCGPSGSGKSTLIKTVNGLEPVQQ 55
                799**************9874333333 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.5
                 H CS
        cobW  98 p 98 
                 +
  CTQ27068.1 171 M 171
                 2 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.3   7.2e-05     0.038       1      21 [.      30      50 ..      30     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.2e-05
      AAA_18  1 IlltGtpGvGKttlakeLskr 21
                ++++G++G+GK+tl k ++ +
  CTQ27068.1 30 VVVCGPSGSGKSTLIKTVNGL 50
                79************9988554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.3   4.7e-05     0.025      16      50 ..      26      59 ..      20     158 .. 0.82
   2 ?   -2.4   0.1       6.3   3.3e+03      73     107 ..     189     222 ..     172     233 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.7e-05
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaaggrvi 50
                +g  v+v+ Gp G+GK+t++k+++ +   ++g++i
  CTQ27068.1 26 KG-EVVVVCGPSGSGKSTLIKTVNGLEPVQQGQII 59
                34.599****************9887776654554 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.3
      AAA_30  73 iakllkrlkgrarlepgtllivDEagmvdtkqlaa 107
                 +  ++++++  ar  +++++  DE   v  ++ +a
  CTQ27068.1 189 MMVVTHEMG-FARKVANRVIFMDEGKIVEDADKEA 222
                 333333333.2333445666666666665555555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   9.6e-05     0.051      18      37 ..      26      45 ..       2      48 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 9.6e-05
      AAA_23 18 skgltlItGpNGaGKTTild 37
                +  +++++Gp G+GK+T++ 
  CTQ27068.1 26 KGEVVVVCGPSGSGKSTLIK 45
                34689*************95 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00011     0.058     125     160 ..      23      58 ..      15      86 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
       T2SSE 125 avrerglilvsGgTgsGKttllyallkeinksderi 160
                  v++  +++v G+ gsGK+tl+ ++    + ++ +i
  CTQ27068.1  23 EVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGQI 58 
                 67778899*************988765555554444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00018     0.096       4      22 ..      29      47 ..      26      61 .. 0.85
   2 ?   -1.6   0.0       3.6   1.9e+03     157     186 ..     169     210 ..     164     217 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00018
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 +++ Gpsg+GK+tl+k+ 
  CTQ27068.1 29 VVVVCGPSGSGKSTLIKTV 47
                789**************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.6
      AAA_24 157 anelkeevDlvlranlkred............kvgervlkts 186
                  + ++e +D+++++  +  +            kv  rv++ +
  CTQ27068.1 169 PEMINEVLDVMVELANEGMTmmvvthemgfarKVANRVIFMD 210
                 566777777777777765556666666666666666666655 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00014     0.076       7      32 ..      30      55 ..      27      97 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
                EEEEEBTTSSCCCCCCTTSSSS---- CS
      Septin  7 lmvvGesglGkttlintlfetdliee 32
                ++v+G sg Gk+tli+t+   + +++
  CTQ27068.1 30 VVVCGPSGSGKSTLIKTVNGLEPVQQ 55
                789**************876555554 PP

>> RNA12  RNA12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00015     0.082      19      85 ..      29      98 ..      21     115 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
       RNA12 19 FivvkGPrGSGkkeLvldrv...lkdrkk.vlvidCdelvkarndaelisa.aAsqlGYfPvFswlnsissl 85
                 +vv GP GSGk+ L+  ++   l+  ++ ++++d   + + +++ ++++  +      f +F++l+ i +l
  CTQ27068.1 29 VVVVCGPSGSGKSTLI--KTvngLEPVQQgQIIVDGTVVNDKKTNLAKLRShVGMVFQHFELFPHLSIIDNL 98
                599*************..440124444447899999999988877666654133444566777776666655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00032      0.17      25      60 ..      30      65 ..      24      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00032
  Mg_chelatase 25 lllvGppGsGKtmlakrlpsllpplseeealevaki 60
                  ++++Gp+GsGK+ l+k +++l p  + + +++ + +
    CTQ27068.1 30 VVVCGPSGSGKSTLIKTVNGLEPVQQGQIIVDGTVV 65
                  6889****************9998777766665555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00022      0.12      29      53 ..      23      47 ..      14      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00022
       AAA_7 29 llknkkpvllvGptGtGKtviikdl 53
                 +k++  v+++Gp+G+GK+++ik++
  CTQ27068.1 23 EVKKGEVVVVCGPSGSGKSTLIKTV 47
                5788999***************985 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.3     0.006       3.2      65      89 ..     156     180 ..     122     181 .. 0.80
   2 ?    0.4   0.0       1.5   7.9e+02      60      72 ..     200     212 ..     186     223 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.006
     SbcCD_C  65 rlvfLDEAFsklDeesiatllelle 89 
                   +++DE  s lD+e+i+++l+++ 
  CTQ27068.1 156 IAMLFDEPTSALDPEMINEVLDVMV 180
                 46899***************99885 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.5
     SbcCD_C  60 repalrlvfLDEA 72 
                 r+ a r++f+DE+
  CTQ27068.1 200 RKVANRVIFMDEG 212
                 5677899*****9 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00042      0.22       1      17 [.      30      46 ..      30      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00042
  RNA_helicase  1 iwlyGpsgeGKStlake 17
                  ++++Gpsg GKStl+k+
    CTQ27068.1 30 VVVCGPSGSGKSTLIKT 46
                  689***********998 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00047      0.25       1      20 [.      32      51 ..      32      61 .. 0.83
   2 ?   -1.4   0.0       3.1   1.6e+03     149     187 ..      92     128 ..      82     185 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00047
  ATP_bind_1  1 vvGpaGsGKttfvgalseil 20
                v+Gp GsGK+t++++++ + 
  CTQ27068.1 32 VCGPSGSGKSTLIKTVNGLE 51
                89************998665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.1
  ATP_bind_1 149 lsamlrlelPhvvvlnkfDllkeklekeleffedveals 187
                 ls++ +l l +v vln+    +  ++k l+ +e v    
  CTQ27068.1  92 LSIIDNLTLAQVKVLNRDKASA--RKKGLKLLERVGLAA 128
                 6666677777777777655533..555555555544444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00045      0.24      11      45 ..      22      56 ..      14      70 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00045
  Zeta_toxin 11 psqerPklillgGqpGAGKselaellkdelerqgn 45
                ++ ++  ++++ G +G+GKs+l++ ++     q++
  CTQ27068.1 22 TEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQG 56
                35588899***************998765444444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00062      0.33      31      49 ..      25      43 ..      22      46 .. 0.91
   2 ?   -2.4   0.0       5.7     3e+03     148     188 ..     153     194 ..     141     199 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00062
      AAA_25 31 pagelallaGapgtGKttl 49
                 +ge+++++G++g+GK+tl
  CTQ27068.1 25 KKGEVVVVCGPSGSGKSTL 43
                689***************9 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.7
      AAA_25 148 iDplsralgg.densnsdv.galvealeriarrtgaavllvhH 188
                  Dp++ +++   +  + ++ +++++ + ++ ++ g + ++v H
  CTQ27068.1 153 MDPIAMLFDEpTSALDPEMiNEVLDVMVEL-ANEGMTMMVVTH 194
                 555555444433333444446666666666.355666666666 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0011      0.55       2      34 ..      27      59 ..      26     102 .. 0.75
   2 ?   -0.6   0.0       2.5   1.3e+03      63      79 ..     202     218 ..     157     225 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0011
      AAA_14  2 rkilvitGaRrvGKTtllkqlikellvkkesil 34
                ++++v+ G+  +GK+tl+k++   + v++ +i+
  CTQ27068.1 27 GEVVVVCGPSGSGKSTLIKTVNGLEPVQQGQII 59
                5799**************988543336665555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.5
      AAA_14  63 ekktylflDEiqevpew 79 
                   ++++f+DE + v+++
  CTQ27068.1 202 VANRVIFMDEGKIVEDA 218
                 34678999997777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 1728.77
//
Query:       CTQ27069.1  [L=224]
Description: glutamate and aspartate transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-18   65.6  17.1    4.8e-18   65.6  17.1    1.6  2  BPD_transp_1   Binding-protein-dependent transport system inn
  ------ inclusion threshold ------
        2.6    8.4   9.2       0.61   10.4   5.1    2.1  2  Cytochrom_B_C  Cytochrome b(C-terminal)/b6/petD


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.14   1.3e+03     155     170 ..      13      28 ..       1      34 [. 0.36
   2 !   65.6  17.1   5.3e-22   4.8e-18       1     183 [.      34     223 ..      34     224 .] 0.92

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.14
  BPD_transp_1 155 nggvlalviavlllnl 170
                   + ++la+++++l +++
    CTQ27069.1  13 MPYLLAGLVITLKITV 28 
                   2233333333333322 PP

  == domain 2  score: 65.6 bits;  conditional E-value: 5.3e-22
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf.......vilsilghlilp.viillllsaapyvrlirraalrslpkdlvea 86 
                   gi++G l+a   l++  +l ++   +++v++s+P + +++ ++l++         ls  ++  l  +++++ ++ a+y   i+ra+++s+++++  a
    CTQ27069.1  34 GIVWGTLLAvmrLSSFMPLAWFAKSYVNVFRSIPLVMVLLWFYLIVpgflqnvLGLSPKTDIRLIsAMVAFSMFEAAYYSEIIRAGIQSISRGQSSA 130
                   899******998889999*****************9977776666688899874444444555555999999************************* PP

  BPD_transp_1  87 aralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   a+alG+++wq +r v+lP+a++ ++++l+ + + l+ +++l++ l     l +++ +a+ +   + +++ ++l+++ ++++++l+a +l+ +l +r+
    CTQ27069.1 131 ALALGMTHWQSMRLVILPQAFRAMVPLLLTQGIVLFQDTSLVYVLS----LADFFRTASTIGERDGTQVEMILFAGGVYFVISLSASLLVSWLKKRT 223
                   **********************************************....*******************************************9996 PP

>> Cytochrom_B_C  Cytochrome b(C-terminal)/b6/petD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   5.1   6.8e-05      0.61      29      98 ..      34     103 ..       9     112 .. 0.82
   2 ?   -0.7   0.1       0.2   1.8e+03      31      53 ..     200     222 ..     160     224 .] 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 6.8e-05
                    SHHHHHHHHHHHHHGGGCHHHH---SSSSSTT-.HHHHHHHHH.HHHHHHHHHHHHTS-SSCCHHHHHHHH CS
  Cytochrom_B_C  29 akllGvvamgaaivilfllpwldrskvksiryrkplakvllal.lvvsfvvLgylGvqppeevavllsqia 98 
                      ++G ++ ++ +  ++ l w+ +s v+ +r   pl  vll++ l+v  ++  +lG +p++++  + + +a
     CTQ27069.1  34 GIVWGTLLAVMRLSSFMPLAWFAKSYVNVFRSI-PLVMVLLWFyLIVPGFLQNVLGLSPKTDIRLISAMVA 103
                    5689****************************9.888888887467777777899****999776655544 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.2
                    HHHHHHHHHHHHGGGCHHHH--- CS
  Cytochrom_B_C  31 llGvvamgaaivilfllpwldrs 53 
                    ++G v +++++   +l+ wl+++
     CTQ27069.1 200 FAGGVYFVISLSASLLVSWLKKR 222
                    55667777777777777888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1820.07
//
Query:       CTQ27070.1  [L=246]
Description: glutamate and aspartate transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-26   91.5   6.0    5.3e-26   91.5   6.0    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.07   12.1   5.9       0.22   10.5   5.9    1.9  1  PTS_EIIC_2    Phosphotransferase system, EIIC
       0.96    9.9   6.5        2.6    8.6   0.5    2.8  3  DUF3975       Protein of unknown function (DUF3975)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   2.0      0.13   7.7e+02      45      70 ..      18      43 ..       7      55 .. 0.43
   2 !   91.5   6.0   8.8e-30   5.3e-26       5     184 ..      47     238 ..      43     239 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.13
  BPD_transp_1 45 ilsilghlilpviillllsaapyvrl 70
                  + ++lg+l+ +  i+++ls+ ++++ 
    CTQ27070.1 18 NTTYLGWLWSGFQITVALSISAWIIA 43
                  33444444444333333333333322 PP

  == domain 2  score: 91.5 bits;  conditional E-value: 8.8e-30
  BPD_transp_1   5 Gilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf.............vilsilghlilpviillllsaapyvrlirraalrslpkdlve 85 
                   G+l +   + +n++l+ + + ++++++ +P +v ++ ++lv+             + l+   + + + +++l l++a+ v+  +raa++slp+++++
    CTQ27070.1  47 GSLFGilrTVPNRFLSGIGTCYVELFRNVPLIVQFFTWYLVVpeflpenigmwfkSELDPNIQFFVSSMLCLGLFTAARVCEQVRAAIQSLPRGQKN 143
                   555555556************************999999999999******99998888888899999999************************** PP

  BPD_transp_1  86 aaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                   a +a+G++  q++r+v+lPna ++i++ +   +++l++++++++++g    l ++  +a    dys+ ++ ++ a+++a++ +n+v+++++ +++++
    CTQ27070.1 144 AGLAMGLTLPQTYRYVLLPNAYRVIVPPMTSEMMNLVKNSAIASTIG----LADMAAQAGKLLDYSAHAWESFTAITLAYVFINAVIMLIMYVVERK 236
                   ***********************************************....********************************************** PP

  BPD_transp_1 183 vr 184
                   vr
    CTQ27070.1 237 VR 238
                   98 PP

>> PTS_EIIC_2  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.9   3.7e-05      0.22     202     319 ..     125     238 ..      28     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.7e-05
  PTS_EIIC_2 202 caaqmvgfavaslkenklggllavglgtpklqvpnilknPiilippllasailGpvatlifklq.gtaasaGmGtaGLvgplaal...eaagasavlll 296
                  +++ v  a++sl+ ++ ++ la+gl  p +          +l+p++   ++  + + ++ +l  ++a+ + +G+a + ++ + l   +a ++++++++
  CTQ27070.1 125 RVCEQVRAAIQSLPRGQKNAGLAMGLTLPQTYRY-------VLLPNAYRVIVPPMTSEMM-NLVkNSAIASTIGLADMAAQAGKLldySAHAWESFTAI 215
                 5677777788888888888888888844433333.......5666666655555566666.7765999999***********99999899999****** PP

  PTS_EIIC_2 297 ilvlfvlPlvlalliskvfkklg 319
                 +l+++ + +v+ l+++ v +k++
  CTQ27070.1 216 TLAYVFINAVIMLIMYVVERKVR 238
                 ***************99988876 PP

>> DUF3975  Protein of unknown function (DUF3975)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.5   0.00043       2.6      12      50 ..      26      64 ..      18      81 .. 0.85
   2 ?    4.1   0.1     0.011        63      41      59 ..     168     187 ..     163     202 .. 0.81
   3 ?   -2.2   0.1      0.99   5.9e+03       9      21 ..     216     228 ..     208     236 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00043
     DUF3975 12 witlgivillqisfhiiewlfhkvvsiltflpnmtlemi 50
                w  + i + l is  ii +l   +  il  +pn  l  i
  CTQ27070.1 26 WSGFQITVALSISAWIIAFLVGSLFGILRTVPNRFLSGI 64
                556678999************************888665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.011
     DUF3975  41 flpnmtlemisivr.siias 59 
                 ++p mt em+ +v+ s ias
  CTQ27070.1 168 IVPPMTSEMMNLVKnSAIAS 187
                 6899*******997467776 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.99
     DUF3975   9 llawitlgivill 21 
                  la++ +  vi+l
  CTQ27070.1 216 TLAYVFINAVIML 228
                 3455555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1955.28
//
Query:       CTQ27071.1  [L=303]
Description: glutamate and aspartate transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-46  159.0   0.2    1.4e-46  158.7   0.2    1.1  1  SBP_bac_3  Bacterial extracellular solute-binding proteins, f
    0.00022   21.3   0.1       0.27   11.2   0.1    2.2  2  NMT1       NMT1/THI5 like
     0.0048   17.2   0.1       0.37   11.2   0.1    2.4  2  DUF3991    Protein of unknown function (DUF3991)


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7   0.2   2.4e-50   1.4e-46       1     224 [.      43     272 ..      43     273 .. 0.92

  Alignments for each domain:
  == domain 1  score: 158.7 bits;  conditional E-value: 2.4e-50
                 EEEEE-S-BTTTBEE-TTS-EESHHHH....HHHHHHHHCT-...EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvd....lakaiakrlgv...kvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvr 92 
                 ++vg ++++ Pfsy+d++++++G++ d    +++ai k+l+    +v+++pv+ +++ip l++g +D+ ++++t + eR+++ +Fs+ +f+ g++llv+
  CTQ27071.1  43 IVVGHRESSVPFSYYDNQQKVVGYSQDysnaIVDAIKKKLNKpdlQVKLIPVTSQNRIPLLQNGTFDFECGSTTNNLERQKQAAFSDTIFVVGTRLLVK 141
                 79*************************8888888899999765446777778*********************************************** PP

                 ETTSHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC...TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE.ECGGCECEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
   SBP_bac_3  93 kkdaskissiksladLkgkkvgvqagstaeellkeelkk...gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv.eeplsseey 187
                 k+       ik++ dLk+k v+v+ g+t+e ll + + +   +++i++ +++ + ++ L++gr+ a+++d++ la+  +k ++++  ++ + p s+e y
  CTQ27071.1 142 KGG-----PIKDFPDLKDKAVVVTSGTTSEILLHKLNDEkkmNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWEIvGTPQSKEAY 235
                 865.....366666****************88777555577799999****************************999999999999988********* PP

                 EEEEETTTHHHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 188 aiavrkgdseLrkainkalaelkadgtlakisekWfg 224
                 ++++rk+d+++++ +++++a+ +++g+ +k  +kWf+
  CTQ27071.1 236 GCMLRKDDPTFKALVDETVAQAQTSGEAEKWFDKWFK 272
                 ************************************7 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0005         3      94     152 ..      62     118 ..      48     134 .. 0.86
   2 !   11.2   0.1   4.5e-05      0.27      76     139 ..     137     198 ..     131     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0005
                 SEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTTH CS
        NMT1  94 krigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaaiggyenwe 152
                 k +gy++ + ++a+++a+ +k +    +v+l++v+  + ++ l +g++D+  g  +n +
  CTQ27071.1  62 KVVGYSQ-DYSNAIVDAIKKKLNKPDLQVKLIPVTSQNRIPLLQNGTFDFECGSTTN-N 118
                 8999999.8*********999999999*************99*********988877.3 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.5e-05
                 EEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCT CS
        NMT1  76 glivlkdsgikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltg 139
                  l+v+k+++ik++ DLk k + ++ +  +++ll++l  ++ +++  + + +  g+s+   l +g
  CTQ27071.1 137 RLLVKKGGPIKDFPDLKDKAVVVTSGTTSEILLHKLNDEKKMNMRIISAKDH-GDSF-RTLESG 198
                 678999*******************9**********9999998877776665.4444.355555 PP

>> DUF3991  Protein of unknown function (DUF3991)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   6.2e-05      0.37      12      46 ..      32      67 ..      30      73 .. 0.85
   2 ?    3.6   0.0     0.014        84       9      55 ..     178     233 ..     172     255 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.2e-05
     DUF3991 12 eiiaefaekkllyedeyg.NavFvykDengkvvgae 46
                +++ + a+++++  + ++ ++ F+y+D ++kvvg+ 
  CTQ27071.1 32 NTLDKIAKNGVIVVGHREsSVPFSYYDNQQKVVGYS 67
                68899999****9988872566************96 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.014
     DUF3991   9 isreiiaefaekkllyedeygNav.FvykD........engkvvgaekrgttyekp 55 
                  +  ii++  + +  ++ e g av F++ D        ++ k+  +e+ gt++ k+
  CTQ27071.1 178 MNMRIISAKDHGDSFRTLESGRAVaFMMDDallageraKAKKPDNWEIVGTPQSKE 233
                 555667777777777777777666366666999999999***********966554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2206.68
//
Query:       CTQ27072.1  [L=512]
Description: apolipoprotein N-acyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-39  136.1   0.0    1.7e-39  135.7   0.0    1.2  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   0.0   9.7e-44   1.7e-39       2     252 ..     224     475 ..     223     483 .. 0.95

  Alignments for each domain:
  == domain 1  score: 135.7 bits;  conditional E-value: 9.7e-44
                   EEEEEBB-...STTHHHHHHHHHHHHHHHHHHT..TESEEEEETTTTTBSSSHHHHHHHHBHSSSHHHHHHHHHHHHHTEEEEEEEEEEEC.CTTEE CS
  CN_hydrolase   2 vAvvQlpq...kaadleanlqklleliaeAark..gadLivlPElfitgykeeahfleaAeaglgetlallaalarkngiavviglierel.tngkl 92 
                   v +vQ  +    ++d ++++ +l++++a +  +    +Li++PE +i+  + e +          ++l  + +l+r  +  +++g+   +l +++++
    CTQ27072.1 224 VSLVQGDIpqaMKWDEKQLVNTLKTYLALTQPHigHSQLIIWPESAIP--DLEINQQ--------QFLSMMDDLLRAKDSSLITGIVDARLnKQNRY 310
                   7889988777977****************999999*************..7788877........5***********************99****** PP

                   EEEEEEEEEETTSEE....EEEEE-SS--E.ECTTSCECCGHHTSCS.........-SSS-EEEETTE....EEEEEEGGGGGSHHHHHHHHHTT-S CS
  CN_hydrolase  93 qayntavlldldgkl....vgkyrKlhLfp.geprpptaverelfep.........gdgipvfdtpvg....kiGaaiCyeigfpellralalkgae 171
                   ++ynt+++l +d+ +    + +y+K+hL+p ge+ p ++++r+l +          ++  p++++++     k+ aaiCyei+ +e++r + + +++
    CTQ27072.1 311 DTYNTIITLGKDNPYrydsTNRYNKNHLVPfGEFVPLESILRPLAPFfdlpmssfsRG--PYVQPQLMahnlKLTAAICYEIILGEQVRDNFRPDTD 405
                   ***********************************************99999999877..89999999***************************** PP

                   EEEEBH.GCCCTCHHHHHHHHHHHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEE CS
  CN_hydrolase 172 ilvnlserapvpksmgppqwellgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaeid 252
                   +l+++s++a+++ks+gp+q+++++r+rale+  ++++++++g+           +a+i+p+G+i    ++++++vl++++ 
    CTQ27072.1 406 FLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGI-----------TAVIGPRGEIQKMIPQFTREVLTTTVT 475
                   *******************************************...........************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3757.71
//
Query:       CTQ27073.1  [L=315]
Description: putative protein involved in divalent ion export [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-23   82.4   0.4      6e-23   80.6   0.0    2.1  2  CorC_HlyC  Transporter associated domain
    1.3e-15   57.6   2.0      8e-08   32.6   0.2    2.6  2  CBS        CBS domain


Domain annotation for each model (and alignments):
>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.42   3.8e+03      10      30 ..     198     218 ..     197     222 .. 0.75
   2 !   80.6   0.0   6.7e-27     6e-23       2      79 ..     229     304 ..     228     306 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.42
                 EETT-BHHHHHHHHTSTTHHC CS
   CorC_HlyC  10 vdGslpldeleeelglelpee 30 
                 v+G ++++++ e++  e+++e
  CTQ27073.1 198 VSGLVTIEDILELIVGEIEDE 218
                 789999999888777677664 PP

  == domain 2  score: 80.6 bits;  conditional E-value: 6.7e-27
                 EECTTEEEEETT-BHHHHHHHHTSTTHHCT-SBHHHHHHHHH-S---TT-EEEEEETTEEEEEEEEETTCEEEEEEEE CS
   CorC_HlyC   2 eldegsylvdGslpldeleeelglelpeedyeTlgGlllellgriPkegesvevdleglrftVlemdgrrIkkvrvek 79 
                 +l+ ++++v + ++++++++++++++++e+++T+gGl+++++g++P++ges+++d  g++f+V  +d rrI +v v++
  CTQ27073.1 229 QLSRHTWTVRALASIEDFNDAFDTHFSDEEVDTIGGLVMQAFGHLPARGESIDID--GYQFKVAMADSRRIIQVHVKL 304
                 6889**********************************************88888..******************986 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.2   8.9e-12     8e-08       1      53 [.      92     147 ..      92     151 .. 0.86
   2 !   24.1   0.1     4e-09   3.6e-05       7      56 ..     163     212 ..     153     213 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 8.9e-12
                 HHHH..SBSSCEEEETTSBHHHHHHHHHHHTSSEEEEE.ETTTBEEEEEEHHHHHH CS
         CBS   1 Vgdi..mtrdvvtvppdttleealelmrekgvsrlPVV.dedgklvGivtlrDllr 53 
                 V+di  ++++++t++ ++tl e+l+ ++e+++sr+PV+ ++ +++ Gi+  +Dll 
  CTQ27073.1  92 VRDImiPRSQMITLKRNQTLDECLDVIIESAHSRFPVIsEDKDHIEGILMAKDLLP 147
                 78885566799***************99**********755557**********95 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 4e-09
                 SSCEEEETTSBHHHHHHHHHHHTSS.EEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvs.rlPVVdedgklvGivtlrDllrall 56 
                 r+ v+vp++  +   l+++r+ +++ ++ V+de g + G+vt +D+l++++
  CTQ27073.1 163 RPAVVVPESKRVDRMLKEFRSQRYHmAI-VIDEFGGVSGLVTIEDILELIV 212
                 56788899999********999997444.88*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2512.94
//
Query:       CTQ27074.1  [L=157]
Description: putative metal-dependent hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-38  131.3   0.0    2.1e-38  131.0   0.0    1.0  1  UPF0054   Uncharacterized protein family UPF0054


Domain annotation for each model (and alignments):
>> UPF0054  Uncharacterized protein family UPF0054
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   0.0   1.1e-42   2.1e-38       8     126 ..      21     142 ..      15     144 .. 0.92

  Alignments for each domain:
  == domain 1  score: 131.0 bits;  conditional E-value: 1.1e-42
     UPF0054   8 eklikkvleeal..kkekle.evsvllvdneeirelnkeyrgkdkpTDVLSFpleeeeeeee..lGDivisvekakeqaeeyghslerelafllvHgll 101
                 e+l+++++++++  +  + e e+++ lvd +e +eln +yrgkdkpT+VLSFp+e     e   lGD++i+ ++++++a+e+g+ le ++a+++vHg l
  CTQ27074.1  21 EALFQRWVDAVIppF--QEEsELTIRLVDVAESHELNLTYRGKDKPTNVLSFPFEAPPGIEMplLGDLIICRQVVEQEASEQGKPLEAHWAHMVVHGSL 117
                 679999999999542..4445***********************************99983367*********************************** PP

     UPF0054 102 HllGYDHeeeeeekeMeekeeeile 126
                 HllGYDH+e++e++eMe++e+ei+ 
  CTQ27074.1 118 HLLGYDHIEDDEAEEMEGLETEIML 142
                 ***********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1168.99
//
Query:       CTQ27075.1  [L=348]
Description: putative enzyme with nucleoside triphosphate hydrolase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-95  318.4   0.0    2.1e-95  318.0   0.0    1.1  1  PhoH           PhoH-like protein
    1.7e-09   37.7   0.0    3.1e-09   36.8   0.0    1.5  1  AAA_30         AAA domain
    7.5e-05   23.1   0.1    0.00033   21.0   0.1    2.0  1  AAA_19         AAA domain
     0.0015   18.3   0.0     0.0052   16.5   0.0    1.9  2  IstB_IS21      IstB-like ATP binding protein
     0.0017   18.2   0.0     0.0041   16.9   0.0    1.8  1  DEAD           DEAD/DEAH box helicase
     0.0061   16.8   0.0      0.018   15.3   0.0    1.8  1  AAA_22         AAA domain
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.023   14.3   0.0    1.6  1  AAA_25         AAA domain
      0.054   13.1   0.0        6.1    6.4   0.0    2.4  2  Zot            Zonular occludens toxin (Zot)
      0.096   12.7   0.1        3.7    7.6   0.0    2.7  3  Receptor_IA-2  Protein-tyrosine phosphatase receptor IA-2


Domain annotation for each model (and alignments):
>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.0   0.0   1.1e-98   2.1e-95       2     205 .]     118     321 ..     117     321 .. 0.99

  Alignments for each domain:
  == domain 1  score: 318.0 bits;  conditional E-value: 1.1e-98
                 ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHHHH CS
        PhoH   2 ikpktkeQkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpaveageelGflpgdleekvdpylrplydaLkdllgaekvekll 100
                 ikp+t +Q++y+ ++ ++di+f++GpaGtGKtylava+av+al++++++ri+ltrpaveage+lGflpgdl++kvdpylrplydaL ++lg ekvekl+
  CTQ27075.1 118 IKPRTPNQAQYIANILDHDITFGVGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVEKLI 216
                 9************************************************************************************************** PP

                 HTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------------THHHHHHTTT-TTEEEEE--GGG----HHHHH CS
        PhoH 101 ekgkievaplaymRGrTlndafvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlpkgkksGlaealevlknvegieivelkkkdvvRhplvkk 199
                 e+++ievaplaymRGrTlndaf+ilDE+Qntt eqmkmfltR+G+nsk+v+tGd+tqidlp+++ksGl++a+evl +v++i++  ++++dvvRhp+v++
  CTQ27075.1 217 ERNVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNSKAVITGDITQIDLPRSTKSGLRHAIEVLAEVDEISFNFFHSEDVVRHPVVAR 315
                 *************************************************************************************************** PP

                 HHHHH- CS
        PhoH 200 ivkaye 205
                 iv+aye
  CTQ27075.1 316 IVNAYE 321
                 ****97 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.5e-12   3.1e-09       4     128 ..     123     274 ..     121     340 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.5e-12
      AAA_30   4 aeQaaavealltsgdrvavltGpAGtGKtta.lkalreaweaa.ggrviglAptgkaAkvLaeelgieastiakllkrlk................... 81 
                 ++Qa+ ++++l ++  +++ +GpAGtGKt++ ++a+++a+e++  +r+++  p  +a ++L+   g  ++ ++ +l+ l                    
  CTQ27075.1 123 PNQAQYIANILDHD--ITFGVGPAGTGKTYLaVAAAVDALERQeIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYdalfemlgfekvekliern 219
                 68********9888..9************962566699999995599999999999999***6666666666666655555666666666666666666 PP

      AAA_30  82 .........grarlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQl 128
                           r r  ++  +i DE+  + ++q++ +l+++   + k ++ GD  Q 
  CTQ27075.1 220 vievaplayMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGF-NSKAVITGDITQI 274
                 6*****998334555669**********************99.99*******9996 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   1.6e-07   0.00033       7     141 ..     132     274 ..     125     276 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.6e-07
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.........atTiHrlalldfddlltealelle.... 92 
                  l +++ + ++++GtGKT++ +++   ++e++++  ++ill  ++  A ++l      l ++            +  l++ ++++l++  +  +e    
  CTQ27075.1 132 ILDHDITFGVGPAGTGKTYLAVAAAVDALERQEI--RRILLTRPAVEAGEKLGFLPGDLSQKvdpylrplyDALFEMLGFEKVEKLIERNV--IEvapl 226
                 56677777789********988776666666645..9****99999999999876655666677788778522333444444444442222..224566 PP

      AAA_19  93 eaeeekklqeeellivDEfqdvd.elqyrLlkallgekkklllvGDpdQl 141
                    + ++l + + +i DE+q+++ e+++ +l ++  ++k  ++ GD+ Q 
  CTQ27075.1 227 AYMRGRTL-NDAFIILDESQNTTiEQMKMFLTRIGFNSK-AVITGDITQI 274
                 44666788.7889**********8888888888885555.8999**9995 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.6e-06    0.0052      46      74 ..     134     162 ..     107     175 .. 0.80
   2 ?   -2.4   0.0       1.7   3.3e+03      18      45 ..     203     230 ..     199     251 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.6e-06
   IstB_IS21  46 kkenivllGpsGvGKshlaialgveavra 74 
                 +++    +Gp+G+GK++la+a +v+a ++
  CTQ27075.1 134 DHDITFGVGPAGTGKTYLAVAAAVDALER 162
                 55556669*****************9985 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
   IstB_IS21  18 tledidfraarsldkrkvkeLatlsfie 45 
                  +e + f++ ++l +r+v e+a l++++
  CTQ27075.1 203 LFEMLGFEKVEKLIERNVIEVAPLAYMR 230
                 5666777777778888887777777765 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.1e-06    0.0041       1      55 [.     122     173 ..     122     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.1e-06
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkaliveP 55 
                 t+ Qa+ i +il+ +  ++ ++ G+GKT  ++ ++++++   ++++  ++l+  P
  CTQ27075.1 122 TPNQAQYIANILDHDITFGVGPAGTGKTYLAVAAAVDAL---ERQEIRRILLTRP 173
                 789*********999999******************999...3455556666555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   8.9e-06     0.018      11     112 ..     141     255 ..     134     274 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.9e-06
      AAA_22  11 tGesGtGKTtllrrlleqldeeakaee...........erpevvfvtlpsst..sskdllrellralglelka..erlsseellealeqalraraviel 94 
                 +G++GtGKT+l+   +  + e++++++           e+ +++  +l+++    ++ l+ +l++ lg e+ +   + +  e+  + +   r+  + ++
  CTQ27075.1 141 VGPAGTGKTYLAVAAAVDALERQEIRRilltrpaveagEKLGFLPGDLSQKVdpYLRPLYDALFEMLGFEKVEklIERNVIEVAPLAYMRGRTLND-AF 238
                 8**********99999999899999999**999999988888888888888877888899999999998888855445555555555555555555.** PP

      AAA_22  95 liiDEaqhlrseealeeL 112
                 +i+DE q+  + e+++ +
  CTQ27075.1 239 IILDESQNT-TIEQMKMF 255
                 ********8.65555444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.1e-05     0.023      15      58 ..     118     160 ..     103     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.1e-05
      AAA_25  15 laapppprrwlvkgllpagelallaGapgtGKttlaldlalava 58 
                 ++ + p + +++ ++l  ++++  +G+ gtGKt la+  a++ +
  CTQ27075.1 118 IKPRTPNQAQYIANIL-DHDITFGVGPAGTGKTYLAVAAAVDAL 160
                 56689999999****8.6**********************9877 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0031       6.1       2      27 ..     137     161 ..     136     176 .. 0.74
   2 ?    4.1   0.0     0.016        32      73      92 ..     230     247 ..     200     261 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0031
         Zot   2 islvtGapGsgKtsgavkkdllpalk 27 
                 i +  G+ G+gKt+ av   +++al 
  CTQ27075.1 137 ITFGVGPAGTGKTYLAVAA-AVDALE 161
                 67889************99.556655 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.016
         Zot  73 akwatidkgallviDEcqei 92 
                 + +    ++a++++DE q++
  CTQ27075.1 230 RGRTL--NDAFIILDESQNT 247
                 33333..9********9976 PP

>> Receptor_IA-2  Protein-tyrosine phosphatase receptor IA-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.8   5.5e+03      69      81 ..      28      40 ..      25      42 .. 0.77
   2 ?    1.7   0.0      0.12   2.5e+02      40      73 ..     131     165 ..     124     171 .. 0.85
   3 ?    7.6   0.0    0.0018       3.7      13      67 ..     278     333 ..     269     346 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.8
  Receptor_IA-2 69 iKdkLeketglki 81
                   + ++Le+++g++i
     CTQ27075.1 28 NIKQLERRLGIEI 40
                   5578999999988 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.12
  Receptor_IA-2  40 rVlgpavtFkvesneknltaadVakkavd.iKdkL 73 
                    ++l +++tF v +   ++t   Va ++++ +++++
     CTQ27075.1 131 NILDHDITFGVGPAGTGKTYLAVAAAVDAlERQEI 165
                    68899*******************99988556665 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0018
  Receptor_IA-2  13 lswekGk.elleklaellklqkssFsdirVlgpavtFkvesneknltaadVakkav 67 
                     s+++G  + +e lae+ +++ + F   +V+++ v  ++ +  + ++aad  +ka+
     CTQ27075.1 278 RSTKSGLrHAIEVLAEVDEISFNFFHSEDVVRHPVVARIVNAYEAWEAADQKRKAE 333
                    5677775268999*************************************988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2533.91
//
Query:       CTQ27076.1  [L=474]
Description: isopentenyl-adenosine A37 tRNA methylthiolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-29  100.9   0.0    5.7e-29  100.1   0.0    1.4  1  UPF0004      Uncharacterized protein family UPF0004
    5.3e-28   98.5   0.0    8.2e-28   97.9   0.0    1.3  1  Radical_SAM  Radical SAM superfamily
    1.3e-18   66.7   0.6    3.1e-18   65.5   0.6    1.7  1  TRAM         TRAM domain
  ------ inclusion threshold ------
      0.012   15.7   0.5      0.041   14.1   0.5    1.9  1  TRAM_2       TRAM domain
      0.018   15.1   0.0       0.59   10.2   0.0    2.9  3  B12-binding  B12 binding domain


Domain annotation for each model (and alignments):
>> UPF0004  Uncharacterized protein family UPF0004
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.0   1.6e-32   5.7e-29       1      98 []       4     104 ..       4     104 .. 0.96

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 1.6e-32
                 XEEEE--S-CCCCHHHHHHHHHTTTS.SS----SSS--SEEEEEE--SSSSHHHHTHHHHHHHHTTS..T.--EEEEEEHHHHS-HHHHHHH-TTS-EE CS
     UPF0004   1 kvaietlGCqmNevdseelaslLkke.gyelvedeeeAdvvlvnTCavrekaekkviqalrelkalk..kpekkvvvlGCmaqrekeellkeepevdlv 96 
                 k++i+t+GCqmNe+ds+++a+lL++  gy+l+e +eeAdv+l+nTC++reka++kv+++l+++k lk  +p+ +++v GC+a++e++++ +++++vd++
  CTQ27076.1   4 KLHIKTWGCQMNEYDSSKMADLLDAThGYQLTEVAEEADVLLLNTCSIREKAQEKVFHQLGRWKLLKekNPDLIIGVGGCVASQEGDHIRQRAHYVDII 102
                 689********************8755*************************************99976799*************************** PP

                 E- CS
     UPF0004  97 lg 98 
                 +g
  CTQ27076.1 103 FG 104
                 98 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   2.3e-31   8.2e-28       1     167 []     151     325 ..     151     325 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 2.3e-31
                  EEEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS.........TTHHHHHHHHHHTCCCTEEEEEEECSSCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggeplly.........pdfvellerlaklavpgiritvetngtlp 89 
                  v++++gCn  C++C +p+   ++g + s++ ++il e+ +l a +gv+ev l+g++++++           f++ll+  a+++    ri+++t+++  
   CTQ27076.1 151 VSIMEGCNKYCTYCVVPY---TRGEEVSRPCDDILFEIAQL-AAQGVREVNLLGQNVNAWrgenydgttGSFADLLRLVAAID-GIDRIRFTTSHPIE 243
                  689**************9...7*******************.8999**********************988888888888886.999********995 PP

                  G.HHHHHHHHHTT..-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET...EEEEEEEBTTTSHHHHHHHHHHH CS
                  x.xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  90 d.eeklerllelg..vdrvslgleaaddekvlklmnrghtfeevlealeklreagikr...vvdrivglpGendeeleellell 167
                    +++++  ++ +  v  ++l++++++d+ vl+lm+r+ht  e+++ ++klrea  ++   ++d+ivg+pGe+ e++e++++l+
   CTQ27076.1 244 FtDDIIDVYRDTPelVSFLHLPVQSGSDR-VLNLMGRTHTALEYKAIIRKLREA-RPDiqiSSDFIVGFPGETTEDFEKTMKLI 325
                  59***************************.************************.677899********************986 PP

>> TRAM  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.6   8.6e-22   3.1e-18       1      62 []     378     440 ..     378     440 .. 0.96

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 8.6e-22
                 XXXXXXEEEEEEEEE-..TTSEEEEEET.TEEEEETT--T...TEEEEEEEEEE-SSEEEEEEE CS
        TRAM   1 rsyvGstqeVlvegls.ksegegiGrtdngkvvfvpgdlpg.IGdfVeVkItkvkrqyLrGell 62 
                 r++ G++q++lveg s k+ +e+ Grt+n++vv+++g+ p  +G+fV+V+I +v+ ++LrG+++
  CTQ27076.1 378 RRMLGTVQRILVEGTSrKNIMELSGRTENNRVVNFEGT-PDlVGKFVDVEIVDVYTNSLRGKIV 440
                 6899*********************************5.8889******************987 PP

>> TRAM_2  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.5   1.1e-05     0.041       2      64 .]     382     440 ..     381     440 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
                 TSEEEEEEEE...EETTEEEEEETTS-TTTS--EEEES---T...T-EEEEEEEEEETTEEEEEE- CS
      TRAM_2   2 Gktvevlvdg...eeeglyvGRsyadAPEvDgevyvtgaeklskvGdfvkvkItdadeyDLiGevv 64 
                 G++ ++lv+g   ++ + + GR++ +      +v ++g+ +l  vG+fv+v+I+d++   L G++v
  CTQ27076.1 382 GTVQRILVEGtsrKNIMELSGRTENN-----RVVNFEGTPDL--VGKFVDVEIVDVYTNSLRGKIV 440
                 67777777776443344577777655.....78999987775..5******************998 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00016      0.59      51     114 ..      40     107 ..      34     111 .. 0.68
   2 ?   -0.2   0.0      0.27   9.9e+02      23      52 ..     187     231 ..     182     296 .. 0.71
   3 ?    0.3   0.0       0.2     7e+02      41      55 ..     287     302 ..     259     336 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00016
  B12-binding  51 kpdvvglSalltsqleavkelvel......lkrirprvkvvvGGahpsldpeetleaklgiddvvvgege 114
                  ++dv++l + +  +  a +++ ++      lk+++p++++ vGG ++s   + + +   + +d+++g  +
   CTQ27076.1  40 EADVLLLNTCSIRE-KAQEKVFHQlgrwklLKEKNPDLIIGVGGCVASQEGDHIRQR-AHYVDIIFGPQT 107
                  56666665523222.2333333333556779**************999999997765.555888999865 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.27
  B12-binding  23 alrdagf.eVqllganven.............edivaairae.kp 52 
                   l ++g+ eV llg nv++             +d+++ ++a    
   CTQ27076.1 187 QLAAQGVrEVNLLGQNVNAwrgenydgttgsfADLLRLVAAIdGI 231
                  344556558889999998877777777777776666666665444 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.2
  B12-binding  41 edivaairaekpdv.v 55 
                  ++i++++r+ +pd+ +
   CTQ27076.1 287 KAIIRKLREARPDIqI 302
                  5667777777777653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3470.27
//
Query:       CTQ27077.1  [L=391]
Description: 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-37  128.6   0.2    4.4e-37  128.1   0.2    1.1  1  FAD_binding_3   FAD binding domain
    3.3e-08   33.0   7.6    1.1e-06   28.0   3.7    2.6  2  Lycopene_cycl   Lycopene cyclase protein
      1e-06   28.6   8.3      5e-06   26.3   1.3    2.6  2  DAO             FAD dependent oxidoreductase
    2.1e-06   27.0   0.0    7.3e-06   25.2   0.0    1.8  2  SE              Squalene epoxidase
      6e-05   22.4   0.7       0.01   15.1   0.2    2.1  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    7.3e-05   22.9   0.1    0.00021   21.5   0.1    1.8  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00011   21.2   5.8     0.0023   16.9   0.1    2.5  2  Trp_halogenase  Tryptophan halogenase
     0.0096   15.8   0.3      0.016   15.1   0.3    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
  ------ inclusion threshold ------
      0.023   15.3   0.1      0.042   14.4   0.1    1.4  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
      0.061   12.6   0.1       0.58    9.3   0.0    2.0  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
       0.07   12.8   0.1       0.12   12.0   0.1    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
       0.12   11.6   0.6       0.18   11.0   0.2    1.5  2  Thi4            Thi4 family
       0.15   11.7   1.0       0.24   10.9   1.0    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.16   12.5   0.1       0.36   11.4   0.1    1.6  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
       0.17   10.6   3.8        1.6    7.3   1.3    2.2  2  HI0933_like     HI0933-like protein
        0.2   12.1   0.0       0.35   11.3   0.0    1.5  1  NAD_binding_7   Putative NAD(P)-binding
       0.21   10.7   9.7      0.042   12.9   5.7    1.9  2  FAD_binding_2   FAD binding domain
       0.29   11.1   2.2        2.6    8.0   2.2    2.2  1  NAD_binding_9   FAD-NAD(P)-binding
        6.4    6.0   6.8        5.1    6.3   3.2    2.0  2  FAD_oxidored    FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1   0.2   4.7e-40   4.4e-37       2     340 ..       6     340 ..       5     344 .. 0.82

  Alignments for each domain:
  == domain 1  score: 128.1 bits;  conditional E-value: 4.7e-40
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS......S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC..CEEEEE CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp......radglnqrtmellrqlGledrilaegapnelmgealynelsdt..pkarad 89 
                    tdV+IVG+G +G  lal L+++G  v+++ek +  + +p      r + ++  ++ ll++lG++d i+a+ +      e+++ e   +    a+++
     CTQ27077.1   6 TDVAIVGGGMVGGALALGLAQQGFTVTVLEKAAPPAFYPasapdvRISAISAASVGLLKSLGVWDAIRAMRVHAYRRLETWEWESAHVafDAAELK 101
                    89*****************************9988777766778899************************7666666666666233333334444 PP

                    HHCHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEE CS
  FAD_binding_3  90 lelesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyea 185
                    l  e +++    + q+ l ++L++h   +++++r + e++++++ e++   +++  ++ge  t++a+ ++GaDG++S+vr+ +gi +++ +     
     CTQ27077.1 102 LP-ELGYMVENKVLQWGLWQALAAH---EAVTLRVGSELKTMQRGETQ---TALHLREGE--TIHARLVIGADGANSQVREMAGIGVHAWQYQQSC 188
                    44.5777777778888888888888...66999999999966555544...444444444..6**************************9988888 PP

                    EEEEEEEEC-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGS.CCCHHHHHHHHHHHHHHTTSSCEEEEEEEEEEEEEEEEESS CS
  FAD_binding_3 186 gvldvlfdadlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeer.sekfteeevkarlreivgektldveieevsawtvaqrvaek 280
                     +++v  ++d      ++++ + ++s+  +++Pl +   ++  +v ++a+++ r  + +t +++ +++ +++     +v ++ + a+++ +r a +
     CTQ27077.1 189 MLISVECADDPG----DSTWQQFTPSGPRAFLPLFD---HWASLVWYDAPARIRqLQSMTMAQLQQEIASHFPARLGRVTPQAAGAFPLTRRHALQ 277
                    888888888666....5799999999999*****99...44444444555444448899************************************* PP

                    SEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHH...TTSS-GGGGHHHHHHHHH CS
  FAD_binding_3 281 yrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavl...kGeAkeelLdtYeeerra 340
                    y +  + l+GDAaH+  P +GqG+N++ +D+  L   La++    + +A+  +L+ Y+++rra
     CTQ27077.1 278 YVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALLEILAEARgrgEDWASLPVLKRYQARRRA 340
                    ***************************************974221346777789***999986 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   3.7   1.1e-09   1.1e-06       1     146 [.       7     172 ..       7     203 .. 0.85
   2 !    5.6   0.1    0.0075       7.1     214     328 ..     242     353 ..     232     361 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.1e-09
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsllfpnnyvWsdefedlga......................leecvehsWsgtivylddgkk 74 
                    Dv+++G+G  g +lA  l  a++g  v+++e ++ + f +        ++++a                      + ++ +  W+ + v +d+ + 
     CTQ27077.1   7 DVAIVGGGMVGGALALGL--AQQGFTVTVLEKAAPPAFYPASAPDVRISAISAasvgllkslgvwdairamrvhaYRRLETWEWESAHVAFDAAEL 100
                    9*****************..9999****999777666666665666666666666799************************************** PP

  Lycopene_cycl  75 illgraYgrvsskrlkeellerlv.engvklleakvesveeeeageslvvleggrkirarlvvdarglaslkk 146
                    +l ++ Y +v+ k l+  l + l+ +++v+l+ +   + ++  ++++   l +g++i+arlv+ a g+ s+ +
     CTQ27077.1 101 KLPELGY-MVENKVLQWGLWQALAaHEAVTLRVGSELKTMQRGETQTALHLREGETIHARLVIGADGANSQVR 172
                    ****999.8***************877788777777777777777**********************888773 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0075
  Lycopene_cycl 214 adalkkrlaaylralglkvkevveeEqgviPvtlggslprleqkvlaiGaaaglvhPaTGYsvarslaeapllasaiaaalresslsarawatlwp 309
                    + +l++ +a+       +  +v  +  g  P+t    l+ +++  + +G aa  +hP  G  v    +  + l + +a+a ++ +  a+ +  +  
     CTQ27077.1 242 MAQLQQEIASHFP---ARLGRVTPQAAGAFPLTRRHALQYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALLEILAEARGRGEDWASLPVLKRY 334
                    5555555544333...345577788889999999999999999999*************************9999999888876555666666666 PP

  Lycopene_cycl 310 rerkrqreffrllglalll 328
                    ++r+r  +f    g++l+ 
     CTQ27077.1 335 QARRRADNFIMQSGMDLFY 353
                    6666666666667777776 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   1.3   5.3e-09     5e-06       1      33 [.       7      41 ..       7      47 .. 0.93
   2 ?    5.3   0.7     0.013        12     135     321 ..     100     281 ..      64     305 .. 0.57

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 5.3e-09
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33
                dv+i+GGG++G + A+ La++g  Vt+lek+  ++
  CTQ27077.1  7 DVAIVGGGMVGGALALGLAQQGftVTVLEKAAPPA 41
                8*****************************97776 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.013
                 EEETTEEEE.EHHHHHHHHHHH.HHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHHHH.HTTCTTTSEEEEEEEEEEEEEEC CS
         DAO 135 lfypdtgqv.dpakltaalara.aealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsdll.gllkeldlpispvrgqvlvlkpl 230
                 l  p+ g + +   l ++l +a a+  +v+++ g+e +  ++ +   + + +  +ge+ +a+ v+ a Ga s+ + ++++ + +   + + + + +  +
  CTQ27077.1 100 LKLPELGYMvENKVLQWGLWQAlAAHEAVTLRVGSELKTMQRGE-TQTAL-HLREGETIHARLVIGADGANSQ-VrEMAG-IGVHAWQYQQSCMLI-SV 193
                 55666555546666777788884455568999999998886533.33444.3333666345889999999985.323332.211222222222222.22 PP

                 CTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSEEETTCSS.TSCSHHHHHHHHHHHHHHSGG.GCGEEEEEEEEEE.E.TTSSEEEEE CS
         DAO 231 seklvspaailpvpetdddgrgvyvtprkdgrvlvGgtadeesgddd.pevdeedidellealrklfPq.lgdvlrkwaGlrp.l.pdglplige 321
                 +++ +  +  ++     ++++   ++p  d+   +     + +++ +  + ++   ++l ++++ +fP+ lg+v+ + aG  p + ++ l ++++
  CTQ27077.1 194 ECADDPGDSTWQ---QFTPSGPRAFLPLFDHWASLV----WYDAPARiRQLQSMTMAQLQQEIASHFPArLGRVTPQAAGAFPlTrRHALQYVQP 281
                 232211122222...444555555555443322222....2333444467788888889999999999977999999999999423444555544 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.8   1.7e+03      48      69 ..      32      53 ..      10      58 .. 0.82
   2 !   25.2   0.0   7.7e-09   7.3e-06     120     218 ..     271     369 ..     235     389 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.8
          SE 48 vilgkpspvllYqisstetRil 69
                 +l k +p   Y+ s+ ++Ri 
  CTQ27077.1 32 TVLEKAAPPAFYPASAPDVRIS 53
                5788999999999999999995 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 7.7e-09
          SE 120 kflpasknekkGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvleelksfyvkRkeldavvnvLsialyslfaadsdelkalrkg 218
                  +  a +  + Gl l+GDa    HPl g G+  +++D+  l ++l + +   ++ + l +lk +  +R++ ++++    + +y  f+ d   +++lr+ 
  CTQ27077.1 271 TRRHALQYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALLEILAEARGRGEDWASLPVLKRYQARRRADNFIMQSGMDLFYAGFSNDLAPVRMLRNI 369
                 55567788899*************************************9999999999************99999999999999999999999999875 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   1.1e-05      0.01       2      32 ..       7      36 ..       6      84 .. 0.87
   2 !    5.9   0.0     0.007       6.6     191     241 ..     120     171 ..      99     184 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvele 32
                 dv+++GgG+ G a+al laq+g+ vt++e +
   CTQ27077.1  7 DVAIVGGGMVGGALALGLAQQGFTVTVLE-K 36
                 89************************995.2 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.007
                  HHHHHT.TEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES- CS
                  xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 191 ealeke.GvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpst 241
                  +al ++  v++++g++ k++++ +++  ++l +ge+i a+lv+ a G   + 
   CTQ27077.1 120 QALAAHeAVTLRVGSELKTMQRGETQTALHLREGETIHARLVIGADGANSQV 171
                  55555558*************9998666***************999987654 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   2.2e-07   0.00021       1      29 [.      10      38 ..      10      48 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.2e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   IvG+G+ G ++A  La++gf v++lek+ 
     CTQ27077.1 10 IVGGGMVGGALALGLAQQGFTVTVLEKAA 38
                   9*************************985 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   1.9    0.0065       6.1       1      37 [.       7      40 ..       7      79 .. 0.89
   2 !   16.9   0.1   2.4e-06    0.0023     163     353 ..     122     318 ..      80     337 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0065
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeig 37
                    ++ ivGGG  G   A  la+++   ++vt++e+++ +
      CTQ27077.1  7 DVAIVGGGMVGGALALGLAQQG---FTVTVLEKAAPP 40
                    699********99999999999...99*****98755 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 2.4e-06
                     HHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG-IIIIIIT---EEE-TTT----EEEEEEEE--H---SSEEEEE-SSE CS
  Trp_halogenase 163 vaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfrgllieqaLktgfedwsdvLltdrAlavqveseelvepytrataekaG 257
                      a ++ vt + g   ++ ++  +  ++l+l +g+++ a+l+i + G ++ + e a   g++ w+ +    + + ++ve  + +   t      +G
      CTQ27077.1 122 LAAHEAVTLRVGSELKTMQR-GETQTALHLREGETIHARLVIGADGANSQVREMA-GIGVHAWQYQQ---SCMLISVECADDPGDSTWQQFTPSG 211
                     56666777666655444333.45558999************************99.77777776655...99999999999999999999999** PP

                     EEEEEEETTEEEEEEEE-TTTS-HHHHHHHHHHHCT--TTTS-.EEEE---EE...............ES-SEETTEEE-CCCTEE--CCCS-HH CS
  Trp_halogenase 258 WtWkiPLqhrlgnGyvyssahadddeAlaellaeldgkleaep.rkirfttGr...............rkqawvknvvalGlasgfvePlestsi 336
                      +   PL +   + +v+  a a   +   + +a+l+    +e  ++ + + Gr                 q+ ++++ ++G+a+  + Pl ++++
      CTQ27077.1 212 PRAFLPLFDHWAS-LVWYDAPARIRQLQSMTMAQLQ----QEIaSHFPARLGRvtpqaagafpltrrhALQYVQPGLALVGDAAHTIHPLAGQGV 301
                     ***********99.8988888833333333333333....222244455555555555666777766688999********************** PP

                     HHHHHHHHHHHHT--BT CS
  Trp_halogenase 337 hliqaalrrLlallpdk 353
                      l +++++ Ll++l++ 
      CTQ27077.1 302 NLGYRDVDALLEILAEA 318
                     **************986 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.3   1.7e-05     0.016       2      31 ..       8      37 ..       7      64 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.7e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S- CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdis 31
                va++G G++G  +a  +a++g++V++++ +
  CTQ27077.1  8 VAIVGGGMVGGALALGLAQQGFTVTVLEKA 37
                9*************************9874 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   4.5e-05     0.042       2      29 ..       8      32 ..       7      58 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.5e-05
                   EEEETTSHHHHHHHHHHHHTTS-GGCEE CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheiv 29
                   ++i+G+G +g ala+gl+++g     ++
     CTQ27077.1  8 VAIVGGGMVGGALALGLAQQG---FTVT 32
                   89*******************...5555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00062      0.58       2     197 ..      10      38 ..       2      98 .. 0.71
   2 ?    1.1   0.0       0.2   1.9e+02      90     272 ..     122     172 ..     107     190 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00062
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkgnignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelpik 99 
                  I+G+G  G a a+ l + g+ ++++lEk+                                                                     
   CTQ27077.1  10 IVGGGMVGGALALGLAQQGF-TVTVLEKA--------------------------------------------------------------------- 37 
                  55555555555555555555.45555554..................................................................... PP

  Pyr_redox_3 100 lfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgs 197
                                                                                                                   +
   CTQ27077.1  38 -------------------------------------------------------------------------------------------------A 38 
                  .................................................................................................3 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
  Pyr_redox_3  90 vaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkg 187
                  +a++                                                                                              
   CTQ27077.1 122 LAAH---------------------------------------------------------------------------------------------- 125
                  3344.............................................................................................. PP

  Pyr_redox_3 188 aeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdls 272
                                                       e++++   +e+k +++ e++  ++ ++g+++++   v+ a G +++++
   CTQ27077.1 126 -------------------------------------EAVTLRVGSELKTMQRGETQTALHLREGETIHA-RLVIGADGANSQVR 172
                  .....................................555555555555555555555555555555443.34444455544444 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00013      0.12       1      29 [.       8      36 ..       8      51 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
                EEEES-SHHHHHHHHHHHHHTHCEEEE-S CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilr 29
                +ai+G G +G+ la  La++g +vt++ +
  CTQ27077.1  8 VAIVGGGMVGGALALGLAQQGFTVTVLEK 36
                69***********************9866 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00019      0.18      15      50 ..       3      37 ..       1      41 [. 0.91
   2 ?   -4.2   0.0       8.5     8e+03     156     174 ..     155     173 ..     152     176 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
                HTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 15 yaesDvvivGaGssGLtaayylakkpdlkvailers 50
                + ++Dv+ivG+G  G + a  la++ ++ v++le+ 
  CTQ27077.1  3 IHVTDVAIVGGGMVGGALALGLAQQ-GFTVTVLEKA 37
                6789*********************.********85 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 8.5
                 EEEEEEEEE--GSSSTTTT CS
        Thi4 156 virakvvvdatGhdgeiva 174
                 +i+a++v+ a G ++++ +
  CTQ27077.1 155 TIHARLVIGADGANSQVRE 173
                 8999999999998887765 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.0   0.00026      0.24       3      29 ..       8      34 ..       6      38 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00026
                    EEEE--STTHHHHHHHHHHCTSEEEEE CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigv 29
                    ++++G G vG+  a+ la++g++v+++
      CTQ27077.1  8 VAIVGGGMVGGALALGLAQQGFTVTVL 34
                    89**********************987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00039      0.36       2      31 ..       8      37 ..       7      50 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00039
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                v++vGgG +g  lA  la+ g  Vtv+e +
  CTQ27077.1  8 VAIVGGGMVGGALALGLAQQGFTVTVLEKA 37
                89************************9986 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   1.3    0.0017       1.6       2      33 ..       7      38 ..       6      41 .. 0.93
   2 ?    3.5   0.1     0.025        23     115     167 ..     119     170 ..     111     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0017
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 dv+++GgG  G   A+ +a++g  V++leka 
   CTQ27077.1  7 DVAIVGGGMVGGALALGLAQQGFTVTVLEKAA 38
                 8****************************985 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.025
                  HHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS- CS
  HI0933_like 115 llkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSi 167
                  +++ + ++ v+lr+ +e+k++++ e++   ++++++e+++a+ ++ A G +S 
   CTQ27077.1 119 WQALAAHEAVTLRVGSELKTMQRGETQ-TALHLREGETIHARLVIGADGANSQ 170
                  666677899************887776.9999999*******99999999985 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00037      0.35       8      40 ..       6      38 ..       1     116 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00037
  NAD_binding_7  8 kkvlvvGgGevAarkvrklleagakvtvvapev 40
                     v +vGgG v+   +  l+++g +vtv+ ++ 
     CTQ27077.1  6 TDVAIVGGGMVGGALALGLAQQGFTVTVLEKAA 38
                   5799************************98874 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   5.7   4.5e-05     0.042       1      33 [.       7      39 ..       7     175 .. 0.79
   2 ?   -1.0   0.1      0.77   7.2e+02      81     152 ..     222     301 ..     219     318 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.5e-05
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   Dv ++G+G+ G a Al +a++G +v+v+ek+ +
     CTQ27077.1  7 DVAIVGGGMVGGALALGLAQQGFTVTVLEKAAP 39
                   9*****************************976 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.77
                    HHHHHHHTHHHHHHHHHHT.T----B.......CCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHH CS
  FAD_binding_2  81 lveafveaapeavdeLeel.gvpfsr.......tedgpvdvrelGglsatartlhdaadarretlvtghallarlvesar 152
                    ++ ++   ap+ +++L+++  +++++       ++ g+v     G++  t+r++ +  ++    +++  + +++l+ +  
     CTQ27077.1 222 WASLVWYDAPARIRQLQSMtMAQLQQeiashfpARLGRVTPQAAGAFPLTRRHALQYVQPGLALVGDAAHTIHPLAGQGV 301
                    66666677888899999886444444333333344456777777777666888885555544888888888888877655 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.2    0.0027       2.6       1     154 [.       9     166 ..       9     168 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0027
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsepgagrvwrtdqseelllNvpasemslftddp.............ptfaeWlrerga..lee 81 
                    aivG+G+ G a++  L+++      +++t+ +++ p     + ++ ++  +  ++a+ + l++                + +++W  e ++  ++ 
     CTQ27077.1   9 AIVGGGMVGGALALGLAQQ-----GFTVTVLEKAAPP--AFYPASAPDVRISAISAASVGLLKSLGvwdairamrvhayRRLETWEWESAHvaFDA 97 
                    8****************99.....5********6664..366666788888888889998887655888898988888855544444444322333 PP

  NAD_binding_9  82 .aeeldpddfvpRalyGrYlrdlfeellarlpegvtvevhraevvdleeradgqavlladgaslaadaVvLAlG 154
                       +l +   +   +  + l++ + ++la+  e vt++v  +e   +++ +++ a++l++g++++a+ V+ A G
     CTQ27077.1  98 aELKLPE---LGYMVENKVLQWGLWQALAAH-EAVTLRV-GSELKTMQRGETQTALHLREGETIHARLVIGADG 166
                    1233333...334566777888888888665.4567764.7888889988888899999999999999987755 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   3.2    0.0054       5.1       1      30 [.       7      36 ..       7      39 .. 0.96
   2 ?    1.0   0.1      0.22   2.1e+02      82     143 ..      99     165 ..      57     187 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0054
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLvee 30
                  Dv +vGGg+ G a A+  a++G +v ++e+
    CTQ27077.1  7 DVAIVGGGMVGGALALGLAQQGFTVTVLEK 36
                  9*************************9997 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.22
  FAD_oxidored  82 n........tfepevakavleeml.aeagvtvllntrlvevekegkriesvtveskegrktirAkvfiDAT 143
                   +        ++e +v++  l + l a + vt+  +++l+ +++ + + +++ +++   ++ti+A+++i A 
    CTQ27077.1  99 ElklpelgyMVENKVLQWGLWQALaAHEAVTLRVGSELKTMQRGE-TQTALHLRE---GETIHARLVIGAD 165
                   044444555556666655444444344566666666666666532.455555543...6666666666553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 2645.86
//
Query:       CTQ27078.1  [L=554]
Description: asparagine synthetase B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.8e-105  353.5   0.3    6.8e-60  203.6   0.1    2.1  2  Asn_synthase   Asparagine synthase
    1.1e-42  144.9   0.0    3.5e-42  143.2   0.0    1.9  2  GATase_7       Glutamine amidotransferase domain
      3e-37  127.8   0.0    7.7e-37  126.5   0.0    1.7  1  GATase_6       Glutamine amidotransferase domain
    5.2e-08   32.6   0.0      1e-07   31.7   0.0    1.4  1  DUF3700        Aluminium induced protein
  ------ inclusion threshold ------
      0.022   13.9   0.0      0.041   13.0   0.0    1.5  1  NAD_synthase   NAD synthase
        0.1   11.4   0.0       0.15   10.8   0.0    1.2  1  tRNA_Me_trans  tRNA methyl transferase
       0.11   12.3   0.0         22    5.1   0.0    2.4  2  Stealth_CR4    Stealth protein CR4, conserved region 4


Domain annotation for each model (and alignments):
>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.6   0.1   2.6e-63   6.8e-60       1     143 [.     211     366 ..     211     369 .. 0.98
   2 !  150.0   0.0   5.1e-47   1.3e-43     202     334 ..     365     511 ..     364     533 .. 0.94

  Alignments for each domain:
  == domain 1  score: 203.6 bits;  conditional E-value: 2.6e-63
  Asn_synthase   1 elrelLedaVkrrlradvpvGalLSGGlDSSliaalaarqsk.............splktFsigfeekgsdeakyakevaehlgtehtelvlteeel 84 
                   elr++Le++Vk++l++dvp+G+lLSGGlDSS+i+a+ +++++             ++l++F++g+  +gs+++k+a+eva+hlgt h+e+++t++e+
    CTQ27078.1 211 ELRQALEESVKSHLMSDVPYGVLLSGGLDSSVISAITKKFAArrvedqerseawwPQLHSFAVGL--EGSPDLKAAQEVANHLGTVHHEIHFTVQEG 305
                   69***************************************************************..****************************** PP

  Asn_synthase  85 ldalpdviyhlee..pfadrsaiplyllsrlakrkgvkvvLsGeGaDElfgGYpyfykaal 143
                   lda++dviyh+e+  ++++r+++p+yl+sr++k++g+k+vLsGeG+DE+fgGY+yf+ka+ 
    CTQ27078.1 306 LDAIRDVIYHIETydVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPN 366
                   **********************************************************995 PP

  == domain 2  score: 150.0 bits;  conditional E-value: 5.1e-47
  Asn_synthase 202 egedelhrelyldlktllpgdllrkDrasmahglEaRvPflDhrlvevalrlppelklrg..gieKyiLRealegylPeeileRpKegfsapvgewk 296
                   ++++elh+e++++l+ l+++d+ r+++a+ a+g+EaRvPflD+++++va+r++p++k++g  + eK+iLRe++e ylP+++++R+Ke+fs++vg+++
    CTQ27078.1 365 PNAKELHEETVRKLQALHMFDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGngKMEKHILRECFESYLPASVAWRQKEQFSDGVGYSW 461
                   57899*******************************************************99*********************************** PP

  Asn_synthase 297 lkgelrelaeellsds.............rlakeglldreaveelleehea 334
                   ++ +l+e a++++sd+             +++keg+l+re++eel++ ++a
    CTQ27078.1 462 ID-TLKEVAAKQISDQqletasfrfpyntPTSKEGYLYREIFEELFPLPSA 511
                   *9.*******************************************99988 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.0   1.4e-45   3.5e-42       1     121 [.      48     165 ..      48     167 .. 0.97
   2 ?   -3.0   0.0       2.5   6.3e+03      32      45 ..     206     219 ..     202     231 .. 0.75

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 1.4e-45
    GATase_7   1 hrrlsiidseagaQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllalleaewgeealerlnGmfAfaiwdeeekrlllaRDrlGi 99 
                 h+rlsi+d++agaQP++ +++++ ++++nGeiyN++ lr+e+ ++ ++f+t sD+ev+lal+++ +g e+l+ l+GmfAfa++d+e++ +l+ RD++Gi
  CTQ27078.1  48 HERLSIVDVNAGAQPLY-NAEKTHALAVNGEIYNHQALRAEYGDR-YQFQTGSDCEVILALYQE-KGPEFLDDLQGMFAFALYDSEKDAYLIGRDHIGI 143
                 89***************.699*********************886.9***************97.********************************** PP

    GATase_7 100 kPLyygedkgdallfaSelkal 121
                  PLy+g+d+++++++aSe+kal
  CTQ27078.1 144 IPLYMGHDEHGNFYVASEMKAL 165
                 *********88**********9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.5
    GATase_7  32 iyNykelreeLeak 45 
                 +++++elr+ Le++
  CTQ27078.1 206 VTDKNELRQALEES 219
                 788999***99986 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   0.0     3e-40   7.7e-37       1     134 []      33     161 ..      33     161 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.5 bits;  conditional E-value: 3e-40
    GATase_6   1 pdasglaslvedevalaHvRlaivglaeeegaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllalleelGeevlerlrGmfafa 99 
                 pd sg+  + +d+++laH Rl+iv+ +  +gaqP+++++++++l++NGeiyn+++lr+e+ +  +++f++ sD+ev+lal++e G+e l+ l+Gmfafa
  CTQ27078.1  33 PDWSGV--YASDKAILAHERLSIVDVN--AGAQPLYNAEKTHALAVNGEIYNHQALRAEYGD--RYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFA 125
                 788999..999***************7..9*******************************9..99********************************* PP

    GATase_6 100 iwdkrentlilardrlgvkplyyavd.esglafase 134
                 ++d++++ + + rd++g+ ply++ d ++++++ase
  CTQ27078.1 126 LYDSEKDAYLIGRDHIGIIPLYMGHDeHGNFYVASE 161
                 ************************999********8 PP

>> DUF3700  Aluminium induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   3.9e-11     1e-07     124     198 ..     113     186 ..      51     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 3.9e-11
     DUF3700 124 qvvkdleGkfafvlydskaktvfvaldadgsvplyWGiaadgsvvisddlelvkksCgksfapfPkGclftsegG 198
                 + + dl+G faf lyds++++ ++ +d+ g +ply G +  g+  ++ +++ +   C +++  fP+G    s+ G
  CTQ27078.1 113 EFLDDLQGMFAFALYDSEKDAYLIGRDHIGIIPLYMGHDEHGNFYVASEMKALVPVC-RTIKEFPAGSYLWSKDG 186
                 4688***********************************************999999.57899****87766655 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.6e-05     0.041       4      43 ..     211     256 ..     209     359 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
                   HHHHHHHHHHHHCTTSEEEEE..E-SSHHHHHHHHHHHHHH....T CS
  NAD_synthase   4 elvdflkeyvkkagakgvvlG..lSGGvDSslvaalavkal....g 43 
                   el + l+e vk++ ++ v +G  lSGG+DSs+++a+++k      +
    CTQ27078.1 211 ELRQALEESVKSHLMSDVPYGvlLSGGLDSSVISAITKKFAarrvE 256
                   677889999999999999999777************9997655552 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.9e-05      0.15       5      71 ..     232     301 ..     230     354 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.9e-05
  tRNA_Me_trans   5 valSgGVDSsvaaallkeqg.yevi..gvflklweeedeegkeccaeedlkdaervaeklgiplevvdfe 71 
                    v+lSgG DSsv  a+ k+   + v+      + w + ++   +   + dlk a++va++lg  ++ ++f+
     CTQ27078.1 232 VLLSGGLDSSVISAITKKFAaRRVEdqERSEAWWPQLHSFAVGLEGSPDLKAAQEVANHLGTVHHEIHFT 301
                    89********98777665331444410344455666777778999999*************999999986 PP

>> Stealth_CR4  Stealth protein CR4, conserved region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0084        22      26      39 ..     430     443 ..     415     452 .. 0.83
   2 ?    4.6   0.1     0.012        31      30      42 ..     499     511 ..     494     519 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0084
  Stealth_CR4  26 kallrdfleslFPv 39 
                  k++lr+++es++P 
   CTQ27078.1 430 KHILRECFESYLPA 443
                  79***********6 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.012
  Stealth_CR4  30 rdfleslFPvpSp 42 
                  r+ +e lFP pS+
   CTQ27078.1 499 REIFEELFPLPSA 511
                  789*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4281.26
//
Query:       CTQ27079.1  [L=250]
Description: NMP phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-23   82.6   0.0    3.3e-23   81.7   0.0    1.5  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase
      1e-19   70.3   0.0    2.2e-19   69.3   0.0    1.6  1  Hydrolase_like  HAD-hyrolase-like
    2.8e-11   44.1   0.0    7.3e-11   42.8   0.0    1.9  1  Hydrolase       haloacid dehalogenase-like hydrolase
    1.2e-09   38.5   0.0    8.6e-09   35.7   0.0    2.0  2  HAD_2           Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.0   7.3e-27   3.3e-23       1     101 []       6     105 ..       6     105 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 7.3e-27
                  EEEESTTTSEETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHHTT----GGGEEEHHHHHHHHHHHHSXXXEEEEESXHHHHHHHHHT CS
  Hydrolase_6   1 flfDidGvLwrgdkaipgaaealnalraagkpvvllTNnsskseeeyakkleklgvditeeqvvtsataaaeylkkrkadkkvlvigeeglreelkea 98 
                  +++DidGvL++++ a+pgaae+++++ ++g+p+v+lTN  s++ +++a+++   g+d+ ++ ++tsa+a+a++l++ +++kk +v+ge +l +el +a
   CTQ27079.1   6 IICDIDGVLMHDNVAVPGAAEFIKRILDKGMPLVMLTNYPSQTGQDLANRFATAGIDVPDSAFYTSAMATADFLRR-QEGKKAYVVGEGALIHELYKA 102
                  68*************************************************************************8.9******************** PP

                  TXE CS
  Hydrolase_6  99 gfk 101
                  gf+
   CTQ27079.1 103 GFT 105
                  *95 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0     5e-23   2.2e-19       2      74 ..     174     246 ..     173     247 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 5e-23
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEES CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddlae 74 
                     +gKP+p+++++al+++++++e+++++GD+l+tDi+++ +aG++++LVl+Gv++ +d  + +++p ++ +++ae
      CTQ27079.1 174 VGKPSPWIIRSALNKMQAHSEQTVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVAE 246
                     59********************************************************999*********998 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   1.6e-14   7.3e-11       2     210 .]       4     214 ..       3     214 .. 0.72

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 1.6e-14
                 SEEEEESBTTTBCHH...HHHHHHHHHHCHHHHHHHHHH........HHCHHHHHHHHHHHHHHHHHHHHHHETTTE....HHHHTHHHHHHHHHCHHH CS
                 xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttge...psvedvivsaalalaaaletg........sehpigkalvaaakarsgaltgfatfigrg....ayaigkpewltaldippd 85 
                   ++ D+dG+L + +   p   ++i+++   l + + ++        + + ++++++ a  +++   + f t++       + ++gk+ ++  +     
  CTQ27079.1   4 QNIICDIDGVLMHDNvavPGAAEFIKRI---LDKGMPLVmltnypsqTGQDLANRFATAGIDVPD--SAFYTSAMATadflRRQEGKKAYVVGE----- 92 
                 5699***********6677777777666...3333333355884455555555555444444433..444442222233459999999999999..... PP

                 HHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEH...HHHHHHHHH.TTGGGESEEEEHHCES........ST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxx.xxxxxxxxxxxxxxxx........xx RF
   Hydrolase  86 lgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnp...etaeraanq.lGddyfdaviasdiet........va 172
                  ga i+++ ++g t   +  + + v+  +   +   e+ +  a + a+g   +++t+ +     ++ ++    +G           ie+        v+
  CTQ27079.1  93 -GALIHELYKAGFTITDV--NPDFVIVGETR-SFNWEMMHKAAFFVANGA-RFIATNPDThgrGFYPACGALcAG-----------IEKisgrkpfyVG 175
                 .*****************..*******9977.5666777777888899**.*****8887444333434444355...........44344456678** PP

                 TTSHHHHHHHHHHHTSTGGGEEEEESSHH.HHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
   Hydrolase 173 kpspegkvaaireLqgkpeevamVGDgvn.DaaalaaAg 210
                 kpsp++ + a++++q+  e+++ VGD++  D+ a+ +Ag
  CTQ27079.1 176 KPSPWIIRSALNKMQAHSEQTVIVGDNLRtDILAGFQAG 214
                 ***********************************9998 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.16     7e+02       6     103 ..      11      43 ..       6      67 .. 0.57
   2 !   35.7   0.0   1.9e-12   8.6e-09     122     178 .]     163     220 ..     159     220 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.16
       HAD_2   6 DgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkkkevkpydgvkelLeeLkeagyklgivTs 103
                 Dg+l+  + +                                                                 ++g+ e+++ + ++g+ l   T+
  CTQ27079.1  11 DGVLMHDNVA-----------------------------------------------------------------VPGAAEFIKRILDKGMPLVMLTN 43 
                 5555544433.................................................................44555555555555555555555 PP

  == domain 2  score: 35.7 bits;  conditional E-value: 1.9e-12
       HAD_2 122 FdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakkagikviav 178
                 +++i + + +   KP+p +i+ al+k+++++e++++vGD+  tDi a+ +ag+++i v
  CTQ27079.1 163 IEKISGRKPFYVGKPSPWIIRSALNKMQAHSEQTVIVGDNLrTDILAGFQAGLETILV 220
                 578999999999*******************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2135.14
//
Query:       CTQ27080.1  [L=406]
Description: DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-95  319.3   0.7    3.4e-95  318.9   0.7    1.1  1  ROK             ROK family
    3.7e-08   33.2   0.0    1.1e-07   31.7   0.0    1.8  1  MarR            MarR family
    4.7e-05   22.9   0.2    4.7e-05   22.9   0.2    2.5  3  HTH_24          Winged helix-turn-helix DNA-binding
    6.5e-05   22.7   1.1     0.0002   21.2   0.3    2.2  2  MarR_2          MarR family
    0.00014   21.9   0.0    0.00039   20.5   0.0    1.7  2  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0055   16.6   0.1      0.015   15.3   0.1    1.7  1  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0059   16.4   0.0      0.016   15.0   0.0    1.8  1  HTH_IclR        IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.041   13.5   0.2      0.092   12.4   0.2    1.5  1  SMC_ScpB        Segregation and condensation complex subunit 
      0.054   13.6   0.2       0.17   12.0   0.0    1.9  2  FeoC            FeoC like transcriptional regulator
      0.068   13.1   0.0       0.13   12.1   0.0    1.5  1  TrmB            Sugar-specific transcriptional regulator TrmB
       0.15   12.4   0.6       0.41   11.0   0.1    2.0  2  Rrf2            Transcriptional regulator


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.9   0.7   2.1e-98   3.4e-95       2     293 ..      89     392 ..      88     393 .. 0.99

  Alignments for each domain:
  == domain 1  score: 318.9 bits;  conditional E-value: 2.1e-98
                 EEEEE-SSEEEEEEEETTS-EEEEEEE...EEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHHHT CS
         ROK   2 igidiGgtkialalvdeegeilarekv...etptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitwenfdlvekleerln 97 
                 ig+++G+ +++l+l d ++++l++e++   e+++et+e++l + ia+++++ +rk +elia+++++pGl++++sg i ++p+i +en++lv++le+r+n
  CTQ27080.1  89 IGVRLGRYDATLTLYDLSSKTLEEEHFplpERTQETLEHALLNIIATFIENCQRKIRELIAISVILPGLVDPESGVIRYMPHIAVENWGLVGALEKRFN 187
                 89*************************9999******************************************************************** PP

                 S-EEEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTC...... CS
         ROK  98 vpvevenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqq...... 190
                 v+++v +D++++alaE++fgas+d+e++i+v+v++G+GaG+i+ng++++GrnG++ge+GHiq+dp ge+c+CGn gClEt+a+++a+e+r+++      
  CTQ27080.1 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVDPLGERCHCGNFGCLETVAANAAIEQRVRHlleqgy 286
                 *************************************************************************************************** PP

                 ....CGTTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH.HHHHHHHHHCCTTTTCCCT-EEEE-S-STTHHH CS
         ROK 191 ....kgekleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll.eairklvkkylnkklevpvveivaaklgdkagl 284
                     +++++++k+i+k+a+kgd  a ev+e+++++l+k+ia +inlf+pq+iv++G+++ea+k+l +ai+ +++++++k+++++   +v+++  d++++
  CTQ27080.1 287 qsrlTPDDCTIKTICKAANKGDALACEVIEYVGRHLGKTIAIAINLFNPQKIVVAGEIVEAEKVLlPAIEGCINAQALKAFRKNL--PVVRSTLDHRSA 383
                 *************************************************************************************..9*********** PP

                 HHHHHHHCC CS
         ROK 285 lGaaaLake 293
                 +Ga+aL+k+
  CTQ27080.1 384 IGAFALVKR 392
                 *******97 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   6.7e-11   1.1e-07      10      48 ..      25      63 ..      18      67 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 6.7e-11
                HHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR 10 rilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                r+++++gp+s +++a+++++ +++vt+++++L+++Gli+
  CTQ27080.1 25 RLIDQHGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63
                789**********************************96 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.2   2.9e-08   4.7e-05       8      48 .]      23      63 ..      21      63 .. 0.96
   2 ?   -2.8   0.2       2.9   4.7e+03       7      23 ..     131     147 ..     128     151 .. 0.62
   3 ?   -1.0   0.0      0.83   1.4e+03      34      46 ..     274     286 ..     271     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.9e-08
      HTH_24  8 ILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                +++l+ +++ is  ++Ae++ l p+ v++  ++L+e GlIk
  CTQ27080.1 23 VYRLIDQHGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63
                5789************************************8 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.9
      HTH_24   7 kILelLqknprisqreL 23 
                 +I+ +  +n    +reL
  CTQ27080.1 131 NIIATFIENCQRKIREL 147
                 56666666666666665 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.83
      HTH_24  34 vnrrlkrLeeeGl 46 
                 + +r++ L e+G+
  CTQ27080.1 274 IEQRVRHLLEQGY 286
                 678*********8 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.3   1.2e-07    0.0002      15      56 ..      28      69 ..      21      76 .. 0.81
   2 ?   -1.4   0.0       1.4   2.3e+03      36      50 ..     272     286 ..     270     286 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.2e-07
                HCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE..ES CS
      MarR_2 15 grrpgrdltvgelarrlglsksavsrilkrLvaaGLverr..pg 56
                  +++  ++  ++a+  +l +++v++i + L ++GL+ ++   +
  CTQ27080.1 28 DQHGP--ISRIQIAEQSQLAPASVTKITRQLIERGLIKEVdqQA 69
                55666..88889*************************9985533 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHTTS CS
      MarR_2  36 savsrilkrLvaaGL 50 
                 +a+ ++++ L ++G+
  CTQ27080.1 272 AAIEQRVRHLLEQGY 286
                 67889********98 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.4e-07   0.00039      12      54 ..      22      64 ..      21      69 .. 0.94
   2 ?   -3.4   0.0         7   1.1e+04      39      51 ..     274     286 ..     271     287 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.4e-07
                    HHHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
  Fe_dep_repress 12 tIYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyvey 54
                    ++Y+l ++++++++ ++ae  + +p+sV++  + L + G+++ 
      CTQ27080.1 22 AVYRLIDQHGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64
                    79*************************************9875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7
                     HHHHHHHHHHTTS CS
  Fe_dep_repress  39 VsemlkkLekdGy 51 
                     + + ++ L ++Gy
      CTQ27080.1 274 IEQRVRHLLEQGY 286
                     5688999999999 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   9.2e-06     0.015      21      53 ..      32      65 ..      14      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.2e-06
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.E CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglis.r 53
                p+++ ++A+   l + +v++i ++L ++gli+  
  CTQ27080.1 32 PISRIQIAEQSQLAPASVTKITRQLIERGLIKeV 65
                99*****************************953 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     1e-05     0.016      19      50 ..      33      64 ..      18      66 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1e-05
                -BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 19 ltlselArrtglpkStvhRlLqtLvelGyveq 50
                 +  ++A+++ l++++v  +++ L+e+G+++ 
  CTQ27080.1 33 ISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64
                55569************************986 PP

>> SMC_ScpB  Segregation and condensation complex subunit ScpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   5.6e-05     0.092      91     134 ..      26      72 ..      13      88 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.6e-05
    SMC_ScpB  91 iIaykqpvtraeiee...iRGvnsdsvvrtLlerglieekgrkeepg 134
                 +I  + p++r +i+e   +   +++++ r+L+ergli+e+ ++ ++g
  CTQ27080.1  26 LIDQHGPISRIQIAEqsqLAPASVTKITRQLIERGLIKEVDQQASTG 72 
                 678899*******8622255667999**************9988765 PP

>> FeoC  FeoC like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0001      0.17       8      53 ..      26      71 ..      21      75 .. 0.91
   2 ?   -3.9   0.1       9.6   1.6e+04      52      61 ..     253     260 ..     243     261 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
        FeoC  8 yleergrvslkeLsrhfkaspealeamLeqwvrkGrvekvaatacc 53
                +++++g +s+ +++ + +  p+ + ++  q++ +G +++v+++a  
  CTQ27080.1 26 LIDQHGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAST 71
                6899*************************************99875 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 9.6
        FeoC  52 ccsgsCkkCg 61 
                   ++ C+ Cg
  CTQ27080.1 253 L-GERCH-CG 260
                 2.67887.87 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.2e-05      0.13      12      57 ..      22      67 ..      17      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.2e-05
                CHCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB 12 kvYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlVerekg 57
                 vY  + ++gp +  +iae++ +  ++v ++ r+L+++Gl++ +++
  CTQ27080.1 22 AVYRLIDQHGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQ 67
                567666689999999**************************98765 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00025      0.41      22      57 ..      29      64 ..      20      69 .. 0.88
   2 ?   -2.9   0.0       5.5   8.9e+03      54      65 ..     217     228 ..     214     229 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
                TCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        Rrf2 22 eeepvsseeiaerqnispsylekilakLrkaglvks 57
                +++p+s  +iae+ ++ p  + ki+++L + gl+k 
  CTQ27080.1 29 QHGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64
                45578999**************************86 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.5
                 SEEEETTT-TCE CS
        Rrf2  54 lvksvrGkgGGy 65 
                 lv++ rG g G+
  CTQ27080.1 217 LVRVHRGTGAGI 228
                 8999****9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.35
# Mc/sec: 3452.61
//
Query:       CTQ27081.1  [L=382]
Description: N-acetylglucosamine-6-phosphate deacetylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-47  161.6   0.1    3.6e-47  161.3   0.1    1.0  1  Amidohydro_1  Amidohydrolase family
    2.3e-05   24.1   0.4    5.3e-05   22.9   0.0    1.8  2  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.3   0.1   4.1e-51   3.6e-47       1     344 []      50     379 ..      50     379 .. 0.95

  Alignments for each domain:
  == domain 1  score: 161.3 bits;  conditional E-value: 4.1e-51
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH.....HHHHHHHHHHT...SSSEEEEEEESSEGGSG CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst.....giealleaaee...lplglrilggkvsldrg 89 
                   i+ PG+ID+++ +++++++++       p+    e+le++ k++ +sG+t+++ + +t s+     g++ ++e + +   ++lgl+++g+++++  +
    CTQ27081.1  50 IIAPGFIDVQLNGCGGVQFND------SPEAVTVETLEIMQKANERSGCTSFLPTLITSSDdlmkqGVRVMREYLQKhpnQALGLHLEGPWLNIV-K 139
                   689*****************9......******************************9988****99999999666667999************9.* PP

                   CCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCC..... CS
  Amidohydro_1  90 saetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaes..... 181
                   ++ + ++ ++k +a   ++++++ad+++kv+lap+    +++e +++++       + ++++a++++++ ++a+ +f  +i+++thl++a+      
    CTQ27081.1 140 KGTHNPDYVRKPDAALVDFLCDNADVITKVTLAPE---RVEPEVIRKLV------AAGIVVSAGHSNATLKEAKVGFRAGITFATHLYNAMPyitgr 227
                   ***********************************...89*********......8***************************************** PP

                   ........HHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHH.TSCEEEEEECT..TSSCCGGHHHHHHHHHHH CS
  Amidohydro_1 182 ........lglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkalde.GvkvglgtDga..asgnslnlleelrlalkl 267
                           ++ +d+++ i+++g+h++ ++++  ++rlk+++++++ ++    + +++ +  a +    + gl++D++   sg+sl+++e++r+++  
    CTQ27081.1 228 epglagaiFDEPDVYCGIIVDGMHVDYANVRN-AKRLKGDKLCLVTDATAPAGANIDQFIFAGKTiYYRNGLCVDENgtLSGSSLTMIEGVRNLV-- 321
                   **************************775555.8999******99999999999999999998887777******8889****************.. PP

                   HHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 268 qrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkvivkGklv 344
                           e++g+ l e+lrmaT+++A+a+g+d+++Gsi++G  A+l+++           ++d +++k+iv+G+ v
    CTQ27081.1 322 --------EHCGVALDEVLRMATLYPARAIGVDKQLGSIAPGMVANLTAF-----------TRDYKITKTIVNGNEV 379
                   ........9*****************************************...........*************987 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.16   1.4e+03       6      17 ..      47      58 ..      46      58 .. 0.90
   2 !   22.9   0.0   5.9e-09   5.3e-05     407     448 ..     325     366 ..     264     380 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.16
  Amidohydro_3  6 kGrlvlPGFvDs 17
                  +G++ +PGF+D+
    CTQ27081.1 47 NGAIIAPGFIDV 58
                  6999*******6 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 5.9e-09
  Amidohydro_3 407 elsleealalyTrgpAkalgledrkGtLevGadADlvvldad 448
                    + l e+l++ T  pA+a+g ++  G++++G+ A+l+ + +d
    CTQ27081.1 325 GVALDEVLRMATLYPARAIGVDKQLGSIAPGMVANLTAFTRD 366
                   57899********************************99644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 3300.20
//
Query:       CTQ27082.1  [L=266]
Description: glucosamine-6-phosphate deaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-20   73.5   0.0    3.8e-20   72.8   0.0    1.3  1  Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phospho


Domain annotation for each model (and alignments):
>> Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   2.1e-24   3.8e-20       3     215 ..       9     227 ..       7     238 .. 0.80

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 2.1e-24
                      HHHHHHHHHHHHHHHHHHHHHHHS-.EEEEE--SHCHHHHHHHHHCSG.GGGGS-GGGEEEEESEEES.S-TTSTT-HHHHHHHHTGGGS---G CS
  Glucosamine_iso   3 keelaealaarivealeealaergr.aslalsGGstpkalyealaeeeeaaaaldwskvhvflgDERf.VpaddpdsNaklareallskvkipe 94 
                      +e++ + +a++iv+++++   + +r + l l  G tp + y+al e ++a+ ++++++v  f  DE + +p+++p+s +  ++++++++v+ip+
       CTQ27082.1   9 AEQVGKWAARHIVNRINAFKPTADRpFVLGLPTGGTPLTAYKALVEMHKAG-QVSFKHVVTFNMDEYVgLPKEHPESYHSFMHRNFFDHVDIPA 101
                      5677888999*******998766555*******************998766.99************9879************************ PP

                      GGEE-S-TTSSTHHHHHHHHHHHHHHHHCCSSSSSESEEEE---TTS-BTTB-TTCHHHHCSSSSEEEESSBS............TSSS-EEEE CS
  Glucosamine_iso  95 anvhpikesaaeapeaaaaayeeelkellakelpvfDlvlLGmGpDGHtaSLFPgspeleetdrlvvavedsp............kpppeRitl 176
                      +n+  ++ +a  + +a+ ++yee+++++      ++ l + G+G+DGH+a   P s   ++++r+ +  ++++              p+  +t+
       CTQ27082.1 102 ENINLLNGNAP-DIDAECRRYEEKIRSY-----GKIHLFMGGVGNDGHIAFNEPASSL-ASRTRIKTLTHETRvansrffdgdvdLVPKYALTV 188
                      ******97666.69************84.....4699************955455544.43334333333222221112333343556899999 PP

                      -HHHHTTCSEEEEEEESHHHHHHHHHHHTT..TTTSGGG CS
  Glucosamine_iso 177 TlpvlnsarevlflvaGeeKaealeevlsgedpeelPaa 215
                       + +l +a+ev++lv G++Ka al+++++g+ ++++ ++
       CTQ27082.1 189 GVGTLLDAEEVMILVLGHQKALALQAAVEGNVNHMWTIT 227
                      9***************************98877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2258.74
//
Query:       CTQ27083.1  [L=60]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.2   0.0       0.18   11.2   0.0    1.1  1  PBP_sp32  Proacrosin binding protein sp32


Domain annotation for each model (and alignments):
>> PBP_sp32  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     1e-05      0.18      80     110 ..      27      57 ..      15      60 .] 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1e-05
    PBP_sp32  80 enhGlvPdGavcsnleyaswfesfcdfakyr 110
                 + hGl+P+Gav + l    w +s   +  yr
  CTQ27083.1  27 NQHGLTPVGAVAAILSLECWRQSARIYFDYR 57 
                 68***************99999987777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 465.83
//
Query:       CTQ27084.1  [L=651]
Description: fused N-acetyl glucosamine specific PTS enzymes: IIC component; IIB component; IIA component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-75  251.6  35.1    9.2e-75  251.6  35.1    2.1  2  PTS_EIIC       Phosphotransferase system, EIIC
    3.2e-47  159.4   0.4    5.6e-47  158.7   0.4    1.4  1  PTS_EIIA_1     phosphoenolpyruvate-dependent sugar phosphotra
    1.6e-12   46.7   0.3    2.8e-12   45.9   0.3    1.4  1  PTS_EIIB       phosphotransferase system, EIIB
     0.0083   16.3   0.0      0.023   14.9   0.0    1.7  1  Peptidase_M23  Peptidase family M23
  ------ inclusion threshold ------
      0.032   14.1   0.0        5.6    6.9   0.0    2.9  2  Biotin_lipoyl  Biotin-requiring enzyme
      0.069   13.7   3.2        0.3   11.7   0.1    2.7  2  OAD_gamma      Oxaloacetate decarboxylase, gamma chain
      0.079   13.2   0.1      0.079   13.2   0.1    2.4  3  HemY_N         HemY protein N-terminus
        0.9   10.1   6.5        2.3    8.8   6.5    1.7  1  TPPII_N        Tripeptidyl peptidase II N terminal


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.6  35.1   4.1e-78   9.2e-75       2     324 .]      12     300 ..      11     300 .. 0.95
   2 ?   -3.1   3.0       1.3     3e+03     143     184 ..     321     362 ..     304     365 .. 0.74

  Alignments for each domain:
  == domain 1  score: 251.6 bits;  conditional E-value: 4.1e-78
    PTS_EIIC   2 dgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvll 100
                 +++ lpi++l+++++ll +g+    +dl +++             +++qag+a+f+nL+l+faig+a +++k+++g a+lag++g+ ++++        
  CTQ27084.1  12 RALQLPIAVLPVAALLLRFGQ----PDLLNVP-------------FIAQAGGAIFDNLALIFAIGVASSWSKDNAGSAALAGAVGYFVMTK-------- 85 
                 6899*****************....5666665.............9******************************************997........ PP

    PTS_EIIC 101 laagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggsg 199
                           a++   +  ++gv+++ii gl+a+ +yn++     ikLP++l ff gkrfvpi t++ ++l+++ +++++wp++q+++ + g+++ ++g
  CTQ27084.1  86 ----------AMVTINPEINMGVLAGIITGLVAGAVYNRWAG---IKLPDFLSFFGGKRFVPIATGF-FCLILAAIFGYVWPPVQHAIHSGGEWIVSAG 170
                 ..........789999**************************...**********************.99999*****************99******* PP

    PTS_EIIC 200 sllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagk.......eaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllgsa 291
                  +lg++ifgf++rllip+GlH+++++++wf+++  + ++a++ ++g  +       +a+++++g+f+ +mfG+pga+la+y+aa+++++ ++ ++l+s+
  CTQ27084.1 171 -ALGSGIFGFINRLLIPTGLHQVLNTIAWFQIG-EFTNAAGAVFHGDINrfyagdgTAGMFMSGFFPIMMFGLPGAALAMYLAAPKARRPMVGGMLLSV 267
                 .99*****************************8.5555559999995555555557******************************************* PP

    PTS_EIIC 292 altpflfGItepleFgfpfvlnlllfipallag 324
                 a+t+fl+G+tepleF f+f ++ll++++a+l+g
  CTQ27084.1 268 AITAFLTGVTEPLEFLFMFLAPLLYLLHAVLTG 300
                 *******************************98 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
    PTS_EIIC 143 nitikLPeslpffvgkrfvpiittlvvllvvglvllliwpai 184
                 +i   L  slp ++++    +++++v+++v +l+++ +++++
  CTQ27084.1 321 AIDYVLMYSLPAASKNVWMLLVMGVVFFFVYFLLFSAVIRMF 362
                 556666678888888888889999988888888888877765 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7   0.4   2.5e-50   5.6e-47       2     127 .]     502     627 ..     501     627 .. 0.98

  Alignments for each domain:
  == domain 1  score: 158.7 bits;  conditional E-value: 2.5e-50
                 S-----SEEEEEGGGSSSHHHHT-TTSEEEEEEE-SSEEEES--EEEEE--SSSSEEEEESSSS-EEEEE-SSSTTTTTTTTEEES----SEE-SEEEE CS
  PTS_EIIA_1   2 eilspvsGevvpleevpDevfaekmlGdGvaiepsegkvvapvdGkvekvfptkHaigiktddgvevlihiGidtvklkgegFellvkegdkVkagdkl 100
                 +++sp++G+vv le+vpDe+fa+k++GdG+a++p+++ vvap++G+v+k+f+t+Ha++++t++g+e+++h+Gidtv l+g+gF+ lv+eg+ Vkag+++
  CTQ27084.1 502 SLVSPITGDVVTLEQVPDEAFASKAVGDGIAVKPTSNIVVAPAAGTVVKIFNTNHAFCLETNNGAEIVVHMGIDTVALEGKGFKRLVEEGTDVKAGEPI 600
                 689************************************************************************************************ PP

                 EEE-HHHHGGGSS---EEEEESSGGGX CS
  PTS_EIIA_1 101 vevdleaikkagystttpvvvtnseev 127
                 +e+dl+ +++++ s+++pvv++ns+++
  CTQ27084.1 601 LEMDLDFLNANARSMISPVVCSNSDDY 627
                 ***********************9975 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.3   1.2e-15   2.8e-12       3      34 .]     396     427 ..     394     427 .. 0.96

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 1.2e-15
                 HHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB   3 IldalGGkdNIesvthCaTRLRltlkDaskvd 34 
                 +++a+GG dN++ +++C+TRLRlt+ D++kv+
  CTQ27084.1 396 YIAAVGGTDNLKAIDACITRLRLTVGDSAKVN 427
                 699****************************9 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     1e-05     0.023       9      72 ..     534     603 ..     527     613 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-05
                    EETTT-EEEESSSEEEEEEEEET.....TTEEEEEEEECTCEEEEEEEESEES..S-TTEEE-TTCEEEEE CS
  Peptidase_M23   9 aapkgtpVlAaadGtVvfagkke.....gyGnvviidhgdgystlyahlskis..vkegqkVkaGqvIGtv 72 
                    + p+++ V+A+a+GtVv++ +++     ++ n   i    g+ t+ +  + ++  v+eg  VkaG++I ++
     CTQ27084.1 534 K-PTSNIVVAPAAGTVVKIFNTNhafclETNNGAEIVVHMGIDTVALEGKGFKrlVEEGTDVKAGEPILEM 603
                    3.34778*********998885557888555555555556666666666665566************9655 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.024        55      42      59 ..     537     554 ..     533     558 .. 0.87
   2 ?    6.9   0.0    0.0025       5.6      15      38 ..     581     605 ..     574     611 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.024
                    EEEEEBSSSEEEEEESST CS
  Biotin_lipoyl  42 emeieapkaGvvkeilvk 59 
                    ++ + ap+aG+v++i   
     CTQ27084.1 537 SNIVVAPAAGTVVKIFNT 554
                    6889**********9865 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0025
                    ..ECSESSSTTCEE-TTSEEEEEEC CS
  Biotin_lipoyl  15 g.vvevlvkvGdkVkagqvlaevea 38 
                    g   + lv++G  Vkag++++e+  
     CTQ27084.1 581 GkGFKRLVEEGTDVKAGEPILEMDL 605
                    4456689999999999999999865 PP

>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00014       0.3       7      57 ..     339     387 ..     337     413 .. 0.62
   2 ?    1.2   0.7      0.25   5.5e+02      29      58 ..     463     496 ..     458     520 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
   OAD_gamma   7 tllGmgvVFvvLilLslvislfskiikkkakkkkkkakaaaaaaaaaaaaa 57 
                 +ll mgvVF++  +L +  s++ +++++k++  ++ka+    ++a++++++
  CTQ27084.1 339 MLLVMGVVFFFVYFLLF--SAVIRMFNLKTPGREDKAADVVTEEANSNTEE 387
                 88889999999998855..44445555555555555555555554444433 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.25
   OAD_gamma  29 skiikkkakkkkkkakaaaaaaaaaaaaa....e 58 
                 +k++++   +++++a+a + a+aa+aa++    +
  CTQ27084.1 463 KKVVTRGPVAAAAAAPAGNVATAAPAAKPqavaN 496
                 5555555444444444444444444333323332 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.4       2.4   5.3e+03       1      34 [.      79     112 ..      79     118 .. 0.78
   2 ?   -4.9   1.3         8   1.8e+04      26      38 ..     290     302 ..     280     313 .. 0.46
   3 ?   13.2   0.1   3.5e-05     0.079      15      71 ..     336     393 ..     325     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.4
      HemY_N   1 GyVliawggyrietslvvavlllvllfvllylll 34 
                 Gy +++ +  +i+  +++ vl+ +++ +++ +++
  CTQ27084.1  79 GYFVMTKAMVTINPEINMGVLAGIITGLVAGAVY 112
                 7888888888999999999999888877776665 PP

  == domain 2  score: -4.9 bits;  conditional E-value: 8
      HemY_N  26 lfvllylllrllr 38 
                 l+ ll+++l  ++
  CTQ27084.1 290 LLYLLHAVLTGIS 302
                 3333333333333 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 3.5e-05
      HemY_N  15 slvvavlllvllfvllylllrllrlllrlparvr.rwrrrrrerkarealseGliala 71 
                 ++++++++ v++f++ +ll++++ ++++l +  r    +    + a+ +++eGl++la
  CTQ27084.1 336 NVWMLLVMGVVFFFVYFLLFSAVIRMFNLKTPGReDKAADVVTEEANSNTEEGLTQLA 393
                 68***************************87777334466678889999999999887 PP

>> TPPII_N  Tripeptidyl peptidase II N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   6.5     0.001       2.3       8      51 ..     472     515 ..     466     547 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.001
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     TPPII_N   8 saanataaaaaavtanaakpkaaataqaatsvgspaagdgvatq 51 
                 +aa+a+ a ++a++a aakp+a+a+a+   s+ sp +gd v+ +
  CTQ27084.1 472 AAAAAAPAGNVATAAPAAKPQAVANAKTVESLVSPITGDVVTLE 515
                 3344445667788899***********************98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1029  (0.0573931); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 4766.21
//
Query:       CTQ27085.1  [L=555]
Description: glutamyl-tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.3e-129  429.0   0.0   1.1e-128  428.6   0.0    1.1  1  tRNA-synt_1c    tRNA synthetases class I (E and Q), catalytic
    9.6e-66  221.0   0.0    3.1e-65  219.3   0.0    1.8  2  tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codo


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.6   0.0  1.2e-132  1.1e-128       2     313 ..      28     337 ..      27     338 .. 0.99

  Alignments for each domain:
  == domain 1  score: 428.6 bits;  conditional E-value: 1.2e-132
                   -EEEE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE- CS
  tRNA-synt_1c   2 VrtRfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvce 98 
                   V+tRf+PeP+GyLHiGhak+++ln+++A++++G+++lR++DT+p +e+ e++esi++d++wlg++w+  + y+sd+fd+l++ya+eLi+kG+AYv+e
    CTQ27085.1  28 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYQGQCNLRFDDTNPVKEDIEYVESIKNDVQWLGFHWSGDVCYSSDYFDQLHQYAVELINKGLAYVDE 124
                   9************************************************************************************************ PP

                   STHHHHHHHHCCSS..HSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSS.GGGSSTEEEEEEESGGGSBTTTBTSTSEEE-HHHHHH CS
  tRNA-synt_1c  99 ctkeeleeereeqe..klgskerdrydeenlklfeeemkkgkaegekavvRlkideess.vefrDlvrgriklepqeihdlvivksdiyPtYdfavv 192
                    +++e++e+r++ +   ++s++rdr++eenl+lf e+m++g +e++ka++R+kid++s+ +++rD+v +rik+++   h+++++k++iyP+Ydf+++
    CTQ27085.1 125 LSPDEIREYRGTLKapGKNSPYRDRSVEENLALF-EKMRSGGFEEGKACLRAKIDMASPfIVMRDPVLYRIKFAE---HHQTGNKWCIYPMYDFTHC 217
                   ***********998888999**************.9***************************************...******************* PP

                   HHHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHHHHHHH CS
  tRNA-synt_1c 193 idDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpekerelftre 289
                   i+Dale+ith+l+t ef+dn++ y+w+l++++++v+p ++e++rlnle++++SKRkl++lv+ek+v++wdd+r++++++lrr+G+t+e++re+++r+
    CTQ27085.1 218 ISDALEGITHSLCTLEFQDNRRLYDWVLDNISIPVHPRQYEFSRLNLEYTVMSKRKLNQLVTEKHVEGWDDPRMPTISGLRRRGYTAESIREFCKRI 314
                   ************************************************************************************************* PP

                   CCCSSS.EEEEHHHHHHHHHHHHH CS
  tRNA-synt_1c 290 eliksfdlnresksleafdrkkLe 313
                   +++k++ +++e+ sle++ r++L+
    CTQ27085.1 315 GVTKQD-NTIEMASLESCIREDLN 337
                   ******.9**************98 PP

>> tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.25   2.3e+03     105     131 ..     239     267 ..     215     303 .. 0.58
   2 !  219.3   0.0   3.4e-69   3.1e-65       1     174 []     340     529 ..     340     529 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.25
  tRNA-synt_1c_C 105 giihWvsaeeaveaevrlYd..rLfkeee 131
                         Wv ++ +++++ r Y+  rL  e +
      CTQ27085.1 239 RLYDWVLDNISIPVHPRQYEfsRLNLEYT 267
                     46678887777777555554215544333 PP

  == domain 2  score: 219.3 bits;  conditional E-value: 3.4e-69
  tRNA-synt_1c_C   1 ApRymaVldpvkvtienlpegkeeelevplhpknpelgtrkvpfskeiyiereD........akrlkpgeevrLkelynikveevekdesgevte 87 
                     ApR+maV+dpvk++ien+p+g++e + +p+hp++pe+g+r+vpfs ei+i+r+D        +krl  g+evrL+++y+ik+e+vekd++g++t+
      CTQ27085.1 340 APRAMAVIDPVKLVIENYPQGESEMVVMPNHPNKPEMGSREVPFSAEIWIDRADfreeankqYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITT 434
                     8********************************************************************************************** PP

  tRNA-synt_1c_C  88 lkleydgesleea....rkkkgiihWvsaeeaveaevrlYdrLfkeee.de..dfl..lnpdslkvleeglaepalanlkkgdivQfeRiGyfrv 173
                     + ++yd ++l+++    rk+kg+ihWvsa++a+++e+rlYdrLf++++  +  dfl  +np+sl  +++g+aep+la++++g+ +QfeR+Gyf++
      CTQ27085.1 435 IFCTYDADTLSKDpadgRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNpGAaeDFLavINPESLV-IKQGYAEPSLAQAEAGKAYQFEREGYFCL 528
                     **********999********************************8887667777789******5.69**************************9 PP

  tRNA-synt_1c_C 174 d 174
                     d
      CTQ27085.1 529 D 529
                     8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4356.93
//
Query:       CTQ27086.1  [L=102]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.17   12.3   0.0       0.24   11.8   0.0    1.3  1  FCSD-flav_bind  Flavocytochrome c sulphide dehydrogenase, fla


Domain annotation for each model (and alignments):
>> FCSD-flav_bind  Flavocytochrome c sulphide dehydrogenase, flavin-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.3e-05      0.24       5      21 ..      39      55 ..      35      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.3e-05
  FCSD-flav_bind  5 laNtCYSlvapdyaisV 21
                    +++ CYSl+++d ++ V
      CTQ27086.1 39 FMSFCYSLISDDFVMEV 55
                    7999********99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 807.26
//
Query:       CTQ27087.1  [L=467]
Description: putative outer membrane porin [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-25   87.7  13.1    1.1e-24   87.3  13.1    1.1  1  OprD      outer membrane porin, OprD family
  ------ inclusion threshold ------
      0.085   13.0   0.1       0.26   11.5   0.1    1.8  1  DUF2749   Protein of unknown function (DUF2749)
      0.092   12.4   0.1       0.23   11.1   0.1    1.6  1  NdhS      NAD(P)H dehydrogenase subunit S


Domain annotation for each model (and alignments):
>> OprD  outer membrane porin, OprD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3  13.1   1.8e-28   1.1e-24       1     368 [.      33     431 ..      33     442 .. 0.79

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 1.8e-28
                 XHTTTTEEEEEEEEEEEEEEEEECTTECCEEEE...EEEEEEEEEEEE---SSSEEEEEEEEEEEEEEEEEEGCC--.SSSS-BETTSCBESEEE.... CS
        OprD   1 kgFiedsklslllRnfYfnrdfrdaeakqskre...ewaqgfilnfeSGyTqGtvGfGvDalgllglkLdggkgrsg.tgllpldsdgraaddys.... 91 
                 +gFi+ds+l+  +  +  +rd++d +++ +++      +  + l+f+SGy   +  fG+D++++ ++ + ++++++  +++  +++++  ++dys    
  CTQ27087.1  33 AGFIDDSTLTGGIYYWQRERDRKDVTDGDKYKTnlsHSTWNANLDFQSGYAADM--FGLDIAAFTAIEMAENGDSGHpNEIAFSSRNKAYDEDYSgdks 129
                 69**********99999999999998777777734445556679*******998..7789999999999998888774666444456666666753311 PP

                 ...EEEEEEEEEETTEEEEEEEE--EETTEEE-SSSSS--EEEEEEEEEE....ESTTEEEEEEEEEEEE-TT-SSEEEEEBTTC.STCEEESEEEEEE CS
        OprD  92 ...klglavKlrvskteLkvGellpklPvlasndsRllPqtfqGvlltsk....eidgLtLeaGrltkvsqrnsssledlsltyg.aaskesdrlnfaG 182
                       +a+K+++     ++G ++p+   l + +   +P t+qG+    +        L++     ++ +++ + +++d++   + ++++++d l+ +G
  CTQ27087.1 130 gisLYKAAAKFKYGPAWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGANfdygTAGALSFSYMWTNEYKAPWHIEMDDFY---QnDKKTKVDYLHSVG 225
                 111455799**********************************99865431111334455555555555555555555555...34689********** PP

                 EEEEESTTEEEEEEEEEETTTEEEEEEEEEEEEEETSTEEEEEEEEEEEEEE-TTC..TTCS-EEEEEEEEEEEEETTE.....EEEEEEEEEESSS-- CS
        OprD 183 gdYkvtdrlslslyaaelediyrqqylglkhklplgedlsLktdlnyyktkdegka..kagkidnrtyslaltyklgah.....sltlgyqrvsGdtgf 274
                 ++Y+++++l l+   ++ + +++q+++++++k++++ +  L+t+ ++y t+d+ ++   ++  d +++  alt  ++       +l  ++ + +G++g+
  CTQ27087.1 226 AKYDFKNDLVLEAAFGQAQGYIDQYFAKASYKFDVA-GAPLSTSYQFYGTRDKVSNggVNDIYDGTAWLQALTFGYKVAdvldlRLEGTWVKADGQQGY 323
                 ***********************************9.55*************9997446778899***888777665541122257889********** PP

                 --BT.........TSECTTSTT-BSSB-S-STT-EEEEEEEEEEGGGCT-TTEEEEEEEEEEEEEEESTS........TSSEEEEEEEEEEEEEE--SS CS
        OprD 275 dyvn.........gtdsiylansvqvsdFnapgErswqlrYdldfaalgvPGLsfmtryvrGddidttka........ngkdgkewerdlelkYvvqsG 356
                    +         g  +i+   + + sdFna+gE+++ +   +d+++  +PG+ f + yv  +d++  ++             ke    l++ Y+vq+G
  CTQ27087.1 324 FLQRmtptyassnGRLDIW---WDNRSDFNANGEKAVFFGAMYDMKNWDMPGWAFGASYVYAWDAKPGRMsspdayydPDYRLKESAYSLDAMYTVQEG 419
                 8877778886433233333...34457*******************************************9***9987777888999************ PP

                 TTTTEEEEEEEE CS
        OprD 357 plkdlslrlrna 368
                  +k++ ++l  +
  CTQ27087.1 420 RAKGTLFKLHFT 431
                 ****99998755 PP

>> DUF2749  Protein of unknown function (DUF2749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   4.3e-05      0.26       9      59 ..      11      62 ..       9      65 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.3e-05
     DUF2749  9 lviavaagagtilwlvvqpragtsgs.geaqRehrerFfgadkd.rdvrgGQe 59
                l++a+aa++++  w+ v+p+a+++g  ++   +    +++ ++d +dv++G +
  CTQ27087.1 11 LALAIAAVTAMSGWV-VAPQASAAGFiDDSTLTGGIYYWQRERDrKDVTDGDK 62
                8999***********.******9985133334444455566666556666665 PP

>> NdhS  NAD(P)H dehydrogenase subunit S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   3.9e-05      0.23      14      47 ..     266     299 ..     263     302 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.9e-05
        NdhS  14 diYygfeGlvQrvsdgkaaVlFeGGnWdklvtfr 47 
                 ++ y+f G   +vs+g +  +++G  W + +tf 
  CTQ27087.1 266 STSYQFYGTRDKVSNGGVNDIYDGTAWLQALTFG 299
                 56799***************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 3085.35
//
Query:       CTQ27088.1  [L=338]
Description: putative citrate utilization protein A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-07   30.8  17.1    1.9e-07   30.3  17.1    1.2  1  MFS_1     Major Facilitator Superfamily
    0.00039   19.4   7.0    0.00057   18.9   7.0    1.2  1  Sugar_tr  Sugar (and other) transporter
     0.0025   18.1   1.3     0.0025   18.1   1.3    2.1  2  SpoVAB    Stage V sporulation protein AB
  ------ inclusion threshold ------
      0.028   14.5   0.3        5.8    7.1   0.0    2.8  2  YrhC      YrhC-like protein
       0.11   12.9   7.6      0.041   14.2   4.0    2.1  2  DUF5413   Family of unknown function (DUF5413)
       0.13   12.5   0.0        0.4   10.9   0.0    1.8  1  DUF4381   Domain of unknown function (DUF4381)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3  17.1   6.5e-11   1.9e-07      47     189 ..      26     192 ..      12     278 .. 0.64

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 6.5e-11
       MFS_1  47 vaslplGrlsdrfGrrrvlllglllfalglllll..f.a..sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa.gfslGailgp 138
                 + ++  G++sdr+Grr+vl+   +l +l+ ++++  + +  + ++ + lvl  ++ ++ g+++ a++a+++++ p   r+ +++l+ + ++++   l+p
  CTQ27088.1  26 IWNFASGAISDRIGRRPVLMGITVLALLT-TWPVmhWlTvaPDFTrMTLVLLWFSFFF-GMYNGAMVAALTEVMPVHVRTVGFSLAFSlATAIFGDLTP 122
                 567889***********999999999999.7777354525588888888888877777.89***************9999999887773556666899* PP

       MFS_1 139 llggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkeee.................k 189
                 +++ +l+++ g       W  +  ++++++  +     l+++ ++   + +s++++                   
  CTQ27088.1 123 AISTALVELTGdksppgwWLMCAALCGFIATAL-----LFVRLSRGYQPAESQRKKNkraeicparlplssdlmG 192
                 ***********9986665544444444444444.....5555555555555555552123334444444333331 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   7.0   1.9e-07   0.00057     304     414 ..      28     133 ..      21     164 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.9e-07
                 HHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHH.HHHHHHH CS
    Sugar_tr 304 tfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavav.nwlanfl 401
                  f++  ++dr+GRR++l+  ++ +++ ++ +   +++l+ +       ++  ++ f ++f++  g +++  ++E+ p +vR+++ ++a+ +   ++  l
  CTQ27088.1  28 NFASGAISDRIGRRPVLMGITVLALLTTWPV---MHWLTVAP--DFTRMTLVLLWFSFFFGMYNGAMVAA-LTEVMPVHVRTVGFSLAFSLaTAIFGDL 120
                 45556678******98776666666666666...45554444..13445555666677888888888855.5****************97413344444 PP

                 HHHHHHHHHCHHH CS
    Sugar_tr 402 isllfpiiteaig 414
                 +  + + ++e  g
  CTQ27088.1 121 TPAISTALVELTG 133
                 4444444444444 PP

>> SpoVAB  Stage V sporulation protein AB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.3   8.2e-07    0.0025      40      86 ..      64     107 ..      40     121 .. 0.66
   2 ?   -1.4   0.4      0.95   2.8e+03      28      57 ..     232     271 ..     221     277 .. 0.47

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 8.2e-07
      SpoVAB  40 feiklplgaillallglfaGiFvGclalaLaEvlnvlpilarriklk 86 
                 + + +   +++l+ +++f+G++ G +++aL+Ev+   p+ +r ++++
  CTQ27088.1  64 VAPDFTRMTLVLLWFSFFFGMYNGAMVAALTEVM---PVHVRTVGFS 107
                 23344444788889******************75...7777777665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.95
      SpoVAB  28 ilGavlgnllsvf..........eiklplgaillallglf 57 
                 ++G +l  ++ +            +++p+  i +  +g+f
  CTQ27088.1 232 LVGELLVLFILFQhiqyalagfnLVRIPFRRINTGAIGIF 271
                 4555555555554111111111144455555555566655 PP

>> YrhC  YrhC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.014        41       4      24 ..      62      82 ..      59     117 .. 0.76
   2 ?    7.1   0.0     0.002       5.8      42      65 ..     142     165 ..     134     167 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.014
        YrhC  4 kkkveDYkrFafvLLalsaFL 24
                   + D++r  +vLL +s F+
  CTQ27088.1 62 LTVAPDFTRMTLVLLWFSFFF 82
                556789************996 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.002
        YrhC  42 illgaivvfLllaflflrrskkyq 65 
                 ++ +a ++f++ a+lf+r s+ yq
  CTQ27088.1 142 LMCAALCGFIATALLFVRLSRGYQ 165
                 6999****************9997 PP

>> DUF5413  Family of unknown function (DUF5413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   4.0   1.4e-05     0.041      12      88 ..      42     116 ..      35     166 .. 0.75
   2 ?   -2.1   0.1       1.6   4.6e+03      44      52 ..     241     249 ..     225     258 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
     DUF5413  12 plvggf.llllattyqsgywdetnlaevaklfkvlfktlqysylfgllpalmlaaiddil.lhvrrvgpvlrlllvglv 88 
                 p++ g+ +l l+tt+   +w + +  + +++    ++ l +s++fg+    m+aa+ +++ +hvr vg +l + l+ ++
  CTQ27088.1  42 PVLMGItVLALLTTWPVMHWLTVAP-DFTRM---TLVLLWFSFFFGMYNGAMVAALTEVMpVHVRTVGFSLAFSLATAI 116
                 6666651456889989999975544.44444...455578******************9978******99998877655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.6
     DUF5413  44 vlfktlqys 52 
                 +lf+ +qy+
  CTQ27088.1 241 ILFQHIQYA 249
                 344455553 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014       0.4      19      48 ..     138     172 ..     136     194 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
     DUF4381  19 pGwwlllaalll.llllvlalwllrrrkrn.....r 48 
                 pGwwl+ aal   ++ ++l+++l r ++ +     +
  CTQ27088.1 138 PGWWLMCAALCGfIATALLFVRLSRGYQ-PaesqrK 172
                 9******776665555555555555333.2244322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2497.06
//
Query:       CTQ27089.1  [L=110]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-49  165.5   5.6    2.9e-49  165.3   5.6    1.0  1  YbfN             YbfN-like lipoprotein
  ------ inclusion threshold ------
       0.01   15.6   0.1      0.011   15.5   0.1    1.1  1  Peptidase_M13_N  Peptidase family M13
       0.37   11.1   2.8        1.1    9.6   2.5    1.9  2  CLIP             Regulatory CLIP domain of proteinases


Domain annotation for each model (and alignments):
>> YbfN  YbfN-like lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.3   5.6   4.8e-53   2.9e-49       1      88 []      20     107 ..      20     107 .. 0.99

  Alignments for each domain:
  == domain 1  score: 165.3 bits;  conditional E-value: 4.8e-53
        YbfN   1 ssapkqesrlkeaysacintaeGnpdkveacqtvlnvlkkekahqafaeqesvrvldyqqciearktGndqavkarcdkiWqeirann 88 
                 s+apk++++lk+aysacintaeGnpdk+eacq+vlnvlkk+k+hq+fa+qesvrvldyqqci+a++tGndqavkarcd+iW+eir+nn
  CTQ27089.1  20 SPAPKEDTKLKDAYSACINTAEGNPDKIEACQSVLNVLKKDKQHQQFANQESVRVLDYQQCIQATRTGNDQAVKARCDQIWKEIRSNN 107
                 579************************************************************************************9 PP

>> Peptidase_M13_N  Peptidase family M13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.1   1.8e-06     0.011      51     106 ..      20      82 ..       4     109 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.8e-06
  Peptidase_M13_N  51 kedakavkkaktlYksCmdedaieklglkplldllkelgglds.....nwkd..kfdllella 106
                      ++++k ++k+k++Y++C+++++ +   ++  + +l+ l+++++     n+++    d+++ + 
       CTQ27089.1  20 SPAPKEDTKLKDAYSACINTAEGNPDKIEACQSVLNVLKKDKQhqqfaNQESvrVLDYQQCIQ 82 
                      34778899***************************9999854322232111111334444444 PP

>> CLIP  Regulatory CLIP domain of proteinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.5   0.00018       1.1      13      43 ..      46      81 ..      36      96 .. 0.80
   2 ?   -1.0   0.0      0.37   2.2e+03      16      29 ..      95     108 ..      92     110 .] 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00018
        CLIP 13 pvsqCpallqllrtnll.....sservnflkksqCg 43
                +++ C+++l++l++ ++     ++e v+ l   qC 
  CTQ27089.1 46 KIEACQSVLNVLKKDKQhqqfaNQESVRVLDYQQCI 81
                6899*******9998875677777999999999997 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.37
        CLIP  16 qCpallqllrtnll 29 
                 +C+++ + +r+n++
  CTQ27089.1  95 RCDQIWKEIRSNNT 108
                 69999998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 856.36
//
Query:       CTQ27090.1  [L=150]
Description: DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-48  161.4   0.2      1e-47  161.2   0.2    1.1  1  FUR        Ferric uptake regulator family
     0.0012   18.7   0.0     0.0021   18.0   0.0    1.4  1  HTH_12     Ribonuclease R winged-helix domain
      0.003   17.5   0.1     0.0062   16.5   0.0    1.5  2  PadR       Transcriptional regulator PadR-like family
     0.0066   16.5   3.8       0.18   11.9   0.3    2.4  2  SR1P       SR1 protein
  ------ inclusion threshold ------
      0.034   14.1   0.0        1.4    8.9   0.0    2.5  2  HTH_Crp_2  Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   0.2   2.9e-51     1e-47       1     120 []      10     130 ..      10     130 .. 0.99

  Alignments for each domain:
  == domain 1  score: 161.2 bits;  conditional E-value: 2.9e-51
                 HTTHCHHHHHHHHHHHHHHHSS.SBEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESSSSSEEEEEETTT--EEEE--HHHH CS
         FUR   1 eaglklTkqRekilevleksee.hlsaeevykelkeedpeislaTVYrtLklleeaglvkelefedgesryelakkehhdhlicekCgkviefkddeie 98 
                 +aglk+T +R+kilevl++ ++ h+sae++yk+l + ++ei+laTVYr+L+++++ag+v++++fe+g+s++el++++hhdhlic +Cgkvief+dd+ie
  CTQ27090.1  10 KAGLKVTLPRLKILEVLQEPDNhHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEFSDDSIE 108
                 689************************************************************************************************ PP

                 HHHHHHHHHTT-EEEEEEEEEE CS
         FUR  99 kiqeeiaekegfklvshrlely 120
                  +q+eia ++g++l++h+l+ly
  CTQ27090.1 109 LRQREIASRHGIRLTNHSLYLY 130
                 *******************997 PP

>> HTH_12  Ribonuclease R winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   5.9e-07    0.0021       2      55 ..      21      75 ..      20      85 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5.9e-07
      HTH_12  2 eILkilaesdk.pigakeiaeeLkkrgydigeravRyrLrkleergltrrvgyag 55
                +IL++l+e d+  ++a+ + + L + g++ig  +v + L   ++ g++ r+   g
  CTQ27090.1 21 KILEVLQEPDNhHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEG 75
                69******88537*********************************888876653 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.7e-06    0.0062       1      68 [.      22      85 ..      22      89 .. 0.80
   2 ?   -3.7   0.0       3.4   1.2e+04      10      17 ..     117     124 ..     113     128 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.7e-06
                HHHHHCCS-EEHH...HHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHC CS
        PadR  1 iLalleeqpsyGy...eiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTda 68
                iL++l+e +++ +   ++ k+l +   g +e+  +++Y++L+++ + g+v++++ e    + + +++lT++
  CTQ27090.1 22 ILEVLQEPDNHHVsaeDLYKRLIDM--G-EEIGLATVYRVLNQFDDAGIVTRHNFE----GGKSVFELTQQ 85
                7888888666655122577777777..7.8**********************9886....57899999987 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.4
                 EEHHHHHH CS
        PadR  10 syGyeiik 17 
                 ++G  +++
  CTQ27090.1 117 RHGIRLTN 124
                 67777665 PP

>> SR1P  SR1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.3    0.0049        18       5      18 ..      92     105 ..      90     108 .. 0.82
   2 !   11.9   0.3   5.1e-05      0.18      23      37 .]     128     142 ..     123     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0049
        SR1P   5 vCqtCnatIdhfed 18 
                 +C +C+++I+  +d
  CTQ27090.1  92 ICLDCGKVIEFSDD 105
                 9********96554 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 5.1e-05
        SR1P  23 tLYgtCnqceCkkae 37 
                  LYg C +++C+++e
  CTQ27090.1 128 YLYGHCAEGDCREDE 142
                 59**********986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0004       1.4      36      54 ..      53      71 ..      45      86 .. 0.86
   2 ?    2.6   0.0     0.037   1.3e+02      19      34 ..     106     121 ..      88     126 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0004
                HHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 36 etvsrilseLkreglisrg 54
                 tv r+l+++ ++g+++r+
  CTQ27090.1 53 ATVYRVLNQFDDAGIVTRH 71
                59**************964 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.037
                 EEEHHHHHHHHHTTSS CS
   HTH_Crp_2  19 elpltqeelAsmlGlt 34 
                  + l q+e+As+ G++
  CTQ27090.1 106 SIELRQREIASRHGIR 121
                 4788999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1143.65
//
Query:       CTQ27091.1  [L=176]
Description: flavodoxin 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-34  116.9   0.0    9.6e-34  116.6   0.0    1.1  1  Flavodoxin_1  Flavodoxin
    1.9e-10   40.7   0.0    2.2e-10   40.5   0.0    1.2  1  Flavodoxin_3  Flavodoxin domain
    2.6e-06   27.7   0.0    3.9e-06   27.2   0.0    1.3  1  Flavodoxin_5  Flavodoxin domain
  ------ inclusion threshold ------
      0.065   13.0   0.0         12    5.6   0.0    2.8  3  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   0.0   2.1e-37   9.6e-34       1     143 []       6     160 ..       6     160 .. 0.96

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 2.1e-37
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   i++gS+tGnte++Ak ++++lg +++ adv+++++ +  ++++e++++ll++++T++ G+++       +d+ +++ ++le++d++g+ +a+fg+Gd
    CTQ27091.1   6 IFFGSDTGNTENIAKMIQKQLG-KDV-ADVHDIAKSS--KEDLEAHDILLLGIPTWYYGEAQ-------CDWDDFF-PTLEEIDFNGKLVALFGCGD 90 
                   8*********************.565.6777777777..68*********************.......*******.99****************** PP

                   TTSSS..TTHHHHHHHHHHHHTTCEEES.....................SSEEEETTST.HGHHHHHHHH CS
  Flavodoxin_1  98 sayen..FcaagkkldekleelGaerll.....................kllegdednq.egqeeafrkW 143
                   ++ +   Fc+a +++ +++e +Ga++++                     ++l++ded+q e++ e+++kW
    CTQ27091.1  91 QEDYAeyFCDALGTIRDIIEPRGATIVGhwptagyhfeaskgladddhfVGLAIDEDRQpELTNERVEKW 160
                   *************************************************99******************* PP

>> Flavodoxin_3  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   4.9e-14   2.2e-10       2     111 ..       6     124 ..       5     164 .. 0.86

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 4.9e-14
  Flavodoxin_3   2 ilysSltGNTkkvAeaikealee.ekeivsikeakek.veeadvvfvGfwv.dkgtadeealkfletlk.....nkkillfgTlGagkdseyakkil 90 
                   i++ S tGNT+++A+ i+++l +   ++++i++ +++ +e+ d++++G+ + + g+a+ +  +f  tl+     +k ++lfg    ++  ey+ + l
    CTQ27091.1   6 IFFGSDTGNTENIAKMIQKQLGKdVADVHDIAKSSKEdLEAHDILLLGIPTwYYGEAQCDWDDFFPTLEeidfnGKLVALFGCGDQEDYAEYFCDAL 102
                   899*******************98899999988877779999******85535688888888887776433343899****999999999******* PP

  Flavodoxin_3  91 ekvkallekn.nevlgeflcqG 111
                     ++ ++e    +++g++ + G
    CTQ27091.1 103 GTIRDIIEPRgATIVGHWPTAG 124
                   *******999899999987777 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   8.7e-10   3.9e-06       2      84 ..       6      89 ..       5     104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 8.7e-10
  Flavodoxin_5  2 ilYsSrdGqTkkiaeriaeelreegelvdved.vekesedlesydavvigasv.yygkllpelakFvekh.reaLstkpvalfsvs 84
                  i++ S +G+T+ ia+ i+++l++   ++dv+d ++ ++edle  d  ++g +  yyg+ +++ ++F  +  + + + k valf ++
    CTQ27091.1  6 IFFGSDTGNTENIAKMIQKQLGKD--VADVHDiAKSSKEDLEAHDILLLGIPTwYYGEAQCDWDDFFPTLeEIDFNGKLVALFGCG 89
                  89********************66..6666663335788************99789********9987753778999999999875 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0027        12       3      35 ..       4      34 ..       1      41 [. 0.80
   2 ?    5.5   0.0    0.0029        13      60      86 ..      34      60 ..      30     127 .. 0.74
   3 ?   -3.7   0.0         2   8.8e+03      60      71 ..     154     165 ..     144     170 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0027
                EEEEES--STT-HHHHHHHHHHCCT-T.T-CEE CS
     FMN_red  3 ilvisGSlrkgsntrklaewaaealkeagaeve 35
                i +++GS    +nt+ +a++++++l ++ a+v+
  CTQ27091.1  4 IGIFFGSDT--GNTENIAKMIQKQLGKDVADVH 34
                445599985..**************88877775 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0029
                SHHHHHHHHHHHH-SCEEEEEEECTTC CS
     FMN_red 60 sddvaellekiaaadaliivtPeYngs 86
                +d +++ +e ++a+d+l+++ P++ ++
  CTQ27091.1 34 HDIAKSSKEDLEAHDILLLGIPTWYYG 60
                5677888999*************9886 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2
                 SHHHHHHHHHHH CS
     FMN_red  60 sddvaellekia 71 
                 ++ v+++++++a
  CTQ27091.1 154 NERVEKWVKQVA 165
                 344444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1385.86
//
Query:       CTQ27092.1  [L=131]
Description: Ribbon-helix-helix protein, CopG family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-09   37.7   0.7    2.8e-09   36.6   0.7    1.6  1  RHH_1     Ribbon-helix-helix protein, copG family
  ------ inclusion threshold ------
      0.079   12.9   0.1       0.18   11.7   0.1    1.6  1  RHH_4     Ribbon-helix-helix domain


Domain annotation for each model (and alignments):
>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.7   3.1e-13   2.8e-09       1      37 [.      86     122 ..      86     123 .. 0.95

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 3.1e-13
                 EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHH CS
       RHH_1   1 rvsirldeellerLdelarrrgrSrSelIReAlreyl 37 
                 rv+++l ++ +++L+ela++r++SrS+lI+e+l+  l
  CTQ27092.1  86 RVELKLNADAVDALNELAEARNMSRSDLIEEMLMTQL 122
                 899******************************9876 PP

>> RHH_4  Ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1     2e-05      0.18      16      43 ..      90     117 ..      81     125 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2e-05
                 EEEHHHHHHHHHHHHHTT--HHHHHHHH CS
       RHH_4  16 rLEpafWdaLeeiArregltvnaLiaei 43 
                 +L +   daL+e+A++++++ ++Li+e+
  CTQ27092.1  90 KLNADAVDALNELAEARNMSRSDLIEEM 117
                 56667779*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1131.43
//
Query:       CTQ27093.1  [L=290]
Description: putative esterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-21   75.5   0.6    3.5e-17   62.9   0.2    2.2  2  Abhydrolase_1    alpha/beta hydrolase fold
    7.9e-18   65.9   9.5    9.5e-18   65.6   9.5    1.1  1  Abhydrolase_6    Alpha/beta hydrolase family
    1.4e-08   34.3   0.3    5.7e-07   29.0   0.3    2.2  2  Hydrolase_4      Serine aminopeptidase, S33
    7.6e-08   32.3   0.0    0.00021   21.1   0.0    2.2  2  PGAP1            PGAP1-like protein
     0.0023   18.1   0.0     0.0038   17.4   0.0    1.5  1  Thioesterase     Thioesterase domain
     0.0025   17.3   0.0     0.0051   16.3   0.0    1.4  1  DUF676           Putative serine esterase (DUF676)
  ------ inclusion threshold ------
      0.012   15.0   0.0       0.18   11.1   0.0    2.1  2  DUF915           Alpha/beta hydrolase of unknown function (DU
      0.023   13.4   0.0       0.53    8.9   0.0    2.1  2  Ndr              Ndr family
      0.069   12.8   0.0      0.099   12.3   0.0    1.4  1  Esterase         Putative esterase
       0.14   12.0   0.0       0.29   11.0   0.0    1.5  2  Lipase_3         Lipase (class 3)
       0.16   10.9   0.0       0.23   10.3   0.0    1.2  1  Chlorophyllase2  Chlorophyllase enzyme


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.2   2.1e-20   3.5e-17       2     107 ..      51     150 ..      50     187 .. 0.88
   2 !   11.3   0.0   0.00012       0.2     213     257 .]     230     274 ..     196     274 .. 0.88

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 2.1e-20
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                    ++v++hGl gs+d+     la++L   ++d++ +D+r++g S+++p+    +y+   +a dl   lda+ +++ t +GhSmGG  ++a+ a++per
     CTQ27093.1  51 PIVLVHGLFGSLDNLGI--LARDLIA-DHDIVQVDMRNHGLSPRSPE---MTYPA--MAQDLLDTLDAHQIERATFIGHSMGGKAVMALTALAPER 138
                    89***********8777..7777776.*******************9...67888..*************************************** PP

                    EEEEEEESE..C CS
  Abhydrolase_1  98 Vkalvllga..i 107
                    +++lv+++   +
     CTQ27093.1 139 ISGLVAIDIapV 150
                    *******99663 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00012
                    EEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 213 ptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlaflegp 257
                    pt +i g + p+v++ + + l +++p++r +vi++agH+++ e+p
     CTQ27093.1 230 PTQFIPGGNSPYVTDAYRDALLAQFPQARAHVIAGAGHWVHAEKP 274
                    8999999999*****99999999*****************99876 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   9.5   5.8e-21   9.5e-18       1     219 [.      52     279 ..      52     280 .. 0.67

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 5.8e-21
                    EEEE--GC.....GCHHHH...HHHHCCT..CEEEEE--TTST.S-GGCS--HHH.CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC... CS
  Abhydrolase_6   1 vlllHGagssassWlvapL...aallaag..vhvlapDlpGhG.rsdpppldled.ladlaalldelaagggpvvlvGHSlGGalalaaapla..l 87 
                    ++l+HG+++s      ++L   a+ l a+  +  + +D ++hG ++ +p  ++++ ++dl+++ld+      ++  +GHS+GG  ++a+ +la  +
     CTQ27093.1  52 IVLVHGLFGS-----LDNLgilARDLIADhdI--VQVDMRNHGlSPRSPEMTYPAmAQDLLDTLDAHQ--IERATFIGHSMGGKAVMALTALApeR 138
                    8*****4432.....22444454444555255..99******96666666777776799999999996..9999********87666655566668 PP

                    .EE.EEES-..----TTTS----TTHHHHHH...TT-C.........CCCHCCH....S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHH CS
  Abhydrolase_6  88 vvg.vlldppptalpagllaaalelllalla...llrl.........lawlsre....plprlfladedadaawrarlarlaallaglgllpaaaw 166
                    ++g v++d    a+ +  +++  e+++a +a   ++++          + l++e    +l ++f++      +wr ++  l ++ ++        w
     CTQ27093.1 139 ISGlVAIDI---APVDYHVRRHDEIFAAIRAvseSAAStrqqaaqvmREHLQEEgviqFLLKSFVD-----GDWRFNVPVLWDQYPHIV-----GW 221
                    888977777...444444444444444333322222223333322322222333566655569999.....***********9999777.....66 PP

                    TT-TTGC...EEE.CTT-CHHHHCHHCCCH..STTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 167 adlpvpl...lvl.ggeDplvprllerlla..qagarlpvvlpgaGHlphleepdevae 219
                    +++p++      + gg+ p v + ++++l    + ar  +v++gaGH++h e+p++v +
     CTQ27093.1 222 ETIPAWPhptQFIpGGNSPYVTDAYRDALLaqFPQARA-HVIAGAGHWVHAEKPEAVLR 279
                    66666663335667899998887777777769999999.****************9976 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.3   3.5e-10   5.7e-07       6     106 ..      51     144 ..      46     189 .. 0.83
   2 ?    3.2   0.0     0.028        45     188     238 ..     225     273 ..     219     274 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 3.5e-10
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvag 103
                   +vlvHGl  + +    la++L a + +++ +D r hG s+  r     +  + +Dl   ++     h+ ++ + +GhSmGG  ++++++  p++++g
   CTQ27093.1  51 PIVLVHGLFGSLDNLGILARDLIA-DHDIVQVDMRNHGLSP--RSPEMTYPAMAQDLLDTLD----AHQIERATFIGHSMGGKAVMALTALAPERISG 141
                  69********************86.7899***********5..4445678888888866653....445667899*********************** PP

  Hydrolase_4 104 lil 106
                  l+ 
   CTQ27093.1 142 LVA 144
                  996 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.028
  Hydrolase_4 188 akitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHellnEp 238
                  +++  P++++ G++ + v  + + +l+++ +  + + ++++g+ H ++ E+
   CTQ27093.1 225 PAWPHPTQFIPGGNSPYVTDAYRDALLAQFP--QARAHVIAGAGHWVHAEK 273
                  667789************************9..79***********99997 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00054      0.89       5      41 ..      50      86 ..      47     101 .. 0.85
   2 !   21.1   0.0   1.3e-07   0.00021      88     155 ..     111     172 ..      99     206 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00054
       PGAP1  5 ipVlFvpGnagsykqvrslAseaaeayqelrkllknq 41
                 p+++v+G++gs++++  lA++   ++   + +++n+
  CTQ27093.1 50 SPIVLVHGLFGSLDNLGILARDLIADHDIVQVDMRNH 86
                69*******************9988777776666665 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.3e-07
       PGAP1  88 keptsviliGHSmGGivaraaltlknyikqsvntiltla.sPhalpplsfdkdilklyervnefwkkel 155
                 +++++   iGHSmGG+   a++ l +++++ ++ ++ ++ +P+++ + ++d+    +++++ ++ +++ 
  CTQ27093.1 111 HQIERATFIGHSMGGK---AVMALTALAPERISGLVAIDiAPVDYHVRRHDE----IFAAIRAVSESAA 172
                 56677789*******7...578999999***********9***********4....3333333333333 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.3e-06    0.0038       2      85 ..      51     133 ..      50     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.3e-06
                   EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST.SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHH CS
  Thioesterase   2 pLflfppagGsasvfrslasklsdpvvevlavqlpgre.rdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevAr 85 
                   p++l+++ +Gs      la+ l ++  +++ v  + ++ ++ +p  +  ++a+ ++++l ++q e   +++GhS+Gg   +++++
    CTQ27093.1  51 PIVLVHGLFGSLDNLGILARDLIAD-HDIVQVDMRNHGlSPRSPEMTYPAMAQDLLDTLDAHQIE-RATFIGHSMGGKAVMALTA 133
                   7899999999999999999999998.66666666666668999**********************.899*******976666665 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.1e-06    0.0051       8      99 ..      52     134 ..      47     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.1e-06
      DUF676   8 vVlvHGlqgnsaDlelikeqlekikeklpeekieflmsennesktfkgidvlgerlaeevlevvkkkkdknkkiSfvghSlGgliaraaiak 99 
                 +VlvHGl+g+ ++l +++  l +       +  ++   ++n+  +    ++    +a+ +l+++++ + +  +  f+ghS+Gg  + a  a+
  CTQ27093.1  52 IVLVHGLFGSLDNLGILARDLIA-------DHDIVQVDMRNHGLSPRSPEMTYPAMAQDLLDTLDAHQIE--RATFIGHSMGGKAVMALTAL 134
                 79*******************99.......23355666778888888888888899*********99999..9**********876555444 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.082   1.3e+02       4      35 ..      42      73 ..      39      87 .. 0.80
   2 ?   11.1   0.0   0.00011      0.18      90     118 ..     102     129 ..      78     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.082
      DUF915  4 lksekkkeiPtifihGyggtaeslnemvkqle 35
                ++++ ++  P++++hG  g+   l+ ++++l 
  CTQ27093.1 42 SAQNPHNHSPIVLVHGLFGSLDNLGILARDLI 73
                567778999*********99999988888876 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00011
      DUF915  90 kkvlseLkkkYnikkfnavGhSmGglalt 118
                 +  l+ L    +i+++ ++GhSmGg a++
  CTQ27093.1 102 QDLLDTLD-AHQIERATFIGHSMGGKAVM 129
                 55555665.469*************9886 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00032      0.53      83     134 ..      98     149 ..      81     158 .. 0.85
   2 ?    2.0   0.0     0.041        67     225     276 ..     234     285 ..     223     288 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00032
                 HHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES--- CS
         Ndr  83 ddladqllavldhfklksviglGvgaGAyilarfalkhperveglvLinits 134
                   +a++ll  ld  +++ +  +G   G   ++  ++  per++glv i+i +
  CTQ27093.1  98 PAMAQDLLDTLDAHQIERATFIGHSMGGKAVMALTALAPERISGLVAIDIAP 149
                 45799******************999888777777778**********9987 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.041
                 EEETTSTTHHHHHHHHHHS-TTTEEEEEETT-TT-HHHH-HHHHHHHHHHHH CS
         Ndr 225 vvGdkspfvdevvevnskldkkkttllkvadsgglvleeqPdklaeslklfl 276
                 + G +sp+v ++++ +   +  ++    +a +g  v +e+P+++++++  +l
  CTQ27093.1 234 IPGGNSPYVTDAYRDALLAQFPQARAHVIAGAGHWVHAEKPEAVLRAIRRYL 285
                 56888888888888777666677777789999***************98776 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.1e-05     0.099      97     139 ..      99     138 ..      77     229 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.1e-05
                 HHHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTT CS
    Esterase  97 fltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdr 139
                 +++q Ll++lda+   +++    +G+SmGG + + l + +p+r
  CTQ27093.1  99 AMAQDLLDTLDAHQIERAT---FIGHSMGGKAVMALTALAPER 138
                 578999******9988888...9**********9999999987 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018      0.29      31      78 ..      51     127 ..      22     140 .. 0.70
   2 ?   -3.2   0.0       4.4   7.1e+03      41      61 ..     169     188 ..     145     195 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
                 TT-EEEHHHHHHHH.............................S-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHH CS
    Lipase_3  31 eggkvhsgfleaye.............................eslreqvlkelkrllekypeysivvtGHSLGgal 78 
                   + vh  f ++ +                             e ++ ++ ++l + l++++  + ++ GHS+Gg  
  CTQ27093.1  51 PIVLVHGLFGSLDNlgilardliadhdivqvdmrnhglsprspEMTYPAMAQDLLDTLDAHQIERATFIGHSMGGKA 127
                 566666666666666677777777777777777777777777778899999***********************942 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.4
                 HHHHS-HHHHHHHHHHHHHHH CS
    Lipase_3  41 eayeeslreqvlkelkrllek 61 
                 e++  s+r+q  + +++ l++
  CTQ27093.1 169 ESAA-STRQQAAQVMREHLQE 188
                 3334.6666777777666665 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00014      0.23      88     132 ..     112     155 ..      99     202 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
  Chlorophyllase2  88 dlsklalsgHSrGgktafalalgkaktslkfsaligvd..Pvagask 132
                      ++++ +  gHS Ggk+++al+    +    +s l+++d  Pv++  +
       CTQ27093.1 112 QIERATFIGHSMGGKAVMALTALAPE---RISGLVAIDiaPVDYHVR 155
                      57788899***********9877777...677777766559998443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.36
# Mc/sec: 2397.55
//
Query:       CTQ27094.1  [L=230]
Description: Negative modulator of initiation of replication [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-49  165.5   0.0    4.4e-49  165.0   0.0    1.2  1  SeqA      SeqA protein C-terminal domain
    1.6e-23   81.7   0.6    2.8e-23   80.9   0.6    1.4  1  SeqA_N    SeqA protein N-terminal domain


Domain annotation for each model (and alignments):
>> SeqA  SeqA protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.0   0.0     5e-53   4.4e-49       2     110 ..     120     228 ..     119     229 .. 0.98

  Alignments for each domain:
  == domain 1  score: 165.0 bits;  conditional E-value: 5e-53
        SeqA   2 kveelleseefaeekkavnrFlliLsalyradpeaFakatekvkGrtRvYfakdeetllasgkstkpkqipetpfWVitNnntarKrlileevmesmel 100
                 +++e+l s+e+ae+k+avnrF+l+L++ly++d++aFa+ate+++GrtRvYfa+d +tll+sg++tkpkq+p tp+WVitN+nt+rK +++e++m+sm++
  CTQ27094.1 120 AMREMLLSDEYAEQKRAVNRFMLVLTTLYSLDSKAFAEATESLHGRTRVYFAEDARTLLKSGNQTKPKQVPGTPWWVITNTNTGRKCSMIEHIMQSMQF 218
                 799************************************************************************************************ PP

        SeqA 101 peeliekvke 110
                 p+eliekv++
  CTQ27094.1 219 PAELIEKVCG 228
                 ********97 PP

>> SeqA_N  SeqA protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.6   3.1e-27   2.8e-23       1      35 [.      49      83 ..      49      84 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 3.1e-27
      SeqA_N  1 MKtIevDeeLYrYIasntqaiGESaSdILRRLLnL 35
                MKtIevD+eLYrYIas+t +iGESaSdILRR+L++
  CTQ27094.1 49 MKTIEVDDELYRYIASHTLHIGESASDILRRMLKF 83
                *********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1974.03
//
Query:       CTQ27095.1  [L=546]
Description: phosphoglucomutase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      9e-36  122.6   0.1    2.5e-35  121.2   0.1    1.8  1  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    5.3e-31  107.2   0.0    1.1e-30  106.2   0.0    1.6  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    9.5e-21   74.4   0.0    2.9e-20   72.8   0.0    1.9  1  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
    1.3e-07   31.7   0.0    3.6e-07   30.3   0.0    1.7  1  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.1   5.5e-39   2.5e-35       2     134 ..      40     180 ..      39     183 .. 0.97

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 5.5e-39
                 GGBBTTCEEEECCHCTBSCCHHHHHHHHHHHHCHHCSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE...EB-HHHHHHHHHHCC.....EC CS
   PGM_PMM_I   2 qkfgtsGlRgkvgegeltpelveklgqaiaeylkaeakkkkvvvGrDtRvssrelaealaaglaanGvevillg...llptPavsfairklk.....ad 92 
                 +kfgtsG+Rg++ ++ +++ ++++++qaiae  ++++ +++ +vG+Dt++ s+ +  +++++l+anGv+vi+ +   ++ptPavs ai  ++     ++
  CTQ27095.1  40 VKFGTSGHRGSAARHNFNEPHILAIAQAIAEDRAKNGITGPCYVGKDTHALSEPAFISVLEVLTANGVDVIVQEnngFTPTPAVSNAILVHNkkggpLA 138
                 69***********************************************************************999*************99999***9* PP

                 EEEEE--TTS-TTCCCEEEEETTTCE--CHHHHHHHHHHCCT CS
   PGM_PMM_I  93 agimitaSHnppeyngiKvylsnGgpispeveekIeaiieke 134
                 +gi+it+SHnppe+ giK++++nGgp++++v++ +e+++++ 
  CTQ27095.1 139 DGIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVENRANEL 180
                 *************************************99975 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.0   2.4e-34   1.1e-30       1     114 []     320     440 ..     320     440 .. 0.97

  Alignments for each domain:
  == domain 1  score: 106.2 bits;  conditional E-value: 2.4e-34
                  HHHHHHHHHHHHHHCH..CSTTTCEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETTCEEEETTT.....BSS--HHHHHHH CS
  PGM_PMM_III   1 dgdqllallakyllee..klkpgagvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeSghiiflde.....attkDGilaall 91 
                  +++++la++++yl+++  ++ ++ +v kt+++s +++rv+++lg+klve++vG+k++++ + ++++ +GgEeS++++fl++     +t+kDGi+++ll
   CTQ27095.1 320 NPNHYLAVAINYLFQHrpQWGKEVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFdgtpwSTDKDGIIMCLL 417
                  68***********9999*9999999********************************************************99999999********* PP

                  HHHHHHHHTS-HHHHHHHHHHHH CS
  PGM_PMM_III  92 vleilaetgkslselleellkky 114
                  ++ei+a tgk+++e ++el +++
   CTQ27095.1 418 AAEITAVTGKNPQEHYNELAERF 440
                  *****************998876 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   6.5e-24   2.9e-20       2     103 .]     210     317 ..     209     317 .. 0.98

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 6.5e-24
                 HHHHHGGGTS-HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-EEEES-----TT-TT......SS----TT-TTTTHHHHGGGGG-SEEEEE-TTS- CS
  PGM_PMM_II   2 aYiealkekvdseaikksglkvvidplhGaggeilkellkelgvdvvelnaepdpdfpt......kapnpeekealkllielvkkegadlglafDgDaD 94 
                 ++ie+l+++vd++ai+k+gl++ +dpl+G+g e++k++ ++++++++ +n++ d++f        +a+++++++++++++ l+ ++++dl++a+D+D+D
  CTQ27095.1 210 PFIEGLADIVDMAAIQKAGLTLGVDPLGGSGIEYWKRIGEHYKLNLTIVNDQVDQTFRFmhldkdGAIRMDCSSECAMAGLLALRDKFDLAFANDPDYD 308
                 69********************************************************999999*********************************** PP

                 BEEEEETTE CS
  PGM_PMM_II  95 RlgvvderG 103
                 R+g+v++ G
  CTQ27095.1 309 RHGIVTPAG 317
                 *****9987 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0     8e-11   3.6e-07      20      72 ..     486     538 ..     466     540 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 8e-11
                 CTTHHCCCCCCCCGCCEEEE.EEEETTCCEEEEEEEES.SHHHHHHHHHHHHHH CS
  PGM_PMM_IV  20 lkvasikeglkilledGrrlavRpSGTepllrvyvEak.sdeelarlaeevael 72 
                  +++  ++glk+ + +G+++  RpSGTe+  ++y+E+   +e+ + +++e +e+
  CTQ27095.1 486 PGNGAAIGGLKVMTDNGWFA-ARPSGTEDAYKIYCESFlGEEHRKLIEKEAVEI 538
                 34445789************.*****************8888888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.35
# Mc/sec: 4667.45
//
Query:       CTQ27096.1  [L=145]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1121.84
//
Query:       CTQ27097.1  [L=225]
Description: DNA-binding response regulator in two-component regulatory system with KdpD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-28   99.2   0.0    2.1e-28   98.7   0.0    1.2  1  Response_reg  Response regulator receiver domain
    2.1e-22   78.9   0.0    4.8e-22   77.8   0.0    1.6  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
      0.014   15.2   0.1       0.05   13.5   0.1    1.9  1  MarR_2        MarR family


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   3.6e-32   2.1e-28       1     111 [.       4     112 ..       4     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 3.6e-32
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vli++D++++r+ lr++le +g+ +v eae+ +  l  + ++k+dl +lD+ +p+ dG+++++ +r+ + ++p+i+l+a+see d+++al+agadd+
    CTQ27097.1   4 VLIIEDEHAIRRFLRTALEADGM-RVFEAETLQRGLIEAATRKPDLAILDLGLPDGDGIDFIRDLRQWS-QMPIIVLSARSEEHDKIAALDAGADDY 98 
                   8**********************.*******************************************88.*************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   lsKpf + eL ++l
    CTQ27097.1  99 LSKPFGIGELQARL 112
                   **********9987 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   8.1e-26   4.8e-22       2      77 .]     148     223 ..     147     223 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 8.1e-26
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ee++ltp ef+lL++Ll+npg+v+++ +Ll++vwg +    ++ ++ ++ +LR+kLe+d++ p+++ t  g+GYr+
   CTQ27097.1 148 EEIHLTPIEFRLLAALLNNPGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEADPARPQHLLTETGIGYRF 223
                  78************************************************************************97 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   8.4e-06      0.05       3      27 ..     152     176 ..     151     180 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.4e-06
                 --HHHHHHHHHHHCTTTSEEEHHHH CS
      MarR_2   3 ltpaqarvLaaLgrrpgrdltvgel 27 
                 ltp ++r+LaaL ++pg+ lt+++l
  CTQ27097.1 152 LTPIEFRLLAALLNNPGKVLTQRQL 176
                 89***************999*9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1812.15
//
Query:       CTQ27098.1  [L=895]
Description: fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein; sensory histidine kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-96  322.0   0.0    2.1e-96  321.4   0.0    1.3  1  KdpD         Osmosensitive K+ channel His kinase sensor domai
      2e-28   98.3  14.3      2e-28   98.3  14.3    1.8  2  DUF4118      Domain of unknown function (DUF4118)
    1.5e-22   80.2   0.0    2.6e-22   79.4   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.7e-10   40.7   1.5    1.7e-10   40.7   1.5    2.3  2  HisKA        His Kinase A (phospho-acceptor) domain
    4.3e-07   30.3   0.0    1.1e-06   29.0   0.0    1.8  1  GAF_3        GAF domain
    0.00012   22.6   0.6     0.0027   18.2   0.6    2.7  1  Usp          Universal stress protein family
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.031   14.2   0.0    1.5  1  HATPase_c_2  Histidine kinase-like ATPase domain
      0.041   13.6   0.0       0.12   12.1   0.0    1.7  1  AAA_30       AAA domain


Domain annotation for each model (and alignments):
>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.4   0.0  9.2e-100   2.1e-96       1     210 []      21     230 ..      21     230 .. 1.00

  Alignments for each domain:
  == domain 1  score: 321.4 bits;  conditional E-value: 9.2e-100
        KdpD   1 krGrlkiflGaapGvGktyamLeeaqelkeegvdvviglvethgrketeallegleviprkeveykgkeleeldldailarkpevvlvDelahtnapgs 99 
                 +rG+lk+f+Ga++GvGkt+amL+eaq+l+++g d++ig+ ethgrket+a+l+gl ++p+++++++g+ + e+dlda+lar+p+++lvDelah+napgs
  CTQ27098.1  21 HRGKLKVFFGACAGVGKTWAMLAEAQRLRAQGLDILIGVAETHGRKETAAMLQGLSTLPPRRLAHRGRYVYEFDLDAALARRPALILVDELAHSNAPGS 119
                 59************************************************************************************************* PP

        KdpD 100 rhekryqdveelLeagidVittvnvqhleslndvvekitgvrvretvPdevleeAdevelvDltpeeLlerLkegkvykkekaeralknffrkgnLtaL 198
                 rh+kr+qdv+elLeagidV+ttvnvqhleslndvv+ itgv+vretvPd ++++Ad+v+lvDl+p++L++rL+egkvy   +aera++nffrkgnL+aL
  CTQ27098.1 120 RHPKRWQDVDELLEAGIDVFTTVNVQHLESLNDVVSGITGVQVRETVPDPFFDAADDVVLVDLPPDDLRQRLNEGKVYIGGQAERAIENFFRKGNLIAL 218
                 *************************************************************************************************** PP

        KdpD 199 RelaLrrvAdrv 210
                 RelaLrr+Adrv
  CTQ27098.1 219 RELALRRTADRV 230
                 **********98 PP

>> DUF4118  Domain of unknown function (DUF4118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3  14.3   8.7e-32     2e-28       2     106 ..     403     507 ..     402     508 .. 0.96
   2 ?   -2.6   0.1       2.1   4.7e+03      70     104 ..     623     657 ..     618     660 .. 0.61

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 8.7e-32
     DUF4118   2 llavlllalatllallldkllslanivllfllavllvallgglgpgllaallsvllfnyfftpPyftltiadpeylltlvvflvvallvstlvararrq 100
                 ++av+l+a++tl+a+ +   ++ an+v+l+ll+v+l+al++g++p++la+++ v+ f+ ff++P+ tl+++d +yllt++v+l+v+ll+++l+a +r q
  CTQ27098.1 403 AVAVALCAIITLVAMQWLMAFEAANLVMLYLLGVVLIALVYGRWPSVLATVINVISFDLFFVAPRGTLAVSDVQYLLTFGVMLTVGLLIGNLTAGVRYQ 501
                 78999******999999666889**************************************************************************** PP

     DUF4118 101 arqare 106
                 ar ar 
  CTQ27098.1 502 ARVARY 507
                 ***986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.1
     DUF4118  70 tiadpeylltlvvflvvallvstlvararrqarqa 104
                  i +++ ll+ +++lv++ l     ++  +qar  
  CTQ27098.1 623 MIPEQQRLLETFTLLVASALERLTLTASEEQARLT 657
                 56666777777777666666655555566666655 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0   1.2e-25   2.6e-22       4     111 ..     777     883 ..     774     884 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 1.2e-25
                 HHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEE CS
   HATPase_c   4 krLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGt 102
                 + ++++++nl++Na k+a+   +i ++ +a+  +l+++v+DnG+Gip  + + +f+kf + +++++   g+GlGl+i++++v+ +gG+i+ +++p++G 
  CTQ27098.1 777 PLFERVLINLLENAHKYAGARASIGIRAEADARQLSLEVWDNGPGIPAGQEQTIFDKFAR-GNKESAIPGVGLGLAICQAIVDVHGGTISASNRPEGGA 874
                 56789************99999*******9889***************************.9999999******************************* PP

                 EEEEEEESS CS
   HATPase_c 103 tftftlple 111
                 +f++tlp e
  CTQ27098.1 875 SFRVTLPGE 883
                 ******965 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       3.5   7.9e+03      18      39 ..     633     655 ..     633     659 .. 0.68
   2 !   40.7   1.5   7.8e-14   1.7e-10       3      67 .]     665     730 ..     663     730 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHC...T-HSSCHH CS
       HisKA  18 sailgnaeaLkre.gklteelke 39 
                 ++ l+ a+aL+r    ++ee+++
  CTQ27098.1 633 TFTLLVASALERLtLTASEEQAR 655
                 57788899998876444566665 PP

  == domain 2  score: 40.7 bits;  conditional E-value: 7.8e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC...T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkre.gklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 + +la ++H+LrtPL+++ g ae+L  + ++   + + + + i++++   ++lv++lLd++ri++g
  CTQ27098.1 665 NSLLAALSHDLRTPLTVLFGQAEILTLDlASEGSKHAPQANEIRQHVLNTTRLVNNLLDMARIQSG 730
                 679**********************4433344455555*************************987 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   5.1e-10   1.1e-06       3     129 .]     529     644 ..     527     644 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 5.1e-10
       GAF_3   3 dellekllkllvkllgaevgalllldedgnklqvaagwdgkpalsesldedsalarralssgevvsepsfaeedglpdraalavPLvagrqviGvlala 101
                 ++++ ++ ++++++++a ++ lll d++g+ l  +++      l    + d+a ar+ ++ g +    ++a++d+lp+ ++ ++PL++  ++ G+l+++
  CTQ27098.1 529 QDIATTSERFIASTFQA-RSQLLLPDAQGKLLPLTHQP----GL---TPWDDAIARWSFDKGLP----AGAGTDTLPGVPYQILPLKSAARTWGLLVVE 615
                 56666666666667776.34555666665555444433....22...12457777788777765....5789****************99********* PP

       GAF_3 102 stkpra.fdaedlelleslArqiataier 129
                   + r+ + +e+++lle+++ ++a+a+er
  CTQ27098.1 616 PENLRQlMIPEQQRLLETFTLLVASALER 644
                 99999978********************8 PP

>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.6   1.2e-06    0.0027       3     134 ..     251     365 ..     249     371 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.2e-06
                 SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHH CS
         Usp   3 krIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaee 101
                 + Il+++ +++ s+k+++ A++la++ g+  ++++v  p+        +++   +    +               +  +++ ++ + +   + l +a+e
  CTQ27098.1 251 DAILLCIGHNTGSEKLVRAAARLAARLGSVWHAVYVETPSLHRLPEGRRRAILAALRLAQ---------------ELGAETATLSDPSEEKAVLHYARE 334
                 679************************999999998655444433333333333333333...............346678888888888888999999 PP

                 TTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTS CS
         Usp 102 edadliVvGsrgrsglsrlllGSvseyvlrhap 134
                 ++   iV+G+ ++++  +     ++++++rhap
  CTQ27098.1 335 HNLGKIVIGRQRKRRWWD--RSGFADRLARHAP 365
                 999999999988444444..5889999999997 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.4e-05     0.031      46     110 ..     791     858 ..     782     870 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
  HATPase_c_2  46 hayleapegpvevrlesdeealtvevaDsGpgfdpe...tlpdpteeep.keslkegGrGlalikglvD 110
                  h y +a+ +++ +r+e d+++l +ev+D+Gpg ++    t+ d+ + ++ +   +  G+Gla+ +++vD
   CTQ27098.1 791 HKYAGAR-ASIGIRAEADARQLSLEVWDNGPGIPAGqeqTIFDKFARGNkESAIPGVGLGLAICQAIVD 858
                  4455445.889********************95544122444554444434444555999999999998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.4e-05      0.12      22      98 ..      28     112 ..      13     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.4e-05
      AAA_30  22 vltGpAGtGKttalkalreaweaaggrv.iglAptgkaAkvLaeelgieastiakllkrlk.......grarlepg.tllivDEag 98 
                 +  + AG GKt a+ a ++ ++a+g ++ ig+A t+   ++ a   g+ +    +l +r +       + a+l+++  l++vDE +
  CTQ27098.1  28 FFGACAGVGKTWAMLAEAQRLRAQGLDIlIGVAETHGRKETAAMLQGLSTLPPRRLAHRGRyvyefdlD-AALARRpALILVDELA 112
                 44567*******************9766269****9877777766677777777777777788889875.4555666*******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (895 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 5978.64
//
Query:       CTQ27099.1  [L=191]
Description: potassium translocating ATPase, subunit C [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-68  228.6   0.4    5.4e-68  228.4   0.4    1.0  1  KdpC           K+-transporting ATPase, c chain
  ------ inclusion threshold ------
      0.018   15.5   1.6       0.63   10.5   0.3    2.3  2  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d


Domain annotation for each model (and alignments):
>> KdpC  K+-transporting ATPase, c chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.4   0.4     6e-72   5.4e-68       2     181 ..       5     186 ..       4     187 .. 0.98

  Alignments for each domain:
  == domain 1  score: 228.4 bits;  conditional E-value: 6e-72
                 HHHHHHHHHHHHHHHTHHHHHHHHHHHHH-HHHHTT-EEE.ETEEEEETTT------SSS--------S...T-TTT-------SS-HHHHHHHHHHHH CS
        KdpC   2 rkalrlllvltvllgliYplavtgiaqllfpeqAnGslieadgkvvGseligqeftsdkYfhgRpsavn...ynaaasggsnlgpsnpellerveerva 97 
                 r+al+l+++lt+l+g +Ypl++t ++q++f++qAnGsli+ +g+v Gs+ligq+ft++ Yf+gRpsa++    n++asggsnl++snp+l ++v+erv+
  CTQ27099.1   5 RPALVLFILLTLLTGGVYPLLTTSLGQWWFNSQANGSLIRLNGEVRGSALIGQNFTAAGYFQGRPSATAetaDNPMASGGSNLAASNPALDKAVSERVQ 103
                 79******************************************************************999889************************* PP

                 HHHHH-TTS..-SB-HHHHS-BSSS---EE-HHHHHHTHHHHHHHHT--HHHHHHHHHHTEE--SSTTT---EEEHHHHHHHHH CS
        KdpC  98 alraenpekkkeevPadlvtaSgSGLDPhIspeaAelQvarvakarglseeeveklvaentegrllgilGeprVnVlklNlaLd 181
                 alra+np+++  +vP++lvt+S+SGLD +++p+aA +Qv+rva+ar+ls+e+v++lv+++t+++ll +lG+p Vn+l+lN+aLd
  CTQ27099.1 104 ALRAANPDAD-PRVPVELVTTSASGLDNNLTPAAALWQVPRVAQARQLSVEQVTQLVNQATQTPLLSFLGQPVVNILQLNMALD 186
                 ******9984.57**********************************************************************9 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3     7e-05      0.63      21      71 ..      60     110 ..      52     114 .. 0.91
   2 ?    3.9   0.0    0.0084        75      70      96 ..     122     148 ..     117     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7e-05
  T7SS_ESX_EspC  21 evaaeiasavaaaagasaavldshGpicaatndavaaaeaarraagealaa 71 
                    ++a++ +  ++a+a+++++ + s G+  aa+n a+++a+  r +a++a + 
     CTQ27099.1  60 TAAGYFQGRPSATAETADNPMASGGSNLAASNPALDKAVSERVQALRAANP 110
                    5889999999***********************************999875 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0084
  T7SS_ESX_EspC  70 aaasteLadkLraAAaaYeatDeeaag 96 
                     +++++L ++L+ AAa+++    ++a+
     CTQ27099.1 122 TTSASGLDNNLTPAAALWQVPRVAQAR 148
                    67899*************965555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1442.25
//
Query:       CTQ27100.1  [L=682]
Description: potassium translocating ATPase, subunit B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-36  125.2   3.6    6.5e-36  124.6   3.6    1.3  1  Hydrolase      haloacid dehalogenase-like hydrolase
    1.1e-33  116.2   0.5    1.1e-33  116.2   0.5    2.8  3  E1-E2_ATPase   E1-E2 ATPase
    6.7e-05   22.8   1.0    0.00026   20.8   0.2    2.1  2  Hydrolase_3    haloacid dehalogenase-like hydrolase
    9.4e-05   22.9   0.7    0.00079   19.9   0.1    2.6  2  HAD            haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   3.6   1.4e-39   6.5e-36       1     210 []     301     530 ..     301     530 .. 0.89

  Alignments for each domain:
  == domain 1  score: 124.6 bits;  conditional E-value: 1.4e-39
                 SSEEEEESBTTTBCHHHHHHHHHHHH.....CHHHHHHHHHH.HHCHHHHHHHHHHHHH........HHHH.HHHHHETTTE..........HHHHTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxx.xxxxxxxxxxxxxxxx........xxxx.xxxxxxxxxx..........xxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa.....alalaaaletg.sehpigkalvaaakar........sgal.tgfatfigrg..........ayaigkp 74 
                 ++++++Dk+GT+t g+++   +++ +     +la aa+l     e+p g+ +v  ak+r        + +l + f  f+ +            + +g++
  CTQ27100.1 301 VDVLLLDKTGTITLGNRQASAFLPARgveerTLADAAQLSSLaDETPEGRSIVVLAKQRfnlrerdlQ-SLhATFVPFTAQTrmsginidqrMIRKGSV 398
                 5899************999999999999977777777777779****************999965531.223334444444477777799999999*** PP

                 HHHHHH......HCHHHHHHHHHHHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEE CS
                 xxxxxx......xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  75 ewltal......dippdlgaaigsaqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdavia 165
                 + ++++      ++p d+++++++  +qg t  ++    ++l++++++d   vk +++e +a+L+++gi++v++tgdn+ ta ++a ++G         
  CTQ27100.1 399 DAIRRHveanggHFPVDVDKQVEEVARQGATPLVVaeGEKVLGIIALKDI--VKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAG--------- 486
                 *999999999*************************76559**********..**************************************......... PP

                 HHCES.STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 166 sdiet.vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                   ++   a++ pe+k+a+ir++q +++ vam GDg nDa+ala+A+
  CTQ27100.1 487 --VDDfLAEATPEAKLALIRQYQSEGRLVAMTGDGTNDAPALAQAD 530
                 ..6667*****************99999*****************8 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.9      0.73   3.3e+03     122     154 ..      38      70 ..      15      80 .. 0.50
   2 !  116.2   0.5   2.5e-37   1.1e-33      11     178 ..     114     282 ..     104     285 .. 0.93
   3 ?   -0.4   2.1      0.16     7e+02     112     164 ..     581     637 ..     560     650 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.73
                   HHHHHHHHHHHHHHS-STTTSSTT..HHHHHHHHH CS
  E1-E2_ATPase 122 lvpvvlliallvflialllgksla..eallralal 154
                   +v+v+ l++ l+++++   g+ l+   +++ a+++
    CTQ27100.1  38 IVWVGSLLTTLLAIAM--AGGALTgsATFTAAVSI 70 
                   2222222222222222..23333332444444444 PP

  == domain 2  score: 116.2 bits;  conditional E-value: 2.5e-37
                   -TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-T...TEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS--- CS
  E1-E2_ATPase  11 rdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekg...dmvfsGtvvvsgeakavVtatgedtelgkiarlveea 104
                   +d  ++ ++a++l+ GD+vl++agd++p+Dg+++eg a+vdesa+TGEs pv +e g    +v++Gt ++s+ ++++      +t+l++++++ve a
    CTQ27100.1 114 HDAPVDHVPAEDLRKGDVVLVEAGDIIPCDGEVIEGGASVDESAITGESAPVIRESGgdfASVTGGTRILSDWLVIRCSVNPGETFLDRMIAMVEGA 210
                   5667889***********************************************744222689********************************** PP

                   -----HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 105 kskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrl 178
                   +++ktp +  l+ l   l++v ll++++++ +  + g+ +  +++  +allv+ iP  ++ +++ + ++g++r+
    CTQ27100.1 211 QRRKTPNEIALTILLIALTLVFLLATATIWPFSAWSGNAV--SVTVLVALLVCLIPTTIGGLLSAIGVAGMSRM 282
                   **************99999999999999999998888875..9999**************************99 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.16
                   HHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT....HHHHHHHHHHHHHS-TTHH CS
  E1-E2_ATPase 112 qkkldklgkvlvpvvlliallvflialllgksla....eallralallvaaiPcaLp 164
                    + + k+++++ ++  +++  +++++++  +s+      a+++   ++v  iP aL 
    CTQ27100.1 581 ANDVAKYFAIIPAAFAAVYPQLAMLNVMGLHSPSsailSAVIFNALIIVFLIPLALK 637
                   333334444444444444445566666666666644443333333456777777775 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.18     8e+02      20      58 ..     453     491 ..     446     494 .. 0.86
   2 !   20.8   0.2   5.9e-08   0.00026     194     242 ..     501     549 ..     497     556 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.18
                  HHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEE CS
  Hydrolase_3  20 tkeaikklkekgikvviATGRslravlpvleelgldlpv 58 
                  +ke +++l++ gik v  TG +  ++  ++ e g+d ++
   CTQ27100.1 453 IKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFL 491
                  57788999************9999999999999988765 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 5.9e-08
                  HHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEE CS
  Hydrolase_3 194 klakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyv 242
                  +l+ +++ +   v+  GDg ND + L +a+++vAm+++++ +k+a ++v
   CTQ27100.1 501 ALIRQYQSEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMV 549
                  577888888899999*****************************98876 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.43   1.9e+03      38      77 ..      73     113 ..      50     128 .. 0.78
   2 !   19.9   0.1   1.8e-07   0.00079      63     130 ..     410     493 ..     375     527 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.43
         HAD  38 lllalfrellrldraglaelleallagls.eelaaelerfv 77 
                 ++  lf+ +++ + +g+ +++++ l+g +  ++a+ l++ +
  CTQ27100.1  73 WFTVLFANFAEAMAEGRSKAQANSLKGVKkTAFARKLRAPQ 113
                 44455889999999999999999999999999999888765 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1.8e-07
         HAD  63 aglseelaaelerfvaevirpk................lldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlat 130
                 ++++ ++++++e+  ++ ++p                 + + g++e++a+ r+ G+++v+++g +r  + +++ae g+d++la+
  CTQ27100.1 410 GHFPVDVDKQVEEVARQGATPLvvaegekvlgiialkdIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAE 493
                 555555555555555555555555555555554443446778***********************************9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4777.00
//
Query:       CTQ27101.1  [L=559]
Description: potassium translocating ATPase, subunit A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.2e-243  807.5  32.7   4.9e-243  807.3  32.7    1.0  1  KdpA      Potassium-transporting ATPase A subunit


Domain annotation for each model (and alignments):
>> KdpA  Potassium-transporting ATPase A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  807.3  32.7  2.7e-247  4.9e-243       3     547 .]      12     556 ..      10     556 .. 0.99

  Alignments for each domain:
  == domain 1  score: 807.3 bits;  conditional E-value: 2.7e-247
                 HHHHHHHHHHHHHHHHHHHHTT-...--SS-SHHHHHHHHHHT---.----HHHHHHHHHHHHHHHHHHHHHHHHTTTTSS--SS------HHHHHHHH CS
        KdpA   3 llllllllalplgkylakvfegektlldkllkpverllyrllgvdeeeemtwkeYalalllfnlvlllllylllrlqgvlplnpeglealspdlafnta 101
                 +ll+ll+la+plg  la+++++      + l+ ver+l+r++g++ +eem w +Y+lalllfn+++ l+l++ll+lqgvlp+np++l++ls+dla+nta
  CTQ27101.1  12 YLLVLLVLARPLGMCLARMVNDIP---LPGLAGVERVLWRVAGIR-AEEMGWLQYLLALLLFNALGGLALFALLMLQGVLPFNPQHLPGLSWDLALNTA 106
                 6899****************9986...467899***********9.89*************************************************** PP

                 HHHHTT-----S-HHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHS-S-S----HHHHHHHHHHHTHHHHHHHHHHHHHHHT--------EEEE CS
        KdpA 102 vSFvtntnlQhYsgestlsylsqmlgltvlnFvsaatGlavavalirglarketkelGnfyvdlvrailrvLLPlslvvalllvaqGvpqtlsgkaevt 200
                 +SFv+ntn+Q+Y+gest+sylsqm+gltv+nF+saatG+av++al r++ar+++++lGn +vdl+r++l++LLPlsl+val++++qGvpq+l++++ +t
  CTQ27101.1 107 ISFVSNTNWQAYAGESTMSYLSQMVGLTVQNFLSAATGIAVVFALTRAFARQKMSTLGNAWVDLTRITLWLLLPLSLLVALFFIQQGVPQNLQAYQPFT 205
                 *************************************************************************************************** PP

                 -SSS-EEEE--SSHHHHHHHHHHTT----SSSSTTTSTTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHTS-THHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        KdpA 201 tlegakqtialGpvAsleaIkqlGtnGGGffgaNsahpfenptaltnlleilaillipaalvftfGrmvkdkrqglailavmlvlflvllvvvvvaeaa 299
                 tleg +q +++GpvAs+eaIk lGtnGGGff+aNsahpfenptaltnl+++lai+lipaal+f+fG++v+d+rqg+ail++m+++f+++++vv++ae++
  CTQ27101.1 206 TLEGVHQLLPMGPVASQEAIKLLGTNGGGFFNANSAHPFENPTALTNLVQMLAIFLIPAALCFAFGEVVSDRRQGRAILWAMTLIFILCVAVVMWAETR 304
                 *************************************************************************************************** PP

                 --HHHHH....-----TTB-SSS-HHHHHHHHHHHHHTT----SS-GGGS-HHHHHHHHHHHHT.S-TT-TTTHHHHHHHHHHHHHHHHHHHHHTS--E CS
        KdpA 300 gnpalae..eqaggnmeGkEvrfGiaasalfavvttatstGavnamhdsltplgglvpllnmml.evvfGGvGvGllnllvfvilavFiagLmvGrtPe 395
                 gnp+l +  + ++ nmeGkE rfGi as+lfav+tta+s+Gavnamhds+t+lgg+vp++ m++ evvfGGvG+Gl+++l+fv+lavFiagLmvGrtPe
  CTQ27101.1 305 GNPHLLTlgADSSLNMEGKESRFGILASSLFAVITTAASCGAVNAMHDSFTALGGMVPMWLMQIgEVVFGGVGSGLYGMLLFVMLAVFIAGLMVGRTPE 403
                 ****9999988999************************************************************************************* PP

                 ETTEE--HHHHHHHHHHHHHHHHHHHHHHHHHTTSH.HHTT--S-THHHHHHHHHHHHHHHTT-----S-S---SHHHHHHHHHHHHHHHHHHHHHHHH CS
        KdpA 396 ylgkkiearevklaalaiLvhpllilvgtalalalp.alaslsnpgahglsevLYeftSaaanNGSafeGlgdntvfwnltlglamllgRflpiiavla 493
                 ylgkki+ re+k++alaiLv+p+l+l+gtala++++ ++a + npg+hg+sevLY++tSaa+nNGSaf+Glg+ t+fwnl+l+++ml+gRf++ii+v+a
  CTQ27101.1 404 YLGKKIDVREMKMIALAILVTPTLVLLGTALAMMTDaGRAGMFNPGPHGFSEVLYAVTSAANNNGSAFAGLGAATPFWNLLLAFCMLVGRFAVIIPVMA 502
                 ***********************************978888********************************************************** PP

                 HHHHHHTS------TT---SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH CS
        KdpA 494 iAgslaakkkvpesagtlktdtplFvvllvgvilivgaLtFlPalaLGPiaehl 547
                 iAgsl+akk +p+s gtl t+ +lF++ll+g++l+vgaLtF+PalaLGP+aeh+
  CTQ27101.1 503 IAGSLVAKKIQPASPGTLATHDALFIGLLIGTVLLVGALTFIPALALGPLAEHF 556
                 ****************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4248.15
//
Query:       CTQ27102.1  [L=68]
Description: hypothetical protein CH1034_160090 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-31  107.2   4.2    2.8e-31  107.1   4.2    1.0  1  DUF2517   Protein of unknown function (DUF2517)
     0.0018   18.6   0.2     0.0019   18.5   0.2    1.1  1  DUF2919   Protein of unknown function (DUF2919)
      0.007   16.1   0.5     0.0072   16.1   0.5    1.1  1  GT87      Glycosyltransferase family 87


Domain annotation for each model (and alignments):
>> DUF2517  Protein of unknown function (DUF2517)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   4.2   4.7e-35   2.8e-31       1      60 [.       4      63 ..       4      64 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 4.7e-35
     DUF2517  1 ykeYslkrvllRRilvvlvGilAlPvmlfrkdRarFysYLhrvWsktsdkPvWlaqsEka 60
                yk Y+++ +llRR+++v++G++AlPvmlf+kdRar+ys+LhrvWskts++PvW+aq+ ka
  CTQ27102.1  4 YKAYPAHIILLRRAFAVVAGVAALPVMLFWKDRARYYSWLHRVWSKTSEQPVWMAQAVKA 63
                99******************************************************9877 PP

>> DUF2919  Protein of unknown function (DUF2919)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   3.2e-07    0.0019      58     104 ..      18      65 ..       4      68 .] 0.83

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.2e-07
     DUF2919  58 lgLalgvpalllllligrrkkssewleklwragr.plllllllvdlll 104
                  + ++gv al ++l+   r +  +wl+++w++   + ++++++v+++ 
  CTQ27102.1  18 FAVVAGVAALPVMLFWKDRARYYSWLHRVWSKTSeQPVWMAQAVKAAH 65 
                 57899*************************987657888888887766 PP

>> GT87  Glycosyltransferase family 87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.5   1.2e-06    0.0072     130     172 ..      15      60 ..       3      67 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-06
        GT87 130 aaaaatalvltalpllllp..pssleyfle.tlfdtseriaedvgn 172
                   a+a++++++alp++l++  ++ ++ +l+ ++ +tse+ +++++ 
  CTQ27102.1  15 RRAFAVVAGVAALPVMLFWkdRARYYSWLHrVWSKTSEQPVWMAQA 60 
                 56899**************888889999997777776644555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 517.40
//
Query:       CTQ27103.1  [L=480]
Description: deoxyribodipyrimidine photolyase, FAD-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-84  280.0   6.0    1.3e-83  279.5   6.0    1.2  1  FAD_binding_7   FAD binding domain of DNA photolyase
    1.1e-45  155.5   0.3    3.2e-45  154.1   0.3    1.8  1  DNA_photolyase  DNA photolyase


Domain annotation for each model (and alignments):
>> FAD_binding_7  FAD binding domain of DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.5   6.0   1.4e-87   1.3e-83       1     201 [.     272     466 ..     272     467 .. 0.96

  Alignments for each domain:
  == domain 1  score: 279.5 bits;  conditional E-value: 1.4e-87
                    HHHHHHHHHHHHHHHHCSTTTT.TSSTTGCCTT------HH.HHHHHHTT-SS-HHHHHHHHHHHHHS---HHHHHHHHHHHCTTT-B-HHHHHHH CS
  FAD_binding_7   1 flreLlwrefyyallaaepela.eralkekfdripweeseeekleaWkeGrTGfPlvDAamrqLretGwmhnrlRmivasFltkdLlidWregeev 95 
                    +l+eL+wrefy++l++ +p+l+  r++++ +d+++w+ +e+ +l+aW++G+TGfP+vDAamrqL++tGwmhnrlRmivasFltkdL +dWr ge++
     CTQ27103.1 272 WLNELIWREFYRHLMVYYPKLCkGRPFTAWTDKVAWRAEEA-SLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFLTKDLRLDWRAGERY 366
                    89*******************97899**********88866.6***************************************************** PP

                    HHHH-TT--CCHHHHHHHHHCT-STTS-STT----CCCCHHHCSTT-HHHHHH-GGGTTS-HHHHT-GGGSGCHHHHHHT--TTTSS---SS-HHH CS
  FAD_binding_7  96 FeellvDadlasnagnwqwlagtgadaapafrifnpvkqgkkfDpegeyirrwvpeLkklpakyihepwkapaeeqkkagvvlgkdYpkpivdhke 191
                    F+++l+D+dla+n+g+wqw+a+tg+daap+frifnp++qg+kfD++g +irrw+peL+k+p+k++h+pw  +       ++ ++ dY +pivdhk+
     CTQ27103.1 367 FMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDKQGVFIRRWLPELAKVPEKALHQPWAWAD------KQGITLDYSRPIVDHKQ 456
                    *********************************************************************5543......347999*********** PP

                    HHHHHHHHHH CS
  FAD_binding_7 192 arkraleayk 201
                    ar+++l+a++
     CTQ27103.1 457 ARQETLAAWE 466
                    *****99876 PP

>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.1   0.3   3.6e-49   3.2e-45       2     162 ..       5     168 ..       4     177 .. 0.93

  Alignments for each domain:
  == domain 1  score: 154.1 bits;  conditional E-value: 3.6e-49
                     EEEESS---STT-HHHHHHHCT.TSEEEEEEEE-HHHHTCGS-CHHHHHHHHHHHHHHHHHHHHTT--EEEEESS....HHHHHHHHHHHCTECE CS
  DNA_photolyase   2 lvWfrrDlRlhDNpALaaAaas.gepvipvfvldpekahklrvgaarvdfllesLadLdeeLrelgirLvvrrgd....padvlpelakelgasa 91 
                     lvW+r+DlR+hDN ALaaA++  +++v+++++++p ++++ ++++++++f++  L++L+++L+e+gi+L+v + d    +++ l+++++++++s+
      CTQ27103.1   5 LVWLRTDLRIHDNLALAAACRDpQAQVLALYIATPGQWREHHLAPRQAAFIASHLQSLHAALAERGIPLWVEEADdftaSVERLADFCQQHQVSH 99 
                     89*****************6665999**********6666677********************************9******************* PP

                     EEEE---SHHHHHHHHHHHHHHHHCTSEEEEE--SSSS-HHHHHTTTSSSHSSHHHHHHCHHHHHCS-TTS CS
  DNA_photolyase  92 vvanreyepdererdeavkealrkagievesfddhtlvepgevktkkgkpykvFtpfrkrwlkelkeplpa 162
                     +++n++ye +er+rd+av++ lr  ++ ++ fdd++l++pg+v t++g++ykvFtpf+++  ++l++ lpa
      CTQ27103.1 100 LFYNYQYEFNERQRDAAVENTLR--DVICQGFDDSVLLPPGSVLTGGGEMYKVFTPFKNAFIRRLRDGLPA 168
                     ***********************..6*********************************999988855554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3575.37
//
Query:       CTQ27104.1  [L=492]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-89  300.9  13.7    1.6e-89  300.6  13.7    1.1  1  PTR2      POT family
    6.3e-15   55.0  46.7      2e-14   53.3  42.7    2.7  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.022   14.7   1.4      0.022   14.7   1.4    2.8  3  DUF3290   Protein of unknown function (DUF3290)
       0.16   11.8   0.0       0.16   11.8   0.0    4.7  5  DUF4271   Domain of unknown function (DUF4271)


Domain annotation for each model (and alignments):
>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.6  13.7   3.5e-93   1.6e-89       2     389 ..      77     443 ..      76     451 .. 0.97

  Alignments for each domain:
  == domain 1  score: 300.6 bits;  conditional E-value: 3.5e-93
                 HHHHHHHHHHHHHHHHCCCCTTTTSS--S--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        PTR2   2 ktIllgsiiyaiGhvvlalsaipslksaesagvrvallfigLalIalGtGgiKpnvSafgadqfeekdprersrfFsiFyfsiNvGSLlsliitpylqe 100
                 ++++lg++++aiGh+vl+ s++  +           +l+++La+I++G+G++K+nvS+++++++e+ dpr++++ Fs++y++ N+GS++++i+++y+qe
  CTQ27104.1  77 MAVMLGALLMAIGHLVLGASETAPV-----------FLYLSLAIIVCGYGLFKSNVSCLLGELYEPADPRRDGG-FSLMYAAGNIGSIIAPIACGYVQE 163
                 689***************9996664...........9*************************************.************************ PP

                 TT-HHHHHHHHHHHHHHHHHHHHCTTTS-EE---.---SHHHHCCCHSHHHHHCCCHHHHHHHHHHHHHSHHHHHH---HHCCHCHHHHHHHHH-.HHT CS
        PTR2 101 nvgyplgFgipavlmiiallvFllGsrlykkkpp.kgnvltkvfkvllvaaknkvkkirssagkkklhwldkakeldkalsileivvegivfnim.tkk 197
                 ++++++gF+++a++m+ +l++Fl+G+r+++++   + ++l    ++l+ + +  v +++++ ++ +l w++++ ++   l++++++  + +++i+  ++
  CTQ27104.1 164 EYSWAMGFSLAAIGMVAGLVIFLCGNRHFQHTAGvNRQALCARRFLLPNWGWLLVLLVTAPLLIAVLFWQEWSVYA---LIVATAIGLAVLARIYlRAE 259
                 ********************************999**************************************776...99999999999999999999 PP

                 HHCHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHH.HTST-BESSCB--GGGGHHHHHHHHHHHHHHHHHCTHHHHHHTTSSCCCCHHHHHHHHHHHH CS
        PTR2 198 kveevkrllrvvplflpliifwalyaQmgttlvlqa.rtmnrkigsfeippaqlqvlnailillliPifdklvypllrkltlgltslkkiavGlflasl 295
                   +++k l  +v+l+++ ++fwa+++Q+g++++l++ r++nr i s+e+p+a++q++na++++l+  ++++lv++ ++ ++ +++ + k+a+Gl l+s+
  CTQ27104.1 260 TDKQRKDLRLIVVLTAFSLLFWAFAQQGGSSISLYIdRFVNRHIMSYEVPTAMFQSINAFAVMLCGMVLAWLVKESVNGNR-TVRIWGKFALGLGLMSA 357
                 99******************************************88*********************************99.***************** PP

                 HHHHHHHHHHHHCCHHHT----------TCCCHHHHHHHHHHHHHCCCHHHHHHCTSS-TTTCCCCHHHH.HHHHHHHHHHHHHHHHHHHCCCT. CS
        PTR2 296 afaiaaivelkraktlpelpeaeevqisvlwlipqylligiselfasiggleffykeapksmkslitglf.lltnalgnflssvlatlvakates 389
                 +f+i+++ +++ a ++         q s+ ++++ ++++g++elf+++++++++++ + +++++++tg++ ll+ a++n+l++v+a+++++a+++
  CTQ27104.1 358 GFCILTLSARWSAAYG---------QSSMPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYmLLSGAIANYLAGVIADQTSQASFD 443
                 ****************.........9********************************************9*******************98874 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3  42.7   4.6e-18     2e-14       9     346 ..      22     423 ..      14     431 .. 0.70

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 4.6e-18
       MFS_1   9 alarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalg.lllllfa..sslwlllvlrvlqGlgagalf 103
                 +++++   ++l l+l+++l ++   +  l+++y  +  v+ +++G+l+d+ +G r  ++lg+ll+a+g l+l++ +  ++++ l+++ ++   g+g++ 
  CTQ27104.1  22 YFSFYGMRALLILYLTNQLKYDDNHAYALFSAYCSLVYVTPILGGYLADKlLGNRMAVMLGALLMAIGhLVLGA-SetAPVF-LYLSLAIIVCGYGLFK 118
                 5666666666767999**********************************88****************666666.5445555.55555555555568** PP

       MFS_1 104 pagaaliadwfpk..eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee............ 188
                 +++  l+ +++ +  ++r  +++l++a+ ++G+i++p++ g++ + ++W   f ++ai ++ ++v+  +l   ++ ++     ++ +            
  CTQ27104.1 119 SNVSCLLGELYEPadPRRDGGFSLMYAAGNIGSIIAPIACGYVQEEYSWAMGFSLAAIGMVAGLVI--FLCGNRHFQHTAGVNRQALcarrfllpnwgw 215
                 ************9777***********************************************665..8888888888888888888999999999999 PP

       MFS_1 189 ....................................kgtgpaplvp.awkallkdpvlwillialllfffgfsg.....lltllplylqevlgls.gll 244
                                                     ++   ++ ++   k l+      ++l+a+ l f++f++     ++ ++  + + ++ +s   +
  CTQ27104.1 216 llvllvtaplliavlfwqewsvyalivataiglavlARIYLRAETDkQRKDLRLI----VVLTAFSLLFWAFAQqggssISLYIDRF-VNRHIMSyE-V 308
                 9999888888887777776666666655444444442222222222122222222....3444444444444445587788888887.666666631.4 PP

       MFS_1 245 laglllallalvgailallagrlsdr..lgrrrrlllallllllaalglallavt...........ssavllllvlvliGfglgfvfpsllalasdlap 330
                  ++++ ++ a++++  ++++++l++    g+r+ ++++ ++l l++++  ++ +t           ss +l++l+l+++Gf+  f+ p +++++++   
  CTQ27104.1 309 PTAMFQSINAFAVMLCGMVLAWLVKEsvNGNRTVRIWGKFALGLGLMSAGFCILTlsarwsaaygqSSMPLMVLGLAVMGFAELFIDPVAMSQITRIEI 407
                 444444554444444466888888656634444444444444444444444444421244555665555555557777888888888888888888888 PP

       MFS_1 331 peeagtasglfntags 346
                 p  +g ++g+++++++
  CTQ27104.1 408 PGVTGVLTGIYMLLSG 423
                 8999999999996655 PP

>> DUF3290  Protein of unknown function (DUF3290)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.3     6e+03       7      32 ..      35      60 ..      31      68 .. 0.78
   2 ?   14.7   1.4   4.9e-06     0.022      14      61 ..     232     279 ..     226     286 .. 0.89
   3 ?   -0.5   0.3      0.24   1.1e+03      22      50 ..     462     490 ..     450     491 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
     DUF3290  7 Ylqsqqslndllryililvllllliv 32
                Yl++q + +d   y+l+ +   l+ v
  CTQ27104.1 35 YLTNQLKYDDNHAYALFSAYCSLVYV 60
                89999999999888888887777666 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.9e-06
     DUF3290  14 lndllryililvlllllivvlilylrnrldtkyRdLsiilllllllll 61 
                 ++++  y+li++ ++ l+v++ +ylr  +d + +dL +i++l+++ ll
  CTQ27104.1 232 WQEWSVYALIVATAIGLAVLARIYLRAETDKQRKDLRLIVVLTAFSLL 279
                 678999***********************************9876555 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.24
     DUF3290  22 lilvlllllivvlilylrnrldtkyRdLs 50 
                 ++  +l+++ vvl+++l + l+ + R L+
  CTQ27104.1 462 ITWGALACVGVVLVIWLYHSLKVRTRRLA 490
                 55566777788888888888888888775 PP

>> DUF4271  Domain of unknown function (DUF4271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.6      0.33   1.5e+03      63      94 ..      30      63 ..      17      81 .. 0.44
   2 ?   11.8   0.0   3.7e-05      0.16      65     179 ..      84     193 ..      71     199 .. 0.77
   3 ?    4.2   3.4    0.0077        34     133     170 ..     217     255 ..     208     265 .. 0.77
   4 ?    1.8   3.6     0.042   1.9e+02      56     167 ..     270     392 ..     259     394 .. 0.65
   5 ?    0.2   0.1      0.14   6.1e+02       3      71 ..     412     481 ..     410     488 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.33
     DUF4271 63 glllylllsefgslfgsyla..ssllllliifli 94
                +ll+++l+++ ++  +  +a  s + +l +++ i
  CTQ27104.1 30 ALLILYLTNQLKYDDNHAYAlfSAYCSLVYVTPI 63
                3444444444333333211123333333333333 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.7e-05
     DUF4271  65 llylllsefgslfgsylassllllliiflilllylllKlllykllgwlFfdkkkirqwifsylsylsllglllfplvlllvyfplssqillililiill 163
                 ll+ + +     +++    +++l+l +++i+++y l+K  +  llg l++  +  r   fs++     +g ++ p++    y+++ + +++ + l+ ++
  CTQ27104.1  84 LLMAIGHLVLGASET---APVFLYLSLAIIVCGYGLFKSNVSCLLGELYEPADPRRDGGFSLMYAAGNIGSIIAPIAC--GYVQEEYSWAMGFSLAAIG 177
                 444444433333333...99**************************************************99999875..5677777777777777777 PP

     DUF4271 164 liklllllyksirifk 179
                 ++  l +++ + r+f 
  CTQ27104.1 178 MVAGLVIFLCGNRHFQ 193
                 7777775665555554 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0077
     DUF4271 133 lgl.llfplvlllvyfplssqillililiilllikllll 170
                 l+l +  pl++++++++++s ++li++++i l++ + ++
  CTQ27104.1 217 LVLlVTAPLLIAVLFWQEWSVYALIVATAIGLAVLARIY 255
                 444488999999**********99999976655544443 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.042
     DUF4271  56 lltclllglllylllsefgslfgsyla.........ssllllliiflilllylllKlllykllgwlFfdkkkirqwifsylsylsl.lgl.llfplvll 143
                 ++++  ++ll+  + +++gs+ + y++          ++   ++ ++  ++++l+ ++l +l+    +  + +r w +  l + ++ +g+ +l + + +
  CTQ27104.1 270 IVVLTAFSLLFWAFAQQGGSSISLYIDrfvnrhimsYEVPTAMFQSINAFAVMLCGMVLAWLVKESVNGNRTVRIWGKFALGLGLMsAGFcILTLSARW 368
                 444455556666666666666665555666666666444444444555566677778888888888888888888888888775541466566666667 PP

     DUF4271 144 lvyfplssqillililiilllikl 167
                  + +++ss  l++l+l++++++ l
  CTQ27104.1 369 SAAYGQSSMPLMVLGLAVMGFAEL 392
                 777777777777777777777766 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.14
     DUF4271   3 illllcflllalaksrf.rkffsrllklf.fnnkereslfkeetksesrfqlflllltclllglllyllls 71 
                  +l ++++ll+ a +++   ++++++++  f      +++ +        q+ + +l c+ + l++ l++s
  CTQ27104.1 412 GVLTGIYMLLSGAIANYlAGVIADQTSQAsFDAAGAVNYSID-AYITVFSQITWGALACVGVVLVIWLYHS 481
                 555566666544444331455666666666666666666666.6666666777777777777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 3375.20
//
Query:       CTQ27105.1  [L=247]
Description: conserved hypothetical protein; putative metal-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-57  194.7   0.0    2.3e-57  194.4   0.0    1.0  1  NIF3      NIF3 (NGG1p interacting factor 3)


Domain annotation for each model (and alignments):
>> NIF3  NIF3 (NGG1p interacting factor 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.4   0.0   1.3e-61   2.3e-57       2     242 ..       6     234 ..       5     238 .. 0.95

  Alignments for each domain:
  == domain 1  score: 194.4 bits;  conditional E-value: 1.3e-61
        NIF3   2 ivevleelaplelaeswDnvGlqvgdpekevkkvllaldlteevleeAiekgadliithHPlifkplkrlteddykkrllkkliknnislysaHtnlDa 100
                 + +++++ ++ +   ++ ++Glqv+  +++v+k+++++++++++l+eA++ +ad++i+hH++++k+ +++    +k+r+lk+l+ n+i+ly  H++lDa
  CTQ27105.1   6 LEQLINDKLNSAAISDFAPNGLQVE-GRETVHKIVTGVTACQALLDEAVRLQADAVIVHHGYFWKNESPVIRG-MKRRRLKTLLANDINLYGWHLPLDA 102
                 56789999999999**********6.899***********************************999988877.8************************ PP

        NIF3 101 apg.GvndwlakalglekieplepskeekkeeeeglgrigeleepvsleelakklkkklglekvrvagdldkkvkkvaicaGsGaslieeakakgaDll 198
                 +p+ G+n++la++lg++ + ++ep           l   gel+ pvs  ela+ ++++lg + + +  + + +v++va+c+G+G+s+i++a++ g+D++
  CTQ27105.1 103 HPElGNNAQLAHLLGINVLGEIEP-----------LVPWGELSMPVSGLELASWIEARLGRKPLWCGDTGPDTVSRVAWCTGGGQSFIDAAARFGVDAF 190
                 **************9997666666...........4457**************************999******************************* PP

        NIF3 199 iTGelkhhealdakekgiavidvgHyatErvflealaelLkekl 242
                 iTGe++++++++a+e+g++++++gH+atEr++++al e+L+e++
  CTQ27105.1 191 ITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLTETT 234
                 ****************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1964.71
//
Query:       CTQ27106.1  [L=218]
Description: putative hydrolase subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-70  235.1   0.0    6.7e-70  234.9   0.0    1.0  1  CT_C_D    Carboxyltransferase domain, subdomain C and D


Domain annotation for each model (and alignments):
>> CT_C_D  Carboxyltransferase domain, subdomain C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.9   0.0   3.7e-74   6.7e-70       3     202 .]       6     202 ..       4     202 .. 0.95

  Alignments for each domain:
  == domain 1  score: 234.9 bits;  conditional E-value: 3.7e-74
                 EEEETTTEEEEEE-SS--HHHHHHHHHHHHHHHT..STTECEEEE-SSEEEEEESCCCCHHHHHH.HHHHHHHH.---------EEEEEEEESTTT-TT CS
      CT_C_D   3 irplGdeallvefgeeisealskrvlalaaalrakalpgvvelvpayrsllvefdpealdaaellaalkalleeaeeeaaeesrlveipvcYdgevgpD 101
                 +  lG++a+++e++ +++++++kr++ l+++l++   ++vve++p++++++v ++  +  a e +++l++++ee +++ ++esr + ipv+Y+ge+gpD
  CTQ27106.1   6 CYLLGETAVVLELEPPVTLESQKRIWGLTQRLTD--REEVVEVIPGMNNITVVLRHPQEMAWEAIDKLQRWWEE-SDALEPESREISIPVIYGGEAGPD 101
                 6679******************************..8******************77778889999******98.6667777778************** PP

                 HHHHHHHHTS-HHHHHHHHHHS-EEEEEE-SSTT-EEE----GGG-----SS--S-B-TTEEEEETTEEEEE-S-B---SEEEEEE-S-SB-TTSSSSB CS
      CT_C_D 102 LeevaelnglsveevirlhtaaeyrvaflGfapGfaylggldprlavpRrasPrtrvpagsVgiageqtgiyplesPGGWqliGrTplplfdpdreppa 200
                 L +va+++gls+++v++lh++ ey+v flGf pGf+y+ggl+++la+pRra+Pr  vpagsVgi+g+qtgiypl++PGGWql+GrTpl+lfdp+re+p 
  CTQ27106.1 102 LGDVARHSGLSEKQVVELHSSVEYMVWFLGFQPGFPYFGGLPEQLAMPRRAEPRVLVPAGSVGIGGSQTGIYPLATPGGWQLLGRTPLALFDPKREEPV 200
                 *************************************************************************************************99 PP

                 S- CS
      CT_C_D 201 ll 202
                 ll
  CTQ27106.1 201 LL 202
                 86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1725.91
//
Query:       CTQ27107.1  [L=310]
Description: putative hydrolase subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-98  327.3   0.0    8.7e-98  327.1   0.0    1.0  1  CT_A_B    Carboxyltransferase domain, subdomain A and B


Domain annotation for each model (and alignments):
>> CT_A_B  Carboxyltransferase domain, subdomain A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.1   0.0  4.9e-102   8.7e-98       1     263 [.      24     281 ..      24     282 .. 0.96

  Alignments for each domain:
  == domain 1  score: 327.1 bits;  conditional E-value: 4.9e-102
                 GT----S-SSHHHHHHHHHHTTS-TTS-EEEEESC-EEEEESS-EEEEEEESCEEEEETTEEE-SSCEEEE-TT-EEEEEEESSECEEEEEETT-BE-- CS
      CT_A_B   1 lGvprsGamDrlalrlANrlvgNeegaaaLEitlggpelrfeedavvavtGadleatldgepvplwepvevkaGdvLklgaakaGlraYLavaGgldvp 99 
                 +G++r+Ga+D+ a+++AN+lvgN+++aaaLEitlg++ ++f++++++a+tGa +eatldg+pv l +++e+kaG++L l+++++G+r+YLavaGg+dvp
  CTQ27107.1  24 WGISRCGALDKPAMTIANLLVGNAPEAAALEITLGQIDVQFTRHCWFALTGAACEATLDGAPVWLGWRMEAKAGQRLVLKNPQHGIRSYLAVAGGIDVP 122
                 69************************************************************************************************* PP

                 -BTTB-S-BTTTTBSTTTTS---TT-EEEBSSSTT--S-C.BGGCS---SSCSEEEEEEEE-TTGCCB-HHHHHHHHHS-EEEECEECSSEEEEESGG. CS
      CT_A_B 100 evlgSrStdllaglGgleGraLkagdvLplgeaaaaaaakakeleaaapeeseeeevrvvpGpqadlfteealeallssewtvsaesdRmGvrLdGeag 198
                 evlgSrStdl+ g+Gg+eGr+L++gd++++g+++++ +a+   +  ++ +  +   +r++pGp+++ f+  ++e++++s+w++s++s+RmG+rL+G ++
  CTQ27107.1 123 EVLGSRSTDLKVGIGGIEGRRLQDGDQVKIGKSSRRFSAS---RGVKQLPIGNI--IRALPGPEYHEFDSVSQESFWRSPWKLSPQSNRMGYRLQG-QP 215
                 ************************************9984...55555555555..8***************************************.55 PP

                 SSCS..TEEEEEE--TTEEEE-CTTEEEEE-TTS-SEEEEEEEEEE-GGGHHHHTT--TTSEEEEE CS
      CT_A_B 199 lerke.sellsegvvlGaiqvppdgqpivllaDhqttGGYpkiatvisadldklaQlrpgdkvrFe 263
                 l+r++ +e+ls+g+ +G +qvp++gqpivl++D+qttGGYp+ia++i+ad+ +laQ++ g+ ++F 
  CTQ27107.1 216 LKRTTdREMLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYQLAQIPLGQPIHFA 281
                 9996657**********************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2354.09
//
Query:       CTQ27108.1  [L=247]
Description: putative lactam utilization protein, UPF0271 family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-93  310.6   0.9    8.7e-93  310.4   0.9    1.0  1  LamB_YcsF  LamB/YcsF family


Domain annotation for each model (and alignments):
>> LamB_YcsF  LamB/YcsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.4   0.9   4.8e-97   8.7e-93       1     238 [.       3     235 ..       3     236 .. 0.99

  Alignments for each domain:
  == domain 1  score: 310.4 bits;  conditional E-value: 4.8e-97
                 EEEEEEE---BTTB--S-HHHHCCC-SEEEEE-SSSS--HHHHHHHHHHHHHTT-EEEEE---S-TTTTT-S-----HHHHHHHHHHHHHHHHHHHHHT CS
   LamB_YcsF   1 idlnaDlGEsfgawklgdDeallplvtsaNiACGfHaGdpevmrktvelakekgVaiGAhpgypDlegFGRremelspeelealvlyQigaLkafakae 99 
                 idlnaDlGE+     +++D+all+lv+saNiACGfHaGd+  m++ v+ a ++gVaiGAhp++pD+e+FGR++m+l+pe+++a+vlyQigaL+a+++a+
  CTQ27108.1   3 IDLNADLGEG-----CASDSALLQLVSSANIACGFHAGDAVLMQQCVREALKNGVAIGAHPSFPDRENFGRTAMQLPPETVYAQVLYQIGALAAIVHAQ 96 
                 8********7.....78********************************************************************************** PP

                 T----EE---HHHHHHHHH-HHHHHHHHHHHHHH-TT.TEEEETTSHHHHHHHHCT--EEEEEETTB-B-TTSSB--TTSTTSB---HHHHHHHHHHHH CS
   LamB_YcsF 100 gvklshvkpHGaLynqaakdeelaeavveavkaldpelillglagseleeaaeeaglkvvaevfaDraYeadgslvprsqpgaviedpeevaervlklv 198
                 g +l+hvkpHG+Lynqaak++ la+a+++av++ d++l+l+glagsel +a+++++l++ +evfaDr Y+adgslvprsqpga+ie++e++++++l++v
  CTQ27108.1  97 GGELRHVKPHGMLYNQAAKEPPLADAIARAVRDADADLVLVGLAGSELIRAGQHYQLTTRQEVFADRGYQADGSLVPRSQPGALIESEEQALAQTLEMV 195
                 *************************************************************************************************** PP

                 HTSEEEBTTSSEEE---SEEEE-SSSHHHHHCHCCCCHHH CS
   LamB_YcsF 199 eegkvtavdgeevelkadsicvHgDtpeavelaravreal 238
                 ++++v++++ge+ ++ka+++c+HgD ++a+++ar++r+a+
  CTQ27108.1 196 QHNRVRSLSGEWAHVKAETVCLHGDGAHALDFARRLRAAF 235
                 *************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1828.67
//
Query:       CTQ27109.1  [L=241]
Description: Membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-89  299.3   3.1    1.5e-89  299.1   3.1    1.0  1  DUF969           Protein of unknown function (DUF969)
    0.00027   21.0   1.7    0.00052   20.1   1.7    1.5  1  Na_H_antiport_2  Na+-H+ antiporter family
  ------ inclusion threshold ------
        3.6    8.4   8.4         13    6.6   4.0    2.9  2  PrgI             PrgI family protein


Domain annotation for each model (and alignments):
>> DUF969  Protein of unknown function (DUF969)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.1   3.1   2.5e-93   1.5e-89       1     216 []       7     225 ..       7     225 .. 0.98

  Alignments for each domain:
  == domain 1  score: 299.1 bits;  conditional E-value: 2.5e-93
      DUF969   1 llkLigilivvvGfalkldtllvvvvaglvtglvaglslveiletlGkaFvknrlvslfllt.LpviglleraGLkeraaklikkikkatagrlllvYl 98 
                 l++Ligi+++vvGf+l+++++lvv+++g+vtg++a++++ +ile+lG++F+++r++  +ll+ L+vigller+GLkera+++i+ki++atagrll+vYl
  CTQ27109.1   7 LWPLIGIAVIVVGFVLRFNPVLVVIISGIVTGVAAHMPIATILEKLGEGFLNTRNLPFILLLpLAVIGLLERHGLKERAQAWIAKIHSATAGRLLIVYL 105
                 599*****************************************************9998888************************************ PP

      DUF969  99 lirelaaalgl.slgGhaqfvRPlvaPmaeaaaekkagelsekeeekikalaaaadnvglFFgqniFvaaggvlLikgtlkel.gievealqlalvaip 195
                 ++re++aalgl slgGh+q+vRPl+aPmae+aaek+ g l+ + + +++a++aa+dnvglFFg++iFva+g+++++++++ e+ gi+ e+l++al+ ip
  CTQ27109.1 106 FVREATAALGLtSLGGHPQMVRPLLAPMAEGAAEKRFGPLPGNVRYRLRAMSAATDNVGLFFGEDIFVAFGAIIFMHNFMLESgGIQTEPLHIALWGIP 204
                 ******************************************************************************9877659************** PP

      DUF969 196 vaiialviaavrlllldrkle 216
                 +ai+a++i+a+rl+ ldr+l+
  CTQ27109.1 205 TAICAFLIHAARLWRLDRHLQ 225
                 ******************985 PP

>> Na_H_antiport_2  Na+-H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   1.7   8.6e-08   0.00052       5      60 ..      11      66 ..       9      93 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 8.6e-08
  Na_H_antiport_2  5 iavlvmlvLsllrvnvvlallisalvgGlvgglsleetieafasGlgggaevAlsy 60
                     i ++v++v  +lr+n vl ++is +v G+ +++++ +++e + +G+ +  +  + +
       CTQ27109.1 11 IGIAVIVVGFVLRFNPVLVVIISGIVTGVAAHMPIATILEKLGEGFLNTRNLPFIL 66
                     7789999999***********************************98877654444 PP

>> PrgI  PrgI family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.0    0.0022        13      32      77 ..      42      91 ..       4     104 .. 0.61
   2 ?    2.3   0.1     0.048   2.9e+02      29      64 ..     171     211 ..     164     228 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0022
        PrgI 32 aiglylllrafl..eelasvlvillavPvaalgfykkdglp..lekylka 77
                 ++++ +l+++     ++  l ++l +P+a++g+ +++gl+  ++ ++++
  CTQ27109.1 42 HMPIATILEKLGegFLNTRNLPFILLLPLAVIGLLERHGLKerAQAWIAK 91
                223333333333442344455556699*************5445544444 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.048
        PrgI  29 llvaiglylllrafl.....eelasvlvillavPvaalgfy 64 
                 ++va+g+++++++f+      ++  + + l  +P a+++f 
  CTQ27109.1 171 IFVAFGAIIFMHNFMlesggIQTEPLHIALWGIPTAICAFL 211
                 56788999999999887666566666666668887777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1898.74
//
Query:       CTQ27110.1  [L=331]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-126  421.6  21.6     2e-126  421.4  21.6    1.0  1  DUF979    Protein of unknown function (DUF979)


Domain annotation for each model (and alignments):
>> DUF979  Protein of unknown function (DUF979)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.4  21.6  1.1e-130    2e-126       2     311 .]       7     330 ..       6     330 .. 0.98

  Alignments for each domain:
  == domain 1  score: 421.4 bits;  conditional E-value: 1.1e-130
      DUF979   2 llYilvGlvllvvavlalrdkenpkrigtalFwlllglvfllgkl.........lpalvvGvlvivlallagfkqvkkgklkesseeereksakklgnk 91 
                 +lY+l+G+vllvva++++rdk+np+r++t+lFw+l+glvfllg++           +++vG +v+vlal+agf+ v+ g+++++++ee+++sak+lgnk
  CTQ27110.1   7 YLYWLAGAVLLVVAIMSWRDKSNPRRLTTGLFWGLYGLVFLLGDWtyqlvgdkrTVNIAVGGVVVVLALIAGFGGVRLGSYHQRTQEEKTTSAKRLGNK 105
                 79******************************************888888888899******************************************* PP

      DUF979  92 lflpallipvvalvvalllkklk....alldakk.tklatlvalglgavvalivalvltkekpkealkegrrlldavgwaaiLpqlLaaLGavFaaagv 185
                 lf+pal+ipvv+++++ll+++l+    al+ + + ++l tl+++++g++++l++a+ +t+e+++++++e+rrlld+vgwa+iLpq+La+LG++F+aagv
  CTQ27110.1 106 LFFPALAIPVVTVIGVLLFNNLPswqvALFGPGNhATLITLFSMTVGTLIGLAMAIRMTHETVAQPMQEARRLLDSVGWAFILPQILAVLGLLFTAAGV 204
                 *********************9999999999999899************************************************************** PP

      DUF979 186 GkvvaklvskvipegsrllavvvYcvgmalfTiimGNaFAAfpvitagiglPlliaqlganpavvaalgmlaGycGTLltPmAANFNivPaallelkdk 284
                 G+ ++ l++++++ ++r++av+vY++gma++T++mGNaFAAfp++tag+g+P+l+ q+g+npav+aa+gm++GycGTL+tPmAANFNivPaallel+dk
  CTQ27110.1 205 GTSISWLTEHYLAVDNRFIAVAVYAIGMAVLTMVMGNAFAAFPIVTAGVGIPILVLQHGGNPAVMAAIGMFSGYCGTLMTPMAANFNIVPAALLELPDK 303
                 *************************************************************************************************** PP

      DUF979 285 yavikaQiptalvllvvnivlmyllaf 311
                 +avikaQipt+++ll+vn++l+y+l+f
  CTQ27110.1 304 NAVIKAQIPTGILLLIVNVFLLYFLMF 330
                 *************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1014  (0.0565564); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2371.29
//
Query:       CTQ27111.1  [L=215]
Description: Pyrrolidone-carboxylate peptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-81  273.2   0.2      2e-81  273.0   0.2    1.0  1  Peptidase_C15  Pyroglutamyl peptidase


Domain annotation for each model (and alignments):
>> Peptidase_C15  Pyroglutamyl peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.0   0.2   1.1e-85     2e-81       3     201 ..       5     202 ..       3     203 .. 0.98

  Alignments for each domain:
  == domain 1  score: 273.0 bits;  conditional E-value: 1.1e-85
                    EEEEEE---TT-S--HHHHHHHHHTT-EETTEEEEEEEE-SSTTHHHHHHHHHHHHH--SEEEEEEE-TT--SEEEE-EEES-BE-SS--TTS--- CS
  Peptidase_C15   3 vLvtGfdPfgkekinPaleavkeLdgaeiaeativkrevPtvfkksadvlkkaiaeikpdivlaiGqagGrsaitvervainldDaripDnegkql 98 
                    vL+tGf+Pfg+e++nP++e+vk+Ldg+ i ++++v++++P vf ++  vlk a++  +p + +a+GqagGr+ itvervain+dDaripDn+g+q+
     CTQ27111.1   5 VLITGFEPFGGETVNPSWEVVKQLDGMIIRGQQVVAKQLPCVFGEALTVLKAALETYQPRLTIAVGQAGGRVDITVERVAINVDDARIPDNKGQQP 100
                    9*********************************************************************************************** PP

                    ESB-SSTTS-SEEE--S-HHHHHHHHHHTT--EEEES---SSHHHHHHHHHHHHHHHHS--SEEEEEEE-B-GGGTHHHHHT-B--HHHHHHHHHH CS
  Peptidase_C15  99 idepispdgeaaYfstlPvkamvkalkeaGvPaavsntaGtfvCnhllYqvlylldkklpevraGfihiPylpeqvidkpetpslsldkevagvka 194
                    idepi ++g+aa fstlP+ka+v al+++G+Pa+vs+taGtfvCnh++Y++l++l+ k+   ++GfihiPylpeq++ +p+ +s+s+ +  a+++ 
     CTQ27111.1 101 IDEPIVANGPAACFSTLPIKAIVSALRQQGIPASVSQTAGTFVCNHVMYGLLHQLQGKS-GQKGGFIHIPYLPEQAAAHPGEASMSVATVRAALET 195
                    ****************************************************9887765.569********************************* PP

                    HHHHHHH CS
  Peptidase_C15 195 aieaive 201
                    ai +++e
     CTQ27111.1 196 AIAVALE 202
                    ***9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1732.64
//
Query:       CTQ27112.1  [L=263]
Description: endonuclease VIII; 5-formyluracil/5-hydroxymethyluracil DNA glycosylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-11   44.7   0.0      2e-11   43.7   0.0    1.5  1  H2TH            Formamidopyrimidine-DNA glycosylase H2TH doma
    4.6e-10   40.1   0.0    1.2e-09   38.8   0.0    1.6  2  Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-termina
    6.2e-08   32.3   4.6    1.2e-07   31.4   4.6    1.5  1  zf-FPG_IleRS    Zinc finger found in FPG and IleRS
  ------ inclusion threshold ------
      0.031   14.3   0.2      0.094   12.8   0.2    1.8  1  DUF4351         Domain of unknown function (DUF4351)
      0.092   11.5   0.0       0.12   11.1   0.0    1.2  1  FbpA            Fibronectin-binding protein A N-terminus (Fbp
       0.22   11.7   0.9       0.37   10.9   0.9    1.4  1  Zn-ribbon_8     Zinc ribbon domain


Domain annotation for each model (and alignments):
>> H2TH  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   6.7e-15     2e-11       2      77 ..     127     205 ..     126     214 .. 0.90

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 6.7e-15
                 --BTTSTTS-HHHHHHHHHT-...-SBHHHHHHCTTTSCS--HHHHHHHHHHTT--TTSBGGGS-HHHHHHHHHHHHHH CS
        H2TH   2 gpeplseaftvdalaerlkkk...krkiktlLLDqklvaGlGNiyadEvLfrakihPerlakslskeelellhqeikev 77 
                 gp+ l+ + t++ +++rl +    +r+   lLLDq+  aGlGN  + E+L++ +++++r+a++ls+++l++l++++ ++
  CTQ27112.1 127 GPDVLDMTLTAEQVKARLLSAkfrNRQFSGLLLDQAFLAGLGNYLRVEILWQVGLSGKRKAAELSDSQLDALAHALLDI 205
                 889999999999999888765566899**********************************************998876 PP

>> Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0     4e-13   1.2e-09       1     107 [.       1     104 [.       1     107 [. 0.87
   2 ?   -1.9   0.0       1.7   5.1e+03      66      79 ..     161     184 ..     114     212 .. 0.56

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 4e-13
                     X--HHHHHHHHHHHHHHHTT-EEEEEEE-SSHHHTSTHHHHHTT-.SEEEEEEEEETTEEEEEE..EEEEEEE-TTTEEESS..........TTE CS
  Fapy_DNA_glyco   1 MPElpEVetvrrglrrhllgkkiakvevlkdktlrgspaafakalkgrkiasvgrrGKyllleldggevlvvhlgmtGrllikeaeeepp..kht 93 
                     MPE pE+ +++  l+ +++g+ +++v +   +    + +  +++l g++++++  rGK ll +++gg +l  h ++ G +++ +a  ep+  +  
      CTQ27112.1   1 MPEGPEIRRAADKLEAAIKGEPLTNVWF-AFP----QLQPYQTQLIGQRVTHIATRGKALLTHFSGGLTLYSHNQLYGVWRVVDAGVEPQsnRVL 90 
                     **************************99.333....4555899*************************************886666666666899 PP

                     EEEEEEGGGEEEEE CS
  Fapy_DNA_glyco  94 kvrlelddgtelaF 107
                     +vrl+++++  l +
      CTQ27112.1  91 RVRLQTASKAILLY 104
                     99999988777666 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
                     ...........EEEEEEE-TTTEE CS
  Fapy_DNA_glyco  66 g..........gevlvvhlgmtGr 79 
                     +          +  ++ ++g++G+
      CTQ27112.1 161 QaflaglgnylRVEILWQVGLSGK 184
                     033333333444444555555554 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   4.6     4e-11   1.2e-07       1      29 [.     235     263 .]     235     263 .] 0.98

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 4e-11
                   TSB-TTT--BBEEEECTTEEEEE-TTTT. CS
  zf-FPG_IleRS   1 GepCpRCwryiervgqagrstyfCprCqk 29 
                   Ge+C+RC+++ie++ ++ r  y+Cp Cq+
    CTQ27112.1 235 GERCERCGGIIEKTTLSSRPFYWCPGCQH 263
                   9***************************8 PP

>> DUF4351  Domain of unknown function (DUF4351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   3.1e-05     0.094      32      51 ..     188     207 ..     181     209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.1e-05
     DUF4351  32 ksLsleqLEdLgealLDFss 51 
                  +Ls  qL++L+ alLD+  
  CTQ27112.1 188 AELSDSQLDALAHALLDIPR 207
                 68***************865 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.1e-05      0.12     197     238 ..     164     205 ..     128     228 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.1e-05
                 BTTXXHHHHHHHHTTXSSSH...............HHHHHHH CS
        FbpA 197 fqGlspllaeelleragldketsakelseedlerlyealqel 238
                 + Gl++ l  e+l+++gl  + +a+els+++l++l++al ++
  CTQ27112.1 164 LAGLGNYLRVEILWQVGLSGKRKAAELSDSQLDALAHALLDI 205
                 58***********************************99765 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.9   0.00012      0.37       7      33 ..     237     262 ..     226     263 .] 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
  Zn-ribbon_8   7 rCeeCghefevlqsisdapltaCPeCg 33 
                  rCe+Cg   e+   +s +p   CP C+
   CTQ27112.1 237 RCERCGGIIEKTTLSS-RPFYWCPGCQ 262
                  7*********998655.67777****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1912.98
//
Query:       CTQ27113.1  [L=427]
Description: citrate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   8.3e-133  442.9   0.1   9.6e-133  442.7   0.1    1.0  1  Citrate_synt  Citrate synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  442.7   0.1  5.3e-137  9.6e-133       1     361 []      46     410 ..      46     410 .. 0.95

  Alignments for each domain:
  == domain 1  score: 442.7 bits;  conditional E-value: 5.3e-137
                   GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHHS-HHHHHHHHHHSS---HHHHHHHHHHHHCTTS--HHHHHHHHCSSTTS-HHHHHHHHHHH CS
  Citrate_synt   1 glrgvaaleteisevdgekgelrYRGydieeLaeekssfeevaylLltgelPtkeelkefkeelaearklpekvlealealpkdahpmavlraavsa 97 
                   g++++a++e++i+++dg++g+l++RG++i++La  +s++ ev+y Ll+ge Pt++e++efk +++++++++e++++ + a+++d+hpmav+   + a
    CTQ27113.1  46 GFTSTASCESKITFIDGDEGILLHRGFPIDQLA-TESNYLEVCYILLYGEKPTQAEYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGA 141
                   68899****************************.7************************************************************** PP

                   HHHHSTT...CTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS.--.---TTSSHHHHHHHHHHS.....S---HHHHHHHHHHHHHHS--SSS CS
  Citrate_synt  98 lsaddee...seakeeseeaalrdalkliAklptiaaaiyrarlgrepl.epddklsyaenflymlrg.....kkpdeeeaklldlalvlhaDHeln 185
                   l+a++++    ++ +++e aa+r    l++k+pt+aa++y+++ g+ p+ +p+++lsya nfl+m+++     ++ ++ +++++d++l+lhaDHe+n
    CTQ27113.1 142 LAAFYHDsldVNNPRHREIAAYR----LLSKMPTMAAMCYKYSIGQ-PFvYPRNDLSYAGNFLRMMFAtpceeYEVNPVLERAMDRILILHADHEQN 233
                   *****997444444445555555....*****************97.777***99***********988999999********************** PP

                   HHHHHHHHHHTTT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG.GHHHHHHHHHHTTT.S--TTBC-SSSSS--HHHHHHHHHHHHHHTC CS
  Citrate_synt 186 aSTfaarvvaStladlysaiaagigalkGplhgganeavlkmleeigsaeveveeylekvlakek.erlpGfGHrvykksDpRakilkelaeelaee 281
                   aST ++r ++S++a+++++iaagi++l+Gp hgganea+lkmleei+s e  ++e+++++++k++  rl+GfGHrvyk++DpRa++++e ++e+ +e
    CTQ27113.1 234 ASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVE-HIPEFVRRAKDKNDsFRLMGFGHRVYKNYDPRATVMRETCHEVLKE 329
                   **********************************************9998.***********9977******************************* PP

                   .HTHHHHHHHHHHHHHHHHHHHHCHHGCT-EB-THHHHHHHHHHTT--GGGHHHHHHHHHHHHHHHHHHHHH.HT------E CS
  Citrate_synt 282 .kgkdpllklaeeleevapevlkekeeknlypNvDfysgvlyralgipeelftvlfaisRvaGwlAhileql.adnkiiRPr 361
                    ++kd+ll++a+ele +a +++++ e k+lypNvDfysg++++a+gip+++ftv+fa++R++Gw+Ah+ e   +  ki RPr
    CTQ27113.1 330 lGTKDDLLQVAMELEHIALNDPYFIE-KKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWNEMHsDGMKIARPR 410
                   *99999********************.*******************************************7644488****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2775.50
//
Query:       CTQ27114.1  [L=134]
Description: succinate dehydrogenase, membrane subunit, binds cytochrome b556 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-29  103.0   5.2    1.2e-29  102.8   5.2    1.0  1  Sdh_cyt   Succinate dehydrogenase/Fumarate reductase transmem


Domain annotation for each model (and alignments):
>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   5.2   6.7e-34   1.2e-29       2     120 ..      11     128 ..      10     129 .. 0.92

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 6.7e-34
     Sdh_cyt   2 rknrplsphlqlyrlplgawlsilhritGvallvglllllvwlllalslsspesfarvvallaspiklilllllllallyHllnGiRhllwDlglgl.e 99 
                 +k+rp++ +lq++r+p++a++silhr++Gv+ +v  + +l+w ll +slsspe+f + ++++ s + +++++++l al+yH++ GiRhl++D+g+   +
  CTQ27114.1  11 KKQRPVNLDLQTIRFPITAIASILHRVSGVITFV-AVGILLW-LLGTSLSSPEGFLTAASIMDSFFVKFIMWGILTALAYHVVVGIRHLMMDFGYLDeT 107
                 689*******************************.6666668.567779***************6777777************************9999 PP

     Sdh_cyt 100 lesarksalavlalavalvlv 120
                 le++++sa++ ++++v+l+l+
  CTQ27114.1 108 LEAGKRSAKISFVITVVLSLL 128
                 9*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1072.65
//
Query:       CTQ27115.1  [L=115]
Description: succinate dehydrogenase, membrane subunit, binds cytochrome b556 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-06   26.3  13.0    7.3e-06   26.0  13.0    1.2  1  Sdh_cyt         Succinate dehydrogenase/Fumarate reductase tr
  ------ inclusion threshold ------
      0.011   15.4   3.0      0.015   15.0   2.8    1.5  1  CybS            CybS, succinate dehydrogenase cytochrome B sm
       0.29   11.2  12.2       0.65   10.1  12.2    1.6  1  Fumarate_red_C  Fumarate reductase subunit C
       0.96    9.6   8.3       0.55   10.4   0.6    2.7  2  CbtB            Probable cobalt transporter subunit (CbtB)


Domain annotation for each model (and alignments):
>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0  13.0   1.6e-09   7.3e-06      18     120 ..      11     104 ..       2     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.6e-09
     Sdh_cyt  18 lgawlsilhritGvallv.glllllvwlllalslsspesfarvvallaspiklilllllllallyHllnGiRhllwD.lglglelesarksalavlala 114
                  g + +il r t+++l++ +++++     +a+  +++ s++ ++ ++as ++++  ll+l++ l+H+++G+  +l D +      +    + ++ la++
  CTQ27115.1  11 NGVHDFILVRATAIVLTLyIIYMVG---FFAT--TGEISWEVWTGFFASGFTKVFTLLALVSILIHAWIGMWQVLTDyV------KPLALRLVLQLAIV 98 
                 577889************4444444...3444..6899***********99999999999*****************54......56666666666666 PP

     Sdh_cyt 115 valvlv 120
                 valv++
  CTQ27115.1  99 VALVAY 104
                 666553 PP

>> CybS  CybS, succinate dehydrogenase cytochrome B small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   2.8   3.3e-06     0.015      53     106 ..      50     103 ..      20     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.3e-06
        CybS  53 plvagslspvlDavlavlllihshlgfesciiDYipkrvygklhklahylLalg 106
                 +++a+  ++v   +  v++lih+++g+  + +DY+++  ++ + +la+++  ++
  CTQ27115.1  50 GFFASGFTKVFTLLALVSILIHAWIGMWQVLTDYVKPLALRLVLQLAIVVALVA 103
                 555544455555555589***********************8888877654443 PP

>> Fumarate_red_C  Fumarate reductase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  12.2   0.00014      0.65      24      88 ..      16      79 ..      10     115 .] 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00014
  Fumarate_red_C 24 YmlrEatavlvalfalvlllgllaLaqgeaayeafleflqnPlvlllniiaLaaallhavT.wfel 88
                    ++l  ata++++l+ +++ +g +a ++ge ++e +  f ++ +  ++ ++aL+++l ha+   +++
      CTQ27115.1 16 FILVRATAIVLTLYIIYM-VGFFA-TTGEISWEVWTGFFASGFTKVFTLLALVSILIHAWIgMWQV 79
                    566668999999998776.57666.579******************************97323333 PP

>> CbtB  Probable cobalt transporter subunit (CbtB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6   0.00012      0.55      11      29 ..      18      36 ..      11      40 .. 0.87
   2 ?    2.5   1.7     0.036   1.6e+02      12      27 ..      95     110 ..      85     115 .] 0.51

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
        CbtB 11 lqlvaAllLGlllvylvgf 29
                l+ ++A++L l ++y+vgf
  CTQ27115.1 18 LVRATAIVLTLYIIYMVGF 36
                66799*************9 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.036
        CbtB  12 qlvaAllLGlllvylv 27 
                  +++++l + +l+++v
  CTQ27115.1  95 LAIVVALVAYVLYGFV 110
                 3334444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       999  (0.0557198); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 902.39
//
Query:       CTQ27116.1  [L=588]
Description: succinate dehydrogenase, flavoprotein subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.3e-119  397.8   5.5   7.6e-119  397.5   5.5    1.1  1  FAD_binding_2   FAD binding domain
    2.2e-35  121.5   0.1    3.4e-35  120.8   0.1    1.3  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
    0.00018   20.9   2.0     0.0024   17.2   0.6    2.6  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00024   20.3   3.2     0.0021   17.2   0.9    2.1  2  GIDA            Glucose inhibited division protein A
     0.0051   15.6   0.2     0.0051   15.6   0.2    2.3  3  HI0933_like     HI0933-like protein
  ------ inclusion threshold ------
      0.016   14.8   5.8       0.36   10.4   5.7    2.3  1  DAO             FAD dependent oxidoreductase
       0.07   12.4   0.2       0.85    8.8   0.1    2.2  2  Thi4            Thi4 family


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.5   5.5    3e-122  7.6e-119       1     417 []       9     405 ..       9     405 .. 0.98

  Alignments for each domain:
  == domain 1  score: 397.5 bits;  conditional E-value: 3e-122
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    D++ViG+G+AG++AAl++++ G+++a+++k+++++++t+ +qGgi ++l +++     +d++e+h++dt+k++d+ +dq+++e++++++pea+ eL
     CTQ27116.1   9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVAL-GNS----HEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILEL 99 
                    89***********************************************.666....46************************************* PP

                    HHTT----BCCTSSB-EEE-TT-SST......EEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEE.CTTEEEEEEEEETTTT CS
  FAD_binding_2  97 eelgvpfsrtedgpvdvrelGglsat......artlhdaadarretlvtghallarlvesarkagvdfqerteadeLiv.edgrvtGavvenpesg 185
                    e++g+pfsr +dg++++r++Gg+s++      art++ aad+      tghall++l+++ +k++++++ +++a++L+  +dg v+G+++ + e+g
     CTQ27116.1 100 EHMGLPFSRLDDGRIYQRPFGGQSKNfggeqaARTAA-AADR------TGHALLHTLYQQNLKNHTTIFSEWYALDLVKnQDGAVVGCTALCIETG 188
                    *******************************999999.***9......******************************94488************* PP

                    CEEEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT-EEE-TT CS
  FAD_binding_2 186 revrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgilvdkd 281
                    + v ++a+a+vlatgG+gr           +++ttna+++tGdg ++a+rag++++d  me++qfhPt++     g+g+L+te++rgeGg+l++k 
     CTQ27116.1 189 EVVYFKARATVLATGGAGR----------IYQSTTNAHINTGDGVGMAIRAGVPVQD--MEMWQFHPTGIA----GAGVLVTEGCRGEGGYLLNKH 268
                    *******************..........****************************..************....********************* PP

                    SSBTH.......GGGS-HHHHHHHHH.HHHHTTTS.....CCBEEEE-TT.SSHHHHHHHSHHHHHHHHHCCT......S-TTTSEEE.......E CS
  FAD_binding_2 282 GrrFm.......nelasrdvvsrailekeiaeggs.....eanvyldashgldaegleatleaineeaangldkdfgrgidpadrpipgpfyavkv 365
                    G+rFm       ++la rdvv+r+i+  ei+eg++     +++  l ++h l++e le++l++i e  +++++      +dp ++pip       v
     CTQ27116.1 269 GERFMeryapnaKDLAGRDVVARSIM-IEIREGRGcdgpwGPHAKLKLDH-LGKEVLESRLPGILELSRTFAH------VDPVKEPIP-------V 349
                    **************************.***********************.**********************......*********.......* PP

                    EEEEEEES-EEEBETTSBE....STTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 366 vpaqhytmgGvetdengrv....ldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                     p++hy+mgG++t  +g++     + ++ +ipGL+A+Ge a+++vhganrlgGnsl
     CTQ27116.1 350 IPTCHYMMGGIPTKVTGQAltvnEKGEDVVIPGLFAVGEIACVSVHGANRLGGNSL 405
                    *******************9988899999*************************98 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.1   1.3e-38   3.4e-35       1     128 []     460     588 .]     460     588 .] 0.92

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 1.3e-38
                     .HHHHHHHHHHSSSSB-HHHHHHHHHHHHHHHHHHTTB--S---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH--S-BTTBEBTTS-SEETTT-S CS
  Succ_DH_flav_C   1 rkeLgkimqkkvgvfRteegLkealkelkelrerlknvkvtdkskvaNqelvealelanllelAeaiaksAlaRkESrGaHaredfperdDenwl 95 
                     rk+L+++mq++++vfR+++ ++++l++lk +rerlkn +++d+s+++N++ ve+lel+nl+e+A a+a+sA  R+ESrGaH r dfp+rdDenwl
      CTQ27116.1 460 RKALQECMQHNFSVFREGDAMHKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWL 554
                     799******************************************************************************************** PP

                     EEEEE...TT-SS-EEEEEE--GGG-.....-S---SS CS
  Succ_DH_flav_C  96 khtlasldaakeeveleyepveletl.....kpkeRsY 128
                      h+l+  +    + +++ + v++e+      +pk R+Y
      CTQ27116.1 555 CHSLYLPE----SESMTRRSVNMEPKlrpafPPKIRTY 588
                     *****443....45677777777766677779999999 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.6   9.4e-07    0.0024       2      37 ..       9      48 ..       8     250 .. 0.77
   2 ?    2.3   0.0     0.033        83     255     279 ..     366     395 ..     354     416 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 9.4e-07
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve....legtcln 37
                 d vviG+G AG++aal+++q+g   +l++     + +++ 
   CTQ27116.1  9 DAVVIGAGGAGMRAALQISQSGQTCALLSkvfpTRSHTVS 48
                 78********************999999545444444444 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.033
                  TTEEE--TTSBES.STTEEE-GGGC....T CS
                  xxxxxxxxxxxxx.xxxxxxxxxxx....x RF
  Pyr_redox_2 255 rggivvdeflrtn.vpgiyaiGDva....g 279
                  + ++ v+e+++   +pg++a+G +a    +
   CTQ27116.1 366 GQALTVNEKGEDVvIPGLFAVGEIAcvsvH 395
                  345699****8655*********9955551 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.9   8.1e-07    0.0021       1      29 [.       9      37 ..       9      61 .. 0.84
   2 ?    3.1   0.0     0.016        41      98     158 ..     147     210 ..     122     226 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.1e-07
                CEEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLit 29
                d +ViG+G AG+ AAl+++++G   +L+ 
  CTQ27116.1  9 DAVVIGAGGAGMRAALQISQSGQTCALLS 37
                579**********************9993 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.016
                 HHHHHHHHHTSTTEEEEES-EEEEEECTTEEEE...EEETTS-..EEEECEEEE--TT-BT-EEEE CS
        GIDA  98 skevteklenepnleiieeeveeliveekkvkg...vvtedge..tikakavviatGtflkgkihi 158
                 ++ +++ l+n+  +       + ++ +++ v g   ++ e+ge  ++ka+a+v+atG   +g+i+ 
  CTQ27116.1 147 HTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGctaLCIETGEvvYFKARATVLATGG--AGRIYQ 210
                 45566666665555444444444444444444422244555551167888*******9..666554 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2     2e-06    0.0051       2      31 ..       9      38 ..       8      64 .. 0.87
   2 ?   -1.5   0.0       0.3   7.8e+02     151     165 ..     191     205 ..     142     234 .. 0.76
   3 ?   -1.7   0.1      0.35     9e+02     374     385 ..     379     390 ..     357     416 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllek 31
                 d +viG+G AG+ aA+++++ g+  +ll k
   CTQ27116.1  9 DAVVIGAGGAGMRAALQISQSGQTCALLSK 38
                 89**********************999977 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.3
                  EEEEESEEEE----S CS
  HI0933_like 151 eeleadklvlAtGGl 165
                    ++a+++vlAtGG+
   CTQ27116.1 191 VYFKARATVLATGGA 205
                  45789999***9997 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.35
                  TSTTEEE-GGGB CS
  HI0933_like 374 kvpgLffaGEvl 385
                   +pgLf +GE+ 
   CTQ27116.1 379 VIPGLFAVGEIA 390
                  589*******83 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   5.7   0.00014      0.36       1     201 [.       9     203 ..       9     229 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHH.HHHHHHHHHHHHHSSTTSEEE..EEEEEEESSHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlsl.ealeelreleeelgididyrr..tGllslaadee 94 
                 d v+iG+G +G+ +A++ ++ g   +ll k     s++ ++ +g+  +   + +++   +++   ++++  + + ++ +i+   +      l l++   
  CTQ27116.1   9 DAVVIGAGGAGMRAALQISQSGqtCALLSKVFPTRSHTVSAQGGITVALGNSHEDN---WEWHMyDTVKGSDYIGDQDAIEYMCKTgpEAILELEHMGL 104
                 78*******************9********94444577777776665533323322...2222212233333333332322221110011111111111 PP

                 HHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEE.EEEETCEEEEE...EECTEE CS
         DAO  95 elealdkllallleagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgl.eeedgkvwgve...rttpge 189
                  + +ld+    ++++g +++ + +e              a  +  ++    ++l++ l+++  +++ +i+ +  + +l +++dg v+g      +t ge
  CTQ27116.1 105 PFSRLDDGRIYQRPFGGQSKNFGGE-------------QAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLvKNQDGAVVGCTalcIET-GE 189
                 1111111111112233222222222.............1222222222234466666666666666666666666664355556666665555333.33 PP

                 E..EEEEEEEE--G CS
         DAO 190 n..daadavVnaaG 201
                 +  ++a+a V+a+G
  CTQ27116.1 190 VvyFKARATVLATG 203
                 32335566666666 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00033      0.85      17      43 ..       7      32 ..       2      53 .. 0.83
   2 ?    1.0   0.0     0.084   2.1e+02     209     232 ..     377     401 ..     360     403 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00033
                EEEEEEE--SHHHHHHHHHHHHCTTS- CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlk 43
                e D v++GaG +G+ aa  ++++ +  
  CTQ27116.1  7 EFDAVVIGAGGAGMRAALQISQS-GQT 32
                789*****************998.444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.084
                 CEEETTEEE-T.HHHHHHHT-EB-- CS
        Thi4 209 revvpnlyvaG.mevaevdganRmG 232
                   v+p+l++ G ++   v+ganR+G
  CTQ27116.1 377 DVVIPGLFAVGeIACVSVHGANRLG 401
                 45789*99877578999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4288.27
//
Query:       CTQ27117.1  [L=238]
Description: succinate dehydrogenase, iron-sulfur subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-31  108.4   0.0    2.5e-31  107.9   0.0    1.2  1  Fer2_3    2Fe-2S iron-sulfur cluster binding domain
    4.5e-10   39.9   1.2    8.3e-10   39.1   1.2    1.5  1  Fer4_17   4Fe-4S dicluster domain
    2.8e-08   34.1   4.1    3.4e-07   30.6   4.0    2.2  2  Fer4_8    4Fe-4S dicluster domain
    2.5e-07   30.7   1.5    4.8e-07   29.8   1.5    1.4  1  Fer4_10   4Fe-4S dicluster domain
     0.0005   20.2   3.5     0.0031   17.7   3.8    2.1  1  Fer4_9    4Fe-4S dicluster domain
      0.001   19.6   7.1     0.0059   17.2   7.5    2.0  2  Fer4_7    4Fe-4S dicluster domain
     0.0055   16.9   2.5       0.74   10.0   0.0    2.5  3  Fer4_18   4Fe-4S dicluster domain
      0.009   16.9   2.8        2.9    8.9   0.8    2.5  2  Fer4_16   4Fe-4S double cluster binding domain
  ------ inclusion threshold ------
       0.24   12.0   8.5        6.4    7.5   2.3    2.6  2  Fer4_4    4Fe-4S binding domain
       0.45   10.4  13.7       0.54   10.2   0.5    2.6  2  Fer4      4Fe-4S binding domain
          4    7.7  11.3       0.59   10.3   0.5    2.5  2  Fer4_6    4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   0.0   1.5e-34   2.5e-31       2     108 ..       5     111 ..       4     112 .. 0.94

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 1.5e-34
      Fer2_3   2 lkvkRfdprrdrgkqkvqeyeveae..eedtvldaLlkikeevdptlafrasCregiCGscavainGkptlaCtatikdlakqkseieleplpkfpvir 98 
                 ++++R++p+ d+ ++++q+y++eae  +++++ldaL ++ke+ dp+l+fr+sCreg+CGs+++++nGk+ laC + i++l++  ++i ++plp++pvir
  CTQ27117.1   5 FSIYRYNPDVDD-APHMQDYTLEAEegRDMMLLDALIQLKEK-DPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIR 101
                 789*****7766.***********97678999********98.8************************************98877************** PP

      Fer2_3  99 DLvvDideml 108
                 DLvvD+ +++
  CTQ27117.1 102 DLVVDMGQFY 111
                 ******9986 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   1.2   5.1e-13   8.3e-10       1      61 []     148     221 ..     148     221 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 5.1e-13
     Fer4_17   1 rCiqCgyClpeCpsyeaydne...pkkllraakl..........glleeaekeekaslCieCgeCerkCPqgld 61 
                 +Ci C++C  +Cps+++++++   p+ ll+a+++          ++l++ ++   + +C+++ +C+++CP+gl+
  CTQ27117.1 148 ECILCACCSTSCPSFWWNPDKfigPAGLLAAYRFlidsrdtetsERLDGLSDAFSVFRCHSIMNCVSVCPKGLN 221
                 6******************977779999999888888777666556666666689****************996 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   3.7   6.7e-06     0.011      36      63 ..     138     161 ..     106     163 .. 0.72
   2 !   30.6   4.0   2.1e-10   3.4e-07       2      64 ..     146     219 ..     145     220 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.7e-06
      Fer4_8  36 vqeeqvleeeealwsCttcgaCtevCpv 63 
                 +q+e+     ++l++C  c +C++ Cp 
  CTQ27117.1 138 EQREK----LDGLYECILCACCSTSCPS 161
                 33333....479**************96 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 2.1e-10
      Fer4_8   2 lekCieCgaCqsaCp............vlrrtk.khlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvg 64 
                 l++Ci C +C ++Cp            +    + ++l d+r+  +   ++ ++l+++ ++++C++ ++C++vCp+g
  CTQ27117.1 146 LYECILCACCSTSCPsfwwnpdkfigpAGLLAAyRFLIDSRDTETS--ERLDGLSDAFSVFRCHSIMNCVSVCPKG 219
                 578***********85555555555553333444777777777444..6677777799****************98 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   1.5   2.9e-10   4.8e-07       8      56 .]     148     217 ..     144     217 .. 0.97

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.9e-10
     Fer4_10   8 tCirCgkCvkaCPadl.....................tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                  Ci C+ C ++CP+ +                     +++  + e+ ++  +   v +C+ + +Cv++CP
  CTQ27117.1 148 ECILCACCSTSCPSFWwnpdkfigpagllaayrflidSRDTETSERLDGLSDAFSVFRCHSIMNCVSVCP 217
                 5*************99********************99999****************************9 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   3.8   1.9e-06    0.0031       1      49 [.     148     219 ..     148     221 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.9e-06
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase.......................eaCigCgaCveaCpkg 49 
                 +C+ C  C ++Cp+  +++d++ + a l aa                          +C++ + Cv +Cpkg
  CTQ27117.1 148 ECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRflidsrdtetserldglsdafsvFRCHSIMNCVSVCPKG 219
                 5***********777777777766666544333677777777777***********99************98 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   4.3    0.0045       7.3      36      50 ..     147     161 ..     116     165 .. 0.74
   2 !   17.2   7.5   3.6e-06    0.0059       2      51 ..     149     219 ..     148     220 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0045
      Fer4_7  36 ekClgCgaCvavCPt 50 
                  +C+ C  C + CP+
  CTQ27117.1 147 YECILCACCSTSCPS 161
                 469999999999996 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 3.6e-06
      Fer4_7   2 CigCgaCvaaCpvkaieldeeenek...........gtekv.............eidpekClgCgaCvavCPtg 51 
                 Ci C  C   Cp+ + + d++  ++                             +++  +C +  +Cv+vCP+g
  CTQ27117.1 149 CILCACCSTSCPSFWWNPDKFIGPAgllaayrflidS---RdtetserldglsdAFSVFRCHSIMNCVSVCPKG 219
                 *****************99876666333333333320...03334444566666777789************98 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       4.2   6.8e+03      71      93 ..      55      77 ..      53      84 .. 0.70
   2 !   10.0   0.0   0.00046      0.74      45      73 ..     132     161 ..      98     163 .. 0.64
   3 !    6.6   0.0    0.0052       8.5      57      75 ..     202     220 ..     182     227 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.2
     Fer4_18 71 cPtgidirkGlqleciscllcid 93
                c  g+   +Gl ++  + l ci 
  CTQ27117.1 55 CREGVCGSDGLNMNGKNGLACIT 77
                56666667888888877777774 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00046
     Fer4_18  45 kalkekee.rkekgagdcidcescvkvcPt 73 
                 ++l+  e+ +k +g  +ci c  c + cP 
  CTQ27117.1 132 EHLQMPEQrEKLDGLYECILCACCSTSCPS 161
                 2333333303457888************95 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0052
     Fer4_18  57 gagdcidcescvkvcPtgi 75 
                 ++  c +   cv+vcP g+
  CTQ27117.1 202 SVFRCHSIMNCVSVCPKGL 220
                 5567899999******997 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.8    0.0018       2.9      38      65 ..     133     160 ..     111     162 .. 0.75
   2 !    7.5   0.0    0.0047       7.7       1      15 [.     205     219 ..     187     228 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0018
     Fer4_16  38 kkdlaedeekckkqeaitgCdiCqdvCP 65 
                 + +++e++ek +  ++++ C+ C + CP
  CTQ27117.1 133 HLQMPEQREKLDGLYECILCACCSTSCP 160
                 4455566666666689999999999999 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0047
     Fer4_16   1 rCgtCgkCaevCPtn 15 
                 rC++  +C++vCP +
  CTQ27117.1 205 RCHSIMNCVSVCPKG 219
                 477777888888865 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   2.3    0.0039       6.4       3      15 ..     148     160 ..     143     173 .. 0.93
   2 ?    7.3   0.4    0.0049       7.9       5      16 ..     204     218 ..     204     223 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0039
      Fer4_4   3 rCigCgsCvaaCP 15 
                  Ci C +C  +CP
  CTQ27117.1 148 ECILCACCSTSCP 160
                 6************ PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0049
      Fer4_4   5 igCgs...CvaaCPq 16 
                 ++C s   Cv++CP 
  CTQ27117.1 204 FRCHSimnCVSVCPK 218
                 57887777******6 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   7.1     0.044        71       7      19 ..     148     160 ..     147     161 .. 0.93
   2 ?   10.2   0.5   0.00033      0.54       7      21 ..     205     219 ..     202     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.044
                 TSSS-THHHHHST CS
        Fer4   7 kCigCGaCvevCP 19 
                  Ci C  C   CP
  CTQ27117.1 148 ECILCACCSTSCP 160
                 5************ PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00033
                 TSSS-THHHHHSTTT CS
        Fer4   7 kCigCGaCvevCPvg 21 
                 +C   ++Cv+vCP g
  CTQ27117.1 205 RCHSIMNCVSVCPKG 219
                 699999*******76 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   4.6      0.33   5.3e+02       9      20 ..     149     160 ..     149     167 .. 0.95
   2 ?   10.3   0.5   0.00036      0.59       8      22 ..     205     219 ..     205     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.33
      Fer4_6   9 CigCgdCvrvCP 20 
                 Ci C  C + CP
  CTQ27117.1 149 CILCACCSTSCP 160
                 ************ PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00036
      Fer4_6   8 kCigCgdCvrvCPeg 22 
                 +C + ++Cv+vCP g
  CTQ27117.1 205 RCHSIMNCVSVCPKG 219
                 688889*******76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1874.92
//
Query:       CTQ27118.1  [L=935]
Description: 2-oxoglutarate decarboxylase, thiamin-requiring [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-67  226.1   0.0    3.7e-67  225.4   0.0    1.4  1  Transket_pyr     Transketolase, pyrimidine binding domain
    2.7e-54  183.0   0.0    5.7e-54  181.9   0.0    1.6  1  OxoGdeHyase_C    2-oxoglutarate dehydrogenase C-terminal
    1.1e-48  165.8   0.0    2.1e-48  164.8   0.0    1.4  1  E1_dh            Dehydrogenase E1 component
    5.7e-16   57.8   1.4    1.8e-15   56.2   0.4    2.2  2  2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus
     0.0039   17.5   0.1      0.013   15.8   0.0    1.9  2  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.4   0.0     1e-70   3.7e-67       3     178 .]     593     787 ..     591     787 .. 0.99

  Alignments for each domain:
  == domain 1  score: 225.4 bits;  conditional E-value: 1e-70
                   EEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT................TEGEEE--S-HHHHHHHHHHHHHHCT.TEEEEEEEEH CS
  Transket_pyr   3 iawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg................egrvidsgisEqavlgfavGaalagp.llviveaqFg 82 
                    +w  ae++a+a+l++e+  v+l+g+D+++gtf +r+++ h+q                 ++rv+ds +sE+avl+f++G+a+a+p +l+i+eaqFg
    CTQ27118.1 593 FDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQTngstytplqhvhngqgQFRVWDSVLSEEAVLAFEYGYATAEPrTLTIWEAQFG 689
                   58*********************************************************************************************** PP

                   HHHGGGHHGGHHHHHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTT..EEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC. CS
  Transket_pyr  83 dFangAqiyadqairsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipg..lkvvrPsdpaetkhllrrairredrkPvvlrlpksllrh 177
                   dFangAq+++dq+i+sge+k+++++g+v++lp+g++++Gpeh+sa+le++l+l+++  ++v++Ps+pa+++h+lrr++ r  r+P+v++ pksllrh
    CTQ27118.1 690 DFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEqnMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRH 786
                   ******************************************************9999**********************99**************8 PP

                   T CS
  Transket_pyr 178 k 178
                   +
    CTQ27118.1 787 P 787
                   5 PP

>> OxoGdeHyase_C  2-oxoglutarate dehydrogenase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.9   0.0   1.6e-57   5.7e-54       1     152 []     790     932 ..     790     932 .. 0.96

  Alignments for each domain:
  == domain 1  score: 181.9 bits;  conditional E-value: 1.6e-57
  OxoGdeHyase_C   1 rSsleelaegtsFqrvledeeeealkepekvkrvvlcsGkvyydLlkerekkekekdvaivriEqlyPfpfeelkeelekYpnakelvWvQeEpkN 96 
                    +Ss++ela+g +F + + + ++    +p+ vkrvvlcsGkvyydLl++r+k+e+ kdvaivriEqlyPfp+++++e+l+ Y +++++vW+QeEp N
     CTQ27118.1 790 VSSMDELANG-TFLPAIGEIDQ---LDPQAVKRVVLCSGKVYYDLLEQRRKNEQ-KDVAIVRIEQLYPFPHQAVQEALKAYAHVHDFVWCQEEPLN 880
                    599*******.9********99...46***********************9876.***************************************** PP

  OxoGdeHyase_C  97 qGawsfveprletvlkekkkkkkklryvgreasaspAtGskkvhkkeqealleeaf 152
                    qGaw++ ++++++v+        +lry+gr+asaspA+G+++vh+k+q++l+++a+
     CTQ27118.1 881 QGAWYCSQHHFREVIP----FGASLRYAGRPASASPAVGYMSVHQKQQQDLVNDAL 932
                    ***************8....3578*****************************997 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.8   0.0   5.8e-52   2.1e-48      15     275 ..     221     506 ..     209     517 .. 0.86

  Alignments for each domain:
  == domain 1  score: 164.8 bits;  conditional E-value: 5.8e-52
                 HHHHTTSS-S-----TT-HHHHHHHHHTS-TT..SEEEES.S--HHHHHHTT--..HHHHHHHHTT-T...TTSSGTT-..-E....BTT.....BEEE CS
       E1_dh  15 alykrkkrigfyhlsagqealkvgiaaaleke..Dliite.YReagvllargls..leeilaeltgkv...kgkggsrh.elmya..ekes...rilgg 99 
                 a++   kr++++   a+++ lk +i +a + +  ++++ + +R++ ++l+++l    + ++ e++gk     g g++++  +  +  e+e    ++  +
  CTQ27118.1 221 AKFPGAKRFSLEGGDALIPMLKEMIRHAGKSGtrEVVLGMaHRGRLNVLVNVLGkkPQDLFDEFAGKHkehLGTGDVKYhMGFSSdmETEGglvHLALA 319
                 566678999****************9999988789998767********998876699**********6664556666633332211222112366677 PP

                 -SSTTTH..HHHHHHHHHHHH.....HHTS---EEEEEEGGG.TT-HHHHHHHHHHHHTT--E...EEEEEEESEETTE.EHHHH-S---GGG..TTTT CS
       E1_dh 100 ngivgaq..vplvaGialaak.....iegkkevailliGDgA.anqGdvyealnlaalwklpv...ifvveNNkygisT.eaekasaskeladrargvg 186
                  ++++++  +p+v G+++a          +k++ i+++GD+A ++qG v e+ln++++ ++ v   + +v NN+ g++T ++  a+++++ +d ++ v+
  CTQ27118.1 320 FNPSHLEivSPVVIGSVRARLdrldePSSNKVLPITIHGDAAvTGQGVVQETLNMSKARGYEVggtVRIVINNQVGFTTsNPLDARSTPYCTDIGKMVQ 418
                 77888777777777999998788887788999***********************************************777899************** PP

                 S-EEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHHHH CS
       E1_dh 187 ipglrVdgnDplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeelke 275
                 +p+++V+++Dp+av  +++ A ++++++k+++ i+lv+YR++gH+e D+ps+++ + ++++++k+++p ++++++L ++ v++ e   e
  CTQ27118.1 419 APIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQ-PLMYQKIKKHPTPRKIYADKLEQEKVATLEDATE 506
                 ******************************************************.**************************99886654 PP

>> 2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.4   4.9e-19   1.8e-15       1      39 [.      12      50 ..      12      52 .. 0.96
   2 ?   -0.6   0.0      0.29     1e+03      23      40 ..      55      72 ..      54      73 .. 0.80

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 4.9e-19
  2-oxogl_dehyd_N  1 dsfLsgtnaaYiEelYeayleDPsSVdesWrayFknled 39
                     +s+Lsg+n+++iE+lYe +l DP+SVd+ Wr+ F++l++
       CTQ27118.1 12 SSYLSGSNQSWIEQLYEDFLTDPDSVDANWRSMFQQLPG 50
                     69**********************************986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.29
  2-oxogl_dehyd_N 23 PsSVdesWrayFknledg 40
                     P+  ++  r+yF+ l ++
       CTQ27118.1 55 PDQFHSKTRDYFRRLAKD 72
                     566688889*****9875 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.1       4.9   1.7e+04      13      30 ..     366     383 ..     362     388 .. 0.80
   2 !   15.8   0.0   3.5e-06     0.013      21      55 ..     834     868 ..     819     872 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.9
                 HHHHHHHHHHHHTT--EE CS
     PFOR_II  13 gtaksavdelReegikvG 30 
                 g++++  ++ +++g++vG
  CTQ27118.1 366 GVVQETLNMSKARGYEVG 383
                 567888899999999998 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 3.5e-06
                 HHHHTT--EEEEEES--BS--HHHHHHHSTT-SEE CS
     PFOR_II  21 elReegikvGllrlrtlrPFPeeelkellkkvkkv 55 
                 + ++e  +v ++r+  l+PFP+++++e+lk ++ v
  CTQ27118.1 834 RRKNEQKDVAIVRIEQLYPFPHQAVQEALKAYAHV 868
                 34566778*********************998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (935 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.22s 00:00:00.89 Elapsed: 00:00:00.38
# Mc/sec: 7401.32
//
Query:       CTQ27119.1  [L=408]
Description: dihydrolipoyltranssuccinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-81  271.1   0.0    8.5e-81  270.8   0.0    1.1  1  2-oxoacid_dh     2-oxoacid dehydrogenases acyltransferase (ca
    8.5e-17   60.8   0.2    1.9e-16   59.6   0.2    1.6  1  Biotin_lipoyl    Biotin-requiring enzyme
    6.2e-13   48.9   2.6    1.2e-12   47.9   0.3    2.3  2  E3_binding       e3 binding domain
  ------ inclusion threshold ------
       0.16   11.4   0.1       0.77    9.1   0.1    1.9  2  Rhamnogal_lyase  Rhamnogalacturonate lyase family
          5    8.0   9.2         11    6.9   1.4    2.5  2  Stm1_N           Stm1


Domain annotation for each model (and alignments):
>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.8   0.0   2.4e-84   8.5e-81       3     233 .]     178     406 ..     176     406 .. 0.99

  Alignments for each domain:
  == domain 1  score: 270.8 bits;  conditional E-value: 2.4e-84
                   XXXXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH-GGGG-EE.EESEEEE--SS--E CS
  2-oxoacid_dh   3 eeervplsgirkaiakrlteskqeiphftlsdevdvtallelrkelkekeakeekakltlldflikavalAlkefPelnasvdeeekeivvkkhvni 99 
                   +e+rvp++++rk++a+rl e+k++++++t+++ev+++ +++lrk++ e+++k++ ++l +++f++kav+ Alk++Pe+nas+d+++  +v++++ ++
    CTQ27119.1 178 SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDD--VVYHNYFDV 272
                   689***********************************************98888*******************************..********* PP

                   EEE--------EEEE--GGG--HHHHHHHHHHHHHHHTTT---GGGTSS-SEEEE---------------TT-SEEEEE---.B--TTSTT-HT--- CS
  2-oxoacid_dh 100 GvAvatprGLlvPviknadkkslleiakelkelaekaregklkpedleggtftisNlGmlGvtsftPiinppqvaIlgvgrikerpvvkegelvvrk 196
                   ++Av+tprGL++Pv++++d +++++i+k++kela k r+gkl+ +dl+gg+fti+N G++G+ ++tPiinppq+aIlg+++ik+rp++++g++++ +
    CTQ27119.1 273 SMAVSTPRGLVTPVLRDVDLLGMADIEKNIKELAVKGRDGKLTVDDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGKVEILP 369
                   ************************************************************************************************* PP

                   EEEEEEEEETTT--HHHHHHHHHHHHHTT-HHXXXXX CS
  2-oxoacid_dh 197 vmtlslsaDHRvidGaeaarFlntlkkllenpeelll 233
                   +m+l ls+DHR+idG e + Fl ++k+lle+p++lll
    CTQ27119.1 370 MMYLALSYDHRLIDGRESVGFLVAIKELLEDPTRLLL 406
                   **********************************985 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.2   5.3e-20   1.9e-16       2      72 ..       5      76 ..       4      77 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 5.3e-20
                   EEEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl  2 eiksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 72
                   +i +P++ esv+++ v+++++k+Gd+V  ++vl+e+e++K++ e++a ++G++  +l +eG+tv + ++l +
     CTQ27119.1  5 DILVPDLPESVADAtVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGATVLSRQILGR 76
                   6889************************************************************99988876 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.3   3.3e-16   1.2e-12       3      36 .]     114     147 ..     113     147 .. 0.97
   2 ?    0.3   0.1      0.26   9.2e+02      15      34 ..     301     318 ..     298     320 .. 0.73

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 3.3e-16
                 E-HHHHHHHHHCT--TTTS---CTTTBE-HHHHC CS
  E3_binding   3 AsPaaRklAkelGidLsdvkGtGpgGRItkeDVl 36 
                 +sPa R+l +e+++d++++kGtG gGR+t+eDV+
  CTQ27119.1 114 LSPAIRRLLAEHNLDPAAIKGTGVGGRLTREDVE 147
                 7********************************7 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.26
                 T--TTTS---CTTTBE-HHH CS
  E3_binding  15 GidLsdvkGtGpgGRItkeD 34 
                 +i  ++++  G++G +t +D
  CTQ27119.1 301 NI--KELAVKGRDGKLTVDD 318
                 44..5555579******999 PP

>> Rhamnogal_lyase  Rhamnogalacturonate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00022      0.77     123     184 ..     228     289 ..     221     293 .. 0.78
   2 ?    2.4   0.0     0.025        90      26      57 ..     261     291 ..     257     329 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00022
  Rhamnogal_lyase 123 dkryiirrgvsGlymyailerlegwpdvd..ldqirivfklrkdkfdf.maiaddrqrimplded 184
                      +kr+ ir g   +y+ a++e l+ +p+v+  +d   +v+    + fd  ma++  r  + p+  d
       CTQ27119.1 228 EKRHGIRLGFMSFYVKAVVEALKRYPEVNasIDGDDVVYH---NYFDVsMAVSTPRGLVTPVLRD 289
                      79************************99733677788885...4455337777777777766555 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.025
  Rhamnogal_lyase  26 gddqvvvdnGivevtlskpdGlvtgikynGvd 57 
                      gdd v  +   v +++s p Glvt +    vd
       CTQ27119.1 261 GDDVVYHNYFDVSMAVSTPRGLVTPVLR-DVD 291
                      444444444578999*********9853.344 PP

>> Stm1_N  Stm1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.3     0.012        44      35      57 ..      86     108 ..      81     113 .. 0.78
   2 ?    6.9   1.4    0.0032        11      15      45 ..     126     174 ..     121     192 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.012
      Stm1_N  35 trsaKrptkpepPsqavrearne 57 
                  +s K ++k ++P+q+ +++ +e
  CTQ27119.1  86 ESSEKADAKASTPAQRQQASLEE 108
                 5799***********98877444 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0032
      Stm1_N  15 eeDpsq..................aapapppkevdkkstrsaKrptkpe 45 
                 + Dp +                   a+ap+p+e++++++++a  p++++
  CTQ27119.1 126 NLDPAAikgtgvggrltredvekhLAKAPAPAEAKAPAAAPAAAPAPQL 174
                 5566556666666666555555565677777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3107.02
//
Query:       CTQ27120.1  [L=388]
Description: succinyl-CoA synthetase beta chain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-84  280.9   0.0      7e-84  280.4   0.0    1.2  1  ATP-grasp_2  ATP-grasp domain
    6.3e-25   87.8   3.1    1.2e-24   86.9   3.1    1.5  1  Ligase_CoA   CoA-ligase
    1.1e-14   54.4   0.0      2e-14   53.6   0.0    1.4  1  ATP-grasp_5  ATP-grasp domain
    0.00077   19.3   0.0     0.0015   18.4   0.0    1.4  1  GARS_A       Phosphoribosylglycinamide synthetase, ATP-grasp 
  ------ inclusion threshold ------
      0.062   13.2   0.2       0.86    9.5   0.1    2.2  2  BAT          GAF and HTH_10 associated domain


Domain annotation for each model (and alignments):
>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.4   0.0   1.9e-87     7e-84       1     202 []       2     203 ..       2     203 .. 1.00

  Alignments for each domain:
  == domain 1  score: 280.4 bits;  conditional E-value: 1.9e-87
                  BE-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTSSSEEEEE--SSSTCCCTTCEEEESSHHHHHHHHHCCTTSEEE-TTS-TT-EEE--EEEE CS
  ATP-grasp_2   1 nlhEyqakeilakygvkvpegevaesaeeaeeaakklgekelvvKaQvlaGGRGKagGvklvkskeeakeaakellgkelvtkqtgkeGkkvekvlve 98 
                  nlhEyqak+++a+yg+++p g  +++++eaeeaa+k+g+  +vvK+Qv+aGGRGKagGvk+vkskee++++a+++lgk+lvt+qt+++G++v+++lve
   CTQ27120.1   2 NLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVKSKEEIRAFAEHWLGKRLVTYQTDANGQPVNQILVE 99 
                  79************************************************************************************************ PP

                  E---ECEEEEEEEEEETTTTEEEEEEESSTTS-HHHHHHH-GGGEEEEEEBTTTB--HHHHHHHHHHCT--CHHHHHHHHHHHHHHHHHHHTTEEEEE CS
  ATP-grasp_2  99 ealdikkElYlsivlDraskkvvviaSseGGvdiEevaakkPekiikvaidpakglkeeqareiakklglekelvkkaakiikklyklfveldatlvE 196
                   a+di+kElYl++v+Dr+s++vv++aS+eGGv+iE+va+++P+ i+k+aidp  g +++q re+a+klgle+++v++++ki++ l ++f+e+d+ l+E
   CTQ27120.1 100 AATDIDKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKIAIDPLAGPMPYQGRELAFKLGLEGKQVQQFTKIFMGLATIFLERDLALIE 197
                  ************************************************************************************************** PP

                  EEEEEE CS
  ATP-grasp_2 197 iNPLvv 202
                  iNPLv+
   CTQ27120.1 198 INPLVI 203
                  ****96 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   3.1   3.3e-28   1.2e-24       1     153 []     262     382 ..     262     382 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 3.3e-28
                 EESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHH CS
  Ligase_CoA   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkai 99 
                 +vnG++La+ +md++k++              g+e+++++d+G++a+          +++++ea+k++++d++vk++l++i++G+++++ +a++++ a+
  CTQ27120.1 262 MVNGAGLAMGTMDIVKLH--------------GGEPANFLDVGGGAT----------KERVTEAFKIILSDDNVKAVLVNIFGGIVRCDLIADGIIGAV 336
                 79****************..............***************..........9***************************************** PP

                 HHTT...--S-EEEEEECTTHH.....HHHHHHHTTTSSEEE-SSHHHHHHHHH CS
  Ligase_CoA 100 keakaegrelpvvarvaGteadpqelseqakaleeagveiasskaqalraakav 153
                  e+     ++pvv+r++G++a+      +ak+l+++g++i+++k  +++a+++v
  CTQ27120.1 337 AEVG---VNVPVVVRLEGNNAE-----LGAKKLADSGLNIIAAKSLTDAAQQVV 382
                 ***7...***************.....9*******************9999875 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   5.7e-18     2e-14      10     219 ..       3     215 ..       1     217 [. 0.87

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 5.7e-18
  ATP-grasp_5  10 Lteaeakelleaygipvvetrlassaeeaveaaeeigy.pvvlKivspdilhKtdvgGvrlnlkdaeevraaaeeil.ervkeks...peariegvlV 102
                  L e++ak+l++ yg+p++    ++++ ea eaa++ig+ p v+K+++     + ++gGv++ +k++ee+ra ae+ l +r+ +++    ++ ++++lV
   CTQ27120.1   3 LHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAgPWVVKCQVH-AGGRGKAGGVKV-VKSKEEIRAFAEHWLgKRLVTYQtdaNGQPVNQILV 98 
                  89**********************************8638*****975.678999******.*********998755155555551225566888899 PP

  ATP-grasp_5 103 qemakrggrElivgvteDpvFGpvilfGl..GGtavevlkdvavalpp..lnstlareliertkaskllkgvrgekkadlaaleellvrlsqLvvdlp 196
                  +  ++    El +g+  D +   v+ +    GG+++e +++ + +l    + + la  +  + +   +  g +g+   +++++ ++ + l+ +  +  
   CTQ27120.1  99 EAATD-IDKELYLGAVVDRSSRRVVFMASteGGVEIEKVAEETPHLIHkiAIDPLAGPMPYQGRELAFKLGLEGK---QVQQFTKIFMGLATIFLE-R 191
                  99988.99****************998644499999999999999988777889999999999999999999999...99***************9.8 PP

  ATP-grasp_5 197 eIreldinPllveeeg.vvalDar 219
                   ++ ++inPl+++++g +++lD++
   CTQ27120.1 192 DLALIEINPLVITKQGdLICLDGK 215
                  9*************999*****87 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.1e-07    0.0015       6     101 ..       8     115 ..       4     127 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.1e-07
                 HHHHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT....-EEEESSHHHHHHHHHHHC.......TS-TTCCCCSSEEEEE---.SE CS
      GARS_A   6 akdllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagK....gvivakseeealkavkeil.......ekkkfGeagekvviEelle.Ge 92 
                 ak+l++++g+p++   a t p ea+e  ++ +a  +VvK +  a+g+    gv+v+ks+ee  + ++  l       ++ + G+  +++++E   +  +
  CTQ27120.1   8 AKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRgkagGVKVVKSKEEIRAFAEHWLgkrlvtyQTDANGQPVNQILVEAATDiDK 106
                 79***********9999***********************999998733446*********99999887722222223345678888888887665345 PP

                 EEEEEEEEC CS
      GARS_A  93 Evsllalvd 101
                 E+ l a+vd
  CTQ27120.1 107 ELYLGAVVD 115
                 666666666 PP

>> BAT  GAF and HTH_10 associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00024      0.86      15      64 ..      95     142 ..      91     145 .. 0.90
   2 ?    1.1   0.0     0.087   3.1e+02      34     100 ..     276     343 ..     270     357 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00024
         BAT  15 dvlvalaaeldcrveleglvprsdgevlvfftvdgadpeevrdaaedlda 64 
                 ++lv++a++ d ++ l  +v+rs  +v+  ++++g+   e++++ae++++
  CTQ27120.1  95 QILVEAATDIDKELYLGAVVDRSSRRVVFMASTEGGV--EIEKVAEETPH 142
                 689********************************77..88888888876 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.087
         BAT  34 vprsdgevlvfftvdg.adpeevrdaaedldavedvrvvseeddgtlleltvsgpslastlaehGgtv 100
                 v  ++ge++ f+ v g a+ e+v++a+  + + ++v  v     g  +++ +  + ++ ++ae G+ v
  CTQ27120.1 276 VKLHGGEPANFLDVGGgATKERVTEAFKIILSDDNVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNV 343
                 77788999999999986778899999998888888888888888889999988999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3062.13
//
Query:       CTQ27121.1  [L=289]
Description: succinyl-CoA synthetase alpha chain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-31  108.8   0.9    1.6e-31  108.8   0.9    2.4  3  CoA_binding    CoA binding domain
    5.6e-20   71.7   0.6    8.4e-20   71.1   0.6    1.3  1  Ligase_CoA     CoA-ligase
    1.2e-11   44.6   0.1    1.9e-11   43.9   0.1    1.4  1  Succ_CoA_lig   Succinyl-CoA ligase like flavodoxin domain
    0.00022   21.7   0.1    0.00095   19.7   0.0    2.1  3  CoA_binding_2  CoA binding domain


Domain annotation for each model (and alignments):
>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.9   3.6e-35   1.6e-31       1      96 []       6      99 ..       6      99 .. 0.99
   2 ?    0.3   0.2      0.27   1.2e+03       2      39 ..     144     181 ..     143     239 .. 0.73
   3 ?   -3.1   0.0         3   1.4e+04      74      90 ..     258     274 ..     249     281 .. 0.65

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 3.6e-35
                 CTTEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEETTEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEEEEESST CS
  CoA_binding  1 dkdtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevlglpvyksvdeleektevdvavitvPaesaqeavdelveagikgiviiteg 96
                 +kdtkvi++G++g+  +g++h+++ + yg+++v+gv+p+k+gt++lglpv+++v+e++e t+++++vi+vPa++++++++e+++agik+i+ iteg
   CTQ27121.1  6 NKDTKVICQGFTGS--QGTFHSEQAIAYGTQMVGGVTPGKGGTTHLGLPVFNTVREAVEATGATATVIYVPAPFCKDSILEAIDAGIKLIITITEG 99
                 69************..******************************************************************************97 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.27
                  TTEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TT CS
  CoA_binding   2 kdtkviviGagglgiaglyhfkeklkygikavfgvnpr 39 
                  k++kv+++  +g+ + +++++  ++++g +  +g++++
   CTQ27121.1 144 KPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGD 181
                  67788888888888888888888888888888888765 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3
                  HHHHHHHHHHHTT-SEE CS
  CoA_binding  74 saqeavdelveagikgi 90 
                   a e+  +l +ag+k++
   CTQ27121.1 258 TADEKFAALEAAGVKTV 274
                  45566666666777766 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.6   1.9e-23   8.4e-20       1     152 [.     151     271 ..     151     272 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 1.9e-23
                 EESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHH CS
  Ligase_CoA   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkai 99 
                 ++++GtL+yea++++++               g +q++++++G+d  +         ++++i+ lk + +dp++++i++ +++G g++e++aa+++k +
  CTQ27121.1 151 VSRSGTLTYEAVKQTTDY--------------GFGQSTCVGIGGDPIP---------GSNFIDILKMFEEDPQTEAIVMIGEIG-GSAEEEAAAYIKDH 225
                 689***************..............***************9.........***************************.**********9986 PP

                 HHTT...--S-EEEEEECTTHH.....HHHHHHHTTTSSEEE-SSHHHHHHHH CS
  Ligase_CoA 100 keakaegrelpvvarvaGteadpqelseqakaleeagveiasskaqalraaka 152
                          +pvv ++aG +a++++++++a+a+  +g  +a+ k +al+aa++
  CTQ27121.1 226 VT-------KPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGV 271
                 43.......59************************************999975 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.1   4.3e-15   1.9e-11       1     137 [.     145     283 ..     145     287 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 4.3e-15
  Succ_CoA_lig   1 pGkialisqSGalalalldwaasrglgfskvvslGne..advdvadlleylaedpetkvillylEsirdgrkflsaarraarkkpvvvlksGrseag 95 
                   pGk++++s SG+l  + ++++++ g+g s++v +G       ++ d+l++++edp+t++i++  E  + +++ ++a  + + +kpvv + +G ++ +
    CTQ27121.1 145 PGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDpiPGSNFIDILKMFEEDPQTEAIVMIGEIGGSAEEEAAAYIKDHVTKPVVGYIAGVTAPK 241
                   79*********************************9622468999********************999988877777777778*********98766 PP

  Succ_CoA_lig  96 araaashtgalagsdavvdaafrqaGvlrvdsleelfdaael 137
                    +      + +ag + + d+ f+   +  v++++ l+d+ e+
    CTQ27121.1 242 GKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEA 283
                   665545557789999999977776666666666666666655 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.1e-07   0.00095      33     115 ..      39     129 ..      24     130 .. 0.84
   2 ?   -2.4   0.0       1.4   6.4e+03      88     101 ..     209     225 ..     187     234 .. 0.65
   3 ?   -2.4   0.0       1.5   6.6e+03      39      50 ..     267     278 ..     244     287 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.1e-07
                    ESSS-..SEETTEES----T......T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT....---HHHHHHHHHTT-EEE.ES-HHHHH CS
  CoA_binding_2  33 Vnpke..eeilgekvyaslaed..pepvdlvdvftppeatpeivkealalgakavwlqpg....sedeeaaelaeeagirvvgdrCilveg 115
                    V+p +  ++ lg +v+ ++ e+   +   + ++++p+  + + + ea+++g+k ++   +        ++  +++eag+r++g++C++v++
     CTQ27121.1  39 VTPGKggTTHLGLPVFNTVREAveATGATATVIYVPAPFCKDSILEAIDAGIKLIITITEgiptLDMLTVKVKLDEAGVRMIGPNCPGVIT 129
                    666666688899********843677777999************************99888885555677778999************975 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
                    T...---HHHHHHHHHT CS
  CoA_binding_2  88 g...sedeeaaelaeea 101
                    +   s +eeaa++ +++
     CTQ27121.1 209 EiggSAEEEAAAYIKDH 225
                    34447778888877765 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.5
                    EETTEES----T CS
  CoA_binding_2  39 eilgekvyasla 50 
                    e  g+k ++sla
     CTQ27121.1 267 EAAGVKTVRSLA 278
                    344555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2311.55
//
Query:       CTQ27122.1  [L=47]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 396.66
//
Query:       CTQ27123.1  [L=522]
Description: cytochrome d terminal oxidase, polypeptide subunit I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.4e-173  574.8  22.2   9.6e-173  574.6  22.2    1.0  1  Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
  ------ inclusion threshold ------
      0.026   14.2   0.3         11    5.8   0.2    2.8  2  DUF3704         Protein of unknown function (DUF3704)


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  574.6  22.2  1.1e-176  9.6e-173       1     418 []       7     501 ..       7     501 .. 0.99

  Alignments for each domain:
  == domain 1  score: 574.6 bits;  conditional E-value: 1.1e-176
  Cyt_bd_oxida_I   1 laRlqfaltavfHflfvpltlGlalllailetlylrtgdekykklakfwgklfainFavGvvtGivlefqfgtnWseysrfvGdifgapLaiEgl 95 
                     l+Rlqfalta++HflfvpltlG+a+llai+et+y+ +g++ yk+++kfwgklf+inFa+Gv+tG+++efqfgtnWs+ys++vGdifgapLaiEgl
      CTQ27123.1   7 LSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGL 101
                     8********************************************************************************************** PP

  Cyt_bd_oxida_I  96 lAFflEstflglmlfgwdrvskklhllatwlvaigtllSalwIlaanswmqtPvGaelnpdtgraeltdflavlfnpsalakflHtvlaalltaa 190
                     +AFflEstf+gl++fgwdr+ k +h+++twlva+g++lSalwIl+an+wmq+P + ++n +t+r+e+++f ++++np+a++kf+Htv+++++t+a
      CTQ27123.1 102 MAFFLESTFVGLFFFGWDRLGKVQHMAVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGA 196
                     *********************************************************************************************** PP

  Cyt_bd_oxida_I 191 ffvagvsawyllr.rekefarkslkialvvalvaallqallGdlsgkevaetqpaKlAAmeglwetee..aplslfgipdeeeeknefaieiPgl 282
                     +f++++s+wy+l+ r+ +fa++s++ia+ ++++a+l +++lGd+sg+e+ ++q++KlAA+e++wet+   a+++lfgipd+++++n+fai+iP++
      CTQ27123.1 197 MFILAISSWYMLKgRDFAFAKRSFAIAASFGMAAILSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPapAAFTLFGIPDQNAQTNHFAIQIPYA 291
                     **************999**************************************************9999************************ PP

  Cyt_bd_oxida_I 283 lsllatgsldgevkGlndlpk.................................................................eevPpvalv 312
                     l+++at+s+d++v Gl+dl+                                                                  + +P+va++
      CTQ27123.1 292 LGIIATRSVDKPVIGLKDLMVqheerirngmkayalleqlragstdqavrdqfnnvkkdlgyglllkrytpnvadateeqiakatkDSIPSVAPL 386
                     *******************879************************************************************************* PP

  Cyt_bd_oxida_I 313 fwsfrimvglgvlllllallalll.........rwllrllllaiplpfiaveaGWivtevGRqPWivygllrtadavspvsagevllslilflll 398
                     +++frimv++g+l+ll++ ++++          +wllr++++ +plp+iave+GW+v+e+GRqPW++ ++l+ta a s+++ag++++s++l++ l
      CTQ27123.1 387 YFAFRIMVACGILMLLIIGASFWSvirnrigekKWLLRAAFYGLPLPWIAVESGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMLLICGL 481
                     ********************999999*******99************************************************************ PP

  Cyt_bd_oxida_I 399 ylvLlvvevylllklikkgp 418
                     y+++lv+e++l++k+++kgp
      CTQ27123.1 482 YTLFLVAELFLMFKFARKGP 501
                     ******************97 PP

>> DUF3704  Protein of unknown function (DUF3704)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2    0.0012        11       7      13 ..     203     209 ..     202     211 .. 0.89
   2 ?    5.5   0.0    0.0015        14       1      16 [.     401     416 ..     401     417 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0012
     DUF3704   7 SFGYMPk 13 
                 S++YM+k
  CTQ27123.1 203 SSWYMLK 209
                 9*****9 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0015
     DUF3704   1 LLyVGASFGYMPksgI 16 
                 LL +GASF+   +++I
  CTQ27123.1 401 LLIIGASFWSVIRNRI 416
                 8999*****7777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 4240.26
//
Query:       CTQ27124.1  [L=379]
Description: cytochrome d terminal oxidase, subunit II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.2e-111  371.1  35.4   4.9e-111  370.9  35.4    1.0  1  Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.9  35.4  2.7e-115  4.9e-111       1     303 []       7     362 ..       7     362 .. 0.96

  Alignments for each domain:
  == domain 1  score: 370.9 bits;  conditional E-value: 2.7e-115
  Cyt_bd_oxida_II   1 lqliwflligvllagYvvldGfDlGvGillpllakkdeerrlllnsigpvWdgnevWLvtaggalfaaFPlayatlfsglylpllliLlglilR 94 
                      l++iw+llig+ll+g++v dGfD+GvG+l+++l+++d+err+++n+i+p+Wdgn+vWL+taggalfaa+P++ya++fsg+y++++l+L++l++R
       CTQ27124.1   7 LRFIWWLLIGILLIGFAVADGFDMGVGMLTRFLGRNDTERRIMINAIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFR 100
                      678******************************************************************************************* PP

  Cyt_bd_oxida_II  95 gvafefrskaeskrwrklwdlaffigSllaalllGvalgnllqGvpfdad.....ey.gflsdllnpfallvglllvalflllGalylalkteg 182
                      +v+f++rsk+e++rwr++wd+ +figS++++l++Gva+gnllqGvpf++d     +y g +++llnpf ll+g+++va++l++Ga+yl ++t g
       CTQ27124.1 101 PVGFDYRSKIEDTRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFHVDeylrlFYtGNFFQLLNPFGLLAGIVSVAMILTQGATYLQMRTVG 194
                      ***********99**********************************8777777766566668******************************* PP

  Cyt_bd_oxida_II 183 elqerarrlalvlalvllvllvvvllwtll.........................................l.vllllavlalllavlllrkkr 234
                      el+ r r++++v+alv+lv+++++++w+++                                         + v+ +l+v++ ll+v+++++++
       CTQ27124.1 195 ELHLRTRTVSMVAALVTLVCFALAGVWVYYgidgyvvksvidhtgpsnpltkevvreagawmvnfnnmpalWaVP-ALGVVLPLLTVVSTKADK 287
                      ***************************999*************************************99974255.79999999999999999* PP

  Cyt_bd_oxida_II 235 eglaflasaltvllvvlllavslfPyllpss......ltianaasseytlkvmlivalillplvlaytawlyrvf 303
                       ++afl+s+lt+++++l++++++fP+++pss      lt+++a+ss+ tl++m++va++++p++layt w+y+ +
       CTQ27124.1 288 GAWAFLFSSLTLACIILTAGIAMFPFIMPSStmlnasLTMWDATSSQRTLNLMTYVAIVFVPIILAYTSWCYWKM 362
                      *************************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       886  (0.0494171); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2658.83
//
Query:       CTQ27125.1  [L=38]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-14   53.9   6.7    1.6e-14   53.7   6.7    1.1  1  YbgT_YccB  Membrane bound YbgT-like protein


Domain annotation for each model (and alignments):
>> YbgT_YccB  Membrane bound YbgT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   6.7   8.8e-19   1.6e-14       1      26 [.       1      26 [.       1      27 [. 0.98

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 8.8e-19
   YbgT_YccB  1 MWYFaWiLGvlLAvlfgilnalwlEk 26
                MWYFaWiLG+lLA++fg++ al+lE+
  CTQ27125.1  1 MWYFAWILGTLLACAFGVITALALEH 26
                *************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 313.19
//
Query:       CTQ27126.1  [L=96]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-32  112.3   8.1    1.3e-32  112.0   8.1    1.1  1  Cyd_oper_YbgE  Cyd operon protein YbgE (Cyd_oper_YbgE)


Domain annotation for each model (and alignments):
>> Cyd_oper_YbgE  Cyd operon protein YbgE (Cyd_oper_YbgE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   8.1   7.1e-37   1.3e-32       1      78 [.      16      93 ..      16      94 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 7.1e-37
  Cyd_oper_YbgE  1 lRaLslllAlalaavvlwdpelfaaatsglshgllllllwavcagvvhGvGFrprkalwrllFsPllallilllalil 78
                   lRaLsll+Al+la++++wdp++faa+ts+l+++++ ll+wavc+gv+hGvGFrpr + w+ +F+Pl+a ++l+l+l++
     CTQ27126.1 16 LRALSLLMALLLAGCIFWDPSRFAAKTSELEIWHGFLLMWAVCSGVIHGVGFRPRAVHWQGIFCPLIADIVLALGLFF 93
                   7**************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 737.56
//
Query:       CTQ27127.1  [L=134]
Description: acyl-CoA thioesterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-19   67.9   0.7      1e-18   67.5   0.7    1.2  1  4HBT         Thioesterase superfamily
      5e-10   39.9   0.2    5.5e-10   39.8   0.2    1.0  1  4HBT_2       Thioesterase-like superfamily
    0.00025   20.4   0.0    0.00029   20.2   0.0    1.1  1  Acyl-ACP_TE  Acyl-ACP thioesterase


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.7   1.7e-22     1e-18       1      77 [.      20     103 ..      20     105 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 1.7e-22
                 TSSB-HHHHHHHHHHHHHHHHHHTTST.......TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCE CS
        4HBT   1 gGvvhgGvylallDeaagaalrslggr.......gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrl 77 
                 gGvv+++ y+a+ ++a++++lr+++++       + ++vv+ +++++++p+rl+d l+v+++++   +ts+v+++++++ ++++
  CTQ27127.1  20 GGVVYHASYVAFYERARTEMLRHHHFSqqvllaeRVAFVVRKMTLEYFAPARLDDMLEVQTEITSMRGTSLVFTQRIVNAENTV 103
                 69*****************************************************************************99876 PP

>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.2   9.3e-14   5.5e-10       4     119 ..      15     128 ..      12     132 .. 0.89

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 9.3e-14
      4HBT_2   4 ndvDlnghlnnarylryleearvkflertglksrsiarrgiglilssahvryrrplkfpdrltvefrvididaktliiehrflsnadgkkaarveeriv 102
                 +d+D+ g +++a+y++++e+ar ++l + +++++ + +++++ ++++ +++y  p+++ d l+v++ ++    ++l + +r+++ a++    ++e  iv
  CTQ27127.1  15 EDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQVLLAERVAFVVRKMTLEYFAPARLDDMLEVQTEITSMRGTSLVFTQRIVN-AENTVLNEAEVLIV 112
                 799****************************99**************************************************9.55666888888888 PP

      4HBT_2 103 vmdygkrskkapvPpel 119
                 ++d     k+  +P+ +
  CTQ27127.1 113 CVDPLLM-KPRALPKSI 128
                 8887554.666666665 PP

>> Acyl-ACP_TE  Acyl-ACP thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   4.8e-08   0.00029      27     131 ..      29     132 ..       3     134 .] 0.78

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.8e-08
  Acyl-ACP_TE  27 lnllqdvaanqveelGlsddkflkklnlvWvvakyeieierlpefgdkveietwaesenklfcyrdfkvrdekgekiieaksvfvlmdqetrrlsrvt 124
                  ++  +   ++ +++  +s++  l     + vv+k+ +e   + ++ d++e++t++ s++        ++ ++++ ++ ea+ + v +d    ++ +++
   CTQ27127.1  29 VAFYERARTEMLRHHHFSQQV-LLAERVAFVVRKMTLEYFAPARLDDMLEVQTEITSMRGTSLVFTQRIVNAENTVLNEAEVLIVCVDPLLMKPRALP 125
                  444444445555555555555.66677899******************************9999999******************************* PP

  Acyl-ACP_TE 125 deilaey 131
                  + i+ae+
   CTQ27127.1 126 KSIVAEF 132
                  9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1042.83
//
Query:       CTQ27128.1  [L=230]
Description: membrane spanning protein in TolA-TolQ-TolR complex [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-41  140.0   0.5      5e-41  139.4   0.5    1.2  1  MotA_ExbB  MotA/TolQ/ExbB proton channel family


Domain annotation for each model (and alignments):
>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.4   0.5   2.8e-45     5e-41       6     126 ..      79     207 ..      75     208 .. 0.93

  Alignments for each domain:
  == domain 1  score: 139.4 bits;  conditional E-value: 2.8e-45
                 HHHHHHHHHHH..HT......-HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSGGCTHHHHHHHHHH CS
   MotA_ExbB   6 ldrilkaglqe..kl......vdgaepeelrraleealsreeerlekglsilatigslaPllGLlGTVlGlieafqaladagsadlakvapgiaeALia 96 
                  ++i+++g++e  +l        +a  e   ra++ +++re+e+le+++++l t+gs++P++GL+GTV+G+++af al+++++a+l++vapgiaeALia
  CTQ27128.1  79 SEQIFYSGFKEfaRLhranshAPEAIVEGASRAMRISMNRELETLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIA 177
                 678999999977644788877888899999********************************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHX CS
   MotA_ExbB  97 TalGlvvAipavlaynklkrkverlvlele 126
                 Ta+Gl++Aipav+ayn+l+++v++l+l+++
  CTQ27128.1 178 TAIGLFAAIPAVMAYNRLNQRVNKLELNYD 207
                 ************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1713.40
//
Query:       CTQ27129.1  [L=142]
Description: membrane spanning protein in TolA-TolQ-TolR complex [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-23   83.4   0.2    1.6e-23   83.3   0.2    1.0  1  ExbD         Biopolymer transport protein ExbD/TolR
  ------ inclusion threshold ------
       0.18   12.2   0.0       0.33   11.3   0.0    1.4  1  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.2   1.8e-27   1.6e-23       2     129 ..      10     141 ..       9     142 .] 0.88

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 1.8e-27
        ExbD   2 kresaeinltpmiDvvflLLifFlvtaklkkpeplevdlPsssstqk.eveekelirisis..adgsiyldkkav...sveelaqklkerkakppdklt 94 
                 ++ ++ein++p++Dv+++LL++F+ ta++ +++ +evdlP+++++q  +  ++ ++++ +s   ++s+ ++++++     e++ +++k r + +++  +
  CTQ27129.1  10 RELKSEINIVPLLDVLLVLLLIFMATAPIITQS-VEVDLPDATESQAvKSNDDPPVIVEVSgvGQYSVKVGQETLsqlPPEQVIAEAKRRLEANEKT-V 106
                 67899****************************.************8555666677777774444557799999545599****************9.* PP

        ExbD  95 vaikadkdvsygklvevldtlkkagiekvslvttl 129
                   i + kdv+y++++++l+ l+ ag+++v+l+t++
  CTQ27129.1 107 FLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTKP 141
                 ********************************985 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.6e-05      0.33      26      80 ..      83     135 ..      73     142 .] 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.6e-05
                  HHHHHHHHHHHHHHHHHHHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEE CS
                  xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  26 grslsveeileevkelkaekg.vkevilgggepllypdfvellerlaklavpgiri 80 
                     l++e++++e+k+   e + + ++++gg     y++++++l  l+       ++
   CTQ27129.1  83 LSQLPPEQVIAEAKRRL-EANeKTVFLIGGAKDVPYDEIIKALNLLHSA--GVKSV 135
                  56789*********995.5553777777777777777777777777665..44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1072.46
//
Query:       CTQ27130.1  [L=441]
Description: membrane anchored protein in TolA-TolQ-TolR complex [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-37  126.5   0.0    3.4e-37  126.5   0.0    4.0  5  TolA           TolA C-terminal
    0.00092   19.6   0.0    0.00092   19.6   0.0    4.0  5  TonB_C         Gram-negative bacterial TonB protein C-termina
  ------ inclusion threshold ------
        3.2    6.6  40.2        5.3    5.9  40.2    1.3  1  THRAP3_BCLAF1  THRAP3/BCLAF1 family


Domain annotation for each model (and alignments):
>> TolA  TolA C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       1.2   7.3e+03      63      73 ..     131     141 ..     120     154 .. 0.57
   2 ?   -3.1   1.1       1.6   9.4e+03      63      79 ..     153     169 ..     140     183 .. 0.55
   3 ?   -5.6   4.4         3   1.8e+04      66      66 ..     190     190 ..     164     217 .. 0.58
   4 ?  -10.0   9.9         3   1.8e+04      66      66 ..     291     291 ..     231     315 .. 0.70
   5 !  126.5   0.0   5.7e-41   3.4e-37       3      96 .]     346     438 ..     344     438 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.2
                 HHHHHHHH.HC CS
        TolA  63 lCqAalaAvak 73 
                   +Aa aA ak
  CTQ27130.1 131 AAKAAAAAKAK 141
                 23333333333 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.6
                 HHHHHHHH.HCTS---- CS
        TolA  63 lCqAalaAvakvakiPk 79 
                   +Aa  A ak++   k
  CTQ27130.1 153 AAKAAAEAKAKADAQAK 169
                 44455555444444333 PP

  == domain 3  score: -5.6 bits;  conditional E-value: 3
                 H CS
        TolA  66 A 66 
                 A
  CTQ27130.1 190 A 190
                 2 PP

  == domain 4  score: -10.0 bits;  conditional E-value: 3
                 H CS
        TolA  66 A 66 
                 A
  CTQ27130.1 291 A 291
                 2 PP

  == domain 5  score: 126.5 bits;  conditional E-value: 5.7e-41
                 SSS-TTCCHHHHHHHHHHHHHHHTTTTTGGGGTT--EEEEEEEETTSEEEEEEEEEE-HHHHHHHHHH.HCTS-----SSHHHHHHHTTEEEEE CS
        TolA   3 aaksgavgaevdkYaavikkaiqsrllkedsfkgktCrvkikLapdGtllsvkkegGdpalCqAalaAvakvakiPkppsqdvyeklKeinlev 96 
                 ++k+ a+ga++++Ya++ik+ai+s++++++s++gktC+++ikLapdG+ll++++egGdpalCqAalaA a++ak+Pkppsq+vye +K+++l++
  CTQ27130.1 346 NTKNSASGADINNYAGQIKSAIESKFYDASSYAGKTCTLRIKLAPDGLLLNIQSEGGDPALCQAALAA-ARQAKFPKPPSQAVYEVFKNAPLDF 438
                 578999**************************************************************.***********************97 PP

>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   1.5       1.2   7.4e+03      45      64 ..     128     147 ..     113     160 .. 0.62
   2 ?   -5.1   4.5         3   1.8e+04      52      52 ..     175     175 ..     143     213 .. 0.62
   3 ?   -4.9   4.4         3   1.8e+04      71      71 ..     232     232 ..     195     280 .. 0.66
   4 ?   -3.0   0.1       1.7     1e+04      45      54 ..     289     298 ..     275     310 .. 0.59
   5 !   19.6   0.0   1.5e-07   0.00092      17      67 ..     381     427 ..     378     440 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
                 HHHHHHHHTT-EE-TT--EE CS
      TonB_C  45 dkaAleavrkwkfkpapkng 64 
                 ++aA +a+ ++k k+  + +
  CTQ27130.1 128 EEAAAKAAAAAKAKADAQAK 147
                 45566665555544444433 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 3
                 H CS
      TonB_C  52 v 52 
                 +
  CTQ27130.1 175 A 175
                 1 PP

  == domain 3  score: -4.9 bits;  conditional E-value: 3
                 . CS
      TonB_C  71 i 71 
                 +
  CTQ27130.1 232 A 232
                 1 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 1.7
                 HHHHHHHHTT CS
      TonB_C  45 dkaAleavrk 54 
                 dkaA +a+ k
  CTQ27130.1 289 DKAAKAAAAK 298
                 3444444333 PP

  == domain 5  score: 19.6 bits;  conditional E-value: 1.5e-07
                 EEEEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT-EE-TT--EEE.. CS
      TonB_C  17 tvtveftidpdGnvtnvkvvkssgseiLdkaAleavrkwkfkpapkngkpv 67 
                 t+t+++++ pdG + n++   +++   L +aAl+a+r++kf+ +p +  +v
  CTQ27130.1 381 TCTLRIKLAPDGLLLNIQSEGGDP--ALCQAALAAARQAKFPKPPSQ--AV 427
                 689*************99999988..9**************999986..44 PP

>> THRAP3_BCLAF1  THRAP3/BCLAF1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  40.2    0.0009       5.3     223     425 ..      71     270 ..      43     366 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0009
  THRAP3_BCLAF1 223 sfqkRYleeqksrkyghesengkekeqkearlekekskrkskwkeehaldsyqekeeqrskeeqesrsaesespe..sykyrhkfekklaefeksf 316
                    +++ R  +eq  ++ ++++e  +ek+  +a++e+ k+ ++++++ ++a+++ +e+++q++++ ++ + a + +++  + + ++   k +a + k  
     CTQ27130.1  71 QASARRAAEQREKQAQQQAEELREKQ--AAEQERLKQLEQERLQAQEAAKEAKEQQKQAEEAAAKAAAAAKAKADaqAKEAQEAAAK-AAAEAKAK 163
                    23333344444455555555555555..55555555555555555555555555555555444433333333333222222222222.22222222 PP

  THRAP3_BCLAF1 317 sdgskekyeeee..kkskskvslgnresqefseerarkteelqveesakekskkeeaastdemeedvylerikkkkeersakevklrkeselssps 410
                    +d++++++e+         k    + ++ +  + +a+k+ e +  ++a e +kk+eaa  ++ ++++ ++  ++  ++ +a++++++k +e     
     CTQ27130.1 164 ADAQAKAAEQAAakAAADAKKQ-AEAAAAK-AAAEAKKQAEAEAAKAAAEAQKKAEAAAAKKAQQEAEKKAQQEAAKQAAAEKAAAEKAAEKAA-- 255
                    2222222222221111111111.1111222.223334444444445555555555555544444444444433333333333333344333222.. PP

  THRAP3_BCLAF1 411 neneesreklavkes 425
                    +++   ++++a+k  
     CTQ27130.1 256 AQKAAAEKAAAEKAA 270
                    111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4673  (0.260639); expected 358.6 (0.02)
Passed bias filter:                     1227  (0.0684366); expected 358.6 (0.02)
Passed Vit filter:                       827  (0.0461264); expected 17.9 (0.001)
Passed Fwd filter:                       334  (0.018629); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 4.24u 0.39s 00:00:04.63 Elapsed: 00:00:00.79
# Mc/sec: 1688.81
//
Query:       CTQ27131.1  [L=430]
Description: periplasmic protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-40  134.5   2.6    2.7e-11   43.1   0.1    6.4  6  PD40             WD40-like Beta Propeller Repeat
    6.1e-34  116.4   0.0    1.4e-33  115.2   0.0    1.6  1  TolB_N           TolB amino-terminal domain
    1.7e-11   43.5   0.0    3.8e-08   32.5   0.0    2.8  2  DPPIV_N          Dipeptidyl peptidase IV (DPP IV) N-terminal 
    2.4e-09   36.3   0.1    0.00049   18.9   0.0    3.3  3  Pectate_lyase22  Oligogalacturonate lyase
    4.1e-09   36.6   3.8    3.7e-05   23.6   0.6    4.1  3  Gmad1            Lipoprotein LpqB beta-propeller domain
     0.0014   17.6   0.0      0.018   13.9   0.0    2.1  2  Peptidase_S9_N   Prolyl oligopeptidase, N-terminal beta-prope


Domain annotation for each model (and alignments):
>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   2.2e-08   6.6e-05      12      33 ..     203     223 ..     197     226 .. 0.87
   2 !   37.8   0.0   4.3e-13   1.3e-09       2      38 .]     237     272 ..     236     272 .. 0.95
   3 !   43.1   0.1     9e-15   2.7e-11       2      37 ..     281     315 ..     280     316 .. 0.96
   4 !    6.8   0.0    0.0022       6.6      16      32 ..     339     354 ..     334     358 .. 0.89
   5 !   17.3   0.0   1.1e-06    0.0034       3      30 ..     369     396 ..     367     403 .. 0.89
   6 ?   -0.1   0.1      0.32   9.5e+02      12      18 ..     422     428 ..     413     428 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.2e-08
                 EEEEE-TTSSEEEEEEECT.TC CS
        PD40  12 gaPsfSPDGkrlaFsSdRgsGk 33 
                 ++P++SPDG++la++ + + G+
  CTQ27131.1 203 MSPAWSPDGSKLAYVTFES-GR 223
                 79**************998.76 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 4.3e-13
                 EE--SSSS.EEEEEE-TTSSEEEEEEECT.TCEEEEE CS
        PD40   2 krltntpgnegaPsfSPDGkrlaFsSdRgsGkpdIyv 38 
                 +++ ++p+++gaP+fSPDG++laF+ +++ G+ ++yv
  CTQ27131.1 237 RQIASFPQHNGAPAFSPDGSKLAFALSKT-GSLNLYV 272
                 688899***********************.******8 PP

  == domain 3  score: 43.1 bits;  conditional E-value: 9e-15
                 EE--SSSS.EEEEEE-TTSSEEEEEEECT.TCEEEE CS
        PD40   2 krltntpgnegaPsfSPDGkrlaFsSdRgsGkpdIy 37 
                 +++tn+ +n+++Ps+ PD + laF+Sd+  G+p++y
  CTQ27131.1 281 RQVTNGRSNNTEPSWFPDSQNLAFTSDQA-GRPQVY 315
                 79***************************.*****9 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0022
                 E-TTSSEEEEEEECT.T CS
        PD40  16 fSPDGkrlaFsSdRgsG 32 
                 +S DGk+++ +S+ g G
  CTQ27131.1 339 VSADGKTMVMVSSAG-G 354
                 69**********987.6 PP

  == domain 5  score: 17.3 bits;  conditional E-value: 1.1e-06
                 E--SSSS.EEEEEE-TTSSEEEEEEECT CS
        PD40   3 rltntpgnegaPsfSPDGkrlaFsSdRg 30 
                 +++++++ ++ Ps+ P+G++ ++sS++g
  CTQ27131.1 369 QVLSSTFLDETPSLAPNGTMVIYSSSQG 396
                 7999*********************998 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.32
                 EEEEE-T CS
        PD40  12 gaPsfSP 18 
                  +P++SP
  CTQ27131.1 422 KSPAWSP 428
                 58****9 PP

>> TolB_N  TolB amino-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.0   4.7e-37   1.4e-33       1     100 [.      23     121 ..      23     125 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.2 bits;  conditional E-value: 4.7e-37
                 BXXEEEESGGGSEEEEE---EESSSS.S-SS-HHHHHHHHHHHTTSEEE--GGG-S---SSGGG--HHHHHTTT-SEEEEEEEE-TTSE.EEEEEEEEE CS
      TolB_N   1 leieItkggaealpiAvvpfksegsaeelaediseviaaDLerSGlFrpldksafpqkpsseaevdfadWkalgadalvtGsvtesgdgrlkvefrLwD 99 
                 ++ieIt+g+++a+pi vvpf+++g++ +++ed+  ++aaDL++SG+F+pld+s++pq+p+s++ev+ a+W+alg+da+v+G+vt+++dg+++v ++L+D
  CTQ27131.1  23 VRIEITQGVDSARPIGVVPFQWAGQG-AAPEDVGGIVAADLRNSGKFNPLDRSRLPQQPTSAQEVQPAAWSALGIDAVVVGQVTQNPDGSYQVAYQLVD 120
                 58************************.************************************************************************ PP

                 - CS
      TolB_N 100 v 100
                 +
  CTQ27131.1 121 T 121
                 8 PP

>> DPPIV_N  Dipeptidyl peptidase IV (DPP IV) N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00031      0.93      44     119 ..     201     218 ..     167     241 .. 0.77
   2 !   32.5   0.0   1.3e-11   3.8e-08     240     346 ..     249     349 ..     221     357 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00031
                 .BSEEEEESSTTEEEEEETTEEEEESTTTSEEEECES-STTTEEESB--HHHHHHTSSSSBEEEE-TTSSEEEEEE CS
     DPPIV_N  44 klqlakwSPagdklafvrnnnLyvrelatgkeiqlTsdgsagifnGvadWvyeEEvlgsnsavwWspdgsrlaylr 119
                 +l+ + wSP+g kla+v                                                           
  CTQ27131.1 201 PLMSPAWSPDGSKLAYV----------------------------------------------------------T 218
                 56666666666666666..........................................................3 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 1.3e-11
                 EEE-TTTSSEEEEEEETTSSEEEEEEESSS-C.EEESS-SSS-EEEEEEEETTTTEEEEEESSSETTEBEEEEEESSCTTEEEESSTTTSEEEEEEE-T CS
     DPPIV_N 240 vhflkrdesgflwisekdGfkHLylfdldgkseikqlTsGeweVtsilavdekrdlvyFtatkdsPlerhlYsvslesggeltrltdeegdhysasfsp 338
                 ++f+ +d+s++ ++++k+G   Ly++dl +++ i+q+T+G  + t++ ++ +  +++ Ft+ +   ++ ++Y+v+++ gg+++r+t e+ ++ +a +s+
  CTQ27131.1 249 PAFS-PDGSKLAFALSKTGSLNLYVMDLGSGQ-IRQVTNGRSNNTEPSWFPDS-QNLAFTSDQ--AGRPQVYKVNIN-GGTPQRITWEGSQNQDADVSA 341
                 4455.9**************************.****************9877.567788877..67**********.**********99998999999 PP

                 TSSEEEEE CS
     DPPIV_N 339 sgkyyvlk 346
                 +gk +v+ 
  CTQ27131.1 342 DGKTMVMV 349
                 99888765 PP

>> Pectate_lyase22  Oligogalacturonate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0012       3.7     242     270 ..     204     232 ..     185     247 .. 0.77
   2 !   18.9   0.0   1.6e-07   0.00049      42      83 ..     250     291 ..     239     292 .. 0.95
   3 !    8.3   0.0   0.00028      0.83     355     382 ..     292     319 ..     290     322 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0012
  Pectate_lyase22 242 hevwvpdgsalayvsylkgsterviysad 270
                         w pdgs layv++  g++  v+ +  
       CTQ27131.1 204 SPAWSPDGSKLAYVTFESGRSALVVQTLA 232
                      567****************9988876554 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1.6e-07
  Pectate_lyase22  42 cftrdgskllfggafdgprnyylldlntqqavqltegkgdnt 83 
                      +f+ dgskl f+ +  g+ n y++dl + q  q+t+g+ +nt
       CTQ27131.1 250 AFSPDGSKLAFALSKTGSLNLYVMDLGSGQIRQVTNGRSNNT 291
                      699*************************************98 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00028
  Pectate_lyase22 355 hpsftpddkqvlftsdvegkpalylakv 382
                       ps+ pd +++ ftsd  g+p +y +++
       CTQ27131.1 292 EPSWFPDSQNLAFTSDQAGRPQVYKVNI 319
                      69**********************9886 PP

>> Gmad1  Lipoprotein LpqB beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.039   1.2e+02     136     155 ..      97     116 ..      80     137 .. 0.80
   2 !    8.5   0.0   0.00052       1.5      21      55 ..     198     232 ..     192     241 .. 0.84
   3 !   23.6   0.6   1.2e-08   3.7e-05      24     138 ..     245     358 ..     234     427 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.039
       Gmad1 136 gkvyvavVvrdadGqkslta 155
                 + v+v+ V++++dG++++ +
  CTQ27131.1  97 DAVVVGQVTQNPDGSYQVAY 116
                 57899999999999777765 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00052
       Gmad1  21 gavdlrsaAvSrdgqqvaavtapdggrtLvvgsyg 55 
                 +++ l s+A S+dg+++a vt ++g++ Lvv++  
  CTQ27131.1 198 SSQPLMSPAWSPDGSKLAYVTFESGRSALVVQTLA 232
                 567899***************99999999998764 PP

  == domain 3  score: 23.6 bits;  conditional E-value: 1.2e-08
       Gmad1  24 dlrsaAvSrdgqqvaavtapdggrtLvvgsyg.geasevlegg.sltrpSwdrd.galWvvedgaevvravrddaegevavveVdasalragpvtelrv 119
                 +  ++A S+dg+++a+  +++g+ +L+v++ g g+ ++v++g+ + t+pSw +d ++l    d+a+ +++ +  +   ++++++++++ +    ++  v
  CTQ27131.1 245 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLGsGQIRQVTNGRsNNTEPSWFPDsQNLAFTSDQAGRPQVYK-VNINGGTPQRITWEGSQN---QDADV 339
                 55789************************99845788999777699******99877766667777766666.66788999***9999997...9999* PP

       Gmad1 120 SrDGtRaAvivekdgggkv 138
                 S DG   +++++  g++++
  CTQ27131.1 340 SADGKTMVMVSSAGGQQHI 358
                 **********977666655 PP

>> Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.043   1.3e+02     138     190 ..     167     220 ..     161     236 .. 0.72
   2 !   13.9   0.0   5.9e-06     0.018     130     247 ..     250     350 ..     246     371 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.043
                     EEEEEEETT.SSEEEEEEEETTTT.EEEEEEEEEEESEEEEECTTSSEEEEEESS CS
  Peptidase_S9_N 138 lAyslsksG.sdwytirvkdietg.edlpdeledvkfsgivWaadekgffYtryd 190
                     +Ay ++k+G +  y++rv d +   ++l  + +++ +s  +W +d++ + Y++ +
      CTQ27131.1 167 IAYVVQKNGgQYPYELRVSDYDGYnQFLVHRSSQPLMS-PAWSPDGSKLAYVTFE 220
                     67877776514568888888887635677777777777.8888888888888876 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5.9e-06
                     EE-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEE.EEECTTSSEEEEEESS-SSS-TSTSB-S-BEEEEEETTS-GGG-EEEES CS
  Peptidase_S9_N 130 avsedgkllAyslsksGsdwytirvkdietgedlpdeledvkfsg.ivWaadekgffYtrydkedersdtdtnlnqkvyrhkLGtaqseDelvfe 223
                     a+s+dg+ lA++lsk+Gs   ++ v+d+ +g+ + ++ ++ + ++  +W +d++ + +t+ d + +r++        vy+ ++  +  + +  +e
      CTQ27131.1 250 AFSPDGSKLAFALSKTGS--LNLYVMDLGSGQ-IRQVTNGRSNNTePSWFPDSQNLAFTS-D-QAGRPQ--------VYKVNINGGTPQ-RITWE 330
                     79***************9..79*********9.666666655555599**********99.4.677777........888888777777.77777 PP

                     -TTGTTBEEEEEE-TTSSEEEEEE CS
  Peptidase_S9_N 224 eeeepkwllgaersedgkylfiss 247
                     + +++     a++s+dgk++++ s
      CTQ27131.1 331 GSQNQD----ADVSADGKTMVMVS 350
                     666654....45577777765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3421.27
//
Query:       CTQ27132.1  [L=174]
Description: peptidoglycan-associated outer membrane lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-22   78.0   0.0    9.3e-22   77.2   0.0    1.4  1  OmpA      OmpA family


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.0   5.2e-26   9.3e-22       1      95 []      73     168 ..      73     168 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 5.2e-26
                 .B-TTS--B-GGGHHHHHHHHHHHH.S-S--EEEEE---S---HHHHHHHHHHHHHHHHHHHHHTTSSGGGEEEEE-TT--------------EE. CS
        OmpA   1 yFapgsseLtpkaksaldkiaellk.kpeqkitveGhtdaagseernweLSqkRAeaVanylqnegvppsrisvsgyGaerpitanntaekkarnr 95 
                 yF+ ++++++      ld  a++l+ +p++k+tveGh+d++g+ e+n +L ++RA+aV+ ylq +gv++++is+++yG+e+p+  + ++++ a+nr
  CTQ27132.1  73 YFDLDKYDIRSDFAAMLDAHANFLRsNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNR 168
                 8************************999999*********************************************************99999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1290.05
//
Query:       CTQ27133.1  [L=264]
Description: putative RNA binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-25   86.7  11.9    1.3e-24   86.0  11.9    1.3  1  TolA_bind_tri  TolA binding protein trimerisation
    3.2e-21   74.5   0.2    1.1e-06   28.8   0.0    3.6  3  TPR_6          Tetratricopeptide repeat
    1.3e-09   38.5   0.1    1.5e-05   25.6   0.0    3.6  3  TPR_16         Tetratricopeptide repeat
    2.4e-09   36.6   0.0     0.0022   18.0   0.1    3.6  4  TPR_2          Tetratricopeptide repeat
    6.2e-09   35.9   1.7    0.00066   19.4   0.2    2.5  2  YfiO           Outer membrane lipoprotein
    2.3e-06   27.8   4.1      0.041   14.0   0.2    3.4  3  TPR_18         Tetratricopeptide repeat
    7.8e-06   25.7   0.1       0.29   11.5   0.0    3.1  3  TPR_8          Tetratricopeptide repeat
      8e-05   23.1   0.0        1.9    9.5   0.0    3.8  3  TPR_14         Tetratricopeptide repeat
    0.00034   21.0   4.2      0.014   15.9   0.1    3.6  3  TPR_19         Tetratricopeptide repeat
    0.00064   19.9   0.2       0.92   10.0   0.4    2.8  2  TPR_17         Tetratricopeptide repeat
     0.0025   18.3   1.8        6.5    7.4   0.0    3.7  4  DUF4810        Domain of unknown function (DUF4810)
     0.0032   17.2  10.2      0.033   13.9   0.3    3.1  3  TPR_21         Tetratricopeptide repeat-like domain
     0.0034   16.3   0.9     0.0048   15.8   0.9    1.1  1  Spc7           Spc7 kinetochore protein
     0.0065   15.9   3.0      0.011   15.2   3.0    1.2  1  DUF3552        Domain of unknown function (DUF3552)
  ------ inclusion threshold ------
      0.013   15.9   2.7      0.023   15.1   2.7    1.5  1  HrpB7          Bacterial type III secretion protein (HrpB7)
      0.019   15.2   0.2      0.097   12.9   0.2    2.2  2  ANAPC3         Anaphase-promoting complex, cyclosome, subunit
       0.03   13.9  18.7       0.88    9.1  13.3    3.0  3  MscS_porin     Mechanosensitive ion channel porin domain
      0.035   14.2   0.8      0.066   13.3   0.8    1.4  1  COG2           COG (conserved oligomeric Golgi) complex compo
      0.084   12.7   1.2        2.2    8.2   0.2    2.8  2  TPR_1          Tetratricopeptide repeat
       0.11   11.5   2.7       0.16   10.9   2.7    1.2  1  IFT57          Intra-flagellar transport protein 57
       0.16   11.9   0.1       0.64   10.0   0.0    2.0  1  nos_propeller  Nitrous oxide reductase propeller repeat
       0.25   11.0   7.3        4.3    7.1   0.8    4.0  4  TPR_11         TPR repeat
       0.82    7.6   3.5        1.2    7.0   3.5    1.1  1  Prominin       Prominin
       0.89   10.2  11.1        1.9    9.2  10.5    1.8  2  SlyX           SlyX


Domain annotation for each model (and alignments):
>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0  11.9   1.8e-27   1.3e-24       1      71 [.      37     107 ..      37     112 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 1.8e-27
  TolA_bind_tri   1 sledrvarLErilearsqlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrklea 71 
                    s+edrv++LEri++a+sqll++lqqql+++q+++++LRGqi+e+qyql+q+ erQ+++ l++D++++   a
     CTQ27133.1  37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQTDIDSLRGQIQENQYQLNQIVERQKQILLQIDSLSSGGGA 107
                    79**************************************************************9987655 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.3e-06   0.00096       4      33 .]     146     176 ..     145     176 .. 0.93
   2 !   22.0   0.1   2.2e-07   0.00016       2      33 .]     182     213 ..     181     213 .. 0.95
   3 !   28.8   0.0   1.5e-09   1.1e-06       1      33 []     218     250 ..     218     250 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHH.HHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   4 yklalsyrk.lgdtdkAlealerlikeYPdS 33 
                 y++a ++ k + + d+A+ a+++++k+YPdS
  CTQ27133.1 146 YNAAIALVKdASRQDDAMVAFQNFVKKYPDS 176
                 788999999899******************9 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 2.2e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPdS 33 
                 A y+l+++ ++ g++d+A  ++ +++k+YP+S
  CTQ27133.1 182 ANYWLGQLNYNKGRKDDAAFYFASVVKNYPKS 213
                 569********88*****************98 PP

  == domain 3  score: 28.8 bits;  conditional E-value: 1.5e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlikeYPdS 33 
                 dA++k +  ++  gdt+kA++ ++++i+++P++
  CTQ27133.1 218 DAMFKVGVIMQDKGDTAKAKAVYQQVINKFPGT 250
                 8**********988*****************85 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0     2e-08   1.5e-05      12      68 .]     158     214 ..     146     214 .. 0.89
   2 !   14.2   0.0   7.2e-05     0.053       9      42 ..     192     225 ..     191     227 .. 0.93
   3 !    7.7   0.0    0.0076       5.7       9      40 ..     229     260 ..     228     263 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2e-08
      TPR_16  12 dyddAaaaleaalkrdpssPd...aaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 + ddA  a++ ++k++   Pd    + A ++lg++ + +gr ++Aa ++++ ++++p++p
  CTQ27133.1 158 RQDDAMVAFQNFVKKY---PDstyQPNANYWLGQLNYNKGRKDDAAFYFASVVKNYPKSP 214
                 5589999*********...66666**********************9999999****987 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 7.2e-05
      TPR_16   9 ragdyddAaaaleaalkrdpssPdaaeAllllgd 42 
                 + g+ ddAa ++  ++k++p+sP a++A++  g+
  CTQ27133.1 192 NKGRKDDAAFYFASVVKNYPKSPKAPDAMFKVGV 225
                 67999*************************9997 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0076
      TPR_16   9 ragdyddAaaaleaalkrdpssPdaaeAllll 40 
                 + gd ++A a++++++ ++p++  a +A+  l
  CTQ27133.1 229 DKGDTAKAKAVYQQVINKFPGTDGAKQAQKRL 260
                 6799***************9999999998776 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0         3   2.3e+03      20      31 ..     142     153 ..     140     156 .. 0.72
   2 ?   -1.0   0.0       3.5   2.6e+03      18      33 ..     160     175 ..     157     176 .. 0.87
   3 !   18.0   0.1     3e-06    0.0022       2      33 ..     181     212 ..     180     213 .. 0.93
   4 !   13.6   0.0   7.5e-05     0.056       1      33 [.     217     249 ..     217     250 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 3
       TPR_2  20 AleafekAleld 31 
                 A  ++++A++l 
  CTQ27133.1 142 ANTDYNAAIALV 153
                 667888888875 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3.5
       TPR_2  18 eeAleafekAleldPn 33 
                 ++A  af+  ++ +P+
  CTQ27133.1 160 DDAMVAFQNFVKKYPD 175
                 789999**99999998 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 3e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                  a+y+lG++ y++g+ ++A+ +f  +++ +P+
  CTQ27133.1 181 NANYWLGQLNYNKGRKDDAAFYFASVVKNYPK 212
                 699*********************99999997 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 7.5e-05
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 ++a +  G +   +gd ++A++ +++++   P+
  CTQ27133.1 217 PDAMFKVGVIMQDKGDTAKAKAVYQQVINKFPG 249
                 578999**********************99985 PP

>> YfiO  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.2   8.9e-07   0.00066      89     133 ..     143     186 ..     135     190 .. 0.78
   2 !   18.0   0.1   2.5e-06    0.0019       6      76 ..     181     251 ..     179     257 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 8.9e-07
                 HHHHHSHSCTTTS-THHHHHHHHHHHHHHHHSTTSTTHHHHHHHH CS
        YfiO  89 alaqarellrskrdpesarqafedfkklvekyPdseYaadakkrl 133
                 + +  + +    +d + + +a+  f+++v+kyPds+Y ++a+  l
  CTQ27133.1 143 NTDYNAAI-ALVKDASRQDDAMVAFQNFVKKYPDSTYQPNANYWL 186
                 44444444.5589***************************98766 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 2.5e-06
                 HHHHHHHHHHHHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SSST CS
        YfiO   6 selYekgqealqkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlrlyPthk 76 
                 ++ Y  gq +++kg   +A+ ++ ++ + yP sp a++a+ ++   +  ++d+a+a a +++ ++++P+ +
  CTQ27133.1 181 NANYWLGQLNYNKGRKDDAAFYFASVVKNYPKSPKAPDAMFKVGVIMQDKGDTAKAKAVYQQVINKFPGTD 251
                 67788999************************************************************876 PP

>> TPR_18  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   5.5e-05     0.041     112     142 ..     153     183 ..     137     186 .. 0.86
   2 ?    5.8   0.2     0.019        14     120     142 ..     198     220 ..     188     223 .. 0.81
   3 !    8.4   0.0    0.0029       2.2     106     145 .]     221     260 ..     219     260 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.5e-05
      TPR_18 112 drdteaakaafrdfkrLlsryPnseYaaDaa 142
                  +d + + +a+  f++ +++yP+s Y ++a+
  CTQ27133.1 153 VKDASRQDDAMVAFQNFVKKYPDSTYQPNAN 183
                 589999999******************9996 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.019
      TPR_18 120 aafrdfkrLlsryPnseYaaDaa 142
                 +a   f +++++yP+s  a+Da 
  CTQ27133.1 198 DAAFYFASVVKNYPKSPKAPDAM 220
                 455579***************96 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0029
      TPR_18 106 vsldrsdrdteaakaafrdfkrLlsryPnseYaaDaakrl 145
                 +++  + +d+ ++ +a + ++++++++P  + a+ a+krl
  CTQ27133.1 221 FKVGVIMQDKGDTAKAKAVYQQVINKFPGTDGAKQAQKRL 260
                 5666677888999999999*******************97 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       5.8   4.4e+03      16      27 ..     145     156 ..     138     161 .. 0.76
   2 !   11.5   0.0   0.00039      0.29       3      33 ..     182     212 ..     180     213 .. 0.90
   3 !   10.6   0.0   0.00071      0.53       2      28 ..     218     244 ..     217     245 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 5.8
                 -HHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyeka 27 
                 dy++A++  + a
  CTQ27133.1 145 DYNAAIALVKDA 156
                 899999876655 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00039
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 a y+lg++  ++g+++ A  y+  +++  p+
  CTQ27133.1 182 ANYWLGQLNYNKGRKDDAAFYFASVVKNYPK 212
                 89********************999987776 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00071
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 +a+++ g i +++gd  +Ak++y++++
  CTQ27133.1 218 DAMFKVGVIMQDKGDTAKAKAVYQQVI 244
                 57889999999**************98 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.49   3.7e+02      13      34 ..     155     176 ..     144     178 .. 0.71
   2 !    9.5   0.0    0.0026       1.9       1      37 [.     180     216 ..     180     223 .. 0.92
   3 ?    6.6   0.0     0.022        17      11      38 ..     227     254 ..     217     260 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.49
      TPR_14  13 alGdpdeAiallrralalaPdd 34 
                  + + d+A+ +++  ++++Pd+
  CTQ27133.1 155 DASRQDDAMVAFQNFVKKYPDS 176
                 4567788888899988888886 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0026
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPddaea 37 
                 p+a + l+++ ++ G+ d+A+ ++  +++ +P+++ a
  CTQ27133.1 180 PNANYWLGQLNYNKGRKDDAAFYFASVVKNYPKSPKA 216
                 689999**************************99876 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.022
      TPR_14  11 llalGdpdeAiallrralalaPddaeaw 38 
                 +   Gd+++A a++++++ ++P+ + a 
  CTQ27133.1 227 MQDKGDTAKAKAVYQQVINKFPGTDGAK 254
                 55679*****************887665 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3       6.9   5.2e+03      47      67 ..      55      76 ..      53      86 .. 0.60
   2 !   15.9   0.1   1.8e-05     0.014       8      60 ..     160     215 ..     142     223 .. 0.74
   3 ?    5.3   0.0     0.037        28      22      57 ..     214     249 ..     212     260 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 6.9
      TPR_19 47 lLdalpeedpdd.aryasLlAk 67
                lL +l+++  d+  ++ sL+++
  CTQ27133.1 55 LLTQLQQQLSDNqTDIDSLRGQ 76
                5555555555544555555555 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.8e-05
      TPR_19   8 aeAlalleqalqedpk...naearllLAeallalgqldeAealLdalpeedpddar 60 
                 ++A+ ++++  +++p+   +++a ++L ++ ++ g+ d+A    + + + +p+++ 
  CTQ27133.1 160 DDAMVAFQNFVKKYPDstyQPNANYWLGQLNYNKGRKDDAAFYFASVVKNYPKSPK 215
                 4444444444466999999*****************************99999765 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.037
      TPR_19  22 pknaearllLAeallalgqldeAealLdalpeedpd 57 
                 pk ++a      ++   g++++A+a+ +++ +++p 
  CTQ27133.1 214 PKAPDAMFKVGVIMQDKGDTAKAKAVYQQVINKFPG 249
                 555666666666666777888888888887777776 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.4    0.0012      0.92       2      32 ..     166     199 ..     165     201 .. 0.94
   2 ?    6.8   0.0     0.013       9.7       9      33 ..     213     237 ..     203     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0012
      TPR_17   2 ylkaleldPnn...adaynnLAelllknGdlmtA 32 
                 ++++++++P++   ++a + L++l +++G++++A
  CTQ27133.1 166 FQNFVKKYPDStyqPNANYWLGQLNYNKGRKDDA 199
                 89999*************************9998 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.013
      TPR_17   9 dPnnadaynnLAelllknGdlmtAr 33 
                  P+ +da++  ++++  +Gd+++A+
  CTQ27133.1 213 SPKAPDAMFKVGVIMQDKGDTAKAK 237
                 3555*******************98 PP

>> DUF4810  Domain of unknown function (DUF4810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.4       3.5   2.6e+03      15      37 ..      59      81 ..      44      94 .. 0.60
   2 ?    2.0   0.0      0.41     3e+02      55      79 ..     153     177 ..     146     179 .. 0.84
   3 !    7.4   0.0    0.0087       6.5      50      79 ..     185     214 ..     175     220 .. 0.87
   4 ?    5.5   0.0     0.032        24      47      76 ..     219     248 ..     214     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.5
     DUF4810 15 ykedeeskekqieklekiiekae 37
                ++++ +++++ i++l+ +i++ +
  CTQ27133.1 59 LQQQLSDNQTDIDSLRGQIQENQ 81
                44445555556666665555544 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.41
     DUF4810  55 ylkegkkeeaieafekEkelfPESa 79 
                 + ++ ++++a+ af++  +++P S+
  CTQ27133.1 153 VKDASRQDDAMVAFQNFVKKYPDST 177
                 556778999*************997 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0087
     DUF4810  50 elGllylkegkkeeaieafekEkelfPESa 79 
                  lG l +++g+k++a  +f +  +++P S 
  CTQ27133.1 185 WLGQLNYNKGRKDDAAFYFASVVKNYPKSP 214
                 5899***********************985 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.032
     DUF4810  47 lyAelGllylkegkkeeaieafekEkelfP 76 
                  + ++G+++ ++g++++a++ +++  ++fP
  CTQ27133.1 219 AMFKVGVIMQDKGDTAKAKAVYQQVINKFP 248
                 56679*******************999999 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.4      0.54     4e+02      38      74 ..      47      82 ..      37      95 .. 0.54
   2 !   13.9   0.3   4.4e-05     0.033      41     106 ..     144     210 ..     136     217 .. 0.82
   3 !    7.9   0.3    0.0031       2.3     154     191 ..     225     263 ..     221     264 .] 0.82

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.54
      TPR_21 38 eAsalYqqlqeaveakdaakakeaaeeladeyggtaY 74
                + s++ +ql+++++++ ++  ++ +++l  + ++++Y
  CTQ27133.1 47 RISNAHSQLLTQLQQQLSD-NQTDIDSLRGQIQENQY 82
                4444555555544433333.23334444444444444 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 4.4e-05
      TPR_21  41 alYqqlqeave.akdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvleka 106
                 + Y++  + v+ a+ +++a+ a+++++++y++++Y+  a+  l + ++++g  ++A+  + +v+++ 
  CTQ27133.1 144 TDYNAAIALVKdASRQDDAMVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGRKDDAAFYFASVVKNY 210
                 556555554442455557899************************************9999999886 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0031
      TPR_21 154 DilvaqgkldeAraaYqaAlaaleeka.rellqlKlddL 191
                  i+  +g++++A+a Yq+ +++   ++  +  q +l++L
  CTQ27133.1 225 VIMQDKGDTAKAKAVYQQVINKFPGTDgAKQAQKRLNAL 263
                 578889999999999999999999888877777777777 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.9   6.4e-06    0.0048     181     245 ..      40     100 ..      34     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 6.4e-06
        Spc7 181 eeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkse 245
                 +++++l++    +++  ++ L +l+++l++++++i++++ +++e q ql+++ e+ +++  q+++
  CTQ27133.1  40 DRVTQLER----ISNAHSQLLTQLQQQLSDNQTDIDSLRGQIQENQYQLNQIVERQKQILLQIDS 100
                 45555555....77788999********************************9999988777665 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   3.0   1.4e-05     0.011      83     148 ..      38     103 ..      35     106 .. 0.96

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.4e-05
     DUF3552  83 lekRllqkeetLdrkeeslekkeesleekekelkqkeqsleekeeeleelveeqrqeLerisgLtk 148
                 +e+R+ q e   +  ++ l + +++l++++ ++++ + +++e++ +l+++ve+q+q L +i  L++
  CTQ27133.1  38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQTDIDSLRGQIQENQYQLNQIVERQKQILLQIDSLSS 103
                 799**********************************************************99986 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   2.7   3.1e-05     0.023       2      67 ..      41     106 ..      40     164 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.1e-05
       HrpB7   2 rasawrtlverrarreerlraeleaaraalaaaeaalaaaqaqveaardavraheerlddlttgss 67 
                 r++ +++++++  +   +l+ +l++ +++ +++  ++++ q q+++  ++ +++  ++d+l +g+ 
  CTQ27133.1  41 RVTQLERISNAHSQLLTQLQQQLSDNQTDIDSLRGQIQENQYQLNQIVERQKQILLQIDSLSSGGG 106
                 78999********************************************************99874 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   0.00013     0.097      14      57 ..     171     215 ..     143     220 .. 0.80
   2 ?    2.9   0.0      0.17   1.3e+02       3      50 ..     194     245 ..     192     252 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00013
                 HHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HH CS
      ANAPC3  14 rllaaetespedayllAlclylngqykrAyellrka.klnskslg 57 
                 + +  +t+ p++ y+l++  y+ g+ + A  ++ +  k ++ks++
  CTQ27133.1 171 KKYPDSTYQPNANYWLGQLNYNKGRKDDAAFYFASVvKNYPKSPK 215
                 334699********************9999999998899888876 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
                 T-HHHHHHHHHHHH....HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.S CS
      ANAPC3   3 nnyknAiflaerlla...aetespedayllAlclylngqykrAyellrka.k 50 
                 ++ ++A f++  +++   ++++ p++ +  +  +   g+  +A  ++++  +
  CTQ27133.1 194 GRKDDAAFYFASVVKnypKSPKAPDAMFKVGVIMQDKGDTAKAKAVYQQViN 245
                 666899999999996555888889999999*************999999855 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  13.3    0.0012      0.88      81     150 ..      43     112 ..      39     124 .. 0.90
   2 ?    4.3   0.0     0.033        25      20      53 ..     144     177 ..     134     184 .. 0.90
   3 ?    2.2   0.1      0.15   1.1e+02      33      63 ..     231     263 ..     226     264 .] 0.76

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0012
  MscS_porin  81 eeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLnstaaagealsqaq 150
                 ++Le+  ++ s+ l +lq+ql++ ++++ +l+ ++++ q ql +  +r+++i  +++s++ +g a s aq
  CTQ27133.1  43 TQLERISNAHSQLLTQLQQQLSDNQTDIDSLRGQIQENQYQLNQIVERQKQILLQIDSLSSGGGAASGAQ 112
                 79999999999*****************************************999999887777777766 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.033
  MscS_porin  20 qdLeqalnlLdkidkskkkaeelqkaiddaPkel 53 
                 +d+++a++l +++ ++++ + ++q  ++++P  +
  CTQ27133.1 144 TDYNAAIALVKDASRQDDAMVAFQNFVKKYPDST 177
                 79*****************************877 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.15
  MscS_porin  33 dkskkkaeelqkaiddaPke..lrelqqeleal 63 
                  + +k  + +q++i+++P +   +++q++l+al
  CTQ27133.1 231 GDTAKAKAVYQQVINKFPGTdgAKQAQKRLNAL 263
                 555666778*********754488999999887 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.8   8.8e-05     0.066      69     111 ..      54      96 ..      50     103 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.8e-05
        COG2  69 eeleevesplaaarkkvesvreklsereeeveskleeakelee 111
                 + l +++++l+  +++++s+r +++e+++++++ +e +k++  
  CTQ27133.1  54 QLLTQLQQQLSDNQTDIDSLRGQIQENQYQLNQIVERQKQILL 96 
                 56899*******************************9998865 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2    0.0029       2.2       3      33 ..     182     212 ..     180     213 .. 0.87
   2 ?    2.5   0.0      0.19   1.4e+02      12      28 ..     228     244 ..     217     249 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0029
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                 a y lG++ +++g+ d+A  y+  +++ +P+
  CTQ27133.1 182 ANYWLGQLNYNKGRKDDAAFYFASVVKNYPK 212
                 6699*****************9888887775 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.19
                 HHTT-HHHHHHHHHHHH CS
       TPR_1  12 fklgkydeAleyyekAL 28 
                 + +g+  +A + y++++
  CTQ27133.1 228 QDKGDTAKAKAVYQQVI 244
                 679************98 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.7   0.00022      0.16     267     323 ..      44     100 ..      35     105 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00022
       IFT57 267 ylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemee 323
                 +l++  +   q + ++q++ls+ + +++ l ++++e + +l++i e+ +++  ++++
  CTQ27133.1  44 QLERISNAHSQLLTQLQQQLSDNQTDIDSLRGQIQENQYQLNQIVERQKQILLQIDS 100
                 444445556667889999999999999999999999999999999999999888876 PP

>> nos_propeller  Nitrous oxide reductase propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00086      0.64       3      32 ..     218     247 ..     216     252 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00086
  nos_propeller   3 dvhYniGHlsaaegdtkepdGkylvalnKl 32 
                    d ++++G ++  +gdt++++  y  ++nK+
     CTQ27133.1 218 DAMFKVGVIMQDKGDTAKAKAVYQQVINKF 247
                    57899************************8 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.28   2.1e+02      13      26 ..     142     155 ..     140     156 .. 0.79
   2 ?    7.1   0.8    0.0058       4.3      28      42 .]     180     194 ..     177     194 .. 0.94
   3 ?    1.3   0.0      0.37   2.8e+02      24      42 .]     213     231 ..     212     231 .. 0.91
   4 ?    2.8   0.1      0.12        92       6      22 ..     229     245 ..     224     248 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.28
      TPR_11  13 AieaYkkAlkldPd 26 
                 A ++Y++A++l  d
  CTQ27133.1 142 ANTDYNAAIALVKD 155
                 5589*****99765 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0058
      TPR_11  28 aeayynLGlayykqG 42 
                 ++a y+LG++ y++G
  CTQ27133.1 180 PNANYWLGQLNYNKG 194
                 9***********998 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.37
      TPR_11  24 dPdnaeayynLGlayykqG 42 
                 +P+ ++a ++ G++++ +G
  CTQ27133.1 213 SPKAPDAMFKVGVIMQDKG 231
                 699**********999887 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.12
      TPR_11   6 eqGkyeeAieaYkkAlk 22 
                 ++G+  +A ++Y++ ++
  CTQ27133.1 229 DKGDTAKAKAVYQQVIN 245
                 799***********996 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.5    0.0016       1.2     212     274 ..      45     103 ..      37     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0016
    Prominin 212 sddLddagkhlgldladtlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrd 274
                 ++ +++a+++l ++l+++l++n     +++++l  +++e + qL+q+ + +k++  + + L++
  CTQ27133.1  45 LERISNAHSQLLTQLQQQLSDN----QTDIDSLRGQIQENQYQLNQIVERQKQILLQIDSLSS 103
                 46899****************9....799***********************99988888876 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2  10.5    0.0025       1.9       2      54 ..      39      91 ..      38      95 .. 0.89
   2 ?   -0.2   1.0       2.1   1.6e+03      21      33 ..      83      95 ..      78     102 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0025
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXX CS
        SlyX  2 eerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleess 54
                e+r+++LE     + +++ +L++++ + q +id l+ q+++ + +l+++ e++
  CTQ27133.1 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQTDIDSLRGQIQENQYQLNQIVERQ 91
                89******999999*************************99998887776665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 2.1
                HHHHHHHHHHHHH CS
        SlyX 21 eLndvvaeqqqqi 33
                +Ln++v +q q +
  CTQ27133.1 83 QLNQIVERQKQIL 95
                7999888888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1897  (0.105806); expected 358.6 (0.02)
Passed bias filter:                     1093  (0.0609627); expected 358.6 (0.02)
Passed Vit filter:                       200  (0.0111551); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 1777.29
//
Query:       CTQ27134.1  [L=58]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.1   0.0       0.17   11.9   0.0    1.0  1  DUF3915   Protein of unknown function (DUF3915)


Domain annotation for each model (and alignments):
>> DUF3915  Protein of unknown function (DUF3915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.3e-06      0.17      81     119 ..       7      46 ..       2      49 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.3e-06
     DUF3915  81 ngvalfsalnnkddkdnkddknnqnatkftg.llrvcped 119
                 n v +f  ln+  d + k   n   +t f g +lr+cp+d
  CTQ27134.1   7 NTVMVFYMLNKIADYELKVVMNFVHQTLFPGtVLRICPND 46 
                 8899*************************98689****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 464.64
//
Query:       CTQ27135.1  [L=348]
Description: quinolinate synthetase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-103  345.7   0.0   2.3e-103  345.5   0.0    1.0  1  NadA      Quinolinate synthetase A protein


Domain annotation for each model (and alignments):
>> NadA  Quinolinate synthetase A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.5   0.0  1.3e-107  2.3e-103       1     299 []      32     341 ..      32     341 .. 0.95

  Alignments for each domain:
  == domain 1  score: 345.5 bits;  conditional E-value: 1.3e-107
                 HHHHHHHHHHTEEEEEETTS-HHHHHH-S....EEE-HHHHHHHCCC-SSSEEEEES-HHHHHHHHHHSTTSEEE-SSTT---HHHCT--HHHHHHHHH CS
        NadA   1 eeikelkkeknavilaHnYqedeiqeiad....fvGDSleLarkaaeteaevivfcGVhFMaetakiLspekkvllpdleagCsladmitaeeveelke 95 
                 e+ik+l +e++av++aH+Y+++eiq++a+    +++DSle+ar+ a+++a++++++GV+FM+etakiLspek++l+p+l+a+Csl+  ++ ee++++++
  CTQ27135.1  32 EKIKRLLRERDAVMVAHYYTDPEIQQLAEetggCIADSLEMARFGARHSASTLLVAGVRFMGETAKILSPEKTILMPTLNAECSLDLGCPIEEFNAFCD 130
                 58***************************9999999*************************************************************** PP

                 HSTTS-EEEESSS-HHHHTT-SEEE-TTTHHHHHHHSS..-SEEEEES-HHHHHHHHHHH.SEEEEESSSS-GCGGG--CHHHHHHHHCSTT-EEEE-T CS
        NadA  96 elpdaavvtYvNssaevKalsdivcTSsnavkvvealk..ekkilflPDqnLgryvakklgekkiilwkgaCsvHeefkaeeveelkeehpdakvlvHP 192
                 ++pd++vv+Y N+sa+vKa +d+v+TSs av+++++l+  ++kil++PD++Lgryv++++g+ ++++w+gaC+vH+efk++++ ++k+ hp+a+vlvHP
  CTQ27135.1 131 AHPDRTVVVYANTSAAVKARADWVVTSSIAVELIDHLDslGQKILWAPDRHLGRYVQRQTGA-DVLCWQGACIVHDEFKTQALMRMKALHPEAAVLVHP 228
                 *************************************779********************98.6*********************************** PP

                 TS-HHHHHCSSEE--HHHHCCCCGTTSSSCEEEES-THHHHHHHHH-TTSEEE........ECS.SSS.STTGGG--HHHHHHHHHHT-S..B----HH CS
        NadA 193 EckeevveaadvvgSTsqiikavkeseakefiigTelglverlkkeapekefials...aeaae.eav.CetMkkitleklleaLeelee.eeikvdee 285
                 E+++++ve+ad+vgSTsq+i a+k+ +++++i++T+ g+++++++++pek+++++    + a++ +++ C++M+++ l+ ++e Le+  + +ei+vde+
  CTQ27135.1 229 ESPQAIVEMADAVGSTSQLIAAAKSLPQRQLIVATDRGIFYKMQQAVPEKTLLEAPtagEGATCrSCAhCPWMAMNGLKAIAEGLEQGGAeHEIHVDEA 327
                 *****************************************************9887653444443335*****************9877467****** PP

                 HHHHHHHHHHHHHH CS
        NadA 286 vaekAkkalermle 299
                 +++ A  +l+rml+
  CTQ27135.1 328 LRTGALIPLNRMLD 341
                 ************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2621.45
//
Query:       CTQ27136.1  [L=239]
Description: nicotinamide mononucleotide transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-52  178.2  25.1    1.8e-52  177.9  25.1    1.1  1  NMN_transporter  Nicotinamide mononucleotide transporter
  ------ inclusion threshold ------
       0.28   11.0   9.3        1.8    8.5   0.1    3.3  3  LapA_dom         Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> NMN_transporter  Nicotinamide mononucleotide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.9  25.1     2e-56   1.8e-52       1     175 [.      23     226 ..      23     227 .. 0.95

  Alignments for each domain:
  == domain 1  score: 177.9 bits;  conditional E-value: 2e-56
  NMN_transporter   1 slleligallgllsvllaarrniwnwpvgiisvllyivvffqaglygdallqlfyivmsiyGwirWsknkkk.....avrkltkkewlilllvi 89 
                      s++e++g+++gll+++la+ ++i n+ +g+++v+l++++ffq++ly+++llqlf++++++yGw++Ws++ ++     ++r+l++++ l +l+++
       CTQ27136.1  23 SWIEAVGTIAGLLCIWLASLEKISNYAFGLVNVTLFAIIFFQIQLYASLLLQLFFFAANVYGWYAWSRQSSNheaelQIRWLPRSKALGWLAAC 116
                      7*******************************************************************99989886559*************** PP

  NMN_transporter  90 vlgtallgfllkal........................tdaalpvlDafttvlsivaqllmarryvenWllWivvdvvsvvlyllkglyvtail 159
                      v+++ ll+++++ +                        +++a+p++D+++tvls+va++lm+r+yvenWllW++v+v+svv+++ +g+y++++ 
       CTQ27136.1 117 VVAIGLLTLFINPFfafltriavslmqalglqvtmpelQPDAFPFWDSCMTVLSVVAMILMTRKYVENWLLWVIVNVISVVIFARQGVYAMSLE 210
                      *****9999999966777888888888889999999889999**************************************************** PP

  NMN_transporter 160 yvvylvlavyglleWr 175
                      y++++++a++g + W 
       CTQ27136.1 211 YLLLTFIALNGSRMWI 226
                      ***************7 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0002       1.8       3      39 ..       6      42 ..       6      48 .. 0.92
   2 ?    7.4   0.3   0.00042       3.7       6      37 ..      53      87 ..      51     108 .. 0.84
   3 ?   -2.4   0.7      0.47   4.2e+03      20      32 ..     111     123 ..     109     136 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0002
    LapA_dom  3 tqpVtvnflfaqvelpLsllllvafgiGallgwllsl 39
                tq + v++ ++ + + Ls + +v  ++G+l +wl+sl
  CTQ27136.1  6 TQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIWLASL 42
                6889999999999**********************98 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00042
    LapA_dom  6 Vtvnfl...faqvelpLsllllvafgiGallgwll 37
                V+v ++   f+q++l  slll ++f++  + gw +
  CTQ27136.1 53 VNVTLFaiiFFQIQLYASLLLQLFFFAANVYGWYA 87
                777777778******************99999975 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.47
    LapA_dom  20 sllllvafgiGal 32 
                 + l + +++iG+l
  CTQ27136.1 111 GWLAACVVAIGLL 123
                 4444445555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       974  (0.0543254); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1791.32
//
Query:       CTQ27137.1  [L=314]
Description: zinc efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-51  172.7  14.5    8.8e-51  172.5  14.5    1.1  1  Cation_efflux  Cation efflux family
     0.0011   17.7   0.3     0.0011   17.7   0.3    2.1  2  OPT            OPT oligopeptide transporter protein
  ------ inclusion threshold ------
      0.095   13.0   8.2       0.04   14.3   4.9    1.8  2  Vut_1          Putative vitamin uptake transporter
       0.36   10.5   1.4        1.6    8.4   1.2    2.0  2  DUF1673        Protein of unknown function (DUF1673)


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.5  14.5     2e-54   8.8e-51       2     199 .]      22     213 ..      21     213 .. 0.96

  Alignments for each domain:
  == domain 1  score: 172.5 bits;  conditional E-value: 2e-54
  Cation_efflux   2 ilsllanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygrlevlgalvsgllllglavfllleaiqklikeg 97 
                    + +++++++++l+e ++g++++Slallada h+l+d ++ll++lla++++++pp++r++fG+ rl +l+a+ +++ l+++ + +++eaiq++   +
     CTQ27137.1  22 LWAFIVTAGFMLIEAVGGAISGSLALLADAGHMLTDSAALLFALLAVRFASRPPNARHTFGWLRLTTLAAFLNAIALVVITMLIVWEAIQRFQ--H 115
                    56889999*************************************************************************************..8 PP

  Cation_efflux  98 ereihaglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvaslligliilysalkllke 193
                    ++ +    ++v+a+++l+ n++ ++il+r+  + r+ +++aaalhvlgD+l+s+g++v+a+vil++     + +Dp++s+l+++++l sa++llke
     CTQ27137.1 116 PQPVAGVTMMVIAVAGLLANVLAFWILHRG-SEERNLNVRAAALHVLGDLLGSVGAIVAAVVILTTGW---TPVDPILSVLVSCLVLRSAWRLLKE 207
                    89999999*******************997.689*******************************955...56*********************** PP

  Cation_efflux 194 slseLl 199
                    sl eLl
     CTQ27137.1 208 SLNELL 213
                    ***997 PP

>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   4.1       0.1   4.6e+02     524     567 ..      95     139 ..      24     158 .. 0.66
   2 !   17.7   0.3   2.5e-07    0.0011       8      59 ..     160     210 ..     150     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.1
         OPT 524 afllgavapfilllllkkfpkkstarkl.plplafavgfylppsl 567
                 a++l+++ ++i++ ++++f +   ++ +   ++a+a+++ +++++
  CTQ27137.1  95 AIALVVITMLIVWEAIQRFQHPQPVAGVtMMVIAVAGLLANVLAF 139
                 222334555666666666554444444445555555555555555 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 2.5e-07
         OPT   8 vlGillgvlgsavnmyfglrtglvsissipaallafplgkalarilpklsln 59 
                 vlG llg +g++v++ ++l+tg++++ +i + l+++ +++   r+l++ sln
  CTQ27137.1 160 VLGDLLGSVGAIVAAVVILTTGWTPVDPILSVLVSCLVLRSAWRLLKE-SLN 210
                 7999************************************65577766.454 PP

>> Vut_1  Putative vitamin uptake transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.43   1.9e+03      25      42 ..      17      34 ..      11      69 .. 0.77
   2 ?   14.3   4.9   8.8e-06      0.04      28     139 ..      85     202 ..      83     208 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.43
       Vut_1 25 aarkvvllgflanllali 42
                +ar++ ++ ++++ ++li
  CTQ27137.1 17 NARRLLWAFIVTAGFMLI 34
                678888888877777765 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 8.8e-06
       Vut_1  28 kvvllgflanllalillllalllpaealesvfgltprivlasliaylvsqlldvyvfhrlkkltkgkklwlrnigStlvsqlvdtlifvtiaflg.... 122
                 ++  l++++n++al+++++ ++++a  ++ + +++p   +  ++  +++ l +v +f  l++ +++++l +r+++  +++ l+ ++  ++ a ++    
  CTQ27137.1  85 RLTTLAAFLNAIALVVITMLIVWEA--IQRFQHPQPVAGVTMMVIAVAGLLANVLAFWILHRGSEERNLNVRAAALHVLGDLLGSVGAIVAAVVIlttg 181
                 5678999999999999999999998..999999***************************99999999****************999999997557888 PP

       Vut_1 123 ....eqlleiilsqyliklli 139
                     + +l++ +s +++  ++
  CTQ27137.1 182 wtpvDPILSVLVSCLVLRSAW 202
                 888877777777777766555 PP

>> DUF1673  Protein of unknown function (DUF1673)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.2   0.00036       1.6     142     198 ..      76     136 ..      59     143 .. 0.82
   2 ?   -0.5   0.0      0.18   8.2e+02      65     107 ..     168     210 ..     149     245 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00036
     DUF1673 142 nenpvlrwllrllllviflliavllillsyvesiagelqlge....vvssfisgllllllw 198
                 n ++++ wl  + l+ ++ +ia+++i + +v++  + +q+ +    v+++ i+  +ll  +
  CTQ27137.1  76 NARHTFGWLRLTTLAAFLNAIALVVITMLIVWEAIQRFQHPQpvagVTMMVIAVAGLLANV 136
                 7789999*******************************99889999555555554444333 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.18
     DUF1673  65 fftllsllvltqlGinlialliglllsllliiltwkkqmqiyd 107
                 ++ +++ +v+   G + +  ++++l+s l++  +w+ + ++++
  CTQ27137.1 168 VGAIVAAVVILTTGWTPVDPILSVLVSCLVLRSAWRLLKESLN 210
                 4445555555567777777777777777777777664444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1075  (0.0599587); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2440.49
//
Query:       CTQ27138.1  [L=121]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-50  168.0  17.2      1e-49  167.8  17.2    1.0  1  YbgS      YbgS-like protein


Domain annotation for each model (and alignments):
>> YbgS  YbgS-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.8  17.2   5.7e-54     1e-49       1     120 []       3     121 .]       3     121 .] 0.96

  Alignments for each domain:
  == domain 1  score: 167.8 bits;  conditional E-value: 5.7e-54
        YbgS   1 mkklailfltaaltlgsGaalaads....nnGqansaadaGavagdakqnvaPnkvdnskinngstntnstatksttdsdklskdevhkntmCkdGkCP 95 
                 mkkl++l+lta+l+l+sGaalaad+    nnGqans+adaG+va+da++nvaPn+vdns+in+gs+ t+++    t+++d++s+devhkn+mCkdG+CP
  CTQ27138.1   3 MKKLTTLLLTATLGLASGAALAADTgaqsNNGQANSSADAGQVAPDARENVAPNNVDNSQINSGSGGTTGS----TMTQDNMSSDEVHKNSMCKDGRCP 97 
                 9**********************999999***********************************9666665....899********************* PP

        YbgS  96 dinkkvetgeGvgsdvntktdGttq 120
                 d++kk+++g G+++++n+ktdGttq
  CTQ27138.1  98 DTGKKLDNG-GNTTQDNSKTDGTTQ 121
                 ******999.99************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 955.22
//
Query:       CTQ27139.1  [L=350]
Description: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.3e-111  371.1   0.0   2.7e-111  370.8   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.8   0.0  1.5e-115  2.7e-111       8     274 ..      38     338 ..      25     339 .. 0.97

  Alignments for each domain:
  == domain 1  score: 370.8 bits;  conditional E-value: 1.5e-115
                   H.....HHCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S.SSTTS-SHTTHHHTHHHHHHHHHHH.......... CS
  DAHP_synth_1   8 a.....adiliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKpRrstvgfkGlindpdlkilsrikkel.......... 89 
                   +     ++il+G+ddrllv++GPCsi+dp aa+eyA+rl  l+e lk +lei+mr+yfeKp r+tvg+kGlindp++++++ri+++l          
    CTQ27139.1  38 HarkaiHQILKGDDDRLLVVIGPCSIHDPAAAKEYAARLLTLREALKGELEIVMRVYFEKP-RTTVGWKGLINDPHMDNSFRINDGLriarkllldi 133
                   04456699*****************************************************.9********************************** PP

                   ...T-EEEEEESSCCTHHHHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TT....HHHHHHHHHHHHHHHTTE.........EE--EEEEE CS
  DAHP_synth_1  90 ...glpiatevldpisvqyladvvdiiqiGArttesqdllelasglskpvglKngtd....vaidemkaaaekilflgv.........etkgiilce 170
                      glp+a+e+ld+i++qy+ad++++++iGArttesq+++elasgls+pvg+Kngtd    vaid+++aa ++++fl+v         +t+g+ +c+
    CTQ27139.1 134 ndsGLPAAGEFLDMITPQYVADLMSWGAIGARTTESQVHRELASGLSCPVGFKNGTDgtikVAIDAINAAGAPHCFLSVtkwghsaivNTSGNGDCH 230
                   ************************************************************************************************* PP

                   EEEEESTSSSSSCHCHHHHHHHHHHCTSS.-EEEESCHHHTTCGGGGHHHHHHHHHHHHHTT...ESEEEEEBBSSCCC-SSTGGGGBBCTCBHHHH CS
  DAHP_synth_1 171 rglrggkktnrdvedvaavkilkeetgkl.pvmvDvsHansrkdykrqkkvlklakaaiaaG...iaGvmiEshlnpgkalsdgkqalkygksetda 263
                   ++lrggk++n+++++va+vki + ++g + +vm+D+sHans+k++k+q++v ++++++ia G   i GvmiEshl +g+++++++++l+ygks+tda
    CTQ27139.1 231 IILRGGKEPNYSAKHVAEVKIGLAKAGLPaQVMIDFSHANSSKQFKKQMEVGADVCQQIAGGeraIMGVMIESHLVEGNQSLESGEPLTYGKSVTDA 327
                   **************************8779******************************************************************* PP

                   HHHHHHHHHHH CS
  DAHP_synth_1 264 cilkeltelll 274
                   ci++e+te +l
    CTQ27139.1 328 CIGWEDTETIL 338
                   *******9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2614.55
//
Query:       CTQ27140.1  [L=250]
Description: phosphoglyceromutase 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-37  128.4   0.0    5.8e-34  117.5   0.0    2.0  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   0.0   3.2e-38   5.8e-34       1     184 [.       6     221 ..       6     229 .. 0.89

  Alignments for each domain:
  == domain 1  score: 117.5 bits;  conditional E-value: 3.2e-38
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EE..EE-SSHHHHHHHHHHHHCTT...--EEE-GGGS----GGGTT-B.HHHH CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidai..ysSplkRarqTaeliaealg...lpveldegLrEidfGdweglttaeia 94 
                 l+LvRHGe++wn e+r+ g+ dv+L+e+G+ +A+a+++ l++e+++++  y+S lkRa++T   ++++l+   lpve+  +L+E+++G+++gl++ae a
  CTQ27140.1   6 LVLVRHGESQWNNENRFTGWYDVDLSEKGVSEAKAAGKLLKAEGFSFDfaYTSVLKRAIHTLWNVLDELDqawLPVEKSWKLNERHYGALQGLNKAETA 104
                 79****************************************77777777************************************************* PP

                 HH..HSHHHHHHHHH-GGG-B.........................S-BHHHHHHHHHHHHH..HHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGG CS
  His_Phos_1  95 eeypeeleawlrdpadvrppg.........................gEsledvaaRvaaale..elaarhegetvlvVsHggvirallarllglpleel 166
                 e+y +e  +++r+   v+pp+                          Esl+   +Rv++ ++   l +  +ge+v++ +Hg  +ral+++l ++  +e+
  CTQ27140.1 105 EKYGDEQVKQWRRGFAVTPPEltkdderypghdpryakltdaelptTESLALTIDRVVPYWNetILPRLKSGERVIIAAHGNSLRALVKYLDNMGEDEI 203
                 ***********999999999999997888888888888888888888888888888888887533556777777************************* PP

                 GGB---TT-EEEEEE-SS CS
  His_Phos_1 167 rrleldnaslsvlefdeg 184
                  +l++++    v efde+
  CTQ27140.1 204 LELNIPTGVPLVYEFDEN 221
                 *99999888777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1960.53
//
Query:       CTQ27141.1  [L=347]
Description: galactose-1-epimerase (mutarotase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-88  297.1   0.0    1.5e-88  297.0   0.0    1.0  1  Aldose_epim  Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.0   0.0   8.5e-93   1.5e-88       2     300 ..      17     342 ..      16     343 .. 0.99

  Alignments for each domain:
  == domain 1  score: 297.0 bits;  conditional E-value: 8.5e-93
                  EEEEEETTEEEEEECTCTTEEEEEEETT.S..TEESB-B-STHHHHHHSC.CSSCEECSS-SEEETTEEEETTEEEECCCCBTTTCEETBSGGG...S CS
  Aldose_epim   2 litlkngaglsakislyGAtllslkvpdke..qrevllgsddaeeylkds.yfgatlgrvanRianGeFeldGkpyqlpqneegknplHGgarg...r 93 
                  ++tl+n+ g++++++++GAtlls +vp ++  +r  llg+ ++e+y +++ ++ga +gr+anRi+  +F+ldG+ +++++ ++  ++lHGg  g   r
   CTQ27141.1  17 QVTLRNKSGMTVTVADWGATLLSAEVPLADgsLRRPLLGCAKLEDYARQAaFLGASVGRYANRIGHSRFSLDGQVVNVTPSNDAGHQLHGGPEGfdkR 114
                  79**************************99**99**************************************************************** PP

                  B-EEEEEEETTEEEEEEEEEEETCHCSTSEEEEEEEEEEETTEEEEEEEEEEESSS-EEEEEEEEEEEETSSC..TCTGGEEEEEEEEEEEECTTSGE CS
  Aldose_epim  94 eWeveevkeddgvtvslvlkpdgeegypgdlevrvtytLnednelkieyeatndgkptpfnltnHtYFnlsge..sidshelqieadeylevdeelip 189
                  +W++++  e ++v + l++ pdg++g+pg+l+++ +y+L++dn++ i+y+at d +p+p+n+tnH YFnl ge  ++++h+lqi a +yl+v++++ip
   CTQ27141.1 115 RWRIVRADE-QEVLFALTS-PDGDQGFPGTLQATAHYRLSDDNRIAITYRATVD-QPCPVNMTNHVYFNLDGEqgDVRQHQLQILAQRYLPVESDGIP 209
                  ******996.*********.**********************************.8****************************************** PP

                  EEEEEECTTCCCCCCSSEEHCSSET.........EEEEEEEESSC...SEEEEEETTTTEEEEEEEETTSSEEEEEECTTTT........SEECCEEE CS
  Aldose_epim 190 tgelkdvkgtpfdfrqpkaigedlk.........glDhayllksk...lkaviidpdkksgiklevsttepalvvytgnflk........kylsregl 267
                   gelkdv +t+fdfrqpk+i  d+          g+Dha+ll+ k    ++++++++++ +++++v+t++pal++y+gn+l          y++++gl
   CTQ27141.1 210 GGELKDVANTSFDFRQPKTIAADFLadadqqkvkGYDHAFLLDAKgdaSQPAAQVWSQDGKLQMTVYTSAPALQFYSGNYLGgtpsqttePYADWQGL 307
                  ************************************************************************************************** PP

                  SSECTCETCCCECHHHT..-EEEHTTTEEEEEEEE CS
  Aldose_epim 268 aletqmlpdepnhpefp..sivlkpGesysaetsy 300
                  ale ++lpd+pnhp++p  ++vl+pG++y + t+y
   CTQ27141.1 308 ALESEFLPDSPNHPQWPqpDCVLRPGQEYVSLTEY 342
                  *****************************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2837.81
//
Query:       CTQ27142.1  [L=382]
Description: galactokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-22   77.8   0.1    6.3e-22   76.9   0.1    1.5  1  GalKase_gal_bdg  Galactokinase galactose-binding signature
    1.4e-14   54.2   0.1    3.6e-14   52.9   0.0    1.7  2  GHMP_kinases_C   GHMP kinases C terminal
    2.8e-14   53.1   0.3    5.2e-14   52.2   0.3    1.5  1  GHMP_kinases_N   GHMP kinases N terminal domain


Domain annotation for each model (and alignments):
>> GalKase_gal_bdg  Galactokinase galactose-binding signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.1   1.1e-25   6.3e-22       3      49 .]      11      58 ..       9      58 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 1.1e-25
                     HHHHHS--.-EEEEEEEEEEEE--S-TTTT-EEEEEEEEEEEEEEEEE CS
  GalKase_gal_bdg  3 FqktFgke.pfvasAPGRvnLiGEHtDYngGfVlpmAieqdiyiavsp 49
                     F+++Fg    +v++APGRvnLiGEHtDYn+GfVlp+Ai+++++i ++p
       CTQ27142.1 11 FADAFGYPaSHVIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAP 58
                     99*****966**********************************9875 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.5     9e+03      28      46 ..     165     183 ..     154     188 .. 0.65
   2 !   52.9   0.0     6e-18   3.6e-14       2      84 ..     279     361 ..     278     362 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.5
  GHMP_kinases_C  28 vvgilppeleellealsel 46 
                      vg+ + ++++l++al + 
      CTQ27142.1 165 FVGCNCGIMDQLISALGKK 183
                     4777777888888888444 PP

  == domain 2  score: 52.9 bits;  conditional E-value: 6e-18
  GHMP_kinases_C   2 lealergdlellgellnlsqrs.elkavvgilppeleelleal.selG.algaklsGaGgGptvfalfkdkdeaeqvaralreefe 84 
                     ++ale+gdl+++gel+ +s++s    + ++i  p +++l+e+   + G   g++++G G+G++v+al+  +d ++ v++a+++e+e
      CTQ27142.1 279 ASALEKGDLKRMGELMAESHASmR--DDFEITVPQIDTLVEIVkAAIGdKGGVRMTGGGFGGCVVALI-PEDLVDTVQQAVANEYE 361
                     689******************954..59***************66666********************.************99987 PP

>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.3   8.7e-18   5.2e-14       1      65 [.     114     181 ..     114     182 .. 0.91

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 8.7e-18
                     EEEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHH...HHHHHHHHHHHHHHHHHSHHHHHHHHS CS
  GHMP_kinases_N   1 divikseiPvgaGLGSSAAlavalvaAllallglslee...aklaleaerlaqggngsggDvaasvyG 65 
                     d+vi++++P gaGL+SSA+l va+ + + +l+ l+l+    a  ++eae++++g n++++D+  s++G
      CTQ27142.1 114 DLVISGNVPQGAGLSSSASLEVAVGTVFQQLYHLPLDGaqiALNGQEAENQFVGCNCGIMDQLISALG 181
                     689******************************99944355666*********************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2906.41
//
Query:       CTQ27143.1  [L=348]
Description: galactose-1-phosphate uridylyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-71  238.2   0.1    8.5e-71  237.1   0.1    1.5  2  GalP_UDP_tr_C    Galactose-1-phosphate uridyl transferase, C-
      1e-70  237.9   0.0    1.5e-70  237.4   0.0    1.2  1  GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-
    0.00016   22.4   0.0     0.0011   19.7   0.0    2.1  2  HIT              HIT domain
  ------ inclusion threshold ------
      0.041   12.7   0.7       0.16   10.7   0.1    1.9  2  DUF4921          Domain of unknown function (DUF4921)


Domain annotation for each model (and alignments):
>> GalP_UDP_tr_C  Galactose-1-phosphate uridyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.2   5.3e+03      91      99 ..     152     167 ..     108     179 .. 0.55
   2 !  237.1   0.1   1.9e-74   8.5e-71       2     165 ..     183     345 ..     182     347 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.2
                    T.......S---EEEE CS
  GalP_UDP_tr_C  91 e.......tsfeysmG 99 
                    e       +s +++ G
     CTQ27143.1 152 EnkgaamgCSNPHPHG 167
                    2444444477777777 PP

  == domain 2  score: 237.1 bits;  conditional E-value: 1.9e-74
                    HHHHHHHHHHH.SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---EE CS
  GalP_UDP_tr_C   2 ldsfekYfagsngsillhdyvqmelaekervvelkdsflavvpylakWPfevlllrkaevkslaeladeekedlaailkklarkydnlfetsfeys 97 
                    ++ +++Y a + g+++l dyvq+ela+ +r+v+ ++++lavvpy+a+WPfe+lll+ka+v+++++l+d++++dla +lkkl+++ydnlf++sf+ys
     CTQ27143.1 183 DRLQKAYYAAQ-GQPMLLDYVQRELADGSRTVVDTEHWLAVVPYWAAWPFETLLLPKAHVQRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYS 277
                    577999***99.************************************************************************************ PP

                    EEEE---SCCCTTTT-.-EEEEE--BCSSTTEB----THHHHT-EEESS-HHHHHHHHH.CS-SS-TTC CS
  GalP_UDP_tr_C  98 mGlhqaplnaeednsw.lHaHfevpllrsatvrkieVGlelLperlrdllaEqaaerlrnalsevHkea 165
                    mG+h+ap+n e++n+w lHaHf++pllrsatvrk++VG+e+L+e++rdl+aEqaaerlr a+s+vH+++
     CTQ27143.1 278 MGWHGAPFNDEDHNHWqLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAERLR-AVSDVHFRE 345
                    ***********************************************************.******986 PP

>> GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.4   0.0   3.3e-74   1.5e-70       4     184 .]       5     176 ..       2     176 .. 0.98

  Alignments for each domain:
  == domain 1  score: 237.4 bits;  conditional E-value: 3.3e-74
  GalP_UDP_transf   4 eeddaiyashrrfnpltgewvlvsphrtkrpwqgqqekiskdtlpekDklkcyLcPgnsrangefnpkykstfvftndFpalsedsnyikteai 97 
                      ++ d+   +hrr+npltg+w+lvsphr+krpwqg+qe+++k+tlp++D + c+LcPgn+r++g++np+y++t+vftndF+al++d+++  +   
       CTQ27143.1   5 NPVDH---PHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQTLPAHD-PDCFLCPGNTRVTGDTNPNYTGTYVFTNDFAALMTDTPDAPE--- 91 
                      56688...****************************************.****************************************99... PP

  GalP_UDP_transf  98 aknilfkaepayGrceviifsskheltladlspkdikavvaaWqektaelkakeypkcvlifENkGaamgvsnphPHgqiwaeehlp 184
                      ++++l++ ++a+G+ +vi+fs++h++tl++ls   +++vv++Wqe+ta+l++   + +v++fENkGaamg+snphPHgq+wa+++lp
       CTQ27143.1  92 SDDPLMRCQSARGTSRVICFSPDHSKTLPELSLVALEDVVKTWQEQTADLGK--SYPWVQVFENKGAAMGCSNPHPHGQVWANSFLP 176
                      899**********************************************999..9******************************98 PP

>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.45     2e+03      40      89 ..     119     166 ..     109     171 .. 0.77
   2 !   19.7   0.0   2.5e-07    0.0011       7      66 ..     211     270 ..     206     302 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.45
                 GGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-E CS
         HIT  40 lhdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlH 89 
                 l +l+  +l +++++ ++  ++l+k  +   ++v+ n+ga+ g s +h H
  CTQ27143.1 119 LPELSLVALEDVVKTWQEQTADLGK--SYPWVQVFENKGAAMGCSNPHPH 166
                 5555566677888888888888888..55689999999999999988877 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 2.5e-07
                 CEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCT CS
         HIT   7 tvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkf 66 
                 + v+++++ la++   + +p  +L++pk+h+++++dlt++ +++l  a kk+ +   + f
  CTQ27143.1 211 RTVVDTEHWLAVVPYWAAWPFETLLLPKAHVQRITDLTDAQRSDLALALKKLTSRYDNLF 270
                 67899**********************************************998776655 PP

>> DUF4921  Domain of unknown function (DUF4921)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   3.6e-05      0.16       7      57 ..      12      62 ..       8      99 .. 0.84
   2 ?   -0.2   0.0     0.078   3.5e+02     220     247 ..     144     171 ..     127     193 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.6e-05
     DUF4921  7 kqvnPftGtevWtvpgrgnrPlsekaeetapleeedreeacafcedrklet 57
                ++ nP+tG  +   p r++rP + ++e++a+ +  +++  c  c  ++  t
  CTQ27143.1 12 RRYNPLTGQWILVSPHRAKRPWQGAQETPAKQTLPAHDPDCFLCPGNTRVT 62
                578************************9999999999*******9887644 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.078
     DUF4921 220 yvrYvavfqnWLkpaGasfdhlhkqlva 247
                   ++v+vf n  +  G s  h h q+ a
  CTQ27143.1 144 SYPWVQVFENKGAAMGCSNPHPHGQVWA 171
                 4578999999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2730.01
//
Query:       CTQ27144.1  [L=338]
Description: UDP-galactose-4-epimerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-65  221.7   0.0    1.8e-65  221.5   0.0    1.0  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
      4e-61  206.6   0.0    4.8e-61  206.3   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.1e-20   73.8   0.0      9e-20   70.8   0.0    1.9  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    1.6e-18   66.9   0.0    1.5e-17   63.7   0.0    2.0  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    1.3e-14   54.0   0.0    2.4e-14   53.1   0.0    1.4  2  RmlD_sub_bind    RmlD substrate binding domain
      8e-12   45.2   0.0    4.9e-09   36.1   0.0    2.3  2  NmrA             NmrA-like family
    5.6e-11   42.7   0.0    1.3e-10   41.5   0.0    1.6  2  NAD_binding_10   NAD(P)H-binding
    5.3e-08   33.0   0.0    9.6e-08   32.1   0.0    1.4  1  KR               KR domain
    7.3e-08   32.1   0.1    1.6e-07   31.0   0.1    1.7  1  adh_short        short chain dehydrogenase
    6.6e-06   25.5   0.1    0.00026   20.2   0.1    2.5  1  NAD_binding_4    Male sterility protein
     0.0055   16.3   0.1     0.0089   15.6   0.1    1.3  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
  ------ inclusion threshold ------
      0.026   14.1   0.1      0.052   13.1   0.0    1.5  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
       0.13   12.7   0.1       0.39   11.2   0.1    1.7  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
       0.16   12.3   0.1       0.71   10.1   0.0    1.9  2  TrkA_N           TrkA-N domain


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.5   0.0   1.4e-68   1.8e-65       1     332 []       4     325 ..       4     325 .. 0.90

  Alignments for each domain:
  == domain 1  score: 221.5 bits;  conditional E-value: 1.4e-68
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-T..THHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTS CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfn..tgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfek 94 
                    L+TG++G+iGs+++ +Ll++g+ev++++++++s +  +  ie+l         ++ ++++gD+++++ ++++l+++ +++v+++A+ ++V++s+ k
     CTQ27144.1   4 LVTGGSGYIGSHTCVQLLQQGHEVVILDNLCNSKRsvLPVIERLG-------GKEATFIEGDIRNEALMTEILHDHAIEAVIHFAGLKAVGESVAK 92 
                    9****************************9888541134445544.......35689*************************************** PP

                    HHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS--.---SHHHHHHHHHHHHHHHHHHHH---.EEEEEE-E....EE CS
  GDP_Man_Dehyd  95 PeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpf.yPrsPYaaaKlyadwivvnyreayglf.avngilfn....he 184
                    P +++++nv+Gtl+L+ a+ra+g++    f+++S+++vYG++ ++p+ E+ p+ +P+sPY+ +Kl+ ++i ++ ++a+  + +   ++fn    h 
     CTQ27144.1  93 PLEYYDNNVTGTLKLVSAMRAAGVK---NFIFSSSATVYGDQPKIPYVESFPTgTPQSPYGKSKLMVEQILTDLQKAQPEWsIALLRYFNpvgaHP 185
                    ***********************96...7***********************957**********************9987255689********* PP

                    STTS-TT..SCCCHHHHHHHHHHTTS-C-EEC.TTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH.... CS
  GDP_Man_Dehyd 185 sprrget..fvtrkitravarialgkqevlyl.GnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkge 277
                    s  +ge+   + +++++++a++a+g++e l + Gn +++ d + v+Dy+++m+l            a+g++  +++++++a +++ +     g+++
     CTQ27144.1 186 SGDMGEDpqGIPNNLMPYIAQVAVGRRESLAIfGNDYPTEDGTGVRDYIHVMDL------------ADGHVAAMEKLADKAGVHIYNLGAGVGSSV 269
                    *****954499***************9988877********************8............789999999999999999999988899998 PP

                    ..........TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHHH CS
  GDP_Man_Dehyd 278 eevgra..kesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvrem 332
                     +v +a  k+ gk  ++++++++r+g+  ++++da+ka +eL+W+ + +++e+ +++
     CTQ27144.1 270 LDVVNAfsKACGK-PINYHFAPRRDGDLPAYWADAAKADRELNWRVTRNLDEMAQDT 325
                    8765543255555.79*************************************9875 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.3   0.0   3.8e-64   4.8e-61       1     241 []       3     262 ..       3     262 .. 0.95

  Alignments for each domain:
  == domain 1  score: 206.3 bits;  conditional E-value: 3.8e-64
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiekn 91 
                 +lVtG++G+iGs+++ +ll++g+ev+ ld+l +++++ +   +        +++e+d+++++ +++++++++++avih+A+ + v++s+ +p +++++n
  CTQ27144.1   3 VLVTGGSGYIGSHTCVQLLQQGHEVVILDNLCNSKRSVLPV-IerlggkeaTFIEGDIRNEALMTEILHDHAIEAVIHFAGLKAVGESVAKPLEYYDNN 100
                 79*****************************7777766544.3599***************************************************** PP

                 THHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHH.T-EEEEEEESEEESTT.......S-TTS CS
   Epimerase  92 lqgtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgpl.kpnspYaaaKlageklveayaaqy.glnaiilrlfnlyGpr.......ngege 181
                 + gtl+l++a+r+agvk+++f sS++vYG+++++p  e+    p+  p+spY+ +Kl++e++++++++++ ++++  lr+fn +G++       +++g 
  CTQ27144.1 101 VTGTLKLVSAMRAAGVKNFIFSSSATVYGDQPKIPYVESF---PTgTPQSPYGKSKLMVEQILTDLQKAQpEWSIALLRYFNPVGAHpsgdmgeDPQGI 196
                 ***********************************99999...999************************9*******************999777777 PP

                 TTSHHHHHHHHHHTTS.SSEEEET......TST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 182 vsrvipalirkilegk.qevtllg......dgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 +++++p +i++++ g+ +++ ++g      dgt +Rd+++v D+a+++++++e+ ++++  +iyn+G
  CTQ27144.1 197 PNNLMP-YIAQVAVGRrESLAIFGndypteDGTGVRDYIHVMDLADGHVAAMEKLADKAGVHIYNLG 262
                 999999.67777777779***************************************99999***98 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0     7e-23     9e-20       1     157 [.       4     160 ..       4     166 .. 0.88
   2 ?    0.7   0.0      0.17   2.1e+02     208     235 ..     226     253 ..     207     259 .. 0.86

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 7e-23
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD..lrespelleelskvnvkk..viegDvtdkdkleealeg..vdvvihlaslvdvag.kltedeimkvn 92 
                 +vtGg+G++G++ + +L++ +  +ev +lD   + + ++l  +++++ k+  +iegD+++++ ++e l++  +++vih a+l  v   + +  e+++ n
  CTQ27144.1   4 LVTGGSGYIGSHTCVQLLQQG--HEVVILDnlCNSKRSVLPVIERLGGKEatFIEGDIRNEALMTEILHDhaIEAVIHFAGLKAVGEsVAKPLEYYDNN 100
                 69*******************..5******8767777888888999888778****************9744688**********986788899***** PP

   3Beta_HSD  93 vkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklv 157
                 v GT ++++a + agv+ +++ Ssa v g+    ++ +   E+ +   ++q++y +sK + E+++
  CTQ27144.1 101 VTGTLKLVSAMRAAGVKNFIFSSSATVYGD----QPKIPYVESFPT-GTPQSPYGKSKLMVEQIL 160
                 ******************************....333334577765.579**********99975 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.17
   3Beta_HSD 208 deevlsdrvYvgNvawahilAaralqdp 235
                 d   + d++ v  +a+ h+ A+ +l d+
  CTQ27144.1 226 DGTGVRDYIHVMDLADGHVAAMEKLADK 253
                 56678899*****************987 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   1.2e-20   1.5e-17       1     173 [.       3     182 ..       3     186 .. 0.78

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 1.2e-20
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      vlvtG++G iGs+ + q+l++   ++++l++  ++  ++   +e+   k +     + + gd+r+++ ++++l+++ +++v+h A lK V    
       CTQ27144.1   3 VLVTGGSGYIGSHTCVQLLQQGH-EVVILDNLCNSKRSVLPVIERLGGK-EA----TFIEGDIRNEALMTEILHDHAIEAVIHFAGLKAVGESV 90 
                      8******************9875.6677777777777777766444444.33....2356********************************** PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE.....GGG....S......S--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETT CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliSt.....DKA....v......nPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlg 173
                       +ple  ++Nv+gt ++++a  +agvk++++ S+     D      v       P + +G +K++ e++l+ l+k +   +  +++ R+ N +g
       CTQ27144.1  91 AKPLEYYDNNVTGTLKLVSAMRAAGVKNFIFSSSatvygDQPkipyVesfptgTPQSPYGKSKLMVEQILTDLQKAQ--PEWSIALLRYFNPVG 182
                      ******************************99973333333211221222222577889999999999999888887..567777888877666 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   1.9e-17   2.4e-14       1     138 [.       1     162 [.       1     173 [. 0.94
   2 ?   -3.5   0.0       3.4   4.3e+03     186     223 ..     236     272 ..     235     283 .. 0.63

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 1.9e-17
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT......................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre......................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaa 74 
                    mk+lvtG++G +Gs+   ql ++g+ev+ l++                       e d+++++ ++e+l+++  ++v++ A  +av +   ++ + 
     CTQ27144.1   1 MKVLVTGGSGYIGSHTCVQLLQQGHEVVILDNLcnskrsvlpvierlggkeatfiEGDIRNEALMTEILHDHAIEAVIHFAGLKAVGESVAKPLEY 96 
                    89**************************998778899*********************************************************** PP

                    HHHHTHHHHHHHHHHHHCT-E.EEEEEEGGGS-S-TTS-B-TTS--.--SSHHHHHHHHHHHHHHH CS
  RmlD_sub_bind  75 yavnaeavealAeaaaavgal.LihvStDyVFdGekkrpYeeddet.sPlnvYGrtKlaGEqavla 138
                    y  n++++ +l  a +a+g++ +i+ S+  V+  + k pY e+ +t  P++ YG++Kl  Eq   +
     CTQ27144.1  97 YDNNVTGTLKLVSAMRAAGVKnFIFSSSATVYGDQPKIPYVESFPTgTPQSPYGKSKLMVEQILTD 162
                    *******************9559*******************988836**************8876 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.4
                    HHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHH CS
  RmlD_sub_bind 186 ardlAevllqllekaaeekelagvyHlanegetswlef 223
                    + dlA+  ++++ek a+ k+   +y l++    s l++
     CTQ27144.1 236 VMDLADGHVAAMEKLAD-KAGVHIYNLGAGVGSSVLDV 272
                    56788888888888775.44466666666555555555 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   3.9e-12   4.9e-09       1     105 [.       3     127 ..       3     142 .. 0.82
   2 !    7.0   0.0    0.0029       3.7     191     232 ..     244     287 ..     212     288 .. 0.73

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 3.9e-12
                 EEESSTTSHHHHHHHHHHHHHT-EEEEE..ES-S...-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT..-SEEEE---GG.............S-HH CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvral..vRdt...kselakslkeaGvelvkgdlddkeslvealkg..vdvvfsvtgfy.............skei 79 
                 +lv+G++G++G++    ll++gh+v +l  + ++      +++ l  + +++++gd+ +++++ e+l++   ++v+   g++             ++++
  CTQ27144.1   3 VLVTGGSGYIGSHTCVQLLQQGHEVVILdnLCNSkrsVLPVIERLGGKEATFIEGDIRNEALMTEILHDhaIEAVIHFAGLKavgesvakpleyyDNNV 101
                 79***********************998333344433445788999999*****************986325678777777689999*******99*** PP

                 HHHHHHHHHHHHHS-SEEEEEE---G CS
        NmrA  80 edgkklvdAakeaGvkhfiySslgdd 105
                     klv+A  +aGvk+fi+Ss +  
  CTQ27144.1 102 TGTLKLVSAMRAAGVKNFIFSSSATV 127
                 *********************97655 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0029
                 HHHHHH.HHHHTTEEEEE.-SEEE-HHHHHHHHHHHHTS-EEEE CS
        NmrA 191 ikilkd.prklkgkrikl.agntlsgneivelfekkigktvkYt 232
                 ++++++  +k+ +++++l ag   s+ ++v++f+k+ gk+++Y 
  CTQ27144.1 244 VAAMEKlADKAGVHIYNLgAGVGSSVLDVVNAFSKACGKPINYH 287
                 555555333443333333255667899****************7 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0     1e-13   1.3e-10       1     107 [.       7     133 ..       7     172 .. 0.71
   2 ?   -3.0   0.0       4.6   5.9e+03     114     132 ..     293     311 ..     277     318 .. 0.75

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1e-13
                     TTTSHHHHHHHHHHHHC-T-EEEEEETT....HHHC.HHHH..CTTTCEEEE--TT-CCHHHHHHTT-S..EEEES---TCC...........HH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRn....pekl.aele..aeeglevvegdvtdvedlaealkgad..aVvsalggggk...........de 75 
                     G++G +G++ + +ll++g hev++l  n    + ++ + +e    ++++ +egd+ +++ ++e l ++   aV+  +g ++            d+
      CTQ27144.1   7 GGSGYIGSHTCVQLLQQG-HEVVIL-DNlcnsKRSVlPVIErlGGKEATFIEGDIRNEALMTEILHDHAieAVIHFAGLKAVgesvakpleyyDN 99 
                     9****************5.**9887.332312322224444445699*******************99655897777444443345566666633 PP

                     HH..HHHHHHHHHHCT--EEEEEEETTTTSGCGC CS
  NAD_binding_10  76 eg..aknivdaakeagvkRfvlvsaigvgdevpg 107
                     ++  + ++v a+++agvk f++ s++ v+ ++p+
      CTQ27144.1 100 NVtgTLKLVSAMRAAGVKNFIFSSSATVYGDQPK 133
                     3366************************987665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.6
                     HHCCHHHHHHHHHHHHHHH CS
  NAD_binding_10 114 kellkaylaakraaeellr 132
                     +  l ay+a+ ++a+++l+
      CTQ27144.1 293 DGDLPAYWADAAKADRELN 311
                     4567789999999999886 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   7.5e-11   9.6e-08       3     149 ..       3     136 ..       2     139 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 7.5e-11
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 +l+tGG G +G +++ +l+++g + ++l   +    +++++ +  +e+l g e ++++ D+ +++ ++++l++      +i+ vih Ag+ + +    +
  CTQ27144.1   3 VLVTGGSGYIGSHTCVQLLQQGHEVVILDNLC----NSKRSVLPVIERLgGKEATFIEGDIRNEALMTEILHDH-----AIEAVIHFAGLKAVGESVAK 92 
                 69*********************999998777....455668888888867899*********99999998876.....5*********9877665555 PP

                 -HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHH CS
          KR 101 taedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanY 149
                       + +   v+G+  L  +++   ++ f+ fSS a+++g + +  Y
  CTQ27144.1  93 PL----EYYDNNVTGTLKLVSAMRAAGVKNFI-FSSSATVYGDQPKIPY 136
                 54....5666789******************8.6777889998887777 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.1   1.2e-10   1.6e-07       3     117 ..       3     109 ..       1     174 [. 0.82

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.2e-10
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 vlvtG+s+ IG  ++ +l+++G +vv++d+  +  + v+  ++++ g++a++i++D+++++ + +++ +       ++++++ AG++ +g+    s ++
  CTQ27144.1   3 VLVTGGSGYIGSHTCVQLLQQGHEVVILDNLCNSKRSVLPVIERLgGKEATFIEGDIRNEALMTEILHDH-----AIEAVIHFAGLKAVGE----SVAK 92 
                 9********************************************9999*********777666665543.....6777888888843333....3444 PP

                 HHHHHHHHTHHHHHHHH CS
   adh_short 101 wervievNltgvflltr 117
                   ++++ N+tg+++l+ 
  CTQ27144.1  93 PLEYYDNNVTGTLKLVS 109
                 55566666666666655 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1     2e-07   0.00026       1     193 [.       5     166 ..       5     221 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2e-07
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEE.E-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE-- CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyll.vRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsa 95 
                    +TG++G++G++   +LL++  e  +++l   ++s++s++  +          ++l     +  +++eGD+ ++   L  e l++    ++++ih a
     CTQ27144.1   5 VTGGSGYIGSHTCVQLLQQGHE--VVILdNLCNSKRSVLPVI----------ERLG---GKEATFIEGDIRNEA--LMTEILHDH--AIEAVIHFA 81 
                    7999999999999999999885..444414455555555555..........2222...3344689****9998..566666665..799****** PP

                    SS-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHH CS
  NAD_binding_4  96 Atvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvr 188
                    +   + e++ +    ++ Nv+Gt ++++  ++   +  +++ S+a+v+g++  ++                 e    +  +  Y +sK + E+++ 
     CTQ27144.1  82 GLKAVGESVAKpleYYDNNVTGTLKLVSAMRAAGVK-NFIFSSSATVYGDQP-KI--------------PYVESFPTGTPQSPYGKSKLMVEQILT 161
                    999999988875558899*********988866666.9**************.44..............344555556677799999999999998 PP

                    HHHHH CS
  NAD_binding_4 189 earrr 193
                    + ++ 
     CTQ27144.1 162 DLQKA 166
                    87754 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   6.9e-06    0.0089       2      31 ..       2      32 ..       1      46 [. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.9e-06
                    EEEEE.--STTHHHHHHHHHHCTSEEEEE-S CS
  UDPG_MGDP_dh_N  2 kisvi.GlGYvGlvtaavlaeighevigvDi 31
                    k+ v  G+GY+G  t++ l ++ghev+++D+
      CTQ27144.1  2 KVLVTgGSGYIGSHTCVQLLQQGHEVVILDN 32
                    55555279*********************96 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     4e-05     0.052       6      61 ..      12      70 ..       8     118 .. 0.80
   2 ?   -3.4   0.0       4.3   5.6e+03      25      66 ..     238     279 ..     234     282 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4e-05
                  HHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHH CS
  adh_short_C2  6 IGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v..lecDVtdeeqvealve 61
                  IG ++  +l ++G evv+ d   ++k++v ++ e+lg + +  +e D+++e+ ++++  
    CTQ27144.1 12 IGSHTCVQLLQQGHEVVILDNLCNSKRSVLPVIERLGGKeAtfIEGDIRNEALMTEILH 70
                  999*********************************9555345*******987766554 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.3
                   ESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHH CS
  adh_short_C2  25 dlneeakkrveelaeelgaevlecDVtdeeqvealveevvek 66 
                   dl +   +++e+la++ g +++++ +   ++v ++v++  + 
    CTQ27144.1 238 DLADGHVAAMEKLADKAGVHIYNLGAGVGSSVLDVVNAFSKA 279
                   555555667788888888887777766666666666666655 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00031      0.39       1      42 [.       2      45 ..       2      79 .. 0.80
   2 ?   -1.9   0.0       3.3   4.2e+03      17      66 ..      67     115 ..      62     130 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00031
                    EEEEETTTSHHHHHH.HHHHHC.TSSEEEEEEEESTTTTTSBHH CS
  Semialdhyde_dh  1 kvaivGatGyvGqel.lrlLee.hpevelvvllsssrsaGkkla 42
                    kv + G++Gy+G+   ++lL++ h  v l  l+ s+rs    ++
      CTQ27144.1  2 KVLVTGGSGYIGSHTcVQLLQQgHEVVILDNLCNSKRSVLPVIE 45
                    68999********988******9999999999999996544444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.3
                     HHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT CS
  Semialdhyde_dh  17 rlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelke 66 
                     ++L++h    ++++++ +   G+ +a+  +  +++ + +++ v++   ++
      CTQ27144.1  67 EILHDHAIEAVIHFAGLKA-VGESVAKPLEYYDNNVTGTLKLVSAMRAAG 115
                     5666666555666665555.777777766644444444444444444444 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00056      0.71       5      63 ..       8      73 ..       3      81 .. 0.79
   2 ?   -1.0   0.0       1.6     2e+03       4      25 ..      81     102 ..      78     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00056
                S-SHHHHHHHHHHHH.TTEEEEEEES..SHHH.....HHHHHHTTSEEEES-TTSHHHHHHTTGGGE CS
      TrkA_N  5 GlGrvGrslaeeLse.ggkdvvvidk..deer.....veelreeglevvvgdatdeevLeeagieka 63
                G G +G++ + +L + g+ +vv+ d+  + +r     +e+l  ++++++ gd  +e+++ e+  ++a
  CTQ27144.1  8 GSGYIGSHTCVQLLQqGH-EVVILDNlcNSKRsvlpvIERLGGKEATFIEGDIRNEALMTEILHDHA 73
                6899******99999556.6*****8443444666668888888899***********999877766 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
                 ES-SHHHHHHHHHHHHTTEEEE CS
      TrkA_N   4 iGlGrvGrslaeeLseggkdvv 25 
                 +Gl  vG+s+a+ L+ + ++v+
  CTQ27144.1  81 AGLKAVGESVAKPLEYYDNNVT 102
                 689999****999988443565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2421.48
//
Query:       CTQ27145.1  [L=490]
Description: fused molybdate transporter subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.7e-47  158.9   0.0    1.3e-25   90.5   0.0    2.2  2  ABC_tran        ABC transporter
      1e-16   61.6  12.8    3.8e-08   33.5   0.4    4.2  4  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
      5e-08   33.5   7.0    0.00035   21.0   1.5    3.0  2  AAA_16          AAA ATPase domain
    9.3e-08   31.7   0.1     0.0054   16.5   0.0    2.6  2  AAA_29          P-loop containing region of AAA domain
    2.8e-07   30.6   0.3       0.23   11.4   0.1    3.3  3  RsgA_GTPase     RsgA GTPase
    3.6e-07   29.8   3.1       0.22   11.0   0.9    4.0  3  SMC_N           RecF/RecN/SMC N terminal domain
    2.4e-06   27.9   2.1       0.12   12.6   0.1    3.6  2  AAA_22          AAA domain
    2.9e-06   27.9   0.4      0.033   14.7   0.0    2.4  2  AAA_23          AAA domain
    3.3e-05   24.0   0.2      0.021   15.1   0.1    3.6  2  SbcCD_C         Putative exonuclease SbcCD, C subunit
    6.1e-05   23.2   0.4        0.1   12.7   0.1    2.8  2  AAA_33          AAA domain
    9.5e-05   22.2   3.0       0.22   11.2   0.1    4.5  4  IstB_IS21       IstB-like ATP binding protein
     0.0002   21.4   0.5        1.2    9.2   0.0    3.1  2  MMR_HSR1        50S ribosome-binding GTPase
    0.00032   20.0   0.0        1.6    7.9   0.0    3.4  3  NB-ARC          NB-ARC domain
     0.0006   19.6   0.0       0.36   10.5   0.0    2.6  3  AAA_15          AAA ATPase domain
    0.00076   19.9   0.1       0.16   12.4   0.0    3.1  2  AAA             ATPase family associated with various cellula
     0.0025   17.3   0.0       0.63    9.5   0.0    2.5  2  AAA_7           P-loop containing dynein motor region
     0.0032   17.8   0.0        1.2    9.5   0.0    2.5  2  RNA_helicase    RNA helicase
     0.0033   16.9   0.0      0.093   12.1   0.0    2.3  2  Mg_chelatase    Magnesium chelatase, subunit ChlI
     0.0033   17.7   0.0       0.82    9.9   0.0    2.4  2  AAA_28          AAA domain
     0.0038   17.3   0.0        0.3   11.1   0.0    2.3  2  Dynamin_N       Dynamin family
     0.0056   16.3   0.6        1.2    8.7   0.4    3.1  3  AAA_25          AAA domain
     0.0059   15.9   0.1        3.5    6.9   0.0    2.3  2  Zeta_toxin      Zeta toxin
     0.0089   15.6   0.0       0.76    9.3   0.0    2.3  2  Ploopntkinase1  P-loop Nucleotide Kinase1
  ------ inclusion threshold ------
       0.01   16.4   0.0        3.6    8.1   0.0    2.5  2  AAA_18          AAA domain
      0.014   15.2   0.4        6.7    6.4   0.0    3.5  3  AAA_30          AAA domain
      0.034   13.9   0.0        3.8    7.2   0.0    2.3  2  HopA1           HopA1 effector protein family
      0.041   13.8   6.9        1.7    8.5   1.5    3.6  3  NACHT           NACHT domain
      0.043   12.7   0.2        2.5    6.9   0.0    2.4  2  AAA_10          AAA-like domain
      0.048   11.2   0.0        0.1   10.1   0.0    1.4  1  DUF3584         Protein of unknown function (DUF3584)
      0.074   12.6   0.1        1.4    8.4   0.0    2.3  2  AAA_27          AAA domain
       0.17   11.1   0.5        2.6    7.2   0.1    2.2  2  DUF2813         Protein of unknown function (DUF2813)
       0.29    9.7   0.1        8.5    4.9   0.0    2.1  2  AAA_13          AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   5.8e-21   3.3e-18       5     136 ..      23     163 ..      19     164 .. 0.77
   2 !   90.5   0.0   2.4e-28   1.3e-25       2     136 ..     277     429 ..     276     430 .. 0.91

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 5.8e-21
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS...--S-TTSBHHHH.................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx.................xxxx RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe...pqlfpeltvren.................esde 83 
                 +l++ +ge +a+vG+nG+GKS L+++lag l+  +G+ +     +++ + e+l+k ++   q    + l                          ++ +
  CTQ27145.1  23 HLSVAAGESWAFVGSNGSGKSALARALAGDLTLLSGQRESHFSRVTRLSFEQLQKLVSDEWQRnntDLLS-------PgeedtgrttaeiiqdevKDPA 114
                 6899********************************9855555555544444444444433331111122.......1222455566777777788888 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++++++++g++ l d++     + LS G+ ++  l++al+++p+ll+lDEp+
  CTQ27145.1 115 RCARLAEQFGISALLDRRF----KYLSTGETRKTLLCQALMTDPQLLILDEPF 163
                 8******************....9****************************6 PP

  == domain 2  score: 90.5 bits;  conditional E-value: 2.4e-28
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSB.HHHH...............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx.xxxx...............xxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp.teGeilldgkdlke.qeleslrkeigvlpqepqlfpelt.vren...............esd 82 
                 +++s+++++ge ++ivG+nGaGKStLl+l++g + +  + +++l g+   + +++   +k+ig+++   +l+++++ + +n                sd
  CTQ27145.1 277 NHLSWTVNPGEHWQIVGPNGAGKSTLLSLVTGDHPQgYSNDLTLFGRRRGSgETIWDIKKHIGYVSSSLHLDYRVStNVRNvilsgyfdsigiyqaVSD 375
                 789*****************************987777778888766555559*******************9998666669*************9999 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++ + + ++l++ ++++++++   +sLS Gq++   ++ral+k+p+ll+lDEp 
  CTQ27145.1 376 KQHKLVQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPL 429
                 99999999999999999***9999*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.2   8.9e-05      0.05       4      21 ..      34      51 ..      33     109 .. 0.76
   2 ?    6.6   0.1     0.011         6     237     293 ..     136     189 ..      71     191 .. 0.79
   3 !   14.9   0.2   3.2e-05     0.018       4      40 ..     291     326 ..     291     357 .. 0.72
   4 !   33.5   0.4   6.8e-11   3.8e-08     226     298 ..     391     461 ..     354     463 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.9e-05
      AAA_21  4 liGpNgsGKSnLLdaldl 21
                ++G NgsGKS L +al +
  CTQ27145.1 34 FVGSNGSGKSALARALAG 51
                89**************54 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.011
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvi 293
                 lS G  r   l  al  ++    ll++DEp  gL+      l+ ll +l++ g+ ++
  CTQ27145.1 136 LSTGETRKTLLCQALMTDP---QLLILDEPFDGLDVNSRQQLAALLADLHSAGITLV 189
                 4777777745666666655...9*************999999988877776677776 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 3.2e-05
      AAA_21   4 liGpNgsGKSnLLdaldllarldrdvegltdelsggg 40 
                 ++GpNg+GKS+LL +  + +  ++++++lt + +++g
  CTQ27145.1 291 IVGPNGAGKSTLLSLVTGDHP-QGYSNDLTLFGRRRG 326
                 89***********98844333.666666665555555 PP

  == domain 4  score: 33.5 bits;  conditional E-value: 6.8e-11
      AAA_21 226 ngdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP...kllrrllell.kelsrngaQviltTHS 298
                 ++++ + p+++lS G++rl al++  l  ++  +ll++DEp  gL+P   +l+rr++++l  e     +Q+++++H 
  CTQ27145.1 391 DKRTADAPFHSLSWGQQRL-ALIVRALVKHP--TLLILDEPLQGLDPlnrQLVRRFVDVLiGEG---ATQLLFVSHH 461
                 5677788************.99999999998..**************88888899998883333...57*******6 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   1.5   6.3e-07   0.00035      25     166 ..      30     185 ..      16     192 .. 0.61
   2 !   14.2   0.4   7.8e-05     0.044      29     161 ..     291     446 ..     278     458 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 6.3e-07
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala................. 106
                 e+  ++G  G+GKs+l+r+l+  l+     +l+g+ +++     +s ++++  +e+l ++l         ++w++  ++ l+                 
  CTQ27145.1  30 ESWAFVGSNGSGKSALARALAGDLT-----LLSGQRESH-----FSRVTRLS-FEQL-QKL-------VSDEWQRNNTDLLSpgeedtgrttaeiiqde 109
                 667889**************96444.....578888888.....33333333.3232.222.......2233333333333322233334444553333 PP

      AAA_16 107 ...avpelagaea.......srllellkrllallsrder............plvlvlD.dlqwadeaslqllaaLlrlleskp 166
                    ++       +         + +ll r +++ls++e             p +l+lD  ++ +d  s+q laaLl++l s  
  CTQ27145.1 110 vkdPA-------RcarlaeqFGISALLDRRFKYLSTGETrktllcqalmtdPQLLILDePFDGLDVNSRQQLAALLADLHSAG 185
                 22322.......244445546666666666677777666888888888888877777736************99999877733 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 7.8e-05
      AAA_16  29 lsGesGvGKsslvrellralekd.......................g.gif.lrgkcdql.esaipysalaqalareellrqlldeaesaeleawrekl 101
                 ++G+ G GKs+l+  +     +                        + g++  + + d   +++++ ++l  +++    + q  ++++ +++++w + l
  CTQ27145.1 291 IVGPNGAGKSTLLSLVTGDHPQGysndltlfgrrrgsgetiwdikkHiGYVsSSLHLDYRvSTNVRNVILSGYFDS-IGIYQAVSDKQHKLVQQWLDIL 388
                 89***********999976666688889999999999888888887545554444444444444444556666655.4555666666888999999944 PP

      AAA_16 102 eealaavpelagaea........srllellkrllallsrderplvlvlDd.lqwadeaslqllaaLlrl 161
                        ++ +++++        +rl+  +++l+      ++p++l+lD+ lq +d+  +ql + +++ 
  CTQ27145.1 389 GI-----DKRTADAPfhslswgqQRLALIVRALV------KHPTLLILDEpLQGLDPLNRQLVRRFVDV 446
                 33.....333333335445666666666666666......89999999955***********9999886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   0.00019      0.11      19      43 ..      26      50 ..      12      65 .. 0.72
   2 !   16.5   0.0   9.6e-06    0.0054      15      39 ..     279     303 ..     270     313 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00019
      AAA_29 19 idlkgatlltGpsGsGKSTllDAiq 43
                +   ++  ++G +GsGKS+l  A++
  CTQ27145.1 26 VAAGESWAFVGSNGSGKSALARALA 50
                44334889***********987774 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 9.6e-06
      AAA_29  15 htieidlkgatlltGpsGsGKSTll 39 
                  ++++++ +   ++Gp+G+GKSTll
  CTQ27145.1 279 LSWTVNPGEHWQIVGPNGAGKSTLL 303
                 578899888999************8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00041      0.23      88     127 ..      19      57 ..       4      69 .. 0.76
   2 ?    4.3   0.0     0.059        33      32      61 ..     171     200 ..     165     217 .. 0.86
   3 !   10.7   0.0   0.00066      0.37      86     122 ..     272     309 ..     253     344 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00041
                  TTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  88 egleelkellkdktsvlvGqSGvGKStLinallpelelkt 127
                   ++++l+ + +++  ++vG+ G GKS+L  al+++l+l  
   CTQ27145.1  19 LKIDHLS-VAAGESWAFVGSNGSGKSALARALAGDLTLLS 57 
                  4555553.55778999*****************9987655 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.059
                  HHHHHHHHHHHHHTT-EEEEEEE-GGG--H CS
  RsgA_GTPase  32 lnlldrfLvlaeekgiepvivlnKiDllee 61 
                   ++l  +L+ ++++gi++v+vln+ D + e
   CTQ27145.1 171 RQQLAALLADLHSAGITLVLVLNRFDEIPE 200
                  57888999******************9876 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00066
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                  ++  +++l+  ++  +   +vG+ G+GKStL+  ++++
   CTQ27145.1 272 DRPVINHLSWTVNPgEHWQIVGPNGAGKSTLLSLVTGD 309
                  55566666666666577889************998876 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.9   0.00039      0.22      27      45 ..      32      50 ..      10     200 .. 0.79
   2 !   10.0   0.0   0.00076      0.43      26      41 ..     288     303 ..     261     307 .. 0.72
   3 ?    5.0   0.0     0.025        14     136     200 ..     401     463 ..     343     472 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00039
                EEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 27 taivGpNGSGKsnlldAil 45
                 a vG+NGSGKs l  A+ 
  CTQ27145.1 32 WAFVGSNGSGKSALARALA 50
                4679***********9985 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00076
                 EEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnll 41 
                 +  ivGpNG+GKs ll
  CTQ27145.1 288 HWQIVGPNGAGKSTLL 303
                 457**********987 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.025
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislree 200
                 +LS G++ L   aL++    vk   l +lDe  + LD  n++ v ++++    +  +Q++ +s+++e
  CTQ27145.1 401 SLSWGQQRL---ALIVRAL-VKHPTLLILDEPLQGLDPLNRQLVRRFVDVLIGEgaTQLLFVSHHAE 463
                 788888875...5664433.45556999**************9999998554333499999998765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.3   0.00045      0.25       9     128 ..      33     191 ..      28     196 .. 0.67
   2 !   12.6   0.1   0.00021      0.12      10     127 ..     291     457 ..     285     465 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00045
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee......................erpevvfvtlpsstsskdllrellralglelka............... 70 
                 + +G  G+GK+ l+r l+  l+  + ++e                      +             + +dll+           +               
  CTQ27145.1  33 AFVGSNGSGKSALARALAGDLTLLSGQREshfsrvtrlsfeqlqklvsdewQ------------RNNTDLLSPGE--------Edtgrttaeiiqdevk 111
                 56899**************998777777775544433332222222222221............12222222222........2333355557777777 PP

      AAA_22  71 ......................erlsseellealeqalraravielliiDE.aqhlr..seealeeLrsllnlsrkgvqliLv 128
                                       + ls+ e +++l  ++  ++  +lli+DE ++ l+  s ++l  L  l++l++ g++l+Lv
  CTQ27145.1 112 dparcarlaeqfgisalldrrfKYLSTGETRKTLLCQALMTDP-QLLILDEpFDGLDvnSRQQLAAL--LADLHSAGITLVLV 191
                 7777788998888888888888888888888666666666666.7******6677988778888888..66667899999987 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00021
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee.......................................erpevv........fvtlpsstsskdllrell 61 
                 ++G+ G+GK+tll  ++  +++ ++ +                                             +         ++ ++s ++ +l ++ l
  CTQ27145.1 291 IVGPNGAGKSTLLSLVTGDHPQGYSNDLtlfgrrrgsgetiwdikkhigyvssslhldyrvstnvrnV----IlsgyfdsiGIYQAVSDKQHKLVQQWL 385
                 89******************999888889999999999999999988888888888887777644330....233444444667777777777777777 PP

      AAA_22  62 ralglelka.....erlsseell.ealeqalraravielliiDE.aqhlrseealeeLrsllnl..srkgvqliL 127
                  +lg ++ +       ls  + + +++ +al ++ +  lli+DE  q l  + + + +r+++++  ++  +ql++
  CTQ27145.1 386 DILGIDKRTadapfHSLSWGQQRlALIVRALVKHPT--LLILDEpLQGL-DPLNRQLVRRFVDVliGEGATQLLF 457
                 777777777887774444444444777777777777..99999844557.3222233344444444555555554 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00075      0.42      24      42 ..      34      52 ..      31     144 .. 0.81
   2 !   14.7   0.0   5.8e-05     0.033      24      37 ..     291     304 ..     289     353 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00075
      AAA_23 24 ItGpNGaGKTTildAikla 42
                ++G NG+GK+++ +A+   
  CTQ27145.1 34 FVGSNGSGKSALARALAGD 52
                89*************9754 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 5.8e-05
      AAA_23  24 ItGpNGaGKTTild 37 
                 I+GpNGaGK+T+l 
  CTQ27145.1 291 IVGPNGAGKSTLLS 304
                 9***********96 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   3.7e-05     0.021      62      89 ..     152     179 ..     117     180 .. 0.79
   2 ?    4.0   0.0       0.1        57      62      84 ..     418     440 ..     399     445 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.7e-05
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                 ++++l++LDE F++lD +s+++l +ll+
  CTQ27145.1 152 TDPQLLILDEPFDGLDVNSRQQLAALLA 179
                 4699*******************99985 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.1
     SbcCD_C  62 palrlvfLDEAFsklDeesiatl 84 
                 +++ l++LDE  ++lD+ +++ +
  CTQ27145.1 418 KHPTLLILDEPLQGLDPLNRQLV 440
                 56899***********9888765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   0.00019       0.1       3      24 ..      33      54 ..      32     192 .. 0.81
   2 !    7.9   0.0    0.0056       3.1       4      19 ..     291     306 ..     289     319 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00019
      AAA_33  3 llvGlpGsGKstlaerllkklg 24
                 +vG +GsGKs la+ l+  l+
  CTQ27145.1 33 AFVGSNGSGKSALARALAGDLT 54
                69***************97776 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0056
      AAA_33   4 lvGlpGsGKstlaerl 19 
                 +vG++G+GKstl+  +
  CTQ27145.1 291 IVGPNGAGKSTLLSLV 306
                 69**********8765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   0.00039      0.22      44      91 ..      26      76 ..      10      92 .. 0.75
   2 ?    3.6   0.0     0.089        50      24     137 ..      64     181 ..      59     214 .. 0.52
   3 ?    3.4   0.0     0.098        55      41      63 ..     279     302 ..     271     309 .. 0.79
   4 ?    1.9   0.0      0.28   1.6e+02      96     132 ..     406     445 ..     400     455 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00039
   IstB_IS21 44 iekkenivllGpsGvGKshlaialgveavr..aglsvlfvrvedL.veelk 91
                +++ e+ +++G  G GKs la al+ +      + +  f rv++L +e+l+
  CTQ27145.1 26 VAAGESWAFVGSNGSGKSALARALAGDLTLlsGQRESHFSRVTRLsFEQLQ 76
                6778999*****************976543315556778888888445555 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.089
   IstB_IS21  24 fraarsldkrkvkeLatlsfiekkenivllGpsGvGKshlaialgveavraglsvl....fvrvedLv.eelkrarrdgklaral..krllkvdllilD 115
                 f+  + l+ +++++L+++++ +++  ++  G   +G++   + + ++ v++  +       + +++L+ ++ k   + +  ++ l  + ++ ++llilD
  CTQ27145.1  64 FSRVTRLSFEQLQKLVSDEWQRNNTDLLSPGEEDTGRTT--AEIIQDEVKDPARCArlaeQFGISALLdRRFKYLSTGETRKTLLcqALMTDPQLLILD 160
                 666667777778888888888888888777777777773..2223333332222210000111222220222222222222222210223345777777 PP

   IstB_IS21 116 dlgllpldqaeaellfeviekr 137
                 +  +  ld +++++l  ++++ 
  CTQ27145.1 161 EP-FDGLDVNSRQQLAALLADL 181
                 63.5566666666666666655 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.098
   IstB_IS21  41 lsf.iekkenivllGpsGvGKshl 63 
                 ls+ ++  e   ++Gp G+GKs l
  CTQ27145.1 279 LSWtVNPGEHWQIVGPNGAGKSTL 302
                 666345578889*********987 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.28
   IstB_IS21  96 dgklaralkrllkv.dllilDd..lgllpldqaeaellfe 132
                 +++la ++++l+k  +llilD+   gl pl+++  + + +
  CTQ27145.1 406 QQRLALIVRALVKHpTLLILDEplQGLDPLNRQLVRRFVD 445
                 6677788888887669*****9545777777776555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0022       1.2       3      33 ..      33      68 ..      31      90 .. 0.76
   2 !    9.1   0.1    0.0023       1.3       4      22 ..     291     309 ..     288     411 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0022
                EEEESTTSSHHHHHHHHHTS.....TEEESSSTTSS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge.....kaivsdkpgtT 33
                a+vG   +GKS L +al g+       + s++  +T
  CTQ27145.1 33 AFVGSNGSGKSALARALAGDltllsGQRESHFSRVT 68
                89****************964322133455555555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0023
                 EEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   4 ivGrpNvGKStLinaltge 22 
                 ivG   +GKStL++  tg+
  CTQ27145.1 291 IVGPNGAGKSTLLSLVTGD 309
                 9*************99986 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0061       3.4      24      85 ..      33      92 ..      20     169 .. 0.66
   2 !    7.9   0.0    0.0028       1.6       8      45 ..     275     311 ..     269     317 .. 0.83
   3 ?    0.0   0.0      0.71     4e+02      60     111 ..     374     427 ..     350     433 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0061
                EEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEESXXHHHHHHHXXHHHHHCCCTTSSS CS
      NB-ARC 24 alvGmgGvGKttlakqilnksdevegrFdsvawvvvsktdkseeiletilkeLslseddlee 85
                a+vG  G+GK+ la+    ++  + g+ +s+    v++  + e++++ +  e ++++ dl +
  CTQ27145.1 33 AFVGSNGSGKSALARALAGDLTLLSGQRESHFS-RVTR-LSFEQLQKLVSDEWQRNNTDLLS 92
                689**************9999988887665443.2222.23334444444444444444444 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0028
                 HHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC   8 viekLlekdelqslvvalvGmgGvGKttlakqilnksd 45 
                 vi++L+   +++     +vG  G GK+tl++ +  ++ 
  CTQ27145.1 275 VINHLSWTVNPG-EHWQIVGPNGAGKSTLLSLVTGDHP 311
                 788888888888.5669*************99987765 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.71
                 ESXXHHHHHHHXXHHHHHCCCTTSSSS-STTS....HHHHHHHHCCCTTEEEEEEE CS
      NB-ARC  60 sktdkseeiletilkeLslseddleekeeves....lkrklvrlLltkrfllvlDD 111
                 s  dk+++++++ l  L+  +   +   ++ s    +   +vr+L ++ +ll+lD 
  CTQ27145.1 374 S--DKQHKLVQQWLDILGIDKRTADAPFHSLSwgqqRLALIVRALVKHPTLLILDE 427
                 4..45666666677777666555555444444565578889*************95 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00065      0.36      26      43 ..      32      49 ..      13     143 .. 0.86
   2 ?    6.2   0.0     0.013         7      28      41 ..     291     304 ..     287     306 .. 0.91
   3 ?   -2.2   0.0       4.5   2.5e+03     290     311 ..     395     416 ..     341     460 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00065
      AAA_15 26 tvliGkNnsGKSsileal 43
                  ++G N+sGKS +++al
  CTQ27145.1 32 WAFVGSNGSGKSALARAL 49
                57**************99 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.013
      AAA_15  28 liGkNnsGKSsile 41 
                 ++G+N++GKS++l 
  CTQ27145.1 291 IVGPNGAGKSTLLS 304
                 8***********96 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.5
      AAA_15 290 eelplnknGsGvqrllllilli 311
                  + p++  + G+qrl l++  +
  CTQ27145.1 395 ADAPFHSLSWGQQRLALIVRAL 416
                 5678888888999998887544 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00029      0.16       3      35 ..      34      76 ..      32     205 .. 0.77
   2 ?    3.9   0.0      0.12        69       3      19 ..     291     307 ..     290     324 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00029
                EESSTTSSHHHHHHHHHHHH.......T...HEEEEEETTTCS CS
         AAA  3 lyGppGtGKTllakavakel.......g...vefleisgsell 35
                ++G  G GK++la+a+a +l       +   +++ ++s  +l 
  CTQ27145.1 34 FVGSNGSGKSALARALAGDLtllsgqrEshfSRVTRLSFEQLQ 76
                79*****************855554332223334444444444 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.12
                 EESSTTSSHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakava 19 
                 ++Gp G GK++l + v 
  CTQ27145.1 291 IVGPNGAGKSTLLSLVT 307
                 58**********99886 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0011      0.63      28      97 ..      24      94 ..      14     101 .. 0.77
   2 ?    5.0   0.0     0.027        15      29      56 ..     282     309 ..     259     328 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0011
       AAA_7 28 lllknkkpvllvGptGtGKtviikdllkkld.kekylsltinfsaqtsanqlqdiiesklekrrkgvygPp 97
                l ++++ +  +vG+ G+GK+++++ l   l   +     +++   + s +qlq+++ ++ ++ + +++ P 
  CTQ27145.1 24 LSVAAGESWAFVGSNGSGKSALARALAGDLTlLSGQRESHFSRVTRLSFEQLQKLVSDEWQRNNTDLLSPG 94
                5577888999***************9999983334444444445566788999999999888888888775 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.027
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkk 56 
                  ++ + +  +vGp G GK+++++ ++  
  CTQ27145.1 282 TVNPGEHWQIVGPNGAGKSTLLSLVTGD 309
                 5677889999**********98866555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0022       1.2       3      23 ..      34      54 ..      32      83 .. 0.80
   2 ?    5.8   0.0     0.032        18       2      17 ..     290     305 ..     289     334 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0022
  RNA_helicase  3 lyGpsgeGKStlakeLakall 23
                  ++G++g GKS la+ La +l+
    CTQ27145.1 34 FVGSNGSGKSALARALAGDLT 54
                  89***************9998 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.032
  RNA_helicase   2 wlyGpsgeGKStlake 17 
                    ++Gp+g GKStl   
    CTQ27145.1 290 QIVGPNGAGKSTLLSL 305
                   589*********9876 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00017     0.093      17      65 ..      24      72 ..      14      87 .. 0.79
   2 ?    2.2   0.0      0.18     1e+02      24      42 ..     288     306 ..     278     317 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00017
  Mg_chelatase 17 iaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvag 65
                  +++a g +  +vG+ GsGK+ la++l++ l+ ls +     ++++ ++ 
    CTQ27145.1 24 LSVAAGESWAFVGSNGSGKSALARALAGDLTLLSGQRESHFSRVTRLSF 72
                  45666778899****************9999999888888777776665 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.18
  Mg_chelatase  24 nlllvGppGsGKtmlakrl 42 
                   +  +vGp G+GK+ l + +
    CTQ27145.1 288 HWQIVGPNGAGKSTLLSLV 306
                   35679********997755 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0015      0.82       3      39 ..      33      76 ..      31     126 .. 0.63
   2 ?    5.4   0.0     0.035        20       4      20 ..     291     307 ..     289     317 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0015
      AAA_28  3 vitGgestGKTtlleaLa..........argypvvpEaareileekl 39
                +++G  ++GK+ l++aLa          +   +++ ++ r  +e+++
  CTQ27145.1 33 AFVGSNGSGKSALARALAgdltllsgqrE---SHFSRVTRLSFEQLQ 76
                699***************65554443220...233444444444443 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.035
      AAA_28   4 itGgestGKTtlleaLa 20 
                 i+G+ ++GK+tll+  +
  CTQ27145.1 291 IVGPNGAGKSTLLSLVT 307
                 89**********98765 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00054       0.3       2      73 ..      33     106 ..      33     195 .. 0.61
   2 ?    3.8   0.0     0.093        52       3      22 ..     291     310 ..     290     318 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00054
                 EEEEBTTTTHHHHHHHHHTS--S---SS.S---S-EEEEECCT---CCS...SSEEEE.....T-EB--CHHHHHHHH CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpn.ptTrrplelqlgeeeeaseravkeelkek.....ekkledfsevreeie 73 
                 a+vGs  sGKS+++ aL g+  l +g+      r++ l+ ++ ++      ++e++ +     +  +ed  + + ei 
  CTQ27145.1  33 AFVGSNGSGKSALARALAGDLTLLSGQReSHFSRVTRLSFEQLQKLV----SDEWQRNntdllSPGEEDTGRTTAEII 106
                 689******************99999874667888888888877744....333333323335444444444444444 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.093
                 EEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlged 22 
                 +vG   +GKS++l  ++g++
  CTQ27145.1 291 IVGPNGAGKSTLLSLVTGDH 310
                 799**********9888876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.4    0.0021       1.2      30      80 ..      26      73 ..      17     192 .. 0.71
   2 ?   -1.1   0.0       2.1   1.2e+03      88     131 ..     172     228 ..     159     241 .. 0.67
   3 ?    3.8   0.0     0.066        37      37      51 ..     290     304 ..     274     310 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0021
      AAA_25 30 lpagelallaGapgtGKttlaldlalava..tGkpwlgpvapeqgkVlyvsaE 80
                ++age  +++G  g+GK++la  la +++  +G+      ++   +V  +s+E
  CTQ27145.1 26 VAAGESWAFVGSNGSGKSALARALAGDLTllSGQR-----ESHFSRVTRLSFE 73
                56899999*****************9999655553.....2333455555555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.1
      AAA_25  88 rRlravgeal............rddarllvldlagv.eslpLfakdrggtlltadvd 131
                 + l+a++++l            r+d+   +++ agv  + +L +++ +++ll++++ 
  CTQ27145.1 172 QQLAALLADLhsagitlvlvlnRFDEIPEFVQFAGVlADCTLSETGEKSSLLQQALV 228
                 455555555566666667777777888888888888888888888888888766642 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.066
      AAA_25  37 llaGapgtGKttlal 51 
                  ++G+ g+GK+tl++
  CTQ27145.1 290 QIVGPNGAGKSTLLS 304
                 579**********86 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0062       3.5      22      40 ..      35      53 ..      30      68 .. 0.87
   2 !    6.6   0.0    0.0077       4.3      20      41 ..     290     311 ..     287     319 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0062
  Zeta_toxin 22 gGqpGAGKselaellkdel 40
                +G+ G+GKs+la++l+ +l
  CTQ27145.1 35 VGSNGSGKSALARALAGDL 53
                79************99877 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0077
  Zeta_toxin  20 llgGqpGAGKselaellkdele 41 
                 +++G  GAGKs+l++l++ ++ 
  CTQ27145.1 290 QIVGPNGAGKSTLLSLVTGDHP 311
                 58899***********998884 PP

>> Ploopntkinase1  P-loop Nucleotide Kinase1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.064        36      11      36 ..      23      48 ..      15      53 .. 0.79
   2 !    9.3   0.0    0.0014      0.76      17      46 ..     286     315 ..     276     320 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.064
  Ploopntkinase1 11 geypargelyyvkgsngsgkstvpsy 36
                        a ge +   gsngsgks++   
      CTQ27145.1 23 HLSVAAGESWAFVGSNGSGKSALARA 48
                    556789999999*********98765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0014
  Ploopntkinase1  17 gelyyvkgsngsgkstvpsylaekdpeayv 46 
                     ge + + g ng+gkst+ s ++   p+ y 
      CTQ27145.1 286 GEHWQIVGPNGAGKSTLLSLVTGDHPQGYS 315
                     8999999********************996 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0065       3.6       4      44 ..      35      77 ..      33     107 .. 0.74
   2 ?    5.9   0.0     0.033        18       3      19 ..     291     310 ..     290     398 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0065
      AAA_18  4 tGtpGvGKttlakeLskrlgf..gvnlrdvakenglllevdpe 44
                 G  G+GK+ la++L+  l +  g++ ++  +  +l++e+ ++
  CTQ27145.1 35 VGSNGSGKSALARALAGDLTLlsGQRESHFSRVTRLSFEQLQK 77
                5888***********8887556877777777777777777777 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.033
      AAA_18   3 ltGtpGvGKttlakeL...s 19 
                 + G+ G+GK+tl   +    
  CTQ27145.1 291 IVGPNGAGKSTLLSLVtgdH 310
                 78**********98875441 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1      0.07        39      60     122 ..     117     191 ..      21     193 .. 0.68
   2 ?    6.4   0.0     0.012       6.7      23      39 ..     291     307 ..     282     319 .. 0.86
   3 ?   -2.6   0.0       6.7   3.8e+03      68      96 ..     390     427 ..     370     429 .. 0.61

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.07
      AAA_30  60 kvLaeelgieastiakllkrlk........grarlepgtllivDE....agmvdtkqlaallkaaekagakvilv 122
                 ++Lae++gi a    ++ +  +         +a +++ +lli DE      + + +qlaall+ +++ag++++lv
  CTQ27145.1 117 ARLAEQFGISALLDRRFKYLSTgetrktllCQALMTDPQLLILDEpfdgLDVNSRQQLAALLADLHSAGITLVLV 191
                 345555665555555555444466777776334555668888888432223447888888888888888888876 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.012
      AAA_30  23 ltGpAGtGKttalkalr 39 
                 ++Gp G+GK+t+l+ ++
  CTQ27145.1 291 IVGPNGAGKSTLLSLVT 307
                 89***********9876 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 6.7
      AAA_30  68 ieastiakllkrlk.........grarlepgtllivDE 96 
                 i+ +t +   ++l           ra +++ tlli DE
  CTQ27145.1 390 IDKRTADAPFHSLSwgqqrlaliVRALVKHPTLLILDE 427
                 44444444444444666677777556666779999998 PP

>> HopA1  HopA1 effector protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.059        33     105     163 ..     114     186 ..     100     189 .. 0.66
   2 ?    7.2   0.0    0.0068       3.8     123     158 ..     397     429 ..     390     447 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.059
                 TT-EEEETTEEEEEE-T...T--S-HHHHHHHHHHHHHH-................-SS-HHHHHHHHHHHTTB CS
       HopA1 105 lftkrLapGlslAeepedkggdsesfGqhRaqiiAkALvea...............daeerlkaireqlraagi 163
                 + + rLa+ ++++   + +  + +s G+ R  ++++AL++                ++++ l+a+ + l+ agi
  CTQ27145.1 114 ARCARLAEQFGISALLD-RRFKYLSTGETRKTLLCQALMTDpqllildepfdgldvNSRQQLAALLADLHSAGI 186
                 55666666555555533.667889***************95444444433333333333377777777777776 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0068
                 ..T--S-HHHHHHHHHHHHHH-.-SS-HHHHHHHHH CS
       HopA1 123 kggdsesfGqhRaqiiAkALveadaeerlkaireql 158
                 +   s+s Gq+R ++i +ALv++   + l +++e l
  CTQ27145.1 397 APFHSLSWGQQRLALIVRALVKH---PTLLILDEPL 429
                 556899****************5...3333333333 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.5    0.0031       1.7       5      27 ..      34      56 ..      31     192 .. 0.68
   2 ?    5.5   0.0     0.026        14       5      20 ..     291     306 ..     288     321 .. 0.80
   3 ?   -0.2   0.1       1.5   8.4e+02      71      95 ..     404     437 ..     376     460 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0031
                EEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT  5 lqGeaGsGKTtLlqklalawaeg 27
                  G +GsGK++L++ la ++   
  CTQ27145.1 34 FVGSNGSGKSALARALAGDLTLL 56
                68**************9877543 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.026
                 EEC-TTTCHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqkl 20 
                 + G++G GK+tLl  +
  CTQ27145.1 291 IVGPNGAGKSTLLSLV 306
                 79**********9765 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.5
                 C.....CHHHHCCSCCCEEEEEE....-STT-SS CS
       NACHT  71 e.....vwavllelperlLlilD....glDelvt 95 
                         +v++ +++ +LlilD    glD l +
  CTQ27145.1 404 WgqqrlALIVRALVKHPTLLILDeplqGLDPLNR 437
                 0444446778888999999999955555555555 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0045       2.5      22      50 ..      30      58 ..      20      61 .. 0.83
   2 ?    3.2   0.0      0.06        34      22      39 ..     287     304 ..     279     308 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0045
      AAA_10 22 sasliiGdlGnGKSvlakllvlyisllgg 50
                  ++++G+ G GKS la+ l   ++ll g
  CTQ27145.1 30 ESWAFVGSNGSGKSALARALAGDLTLLSG 58
                468**************999888877765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.06
      AAA_10  22 sasliiGdlGnGKSvlak 39 
                  ++ i+G+ G+GKS l  
  CTQ27145.1 287 EHWQIVGPNGAGKSTLLS 304
                 699***********9875 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00018       0.1      14      37 ..     283     306 ..     280     307 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00018
     DUF3584  14 ldldghtnieGtNaaGKTtLlrLi 37 
                 +++ +h +i+G N+aGK tLl+L+
  CTQ27145.1 283 VNPGEHWQIVGPNGAGKSTLLSLV 306
                 57789*****************98 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0       0.3   1.7e+02      32      47 ..      35      50 ..      23      72 .. 0.88
   2 ?    8.4   0.0    0.0025       1.4      31      44 ..     291     304 ..     279     308 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.3
      AAA_27 32 yGpNEAGKstalrAis 47
                +G+N +GKs++ rA+ 
  CTQ27145.1 35 VGSNGSGKSALARALA 50
                7************985 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0025
      AAA_27  31 iyGpNEAGKstalr 44 
                 i+GpN AGKst+l+
  CTQ27145.1 291 IVGPNGAGKSTLLS 304
                 89*********997 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0046       2.6      14      43 ..      21      50 ..      20      68 .. 0.85
   2 ?    1.4   0.1      0.26   1.5e+02      14      40 ..     276     304 ..     275     309 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0046
     DUF2813 14 inrLSlsleentvLiGENaWGKSSLldALs 43
                i +LS+   e  +++G N  GKS L +AL 
  CTQ27145.1 21 IDHLSVAAGESWAFVGSNGSGKSALARALA 50
                89**************************97 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.26
     DUF2813  14 inrLSlslee..ntvLiGENaWGKSSLld 40 
                 in+LS ++++  +  ++G N  GKS Ll+
  CTQ27145.1 276 INHLSWTVNPgeHWQIVGPNGAGKSTLLS 304
                 899**99986226789***********97 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.015       8.5      23      38 ..      36      51 ..      33      90 .. 0.79
   2 ?    2.5   0.0     0.077        43      21      35 ..     291     305 ..     286     317 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.015
      AAA_13 23 GwNGaGKTtLSrllrs 38
                G+NG+GK+ L+r+l+ 
  CTQ27145.1 36 GSNGSGKSALARALAG 51
                9************985 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.077
      AAA_13  21 iYGwNGaGKTtLSrl 35 
                 i G NGaGK+tL +l
  CTQ27145.1 291 IVGPNGAGKSTLLSL 305
                 669********9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 3578.82
//
Query:       CTQ27146.1  [L=262]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-26   92.9   0.4    2.7e-13   50.0   0.3    2.3  2  TOBE         TOBE domain
      5e-15   55.2   0.0    1.1e-14   54.1   0.0    1.6  1  HTH_1        Bacterial regulatory helix-turn-helix protein, l
     0.0042   17.2   0.3      0.086   13.0   0.0    2.2  2  TOBE_2       TOBE domain
  ------ inclusion threshold ------
      0.011   15.7   0.8       0.27   11.2   0.1    2.5  2  TOBE_3       TOBE-like domain
       0.03   14.3   0.1       0.17   11.9   0.0    2.3  3  HTH_29       Winged helix-turn helix
      0.045   13.9   0.0       0.17   12.0   0.0    2.0  2  HTH_28       Helix-turn-helix domain
        0.1   12.9   0.1       0.27   11.6   0.1    1.8  1  PEX-2N       Peroxisome biogenesis factor 1, N-terminal
       0.14   12.3   0.0       0.74   10.1   0.0    2.0  2  tRNA_anti_2  OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.3   1.2e-16   2.7e-13       1      62 [.     125     187 ..     125     189 .. 0.98
   2 !   40.9   0.0   8.2e-14   1.8e-10       3      63 ..     199     257 ..     197     258 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 1.2e-16
        TOBE   1 ssarNqlpgtVvvveplgseveVrvdlggga.tLtArvtrrsaeeLgLapGeeVfalikaakv 62 
                 +sarNq+ gt++    ++++  V+v l++g+  L + +t +sae+LgL  G+eV +l+ka +v
  CTQ27146.1 125 TSARNQWFGTITGRDRQQVQQHVEVLLADGKtRLNVAITAQSAEKLGLDEGQEVLVLLKAPWV 187
                 7*************************************************************9 PP

  == domain 2  score: 40.9 bits;  conditional E-value: 8.2e-14
        TOBE   3 arNqlpgtVvvveplgseveVrvdlgggatLtArvtrrsaeeLgLapGeeVfalikaakvh 63 
                 a Nql g+++++e + +++eV ++l++g+tL+A+++ ++a+   La G e+ a ++a +++
  CTQ27146.1 199 ADNQLSGRISHIECGSGQCEVLMTLADGQTLCATLPQAQAAG--LAEGTEAIAYFNADRII 257
                 89*********************************9999999..*************9886 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   4.9e-18   1.1e-14       2      60 .]      20      83 ..      19      83 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 4.9e-18
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSE.....EEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrg.....lrLTeaGe 60
                r+++l++++ ++gs+++ A++ g+s+++++++i++++++ ++pL++R ++g     ++LT +G+
  CTQ27146.1 20 RRIALLKQIDQTGSISQGAKHAGISYKSAWDAINEMNQLSEQPLVDRATGGkggggAVLTRYGQ 83
                799********************************************666445567******97 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1       0.1   2.3e+02      18      66 ..     130     180 ..     118     187 .. 0.65
   2 !   13.0   0.0   3.8e-05     0.086      12      74 ..     196     257 ..     187     258 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.1
      TOBE_2  18 glsGtVedveylGsstryvvelaggqlvvvrqpnadr.d.salapGdtVel 66 
                 +  Gt++ +  +  + ++ v la+g+  + +   a+  +   l++G++V +
  CTQ27146.1 130 QWFGTITGRDRQQVQQHVEVLLADGKTRLNVAITAQSaEkLGLDEGQEVLV 180
                 555666666666667778888888776554444444444589999999976 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3.8e-05
      TOBE_2  12 aagganglsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpddav 74 
                 a++++n+lsG+++++e    + +++ +la+gq + +  p a+ ++ la+G++    +++d+++
  CTQ27146.1 196 ARQADNQLSGRISHIECGSGQCEVLMTLADGQTLCATLPQAQ-AAGLAEGTEAIAYFNADRII 257
                 334468**********99999************999999998.689*******9999999987 PP

>> TOBE_3  TOBE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00012      0.27      21      57 ..     145     180 ..     144     183 .. 0.90
   2 ?    2.4   0.0     0.066   1.5e+02       3      53 ..     199     245 ..     197     249 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
      TOBE_3  21 vRlELerlgdtgeliEvelprdrfeelglaeGetvyl 57 
                 +++E+ ++ d  + + v ++++ +e lgl eG++v +
  CTQ27146.1 145 QHVEVLLA-DGKTRLNVAITAQSAEKLGLDEGQEVLV 180
                 68999777.9999********************9976 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.066
      TOBE_3   3 aegglpatvrrirpvGpivRlELerlgdtgeliEvelprdrfeelglaeGe 53 
                 a++ l +++++i    + + +    l ++g+++ + lp ++    glaeG 
  CTQ27146.1 199 ADNQLSGRISHIECGSGQCEVLM-TL-ADGQTLCATLPQAQ--AAGLAEGT 245
                 77888999999988888888855.45.58899999999998..67888875 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.8e-05      0.17       1      52 [.      21      71 ..      21      78 .. 0.91
   2 ?   -1.8   0.0       1.5   3.3e+03      22      34 ..     136     148 ..     135     159 .. 0.78
   3 ?   -2.4   0.0       2.3   5.1e+03      16      26 ..     164     174 ..     146     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.8e-05
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgr 52
                R++ l  +++ +s +sq Ak  g+s+++  ++++ +++  ++ l dr  +g 
  CTQ27146.1 21 RIALLKQIDQTGS-ISQGAKHAGISYKSAWDAINEMNQLSEQPLVDRATGGK 71
                7888999999997.********************************877775 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
      HTH_29  22 lglsrrtvyrwlk 34 
                 +g +r++v+ +++
  CTQ27146.1 136 TGRDRQQVQQHVE 148
                 7999999998876 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.3
      HTH_29  16 sqiAkllglsr 26 
                 +q A+ lgl++
  CTQ27146.1 164 AQSAEKLGLDE 174
                 68888888886 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.8e-05      0.17       1      52 []      20      71 ..      20      72 .. 0.91
   2 ?   -3.5   0.0       5.2   1.2e+04      19      27 ..     167     175 ..     164     176 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.8e-05
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvprrrrpr 52
                +R+  +k++ + +s+++ A++ gis+ +  + i+  ++  ++ Lv+r  +++
  CTQ27146.1 20 RRIALLKQIDQTGSISQGAKHAGISYKSAWDAINEMNQLSEQPLVDRATGGK 71
                5888899999999***************************9*****997665 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.2
      HTH_28  19 Arelgisrr 27 
                 A++lg+++ 
  CTQ27146.1 167 AEKLGLDEG 175
                 999999876 PP

>> PEX-2N  Peroxisome biogenesis factor 1, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00012      0.27      58      79 ..     159     180 ..     119     184 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
                 EEEEEHHHHHHTT--TT-EEEE CS
      PEX-2N  58 eveinrqlgeklGlkdGeqvfL 79 
                 +v i+ q +eklGl +G++v++
  CTQ27146.1 159 NVAITAQSAEKLGLDEGQEVLV 180
                 7999***************974 PP

>> tRNA_anti_2  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00033      0.74      26      75 ..     133     181 ..     110     185 .. 0.83
   2 ?   -0.9   0.0      0.86   1.9e+03      24      54 ..     203     233 ..     193     253 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00033
  tRNA_anti_2  26 Geisnlkrka.sghvYftLkDekakisavifrsraaklkftledGmkVlvk 75 
                  G i+   r++ ++hv + L D k +++++i +++a+kl   l++G++Vlv 
   CTQ27146.1 133 GTITGRDRQQvQQHVEVLLADGKTRLNVAITAQSAEKLG--LDEGQEVLVL 181
                  777777665668999999****************99876..99*****996 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.86
  tRNA_anti_2  24 vrGeisnlkr.kasghvYftLkDekakisavi 54 
                  + G is ++  + +  v +tL D + ++ a++
   CTQ27146.1 203 LSGRISHIECgSGQCEVLMTLADGQ-TLCATL 233
                  6788888864222457788999866.344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2151.75
//
Query:       CTQ27147.1  [L=257]
Description: molybdate transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-50  171.6   7.5    2.5e-50  171.4   7.5    1.0  1  SBP_bac_11  Bacterial extracellular solute-binding protein
    1.5e-16   61.2   6.0    1.9e-16   60.9   6.0    1.1  1  SBP_bac_1   Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
       0.93    9.4   3.6        1.6    8.7   0.1    2.8  3  Chorion_1   Chorion protein


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.4   7.5   4.2e-54   2.5e-50       1     229 [.      29     254 ..      29     255 .. 0.95

  Alignments for each domain:
  == domain 1  score: 171.4 bits;  conditional E-value: 4.2e-54
                 .EEEE-SSTHHHHHHHHHHHHHHH---EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGGGG-EEEEEEEEEEEESTT-......TT-- CS
  SBP_bac_11   1 ltvaaagslaaalrelaaaFeahtgvkvevsaggsgklarqiadgarpDvwipassawlellaaaglvqaesavplassplviavpkgn......pkki 93 
                 +tv+aa+sl+ a++++a+a++++ +v+v+ s+++s++larqi++ga++D++i+a+++w++ +a++ +++++++++l ++ lv+++pk +       + +
  CTQ27147.1  29 VTVFAAASLTNAMQDIAQAYKKEKNVEVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAADKKAIDPATRATLLGNSLVVVAPKASaqgaitIDEK 127
                 69***************************************************************************************5543333578 PP

                 -SHHHHHHSS--EEEE--T-TTTTHH.HHHHGGG--HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEHHHHH..HSTTSSEEE.E--TTT--.. CS
  SBP_bac_11  94 kgwadLlkpglklavadPttspsGlaalalleaagaqellkalekkvvklgessrqlltaveageadagivyeseakaaengdkleav.ylpeglnldp 191
                 ++w +Llk g +lav dP++ p+G +a+++l+++g    +++l+ k +  +e++r +l+ ve++ea +givy s+a    +++++++v + pe  + + 
  CTQ27147.1 128 TDWTSLLKGG-RLAVGDPQHVPAGIYAKEALQKLG---AWETLSPKLA-PAEDVRGALALVERNEAPLGIVYGSDAV---ASKGVKVVgTFPEASH-QK 217
                 89*****976.9***********************...********99.8999***********************9...7***************.7* PP

                 .EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT- CS
  SBP_bac_11 192 ldypaavlkkaakreaAraFlafLrspeaqailrkyGf 229
                 ++yp+a++++  +++a  aF+++L++pea ai+++yGf
  CTQ27147.1 218 VEYPLAIVDGH-RNAAVSAFYDYLKGPEASAIFKRYGF 254
                 *********87.78899********************* PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   6.0   3.2e-20   1.9e-16       1     313 [.      34     245 ..      34     247 .. 0.92

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 3.2e-20
                 EGSHHHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHT CS
   SBP_bac_1   1 agsltegaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvl 98 
                 a+slt+  a+q ++ +a++k +++++V+  + +s++la     +i+aG+ paD++++ d  w++  a++++  p +  +   +  +v   +++      
  CTQ27147.1  34 AASLTN--AMQDIA-QAYKK-EKNVEVVSSFASSSTLAR----QIEAGA-PADLFISaDQKWMDYAADKKAIDPATRATLLGNSLVVVAPKAS------ 117
                 578999..99****.***99.78****************....******.88************99999888888888888877776655555...... PP

                 HHHHCEEEESEEEEEEEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHH CS
   SBP_bac_1  99 pkildskvlyvPlyaargliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaa 197
                                a+g i+         +d+++ W  l++ ++ ++++    ++g++ + a+++++++                             
  CTQ27147.1 118 ---------------AQGAIT---------IDEKTDWTSLLKGGRLAVGDPQHVPAGIYAKEALQKLGAWE---------------------------- 164
                 ...............445555.........5999***********************************98............................ PP

                 HHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCS CS
   SBP_bac_1 198 tylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgsk 296
                                l++k a+ +d++ alal+e+ ea+++iv++++a a++ v+  + f+++++++                    + y+lai+ g  
  CTQ27147.1 165 --------------TLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVGTFPEASHQK--------------------VEYPLAIVDGHR 229
                 ..............*****************************************************....................89********** PP

                 THHHHHHHHHHHTSHHH CS
   SBP_bac_1 297 npeaAkkFldfllspea 313
                 n +a+ +F d+l +pea
  CTQ27147.1 230 N-AAVSAFYDYLKGPEA 245
                 *.99***********98 PP

>> Chorion_1  Chorion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.16   9.5e+02      53     104 ..       7      58 ..       2      76 .. 0.60
   2 ?   -0.7   0.0       0.2   1.2e+03      71      88 ..     134     151 ..     116     162 .. 0.81
   3 ?    8.7   0.1   0.00027       1.6      71     114 ..     175     218 ..     150     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.16
   Chorion_1  53 rGfgGlgddiaaasalaaslGGtlavvsssaaPtGlgiasensyeGnvgvaG 104
                 rG++G+      a+   a+ G     +++s + +   ia   + e nv v+ 
  CTQ27147.1   7 RGVVGVSLTLCVAGQALAAEGKVTVFAAASLTNAMQDIAQAYKKEKNVEVVS 58 
                 5666666665555555555555444445666666666666666666666665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.2
   Chorion_1  71 slGGtlavvsssaaPtGl 88 
                  +GG lav  +   P+G+
  CTQ27147.1 134 LKGGRLAVGDPQHVPAGI 151
                 479999999999999997 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00027
   Chorion_1  71 slGGtlavvsssaaPtGlgiasensyeGnvgvaGnLPflgtadv 114
                  + G+la+v  + aP G+  +s  +   +v v+G +P ++  +v
  CTQ27147.1 175 DVRGALALVERNEAPLGIVYGSDAVASKGVKVVGTFPEASHQKV 218
                 46799********************************9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1845.03
//
Query:       CTQ27148.1  [L=229]
Description: molybdate transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-23   80.9  14.8    1.1e-22   80.6  14.8    1.1  1  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        2.6    8.7   4.2         22    5.7   0.1    2.6  3  Candida_ALS   Candida agglutinin-like (ALS)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6  14.8   1.3e-26   1.1e-22       2     183 ..      26     227 ..      25     229 .] 0.84

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 1.3e-26
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf............vilsilghlilpviillllsaapyvrlirraalrslpkdl 83 
                   +++Gi+     ++r ++++ ll+ +  ++l lP++v++ ll+++              +  ++ +++ +++++++++++p++++ +r al+ ++  l
    CTQ27148.1  26 LPFGIFFSwllVRRTFPGKALLDSILHLPLVLPPVVVGYLLLVAMgrrgfigswlydWFGISFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKL 122
                   799999999999****************************998889*********97555567789999**************************** PP

  BPD_transp_1  84 veaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis......nggvlalviavlllnlvadi 174
                   ++aar+lGasrw++f +++lP++lp ii g +laf+++lg++ ++ ++ s+   g +++ ++ +y + ++       + + l+++ + l+ +l++ +
    CTQ27148.1 123 EQAARTLGASRWRVFLTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNI-PGETRTLPSAMYTLIQTPggegaaARLCLIAIGLALVSLLISEW 218
                   ******************************************9988888776.34445544444444444477777655556666666677777888 PP

  BPD_transp_1 175 lqrlldprv 183
                   l+r+  +r+
    CTQ27148.1 219 LARVSRQRM 227
                   888887776 PP

>> Candida_ALS  Candida agglutinin-like (ALS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1    0.0086        77      14      27 ..     139     154 ..     134     156 .. 0.85
   2 ?    5.7   0.1    0.0024        22       9      26 ..     162     180 ..     160     181 .. 0.84
   3 ?   -2.6   0.1         1   9.1e+03      15      23 ..     186     194 ..     184     196 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0086
  Candida_ALS  14 TtTit.agPG.gTgTV 27 
                  T+T++ + PG   gTV
   CTQ27148.1 139 TITLPlTLPGiIVGTV 154
                  99*******9555888 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0024
  Candida_ALS   9 GstttTtT.itagPGgTgT 26 
                  G ++ T+T +++ PG+T T
   CTQ27148.1 162 GEFGATITfVSNIPGETRT 180
                  77889999666******88 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1
  Candida_ALS  15 tTitagPGg 23 
                  +T+  +PGg
   CTQ27148.1 186 YTLIQTPGG 194
                  577778885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1866.65
//
Query:       CTQ27149.1  [L=353]
Description: molybdate transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-30  105.5   0.0    4.9e-30  104.8   0.0    1.3  1  ABC_tran     ABC transporter
    2.1e-17   63.2   0.4      1e-16   60.9   0.1    2.3  2  TOBE         TOBE domain
    8.5e-05   22.5   1.3      0.046   13.5   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
     0.0018   18.2   0.1     0.0034   17.3   0.1    1.4  1  RsgA_GTPase  RsgA GTPase
     0.0021   17.8   0.0     0.0043   16.8   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
     0.0024   18.4   0.1      0.004   17.7   0.1    1.3  1  AAA_23       AAA domain
     0.0046   16.4   0.2      0.081   12.3   0.2    2.1  1  SMC_N        RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.014   15.7   0.4       0.47   10.7   0.1    2.5  2  AAA_22       AAA domain
       0.02   15.0   0.2      0.033   14.3   0.2    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
      0.031   14.7   0.2      0.061   13.7   0.2    1.7  1  AAA_16       AAA ATPase domain
        0.1   12.3   0.0       0.25   11.1   0.0    1.6  1  AAA_30       AAA domain
        0.1   12.6   0.1       0.18   11.9   0.1    1.4  1  Dynamin_N    Dynamin family
        0.2   11.9   0.0        5.8    7.2   0.0    2.5  1  SbcCD_C      Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   0.0   3.6e-33   4.9e-30       7     136 ..      21     157 ..      17     158 .. 0.95

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 3.6e-33
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHSTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren.......esdeeiekalsklgl 94 
                 +l ++ ++a++G +GaGK++L+++++gl++p++G+i l+g+ l++    + l   +++ig+++q+++lfp+++vr n        + ++++k+++ lg+
  CTQ27149.1  21 TLPASGITAVFGVSGAGKTSLINAISGLTRPQAGRIVLNGRVLNDtaqrICLAPEQRRIGYVFQDARLFPHYKVRGNlqygmakSMVSQFDKLVDLLGI 119
                 6788899**********************************9999998899999***************************99888899********** PP

                 GGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  95 kelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                   l d+        LSgG+kqrva+ rall++p+llllDEp 
  CTQ27149.1 120 APLLDRLP----GRLSGGEKQRVAIGRALLTAPELLLLDEPL 157
                 **999998....*****************************7 PP

>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.5     2e+03      26      35 ..     253     261 ..     233     283 .. 0.50
   2 !   60.9   0.1   7.5e-20     1e-16       1      62 [.     291     351 ..     291     353 .] 0.98

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.5
        TOBE  26 dlgggatLtA 35 
                 +lg++  L++
  CTQ27149.1 253 ALGDQL-LWV 261
                 444444.443 PP

  == domain 2  score: 60.9 bits;  conditional E-value: 7.5e-20
        TOBE   1 ssarNqlpgtVvvveplgseveVrvdlgggatLtArvtrrsaeeLgLapGeeVfalikaakv 62 
                 +s+rN+l+++V +  + +++ eV+++++g   L+Ar++++++++L++apG++Vfa+ik++++
  CTQ27149.1 291 TSIRNILRAEVAQCLEVNGQIEVQLRVSGRL-LWARISPWARDDLAIAPGQQVFAQIKSVSI 351
                 7******************************.***************************997 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.3e-05     0.046       1      24 [.      27      50 ..      27      86 .. 0.78
   2 !    8.0   0.4    0.0016       2.2     237     298 ..     130     189 ..     112     194 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.3e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                ++++ G  g+GK++L+ a+++l r
  CTQ27149.1 27 ITAVFGVSGAGKTSLINAISGLTR 50
                799*******************65 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0016
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv..iltTHS 298
                 lS G k+  a+  all a+    lll+DEp ++L+  + r+ll  l +l++  + +  + ++HS
  CTQ27149.1 130 LSGGEKQRVAIGRALLTAP---ELLLLDEPLASLDIPRKRELLPYLQRLAQ-EIHIpmLYVSHS 189
                 5666666666666777777...9*******************988865555.466665667776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   2.5e-06    0.0034      93     125 ..      18      51 ..       5      68 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.5e-06
                  HHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  93 lkellkd.ktsvlvGqSGvGKStLinallpelel 125
                  + e l    ++++ G SG+GK++Lina+ + ++ 
   CTQ27149.1  18 ICETLPAsGITAVFGVSGAGKTSLINAISGLTRP 51 
                  55555554899****************9986554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.1e-06    0.0043      21      53 ..      24      57 ..      14      61 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.1e-06
      AAA_29 21 lkgatlltGpsGsGKSTllDAiqalLvpak.kvr 53
                 +g+t + G sG+GK++l+ Ai+ l  p+  ++ 
  CTQ27149.1 24 ASGITAVFGVSGAGKTSLINAISGLTRPQAgRIV 57
                4589*******************99988875555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   2.9e-06     0.004      18      40 ..      24      46 ..       4      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.9e-06
      AAA_23 18 skgltlItGpNGaGKTTildAik 40
                 +g+t+++G  GaGKT++++Ai 
  CTQ27149.1 24 ASGITAVFGVSGAGKTSLINAIS 46
                579*******************7 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.2   5.9e-05     0.081      23     188 ..      24     177 ..      16     205 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.9e-05
                 TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
       SMC_N  23 sksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk. 120
                 ++++ta+ G  G+GK++l++Ai+          l + ++ +++ +   ++ ++     i +  e++++    ++  +  + k  g+ +y + ++ v++ 
  CTQ27149.1  24 ASGITAVFGVSGAGKTSLINAIS---------GLTRPQAGRIVLN---GRVLNDTAQRICLAPEQRRIGYVFQDARLFPHYKVRGNLQYGMAKSMVSQf 110
                 5689******************2.........3556667777776...455555555566667777766667777777777777777888877777765 PP

                 HHHHHHHHCTT-STT...CS-HHHHHHHHH..HHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCT CS
                 xxxxxxxxxxxxxxx...xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 kevsellesagiske...lLSgGektLval..aLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksk 188
                  ++ +ll  a +       LSgGek+ va+  aLl          l llDe  a LD  + +++  +l++  +
  CTQ27149.1 111 DKLVDLLGIAPLLDRlpgRLSGGEKQRVAIgrALL------TAPELLLLDEPLASLDIPRKRELLPYLQRLAQ 177
                 77777776666543322278888887776622333......22336777888888887777777777776665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00034      0.47       6      25 ..      26      45 ..      24      72 .. 0.89
   2 ?    2.5   0.0      0.12   1.6e+02      74     103 ..     164     196 ..     128     208 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00034
      AAA_22  6 gilvvtGesGtGKTtllrrl 25
                gi++v+G sG+GKT l++ +
  CTQ27149.1 26 GITAVFGVSGAGKTSLINAI 45
                899*************9875 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.12
      AAA_22  74 sseellealeqalrarav...ielliiDEaqhl 103
                 +++ell +l++ +++ +     +   +DE+qhl
  CTQ27149.1 164 RKRELLPYLQRLAQEIHIpmlYVSHSLDEIQHL 196
                 334444444444444444222444557888887 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   2.4e-05     0.033       3      22 ..      29      48 ..      27     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-05
                EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge 22
                a++G + +GK++Lina++g 
  CTQ27149.1 29 AVFGVSGAGKTSLINAISGL 48
                89***************983 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   4.4e-05     0.061      25      59 ..      26      61 ..      13     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.4e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekd..ggiflrgk 59
                +++ + G sG GK+sl++++   l++   g i+l+g+
  CTQ27149.1 26 GITAVFGVSGAGKTSLINAIS-GLTRPqaGRIVLNGR 61
                7899***************99.455553545555555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00018      0.25      12      50 ..      21      57 ..      12      83 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00018
      AAA_30 12 alltsgdrvavltGpAGtGKttalkalreaweaaggrvi 50
                +l +sg  ++++ G+ G+GKt +++a+  + + + gr++
  CTQ27149.1 21 TLPASG--ITAVFGVSGAGKTSLINAISGLTRPQAGRIV 57
                555555..8999***************999998855554 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00013      0.18       2      21 ..      29      48 ..      28      64 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                EEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N  2 avvGsqSsGKSSvlnaLlge 21
                av+G   +GK+S++na+ g 
  CTQ27149.1 29 AVFGVSGAGKTSLINAISGL 48
                7****************996 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0042       5.8      62      88 ..     146     172 ..     120     174 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0042
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllell 88 
                 +a++l++LDE  ++lD  + ++ll +l
  CTQ27149.1 146 TAPELLLLDEPLASLDIPRKRELLPYL 172
                 468899999999999998888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2815.81
//
Query:       CTQ27150.1  [L=272]
Description: putative phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-61  207.3   0.0    3.7e-61  207.1   0.0    1.0  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
      4e-13   49.5   0.1    1.5e-06   28.0   0.1    2.2  2  S6PP             Sucrose-6F-phosphate phosphohydrolase
      2e-12   47.9   0.2    5.6e-12   46.4   0.2    2.1  1  Hydrolase        haloacid dehalogenase-like hydrolase
      1e-08   35.8   4.8     0.0018   18.7   0.1    3.4  3  HAD              haloacid dehalogenase-like hydrolase
     0.0003   20.8   0.0    0.00095   19.2   0.0    1.9  1  Hydrolase_6      Haloacid dehalogenase-like hydrolase
     0.0077   16.3   0.1         10    6.1   0.0    3.1  3  HAD_2            Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.019   14.5   1.0        9.5    5.7   0.0    3.1  3  Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosph


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.1   0.0   1.4e-64   3.7e-61       1     255 []       6     267 ..       6     267 .. 0.99

  Alignments for each domain:
  == domain 1  score: 207.1 bits;  conditional E-value: 1.4e-64
                  EEEEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEE.ECTTTEEEEE--B-HHHHHHHHHHHHHTTCE CS
  Hydrolase_3   1 ialDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGali.ddekgkilykstiskedvkeiikllkennve 97 
                  ialDlDGTLl+s+k+i + + ea+++++e+g++v++ TGR+++a++p++++l ld+p+i++NG++  d++ +k+l++++++ e++ ++ + l +++++
   CTQ27150.1   6 IALDLDGTLLTSKKTILPASLEALARAREAGYQVIVVTGRHHVAIHPFYQALALDTPAICCNGTYLyDYHAKKVLAADPMPVEQAVSLTAMLAKQQIH 103
                  89************************************************************************************************ PP

                  EEEEESSEEEESTT........THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEE.EES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-S CS
  Hydrolase_3  98 illytedkvyvlnk.......eksekkkkeeektkkkkeeidseeeledeeiakil.ilkdkekldelekelksklnklltitssskgyleimpkgvs 187
                   l y +d ++++++       +++ +   e++   + + ++  ++ +e + ++k+  +++d  +l+++++++ + l+   ++  s++  ++i ++g s
   CTQ27150.1 104 GLAYVDDAMLYEHPtghvirtRNWAQALPEDQRPVFAQVDSLAQAVREVNAVWKFAlTDDDIPRLQRFAQQVGETLGL--ECEWSWHDQVDIARAGNS 199
                  ********************************************************99******************87..9***************** PP

                  HHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 188 KgtalkklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVakal 255
                  Kg+ l +++   ++s+++v+afGD+ ND++MLeaag+gvAmgna +evk+ A+ v+++n++ ++a+++
   CTQ27150.1 200 KGKRLAQWVADQGLSMQDVVAFGDNYNDLSMLEAAGTGVAMGNAVDEVKARANIVIGDNESTSIAEFI 267
                  *****************************************************************998 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     2e-07    0.0005       3      74 ..       4      73 ..       2      82 .. 0.81
   2 !   28.0   0.1   5.7e-10   1.5e-06     122     214 ..     158     247 ..     119     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2e-07
                EEEEE-TBTTTB.S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHHHHHHHHT----SEEEETTTTEEEE CS
        S6PP  3 lllvsdLDntlvdgdnealarlnelleaeerkdvllvfaTGRsldsakellkeknllkPdvlitsvGteiyy 74
                ++++ dLD+tl+++++  l +  e l  +++   +++++TGR+  +    ++   l +P +  +  Gt +y+
  CTQ27150.1  4 RVIALDLDGTLLTSKKTILPASLEALARAREAGYQVIVVTGRHHVAIHPFYQALALDTPAI--CCNGTYLYD 73
                799*********77777776555555559999***************************64..556777766 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 5.7e-10
                 EEE-TTS-THHHHHHHHHHHTTTS-EEEEEETTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE-TT--HHHH CS
        S6PP 122 yfvdkekaaevlkeleqlLekreldvkviyssgkdlDvlPkraskgeAlryLakkleleleqilvcGdsgnDeellignvlgVvVgnaqeell 214
                 + +++++ ++ l+   q+   + l  ++ +s++ ++D+   + skg+ l+ +    +l ++ ++  Gd  nD ++l++   gV +gna  e +
  CTQ27150.1 158 FALTDDDIPR-LQRFAQQ-VGETLGLECEWSWHDQVDIARAGNSKGKRLAQWVADQGLSMQDVVAFGDNYNDLSMLEAAGTGVAMGNAVDE-V 247
                 5566666666.5555554.34556777779**********************************************************999.3 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.2   2.2e-15   5.6e-12       2     210 .]       4     235 ..       3     235 .. 0.70

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 2.2e-15
                 SEEEEESBTTTBCHH.....HHHHHHHHHHCHHHHHHHHHH........HHCHHHHHHHHHHHHH...HHHHHHHHHETTTE............HHHHT CS
                 xxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx............xxxxx RF
   Hydrolase   2 ktvvfDkdGTLttge.....psvedvivsaalalaaaletg........sehpigkalvaaakar...sgaltgfatfigrg............ayaig 72 
                 +++++D+dGTL+t++      s+e + + ++   ++             + hp+ +al+    a+   +  l ++++   +             +    
  CTQ27150.1   4 RVIALDLDGTLLTSKktilpASLEALARAREAGYQV----IvvtgrhhvAIHPFYQALALDTPAIccnGTYLYDYHA---KKvlaadpmpveqaV---- 91 
                 689*********999644433333333333333333....2446699*9*********9999999665333344444...333334433332220.... PP

                 HHHHHHHH....HCHHHHHHHHHHHHHHCHHHHHH.............TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTE.EEEEEESSEHHHHHHHHH CS
                 xxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
   Hydrolase  73 kpewltal....dippdlgaaigsaqsqgrtvall.............qaralavftiadplkvkpeaaeavasLkaagi.evvlltgdnpetaeraan 153
                     lta+     i+                   +               r  a    +d+++v+  +  + ++ ++ +    + lt d+    +r a+
  CTQ27150.1  92 ---SLTAMlakqQIHGLAYV--------------DdamlyehptghviRTRNWAQALPEDQRPVFAQVDSLAQAVREVNAvWKFALTDDDIPRLQRFAQ 173
                 ...22222222222222222..............23444444444444358888888888888****999999999997757999************** PP

                 HTT....GGGE.SEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxx....xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 154 qlG....ddyf.daviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 q+G     ++  + ++++di   +  + + + + +   + + ++v+++GD+ nD+++l+aAg
  CTQ27150.1 174 QVGetlgLECEwSWHDQVDIARAGNSKGKRLAQWVADQGLSMQDVVAFGDNYNDLSMLEAAG 235
                 ******9555549999999999***************************************8 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.4     0.051   1.3e+02       2      12 ..       7      17 ..       6      22 .. 0.80
   2 !   18.7   0.1     7e-07    0.0018      85     130 ..      20      61 ..      16     105 .. 0.79
   3 !   15.4   0.0   7.4e-06     0.019     146     188 .]     196     232 ..     166     232 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.051
         HAD  2 lfDfDgTLldg 12
                 +D+DgTLl++
  CTQ27150.1  7 ALDLDGTLLTS 17
                68******998 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 7e-07
         HAD  85 lldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlat 130
                 ++ p  le+la++r+aG++v+vv+g +   ++p+ ++l     l+t
  CTQ27150.1  20 TILPASLEALARAREAGYQVIVVTGRHHVAIHPFYQALA----LDT 61 
                 455999*****************************9888....554 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 7.4e-06
         HAD 146 gkpvrgegkvaalrewlaaegegidleevvayGDspsDlpllr 188
                  ++++g    ++l++w a++g   +   vva+GD ++Dl +l+
  CTQ27150.1 196 AGNSKG----KRLAQWVADQGLSMQD--VVAFGDNYNDLSMLE 232
                 445555....9999999999988876..*************96 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.7e-07   0.00095       1      40 [.       6      46 ..       6      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.7e-07
                 EEEESTTTSEETTE.E-TTHHHHHHHHHHTT-EEEEEE--- CS
  Hydrolase_6  1 flfDidGvLwrgdk.aipgaaealnalraagkpvvllTNns 40
                 +++D+dG+L+  +k ++p + eal + r+ag++v+++T + 
   CTQ27150.1  6 IALDLDGTLLTSKKtILPASLEALARAREAGYQVIVVTGRH 46
                 579*******9666279*********************655 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.013        34       3      24 ..       8      29 ..       6      31 .. 0.82
   2 ?    3.8   0.0     0.021        54      81     118 ..      22      59 ..      18      62 .. 0.84
   3 !    6.1   0.0     0.004        10     141     176 ..     204     239 ..     194     240 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.013
       HAD_2  3 FDlDgTlldteeliiqafnell 24
                 DlDgTll ++++i+ a  e+l
  CTQ27150.1  8 LDLDGTLLTSKKTILPASLEAL 29
                6***********9998776665 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.021
       HAD_2  81 ydgvkelLeeLkeagyklgivTsksreaveekleqlgi 118
                 ++   e+L   +eagy++ +vT +++ a+  + ++l +
  CTQ27150.1  22 LPASLEALARAREAGYQVIVVTGRHHVAIHPFYQALAL 59 
                 56778999999*************99999888877765 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.004
       HAD_2 141 iekaleklklkkeeviyvGDsptDieaakkagikvi 176
                 +++++  ++l+ ++v+ +GD+ +D+    +ag+ v+
  CTQ27150.1 204 LAQWVADQGLSMQDVVAFGDNYNDLSMLEAAGTGVA 239
                 566778899*****************9999998765 PP

>> Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosphatase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.082   2.1e+02      74      87 ..       4      17 ..       2      21 .. 0.85
   2 ?    5.7   0.0    0.0037       9.5     116     142 ..      20      46 ..      16      56 .. 0.89
   3 ?    4.7   0.0    0.0077        20     179     208 ..     198     230 ..     187     244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.082
                     EEEEE--BTTTEEH CS
  Acid_phosphat_B 74 davvfDiDeTvLsn 87
                     +++ +D+D T+L++
       CTQ27150.1  4 RVIALDLDGTLLTS 17
                     6899********75 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0037
                      CCECCHHHHHHHHHHTTEEEEEEEEEE CS
  Acid_phosphat_B 116 kaipgalelikkvverGvkiffvsgRs 142
                      + +p +le ++ ++e G++++ v+gR 
       CTQ27150.1  20 TILPASLEALARAREAGYQVIVVTGRH 46 
                      568999********************7 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0077
                      HHHHHH.HHHHHHTTEEE..EEEEESSGGGCHC CS
  Acid_phosphat_B 179 syKeer.rqklekkGyni..vlniGDnlsDlng 208
                      ++K +r  q++ ++G  +  v+ +GDn +Dl+ 
       CTQ27150.1 198 NSKGKRlAQWVADQGLSMqdVVAFGDNYNDLSM 230
                      55655525789999999988899*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2042.38
//
Query:       CTQ27151.1  [L=331]
Description: 6-phosphogluconolactonase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-86  291.0   0.0    1.7e-86  290.6   0.0    1.1  1  Lactonase     Lactonase, 7-bladed beta-propeller
    1.5e-05   24.8   0.0      0.003   17.2   0.0    2.7  2  SGL           SMP-30/Gluconolactonase/LRE-like region
     0.0051   17.0   0.0         21    5.4   0.0    4.5  6  Arylesterase  Arylesterase


Domain annotation for each model (and alignments):
>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.6   0.0   2.8e-90   1.7e-86       7     343 ..       6     327 ..       3     328 .. 0.95

  Alignments for each domain:
  == domain 1  score: 290.6 bits;  conditional E-value: 2.8e-90
                 GGS.SS.TEEEEEEEETTTS-EEEEEEEEESS---SEEE-TTSSEEEEEET.STTTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE-TTSSEEEEEE CS
   Lactonase   7 ytk.geskgiytlkldtetgkltplelvaelenPsyLalspdgktlYavnetgeeggvsafaidkdsgeltllnkvssegaspchlsvdedgkllavAn 104
                 yt   es++i++++l +++gklt ++ v++ ++++++++sp++++lY+  +  +e +v a++i +d+g+lt+ +++   ++sp+h+s+d+ g+++++A+
  CTQ27151.1   6 YTAsPESQQIHVWSL-EADGKLTLVQVVDAPGQVQPMVVSPNKEFLYVGVR--PEFRVLAYRITPDNGALTFAGEAA-LPGSPTHISTDHHGRFVFSAS 100
                 5555789********.*********************************99..8********************999.9******************** PP

                 TTTTEEEEEEB.TTSEBESECEEEE.....SSTTT-SSTTEEEEEE-TTSSEEEEEETTTTEEEEEEE.-TTS-EEE..EEEEE-STT--EEEEEE-TT CS
   Lactonase 105 YsggsvsvfpldadgslkeasqvlkhegsgpnperqesphaHsvvldpdgkfllvpDLGtDrvrvykldkatgklte..pasvklppgsGPRHlaFhpd 201
                 Y++g+vsv pl++ g ++e+ +v++             + +Hs++++pd++ l+vp L  Dr+ +++l++++  l++  pa+v++ +g+GPRH++Fhp+
  CTQ27151.1 101 YNQGCVSVTPLHD-GLPGETITVVE-----------GLEGCHSANISPDNRTLWVPALKQDRICLFTLSDDG-FLSAqePAEVTTVEGAGPRHMVFHPN 186
                 ***********75.******99993...........4567****************************8888.466667******************** PP

                 SSEEEEEETTTTEEEEEEEE-TTTEEEEEEEEESS-TSS-S---EEEEEE-TTSSEEEEEETSSTEEEEEEE-TTT--EEEEEEEE-SSS.--EEEE-T CS
   Lactonase 202 gkiaYvvnELsstvsvfsydeatgaleelqtvstlpegftgknsaaeIrlspdgkflyvSnRgadsiavfavdeadgtltlveevstegkfPRdfaldp 300
                 +++ Y+vnEL+s+++v+++++ +g++e++qt++++p++f+g ++aa+I+++pdg++ly+++R+a+ i+vf+v+e+++ l+  ++++te++ PR f+ld+
  CTQ27151.1 187 QQYGYCVNELNSSIDVWELKDPKGNIECVQTLDMMPPDFSGVRWAADIHITPDGRHLYACDRTASIITVFSVSEDGSVLAVEGYQPTETQ-PRGFNLDH 284
                 ************************************************************************999999999999999887.******** PP

                 TSSEEEEEETTTTEEEEEEEETTTTEEEEESEEEESSSEEEEE CS
   Lactonase 301 sgklllvanqksdnvtvferdaetGkLtelgkdievgepvcvk 343
                 sgk+l++a+qks++++v+ +  e+G L+e g+++ ++ p++v+
  CTQ27151.1 285 SGKYLIAAGQKSHHIAVYDIVGEQGLLQEKGRYAVGQGPMWVV 327
                 *****************************************97 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0041        25      37     166 ..      32     159 ..       2     178 .. 0.48
   2 !   17.2   0.0     5e-07     0.003     139     215 ..     234     307 ..     225     310 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0041
         SGL  37 ldtpe.svGaiaprkd.grlvvasksglall....dlasgeletladeeedekpllrfNDgvvdpdGrlwfGtmgdeeakgeevgalyrldpdgklerv 129
                 +d+p+    +++  ++ + l+v+++ ++++l     +++g+l+   +         ++  +  d +Gr++f    ++ + +   + l    p+ ++  v
  CTQ27151.1  32 VDAPGqVQPMVVS-PNkEFLYVGVRPEFRVLayriTPDNGALTFAGEA----ALPGSPTHISTDHHGRFVFSASYNQGCVSV--TPLHDGLPG-ETITV 122
                 3333321112222.2224455555555555433323344433333332....233455555566666666655555554444..344433333.55555 PP

         SGL 130 lddltipNGlawspdgktlYlaDsltrkiwaydvdae 166
                 +++l      ++spd++tl +    +++i  + ++++
  CTQ27151.1 123 VEGLEGCHSANISPDNRTLWVPALKQDRICLFTLSDD 159
                 5666666666666666666666666666666666555 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 5e-07
         SGL 139 lawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkgegepDGlavDaeGnvwvAvw.gggkvvrfdpdGk 215
                 ++++pdg++lY +D ++  i++++v+++g+ + + +  ++ +++  +p G+ +D +G++ +A   ++++++++d  G+
  CTQ27151.1 234 IHITPDGRHLYACDRTASIITVFSVSEDGS-VLAVEG-YQPTET--QPRGFNLDHSGKYLIAAGqKSHHIAVYDIVGE 307
                 789***********************9999.555553.444444..499******88877776637789999987665 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.54   3.2e+03      65      82 ..       2      19 ..       1      23 [. 0.81
   2 ?   -1.5   0.0      0.51     3e+03      59      71 ..      41      53 ..      30      64 .. 0.86
   3 ?   -1.2   0.0      0.39   2.4e+03      55      73 ..      83     101 ..      78     109 .. 0.87
   4 !    5.4   0.0    0.0034        21      43      78 ..     116     151 ..     115     159 .. 0.88
   5 !    4.2   0.0    0.0082        49      51      84 ..     226     259 ..     223     261 .. 0.88
   6 ?   -0.6   0.0      0.25   1.5e+03      55      82 ..     276     303 ..     273     305 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.54
  Arylesterase 65 kkyiyvadilresihvmk 82
                  k+ +y a+   ++ihv  
    CTQ27151.1  2 KQTVYTASPESQQIHVWS 19
                  678999999999999976 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.51
  Arylesterase 59 Inidadkkyiyva 71
                  ++++++k ++yv+
    CTQ27151.1 41 MVVSPNKEFLYVG 53
                  579999*****97 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.39
  Arylesterase  55 sanGInidadkkyiyvadi 73 
                   s++ I  d + ++++ a+ 
    CTQ27151.1  83 SPTHISTDHHGRFVFSASY 101
                   79999*********99885 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0034
  Arylesterase  43 psevkvvasglssanGInidadkkyiyvadilresi 78 
                   p+e ++v++gl+     ni++d++ ++v  + ++ i
    CTQ27151.1 116 PGETITVVEGLEGCHSANISPDNRTLWVPALKQDRI 151
                   78999***********************98877777 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.0082
  Arylesterase  51 sglssanGInidadkkyiyvadilresihvmkkh 84 
                   sg+  a  I i +d + +y  d ++  i v+ + 
    CTQ27151.1 226 SGVRWAADIHITPDGRHLYACDRTASIITVFSVS 259
                   68889999*****************999888776 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 0.25
  Arylesterase  55 sanGInidadkkyiyvadilresihvmk 82 
                    + G n+d   ky+  a    ++i v++
    CTQ27151.1 276 QPRGFNLDHSGKYLIAAGQKSHHIAVYD 303
                   5889**********99999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2494.67
//
Query:       CTQ27152.1  [L=88]
Description: hypothetical protein CH1034_160140 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-23   81.1   1.3    5.6e-23   80.5   1.3    1.3  1  YmgB      Biofilm development protein YmgB/AriR


Domain annotation for each model (and alignments):
>> YmgB  Biofilm development protein YmgB/AriR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   1.3   3.1e-27   5.6e-23       2      59 .]      30      87 ..      29      87 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 3.1e-27
                HHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHH-X CS
        YmgB  2 EtevLgaiireilasggkvtnKaIIlkLiekLEsesdvvqldvyRqaLElVVgkTpDD 59
                E++v++ +i+ il+s+g+++nKaIIl Li+ LE+++dvv +dv+R++LE+VVg T DD
  CTQ27152.1 30 ESAVMSLAINSILQSEGHLNNKAIILWLIQALETTDDVVTADVIRKTLEIVVGYTMDD 87
                999******************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.27s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 657.35
//
Query:       CTQ27153.1  [L=101]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   11.4   0.0       0.17   11.4   0.0    1.1  1  DUF3598   Domain of unknown function (DUF3598)


Domain annotation for each model (and alignments):
>> DUF3598  Domain of unknown function (DUF3598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.4e-06      0.17     109     168 ..      36      97 ..      20     101 .] 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.4e-06
                 EEEEEEEE-TTS-EEEEE..EEEEEETTS.---------HHHC-EEEEEEEEEEETT----EE CS
     DUF3598 109 RlrlvqlYdkdgnLeklt..lIrEklagt.pakerppltveqllGkWqgeavtiypDlrspet 168
                 Rlrl+q+ + d +  k++  +I+E  a++  + +++pl+v++++G+W+  + ++ pD+  +e+
  CTQ27153.1  36 RLRLMQATEPDRQRRKIIaaVIEEICAKLiRQRKYAPLQVKKINGRWET-RGSLAPDSMPSEA 97 
                 8888888888888888753379999988778899*************95.6688888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 743.21
//
Query:       CTQ27154.1  [L=81]
Description: hypothetical protein CH1034_160142 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-05   22.3   0.0    0.00012   21.8   0.0    1.2  1  YmgB        Biofilm development protein YmgB/AriR
  ------ inclusion threshold ------
      0.047   13.8   0.0      0.083   13.1   0.0    1.4  2  Stork_head  Winged helix Storkhead-box1 domain


Domain annotation for each model (and alignments):
>> YmgB  Biofilm development protein YmgB/AriR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.3e-08   0.00012       2      35 ..      26      59 ..      25      66 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.3e-08
                HHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHT CS
        YmgB  2 EtevLgaiireilasggkvtnKaIIlkLiekLEs 35
                 +e Lg+i+ +il++g++++ Ka+  kL+++L+ 
  CTQ27154.1 26 QQETLGQIVMDILNEGRHLNRKALCTKLLSRLDR 59
                6899***************************985 PP

>> Stork_head  Winged helix Storkhead-box1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.28   2.5e+03      37      52 ..      12      27 ..       6      28 .. 0.76
   2 ?   13.1   0.0   9.2e-06     0.083      13      64 ..      27      78 ..      14      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.28
  Stork_head 37 eaLkkaypeiqiPsee 52
                +a+++ +++   Ps++
  CTQ27154.1 12 NAIAQYFNKASLPSQQ 27
                6778888888888875 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 9.2e-06
  Stork_head 13 eEvlcqvisdlnsaeqsatletlveaLkkaypeiqiPseeviydaLgsLike 64
                +E l q+++d+ +++++ + ++l+ +L ++ +    P+ee+ y++L  L+ +
  CTQ27154.1 27 QETLGQIVMDILNEGRHLNRKALCTKLLSRLDRARAPEEESHYQTLIGLLFA 78
                58999*****************************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 606.30
//
Query:       CTQ27155.1  [L=403]
Description: putative cyclic-di-GMP phosphodiesterase; blue-light sensing protein using FAD (BLUF) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-45  154.9   0.0    3.7e-45  154.3   0.0    1.2  1  EAL       EAL domain
    4.6e-25   87.6   0.0    7.9e-25   86.8   0.0    1.4  1  BLUF      Sensors of blue-light using FAD
  ------ inclusion threshold ------
      0.055   13.5   0.2       0.46   10.5   0.0    2.3  2  COX5A     Cytochrome c oxidase subunit Va


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.3   0.0   6.2e-49   3.7e-45      14     236 ..     173     387 ..     166     389 .. 0.91

  Alignments for each domain:
  == domain 1  score: 154.3 bits;  conditional E-value: 6.2e-49
                 EEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--C.HHCC-CCHHHHHHHHHH CS
         EAL  14 alyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlsp.asladeefleelrellk 111
                 ++++QP+vd    +++ +eallr   pdg+  sp+++++ ++  + ++  d++  + al+ + +l   + +++ lsinl p + ++ + +++ l+++++
  CTQ27155.1 173 SFAFQPIVDPFACEIISWEALLRT--PDGQ--SPGAYFAGLTG-DDIYLADLHSKRVALSLAGKL---GLRNKALSINLLPmTMVKAPNAVAFLLDEIS 263
                 689*******9***********98..5554..79999998888.666666666666666655665...378999*******9****************8 PP

                 CCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHHCCCT-EEEE CS
         EAL 112 qsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalialakelgikvva 210
                 ++ + p+++++e+te+e+++r+++ + +++++L+ +Gi++a+d+fg+g++ ls+la ++pd+iK+d +l++++++d+ +q++v+a+i+++ +l+i v a
  CTQ27155.1 264 RNDLIPEQIIVEFTEREVISRMDDFT-DAVRKLKGAGINLAIDHFGAGFAGLSLLAQYQPDRIKIDHELIRNIHQDGPRQSIVQAIIKCCTSLEIAVSA 361
                 88888888*****************9.************************************************************************ PP

                 -S--SHHHHHHHHHHT-SEE-STTT- CS
         EAL 211 egVeteeqlealrelgcdlvQGylls 236
                  gVe  e++++l+++g+  +QG+l++
  CTQ27155.1 362 VGVERAEEWMWLESAGISQFQGNLFA 387
                 ************************98 PP

>> BLUF  Sensors of blue-light using FAD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   1.3e-28   7.9e-25       1      91 [.       2      92 ..       2      93 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 1.3e-28
                EEEEEEEEEE.TTS-HHHHHHHHHHHHHHHHHHTEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHT-TTEEEEEEEEEEEESS-SSTTCSS CS
        BLUF  1 LvrliYvSkaaeelseeeleeileesrenNkelgitGvLlydegvflQvLEGeeeaveelyerIkkDpRhkdvevleeeeieersFskwsm 91
                L+++iY+S+ ++++s +++e+++++++e+N ++++tG+Ll+++++f+Q++EG+ee+v+++y++I++DpRh +++ l ++ + +r+F k+ m
  CTQ27155.1  2 LTTIIYRSHICDNVSFKSIEAMVARANERNGQADVTGILLFNGTHFFQLIEGPEEKVQDIYQHICQDPRHYNLVELLCDYAPSRRFGKVGM 92
                6799****99*****************************************************************************9998 PP

>> COX5A  Cytochrome c oxidase subunit Va
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.8e-05      0.46      30      66 ..     259     296 ..     253     302 .. 0.88
   2 ?   -0.2   0.0      0.17     1e+03      22      56 ..     323     356 ..     314     366 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.8e-05
       COX5A  30 lnnlfayDlvPepkvieaalrac.rrvndfalavRilE 66 
                 l+++   Dl+Pe+ ++e + r    r++df+ avR l 
  CTQ27155.1 259 LDEISRNDLIPEQIIVEFTEREViSRMDDFTDAVRKLK 296
                 789999***********99887659**********886 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.17
       COX5A  22 DlfelrrglnnlfayDlvPepkvieaalracrrvn 56 
                 D+ ++ + l   +++D  P +++++a ++ c  ++
  CTQ27155.1 323 DRIKIDHELIRNIHQDG-PRQSIVQAIIKCCTSLE 356
                 55666666666666664.99999999999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3066.87
//
Query:       CTQ27156.1  [L=244]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-20   71.7   0.1    1.1e-19   70.2   0.0    1.8  2  MerR_1       MerR HTH family regulatory protein
    7.1e-14   51.3   0.0    1.7e-13   50.0   0.0    1.7  1  MerR         MerR family regulatory protein
    6.3e-06   26.3   0.3    4.4e-05   23.6   0.0    2.2  2  HTH_17       Helix-turn-helix domain
    0.00048   20.4   0.8     0.0018   18.5   0.0    2.4  3  HTH_Tnp_1    Transposase
     0.0042   16.9   0.0      0.017   15.0   0.0    2.0  1  Terminase_5  Putative ATPase subunit of terminase (gpP-like)
     0.0053   16.6   0.0      0.013   15.3   0.0    1.6  1  MerR_2       MerR HTH family regulatory protein
     0.0055   16.8   0.4       0.02   15.0   0.0    2.1  2  HTH_28       Helix-turn-helix domain
  ------ inclusion threshold ------
      0.013   15.3   2.1      0.016   15.0   0.0    2.3  3  HTH_23       Homeodomain-like domain
       0.17   11.8   0.6        1.5    8.8   0.1    2.4  2  DUF3926      Protein of unknown function (DUF3926)


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   5.7e-23   1.1e-19       1      67 [.       4      71 ..       4      73 .. 0.98
   2 ?   -1.8   0.0       1.7   3.4e+03      50      59 ..     229     238 ..     223     239 .. 0.61

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 5.7e-23
                EEHHHHHHHHTS-HHHHHHHHHHTT.-S-EE-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XXX CS
      MerR_1  1 ysigevakilgvtthtlrywekegl.lkpkrteggrryYtdedierLklikyLlkrGltlkgikklln 67
                ysigeva+++g+++ tlr w++++  lkp r+egg+r +++edi r++ ik++ +rG+++ ++k ll+
  CTQ27156.1  4 YSIGEVAERCGINPVTLRAWQRRYGlLKPQRSEGGHRQFDEEDILRIEEIKRWIERGVSVGKVKALLE 71
                9***********************99***************************************997 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.7
                 HHHHHTT--G CS
      MerR_1  50 kyLlkrGltl 59 
                  +++++G+++
  CTQ27156.1 229 SHWQEQGFSI 238
                 4566666665 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   8.8e-17   1.7e-13       1      38 []       5      42 ..       5      42 .. 0.96

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 8.8e-17
                EHHHHHHHHTTTHHHHHHHHHT.TSSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEre.GLipppeRtegGyRlY 38
                +IgevAe++G+ p tLR + r+ GL+ +p+R+egG+R +
  CTQ27156.1  5 SIGEVAERCGINPVTLRAWQRRyGLL-KPQRSEGGHRQF 42
                7*********************88**.**********76 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   2.2e-08   4.4e-05       1      45 [.       3      49 ..       3      52 .. 0.89
   2 ?    0.8   0.1      0.29   5.7e+02      40      50 ..      50      60 ..      48      61 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.2e-08
      HTH_17  1 lltveEaAelLgvsrstvyrli.rrgelpaak.iGrrwriprsdlee 45
                ++++ E+Ae  g+ + t++ +  r g l++ +  G+++ ++++d+ +
  CTQ27156.1  3 FYSIGEVAERCGINPVTLRAWQrRYGLLKPQRsEGGHRQFDEEDILR 49
                69*****************76515679****99************87 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.29
      HTH_17 40 rsdleewlekr 50
                 +++ +w+e++
  CTQ27156.1 50 IEEIKRWIERG 60
                58999999985 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   9.1e-07    0.0018      24      54 ..       4      32 ..       1      57 [. 0.79
   2 ?   -1.5   0.0       1.6   3.1e+03       4      27 ..      39      64 ..      36      66 .. 0.73
   3 ?   -2.3   0.1         3   5.9e+03      35      46 ..     223     234 ..     222     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.1e-07
   HTH_Tnp_1 24 ksvsevArrhgvspnqLykWrrqyregeeas 54
                +s+ evA+r g++p +L++W r y  g++++
  CTQ27156.1  4 YSIGEVAERCGINPVTLRAWQRRY--GLLKP 32
                7899*******************9..54444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.6
   HTH_Tnp_1  4 rrrwsdefKari..Vreslepgksvs 27
                 r +++e ++ri  +++  e g+sv 
  CTQ27156.1 39 HRQFDEEDILRIeeIKRWIERGVSVG 64
                58888888888766777788888876 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3
   HTH_Tnp_1  35 vspnqLykWrrq 46 
                 ++++ L++W  q
  CTQ27156.1 223 LQEELLSHWQEQ 234
                 57899****865 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.5e-06     0.017      14      38 ..       4      28 ..       3      34 .. 0.96

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.5e-06
  Terminase_5 14 yrvaeIAeelglkeatVysWkkrde 38
                 y++ e+Ae +g+++ t  +W +r++
   CTQ27156.1  4 YSIGEVAERCGINPVTLRAWQRRYG 28
                 8999********************7 PP

>> MerR_2  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.5e-06     0.013       2      51 ..       5      56 ..       4      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.5e-06
      MerR_2  2 tieelcertgieeeflieLv.elgliepeiee.eewyfdesqlarlekavRL 51
                +i e+ er+gi++  l  ++  +gl++p+++e   ++fde+++ r+e + R+
  CTQ27156.1  5 SIGEVAERCGINPVTLRAWQrRYGLLKPQRSEgGHRQFDEEDILRIEEIKRW 56
                67899**************8459*****999957888**********99986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     1e-05      0.02      14      36 ..       5      27 ..       3      35 .. 0.93
   2 ?   -2.6   0.1       3.3   6.5e+03      33      39 ..      53      59 ..      52      65 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1e-05
      HTH_28 14 svreaArelgisrrtvyrWikry 36
                s+ e+A++ gi++ t++ W +ry
  CTQ27156.1  5 SIGEVAERCGINPVTLRAWQRRY 27
                899*******************9 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.3
      HTH_28 33 ikryeeg 39
                ikr+ e 
  CTQ27156.1 53 IKRWIER 59
                4444444 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   8.1e-06     0.016      18      41 ..       4      27 ..       3      40 .. 0.85
   2 ?   -3.5   0.1       5.3   1.1e+04      35      40 ..      54      59 ..      52      61 .. 0.66
   3 ?   -3.1   0.0       3.9   7.8e+03       3      14 ..      97     108 ..      95     113 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.1e-06
      HTH_23 18 lsvreIAreLgvsrrTvyrwlkry 41
                +s+ e+A+++g+++ T++ w +ry
  CTQ27156.1  4 YSIGEVAERCGINPVTLRAWQRRY 27
                6888*******************9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.3
      HTH_23 35 yrwlkr 40
                 rw++r
  CTQ27156.1 54 KRWIER 59
                567665 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.9
      HTH_23   3 sereRlrillll 14 
                  +r+R++ + l 
  CTQ27156.1  97 PARIRAKLMALS 108
                 577888776665 PP

>> DUF3926  Protein of unknown function (DUF3926)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.41   8.1e+02      22      29 ..      84      91 ..      69      96 .. 0.72
   2 ?    8.8   0.1   0.00074       1.5      22      36 ..     223     237 ..     219     240 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.41
     DUF3926 22 LQEELSSy 29
                LQEE+ S 
  CTQ27156.1 84 LQEEMMSI 91
                89998875 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00074
     DUF3926  22 LQEELSSymqEttHs 36 
                 LQEEL S  qE++ s
  CTQ27156.1 223 LQEELLSHWQEQGFS 237
                 9***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1783.35
//
Query:       CTQ27157.1  [L=48]
Description: hypothetical protein CH1034_160145 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.27s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 356.35
//
Query:       CTQ27158.1  [L=184]
Description: Transcriptional regulator, LuxR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-09   35.0   0.0      1e-08   34.6   0.0    1.2  1  GerE             Bacterial regulatory proteins, luxR family
     0.0026   17.4   0.2     0.0043   16.7   0.2    1.3  1  CENP-B_N         CENP-B N-terminal DNA-binding domain
  ------ inclusion threshold ------
      0.058   13.3   0.0       0.11   12.4   0.0    1.4  1  Intein_splicing  Intein splicing domain
       0.16   12.2   0.2       0.44   10.7   0.0    1.8  2  HTH_28           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   2.3e-12     1e-08       2      53 ..     116     167 ..     115     171 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 2.3e-12
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvel 53 
                 ++++RE++v +l+ +G+ +  I+++ln+  kT+   + n+ kKL++  r++ 
  CTQ27158.1 116 QFTEREKKVIQLISNGEAVASIGRSLNLHIKTIYQIRLNLIKKLGCSGRTDF 167
                 68***********************************************985 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   9.5e-07    0.0043       8      42 ..     118     151 ..     114     157 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9.5e-07
                 -HHHHHHHHHHHHCTT-HHHHHHHHT--CCHHHHH CS
    CENP-B_N   8 TlreKievIqrleegeSkaelarrfnvpestlsdi 42 
                 T reK +vIq++  ge +a+++r +n+   t+++i
  CTQ27158.1 118 TEREK-KVIQLISNGEAVASIGRSLNLHIKTIYQI 151
                 66777.8***************************9 PP

>> Intein_splicing  Intein splicing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.5e-05      0.11      20      73 ..     119     172 ..     105     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.5e-05
                      TTEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEEETTS-EEEEETT-EEEECCT CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Intein_splicing  20 geevlslnledlklevksvkkliklklkelyeiklesgrkikaTpeHkllvvrd 73 
                      ++e+ +++l ++++ v+s+ +  +l++k++y+i+l+  +k+ +++   ++ ++ 
       CTQ27158.1 119 EREKKVIQLISNGEAVASIGRSLNLHIKTIYQIRLNLIKKLGCSGRTDFFNISR 172
                      55566678889999************************************9965 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.8e-05      0.44       4      31 ..     123     150 ..     122     152 .. 0.94
   2 ?   -2.6   0.0       1.4   6.2e+03      22      32 ..     168     179 ..     168     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.8e-05
      HTH_28   4 eiikllaaGhsvreaArelgisrrtvyr 31 
                 ++i+l+ +G++v+ + r l+++  t+y+
  CTQ27158.1 123 KVIQLISNGEAVASIGRSLNLHIKTIYQ 150
                 89*************************8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.4
      HTH_28  22 lgisr.rtvyrW 32 
                 ++isr +t ++W
  CTQ27158.1 168 FNISRsETFKSW 179
                 799997888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1484.99
//
Query:       CTQ27159.1  [L=70]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-05   25.7   0.0    1.1e-05   25.6   0.0    1.1  1  BDM           Putative biofilm-dependent modulation protein
    1.3e-05   25.0   0.8    1.5e-05   24.7   0.8    1.1  1  YmgB          Biofilm development protein YmgB/AriR
      0.007   15.9   0.6     0.0072   15.8   0.6    1.0  1  Tim29         Translocase of the Inner Mitochondrial membrane
  ------ inclusion threshold ------
       0.01   15.2   0.3       0.01   15.2   0.3    1.0  1  ERG2_Sigma1R  ERG2 and Sigma1 receptor like protein


Domain annotation for each model (and alignments):
>> BDM  Putative biofilm-dependent modulation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.6e-09   1.1e-05      13      68 ..      14      69 ..       5      70 .] 0.92

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.6e-09
         BDM 13 epalvnaieqGlraelGvvteddilmeltkwveasdndilsdiyqqtinyvvsGqh 68
                + al+  ie+ l  ++  v ++ ++ e+   +++  n+ilsd+y q+++ + s  h
  CTQ27159.1 14 NSALMKNIENTLIKQHRTVNNERMITEIQHRLQTESNEILSDLYLQALDMLYSKPH 69
                579********************************************998887655 PP

>> YmgB  Biofilm development protein YmgB/AriR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.8   3.3e-09   1.5e-05       3      52 ..      15      64 ..      13      67 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 3.3e-09
                HHHHHHHHHHHHHTT---SHHHHHHHHHHHHHT---HHHHHHHHHHHHHH CS
        YmgB  3 tevLgaiireilasggkvtnKaIIlkLiekLEsesdvvqldvyRqaLElV 52
                ++++++i + +++++++v+n  +I ++ ++L +es+ +  d+y qaL++ 
  CTQ27159.1 15 SALMKNIENTLIKQHRTVNNERMITEIQHRLQTESNEILSDLYLQALDML 64
                678999*****************************************985 PP

>> Tim29  Translocase of the Inner Mitochondrial membrane 29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.6   1.6e-06    0.0072      58     121 ..       5      69 ..       1      70 [] 0.91

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.6e-06
       Tim29  58 ktnPdeesfedaLlea.snelllvseeirnpksdkhvqsleklrnegrlrylsLglfsliyedey 121
                 +t P e  f++aL+++ +n+l+  + ++ n+     +q+  +  ++++l  l+L  + ++y +++
  CTQ27159.1   5 NTIPAEFVFNSALMKNiENTLIKQHRTVNNERMITEIQHRLQTESNEILSDLYLQALDMLYSKPH 69 
                 6789*********986489*****************************************99875 PP

>> ERG2_Sigma1R  ERG2 and Sigma1 receptor like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.3   2.3e-06      0.01      14      61 ..       3      51 ..       1      66 [. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.3e-06
  ERG2_Sigma1R 14 ldklleknyifdpkelqelakkaiakh.endtkavleeivkelkkeypd 61
                  ++++ + +++f+ + ++++ ++ i++h + + +++++ei+++l++e ++
    CTQ27159.1  3 IKNTIPAEFVFNSALMKNIENTLIKQHrTVNNERMITEIQHRLQTESNE 51
                  56667899*******************6799*************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       974  (0.0543254); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 571.55
//
Query:       CTQ27160.1  [L=168]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.028   14.6   0.1      0.042   14.1   0.1    1.3  1  DUF4451   Domain of unknown function (DUF4451)


Domain annotation for each model (and alignments):
>> DUF4451  Domain of unknown function (DUF4451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.3e-06     0.042      34      63 ..      18      47 ..       3      64 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.3e-06
     DUF4451 34 ekkekflklknssyekhlsfeHGvlsngsl 63
                +++ +++ ++++sy +hl+ +HG ++++++
  CTQ27160.1 18 ANELNLYSVNTGSYVYHLTNNHGQYTENFE 47
                5678899****************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1304.27
//
Query:       CTQ27161.1  [L=321]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-14   51.8  37.2    3.7e-10   39.4  27.9    2.0  2  Acyl_transf_3  Acyltransferase family
  ------ inclusion threshold ------
       0.37   10.9   0.1       0.37   10.9   0.1    3.5  4  Insulin_TMD    Insulin receptor trans-membrane segment


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.8   1.3e-07    0.0011      38      95 ..      33      90 ..      14      93 .. 0.79
   2 !   39.4  27.9   4.1e-14   3.7e-10     130     337 ..      98     308 ..      91     311 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.3e-07
                   xxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 38 qssqi....aflggfgvplFFllSGfflaamlyrrrglsklikrRilrlliplliwllliil 95
                    + +i     f++ ++ plFF++ G++ a     +r   ++   +i+ ++i++l+w  ++++
     CTQ27161.1 33 DYHWIlgllTFISTIATPLFFVVAGYLDA----QTRHDANWQIGKIKSVVIVFLFWVTVYYV 90
                   23333456679*****************6....9999999*******************997 PP

  == domain 2  score: 39.4 bits;  conditional E-value: 4.1e-14
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 130 atghlWfLwalfvlylllplllrllrkvrkshlllllilllllslvfirhelfgpatsvgllplpsvla..llfflfGalladaddrdrnlsrglk 223
                    +  + Wf++al+v+y + pl+++l   +r+  ++++l+ ll++s+++ ++   +p  +++ lp+ + l+  llf+l G l+ d +    +++ + +
     CTQ27161.1  98 YLIQPWFIFALIVIYTFHPLIAWLS--QRRGLFFAVLLTLLCCSYGYDLLSVIYPDRHLFSLPPQYRLWtwLLFYLTGQLFNDPKVAEWIRNPQVI 191
                    66788*************9997765..5666777777777778888888888889999999999999999************98877777666666 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 224 islllsllllalillalfgqtdggglvasvliqsaslllvslgimllllllfalpsrsafk........llrylgkiSygiYliHlpllmllqkll 311
                       +++l  + l+ +++  +     ++a+  +   +++l  + i++l++ll++ ++  +fk        +l   +k+  g+Y++H+ + +ll +l+
     CTQ27161.1 192 KGSIIALPFVYLFTWFYERHF----FFALFKADRNAFILTGSQIYILIVLLVIAANAVQFKknrewkeaVLATVSKAMTGVYILHYSVFHLLVMLI 283
                    666666666666666666666....59999999999999999999999999999999999999999****************************** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 312 rdwglnlgevlllvlllvvsvivsvv 337
                    + ++l  + + ++ l +v+sv++s++
     CTQ27161.1 284 PVHSLA-TKLGVIALTFVLSVLISLA 308
                    ***777.9999999999999999986 PP

>> Insulin_TMD  Insulin receptor trans-membrane segment
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1     0.058   5.2e+02      19      38 ..      71      90 ..      51      95 .. 0.71
   2 ?   -2.7   0.1      0.73   6.6e+03      16      27 ..     189     200 ..     181     204 .. 0.68
   3 ?   10.9   0.1   4.1e-05      0.37       2      42 ..     211     250 ..     210     252 .. 0.84
   4 ?   -3.6   0.5       1.4   1.3e+04      22      31 ..     294     303 ..     292     308 .. 0.50

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.058
  Insulin_TMD 19 igPviciillllvigavfvv 38
                 ig +  ++++ l  + v++v
   CTQ27161.1 71 IGKIKSVVIVFLFWVTVYYV 90
                 56666677777777777776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.73
  Insulin_TMD  16 kIvigPviciil 27 
                  +++ g++i + +
   CTQ27161.1 189 QVIKGSIIALPF 200
                  577788886654 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 4.1e-05
  Insulin_TMD   2 YFYvad.yldpsnivkIvigPviciillllvigavfvvvkKr 42 
                  +F+ a  + d   ++ I  g+ i i+++llvi+a  v +kK 
   CTQ27161.1 211 HFFFALfKAD--RNAFILTGSQIYILIVLLVIAANAVQFKKN 250
                  6777763444..6999************************95 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 1.4
  Insulin_TMD  22 viciillllv 31 
                  vi + ++l v
   CTQ27161.1 294 VIALTFVLSV 303
                  4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1067  (0.0595125); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2318.67
//
Query:       CTQ27162.1  [L=1021]
Description: Cation/multidrug efflux pump [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-162  542.4   1.2   2.1e-162  542.2   1.2    1.0  1  ACR_tran   AcrB/AcrD/AcrF family
    0.00067   19.1   4.5    0.00067   19.1   4.5    2.3  2  SecD_SecF  Protein export membrane protein


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  542.2   1.2  2.4e-166  2.1e-162       2    1021 .]       4    1013 ..       3    1013 .. 0.92

  Alignments for each domain:
  == domain 1  score: 542.2 bits;  conditional E-value: 2.4e-166
                  HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS- CS
    ACR_tran    2 ikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtd 98  
                  ++ fi+ p  ++++ l++ + G +++l++   + P ++  t  + t+ypGas++ ve+evt plE+a+++l+ l++vsS Ss+gls+it++  ++  
  CTQ27162.1    4 SRQFINNPTRVWLAILLLGVGGLFALLNIGRLEDPAFTIKTAVIVTHYPGASAQQVEEEVTLPLENAIQQLPSLDNVSSISSNGLSQITVNIASQYH 100 
                  788***************************************************************************************9998655 PP

                  ...HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHH CS
    ACR_tran   99 ...idiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqk 192 
                     + +   +   r+  a +  P +v +p +   + + ++++ +++  +++s t+ el ++ae +++++L  v+GVg+v + G   +++ + ++++k
  CTQ27162.1  101 sseLPQIWDELRRRVGDASRLFPPGVVPPFV---NDDFGDVFGFFFAISGDSFTNPELVRYAE-QLRRELVLVPGVGKVAIGGVIPQQINVDISLAK 193 
                  0004556678999*************55543...34557788888888888**********86.79******************************* PP

                  HHCTT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEE.ETTSCEEEHHHCEEEEEEESSS.SSEEEETTEEEEEEEEEEE CS
    ACR_tran  193 laklgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivk.nqdgskvrlrDvAkVelgaeee.rlaatfngkpavllevkkl 287 
                  +a+ g+tl+++   l++ nv ++aG++   +e + ++  g++qs++++++++v  +   + +rlrD+A+   g  ++ + +  +ng +av ++v  +
  CTQ27162.1  194 MAARGITLNQLAAILARLNVVSSAGEIRVGSESIRLHPTGEFQSIDELGDLLVSpHGASATTRLRDIATLSRGLTDSpASIYHANGRQAVTMGVSFI 290 
                  *****************************************************987778899***********98872677899************* PP

                  TTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BC CS
    ACR_tran  288 pganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslN 384 
                  pg n i+v +a +++l+++++  P+g++i+++yd++  v +s++   ++ l+a+++vv v+++F++ +r+ +i+a+++ l +lgt+ +++++g+ l 
  CTQ27162.1  291 PGVNVIDVGHALEARLQQMAADKPAGIDIAIFYDQAAEVAHSVNGFITNFLMALAIVVGVLLVFMG-VRSGIIIALSLALNVLGTLLIMYIWGIELQ 386 
                  ****************************************************************87.9***************************** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
    ACR_tran  385 lltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltl 481 
                   ++L++L +A  ++vD+AiV+vE +    + +g + l a+ + ++  + +l++ +++ + +f Pi + ++++G+  +++ + ++++++ls + alt+
  CTQ27162.1  387 RISLGALIIALSMLVDNAIVIVEGVLIARQ-QGSPLLGAINYVIRRSALPLLGATIIAILAFAPIGLSQDSTGEYCKSLFQVLLISLMLSWFSALTI 482 
                  ************************975444.58888************************************************************* PP

                  HHHHHHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB-HHHHHH CS
    ACR_tran  482 tPalcallLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgvsleqtqk 578 
                  tP+l  + L ++  + + +  ++ +       r+Y++ l+++l+++ ++l+++  ll++ ++ f+++ ++f+P+ ++  +++ + lp g+ +++t+k
  CTQ27162.1  483 TPVLIKWWLFKNAPSAA-AAEEKADPYRGSFYRGYQQALRILLQQKTLTLVLMGALLAGAIWGFTFVRQNFFPSSNTPIFFVDLWLPYGTDINATEK 578 
                  ******99988877776.678899999999******************************************************************* PP

                  HHHHHHHHHHTTTTEEEEEEEECECS.....SE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSSSCEE CS
    ACR_tran  579 vlkqvekilkekpevesvfavtGfae.....sgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletlsgvr 670 
                  + +++e  +  +p v  ++++ G            +++ s  ++i+ +  +         +  i+ +++++++    n+  ++    r+       +
  CTQ27162.1  579 MTRDIERSIAGQPGVVTTVSTIGQGSmrfilTYSGQRQYSNYAQIMVRMDD---------QRGIAPVTRHVEDWIARNYPQVNASTKRI-MFGPSGD 665 
                  ***************999999986531011112234444444444444444.........34677777777777777777777777777.3456668 PP

                  EEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE-GG CS
    ACR_tran  671 selqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvrleed 767 
                  s+++v + g d ++L+++a+q+   l++ p+  +vr ++q++++ +  ++  +   +lGv+ +di+++le+ ++gs ++   e++    v+vr +e+
  CTQ27162.1  666 SAIEVRIKGPDPDTLRALASQVGDILAADPATDSVRNDWQNRSKVIRPQYSPALGRELGVDKQDIDNALEMNFSGSRAGLYREGADLLPVIVRPPEA 762 
                  99*********************************************************************************************** PP

                  GSSSGGGGCCSEEEETTSC.EEEGGGTEEE.EEEEE-SEEEEETTCEEEEEEEEE..STTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHHH CS
    ACR_tran  768 lrsspedlkklkvrnkkgk.mvplsavaki.eeekgpnsierengsrsvvisgnv..aegdslseaeeavekiakkvklpegvtiewtgqaeqeqea 860 
                   r++ ++l+++ v +++ +  +pls+v++    e   + i r ++ r+++++ ++    g+ ++++ + v+    ++ lp+g++iew+g ae+  ea
  CTQ27162.1  763 ERQDANHLNNVLVWSQSRQqYIPLSNVINGfALEWEDPLILRRDRTRVLTVQTDPspLSGQTSGDILARVKPRIDALPLPHGYRIEWGGDAENSSEA 859 
                  *************8876544*******9851445556889999*********9985568************************************** PP

                  HCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHH CS
    ACR_tran  861 snsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaile 957 
                  ++ l + ++l  l++f++  +++ sl+++++i ltvPlal+G   + ll+g+++  +a++Gl+ l G+  +N+i+lve +++ ++  +k+ ++ai++
  CTQ27162.1  860 QQGLFTTLPLGYLVMFIITVLMFSSLKNAVAIWLTVPLALIGVTPGFLLTGIPFGFMALIGLLSLSGMLIRNGIVLVEEIEQQKQ--EKDQRQAIID 954 
                  ********************************************************************************99888..45579***** PP

                  HHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  958 aakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlva 1021
                  aa  RLrPiL+Ta +++lG+ PL+          q +++v++ Gl  +tvLtLl++Pv+Y+ ++
  CTQ27162.1  955 AATSRLRPILLTAFTTVLGLAPLLRD-----VFFQSMAVVIMFGLAFATVLTLLVLPVIYACFH 1013
                  ***********************975.....5789*************************9986 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.4  12.2    0.0099        88      38     186 ..     340     490 ..     325     493 .. 0.68
   2 !   19.1   4.5   7.4e-08   0.00067      28     184 ..     858    1010 ..     852    1015 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.0099
                 HHHHHHHHHHHHHHT-.HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH-..-SS-HHHHHHHHHHHHHH CS
   SecD_SecF  38 lialvliliyvalrFe.wrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkk..kratlkeiinlslnqtLt 133
                 ++  ++i++ v l F   r ++ + ++l+  v+ t+ ++ + gie++  +++al+  +   v++ +v+ + v   +++       ++ +i +s    L 
  CTQ27162.1 340 FLMALAIVVGVLLVFMgVRSGIIIALSLALNVLGTLLIMYIWGIELQRISLGALIIALSMLVDNAIVIVEGVLIARQQGspLLGAINYVIRRSALPLLG 438
                 3334445555555554145566666669******************************************99876444300345566666666666666 PP

                 HHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHH CS
   SecD_SecF 134 rtiltslttllvvvallllggdslkdfalallvGlivgtyssifiasplllll 186
                  ti+++l  + + ++    +g+  k++  +ll+ l++  +s++ i   l++++
  CTQ27162.1 439 ATIIAILAFAPIGLSQ-DSTGEYCKSLFQVLLISLMLSWFSALTITPVLIKWW 490
                 6666665533222222.234467777777888888888888877777777766 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 7.4e-08
                  HHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHH.HHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHH CS
   SecD_SecF   28 elaekavlallialvliliyvalrFewrvalaaiia.lvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkei 123 
                  e ++  +  l +  ++++i  +l F       ai + +   +i +   + l+gi++   ++++lL++ G  + + +v+ + ++++   k++++ +++
  CTQ27162.1  858 EAQQGLFTTLPLGYLVMFIITVLMFSSLKNAVAIWLtVPLALIGVTPGFLLTGIPFGFMALIGLLSLSGMLIRNGIVLVEEIEQQ---KQEKDQRQA 951 
                  55555556666666666666677777666666665526666677777899********************************999...445666777 PP

                  HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHHHHHH CS
   SecD_SecF  124 inlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifiasplll 184 
                  i ++ ++ L   +lt  tt+l ++ ll   +   +++a+++++Gl++ t+ ++++   + +
  CTQ27162.1  952 IIDAATSRLRPILLTAFTTVLGLAPLL--RDVFFQSMAVVIMFGLAFATVLTLLVLPVIYA 1010
                  777888999999999999999988874..7788999***********99999988766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1021 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.44
# Mc/sec: 7042.10
//
Query:       CTQ27163.1  [L=361]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-09   37.4   1.8    1.5e-09   37.4   1.8    1.9  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    4.5e-09   36.0   1.1    5.3e-05   23.0   0.3    2.6  2  Biotin_lipoyl_2  Biotin-lipoyl like
    4.5e-09   36.9   0.4    1.3e-05   25.8   0.0    3.1  3  HlyD_3           HlyD family secretion protein
      0.001   18.8   0.0        2.1    8.3   0.0    2.6  2  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
      0.058   13.6   0.5       0.19   12.0   0.1    2.2  2  RbcS             Ribulose-1,5-bisphosphate carboxylase small 


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.19   6.6e+02     178     200 ..      31      53 ..      19      60 .. 0.80
   2 !   37.4   1.8   4.1e-13   1.5e-09      22     204 ..      60     250 ..      50     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.19
                 XXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 178 eGkvdyiyptvdpetRtvkvRie 200
                   kv+ +  + +++ Rt+ +Rie
  CTQ27163.1  31 MVKVAQVTAVGNTQQRTFPARIE 53 
                 568999999999999**999998 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 4.1e-13
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  22 vsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalkakkklkkkelleaarerLrllgvs......eeqiaelektgkvqktvtvkap 114
                 +s +  G ve+l+++  g +V++Gq+La+l++ e  +  +e  +a++ ++++ ++ ++ a r+ + + +++      +++ a+l+  ++   ++++ ap
  CTQ27163.1  60 LSFKRGGQVESLDIR-QGASVAQGQTLARLNAREAQQRVNERQTAATLAQRQFDRFQTLAGRQAISQAEMDvqranrDAANAALKIAREELAQMSLIAP 157
                 566778*********.******************99999998888886666655544555555555544431111113344678888888899****** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 115 isGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkv...evtvealpgktfeGkvdyiyptvdpetRtvkvRieldNp 204
                 +sG+    ++r+ q+v +g++++t++  + + v++ ++e+ +  + + +++    vt++ lpg++f+++ +    + d++t t ++ ++++ p
  CTQ27163.1 158 FSGIAAGVHIRNHQVVAAGQPVITLTRTDLLDVVFSIPENLFTSLDIRNTAyrpVVTINTLPGREFTAEYKEHTGSSDNSTLTWQIVLTMPRP 250
                 *********************************************99999844459*************999999999999998887766655 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.3   1.5e-08   5.3e-05      10      44 ..      65      99 ..      56     112 .. 0.83
   2 !   10.9   0.0   8.4e-05       0.3       7      39 ..     156     188 ..     151     192 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.5e-08
  Biotin_lipoyl_2 10 sGrVaqlnVkdGqrVkaGdvLaelDsralqlalaq 44
                      G+V++l +++G  V +G++La+l+ r+ q +++ 
       CTQ27163.1 65 GGQVESLDIRQGASVAQGQTLARLNAREAQQRVNE 99
                     69*************************99977765 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 8.4e-05
  Biotin_lipoyl_2   7 apvsGrVaqlnVkdGqrVkaGdvLaelDsralq 39 
                      ap+sG  a ++++  q+V aG+  ++l  ++l+
       CTQ27163.1 156 APFSGIAAGVHIRNHQVVAAGQPVITLTRTDLL 188
                      899************************999987 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.6   1.3e+04      73      91 ..      34      52 ..      26      57 .. 0.57
   2 !    8.1   0.0    0.0012       4.4       6      32 ..      64      90 ..      63     133 .. 0.88
   3 !   25.8   0.0   3.8e-09   1.3e-05       2      95 ..     154     249 ..     153     257 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.6
      HlyD_3 73 ierisptvdaktgaykvev 91
                + ++++  +++++++++++
  CTQ27163.1 34 VAQVTAVGNTQQRTFPARI 52
                4444444445555666555 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0012
      HlyD_3  6 vdGvvvelnveegevvqagdelleiip 32
                ++G+v +l++++g  v++g++l+++  
  CTQ27163.1 64 RGGQVESLDIRQGASVAQGQTLARLNA 90
                579********************9875 PP

  == domain 3  score: 25.8 bits;  conditional E-value: 3.8e-09
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsik..kkgqkvtlkldqgsdytlkgkierisptvdaktgaykvevslen 95 
                 l Ap++G+ + +++++ +vv+ag+++ +++ +d l v +++p+    s++  ++  +  ++++  ++++ +++ ++ + ++d++t ++++ ++ + 
  CTQ27163.1 154 LIAPFSGIAAGVHIRNHQVVAAGQPVITLTRTDLLDVVFSIPENLFTSLDirNTAYRPVVTINTLPGREFTAEYKEHTGSSDNSTLTWQIVLTMPR 249
                 68********************************************99998766666667777677777777777777777776666666666655 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00084         3      44      73 .]      59      88 ..      57      88 .. 0.88
   2 !    8.3   0.0   0.00057       2.1      41      73 .]     150     182 ..     149     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00084
                   EEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 44 eieapkaGvvkeilvkeGdtvevgdllaki 73
                   e++ +  G+v+++ + +G++v +g+ la++
     CTQ27163.1 59 ELSFKRGGQVESLDIRQGASVAQGQTLARL 88
                   6777889********************986 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00057
                    EEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  41 memeieapkaGvvkeilvkeGdtvevgdllaki 73 
                    ++m + ap +G+ + +++ + + v +g++++++
     CTQ27163.1 150 AQMSLIAPFSGIAAGVHIRNHQVVAAGQPVITL 182
                    6899*************************9986 PP

>> RbcS  Ribulose-1,5-bisphosphate carboxylase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       4.2   1.5e+04      15      23 ..     120     128 ..     117     128 .. 0.83
   2 ?   12.0   0.1   5.2e-05      0.19      12      30 ..     143     161 ..     136     164 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.2
        RbcS  15 RaapaQasm 23 
                 R a +Qa m
  CTQ27163.1 120 RQAISQAEM 128
                 888999998 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 5.2e-05
        RbcS  12 tinRaapaQasmvAPFtGL 30 
                  i R   aQ s++APF+G+
  CTQ27163.1 143 KIAREELAQMSLIAPFSGI 161
                 389***************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3060.69
//
Query:       CTQ27164.1  [L=99]
Description: exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 743.90
//
Query:       CTQ27165.1  [L=143]
Description: Universal stress protein G [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-23   82.3   0.6    5.3e-23   82.1   0.6    1.0  1  Usp             Universal stress protein family
     0.0058   16.6   0.1     0.0064   16.5   0.1    1.1  1  DNA_photolyase  DNA photolyase


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.6     6e-27   5.3e-23       1     141 []       1     143 []       1     143 [] 0.96

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 6e-27
                 S-SEEEEEE-..SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH.HHHHHHCTTCEEEEEEEESSHHHHHH CS
         Usp   1 mykrIlVavD..gseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada.akaaaeaggvkvevvveegdpaeeil 96 
                 myk+I+V+vD  +   ++kAl +A  la+++ ++++l+hvi+++++  +    ++a++ e  l  +++e++  + ++   ++ + ++ v++g++++  +
  CTQ27165.1   1 MYKNIVVPVDvfDAGLADKALSHAKFLAQHSAGQIHLIHVIPAFSPVLTRGFISDARKMEDHLLNTAKEKLSeLVKKNGLAEDASHLYVRSGNVRDQVI 99 
                 9**********9999999******************************999999999999988888888777889999999****************** PP

                 HHHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp  97 evaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                  +a+e++ad ++vGsr   g++  llGS + +++r a++pV vVr
  CTQ27165.1 100 VLADELKADVVIVGSRN-PGIQTHLLGSEAANIVRYAHVPVFVVR 143
                 *****************.**************************8 PP

>> DNA_photolyase  DNA photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   7.2e-07    0.0064      15      95 ..      19     113 ..      16     142 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.2e-07
                     HHHHHH....HCTTSE.......EEEEE..EE-HH...HHTCGS-CHHHHHHHHHHHHHH..HHHHHHTT--EEEEESSHHHHHHHHHHHCTECE CS
  DNA_photolyase  15 pALaaA....aasgep.......vipvf..vldpe...kahklrvgaarvdfllesLadL..deeLrelgirLvvrrgdpadvlpelakelgasa 91 
                     +AL +A    ++s          vip+f  vl+     +a+k+  +++  +   e L +L  ++ L+e  ++L+vr+g+++d +  la el+a+ 
      CTQ27165.1  19 KALSHAkflaQHS--AgqihlihVIPAFspVLTRGfisDARKM--EDHLLNTAKEKLSELvkKNGLAEDASHLYVRSGNVRDQVIVLADELKADV 109
                     6888886653222..1346666688888766666665555555..9999999999****9555569****************************9 PP

                     EEEE CS
  DNA_photolyase  92 vvan 95 
                     v++ 
      CTQ27165.1 110 VIVG 113
                     9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1099.54
//
Query:       CTQ27166.1  [L=895]
Description: putative cation-transporting ATPase F [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-51  175.0   5.8    1.2e-51  174.8   1.7    2.8  2  E1-E2_ATPase     E1-E2 ATPase
    5.6e-38  130.5  10.9    5.6e-38  130.5  10.9    2.3  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    6.3e-21   75.6   2.9    5.4e-20   72.6   2.9    2.4  1  Hydrolase        haloacid dehalogenase-like hydrolase
      1e-18   66.8   0.8    3.1e-18   65.2   0.0    2.2  2  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    2.7e-12   46.6   0.0    5.6e-12   45.6   0.0    1.6  1  Cation_ATPase    Cation transport ATPase (P-type)
    5.8e-06   26.2   0.9      4e-05   23.5   0.6    2.0  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
    0.00025   21.5   0.0    0.00065   20.2   0.0    1.8  1  HAD              haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.15   3.7e+02     109     155 ..      53      95 ..      30     103 .. 0.54
   2 !  174.8   1.7   4.7e-55   1.2e-51       2     181 .]     117     310 ..     116     310 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.15
                   -HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHH CS
  E1-E2_ATPase 109 tplqkkldklgkvlvpvvlliallvflialllgkslaeallralall 155
                   +   +++  +      v + ++l+++l+  ++g+++  a++ a+a++
    CTQ27166.1  53 PAWLRFIAHFND----VLIYVLLAAALLKAVMGHWIDMAVILAVAVV 95 
                   444444444444....5555555555555555566555555555554 PP

  == domain 2  score: 174.8 bits;  conditional E-value: 4.7e-55
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-............G-TTEE-TT-EEEE-EEEEEE CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvek............ekgdmvfsGtvvvsgeakavV 85 
                   +l+++a  ir g+ e+i++  lvpGDiv+++agdr+paD r++e ++ +v+e++LTGEs+ vek            ++ + +fsGt+v sg  k++V
    CTQ27166.1 117 MLSSEAVAIRQGNHETIPTTSLVPGDIVVIRAGDRIPADLRVIEAHNlRVEEAILTGESTVVEKtteplsgdlplgDRSNLLFSGTTVSSGAGKGIV 213
                   67899999***************************************************************************************** PP

                   EE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT CS
  E1-E2_ATPase  86 tatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.eallralallvaaiPcaLplavplalalgarrlakk 181
                   +atg +telg+i ++++  ++ +tpl  ++dklgk +++++l++++++f++ ll ++ ++ e +l+ ++l+va++P++Lp++++++l+lg++++a++
    CTQ27166.1 214 VATGGNTELGHINQMMAGIEKHRTPLLVQMDKLGKAIFILILVMMAALFVFSLLFRDMPVsELMLSLISLAVASVPEGLPAIISIILSLGVQAMARQ 310
                   *******************************************99999999999999998799999*****************************96 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.4      0.41     1e+03      94     160 ..     251     274 ..     220     309 .. 0.57
   2 !  130.5  10.9   2.2e-41   5.6e-38       2     180 ..     717     886 ..     716     888 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.41
  Cation_ATPase_C  94 aFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsle 160
                      + ++lv++  + +++                                           + +++++++
       CTQ27166.1 251 FILILVMMAALFVFS-------------------------------------------LLFRDMPVS 274
                      222222222222222...........................................222233333 PP

  == domain 2  score: 130.5 bits;  conditional E-value: 2.2e-41
  Cation_ATPase_C   2 lplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgisekenklssnyaqtmaF 95 
                      lpl++++iLw+n+ t  ++++ La+e  ek+im+rpPr++k +++++  ++r++++g ++a++++++  ++l+  g+s++       + +t+ +
       CTQ27166.1 717 LPLTPVLILWMNMATSATLSFGLAFEAGEKNIMRRPPRDPKIHVMDGFAIWRVAFVGSMIAVSAFILE-AWLQPRGYSPE-------FIRTVLL 802
                      7*****************************************************************99.66666899996.......5****** PP

  Cation_ATPase_C  96 itlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsleewlialllalvvllvdelvK 180
                       tlv +q+f++ln+r ++   ++ +gl  nk ++++  + lllq+li+y p+++ +fgt+ l++  w+i+++++++++l++el K
       CTQ27166.1 803 QTLVTAQWFYMLNCRVSDGFSLT-KGLLANKGIWIVSGVLLLLQLLIIYAPFMQMLFGTTGLPFRYWVITFIIGFAMFLIVELEK 886
                      ****************9998888.9**********************************************************99 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   2.9   2.1e-23   5.4e-20       1     210 []     326     646 ..     326     646 .. 0.75

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 2.1e-23
                 SSEEEEESBTTTBCHHHHHHHHHHHH.........CHHHHHHHHHHHHCHHHHHHHHHHHHH...HHHH.HHHHHETTTE.................HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxx.xxxxxxxxxx.................xx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa.........alalaaaletgsehpigkalvaaakar...sgal.tgfatfigrg.................ay 69 
                 +++++ Dk+GTLt  e+ v+ vi              + +++ ++  ++p + a    ++       +l  + + ++++                  a+
  CTQ27166.1 326 MTVICSDKTGTLTMNEMTVKAVITADsvyrvegdsYEPVGKIHAIDDPTPVTIAPGSLFERYlrtI-DLcNDSQLIKEESglwkitggptegalkvlAA 423
                 5789*****************999996655555554444555555577777777766666666642.22233333333335666666678888888755 PP

                 HHTHHHHHHHH..HCHHHHH.HHHHHHHHHCHHHHHH.............................................................. CS
                 xxxxxxxxxxx..xxxxxxx.xxxxxxxxxxxxxxxx.............................................................. RF
   Hydrolase  70 aigkpewltal..dippdlg.aaigsaqsqgrtvall.............................................................. 103
                  +  p ++ +l  +ip d + + ++++ + g+++++l                                                              
  CTQ27166.1 424 KVTLPPLTSELrsKIPFDSQyKYMSTLYRLGEEEVVLvtgapdvlfrlcqyqqsdsglqpldlpywegkieeyareglrmvaaawkpaaagqtelthqd 522
                 555555666667767766541456777777777777788888888888888888888888899999999999999999999999999999999999977 PP

                 ...TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.........GGGESEEEEHHCES...........STTTSHHHH CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxx...........xxxxxxxxx RF
   Hydrolase 104 ...qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.........ddyfdaviasdiet...........vakpspegk 179
                       +l+v  + dp  ++pea  a+a   +agi+v ++tgd+p+ta+++ + lG               ++++ +++           +a  spe+k
  CTQ27166.1 523 lqqGVILLGVAGMMDP--PRPEAITAIADCLQAGIRVKMITGDHPQTAMSIGKMLGignagnaitG----RELEVMDDAqlsvaaqqfdiFARTSPEDK 615
                 76333778888889**..***********999************************9777544441....333333333555566678889999***** PP

                 HHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 180 vaaireLqgkpeevamVGDgvnDaaalaaAg 210
                  ++++ Lq k+e v m GDgvnDa+al++A+
  CTQ27166.1 616 FRLVQALQSKKEIVGMTGDGVNDAPALKQAD 646
                 ******************************8 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   1.2e-21   3.1e-18       1      68 [.      10      76 ..      10      77 .. 0.97
   2 ?   -1.5   0.2      0.83   2.1e+03      40      68 ..     233     261 ..     232     262 .. 0.78

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 1.2e-21
  Cation_ATPase_N  1 ehalsleevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalv 68
                     +++ s+ee+l++ + ++++G++  eaa rl++yG+N+l++k+ k++w +++ +f+++l+++Ll+aal+
       CTQ27166.1 10 YYQRSVEETLASVQ-SSPEGISGTEAATRLQQYGENALPQKPGKPAWLRFIAHFNDVLIYVLLAAALL 76
                     67899********9.9**************************************************98 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.83
  Cation_ATPase_N  40 ekkkkslwvkllkqftnplvilLlvaalv 68 
                      ek++++l+v+  k  +  ++++L++ a++
       CTQ27166.1 233 EKHRTPLLVQMDKLGKAIFILILVMMAAL 261
                      57778888887777788999999998886 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   2.2e-15   5.6e-12       2      90 ..     393     474 ..     392     475 .. 0.88

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 2.2e-15
  Cation_ATPase   2 lcNsaafsensekdevkllGnktEsALlvlaeklgldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrCth 90 
                    lcN++++  ++e + +k++G +tE AL vla+k++l +       +   +ipF+s+ K+ms++++l   ++ +++v GAp+++++ C++
     CTQ27166.1 393 LCNDSQL-IKEESGLWKITGGPTEGALKVLAAKVTLPPLTS----ELRSKIPFDSQYKYMSTLYRLG--EEEVVLVTGAPDVLFRLCQY 474
                    8******.**************************5555433....334679**************96..77888899**********86 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.16   4.1e+02      18      55 ..     541     578 ..     537     603 .. 0.86
   2 !   23.5   0.6   1.6e-08     4e-05     195     253 ..     618     677 ..     616     679 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.16
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelgld 55 
                  ++++ ai+ + ++gi v   TG ++++++++ + lg+ 
   CTQ27166.1 541 PEAITAIADCLQAGIRVKMITGDHPQTAMSIGKMLGIG 578
                  67899**************************9999976 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.6e-08
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEET.TS-HHHHHHSSEEE--GGGTHHHH CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmg.naseevkkaAdyvtksnnedGVak 253
                  l++ l+ ++e v   GDg ND + L++a++gvAmg  ++e  k+aAd+v ++ n   +a 
   CTQ27166.1 618 LVQALQSKKEIVGMTGDGVNDAPALKQADVGVAMGiKGTEVTKEAADMVLTDDNFATIAS 677
                  778899999999999********************678889999*****99999887776 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.5e-07   0.00065      18     188 .]     469     643 ..     457     643 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.5e-07
         HAD  18 llrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfv.....aevirpklldp...galellaahraaGdrvvvvS 108
                 ++   ++++++  ++ l   +++  ++e++r   +++a+++  + ag +e  +++l++ v     a       +dp   +a +++a +++aG+rv +++
  CTQ27166.1 469 FRLCQYQQSDSG-LQPLDLPYWEGKIEEYAREGLRMVAAAWKPAAAGQTELTHQDLQQGVillgvA-----GMMDPprpEAITAIADCLQAGIRVKMIT 561
                 444444444444.55566667777789999999999************************333331.....25666666*******999********** PP

         HAD 109 gglrplvepllaelg....adevlatelevdd....rltgelglegkpvrg..egkvaalrewlaaegegidlee.vvay.GDspsDlpllr 188
                 g + + +  + + lg      ++ + elev d     + ++   ++ + r   e+k + +++   + +      + +v   GD+++D p+l+
  CTQ27166.1 562 GDHPQTAMSIGKMLGignaGNAITGRELEVMDdaqlSVAAQ--QFDIFARTspEDKFRLVQA--LQSK------KeIVGMtGDGVNDAPALK 643
                 ***************66655555555666666664422222..4444444433444444444..2222......2266667******99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (895 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 6198.70
//
Query:       CTQ27167.1  [L=427]
Description: pectin methylesterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-15   56.7   4.0    7.1e-11   41.4   3.1    2.9  3  Pectinesterase  Pectinesterase


Domain annotation for each model (and alignments):
>> Pectinesterase  Pectinesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0     0.075   1.3e+03     278     296 ..      42      60 ..      37      61 .. 0.84
   2 !   12.9   0.0   1.9e-06     0.034      10      62 ..      92     145 ..      81     166 .. 0.75
   3 !   41.4   3.1   3.9e-15   7.1e-11      73     207 ..     192     341 ..     182     353 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.075
                     EEE--HHHHGGGSHHHHST CS
  Pectinesterase 278 kvilskeeaekftvakfik 296
                     + il++eea++ft+a + +
      CTQ27167.1  42 RPILNAEEAKNFTPAAYFQ 60 
                     67899*********99876 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.9e-06
                     SSBSSHHHHHHHS.-SS-SS-EEEEE-SEEEE--EEE-TTS-SEEEEES-TTTE CS
  Pectinesterase  10 gkfktiseavaav.peksekrfviyvkaGvYeenvevekkktnvvlvGdGkekt 62 
                      +++ti++av+a+  ++s++r+ i +  G Y  +v v+     ++l+G G +  
      CTQ27167.1  92 VTHTTIQAAVDAAiARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPI 145
                     4689******87625788899***************************998754 PP

  == domain 3  score: 41.4 bits;  conditional E-value: 3.9e-15
                     T--SGGG-SEEE-STT-EEES-EEEE---GG....G----SEEE--TTEEEES-EEE-STT-EEE-S.........SEE...EEES-EEEESSS- CS
  Pectinesterase  73 gkttfktatvavvgegfiarditfentaGpe....khqavalrvdsDlsvfyrcslegyqDtlyvhs.........kRq...fyreceitGtvDf 151
                     ++  + +a +  + +g+  +++t+ n+ G +    +hqavalr+d+D+  + ++++ g q+t++v           +Rq      ++ i G vD 
      CTQ27167.1 192 TVGVMCSAVFWSQNNGLQLQNLTIANNLGDSvdagTHQAVALRSDGDQVQINKVNILGRQNTFFVTNsgvqnrlqdNRQtrtLVTNSYIEGDVDI 286
                     45667899999999************9996433338****************************85322222222234422278899******** PP

                     EEE--EEEEES-EEEE---STT--EEEEEE----TTS--EEEEES-EEEE-TTTGG CS
  Pectinesterase 152 ifGnaaavlqnceivarkplkgqkntvtaqgrkdpnqntGiviqnckitaeedlla 207
                     + G +a+v+ n+++ + +  ++++++v a +   ++ + G+   n+++ta+ d +a
      CTQ27167.1 287 VSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATL-KSVTYGFLATNSRFTASGDNVA 341
                     ***************************998765.5677899999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3067.14
//
Query:       CTQ27168.1  [L=419]
Description: Imidazolonepropionase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-17   63.8   0.6    5.4e-08   32.7   0.2    2.7  2  Amidohydro_3  Amidohydrolase family
    5.9e-14   52.1   0.0    2.3e-12   46.9   0.0    2.8  1  Amidohydro_1  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   1.2e-10     1e-06       3      29 ..      71      97 ..      69     114 .. 0.84
   2 !   32.7   0.2   6.1e-12   5.4e-08     256     448 ..     230     395 ..     109     403 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.2e-10
  Amidohydro_3  3 iDakGrlvlPGFvDsHtHlagggvnlr 29
                  iD++Grlv+PG++D HtHl  gg+ ++
    CTQ27168.1 71 IDLEGRLVTPGLIDCHTHLVFGGSRAQ 97
                  9*******************9996653 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 6.1e-12
  Amidohydro_3 256 gwpdfedealaelvaaadergldvaihaigdaavddvldafeaaaekngnqdrrrlehaegvtesqiervaalqvaagvqpvfnf..edelldsrlg 350
                       f+ ++ ++++ aa++ g++v  h+ + +++         a+    +++  +++h e +te+ ++++++ +  a++ p+  +  +         
    CTQ27168.1 230 ENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLG-------GAQLVSRYHGL-SADHIEYLTEEGVAAMRESGTVAALLPGAFYflN--------- 309
                   45567788889999999999999999999999988.......44444445666.899***********************87665331......... PP

  Amidohydro_3 351 perargs...tpvkellnagvkvalgsDapvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvv 444
                             +pv +l++  v++a ++D     f+p  +  a + +   ++ ++++ +  l+ eea a +Tr++A+alg +   G+L++G+ A++++
    CTQ27168.1 310 ------EtrkPPVELLRKYQVPMAVATD-----FNPGTSPFASLHLAM-NM-ACVKFG--LTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAI 391
                   ......13459*****************.....999999999995444.44.566555..************************************* PP

  Amidohydro_3 445 ldad 448
                   +da+
    CTQ27168.1 392 WDAE 395
                   **64 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   2.6e-16   2.3e-12       1     321 [.      77     397 ..      77     410 .. 0.76

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 2.6e-16
                   EEEE-EEEEEEECETTECSSSGHHHHH...........................STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH..HHHHHHH CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwl...........................vppetaaealesgiktalksGtttvadmgattst..giealle 68 
                   +v+PGlID H+Hl ++ +r +   +w                             ++ ++ + ++  ++++l+ G+tt    +    +  + + +l+
    CTQ27168.1  77 LVTPGLIDCHTHLVFGGSRAQ---EWEqrlngvsyqtisasggginstvratrdSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDlpNERKMLR 170
                   59***********87766555...666667888899999************99888888888888899**********9543333444677777777 PP

                   HHHTSSSEEEEEEESSEGGS........GCCCSHHH.HHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE..TS CS
  Amidohydro_1  69 aaeelplglrilggkvsldr........gsaetska.sreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHa..le 154
                    a++l+   +++++ + l+         g+a+  ++ ++e++++      +   +g++++     e ++fs+ + + ++++a + ++pv  H+  l+
    CTQ27168.1 171 VARQLADHNGVELSATLLSAhatppeyqGDANGYITlVCETILPTL----W--QEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVeqLS 261
                   7777555667777777777788**9999555555542577777765....4..34555555556689**************************9988 PP

                   SCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEE..HHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHH.TSCEEEEEEC CS
  Amidohydro_1 155 tkgevedaeaafgetiehgthlevaeslglldeiklilahgvhlt..pteaellkerlkeagvahcpfsnsilrsgrealrkalde.GvkvglgtDg 248
                   + g  + +++ +g    ++ h e++ +    + + ++++ g+     p           +a           l++ r +  ++l++  v ++++tD 
    CTQ27168.1 262 SLGGAQLVSRYHG---LSADHIEYLTE----EGVAAMRESGTVAAllP-----------GAFYF--------LNETRKPPVELLRKyQVPMAVATD- 331
                   8888889999999...66666666555....56666666666555332...........34444........9999999999**999*********. PP

                   TTSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC.CT CS
  Amidohydro_1 249 aasgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl.di 321
                    + g s+  + +l la+ +++       + gl+++ea + +T ++A+alg+    G +++G+ A+++++d  ++
    CTQ27168.1 332 FNPGTSP--FASLHLAMNMAC------VKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAeHP 397
                   6555555..344455553333......5888**************************************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3216.32
//
Query:       CTQ27169.1  [L=318]
Description: Formimidoylglutamase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-54  183.2   0.1      1e-53  182.7   0.1    1.2  1  Arginase  Arginase family
  ------ inclusion threshold ------
      0.037   14.4   0.1      0.077   13.4   0.1    1.5  1  DUF2564   Protein of unknown function (DUF2564)


Domain annotation for each model (and alignments):
>> Arginase  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.7   0.1   1.1e-57     1e-53       2     277 ..      45     313 ..      44     315 .. 0.89

  Alignments for each domain:
  == domain 1  score: 182.7 bits;  conditional E-value: 1.1e-57
                 EEEEEEEE--T...TTSSSGGGGGHHHHHHHHHHTSBTHCHEETTTTESCCSEEEEEEEEE--SSCHHH.HHHHHHHHHHHHHHTTCEEEEEESSGGGH CS
    Arginase   2 dvallGvPfda...agsgrpGarfGPraireasarleealeynlelgvleelkivdlgdvavtpvdnee.vleqieeavaeilkagklpivlGGDHsia 96 
                 d+allG+++d+   +++gr+Ga+ GP+ +r+a+a++++    ++ ++     ++vd+g+++v+  ++ e +++++ eava+  +agk+++vlGG+H+ a
  CTQ27169.1  45 DIALLGFACDEgvrRNKGRTGAADGPATLRRALANMAS----HQGHD-----RCVDMGTISVDG-EQLEaAHQALREAVADCQRAGKRTLVLGGGHETA 133
                 79*********99889****************999996....23344.....89********97.555538**************************** PP

                 HHHHHHHHHHH.STTEEEEEESSS----SSCTTTBSSSTTSHHHHHHHHTSECG...CEEEEEEE-STCSH..HHHHHHHTTSEEEEHHHHHHHHHHHH CS
    Arginase  97 lgilralaeky.gkplgvihfDAHaDlrtpetegsgnshGtpfrraaeegllkp...kklvqiGirsvdne..eyelakelgirvitmreidelglkav 189
                 +g+ +++ +++ g+++g+i++DAH+Dlr ++      s+Gtpfr+ a e +  +   +++++iG+    n+   ++ a+  ++ ++++ e+     ++v
  CTQ27169.1 134 FGHGAGVLDAFpGEKVGIINLDAHLDLRFAD----CASSGTPFRQLALE-CDAQqrgFHYTCIGVSRAANTqaLWDEAALRQVAIVEDLEVLTAFETRV 227
                 ***********9899*************988....589*******8844.3333357**************66333334457889999998888889** PP

                 HHHHHHHHTCTTSEEEEEEEGGGBBTTTSTSSSS-BSS-B-HHHHHHHHHHHHCHSEEEEEEEE-B-GGGSSTTTHHHHHHHHHHHHH CS
    Arginase 190 veeilervgaeedpvylSfDiDvlDpavaPGtGtpepgGltlrellallrelaeklnlvgaDvvEvnPaldteaeqtarlaarlvrel 277
                 + e+++ ++ + d +yl++D+Dvl +  +P++++p++ G+ l+ ll++++ l ++++l ++D+vE+nP +d+++ q ar+aar+++++
  CTQ27169.1 228 LPELERNIA-QFDRLYLTIDLDVLPAREMPAVSAPAALGVPLATLLRIVEPLCRSGKLQAVDLVEFNPLFDIDG-QGARAAARVAWQI 313
                 ********5.889**************************************9999*****************76.***********95 PP

>> DUF2564  Protein of unknown function (DUF2564)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   8.6e-06     0.077      16      50 ..      87     121 ..      81     126 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.6e-06
     DUF2564  16 qkmvGqATmsmdpdqlesAtqAiedAreqlssaee 50 
                 ++ v + T+s d +qle+A+qA+ +A ++ ++a +
  CTQ27169.1  87 DRCVDMGTISVDGEQLEAAHQALREAVADCQRAGK 121
                 5788899*******************999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2693.73
//
Query:       CTQ27170.1  [L=241]
Description: Histidine utilization repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-34  119.0   2.3    1.9e-34  118.5   2.3    1.2  1  UTRA       UTRA domain
    7.7e-24   83.1   0.0    1.4e-23   82.3   0.0    1.5  1  GntR       Bacterial regulatory proteins, gntR family
    0.00017   21.3   0.0    0.00039   20.1   0.0    1.6  1  HTH_DeoR   DeoR-like helix-turn-helix domain
     0.0059   16.5   0.0      0.013   15.5   0.0    1.5  1  HTH_Crp_2  Crp-like helix-turn-helix domain
      0.007   16.0   0.0      0.023   14.3   0.0    1.8  2  RP-C       Replication protein C N-terminal domain
     0.0077   16.1   0.0      0.014   15.4   0.0    1.4  1  MarR       MarR family
  ------ inclusion threshold ------
      0.017   15.3   0.0      0.051   13.7   0.0    1.8  1  AbiEi_4    Transcriptional regulator, AbiEi antitoxin
      0.025   14.2   0.0      0.042   13.4   0.0    1.3  1  HTH_24     Winged helix-turn-helix DNA-binding
      0.029   14.3   0.0      0.072   13.0   0.0    1.7  1  MarR_2     MarR family
      0.084   12.8   0.0       0.14   12.2   0.0    1.3  1  DUF977     Bacterial protein of unknown function (DUF977)
       0.12   12.4   0.0       0.25   11.3   0.0    1.5  1  HTH_11     HTH domain
       0.14   11.9   0.0       0.29   10.8   0.0    1.5  1  HTH_41     Helix-turn-helix domain
       0.17   11.8   0.0       0.39   10.7   0.0    1.5  1  HTH_36     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> UTRA  UTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   2.3   1.4e-37   1.9e-34       2     141 .]      98     234 ..      97     234 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.5 bits;  conditional E-value: 1.4e-37
                 CCCSEEEEEEEEEEEE--HHHHHHHTS-TTSEEEEEEEEEEETTEEEEEEEEEEEGGGTTTCHHHHHHCS-HHHHHHHHHTTSEEEEEEEEEEEE--HH CS
        UTRA   2 qglepktevlsleevpasaeiaeaLglpagepvlrieRlrladgepvaleesylpaslvpdlleedleegslyayleerlgvpitraeetiearladae 100
                 +++++++evl lee++a+   a+aL +p+g+++++   +++++++pv++e+++++a++vpd+l +d++ +++++yl     +p+t++e+++ea+ a+ae
  CTQ27170.1  98 RHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSL--IAPLTEGEHIVEAVQATAE 194
                 7899************************************************************************77..******************* PP

                 HHHHHTSTTT-EEEEEEEEEEETTSCEEEEEEEEEETTTEE CS
        UTRA 101 eaelLgisagspvLviervtydadgrpveysrsyyrgdrfk 141
                 e++lL+i+a++p+L+i+r+t++   ++v  +r +++g+r++
  CTQ27170.1 195 ECALLHIHAHDPCLLIRRRTWST-THIVSHARLLFPGSRYR 234
                 ***********************.***************97 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.0     1e-26   1.4e-23       2      64 .]      14      76 ..      13      76 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 1e-26
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                ye+v++++ e+I+sg++rp+d++Pse eL+a+fg+sr+t+++ALr+L+ egl++r qg+GtfV
  CTQ27170.1 14 YEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFV 76
                99************************************************************9 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.8e-07   0.00039      19      49 ..      41      71 ..      38      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.8e-07
    HTH_DeoR 19 elvellgvSeaTiRRDLneLeeqglltRthG 49
                elv+++g S +Ti R L+eL+ +gll+R  G
  CTQ27170.1 41 ELVAQFGFSRMTINRALRELTDEGLLVRLQG 71
                8***************************988 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.2e-06     0.013      26      53 ..      41      68 ..      32      77 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.2e-06
                HHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
   HTH_Crp_2 26 elAsmlGltretvsrilseLkreglisr 53
                el +  G +r t++r+l+eL +egl+ r
  CTQ27170.1 41 ELVAQFGFSRMTINRALRELTDEGLLVR 68
                56667899*****************984 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.7e-05     0.023      72     103 ..      37      68 ..      23      70 .. 0.94
   2 ?   -2.0   0.0       1.7   2.4e+03     132     157 ..     175     200 ..     171     204 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
        RP-C  72 psNaqLsralglsestlrrhlaaLveaGliir 103
                 ps a+L  ++g+s+ t+ r l++L + Gl++r
  CTQ27170.1  37 PSEAELVAQFGFSRMTINRALRELTDEGLLVR 68 
                 99***************************997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.7
        RP-C 132 llaRaeElealaeevraerralrrlr 157
                 l+a ++E e+++e+v+a +++++ l+
  CTQ27170.1 175 LIAPLTEGEHIVEAVQATAEECALLH 200
                 66777888999999999999988775 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   9.8e-06     0.014      19      51 ..      38      70 ..      33      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.8e-06
                EHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR 19 svseLakklgvskstvtrvldrLekkGlieRsk 51
                s +eL  ++g s++t+ r+l++L ++Gl+ R +
  CTQ27170.1 38 SEAELVAQFGFSRMTINRALRELTDEGLLVRLQ 70
                5679**************************987 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.7e-05     0.051      18      45 ..      41      74 ..      39      76 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.7e-05
     AbiEi_4 18 elea.aGispsa....lrrLvrkGwLvrlr.rGv 45
                el a  G s+++    lr+L+++G+Lvrl   G+
  CTQ27170.1 41 ELVAqFGFSRMTinraLRELTDEGLLVRLQgVGT 74
                7777799999999999************986665 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     3e-05     0.042      21      47 ..      40      66 ..      38      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3e-05
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGlI 47
                +eL  + g S+ t+nr l++L++eGl+
  CTQ27170.1 40 AELVAQFGFSRMTINRALRELTDEGLL 66
                6888999******************96 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.2e-05     0.072      25      54 ..      40      69 ..      31      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-05
                HHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 25 gelarrlglsksavsrilkrLvaaGLverr 54
                +el++ +g s+ +++r+l++L + GL++r 
  CTQ27170.1 40 AELVAQFGFSRMTINRALRELTDEGLLVRL 69
                69************************9985 PP

>> DUF977  Bacterial protein of unknown function (DUF977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.8e-05      0.14       4      68 ..      12      78 ..      10     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.8e-05
      DUF977  4 Pktqeereelkerii.Glvkkneriti.sdleritGvgrtsvrkylvdvlerGdlirpGkyGvfrde 68
                P+ ++ ++ + e+i  G+ + ++ri   ++l++ +G  r ++++ l++  + G l+r   +G f  e
  CTQ27170.1 12 PFYEKVKQAISEKIHsGVWRPHDRIPSeAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAE 78
                6777778888999853888999**965279***************************9999999765 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00018      0.25      19      45 ..      40      68 ..      37      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
      HTH_11 19 eeLAeeLnvSrrtvrrdIkaLeelg..vp 45
                +eL  +++ Sr+t+ r +++L++ g  v+
  CTQ27170.1 40 AELVAQFGFSRMTINRALRELTDEGllVR 68
                688899*****************995554 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00021      0.29       4      35 ..      34      65 ..      33      76 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
      HTH_41  4 dRlktIeelakeleLSvGlvQkALklLeddka 35
                dR+++  el  +++ S+ ++  AL  L d++ 
  CTQ27170.1 34 DRIPSEAELVAQFGFSRMTINRALRELTDEGL 65
                899999***********************996 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00029      0.39      26      55 .]      37      66 ..      35      66 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00029
      HTH_36 26 psqetlakrlglsknTvsraikeLeqlGyi 55
                ps + l +++g s+ T+ ra++eL + G++
  CTQ27170.1 37 PSEAELVAQFGFSRMTINRALRELTDEGLL 66
                67788999****************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1824.23
//
Query:       CTQ27171.1  [L=562]
Description: Urocanate hydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-93  309.6   0.3      1e-92  309.0   0.3    1.3  1  Urocanase_C  Urocanase C-terminal domain
    6.5e-87  290.6   0.0    9.2e-87  290.1   0.0    1.2  1  Urocanase    Urocanase Rossmann-like domain
    8.5e-63  209.7   0.0    1.7e-62  208.8   0.0    1.5  1  Urocanase_N  Urocanase N-terminal domain


Domain annotation for each model (and alignments):
>> Urocanase_C  Urocanase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.0   0.3   1.7e-96     1e-92       1     195 [.     351     545 ..     351     546 .. 0.99

  Alignments for each domain:
  == domain 1  score: 309.0 bits;  conditional E-value: 1.7e-96
                  HHHTTT---EEEEETT--HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----SS-EEE----TTHHHHHHHHHHHHHHHSSSSS-EEEEE-S-STTS CS
  Urocanase_C   1 plFsegkGPFRwvalsgdpeDlaktdeavlellkekedlirWikeAeekvkvqGlpaRilyldaeeRekialafnelvregeikapvvlgRDhlDvgs 98 
                  plF++g+GPFRwvalsgdp+D++ktd+ v+e++k++++l++W+++A+e++++qGlpaRi++++ e R+k++lafne+vr+ge++ap+v+gRDhlD+gs
   CTQ27171.1 351 PLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGS 448
                  79************************************************************************************************ PP

                  EE-TTTTTTT-TTS-TTB-HHHHHHHHHHHHHT-SEEEEEESTTT-TTS-EEEEEEEEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHH CS
  Urocanase_C  99 vasPfretenikDGsdaiaDwavlnallnaargatwvslhnGGgvgiGesinagfvvvldGteeaeerlervltaDvalGvvRradagyeealevak 195
                  vasP+rete+++DGsda++Dw++lnalln+a+gatwvslh+GGgvg+G s+++g+v+v dGt+ea++r++rvl++D+a+Gv+R+adagye a+e+a 
   CTQ27171.1 449 VASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAA 545
                  ********************************************************************************************99875 PP

>> Urocanase  Urocanase Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.1   0.0   1.5e-90   9.2e-87       1     210 []     140     348 ..     140     348 .. 1.00

  Alignments for each domain:
  == domain 1  score: 290.1 bits;  conditional E-value: 1.5e-90
                 TTHHHHHHHHHHHHHHHHHHST.T--TT-EEEEE--STTGGGHHHHHHHTT-EEEEEES-HHHHHHHHHTTS-SEEES-HHHHHHHHHHHHHCT--EEE CS
   Urocanase   1 GpQGivqGTyetllnaarkklgkgdlkgklvvtaGlGgMsgaQplAatiagavalvvevdesriekrleqgyvdevaddldealalikeakkekealsi 99 
                 G+QGivqGTyet+++a+r++++ g+lkg++v+taGlGgM+gaQplAat+aga++l +e+++sri+ rl+++yvde+a++ld+ala+ik++++e++a+si
  CTQ27171.1 140 GSQGIVQGTYETFVEAGRQHYQ-GSLKGRWVLTAGLGGMGGAQPLAATLAGACSLNIECQQSRIDFRLRTRYVDEQATSLDDALARIKKYTAEGRAISI 237
                 99*******************9.**************************************************************************** PP

                 EEES-HHHHHHHHHCTT---SEE---S-TT-TTTS---TT--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-EE-B-SS-HHHHHHHTT-T CS
   Urocanase 100 gllgnvvdvleelveegvlvdlvsdqtsahdplnGYlPegltleeakelrkedpekfkeevkeslarhveailklqekGavvfdYGnnlrkeakeagvk 198
                 +l+gn++++++elv++gv++d+v+dqtsahdpl+GYlP+g++ ee ++ +++dp+    ++k+s+a hv+a+l+++e G+ +fdYGnn+r++a+e gv+
  CTQ27171.1 238 ALCGNAAEIVPELVKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVS 336
                 *************************************************************************************************** PP

                 TGGGS-BHHHHT CS
   Urocanase 199 eafkypsyvedi 210
                 +af++p++v+++
  CTQ27171.1 337 NAFDFPGFVPAY 348
                 **********98 PP

>> Urocanase_N  Urocanase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.8   0.0   2.8e-66   1.7e-62       1     127 []      11     137 ..      11     137 .. 0.99

  Alignments for each domain:
  == domain 1  score: 208.8 bits;  conditional E-value: 2.8e-66
                  -----SS--SSSSHHHHHHHHHHHHCT-TTT-SBGGGTEEETTTEESSSSHHHHHHHHHHHHH--TTEEEEEETTEEEEEEE--TTS-SEEEEES-B- CS
  Urocanase_N   1 ikakrgeelkaksweaeailrmleNnLdpevaekpeeLvvYggtgkaarnweqfelivktLkeleedetLlvqsGkpvglfksheeaPrvliansnlv 98 
                  ++a+rg++l+aksw +ea lrml+NnLdp+vae+p+eLvvYgg+g+aarnwe++++ivk+Lk+le+detLlvqsGkpvg+fk+he++Prvliansnlv
   CTQ27171.1  11 VRAPRGTTLTAKSWLTEAPLRMLMNNLDPDVAENPHELVVYGGIGRAARNWECYDAIVKALKNLESDETLLVQSGKPVGVFKTHENSPRVLIANSNLV 108
                  69************************************************************************************************ PP

                  GGG-SHHHHHHHHHTT---B-TTTTTTT- CS
  Urocanase_N  99 pkyateeefeeleakgltmyGqmtAgswi 127
                  p++at+e+f+el+akgl+myGqmtAgswi
   CTQ27171.1 109 PHWATWEHFNELDAKGLAMYGQMTAGSWI 137
                  ****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4370.62
//
Query:       CTQ27172.1  [L=508]
Description: Histidine ammonia-lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.9e-182  604.9   9.0     1e-181  604.7   9.0    1.0  1  Lyase_aromatic  Aromatic amino acid lyase


Domain annotation for each model (and alignments):
>> Lyase_aromatic  Aromatic amino acid lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  604.7   9.0  5.7e-186    1e-181       1     464 []      11     472 ..      11     472 .. 0.98

  Alignments for each domain:
  == domain 1  score: 604.7 bits;  conditional E-value: 5.7e-186
                     --HHHHHHHHTCCCEEEE-HHHHHHHHHHHHHHHHHHHCTB--TTTSB-SGGGGGBB--HHHHHHHHHHHHHHC---EEEE--HHHHHHHHHHHH CS
  Lyase_aromatic   1 LtledvvavargkakvelspearerveasravleeilaegepvYGvntGfGaladvripkedleelqrnllrshaaGvgeplpeevvRaamllrl 95 
                     L+l+++ +v ++ ++++l+  a +++++s+a++++ilaeg++ YG+ntGfG la++ri++edle+lqr+l+ shaaGvgepl+++ +R++m+l++
      CTQ27172.1  11 LSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLARLIMVLKI 105
                     7899******************************************************************************************* PP

                     HHHTTS-S---HHHHHHHHHHHHCTEEE--EEES-------HHHHHHHHHHHTTSSTCCET.TEEEEHHHHHHHTT------TTTHHHHCCSTTH CS
  Lyase_aromatic  96 nslakGysGvrpevverllellnagitPvvperGSvGaSGDLaplahlalvliGegevyyk.gerlpaaealaeaglepleleakEgLAlinGta 189
                     nsl++G+sG+r++v+++l+ l+nag+tP++p +GSvGaSGDLaplah++l+l+Geg+++++ g+ lpa eal++ glep++l+akEgLAl+nGt+
      CTQ27172.1 106 NSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRgGDWLPATEALRQVGLEPITLAAKEGLALLNGTQ 200
                     ***********************************************************99899******************************* PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-BCGGG-HHHHCCS--HHHHHHHHHHHHHTTT.-SSS...-SB-SS-SS--HHHHTHHHHHHH CS
  Lyase_aromatic 190 lmtalaalaledaerllrladvaaAlslealrGsteafdprihalrphpgqievAarlralleg.Selv.shekdeerlvQDayslRcaPqvhGa 282
                     ++ta+a+  l++ae l++ a v++Al++ea  Gs+++fd+rih++r ++gqi++Aa +r+ll + S+++ sh +++++ vQD+yslRc Pqv+Ga
      CTQ27172.1 201 ASTAFALRGLFEAEGLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDdSAISqSH-HNCSK-VQDPYSLRCQPQVMGA 293
                     **************************************************************6637777877.899**.**************** PP

                     HHHHHHHHHHHHHHHHTS--SSSEE.EGCCTCCE---TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTTTTT--GGG-SSTCTTB-TTHH CS
  Lyase_aromatic 283 vldalaaarevleiElnsatDNPlvddeeegavlsgGnFhgepvalalDklaialaelaniserrierLvnpalsegLpafLaaeepglnsgfmi 377
                     +l ++++a+evl  E+n+++DNPlv  ++e++v+sgGnFh+epva+a+D++a+a+ae++++serri+ ++++++s +Lp+fL+ +++g+nsgfmi
      CTQ27172.1 294 CLTQIRQAAEVLLAEANAVSDNPLV-FAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMS-QLPPFLV-KNGGVNSGFMI 385
                     *************************.88999*******************************************9.8******.9********** PP

                     HHHHHHHHHHHHHCHCS-SGGG--TCTTTTCSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCC-HHHHHHHHHHHC CS
  Lyase_aromatic 378 aqytaaalvsenktlahPasvdsiptsanqeDhvSmgliaarkllevvenlekvlAiellaaaqaldlrrklksspateavyeavre 464
                     aq+taaal+senk l+hP svds+ptsanqeDhvSm++ a r+l+ ++en++ vlA+e+laaaq+ld+r+ l++sp +e++++++re
      CTQ27172.1 386 AQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRE 472
                     ********************************************************************887989******9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3771.88
//
Query:       CTQ27173.1  [L=460]
Description: putative histidine transport protein (APC family) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-97  326.5  51.4    2.9e-97  326.3  51.4    1.0  1  AA_permease    Amino acid permease
    1.8e-41  142.4  54.2    2.2e-41  142.1  54.2    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.3  51.4  3.2e-101   2.9e-97       1     475 [.      17     454 ..      17     457 .. 0.96

  Alignments for each domain:
  == domain 1  score: 326.3 bits;  conditional E-value: 3.2e-101
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+ +ialg++iGtglf g+++++ +aGp ++llayl++g+ +f+vm++lge+a+ +p+sg+f  ya+++lgp +Gf +G+ y f  ++v+ +++ta +
   CTQ27173.1  17 HIRFIALGSAIGTGLFYGSASAIKAAGP-AVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFG 113
                  8889************************.99******************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivg.iillaggkpnkga.gfrflgdngsifknnlppgfakee 194
                  i++++w  ++d+p  w++++ +++++ ++nl++v+v+ge+ef+l+l+k++aiia+++ g  i+ +g + +  a g+++l+++g+    + p+g     
   CTQ27173.1 114 IYMGLW--YPDVP-RWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGaGIIFFGFGHSFPAtGLENLWSHGG----FAPNG----- 199
                  ******..*****.*********************************************855566665555557**********....77777..... PP

  AA_permease 195 egafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlapli 292
                      +++i+ + iv+faf G e+++++a+E+kdP+k iP ai+ + +ri++fYv+ l+++++++p+n+ g         spfv+++  +g++++a+++
   CTQ27173.1 200 ---WQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQG------SPFVLIFDGLGIPAAATIL 288
                  ...99***************************************************************77666......9****************** PP

  AA_permease 293 naviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrf 390
                  n+++++a +s++ns ++ a R++y ++k+glaPk ++++  +gvP++ ++++  + l+a++l++l ++  +vf  + +++a++++ vwl+i+ls+  +
   CTQ27173.1 289 NIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPE--QVFVLIASLAAFATVWVWLMILLSHFAM 384
                  ********************************************************************..**************************** PP

  AA_permease 391 Rkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrp 475
                  R+ l++++r  +++ f +++ p  + l+l+++ +++ +l+++a ++             +a++ +++++ ++ v+++ +v++   
   CTQ27173.1 385 RRGLSAEER--SQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETR-------------MALIAGLVWLGLLTVVWYARVRKTAL 454
                  *********..77******************************999.............89999999999999988888887765 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1  54.2   2.5e-45   2.2e-41       8     405 ..      20     423 ..      13     445 .. 0.85

  Alignments for each domain:
  == domain 1  score: 142.1 bits;  conditional E-value: 2.5e-45
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    ++++gs+ig+g f  +  ++ ++gpa++l ++i+  ++ ++v+ ++ E++ + p sg   +y+++  g++++f+++w+++f  v+v+ +  + a++
     CTQ27173.1  20 FIALGSAIGTGLFYGSasAIKAAGPAVLLAYLIGGAAV-FIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVA-LADVTAFG 113
                    89***********999988999***********99999.68889******99*********************************88.77788888 PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgg.gfssl......stetdt....ffpng 186
                     ++++++pd+   +w+++l    i+ ++ ++n+++++  + + ++l ++k++ ++++++ +g  ++ +g g+s++           +    f png
     CTQ27173.1 114 IYMGLWYPDVP--RWIWIL---SIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMML-AGAGIIFFGfGHSFPatglenL----WshggFAPNG 199
                    888889***95..456666...779999***********************75555555.5554444431333444555442....144559999* PP

  AA_permease_2 187 wpgvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvili 280
                    w+gv+++l+iv+++f+G+e + + + e+k   k +p ai+ + l ++++y+ +  +++++ p++++ + ++   ++ l f+ +g +++a+i++i++
     CTQ27173.1 200 WQGVIASLGIVMFAFGGVEIIGVTAAEAKDpkKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGS---PFVLIFDGLGIPAAATILNIIV 292
                    ***************************6655388********************************98554...799******************* PP

  AA_permease_2 281 alsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkr 376
                    + +++ ain+ ++g+ r+++ ++++g  P+ f+++  +g p+ ++++     l+ ++l +l+++  + +++s+++++ ++++l+++++ +  r+  
     CTQ27173.1 293 ISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGL 388
                    ***************************************************99999999************************************9 PP

  AA_permease_2 377 phlkr......pgkilvaiigalfllfllvalffp 405
                      ++r      + +++va + +l++  l++a   +
     CTQ27173.1 389 SAEERsqiafpIPFWPVAPLLTLLFMGLVIAVLGM 423
                    99999887766445888887766665555443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3318.00
//
Query:       CTQ27174.1  [L=158]
Description: putative UPF0098 class protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-39  132.8   0.1      1e-38  132.6   0.1    1.0  1  PBP       Phosphatidylethanolamine-binding protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.1   5.8e-43     1e-38       2     132 .]      14     157 ..      13     157 .. 0.93

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 5.8e-43
                 --GGG.......CSBGGS-EEEEES--TTSSEEEEEEEETTSCCTCTTEEEEEEEEEETTSSEE-TTC...........EE-B-TTSSCCCCS---B-- CS
         PBP   2 lpkky.......egentsPplswsdvpegtksyalvviDpDapkvsetflHwvvtnipasvtslpega...........vqgknslgeesesgYlgpcP 82 
                 lp+++       +g+n+sP+l w+dvp+gtks++++++DpDap+ s+ ++Hwvv+n+pa+++ lp+ga           vq ++++g+   +gY+g++P
  CTQ27174.1  14 LPNRHvfngmgyDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSG-WWHWVVANLPADTRVLPQGAgsgqaelpeeaVQTRTDFGK---AGYGGAAP 108
                 566644455566999****************************8888.******************999999*****99********9...******** PP

                 STTS..EEEEEEEEEESSSG--BGSS-SHHHHHHHHCTTEEEEEEEEEEE CS
         PBP  83 pkgdgkHrYvfllyaldvealdlkagftraelgaaiaghvlakatlagnY 132
                 pkg+ +HrY+f+++aldve+ +++a+++ a +g++++ h+la+a++++ +
  CTQ27174.1 109 PKGE-THRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALF 157
                 ****.6**************999***999******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1157.55
//
Query:       CTQ27175.1  [L=429]
Description: 7,8-diaminopelargonic acid synthase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.7e-127  423.3   0.0   8.7e-127  423.1   0.0    1.0  1  Aminotran_3      Aminotransferase class-III
     0.0045   16.3   0.0     0.0069   15.7   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.036   14.0   1.7         12    5.9   0.1    3.1  3  DUF3652          Huntingtin protein region


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  423.1   0.0  1.5e-130  8.7e-127      10     405 ..      26     420 ..      17     421 .. 0.96

  Alignments for each domain:
  == domain 1  score: 423.1 bits;  conditional E-value: 1.5e-130
                  CEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHH CS
  Aminotran_3  10 llvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKla 107
                  ++ +  a+G+ l  + g++++D +ss++++++G++hP++++a+k q++++shv+fg +t+ pa++l+++l++++p +l++vfla+sGs Ave+A+K+a
   CTQ27175.1  26 VYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMA 123
                  477899******************************************************************************************** PP

                  HHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-S.CETT CS
  Aminotran_3 108 rkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEp.iqge 204
                   +y ++k  + + ++++f++++HG+t+ga+sv+++++ +++l++  lp+  ++++p+     + +e++++ +  + +l +++  e+aAvi+Ep +qg+
   CTQ27175.1 124 LQYWQAK-GEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQ---SRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPiVQGA 217
                  **77776.666779******************************************7...556789999999************************** PP

                  TTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTS.....B--TTTT-HH CS
  Aminotran_3 205 gGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgs.....hgsTfgGnpl 296
                  gG+ ++ pe+l+++r++c+++++lli+DE++tGfGrTGklfA+ehag+++D+++l+KaltgG ++lsa+++t+ v++++++g+     hg+Tf+Gnpl
   CTQ27175.1 218 GGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGtMTLSAAITTRTVAETISNGEagcfmHGPTFMGNPL 315
                  ************************************************************************************************** PP

                  HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---TT--HHH CS
  Aminotran_3 297 acavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGdnvirllppliitdee 394
                  acava ++l+++e  +++ ++++++a+l+++L ++  +   +++vR +G+++++e+  ++++   ++   + e+Gv+i+++G ++i+l+pp+iit e+
   CTQ27175.1 316 ACAVASESLRLLESGEWQPQVAAIEAQLQAELAPARGSA-LVADVRVLGAIGVVETRRPVNMA--ALQRFFVEQGVWIRPFG-RLIYLMPPYIITPEQ 409
                  ************************************887.*********************66..788889***********.*************** PP

                  HHHHHHHHHHH CS
  Aminotran_3 395 idelleilkka 405
                  +  l+ ++++a
   CTQ27175.1 410 LTRLTRAVNQA 420
                  ***99999887 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-06    0.0069      50     167 ..     106     245 ..      84     247 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-06
                      EEEES-HHHHHHHHHHHH--TTEEEEEETT......-HHHHSSTTHHHHC.C--EEEEE-EBTT.................TBE-HHHHHHHS- CS
  Beta_elim_lyase  50 alfvpqGtaAnsillkillqrgeevivtep......ahihfdetgaiael.agvklrdlknkea.................Gkmdlekleaaik 119
                      ++ + +G  A ++++k+ lq ++++   ++      + +h d+ ga+++   +  ++ l +                     +md+  ++++++
       CTQ27175.1 106 VFLADSGSVAVEVAMKMALQYWQAKGEPRRrfltfrNGYHGDTFGAMSVCdPQNSMHSLWQGYLpdnlfapapqsrfdgewDEMDMVPFARLMA 199
                      4455577777777777777777776555555555544444444455555442333333333222556677777888888888999999999999 PP

                      -S-TTS-EEEEEEEESSBTTTTT.B---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 120 evgaheekiklisltvTnntagG.qvvsleelrevaaiakkygiplhlD 167
                      +   h+ +i++++l+  ++ agG +++ +e+l++v+++++++gi l+ D
       CTQ27175.1 200 A---HRHEIAAVILEPIVQGAGGmRMYHPEWLKRVRKMCDREGILLIAD 245
                      9...999****************6699*****************99988 PP

>> DUF3652  Huntingtin protein region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.003        18       3      29 ..      83     109 ..      83     109 .. 0.88
   2 ?    5.9   0.1     0.002        12      17      35 ..     195     215 ..     194     216 .. 0.92
   3 ?   -0.7   0.0      0.23   1.4e+03      16      30 ..     258     272 ..     256     281 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.003
     DUF3652   3 igiPrIiqLcdglmASgqpalrheipa 29 
                 i++P    Lc+ l A + ++l ++ +a
  CTQ27175.1  83 ITHPPAVALCRQLVAMTPASLECVFLA 109
                 67777788***************9886 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.002
     DUF3652  17 ASgqpalrheipal..rpivq 35 
                 A++ +a rhei a+  +pivq
  CTQ27175.1 195 ARLMAAHRHEIAAVilEPIVQ 215
                 788899********99****8 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.23
     DUF3652  16 mASgqpalrheipal 30 
                  A + ++++ +i++l
  CTQ27175.1 258 FACEHAGITADILCL 272
                 588999*******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3178.77
//
Query:       CTQ27176.1  [L=346]
Description: biotin synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.7e-21   73.7   0.0    2.4e-20   72.4   0.0    1.7  1  BATS         Biotin and Thiamin Synthesis associated domain
    5.5e-19   69.2   0.0    4.7e-18   66.1   0.0    2.3  2  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> BATS  Biotin and Thiamin Synthesis associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   2.7e-24   2.4e-20       1      85 [.     220     310 ..     220     311 .. 0.98

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 2.7e-24
                 E--B----TCCCC...........HHHHHHHHHHSTTSE.CCCTCHH-HHHHHH.HHHCCT--EEE-C---TTTGGGSESSTT-TCCCCHHHHHHTT- CS
        BATS   1 siprlrpikdtpl...........lkiiaalRlllPkag.illsgResaefrdq.lllklGansisagsktevggyaflttdgrsleedvkmleelGl 85 
                 +i++l+++k+tpl           +++ia++R+++P++  +l++gRe++++++q +++++Gansi++g k       +ltt++ + ++d++++++lG+
  CTQ27176.1 220 PINMLVKVKGTPLadnddvdafdfIRTIAIARIMMPTSYvRLSAGREQMNEQTQaMCFMAGANSIFYGCK-------LLTTPNPEEDKDLQLFRKLGI 310
                 8********************************************************************9.......*******************96 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   5.2e-22   4.7e-18       4     160 ..      50     202 ..      47     209 .. 0.90
   2 ?    0.4   0.0     0.086   7.7e+02      55      94 ..     229     268 ..     221     343 .. 0.63

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 5.2e-22
                  ESEESS--TTTSCCTT.HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHG..HHHHHHHH CS
                  xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
  Radical_SAM   4 trgCnlrCsfCarpet.vrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpd..eeklerll 98 
                  t +C+ +C++C+++   +   + +r + ve++le ++++ ++ g   + +g    + +++   +le+++k       + +e++ tl +  + +++rl+
   CTQ27176.1  50 TGACPEDCKYCPQSARyKTGLEAERLMEVEQVLESARQA-KNAGSTRFCMGAAWKNPNDRDMPYLEQMVKG---VKALGLESCMTLGTltDSQAQRLA 143
                  679***********999999999****************.7***999999999999999888999999996...8999999999998899******** PP

                  HTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  99 elgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeel 160
                  e+g+d+++++l++  ++ + +++  + t++e+l++l+k r+agik v+++ +++ Ge+ +++
   CTQ27176.1 144 EAGLDYYNHNLDTSPEF-YGNII-TTRTYQERLDTLDKVRDAGIK-VCSGGIVGLGESVKDR 202
                  *****************.*****.99*******************.6777777777777765 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.086
                  STGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHG..HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
  Radical_SAM  55 gepllypdfvellerlaklavpgiritvetngtlpd..eekl 94 
                  g+pl++ d v++ + ++ +  +  ri + t++++++  +e++
   CTQ27176.1 229 GTPLADNDDVDAFDFIRTI--AIARIMMPTSYVRLSagREQM 268
                  6677777777777777666..566666666666665553333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2762.41
//
Query:       CTQ27177.1  [L=385]
Description: 8-amino-7-oxononanoate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-61  208.6   0.0    1.7e-61  208.4   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    1.8e-06   27.5   0.0    4.5e-06   26.1   0.0    1.6  1  Beta_elim_lyase  Beta-eliminating lyase
    5.4e-05   22.3   0.0    0.00011   21.3   0.0    1.4  2  Aminotran_5      Aminotransferase class-V
      0.005   15.4   0.0     0.0071   14.9   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
     0.0087   15.7   1.1      0.024   14.3   0.7    1.9  2  AA_kinase        Amino acid kinase family
  ------ inclusion threshold ------
      0.041   13.2   2.2       0.16   11.2   2.1    1.9  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.4   0.0   5.7e-65   1.7e-61       2     363 .]      40     380 ..      39     380 .. 0.97

  Alignments for each domain:
  == domain 1  score: 208.4 bits;  conditional E-value: 5.7e-65
                    EEEESSSSSTTSTTSSHHHHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgde 95 
                     ++n++sn+ylg+s++p + +++++ +   g++agg+ + +g ++ + +leeala++lg          +a++++sG+ a+++++++l +  ++d+
     CTQ27177.1  40 RWLNFSSNDYLGLSQHPAIIAAWQQGATryGVGAGGSGHVSGYSEAHRALEEALADWLG--------YPRALLFISGFAANQALIAALVE--KDDR 125
                    579*************9999999999889******************************........777*********99988888887..**** PP

                    EEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTT CS
  Aminotran_1_2  96 ilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYa 191
                    i+++++++as  +++ ls ++++r+        h+d ++l ++l++  +g++   + ++e++++++G+ a+l+ +++    +++ +++l+vD+a++
     CTQ27177.1 126 IVADRLSHASLLEAASLSPAQLRRFT-------HNDPQQLAQLLAKPLAGEQ---LAVTEGIFSMDGDSAPLAAIHAA---TQAAGAVLLVDDAHG 208
                    **************************.......*************999999...***********************...9999*********** PP

                    TCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHH CS
  Aminotran_1_2 192 gfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqs..eleemrqrlqkrr 285
                    ++v g+++  + +a  + +p+ l+v +++KafG+ G   +++l+++a++++l +++r++++s+++++a a als+al++++  e +++r+ l++r 
     CTQ27177.1 209 VGVVGDEGRGS-CAAQAVRPE-LLVVTFGKAFGVSG---AAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALRIIRsdEGQQRRDILAARI 299
                    *****997666.999999999.99************...***************************************99999************* PP

                    HHHHHHHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS...TTEEEEEC.TTS-HHHHHHHHHHH CS
  Aminotran_1_2 286 kelrdeLaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftv...pgrlRitv.Aglteeeleelveal 363
                    +++r+++ e  l  ++s s++ +l ++++++a  l+  L++  g++ t+++++tv   ++rlR+t+ A++ +e++++l+e l
     CTQ27177.1 300 RQFREGMGEVSLGLTDSVSAIQPLIVGNNARALNLACRLRDA-GCWATAIRPPTVpvgSARLRLTLtAAHHAEDINRLLEVL 380
                    ******************************************.***************9*******************9975 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   1.5e-09   4.5e-06      29      90 ..      81     142 ..      74     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.5e-09
                      T--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHH CS
  Beta_elim_lyase  29 gedktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdetgai 90 
                      g ++  ++Le+a+a+ +g+  al + +G aAn+ l+++l+++ + +++++ +h    e+  +
       CTQ27177.1  81 GYSEAHRALEEALADWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASL 142
                      6788899**********************************************998887654 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.8e-08   0.00011      38     181 ..      80     210 ..      52     212 .. 0.80
   2 ?   -4.0   0.0       1.8   5.3e+03     254     270 ..     269     286 ..     266     300 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.8e-08
                  HHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH CS
  Aminotran_5  38 gkeatkaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekl 135
                  +   ++a ++ +e +a++++ +    ++f+sG + a+++ + +l   ++++d+iv  ++ h + l    e+a    a+++ ++ ++ ++l  + l+k 
   CTQ27177.1  80 SG-YSEAHRALEEALADWLGYPR--ALLFISGFA-ANQALIAAL---VEKDDRIVADRLSHASLL----EAASLSPAQLRRFTHNDPQQLA-QLLAKP 165
                  33.5788899999*********6..*******99.888888888...9*************9999....6666778999999998888887.666677 PP

                  --TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTT CS
  Aminotran_5 136 lnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavg 181
                  l+ + +l     + ++ G   p+++i ++ +++ga++lvD a +vg
   CTQ27177.1 166 LAGE-QLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVG 210
                  7554.5666788999************99999********998875 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.8
                  -HHHHHHHHHHHHHH.HC CS
  Aminotran_5 254 nvagiiglgaaleyl.ee 270
                  + a++++l+aal+++ ++
   CTQ27177.1 269 PPAQAVALSAALRIIrSD 286
                  568899999999988433 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.4e-06    0.0071      54     175 ..      86     206 ..      82     213 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.4e-06
                      HHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS- CS
  Cys_Met_Meta_PP  54 rsvleeriaaLeggeaalavssGmaAiaaailallkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtpt 147
                      +++lee++a+  g  +al++ sG aA +a i al+++ d+iv+++  + +  +  +   +    ++++ d+++l++l ++     +l  +E + 
       CTQ27177.1  86 HRALEEALADWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLS-PAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIF 178
                      689**************************************99876554433333322.22223455555555555555544555666667777 PP

                      TTTT----HHHHHHHHHHTT-EEEEEGT CS
  Cys_Met_Meta_PP 148 npllkvvDiekiaklakkagvlvvvDnt 175
                      +   + + +++i +++++ag++++vD +
       CTQ27177.1 179 SMDGDSAPLAAIHAATQAAGAVLLVDDA 206
                      7777777777777777777777777665 PP

>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.7   7.9e-06     0.024      26     185 ..      58     209 ..       4     216 .. 0.70
   2 ?   -3.2   0.0       1.7   5.1e+03      94     132 ..     259     300 ..     253     309 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.9e-06
                 HHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC........E..HHHHHHHHHHHHHHHHH...HHHHHHHHTTH..GEEEE-GGGTCEECCCE CS
   AA_kinase  26 qiaalkesgnklvvVhGggsftdgllalksglssgelaa....glrstleeagevatrdalaslge...rlvaallaagl..pavglsaaaldateagr 115
                 +iaa+++   +  v  Gg++ + g++++ + l++    a      r  l + g++a+++++a+l e   r+va  l+++   +a +ls+a+l       
  CTQ27177.1  58 IIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEAL--AdwlgYPRALLFISGFAANQALIAALVEkddRIVADRLSHASllEAASLSPAQLRR----- 149
                 444443333444555555555555555522232222..13576456677888888888888888887777888777655334888888888884..... PP

                 ..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSC CS
   AA_kinase 116 degsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGV 185
                         +++d +++++ll++   p  ++  +++e   +  g+s  +aa+ A+   A  ++++ d +GV
  CTQ27177.1 150 -------FTHNDPQQLAQLLAK---PLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGV 209
                 .......467889999999988...777776666666668889999***********************9 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.7
                 HHTTHGEEEE-GGGTCEECCCE.....HHHTTTCEEECCHHH CS
   AA_kinase  94 laaglpavglsaaaldateagr...degsdgnvesvdaeaie 132
                 +++++ +  +++a+  a +a     +  + ++++ + a+ i+
  CTQ27177.1 259 ARHLIYSTAMPPAQAVALSAALriiRSDEGQQRRDILAARIR 300
                 566777777777777666666656655555555555555555 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.1   5.4e-05      0.16      23     156 ..      84     217 ..      73     269 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.4e-05
                      HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EE.EEE-B-TTTSS.B-GGGCGGG--TTEEE CS
  DegT_DnrJ_EryC1  23 peveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakp.vfvDvdpdtyn.idpaaieaaitertka 114
                      +  +++E+a+a+ lg   a+ + sG aA++ ++ al v+++d ++   l+ ++  +a++ + a+   f   dp+++  + ++ ++      t +
       CTQ27177.1  84 EAHRALEEALADWLGYPRALLFISGFAANQALIAAL-VEKDDRIVADRLSHASLLEAASLSPAQLrRFTHNDPQQLAqLLAKPLAGEQLAVTEG 176
                      56789***********************99777666.777******************999887525777777665312222222222344566 PP

                      EEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT.-EETTE CS
  DegT_DnrJ_EryC1 115 IlpVhlyGqvadmdalkaiaakhglkvieDaAhAlG.atykgk 156
                      I+   + G++a ++a+ a  ++ g +++ D Ah++G    +g+
       CTQ27177.1 177 IF--SMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGvVGDEGR 217
                      66..5779*************************9993334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3012.86
//
Query:       CTQ27178.1  [L=251]
Description: putative methltransferase, enzyme of biotin synthesis [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-23   83.6   0.0    2.4e-23   82.6   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
      5e-18   65.6   0.0      1e-17   64.6   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    6.6e-14   52.1   0.0    9.3e-14   51.6   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    1.3e-10   41.3   0.0    1.8e-10   40.8   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
      6e-10   39.8   0.0      1e-09   39.0   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
      2e-06   27.3   0.0    2.7e-06   26.9   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    7.3e-05   22.7   0.0    0.00012   22.0   0.0    1.3  1  Methyltransf_8   Hypothetical methyltransferase
     0.0016   18.1   0.1     0.0032   17.0   0.0    1.5  2  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.019   14.3   0.0      0.028   13.7   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
      0.059   11.9   0.0       0.08   11.5   0.0    1.1  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
      0.065   13.1   0.0      0.097   12.6   0.0    1.2  1  SPAR_C           C-terminal domain of SPAR protein
       0.12   12.5   0.0       0.18   11.9   0.0    1.4  1  FtsJ             FtsJ-like methyltransferase
       0.28   10.6   0.0       0.48    9.8   0.0    1.3  1  TehB             Tellurite resistance protein TehB


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   1.8e-26   2.4e-23       1      96 []      47     138 ..      47     138 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 1.8e-26
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      Ld+GcG G++++++ ++g+ v+++Dls+ ml++a+ +   ++    ++ +d+e lp++d+ +Dl +s+ ++++++d+++a+ e++Rv +pgG++
       CTQ27178.1  47 LDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQCNDAAQH----YLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAIGELYRVARPGGRV 136
                      8*********************************99999998....7*********************************************99 PP

                      EE CS
  Methyltransf_11  95 vi 96 
                      ++
       CTQ27178.1 137 AF 138
                      76 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   7.2e-21     1e-17       1      97 []      46     134 ..      46     134 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 7.2e-21
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      vLd+GcG+G +++++ +++  + vt++D+s++ml++a+ + +      +++ gd+e+lp++d+ +Dl +s+ a++++  +dl++a+ e++rv +
       CTQ27178.1  46 VLDAGCGPGSMSRYWREAG--SVVTALDLSAGMLAQAQCNDA----AQHYLLGDIEALPLPDACVDLAWSNLAVQWC--DDLRAAIGELYRVAR 131
                      9****************95..9****************9995....568*********************7667765..59************* PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      pgG
       CTQ27178.1 132 PGG 134
                      **9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   6.7e-17   9.3e-14       4     154 ..      25     174 ..      21     178 .. 0.85

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 6.7e-17
  Methyltransf_23   4 qreeelsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaae....pqgkfdlIvlrevle 93 
                      +++++++d+l+r l+ +r    vLd GcG G+++++ re g  vt+ Dls  + + a   +++   q++   + e    p++  dl+ ++    
       CTQ27178.1  25 ELQRRCADLLLRQLA-RRDFTQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQA---QCNDAAQHYLLGDIEalplPDACVDLAWSNLAVQ 114
                      56899*******998.9*********************************9888876...5555555533322224445999************ PP

  Methyltransf_23  94 hvpdppellrqiatllkpgGylllseplaslkedrllldwlylvpagrhi.sffsarslkel 154
                      + +d+ +++  +++  +pgG++ +s+ la+ +  +l + w++++++  h  +f s+ +++ +
       CTQ27178.1 115 WCDDLRAAIGELYRVARPGGRVAFSTLLAD-SLPELNQAWQAIDDR-PHAnRFLSEAAVRAA 174
                      ****************************97.9999999*****999.666477787776655 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   1.3e-13   1.8e-10       5     123 ..      44     151 ..      41     186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1.3e-13
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeie 98 
                      ++vlD+GCG G  +  +  e+g  + v+ +D s+ ++ +A+ n + + +       gdie+l+  l d+++Dl  sn +++   d+ ++++e+ 
       CTQ27178.1  44 TQVLDAGCGPGSMSRYWR-EAG--SVVTALDLSAGMLAQAQCNDAAQHY-----LLGDIEALP--LPDACVDLAWSNLAVQWCDDLRAAIGELY 127
                      69****************.765..5799*************97666666.....58*******..9**************************** PP

  Methyltransf_31  99 rvlkpggilliedprllaelpakve 123
                      rv +pgg+++ ++   ++ lp+  +
       CTQ27178.1 128 RVARPGGRVAFSTLL-ADSLPELNQ 151
                      *********999887.555554444 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   7.3e-13     1e-09       1      99 []      47     136 ..      47     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 7.3e-13
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      L+ GcG Gs++r+++e+  ++ +t++D+s+ ++++a+   a+++       ++eal l d      +Dl +++ ++++++d+r+++ +++++ +
       CTQ27178.1  47 LDAGCGPGSMSRYWREA--GSVVTALDLSAGMLAQAQCNDAAQHY---LLGDIEALPLPDA----CVDLAWSNLAVQWCDDLRAAIGELYRVAR 131
                      89***************..**************444444444443...4444444444433....9**************************** PP

  Methyltransf_12  95 pgGrl 99 
                      pgGr+
       CTQ27178.1 132 PGGRV 136
                      ***85 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.9e-09   2.7e-06      40     168 ..      35     155 ..       2     168 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.9e-09
                      HHH--S--TTEEEEES-TT-HHHHHHHHHHHHHH.EEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-H CS
  Ubie_methyltran  40 eklvavkrgakvlDvagGtgDlafklsdsvgekg.kvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDk 132
                       +  a +  ++vlD  +G g +    s+  +e g  v+ lD+++ mL +++   ++ ++   ++l ++ e+Lp  d   D+      ++   D 
       CTQ27178.1  35 LRQLARRDFTQVLDAGCGPGSM----SRYWREAGsVVTALDLSAGMLAQAQ--CNDAAQ---HYLLGDIEALPLPDACVDLAWSNLAVQWCDDL 119
                      445566677799******9975....56666667245689*******8765..445444...69****************************** PP

                      HHHHHHHHHHEEEEEEEEEEEE----SHHHHHHHHH CS
  Ubie_methyltran 133 lkaLkeayrvlkpGGrlvvlefskvelpllsqayel 168
                        a+ e+yrv +pGGr+    +    lp l+qa+++
       CTQ27178.1 120 RAAIGELYRVARPGGRVAFSTLLADSLPELNQAWQA 155
                      ****************99877777777777777765 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   8.5e-08   0.00012      60     155 ..      31     137 ..      18     154 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 8.5e-08
                     HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-...EEEEESS-..........SSTTEEES-TTS-S--TT-EEEEEEES---.SS-HHHHHH CS
  Methyltransf_8  60 ldviirklkkkkdnlvvadlGcGeakiaeavrekek.vrsfdlva..........vnervvacdlakvPledesvdvavfclslm.gtnladflk 142
                      d ++r+l +++  + v d GcG   ++   re    v ++dl a            ++    d+  +Pl d  vd+a   l++   ++l+  + 
      CTQ27178.1  31 ADLLLRQLARRDF-TQVLDAGCGPGSMSRYWREAGSvVTALDLSAgmlaqaqcndAAQHYLLGDIEALPLPDACVDLAWSNLAVQwCDDLRAAIG 124
                     5778888877765.5678**********888887552689**9873332222111234556679******************9853799****** PP

                     HHHHHEEEEEEEE CS
  Methyltransf_8 143 eanrvlkvGGllk 155
                     e +rv ++GG + 
      CTQ27178.1 125 ELYRVARPGGRVA 137
                     **********865 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.3e-06    0.0032      20      77 ..      31      86 ..      18      97 .. 0.87
   2 ?   -3.5   0.0       4.8   6.7e+03     119     139 ..     168     188 ..     161     201 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.3e-06
                HHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHH CS
         MTS 20 sklLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenlea 77
                ++lLl++l  +   +vlD GcG G ++    ++ +   vt++d +a  l+ a+ n +a
  CTQ27178.1 31 ADLLLRQLARRDFTQVLDAGCGPGSMSRYWREAGSV--VTALDLSAGMLAQAQCNDAA 86
                789********9999************999887776..99999999999999887665 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.8
                 HHHHHHHHHHEEEEEEEEEEE CS
         MTS 119 eeliaeAkeaLkegGeLliVa 139
                 e+ +++A + L+ +Ge   + 
  CTQ27178.1 168 EAAVRAALSGLRATGEVHQIS 188
                 556677777777777766555 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.1e-05     0.028      44     102 ..      24      81 ..       9      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH CS
        CMAS  44 eeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklak 102
                 +e q++  dl+l++l  ++  ++Ld GcG Gs+ r+  e  +  v +l lS+   ++a+
  CTQ27178.1  24 DELQRRCADLLLRQLARRDFTQVLDAGCGPGSMSRYWREA-GSVVTALDLSAGMLAQAQ 81 
                 6889999**************************9998887.999999999987766655 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.8e-05      0.08     114     237 ..      39     156 ..      11     163 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.8e-05
  Methyltransf_29 114 aggkvrtvlDvGCgvasfgayllsrdvltlslapkDeheaqvqfaLeRgvpailavlgt.krlpyPsrsfdlihCsrCridwteedgilllevd 206
                      a     +vlD GCg  s++ y  + + +  +l       aq q        a   +lg  + lp P +  dl+  s   ++w ++  + + e+ 
       CTQ27178.1  39 ARRDFTQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQCND----AAQHYLLGDiEALPLPDACVDLAW-SNLAVQWCDDLRAAIGELY 127
                      45567799*************9998766556666666666666532....3444455542579*********96.8899*************** PP

  Methyltransf_29 207 RvlRpgGyfvlsappvyerkeeelkeeqkel 237
                      Rv RpgG  ++s+  +   +  el++ ++++
       CTQ27178.1 128 RVARPGGRVAFSTLLAD--SLPELNQAWQAI 156
                      *******9999986554..334555666555 PP

>> SPAR_C  C-terminal domain of SPAR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.1e-05     0.097     139     172 ..      77     111 ..      55     114 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.1e-05
      SPAR_C 139 lsltdlrdk.kklrlldPgLmPLPdtaadLdWssL 172
                 l  ++ +d  ++  l d + +PLPd+  dL Ws+L
  CTQ27178.1  77 LAQAQCNDAaQHYLLGDIEALPLPDACVDLAWSNL 111
                 44444445434445678999**************9 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00013      0.18      22      58 ..      43      80 ..      21     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                T-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS....H CS
        FtsJ 22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm....a 58
                 ++v+D g++PG+ s +  +  g  ++v a+Dl  +    a
  CTQ27178.1 43 FTQVLDAGCGPGSMSRYWREA-G--SVVTALDLSAGmlaqA 80
                367***************999.5..79******87756542 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00034      0.48      32      66 ..      44      78 ..      35     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00034
                -EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHH CS
        TehB 32 gkvldlgcgqgrnslylsllgydvtawdknensia 66
                ++vld gcg g  s y    g  vta+d  +  +a
  CTQ27178.1 44 TQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLA 78
                579*************************8776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2046.16
//
Query:       CTQ27179.1  [L=240]
Description: dethiobiotin synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-37  127.8   0.0    5.7e-37  127.5   0.0    1.0  1  AAA_26    AAA domain
    1.4e-12   47.8   0.0    1.7e-12   47.5   0.0    1.1  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
    0.00035   19.9   0.2     0.0048   16.2   0.1    2.3  2  DUF1611   Domain of unknown function (DUF1611_C) P-loop domai


Domain annotation for each model (and alignments):
>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.5   0.0   9.6e-41   5.7e-37       2     195 ..       4     211 ..       3     213 .. 0.95

  Alignments for each domain:
  == domain 1  score: 127.5 bits;  conditional E-value: 9.6e-41
      AAA_26   2 tifvtgtdtgvGKTvvslgLvralkrkgvkvgyfKPiqtgie......ededselikellgldqtyelpeplalsaplspelaarqegedidlekiv.. 92 
                 ++fvtgtdt+vGKT+ s +L++a +  g+ ++ +KP+++g+e      ++ed+  +++  ++   y+  +p+++++p sp++ +++eg+ i+ +++   
  CTQ27179.1   4 RFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSEltgdglRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSsg 102
                 78****************************************88888888899999**9999999***************************9999989 PP

      AAA_26  93 .kelekdadivvVEGagglgvpiteellnadiaknlgapvilVargglgtinqllltiealrqknvrvlGvilNkvrnp.....envetlekksgipvl 185
                  +ele  ad v+VEGagg  +p+++ l+ ad a++ ++pvilV+ ++lg in+++lt++a+rq +++++G i+N v++p     e ++tl++    p l
  CTQ27179.1 103 lRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPgkrhaEYLATLKNRLAAPFL 201
                 99**************************************************************************99988776688999999999*** PP

      AAA_26 186 GvvPylpdle 195
                 G++P+l+d+ 
  CTQ27179.1 202 GEIPWLADIA 211
                 ******9975 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   2.8e-16   1.7e-12       2     122 ..       6     214 ..       5     220 .. 0.95

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 2.8e-16
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE.EEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   2 aiastkGGvGKTtlaanLaralarrglrVllvD.aDpqannlaileglendiep............................................. 54 
                 ++++t  +vGKT  + +L++a +  g++++ ++ +   ++++   +gl+n+ +                                              
  CTQ27179.1   6 FVTGTDTEVGKTIASSALLQAANLLGFHTAGYKpVASGSELTG--DGLRNEDALalqrhsrvalrydqvnpytfaeptsphiisadegrpiaaarlssg 102
                 699******************************8888877777..9****9999********************************************* PP

                 ............................................CCHCCCHHHHHHCHCHHHH.....EEEEEEEEESS...-TTCHHHHHHHHHHCTS CS
                 ............................................xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ............................................dlkrllellealgkkkall...lkiagvvlnrvdgeneetllkealeelkqrygv 106
                                                             ++k  +++ +a+ + +a+    l +ag+++n v+++   +++ e l++lk r++ 
  CTQ27179.1 103 lrelegladwvlvegaggwftplsdsltfadwaqaeqlpvilvvGVKL-GCINHAMLTAQAVRqagLPLAGWIANDVQPP--GKRHAEYLATLKNRLAA 198
                 *******************************************99976.999999999999999****************..***************** PP

                 -EEEEEE--CCHCCCC CS
                 xxxxxxxxxxxxxxxx RF
        CbiA 107 pvlgviprdeavaeap 122
                 p+lg+ip+  ++a+ +
  CTQ27179.1 199 PFLGEIPWLADIAQRD 214
                 ********99998765 PP

>> DUF1611  Domain of unknown function (DUF1611_C) P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1     8e-07    0.0048      12      44 ..       2      34 ..       1      52 [. 0.91
   2 ?    1.1   0.0     0.033     2e+02      87     106 ..     109     128 ..      94     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8e-07
     DUF1611 12 akrvlvvGTdcavGKrttaleleealeerGlka 44
                +kr +v GTd +vGK +++ +l +a++  G+ +
  CTQ27179.1  2 TKRFFVTGTDTEVGKTIASSALLQAANLLGFHT 34
                5899***********************999876 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.033
     DUF1611  87 epdlilveGQgsLthpaysg 106
                  +d++lveG g+ + p    
  CTQ27179.1 109 LADWVLVEGAGGWFTPLSDS 128
                 469********998887555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 2062.22
//
Query:       CTQ27180.1  [L=240]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-22   78.7   0.0    1.1e-21   77.8   0.0    1.5  2  ABC_tran     ABC transporter
     0.0031   17.9   0.1     0.0053   17.2   0.1    1.5  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.026   14.8   0.5        0.2   11.9   0.5    2.0  1  AAA_22       AAA domain
      0.035   14.0   0.0      0.051   13.5   0.0    1.2  1  RsgA_GTPase  RsgA GTPase
      0.082   12.5   0.0       0.23   11.0   0.0    1.7  2  AAA_25       AAA domain
       0.22   11.6   0.0       0.36   10.9   0.0    1.3  1  MMR_HSR1     50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   3.6e-25   1.1e-21       3     136 ..      19     165 ..      17     166 .. 0.89
   2 ?   -2.9   0.1         3     9e+03     127     135 ..     220     228 ..     217     229 .. 0.81

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 3.6e-25
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET..TCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilld..gkdlke....qeleslrkeigvlpqepqlfpeltvren..........esdeei 85 
                 nv+l l++ge+++++G+ G GK+tL++++ag+l  ++G++++   g++ ++       +++   ig++pq++++f++l+v+en           +++  
  CTQ27180.1  19 NVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHdiGAPPQDltplSAQSRSAIGIGYVPQDKRIFSQLSVEENlhialaagkpGANASG 117
                 899*************************************998677888889988888999999************************99988666667 PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  ++ +++   +   ++   +++sLS   +  +alaral+ +p+ll+lDEp+
  CTQ27180.1 118 GEIYEHFPELYALRQR---KGASLSDDDQYQLALARALIVQPRLLILDEPS 165
                 7778888766644444...479****************************6 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3
                 SSEEEEEST CS
                 xxxxxxxxx RF
    ABC_tran 127 pkllllDEp 135
                  +++ lDEp
  CTQ27180.1 220 GDIMALDEP 228
                 57999***9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.8e-06    0.0053      24     106 ..      26     107 ..      19     193 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.8e-06
      AAA_16  24 p.elvllsGesGvGKsslvrellralekd....ggif..lrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala 106
                 p e++ + G  G+GK++lv++++ +l  +       +  + +  ++l   +p+sa   +a+     +  + ++++  ++    e l+ ala
  CTQ27180.1  26 PgECIGVLGREGMGKTTLVNCIAGHLPVAsgrmT--WhdIGAPPQDL---TPLSAqSRSAI-G---IGYVPQDKRIFSQLSVEENLHIALA 107
                 338999*****************98887743221..23466666666...77765555555.4...4444444444444444444555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   6.7e-05       0.2       6     127 ..      28     193 ..      24     201 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.7e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.....................................erpevvfvtlpsst.....sskdllrellr 62 
                  ++ v G  G+GKTtl++ ++  l+ ++   +                                        e +++ l++++     s  ++++++ +
  CTQ27180.1  28 ECIGVLGREGMGKTTLVNCIAGHLPVASGRMTwhdigappqdltplsaqsrsaigigyvpqdkrifsqlSVEENLHIALAAGKpganaSGGEIYEHFPE 126
                 577899***************999866555448999999999999998777777777776666666555222222333333333345666777777777 PP

      AAA_22  63 alglelkaerlsseellealeqalrarav.ielliiDEaqhlrs...eealeeLrsllnlsrkgvqliL 127
                  + l++ + ++s+++  ++    +ra  v ++lli+DE  + r     + l +L  +ln ++ g++++L
  CTQ27180.1 127 LYALRQRK-GASLSDDDQYQLALARALIVqPRLLILDEPSRGRGprcLQKLADLLLRLN-RDIGLTVLL 193
                 77776666.33333333333333333333566999999888753124444444444444.455555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.7e-05     0.051      93     127 ..      20      55 ..       2      63 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
                  HHHHCTT.SEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  93 lkellkd.ktsvlvGqSGvGKStLinallpelelkt 127
                  +  +l+  +++ ++G  G+GK+tL+n ++++l ++ 
   CTQ27180.1  20 VDLVLRPgECIGVLGREGMGKTTLVNCIAGHLPVAS 55 
                  55556655778899**************99876655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.8e-05      0.23      24      61 ..      18      57 ..      13      71 .. 0.81
   2 ?   -3.0   0.0       1.5   4.5e+03     137     151 ..     150     164 ..     128     170 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.8e-05
      AAA_25 24 wlvkgllpagelallaGapgtGKttlaldlala..vatGk 61
                w v+ +l+ ge + + G++g GKttl+  +a +  va+G+
  CTQ27180.1 18 WNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHlpVASGR 57
                99999*********************99988762244666 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.5
      AAA_25 137 ieevegvrlvviDpl 151
                    + ++rl+++D  
  CTQ27180.1 150 RALIVQPRLLILDEP 164
                 333345888888865 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.36       2      22 ..      30      50 ..      29      60 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                ++++Gr   GK+tL+n + g 
  CTQ27180.1 30 IGVLGREGMGKTTLVNCIAGH 50
                89**************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1906.89
//
Query:       CTQ27181.1  [L=70]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       152  (0.00847788); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 534.84
//
Query:       CTQ27182.1  [L=673]
Description: excinulease of nucleotide excision repair, DNA damage recognition component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-32  109.0   0.0    2.3e-31  107.8   0.0    1.7  1  UvrB_inter     UvrB interaction domain
    1.8e-21   75.7   0.3    6.1e-21   74.0   0.0    2.1  2  UvrB           Ultra-violet resistance protein B
    5.9e-18   65.2   0.1    3.2e-17   62.9   0.1    2.2  2  Helicase_C     Helicase conserved C-terminal domain
    1.3e-10   41.5   0.1    2.8e-09   37.2   0.0    2.7  3  ResIII         Type III restriction enzyme, res subunit
    3.1e-07   29.9   1.6    8.4e-07   28.5   1.6    1.8  1  UVR            UvrB/uvrC motif
     0.0004   20.2   0.1       0.01   15.6   0.0    3.1  3  DEAD           DEAD/DEAH box helicase
    0.00072   19.3   0.0      0.016   14.9   0.0    2.5  2  AAA_30         AAA domain
     0.0035   17.7   0.1        2.4    8.5   0.0    2.8  2  AAA_19         AAA domain
  ------ inclusion threshold ------
      0.037   14.1   0.0      0.095   12.7   0.0    1.7  1  UB2H           Bifunctional transglycosylase second domain
      0.053   13.0   1.0        7.3    6.0   0.0    2.5  3  UvrD-helicase  UvrD/REP helicase N-terminal domain
       0.72    9.1   3.5        1.6    8.0   0.3    2.4  2  CorA           CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   0.0   1.4e-34   2.3e-31       1      91 []     159     249 ..     159     249 .. 0.99

  Alignments for each domain:
  == domain 1  score: 107.8 bits;  conditional E-value: 1.4e-34
  UvrB_inter   1 lelkvgqkidreellrkLvelqYerndvelkrGtFrvrGdtveifpasaeevairieffgdeiesireidpltgkslekleeitifPakhf 91 
                 l+l+vg+ id++ +lr+L elqY+rnd+ ++rGtFrvrG+++++fpa++++ a+rie+f++e+e+++ +dpltg++  ++ ++ti+P++h+
  CTQ27182.1 159 LHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHY 249
                 89****************************************************************************************9 PP

>> UvrB  Ultra-violet resistance protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.8   4.6e+03       6      23 ..     256     273 ..     254     279 .. 0.78
   2 !   74.0   0.0   3.7e-24   6.1e-21       1      42 [.     552     593 ..     552     594 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.8
                 --HHHHHHHHHHHHHHHH CS
        UvrB   6 iTdSMkkAideTerRRei 23 
                 i ++M++   e  +RR++
  CTQ27182.1 256 IVQAMEEIKLELAERRKV 273
                 668899998999999986 PP

  == domain 2  score: 74.0 bits;  conditional E-value: 3.7e-24
                 EE-SS--HHHHHHHHHHHHHHHHHHHHHHHHT------XXXX CS
        UvrB   1 lYADkiTdSMkkAideTerRReiQeaYNeehgItPktikKki 42 
                 lY+DkiT SM kAi eTerRRe+Q++YNeehgI+P+ ++Kk+
  CTQ27182.1 552 LYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKV 593
                 8***************************************97 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.1   5.1e+03      16      53 ..      43      80 ..      35      91 .. 0.74
   2 !   62.9   0.1     2e-20   3.2e-17      11     109 ..     441     544 ..     431     546 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.1
                TSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHH CS
  Helicase_C 16 ggkilifvntidrlekvklllekkgikvavlhgelpqn 53
                 gk+  ++n i +l++ +++l  ++  +a l+ge++  
  CTQ27182.1 43 SGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEF 80
                67888888889988876666678889999999999875 PP

  == domain 2  score: 62.9 bits;  conditional E-value: 2e-20
                 HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.....SSHHHHHHH CS
  Helicase_C  11 kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.....rnvtsyiqr 103
                  ++++++++l+ + t++++e+ +++l e++g +v +lh+++ + er ei+++ + ge+dvL+  + + +G+d+p+v+lV ++d++     r+ +s+iq 
  CTQ27182.1 441 LRTAINERVLVTTLTKRMAEDlTEYL-EEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADkegflRSERSLIQT 538
                 367899*************9977777.7789******************************************************88888889****** PP

                 HTTSSS CS
  Helicase_C 104 iGRtgR 109
                 iGR++R
  CTQ27182.1 539 IGRAAR 544
                 *****9 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.7e-12   2.8e-09       7      85 ..      16      92 ..      10     139 .. 0.74
   2 ?    0.2   0.1       0.4   6.5e+02      43      81 ..     258     296 ..     255     320 .. 0.80
   3 ?   -1.4   0.0       1.3   2.1e+03     135     145 ..     334     344 ..     321     396 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.7e-12
                HHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG........G CS
      ResIII  7 yQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke....i 85
                 Q eai++l+e l+ ++  +  +   TG+GKT+++a++i+ l++      +++l+p+k+l  q++ e+k+f++e++ e     
  CTQ27182.1 16 DQPEAIRRLEEGLE-DGLAHQTLLGVTGSGKTFTIANVIADLQR-----PTMVLAPNKTLAAQLYGEMKEFFPENAVEyfvsY 92
                69***********9.999999999*******************9.....8***********************9875444442 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.4
                 HHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG. CS
      ResIII  43 klierllkkgkeekflflvprkslleqtleefkkflsea 81 
                 +++e+++ +  e++ ++l+++k l eq l++ ++f  e 
  CTQ27182.1 258 QAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEM 296
                 678888888889999************998877776555 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.3
                 EEEEETGGGTT CS
      ResIII 135 viiiDEaHrlg 145
                 +++iDE+H + 
  CTQ27182.1 334 LLVIDESHVTV 344
                 8999**99765 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   1.6   5.2e-10   8.4e-07       2      35 ..     634     667 ..     633     668 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 5.2e-10
         UVR   2 klikeLeeemeeAaenedFEkAAklRDqinalkk 35 
                 ++i eLe +m + a+n++FE+AA++RDq+ +l++
  CTQ27182.1 634 QKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRE 667
                 6899*************************99987 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.3e-06      0.01      19      74 ..      37      84 ..      15     142 .. 0.76
   2 ?   -1.5   0.0       1.1   1.8e+03     125     136 ..     335     346 ..     329     404 .. 0.55
   3 ?    0.2   0.0      0.33   5.4e+02      45     103 ..     444     502 ..     421     522 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.3e-06
                EEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 19 vaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyi 74
                + + TGsGKT   +  +   +       +  +++++P + La q + ++k+f+ + 
  CTQ27182.1 37 LLGVTGSGKTFTIANVIA-DL-------QRPTMVLAPNKTLAAQLYGEMKEFFPEN 84
                5678******99554444.44.......45679*******************9864 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
                 EEEETHHHHHHT CS
                 xxxxxxxxxxxx RF
        DEAD 125 lVlDEadrlldq 136
                 lV+DE +    q
  CTQ27182.1 335 LVIDESHVTVPQ 346
                 666766655444 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.33
                 STS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEE.EEETTSSHHHHHHHHHTT.CSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxx RF
        DEAD  45 ktgpkalivePtreLaeqtlnnlkkfkkyidlrvl.liiggvaardqlskldng.vdivvg 103
                   + ++l+ + t+ +ae+  + l++ ++   +r+l + i  v++ + +++l+ g  d++vg
  CTQ27182.1 444 AINERVLVTTLTKRMAEDLTEYLEEHGER--VRYLhSDIDTVERMEIIRDLRLGeFDVLVG 502
                 55567888888888888888888888886..455547799999999999998666999987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.8e-06     0.016       6      66 ..      17      77 ..      13     140 .. 0.75
   2 ?    1.4   0.0      0.14   2.2e+02      45      81 ..     445     481 ..     435     556 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.8e-06
      AAA_30  6 Qaaaveal...ltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeel 66
                Q +a+++l   l++g   ++l G+ G+GKt++++ + + ++   ++ ++lAp+++ A++L  e+
  CTQ27182.1 17 QPEAIRRLeegLEDGLAHQTLLGVTGSGKTFTIANVIADLQ---RPTMVLAPNKTLAAQLYGEM 77
                55555554333667778899************987765555...7899**********998665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.14
      AAA_30  45 aggrviglAptgkaAkvLaeelgieastiakllkrlk 81 
                  ++rv++ + t+++A++L+e l+ +++++  l +  +
  CTQ27182.1 445 INERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDID 481
                 3689999999999999999988877777766655444 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0015       2.4      14      40 ..      36      62 ..      30     154 .. 0.72
   2 !    6.0   0.1    0.0085        14      41      75 ..     445     486 ..     428     585 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0015
      AAA_19 14 lvtaGpGtGKTrvlkhivallvelggv 40
                 +++  G+GKT ++  ++a l++ + v
  CTQ27182.1 36 TLLGVTGSGKTFTIANVIADLQRPTMV 62
                578999*************99886643 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0085
      AAA_19  41 kpeeillvaftgrAakelrerlaalgae.......atTiHrl 75 
                   e++l+ ++t+r a+ l+e l++ g++       ++T+ r+
  CTQ27182.1 445 INERVLVTTLTKRMAEDLTEYLEEHGERvrylhsdIDTVERM 486
                 3389****************9977777744444445555554 PP

>> UB2H  Bifunctional transglycosylase second domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.9e-05     0.095       1      42 [.     161     202 ..     161     208 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.9e-05
        UB2H   1 LypGaalsaaqleqeLellgYrkvsnvtrpGeyavsgnriel 42 
                 L  G+ +++ ++ + L +l+Y +++++ + G+++v+g+ i++
  CTQ27182.1 161 LTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDV 202
                 678999*******************************99987 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0045       7.3      22      37 ..      41      56 ..      34      65 .. 0.89
   2 ?    5.2   0.0    0.0077        13      43      76 ..     444     477 ..     432     596 .. 0.86
   3 ?   -3.8   0.1       4.2   6.9e+03      64      90 ..     635     666 ..     612     670 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0045
                   TTSSHHHHHHHHHHHH CS
  UvrD-helicase 22 AGsGKTfvlaerilrl 37
                    GsGKTf++a++i+ l
     CTQ27182.1 41 TGSGKTFTIANVIADL 56
                   6***********9976 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0077
                    STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHC CS
  UvrD-helicase  43 iepdrilvvTFTnkAaeElkeRieealkkaeqes 76 
                      ++r+lv T T+++ae l e +ee+ +  ++ +
     CTQ27182.1 444 AINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477
                    45789****************9999655444433 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 4.2
                    HHHH....HHHHCCHHCTT-H......HHHHHHHHCT CS
  UvrD-helicase  64 Riee....alkkaeqessdde......rlrlalqnls 90 
                    +i+e    +++ a++            ++r++l++l+
     CTQ27182.1 635 KIHElegqMMQHAQN-----LefeeaaQIRDQLHQLR 666
                    333311111111111.....11222344555555544 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2      0.12   1.9e+02     171     213 ..     442     484 ..     399     495 .. 0.51
   2 ?    8.0   0.3   0.00099       1.6     129     168 ..     631     670 ..     626     673 .] 0.93

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.12
        CorA 171 revlkrlla.kaddkllddedkeylrdlldelerllemlealre 213
                 r+++++++  ++++k++ ++  eyl++  ++++ l+ +++++ e
  CTQ27182.1 442 RTAINERVLvTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV-E 484
                 333332222344445555555555555555555555444422.2 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00099
        CorA 129 kleeeldeledeledstkkeilrelaqlrrrlvklrrala 168
                 +l ++++ele ++++  ++ +++e aq+r +l +lr+ + 
  CTQ27182.1 631 ALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFI 670
                 6899********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       994  (0.0554409); expected 358.6 (0.02)
Passed bias filter:                      723  (0.0403257); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 4510.26
//
Query:       CTQ27183.1  [L=365]
Description: sensory histidine kinase in two-component regulatory system with BasR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-14   52.3   0.0    1.2e-13   51.5   0.0    1.4  1  HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like A
    1.9e-08   34.2   0.8    1.9e-08   34.2   0.8    2.7  3  HisKA      His Kinase A (phospho-acceptor) domain
    0.00091   19.6   2.9     0.0028   18.0   0.2    3.2  4  HAMP       HAMP domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0     2e-17   1.2e-13       1     109 [.     250     355 ..     250     358 .. 0.87

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 2e-17
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET. CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesep. 98 
                 gd + +r i++nlv+Na ++++++++i+v++ka     v+ veD G+Gi++++  +l ++f++    ++++gg GlGlsiv ++++l++ ++ +++++ 
  CTQ27183.1 250 GDATLIRVILRNLVENAHRYSPEGSTIRVSVKAGL-LPVMAVEDEGPGIDEAKSGELSKAFVR---MDSRYGGIGLGLSIVTRIAQLHDAQFFLHNRQp 344
                 67888999************99**********533.55779**********************...67889******************9999965554 PP

                 TTEEEEEEEEE CS
   HATPase_c  99 grGttftftlp 109
                 g G + ++ +p
  CTQ27183.1 345 GPGVRAWVLFP 355
                 77888888766 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.91   5.4e+03       8      15 ..      58      65 ..      13      72 .. 0.70
   2 !   34.2   0.8   3.2e-12   1.9e-08       3      65 ..     145     201 ..     143     203 .. 0.89
   3 ?   -1.6   0.1      0.49   2.9e+03      36      50 ..     234     254 ..     220     272 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.91
                HHHHHHHH CS
       HisKA  8 gvaHELrt 15
                +v HE r 
  CTQ27183.1 58 HVEHEVRE 65
                45555554 PP

  == domain 2  score: 34.2 bits;  conditional E-value: 3.2e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrie 65 
                 + f+a+vaHELrtPL+++++ +e+L +           ++ +++  ++++  +++lL+l+r +
  CTQ27183.1 145 RLFTADVAHELRTPLAGLRLHLELLAK------VHGMGVDPLIQRLDQMTTSISQLLQLARVG 201
                 579*********************966......667779999***************999976 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.49
                 SCHHHHHHHHHHHH......H CS
       HisKA  36 elkeyletiesear......r 50 
                 +++ +l +ie+ea        
  CTQ27183.1 234 QQRLLLTDIENEAVvsgdatL 254
                 455566666666655555552 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2   4.7e-07    0.0028       2      52 ..      88     138 ..      87     139 .. 0.95
   2 ?   -0.8   0.0      0.36   2.1e+03      39      52 ..     179     192 ..     177     193 .. 0.78
   3 ?   -2.2   0.0      0.93   5.5e+03      38      47 ..     303     312 ..     303     312 .. 0.93
   4 ?   -2.6   0.0       1.3   7.6e+03       4      16 ..     323     335 ..     321     335 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.7e-07
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                  +r i+rPL rL +  ++    +l++ +  ++  E+ ++  a+N+++ rL+
  CTQ27183.1  88 AVRKITRPLSRLQSELENRTPDNLTPIVLSESVPEVTAVTTALNQLVSRLN 138
                 689*****************99****9999******************996 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.36
                 HHHHHHHHHHHHHH CS
        HAMP  39 eLarafNaMldrLr 52 
                  L++ +++M +++ 
  CTQ27183.1 179 PLIQRLDQMTTSIS 192
                 58999999998876 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.93
                 HHHHHHHHHH CS
        HAMP  38 GeLarafNaM 47 
                 GeL +af +M
  CTQ27183.1 303 GELSKAFVRM 312
                 89*****999 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1.3
                 HTTHHHHHHHHHH CS
        HAMP   4 rrilrPLrrLara 16 
                  +i+ ++ +L++a
  CTQ27183.1 323 LSIVTRIAQLHDA 335
                 6899999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2633.19
//
Query:       CTQ27184.1  [L=223]
Description: DNA-binding response regulator in two-component regulatory system with BasS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-24   86.2   0.0    2.1e-24   85.8   0.0    1.2  1  Response_reg  Response regulator receiver domain
    1.2e-20   73.3   0.3    4.2e-20   71.6   0.0    2.0  2  Trans_reg_C   Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
      0.097   12.3   0.0        0.2   11.3   0.0    1.4  1  DUF1891       Domain of unknown function (DUF1891)


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.0   3.6e-28   2.1e-24       1     112 []       3     113 ..       3     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 3.6e-28
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l+++Dd l++++l  ++++egy +++ +++++ea   l ++++ li+lD+ +p+ dGl++l+++r+e+ + pv+ilta+++ ed++ +l+ gadd+
    CTQ27184.1   3 ILVIEDDALLLQGLILAMQSEGY-VCDGVSTAHEAALSLASNHYSLIVLDLGLPDEDGLHFLSRMRREKMTQPVLILTARDTLEDRISGLDTGADDY 98 
                   89*********************.************************************************************************* PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   l+Kpf+ eeL ++++
    CTQ27184.1  99 LVKPFALEELNARIR 113
                   **********99985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.47   2.8e+03      42      42 ..      96      96 ..      71     127 .. 0.57
   2 !   71.6   0.0     7e-24   4.2e-20       3      77 .]     147     216 ..     144     216 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.47
                 H CS
  Trans_reg_C 42 d 42
                 d
   CTQ27184.1 96 D 96
                 1 PP

  == domain 2  score: 71.6 bits;  conditional E-value: 7e-24
                  EEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   3 eveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                   ++ltpke++lL  L+ ++g +v re L++ ++  d++++++t++vhi++LR+k+++     ++I+tvrg GY+l
   CTQ27184.1 147 ALDLTPKEYALLSRLMMKAGSPVHREILYNDIYSWDNEPATNTLEVHIHNLREKIGK-----SRIRTVRGFGYML 216
                  589******************************************************.....69*********97 PP

>> DUF1891  Domain of unknown function (DUF1891)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.3e-05       0.2      16      39 ..      60      83 ..      59      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.3e-05
                XXXXXXXXXXSS.....SHTTTTT CS
     DUF1891 16 lyFLRkLkKanlpqrLLvlfyhet 39
                l+FL + ++ +++q++L+l  + t
  CTQ27184.1 60 LHFLSRMRREKMTQPVLILTARDT 83
                8****************9977766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1761.79
//
Query:       CTQ27185.1  [L=546]
Description: putative metal dependent hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-50  170.5   0.4    7.2e-50  170.1   0.4    1.1  1  Sulfatase  Sulfatase
    3.2e-39  134.2   9.4    3.2e-39  134.2   9.4    1.7  2  EptA_B_N   Phosphoethanolamine transferase EptA/EptB


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.1   0.4     8e-54   7.2e-50       3     309 .]     238     527 ..     236     527 .. 0.96

  Alignments for each domain:
  == domain 1  score: 170.1 bits;  conditional E-value: 8e-54
                 EEEEEESSE-TTGSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTTHHCTTTS-HHHHHHHHTT-EEEEEEE CS
   Sulfatase   3 vvliladdlgagdlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgggglpqteatLpellkeaGYntaaigk 101
                  +++l+++ +a++++l g+++ t+p +   ++  + f  + s++++++ s++++++ +++++++         ++l+++++ ++++l++aG +      
  CTQ27185.1 238 TIVVLGETSRADNFSLGGYSRDTNPLMR--QDGVIYFPHTTSCGTATAVSVPCMFSNMPRAHYD---------EELAHHQEGVLDILQRAGIRV----- 320
                 599************************8..89999999999***********************.........*********************..... PP

                 S-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHHHCCCTSSEEEEEEE-TTSSSTCTCGGHTCCGSTTT CS
   Sulfatase 102 whlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrvppeggysddrlldealefllarndkpfflylatlapHappeapdeyakkyatff 200
                     w+++++++k+      +++ + ++  + + +++ +        +g+++dd+l+ ++  + +++ +++  ++l+t+++H+ p++ ++y++++++f+
  CTQ27185.1 321 ---LWNDNDGGCKG-----ACDRVPHQNVTDLKLTGQCI--------DGECYDDVLFHNLDSY-IDNLQQDGIIVLHTIGSHG-PTYYNRYPAAFRKFT 401
                 ...*******9998.....99988888888887666655........599*************.6888**************6.8************** PP

                 TCCCCCCH......HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHC...... CS
   Sulfatase 201 ddgseaar......qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekap...... 287
                 +++++++       ql ++y+n++ yvD+++++ ++ L+ ++ +  t +v++SDhg+sl+e++++l+g +++ a++ + +vP+ +w +   ++      
  CTQ27185.1 402 PTCDTNEIqgctreQLTNTYDNTILYVDYVVDKAIKLLQSKQDKFTTSLVYLSDHGESLGEDGVYLHGLPYSIAPDTQKHVPMALWLSADYQQrygisa 500
                 ******88999999************************************************************************************* PP

                 .....EEECSEEEGGGHHHHHHHHTTE CS
   Sulfatase 288 .....rvseelvshiDlfptildlagi 309
                      r ++e +s+++lf t+l+l+g+
  CTQ27185.1 501 hclqqRAQKENYSQDNLFSTLLGLLGV 527
                 *************************96 PP

>> EptA_B_N  Phosphoethanolamine transferase EptA/EptB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.25   2.2e+03      93     123 ..       7      38 ..       4      57 .. 0.74
   2 !  134.2   9.4   3.6e-43   3.2e-39       3     150 ..      60     208 ..      58     210 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.25
                 HHHHHHHH.HHHHHHHHHHHHHHHTTHHHHHH CS
    EptA_B_N  93 lkellkrl.alllvallvivlvallfykdyas 123
                 ++ +++r+  l+l+a+ + +++ l+fy+++ +
  CTQ27185.1   7 RRPVVSRTtYLILFACYIGICLNLAFYRQVFP 38 
                 56677777677777777777777888887755 PP

  == domain 2  score: 134.2 bits;  conditional E-value: 3.6e-43
                 HHHHHHHHHH--TTTHHHHHHHHHHHHHHHHHHHHHS----SHHHHHHHHH--HHHHHTT--HHHHHHHHHHTHHHHHHHHH-EE.----HHHHHHHHH CS
    EptA_B_N   3 aalllllsllslryllkpllilllllsaaasYfmdtYgvvidkdMirNvleTdvaEasellslklllyllllgvlPallllrvki.krksllkellkrl 100
                 +++++l +l s+  l +++++l++llsa a+Yf+ ++gvvid++Mi N+l T++aE+ +lls ++++ l l gvl +++ ++vki k +++++  + rl
  CTQ27185.1  60 SVMNILTTLASFLKLDRLVISLFILLSASAQYFIWNFGVVIDRSMITNILDTTPAESFALLSGEMIAVLGLSGVLAVFVAWWVKIrKPATRWHGAAMRL 158
                 7899*********************************************************************************988899999***** PP

                 HHHHHHHHHHHHHHHTTHHHHHHHHHH-TTGGGGSTTHHHHHHHHHHHHH CS
    EptA_B_N 101 alllvallvivlvallfykdyaslfRnnkelrylinPtnyiyslvkylkk 150
                 + ++v++l+i+lva+lfykdyas+fRnnkel + + P+n i+++ +++ +
  CTQ27185.1 159 LNIAVSALLIILVAALFYKDYASVFRNNKELVKSLSPSNSIVAVNSWYAH 208
                 ********************************************988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4350.49
//
Query:       CTQ27186.1  [L=301]
Description: putative transferase with NAD(P)-binding Rossmann-fold domain; UPF0052 family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-76  257.4   0.0    1.8e-76  257.2   0.0    1.0  1  UPF0052   Uncharacterised protein family UPF0052
  ------ inclusion threshold ------
      0.077   12.7   0.1       0.22   11.3   0.1    1.8  1  Cecropin  Cecropin family


Domain annotation for each model (and alignments):
>> UPF0052  Uncharacterised protein family UPF0052
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.2   0.0     2e-80   1.8e-76       1     278 [.      12     286 ..      12     298 .. 0.92

  Alignments for each domain:
  == domain 1  score: 257.2 bits;  conditional E-value: 2e-80
                 EEEEE-CHHHHHHHHHHCCSSCEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH--S-CHHHHHCH-B-SSSSSSTT-BHHHHHHHHHHHHHS- CS
     UPF0052   1 vvvlgGGtGlskllrglkevtaeltavvtvaDdggssGelrrelgllaigDirnvlvalidderlleeLfqyRfkgdgdlaghslgnllLaalaeltgs 99 
                 vv+lgGG+Gl +++++l+++ ++lt +vt++D+ggs+G++rr+ g++a+gD+rn++ +li ++++ +++f+yRf g+g+l+gh+lgnl+L+al++l+ +
  CTQ27186.1  12 VVALGGGHGLGRVMSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCINQLIAEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVR 110
                 8***********************************************************************************************99* PP

                 HHHHHHHHHHHTT-SSEEEES-SS--EEEEEETTS-EEESTTTGGGG-S...-EEEEEEESTT----HHHHHHHHH-SEEEE-SS-IIIIIHHHHTSCC CS
     UPF0052 100 leeaiealskilkvrgrvlPatddpvelsaeledGeeitgeskisearklkapikrvflepegaeaapevleaikeAdlivlgpGslytSiiPiLlvpg 198
                   eai++++++lkv++ ++P++++pv+l+a  ++G+e+ ge +i   ++l++  ++++l+p  + a++e++eai+eAdli++gpGs+ytS++PiLl+++
  CTQ27186.1 111 PLEAINLIRNLLKVDAFLIPMSEQPVDLMALDHEGHEVYGEVNI---DQLDNVPQELMLTPPVP-ATREAVEAIAEADLILIGPGSFYTSLLPILLLDE 205
                 ********************************************...666668888******99.********************************** PP

                 HHHHHHH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-SS....S-SEEEE....E-S---HHHHHHHHT.TT--B-B--H CS
     UPF0052 199 iaealreskakkvlvsnimtqkGetdgfsvsdhvkaieravgkgvakayvdavlv....ntsevpeellekyaa.egkepvelDa 278
                 +a+alr++ a++v++ n+ ++++ + ++s+++ ++ +er+vgk+    +vdav++    + s ++++l+ +  + +++ p+++D+
  CTQ27186.1 206 MAQALRRTPAPMVFIDNLGKEHSPAARLSLAERIAIMERYVGKR----VVDAVIAgpkaDISGIDDRLVIQTPLeASDVPYRHDR 286
                 ******************************************99....9999996443344445555544443326677888886 PP

>> Cecropin  Cecropin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.4e-05      0.22       6      20 ..     242     257 ..     241     257 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.4e-05
    Cecropin   6 LEn.aGkrirdAaIkg 20 
                 +E+ +Gkr+ dA+I g
  CTQ27186.1 242 MERyVGKRVVDAVIAG 257
                 8*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2309.21
//
Query:       CTQ27187.1  [L=81]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 672.50
//
Query:       CTQ27188.1  [L=340]
Description: molybdopterin biosynthesis protein A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-38  132.2   0.0    1.7e-38  131.4   0.0    1.4  1  Mob_synth_C  Molybdenum Cofactor Synthesis C
    6.4e-28   98.2   0.0    9.2e-28   97.7   0.0    1.2  1  Radical_SAM  Radical SAM superfamily
    1.1e-06   29.0   0.0    2.1e-06   28.1   0.0    1.4  1  Fer4_12      4Fe-4S single cluster domain
    0.00047   20.3   0.0      0.001   19.2   0.0    1.6  1  Fer4_14      4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.045   13.9   2.3        6.8    6.9   0.1    2.4  2  DUF1272      Protein of unknown function (DUF1272)
      0.057   13.3   0.0         15    5.5   0.0    2.4  2  AhpC-TSA     AhpC/TSA family


Domain annotation for each model (and alignments):
>> Mob_synth_C  Molybdenum Cofactor Synthesis C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.0   5.7e-42   1.7e-38       1     127 [.     197     323 ..     197     324 .. 0.99

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 5.7e-42
                  -EEEEEE---B-TTSSB--SSB--HHHHHHHHHHHS-EEEE--SST-SSEEEEETTT--EEEEE-TTTS--GGG--EEEE-TTSEEESSSS-SS-EEH CS
  Mob_synth_C   1 ielrfIElmpvgegeewrekkvvsadeilerieerlalleakketkgpakrykikdgkgeiglIapvsepFCasCnRlRltadGklktCLfaeeeidl 98 
                  i+lrfIElm++geg++ ++++++s   +++++ +r ++++++++++gpa+++ ++d+ geiglI+p++++FCa+CnRlR+++ Gkl++CLf+e ++dl
   CTQ27188.1 197 IQLRFIELMETGEGSDLFRRHHLSGMVLRDELLRRGWIHQIRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSVGKLHLCLFGEGGVDL 294
                  69************************************************************************************************ PP

                  HHHHHTT--HHHHHHHHHHHHHT----HH CS
  Mob_synth_C  99 rdllregaseeeLkelikealarkkekhk 127
                  rdl+ e++++ +L+++i eal +kk++h 
   CTQ27188.1 295 RDLMAEDRQQAALEARIAEALTHKKQTHF 323
                  **************************996 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   3.1e-31   9.2e-28       2     167 .]      30     192 ..      29     192 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 3.1e-31
                  EEESEESS--TTTSCCTT.HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpet.vrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpdeeklerll 98 
                  ++t  Cn+rC++C  +    +      +lsv+e+ +  +++    g++ v l+ggep+l++df+e++++ +++  + + i+v+tng+++  + +er +
   CTQ27188.1  30 SITDVCNFRCTYCLPNGYkPGAVNNNGFLSVDEVRRVTRAF-SALGTEKVRLTGGEPSLRRDFTEIIAAVRENP-AIRQIAVTTNGYRL-ARDVERWR 124
                  68999********99887788889999**************.5999***************************7.**************.******** PP

                  HTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  99 elgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleellell 167
                  ++g++ ++++++++d ++++ ++ +++ f +v+++++++ +ag+++v++++v+++ +n+++l+ +l ++
   CTQ27188.1 125 DAGLTAINVSVDSLDARQFHAIT-GQDKFHQVMDGIDAAFAAGFDKVKVNTVLMRDVNHHQLDTFLAWI 192
                  ***********************.99************************************9999886 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0     7e-10   2.1e-06      14     116 ..      34     136 ..      23     143 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 7e-10
     Fer4_12  14 gCnlsCkgCfnketwsfksgkef..tkelleeiiedlkkesiegltllGGEPllpenaeallelvkevkeekp.ekdiwlytgytleelskkekeellk 109
                  Cn++C +C  +  +    +++   + +  +++ + ++    e++ l+GGEP+l   +++++e++  v+e+    +  + ++gy l    ++ ++  l 
  CTQ27188.1  34 VCNFRCTYCLPNGYKPGAVNNNGflSVDEVRRVTRAFSALGTEKVRLTGGEPSL---RRDFTEIIAAVRENPAiRQIAVTTNGYRLARDVERWRDAGLT 129
                 6*********99999655443322367778899999999999************...99***********98879999********9998887778888 PP

     Fer4_12 110 eidvlvd 116
                  i+v vd
  CTQ27188.1 130 AINVSVD 136
                 8888887 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.4e-07     0.001       6      96 ..      33     121 ..      25     138 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.4e-07
     Fer4_14   6 sgCnlsCkgCd.nketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletngt.leiele 96 
                   Cn+ C+ C+ n  +     ++ + + +++++++    s    +++ ltGGeP +    +++ +++  ++e+    +i + tng  l+ ++e
  CTQ27188.1  33 DVCNFRCTYCLpNGYKPGAVNNNGFLSVDEVRRVT-RAFSALGTEKVRLTGGEPSL---RRDFTEIIAAVRENPAIRQIAVTTNGYrLARDVE 121
                 46*********533333333334444444555553.4444555588********84...58*************9999999998641444444 PP

>> DUF1272  Protein of unknown function (DUF1272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.3    0.0033        10      23      33 ..      33      43 ..      29      46 .. 0.87
   2 ?    6.9   0.1    0.0023       6.8      23      39 ..     259     275 ..     248     280 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0033
     DUF1272 23 ricsyEctFCa 33
                 +c + ct+C 
  CTQ27188.1 33 DVCNFRCTYCL 43
                58********5 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0023
     DUF1272  23 ricsyEctFCaeCaeev 39 
                  i  yE  FCa+C   +
  CTQ27188.1 259 LIMPYEKDFCATCNRLR 275
                 6899*********8755 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0052        15      45      76 ..     113     144 ..     107     201 .. 0.67
   2 ?    5.3   0.0    0.0058        17      22      43 ..     252     273 ..     241     278 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0052
                 HHHHHHCHHHCCCTTEEEEEEESSSCHHHHHH CS
    AhpC-TSA  45 lpalaklyeefkergvevigvsvdspeshkkf 76 
                   +la+ +e+ +++g++ i vsvds+++ +  
  CTQ27188.1 113 GYRLARDVERWRDAGLTAINVSVDSLDARQFH 144
                 56789999******************943322 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0058
                 HHTTSEEEEEEESTST-CCHHH CS
    AhpC-TSA  22 dykgkpvvlffypkdwcpvCtt 43 
                 dy+g++ +++ y+kd+c  C++
  CTQ27188.1 252 DYAGEIGLIMPYEKDFCATCNR 273
                 9*******************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2735.66
//
Query:       CTQ27189.1  [L=170]
Description: molybdopterin biosynthesis protein B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-33  114.1   0.0    4.8e-33  113.9   0.0    1.0  1  MoCF_biosynth  Probable molybdopterin binding domain


Domain annotation for each model (and alignments):
>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   0.0   2.7e-37   4.8e-33       1     143 [.      14     156 ..      14     157 .. 0.92

  Alignments for each domain:
  == domain 1  score: 113.9 bits;  conditional E-value: 2.7e-37
                    EEEEE-HHHHTTSSGBHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHH..HHHHHTSSEEEEESS-SSSTT--HHHHHHHHHSEE-HHHHHHHH CS
  MoCF_biosynth   1 avitvGdellsgkieDtngpllaellkelgvevskytvvpDdeeeikeal..laaleeadviittGGtGptpdDvtpealaklfekelegfeeafr 94 
                    a++tv++++ ++  +Dt+g++l e+ +e+g++v + ++v+++  +i++++  + a ++++v+++tGGtG+t+ D  peal +lf++e+egf+e+fr
     CTQ27189.1  14 AILTVSSRRGEE--DDTSGHWLREAAQEAGHQVVEKAIVKENRYAIRAQVsaWIASDNVQVVLITGGTGFTDGDQAPEALLPLFDREVEGFGEVFR 107
                    689999998777..9***********************************654444555************************************* PP

                    HHHHHHCCTTSHGGGGGGE.EE....TTE.EEEE-SSHHHHHHHHHHHHHGGHH CS
  MoCF_biosynth  95 rvslkpgkpvgvapgailsrav....gkt.iigLPGspkavkealeeillpale 143
                    ++s ++     +++ +  srav    ++t i+++PGs ka+++a+++i+ p+l+
     CTQ27189.1 108 MLSFEE-----IGTSTLQSRAVagvaNRTlIFAMPGSTKACRTAWDNIIAPQLD 156
                    *****8.....77777899999***9888799*******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1404.16
//
Query:       CTQ27190.1  [L=162]
Description: molybdopterin biosynthesis, protein C [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-57  192.9   1.8    2.6e-57  192.7   1.8    1.0  1  MoaC      MoaC family


Domain annotation for each model (and alignments):
>> MoaC  MoaC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.7   1.8   1.4e-61   2.6e-57       1     136 []      15     150 ..      15     150 .. 1.00

  Alignments for each domain:
  == domain 1  score: 192.7 bits;  conditional E-value: 1.4e-61
                 E---TTS--EEEEEEEEEEEEE-HHHHHHHHTTSSTTB-HHHHHHHHHHHHHHHHHHHSTT-----EEEEEEEEEEETTTTEEEEEEEEEEEESS--HH CS
        MoaC   1 mvdvsekeetkrtAvAegrvklseetlelikekklkkGdvlavariagimaaKktseliplcHplpltkveveleleeeeesveieatvktegktGvem 99 
                 mvdvs k+et r+A+Ae+ v+++++tl++i +++++kGdv+a+ariagi+aaK+t+eliplcHpl+l+kvev+l+ + e+++v+ie+ ++ +gktGvem
  CTQ27190.1  15 MVDVSGKAETVREARAEAYVEMQATTLAMIIDGSHHKGDVFATARIAGIQAAKRTWELIPLCHPLMLSKVEVNLQAQPEHNRVRIESLCRLTGKTGVEM 113
                 9************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHTTTHTT-EEEEEEEEEEESS CS
        MoaC 100 EALtavsvaaltvyDmvKavdkemvieevrlveKsgG 136
                 EALta+svaalt+yDm+Kav+k+mvi  vrl++KsgG
  CTQ27190.1 114 EALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGG 150
                 ************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1320.17
//
Query:       CTQ27191.1  [L=82]
Description: molybdopterin synthase, small subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-20   73.4   0.1    1.9e-20   73.3   0.1    1.0  1  ThiS      ThiS family
  ------ inclusion threshold ------
          4    7.6   6.9        3.9    7.6   0.2    2.7  3  DUF1586   Protein of unknown function (DUF1586)


Domain annotation for each model (and alignments):
>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.1   2.1e-24   1.9e-20       1      77 []       4      82 .]       4      82 .] 0.98

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 2.1e-24
                EEETTCCHHHHT..CEEEEESSTSBHHHHHHHHHHHTCHHG...TTTTEEEEETTEEEGCCTTTSB--TTCEEEEEESTTC- CS
        ThiS  1 vllfaelrelag..eeelelaegstvaelleaLgerypela...lerrvavavNgeivprlwldtelkdgDevailppVaGG 77
                vl+fa++rel+g  + +l+ +e +tv++++++L++r++++a   +e ++ +avN+++ ++   ++++++gDeva++ppV+GG
  CTQ27191.1  4 VLFFAQVRELVGtdSLTLDASELATVEAVRQQLAARGDRWAlalEEGKLLAAVNQTLTSF---EHPVASGDEVAFFPPVTGG 82
                89***********99999999***********************99**************...******************9 PP

>> DUF1586  Protein of unknown function (DUF1586)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.89     8e+03       7      10 ..      31      34 ..      31      35 .. 0.85
   2 ?    3.4   0.4    0.0088        79       2       6 ..      42      46 ..      41      47 .. 0.95
   3 ?    7.6   0.2   0.00043       3.9       5      13 ..      53      61 ..      53      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.89
     DUF1586  7 AVsq 10
                AV+q
  CTQ27191.1 31 AVRQ 34
                8*99 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0088
     DUF1586  2 RTALA 6 
                R+ALA
  CTQ27191.1 42 RWALA 46
                9***9 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00043
     DUF1586  5 LAAVsqtPT 13
                LAAV+qt T
  CTQ27191.1 53 LAAVNQTLT 61
                9******66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 641.01
//
Query:       CTQ27192.1  [L=150]
Description: molybdopterin synthase, large subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-35  121.6   0.0    2.2e-35  121.4   0.0    1.1  1  MoaE          MoaE protein
  ------ inclusion threshold ------
       0.04   12.4   0.0      0.048   12.2   0.0    1.1  1  DAHP_synth_2  Class-II DAHP synthetase family


Domain annotation for each model (and alignments):
>> MoaE  MoaE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   0.0   2.4e-39   2.2e-35       4     113 .]      11     121 ..       8     121 .. 0.93

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 2.4e-39
                 S---HHH.HHHHH--TT--EEEEEEEE------TS-EEEEEECC-HHHHHHHHHHHHHHHHCCCTTSEEEEEEE-EEEETTSEEEEEEEEESSHHHHHH CS
        MoaE   4 epldvae.iealvaspkaGAvvlFvGtvRdsfdgkkvteLeyeayepmaektleeiaeearerwelervavvHrlGelevgeasvvvavssahRkeafe 101
                 + ++v+e +  l ++++ GAvv+F+G vR+++ g++v++L++e+y++m+ek+l+ei+e arerw+l rv+v+Hr+Ge+ +ge++v+v+v+sahR +af+
  CTQ27192.1  11 ARFSVSEeYPWLAERDEDGAVVTFTGKVRNHNLGDSVKALTLEHYPGMTEKSLAEIVELARERWPLGRVTVIHRIGEMWPGEEIVFVGVTSAHRGSAFA 109
                 56777774555666999************9999****************************************************************** PP

                 HHHHHHHHHHHH CS
        MoaE 102 aceylidelKkr 113
                 a e+++d+lK+r
  CTQ27192.1 110 AGEFIMDYLKTR 121
                 **********96 PP

>> DAHP_synth_2  Class-II DAHP synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.3e-06     0.048     244     320 ..       5      87 ..       1      93 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.3e-06
  DAHP_synth_2 244 rkdsetklydtsahflWiGdRTrqldgahveflrgieNpi........gvKvgpslkpeelvelldilnPekepGrltlitRlga 320
                   r   + + +++s  + W+ +R  + dga v f  +++N           +   p +++++l e+++    +   Gr+t+i+R+g+
    CTQ27192.1   5 RIVVSPARFSVSEEYPWLAER--DEDGAVVTFTGKVRNHNlgdsvkalTLEHYPGMTEKSLAEIVELARERWPLGRVTVIHRIGE 87 
                   555556689999999***997..78*************7556655555666789*************999999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1217.43
//
Query:       CTQ27193.1  [L=234]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-59  200.1  37.2    3.9e-59  200.0  37.2    1.0  1  Bax1-I           Inhibitor of apoptosis-promoting Bax1
  ------ inclusion threshold ------
      0.091   13.2  24.4        6.4    7.2  15.1    2.4  2  Caps_synth_CapC  Capsule biosynthesis CapC


Domain annotation for each model (and alignments):
>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.0  37.2   4.3e-63   3.9e-59       2     207 .]      19     230 ..      18     230 .. 0.94

  Alignments for each domain:
  == domain 1  score: 200.0 bits;  conditional E-value: 4.3e-63
      Bax1-I   2 aflrkvYgllalgllltalvaavvlsspa.qlflslhivlflvvilaplalvflslsaarlkkkssalalallllftlleGlslspillvytgaiilqa 99 
                 +++++vYg++++glllta++a++++ +pa  +f+  + ++f+++i+a+lalvf++++  + ++ s+ +a++l++l+++l+Gl+ls+i+ +yt ++i+++
  CTQ27193.1  19 TYMAQVYGWMTVGLLLTAFIAWFAANTPAvMMFVFSSKITFFGLIIAQLALVFVLSG--MVQRLSAGMATTLFMLYSALTGLTLSSIFIAYTYSSIAST 115
                 79**************************996666666789************96655..5777899999****************************** PP

      Bax1-I 100 flltaaifgglslyalttkrdlsglggflfagligliiaslvnlFlpssalelaisylgvllfsglilyDtqkiierageygee.......dailaals 191
                 f++t+++fg++sly++ttkrdlsg+g++lf+glig+++aslvnl+l+s+al +a++y+gv+lf+gl++yDtqk+++   + +          +il+al+
  CTQ27193.1 116 FVVTGGMFGAMSLYGYTTKRDLSGFGSMLFMGLIGIVLASLVNLWLKSEALMWAVTYIGVVLFVGLTAYDTQKLKNIGEQIDTRdsatlrkYSILGALT 214
                 **************************************************************************987666655589************* PP

      Bax1-I 192 LyldfinlFlslLril 207
                 LyldfinlFl+lLri+
  CTQ27193.1 215 LYLDFINLFLMLLRIM 230
                 ***************8 PP

>> Caps_synth_CapC  Capsule biosynthesis CapC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  15.1   0.00071       6.4       6      83 ..      18     100 ..      15     122 .. 0.64
   2 ?    5.5   9.6    0.0025        22      31     114 ..     107     190 ..      80     193 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00071
  Caps_synth_CapC   6 sllftettglslgGlvvpGylalvldqplsllvtllialltylivrl..lsrflilyGr.rrfvavlllgvlv..klllelll 83 
                      ++ +++++g+ + Gl+  +++a ++++  +++++++++ +t++ + +  l+ +++l G  +r+ a +++ +++  ++l+ l l
       CTQ27193.1  18 QTYMAQVYGWMTVGLLLTAFIAWFAANTPAVMMFVFSSKITFFGLIIaqLALVFVLSGMvQRLSAGMATTLFMlySALTGLTL 100
                      67899********************999999**********987766446666666663234444333333220022222333 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0025
  Caps_synth_CapC  31 dqplsllvtllialltylivrl..lsrfli..lyGrrrfvavlllgvlvklllelllllllpaelveeleviGliv.pgLiAndferqg 114
                      +   s++ t++++  ++  + l  + +     l G   ++++ l+g++++ l++l+l++    +   +++ iG+++ +gL+A+d ++ +
       CTQ27193.1 107 YTYSSIASTFVVTGGMFGAMSLygYTT--KrdLSGFGSMLFMGLIGIVLASLVNLWLKSEALMW---AVTYIGVVLfVGLTAYDTQKLK 190
                      222222333333333333333211222..122456667899999************99944333...78999998759******99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1077  (0.0600703); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 1929.32
//
Query:       CTQ27194.1  [L=321]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-17   64.1  36.8    2.3e-17   63.5  36.8    1.2  1  LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
      0.004   17.2   1.0      0.004   17.2   1.0    2.7  3  Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
  ------ inclusion threshold ------
        2.5    8.4   3.5        1.5    9.1   0.1    2.3  2  MLANA            Protein melan-A


Domain annotation for each model (and alignments):
>> LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5  36.8   3.8e-21   2.3e-17       5     300 ..      21     295 ..      13     296 .. 0.78

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 3.8e-21
  LPG_synthase_TM   5 lalsalllalllrgvdlaalaaalrsldpwwlllalllallsvllralrWrlllrsl.garislrrllrayliglfvnnvtPgalgGevvrayl 97 
                      +a+++ll+ +   +vd++++++++r  d   l  a++l+++s+l+  + + ll r+  g+++  r+++ +++i +++n ++   +gG  +r +l
       CTQ27194.1  21 IAVIVLLVIY-AQKVDWQDVWKVIRGYDRLALFSAIALVIVSYLI-YGCYDLLGRAYcGHKLAKRQVMLVSFICYAFNLTLSTWVGGIGMRYRL 112
                      2333444444.59***************99998899999999664.445567777767***************************9******** PP

  LPG_synthase_TM  98 lkrkegvslskalasvvverlldllalvllgllallllggllaegaa...vllllalallllavla.lllllllrrrlarlarvlkrlarllar 187
                       +r  g++ s+ + ++ +    + l+ +llg++ + + + +l +      + l + ++++l++ l+ l+++ + +rr+++++   +rl      
       CTQ27194.1 113 YSR-LGLNGSTITRIFSLSITTNWLGYILLGGVIFTADLVKLPPHWYisqTTLRIIGGVMLILTLCyLFGCAFAKRRHLTIK--GQRL------ 197
                      ***.888888877777776666666666666666666665555533334444444444444333331444444444444443..5555...... PP

  LPG_synthase_TM 188 farklasakrklvlasprrlllafllslliwllealtlylllralgvdvslallllillaltlvgalpplPgGlGvrEaalalllallGvsaae 281
                                  vl s+r  ll+ +ls++ w++ +++++ll   lg +++++l+l +ll+++++g++  +P+G+Gv Ea+++++l+  ++s+++
       CTQ27194.1 198 ------------VLPSWRFALLQMGLSAANWMAMGAIIWLL---LGSEINYFLVLGVLLVSSIAGVIIHIPAGIGVLEAVFIAMLSGEDISKGA 276
                      ............4459999*********************8...599*********************************************** PP

  LPG_synthase_TM 282 alaaallyrlitlylllll 300
                      ++aa l++r++ ++l+lll
       CTQ27194.1 277 IIAALLAWRALYYFLPLLL 295
                      ****************998 PP

>> Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.0   6.6e-07     0.004      44     113 ..       6      75 ..       1     102 [. 0.91
   2 ?   -2.0   2.4       0.5     3e+03     100     100 ..     213     213 ..     132     281 .. 0.59
   3 ?   -0.9   0.5      0.22   1.3e+03      51      60 ..     282     291 ..     235     318 .. 0.45

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.6e-07
  Abhydrolase_9_N  44 psrrvrrrlrlalavvalvvllvalvlaarwQrelralmgaeplgaaeyllvllvallvfalllllgrll 113
                      p+ r+ +r+ ++l+ +a++vllv++++ + wQ+  + + g ++l   +++++++v+ l+++   llgr+ 
       CTQ27194.1   6 PRWRMAKRVLTVLFFIAVIVLLVIYAQKVDWQDVWKVIRGYDRLALFSAIALVIVSYLIYGCYDLLGRAY 75 
                      566778899999999**********************************************999999975 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.5
  Abhydrolase_9_N 100 l 100
                      +
       CTQ27194.1 213 A 213
                      2 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.22
  Abhydrolase_9_N  51 rlrlalavva 60 
                       +++al+  +
       CTQ27194.1 282 LAWRALYYFL 291
                      2222222222 PP

>> MLANA  Protein melan-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.6      0.79   4.7e+03      31      45 ..      55      69 ..      50      92 .. 0.67
   2 ?    9.1   0.1   0.00025       1.5      19      50 ..     158     189 ..     147     202 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.79
       MLANA 31 lvvvLaillllgCwy 45
                +++v+   l+ gC+ 
  CTQ27194.1 55 IALVIVSYLIYGCYD 69
                456777788999974 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00025
       MLANA  19 yitaeeaaGigllvvvLaillllgCwyykrrs 50 
                 yi+      ig ++++L++  l+gC + krr+
  CTQ27194.1 158 YISQTTLRIIGGVMLILTLCYLFGCAFAKRRH 189
                 555555556888999***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1137  (0.0634168); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.36
# Mc/sec: 2636.28
//
Query:       CTQ27195.1  [L=414]
Description: cardiolipin synthase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-40  138.0   0.0    1.1e-24   86.8   0.0    2.1  2  PLDc_2          PLD-like domain
    4.8e-11   42.4   0.3      1e-06   28.7   0.1    2.5  2  PLDc            Phospholipase D Active site motif
    0.00016   20.9   0.0     0.0055   15.9   0.0    2.5  3  Regulator_TrmB  Archaeal transcriptional regulator TrmB
  ------ inclusion threshold ------
       0.14   12.2   2.8        2.8    7.9   0.0    3.0  2  Glyco_transf_4  Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   8.5e-17   3.8e-13       3     117 ..      26     152 ..      24     167 .. 0.78
   2 !   86.8   0.0   2.5e-28   1.1e-24       3     129 ..     215     337 ..     213     341 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 8.5e-17
      PLDc_2   3 qliksAkksidiatyyf...vsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfe.t.......ll..gslHaKlyl 88 
                 ++i +A++++ + +++    ++ r + + ll+aa+rg +v++lld      ++ ++ s     el ++agv  r ++ +       ++  +++H+K+++
  CTQ27195.1  26 AAIGRASRRVILESFIWfedEVGRRLHAVLLEAARRGIQVEVLLDG-----YGSPDLSDEFVGEL-TAAGVIFRYYDpRpklmgmrTNlfRRMHRKIVV 118
                 7899************9555555666777899*************9.....56666888999999.9********996245555442278********* PP

      PLDc_2  89 idgktvivGSsNltkrgl.....dlnlElnvvie 117
                 id++t++vG+ N++++ +     ++ ++ +v +e
  CTQ27195.1 119 IDDTTAFVGGINYSAEHMsdygpEAKQDYAVQVE 152
                 **************99886555555555555555 PP

  == domain 2  score: 86.8 bits;  conditional E-value: 2.5e-28
      PLDc_2   3 qliksAkksidiatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfetllgslHaKlylidgktvivGSsNl 101
                 +++ sA++++ ia+ yf +   +l a+++aa+rgv+v+++++  ++d ++v+   ++ l ++l ++gv+++++ +  + lH K++l d+++++vGSsNl
  CTQ27195.1 215 KMLTSARREVIIANAYFFPGYRLLHAMRNAARRGVRVKLIVQG-EPDIPIVK-FGAHLLYHYLVKGGVQIYEYRR--RPLHGKVALADDHWATVGSSNL 309
                 6899**************************************9.67788877.5566666666*********977..679******************* PP

      PLDc_2 102 tkrgldlnlElnvviedkelakeleeeF 129
                 ++ +l+lnlE+n++i+d+ +++ l+++ 
  CTQ27195.1 310 DPLSLSLNLEANLIIHDRVFNQTLRDNL 337
                 ******************9999998876 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   2.2e-10     1e-06       3      24 ..     110     131 ..     108     135 .. 0.90
   2 !   11.3   0.0   6.7e-05       0.3       5      25 ..     290     310 ..     290     311 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.2e-10
                 BEE---EEEETTTEEEEE---S CS
        PLDc   3 gthHqKivivDdrvafvGgaNL 24 
                  ++H+Kiv++Dd+ afvGg N+
  CTQ27195.1 110 RRMHRKIVVIDDTTAFVGGINY 131
                 689******************9 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 6.7e-05
                 E---EEEETTTEEEEE---SS CS
        PLDc   5 hHqKivivDdrvafvGgaNLc 25 
                 +H K    Dd++a vG++NL+
  CTQ27195.1 290 LHGKVALADDHWATVGSSNLD 310
                 69******************8 PP

>> Regulator_TrmB  Archaeal transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.023     1e+02      36      62 ..      49      77 ..      41     104 .. 0.75
   2 ?   -2.3   0.0      0.46   2.1e+03     189     217 ..     102     130 ..      83     134 .. 0.78
   3 !   15.9   0.0   1.2e-06    0.0055       8      65 ..     206     264 ..     201     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.023
                    HHHHHHHHHHHHTT-EEEEEESS..---- CS
  Regulator_TrmB 36 eelreeliaaaergvtVllliyp..dedl 62
                    ++l+  l +aa+rg++V++l+ +   +dl
      CTQ27195.1 49 RRLHAVLLEAARRGIQVEVLLDGygSPDL 77
                    67888999************998663332 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.46
                     EEEEEETTTTEEEEEEEETTEEEEEE-TT CS
  Regulator_TrmB 189 veatlnstpgvaslvvetedgevtVGGlg 217
                     +++++n ++  +  +v  +d +  VGG +
      CTQ27195.1 102 MGMRTNLFRRMHRKIVVIDDTTAFVGGIN 130
                     34558999999999999999999999975 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 1.2e-06
                     HHHHHHHHHHHHHH-SSEEEEEE-GGGHH..HHHHHHHHHHHTT-EEEEEESS----GGG CS
  Regulator_TrmB   8 retvierieelIesAenelivslpselLe..elreeliaaaergvtVllliypdedleel 65 
                     r+ + +   ++++sA+ e+i++  + +++  +l   +++aa+rgv+V l++ +++d ++ 
      CTQ27195.1 206 RDDIERHYLKMLTSARREVIIANAY-FFPgyRLLHAMRNAARRGVRVKLIVQGEPDIPIV 264
                     788899999************8666.55423789******************99987765 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00062       2.8       4      63 ..      47     112 ..      47     120 .. 0.64
   2 ?    2.4   0.1     0.031   1.4e+02       8      33 ..     237     262 ..     234     298 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00062
  Glyco_transf_4   4 verhvleLaraLarrGheVtvvtpgddgpleeev......elvvrvprvplpllkrllrslaflrr 63 
                     v+r ++ +  + arrG++V+v+ +g++ p    +        +v ++++ ++++    r+  f+r 
      CTQ27195.1  47 VGRRLHAVLLEAARRGIQVEVLLDGYGSPDLSDEfvgeltAAGVIFRYYDPRPKLMGMRTNLFRRM 112
                     578888888999**********88887777777666555555555555554444444444444443 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.031
  Glyco_transf_4   8 vleLaraLarrGheVtvvtpgddgpl 33 
                     +l+  r+ arrG++V ++++g ++ +
      CTQ27195.1 237 LLHAMRNAARRGVRVKLIVQGEPDIP 262
                     56778999**********98877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 3510.02
//
Query:       CTQ27196.1  [L=253]
Description: putative metal-dependent hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-15   56.4   0.2    3.9e-15   56.0   0.2    1.2  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.59   10.0   0.0    2.0  1  Exo_endo_phos_2  Endonuclease-reverse transcriptase


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.2   4.4e-19   3.9e-15      22     233 .]      33     244 ..      15     244 .. 0.74

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 4.4e-19
                    HHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH.................TTCEEEEECCH..ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  22 ladlltaydaDvlgLQEvdddelsriplllal.................ggflgasstsp..tgggggggnggavlsrfpltslfrrtfiefndlv 98 
                    l+d +++  aD+++LQEv + ++  +++  ++                           +     +  g++g avlsrfp+   + r         
     CTQ27196.1  33 LRDAVRSVSADIVCLQEVMGAHEVHPLHIENWpdtthyefladtmwsdyA---------YgrNAVYPEGHHGNAVLSRFPIEYYENR--------- 110
                    7788888899*******777776666555544777777666666554432.........0334567799************888222......... PP

                    GCEEEEEEEEEEEEEEE................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTHH. CS
                    xxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Exo_endo_phos  99 aalrreplaakleqlni................ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapapv. 177
                      +++  +++k                       +++    ++++q+++  l+ + ++++ g+pv+vaGDfN        ++              
     CTQ27196.1 111 --DISVGNGEKRG---LlycrivppqsgitihvICVHLGLRADQRQAQLTMLAEWVNTLPAGEPVVVAGDFNDWRQQANQPL------------Ka 189
                    ..22222222222...133466777789999******************************************444444444............04 PP

                    ......SSCESCETTTTTTTTTTTEB-BEEEEEEC.HHHCCEEEEEEECCHHEECTSSCSSSB CS
                    ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 178 ......glyllgggptptyvtraggsrlDrilasp.alalfrsgvlppplalvrrealtlSDH 233
                           ++  +g p+ t + +++  rlDri++++    +  ++ l             lSDH
     CTQ27196.1 190 qagleeIFTRARGRPARTFPVSFPLLRLDRIYVKNaHASRPKALALKQWRH--------LSDH 244
                    44555668**************************96666666666544443........3777 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   6.6e-05      0.59      13      48 ..     149     185 ..     134     248 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 6.6e-05
  Exo_endo_phos_2  13 elenlestlekllselksp.kiiilGDfNakhplWgs 48 
                      +++  ++ l + +++l++  +++++GDfN   ++ ++
       CTQ27196.1 149 QRQAQLTMLAEWVNTLPAGePVVVAGDFNDWRQQANQ 185
                      56777888999999999989*********87776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2124.66
//
Query:       CTQ27197.1  [L=145]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-71  238.6   9.3    1.7e-71  238.4   9.3    1.0  1  YbhQ        Putative inner membrane protein YbhQ
  ------ inclusion threshold ------
      0.025   13.3   1.3      0.031   13.0   1.3    1.1  1  Aa_trans    Transmembrane amino acid transporter protein
      0.036   14.0   5.7      0.036   14.0   5.7    2.2  2  PSII_Ycf12  Photosystem II complex subunit Ycf12


Domain annotation for each model (and alignments):
>> YbhQ  Putative inner membrane protein YbhQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.4   9.3   2.8e-75   1.7e-71       1     126 [.       1     126 [.       1     134 [. 0.97

  Alignments for each domain:
  == domain 1  score: 238.4 bits;  conditional E-value: 2.8e-75
        YbhQ   1 mkwqqrvrvvtGlscaqillhllvvallvlGwkskalvkvglglvvlyavvlvamlllqrhpearlrevgdfleeltttyyfGaalialyllsrvlhnn 99 
                 mkwqqrvrv+tGlsc+qi+lhllvva+lv+Gw+s+alv+vglgl+vly+v+l+aml+lqrh+ear+r+vgdfleelttt+yfGaa+ial+llsrvlhnn
  CTQ27197.1   1 MKWQQRVRVATGLSCWQIMLHLLVVAVLVMGWMSGALVRVGLGLCVLYSVTLLAMLFLQRHHEARWRDVGDFLEELTTTWYFGAAMIALWLLSRVLHNN 99 
                 9************************************************************************************************** PP

        YbhQ 100 lllalvGlvllaGpalvsllakekkrr 126
                 lllal+Glv+laGpa+vsllak+k+r+
  CTQ27197.1 100 LLLALAGLVILAGPAVVSLLAKDKSRY 126
                 *************************98 PP

>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.3   5.2e-06     0.031      26      86 ..      25      90 ..      22     124 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.2e-06
    Aa_trans 26 yAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlg........yrllGpkgklii 86
                +A+  +G++ G ++ +  +l+ ly+ +lL+ +       +  ++++d+g        + ++G  +  + 
  CTQ27197.1 25 VAVLVMGWMSGALVRVGLGLCVLYSVTLLAMLFLQ---RHHEARWRDVGdfleelttTWYFGAAMIALW 90
                68899************************998863...5778888888877777776666666664433 PP

>> PSII_Ycf12  Photosystem II complex subunit Ycf12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.1       1.1   6.6e+03       3      14 ..      16      27 ..      16      30 .. 0.58
   2 ?   14.0   5.7   6.1e-06     0.036       9      27 ..     102     120 ..     100     121 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.1
                XXHHHHHHHHHH CS
  PSII_Ycf12  3 fEviaQLtalal 14
                +++ + L  +a 
  CTQ27197.1 16 WQIMLHLLVVAV 27
                666666666664 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 6.1e-06
                 HHHHHHHHHHHHHHHHHHH CS
  PSII_Ycf12   9 LtalalIvlAGPaVIvlLa 27 
                 L++ +l++lAGPaV+ lLa
  CTQ27197.1 102 LALAGLVILAGPAVVSLLA 120
                 67789*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1134.31
//
Query:       CTQ27198.1  [L=368]
Description: putative transporter subunit: permease component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-46  158.6  13.5    2.6e-46  158.3  13.5    1.0  1  ABC2_membrane_3  ABC-2 family transporter protein
    8.1e-36  123.4  13.2    8.9e-35  120.0   9.8    2.2  2  ABC2_membrane    ABC-2 type transporter
    6.6e-27   94.5   8.6    7.9e-27   94.3   8.6    1.1  1  ABC2_membrane_2  ABC-2 family transporter protein
    3.7e-05   23.8  10.5    3.7e-05   23.8  10.5    2.2  2  ABC2_membrane_4  ABC-2 family transporter protein
  ------ inclusion threshold ------
        0.1   12.1   9.7       0.33   10.4   4.4    2.3  2  CcmB             CcmB protein
        3.4    7.8   5.9       0.89    9.7   0.4    2.5  3  Arv1             Arv1-like family
        7.5    5.9  12.1         11    5.3   0.1    2.1  2  DUF373           Domain of unknown function (DUF373)


Domain annotation for each model (and alignments):
>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.3  13.5     1e-49   2.6e-46       7     343 ..      25     359 ..      22     361 .. 0.91

  Alignments for each domain:
  == domain 1  score: 158.3 bits;  conditional E-value: 1e-49
  ABC2_membrane_3   7 tlllPiilvlllglifsnsveddentpiavvdednsslsqqlvealeaspsvelvyevdseeeakkalkngdidgilvipkgfskdllkgesat 100
                      +l++P+++ +l ++ f ++  +++n  ia+++ed    + +l++ ++  + ++ v  ++s + ++  ++++++  ++ +p++fs++l  +++a+
       CTQ27198.1  25 ILIMPVLIQVL-LFPFAATL-EVTNATIAIYNEDSGRHAVELTQRFARAKAFTHVLLLQSPQAIQPTIDEQKALLVVRFPADFSRNLDNYQTAP 116
                      58999999986.55556677.59************999999**********99899999999999***************************** PP

  ABC2_membrane_3 101 vtvlinssnlnsskailnalnsllqqlnasalvlqseatstsaninvestqleeelsnvasflvg.liliilifitasfiavsiveEkesrike 193
                      +++l+++ n+ns+++++n+l+++ +++ ++      e +  + n ++  ++ ++++ +++ f+v+ li++i  + ++++++ s+++E+e++++ 
       CTQ27198.1 117 LQLLLDGRNSNSAQIAANYLQQIVKNYQQEL----LEGKAKPNNSELVVRNWYNPNLDYKWFVVPsLIAMITTIGVMIVTSLSVAREREQGTLD 206
                      **********************887777655....57889999999999999*************89999999999999999************ PP

  ABC2_membrane_3 194 lqlvsgvsplqywlskilgdflvyllqlllilll...afglgipfgnlglll.llfllfglayialgyllsslfknsetaqilifivilllsgf 283
                      ++lvs++ ++q++++k +  ++v+ lq+ ++l++   a++  ipf +++ll+ + ++++gl+++ +g+l+ssl+ ++  a+i +f+++++++++
       CTQ27198.1 207 QLLVSPLATWQIFVGKAVPALIVATLQATIVLAIgiwAYQ--IPFAGSLLLFyFTMVIYGLSLVGFGLLISSLCATQQQAFIGVFVFMMPAILL 298
                      *****************************99997667888..****9988888***************************************** PP

  ABC2_membrane_3 284 fgglfpledlpsalkwifsiiPffapglgllrlitgd.plweillsliilalfavvyllla 343
                      +g++ p+e++p +l+ +++i+P+ ++++  ++++  d +l  ++ sl+ l+++a+ ++ +a
       CTQ27198.1 299 SGYVSPVENMPQWLQDLTWINPIRHFTDITKQIYLKDaSLEIVWGSLWPLLVIAATTGSAA 359
                      **********************************999455446788888888888777665 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.1    0.0055        14       3      38 ..       5      39 ..       3     107 .. 0.78
   2 !  120.0   9.8   3.5e-38   8.9e-35      52     208 ..     163     331 ..     123     333 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0055
  ABC2_membrane  3 ikallkreflqrwrdpslgllwrliqplllalvfgt 38
                   +++l+++e+++ +r p++  +  ++  l++ l+f +
     CTQ27198.1  5 LWTLIRKELQSLLREPQTR-AILIMPVLIQVLLFPF 39
                   79**************666.5555555666666554 PP

  == domain 2  score: 120.0 bits;  conditional E-value: 3.5e-38
  ABC2_membrane  52 r.............pgllffsvlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelpvsllqalifllivyflvgldls.rfflf 133
                    +             p l++++++  + +++ts+++ +ere+g+l+++lvspl  ++ ++++k++  l+v++lqa+i+l+i ++   ++   + +lf
     CTQ27198.1 163 NwynpnldykwfvvPSLIAMITTIGV-MIVTSLSVAREREQGTLDQLLVSPL-ATWQIFVGKAVPALIVATLQATIVLAIGIWAYQIPFAgSLLLF 256
                    24556666666675677776666666.*************************.******************************9888776666*** PP

  ABC2_membrane 134 lllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlqwiaylnPltyavealrsn 208
                    ++++++++l ++++gllis+l+ ++++a + ++++++p +llsG++ p+++mp+wlq + ++nP+++++++  ++
     CTQ27198.1 257 YFTMVIYGLSLVGFGLLISSLCATQQQAFIGVFVFMMPAILLSGYVSPVENMPQWLQDLTWINPIRHFTDITKQI 331
                    ****************************************************99**************9986665 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   8.6   3.1e-30   7.9e-27       1     285 [.       6     365 ..       6     367 .. 0.85

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 3.1e-30
  ABC2_membrane_2   1 laiakkEfrdlvrsrrfllltvllpli..............dvalaylkdlgsslqseakaikeatlaleyveaasasdeaedtdqdlkv.... 76 
                      +++++kE++ l+r + + ++ +  +li               + +a+++++++++  e  + ++ + a+  v     +++++ t  + k+    
       CTQ27198.1   6 WTLIRKELQSLLREPQTRAILIMPVLIqvllfpfaatlevtNATIAIYNEDSGRHAVELTQRFARAKAFTHVLLLQSPQAIQPTIDEQKAllvv 99 
                      89***************999988888899******************************9999999999887765555555555555555799* PP

  ABC2_membrane_2  77 ............................................................................vstimavlipviaalfga 94 
                                                                                                  v+ ++a++ ++  ++ ++
       CTQ27198.1 100 rfpadfsrnldnyqtaplqllldgrnsnsaqiaanylqqivknyqqellegkakpnnselvvrnwynpnldykwfvVPSLIAMITTIGVMIVTS 193
                      ********************************************************************************************** PP

  ABC2_membrane_2  95 daiagEkergTlkllLskPvsRdeillgKfigglaiglaiavallatvllalaiilalgivlale.dllllvvasvlllllvvflalglllSsv 187
                       ++a+E+e+gTl +lL +P   ++i +gK++  l++      +l at    ++ i ++ ++++++ +lll+ +  v+++l   ++++gll+Ss+
       CTQ27198.1 194 LSVAREREQGTLDQLLVSPLATWQIFVGKAVPALIV-----ATLQAT---IVLAIGIWAYQIPFAgSLLLFYFTMVIYGL--SLVGFGLLISSL 277
                      ********************************9999.....444444...334568899998876156666666677777..67********** PP

  ABC2_membrane_2 188 arssreaaalalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdlnalgstatnllilllllavllvlgy. 280
                         ++++a + +++f++ ail ++ +++v ++++       + ++l++++p+++++ ++++i+  ++          ++   l+++ +++ ++ 
       CTQ27198.1 278 CA-TQQQAFIGVFVFMMPAILLSGYVSPVENMPQ-------WLQDLTWINPIRHFTDITKQIYLKDA-------SLEIVWGSLWPLLVIAATTg 356
                      **.899999*****************99888888.......8999******************9994.......23333333333333333333 PP

  ABC2_membrane_2 281 ....vlFkr 285
                           +F+r
       CTQ27198.1 357 saayAMFRR 365
                      333255555 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.88   2.3e+03      58      67 ..      26      35 ..       8      57 .. 0.50
   2 !   23.8  10.5   1.4e-08   3.7e-05      39     170 ..     163     289 ..     156     304 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.88
  ABC2_membrane_4 58 lllplilgii 67
                     l++p+++ ++
       CTQ27198.1 26 LIMPVLIQVL 35
                     2222222221 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.4e-08
  ABC2_membrane_4  39 tgldpaefyslsvfgftlllllplilgiiasylifrEeqndtlknLltiPvsrtklllaKlivllllsvllmlvtflitvlfallsgfvgfsvk 132
                       + +p+  y++ v++  + ++ ++ + i++s ++ rE++++tl +Ll+ P    +++++K +  l+++ l     ++i++++++ +  ++f ++
       CTQ27198.1 163 NWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLATWQIFVGKAVPALIVATLQ----ATIVLAIGIWAYQIPFAGS 252
                      56678888999999999989999999999********************************9988864443....4456677788888999999 PP

  ABC2_membrane_4 133 lvlellkkclelgllvffavlpiialvllkksyvlpli 170
                      l+l+ + +++    lv f +l i  l++ +++ ++++ 
       CTQ27198.1 253 LLLFYFTMVIYGLSLVGFGLL-ISSLCATQQQAFIGVF 289
                      999888888877777777666.5555555555555554 PP

>> CcmB  CcmB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2    0.0092        24       2      37 ..       6      41 ..       5      51 .. 0.80
   2 ?   10.4   4.4   0.00013      0.33      68     140 ..     196     269 ..     174     307 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0092
        CcmB  2 lalllrdlrlalRakgelllgllFfllvvtllplav 37
                ++l++++l+  lR+ +  ++ ++ +l+ v+l+p+a 
  CTQ27198.1  6 WTLIRKELQSLLREPQTRAILIMPVLIQVLLFPFAA 41
                678888888888888888888888888888888875 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00013
        CcmB  68 faadfedGsLellllapvplellvlaKalAhwlltglplvllapllalllnleaaalgll.altLllGtpalsl 140
                  a ++e+G+L++ll++p++   + ++Ka+   +++ l  +++ ++     ++++a+  ll   t+++  ++l  
  CTQ27198.1 196 VAREREQGTLDQLLVSPLATWQIFVGKAVPALIVATLQATIVLAIGIWAYQIPFAGSLLLfYFTMVIYGLSLVG 269
                 46799********************************9999988887788888876554414555554444443 PP

>> Arv1  Arv1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.34   8.7e+02      94     142 ..       7      53 ..       3     102 .. 0.67
   2 ?    9.7   0.4   0.00035      0.89     118     205 ..     166     260 ..     104     267 .. 0.66
   3 ?   -1.1   0.1      0.71   1.8e+03     128     159 ..     282     325 ..     270     354 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.34
        Arv1  94 ariekksesessslsaqaivlesakelkqylfflvlalletlvfhlsil 142
                 + i k+ +s  ++ +++ai++  + +l q+l+f + a+le++  ++ i+
  CTQ27198.1   7 TLIRKELQSLLREPQTRAILI--MPVLIQVLLFPFAATLEVTNATIAIY 53 
                 555554344444444444444..78888999998888888877776665 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00035
        Arv1 118 kelkqylfflvlalletlvfh.lsillllslesslsa.........lllkykkarlnalltalllssyaklfpilmlIWeydltalalslikllvlls 205
                 ++   y  f+v +l+ +++   ++i++ ls+ ++  +          l++++   +   + al+++++   +++++ IW+y+++++ +  + l+++++
  CTQ27198.1 166 NPNLDYKWFVVPSLIAMITTIgVMIVTSLSVAREREQgtldqllvsPLATWQ-IFVGKAVPALIVATLQATIVLAIGIWAYQIPFAGS--LLLFYFTM 260
                 3444566665555555443330333333333333333767777665444555.77888899**********************99985..44444444 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.71
        Arv1 128 vlalletlvfhlsillllslesslsalllky.............k 159
                  +a++ ++vf++   ll+ + s++ + ++++             +
  CTQ27198.1 282 QQAFIGVFVFMMPAILLSGYVSPVEN-MPQWlqdltwinpirhfT 325
                 45667778888888888888666666.688866666565444441 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0044        11     142     183 ..       7      52 ..       3      54 .. 0.85
   2 ?    2.6   7.9      0.03        77     221     325 ..     179     286 ..     160     299 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0044
      DUF373 142 yll....kkalkdpelrktiLvplGlllliyalllllglpelalai 183
                 +l+    + +l++p++r ++++p+ + +l+++++++l++++ ++ai
  CTQ27198.1   7 TLIrkelQSLLREPQTRAILIMPVLIQVLLFPFAATLEVTNATIAI 52 
                 5566555889**************************9999877765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.03
      DUF373 221 fvtyvvallllligiisgyislesvssasvssglltlilafiygavewlalailtaslgkiideylkreekdiarllllpflvlaiglvlygasaylls 319
                 ++++++++ ++++  +s   + e+ + ++   + l    +f+ +av+ l++a l a ++ +i  +   +  +  +lll +f++++ gl l+g+   + s
  CTQ27198.1 179 LIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLATWQIFVGKAVPALIVATLQATIVLAIGIWA-YQIPFAGSLLLFYFTMVIYGLSLVGFGLLISS 276
                 3445555555555555554443333335666666677777***********************999.77899999************999999999955 PP

      DUF373 320 ......lsilal 325
                       +    +
  CTQ27198.1 277 lcatqqQ--AFI 286
                 7776432..222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2807.88
//
Query:       CTQ27199.1  [L=377]
Description: putative transporter subunit: permease component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-38  130.6  15.6      8e-38  130.4  15.6    1.0  1  ABC2_membrane_3  ABC-2 family transporter protein
    1.6e-37  129.4  11.7    1.9e-37  129.1  11.7    1.1  1  ABC2_membrane_2  ABC-2 family transporter protein
    5.5e-23   81.5  34.9    7.4e-22   77.8  21.9    3.0  3  ABC2_membrane    ABC-2 type transporter
     0.0061   16.5  16.8     0.0061   16.5  16.8    2.6  3  ABC2_membrane_4  ABC-2 family transporter protein
  ------ inclusion threshold ------
       0.85    9.8   0.0       0.85    9.8   0.0    4.0  5  DUF5326          Family of unknown function (DUF5326)


Domain annotation for each model (and alignments):
>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4  15.6   2.2e-41     8e-38       8     345 .]      29     370 ..      26     370 .. 0.85

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 2.2e-41
  ABC2_membrane_3   8 lllPiilvlllglifsnsve.ddentpiavvdednsslsqqlvealeaspsvelvyevdseeeakkalkngdidgilvipkgfskdll.kgesa 99 
                      +l+ +++ lll++if+++ + d + ++++v+ e++s+ +  +v  +  sp+++     ds  ++ + ++ g i +++vip +f+++   +g++a
       CTQ27199.1  29 WLIAVVIPLLLLFIFGYGINlDSSRLRVGVLLEQQSEEALDFVHTMTGSPYTD-ATVSDSRRQLIEMMQAGRIRAMVVIPVDFDRQMArPGADA 121
                      57888888888888888888889*****************************9.99*****************************988****** PP

  ABC2_membrane_3 100 tvtvlinssnlnsskailnalnsl...lqqlnasalvlqseatstsaninvestqleeelsnvasflvgliliilifitasfi.avsiveEkes 189
                      ++++++++s +n+++ ++ +++++    qq+ a++       +  +  i+v+ +  ++++  +++f+++ ++ i+++++++++ +  +++E e+
       CTQ27199.1 122 PLQLITDGSEPNTANFAQGYVEGIwqiWQQQRAEDR-----GETFEPLIDVQMRYWFNPAAISQHFIIPGAITIIMTVVGAILtSLVVAREWER 210
                      **********************85233333333332.....233445566777778*************77777777776655055669***** PP

  ABC2_membrane_3 190 rikelqlvsgvsplqywlskilgdflvyllqlllill...lafglgipfg.nlglllllfllfglayialgyllsslfknset.aqilifivil 278
                      +++e +l++ +++++++l k++ ++++++l +ll++l   +++g  +p+  +l +l++   lf+l+++ +g+l+s++++n+ + aq+++ + +l
       CTQ27199.1 211 GTMEALLSTEITRAELLLCKLIPYYFLGMLAMLLCMLvsvFILG--VPYRgSLPILFVITSLFLLSTLGMGLLISTITRNQFNaAQVALNAAFL 302
                      ************************************95544899..****5555666************************8836777888888 PP

  ABC2_membrane_3 279 llsgffgglfpledlpsalkwifsiiPffapglgllrli.tgdplweillsliilalfavvylllall 345
                      + ++++g++f ++++p  ++ ++++iP  ++   l +l   g+ ++ +l ++++l+++av ++ l++l
       CTQ27199.1 303 PSIMLSGFIFQIDSMPAVIRAVTYVIPARYFVSTLQSLFlAGNIPVVLLVNVLFLIASAVMFIGLTWL 370
                      77888888888***************************64777333466**************99985 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1  11.7   5.4e-41   1.9e-37       2     281 ..      13     370 ..      12     376 .. 0.90

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 5.4e-41
  ABC2_membrane_2   2 aiakkEfrdlvrsrrfllltvllpli..........................dvalaylkdlgsslqsea...kaikeatlaleyveaasasde 66 
                      a+  kE r++vr+++ +l++v++pl+                           +al ++  + +s  ++a    + +++ ++++++++ ++  +
       CTQ27199.1  13 ALCVKETRQIVRDPSSWLIAVVIPLLllfifgyginldssrlrvgvlleqqsEEALDFVHTMTGSPYTDAtvsDSRRQLIEMMQAGRIRAMVVI 106
                      5677**********************99999999999999999999999999555555555555444444000455666666666666677777 PP

  ABC2_membrane_2  67 aedtdqdlkv...................................................................vstimavlipviaalfg 93 
                      + d+d+++++                                                                   ++++++++++v++a+++
       CTQ27199.1 107 PVDFDRQMARpgadaplqlitdgsepntanfaqgyvegiwqiwqqqraedrgetfeplidvqmrywfnpaaisqhfiIPGAITIIMTVVGAILT 200
                      8889999888************************************************************************************ PP

  ABC2_membrane_2  94 adaiagEkergTlkllLskPvsRdeillgKfigglaigla.iavallatvllalaiilalgivlaledllllvvasvlllllvvflalglllSs 186
                      + ++a+E+ergT+++lLs+ ++R+e+ll K+i +  +g++ +++++l++v +       lg++ +++  +l+v+ s++ll   + l++gll+S+
       CTQ27199.1 201 SLVVAREWERGTMEALLSTEITRAELLLCKLIPYYFLGMLaMLLCMLVSVFI-------LGVPYRGSLPILFVITSLFLLS--T-LGMGLLIST 284
                      *************************************************666.......8999999999999999998888..5.8******** PP

  ABC2_membrane_2 187 varssreaaalalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdlnalgstatnllilllllavllvlgy 280
                      ++r++ +aa++al   ++ +i+ +++ +++ +++a+  +       ++++ p++++   l++++  +++    +   n+l+l++ ++ +++l++
       CTQ27199.1 285 ITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRA-------VTYVIPARYFVSTLQSLFLAGNIP--VVLLVNVLFLIASAVMFIGLTW 369
                      **********************************98777.......*********************877..9*******************98 PP

  ABC2_membrane_2 281 v 281
                       
       CTQ27199.1 370 L 370
                      4 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   3.4e-05      0.12       3      40 ..      11      47 ..       9      61 .. 0.88
   2 !   77.8  21.9   2.1e-25   7.4e-22      47     209 ..     179     341 ..     149     342 .. 0.92
   3 ?   -1.2   2.8      0.32   1.2e+03     103     127 ..     344     369 ..     339     373 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.4e-05
  ABC2_membrane  3 ikallkreflqrwrdpslgllwrliqplllalvfgtvf 40
                   ++al  +e +q++rdps+  l  ++ plll+++fg+ +
     CTQ27199.1 11 VRALCVKETRQIVRDPSSW-LIAVVIPLLLLFIFGYGI 47
                   68999**************.99*************976 PP

  == domain 2  score: 77.8 bits;  conditional E-value: 2.1e-25
  ABC2_membrane  47 edglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelpvsllqalifllivyflvgldls.rfflfllllllta 141
                    ++ + +pg++ ++++ ++ ++lts+++ +e erg++e +l++ + ++++ +l k++ +  +++l+ l+ +l+++f++g+++  +  ++++++ l++
     CTQ27199.1 179 SQHFIIPGAITIIMTVVG-AILTSLVVAREWERGTMEALLSTEI-TRAELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRgSLPILFVITSLFL 272
                    344456************.*************************.************************************8655888999***** PP

  ABC2_membrane 142 laasslgllisalapsfedasqla.slvllpllllsGffipidsmpkwlqwiaylnPltyavealrsnl 209
                    l ++++gllis++++++ +a+q+a ++ +lp ++lsGf++ idsmp +++++ y+ P +y+v+ l+s +
     CTQ27199.1 273 LSTLGMGLLISTITRNQFNAAQVAlNAAFLPSIMLSGFIFQIDSMPAVIRAVTYVIPARYFVSTLQSLF 341
                    ***********************99*********************9*****************99986 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.32
  ABC2_membrane 103 velpvsllqalifll.ivyflvgldl 127
                    +++pv ll+ ++fl+  ++ ++gl++
     CTQ27199.1 344 GNIPVVLLVNVLFLIaSAVMFIGLTW 369
                    56899999999999944444468887 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.7   6.1e+03      21      34 ..      31      44 ..      27      52 .. 0.56
   2 !   16.5  16.8   1.7e-06    0.0061      52     174 ..     184     310 ..     164     343 .. 0.73
   3 ?   -1.2   1.0      0.47   1.7e+03     102     127 ..     349     365 ..     327     375 .. 0.48

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.7
  ABC2_membrane_4 21 aallvpllallyfn 34
                     +a+++pll+l++f 
       CTQ27199.1 31 IAVVIPLLLLFIFG 44
                     34444444444443 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.7e-06
  ABC2_membrane_4  52 fgftlllllplilgiiasylifrEeqndtlknLltiPvsrtklllaKlivllllsvllmlvtflitvlfallsgfvgfsvkl....vlellk.. 139
                      ++  ++++++++ +i++s ++ rE + +t+  Ll   ++r++lll Kli   +l +l ml+ +    l+++++ +v++ ++l    v+ +l+  
       CTQ27199.1 184 IPGAITIIMTVVGAILTSLVVAREWERGTMEALLSTEITRAELLLCKLIPYYFLGMLAMLLCM----LVSVFILGVPYRGSLpilfVITSLFll 273
                      556788999999999************************************999999998744....455544555544443222233322211 PP

  ABC2_membrane_4 140 kclelgllvffavlpii.al.vllkksyvlpliltlv 174
                       +l +gll+  ++   + a  v+l+  ++++++l+ +
       CTQ27199.1 274 STLGMGLLISTITRNQFnAAqVALNAAFLPSIMLSGF 310
                      4555555555555555433336788888888888633 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.47
  ABC2_membrane_4 102 llllsvllmlvtflitvlfallsgfv 127
                      +ll+ vl++++           ++f+
       CTQ27199.1 349 VLLVNVLFLIA---------SAVMFI 365
                      22222222222.........222222 PP

>> DUF5326  Family of unknown function (DUF5326)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00024      0.85       2      27 ..      20      45 ..      19      54 .. 0.88
   2 ?   -1.4   0.9      0.73   2.6e+03      20      32 ..     190     202 ..     181     205 .. 0.56
   3 ?   -3.6   0.6       3.6   1.3e+04      29      38 ..     240     249 ..     232     255 .. 0.47
   4 ?    0.0   0.1      0.27   9.6e+02      36      57 ..     307     328 ..     300     339 .. 0.83
   5 ?   -0.6   1.2      0.42   1.5e+03      17      36 ..     346     365 ..     343     371 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00024
     DUF5326  2 reifaglPWWvkWvavPvivLvvfGg 27
                r+i+++   W   v++P+++L++fG 
  CTQ27199.1 20 RQIVRDPSSWLIAVVIPLLLLFIFGY 45
                788888889***************95 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.73
     DUF5326  20 ivLvvfGgliasv 32 
                 i++ v G++++s+
  CTQ27199.1 190 IIMTVVGAILTSL 202
                 3444445555554 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.6
     DUF5326  29 iasvvgvlig 38 
                 +a ++ +l++
  CTQ27199.1 240 LAMLLCMLVS 249
                 3333333332 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.27
     DUF5326  36 ligllfkvLvlvalvggliyvv 57 
                 l g++f++  + a++ ++ yv+
  CTQ27199.1 307 LSGFIFQIDSMPAVIRAVTYVI 328
                 668999999999*****99997 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 0.42
     DUF5326  17 vPvivLvvfGgliasvvgvl 36 
                 +Pv++Lv    lias v ++
  CTQ27199.1 346 IPVVLLVNVLFLIASAVMFI 365
                 78888887777888887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2708.48
//
Query:       CTQ27200.1  [L=579]
Description: putative transporter fused subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-56  189.2   0.0    8.6e-28   97.6   0.0    2.5  2  ABC_tran         ABC transporter
    1.6e-18   67.6   1.0    4.2e-05   23.5   0.0    4.2  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    1.7e-07   32.0   0.5     0.0026   18.3   0.1    2.3  2  AAA_23           AAA domain
    2.1e-07   30.5   0.7     0.0052   16.5   0.1    2.4  2  AAA_29           P-loop containing region of AAA domain
    1.2e-05   25.6   0.0     0.0066   16.7   0.0    3.1  3  AAA_22           AAA domain
    0.00028   20.6   0.2       0.01   15.5   0.0    2.3  2  AAA_27           AAA domain
    0.00029   20.6   0.2      0.049   13.3   0.0    2.6  2  AAA_30           AAA domain
    0.00037   20.4   0.3       0.68    9.7   0.0    2.3  2  MukB             MukB N-terminal
    0.00059   20.3   0.2       0.11   12.8   0.0    3.0  3  AAA_16           AAA ATPase domain
    0.00085   19.0   0.6       0.39   10.3   0.0    2.3  2  SRP54            SRP54-type protein, GTPase domain
    0.00094   19.6   0.9       0.47   10.9   0.1    3.4  3  AAA              ATPase family associated with various cellul
     0.0015   18.3   0.6       0.63    9.7   0.0    2.3  2  AAA_24           AAA domain
     0.0022   17.9   0.1        1.3    8.9   0.0    2.4  2  RsgA_GTPase      RsgA GTPase
     0.0023   17.9   0.0       0.23   11.3   0.0    2.2  2  Rad17            Rad17 P-loop domain
     0.0036   17.1   0.0        1.4    8.7   0.0    2.3  2  CLP1_P           mRNA cleavage and polyadenylation factor CLP
     0.0043   17.0   0.0        1.9    8.5   0.0    2.5  2  Cdc6_C           CDC6, C terminal winged helix domain
     0.0054   16.8   0.6        5.4    7.1   0.0    3.2  3  MMR_HSR1         50S ribosome-binding GTPase
     0.0059   15.6   1.0       0.76    8.7   0.1    2.3  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0063   15.9   2.3        1.8    7.9   0.1    2.9  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0098   16.1   0.6       0.74   10.0   0.0    2.5  2  AAA_33           AAA domain
  ------ inclusion threshold ------
      0.012   15.9   0.1        5.1    7.5   0.0    2.7  2  RNA_helicase     RNA helicase
      0.013   15.1   0.8      0.096   12.3   0.0    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.014   15.4   0.0       0.31   11.1   0.0    2.4  2  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
      0.019   14.7   0.0        3.1    7.4   0.0    2.9  3  AAA_15           AAA ATPase domain
       0.02   14.9   0.4        1.6    8.8   0.0    2.3  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.026   14.5   2.2        1.9    8.5   0.1    3.2  2  AAA_5            AAA domain (dynein-related subfamily)
      0.028   13.9   0.0        2.2    7.8   0.0    2.3  2  AAA_7            P-loop containing dynein motor region
      0.044   13.2   0.0        5.4    6.4   0.0    2.8  3  SMC_N            RecF/RecN/SMC N terminal domain
      0.046   13.7   0.0        9.5    6.3   0.0    3.4  3  AAA_14           AAA domain
      0.048   13.3   0.2       0.73    9.5   0.0    2.5  2  Thymidylate_kin  Thymidylate kinase
      0.057   13.2   0.3        1.2    8.8   0.0    2.3  2  ATP_bind_1       Conserved hypothetical ATP binding protein
       0.08   13.2   0.0         36    4.7   0.0    3.4  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
       0.12   12.5   0.4        6.1    6.9   0.1    2.3  2  DUF87            Helicase HerA, central domain
       0.13   12.5   0.7        2.6    8.2   0.0    2.7  2  AAA_28           AAA domain
       0.13   12.8   1.0          3    8.4   0.0    2.6  2  AAA_18           AAA domain
       0.13   12.1   0.5        6.1    6.7   0.0    2.7  3  NTPase_1         NTPase
       0.24   11.3   1.2        1.1    9.1   0.1    2.4  2  NACHT            NACHT domain
        1.6    8.3   4.3          2    7.9   0.2    2.6  2  AAA_25           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   6.9e-28   3.2e-25       4     135 ..      26     165 ..      23     167 .. 0.93
   2 !   97.6   0.0   1.8e-30   8.6e-28       2     137 .]     346     489 ..     345     489 .. 0.97

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 6.9e-28
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiekal 89 
                 ++ ++++g ++++vG+ GaGK+tL+++lagllkp+eG+  + g d  + + + l++ +g++pq+  l ++ltv en             ++++ ++++l
  CTQ27200.1  26 LTCTIRAGYVTGLVGPDGAGKTTLMRMLAGLLKPDEGRASVIGFDPLK-DDSALHAVLGYMPQKFGLYEDLTVMENltlyadlrsvtgeARKKIFDRLL 123
                 7889***********************************999777776.6999***************************9999998855555599999 PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135
                 +  +l  ++++ +     +LSgG+kq++ la++l+ +pk+lllDEp
  CTQ27200.1 124 EFTSLGPFTERLA----GKLSGGMKQKLGLACTLVGDPKVLLLDEP 165
                 9999999999999....****************************9 PP

  == domain 2  score: 97.6 bits;  conditional E-value: 1.8e-30
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 ++v++++k+ge+ +++G+nGaGKSt +k+++gll pt+G+ l+ g dlk  +  ++r+++g++ q+ +l  +l+v++n             +++e+i++
  CTQ27200.1 346 DHVDFQVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGKALVLGMDLKV-SSGKARQHLGYMAQKFSLYGNLSVEQNlrffsgvyglrgrAQNEKIAR 443
                 689***********************************************.9999***********************************999999*** PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + + +gl+ ++ + +     +L  G kqr+ala++l+ +p++l+lDEpt+
  CTQ27200.1 444 MSDAFGLESIARHAA----DELPLGYKQRLALACSLMHEPDILFLDEPTS 489
                 *********998888....*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00016     0.073       1      24 [.      35      58 ..      35     100 .. 0.75
   2 !   16.9   0.0   9.3e-06    0.0044     231     286 ..     133     185 ..     111     195 .. 0.85
   3 !    9.4   0.2    0.0018      0.83       2      17 ..     358     373 ..     357     386 .. 0.88
   4 !   23.5   0.0   8.9e-08   4.2e-05     239     297 ..     463     518 ..     454     518 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00016
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                +++l+Gp g+GK++L++ l +l  
  CTQ27200.1 35 VTGLVGPDGAGKTTLMRMLAGLLK 58
                699****************99963 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 9.3e-06
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkels 286
                 e+ a +lS G+k+ l+l+  l  ++   ++ll+DEp  g +P   r+l++++ el+
  CTQ27200.1 133 ERLAGKLSGGMKQKLGLACTLVGDP---KVLLLDEPGVGVDPISRRELWQMVHELA 185
                 4456678***************999...9*************999****9995554 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0018
      AAA_21   2 nvliGpNgsGKSnLLd 17 
                  +l GpNg+GKS+ ++
  CTQ27200.1 358 FGLLGPNGAGKSTTFK 373
                 689**********887 PP

  == domain 4  score: 23.5 bits;  conditional E-value: 8.9e-08
      AAA_21 239 dGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  G k+ lal+ +l   +   ++l++DEp +g +P   r+++  +++  ++g+ v++tTH
  CTQ27200.1 463 LGYKQRLALACSLMHEP---DILFLDEPTSGVDPLTRREFWLHINSMVDKGVTVMVTTH 518
                 55555556666666655...*********************99999999********** PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0    0.0006      0.28      21      41 ..      35      55 ..      27      78 .. 0.87
   2 !   18.3   0.1   5.4e-06    0.0026       7      43 ..     339     379 ..     336     387 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0006
      AAA_23 21 ltlItGpNGaGKTTildAikl 41
                +t ++Gp GaGKTT+++ +  
  CTQ27200.1 35 VTGLVGPDGAGKTTLMRMLAG 55
                7899************98865 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 5.4e-06
      AAA_23   7 frsfrdqe.idF...skgltlItGpNGaGKTTildAiklaL 43 
                 f+ f  ++ +dF      ++ + GpNGaGK+T +  ++  L
  CTQ27200.1 339 FGDFAATDhVDFqvkRGEIFGLLGPNGAGKSTTFKMMCGLL 379
                 677744433889886668****************9998766 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   0.00028      0.13      22      50 ..      32      61 ..      25      65 .. 0.82
   2 !   16.5   0.1   1.1e-05    0.0052      14      50 ..     347     383 ..     340     387 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00028
      AAA_29 22 kg.atlltGpsGsGKSTllDAiqalLvpak 50
                +g +t l+Gp G+GK+Tl+  ++ lL p++
  CTQ27200.1 32 AGyVTGLVGPDGAGKTTLMRMLAGLLKPDE 61
                566899*************88888888876 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.1e-05
      AAA_29  14 ghtieidlkgatlltGpsGsGKSTllDAiqalLvpak 50 
                 + ++++++ +++ l Gp+G+GKST +  +  lLvp++
  CTQ27200.1 347 HVDFQVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTS 383
                 4567777666999*************99999999986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.4e-05    0.0066       7      99 ..      35     164 ..      30     211 .. 0.79
   2 ?    5.1   0.1     0.055        26      10      25 ..     360     375 ..     352     416 .. 0.81
   3 ?   -1.5   0.0         6   2.9e+03      33      65 ..     465     508 ..     451     532 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.4e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee................................erpevvfvtlpsst..sskdllrellralglelkae 71 
                 ++ ++G+ G+GKTtl+r+l+  l+ ++  +                                 ++  +++ +l s t   +k+++ +ll+++ l+  +e
  CTQ27200.1  35 VTGLVGPDGAGKTTLMRMLAGLLKPDEGRASvigfdplkddsalhavlgympqkfglyedltvMENLTLYADLRSVTgeARKKIFDRLLEFTSLGPFTE 133
                 56689*****************98777766688899998888888888888888888877777777777888888888778888888888888887773 PP

      AAA_22  72 rlsseellealeqalrarav...ielliiDE 99 
                 rl  +    + ++   a+     +++l++DE
  CTQ27200.1 134 RLAGKLSGGMKQKLGLACTLvgdPKVLLLDE 164
                 3333333366666666666666777777776 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.055
      AAA_22  10 vtGesGtGKTtllrrl 25 
                 + G+ G+GK+t+ +++
  CTQ27200.1 360 LLGPNGAGKSTTFKMM 375
                 78**********9987 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 6
      AAA_22  33 akaee.......erpevvfvtlpsst....sskdllrellralg 65 
                 +k++        ++p+++f + p s+    ++++++ ++ + ++
  CTQ27200.1 465 YKQRLalacslmHEPDILFLDEPTSGvdplTRREFWLHINSMVD 508
                 44444556667778888888888888888888888888877766 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.19        90      31      50 ..      38      57 ..      33      58 .. 0.88
   2 !   15.5   0.0   2.1e-05      0.01       9      50 ..     337     379 ..     331     383 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.19
      AAA_27 31 iyGpNEAGKstalrAisdll 50
                ++Gp  AGK+t++r +  ll
  CTQ27200.1 38 LVGPDGAGKTTLMRMLAGLL 57
                58***********9988776 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2.1e-05
      AAA_27   9 eryGkftdr.sldfsaeeadlhliyGpNEAGKstalrAisdll 50 
                 +++G f+ + ++df+ ++ ++  ++GpN AGKst+++ +  ll
  CTQ27200.1 337 KKFGDFAATdHVDFQVKRGEIFGLLGPNGAGKSTTFKMMCGLL 379
                 68****87658************************99887766 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0    0.0001     0.049      19      51 ..      34      68 ..      25      78 .. 0.80
   2 ?    4.5   0.1     0.052        25      20      38 ..     357     375 ..     347     410 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.0001
      AAA_30 19 rvavltGpAGtGKttalkalreaweaa.g.grvig 51
                 v+ l+Gp G+GKtt+++ l+ +++ + g  +vig
  CTQ27200.1 34 YVTGLVGPDGAGKTTLMRMLAGLLKPDeGrASVIG 68
                48899***************999987744445555 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.052
      AAA_30  20 vavltGpAGtGKttalkal 38 
                 +  l Gp G+GK+t+ k +
  CTQ27200.1 357 IFGLLGPNGAGKSTTFKMM 375
                 66789**********9876 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0014      0.68      27      55 ..      34      62 ..      30      71 .. 0.90
   2 !    8.4   0.0    0.0035       1.6      29      53 ..     358     382 ..     330     402 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0014
                HHHHHHS--SHHHHHHHHHHHHHHS--TT CS
        MukB 27 lvttlsGgnGaGksttmaafvtaliPdls 55
                +vt l G +GaGk+t m  +   l Pd  
  CTQ27200.1 34 YVTGLVGPDGAGKTTLMRMLAGLLKPDEG 62
                69*****************9999999975 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0035
                 HHHHS--SHHHHHHHHHHHHHHS-- CS
        MukB  29 ttlsGgnGaGksttmaafvtaliPd 53 
                   l G nGaGkstt   +   l+P 
  CTQ27200.1 358 FGLLGPNGAGKSTTFKMMCGLLVPT 382
                 4689***********9999999996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00024      0.11      29      69 ..      38      78 ..      22     183 .. 0.75
   2 ?   -0.9   0.0       3.9   1.9e+03     106     145 ..     272     322 ..     201     336 .. 0.62
   3 ?    4.0   0.0      0.13        60      24      45 ..     355     376 ..     345     485 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00024
      AAA_16 29 lsGesGvGKsslvrellralekdggiflrgkcdqlesaipy 69
                l+G+ G GK++l+r+l+  l+ d+g +    +d l+ + ++
  CTQ27200.1 38 LVGPDGAGKTTLMRMLAGLLKPDEGRASVIGFDPLKDDSAL 78
                89***************999999888877777777555444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 3.9
      AAA_16 106 a..........avpelagaea.srllellkrllallsrderplvlvlDdlq 145
                            + p+l  a+   r+ +++ +ll  + + e+pl  ++  ++
  CTQ27200.1 272 DarieevqqhgDMPPLQVADTaPRFEDAFIDLLGGAGTAESPLGAIIHRVD 322
                 032322222333333333333578888888888888888888776665555 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.13
      AAA_16  24 pelvllsGesGvGKsslvrell 45 
                 +e+  l G+ G GKs+  ++  
  CTQ27200.1 355 GEIFGLLGPNGAGKSTTFKMMC 376
                 3778899********9877665 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00082      0.39       5      37 ..      37      69 ..      34      73 .. 0.82
   2 ?    6.6   0.1     0.011       5.3       6      39 ..     360     393 ..     356     413 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00082
                EEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEE CS
       SRP54  5 llvGlqGaGKTttlaKLaallkkegkkvllvaa 37
                 lvG+ GaGKTt +  La llk ++ ++ ++  
  CTQ27200.1 37 GLVGPDGAGKTTLMRMLAGLLKPDEGRASVIGF 69
                59*****************99988766666655 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.011
                 EEESTTSSHHHHHHHHHHHHHHTTS-EEEEEEST CS
       SRP54   6 lvGlqGaGKTttlaKLaallkkegkkvllvaaDt 39 
                 l+G++GaGK tt   +  ll     k+l+  +D 
  CTQ27200.1 360 LLGPNGAGKSTTFKMMCGLLVPTSGKALVLGMDL 393
                 89***********999999999988888888885 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1     0.001      0.47       3      23 ..      38      58 ..      36     165 .. 0.90
   2 ?    5.3   0.1     0.052        24       3      22 ..     360     379 ..     358     420 .. 0.79
   3 ?   -0.6   0.0       3.6   1.7e+03      57      66 ..     476     486 ..     451     524 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.001
                EESSTTSSHHHHHHHHHHHHT CS
         AAA  3 lyGppGtGKTllakavakelg 23
                l+Gp G GKT+l++ +a  l+
  CTQ27200.1 38 LVGPDGAGKTTLMRMLAGLLK 58
                89**************98775 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.052
                 EESSTTSSHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel 22 
                 l Gp G GK+++ k ++  l
  CTQ27200.1 360 LLGPNGAGKSTTFKMMCGLL 379
                 78************999864 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 3.6
                 S.TSEEEEEET CS
         AAA  57 a.kpsilfiDE 66 
                   +p ilf+DE
  CTQ27200.1 476 MhEPDILFLDE 486
                 35689999999 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0013      0.63       3      26 ..      34      64 ..      32      77 .. 0.75
   2 ?    6.6   0.1     0.012       5.7       6      31 ..     359     391 ..     355     401 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0013
      AAA_24  3 lkiliyGpsgiGKTtlakel.......gpkp 26
                +   ++Gp g+GKTtl+++l       + ++
  CTQ27200.1 34 YVTGLVGPDGAGKTTLMRMLagllkpdEGRA 64
                67789*************9966665554555 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.012
      AAA_24   6 liyGpsgiGKTtlakel.......gpkplfidt 31 
                  + Gp+g+GK+t+ k++         k+l++ +
  CTQ27200.1 359 GLLGPNGAGKSTTFKMMcgllvptSGKALVLGM 391
                 589************998777777677777665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0029       1.3     100     121 ..      34      55 ..      19      66 .. 0.82
   2 ?    6.6   0.1     0.014       6.7      87     120 ..     342     376 ..     322     400 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0029
                  SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallp 121
                   ++ lvG+ G+GK+tL+ +l++
   CTQ27200.1  34 YVTGLVGPDGAGKTTLMRMLAG 55 
                  6888**************9987 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.014
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinall 120
                   ++++++  ++k  ++  l+G+ G+GKSt  +++ 
   CTQ27200.1 342 FAATDHVDFQVKRgEIFGLLGPNGAGKSTTFKMMC 376
                  566778888887779999***********877665 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.077        37      50      69 ..      38      57 ..      31      63 .. 0.87
   2 !   11.3   0.0   0.00049      0.23      41      98 ..     349     409 ..     330     443 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.077
       Rad17 50 isGPsGCgkstvvkvLskel 69
                + GP G gk+t +++L+  l
  CTQ27200.1 38 LVGPDGAGKTTLMRMLAGLL 57
                68*************99665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00049
       Rad17  41 esrkkr..iLLisGPsGCgkstvvkvLskelgikl.rewlnpvslkepdnqksdfkgltek 98 
                 + + kr  i  + GP G gkst+ k++   l++   +  + ++ lk ++ +  + +g + +
  CTQ27200.1 349 DFQVKRgeIFGLLGPNGAGKSTTFKMMCGLLVPTSgKALVLGMDLKVSSGKARQHLGYMAQ 409
                 4455555699999****************99987615566799999988888877775544 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0029       1.4       1      44 [.      40      83 ..      40     113 .. 0.86
   2 ?    6.3   0.0     0.016       7.6       1      34 [.     362     395 ..     362     426 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0029
      CLP1_P  1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvGqseispPgtis 44
                Gp  +GK+Tl+r+L+  +   + +  ++  D+ + + ++ ++++
  CTQ27200.1 40 GPDGAGKTTLMRMLAGLLKPDEGRASVIGFDPLKDDSALHAVLG 83
                8999*************999999999999999877777666665 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.016
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvGq 34 
                 Gp+ +GKST  ++++  ++  + k +++ +D+  
  CTQ27200.1 362 GPNGAGKSTTFKMMCGLLVPTSGKALVLGMDLKV 395
                 899****************999999999999765 PP

>> Cdc6_C  CDC6, C terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.031        14      33      55 ..     168     190 ..     166     196 .. 0.87
   2 !    8.5   0.0     0.004       1.9      32      54 ..     489     511 ..     487     517 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.031
                 T-----HHHHHHHHHHHHHTTSE CS
      Cdc6_C  33 gvdpltqrevsdllseLemlgil 55 
                 gvdp+++re ++++ eL+  g l
  CTQ27200.1 168 GVDPISRRELWQMVHELAGDGML 190
                 89***************976665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.004
                 TT-----HHHHHHHHHHHHHTTS CS
      Cdc6_C  32 egvdpltqrevsdllseLemlgi 54 
                  gvdplt+re++ +++ + ++g+
  CTQ27200.1 489 SGVDPLTRREFWLHINSMVDKGV 511
                 59****************99998 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.011       5.4       3      21 ..      37      55 ..      35      69 .. 0.83
   2 ?   -1.3   0.0       4.6   2.2e+03      45      82 ..     156     192 ..     133     217 .. 0.61
   3 ?    6.0   0.2     0.026        12       3      24 ..     359     380 ..     357     399 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.011
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                ++vG   +GK+tL++ l g
  CTQ27200.1 37 GLVGPDGAGKTTLMRMLAG 55
                79*************9987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 4.6
                 TEEEEEEECGGCSS....HHHHHHHHHHHHHHHHCTSEEEEE CS
    MMR_HSR1  45 gkeielvDtpGlie....gaseekglgkaflaleeadlillv 82 
                 ++++ l+D pG +     + +e +++ ++++     d +l++
  CTQ27200.1 156 DPKVLLLDEPG-VGvdpiSRRELWQMVHELAG----DGMLIL 192
                 57889999999.53112222333333333222....444444 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.026
                 EEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgeka 24 
                 +++G   +GKSt ++ ++g  +
  CTQ27200.1 359 GLLGPNGAGKSTTFKMMCGLLV 380
                 799**************98544 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1    0.0016      0.76      30      68 ..      34      72 ..      24      84 .. 0.88
   2 ?    5.2   0.1     0.018       8.7      28      66 ..     354     392 ..     345     400 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0016
                EEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE--- CS
        MeaB 30 qvvGltGvPGaGkstlvealglelrrrGkrvavlavDPs 68
                 v Gl G  GaGk tl+  l+  l+    r +v+  DP 
  CTQ27200.1 34 YVTGLVGPDGAGKTTLMRMLAGLLKPDEGRASVIGFDPL 72
                4779*********************9999********95 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.018
                 -SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE- CS
        MeaB  28 raqvvGltGvPGaGkstlvealglelrrrGkrvavlavD 66 
                 r +  Gl G  GaGkst+ + +   l+    +  vl +D
  CTQ27200.1 354 RGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGKALVLGMD 392
                 67889**************99999888887777777776 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0038       1.8      27      49 ..      38      60 ..      24      67 .. 0.87
   2 ?   -1.3   0.0       2.5   1.2e+03       6      40 ..     140     174 ..     137     190 .. 0.81
   3 ?    6.3   0.0     0.012       5.6      27      54 ..     360     387 ..     346     411 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0038
  Mg_chelatase 27 lvGppGsGKtmlakrlpsllppl 49
                  lvGp G+GKt l + l++ll p 
    CTQ27200.1 38 LVGPDGAGKTTLMRMLAGLLKPD 60
                  89*****************9775 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.5
  Mg_chelatase   6 kGqeeakraleiaaaGgHnlllvGppGsGKtmlak 40 
                    G  ++k  l  +  G  ++ll+  pG G   + +
    CTQ27200.1 140 SGGMKQKLGLACTLVGDPKVLLLDEPGVGVDPISR 174
                   577788889999999************99766655 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.012
  Mg_chelatase  27 lvGppGsGKtmlakrlpsllpplseeea 54 
                   l+Gp G+GK+   k + +ll p s +  
    CTQ27200.1 360 LLGPNGAGKSTTFKMMCGLLVPTSGKAL 387
                   79******************99887655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0016      0.74       4      21 ..      38      55 ..      35     116 .. 0.85
   2 ?    3.9   0.2      0.12        57       5      19 ..     361     375 ..     358     410 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0016
      AAA_33  4 lvGlpGsGKstlaerllk 21
                lvG+ G+GK+tl + l+ 
  CTQ27200.1 38 LVGPDGAGKTTLMRMLAG 55
                89***********99875 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.12
      AAA_33   5 vGlpGsGKstlaerl 19 
                  G++G+GKst  + +
  CTQ27200.1 361 LGPNGAGKSTTFKMM 375
                 6*********88766 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.011       5.1       3      23 ..      38      58 ..      37     110 .. 0.75
   2 ?    5.5   0.1     0.047        22       3      23 ..     360     380 ..     358     415 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.011
  RNA_helicase  3 lyGpsgeGKStlakeLakall 23
                  l+Gp g GK+tl++ La  l 
    CTQ27200.1 38 LVGPDGAGKTTLMRMLAGLLK 58
                  68************9876555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.047
  RNA_helicase   3 lyGpsgeGKStlakeLakall 23 
                   l Gp+g GKSt+ k ++  l 
    CTQ27200.1 360 LLGPNGAGKSTTFKMMCGLLV 380
                   67***********99886555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0002     0.096       2      32 ..      35      67 ..      34      74 .. 0.82
   2 ?    0.4   0.3      0.91   4.3e+02       3      21 ..     358     376 ..     356     389 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0002
                EEEEEESTTCCHHHHHHHHH..CT--SS-EEEE CS
        cobW  2 vtvltGflGsGKTtLlnhll..enraglklavi 32
                vt+l+G+ G+GKTtL++ l    + ++ +  vi
  CTQ27200.1 35 VTGLVGPDGAGKTTLMRMLAglLKPDEGRASVI 67
                799**************9987666666666665 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.91
                 EEEEESTTCCHHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhll 21 
                 ++l G+ G+GK+t  + ++
  CTQ27200.1 358 FGLLGPNGAGKSTTFKMMC 376
                 57889*******9877665 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00065      0.31       9      94 ..      43     331 ..      40     345 .. 0.88
   2 ?    1.8   0.0      0.48   2.3e+02       9      37 ..     365     393 ..     362     577 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00065
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep..................................................... 54 
                 G+GKTtl   La +l+ ++ r  ++ +Dp    +a l+ + ++  +                                                     
  CTQ27200.1  43 GAGKTTLMRMLAGLLKPDEGRASVIGFDPLKDDSA-LHAVLGYMPQkfglyedltvmenltlyadlrsvtgearkkifdrlleftslgpfterlagkls 140
                 99**************9888888888888777777.555555555567777777779999*************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        CbiA  55 ................................................................................................... 54 
                                                                                                                    
  CTQ27200.1 141 ggmkqklglactlvgdpkvllldepgvgvdpisrrelwqmvhelagdgmlilwstsyldeaeqcrdvllmnegkllyqgeptaltqtmagrsflvsspq 239
                 *99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                 ....................................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCH CS
                 ....................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ....................................................dlkrllellealgkkkalllkiagvvlnrvdgeneetllk 94 
                                                                     ++ r++  + +l ++   +  ++g ++ rvdg++eet ++
  CTQ27200.1 240 ennrrllqralklpqvsdgviqgksvrlilkkdarieevqqhgdmpplqvadTAPRFEDAFIDLLGGAGTAESPLGAIIHRVDGSKEETVIE 331
                 99999999999999999999999999999999999999999999999999999999999999999997777999999999999997666544 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.48
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDp 37 
                 G+GK+t+   ++ +l     + l++ +D 
  CTQ27200.1 365 GAGKSTTFKMMCGLLVPTSGKALVLGMDL 393
                 89*****9999999987554444444444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0066       3.1      25      50 ..      35      60 ..      27      99 .. 0.85
   2 ?    2.3   0.0      0.23   1.1e+02      26      43 ..     358     375 ..     345     386 .. 0.81
   3 ?    0.6   0.0      0.77   3.6e+02     323     364 ..     478     518 ..     463     518 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0066
      AAA_15 25 ltvliGkNnsGKSsilealdlFlnnk 50
                +t l+G+ ++GK++++++l  +l+ +
  CTQ27200.1 35 VTGLVGPDGAGKTTLMRMLAGLLKPD 60
                789****************9988866 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.23
      AAA_15  26 tvliGkNnsGKSsileal 43 
                   l G+N++GKS+  +++
  CTQ27200.1 358 FGLLGPNGAGKSTTFKMM 375
                 5588*********98876 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.77
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 +++il+++EP     p   ++++  + ++++++   v++tTH
  CTQ27200.1 478 EPDILFLDEPTSGVDPLTRREFWLHINSMVDKGV-TVMVTTH 518
                 5799*****************************7.9****** PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0034       1.6      20      43 ..      34      57 ..      21      65 .. 0.81
   2 ?    3.8   0.1      0.11        53      18      40 ..     347     376 ..     326     384 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0034
                EEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE 20 dvilLeGdLGaGKTtlvrglakal 43
                 v  L G+ GaGKTtl+r la  l
  CTQ27200.1 34 YVTGLVGPDGAGKTTLMRMLAGLL 57
                566799999*********998655 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.11
                 H.......TEEEEEEESTTSSHHHHHHHHH CS
        TsaE  18 l.......gdvilLeGdLGaGKTtlvrgla 40 
                         g+++ L G+ GaGK+t  + ++
  CTQ27200.1 347 HvdfqvkrGEIFGLLGPNGAGKSTTFKMMC 376
                 2343334466799**********9999876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1     0.004       1.9       4      23 ..      38      57 ..      37      67 .. 0.86
   2 ?    3.9   0.2      0.11        50       4      24 ..     360     381 ..     358     396 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.004
                EE--SSSSHHHHHHHGGGGB CS
       AAA_5  4 LvGppGtgKselaerlaaal 23
                LvGp G gK++l++ la +l
  CTQ27200.1 38 LVGPDGAGKTTLMRMLAGLL 57
                8****************998 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.11
                 EE--SSSSHHHHHHHGGGGB.S CS
       AAA_5   4 LvGppGtgKselaerlaaal.n 24 
                 L+Gp G gKs+  + ++ +l  
  CTQ27200.1 360 LLGPNGAGKSTTFKMMCGLLvP 381
                 89**********9999988863 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0047       2.2      31      70 ..      31      70 ..      25      83 .. 0.80
   2 ?    3.6   0.1     0.086        40      30      68 ..     352     390 ..     344     410 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0047
       AAA_7 31 knkkpvllvGptGtGKtviikdllkkldkekylsltinfs 70
                ++++ + lvGp G GKt++++ l   l++++    +i f 
  CTQ27200.1 31 RAGYVTGLVGPDGAGKTTLMRMLAGLLKPDEGRASVIGFD 70
                56666779*************9999999888887777775 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.086
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkldkekylsltin 68 
                 +k++  + l Gp G GK+++ k ++  l +++ + l++ 
  CTQ27200.1 352 VKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGKALVLG 390
                 6666777799**********9988766665555555555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.097        46      26      42 ..      35      51 ..      28      61 .. 0.87
   2 ?   -2.7   0.0       6.9   3.2e+03     137     188 ..     139     186 ..     118     210 .. 0.72
   3 ?    6.4   0.0     0.011       5.4      26      45 ..     357     376 ..     335     388 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.097
                EEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlld 42
                +t +vGp G+GK+ l+ 
  CTQ27200.1 35 VTGLVGPDGAGKTTLMR 51
                6889*********9986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.9
                 S-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 137 LSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksk 188
                 LSgG k+ + la       v    + llDe     D   ++++ ++++e   
  CTQ27200.1 139 LSGGMKQKLGLAC----TLVGDPKVLLLDEPGVGVDPISRRELWQMVHELAG 186
                 6777666444443....33444445678888888888888888888888764 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.011
                 EEEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAil 45 
                 +  ++GpNG+GKs  +  ++
  CTQ27200.1 357 IFGLLGPNGAGKSTTFKMMC 376
                 45689********9887665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0      0.02       9.5       4      38 ..      35      69 ..      32     100 .. 0.74
   2 ?    2.2   0.0      0.37   1.8e+02       3      23 ..     356     376 ..     354     413 .. 0.79
   3 ?    0.7   0.0         1   4.8e+02      63      98 ..     477     516 ..     437     531 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.02
      AAA_14  4 ilvitGaRrvGKTtllkqlikellvkkesilyinl 38
                +  ++G+  +GKTtl++ l+  l  ++ +   i +
  CTQ27200.1 35 VTGLVGPDGAGKTTLMRMLAGLLKPDEGRASVIGF 69
                56799***********9998554444444444444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.37
      AAA_14   3 kilvitGaRrvGKTtllkqli 23 
                 +i  + G+  +GK+t  k + 
  CTQ27200.1 356 EIFGLLGPNGAGKSTTFKMMC 376
                 678899*********977664 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 1
      AAA_14  63 ekktylflDEiqev......pewekalkslvdegknldvivt 98 
                 ++  +lflDE          +e++ +++s+vd+g  + v+vt
  CTQ27200.1 477 HEPDILFLDEPTSGvdpltrREFWLHINSMVDKG--VTVMVT 516
                 4678899999887778888888999999999988..667666 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0015      0.73       3      22 ..      40      59 ..      38      73 .. 0.84
   2 ?    0.8   0.1      0.71   3.3e+02       3      16 ..     362     375 ..     361     387 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0015
                     ESTTSSHHHHHHHHHHHHHH CS
  Thymidylate_kin  3 GlDGaGKttqaellkerlke 22
                     G DGaGKtt +++l+  lk 
       CTQ27200.1 40 GPDGAGKTTLMRMLAGLLKP 59
                     99************999985 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.71
                      ESTTSSHHHHHHHH CS
  Thymidylate_kin   3 GlDGaGKttqaell 16 
                      G +GaGK+t  +++
       CTQ27200.1 362 GPNGAGKSTTFKMM 375
                      889******98876 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0026       1.2       2      34 ..      39      71 ..      38      81 .. 0.90
   2 ?    2.0   0.1      0.31   1.5e+02       2      18 ..     361     377 ..     360     395 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0026
  ATP_bind_1  2 vGpaGsGKttfvgalseilelrgrsvavvNLDP 34
                vGp G+GKtt+++ l+ +l+  + +  v+  DP
  CTQ27200.1 39 VGPDGAGKTTLMRMLAGLLKPDEGRASVIGFDP 71
                8*****************999999999999999 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.31
  ATP_bind_1   2 vGpaGsGKttfvgalse 18 
                 +Gp G+GK+t  + +  
  CTQ27200.1 361 LGPNGAGKSTTFKMMCG 377
                 7*********9887765 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.17        79      27      47 ..     133     153 ..     127     183 .. 0.66
   2 ?    4.7   0.0     0.077        36      62      82 ..     477     497 ..     465     501 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.17
     SbcCD_C  27 srssgtlSGGekqflaylala 47 
                 +r +g+lSGG kq+l   + +
  CTQ27200.1 133 ERLAGKLSGGMKQKLGLACTL 153
                 566778888888877766654 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.077
     SbcCD_C  62 palrlvfLDEAFsklDeesia 82 
                 + ++++fLDE  s++D+ +++
  CTQ27200.1 477 HEPDILFLDEPTSGVDPLTRR 497
                 5689************97776 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.15        69      30      60 ..      40      71 ..      36      78 .. 0.80
   2 ?    6.9   0.1     0.013       6.1      26      57 ..     358     388 ..     347     392 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.15
       DUF87 30 gsTGsGKSntvavLleelle.kkgatililDp 60
                g  G+GK+++++ L   l   + +a+++ +Dp
  CTQ27200.1 40 GPDGAGKTTLMRMLAGLLKPdEGRASVIGFDP 71
                556********988766665888889999997 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.013
       DUF87  26 lAilgsTGsGKSntvavLleellekkgatili 57 
                 ++ lg  G+GKS+t + ++  l+   +++ l+
  CTQ27200.1 358 FGLLGPNGAGKSTTFKMMCGLLV-PTSGKALV 388
                 789999************99998.55555555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0056       2.6       4      20 ..      38      54 ..      37      67 .. 0.86
   2 ?    1.2   0.1       0.8   3.8e+02       4      17 ..     360     373 ..     358     376 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0056
      AAA_28  4 itGgestGKTtlleaLa 20
                ++G+ ++GKTtl++ La
  CTQ27200.1 38 LVGPDGAGKTTLMRMLA 54
                68*************98 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.8
      AAA_28   4 itGgestGKTtlle 17 
                 ++G+ ++GK+t+ +
  CTQ27200.1 360 LLGPNGAGKSTTFK 373
                 78*********976 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0063         3       3      21 ..      38      56 ..      37      82 .. 0.87
   2 ?    1.9   0.3      0.64     3e+02       3      15 ..     360     372 ..     359     379 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0063
      AAA_18  3 ltGtpGvGKttlakeLskr 21
                l G+ G+GKttl + L+ +
  CTQ27200.1 38 LVGPDGAGKTTLMRMLAGL 56
                89************99755 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.64
      AAA_18   3 ltGtpGvGKttla 15 
                 l G+ G+GK+t  
  CTQ27200.1 360 LLGPNGAGKSTTF 372
                 78*********75 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.013       6.1       4      26 ..      38      60 ..      35      70 .. 0.80
   2 ?    2.4   0.1      0.27   1.3e+02       4      23 ..     360     379 ..     357     387 .. 0.84
   3 ?   -2.4   0.0       8.1   3.8e+03      95     143 ..     478     528 ..     470     536 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.013
                EE--TTSSHHHHHHHHHHHH... CS
    NTPase_1  4 iTGppGvGKtTlvkkvlellkss 26
                + Gp G GKtTl++ ++ llk +
  CTQ27200.1 38 LVGPDGAGKTTLMRMLAGLLKPD 60
                679*************9999865 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.27
                 EE--TTSSHHHHHHHHHHHH CS
    NTPase_1   4 iTGppGvGKtTlvkkvlell 23 
                 + Gp G GK+T +k ++ ll
  CTQ27200.1 360 LLGPNGAGKSTTFKMMCGLL 379
                 669**********9998877 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 8.1
                 HH-EEEE--..-STTGGG-HHHHHHHHHHHTTTSEEEEE--SS--SHHHHH CS
    NTPase_1  95 eadviviDE..iGkmElkskkfkeaveevLksekpvlavihrrkdlalvee 143
                 e+d++ +DE   G   l+ ++f   ++ ++++++ v+++ h  ++ +  ++
  CTQ27200.1 478 EPDILFLDEptSGVDPLTRREFWLHINSMVDKGVTVMVTTHFMDEAEYCDR 528
                 566666666333555567788888899999999999999887766555555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1    0.0024       1.1       5      25 ..      38      58 ..      34      69 .. 0.86
   2 ?   -0.3   0.2       1.9     9e+02       5      17 ..     360     372 ..     357     380 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0024
                EEC-TTTCHHHHHHHHHHHHC CS
       NACHT  5 lqGeaGsGKTtLlqklalawa 25
                l G+ G GKTtL++ la +++
  CTQ27200.1 38 LVGPDGAGKTTLMRMLAGLLK 58
                78**************98887 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.9
                 EEC-TTTCHHHHH CS
       NACHT   5 lqGeaGsGKTtLl 17 
                 l G++G GK+t  
  CTQ27200.1 360 LLGPNGAGKSTTF 372
                 68********965 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.2    0.0043         2      30      50 ..      30      50 ..      21      56 .. 0.89
   2 ?    0.9   0.1       0.6   2.8e+02      32      49 ..     354     371 ..     348     396 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0043
      AAA_25 30 lpagelallaGapgtGKttla 50
                ++ag ++ l+G+ g+GKttl 
  CTQ27200.1 30 IRAGYVTGLVGPDGAGKTTLM 50
                6899***************97 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.6
      AAA_25  32 agelallaGapgtGKttl 49 
                 +ge+  l G+ g+GK+t 
  CTQ27200.1 354 RGEIFGLLGPNGAGKSTT 371
                 67778899********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              38  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4059.80
//
Query:       CTQ27201.1  [L=331]
Description: putative membrane fusion protein (MFP) component of efflux pump, membrane anchor; UPF0194 family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-19   69.3   5.7    3.2e-18   65.7   5.7    2.5  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
      1e-16   61.5   0.0    4.1e-13   50.0   0.0    3.0  3  HlyD_3           HlyD family secretion protein
    6.7e-11   41.8   0.0    6.7e-11   41.8   0.0    3.3  4  Biotin_lipoyl_2  Biotin-lipoyl like
      0.003   17.4  30.9     0.0047   16.8  21.8    2.7  2  OEP              Outer membrane efflux protein
  ------ inclusion threshold ------
      0.044   13.6   0.0        2.1    8.2   0.0    2.3  2  Biotin_lipoyl    Biotin-requiring enzyme
      0.056   13.0   2.8      0.085   12.5   2.8    1.2  1  PI3K_P85_iSH2    Phosphatidylinositol 3-kinase regulatory sub
      0.083   12.9   0.0       0.39   10.7   0.0    2.2  3  Big_1            Bacterial Ig-like domain (group 1)
       0.14   12.4   0.0       0.68   10.2   0.0    2.0  2  Peptidase_M23    Peptidase family M23
        0.3   11.0   4.9       0.35   10.8   4.9    1.1  1  TFIIA            Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   5.7   1.6e-21   3.2e-18       9     212 ..      36     318 ..      29     320 .. 0.76

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 1.6e-21
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXX................................... CS
    HlyD_D23   9 vGtvayderrlarvsarveGwveklyvnatgdkVkkGqpLael....yspelvaaqeeyllalk................................... 68 
                  G+v++   r++++s rv G+  +l+v+ +gd++++Gq+L el    y   l++aq++  +a++                                   
  CTQ27201.1  36 YGNVDI---RTVNMSFRVGGRLASLTVD-EGDSIRAGQTLGELdrapYENALLQAQANVSTAQAqydlmmagyraeeiaqaaaavkqaqaaydyaqnfy 130
                 555554...788999*************.*************96555678999999999999999*************999999999999999999999 PP

                 .....................XXXXXXXX.......XXXXXXXXXXXXXX..XXXXXXXXXXX...........XXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  69 .....................akkklkkke......lleaarerLrllgv..seeqiaelekt...........gkvqktvtvkapisGvVteknvreG 127
                                      +       +       l++a+++Lr+++     ++ia+ +++           +   + + ++ap +G+ ++++v  G
  CTQ27201.1 131 qrqlglrassaisandlenarS-------SrdqaqaTLKSAQDKLRQYRAgnRPQEIAQAKASleqaqaalaqaKLDLHDTVLTAPSDGTLMTRAVEPG 222
                 9988888888887777765531.......0333455566666666655431133445443333100000000003333456789*************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXXXXX CS
    HlyD_D23 128 qyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyptvdpetRtv...........kvRieldNpdgkLkpgm 212
                  ++++g t++t++    VWv a v e++l++ ++gq+v + +++ p+k ++Gk+ +++p+ + + +tv           ++Ri++ ++dg+L+ gm
  CTQ27201.1 223 TMLNAGGTVLTLSLTHPVWVRAYVDEKNLGQAQPGQEVLLYTDSRPDKPYHGKIGFVSPSAEFTPKTVetpdlrtdlvyRLRIVVTDADGALRQGM 318
                 ***********************************************************9986666652222222233367999999999999998 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0022       4.3       6      48 ..      50      96 ..      49     120 .. 0.82
   2 !   50.0   0.0     2e-16   4.1e-13       1      85 [.     205     290 ..     205     317 .. 0.82
   3 ?   -0.2   0.0      0.83   1.7e+03      43      65 ..     308     328 ..     291     331 .] 0.70

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0022
      HlyD_3  6 vdGvvvelnveegevvqagdelleiip...pdtll.veakvpaadlg 48
                v+G++++l v eg+ ++ag++l e+     ++ ll ++a v+ a+++
  CTQ27201.1 50 VGGRLASLTVDEGDSIRAGQTLGELDRapyENALLqAQANVSTAQAQ 96
                789*********************98776655544577777776665 PP

  == domain 2  score: 50.0 bits;  conditional E-value: 2e-16
      HlyD_3   1 tlrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptv..daktg 85 
                 +l+Ap dG++    ve+g +++ag ++l++  +  ++v+a+v++++lg+   +gq+v l  d+ +d+++ gki  +sp++  ++kt 
  CTQ27201.1 205 VLTAPSDGTLMTRAVEPGTMLNAGGTVLTLSLTHPVWVRAYVDEKNLGQA-QPGQEVLLYTDSRPDKPYHGKIGFVSPSAefTPKTV 290
                 589**********************************************7.6**************************662244443 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.83
      HlyD_3  43 paadlgsikkkgqkvtlkldqgs 65 
                  +ad + ++ +g++vt+ ++ g+
  CTQ27201.1 308 TDADGA-LR-QGMPVTISFSHGN 328
                 444444.56.9*****9999665 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   3.4e-14   6.7e-11       2      49 ..      43      90 ..      41      91 .. 0.96
   2 ?   -3.0   1.4       3.5   6.9e+03      39      47 ..     113     121 ..     108     123 .. 0.75
   3 ?   -2.4   1.9       2.2   4.4e+03      43      49 ..     188     194 ..     178     201 .. 0.58
   4 ?   -2.9   0.0       3.2   6.4e+03       6      27 ..     207     228 ..     205     234 .. 0.76

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 3.4e-14
  Biotin_lipoyl_2  2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaql 49
                     +v+++ +v Gr+a+l V +G+ + aG++L elD   +++al qa+a++
       CTQ27201.1 43 TVNMSFRVGGRLASLTVDEGDSIRAGQTLGELDRAPYENALLQAQANV 90
                     69999*****************************************97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.5
  Biotin_lipoyl_2  39 qlalaqaea 47 
                      ++a++qa+a
       CTQ27201.1 113 AAAVKQAQA 121
                      478899988 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.2
  Biotin_lipoyl_2  43 aqaeaql 49 
                       qa+a+l
       CTQ27201.1 188 EQAQAAL 194
                      3444433 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 3.2
  Biotin_lipoyl_2   6 aapvsGrVaqlnVkdGqrVkaG 27 
                      +ap +G++ + +V+ G   +aG
       CTQ27201.1 207 TAPSDGTLMTRAVEPGTMLNAG 228
                      6788999988888888777777 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.9     0.013        26     156     183 ..      77     104 ..      63     110 .. 0.62
   2 !   16.8  21.8   2.4e-06    0.0047      81     179 ..     112     204 ..     108     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.013
         OEP 156 lqaqvrllqaraelaeaeqqlqlaraqL 183
                 + +++ llqa+a+  +a++q+ l +a++
  CTQ27201.1  77 APYENALLQAQANVSTAQAQYDLMMAGY 104
                 4456666666666666666666666554 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 2.4e-06
         OEP  81 rrarvkaakaqleaaeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqla 179
                   a+vk+a+a ++ a++ ++  ++ lr+  a + ++l++a+ ++++a+++lk+a++ l++    y+aG   + +++qa+++l qa+a+la+a+ +l+++
  CTQ27201.1 112 AAAAVKQAQAAYDYAQNFYQ-RQLGLRASSAISANDLENARSSRDQAQATLKSAQDKLRQ----YRAGNRPQ-EIAQAKASLEQAQAALAQAKLDLHDT 204
                 56899*********998775.5789******************************99975....56666667.7777*****************99875 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0011       2.1      48      72 ..      49      73 ..      42      75 .. 0.73
   2 ?    2.9   0.0     0.049        97      44      72 ..     205     233 ..     192     234 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0011
                   SSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl 48 pkaGvvkeilvkeGdtvevgdllak 72
                   ++ G+++++ v+eGd++ +g+ l +
     CTQ27201.1 49 RVGGRLASLTVDEGDSIRAGQTLGE 73
                   5568888888888888888887765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.049
                    EEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtvevgdllak 72 
                     ++ap++G++    v+ G+++++g  +++
     CTQ27201.1 205 VLTAPSDGTLMTRAVEPGTMLNAGGTVLT 233
                    68899999999999999999998877765 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.8   4.3e-05     0.085      17      97 ..      81     194 ..      69     207 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
  PI3K_P85_iSH2  17 eklrevskqlqekskeydqlkeeyn..kiseeiqlkrqaleaFneaikmFeeqiklqekfskeaq............................... 79 
                    + l + + ++ + + +yd +   y   +i +  +  +qa+ a+  a + +++q+ l ++    a+                               
     CTQ27201.1  81 NALLQAQANVSTAQAQYDLMMAGYRaeEIAQAAAAVKQAQAAYDYAQNFYQRQLGLRASSAISANdlenarssrdqaqatlksaqdklrqyragnr 176
                    567778888999999999999999622699999**************************9999965555555555554444444444444444444 PP

  PI3K_P85_iSH2  80 ehEieklqenleqlksrl 97 
                    ++Ei + + +leq+++ l
     CTQ27201.1 177 PQEIAQAKASLEQAQAAL 194
                    555555555555555544 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         6   1.2e+04      47      56 ..     156     165 ..     156     167 .. 0.72
   2 ?   -3.4   0.0         5   9.9e+03      18      31 ..     252     265 ..     249     267 .. 0.78
   3 ?   10.7   0.0    0.0002      0.39       9      34 ..     303     328 ..     300     330 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6
       Big_1  47 katvtltstk 56 
                 +a++tl+s +
  CTQ27201.1 156 QAQATLKSAQ 165
                 5788888865 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5
       Big_1  18 gnpvagatVtfsvs 31 
                 g++ +g++V + ++
  CTQ27201.1 252 GQAQPGQEVLLYTD 265
                 78889999988776 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.0002
       Big_1   9 ltatvkDangnpvagatVtfsvsgga 34 
                 l+++v+Da+g   +g +Vt+s s+g+
  CTQ27201.1 303 LRIVVTDADGALRQGMPVTISFSHGN 328
                 789******************99976 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00034      0.68      44      73 ..      46      75 ..      25      92 .. 0.79
   2 ?   -1.0   0.0       1.1   2.2e+03      17      36 ..     207     231 ..     200     260 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00034
                   CEEEEEEEESEESS-TTEEE-TTCEEEEEB CS
  Peptidase_M23 44 gystlyahlskisvkegqkVkaGqvIGtvg 73
                     + + + l +++v+eg+ ++aGq++G+  
     CTQ27201.1 46 MSFRVGGRLASLTVDEGDSIRAGQTLGELD 75
                   456666789999***************976 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
                    EESSSEEEEEEEEET....TT.EEE CS
  Peptidase_M23  17 lAaadGtVvfagkke....gy.Gnv 36 
                    +A++dGt +    +     ++ G+v
     CTQ27201.1 207 TAPSDGTLMTRAVEPgtmlNAgGTV 231
                    5666666633322111222331333 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.9   0.00018      0.35     111     220 ..      83     192 ..      45     253 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
       TFIIA 111 ataatfslpakleppvqipagvtlqtasgqlykvnv.qasgaqqiaaqplqqvvqq..sqgsaaqssvaalqaqsqqaqalaepqqq.lekqqqqqqqq 205
                   +a+ ++ +++ ++  ++ag+  +   + +    v qa++a   a++  q ++    ++++++++++++  +++ qaqa+ ++ q+ l+  q +  ++
  CTQ27201.1  83 LLQAQANVSTAQAQYDLMMAGYRAEEIAQAA--AAVkQAQAAYDYAQNFYQRQL-GlrASSAISANDLENARSSRDQAQATLKSAQDkLR--QYRAGNR 176
                 3445555555566666666777776666432..334245555455544444443.24566667777777777766666666666666333..2222222 PP

       TFIIA 206 qqqqqqq.qvqqqqqe 220
                 +q+  q+ ++ +q q+
  CTQ27201.1 177 PQEIAQAkASLEQAQA 192
                 2222222122222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1605  (0.0895198); expected 358.6 (0.02)
Passed bias filter:                      846  (0.0471861); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 2385.36
//
Query:       CTQ27202.1  [L=219]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-38  130.2   1.1    8.9e-38  129.1   1.1    1.6  1  TetR_C_32  Tetracyclin repressor-like, C-terminal domain
    1.2e-12   47.3   0.6    1.2e-12   47.3   0.6    1.9  2  TetR_N     Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.027   14.6   0.0      0.071   13.3   0.0    1.7  1  PAC3       Proteasome assembly chaperone 3


Domain annotation for each model (and alignments):
>> TetR_C_32  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   1.1   1.5e-41   8.9e-38       2     125 .]      91     213 ..      90     213 .. 0.97

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 1.5e-41
   TetR_C_32   2 rerLrafirrllarllseeesewwakfmaREqlePtealeriyqeeirPlhealerivaellgedaedeevrlrtlsivGqclafriareavlrllgwe 100
                 r+++ +++++++  ll+++++ + +kf+ REql+Pt+a++ i+q++i+Plh++l+r++a+++g++a+d+++ l+t++++G++lafr++re++l ++gw+
  CTQ27202.1  91 RDLILSACHNMIL-LLTQDDTVNLSKFISREQLAPTAAYHLIHQQVIAPLHHYLTRLIAAWTGCEASDTQMILHTHALLGEVLAFRLGRETILLRTGWT 188
                 788999*******.56666******************************************************************************** PP

   TetR_C_32 101 sidpeeaediealaehilrfslagl 125
                 ++d++++e+i ++++++++f+l+gl
  CTQ27202.1 189 QFDAQKTEQIFEVITCHIDFILHGL 213
                 **********************997 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.6   2.1e-16   1.2e-12       1      47 []      12      57 ..      12      57 .. 0.96
   2 ?   -3.3   0.0       1.4   8.3e+03       3      21 ..      74      92 ..      74      95 .. 0.69

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 2.1e-16
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                +++aA + f+e+G +at +r+IA++AG + +a+ +yF+sK++L++a+
  CTQ27202.1 12 LIAAAIAQFGEYGQHAT-TRDIAAQAGQNIAAITYYFGSKDDLYLAC 57
                799************88.**************************986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.4
                HHHHHHHHHHHTTT--HHH CS
      TetR_N  3 daArelfaerGydattvre 21
                +aA+ l+a +  d+  +r+
  CTQ27202.1 74 EAAEHLLAGEAPDRQAIRD 92
                5888888877666655555 PP

>> PAC3  Proteasome assembly chaperone 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.071       3      55 ..      17      67 ..      15      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
        PAC3  3 iTqigkiGtlvsvtpdsksdelseptytvrvllGkdddllrvyarqLiekisl 55
                i q+g+ G+   ++ d++++  ++    ++  +G+ ddl+ ++a+ ++++i+ 
  CTQ27202.1 17 IAQFGEYGQHATTR-DIAAQAGQN-IAAITYYFGSKDDLYLACAQWIADFIGD 67
                88999999988888.887775555.8999*********************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1765.16
//
Query:       CTQ27203.1  [L=307]
Description: putative bacterial regulatory protein, LysR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-26   92.4   0.1    3.3e-26   92.0   0.1    1.1  1  LysR_substrate  LysR substrate binding domain
    1.7e-19   69.5   0.4    2.2e-18   65.9   0.5    2.2  2  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.1   3.7e-30   3.3e-26       8     207 ..     103     299 ..      99     301 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 3.7e-30
                     EEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGGGC CS
  LysR_substrate   8 LrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsledLa 102
                     Lri   p+++  +l+p+l +fr++ P ++++l+++   e ++  +++ +D+ ir+g  +++ l +r + +e+++++ ++++ La +   + edL 
      CTQ27203.1 103 LRIHSAPSFGLLWLMPRLDKFRQAWPALKISLTCSY--ESIQFSRDN-IDIDIRHGLSQWPTLLVRTIKNERVLPYSAASY-LASHPVQAVEDLL 193
                     9***********************************..****77777.*********************************.****777****** PP

                     TSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTCCCHHH CS
  LysR_substrate 103 deplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgrelspa 196
                       +li+ +    ++  ++ + + +g + +  + ++   + +++++ G+G+ l +++++  ++++g+l  +  +e  +p  + ++v ++  e+ ++
      CTQ27203.1 194 ACDLIHSDSTLINWSNWLSWHKVRGWHKNFIFNFDRSYMSIEAARMGMGVILESNLLAGGHVRQGQLTPVFADERSMPvGAHHFVLPHANEQKEK 288
                     ******887777********************************************************666666699****************** PP

                     HHHHHHHHHHH CS
  LysR_substrate 197 vrafidflrea 207
                     v++f ++++ +
      CTQ27203.1 289 VQRFFAWVAGE 299
                     *******9766 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.5   2.5e-22   2.2e-18       1      60 []      15      74 ..      15      74 .. 0.98
   2 ?    0.9   0.0     0.052   4.6e+02      30      48 ..     182     200 ..     176     204 .. 0.89

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 2.5e-22
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr +++f++va +gs++ AAe L+++ +avs+qi++LE+ lg +Lf R+++g++LT+ Ge
  CTQ27203.1 15 LRNIQAFIEVAATGSLNLAAENLNITASAVSHQIASLEHFLGKKLFSRSSKGVTLTAVGE 74
                6899*****************************************************997 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.052
                 HHHHHHHHHHHHTS-SEEE CS
       HTH_1  30 vsrqikrLEeelgvpLfeR 48 
                 +s+ +++ E++l ++L++ 
  CTQ27203.1 182 ASHPVQAVEDLLACDLIHS 200
                 68999***********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2353.42
//
Query:       CTQ27204.1  [L=443]
Description: D-glucarate permease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-65  221.7  58.6    1.8e-53  181.7  36.4    2.0  2  MFS_1     Major Facilitator Superfamily
    2.9e-07   30.1  20.0    1.4e-05   24.6   4.7    2.5  2  MFS_4     Uncharacterised MFS-type transporter YbfB
    4.2e-05   22.6  37.6    8.6e-05   21.6  14.8    2.6  2  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
      0.044   14.0   0.7      0.086   13.1   0.7    1.4  1  DUF4381   Domain of unknown function (DUF4381)
        5.6    6.4   8.1       0.36   10.3   2.2    2.0  2  DUF1129   Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.7  36.4     5e-57   1.8e-53       1     327 [.      25     379 ..      25     382 .. 0.94
   2 !   53.9  14.2   3.8e-18   1.3e-14      53     176 ..     316     442 ..     315     443 .] 0.87

  Alignments for each domain:
  == domain 1  score: 181.7 bits;  conditional E-value: 5e-57
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlg 98 
                 ++l++++++++r+++g++lp ++ ++++i+  e+g ++++++lg+av+++p+G+++ + G r ++ l++++f+++++l+  + ss++ l ++r+  Gl 
  CTQ27204.1  25 IFLVYAINYADRTNIGAVLP-FIIDEFHINNFEAGAIASMFFLGYAVSQIPAGFFIAKRGTRGLVSLSIFGFSAFTWLMGtV-SSVFGLKLVRLGLGLS 121
                 699*****************.999***************************************9999999999995666634.9999************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 +g    + a+ i  wfp++e++ a+g++ a++ +++i+ p+l+ ++a  +gWr+vf+ +ai +++a++ ++ll+  +p e++ +s+ e+          
  CTQ27204.1 122 EGPCPVGLASTINNWFPPKEKATATGVYIAATMFAPIIVPPLAVWIAVTWGWRWVFFSFAIPGIVAAIAWYLLVKSKPAESGFVSQSELAeinagresh 220
                 *****************************************************************************************9********* PP

       MFS_1 189 .....................kgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallag 265
                                        ++ ap+ +  k l++++ ++  +l+ + +++ +++gllt++plyl++ +g++ ++++g++ ++++++g+i+a+ +g
  CTQ27204.1 221 nnsvreniliaerftwldkiiRVKKMAPIDT-AKGLFTSKNILgDCLAYFMMVS-VLYGLLTWIPLYLVKERGFD-VMSMGFVASMPCIGGFIGAIGGG 316
                 *****99988888888886655555555555.9999999999888888888887.99******************.*********************** PP

       MFS_1 266 rlsdr.lgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasd 327
                 ++sd+ lgrrr  ++++ ++++++++l++l+ + s++++ ++l+++Gf+l + +p+++a+ + 
  CTQ27204.1 317 WVSDKlLGRRRKPTMMFTAVSTVVMMLIMLNIPASTLAVCIGLFFVGFCLNIGWPAFTAYGMA 379
                 ***999***************************88888888*****************99875 PP

  == domain 2  score: 53.9 bits;  conditional E-value: 3.8e-18
       MFS_1  53 Grlsdr.fG.rrr.vlllglllfalglllll.fasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.s 146
                 G++sd+ +G rr+ +++++++++++++l++l +++s  +++++ ++ G++  +++pa  a+  +++  +  + a +++++g +lG  ++p+++g+l+  
  CTQ27204.1 316 GWVSDKlLGrRRKpTMMFTAVSTVVMMLIMLnIPASTLAVCIGLFFVGFCLNIGWPAFTAYGMAVSDSKTYPIASSIINSGGNLGGFVAPMAAGFLLdK 414
                 9*****77955559************7777755355559**********************************************************66 PP

       MFS_1 147 slgWravfyilaivsllafvlfllllpeep 176
                  +++ +vf  ++i +++++v+  +l+++ep
  CTQ27204.1 415 TGSFNSVFTYFGICAAIGLVV--ILFLDEP 442
                 666****99999999999774..5555554 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   4.7   3.9e-09   1.4e-05      15     170 ..      42     199 ..      36     224 .. 0.79
   2 !   10.6   7.3     7e-05      0.25      19     167 ..     286     438 ..     278     441 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.9e-09
       MFS_4  15 iLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaa 113
                 +LP ++ e +++  +ag +a++ +lGY v  + a f  +++ +R  +  +++   + +  m+ ++s++ + l+R+++G++ +   v  +s++ +   ++
  CTQ27204.1  42 VLPFIIDEFHINNFEAGAIASMFFLGYAVSQIPAGFFIAKRGTRGLVSLSIFGFSAFTWLMGTVSSVFGLKLVRLGLGLSEGPCPVGLASTINNWFPPK 140
                 8*************************************************************************************9999996665555 PP

       MFS_4 114 rrervgallfaG.vGlGiavsgllvllllqlglsassl.Wlalavlsavllllvalllp 170
                 ++++  ++  a    + i+v+ l+v+++++ g+ + +    + ++++a++  l++   p
  CTQ27204.1 141 EKATATGVYIAAtMFAPIIVPPLAVWIAVTWGWRWVFFsFAIPGIVAAIAWYLLVKSKP 199
                 555544444333034479*********99998888754344444444444433333333 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 7e-05
       MFS_4  19 llaegqlslsqagllaaaNylGYLvGallaafalsagaeRlr...llagllatvllllam.altesfaaflliRflaGvasAvvlvfgsslvlahaaaa 113
                 l++e ++++  +g++a++  +G ++Ga+       +   R r   ++  +++tv+++l m  ++ s +a+ +  f  G    +   + ++  +a +  +
  CTQ27204.1 286 LVKERGFDVMSMGFVASMPCIGGFIGAIGGGWVSDKLLGRRRkptMMFTAVSTVVMMLIMlNIPASTLAVCIGLFFVGFCLNIGWPAFTAYGMAVSDSK 384
                 78999***********************8766556666666667888888888888887735778899999999*******99999999999***9999 PP

       MFS_4 114 rrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllval 167
                   ++  +++ +G  lG  v+ +++ +ll +  s +s+   +++ +a+ l++++ 
  CTQ27204.1 385 TYPIASSIINSGGNLGGFVAPMAAGFLLDKTGSFNSVFTYFGICAAIGLVVILF 438
                 9**********************************************9998765 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2  14.3    0.0011       4.1      46     194 ..      55     197 ..      29     275 .. 0.86
   2 !   21.6  14.8   2.4e-08   8.6e-05      46     193 ..     295     441 ..     286     442 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0011
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyq 144
                    g+i+s+f++G +++++ ag+++ + G +     +++ f++ + l+++     sv  l + R+ +G++ G + v    +i+   p+k   + +++y 
  CTQ27204.1  55 FEAGAIASMFFLGYAVSQIPAGFFIAKRGTRGLVSLSIFGFSAFTWLMGTVS---SVFGLKLVRLGLGLSEGPCPVGLASTINNWFPPKEKATATGVYI 150
                 56799***********************************************...99999999*********999988888888887777766666664 PP

                 HHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS--- CS
    Sugar_tr 145 laitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllflPES 194
                  a     ++a i+   l   +  ++gwr+ +++ ++p ++ +i++++l  S
  CTQ27204.1 151 AA----TMFAPIIVPPLaVWIAVTWGWRWVFFSFAIPGIVAAIAWYLLVKS 197
                 44....45555555555233333688**************99999887555 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 2.4e-08
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHT.T..HHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrf.G..RkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvs 141
                 + +g+++s+  +G++iG++ +g+++d++ G  Rk++++++av +v+  +++  ++   s+ ++++g ++vG+++ +     + y   ++  k   +  s
  CTQ27204.1 295 MSMGFVASMPCIGGFIGAIGGGWVSDKLlGrrRKPTMMFTAVSTVVMMLIMLNIP--ASTLAVCIGLFFVGFCLNIGWPAFTAYGMAVSDSKTYPIASS 391
                 679***********************9656335789*******************..78**************************************** PP

                 HHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS-- CS
    Sugar_tr 142 lyqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllflPE 193
                 + +++  +G +va +   +l +kt++   +   +    + a + l+++lfl+E
  CTQ27204.1 392 IINSGGNLGGFVAPMAAGFLlDKTGS---FNSVFTYFGICAAIGLVVILFLDE 441
                 *************9987776699999...666666666666666666666665 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   2.4e-05     0.086       4      63 ..     156     218 ..     154     230 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.4e-05
     DUF4381   4 rDihlPepvswwPpapGwwlllaalllllllvlalwllrrrkrn......rreAlreLaalradea 63 
                 ++i++P+   w   ++Gw  + +  ++ +++++++w+l  + ++          ++eLa+++a+++
  CTQ27204.1 156 APIIVPPLAVWIAVTWGWRWVFFSFAIPGIVAAIAWYLLVKSKPaesgfvS---QSELAEINAGRE 218
                 689***************888877777777777777777555553443333...555555552223 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4       1.2   4.3e+03     163     185 ..     148     170 ..     144     179 .. 0.74
   2 ?   10.3   2.2    0.0001      0.36      77     164 ..     257     348 ..     232     360 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.2
     DUF1129 163 lftlvallpaviNpvLpplvlii 185
                 ++++++++ + i p L  ++ + 
  CTQ27204.1 148 VYIAATMFAPIIVPPLAVWIAVT 170
                 67777888888888888777654 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0001
     DUF1129  77 pwlmalDnsLlllalfallfgilalfskkkqtas....iGlitlllvalvgGlamvlvyrlltrekkkkkrpplwkrllilllllvvwlvlf 164
                 ++ ++l   L +++++++l+g+l+++     ++     +++  ++++  +gG++  +   +++ +    +r+p++  +++++++++++++ +
  CTQ27204.1 257 TSKNILGDCLAYFMMVSVLYGLLTWIPLYLVKERgfdvMSMGFVASMPCIGGFIGAIGGGWVSDKLLGRRRKPTMMFTAVSTVVMMLIMLNI 348
                 466789999***************9987665555566678888899999**************98555566666666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3183.66
//
Query:       CTQ27205.1  [L=249]
Description: Uncharacterized short-chain type dehydrogenase/reductase y4mP [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-67  225.3   4.7    8.4e-67  225.1   4.7    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    2.1e-53  180.7   2.9    2.6e-53  180.4   2.9    1.1  1  adh_short     short chain dehydrogenase
    1.6e-08   34.6   3.4    3.1e-08   33.7   3.4    1.4  1  KR            KR domain
  ------ inclusion threshold ------
      0.027   14.4   0.3      0.043   13.7   0.3    1.4  1  3HCDH_N       3-hydroxyacyl-CoA dehydrogenase, NAD binding do


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.1   4.7   1.9e-70   8.4e-67       1     233 [.      12     246 ..      12     247 .. 0.93

  Alignments for each domain:
  == domain 1  score: 225.1 bits;  conditional E-value: 1.9e-70
                   TTT..TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   1 Gaa..sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsre 93 
                   Gaa  +g+G+a+Ak++ae+Ga+vv+ dln ea    +++a++lg+  + l+++V+de qv+a++e++ +k+g++D+lvnnagi+++   ++++++r+
    CTQ27205.1  12 GAAsaRGLGFATAKLFAENGAKVVIIDLNGEA---SKTAAAALGEGhLgLAANVADEVQVQAAIEQILAKYGRVDVLVNNAGITQP--LKLMDIKRA 103
                   88889**************************9...34444455544356*************************************..9******** PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTT..HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHH CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnyn..aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfd 186
                   ++d +ldv+l++++l+++a++p m+++  gsiv++ssv+a+r+       +y+aaKa++ +l+r++A+elgp+++RvN++ pg+i+T++++g   +d
    CTQ27205.1 104 NYDAVLDVSLRGTLLMSQAVIPTMRAQksGSIVCISSVSAQRGGGIFGgpHYSAAKAGVLGLARAMARELGPDNVRVNCITPGLIQTDITAGKL-TD 199
                   **********************8887778*************97766666***************************************98876.89 PP

                   HHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 187 elleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   ++ +++ a +p++rlg++ ++a+aalfL sd++sy tG tl v+gG+
    CTQ27205.1 200 DMTANILAGIPMNRLGDAIDIARAALFLGSDLSSYSTGITLDVNGGM 246
                   **********************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.4   2.9   5.9e-57   2.6e-53       1     189 [.       6     195 ..       6     200 .. 0.95

  Alignments for each domain:
  == domain 1  score: 180.4 bits;  conditional E-value: 5.9e-57
                 SEEEEESTT..SHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCS CS
   adh_short   1 kvvlvtGas..sGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsels 97 
                 kv+++tGa+  +G+G a+ak +a++Gakvv++d + e+ +++a+ l+e     l ++++v+d+ +v+a++e++ +k+g++dvLvnNAGit++ +  +++
  CTQ27205.1   6 KVAIITGAAsaRGLGFATAKLFAENGAKVVIIDLNGEASKTAAAALGEG---HLGLAANVADEVQVQAAIEQILAKYGRVDVLVNNAGITQPLKLMDIK 101
                 89*****96337*********************************9985...9********************************************** PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB..-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  98 eeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvp..vagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                  +++++v++v l g++l+++av+p+m +q+sG+Iv +sSv ++ +   +g++ YsA+Ka+v gl+r++a+el p+++rvn+++PGl++Td+++ 
  CTQ27205.1 102 RANYDAVLDVSLRGTLLMSQAVIPTMRAQKSGSIVCISSVSAQRGggIFGGPHYSAAKAGVLGLARAMARELGPDNVRVNCITPGLIQTDITAG 195
                 ******************************************875226899***************************************9976 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   3.4   6.9e-12   3.1e-08       4     164 ..       9     170 ..       7     182 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 6.9e-12
                 EEETTTS..HHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   4 litGGlG..gLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 +itG++   gLG ++a+  ae+ga+ +++        e+sk+     +alg     +aa v+d+ +v+a++e+i a+ +++   ++ Ag+++  +l++ 
  CTQ27205.1   9 IITGAASarGLGFATAKLFAENGAKVVIIDLNG----EASKTA---AAALGEGHLGLAANVADEVQVQAAIEQILAKYGRVDVLVNNAGITQPLKLMDI 100
                 7999864339**************988775444....333323...3455556667899**************************************** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH..--TT-HHHHHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagll..gsagqanYaaaNaflDalaeyrr 164
                 + +++++vl   ++G+  + +++ +    ++   +v++SS+++    g +g  +Y+aa a + +la+  +
  CTQ27205.1 101 KRANYDAVLDVSLRGTLLMSQAVIPtmraQKSGSIVCISSVSAQRggGIFGGPHYSAAKAGVLGLARAMA 170
                 *********************987767779999*********9762257899999999988877777655 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.3   9.6e-06     0.043      10      69 ..      19      77 ..       7     123 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.6e-06
                CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEE CS
     3HCDH_N 10 mGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisf 69
                +G   a++fa++g +Vv++d + ea ++a++++ +    l++ + ++e +v+aa+++i +
  CTQ27205.1 19 LGFATAKLFAENGAKVVIIDLNGEASKTAAAALGEGHLGLAA-NVADEVQVQAAIEQILA 77
                577899**************************9995555533.33355566666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1962.28
//
Query:       CTQ27206.1  [L=281]
Description: putative uncharacterized transketolase family protein y4mO [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-41  141.0   0.1    7.3e-41  140.2   0.1    1.3  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
      7e-05   21.9   0.0    8.4e-05   21.7   0.0    1.1  1  E1_dh            Dehydrogenase E1 component
    0.00094   18.5   0.2       0.14   11.3   0.2    2.4  3  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
  ------ inclusion threshold ------
      0.086   12.8   0.1       0.39   10.7   0.0    2.0  2  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2   0.1   1.6e-44   7.3e-41       8     270 ..      15     267 ..       7     277 .. 0.91

  Alignments for each domain:
  == domain 1  score: 140.2 bits;  conditional E-value: 1.6e-44
                      HHHHHHHHHHHHHT-S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-SS-SS--T CS
  Transketolase_N   8 aiRvLavDavekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrqlgsktpGhPel 101
                       iR  a+ + e  + G+ G +lg ad+  + f++ +++ P+dp+w +RDRf+Ls Gh ++  Y+ l   G  ++ ++l+ +   +s+ p     
       CTQ27206.1  15 RIRRYALQMGEVQGQGYIGQALGYADVLATAFSHAMTYRPEDPEWEGRDRFLLSHGHYAIAYYAALLEAGI-IPEAELETYGSDDSRLPMSGMA 107
                      577788888888899*************************************************9988887.77799***************** PP

                      TTSTT--S---STTHHHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTEEGGG.T CS
  Transketolase_N 102 ghtagvevttGPLGqGianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidGetei.s 194
                      ++t+g+e+  G LGqG++ avg+al  ++  +            ++y  ++Dg l eG + ea+  a++ +L +Li l D nk   dG+  +  
       CTQ27206.1 108 TYTPGMEMSGGSLGQGLSIAVGMALGLRQKQS----------KAWVYNSMSDGELDEGSTWEAAMSAAHYGLSNLINLVDVNKQQADGDSRKiL 191
                      *************************9887654..........4689******************************************986505 PP

                      --S-HHHHHHHTT-EEEEETTTT-HHHHHHHHHHHHH.-TTS-EEEEEE--TTTTSTTTTTSGGGTSS---HHHHHH CS
  Transketolase_N 195 ftedvakrfeaygWhvievedgedveaikaaieeaka.ekdkPsliklrtviGygspakagtedvhGapLgedevaa 270
                        e  +++++a+gW v++  dg+d+ a+ aa ++ak+ + ++P +i + t++G g p  +   + h   + +de ++
       CTQ27206.1 192 GFEPLQDKWAAFGWYVQR-VDGNDLPAVMAAFDNAKSySGNQPRVILCDTLMGKGVPFLETRDKNHFIRVDADEWQK 267
                      6799************99.7999*************835689************************99999888765 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.9e-08   8.4e-05      99     220 ..     116     236 ..      60     267 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.9e-08
                 E-SSTTTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--E.EEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEEEETTS CS
       E1_dh  99 gngivgaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpv.ifvveNNkygisTeaekasaskeladrargvgipglrVdgnD 196
                   g +g   +++ G+al  ++++ k+ +   + Dg   +G  +ea+  aa ++l   i  v  Nk     +++k    + l d+ +++g    rVdgnD
  CTQ27206.1 116 SGGSLGQGLSIAVGMALGLRQKQSKAWVYNSMSDGELDEGSTWEAAMSAAHYGLSNlINLVDVNKQQADGDSRKILGFEPLQDKWAAFGWYVQRVDGND 214
                 4455666678999****************************************987799***9**9999****************************** PP

                 HHHHHHHHHHHHHHHHTTT--EEE CS
       E1_dh 197 plavyeAvkfAaeraregkgplli 220
                   av++A   A+ +  +  +p +i
  CTQ27206.1 215 LPAVMAAFDNAKSYSGN--QPRVI 236
                 *************9755..55555 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.85   3.8e+03      12      48 ..       3      40 ..       1      48 [. 0.74
   2 !   11.3   0.2   3.1e-05      0.14     115     172 ..     122     180 ..     113     193 .. 0.82
   3 !    4.7   0.0    0.0033        15     241     265 ..     206     230 ..     193     240 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.85
  DXP_synthase_N 12 klskeeleelaeelrefliesvsktg.gHlasnLgvve 48
                      +++++ + a  +r++ +++ + +g g ++ +Lg  +
      CTQ27206.1  3 MTESQKVAAAAWRIRRYALQMGEVQGqGYIGQALGYAD 40
                    55667778888889999998887776588888888765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3.1e-05
  DXP_synthase_N 115 tsisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigel.kkkllvilNdNe 172
                       +s+a+G+a   ++k++k  v   + Dg l  G ++ea  ++++   ++l+ ++  N+
      CTQ27206.1 122 QGLSIAVGMALGLRQKQSKAWVYNSMSDGELDEGSTWEAAMSAAHYgLSNLINLVDVNK 180
                     679***********************************977777662456665555555 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0033
  DXP_synthase_N 241 YlGpidGhdleelikvleevkklkg 265
                     Y+  +dG+dl +++ +++++k+++g
      CTQ27206.1 206 YVQRVDGNDLPAVMAAFDNAKSYSG 230
                     8899*****************9855 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.7e-05      0.39       6      53 ..       5      53 ..       3      58 .. 0.86
   2 ?   -1.5   0.0      0.57   2.6e+03      37      60 ..     121     144 ..     119     150 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.7e-05
                ETTT--EEEEEEE-TTSSEEEEEE-GGG.-SSSHHHHHHHHHHHHHHHS CS
        FR47  6 rkelgelaawilrkdggelgalqvlpeh.rrrGlgsrlvkalakeiaer 53
                +++++++aaw++r++  ++g +q +    +  G++ +l+ a ++++  r
  CTQ27206.1  5 ESQKVAAAAWRIRRYALQMGEVQGQGYIgQALGYADVLATAFSHAMTYR 53
                568899*****************998765889*********99988765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.57
                 SHHHHHHHHHHHHHHHS-S-EEEE CS
        FR47  37 Glgsrlvkalakeiaergktvllv 60 
                 G g +++  +a ++++++ ++ ++
  CTQ27206.1 121 GQGLSIAVGMALGLRQKQSKAWVY 144
                 556677777777888877777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2266.32
//
Query:       CTQ27207.1  [L=330]
Description: putative uncharacterized transketolase family protein y4mN [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-32  110.3   0.2    1.4e-31  109.5   0.2    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
    9.5e-28   96.6   0.1    1.6e-27   95.8   0.1    1.4  1  Transketolase_C  Transketolase, C-terminal domain
     0.0045   17.3   0.0     0.0086   16.4   0.0    1.4  1  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5   0.2   2.4e-35   1.4e-31       7     176 ..      27     186 ..      22     187 .. 0.95

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 2.4e-35
                   HHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHHHCHHHHH CS
  Transket_pyr   7 kaeaealaellkedpevvligaDvaggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqairsgeakg 103
                   + ++ al++l+++ pe+v+++aD+++ t ++++++ +++   r++++g++Eq ++++a G+a +g  ++++ ++++ Fa+    +a+++i +  a +
    CTQ27207.1  27 APFGVALSKLAAQRPEIVGMTADLSKYTDLHIFAQAFPD---RFFQMGMAEQLLMAAAGGIAKEG--FIPFATTYAAFAT---RRAYDFIHQVIAEE 115
                   567889*********************************...***********************..9************...************** PP

                   T--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr 104 klkvgvvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                   +l+v+++  lp  + + Gp+hq+ e++a++r ipg+ +v P+d+ e+++++ + +    ++Pv++rl +++++
    CTQ27207.1 116 HLNVKICAALPGLTTGYGPSHQATEDLAIMRGIPGMVIVDPCDALEIEQAVPAIAD--HQGPVYMRLLRGKVP 186
                   *****99999999*******************************************..557******998875 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.1   2.7e-31   1.6e-27       1     124 []     199     321 ..     199     321 .. 0.95

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 2.7e-31
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEE.EEEEEESTTSHHHHHHHHHHHCCCTTCS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlv.vveeavkrgGigsevaaalaeeafdgld 93 
                      gka++l +g+dv++++ G m  +aleAae+L++++i++ V+ ++t+kplD++ i e + k grlv + e+++  gG+g++vaa+l++   +g+ 
       CTQ27207.1 199 GKAKLLEDGNDVLIISSGLMTMRALEAAEKLRADNIGVAVLHVPTIKPLDEKAIIEQASKPGRLVvTAENHTAVGGLGEAVAALLMR---KGVR 289
                      89*****************************************************8888888776156778999*************...9*** PP

                      SEEEEEEE-SS.SSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  94 apvkrvggpdv.iepgsaeelekafgldaeki 124
                       +  +vg+pd+    g+ ++l++ +g++++ki
       CTQ27207.1 290 CELDSVGLPDAfLLAGALPTLHDRYGISTAKI 321
                      ****************************9998 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.4e-06    0.0086       2      81 ..     209     286 ..     208     295 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.4e-06
                 SEEEEE-STHHHHHHHHHHHHHHTT--EEEEEES--BS--HHHHHHHSTT-SEEEEEE-S--TT-G-HHHHHHHHHTGGG CS
     PFOR_II   2 evvivamGsvagtaksavdelReegikvGllrlrtlrPFPeeelkellkkvkkvvvldrnisfgseGqlveevkaalkks 81 
                 +v+i+  G +   a +a+++lR++ i v +l + t+ P  e+++ e+++k  ++vv   n++  + G l+e v+a l ++
  CTQ27207.1 209 DVLIISSGLMTMRALEAAEKLRADNIGVAVLHVPTIKPLDEKAIIEQASKPGRLVVTAENHT--AVGGLGEAVAALLMRK 286
                 899********************************************999999999999883..4488888888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2644.32
//
Query:       CTQ27208.1  [L=91]
Description: hypothetical protein CH1034_160196 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 701.80
//
Query:       CTQ27209.1  [L=451]
Description: RNA helicase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-50  170.2   0.0    8.9e-50  168.9   0.0    1.7  2  DEAD           DEAD/DEAH box helicase
    1.7e-26   92.7   0.0    6.3e-26   90.9   0.0    1.9  2  Helicase_C     Helicase conserved C-terminal domain
    3.5e-07   30.4   0.0    6.6e-07   29.5   0.0    1.5  1  ResIII         Type III restriction enzyme, res subunit
    0.00032   21.0   0.0        0.1   12.9   0.0    2.4  2  AAA_19         AAA domain
  ------ inclusion threshold ------
      0.023   13.5   0.0        1.7    7.3   0.0    3.1  3  UTP25          Utp25, U3 small nucleolar RNA-associated SSU p
       0.07   12.6   0.0          1    8.8   0.0    1.9  2  UvrD-helicase  UvrD/REP helicase N-terminal domain
       0.52   10.6   3.1        2.5    8.4   1.7    2.7  2  AAA_22         AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9   0.0   3.5e-53   8.9e-50       1     174 [.      25     195 ..      25     197 .. 0.97
   2 ?   -2.2   0.0       1.2     3e+03      66     104 ..     264     302 ..     228     306 .. 0.55

  Alignments for each domain:
  == domain 1  score: 168.9 bits;  conditional E-value: 3.5e-53
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS....TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet....kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld 95 
                 t+iQ++aip++l+g+d++++a+TG+GKT+ f +p+lq+++ +    kg++  +ali++PtreLa q+ +n++ + ky+++r l+++ggv+ + q+ kl+
  CTQ27209.1  25 TPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLILNephaKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR 123
                 89************************************998889999***************************************************9 PP

                 TTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  96 ngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                  gvdi+v+tpgrl+dl +++ ++l++v++lVlDEadr+ld+gf  +i+r+l++l       ++ rq +++SAT+++++k
  CTQ27209.1 124 GGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKL-------PARRQNLLFSATFSDEIK 195
                 99*************99999**********************************.......567889*******98876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
                 HHHHHTTTSTSEEEEEETTSSHHHHHHHH...HTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxx RF
        DEAD  66 nlkkfkkyidlrvlliiggvaardqlskl...dng.vdivvgt 104
                 +l    ++ ++r  +i g++++    ++l   ++g ++++v+t
  CTQ27209.1 264 QL----NKDGIRSAAIHGNKSQGARTRALadfKSGgIRVLVAT 302
                 22....2223455666665555555555532233346666665 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.3   5.9e+03      18      53 ..      77     116 ..      63     132 .. 0.54
   2 !   90.9   0.0   2.5e-29   6.3e-26       4     110 ..     234     339 ..     231     340 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.3
                 EEEEEESSHHHHHH........HHHHHHHTTSTEEEESTTSTHH CS
  Helicase_C  18 kilifvntidrlek........vklllekkgikvavlhgelpqn 53 
                 ++li ++t++ + +         k+l    +i+++v+ g  + n
  CTQ27209.1  77 RALILTPTRELAAQvgenvrdySKYL----NIRSLVVFGGVSIN 116
                 66777777773333333421122222....66666666655544 PP

  == domain 2  score: 90.9 bits;  conditional E-value: 2.5e-29
                 HHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHH CS
  Helicase_C   4 eallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyi 101
                 e l +l+  e + +++l+f++t+  +++ ++ l +k gi++a++hg+ +q  r ++l++f++g ++vL+atd+a+rG+di+++ +V+n++lp  +++y+
  CTQ27209.1 234 ELLSQLI-GEGNWQQVLVFTRTKHGANHlAEQL-NKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYV 330
                 5566666.888999**********886544555.666************************************************************** PP

                 HHHTTSSST CS
  Helicase_C 102 qriGRtgRa 110
                 +riGRtgRa
  CTQ27209.1 331 HRIGRTGRA 339
                 ********8 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   2.6e-10   6.6e-07       3     170 ..      23     191 ..      21     192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 2.6e-10
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S...........-EEEEESSHHHHHHHHHHGGGGTGG..........GEEE CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee......kflflvprkslleqtleefkkflseayke......igkk 88 
                 e+ + Q++ai ++l+ +       ++  + TGtGKT    + l +rl  +++        ++l+l p+++l  q  e+++++++  +         g +
  CTQ27209.1  23 EPTPIQQQAIPAVLQGR------DLMASAQTGTGKTAGFtLPLLQRLILNEPHAkgrrpvRALILTPTRELAAQVGENVRDYSKYLN-IrslvvfGGVS 114
                 67899********9655......69***********87767777777776655569********************99999987544.33444433333 PP

                 ESSS-B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS-S CS
      ResIII  89 vsgdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTATpe 170
                 ++ +  k     +   +ilv+t  +l   +     +++  + d+ ++++ DEa r+ ++   + +r++l k+++    l ++AT+ 
  CTQ27209.1 115 INPQMMK----LRGGVDILVATPGRLLDLE-----HQNAVSLDKVEILVLDEADRMLDMgfiHDIRRVLAKLPArRQNLLFSATFS 191
                 4444444....599************9999.....99*********************9777799999999977467799****86 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.9e-05       0.1       1     115 [.      28     163 ..      28     186 .. 0.61
   2 !    5.9   0.0    0.0059        15      36      78 ..     241     309 ..     219     373 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.9e-05
      AAA_19   1 qreave.alkekvllvtaGpGtGKTr.....vlkhivallvelggvkpeeillvaftgrAakelrerlaalgae..atTiHrlal...........ldf 80 
                 q++a+   l+ + l+  a  GtGKT      +l+  +    +++g+ p + l++++t+  a ++ e+++ + +   ++ +  ++               
  CTQ27209.1  28 QQQAIPaVLQGRDLMASAQTGTGKTAgftlpLLQRLILNEPHAKGRRPVRALILTPTRELAAQVGENVRDYSKYlnIRSLVVFGGvsinpqmmklrG-- 124
                 78888669999999***********743222333444444455667789******************987765544333333333333333333332.. PP

      AAA_19  81 ddlltealelle..............eaeeekklqeeellivDEfq.dvd 115
                                           e+++   l + e+l+ DE+  ++d
  CTQ27209.1 125 -----------GvdilvatpgrlldlEHQNAVSLDKVEILVLDEADrMLD 163
                 ...........033444444444446666666775555888888752455 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0059
      AAA_19  36 elggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal............................l 78 
                  +g  + +++l+ + t++ a+ l+e+l++ g +   iH+                               l
  CTQ27209.1 241 GEG--NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSqgartraladfksggirvlvatdiaargL 309
                 333..449*******************98888888888653345555555555556655555555555551 PP

>> UTP25  Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.21   5.4e+02      72      95 ..      72      95 ..      65     103 .. 0.78
   2 ?    1.3   0.2     0.046   1.2e+02     245     269 ..     180     204 ..     139     233 .. 0.70
   3 ?    7.3   0.0   0.00066       1.7     319     418 ..     235     331 ..     214     351 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.21
       UTP25 72 gftrpkvLillptreaalevvell 95
                g    + Lil ptre a +v e++
  CTQ27209.1 72 GRRPVRALILTPTRELAAQVGENV 95
                5566789**********9987766 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.046
       UTP25 245 lRQtlvfssyetpeinslfnskleN 269
                  RQ+l+fs+  + ei+ l ++ l+N
  CTQ27209.1 180 RRQNLLFSATFSDEIKGLAEKLLHN 204
                 4777777777777777777777777 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.00066
       UTP25 319 ilpqlkkssskssgiliyipsyfdfvrvrnylkeekvsfaaiseysskkevsraRelFfkgkkkvlLyteRlhffrRykikgvkkvilYklPenpefys 417
                 +l+ql   + + +++l++  +     ++ + l+++ +  aai+  +s+   +ra   F++g  +vl+ t+ +   r  +i++  +v+ Y+lP+ pe y 
  CTQ27209.1 235 LLSQLIG-EGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAA--RGLDIEELPHVVNYELPNVPEDYV 330
                 5556655.67778888888888888899999999************************************885..99******************9876 PP

       UTP25 418 e 418
                  
  CTQ27209.1 331 H 331
                 5 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0004         1       2      68 ..      25     138 ..      24     240 .. 0.64
   2 ?    1.6   0.0     0.062   1.6e+02      39      68 ..     241     268 ..     233     294 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0004
                    SHHHHHHHHS..-SSEEEEEE-TTSSHHH.....HHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH....................... CS
  UvrD-helicase   2 npeqreaias..lggpilveAsAGsGKTf.....vlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee....................... 67 
                    +p+q++ai     g +++ +A  G+GKT+      l  +il+  ++++  p r l++T T+  a+   e ++                        
     CTQ27209.1  25 TPIQQQAIPAvlQGRDLMASAQTGTGKTAgftlpLLQRLILNEPHAKGRRPVRALILTPTRELAAQVGENVRDyskylnirslvvfggvsinpqmm 120
                    57788888874456667777777*****844433455666777777778888899***99999999999998866666666665555555555555 PP

                    .................H CS
  UvrD-helicase  68 .................a 68 
                                     +
     CTQ27209.1 121 klrggvdilvatpgrllD 138
                    555555555555555444 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.062
                    HTSSSTGGGEEEEESSHHHHHHHHHHHHHH CS
  UvrD-helicase  39 keeeiepdrilvvTFTnkAaeElkeRieea 68 
                     e+  + +++lv+T T+  a+ l e ++++
     CTQ27209.1 241 GEG--NWQQVLVFTRTKHGANHLAEQLNKD 268
                    444..7899****************99993 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.7   0.00099       2.5      74     115 ..     132     173 ..      41     190 .. 0.66
   2 ?   -2.0   0.0       1.6     4e+03      75     103 ..     326     357 ..     276     368 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00099
      AAA_22  74 sseellealeqalraravielliiDEaqh.lrseealeeLrsl 115
                 +  +ll++ +q++ + +++e+l++DEa++ l  +  + ++r+ 
  CTQ27209.1 132 TPGRLLDLEHQNAVSLDKVEILVLDEADRmL-DMGFIHDIRRV 173
                 5566776677777777779**********66.77777777554 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
      AAA_22  75 seellealeqalrarav...ielliiDEaqhl 103
                  e++++++ +  ra+a+    +l+ +DE   l
  CTQ27209.1 326 PEDYVHRIGRTGRAAATgeaLSLVCVDEHKLL 357
                 45555666666666666666678888886666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3162.05
//
Query:       CTQ27210.1  [L=718]
Description: ATP-dependent DNA helicase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-25   90.0   0.0    3.4e-25   89.2   0.0    1.4  1  Helicase_C_2  Helicase C-terminal domain
    5.8e-08   32.6   0.0      1e-07   31.7   0.0    1.3  1  DEAD_2        DEAD_2
    1.5e-07   31.4   0.1    1.8e-05   24.6   0.0    3.2  4  DEAD          DEAD/DEAH box helicase
    5.6e-07   29.7   0.0      8e-06   26.0   0.0    2.2  1  ResIII        Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.088   13.1   0.5        9.1    6.6   0.0    3.2  3  AAA_22        AAA domain


Domain annotation for each model (and alignments):
>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   9.5e-29   3.4e-25       7     169 ..     532     688 ..     527     690 .. 0.94

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 9.5e-29
  Helicase_C_2   7 vvpggvlvffpSyklleevverlkeeleskkieifveekeesrekvleeykek..kkkgaillavcrGklsEGidfsddllraviivglPfpnpkdp 101
                   +++ g+lv+f S + ++++ e++ +     ++ ++v+ +++ r +++e ++++  ++++++l+++   ++ EG+d+++dll+ v i ++ fp++++p
    CTQ27210.1 532 KKHLGMLVLFASGRAMNRFLEHVTDL----RLMLLVQ-GDQPRYRLVELHRKRveSGERSVLVGLQ--SFAEGLDLKGDLLSQVHIHKIAFPPIDSP 621
                   56679*****************9986....5689999.9************95569**********..***************************** PP

  Helicase_C_2 102 eveakreyldekgkknsgkewylpealravnQaiGRliRhkdDygaivllDeRfakeeireklpkwlr 169
                    v +  e+l++ ++  +++   lp a  ++ Q +GRliR+++ +g +v+ D+R+ +++++++l+++l+
    CTQ27210.1 622 VVITEGEWLKSLNR-YPFEVQSLPSASFNLIQQVGRLIRSHNCWGEVVIYDKRLLTKNYGARLLNALP 688
                   **************.************************************************99986 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   2.9e-11     1e-07     102     170 ..     197     264 ..     173     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 2.9e-11
                 HHHHHCT--HHHHHHHHHCCTSEEEEEHHHHTSCCCHHHHHT..GCGCEEEECTCCCHHHHHHHCC-EE CS
      DEAD_2 102 elgeklklCPYylsrelledadiiilpYqyLldekireslkgislknsivilDEAhNiedvceeaasve 170
                 + ++  + CP++++r+ +++a+++++ +++++ +   e++   + kn  ++lDE+h + dv+++a+ ++
  CTQ27210.1 197 RNCHYYRECPFFVARREIQEAEVVVANHALVMAAMESEAVL-PEPKNLLLVLDEGHHLPDVARDALEMS 264
                 55677789**********************99999999996.89*******************997654 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0     5e-09   1.8e-05       4      65 ..      31      94 ..      28     117 .. 0.76
   2 ?    2.7   0.0     0.027        97      94     138 ..     214     257 ..     206     270 .. 0.71
   3 ?   -2.4   0.0      0.96   3.4e+03     161     170 ..     454     463 ..     433     470 .. 0.64
   4 ?   -2.7   0.0       1.2   4.2e+03      68      95 ..     548     576 ..     545     590 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 5e-09
                HHHHHHHHH......TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHH CS
                xxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  4 Qaeaiplil......gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtln 65
                Q+++i  +       +g+++ ++a+TG GKTl +lip ++i     +++++  ++ +   +L  q+++
  CTQ27210.1 31 QRQMIADVAktlageEGRHLAIEAPTGVGKTLSYLIPGIAIA----REEQKTLVVSTANVALQDQIYS 94
                677777666666677889*********************888....3444445555556677777776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.027
                 HHTTCSEEEEEHHHHHHHHHCTS.SHCTTEEEEEEETHHHHHHTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  94 ldngvdivvgtpgrlddllstgk.lnlsqvrflVlDEadrlldqgf 138
                 + +++++vv+++  ++  ++++  l   +  +lVlDE + l d   
  CTQ27210.1 214 I-QEAEVVVANHALVMAAMESEAvLPEPKNLLLVLDEGHHLPDV-A 257
                 4.668899999998888775444144444458*******99886.4 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.96
                 EEEEEESSBS CS
                 xxxxxxxxxx RF
        DEAD 161 qvivlSATlp 170
                 +++v SATl 
  CTQ27210.1 454 HIVVTSATLR 463
                 3888888885 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 1.2
                 HHHTTT.STSEEEEEETTSSHHHHHHHHH CS
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  68 kkfkky.idlrvlliiggvaardqlskld 95 
                 ++f+++ +dlr++l+++g++ r  l +l+
  CTQ27210.1 548 NRFLEHvTDLRLMLLVQGDQPRYRLVELH 576
                 6677776889***9999999999888884 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   2.2e-09     8e-06       3     146 ..      26     255 ..      24     278 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.2e-09
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEE.SSHHHHHHHH.HHG......................... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflv.prkslleqtl.eef......................... 74 
                  +r+ Q ++i +++++l  ++ +++ i+++TG+GKTl ++    ++++  +e+k+l++   + +l +q + +++                         
  CTQ27210.1  26 IPRPPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAR--EEQKTLVVStANVALQDQIYsKDLpllrkiipdlrftaafgrgryvcpr 122
                 589***************99999**************99544444444..3457777751455888888854447788888999999999999999999 PP

                 ..........................................GGGTGG....GEEEESSS-B--................................... CS
      ResIII  75 ..........................................kkflseaykeigkkvsgdkkka................................... 96 
                                                           +                                                        
  CTQ27210.1 123 nltalastepsqqdllafldddltpnnqaeqklcatlkqdldS--------------------Yrwdglrdhtdkaiddglwsrlstdkasclnrnchy 201
                 9999999999999998888855554444444433333333330....................133333333344455555555555557777777888 PP

                 ...............-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS CS
      ResIII  97 ........kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlga 146
                          ++++++++++v++   + a++    e +  l + ++++++ DE H+l +
  CTQ27210.1 202 yrecpffvARREIQEAEVVVANHALVMAAM----ESEAVLPEPKNLLLVLDEGHHLPD 255
                 888888889999999999999999999999....6677777778889999*****987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0025       9.1       4      22 ..      46      64 ..      43      66 .. 0.89
   2 ?   -2.2   0.0       1.3   4.5e+03      49      89 ..     130     166 ..      77     168 .. 0.63
   3 ?    2.7   0.0     0.039   1.4e+02      92     109 ..     242     261 ..     220     275 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0025
      AAA_22  4 tagilvvtGesGtGKTtll 22
                + ++l++ +++G+GKT+++
  CTQ27210.1 46 EGRHLAIEAPTGVGKTLSY 64
                5789************986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
      AAA_22  49 sstsskdllrellralglelkaerlsseellealeqalrar 89 
                  + s++dl    l +l+++l  +++ ++ l ++l q l+++
  CTQ27210.1 130 TEPSQQDL----LAFLDDDLTPNNQAEQKLCATLKQDLDSY 166
                 22344444....44444444444456777777777777665 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.039
      AAA_22  92 ielliiDEaqhlrs...eeal 109
                   ll++DE +hl +    +al
  CTQ27210.1 242 NLLLVLDEGHHL-PdvaRDAL 261
                 589*********.54444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 4992.72
//
Query:       CTQ27211.1  [L=322]
Description: putative transferase/phosphorylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-10   38.1   0.1    1.7e-09   37.3   0.1    1.4  1  Glycos_trans_3N  Glycosyl transferase family, helical bundle 


Domain annotation for each model (and alignments):
>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   9.7e-14   1.7e-09       2      62 ..       5      69 ..       4      70 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 9.7e-14
                     HHHHHHHTT.....---HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHH CS
  Glycos_trans_3N  2 diikklrdg....eeLtaeeirfaihgilkgevtdaqiaAfLmAlrlkGetaeEiaalaeAmres 62
                     +iik + +g     +L++e +r++   +l+gev++ +++  L+Alr+kGe ++E+ ++  Am ++
       CTQ27211.1  5 KIIKEVGRGknhaRDLDEETARALYARMLNGEVPELELGGILIALRIKGEGEAEMKGFYAAMQQH 69
                     68999999987655************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2443.82
//
Query:       CTQ27212.1  [L=86]
Description: hypothetical protein CH1034_160200 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-17   62.0   1.3    6.5e-17   61.2   1.3    1.4  1  DUF1471   Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   1.3   3.6e-21   6.5e-17       1      56 []      34      86 .]      34      86 .] 0.98

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 3.6e-21
                EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEEEE CS
     DUF1471  1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAelYK 56
                +++ig++s++ ++++++ le++l++kA+++GA  Y Itsa++  +++l++tA++YK
  CTQ27212.1 34 MNKIGVVSAQ-GATTLDGLEAKLAAKAEAAGATGYSITSANT--NNKLSGTAVIYK 86
                78********.*******************************..***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 727.67
//
Query:       CTQ27213.1  [L=88]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-15   56.0   4.1    4.2e-15   55.4   4.1    1.3  1  zf-dskA_traR   Prokaryotic dksA/traR C4-type zinc finger
    2.6e-05   24.2   0.8    3.7e-05   23.7   0.8    1.2  1  DZR            Double zinc ribbon
     0.0077   15.9   2.4        0.1   12.4   0.3    2.3  2  zinc_ribbon_2  zinc-ribbon domain
  ------ inclusion threshold ------
      0.012   15.2   0.2      0.012   15.2   0.2    1.9  2  zf_UBZ         Ubiquitin-Binding Zinc Finger
      0.017   15.0   0.5      0.027   14.3   0.5    1.4  1  C1_1           Phorbol esters/diacylglycerol binding domain (
      0.037   14.2   1.4      0.058   13.6   1.4    1.3  1  Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (
      0.063   13.7   0.0      0.077   13.4   0.0    1.1  1  DUF3811        YjbD family (DUF3811)
      0.069   13.1   2.7       0.29   11.1   0.1    2.6  3  Nudix_N_2      Nudix N-terminal
       0.17   11.3   2.2       0.57    9.7   0.1    2.2  2  zf-ribbon_3    zinc-ribbon domain


Domain annotation for each model (and alignments):
>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   4.1   2.1e-18   4.2e-15       5      34 ..      37      67 ..      31      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 2.1e-18
  zf-dskA_traR  5 s.CeeCGEpIpeaRlralPgarlCveCqeka 34
                  + C+eCGEpIpeaR++a+Pg+r+Cv Cq++ 
    CTQ27213.1 37 KfCDECGEPIPEARRQAIPGVRYCVKCQQEK 67
                  26***************************86 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.8   1.8e-08   3.7e-05      10      42 ..      34      71 ..      28      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.8e-08
         DZR 10 pdarfCseCgtklkavaa.....edrCpsCgekvdpea 42
                ++++fC+eCg++++++ +      + C++C+++ d+  
  CTQ27213.1 34 ESNKFCDECGEPIPEARRqaipgVRYCVKCQQEKDLHN 71
                5789*********977769***9********9977765 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.3   5.1e-05       0.1      11      23 .]      34      46 ..      32      46 .. 0.88
   2 ?    3.4   0.1     0.033        66      13      19 ..      57      63 ..      54      74 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.1e-05
  zinc_ribbon_2 11 dnakFCpyCGtpl 23
                   + +kFC +CG+p+
     CTQ27213.1 34 ESNKFCDECGEPI 46
                   579********95 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.033
  zinc_ribbon_2 13 akFCpyC 19
                   +++C +C
     CTQ27213.1 57 VRYCVKC 63
                   5666666 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.2   6.1e-06     0.012       2      18 ..      36      52 ..      35      53 .. 0.86
   2 ?   -0.9   0.3      0.63   1.3e+03       5      11 ..      60      66 ..      58      70 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.1e-06
      zf_UBZ  2 tylCerCgkeipeselq 18
                + +C++Cg++ipe+ +q
  CTQ27213.1 36 NKFCDECGEPIPEARRQ 52
                679*********99776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.63
      zf_UBZ  5 CerCgke 11
                C +C++e
  CTQ27213.1 60 CVKCQQE 66
                8899885 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.5   1.4e-05     0.027      10      36 ..      35      65 ..      27      72 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
                S--B-TTT-SB-...-SSSS-EEE.ETTT-- CS
        C1_1 10 qptfCkhCgefl...wgkekqglk.CswCkl 36
                + +fC++Cge++   ++++++g++ C  C++
  CTQ27213.1 35 SNKFCDECGEPIpeaRRQAIPGVRyCVKCQQ 65
                679*********8854477777755999986 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.4   2.9e-05     0.058      15      40 .]      36      64 ..      35      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.9e-05
  Auto_anti-p27 15 aetCpvCgvPLmrdr...kggkvyCvaCd 40
                   ++ C++Cg P+ + r     g  yCv C+
     CTQ27213.1 36 NKFCDECGEPIPEARrqaIPGVRYCVKCQ 64
                   677****9999999986636788*****6 PP

>> DUF3811  YjbD family (DUF3811)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.9e-05     0.077      14      77 ..      12      75 ..       9      83 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.9e-05
     DUF3811 14 qrevktlLdrarkklgreLtNaEqNrikdeaidkimaereaaakkaraekkkekakpdssetfs 77
                q ++   +d a ++  r+L  +E+N+  de  + i ++r +a+  +r   k ++ k  +++tfs
  CTQ27213.1 12 QDQIDSTIDDAVARARRKLPRGESNKFCDECGEPIPEARRQAIPGVRYCVKCQQEKDLHNNTFS 75
                678889999999***********************************98888888877999997 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4   2.9e+03      10      19 ..      26      35 ..      24      36 .. 0.76
   2 ?   11.1   0.1   0.00015      0.29       1      10 [.      37      46 ..      37      55 .. 0.82
   3 ?    1.4   0.2      0.16   3.1e+02       1       7 [.      58      64 ..      58      70 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
                -EEE--TT-S CS
   Nudix_N_2 10 velripdgDn 19
                 ++++p g++
  CTQ27213.1 26 ARRKLPRGES 35
                5789999985 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00015
                -B-TTT--B- CS
   Nudix_N_2  1 kFCsqCGtpv 10
                kFC +CG+p+
  CTQ27213.1 37 KFCDECGEPI 46
                9*******96 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.16
                -B-TTT- CS
   Nudix_N_2  1 kFCsqCG 7 
                ++C +C 
  CTQ27213.1 58 RYCVKCQ 64
                7999995 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00029      0.57       2      12 ..      36      46 ..      34      50 .. 0.66
   2 ?    1.1   0.2      0.14   2.8e+02       3       8 ..      58      63 ..      55      67 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00029
  zf-ribbon_3  2 tvrCPnCGapl 12
                  ++C +CG+p+
   CTQ27213.1 36 NKFCDECGEPI 46
                 46777777753 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.14
  zf-ribbon_3  3 vrCPnC 8 
                 ++C +C
   CTQ27213.1 58 RYCVKC 63
                 577777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 755.41
//
Query:       CTQ27214.1  [L=86]
Description: hypothetical protein CH1034_160202 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-13   49.9   0.2    3.3e-13   49.4   0.2    1.3  1  DUF1471   Protein of unknown function (DUF1471)
  ------ inclusion threshold ------
        5.2    7.2   6.9        7.9    6.6   2.0    2.1  2  DUF5437   Family of unknown function (DUF5437)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.2   3.7e-17   3.3e-13       1      56 []      34      86 .]      34      86 .] 0.97

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 3.7e-17
                EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEEEE CS
     DUF1471  1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAelYK 56
                l p+gt+s+  ++++++dl++al+ kA + GA ++rI +a+   g+ l+++A++Y+
  CTQ27214.1 34 LRPVGTVSAF-GASTLDDLAAALADKAHRHGAIAWRINAASS--GNRLYGSAIIYQ 86
                689*******.*******************************..***********5 PP

>> DUF5437  Family of unknown function (DUF5437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.0   0.00088       7.9       1      28 [.       1      26 [.       1      30 [. 0.81
   2 ?    3.4   0.2    0.0086        77      21      42 ..      48      69 ..      39      75 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00088
     DUF5437  1 mkllliLvallsaalArkaLpDpLApPp 28
                mk++++L+a + +a A  a   pL pPp
  CTQ27214.1  1 MKFVSLLFAAALTAHATAA--SPLPPPP 26
                9*******98888888776..5777877 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0086
     DUF5437 21 pDpLApPpkhagHlaGAPklra 42
                +D LA+  +   H  GA + r+
  CTQ27214.1 48 LDDLAAALADKAHRHGAIAWRI 69
                4667777777778888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 664.99
//
Query:       CTQ27215.1  [L=204]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-17   62.3   0.0    6.8e-17   61.9   0.0    1.0  1  Flavin_Reduct  Flavin reductase like domain
  ------ inclusion threshold ------
      0.043   14.2   0.0      0.078   13.3   0.0    1.3  1  MKT1_N         Temperature dependent protein affecting M2 dsR


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   7.6e-21   6.8e-17       5     142 ..      23     167 ..      22     178 .. 0.92

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 7.6e-21
                    -EE-EEEEE.EETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCCCCEEECT.CCC CS
  Flavin_Reduct   5 aqpvavvttsvpptsplgatlssftslsldPplvafslrlpsstadalkeagefvinllsesqealadafsqksgprtddksifagltwees.ptg 99 
                    ++p+ ++ +++++++++ a++s+f      Pp+++f+   ++++ +++ e++efv nl  +  + +++++s+  +   +d++  aglt   s  + 
     CTQ27215.1  23 PRPIGWIASQDAEGQRNLAPYSFFNCFNYRPPIIGFASSGWKDSVRNIVETKEFVWNLATRPLAMAMNETSASIP-HHEDEFVRAGLTAAASrLVS 117
                    789******999*************************************************99*********887.9*************998899 PP

                    SEEETTCSEEEEEEEEEEECCTT.......EEEEEEEEEEEEESTTECTT CS
  Flavin_Reduct 100 apallgalasleCqvvgsvelgd.......helfigeVvavkvgddadee 142
                    ap+++++++++eC++ + ++l +         l++geVvav+++++  ++
     CTQ27215.1 118 APRVAESPVNFECRLSQCIQLTTadgnpvdTWLVLGEVVAVHIDESLLDN 167
                    9****************9888766789999**************995544 PP

>> MKT1_N  Temperature dependent protein affecting M2 dsRNA replication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.7e-06     0.078      23      80 ..      19      90 ..      15      96 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.7e-06
      MKT1_N 23 Gligprilnalts...............gelieeppldggdseeYrklvtdllteireqalnLltqrlhrfyq 80
                ++igpr +++++s                +++ +pp+ g +s+ +++ v+++  e +e + nL t +l+ +++
  CTQ27215.1 19 AIIGPRPIGWIASqdaegqrnlapysffNCFNYRPPIIGFASSGWKDSVRNIV-ETKEFVWNLATRPLAMAMN 90
                78**************************************************9.*************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1607.29
//
Query:       CTQ27216.1  [L=304]
Description: putative AdoMet-dependent methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-142  474.0   0.0   2.1e-142  473.8   0.0    1.0  1  Methyltransf_10  RNA methyltransferase
    3.5e-05   23.4   0.0    8.5e-05   22.2   0.0    1.6  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.055   13.3   0.1       0.15   11.8   0.0    1.9  3  Methyltransf_23  Methyltransferase domain
      0.056   14.2   0.0       0.12   13.1   0.0    1.6  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_10  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  473.8   0.0  4.8e-146  2.1e-142       2     299 .]       3     296 ..       2     296 .. 0.99

  Alignments for each domain:
  == domain 1  score: 473.8 bits;  conditional E-value: 4.8e-146
                      XXXSSSXTTXTTTTSXXHHHHHHHXHHHHTTXEEXTTSXEES-TTSHHHHHHHHHHHHHHHH----.---TTS----HHHHHHHHHHHHHHHTG CS
  Methyltransf_10   2 alksglhprnrhkdkydfaalikvvPelkqfvilnpkGrvsidfadPlavkalnkallrefygvsewdiPdgfliPpvPgradyihyvadllgk 95 
                      a+k+glhprnrh+++yd++al++ +P+l+ +++lnp G+++idfa+P+avkalnkall++fy+v++wdiPdgfl+PpvPgradyih++adll+ 
       CTQ27216.1   3 AQKPGLHPRNRHHQRYDLPALCQAHPDLQGYITLNPLGEQTIDFANPQAVKALNKALLAHFYAVKHWDIPDGFLCPPVPGRADYIHHLADLLAG 96 
                      799******************************************************************************************* PP

                      GGSGTTS--EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT.T-TTTEEEEE--TT-SCCHHSSTTSS-EEEEEE-S---S CS
  Methyltransf_10  96 adsdisaqvraldiGvGanCiyPllGvteyGWrfvgsevddvslasakaivesnsklsdaiklrkqkekkaifdglieenerydvtlCnPPfha 189
                      +++++++++ +ldiG+Gan iyPl+G++eyGWrf+gse++++++asa+ai++ n+ l+++i+lr+qke++aif+g+i++ne yd+tlCnPPfh+
       CTQ27216.1  97 DSGEVPKDATILDIGTGANLIYPLIGAHEYGWRFTGSEINPQAFASAQAIINGNPGLTRQIRLRRQKESQAIFHGVIHKNETYDATLCNPPFHD 190
                      ********************************************************************************************** PP

                      S------------...---.....---------TTTSHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHHHHHHHTT-SEEEEEEE CS
  Methyltransf_10 190 slaeakagserklknlgkanktralpslnfgGqkaelyceGGevafikklieeskqlakqvlWfttlvskkenlaplkeelkklGaskvtvvel 283
                      s++ a+ag erk++nlg      a++ lnfgGq++el+ceGGevafi+++i+es+++a+qv Wft+lvs+++nl+pl++ l+++Ga+kv+++e+
       CTQ27216.1 191 SAESARAGGERKRRNLGLG----AESGLNFGGQQQELWCEGGEVAFISQMIRESQAFARQVKWFTSLVSRGDNLPPLYRLLTEVGAVKVVKKEM 280
                      ****************996....7889******************************************************************* PP

                      EETTEEEEEEEEES-- CS
  Methyltransf_10 284 aqGqklsrfiaWsfld 299
                      aqGqk+srf+aWsf+d
       CTQ27216.1 281 AQGQKQSRFLAWSFMD 296
                      **************97 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.9e-08   8.5e-05      31     114 ..     103     195 ..      89     219 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.9e-08
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-S....TTTTS..TTS-EEEEEE---STTTCHCH CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle...vevvasd....vleev..eekkfdlivsNPPfhagkate 114
                 ++ ++lD+G+Ga ++   + +++   + t  +++ +A +sa++ ++ n      ++++ +     +++ v  +++ +d+ ++NPPfh++ +  
  CTQ27216.1 103 KDATILDIGTGANLIYPLIGAHEYGWRFTGSEINPQAFASAQAIINGNPGLtrqIRLRRQKesqaIFHGVihKNETYDATLCNPPFHDSAESA 195
                 5678***************************************999986544564444433001133433324789***********998754 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.1   5.1e+03     136     153 ..       8      25 ..       4      27 .. 0.82
   2 ?   11.8   0.0   3.4e-05      0.15      21      62 ..     102     163 ..      83     236 .. 0.75
   3 ?   -3.0   0.0       1.3   5.7e+03     125     143 ..     284     302 ..     267     304 .] 0.76

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.1
  Methyltransf_23 136 lvpagrhisffsarslke 153
                      l p++rh + ++  +l++
       CTQ27216.1   8 LHPRNRHHQRYDLPALCQ 25 
                      678899*99999999987 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.4e-05
  Methyltransf_23  21 raggrvLdiGcGtGillevl..rengfsvtgvDlspeaveiae..................k 62 
                      ++++ +LdiG+G     +++   e+g+ +tg +++p+a + a+                  k
       CTQ27216.1 102 PKDATILDIGTGANLIYPLIgaHEYGWRFTGSEINPQAFASAQaiingnpgltrqirlrrqK 163
                      67889*********99999977888************9999885555555555544444442 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.3
  Methyltransf_23 125 kedrllldwlylvpagrhi 143
                      +  +++l w ++++a r +
       CTQ27216.1 284 QKQSRFLAWSFMDDAKRRR 302
                      4678899999998887665 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.7e-05      0.12       1      73 [.     108     185 ..     108     200 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.7e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg......ssfDlvvas 73 
                      L+iG+G   +   + ++  ++++tg++i+p+a++ a++ ++ + +  + +++l+ +  ++          +++D+ +++
       CTQ27216.1 108 LDIGTGANLIYPLIGAHEYGWRFTGSEINPQAFASAQAIINGNPG-LTRQIRLRRQKESQAIFHgvihknETYDATLCN 185
                      89****999999999999***************777776666665.667888887775544333788888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2406.38
//
Query:       CTQ27217.1  [L=731]
Description: putative membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-42  145.1   0.8    4.7e-42  143.9   0.8    1.7  1  MS_channel       Mechanosensitive ion channel


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.9   0.8   2.6e-46   4.7e-42       2     205 ..     512     711 ..     511     712 .. 0.97

  Alignments for each domain:
  == domain 1  score: 143.9 bits;  conditional E-value: 2.6e-46
                 .HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEHHH CS
  MS_channel   2 kilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveigdieGtVediglrttkirtfdgrivtiPnss 100
                 ++l+++i +++++i ls++gvn++ lla++Galgla+++++++l++++++Gi++ fe+ ++ GDlv+ig ++GtVe +++r++ +r+ +g++++iP+ss
  CTQ27217.1 512 NALAVVISTITVMILLSEIGVNIAPLLAGAGALGLAISFGAQTLVKDIITGIFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSS 610
                 67899********************************************************************************************** PP

                 HHTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-T.TS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHHH CS
  MS_channel 101 lvtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlk.dkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikki 198
                 ++  +++N+ r  g  +++ +  v+ ++d +k++++l+   + l+ ++e+   +   + + + +g+s++ f++rv  +t +p +++ v+ ++  ++kk+
  CTQ27217.1 611 IT--TFANFVR--GIGSVVANYDVDRHEDLDKASQALKAAVDDLLAQEEIRGlIIGEPSFAGLVGLSNTAFTLRVSFTT-LPLKQWTVRFALDTQVKKH 704
                 **..*******..****************************99999999998788999*********************.9****************** PP

                 HHHHT-- CS
  MS_channel 199 leeegie 205
                 ++++g++
  CTQ27217.1 705 FDRAGVR 711
                 ****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       892  (0.0497518); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 5247.68
//
Query:       CTQ27218.1  [L=240]
Description: glutamine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-37  128.7   0.0    2.8e-37  128.3   0.0    1.2  1  ABC_tran         ABC transporter
    5.5e-11   42.8   0.0    1.1e-05   25.5   0.0    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    3.2e-09   36.6   0.2    4.1e-05   23.1   0.0    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
      5e-05   23.8   0.2    0.00011   22.7   0.2    1.7  1  AAA_16           AAA ATPase domain
    5.1e-05   22.9   0.0    9.5e-05   22.1   0.0    1.4  1  AAA_29           P-loop containing region of AAA domain
    0.00016   21.5   0.0       0.02   14.6   0.0    2.1  2  AAA_15           AAA ATPase domain
    0.00029   21.4   0.1    0.00055   20.5   0.1    1.4  1  AAA_23           AAA domain
    0.00057   18.8   0.1       0.46    9.2   0.1    2.3  2  ABC_ATPase       Predicted ATPase of the ABC class
    0.00072   19.5   0.1     0.0014   18.5   0.1    1.4  1  RsgA_GTPase      RsgA GTPase
    0.00093   19.0   0.4     0.0031   17.2   0.4    1.9  1  AAA_30           AAA domain
     0.0018   18.6   0.1     0.0041   17.4   0.1    1.9  1  AAA_22           AAA domain
     0.0049   15.7   0.0     0.0073   15.1   0.0    1.3  1  RNA12            RNA12 protein
     0.0055   17.2   0.0       0.01   16.4   0.0    1.5  1  AAA_18           AAA domain
     0.0056   16.3   0.5      0.095   12.3   0.0    2.3  2  CobU             Cobinamide kinase / cobinamide phosphate gua
     0.0064   16.4   0.0      0.011   15.7   0.0    1.4  1  Rad17            Rad17 P-loop domain
     0.0077   16.4   0.1      0.018   15.2   0.1    1.9  1  AAA_33           AAA domain
  ------ inclusion threshold ------
      0.012   14.3   0.0        1.5    7.4   0.0    2.0  2  AAA_13           AAA domain
      0.014   15.3   0.0      0.026   14.5   0.0    1.5  2  ATPase_2         ATPase domain predominantly from Archaea
      0.018   14.8   0.0       0.55    9.9   0.0    2.2  2  IstB_IS21        IstB-like ATP binding protein
      0.024   14.3   0.1      0.064   12.8   0.0    1.7  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.031   13.8   0.1       0.27   10.8   0.0    2.0  2  AAA_25           AAA domain
      0.034   14.4   0.2        0.6   10.4   0.1    2.4  1  SbcCD_C          Putative exonuclease SbcCD, C subunit
      0.042   13.4   0.0      0.085   12.4   0.0    1.5  1  AAA_27           AAA domain
      0.055   13.4   0.0       0.18   11.7   0.0    1.8  2  NACHT            NACHT domain
      0.064   13.2   0.1       0.24   11.3   0.0    1.8  2  NTPase_1         NTPase
      0.069   13.5   0.3        0.2   12.0   0.0    1.8  2  AAA_19           AAA domain
      0.073   12.8   0.2       0.14   11.9   0.0    1.6  2  AAA_24           AAA domain
      0.078   12.1   0.0       0.15   11.3   0.0    1.5  2  NB-ARC           NB-ARC domain
       0.11   12.2   0.0        0.3   10.8   0.0    1.7  2  Sigma54_activat  Sigma-54 interaction domain
       0.13   11.6   0.1        2.3    7.5   0.0    2.3  2  ATPase           KaiC
       0.14   12.0   0.0       0.27   11.1   0.0    1.5  1  CPT              Chloramphenicol phosphotransferase-like prot
       0.14   12.4   0.0       0.42   10.8   0.0    1.8  1  AAA_28           AAA domain
       0.15   12.1   0.0       0.49   10.4   0.0    1.8  2  AAA_14           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   0.0   5.2e-40   2.8e-37       1     137 []      17     165 ..      17     165 .. 0.95

  Alignments for each domain:
  == domain 1  score: 128.3 bits;  conditional E-value: 5.2e-40
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren..............esde 83 
                 l+++slk+++ge+v+i+G++G+GKSt+l+++ +l++ t+G++ +dg ++++   +++  r+e g+++q+  lfp+lt+ en              ++++
  CTQ27218.1  17 LHDISLKINQGEVVVIIGPSGSGKSTMLRCINKLEEITSGDLIVDGLKVNDpkVDERLIRQEAGMVFQQFYLFPHLTALENvmfgplrvrgaskqAAEK 115
                 789************************************************988999**********************************99888888 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++++l+k+gl e +++     ps+LSgGq+qrva+aral+ kpk++l+DEpt+
  CTQ27218.1 116 QAKELLAKVGLAERAHH----YPSELSGGQQQRVAIARALAVKPKMMLFDEPTS 165
                 89999999999994444....56*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.9e-05      0.01       1      22 [.      29      50 ..      29      84 .. 0.76
   2 !   25.5   0.0   1.9e-08   1.1e-05     234     297 ..     134     194 ..      91     198 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                + v+iGp gsGKS+ L+++  l
  CTQ27218.1 29 VVVIIGPSGSGKSTMLRCINKL 50
                579***************9655 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 1.9e-08
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 ++elS G+++  a++ al+  +   +  l+DEp + L+P+l +++l+++ +l+++g   +++TH
  CTQ27218.1 134 PSELSGGQQQRVAIARALAVKP---KMMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTH 194
                 4678999988867777777655...9***********************999999********9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00026      0.14      25      44 ..      28      47 ..      14      57 .. 0.85
   2 !   23.1   0.0   7.5e-08   4.1e-05     116     206 ..     110     204 ..      98     214 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00026
                SEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAi 44
                ++ +i+Gp GSGKs +l  i
  CTQ27218.1 28 EVVVIIGPSGSGKSTMLRCI 47
                5789***********99877 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 7.5e-08
                 EEE-HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-.S CS
                 xxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.x RF
       SMC_N 116 kevtkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemleka.d 206
                 k++ +k+ +ell+++g+ +       +LSgG+++ va+a  +A++   p+ ++l+De  +aLD + +++v ++++   ++ + +++++++ ++ ek+ +
  CTQ27218.1 110 KQAAEKQAKELLAKVGLAERahhypsELSGGQQQRVAIARALAVK---PK-MMLFDEPTSALDPELRHEVLKVMQDLAEEgMTMVIVTHEIGFAEKVaS 204
                 556667777777777776655555559*************99975...43.789*********************988876899999999888887634 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.2     2e-07   0.00011      20      52 ..      23      78 ..      14     210 .. 0.51

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2e-07
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellralekd........................g 52
                + +++e+v+++G+sG+GKs+++r++ + le+                         +
  CTQ27218.1 23 KINQGEVVVIIGPSGSGKSTMLRCINK-LEEItsgdlivdglkvndpkvderlirqE 78
                4456699******************96.33222334444433333333333333331 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.7e-07   9.5e-05      15      39 ..      20      44 ..      15      50 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.7e-07
      AAA_29 15 htieidlkgatlltGpsGsGKSTll 39
                 +++i++ ++++++GpsGsGKST+l
  CTQ27218.1 20 ISLKINQGEVVVIIGPSGSGKSTML 44
                456777555**************98 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.7e-05      0.02      18      48 ..      21      52 ..      16     122 .. 0.82
   2 ?    5.2   0.0     0.026        14     323     364 ..     154     194 ..     137     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.7e-05
      AAA_15 18 eidlsee.ltvliGkNnsGKSsilealdlFln 48
                +++++   + v+iG+ +sGKS+ l+ ++++ +
  CTQ27218.1 21 SLKINQGeVVVIIGPSGSGKSTMLRCINKLEE 52
                44444435*******************88755 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.026
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 k++  l++EP   L p++  ++ k +++la+++    +i TH
  CTQ27218.1 154 KPKMMLFDEPTSALDPELRHEVLKVMQDLAEEGM-TMVIVTH 194
                 577899***************************8.5555566 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1     1e-06   0.00055      14      39 ..      18      47 ..       2      49 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1e-06
      AAA_23 14 e.idF...skgltlItGpNGaGKTTildAi 39
                + i +      +++I+Gp G+GK+T l++i
  CTQ27218.1 18 HdISLkinQGEVVVIIGPSGSGKSTMLRCI 47
                2355566444799****************9 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1   0.00085      0.46     241     265 ..      23      48 ..      20      50 .. 0.91
   2 !    7.2   0.0    0.0034       1.8     324     354 ..     138     168 ..     130     207 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00085
                 EE-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAle 265
                  i +G v++I+G+   GKsT+L+ ++
  CTQ27218.1  23 KINQGeVVVIIGPSGSGKSTMLRCIN 48 
                 689999*****************997 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0034
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HH CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtN 354
                 SG   q ++i++al ++ k++L+DE tsA  
  CTQ27218.1 138 SGGQQQRVAIARALAVKPKMMLFDEPTSALD 168
                 99999***********************965 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   2.6e-06    0.0014      90     124 ..      17      52 ..       3      62 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.6e-06
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpele 124
                  l++++ ++++ +++v++G+SG GKSt++  ++  +e
   CTQ27218.1  17 LHDISLKINQgEVVVIIGPSGSGKSTMLRCINKLEE 52 
                  566666676669***************998877554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.4   5.8e-06    0.0031      17      45 ..      26      54 ..      20     195 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.8e-06
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaa 45
                +  v+v+ Gp G+GK+t+l+ ++++ e  
  CTQ27218.1 26 QGEVVVIIGPSGSGKSTMLRCINKLEEIT 54
                3459******************9988776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   7.6e-06    0.0041       5      29 ..      27      51 ..      23     200 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 7.6e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleql 29
                  ++v++G+sG+GK+t lr + +  
  CTQ27218.1 27 GEVVVIIGPSGSGKSTMLRCINKLE 51
                6789**************9988765 PP

>> RNA12  RNA12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.3e-05    0.0073      15      70 ..      25      82 ..      17     126 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.3e-05
       RNA12 15 nvntFivvkGPrGSGkkeLvldrvlkdrkk....vlvidCdelvkarndaelisaaAsql 70
                n+   +v+ GP GSGk+ ++  r +++ ++     l++d  ++ + + d++li++ A  +
  CTQ27218.1 25 NQGEVVVIIGPSGSGKSTML--RCINKLEEitsgDLIVDGLKVNDPKVDERLIRQEAGMV 82
                556679************99..8888887777789*******************998755 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.8e-05      0.01       1      37 [.      30      68 ..      30      98 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.8e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf..gvnlrdvakengl 37
                +++ G++G+GK+t+ + ++k++++  g+ + d +k n++
  CTQ27218.1 30 VVIIGPSGSGKSTMLRCINKLEEItsGDLIVDGLKVNDP 68
                789*****************9988887776666666655 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.22   1.2e+02       1      14 [.      30      43 ..      30      77 .. 0.88
   2 !   12.3   0.0   0.00017     0.095      60     129 ..     130     199 ..     114     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.22
        CobU  1 ilvtGgarSGKSef 14
                ++++G++ SGKS++
  CTQ27218.1 30 VVIIGPSGSGKSTM 43
                579*********86 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00017
        CobU  60 pldlaealkeeekkevvLvDcltlwltnllleeeaekveekleeeveellealkelkatvvlVsnEvglg 129
                  ++  + l+  ++++v++  +l++  + +l++e +++ + +l++ev ++++ l+e  +t+v+V+ E+g+ 
  CTQ27218.1 130 AHHYPSELSGGQQQRVAIARALAVKPKMMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFA 199
                 5555666666666678888888888888999988888999***************************974 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.9e-05     0.011      35      75 ..      17      57 ..       9     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-05
       Rad17 35 lkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklre 75
                l+  +L+ ++ ++++i GPsG gkst+++ + k   i   +
  CTQ27218.1 17 LHDISLKINQGEVVVIIGPSGSGKSTMLRCINKLEEITSGD 57
                5556777777789******************9987666554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   3.4e-05     0.018       1      18 [.      29      46 ..      29     205 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.4e-05
      AAA_33  1 lvllvGlpGsGKstlaer 18
                +v+++G++GsGKst ++ 
  CTQ27218.1 29 VVVIIGPSGSGKSTMLRC 46
                89************9985 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.014       7.6      20      42 ..      31      53 ..      23     133 .. 0.71
   2 ?    7.4   0.0    0.0027       1.5     526     579 ..     154     204 ..     143     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.014
      AAA_13 20 liYGwNGaGKTtLSrllrslelg 42
                +i G  G+GK+t+ r +++le+ 
  CTQ27218.1 31 VIIGPSGSGKSTMLRCINKLEEI 53
                78899**************9752 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0027
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkk 579
                 k k+  +D P S LD +    v   +++ +   ++   + i TH + f  +v  
  CTQ27218.1 154 KPKMMLFDEPTSALDPELRHEVLKVMQDLA---EEGMTMVIVTHEIGFAEKVAS 204
                 899**************************9...888888999******998875 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.7e-05     0.026      18      47 ..      25      53 ..      17     127 .. 0.84
   2 ?   -2.8   0.0         9   4.9e+03     108     119 ..     177     188 ..     146     202 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.7e-05
    ATPase_2 18 epneiyfiYGpegsGKtaLlkeiienledk 47
                ++ e+++i Gp gsGK+++l+  i++le+ 
  CTQ27218.1 25 NQGEVVVIIGPSGSGKSTMLR-CINKLEEI 53
                5689**************997.55666655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 9
    ATPase_2 108 lllekikkkgkk 119
                 ++++++ ++g  
  CTQ27218.1 177 KVMQDLAEEGMT 188
                 222222222222 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0     0.001      0.55      44      63 ..      24      43 ..       7      59 .. 0.85
   2 ?    2.8   0.0      0.16        88      97     149 ..     143     196 ..     126     204 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
   IstB_IS21 44 iekkenivllGpsGvGKshl 63
                i++ e +v++GpsG GKs +
  CTQ27218.1 24 INQGEVVVIIGPSGSGKSTM 43
                788999***********976 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.16
   IstB_IS21  97 gklaralkrllkvdllilDdlgllpldqaeaellfeviekryerrsi..iitsnl 149
                 +++a a +  +k+++++ D+  +  ld + ++++++v+++  e   +  i+t ++
  CTQ27218.1 143 QRVAIARALAVKPKMMLFDEP-TSALDPELRHEVLKVMQDLAEEGMTmvIVTHEI 196
                 455555555678899999986.678***************999866511455554 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00012     0.064       2      50 ..      29      79 ..      28      94 .. 0.80
   2 ?   -1.9   0.0       3.9   2.1e+03      65      94 ..     171     199 ..     169     217 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
                EEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-S..SCHCCCCCCHCCC CS
        cobW  2 vtvltGflGsGKTtLlnhllenraglklavivNefg..evsiDaellretg 50
                v+v+ G+ GsGK+t+l+ + + ++  +  +iv  ++  + ++D++l+r+++
  CTQ27218.1 29 VVVIIGPSGSGKSTMLRCINKLEEITSGDLIVDGLKvnDPKVDERLIRQEA 79
                799**************9998888888888887654115678888888774 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.9
                 CTT-HHHHHHHHHHHHTT-SEEEEEECTTT CS
        cobW  65 lredllkelealeereerldviliEttGla 94 
                 lr+++lk++++l+e+     vi+    G a
  CTQ27218.1 171 LRHEVLKVMQDLAEEG-MTMVIVTHEIGFA 199
                 5778888888888887.4555555555544 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00049      0.27      30      50 ..      24      44 ..      12      54 .. 0.91
   2 ?    0.7   0.1      0.63   3.4e+02      97     148 ..     133     192 ..     110     193 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00049
      AAA_25 30 lpagelallaGapgtGKttla 50
                +  ge+++++G++g+GK+t++
  CTQ27218.1 24 INQGEVVVIIGPSGSGKSTML 44
                6789***************97 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.63
      AAA_25  97 l......rddarllvldlagv.eslpLfakdrggtl..ltadvdaleaaieevegvrlvvi 148
                 +       +++r+++  +  v  +++Lf++ +      l  +v ++++++ e eg  +v++
  CTQ27218.1 133 YpselsgGQQQRVAIARALAVkPKMMLFDEPTSALDpeLRHEVLKVMQDLAE-EGMTMVIV 192
                 2555566667777788777776666666543333334456666667777777.77999986 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1    0.0011       0.6      62      89 ..     153     180 ..     118     181 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0011
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                  +++++++DE  s lD+e ++++l++++
  CTQ27218.1 153 VKPKMMLFDEPTSALDPELRHEVLKVMQ 180
                 35899******************99986 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00016     0.085      16      49 ..      19      50 ..       9      51 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00016
      AAA_27 16 drsldfsaeeadlhliyGpNEAGKstalrAisdl 49
                d sl++  ++ ++ +i+Gp  +GKst+lr i++l
  CTQ27218.1 19 DISLKI--NQGEVVVIIGPSGSGKSTMLRCINKL 50
                444555..58899*****************9987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00034      0.18       2      20 ..      29      47 ..      28      57 .. 0.90
   2 ?   -1.4   0.0       3.6   1.9e+03      45      71 ..     108     134 ..      96     187 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00034
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                +v++ G++GsGK+t+l+ +
  CTQ27218.1 29 VVVIIGPSGSGKSTMLRCI 47
                89*************9976 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.6
                 TTTS-...-HCHHHCCCCTS--SSS-C CS
       NACHT  45 lsrsgnarsladllfsqlpepaapvse 71 
                  s++ ++   ++ll+++++++ a++ +
  CTQ27218.1 108 ASKQAAEKQAKELLAKVGLAERAHHYP 134
                 455555567777777777777776655 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00044      0.24       2      42 ..      30      72 ..      29      79 .. 0.80
   2 ?   -1.0   0.0       2.6   1.4e+03      97     108 ..     186     200 ..     139     207 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00044
                EEEE--TTSSHHHHHHHH..HHHH...GGGEEEEEEEEE---- CS
    NTPase_1  2 vfiTGppGvGKtTlvkkv..lellkssgvkvgGfyteevregg 42
                v+i Gp+G+GK+T+++ +  le++ s ++ v+G+ +++ + ++
  CTQ27218.1 30 VVIIGPSGSGKSTMLRCInkLEEITSGDLIVDGLKVNDPKVDE 72
                7899**********98773357888999999999887766555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.6
                 -...EEEE---STTG CS
    NTPase_1  97 d...viviDEiGkmE 108
                 +   viv  EiG  E
  CTQ27218.1 186 GmtmVIVTHEIGFAE 200
                 123366666666655 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00037       0.2       9      32 ..      26      49 ..      20      60 .. 0.84
   2 ?   -1.4   0.0       4.8   2.6e+03     102     126 ..     154     180 ..     107     196 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00037
      AAA_19  9 kekvllvtaGpGtGKTrvlkhiva 32
                + +v++++++ G+GK+++l++i +
  CTQ27218.1 26 QGEVVVIIGPSGSGKSTMLRCINK 49
                67899**************99866 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 4.8
      AAA_19 102 eeellivDE.fqdvd.elqyrLlkall 126
                 + ++++ DE ++ +d el  ++lk + 
  CTQ27218.1 154 KPKMMLFDEpTSALDpELRHEVLKVMQ 180
                 334555555445555555555555444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00026      0.14       4      22 ..      29      47 ..      26      67 .. 0.87
   2 ?   -3.0   0.1       9.3   5.1e+03     107     131 ..     171     195 ..     170     197 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00026
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 ++i+Gpsg+GK+t+++ +
  CTQ27218.1 29 VVVIIGPSGSGKSTMLRCI 47
                699***********99876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.3
      AAA_24 107 laeefrrllkklqelrknvifiahe 131
                 l++e+ +++++l e + + +++ he
  CTQ27218.1 171 LRHEVLKVMQDLAEEGMTMVIVTHE 195
                 6788889999999989877777775 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00027      0.15      21      47 ..      28      53 ..      14      77 .. 0.84
   2 ?   -2.5   0.0       4.3   2.3e+03      94     110 ..     145     161 ..     108     204 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
                EEEEEEESTTSSHHHHHHHHCCSHCCC CS
      NB-ARC 21 lvvalvGmgGvGKttlakqilnksdev 47
                 vv + G  G+GK+t+++ i++  +e+
  CTQ27218.1 28 EVVVIIGPSGSGKSTMLRCINKL-EEI 53
                5999*************999876.555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.3
                 HHHHHHCCCTTEEEEEE CS
      NB-ARC  94 rklvrlLltkrfllvlD 110
                   + r+L  k  ++++D
  CTQ27218.1 145 VAIARALAVKPKMMLFD 161
                 44555555554444444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00056       0.3      10      54 ..      15      59 ..       8      79 .. 0.78
   2 ?   -2.2   0.0       5.3   2.9e+03     106     119 ..     168     181 ..     156     213 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00056
                     HHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EE CS
  Sigma54_activat 10 elleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfv 54
                     ++l+ i+  +++   v+i G sG+GK+++ r+i + ++ +++ ++
       CTQ27218.1 15 QVLHDISLKINQGEVVVIIGPSGSGKSTMLRCINKLEEITSGDLI 59
                     5667777778888899*****************998887776665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.3
                      -HHHHHHHHHHHHH CS
  Sigma54_activat 106 plelQekLlrvlqe 119
                      ++el +++l+v+q+
       CTQ27218.1 168 DPELRHEVLKVMQD 181
                      55555555555553 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0043       2.3      16      35 ..      24      43 ..      15      46 .. 0.90
   2 ?    1.6   0.0      0.26   1.4e+02     139     163 ..     170     194 ..     151     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0043
      ATPase 16 ipegrvvlitGepGtGKtif 35
                i +g+vv i G +G+GK+++
  CTQ27218.1 24 INQGEVVVIIGPSGSGKSTM 43
                7899**************98 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.26
      ATPase 139 vaReilrqlvrvlkklgvTailvse 163
                 ++R+++ ++++ l++ g+T ++v+ 
  CTQ27218.1 170 ELRHEVLKVMQDLAEEGMTMVIVTH 194
                 6799999999999999999999876 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0005      0.27       1      35 [.      27      61 ..      27      85 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0005
                --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHH CS
         CPT  1 ariilLnGgsssGKsslaralqevldepwlhlgvD 35
                ++++++ G s sGKs++ r++ ++ + +  +l vD
  CTQ27218.1 27 GEVVVIIGPSGSGKSTMLRCINKLEEITSGDLIVD 61
                6899*****************99887665555555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00078      0.42       2      19 ..      30      47 ..      29      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00078
      AAA_28  2 ivitGgestGKTtlleaL 19
                +vi+G++++GK+t+l+ +
  CTQ27218.1 30 VVIIGPSGSGKSTMLRCI 47
                8************99755 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0009      0.49       2      25 ..      27      49 ..      26      88 .. 0.78
   2 ?   -1.4   0.0       4.2   2.3e+03      64      90 ..     154     186 ..     128     194 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0009
      AAA_14  2 rkilvitGaRrvGKTtllkqlike 25
                ++++vi G+  +GK+t+l+ + ++
  CTQ27218.1 27 GEVVVIIGPSGSGKSTMLRCI-NK 49
                679**************8655.33 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 4.2
      AAA_14  64 kktylflDEiqev......pewekalkslvdeg 90 
                 k +++++DE   +       e+ k++++l +eg
  CTQ27218.1 154 KPKMMLFDEPTSAldpelrHEVLKVMQDLAEEG 186
                 557788888776655444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                       134  (0.00747392); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 1843.17
//
Query:       CTQ27219.1  [L=219]
Description: glutamine transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-24   87.0  14.6    1.8e-24   86.5  14.6    1.2  1  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        1.7    9.0  11.6        1.9    8.9   6.6    2.2  2  MgtE          Divalent cation transporter


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5  14.6     2e-28   1.8e-24       1     184 [.      33     217 ..      33     218 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 2e-28
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf..vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGa 92 
                   g+++G++a+    + +++ +++ +++i++++++P++v ++++++++  ++++   + + ++++++++ +++y+  i+r+a+ s+ k+++ea +alG+
    CTQ27219.1  33 GLIIGLVAGfarCFGGWIANHIALVFIEIIRGTPIVVQVMFIYFALpmAFSDLRIDPFSAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGL 129
                   78999999999667777788899******************9988896666666688888************************************* PP

  BPD_transp_1  93 srwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprvr 184
                   sr++++r+v+lP+al+ +++ l++++++++++++l   +g    +  l+ + +++   ++ +  +  a+++++l+++lv+ ++ r l++r++
    CTQ27219.1 130 SRRETIRHVILPLALRRMLPPLGNQWIISIKDTSLFIVIG----VAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRMK 217
                   ****************************************....***************9999***************************98 PP

>> MgtE  Divalent cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.6   0.00021       1.9      40     110 ..      30      97 ..      11     101 .. 0.62
   2 ?    2.9   0.2     0.015   1.4e+02      70      94 ..     185     208 ..     122     217 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00021
                 HHHHHHHHHHHHHHHHHHHHHHT-.CTSHHHHHHHHHHHHHHHHHH..HHHHHHHHHHTTS-GGGSHHHHH CS
        MgtE  40 lrvvlllgvilgllifllalllgwslllalvvglalvlvllaaallilgvllplllwklglDPdnaaiPll 110
                 l+ +l++g++ g+++ +  ++   ++++++++ +   + +++ +++ + ++lp+++  l +DP +aa+  +
  CTQ27219.1  30 LAGGLIIGLVAGFARCFGGWIA--NHIALVFIEIIRGTPIVVQVMF-IYFALPMAFSDLRIDPFSAAVVTI 97 
                 2335555555555555554443..4444445555444444443333.6899************88887665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.015
                 H....HHHHHHHHHHHHHHH..HHHHHHH CS
        MgtE  70 v....vglalvlvllaaallilgvllpll 94 
                 +    +  a+++++l+ +l+     l ++
  CTQ27219.1 185 FraleIWSAVAVIYLIITLV-----LSFI 208
                 22222333334444444444.....2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1860.37
//
Query:       CTQ27220.1  [L=248]
Description: glutamine transporter subunit; periplasmic binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-71  238.1   1.6    8.9e-71  237.9   1.6    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    9.4e-13   48.4   0.1    4.8e-11   42.9   0.1    2.4  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine
    0.00022   21.2   0.5     0.0014   18.6   0.5    2.2  1  NMT1             NMT1/THI5 like
    0.00028   20.6   0.0     0.0024   17.5   0.0    2.3  1  Phosphonate-bd   ABC transporter, phosphonate, periplasmic su


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.9   1.6     2e-74   8.9e-71       1     224 [.      27     244 ..      27     245 .. 0.97

  Alignments for each domain:
  == domain 1  score: 237.9 bits;  conditional E-value: 2e-74
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 l+v++d+++ Pf++k+   +++Gfdvdl+ aiak+l+++++++p++++++ipal+++++D+a a+itit+eR++ +dFs+ y+++g+ ++v++++    
  CTQ27220.1  27 LVVATDTAFVPFEFKQ-GDKYVGFDVDLWAAIAKELKLDYTLKPMDFSGIIPALQTKNIDLALAGITITDERKKAIDFSDGYYKSGLLVMVNANN---- 120
                 79**************.***************************************************************************654.... PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETTTHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkgdseL 198
                 ++ik+++dL+gk v+v  g+ + +++k + k + ++++f+++++a+++L +gr+dav+ d p++ y++k+ +++k+++v+e+l++++y+ia++kg++eL
  CTQ27220.1 121 NDIKDVKDLNGKVVAVKSGTGSVDYAKANIK-TKDLRQFPNIDNAYMELGTGRADAVLHDTPNILYFIKTAGNGKFKAVGESLEAQNYGIAFPKGSDEL 218
                 5788888********************9876.88***************************************************************** PP

                 HHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 199 rkainkalaelkadgtlakisekWfg 224
                 r+++n al+ l+ +gt+++i++kWfg
  CTQ27220.1 219 REKVNGALKTLRDNGTYNEIYKKWFG 244
                 *************************9 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.1   1.1e-14   4.8e-11      23     113 ..      41     118 ..      25     120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 1.1e-14
                      -GGGGEESHHHHHHHHHHHHHT-EEEEEE-TT-----BETTTTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEEES CS
  Lig_chan-Glu_bd  23 egneryeGfcidLlkelakklgfkYelklvedgkyGskkekkkewnGmigellekkadlavapltitaeReevvdFtkpfmelgisilikk 113
                      ++ ++y Gf +dL  ++ak+l+++Y+lk                 +G+i  l +k++dla+a +tit eR++++dF++ ++++g+ ++++ 
       CTQ27220.1  41 KQGDKYVGFDVDLWAAIAKELKLDYTLKPM-------------DFSGIIPALQTKNIDLALAGITITDERKKAIDFSDGYYKSGLLVMVNA 118
                      44589*********************9763.............478***************************************999875 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.5   3.2e-07    0.0014      76     145 ..     113     177 ..      59     213 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.2e-07
                 EEEEECCC-.-SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEE CS
        NMT1  76 glivlkdsg.ikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaai 145
                  ++v+++++ ik++kDL+Gk +++  +      ++   ak++++ +d+   ++  ++++ +l tg++Da++
  CTQ27220.1 113 LVMVNANNNdIKDVKDLNGKVVAVKSG---TGSVD--YAKANIKTKDLRQFPN-IDNAYMELGTGRADAVL 177
                 4666677767*************9994...34444..4677777777777777.777777999*****997 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   5.4e-07    0.0024      21     219 ..      55     231 ..      51     245 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.4e-07
                     HHHHHHHSSEEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS-EEEEEEEEETT--SEEEEEEEEETTSS.--SHHHHGG-EEEE--TT CS
  Phosphonate-bd  21 dyLseelGvevelvvatdyaavvealragqvDiaflgplayvqardqagveplatrvrsdGsasyrsviivradsd.iqsledLkgktiafvsps 114
                     +++ +el  +  l+++ d+++++ al++ ++D+a++g   + +   +++    a+  + dG  +   ++ v+a+++ i+ ++dL+gk +a+ s  
      CTQ27220.1  55 AAIAKELKLDYTLKPM-DFSGIIPALQTKNIDLALAGITITDE---RKK----AIDFS-DGYYKSGLLVMVNANNNdIKDVKDLNGKVVAVKS-- 138
                     6788999999999999.89999999999999999987544433...333....66675.999999999999998755*************955.. PP

                     -TTTTHHHHHHTCCCCT--HHHHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH-HHHHTTEEEEEEEEEEE--EEEEETTS-HHHHHH CS
  Phosphonate-bd 115 StsGylvpaalLvkeagldpeddfsevfsgshdaavlavlsgdadaaavsadaledlvaegpedkdelrviassppipndpvvvrkelseelkek 209
                      t++  +      ++a+++++d+ +  +  + d+a+  +  g+ada   ++ +    ++++     +++ + +s +  n+++++ k  s+el+ek
      CTQ27220.1 139 GTGSVDY------AKANIKTKDL-R--QFPNIDNAYMELGTGRADAVLHDTPNILYFIKTA--GNGKFKAVGESLEAQNYGIAFPKG-SDELREK 221
                     3333334......4556665554.2..346789***************9999988888775..479*****************9998.999**** PP

                     HHHHHHH--- CS
  Phosphonate-bd 210 iqdallslae 219
                     +  al +l  
      CTQ27220.1 222 VNGALKTLRD 231
                     ****998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1923.44
//
Query:       CTQ27221.1  [L=167]
Description: Fe-binding and storage protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-22   80.3   0.6    1.5e-22   80.1   0.6    1.1  1  Ferritin       Ferritin-like domain
     0.0012   18.8   0.1     0.0029   17.6   0.1    1.8  1  IQ_SEC7_PH     PH domain
  ------ inclusion threshold ------
      0.037   14.5   0.8        1.2    9.7   0.2    2.2  2  T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX d
      0.071   11.9   0.5       0.55    8.9   0.0    1.9  2  Tht1           Tht1-like nuclear fusion protein


Domain annotation for each model (and alignments):
>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.6   3.3e-26   1.5e-22       1     136 [.      30     166 ..      30     167 .] 0.93

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 3.3e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS....SHHHHHHC-SSSS....CSSHHHHHHHHHHHHHHH CS
    Ferritin   1 ikaLneqladeltaayqylamawyvkgpgleglaeffdeqaeeerehadklaerilalGgtpvltraeleeieapke....fgsveevleaalehekkv 95 
                 i++Ln+q+   +++++++++ +w+++g ++ +++e++d   +  +eh d +aer  +lGg++++t++ +    + ++     + v+++l+a+ +++  v
  CTQ27221.1  30 IELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALTEHLDTMAERAVQLGGVALGTTQVINSKTPLQSypldIHHVQDHLKALADRYAVV 128
                 689********************************************************************666666666667**************** PP

                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin  96 teslrelielaeeegDpatadfledfleeqeeheweleall 136
                  + +r++i+ a+   D  tad+++   ++ ++ +w++ea +
  CTQ27221.1 129 ANDVRKAIDEAK---DEDTADIFTAASRDLDKFLWFIEANI 166
                 *******99998...66********************9866 PP

>> IQ_SEC7_PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   6.4e-07    0.0029      15      59 ..      16      59 ..       4     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6.4e-07
  IQ_SEC7_PH 15 ycrLyevvDpnkkeksglhqRevflFndlllvtklvkkkkssvty 59
                y+r  +v+D +kk    l +R+v+ F dl l+tk  + + + +++
  CTQ27221.1 16 YTR-NDVADSEKKATIELLNRQVIQFIDLSLITKQAHWNMRGANF 59
                565.79****************************98877666444 PP

>> T7SS_ESX_EspC  Excreted virulence factor EspC, type VII ESX diderm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.029   1.3e+02      37      76 ..      48      87 ..      40      93 .. 0.87
   2 ?    9.7   0.2   0.00026       1.2       8      42 ..     114     148 ..     110     157 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.029
  T7SS_ESX_EspC 37 saavldshGpicaatndavaaaeaarraagealaaasteL 76
                   ++a ++  G+ + a++ +++ +++a ++ ++ +a+ + +L
     CTQ27221.1 48 KQAHWNMRGANFIAVHEMLDGFRTALTEHLDTMAERAVQL 87
                   57788999999999*************9999999988776 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00026
  T7SS_ESX_EspC   8 dpdhlrelaakhdevaaeiasavaaaagasaavld 42 
                    + dhl++la+++  va ++++a + a+++ +a   
     CTQ27221.1 114 VQDHLKALADRYAVVANDVRKAIDEAKDEDTADIF 148
                    569***********************888877655 PP

>> Tht1  Tht1-like nuclear fusion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.017        77     301     345 ..       7      51 ..       2      84 .. 0.79
   2 ?    8.9   0.0   0.00012      0.55     236     305 ..      94     166 ..      62     167 .] 0.78

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.017
        Tht1 301 mekrlkdlvetsedslkesvssnidlvnsgfqeledlsiqlkkel 345
                 ++ +  +lv t +d      +  i+l+n  + ++ dls+  k+  
  CTQ27221.1   7 VKSKASNLVYTRNDVADSEKKATIELLNRQVIQFIDLSLITKQAH 51 
                 5667889*******7777778899****99999999999888765 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00012
        Tht1 236 ekeilekikqlksevddvnsi...ladlieelagykndlkeklnekddsenaialsaigkytsefsafmekrl 305
                   ++++    l+s   d++++   l  l++  a   nd+++ ++e  d   a  ++a ++   +f  f+e ++
  CTQ27221.1  94 TTQVINSKTPLQSYPLDIHHVqdhLKALADRYAVVANDVRKAIDEAKDEDTADIFTAASRDLDKFLWFIEANI 166
                 4678888888888666666652227889*****************6666666788888999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       926  (0.0516482); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1229.90
//
Query:       CTQ27222.1  [L=295]
Description: threonine and homoserine efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-22   79.4  33.8    4.6e-18   65.7  12.5    2.2  2  EamA      EamA-like transporter family
  ------ inclusion threshold ------
      0.067   13.2   1.7       0.37   10.9   0.5    2.8  2  DUF4567   Domain of unknown function (DUF4567)
       0.61   10.5   3.5        6.3    7.3   0.1    3.4  4  ATP19     ATP synthase subunit K
        4.2    6.6   7.0       0.43    9.9   0.7    2.3  3  TPT       Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8  13.3   1.5e-07   0.00068       2     110 ..      12     116 ..      11     136 .. 0.85
   2 !   65.7  12.5     1e-21   4.6e-18       2     133 ..     148     277 ..     147     281 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.5e-07
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsl 100
                 l+il++l+a+ +  +++ l+k l+  v    +t++r+ +++++l+++  +++ ++   s+ +   lll+g l+  ++++lf+ +l++++ ++a+ + ++
  CTQ27222.1  12 LPILVILVAMTSIQSGASLAKSLFPVVGAPGVTALRLALGTLILVVVFKPWRLRF---SPAQRVPLLLYG-LALGAMNYLFYLSLQRIPLGVAVALEFT 106
                 57899***************************************99988888888...666655566666.677788899******************* PP

        EamA 101 ePvftlilsv 110
                  P+ ++++++
  CTQ27222.1 107 GPLAVALFGS 116
                 *******986 PP

  == domain 2  score: 65.7 bits;  conditional E-value: 1e-21
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsl 100
                  g+l+al a  +wa+y+++ +++ +++ p t+++  +lia+++++++ + ++     + ++ + l l +++l+t+l ++l ++al++++  + + ++sl
  CTQ27222.1 148 TGALFALGAGACWAVYILTGQRAGEEHGPATVAM-GSLIASLVFVPLGMAQATDT-LWQWSLLPLGLGIAILSTALPYSLEMMALTRLPTRTFGTLMSL 244
                 699****************************997.5579****************.******************************************* PP

        EamA 101 ePvftlilsvlllgekltlkqllgivlillGvl 133
                 eP+++++ ++++lge+l+l+q l+++ i+++ +
  CTQ27222.1 245 EPALAALSGMIFLGETLKLSQTLALGAIIIASM 277
                 *****************************9865 PP

>> DUF4567  Domain of unknown function (DUF4567)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   8.2e-05      0.37      17      64 ..      26      71 ..      15      74 .. 0.71
   2 ?   -0.5   0.0      0.29   1.3e+03       7      25 ..      95     113 ..      90     116 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.2e-05
     DUF4567 17 lgkalamalpplvve.gpathhiaggrladlalgvafgpwrvrlslvrq 64
                 g +la +l p+v   g ++  +a   l  l l v f pwr+r+s  ++
  CTQ27222.1 26 SGASLAKSLFPVVGApGVTALRLA---LGTLILVVVFKPWRLRFSPAQR 71
                577888888886643133333444...557899**********997665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.29
     DUF4567   7 tplglqhhlelgkalamal 25 
                  plg+   le+   la+al
  CTQ27222.1  95 IPLGVAVALEFTGPLAVAL 113
                 6899999999999999987 PP

>> ATP19  ATP synthase subunit K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.045     2e+02      17      27 ..      48      58 ..      42      68 .. 0.84
   2 ?   -3.0   0.0       2.3     1e+04      22      32 ..     151     161 ..     149     183 .. 0.53
   3 ?   -2.4   0.1       1.4   6.4e+03      13      29 ..     175     191 ..     162     198 .. 0.72
   4 ?    7.3   0.1    0.0014       6.3      14      41 ..     264     291 ..     256     295 .] 0.85

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.045
                SHHHHHHHHH- CS
       ATP19 17 LAlgtLgttgl 27
                LAlgtL+++++
  CTQ27222.1 48 LALGTLILVVV 58
                9*****99875 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.3
                 HHHHH--XXXX CS
       ATP19  22 Lgttglivyla 32 
                 L+++g+++ +a
  CTQ27222.1 151 LFALGAGACWA 161
                 44444444333 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.4
                 --S-SHHHHHHHHH--X CS
       ATP19  13 kshyLAlgtLgttgliv 29 
                 ++   A+g L++  + v
  CTQ27222.1 175 GPATVAMGSLIASLVFV 191
                 56678899888765554 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0014
                 -S-SHHHHHHHHH--XXXXXXXXXXXX. CS
       ATP19  14 shyLAlgtLgttglivylamggskkkka 41 
                 s+ LAlg ++ + +++ l m  ++k ++
  CTQ27222.1 264 SQTLALGAIIIASMGATLTMQRQSKVEQ 291
                 789******************9999663 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.12   5.4e+02      22      58 ..      32      68 ..      19     113 .. 0.67
   2 ?   -2.8   0.1      0.71   3.2e+03       4      19 ..     127     142 ..     124     146 .. 0.79
   3 ?    9.9   0.7   9.5e-05      0.43      41     138 ..     181     282 ..     172     284 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.12
         TPT 22 KkilnvfpyPltvsavqllvgsvlilvlwal.glkkrp 58
                K ++ v++ P  v+a++l+ g+++++v+++  +l+  p
  CTQ27222.1 32 KSLFPVVGAPG-VTALRLALGTLILVVVFKPwRLRFSP 68
                55566666664.67888888888888877654444333 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.71
         TPT   4 gllfllWYllnvvfni 19 
                 + +++lWYll +  n+
  CTQ27222.1 127 LAILGLWYLLPLGQNV 142
                 5678999999988887 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 9.5e-05
         TPT  41 vgsvlilvlwal.glkkrpkisse..flkailplalvkt.lghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvala 135
                 +gs++++++++  g++++++  ++  +l   l +a++ t l   l +++l++ +     t+ ++eP+ +++   ++lge+l+l+  l+L  i+   + a
  CTQ27222.1 181 MGSLIASLVFVPlGMAQATDTLWQwsLLPLGLGIAILSTaLPYSLEMMALTRLPTRTFGTLMSLEPALAALSGMIFLGETLKLSQTLALGAIIIASMGA 279
                 44544444444337777777766633444445555544314456778888888888888999***************************9999877777 PP

         TPT 136 svt 138
                 ++t
  CTQ27222.1 280 TLT 282
                 776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2068.29
//
Query:       CTQ27223.1  [L=170]
Description: outer membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-25   88.2  18.1    8.7e-25   87.9  18.1    1.0  1  OMP_b-brl        Outer membrane protein beta-barrel domain
    4.5e-23   82.0   5.7    1.2e-13   51.2   1.9    2.3  2  Ail_Lom          Enterobacterial Ail/Lom protein
     0.0045   16.8   0.3     0.0066   16.3   0.3    1.3  1  PGG              Domain of unknown function
  ------ inclusion threshold ------
      0.021   14.8  12.7      0.025   14.6  12.7    1.1  1  Phenol_MetA_deg  Putative MetA-pathway of phenol degradation
        0.1   11.9   3.4       0.12   11.6   2.9    1.5  1  DUF3575          Protein of unknown function (DUF3575)


Domain annotation for each model (and alignments):
>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9  18.1   2.4e-28   8.7e-25       2     178 .]      11     170 .]       9     170 .] 0.92

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 2.4e-28
   OMP_b-brl   2 allllaalsaaaaaassfggfyvggglglskvkvdgvgsdsgfgfgvgagyef.ndnvgvegglsysgdkdysgsgktdikinllsvpvnagyafnlsd 99 
                 a++l+a+++++a+aa+s     v+gg+++s+++  g + ++ +gf++++ ye  n+++gv g+++y++++++s      +  + ++++++ag a++l+d
  CTQ27223.1  11 AVVLAASVGTTAFAATS----TVTGGYAQSDMQ--GKA-NKAGGFNLKYRYEQdNNPLGVIGSFTYTEKDNNSN----GTYNKGQYYGITAGPAYRLND 98 
                 78888889999999*98....7***********..444.3479*********96779*********99998888....4446999************** PP

   OMP_b-brl 100 svlpyggaGlgytkvevdvsgngasdsdtdfglglgaGveyaladnwslkaeYrytdlksdadndlknntfqvgvgyrF 178
                 + ++yg +G+gy+k++ ++     +++ +d g+++gaG++++  +n++l+++Y+++ +      ++++ t+ +gvgyrF
  CTQ27223.1  99 WASIYGVVGVGYGKFQNNNYPH--KSDMSDYGFSYGAGLQFNPIENVALDFSYEQSRI-----RNVDVGTWIAGVGYRF 170
                 ******************9999..**********************************.....**************** PP

>> Ail_Lom  Enterobacterial Ail/Lom protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   1.9   3.4e-17   1.2e-13       9     124 ..       7     113 ..       1     120 [. 0.77
   2 !   32.4   0.1     2e-11     7e-08     152     199 .]     123     170 .]     114     170 .] 0.92

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 3.4e-17
     Ail_Lom   9 lsavvllvvagvpasaaehqstlsagylqastdapgs.ddlnginvkyryeft.dtlglitsfsyanaedeqkthysdtrwhedsvrnrwfsvmagpsv 105
                 lsa  ++ +a v ++a    st++ gy q  +d+ g  +   g n+kyrye   + lg+i sf+y++ +++ +  y+           +++ + agp+ 
  CTQ27223.1   7 LSALAVVLAASVGTTAFAATSTVTGGYAQ--SDMQGKaNKAGGFNLKYRYEQDnNPLGVIGSFTYTEKDNNSNGTYNK---------GQYYGITAGPAY 94 
                 555444444445555555579******76..688886155679********86257**********999988888875.........56899******* PP

     Ail_Lom 106 rvnewfsayalagvayarv 124
                 r+n+w s y + gv y + 
  CTQ27223.1  95 RLNDWASIYGVVGVGYGKF 113
                 ****************875 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 2e-11
     Ail_Lom 152 rrsntalaysagvqinptesvvvdlayeasgrgdwrteafivgvgykf 199
                   s+  ++y+ag+q+np e+v++d +ye s   +    ++i gvgy+f
  CTQ27223.1 123 DMSDYGFSYGAGLQFNPIENVALDFSYEQSRIRNVDVGTWIAGVGYRF 170
                 46778899***************************************9 PP

>> PGG  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3   1.8e-06    0.0066       6      46 ..       6      43 ..       1      56 [. 0.73

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.8e-06
         PGG  6 etrktlllvAtLiAtvtFaAgftlPGgywqdddkksaGkpv 46
                + +   +++A+ + t +FaA+ t+ Ggy q+d    +Gk++
  CTQ27223.1  6 RLSALAVVLAASVGTTAFAATSTVTGGYAQSDM---QGKAN 43
                5566778889999999************88874...44443 PP

>> Phenol_MetA_deg  Putative MetA-pathway of phenol degradation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6  12.7   6.8e-06     0.025      98     241 .]      27     170 .]      14     170 .] 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.8e-06
  Phenol_MetA_deg  98 nlPtGdydknrl.nlGsnywsfsptvaltyqladgwelsanlgydfngenddtdyqsgqefhldlalgyaftpgkwsvglvgyyytqltddkgn 190
                       + tG y   +     +   +f++++ +    ++ + + ++++y+   +n++ +y +gq++ +++   y++++     g+vg +y+ ++++  +
       CTQ27223.1  27 STVTGGYAQSDMqGKANKAGGFNLKYRYEQD-NNPLGVIGSFTYTEKDNNSNGTYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQNNNYP 119
                      5567777777774444446677777777776.9999***********************************555444689999*****999998 PP

  Phenol_MetA_deg 191 gadgnrgrvfalGpglaylfspnlqldasagkglevaarnrfegaglslrf 241
                      + ++     f  G+gl+++  +n  ld+s+  ++  ++  ++  ag+ +rf
       CTQ27223.1 120 HKSDMSDYGFSYGAGLQFNPIENVALDFSYEQSRIRNVDVGTWIAGVGYRF 170
                      877777777*********************998777776666666666665 PP

>> DUF3575  Protein of unknown function (DUF3575)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.9   3.4e-05      0.12     103     151 ..      77     123 ..      43     150 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.4e-05
     DUF3575 103 kdkryeGdlygaGisyGYqwvlskrwnleasiGlGyarlkydkyecekc 151
                 + +  +G++y  Gi++G ++ l++  ++   +G+Gy +++ ++y+ ++ 
  CTQ27223.1  77 NGTYNKGQYY--GITAGPAYRLNDWASIYGVVGVGYGKFQNNNYPHKSD 123
                 3333446666..79******************************87664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1365.59
//
Query:       CTQ27224.1  [L=526]
Description: putative enzyme, UPF0141 family, inner membrane [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-39  136.2   3.0    1.9e-39  135.9   3.0    1.1  1  Sulfatase  Sulfatase


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   3.0   1.1e-43   1.9e-39       3     309 .]     219     483 ..     217     483 .. 0.93

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 1.1e-43
                 EEEEEESSE-TTGSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTTHHCTTTS-HHHHHHHHTT-EEEEEEE CS
   Sulfatase   3 vvliladdlgagdlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgggglpqteatLpellkeaGYntaaigk 101
                 +v++++++++++ lg++gg+  +tp+ +    +g++f+n+++a++++++s+  +l++                +g+pq ++++++l ++aG++t     
  CTQ27224.1 219 YVVVIGESARRDALGAFGGHWDNTPFAS--SVNGYLFNNYIAASGSTQKSLGLTLNRVV--------------DGKPQYQDNFVTLANRAGFQT----- 296
                 79*************************9..9************************7776..............9********************..... PP

                 S-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHHHCCCTSSEEEEEEE-TTSSSTCTCGGHTCCGSTTT CS
   Sulfatase 102 whlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrvppeggysddrlldealefllarndkpfflylatlapHappeapdeyakkyatff 200
                    +w+s+q+  + + +d+ +++++ +a+  +  k++++        ++++ d++ll+ ++++l  ++++p++++l+++++H   +a+d+  +ky  f 
  CTQ27224.1 297 ---WWFSNQG--QIGEYDTAIASIAKRADEVQFLKNGDFE------ANKNTQDEQLLKLTEQVLSTQRTQPQLIVLHLMGSHP--QACDRTKGKYTVFV 382
                 ...*******..4666888888777777777777777775......569**************86666**************6..*************9 PP

                 TCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCEEECSEEEGGGH CS
   Sulfatase 201 ddgseaarqlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekaprvseelvshiDl 299
                 ++      +  ++yl s++++D l+++++++L  ++  d   + ++SDhg + +e ++  +   ++++ ++ ++vP++v +++ ka++v ++  s++D+
  CTQ27224.1 383 QS------KETSCYLYSMTQTDSLLAKLYHQL--QNSGDTFSLTYFSDHGLAFKERGKEVQYLAHDDKFQQNFQVPFMVLSSDDKAHKVIKAQRSANDF 473
                 77......999*********************..9999*****************99999999999********************************* PP

                 HHHHHHHTTE CS
   Sulfatase 300 fptildlagi 309
                 +  + +++gi
  CTQ27224.1 474 LSFFSQWTGI 483
                 ****999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.38
# Mc/sec: 4172.47
//
Query:       CTQ27225.1  [L=41]
Description: Small protein MntS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.22s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 384.21
//
Query:       CTQ27226.1  [L=157]
Description: DNA-binding transcriptional regulator of mntH [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-14   52.1   0.1    1.1e-13   51.0   0.1    1.6  1  Fe_dep_repr_C   Iron dependent repressor, metal binding and d
      6e-10   39.2   0.0    1.3e-09   38.1   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
    1.4e-06   28.2   0.1    3.7e-05   23.6   0.0    2.2  2  HTH_Crp_2       Crp-like helix-turn-helix domain
    5.6e-06   26.2   0.2    1.5e-05   24.8   0.1    1.7  1  MarR_2          MarR family
    7.3e-06   25.8   0.0    1.6e-05   24.7   0.0    1.5  1  MarR            MarR family
      9e-05   22.1   0.3    0.00041   19.9   0.1    2.2  2  GntR            Bacterial regulatory proteins, gntR family
    0.00016   21.5   0.0    0.00027   20.8   0.0    1.3  1  TrmB            Sugar-specific transcriptional regulator TrmB
    0.00019   20.9   0.0    0.00031   20.2   0.0    1.4  1  HTH_24          Winged helix-turn-helix DNA-binding
    0.00054   19.7   0.0      0.001   18.8   0.0    1.4  1  HTH_IclR        IclR helix-turn-helix domain
     0.0016   18.6   0.1     0.0038   17.3   0.0    1.8  1  AbiEi_4         Transcriptional regulator, AbiEi antitoxin
     0.0032   17.3   0.0     0.0095   15.8   0.0    1.8  2  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
     0.0039   17.2   0.0     0.0081   16.2   0.0    1.5  1  HTH_20          Helix-turn-helix domain
      0.005   16.8   0.1      0.018   15.0   0.1    2.0  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0063   16.6   0.0      0.011   15.9   0.0    1.4  1  DUF2250         Uncharacterized protein conserved in archaea 
     0.0064   16.1   0.0      0.016   14.8   0.0    1.7  1  HTH_50          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.012   15.6   0.0       0.02   14.8   0.0    1.4  1  HTH_36          Helix-turn-helix domain
      0.013   15.2   0.3       0.89    9.3   0.0    2.6  2  HTH_DeoR        DeoR-like helix-turn-helix domain
      0.013   15.9   0.2       0.35   11.4   0.0    2.6  2  HTH_27          Winged helix DNA-binding domain
      0.017   15.0   0.0      0.033   14.1   0.0    1.5  1  HTH_5           Bacterial regulatory protein, arsR family
      0.019   14.9   0.1      0.049   13.6   0.0    1.7  1  HTH_37          Helix-turn-helix domain
      0.025   14.4   0.1      0.058   13.2   0.1    1.6  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.027   14.3   0.0      0.096   12.5   0.0    2.1  2  HTH_23          Homeodomain-like domain
      0.033   14.2   0.0      0.054   13.5   0.0    1.3  1  HTH_45          Winged helix-turn-helix
      0.042   14.2   0.2       0.18   12.1   0.1    2.0  2  HTH_31          Helix-turn-helix domain
      0.056   13.8   0.0       0.11   12.9   0.0    1.6  1  Rrf2            Transcriptional regulator
      0.062   12.9   0.0       0.12   12.1   0.0    1.5  2  STD1            STD1/MTH1
      0.063   13.1   0.1       0.15   12.0   0.0    1.7  2  TFIIE_alpha     TFIIE alpha subunit
      0.067   13.0   0.0       0.21   11.4   0.0    1.9  2  HTH_38          Helix-turn-helix domain
      0.069   13.1   0.0       0.23   11.5   0.0    1.9  2  HTH_6           Helix-turn-helix domain, rpiR family
      0.079   13.0   0.0       0.18   11.8   0.0    1.6  1  HTH_29          Winged helix-turn helix
      0.081   13.2   0.2       0.22   11.8   0.1    1.8  1  KORA            TrfB plasmid transcriptional repressor
      0.093   12.3   0.1       0.16   11.6   0.1    1.5  1  HTH_47          winged helix-turn-helix
       0.12   12.4   0.0       0.34   11.0   0.0    1.8  2  DUF2089         Protein of unknown function (DUF2089)
       0.13   12.1   0.0       0.28   11.0   0.0    1.5  1  HTH_10          HTH DNA binding domain


Domain annotation for each model (and alignments):
>> Fe_dep_repr_C  Iron dependent repressor, metal binding and dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.1   2.1e-16   1.1e-13       1      55 [.      95     148 ..      95     154 .. 0.92

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 2.1e-16
                    -HHHHHHHHHHHHHHHHHHHHHHHHCT--CCCHHHHCCCCGGGS-HHHHHHHHHH CS
  Fe_dep_repr_C   1 TekGrelAkrlvrrhrllerfLvdvlgvdweeaheeAerlEhalseelierldel 55 
                    T++G++lA++  +rh+++e+fL   +gv++e+a ++Ae +Eh++see++  + ++
     CTQ27226.1  95 TPEGEKLAQESRERHQIVENFLLA-IGVSPEIARRDAEGMEHHVSEETLAMFLKF 148
                    9*********************66.**********************98766665 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   2.4e-12   1.3e-09       6      59 ..      38      91 ..      35      92 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 2.4e-12
                    HHHHHHHHHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTE CS
  Fe_dep_repress  6 tEdYLetIYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyveyekykg 59
                    ++dY e I +l +e + +++ d+a rL+vs ++V +mlk+L++ G++e  + +g
      CTQ27226.1 38 IDDYVELISDLINEVGEARQVDMAARLGVSQPTVAKMLKRLASVGLIEQIPWRG 91
                    78*********************************************9888777 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0     7e-08   3.7e-05      23      54 ..      56      88 ..      30     103 .. 0.85
   2 ?    2.6   0.0      0.25   1.3e+02       6      36 ..     115     151 ..     112     156 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 7e-08
                HHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2 23 tqeelAsmlGltretvsrilseLkreglis.rg 54
                 q ++A++lG+++ tv ++l++L   gli+   
  CTQ27226.1 56 RQVDMAARLGVSQPTVAKMLKRLASVGLIEqIP 88
                5789*************************9533 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.25
                 HHHHH......HCTTTC.EEEEEHHHHHHHHHTTSSHH CS
   HTH_Crp_2   6 fLlrl......aeragg.eielpltqeelAsmlGltre 36 
                 fLl +      a+r+ +   e +++ e lA +l  t+ 
  CTQ27226.1 115 FLLAIgvspeiARRD-AeGMEHHVSEETLAMFLKFTQT 151
                 777776666554443.2368899********9988876 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   2.9e-08   1.5e-05      22      53 ..      55      86 ..      44      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2.9e-08
                EEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2 22 ltvgelarrlglsksavsrilkrLvaaGLver 53
                 ++ + a+rlg+s+++v ++lkrL + GL+e+
  CTQ27226.1 55 ARQVDMAARLGVSQPTVAKMLKRLASVGLIEQ 86
                6899**************************97 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0     3e-08   1.6e-05      12      48 ..      49      85 ..      47      88 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 3e-08
                HHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR 12 lyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                + e g++++ ++a +lgvs++tv ++l+rL   Glie
  CTQ27226.1 49 INEVGEARQVDMAARLGVSQPTVAKMLKRLASVGLIE 85
                7788999*****************************8 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.6   1.4e+03      41      47 ..      29      35 ..      27      49 .. 0.77
   2 !   19.9   0.1   7.9e-07   0.00041      30      63 ..      60      93 ..      54      94 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.6
                HHHHHHH CS
        GntR 41 vReALrr 47
                vReA+rr
  CTQ27226.1 29 VREAHRR 35
                8999998 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 7.9e-07
                HHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEE CS
        GntR 30 LaaefgVsrttvReALrrLeaeglverrqgrGtf 63
                 aa++gVs +tv + L+rL++ gl+e  + rG+f
  CTQ27226.1 60 MAARLGVSQPTVAKMLKRLASVGLIEQIPWRGIF 93
                799**************************99998 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     5e-07   0.00027      19      56 ..      51      88 ..      41      96 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5e-07
                HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEES CS
        TrmB 19 klgpatadeiaeelgvprskvYevLrsLedkGlVerek 56
                + g+a+  + a +lgv++++v ++L++L + Gl+e ++
  CTQ27226.1 51 EVGEARQVDMAARLGVSQPTVAKMLKRLASVGLIEQIP 88
                5688889999*************************876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.8e-07   0.00031      18      48 .]      55      85 ..      39      85 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.8e-07
      HTH_24 18 isqreLAerlglSpstvnrrlkrLeeeGlIk 48
                  q + A rlg+S++tv + lkrL + GlI+
  CTQ27226.1 55 ARQVDMAARLGVSQPTVAKMLKRLASVGLIE 85
                56899********************999996 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.9e-06     0.001      19      51 ..      55      87 ..      47      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.9e-06
                -BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR 19 ltlselArrtglpkStvhRlLqtLvelGyveqd 51
                 +  ++A+r+g++ +tv  +L+ L   G++eq 
  CTQ27226.1 55 ARQVDMAARLGVSQPTVAKMLKRLASVGLIEQI 87
                477899*************************96 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.3e-06    0.0038      19      47 ..      58      94 ..      35      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.3e-06
     AbiEi_4 19 l..ea.aGispsa....lrrLvrkGwLvrlr.rGvYa 47
                +  +a +G+s  +    l rL + G++++++ rG+ +
  CTQ27226.1 58 VdmAArLGVSQPTvakmLKRLASVGLIEQIPwRGIFL 94
                344666*****888********************975 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.8e-05    0.0095       2      36 ..      46      80 ..      45      88 .. 0.74
   2 ?   -2.4   0.0       8.9   4.7e+03      13      29 ..     100     116 ..      98     127 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.8e-05
  YdaS_antitoxin  2 kkaieivGg..qkaLAealgvsqqaVsqWlkgkkqvp 36
                     ++i+ vG+  q+ +A +lgvsq++V ++lk  + ++
      CTQ27226.1 46 SDLINEVGEarQVDMAARLGVSQPTVAKMLK--RLAS 80
                    567888887336789**************95..4444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 8.9
  YdaS_antitoxin  13 aLAealgvsqqaVsqWl 29 
                     +LA++     q V+++l
      CTQ27226.1 100 KLAQESRERHQIVENFL 116
                     56666666666676665 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-05    0.0081      30      56 ..      60      86 ..      58      88 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.5e-05
                HHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 30 laerldlskntlsyHLrvLeeagLvev 56
                 a+rl++s+ t+ + L+ L+++gL+e+
  CTQ27226.1 60 MAARLGVSQPTVAKMLKRLASVGLIEQ 86
                79***********************97 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   3.4e-05     0.018      20      59 ..      61      98 ..      48      99 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.4e-05
                HHHHTS-HHHHHHHHHHHHHHHTS-SEEESS.SEEEE-HHH CS
       HTH_1 20 AeeLglsqpavsrqikrLEeelgvpLfeRtg.rglrLTeaG 59
                A +Lg+sqp+v +++krL +   v L+e    rg+ LT++G
  CTQ27226.1 61 AARLGVSQPTVAKMLKRLAS---VGLIEQIPwRGIFLTPEG 98
                668*************9954...555554332467777776 PP

>> DUF2250  Uncharacterized protein conserved in archaea (DUF2250)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     2e-05     0.011      27      78 ..      59     110 ..      32     111 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-05
     DUF2250  27 siakeleipleevrellkkLeelGLlervegktikrteaklKkksevhkhHt 78 
                  +a +l +++  v ++lk+L ++GL+e+   + i  t    K+++e + +H+
  CTQ27226.1  59 DMAARLGVSQPTVAKMLKRLASVGLIEQIPWRGIFLTPEGEKLAQESRERHQ 110
                 689999******************************************9995 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     3e-05     0.016      15      46 ..      44      77 ..      31      78 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3e-05
      HTH_50 15 likkayekYpStRk..lAkrLGvShtaianklrk 46
                li +++++ + +R   +A+rLGvS+ ++a+ l++
  CTQ27226.1 44 LISDLINEVGEARQvdMAARLGVSQPTVAKMLKR 77
                66666666667775337************99987 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.9e-05      0.02      28      55 .]      57      84 ..      46      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.9e-05
      HTH_36 28 qetlakrlglsknTvsraikeLeqlGyi 55
                q ++a+rlg+s  Tv + +k L+  G+i
  CTQ27226.1 57 QVDMAARLGVSQPTVAKMLKRLASVGLI 84
                6689********************9998 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0017      0.89       4      45 ..      44      85 ..      42      87 .. 0.89
   2 ?    3.3   0.0      0.13        67      23      39 ..     118     134 ..     105     141 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0017
    HTH_DeoR  4 qilellkqqgklsveelvellgvSeaTiRRDLneLeeqgllt 45
                 i +l+++ g  +  + +++lgvS+ T+ + L+ L+  gl++
  CTQ27226.1 44 LISDLINEVGEARQVDMAARLGVSQPTVAKMLKRLASVGLIE 85
                578899999999999*************99999999999886 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.13
    HTH_DeoR  23 llgvSeaTiRRDLneLe 39 
                   gvS++ +RRD + +e
  CTQ27226.1 118 AIGVSPEIARRDAEGME 134
                 579*********66555 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00066      0.35      13      50 ..      50      86 ..       3      98 .. 0.92
   2 ?    2.4   0.0      0.43   2.3e+02      14      37 ..     132     156 ..     124     157 .] 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00066
      HTH_27 13 rhrrrrkkladlcgrlnvedshisyslkkLtekGLver 50
                + +++++++ d + rl v++ +++++lk+L   GL+e+
  CTQ27226.1 50 N-EVGEARQVDMAARLGVSQPTVAKMLKRLASVGLIEQ 86
                4.77888999999***********************75 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.43
      HTH_27  14 hrrrrkkladlcgrlnvedshis.y 37 
                 ++++ ++++ l+ +l+++++++s +
  CTQ27226.1 132 GMEHHVSEETLAMFLKFTQTQGSqE 156
                 788889999************9955 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   6.2e-05     0.033      14      46 ..      53      85 ..      42      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.2e-05
                SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5 14 gelcvcelaeelglsqstvShHLkkLreaGLVe 46
                ge+   + a+ lg+sq+tv   Lk+L   GL+e
  CTQ27226.1 53 GEARQVDMAARLGVSQPTVAKMLKRLASVGLIE 85
                666667889**********************97 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.2e-05     0.049      29      58 ..      52      80 ..      29      83 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.2e-05
                HCT--HHHHHHHHT--HHHHHHHHTT--TT CS
      HTH_37 29 krelsqseaaqllgiaqPkvsrllrgklsr 58
                  e +q ++a++lg++qP v ++l+ +l +
  CTQ27226.1 52 VGEARQVDMAARLGVSQPTVAKMLK-RLAS 80
                4467899*****************8.6655 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   0.00011     0.058      18      41 ..      55      78 ..      44      79 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
  HTH_AsnC-type 18 isyaeLAervGlSestvlrRvrrL 41
                   +   ++A+r+G+S++tv++ ++rL
     CTQ27226.1 55 ARQVDMAARLGVSQPTVAKMLKRL 78
                   666799************999998 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00018     0.096      24      42 ..      61      79 ..      29      86 .. 0.85
   2 ?   -1.9   0.0       5.9   3.1e+03       3      15 ..     104     116 ..     102     126 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00018
      HTH_23 24 AreLgvsrrTvyrwlkryr 42
                A++Lgvs+ Tv + lkr +
  CTQ27226.1 61 AARLGVSQPTVAKMLKRLA 79
                99**************964 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5.9
      HTH_23   3 sereRlrilllla 15 
                 + reR +i+  ++
  CTQ27226.1 104 ESRERHQIVENFL 116
                 5678888886655 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0    0.0001     0.054       5      75 ..      42     111 ..      40     113 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.0001
      HTH_45   5 leIiadILeaisegeakkTkimykanLsykllnkYLdmLvekglikk.skekYvlTekGlelleklkeleel 75 
                 +e i+d+ + +  gea++  +  +   s  ++ k+L+ L + gli++       lT +G++l ++ +e +++
  CTQ27226.1  42 VELISDLINEV--GEARQVDMAARLGVSQPTVAKMLKRLASVGLIEQiPWRGIFLTPEGEKLAQESRERHQI 111
                 67889999988..99999999999999******************998999999**********99988765 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00035      0.18       7      35 ..      27      75 ..      25      83 .. 0.87
   2 ?   -0.6   0.0       3.4   1.8e+03      32      50 ..     127     145 ..     100     156 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00035
      HTH_31  7 ralRera....................GLsqeevAerlgvsestlsrlE 35
                r+ Re++                      +q ++A+rlgvs+ t+ ++ 
  CTQ27226.1 27 RQVREAHrreliddyvelisdlinevgEARQVDMAARLGVSQPTVAKML 75
                77888888888999999999999999779****************9986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 3.4
      HTH_31  32 srlEqGrrgrpspavleal 50 
                 +r   G +  +s+++l+ +
  CTQ27226.1 127 RRDAEGMEHHVSEETLAMF 145
                 3333343444555555555 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0    0.0002      0.11      27      58 ..      56      87 ..      42     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.0002
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        Rrf2 27 sseeiaerqnispsylekilakLrkaglvksv 58
                +  ++a+r ++s++ ++k+l++L+  gl++ +
  CTQ27226.1 56 RQVDMAARLGVSQPTVAKMLKRLASVGLIEQI 87
                55689************************965 PP

>> STD1  STD1/MTH1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.9   1.5e+03     168     186 ..      23      44 ..       8      53 .. 0.66
   2 ?   12.1   0.0   0.00022      0.12     137     194 ..      46     126 ..      29     136 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.9
        STD1 168 s...kelskpewrnIirnYLln 186
                      ++ + ++r++i  Y+  
  CTQ27226.1  23 VegfRQVREAHRRELIDDYVEL 44 
                 2555677788888888888765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00022
        STD1 137 SdlYkEh....nldysfklsvAkysvkkarklqeqs...................kelskpewrnIirnYLlnLAveaqcr 194
                 Sdl  E     ++d++ +l v + +v+k  k+ ++                        + e+ +I++n+Ll + v   ++
  CTQ27226.1  46 SDLINEVgearQVDMAARLGVSQPTVAKMLKRLASVglieqipwrgifltpegekLAQESRERHQIVENFLLAIGVSPEIA 126
                 677666666679***********************9*****************76566678999**********9976665 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00028      0.15      14      59 ..      41      86 ..      29     102 .. 0.85
   2 ?   -2.4   0.0       8.3   4.4e+03      26      42 ..     135     151 ..     132     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00028
                 HHHHHHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEE CS
  TFIIE_alpha 14 eavlvldvLlekgevteedlakelkidlnelrklLnrLyearlvky 59
                  + l+ d + e ge    d+a  l++ ++ + k+L rL + +l++ 
   CTQ27226.1 41 YVELISDLINEVGEARQVDMAARLGVSQPTVAKMLKRLASVGLIEQ 86
                 45566677888899999**************************985 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 8.3
                  TSEBHHHHHHHHTS-HH CS
  TFIIE_alpha  26 gevteedlakelkidln 42 
                    v+ee la  lk+ ++
   CTQ27226.1 135 HHVSEETLAMFLKFTQT 151
                  57899999999998765 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0004      0.21      11      43 ..      43      77 ..      33      78 .. 0.82
   2 ?   -2.3   0.0       7.4   3.9e+03      25      29 ..     124     128 ..     121     133 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0004
      HTH_38 11 eeIerlla.eG.lslreIArrLgrspsTIsRElkR 43
                e I +l++  G   + ++A rLg+s  T+++ lkR
  CTQ27226.1 43 ELISDLINeVGeARQVDMAARLGVSQPTVAKMLKR 77
                6677777525667889******************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.4
      HTH_38  25 eIArr 29 
                 eIArr
  CTQ27226.1 124 EIARR 128
                 45554 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00043      0.23      37      60 ..      57      80 ..      38      85 .. 0.78
   2 ?   -2.0   0.0       7.1   3.7e+03      49      58 ..     143     152 ..     133     155 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00043
                HHHHHHHTT--HHHHHHHH---S- CS
       HTH_6 37 ikalAkaaavSeativrfakkLGf 60
                  ++A+ ++vS++t+ ++ k L  
  CTQ27226.1 57 QVDMAARLGVSQPTVAKMLKRLAS 80
                558***************999865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 7.1
                 HHHHHHH--- CS
       HTH_6  49 ativrfakkL 58 
                 a+ ++f+++ 
  CTQ27226.1 143 AMFLKFTQTQ 152
                 4556666654 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00034      0.18      13      41 ..      55      83 ..      48      91 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00034
      HTH_29 13 stvsqiAkllglsrrtvyrwlkrfeegGl 41
                 +  ++A++lg+s +tv + lkr    Gl
  CTQ27226.1 55 ARQVDMAARLGVSQPTVAKMLKRLASVGL 83
                467899*****************999986 PP

>> KORA  TrfB plasmid transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00041      0.22      21      55 ..      42      78 ..      24      86 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00041
        KORA 21 veiargvL..Vegkkqadvatelgltkqavsqavkrv 55
                ve + +++  V + +q d+a++lg+++  v ++ kr 
  CTQ27226.1 42 VELISDLIneVGEARQVDMAARLGVSQPTVAKMLKRL 78
                555555554467889********************96 PP

>> HTH_47  winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1    0.0003      0.16      45      77 ..      53      85 ..      32      86 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0003
                EEEEHHHHHHHHT--HHHHHHHHHHHHHTT-EE CS
      HTH_47 45 GkrsLldiAeriglpfdrvaaiaraLaeaglla 77
                G+   +d+A r+g++  +va+++++La  gl++
  CTQ27226.1 53 GEARQVDMAARLGVSQPTVAKMLKRLASVGLIE 85
                566669*************************97 PP

>> DUF2089  Protein of unknown function (DUF2089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00064      0.34      32      75 ..      35      80 ..       8     115 .. 0.79
   2 ?   -0.9   0.0       3.1   1.6e+03      30      50 ..     100     120 ..      85     128 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00064
     DUF2089 32 arLskeqlefvelfikarGnlke..vekelgisYpTvrnrldeile 75
                 +L ++  e++  +i+  G+ ++  ++ +lg+s pTv + l+++++
  CTQ27226.1 35 RELIDDYVELISDLINEVGEARQvdMAARLGVSQPTVAKMLKRLAS 80
                46778899999999999999987225689**********9998764 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 3.1
     DUF2089  30 efarLskeqlefvelfikarG 50 
                 ++a+ s+e ++ ve f+ a G
  CTQ27226.1 100 KLAQESRERHQIVENFLLAIG 120
                 445556667777887776665 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00053      0.28      28      46 ..      59      77 ..      54      80 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00053
      HTH_10 28 eLAkelGIskstlsehLrk 46
                ++A +lG+s++t+ + L++
  CTQ27226.1 59 DMAARLGVSQPTVAKMLKR 77
                89***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1189.85
//
Query:       CTQ27227.1  [L=370]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-23   83.4  36.6    1.6e-23   83.4  36.6    1.7  2  CitMHS    Citrate transporter
  ------ inclusion threshold ------
        5.1    6.4  18.5      0.017   14.6   3.1    2.2  2  DUF373    Domain of unknown function (DUF373)


Domain annotation for each model (and alignments):
>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4  36.6   1.8e-27   1.6e-23       5     275 ..      21     304 ..      12     320 .. 0.75
   2 ?   -1.5   0.3      0.13   1.2e+03     118     162 ..     311     360 ..     303     367 .. 0.63

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 1.8e-27
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS   5 ileklrldvvallvlvll.vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrdllvllvlltallsafvsndgvvlimipiv 102
                 i ++l+              + + +  ++i++ +i++l g+m++ +++e +G fd l++k++r++ + r+l +++vl++a+ls f++nd+++ i++p++
  CTQ27227.1  21 IACVLSA----------IvPFVPASWPAAIDWHTIVTLSGLMLLTKGIELSGYFDVLGRKMARRFVTERQLAIFMVLAAAMLSTFLTNDVALFIVVPLT 109
                 2222222..........232234445667*************************************98889999************************* PP

                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 103 lslakrlkklppl.lliplalaaniggaltpiGtpttraaarpglslpnlll...................lalllvgllplvllfmfgvalalpvnap 181
                 l+l k    +p+  l+i  ala n+g++ltpiG+p            +n+ll                    a++l++l+ +++ f         ++  
  CTQ27227.1 110 LTLKKW-CAIPVNrLIIFEALAVNAGSLLTPIGNP------------QNILLwgrsglsffgfigqmlplaAAMMLTLLALCWFCF---------PAKR 186
                 ****97.666666699*******************............********9999999999997766444555554445554.........3222 PP

                 xxxxxxxxxxxxxxxxxxx..........................xxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 182 kvkkqkaiieaiarsllpv..........................atillla.........ykkveWsvlllfaGvfllvgaleqtGilealadllgag 245
                    + +++  +       +                          +++l+l+         + +v+Ws+ll f  +f+ v  l+q+  l+++ + +g  
  CTQ27227.1 187 LSYQSSDRAPS-------WqpklvwsclglyvvfltalemnqalwGLALVLLgflvlaravIVHVDWSLLLVFMVMFIDVHLLTQLPALHQVLSGVG-- 276
                 22233333333.......233333355555444444444444444222222355666677788***************************9999994.. PP

                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
      CitMHS 246 gplvalalvlglial.lsafisnvavaalma 275
                    ++   +l+l+a+ ls++isnv+ ++l++
  CTQ27227.1 277 ---TLSGGGLWLTAIgLSQVISNVPSTILLL 304
                 ...333677*****************97765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.13
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxx RF
      CitMHS 118 iplalaaniggaltpiGtpttraaarpglslpnlll.................lalllvgll 162
                 i+la a n+gg  ++ G               n+++                 +++ll+++l
  CTQ27227.1 311 ILLAWAVNVGGFGLLPGSL------------ANIIAlrmasdrriwwrfhlysIPMLLWAAL 360
                 4588899999977776666............7777666666666666666666666666555 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   3.1   1.9e-06     0.017     152     234 ..      13      95 ..       2     141 .. 0.72
   2 ?   -2.5   7.8       0.3   2.6e+03     170     256 ..     213     299 ..     156     366 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-06
      DUF373 152 elrktiLvplGlllliyalllllglpelalaiillllGlylllrGfgldelleelleklkesleegritfvtyvvalllllig 234
                 ++ +++L++  +l  i++++    ++++ + +i++l Gl+ll +G++l  +++ l +k+ + + ++r   +++v+a+++l   
  CTQ27227.1  13 RFLHLLLIIACVLSAIVPFVPASWPAAIDWHTIVTLSGLMLLTKGIELSGYFDVLGRKMARRFVTERQLAIFMVLAAAMLSTF 95 
                 45566777777777777777777777799**************************9988877777666666666665554433 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.3
      DUF373 170 lllllglpelalaiillllGlylllrGfgldelleelleklkesleegritfvtyvvallllligiisgyislesvssasvssgllt 256
                 +l+ l++ +  +++ l+llG+++l r++ ++  ++ ll  +  ++    +t + ++  +l+ +  +  g   l+++  ++v s++  
  CTQ27227.1 213 FLTALEMNQALWGLALVLLGFLVLARAVIVHVDWSLLLVFMVMFIDVHLLTQLPALHQVLSGVGTLSGGGLWLTAIGLSQVISNVPS 299
                 223366777888888888888888888877776666666655555555555555444444443333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2819.51
//
Query:       CTQ27228.1  [L=458]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.6e-116  389.4   1.1   1.8e-116  389.2   1.1    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1
     0.0016   17.9   0.0     0.0026   17.2   0.0    1.3  1  Cellulase      Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  389.2   1.1    2e-120  1.8e-116       2     452 ..       2     455 ..       1     456 [. 0.94

  Alignments for each domain:
  == domain 1  score: 389.2 bits;  conditional E-value: 2e-120
                    GGGS-TT-EEEEE--HHHHH--TTSTT---BHHHHHHHHGGGSTTS---SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTSTT---HHHH CS
  Glyco_hydro_1   2 ketfpedFlwgaataayqiEGawnedGkgesiwDtftetpgkvlegsngdvacdsYhrykeDvallkelgvkayrfSisWpRilPkGegeinekGl 97 
                    k+++p+dFlwg + ++ q EGawne+Gkg s++D   ++p + +  s   va+dsYhry+eD +l+++lg+++yrf i+W+R+ P+G+ge ne+G+
     CTQ27228.1   2 KNRLPADFLWGNSVSSMQTEGAWNEGGKGMSVYD--IRQPAEFA--SDWKVATDSYHRYREDFDLMQDLGMNCYRFQIAWSRVCPDGDGEFNEQGI 93 
                    6899******************************..67775544..4468********************************************** PP

                    HHHHHHHHHHHHTT-EEEEEEESS--BHHHHH.H-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHH.HHHHHTSS-STT-S-TTTHHHH CS
  Glyco_hydro_1  98 ayYerLidelleagieplvTlyHwdlPqaLqd.eGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvv.allgyltgefaPgkkdleaaye 191
                    a+Y++ idel ++giep++ lyH+d+P  L + + g+++r+++daf +y + +++ +gdkvk+wlTfnE+n+  +   +l + +  g+k l++ y 
     CTQ27228.1  94 AFYHQFIDELIARGIEPMICLYHFDMPLSLAErYNGFTDRRVMDAFIRYGQRMIACYGDKVKYWLTFNEQNLYhSPEAFLISGYLQGEKTLRELYL 189
                    ********************************9*************************************976155789***************** PP

                    HHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG..S----HHHHHHH.TT- CS
  Glyco_hydro_1 192 aaHnlllaharavklykevaqkgkigivlnlslaeplseseedkeaaeraleflngwfldpvvkGdYpeemkellrergalpeiteedkell.kgk 286
                    ++H++++ah +  +  ++++++  +g +l+ +l++p++ +++d+  a++ +efln+  l ++    Y+ e+++ +  +g  +  + ed++l+ +  
     CTQ27228.1 190 IQHHVMMAHVHLTHYLHQTKPQCLMGGMLAHALVYPATCKPRDILCAQQLDEFLNQNLLRAYAGEGYSPEVMHFVAAEGFDDIYRPEDLALMaTVR 285
                    ************************************************************9999889999999999999*************6678 PP

                    -SEEEEEEEEEEEEEE--...-STT---SSGGGGG-SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE----EE-BSSS.HHH--HHHHH CS
  Glyco_hydro_1 287 adflglnyYtsrlvknkeseeaslskteekkleeevdpslpktdigwiiepeglrkllellkkeYqklpiyiteNGlgakdeiee.gkveDdkRid 381
                    +d+l+++yY sr+ ++++ +   +  ++   + ++ +p l+ t+++w+i+p g+r+++++ ++++  lp++  eNG+g+ ++    + + Dd+Ri 
     CTQ27228.1 286 VDYLAFSYYASRTLNSDAIP-PGTAVNNYMLFGNQDNPFLKATEWNWQIDPLGFRTIITRYYNDWR-LPVFPIENGIGVIESWDGeHPIADDYRIA 379
                    9*************999944.4455566667788889****************************9.************999865699******** PP

                    HHHHHHHHHHHHH.HTT--EEEEEEE-SB----GGGTTSEE--SEEEET....TTTTEEEE-HHHHHHHHHHH-SS CS
  Glyco_hydro_1 382 Ylkehlnevkkai.edgvdlkgYvawsllDnfewaegyskrfGlvyvdr....netleRtpkkSakwykeviekng 452
                    Y+++h+n++k ai edg+++ gY+ w+l+D ++    ++kr+G+vyv+r     ++l+R pkkS+ w+k+v ++ng
     CTQ27228.1 380 YHRDHINAMKAAIfEDGAQVIGYLGWGLIDILSSQGDMRKRYGVVYVNRenhdLKDLRRVPKKSYAWLKQVFRSNG 455
                    *************************************************977767899**************9997 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.9e-07    0.0026      22      82 ..      55     114 ..      25     164 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.9e-07
                 SHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEE CS
   Cellulase  22 ttkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildi 82 
                    + +d+++d g+n+ R+ ++w + ++ + d++++e+ ++ ++++++  +++g+  ++ +
  CTQ27228.1  55 RYREDFDLMQDLGMNCYRFQIAWSRVCP-DGDGEFNEQGIAFYHQFIDELIARGIEPMICL 114
                 5678899********************5.66778*********************988855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3745.51
//
Query:       CTQ27229.1  [L=238]
Description: putative transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-29  102.6   0.0    3.2e-29  101.6   0.0    1.4  1  UTRA       UTRA domain
    6.6e-17   60.9   0.0    1.1e-16   60.3   0.0    1.3  1  GntR       Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
      0.017   15.1   0.0       0.03   14.3   0.0    1.3  1  TNF        TNF(Tumour Necrosis Factor) family
      0.027   14.2   0.4      0.066   12.9   0.1    1.8  2  HTH_41     Helix-turn-helix domain
      0.033   14.5   0.0      0.061   13.7   0.0    1.4  1  Rrf2       Transcriptional regulator
       0.17   11.9   0.0       0.38   10.7   0.0    1.5  1  HTH_Crp_2  Crp-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> UTRA  UTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   1.1e-32   3.2e-29       5     139 ..      96     229 ..      93     229 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 1.1e-32
                 SEEEEEEEEEEEE--HHHHHHHTS-TTSEEEEEEEEEEETTEEEEEEEEEEEGGGTTTCHHHHHHCS-HHHHHHHHHTTSEEEEEEEEEEEE--HHHHH CS
        UTRA   5 epktevlsleevpasaeiaeaLglpagepvlrieRlrladgepvaleesylpaslvpdlleedleegslyayleerlgvpitraeetiearladaeeae 103
                 e+++ev++++++ +s++++  L ++a++pv+ ++Rlrl++gepv+l+ + +p  lvp+l++ +l egs+++y++e lg+++  +   ++a  + + +++
  CTQ27229.1  96 EVQSEVVRFAVRFPSDKEQSSLLIDADAPVYDFVRLRLLNGEPVSLDLTVMPVGLVPGLTKSHL-EGSVFRYVQETLGLKLMGSYRVVRAMKPGELDKQ 193
                 689*************************************************************.********************************** PP

                 HHTSTTT-EEEEEEEEEEETTSCEEEEEEEEEETTT CS
        UTRA 104 lLgisagspvLviervtydadgrpveysrsyyrgdr 139
                 +L++++++pvL +e+v y++dg+p+ey++ +yr d+
  CTQ27229.1 194 HLHCEPTDPVLEVEQVIYLEDGTPLEYAHCHYRYDH 229
                 *********************************996 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   3.5e-20   1.1e-16       2      64 .]       5      67 ..       4      67 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 3.5e-20
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y q++++++ +I+s ++ + ++LP + +Laaef +sr+t+++A+r+L  egl+  r+g+GtfV
  CTQ27229.1  5 YLQIAREIKKRIISQQYPASAPLPDQFALAAEFSTSRMTIQQAMRQLIVEGLIYTRKGQGTFV 67
                89************************************************************9 PP

>> TNF  TNF(Tumour Necrosis Factor) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     1e-05      0.03      61     125 ..      24      88 ..       6      89 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1e-05
                 STSSEEEEEEEEEEECCSSSCSEEEEEEEEEEEEEE-TTEEEEEEESCGGGBEESETTTSEEEEE CS
         TNF  61 sypkkelLlkaaesscssedseywlqsiylgglfeLkagdrvsvnvsnpslvdlseegktfFGaf 125
                 s p +++++ aae+s+s+ + ++ ++++ + gl++ ++g+  +v+ + ++l +++ +g+ +FGa 
  CTQ27229.1  24 SAPLPDQFALAAEFSTSRMTIQQAMRQLIVEGLIYTRKGQGTFVRKNFLQLSQWELPGSDYFGAT 88 
                 33678888999999999999999****************************************95 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   2.2e-05     0.066      12      47 ..      33      66 ..      31      67 .. 0.89
   2 ?   -3.0   0.0       2.1   6.2e+03      30      39 ..     204     213 ..     203     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.2e-05
      HTH_41 12 lakeleLSvGlvQkALklLeddkaislerrGrlGtf 47
                la e++ S+ ++Q+A+  L  ++ i++ r+G  Gtf
  CTQ27229.1 33 LAAEFSTSRMTIQQAMRQLIVEGLIYT-RKGQ-GTF 66
                789**********************97.7885.777 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.1
      HTH_41  30 Leddkaisle 39 
                 Le +++i+le
  CTQ27229.1 204 LEVEQVIYLE 213
                 88999**997 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     2e-05     0.061      30      62 ..      32      64 ..      24      70 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2e-05
                HHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT- CS
        Rrf2 30 eiaerqnispsylekilakLrkaglvksvrGkg 62
                ++a+++++s+  +++ +++L  +gl+ +++G+g
  CTQ27229.1 32 ALAAEFSTSRMTIQQAMRQLIVEGLIYTRKGQG 64
                589****************************94 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00013      0.38      27      54 ..      33      61 ..      25      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
                HHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2 27 lAsmlGltretvsrilseLkreglis.rg 54
                lA+   ++r t+ +++++L  egli  r+
  CTQ27229.1 33 LAAEFSTSRMTIQQAMRQLIVEGLIYtRK 61
                89999********************9532 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 2103.03
//
Query:       CTQ27230.1  [L=329]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-24   86.6   0.3    3.2e-24   85.4   0.3    1.7  1  Ldt_C     L,D-transpeptidase C-terminal domain
      5e-17   62.7   0.0      9e-17   61.8   0.0    1.4  1  YkuD      L,D-transpeptidase catalytic domain


Domain annotation for each model (and alignments):
>> Ldt_C  L,D-transpeptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.3   3.6e-28   3.2e-24       1      66 [.     260     327 ..     260     328 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 3.6e-28
       Ldt_C   1 PvKvsvEPdgsryvEvHqPLSrseed..dpqtvpltlskelkkfledaevdkakvkaalerrsGmPve 66 
                 PvK+++EPdgsry+EvH+PLS++e++   ++ vp+tl++ +++++++++vd+++v++a+++rsGmPv+
  CTQ27230.1 260 PVKATTEPDGSRYIEVHNPLSTTEAQfqGGEIVPITLTQPVQAVTSQSDVDQNVVEQAIQNRSGMPVR 327
                 9*************************9999*************************************7 PP

>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0     1e-20     9e-17       4     144 ..     124     254 ..     121     261 .. 0.76

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 1e-20
                 EEEETTTTEEEEEEETTE.EEEEEE-BEBTTS.TTSE--.-EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTT.......CECCCCEE CS
        YkuD   4 ivvdlaeqrllvlyengk.lvlsfpvsvGgkkegdreTP.lGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskv.......algkvkfv 93 
                 i+++ ae+rl ++y +g+ +v   p+ +G   + ++ TP + t ++ +k + ptw+++ + + +++   ++            +       ++    ++
  CTQ27230.1 124 IIINSAEMRL-YYYPKGTnTVIVLPIGIG---QLGKDTPiNWTTKVERKKAGPTWTPTAKMHAEYAAAGNP-L----------PavvpagpDNPMGLYA 207
                 9******999.5556666378********...4466666368999*********98766654444333332.2..........1223444467889999 PP

                 E-STTS-EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEE CS
        YkuD  94 fpngsgiyiHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpv 144
                  + g+ ++iHgt+a+       g r ShGC+rl+++d+k l+e+v+vgt+v
  CTQ27230.1 208 LYIGRLYAIHGTNANFGI----GLRVSHGCVRLRNDDIKFLFENVPVGTRV 254
                 **********88888444....4589***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2851.07
//
Query:       CTQ27231.1  [L=261]
Description: Anaerobic C4-dicarboxylate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-56  191.9   0.0    1.8e-56  191.7   0.0    1.0  1  Y_phosphatase3  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.7   0.0   9.9e-61   1.8e-56       2     232 .]      13     260 ..      12     260 .. 0.90

  Alignments for each domain:
  == domain 1  score: 191.7 bits;  conditional E-value: 9.9e-61
  Y_phosphatase3   2 plegvsNfRDlGgyptadgrkvrpgvlyRsaelsklteadlakLadlgirtviDLRspeEreaeap...legaryvhlpv.........e..eaa 82 
                     +l+g  NfRDlGg  +adgr+vr+g+l+Rs++l++lt++dl++L++l +++v+D+R+p E+++  p    + ++y ++p          +  e++
      CTQ27231.1  13 SLQGGINFRDLGGQLAADGRRVRSGKLLRSGALNRLTAEDLNHLDTLPLSRVLDYRDPGEVAR-TPdklSPLTHYLNAPAnppvsevnaKvtELN 106
                     799*********************************************************888.5544333337888887888888876243569 PP

  Y_phosphatase3  83 eeekeeeeaeetlaelYrellesakkayrkvfealad.ee.pvlfHCtaGKDRTGvlaalllsllGvdeedivaDYlltneyleelrerlkakle 175
                     +++ ++ ++e+++ +lYr+l+ + ++ayr++   l +  e ++l HC+ GKDRTGv++al l ++G+d e+++++Yllt+ +l+++ + + + l 
      CTQ27231.1 107 AATLNALNGEQFMLQLYRQLPFN-NPAYRQLAAWLTTpFEgALLQHCAVGKDRTGVGCALTLFAVGCDSETVMEEYLLTHGMLTQVEAWMLELLG 200
                     9999******************7.8************7336*******************************************99999988888 PP

  Y_phosphatase3 176 eellaea...leellsvrpeyleaaldaieekygsvegYlreelglseeeiealrerlle 232
                     ++l+a+    l+++l+v+++yl+aal+ai+++yg+v+++l +e++l++  ++al++rlle
      CTQ27231.1 201 NDLTAQGrqsLADILTVKESYLAAALSAIHQRYGTVDAWLAAEYQLTAPVRAALQARLLE 260
                     8855555678************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2289.49
//
Query:       CTQ27232.1  [L=530]
Description: putative transporter fused subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-47  160.5   0.0    2.4e-24   86.4   0.0    2.6  2  ABC_tran       ABC transporter
    3.4e-24   84.7   2.2    3.9e-21   74.9   1.6    2.4  2  ABC_tran_Xtn   ABC transporter
    2.9e-11   43.7  15.1    0.00072   19.5   0.1    4.7  5  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
      3e-07   30.1  10.6       0.06   12.8   0.9    4.3  3  SMC_N          RecF/RecN/SMC N terminal domain
    4.4e-07   29.5   0.8      0.029   14.1   0.0    2.4  2  AAA_29         P-loop containing region of AAA domain
    4.2e-06   26.8   0.5     0.0052   16.7   0.0    2.6  2  RsgA_GTPase    RsgA GTPase
    2.9e-05   24.4   0.0       0.15   12.4   0.0    2.6  2  RNA_helicase   RNA helicase
    3.1e-05   24.0   0.0      0.037   14.1   0.0    2.7  2  MMR_HSR1       50S ribosome-binding GTPase
    0.00014   22.4   0.0      0.097   13.2   0.0    2.8  2  AAA_18         AAA domain
    0.00015   21.9   4.3       0.11   12.6   0.1    3.7  4  DUF87          Helicase HerA, central domain
    0.00016   21.4   0.6       0.31   10.7   0.1    2.7  2  AAA_24         AAA domain
    0.00023   20.3   2.6      0.022   13.8   0.0    2.7  3  MeaB           Methylmalonyl Co-A mutase-associated GTPase Me
    0.00026   21.0   0.0       0.14   12.2   0.0    3.5  3  AAA_14         AAA domain
    0.00075   19.8   0.0       0.42   10.9   0.0    2.7  2  AAA_28         AAA domain
      0.002   17.5   1.2       0.27   10.6   0.0    2.4  2  FtsK_SpoIIIE   FtsK/SpoIIIE family
     0.0026   17.9   0.2        3.5    7.8   0.0    2.8  3  AAA_33         AAA domain
     0.0034   17.2   0.1        0.4   10.5   0.0    2.4  2  MukB           MukB N-terminal
     0.0047   16.9   3.1       0.36   10.7   0.3    2.7  2  NACHT          NACHT domain
     0.0075   16.5   3.5       0.55   10.5   0.3    3.6  3  AAA_22         AAA domain
     0.0092   16.4   0.0       0.53   10.6   0.0    2.7  2  AAA_16         AAA ATPase domain
  ------ inclusion threshold ------
      0.014   15.6   0.2         12    6.2   0.0    3.3  2  SbcCD_C        Putative exonuclease SbcCD, C subunit
      0.022   14.5   0.1        3.1    7.5   0.0    2.7  2  AAA_30         AAA domain
      0.023   13.9   3.3      0.029   13.6   0.1    2.2  2  NB-ARC         NB-ARC domain
      0.025   14.1   0.9       0.25   10.9   0.0    2.2  2  AAA_7          P-loop containing dynein motor region
      0.027   14.9   0.2        6.4    7.2   0.1    3.3  2  AAA            ATPase family associated with various cellular
       0.05   13.4   0.3        5.4    6.7   0.0    2.5  2  ATP_bind_1     Conserved hypothetical ATP binding protein
      0.084   12.9   1.8          2    8.5   0.0    2.7  2  Dynamin_N      Dynamin family
      0.085   13.1   2.6       0.56   10.4   0.1    2.8  2  Roc            Ras of Complex, Roc, domain of DAPkinase
        0.1   12.7   3.7       0.21   11.7   3.7    1.4  1  BRE1           BRE1 E3 ubiquitin ligase
       0.11   12.2   0.1        8.7    6.0   0.0    3.0  3  VirE           Virulence-associated protein E
       0.13   11.5   0.1        2.9    7.1   0.0    2.3  2  Septin         Septin
       0.15   11.8   0.9         10    5.9   0.0    2.7  2  CLP1_P         mRNA cleavage and polyadenylation factor CLP1 
       0.21   12.0   1.3        7.6    7.0   0.1    2.8  2  AAA_17         AAA domain
       0.21   11.3  12.0       0.27   10.9   0.8    3.3  3  AAA_15         AAA ATPase domain
       0.34    9.8   2.1        1.6    7.6   0.1    2.3  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
        0.4   11.1  14.1       0.71   10.3   0.7    3.2  3  AAA_23         AAA domain
       0.42   10.2   1.5        6.1    6.4   0.0    2.8  3  AAA_25         AAA domain
       0.92    9.5   3.2         60    3.6   0.1    3.7  4  AAA_5          AAA domain (dynein-related subfamily)
        1.5    8.7   5.9       0.81    9.6   0.1    3.1  2  NTPase_1       NTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0   2.2e-22     1e-19       2     137 .]      18     184 ..      17     184 .. 0.80
   2 !   86.4   0.0   5.2e-27   2.4e-24       2     137 .]     336     467 ..     335     467 .. 0.90

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 2.2e-22
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..................... 79 
                 +n+s+k+  g++++++G nG+GKSt++k+l g l+pt G++ ld            +++ig l q+++ f+  tv ++                     
  CTQ27232.1  18 ENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLD-----------PNERIGKLRQDQFAFEAFTVLDTvimghgelwevkqerdriyal 105
                 79***************************************666...........8899999****999999999999999*****9998777777777 PP

                 ........................HHHTCHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ........................xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ........................esdeeiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                                          +++++ ++l  +g++    +   ++p s++  G+k rv la+al+++p++lllDEpt+
  CTQ27232.1 106 aemseedgykvadlevkygemdgySAEARAGELLLGVGIPV---EQH-YGPmSEVAPGWKLRVLLAQALFSNPDILLLDEPTN 184
                 76666555555555555555555444455555555555554...332.3334******************************8 PP

  == domain 2  score: 86.4 bits;  conditional E-value: 5.2e-27
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS..--S-TTSBHHHH.....HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx.....xxxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe..pqlfpeltvren.....esdeeiekalsklg 93 
                 knv+l l+ gek+ai+G nG GKSt+lk+l g+l+p++G++           + s +++ig++ q+   ++ ++ltv e      ++ ++ ++++s lg
  CTQ27232.1 336 KNVNLLLEVGEKIAILGANGVGKSTMLKTLVGELQPDNGSV-----------KWSENAQIGYYAQDheYEFENDLTVFEWmsqwkQEGDDEQAVRSILG 423
                 8****************************************...........5678999******9888899999999998877655555778888888 PP

                 TGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                    + ++ +k+ ++ LSgG+k r+   +++++kp++l++DEpt+
  CTQ27232.1 424 RLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILVMDEPTN 467
                 8889999999999******************************8 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   1.6   8.5e-24   3.9e-21       2      85 .]     224     309 ..     223     309 .. 0.95
   2 !    8.1   0.0    0.0058       2.6       2      22 ..     507     527 ..     506     530 .] 0.87

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 8.5e-24
  ABC_tran_Xtn   2 elengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLekl..ekiekpeekkpklrf 85 
                   +l++g+l+ Y+GnY+ey+    +++e+  ++++k++++i++l++f+ rf+a+a+k++qa sr ++++k+  e+++++++++p +rf
    CTQ27232.1 224 DLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIADLQSFVSRFSANASKSRQATSRARQIDKIklEEVKASSRQNPFIRF 309
                   89*******************************************************************88888888888888876 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0058
  ABC_tran_Xtn   2 elengklteYkGnYseyleek 22 
                   e++  ++ +++GnY++yl+ k
    CTQ27232.1 507 EITPDRVIDFSGNYEDYLRSK 527
                   78888999**********998 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   1.6e-06   0.00072       3      48 ..      31      64 ..      30      87 .. 0.68
   2 !   13.9   0.5   7.9e-05     0.036     244     303 .]     164     216 ..     161     216 .. 0.78
   3 ?   -1.5   0.1       3.9   1.8e+03     129     196 ..     254     321 ..     224     343 .. 0.51
   4 !   10.4   0.2   0.00087       0.4       3      20 ..     349     366 ..     347     403 .. 0.80
   5 !    7.8   0.0    0.0054       2.5     257     301 ..     456     497 ..     439     499 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.6e-06
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipsl 48
                +liG+NgsGKS+++++l            ++d ++  g+ + +p++
  CTQ27232.1 31 GLIGANGSGKSTFMKIL------------GGDLEPTLGNVSLDPNE 64
                69***************............34444444444444444 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 7.9e-05
      AAA_21 244 llalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                 +  l+ al++ +   ++ll+DEp n+L+   +r l + l++   +++  i+ +H+ ++l+
  CTQ27232.1 164 V-LLAQALFSNP---DILLLDEPTNNLDIDTIRWLEQTLND---RDSTMIIISHDRHFLN 216
                 4.5666677666...9*************999999888833...4678999999988775 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.9
      AAA_21 129 elsvsepndlqfgkaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrslklve 196
                    ++++++ +  ++  ++++ a+++++     r  ++  l+ +++   +++ +r+ q+    ++  e
  CTQ27232.1 254 DNAKKKAQIADLQSFVSRFSANASKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALE 321
                 33333333333344444444444444444433333355555555555555555555555555555444 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00087
      AAA_21   3 vliGpNgsGKSnLLdald 20 
                 ++ G+Ng+GKS+ L++l 
  CTQ27232.1 349 AILGANGVGKSTMLKTLV 366
                 799*************93 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.0054
      AAA_21 257 kgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpll 301
                 k+ +l+ DEp n+L+ + +++l   l+  +     +i+++H+ ++
  CTQ27232.1 456 KPNILVMDEPTNHLDMESIESLNMALEMYQG---TLIFVSHDREF 497
                 5589************999999877766655...99999998665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.6    0.0044         2      28      42 ..      31      45 ..      14      48 .. 0.83
   2 !    7.4   0.1    0.0058       2.7     147     204 ..     162     217 ..     160     225 .. 0.88
   3 !   12.8   0.9   0.00013      0.06      76     212 ..     381     509 ..     335     514 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0044
                EEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxx RF
       SMC_N 28 aivGpNGSGKsnlld 42
                 ++G+NGSGKs ++ 
  CTQ27232.1 31 GLIGANGSGKSTFMK 45
                589********9985 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0058
                 HHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 147 laLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204
                 l +l+A   ++   + llDe   +LD   ++ + + l+ +   + +i+is+++++l+ 
  CTQ27232.1 162 LRVLLAQALFSNPDILLLDEPTNNLDIDTIRWLEQTLNDRD--STMIIISHDRHFLNM 217
                 5677888888888899**********************998..999******998875 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 0.00013
                 EEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-ST..TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  76 kaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsellesagisk..elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLD 172
                 +a++  + ++++ +++ + + ++ + + k++g+     +++ v++   + l+++ +i+k  ++LSgGek      +lf   ++++  + ++De   +LD
  CTQ27232.1 381 NAQIGYYAQDHEYEFENDLTVFEWMSQWKQEGD-----DEQAVRSILGRLLFSQDDIKKpaKVLSGGEKG----RMLFGKLMMQKPNILVMDEPTNHLD 470
                 444444433333333333444444444444444.....4444444444455666667653369*****97....8999999999999************ PP

                 HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-.SCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
       SMC_N 173 eknvkkvaellkeksknaQfivislreemleka.dklvgvt 212
                  + ++ +   l+  +    +i +s+++e+++    +++ +t
  CTQ27232.1 471 MESIESLNMALEMYQ--GTLIFVSHDREFVSSLaTRVLEIT 509
                 *******99999888..778999999988875426666655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.3   0.00011     0.052      23      39 ..      27      44 ..      16      46 .. 0.74
   2 !   14.1   0.0   6.2e-05     0.029      15      42 ..     338     365 ..     333     383 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00011
      AAA_29 23 g.atlltGpsGsGKSTll 39
                g  + l+G++GsGKST++
  CTQ27232.1 27 GnRYGLIGANGSGKSTFM 44
                246779**********97 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 6.2e-05
      AAA_29  15 htieidlkgatlltGpsGsGKSTllDAi 42 
                   + +++ + + + G++G+GKST+l  +
  CTQ27232.1 338 VNLLLEVGEKIAILGANGVGKSTMLKTL 365
                 555566666899************9655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0072       3.3     100     132 ..      28      60 ..       6      68 .. 0.83
   2 !   16.7   0.0   1.1e-05    0.0052      77     131 ..     322     377 ..     289     387 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0072
                  SEEEEECSTTSSHHHHHHHHCTT-----S---- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevse 132
                  +   l+G  G GKSt+++ l ++le   g+vs 
   CTQ27232.1  28 NRYGLIGANGSGKSTFMKILGGDLEPTLGNVSL 60 
                  55679*****************99999999985 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.1e-05
                  SEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  77 yevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  +e l+   +++  +++++ ll+  + ++++G  GvGKSt++++l++el+   g+v+
   CTQ27232.1 322 VEALTKGFDEGPLFKNVNLLLEVgEKIAILGANGVGKSTMLKTLVGELQPDNGSVK 377
                  55555555555566666666766578899*****************9988777775 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0034       1.5       3      26 ..      32      55 ..      31     102 .. 0.83
   2 !   12.4   0.0   0.00033      0.15       2      63 ..     349     410 ..     348     425 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0034
  RNA_helicase  3 lyGpsgeGKStlakeLakallkkl 26
                  l G++g GKSt++k L  +l+ +l
    CTQ27232.1 32 LIGANGSGKSTFMKILGGDLEPTL 55
                  679************999998555 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00033
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl.klkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkd 63 
                    + G++g+GKSt+ k+L+ +l+ +    k++++  ++  ++d+ + ++ ++ +v++ ++q+k+
    CTQ27232.1 349 AILGANGVGKSTMLKTLVGELQPDNgSVKWSENAQIGYYAQDHEYEFE-NDLTVFEWMSQWKQ 410
                   689***************999943324444444444555555544444.45555555555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.012       5.6       2      22 ..      30      50 ..      29     124 .. 0.71
   2 !   14.1   0.0     8e-05     0.037       1      22 [.     347     368 ..     347     390 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.012
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                 +++G   +GKSt+++ l g+
  CTQ27232.1 30 YGLIGANGSGKSTFMKILGGD 50
                589************999876 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 8e-05
                 EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge 22 
                 ++ai+G   vGKSt++++l+ge
  CTQ27232.1 347 KIAILGANGVGKSTMLKTLVGE 368
                 69******************96 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.024        11       3      18 ..      32      47 ..      31     101 .. 0.84
   2 !   13.2   0.0   0.00021     0.097       1      62 [.     348     403 ..     348     496 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.024
      AAA_18  3 ltGtpGvGKttlakeL 18
                l G+ G+GK+t+ k L
  CTQ27232.1 32 LIGANGSGKSTFMKIL 47
                78***********999 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00021
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.........gvnlrdvakenglllevdpealdeskrldedkldklld 62 
                 I++ G+ GvGK+t+ k L  +l+            +++ +a+++++++e+d                 +++
  CTQ27232.1 348 IAILGANGVGKSTMLKTLVGELQPdngsvkwseNAQIGYYAQDHEYEFENDLT---------------VFE 403
                 89****************55542222434444433344444444443333333...............222 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.015       6.8      26      43 ..      30      47 ..      26      73 .. 0.85
   2 ?   -2.3   0.1       8.3   3.8e+03     167     178 ..     264     275 ..     232     321 .. 0.48
   3 !   12.6   0.1   0.00023      0.11      23      48 ..     345     370 ..     336     376 .. 0.85
   4 ?    1.8   0.0      0.48   2.2e+02     151     214 ..     440     522 ..     396     526 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.015
       DUF87 26 lAilgsTGsGKSntvavL 43
                 + +g  GsGKS+++++L
  CTQ27232.1 30 YGLIGANGSGKSTFMKIL 47
                5789999*********98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 8.3
       DUF87 167 rlldkledllrk 178
                  l++ ++++  +
  CTQ27232.1 264 DLQSFVSRFSAN 275
                 222222222222 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 0.00023
       DUF87  23 trHlAilgsTGsGKSntvavLleell 48 
                  + +Ailg  G+GKS+  + L+ el 
  CTQ27232.1 345 GEKIAILGANGVGKSTMLKTLVGELQ 370
                 6789******************9986 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.48
       DUF87 151 k....................kekeelrklknqaiarlldkledllrkggsfsnsstdliallleklekegkitiidlsgvdel 214
                                       ++e+ ++l++++i++l+++le  + + ++  + + +++++l     +  +  +id+sg  e+
  CTQ27232.1 440 SggekgrmlfgklmmqkpnilVMDEPTNHLDMESIESLNMALEMYQGTLIFV-SHDREFVSSLATRVLEITPDRVIDFSGNYED 522
                 35555555555555555555568889999**************999999999.8888888888888888888888899997765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0044         2       3      22 ..      28      47 ..      27      62 .. 0.86
   2 !   10.7   0.1   0.00067      0.31       3      22 ..     346     365 ..     344     377 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0044
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                +++ ++G +g+GK+t++k l
  CTQ27232.1 28 NRYGLIGANGSGKSTFMKIL 47
                57889************987 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00067
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                  ki+i G +g+GK+t++k+l
  CTQ27232.1 346 EKIAILGANGVGKSTMLKTL 365
                 59****************99 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.7e-05     0.022      14      53 ..      12      51 ..       1      64 [. 0.85
   2 ?   -1.9   0.2       2.8   1.3e+03     204     249 ..     248     293 ..     236     303 .. 0.74
   3 ?    5.7   0.0     0.014       6.3      30      54 ..     346     370 ..     333     376 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.7e-05
                HHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB 14 eakellerllakaGraqvvGltGvPGaGkstlvealglel 53
                 +k l+e+++ k G  ++ Gl G  G+Gkst+++ lg  l
  CTQ27232.1 12 GSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDL 51
                6899*****************************9998776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.8
                 --EEEEEBCCCTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH CS
        MeaB 204 rpkvlktsavegeGidelvdaieehrevlkktGllekrrrerakee 249
                 r ++l   a+++  i++l + ++++   ++k+ + + r r+ +k +
  CTQ27232.1 248 RERLLADNAKKKAQIADLQSFVSRFSANASKSRQATSRARQIDKIK 293
                 5567777888889999999999999999888877777766655544 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.014
                 EEEEEEE-TTSSHHHHHHHHHHHHH CS
        MeaB  30 qvvGltGvPGaGkstlvealglelr 54 
                 +++ + G  G+Gkst+++ l+ el+
  CTQ27232.1 346 EKIAILGANGVGKSTMLKTLVGELQ 370
                 578899************9998886 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.16        73       6      27 ..      31      52 ..      27      93 .. 0.74
   2 ?    0.6   0.0       1.2   5.4e+02      64     131 .]     173     241 ..     157     241 .. 0.67
   3 !   12.2   0.0    0.0003      0.14       5      47 ..     348     398 ..     345     422 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.16
      AAA_14  6 vitGaRrvGKTtllkqlikell 27
                 + Ga  +GK+t++k l  +l 
  CTQ27232.1 31 GLIGANGSGKSTFMKILGGDLE 52
                589***********98876655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.2
      AAA_14  64 kktylflDEiqev..pewekalkslvdegknldvivtGSnskllskeiatslag.rvaeielyplsfaEfl 131
                 +  +l+lDE  +    +  ++l + ++++ +  +i+  S+  + ++ + t++a+  + e+++yp ++ E++
  CTQ27232.1 173 NPDILLLDEPTNNldIDTIRWLEQTLNDR-DSTMIII-SHDRHFLNMVCTHMADlDYGELRVYPGNYDEYM 241
                 67789999988773355667899999888.4344444.555555566666666636789999999999985 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.0003
      AAA_14   5 lvitGaRrvGKTtllkqlikell........vkkesilyinldderdkkla 47 
                 ++i Ga  vGK+t+lk+l+ el          ++ +i y++ d+e + +++
  CTQ27232.1 348 IAILGANGVGKSTMLKTLVGELQpdngsvkwSENAQIGYYAQDHEYEFEND 398
                 6899***************99998888888777888888888877665543 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.029        13       4      20 ..      32      48 ..      29      64 .. 0.87
   2 !   10.9   0.0    0.0009      0.42       1      20 [.     347     366 ..     347     410 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.029
      AAA_28  4 itGgestGKTtlleaLa 20
                ++G+ ++GK+t ++ L 
  CTQ27232.1 32 LIGANGSGKSTFMKILG 48
                89**********99885 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0009
      AAA_28   1 kivitGgestGKTtlleaLa 20 
                 ki+i+G+ + GK+t+l+ L 
  CTQ27232.1 347 KIAILGANGVGKSTMLKTLV 366
                 79**************9996 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.3     0.025        12      45      57 ..      33      45 ..      20      47 .. 0.90
   2 !   10.6   0.0   0.00058      0.27      41      60 ..     347     366 ..     330     371 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.025
                  E--TTSSHHHHHH CS
  FtsK_SpoIIIE 45 aGatgsGKStaln 57
                  +Ga gsGKSt+++
    CTQ27232.1 33 IGANGSGKSTFMK 45
                  8*********987 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00058
                   SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  41 hllvaGatgsGKStalntLi 60 
                    + ++Ga g GKSt+l+tL+
    CTQ27232.1 347 KIAILGANGVGKSTMLKTLV 366
                   689***************97 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0076       3.5       4      19 ..      32      47 ..      31     109 .. 0.84
   2 ?   -2.1   0.1       8.5   3.9e+03     106     120 ..     247     261 ..     192     291 .. 0.60
   3 ?    7.1   0.0     0.012       5.5       4      24 ..     350     370 ..     348     393 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0076
      AAA_33  4 lvGlpGsGKstlaerl 19
                l+G++GsGKst+ + l
  CTQ27232.1 32 LIGANGSGKSTFMKIL 47
                68**********9866 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 8.5
      AAA_33 106 tdeetlkeRlakRaa 120
                 + e++l+++ +k+a+
  CTQ27232.1 247 ARERLLADNAKKKAQ 261
                 223333333333333 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.012
      AAA_33   4 lvGlpGsGKstlaerllkklg 24 
                 + G++G+GKst ++ l+ +l+
  CTQ27232.1 350 ILGANGVGKSTMLKTLVGELQ 370
                 679*************98876 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1      0.08        37      31      46 ..      32      47 ..      29      61 .. 0.81
   2 !   10.5   0.0   0.00086       0.4      30      66 ..     349     385 ..     341     392 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.08
                HHS--SHHHHHHHHHH CS
        MukB 31 lsGgnGaGksttmaaf 46
                l G+nG+Gkst m  +
  CTQ27232.1 32 LIGANGSGKSTFMKIL 47
                78**********9765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00086
                 HHHS--SHHHHHHHHHHHHHHS--TTT---------- CS
        MukB  30 tlsGgnGaGksttmaafvtaliPdlsllhfrntteaG 66 
                 ++ G+nG Gkst++ ++v  l Pd   +++ + ++ G
  CTQ27232.1 349 AILGANGVGKSTMLKTLVGELQPDNGSVKWSENAQIG 385
                 567*********************9999887766655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.2     0.024        11       5      19 ..      32      46 ..      29      52 .. 0.87
   2 !   10.7   0.3   0.00078      0.36       3      25 ..     348     370 ..     346     441 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.024
                EEC-TTTCHHHHHHH CS
       NACHT  5 lqGeaGsGKTtLlqk 19
                l G++GsGK+t+++ 
  CTQ27232.1 32 LIGANGSGKSTFMKI 46
                68**********985 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00078
                 EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawa 25 
                 +++ G++G+GK+t+l+ l+ +++
  CTQ27232.1 348 IAILGANGVGKSTMLKTLVGELQ 370
                 789***************98887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1      0.12        55      10      25 ..      32      47 ..      28      59 .. 0.88
   2 ?   -1.0   0.0       4.1   1.9e+03      88     126 ..     167     206 ..     142     217 .. 0.71
   3 !   10.5   0.3    0.0012      0.55       8      32 ..     348     372 ..     345     497 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.12
      AAA_22 10 vtGesGtGKTtllrrl 25
                ++G  G+GK+t ++ l
  CTQ27232.1 32 LIGANGSGKSTFMKIL 47
                79*********99866 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 4.1
      AAA_22  88 arav...ielliiDEaqh.lrseealeeLrsllnlsrkgvqli 126
                 a+a    + +l++DE  + l   + +++L + ln  + + ++i
  CTQ27232.1 167 AQALfsnPDILLLDEPTNnL-DIDTIRWLEQTLN--DRDSTMI 206
                 44444456689999988888.7888888877777..4333333 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.0012
      AAA_22   8 lvvtGesGtGKTtllrrlleqldee 32 
                 +++ G  G+GK+t l++l+ +l+ +
  CTQ27232.1 348 IAILGANGVGKSTMLKTLVGELQPD 372
                 6899***************999644 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.34   1.5e+02      28      42 ..      31      45 ..      17     134 .. 0.88
   2 !   10.6   0.0    0.0012      0.53      27      52 ..     348     383 ..     341     477 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.34
      AAA_16 28 llsGesGvGKsslvr 42
                 l+G+ G+GKs+ ++
  CTQ27232.1 31 GLIGANGSGKSTFMK 45
                589********9875 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0012
      AAA_16  27 vllsGesGvGKsslvrellralekd..........g 52 
                 + + G+ GvGKs+++++l  +l+ d           
  CTQ27232.1 348 IAILGANGVGKSTMLKTLVGELQPDngsvkwsenaQ 383
                 6799**************999999944333333332 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.091        42      62      84 ..     172     194 ..     162     200 .. 0.81
   2 ?    6.2   0.0     0.026        12      62      86 ..     455     479 ..     425     483 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.091
     SbcCD_C  62 palrlvfLDEAFsklDeesiatl 84 
                 +++++++LDE  ++lD ++i+ l
  CTQ27232.1 172 SNPDILLLDEPTNNLDIDTIRWL 194
                 5789************9998865 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.026
     SbcCD_C  62 palrlvfLDEAFsklDeesiatlle 86 
                 +++ ++++DE  + lD esi++l  
  CTQ27232.1 455 QKPNILVMDEPTNHLDMESIESLNM 479
                 4688999**********99998765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.073        34      23      38 ..      32      47 ..      24      99 .. 0.87
   2 ?    7.5   0.0    0.0067       3.1      22      49 ..     349     376 ..     338     496 .. 0.62

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.073
      AAA_30 23 ltGpAGtGKttalkal 38
                l G+ G+GK+t +k l
  CTQ27232.1 32 LIGANGSGKSTFMKIL 47
                7899*********976 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0067
      AAA_30  22 vltGpAGtGKttalkalreaweaaggrv 49 
                 ++ G+ G GK+t+lk+l+  ++ ++g+v
  CTQ27232.1 349 AILGANGVGKSTMLKTLVGELQPDNGSV 376
                 6789************987777665444 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.6      0.84   3.9e+02      24      38 ..      31      45 ..      26      51 .. 0.89
   2 ?   13.6   0.1   6.3e-05     0.029      23     121 ..     348     474 ..     336     507 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.84
                EEEESTTSSHHHHHH CS
      NB-ARC 24 alvGmgGvGKttlak 38
                +l G  G+GK+t +k
  CTQ27232.1 31 GLIGANGSGKSTFMK 45
                689*********986 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6.3e-05
                 EEEEESTTSSHHHHHHHHCCSHCCCCC..CBTEEEEE......................EEESXXHHHHHHHXXHHHHHCCCTTSSSS-STTS...HHH CS
      NB-ARC  23 valvGmgGvGKttlakqilnksdeveg..rFdsvawv......................vvsktdkseeiletilkeLslseddleekeeves...lkr 94 
                 +a+ G  GvGK+t++k  + +++  +g  ++   a++                      +  ++ + e+ +++il +L  s+dd+++ ++v s   + r
  CTQ27232.1 348 IAILGANGVGKSTMLKTLVGELQPDNGsvKWSENAQIgyyaqdheyefendltvfewmsQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSggeKGR 446
                 89*****************996555554455566666*******************66656667788999999****************9999998888 PP

                 HHH.HHCCCTTEEEEEEEE-SHHHH... CS
      NB-ARC  95 klv.rlLltkrfllvlDDVweeedwdki 121
                 +l+ +l+ +k  +lv+D   ++ d+++i
  CTQ27232.1 447 MLFgKLMMQKPNILVMDEPTNHLDMESI 474
                 887578889999*****87666665555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.51   2.3e+02      38      53 ..      32      47 ..      25      57 .. 0.83
   2 ?   10.9   0.0   0.00054      0.25      26      61 ..     338     373 ..     335     382 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.51
       AAA_7 38 lvGptGtGKtviikdl 53
                l+G  G+GK++ +k l
  CTQ27232.1 32 LIGANGSGKSTFMKIL 47
                89*********99865 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00054
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdllkkldkek 61 
                 ++lll+ + ++ + G  G+GK++++k+l+ +l++++
  CTQ27232.1 338 VNLLLEVGEKIAILGANGVGKSTMLKTLVGELQPDN 373
                 5789999*********************99999876 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.17        77       3      26 ..      32      55 ..      30      83 .. 0.85
   2 ?    7.2   0.1     0.014       6.4       3      28 ..     350     375 ..     348     469 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.17
                EESSTTSSHHHHHHHHHHHHTHEE CS
         AAA  3 lyGppGtGKTllakavakelgvef 26
                l+G  G GK++++k +  +l+ ++
  CTQ27232.1 32 LIGANGSGKSTFMKILGGDLEPTL 55
                89*************998886554 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.014
                 EESSTTSSHHHHHHHHHHHHTHEEEE CS
         AAA   3 lyGppGtGKTllakavakelgvefle 28 
                 + G  G+GK+++ k ++ el+ +  +
  CTQ27232.1 350 ILGANGVGKSTMLKTLVGELQPDNGS 375
                 6799***************9644333 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.012       5.4       2      34 ..      33      62 ..      32      68 .. 0.74
   2 ?    4.3   0.1     0.066        30       1      17 [.     350     366 ..     350     377 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.012
  ATP_bind_1  2 vGpaGsGKttfvgalseilelrgrsvavvNLDP 34
                +G  GsGK+tf++ l   le +   +  v LDP
  CTQ27232.1 33 IGANGSGKSTFMKILGGDLEPT---LGNVSLDP 62
                89**********9886655544...55555665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.066
  ATP_bind_1   1 vvGpaGsGKttfvgals 17 
                 ++G  G+GK+t+ ++l+
  CTQ27232.1 350 ILGANGVGKSTMLKTLV 366
                 689*********99986 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1      0.19        85       3      20 ..      32      49 ..      31      57 .. 0.81
   2 ?    8.5   0.0    0.0043         2       1      22 [.     348     369 ..     348     465 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.19
                EEEBTTTTHHHHHHHHHT CS
   Dynamin_N  3 vvGsqSsGKSSvlnaLlg 20
                ++G+  sGKS+++  L g
  CTQ27232.1 32 LIGANGSGKSTFMKILGG 49
                699*********976544 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0043
                 EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlged 22 
                 ia++G+   GKS++l  L+ge 
  CTQ27232.1 348 IAILGANGVGKSTMLKTLVGEL 369
                 899*****************85 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.74   3.4e+02       4      17 ..      32      45 ..      29      52 .. 0.88
   2 ?   10.4   0.1    0.0012      0.56       1      22 [.     347     368 ..     347     396 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.74
                EESSTTSSHHHHHH CS
         Roc  4 lvGdsgvGKtsllk 17
                l+G +g+GK++++k
  CTQ27232.1 32 LIGANGSGKSTFMK 45
                89*********997 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0012
                 EEEEESSTTSSHHHHHHCHCT- CS
         Roc   1 KvvlvGdsgvGKtsllkrfved 22 
                 K+ ++G +gvGK+++lk +v +
  CTQ27232.1 347 KIAILGANGVGKSTMLKTLVGE 368
                 89***************99854 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.7   0.00045      0.21       7      63 ..     243     299 ..     239     305 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00045
        BRE1   7 klekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkk 63 
                   ++a+e l + + kk++++++l++ ++r +a+ +k +q    a+   +    e+k+
  CTQ27232.1 243 AATQARERLLADNAKKKAQIADLQSFVSRFSANASKSRQATSRARQIDKIKLEEVKA 299
                 679**********************************99887775444444444444 PP

>> VirE  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.019       8.7      57      75 ..      32      50 ..      29      66 .. 0.93
   2 ?   -1.6   0.0       4.2   1.9e+03     107     121 ..     257     271 ..     232     282 .. 0.65
   3 ?    2.1   0.0      0.29   1.3e+02      56      75 ..     349     368 ..     343     382 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.019
        VirE 57 LvGkqgsgKstfleklgee 75
                L G+ gsgKstf+++lg++
  CTQ27232.1 32 LIGANGSGKSTFMKILGGD 50
                88**************976 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.2
        VirE 107 snkaeveaiKafitr 121
                  +ka++++++ f++r
  CTQ27232.1 257 KKKAQIADLQSFVSR 271
                 346666666666666 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.29
        VirE  56 vLvGkqgsgKstfleklgee 75 
                  + G+ g+gKst+l++l +e
  CTQ27232.1 349 AILGANGVGKSTMLKTLVGE 368
                 4569************9444 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.28   1.3e+02       9      24 ..      32      47 ..      31      68 .. 0.89
   2 ?    7.1   0.0    0.0063       2.9       7      32 ..     348     373 ..     344     402 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.28
                EEEBTTSSCCCCCCTT CS
      Septin  9 vvGesglGkttlintl 24
                ++G++g Gk+t+++ l
  CTQ27232.1 32 LIGANGSGKSTFMKIL 47
                589**********976 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0063
                 EEEEEBTTSSCCCCCCTTSSSS---- CS
      Septin   7 lmvvGesglGkttlintlfetdliee 32 
                 + + G++g+Gk+t+++tl+ +   ++
  CTQ27232.1 348 IAILGANGVGKSTMLKTLVGELQPDN 373
                 5689**************97654444 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.022        10       1      15 [.      34      48 ..      34      62 .. 0.89
   2 ?    3.7   0.1       0.1        47       1      18 [.     352     369 ..     352     377 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.022
      CLP1_P  1 GpkdsGKSTlarlLl 15
                G++ sGKST++++L 
  CTQ27232.1 34 GANGSGKSTFMKILG 48
                8899*********96 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.1
      CLP1_P   1 GpkdsGKSTlarlLlNya 18 
                 G++ +GKST+ ++L+ ++
  CTQ27232.1 352 GANGVGKSTMLKTLVGEL 369
                 8899**********9886 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1      0.29   1.3e+02       1      14 [.      33      46 ..      33      54 .. 0.85
   2 ?    7.0   0.1     0.017       7.6       1      19 [.     351     369 ..     351     374 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.29
                EE-TTSSHHHHHHH CS
      AAA_17  1 lGgPGsGKgtqcek 14
                +G  GsGK+t ++ 
  CTQ27232.1 33 IGANGSGKSTFMKI 46
                5999******9964 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.017
                 EE-TTSSHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky 19 
                 lG  G+GK+t++++lv ++
  CTQ27232.1 351 LGANGVGKSTMLKTLVGEL 369
                 699************9876 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.8   0.00059      0.27      28      43 ..      32      47 ..      17      48 .. 0.92
   2 ?    6.8   0.3      0.01       4.6      21      43 ..     344     365 ..     334     403 .. 0.85
   3 ?   -1.1   0.0       2.5   1.2e+03     322     336 ..     455     469 ..     446     472 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00059
      AAA_15 28 liGkNnsGKSsileal 43
                liG+N+sGKS+++++l
  CTQ27232.1 32 LIGANGSGKSTFMKIL 47
                8*************98 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.01
      AAA_15  21 lseeltvliGkNnsGKSsileal 43 
                 + e    + G+N++GKS+ l+ l
  CTQ27232.1 344 VGE-KIAILGANGVGKSTMLKTL 365
                 455.78999***********987 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.5
      AAA_15 322 eknvilliEEPEahL 336
                 +k++il+++EP +hL
  CTQ27232.1 455 QKPNILVMDEPTNHL 469
                 579********9998 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3      0.31   1.4e+02      19      33 ..      31      45 ..      27      48 .. 0.85
   2 ?    7.6   0.1    0.0034       1.6      17      39 ..     347     369 ..     342     376 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.31
  TrwB_AAD_bind 19 livGttGsGKtqale 33
                    ++G+ GsGK++ ++
     CTQ27232.1 31 GLIGANGSGKSTFMK 45
                   689********9987 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0034
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrai 39 
                    +i+i+G+ G GK+++l+ l+ ++
     CTQ27232.1 347 KIAILGANGVGKSTMLKTLVGEL 369
                    799***************99776 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.7    0.0015      0.71      11      37 ..      18      45 ..       9      48 .. 0.79
   2 ?   -1.5   2.0       6.6     3e+03     109     156 ..     257     310 ..     235     331 .. 0.39
   3 ?    8.9   0.2    0.0043         2      23      37 ..     349     363 ..     332     419 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0015
      AAA_23 11 rdqeidF.skgltlItGpNGaGKTTild 37
                ++ ++ F + + + ++G NG+GK+T++ 
  CTQ27232.1 18 ENISVKFgGGNRYGLIGANGSGKSTFMK 45
                666677755577889**********986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 6.6
      AAA_23 109 lelleideleqfise....llgskki......ilnlilflgqerfeefelkdkkerle 156
                 +++ +i++l+ f+s+          +      + ++i+ ++ e+ +  ++++++ r e
  CTQ27232.1 257 KKKAQIADLQSFVSRfsanA----SKsrqatsRARQIDKIKLEEVKASSRQNPFIRFE 310
                 33334444444444422211....1111122222222222222222222222222222 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0043
      AAA_23  23 lItGpNGaGKTTild 37 
                 +I G NG GK+T l 
  CTQ27232.1 349 AILGANGVGKSTMLK 363
                 8***********996 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.44     2e+02      38      49 ..      32      43 ..      25      48 .. 0.88
   2 ?   -2.6   0.0       7.7   3.5e+03     126     148 ..     188     208 ..     160     209 .. 0.70
   3 ?    6.4   0.0     0.013       6.1      27      51 ..     339     363 ..     329     378 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.44
      AAA_25 38 laGapgtGKttl 49
                l+Ga g+GK+t+
  CTQ27232.1 32 LIGANGSGKSTF 43
                89*********8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.7
      AAA_25 126 ltadvdaleaaieevegvrlvvi 148
                 +   +++le+++++  +  +++i
  CTQ27232.1 188 I-DTIRWLEQTLND-RDSTMIII 208
                 3.358899999999.78999987 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.013
      AAA_25  27 kgllpagelallaGapgtGKttlal 51 
                   ll  ge +++ Ga g+GK+t++ 
  CTQ27232.1 339 NLLLEVGEKIAILGANGVGKSTMLK 363
                 557788999*************985 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2      0.36   1.7e+02       4      18 ..      32      46 ..      31      54 .. 0.89
   2 ?   -2.2   0.0       8.1   3.7e+03      58      92 ..     164     201 ..     153     205 .. 0.70
   3 ?    3.6   0.1      0.13        60       4      20 ..     350     366 ..     347     378 .. 0.83
   4 ?    1.2   0.0      0.74   3.4e+02      53      90 ..     446     482 ..     418     489 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.36
                EE--SSSSHHHHHHH CS
       AAA_5  4 LvGppGtgKselaer 18
                L+G+ G+gKs++++ 
  CTQ27232.1 32 LIGANGSGKSTFMKI 46
                8*********99875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 8.1
                 -------..G-SEEEEES.GGG--HHHHHHHHHHHHSS CS
       AAA_5  58 plvraar..egeilvlDE.veraesevlnsLlslleer 92 
                 +l  +a   +++il+lDE  ++++ +++  L + l++r
  CTQ27232.1 164 VLLAQALfsNPDILLLDEpTNNLDIDTIRWLEQTLNDR 201
                 55544446689999999933455588888888888887 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.13
                 EE--SSSSHHHHHHHGG CS
       AAA_5   4 LvGppGtgKselaerla 20 
                 ++G+ G+gKs++ + l 
  CTQ27232.1 350 ILGANGVGKSTMLKTLV 366
                 79**********99886 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.74
                 ....--------G-SEEEEESGGG--.HHHHHHHHHHHH CS
       AAA_5  53 slvdsplvraaregeilvlDEverae.sevlnsLlslle 90 
                 ++  ++l+  ++++ ilv+DE ++    e ++sL++ le
  CTQ27232.1 446 RMLFGKLM--MQKPNILVMDEPTNHLdMESIESLNMALE 482
                 44456666..99*********65544499******9998 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.1   4.8e+02       4      17 ..      32      45 ..      29      54 .. 0.81
   2 ?    9.6   0.1    0.0018      0.81       1      30 [.     347     376 ..     347     378 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.1
                EE--TTSSHHHHHH CS
    NTPase_1  4 iTGppGvGKtTlvk 17
                + G  G+GK+T++k
  CTQ27232.1 32 LIGANGSGKSTFMK 45
                66999******987 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0018
                 EEEEE--TTSSHHHHHHHHHHHH...GGGE CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlellkssgvkv 30 
                 k++i G  GvGK+T++k ++ +l+ ++ +v
  CTQ27232.1 347 KIAILGANGVGKSTMLKTLVGELQPDNGSV 376
                 58899*****************99887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      710  (0.0396006); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              39  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.38
# Mc/sec: 4135.90
//
Query:       CTQ27233.1  [L=787]
Description: putative alpha-xylosidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.2e-117  392.4   2.0   4.3e-117  392.0   2.0    1.2  1  Glyco_hydro_31   Glycosyl hydrolases family 31
      1e-23   83.4   0.1    3.3e-23   81.8   0.1    2.0  1  Gal_mutarotas_2  Galactose mutarotase-like
    4.1e-08   33.4   0.0    2.2e-07   31.1   0.0    2.2  2  DUF5110          Domain of unknown function (DUF5110)
    2.7e-06   27.6   0.0    5.1e-06   26.7   0.0    1.4  1  DUF4968          Domain of unknown function (DUF4968)


Domain annotation for each model (and alignments):
>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.0   2.0  9.5e-121  4.3e-117       1     438 [.     238     681 ..     238     683 .. 0.92

  Alignments for each domain:
  == domain 1  score: 392.0 bits;  conditional E-value: 9.5e-121
                     EEEE-SSHHHHHHHHHHHH-------GGGGSEEEE-TT--....SHHHHHHHHHHHHHTT--EEEEEESCGGSB...TTCCTB-.TTTSS-HHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31   1 yvflGptpkevvkqyteltGrpalpPrwalGfhqsrygyk....deeeveevvdkfreagiPldvivlDidymd...krkdftwdkerFpdpkem 88 
                     y+f+G+++ +v+k + +ltG++   P+w+lG+  s++ y+     +++++++++ ++++ iP+d + l+  y +   kr +f+w+ ++ p+pk m
      CTQ27233.1 238 YLFTGKQVLDVTKAFVRLTGKTLFGPKWSLGYSGSTMHYTdapdAQNQLMNFIRLCEQHAIPCDSFQLSSGYTSingKRYVFNWNYDKVPQPKVM 332
                     99************************************9988889***************************76655556*****999******* PP

                     HHHHHHTT-EEEEEE-SEE.E.-TTSHHHHHHHHTTSBECCCCCS..TCEC.TSSEEEEB-TTSHHHHHHHHHHHHHHHCTCT--EEEE-STTTB CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31  89 vdelhekgvklvvivdpaiskqeeeyeafdegkekgvflknkdgs..ykgk.wpgstafpDftnpearewwkkelkkflldlgvdglwiDmneps 180
                      +++h++g+kl ++++p++ +   +++ + e++e+g+f+++++++     + w  +++++Dftnp++  ww++ ++++ll++g+d  w+D+ne +
      CTQ27233.1 333 SQSFHDAGLKLAANIKPCLLQ---DHPRYGEVAERGLFIRDSQTDapERSSfWDDEGSHLDFTNPQTVAWWQEGVTTQLLEMGIDSTWNDNNEYE 424
                     *****************9954...4899***********9998888744446999**************************************65 PP

                     .SCCCCHH.HHCCCTSCETTCC...HHHHCCCHHHHHHHHHHHHHHHHTTTST-EEEESSEETTGGGCTEEE--S-BSSHHHHHHHHHHHHHHHT CS
                     xxxxxxxx.xxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 181 nfeegsds.eekeaketkaags...hydvhnlygllmakatyeglkekkpkkrpfiltRstfaGsqryaahWsGdnassWeslresipallsfsl 271
                     + +    + +          g+    + ++ +++llm +a+ e++++  p+krp++++Rs++aG+qry+ +WsGdn+++W++lr++i+++l +sl
      CTQ27233.1 425 VWDGEARCyG--F-------GReiaIKHIRPVMPLLMMRASLEAQQRFAPQKRPYLISRSGCAGMQRYVQTWSGDNRTNWDTLRYNIRMGLGMSL 510
                     4332222222..1.......11233466999**************************************************************** PP

                     TT--SEEEECT-SG..HCHHHHHHHHHHHHTTSSSEEE--ST.TSS--SHHHHCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH---SEE-HHH CS
                     xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 272 sGvpfwgaDigGFe..ntteelyaRWvqlGafsPffrnHssk.dakrqepwafgeeveeaarkaielRyrLlPylYtlfyeahetglpvvrplfl 363
                     sG+  +g+D+gGF+  ++++el++RWvq G+++P f +Hs++ d++ +e w++++ ++ a+r aielRyrLlPylYtl ++ah++++p++rp fl
      CTQ27233.1 511 SGLFNVGHDVGGFSgdKPEPELFVRWVQNGVMHPRFTIHSWNdDQTVNEAWMYPA-ITPAIRSAIELRYRLLPYLYTLLWQAHADDEPMLRPTFL 604
                     *************8745599**********************99999******99.*************************************** PP

                     H-TT-CCCCC--S-EEETTTEEE----STT-SEEEEEE-SS..EEEETTT--EEESSEEEEEE--TTSS-EEEETTE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 364 efpedektfdiddqfmfGdsLLvaPvleeeatsvevyLPgg..kWydfwtgekyeggqtveltapldeiplfvraGa 438
                     ++++d +tf+  d+f++G++LLva v+e++a+++ev+LP++   Wydf+++++++ggq v+l+apl+++pl+vraGa
      CTQ27233.1 605 DHQHDAQTFAECDDFLLGRDLLVASVVEPGARQREVWLPDNqaGWYDFYSHQWFAGGQWVTLDAPLEKLPLLVRAGA 681
                     ***************************************5558***************99******99********7 PP

>> Gal_mutarotas_2  Galactose mutarotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.1   7.4e-27   3.3e-23       1      66 []     146     213 ..     146     213 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 7.4e-27
                      T-EEEEEES-SS-SS-TTEEEEE-----TS-HCC.CTS-SCEEEEEEEE..TCEEEEEE--SSSEEEE CS
  Gal_mutarotas_2   1 dehvyGlGEkagplnlrgtryrlwntdafgyeaessdplYgsiPfmisl..segyGvfvdnpaetwfD 66 
                      de++yGlGEkag l++ g+ry++ n+da+gy+a s+dplY++iPf i+   + +yG+f+dn + +w D
       CTQ27233.1 146 DERFYGLGEKAGDLQRTGKRYEMRNLDAMGYNAVSTDPLYKHIPFTITQrsDISYGLFYDNLSSCWLD 213
                      79*************************************************888************98 PP

>> DUF5110  Domain of unknown function (DUF5110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.2   5.3e+03      13      28 ..     378     393 ..     371     406 .. 0.82
   2 !   31.1   0.0   4.8e-11   2.2e-07       3      67 ..     701     765 ..     699     770 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
                 EEEEEEE-SSSSCCCC CS
     DUF5110  13 sftlYeDDGetydYek 28 
                 + ++++D+G   d+ +
  CTQ27233.1 378 RSSFWDDEGSHLDFTN 393
                 56799****9999987 PP

  == domain 2  score: 31.1 bits;  conditional E-value: 4.8e-11
                 EEEEE...--TTSEEEEEEE-SSSSCCCCTBEEEEEEEEEC-STTCEEEEEEEEEE-TT...S.CCCEE CS
     DUF5110   3 tldvy...gggegsftlYeDDGetydYekGeyaktkftveadggkltltigpreGsykg.mpkersyel 67 
                 +l ++   g+g+++  l+eDDGe+  Y++G+  +++ +++ +++++ l+i+ ++G+y++ +   + ++l
  CTQ27233.1 701 ELQLFplkGTGSTRGLLFEDDGESWGYKQGDALWLEWEMTCSASSINLDIN-ARGNYRPaW---KALKL 765
                 6777876666777777**************9888876666666********.78***9944...66555 PP

>> DUF4968  Domain of unknown function (DUF4968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.1e-09   5.1e-06       3      78 ..      14     103 ..      12     115 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.1e-09
     DUF4968   3 gntvefttenae.lritvltddiiRvryapdgefeedesyavvkkad..............ektefeveekedevvikTekltvkiekspl 78 
                 +++ve+t++ +  l + vl+++++Rv ++ +g+++ d++++++ ++d              +  ++++ +++d+++i+T +l+v+++ +pl
  CTQ27233.1  14 KHHVELTVDGQHtLCLYVLEENLFRVLLKRQGQLALDRTWSIAPQQDvpwegrarddlsgfSLPAWQLAQEGDTLTIATRQLRVTVH-QPL 103
                 5678888888766********************************99***************************************9.655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 5974.24
//
Query:       CTQ27234.1  [L=433]
Description: Hexuronate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-58  199.0  56.5    1.8e-55  188.3  35.6    2.0  2  MFS_1     Major Facilitator Superfamily
    1.7e-08   33.8  26.1    1.5e-07   30.7   8.4    2.4  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.3  35.6     2e-59   1.8e-55       2     352 ..      30     390 ..      29     391 .. 0.87
   2 !   24.5  12.9   1.2e-09   1.1e-05      69     177 ..     320     430 ..     307     433 .] 0.82

  Alignments for each domain:
  == domain 1  score: 188.3 bits;  conditional E-value: 2e-59
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 ll++ +++++r+ lg+++p  l+ +lgi+  +++++++++ l++ +++++ G+l+d +G +  ++++++l+al+ +++  ++++w  l+ lr+++G ++
  CTQ27234.1  30 LLGVTVNYITRNSLGIIAP-ELKATLGITTEQYSWIVGAFQLAYTIFQPLCGWLIDVIGLKLGFMICATLWALA-CIAHAGAGSWlHLAMLRFFMGGAE 126
                 78999**************.9*****************************************************.555534999999************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......kgt 191
                 +a++pa a  i +wfpk+er+ a g++++gfs+Ga+l+p++  +  +s+gW+++f++ ++++ll++vl ++ ++++p ++++ s+ e+e       + +
  CTQ27234.1 127 AAATPANAKTIGEWFPKSERPIAAGWAGVGFSIGAMLAPPIIYFAHASFGWQGAFMFTGALALLWVVL-WWAFYQTPEKHPNLSKSELEyikqdneAPP 224
                 *****************************************************************997.555568888888888888889966666556 PP

       MFS_1 192 gpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr....lgr..rrrlllallll 284
                 +++p+++a+k + k++ ++ + i ++++  +++ l++++plyl + +g++ l +++++  l++l++  +++++g+l +     +g    +  + + + +
  CTQ27234.1 225 VKQPFFTALKTVSKNKRFYGIAIPAFMAEPAWAVLSFWVPLYLAKEHGMD-LKQIAMFAWLPFLAADLGSVVSGYLTRLyvrwFGCtrVNSVIASSVTG 322
                 6666666***********988888888888********************.*************************98866664443344444444444 PP

       MFS_1 285 llaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 +++ l+lal+a t ++ ++++++ + Gfg+ +++++l al+++++ + +++t++g  ++a  ++++l+
  CTQ27234.1 323 AFLMLSLALVAITRDPYITIILISIGGFGHQIISCMLSALVVESFDKGQMATVNGMRGSAAWIASFLF 390
                 4444455555555666666666666777******************************9999999886 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1.2e-09
       MFS_1  69 lllfalglllll.fa.sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivslla 164
                 +++ +l+ l l+ +a +  + + ++l  + G+g  ++  +  al+++ f k + + ++g+ ++++ +++ l  ll g+ a+ +g+  +f++++++ l++
  CTQ27234.1 320 VTGAFLM-LSLAlVAiTRDPyITIILISIGGFGHQIISCMLSALVVESFDKGQMATVNGMRGSAAWIASFLFSLLIGVTADKIGFNPLFIAMGFFDLIG 417
                 3333333.2333123599999****************************************************************************** PP

       MFS_1 165 fvlfllllpeepp 177
                 +v+ ++++ e++ 
  CTQ27234.1 418 AVFLVAFIAERRA 430
                 **75555555444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   8.4   1.7e-11   1.5e-07     249     438 ..      19     199 ..       4     208 .. 0.81
   2 !    8.8   9.6   7.2e-05      0.64     316     439 ..     311     427 ..     255     432 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.7e-11
                 SH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHH.H..HHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTS CS
    Sugar_tr 249 ktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfva.i..flvdrfGRRtllllGaagmaicfvilgivalllvak 344
                 k+ r+ +l+ ++l ++ ++ + n++ +++p++  +lg++++ + + ivg+ + + t++  +  +l+d +G +  ++++a+  a++++  +       a 
  CTQ27234.1  19 KNLRWWVLVLFLLGVTVNYITRNSLGIIAPELKATLGITTE-QYSWIVGAFQLAYTIFQpLcgWLIDVIGLKLGFMICATLWALACIAHA------GA- 109
                 348999***********************************.8888888888888877743569********999999999999988886......23. PP

                 S...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS- CS
    Sugar_tr 345 skaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvp 438
                     s + ++++ +f+   ++  +p  + ++ E fp+s R++a+  a +   +  +l   ++ +++ + g +   ++f+g ++l  ++ ++ ++
  CTQ27234.1 110 ---GSWLHLAMLRFFMGGAEAAATPANAKTIGEWFPKSERPIAAGWAGVGFSIGAMLAPPIIYFAHASFG-WQGAFMFTGALALLWVVLWWAFY 199
                 ...3567778888888899999999999****************************************99.44444444444444444444333 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 7.2e-05
                 SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH CS
    Sugar_tr 316 RRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig 414
                 R + ++ +++++a++++ l+    +++       ++ i++i +  + ++  + +++  lv E f+++  +++  +   + w+a+fl sll+ +++++ig
  CTQ27234.1 311 RVNSVIASSVTGAFLMLSLA--LVAITRD----PYITIILISIGGFGHQ-IISCMLSALVVESFDKGQMATVNGMRGSAAWIASFLFSLLIGVTADKIG 402
                 44556666777777777776..4444444....4777777777766666.57888899***************************************** PP

                 T-HHHHHHHHHHHHHHHHHHHHS-- CS
    Sugar_tr 415 ggyvflvfaglavlfiifvfffvpe 439
                   + f+  +++ +++++f + f+ e
  CTQ27234.1 403 FNPLFIAMGFFDLIGAVFLVAFIAE 427
                 9999999999999999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3385.75
//
Query:       CTQ27235.1  [L=414]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-27   95.5   1.3    2.2e-26   93.2   0.1    2.5  2  Peripla_BP_3   Periplasmic binding protein-like domain
    4.4e-13   49.3   0.0    6.7e-13   48.7   0.0    1.2  1  Peripla_BP_1   Periplasmic binding proteins and sugar binding
    9.4e-07   28.5   0.3    2.2e-06   27.4   0.3    1.6  1  LacI           Bacterial regulatory proteins, lacI family
    3.2e-05   23.6   0.2    0.00012   21.8   0.1    2.0  2  HTH_IclR       IclR helix-turn-helix domain
    8.9e-05   22.3   0.0    0.00028   20.7   0.0    1.9  1  MarR_2         MarR family
    0.00042   20.6   0.2     0.0013   19.0   0.2    1.8  1  HTH_31         Helix-turn-helix domain
    0.00052   20.0   0.0     0.0011   19.0   0.0    1.5  1  HTH_3          Helix-turn-helix
     0.0014   18.6   0.0       0.02   14.9   0.0    2.8  3  HTH_29         Winged helix-turn helix
     0.0014   18.3   0.0     0.0054   16.5   0.0    2.0  1  HTH_38         Helix-turn-helix domain
     0.0014   18.3   0.0     0.0077   16.0   0.0    2.3  1  HTH_23         Homeodomain-like domain
     0.0037   17.1   0.0      0.015   15.2   0.0    1.9  2  HTH_5          Bacterial regulatory protein, arsR family
      0.006   16.1   0.0      0.012   15.1   0.0    1.5  1  HTH_24         Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.013   15.3   0.8       0.07   13.0   0.1    2.4  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.025   14.6   0.0      0.061   13.3   0.0    1.7  1  HTH_Crp_2      Crp-like helix-turn-helix domain
      0.039   14.1   0.0       0.14   12.3   0.0    2.0  1  HTH_28         Helix-turn-helix domain
      0.044   13.3   0.0      0.075   12.6   0.0    1.4  1  Peripla_BP_4   Periplasmic binding protein domain
      0.071   12.5   0.0       0.19   11.2   0.0    1.8  1  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
      0.076   13.1   0.0       0.14   12.3   0.0    1.5  1  HTH_AraC       Bacterial regulatory helix-turn-helix proteins
       0.15   12.2   0.0       0.33   11.1   0.0    1.6  1  HTH_7          Helix-turn-helix domain of resolvase
        0.2   11.4   0.0       0.35   10.6   0.0    1.3  1  Sigma54_DBD    Sigma-54, DNA binding domain
       0.22   11.2   0.1       0.65    9.7   0.0    1.8  1  CENP-B_N       CENP-B N-terminal DNA-binding domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0         1   8.5e+02      25      79 ..     135     183 ..     120     216 .. 0.60
   2 !   93.2   0.1   2.6e-29   2.2e-26       2     166 .]     230     394 ..     229     394 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1
                   HHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.......HHHHHCC-SEEEE CS
  Peripla_BP_3  25 asderergfrqaleelglplnetvvaaddpaaaaaaraal..llqalklaalPtAvi 79 
                   ++ ++ +  ++al+++ ++l+ +  +++d++a+  ++++     qa        Av+
    CTQ27235.1 135 FYYRVIQSINNALAAHEVRLRYCALDENDSDANLFLARMNepETQA--------AVL 183
                   5556667788888999999998888888888887777776221122........222 PP

  == domain 2  score: 93.2 bits;  conditional E-value: 2.6e-29
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-.EEEEE-S-SS-SSHHHHH.......HHHHHCC-SEEEEESSCCHHHHHHHHHCC CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqaleelglp.lnetvvaaddpaaaaaaraal..llqalklaalPtAviaasDelAlgvlqalre 95 
                   ++L + Ghr ++ +      + +++++r+ g ++a ++ +l+  + +   +   ++a + +++   +l+ l+++ lPtA+++  D +A+g ++al+ 
    CTQ27235.1 230 RYLFDMGHRAVMNVM---CLRRYTMELRLGGIQEAWRARNLRfTASRDLISVANFSARETEEQVgaWLDGLQGRPLPTAFLVGGDFMAAGTVSALQK 323
                   79999****999999...666899******************555555566666666666665577777777777********************** PP

                   TT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  96 aglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   +glrvP+d+sv+++d+ +laa+   plT+v++p +elG +a+ ll ++l  ++ap+ + ll  +lv+R+S+
    CTQ27235.1 324 RGLRVPQDVSVMSIDGFNLAAIQEVPLTAVHVPRDELGSEAVHLLQQRLLRPEAPHGSLLLHGTLVVRDSV 394
                   ****************9999*****************************999999999999999******7 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   7.8e-16   6.7e-13      12     258 ..     132     371 ..     123     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 7.8e-16
                   TSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTTS-EEEE-HHHHH CS
  Peripla_BP_1  12 dePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaes.gipvialedaidapdgvPcvipddtqag 106
                   ++ f+  +++ i+ a+++h+v +   a +e++  a   +  +++    + ++ + d+   +i   a+  g p +++++  d+   +P++ pd   +g
    CTQ27235.1 132 SDIFYYRVIQSINNALAAHEVRLRYCALDENDSDAnLFLARMNEPETQAAVLLGIDDP--HIHGLAADlGKPCVLINCR-DEGMRLPSIAPDHRLIG 225
                   6679999*****************9999988766646667777778888888888776..8*****999**********.7668************* PP

                   HHHHHHHHHHHHHHTG.EEEEEE-TTSHHHHHHHHHHHHHHHTT-.GGGEEEEE-SSS.SHHHHHHHHHHHHT..T-...TT-SEEE-SSHHHHHHH CS
  Peripla_BP_1 107 eestqkLiaeghkrpi.allegpesaltakervqGflaalaeaGl.evkdvhvalgsn.diedaaealnelle..sh...PeidaivaindeaalGa 195
                   + + ++L   gh+  +  ++ + +   t + r +G  +a+++  l    ++++ ++ n + ++ +e + + l   ++   P+  a   + d +a+G 
    CTQ27235.1 226 QCAARYLFDMGHRA-VmNVMCLRR--YTMELRLGGIQEAWRARNLrFTASRDLISVANfSARETEEQVGAWLDglQGrplPT--AFLVGGDFMAAGT 317
                   *************9.543444433..46677888888888888775445666666666466777777777765322255999..************* PP

                   HHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHH CS
  Peripla_BP_1 196 vlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqk 258
                   v al+k+G l+ +++v     sv++ dg+   +   +++ pl+   +pr++lG +a   + q 
    CTQ27235.1 318 VSALQKRG-LRVPQDV-----SVMSIDGF---NLAAIQEVPLTAVHVPRDELGSEAVHLLQQR 371
                   ********.*******.....********...88899999***************99888775 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.3   2.5e-09   2.2e-06       4      42 ..      66     104 ..      63     105 .. 0.96

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.5e-09
                 HHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTT CS
        LacI   4 DVArlAGVSkaTVSrvLnnkerVseetrerVeaameeln 42 
                 ++A + G S +TVSrvL +k + s++ r  V+  ++el+
  CTQ27235.1  66 EIAARTGLSPSTVSRVLAGKANTSDKARRAVLDCARELG 104
                 8************************************96 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   1.4e-07   0.00012      16      40 ..      59      83 ..      56      84 .. 0.90
   2 ?   -3.3   0.0       9.6   8.2e+03      22      41 ..     178     197 ..     170     198 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.4e-07
                BSS-BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 16 pqeltlselArrtglpkStvhRlLq 40
                +  l+++e+A+rtgl++Stv+R L+
  CTQ27235.1 59 DKKLRVAEIAARTGLSPSTVSRVLA 83
                56799*****************986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.6
                 HHHHHHHTS-HHHHHHHHHH CS
    HTH_IclR  22 selArrtglpkStvhRlLqt 41 
                 ++ A  +g+  +  h+l + 
  CTQ27235.1 178 TQAAVLLGIDDPHIHGLAAD 197
                 66777889988999988765 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.3e-07   0.00028      20      43 ..      60      83 ..      52      84 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.3e-07
                SEEEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2 20 rdltvgelarrlglsksavsrilk 43
                ++l+v+e+a+r+gls+s+vsr+l+
  CTQ27235.1 60 KKLRVAEIAARTGLSPSTVSRVLA 83
                469******************986 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   1.5e-06    0.0013      14      52 ..      61      98 ..      52     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.5e-06
      HTH_31 14 GLsqeevAerlgvsestlsrlEqGrrgrpspavlealar 52
                 L+ +e A+r+g+s+st+sr+  G+  + s  + +a+++
  CTQ27235.1 61 KLRVAEIAARTGLSPSTVSRVLAGKA-NTSDKARRAVLD 98
                69************************.586665555443 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.3e-06    0.0011       8      37 ..      60      89 ..      57      92 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.3e-06
                TTHHHHHHHHHHTSSHHHHHHHHTTSSCSB CS
       HTH_3  8 lglsqeeLAeklGvsrstisriEnGernPs 37
                ++l  +e+A+++G+s+st+sr   G++n s
  CTQ27235.1 60 KKLRVAEIAARTGLSPSTVSRVLAGKANTS 89
                567779********************9988 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.3e-05      0.02       8      33 ..      58      82 ..      54      83 .. 0.85
   2 ?   -1.9   0.0       4.1   3.5e+03       3      17 ..      94     107 ..      93     107 .. 0.87
   3 ?   -1.8   0.0       3.7   3.2e+03      17      29 ..     179     191 ..     175     194 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.3e-05
      HTH_29  8 laeGvstvsqiAkllglsrrtvyrwl 33
                +++ + +v++iA+++gls++tv r+l
  CTQ27235.1 58 MDKKL-RVAEIAARTGLSPSTVSRVL 82
                45555.8*****************87 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.1
      HTH_29   3 qallllaeGvstvsq 17 
                 +a+l +a++++ v+q
  CTQ27235.1  94 RAVLDCARELG-VMQ 107
                 58999***999.997 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.7
      HTH_29  17 qiAkllglsrrtv 29 
                 q+A llg++ +++
  CTQ27235.1 179 QAAVLLGIDDPHI 191
                 99******98876 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.3e-06    0.0054      19      41 ..      60      82 ..      54      84 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.3e-06
      HTH_38 19 eGlslreIArrLgrspsTIsREl 41
                ++l ++eIA r g spsT+sR l
  CTQ27235.1 60 KKLRVAEIAARTGLSPSTVSRVL 82
                78999****************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     9e-06    0.0077      15      38 ..      59      82 ..      54      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9e-06
      HTH_23 15 aeGlsvreIAreLgvsrrTvyrwl 38
                +++l+v+eIA++ g s++Tv+r+l
  CTQ27235.1 59 DKKLRVAEIAARTGLSPSTVSRVL 82
                45899*****************97 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.8e-05     0.015      13      34 ..      59      80 ..      58      83 .. 0.88
   2 ?   -1.9   0.0       3.7   3.2e+03      17      30 ..      95     108 ..      91     109 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-05
                TSSEEHHHHHHHHTS-HHHHHH CS
       HTH_5 13 egelcvcelaeelglsqstvSh 34
                +++l v e+a+ +gls+stvS+
  CTQ27235.1 59 DKKLRVAEIAARTGLSPSTVSR 80
                56899****************8 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.7
                 EHHHHHHHHTS-HH CS
       HTH_5  17 cvcelaeelglsqs 30 
                  v ++a+elg+ q+
  CTQ27235.1  95 AVLDCARELGVMQG 108
                 67799****99775 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.5e-05     0.012      20      37 ..      64      81 ..      59      83 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.5e-05
      HTH_24 20 qreLAerlglSpstvnrr 37
                 +e+A r+glSpstv+r 
  CTQ27235.1 64 VAEIAARTGLSPSTVSRV 81
                68**************95 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   8.2e-05      0.07      19      36 ..      63      80 ..      59      80 .. 0.88
   2 ?   -0.7   0.1       1.6   1.3e+03      16      29 ..      92     105 ..      88     114 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.2e-05
  HTH_AsnC-type 19 syaeLAervGlSestvlr 36
                    +ae+A+r+GlS+stv r
     CTQ27235.1 63 RVAEIAARTGLSPSTVSR 80
                   589*************87 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.6
  HTH_AsnC-type  16 aRisyaeLAervGl 29 
                    aR+ + + A+++G+
     CTQ27235.1  92 ARRAVLDCARELGV 105
                    899999999*9998 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.1e-05     0.061      21      43 ..      61      83 ..      18      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.1e-05
                EHHHHHHHHHTTSSHHHHHHHHH CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrils 43
                +l  +e+A++ Gl+++tvsr+l+
  CTQ27235.1 61 KLRVAEIAARTGLSPSTVSRVLA 83
                67789****************95 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00017      0.14      13      33 ..      61      82 ..      54      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00017
      HTH_28 13 h.svreaArelgisrrtvyrWi 33
                + +v+e+A++ g+s++tv+r +
  CTQ27235.1 61 KlRVAEIAARTGLSPSTVSRVL 82
                4589**************9987 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.8e-05     0.075     137     225 ..     250     344 ..     195     373 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.8e-05
                   HHHHHHHHHHHHHHH......-T.TCEECCEEESTTTCHHHHHHHHHHHHH..TT.T.ECEEEESSCCHHHCHHHHHHHTTT.TSTEE.EEEES-HH CS
  Peripla_BP_4 137 naeeriegfrkvlke......yp.gikivaevaganwdaekaqqaleallt..an.p.ldgilaandgmaegalealeaagl.agkvv.vtgqDatp 220
                     e+r+ g+ ++ ++      ++ ++       +an +a ++ +++ a+l   +  p   ++l  +d ma g ++al++ gl  +++v v+ +D+ +
    CTQ27235.1 250 TMELRLGGIQEAWRArnlrftASrDLIS-----VANFSARETEEQVGAWLDglQGrPlPTAFLVGGDFMAAGTVSALQKRGLrVPQDVsVMSIDGFN 341
                   5566777777776663333332223333.....448999999999999999885547889**********************744443377777654 PP

                   HHHHH CS
  Peripla_BP_4 221 ealea 225
                     l+a
    CTQ27235.1 342 --LAA 344
                   ..445 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00022      0.19      30      48 ..      64      82 ..      64      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
  HTH_Tnp_ISL3 30 vkavArqlgvSwtTVwril 48
                  v+++A+++g+S++TV r+l
    CTQ27235.1 64 VAEIAARTGLSPSTVSRVL 82
                  789**************97 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00017      0.14       2      28 ..      55      81 ..      54      83 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00017
                HCCCSCT--HHHHHHHTTSSHHHHHHH CS
    HTH_AraC  2 renlstnltiediAdelgfSrsyFsrl 28
                 ++++ +l++++iA+  g+S+s+ sr+
  CTQ27235.1 55 DHKMDKKLRVAEIAARTGLSPSTVSRV 81
                6678899******************98 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00039      0.33      23      44 ..      63      84 ..      58      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00039
                -STTTSSSS---SSSS--SS-- CS
       HTH_7 23 siskIAkevnisRsTvYRylad 44
                 +++IA ++++s+sTv R+la 
  CTQ27235.1 63 RVAEIAARTGLSPSTVSRVLAG 84
                5789***************985 PP

>> Sigma54_DBD  Sigma-54, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00041      0.35      48      74 ..      60      86 ..      48      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00041
                 XXXXHHHHHTTSSSXHHHHHHHHHHXE CS
  Sigma54_DBD 48 rpltlrevaealelhesTvSRvvsnky 74
                 + l + e+a   +l+ sTvSRv ++k 
   CTQ27235.1 60 KKLRVAEIAARTGLSPSTVSRVLAGKA 86
                 678999*****************9996 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00076      0.65      24      47 ..      63      86 ..      56      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00076
                -HHHHHHHHT--CCHHHHHHHCHH CS
    CENP-B_N 24 SkaelarrfnvpestlsdilknKk 47
                ++ae+a r ++ +st+s++l+ K+
  CTQ27235.1 63 RVAEIAARTGLSPSTVSRVLAGKA 86
                89******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3385.86
//
Query:       CTQ27236.1  [L=421]
Description: hypothetical protein CH1034_160224 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     9e-143  476.0   0.0   1.1e-142  475.7   0.0    1.0  1  DUF1479   Protein of unknown function (DUF1479)
     0.0059   16.8   0.0     0.0098   16.1   0.0    1.2  1  COG5      Golgi transport complex subunit 5


Domain annotation for each model (and alignments):
>> DUF1479  Protein of unknown function (DUF1479)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  475.7   0.0  1.2e-146  1.1e-142       5     416 .]      16     419 ..      10     419 .. 0.99

  Alignments for each domain:
  == domain 1  score: 475.7 bits;  conditional E-value: 1.2e-146
                 HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHTT--SS-EEEHHHHHCT---HHHHHHHHHHTEEEEETSS-HHHHHHHHHHHHHHHHHT. CS
     DUF1479   5 srfadlkrkLveeeakeeevkaswerlikaleeeieeikekgseliPeidfkdieegavsaefsaeikrrGvlvvrgvvpeeeaeewkeeikeYlekn. 102
                 ++++++k++L+++ ++ ++v+++++  i+++ +eie++k++g+e++P++ f+di+eg+vs+e++a+ikrrG++v++g++p+e+a +w++ + eYl++n 
  CTQ27236.1  16 AAIRQMKQALRAQIGDVQAVFDKLSARISERLQEIETLKAAGQEVWPTVPFRDIAEGTVSDEQRAAIKRRGCAVIKGHFPREQALAWDTAMLEYLDRNh 114
                 689************************************************************************************************ PP

                 .........SS.HHHTTSSS-CEE-----HHHHHHHCSHHHHHHHHHHHTTSB-E.TTEESSEEEEE------EEEE-TT--B--ECCEESS-STHHHH CS
     DUF1479 103 .........sd.ikglpkekpqiyelyWskaqvkaRahpnvlaaqkflnslwese.dekkrislatpitYaDrlrirkpgdasfaLgphvDgGsleRWe 190
                          ++ +++l +++p+iy +yWs++q++aR++++++a+q+fln+lw+ e + k++++++++++Y+Dr+r+r+pg++s++Lg+h+D+G+leRW+
  CTQ27236.1 115 fddvykgpgDSfFGSLEASRPEIYPIYWSPSQMQARQSDEMAAVQSFLNRLWRFEqNGKRWFDPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWL 213
                 ********96669****************************************999******************************************* PP

                 -HHHHHHTHHHHTS-GGG--TTB-TTGGG-----..STT--SS--SEEEEEESS-B-TTCT-EEE-S-TT.HHHHHHHHCCSTTS-............. CS
     DUF1479 191 deeYrkvYkkvfeGeweeydpwdaaeRveakedlyngagacsvfRtfQGwlalsdvkpgeGtlrvlPlvklataYllLRpffeekkeeeelaeelkeeq 289
                   +Y++v+++vf+G++++ydpwdaa+R+e++e++++++++csvfRtfQGw+alsd+ pg+G+l+v+P+++ a+aY+lLRp++++++             
  CTQ27236.1 214 LPAYQQVFANVFNGNIDAYDPWDAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMIPGQGLLHVVPIPE-AMAYVLLRPLLDDVP------------- 298
                 **********************************************************************.**************9............. PP

                 TT-STT--TTS-EE--TTT-HH..HHTT-EE---B-TT-EEEEETT--EEE-SBCSSSS-EEEEE--B-EESHHHHHHHHHHHHHHHHT---TTS-S-- CS
     DUF1479 290 dsklpgavpgsaqelteelhphLelketlvsiPdleaGDyvvWhcdlihavdkehegkkdssvlYipavPltqknaeylarqrkaflrgkpppDFpseg 388
                 +++l+g++pg+++ ++e++hp   l ++l siP l+aGD+v+Whcd+ih+v+++++++++ +v+Yipa+P+++kn++y+++++ a+++g +p DFp+e+
  CTQ27236.1 299 EDELCGVAPGRVLPISEQWHPL--LIKALSSIPALNAGDSVWWHCDIIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAQKVKIALEKGASPGDFPRED 395
                 789*******************..9************************************************************************99 PP

                 G...GGG-TT---GGG--HH.HHHCTT. CS
     DUF1479 389 sGlgeaefagrlteedlreveGlralgl 416
                 +   ea+++gr+t edl+ + G+ralg+
  CTQ27236.1 396 Y---EASWQGRFTLEDLNIH-GKRALGM 419
                 9...***************9.****996 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.1e-06    0.0098      68     116 ..      16      64 ..      10      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHHHHHHHH CS
        COG5  68 kslssvlselksslesLsasyerlkskvlepyeeaeklqsalkrlhqtl 116
                 +  +++ + l+ ++ +++a +++l+  ++e+ +e+e+l++a + ++ t+
  CTQ27236.1  16 AAIRQMKQALRAQIGDVQAVFDKLSARISERLQEIETLKAAGQEVWPTV 64 
                 45567999**********************************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      718  (0.0400469); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 3441.09
//
Query:       CTQ27237.1  [L=271]
Description: type II HAD phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-51  176.1   0.0    1.2e-51  176.0   0.0    1.0  1  Hydrolase_3  haloacid dehalogenase-like hydrolase
    1.8e-14   53.9   0.0    4.2e-10   39.6   0.0    2.2  2  S6PP         Sucrose-6F-phosphate phosphohydrolase
    1.3e-06   28.9   0.7     0.0032   17.8   0.0    3.2  3  Hydrolase    haloacid dehalogenase-like hydrolase
    0.00014   22.4   0.0       0.26   11.7   0.0    2.7  2  HAD          haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
        0.1   12.6   0.3       0.76    9.8   0.0    2.4  3  HAD_2        Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.0   0.0   3.2e-55   1.2e-51       1     255 []       6     259 ..       6     259 .. 0.93

  Alignments for each domain:
  == domain 1  score: 176.0 bits;  conditional E-value: 3.2e-55
                  EEEEIIIIIS-TTS---.HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEEECTTTEEEEE--B-HHHHHHHH.HHHHHTTC CS
  Hydrolase_3   1 ialDlDGTLlnsdkkis.ektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGaliddekgkilykstiskedvkeii.kllkennv 96 
                  i++D+DGT+ln+ k+++ ++  + +++l+++gi++v+A+G++++++++++ e+  +  ++a NGal+ +e+gk l++ ++++ + + +i +llk+ ++
   CTQ27237.1   6 IVTDMDGTFLNDAKQYDrPRFLAQFAQLRQQGIEFVVASGNQYYQLISFFPEIREQISFVAENGALV-YEHGKQLFHGELTRHESQVVIgELLKDPQL 102
                  89*************999*************************************************.99999999999996666655517777777* PP

                  EEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHHHHHH CS
  Hydrolase_3  97 eillytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelksklnklltitssskgyleimpkgvsKgtalkk 194
                  +++ ++ +++yv++k    + + e ++++ ++ +  s+    d++++k+ +   ++++ +l+++l   l   ++ ++s+ g+++++ +g +K++++++
   CTQ27237.1 103 NFVACGLQSAYVSDK--APDAFVELMSKHYHRLQRVSDYHAIDDTLFKFSLNLPDSEIPQLIDKLHVSLDGIMKPVTSGFGFVDLIIPGLHKANGISR 198
                  ***************..7777777777777777777777777889***************************************************** PP

                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVakal 255
                  l+k++++s+++++a+GD+ ND eML+ +++++Amgna +++k++A y t++nn dG ++++
   CTQ27237.1 199 LLKRWDLSPQQCVAIGDSGNDAEMLKLVKYAFAMGNAADSIKAIAGYATDDNNHDGALNVI 259
                  ********************************************************99887 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   2.7e-05     0.098       3      47 ..       4      49 ..       2      59 .. 0.85
   2 !   39.6   0.0   1.2e-13   4.2e-10     113     212 ..     142     238 ..     111     261 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.7e-05
                EEEEE-TBTTTB..S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HH CS
        S6PP  3 lllvsdLDntlv.dgdnealarlnelleaeerkdvllvfaTGRsld 47
                +++v+d+D+t++ d ++ +  r+ +   + +++ + +v+a+G ++ 
  CTQ27237.1  4 KVIVTDMDGTFLnDAKQYDRPRFLAQFAQLRQQGIEFVVASGNQYY 49
                69**********77777788889888888999*********98765 PP

  == domain 2  score: 39.6 bits;  conditional E-value: 1.2e-13
                 GG-BTTBEEEEE-TTS-THHHHHHHHHHHTTTS-EEEEEETTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE-TT--H CS
        S6PP 113 eeqrehKvSyfvdkekaaevlkeleqlLekreldvkviyssgkdlDvlPkraskgeAlryLakkleleleqilvcGdsgnDeellignvlgVvVgnaqe 211
                  + + +K+S ++ +++ ++++++l+  L      +k + s   ++D++  +  k++ +  L+k+++l ++q +  GdsgnD+e+l+   ++  +gna  
  CTQ27237.1 142 IDDTLFKFSLNLPDSEIPQLIDKLHVSLDG---IMKPVTSGFGFVDLIIPGLHKANGISRLLKRWDLSPQQCVAIGDSGNDAEMLKLVKYAFAMGNAAD 237
                 46788**************99999999865...478999**********************************************99999999999987 PP

                 H CS
        S6PP 212 e 212
                  
  CTQ27237.1 238 S 238
                 6 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.4     0.023        83       1      16 [.       3      18 ..       3      25 .. 0.84
   2 ?    4.1   0.0     0.014        50     127     145 ..      30      48 ..      20      68 .. 0.87
   3 !   17.8   0.0   9.1e-07    0.0032     175     207 ..     192     224 ..     170     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.023
                SSEEEEESBTTTBCHH CS
                xxxxxxxxxxxxxxxx RF
   Hydrolase  1 iktvvfDkdGTLttge 16
                +k++v D+dGT ++  
  CTQ27237.1  3 VKVIVTDMDGTFLNDA 18
                69*********98765 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.014
                 HHHHHHTTEEEEEEESSEH CS
                 xxxxxxxxxxxxxxxxxxx RF
   Hydrolase 127 vasLkaagievvlltgdnp 145
                 +a+L+++gie v+++g++ 
  CTQ27237.1  30 FAQLRQQGIEFVVASGNQY 48 
                 689*************986 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 9.1e-07
                 SHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 175 spegkvaaireLqgkpeevamVGDgvnDaaala 207
                 + +g  +++++   +p++++++GD+ nDa++l+
  CTQ27237.1 192 KANGISRLLKRWDLSPQQCVAIGDSGNDAEMLK 224
                 5678889999999*******************8 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0012       4.3      85     111 ..      21      47 ..       6      52 .. 0.83
   2 !   11.7   0.0   7.3e-05      0.26     141     188 .]     179     224 ..     156     224 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
         HAD  85 lldpgalellaahraaGdrvvvvSggl 111
                 + +p +l+ +a+ r++G+++vv Sg+ 
  CTQ27237.1  21 YDRPRFLAQFAQLRQQGIEFVVASGNQ 47 
                 5789*********************85 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 7.3e-05
         HAD 141 elglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpllr 188
                 + g  + ++ g +k++ + +    + +++++  +va+GDs +D ++l+
  CTQ27237.1 179 GFGFVDLIIPGLHKANGISR--LLKRWDLSPQQCVAIGDSGNDAEMLK 224
                 55555666667788888888..88889999999*************96 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.3      0.37   1.3e+03       2      13 ..       7      18 ..       6      22 .. 0.81
   2 ?   -3.3   0.0       2.3   8.1e+03      90     109 ..      32      51 ..      27      64 .. 0.62
   3 ?    9.8   0.0   0.00021      0.76     138     167 ..     193     222 ..     189     232 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.37
       HAD_2  2 iFDlDgTlldte 13
                + D+DgT l+  
  CTQ27237.1  7 VTDMDGTFLNDA 18
                66******9976 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.3
       HAD_2  90 eLkeagyklgivTsksreav 109
                 +L+++g++  +++ ++  ++
  CTQ27237.1  32 QLRQQGIEFVVASGNQYYQL 51 
                 56667776666666655444 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00021
       HAD_2 138 peviekaleklklkkeeviyvGDsptDiea 167
                 ++ i ++l++ +l++++++ +GDs +D e 
  CTQ27237.1 193 ANGISRLLKRWDLSPQQCVAIGDSGNDAEM 222
                 78999**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2282.39
//
Query:       CTQ27238.1  [L=810]
Description: putative glycyl radical cofactor protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   7.8e-208  692.2   0.0   9.7e-208  691.9   0.0    1.0  1  PFL-like     Pyruvate formate lyase-like
    4.2e-30  104.4   0.0    1.1e-29  103.0   0.0    1.8  1  Gly_radical  Glycine radical
  ------ inclusion threshold ------
       0.02   13.3   0.0       0.26    9.6   0.0    2.1  2  DUF3029      Protein of unknown function (DUF3029)


Domain annotation for each model (and alignments):
>> PFL-like  Pyruvate formate lyase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  691.9   0.0  1.6e-211  9.7e-208       3     647 .]      11     671 ..       5     671 .. 0.98

  Alignments for each domain:
  == domain 1  score: 691.9 bits;  conditional E-value: 1.6e-211
                 HHHHHHHHCC.HT.TS.EEESHHHHHHHHHHHHCTTS-HHHHHHHHHHHHHHHS-----TT-SS---SSSSTTEEE--TTTTCHHHHTTTTTCCCSSSS CS
    PFL-like   3 erierlkknytlyeakpslelerarllteseketegepvdirrakalakilsnlplyIrddElIvGsqtkkprkraifPegsirmledeldtlaeread 101
                  ri+  k  + ++  kp +++erar++te+++++ ++p+++rra+ala+ l++++++I++dElIvG+q++++r+++ifPe++++++e+e+d la+r+  
  CTQ27238.1  11 ARIQAHKMAL-VHIVKPPVCTERARHYTEMYQRHLDKPIPVRRALALAHHLAERTIWIKHDELIVGNQASEVRAAPIFPEYTVSWIEKEIDDLADRPGA 108
                 5788888888.7779999********************************************************************************* PP

                 TEBEECHHHHHHHHHHHHHTTTSHHHHHHHHCHHTTHHHHTSTSEE--CHGGSSCEEEE--HHHHHTCHHHHHHHHHHHHHHHHCCTTTCCHHHHHHHH CS
    PFL-like 102 gfeideeekkilreifpyWkgktvnegvfdayteetkaaresgiitvglpdasgrGhiipdyervlkyGldglieeikeklakldlddpeaiekaefyk 200
                 gf ++ee k++l+ ++p+W+g+tv+++++ ++t+e+ka++++gii+ + +++sg +h++++y+ +l++Gldg+ +++ e+ ++++l+  e+++ ++f+k
  CTQ27238.1 109 GFSVSEENKRVLHAVCPWWRGQTVQDRCYGMFTDEQKALLATGIIKAEGNMTSGDAHLAVNYPLLLEKGLDGMRAKVAERRSRINLTVLEDLHGEQFLK 207
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHTTTS--SSHHHHHHHHHHHHHHHHHHSSCCEEE-BSHHHHTHHHHHHHHH.TTS CS
    PFL-like 201 aviisleavieyaeryarlaeelaeqetdpkrkaeLleiaevcgrvpskpaetfqEAiQlvwfvhlalvkesngaamslgRldqylypyyekDle.eGr 298
                 a+ i+leav+++ +r+a+la+e+a +e+ ++r++eLl+iae+c+ ++++p++tf++A+Ql++f++l+l++esng+++s+gR+dqylypyy +D+e + +
  CTQ27238.1 208 AIDIVLEAVSDHSKRFAALAREMATAESRETRRHELLTIAENCDVIAHEPPKTFWQALQLCYFIQLILQIESNGHSVSFGRMDQYLYPYYRRDVElQQS 306
                 ***********************************************************************************************8888 PP

                 S-HHHHHHHHHHHHHHHTTB-----HHHHCCCTTT----EEEEESB-...TTSSB---HHHHHHHHHHHHH--SSSEEEEEE-TTS-HHHHHHHHHHHH CS
    PFL-like 299 lteeeaqelidclwlklrevrklrseeyaelfagydpfqnltvGGqn...edGrdavnelsyliLealenlklpePnlsvrvskklpeeflkkaaevsr 394
                 l++e+a+el++++wlkl ev+k+rs +++++ ag++ +qn+t+GGqn    + +davn+lsy+iLe++ +l++++Pnlsvr++++++++fl+ +++v+r
  CTQ27238.1 307 LDREQAIELLHSCWLKLLEVNKIRSGSHSKASAGSPLYQNVTIGGQNlvdGKPQDAVNPLSYAILESCGRLRSTQPNLSVRYHAGMSNDFLDACVQVIR 405
                 **********************************777**********9667779********************************************* PP

                 TTS--CEEEEHHHHHHHHHHTT--HHHHHTEEEETTTEEEECCCEES-S..SEEEECHHHHHHHHTTTCETTTTCB-S-----GG..G--SHHHHHHHH CS
    PFL-like 395 kGlgspayenddviipallnrgvsledArdyaiaGCvepqipGkeeqff..aarinlakaLelalnnGrdektgkqvgpktgdvt..efksyeelmeaf 489
                  G+g+pa+ nd+++ip++++ g++ +dA dya++GC+e+ + Gk  + +  + +in+a++++ +l++Grd  +g+ + p+   ++  +f++++++ + +
  CTQ27238.1 406 CGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKWGYRCtgMSFINFARVMLATLEGGRDATSGQVFLPQEHALSkgNFANFDQVLADW 504
                 ***************************************99888655559999**************************88888779************ PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHTSTTHHHHT--GGGT-SSEECEEEEEE-HHHHHHHHHHHHHHHTTSTSS-HHHHHHHHHTTTTT-. CS
    PFL-like 490 kkqleylvklyvealniihymhdkyapepllsalvddciergkdlgegGarynfsgpqgvGlanvaDSLsAIkklVFddkkvtleeLkealaanFege. 587
                 + q++y+++ ++e + +++ m ++ +++ l+salvddcier k++++gGa+y++    +vG+an+++SL+A+kklVFd+  +  +eL +ala +F+g  
  CTQ27238.1 505 DRQIRYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGIANLGNSLAAVKKLVFDQGAIGQQELAKALAEDFDGLt 603
                 ************************************************************************************************977 PP

                 .HHHHHHHHH.S--TTSS-HHHHHHHHHHHHHHHHHHCTSB-TT......SCEEEEEE--TTTHHHHH CS
    PFL-like 588 .eelrqllln.aPkYGndddevDeiakevvetfaeevkkyknyr......ggkftaslltissnvpyg 647
                  e+lrq+l+n aPkYGnddd vD++ ++ ++t+++e+k+y+n+r      gg+++a++ +is+nvp+g
  CTQ27238.1 604 hEQLRQRLINgAPKYGNDDDSVDQLLARAYQTYIDELKQYHNPRygrgpiGGNYYAGTSSISANVPFG 671
                 7******************************************9999********************8 PP

>> Gly_radical  Glycine radical
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   1.9e-33   1.1e-29       2     105 ..     688     791 ..     687     792 .. 0.97

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 1.9e-33
                  TSTTSHHCCHHHCHCHHCCCCCCTSECGCETTEETTECCCCHHHHHHHCC-CCCCCCHHCCCCC..CT-SECEEEEETCCCHCCCCCSCGGGCCEEEE CS
  Gly_radical   2 apganpmegrdkegplaslnSvakldyevaldgislnlkavpdalgkeeeerienlatlldgyf..eggfhlnvnvvsretLldAqehpekypqltiR 97 
                  a+ga+p++g+d+ gp+a+++Sv+kl+    l+g++ln+k++p++l  e+e++ ++l  ll+++f  ++g+h+++n+vsr+tLl+A +hp++y++l++R
   CTQ27238.1 688 AEGASPASGTDHLGPTAVISSVGKLPTGAILGGVLLNQKLNPSTL--ENESDKQKLMVLLRTFFevHKGWHIQYNIVSRDTLLEAKKHPDQYRDLVVR 783
                  79*******************************************..*****************555******************************* PP

                  SSSSEEEC CS
  Gly_radical  98 VsGYavnF 105
                  V+GY++ F
   CTQ27238.1 784 VAGYSAFF 791
                  ******99 PP

>> DUF3029  Protein of unknown function (DUF3029)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.018   1.1e+02      61     114 ..     248     300 ..     243     320 .. 0.71
   2 ?    9.6   0.0   4.3e-05      0.26     149     205 ..     367     423 ..     359     444 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.018
     DUF3029  61 kGsefLelepakdldealnaLlilykhvPsv..tslPVylGqldellepfveelsd 114
                 + ++ +  ep+k++++al+    + + +  +   +  V  G++d+ l p+ ++  d
  CTQ27238.1 248 ENCDVIAHEPPKTFWQALQL-CYFIQLILQIesNGHSVSFGRMDQYLYPYYRR--D 300
                 567777889********975.444444444411346899***********843..3 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 4.3e-05
     DUF3029 149 grliLkvekelkqavPNltlkydeeitpddllrkavkti.lecakPsiaNhkllkkel 205
                 +  iL+    l+++ PNl+++y++   ++d+l ++v+ i +  + P++ N++++  e+
  CTQ27238.1 367 SYAILESCGRLRSTQPNLSVRYHAG-MSNDFLDACVQVIrCGFGMPAFNNDEIVIPEF 423
                 668999999**************98.678899999997657889*******9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.38
# Mc/sec: 6417.18
//
Query:       CTQ27239.1  [L=299]
Description: putative AdoMet-dependent glycyl radical activating enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-32  111.0   0.0    1.4e-31  110.1   0.0    1.4  1  Radical_SAM   Radical SAM superfamily
    4.2e-11   43.3   0.1      3e-10   40.5   0.1    2.0  1  Fer4_12       4Fe-4S single cluster domain
    0.00016   21.8   1.5      0.049   13.8   1.5    2.3  1  Fer4_14       4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.011   16.3   0.4      0.024   15.1   0.4    1.7  1  Fer4_13       4Fe-4S single cluster domain of Ferredoxin I
       0.15   11.4   0.0       0.28   10.6   0.0    1.4  1  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.0     4e-35   1.4e-31       1     159 [.      19     229 ..      19     235 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.1 bits;  conditional E-value: 4e-35
                  EEEESEESS--TTTSCCTT.........................................................HHHHHHHHHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxx.........................................................xxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpet.........................................................vrregrgrslsveeileevkel 41 
                  vv+++gC+l+C++C++pe+                                                          + +++g+++sveei++ v + 
   CTQ27239.1  19 VVFLKGCSLGCRWCQNPESrarsedllydsrlclpgcelcqqaapavitrtldgliihrqnvndshiaalrdccptTALTVCGEEKSVEEIMATVLRD 116
                  6899********************************************************************************************** PP

                  H.HHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHH CS
                  x.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  42 k.aekg.vkevilgggepllypdfvellerlaklavpgiritvetngtlpdeeklerllelgvdrvslgleaaddekvlklmnrghtfeevlealekl 137
                  k ++++ +++++l+ggep+++p ++++l+++++   +gi+++vet+ ++p ++++e  l+   d +  +l+++d+ ++l+++ + ++  +vl++l++l
   CTQ27239.1 117 KpFYDRsGGGITLSGGEPFMNPTLAQALFEASHQ--AGIHTAVETCLHVP-WKYIEPSLPFV-DLFLADLKHVDEAVFLQWT-D-GSARRVLDNLQRL 208
                  **99999***************************..7*************.*********88.*******************.6.9************ PP

                  HHTTSETEEEEEEEBTTTSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 138 reagikrvvdrivglpGendee 159
                  ++ag k  ++r++++ G+n +e
   CTQ27239.1 209 AQAGKK-MIIRVPLIQGFNASE 229
                  ****99.************998 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1   8.3e-14     3e-10       2      84 ..      12     153 ..      11     165 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 8.3e-14
     Fer4_12   2 nGeGvrlslfvsgCnlsCkgCfnketwsfk...........................................................sgkeftkell 41 
                 +G+G+r+++f++gC+l C+ C n+e +  +                                                           ++++  +e++
  CTQ27239.1  12 DGPGIRTVVFLKGCSLGCRWCQNPESRARSedllydsrlclpgcelcqqaapavitrtldgliihrqnvndshiaalrdccpttaltvcGEEKSVEEIM 110
                 7**************************666666666677777777777777777777777888888888888888888888888888876666668888 PP

     Fer4_12  42 eeiiedlk..kesiegltllGGEPllpenaeallelvkevkeekp 84 
                 + +++d +  ++s  g+tl+GGEP++  n    + l++   ++++
  CTQ27239.1 111 ATVLRDKPfyDRSGGGITLSGGEPFM--NPTLAQALFEASHQAGI 153
                 88887755336888************..99888888888777766 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   1.5   1.4e-05     0.049       5      67 ..      22     141 ..      18     162 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
     Fer4_14   5 lsgCnlsCk...........................................................gCdnketwkselgkpqteelleqilkdlkks 44 
                 l gC+l C+                                                            C  +++     +++++ee++ ++l+d+  +
  CTQ27239.1  22 LKGCSLGCRwcqnpesrarsedllydsrlclpgcelcqqaapavitrtldgliihrqnvndshiaalrDCCPTTALTVCGEEKSVEEIMATVLRDKPFY 120
                 47788888877777777777777777777777777777777777777777777777777777777777677777788899999**********988777 PP

     Fer4_14  45 eikiqglvltGGePLhyenkkel 67 
                 + +  g++l+GGeP+  +n +  
  CTQ27239.1 121 DRSGGGITLSGGEPF--MNPTLA 141
                 777899*********..444444 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.4   6.8e-06     0.024       8      58 .]      54      99 ..      47      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.8e-06
     Fer4_13  8 acgaCvelaPdvFeeddeggasvvaeqptseeekadaeeAadaCPvesIgv 58
                +c++C ++aP v  +  +g   ++++q++++ ++a ++   d+CP+ + +v
  CTQ27239.1 54 GCELCQQAAPAVITRTLDGL--IIHRQNVNDSHIAALR---DCCPTTALTV 99
                7***************9965..89*******8877776...6999999875 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.9e-05      0.28      25      67 ..     194     236 ..     179     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.9e-05
                   --EETTTHHHHHHHHHHTT-EEEEEGGGEET--SSHHHHHHHH CS
  G3P_antiterm  25 legdilnlkeiveklkkagkkvfvhiDlieGlskdeaaveflk 67 
                   ++g+  ++ + +++l +agkk+++ + li+G+++ ea +  ++
    CTQ27239.1 194 TDGSARRVLDNLQRLAQAGKKMIIRVPLIQGFNASEADIAAIT 236
                   456777888999********************99998776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2101.93
//
Query:       CTQ27240.1  [L=251]
Description: molybdopterin synthase sulfurylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-63  211.8   0.2    1.1e-62  211.5   0.2    1.0  1  ThiF             ThiF family
      0.002   18.4   0.9      0.017   15.4   1.0    2.1  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.016   15.2   0.0       0.03   14.4   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
      0.017   15.5   0.1       0.03   14.8   0.1    1.4  1  NAD_binding_7    Putative NAD(P)-binding
      0.062   12.9   0.0      0.081   12.5   0.0    1.2  1  DAO              FAD dependent oxidoreductase
      0.069   12.4   0.0      0.096   12.0   0.0    1.2  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
        0.1   12.2   0.5       0.19   11.4   0.5    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA
       0.12   11.6   0.3       0.16   11.2   0.3    1.2  1  FAD_binding_3    FAD binding domain
       0.12   12.6   0.2       0.85    9.9   0.0    2.0  2  TrkA_N           TrkA-N domain
       0.15   11.4   0.2       0.33   10.3   0.0    1.6  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
        0.2   11.5   0.0       0.29   11.0   0.0    1.2  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.5   0.2     7e-66   1.1e-62       1     241 [.      13     246 ..      13     249 .. 0.95

  Alignments for each domain:
  == domain 1  score: 211.5 bits;  conditional E-value: 7e-66
                 THHHHHH..HHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-C CS
                 xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   1 ysrqlal..lgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteri 97 
                 y+rq++l  ++ dgqe+L++++vl+vG+GglG+ ++++La++Gvg+ltl D+D+++lsNl+Rq l++++  G+pK+++a+eal++inp+v ++++++ +
  CTQ27240.1  13 YNRQIVLrgFDFDGQERLKAARVLVVGLGGLGCAAAQYLAAAGVGQLTLLDFDTVSLSNLQRQTLHSDATLGQPKVDSAREALARINPHVRLVPLNALL 111
                 789998887888*************************************************************************************** PP

                 CGCCS-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEE.CCS-ECTSS-TGGS.EECCCCEEHHHHHHCTE-B-HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  98 tdetvleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviip.gktgcyeCldpsstedptekkvplctsiagnipaiatttav 195
                 ++ + l   + ++DlV+d++Dn+++r  +n  c ++++pl+++++ ++egq+ v+ + + ++cy+Cl         ++++ +c   ag   ++a++++ 
  CTQ27240.1 112 DEAA-LAAQIADHDLVLDCTDNVAIRNQLNVGCFQHKTPLVSGAAIRMEGQISVFTYqDGEPCYRCLS-----RLFGENALTC-VEAG---VMAPLVGT 200
                 8876.6699**********************************************5559********5.....5778889999.99**...******** PP

                 HHHHHHHHHHHHHTTBCGGGCCEEEECCTTTTEEEEECCEEEEEEC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 196 vaglaalellkllsgkeklenslltqvdllesrfenvelerakksk 241
                 +++l+a e++kllsg  + +  +   +d+ +++f++++l r+++++
  CTQ27240.1 201 IGSLQAMEAIKLLSGYGTPASGKIVIYDAMTCQFREMRLMRHPQCE 246
                 **************99999999999**************9999663 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.0   1.1e-05     0.017       1      95 [.      35     149 ..      35     169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.....................TTTCEEEEE--TTTHHHHHHHHHTTSSEE CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka.....................lgvrfeaialdaenyeavLaallkegdlv 73 
                      vl++G G+ G a+a++la+ +    ++t+ d++  +l +l  ++                      ++ +  + l+a  +ea Laa ++++dlv
       CTQ27240.1  35 VLVVGLGGLGCAAAQYLAAAGVG--QLTLLDFDTVSLSNLQRQTlhsdatlgqpkvdsarealarINPHVRLVPLNALLDEAALAAQIADHDLV 126
                      89*****************9976..************9999999999**************9999888999999999999999*********** PP

                      EE-SSGG.GHHHHHHHHHHHT-E CS
  Sacchrp_dh_NADP  74 vnlsppi.ssldvlkaCietgvh 95 
                      ++++ ++   +++   C ++++ 
       CTQ27240.1 127 LDCTDNVaIRNQLNVGCFQHKTP 149
                      ***99985455555556666665 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.9e-05      0.03       8      43 ..      28      63 ..      24      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
                  S..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEE CS
  Shikimate_DH  8 eslkekkvlliGaGemaelvakhLlakgvkkvvvaN 43
                  e+lk ++vl++G G ++  +a++L+a+gv +++ + 
    CTQ27240.1 28 ERLKAARVLVVGLGGLGCAAAQYLAAAGVGQLTLLD 63
                  4799*************************9998765 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.8e-05      0.03       5      82 ..      30     143 ..      28     162 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleag.akvtvvapevkeele............................elvklaeee..............lek 57 
                    lk  +vlvvG G ++   ++ l++ag  ++t+++ ++ + ++                                    +              l +
     CTQ27240.1  30 LKAARVLVVGLGGLGCAAAQYLAAAGvGQLTLLDFDTVSLSNlqrqtlhsdatlgqpkvdsarealarinP-------HvrlvplnalldeaaLAA 118
                    7889**********************779***998853333343444445555555444444443333331.......033333333333333577 PP

  NAD_binding_7  58 dlegadlviaatddrelneriaeaa 82 
                    ++++ dlv+ +td+ ++++++   +
     CTQ27240.1 119 QIADHDLVLDCTDNVAIRNQLNVGC 143
                    7*************99999987777 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     5e-05     0.081       1      27 [.      34      63 ..      34     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5e-05
                EEEEECTSHHHHHHHHHHHHTT...EEEEE CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...Vtlle 27
                +v+++G G  G+++A +La++g    tll+
  CTQ27240.1 34 RVLVVGLGGLGCAAAQYLAAAGvgqLTLLD 63
                59******************9877999998 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.9e-05     0.096      26      95 ..      30     126 ..      12     134 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.9e-05
                  B---EEEEESTSHHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHH..TTTCECEE.........................HCHHHHHHHHHHHH-SEE CS
  AlaDh_PNT_C  26 vepakvlviGgGvaGlqAiatakglga.kVtvlDvrparleqles..lgakfvev.........................lksqeellaeavkeadvv 95 
                   ++a+vlv+G G  G +A++  ++ g  + t+lD ++  l +l+   l++   ++                            +e++la ++++ d+v
   CTQ27240.1  30 LKAARVLVVGLGGLGCAAAQYLAAAGVgQLTLLDFDTVSLSNLQRqtLHSD-ATLgqpkvdsarealarinphvrlvplnALLDEAALAAQIADHDLV 126
                  689****************9866666438999****999999998654443.4446677777777777777777777776666777777777777776 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   0.00012      0.19       1      44 [.      35      80 ..      35     105 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                EEEES-SHHHHHHHHHHHHHTHC.EEEE-SCH.HHHHHHHHCEEEE CS
        ApbA  1 iailGaGaiGsllaakLakagad.vtlilrsr.rlealkknGlrlt 44
                ++++G+G++G+  a +La+ag    tl++ +   l +l+++ l+ +
  CTQ27240.1 35 VLVVGLGGLGCAAAQYLAAAGVGqLTLLDFDTvSLSNLQRQTLHSD 80
                68*****************776548888888877777777766555 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3    0.0001      0.16       3      29 ..      34      61 ..      32      83 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
                   EEEEE--SHHHHHHHHHHHHTTHH.EEE CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvr.vvl 29
                    Vl+VG G  G  +a+ L+ aGv   +l
     CTQ27240.1 34 RVLVVGLGGLGCAAAQYLAAAGVGqLTL 61
                   7**********************73444 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00052      0.85       1      42 [.      35      77 ..      35      86 .. 0.84
   2 ?   -0.0   0.1      0.63     1e+03      32      72 ..      93     132 ..      85     141 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00052
                EEEES-SHHHHHHHHHHHHTT.EEEEEEESSHHHHHHHHHTTS CS
      TrkA_N  1 iiiiGlGrvGrslaeeLsegg.kdvvvidkdeerveelreegl 42
                ++++GlG +G + a++L ++g  + ++ d d   + +l+++ l
  CTQ27240.1 35 VLVVGLGGLGCAAAQYLAAAGvGQLTLLDFDTVSLSNLQRQTL 77
                68*****************55567*******999999987664 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.63
                 HHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSS CS
      TrkA_N  32 erveelreeglevvvgdatdeevLeeagiekadaviaatgd 72 
                 e+++++    ++ v  +a  +e+  +a+i++ d+v+ +t++
  CTQ27240.1  93 EALARIN-PHVRLVPLNALLDEAALAAQIADHDLVLDCTDN 132
                 4444433.235678888888999999999999999988887 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0002      0.33      31      60 ..      27      56 ..       7      85 .. 0.80
   2 ?   -2.3   0.1       1.4   2.4e+03     130     146 ..     109     125 ..      90     137 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0002
                  BS-GTTSEEEEES-SHHHHHHHHHHHHTT- CS
  2-Hacid_dh_C 31 gkelsgktvGiiGlGrIGqavakrlkafgm 60
                  +++l+  +v ++GlG +G a+a++l+a g+
    CTQ27240.1 27 QERLKAARVLVVGLGGLGCAAAQYLAAAGV 56
                  458999********************9998 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
                   GGB-HHHHHHHHHTTSC CS
  2-Hacid_dh_C 130 glvdeeaLleaLksgki 146
                   +l+de+aL++ + ++ +
    CTQ27240.1 109 ALLDEAALAAQIADHDL 125
                   67788888887777655 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018      0.29       2      72 ..      35     103 ..      34     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
                 EEEE--SCCHHHHHHHHHHTT-.EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES- CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagl.eVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttd 72 
                 v v+G G +G   a+ +a+ag+ + +l+d ++ +l + +++     ++ +  g+ k +++++alari+++  
  CTQ27240.1  35 VLVVGLGGLGCAAAQYLAAAGVgQLTLLDFDTVSLSNLQRQTL---HSDATLGQPKVDSAREALARINPHVR 103
                 78******************98689******999998876654...45566677777789999999987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2005.76
//
Query:       CTQ27241.1  [L=411]
Description: molybdopterin biosynthesis protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-47  159.8   0.4    5.6e-47  159.4   0.4    1.2  1  MoeA_N         MoeA N-terminal region (domain I and II)
    7.2e-28   97.1   0.0    1.1e-27   96.5   0.0    1.3  1  MoCF_biosynth  Probable molybdopterin binding domain
    1.5e-21   76.3   0.0    3.7e-21   75.1   0.0    1.7  1  MoeA_C         MoeA C-terminal region (domain IV)


Domain annotation for each model (and alignments):
>> MoeA_N  MoeA N-terminal region (domain I and II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.4   9.4e-51   5.6e-47       2     157 .]       9     168 ..       8     168 .. 0.90

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 9.4e-51
                 -HHHHHHHHHHH-.HH-EEE.EEGGCG-TT-BBSS-EE-SS-BSSS-EESSSEEEEEEBTTB--..............-S---TT-.EEEE-TTSB--T CS
      MoeA_N   2 sveealaiilaal.eleeee.vplaaealgrvlaedvvApedvPpfdnSamDGYAvraeagsgaseeep...saageeperllpgg.avrimTGaplPe 94 
                 +++ ala++l+++ +l+ +e vpl ++a  rv+a d+v+p dvP+fdn+amDGYAvr ++ ++         + ag++ +   p g ++rimTGap+Pe
  CTQ27241.1   9 PLDTALAQMLDRItPLNATEtVPL-LQAFSRVSAHDIVSPLDVPGFDNAAMDGYAVRLNDLRDGAALPVagkAFAGQPFNDAWPAGtCIRIMTGAPVPE 106
                 7899*********88877777***.9******************************9999998755444899999999999999999************ PP

                 T--EEEEGGGE..E....EETTE...S--STTTTEE-TTSSB-TTSEEE-TTBB--CCCHHHHHHCT CS
      MoeA_N  95 gadaVvpvEdte.eeeaketvev...kavkpgenvrraGedikaGevllragtrltpaeigllasvG 157
                 g+daVv++E+te +   ++   v   ++vk+g+++rr+Gedi+ G+v+++agt lt ae+ +las+G
  CTQ27241.1 107 GCDAVVMQEETEqT---EAG--VrfiAPVKAGQHIRRRGEDIAHGAVVFPAGTPLTVAELPVLASLG 168
                 **********9522...222..13469**************************************98 PP

>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   1.8e-31   1.1e-27       1     143 [.     181     317 ..     181     318 .. 0.95

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 1.8e-31
                    EEEEE-HHHH.......TTSSGBHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHHHHHHHTSSEEEEESS-SSSTT--HHHHHHHHHSEE-HHH CS
  MoCF_biosynth   1 avitvGdell.......sgkieDtngpllaellkelgvevskytvvpDdeeeikeallaaleeadviittGGtGptpdDvtpealaklfekelegf 89 
                    av ++Gdel         g+i+Dtn   +  +l++lg+ev++++++pDd++++++a+++a ++adv+i++GG+++++ D+t+ +l++l+e      
     CTQ27241.1 181 AVFSTGDELQlpgqplgDGQIYDTNRLAVHLMLQQLGYEVINLGIIPDDPAKLRDAFIDADQQADVVISSGGVSVGEADYTKTILEELGE------ 270
                    699******************************************************9997888**************************...... PP

                    HHHHHHHHHHHCCTTSHGGGGGGE.EETTEEE.EE-SSHHHHHHHHHHHHHGGHH CS
  MoCF_biosynth  90 eeafrrvslkpgkpvgvapgailsravgktii.gLPGspkavkealeeillpale 143
                     + f++++ kpgkp+ ++++   s+    + + gLPG+p+++++++  +++p l 
     CTQ27241.1 271 -IGFWKLAIKPGKPFAFGKL---SS----SWFcGLPGNPVSATVTFCQLVQPLLA 317
                    .9**************9999...64....4555*****************99986 PP

>> MoeA_C  MoeA C-terminal region (domain IV)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   6.2e-25   3.7e-21       1      72 []     332     404 ..     332     404 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 6.2e-25
                 EEEESS-EE--SSS-EEEEEEEE.S-S-EEEEEE-S---TT-GGGCTT--EEEEE-TT--EE-TT-EEEEEE- CS
      MoeA_C   1 karlaedlksdpgrreflRvilt.eedgeyvaeptgkqgSglLsslaeAnglivipegtegleaGeeVevill 72 
                 ++r+a++lk+ pgr +f+R+il+ ++dge+v+  tg+qgS+++ss++  n++iv+++++  +eaGe+Vev+++
  CTQ27241.1 332 RVRAATRLKKSPGRLDFQRGILQrNPDGELVVNTTGHQGSHIFSSFSLGNCFIVLERERGHVEAGEWVEVEPF 404
                 689*******************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3281.67
//
Query:       CTQ27242.1  [L=313]
Description: isoaspartyl dipeptidase with L-asparaginase activity [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.3e-118  393.2   1.0   7.1e-118  393.1   1.0    1.0  1  Asparaginase_2  Asparaginase


Domain annotation for each model (and alignments):
>> Asparaginase_2  Asparaginase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.1   1.0    4e-122  7.1e-118       2     306 .]       5     311 ..       4     311 .. 0.96

  Alignments for each domain:
  == domain 1  score: 393.1 bits;  conditional E-value: 4e-122
                     EEEEEEEEESE-G...-HHHHHHHHHCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHCTCCCSSSTTSS-BTTS---EEEEEEETTTTEEEEEEE CS
  Asparaginase_2   2 vlvihGGAgsilk...tkereeavrkalkealeagykvLkeggsaldaVeaavrllEddplfnaGkGsvltedgeveldAsimdgktlraGaVag 93 
                     v++ihGGAg+i++   t+ere+++ +al++++e+g+k+L++g+saldaV++avrllE++plfnaG+G+v+t+d ++eldA++mdg +l+aGaVag
      CTQ27242.1   5 VIAIHGGAGAISRaqmTPEREREYVAALSTIVESGQKMLAAGASALDAVTEAVRLLEECPLFNAGMGAVFTRDQTHELDACVMDGYSLQAGAVAG 99 
                     79***********999******************************************************************************* PP

                     ESSBS-HHHHHHHHHHHCS-SEEEHHHHHHHHHHTT-----CGGG--HHHHHHHHHHHHCCCHS..B-S-BS-TTT..TT---EEEEEE-TTS-E CS
  Asparaginase_2  94 vkrvknpislArlvmeksehvlLvgegAeefareqglelvdeesllteerlkelekakkekaekkeaknvsekelk..aklgTvGaValDsegnl 186
                     vk+ +np+ +Arlv+eks+hvlL+gegAe+fa ++g+ +vd++ ++t erl +l++ak+  +      ++++++l+  +k+gTvGaValD +gnl
      CTQ27242.1 100 VKHLRNPVLAARLVLEKSPHVLLIGEGAENFAISRGMARVDNDLFSTPERLLQLQEAKAGGEI---ILDHHAAPLDerQKMGTVGAVALDLAGNL 191
                     *********************************************************888777...444444444446***************** PP

                     EEEEEE--STTB-TTEE-STTSTTTSEEEETTTEEEEEEE-HHHHCCTTHHHHHHHHHHTTT--HHHHHHHHHHCHHHHTTT-EEEEEEETTS-E CS
  Asparaginase_2 187 AaaTSTgGltnklvGRvGDspiiGaGtYAdnkvgAvsaTGkGeeiirellaadivalmeykglsleeAaekvieeklkrvkgsgGviavdkkGev 281
                     AaaTSTgG+tnkl+GRvGDsp++GaG+YA+n+++Avs+TG+Ge+++r+l+a+di+almey  lsl +A+e+v++ekl++++gsgG+iavd++G+v
      CTQ27242.1 192 AAATSTGGMTNKLPGRVGDSPLPGAGCYANNASVAVSCTGTGEVFMRTLAAYDIAALMEYGQLSLYSACERVVMEKLPALGGSGGLIAVDREGNV 286
                     ************************************************************99********************************* PP

                     EEEECSCCCEEEEEETTS--EEEEE CS
  Asparaginase_2 282 aaefnsegmlrayakedelkevliy 306
                     +++fnsegm+ra+  + ++ ++ iy
      CTQ27242.1 287 VLPFNSEGMYRAWCYAGDTPTIGIY 311
                     *************999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2693.91
//
Query:       CTQ27243.1  [L=619]
Description: putative peptide transport fused subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-59  200.9   0.0    9.7e-31  107.1   0.0    2.2  2  ABC_tran         ABC transporter
    3.9e-19   68.9   0.1    1.3e-08   35.2   0.0    2.4  2  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
    8.5e-12   45.0   0.0    2.2e-06   27.3   0.0    2.7  2  SMC_N            RecF/RecN/SMC N terminal domain
    1.8e-11   44.4   0.8    0.00058   20.2   0.0    3.5  2  AAA_22           AAA domain
    2.1e-09   38.0   2.8    0.00064   20.1   0.1    2.5  2  AAA_16           AAA ATPase domain
    4.4e-08   33.3   0.6     0.0022   17.9   0.0    4.1  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    2.5e-06   27.1   0.2      0.011   15.4   0.0    2.4  2  AAA_29           P-loop containing region of AAA domain
      1e-05   25.5   0.2      0.087   12.7   0.0    2.4  2  RsgA_GTPase      RsgA GTPase
    7.8e-05   22.5   0.1      0.012   15.4   0.0    2.8  3  IstB_IS21        IstB-like ATP binding protein
    0.00039   20.1   0.4       0.19   11.3   0.0    3.1  3  AAA_25           AAA domain
    0.00095   18.7   0.0       0.33   10.5   0.0    2.3  2  AAA_7            P-loop containing dynein motor region
     0.0012   18.3   0.0        1.6    8.1   0.0    3.1  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0012   19.3   0.2        3.7    8.0   0.0    3.3  2  AAA              ATPase family associated with various cellul
     0.0014   18.9   0.0        2.3    8.6   0.0    2.6  2  RNA_helicase     RNA helicase
     0.0019   18.2   0.2        1.1    9.2   0.1    2.5  2  AAA_5            AAA domain (dynein-related subfamily)
     0.0026   17.9   1.1        0.5   10.4   0.2    2.3  2  DUF87            Helicase HerA, central domain
     0.0033   17.2   0.3        1.7    8.3   0.2    2.7  2  AAA_30           AAA domain
     0.0039   17.1   0.6        2.4    8.0   0.0    2.3  2  APS_kinase       Adenylylsulphate kinase
     0.0053   16.5   0.0       0.91    9.2   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
     0.0069   15.7   0.1       0.96    8.7   0.1    2.5  2  Zeta_toxin       Zeta toxin
      0.007   16.1   0.0        2.8    7.6   0.0    2.4  2  AAA_24           AAA domain
     0.0083   16.7   0.0        6.4    7.3   0.0    2.4  2  AAA_18           AAA domain
     0.0083   15.2   0.1       0.12   11.3   0.0    2.1  2  DUF3987          Protein of unknown function (DUF3987)
  ------ inclusion threshold ------
       0.01   15.8   0.4        1.9    8.4   0.0    2.5  2  NACHT            NACHT domain
      0.013   14.8   0.0       0.92    8.8   0.0    2.5  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
       0.02   14.6   0.2          5    6.8   0.1    2.3  2  PRK              Phosphoribulokinase / Uridine kinase family
      0.028   13.8   1.3        1.1    8.6   0.3    2.5  2  AIG1             AIG1 family
      0.029   14.0   0.0        2.2    7.9   0.0    2.5  2  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
       0.03   14.5   0.3         14    5.9   0.0    2.7  2  AAA_33           AAA domain
      0.047   13.7   3.2       0.49   10.5   0.1    2.9  3  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
      0.067   13.2   0.1         17    5.4   0.0    2.3  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.08   11.8   0.5        8.2    5.2   0.0    2.2  2  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
       0.17   11.9   0.0       0.62   10.1   0.0    1.9  2  ResIII           Type III restriction enzyme, res subunit
       0.17   12.0   0.1         15    5.7   0.1    2.5  2  MMR_HSR1         50S ribosome-binding GTPase
       0.28   10.6   0.5          3    7.2   0.1    2.3  2  Pox_A32          Poxvirus A32 protein
        0.3   10.8   0.0         22    4.6   0.0    2.1  2  AAA_15           AAA ATPase domain
       0.64    9.5   2.8        7.5    6.0   0.1    2.6  2  Hpr_kinase_C     HPr Serine kinase C-terminal domain
        3.3    7.0   6.9        5.3    6.3   0.0    3.2  4  ATPase           KaiC


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   1.1e-28     5e-26       2     136 ..      34     197 ..      33     198 .. 0.90
   2 !  107.1   0.0   2.1e-33   9.7e-31       2     135 ..     338     487 ..     337     489 .. 0.95

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 1.1e-28
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE..............EET.TCEGGGB-HHHCCHCEEEE-SS..--S-TTSBHHHH.... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxx.xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx.... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGei..............lld.gkdlkeqeleslrkeigvlpqe..pqlfpeltvren.... 79 
                 +++s++l++ge++aivGe+G+GKS  + +l++ll+ ++ e+                  +++++ + +++  + +++++qe  ++l+p  t++e+    
  CTQ27243.1  34 RQLSFSLRRGETLAIVGESGSGKSVTALALMRLLDAASSEVnseglwlrrrnrqvI-AlNEQTDAEMRRVRGADLAMIFQEpmTSLNPVFTIGEQiaes 131
                 689**************************************888887777777642.224444557899999*********9999************** PP

                 ..........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ..........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                           e+ + ++k+l+++++++ +++ +++ p++LSgG++qrv++a+al ++p +l++DEpt
  CTQ27243.1 132 lrlhqglgreEALRAAKKMLDQVRIPQ-AEEMLSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPT 197
                 999999998777777***********9.88888999******************************9 PP

  == domain 2  score: 107.1 bits;  conditional E-value: 2.1e-33
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH..............HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx..............xx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren..............es 81 
                 ++vs++l +ge++ +vGe+G+GKSt  ++l++l++ + G+i++dg+ +++    +l+ lr++i++++q+  ++l+p+ tv+++              ++
  CTQ27243.1 338 EKVSFDLWPGETLSLVGESGCGKSTTGRALLRLVETQGGTITFDGQRIDTlagGKLQALRRNIQFIFQDpyASLDPRQTVGDSimeplrvhgllrgeAA 436
                 689******************************************************************999***********************9988 PP

                 HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135
                 +e+++ +l+++gl+    +++ + p+ +SgGq+qr+++aral+ +pk++++DE 
  CTQ27243.1 437 RERVAWLLKRVGLQP---EHAWRYPHAFSGGQRQRICIARALALNPKVVIADES 487
                 999*********999...4444679****************************7 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   4.5e-10   2.1e-07       1      32 [.     249     280 ..     249     299 .. 0.88
   2 !   35.2   0.0   2.8e-11   1.3e-08       1      34 [.     540     575 ..     540     591 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 4.5e-10
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrek 32 
                 vE+g+++++f++p+HPYT+ Ll++vprl + +
  CTQ27243.1 249 VETGSVEEIFRSPQHPYTQSLLAAVPRLGEMR 280
                 8**************************97655 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 2.8e-11
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd..k 34 
                 vE+gp++++f++p+HPYT++L+++vp  d++ +  +
  CTQ27243.1 540 VEIGPRRAVFENPQHPYTRKLMAAVPVADPGHRhpQ 575
                 8*****************************999544 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   4.6e-09   2.2e-06      26     211 ..      45     243 ..      33     251 .. 0.72
   2 !   14.6   0.0   3.6e-05     0.017      28     213 ..     351     535 ..     336     541 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 4.6e-09
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTT......TTCHCCCCCC--...BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakk......lrseklsdlihk...skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseyking 115
                   aivG+ GSGKs    A++ +L  +s++       lr+++ + +  +    +e ++v  a+++++f+++  +    ++ ++i  ++ ++ + +  + +
  CTQ27243.1  45 TLAIVGESGSGKSVTALALMRLLDAASSEVnseglwLRRRNRQVIALNeqtDAEMRRVRGADLAMIFQEPMTS---LNPVFTIGEQIAESLRLHQGLGR 140
                 458************99*999998665531222333677666666655666667789999*********9999...56667777777666664444433 PP

                 EEE-HHHHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
       SMC_N 116 kevtkkevsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemle 203
                  e   +  +++l +++i +          +LSgG ++ v++a+ +   +++pa l + De   aLD +  +++ +l+   +k+  + +i i+++ ++++
  CTQ27243.1 141 -EEALRAAKKMLDQVRIPQAeemlsryphQLSGGMRQRVMIAMAL---SCRPAVL-IADEPTTALDVTIQAQILQLIAVLQKEmaMGVIFITHDMGVVA 234
                 .3344555666666666655566666666********99999986...5788766.77********************777773366777888777776 PP

                 C-.SCEEEE CS
                 xx.xxxxxx RF
       SMC_N 204 ka.dklvgv 211
                 +  d+++ +
  CTQ27243.1 235 DIaDRVLVM 243
                 653554444 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.6e-05
                 EEEESTTSSHHHHHHHHHHHCTT..TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGer.sakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevse 125
                 ++vG+ G+GKs    A+l +  ++  + ++  ++++ l      k ++ + +++ +f+++ ++    +++ ++  ++++  + +  + g+ + ++ v+ 
  CTQ27243.1 351 SLVGESGCGKSTTGRALLRLVETQgGTITFDGQRIDTLAGG---KLQALRRNIQFIFQDPYAS---LDPRQTVGDSIMEPLRVHGLLRGEAA-RERVAW 442
                 68999999999999999666655523346667777777554...7777888999999998888...67778888888888887777777765.5789** PP

                 HHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 126 llesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgvtk 213
                 ll+++g+++e       ++SgG+++ + +a  +A++      +++ De  +aLD + ++++ +l+   + +    f+ is++  ++e+ ++ v v+ 
  CTQ27243.1 443 LLKRVGLQPEhawryphAFSGGQRQRICIARALALNPK----VVIADESVSALDVSIRAQIINLMLDLQREmgIAFLFISHDMAVVERISHRVAVMY 535
                 **********9999999*************99998643....6789*********99888887666444442589************9988888776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.2e-06   0.00058       7     128 ..      45     226 ..      40     231 .. 0.71
   2 !   19.1   0.1   2.6e-06    0.0012       8     127 ..     350     516 ..     347     520 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.2e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee........erpevvfvtlpsstsskdl.lrellralglelka.......................... 70 
                  l+++GesG+GK++++  l++ ld++++  +        ++++v+  + + + + + +   +l+ +++++  +                          
  CTQ27243.1  45 TLAIVGESGSGKSVTALALMRLLDAASSEVNseglwlrrRNRQVIALNEQTDAEMRRVrGADLAMIFQEPMTSlnpvftigeqiaeslrlhqglgreea 143
                 689********************9766655599****98888888999999998888856778888888777788888888888888888888888888 PP

      AAA_22  71 ......................erlsseellealeqalrarav............ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                                       +            ++l+  ++            +++li DE    l+   ++++l+ +  l++  +  + +i++
  CTQ27243.1 144 lraakkmldqvripqaeemlsrY-----------PHQLSGGMRqrvmiamalscrPAVLIADEPTTaLDvtiQAQILQLIAVLQK--EMAMGVIFI 226
                 88888888888555544443332...........333333333333344444445588888887776766555777777777777..777777766 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 2.6e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv.....fvtlpsstsskdllrellralglelka............................... 70 
                 l ++GesG+GK+t+ r ll+  +        + +++     +++  ++++++ l+r++  +++++  +                               
  CTQ27243.1 350 LSLVGESGCGKSTTGRALLRLVET-------QGGTItfdgqRIDTLAGGKLQALRRNIQFIFQDPYASldprqtvgdsimeplrvhgllrgeaarerva 441
                 679*****************9975.......455555688899999999**************999987777777777776666665555555555555 PP

      AAA_22  71 ............erlsseell.ealeqalrarav...........ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliL 127
                             ++   +++   +                     ++++i DE    l+   ++++++   +l+   + g+++++
  CTQ27243.1 442 wllkrvglqpehAWRYPHAFSgGQR--------QriciaralalnPKVVIADESVSaLDvsiRAQIINLMLDLQR--EMGIAFLF 516
                 5555533333332222222222222........122333333555666666666655555333666666666666..66666655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.5   7.3e-06    0.0034      10     143 ..      31     195 ..      27     226 .. 0.52
   2 !   20.1   0.1   1.4e-06   0.00064       2     106 ..     320     423 ..     319     505 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.3e-06
      AAA_16  10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekd......ggiflrgkcdql.....esa......................ipysalaqa 75 
                 ++++++  ++r+g  e + ++GesG+GKs  + +l+r l ++      +g++lr +++q      +++                       p  ++ ++
  CTQ27243.1  31 QAVRQLSFSLRRG--ETLAIVGESGSGKSVTALALMRLLDAAssevnsEGLWLRRRNRQVialneQTDaemrrvrgadlamifqepmtslNPVFTIGEQ 127
                 5555544456666..7899*************9999877777888998677777777777333321112222223333333333222222222222222 PP

      AAA_16  76 lareellrqlldeaesaeleawrekleeala.....................avpelagaea...srllellkrll.allsrderplvlvlDd 143
                 +a+                         +l+                      +p+++  ++   ++l   +++ +   ++   rp vl+ D+
  CTQ27243.1 128 IAE-------------------------SLRlhqglgreealraakkmldqvRIPQAEEMLSrypHQLSGGMRQRVmIAMALSCRPAVLIADE 195
                 222.........................11122222222223333333322223333333335666666666666654444445566666665 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 1.4e-06
      AAA_16   2 lvGReeeleqLlsalervrsgrp.....elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesael 94 
                 ++ R+  l+++++ +++v + +      e + l+GesG+GKs+  r+llr +e++ g +++ + ++     +++   +qal r + ++ + +++ + +l
  CTQ27243.1 320 FPVRGGLLNRVTREVHAVEKVSFdlwpgETLSLVGESGCGKSTTGRALLRLVETQ-GGTITFDGQRI---DTLAGgKLQAL-R-RNIQFIFQDPYA-SL 411
                 666777777777777777777777777899*******************888888.55555555555...22344466666.5.566666666444.45 PP

      AAA_16  95 eawrekleeala 106
                 ++ ++  ++ ++
  CTQ27243.1 412 DPRQTVGDSIME 423
                 555544444444 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.28   1.3e+02       3      29 ..      47      74 ..      46      92 .. 0.71
   2 !   17.9   0.0   4.7e-06    0.0022     233     302 ..     166     233 ..     111     234 .. 0.84
   3 ?    5.5   0.0     0.027        13       4      24 ..     352     372 ..     350     414 .. 0.73
   4 ?    2.9   0.0      0.17        80     234     302 ..     458     524 ..     446     525 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.28
      AAA_21  3 vliGpNgsGKSnLLdaldllarl.drdv 29
                +++G  gsGKS    al  l ++  ++v
  CTQ27243.1 47 AIVGESGSGKSVTALALMRLLDAaSSEV 74
                69*********88877766665444444 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 4.7e-06
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                  +++lS G+++   ++++ l+ ++  ++l+ DEp + L+  +++ +l+l+  l++     vi+ TH+  ++
  CTQ27243.1 166 YPHQLSGGMRQR-VMIAMALSCRP--AVLIADEPTTALDVTIQAQILQLIAVLQKeMAMGVIFITHDMGVV 233
                 57899*****99.66666666665..9***********************5555545688******98776 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.027
      AAA_21   4 liGpNgsGKSnLLdaldllar 24 
                 l+G  g+GKS+  +al  l  
  CTQ27243.1 352 LVGESGCGKSTTGRALLRLVE 372
                 89**************88732 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.17
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                 ++ +S G+++ ++++ al+  +   ++++ DE  + L+ ++ + ++ l+ +l+r  g+ +++ +H+  ++
  CTQ27243.1 458 PHAFSGGQRQRICIARALALNP---KVVIADESVSALDVSIRAQIINLMLDLQReMGIAFLFISHDMAVV 524
                 5667888888877777777766...899999999***************66666699********98776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.4e-05     0.011      17      50 ..      38      71 ..      30      77 .. 0.75
   2 !    9.3   0.0    0.0019      0.91      16      37 ..     341     362 ..     333     376 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.4e-05
      AAA_29 17 ieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                +++++ ++  ++G+sGsGKS    A++ lL +a+
  CTQ27243.1 38 FSLRRGETLAIVGESGSGKSVTALALMRLLDAAS 71
                4555444899**********77779999998877 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0019
      AAA_29  16 tieidlkgatlltGpsGsGKST 37 
                 ++++ + ++  l+G+sG GKST
  CTQ27243.1 341 SFDLWPGETLSLVGESGCGKST 362
                 55566666888**********9 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00018     0.087      72     130 ..      15      74 ..       3      79 .. 0.80
   2 !   10.2   0.0    0.0011      0.52      89     122 ..     336     370 ..     326     384 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00018
                  HHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  72 lealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  +++l++++   +a + +++++l+  l+  +t ++vG+SG GKS    al+  l+++ +ev
   CTQ27243.1  15 VRNLNVAFRQQDAPEVQAVRQLSFSLRRgETLAIVGESGSGKSVTALALMRLLDAASSEV 74 
                  567777788888888999********998**************87766666666665555 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0011
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                  ++e+++  l   +t  lvG+SG GKSt   all  
   CTQ27243.1 336 AVEKVSFDLWPgETLSLVGESGCGKSTTGRALLRL 370
                  56666666655599*************87777665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.5e-05     0.012      28      68 ..      23      64 ..      12      75 .. 0.87
   2 ?   -1.9   0.0       5.2   2.4e+03     104     147 ..     183     228 ..     167     233 .. 0.64
   3 ?    3.6   0.0       0.1        47      46      80 ..     346     380 ..     328     401 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.5e-05
   IstB_IS21 28 rsldkrkvkeLatlsf.iekkenivllGpsGvGKshlaialg 68
                r+ d+ +v+++++lsf +++ e ++++G sG GKs  a al 
  CTQ27243.1 23 RQQDAPEVQAVRQLSFsLRRGETLAIVGESGSGKSVTALALM 64
                4568899*********77999*****************9985 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5.2
   IstB_IS21 104 krllkvdllilDd..lgllpldqaeaellfeviekryerrsiiits 147
                 +   ++++li D+   +l    qa+  +l  v++k      i it 
  CTQ27243.1 183 ALSCRPAVLIADEptTALDVTIQAQILQLIAVLQKEMAMGVIFITH 228
                 5556888999998322333444555566666677766666666665 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.1
   IstB_IS21  46 kkenivllGpsGvGKshlaialgveavraglsvlf 80 
                   e + l+G sG GKs    al +   ++g  ++f
  CTQ27243.1 346 PGETLSLVGESGCGKSTTGRALLRLVETQGGTITF 380
                 568899**********9988886665556666655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00041      0.19      12      55 ..      22      65 ..      14     162 .. 0.72
   2 ?    5.1   0.0     0.031        15      28      49 ..     343     363 ..     320     377 .. 0.84
   3 ?   -1.2   0.0       2.6   1.2e+03     166     188 ..     497     519 ..     471     520 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00041
      AAA_25 12 vadlaa.pppprrwlvkgllpagelallaGapgtGKttlaldlal 55
                +++ +a + + +r+l   l ++ge+ +++G +g+GK++ al l+ 
  CTQ27243.1 22 FRQQDApEVQAVRQLSFSL-RRGETLAIVGESGSGKSVTALALMR 65
                5555554666666666666.69****************9999874 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.031
      AAA_25  28 gllpagelallaGapgtGKttl 49 
                 +l+p ge+  l+G +g+GK+t 
  CTQ27243.1 343 DLWP-GETLSLVGESGCGKSTT 363
                 5665.99999**********96 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.6
      AAA_25 166 galvealeriarrtgaavllvhH 188
                 +++++ + +++r+ g+a+l++ H
  CTQ27243.1 497 AQIINLMLDLQREMGIAFLFISH 519
                 789999999***********999 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00069      0.33      27      61 ..      37      71 ..      21      87 .. 0.85
   2 ?    5.7   0.1      0.02       9.5      36      59 ..     350     373 ..     345     383 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00069
       AAA_7 27 elllknkkpvllvGptGtGKtviikdllkkldkek 61
                +  l+++  + +vG++G+GK+v++  l++ ld  +
  CTQ27243.1 37 SFSLRRGETLAIVGESGSGKSVTALALMRLLDAAS 71
                55678889999***************999998654 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.02
       AAA_7  36 vllvGptGtGKtviikdllkkldk 59 
                 + lvG++G+GK+++ + ll+ +++
  CTQ27243.1 350 LSLVGESGCGKSTTGRALLRLVET 373
                 569***********9999987764 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0034       1.6      11      52 ..      32      73 ..      27     100 .. 0.83
   2 ?    0.8   0.0      0.58   2.8e+02     173     199 ..     158     184 ..     145     189 .. 0.81
   3 ?    5.1   0.0     0.028        13      24      86 ..     349     412 ..     328     425 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0034
  Mg_chelatase 11 akraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplsee 52
                  a r l  +   g  l +vG +GsGK++ a +l+ ll + s+e
    CTQ27243.1 32 AVRQLSFSLRRGETLAIVGESGSGKSVTALALMRLLDAASSE 73
                  5566666666677899*******************9887765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.58
  Mg_chelatase 173 csekeierYlsklsgplldRidlqvev 199
                    +e+  +rY ++lsg +  R+ + +++
    CTQ27243.1 158 QAEEMLSRYPHQLSGGMRQRVMIAMAL 184
                   5677889*************9998765 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.028
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllpplseeealevakiasvag.kkeeekllkrrpfraphhsas 86 
                    l lvG +G+GK+   ++l  l+     + +++ ++i ++ag k ++ +   +  f++p  s  
    CTQ27243.1 349 TLSLVGESGCGKSTTGRALLRLVETQGGTITFDGQRIDTLAGgKLQALRRNIQFIFQDPYASLD 412
                   6789*****************9999998888999999888884444444445556666666655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.012       5.5       3      35 ..      48      80 ..      46     235 .. 0.79
   2 !    8.0   0.0    0.0078       3.7       3      23 ..     352     372 ..     350     415 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.012
                EESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA  3 lyGppGtGKTllakavakelgvefleisgsell 35
                ++G  G GK+ +a a+++ l++   e++   l+
  CTQ27243.1 48 IVGESGSGKSVTALALMRLLDAASSEVNSEGLW 80
                78*****************98887777777666 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0078
                 EESSTTSSHHHHHHHHHHHHT CS
         AAA   3 lyGppGtGKTllakavakelg 23 
                 l+G  G+GK+++ +a+ + ++
  CTQ27243.1 352 LVGESGCGKSTTGRALLRLVE 372
                 89*************998764 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0      0.01       4.8       2      35 ..      47      80 ..      46      96 .. 0.76
   2 !    8.6   0.0     0.005       2.3       3      25 ..     352     374 ..     350     388 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.01
  RNA_helicase  2 wlyGpsgeGKStlakeLakallkklklkkkdsvy 35
                   ++G+sg GKS++a  L++ l  ++ + +++ ++
    CTQ27243.1 47 AIVGESGSGKSVTALALMRLLDAASSEVNSEGLW 80
                  589*************999888776555555544 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.005
  RNA_helicase   3 lyGpsgeGKStlakeLakallkk 25 
                   l+G+sg+GKSt+ + L + ++++
    CTQ27243.1 352 LVGESGCGKSTTGRALLRLVETQ 374
                   89**********99998877755 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.015       7.3       3      27 ..      47      71 ..      45      98 .. 0.82
   2 !    9.2   0.1    0.0024       1.1       3      25 ..     351     373 ..     349     383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.015
                EEE--SSSSHHHHHHHGGGGBS--E CS
       AAA_5  3 lLvGppGtgKselaerlaaalnrev 27
                 +vG++G+gKs  a  l ++l +  
  CTQ27243.1 47 AIVGESGSGKSVTALALMRLLDAAS 71
                589***************9994433 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0024
                 EEE--SSSSHHHHHHHGGGGBS- CS
       AAA_5   3 lLvGppGtgKselaerlaaalnr 25 
                  LvG++G+gKs+  + l++++++
  CTQ27243.1 351 SLVGESGCGKSTTGRALLRLVET 373
                 59***************999844 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.2    0.0011       0.5      26      47 ..      46      67 ..      43      74 .. 0.88
   2 ?    6.0   0.1     0.024        11      27      58 ..     351     380 ..     339     383 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0011
       DUF87 26 lAilgsTGsGKSntvavLleel 47
                lAi+g++GsGKS t+  L++ l
  CTQ27243.1 46 LAIVGESGSGKSVTALALMRLL 67
                7**************9998765 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.024
       DUF87  27 AilgsTGsGKSntvavLleellekkgatilil 58 
                   +g++G GKS+t + Ll+ l+ + ++ ++ +
  CTQ27243.1 351 SLVGESGCGKSTTGRALLR-LV-ETQGGTITF 380
                 678**************96.55.455555555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.019       9.1      19      49 ..      44      74 ..      17     113 .. 0.73
   2 !    8.3   0.2    0.0037       1.7      22      49 ..     351     378 ..     345     396 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.019
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrv 49
                 + +++G  G+GK+ +  al ++++aa  +v
  CTQ27243.1 44 ETLAIVGESGSGKSVTALALMRLLDAASSEV 74
                47789*********98888888877775333 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0037
      AAA_30  22 vltGpAGtGKttalkalreaweaaggrv 49 
                  l+G  G GK+t+ +al +++e++gg++
  CTQ27243.1 351 SLVGESGCGKSTTGRALLRLVETQGGTI 378
                 589*********************9776 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0051       2.4       2      33 ..      43      74 ..      42     113 .. 0.77
   2 !    7.2   0.1     0.009       4.3       3      41 ..     348     385 ..     346     397 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0051
                -EEEEEESSTTSSHHHHHHHHHHHHHHTT--E CS
  APS_kinase  2 gvvvwltGlsgsGKstianalekkLvekgisv 33
                g ++ + G sgsGKs  a al + L +   +v
  CTQ27243.1 43 GETLAIVGESGSGKSVTALALMRLLDAASSEV 74
                778999****************9998776555 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.009
                 EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH CS
  APS_kinase   3 vvvwltGlsgsGKstianalekkLvekgisvylLdGdnv 41 
                  ++ l G sg GKst  +al + ++++g  +++ dG+ +
  CTQ27243.1 348 ETLSLVGESGCGKSTTGRALLRLVETQG-GTITFDGQRI 385
                 678899**************97666665.5677899877 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0019      0.91      11      47 ..      32      68 ..      23      85 .. 0.78
   2 ?    4.6   0.0     0.051        24      24      48 ..     349     373 ..     326     384 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0019
                     HHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHST CS
  Sigma54_activat 11 lleqikkvaktdlsvlitGesGtGKellaraiheask 47
                     +++q++   +   ++ i+GesG+GK++ a a+ +  +
       CTQ27243.1 32 AVRQLSFSLRRGETLAIVGESGSGKSVTALALMRLLD 68
                     5566666677778899*************99887554 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.051
                      -EEEECSTTSSHHHHHHHHHHHSTT CS
  Sigma54_activat  24 svlitGesGtGKellaraiheaskr 48 
                      ++ ++GesG+GK++  ra+ +  + 
       CTQ27243.1 349 TLSLVGESGCGKSTTGRALLRLVET 373
                      56689**********9999876665 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.047        22      20      73 ..      47     100 ..      35     116 .. 0.76
   2 !    8.7   0.1     0.002      0.96      21      53 ..     352     384 ..     348     389 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.047
  Zeta_toxin  20 llgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPeyeeilkadpkkas 73 
                  ++G +G+GKs +a +l + l+++++ v  ++  lR++ +++ ++ ++ ++++ 
  CTQ27243.1  47 AIVGESGSGKSVTALALMRLLDAASSEVNSEGLWLRRRNRQVIALNEQTDAEMR 100
                 589***********9999999888877777777777777776666666666655 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.002
  Zeta_toxin  21 lgGqpGAGKselaellkdelerqgnvvrldpDd 53 
                 l+G +G+GKs++ ++l + +e+qg+ +++d+ +
  CTQ27243.1 352 LVGESGCGKSTTGRALLRLVETQGGTITFDGQR 384
                 89*************************999865 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.018       8.3       4      22 ..      45      63 ..      42      72 .. 0.85
   2 !    7.6   0.0    0.0059       2.8       6      59 ..     351     403 ..     347     427 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.018
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 ++i+G+sg+GK+ +a+ l
  CTQ27243.1 45 TLAIVGESGSGKSVTALAL 63
                689***********99877 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0059
      AAA_24   6 liyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie..swedfldevvel 59 
                  ++G+sg GK+t+ + l     ++ t +G+   d+ +++++   ++++++  ++++
  CTQ27243.1 351 SLVGESGCGKSTTGRAL---LRLVETQGGTITFDGQRIDTLAggKLQALRRNIQFI 403
                 589**************...889999999999999999988888788877777766 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.014       6.4       3      44 ..      48      86 ..      46     115 .. 0.69
   2 ?    6.9   0.0     0.019       8.8       3      22 ..     352     371 ..     351     415 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.014
      AAA_18  3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe 44
                + G +G+GK+  a +L ++l   +  ++ +  +gl l + + 
  CTQ27243.1 48 IVGESGSGKSVTALALMRLL---DAASSEVNSEGLWLRRRNR 86
                8899**************97...5555555555555555555 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.019
      AAA_18   3 ltGtpGvGKttlakeLskrl 22 
                 l G +G+GK+t +++L ++ 
  CTQ27243.1 352 LVGESGCGKSTTGRALLRLV 371
                 67999***********7763 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00026      0.12      40      71 ..      47      78 ..      45     117 .. 0.82
   2 ?    1.3   0.0      0.29   1.3e+02      42      61 ..     353     372 ..     349     375 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00026
     DUF3987 40 lvvapsGerKSpvdklvlrpleeieaelreey 71
                ++v++sG++KS ++ +++r+l ++ +e ++e 
  CTQ27243.1 47 AIVGESGSGKSVTALALMRLLDAASSEVNSEG 78
                79**********************99999875 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.29
     DUF3987  42 vapsGerKSpvdklvlrple 61 
                 v++sG +KS++ +++lr++e
  CTQ27243.1 353 VGESGCGKSTTGRALLRLVE 372
                 9****************997 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0041       1.9       2      25 ..      45      68 ..      44      87 .. 0.85
   2 ?    5.0   0.2     0.045        21       2      22 ..     349     369 ..     348     377 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0041
                CEEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawa 25
                ++++ Ge+GsGK++ +  l++++ 
  CTQ27243.1 45 TLAIVGESGSGKSVTALALMRLLD 68
                789**********99999998775 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.045
                 CEEEEC-TTTCHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklal 22 
                 ++ l Ge+G+GK+t  + l +
  CTQ27243.1 349 TLSLVGESGCGKSTTGRALLR 369
                 67899********97666655 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0     0.002      0.92      32      60 ..      37      64 ..      18      72 .. 0.78
   2 ?    3.2   0.0       0.1        48      29      60 ..     338     368 ..     323     370 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.002
                  EEEGGGS-.SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE 32 vldlkkmashllvaGatgsGKStalntLi 60
                   + l+  +  l ++G +gsGKS++  +L+
    CTQ27243.1 37 SFSLRRGE-TLAIVGESGSGKSVTALALM 64
                  45555555.799***********988887 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.1
                   -EEEEEGGGS-.SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  29 nplvldlkkmashllvaGatgsGKStalntLi 60 
                   +++ +dl + +  l ++G +g GKSt+ ++L+
    CTQ27243.1 338 EKVSFDLWPGE-TLSLVGESGCGKSTTGRALL 368
                   56677777777.7889***********99986 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.023        11       3      32 ..      47      75 ..      45     109 .. 0.68
   2 ?    6.8   0.1     0.011         5       3      24 ..     351     372 ..     349     399 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.023
         PRK  3 gvagsSGaGkttvarklekifgrekvkaae 32
                ++ g+SG+Gk+ +a +l  ++  ++ + ++
  CTQ27243.1 47 AIVGESGSGKSVTALALMRLLDAASSE-VN 75
                899************999999844333.33 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.011
         PRK   3 gvagsSGaGkttvarklekifg 24 
                 ++ g+SG+Gk+t+ r+l  +++
  CTQ27243.1 351 SLVGESGCGKSTTGRALLRLVE 372
                 789**********999877665 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.08        38       2      20 ..      45      63 ..      44      80 .. 0.85
   2 ?    8.6   0.3    0.0023       1.1       2      22 ..     349     369 ..     348     377 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.08
                EEEEESSTTSSHHHHHHHH CS
        AIG1  2 tivlvGktgnGkSaTgNsi 20
                t+ +vG +g+GkS T+ ++
  CTQ27243.1 45 TLAIVGESGSGKSVTALAL 63
                6889**********98665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0023
                 EEEEESSTTSSHHHHHHHHHT CS
        AIG1   2 tivlvGktgnGkSaTgNsilg 22 
                 t+ lvG +g+GkS+Tg ++l+
  CTQ27243.1 349 TLSLVGESGCGKSTTGRALLR 369
                 6779************99986 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0048       2.2       8      37 ..      37      66 ..      31     202 .. 0.86
   2 ?    3.9   0.0     0.074        35      12      41 ..     345     374 ..     339     595 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0048
                 HS-EBTT-EEEEEESTTSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  8 lfpivqGqrtlipgafgvGktvisqslskq 37
                  f++ +G++++i+g++g Gk+v + +l++ 
   CTQ27243.1 37 SFSLRRGETLAIVGESGSGKSVTALALMRL 66
                 58899*****************99777665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.074
                  BTT-EEEEEESTTSSHHHHHHHHHHHSSTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  12 vqGqrtlipgafgvGktvisqslskqsnsd 41 
                    G+++ ++g++g+Gk++  ++l++  +++
   CTQ27243.1 345 WPGETLSLVGESGCGKSTTGRALLRLVETQ 374
                  5699*************9998888776555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.029        14       4      25 ..      48      71 ..      46     117 .. 0.72
   2 ?    5.7   0.3     0.032        15       4      21 ..     352     369 ..     350     456 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.029
      AAA_33  4 lvGlpGsGKstlaerllkklg..a 25
                +vG +GsGKs  a  l++ l+   
  CTQ27243.1 48 IVGESGSGKSVTALALMRLLDaaS 71
                79***********99998887433 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.032
      AAA_33   4 lvGlpGsGKstlaerllk 21 
                 lvG +G+GKst  + ll+
  CTQ27243.1 352 LVGESGCGKSTTGRALLR 369
                 79**********999975 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1     0.001      0.49       6      26 ..      50      70 ..      46      76 .. 0.84
   2 ?   -2.1   0.0       7.8   3.7e+03      58      69 ..     207     218 ..      80     235 .. 0.53
   3 ?    2.8   0.3      0.25   1.2e+02       6      27 ..     354     375 ..     352     530 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.001
                SSTTSSHHHHHHHHHHHHHHT CS
                xxxxxxxxxxxxxxxxxxxxx RF
        CbiA  6 tkGGvGKTtlaanLaralarr 26
                + +G+GK+++a++L+r+l  +
  CTQ27243.1 50 GESGSGKSVTALALMRLLDAA 70
                78***************9876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 7.8
                 CCCHHHHHHCHC CS
                 xxxxxxxxxxxx RF
        CbiA  58 rllellealgkk 69 
                 ++l+l+++l+k+
  CTQ27243.1 207 QILQLIAVLQKE 218
                 455566666655 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.25
                 SSTTSSHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLaralarrg 27 
                 + +G GK+t+  +L+r+   +g
  CTQ27243.1 354 GESGCGKSTTGRALLRLVETQG 375
                 679*******999999877655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.036        17       5      50 ..      31      76 ..      26      83 .. 0.81
   2 ?    5.3   0.0      0.04        19      18      45 ..     344     373 ..     328     380 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.036
                HHHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT--..---- CS
        TsaE  5 eetealgkklakalgdvilLeGdLGaGKTtlvrglakalgve..evkS 50
                +++++l  +l +  g+++++ G+ G+GK++ + +l++ l+ +  ev+S
  CTQ27243.1 31 QAVRQLSFSLRR--GETLAIVGESGSGKSVTALALMRLLDAAssEVNS 76
                455555566655..899********************99886678888 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.04
                 H..TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  18 l..gdvilLeGdLGaGKTtlvrglakalgv 45 
                 l  g+++ L G+ G+GK+t  r+l++ ++ 
  CTQ27243.1 344 LwpGETLSLVGESGCGKSTTGRALLRLVET 373
                 1347789****************9998765 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.017       8.2      17      40 ..      45      68 ..      32      74 .. 0.83
   2 ?    4.5   0.2      0.03        14      19      45 ..     351     377 ..     346     385 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.017
  TrwB_AAD_bind 17 hilivGttGsGKtqalekllrair 40
                    ++ivG  GsGK++++ +l+r + 
     CTQ27243.1 45 TLAIVGESGSGKSVTALALMRLLD 68
                   4689****************9765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.03
  TrwB_AAD_bind  19 livGttGsGKtqalekllrairargdr 45 
                     +vG  G GK+++ ++llr ++ +g +
     CTQ27243.1 351 SLVGESGCGKSTTGRALLRLVETQGGT 377
                    589******************999864 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0013      0.62       9      54 ..      30      73 ..      20     113 .. 0.82
   2 ?   -2.6   0.0       9.8   4.6e+03      43      73 ..     501     530 ..     497     541 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0013
                HHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.... CS
      ResIII  9 eeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgke 54
                 +a+++l  +l  +r + + i+ + G+GK+++a++l++ l  + +e
  CTQ27243.1 30 VQAVRQLSFSL--RRGETLAIVGESGSGKSVTALALMRLLDAASSE 73
                57777777676..5888999******************99877655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.8
                 HHHHHH-S.....-EEEEESSHHHHHHHHHH CS
      ResIII  43 klierllkkgkeekflflvprkslleqtlee 73 
                 +l+  l+++ ++  flf+ +  +++e+  ++
  CTQ27243.1 501 NLMLDLQREMGI-AFLFISHDMAVVERISHR 530
                 455555555554.9*******9999998766 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.14        64       2      21 ..      46      65 ..      45     110 .. 0.81
   2 ?    5.7   0.1     0.033        15       3      21 ..     351     369 ..     349     393 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.14
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                 aivG + +GKS    al++
  CTQ27243.1 46 LAIVGESGSGKSVTALALMR 65
                69**********98888876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.033
                 EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   3 aivGrpNvGKStLinaltg 21 
                  +vG +  GKSt  +al++
  CTQ27243.1 351 SLVGESGCGKSTTGRALLR 369
                 69*************9987 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0063         3      15      36 ..      45      66 ..      37      70 .. 0.86
   2 ?    0.6   0.1      0.69   3.3e+02      16      35 ..     350     369 ..     348     374 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0063
     Pox_A32 15 rlalvGgsGsGktvyLlsLlrt 36
                 la+vG+sGsGk v  l+L+r 
  CTQ27243.1 45 TLAIVGESGSGKSVTALALMRL 66
                589***********99999876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.69
     Pox_A32  16 lalvGgsGsGktvyLlsLlr 35 
                 l lvG+sG Gk +  ++Llr
  CTQ27243.1 350 LSLVGESGCGKSTTGRALLR 369
                 789********998777776 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.077        36      25      50 ..      45      70 ..      34     106 .. 0.80
   2 ?    4.6   0.0     0.046        22      25      50 ..     349     374 ..     336     404 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.077
      AAA_15 25 ltvliGkNnsGKSsilealdlFlnnk 50
                +  ++G+ +sGKS  + al  +l+  
  CTQ27243.1 45 TLAIVGESGSGKSVTALALMRLLDAA 70
                678**********9999999998866 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.046
      AAA_15  25 ltvliGkNnsGKSsilealdlFlnnk 50 
                 +  l+G+ ++GKS+  +al  + +++
  CTQ27243.1 349 TLSLVGESGCGKSTTGRALLRLVETQ 374
                 5679***********99998887765 PP

>> Hpr_kinase_C  HPr Serine kinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.016       7.5      22      39 ..      47      64 ..      42      78 .. 0.90
   2 ?    2.9   0.0      0.14        67      23      39 ..     352     368 ..     342     393 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.016
                  EEEESTCHHHHHHHHHHH CS
  Hpr_kinase_C 22 LitGesgvGKselaleLi 39
                   i+Gesg GKs +al L+
    CTQ27243.1 47 AIVGESGSGKSVTALALM 64
                  699************997 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.14
                   EEESTCHHHHHHHHHHH CS
  Hpr_kinase_C  23 itGesgvGKselaleLi 39 
                   ++Gesg GKs ++  L+
    CTQ27243.1 352 LVGESGCGKSTTGRALL 368
                   89********9987665 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.011       5.3      16      37 ..      40      61 ..      35      66 .. 0.89
   2 ?   -2.4   0.2       5.2   2.5e+03     140     163 ..     204     228 ..     197     234 .. 0.84
   3 ?    2.8   0.1      0.14        64      19      37 ..     347     365 ..     343     382 .. 0.87
   4 ?   -1.2   0.1       2.2     1e+03     129     165 ..     489     521 ..     475     540 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.011
      ATPase 16 ipegrvvlitGepGtGKtifal 37
                + +g++  i+Ge+G+GK++ al
  CTQ27243.1 40 LRRGETLAIVGESGSGKSVTAL 61
                67899*************9886 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.2
      ATPase 140 aReilrqlvrvl.kklgvTailvse 163
                 + +++ ql+ vl k++ +  i+++ 
  CTQ27243.1 204 IQAQILQLIAVLqKEMAMGVIFITH 228
                 6789999*****9999999999975 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.14
      ATPase  19 grvvlitGepGtGKtifal 37 
                 g++  ++Ge+G+GK++ + 
  CTQ27243.1 347 GETLSLVGESGCGKSTTGR 365
                 677889*********9886 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 2.2
      ATPase 129 tglayeekeavaReilrqlvrvl.kklgvTailvseks 165
                 ++l     +  +R+++ +l+  l +++g+  +++s   
  CTQ27243.1 489 SAL-----DVSIRAQIINLMLDLqREMGIAFLFISHDM 521
                 444.....667999999999999999*******99843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              38  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 4279.04
//
Query:       CTQ27244.1  [L=513]
Description: putative peptide transporter subunit: periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-99  332.4  10.8    4.2e-99  332.0  10.8    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f
     0.0033   17.3   0.0     0.0086   15.9   0.0    1.6  2  Ssl1       Ssl1-like


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.0  10.8  4.7e-103   4.2e-99       2     375 ..      71     429 ..      70     431 .. 0.96

  Alignments for each domain:
  == domain 1  score: 332.0 bits;  conditional E-value: 4.7e-103
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTTTTTHCHHHHHHH CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnalfltllaavpasi 100
                 ++  LAes ++vs+Dg++yt+kL  gvkF+DGt+++Ae+v+++++r+ +p+++ ++++l++   +i++ eavd++tv++tlk+p++ f+++la+++ ++
  CTQ27244.1  71 LQNVLAES-YTVSPDGLVYTIKLHSGVKFQDGTDFNAEAVKANLDRASNPENHLKRYNLYK---NIASTEAVDPTTVKITLKQPFSAFINILAHPATAM 165
                 7889****.8*************************************************95...*********************************** PP

                 GCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCTHCHHHHHTTEEEEE CS
   SBP_bac_5 101 akkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaepppsdieqlkeakglkvly 199
                    + +  ++++kd   +pvgtGPYkl+ +++ + +++ +++ Yw++g+pkld+i+++ + d+++raa+lq+Ge++++  +p ++++ l ++++l++ +
  CTQ27244.1 166 I--SPAALKKYGKDIGFHPVGTGPYKLDTWNQTDFVKVSKFDGYWQPGLPKLDSITWRPVVDNNTRAAMLQTGEAQFAFPIPYEQAPLLAKNSKLEL-V 261
                 *..577788889*********************************99**************************************************.* PP

                 EEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHHHTT-BCSSTSCEETCEEE CS
   SBP_bac_5 200 espgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLkeaGykdgdggglrekklk 298
                  sp+    y+++N +++pfd+++vR+A++yAi+r+++vk+++ gyatpa++++pps+++a+ ++     +ydp+kA++lLkeaGy++g+          
  CTQ27244.1 262 ASPSIMQRYISMNVTQKPFDNPKVREAINYAINRQALVKVAFAGYATPATGVVPPSIAYAQTYTAW---PYDPAKARQLLKEAGYPNGFS--------- 348
                 ************************************************************999998...69*****************96......... PP

                 EEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHH....HHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTTCT CS
   SBP_bac_5 299 ltlllasgspaekaiaeliqqqlkkiGikvevktvdwa....atylervkdgdfdmillgwgadypdpdnflnpflsssga 375
                 +tl  + + +++++++++ qqql+++Gik++v ++d+     ++  + +k+  + m+ +gw+a+++++d+ l+p+++s+++
  CTQ27244.1 349 TTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGqraaEVEGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNW 429
                 99*********************************886688766666699**************************99886 PP

>> Ssl1  Ssl1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.6e-07    0.0086      86     151 ..      13      78 ..       8     101 .. 0.83
   2 ?   -4.1   0.0       1.3   1.2e+04      33      45 ..     366     378 ..     363     398 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.6e-07
                 HHHHHHHHSSS-TTSEEEEEEEE-S.S----SS-HHHHHHHHHHTT-EEEEEEESS--HHHHHHHHH CS
        Ssl1  86 LelalasLkkvpshasrevliifss.lstcDPgdiyetidelkkekirvsvigLsaevavckelake 151
                 L++a a L + p++a+++v++ ++s ++t DP d ++t+ + + ++    + gL  e+++ + la+ 
  CTQ27244.1  13 LSIA-AALASAPAFAAKDVVVAVGSnFTTLDPYDANDTLSQAVAKSFYQGLFGLDKEMKLQNVLAES 78 
                 4544.569999********99887648999*****************************99999875 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.3
                 HHHSTT-EEEEEE CS
        Ssl1  33 fdqnPisqlglia 45 
                 f q  ++q+g+ a
  CTQ27244.1 366 FTQQQLAQVGIKA 378
                 6777888888743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3775.26
//
Query:       CTQ27245.1  [L=306]
Description: putative peptide transporter permease subunit: membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-42  143.2   9.5    7.3e-42  143.2   9.5    2.4  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        1.3    7.2   6.4        1.6    7.0   6.4    1.4  1  DUF2070       Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   2.5     0.099   8.9e+02      30      44 ..      13      62 ..       4     112 .. 0.58
   2 !  143.2   9.5   8.2e-46   7.3e-42       1     184 [.     113     304 ..     109     305 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.099
  BPD_transp_1 30 lPsfvlaillvlvf...................................v 44
                  +P+++++ +lv++f                                    
    CTQ27245.1 13 IPTLLIVAVLVFLFvhmlpgdparliagpeadaqvvamvrqqlgldqplH 62
                  78888777777777666666666666666666555555555555555440 PP

  == domain 2  score: 143.2 bits;  conditional E-value: 8.2e-46
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.........vilsilghlilpviillllsaapyvrlirraalrslpkdlveaar 88 
                   g+ +Gi aa+ rn++ d+l + l   + s+P f+l++ll  vf         v  +++ h+ilp ++l++  aa ++r++r++++++l +d++++ar
    CTQ27245.1 113 GMAAGIAAAVWRNRWPDRLGMALAVSGISFPAFALGMLLMQVFsvelgwlptVGADSWRHYILPSLTLGAAVAAVMARFTRASFVDVLHEDYMRTAR 209
                   677899999**************************************************************************************** PP

  BPD_transp_1  89 alGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprvr 184
                   a+G+s+ +++ k+ l+na++p++t ++l+fg+llgg++++e +++wpGlg+ll+++ +++dy+ i+ + vl + + ++l+nlv+d+l+++++p +r
    CTQ27245.1 210 AKGVSETRVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQ-AEVLLFSLEFILINLVVDVLYAAINPAIR 304
                   ******************************************************************.**************************998 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.4   0.00018       1.6      71     155 ..      98     197 ..       7     299 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00018
     DUF2070  71 slflalltelivviisllaillsall....qalvllalvls............lalvfalrllvlvavsdesllkavlpaliqpllailllvlyfspes 153
                  l+l l+++  +v++ ++a +++a+     ++ + +al++s            l+ vf++ l  l +v+ +s+++++lp+l+  +++++++  + + +s
  CTQ27245.1  98 TLWLTLASMSWAVLFGMAAGIAAAVWrnrwPDRLGMALAVSgisfpafalgmlLMQVFSVELGWLPTVGADSWRHYILPSLTLGAAVAAVMARF-TRAS 195
                 48999999******999999999988999999999999999**********99999***********************997777776666655.4444 PP

     DUF2070 154 fl 155
                 f+
  CTQ27245.1 196 FV 197
                 43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2385.24
//
Query:       CTQ27246.1  [L=303]
Description: putative peptide transporter permease subunit: membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-30  105.4  11.6    2.9e-30  105.4  11.6    2.0  2  BPD_transp_1     Binding-protein-dependent transport system i
    8.3e-16   57.7   0.2    8.3e-16   57.7   0.2    3.4  4  OppC_N           N-terminal TM domain of oligopeptide transpo
  ------ inclusion threshold ------
      0.036   13.8   6.8      0.082   12.7   6.8    1.6  1  Gly-zipper_YMGG  YMGG-like Gly-zipper
       0.38   10.8   8.2        1.1    9.3   8.2    1.8  1  Gly-zipper_Omp   Glycine zipper
       0.52    9.7   3.4       0.96    8.8   3.4    1.5  1  DUF3482          Domain of unknown function (DUF3482)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.8      0.52   1.9e+03     160     175 ..      41      56 ..      29      63 .. 0.49
   2 !  105.4  11.6   8.1e-34   2.9e-30       1     184 [.     119     302 ..     119     303 .] 0.99

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.52
  BPD_transp_1 160 alviavlllnlvadil 175
                   +++ +++ll++++ i+
    CTQ27246.1  41 MGAGIFVLLLIAVAIV 56 
                   3333333333333333 PP

  == domain 2  score: 105.4 bits;  conditional E-value: 8.1e-34
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g++lG+la+ ++ +++d+l+++l +vl+++P ++lai +v       + g+++   +i+++++s+++++rl+r + l   ++ ++e ar  Gas+ +
    CTQ27246.1 119 GTVLGLLAG-YYEGWWDRLIMRLCDVLFAFPGILLAIAVV------AVMGSGMANvIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDAT 208
                   789******.******************************......99*******99**************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqrlldprv 183
                   i+++++lP ++++i+  + +++g ++  a+ l+flg    lg +  ++++g +++e+            ++++a+ + vl++nl+ d l ++ldp++
    CTQ27246.1 209 ILFNHILPGTVSSIVVYFTMRIGVSIISAASLSFLG----LGAQPPTPEWGAMLNEARadmvmsphvaLFPAVAIFVTVLAFNLLGDGLRDALDPKL 301
                   ************************************....********************************************************9 PP

  BPD_transp_1 184 r 184
                   +
    CTQ27246.1 302 K 302
                   7 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.2   2.3e-19   8.3e-16       1      48 [.      25      75 ..      25      78 .. 0.84
   2 ?   -1.7   0.4      0.85     3e+03      22      31 ..     109     118 ..     101     131 .. 0.65
   3 ?   -3.7   4.9       3.5   1.3e+04      15      33 ..     157     175 ..     149     188 .. 0.68
   4 ?   -3.2   0.4       2.5   8.8e+03      21      29 ..     278     286 ..     273     293 .. 0.58

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 2.3e-19
      OppC_N  1 slwqdawrrFkrNklAvvglvilllllliaifaPliaPydp.qdliqn..l 48
                ++w+++wrrF+r ++A+ + +++lll+++ai+aP+iaPyd  ++++++  +
  CTQ27246.1 25 TPWHEFWRRFRRQPVAMGAGIFVLLLIAVAIVAPWIAPYDAeNYFDYDrlN 75
                89*************************************986333233345 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.85
      OppC_N  22 illlllliai 31 
                 +l++l+ +ai
  CTQ27246.1 109 VLAVLIGAAI 118
                 5666666554 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3.5
      OppC_N  15 lAvvglvilllllliaifa 33 
                 +Av g  +  +++++aif 
  CTQ27246.1 157 VAVMGSGMANVIIAVAIFS 175
                 4566666666677777774 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 2.5
      OppC_N  21 villlllli 29 
                 +i++++l++
  CTQ27246.1 278 AIFVTVLAF 286
                 445554444 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   6.8   2.3e-05     0.082      16      46 .]      98     129 ..      97     129 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
                      XXXXXXX.XXXXXXXXXXXXXXXXXXXXXX-H CS
  Gly-zipper_YMGG  16 vvGaliG.sgggkGAaiGAaaGalaGgaiGaq 46 
                      +vGa+i  ++g    +iGAa+G + G ++G++
       CTQ27246.1  98 LVGAQISlAAGVLAVLIGAAIGTVLGLLAGYY 129
                      799999988888889***************97 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   8.2    0.0003       1.1       8      41 ..      98     129 ..      97     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0003
  Gly-zipper_Omp   8 aaGaliGgavggrgtGaliGAavGaavGgliGaa 41 
                     ++Ga i  a+g  +   liGAa+G ++G l G++
      CTQ27246.1  98 LVGAQISLAAG--VLAVLIGAAIGTVLGLLAGYY 129
                     57888888888..7999***********999998 PP

>> DUF3482  Domain of unknown function (DUF3482)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.4   0.00027      0.96     159     200 ..      98     139 ..      79     167 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00027
     DUF3482 159 aaGagiDlavgGltLGaaaaiGalaGglaatlkrygkrllak 200
                 ++Ga i la+g l   ++aaiG ++G la++++  ++rl  +
  CTQ27246.1  98 LVGAQISLAAGVLAVLIGAAIGTVLGLLAGYYEGWWDRLIMR 139
                 69********************************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2373.02
//
Query:       CTQ27247.1  [L=441]
Description: putative AdoMet-dependent methyltransferase, UPF0004 family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-34  117.7   0.0      8e-31  107.7   0.0    2.4  2  Radical_SAM     Radical SAM superfamily
    1.4e-21   76.3   0.0    2.6e-21   75.5   0.0    1.5  1  UPF0004         Uncharacterized protein family UPF0004
    1.5e-21   76.3   1.7    2.8e-21   75.4   1.7    1.5  1  TRAM_2          TRAM domain
     0.0001   22.2   0.4    0.00022   21.2   0.4    1.6  1  TRAM            TRAM domain
     0.0074   16.4   0.2        3.2    8.0   0.1    2.6  2  UPF0180         Uncharacterised protein family (UPF0180)
  ------ inclusion threshold ------
      0.032   14.0   0.0       0.06   13.1   0.0    1.5  1  CLP1_P          mRNA cleavage and polyadenylation factor CLP1
      0.032   13.5   0.0       0.13   11.5   0.0    1.9  2  Methyltransf_2  O-methyltransferase domain
      0.095   12.7   0.5       0.19   11.7   0.5    1.5  1  RNase_II_C_S1   RNase II-type exonuclease C-terminal S1 domai
        1.5    9.2   3.6         16    5.9   2.6    2.3  2  S1              S1 RNA binding domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0023       4.6      76     135 ..      44     114 ..       8     121 .. 0.78
   2 !  107.7   0.0     4e-34     8e-31       3     167 .]     146     323 ..     144     323 .. 0.97

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0023
                  CTEEEEEEECSSCHG......HHHHHHHHHTT-SEEEEEEBSSSHH.......HHHHHHTCTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  76 pgiritvetngtlpd......eeklerllelgvdrvslgleaadde.......kvlklmnrghtfeevleale 135
                  +   + v t+g+ ++      e + e+l+e g  ++  g   a ++       kvl+++ ++h++e+vle + 
   CTQ27247.1  44 NADMVIVNTCGFIDSavqeslEAIGEALKENG-KVIVTGCLGAKEDqirevhpKVLEIT-GPHSYEQVLEHVH 114
                  55678899999998899777555555666655.99999999999999************.88*******9775 PP

  == domain 2  score: 107.7 bits;  conditional E-value: 4e-34
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS.................TTHHHHHHHHHHTCCCTEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggeplly.................pdfvellerlaklavpgiritve 83 
                  +++gCn+rC+fC++p+   ++g+  s+++ e+l+e+k+l a+ gvke+++ +++ ++y                   +v l e+lakl   ++r++++
   CTQ27247.1 146 ISEGCNHRCTFCIIPS---MRGDLVSRPIGEVLAEAKRL-ADAGVKELLVISQDTSAYgvdvkhrtgfhngmpvkTSMVSLCEELAKLG-IWVRLHYV 238
                  789************8...8*******************.8**********************************99**********95.9******* PP

                  ECSSCHGHHHHHHHHHTT.-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET...EEEEEEEBTTTSHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  84 tngtlpdeeklerllelg.vdrvslgleaaddekvlklmnrghtfeevlealeklreagikr...vvdrivglpGendeeleellell 167
                   +++++ ++++ +++e   + ++ ++l++a+++ +lklm+r+++ +++l+ ++ +re  +++    +++ivg+pGe++e+++ ll++l
   CTQ27247.1 239 YPYPHV-DDVIPLMAEGKiLPYLDIPLQHASPR-ILKLMKRPGSADRQLARIKQWREI-CPDltlRSTFIVGFPGETEEDFQMLLDFL 323
                  *****9.*********77***************.************************.**************************996 PP

>> UPF0004  Uncharacterized protein family UPF0004
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   1.3e-24   2.6e-21       1      91 [.       9      95 ..       9     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 1.3e-24
                XEEEE--S-CCCCHHHHHHHHHTTTSSS----SSS--SEEEEEE--SSSSHHHHTHHHHHHHHTTST.--EEEEEEHHHHS-HHHHHHH-T CS
     UPF0004  1 kvaietlGCqmNevdseelaslLkkegyelvedeeeAdvvlvnTCavrekaekkviqalrelkalkkpekkvvvlGCmaqrekeellkeep 91
                k+ +++lGC +N vdse++++ L++egy++v + ++Ad+v+vnTC+++++a +++++a++e+ +++    kv+v+GC+  +e +++ + +p
  CTQ27247.1  9 KIGFVSLGCPKNLVDSERILTELRTEGYDVVPTYDNADMVIVNTCGFIDSAVQESLEAIGEALKEN---GKVIVTGCLGAKE-DQIREVHP 95
                67799********************************************************99988...69******98765.55665555 PP

>> TRAM_2  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   1.7   1.4e-24   2.8e-21       1      64 []     379     441 .]     379     441 .] 0.95

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 1.4e-24
                 BTSEEEEEEEEEETTEEEEEETTS-TTTS--EEEES---T...T-EEEEEEEEEETTEEEEEE- CS
      TRAM_2   1 iGktvevlvdgeeeglyvGRsyadAPEvDgevyvtgaeklskvGdfvkvkItdadeyDLiGevv 64 
                 +G+++ vlvd+++e++++GRs+adAPE+Dg vy++g++ + k+Gd+v+vk+++adeyDL+G+ v
  CTQ27247.1 379 VGREILVLVDEVDEEGAIGRSMADAPEIDGAVYLNGETRV-KPGDVVRVKVEHADEYDLWGTRV 441
                 8**********************************98885.58******************977 PP

>> TRAM  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.4   1.1e-07   0.00022       2      59 ..     377     438 ..     376     441 .] 0.89

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.1e-07
                 XXXXXEEEEEEEEE-.TTSEEEEEET......TEEEEETT-...-T..TEEEEEEEEEE-SSEEEE CS
        TRAM   2 syvGstqeVlveglsksegegiGrtdn.....gkvvfvpgd...lpgIGdfVeVkItkvkrqyLrG 59 
                  +vG++++Vlv +++  e   iGr  +     + +v+++g    +p  Gd+V Vk++ + ++ L G
  CTQ27247.1 377 EKVGREILVLVDEVD--EEGAIGRSMAdapeiDGAVYLNGEtrvKP--GDVVRVKVEHADEYDLWG 438
                 68************8..66678888888888***************..**********99998876 PP

>> UPF0180  Uncharacterised protein family (UPF0180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0092        18      12      40 ..      27      50 ..      23      54 .. 0.77
   2 !    8.0   0.1    0.0016       3.2       4      23 ..      59      78 ..      58      90 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0092
     UPF0180 12 vkeaLrekGYeVvdleteedaqsvdaiVv 40
                +  +Lr++GY+Vv+  +     ++d ++v
  CTQ27247.1 27 ILTELRTEGYDVVPTYD-----NADMVIV 50
                6689*********9875.....5555555 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0016
     UPF0180  4 aVeegLsnvkeaLrekGYeV 23
                aV+e+L+ + eaL+e+G  +
  CTQ27247.1 59 AVQESLEAIGEALKENGKVI 78
                8****************655 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     3e-05      0.06     102     137 ..      44      80 ..      20     119 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3e-05
      CLP1_P 102 kasgliIntpGwvkglgaellleliealep.dvvvvl 137
                 +a+ +i+nt+G+++++  e l+++ eal+    v+v+
  CTQ27247.1  44 NADMVIVNTCGFIDSAVQESLEAIGEALKEnGKVIVT 80 
                 6899**********************99873344444 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.6e-05      0.13     127     173 ..      44      88 ..      29     101 .. 0.75
   2 ?   -1.0   0.0      0.45     9e+02       8      59 ..     323     380 ..     316     406 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.6e-05
                     --SEEEEESSGGGS-HHHHHHHHHHHHHH--TT-EEEEEE----TTS CS
  Methyltransf_2 127 eaDaillkrvlhDwsdekcvklLkrvkkalpagGkvivveavlgadp 173
                     +aD+++++     + d ++++ L+ + +al+++Gkviv  ++ +++ 
      CTQ27247.1  44 NADMVIVNTC--GFIDSAVQESLEAIGEALKENGKVIVTGCLGAKED 88 
                     4555555543..57899***********************9966554 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.45
                     HHHTS--......HHHHHS--HHHHHTSSHHH..HHHHHHHHHTTHHHHHHHHHHSS- CS
  Methyltransf_2   8 vregrnq....iifkkafGislfeaikrdeee..rakfnkglqessslvakkvleafd 59 
                     ++e r +      ++ + G+++ e+  + +ee  ++++n+ +q ++++ a+++ e++ 
      CTQ27247.1 323 LKEARLDrvgcFKYSPVEGATANELADQVPEEvkEERWNRFMQLQQQISAERLQEKVG 380
                     5555544444456888888888877776555422567999999999999888777665 PP

>> RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.5   9.6e-05      0.19      20      48 ..     402     432 ..     383     434 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.6e-05
  RNase_II_C_S1  20 adPaVeArv..eggaglplGervrVrLveAD 48 
                    + P +++ v   g++++++G+ vrV++++AD
     CTQ27247.1 402 DAPEIDGAVylNGETRVKPGDVVRVKVEHAD 432
                    67999999999999****************9 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.082   1.6e+02      51      68 ..     378     395 ..     369     400 .. 0.88
   2 ?    5.9   2.6    0.0083        16      31      64 ..     384     432 ..     380     434 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.082
                 ETTEEEEEEEEEEETTTT CS
          S1  51 kvGdevkvkvlkvdkdrr 68 
                 kvG e+ v v++vd++ +
  CTQ27247.1 378 KVGREILVLVDEVDEEGA 395
                 89************9865 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0083
                 EEEGGGSSSS...............CEESCHHHCEETTEEEEEEEEEEE CS
          S1  31 fvpaselsrd...............arvedpdevlkvGdevkvkvlkvd 64 
                 +v + e++ +               a + ++++++k+Gd v+vkv+  d
  CTQ27247.1 384 LVLVDEVDEEgaigrsmadapeidgAVYLNGETRVKPGDVVRVKVEHAD 432
                 55555555556666666666666665677899*************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.35
# Mc/sec: 3724.45
//
Query:       CTQ27248.1  [L=413]
Description: putative proton/sugar symporter, LacY [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.9e-125  418.3  26.4   3.5e-125  418.0  26.4    1.0  1  LacY_symp   LacY proton/sugar symporter
      5e-23   81.6  28.9    2.3e-22   79.4  28.9    1.8  1  MFS_1_like  MFS_1 like family
    9.2e-22   77.4  40.2      8e-15   54.6  33.2    2.0  2  MFS_1       Major Facilitator Superfamily
    0.00022   19.9  34.3     0.0028   16.3  24.7    3.1  2  MFS_2       MFS/sugar transport protein
  ------ inclusion threshold ------
       0.24   11.4   2.9        2.9    7.9   0.4    2.6  2  TraQ        Type-F conjugative transfer system pilin chaperon


Domain annotation for each model (and alignments):
>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  418.0  26.4  9.7e-129  3.5e-125       6     405 ..       5     397 ..       1     403 [. 0.97

  Alignments for each domain:
  == domain 1  score: 418.0 bits;  conditional E-value: 9.7e-129
   LacY_symp   6 ntnfylfalffffyffimsayfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllvlfapfliyvfepllqlnil 104
                 ++n+ l++lf f+y f +s  +++f +w +++lg+s t+tG+++sv+ ++++l+qp+fG isdk+Glkk+l+w +  ll+ ++pf+iyv++pll  n++
  CTQ27248.1   5 KRNYLLLSLFDFLYLFAWSSTMAFFVIWTTQHLGISATKTGLLYSVNAFIALLMQPFFGFISDKFGLKKRLIWLLVALLLPVGPFFIYVYAPLLVHNFW 103
                 459************************************************************************************************ PP

   LacY_symp 105 vGalvGgvflGlvysagagaieayiekvsraskfeyGkarvfGclGyalcaslaGilfsidpslvfwlasgfalilllllllskpdksssakvadalGa 203
                  Gal+Gg++lG+++++g+g+i++yi+k+sr+ +feyG++r++G+lG+a +a + G     +p+l+fwlas++ +i ++  +l+k       +  da  a
  CTQ27248.1 104 FGALLGGIYLGIIFNSGCGVIDSYIDKISRRYQFEYGRVRMWGSLGWAAAAWIVGKYIDSNPNLAFWLASLAIVIAAICFMLTK------IELTDADVA 196
                 ***********************************************************************9999999999999......77899999* PP

   LacY_symp 204 nkeafslrlalelfkdrklwvfvlyvvGvasvydvfdqqfavffkslfespeaGtrvfGyvttagellnalimfiaplivnriGaknalliagvimsvr 302
                 ++e++ +  alel k+ ++w++ l+++ v+ +yd +dqqfa +f+  f +pe+G r +G ++++++  ++l + ++p++vnr Gak al+iag+imsvr
  CTQ27248.1 197 RSESLKVSHALELAKNGQFWMLLLFTLFVTQIYDTYDQQFAQYFSLQFPTPEEGNRWYGILASIQVCGETLFLCLMPWFVNRTGAKWALIIAGLIMSVR 295
                 *************************************************************************************************** PP

   LacY_symp 303 ilgsafattalevvilkllhalevplllvgvfkyitsafdkrlsatifligfqlskqlaivllstlaGklydkvGfqtaylvlgiivlsltlisvftls 401
                 i+gsa+   ++ +  +k++hale pl+lv+vfk+i+++fd++ls+t++l+ + ++ ++a+ + s laG lyd++Gf ++yl+lg +  ++tlis+ftl+
  CTQ27248.1 296 IVGSAVPLGPVWIGAVKMMHALEKPLILVSVFKFIAANFDHKLSSTVYLLVL-FVASIATAIYSPLAGYLYDTIGFANTYLILGSVAGLFTLISIFTLQ 393
                 *************************************************987.5567999999************************************ PP

   LacY_symp 402 kske 405
                 +++e
  CTQ27248.1 394 DKRE 397
                 9986 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4  28.9   6.3e-26   2.3e-22       3     383 ..      10     374 ..       8     376 .. 0.79

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 6.3e-26
  MFS_1_like   3 slkilyFfffaalgsllPYltiylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklevs 100
                  l+++ F++  a +s + ++ i+ + + g++a + g+++++  ++++l +p++g+++D+fg +k ++ l + l + +    +fi               
  CTQ27248.1  10 LLSLFDFLYLFAWSSTMAFFVIWTTqHLGISATKTGLLYSVNAFIALLMQPFFGFISDKFGLKKRLIWLLVALLLPVG--PFFIY-------------- 92 
                 5778888888888888889999877589*************************************9876655544332..24444.............. PP

  MFS_1_like 101 vaqdvdaektfwilfllvvla.sfflaailvlldaatlkelgedrkdyGrqrlfGsvGyaifafitGilidhysvnllpysallyvlaallvisllvvl 198
                 v+  +   ++fw+ +ll  ++  ++ ++ + ++d+ + k  +  + +yGr+r++Gs+G+a +a i+G  id        +  l++v+aa+  + + + l
  CTQ27248.1  93 VYAPL-LVHNFWFGALLGGIYlGIIFNSGCGVIDSYIDKISRRYQFEYGRVRMWGSLGWAAAAWIVGKYIDSNPNLAFWLASLAIVIAAICFMLTKIEL 190
                 11112.678999999998887357889********876666777778************************9877322233333333333333333333 PP

  MFS_1_like 199 ilnetekesklkvtkslqvllnilknpeviifllvalilgmswgiienFlflYL.kel...gasntllGslvalgvvaeiplfffaeklleklGhvkll 293
                 +  +    ++lkv    ++ l++ kn + +++ll++l++  ++  +++ +  Y+  +    +  n   G+l  ++v +e  ++ ++ + ++++G+ + l
  CTQ27248.1 191 TDADVARSESLKV----SHALELAKNGQFWMLLLFTLFVTQIYDTYDQQFAQYFsLQFptpEEGNRWYGILASIQVCGETLFLCLMPWFVNRTGAKWAL 285
                 3333333333333....56899*******999999888777777766554445424431114557899******************************* PP

  MFS_1_like 294 iiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaiflF 383
                 iia l++ +r ++ a+   ++++  + ++h++   l+ +++ ++++  + ++l +t+  ll+ +  ++ +a+ s ++G+l+d+ + + ++
  CTQ27248.1 286 IIAGLIMSVRIVGSAVPLGPVWIGAVKMMHALEKPLILVSVFKFIAANFDHKLSSTVY-LLVLFVASIATAIYSPLAGYLYDTIGFANTY 374
                 *****************************************************99986.888899*****************99888777 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6  33.2   2.2e-18     8e-15       6     294 ..      16     302 ..      11     308 .. 0.71
   2 !   27.9  11.6     3e-10   1.1e-06      34     183 ..     254     401 ..     236     411 .. 0.83

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 2.2e-18
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllf....a....sslwlllvlrvlqG 96 
                 fl+ +a+s +++++ ++ +++lgis++  gll+++ a+ a+++++++G++sd+fG ++ l++ l++++l  + ++f    a    ++   ++++ +l G
  CTQ27248.1  16 FLYLFAWSSTMAFFVIWTTQHLGISATKTGLLYSVNAFIALLMQPFFGFISDKFGLKKRLIWLLVALLLP-VGPFFiyvyApllvHN---FWFGALLGG 110
                 8999***************************************************888555555555555.4444322223556677...779999999 PP

       MFS_1  97 lgagalfpagaaliadwfpk..eergraigllsagfslGailg.pllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtg 192
                 +  g++f +g  +i  +  k  ++  + +g + +  slG + +  ++g ++ s  +  ++f+++ ++ ++a+++  + l+  + + + ++  e +   +
  CTQ27248.1 111 IYLGIIFNSGCGVIDSYIDKisRRYQFEYGRVRMWGSLGWAAAaWIVGKYIDS--NPNLAFWLASLAIVIAAIC--FMLTKIELTDADVARSESL---K 202
                 99999999999999999999966788999***********7772555556664..5799**************8..5555555555555544441...3 PP

       MFS_1 193 paplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls...........glllaglllallalvgail....allagrlsdrlgrrrr 276
                  ++      +l k+ ++w+ll+  l+++ ++ ++ + +  y    + l            g         +la + +++      l  ++++r+g++++
  CTQ27248.1 203 VSH----ALELAKNGQFWMLLLFTLFVTQIYDTYDQQFAQY----FSLQfptpeegnrwyG---------ILASIQVCGetlfLCLMPWFVNRTGAKWA 284
                 333....4458888889722222222223555555555555....4444445577543333.........222222222222244899999******** PP

       MFS_1 277 lllallllllaalglall 294
                 l++a+l++++  +g a+ 
  CTQ27248.1 285 LIIAGLIMSVRIVGSAVP 302
                 ********9977776665 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 3e-10
       MFS_1  34 igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga.galfpagaaliadwfpkeergraigllsagf 130
                 +g+l+++   g  ++  ++ ++++r G+++ l+++ l++++  ++++ a +l  +++ +  ++ + +  +++ ++  +ia+ f ++  + ++ l+   +
  CTQ27248.1 254 YGILASIQVCGETLFLCLMPWFVNRTGAKWALIIAGLIMSVR-IVGS-AVPLGpVWIGAVKMMHALEkPLILVSVFKFIAANFDHKLSSTVYLLVLFVA 350
                 6899**************************888888888887.5555.35666556666667777777******************************* PP

       MFS_1 131 slGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrks 183
                 s+++++  +l+g+l++ +g+  +++il+ v+ l+ ++ ++ l ++  ++++k+
  CTQ27248.1 351 SIATAIYSPLAGYLYDTIGFANTYLILGSVAGLFTLISIFTLQDK--REPKKT 401
                 **********************************99844444333..333333 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3  24.7   7.9e-07    0.0028       6     303 ..      15     296 ..      11     334 .. 0.75
   2 !    6.9   2.0   0.00054       1.9     260     309 ..     342     391 ..     332     406 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.9e-07
       MFS_2   6 alaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsa.iilavsiillftppelsqsakfiwllvt 103
                 ++ + ++++   +++ i  t+ lg+sa+  gl++ v  ++ +++ p++G+++dk  +   +r+ wll+++ ++ + ++i +++p+         w+ ++
  CTQ27248.1  15 DFLYLFAWSSTMAFFVIWTTQHLGISATKTGLLYSVNAFIALLMQPFFGFISDKFGL--KKRLIWLLVALlLPVGPFFIYVYAPLL----VHNFWFGAL 107
                 6778889999999*******************************************9..88999*999861466777777777777....445566665 PP

       MFS_2 104 yillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervemrkk 202
                 +    i    +  + +  +    ++ + R ++   r  + + g+++ a+ a ++     +   ++   +++a++  ++++++++++ +   + +     
  CTQ27248.1 108 L--GGIYLGIIFNSGCGVIDSYIDKISRRYQFEYGR--VRMWGSLGWAAAAWIVGKYIDS---NPNLAFWLASLAIVIAAICFMLTKIELTDADV---- 195
                 4..457777777788877777766666666665444..4666778888888888777776...77778888888888888888888666666654.... PP

       MFS_2 203 ekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlg....ngsaasvfllvvtisallgiplwqplakrlgkkntyllgal 297
                    ++ e+l+++ +l e+ +n +f++lll+ l+++  +  +   ++ y+          ++++ +++ + + + +l++ l+++++ r g k + +++ l
  CTQ27248.1 196 ---ARSESLKVSHAL-ELAKNGQFWMLLLFTLFVTQIYDTYDQQFAQYFSLQFPtpeeGNRWYGILASIQVCGETLFLCLMPWFVNRTGAKWALIIAGL 290
                 ...599999999888.578999**********9999999998888776666554111245555555555677777**************9955555444 PP

       MFS_2 298 ltivll 303
                 ++ v  
  CTQ27248.1 291 IMSVRI 296
                 443322 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00054
       MFS_2 260 aasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlll 309
                  + ++l+v+ i++++ +pl+ +l   +g  ntyl+  +++ +++++ ++ 
  CTQ27248.1 342 VYLLVLFVASIATAIYSPLAGYLYDTIGFANTYLILGSVAGLFTLISIFT 391
                 45566777778888**************9999999999999888887765 PP

>> TraQ  Type-F conjugative transfer system pilin chaperone (TraQ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.019        67      19      69 ..      84     134 ..      76     144 .. 0.82
   2 ?    7.9   0.4   0.00081       2.9      22      69 ..     151     198 ..     133     214 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.019
        TraQ  19 lslG.vwfhlvarlvyrkPelavllaeilavglvliGgyrildaliarvade 69 
                 l +G +++++ a l  ++ ++  ll+ i  +g++   g  ++d++i+++++ 
  CTQ27248.1  84 LPVGpFFIYVYAPLLVHNFWFGALLGGIY-LGIIFNSGCGVIDSYIDKISRR 134
                 55672456788999999999999999875.889999999*********9985 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00081
        TraQ  22 GvwfhlvarlvyrkPelavllaeilavglvliGgyrildaliarvade 69 
                  +   +v++ + ++P+la+ la +  v+ +++     ++   a+va+ 
  CTQ27248.1 151 AAAAWIVGKYIDSNPNLAFWLASLAIVIAAICFMLTKIELTDADVARS 198
                 445679***************998777666655555455555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       889  (0.0495845); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 2931.83
//
Query:       CTQ27249.1  [L=127]
Description: biofilm regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-73  244.0   1.5    2.7e-73  243.8   1.5    1.0  1  YliH      Biofilm formation protein (YliH/bssR)


Domain annotation for each model (and alignments):
>> YliH  Biofilm formation protein (YliH/bssR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.8   1.5   1.5e-77   2.7e-73       1     126 []       1     126 [.       1     126 [. 0.99

  Alignments for each domain:
  == domain 1  score: 243.8 bits;  conditional E-value: 1.5e-77
        YliH   1 mvvdrlrrdllnklinaridlaaylqlrkakGymsvsesdhlrdnlfelnrelrdkalrlqlaldqeerdalrraeealaaaavclmsGhhdcplviav 99 
                 m+vdrl+r+ll+klina+id++aylqlrkakGymsvse+dhlrdnlfel+re++++a+rlq+a+++eerd+lr+a+e++aaaa+clmsGhhdcpl+iav
  CTQ27249.1   1 MTVDRLYRHLLQKLINANIDIDAYLQLRKAKGYMSVSENDHLRDNLFELCREMHAQAPRLQNAISPEERDVLRLAGESVAAAALCLMSGHHDCPLYIAV 99 
                 99************************************************************************************************* PP

        YliH 100 nadklencltsltlsiqslkklapltk 126
                 n++kle+clt+lt++i++l+klap+t+
  CTQ27249.1 100 NVEKLERCLTGLTSNIHKLNKLAPITH 126
                 *************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 931.58
//
Query:       CTQ27250.1  [L=369]
Description: PQQ-dependent aldose sugar dehydrogenase precursor (asd) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.8e-130  432.8   0.0     1e-129  432.7   0.0    1.0  1  GSDH      Glucose / Sorbosone dehydrogenase


Domain annotation for each model (and alignments):
>> GSDH  Glucose / Sorbosone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  432.7   0.0  5.6e-134    1e-129       1     332 []      32     364 ..      32     364 .. 0.98

  Alignments for each domain:
  == domain 1  score: 432.7 bits;  conditional E-value: 5.6e-134
                 -S-EEEEEE-TT.S-EEEEETTTEEEEEE.TTEE.EEEEE-.----STT-SEEEEEE-TTTTTS-EEEEEEEE-...TTSSEEEEEEEEE-SS..-EEE CS
        GSDH   1 lehPwslaflpd.grlLvtersGrlrlvkadgklkepiagvpevvakgqgGlldvalhpdfaenrlvYltyaeaeeekggagtavararlsedeaaled 98 
                 l +Pw++aflpd + +L+t r G+l++++    l++piagvp+v+a+gqgGlldval+pdfa++r v+l+yae+ +++g+agtav+ +rlsed+++l++
  CTQ27250.1  32 LAQPWGMAFLPDdQGILITLRGGELKCWQPGKGLSAPIAGVPQVWANGQGGLLDVALAPDFAQSRRVWLSYAES-DASGKAGTAVGYGRLSEDATQLTN 129
                 579********97899*************88888**************************************88.889999****************** PP

                 EEEEEEEE---TT-------EEE-TTS-EEEE---TT-GGGGG-TT-SSSEEEEE-TTSSB-TT-TTTT-TTS-TTEEEE--SCE---EE-TTT--EEE CS
        GSDH  99 levifrqepkvesgahfGsrlafgpdgtLfvtvGdrskreeaqdlsselGkilrlnkdGsvpadnpfvgkagakpeiwsyGhRnpqGlaldpdtgeLwe 197
                 ++v+frq+pk + g+hfG+rl+f+  g+Lf+++G++++r++aqdls+ +Gk++rl++ G vp+dnpfvg+a a+peiw+yG RnpqG+a++p++++Lw 
  CTQ27250.1 130 FTVVFRQQPKLSVGNHFGGRLVFDGKGYLFIGLGENNQRATAQDLSKLQGKVVRLTETGGVPPDNPFVGRAVARPEIWAYGIRNPQGMAMNPWSEALWL 228
                 *************************************************************************************************** PP

                 EEE--SSSEEEEEE-TT-B--TTT-S......S-.......-S-TTS---SEEETT---EEEEEEE........TTEEEEEETTTTEEEEEEEEEEEEE CS
        GSDH 198 sEhGprggDelnlieaGknYGWplvsygeeYsgkkiges..etreglekpvlvwtpsiapsglafytgdafpewkgdllvggLksqsllrleldegekv 294
                 +EhGprggDe+n+++aGknYGWpl+++g +Ysg +i+e+  +t +g+e p++vw  s ++sg+afy+  +fp+w+++l++g+Lk++sl++l +d g++v
  CTQ27250.1 229 NEHGPRGGDEINIPQAGKNYGWPLATHGINYSGLPIPEAkgKTVPGTEPPLYVWPVSPGVSGMAFYSAPTFPQWQHKLFIGALKETSLIVLAVD-GNQV 326
                 **********************************99998889****************************************************.78** PP

                 EEEEEEEESS-.-EEEEEE-TTS-EEEEE-TTTTT... CS
        GSDH 295 veeerlleelgeriRdVeqgpdGalyvltdeedgkllr 332
                 +ee rlle +g+riRdV++gpdG+lyvltde++g+llr
  CTQ27250.1 327 REEGRLLEARGKRIRDVRVGPDGYLYVLTDESNGELLR 364
                 ***********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2859.68
//
Query:       CTQ27251.1  [L=208]
Description: putative glutathione S-transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-16   58.7   0.0      1e-15   57.9   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    9.8e-15   54.7   0.0    1.7e-14   53.9   0.0    1.4  1  GST_N     Glutathione S-transferase, N-terminal domain
    1.9e-12   47.3   0.0    3.9e-12   46.3   0.0    1.5  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    7.8e-10   38.6   0.3    1.6e-09   37.6   0.3    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    3.2e-08   33.7   0.0    5.8e-08   32.9   0.0    1.4  1  GST_C     Glutathione S-transferase, C-terminal domain
    0.00012   22.8   0.0    0.00031   21.4   0.0    1.6  2  GST_N_4   Glutathione S-transferase N-terminal domain
     0.0014   18.8   0.0     0.0024   18.0   0.0    1.3  1  GST_C_3   Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.016   15.6   0.0      0.028   14.7   0.0    1.4  1  Tom37     Outer mitochondrial membrane transport complex prot
      0.042   14.4   0.0      0.067   13.8   0.0    1.3  1  GST_C_5   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0     5e-19     1e-15       3      72 ..       6      80 ..       4      90 .. 0.86

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 5e-19
                S-TTSHHHHHHHHHHHHHT--EEEE---...TTTTHHHHHHH-TT--SSEEETT..S-EEESHHHHHHHHHHHH- CS
     GST_N_3  3 gfpaSpyarrvrlaLnekglpvevvevt...pgehdeellaknplgkvPvLedd..gealtdSlaIidyLeelyp 72
                g + S ++++vr++L+e++lp++        + +hd+e+la+np+g vP L+dd  g +l++S  Ii+yL  +y+
  CTQ27251.1  6 GRNNSTNVKKVRWVLEELDLPYQQILAGlefGLNHDPEYLAMNPNGLVPLLKDDatGVVLWESNTIIRYLAAQYG 80
                567899*****************766642234447*****************997777**************997 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   8.3e-18   1.7e-14       3      75 ..       2      76 ..       1      77 [. 0.97

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 8.3e-18
                EEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET..TEEEESHHHHHHHHH CS
       GST_N  3 ltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn..gkkltESraIleYia 75
                +tl++  +s ++ ++r++l++++++y+++   +e+g +++pe+l +np+g vP+L d+  g +l+ES+ I +Y+a
  CTQ27251.1  2 ITLWGRNNSTNVKKVRWVLEELDLPYQQILAGLEFGLNHDPEYLAMNPNGLVPLLKDDatGVVLWESNTIIRYLA 76
                699**********************************************************************98 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0     2e-15   3.9e-12       3      69 ..      11      77 ..       9      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 2e-15
                HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-C.TTEEEESHHHHHHHHHH CS
     GST_N_2  3 PwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdk.dgqvineSseIlrylet 69
                  + +v+++l+++ l+++ +   l + g +  +e+++ np+g VP+L d+ +g v++eS  I+ryl++
  CTQ27251.1 11 TNVKKVRWVLEELDLPYQQILAGL-EFGLNHDPEYLAMNPNGLVPLLKDDaTGVVLWESNTIIRYLAA 77
                5678**************777533.34667779****************98999************86 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.3   8.3e-13   1.6e-09       2      68 ..     128     191 ..     127     192 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 8.3e-13
                 HHHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHHH CS
     GST_C_2   2 aaveraleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdireaypnlraWle 68 
                 aa+++   + +a ++ l+++La+ p+l G+q++l Dia+apf++ l  +    d ++  p+l++W++
  CTQ27251.1 128 AAIAAGISACEALFAMLDDELAKTPWLSGEQFGLGDIAVAPFVYNLLSIL---DSWQPRPHLQRWYQ 191
                 6777778888999*************************************...99***********8 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   2.9e-11   5.8e-08      30      93 .]     136     197 ..     108     197 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.9e-11
                 HHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C  30 kvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerimarp 93 
                 +  + +++l+ el+k  +l G++++l Dia++p++  l ++  +   +  p+l++w++ i++rp
  CTQ27251.1 136 ACEALFAMLDDELAKTPWLSGEQFGLGDIAVAPFVYNLLSILDSW--QPRPHLQRWYQQISQRP 197
                 567899****************************99777776666..58**************9 PP

>> GST_N_4  Glutathione S-transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.5e-07   0.00031      12      89 ..      31     110 ..      28     115 .. 0.87
   2 ?   -2.9   0.0       5.9   1.2e+04      74      86 ..     137     149 ..     134     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.5e-07
     GST_N_4  12 magipyelepssn.e.mhaspkgklPfielngel.liadsefiieflkekgvdld.aelse.eqkadaralkalveeklynal 89 
                 +ag+++ l+++ +   m   p+g +P ++ + +  ++ +s+ ii++l ++  ++d  +l + +q+a+ + ++ + + +l +a+
  CTQ27251.1  31 LAGLEFGLNHDPEyLaM--NPNGLVPLLKDDATGvVLWESNTIIRYLAAQY-GVDrLWLAApAQRAQGEKWMDWSNGTLSPAH 110
                 68888998888874445..9**********77778***************9.99988999889**********9999998886 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.9
     GST_N_4  74 aralkalveekly 86 
                  +al a++++ l+
  CTQ27251.1 137 CEALFAMLDDELA 149
                 5789999999887 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.2e-06    0.0024      34      91 ..     142     198 ..     125     203 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.2e-06
                 HHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH.TCCCC-HHHHHHHHHHHTSHH CS
     GST_C_3  34 kyfekvlkkkgggylvgdklTyADlalfqvldgleea.ealkkfpklkalyervearpk 91 
                 + ++  l+  ++++l g+++ + D+a+  ++ +l ++ ++ ++ p+l+++y+++++rp+
  CTQ27251.1 142 AMLDDELA--KTPWLSGEQFGLGDIAVAPFVYNLLSIlDSWQPRPHLQRWYQQISQRPA 198
                 44444455..788************************5444999*************96 PP

>> Tom37  Outer mitochondrial membrane transport complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.4e-05     0.028      26      88 ..      47     109 ..      27     114 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
       Tom37  26 lsptgeLPaLkdgegtwi.sgfdnIveylrkkseesdlda..slsakekadatAlisllesklapl 88 
                 + p+g +P+Lkd+ +  +  + ++I++yl +++    +d+    +++++a+ + ++ + + +l+p+
  CTQ27251.1  47 MNPNGLVPLLKDDATGVVlWESNTIIRYLAAQY---GVDRlwLAAPAQRAQGEKWMDWSNGTLSPA 109
                 59**********9955555***********984...445443667888999999988888888876 PP

>> GST_C_5  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.4e-05     0.067      17      78 ..     114     178 ..     112     202 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.4e-05
                 HHHHHHCTT-HHHHHHHHHHHHHHHHHHCCHT...SSSSECCECC--HHHHHHHHHHHHHHHHCC CS
     GST_C_5  17 lfglvrdplseekrkelddnaayledllakhq...geGPyfldkelsmadvavvPflvrlkavls 78 
                 l+glvr p ++   +++    +  e l+a  +   ++ P+  ++++ ++d+av Pf+  l ++l 
  CTQ27251.1 114 LMGLVRTPPEQRDPAAIAAGISACEALFAMLDdelAKTPWLSGEQFGLGDIAVAPFVYNLLSILD 178
                 68899999666667777777777887776433225899******************998887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1804.98
//
Query:       CTQ27252.1  [L=403]
Description: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-96  322.5   0.7    1.9e-96  322.2   0.7    1.1  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase
    8.5e-23   80.4   0.1    1.4e-22   79.7   0.1    1.4  1  PBP5_C           Penicillin-binding protein 5, C-terminal dom
    1.4e-11   44.4   0.1      2e-11   43.9   0.1    1.2  1  Beta-lactamase2  Beta-lactamase enzyme family
  ------ inclusion threshold ------
       0.02   14.2   0.7       0.45    9.7   0.1    2.1  2  Beta-lactamase   Beta-lactamase


Domain annotation for each model (and alignments):
>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.2   0.7  4.3e-100   1.9e-96       5     240 ..      35     268 ..      31     269 .. 0.98

  Alignments for each domain:
  == domain 1  score: 322.2 bits;  conditional E-value: 4.3e-100
                    S---.--SSSEEEEEETTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCS..GTTSSTTS-TTT-EEEHHHHHH CS
  Peptidase_S11   5 asepleiaaksailvdantGkvLyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgn..nkevsniflkkgskvsvkdLle 98 
                    + +p +i+a+++il+d+++G vL e nade++++ASltK+mT+y+v++a+k+gk+k++d+vt+++da+a+gn   +++s +flk+g++vsv+dL++
     CTQ27252.1  35 PDAP-SIDARAWILMDYASGMVLSEGNADEKLDPASLTKIMTSYVVGQAIKAGKIKLTDMVTVGRDAWATGNpaLRGSSVMFLKPGMQVSVEDLNK 129
                    5677.9******************************************************************999********************* PP

                    HHHCC--HHHHHHHHHHHHSSHHHHHHHHHHHHHHTT-TT-B-SSSSSTSHTTCBB-HHHHHHHHHHHHHHHHHHHHGGGESEEEETTECTEEEES CS
  Peptidase_S11  99 gllvssgNdAavalAekiaGsekaFvkmMnkkakelGlkntkfvnptGLdnenqvssArdlailakallkdlpeelkitkeksltfngikklnykn 194
                    g++++sgNdA++a+A+++aGs++aFv +Mn +ak++Gl+nt+f +++GLd+++q+s+Ard+a+l+ka+++d+pee++++kek++tfn   k+++ n
     CTQ27252.1 130 GVIIQSGNDASIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALLTKAMIHDVPEEYAVHKEKEFTFN---KIRQPN 222
                    **************************************************************************************9...****** PP

                    STGGGGTTTSEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEES CS
  Peptidase_S11 195 knkllyrktlnvdglktGytkkAgeclvatavenqmrlisVvlnak 240
                    +n+ll++++ln dg+ktG+t  Ag++lv++a++++mrli+Vvl+ k
     CTQ27252.1 223 RNRLLWSSNLNADGVKTGTTAGAGYNLVSSATQGDMRLIAVVLGTK 268
                    *******************************************987 PP

>> PBP5_C  Penicillin-binding protein 5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.1   3.2e-26   1.4e-22       1      91 []     288     379 ..     288     379 .. 0.99

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 3.2e-26
                 EEEEEEEXTTCESEEEEEESSSSSEEEEEESSXEEEEEETTHCCTEEEEEEE.SSSEESGBGTTSEEEEEEEEETTEEEEEEEEEESSXBXB CS
      PBP5_C   1 FetkklykkgkvvktvsvlkgkekeVplvakediyvtvkkgekkklkakvel.kksleapikkGqkvGklkvyldgkliakvplvakedvek 91 
                 Fet++++k + ++ t++v+ g+ +e +l+a e  ++t++kg+ k+lka+++l + +l+ap++kGq+vG++ ++l++k+i + pl++ e+v++
  CTQ27252.1 288 FETVTPIKPDATFVTQRVWFGDSNEAKLGAGEAGSITLPKGQLKNLKASYTLnQPQLTAPLEKGQVVGTIDFKLNDKTIEQRPLIVMESVKE 379
                 9*****************************************************************************************96 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.1   4.5e-15     2e-11      10     143 ..      60     200 ..      51     253 .. 0.78

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 4.5e-15
                      STTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHH......HTSSSTSGGGSTTSEEEHHHHHHHHHHTT-HHHHHHHHHHH.T.HHH CS
  Beta-lactamase2  10 nadeefpaaStiKvpillalleavlegklslderltltaed......ivggsgilqklpgktlslrdlltlmiavSDNtAtnlLidrl.g.lea 95 
                      nade++  aS+ K++  + + +a+++gk++l++ +t+ +++         gs ++  +pg ++s++dl + +i++S N A+ ++ d++ g ++a
       CTQ27252.1  60 NADEKLDPASLTKIMTSYVVGQAIKAGKIKLTDMVTVGRDAwatgnpALRGSSVMFLKPGMQVSVEDLNKGVIIQSGNDASIAIADYVaGsQDA 153
                      9***************************************977766655667666444566***************************855666 PP

                      ....HHHHHHHCTHTTSB--SHTTCCHHHTTSSTTEE-HHHHHHHHHHHHHT CS
  Beta-lactamase2  96 ....vnawlkelglretrlrrklpdleaadkdkrntttardlarllealarg 143
                          +n ++k++gl++t++ + +++l+a    +   +tard+a l +a++ +
       CTQ27252.1 154 fvslMNGYAKKMGLTNTTFMT-VHGLDA----PGQFSTARDMALLTKAMIHD 200
                      333368899999999998774.456654....999************99986 PP

>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1    0.0001      0.45      46      80 ..      61      98 ..      57     128 .. 0.78
   2 ?    2.3   0.0     0.017        78     218     276 ..     180     253 ..     156     263 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0001
                    TTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBG...G CS
  Beta-lactamase 46 adtlfriaSvtKtftaaavlqlveeGkldLddpV...s 80
                    ad+  + aS+tK +t+ +v q + +Gk+ L d V    
      CTQ27252.1 61 ADEKLDPASLTKIMTSYVVGQAIKAGKIKLTDMVtvgR 98
                    66777779************************995552 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.017
                     TTBEEEEHHHHHHHH...................HHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEE CS
  Beta-lactamase 218 agglistardlarfl...................glalegglllsaetlaqltaklssgttrpagiraglglGwvlad 276
                     a g +stard+a +                    ++    +++ +++  + l++++ +      g++ag g+ +v + 
      CTQ27252.1 180 APGQFSTARDMALLTkamihdvpeeyavhkekefTF----NKIRQPNRNRLLWSSNLNADGVKTGTTAGAGYNLVSSA 253
                     3377********999776666666665555544433....45555555555555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3353.08
//
Query:       CTQ27253.1  [L=252]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-41  139.6   0.0    1.2e-40  139.1   0.0    1.2  1  DeoRC       DeoR C terminal sensor domain
    2.2e-13   49.7   0.0    3.5e-13   49.1   0.0    1.4  1  HTH_DeoR    DeoR-like helix-turn-helix domain
     0.0035   17.3   0.3     0.0056   16.6   0.3    1.3  1  HTH_11      HTH domain
  ------ inclusion threshold ------
      0.014   15.7   0.0      0.034   14.5   0.0    1.7  1  HTH_31      Helix-turn-helix domain
      0.015   15.3   0.1      0.024   14.6   0.1    1.4  1  HTH_Mga     M protein trans-acting positive regulator (MGA) H
      0.017   14.9   0.2      0.017   14.9   0.2    1.7  2  HTH_23      Homeodomain-like domain
      0.036   13.9   0.1      0.094   12.5   0.1    1.7  1  HTH_8       Bacterial regulatory protein, Fis family
      0.062   12.8   0.1       0.16   11.5   0.1    1.7  1  Sigma70_r4  Sigma-70, region 4


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1   0.0   5.2e-44   1.2e-40       3     159 ..      76     232 ..      74     233 .. 0.99

  Alignments for each domain:
  == domain 1  score: 139.1 bits;  conditional E-value: 5.2e-44
       DeoRC   3 aeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflgan 101
                 +eeKrr A+ Aa+l+e +++ f+d+GtTt ++++a+++  + t v++sln++ +L+ek++++ +l+GGe+++++ +++  + e++l++++ d+af +a+
  CTQ27253.1  76 VEEKRRAARHAAALLEAHQMAFFDCGTTTPWIIDAIDDALPFTGVCYSLNTFLALQEKPQCRAVLCGGEFHASNAIFMPLSLEDTLSHLSPDIAFYSAA 174
                 69************************************************************************************************* PP

       DeoRC 102 gidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitD 159
                 gid e+g+t+ ++ee  vk+ ++++ar  +l++D+sKfgk+ ++r++al ++d++ +D
  CTQ27253.1 175 GIDCEQGATCYNLEELPVKHWAMRHARYHVLVVDHSKFGKVRPARMGALAKFDVIASD 232
                 *****************************************************99887 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   1.6e-16   3.5e-13       1      54 [.       8      58 ..       8      61 .. 0.92

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 1.6e-16
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsi 54
                Ri q+++ lk+++kl+++e++ llgvSe+TiRRDLn ++ +++     GG+ ++
  CTQ27253.1  8 RISQLIQALKRSDKLHLKEAASLLGVSEMTIRRDLNGHSGPVV---LLGGYIVL 58
                99*************************************9999...77777766 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   2.5e-06    0.0056       1      36 [.       8      42 ..       8      44 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.5e-06
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdI 36
                R +q+++ L+++++ +  +e A  L+vS++t+rrd+
  CTQ27253.1  8 RISQLIQALKRSDK-LHLKEAASLLGVSEMTIRRDL 42
                7889*****77777.********************8 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.5e-05     0.034       2      40 ..       9      47 ..       8      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrg 40
                + +l +al +   L ++e+A +lgvse t++r  +G  g
  CTQ27253.1  9 ISQLIQALKRSDKLHLKEAASLLGVSEMTIRRDLNGHSG 47
                678999999999***********************9876 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   1.1e-05     0.024       9      42 ..      11      43 ..       3      44 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.1e-05
     HTH_Mga  9 kLlelLteneksltldelakeLglseltlqsdis 42
                +L+ +L   ++ l+l+e+a+ Lg se t++ d++
  CTQ27253.1 11 QLIQALKR-SDKLHLKEAASLLGVSEMTIRRDLN 43
                67777777.99*******************9985 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.2   7.8e-06     0.017      10      36 ..      12      40 ..       3      42 .. 0.80
   2 ?   -3.4   0.2       4.4   9.8e+03       3      12 ..      81      90 ..      77      94 .. 0.51

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.8e-06
      HTH_23 10 illllae..GlsvreIAreLgvsrrTvyr 36
                 +++l++  +l  +e+A +Lgvs++T++r
  CTQ27253.1 12 LIQALKRsdKLHLKEAASLLGVSEMTIRR 40
                6666665669*****************98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.4
      HTH_23  3 sereRlrill 12
                ++ +++ +ll
  CTQ27253.1 81 RAARHAAALL 90
                3344444444 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.2e-05     0.094      10      37 ..      12      40 ..      10      42 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.2e-05
                HHHHHHHTT.T-HHHHHHHHTS-HHHHHH CS
       HTH_8 10 IeaALertg.GnkskAArlLGisRrtLyr 37
                +++AL+r++  ++++AA lLG+s +t++r
  CTQ27253.1 12 LIQALKRSDkLHLKEAASLLGVSEMTIRR 40
                688888885379**************998 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     7e-05      0.16      19      39 ..      20      40 ..       6      42 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7e-05
                TT--HHHHHHHHTS-HHHHHH CS
  Sigma70_r4 19 eglTleEIgerlgiSrerVrq 39
                ++l l+E +  lg+S++++r+
  CTQ27253.1 20 DKLHLKEAASLLGVSEMTIRR 40
                67889***************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2208.51
//
Query:       CTQ27254.1  [L=197]
Description: undecaprenyl pyrophosphate phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-14   52.5  11.2      8e-14   51.6  11.2    1.5  1  PAP2      PAP2 superfamily
    5.2e-10   39.3  20.2    6.5e-09   35.7  19.9    2.1  1  PAP2_3    PAP2 superfamily
  ------ inclusion threshold ------
        7.1    7.1  16.3       0.61   10.5   7.6    2.6  3  DUF2628   Protein of unknown function (DUF2628)


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6  11.2   1.3e-17     8e-14       2     132 ..      56     168 ..      54     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.3e-17
        PAP2   2 llalllalalaalltsvlKdlvgrpRPfflaeetkldtqvstletseskeakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlval 100
                 +++l+lal+++  ++ ++ +l+   RPf++ +      +            ++sfPS H +++f++al++ ++ r +           +l++ a+ +a+
  CTQ27254.1  56 VFKLMLALTISLTVSWAIGHLYPHDRPFVAGVGYNFLHHAA----------DDSFPSDHGTVSFTFALAFLFWHRLWSGA--------LLMAIAAAIAW 136
                 578899999999998899999999****9999999888843..........47**************9988777777776........99999****** PP

        PAP2 101 sRlylgvHflsDvlaGlliGialaalayrlvq 132
                 sR+ylgvH++ D ++Gll G +  + a  +++
  CTQ27254.1 137 SRVYLGVHWPLDMVGGLLAGMCGCLGAALIWH 168
                 *******************9988776666655 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7  19.9   1.1e-12   6.5e-09      36     185 ..      32     157 ..       4     163 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.1e-12
      PAP2_3  36 Yaslhfqvtllvlvllf.lrrrerlreflttlllatllgllvyalfPaagPrlleeagfvdtvaaaslagalrdgasravllrgtienglaafPSlHva 133
                  + ++++ +l+v+++l+  ++r+++ +++++l +++++++++ +l+P ++P+++               g         v ++  ++++  +fPS H +
  CTQ27254.1  32 KDLILIVPLLVVTLWLWgPAQRQMVFKLMLALTISLTVSWAIGHLYPHDRPFVA---------------G---------VGYNFLHHAADDSFPSDHGT 106
                 56678899999****************************************777...............2.........2233333455568******* PP

      PAP2_3 134 wallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvalal 185
                 +++ +ala + ++++ + ++l+++++++++++ v++g H  +D+++G++ ++
  CTQ27254.1 107 VSFTFALA-FLFWHRLWSGALLMAIAAAIAWSRVYLGVHWPLDMVGGLLAGM 157
                 ********.66666777******************************99876 PP

>> DUF2628  Protein of unknown function (DUF2628)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.9      0.06   3.6e+02      51      87 ..      36      72 ..      21      78 .. 0.62
   2 ?   10.5   7.6    0.0001      0.61      27      83 ..     107     161 ..     103     180 .. 0.80
   3 ?   -1.9   0.0      0.74   4.4e+03      27      47 ..     167     187 ..     159     188 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.06
     DUF2628 51 iavavsvvlavlgfsdavrlllalliaillgleansl 87
                + v + vv+  l  +++ +++++l++a+ ++l+++++
  CTQ27254.1 36 LIVPLLVVTLWLWGPAQRQMVFKLMLALTISLTVSWA 72
                4455555555555555666667777777777776664 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0001
     DUF2628  27 wAfffgfiwLlyrklwlkalvllviavavsvvlavlgfsdavrlllalliaillgle 83 
                 + f f   +L++++lw  +++l++ia a++   ++lg+ + + ++ + l+a + g  
  CTQ27254.1 107 VSFTFALAFLFWHRLWS-GALLMAIAAAIAWSRVYLGVHWPLDMV-GGLLAGMCGCL 161
                 5799************7.667899******************995.55555555544 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.74
     DUF2628  27 wAfffgfiwLlyrklwlkalv 47 
                 w  f + ++   ++l++ +++
  CTQ27254.1 167 WHTFGPALYHQLQRLYRLCFS 187
                 445666777778888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1530.33
//
Query:       CTQ27255.1  [L=410]
Description: multidrug efflux system protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-27   94.4  41.1    6.4e-27   94.4  41.1    1.3  2  MFS_1     Major Facilitator Superfamily
    9.5e-06   24.7  32.3    1.1e-05   24.5  11.6    2.7  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4  41.1   7.2e-31   6.4e-27       6     350 ..      27     362 ..      22     365 .. 0.71
   2 ?   -5.0   1.0       1.2   1.1e+04     343     351 ..     382     390 ..     375     399 .. 0.40

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 7.2e-31
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfp 104
                 f ++++ +++ p +  a+ +++++    + + +t+y +g ++++ +lG+lsdr+Grr+v+l+g+++f++++l+ l+a+++  + +lr+lqG+  +++ +
  CTQ27255.1  27 FSTYIGNDMIQPGML-AVVQEFQVGNEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLTGVVWFIVTCLATLLAQTIEQFTLLRFLQGISLCFIGA 124
                 88999999******9.9******99999******************************************66666767777****************** PP

       MFS_1 105 agaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkal 203
                 +g+a+i + f +    + ++l++  + ++++lgpl+g++ ++ l W+ +f+++a++++++f      +pe++++ + k +++e         +  ++++
  CTQ27255.1 125 VGYAAIQESFEEAVCIKITALMANVALIAPLLGPLVGAAWVHILPWEMMFVLFAVLAAISFFGLQRAMPETATRLGEKLSVKE----L---GR-DYRLV 215
                 ************************************************************88444555555555555555555....3...33.36667 PP

       MFS_1 204 lkdpvlwillialllfffgfsg....lltllplylqevlglsglllaglllallalvgailallagrls.drlgrrrrlllallllllaalglallavt 297
                 lk+  +   ++++l ++ ++s+      + +p+++ +    +++ ++ l ++++++++ ++ l+++rl  +r+ r  +++ + ++++ + l+ a + v+
  CTQ27255.1 216 LKNLRF---VAGALATG-FVSLpllaWIAQSPVIIISGEQATSYEYGMLQVPIFGALI-AGNLVLARLTaRRTVRSLIIMGGWPIMFGLILSAAATVVS 309
                 777744...33333333.2222323344444554333333333555555555555554.4478888888455555444444444444444444444444 PP

       MFS_1 298 .ssavllllvlvliGfglgfv..fpsllalasdlappeeagtasglfntagslgga 350
                  + ++++ ++l ++ fg g++      l+l ++ +     gt+s+++++++ l   
  CTQ27255.1 310 sHAYLWMTAGLSFYAFGIGLAnaGLVRLTLFASEM---SKGTVSAAMGMLQMLIFT 362
                 55677777788886666666621444455555555...456666666666665544 PP

  == domain 2  score: -5.0 bits;  conditional E-value: 1.2
       MFS_1 343 tagslggal 351
                 +++ lgg+l
  CTQ27255.1 382 LFNLLGGVL 390
                 222222221 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5  11.6   1.2e-09   1.1e-05      52     194 ..      58     195 ..      51     202 .. 0.92
   2 !    5.1  12.4   0.00093       8.3      52     152 ..     260     366 ..     228     373 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.2e-09
                 HHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHH CS
    Sugar_tr  52 vsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfG 150
                 + ++l+G+++ + ++g+l+dr+GR++++l+++v f++  + + +a+   ++e++++ R+l Gi++ ++ ++    i+E   ++++ +++ l      + 
  CTQ27255.1  58 MTAYLAGGMFLQWLLGPLSDRIGRRPVMLTGVVWFIVTCLATLLAQ---TIEQFTLLRFLQGISLCFIGAVGYAAIQESFEEAVCIKITALMANVALIA 153
                 56899*****************************************...9***********************************88888888888899 PP

                 HHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS--- CS
    Sugar_tr 151 ilvaaifglglnktsnadgwrillglqlvpallllill.lflPES 194
                  l++  +g++  ++     w +++ l +v+a + +++l   +PE+
  CTQ27255.1 154 PLLGPLVGAAWVHILP---WEMMFVLFAVLAAISFFGLqRAMPET 195
                 9***************...***********988888774566776 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.00093
                 HHTHHHHHHH.HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT..SS-TGGGGGHHHHHHHHHHHHHH...HHHHHHTTS-SCCHHHHHHHHH CS
    Sugar_tr  52 vsiflvGaii.GslfagllgdrfGRkkslliaavlfvigavlqaaakgk..nsvevlivgRvlvGigvGlasvl...vPmyisEiApkklRgalvslyq 144
                 + + ++Ga+i G l++  l+ r   ++ +++++   + g +l+aaa+     ++  +++g  +  +g+Gla++     ++++sE+++ ++  a+++l+ 
  CTQ27255.1 260 LQVPIFGALIaGNLVLARLTARRTVRSLIIMGGWPIMFGLILSAAATVVssHAYLWMTAGLSFYAFGIGLANAGlvrLTLFASEMSKGTVSAAMGMLQM 358
                 55566666543788899999999999******************99977778888999************9865222689******************* PP

                 HHHHHHHH CS
    Sugar_tr 145 laitfGil 152
                 l  t+Gi 
  CTQ27255.1 359 LIFTVGIE 366
                 ******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3183.36
//
Query:       CTQ27256.1  [L=270]
Description: putative phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-54  184.7   0.0    2.8e-54  184.5   0.0    1.0  1  Hydrolase_3  haloacid dehalogenase-like hydrolase
    6.1e-13   48.9   0.0    4.4e-09   36.2   0.0    2.2  2  S6PP         Sucrose-6F-phosphate phosphohydrolase
    6.1e-07   30.0   0.0    0.00056   20.4   0.0    2.6  2  HAD          haloacid dehalogenase-like hydrolase
    6.6e-06   26.6   0.3    0.00021   21.6   0.3    2.8  1  Hydrolase    haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.077   13.1   0.0       0.28   11.3   0.0    1.9  2  HAD_2        Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.5   0.0   7.8e-58   2.8e-54       1     255 []       6     259 ..       6     259 .. 0.95

  Alignments for each domain:
  == domain 1  score: 184.5 bits;  conditional E-value: 7.8e-58
                  EEEEIIIIIS-TTS---.HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEEECTTTEEEEE--B-HHHHHHHHHHHHHTT.C CS
  Hydrolase_3   1 ialDlDGTLlnsdkkis.ektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGaliddekgkilykstiskedvkeiikllkenn.v 96 
                  ia+D+DGT+l++ k+++ ++  +  ++++e++i +v+A+G++++++++++ e+  + +++a NG+++  + ++ +++ +++  +++ ++++l+    +
   CTQ27256.1   6 IAVDMDGTFLSDAKTYNrPRFLAQYQRMREQNIRFVVASGNQYYQLISFFPEIAHQIAFVAENGGWV-VSGNEDVFNCQLPVHHFNAVVDHLQTLPnI 102
                  89*************888*************************************************.***************************99* PP

                  EEEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHHHHHH CS
  Hydrolase_3  97 eillytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelksklnklltitssskgyleimpkgvsKgtalkk 194
                  ei+ ++++++y+ln    ++  k    ++ ++ e  ++++  d++i k+ +   ++ + e++ +l + l++ +t + ++ g+++++ +gv+K+++l+ 
   CTQ27256.1 103 EIIACGKRSAYTLNR--YNDALKTVAAKYYHRLELVDDFNHLDDTILKFGLNVPDSLIPEIQPKLHAALGDMVTAVATGYGSIDLIIPGVHKANGLRI 198
                  ***************..666666666666667777777777777****************************************************** PP

                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVakal 255
                  l+++++i+  ev+afGD+ NDieML++ag+g+Am+na+e vk++A+y  ++nne+GV++++
   CTQ27256.1 199 LQQRWGIEDHEVVAFGDSGNDIEMLQHAGFGFAMANAREDVKAVARYQAPHNNEEGVLQII 259
                  *********************************************************9987 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   8.6e-05      0.31       3      47 ..       4      49 ..       3      59 .. 0.84
   2 !   36.2   0.0   1.2e-12   4.4e-09     134     215 ..     159     240 ..     142     260 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.6e-05
                EEEEE-TBTTTB..S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HH CS
        S6PP  3 lllvsdLDntlv.dgdnealarlnelleaeerkdvllvfaTGRsld 47
                +l++ d+D+t++ d +  +  r+ +  + ++++++++v+a+G ++ 
  CTQ27256.1  4 KLIAVDMDGTFLsDAKTYNRPRFLAQYQRMREQNIRFVVASGNQYY 49
                5899********76777777889988889*************8765 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 1.2e-12
                 HHHHHHHHTTTS-.EEEEEETTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE-TT--HHHHH CS
        S6PP 134 keleqlLekreld.vkviyssgkdlDvlPkraskgeAlryLakkleleleqilvcGdsgnDeellignvlgVvVgnaqeellq 215
                  e++ +L+++  d v  +      +D++  +  k++ lr L++++++e ++++  GdsgnD+e+l++   g  ++na+e  ++
  CTQ27256.1 159 PEIQPKLHAALGDmVTAVATGYGSIDLIIPGVHKANGLRILQQRWGIEDHEVVAFGDSGNDIEMLQHAGFGFAMANARED-VK 240
                 555555555433314444555568999999***********************************************998.22 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0027       9.6      85     111 ..      21      47 ..      11      55 .. 0.84
   2 !   20.4   0.0   1.6e-07   0.00056     113     188 .]     159     224 ..     155     224 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0027
         HAD  85 lldpgalellaahraaGdrvvvvSggl 111
                 +++p +l+ +++ r++++r+vv Sg+ 
  CTQ27256.1  21 YNRPRFLAQYQRMREQNIRFVVASGNQ 47 
                 5789*********************95 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.6e-07
         HAD 113 plvepll.aelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpllr 188
                 p ++p+l a+lg d v a         tg  g ++ ++ g +k++ lr    ++ +gi+ +evva+GDs +D+++l+
  CTQ27256.1 159 PEIQPKLhAALG-DMVTAV-------ATGY-GSIDLIIPGVHKANGLRI--LQQRWGIEDHEVVAFGDSGNDIEMLQ 224
                 668889988888.555443.......5555.888889999888888888..88899*******************97 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.3   5.9e-08   0.00021     104     210 .]     116     227 ..       3     227 .. 0.51

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 5.9e-08
                 TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHH.HHHHH.TT.GGGE.SEEEEHHCES.STTT.SHHHHHHHHHHHTSTGGGEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.xx.xxxx.xxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetae.raanq.lG.ddyf.daviasdiet.vakp.spegkvaaireLqgkpeevamV 196
                 +   +a+ t+a +++ + e+++ +++L +  ++ +l   d+  +     ++  lG + +  +  ++s++   + ++ + +g++ + ++ +++ +ev+++
  CTQ27256.1 116 NRYNDALKTVAAKYYHRLELVDDFNHLDDTILKFGLNVPDSLIPEIqPKLHAaLGdMVTAvATGYGSID-LiIPGVhKANGLRILQQRWGIEDHEVVAF 213
                 555555555555555555555555555554445555555554222223444436632222122222222.25666624455555556669********* PP

                 ESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxx RF
   Hydrolase 197 GDgvnDaaalaaAg 210
                 GD+ nD+++l+ Ag
  CTQ27256.1 214 GDSGNDIEMLQHAG 227
                 ************98 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.82   2.9e+03       4      14 ..       9      19 ..       6      60 .. 0.71
   2 ?   11.3   0.0   7.7e-05      0.28     144     177 ..     199     232 ..     190     233 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.82
       HAD_2  4 DlDgTlldtee 14
                D+DgT l   +
  CTQ27256.1  9 DMDGTFLSDAK 19
                78888766544 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 7.7e-05
       HAD_2 144 aleklklkkeeviyvGDsptDieaakkagikvia 177
                 + ++ +++ +ev+ +GDs +Die  ++ag  +++
  CTQ27256.1 199 LQQRWGIEDHEVVAFGDSGNDIEMLQHAGFGFAM 232
                 5567799**********************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2106.55
//
Query:       CTQ27257.1  [L=400]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-23   82.4  59.2    6.2e-16   58.3  25.4    2.3  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.049   12.5  34.9       0.12   11.2  12.2    3.2  3  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5  30.7     3e-13   2.6e-09       3     241 ..      18     249 ..      10     253 .. 0.66
   2 !   58.3  25.4   6.9e-20   6.2e-16       4     170 ..     223     387 ..     220     400 .] 0.87

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 3e-13
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa...sslwlllvlrvlqGlg 98 
                 +++f++    ++ +++ ++a+ + l +s +e+g +l + ++g++ ++l  ++l+ rfG r+v+ +++ + +lg+l+l++a   +s +l++++ ++ G+ 
  CTQ27257.1  18 FMFFFIPGLLMASWATRTPAIRDLLALSTAEMGVVLFGLSVGSMSGILCSAWLVKRFGTRKVIRTTMSFAVLGMLVLSLAlwvTSAPLFAFGLAIFGAS 116
                 33344444444444444557777799***********************************************77777544545555777777777776 PP

       MFS_1  99 agalfpag...aaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpa 194
                  g++  a+   +a+i +  +k+  +++ g++s g+ +Ga +g+++ g+ +      a+ +++a++ +++ +   +   +  p+   k+ +e     ++ 
  CTQ27257.1 117 FGSAEVAInveGAAIEREMNKTVLPMMHGFYSFGTLFGAGVGMAVTGFGL----PAAPHILAAALVAILPI---AIAIRAIPDGTGKNAAEV----AHG 204
                 64443333111566666677777777777777777777777777777776....55556666666666655...444444444444444455....444 PP

       MFS_1 195 plvpawkallkdpvlwillialllfffgfsg..lltllplylqevlgls 241
                 +++  +  +++d +l  lli++++ +++f+   +  +lpl++++ +g+s
  CTQ27257.1 205 EAKG-LP-VWRDAQL--LLIGVIVLAMAFAEgsANDWLPLLMVDGHGFS 249
                 4555.33.5566656..4444444444444446***************9 PP

  == domain 2  score: 58.3 bits;  conditional E-value: 6.9e-20
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgaga 101
                 +++ +a+a + ++ +lpl++ + +g+sp++ +l++++++lg+ ++ + +G+++dr++r  v+  ++++ alg +l+++ + + w+  ++ +l G+ga++
  CTQ27257.1 223 IVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTLGRFTGGWFIDRYSRVAVVRGSAVMGALGiGLIIF-VDNPWVAGISVLLWGIGASL 320
                 566777888888889999**************************************9999************555555.688889999999******** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfll 170
                 +fp+ +++++d  p  + ++ +++++++  l++++gp+l g+l +++g r++++++ ++ ++a++++ +
  CTQ27257.1 321 GFPLTISAASDTGP--DAPKRVSVVAITGYLAFLVGPPLLGFLGEHFGLRSAMMVVLGLVMVAALVARA 387
                 ***********877..5***********************************99999999999884322 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  12.2   1.4e-05      0.12      44     181 ..      45     182 ..       5     191 .. 0.79
   2 ?    6.8   6.6   0.00029       2.6      49     118 ..     254     320 ..     246     339 .. 0.89
   3 ?    6.1   0.5   0.00048       4.3      56      93 ..     348     385 ..     328     394 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.4e-05
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS.-SCCHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiA.pkklRgalvs 141
                 s+  +g+++  ++vG++ G l + +l++rfG +k++ ++  ++v g ++  +a   +s  ++++g  + G + G a v + +     A   ++ +++  
  CTQ27257.1  45 STAEMGVVLFGLSVGSMSGILCSAWLVKRFGTRKVIRTTMSFAVLGMLVLSLALWVTSAPLFAFGLAIFGASFGSAEVAINV--EGAAiEREMNKTVLP 141
                 78899999999*************************************9999998899999999999999999999887765..334445666777778 PP

                 HHHHHHHHHHHHHHHHHHHHHTSS-.TTHHHHHHHCCHHHH CS
    Sugar_tr 142 lyqlaitfGilvaaifglglnktsn.adgwrillglqlvpa 181
                 +   +++fG l++a++g+++  ++  a    +  +l ++++
  CTQ27257.1 142 MMHGFYSFGTLFGAGVGMAVTGFGLpAAPHILAAALVAILP 182
                 88888999999999999888555443445555555555555 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00029
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGl 118
                 +li + f +G ++G +++g+++dr++R  +   +av+   g+ l+++ +   + +v  ++ +l Gig+ l
  CTQ27257.1 254 SLIYAGFTLGMTLGRFTGGWFIDRYSRVAVVRGSAVMGALGIGLIIFVD---NPWVAGISVLLWGIGASL 320
                 6788899******************************************...99*999999999999765 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.00048
                 HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  56 lvGaiiGslfagllgdrfGRkkslliaavlfvigavlq 93 
                 ++  ++G  ++g+lg+ fG +++++++  l++++a++ 
  CTQ27257.1 348 YLAFLVGPPLLGFLGEHFGLRSAMMVVLGLVMVAALVA 385
                 55667888899***************988888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2730.31
//
Query:       CTQ27258.1  [L=187]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-10   39.6   0.2    9.1e-10   38.2   0.1    1.8  2  TetR_N     Bacterial regulatory proteins, tetR family
    6.4e-08   32.8   0.4    1.3e-07   31.7   0.1    1.6  2  TetR_C_31  Tetracyclin repressor-like, C-terminal domain
     0.0011   19.2   4.3     0.0031   17.7   1.5    2.7  2  TetR_C_6   BetI-type transcriptional repressor, C-terminal
     0.0021   18.5   1.8     0.0025   18.2   0.7    1.7  2  TetR_C_28  Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
      0.029   13.9   0.1      0.045   13.3   0.1    1.4  1  ERAP1_C    ERAP1-like C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   2.5e-13   9.1e-10       1      47 []      14      60 ..      14      60 .. 0.98
   2 ?   -2.3   0.0       1.2   4.1e+03      17      33 ..     154     170 ..     151     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 2.5e-13
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                Il a++  +a +G++a+t r+IA  A+v  g+l +yF++ e+L+e++
  CTQ27258.1 14 ILQATLDTIAAHGIHAVTHRKIATCANVPLGSLTYYFSGIEALIEEA 60
                9*******************************************996 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
                 --HHHHHHHHTSSHHHH CS
      TetR_N  17 ttvreIAkrAGvskgal 33 
                 +t+  + +rA +sk+a+
  CTQ27258.1 154 MTLHFVTDRAPLSKAAI 170
                 55556778899999987 PP

>> TetR_C_31  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   4.2e+03      66      81 ..       7      22 ..       2      34 .. 0.63
   2 !   31.7   0.1   3.7e-11   1.3e-07       3     105 ..      82     178 ..      80     180 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
                -HHHHHHHHHHHHHHH CS
   TetR_C_31 66 dpeeaarllvaaldGl 81
                dp+++ r l a ld +
  CTQ27258.1  7 DPQRRERILQATLDTI 22
                5566666666666644 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 3.7e-11
                 CCHHHHHHHHHCCCCCT.THHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHHHHHHHHHHHHHHSGTS-H..HHHHH CS
   TetR_C_31   3 reeladlladlldrala.drertlAryelfleaarrPeLraalarlrralrealaallaalGlpdpeeaarllvaaldGllldrLagpaadp..raevr 98 
                 re++ d++adl+  a       +   y l+  ++ +P+L a+++ ++r+  + l++++a      p+ +ar l a+++G+ l+ +++   +p  +a++r
  CTQ27258.1  82 REQACDAIADLIFSAQVtTARNMELMYQLYAFCSSQPALKAVMQNWMRRSQQTLEQWFA------PD-TARGLDAFIEGMTLHFVTDR--APlsKAAIR 171
                 89999*******55433488888999********************************9......78.9******************9..555699999 PP

                 HHHHHHT CS
   TetR_C_31  99 ellrall 105
                  ++ +l+
  CTQ27258.1 172 MMVGQLA 178
                 9998876 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.58   2.1e+03      69      84 ..       5      20 ..       2      33 .. 0.58
   2 !   17.7   1.5   8.7e-07    0.0031       4     107 ..      85     175 ..      82     181 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.58
                TSTHHHHHHHHHHHHH CS
    TetR_C_6 69 dadaeaaAerlaAlid 84
                + d+++  + l+A +d
  CTQ27258.1  5 PNDPQRRERILQATLD 20
                4555555555555554 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 8.7e-07
                 HHHHHHHCCSTHSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSTHHHHHHHHHHHHHHHHHHHHHTCTTCHHHHH CS
    TetR_C_6   4 rlraileallpldqerraelavwlafwaeaardpelaelqrenyarlrsnlrallaelaegglradadaeaaAerlaAlidGLwlraalapeeldaera 102
                 + +ai + ++++  ++ + ++++ +++a   ++p+l+++++   +r +++l + +a   +          + A++l A+i+G++l+ +++  +l+++++
  CTQ27258.1  85 ACDAIADLIFSAQVTTARNMELMYQLYAFCSSQPALKAVMQNWMRRSQQTLEQWFA---P----------DTARGLDAFIEGMTLHFVTDRAPLSKAAI 170
                 56789999999999999999999999999999999999999888888888888877...4..........799**********************9999 PP

                 HHHHH CS
    TetR_C_6 103 ralvr 107
                 r +v 
  CTQ27258.1 171 RMMVG 175
                 98875 PP

>> TetR_C_28  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.6   5.6e+03      82      90 ..       9      17 ..       4      32 .. 0.55
   2 !   18.2   0.7   6.9e-07    0.0025      15      92 ..     102     178 ..      83     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.6
                HHHHHHHHH CS
   TetR_C_28 82 eeraaller 90
                + r+++l+ 
  CTQ27258.1  9 QRRERILQA 17
                444444433 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 6.9e-07
                 ..-HHHHHHHHHGGGSHHHHHHHHHHHHHHS--TTGG-HHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHHHHH CS
   TetR_C_28  15 eerallaallaalaedpellepwrewyrrwlerleadgldpvlatlvrlAadGlwlaellglppldpeeraallerLl 92 
                 ++ +l+  l a ++++p+l + +++w+rr ++ le+    p++a+ + + ++G+ l+ +++ +pl+++  + ++ +L 
  CTQ27258.1 102 RNMELMYQLYAFCSSQPALKAVMQNWMRRSQQTLEQW-FAPDTARGLDAFIEGMTLHFVTDRAPLSKAAIRMMVGQLA 178
                 34677888999999*********************55.456678888899**********************999996 PP

>> ERAP1_C  ERAP1-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.3e-05     0.045     205     285 ..      77     162 ..      33     169 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
                 HCC-S-HHHHHHHHHHCTT..T..S-GGGHHHHHHHH..HSTTHHHHHHHHHHHCHCCHHHHTSSTS..CHHHHHHHHHTT--SHH CS
     ERAP1_C 205 laatpdpellerllnfvle..sdevrnqdlrallagl.annpegrellwefvkenwdalakrwsgge..ildrivkgllpgftsee 285
                  + t+ +++  ++ +++++    + rn++l + l ++ +++p+   ++ +++++  ++l++++++ +   ld++++g++ +f ++ 
  CTQ27258.1  77 VGVTNREQACDAIADLIFSaqVTTARNMELMYQLYAFcSSQPALKAVMQNWMRRSQQTLEQWFAPDTarGLDAFIEGMTLHFVTDR 162
                 467777788888888888334556799999999****888888888888************9985333588*********999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1391.19
//
Query:       CTQ27259.1  [L=561]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-82  275.5  49.2    3.2e-42  144.2  25.0    2.1  2  Asp-Al_Ex  Predicted Permease Membrane Region
    2.7e-19   68.8   0.5      2e-08   34.0   0.3    2.5  2  TrkA_C     TrkA-C domain


Domain annotation for each model (and alignments):
>> Asp-Al_Ex  Predicted Permease Membrane Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5  16.2     4e-44   3.6e-40       2     165 ..      17     181 ..      16     183 .. 0.98
   2 !  144.2  25.0   3.5e-46   3.2e-42       1     166 [.     385     554 ..     385     555 .. 0.98

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 4e-44
   Asp-Al_Ex   2 lalvlalGlllGsikikvglsLGvaggvLivglllGqlgktgpivldisalsllrelgLllFlaavGlsaGpgffsslkkdGlklvllallvtvvplll 100
                 l++vlalGl+lG++++ ++++LG++ gvL+v+lllGq         ++ +++ + +lg++lF+++vG++aGp+ffs + +dG ++++lal+++  ++l+
  CTQ27259.1  17 LFVVLALGLCLGKLRL-GSVQLGNSIGVLVVSLLLGQQ--------HFAINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSAMLI 106
                 89**************.*********************........9**************************************************** PP

   Asp-Al_Ex 101 alvlaklvlkldlallaGllaGalTstpalgaandalaeldlpa...........vgyavtYplgvvllilvaqvl 165
                 a+vl+k v+++d++l+aG+laGa+Tstp+l  a d+l++ +lp+           +gya+tY +g+v li+ a ++
  CTQ27259.1 107 AMVLGK-VFGWDIGLTAGMLAGAMTSTPVLVGAGDTLRHFGLPSdqlaqsldhlsLGYALTYLVGLVSLIVGARYM 181
                 ******.***************************************************************988765 PP

  == domain 2  score: 144.2 bits;  conditional E-value: 3.5e-46
   Asp-Al_Ex   1 alalvlalGlllGsikik...vglsLGvaggvLivglllGqlgktgpiv..ldisalsllrelgLllFlaavGlsaGpgffsslkkdGlklvllallvt 94 
                 a+++++++Gl++G+i+++   +++ +G+a+g+L++g++lG+l++++p++  +++ al++++e+gL++F+a+vGlsaG+g+ ++l + G ++++ +l+v+
  CTQ27259.1 385 AFCAFFIVGLMIGMITFQfssFSFGIGNAAGLLFAGIMLGFLRANHPTFgyIPQGALNMVKEFGLMVFMAGVGLSAGAGINNGLGAVGGQMLAAGLIVS 483
                 58999**************9******************************************************************************* PP

   Asp-Al_Ex  95 vvplllalvlaklvlkldlallaGllaGalTstpalgaandalaeldlpavgyavtYplgvvllilvaqvla 166
                 +vp++++++++++vl+++ a+l+G+++Ga+T++pa+++++d+ a++++pa+gya tY++++vll+l++++++
  CTQ27259.1 484 LVPVVICFLFGAYVLRMNRAMLFGAMMGARTCAPAMEIISDT-ARSNIPALGYAGTYAIANVLLTLAGTLIV 554
                 ******************************************.*************************9986 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   7.2e-12   6.4e-08      11      64 ..     227     281 ..     223     286 .. 0.93
   2 !   34.0   0.3   2.2e-12     2e-08       3      69 ..     305     371 ..     303     372 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 7.2e-12
                 GGTTSBHHHHTHHHH.S-EEEEEE-T-EEES--TT-B--TT-EEEEEEEHHHHHH CS
      TrkA_C  11 plvGktlkelnlrar.gvlvvairRggeliipsgdtvLeeGDvllvvgspsdlae 64 
                 + +Gk l+el++ +  g+ + +irR+g l +p+gd vL+ GD + +vg p++ a+
  CTQ27259.1 227 WADGKNLRELGIYRQtGCYIERIRRNGILANPDGDAVLQMGDDIALVGYPDAHAR 281
                 578**********************************************998655 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 2.2e-12
                 EEEEE--GGGTTSBHHHHTHHHHS-EEEEEE-T-EEES--TT-B--TT-EEEEEEEHHHHHHHHHHH CS
      TrkA_C   3 evtvpagsplvGktlkelnlrargvlvvairRggeliipsgdtvLeeGDvllvvgspsdlaelrell 69 
                 e  v +++  vG++l++l+l ++g+++ ++ R++  +  +++ vL++GDvl v g+   ++++++++
  CTQ27259.1 305 EEIVVKNHNAVGRRLAQLKLTDHGCFLNRVIRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTVADRI 371
                 5556789**************************99999999*********************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3736.34
//
Query:       CTQ27260.1  [L=127]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-40  135.9  12.0    7.6e-40  135.7  12.0    1.0  1  YbjM           Putative inner membrane protein of Enterobacte
  ------ inclusion threshold ------
       0.11   12.4   9.0      0.034   14.0   2.0    2.1  2  DUF2721        Protein of unknown function (DUF2721)
       0.15   12.1   2.8       0.24   11.4   2.8    1.4  1  UCR_6-4kD      Ubiquinol-cytochrome C reductase complex, 6.4k
       0.25   11.5  10.7      0.092   12.9   1.2    2.1  2  DUF5518        Family of unknown function (DUF5518)
       0.56    9.5   4.7          1    8.7   4.7    1.5  1  Polysacc_synt  Polysaccharide biosynthesis protein
          3    7.7   5.1         11    5.9   0.2    2.1  2  Bap31          Bap31/Bap29 transmembrane region
        9.1    5.9  12.6        2.9    7.6   8.6    1.8  2  WTF            WTF protein


Domain annotation for each model (and alignments):
>> YbjM  Putative inner membrane protein of Enterobacteriaceae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7  12.0   2.9e-43   7.6e-40       2     114 ..       4     115 ..       3     118 .. 0.97

  Alignments for each domain:
  == domain 1  score: 135.7 bits;  conditional E-value: 2.9e-43
        YbjM   2 krrwagvvlcfllftlvflsqklevsgasaaeglrgelgLLlfllPGivaallskekrllvpllGallaapvcllvlklvlaseeslwqelayllSavF 100
                 +r+wag++++f+lf++v+ls  l+++ga++a g ++elgLL+fllPG+ a++ls+ +r+l+pllGa+laapvc++ ++l++++++++wqe+a++lSavF
  CTQ27260.1   4 ERSWAGIICGFVLFIVVCLSLLLHMKGAFRASG-NPELGLLFFLLPGAAASCLSPGRRVLRPLLGAILAAPVCMVTMRLFFVTHRTFWQEMAWVLSAVF 101
                 689******************************.***************************************************************** PP

        YbjM 101 WcalGallvlllri 114
                 WcalGal++l++ +
  CTQ27260.1 102 WCALGALCFLFICA 115
                 ***********965 PP

>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.7     0.037        94      69     104 ..      12      47 ..       4      56 .. 0.53
   2 ?   14.0   2.0   1.3e-05     0.034      69     125 ..      67     124 ..      59     127 .] 0.86

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.037
     DUF2721  69 llvlsallvvlvvlllflsallsldlsllaailfvl 104
                 ++ + +++v+l+ ll + +a+ +     l  ++f+l
  CTQ27260.1  12 CGFVLFIVVCLSLLLHMKGAFRASGNPELGLLFFLL 47 
                 222223333333333333555566667776666654 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.3e-05
     DUF2721  69 llvlsallvvlvvlllflsall.sldlsllaailfvlalllllvslllflrEirlslr 125
                  ++l+a ++++++ l f+++ +   +++++++++f +al +l+   ++  +++  s++
  CTQ27260.1  67 GAILAAPVCMVTMRLFFVTHRTfWQEMAWVLSAVFWCALGALCFLFICAWLDTWRSHS 124
                 57899999********9976666********************999999998877765 PP

>> UCR_6-4kD  Ubiquinol-cytochrome C reductase complex, 6.4kD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.8   9.3e-05      0.24       8      38 ..      86     116 ..      77     121 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT- CS
   UCR_6-4kD   8 pkyaelaknwvpsavawgavggvalvyltDW 38 
                 ++  ++ ++wv sav+w a g++  +++  W
  CTQ27260.1  86 HRTFWQEMAWVLSAVFWCALGALCFLFICAW 116
                 67778899****************9999988 PP

>> DUF5518  Family of unknown function (DUF5518)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.2   3.6e-05     0.092      48      95 ..       4      51 ..       2      59 .. 0.81
   2 ?    2.9   5.2     0.045   1.1e+02      28     102 ..      42     112 ..      39     118 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.6e-05
     DUF5518 48 dgavaGalaGligaipvlvlllvlllglvaaigglagfvallvalllv 95
                +  +aG+++G++ +i+v + ll+ + g++ a g++ + ++++++ +++
  CTQ27260.1  4 ERSWAGIICGFVLFIVVCLSLLLHMKGAFRASGNPELGLLFFLLPGAA 51
                678**************6666666668999999999998888776655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.045
     DUF5518  28 llgllvgGlvaGylaggdskdgavaGalaGligaipvlvlllvlllglvaaigglagfvallvalllvvllllvv 102
                 ll++l+ G+ a  l+ g++    + Ga+ ++ +  +++ l++v+      ++++    v+++v+  ++ +l +++
  CTQ27260.1  42 LLFFLLPGAAASCLSPGRRVLRPLLGAILAAPVCMVTMRLFFVTH----RTFWQEMAWVLSAVFWCALGALCFLF 112
                 566777777777777776666665555555555555544444444....44444444444433333332222222 PP

>> Polysacc_synt  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.7   0.00039         1      89     162 ..      41     117 ..       3     119 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00039
  Polysacc_synt  89 vllfllllliaa...flglpelavlylilalmllllvgvasfrrglfqglermkyaavsqvveqlsrvilvliavfl 162
                     llf+ll+  aa     g+  l+ l+ ++ ++ + +v++ +f++   + ++ m ++++ ++   l+ +++++i+ +l
     CTQ27260.1  41 GLLFFLLPGAAAsclSPGRRVLRPLLGAILAAPVCMVTMRLFFVTHRTFWQEMAWVLSAVFWCALGALCFLFICAWL 117
                    56777777777755555555666666666666668888888888888999************************997 PP

>> Bap31  Bap31/Bap29 transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.1      0.02        50     104     119 ..      11      26 ..      10      32 .. 0.85
   2 ?    5.9   0.2    0.0042        11      21      69 ..      69     119 ..      65     127 .] 0.74

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.02
       Bap31 104 lsGftLfLslvlrrlv 119
                 ++Gf+Lf+++ l+ l+
  CTQ27260.1  11 ICGFVLFIVVCLSLLL 26 
                 9*******99987665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0042
       Bap31  21 lLvlPlpsavrkklf..ksllvsklsaklqialkillifllllflDavrrv 69 
                 +L  P+   + + +f  + ++++ ++  l+ ++ + l+ l++lf+ a+   
  CTQ27260.1  69 ILAAPVCMVTMRLFFvtHRTFWQEMAWVLSAVFWCALGALCFLFICAWLDT 119
                 78888876555444411667899999999***************9876555 PP

>> WTF  WTF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.18   4.6e+02     170     208 ..       5      46 ..       1      55 [. 0.57
   2 ?    7.6   8.6    0.0011       2.9      98     140 ..      72     121 ..      56     126 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.18
         WTF 170 kklkvii..llllkvlifillgavk.sgdlnlnkalavllli 208
                 + +  ii  ++l+ v+++ ll  +k   +   n +l+ l+++
  CTQ27260.1   5 RSWAGIIcgFVLFIVVCLSLLLHMKgAFRASGNPELGLLFFL 46 
                 666666622344457777766655513345555666666665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0011
         WTF  98 a.vCvlklkdaif.......GkveyslvlgifcavcallfilltyfyetWt 140
                 a vC++++   +f         ++++l   ++ca  al f+++  + +tW 
  CTQ27260.1  72 ApVCMVTM-RLFFvthrtfwQEMAWVLSAVFWCALGALCFLFICAWLDTWR 121
                 34666666.333345555559999***9**********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 919.37
//
Query:       CTQ27261.1  [L=87]
Description: glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-16   60.1   0.1    2.2e-16   59.8   0.1    1.1  1  Glutaredoxin   Glutaredoxin
    3.4e-05   24.2   0.0    4.2e-05   23.9   0.0    1.2  1  DUF836         Glutaredoxin-like domain (DUF836)
    0.00011   22.2   0.1    0.00022   21.2   0.1    1.5  1  Thioredoxin_3  Thioredoxin domain
     0.0046   17.4   0.1     0.0099   16.3   0.1    1.5  1  Thioredoxin_2  Thioredoxin-like domain
  ------ inclusion threshold ------
       0.02   15.1   0.1        1.7    8.7   0.1    2.0  2  Thioredoxin_4  Thioredoxin
      0.061   13.6   0.3       0.66   10.3   0.3    2.1  1  zf-XS          XS zinc finger domain
      0.071   12.9   0.0      0.078   12.8   0.0    1.1  1  TraF           F plasmid transfer operon protein


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.1   8.4e-20   2.2e-16       2      60 .]       4      69 ..       3      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 8.4e-20
                  EEEESTSSHHHHHHHHHHHHTT.....GGEEEEEGCCSHHHHHHHHHHH..TSSSSSEEEETTEEE CS
  Glutaredoxin  2 vlftkptCpyCkkakrlLkelg.....vkfeeidvdkdeeireelkels..gvrtvPqvfidgkhv 60
                  v+f++p+CpyC++ak+l+++l      ++++++d+ ++   +++l++ +  +v+tvPq+f+d+kh+
    CTQ27261.1  4 VIFGRPGCPYCVRAKELAEKLTnerddFNYRYVDIHAEGISKADLEKTVgkPVETVPQIFVDQKHI 69
                  8*****************88887777788****************9999999*************8 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.6e-08   4.2e-05       3      57 ..       4      66 ..       3      80 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.6e-08
                EEEE-TT-HHHHHHHHHHHH.HCCCTTEEEEEEETT....T-CCCHC...CCCTTTTEEEECT CS
      DUF836  3 tLyskpgChlCeqakekLke.lkleegleleviDIa....kdeelea...kYgleipvlaleg 57
                +++++pgC+ C +ake+ ++  +++++++   +DI     ++ +le+   k  +++p++++++
  CTQ27261.1  4 VIFGRPGCPYCVRAKELAEKlTNERDDFNYRYVDIHaegiSKADLEKtvgKPVETVPQIFVDQ 66
                68************9999995567777********9766655556665566677888888876 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   8.7e-08   0.00022       7      58 ..       8      67 ..       2      72 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 8.7e-08
                   SSSSTTCHHHHHHHHHHCHCC.TCEC.......EEECCTTHHHHHHCT-SSSSEEECTTC CS
  Thioredoxin_3  7 gpgCakCpklekavkeaaaek.gika.......evekvtdfeeiekygVmsvPalvidgk 58
                    pgC++C +++++++++ +e+ ++++       e +   d+e+     V++vP++++d k
     CTQ27261.1  8 RPGCPYCVRAKELAEKLTNERdDFNYryvdihaEGISKADLEKTVGKPVETVPQIFVDQK 67
                   689*****************9559998887766666778899999999*********977 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   3.9e-06    0.0099      10     103 ..       4      76 ..       2      81 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.9e-06
  Thioredoxin_2  10 vvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgkeivarlpGyvpae 103
                    v+f  p+CpyC + k+  ++l   t        +++f+  +v+i  +   k       +  e     +v+ +P+i++ ++      + G +++e
     CTQ27261.1   4 VIFGRPGCPYCVRAKELAEKL---TNE------RDDFNYRYVDIHAEGISK-------ADLEKTVGKPVETVPQIFVDQKH-----IGGCTDFE 76 
                    89***********88877777...222......455555555555555554.......22222333357777776655544.....56666555 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00068       1.7      18      53 ..       4      36 ..       1      51 [. 0.79
   2 ?    5.2   0.0    0.0084        21     131     162 ..      49      80 ..      39      81 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00068
                   EEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEE CS
  Thioredoxin_4 18 ieyedlrCphCakfeeeveklleeyidtGkvkfiir 53
                   +++    Cp+C + +e  ekl +e    ++  +++ 
     CTQ27261.1  4 VIFGRPGCPYCVRAKELAEKLTNER---DDFNYRYV 36
                   7899999**************9996...55555554 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0084
                    HHHHHHT--SS-EEEETTEEE-TT--HHHHHH CS
  Thioredoxin_4 131 keakkagiestPtfiingekveepqtyeelka 162
                    ++   + +e++P ++++++ + +  ++e++ +
     CTQ27261.1  49 EKTVGKPVETVPQIFVDQKHIGGCTDFEAWAK 80 
                    455556799************99999999875 PP

>> zf-XS  XS zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   0.00026      0.66       1      28 [.      11      47 ..      11      56 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00026
       zf-XS  1 CPfCknkkkqd...........YklkdLlqHAsGvGass 28
                CP+C   k              Y++ d   HA+G++++ 
  CTQ27261.1 11 CPYCVRAKELAekltnerddfnYRYVD--IHAEGISKAD 47
                999998886433444455674455555..59****9886 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.1e-05     0.078     134     198 ..       4      64 ..       1      71 [. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.1e-05
        TraF 134 lfFyrgkcpyceaqapilqafadky.glevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvl 198
                 ++F r++cpyc  + +  ++++++   +  r+V++  + + +      d ++     v+++P++++
  CTQ27261.1   4 VIFGRPGCPYCVRAKELAEKLTNERdDFNYRYVDIHAEGISK-----ADLEKTVGKPVETVPQIFV 64 
                 5799*****************987659**********99954.....3444444555677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 630.75
//
Query:       CTQ27262.1  [L=95]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-31  107.6   1.5    2.3e-31  107.5   1.5    1.0  1  DUF1418       Protein of unknown function (DUF1418)
  ------ inclusion threshold ------
       0.45   10.3   0.1       0.45   10.3   0.1    2.2  2  Sensor_TM1    Sensor N-terminal transmembrane domain
        3.3    7.2   4.9        3.8    7.0   4.9    1.0  1  E1-E2_ATPase  E1-E2 ATPase


Domain annotation for each model (and alignments):
>> DUF1418  Protein of unknown function (DUF1418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   1.5   3.8e-35   2.3e-31       1      93 [.       1      92 [.       1      95 [] 0.90

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 3.8e-35
     DUF1418  1 mrslgklPrsvlilevlGliLLvlayLsvndylsLPgplsskeaaivmiflGvllllPaavalvwrvaqalapllrkrsPdkksrskrekkdk 93
                mr ++ lP+s+l++e+lG+ LL la+Ls+n+y++LP+p++s++aa+vm+f+G++l++Paa++++wr+aq +ap+l+++ P+ +s s+rek+++
  CTQ27262.1  1 MRKFAPLPKSILLVEILGMGLLTLAWLSLNQYVQLPAPIASPTAALVMLFAGIVLMIPAALVVMWRMAQIVAPQLTHS-PKPESLSDREKRND 92
                99*************************************************************************765.44445666666554 PP

>> Sensor_TM1  Sensor N-terminal transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   7.6e-05      0.45       8      37 ..       3      32 ..       1      34 [. 0.93
   2 ?    0.9   0.7     0.063   3.8e+02      22      33 ..      44      55 ..      39      60 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.6e-05
  Sensor_TM1  8 nfSsLtrkIillnLlaLvvLvaGiLYlnqf 37
                +f +L + I+l+ +l++  L    L lnq+
  CTQ27262.1  3 KFAPLPKSILLVEILGMGLLTLAWLSLNQY 32
                6899************************97 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.063
  Sensor_TM1 22 laLvvLvaGiLY 33
                +aLv+L+aGi+ 
  CTQ27262.1 44 AALVMLFAGIVL 55
                699******975 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.9   0.00063       3.8     122     174 ..      11      72 ..       2      76 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00063
                   HHHHHHHHHHHHHHS-STTTSSTT.........HHHHHHHHHHHHHS-TTHHHHHHHHHHHH CS
  E1-E2_ATPase 122 lvpvvlliallvflialllgksla.........eallralallvaaiPcaLplavplalalg 174
                   + +v +l + l+ l++l+l++ ++          al+  +a +v +iP aL+++  +a +++
    CTQ27262.1  11 ILLVEILGMGLLTLAWLSLNQYVQlpapiasptAALVMLFAGIVLMIPAALVVMWRMAQIVA 72 
                   5666677778888888888888888889999988888899**************99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 721.01
//
Query:       CTQ27263.1  [L=240]
Description: nitroreductase A, NADPH-dependent, FMN-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-19   70.6   0.9    1.2e-18   67.7   0.9    2.0  1  Nitroreductase  Nitroreductase family
  ------ inclusion threshold ------
      0.096   12.4   0.0       0.23   11.2   0.0    1.6  1  DUF3665         Branched-chain amino acid aminotransferase


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.9   1.4e-22   1.2e-18       2     170 .]       9     159 ..       8     159 .. 0.88

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 1.4e-22
                     HH--B---B-S----HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEEEE CS
  Nitroreductase   2 rkRrSiRkFddepvpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvlivi 96 
                     r+ rSiR+F+d pv++e+ ++i++ a+ a +++ lq + ++ ++d +lr++l ++  +++ +a+a+++ ++        +  + +l  +p   + 
      CTQ27263.1   9 RSHRSIRHFTDAPVSDEQRAEIIASAQAASTSSFLQCTSIIRITDPALRERLVPLTGGQQHVAQAAEFWVFC-------ADFNRHLQICPQAQLG 96 
                     889***********************************************************9888876665.......5566666666666655 PP

                     ---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE- CS
  Nitroreductase  97 vatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavGy 170
                                 +++    ++d+++ aqn l+aA++lGlg ++igg+ +  e v++ll+lp++  ++  +++G+
      CTQ27263.1  97 -----------LAEQLLIGVVDTALLAQNALTAAESLGLGGVYIGGLRNSIEAVTELLELPQHVLPLFGLCLGW 159
                     ...........68899999*****************************88888********5445557777776 PP

>> DUF3665  Branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.6e-05      0.23       8      22 .]      18      32 ..      18      32 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.6e-05
     DUF3665  8 TenPTSPErLaEILA 22
                T++P S+E +aEI A
  CTQ27263.1 18 TDAPVSDEQRAEIIA 32
                9************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1928.57
//
Query:       CTQ27264.1  [L=300]
Description: ribosomal protein S6 modification protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-78  260.7   0.0    7.8e-78  260.4   0.0    1.1  1  RimK             RimK-like ATP-grasp domain
    1.7e-39  134.1   0.0    3.5e-39  133.1   0.0    1.5  1  Rimk_N           RimK PreATP-grasp domain
    2.4e-17   62.9   0.2    3.5e-17   62.4   0.2    1.2  1  GSH-S_ATP        Prokaryotic glutathione synthetase, ATP-gras
    3.6e-10   40.1   0.0    5.3e-10   39.6   0.0    1.2  1  ATP-grasp_3      ATP-grasp domain
    2.5e-09   36.8   0.1     0.0053   16.0   0.0    3.1  2  ATPgrasp_ST      Sugar-transfer associated ATP-grasp
    8.1e-07   28.8   0.1    1.7e-06   27.7   0.1    1.5  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
  ------ inclusion threshold ------
      0.011   15.0   0.0       0.08   12.2   0.0    2.2  1  ATPgrasp_YheCD   YheC/D like ATP-grasp
      0.028   14.8   0.0      0.077   13.4   0.0    1.7  1  Arm-DNA-bind_3   Arm DNA-binding domain
      0.044   13.5   0.1      0.073   12.8   0.1    1.3  1  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
      0.049   13.4   0.0       0.14   12.0   0.0    1.7  1  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T


Domain annotation for each model (and alignments):
>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.4   0.0   4.3e-81   7.8e-78       1     188 []      97     286 ..      97     286 .. 0.99

  Alignments for each domain:
  == domain 1  score: 260.4 bits;  conditional E-value: 4.3e-81
                 HH-HHHHHHHHHHTT-----EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH...GGG--EEEEE--SS-SEEEEEEEET CS
        RimK   1 ardKlkslklLakakikvpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlea...lkeailvqeyieeaenediRvlvvd 96 
                 ardKl+sl+lLa+++i++p t +a++++d+++li +++ ++P+vvK veg+qGi+vvla+++q++++v++a   l+++ilvqeyi+ea+++diR+lvv+
  CTQ27264.1  97 ARDKLRSLQLLARQGIDLPLTGIAHSPDDTSDLIAMVG-GAPLVVKLVEGTQGIGVVLAETRQAAESVIDAfrgLNAHILVQEYIAEAKGCDIRCLVVG 194
                 79***********************************9.************************************************************ PP

                 TEEEEEEEEE--SSS----TTTT-EEEE----HHHHHHHHHHHHHCT-SEEEEEEEEETTEEEEEEEESS--SHHHHHHHT--HHHHHHHHH CS
        RimK  97 devvaalrrvskeGdFRsnlhrGgvaeklqlseeekelAikaakamelvvaGvDllrakrgllvlEvnsspglekiektlgidiakklieai 188
                 +evvaa++r++keGdFRsnlhrGg+a ++q+s+ee+ +Aika+++++l+ aGvD+lra rg+lv+Evn+spgle++e t+g+d+a k+i++i
  CTQ27264.1 195 NEVVAAIERRAKEGDFRSNLHRGGMATVAQISDEERAIAIKATQTLGLDAAGVDILRAARGPLVMEVNASPGLEGVETTTGVDVAGKMIAWI 286
                 ******************************************************************************************98 PP

>> Rimk_N  RimK PreATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1   0.0   1.9e-42   3.5e-39       1      94 []       1      94 [.       1      94 [. 1.00

  Alignments for each domain:
  == domain 1  score: 133.1 bits;  conditional E-value: 1.9e-42
      Rimk_N  1 mkiaiLsrnpelystrrLveaaekrghevevldplrcylkieaekpevyykgekleefdavipRigasitfygtavlrqFemmgvfvlneseAi 94
                mkiaiLsr+ +lys+rrL eaa++rgh++e+ldpl+cy++++  + +++ykg++l++fdavipRig+ it+ygta lrqFe +g + lnes Ai
  CTQ27264.1  1 MKIAILSRDGTLYSCRRLREAAQQRGHQIEILDPLSCYMNVSPVASSIHYKGRQLPHFDAVIPRIGSAITYYGTAALRQFELLGSYPLNESVAI 94
                9********************************************************************************************9 PP

>> GSH-S_ATP  Prokaryotic glutathione synthetase, ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.2   1.9e-20   3.5e-17      16     160 ..     118     262 ..     106     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 1.9e-20
                 EEES-HHHHHHHHHHHSS..EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SEEEEEE--SS-S--- CS
   GSH-S_ATP  16 lvskdkeeirafleeqgd..vilKPldgkgGegvfrvkksdpnlksilellteegkepviaqrylpeikeGDkRillvdGepigyalaRvpaegevRsn 112
                  ++++ ++ +++++  g   +++K ++g+ G gv+  ++ ++  +s+++++   +  ++++q+y+ e+k  D R l+v  e +  a++R ++eg++Rsn
  CTQ27264.1 118 GIAHSPDDTSDLIAMVGGapLVVKLVEGTQGIGVVLAET-RQAAESVIDAFRGLNA-HILVQEYIAEAKGCDIRCLVVGNEVVA-AIERRAKEGDFRSN 213
                 5555555566666555544589************97766.77889999*9988766.89*******************999998.************** PP

                 GGGTSCEEEEE--HHHHHHHHHHHHHHHHTT--EEEEEEE....TTEEEEEE CS
   GSH-S_ATP 113 laaggraeatelterdreiaeelapkLkekGllfvGlDvi....gdkltEin 160
                 l+ gg a+  ++++++r ia + +++L   Gl  +G+D++    g  ++E+n
  CTQ27264.1 214 LHRGGMATVAQISDEERAIAIKATQTL---GLDAAGVDILraarGPLVMEVN 262
                 ********************9999887...8999999998333334567777 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0     3e-13   5.3e-10       1     156 [.      97     263 ..      97     266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 3e-13
                  HTSHHHHHHHHTTT.S---............-EESS--SSSEEEEESS-------B--SS--TTE.............EEEE--.-SEEEEEEEEE.S CS
  ATP-grasp_3   1 asdKlktykkLkeagvkvP........tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve......lvqefi.eGkplSvsllsdg 83 
                  a dKl++ + L ++g+ +P        + +++  + +   +lvvK ++G  g +v+++e +++ae+ i+         lvqe+i e k + + +l+ g
   CTQ27264.1  97 ARDKLRSLQLLARQGIDLPltgiahspDDTSDLIAMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRglnahiLVQEYIaEAKGCDIRCLVVG 194
                  579****************9999888888888888888*****************************999889999*9******7789999**99977 PP

                  SSEEEEEEEEEEEET....TEEEEEEES----HHHHHHHHHHHHHTTSTT--EEEEEEEEESS.SEEEEEEES CS
  ATP-grasp_3  84 ekvlvlavnrqliekaekefvyaGnvtpietelkeevvelaeevvekleglaGyvGvDlvlkdeepyviEvNP 156
                  ++v v a+ r   e   +++  +G+++ +  + ++e +++a ++++ l gl   +GvD++ +  +p v+EvN+
   CTQ27264.1 195 NEV-VAAIERRAKEGDFRSNLHRGGMATVA-QISDEERAIAIKATQTL-GLD-AAGVDILRAARGPLVMEVNA 263
                  444.44566666655566688999998888.55666788999******.876.68*****************7 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.8e-06    0.0086      10      96 ..      88     163 ..      83     229 .. 0.73
   2 !   16.0   0.0   2.9e-06    0.0053     231     276 ..     232     275 ..     224     284 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.8e-06
  ATPgrasp_ST  10 yNpraefplvddKlkfkelalraglkvpkllgvikeqaeiseleafvkeleegvviKpakgsgGkGilviteredqdylkssgksal 96 
                  +N+  ++    dKl   +l+ r+g+++p   g+ +  ++ s+l a+v +  + +v+K ++g  G G++ +  r+         ++ +
   CTQ27264.1  88 LNESVAITRARDKLRSLQLLARQGIDLPL-TGIAHSPDDTSDLIAMVGGA-P-LVVKLVEGTQGIGVVLAETRQA--------AESV 163
                  56777777789*****************8.8899999*************.7.9*************99865333........3333 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 2.9e-06
  ATPgrasp_ST 231 laakaaeklpglgylGwDivldeekgplllElNarpglaivqiang 276
                  +a ka + ++gl + G+Di   + +gpl++E+Na pgl+ v+   g
   CTQ27264.1 232 IAIKATQ-TLGLDAAGVDIL-RAARGPLVMEVNASPGLEGVETTTG 275
                  7889999.9*********95.66666************99877555 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.1   9.6e-10   1.7e-06      27     178 ..     126     267 ..     112     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 9.6e-10
                      HHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--...ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHHH CS
  Dala_Dala_lig_C  27 llekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeai...egreievavlgneklevsevgeivvkkgfydyeaky 117
                      + + +    g p++VK ++    +Gv  +e+++  ++ i++    ++++lv e+i   +g++i + v+g   +ev  ++e+++k+g  d+    
       CTQ27264.1 126 TSDLIAMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIaeaKGCDIRCLVVG---NEVVAAIERRAKEG--DFRSNL 214
                      55556666789*******************************************9876789********...55666666666666..455555 PP

                      C.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS--- CS
  Dala_Dala_lig_C 118 sddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlPGf 178
                        ++  +   a++++e+    +++a+ka ++l+l + a vD++  + g +++ EvN  PG+
       CTQ27264.1 215 --HRGGMATVAQISDEE----RAIAIKATQTLGL-DAAGVDILRAARG-PLVMEVNASPGL 267
                      ..567788889999887....579********98.6788**9888666.6678*******7 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.5e-05      0.08      93     165 ..     158     222 ..      95     245 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.5e-05
  ATPgrasp_YheCD  93 selesllkkllkkkr.ylvQqgidlatidgrpfDfRvlvqKngkgkWevtgiaaRiagkgsittnlsrGGtalp 165
                     ++ es+++ + + ++ +lvQ++i  a+     +D+R lv  n     ev++++ R a++g++ +nl+rGG a  
      CTQ27264.1 158 QAAESVIDAFRGLNAhILVQEYIAEAK----GCDIRCLVVGN-----EVVAAIERRAKEGDFRSNLHRGGMATV 222
                     556666666665555589999997555....79******966.....599999*****************8854 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.3e-05     0.077      32      66 ..      70     113 ..      49     117 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.3e-05
  Arm-DNA-bind_3  32 tfv.....lryr.lGryp...avslaeARkkarelraliaqGiD 66 
                     t++     ++++ lG+yp   +v +  AR+k r l+ l++qGiD
      CTQ27264.1  70 TYYgtaalRQFElLGSYPlneSVAITRARDKLRSLQLLARQGID 113
                     44444443333445***95555899******************* PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   4.1e-05     0.073       8     136 ..     105     226 ..      99     240 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-05
                 HHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE--.-SEEEEEEEEECTTEE CS
      GARS_A   8 dllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEell.eGeEvsllalvdgktv 105
                 +ll++ gi  +     ++p++ ++ i  ++   lVvK +  + g gv++a++++ a   v + ++    G  ++++++ e++ e +   + +lv g++v
  CTQ27264.1 105 QLLARQGIDLPLTGIAHSPDDTSDLIAMVGGAPLVVKLVEGTQGIGVVLAETRQAAE-SVIDAFR----G-LNAHILVQEYIaEAKGCDIRCLVVGNEV 197
                 7888999999999999999999999999999999*****99******9988776554.4445555....5.5667777776637788999*******99 PP

                 EE---BEEEEEEECCC..EEEEECECEEEES-T CS
      GARS_A 106 kplplaqdhkrvlegD..kgpnTGGmGayspap 136
                 ++       +r+ egD  +++  GGm ++++++
  CTQ27264.1 198 VAAIE----RRAKEGDfrSNLHRGGMATVAQIS 226
                 86554....78999994346678***9998764 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.5e-05      0.14       5     105 ..     174     283 ..     171     294 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.5e-05
  ATPgrasp_Ter   5 llvmeyLeg.pEySvDvlaekgevlaavpRrKekgglq............elekdeelielaerlaeefgldglvnvQvrededgpkLLEiNpRasG 88 
                   +lv+ey++  + + + +l   +ev+aa+ Rr ++g+ +            ++  ++e   +a + ++++gld   +v + + + gp ++E+N+  s 
    CTQ27264.1 174 ILVQEYIAEaKGCDIRCLVVGNEVVAAIERRAKEGDFRsnlhrggmatvaQI--SDEERAIAIKATQTLGLDA-AGVDILRAARGPLVMEVNA--SP 265
                   7899998651568899*************99775666655556666653333..3444456788899999986.689999999999*****96..44 PP

  ATPgrasp_Ter  89 Gl.gysalaGvnlpylal 105
                   Gl g+ + +Gv+++  ++
    CTQ27264.1 266 GLeGVETTTGVDVAGKMI 283
                   441466667777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2586.92
//
Query:       CTQ27265.1  [L=159]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-16   59.5   0.0    4.3e-16   59.1   0.0    1.1  1  YbjN      Putative bacterial sensory transduction regulator


Domain annotation for each model (and alignments):
>> YbjN  Putative bacterial sensory transduction regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   2.4e-20   4.3e-16       2     122 ..       9     131 ..       8     134 .. 0.98

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 2.4e-20
                 HHHHHHHHHHH--S-EEEEETTEE.EEEEEETTEEEEEEE--SSTT-EEEEEEEEES--TTHHHHHHHHHHHTTTTTTT-EEEEETTEEE....EEEEE CS
        YbjN   2 ldlleevLeeagleyertedddgaivvvgtwggyrftiallgeseelllvlafvarvpeedreallellnrwNrellfgkayldedgdvl....vehdl 96 
                 ld+l+ +L+e g+ + ++++++    +  ++++++ +++   +  ++  +++  a+v +++  al + l  +N+++l++ka++d ++d l    v+++l
  CTQ27265.1   9 LDTLRRWLDEIGISFFECDSCQAL--HLPHMQNFDGIFDAKIDLVDNVVLFSALAEVKPSALLALSADLSAINASSLTVKAFIDIQDDNLpklvVCQSL 105
                 799*********************..************************************************************************* PP

                 E-.TT--HHHHHHHHHHHHHHHHHHH CS
        YbjN  97 dldagltpeqldrllalvleaadqff 122
                 + + g+t+eq+  +++++ e++++++
  CTQ27265.1 106 SIGPGVTMEQFAWFFRQSEEQISMVI 131
                 ********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1345.54
//
Query:       CTQ27266.1  [L=370]
Description: putrescine transporter subunit: periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-34  120.2   3.5    1.7e-34  119.9   3.5    1.1  1  SBP_bac_8      Bacterial extracellular solute-binding protein
    2.7e-25   89.2   1.7    2.7e-25   89.2   1.7    1.6  2  SBP_bac_6      Bacterial extracellular solute-binding protein
    1.5e-17   64.5   8.4    2.2e-17   64.0   8.4    1.2  1  SBP_bac_1      Bacterial extracellular solute-binding protein
      2e-08   34.3   0.0    8.1e-08   32.3   0.0    2.0  1  SBP_bac_11     Bacterial extracellular solute-binding protein
    0.00014   20.8   0.2        0.2   10.3   0.0    2.3  2  Lipoprotein_8  Hypothetical lipoprotein (MG045 family)


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.9   3.5   4.7e-38   1.7e-34       3     280 ..      46     335 ..      44     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: 119.9 bits;  conditional E-value: 4.7e-38
                 HHHHHHH-TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GG..GSTTHHH-HH.HHHTT...--TS..----EEEEEEE CS
   SBP_bac_8   3 akefekktgvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladls..dldnlddltd.alaav...gydgk.lygvPyasetp 94 
                 ++ fek+tg+kv +  ++sn++   l  +l ag++  +d+v++++++l +  ++g++++l+  +l+n+++l++ +l+ v   +   +  y++Py + t 
  CTQ27266.1  46 VANFEKETGIKVVYDVFDSNEV---LEGKLMAGST-GFDLVVPSASFLERQLAAGVFQPLDksKLPNWKNLDPeVLKLVakhDP--EnKYAMPYLWAT- 137
                 889***********99988775...9999999**8.6*********************9998899*****97766666664444..347********8. PP

                 -EEEEEHHHHHH.....S.---BHHHHHHH..HHHHHHH-.SEGG---GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE-S..--SSTT CS
   SBP_bac_8  95 yvliynkdllek.....aedpktwdellaa..akklkgkf.glpdpasgwlqaallakdgksldddggkdglkealellkklkdngktydtgadavsef 185
                 +++ yn d++++     a ++++wd +l+   ++klk +   + d ++  + + l + +gk+++  + +d +  a +ll kl++n+ ++  ++++++++
  CTQ27266.1 138 TGIGYNVDKVKAvlgkdA-PVDSWDLVLKPenLEKLKSCGvSFLDAPEEIFATVLNY-LGKDPNSSKADDYTGPATDLLLKLRPNIRYF-HSSQYINDL 233
                 8*********96555556.********9822244445333477889999********.*****8877666678888**********988.568****** PP

                 TTTSBSEEEE-TTHHHHHH......-TTTSEEEE--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S-TTT..HHHHHH CS
   SBP_bac_8 186 anGevaftingswdiaaaq......kagkklgaivpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnksaal..spevkk 276
                 anG++  +i++ +d+ +a+      k+g ++ + +pk+g++a ++ +a+p++akn+d+ A +Fl++l+ p+  a+ +++  y + nk+++   s+++ +
  CTQ27266.1 234 ANGDICVAIGWAGDVWQAAnrakeaKNGVNVSYFIPKEGALAFFDVFAMPADAKNKDE-AYQFLNYLMRPDVIAKISDQVFYANGNKASTPlvSETIRN 331
                 **********9955444444557777777****************************7.*****************************99778999999 PP

                 -HHH CS
   SBP_bac_8 277 dpal 280
                 +pa+
  CTQ27266.1 332 NPAI 335
                 9886 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.38   1.4e+03     117     160 ..       2      45 ..       1      60 [. 0.63
   2 !   89.2   1.7   7.4e-29   2.7e-25       5     217 ..      80     315 ..      76     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.38
   SBP_bac_6 117 kkllrnlkanlhpaq.mvkaagslesgepavsvvpyffadilpek 160
                 +++++++  +l   + m  +agsl++++  +  v +++  i+p  
  CTQ27266.1   2 TAFGKKWLTGLVTGAlMAVSAGSLAAEQ-KTLHVYNWSDYIAPDT 45 
                 5677888888777778888899998887.4444455555555444 PP

  == domain 2  score: 89.2 bits;  conditional E-value: 7.4e-29
   SBP_bac_6   5 dlilsfdkdflekfieeglfqpld...panlpnvnkdfa..eeglkdpdgkyypygvgplvlavnkdrlk...grpvP.ksWaDLldPeykgkvalpgn 94 
                 dl++  + +fle+  ++g+fqpld    +n++n+++++    +++   +++ +py + ++++ +n d++k   g+++P  sW+  l+Pe  +k   +g 
  CTQ27266.1  80 DLVV-PSASFLERQLAAGVFQPLDkskLPNWKNLDPEVLklVAKHDPENKYAMPYLWATTGIGYNVDKVKavlGKDAPvDSWDLVLKPENLEKLKSCGV 177
                 8999.9******************66633444444444344444444477777***************983334666*999*999***98888888887 PP

   SBP_bac_6  95 ng....sdlfealllalyk.......dfgedgvkkllrnlkanlhpaqmvkaagslesgepavsvvpyffadilpekkkgk......nlkvvwPedGal 176
                 +        f+++l +l k       d +  ++++ll +l+ n +   + ++++ l+ g+  + v++ +++d++++ ++ k      n+   +P++Gal
  CTQ27266.1 178 SFldapEEIFATVLNYLGKdpnsskaDDYTGPATDLLLKLRPNIRYFHSSQYINDLANGD--ICVAIGWAGDVWQAANRAKeakngvNVSYFIPKEGAL 274
                 7776667888888888888******8788*******************************..**************9999999**************** PP

   SBP_bac_6 177 vspifmlvkkg.kkkelakafidfllspevqailakaggvfP 217
                 ++ ++ +++++ k+k++a++f+++l+ p+v a ++++ + + 
  CTQ27266.1 275 AFFDVFAMPADaKNKDEAYQFLNYLMRPDVIAKISDQVF-YA 315
                 ************************************997.43 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   8.4   6.1e-21   2.2e-17      17     312 ..      44     303 ..      33     306 .. 0.77

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 6.1e-21
                 H....HHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE.EE.... CS
   SBP_bac_1  17 a....fekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds.kv.... 106
                 +    fek ++gikV+++  +s+++ +     ++aG+   D++  + +++ r   ag+++pld+   +++++ +++            +l   +     
  CTQ27266.1  44 DtvanFEK-ETGIKVVYDVFDSNEVLE---GKLMAGSTGFDLVVPSASFLERQLAAGVFQPLDKSKLPNWKNLDPE------------VLKLvAKhdpe 126
                 33445***.8*****************...6666666555*****888888767779*******999998777664............33322334677 PP

                 .ES.EEEE.EEEEEEEETTTHH.....CTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHH CS
   SBP_bac_1 107 .ly.vPly.aargliYNkdlfe.....kagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaa 197
                   y +P+  a++g+ YN d+++     +a++d   +Wd ++++    k k      g+ + +a  + +++ l++++  +           ++ ++ + +
  CTQ27266.1 127 nKYaMPYLwATTGIGYNVDKVKavlgkDAPVD---SWDLVLKPENLEKLKS----CGVSFLDAPEEIFATVLNYLGKDP-----------NSSKADDYT 207
                 899*****66*****************99999...8885544333333333....344667777777777777777777...........666666655 PP

                 HHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCS CS
   SBP_bac_1 198 tylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgsk 296
                 + +++l         +  ++   + ++++ +++++G++ +ai + ++        +++a  a+  k++ ++ ++++  g  +       + +a+p+++k
  CTQ27266.1 208 GPATDLL-------LKLRPNIRYFHSSQYINDLANGDICVAIGWAGD-------VWQAANRAKEAKNGVNVSYFIPKEGALA-----FFDVFAMPADAK 287
                 5555555.......78889**************************99.......6788888888888888888885555444.....44669******* PP

                 THHHHHHHHHHHTSHH CS
   SBP_bac_1 297 npeaAkkFldfllspe 312
                 n+++A +Fl++l  p+
  CTQ27266.1 288 NKDEAYQFLNYLMRPD 303
                 ************8775 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.3e-11   8.1e-08      15     225 ..      44     309 ..      32     313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2.3e-11
                 HHHHHHHHHH---EEEEESSHHHHHH.HHHHH...-SEEEESSH.HHHHHHHHGGGGG...........................GG-EEEEEEEEEEE CS
  SBP_bac_11  15 elaaaFeahtgvkvevsaggsgklar.qiadga.rpDvwipassawlellaaaglvqa...........................esavplassplvia 84 
                 + +a+Fe++tg+kv++   +s+++++ ++ +g+  +D+++p  s  le+  aag+ q+                           + a p+  ++  i 
  CTQ27266.1  44 DTVANFEKETGIKVVYDVFDSNEVLEgKLMAGStGFDLVVPSAS-FLERQLAAGVFQPldksklpnwknldpevlklvakhdpenKYAMPYLWATTGIG 141
                 5689**********************96766666********86.788888999999999999988888888888888887777766666666666666 PP

                 ESTT-.......TT---SHHHHHHS....S-.-EEEE--T-TTTTHH.HHHHGGG--..............HHHHHHHHHTEEEEESSHHHHHHHHHTT CS
  SBP_bac_11  85 vpkgn.......pkkikgwadLlkp....gl.klavadPttspsGlaalalleaaga..............qellkalekkvvklgessrqlltaveag 157
                 ++ ++        +++++w+ +lkp    +l + +v+    ++      ++l+ +g+               +ll +l+ +++ +   s+q ++++++g
  CTQ27266.1 142 YNVDKvkavlgkDAPVDSWDLVLKPenleKLkSCGVSF--LDAPEEIFATVLNYLGKdpnsskaddytgpaTDLLLKLRPNIRYF--HSSQYINDLANG 236
                 66666666665557999*******97666553366663..577777777777766666667777778888999*********966..469********* PP

                 T-SEEEEEHHHH.......H..HSTTSSEEEE--TTT--...EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHH CS
  SBP_bac_11 158 eadagivyesea.......kaaengdkleavylpeglnldpldypaavlkkaakreaAraFlafLrspeaqailr 225
                 ++ ++i++  ++       k a+ng +++++ ++eg ++     ++a++++a+++ +A  Fl++L  p++ a + 
  CTQ27266.1 237 DICVAIGWAGDVwqaanraKEAKNGVNVSYFIPKEGALA--FFDVFAMPADAKNKDEAYQFLNYLMRPDVIAKIS 309
                 ********7766665554466688889999999999886..4445899********************9988766 PP

>> Lipoprotein_8  Hypothetical lipoprotein (MG045 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   5.7e-05       0.2      16      98 ..      20     106 ..       5     154 .. 0.79
   2 !    8.6   0.1   0.00019      0.68     251     333 ..     225     299 ..     191     319 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.7e-05
  Lipoprotein_8  16 lisiltacsksklvlanfesyvdP..lllerakrkrklsfltydnneklislikaki..sdvavasayevaelakngllkkidWakf 98 
                    ++++  a  +++l + n+  y+ P  +++ + +   k+ + ++d+ne+l   + a    +d+ v sa  + +    g ++++d +k+
     CTQ27266.1  20 VSAGSLAAEQKTLHVYNWSDYIAPdtVANFEKETGIKVVYDVFDSNEVLEGKLMAGStgFDLVVPSASFLERQLAAGVFQPLDKSKL 106
                    45555566688999**********9899988899999************97665533136888888888888888888888888876 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00019
  Lipoprotein_8 251 dsnivlnelasarraGaivysGdivyaalGGdlrdeldenqkPtsdnfhvvrPkdsmvvldfliinkiqkqfeqaayellyel 333
                     s + +n+la++    ai ++Gd+  aa+  +   e       ++ n     Pk+   ++  +     + +++++ay++l+ l
     CTQ27266.1 225 HSSQYINDLANGDICVAIGWAGDVWQAANRAK---E-----AKNGVNVSYFIPKEGALAFFDVFAMPADAKNKDEAYQFLNYL 299
                    57889********************9998542...2.....235566666667776655433334455667777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2719.03
//
Query:       CTQ27267.1  [L=393]
Description: putrescine transporter subunit: ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-38  132.5   0.0    5.3e-38  130.6   0.0    1.8  2  ABC_tran     ABC transporter
      5e-21   74.7   0.0    1.4e-20   73.2   0.0    1.9  1  TOBE_2       TOBE domain
    5.8e-07   29.6   0.0     0.0075   16.1   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00032   20.7   0.0    0.00084   19.3   0.0    1.7  2  RsgA_GTPase  RsgA GTPase
     0.0049   16.3   0.1       0.27   10.6   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0049   17.3   0.1     0.0088   16.4   0.1    1.4  1  AAA_16       AAA ATPase domain
     0.0064   16.7   0.1      0.045   14.0   0.0    2.2  2  AAA_28       AAA domain
     0.0078   15.9   0.0      0.018   14.8   0.0    1.6  1  AAA_29       P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.015   15.5   0.2      0.051   13.9   0.2    1.9  1  AAA_22       AAA domain
      0.022   14.7   0.0      0.039   13.9   0.0    1.4  1  Rad17        Rad17 P-loop domain
      0.035   14.3   0.1       0.23   11.6   0.1    2.1  1  AAA_33       AAA domain
       0.07   12.8   0.0      0.082   12.6   0.0    1.3  1  ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-bindi
       0.14   12.6   0.0       0.21   12.1   0.0    1.2  1  AAA_23       AAA domain
       0.24   10.5   0.0       0.39    9.8   0.0    1.2  1  G-alpha      G-protein alpha subunit
       0.28   10.7   1.4       0.63    9.6   0.0    2.0  2  AAA_25       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.0   4.5e-41   5.3e-38       2     136 ..      52     193 ..      51     194 .. 0.96
   2 ?   -1.0   0.0         2   2.4e+03     124     135 ..     313     324 ..     311     326 .. 0.82

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 4.5e-41
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 ++vsl++++ge+ a++G +G+GKStLl++lag ++pt+G+i ldg dl +   + +++ i +++q   lfp++tv++n             e ++++++
  CTQ27267.1  52 DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLAR--VPPYQRPINMMFQSYALFPHMTVEQNiafglkqdrlpkaEITARVQE 148
                 89************************************************..*******************************9999999888899999 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +l+ + ++e+++++     ++LSgGq+qrvalar+l+k+pkllllDEp+
  CTQ27267.1 149 MLALVHMQEFAKRKP----HQLSGGQRQRVALARSLAKRPKLLLLDEPM 193
                 999999999999998....*****************************6 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2
                 HHTSSEEEEEST CS
                 xxxxxxxxxxxx RF
    ABC_tran 124 lkkpkllllDEp 135
                 l+  k++l+DEp
  CTQ27267.1 313 LRPEKIMLCDEP 324
                 56789******9 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   1.2e-23   1.4e-20       1      76 []     311     391 ..     311     391 .. 0.93

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 1.2e-23
      TOBE_2   1 laiRPEklrla...aagganglsGtVedveylGsstryvvelaggqlvvvrqpnadr.d.salapGdtVelswdpddavvl 76 
                 +a+RPEk++l    +a+g n + G+V +++ylG+ + y+v+l +gq + ++ +n++r +  ++++Gd+V+l+wd+d++vvl
  CTQ27267.1 311 VALRPEKIMLCdepPADGYNFAVGEVIHIAYLGDLSIYHVRLQSGQMISAQLQNEHRhRkGTPTWGDEVRLCWDADSCVVL 391
                 79********987544445899***********************************999*******************98 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00012      0.15       1      23 [.      63      85 ..      63     141 .. 0.73
   2 !   16.1   0.0   6.2e-06    0.0075     220     298 ..     149     225 ..     113     229 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
      AAA_21  1 lnvliGpNgsGKSnLLdaldlla 23
                + +l G+ g+GKS+LL+ l ++ 
  CTQ27267.1 63 IFALLGASGCGKSTLLRMLAGFE 85
                5789***************8873 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 6.2e-06
      AAA_21 220 gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ellkelsrngaQviltTHS 298
                  + ++++    ++ +++lS G+++  al+ +l+ ++   +lll+DEp   L+ kl  r   e++++l+r g+ ++++TH+
  CTQ27267.1 149 MLALVHMQEFAKRKPHQLSGGQRQRVALARSLAKRP---KLLLLDEPMGALDKKLRDRMQlEVVDILERVGVTCVMVTHD 225
                 555666667788999**********9*******999...9****************99988******************8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     7e-07   0.00084      80     127 ..      41      89 ..      17      95 .. 0.75
   2 ?   -3.8   0.0         9   1.1e+04      67      89 ..     207     229 ..     199     232 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 7e-07
                  EE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  80 llvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelkt 127
                  l+ s + ++++++++  + + ++ +l+G SG GKStL+ +l++ ++   
   CTQ27267.1  41 LTKSFDGQHAVDDVSLTIYKgEIFALLGASGCGKSTLLRMLAGFEQPTA 89 
                  555666667777777666555********************99655555 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 9
                  HHHHHHHHTTSEEEE--TTTHTT CS
  RsgA_GTPase  67 elkeelealgyevllvsaktkeg 89 
                  e+ + le++g+++++v  +++e+
   CTQ27267.1 207 EVVDILERVGVTCVMVTHDQEEA 229
                  55677888888888887776665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.032        38      23      41 ..      60      78 ..      35      83 .. 0.66
   2 !   10.6   0.0   0.00022      0.27     119     185 ..     145     210 ..     115     244 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.032
                TSSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 23 sksftaivGpNGSGKsnll 41
                + ++ a++G+ G+GKs ll
  CTQ27267.1 60 KGEIFALLGASGCGKSTLL 78
                4567899*********987 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00022
                 -HHHHHHHHHCTT-STT...CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 119 tkkevsellesagiske...lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke 185
                 + +e+  l++++++ k    +LSgG+++ vala  +A    k+  l llDe   aLD+k + ++   +  
  CTQ27267.1 145 RVQEMLALVHMQEFAKRkphQLSGGQRQRVALARSLA----KRPKLLLLDEPMGALDKKLRDRMQLEVVD 210
                 445555555555554323339********99998876....555699***********999887544443 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   7.3e-06    0.0088      24      69 ..      61     105 ..      48     191 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7.3e-06
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy 69 
                 +e+  l G+sG+GKs+l+r+l+  +e+  +  +  + ++l +  py
  CTQ27267.1  61 GEIFALLGASGCGKSTLLRMLA-GFEQPTAGQIMLDGVDLARVPPY 105
                 47899***************99.56665444454455555555555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.7e-05     0.045       2      21 ..      64      83 ..      63      95 .. 0.84
   2 ?   -0.1   0.0      0.83     1e+03     131     161 ..     198     227 ..     164     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.7e-05
      AAA_28  2 ivitGgestGKTtlleaLaa 21
                ++++G++++GK+tll+ La 
  CTQ27267.1 64 FALLGASGCGKSTLLRMLAG 83
                589***************94 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.83
      AAA_28 131 leereaiderlrealrelgipviivpsgdve 161
                  + r +++  + ++l++ g+ ++ v + d e
  CTQ27267.1 198 KKLRDRMQLEVVDILERVGVTCVMV-THDQE 227
                 4567888889999999999999999.66655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.5e-05     0.018      12      39 ..      51      78 ..      47      82 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
      AAA_29 12 fdghtieidlkgatlltGpsGsGKSTll 39
                 d+ +++i   +++ l G+sG GKSTll
  CTQ27267.1 51 VDDVSLTIYKGEIFALLGASGCGKSTLL 78
                5667777875559**************8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   4.3e-05     0.051       6      31 ..      62      87 ..      58     228 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.3e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlleqlde 31
                 i ++ G sG+GK+tllr+l+   + 
  CTQ27267.1 62 EIFALLGASGCGKSTLLRMLAGFEQP 87
                678999**************987654 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.3e-05     0.039      33      71 ..      49      87 ..      42     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.3e-05
       Rad17 33 ewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgi 71
                ++++  +L   k +i  + G sGCgkst +++L+    +
  CTQ27267.1 49 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP 87
                56677778888889999****************975544 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00019      0.23       4     108 ..      66     226 ..      63     237 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
      AAA_33   4 lvGlpGsGKstlaerllkklg....avllssdt...................................................lrrrlfgtdqqsktd 47 
                 l G++G+GKstl++ l+  ++       +  d                                                    ++ +l+  ++  k++
  CTQ27267.1  66 LLGASGCGKSTLLRMLAGFEQptagQ--IMLDGvdlarvppyqrpinmmfqsyalfphmtveqniafglkqdrlpkaeitarvqEMLALVHMQEFAKRK 162
                 68*************96433333333..33333447777788888888877777777777777777777777776666555544333333344444445 PP

      AAA_33  48 ytrvldrlyqilnelarkalsagrnvildat......nlsrrerarflklarrlgvpvrivvvetde 108
                 + +++   +q++ +lar+ +++ + ++ld +       l+ r + +++ +++r gv   +v v+ d+
  CTQ27267.1 163 PHQLSGGQRQRV-ALARSLAKRPKLLLLDEPmgaldkKLRDRMQLEVVDILERVGVT--CVMVTHDQ 226
                 556666677777.88888888888888888855322222223334778888877755..44444444 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.8e-05     0.082       2      37 ..      48      84 ..      47     237 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.8e-05
                 SHHH.HHHS-EBTT-EEEEEESTTSSHHHHHHHHHHH CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  2 irvl.DalfpivqGqrtlipgafgvGktvisqslskq 37
                 ++++ D+ ++i +G+  +++ga+g+Gk++++++l+  
   CTQ27267.1 48 QHAVdDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF 84
                 566615679***********************99865 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00018      0.21      17      39 ..      56      81 ..      36      83 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
      AAA_23 17 F...skgltlItGpNGaGKTTildAi 39
                +   +  ++++ G  G+GK+T+l+ +
  CTQ27267.1 56 LtiyKGEIFALLGASGCGKSTLLRML 81
                25566689**************9865 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00033      0.39      26      50 ..      64      88 ..      48      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00033
                EEEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha 26 llllGqseSGKsTilkqlkllykkg 50
                + llG+s++GKsT+l+ l  +++++
  CTQ27267.1 64 FALLGASGCGKSTLLRMLAGFEQPT 88
                579*************998777765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00053      0.63      30      53 ..      58      81 ..      51      86 .. 0.87
   2 ?   -0.6   0.3       0.7   8.4e+02     170     188 ..     206     224 ..     133     230 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00053
      AAA_25 30 lpagelallaGapgtGKttlaldl 53
                + +ge+ +l Ga+g+GK+tl+  l
  CTQ27267.1 58 IYKGEIFALLGASGCGKSTLLRML 81
                5689999*************8665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.7
      AAA_25 170 ealeriarrtgaavllvhH 188
                   + +i +r g+++++v H
  CTQ27267.1 206 LEVVDILERVGVTCVMVTH 224
                 2233344455666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2852.76
//
Query:       CTQ27268.1  [L=317]
Description: putrescine transporter subunit: membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-24   84.5  15.7    7.5e-24   84.5  15.7    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   5.9      0.18   3.2e+03      28      44 ..      33      57 ..      15     117 .. 0.63
   2 !   84.5  15.7   4.2e-28   7.5e-24       1     183 [.     117     313 ..     114     315 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.18
  BPD_transp_1 28 lslPsfvlaillvlvf........v 44
                   +lP+++l++l+ l f        +
    CTQ27268.1 33 IALPYLWLILLFMLPFlivfkislA 57
                  4566666555544444333333330 PP

  == domain 2  score: 84.5 bits;  conditional E-value: 4.2e-28
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfv.............laillvlvf...vilsilghlilpviillllsaapyvrlirraalrslpk 81 
                   g++l++ +a +++  ++++l+ l+i+++++ +++             ++  ++l++        + h++l+v i +++ ++p+++l ++ al  ++ 
    CTQ27268.1 117 GYPLAWAVA-HSKPSTRNILLLLVILPSWTSFLIrvyawmgllksngVLNNFLLWLgviDQPLEILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDY 212
                   678888888.************************99999888888885555555556555555666******************************* PP

  BPD_transp_1  82 dlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis.nggvlalviavlllnlvadilqr 177
                   +lvea++ lGa++ ++f++v++P+++  ii+g +l+f+ ++g++v++e+lg+    + ++ +++++  +++    ++++++++++lll++ ++++++
    CTQ27268.1 213 SLVEASLDLGARPLKTFFQVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGP--DSIMIGRVLWQEFFNNRDwPVASAVAIVMLLLLIVPIMWFHK 307
                   ***************************************************43..9999**********9999889999999999999999*****9 PP

  BPD_transp_1 178 lldprv 183
                   + ++ +
    CTQ27268.1 308 HQQKQM 313
                   998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2350.52
//
Query:       CTQ27269.1  [L=281]
Description: putrescine transporter subunit: membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.9e-14   51.5  19.2    9.9e-14   51.5  19.2    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        0.3   11.5   5.9        0.8   10.1   0.1    3.7  3  HRG           Haem-transporter, endosomal/lysosomal, haem-res


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   2.3      0.19   1.7e+03      19      39 ..      14      34 ..       6      79 .. 0.51
   2 !   51.5  19.2   1.1e-17   9.9e-14       3     184 ..      81     273 ..      79     274 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.19
  BPD_transp_1 19 llrpliivllslPsfvlaill 39
                  l+++l +++l+ P++ l+i  
    CTQ27269.1 14 LILVLGFTFLYAPMLMLVIYS 34
                  333333333333333333332 PP

  == domain 2  score: 51.5 bits;  conditional E-value: 1.1e-17
  BPD_transp_1   3 llGilaa....lnrnkkldkllrpliivllslPsfvlaillvlvf....vilsilg.hlilpviillllsaapyvrlirraalrslpkdlveaaral 90 
                   +lG +aa    ++ ++++++ + ++i ++l +P ++ ++ l+l+f      +++    ++l + ++ +++ ++yv +++++ lr+l+++ +eaa  l
    CTQ27269.1  81 ILGTIAAvvmvRFGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFvalgHAIGWPSdRGMLTIWLAHVTFCTAYVAVVISSRLRELDHSIEEAAMDL 177
                   6888888887677788999*****************888888888888844444444789999********************************** PP

  BPD_transp_1  91 GasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG...lgtllleailgydyseisnggvlalviavlllnlvadilqrlldprvr 184
                   Ga + ++f+ ++lP+++p +i+g +laf+++l + v+++f+ + pG   l +l++++  +   +ei++ ++l+l+++ ++  ++ ++++r+  +rvr
    CTQ27269.1 178 GAAPLKVFFVITLPMIMPAVISGWLLAFTLSLDDLVIASFVSG-PGattLPMLVFSSVRMGVNPEINALATLILGVVGIVGFIAWYLMARAEKQRVR 273
                   *****************************************95.55488888888888888889999888899999999888888888887777776 PP

>> HRG  Haem-transporter, endosomal/lysosomal, haem-responsive gene
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.0      0.12   1.1e+03       6      21 ..      74      89 ..      62      94 .. 0.67
   2 ?    0.5   0.0     0.095   8.5e+02      10      28 ..     141     159 ..     139     181 .. 0.80
   3 ?   10.1   0.1     9e-05       0.8       7      34 ..     246     273 ..     242     278 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.12
         HRG  6 aygifgsilglsaflv 21
                + +  + ilg++a++v
  CTQ27269.1 74 CAATAAAILGTIAAVV 89
                4455555666666665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.095
         HRG  10 fgsilglsaflvylvlaiv 28 
                 + + l+ + f++ +v+ ++
  CTQ27269.1 141 LTIWLAHVTFCTAYVAVVI 159
                 5567888999999999665 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 9e-05
         HRG   7 ygifgsilglsaflvylvlaivnkqgvs 34 
                  +++ +++g+++f++++ +a  +kq v 
  CTQ27269.1 246 ATLILGVVGIVGFIAWYLMARAEKQRVR 273
                 5788899******************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2158.85
//
Query:       CTQ27270.1  [L=162]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-61  207.2   4.7    1.2e-61  206.9   4.7    1.0  1  DUF2593   Protein of unknown function (DUF2593)
  ------ inclusion threshold ------
        1.6    8.6   4.9       0.54   10.2   2.2    1.5  2  SLATT_1   SMODS and SLOG-associating 2TM effector domain 1


Domain annotation for each model (and alignments):
>> DUF2593  Protein of unknown function (DUF2593)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.9   4.7   1.3e-65   1.2e-61       1     140 [.      21     160 ..      21     161 .. 0.99

  Alignments for each domain:
  == domain 1  score: 206.9 bits;  conditional E-value: 1.3e-65
     DUF2593   1 iPvavlvagiaiiatrvldvvllvnelGlsglssfisrsaqaWdstlillaslllvlleircafavlrgrnwgrWlylltqiivvlylllaslgelyPe 99 
                 +P++v+va+ aii +r ld+++++n lGl+gl++fi+rs+q+W++tl++l sl lv++ei+caf++++grnw+rW+ylltqii++ yl++aslg+ yPe
  CTQ27270.1  21 VPALVQVAAFAIILIRGLDLLMILNLLGLQGLNEFIHRSVQTWNLTLVFLGSLALVFIEIWCAFSLVKGRNWARWIYLLTQIIAAGYLWAASLGYGYPE 119
                 699************************************************************************************************ PP

     DUF2593 100 lfsisgeskaeilhslllqklPdllvllLLfvpassrrffr 140
                 lfsi+gesk+ei+hsl++qklPdllvl+LLfvpa+ rrffr
  CTQ27270.1 120 LFSIPGESKREIFHSLVMQKLPDLLVLTLLFVPANCRRFFR 160
                 ****************************************8 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.67     6e+03      33      42 ..      24      33 ..      10      45 .. 0.53
   2 ?   10.2   2.2     6e-05      0.54      19      70 ..      55     111 ..      52     116 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.67
     SLATT_1 33 llellallla 42
                l++++a +++
  CTQ27270.1 24 LVQVAAFAII 33
                3333333333 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 6e-05
     SLATT_1  19 eneraakrwrlllillellalllaalr.afgelsv....dlvgvlaavaaallaWle 70 
                 + +r+ ++w+l+l++l+ lal+++ +  af+ ++      ++ +l+ ++aa+  W++
  CTQ27270.1  55 FIHRSVQTWNLTLVFLGSLALVFIEIWcAFSLVKGrnwaRWIYLLTQIIAAGYLWAA 111
                 67999****************9986666666665554488999************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1382.00
//
Query:       CTQ27271.1  [L=375]
Description: 23S rRNA m(5)U747 methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-19   67.7   0.0    1.2e-16   60.7   0.0    2.3  1  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
    2.2e-08   34.0   0.0    4.6e-08   33.0   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
      1e-05   25.1   0.0    1.6e-05   24.5   0.0    1.2  1  MTS              Methyltransferase small domain
    4.4e-05   24.1   0.0    0.00012   22.7   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
     0.0026   17.4   0.0     0.0042   16.7   0.0    1.3  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
  ------ inclusion threshold ------
       0.01   16.5   0.0      0.022   15.4   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
      0.037   13.7   0.0      0.058   13.0   0.0    1.3  1  Cons_hypoth95    Conserved hypothetical protein 95
      0.047   13.2   0.0      0.082   12.4   0.0    1.3  1  Methyltransf_4   Putative methyltransferase
      0.058   13.0   0.0      0.091   12.4   0.0    1.3  1  NodS             Nodulation protein S (NodS)
      0.067   13.9   0.0       0.12   13.1   0.0    1.4  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   6.5e-20   1.2e-16     177     356 ..     207     373 ..     203     374 .. 0.90

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 6.5e-20
  tRNA_U5-meth_tr 177 nsftqPnaavnekmleWalevtqeskg.dllelycGnGnfslalarnfekvlateiakssveaaqyniaankidnvqiirlsaeeltealkkkr 269
                      +sf q n av+ ++   a + ++      + +l+cG G f l  a+   ++   eia  +++ a+   a+  + n+++  l + ++++  ++  
       CTQ27271.1 207 QSFFQTNPAVASRLYATARDWVRALPVqHMWDLFCGVGGFGLHCATPTMRLTGIEIAPEAIACARQSAAQLGLSNLHFQALDSTQFATHEAD-- 298
                      79******************99987653899***********************************************99999888654332.. PP

  tRNA_U5-meth_tr 270 efrrlkgidlksyafetifvdPPraGldketvklvkky..erilyiscnPetlkenleelsethrverlalfdqfpythhlesGvllek 356
                                   a + ++v+PPr G+  e ++ +++   + i+y scn +t++ ++++ls  +rver+ lfd fp+t h e   ll +
       CTQ27271.1 299 -------------APQLVLVNPPRRGIGAELCDYLSRMapPYIIYSSCNARTMATDIARLS-GYRVERVQLFDMFPHTAHYEVLTLLVR 373
                      .............34679***************999873358******************8.69******************9888765 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   2.6e-11   4.6e-08       7      69 ..     236     295 ..     234     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 2.6e-11
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieelekl 69 
                      + Dl CG G +++  a    p  +++Gi+i +eai  Ar+ a++lgl+n++F++ d +++ ++
       CTQ27271.1 236 MWDLFCGVGGFGLHCA---TPTMRLTGIEIAPEAIACARQSAAQLGLSNLHFQALDSTQFATH 295
                      67**************...67889********************************9997655 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   8.9e-09   1.6e-05      33     108 ..     234     310 ..     209     324 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 8.9e-09
                 SEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTTTSTTS-EEEEEE---ST CS
         MTS  33 gkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle...vevvasdvleeveekkfdlivsNPPfh 108
                 +++ Dl cG+G  g+++a   p++++t +++  +A+++a++ +++ +l+    +++ s  +++ e +  +l++ NPP +
  CTQ27271.1 234 QHMWDLFCGVGGFGLHCAT--PTMRLTGIEIAPEAIACARQSAAQLGLSnlhFQALDSTQFATHEADAPQLVLVNPPRR 310
                 5689*************98..8888*******************99998855666666777788888999*******65 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   6.7e-08   0.00012       3      62 ..     238     296 ..     237     307 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 6.7e-08
                      EET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSST CS
  Methyltransf_25   3 dlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfed 62 
                      dl cG G + l++a+     ++tg++i++e+++ ar+ a++ gl n++f+  d +++  ++
       CTQ27271.1 238 DLFCGVGGFGLHCATPT--MRLTGIEIAPEAIACARQSAAQLGLsNLHFQALDSTQFATHE 296
                      899***********885..**********************999******99999876543 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.3e-06    0.0042       4      84 ..     236     312 ..     233     335 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.3e-06
  Methyltransf_15   4 ilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvflSpPwGGp 84 
                      + Dlf+G GG   + a    +  +iei +e +aca + a   g s+ + +   d    +++ + e+   +lv++ pP  G+
       CTQ27271.1 236 MWDLFCGVGGFGLHCATPTMRLTGIEIAPEAIACARQSAAQLGLSN-LHFQALDS---TQFATHEADAPQLVLVNPPRRGI 312
                      67************************************99998765.44444444...44444455567789999988776 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   1.2e-05     0.022       2      63 ..     238     298 ..     237     304 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
                      EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EE CS
  Methyltransf_11   2 dvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfD 63 
                      d+ cG G +  ++a   +r++g+++++e++++a++ a + gl ++ f+  d ++  f+ +  D
       CTQ27271.1 238 DLFCGVGGFGLHCATPTMRLTGIEIAPEAIACARQSAAQLGLsNLHFQALDSTQ--FATHEAD 298
                      56699999999999888************************9887777777665..5555555 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.2e-05     0.058      40     123 ..     231     309 ..     214     353 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-05
                    HCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SS CS
  Cons_hypoth95  40 iegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPy 123
                    +  +++ Dlf+G G+ gl ++     + + +e  +ea++  ++  ++l+l++    l  +al++ +  ++++   ++v ++PP 
     CTQ27271.1 231 LPVQHMWDLFCGVGGFGLHCATPT-MRLTGIEIAPEAIACARQSAAQLGLSN----LHFQALDSTQFATHEADAPQLVLVNPPR 309
                    6678899**************988.6899********************997....3333333333333334445799999995 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.6e-05     0.082       7      64 ..     238     293 ..     234     304 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.6e-05
                     EET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHH CS
  Methyltransf_4   7 eiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvl 64 
                     ++ cG G+f ++ A   P++ + GiEi  + +a + +++++l+l+Nl+    d +++ 
      CTQ27271.1 238 DLFCGVGGFGLHCA--TPTMRLTGIEIAPEAIACARQSAAQLGLSNLHFQALDSTQFA 293
                     77799999988887..69******************************9999986665 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.1e-05     0.091      44     105 ..     233     296 ..     211     305 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.1e-05
        NodS  44 iadalevGcaaGalterlapyckrltvvdvveeaiararervke..sshiswivsdvqqfstde 105
                 + ++ ++ c  G +  + a  + rlt +++ +eaia ar+   +   s++ +   d +qf t+e
  CTQ27271.1 233 VQHMWDLFCGVGGFGLHCATPTMRLTGIEIAPEAIACARQSAAQlgLSNLHFQALDSTQFATHE 296
                 55666788*******************************9887622588999999999998876 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.8e-05      0.12       3      57 ..     239     288 ..     237     305 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.8e-05
  Methyltransf_12   3 iGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnveleald 57 
                      + cG+G +  +++    + ++tg++i p+ai+ a++  a+ +  n ++    ald
       CTQ27271.1 239 LFCGVGGFGLHCATP--TMRLTGIEIAPEAIACARQSAAQLGLSNLHFQ---ALD 288
                      55**********999..**************888888888776554443...333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3175.04
//
Query:       CTQ27272.1  [L=238]
Description: Uncharacterized transcriptional regulatory protein YclJ [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-28   98.7   0.0    3.3e-28   97.6   0.0    1.6  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
    1.8e-27   95.7   0.1    2.7e-27   95.2   0.1    1.3  1  Response_reg  Response regulator receiver domain
  ------ inclusion threshold ------
       0.19   12.0   0.0       0.35   11.1   0.0    1.4  1  OKR_DC_1_N    Orn/Lys/Arg decarboxylase, N-terminal domain


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   5.5e-32   3.3e-28       1      77 []     153     229 ..     153     229 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 5.5e-32
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ge+v+ltp+ef+lL +++++pg+v+sr  Lle+vwg+++++ ++tv++hi+rLR k+e d+++p+ I tv+g+GY++
   CTQ27272.1 153 GETVDLTPREFDLLYYFARHPGEVFSRLALLEQVWGYQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKF 229
                  6889***********************************************************************97 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.1   4.5e-31   2.7e-27       1     111 [.       5     114 ..       5     115 .. 0.95

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 4.5e-31
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l+v+Dd+++++llr  l++egy+ v+  +dg +al+ l+++  d ++lD+++pg+dGle++++ir+  + lpvii++a+++e ++v +l++gadd+
    CTQ27272.1   5 ILLVEDDEDIATLLRLNLQDEGYQIVH-EADGGQALARLETQVWDAVILDLMLPGVDGLEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDY 100
                   89*********************5555.5678899************************************************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l+Kpf+  eL++++
    CTQ27272.1 101 LAKPFSLLELIARV 114
                   **********9998 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.9e-05      0.35      12      75 ..      21      86 ..      12      92 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.9e-05
  OKR_DC_1_N 12 alekegfevvgvtstdDllsvieqnsriaavvlsvd...deaaelldeirernedlPvFllaetrts 75
                 l+ eg+++v  ++ + +l+ +e+    +av+l++     +  e+++ ir+    lPv +++ ++++
  CTQ27272.1 21 NLQDEGYQIVHEADGGQALARLET-QVWDAVILDLMlpgVDGLEICRRIRQMTRYLPVIIISARTSE 86
                688899999999999977777777.4579******9**99999*****************9986654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 2067.55
//
Query:       CTQ27273.1  [L=490]
Description: Osmosensitive K+ channel histidine kinase KdpD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-18   64.1   0.8    4.1e-17   62.0   0.8    2.2  1  HisKA          His Kinase A (phospho-acceptor) domain
    1.5e-17   64.1   0.0    2.6e-17   63.4   0.0    1.4  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    1.1e-06   28.7   0.0    2.3e-06   27.6   0.0    1.5  1  HATPase_c_2    Histidine kinase-like ATPase domain
     0.0007   19.5   0.0     0.0015   18.4   0.0    1.4  1  HATPase_c_5    GHKL domain
  ------ inclusion threshold ------
      0.049   13.5   1.1      0.092   12.6   1.1    1.4  1  FA_desaturase  Fatty acid desaturase
       0.12   12.2   0.0       0.23   11.3   0.0    1.4  1  HATPase_c_3    Histidine kinase-, DNA gyrase B-, and HSP90-li
        1.2    9.6   4.8         12    6.4   2.0    2.3  2  FtsX           FtsX-like permease family


Domain annotation for each model (and alignments):
>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.8   1.6e-20   4.1e-17       2      67 .]     269     336 ..     268     336 .. 0.93

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 1.6e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHH..HC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaL..kregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 +++f+a+++H+LrtPL+a+lg++e+L  k+e  + ee ++yl ++ ++++ ++hl ++l +l+r+e+g
  CTQ27273.1 269 RREFVANISHDLRTPLTALLGYLETLtlKDEWLTAEERRQYLTIALRQGNKVRHLSQQLFELARLEHG 336
                 89***********************9776666777******************************987 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0     1e-20   2.6e-17       3     110 ..     384     490 .]     382     490 .] 0.86

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 1e-20
                 HHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCS.TTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTT CS
   HATPase_c   3 ekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfe.kfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgr 100
                  + +++++ nl+dNa+++++ +gei++ + +++++l+++v DnG G++ + ++ lf+ +    ++++++  + GlGl ivk++ el+gG+i++ ++   
  CTQ27273.1 384 VSMIERVVTNLLDNAMRHTPVGGEIRLAVWQENQQLQVEVADNGAGVDAALRDDLFQrPSAL-STQASREDRGGLGLLIVKRMLELHGGDIRLVESV-S 480
                 566889************88**********7558***********************64433.56777778889*******************4444.6 PP

                 EEEEEEEEES CS
   HATPase_c 101 Gttftftlpl 110
                 G +f+f++pl
  CTQ27273.1 481 GARFRFFVPL 490
                 ******9986 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0     9e-10   2.3e-06      39     108 ..     390     465 ..     380     469 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 9e-10
  HATPase_c_2  39 actNavehayleap.egpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikgl 108
                  ++tN    a ++ p  g++++++++++++l+vevaD+G+g d++ ++d  +  p      +  +++gG+Gl+++k++
   CTQ27273.1 390 VVTNLLDNAMRHTPvGGEIRLAVWQENQQLQVEVADNGAGVDAALRDDLFQR-PsalstqASREDRGGLGLLIVKRM 465
                  5788888899999999************************999876655443.3478898999***********998 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   5.7e-07    0.0015       7      86 ..     388     474 ..     383     486 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 5.7e-07
  HATPase_c_5   7 cvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg...........ekkklesskskkeehGiGlksireivkkykgnls 86 
                   +++ nlLdNA+           +Irl v++++++l +++  + +g           +   l ++ s++++ G+Gl  ++++++ ++g+++
   CTQ27273.1 388 ERVVTNLLDNAMRHTPVG----GEIRLAVWQENQQLQVEVADNGAGvdaalrddlfqRPSALSTQASREDRGGLGLLIVKRMLELHGGDIR 474
                  57999******9776554....58**************9998888877777766653336677889999***************9999987 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.1   3.6e-05     0.092     117     167 ..     155     204 ..     125     223 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.6e-05
  FA_desaturase 117 wlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlv 167
                    +l+++ + +++++ ++  w+ ++w ++l+++l+++l+ ll++gla+ +w+ 
     CTQ27273.1 155 YLYIILQGETFNQLAADAWQKTLWSIVLWTLLLVALFGLLAGGLAW-FWVT 204
                    7788888889999999999999999999998888888888888877.8876 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.8e-05      0.23       3      62 ..     386     448 ..     384     460 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.8e-05
  HATPase_c_3   3 l.ekAlaelvdNsld..AdaenvkievnknrgktgeivieDdGkGmseeelknal.rlatsske 62 
                  + e +++ l+dN++       ++ + v ++ +++ ++ + D+G+G++ +  ++ + r+   s++
   CTQ27273.1 386 MiERVVTNLLDNAMRhtPVGGEIRLAVWQE-NQQLQVEVADNGAGVDAALRDDLFqRPSALSTQ 448
                  558899999***997445556788888886.589************987666655245544444 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.032        82      18      49 ..       3      35 ..       1      91 [. 0.70
   2 ?    6.4   2.0    0.0049        12      14      50 ..     174     210 ..     172     230 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.032
        FtsX 18 lllllteillitlvalviGlglgllaaql.lsd 49
                ++l l++ l++++v+l++ +++++ a ql +s+
  CTQ27273.1  3 RRLSLSQRLALVVVSLLMLCAVAVCAVQLhSSA 35
                556677778888999999999877777763222 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0049
        FtsX  14 kkqvlllllteillitlvalviGlglgllaaqllsdv 50 
                 +k+++ ++l+ +ll++l++l++G ++ ++++ ++  +
  CTQ27273.1 174 QKTLWSIVLWTLLLVALFGLLAGGLAWFWVTRPVRLL 210
                 789999*****************77777777765444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3513.30
//
Query:       CTQ27274.1  [L=243]
Description: arginine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-72  241.3   0.2    9.3e-72  241.1   0.2    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    4.3e-06   26.9   0.0    0.00021   21.5   0.0    2.3  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine
     0.0014   18.7   0.1     0.0042   17.1   0.0    1.8  2  NMT1             NMT1/THI5 like
     0.0081   15.8   0.1      0.022   14.3   0.1    1.7  1  Phosphonate-bd   ABC transporter, phosphonate, periplasmic su
  ------ inclusion threshold ------
      0.011   15.3   0.2      0.029   13.9   0.2    1.6  1  YhfZ_C           YhfZ C-terminal domain
      0.023   14.2   0.0      0.049   13.0   0.0    1.5  1  NMT1_3           NMT1-like family


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.1   0.2   3.1e-75   9.3e-72       1     224 [.      23     242 ..      23     243 .] 0.96

  Alignments for each domain:
  == domain 1  score: 241.1 bits;  conditional E-value: 3.1e-75
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 + +gv+a+ypPf+ +d+n++++Gfd+dla+a++k+++ +++f++  +d+lipalk +k+D++i+++ itpeR ++v+F++py+ ++  ++++k++    
  CTQ27274.1  23 ISFGVSATYPPFESMDANNQIVGFDIDLAHALCKQMQAECTFTNHAFDSLIPALKFKKYDAVISGMDITPERSKQVAFTDPYYANSALVIAKKDA---- 117
                 568****************************************77*****************************************999999653.... PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE...ECGGCECEEEEEEETTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv...eeplsseeyaiavrkgd 195
                   + s++dLkgk++g  +g+t++++l+ +++ ++++v +d++++a+ +Lkngr+d v++d +v+++++k+np + +      ++++++ +++iavr+++
  CTQ27274.1 118 --FHSFDDLKGKRIGMENGTTHQKYLQDKHP-EVKTVAYDSYQNAIIDLKNGRIDGVFGDTAVVNEWLKTNPQLGAATPkvtDPQYFGTGLGIAVRPDN 213
                 ..77888*********************887.89999****************************************999******************* PP

                 HHHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 196 seLrkainkalaelkadgtlakisekWfg 224
                 ++L++++n+al+++kadgt++kis++Wf 
  CTQ27274.1 214 KALLEKLNAALKAIKADGTYQKISNQWFP 242
                 ****************************6 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   7.1e-08   0.00021      26     113 ..      41     115 ..      26     117 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7.1e-08
                      GGEESHHHHHHHHHHHHHT-EEEEEE-TT-----BETTTTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEEES CS
  Lig_chan-Glu_bd  26 eryeGfcidLlkelakklgfkYelklvedgkyGskkekkkewnGmigellekkadlavapltitaeReevvdFtkpfmelgisilikk 113
                      +++ Gf idL ++l k+++ + ++             +++  + +i  l  kk d +++ + it+eR++ v Ft+p++  +  ++ kk
       CTQ27274.1  41 NQIVGFDIDLAHALCKQMQAECTF-------------TNHAFDSLIPALKFKKYDAVISGMDITPERSKQVAFTDPYYANSALVIAKK 115
                      555555555555555555444444.............3446889999*******************************9999998887 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         1     3e+03     121     147 ..      61      87 ..      51      96 .. 0.82
   2 !   17.1   0.0   1.4e-06    0.0042      75     146 ..     108     173 ..      98     196 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1
                 G-EEEE-.TT-HHHHHHCTSSSEEECE CS
        NMT1 121 dvtlvnvggtslakalltgkvDaaigg 147
                 ++t+ n  ++sl++al  +k Da+i g
  CTQ27274.1  61 ECTFTNHAFDSLIPALKFKKYDAVISG 87 
                 678888889999999999999999865 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.4e-06
                 EEEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEEC CS
        NMT1  75 sglivlkdsgikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaaig 146
                 s+l+  k++  +s+ DLkGkrig+ ++    ++ ++ l+ ++ + + v   +  + +++ +l +g++D ++g
  CTQ27274.1 108 SALVIAKKDAFHSFDDLKGKRIGMENG----TTHQKYLQDKHPEVKTVAYDS--YQNAIIDLKNGRIDGVFG 173
                 6788888899**************994....666777777777666666633..345555999999998884 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   7.5e-06     0.022      86     220 ..     107     230 ..      93     240 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.5e-06
                     EEEEEEETTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--HHHHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH-HHHHT CS
  Phosphonate-bd  86 rsviivradsdiqsledLkgktiafvspsStsGylvpaalLvkeagldpeddfsevfsgshdaavlavlsgdadaaavsadaledlvaegpedkd 180
                      s+++ ++ ++ +s++dLkgk+i+++      G+  +++ L   ++++pe   ++v  +s+++a+  + +g++d  + ++ ++++  +++p   +
      CTQ27274.1 107 NSALVIAKKDAFHSFDDLKGKRIGMEN-----GTTHQKY-L---QDKHPE--VKTVAYDSYQNAIIDLKNGRIDGVFGDTAVVNEWLKTNPQLGA 190
                     47788888899**************88.....5556666.9...477887..799999*************************999999987776 PP

                     TEEEEEEEEEE.E--EEEEETTS-HHHHHHHHHHHHH---S CS
  Phosphonate-bd 181 elrviassppi.pndpvvvrkelseelkekiqdallslaet 220
                     ++  +   + +  + +++vr++  ++l ek+ +al +++ +
      CTQ27274.1 191 ATPKVTDPQYFgTGLGIAVRPD-NKALLEKLNAALKAIKAD 230
                     6655555444445567788888.566788888888888764 PP

>> YhfZ_C  YhfZ C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   9.8e-06     0.029      89     161 ..      99     171 ..      49     197 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.8e-06
      YhfZ_C  89 elGpetYvsahvlllrdgekseikd..glrvgvDsnSlDqkilteaifegkdvelveisynqllelllkgkiDav 161
                  +++  Y ++  ++ ++++ ++ +d  g r+g+ + ++ qk+l ++  e k v++   sy++++  l++g+iD v
  CTQ27274.1  99 AFTDPYYANSALVIAKKDAFHSFDDlkGKRIGMENGTTHQKYLQDKHPEVKTVAY--DSYQNAIIDLKNGRIDGV 171
                 466655555555556666667777799*******************999888888..47**************86 PP

>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.6e-05     0.049      93     170 ..     108     177 ..      95     183 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
      NMT1_3  93 fqlvvskdsgigsiadlkgkrvsvGpegsGtegsarailealglsekdlklleelgygesadalkdgqldgaalvaGv 170
                  +lv++k+  ++s++dlkgkr+  G e+ +t++++   l+    +  ++k++++ +y++++  lk+g++dg++  ++v
  CTQ27274.1 108 SALVIAKKDAFHSFDDLKGKRI--GMENGTTHQKY---LQ---DKHPEVKTVAYDSYQNAIIDLKNGRIDGVFGDTAV 177
                 4678899999**********96..77888888554...33...4456666677889***************9976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1821.68
//
Query:       CTQ27275.1  [L=222]
Description: arginine transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-13   51.2   8.4    1.2e-13   51.2   8.4    2.0  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.58    9.9   3.1       0.46   10.3   0.1    2.1  2  SPC25         Microsomal signal peptidase 25 kDa subunit (SPC


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   3.5     0.077   6.9e+02     157     176 ..      18      37 ..       4      46 .. 0.51
   2 !   51.2   8.4   1.4e-17   1.2e-13      18     182 ..      46     214 ..      32     217 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.077
  BPD_transp_1 157 gvlalviavlllnlvadilq 176
                   +++a +i+ l+l+l++ i+ 
    CTQ27275.1  18 LTVASIIVALILSLILTIIL 37 
                   33333333444444444333 PP

  == domain 2  score: 51.2 bits;  conditional E-value: 1.4e-17
  BPD_transp_1  18 kllrpliivllslPsfvlaillvlvf..........vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlP 104
                   +++r++i ++ ++P +v ++l+++             ++  +   +l ++i+l l +a+y++ ++++a+r++p+++++   alG+s++ ++  ++lP
    CTQ27275.1  46 WIVRGYITLFTGTPLLVQIFLIYYGPgqfpslqdypWLWHLISEPWLCALIALSLNSAAYTTQLFYGAIRAIPDGQWQSCSALGMSKKDTLA-ILLP 141
                   689**************888888655999***9997666677788888*****************************************999.**** PP

  BPD_transp_1 105 nalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                    a+  ++++  + ++++++ ++l+++++    l  ++ + +l y  ++    ++ a++i++l++n ++ +l+rl++++
    CTQ27275.1 142 YAFKRALSSYSNEVVLVFKSTSLAYTIT----LMEVMGHGQLLYGRTYDV-MVFGAAGIIYLIVNGLLTLLMRLVERK 214
                   ****************************....***************999.9999999*****************998 PP

>> SPC25  Microsomal signal peptidase 25 kDa subunit (SPC25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.4      0.08   7.2e+02      55      79 ..      15      39 ..       4      56 .. 0.68
   2 ?   10.3   0.1   5.1e-05      0.46      59      89 ..     190     220 ..     156     222 .] 0.83

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.08
       SPC25 55 skpvlaiavvlYfilsgiltlystf 79
                s +++++ +++  ils ilt++ t+
  CTQ27275.1 15 SLTLTVASIIVALILSLILTIILTL 39
                4555666666666777777766555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 5.1e-05
       SPC25  59 laiavvlYfilsgiltlystfvekntifvgk 89 
                   +a ++Y i++g+ltl +++ve+++  + +
  CTQ27275.1 190 FGAAGIIYLIVNGLLTLLMRLVERKALAFER 220
                 445669*****************99876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1627.68
//
Query:       CTQ27276.1  [L=238]
Description: arginine transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-18   65.4  10.7    5.5e-18   65.4  10.7    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.3   0.6    0.0067   1.2e+02     149     180 ..       6      36 ..       2      39 .. 0.73
   2 !   65.4  10.7   3.1e-22   5.5e-18       1     184 [.      25     231 ..      25     232 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.0067
  BPD_transp_1 149 dyseisnggvlalviavlllnlvadilqrlld 180
                   ++++++ g+++ l+++ l++ lv+  l ++l+
    CTQ27276.1   6 PLASAA-GMTVGLAVCALVIGLVLAMLFAVLE 36 
                   444455.8888899999999999888888776 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 3.1e-22
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf.........................vilsilg.hlilpviillllsaapyv 68 
                   g++l++l a     + +++ +l ++++ +l++lP ++++++++  f                         + +  +  + +l ++i+l l +a+y+
    CTQ27276.1  25 GLVLAMLFAvleSVKWRPVAWLATGIVTILRGLPEILVVLFIY--FgssqllltlsdgftiplgftqipvqMQIENFDvSPFLCGAIALSLLYAAYA 119
                   7889999998887777999******************999988..4469999999**************8866666663455559************ PP

  BPD_transp_1  69 rlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviav 165
                     + r+al+++p++++e   alG+s+  if++ v+P++ + +++gl++++  ll++++l++++     +++l+l++ ++   ++  +  ++++++++
    CTQ27276.1 120 SQTLRGALKAVPQGQWESGQALGLSKAAIFFRLVMPQMWRHALPGLGNQWLVLLKDTALVSLIS----VNDLMLQTKSIATRTQEPFNWYIIAAAIY 212
                   ****************************************************************....8888888888877777777889999**** PP

  BPD_transp_1 166 lllnlvadilqrlldprvr 184
                   l+++l++  + + +d+r +
    CTQ27276.1 213 LVITLLSQYILKRIDQRAT 231
                   ****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 1864.50
//
Query:       CTQ27277.1  [L=250]
Description: arginine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-70  237.0   0.9    1.9e-70  236.8   0.9    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    7.1e-05   23.0   0.0     0.0025   18.0   0.0    2.5  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine
  ------ inclusion threshold ------
      0.073   12.7   0.1       0.85    9.2   0.1    2.1  2  Phosphonate-bd   ABC transporter, phosphonate, periplasmic su


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.8   0.9   3.1e-74   1.9e-70       1     224 [.      30     249 ..      30     250 .] 0.97

  Alignments for each domain:
  == domain 1  score: 236.8 bits;  conditional E-value: 3.1e-74
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 +r++++a+ypPf+ +d+n++++Gfdvdla+a++k++  +++f+++ +d+lip+lk  ++D+++a++ itpeRe++v+Fs+py++++  ++ +++     
  CTQ27277.1  30 IRFATEASYPPFELVDANNQIVGFDVDLANALCKEIDATCTFTNQAFDSLIPGLKFRRFDAVMAGMDITPEREKQVLFSTPYYDNSALFVGQQG----- 123
                 799****************************************99*****************************************99998844..... PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE...ECGGCECEEEEEEETTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv...eeplsseeyaiavrkgd 195
                  +++s+++Lkgkkvgvq+g+t++++++ +++ ++++v++d++++a ++L+ngr+dav++d +v+ +++k np++ +v +   ++++++ +++iavr+g+
  CTQ27277.1 124 -KFTSIDQLKGKKVGVQNGTTHQKFITDKHP-EITTVPYDSYQNAKLDLQNGRIDAVFGDTAVVTEWLKSNPKLAAVGDkvtDKAYFGTGLGIAVRQGN 220
                 .477777********************9887.89999************************************************************** PP

                 HHHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 196 seLrkainkalaelkadgtlakisekWfg 224
                 ++L++++n+al+++k+dgt++ i++kWf+
  CTQ27277.1 221 TDLQQKFNAALEKVKKDGTYQTIYNKWFQ 249
                 ****************************7 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.2e-07    0.0025      63     107 ..      72     116 ..      28     123 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.2e-07
                      TTTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-E CS
  Lig_chan-Glu_bd  63 kkkewnGmigellekkadlavapltitaeReevvdFtkpfmelgi 107
                      +++  + +i  l  ++ d ++a + it+eRe+ v F++p+++ + 
       CTQ27277.1  72 TNQAFDSLIPGLKFRRFDAVMAGMDITPEREKQVLFSTPYYDNSA 116
                      344678899999999*************************98765 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00014      0.85      87     175 ..     115     192 ..     108     203 .. 0.78
   2 ?    4.7   0.0    0.0032        19     139     171 ..     156     188 ..     148     220 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00014
                     EEEEEETTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--HHHHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH- CS
  Phosphonate-bd  87 sviivradsdiqsledLkgktiafvspsStsGylvpaalLvkeagldpeddfsevfsgshdaavlavlsgdadaaavsadaledlvaeg 175
                     s+++v+++ + +s+++Lkgk++++       G+  +   ++   +++pe  +++v  +s+++a l + +g++da + ++ ++++  +++
      CTQ27277.1 115 SALFVGQQGKFTSIDQLKGKKVGVQN-----GTTHQ-KFIT---DKHPE--ITTVPYDSYQNAKLDLQNGRIDAVFGDTAVVTEWLKSN 192
                     88999999999999999999999965.....33333.4464...55665..78889999999999999999999999988887766655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0032
                     SEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHH CS
  Phosphonate-bd 139 sevfsgshdaavlavlsgdadaaavsadaledl 171
                     ++v  +s+++a l + +g++da + ++ ++++ 
      CTQ27277.1 156 TTVPYDSYQNAKLDLQNGRIDAVFGDTAVVTEW 188
                     444555666666666666666666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2004.10
//
Query:       CTQ27278.1  [L=242]
Description: arginine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-35  121.0   0.0    6.7e-35  120.6   0.0    1.2  1  ABC_tran       ABC transporter
    5.8e-12   46.0   2.2    4.6e-07   29.9   0.1    2.1  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    7.6e-07   28.8   0.0    9.4e-05   21.9   0.0    2.2  2  SMC_N          RecF/RecN/SMC N terminal domain
    4.5e-05   23.3   0.0       0.06   13.0   0.1    2.1  2  AAA_15         AAA ATPase domain
    0.00017   21.5   0.0    0.00035   20.5   0.0    1.6  2  RsgA_GTPase    RsgA GTPase
    0.00037   20.9   0.1    0.00056   20.3   0.1    1.4  1  AAA_16         AAA ATPase domain
     0.0013   17.5   0.0      0.026   13.2   0.0    2.0  2  AAA_13         AAA domain
     0.0036   17.8   0.0     0.0061   17.1   0.0    1.4  1  AAA_23         AAA domain
     0.0044   16.7   0.0      0.008   15.9   0.0    1.4  1  AAA_29         P-loop containing region of AAA domain
     0.0093   16.2   0.1      0.092   13.0   0.1    2.1  1  AAA_22         AAA domain
  ------ inclusion threshold ------
       0.02   14.6   0.0      0.051   13.3   0.0    1.8  1  AAA_30         AAA domain
      0.027   13.3   0.2       0.65    8.7   0.1    2.5  2  ABC_ATPase     Predicted ATPase of the ABC class
      0.041   14.0   0.0       0.09   12.9   0.0    1.6  2  MMR_HSR1       50S ribosome-binding GTPase
      0.064   13.8   0.1          1    9.9   0.0    2.6  3  AAA_18         AAA domain
      0.073   12.8   0.0        1.1    9.0   0.0    2.2  2  IstB_IS21      IstB-like ATP binding protein
        0.1   12.3   0.0       0.35   10.6   0.0    1.8  2  AAA_24         AAA domain
       0.11   12.0   0.1        1.9    8.0   0.0    2.2  2  AAA_25         AAA domain
       0.14   11.9   0.0       0.25   11.0   0.0    1.5  1  Guanylate_kin  Guanylate kinase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.6   0.0   6.7e-38   6.7e-35       3     137 .]      20     170 ..      18     170 .. 0.95

  Alignments for each domain:
  == domain 1  score: 120.6 bits;  conditional E-value: 6.7e-38
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG......B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke......qeleslrkeigvlpqepqlfpeltvren..............es 81 
                 +++l++ +ge+++++G++GaGKS+Ll++l  l+ p +G++ + g++++       + +++lr+++g+++q+ +l+p+ltv++n              ++
  CTQ27278.1  20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGSLSIAGNQFDFtrapsdKAIRELRQNVGMVFQQYNLWPHLTVQQNlieapcrvlglskdQA 118
                 899*************************************9999999888899999*************************************987777 PP

                 HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  +++ek+l++l+lk   d+       +LSgGq+qrva+aral+ +p++ll+DEpta
  CTQ27278.1 119 LARAEKLLERLRLKPYSDRYP----LHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170
                 777************999988....*****************************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.3   8.7e-06    0.0087       3      22 ..      32      51 ..      31      83 .. 0.80
   2 !   29.9   0.1   4.6e-10   4.6e-07     234     297 ..     139     199 ..     112     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.7e-06
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                vl Gp g+GKS+LL+ l ll
  CTQ27278.1 32 VLLGPSGAGKSSLLRVLNLL 51
                89***************999 PP

  == domain 2  score: 29.9 bits;  conditional E-value: 4.6e-10
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 + +lS G+++  a++ al   +    +ll+DEp + L+P++++ ++ +++el+++g+  +++TH
  CTQ27278.1 139 PLHLSGGQQQRVAIARALMMEP---QVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTH 199
                 5588999999989999999999...9***********************999996666666666 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.015        15      26      42 ..      30      46 ..      18      59 .. 0.83
   2 !   21.9   0.0   9.4e-08   9.4e-05     135     209 ..     134     212 ..      66     220 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.015
                EEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlld 42
                  +++Gp G+GKs+ll 
  CTQ27278.1 30 TLVLLGPSGAGKSSLLR 46
                45789*********986 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 9.4e-08
                 T......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEE CS
                 x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklv 209
                         LSgG+++ va+a      +++p+ l l+De  aaLD + +++++++++e  ++  +Q+iv+   e   + a+++v
  CTQ27278.1 134 YsdryplHLSGGQQQRVAIARA---LMMEPQVL-LFDEPTAALDPEITAQIVSIIRELAETgiTQVIVTHEVEVARKTASRVV 212
                 35566668*******9999976...56778765.89********************999988789888654444444445444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0017       1.7      13      46 ..      14      51 ..      11      82 .. 0.81
   2 !   13.0   0.1   6.1e-05      0.06     324     362 ..     160     198 ..     143     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0017
      AAA_15 13 slkd.veidlsee...ltvliGkNnsGKSsilealdlF 46
                +++  ++i l+     + vl G+ ++GKSs+l++l+l+
  CTQ27278.1 14 AHQAlFDITLDCPqgeTLVLLGPSGAGKSSLLRVLNLL 51
                5555566666665666889****************987 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 6.1e-05
      AAA_15 324 nvilliEEPEahLHpqaqkvlikllkelandnktQviit 362
                 + +ll++EP a L p+   +++  ++ela+++ tQvi+t
  CTQ27278.1 160 PQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVT 198
                 5799*********************************98 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.5e-07   0.00035      98     121 ..      27      50 ..       4     108 .. 0.77
   2 ?   -2.9   0.0       5.5   5.5e+03      39      60 ..     184     205 ..     170     222 .. 0.60

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.5e-07
                  TTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallp 121
                  +++t vl+G+SG+GKS+L+ +l+ 
   CTQ27278.1  27 QGETLVLLGPSGAGKSSLLRVLNL 50 
                  459****************99875 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.5
                  HHHHHHTT-EEEEEEE-GGG-- CS
  RsgA_GTPase  39 LvlaeekgiepvivlnKiDlle 60 
                  + ++ e+gi+ viv   ++++ 
   CTQ27278.1 184 IRELAETGITQVIVTHEVEVAR 205
                  4445555666666555555544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   5.7e-07   0.00056      22      67 ..      26      81 ..      14     211 .. 0.55

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 5.7e-07
      AAA_16 22 grpelvllsGesGvGKsslvrellr.alekdggiflrgkcdqlesa.........i 67
                +++e ++l G+sG GKssl+r l   ++ ++g + ++g+  ++++a         +
  CTQ27278.1 26 PQGETLVLLGPSGAGKSSLLRVLNLlEMPRSGSLSIAGNQFDFTRApsdkairelR 81
                45589***************877722455555555777777774442333333320 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.047        47      22      54 ..      34      67 ..      29     133 .. 0.61
   2 !   13.2   0.0   2.6e-05     0.026     525     580 ..     158     210 ..     149     237 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.047
      AAA_13 22 YGwNGaGKTtLSrllrslelgetepkfang.sie 54
                 G  GaGK++L r+l+ le  +  +   +g ++ 
  CTQ27278.1 34 LGPSGAGKSSLLRVLNLLEMPRSGSLSIAGnQFD 67
                5888*************98655433322222443 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.6e-05
      AAA_13 525 gkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580
                  + ++  +D P   LD ++   ++s i++ +  ++ + Q+++ TH +e  ++   +
  CTQ27278.1 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELA--ETGITQVIV-THEVEVARKTASR 210
                 47899*************************9..9*****976.*****99987765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.1e-06    0.0061       1      40 [.       2      49 ..       2      65 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.1e-06
      AAA_23  1 kLkienfrsf....rd.qeidF...skgltlItGpNGaGKTTildAik 40
                ++k++++++f    +  ++i +        ++ Gp GaGK+++l+ + 
  CTQ27278.1  2 SIKLNGINCFygahQAlFDITLdcpQGETLVLLGPSGAGKSSLLRVLN 49
                699*******7654222446667665567899************9876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.1e-06     0.008      22      48 ..      27      54 ..      12      64 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.1e-06
      AAA_29 22 kg.atlltGpsGsGKSTllDAiqalLvp 48
                +g + +l GpsG+GKS+ll  ++ l +p
  CTQ27278.1 27 QGeTLVLLGPSGAGKSSLLRVLNLLEMP 54
                4558889***********9666665555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   9.2e-05     0.092       8      59 ..      31      83 ..      27     206 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.2e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee.........................erpevvfvtlpsstsskdllre 59
                lv+ G+sG+GK+ llr l      +                              +                    +
  CTQ27278.1 31 LVLLGPSGAGKSSLLRVLNLLEMPR----SgslsiagnqfdftrapsdkairelrQ--------------------N 83
                899************9887765332....123345344444444433333333332....................3 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.1e-05     0.051      20      77 ..      30      95 ..      22     199 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.1e-05
      AAA_30 20 vavltGpAGtGKttalkalreaweaa.g.......grviglAptgkaAkvLaeelgieastiakll 77
                + vl Gp G+GK+ +l++l+ +   + g       +  +  Ap+ ka ++L++++g+  +  + + 
  CTQ27278.1 30 TLVLLGPSGAGKSSLLRVLNLLEMPRsGslsiagnQFDFTRAPSDKAIRELRQNVGMVFQQYNLWP 95
                67999**************77665554577777642234679999999999999997444444333 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.92   9.2e+02     243     265 ..      26      49 ..      23      50 .. 0.78
   2 ?    8.7   0.1   0.00065      0.65     324     413 ..     143     216 ..     140     227 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.92
                 -SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 243 pkG.vtlIvGggfhGKsTLLeAle 265
                 p+G   ++ G+   GKs LL+ l+
  CTQ27278.1  26 PQGeTLVLLGPSGAGKSSLLRVLN 49 
                 7774456689999*******9875 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00065
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEET CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmee 413
                 SG   q ++i++al ++ ++lL+DE t+A           e++         +v+ +rel +++g++ ++v+  ++   + A +v++me+
  CTQ27278.1 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDP--------EIT-------AQIVSIIREL-AETGITQVIVTHEVEVARKTASRVVYMEN 216
                 89999999999999999999999999999532........222.......2345667777.67777777777777777777777777776 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     9e-05      0.09       2      42 ..      31      78 ..      30     128 .. 0.84
   2 ?   -2.3   0.0       4.7   4.6e+03      15      40 ..     183     211 ..     176     220 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9e-05
                EEEEESTTSSHHHHHHHHH.......TSTEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1  2 vaivGrpNvGKStLinalt.......gekaivsdkpgtTrdinegrvk 42
                 +++G + +GKS+L++ l        g+ +i++++   Tr +  + ++
  CTQ27278.1 31 LVLLGPSGAGKSSLLRVLNllemprsGSLSIAGNQFDFTRAPSDKAIR 78
                5799************99645555445689999999999999888776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.7
                 HHHHHHTS...TEEESSSTTSSSSEEEEE CS
    MMR_HSR1  15 Linaltge...kaivsdkpgtTrdinegr 40 
                 +i+ l ++   ++iv+++  + r++  + 
  CTQ27278.1 183 IIRELAETgitQVIVTHEVEVARKTASRV 211
                 45555543333556666666666555554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0011         1       2      24 ..      32      53 ..      31     109 .. 0.71
   2 ?    0.4   0.1      0.88   8.8e+02     102     117 ..     121     136 ..     118     142 .. 0.86
   3 ?   -2.1   0.0       5.3   5.2e+03      70      90 ..     212     231 ..     171     237 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
      AAA_18  2 lltGtpGvGKttlakeLskrlgf 24
                +l G++G+GK++l + L+  l++
  CTQ27278.1 32 VLLGPSGAGKSSLLRVLNL-LEM 53
                589*************943.344 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.88
      AAA_18 102 speelleRlekRgyee 117
                 + e+lleRl+   y++
  CTQ27278.1 121 RAEKLLERLRLKPYSD 136
                 6799******999987 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 5.3
      AAA_18  70 aleegknlvidghlaelesea 90 
                  ++e+++ ++++  a ++ + 
  CTQ27278.1 212 VYMENGH-IVEQGDASCFTHP 231
                 3445555.6777777666665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0011       1.1      47      63 ..      28      44 ..      23      54 .. 0.87
   2 ?    1.1   0.0      0.28   2.8e+02      97     152 ..     148     204 ..     136     208 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
   IstB_IS21 47 kenivllGpsGvGKshl 63
                 e +vllGpsG+GKs l
  CTQ27278.1 28 GETLVLLGPSGAGKSSL 44
                6899***********87 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.28
   IstB_IS21  97 gklaralkrllkvdllilDdlgllpldqaeaellfeviekryer..rsiiitsnlpfa 152
                 +++a a + ++++++l+ D+  +  ld + ++++  +i +  e+  + +i+t ++++a
  CTQ27278.1 148 QRVAIARALMMEPQVLLFDEP-TAALDPEITAQIVSIIRELAETgiTQVIVTHEVEVA 204
                 455555556677899999996.578999999999999999888733567888777765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00035      0.35       4      48 ..      30      76 ..      27     118 .. 0.78
   2 ?   -0.8   0.1       1.1   1.1e+03     108     132 ..     177     202 ..     174     224 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00035
      AAA_24  4 kiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie.....s 48
                 +++ Gpsg+GK++l++ l  + l +   ++l s+ +++f+  +     +
  CTQ27278.1 30 TLVLLGPSGAGKSSLLRVL--NLLEMPRSGSL-SIAGNQFDFTRapsdkA 76
                589*************999..88888887655.88888887666554443 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
      AAA_24 108 aeefrrllkklqelrk.nvifiahek 132
                 +++++++++ l e++  +vi++ + +
  CTQ27278.1 177 TAQIVSIIRELAETGItQVIVTHEVE 202
                 67788889999999985565555444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0019       1.9      31      50 ..      26      45 ..      21      53 .. 0.89
   2 ?    1.7   0.0      0.16   1.6e+02     126     188 ..     176     199 ..     100     203 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0019
      AAA_25 31 pagelallaGapgtGKttla 50
                p ge+ +l G++g+GK+ l+
  CTQ27278.1 26 PQGETLVLLGPSGAGKSSLL 45
                899**************997 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.16
      AAA_25 126 ltadvdaleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                 +t                                      +++v+ ++++ ++tg++ ++v H
  CTQ27278.1 176 IT--------------------------------------AQIVSIIREL-AETGITQVIVTH 199
                 23......................................6666666666.466766666666 PP

>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00025      0.25       3      22 ..      29      48 ..      27      77 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
                   SEEEEESTTTSSHHHHHHHH CS
  Guanylate_kin  3 rpvvlvgpsgaGksslkkaL 22
                    ++vl+gpsgaGkssl   L
     CTQ27278.1 29 ETLVLLGPSGAGKSSLLRVL 48
                   799************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 1809.69
//
Query:       CTQ27279.1  [L=171]
Description: putative exported protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-22   78.2   0.0    7.6e-22   78.0   0.0    1.1  1  DUF3828   Protein of unknown function (DUF3828)


Domain annotation for each model (and alignments):
>> DUF3828  Protein of unknown function (DUF3828)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.0   4.3e-26   7.6e-22       1     121 [.      40     154 ..      40     155 .. 0.93

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 4.3e-26
     DUF3828   1 dpeqtvkqfYqqyvqtfteivkqeatamreyiskellkrlksakiqqegeqevldaDpfsyaQda.eddwvasvkvrpakadsgkavvdvslgqqeeea 98 
                 +p+ ++++fY+  +q +t+    + +a r+y+s+ l+++l+ + +q +++ ++l+a pfs+  +  ++++vas++++p ++d+++++++v+l +q+++ 
  CTQ27279.1  40 GPDDVAQKFYDTQIQNRTQ----DPAALRPYLSDGLAQLLN-DARQDPANSKLLQANPFSSSSTPaDSAVVASASTIP-NRDARNIPLRVDL-KQGTQS 131
                 58999************97....6777**************.8899999**********99877747778********.*************.****** PP

     DUF3828  99 veltVllkkengkWkIddvrdlt 121
                 ++++Vl+++e+++W +ddvr+l+
  CTQ27279.1 132 WKDEVLMIQEGQCWAVDDVRYLG 154
                 *********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1302.06
//
Query:       CTQ27280.1  [L=11]
Description: hypothetical protein CH1034_170034 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (11 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        32  (0.00178482); expected 358.6 (0.02)
Passed bias filter:                       14  (0.000780858); expected 358.6 (0.02)
Passed Vit filter:                         0  (0); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 91.09
//
Query:       CTQ27281.1  [L=59]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 445.69
//
Query:       CTQ27282.1  [L=379]
Description: Diguanylate cyclase (GGDEF) domain-containing protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-67  227.1  24.3    2.1e-67  226.7  24.3    1.2  1  MASE5     Membrane-associated sensor
    1.4e-50  171.2   0.0    2.5e-50  170.4   0.0    1.4  1  GGDEF     Diguanylate cyclase, GGDEF domain
     0.0014   18.9   0.3     0.0037   17.5   0.2    1.8  1  GGDEF_2   GGDEF-like domain
  ------ inclusion threshold ------
        0.8    9.7   7.9         14    5.7   2.3    3.1  4  DUF3290   Protein of unknown function (DUF3290)


Domain annotation for each model (and alignments):
>> MASE5  Membrane-associated sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.7  24.3   4.8e-71   2.1e-67       1     191 [.      30     219 ..      30     220 .. 0.97

  Alignments for each domain:
  == domain 1  score: 226.7 bits;  conditional E-value: 4.8e-71
       MASE5   1 kslkWlafvnlsfllaiflrnllfvefdarllverslltlieaaliallllsllllalalilsrqpealslslllvlllllsllWallgyylltseaql 99 
                 +s++Wlafvn++f+l+if+rn++f++fd+rll++r+++++ieaalia++++s++l+++al     +   +l+++++lll+lsl+W+l++y++++++ +l
  CTQ27282.1  30 MSMPWLAFVNIAFALMIFFRNFIFTYFDKRLLTHRAVIPYIEAALIAVIIISAILVIIALTPRLAQGRYTLNIITGLLLALSLCWSLSNYCFIFFW-TL 127
                 69******************************************************77777777777778**************************.** PP

       MASE5 100 plvepLldiLlltaliALYpevrlllafvlPllltslvarvllkpeieiffllavvilllilltgrrvLlrWFeeAvrreqenqlLikrldr 191
                 p+++pLl+iL++t l+ALY+++++++af+lPl++t+l+a+++l++++ei+fl++++i+++ill+grr+L+rW++eA++++qen++Li+rl++
  CTQ27282.1 128 PFAWPLLVILMTTGLTALYHHWPGITAFMLPLWVTALLAGIQLHYHTEIRFLILWAIFTAILLYGRRILQRWYDEAWDTHQENMQLIQRLES 219
                 ******************************************************************************************97 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.4   0.0   5.6e-54   2.5e-50       1     161 []     221     376 ..     221     376 .. 0.98

  Alignments for each domain:
  == domain 1  score: 170.4 bits;  conditional E-value: 5.6e-54
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-T.TSEEEEESSSEEEEEEECSSHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrk.sdlvaRlggdeFaillpetsseeaae 98 
                 a+ D+lTg +NRr+l+ +l+  +q+     ++la++++d+d+Fk++nd+yGh++GDe+L++va+ L+ ++r  +dlvaR+gg+eF+++lp +s+++a +
  CTQ27282.1 221 ANQDALTGTANRRALNAYLAAIWQQK----TPLALMMIDVDYFKRYNDRYGHQAGDECLSSVAQVLKMAVRAeGDLVARYGGEEFVVVLPGVSLAHATA 315
                 689********************998....68***************************************99************************** PP

                 HHHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSSC CS
       GGDEF  99 laerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrnr 161
                 +aeri++++++   p+++s+ + +vt+siGi+++  + +  +e+l+ +Ad+aly+aK++grn+
  CTQ27282.1 316 IAERIQQKIREAGLPHAASAVASEVTVSIGIVAS--DGTVPIETLIARADSALYQAKNKGRNQ 376
                 **********************************..5************************97 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   8.3e-07    0.0037      20      93 ..     246     344 ..     227     350 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8.3e-07
     GGDEF_2  20 dgpyvvvviel...........eedaerllraleealral...gpdalvavrgdrlvlllpaedeedaeallerlarrlgg...........lsvriGi 93 
                 + p + ++i++           +++++++l+ ++++l+ +     d ++   g+++v++lp+ + ++a a++er+++++++            +v++ i
  CTQ27282.1 246 KTPLALMMIDVdyfkryndrygHQAGDECLSSVAQVLKMAvraEGDLVARYGGEEFVVVLPGVSLAHATAIAERIQQKIREaglphaasavaSEVTVSI 344
                 556666667767777776555523445555555555543334135666666777**********************99999777755555554444444 PP

>> DUF3290  Protein of unknown function (DUF3290)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.73   3.3e+03      21      41 ..      39      59 ..      24      62 .. 0.58
   2 ?    5.7   2.3    0.0031        14       9      68 ..      61     119 ..      53     122 .. 0.83
   3 ?    5.6   0.0    0.0032        15      23      93 ..     153     225 ..     145     230 .. 0.80
   4 ?   -1.6   0.0      0.55   2.5e+03      85     123 ..     333     371 ..     310     379 .] 0.74

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.73
     DUF3290 21 ililvlllllivvlilylrnr 41
                 + ++l++++  +++ y+ +r
  CTQ27282.1 39 NIAFALMIFFRNFIFTYFDKR 59
                344455555555666666665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0031
     DUF3290   9 qsqqslndllryililvlllllivvlilylrnrldtkyRdLsiilllllllllgiqysdy 68 
                  ++ ++  +++ +li v+++  i+v+i    +  + +y  L ii+ lll+l l   +s+y
  CTQ27282.1  61 LTHRAVIPYIEAALIAVIIISAILVIIALTPRLAQGRY-TLNIITGLLLALSLCWSLSNY 119
                 56667777889999999888888888888888888899.6************99999998 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0032
     DUF3290  23 ilvlllllivvlilylrnrldtkyRdLsiilllllllllgiqysd..yqqsqsassqssqmvsfiksvAkekk 93 
                 + ++l l + +l+  ++  ++t  R L++ ++++++ll g ++ +  y +   ++++  q+++ ++s+A++  
  CTQ27282.1 153 TAFMLPLWVTALLAGIQLHYHTEIRFLILWAIFTAILLYGRRILQrwYDEAWDTHQENMQLIQRLESIANQDA 225
                 4556666666666677777888889999999999999999888544499999*****************9875 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.55
     DUF3290  85 iksvAkekkvkkedvlvnstslkdglivkidkkyYrvtl 123
                    vA e +v+   v+   t   + li ++d+  Y+ + 
  CTQ27282.1 333 ASAVASEVTVSIGIVASDGTVPIETLIARADSALYQAKN 371
                 567888888888888888888888888888888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1123  (0.062636); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 2754.74
//
Query:       CTQ27283.1  [L=24]
Description: hypothetical protein CH1034_170037 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (24 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        44  (0.00245412); expected 358.6 (0.02)
Passed bias filter:                       41  (0.0022868); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.21s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 208.74
//
Query:       CTQ27284.1  [L=276]
Description: putative cell wall amidase and lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-25   90.1   0.2    3.4e-25   88.9   0.1    1.6  2  Amidase_2     N-acetylmuramoyl-L-alanine amidase
     0.0095   16.1   0.0      0.021   15.0   0.0    1.5  1  PG_binding_1  Putative peptidoglycan binding domain


Domain annotation for each model (and alignments):
>> Amidase_2  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.1   3.8e-29   3.4e-25       3     126 .]      42     179 ..      40     179 .. 0.91
   2 ?   -2.3   0.0      0.67     6e+03      82      96 ..     253     267 ..     227     274 .. 0.67

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 3.8e-29
                 ESEEEEEEEEBSS.-HHHHHHHHHHSHHHHTTTS.S-SEEE-SS.......SSEEESS-TTCEESSSSS......EHCHHGEEEEEESSTTE....... CS
   Amidase_2   3 rpidfiviHhtagssaagalavaaaeyaastngsigyhylidkd.......GtiyqlvdengrawHagd......kggNdnsigIElvgngd....... 81 
                  +i+ +viH+ta  +++ +la++++++       +++hyli ++        +i+qlv+e++ awHag       + +Nd+sigIEl+++g        
  CTQ27284.1  42 PRIKVLVIHYTAD-NFDVSLATLTDKE-------VSSHYLIPEQppryqhkPRIWQLVPEEDLAWHAGVsywrgsTRINDTSIGIELENRGWqktagvk 132
                 5799*******98.6888888877754.......479****888666666666*************************************99******* PP

                 EESCHHHHHHHHHHHHHHHHHHHHTEEEGGGEEEHHHH...TB-TTCT CS
   Amidase_2  82 gkeppteaqyealakLvaallkrygippdrrvvgHsdi...rktdPgp 126
                 + +p+ ++q++al+ L++++++ry+i p++ vv+H+di   rk+dPgp
  CTQ27284.1 133 SFTPFHPEQIAALIPLARDIIARYHIAPQN-VVAHADIapqRKDDPGP 179
                 ***************************988.****999999******7 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.67
                 EESCHHHHHHHHHHH CS
   Amidase_2  82 gkeppteaqyealak 96 
                  ++ + +aq ea+a+
  CTQ27284.1 253 RWDGVADAQTEAIAE 267
                 566667777777665 PP

>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.3e-06     0.021      11      55 ..     221     264 ..     216     265 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.3e-06
                   HHHHTT--.SSSSSB--HHHHHHHHHHHHHTTST.-SSSBSHHHHH CS
  PG_binding_1  11 yLsrlGylsgpadgtfgpateeaVkefQqffgLp.vtGildpaTla 55 
                    Lsr+Gy          ++ ++ + +fQ++f+ +  +G++d++T a
    CTQ27284.1 221 LLSRYGYQ--VTPEMTPAQKKRVIIAFQMHFRPQrWDGVADAQTEA 264
                   69999994..334777788899**********************66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2083.57
//
Query:       CTQ27285.1  [L=337]
Description: putative NAD(P)H-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-25   88.3   0.0    7.6e-25   87.8   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
    8.4e-18   64.3   0.0    1.1e-17   64.0   0.0    1.1  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
    1.9e-09   37.0   0.0    2.7e-09   36.5   0.0    1.2  1  RmlD_sub_bind   RmlD substrate binding domain
    1.6e-08   34.3   0.0    4.3e-08   32.9   0.0    1.7  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
      6e-08   32.8   0.0    8.7e-08   32.3   0.0    1.2  1  NAD_binding_10  NAD(P)H-binding
      7e-07   28.9   0.0    1.1e-06   28.3   0.0    1.3  1  adh_short       short chain dehydrogenase
    6.6e-06   25.5   0.0    1.4e-05   24.4   0.0    1.7  1  NAD_binding_4   Male sterility protein
  ------ inclusion threshold ------
       0.02   14.5   0.1      0.047   13.2   0.0    1.7  2  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
      0.025   14.2   0.0      0.037   13.6   0.0    1.3  1  NmrA            NmrA-like family
      0.077   13.0   0.0       0.12   12.3   0.0    1.4  1  ADH_zinc_N      Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0   4.3e-28   7.6e-25       1     228 [.       3     221 ..       3     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 4.3e-28
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnll 99 
                 +lVtGat  +G++ v++l +kg+ v +  r++  ++  ++  +e++ +dlt+ ++ ++ +   ++d+  h+   ++    + ++++f  +n++ t++l 
  CTQ27285.1   3 VLVTGATSGLGRNAVEYLRNKGISVRATGRNEAMGKLLSKMGAEFIPADLTELVSSQAKVMLAGIDTLWHC---SSFTSPWGTQQAFDLANVRATRRLG 98 
                 79*****************************999998888888***********988888889********...4444444455566678********* PP

                 HHHHHHTCTEEEEEEEGGGGTSCSSS.SBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH.T-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHTT CS
   Epimerase 100 eaarkagvkrllflsSsevYGkdaeq.pkeettltgplkpnspYaaaKlageklveayaaqy.glnaiilrlfnlyGprngegevsrvipalirkileg 196
                 e++ + gv++++++sS ++Y + ++    +e+    p +  + +a++K+a+e+++  +a+++  ++++ilr+ +l+Gp+     ++ +ip+l++ +++ 
  CTQ27285.1  99 EWSVAWGVRNFVHISSPSLYFDYHHHrDIQEDF--RPHRFANEFARSKAASEEVINLLAQANpHTRFTILRPQSLFGPH-----DKVFIPRLAQMMQHY 190
                 ************************952344444..58899**********************9****************.....**************9 PP

                 SSSEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 197 kqevtllgdgtalRdflyveDvaeaillvleh 228
                   +v+l   g+al d  y e ++ a++l+ + 
  CTQ27285.1 191 G-SVLLPRGGSALVDMTYYENAVHAMWLASQS 221
                 9.**************************9987 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   5.9e-21   1.1e-17       1     272 [.       4     257 ..       4     264 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 5.9e-21
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtd..kdkleealegvdvvihlaslvdvagkltedeimkvnvkGTr 97 
                 +vtG++  lGr+ v+ L + +    vr+   +e   +   lsk++ + +i +D+t+   ++ +  l g+d + h  s +   g  t++ ++ +nv+ Tr
  CTQ27285.1   4 LVTGATSGLGRNAVEYLRNKG--ISVRATGRNEAMGK--LLSKMGAE-FIPADLTElvSSQAKVMLAGIDTLWHCSSFTSPWG--TQQAFDLANVRATR 95 
                 699999999999999886666..68888776655554..88999988.******984457888899************99999..677789******** PP

   3Beta_HSD  98 nvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkllvpllkql 196
                  + e  v  gvr +v+ Ss +  ++ ++  +i+    e  +++ + + +++sKa +E+++    +    n+ + +T+ LRp+ ++G+ dk++ p+l q+
  CTQ27285.1  96 RLGEWSVAWGVRNFVHISSPSLYFDYHHHRDIQ----EDFRPHRFANEFARSKAASEEVINLLAQ---ANPHTRFTI-LRPQSLFGPHDKVFIPRLAQM 186
                 *************************99999999....55678899**************966555...688766675.********************* PP

   3Beta_HSD 197 aklglalfkigdeevlsdrvYvgNvawahilAaralqdpkkkssvagqayfisddsPvesyddfnltllkelglel 272
                 +++  +++     ++l+d++Y +N ++a  lA++   d       + +a+ is+ +P +    ++ +l+ elg++ 
  CTQ27285.1 187 MQHYGSVLLPRGGSALVDMTYYENAVHAMWLASQSACDH----LPSARAWNISNGEPRT-LRSIVQKLIDELGIKC 257
                 ***********************************9999....44567899******99.99*********99975 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   1.5e-12   2.7e-09       1     168 [.       1     188 [.       1     195 [. 0.88

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.5e-12
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre...............eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaea 81 
                    mk+lvtGa+  lG++ ++ l+++g++v a++r+                +dlt+  + ++ +  a  d + ++  +t      +  ++   +n++a
     CTQ27285.1   1 MKVLVTGATSGLGRNAVEYLRNKGISVRATGRNeamgkllskmgaefiPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDL---ANVRA 93 
                    89******************************9**********************************************998776665...59*** PP

                    HHHHHHHHHHCT-.EEEEEEEG.GGS-S-TTS-B-TTS---.-SSHHHHHHHHHHHHHHH.....H-SSEEEEEE-SEESSSSS-HHHHHHHHHH CS
  RmlD_sub_bind  82 vealAeaaaavga.lLihvStD.yVFdGekkrpYeeddets.PlnvYGrtKlaGEqavla.....agkkalivRtswvygekgknfvktmlrlak 168
                    +++l e+  a g+  ++h+S+    Fd +++r  +ed +++   n ++r+K+a E++++       + +++i+R   ++g ++k f+ ++ ++ +
     CTQ27285.1  94 TRRLGEWSVAWGVrNFVHISSPsLYFDYHHHRDIQEDFRPHrFANEFARSKAASEEVINLlaqanPHTRFTILRPQSLFGPHDKVFIPRLAQMMQ 188
                    ************945****9961569******9998876651689***********99754443345699***************9988877655 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   2.4e-11   4.3e-08       1     331 [.       4     324 ..       4     325 .. 0.74

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.4e-11
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG +   G + +e+L +kg  v  + r+++        +l ++         +++ +Dlt+  s +  +  + +d+  +    s     + + +
     CTQ27285.1   4 LVTGATSGLGRNAVEYLRNKGISVRATGRNEAM------GKLLSKM------GAEFIPADLTELVSSQAKVMLAGIDTLWHC---SSFTSPWGTQQ 84 
                    899999999***********9999877665554......3344433......35799*****98888888888888998884...44455566668 PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSS.B-TT.S-----SHHHHHHHHHHHHHHHHHHHH-.--EEEEEE-EEESTTS- CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevp.qtEt.tpfyPrsPYaaaKlyadwivvnyreayg.lfavngilfnhesprrg 189
                    ++  +nv +t rL e   a g++    f+++S+  +Y +  ++  ++E+  p +  + +a +K++++ ++    +a      ++ +     +p+  
     CTQ27285.1  85 AFDLANVRATRRLGEWSVAWGVR---NFVHISSPSLYFDYHHHRdIQEDfRPHRFANEFARSKAASEEVINLLAQANPhTRFTILRPQSLFGPHD- 176
                    8888999**********999987...7************98655456653678889***********9987776665413344455555667763. PP

                    TTSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHC.....SS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH....... CS
  GDP_Man_Dehyd 190 etfvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqq.....dkpedyviatgethsvrefvelaflelgktiewegkgeeev 280
                         + +++ +a++ +   +vl    ++a  d ++ +  v+amwl+ q+      +++ ++i++ge  ++r++v++ + elg++   +     + 
     CTQ27285.1 177 -----KVFIPRLAQMMQHYGSVLLPRGGSALVDMTYYENAVHAMWLASQSacdhlPSARAWNISNGEPRTLRSIVQKLIDELGIKCRIRSVPYPML 267
                    .....444444555666666777667799*****************99985544445789************************998887766665 PP

                    ........TTGGCCCEECGG--SS--SB-....-B-THHHHHHH----SS-HHHHHHH CS
  GDP_Man_Dehyd 281 grak...esgkvvvevdpkyfrpgevdll....lgdaskakeeLgWkpkvsfeelvre 331
                    + ++   e   ++   +p++     v +l      d+++a+ eLg++p v++++++ +
     CTQ27285.1 268 DIIArsmERFGDKTAKEPAF-THYGVSKLnfdfTLDITRAQDELGYQPVVTLDDGIVR 324
                    54431113333334444444.4455555522225899*****************9865 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   4.9e-11   8.7e-08       1     147 [.       7     172 ..       7     182 .. 0.72

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 4.9e-11
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-..CCHHHHHHTT-SEEEES-......--TCCHHHH........HH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtd..vedlaealkgadaVvsal......ggggkdeeg........ak 79 
                     GAt + Gr +v+ l ++ g++v+a  Rn++  + l ++ g+e + +d+t+  +++ +  l+g+d+ + +       g    ++++        ++
      CTQ27285.1   7 GATSGLGRNAVEYLRNK-GISVRATGRNEAMGKLL-SKMGAEFIPADLTElvSSQAKVMLAGIDTLWHCSsftspwG----TQQAfdlanvraTR 95 
                     9****************.5**********999955.68***********953345555569****988884543332....333344445566** PP

                     HHHHHHHHCT--EEEEEEETTTTSGCGCH..HHH.HHH.HCCHHHHHHHHHHHHHH.....HHSSSEEEEEEE-CEE CS
  NAD_binding_10  80 nivdaakeagvkRfvlvsaigvgdevpge..fge.wnk.ellkaylaakraaeell.....rasgldwTivrpggLt 147
                     ++ +   + gv+ fv +s+   + + +++   +e +   ++ ++ ++ k+a+ee++      + +  +Ti+rp  L 
      CTQ27285.1  96 RLGEWSVAWGVRNFVHISSPSLYFDYHHHrdIQEdFRPhRFANEFARSKAASEEVInllaqANPHTRFTILRPQSLF 172
                     *******************999864333211222122214555666777777777534443337999******9985 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   6.1e-10   1.1e-06       3      88 ..       3      78 ..       1     111 [. 0.79

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 6.1e-10
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.t 88
                vlvtGa+sG+Gr+ ++ l ++G++v +++r+e+   +++++++     a +i++D+t     e + ++a+  l ++d L ++ +  +
  CTQ27285.1  3 VLVTGATSGLGRNAVEYLRNKGISVRATGRNEAM-GKLLSKMG-----AEFIPADLT-----ELVSSQAKVMLAGIDTLWHCSSFtS 78
                9******************************775.59999999.....57******9.....5667777778888888888877743 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     8e-09   1.4e-05      77     208 ..      56     173 ..       5     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 8e-09
                    -HHHHHHHHHH--EEEE--SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE..GGGTTS-TTT--SSS-H......HHH--EEEETT CS
  NAD_binding_4  77 seedlqelaeevdviihsaAtvnfdepykellrvNveGtrevlelakklkklkvllhvST..ayvngeregeveekvyeegekeekldederaklk 170
                     +++++ + + +d  +h+   ++  ++ + +  +Nv++tr++ e++ +      ++h+S+   y++ ++++                d +e  + +
     CTQ27285.1  56 VSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWSVAWGVR-NFVHISSpsLYFDYHHHR----------------DIQEDFRPH 134
                    56777888999************************************99888.9******96666666664................446667889 PP

                    TCCCHHHHHHHHHHHHHHHHHHH.H---EEEEEE-EEE- CS
  NAD_binding_4 171 glpntYeqsKalaEklvrearrr.sglpvvivRpsiitg 208
                     ++n++ +sKa++E++++  ++   + +++i+Rp  + g
     CTQ27285.1 135 RFANEFARSKAASEEVINLLAQAnPHTRFTILRPQSLFG 173
                    9***************9976643145668*****98877 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.6e-05     0.047       1      80 [.       7      77 ..       7     103 .. 0.79
   2 ?   -2.8   0.0       2.1   3.8e+03     108     131 ..     185     210 ..     183     218 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.6e-05
                  TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE----- CS
  adh_short_C2  1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagia 80
                  Ga sg+Gr +++ l ++G +v +t +ne+      +l +++gae++++D t+  + +a     +  + ++D l ++  ++
    CTQ27285.1  7 GATSGLGRNAVEYLRNKGISVRATGRNEAM----GKLLSKMGAEFIPADLTELVSSQA-----KVMLAGIDTLWHCSSFT 77
                  999**************************8....8899999********997654443.....33345566666655555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.1
                   HHHHHHHH.HCTSC.CEEEEEEEGGG CS
  adh_short_C2 108 llakaalp.lmkeg.gsivnlssvga 131
                   +++++    l+ +g +++v ++++  
    CTQ27285.1 185 QMMQHYGSvLLPRGgSALVDMTYYEN 210
                   67888888777777456889999854 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     2e-05     0.037       1      54 [.       3      54 ..       3      93 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT- CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdldd 54
                +lv+GaT  +G+  v++l ++g +vra  R++     k l++ G+e++ +dl +
  CTQ27285.1  3 VLVTGATSGLGRNAVEYLRNKGISVRATGRNEA--MGKLLSKMGAEFIPADLTE 54
                79****************************974..55679999***99999875 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.8e-05      0.12       1      65 [.      11      73 ..      11      94 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.8e-05
                HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEES CS
  ADH_zinc_N  1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfec 65
                g+G  av++++  G+ v a+ ++e   +l+ k+Ga+++    + +lv+  ++     g+d    c
  CTQ27285.1 11 GLGRNAVEYLRNKGISVRATGRNEAMGKLLSKMGAEFIPADLT-ELVSSQAKVM-LAGIDTLWHC 73
                89********************************998876622.3433333333.2366665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2530.03
//
Query:       CTQ27286.1  [L=480]
Description: conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-15   57.6   0.1    2.6e-15   56.8   0.1    1.4  1  NAD_binding_10  NAD(P)H-binding
    8.4e-15   55.4   0.1    1.6e-14   54.5   0.1    1.4  1  DUF2867         Protein of unknown function (DUF2867)
    1.8e-10   40.7   0.0    3.1e-10   39.9   0.0    1.4  1  Epimerase       NAD dependent epimerase/dehydratase family
    2.2e-08   34.0   0.0    3.1e-08   33.5   0.0    1.2  1  NmrA            NmrA-like family
     0.0013   17.8   0.0      0.002   17.2   0.0    1.2  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
     0.0031   17.0   0.0     0.0053   16.2   0.0    1.4  1  adh_short       short chain dehydrogenase
  ------ inclusion threshold ------
      0.018   14.1   0.0      0.031   13.4   0.0    1.3  1  RmlD_sub_bind   RmlD substrate binding domain
      0.021   14.2   0.0      0.033   13.6   0.0    1.3  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
      0.037   14.4   0.2       0.11   12.9   0.1    1.8  2  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
       0.11   12.4   0.0       0.19   11.7   0.0    1.5  1  PAC2            PAC2 family
        0.2   12.2   0.2        1.9    9.1   0.0    2.6  3  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.1   1.6e-18   2.6e-15       1     147 [.       9     149 ..       9     162 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 1.6e-18
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-...--TCC.......HHHHHHHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsal...ggggk.......deegaknivdaa 85 
                     GA+G +G++lv+ l ar g++v a +R+ ++l++l+  +g++  ++d+++++dl + l+g+d+ +  +   g   +       ++++a  + da+
      CTQ27286.1   9 GASGYIGQHLVRALSAR-GYPVLAAARHIDRLQKLA-LPGVTCRSVDLNQPQDLPALLTGIDTLYYLVhgmG---EggdfiahERRVATYVRDAL 98 
                     9****************.5***************97.8************************9987774443...32458887777799999*** PP

                     HHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE CS
  NAD_binding_10  86 keagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggLt 147
                     +++ v++++++s++++  + +           ++ l+a +   +llr+sg+  T +r g + 
      CTQ27286.1  99 RQSSVRQVIFLSSLQAPAQEQ-----------SDHLRARQITGDLLRESGVPVTELRAGIIV 149
                     ***************984222...........234678888888899999999988888765 PP

>> DUF2867  Protein of unknown function (DUF2867)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.1   9.6e-18   1.6e-14      15     144 .]     332     463 ..     324     463 .. 0.83

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 9.6e-18
     DUF2867  15 vpgdapddtarevvealiggepgwvra..lwalRdrlvgllGlkrgragedardrlpldvgdaldffrveelted.......emvleegdahlefrvsv 104
                 v ++a+++ +++vv++ igge+g +    lw+ R ++  l+G + ++++    +r  l++gd++d ++v+  +e+        m+++ g   l+f +  
  CTQ27286.1 332 VATQASRQALWQVVNQ-IGGEEGYFFGnlLWKTRGAMDLLVGHRLAKGR---PQRAYLQTGDTVDSWKVIIVEEEkqltllfGMKAP-GLGRLSFTIND 425
                 445789*********9.******999899*****555555555544422...899**************888888778666666666.77777777776 PP

     DUF2867 105 veeeggsrlrvttlvkpngllGrlYmaaikPfHrlivram 144
                 +   ++++l+v++  +p+g+ G +Y++++ P H +i+r+m
  CTQ27286.1 426 KG--DRRELDVRAWWHPHGMPGLIYWLLMIPAHLFIFRGM 463
                 66..99********************************98 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.9e-13   3.1e-10       1     118 [.       5     114 ..       5     132 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.9e-13
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnll 99 
                 +lV+Ga+G+iG++lv+al ++gy v++ +r  ++ ++ +l+ ++   +dl ++++l +l+   ++d+ + l  v g +    +  dfi +  ++++ + 
  CTQ27286.1   5 VLVLGASGYIGQHLVRALSARGYPVLAAARHIDRLQKLALPGVTCRSVDLNQPQDLPALLT--GIDTLYYL--VHGMG----EGGDFIAHERRVATYVR 95 
                 79*****************************999999999999******************..9*******..55544....599************** PP

                 HHHHHHTCTEEEEEEEGGG CS
   Epimerase 100 eaarkagvkrllflsSsev 118
                 +a+r++ v++++flsS + 
  CTQ27286.1  96 DALRQSSVRQVIFLSSLQA 114
                 ****************544 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.9e-11   3.1e-08       1     139 [.       5     143 ..       5     165 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.9e-11
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG.......S-HHHHHHHHHHHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy.......skeiedgkklvdAakea 92 
                 +lv+Ga+G++G+++vral ++g++v a  R    +++++l+  Gv+  + dl++ + l ++l g d+ +  +  +         e +  + + dA  + 
  CTQ27286.1   5 VLVLGASGYIGQHLVRALSARGYPVLAAARHI--DRLQKLALPGVTCRSVDLNQPQDLPALLTGIDTLYYLVHGMgeggdfiAHERRVATYVRDALRQS 101
                 79****************************87..679*******************************9998877788666666666666677888888 PP

                 S-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEE CS
        NmrA  93 GvkhfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfv 139
                  v+++i+ s  ++  +      + +h  +     + +r++g+p t +
  CTQ27286.1 102 SVRQVIFLSSLQAPAQE-----QSDHLRARQITGDLLRESGVPVTEL 143
                 89999887776666444.....4455555555555566666665555 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-06     0.002       1     119 [.       6     114 ..       6     126 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-06
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrlee..lkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTr 97 
                 +v+G++G++G++lv++L  ++   l   r     + ++l ++l   +v+ +  +D+++ ++l + l g+d + +l     v+g+ + + +     +   
  CTQ27286.1   6 LVLGASGYIGQHLVRALSARGYpvLAAAR-----HIDRL-QKLALPGVT-CRSVDLNQPQDLPALLTGIDTLYYL-----VHGMGEGGDFIAHERRVAT 92 
                 69***************999952222233.....33333.444555666.99*******************9998.....6666666666666666677 PP

   3Beta_HSD  98 nvleacvkagvrvlvYtSsaev 119
                  v +a ++++vr +++ Ss+++
  CTQ27286.1  93 YVRDALRQSSVRQVIFLSSLQA 114
                 899****************987 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.3e-06    0.0053       2      71 ..       4      67 ..       3      95 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.3e-06
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHH CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealveka 71
                 vlv Gas+ IG+ ++++l ++G+ v++++r+ ++l+++a         +++ +vD+++ +++ al+  +
  CTQ27286.1  4 SVLVLGASGYIGQHLVRALSARGYPVLAAARHIDRLQKLALP--G----VTCRSVDLNQPQDLPALLTGI 67
                59**********************************776532..2....677788888888777777766 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.9e-05     0.031       3      47 ..       5      64 ..       3      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
                   EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHHHHHHH CS
  RmlD_sub_bind  3 ilvtGanGqlGseLakqlaeeglevlaltre...............eldltdaeavaell 47
                   +lv+Ga+G +G++L+++l+++g+ vla  r+               ++dl++++ + +ll
     CTQ27286.1  5 VLVLGASGYIGQHLVRALSARGYPVLAAARHidrlqklalpgvtcrSVDLNQPQDLPALL 64
                   89**************************99878777777777777777777777766665 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     2e-05     0.033       1      30 [.       6      35 ..       6      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEE CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrr 30
                   L+ G +G+iG++l++ L ++gy v    r+
     CTQ27286.1  6 LVLGASGYIGQHLVRALSARGYPVLAAARH 35
                   899*********************876554 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   6.9e-05      0.11       2      21 ..       5      24 ..       4      34 .. 0.88
   2 ?   -2.8   0.0         5   8.2e+03      89     114 ..     145     170 ..     141     173 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.9e-05
                    EEEETTTSHHHHHHHHHHHC CS
  Semialdhyde_dh  2 vaivGatGyvGqellrlLee 21
                    v ++Ga+Gy+Gq l+r L+ 
      CTQ27286.1  5 VLVLGASGYIGQHLVRALSA 24
                    88**************9986 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5
                     TTSEEEESSSTTTTSTTSEBE-HHHH CS
  Semialdhyde_dh  89 agvkviDlssdfRlkddavyvlpevn 114
                     ag++v   s++f +  d+vy lp + 
      CTQ27286.1 145 AGIIVGAGSAAFEVMRDMVYNLPVLT 170
                     67777777999999999999999775 PP

>> PAC2  PAC2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012      0.19      78     154 ..      84     159 ..      16     209 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
                 SCHHHHHHHHHHHHHHHTTESEEEEEEEEEESS-ES..TTS-.EEEEEESSHHHHHHHH..CT-CEEEEHHHHHHHHHH CS
        PAC2  78 ilqyeefakalldwaeelgvkevvvLggldageradvphtrpekvtgaatdeelleele..eseyggivgitglLlsaa 154
                 i++ +++a+ + d ++++ v++v+ L++l a +++++ h r  ++tg   +e+ +      e ++g+ivg+ ++ ++ +
  CTQ27286.1  84 IAHERRVATYVRDALRQSSVRQVIFLSSLQAPAQEQSDHLRARQITGDLLRESGV---PvtELRAGIIVGAGSAAFEVM 159
                 5566689999********************9999876666666665555444444...122558999999988877766 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0012       1.9       4      44 ..       7      44 ..       4      56 .. 0.85
   2 ?   -1.6   0.0       2.7   4.4e+03       3      18 ..     146     162 ..     144     165 .. 0.79
   3 ?   -1.2   0.0       1.9   3.2e+03      65      84 ..     249     268 ..     248     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0012
                   EE.TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHH CS
  F420_oxidored  4 ii.GaGnmgealasgllaagaqpheivvansrnpekaeelae 44
                   ++ ++G +g+ l++ l+a+g   + ++ a+ r+ +++++la 
     CTQ27286.1  7 VLgASGYIGQHLVRALSARG---YPVL-AAARHIDRLQKLAL 44
                   56457***************...****.77*********985 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.7
                    EEE.TTSHHHHHHHHHH CS
  F420_oxidored   3 gii.GaGnmgealasgl 18 
                    gii GaG+ ++ +++ +
     CTQ27286.1 146 GIIvGAGSAAFEVMRDM 162
                    7888****999887765 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.9
                    EEE-S-HHHHHHHHHHCGHH CS
  F420_oxidored  65 vvlavkpedveevlselakd 84 
                    ++ +v+p+ ++++++ l+ d
     CTQ27286.1 249 IITSVPPTIAKALIQGLKHD 268
                    78899999999999999554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3442.54
//
Query:       CTQ27287.1  [L=333]
Description: L-allo-threonine aldolase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-95  318.4   0.0    1.1e-94  317.0   0.0    1.6  2  Beta_elim_lyase  Beta-eliminating lyase
    3.9e-09   36.1   0.0      6e-09   35.5   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.016   14.5   0.1        0.5    9.6   0.0    2.1  2  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
      0.032   12.8   0.0       0.04   12.4   0.0    1.4  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.0   0.0   2.4e-98   1.1e-94       1     290 [.       3     282 ..       3     285 .. 0.97
   2 ?   -0.7   0.0      0.16     7e+02     224     253 ..     285     314 ..     279     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: 317.0 bits;  conditional E-value: 2.4e-98
                      E-S-GGG----HHHHHHHHCS----CCCT--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC CS
  Beta_elim_lyase   1 DLlSDsvtkgteamsdaqaaamlGdesYgedktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdetgaiaela 94 
                      DL+SD+vt++ +am +a++aa +Gd++Yg+d+tvn+L+ ++a+l+gkeaalf+p+Gt+An + l  ++qrgee+iv++ ah + +e+g++a+l+
       CTQ27287.1   3 DLRSDTVTRPGRAMLEAMMAAPVGDDVYGDDPTVNELQRYAADLAGKEAALFLPTGTQANLVGLLSHCQRGEEYIVGQGAHNYLYEAGGAAVLG 96 
                      9********************************************************************************************* PP

                      --EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTT CS
  Beta_elim_lyase  95 gvklrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsy 188
                      ++++++++ +++G + l+k++a+ik++++h+++++l+sl++T+n   G+v++ ++l+e+ a+++++++ lh+DgAR++na+++ g++++++++y
       CTQ27287.1  97 SIQPQPIDAAADGSLPLDKVAAKIKPDDIHFAPTRLLSLENTHN---GKVLPRDYLQEAWAFTRQRNLALHVDGARIFNAVVAYGCELRDIAQY 187
                      **************************999***************...*********************************************** PP

                      SSEEEEESSSTT--SS-EEEEE-HH....HHHHHHHHHHHHT---SSTHHHHH..HHHHHHHHSSTTHHHHHHHHHHHHHHHHHCT--EEECCG CS
  Beta_elim_lyase 189 vDsvtmslkKdllanvGgvlafrddeledylaerveqrkylggglrqagvlaaleagiraleeglaslerdhktaeqlaeklelvrlaiprrvy 282
                      +Ds+t++l+K+l+a+vG++l+++++    y++++v++rk++ggg+rqag+laa  ag++al++++++l++dh++a+  ae+l+++   + r  +
       CTQ27287.1 188 CDSFTICLSKGLGAPVGSLLLGSEA----YIRRAVRWRKMVGGGMRQAGILAA--AGLYALKNNVQRLQEDHDNAAWMAEQLRAIGADVTR-HD 274
                      *************************....************************..****************************99875555.55 PP

                      TTCCEEEE CS
  Beta_elim_lyase 283 tqehldyv 290
                      t++ ++ v
       CTQ27287.1 275 TNMLFVRV 282
                      88888776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.16
                      HHHHHHT---SSTHHHHH..HHHHHHHHSS CS
  Beta_elim_lyase 224 eqrkylggglrqagvlaaleagiraleegl 253
                      eq+ +lg+ ++ +gvl+   + +r +++ +
       CTQ27287.1 285 EQAPALGKFMQAQGVLINASPVVRLVTHLD 314
                      78899************9888888887754 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   1.3e-12     6e-09      38     329 ..      28     305 ..       5     324 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 1.3e-12
                    TST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSE.EEEEEBEETTTTEE-H CS
  Aminotran_1_2  38 neygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsgge.vvryplyseedfhldl 132
                      yg+     el+   a+++g        +eaa+ + +G++a+++ l   ++  +g+e +v +  +    ++  ++ +  +++ p++ ++d +l l
     CTQ27287.1  28 DVYGDDPTVNELQRYAADLAG--------KEAALFLPTGTQANLVGLLSHCQ--RGEEYIVGQGAHNYLYEAGGAAVLGsIQPQPIDAAADGSLPL 113
                    5688888899***********........999***************99998..999*9999999999888888888777**************** PP

                    HHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEET..TTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSG CS
  Aminotran_1_2 133 ealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDea..YagfvfgsldavatranveeepnllivgslsKafGla 226
                    +++ +++k +  + ++t+++ +e+ hN  G+v++++ l++  ++++++nl l vD a  + + v   ++    + +++++ +   +  lsK +G++
     CTQ27287.1 114 DKVAAKIKPDDIHFAPTRLLSLENTHN--GKVLPRDYLQEAWAFTRQRNLALHVDGAriFNAVVAYGCE----LRDIAQYCD-SFTICLSKGLGAP 202
                    *********999999************..**************************65337666666564....667777777.566679******* PP

                    GG-EEEEEE.EHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHH..... CS
  Aminotran_1_2 227 GeRvGyilg.naavvsqlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsae..... 315
                        G +l  ++a+++ + ++   +     ++  ++aa l + +    ++ ++ q+ ++++  + ++L+++g +v+  +++m+ +++++++     
     CTQ27287.1 203 V---GSLLLgSEAYIRRAVRWRKMVGGgMRQAGILAAAGLYALK----NNVQRLQEDHDNAAWMAEQLRAIGADVTRHDTNMLFVRVGEEQapalg 291
                    9...9999889999999999977755555555555555555533....55666666666777899999999*****************99955555 PP

                    CHHHHHHHHHHTCT CS
  Aminotran_1_2 316 takelskkLleevg 329
                    + ++++ +L++   
     CTQ27287.1 292 KFMQAQGVLINASP 305
                    55555555555544 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00011       0.5      18     109 ..      29     121 ..      14     125 .. 0.72
   2 ?    2.8   0.1     0.013        60     210     267 ..     219     273 ..     208     320 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00011
                      -SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHH.TTTTTT-EEEE..ESSS-THHHHHHHHTT.-EEEEE-B-TTTSSB-GGGCGGG CS
  DegT_DnrJ_EryC1  18 wltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLra.lgvgpgdeVIv..psltFvatanavlelg.akpvfvDvdpdtynidpaaieaa 107
                       +  +p+v+e+ +  a+  g++ a+ + +Gt+A++++L   ++  +g+e Iv   +++++  a  ++ lg  +p+++D   ++  +  ++++a+
       CTQ27287.1  29 VYGDDPTVNELQRYAADLAGKEAALFLPTGTQANLVGLLShCQ--RGEEYIVgqGAHNYLYEAGGAAVLGsIQPQPIDAA-ADGSLPLDKVAAK 119
                      566699*******************************987444..45666662246677666655555552467777766.5666667777777 PP

                      -- CS
  DegT_DnrJ_EryC1 108 it 109
                      i 
       CTQ27287.1 120 IK 121
                      66 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.013
                      CECCSS---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGG CS
  DegT_DnrJ_EryC1 210 yvgevelGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttp 267
                       + ++ +G  +r   i AA gl  L++  + +++ +++a+ + e+L+ ++    +t +
       CTQ27287.1 219 RWRKM-VGGGMRQAGILAAAGLYALKNNVQRLQEDHDNAAWMAEQLRAIGAD--VTRH 273
                      57777.999******************99999***************99953..2222 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     9e-06      0.04      51     105 ..      33      91 ..      29     266 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9e-06
                      -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEEEEE....STSSHHHH CS
  Cys_Met_Meta_PP  51 nptrsvleeriaaLeggeaalavssGmaAiaaailallkaGdeivvs....ddlYggtq 105
                       pt++ l++  a+L g eaal +++G+ A  + +l+ ++ G+e +v     ++lY+   
       CTQ27287.1  33 DPTVNELQRYAADLAGKEAALFLPTGTQANLVGLLSHCQRGEEYIVGqgahNYLYEAGG 91 
                      6******************************************9986111145665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2576.68
//
Query:       CTQ27288.1  [L=572]
Description: pyruvate dehydrogenase (pyruvate oxidase), thiamin-dependent, FAD-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-42  145.6   1.3    1.3e-41  142.1   0.2    2.4  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    1.1e-40  139.0   1.9    1.5e-40  138.5   0.4    2.1  3  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    3.8e-32  110.9   0.0    8.3e-32  109.8   0.0    1.6  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
  ------ inclusion threshold ------
       0.22   11.2   1.2          2    8.1   0.0    2.3  2  POR_N         Pyruvate flavodoxin/ferredoxin oxidoreductase, 


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   0.2   2.8e-45   1.3e-41       2     170 ..       4     170 ..       3     172 .. 0.98
   2 ?    2.0   0.0      0.03   1.3e+02     130     159 ..     501     525 ..     387     528 .. 0.80

  Alignments for each domain:
  == domain 1  score: 142.1 bits;  conditional E-value: 2.8e-45
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   tva++++++L+++gv+++ gv G++++ l d+l++   i+++ +rhE++aafaA + a++tg+++v++ + gpG ++++++l++++++++P+l++++
    CTQ27288.1   4 TVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNRMGTIDWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAA 100
                   89*********************************************************************************************** PP

                   E--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEEH CS
  TPP_enzyme_N  99 drptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevde 170
                   ++p+s++g g++q e++ ++lfr++ +y+e v++pe++p++l+ A+r+a   ++g+ +++lp dv l++++e
    CTQ27288.1 101 HIPSSEIGSGYFQ-ETHPQELFRECSHYCELVSTPEQIPQVLAVAMRKA-VINRGVSVVVLPGDVALKAAPE 170
                   *************.***********************************.99999***********998876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.03
                   -SSGGGHHHHHHHHHHHHHSSS--EEEEEE CS
  TPP_enzyme_N 130 vtspeelpealrrAirtalsgrpgPvylel 159
                   v++++e+     +A++ta  ++ gPv++++
    CTQ27288.1 501 VEKASEVD----EALQTA-FRTDGPVLVDV 525
                   55555555....555555.55559998876 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.6   7.1e+03      58      78 ..      78      98 ..      50      99 .. 0.56
   2 ?   -3.9   0.0       2.3     1e+04     135     151 ..     141     157 ..     124     161 .. 0.57
   3 !  138.5   0.4   3.4e-44   1.5e-40       1     153 []     379     525 ..     379     525 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.6
                  HHHTGGGHHHHHHTT-SEEEE CS
  TPP_enzyme_C 58 flmilqelatavrrnlpitvv 78
                   l+ ++ l  ++r+++p++ +
    CTQ27288.1 78 NLHLINGLFDCHRNHVPVLAI 98
                  356688888888888888765 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.3
                   HHHHHHHHHCSSSEEEE CS
  TPP_enzyme_C 135 leealkealekkgpali 151
                   l+ a+++a+ ++g++++
    CTQ27288.1 141 LAVAMRKAVINRGVSVV 157
                   34445555555566555 PP

  == domain 3  score: 138.5 bits;  conditional E-value: 3.4e-44
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   d+G+ t+waar+lk++ +r++l s  +g+m +++p AiGak+ +p+r+vva++GDGgf m + ++   ++ +lp+++v++nN+++g++ ++++  g 
    CTQ27288.1 379 DVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQAIGAKATAPERQVVAMCGDGGFSMLMGDFLSLAQMKLPVKIVIFNNSVLGFVAMEMKAGGY 475
                   89****************************************99**********************************************9998887 PP

                   CTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  98 krksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                    +  g++   l++++fa++aea+G+kg+rveka  +e++eal++a++++gp+l++v
    CTQ27288.1 476 LTD-GTE---LHDTNFARIAEACGIKGIRVEKA--SEVDEALQTAFRTDGPVLVDV 525
                   554.434...99*********************..*******************98 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   1.8e-35   8.3e-32       2     137 .]     192     319 ..     191     319 .. 0.96

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 1.8e-35
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTT CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgsep 98 
                   +k+a+l++ ++++++++G+g+a  ga++el+e+a k+++P+v+ l+gk  ++ d+p+ +gm+gl+g +++   + +aD++++lG++f       +++
    CTQ27288.1 192 RKLAQLIRYSSNIALMCGSGCA--GAHQELVEFAAKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQF-------PYR 279
                   799*******************..************************************************************999.......667 PP

                   TTTTT-.EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  99 efapea.kiihididpaeigknyqvdlaivgdvketleaL 137
                   +f p + kii+idi+p +ig + +vd+a+vgd+k tl+aL
    CTQ27288.1 280 AFYPTDaKIIQIDINPGSIGAHSKVDMALVGDIKSTLKAL 319
                   7888888*******************************98 PP

>> POR_N  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00044         2      44      93 ..      49      99 ..      34     156 .. 0.91
   2 ?    1.3   0.2     0.055   2.5e+02      49      95 ..     411     459 ..     404     466 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00044
                SSHHHHHHHHHHHHCTT-EEEEE.EECCHHHHCCCCHHHHHHTT--EEEEE CS
       POR_N 44 esEigaisaviGAaaaGaraaTa.TSgqGllLmienlglaageelPvvivv 93
                 +E++a++a + A ++G +a+ a ++g+G l  i  l+    +++Pv+ + 
  CTQ27288.1 49 HEEVAAFAAGAEAQLTGELAVCAgSCGPGNLHLINGLFDCHRNHVPVLAIA 99
                589*****************987478*****************99998765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.055
                 HHHHHHHH.HCTT-EEEEEEECCH.HHHCCCCHHHHHHTT--EEEEEEE CS
       POR_N  49 aisaviGA.aaaGaraaTaTSgqG.llLmienlglaageelPvvivvva 95 
                 a+  +iGA a+a  r ++a +g G +++ +  +   a ++lPv iv+ +
  CTQ27288.1 411 AMPQAIGAkATAPERQVVAMCGDGgFSMLMGDFLSLAQMKLPVKIVIFN 459
                 78889999556789********853777788888888899999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4350.08
//
Query:       CTQ27289.1  [L=144]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-18   67.6  12.5    1.1e-18   67.6  12.5    1.6  2  DoxX      DoxX
  ------ inclusion threshold ------
       0.21   11.2   3.3       0.39   10.3   3.3    1.4  1  PRA1      PRA1 family protein
       0.26   11.2   5.6       0.23   11.4   3.8    1.7  2  DoxD      TQO small subunit DoxD
        1.3    9.1   6.5       0.89    9.7   4.8    1.7  1  DUF3742   Protein of unknown function (DUF3742)
        6.5    6.4   8.2       0.54    9.8   2.5    2.2  2  DUF4044   Protein of unknown function (DUF4044)


Domain annotation for each model (and alignments):
>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6  12.5   2.9e-22   1.1e-18       2      83 ..      20      98 ..      19     100 .. 0.97
   2 ?   -2.1   0.1       1.7   6.1e+03      57      57 ..     125     125 ..     104     139 .. 0.62

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 2.9e-22
        DoxX  2 llllRlllgvlfiahGlqkltgfglegtaaslaalglpppellaylaalvElvgglllllGlltRlaAlalavtllvatltv 83
                 lllRl++g+l++ hG++kl + g++g++++laa gl  p + ay + ++E+v++ ll+lG+ltR aAl+la+t++va+l+v
  CTQ27289.1 20 KLLLRLAVGGLMLFHGIHKLID-GVDGISGMLAAQGL--PGFIAYGVLVGEVVAPCLLILGVLTRPAALVLAFTMVVAWLMV 98
                69*******************8.**************..*****************************************98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.7
        DoxX  57 l 57 
                 l
  CTQ27289.1 125 L 125
                 1 PP

>> PRA1  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.3   0.00011      0.39      45     105 ..      69     129 ..      67     137 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
        PRA1  45 vvllvlllslltnplslivllllvlawlflyflrseplvlfgrelsdrvvlivllvvsvll 105
                 v+ ++l+l +lt+p +l++++++v+awl++ + ++  l ++g    ++ v++++ +++++l
  CTQ27289.1  69 VAPCLLILGVLTRPAALVLAFTMVVAWLMVGLDKTFALDTVGAWAIENLVYFFVGALAIAL 129
                 55678999*********************98855555555555556666666666666665 PP

>> DoxD  TQO small subunit DoxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.28     1e+03       3      22 ..      21      40 ..      20      53 .. 0.84
   2 ?   11.4   3.8   6.4e-05      0.23      69     140 ..      63     137 ..      35     140 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.28
        DoxD  3 lilRlalgliflsagirkkv 22
                l lRla+g + l  gi k +
  CTQ27289.1 21 LLLRLAVGGLMLFHGIHKLI 40
                57999999999988888876 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 6.4e-05
        DoxD  69 vlftlvEiivGlllliGlltRlsslvafalalgialsayWlgstc...edEyqiglll..vaaelvliltgsgklsl 140
                 vl++  E+++  ll++G+ltR ++lv++ + ++  l  +   +     +  + i+ l+   +++l + l g+g++sl
  CTQ27289.1  63 VLVG--EVVAPCLLILGVLTRPAALVLAFTMVVAWLMVGLDKTFAldtVGAWAIENLVyfFVGALAIALLGAGRYSL 137
                 5567..99999**************9887777766665544444401156799998862257899999999999997 PP

>> DUF3742  Protein of unknown function (DUF3742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.8   0.00025      0.89      31      86 ..      46     102 ..      29     116 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00025
     DUF3742  31 aaswlvakGvpaavatavlw....vvklavlGvllyvafWlalllvvvvlvawaarsvdt 86 
                 ++++l+a+G+p  +a  vl+    +  l +lGvl   a   al+l++ ++vaw++   d+
  CTQ27289.1  46 ISGMLAAQGLPGFIAYGVLVgevvAPCLLILGVLTRPA---ALVLAFTMVVAWLMVGLDK 102
                 678999*****999988864331133588999998766...8************988776 PP

>> DUF4044  Protein of unknown function (DUF4044)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.5   0.00015      0.54      11      20 ..      89      98 ..      89     100 .. 0.92
   2 ?   -2.5   0.3         1   3.8e+03      24      32 ..     122     130 ..     120     131 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00015
     DUF4044 11 iTkvvvwlMl 20
                +T+vv+wlM+
  CTQ27289.1 89 FTMVVAWLMV 98
                6********8 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1
     DUF4044  24 VGSvllgal 32 
                 VG++ +++l
  CTQ27289.1 122 VGALAIALL 130
                 888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1160.48
//
Query:       CTQ27290.1  [L=322]
Description: HCP oxidoreductase, NADH-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-14   52.4   2.0    8.8e-14   51.2   2.0    1.6  1  Fer2           2Fe-2S iron-sulfur cluster binding domain
    9.6e-08   32.6   0.0    3.3e-07   30.9   0.0    1.9  1  NAD_binding_1  Oxidoreductase NAD-binding domain
      1e-07   32.2   0.0    1.9e-07   31.3   0.0    1.5  1  FAD_binding_6  Oxidoreductase FAD-binding domain
  ------ inclusion threshold ------
        0.2   11.7   0.8       0.39   10.7   0.8    1.5  1  Fer2_3         2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   2.0     2e-17   8.8e-14       8      77 ..     248     315 ..     242     316 .. 0.86

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 2e-17
                 EEEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE.CTTSSSSTHHHHHTTEEEEGGGSEE CS
        Fer2   8 vevevadgettlldaaeenggidipysCggggCgtClvevlegev.qsdetelegeeldegklrlaCqtiv 77 
                 +e+ ++ g+t llda+e+n ++++ ++C++g Cg C+++v++g++   + + l+++e ++g++ laC + +
  CTQ27290.1 248 REFYAPVGTT-LLDALESN-KVPVTVACRAGVCGCCKTKVVSGKYsVTSTMTLTDAEIADGYV-LACSCHP 315
                 5676766777.*******9.*************************744478999999999888.***9987 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   7.5e-11   3.3e-07       1     108 [.     116     211 ..     116     212 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 7.5e-11
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    ++a+G G++P++++ r +++   ++  v ++y +r+ ed+++ ee++++    p     + v  +++a+     gr++ +ll+ + +  +++  v+
     CTQ27290.1 116 LLAAGCGVTPIMAMRRWLAKY-RPQADVQVIYNVRSPEDVIFAEEWRNY----PV----TLV-AEHNATHGFVAGRLTRELLQSVPD--LASRTVM 199
                    79************9999997.999**********************99....33....334.566777767788888888888877..9****** PP

                    EECSHHHHHHHH CS
  NAD_binding_1  97 vCGppgMikavr 108
                     CGp + ++ v+
     CTQ27290.1 200 TCGPAPYMEKVE 211
                    ***988888775 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   4.3e-11   1.9e-07      28      97 ..      35     104 ..      11     106 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 4.3e-11
                    ----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHH.HCS-TT-EEEEEEEE-SE CS
  FAD_binding_6  28 lglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvypgGkmsqaL.delkigdtleikGPlGkf 97 
                      +++Gq+  ++++ +  + +R+Yt+ s++  + ++ l v+++ +G  sq L +e+k gd+l ++  +G+f
     CTQ27290.1  35 YPYRAGQYALVSVR-NSAETLRAYTLSSTPGVSEYITLTVRRIDEGTGSQWLtREVKRGDYLWLSDAMGEF 104
                    4599**********.77779********************************888******9999988888 PP

>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.8   8.8e-05      0.39      49      80 ..     270     302 ..     253     320 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.8e-05
      Fer2_3  49 rasCregiCGscav.ainGkptlaCtatikdla 80 
                    Cr+g+CG+c   ++ Gk  +  t t++d +
  CTQ27290.1 270 TVACRAGVCGCCKTkVVSGKYSVTSTMTLTDAE 302
                 678*********761578999999888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2405.46
//
Query:       CTQ27291.1  [L=550]
Description: hybrid-cluster (4Fe-2S-2O) protein in anaerobic terminal reductases [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.1e-156  519.5   0.0     1e-155  519.3   0.0    1.0  1  Prismane  Prismane/CO dehydrogenase family
  ------ inclusion threshold ------
      0.054   13.3   0.1       0.12   12.3   0.1    1.5  1  DUF3703   Protein of unknown function (DUF3703)


Domain annotation for each model (and alignments):
>> Prismane  Prismane/CO dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  519.3   0.0  1.1e-159    1e-155       1     511 []       1     545 [.       1     545 [. 0.98

  Alignments for each domain:
  == domain 1  score: 519.3 bits;  conditional E-value: 1.1e-159
                 -EE-SST.......CT-ECSCS.SS-TTS-BHHHHHHHHHHHHHHHHHHHHHHHHHHC......HHHHHHHHHCHTSTTTB-SHHHHHHHHHHHHCHHH CS
                 xxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    Prismane   1 mfCrqCe.......ngpCritknkrGvCGkdadtavardlliavlkgaaahaaharel......adtliakalfktltnvnfddekklkrlaealgiee 86 
                 mfC qCe       +++C++    +G+CGk+a+t++++dllia l+g++a+a +are       +d+++ +a f+tltnvnfd+ +++ + ++a++++e
  CTQ27291.1   1 MFCVQCEqtirtpaGNGCSYA---QGMCGKTAETSDLQDLLIASLQGLSAWALKAREYgiidhqVDSFAPRAFFSTLTNVNFDSPRIVGYARQAIALRE 96 
                 9********************...*************************************************************************** PP

                 CC........................SSHHHHHHHHCCHHHCGGGS-SSHHHHHHHCCCHHHHHHH..HHHHCHHTT-HHHHHHHHHHHCCCCTTSTHH CS
                 xx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    Prismane  87 el........................kdieelaakvaevaledlskeenedirslkellpkglkgl..yaehaivlgyadeevveflaktlaglesdpl 159
                 +l                        +d  +l++++a+++ ++ +++  e+i  l+ l+++glkg   y+eha+vlg+ d+++++ ++k++a l + p 
  CTQ27291.1  97 ALkaqclaidasaavdspvadlqlvsDDLGDLQRQAADYTPNKDKAAIGENILGLRLLCLYGLKGAaaYMEHAHVLGQYDNAIYAQYHKIMAWLGTWPA 195
                 ************************************************************************************************999 PP

                 H...HHHHHHHHHHHHHHHHHHHHHHHHHHH-----EEEEECGCG-.SSSEEEEEESS-HHHHHHHHHHHCTTCCCCCCCGCCCCCCHHHHHHHHHCCE CS
                 x...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    Prismane 160 d...llskalrlGlldlkgmelldeantslfGtPeppltevnlgvldkdkvnIlvsGHdladleelleqtegkglnvythgemLpghcctalklkyrhl 255
                 d   ll+ ++++G++++k+m +ld+ +t+ +G+P+p  t+vn+++  k+ ++Il+sGHdl+dl +lleqteg+g+nvythgemLp+h++++l  k++hl
  CTQ27291.1 196 DmnaLLECSMEIGQMNFKVMSILDAGETTKYGHPTP--TQVNVKAT-KG-KCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELR-KFKHL 289
                 8889********************************..********.99.9******************************************.***** PP

                 EEEECSSGGGHHHHHCCHECEEEESSSS--TTHHHHHHCHCCEEEEECTTB-TTSEEE--CTTCHHHHHHHHHHHHCCHCCTTCGG.-........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........... RF
    Prismane 256 vgnvGnawqqekaeftgavdaivvdtnCivpplasvaekyktrlittsevakpgakhieeeekadkdaseiiekAielakareekkve........... 343
                 +gn+G+ wq++++ef+ ++++iv++ nCi++p  +v + y +r++t s v++pg++h+e      +d+s++i++A+++a++  + ++            
  CTQ27291.1 290 IGNYGSGWQNQQVEFARFPGPIVMTSNCIIDP--TVGA-YDDRIWTRSIVGWPGVNHLE-----GEDFSPVIAQAQQMAGFPYS-EIPhlitvgfgrqt 379
                 ********************************..5455.********************.....9*****************88.4446999******* PP

                 ........HHHHHTTSS-EEEEE-B---TTCGCCHHHHHHHHCHHTTEEEEEECHHHHHCCCTTTTECGHHHHSTHCEESEEEEESCCCHHHHHHHHHH CS
                 ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    Prismane 344 ........idaiksGtIkgvvlvvGCdnakkgrdyytelakelikrdvlvltaGCakyalnklglgtieaaelagegiPrvLdvGsCvdnyrivvialk 434
                         id++ + ++++++lv+GCd+a+ +r+y+t++a+++ ++d+l+lt++C+ky++nkl++g+i       eg+Pr++d+G+C+d+y+++ +a+ 
  CTQ27291.1 380 llgaadtlIDLVSREKLRHIFLVGGCDGARGERNYFTDFATSV-PDDCLILTLACGKYRFNKLDFGDI-------EGLPRLVDAGQCNDAYSAIILAVT 470
                 *******************************************.************************.......59********************** PP

                 HHHHTTSSGGGSSEEEEECC--SHHHHHHHHHHHHTT-.CEEECSS-TTTT-HHHHHHHHCHHHHHHCEEEECHCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    Prismane 435 laealgvdindLplaalalewyeqKAvailltllalGi.nihlgptlpafgspnvlkvlvedfedriggivtveedpe 511
                 lae+lg+++ndLpl +l+l+w+eqKA++illtll+lG+ ni+ gpt p f +p +l vl+e+f  ++++++tve+d++
  CTQ27291.1 471 LAEKLGCGVNDLPL-SLVLSWFEQKAIVILLTLLSLGVkNIVTGPTAPGFFTPDLLAVLNEKF--GLRSVTTVEQDMQ 545
                 **************.************************************************..***********96 PP

>> DUF3703  Protein of unknown function (DUF3703)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.3e-05      0.12      25      61 ..     161     197 ..     158     213 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.3e-05
     DUF3703  25 kawrhLeraHilgqrslllHtrvHwamLrlalrqkdl 61 
                  a +++e+aH+lgq +     + H  m  l+    d+
  CTQ27291.1 161 GAAAYMEHAHVLGQYDNAIYAQYHKIMAWLGTWPADM 197
                 577899*********************9998766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4232.47
//
Query:       CTQ27292.1  [L=299]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-59  200.6  25.2    1.6e-58  197.4  13.8    2.0  2  Lys_export     Lysine exporter LysO
  ------ inclusion threshold ------
        1.6    8.6  15.0        1.3    8.9   2.9    3.2  3  EptA_B_N       Phosphoethanolamine transferase EptA/EptB


Domain annotation for each model (and alignments):
>> Lys_export  Lysine exporter LysO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   3.5   8.1e-05      0.73       3      72 ..      11      79 ..       5      93 .. 0.66
   2 !  197.4  13.8   1.8e-62   1.6e-58       2     189 ..     113     297 ..     112     298 .. 0.96

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 8.1e-05
  Lys_export  3 aliaGillGllllleaelleeelseylLylLlflvGislgsskelleklkklnlkllllplatilgsllg 72
                 l++G ll l +++    l +++ +++ y++lf+ Gisl+  ++l ++l  +   +++  ++++l+ +++
  CTQ27292.1 11 PLVVGYLLPLRHSSA-LKLINRMLSWIVYVILFFMGISLAFLDNLASNLLAILHYAAVSVVIILLCNIAA 79
                456666666644444.4577899******************99988886655554444444444444333 PP

  == domain 2  score: 197.4 bits;  conditional E-value: 1.8e-62
  Lys_export   2 laliaGillGllllleaelleeelseylLylLlflvGislgss.kelleklkklnlkllllplatilgsllggllaalllglslkeslavasGfGwYSL 99 
                 +++++G+llGl+ +l++ ++++e+sey L++LlflvGi+l+++ ++l+++   ln+++++++++++++sllgg+l a++lgl+lk++la+asGfGwYSL
  CTQ27292.1 113 GVVVLGFLLGLT-RLPFLQHATEASEYTLIFLLFLVGIQLRNNgMSLRQI--VLNRRGMIVAVVVTASSLLGGILNAFILGLPLKTGLAMASGFGWYSL 208
                 689********5.55566799**********************9999999..9********************************************** PP

  Lys_export 100 sgilitelkgaelGtiallanllREllalllipllakrfgklaaisvaGatsmDttLPiitkssgkevvvlaivhGvilsllvPilvslf 189
                 sgil+te  g+++G+ a++++l+RElla++lip l++r +++ a++++GatsmD+tLP++++s g e+v++aivhG++lsllvPil+++f
  CTQ27292.1 209 SGILLTESFGPVIGSAAFFNDLCRELLAIMLIPGLIRRSRST-ALGLCGATSMDFTLPVLQRSGGVEIVPAAIVHGFLLSLLVPILIAFF 297
                 *************************************98885.5********************************************98 PP

>> EptA_B_N  Phosphoethanolamine transferase EptA/EptB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.9   0.00014       1.3      72     123 ..       5      56 ..       1      59 [. 0.86
   2 ?    6.6   0.7   0.00071       6.4      65     117 ..      67     119 ..      55     140 .. 0.71
   3 ?    0.2   0.2     0.071   6.3e+02      79     111 ..     143     176 ..     136     189 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00014
                 HHHTHHHHHHHHH-EE----HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH CS
    EptA_B_N  72 lllgvlPallllrvkikrksllkellkrlalllvallvivlvallfykdyas 123
                 l++ +lP+++ ++++++++s lk + + l +++  +l+++++ l+f  ++as
  CTQ27292.1   5 LFIILLPLVVGYLLPLRHSSALKLINRMLSWIVYVILFFMGISLAFLDNLAS 56 
                 78899***************99966555599999999999******999987 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00071
                 HHHHHHHHHHTHHHHHHHHH-EE----HHHHHHHHHHHHHHHHHHHHHHHHTT CS
    EptA_B_N  65 lklllyllllgvlPallllrvkikrksllkellkrlalllvallvivlvallf 117
                 +++++ ll+  +  ++l  +++++++ ++++l +rla++l +l ++++v+l f
  CTQ27292.1  67 VSVVIILLCNIAALLWLESKMPWRSQHRQEKLPSRLAMALESLQLCGVVVLGF 119
                 3444444444444444445555688888888***********97777777654 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.071
                 HHHHHH-EE.----HHHHHHHHHHHHHHHHHHHH CS
    EptA_B_N  79 allllrvki.krksllkellkrlalllvallviv 111
                 +l+l+ +++ ++   l++++ +   ++va++v +
  CTQ27292.1 143 LLFLVGIQLrNNGMSLRQIVLNRRGMIVAVVVTA 176
                 3444444445444455554444433344444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2169.81
//
Query:       CTQ27293.1  [L=231]
Description: aquaporin [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-49  168.9  20.4    1.5e-49  168.7  20.4    1.0  1  MIP       Major intrinsic protein


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.7  20.4   8.6e-54   1.5e-49       8     227 .]       2     223 ..       1     223 [. 0.90

  Alignments for each domain:
  == domain 1  score: 168.7 bits;  conditional E-value: 8.6e-54
                 HHHHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHH CS
         MIP   8 lravlAEflatlllvfigvgsalnvkkkvsslaslvsvtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllGaiva 106
                  r++ AE+++t+ lvf g+gsa+ ++++  +l+    +++ +valafgl++ +  +++++iSG+H+NPavTl+l+ +++++++ +i Yi+aQ++G+i+a
  CTQ27293.1   2 FRKLAAECFGTFWLVFGGCGSAV-LAAAFPELG----IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKEVIGYIIAQVVGGIIA 95 
                 58999***************999.777776755....89************************************************************ PP

                 HHHHHHHCHHH.........HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHHHHHHHST-SSHHHH CS
         MIP 107 aallklltkgl.........esraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilvgipltGaamNpArs 196
                 aa+l+++ +g            + +        g s+++a+v+Ei+lt  ++lv+ ++td++  +    +ap+aigl+++li+l++ip+t +++NpArs
  CTQ27293.1  96 AAVLYVVASGKagfdaaasgF-ASNGYGEHSPGGFSMLSAIVIEIVLTCGFLLVIHGATDKHAPAG---FAPIAIGLALTLIHLISIPVTNTSVNPARS 190
                 *********998998777532.33333334566899***********************9887776...8***************************** PP

                 HHHHHHHTH..STTTTHHHHHHHHHHHHHHHHH CS
         MIP 197 lgpavvlnk..fedhwvylvGPliGailgalvY 227
                  + a+++     ++ w ++v P++G+ilg+++Y
  CTQ27293.1 191 TAVAIFQGGwaLQQLWLFWVMPIVGGILGGVLY 223
                 ******97622689****************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1808.76
//
Query:       CTQ27294.1  [L=57]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 425.92
//
Query:       CTQ27295.1  [L=552]
Description: conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.2e-151  502.9   0.2     8e-151  502.5   0.2    1.1  1  DUF2813   Protein of unknown function (DUF2813)
    3.9e-12   46.6   0.0      1e-08   35.3   0.0    2.2  2  AAA_15    AAA ATPase domain
      1e-09   38.6   0.1     0.0001   22.2   0.0    2.3  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    3.6e-06   26.6   0.0    9.4e-06   25.3   0.0    1.7  2  AAA_29    P-loop containing region of AAA domain
     0.0014   19.2   0.0     0.0023   18.5   0.0    1.3  1  AAA_23    AAA domain
     0.0023   17.4   0.0     0.0039   16.7   0.0    1.3  1  SMC_N     RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.016   15.7   0.0      0.079   13.5   0.0    2.1  1  ABC_tran  ABC transporter


Domain annotation for each model (and alignments):
>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  502.5   0.2  3.1e-154    8e-151       1     372 []       1     375 [.       1     375 [. 1.00

  Alignments for each domain:
  == domain 1  score: 502.5 bits;  conditional E-value: 3.1e-154
     DUF2813   1 myLerieisGFRGinrLSlsleentvLiGENaWGKSSLldALslilnvekelyqFtlkDFhvdeseeeeqekhlqlvltfkeeekeeekarrykklsav 99 
                 m+Ler+ei+GFRGinrLSl+le+n+vLiGENaWGKSSLldAL+l+l++e +ly+F ++DF++++ + + +e+hl+++ltf+e+e+++++ rr++ l+ +
  CTQ27295.1   1 MLLERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPEFDLYHFVRDDFWFPPGDIQGREHHLHIILTFRETEPGRHRVRRFRPLQRC 99 
                 9************************************************************************************************** PP

     DUF2813 100 wvkekdgleriyyrvsgelnedekvttersFldeegeklklddieelvkelislhPvlRlrda...rrlredtleaelkeerlerrlenllrrllskpq 195
                 wv+++dg++r++yr++gel+ed++v+t rsF+d ege l l++i+el+++l++l+PvlRlrda   rr++++t+ ++ + e ++r+l+ l r+l+s+pq
  CTQ27295.1 100 WVPCDDGYHRVFYRLEGELAEDDSVMTLRSFIDGEGEALVLEEIDELARHLVRLMPVLRLRDArfmRRIHNGTVPHSPQIEITARQLDFLSRELVSHPQ 198
                 ***************************************************************9999******************************** PP

     DUF2813 196 klsedelkselqalssllehYfleksasrkkkrkeressskeqllweklkslnqllkqeeekslrllllgllatllqakgkvelkriarPilllEdpea 294
                 +ls+++++++l+a+++llehYf+e+s++++++r +r++s++eq++w++l+ +n++++++  +s r++llgl+atllqakg+v+l+r arP+ll+Edpe+
  CTQ27295.1 199 NLSDGQIRQGLSAMVQLLEHYFAEQSSAQTRHRLMRRRSHDEQRSWRYLDIINRMIDKPGGRSHRVILLGLFATLLQAKGTVRLDRDARPLLLIEDPET 297
                 *************************************************************************************************** PP

     DUF2813 295 rLHPtmlaiaWellellPlQkiltTNSveLlsqvplesirrLvResdrtqayslerkslskedlRriaFHirlnRsla 372
                 rLHP+ml++aW+ll+llPlQ+++tTNS+eLls++p+e+++rLvRes r++a++l++  +++e++RriaFHir+nR+++
  CTQ27295.1 298 RLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEQVCRLVRESTRVSAWRLGPGGMNAEESRRIAFHIRFNRASS 375
                 ***************************************************************************975 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   3.9e-12     1e-08       1      66 [.       1      62 [.       1     142 [. 0.87
   2 !    9.2   0.0   0.00034      0.88     304     348 ..     264     311 ..     254     317 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 3.9e-12
      AAA_15  1 MkIkkikikNFRslkdveidlseeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedle 66
                M +++++i  FR +   ++ l+   +vliG+N+ GKSs+l+al l+l+ +   ++ ++++ ++++ 
  CTQ27295.1  1 MLLERVEIVGFRGINRLSLMLEQ-NNVLIGENAWGKSSLLDALTLLLSPE---FDLYHFVRDDFWF 62
                899********************.************************77...5455555555554 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00034
      AAA_15 304 llllillileaekk...dekeeknvilliEEPEahLHpqaqkvlikll 348
                  +ll l+ + ++ k   + ++    +lliE PE+ LHp + +v ++ll
  CTQ27295.1 264 VILLGLFATLLQAKgtvRLDRDARPLLLIEDPETRLHPIMLSVAWHLL 311
                 566666666666666665556667799***********9999887776 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     4e-08    0.0001       2      42 ..      25      74 ..      25      92 .. 0.72
   2 !   13.6   0.5   1.7e-05     0.042     244     284 ..     266     313 ..     263     329 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4e-08
      AAA_21  2 nvliGpNgsGKSnLLdaldllarl.........drdvegltdelsggggi 42
                nvliG N+ GKS+LLdal ll +          d+  ++ +d++++  ++
  CTQ27295.1 25 NVLIGENAWGKSSLLDALTLLLSPefdlyhfvrDDFWFPPGDIQGREHHL 74
                8********************87666666666555555555555555555 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.7e-05
      AAA_21 244 llalltallralkkg.......sllliDEpEngLHPkllrrllellke 284
                 ll+l++ ll+a +         +llli++pE+ LHP +l+  + ll++
  CTQ27295.1 266 LLGLFATLLQAKGTVrldrdarPLLLIEDPETRLHPIMLSVAWHLLNL 313
                 5678888888777778999999**************776666666654 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.7e-09   9.4e-06       7      49 ..       9      49 ..       3      54 .. 0.75
   2 ?   -3.8   0.0       4.5   1.1e+04      52      58 ..     368     374 ..     367     375 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 3.7e-09
      AAA_29  7 vNWgtfdghtieidlkgatlltGpsGsGKSTllDAiqalLvpa 49
                v    +  +++++ l+++ +l+G++  GKS+llDA++ lL p+
  CTQ27295.1  9 VGFRGI--NRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPE 49
                444444..44555555678*********************997 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.5
      AAA_29  52 vrfNkaa 58 
                 +rfN a+
  CTQ27295.1 368 IRFNRAS 374
                 79***98 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     9e-07    0.0023       1      44 [.       5      47 ..       5      60 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9e-07
      AAA_23  1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLy 44
                +++i +fr +++ ++ ++++ ++++G+N  GK+++ldA++l L 
  CTQ27295.1  5 RVEIVGFRGINRLSLMLEQN-NVLIGENAWGKSSLLDALTLLLS 47
                57888999999999999854.7899****************986 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.5e-06    0.0039       2      49 ..       3      47 ..       2      54 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.5e-06
                EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLG 49
                l+r+ei +F+ +  ++ +l +++  ++++G+N  GKs+lldA+  +L+
  CTQ27295.1  3 LERVEIVGFRGI--NRLSLMLEQ-NNVLIGENAWGKSSLLDALTLLLS 47
                799*********..577777776.89*****************98886 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.1e-05     0.079       7      40 ..      18      51 ..      14     218 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.1e-05
                EEETTSEEEEEESTTSSHHHHHHHHTTSS--SEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  7 klkegekvaivGenGaGKStLlkllagllkpteG 40
                +l   +  +++Gen  GKS+Ll +l+ ll+p+ +
  CTQ27295.1 18 SLMLEQNNVLIGENAWGKSSLLDALTLLLSPEFD 51
                5556677789****************99999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4122.78
//
Query:       CTQ27296.1  [L=85]
Description: hypothetical protein CH1034_170050 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      113  (0.00630264); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 673.39
//
Query:       CTQ27297.1  [L=371]
Description: macrolide transporter subunit, membrane fusion protein (MFP) component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-19   67.5   8.0    2.7e-18   66.0   8.0    1.8  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    2.8e-15   56.9   7.8    2.1e-13   50.9   0.1    3.3  3  HlyD_3           HlyD family secretion protein
    4.7e-09   35.9   3.0    4.7e-09   35.9   3.0    4.5  4  Biotin_lipoyl_2  Biotin-lipoyl like
    0.00017   21.4   1.7       0.03   14.1   0.2    2.9  3  Biotin_lipoyl    Biotin-requiring enzyme
     0.0003   19.7   0.0    0.00064   18.6   0.1    1.6  2  HlyD_2           HlyD family secretion protein
    0.00041   20.5   1.1       0.45   10.8   0.1    2.7  2  Peptidase_M23    Peptidase family M23
  ------ inclusion threshold ------
      0.011   15.4   0.5        1.4    8.7   0.1    2.4  2  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
      0.072   11.9   0.8        1.2    7.9   0.1    2.1  2  YqfD             Putative stage IV sporulation protein YqfD
       0.14   12.2   1.8         13    5.8   0.2    3.4  4  RnfC_N           RnfC Barrel sandwich hybrid domain
       0.14   11.6   0.0       0.51    9.9   0.0    2.0  2  PS_Dcarbxylase   Phosphatidylserine decarboxylase
       0.44   10.7   6.6        4.4    7.5   6.6    2.3  1  Med9             RNA polymerase II transcription mediator com
        1.8    8.0  26.9         12    5.3  25.9    2.4  2  MscS_porin       Mechanosensitive ion channel porin domain
        4.7    7.6   7.2        2.5    8.4   0.4    3.8  3  TOBE             TOBE domain


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   8.0     2e-21   2.7e-18       5     214 .]      49     294 ..      45     294 .. 0.74

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 2e-21
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....................XXXXXXXX...... CS
    HlyD_D23   5 tlravGtvayderrlarvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalk.....................akkklkkke..... 77 
                 ++ a+G+  +d  r ++v a+v+G  ++l+vn +gdkVkk+q L  ++ ++  +  +e  + l                      +       +     
  CTQ27297.1  49 SVLATGK--LDALRKVDVGAQVSGQLKTLHVN-IGDKVKKDQLLGVIDPEQAQNQIKEVEATLMelraqlnqaraesklaqvtlaR-------Qqqlaq 137
                 5555554..5778999****************.*********99999877666665555444444555655555555555555542.......055555 PP

                 .......XXXXXXXXXXX....XXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  78 .......lleaarerLrl....lgvseeqiae....lektgkvqktvtvkapisGvVteknvreGqyv...qpgdtlftiadlstVWveaevyeqqlal 158
                         l++a+  L +    +g  e+qi++    l   ++   ++ + ap++G Vt+ +  +Gq+v   q++ +++t+adlst+ v+a+v e+++  
  CTQ27297.1 138 rqlvsrqDLDTAATDLAVkqaqIGTIEAQIKRnqatLDTAKTNLDYTRILAPMAGEVTQITTLQGQTViaaQQAPNILTLADLSTMLVKAQVSEADVIH 236
                 56888884444444443300003333455544111144455555678999*****************955556667*********************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 159 vkvgqkvevtvealpgktfeGkvdyiyptvdpetRtv..kvRieldNpdgkLkpgmfA 214
                 +++gqk+ +tv   p +++eGk++ i+pt ++    +   +R+e++Np+g L+ +m A
  CTQ27297.1 237 LRPGQKAWFTVLGDPLTRYEGKLKDILPTPEKVNDAIfyYARFEVPNPQGILRLDMTA 294
                 *****************************999888763379***************87 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.2     0.009        12       3      45 ..      65     111 ..      63     135 .. 0.76
   2 ?    2.6   0.5      0.16   2.2e+02      25      54 ..     138     169 ..     123     184 .. 0.70
   3 !   50.9   0.1   1.5e-16   2.1e-13       2      96 ..     186     284 ..     185     305 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.009
      HlyD_3   3 rApvdGvvvelnveegevvqagdelleiip...pdtll.veakvpaa 45 
                  A v+G+++ l+v+ g+ v + + l  i p   +++++ vea++ + 
  CTQ27297.1  65 GAQVSGQLKTLHVNIGDKVKKDQLLGVIDPeqaQNQIKeVEATLMEL 111
                 599******************99999999976655555566665554 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.16
      HlyD_3  25 delleiippdtllveakvpaadlgsik..kkg 54 
                   l++  + dt++ +++v +a++g+i+   k 
  CTQ27297.1 138 RQLVSRQDLDTAATDLAVKQAQIGTIEaqIKR 169
                 4577778899999*************855333 PP

  == domain 3  score: 50.9 bits;  conditional E-value: 1.5e-16
      HlyD_3   2 lrApvdGvvvelnv.eegevvqagde..lleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktg..aykvevslen 95 
                 + Ap +G+v+++   +   v++a+++  +l++++ +t+lv+a+v++ad+  ++ +gqk+ +++  ++  +++gk++ i pt+++ +    y+++++++n
  CTQ27297.1 186 ILAPMAGEVTQITTlQGQTVIAAQQApnILTLADLSTMLVKAQVSEADVIHLR-PGQKAWFTVLGDPLTRYEGKLKDILPTPEKVNDaiFYYARFEVPN 283
                 88**********9978888899888899************************7.**********99999**************9777446666777777 PP

      HlyD_3  96 p 96 
                 p
  CTQ27297.1 284 P 284
                 6 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   3.0   3.4e-12   4.7e-09       3      49 ..      62     108 ..      60     109 .. 0.96
   2 ?   -1.9   1.3       2.2   3.1e+03      40      48 ..     113     121 ..     110     140 .. 0.63
   3 ?    2.3   0.2      0.11   1.5e+02      33      46 ..     146     159 ..     145     168 .. 0.78
   4 ?    4.5   0.0     0.023        32       5      24 ..     186     205 ..     182     208 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 3.4e-12
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaql 49 
                      v + a+vsG++++l+V  G+ Vk+ ++L ++D+++ q++++ +ea+l
       CTQ27297.1  62 VDVGAQVSGQLKTLHVNIGDKVKKDQLLGVIDPEQAQNQIKEVEATL 108
                      78899****************************************97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.2
  Biotin_lipoyl_2  40 lalaqaeaq 48 
                      ++l+qa a 
       CTQ27297.1 113 AQLNQARAE 121
                      555555443 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.11
  Biotin_lipoyl_2  33 lDsralqlalaqae 46 
                      lD+ a++la++qa+
       CTQ27297.1 146 LDTAATDLAVKQAQ 159
                      89**********65 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.023
  Biotin_lipoyl_2   5 IaapvsGrVaqlnVkdGqrV 24 
                      I ap +G V+q+   +Gq V
       CTQ27297.1 186 ILAPMAGEVTQITTLQGQTV 205
                      77999*************99 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   2.2e-05      0.03      43      73 .]      62      92 ..      60     102 .. 0.90
   2 ?    5.5   0.0     0.011        15      44      64 ..     185     205 ..     167     211 .. 0.82
   3 ?   -3.5   0.1       7.3     1e+04      22      31 ..     355     364 ..     354     365 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
                   EEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 43 meieapkaGvvkeilvkeGdtvevgdllaki 73
                   +++ a+++G++k ++v+ Gd+v+ ++ll +i
     CTQ27297.1 62 VDVGAQVSGQLKTLHVNIGDKVKKDQLLGVI 92
                   6788999999999999999999999999876 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.011
                    EEEBSSSEEEEEESSTTTEEE CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtv 64 
                     i ap+aG v++i   +G+tv
     CTQ27297.1 185 RILAPMAGEVTQITTLQGQTV 205
                    588999999999999999998 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 7.3
                    STTCEE-TTS CS
  Biotin_lipoyl  22 kvGdkVkagq 31 
                    ++Gd+V  g+
     CTQ27297.1 355 EEGDEVIVGE 364
                    4677766665 PP

>> HlyD_2  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   4.6e-07   0.00064       7     146 ..       2     148 ..       1     187 [. 0.77
   2 ?   -3.2   0.0       1.9   2.6e+03     257     304 ..     212     262 ..     194     268 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4.6e-07
      HlyD_2   7 kikrkrfnvlillvviiliYivvnlvisiiks...tieTeivkngeieesikkkgli..irdekviksnaegivkyf.vkeGdkvkkgkkvaeiqksea 99 
                 k+k kr +v  ll  +i++  +     +i ++   + +T +v++g++++s+   g +  +r+   + ++  g++k + v+ Gdkvkk++ +  i  ++a
  CTQ27297.1   2 KVKGKRRTVWWLL--AIVVLGLAIWGWRILNAplpNYQTLVVRKGDLQQSVLATGKLdaLRK-VDVGAQVSGQLKTLhVNIGDKVKKDQLLGVIDPEQA 97 
                 6778888999999..7777777777677766534488*************988776432787.778999999998752789*****************9 PP

      HlyD_2 100 deklke...kletlnerikeienneaieni.ekdiekldreInvlekdike 146
                 ++++ke   +l +l  ++++   + +++++    +++l ++  v ++d+  
  CTQ27297.1  98 QNQIKEveaTLMELRAQLNQARAESKLAQVtLARQQQLAQRQLVSRQDLDT 148
                 999876333678888888888888888888656666666665566666655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.9
      HlyD_2 257 dpifkivnnqkwYlvtlvekeevkslkegkkvkvkvddee...inakvyki 304
                   i+ +++   + + + v++ +v +l+ g+k    v  +    +++k+++i
  CTQ27297.1 212 PNILTLADLSTMLVKAQVSEADVIHLRPGQKAWFTVLGDPltrYEGKLKDI 262
                 567888899999999999999999999999865554333223466666666 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0023       3.1      47      76 ..      67      96 ..      37     118 .. 0.79
   2 !   10.8   0.1   0.00032      0.45      13      59 ..     183     227 ..     154     236 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0023
                   EEEEEESEESS-TTEEE-TTCEEEEEBSTS CS
  Peptidase_M23 47 tlyahlskisvkegqkVkaGqvIGtvgstg 76
                   ++ ++l++++v+ g+kVk+ q +G +  ++
     CTQ27297.1 67 QVSGQLKTLHVNIGDKVKKDQLLGVIDPEQ 96
                   566789999***************998554 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00032
                    T-EEEESSSEEEEEEEEETTTEEEEEEEECTCEEEEEEEESEESS-T CS
  Peptidase_M23  13 gtpVlAaadGtVvfagkkegyGnvviidhgdgystlyahlskisvke 59 
                     t +lA+++G+V+++ +    G++vi  ++   + + a ls++ vk+
     CTQ27297.1 183 YTRILAPMAGEVTQITT--LQGQTVIAAQQAPNILTLADLSTMLVKA 227
                    478************88..4599999999999999999***999885 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1     0.001       1.4      79     114 ..      68     103 ..      62     113 .. 0.84
   2 ?    4.5   0.0     0.019        27      39      69 ..     185     215 ..     170     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.001
                 TTTTTEEES----SEE-SEEEEEEE-HHHHGGGSS- CS
  PTS_EIIA_1  79 lkgegFellvkegdkVkagdklvevdleaikkagys 114
                 + g+  +l+v+ gdkVk+ ++l  +d+e+ +++ ++
  CTQ27297.1  68 VSGQLKTLHVNIGDKVKKDQLLGVIDPEQAQNQIKE 103
                 66788899*******************998877555 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.019
                 EEEES--EEEEE--SSSSEEEEESSSS-EEE CS
  PTS_EIIA_1  39 kvvapvdGkvekvfptkHaigiktddgvevl 69 
                 +++ap++G+v++++  +   +i +++  ++l
  CTQ27297.1 185 RILAPMAGEVTQITTLQGQTVIAAQQAPNIL 215
                 6889999999998888877777777666665 PP

>> YqfD  Putative stage IV sporulation protein YqfD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.04        56     206     231 ..      76      99 ..      73     121 .. 0.74
   2 ?    7.9   0.1   0.00084       1.2     164     209 ..     164     208 ..     143     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.04
        YqfD 206 lvkegdtVkkGdvLIsgvieekegkt 231
                  v++gd Vkk+++L  gvi+ ++ ++
  CTQ27297.1  76 HVNIGDKVKKDQLL--GVIDPEQAQN 99 
                 699**********9..6666333333 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00084
        YqfD 164 rlivevvekeeppeieekdepcnivAkkdGvItkvivesGeplvke 209
                 +++++ ++++  + +++  +++ i A ++G +t++++++G+ ++  
  CTQ27297.1 164 EAQIKRNQATLDTAKTNL-DYTRILAPMAGEVTQITTLQGQTVIAA 208
                 566666666666555554.5*********************99875 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.26   3.6e+02      44      80 ..      39      75 ..      36      80 .. 0.82
   2 ?    5.8   0.2    0.0098        13      36      60 ..      67      91 ..      66     101 .. 0.86
   3 ?    3.1   0.0     0.065        90      64      84 ..     181     201 ..     153     218 .. 0.78
   4 ?   -1.9   0.0       2.5   3.4e+03      15      36 ..     292     313 ..     289     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.26
      RnfC_N 44 plvkvgdkVlkGqkiaeaegfvsapvhasvsGtVkai 80
                ++v +gd  +     ++ +++ ++ v a vsG+ k++
  CTQ27297.1 39 LVVRKGDLQQSVLATGKLDALRKVDVGAQVSGQLKTL 75
                678888877777777888999999********99875 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0098
      RnfC_N 36 qhiGapakplvkvgdkVlkGqkiae 60
                q  G+  ++ v+ gdkV+k q+++ 
  CTQ27297.1 67 QVSGQLKTLHVNIGDKVKKDQLLGV 91
                6778889999***********9985 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.065
      RnfC_N  64 fvsapvhasvsGtVkaiekrl 84 
                 +  + + a+++G+V++i++ +
  CTQ27297.1 181 LDYTRILAPMAGEVTQITTLQ 201
                 5567899**********8765 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 2.5
      RnfC_N  15 lskekpieklplpkelvlplsq 36 
                 ++++ +i+ +++++ +++pls 
  CTQ27297.1 292 MTAQVHIQLAEVKNVITIPLSA 313
                 5778889999999999999975 PP

>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.1   1.5e+03     137     166 ..      62      92 ..      48      94 .. 0.78
   2 ?    9.9   0.0   0.00037      0.51      80     112 ..     181     213 ..     118     353 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
  PS_Dcarbxylase 137 vpvGatnvgsivln.vlkgdelkkGeelGyF 166
                     v vGa + g+ ++  v+ gd++kk + lG +
      CTQ27297.1  62 VDVGAQVSGQLKTLhVNIGDKVKKDQLLGVI 92 
                     5677777777765448899999999999986 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00037
  PS_Dcarbxylase  80 gdyHryhaPvsgkveerrhipGellsvnpsalk 112
                      dy r+ aP++g+v+++++++G+ + ++++a +
      CTQ27297.1 181 LDYTRILAPMAGEVTQITTLQGQTVIAAQQAPN 213
                     69*********************7766665544 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.6    0.0032       4.4       9      59 ..      79     138 ..      75     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0032
        Med9   9 ilksiekdp..........nlsskdletktgelrhkLkkarelirelpgidrsveeqeaei 59 
                 i  +++kd+          ++++k++e+ + elr +L++ar+  + l  +    ++q+a+ 
  CTQ27297.1  79 IGDKVKKDQllgvidpeqaQNQIKEVEATLMELRAQLNQARAESK-LAQVTLARQQQLAQR 138
                 66677777777777777788*********************9865.577777777777765 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  25.9     0.009        12      42     139 ..      97     190 ..      95     216 .. 0.84
   2 ?    0.0   0.2      0.36     5e+02      59      92 ..     196     229 ..     192     236 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.009
  MscS_porin  42 lqkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLnst 139
                  q +i++  ++l el+++l++     +e+  ++ +   +++L qr+l   ++l ++ ++la  ++q+ +++ ++ r q++l +a++ l+  r  L+  
  CTQ27297.1  97 AQNQIKEVEATLMELRAQLNQA---RAESKLAQVTLARQQQLAQRQLVSRQDLDTAATDLAVKQAQIGTIEAQIKRNQATLDTAKTNLDYTRI-LAPM 190
                 5789999999999999999999...99999999999***************************************************998877.5544 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.36
  MscS_porin  59 elealqkkkeeaskeilaklsleeLeqrllqtss 92 
                 ++ +lq ++  a ++ ++ l+l++L   l +++ 
  CTQ27297.1 196 QITTLQGQTVIAAQQAPNILTLADLSTMLVKAQV 229
                 8899999999999************999999885 PP

>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.3   3.2e+03      25      43 ..     155     173 ..     142     174 .. 0.68
   2 ?    8.4   0.4    0.0018       2.5      22      57 ..     215     247 ..     185     249 .. 0.64
   3 ?   -2.7   0.1       5.5   7.6e+03      44      55 ..     352     362 ..     348     364 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.3
        TOBE  25 vdlgggatLtArvtrrsae 43 
                 v  ++  t+ A + r++a+
  CTQ27297.1 155 VKQAQIGTIEAQIKRNQAT 173
                 4444444799999998875 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0018
        TOBE  22 eVrvdlgggatLtArvtrrsaeeLgLapGeeVfali 57 
                 +  +dl+    + A v+++ + +  L+pG+++++++
  CTQ27297.1 215 LTLADLSTML-VKAQVSEADVIH--LRPGQKAWFTV 247
                 3334555555.778888888888..********986 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.5
        TOBE  44 eLgLapGeeVfa 55 
                 + gL+ G+eV +
  CTQ27297.1 352 Q-GLEEGDEVIV 362
                 4.7999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1465  (0.0817112); expected 358.6 (0.02)
Passed bias filter:                      629  (0.0350828); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 2795.57
//
Query:       CTQ27298.1  [L=646]
Description: fused macrolide transporter subunits of ABC superfamily: ATP-binding component; membrane component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-39  134.1   1.9    7.6e-39  134.1   1.9    2.0  2  MacB_PCD         MacB-like periplasmic core domain
      1e-31  110.3   0.0    1.9e-31  109.4   0.0    1.4  1  ABC_tran         ABC transporter
    3.5e-12   46.6  11.7    1.3e-11   44.8   3.1    3.3  3  FtsX             FtsX-like permease family
    1.6e-06   27.8   0.2     0.0029   17.1   0.0    2.2  2  SMC_N            RecF/RecN/SMC N terminal domain
    0.00033   20.3   0.2    0.00075   19.2   0.2    1.5  1  AAA_29           P-loop containing region of AAA domain
    0.00037   20.4   1.3      0.058   13.2   0.3    2.3  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0048   16.8   0.2      0.014   15.3   0.2    1.7  1  RsgA_GTPase      RsgA GTPase
     0.0074   16.7   0.6      0.018   15.4   0.6    1.7  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.013   15.6   0.0      0.038   14.1   0.0    1.8  1  MMR_HSR1         50S ribosome-binding GTPase
      0.017   15.3   0.1      0.097   12.8   0.1    2.2  1  AAA_33           AAA domain
      0.029   14.1   2.2       0.26   11.0   1.9    2.6  2  AAA_30           AAA domain
      0.035   13.2   1.4      0.061   12.4   1.4    1.4  1  ABC2_membrane_3  ABC-2 family transporter protein
      0.036   14.5   0.8      0.036   14.5   0.8    2.0  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
      0.046   13.7   0.0        0.1   12.6   0.0    1.5  1  Glyco_transf_4   Glycosyltransferase Family 4
      0.059   13.6   0.4       0.29   11.4   0.4    2.1  1  AAA_22           AAA domain
      0.063   13.2   0.1        4.2    7.2   0.0    2.4  2  NTPase_1         NTPase
      0.087   13.1   0.0       0.22   11.8   0.0    1.7  1  AAA_28           AAA domain
      0.091   13.0  14.2        0.6   10.4   8.2    2.5  2  DUF4064          Protein of unknown function (DUF4064)
      0.095   13.2   0.1       0.17   12.4   0.1    1.3  1  AAA_23           AAA domain
       0.17   12.0   0.5       0.31   11.1   0.5    1.3  1  DUF87            Helicase HerA, central domain
        4.6    7.6  11.3       0.13   12.6   0.9    2.8  3  DUF4396          Domain of unknown function (DUF4396)


Domain annotation for each model (and alignments):
>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   1.9   8.9e-42   7.6e-39       1     192 [.     270     487 ..     270     490 .. 0.82
   2 ?   -3.0   1.8       9.3   7.9e+03       7      37 ..     524     554 ..     521     577 .. 0.69

  Alignments for each domain:
  == domain 1  score: 134.1 bits;  conditional E-value: 8.9e-42
    MacB_PCD   1 slltvLGiaiGvaaviaivslgeglqasvlsqisdl.gnlvtvtpgk.......gsgeslsdpdvealrrevp.veavapvv...tvrgggsg.eeevt 86 
                 +llt+LGi+iG+a+v++iv++g++++++vl +i++   n++ v+pgk       +++++l+++d+ a+ +++p v++++p v   + r + ++   +++
  CTQ27298.1 270 TLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRAIgTNTIDVYPGKdfgdddpRYQQALKYDDLLAI-QKQPwVRSATPAVsksL-RLRANNiDVAAS 366
                 89********************************9944567788887776666666666888877555.468********987642.333333444588 PP

    MacB_PCD  87 vvgvdpdyfkvfglklaeGrffteadlrggpnvvvigeelaerlf.....pvGdtirl..kpftVvGvledppgsgsalgddavylplttl........ 170
                 + gv p+yf v+g++++eG +f+e +l+++++vvv++++++++lf     +vG++i +   p tV+Gv+++++++++++   +v+lp+tt+        
  CTQ27298.1 367 AEGVGPQYFNVYGMTFSEGNTFNELQLNSRAQVVVLDSNTRRQLFpnkakVVGEVILVgnMPATVIGVADEKQSMFGSSKILRVWLPYTTMagrvmgqs 465
                 9999999*******99********9999*******************9988*****************966434444444667****999966666543 PP

    MacB_PCD 171 qrrsitvrlkdgadleaaaael 192
                   +sitvr+ +g d e+a+++l
  CTQ27298.1 466 WLNSITVRVHEGYDSETAEKQL 487
                 4566***************998 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.3
    MacB_PCD   7 GiaiGvaaviaivslgeglqasvlsqisdlg 37 
                 +++  +a v++ +++++ ++ sv+++ ++ g
  CTQ27298.1 524 TLVAVIALVVGGIGVMNIMLVSVTERTREIG 554
                 5555577788888888888888877766555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.0   2.2e-34   1.9e-31       1     136 [.      24     172 ..      24     173 .. 0.89

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 2.2e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren.............esd 82 
                 lk ++l++++ge+vaivG +G+GKStL+++l  l kpt+G+ ++ g+d+ +       +  r+++g+++q  +l ++lt+++n             ++ 
  CTQ27298.1  24 LKGITLSIHAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDIAQldgdALARLRREHFGFIFQRYHLLSHLTAAQNvevpavyagserrARL 122
                 789************************************************9996667778899**************************988443333 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++++l +lgl e    +++++ps+LSgGq+qrv++aral++  +++l+DEpt
  CTQ27298.1 123 ARAHELLVRLGLGE----RADYQPSQLSGGQQQRVSIARALMNGGEVILADEPT 172
                 44666666666555....778999*****************************9 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.049        42      16      54 ..     267     305 ..     263     337 .. 0.78
   2 ?    0.8   0.6      0.79   6.7e+02      18      38 ..     519     539 ..     513     547 .. 0.54
   3 !   44.8   3.1   1.5e-14   1.3e-11       2      96 .]     551     639 ..     550     639 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.049
        FtsX  16 qvlllllteillitlvalviGlglgllaaqllsdvllss 54 
                 +++ ll++ +++i++ + v+ +++g +a q++ + + ++
  CTQ27298.1 267 KMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRAI 305
                 667777777777777777777999999999987777665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.79
        FtsX  18 lllllteillitlvalviGlg 38 
                 l+l+lt +++i+lv   iG+ 
  CTQ27298.1 519 LQLFLTLVAVIALVVGGIGVM 539
                 555555555555555555543 PP

  == domain 3  score: 44.8 bits;  conditional E-value: 1.5e-14
        FtsX   2 reigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskilkkep 96 
                 reigi+ a+G++  +vl+++l+e++l++lv+ ++G++l+l++a +l+ +l      +   i ++++++l++++ ++l+ +l+g+l+++++++ +p
  CTQ27298.1 551 REIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGVALSLMIAFILQLFL------PGWEIGFSPLALLTAFLCSTLTGVLFGWLPARNAARLDP 639
                 9**********************************888888887777776......8889*******************************9987 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0015       1.3      25      42 ..      35      52 ..      24      67 .. 0.84
   2 !   17.1   0.0   3.4e-06    0.0029     129     212 ..     137     217 ..     101     222 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0015
                SEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlld 42
                ++ aivG+ GSGKs l++
  CTQ27298.1 35 EMVAIVGASGSGKSTLMN 52
                5889**********9987 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3.4e-06
                 CTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 129 sagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgvt 212
                 +a+ ++++LSgG+++ v++a       ++   + l De   aLD +  ++v  +l++ + +   +i+++++ ++ ++a+++v ++
  CTQ27298.1 137 RADYQPSQLSGGQQQRVSIARA----LMNGGEVILADEPTGALDSHSGEEVMAILHQLKAQgHTVIIVTHDPQVAAQAERIVEIR 217
                 33445669******99988754....4667778899********************99877688*****************9986 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   8.8e-07   0.00075      15      39 ..      27      51 ..      22      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 8.8e-07
      AAA_29 15 htieidlkgatlltGpsGsGKSTll 39
                 t++i+  +++ ++G+sGsGKSTl+
  CTQ27298.1 27 ITLSIHAGEMVAIVGASGSGKSTLM 51
                577888666***************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.3   6.8e-05     0.058       2      22 ..      37      57 ..      36      79 .. 0.85
   2 !    6.1   0.0    0.0095       8.1     234     301 ..     142     206 ..      79     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.8e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                 +++G+ gsGKS+L+ +l +l
  CTQ27298.1 37 VAIVGASGSGKSTLMNILGCL 57
                68****************988 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0095
      AAA_21 234 arelSdGtkrllalltallralkkg.sllliDEpEngLHPkllrrllellkelsrngaQviltTHSpll 301
                 +++lS G+++     ++++ral  g  ++l DEp   L+ +  ++++ +l +l++ g  vi++TH+p +
  CTQ27298.1 142 PSQLSGGQQQR----VSIARALMNGgEVILADEPTGALDSHSGEEVMAILHQLKAQGHTVIIVTHDPQV 206
                 55666666666....3444444444499999*********9999999999777778**********976 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   1.6e-05     0.014      98     119 ..      33      54 ..      18      67 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-05
                  TTSEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinal 119
                  +++++++vG SG GKStL+n l
   CTQ27298.1  33 AGEMVAIVGASGSGKSTLMNIL 54 
                  45999***************88 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.6   2.1e-05     0.018      21     107 ..      31     167 ..      22     217 .. 0.51

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.1e-05
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesa...........ipysalaqalareellrqllde...........aesaeleaw 97 
                  + +e+v ++G+sG+GKs+l++ l   l k     ++g+++  +++           +++ ++  ++ r +ll  l ++           +e +++ a 
  CTQ27298.1  31 IHAGEMVAIVGASGSGKSTLMNILG-CLDKP----TSGTYRVAGTDiaqldgdalarLRREHFGFIFQRYHLLSHLTAAqnvevpavyagSERRARLAR 124
                 456699**************96555.45555....3333333322211111222322333446666666666666665544444444433333333333 PP

      AAA_16  98 rekleeala.................................a 107
                 +++l+ +l+                                  
  CTQ27298.1 125 AHELLVRLGlgeradyqpsqlsggqqqrvsiaralmnggeviL 167
                 3333333336766666555555554444444444444444432 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.4e-05     0.038       2      19 ..      37      54 ..      36      76 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.4e-05
                EEEEESTTSSHHHHHHHH CS
    MMR_HSR1  2 vaivGrpNvGKStLinal 19
                vaivG + +GKStL+n l
  CTQ27298.1 37 VAIVGASGSGKSTLMNIL 54
                8***************88 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   0.00011     0.097       1     110 [.      36     208 ..      36     220 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
      AAA_33   1 lvllvGlpGsGKstlaerl..lkklg...avllssdt............................................lrrrlfgtdqqskt.... 46 
                 +v +vG++GsGKstl   l  l k +   + +  +d+                                            +            +    
  CTQ27298.1  36 MVAIVGASGSGKSTLMNILgcLDKPTsgtYRVAGTDIaqldgdalarlrrehfgfifqryhllshltaaqnvevpavyagsE------------Rrarl 122
                 6889***********9987655555567444444555788888788866666665555555555555555554444444441............03333 PP

      AAA_33  47 ..................dytrvldrlyqilnelarkalsagrnvil.dat..nlsrrerarflklarrlgvp...vrivvvetdeet 110
                                   ++++++    q+    +++al  g+ vil d +   l+ +  +++++++++l+++   v iv+ ++  + 
  CTQ27298.1 123 arahellvrlglgeradyQPSQLSGGQQQR--VSIARALMNGGEVILaDEPtgALDSHSGEEVMAILHQLKAQghtVIIVTHDPQVAA 208
                 333333344444433321233333333333..35555666666666655554455555555555555544444211444444444444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.9   0.00031      0.26      19     129 ..      35     207 ..      27     212 .. 0.60
   2 ?   -2.1   0.0         3   2.6e+03     133     165 ..     384     417 ..     382     437 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00031
      AAA_30  19 rvavltGpAGtGKttalkalreaweaa.g.grvigl...AptgkaAkvLa.eelgieastiakllkrlk.............................. 81 
                  +++++G+ G+GK+t+++ l  + +   g +rv+g       g a ++L+ e++g+  ++ + l + ++                              
  CTQ27298.1  35 EMVAIVGASGSGKSTLMNILGCLDKPTsGtYRVAGTdiaQLDGDALARLRrEHFGFIFQRYHLLSHLTAaqnvevpavyagserrarlarahellvrlg 133
                 4899***************98888877556788764110344555555554333433333332222222333444444444444444444444667777 PP

      AAA_30  82 ......................grarlepgtllivDE.agmvdtkqlaal...lkaaekagakvilvGDerQla 129
                                       +ra ++ g++++ DE +g +d+++ +++   l +++++g +vi+v  + Q a
  CTQ27298.1 134 lgeradyqpsqlsggqqqrvsiARALMNGGEVILADEpTGALDSHSGEEVmaiLHQLKAQGHTVIIVTHDPQVA 207
                 88888888888888888888886666777788888884455666555544000445555677888887777766 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3
      AAA_30 133 aGgvlrdlveaagigtaeLtevvRqke.seeraa 165
                 +G+++++l+ +++++++ L++++R +  ++ +++
  CTQ27298.1 384 EGNTFNELQLNSRAQVVVLDSNTRRQLfPNKAKV 417
                 5888999988889999999998887655555555 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.4   7.1e-05     0.061     152     260 ..     511     627 ..     426     635 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.1e-05
  ABC2_membrane_3 152 leeelsnvasflvgliliilifitasfiavsi...veEkesrikelqlvsgv...splqywlskilgdflvyllq.ll..lilllafglgipfg 236
                      + e ++ + + +++l+++i++ ++++ +++ +   v+E+++ i  ++ v      ++lq++l   + + lv+    ++  l+++++++  ++  
       CTQ27298.1 511 TAERTTHTLQLFLTLVAVIALVVGGIGVMNIMlvsVTERTREIGIRMAVG-ArasDVLQQFLIEAVLVCLVGGALgVAlsLMIAFILQ--LFLP 601
                      26777889999999999999999998888766777899999999888665.5232466666666666666665441441144445777..8888 PP

  ABC2_membrane_3 237 nlglll..llfllfglayialgylls 260
                      ++ + +  l +l  +l+++  g l++
       CTQ27298.1 602 GWEIGFspLALLTAFLCSTLTGVLFG 627
                      88887886777777888888888887 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       5.9     5e+03      21      65 ..     109     127 ..      80     147 .. 0.53
   2 ?   14.5   0.8   4.2e-05     0.036       7      73 ..     183     261 ..     179     266 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.9
  Glyco_trans_4_4  21 Vtvltpapapgapeleedgvrvhrlpvprrpspladlaalralrr 65 
                      V                         + ++  +  + a+l+++ +
       CTQ27298.1 109 VP------------------------AVYA--GSERRARLARAHE 127
                      22........................2222..1122222222222 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 4.2e-05
  Glyco_trans_4_4   7 vaelaraLaarGheVtvltpapapgapele....edgvrvhrlpvprrps.........pladlaalralrrllrqrrer 73 
                      v +++++L a+Gh V ++t +p+ +a++++    +dg  v++ p++r+++         p a+ +++ ++r++l + ++r
       CTQ27298.1 183 VMAILHQLKAQGHTVIIVTHDPQVAAQAERiveiRDGEIVRNPPASRQGGglrarpqaePSAWRQFTSGFREAL-VMAWR 261
                      67899**************7776665553333445555555445554442211221233777788888889988.44444 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012       0.1      10      54 ..     185     230 ..     183     264 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
  Glyco_transf_4  10 eLaraLarrGheVtvvtpgddgpleeev.elvvrvprvplpllkrl 54 
                      + ++L ++Gh V +vt++++ +++ e+ + +++++ v+ p+  r 
      CTQ27298.1 185 AILHQLKAQGHTVIIVTHDPQVAAQAERiVEIRDGEIVRNPPASRQ 230
                     67789********************998844444444443333333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   0.00034      0.29       6      26 ..      35      55 ..      31     207 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00034
      AAA_22  6 gilvvtGesGtGKTtllrrll 26
                 +++++G sG+GK+tl++ l 
  CTQ27298.1 35 EMVAIVGASGSGKSTLMNILG 55
                6899************98765 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.073        62       2      17 ..      37      52 ..      36      74 .. 0.79
   2 ?    7.2   0.0    0.0049       4.2      86     154 ..     153     223 ..     115     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.073
                EEEE--TTSSHHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlvk 17
                v+i G +G+GK+Tl++
  CTQ27298.1 37 VAIVGASGSGKSTLMN 52
                7899**********86 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0049
                 HHHHHHHHHHH-EEEE--.-STTGGG-HHHHHHHHHHHT.TTSEEEEE--SS--SHHHHHHHT-TT-EEEE CS
    NTPase_1  86 lealrkalseadviviDE.iGkmElkskkfkeaveevLk.sekpvlavihrrkdlalveeirerkdvkvfe 154
                 +++ r  +++ +vi+ DE  G +   s +   a+ + Lk ++  v++v h ++  a  e+i e +d+++++
  CTQ27298.1 153 VSIARALMNGGEVILADEpTGALDSHSGEEVMAILHQLKaQGHTVIIVTHDPQVAAQAERIVEIRDGEIVR 223
                 444555558899******88*******99999999999999************999999**9999999985 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00026      0.22       2      20 ..      37      55 ..      36      86 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00026
      AAA_28  2 ivitGgestGKTtlleaLa 20
                ++i+G++++GK+tl++ L 
  CTQ27298.1 37 VAIVGASGSGKSTLMNILG 55
                89**************996 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.3     0.023        20      56      78 ..     267     289 ..     247     297 .. 0.78
   2 ?   10.4   8.2    0.0007       0.6       3      82 ..     518     592 ..     516     596 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.023
     DUF4064  56 flstllivlgvialiaivlgivg 78 
                  + tll++lg+i  ia+v++iv 
  CTQ27298.1 267 KMRTLLTMLGIIIGIASVVSIVV 289
                 56678888888888888888876 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0007
     DUF4064   3 kaeiiLglIGgilgillglllllflfllssgefsqelteeqalsgedasavleflstllivlgvialiaivlgivgalll 82 
                 +  + L+l+++i  +++g++++ +++++ ++  + e      + +++ + ++++l+++li + +++l+ ++lg++ +l++
  CTQ27298.1 518 TLQLFLTLVAVIALVVGGIGVMNIMLVSVTER-TREI----GIRMAVGARASDVLQQFLIEAVLVCLVGGALGVALSLMI 592
                 56789*******************77775544.4444....468899999999999999999999999999999999887 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1    0.0002      0.17      21      38 ..      36      53 ..      12      57 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0002
      AAA_23 21 ltlItGpNGaGKTTildA 38
                +++I+G  G+GK+T+++ 
  CTQ27298.1 36 MVAIVGASGSGKSTLMNI 53
                679************986 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   0.00036      0.31      21      43 ..      36      54 ..      21      56 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
       DUF87 21 lvtrHlAilgsTGsGKSntvavL 43
                +    +Ai+g +GsGKS+++ +L
  CTQ27298.1 36 M----VAIVGASGSGKSTLMNIL 54
                4....8**************887 PP

>> DUF4396  Domain of unknown function (DUF4396)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.7      0.51   4.4e+02      69     103 ..     248     282 ..     242     311 .. 0.75
   2 ?   -2.8   0.1       8.6   7.3e+03      82     100 ..     526     544 ..     512     561 .. 0.60
   3 ?   12.6   0.9   0.00015      0.13       7      72 ..     573     642 ..     568     645 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.51
     DUF4396  69 laealktAlkadtlSmlamevgmnlvmllllgamd 103
                 ++ ++++Al + +  m+a ++   l+ml ++ +++
  CTQ27298.1 248 FTSGFREALVMAWRAMAANKMRTLLTMLGIIIGIA 282
                 66778888888888888888888888888754444 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 8.6
     DUF4396  82 lSmlamevgmnlvmllllg 100
                 + ++a  vg ++vm ++l 
  CTQ27298.1 526 VAVIALVVGGIGVMNIMLV 544
                 3444444555555555543 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 0.00015
     DUF4396   7 latlhClaGcaiGdilgmviltslslal.glpmaat...milsvvlalllgllletalllrekglslaea 72 
                  a+l Cl+G+a+G  l  +i++ l+l+l g+++  +   ++ +++ ++l+g+l+  ++ + + +l  ++a
  CTQ27298.1 573 EAVLVCLVGGALGVALSLMIAFILQLFLpGWEIGFSplaLLTAFLCSTLTGVLFGWLPARNAARLDPVDA 642
                 57899*********************999**995431115667778888888888888887766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1078  (0.0601261); expected 358.6 (0.02)
Passed bias filter:                      701  (0.0390987); expected 358.6 (0.02)
Passed Vit filter:                       131  (0.0073066); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.43
# Mc/sec: 4544.81
//
Query:       CTQ27299.1  [L=73]
Description: cold shock protein homolog [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-28   97.6   0.1    2.9e-28   97.5   0.1    1.0  1  CSD       'Cold-shock' DNA-binding domain
    0.00086   18.9   0.2     0.0011   18.6   0.2    1.3  1  OB_RNB    Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.1   3.2e-32   2.9e-28       2      64 ..       3      65 ..       2      67 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 3.2e-32
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEE CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVt 64
                 GtVkwfn++kgfGFI +e g++d+F H+s iq+dg+r+L++gq+V F+v++g kg++A+ ++
  CTQ27299.1  3 MGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQAVRFDVHQGPKGNHASVIV 65
                59*********************************************************9876 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2   1.3e-07    0.0011       6      24 ..      11      29 ..       4      38 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.3e-07
                -SSS-EEEEECT.TEEEEE CS
      OB_RNB  6 hkkGFGFlipdegkeDifi 24
                ++kGFGF+ p++g+eDif 
  CTQ27299.1 11 NAKGFGFICPEGGGEDIFA 29
                79****************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 620.52
//
Query:       CTQ27300.1  [L=105]
Description: regulatory protein for ClpA substrate specificity [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-34  117.7   0.2    1.7e-34  117.4   0.2    1.1  1  ClpS      ATP-dependent Clp protease adaptor protein ClpS


Domain annotation for each model (and alignments):
>> ClpS  ATP-dependent Clp protease adaptor protein ClpS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.2   9.6e-39   1.7e-34       1      80 []      22     101 ..      22     101 .. 0.98

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 9.6e-39
                 XXX--EEEEEES-S-S-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHSEEEEEEE-HHHHHHHHHHHHH......TT--EE CS
        ClpS   1 kepkqYkvvLlNDdvttmefVvevLqkvfgkskeeAteimlevhreGravvgvgtreiaetkveqverlarreghpLkvt 80 
                 k+p++Ykv+L+NDd+t+mefV++vLqk+f+++ e+At++ml+vh+eG+a++gv+t e+aetkv+ v+++ar+++hpL +t
  CTQ27300.1  22 KPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYEGKAICGVFTAEVAETKVAMVNQYARENEHPLLCT 101
                 689**************************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 802.09
//
Query:       CTQ27301.1  [L=759]
Description: ATP-binding protease component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-51  174.0   0.0    1.6e-47  161.8   0.0    2.7  2  AAA_2            AAA domain (Cdc48 subfamily)
    7.9e-30  102.9   2.3    1.2e-29  102.2   1.1    2.0  1  AAA_lid_9        AAA lid domain
    6.2e-25   88.2   0.1    7.9e-13   49.0   0.0    3.4  3  AAA              ATPase family associated with various cellul
    2.2e-24   85.3   0.0    6.2e-24   83.9   0.0    1.9  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    1.9e-18   66.8   0.1    1.2e-12   48.0   0.0    2.7  2  AAA_5            AAA domain (dynein-related subfamily)
    1.6e-16   60.2   1.3    8.2e-15   54.7   1.2    3.0  2  Clp_N            Clp amino terminal domain, pathogenicity isl
    2.6e-12   47.4   6.5    1.7e-06   28.5   0.2    4.0  3  AAA_16           AAA ATPase domain
    3.7e-12   46.3   0.2    9.5e-05   22.2   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
      1e-10   41.4   0.1    1.3e-07   31.2   0.0    3.6  3  TniB             Bacterial TniB protein
    5.3e-08   33.2   2.4      0.028   14.7   0.0    4.2  3  AAA_22           AAA domain
    1.1e-06   28.8   0.0      0.023   14.7   0.0    3.5  3  ResIII           Type III restriction enzyme, res subunit
    8.2e-06   25.6   5.9      0.066   13.0   0.3    4.6  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    8.3e-06   25.9   0.0      0.016   15.2   0.0    2.8  2  AAA_14           AAA domain
    1.7e-05   24.2   0.1       0.23   10.6   0.0    2.7  2  TIP49            TIP49 P-loop domain
    2.3e-05   24.0   0.0       0.23   11.0   0.0    2.8  3  AAA_7            P-loop containing dynein motor region
    3.2e-05   23.7   0.0      0.076   12.7   0.0    2.6  2  IstB_IS21        IstB-like ATP binding protein
    6.5e-05   23.5   0.2      0.053   14.1   0.0    3.1  3  AAA_18           AAA domain
    0.00016   21.6   0.2     0.0022   17.8   0.1    2.6  2  AAA_3            ATPase family associated with various cellul
    0.00019   20.5   0.0    0.00044   19.3   0.0    1.5  1  AAA_6            Hydrolytic ATP binding site of dynein motor 
    0.00021   21.0   0.1       0.44   10.1   0.0    2.7  2  AAA_25           AAA domain
    0.00032   20.9   0.0      0.084   13.0   0.0    2.8  2  AAA_33           AAA domain
    0.00032   20.2   3.4        4.1    6.7   0.1    4.3  5  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0006   19.8   0.1       0.37   10.8   0.1    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0023   18.3   0.0        1.9    8.9   0.0    2.7  2  RNA_helicase     RNA helicase
     0.0029   17.5   0.0        1.2    9.0   0.0    2.5  2  RsgA_GTPase      RsgA GTPase
     0.0075   16.3   0.2          2    8.5   0.0    2.7  2  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
  ------ inclusion threshold ------
      0.011   15.4   0.0        3.1    7.6   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
       0.02   14.8   0.0       0.28   11.1   0.0    2.6  2  NACHT            NACHT domain
       0.04   13.3   0.0       0.14   11.5   0.0    1.9  2  IPT              Isopentenyl transferase
      0.042   13.8   0.0          1    9.2   0.0    2.4  2  Rad17            Rad17 P-loop domain
      0.047   14.2   2.4        2.8    8.4   0.2    3.3  3  AAA_23           AAA domain
      0.053   12.8   2.0         13    5.0   0.0    3.7  5  Zeta_toxin       Zeta toxin
      0.057   13.2   0.2        2.5    7.9   0.0    3.5  4  DNA_pol3_delta2  DNA polymerase III, delta subunit
      0.058   12.8   0.1         10    5.5   0.0    2.4  2  ParA             NUBPL iron-transfer P-loop NTPase
      0.066   12.8   0.2        8.5    6.0   0.2    2.5  2  SRP54            SRP54-type protein, GTPase domain
      0.083   12.8   0.4       0.21   11.5   0.0    1.9  2  CHAD             CHAD domain
       0.11   12.1   0.0         15    5.1   0.0    2.4  2  Hpr_kinase_C     HPr Serine kinase C-terminal domain
       0.13   12.2   2.6        5.4    6.8   0.1    3.6  4  ATPase_2         ATPase domain predominantly from Archaea


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0023       1.1       4      88 ..     209     300 ..     206     331 .. 0.73
   2 !  161.8   0.0   3.4e-50   1.6e-47       1     171 []     487     648 ..     487     648 .. 0.97

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0023
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.........EEEEETGGG----.----- CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.........ivllDEidKihpk.essga 88 
                  + ll+g++gvGkt +a+ la  +  + + + ++ad++ +    ++ +l++  +   ++ ++++            i+++DEi  i      sg 
  CTQ27301.1 209 NNPLLVGESGVGKTAIAEGLAWRIV-QGDVPEVMADCTIYSL--DIGSLLAGTKYRGDFEKRFKALLkqleqdtnsILFIDEIHTIIGAgAASGG 300
                 567899***************9987.8899999999999999..66666666666555555554444666666688*******988875444444 PP

  == domain 2  score: 161.8 bits;  conditional E-value: 3.4e-50
                 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG-------- CS
       AAA_2   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessg 87 
                 +p++s+l++gptgvGkte++ +la+ l +    +l r+d+se++e    +h+vsrligappgyvg+++gG            ++llDEi+K+hp     
  CTQ27301.1 487 KPVGSFLFAGPTGVGKTEVTVQLAKALGI----ELLRFDMSEYME----RHTVSRLIGAPPGYVGFDQGGlltdavikhphaVLLLDEIEKAHP----- 572
                 5899************************9....************....*********************************************..... PP

                 -----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2  88 advSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpei 171
                       +V+++LLq++++gtltd++grk d++n++++mt++ g+++++++s      +++ + ++++e+kk ++pE+ +Rl+ i
  CTQ27301.1 573 ------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSI--GLIQQDNSPDAMDEIKKIFTPEFRNRLDNI 648
                 ......*******************************************666..5889999999*****************975 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   1.1   2.6e-32   1.2e-29       1     100 [.     351     453 ..     351     457 .. 0.89

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 2.6e-32
   AAA_lid_9   1 seeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpee...leklekelaklekekealekeeekek 96 
                 s+eet++i++glk+kye+hH+v+++ +a++aav+l+ +Yi+dr+lPdkAID++Dea+ar+rl   sk+++   ++++e+ +a++ +  e+ +++++++ 
  CTQ27301.1 351 SVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKtvnVADIESVVARIARIPEKSVSRSDRDT 449
                 689**********************************************************87655554434499***********9999999998877 PP

   AAA_lid_9  97 aerl 100
                  ++l
  CTQ27301.1 450 LKNL 453
                 6665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   1.7e-15   7.9e-13       2     125 ..     212     343 ..     211     348 .. 0.76
   2 !   35.0   0.0   3.6e-11   1.7e-08       2     111 ..     493     608 ..     492     623 .. 0.84
   3 ?   -1.0   0.0       4.7   2.2e+03      43      72 ..     630     659 ..     609     680 .. 0.71

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1.7e-15
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 ll+G  G+GKT++a+ +a  +          + ++++++  +ll   ky g+ ek++++l+k++++    silfiDEi+ ++++   ++s+ + +++n 
  CTQ27301.1 212 LLVGESGVGKTAIAEGLAWRIvqgdvpevmaDCTIYSLDIGSLLagTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAG--AASGGQVDAANL 307
                 89******************655444443336889****999997778****************9997.9**************9..566666666666 PP

                 HHHHHHHTTTSSSTEEEEEEESS.....GGGSTHHHHSTTSS CS
         AAA  89 Llteldgvkkkeskvivigatnr.....pdkldpallrgRfd 125
                 + + l+  k     + vig t++     + + d+al  +Rf+
  CTQ27301.1 308 IKPLLSSGK-----IRVIGSTTYqefsnIFEKDRALA-RRFQ 343
                 666665554.....58999999866333333344444.5665 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 3.6e-11
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellsk............yvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeervvn 87 
                 l+ Gp G+GKT +  ++ak lg+e+l++++se ++             yvg  +    +l+++a  k  p  +l++DEi++ +++             n
  CTQ27301.1 493 LFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERhtvsrligappgYVGFDQG---GLLTDAVIKH-PhAVLLLDEIEKAHPDV-----------FN 576
                 89********************************7789***99998776664443...4455554444.559**********9999...........** PP

                 HHHHHHHHTTTS........SSTEEEEEEESS CS
         AAA  88 qLlteldgvkkk........eskvivigatnr 111
                  Ll+++d+ +           ++v+++++tn 
  CTQ27301.1 577 LLLQVMDNGTLTdnngrkadFRNVVLVMTTNA 608
                 ********999999999999666999999996 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 4.7
                 HHHHHHHHHHHHHTSTS.EEEEEETGGGHHH CS
         AAA  43 ekkirelfkeakekakp.silfiDEidalak 72 
                 +++i+++f+   +++    i+++D +   + 
  CTQ27301.1 630 MDEIKKIFTPEFRNR-LdNIIWFDHLSTTVI 659
                 567778887755555.448888888766555 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   1.3e-26   6.2e-24       1      81 []     654     734 ..     654     734 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 1.3e-26
                    SCHHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSEEEE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtvrv 81 
                    L+   ++++vd+++ +l+ +l ++gv+lev++ea+d+la kgyd+++GARp+ r+iq ++++pla+e+l+g l++g++v+v
     CTQ27301.1 654 LSTTVIHQVVDKFIVELQVQLDQKGVSLEVSQEARDWLATKGYDRAMGARPMGRVIQDNLKKPLANELLFGSLVDGGQVTV 734
                    77889************************************************************************9987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     2e-05    0.0096       3      76 ..     212     290 ..     210     295 .. 0.82
   2 !   48.0   0.0   2.6e-15   1.2e-12       2     124 ..     492     610 ..     491     621 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-05
                 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--...........--------..G-SEEEEESGGG CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik..ngttslvdsplvraar..egeilvlDEver 76 
                 lLvG++G+gK+ +ae la ++ +  v +v+    + + d+   +  +   g+ + + ++l ++ +  + +il++DE+++
  CTQ27301.1 212 LLVGESGVGKTAIAEGLAWRIvQGDVPEVMADCTIYSLDIGSLLAGTkyRGDFEKRFKALLKQLEqdTNSILFIDEIHT 290
                 8********************9888888888877776665444443355888888888999898899999999999986 PP

  == domain 2  score: 48.0 bits;  conditional E-value: 2.6e-15
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------...G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar...egeilvlDEveraesevlnsLlslleerrllle 97 
                 +l  Gp+G+gK+e++ +la+al+ e++   +++++++ ++   +   +g   + ++ l + a      ++l+lDE+e+a+++v+n Ll+++++ +l  +
  CTQ27301.1 492 FLFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVikhPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLT-D 589
                 6889************************************99999889999999999988887788889***************************9.7 PP

                 -SSSEEE---......-EEEEEESS-- CS
       AAA_5  98 eggelvkaknddllerfrviatanpld 124
                 ++g+  +++n      + +++t+n   
  CTQ27301.1 590 NNGRKADFRN------VVLVMTTNAGV 610
                 7777778888......99999999765 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   1.2   1.7e-17   8.2e-15       1      52 [.      13      62 ..      13      63 .. 0.97
   2 ?    2.1   0.0      0.46   2.1e+02      11      40 ..     101     130 ..      95     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.7e-17
                HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHH CS
       Clp_N  1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekll 52
                A++ A++++h+++++EHLLlALl+++   a+++L+++ vdl alr+++e+++
  CTQ27301.1 13 AFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAFI 62
                7899**********************..*********************997 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.46
                 SSB-HHHHHHHHHHSCTSHHHHHHHHTTSS CS
       Clp_N  11 qyistEHLLlALleeddGlaarlLkkaGvd 40 
                 ++++   +L A+++e ++ aa lL+k  v+
  CTQ27301.1 101 SEVTGANVLVAIFSEQESQAAYLLRKHEVS 130
                 5566666899***************99876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.2   3.7e-09   1.7e-06       1     106 [.     188     293 ..     188     341 .. 0.69
   2 !   17.9   0.0   6.5e-06    0.0031       2      49 ..     461     514 ..     460     536 .. 0.89
   3 ?    1.8   0.0      0.58   2.7e+02     135     162 ..     557     585 ..     548     601 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 3.7e-09
      AAA_16   1 rlvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesa.......ipysa.laqalareellrqlldeaes 91 
                 +l+GRe+ele+  ++l+r r++ p   ll+GesGvGK+++++ l+ ++ + ++  + ++c+ ++ +       + y   + + + +  ll+ql+++++s
  CTQ27301.1 188 PLIGREKELERAIQVLCRRRKNNP---LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDigsllagTKYRGdFEKRF-K-ALLKQLEQDTNS 281
                 589******888888888877766...99************9999877777555577777777333455555688877677777.6.899999999444 PP

      AAA_16  92 aeleawrekleeala 106
                      + +++++ ++
  CTQ27301.1 282 ---ILFIDEIHTIIG 293
                 ...334444444444 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 6.5e-06
      AAA_16   2 lvGReeeleqLlsalervrsgrp......elvllsGesGvGKsslvrellrale 49 
                 ++G ++ +e+L++a++++r+g +      ++ l+ G+ GvGK+ +  +l++al 
  CTQ27301.1 461 VFGQDKAIEALTEAIKMARAGLGhehkpvGSFLFAGPTGVGKTEVTVQLAKALG 514
                 5899**************99999999*******************999998876 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.58
      AAA_16 135 rp.lvlvlDdlqwadeaslqllaaLlrll 162
                 +p  vl+lD++++a ++  +ll + ++++
  CTQ27301.1 557 HPhAVLLLDEIEKAHPDVFNLLLQVMDNG 585
                 4449*************999987777765 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     2e-07   9.5e-05       2     105 ..     190     291 ..     189     329 .. 0.85
   2 !   21.9   0.1   2.4e-07   0.00011       8     148 ..     468     613 ..     461     619 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2e-07
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBS.SSSSTTTSS-BEHHHHHTTT CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhe.kGaFtGAekekkGlfekadg 94 
                      ig++++l+++++ + +  + + + l++GesG+GK+ +a+ +  +  + + p v  +c+ ++ + + s L G++ +G F    k+   ++e+  +
       CTQ27301.1 190 IGREKELERAIQVLCR--RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD-IGSLLAGTKyRGDFEKRFKALLKQLEQDTN 280
                      5666666666665544..44567899********************************99887.57889998648*****999999******** PP

                      SEEEEETGGGS CS
  Sigma54_activat  95 GtlfLDeigel 105
                      ++lf+Dei+++
       CTQ27301.1 281 SILFIDEIHTI 291
                      ********987 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 2.4e-07
                      HHHHHHHHHHHCTSS.......S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHT CS
  Sigma54_activat   8 lkelleqikkvaktd.......lsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..Glfeka 92 
                      +++l+e ik++ +          s l  G +G+GK+ +  ++ +a      ++++++++++ e+   s+L G   G + G ++      ++ k 
       CTQ27301.1 468 IEALTEAIKMARAGLghehkpvGSFLFAGPTGVGKTEVTVQLAKA---LGIELLRFDMSEYMERHTVSRLIGAPPG-YVGFDQGGLltDAVIKH 557
                      555544444443211222334467899********9988776654...55789********************998.88876654323444455 PP

                      TTSEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHH CS
  Sigma54_activat  93 dgGtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleea 148
                       + +l+LDei++  +++ + Ll+v+++g+++   ++k    +v ++++tn  ++e+
       CTQ27301.1 558 PHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRET 613
                      689****************************9999999999999*****9987765 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   2.8e-10   1.3e-07      21     184 ..     194     347 ..     192     351 .. 0.89
   2 ?   -1.7   0.0       3.4   1.6e+03     144     172 ..     448     474 ..     442     480 .. 0.79
   3 ?    0.6   0.0      0.66   3.1e+02      35      54 ..     489     508 ..     458     514 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 2.8e-10
        TniB  21 erLeeLleypkrkrmpnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleqqvlrllrelk 119
                 ++Le+ +++  r r +n llvG+s +GKt+i+e  a              +++  ++p+   +  +y+  + +l a +k r + +k  ++ l+ l++  
  CTQ27301.1 194 KELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA-------------WRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDT 279
                 5789999999999******************98765.............5677788899999999********************************** PP

        TniB 120 vrvLiiDEihnllagsark..qreflnalksLgnelkipivlvGt.eealralrtDpqlasRFepial 184
                   +L iDEih ++ + a +  q  + n++k L    ki +++  t +e  +++++D  la+RF++i +
  CTQ27301.1 280 NSILFIDEIHTIIGAGAASggQVDAANLIKPLLSSGKIRVIGSTTyQEFSNIFEKDRALARRFQKIDI 347
                 ***********99655543238889*****************98846778999***********9987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.4
        TniB 144 nalksLgnelkipivlvGteealralrtD 172
                  +lk+Lg++lk  + ++G ++a++al++ 
  CTQ27301.1 448 DTLKNLGDRLK--MLVFGQDKAIEALTEA 474
                 57999999998..5779999999999765 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.66
        TniB  35 mpnlllvGdsnnGKtmivek 54 
                 + + l++G++ +GKt +  +
  CTQ27301.1 489 VGSFLFAGPTGVGKTEVTVQ 508
                 368899*********98765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.9e-05     0.028       4     126 ..     207     320 ..     204     332 .. 0.69
   2 ?   -1.9   0.0       7.7   3.6e+03      20     100 ..     323     406 ..     322     408 .. 0.66
   3 !   13.9   0.3    0.0001     0.049       7     119 ..     491     593 ..     486     611 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.9e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh 102
                 +++  +++GesG+GKT  ++ l+ + ++       +++ v     ++++  +l  ++ + l   +   r++ e  ++al ++l++    ++l iDE++ 
  CTQ27301.1 207 RKNNPLLVGESGVGKTAIAEGLAWRIVQG------DVPEV----MADCTIYSL--DIGSLLAGTKY--RGDFEKRFKALLKQLEQDTN-SILFIDEIHT 290
                 5677799***************9998765......55533....344444445..45555554333..47778888888888888888.8999*****9 PP

      AAA_22 103 lr.....s...eealeeLrsllnlsrkgvqli 126
                 ++     s    +a + ++ ll   + ++++i
  CTQ27301.1 291 IIgagaaSggqVDAANLIKPLLS--SGKIRVI 320
                 87776652455777777777777..7666666 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 7.7
      AAA_22  20 tllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav.....ielliiDEa 100
                 t+++++ + ++++ +    +r + + +t ps ++  ++ + l  +++  ++  r + +++++a+e a++   +     +++ +iDEa
  CTQ27301.1 323 TTYQEFSNIFEKDRA--LaRRFQKIDITEPSVEETVQIINGLKPKYEAHHDV-RYTAKAVRAAVELAVKYINDrhlpdKAIDVIDEA 406
                 666666666643333..13477777777777778888888888888887777.7777777777776666555555577777778876 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 0.0001
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrs 105
                 + +  G++G+GKT +  +l++ l         + e++++++++ ++    ++ + r +g +  +      +   +l++a+ ++   ++l++DE+++  +
  CTQ27301.1 491 SFLFAGPTGVGKTEVTVQLAKAL---------GIELLRFDMSEYME----RHTVSRLIGAPPGY---VGFDQGGLLTDAVIKHPH-AVLLLDEIEKA-H 571
                 56778******************.........9***********95....56667788887777...666677899999999999.9**********.* PP

      AAA_22 106 eealeeLrsllnl........s 119
                 +++++ L + +++        +
  CTQ27301.1 572 PDVFNLLLQVMDNgtltdnngR 593
                 *******998886665555553 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0      0.02       9.3      21      50 ..     198     234 ..     166     240 .. 0.76
   2 ?    3.5   0.0      0.14        64     122     147 ..     269     294 ..     245     339 .. 0.80
   3 !   14.7   0.0   4.8e-05     0.023       7      48 ..     463     513 ..     458     517 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.02
                 .........TTSEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII  21 s.......krdkrglikmaTGtGKTlvaaklierllk 50 
                         +r+++ l++ + G+GKT +a  l++r+ +
  CTQ27301.1 198 RaiqvlcrRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 234
                 033334437788999****************999865 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.14
                 .....HHHTTT-SEEEEETGGGTTS. CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgak 147
                 +   ++l++d++ +++iDE H + ++
  CTQ27301.1 269 KALLKQLEQDTNSILFIDEIHTIIGA 294
                 5567889999999********98764 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 4.8e-05
                 HHHHHHHHHT............TTS...EEEEEESTTSTHHHHHHHHHHHH CS
      ResIII   7 yQeeaienlleklks......krdk...rglikmaTGtGKTlvaaklierl 48 
                  Q +aie+l e++k       +++k    +l++ +TG+GKT v ++l+++l
  CTQ27301.1 463 GQDKAIEALTEAIKMaraglgHEHKpvgSFLFAGPTGVGKTEVTVQLAKAL 513
                 6999******99999999998444456799****************99876 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.4    0.0046       2.2      74      96 ..     267     291 ..     190     294 .. 0.65
   2 !   13.0   0.3   0.00014     0.066      10      61 ..     462     517 ..     456     618 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0046
      RuvB_N  74 dlaalltnlee..kdvlfideihrl 96 
                  + all++le+  + +lfideih +
  CTQ27301.1 267 RFKALLKQLEQdtNSILFIDEIHTI 291
                 457999999863368********76 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00014
      RuvB_N  10 igqekvkeklkifieaakk....reealdhvllyGpPGlGkttlakiiakelgvkl 61 
                  gq+k  e l+ +i+ a++     ++++   l++Gp G+Gkt ++  +ak lg++l
  CTQ27301.1 462 FGQDKAIEALTEAIKMARAglghEHKPVGSFLFAGPTGVGKTEVTVQLAKALGIEL 517
                 589999999999999888532226788999********************999875 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.4e-05     0.016       7     129 ..     213     354 ..     208     356 .. 0.69
   2 !    7.5   0.0    0.0084       3.9       8      90 ..     495     585 ..     491     592 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.4e-05
      AAA_14   7 itGaRrvGKTtllkqlikell......vkkesilyinldderd...kkla.dpekllelileklkeekktylflDEiqev..........pewekalks 85 
                 ++G   vGKT +++ l+ +        v   ++  ++ld  ++   +k++ d+ek  +++l++l+++ +++lf+DEi+ +           ++ + +k 
  CTQ27301.1 213 LVGESGVGKTAIAEGLAWRIVqgdvpeV-MADCTIYSLDIGSLlagTKYRgDFEKRFKALLKQLEQDTNSILFIDEIHTIigagaasggqVDAANLIKP 310
                 5666678888888888766556665532.23444445555444445333346777778888887677999**********8888887777777777777 PP

      AAA_14  86 lvdegknldvivtGSnskllskeia...tslagrvaeielyplsfaE 129
                 l+ +g   ++ v GS  +   ++i      la+r ++i++   s++E
  CTQ27301.1 311 LLSSG---KIRVIGSTTYQEFSNIFekdRALARRFQKIDITEPSVEE 354
                 77777...788889988888877653336788888888888777777 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0084
      AAA_14   8 tGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe............kllelileklkeekktylflDEiqev.pewekalkslvdeg 90 
                  G+  vGKT +  ql+k l     + l +++ +  ++   + +            +   l+ + + ++ + +l+lDEi ++ p++++ l +++d+g
  CTQ27301.1 495 AGPTGVGKTEVTVQLAKALG---IELLRFDMSEYMERH--TVSrligappgyvgfDQGGLLTDAVIKHPHAVLLLDEIEKAhPDVFNLLLQVMDNG 585
                 69999**********99888...455555555544422..21112333434443322233333322257899******987689999999999987 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00049      0.23      54      93 ..     212     251 ..     188     260 .. 0.83
   2 !   10.5   0.0   0.00055      0.26      26      77 ..     461     516 ..     440     528 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00049
                 XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX CS
       TIP49  54 LlaGpsgtGktalaiaiskelg.edvpfvalsgsevyslev 93 
                 Ll+G+sg Gkta+a +++  +   dvp  +++   +ysl++
  CTQ27301.1 212 LLVGESGVGKTAIAEGLAWRIVqGDVP-EVMADCTIYSLDI 251
                 899***************998835677.56788899*9998 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00055
                 XXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  26 lvGqkkareaagvivelik.....ekklaGravLlaGpsgtGktalaiaiskelged 77 
                 + Gq ka ea +  +++ +     e+k    + L+aGp+g Gkt + + ++k+lg +
  CTQ27301.1 461 VFGQDKAIEALTEAIKMARaglghEHKPV-GSFLFAGPTGVGKTEVTVQLAKALGIE 516
                 56999999999999999882222233433.378*********************943 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00049      0.23      30      53 ..     205     228 ..     195     290 .. 0.78
   2 !    9.7   0.0    0.0012      0.57      35      82 ..     491     535 ..     482     541 .. 0.84
   3 ?   -2.8   0.0       8.3   3.9e+03     123     152 ..     575     603 ..     553     613 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00049
       AAA_7  30 lknkkpvllvGptGtGKtviikdl 53 
                  ++k++ llvG++G+GKt+i++ l
  CTQ27301.1 205 RRRKNNPLLVGESGVGKTAIAEGL 228
                 4567789*************9875 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0012
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdii 82 
                 ++l+ GptG+GKt ++ +l k+l    +  l + +s +++ +++ ++i
  CTQ27301.1 491 SFLFAGPTGVGKTEVTVQLAKALG---IELLRFDMSEYMERHTVSRLI 535
                 579***************999998...777778888877777777666 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 8.3
       AAA_7 123 iellRqlldyggwYdrkklefkeikdvqlv 152
                 ++ll q++d+g + d++   + + ++v+lv
  CTQ27301.1 575 FNLLLQVMDNGTLTDNNG-RKADFRNVVLV 603
                 579999999999988854.33444444444 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00016     0.076      45      76 ..     206     237 ..     192     298 .. 0.71
   2 !    8.2   0.0    0.0041         2      50      76 ..     492     522 ..     485     538 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00016
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavragl 76 
                 ++k+n +l+G sGvGK+ +a  l+ + v+ ++
  CTQ27301.1 206 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDV 237
                 68999******************999887554 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0041
   IstB_IS21  50 ivllGpsGvGKs....hlaialgveavragl 76 
                 +++ Gp+GvGK+     la alg e  r ++
  CTQ27301.1 492 FLFAGPTGVGKTevtvQLAKALGIELLRFDM 522
                 7899*******93333466677777766555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.043        20       3      21 ..     213     231 ..     212     287 .. 0.79
   2 !   14.1   0.0   0.00011     0.053       3      25 ..     494     519 ..     493     539 .. 0.77
   3 ?   -1.7   0.1       8.7   4.1e+03      47     104 ..     631     686 ..     610     688 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.043
      AAA_18   3 ltGtpGvGKttlakeLskr 21 
                 l G +GvGKt +a+ L+ r
  CTQ27301.1 213 LVGESGVGKTAIAEGLAWR 231
                 8899**********99866 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 0.00011
      AAA_18   3 ltGtpGvGKttlakeLskrlgf...g 25 
                  +G+ GvGKt+++  L+k lg+    
  CTQ27301.1 494 FAGPTGVGKTEVTVQLAKALGIellR 519
                 69*****************9654441 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 8.7
      AAA_18  47 deskrldedkldklldaleenssaleegknlvidghlaeleseaakdikk..vvLtaspe 104
                 de k++ ++   + ld++   +    + ++ vi +++ +++ e ++++    v L++s e
  CTQ27301.1 631 DEIKKIFTPEFRNRLDNIIWFD----HLSTTVIHQVVDKFIVELQVQLDQkgVSLEVSQE 686
                 4444444443333333322222....1233355555555554444444434488888777 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.3   1.1e+03       3      22 ..     212     231 ..     211     259 .. 0.85
   2 !   17.8   0.1   4.8e-06    0.0022       3     113 ..     493     610 ..     491     617 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.3
       AAA_3   3 llegvPGlaktllvkalaka 22 
                 ll g  G++kt +++ la  
  CTQ27301.1 212 LLVGESGVGKTAIAEGLAWR 231
                 677899*********99954 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 4.8e-06
       AAA_3   3 llegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfan........llladeinrappktqsalleameerqvtv 93 
                 l+ g  G++kt +  +lakal++e+ r  +   +    +  ++++ +    + f +G ++++        +ll dei++a p +   ll++m++ ++t 
  CTQ27301.1 493 LFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTV--SRLIGAPPGYVGFDQGGLLTDavikhphaVLLLDEIEKAHPDVFNLLLQVMDNGTLTD 589
                 667888*********************998766543322..344555555566666655543222223338999***********************97 PP

       AAA_3  94 e.gethklpepflvlatqnPi 113
                 + g++ ++ +  lv++t+  +
  CTQ27301.1 590 NnGRKADFRNVVLVMTTNAGV 610
                 516778899999999887665 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   9.3e-07   0.00044      37      77 ..     494     534 ..     468     537 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 9.3e-07
       AAA_6  37 paGpagtGKtEtvkdLakalakqvvvfncsdqldykslgki 77 
                  aGp+g GKtE + +Lakal+  ++ f+ s+ ++ ++++++
  CTQ27301.1 494 FAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHTVSRL 534
                 58********************************9999987 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00094      0.44      37      99 ..     212     277 ..     189     313 .. 0.76
   2 !    7.8   0.1    0.0048       2.3      36      55 ..     492     511 ..     472     517 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00094
      AAA_25  37 llaGapgtGKttlaldlalavatGkpwlg.....pvapeqgkVlyvsaEdsedelrrRlravgealrd 99 
                 ll+G +g+GKt++a  la  +++G+ +++      + +  +  l+  +  +  ++++R++a++++l++
  CTQ27301.1 212 LLVGESGVGKTAIAEGLAWRIVQGD-VPEvmadcTIYSLDIGSLLAGTKYRG-DFEKRFKALLKQLEQ 277
                 89********************998.66666766444556666666655555.888888888877743 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0048
      AAA_25  36 allaGapgtGKttlaldlal 55 
                  l+aG++g+GKt ++++la 
  CTQ27301.1 492 FLFAGPTGVGKTEVTVQLAK 511
                 589***************95 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.059        28       3      20 ..     212     229 ..     212     292 .. 0.89
   2 !   13.0   0.0   0.00018     0.084       3      32 ..     493     522 ..     492     632 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.059
      AAA_33   3 llvGlpGsGKstlaerll 20 
                 llvG +G+GK+  ae+l+
  CTQ27301.1 212 LLVGESGVGKTAIAEGLA 229
                 589************986 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00018
      AAA_33   3 llvGlpGsGKstlaerllkklgavllssdt 32 
                 l+ G+ G+GK+ +  +l+k+lg +ll+ d 
  CTQ27301.1 493 LFAGPTGVGKTEVTVQLAKALGIELLRFDM 522
                 799**********************99875 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.5     3e+03      42      71 ..      31      60 ..      26      67 .. 0.76
   2 ?    6.2   0.0     0.013       6.2      13      62 ..     198     248 ..     188     267 .. 0.73
   3 ?   -1.7   0.0       3.3   1.5e+03      40      94 ..     266     323 ..     253     330 .. 0.70
   4 !    6.7   0.1    0.0086       4.1      12      59 ..     472     530 ..     459     541 .. 0.57
   5 ?    4.6   0.0     0.039        19     106     158 ..     558     608 ..     540     654 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.5
  Mg_chelatase 42 lpsllpplseeealevakiasvagkkeeek 71
                  l +ll++ s +eale+ ++  va ++e e+
    CTQ27301.1 31 LLALLSNPSAREALEACSVDLVALRQELEA 60
                  678999999999999999988877555555 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.013
  Mg_chelatase  13 raleiaa.aGgHnlllvGppGsGKtmlakrlpsllpplseeealevakias 62 
                   ra+++     + n llvG +G GKt +a+ l+  + + +  e++   +i+s
    CTQ27301.1 198 RAIQVLCrRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 248
                   556554303456789*************99987666666666666666665 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3.3
  Mg_chelatase  40 krlpsllpplse..eealevakiasvag.kkeeekllkrrpfraphhsaskaalvGgg 94 
                   kr+++ll +l++  + +l + +i+++ g   ++ ++++++ + +p  s+ k+ ++G+ 
    CTQ27301.1 266 KRFKALLKQLEQdtNSILFIDEIHTIIGaGAASGGQVDAANLIKPLLSSGKIRVIGST 323
                   5677777776651134667777888777445566777777777887777777777765 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0086
  Mg_chelatase  12 kraleiaaaG...gH....nlllvGppGsGKtmlakrlpsll....pplseeealevak 59 
                    +a+++a aG   +H    ++l++Gp G GKt +  +l++ l     + +++e +e  +
    CTQ27301.1 472 TEAIKMARAGlghEHkpvgSFLFAGPTGVGKTEVTVQLAKALgielLRFDMSEYMERHT 530
                   356678888852223333359***********876665544410004444444444444 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.039
  Mg_chelatase 106 hnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNp 158
                    + vL+LDE+ + + +v++ L + +++g++t   + +k++f  ++ lv+++N 
    CTQ27301.1 558 PHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTD-NNGRKADFR-NVVLVMTTNA 608
                   578************************99874.445566775.5677777775 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.018       8.7       6      42 ..     195     231 ..     190     240 .. 0.75
   2 !   10.8   0.1   0.00079      0.37      21      46 ..     482     516 ..     449     523 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE   6 etealgkklakalgdvilLeGdLGaGKTtlvrglaka 42 
                 e+e++ + l +  ++  lL G+ G+GKT+++ gla  
  CTQ27301.1 195 ELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 231
                 555555555555577789*************999865 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00079
                 E.........EEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  21 v.........ilLeGdLGaGKTtlvrglakalgve 46 
                 +         +l+ G+ G+GKT  + +lakalg+e
  CTQ27301.1 482 LghehkpvgsFLFAGPTGVGKTEVTVQLAKALGIE 516
                 122234456699********************996 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.023        11       3      23 ..     213     233 ..     212     250 .. 0.85
   2 !    8.9   0.0    0.0041       1.9       2      25 ..     493     516 ..     492     533 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.023
  RNA_helicase   3 lyGpsgeGKStlakeLakall 23 
                   l+G+sg+GK+ +a+ La ++ 
    CTQ27301.1 213 LVGESGVGKTAIAEGLAWRIV 233
                   79************9997776 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0041
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkk 25 
                   ++ Gp+g+GK+ ++ +Lakal  +
    CTQ27301.1 493 LFAGPTGVGKTEVTVQLAKALGIE 516
                   588****************99754 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0026       1.2      77     120 ..     186     229 ..     166     242 .. 0.69
   2 ?    5.8   0.0     0.026        12     102     140 ..     492     530 ..     464     551 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0026
                  SEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  77 yevllvsaktkegleelkellkdktsvlvGqSGvGKStLinall 120
                  +++l+ ++k+ e + ++  + +++  +lvG+SGvGK+++ + l+
   CTQ27301.1 186 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA 229
                  555555555555555555555667889**********9987765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.026
                  EEEECSTTSSHHHHHHHHCTT-----S------------ CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelktgevseklgrGkhT 140
                   +++G++GvGK+ +  +l+  l ++      +    +hT
   CTQ27301.1 492 FLFAGPTGVGKTEVTVQLAKALGIELLRFDMSEYMERHT 530
                  689*********999999887766665555555555555 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.064        30       6      25 ..     215     234 ..     212     246 .. 0.78
   2 !    8.5   0.0    0.0042         2       6      24 ..     496     514 ..     492     522 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.064
                 SSTTSSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLaralar 25 
                 + +GvGKT +a +La  + +
  CTQ27301.1 215 GESGVGKTAIAEGLAWRIVQ 234
                 68*********999966555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0042
                 SSTTSSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLarala 24 
                 +  GvGKT +++ La+al 
  CTQ27301.1 496 GPTGVGKTEVTVQLAKALG 514
                 568*************996 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0066       3.1      21      38 ..     207     224 ..     198     230 .. 0.80
   2 ?    4.8   0.1     0.048        23      20      36 ..     487     503 ..     481     506 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0066
      AAA_29  21 lkgatlltGpsGsGKSTl 38 
                 +k++ ll+G+sG+GK+++
  CTQ27301.1 207 RKNNPLLVGESGVGKTAI 224
                 45589**********987 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.048
      AAA_29  20 dlkgatlltGpsGsGKS 36 
                 ++ g++l++Gp+G+GK+
  CTQ27301.1 487 KPVGSFLFAGPTGVGKT 503
                 455889**********7 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0006      0.28       4      34 ..     212     242 ..     211     256 .. 0.86
   2 ?   -0.2   0.0       1.7   8.1e+02       5      24 ..     494     513 ..     492     521 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0006
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCCCC- CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpqgaf 34 
                 +l Ge+G+GKT+ +++la  + +g+ p+++ 
  CTQ27301.1 212 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMA 242
                 589*********************9998764 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.7
                 EEC-TTTCHHHHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqklalaw 24 
                   G+ G+GKT    +la a+
  CTQ27301.1 494 FAGPTGVGKTEVTVQLAKAL 513
                 579*******9888887765 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.2   2.5e+03       5      22 ..     212     229 ..     211     234 .. 0.87
   2 ?   11.5   0.0   0.00031      0.14       4      33 ..     492     521 ..     489     527 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.2
         IPT   5 lifGatttGKtaeaikla 22 
                 l++G  ++GKta a  la
  CTQ27301.1 212 LLVGESGVGKTAIAEGLA 229
                 789*********998887 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00031
         IPT   4 ylifGatttGKtaeaiklaketgapvivlD 33 
                 +l  G+t++GKt+++++lak+ g+ ++  D
  CTQ27301.1 492 FLFAGPTGVGKTEVTVQLAKALGIELLRFD 521
                 5788*****************999887666 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.44   2.1e+02      38      66 ..     201     229 ..     193     276 .. 0.85
   2 ?    9.2   0.0    0.0022         1      46      74 ..     490     518 ..     464     528 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.44
       Rad17  38 dvLesrkkriLLisGPsGCgkstvvkvLs 66 
                 +vL +r+k+  L+ G sG gk+ + + L+
  CTQ27301.1 201 QVLCRRRKNNPLLVGESGVGKTAIAEGLA 229
                 7899999999999********99887776 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0022
       Rad17  46 riLLisGPsGCgkstvvkvLskelgiklr 74 
                    L +GP+G gk+ v   L+k lgi+l 
  CTQ27301.1 490 GSFLFAGPTGVGKTEVTVQLAKALGIELL 518
                 36899********************9875 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2     0.006       2.8      23      41 ..     212     230 ..     207     363 .. 0.89
   2 ?   -1.0   0.0       4.6   2.2e+03      59     118 ..     368     431 ..     320     477 .. 0.62
   3 ?    3.4   0.1       0.2        92      20      33 ..     490     503 ..     487     505 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.006
      AAA_23  23 lItGpNGaGKTTildAikl 41 
                 l++G+ G GKT+i + + +
  CTQ27301.1 212 LLVGESGVGKTAIAEGLAW 230
                 799**************99 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 4.6
      AAA_23  59 eksdveiesegkvkayveltfenkdgry.....trsiererelskkkgkttkkaklelleidele 118
                  ++dv+ +  + v+a vel ++++++r       + i++   +++ + ++++k++ +  +i+   
  CTQ27301.1 368 AHHDVRYTA-KAVRAAVELAVKYINDRHlpdkaIDVIDEAGARARLMPVSKRKKTVNVADIESVV 431
                 455555333.4677778888888888777777744444455555555555555544444444433 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.2
      AAA_23  20 gltlItGpNGaGKT 33 
                 g +l+ Gp+G GKT
  CTQ27301.1 490 GSFLFAGPTGVGKT 503
                 779**********9 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       7.3   3.5e+03     132     183 ..      79     133 ..      78     145 .. 0.60
   2 ?    4.3   0.0     0.044        21      13      45 ..     205     236 ..     193     244 .. 0.75
   3 ?   -1.1   0.1         2   9.4e+02     126     185 ..     319     375 ..     316     386 .. 0.80
   4 ?   -2.0   0.1       3.9   1.8e+03     127     164 ..     377     423 ..     351     435 .. 0.68
   5 ?    5.0   0.0     0.028        13      18      58 ..     491     529 ..     478     539 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7.3
  Zeta_toxin 132 kkelSrlgvldRyeeevae.gR..lvpkeehdeafeglresvealeeekqldrvk 183
                 ++ lS ++vl+R    v++ gR  ++  ++  ++f++ +++++ l +++ ++r+ 
  CTQ27301.1  79 QPTLSFQRVLQRAVFHVQSsGRseVTGANVLVAIFSEQESQAAYLLRKHEVSRLD 133
                 6778888888888777555455223445555555555555555555555555554 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.044
  Zeta_toxin  13 qerPklillgGqpGAGKselaellkdelerqgn 45 
                 ++r+   ll+G +G GK+++ae l+ ++  qg+
  CTQ27301.1 205 RRRKNNPLLVGESGVGKTAIAEGLAWRIV-QGD 236
                 56666779*************99887763.555 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2
  Zeta_toxin 126 vvvvavkkelSrlgvldRyeeevaegRlvpkeehdeafeglresvealeeekqldrvk.ik 185
                 v+  ++ +e+S  + +dR +++    R+ ++++ + ++e+  + ++ l+ ++ + +++ ++
  CTQ27301.1 319 VIGSTTYQEFSNIFEKDRALAR----RFQKIDITEPSVEETVQIINGLKPKYEAHHDVrYT 375
                 6666778899999999999999....99999999999999999999999999776665354 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 3.9
  Zeta_toxin 127 vvvavkkelSrlgvldRyeee..vae........gRlvpkeehdeafe 164
                  +v +  el+++ + dR++ +  +          +Rl+p+++ +++++
  CTQ27301.1 377 KAVRAAVELAVKYINDRHLPDkaI-DvideagarARLMPVSKRKKTVN 423
                 456666777777888887777441.13444666567777777776665 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.028
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrldpDdlRelh 58 
                 + l +G +G GK+e+   l+++l  + + +r+d  ++ e+h
  CTQ27301.1 491 SFLFAGPTGVGKTEVTVQLAKAL--GIELLRFDMSEYMERH 529
                 4577******************9..8999999998888887 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.8   1.3e+03      23      44 ..     212     233 ..     197     245 .. 0.83
   2 ?   -2.2   0.1       6.7   3.2e+03      82     115 ..     397     430 ..     356     437 .. 0.70
   3 ?    7.9   0.0    0.0052       2.5      20      43 ..     490     513 ..     463     519 .. 0.78
   4 ?   -0.6   0.0       2.1   9.8e+02     104     128 ..     559     583 ..     551     586 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.8
  DNA_pol3_delta2  23 LfeGdegigkkelalnlakall 44 
                      L+ G++g+gk ++a  la +++
       CTQ27301.1 212 LLVGESGVGKTAIAEGLAWRIV 233
                      899***********99998776 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.7
  DNA_pol3_delta2  82 sikldqirelieelsrkpreskkkiiiiedaekm 115
                         +d i e  +++  +p+  +kk + + d+e +
       CTQ27301.1 397 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESV 430
                      4567888899999999999999999988888875 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0052
  DNA_pol3_delta2  20 hayLfeGdegigkkelalnlakal 43 
                       ++Lf+G++g+gk e++ +lakal
       CTQ27301.1 490 GSFLFAGPTGVGKTEVTVQLAKAL 513
                      589*******************98 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 2.1
  DNA_pol3_delta2 104 kkiiiiedaekmtksAaNalLktlE 128
                      + +++++++ek ++   N lL+++ 
       CTQ27301.1 559 HAVLLLDEIEKAHPDVFNLLLQVMD 583
                      568999***************9875 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.04        19      11      54 ..     215     258 ..     210     285 .. 0.85
   2 ?    5.5   0.0     0.021        10      11      28 ..     496     513 ..     492     520 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.04
        ParA  11 gKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgve 54 
                 g  GVGK+ +a  lA+ + + ++   + D  iy  +i +ll  +
  CTQ27301.1 215 GESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT 258
                 778*****************999999999999999998888655 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.021
        ParA  11 gKGGVGKStvavnlAlaL 28 
                 g  GVGK+ v+v+lA aL
  CTQ27301.1 496 GPTGVGKTEVTVQLAKAL 513
                 667************998 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.065        31       4      27 ..     211     234 ..     208     248 .. 0.81
   2 ?    6.0   0.2     0.018       8.5       4      25 ..     492     513 ..     490     518 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.065
                 EEEEESTTSSHHHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaallkk 27 
                  llvG  G+GKT  +  La ++ +
  CTQ27301.1 211 PLLVGESGVGKTAIAEGLAWRIVQ 234
                 58***********99999977665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.018
                 EEEEESTTSSHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaall 25 
                 +l++G++G+GKT  + +La+ l
  CTQ27301.1 492 FLFAGPTGVGKTEVTVQLAKAL 513
                 699***************9875 PP

>> CHAD  CHAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3       8.2   3.9e+03      92     132 ..      42      62 ..       7     127 .. 0.51
   2 ?   11.5   0.0   0.00045      0.21     150     193 ..     338     388 ..     173     408 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 8.2
                 GGGHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH CS
        CHAD  92 ealerllkrlekerkrararvlaaLdsaryqalldaldall 132
                 eale+++ +l + r                    ++l+a++
  CTQ27301.1  42 EALEACSVDLVALR--------------------QELEAFI 62 
                 33333333333332....................2222222 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00045
                 HHHHHHHH.HHHH--.............------THHHHHHHHHHHHHHHHHHHHGG CS
        CHAD 150 lrkayrklekraaka.............eadesdeealHelRkaaKrlRYaaeafap 193
                 l+++++k+      +                +++ ea+H++R  aK +R a+e++ +
  CTQ27301.1 338 LARRFQKI------DitepsveetvqiiNGLKPKYEAHHDVRYTAKAVRAAVELAVK 388
                 34444443......022233466666664446789******************9843 PP

>> Hpr_kinase_C  HPr Serine kinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.031        15      22      39 ..     212     229 ..     210     245 .. 0.84
   2 ?    4.3   0.0     0.054        26      22      52 ..     493     524 ..     488     542 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.031
                   EEEESTCHHHHHHHHHHH CS
  Hpr_kinase_C  22 LitGesgvGKselaleLi 39 
                   L++GesgvGK+ +a  L 
    CTQ27301.1 212 LLVGESGVGKTAIAEGLA 229
                   89*********9998774 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.054
                   EEEESTCHHHHHHHHHHHTT.T-EEEEESSEE CS
  Hpr_kinase_C  22 LitGesgvGKselaleLikr.ghrLvaDDave 52 
                   L  G  gvGK+e++++L k  g  L+  D+ e
    CTQ27301.1 493 LFAGPTGVGKTEVTVQLAKAlGIELLRFDMSE 524
                   789*************9874366666655555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1     0.012       5.4       3      37 ..     191     225 ..     189     234 .. 0.80
   2 ?    2.3   0.0      0.28   1.3e+02     101     143 ..     263     309 ..     250     318 .. 0.70
   3 ?   -2.3   0.0       7.3   3.5e+03      70     126 ..     346     405 ..     316     410 .. 0.63
   4 ?   -0.5   0.0       2.1   9.8e+02      27      42 ..     496     511 ..     486     521 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.012
    ATPase_2   3 dRekelke.leeilerepneiyfiYGpegsGKtaLl 37 
                  Rekel++ ++ +++r +n+++++ G  g+GKta+ 
  CTQ27301.1 191 GREKELERaIQVLCRRRKNNPLLV-GESGVGKTAIA 225
                 5*****863777788888888776.********976 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.28
    ATPase_2 101 lvfkaielllekikkkgkkiiiiiDelqklidlgln.....gaellvk 143
                 + +k +++ll++++++ +  i++iDe+  +i  g        a++l+k
  CTQ27301.1 263 DFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAAsggqvDAANLIK 309
                 5667778888888887.5589999**9999965554555444555555 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 7.3
    ATPase_2  70 e.eeeekkklekalgiavpkaeleeilkeksklvfkaielllekikkkgkk..iiiiiDe 126
                 + +e ++++  + ++   pk e+++ +  + k v +a+el+ + i+++      i +iDe
  CTQ27301.1 346 DiTEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPdkAIDVIDE 405
                 244455555556666666666665555577788888888888888887654435556665 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 2.1
    ATPase_2  27 GpegsGKtaLlkeiie 42 
                 Gp g+GKt +  ++++
  CTQ27301.1 496 GPTGVGKTEVTVQLAK 511
                 9*******99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              38  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 4876.64
//
Query:       CTQ27302.1  [L=72]
Description: protein chain initiation factor IF-1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-28   96.0   0.0    8.9e-28   95.9   0.0    1.0  1  eIF-1a         Translation initiation factor 1A / IF-1
      3e-05   23.7   0.0    3.7e-05   23.4   0.0    1.3  1  RsgA_N         RsgA N-terminal domain
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.035   14.1   0.0    1.8  1  RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
      0.027   14.8   0.1      0.033   14.5   0.1    1.2  1  S1             S1 RNA binding domain
      0.053   13.4   0.0        5.2    7.0   0.0    2.3  2  Myosin_N       Myosin N-terminal SH3-like domain
        0.1   12.8   0.1          5    7.4   0.0    2.6  3  CSD2           Cold shock domain


Domain annotation for each model (and alignments):
>> eIF-1a  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0     3e-31   8.9e-28       1      64 []       7      70 ..       7      70 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 3e-31
                EEEEEEEEEEETTTEEEEEE.SSSSBEEEEE-HHHH.CT----TT-EEEEEE-TT-TTEEEEES- CS
      eIF-1a  1 gevigkViealgnnlfrVelpdngkevlaeipgkfR.nkiwikrGdyVlVelspydltkGrIvyr 64
                +e+ g+V+e l+n +frVel +ng+ v+a+i+gk+R n+i+i+ Gd+V+Vel+pydl+kGrIv+r
  CTQ27302.1  7 IEMQGTVLETLPNTMFRVEL-ENGHVVTAHISGKMRkNYIRILTGDKVTVELTPYDLSKGRIVFR 70
                699*****************.59****************************************98 PP

>> RsgA_N  RsgA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.2e-08   3.7e-05       9      47 ..      19      58 ..      10      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.2e-08
      RsgA_N  9 sgfYyVk.eegeiyecRaRGkFRkkkisplVGDrVefele 47
                + ++ V+ e+g+++++ + Gk Rk+ i++l GD+V +el+
  CTQ27302.1 19 NTMFRVElENGHVVTAHISGKMRKNYIRILTGDKVTVELT 58
                46899996788*************************9986 PP

>> RNase_II_C_S1  RNase II-type exonuclease C-terminal S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.2e-05     0.035      36      57 ..      49      70 ..       8      72 .] 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
  RNase_II_C_S1 36 lGervrVrLveADvatrrvrFe 57
                    G++v+V+L+  D+ ++r+ F+
     CTQ27302.1 49 TGDKVTVELTPYDLSKGRIVFR 70
                   59*******************7 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.1e-05     0.033       8      72 ..       9      69 ..       3      72 .] 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-05
                EEEEEEEEET.TEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEE CS
          S1  8 veGeVtsvtk.gGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriil 72
                ++G+V +  +   ++Vel+ng+ +  ++s  +r+     ++ ++  Gd+v v+++  d  ++ri++
  CTQ27302.1  9 MQGTVLETLPnTMFRVELENGHVVTAHISGKMRK-----NYIRILTGDKVTVELTPYDLSKGRIVF 69
                677777777668899****888888888877777.....*************************98 PP

>> Myosin_N  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.01        31      16      38 ..      11      34 ..       9      36 .. 0.76
   2 ?    7.0   0.0    0.0017       5.2      22      31 ..      49      58 ..      45      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.01
                EEEEEEESSE.EEEEETTSEEEEE CS
    Myosin_N 16 GeIkeeeGdk.vtVetedGktvtV 38
                G++ e+  ++ + Ve+e+G  vt 
  CTQ27302.1 11 GTVLETLPNTmFRVELENGHVVTA 34
                6667666655599******99996 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0017
                ESSEEEEEET CS
    Myosin_N 22 eGdkvtVete 31
                +GdkvtVe++
  CTQ27302.1 49 TGDKVTVELT 58
                7*******85 PP

>> CSD2  Cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.26   7.7e+02      41      51 ..       6      18 ..       2      23 .. 0.72
   2 ?    2.0   0.0     0.077   2.3e+02      22      35 ..      25      38 ..      16      47 .. 0.79
   3 ?    7.4   0.0    0.0017         5      25      46 ..      49      67 ..      40      69 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.26
        CSD2 41 n..peGevievLG 51
                n  ++G+v+e L 
  CTQ27302.1  6 NieMQGTVLETLP 18
                3449999999985 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.077
        CSD2 22 gakdGdkVvveite 35
                ++++G++V ++i  
  CTQ27302.1 25 ELENGHVVTAHISG 38
                5789******9986 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0017
        CSD2 25 dGdkVvveiteypdkknpeGev 46
                +GdkV ve+t y+  k   G++
  CTQ27302.1 49 TGDKVTVELTPYDLSK---GRI 67
                7*********997433...555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 550.30
//
Query:       CTQ27303.1  [L=233]
Description: leucyl/phenylalanyl-tRNA-protein transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-71  238.0   0.0    4.6e-71  237.8   0.0    1.0  1  Leu_Phe_trans  Leucyl/phenylalanyl-tRNA protein transferase


Domain annotation for each model (and alignments):
>> Leu_Phe_trans  Leucyl/phenylalanyl-tRNA protein transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.8   0.0   2.6e-75   4.6e-71       1     169 []      35     203 ..      35     203 .. 0.97

  Alignments for each domain:
  == domain 1  score: 237.8 bits;  conditional E-value: 2.6e-75
  Leu_Phe_trans   1 perlleayaqgifpwaeeeepilwwspdpRavleldelhisrslrktlrkkefevtidkaFeeVieacaekkrregtWiteeiieaYteLheagla 96 
                    p+rll ay++gifpw++ ++pilwwspdpRavl ++++h+srs++++ +++ ++vt+++aF eVie+ca+  r+egtWit++i++aY +Lhe+g+a
     CTQ27303.1  35 PARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPEQFHLSRSMKRFHQRSPYRVTLNHAFGEVIEGCAS-DRDEGTWITSSIVRAYHQLHELGHA 129
                    579******************************************************************6.4667********************* PP

  Leu_Phe_trans  97 hSvEvw.egeLvGGlyGvalgkvffgeSmFsrksdaSkvalvalvellkekgfeliDcqvetphlaslGakeis 169
                    hS+Evw e++LvGG+yGva g++f+geSmFsr+++aSk+al+ +++ ++++g +liDcqv ++h+aslGa++i+
     CTQ27303.1 130 HSIEVWqENTLVGGMYGVAQGALFCGESMFSRAENASKTALLVFCQDFAHSGGKLIDCQVLNNHTASLGAVDIP 203
                    ******888*************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1876.25
//
Query:       CTQ27304.1  [L=573]
Description: fused cysteine transporter subunits of ABC superfamily: membrane component; ATP-binding component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-33  116.0   0.1    3.9e-33  114.9   0.0    1.6  1  ABC_tran       ABC transporter
    3.9e-11   43.1   6.1    1.2e-10   41.5   6.0    1.7  1  ABC_membrane   ABC transporter transmembrane region
    6.1e-07   29.5   1.2     0.0048   16.8   0.3    2.2  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    8.9e-05   22.0   0.0     0.0071   15.8   0.0    2.2  2  SMC_N          RecF/RecN/SMC N terminal domain
    0.00027   21.1   0.0    0.00049   20.3   0.0    1.3  1  DUF87          Helicase HerA, central domain
    0.00039   20.9   1.0     0.0012   19.3   1.0    1.8  1  AAA_16         AAA ATPase domain
     0.0024   17.8   0.3      0.013   15.4   0.0    2.2  2  NACHT          NACHT domain
     0.0092   16.1   0.0      0.022   14.8   0.0    1.6  1  MMR_HSR1       50S ribosome-binding GTPase
     0.0099   16.2   0.5      0.048   13.9   0.5    2.2  1  AAA_22         AAA domain
  ------ inclusion threshold ------
      0.012   15.0   0.0      0.041   13.2   0.0    1.8  2  FtsK_SpoIIIE   FtsK/SpoIIIE family
      0.022   14.7   0.0       0.05   13.5   0.0    1.5  1  RsgA_GTPase    RsgA GTPase
      0.036   13.8   0.0      0.097   12.4   0.0    1.7  1  AAA_29         P-loop containing region of AAA domain
      0.051   14.1   0.1      0.098   13.1   0.1    1.4  1  AAA_23         AAA domain
      0.058   13.0   0.0       0.17   11.5   0.0    1.8  1  AAA_25         AAA domain
      0.063   13.0   0.0       0.15   11.7   0.0    1.6  1  AAA_30         AAA domain
        0.1   12.6   0.0       0.26   11.3   0.0    1.7  1  AAA_5          AAA domain (dynein-related subfamily)
        2.9    8.0   6.0        1.7    8.7   3.1    2.0  2  DUF4337        Domain of unknown function (DUF4337)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.0   3.7e-36   3.9e-33       1     136 [.     356     502 ..     356     503 .. 0.93

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 3.7e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdeeiekalskl 92 
                 l+n+sl++ +ge +ai+G++G+GKStLl+ll++  +p +Geill++++l+  ++  lr+ ++v+pq  +lf+ + +r+n       ++d+++++ l+k+
  CTQ27304.1 356 LENISLQIAAGEHIAILGRTGCGKSTLLQLLTRAWDPSQGEILLNNQPLSGLSEATLRQAMSVVPQRVHLFSAT-LRDNlllaapeADDAHLSATLEKV 453
                 78***********************************************************************9.**********98999999999999 PP

                 TTGG.....TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  93 glke.....lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 gl++       +  +++++++LSgG+ +r+a+arall +++l+llDEpt
  CTQ27304.1 454 GLEKllqdgGLNGWLGEGGRQLSGGELRRLAIARALLHDAPLMLLDEPT 502
                 9999544444444566667*****************************9 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   6.0   1.1e-13   1.2e-10       6     268 ..      26     287 ..      18     291 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1.1e-13
                   HHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHH CS
  ABC_membrane   6 llailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGells 102
                   ++++la +  +  + ++ +   ++ + g  ++ +  + +  + ++++++++  ++   + + +  r+  +lr  +f k+l ++ +   + + Gell+
    CTQ27304.1  26 IVTLLASIGLLTLSGWFLSASAVVGVAGIYSF-NYMLPAAGVRGAAIIRTAGRYFERLVSHDATFRVLQHLRVFTFSKLLPLSPAGLARFRQGELLN 121
                   45555666666677777777777777677777.77888888889999999999999888888999******************************** PP

                   HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTT CS
  ABC_membrane 103 rltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvs.aviakilkklkkkeqkavakassvaeEslsgirtVkafgr 198
                   r+  dv++l+ ++ + ++ ++ +l+++v++ + + +l + l+l l +i++  +lv+  ++ +  k++ + + + +++  + ++  l+g   +  f++
    CTQ27304.1 122 RVVADVDTLDHLYLRVISPLVGALVVIVVVTCGLSLLDVTLALTLGGIMLATLLVMpPLFYRAGKPAGESMTQLRGQYRQQLTAWLQGQAELMVFNA 218
                   *******************************************98888887777763699************************************* PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHH CS
  ABC_membrane 199 eeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfa 268
                    ++++ + ek   +++ a+++ a +++l+++++ l+g ++++ +lw+++  v  g+ ++g l+++ ++ a
    CTQ27304.1 219 SDRYRAQMEKTELSWQDAQRRQAELTALSQAVMLLIGGIAVVSMLWLASDGV-GGNSQPGALIALFVFCA 287
                   *************************************************999.67899999999888865 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00019       0.2       3      24 ..     370     391 ..     369     414 .. 0.75
   2 !   16.8   0.3   4.5e-06    0.0048     235     297 ..     473     531 ..     473     534 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
      AAA_21   3 vliGpNgsGKSnLLdaldllar 24 
                 ++ G+ g+GKS+LL++l  +++
  CTQ27304.1 370 AILGRTGCGKSTLLQLLTRAWD 391
                 799**************88874 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 4.5e-06
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 r+lS G +r la++ all ++   +l l+DEp  gL+ +  + +l ll +  r +  v+++TH
  CTQ27304.1 473 RQLSGGELRRLAIARALLHDA---PLMLLDEPTEGLDAATESQILHLLADVMR-DKTVLMVTH 531
                 58999*****9*******999...**************999999999999989.99******9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.026        28      25      42 ..     367     384 ..     355     390 .. 0.83
   2 !   15.8   0.0   6.7e-06    0.0071     123     209 ..     446     543 ..     396     551 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.026
                 SEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlld 42 
                 ++ ai+G+ G+GKs ll+
  CTQ27304.1 367 EHIAILGRTGCGKSTLLQ 384
                 5789**********9985 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 6.7e-06
                 HHHHHHCTT-STT...............CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-S CS
                 xxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiske...............lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekad 206
                 +s  le++g++k                +LSgGe   +a+    A    + apl+llDe    LD++  +++ +ll     +  ++++++r + l+  +
  CTQ27304.1 446 LSATLEKVGLEKLlqdgglngwlgeggrQLSGGELRRLAI----ARALLHDAPLMLLDEPTEGLDAATESQILHLLADVMRDKTVLMVTHRLRGLAGFN 540
                 55555555555556666666667777779****9765444....4445789***************************************988777776 PP

                 CEE CS
                 xxx RF
       SMC_N 207 klv 209
                 +++
  CTQ27304.1 541 QII 543
                 665 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   4.6e-07   0.00049      23      45 ..     366     388 ..     357     394 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4.6e-07
       DUF87  23 trHlAilgsTGsGKSntvavLle 45 
                  +H+Ailg+TG GKS++  +L +
  CTQ27304.1 366 GEHIAILGRTGCGKSTLLQLLTR 388
                 68****************99976 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.0   1.1e-06    0.0012      22     163 ..     366     522 ..     354     529 .. 0.51

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.1e-06
      AAA_16  22 grpelvllsGesGvGKsslvrellralekd..ggiflrgkcdqlesaipysalaqalareellrqllde.aesaeleawrekleeala........... 106
                 g  e + + G  G+GKs+l++ l ra+  +  ++++ ++    l++a+ ++a   +  r +l+ + l++ +  a++ea++++l ++l+           
  CTQ27304.1 366 G--EHIAILGRTGCGKSTLLQLLTRAWDPSqgEILLNNQPLSGLSEATLRQAMSVVPQRVHLFSATLRDnLLLAAPEADDAHLSATLEkvglekllqdg 462
                 3..7899*********************99432222222222223332222222222233444333333211222222222222222244456666666 PP

      AAA_16 107 ........avpelagaeasrllellkrll.allsrderplvlvlDdlqwadeaslql.laaLlrlle 163
                          +++l+g e +rl       + a++  ++ pl l+ +  + +d+a+ +  l +L++ + 
  CTQ27304.1 463 glngwlgeGGRQLSGGELRRL-------AiARALLHDAPLMLLDEPTEGLDAATESQiLHLLADVMR 522
                 666665555555555444443.......333333346667777777778888777774555555444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.2e-05     0.013       3      27 ..     369     393 ..     367     399 .. 0.89
   2 ?   -1.3   0.0       1.8   1.9e+03      91     131 ..     499     535 ..     481     544 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
                 EEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaeg 27 
                 +++ G+ G+GK+tLlq l +aw  +
  CTQ27304.1 369 IAILGRTGCGKSTLLQLLTRAWDPS 393
                 789*******************765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.8
                 TT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCC CS
       NACHT  91 DelvtdlgqkekqpvrtlLselirkkllpeasllltvrpra 131
                 De  + l++    +++  + +l+   +  ++ l++t r r+
  CTQ27304.1 499 DEPTEGLDA----ATESQILHLLADVMRDKTVLMVTHRLRG 535
                 555555555....3444555666666666888888887665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.1e-05     0.022       1      22 [.     368     389 ..     368     407 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.1e-05
                 EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge 22 
                 ++ai+Gr+  GKStL++ lt++
  CTQ27304.1 368 HIAILGRTGCGKSTLLQLLTRA 389
                 59*****************985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.5   4.5e-05     0.048       6      30 ..     367     391 ..     364     562 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.5e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqld 30 
                  ++++ G +G+GK+tll+ l++  d
  CTQ27304.1 367 EHIAILGRTGCGKSTLLQLLTRAWD 391
                 5899***************998653 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.9e-05     0.041      32      59 ..     360     386 ..     345     388 .. 0.84
   2 ?   -2.6   0.0       2.7   2.8e+03     106     139 ..     511     544 ..     505     553 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.9e-05
                   EEEGGGS-.SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  32 vldlkkmashllvaGatgsGKStalntL 59 
                    l+++  + h+ ++G+tg GKSt l+ L
    CTQ27304.1 360 SLQIAAGE-HIAILGRTGCGKSTLLQLL 386
                   45566666.****************966 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.7
                   HHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHH CS
  FtsK_SpoIIIE 106 lraleeLvkemeeryalfreagvrsiaaydgeia 139
                   +++l  L + m++   l+  ++ r +a++++ i 
    CTQ27304.1 511 SQILHLLADVMRDKTVLMVTHRLRGLAGFNQIIV 544
                   6778889999999999999999999999988765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.8e-05      0.05      90     128 ..     356     395 ..     330     403 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.8e-05
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpelelktg 128
                  le+++ +++  + ++++G +G GKStL+  l+   + + g
   CTQ27304.1 356 LENISLQIAAgEHIAILGRTGCGKSTLLQLLTRAWDPSQG 395
                  566666666559999**************99877665555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.2e-05     0.097      18      40 ..     362     384 ..     356     401 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.2e-05
      AAA_29  18 eidlkgatlltGpsGsGKSTllD 40 
                 +i   + + + G++G GKSTll 
  CTQ27304.1 362 QIAAGEHIAILGRTGCGKSTLLQ 384
                 555444899************95 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   9.3e-05     0.098      22      41 ..     369     388 ..     357     390 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.3e-05
      AAA_23  22 tlItGpNGaGKTTildAikl 41 
                  +I G +G+GK+T+l+ ++ 
  CTQ27304.1 369 IAILGRTGCGKSTLLQLLTR 388
                 58*************99885 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00016      0.17      18      57 ..     351     390 ..     336     452 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
      AAA_25  18 pppprrwlvkgllpagelallaGapgtGKttlaldlalav 57 
                 +p p    +   ++age +++ G++g+GK+tl+  l  a+
  CTQ27304.1 351 QPSPALENISLQIAAGEHIAILGRTGCGKSTLLQLLTRAW 390
                 444444466666799*****************99888776 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.15      20      50 ..     368     398 ..     358     454 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrvi 50 
                   ++ G+ G GK+t+l+ l++aw+ ++g+++
  CTQ27304.1 368 HIAILGRTGCGKSTLLQLLTRAWDPSQGEIL 398
                 46789******************99865554 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00025      0.26       2      47 ..     369     418 ..     368     430 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--T...T--HHHHH--B-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltr...dtteedlkgrrei 47 
                 + ++G +G+gKs+l + l +a   ++ e+ ++++   +++e++l++ +++
  CTQ27304.1 369 IAILGRTGCGKSTLLQLLTRAWdPSQGEILLNNQplsGLSEATLRQAMSV 418
                 5689*****************97666666555542225566666666665 PP

>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.1    0.0016       1.7     122     157 ..      22      57 ..       9      60 .. 0.87
   2 ?   -1.5   0.0       2.3   2.5e+03     114     130 ..     240     259 ..     192     271 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0016
     DUF4337 122 alLqiaIvlaaialltkkklllylslvlglvGlvlf 157
                 ++L i  +la+i llt + ++l +s v+g++G++ f
  CTQ27304.1  22 VVLAIVTLLASIGLLTLSGWFLSASAVVGVAGIYSF 57 
                 67999999************************9976 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.3
     DUF4337 114 sdk...fdlasalLqiaIvl 130
                 + +     +a++lL  +I++
  CTQ27304.1 240 QAEltaLSQAVMLLIGGIAV 259
                 22233344444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 3969.58
//
Query:       CTQ27305.1  [L=588]
Description: fused cysteine transporter subunits of ABC superfamily: membrane component; ATP-binding component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-47  162.3   3.5    2.3e-47  161.9   3.5    1.1  1  ABC_membrane  ABC transporter transmembrane region
      2e-25   89.9   0.0    3.7e-25   89.0   0.0    1.4  1  ABC_tran      ABC transporter
      6e-06   26.3   2.9        0.1   12.4   0.2    3.0  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    5.4e-05   23.6   1.2    0.00012   22.5   0.7    1.8  2  AAA_16        AAA ATPase domain
    8.1e-05   22.2   0.1       0.14   11.5   0.0    2.4  2  SMC_N         RecF/RecN/SMC N terminal domain
    0.00014   21.8   0.0    0.00032   20.7   0.0    1.6  1  RsgA_GTPase   RsgA GTPase
    0.00071   19.9   0.0     0.0037   17.5   0.0    2.2  1  AAA_22        AAA domain
     0.0042   16.4   0.0     0.0065   15.8   0.0    1.3  1  AIG1          AIG1 family
     0.0047   17.0   0.5     0.0083   16.2   0.5    1.4  1  Dynamin_N     Dynamin family
     0.0051   16.9   0.2      0.011   15.8   0.2    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
     0.0089   15.8   0.0      0.022   14.5   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
  ------ inclusion threshold ------
       0.02   14.2   0.0      0.037   13.3   0.0    1.3  1  Zeta_toxin    Zeta toxin
      0.023   13.8   1.8      0.038   13.1   1.8    1.2  1  ICE2          ICE2
      0.039   13.0   0.0      0.085   11.9   0.0    1.5  1  T2SSE         Type II/IV secretion system protein
      0.042   13.2   0.0      0.075   12.4   0.0    1.3  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.061   12.1   0.0       0.34    9.7   0.0    1.9  2  ABC_ATPase    Predicted ATPase of the ABC class
      0.076   12.6   0.0       0.26   10.8   0.0    2.1  1  AAA_25        AAA domain
      0.089   12.3   0.0       0.15   11.5   0.0    1.3  1  AAA_7         P-loop containing dynein motor region
      0.092   13.0   0.0       0.19   11.9   0.0    1.5  1  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.097   12.4   0.0       0.17   11.6   0.0    1.4  1  AAA_24        AAA domain
       0.12   12.6   0.2       0.51   10.5   0.2    2.1  1  AAA_33        AAA domain


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.9   3.5   2.7e-50   2.3e-47       2     271 ..      25     292 ..      24     295 .. 0.98

  Alignments for each domain:
  == domain 1  score: 161.9 bits;  conditional E-value: 2.7e-50
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHH CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvG 98 
                   +++ ll +++g+l ++++++l+ril  +++ + p t al + ++ll+l++++++++++l++++   +g++++ ++rr++++++ ++  ++++ +++G
    CTQ27305.1  25 MISRLLGVASGLLIVAQAWFLARILHRMVMENIPAT-ALLLPLTLLVLIFVLRAWVVWLRERVGFQAGQHIRYEIRRQVLDRLQQAGPAWIQGKPAG 120
                   6888999*****************************.************************************************************ PP

                   HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH CS
  ABC_membrane  99 ellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVka 195
                   ++ +++ +++++++d +++ l +++ + ++ + ++i +f ++w  +l+ll+++pli l++a++++   ++++++ +a+a++s ++ + l+g++t+++
    CTQ27305.1 121 SWATLILEQIDDMHDYYARYLPQMTLAACVPLLIVITIFPINWAAALILLGTAPLIPLFMALVGMGAADANRRNFQALARLSGHFLDRLRGMETLRI 217
                   ************************************************************************************************* PP

                   TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHTTSSTHHHHHHHHHHHHHHH CS
  ABC_membrane 196 fgreeyflekfekaleeakkagikkaianglligitqllgllsyalal.wfGttlvisgelsvgdlvvflslfailf 271
                   f r +++++++ +a+++++++++ +++++ l++g+++++++ls+al++ +fG+++   gel++g + + ++l+a ++
    CTQ27305.1 218 FHRGQAETDNIRDASQDFRQRTMEVLRLAFLSSGVLEFFTSLSIALVAvYFGFSYL--GELNFGHYGAGVTLMAGFL 292
                   **********************************************999*******..***************9765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0   4.3e-28   3.7e-25       4     136 ..     369     513 ..     367     514 .. 0.89

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 4.3e-28
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHTCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................esdeeie 86 
                 +++ l +g +v++vG++G+GKS+Ll++l+g l p eG++ ++g +l+e + e++r+ ++++ q+pql   + +ren                 ++++++
  CTQ27305.1 369 LNFALPAGARVVLVGQSGSGKSSLLNTLLGFL-PYEGSLMVNGVELRELDAERWRRLLSWVGQNPQLPAAT-LRENvllawpeaseaqlrlaLDKAWVS 465
                 799****************************8.79*****************************9998887.********9995555555555555577 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++ l +    +t v++++  LS Gq qr+a+arall   +llllDEp 
  CTQ27305.1 466 EFIALLPQGI--HTAVGDQAGRLSVGQAQRIAVARALLVPCRLLLLDEPA 513
                 7777766555..99999********************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.68   5.8e+02     219     253 ..     240     297 ..     187     299 .. 0.56
   2 !   12.3   0.0   0.00013      0.11       3      22 ..     380     399 ..     379     425 .. 0.84
   3 !   12.4   0.2   0.00012       0.1     240     298 ..     489     543 ..     444     548 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.68
      AAA_21 219 r.......................gvvflengdgqelparelSdGtkrllalltallr 253
                                           v++  ++ +el++ + + G+  ++++lt++l+
  CTQ27305.1 240 MevlrlaflssgvlefftslsialVAVYFGFSYLGELNFGHYGAGVTLMAGFLTLILA 297
                 1333333333444444455555556778888888888888888888888888888875 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00013
      AAA_21   3 vliGpNgsGKSnLLdaldll 22 
                 vl+G  gsGKS+LL +l ++
  CTQ27305.1 380 VLVGQSGSGKSSLLNTLLGF 399
                 9****************776 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00012
      AAA_21 240 GtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv.iltTHS 298
                 G+ + +a++ all  +   +lll+DEp ++L+ +   r+++ l  +s+   Q  +l+TH+
  CTQ27305.1 489 GQAQRIAVARALLVPC---RLLLLDEPAASLDAHSEQRVMQALTHASS--EQTtLLVTHQ 543
                 4444447777777777...************************99999..6666888886 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       8.7   7.4e+03      43      75 ..     101     125 ..      92     155 .. 0.64
   2 !   22.5   0.7   1.4e-07   0.00012      26     162 ..     378     532 ..     369     544 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 8.7
      AAA_16  43 ellralekdggiflrgkcdqlesaipysalaqa 75 
                 ++l++l+++g  +++gk   +        +a++
  CTQ27305.1 101 QVLDRLQQAGPAWIQGKPAGS--------WATL 125
                 445555555555555555544........4433 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 1.4e-07
      AAA_16  26 lvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde.aesaeleawrekleeala................. 106
                  v+l+G+sG+GKssl+++ll  l  +g + ++g   +    +    + ++l++ +   ql ++ ++++ l aw+e+ e++l+                 
  CTQ27305.1 378 RVVLVGQSGSGKSSLLNTLLGFLPYEGSLMVNGVELRE---LDAERWRRLLSWVGQNPQLPAAtLRENVLLAWPEASEAQLRlaldkawvsefiallpq 473
                 589******************99999877766655555...222348888888888888887787888999****999999988888888888888888 PP

      AAA_16 107 ......................................avpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslql.laaLlrll 162
                                                       ++                                      +d++s q  ++aL +++
  CTQ27305.1 474 gihtavgdqagrlsvgqaqriavarallvpcrlllldePA------------------------------------ASLDAHSEQRvMQALTHAS 532
                 6666444444444333333333333333333333333333....................................3455555544455554444 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0     0.002       1.7      27      45 ..     379     397 ..     371     420 .. 0.87
   2 !   11.5   0.0   0.00017      0.14     156     206 ..     501     551 ..     482     561 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.002
                 EEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAil 45 
                  ++vG+ GSGKs+ll+ +l
  CTQ27305.1 379 VVLVGQSGSGKSSLLNTLL 397
                 579************9984 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00017
                 CS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 156 vkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekad 206
                   p  l llDe +a LD++  ++v + l ++s++   + ++++ e l++ d
  CTQ27305.1 501 LVPCRLLLLDEPAASLDAHSEQRVMQALTHASSEQTTLLVTHQLEGLADWD 551
                 5577799**********************9999999999999877766655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.7e-07   0.00032      99     121 ..     375     398 ..     333     412 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.7e-07
                  T.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  99 d.ktsvlvGqSGvGKStLinallp 121
                      +vlvGqSG GKS+L+n+ll+
   CTQ27305.1 375 AgARVVLVGQSGSGKSSLLNTLLG 398
                  43789****************986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.4e-06    0.0037       8      89 ..     379     466 ..     376     542 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.4e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv.fvtlpsst..sskdllrellralglelka.........erlsseellealeqalrar 89 
                 +v++G+sG+GK+ ll++ll  l+ e      ++  v  v+l ++    ++ ll+++ ++ +l++ +         +++s+ +l+ al +a+ + 
  CTQ27305.1 379 VVLVGQSGSGKSSLLNTLLGFLPYE------GSLMVnGVELRELDaeRWRRLLSWVGQNPQLPAATlrenvllawPEASEAQLRLALDKAWVSE 466
                 589*******************744......55555778888877779*************999998888888886666666666665555554 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.6e-06    0.0065       2      35 ..     378     411 ..     377     423 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.6e-06
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS-- CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsv 35 
                 ++vlvG++g+GkS+  N++lg   +e +l  ++v
  CTQ27305.1 378 RVVLVGQSGSGKSSLLNTLLGFLPYEGSLMVNGV 411
                 89******************98777777666665 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.5   9.7e-06    0.0083       1      21 [.     379     399 ..     379     409 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.7e-06
                 EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlge 21 
                 +++vG+  sGKSS+ln Llg 
  CTQ27305.1 379 VVLVGQSGSGKSSLLNTLLGF 399
                 799****************95 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   1.3e-05     0.011       1      21 [.     378     398 ..     378     410 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.3e-05
                 EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg 21 
                 +v++vG++ +GKS+L+n+l+g
  CTQ27305.1 378 RVVLVGQSGSGKSSLLNTLLG 398
                 699****************97 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.5e-05     0.022      23      40 ..     376     394 ..     369     403 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.5e-05
      AAA_29  23 g.atlltGpsGsGKSTllD 40 
                 g  ++l+G+sGsGKS+ll 
  CTQ27305.1 376 GaRVVLVGQSGSGKSSLLN 394
                 55689************95 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.4e-05     0.037      19      57 ..     379     416 ..     375     419 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.4e-05
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldpDdlRel 57 
                 ++l+Gq+G+GKs+l++ l   l ++++ + +++ +lRel
  CTQ27305.1 379 VVLVGQSGSGKSSLLNTLLGFL-PYEGSLMVNGVELREL 416
                 799****************999.6999999999999986 PP

>> ICE2  ICE2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.8   4.5e-05     0.038     138     198 ..       8      72 ..       6      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.5e-05
        ICE2 138 qitrwlvnrk.rsdswlill.l..vlsgsvitsalYfLyriyvfpeisvvdasllGvtltlvvfl 198
                 ++trwl++++  s  wl+++ l  v+sg +i++ ++fL ri++   ++++ a+ l + ltl v +
  CTQ27305.1   8 ELTRWLKQQSiISRRWLMISrLlgVASGLLIVAQAWFLARILHRMVMENIPATALLLPLTLLVLI 72 
                 689*****998899998765243468*******************99999998887777776554 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.9e-05     0.085      97     156 ..     344     403 ..     326     417 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.9e-05
       T2SSE  97 kksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156
                 +++  +++ +dl+++    + +a  l+ a+ +   +++ G  gsGK+ ll++ll +++ +
  CTQ27305.1 344 DNDLISVEARDLVIKSPEGKVLAGPLNFALPAGARVVLVGQSGSGKSSLLNTLLGFLPYE 403
                 55666778888888888889999999999999999********************99876 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.8e-05     0.075      32      60 ..     370     397 ..     347     402 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.8e-05
                   EEEGGGS-.SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  32 vldlkkmashllvaGatgsGKStalntLi 60 
                    + l+  a  ++++G +gsGKS  lntL+
    CTQ27305.1 370 NFALPAGA-RVVLVGQSGSGKSSLLNTLL 397
                   55566666.89****************97 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.4   3.4e+02     232     264 ..     360     396 ..     349     398 .. 0.74
   2 ?    9.7   0.0   0.00039      0.34     296     378 ..     458     541 ..     444     559 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.4
                 TTTEEEEE...EEE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 232 pngkkvsG...mgipkG.vtlIvGggfhGKsTLLeAl 264
                 p+gk + G    ++p G  +++vG    GKs LL+ l
  CTQ27305.1 360 PEGKVLAGplnFALPAGaRVVLVGQSGSGKSSLLNTL 396
                 55555555444578888556789***********987 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00039
                 -EEEE--TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHH CS
  ABC_ATPase 296 svkgvDispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvd 378
                 ++ ++ +s Fi  LP+g +t         S    q  ++++al +  +llL+DE  +        + mq+l++ ++e  t lv 
  CTQ27305.1 458 ALDKAWVSEFIALLPQGIHTAvGDQAGRLSVGQAQRIAVARALLVPCRLLLLDEPAASLDAHSEQRVMQALTHASSEQTTLLVT 541
                 5667779************87433344444445555677899*******************999********999998888775 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00031      0.26      30      51 ..     373     394 ..     345     458 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00031
      AAA_25  30 lpagelallaGapgtGKttlal 51 
                 lpag+ ++l+G++g+GK+ l+ 
  CTQ27305.1 373 LPAGARVVLVGQSGSGKSSLLN 394
                 89****************9985 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00018      0.15      27      60 ..     370     403 ..     349     414 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00018
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkkldke 60 
                 +  l ++  v+lvG++G+GK++++++ll  l+ e
  CTQ27305.1 370 NFALPAGARVVLVGQSGSGKSSLLNTLLGFLPYE 403
                 566778899*****************99888744 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00023      0.19       1      20 [.     378     397 ..     378     418 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00023
                 EEEEESSTTSSHHHHHHCHC CS
         Roc   1 KvvlvGdsgvGKtsllkrfv 20 
                 +vvlvG+sg+GK+sll+ ++
  CTQ27305.1 378 RVVLVGQSGSGKSSLLNTLL 397
                 69**************9876 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00019      0.17       2      30 ..     376     401 ..     375     439 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
      AAA_24   2 klkiliyGpsgiGKTtlakelgpkplfid 30 
                 +++++++G+sg+GK++l+++l     f+ 
  CTQ27305.1 376 GARVVLVGQSGSGKSSLLNTL---LGFLP 401
                 689****************99...44444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2    0.0006      0.51       2      25 ..     379     404 ..     379     546 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0006
      AAA_33   2 vllvGlpGsGKstlaerllkklg..a 25 
                 v+lvG +GsGKs l+  ll  l+  +
  CTQ27305.1 379 VVLVGQSGSGKSSLLNTLLGFLPyeG 404
                 789***************98888441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 4248.23
//
Query:       CTQ27306.1  [L=331]
Description: thioredoxin reductase 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-51  173.2   0.1    8.4e-51  172.9   0.1    1.0  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    6.5e-21   74.9   0.0    6.3e-17   61.8   0.0    2.1  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    1.8e-18   66.8   2.2    2.5e-17   63.2   0.4    2.7  3  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      4e-06   25.8   0.1       0.21   10.2   0.1    4.1  5  HI0933_like     HI0933-like protein
    2.2e-05   23.7   3.2      0.043   12.9   0.1    3.8  4  GIDA            Glucose inhibited division protein A
      6e-05   22.3   4.3     0.0058   15.8   0.1    3.1  4  FAD_binding_2   FAD binding domain
    0.00065   19.2   0.0     0.0011   18.4   0.0    1.4  1  FAD_oxidored    FAD dependent oxidoreductase
    0.00067   19.3   0.0        4.2    6.8   0.0    3.6  4  DAO             FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.012   15.0   0.3       0.79    9.0   0.1    2.2  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.012   14.8   0.0      0.071   12.2   0.0    2.1  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
      0.017   14.4   0.1       0.11   11.7   0.1    2.1  2  Thi4            Thi4 family
      0.022   15.0   0.0       0.09   13.0   0.0    2.1  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      0.023   13.1   0.0      0.031   12.7   0.0    1.2  1  FMO-like        Flavin-binding monooxygenase-like
      0.039   14.4   0.0       0.47   10.9   0.0    2.2  2  NAD_binding_7   Putative NAD(P)-binding
       0.04   14.0   0.1        2.2    8.4   0.0    2.6  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
       0.11   11.3   0.3       0.76    8.6   0.1    2.0  2  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.9   0.1   7.5e-54   8.4e-51       2     292 ..      17     310 ..      16     312 .. 0.91

  Alignments for each domain:
  == domain 1  score: 172.9 bits;  conditional E-value: 7.5e-54
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.........HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias.........evvkklnqgielllgeevvkidpgkkkvklekk 90 
                  +++++G+GpAG++aa ++a+a+++ +l+  +g+  +g+   +++++++++d++ ++         e+  k++++i++  + ++ ++d +++ + l+  
   CTQ27306.1  17 KLLILGSGPAGYTAAVYAARANLQPVLI--TGMEKGGQLTTTTEVENWPGDPNDLTgpllmermhEHAAKFETEIIF--D-HISRVDLQNRPFRLTG- 108
                  689*************************..888899*****************999*******99998999988664..4.5799999*******65. PP

                  ECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  91 kegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaa 188
                     d  ++++d+l++AtG+s+r lg+p ++   g++v+++++++++ + +++  ++v+GgG+++vE A +l+++++ev+l+++rd +    +k l ++
   CTQ27306.1 109 ---DSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQK--VAVIGGGNTAVEEALYLSNIASEVHLIHRRDSFR--AEKILIKR 199
                  ...5558*****************************************9998..*********************************8..99****** PP

                  HHHHHHHTTEEEEESCEEEEEEETTE.....EEE.EEETTSCE.EEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTS.....BESSTTEEE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxx.xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxx RF
  Pyr_redox_2 189 leealekeGvevklgtsvkeidgnge.....kle.vvledgee.idadlvvvavGvrpstelleeklglelderggivvdefl.....rtnvpgiyai 274
                  l++++   ++ +++  + +e++g++      +l+ ++++d+ e +++  ++va+G +p+t+++  + +lel e+g+i+v +       +t++pg++a+
   CTQ27306.1 200 LMDKVASGNIVLHTDRTLEEVTGDQMgvsglRLRdTKNSDNVEsLEVAGLFVAIGHSPNTAIF--EGQLEL-ENGYIKVQSGIhgnatQTSIPGVFAA 294
                  *************************9877554445444444447****************996..899**9.*********99999999********* PP

                  GGGCTECCSS--HHHHHH CS
                  xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 275 GDvaggkggpelaqaAvq 292
                  GDv   ++++++a ++  
   CTQ27306.1 295 GDVM--DHIYRQAITSAG 310
                  ****..899999887765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00014      0.15       1      34 [.      19      55 ..      19      70 .. 0.78
   2 !   61.8   0.0   5.6e-20   6.3e-17      88     305 .]      79     295 ..      66     295 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledyli..lEkg.nign 34
                 +I G GPaG +aa+ + +a+l+ +li  +Ekg ++++
   CTQ27306.1 19 LILGSGPAGYTAAVYAARANLQPVLItgMEKGgQLTT 55
                 699*******************999966677764443 PP

  == domain 2  score: 61.8 bits;  conditional E-value: 5.6e-20
  Pyr_redox_3  88 revaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeek.lvkhyskvk..efhkyagqkvvViGgknSavDaAle 182
                   e a++fe +i  f ++ +v+ +++ f+++ ++++y+++ +iiAtG     ++l+ p ee  +    s     +   y++qkv+ViGg+n+av+ Al 
   CTQ27306.1  79 HEHAAKFETEII-FDHISRVDLQNRPFRLTGDSGEYTCDALIIATGA--SARYLGLPSEEAfKGRGVSACAtcDGFFYRNQKVAVIGGGNTAVEEALY 173
                  556667777764.678******************************8..777777777775333333333301333688******************* PP

  Pyr_redox_3 183 lvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvk....tedgkkvev..kddvvlatGykpdlsfl 274
                  l +  +eV++++r+++ ++e          +  +rl + v++++i ++++ +++e++ ++  +       t++ ++ve+      ++a+G +p++ ++
   CTQ27306.1 174 LSNIASEVHLIHRRDSFRAE---------KILIKRLMDKVASGNIVLHTDRTLEEVTGDQMGVSGLrlrdTKNSDNVESleVAGLFVAIGHSPNTAIF 262
                  **************976666.........356667777788899*************8877764222334666667766534567889********** PP

  Pyr_redox_3 275 kkslfeldedgrpvlte....eteetnvpglflaG 305
                  +  ++el e+g++++++    +  +t +pg+f aG
   CTQ27306.1 263 E-GQLEL-ENGYIKVQSgihgNATQTSIPGVFAAG 295
                  9.88888.88888876655558999*******999 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.24   2.7e+02       1      31 [.      17      47 ..      17      62 .. 0.84
   2 !   63.2   0.4   2.2e-20   2.5e-17       1      80 [.     157     234 ..     157     238 .. 0.91
   3 ?   -2.3   0.0       6.1   6.8e+03      11      24 ..     243     256 ..     241     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.24
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvvers 31
                k++++G+G  g  +A ++a+ + +  ++  +
  CTQ27306.1 17 KLLILGSGPAGYTAAVYAARANLQPVLITGM 47
                689**************99998887777655 PP

  == domain 2  score: 63.2 bits;  conditional E-value: 2.2e-20
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT....TEEEECSEEEEEEEEETTSEEEEEEET CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekn....gievllntkveeiegsedgvesvklkd 80 
                 kv+v+GgG++++E+A +l++++++V++++r+d ++      a+kil ++l ++    +i +++++++ee++g++ gv++++l+d
  CTQ27306.1 157 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDSFR------AEKILIKRLMDKvasgNIVLHTDRTLEEVTGDQMGVSGLRLRD 234
                 79*********************************......7777777777777777***********************9985 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 6.1
                 HHHHHHHHHHTTSE CS
   Pyr_redox  11 glElAgalaelgkk 24 
                  lE+Ag + ++g++
  CTQ27306.1 243 SLEVAGLFVAIGHS 256
                 589*****999975 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   0.00019      0.21       2      36 ..      17      51 ..      16      56 .. 0.90
   2 !    6.9   0.0     0.002       2.2     115     165 ..      74     125 ..      72     132 .. 0.73
   3 ?    2.1   0.0     0.057        64       2      41 ..     157     197 ..     156     198 .. 0.88
   4 ?   -0.5   0.0      0.34   3.8e+02     108     152 ..     192     238 ..     186     254 .. 0.72
   5 ?   -0.0   0.0      0.25   2.8e+02     373     386 ..     286     299 ..     280     301 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00019
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +++++G G+AG  aA+ aa+++ + +l+  ++k g
   CTQ27306.1 17 KLLILGSGPAGYTAAVYAARANLQPVLITGMEKGG 51
                 678*********************99999988866 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.002
                  HHHHHHHHT-EEE-S--EEEEECETTE...EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 115 llkelkeagvklrletevksvekeedgk..frvktkseeeleadklvlAtGGl 165
                  l+++++e   k+++e    ++++ + ++  fr++  +++e+++d+l++AtG  
   CTQ27306.1  74 LMERMHEHAAKFETEIIFDHISRVDLQNrpFRLTG-DSGEYTCDALIIATGAS 125
                  67778888888888877666665554441166666.99***********9965 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.057
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS.-HHHHH CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakkl.grKili 41 
                  +v+viGgG   +  A+ +++  ++V l+ + +++ ++Kili
   CTQ27306.1 157 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRDSFrAEKILI 197
                  79**************************9998874577776 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.34
                  CHHH.HHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE..TTEE CS
  HI0933_like 108 aedi.vdallkelkeagvklrletevksvekeedgkfrvkt.kseee 152
                  ae+i ++ l+ ++ + ++ l++++++++v+ ++ g+  +++ +++++
   CTQ27306.1 192 AEKIlIKRLMDKVASGNIVLHTDRTLEEVTGDQMGVSGLRLrDTKNS 238
                  55542789999999999999999999999999999888887444443 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.25
                  TTSTTEEE-GGGBS CS
  HI0933_like 373 kkvpgLffaGEvlD 386
                   ++pg+f aG v+D
   CTQ27306.1 286 TSIPGVFAAGDVMD 299
                  579**********9 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   3.8e-05     0.043       2      29 ..      18      47 ..      17      61 .. 0.82
   2 ?   -0.2   0.0      0.37   4.1e+02     134     150 ..     108     124 ..      86     147 .. 0.74
   3 !    5.7   0.0    0.0057       6.4       1      33 [.     157     188 ..     157     215 .. 0.86
   4 ?    2.5   0.1     0.054        60     352     390 ..     285     325 ..     266     327 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.8e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEE..E CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLi..t 29
                + ++G G AG+ AA+ aar++++ +Li   
  CTQ27306.1 18 LLILGSGPAGYTAAVYAARANLQPVLItgM 47
                5799********************999442 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.37
                 TTS-EEEECEEEE--TT CS
        GIDA 134 edgetikakavviatGt 150
                  d  +++++a +iatG+
  CTQ27306.1 108 GDSGEYTCDALIIATGA 124
                 56678999********9 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0057
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GG CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkld 33 
                 +v ViGgG   +e Al +++   +v Li h+ d
  CTQ27306.1 157 KVAVIGGGNTAVEEALYLSNIASEVHLI-HRRD 188
                 699************************9.4444 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.054
                 BSSSBTEEE-CGGGTB-SHHH...HHHHHHHHHHHHHHHHCT CS
        GIDA 352 tkkvkgLflAGqinGteGYeE...aaaqGllAGinaarkakg 390
                   +++g+f+AG++     Y     +a++G++A++ a r+++g
  CTQ27306.1 285 QTSIPGVFAAGDVMDHI-YRQaitSAGTGCMAALDAERYLDG 325
                 4469999****999986.655111577*********999876 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   5.2e-06    0.0058       2      38 ..      18      53 ..      17      68 .. 0.89
   2 ?   -1.9   0.0       1.2   1.3e+03     139     162 ..      70      93 ..      55     141 .. 0.73
   3 ?   -1.5   0.1      0.88   9.9e+02     141     190 ..     194     243 ..     158     261 .. 0.73
   4 !    6.9   0.1    0.0026       2.9     387     415 ..     283     311 ..     273     313 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.2e-06
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38
                   +++ GsG AG++AA+ aa+a+l+ ++++ +++ gg++
     CTQ27306.1 18 LLILGSGPAGYTAAVYAARANLQPVLITGMEK-GGQL 53
                   589*******************9999999987.6654 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
                    HHHHHHHHHHHHHHTCTEEEEESE CS
  FAD_binding_2 139 tghallarlvesarkagvdfqert 162
                    tg+ l++r++e+a k ++++ + +
     CTQ27306.1  70 TGPLLMERMHEHAAKFETEIIFDH 93 
                    888899999999966665544443 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.88
                    HHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEE CS
  FAD_binding_2 141 hallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevri 190
                    + l++rl++++ + ++ +++   ++e++ ++ +v+G  +++ +++ +v++
     CTQ27306.1 194 KILIKRLMDKVASGNIVLHTDRTLEEVTGDQMGVSGLRLRDTKNSDNVES 243
                    45677778888666688888888888866666888888887777777655 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0026
                    TEEESSBTEEE-STCEESSSSTTS--TTH CS
  FAD_binding_2 387 adgqpipGLYAaGevaaggvhganrlgGn 415
                    a+++ ipG +AaG v+  ++  a   +G+
     CTQ27306.1 283 ATQTSIPGVFAAGDVMDHIYRQAITSAGT 311
                    67889***********9988887777776 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     1e-06    0.0011       2      40 ..      18      55 ..      17      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1e-06
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllts 40
                  +++ G+gpaG++AA+ Aara  + +L+      GG+lt 
    CTQ27306.1 18 LLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTT 55
                  689***********************964.556888875 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0038       4.2       2      31 ..      18      52 ..      17      62 .. 0.80
   2 ?    5.4   0.0      0.01        11     154     207 ..      76     130 ..      64     147 .. 0.59
   3 ?    2.6   0.0     0.075        84       1      32 [.     157     190 ..     157     194 .. 0.82
   4 ?   -2.1   0.0       1.9   2.2e+03     316     335 ..     239     256 ..     196     262 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0038
                EEEECTSHHHHHHHHHHHHTT.....EEEEESSSS CS
         DAO  2 vviiGGGiiGlstAyeLarrg.....Vtllekgdi 31
                ++i G+G +G ++A ++ar++     +t  ekg +
  CTQ27306.1 18 LLILGSGPAGYTAAVYAARANlqpvlITGMEKGGQ 52
                68***************999667777777777754 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.01
                 HHHHHTT-EEEESECEEEEEEEE..TCEEEEEEECT.EEEEEEEEEEE--GGGHH.HH CS
         DAO 154 raaealGveilegtevtgleeed..gkvwgverttp.gendaadavVnaaGawsd.ll 207
                 +++ ++++++ ++    ++++ d  ++  ++  t + ge  ++da+++a+Ga ++ l 
  CTQ27306.1  76 ERMHEHAAKFETEIIFDHISRVDlqNRPFRL--TGDsGEY-TCDALIIATGASARyLG 130
                 3344444444444333334443333456666..5555765.56**********98543 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.075
                 EEEEECTSHHHHHHHHHHHHT.T.EEEEESSSST CS
         DAO   1 dvviiGGGiiGlstAyeLarr.g.Vtllekgdia 32 
                 +v++iGGG + +  A++L+     V l+ ++d +
  CTQ27306.1 157 KVAVIGGGNTAVEEALYLSNIaSeVHLIHRRDSF 190
                 59****************7532479999999765 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.9
                 SEEEEEEETEEEEEEEEECT CS
         DAO 316 lpligetpgvkglylatGhs 335
                 + +     +v gl++a Ghs
  CTQ27306.1 239 DNVESL--EVAGLFVAIGHS 256
                 222222..467888888886 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1    0.0007      0.79      19      50 ..       9      37 ..       3      54 .. 0.86
   2 ?    3.9   0.0     0.025        28      12      61 ..     136     188 ..     129     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0007
                 TTCEETCB---EEEEESTSHHHHHHHHHHHHT CS
  AlaDh_PNT_C 19 laGgvpgvepakvlviGgGvaGlqAiatakgl 50
                 l+G+ +   ++k l++G G aG  A+  a++ 
   CTQ27306.1  9 LMGTAK---HSKLLILGSGPAGYTAAVYAARA 37
                 677877...*****************999876 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.025
                  GCTSEEE.TTCEETC..B---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C  12 ffggkgt.laGgvpg..vepakvlviGgGvaGlqAiatakglgakVtvlDvrp 61 
                  +f+g+g+ + +++ g   ++ kv viGgG   ++ +   +++  +V ++  r 
   CTQ27306.1 136 AFKGRGVsACATCDGffYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 188
                  556665514456666555889********999988888888888888777665 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.4e-05     0.071     141     229 ..     107     191 ..      78     196 .. 0.64
   2 ?   -0.3   0.0      0.41   4.6e+02     294     340 ..     208     255 ..     193     257 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.4e-05
  K_oxygenase 141 egeeeelearnlvlgvGtep.kiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrseale 229
                  +g++ e+++ +l++++G ++ ++    e+  +  r v +  +        +++++aV+G+G +a e +  l + +  +e++l+ r+++++
   CTQ27306.1 107 TGDSGEYTCDALIIATGASArYLGLPSEEAFK-GRGVSACATCDG--FFYRNQKVAVIGGGNTAVEEALYLSNIA--SEVHLIHRRDSFR 191
                  56778888888888888554144333332221.222222222222..2456799**********99777766655..599*****99997 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.41
  K_oxygenase 294 rlrllpnrevesaeaegkgeveltlrneesgee.etlevdavvlATGY 340
                  ++ l ++r++e+++ ++ g   l lr++++ ++ e+lev  +++A G 
   CTQ27306.1 208 NIVLHTDRTLEEVTGDQMGVSGLRLRDTKNSDNvESLEVAGLFVAIGH 255
                  577888899999998888788888888776544488888888888875 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1    0.0001      0.11       8      47 ..       5      44 ..       1      56 [. 0.77
   2 ?    0.1   0.0      0.36     4e+02      15      49 ..     153     186 ..     145     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
                HHHHHHHHT.EEEEEEE--SHHHHHHHHHHHHCTTS-EEEE CS
        Thi4  8 yfedllkya.esDvvivGaGssGLtaayylakkpdlkvail 47
                y+ dl+  a  s ++i G+G++G taa y a++ +l+ +++
  CTQ27306.1  5 YYGDLMGTAkHSKLLILGSGPAGYTAAVYAARA-NLQPVLI 44
                555555444158899****************99.9987776 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.36
                 HTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4  15 yaesDvvivGaGssGLtaayylakkpdlkvailer 49 
                 y ++ v+++G+G + +  a yl++    +v ++ r
  CTQ27306.1 153 YRNQKVAVIGGGNTAVEEALYLSNI-ASEVHLIHR 186
                 6678899*******99999999987.556666655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.1e-05      0.09       1      40 [.      20      58 ..      20      87 .. 0.77
   2 ?   -1.9   0.0       3.6   4.1e+03       1      29 [.     160     188 ..     160     190 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.1e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev 40
                   I+G+G +G +aA ++a+a+++ +l+ ++   GG++++ + 
     CTQ27306.1 20 ILGSGPAGYTAAVYAARANLQPVLI-TGMEKGGQLTTTTE 58
                   89****************9997777.66677777777644 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.6
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    ++G+G ++   A +L++   +v+l+ +rd
     CTQ27306.1 160 VIGGGNTAVEEALYLSNIASEVHLIHRRD 188
                    89999888888888887667777776665 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.7e-05     0.031     159     235 ..     131     212 ..     109     284 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.7e-05
    FMO-like 159 fpGiekfkGqyfhsrdykepevfkgkrvlviGlGnsggdiavelsrtaeqvllstrsGsw.....vlsrvsdsGypwdmllv 235
                 +p  e+fkG+ + +    +   +++++v viG Gn++ + a  ls+ a +v l  r+ s+     +++r++d+    +++l+
  CTQ27306.1 131 LPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDSFraekiLIKRLMDKVASGNIVLH 212
                 57779999999999999999999****************************9988887763333256666666666666665 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.41   4.6e+02       6      39 ..      14      47 ..       9     123 .. 0.78
   2 ?   10.9   0.0   0.00042      0.47       6      43 ..     154     190 ..     152     263 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.41
  NAD_binding_7  6 kgkkvlvvGgGevAarkvrklleagakvtvvape 39
                   k  k l+ G G+ +++ +   ++a+ + ++++  
     CTQ27306.1 14 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 47
                   677899******9999888888888777776655 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00042
  NAD_binding_7   6 kgkkvlvvGgGevAarkvrklleagakvtvvapevkee 43 
                    +++kv v+GgG+ A + +  l +   +v+++  +  ++
     CTQ27306.1 154 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD-SF 190
                    689***************************99884.22 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.12   1.3e+02       8      43 ..      11      46 ..       7      62 .. 0.84
   2 ?    8.4   0.0    0.0019       2.2      11      53 ..     154     196 ..     148     214 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.12
                  S..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEE CS
  Shikimate_DH  8 eslkekkvlliGaGemaelvakhLlakgvkkvvvaN 43
                  ++ k++k l++G G  +  +a + ++++++ v++++
    CTQ27306.1 11 GTAKHSKLLILGSGPAGYTAAVYAARANLQPVLITG 46
                  567899***************999999999999975 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0019
                   TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHH CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakela 53 
                   +++kv +iG G++a + a +L++   +  ++  R+  ra+++ 
    CTQ27306.1 154 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDSFRAEKIL 196
                   689*******************999998899999999998864 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00068      0.76       1      32 [.      17      48 ..      17      54 .. 0.84
   2 ?    0.7   0.0      0.17   1.9e+02       1      32 [.     157     185 ..     157     236 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00068
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlve 32
                    k++i+G G+aG++aA + a+a  + + +t +e
      CTQ27306.1 17 KLLILGSGPAGYTAAVYAARANLQPVLITGME 48
                    579****************9986667776555 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.17
                     EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalakalkgklevtlve 32 
                     k+ ++GGG  +   A +l++      ev l+ 
      CTQ27306.1 157 KVAVIGGGNTAVEEALYLSNIA---SEVHLIH 185
                     6899999999999999999988...5577665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2323.14
//
Query:       CTQ27307.1  [L=59]
Description: hypothetical protein CH1034_170061 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 488.56
//
Query:       CTQ27308.1  [L=164]
Description: DNA-binding transcriptional dual regulator, leucine-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-25   87.9   0.1    9.3e-25   86.4   0.0    1.7  2  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    1.2e-21   76.0   0.5      3e-21   74.7   0.4    1.7  2  HTH_24          Winged helix-turn-helix DNA-binding
    5.3e-20   71.0   0.4    8.4e-20   70.3   0.4    1.3  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
     0.0032   17.3   0.0     0.0063   16.4   0.0    1.4  1  MarR            MarR family
  ------ inclusion threshold ------
      0.018   14.9   0.0      0.031   14.1   0.0    1.4  1  MarR_2          MarR family
      0.067   13.0   0.0       0.12   12.2   0.0    1.4  1  LexA_DNA_bind   LexA DNA binding domain
       0.07   13.1   0.0       0.24   11.4   0.0    1.9  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.082   12.5   0.0       0.11   12.1   0.0    1.3  1  E3_UFM1_ligase  E3 UFM1-protein ligase 1
       0.11   12.7   0.0       0.21   11.8   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.1   2.1e+03      45      68 ..      10      33 ..       9      35 .. 0.79
   2 !   86.4   0.0   4.7e-28   9.3e-25       1      75 []      78     152 ..      78     152 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
                    SSHHHHHHHHHHTTTTSTTEEEEE CS
  AsnC_trans_reg 45 rdlealerflreklaslpgvarte 68
                    +dl+ ++r + ++l++   + ++e
      CTQ27308.1 10 KDLDRIDRNILNELQKDGRISNVE 33
                    688889999998899888888877 PP

  == domain 2  score: 86.4 bits;  conditional E-value: 4.7e-28
                     EEEEE-GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEEE CS
  AsnC_trans_reg   1 vlvslepghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivlet 75 
                     v+++l++g+p+ +e+f +a+++l+e++ec+ v+Gd+dyllk +v+d+ a++++l e+l +lpgv +t+t++v+e+
      CTQ27308.1  78 VEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEE 152
                     89****999****************************************************************96 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.4   1.5e-24     3e-21       1      48 []      12      59 ..      12      59 .. 0.98
   2 ?   -2.1   0.0       1.5   2.9e+03      35      43 ..      94     102 ..      93     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 1.5e-24
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                ld++dr+IL++Lqk++ris+ eL++r+glSp+++++r++rLe++G+I+
  CTQ27308.1 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQ 59
                79********************************************95 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.5
      HTH_24  35 nrrlkrLee 43 
                 n+ +++Lee
  CTQ27308.1  94 NAAVQKLEE 102
                 7899***98 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.4   4.2e-23   8.4e-20       1      42 []      12      53 ..      12      53 .. 0.99

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 4.2e-23
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   LD+iDr IL++Lq+d+Ris+ eL++rvGlS++++l+RvrrLe
     CTQ27308.1 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLE 53
                   8****************************************8 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.2e-06    0.0063       8      48 ..      19      59 ..      18      62 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.2e-06
                HHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  8 iLrilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                iL  l   g +s+ eL k++g+s++   + ++rLe++G+i+
  CTQ27308.1 19 ILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQ 59
                78889999********************************6 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.6e-05     0.031       2      52 ..      11      59 ..      10      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
                T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2  2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                +l++ ++ +L++L   ++  ++  el +r gls+     +++rL+++G+++
  CTQ27308.1 11 DLDRIDRNILNELQKDGR--ISNVELSKRVGLSPTPCLERVRRLERQGFIQ 59
                57788899*****99998..*****************************96 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.9e-05      0.12      29      57 ..      32      59 ..      17      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.9e-05
                   HHHHHHHTS-.HHHHHHHHHHHHHTTSEE CS
  LexA_DNA_bind 29 reiaralglkSpsaveehLkaLerKGyie 57
                    e+++++gl+ p +  e+ ++Ler G+i+
     CTQ27308.1 32 VELSKRVGLS-PTPCLERVRRLERQGFIQ 59
                   6999*****7.****************96 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.24      21      66 ..      28      71 ..      13      73 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEETEEEEES-HHHHH CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisrgrririldleaLr 66
                ++++ el+ ++Gl++  +    ++L+r+g i+ g+   +l++ +L 
  CTQ27308.1 28 RISNVELSKRVGLSPTPCLERVRRLERQGFIQ-GY-TALLNPHYLD 71
                78999**************************9.44.6788888886 PP

>> E3_UFM1_ligase  E3 UFM1-protein ligase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.6e-05      0.11      54     116 ..      13      72 ..      12     111 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.6e-05
  E3_UFM1_ligase  54 eqLekeikdelekagGRvnlvdLakilnvdlshiekkaeeivkedkelqlvqgelitksYlds 116
                     ++++++i +el+k  GR++ v+L+k +++  + + ++++++  e +++      l++ +Yld 
      CTQ27308.1  13 DRIDRNILNELQKD-GRISNVELSKRVGLSPTPCLERVRRL--ERQGFIQGYTALLNPHYLDA 72 
                     578999******99.9******************9999999..44444445557888888875 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0001      0.21      19      52 ..      25      58 ..      17      62 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
                    HHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
  Fe_dep_repress 19 ekkvvktkdlaerLnvspssVsemlkkLekdGyv 52
                    + + +++ +l++r + sp    e +++Le++G++
      CTQ27308.1 25 KDGRISNVELSKRVGLSPTPCLERVRRLERQGFI 58
                    6678999*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1347.96
//
Query:       CTQ27309.1  [L=1410]
Description: DNA-binding membrane protein required for chromosome resolution and partitioning [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-74  250.7   0.0    1.8e-74  250.1   0.0    1.3  1  FtsK_SpoIIIE   FtsK/SpoIIIE family
    1.1e-41  142.4  14.2    1.6e-41  141.9  14.2    1.2  1  FtsK_4TM       4TM region of DNA translocase FtsK/SpoIIIE
    5.2e-29  100.4   0.0    9.6e-29   99.5   0.0    1.5  1  FtsK_alpha     FtsK alpha domain
    2.3e-28   97.7   0.1    4.5e-28   96.8   0.1    1.5  1  FtsK_gamma     Ftsk gamma domain
    6.3e-05   22.1   0.0     0.0059   15.6   0.0    2.1  2  AAA_10         AAA-like domain
    0.00066   19.8   0.1     0.0014   18.7   0.1    1.5  1  DUF87          Helicase HerA, central domain
  ------ inclusion threshold ------
      0.018   14.5   0.0         11    5.4   0.0    3.0  3  TniB           Bacterial TniB protein
      0.018   14.1   0.0      0.037   13.1   0.0    1.4  1  T2SSE          Type II/IV secretion system protein
      0.034   13.0   0.1       0.23   10.3   0.0    1.9  2  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
       0.13   12.5   0.0       0.67   10.2   0.0    2.1  1  AAA_22         AAA domain
        0.2   10.4   0.0       0.31    9.8   0.0    1.1  1  Adeno_IVa2     Adenovirus IVa2 protein


Domain annotation for each model (and alignments):
>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.1   0.0   1.1e-77   1.8e-74       2     243 .]    1029    1242 ..    1028    1242 .. 0.99

  Alignments for each domain:
  == domain 1  score: 250.1 bits;  conditional E-value: 1.1e-77
                    HHHHHTSHHHHT---TTEEEEEEETTS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSSCGGGTT-TTBSS. CS
  FtsK_SpoIIIE    2 LlevleskkfrtessqlpvalgkeisgnplvldlkkmashllvaGatgsGKStalntLilSlatthtPeeVqliliDykgvelsalediphllsv 96  
                    L+evl+++kfr+++s+l+v lgk+i g+p+v+dl+km+ hllvaG+tgsGKS+++n++ilS++++++Pe+V++i+iD+k++els++e+iphll+ 
    CTQ27309.1 1029 LREVLDNAKFRDNPSPLTVVLGKDIAGDPVVADLAKMP-HLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLT- 1121
                    89************************************.*******************************************************. PP

                    S-B-SHHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHTT---B-TT-......................-----------B---- CS
  FtsK_SpoIIIE   97 avatdperalraleeLvkemeeryalfreagvrsiaaydgeiaedpldifgdvflvlDnyddlaaeneritsLsnqgpsygvhvlvtagrelekr 191 
                    +v+td+++a++al++ v+eme+ry+l+++ gvr++a+y+++iae++ +++++ ++++                      +  + + + ++ lek+
    CTQ27309.1 1122 EVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYNEKIAEAARMGRPIPDPYW----------------------KPGDSMDAVHPVLEKL 1194
                    ********************************************************9......................89999*********** PP

                    -EEEEEEC-HHHHHHHHHHH....HHHHHHHHHHHCGGGTEEEEEEES---T CS
  FtsK_SpoIIIE  192 pslvvivderieLrlaapkdssvlvedaivRlarkgraaglHlllatqrlsv 243 
                    p++vv+vde+++L+++ +k+    ve++i+Rla+k+raag+Hl+latqr+sv
    CTQ27309.1 1195 PYIVVLVDEFADLMMTVGKK----VEELIARLAQKARAAGIHLVLATQRPSV 1242
                    ********************....**************************96 PP

>> FtsK_4TM  4TM region of DNA translocase FtsK/SpoIIIE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.9  14.2   9.7e-45   1.6e-41       2     171 .]      20     191 ..      19     191 .. 0.95

  Alignments for each domain:
  == domain 1  score: 141.9 bits;  conditional E-value: 9.7e-45
    FtsK_4TM   2 rllkEllgllllllalflllaLlsYspdDpswstsgsaaaavhNwgGrvGAwladlllslfGlsawllvvlllawglrllrrkslerr......llrll 94 
                 r+l E++++l+ l+a++l++aLls++p+Dpsws+++ +++++hN+gG  GAwlad+l+++fG+ a+ ++v+++  ++  +r+++ ++       +lrl+
  CTQ27309.1  20 RRLLEAMLILCSLFAIWLMAALLSFNPSDPSWSQTA-WHEPIHNLGGAPGAWLADTLFFIFGVMAYTIPVIIIGGCWFAWRHQENDEYidyfavSLRLI 117
                 7889****************************9995.899*******************************************99955556666***** PP

    FtsK_4TM  95 galllllasaalfalrlasledelpggaGGvlGrllaaalstllgftGatllllvllliglslvlgfswlelaerlg 171
                 gal l+l+s++l+a++ +   d + +++GGv+G ll++ l+ ll ++G t++ll+++++gl+l++g+sw+++ae+lg
  CTQ27309.1 118 GALALILTSCGLAAINAD---DIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCIWAAGLTLFTGWSWVSIAEKLG 191
                 ***************999...6999*************************************************986 PP

>> FtsK_alpha  FtsK alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.0   5.9e-32   9.6e-29       1     101 []     921    1021 ..     921    1021 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 5.9e-32
  FtsK_alpha    1 LPsldlLeeeekekkkedeeelekkaklieetleefgieakvveisvGPvvtqyevepapgvkvskiaaleddlalaLaaksirieapipGksvvGi 97  
                  LPsldlL+++++e + +d+ +le+ a+l+e+ l++f i+a+vv++s+GPv+t++e+++apgvk+++i +l++dla++L++  +r++++ipGk +vG+
  CTQ27309.1  921 LPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGL 1017
                  8************9*********************************************************************************** PP

  FtsK_alpha   98 evPn 101 
                  e+Pn
  CTQ27309.1 1018 ELPN 1021
                  ***9 PP

>> FtsK_gamma  Ftsk gamma domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.1   2.8e-31   4.5e-28       2      62 ..    1345    1405 ..    1344    1406 .. 0.97

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 2.8e-31
  FtsK_gamma    2 eeDelfeeavelvveegkaStSllQRrlriGYnRAarlidqLeeeGiVgpaegskpReVli 62  
                  e D+lf++av++v+e++kaS+S +QR++riGYnRAar+i+q+e++GiV+++ ++++ReVl+
  CTQ27309.1 1345 ELDPLFDQAVNFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLA 1405
                  78*********************************************************96 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.6e-06    0.0059      21      71 ..    1065    1119 ..    1052    1141 .. 0.83
   2 ?    4.2   0.0     0.011        17     257     313 ..    1214    1271 ..    1196    1278 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.6e-06
      AAA_10   21 asasliiGdlGnGKSvlakllvlyisllg....gkaliiDpkkerekfketlpei 71  
                   ++ l+ G +G GKSv ++ ++l ++        + ++iDpk  +   +e +p++
  CTQ27309.1 1065 MPHLLVAGTTGSGKSVGVNAMILSMLYKAqpedVRFIMIDPKMLELSVYEGIPHL 1119
                  6899****************99888776566669********9877788777764 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.011
      AAA_10  257 eGkkllkelvRiGRsynaavylvtqsad.DvlkeelknniglklaFretdkeeikkvL 313 
                  + ++l+  l  + R+    ++l+tq ++ Dv    +k ni++++aF    k + + +L
  CTQ27309.1 1214 KVEELIARLAQKARAAGIHLVLATQRPSvDVITGLIKANIPTRIAFTVSSKIDSRTIL 1271
                  33456666667778888899*****9765*****************988777776666 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   8.8e-07    0.0014      13      60 ..    1057    1105 ..    1047    1106 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 8.8e-07
       DUF87   13 pvyldlnklvtrHlAilgsTGsGKSntvavLleelle...kkgatililDp 60  
                  pv  dl k+   Hl++ g+TGsGKS  v  ++ ++l      +++ +++Dp
  CTQ27309.1 1057 PVVADLAKM--PHLLVAGTTGSGKSVGVNAMILSMLYkaqPEDVRFIMIDP 1105
                  788899999..9****************87777666548666789999998 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0068        11      33     121 ..    1063    1154 ..    1058    1157 .. 0.57
   2 ?    5.2   0.0    0.0076        12     104     169 ..    1180    1245 ..    1168    1247 .. 0.86
   3 ?   -1.2   0.0      0.69   1.1e+03       5      25 ..    1368    1388 ..    1365    1394 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0068
        TniB   33 krmpnlllvGdsnnGKtmivekFarlhppekdedae...kvpvlvvqappkpdekrlyaaiLealgaplka.rarvskleqqvlrllrelkvr 121 
                   +mp+ll++G +  GK++ v+    +   + ++++     ++  ++++       +l +++++ ++  ++a r++v+++e++ ++l+++l+vr
  CTQ27309.1 1063 AKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVrfiMIDPKMLELSVYEGIPHLLTEVVTDMKDAANAlRWSVNEMERR-YKLMSALGVR 1154
                  68***************98887664433333222220113344455555566666666666666655544313444444444.4666666655 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0076
        TniB  104 vskleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGteealral 169 
                    +  ++v+ +l++l   v+++DE+ +l+    +k +e+++ l +  +   i +vl+  +  ++++
  CTQ27309.1 1180 PGDSMDAVHPVLEKLPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVI 1245
                  5667788999*******************************9999999999999988777666665 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.69
        TniB    5 iradrwigyprakeilerLee 25  
                  ++++  igy+ra++i+e++e+
  CTQ27309.1 1368 VQRQFRIGYNRAARIIEQMEA 1388
                  677788************985 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.3e-05     0.037     131     163 ..    1067    1103 ..    1048    1135 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.3e-05
       T2SSE  131 lilvsGgTgsGKttllyallk.einks...derivtv 163 
                   +lv+G+TgsGK++ ++a++  ++ k    d r++++
  CTQ27309.1 1067 HLLVAGTTGSGKSVGVNAMILsMLYKAqpeDVRFIMI 1103
                  79**************997540443333435666655 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00014      0.23      16      52 ..    1066    1106 ..    1052    1115 .. 0.73
   2 ?   -0.0   0.0       0.2   3.2e+02     248     281 ..    1200    1239 ..    1192    1242 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
  TrwB_AAD_bind   16 qhilivGttGsGKtqalekl....lrairargdraivlDlt 52  
                      h+l++GttGsGK++ ++++    l +++    r i +D++
     CTQ27309.1 1066 PHLLVAGTTGSGKSVGVNAMilsmLYKAQPEDVRFIMIDPK 1106
                     59************866665000055555556788988876 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.2
  TrwB_AAD_bind  248 flDElpaL.....grleel.ksllaegRkfGgavvlglqs 281 
                     ++DE+++L     +++eel ++l++++R  G+ +vl+ q 
     CTQ27309.1 1200 LVDEFADLmmtvgKKVEELiARLAQKARAAGIHLVLATQR 1239
                     678888885555558998725677899**********997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00041      0.67       7     130 ..    1067    1238 ..    1063    1244 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00041
      AAA_22    7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevv.....fvtlpsstsskdllrellralglelka............................ 70  
                  +l+v G +G+GK++ ++ +  +    +ka+ e+++++       +l++ ++   ll+e++ ++++ ++a                            
  CTQ27309.1 1067 HLLVAGTTGSGKSVGVNAMILSML--YKAQPEDVRFImidpkMLELSVYEGIPHLLTEVVTDMKDAANAlrwsvnemerryklmsalgvrnlagyne 1161
                  799**************9999974..55566788888344444444444466666666666666666669999999999999999998888889999 PP

      AAA_22   71 ..............erlsseellealeqalraravielliiDEaqhlr.s.eealeeL.rsllnl.srkgvqliLvGt 130 
                                +  +  + ++a++  l++     ++++DE+  l+ +  + +eeL  +l+   +  g++l+L+ +
  CTQ27309.1 1162 kiaeaarmgrpipdPYWKPGDSMDAVHPVLEKLPY-IVVLVDEFADLMmTvGKKVEELiARLAQKaRAAGIHLVLATQ 1238
                  99999999988888777777778888888888888.999999999987735555555514444446788888888765 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00019      0.31      91     130 ..    1069    1108 ..    1060    1115 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00019
  Adeno_IVa2   91 viyGPtGsGksqllrnlissklisPiPetvifitPekdmi 130 
                  ++ G tGsGks  + ++i s l +  Pe v fi  + +m+
  CTQ27309.1 1069 LVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKML 1108
                  578*****************************98888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.21u 0.31s 00:00:01.52 Elapsed: 00:00:00.46
# Mc/sec: 9201.07
//
Query:       CTQ27310.1  [L=203]
Description: chaperone for lipoproteins [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-58  195.4   4.7    5.9e-58  195.2   4.7    1.0  1  LolA        Outer membrane lipoprotein carrier protein LolA
    1.4e-05   24.5   0.1      0.017   14.5   0.0    2.2  2  DUF2092     Predicted periplasmic protein (DUF2092)
  ------ inclusion threshold ------
       0.01   16.3   0.4       0.17   12.3   0.0    2.6  2  DUF1964     Domain of unknown function (DUF1964)
      0.073   13.4   0.2       0.17   12.3   0.0    1.6  2  DUF5024     Domain of unknown function (DUF5024)
       0.11   12.9   1.1       0.23   11.8   1.1    1.5  1  Dr_adhesin  Dr family adhesin


Domain annotation for each model (and alignments):
>> LolA  Outer membrane lipoprotein carrier protein LolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.2   4.7   1.6e-61   5.9e-58       2     165 .]      33     191 ..      32     191 .. 0.99

  Alignments for each domain:
  == domain 1  score: 195.2 bits;  conditional E-value: 1.6e-61
                 T-SEEEEEEEEEEE-TTS--EEEEEEEEEEETTTEEEEEE-TTS-EEEEEETTEEEEEETTTTEEEEEEHHHHTTT-GGGGGGS-HHHHTTTEEEEEEE CS
        LolA   2 kvktlsadFvQtvtsgegkkiqetsGklaikrPgkfrweytsPdeqlivsdgktvwlydpdleqvtieslkqalsktplvlLledkaklskdynvsvkk 100
                 kv++++a+F+Q+vt+g+g+ +q ++G+l++krP++f+w++t+Pde+++vsdgkt+w+y+p++eq+t+++lk+a+s+tp++l+++++++++++yn++   
  CTQ27310.1  33 KVSSFHASFTQKVTDGSGNAVQDGQGDLWVKRPNLFNWHMTQPDESVLVSDGKTLWFYNPFVEQATATWLKDATSNTPFMLIARNQSSDWQQYNIK--- 128
                 799*********************************************************************************************... PP

                 ETTEEEEEEEESSS-SSECEEEEEE.ETTEEEEEEEEETT--EEEEEEEEEEES----GGGG--- CS
        LolA 101 eqdldtltlkpkakdanlsritigfdkkgllkqlkvvdaqGqrttitfsnvkenakladdlFkft 165
                  q++d+++l+pk+ + nl+++ti++ ++g+++q++ v++++qr+++++++++ n ++++++F+ft
  CTQ27310.1 129 -QNGDDFVLTPKSGSGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQ-NGAVDAAKFTFT 191
                 .***************************************************.**********97 PP

>> DUF2092  Predicted periplasmic protein (DUF2092)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.7e-06     0.017      18      77 ..      35      92 ..      22      99 .. 0.86
   2 !    8.3   0.1   0.00038       1.4     153     207 ..     147     197 ..     115     199 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.7e-06
     DUF2092 18 fsvtadttydsvlasgqklqfsasrevkvqrPdklrvdtsgdekdrefyyDGktftlydk 77
                 s++a+ t++++  sg+++q   +++++v+rP+ +  +++ ++ ++ +++DGkt+  y++
  CTQ27310.1 35 SSFHASFTQKVTDGSGNAVQD-GQGDLWVKRPNLFNWHMTQPD-ESVLVSDGKTLWFYNP 92
                4899***********999985.679**************8775.56799*****999876 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00038
     DUF2092 153 qlWIsqgdkpLprkivityktdpgapqytaefsdWnldpeipedtFrftpPkgAr 207
                 q++I+ g +  ++++++++++d+   +++ +++ ++ +  ++++ F+ftpPkg +
  CTQ27310.1 147 QFTINVGRDGTIHQFSAVEQDDQ---RSSYQLKSQQ-NGAVDAAKFTFTPPKGVT 197
                 67777777777888888887776...5666666444.5569***********965 PP

>> DUF1964  Domain of unknown function (DUF1964)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.15   5.5e+02      45      59 ..      15      29 ..      12      32 .. 0.83
   2 ?   12.3   0.0   4.7e-05      0.17       6      42 ..     161     201 ..     155     203 .] 0.73

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.15
                -EEEEEEETTEEEEE CS
     DUF1964 45 vasLrWsDsaGdhrt 59
                v s +W D+a d ++
  CTQ27310.1 15 VVSQVWADAASDLKS 29
                78889*****99775 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.7e-05
                 EEEEEETTTEEEEEEE-S....S-EEEEEE-GGGC-STT-- CS
     DUF1964   6 fsysvdgDtsitfaWkge....tssatLtfePkrGlGvdna 42 
                 fs  +++D+  +++ k++       a  tf+P +G+ vd++
  CTQ27310.1 161 FSAVEQDDQRSSYQLKSQqngaVDAAKFTFTPPKGVTVDDQ 201
                 777777777777766555222267789************97 PP

>> DUF5024  Domain of unknown function (DUF5024)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.2   7.8e+03      75      95 ..     111     132 ..      95     137 .. 0.50
   2 ?   12.3   0.0   4.6e-05      0.17      64      99 ..     149     184 ..     143     189 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.2
     DUF5024  75 fllife.kdkekrvYtlkvdee 95 
                 f+li + + ++ + Y++k + +
  CTQ27310.1 111 FMLIARnQSSDWQQYNIKQNGD 132
                 4444330334456677776655 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.6e-05
     DUF5024  64 aikvvnnGkanfllifekdkekrvYtlkvdeegevk 99 
                 +i+v ++G ++++  +e+d+++++Y+lk +++g+v 
  CTQ27310.1 149 TINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVD 184
                 79999**************************99985 PP

>> Dr_adhesin  Dr family adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.1   6.3e-05      0.23       1      17 [.       1      17 [.       1      18 [. 0.98

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.3e-05
  Dr_adhesin  1 MKKLAIMaatSvltavs 17
                MKKLAI  a + +++vs
  CTQ27310.1  1 MKKLAITCALLSGMVVS 17
                ****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1525.77
//
Query:       CTQ27311.1  [L=447]
Description: recombination protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-66  223.8   1.0    2.3e-66  222.8   1.0    1.5  1  MgsA_C           MgsA AAA+ ATPase C terminal
    1.1e-23   83.4   0.9    2.3e-23   82.3   0.2    2.0  1  AAA_assoc_2      AAA C-terminal domain
    5.7e-18   65.6   0.1    3.8e-17   62.9   0.0    2.1  2  AAA              ATPase family associated with various cellul
    2.4e-14   53.4   0.0    4.5e-14   52.5   0.0    1.4  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.3e-07   32.2   0.5    0.00039   20.9   0.1    3.4  2  AAA_16           AAA ATPase domain
    5.2e-07   29.8   0.1    9.9e-06   25.6   0.1    2.4  1  AAA_5            AAA domain (dynein-related subfamily)
    5.6e-07   29.1   0.2     0.0013   18.2   0.1    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    7.9e-06   25.7   0.0       0.01   15.5   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
    1.7e-05   25.1   1.5      0.066   13.5   0.0    3.1  3  AAA_22           AAA domain
    0.00011   22.0   0.5     0.0034   17.1   0.5    2.5  1  AAA_30           AAA domain
    0.00012   21.9   0.0    0.00079   19.3   0.0    2.3  2  AAA_3            ATPase family associated with various cellul
    0.00014   22.2   0.0       0.03   14.6   0.1    2.5  2  AAA_19           AAA domain
    0.00041   20.1   0.0    0.00093   19.0   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
    0.00054   20.1   0.0     0.0018   18.4   0.0    1.8  2  AAA_2            AAA domain (Cdc48 subfamily)
     0.0009   19.3   0.0     0.0021   18.1   0.0    1.6  1  AAA_14           AAA domain
     0.0011   19.0   0.2       0.66   10.0   0.1    2.5  2  ResIII           Type III restriction enzyme, res subunit
     0.0012   19.0   0.0     0.0021   18.2   0.0    1.4  1  Sigma54_activ_2  Sigma-54 interaction domain
     0.0033   17.2   0.0      0.073   12.9   0.0    2.1  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
     0.0035   17.7   0.0       0.12   12.8   0.0    2.4  2  RNA_helicase     RNA helicase
     0.0036   17.8   0.0     0.0065   17.0   0.0    1.5  1  ABC_tran         ABC transporter
     0.0037   17.0   0.0      0.007   16.1   0.0    1.4  1  AAA_24           AAA domain
     0.0076   16.4   0.1       0.03   14.5   0.1    1.8  1  AAA_33           AAA domain
     0.0081   16.4   0.0      0.032   14.5   0.0    2.1  1  AAA_28           AAA domain
     0.0083   15.3   0.0      0.013   14.7   0.0    1.2  1  DUF815           Protein of unknown function (DUF815)
  ------ inclusion threshold ------
      0.012   16.1   0.0      0.029   14.9   0.0    1.7  1  AAA_18           AAA domain
      0.013   15.2   0.0      0.069   12.8   0.0    2.2  2  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
      0.021   14.6   0.0      0.043   13.6   0.0    1.5  1  AAA_11           AAA domain
      0.043   13.4   0.0       0.11   12.1   0.0    1.8  1  AAA_25           AAA domain
       0.08   12.3   0.0        2.2    7.7   0.0    2.8  3  TniB             Bacterial TniB protein
        0.1   12.5   0.0       0.33   10.8   0.0    1.9  2  NACHT            NACHT domain
       0.14   12.0   0.0       0.26   11.2   0.0    1.5  1  NTPase_1         NTPase
       0.16   11.1   0.6        1.4    8.1   0.5    2.4  2  DUF2075          Uncharacterized conserved protein (DUF2075)
        0.2   10.7   0.0       0.94    8.5   0.0    2.0  2  Parvo_NS1        Parvovirus non-structural protein NS1


Domain annotation for each model (and alignments):
>> MgsA_C  MgsA AAA+ ATPase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.8   1.0   4.3e-69   2.3e-66       1     166 [.     268     434 ..     268     435 .. 0.98

  Alignments for each domain:
  == domain 1  score: 222.8 bits;  conditional E-value: 4.3e-69
                 TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHHHHCS----GG.GHHHHHHHHH------ CS
      MgsA_C   1 GSdpdAAlyylarmleaGedprfiaRRlviiAseDiGlAdpqalqlavaaaeaveriGlpEariaLaqavvylalapKSnaaykAikkaledvkekksl 99 
                 GS pdAAly++ar+++aG dp ++aRR ++iAseD+G+Adp+a+q+a++a+++++r+G  E++ a+aqa+vyla+apKSna+y+A+k+al+d+++++++
  CTQ27311.1 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARDRPDY 366
                 8************************************************************************************************** PP

                 ---GGGST...........T-T---GGG--SS--.----S-CCG--..--------HHHHHHH-XXX. CS
      MgsA_C 100 evPlhLrnaptklakklgygkgYkyphdypegvv.kqqylpdelkkkkfYepterglekkikerlekl 166
                 +vP hLrnaptkl+k++gyg++Y+y+hd+p++++  +qy+p+e++++++Y+pt+rgle ki e+l++l
  CTQ27311.1 367 DVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAaGEQYFPQEMAQTRYYHPTNRGLEGKIGEKLAWL 434
                 *********************************8799**************************99875 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.2   4.2e-26   2.3e-23       3      81 .]     188     267 ..     186     267 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 4.2e-26
                  X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHH CS
  AAA_assoc_2   3 kklkleddalealaeladGDaRkaLnlLElaaeaaeak.egkieitledleealqrkalryDkagdehYdliSAlhKSiR 81 
                  +++ l d++++a+ael +GDaR+aLn+LE++a++ae++ +gk++++ e l+e++ ++++r+D++gd +YdliSAlhKS+R
   CTQ27311.1 188 QDIILPDETRRAIAELVNGDARRALNTLEMMADMAESDdSGKRVLKAELLTEIAGERSARFDNKGDRFYDLISALHKSVR 267
                  568899***************************99988789999***********************************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0     7e-20   3.8e-17       1     126 [.      53     159 ..      53     165 .. 0.91
   2 ?    0.2   0.1       1.7   9.2e+02      45      99 ..     169     225 ..     164     253 .. 0.61

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 7e-20
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS...TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakeka...kpsilfiDEidalaksrsgseseeeervvnqLlteldgv 96 
                 ++l+GppGtGKT+la+ +a+ +++++ +is+ +          k+ire +++a++++   + +ilf+DE+++++ks+           ++++l+++++ 
  CTQ27311.1  53 MILWGPPGTGKTTLAEVIARYASADVERISAVTSG-------VKEIREAIERARQNRnagRRTILFVDEVHRFNKSQ-----------QDAFLPHIEDG 133
                 79***************************998777.......99999999999999999767***************...........**********9 PP

                 TTSSSTEEEEEEESS..GGGSTHHHHSTTSSE CS
         AAA  97 kkkeskvivigatnr..pdkldpallrgRfdr 126
                 +      ++igat++    +l++all +R+ +
  CTQ27311.1 134 TI-----TFIGATTEnpSFELNSALL-SRARV 159
                 88.....8*****99888999*****.88765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHTS.....TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA  45 kirelfkeakeka.....kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +i+ ++++a + +     ++ i++ DE  + + +     +++++r++n+L  + d  +++
  CTQ27311.1 169 DIERVLDQAMNDKtrgygGQDIILPDETRRAIAEL---VNGDARRALNTLEMMADMAESD 225
                 56666666644445556555777777777766666...5666777777776666655554 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   8.4e-17   4.5e-14       1     116 [.      20     138 ..      20     157 .. 0.79

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 8.4e-17
      RuvB_N   1 lrPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklk....itsgP.vlekagdlaalltnleekdvlfideih 94 
                 +rP++l++yigq+++ +  k + +a ++   +l  ++l GpPG Gkttla++ia+   ++++    +tsg   + +a + a    n  ++ +lf+de+h
  CTQ27311.1  20 MRPENLAQYIGQQHLLAPGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYASADVErisaVTSGVkEIREAIERARQNRNAGRRTILFVDEVH 116
                 79************98776655555443..457889******************988887761112455532477777888888899999********* PP

      RuvB_N  95 rlsraveevlysamedfrldiv 116
                 r++++ ++ + + +ed ++  +
  CTQ27311.1 117 RFNKSQQDAFLPHIEDGTITFI 138
                 ****************998754 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   7.1e-07   0.00039      19      52 ..      45      82 ..      41     227 .. 0.74
   2 ?    1.5   0.0      0.64   3.5e+02      35     107 ..     227     323 ..     226     365 .. 0.57

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 7.1e-07
      AAA_16 19 vrsgrpelvllsGesGvGKsslvrellralekd....g 52
                + +g  ++++l G++G+GK++l++ ++r++++d     
  CTQ27311.1 45 IEAGHLHSMILWGPPGTGKTTLAEVIARYASADveriS 82
                55677799********************9999954330 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.64
      AAA_16  35 vGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala........................... 106
                 +GK  l  ell+++ +++   +  k d++      + l++al + ++        + +++ +w +++ +a +                           
  CTQ27311.1 227 SGKRVLKAELLTEIAGERSARFDNKGDRF------YDLISALHK-SVRGS-----APDAALYWYARIITAGGdplyvarrclaiasedvgnadpramqv 313
                 68999999999999999543344444444......445555533.33333.....33458888888888877777777777776666666666666666 PP

      AAA_16 107 .........a 107
                           
  CTQ27311.1 314 aisawdcftR 323
                 6666665553 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   1.8e-08   9.9e-06       2     102 ..      53     143 ..      52     181 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.8e-08
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SS CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleegg 100
                 ++L GppGtgK++lae +a+   + ve +        ++++  +e              r+a +  il++DEv+r +++ ++++l+ +e+ ++ +   +
  CTQ27311.1  53 MILWGPPGTGKTTLAEVIARYASADVERISAVT-SGVKEIREAIE---------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGAT 141
                 79*******************988887765544.34556666666.........355567788999************************999866544 PP

                 SE CS
       AAA_5 101 el 102
                 ++
  CTQ27311.1 142 TE 143
                 44 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   2.4e-06    0.0013      19      44 ..      47      72 ..      41     105 .. 0.76
   2 !    8.7   0.0    0.0018         1     107     142 ..     107     142 ..      94     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.4e-06
  Mg_chelatase 19 aaGgHnlllvGppGsGKtmlakrlps 44
                  a   H+++l GppG+GKt la+ ++ 
    CTQ27311.1 47 AGHLHSMILWGPPGTGKTTLAEVIAR 72
                  4446*****************98765 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0018
  Mg_chelatase 107 nGvLfLDElpefkrkvlevLRePledgevtisraka 142
                   + +Lf+DE+  f+++  +++   +edg++t   a++
    CTQ27311.1 107 RTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATT 142
                   679**************************9765544 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0043       2.3      23      52 ..      51      80 ..      39      99 .. 0.78
   2 !   15.5   0.0   1.9e-05      0.01      93     131 ..     106     144 ..      92     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0043
                     S-EEEECSTTSSHHHHHHHHHHHSTTTTS- CS
  Sigma54_activat 23 lsvlitGesGtGKellaraiheaskrkekp 52
                      s+++ G  GtGK++la+ i +  + + ++
       CTQ27311.1 51 HSMILWGPPGTGKTTLAEVIARYASADVER 80
                     467889*************98876655554 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.9e-05
                      TTSEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEE CS
  Sigma54_activat  93 dgGtlfLDeigelplelQekLlrvlqegevervGsskei 131
                         +lf+De+++++ + Q  +l  +++g+++ +G+++e 
       CTQ27311.1 106 RRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTEN 144
                      5679******************************98765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   0.00012     0.066       7      27 ..      52      72 ..      47      85 .. 0.82
   2 !    8.7   0.1    0.0038       2.1      75     112 ..      88     127 ..      77     144 .. 0.74
   3 ?    0.1   0.0       1.7     9e+02      72     119 ..     167     224 ..     135     235 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00012
      AAA_22  7 ilvvtGesGtGKTtllrrlle 27
                +++++G++GtGKTtl++ +++
  CTQ27311.1 52 SMILWGPPGTGKTTLAEVIAR 72
                689************986554 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0038
      AAA_22  75 seellealeqalrarav..ielliiDEaqhlrseealeeL 112
                  +e++ea+e+a ++r +  + +l +DE++++++ ++  +L
  CTQ27311.1  88 VKEIREAIERARQNRNAgrRTILFVDEVHRFNKSQQDAFL 127
                 56677777777777777888***********844444444 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.7
      AAA_22  72 rlsseell.ealeqalraravielliiDEaqhlr....s...eealeeLrsllnl..s 119
                 +++ e++l +a+++  r ++ + +++ DE  + +    +    +al++L ++++   s
  CTQ27311.1 167 TDDIERVLdQAMNDKTRGYGGQDIILPDETRRAIaelvNgdaRRALNTLEMMADMaeS 224
                 4566677767777777777778888889988844455515568888888888776543 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.5   6.2e-06    0.0034      21     157 ..      53     173 ..      42     226 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.2e-06
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtkqlaallkaaekagakv 119
                 ++l Gp+GtGKtt+ +++++ + a+ +r+ +++      k+++e+++       +      +  +  ++t+l vDE+   + +q +a+l ++e+   ++
  CTQ27311.1  53 MILWGPPGTGKTTLAEVIARYASADVERISAVT---SGVKEIREAIE-------RAR----QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTI 135
                 7899**************999998755555444...34456665533.......222....222234678899999999988888888888887..778 PP

      AAA_30 120 ilvGDerQlasVeaGgvlrdlveaagigtaeLtevvRq 157
                  ++G +   +s e  ++l + ++    ++ + +++ R 
  CTQ27311.1 136 TFIGATTENPSFELNSALLSRARVYLLKSLTTDDIERV 173
                 88887777777766666555544444455555555555 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.4e-06   0.00079       2      99 ..      53     143 ..      51     152 .. 0.87
   2 ?   -2.0   0.0       5.6   3.1e+03      66      77 ..     191     202 ..     180     237 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.4e-06
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanllladeinrappktqsalleameerqvtvegethk 99 
                 ++l g PG++kt+l++ +a+  +++++ri   +        G++ ++e+ ++ + ++ +    +l++de+ r +   q a+l  +e+ ++t+ g+t++
  CTQ27311.1  53 MILWGPPGTGKTTLAEVIARYASADVERISAVT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTE 143
                 578899***********************7543.......57777788877778888888899****************************9998876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.6
       AAA_3  66 lladeinrappk 77 
                 +l de  ra + 
  CTQ27311.1 191 ILPDETRRAIAE 202
                 555555555432 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   5.6e-05      0.03       4      51 ..      44      87 ..      42     100 .. 0.65
   2 ?    6.1   0.0     0.025        13      87     137 ..      91     140 ..      79     147 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.6e-05
      AAA_19  4 avealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaft 51
                a+ea + + +++ ++pGtGKT++ + i ++  ++    +e+i +v+  
  CTQ27311.1 44 AIEAGHLHSMILWGPPGTGKTTLAEVIARY-ASAD---VERISAVTSG 87
                56556667899**********866555544.4443...3677777754 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.025
      AAA_19  87 alelleeaeeekklqeeellivDEfqdvd.elqyrLlkallgekkklllvGD 137
                   e++e+a+++++  ++++l+vDE+   +  +q ++l  +  +++ ++++G 
  CTQ27311.1  91 IREAIERARQNRNAGRRTILFVDEVHRFNkSQQDAFLPHIE-DGT-ITFIGA 140
                 445555555555565788***********888889999888.777.999995 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.7e-06   0.00093      49     126 ..      52     124 ..      47     129 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.7e-06
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvr..vedLveelkrarrdgklaralkrllkvdllilDdlgllpldqae 126
                 +++l Gp+G+GK+ la  +++ a ++  +++ v+  v+++ e ++r       ar+ ++  + ++l +D++   + +q++
  CTQ27311.1  52 SMILWGPPGTGKTTLAEVIARYASADVERISAVTsgVKEIREAIER-------ARQNRNAGRRTILFVDEVHRFNKSQQD 124
                 689******************9998777665444224444444444.......445555566677777777666666665 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.4e-06    0.0018       5     109 ..      52     136 ..      49     153 .. 0.87
   2 ?   -1.6   0.0       4.8   2.6e+03      18      51 ..     195     229 ..     168     241 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.4e-06
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHHH CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqil 103
                 s++l gp g+Gkt la+ +a++ ++     + r+ a +        + + + i  +  + +a  + i+++DE+ +  +             q+++L+ +
  CTQ27311.1  52 SMILWGPPGTGKTTLAEVIARYASA----DVERISAVTSGV-----KEIREAIERARQNRNAGRRTILFVDEVHRFNK-----------SQQDAFLPHI 130
                 78899******************96....788888877777.....778999999999999999**************...........7788999999 PP

                 H--EE- CS
       AAA_2 104 eggtlt 109
                 e+gt+t
  CTQ27311.1 131 EDGTIT 136
                 999998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.8
                 HHHHHHHHHTT-....-EEEEEGGG---.----TH CS
       AAA_2  18 elakalaellfvkkekkliradaselle.eeeveh 51 
                 e+ +a+ael + + +++l ++++ + +  ++++ +
  CTQ27311.1 195 ETRRAIAELVNGDARRALNTLEMMADMAeSDDSGK 229
                 46677778877777778888887765552444444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.8e-06    0.0021       5     120 ..      53     160 ..      51     181 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.8e-06
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpewek.alkslvdegknldvivtGSns 102
                 +++ G+  +GKTtl++ +++       ++  i+  +   k++++   ++++ +++  + ++t+lf DE+++ ++ ++ a    +++   + + + G   
  CTQ27311.1  53 MILWGPPGTGKTTLAEVIARYAS---ADVERISAVTSGVKEIREA--IERARQNRNAG-RRTILFVDEVHRFNKSQQdAFLPHIED---GTITFIGATT 142
                 688999********988887766...7777777777777776655..55555665445.99**********977554122222222...3555555555 PP

      AAA_14 103 kllskeiatslagrvaei 120
                  + s e+++ l  r+ ++
  CTQ27311.1 143 ENPSFELNSALLSRARVY 160
                 555555555555555555 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.013       7.3      25      50 ..      51      75 ..      23      82 .. 0.78
   2 !   10.0   0.1    0.0012      0.66     116     149 ..      93     122 ..      76     144 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
                SEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII 25 krglikmaTGtGKTlvaaklierllk 50
                + ++++ + GtGKT + a++i+r+++
  CTQ27311.1 51 HSMILWGPPGTGKTTL-AEVIARYAS 75
                46789*********76.566666654 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0012
                 HTH........HHHTTT-SEEEEETGGGTTS.TT CS
      ResIII 116 adseeeeeeseellrdrfdviiiDEaHrlgakks 149
                 +++   e++++    +r  ++++DE+Hr+++ ++
  CTQ27311.1  93 EAI---ERARQNRNAGRRTILFVDEVHRFNK-SQ 122
                 223...7788888889999***********9.43 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.9e-06    0.0021      25     110 ..      54     144 ..      45     167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.9e-06
                      EEEEETT--HHHHHHCC--TTS-EE.--SSTTHHHH-HHHHHHHT.......TTSEEEEEE-TT--HHHHHHHHHHHHHHTTTT-EEEEEEEE- CS
  Sigma54_activ_2  25 fltGekGsgkelvArlLhknsgpwl.eifvverlaklpldlleqa.......kggtLylkdiadlskaeqkeLlellakaeksslrlVstsskd 110
                       l G++G+gk++ A++++  ++ ++  i  v +++k+  + +e+a       +  +L++ +++ ++k++q   l  ++ +    + ++ ++ ++
       CTQ27311.1  54 ILWGPPGTGKTTLAEVIARYASADVeRISAVTSGVKEIREAIERArqnrnagRRTILFVDEVHRFNKSQQDAFLPHIEDG---TITFIGATTEN 144
                      588***************98776551688999999*********87777777899***************9988888776...66666666655 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.14        75       9      42 ..      41      73 ..      36      82 .. 0.83
   2 !   12.9   0.0   0.00013     0.073      66     161 ..      73     164 ..      68     166 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.14
  DNA_pol3_delta2  9 lskalksgrlahayLfeGdegigkkelalnlaka 42
                     l +a++ g+l h++++ G+ g+gk +la  +a+ 
       CTQ27311.1 41 LPRAIEAGHL-HSMILWGPPGTGKTTLAEVIARY 73
                     6678888988.577889***********999876 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00013
  DNA_pol3_delta2  66 gkhpDvivieteekersikldqirelieelsrkpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnkl..LktirSRcqel 157
                      +   Dv  i+   +     + +ire ie++ ++   +++ i+ ++++ + +ks + a+L  +E+    ++fi  t+++ ++     + SR  ++
       CTQ27311.1  73 YASADVERISAVTS----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFelNSALLSRARVY 160
                      55566666666555....799******************************************97..555555554444433267788888887 PP

  DNA_pol3_delta2 158 kfsp 161
                       +++
       CTQ27311.1 161 LLKS 164
                      7776 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00022      0.12       2      26 ..      54      78 ..      53      94 .. 0.83
   2 ?    2.3   0.0      0.39   2.1e+02      37      94 ..     175     230 ..     151     238 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00022
  RNA_helicase  2 wlyGpsgeGKStlakeLakallkkl 26
                  +l+Gp+g+GK+tla+ +a+  + ++
    CTQ27311.1 54 ILWGPPGTGKTTLAEVIARYASADV 78
                  799*************999877665 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.39
  RNA_helicase  37 rnpeddfwdgYtgqevvvidDfgqvkdeenpsdlaelirlvsstpyplnmasleekg.t 94 
                    ++ +d   gY gq++++ d+  +   e       +  r+ ++ +++ +ma+ ++ g +
    CTQ27311.1 175 DQAMNDKTRGYGGQDIILPDETRRAIAE---LVNGDARRALNTLEMMADMAESDDSGkR 230
                   5667788899******999999998876...4566778888999999999998888744 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.2e-05    0.0065      14      67 ..      53     101 ..      44     211 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.2e-05
                 EEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe 67 
                 + + G+ G+GK+tL++++a+  + + ++i      +ke      r+ i+   q+
  CTQ27311.1  53 MILWGPPGTGKTTLAEVIARYASADVERISAVTSGVKE-----IREAIERARQN 101
                 5689*********************9999555555544.....33333333333 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.3e-05     0.007       4      42 ..      52      89 ..      51     126 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.3e-05
      AAA_24  4 kiliyGpsgiGKTtlakelgpkplfidtekGlksldadk 42
                +++++Gp+g+GKTtla  +  + +  d+e+ ++ + + k
  CTQ27311.1 52 SMILWGPPGTGKTTLAEVI-ARYASADVERISAVTSGVK 89
                589**************99.9999999999555555554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   5.5e-05      0.03       3      32 ..      54      85 ..      53     127 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.5e-05
      AAA_33  3 llvGlpGsGKstlaerllkklg..avllssdt 32
                +l G+pG+GK+tlae +++     ++++s  t
  CTQ27311.1 54 ILWGPPGTGKTTLAEVIARYASadVERISAVT 85
                788************99876666666666555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.8e-05     0.032       3      45 ..      54     109 ..      52     132 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.8e-05
      AAA_28   3 vitGgestGKTtlleaLaar.............gypvvpEaareileeklakgeda 45 
                 ++ G+++tGKTtl+e +a+              g++ ++Ea  +  +++ a ++ +
  CTQ27311.1  54 ILWGPPGTGKTTLAEVIARYasadverisavtsGVKEIREAIERARQNRNAGRRTI 109
                 789*************9954333344344444455555555555555555555444 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.3e-05     0.013      54     122 ..      51     122 ..      20     137 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.3e-05
      DUF815  54 nnvLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellr...erperfilfvDDLs.Feeee 122
                 + ++LwG  GtGK +l   ++++ya++ +  i    + +ke+ + +e  r   ++ +r ilfvD +  F++++
  CTQ27311.1  51 HSMILWGPPGTGKTTLAE-VIARYASADVERISAVTSGVKEIREAIERARqnrNAGRRTILFVDEVHrFNKSQ 122
                 6799*********99976.55677777777777777778888877776663336779*******985365554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   5.3e-05     0.029       2      21 ..      54      73 ..      53     127 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.3e-05
      AAA_18  2 lltGtpGvGKttlakeLskr 21
                +l G+pG+GKttla+ +++ 
  CTQ27311.1 54 ILWGPPGTGKTTLAEVIARY 73
                688************99875 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00013     0.069      17      79 ..      53     115 ..      47     138 .. 0.86
   2 ?   -1.4   0.0       2.7   1.5e+03     123     152 ..     409     438 ..     407     444 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                  EEEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEEHHHHHHHHHHCHHSS.GGGGEEEEEEET CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  ATP-synt_ab  17 tlipgafgvGktvisqslskqsnsddaiiyvgiGergnevaevleefpegt.imkrtvlvants 79 
                  +++ g  g+Gkt++++ +++++++d +  + ++    +e++e +e+ ++++ + +rt+l++ + 
   CTQ27311.1  53 MILWGPPGTGKTTLAEVIARYASAD-VERISAVTSGVKEIREAIERARQNRnAGRRTILFVDEV 115
                  5678999**************9777.877888888899********999766999999998765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.7
                  HHHHHTTTSBEGGGSBTTHHHHHHHHHTTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 123 eislrlgempadqgypaylgaklaslyERa 152
                  e++      p+++g  +++g kla l E+ 
   CTQ27311.1 409 EMAQTRYYHPTNRGLEGKIGEKLAWLAEQD 438
                  6677777789**************999975 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.8e-05     0.043      19      42 ..      52      74 ..      39     114 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.8e-05
      AAA_11 19 itliqGPPGtgKTktivellsqll 42
                  +++GPPGtgKT+   e++++ +
  CTQ27311.1 52 SMILWGPPGTGKTTLA-EVIARYA 74
                5689********9654.4444443 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0    0.0002      0.11      34      53 ..      51      70 ..      26     117 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
      AAA_25 34 elallaGapgtGKttlaldl 53
                +  +l+G+pgtGKttla  +
  CTQ27311.1 51 HSMILWGPPGTGKTTLAEVI 70
                4679************9655 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0     0.004       2.2      28      58 ..      43      73 ..      18      83 .. 0.75
   2 ?    0.1   0.0      0.82   4.4e+02     154     175 ..      80     101 ..      74     111 .. 0.89
   3 ?   -0.3   0.0       1.1   6.2e+02     121     143 ..     108     127 ..     103     132 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.004
        TniB 28 eypkrkrmpnlllvGdsnnGKtmivekFarl 58
                ++ ++   ++++l+G++ +GKt+++e  ar 
  CTQ27311.1 43 RAIEAGHLHSMILWGPPGTGKTTLAEVIARY 73
                556677789**************99866654 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.82
        TniB 154 kipivlvGteealralrtDpql 175
                 +i+ v+ G++e+ +a+++  q 
  CTQ27311.1  80 RISAVTSGVKEIREAIERARQN 101
                 79**************999885 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.1
        TniB 121 rvLiiDEihnllagsarkqrefl 143
                  +L +DE+h++     ++q +fl
  CTQ27311.1 108 TILFVDEVHRFN---KSQQDAFL 127
                 5899*****987...55566665 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00061      0.33       3      23 ..      53      73 ..      51      84 .. 0.86
   2 ?   -2.3   0.0       6.6   3.6e+03     137     163 ..     152     178 ..     136     181 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00061
                EEEEC-TTTCHHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklala 23
                +il G++G GKTtL++ +a+ 
  CTQ27311.1 53 MILWGPPGTGKTTLAEVIARY 73
                8999***********999975 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.6
                 TTSSCE..EEEE--TCCHHHHHHHHCT CS
       NACHT 137 eqleeaivlevegfsesrrkqlvrkyf 163
                  +l++a+v+ +++++ +++++++ + +
  CTQ27311.1 152 ALLSRARVYLLKSLTTDDIERVLDQAM 178
                 456777899999999999998887655 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00048      0.26       2      37 ..      53      87 ..      52     139 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00048
                EEEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEE CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkssgvkvgGfytee 37
                +++ GppG+GKtTl + +++   s +v+    +t+ 
  CTQ27311.1 53 MILWGPPGTGKTTLAEVIARYA-SADVERISAVTSG 87
                5788***********9999887.4555544444444 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.5    0.0026       1.4       7      83 ..      56     124 ..      51     131 .. 0.57
   2 ?   -1.5   0.0       2.1   1.2e+03     162     182 ..     240     280 ..     175     286 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0026
     DUF2075   7 tGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeek 83 
                  G +GtGKt ++  ++  + + + er +++ s+    v+ +rea+++ +   + ++a ++   f+ ++++f+k +++
  CTQ27311.1  56 WGPPGTGKTTLAEVIARYA-SADVERISAVTSG----VKEIREAIERAR---QNRNAGRRTILFVDEVHRFNKSQQD 124
                 5888888888887777776.4455555555555....444455554444...4444555555666666655555544 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.1
     DUF2075 162 v....................hLksqfRvaaseaviewvda 182
                 +                     L++++R +a++a + w  +
  CTQ27311.1 240 IagersarfdnkgdrfydlisALHKSVRGSAPDAALYWYAR 280
                 03333333333335555555567777777777777777655 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0017      0.94     118     136 ..      54      72 ..      46     108 .. 0.90
   2 ?   -1.0   0.0       1.3   7.3e+02      91     136 ..     283     339 ..     262     343 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0017
   Parvo_NS1 118 wfyGpantGktnlaeaIak 136
                  ++Gp+ tGkt lae Ia+
  CTQ27311.1  54 ILWGPPGTGKTTLAEVIAR 72 
                 68*************9985 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
   Parvo_NS1  91 lngynpvevgqvllawlskqlgkrntvwfy............GpantGktnlaeaIak 136
                 + g +p++v+   la++s++ g+ +   +             Gpa+ G   +a+aI++
  CTQ27311.1 283 TAGGDPLYVARRCLAIASEDVGNADPRAMQvaisawdcftrvGPAE-GERAIAQAIVY 339
                 6677888888888888888888655333333335557777767765.77778888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 2977.05
//
Query:       CTQ27312.1  [L=430]
Description: seryl-tRNA synthetase; also charges selenocystein tRNA with serine [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-36  125.9   0.0    2.4e-36  125.4   0.0    1.2  1  tRNA-synt_2b   tRNA synthetase class II core domain (G, H, P,
    3.4e-33  114.1   3.7    5.8e-33  113.4   3.7    1.4  1  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain
  ------ inclusion threshold ------
      0.022   14.3   1.6       0.04   13.5   1.6    1.3  1  Filament       Intermediate filament protein
       0.11   12.7   0.8        1.1    9.5   0.0    2.4  3  I_LWEQ         I/LWEQ domain
       0.18   10.7   0.2       0.33    9.8   0.2    1.3  1  Apt1           Golgi-body localisation protein domain
       0.21   11.4   1.6       0.41   10.5   1.6    1.5  1  Phage_GP20     Phage minor structural protein GP20
       0.26   11.3   3.0       0.51   10.3   3.0    1.4  1  Stathmin       Stathmin family
       0.37   10.5   2.8       0.72    9.6   2.8    1.4  1  FAM184         Family with sequence similarity 184, A and B
       0.54   10.4   5.6       0.49   10.5   3.6    1.9  2  Tropomyosin_1  Tropomyosin like
        1.8    8.7   7.1        6.3    7.0   7.1    1.9  1  Cep57_CLD_2    Centrosome localisation domain of PPC89
        2.3    8.5   8.1        2.1    8.6   4.8    2.2  2  TMF_TATA_bd    TATA element modulatory factor 1 TATA binding


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   1.5e-39   2.4e-36       7     179 .]     228     406 ..     222     406 .. 0.94

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 1.5e-39
                   TSEEEEE-SSSHHHHHHHHHHHEEEBGGSSEEEEEEEEEEBTTTS....TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SCE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   7 ndreyiLkPtneetfvelirdevlrskrLPlklyqiqtkyRdEks....dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglefr 99 
                   +  +y+L+Pt+e ++++l+rde++ + +LP+k+++ ++++R E+     d+rGL+R+++F++ + + ++ ++++   l+++   ++++++ lgl++r
    CTQ27312.1 228 DSSNYALIPTAEVPLTNLVRDEIIDEDDLPIKMTAHTPCFRSEAGsygrDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYR 324
                   3579******************999999****************66999************************************************ PP

                   EEEEEGTTSCBTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTS.SEEEEEEEEEE.EEHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxxx RF
  tRNA-synt_2b 100 aiielmsaksadykdkkefeavsesltkgieigtiqklgtrlserlgatvldenn.reksvimicaa.igveRllsaileqn 179
                   ++ ++++++ +++ +++++e++++ ++ ++ei+++++  + +++r++a+   + + + + v++++ + ++v R+l a++e++
    CTQ27312.1 325 KVALCTGDMGFSACKTYDLEVWVPAQNTYREISSCSNVWDFQARRMQARCRSKSDkKTRLVHTLNGSgLAVGRTLVALMENY 406
                   *******9****************************************987665538899*****999***********986 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   3.7   3.5e-36   5.8e-33       1     108 []       1     107 [.       1     107 [. 0.99

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 3.5e-36
                   ---HHHHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   1 MLDiklirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleael 97 
                   MLD++l+r++p+av+ekl++R ++k+dvd+l +l+e+r+ lqv++e+lqaerN+ sk+Ig+ak+++ed+e l+ ev++l+e+l+a++ el++l ae+
    CTQ27312.1   1 MLDPNLLRTEPDAVAEKLARR-GFKLDVDKLRALEERRKVLQVQTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEQLDAAKSELETLLAEI 96 
                   ******************988.6************************************************************************** PP

                   HHHHCTS---- CS
  Seryl_tRNA_N  98 eklllaiPNip 108
                    +++laiPNip
    CTQ27312.1  97 RDIALAIPNIP 107
                   **********8 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.6   2.5e-05      0.04      17      87 ..      27      99 ..      23     104 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament 17 idkVraLEqenkeLeakieeleekksaevs..klkelyekeleelrkqldeltkerarlqleldnlreeledl 87
                +dk raLE+  k L+++ e+l+ +++++++  +  ++  + +e lr ++++l ++ + ++ el++l +e++d+
  CTQ27312.1 27 VDKLRALEERRKVLQVQTENLQAERNSRSKsiGQAKARGEDIEPLRLEVNKLGEQLDAAKSELETLLAEIRDI 99
                5889999999999999988888776444440144455667888888888888888888888888887777765 PP

>> I_LWEQ  I/LWEQ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.4      0.44   7.2e+02     108     135 ..      24      51 ..       6      62 .. 0.73
   2 ?   -1.0   1.0       1.2   1.9e+03     117     135 ..      33      51 ..      25      93 .. 0.54
   3 ?    9.5   0.0   0.00066       1.1      36      98 ..     350     412 ..     341     420 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.44
      I_LWEQ 108 eldisklslvqakrqemeaqvkilklek 135
                 +ld++kl++ + +r++++ q + l+ e+
  CTQ27312.1  24 KLDVDKLRALEERRKVLQVQTENLQAER 51 
                 4677777777777777777777777776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.2
      I_LWEQ 117 vqakrqemeaqvkilklek 135
                  + +r++++ q + l+ e+
  CTQ27312.1  33 LEERRKVLQVQTENLQAER 51 
                 3444444444443333333 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00066
      I_LWEQ  36 kakeeeLivaakevaastaqLvvasrvKadknskslkrLeaaskaVkkatkelvkavkeakek 98 
                 +++  e+ ++++    ++ ++++ +r K+dk+ +  + L+ ++ aV ++  +l+++ ++a+ +
  CTQ27312.1 350 QNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVALMENYQQADGR 412
                 56666777777777788889************************************9999865 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2    0.0002      0.33      74     154 ..      11      97 ..       6     121 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0002
        Apt1  74 ekerserlekimlasdfsdleglpemvkklqerirqleeikehfqieskyl........dkegw.edrlklekelaeceeeLfllmkait 154
                 ++ ++e+l +  ++ d+++l++l+e+ k lq +  +l+    +++ +sk +        d e +  +++kl ++l ++++eL +l+  i+
  CTQ27312.1  11 PDAVAEKLARRGFKLDVDKLRALEERRKVLQVQTENLQA---ERNSRSKSIgqakargeDIEPLrLEVNKLGEQLDAAKSELETLLAEIR 97 
                 567899999999**********************99944...333333322222334444444447777788888888888888887776 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.6   0.00025      0.41      17      79 ..      34      96 ..      14     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00025
  Phage_GP20 17 kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieelqaknkkakaeyeakiadl 79
                +++ + ++ + ++l+ + + r k++ + k+  +d e L  ++++l +++++ak+e e+ +a++
  CTQ27312.1 34 EERRKVLQVQTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEQLDAAKSELETLLAEI 96
                66778899999**********************************************988875 PP

>> Stathmin  Stathmin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.0   0.00032      0.51      48     113 ..      28      94 ..      26      98 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00032
    Stathmin  48 kKLeaAEeRRksleaqklkqlaekrekeeevl.qKaaeennnfskaaeeklkqkmeaskenreaqla 113
                 +KL+a EeRRk+l+ q+ + +ae++++ +++   Ka  e+ +  +   +kl +++ a k++ e  la
  CTQ27312.1  28 DKLRALEERRKVLQVQTENLQAERNSRSKSIGqAKARGEDIEPLRLEVNKLGEQLDAAKSELETLLA 94 
                 69***********************999999735777777777777778888877777777666665 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.8   0.00044      0.72     118     194 ..      17      95 ..       8     102 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00044
      FAM184 118 qfaqlqeqleqekekaLeelrkkhreeveeLlkeqeaqsekllkeqekle..ekhkaeveklkeeveelekekkklvee 194
                 ++a    +l+ +k +aLee rk  + + e+L+ e++++s+++ + +++ e  e ++ ev+kl e++++ ++e + l +e
  CTQ27312.1  17 KLARRGFKLDVDKLRALEERRKVLQVQTENLQAERNSRSKSIGQAKARGEdiEPLRLEVNKLGEQLDAAKSELETLLAE 95 
                 56666668899*****************************999999888611568999999998888887777776665 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.6    0.0003      0.49      35     106 ..      28      99 ..      15     105 .. 0.93
   2 ?   -1.6   0.0       1.7   2.8e+03      85     100 ..     223     238 ..     220     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0003
  Tropomyosin_1  35 qeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkettekLret 106
                    ++++ L+++ ++l+ + e+l+++ +   ++  +++ +  + e l   ++ L e+l+ + ++L++ +  +r++
     CTQ27312.1  28 DKLRALEERRKVLQVQTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEQLDAAKSELETLLAEIRDI 99 
                    56899**********************************************************999988886 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.7
  Tropomyosin_1  85 LEeeleesdkkLkett 100
                    LEee+++s+  L  t 
     CTQ27312.1 223 LEEEADSSNYALIPTA 238
                    9******998887665 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   7.1    0.0039       6.3      11      64 ..      29      85 ..      25      95 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0039
  Cep57_CLD_2 11 rLdsltrklqvheeelkrLnkERdsalrqLgvA...yeelneLkaevealrkELkeq 64
                 +L  l+++  v +   ++L +ER+s  +++g+A    e+++ L+ ev+ l ++L+  
   CTQ27312.1 29 KLRALEERRKVLQVQTENLQAERNSRSKSIGQAkarGEDIEPLRLEVNKLGEQLDAA 85
                 7788899999999*******************7555578888999999998887654 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.8    0.0013       2.1      20      84 ..      29      93 ..      27      97 .. 0.96
   2 ?    0.2   0.1      0.53   8.7e+02      67      88 ..     299     320 ..     283     321 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0013
  TMF_TATA_bd 20 eirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlL 84
                 ++r lE   + l+ + e+l+aer++ ++ i +  ++ e+ + l  e+++l ++l++ ++++etlL
   CTQ27312.1 29 KLRALEERRKVLQVQTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEQLDAAKSELETLL 93
                 6899***********************************************************99 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.53
  TMF_TATA_bd  67 eelekeleelqeryetlLellG 88 
                  e+  + lee++ + e++L+llG
   CTQ27312.1 299 EDSMAALEEMTGHAEKVLQLLG 320
                  5666789999999999**9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3222.62
//
Query:       CTQ27313.1  [L=812]
Description: dimethyl sulfoxide reductase, anaerobic, subunit A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     3e-108  362.6   0.0   3.5e-108  362.3   0.0    1.1  1  Molybdopterin    Molybdopterin oxidoreductase
    1.3e-28   99.2   0.0    4.1e-28   97.6   0.0    1.9  2  Molydop_binding  Molydopterin dinucleotide binding domain
    4.7e-18   64.9   1.2    8.8e-18   64.1   1.2    1.5  1  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.3   0.0  5.9e-112  3.5e-108       1     432 []     117     574 ..     117     574 .. 0.95

  Alignments for each domain:
  == domain 1  score: 362.3 bits;  conditional E-value: 5.9e-112
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEE...EEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHH.... CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvag...fssgplmsmeslaslkkllsllggknlsfydwyadlppasaq.... 89 
                    RlkyPm+R+++rgeGkF+++sW+eAl++ia++++++ik+yg++++++   +++ + + + s+  +k+l+++l+++++++ ++y+d++ a+++    
     CTQ27313.1 117 RLKYPMKRVGKRGEGKFEQISWEEALDTIASNMQRLIKEYGNESIYLnygTGTLGGTLTRSWPPGKTLIARLMNCCGGYLNHYGDYSSAQIAagln 212
                    9********************************************9997788899999*****************************999999998 PP

                    CHHCCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHH..HHHTTC..-EEEEECSSB-H.CGGGCSEEEEEHTTTHHHHHHHHHHHH CS
  Molybdopterin  90 qtigsdsrsnyessnpledlensdliilwGsNvreerpilnarirk..aalkkk..akvivigpryae.llkfadewlaikpgtdaalalamghvi 180
                    +t+g+  ++ ++ s    d+ens+l++l+G+N+ e+r+   + +++  +a++ k  a++i+i+pry++  + ++dew++i+pgtdaal+ +++ v+
     CTQ27313.1 213 YTYGGW-ADGNSPS----DIENSQLVVLFGNNPGETRMSGGGVTYYleQARQ-KsnARMIIIDPRYTDtGAGREDEWIPIRPGTDAALVSGLAWVM 302
                    888775.5555555....9*********************555544113333.247************9899************************ PP

                    HHCCCCTCHHHHHHEECHHHCCCCCCCEECCS...................HHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHH CS
  Molybdopterin 181 lqelkvdkeflrkytygkeetdmpllvtleee...................tgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyr 257
                    ++e++vd++fl+ky++g++e++ p  +  +++                   ++ +++++ +++ +lar++a +++ + i++G+g +++++g+ + r
     CTQ27313.1 303 ITENLVDQPFLDKYCVGYDEKTLPAGAPANGHykayilgqgtdgiaktpewASTITGIPRERIVKLAREIATAKP-AYISQGWGPQRHANGEIATR 397
                    ***************************************************************************.******************** PP

                    HHHHHHHHCTHCSSTTCEEEEESSCTTHHHCHHHHTCCTTCCCCCCCTT........HHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEE CS
  Molybdopterin 258 avinLallvgnvgqpgGgwahlnGqlilagaaekvgalpvllsvkslke........ekikfaaeqpgnlgnfprnlfversnllkssgkkvlyll 345
                    a+ +La+l+gnvg +gG+ ++ +G+++l+++++++ ++pv++s++++++        e++++++  +g+ ++  +++++             ++++
     CTQ27313.1 398 AISMLAILTGNVGINGGNSGAREGSYSLPFERMPTLENPVETSISMFMWtdaiergpEMTALRDGVRGKDKLDVPIKMI-------------WNYA 480
                    ******************************************************************************9.............89** PP

                    SH.HHHHSTTSCCCHCHHH...CSSEEEEEESCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEE....EEESSS-STT-BEHHHHHHHHHHH CS
  Molybdopterin 346 gnnpevdhadenevekale...kldlvvvldgrltstalyaDiiLPaatwyEkedlytndegrfqh....lkqavsppgeaksdwkIlkaLakk 432
                    gn+ +++h+++n++++ l+   k++++vv+d+++ts+a+yaDi+LP++t  E++d+  ++++ +++    ++qa++p++e+k+ +++ ++Lak+
     CTQ27313.1 481 GNCLINQHSEINRTHEILQddkKCEMIVVIDCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSyvifADQAIKPRFECKTIYEMTSELAKR 574
                    *****************99999***********************************************9**********************96 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.8   1.1e+04      33      46 ..     566     579 ..     559     580 .. 0.83
   2 !   97.6   0.0   6.9e-32   4.1e-28       1     109 [.     693     804 ..     693     806 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.8
                      EEEHHHHHHHT--T CS
  Molydop_binding  33 einpedAaalGikd 46 
                      e+  e A++lG+++
       CTQ27313.1 566 EMTSELAKRLGVEE 579
                      799999*****987 PP

  == domain 2  score: 97.6 bits;  conditional E-value: 6.9e-32
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC..........S- CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpepevveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwwe.....agekggn 89 
                      l+L+  +++ ++hs++ + +vl++a +++   +inp dA+++Gi++Gd+++++++rG+v  +akvt+r++pGvv++  g+w+     +++++g+
       CTQ27313.1 693 LQLTGFHYKSRVHSTYGNVDVLKAACRQE--MWINPIDARKRGIANGDRIRIFNDRGEVHIEAKVTPRMMPGVVALGEGAWYnpdasRVDQAGS 784
                      789***********************995..*************************************************************** PP

                      GHCTS--SCSTTT--CSTT- CS
  Molydop_binding  90 aNaltddatdplsgtpefks 109
                      +N+lt  + +pl+++++ ++
       CTQ27313.1 785 INVLTTQRPSPLAKGNPSHT 804
                      ***************99987 PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   1.2   1.5e-21   8.8e-18       1      55 []      54     114 ..      54     114 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 1.5e-21
                     SEEEEEE-S.SBTT--EEEEEEETTEEEEEEE-TTSTTTT.....T---HHHHTCHHCCCB CS
  Molybdop_Fe4S4   1 ekvvktaCp.yCgvgCglevhvkdgkivkvegdpdhpvne.....grlCvKGrtllervyn 55 
                     ekvv++aC+ +Cg++C+l++hv+dg i++ve+d+++++n+     +r+C++Gr++++rvyn
      CTQ27313.1  54 EKVVWSACTvNCGSRCPLRMHVVDGAIKYVETDNTGDDNYdglhqVRACLRGRSMRRRVYN 114
                     69*********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 6068.29
//
Query:       CTQ27314.1  [L=277]
Description: dimethyl sulfoxide reductase, anaerobic, subunit C [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.6e-100  335.4  21.7     3e-100  335.3  21.7    1.0  1  DmsC             DMSO reductase anchor subunit (DmsC)
  ------ inclusion threshold ------
      0.075   13.6   0.0       0.17   12.5   0.0    1.5  1  Anti-adapt_IraP  Sigma-S stabilisation anti-adaptor protein
       0.12   12.3   0.2       0.12   12.3   0.2    2.8  3  CAAD             CAAD domains of cyanobacterial aminoacyl-tRN
        1.5    8.4  37.9      0.013   15.1  11.4    3.1  3  DUF998           Protein of unknown function (DUF998)


Domain annotation for each model (and alignments):
>> DmsC  DMSO reductase anchor subunit (DmsC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.3  21.7  6.6e-104    3e-100      10     276 .]       1     267 [.       1     267 [. 1.00

  Alignments for each domain:
  == domain 1  score: 335.3 bits;  conditional E-value: 6.6e-104
        DmsC  10 vfFtvlaqavvGafillalllllgknqalprevvlvgmfvlliLlgiGliasilHLGsplRAfnalnrvgsSwLSrEivagaiffalagliwLvavlkk 108
                 ++Ftv++q+vvG+fi+lal+l++gk + + +++v+ +m  l++L+giG+ias++HLGsplRAfn+lnrvg+S LS+Ei++gaiffa++g+ wL+av kk
  CTQ27314.1   1 MVFTVFGQCVVGGFIVLALALMTGKLSREQEQRVVGSMLGLWVLMGIGFIASTMHLGSPLRAFNSLNRVGASSLSNEIASGAIFFAVGGIGWLLAVCKK 99 
                 68***************************9********************************************************************* PP

        DmsC 109 lskaleklllivtailgiifvymmamvYasiktvptWhsgyTllaflltvlltGsvllyallqaakvatvavlalpllavlaltlaaivtvlqgaslrs 207
                 l+ +l++l+l+vt++lg+ifv+mm++vY++i+tvptW++ +T l+f+lt++++G++l+y+ll++a+v+ +a+++lp+++ lal+++ +v v+qg +l++
  CTQ27314.1 100 LPAGLRSLWLVVTMVLGVIFVWMMVRVYNTIDTVPTWYTVWTPLSFFLTLFIGGPLLGYLLLRVAGVDGWALRLLPVVSLLALLVSIMVVVMQGSELAT 198
                 *************************************************************************************************** PP

        DmsC 208 iessvqeanalvpeyatlrvlrlvllfvllllllaalfalkvpnvallvlavllilagelieRtlfYgl 276
                 i ssvq+a+alvp+y+ ++++r+vll+++l+++ +++++ ++p+v ll la++lilage+i+R +fYgl
  CTQ27314.1 199 IRSSVQQASALVPDYGLFMAWRVVLLALALACWCVPQIRGRKPAVSLLGLAFVLILAGEMIGRGVFYGL 267
                 ********************************************************************7 PP

>> Anti-adapt_IraP  Sigma-S stabilisation anti-adaptor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.8e-05      0.17       7      57 ..     158     208 ..     154     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.8e-05
  Anti-adapt_IraP   7 elLvklakkeeeskeLtaqVealelllsallltlskekvqeliesvekain 57 
                       lL+++a  +  + +L   V  l+ll+s ++  ++ +++ ++ +sv++a +
       CTQ27314.1 158 YLLLRVAGVDGWALRLLPVVSLLALLVSIMVVVMQGSELATIRSSVQQASA 208
                      699*********************************************966 PP

>> CAAD  CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   2.6e-05      0.12      13      41 ..     106     134 ..      96     141 .. 0.89
   2 ?   -2.0   0.9      0.76   3.4e+03      25      54 ..     159     188 ..     146     195 .. 0.64
   3 ?   -2.4   0.0      0.98   4.4e+03      14      29 ..     243     258 ..     238     261 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
        CAAD  13 klkviglilaaivalklalavldaiddiP 41 
                  l +++ ++++++++++++ v ++id +P
  CTQ27314.1 106 SLWLVVTMVLGVIFVWMMVRVYNTIDTVP 134
                 567889999*******************9 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.76
        CAAD  25 valklalavldaiddiPllpplleLvGlgy 54 
                 + l++a     a+  +P+++ l  Lv +++
  CTQ27314.1 159 LLLRVAGVDGWALRLLPVVSLLALLVSIMV 188
                 555566666666667777776666665555 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.98
        CAAD  14 lkviglilaaivalkl 29 
                 + ++gl++++i+a ++
  CTQ27314.1 243 VSLLGLAFVLILAGEM 258
                 5567777777777655 PP

>> DUF998  Protein of unknown function (DUF998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1  11.4   2.9e-06     0.013      45     156 ..       8     125 ..       3     138 .. 0.85
   2 ?    1.7   5.4     0.037   1.7e+02     111     155 ..     144     192 ..     139     207 .. 0.55
   3 ?    1.9  11.6     0.032   1.4e+02       3      85 ..     178     254 ..     176     275 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.9e-06
      DUF998  45 glvllgllvlalavgllraargragragrlllavaglglvlagvfptdpgggsp...........slsglvHglasavaflalavavlllasaarrraw 132
                  +v+ g+ vlala+ + + +r    r+++ +l++++l  ++ ++  ++ g+  +           sls+    +as++ f+a+    +lla    ++  
  CTQ27314.1   8 QCVVGGFIVLALALMTGKLSREQEQRVVGSMLGLWVLMGIGFIASTMHLGSPLRafnslnrvgasSLSNE---IASGAIFFAVGGIGWLLA--VCKKLP 101
                 68999******99988888**************999888888888888887666999*****77777776...688888888888888888..899999 PP

      DUF998 133 allrlvggvallllvaalvwllaa 156
                 a lr +++v++ +l +++vw++++
  CTQ27314.1 102 AGLRSLWLVVTMVLGVIFVWMMVR 125
                 99********************99 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.037
      DUF998 111 vaflalavavllla....saarrrawallrlvggvallllvaalvwlla 155
                  +fl l+++  ll+    + a+  +wal+ l  + +l+llv ++v++++
  CTQ27314.1 144 SFFLTLFIGGPLLGylllRVAGVDGWALRLLPVVSLLALLVSIMVVVMQ 192
                 5667777777766666434444444544444444444444444444443 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.032
      DUF998   3 aallalavilaaallrpgydplrhaiSeLgaeggpggwlfnaglvllgllvlalavgllraargragragrlllavaglglvl 85 
                   l++l++i++ +++++++  +r+ + + +a  ++ g ++++ +vll+l+++   v     ++ r++++++ ll++a +  +l
  CTQ27314.1 178 SLLALLVSIMVVVMQGSELATIRSSVQQASALVPDYGLFMAWRVVLLALALACWCV-----PQIRGRKPAVSLLGLAFVL-IL 254
                 4566677799999999999999999999999999******9999999998888555.....6666666666666633332.22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       943  (0.0525964); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2140.51
//
Query:       CTQ27315.1  [L=99]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 768.17
//
Query:       CTQ27316.1  [L=382]
Description: putative MFS-type transporter protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-26   93.2  50.7    2.1e-13   50.0  18.7    2.0  2  MFS_1       Major Facilitator Superfamily
    5.7e-11   42.3  33.8    1.4e-10   41.1  33.8    1.6  1  MFS_4       Uncharacterised MFS-type transporter YbfB
    1.7e-07   30.5  14.4    1.7e-07   30.5  14.4    3.2  2  Sugar_tr    Sugar (and other) transporter
    0.00041   19.3  31.0     0.0014   17.6   8.9    2.1  2  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
       0.35    9.4  34.0      0.011   14.4  11.0    3.1  3  MFS_2       MFS/sugar transport protein
       0.47   10.7   2.2       0.43   10.8   0.1    2.0  2  Nterm_IS4   Insertion element 4 transposase N-terminal
        4.7    5.5  27.6        1.7    7.0  13.8    2.1  2  MFS_3       Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2  24.2   1.3e-16   3.5e-13       1     185 [.      11     194 ..      11     206 .. 0.79
   2 !   50.0  18.7   8.1e-17   2.1e-13       6     172 ..     210     370 ..     205     381 .. 0.88

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.3e-16
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlg 98 
                 ll++++l +la+++l++++pl+la++ ++   ++g++ + y+ g ++++l++G+++ r+G  r ++l++l++ + + + l ++ ++w++l  r+++G+g
  CTQ27316.1  11 LLCGLLLLTLAIAVLNTLVPLWLAHE-NMPTWQVGMVGSSYFTGNLAGTLLAGWVIKRLGFNRsYYLASLIFAVGC-VGLGITVGFWTWLSWRFIAGVG 107
                 6899*****************99999.889999***************************6662666666666666.55555599************** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslg.Wravfyilaivsllafvlfllllpeepperkrkspk 185
                 +++++ ++ ++++   + + rgr ++ +++ + +G++lg l  + l  ++ +    +++   ++++++ +lf   + + + ++++++ +
  CTQ27316.1 108 CAMIWVVVESALVCSGTSRSRGRLLAAYMMVYYVGTVLGQLMVSKLPtDLMSvL--PWVTGLALAAILPLLFTRIMGQAEEPHETVRIW 194
                 ********99999999999********************555555541444433..333333333333336667777777777766655 PP

  == domain 2  score: 50.0 bits;  conditional E-value: 8.1e-17
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfp 104
                 ++s++  + l+ ++pl+l ++ g+s s ig+ +++   + ++++ p+Grl+dr+Gr  vl + +++ +lg+l++l  s+  +++ + ++ G+ + +l+p
  CTQ27316.1 210 IISGIVLGSLYGLMPLWL-NHQGVSDSGIGFWMAVMVSAGILGQWPVGRLADRYGRLLVLRVQVFVVILGCLAML--SQ-AAMAPALFVLGASGFTLYP 304
                 678888899999***666.666************************************************44444..33.369999999999999**** PP

       MFS_1 105 agaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll 172
                 +++a++ + + + +   ++  l +++ +G++lgp l ++l+++++  ++f+++a vs++ ++   ll 
  CTQ27316.1 305 VAMAWACEKVEHHQLVAMNQALLMSYTIGSLLGPTLTAMLMQNFSDNLLFIMIASVSFIYLL--TLLR 370
                 ************************************************************66..2333 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1  33.8   5.3e-14   1.4e-10      15     355 ..      28     362 ..      23     369 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 5.3e-14
       MFS_4  15 iLPallaegqlslsqagllaaaNylGYLvGallaafal.sagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaa 112
                 ++P  la  ++   q+g++++  + G L+G lla     + g +R   la+l+ +v   +  ++t +f+++l +Rf+aGv+ A++ v++ s  +   + 
  CTQ27316.1  28 LVPLWLAHENMPTWQVGMVGSSYFTGNLAGTLLAGWVIkRLGFNRSYYLASLIFAV-GCVGLGITVGFWTWLSWRFIAGVGCAMIWVVVESALVCSGTS 125
                 67888999999999********************5443133455665666666655.567899**********************99998888888899 PP

       MFS_4 113 arrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllp.raalreasaaaeaakaeqkslpllalllaYglaGfGYiit 210
                   r+r++a+      +G +++ l+v+ l + +l +   W+   +l+a+l ll + ++  +++++e     ++ k  q+  ++       g++  G ++ 
  CTQ27316.1 126 RSRGRLLAAYMMVYYVGTVLGQLMVSKLPT-DLMSVLPWVTGLALAAILPLLFTRIMGqAEEPHETVRIWPMLKLRQARHGVN------GCIISGIVLG 217
                 999*****9999999***999999987765.5566668**9999999999999888882223333333333333333333333......3444466666 PP

       MFS_4 211 atF..lvaiardgaggalleallWllvGlaa.ivgvlvwlrvakrsglrralaaallieavgvllsllspsplglivssvllGltflaitalvlqlare 306
                   +  +++  ++  g++     +W+ v ++a i+g +   r+a+r g   +l++++ +  +g l+ l  ++ +++++   +lG+  +   +++++ a e
  CTQ27316.1 218 SLYglMPLWLNH-QGVSDSGIGFWMAVMVSAgILGQWPVGRLADRYGRLLVLRVQVFVVILGCLAMLS-QAAMAPAL--FVLGASGFTLYPVAMAWACE 312
                 665536666666.55666788899999887559************************99999887655.66656666..67888888999999999999 PP

       MFS_4 307 lappatrrll.glmTasfgigQilGpllasllaeatgslalallvaaaal 355
                  + +++  ++  ++ +s+ ig +lGp l+++l++  ++  l +++a+++ 
  CTQ27316.1 313 KVEHHQLVAMnQALLMSYTIGSLLGPTLTAMLMQNFSDNLLFIMIASVSF 362
                 9999995555156779********************99999999998865 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5  14.4   6.7e-11   1.7e-07      44     187 ..      39     180 ..       6     187 .. 0.92
   2 ?   -0.3  11.4      0.15   3.7e+02      33     177 ..     225     360 ..     199     371 .. 0.60

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 6.7e-11
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                  + ++g++ s+++ G ++G l+ag++++r+G   s+  a+++f +g v  +++     ++  +  R+++G+g+ ++ v+v   +    + + Rg+l   
  CTQ27316.1  39 PTWQVGMVGSSYFTGNLAGTLLAGWVIKRLGFNRSYYLASLIFAVGCVGLGITV---GFWTWLSWRFIAGVGCAMIWVVVESALVCSGTSRSRGRLLAA 134
                 57899*************************************************...9**********************999999999********** PP

                 HHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHH CS
    Sugar_tr 143 yqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllil 187
                 y + + +G ++++ +  +l  +  +   w   l+l+++++ll+  +
  CTQ27316.1 135 YMMVYYVGTVLGQLMVSKLpTDLMSVLPWVTGLALAAILPLLFTRI 180
                 **************99999877777699999999999999887655 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.15
                 TT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS CS
    Sugar_tr  33 glsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiA 131
                  + ++++    s++ +g+ +++++  +i+G+  +g l+dr+GR  +l +  v++vi ++l ++++++     ++ + +++G +  + + ++  ++ E  
  CTQ27316.1 225 LWLNHQGV---SDSGIGFWMAVMVSAGILGQWPVGRLADRYGRLLVLRV-QVFVVILGCLAMLSQAA-----MAPALFVLGASGFTLYPVAMAWACEKV 314
                 45555543...4568999999*********************9776665.55555666666667633.....222233334333344555555555555 PP

                 -SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCC CS
    Sugar_tr 132 pkklRgalvslyqlaitfGilvaaifglgl.nktsnadgwrillglq 177
                   +   a+     +++t+G l++ ++++ l +++s+ +   i++++ 
  CTQ27316.1 315 EHHQLVAMNQALLMSYTIGSLLGPTLTAMLmQNFSD-NLLFIMIASV 360
                 555555555555566666666666666666444444.4555555544 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9  14.3   0.00049       1.2     227     369 ..       8     149 ..       1     153 [. 0.93
   2 !   17.6   8.9   5.3e-07    0.0014     216     384 ..     191     355 ..     150     356 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00049
  MFS_1_like 227 viifllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgi 325
                 v ++l  +l+l  + +++++ + l+L + + ++  +G++      +++   ++a +++++lG+ +   +a l++++  ++++i+  +w  l   ++ g+
  CTQ27316.1   8 VQMLLCGLLLLTLAIAVLNTLVPLWLAHENMPTWQVGMVGSSYFTGNLAGTLLAGWVIKRLGFNRSYYLASLIFAVGCVGLGITVGFWTWLSWRFIAGV 106
                 55677788999999************************************************************************************* PP

  MFS_1_like 326 sfgllwaaaveyvskiapksleatgqgllsglyfglGralGsli 369
                  ++++w+++ +      + + ++++ + + ++y+ +G+ lG+l+
  CTQ27316.1 107 GCAMIWVVVESALVCSGTSRSRGRLLAAYMMVYY-VGTVLGQLM 149
                 *********999999999***********99977.899999875 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 5.3e-07
  MFS_1_like 216 qvllnilknpeviifllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienaw 314
                   ++ +lk +++   +  ++i g++ g ++  + l+L++ g s + +G  +a+ v a i   +   +l +++G   +l +   ++++ +  +a++++a 
  CTQ27316.1 191 VRIWPMLKLRQARHGVNGCIISGIVLGSLYGLMPLWLNHQGVSDSGIGFWMAVMVSAGILGQWPVGRLADRYGRLLVLRVQ--VFVVILGCLAMLSQAA 287
                 45677777777777777899*****************************************************76666665..556668999******* PP

  MFS_1_like 315 lvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaiflFr 384
                 ++  + vL +  f l+ +a++  ++k+  ++l a  q+ll +  + +G+ lG  +  +l + +s   lF 
  CTQ27316.1 288 MAPALFVLGASGFTLYPVAMAWACEKVEHHQLVAMNQALLMS--YTIGSLLGPTLTAMLMQNFSDNLLFI 355
                 **9999*********************************965..6899****999999999999988885 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4  11.0   4.2e-06     0.011     224     337 ..       6     117 ..       2     122 .. 0.93
   2 ?    5.1   9.1    0.0028       7.1     204     333 ..     184     307 ..     118     312 .. 0.72
   3 ?   -1.2   0.4      0.22   5.6e+02     263     303 ..     325     365 ..     317     379 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.2e-06
       MFS_2 224 raflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllv 322
                 r+  +ll++ ll +la++vln+l+ + l +      ++ ++    ++++l+g++l+ ++ krlg  ++y+l++l+ +v+ v++ +      ++ l   +
  CTQ27316.1   6 RPVQMLLCGLLLLTLAIAVLNTLVPLWLAHENMPTWQVGMVGSSYFTGNLAGTLLAGWVIKRLGFNRSYYLASLIFAVGCVGLGIT--VGFWTWLSWRF 102
                 78999************************9988888999999999*********************************99999988..89999999999 PP

       MFS_2 323 iagfgvgvaallpws 337
                 iag+g ++++++++s
  CTQ27316.1 103 IAGVGCAMIWVVVES 117
                 999999999998876 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0028
       MFS_2 204 kteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivl 302
                 ++e  e ++++++lk     r+++  + ++++    lg l+gl+ + l++   ++s + ++++v++ +++lg   + +la r+g+  ++l  ++++++l
  CTQ27316.1 184 AEEPHETVRIWPMLK----LRQARHGVNGCIISGIVLGSLYGLMPLWLNHQGVSDSGIGFWMAVMVSAGILGQWPVGRLADRYGRL-LVLRVQVFVVIL 277
                 344455555555554....4788888889999999999999*******99988*******************************75.556666666666 PP

       MFS_2 303 lvlvlllqpsnlllflvllviagfgvgvaal 333
                 + l++l  ++ ++++l++l ++gf+++  a+
  CTQ27316.1 278 GCLAMLS-QAAMAPALFVLGASGFTLYPVAM 307
                 6666666.89999999999999999887665 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.22
       MFS_2 263 vfllvvtisallgiplwqplakrlgkkntyllgalltivll 303
                 ++l+  ti++llg  l + l + ++   ++++ a++ ++ l
  CTQ27316.1 325 ALLMSYTIGSLLGPTLTAMLMQNFSDNLLFIMIASVSFIYL 365
                 55666688888888888888888876655555444443333 PP

>> Nterm_IS4  Insertion element 4 transposase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00017      0.43      15      43 ..     114     142 ..     109     171 .. 0.87
   2 ?   -2.0   0.2       1.7   4.3e+03      29      47 ..     261     280 ..     255     288 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
   Nterm_IS4  15 lvdevlaetgtaevRkrkLPaevvvylvl 43 
                 +v+++l  +gt   R r+L a ++vy+v 
  CTQ27316.1 114 VVESALVCSGTSRSRGRLLAAYMMVYYVG 142
                 6899999*******************984 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.7
   Nterm_IS4  29 Rk.rkLPaevvvylvlalaL 47 
                 R  r+L  +v v++v+  +L
  CTQ27316.1 261 RYgRLLVLRVQVFVVILGCL 280
                 44489999999999986555 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  13.8   0.00065       1.7     224     366 ..      11     153 ..       2     211 .. 0.81
   2 ?    4.6   5.8    0.0034       8.6      81     188 ..     263     371 ..     241     379 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00065
       MFS_3 224 lvRaalFglsasavl.aLLPl.vardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalasslwvavlvlllgGaa 320
                 l+ + l    a+avl +L+Pl +a++++   +   G++ ++  +G ++g+ll   + +rl+ +r   la++ +A+ ++ l+++   w+ +    ++G +
  CTQ27316.1  11 LLCGLLLLTLAIAVLnTLVPLwLAHENMP--TWQVGMVGSSYFTGNLAGTLLAGWVIKRLGFNRSYYLASLIFAVGCVGLGITVGFWTWLSWRFIAGVG 107
                 55667777788888845889855666654..56789999999***********************************************9999999999 PP

       MFS_3 321 WitalstlnvavqlavPrWvvgRalavYltvlaGglaaGsllWGav 366
                   + +  +++a   +  +  +gR la Y++v + g  +G l+  ++
  CTQ27316.1 108 CAMIWVVVESALVCSGTSRSRGRLLAAYMMVYYVGTVLGQLMVSKL 153
                 99*******************************9999998876655 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0034
       MFS_3  81 vqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafa.vnals 178
                 + ll++ v v++++l  l +ls  ++    +++g       P   A   e v+++++ a      + + i    GP l+ +l+  +   l f  ++++s
  CTQ27316.1 263 GRLLVLRVQVFVVILGCLAMLSQAAMAPALFVLGASGFTLYPVAMAWACEKVEHHQLVAMNQALLMSYTIGSLLGPTLTAMLMQNFSDNLLFImIASVS 361
                 5677888888889999999998888877666666555555788899999*****99999999899*********************9999996257778 PP

       MFS_3 179 ylalivallr 188
                 ++ l++ l +
  CTQ27316.1 362 FIYLLTLLRK 371
                 8777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 2919.81
//
Query:       CTQ27317.1  [L=246]
Description: pyruvate formate lyase activating enzyme 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-32  112.5   0.1    3.6e-32  112.0   0.1    1.2  1  Radical_SAM     Radical SAM superfamily
    2.1e-18   66.9   0.1    2.9e-18   66.5   0.1    1.3  1  Fer4_12         4Fe-4S single cluster domain
    4.1e-06   26.9   0.3    7.5e-06   26.1   0.1    1.6  2  Fer4_14         4Fe-4S single cluster domain
  ------ inclusion threshold ------
       0.17   11.9   0.0       0.27   11.2   0.0    1.4  1  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.1     8e-36   3.6e-32       1     159 [.      24     178 ..      24     184 .. 0.95

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 8e-36
                  EEEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTT..SEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHG.HHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekg..vkevilgggepllypdfvellerlaklavpgiritvetngtlpd.eekle 95 
                  +++++gC +rC +C+++ t  ++  g++++vee+++ev  +++ ++  +++v+ +gge +l+++fv++++r++k+  +gi++++ tng++ + + +++
   CTQ27317.1  24 ITFFQGCLMRCLYCHNRDT-WDTHGGKEITVEELMKEVVTYRHFMNasGGGVTASGGEAILQAEFVRDWFRACKK--EGIHTCLDTNGFVRRyDPVID 118
                  6899**************9.99********************555558***************************..8************88****** PP

                  HHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  96 rllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendee 159
                  +lle   d v l+l+  +de +++ +  g ++ ++le  ++l++++i+ v++r+v++pG++d++
   CTQ27317.1 119 ELLEVT-DLVMLDLKQMNDE-IHQNL-VGVSNHRTLEFAQYLAKKNIN-VWIRYVVVPGWSDDD 178
                  ****77.*************.99999.99*******************.*************97 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.1   6.6e-22   2.9e-18       1     130 [.      16     142 ..      16     151 .. 0.82

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 6.6e-22
     Fer4_12   1 lnGeGvrlslfvsgCnlsCkgCfnketwsfksgkeft.kelleeiie..dlkkesiegltllGGEPllpenaeallelvkevkeekpekdiwlytgytl 96 
                 ++G+G+r++ f++gC ++C +C+n++tw+ ++gke+t +el++e+++  ++++ s  g+t +GGE +l  +ae + + ++ +k+e++  +++ ++g+  
  CTQ27317.1  16 VDGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEITvEELMKEVVTyrHFMNASGGGVTASGGEAIL--QAEFVRDWFRACKKEGI-HTCLDTNGFVR 111
                 69***********************************99****9986225779999************..*****************.69******976 PP

     Fer4_12  97 eelskkekeellkeid.vlvdGkfeesledeslrf 130
                         +ell+  d v++d k +++  + ++++
  CTQ27317.1 112 RYDP--VIDELLEVTDlVMLDLKQMND--EIHQNL 142
                 6654..467888887733555444443..444444 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   1.7e-09   7.5e-06       5      92 ..      27     111 ..      23     137 .. 0.76
   2 ?   -3.0   0.0       1.8   7.9e+03      64      85 ..     147     166 ..     142     169 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.7e-09
     Fer4_14   5 lsgCnlsCkgCdnketwkselgkpqt.eelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeypekkiwletngtle 92 
                 + gC + C  C n++tw+ + gk+ t eel++++++  +  + +  g++ +GGe +   + + + +  +  k+e+  ++  l tng + 
  CTQ27317.1  27 FQGCLMRCLYCHNRDTWDTHGGKEITvEELMKEVVTYRHFMNASGGGVTASGGEAI--LQAEFVRDWFRACKKEG--IHTCLDTNGFVR 111
                 59*****************9987655177777777666666666789*******99..66777778888888887..777788888766 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.8
     Fer4_14  64 kkellklvkrlkeeypekkiwl 85 
                 ++  l++ ++l ++   +++w+
  CTQ27317.1 147 NHRTLEFAQYLAKKN--INVWI 166
                 667778888888877..77775 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     6e-05      0.27      21      46 ..     105     130 ..      52     133 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6e-05
                     S-EEEEEE-GGGSSST--TTEEEEEE CS
  Prot_ATP_ID_OB  21 deevvvslagavpremLrpgDlVavd 46 
                     d++ +v++ ++v +e L ++DlV++d
      CTQ27317.1 105 DTNGFVRRYDPVIDELLEVTDLVMLD 130
                     7888*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1994.17
//
Query:       CTQ27318.1  [L=760]
Description: pyruvate formate lyase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.5e-207  689.7   0.1   6.4e-207  689.2   0.1    1.2  1  PFL-like     Pyruvate formate lyase-like
    1.9e-43  147.3   0.0    5.5e-43  145.8   0.0    1.9  1  Gly_radical  Glycine radical


Domain annotation for each model (and alignments):
>> PFL-like  Pyruvate formate lyase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  689.2   0.1  7.2e-211  6.4e-207       4     647 .]      23     614 ..      13     614 .. 0.97

  Alignments for each domain:
  == domain 1  score: 689.2 bits;  conditional E-value: 7.2e-211
                 HHHH...HHHCC.HT.TS.E.EE.........SHHHHHHHHHHHHCTTS.-HHHHHHHHHHHHHHHS----.-TT-SS---SSSSTTEEE--TTTTCHH CS
    PFL-like   4 rier...lkknytlyeakps.le.........lerarllteseketege.pvdirrakalakilsnlplyI.rddElIvGsqtkkprkraifPegsirm 87 
                 ++++   ++knyt+ye+++s l+         ++ +++  ++e++t++  ++d++ a++   i+s+ ++yI +  E+IvG+qt++p+krai+P+g+i+m
  CTQ27318.1  23 EVNVrdfIQKNYTPYEGDESfLAgateattklWDTVMEGVKQENRTHAPvDFDTALAST---ITSHDAGYIeKGLEKIVGLQTEAPLKRAIIPFGGIKM 118
                 45556679************999********9999999999999987777777777777...*********999************************* PP

                 HHTT.TTTCCCSSSSTEBEECHHHHHHHHHHHHHTTTSHHHHHHHHCHHTTHHHHTSTSEE--CHGGSSCEEEE--HHHHHTCHHHHHHHHHHHHHHHH CS
    PFL-like  88 lede.ldtlaereadgfeideeekkilreifpyWkgktvnegvfdayteetkaaresgiitvglpdasgrGhiipdyervlkyGldglieeikeklakl 185
                 +e + +++       + e+d+  kki++e     ++kt+n+gvfd+yt+++ ++r+sg++t glpda+grG+ii+dy+rv++yG+d l++++ +++++l
  CTQ27318.1 119 VEGScKAY-------NRELDPMLKKIFTE-----YRKTHNQGVFDVYTPDILRCRKSGVLT-GLPDAYGRGRIIGDYRRVALYGIDFLMKDKFAQFNSL 204
                 ****9999.......9999**********.....***************************.************************************* PP

                 CCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHTTTS--SSHHHHHHHHHHHHHHHHHHSSCCEEE-BSHHH CS
    PFL-like 186 dlddpeaiekaefykaviisleavieyaeryarlaeelaeqetdpkrkaeLleiaevcgrvpskpaetfqEAiQlvwfvhlalvkesngaamslgRldq 284
                 +                   le+ ++ +e ++rl+ee+aeq   ++++ +++e+a+ +g+++s pa+t+qEAiQ+++f++la+vk++ngaams+gR+++
  CTQ27318.1 205 Q-----------------AKLESGED-LEATIRLREEIAEQ---HRALGQIKEMAAKYGYDISGPATTAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSS 282
                 9.................33444544.799***********...******************************************************* PP

                 HTHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTTB-----HHHHCCCTTT--.--EEEEESB-TTSSB---HHHHHHHHHHHHH.--SSSEEEEEE-TTS CS
    PFL-like 285 ylypyyekDleeGrlteeeaqelidclwlklrevrklrseeyaelfagydp.fqnltvGGqnedGrdavnelsyliLealenl.klpePnlsvrvskkl 381
                 +l++y+e+Dl++G++te++aqe++d+l++klr+vr+lr++ey+elf+g dp ++++++GG++ dGr++v+++s+++L++l+ + ++pePn+++++s+kl
  CTQ27318.1 283 FLDIYIERDLQAGKITEQDAQEMVDHLVMKLRMVRFLRTPEYDELFSG-DPiWATESIGGMGVDGRTLVTKNSFRFLNTLYTMgPSPEPNITILWSEKL 380
                 ************************************************.888*********************************************** PP

                 -HHHHHHHHHHHHTTS--CEEEEHHHHHHHHHHTT--HHHHHTEEEETTTEEEECCCEES-SSEEEECHHHHHHHHTTTCETTTTCB-S-----GG.G- CS
    PFL-like 382 peeflkkaaevsrkGlgspayenddviipallnrgvsledArdyaiaGCvepqipGkeeqffaarinlakaLelalnnGrdektgkqvgpktgdvt.ef 479
                 p +f+k+aa+vs++ ++s++yendd+++p        ++d  dyaia+Cv+p+++Gk++qff+ar+nlak++++a+n+G+dek ++qvgpk ++++ ++
  CTQ27318.1 381 PLSFKKFAAKVSID-TSSLQYENDDLMRP------DFNND--DYAIACCVSPMVVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKgDV 470
                 **************.**************......88899..********************************************************* PP

                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHTSTTHHHHT--GGGT-SSEECEEEEEE-HHHHHHHHHHHHHHHTTSTSS-HHHHHH CS
    PFL-like 480 ksyeelmeafkkqleylvklyvealniihymhdkyapepllsalvddciergkdlgegGarynfsgpqgvGlanvaDSLsAIkklVFddkkvtleeLke 578
                 ++++e+m++++  +++l+k+yv alniihymhdky++e+ l+al+d+++ r++++g+            +Gl+++aDSLsAIk+    +k++++++ ++
  CTQ27318.1 471 LNFDEVMDRMDHFMDWLAKQYVTALNIIHYMHDKYSYEASLMALHDRDVIRTMACGI------------AGLSVAADSLSAIKY----AKVKPIRD-ED 552
                 *********************************************************............***************....********.** PP

                 HHHTTTTT-HHHHHHHHHS--TTSS-HHHHHHHHHHHHHHHHHHCTSB-TTSCEEEEEE--TTTHHHHH CS
    PFL-like 579 alaanFegeeelrqlllnaPkYGndddevDeiakevvetfaeevkkyknyrggkftaslltissnvpyg 647
                 +la +Fe+e       +++P++Gn+d +vD++a+++ve+f+++++k ++yr++ +t+s+lti+snv+yg
  CTQ27318.1 553 GLAIDFEIE-------GEYPQFGNNDPRVDDMAVDLVERFMKKIQKLHTYRNAIPTQSVLTITSNVVYG 614
                 *********.......****************************************************8 PP

>> Gly_radical  Glycine radical
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.8   0.0   6.2e-47   5.5e-43       1     106 []     630     741 ..     630     741 .. 0.98

  Alignments for each domain:
  == domain 1  score: 145.8 bits;  conditional E-value: 6.2e-47
                  TTSTTSHHCCHHHCHCHHCCCCCCTSECGCETTEETTECCCCHHHHHHHCC-CCCCCCHHCCCCCC......T-SECEEEEETCCCHCCCCCSCGGGC CS
  Gly_radical   1 lapganpmegrdkegplaslnSvakldyevaldgislnlkavpdalgkeeeerienlatlldgyfe......ggfhlnvnvvsretLldAqehpekyp 92 
                  + pganpm+grd++g++asl+Svakl++++a+dgis+++++vp+algk++e r +nla l+dgyf+      gg+hlnvnv++re+LldA+e+pekyp
   CTQ27318.1 630 FGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHheasieGGQHLNVNVMNREMLLDAMENPEKYP 727
                  679**************************************************************6689***************************** PP

                  CEEEESSSSEEECC CS
  Gly_radical  93 qltiRVsGYavnFv 106
                  qltiRVsGYav+F+
   CTQ27318.1 728 QLTIRVSGYAVRFN 741
                  *************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 4984.14
//
Query:       CTQ27319.1  [L=285]
Description: formate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-76  254.5  29.4    9.4e-76  254.3  29.4    1.0  1  Form_Nir_trans  Formate/nitrite transporter
  ------ inclusion threshold ------
       0.57   10.6  12.2       0.21   12.0   0.5    3.3  3  PEMT            Phospholipid methyltransferase
          5    6.8  18.3       0.32   10.6   3.1    3.6  4  Keratin_assoc   Keratinocyte-associated protein 2


Domain annotation for each model (and alignments):
>> Form_Nir_trans  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.3  29.4   1.6e-79   9.4e-76       2     236 .]      15     276 ..      14     276 .. 0.93

  Alignments for each domain:
  == domain 1  score: 254.3 bits;  conditional E-value: 1.6e-79
                     HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCTTCHHHHHHHHHCCCHHHHHHHHHT---CCCCCCHHHHHHCTTSSSCH CS
  Form_Nir_trans   2 ivekvvaagvkkaklsldklfllgilAGafigfgvllalvvaaalaesnpglakllgglvFpvGlilvvllgaeLfTgntllltlavlkkkvslk 96 
                     +++ + +agv+ka+++ +k+f l+i+AG+fi++++++++++++++a+ + g+akl+gg++F++Glil v++ga+LfT+ +l +++a ++++++++
      CTQ27319.1  15 MAKVAEEAGVYKATKHPMKTFYLAITAGVFISIAFVFYITATTGTAAMPYGIAKLIGGICFSLGLILCVICGADLFTSTVL-IVVAKASGRITWG 108
                     56778899************************************9888*********************************.9************ PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHHHCTGG......HHHHHHHHHCCCSS-HHHHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHH CS
  Form_Nir_trans  97 kllknwlvvllgNliGsllvalllvvlsgll......aekllsiaeaklslsfleaflrGilCNwlVclavwlalaakdvigkilaiflpifafv 185
                     +l+knwl v++gNl+G+ll++ll++ +++++      + ++l++a++k++++f+ea+  Gil+N++Vclavw++++ +++++k ++++lp+++fv
      CTQ27319.1 109 QLAKNWLNVYFGNLVGALLFVLLMWLSGEYMtanggwGLNVLQTADHKMHHTFVEAVSLGILANLMVCLAVWMSYSGRSLMDKAMIMVLPVAMFV 203
                     ********************96666666664566667********************************************************** PP

                     HCT---HHHHHHHHHHHHHH......................SHHHHHHHCHHHHHHHHHHHHHCCHHHHHHH CS
  Form_Nir_trans 186 asgfeHsvanmfliplglll......................tvadfilknlipvtlGNivGGallvgllyly 236
                     asgfeHs+anmf+ip+g+++                      tv++fi+ nlipvt+GNi+GG+llvgl+y++
      CTQ27319.1 204 ASGFEHSIANMFMIPMGIVIrnfaspefwtaigstpesfshlTVMNFITDNLIPVTIGNIIGGGLLVGLTYWV 276
                     ******************66666677777777888888888899***************************96 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   3.6e-05      0.21      44      84 ..      21      61 ..      13      71 .. 0.81
   2 ?   -1.8   0.0      0.68     4e+03      64      73 ..      77      86 ..      68     102 .. 0.45
   3 ?    3.7   2.7     0.013        78       4      74 ..     122     194 ..     119     214 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.6e-05
        PEMT 44 tsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvll 84
                ++G+Y+ +++P+ ++ +++  G+ +   ++  +++++  ++
  CTQ27319.1 21 EAGVYKATKHPMKTFYLAITAGVFISIAFVFYITATTGTAA 61
                68***********************9999987666655444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.68
        PEMT 64 lGlaLitgsa 73
                lGl L +   
  CTQ27319.1 77 LGLILCVICG 86
                4444433333 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.013
        PEMT   4 ilGlllialglllvlssiealgefgtfygdfFlelmd.klvtsGiYrylnnPeyvgst.lgflGlaLitgsaa 74 
                 ++G+ll++l ++l+ + + a g +g  + +   ++m+ + v++    +l n +  + + +++ G +L+ + + 
  CTQ27319.1 122 LVGALLFVLLMWLSGEYMTANGGWGLNVLQTADHKMHhTFVEAVSLGILANLMVCLAVwMSYSGRSLMDKAMI 194
                 57*********************99998887666666655666666666666665544245556666655555 PP

>> Keratin_assoc  Keratinocyte-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   2.8    0.0083        50      34      78 ..      37      78 ..      25      87 .. 0.74
   2 ?   10.6   3.1   5.4e-05      0.32       5      56 ..      87     138 ..      83     187 .. 0.88
   3 ?   -0.8   0.2      0.18   1.1e+03      68      85 ..     168     185 ..     161     219 .. 0.67
   4 ?   -2.4   0.1      0.56   3.4e+03      18      40 ..     245     267 ..     232     277 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0083
  Keratin_assoc 34 ltilgGflgsllFvllLTavgnletllfgkgfqakllpEvllclv 78
                   l i++G++ s+ Fv+ +Ta     ++ +g    akl+  + ++l 
     CTQ27319.1 37 LAITAGVFISIAFVFYITATTGTAAMPYG---IAKLIGGICFSLG 78
                   67999999999999999998877666664...3666666666654 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 5.4e-05
  Keratin_assoc   5 tslllssllavlvfalmqlyksklasselltilgGflgsllFvllLTavgnl 56 
                    + l+ s++l+v+  a  ++   +la + l++ +g ++g+llFvll+   g +
     CTQ27319.1  87 ADLFTSTVLIVVAKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEY 138
                    567899**************************************98766655 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.18
  Keratin_assoc  68 kllpEvllclvlaliasg 85 
                     +l+ +++cl++ +  sg
     CTQ27319.1 168 GILANLMVCLAVWMSYSG 185
                    556666666666665554 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.56
  Keratin_assoc  18 falmqlyksklasselltilgGf 40 
                    +++m+++ ++l    +  i+gG 
     CTQ27319.1 245 LTVMNFITDNLIPVTIGNIIGGG 267
                    67788888888877777666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2196.32
//
Query:       CTQ27320.1  [L=586]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-82  276.0   0.0    8.6e-82  275.0   0.0    1.5  2  YcaO      YcaO cyclodehydratase, ATP-ad Mg2+-binding
    2.9e-67  225.9   0.3      4e-67  225.4   0.3    1.2  1  YcaO_C    YcaO cyclodehydratase C-terminal domain


Domain annotation for each model (and alignments):
>> YcaO  YcaO cyclodehydratase, ATP-ad Mg2+-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.0   0.0   9.6e-86   8.6e-82       1     323 []      59     391 ..      59     391 .. 0.91
   2 ?   -3.4   0.0      0.52   4.6e+03     153     173 ..     555     578 ..     551     584 .. 0.71

  Alignments for each domain:
  == domain 1  score: 275.0 bits;  conditional E-value: 9.6e-86
        YcaO   1 nGkGateeaArasalgEalErysaegffr................gdekrvr.asyrelegegaldpeelglyse..eekdaadfvlepfdpdrpidwv 80 
                 nGkGat++aA+asalgE++Er+s+++ff+                ++ek++  +  +e+ +eg+ld +   +y++  + +++  ++l++ +++r ++ +
  CTQ27320.1  59 NGKGATKKAALASALGEYFERLSTNYFFAdfwlgdtiangpfvhyPNEKWFPlTEDDEV-PEGLLDARLRAFYDPddQLTASMLVDLQSGNDERGVCGL 156
                 8**********************************************************.*************9998888899999************* PP

        YcaO  81 pgwsltdgeevlvPanlvylyeppegearlfletsnGlAaGntleeAilhGllEliERdafalawyerlplprid...lasdpeirellerlreagiev 176
                 p+++++dge+v++P+n+v +           l++snG++aGnt++eA+++Gl+E++ER+ +++++ e ++lp+i+   +a++p + e +++l+++g+ +
  CTQ27320.1 157 PFTRQSDGETVYIPMNIVGN-----------LYVSNGMSAGNTRNEARVQGLSEVFERHIKNRIIAESISLPEIPaevMARYPGVVESIAKLEAEGFPI 244
                 ********************...........********************************************8877799***************** PP

        YcaO 177 rlldatldlgipvvaavlvdpk...lllvagaGahldpevAlerAltElaqsrltlisgaredpdfd.eeladvatleradreallwlpeaaakrldfl 271
                  ++d +l++++pv+++vl++p    +  +a++Gah+d+ vAler++tEl+q+r   +     +p+fd ee+a++a+le     ++++ +++   ++d++
  CTQ27320.1 245 FAYDGSLGGKYPVICVVLFNPAngtC--FASFGAHPDFGVALERTVTELLQGRSLKDLDVFTPPTFDdEEVAEHANLE-----THFI-DSSGLISWDMF 335
                 ********************664323..36***********************6666666799999756666666665.....5555.44444455554 PP

        YcaO 272 l......faewassgdleedletllerlkaagldvlvvdltrpdlglpvvkvivPgle 323
                        f++w +sg++ee+++tl++++ka++ +v+++d++  +lg++++++ivPg++
  CTQ27320.1 336 KqdadypFVDWSFSGTTEEEFATLMAIFKAEDKEVYIADYE--HLGVYACRIIVPGMS 391
                 455555679********************************..9************96 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.52
        YcaO 153 rid..lasdpeirellerlre.ag 173
                 ++d  l+++p+ ++ll+++++ ++
  CTQ27320.1 555 AVDsdLQAFPAHQSLLKAYEKlQR 578
                 455447789999999999998444 PP

>> YcaO_C  YcaO cyclodehydratase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.4   0.3   4.4e-71     4e-67       1     171 [.     407     581 ..     407     582 .. 0.99

  Alignments for each domain:
  == domain 1  score: 225.4 bits;  conditional E-value: 4.4e-71
      YcaO_C   1 alefRedllnLh..eldeeqleellerLeeeelddytrvaeLiGiefdentvWgqLrigELklliaLalgdleeAlelvewtlqfnds..taeralfYr 95 
                 ++++R+++l+L+  e+d+e++ +l+e++++e+ldd+trv+eL+G++++++++W++Lr+gELk+++aLa+gdle+Al ++ewt++fn+s  +aera++Yr
  CTQ27320.1 407 GAHLRDTILSLPgsEWDKEDYLALIEQMDDEGLDDFTRVRELLGLATGKDNGWYTLRVGELKAMLALAGGDLEQALIWTEWTMEFNASvfSAERANYYR 505
                 789************************************************************************************************ PP

      YcaO_C  96 aLkavLelaldeeleledyeenfermyGeetveavlasvegevrfygLtatdekLegldaHqkllesYkkLqaaka 171
                 +L+++L l+++ee+++ +y ++f rmyG+++vea++a+++ge++fygL+a d++L++++aHq+ll++Y+kLq+aka
  CTQ27320.1 506 CLQTLLLLSQEEERQPLQYLNAFIRMYGADAVEAASAALSGEAPFYGLQAVDSDLQAFPAHQSLLKAYEKLQRAKA 581
                 ***************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4265.20
//
Query:       CTQ27321.1  [L=230]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-15   57.0   0.0    1.9e-15   56.5   0.0    1.2  1  DUF421         Protein of unknown function (DUF421)
       0.01   15.9   0.7      0.017   15.2   0.7    1.4  1  Spt4           Spt4/RpoE2 zinc finger
  ------ inclusion threshold ------
       0.12   11.4   1.3       0.18   10.8   1.3    1.2  1  XK-related     XK-related protein
       0.55   10.3   5.9       0.74    9.8   0.4    2.3  2  Zn_Tnp_IS1595  Transposase zinc-ribbon domain


Domain annotation for each model (and alignments):
>> DUF421  Protein of unknown function (DUF421)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   4.2e-19   1.9e-15       2      66 ..     104     168 ..     103     192 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 4.2e-19
      DUF421   2 lidgkpvvlienGkldeknlkklrltvddLleqLRqqgifslsdVkyailEtnGqlsvllkeekk 66 
                 l++gkp+v++e+G+l  ++l+ +++t  ++ ++LR +++++l +V+ ailEtnGq+sv+ +++++
  CTQ27321.1 104 LLEGKPIVVVEEGQLAWEKLHAENMTEFEFFMELRVNSVEQLGQVRLAILETNGQISVFYYPDEE 168
                 799********************************************************999965 PP

>> Spt4  Spt4/RpoE2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.7   3.8e-06     0.017       3      25 ..     194     216 ..     192     228 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.8e-06
        Spt4   3 ACllCklvktedqFeeegCpnCe 25 
                 AC++C++v+ +++ e+++Cp C 
  CTQ27321.1 194 ACVRCSIVMAMQAGEKRICPRCA 216
                 9*********************3 PP

>> XK-related  XK-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.3   4.1e-05      0.18     254     328 ..      20      91 ..       6      97 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.1e-05
  XK-related 254 eeilfrlvvgiiyiFcwfnvkegrtryrmlvyyllmllenillvllwyylkkdslesdvlalvllvvlvsfllGi 328
                  e+ +r ++ ++++F+++++  +r  ++m+++ +l++l+   + +   ++++d       +lv++v+l++   Gi
  CTQ27321.1  20 AEVALRSLYTFVLVFIFLKITGRRGVRQMSLFEVLIILTLGSAAGDV-AFYDDV--PLLPVLVVFVTLALLYRGI 91 
                 68899*******************************99988888876.444443..2333333333555555555 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.6      0.02        89      23      44 ..     179     199 ..     178     201 .. 0.80
   2 ?    9.8   0.4   0.00016      0.74      16      37 ..     207     228 ..     199     230 .] 0.78

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.02
  Zn_Tnp_IS1595  23 hCgsrkayriktrglfqCkeCr 44 
                    hC  +++++i + g + C +C+
     CTQ27321.1 179 HCT-TRYTTIPQEGIYACVRCS 199
                    455.478888889********6 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00016
  Zn_Tnp_IS1595  16 pngfvCPhCgsrkayriktrgl 37 
                    +++++CP+C++++  + +++++
     CTQ27321.1 207 GEKRICPRCANAEWSKASRAKR 228
                    56799*******8777776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1672.66
//
Query:       CTQ27322.1  [L=88]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 710.39
//
Query:       CTQ27323.1  [L=362]
Description: 3-phosphoserine/phosphohydroxythreonine aminotransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-70  236.6   0.0    4.8e-70  236.4   0.0    1.0  1  Aminotran_5  Aminotransferase class-V
  ------ inclusion threshold ------
      0.028   14.4   0.0       0.11   12.6   0.0    1.9  2  G-gamma      GGL domain


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.4   0.0   5.3e-74   4.8e-70       1     371 []       4     350 ..       4     350 .. 0.99

  Alignments for each domain:
  == domain 1  score: 236.4 bits;  conditional E-value: 5.3e-74
                  EEEBTTTS----HHHHHHHHHHHHCTCCSSSS..SSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHH.HHHHHHHHCCCC-TTTSEEEEET CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyytdynanvhr..svhhlgkeatkaveearekvaelinaeseeeiiftsGtte.ainlvalslarslkpgdeivvte 95 
                  +y++s++++++p+eVl+ +q+++ d+++ +++  +++h+gke+++  eea++++++l+n++s+++++f++G+++ +++ ++l++   l +++ +++++
   CTQ27323.1   4 VYNFSSGPAMLPAEVLKLAQQELCDWHGLGTSvmEISHRGKEFIQVAEEAEQDFRALLNIPSNYKVLFCHGGGRgQFAGIPLNI---LGDKKVADYVD 98 
                  7*******************************99**************************************************...*********** PP

                  TSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGH.HHH--TTEEEEEEESBETTTTE.B--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHT CS
  Aminotran_5  96 aehhanlvpwqelakrtgakvkvipldeegeldldel.ekllnektklvaithvsnvtGt.iqpveeigklakkkgalvlvDaaqavghipidvkklg 191
                  a+++a+  + +e++k ++ +v  ++++ +g+  ++++ e++l++ +++++++ ++++ G+ i++++++g      +++v +D ++++++++idv+++g
   CTQ27323.1  99 AGYWAAS-AVKEAKKYCTPNVIDAKITVDGKRAVKPMsEWQLTPGAAYLHYCPNETIDGIaIDETPNFG-----DDVIVTADFSSTILSREIDVNRFG 190
                  *******.****************************999******************************.....9*********************** PP

                  ESEEEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEET.TEEEEHCTTGGGS.SS--HHHHHHHHHHHHHH.HCHHHHHHHHHHHHHHHHH CS
  Aminotran_5 192 vDflafsghKllgPtGiGvlyvrkellekleplllggemveevsl.eettfaeapskfeaGTpnvagiiglgaaleyl.eeigleaiekhekelaeyl 287
                  v  ++++++K++gP+G+++++vr++ll+k+         v+++s+ ++t+++e++s+f+  Tp++++++  g+++++l +++g++a++k ++++ae l
   CTQ27323.1 191 V--IYAGAQKNIGPAGLTLVIVREDLLGKA--------SVACPSIlDYTVLSENDSMFN--TPPTFAWYLAGLVFKWLkQQGGVAAMDKINQQKAELL 276
                  *..***************************........89*******************..*****************99****************** PP

                  HHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHT.TEEEEE..E-TTTHHHHHHTT.S-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 288 lerlkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdee.gIavrs..GhhcaqplmkrlalegtvRaSlyiynteeevdrl 371
                  +  +++++ +r+   d+a++++s ++++f+  +++  + +L+e+ +  +++  Gh+++          g++RaS+y+++  + v++l
   CTQ27323.1 277 YGVIDNSGFYRN---DVAQANRSRMNVPFQLADSALDKLFLEESfAAGLHAlkGHRVV----------GGMRASIYNAMPLDGVKAL 350
                  ************...99***************************999999999*****..........**************99987 PP

>> G-gamma  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.43   3.9e+03      28      42 ..     106     121 ..     103     130 .. 0.79
   2 ?   12.6   0.0   1.2e-05      0.11      24      47 ..     217     241 ..     209     258 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.43
     G-gamma  28 AceelidYve.stkDp 42 
                 A++e  +Y++ +  D 
  CTQ27323.1 106 AVKEAKKYCTpNVIDA 121
                 889999***9877665 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.2e-05
     G-gamma  24 kvSkAceelidYve.stkDpllpev 47 
                 k+S Ac +++dY+  s++D + +++
  CTQ27323.1 217 KASVACPSILDYTVlSENDSMFNTP 241
                 9******************987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2714.27
//
Query:       CTQ27324.1  [L=427]
Description: 5-enolpyruvylshikimate-3-phosphate synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.5e-156  520.6   0.0   2.8e-156  520.4   0.0    1.0  1  EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvin


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  520.4   0.0  1.6e-160  2.8e-156       2     417 .]       7     420 ..       6     420 .. 0.96

  Alignments for each domain:
  == domain 1  score: 520.4 bits;  conditional E-value: 1.6e-160
                    ECSS--EEEEE--B-HHHHHHHHHHHGGGBSSEEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-HHHHTT-GGGGGGHHH CS
  EPSP_synthase   2 ekgkrlegevkvpGsksisnralllAaLaegestitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeapeelvldlgnsgtalrl 97 
                    ++++r+eg+v++pGsks+snralllAaLa+g++ +tnlLds+Dvr+ml+al +Lg+  + l+++ +++ v g+gg + ++++l l+lgn+gta+r+
     CTQ27324.1   7 QPIARVEGTVNLPGSKSVSNRALLLAALARGTTVLTNLLDSDDVRHMLNALSALGV-QYTLSADRTRCEVTGNGGPLRSAAALELFLGNAGTAMRP 101
                    7899***************************************************5.778889*****************99************** PP

                    HHHHHSEESSEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEET.SS-BEEEEETSSTTHHHHHHHHHHHTTSBS.EEEEES.-TT CS
  EPSP_synthase  98 LtallalasgevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkg.lklkgveikaevsSqqvtsllllaallaeg.ttelee.las 190
                    L+a+l+l s+ +vLtG++++++RPi +l+daLrq Ga+i+++e+en++pl+ +g +++++ve++++vsSq++t+ll+ a+l  ++  + +++ l+s
     CTQ27324.1 102 LAAALCLGSNDIVLTGEPRMKERPIGHLVDALRQGGAQIDYLEQENYPPLRLRGgFQGGNVEVDGSVSSQFLTALLMTAPLAPQDtVIVIKGdLVS 197
                    ********************************************************************************888885666677**** PP

                    HHHHHHHHHHHHHTT-EEEETTSSEEEEEE--SS..B--EEEE--B-HHHHHHHHHHHHHTT-EEEEES--GGGGHHH..HHHHHHHHTTEEEEEE CS
  EPSP_synthase 191 epsiddtlkmlkkfgikietsgteesitvkGkek..lpgteyvvegDassAayflvaAaitggevtvenvginslqGdiealdeilekmgaeitqe 284
                    +p+id+tl+++k+fg+++++ ++++++ v+Gk++  +pg +y vegDassA+yfl+a+ai+gg+v+v+++g+ns+qGdi+++d +lekmga++t++
     CTQ27324.1 198 KPYIDITLHLMKTFGVEVDN-QSYQRFVVRGKQQyqSPG-DYLVEGDASSASYFLAAGAIKGGTVKVTGIGRNSVQGDIRFAD-VLEKMGATVTWG 290
                    ********************.77777*********7777.*******************************************.************ PP

                    STSEEEEEETTS--BEEEEEBGSTTSBHGGGHHHHHHHHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEEEEEEEE.EB-EEEE-TTS CS
  EPSP_synthase 285 edasivvgpsglklkdvdietlpdeaptlavlaafaegttviegiaelrvketdrlaamateLrklGaeveeeedgliiipaekqlkgaevesydD 380
                    +d+ i+ ++ +lk +d+d++++pd+a+t+a++a+fa+gtt++++i+++rvketdrl+amateLrk+Gaevee+ed+++i+p++k lk ae+ +y+D
     CTQ27324.1 291 DDF-IACTHGELKAVDMDMNHIPDAAMTIATAALFAQGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGEDYIRITPPAK-LKYAEIGTYND 384
                    *55.5555559**********************************************************************997.*********** PP

                    TTTTHHHHHHHHHSBSEEEEETTHHHHHHSSSHHHHH CS
  EPSP_synthase 381 hRiamalalaglvaegeveiddiectdksfpefeekL 417
                    hR+am+++l++ +++ +v+i d++ct+k+fp+++e+L
     CTQ27324.1 385 HRMAMCFSLVA-LSDTPVTILDPKCTAKTFPDYFEQL 420
                    ***********.6777******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3103.33
//
Query:       CTQ27325.1  [L=227]
Description: cytidylate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-83  277.9   0.0    5.9e-83  277.8   0.0    1.0  1  Cytidylate_kin   Cytidylate kinase
    9.2e-09   35.7   0.4    2.6e-08   34.2   0.4    1.7  1  Cytidylate_kin2  Cytidylate kinase-like family
     0.0003   21.2   1.7      0.025   15.0   1.7    2.6  1  AAA_17           AAA domain
    0.00098   19.7   0.0     0.0034   17.9   0.0    2.0  1  AAA_18           AAA domain
     0.0039   17.3   1.0       0.29   11.2   0.1    3.0  3  SKI              Shikimate kinase
  ------ inclusion threshold ------
       0.01   16.0   0.2      0.046   13.9   0.2    2.2  1  AAA_33           AAA domain
      0.012   14.9   0.2      0.068   12.5   0.0    1.9  2  ATP_bind_2       P-loop ATPase protein family
      0.018   15.1   0.0      0.038   14.1   0.0    1.5  1  ADK              Adenylate kinase
       0.02   14.7   0.1      0.083   12.7   0.0    1.9  2  dNK              Deoxynucleoside kinase
      0.024   15.2   0.0      0.045   14.3   0.0    1.5  1  ABC_tran         ABC transporter
      0.046   13.7   0.1      0.093   12.7   0.1    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro


Domain annotation for each model (and alignments):
>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.8   0.0   3.6e-86   5.9e-83       1     210 [.       8     221 ..       8     222 .. 0.99

  Alignments for each domain:
  == domain 1  score: 277.8 bits;  conditional E-value: 3.6e-86
                     EEEE-STTSSHHHHHHHHHHHHT-EEEEHHHHHHHHHHHHHHTT--TT-HHHHHHHHHT--EEEEEE....EEEETTEE-TTGGGSHHHHHHHHH CS
  Cytidylate_kin   1 iaiDGPagsGKssvaralaeklglkyldtgalYRalalaalrrkvdlldeaalvelakevelsfeae....kvllngedveeelrsdevekavSa 91 
                     i+iDGP g+GK+++++a+ae lg+++ld+ga+YR+lalaal+++vd+ +e+alv la++++++f ++    +v+l+gedv++e+r++ev++a+S+
      CTQ27325.1   8 ITIDGPGGAGKGTLCKAMAEALGWHLLDSGAIYRVLALAALHHHVDVESEEALVPLAAHLDVRFISTdgnlEVVLEGEDVSSEIRTQEVANAASK 102
                     89***************************************************************99999************************* PP

                     HTTSHHHHHHHHHHHHTT-BSSBEEEEESSIIIIISTT-SEEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHCTSSS-S---T CS
  Cytidylate_kin  92 vaaipavRailvkklrelvkkarvvveGRDigtvvfpdaelKifldAsveeRakRRlkqlkakgtsvsleellaeikeRDklDkerevgpLklae 186
                     vaa+p+vR++l++++r++ +  +++++GRD+gtvvfpda++KifldAs++eRa+RR++ql++kg++v++e+ll eikeRD++D++r+v+pL++a+
      CTQ27325.1 103 VAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASADERAHRRMRQLQEKGFDVNFERLLSEIKERDDRDRNRAVAPLVPAA 197
                     *********************************************************************************************** PP

                     T-EEEETTTS-HHHHHHHHHHHHH CS
  Cytidylate_kin 187 daliidtskltieevvekilelik 210
                     dal++d+++l ie+v+ek+l++++
      CTQ27325.1 198 DALVLDSTELNIEQVIEKALQYAR 221
                     ********************9986 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.4   1.6e-11   2.6e-08       1     154 [.       7     186 ..       7     190 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.6e-11
  Cytidylate_kin2   1 iITIsreyGsgGetigeaLAekLglpfydreiieevakelglseeeveevdersrlssflskllaarvagdtl..................... 73 
                      +ITI++  G+g+ t+++a Ae Lg++++d   i +v   + l+ +   e +e+ +  +++  +   +  g+                       
       CTQ27325.1   7 VITIDGPGGAGKGTLCKAMAEALGWHLLDSGAIYRVLALAALHHHVDVESEEALVPLAAHLDVRFISTDGNLEvvlegedvsseirtqevanaa 100
                      8********************************************9999999666555555555555444444889999998777777766544 PP

  Cytidylate_kin2  74 ....deklddelfeaqervirelaaeesvVivGR.gadliLkdrpnvlrvfltapledrvkrvaeregl.....seeearekiketDkrra 154
                           ++   +++ea  r  r+  +  + +  GR  + +++ d p  +++fl+a+ ++r++r +++ +      + e + ++ike+D+r +
       CTQ27325.1 101 skvaAFP---RVREALLRRQRAFRELPGLIADGRdMGTVVFPDAP--VKIFLDASADERAHRRMRQLQEkgfdvNFERLLSEIKERDDRDR 186
                      3222222...2222222222222356799*****559999***99..*************9977665443566677899999999998866 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.7   1.6e-05     0.025       2      32 ..      12      42 ..      12     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-05
                E-TTSSHHHHHHHHHHHHTEEEEEHHHHHHH CS
      AAA_17  2 GgPGsGKgtqceklvekygfthlsaGdllre 32
                G+ G+GKgt+c+ ++e +g + l  G + r 
  CTQ27325.1 12 GPGGAGKGTLCKAMAEALGWHLLDSGAIYRV 42
                788********************99998774 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.1e-06    0.0034       1     113 [.       8     161 ..       8     191 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.1e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf..................................gvnlrdvakenglllevdpealdeskrldedkldklldale 65 
                 I + G+ G+GK tl+k+ ++ lg                                   +  +r++ ++++l+   + e  d s +++++ ++++ +++ 
  CTQ27325.1   8 ITIDGPGGAGKGTLCKAMAEALGWhlldsgaiyrvlalaalhhhvdveseealvplaaHLDVRFISTDGNLEVVLEGE--DVSSEIRTQEVANAASKVA 104
                 7899*****************988899999999999999988888888888888888888888888888888888888..8888888888888888888 PP

      AAA_18  66 enssaleegknlvidghlaeleseaakdikk.............vvLtaspeelleRlekR 113
                 + ++        ++  ++a  e + ++  ++             ++L+as +e++ R  ++
  CTQ27325.1 105 AFPR----VREALLRRQRAFRELPGLIADGRdmgtvvfpdapvkIFLDASADERAHRRMRQ 161
                 8877....33334444444444444443333566666666666699999999999886555 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   0.00018      0.29       2      23 ..      15      36 ..      14      47 .. 0.93
   2 ?    0.2   0.0      0.46   7.5e+02      12      30 ..      63      81 ..      61      96 .. 0.82
   3 ?    2.7   0.1     0.074   1.2e+02      89     155 ..     145     218 ..     131     221 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
                TSSHHHHHHHHHHHHTSEEEEH CS
         SKI  2 GaGKstvGkllAkklglefiDl 23
                GaGK t+ k++A++lg++++D+
  CTQ27325.1 15 GAGKGTLCKAMAEALGWHLLDS 36
                9*******************97 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.46
                HHHHHTSEEEEHHHHHHHH CS
         SKI 12 lAkklglefiDlDeliekr 30
                lA +l+++fi +D  +e +
  CTQ27325.1 63 LAAHLDVRFISTDGNLEVV 81
                899**********988765 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.074
                 EEEE--HHHHHHHHHHTTS.SGGGCSCHH......HHHHHHHHHHHHHHHCCSSCEEEECTSSHHHHHHHHHHH CS
         SKI  89 iyLdvsleellerlkadke.RPllqeksk......eeelleelaereplyeeaadvvvdeseeskeevaeeile 155
                 i+Ld+s +e ++r +++ + + +  + ++      e++ ++  ++  pl   a++ v d++e + e+v+e+ l+
  CTQ27325.1 145 IFLDASADERAHRRMRQLQeKGFDVNFERllseikERDDRDRNRAVAPLVPAADALVLDSTELNIEQVIEKALQ 218
                 66666666655554433332333333333333222223333333456777888999999999999999998887 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   2.8e-05     0.046       1      33 [.       7      62 ..       7     215 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.8e-05
      AAA_33  1 lvllvGlpGsGKstlaerllkklgavllssdt.......................l 33
                ++ + G+ G+GK tl + ++++lg+ ll+s +                        
  CTQ27325.1  7 VITIDGPGGAGKGTLCKAMAEALGWHLLDSGAiyrvlalaalhhhvdveseealvP 62
                56677*************************99444444444444444444444440 PP

>> ATP_bind_2  P-loop ATPase protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.2e-05     0.068       2      70 ..       6      79 ..       5     121 .. 0.75
   2 ?    0.3   0.1      0.22   3.6e+02     121     149 ..     186     215 ..     133     224 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.2e-05
                EEEEEEESTTSSHHHHHHHH.HHHTXEEEBSXXGGGHHHHHH....HHH...TTTXXEEEEESTTTSXSSHHHH CS
  ATP_bind_2  2 elvivsGlsGaGksvalral.edlGyyvvdnlPlsllpklvd....llkeansreskvavvldvrnreesaell 70
                 ++ + G  GaGk++  +a+ e lG++  d   +  +  l+     +  e+++  + +a  ldvr ++  ++l 
  CTQ27325.1  6 PVITIDGPGGAGKGTLCKAMaEALGWHLLDSGAIYRVLALAAlhhhVDVESEEALVPLAAHLDVRFISTDGNLE 79
                58999*************986889******8655444444430001334667888889999***9988766654 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.22
                 HHHHTHHHHHTXS.EEEECTTXXHHHHHHH CS
  ATP_bind_2 121 erelleplrarad.lildtselsvrelrek 149
                  ++ ++pl   ad l+ld +el+++++ ek
  CTQ27325.1 186 RNRAVAPLVPAADaLVLDSTELNIEQVIEK 215
                 235677877776647889999988887665 PP

>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.4e-05     0.038       3      32 ..      12      41 ..      10      51 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
                ESTTSSHHHHHHHHHHHHTSEEEEHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  3 GaPgaGKGtqaeklvkkyglahlstGdllR 32
                G+ gaGKGt ++ +++ +g+  l +G + R
  CTQ27325.1 12 GPGGAGKGTLCKAMAEALGWHLLDSGAIYR 41
                899***********************9988 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.1e-05     0.083       1      27 [.       8      34 ..       8      40 .. 0.93
   2 ?   -0.6   0.0      0.63     1e+03     124     143 ..     142     161 ..     131     216 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.1e-05
                EEEEESTTSSHHHHHHHHHCCSTCEEE CS
         dNK  1 ivveGnIgaGKstlvklLskklgvkvf 27
                i+++G+ gaGK tl k ++++lg++ +
  CTQ27325.1  8 ITIDGPGGAGKGTLCKAMAEALGWHLL 34
                89**********************975 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.63
                 SEEEEEE--HHHHHHHHHHC CS
         dNK 124 dlliYLkasletclerikkR 143
                  + i+L+as ++  +r  ++
  CTQ27325.1 142 PVKIFLDASADERAHRRMRQ 161
                 56677777766655542222 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.7e-05     0.045      14      80 ..       8     150 ..       5     193 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.7e-05
                 EEEEESTTSSHHHHHHHHTTSS--...SEEEE.........................................EETTCEGGG.B-HHHCCHCEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...xxxxx.........................................xxxxxxxxx.xxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkp...teGei.........................................lldgkdlke.qeleslrkeigvlpqe 67 
                 + i G+ GaGK tL+k++a+ l +   ++G i                                          l+g+d+++ ++++++ +  + +   
  CTQ27325.1   8 ITIDGPGGAGKGTLCKAMAEALGWhllDSGAIyrvlalaalhhhvdveseealvplaahldvrfistdgnlevVLEGEDVSSeIRTQEVANAASKVAAF 106
                 6788****************9999888999998888887777777777777777777766666666666666666666666543333333444444444 PP

                 --S-TTSBHHHH................................H CS
                 xxxxxxxxxxxx................................x RF
    ABC_tran  68 pqlfpeltvren................................e 80 
                 p++ + l +r++                                 
  CTQ27325.1 107 PRVREAL-LRRQrafrelpgliadgrdmgtvvfpdapvkifldaS 150
                 3333333.2222344445666666666666666666666666653 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   5.7e-05     0.093      21      47 ..       7      33 ..       1      55 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.7e-05
                EEEEEESTTSSHHHHHHHHHHHTT--- CS
        TsaE 21 vilLeGdLGaGKTtlvrglakalgvee 47
                vi+++G+ GaGK tl++++a+alg + 
  CTQ27325.1  7 VITIDGPGGAGKGTLCKAMAEALGWHL 33
                6999*******************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 1651.17
//
Query:       CTQ27326.1  [L=557]
Description: 30S ribosomal protein S1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     7e-100  327.5  36.6      1e-21   77.0   0.7    6.1  6  S1        S1 RNA binding domain
    1.4e-11   45.1  13.5       0.01   16.6   0.1    6.7  7  PCB_OB    Penicillin-binding protein OB-like domain
    0.00018   21.5   9.4        7.3    6.7   0.2    6.2  5  S1_2      S1 domain
      0.003   17.5   4.3        1.9    8.5   0.0    4.5  4  CsrA      Global regulator protein family
  ------ inclusion threshold ------
       0.49   10.3  15.0         28    4.7   0.4    6.9  7  BPL_C     Biotin protein ligase C terminal domain
        2.5    8.1   9.6        1.5    8.8   0.4    4.6  5  DUF1344   Protein of unknown function (DUF1344)


Domain annotation for each model (and alignments):
>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.8   2.8e-10   8.3e-07       4      66 ..      20      78 ..      17      87 .. 0.91
   2 !   38.8   0.7     3e-13     9e-10       4      75 .]     104     171 ..     102     171 .. 0.95
   3 !   75.7   0.3   8.7e-25   2.6e-21       3      75 .]     190     260 ..     188     260 .. 0.97
   4 !   72.4   0.4   9.9e-24   2.9e-20       3      75 .]     275     347 ..     273     347 .. 0.97
   5 !   77.0   0.7   3.4e-25     1e-21       2      75 .]     361     434 ..     360     434 .. 0.98
   6 !   58.0   2.1   3.1e-19   9.2e-16       3      75 .]     449     520 ..     448     520 .. 0.98

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2.8e-10
                TTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETT CS
          S1  4 kgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkd 66
                 g +v G+V+ ++k+ + V+ g + e  +pa++ ++     +++ +++vGdev+v ++ v++ 
  CTQ27326.1 20 PGSIVRGVVVAIDKDVVLVDAGLKSESAIPAEQFKNA----QGELEIQVGDEVDVALDAVEDG 78
                799********************************98....9****************99976 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 3e-13
                 TTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   4 kgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                   e v+G++   +kgG+ Vel  g+++f+p s+++ +   +++d+   +G+e+++kv+k+d +r+++++s++
  CTQ27326.1 104 DAETVTGVINGKVKGGFTVELN-GIRAFLPGSLVDVR---PVRDTLHLEGKELEFKVIKLDQKRNNVVVSRR 171
                 5789******************.************77...*****************************986 PP

  == domain 3  score: 75.7 bits;  conditional E-value: 8.7e-25
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 ++g +v+G+V+++t++GafV+lg gv+g++++ +++++ rv++p+e + vGde+ vkvlk+d++r r++l +k
  CTQ27326.1 190 QEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWK-RVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLK 260
                 79*********************.**************.******************************9875 PP

  == domain 4  score: 72.4 bits;  conditional E-value: 9.9e-24
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                  +g+ ++G Vt++t++G fVe+++gveg+v++se+++ +++ +p++v+ vGd v+v vl++d++rrri+l +k
  CTQ27326.1 275 PEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 347
                 6899*****************************************************************9875 PP

  == domain 5  score: 77.0 bits;  conditional E-value: 3.4e-25
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 ++kg++veG+++s+t++G+f+ l++g++g+v++s++s+++ +e+  +++k+Gde+ ++vl+vd +r+ri+l +k
  CTQ27326.1 361 HNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVK 434
                 89*********************************************************************986 PP

  == domain 6  score: 58.0 bits;  conditional E-value: 3.1e-19
                 TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 +kg++v G+Vt v+ +Ga Vel  gveg++ ase srd rved + vl+vGdev++k ++vd+++r ++ls++
  CTQ27326.1 449 KKGAIVVGKVTAVDAKGATVELADGVEGYLRASEASRD-RVEDATLVLSVGDEVEAKFTGVDRKNRVVSLSVR 520
                 79************************************.*******************************986 PP

>> PCB_OB  Penicillin-binding protein OB-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0039        12      21      72 ..       9      61 ..       2      78 .. 0.77
   2 ?   -0.9   0.0      0.92   2.8e+03      24      93 ..      97     136 ..      81     172 .. 0.58
   3 !   13.3   0.1   3.5e-05      0.11      19      99 ..     180     247 ..     166     263 .. 0.80
   4 !   16.6   0.1   3.4e-06      0.01      36      99 ..     281     334 ..     263     349 .. 0.84
   5 ?    0.4   0.0      0.36   1.1e+03      24      66 ..     356     398 ..     343     407 .. 0.85
   6 ?    1.8   0.2      0.13   3.9e+02      29      51 ..     410     431 ..     397     439 .. 0.73
   7 !    8.2   0.3    0.0014       4.2      29      91 ..     448     499 ..     435     511 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0039
                HHHHCCTSS.TCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTT CS
      PCB_OB 21 leealkklp.dsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvls 72
                +ee lk+++ + g+++ +vV++++++ + v    +++  ip+e+ k a+  l+
  CTQ27326.1  9 FEESLKEIEtRPGSIVRGVVVAIDKDVVLVDAGLKSESAIPAEQFKNAQGELE 61
                57778887735589******************99************9998554 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.92
                 HCCTSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTEEE CS
      PCB_OB  24 alkklpdsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGdvv 93 
                 +l+k+ +  e +++v+    + +++v+l +g ++++p +                             +v
  CTQ27326.1  97 TLEKAYEDAETVTGVINGKVKGGFTVEL-NGIRAFLPGS-----------------------------LV 136
                 4555555555556666555555555555.5544444444.............................33 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 3.5e-05
                 HHHHHHCCTSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTEEEEEEE-T CS
      PCB_OB  19 ealeealkklpdsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGdvvlvrkee 99 
                 ++  ++l +  ++g+ ++++V + ++ +a v l +g  g + + +++w r            k +s+++++Gd + v+  +
  CTQ27326.1 180 AER-DQLLENLQEGMEVKGIVKNLTDYGAFVDL-GGVDGLLHITDMAWKRV-----------KHPSEIVNVGDEITVKVLK 247
                 333.44555556788899***************.***************99...........89************99776 PP

  == domain 4  score: 16.6 bits;  conditional E-value: 3.4e-06
                 EEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTEEEEEEE-T CS
      PCB_OB  36 pAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGdvvlvrkee 99 
                 ++ V++ ++ +  v++++g +g + +++++w +k +           +s+v+++Gdvv v+  +
  CTQ27326.1 281 TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNI----------HPSKVVNVGDVVEVMVLD 334
                 56799999**************************54..........699*********998766 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.36
                 HCCTSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTT CS
      PCB_OB  24 alkklpdsgelrpAvVlsvseksarvglrdgetgtipleglkw 66 
                 + +++++ g+ +++ + s+++ ++ +gl++g  g + l++++w
  CTQ27326.1 356 QFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISW 398
                 5567778899999999999**********************99 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.13
                 STCTTEEEEEEEEEETTEEEEEE CS
      PCB_OB  29 pdsgelrpAvVlsvseksarvgl 51 
                 +  g+  +AvVl+v++++ r+ l
  CTQ27326.1 410 K-KGDEIAAVVLQVDAERERISL 431
                 3.456679*******99888876 PP

  == domain 7  score: 8.2 bits;  conditional E-value: 0.0014
                 STCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTE CS
      PCB_OB  29 pdsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGd 91 
                 ++ g ++ + V++v++k+a+v+l+dg +g + +++ +  r            ++a+ vl++Gd
  CTQ27326.1 448 NKKGAIVVGKVTAVDAKGATVELADGVEGYLRASEASRDRV-----------EDATLVLSVGD 499
                 5678899999*******************999887664444...........45555555555 PP

>> S1_2  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.024        71       2      46 ..      21      70 ..      20      72 .. 0.72
   2 !    5.7   0.1    0.0052        16       6      46 ..     196     243 ..     192     245 .. 0.69
   3 !    6.7   0.2    0.0024       7.3       2      35 ..     277     310 ..     277     342 .. 0.82
   4 !    5.7   0.0    0.0052        16       2      34 ..     364     396 ..     363     416 .. 0.83
   5 ?   -1.1   0.0      0.67     2e+03       2      35 ..     451     484 ..     451     503 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.024
        S1_2  2 GkintlkvlretdfgyfLqkdesgevlLpkkevp.....eeleiGdeveV 46
                G i++  v+ +++  + ++++ + e   p ++ +      e+++Gdev+V
  CTQ27326.1 21 GSIVRGVVVAIDKDVVLVDAGLKSESAIPAEQFKnaqgeLEIQVGDEVDV 70
                77777778888888888887777888888777654433358899*****9 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0052
        S1_2   6 tlkvlretdfgyfLqkdesgevlLpkkevp........eeleiGdeveV 46 
                 +  v+  td g+f++ ++ ++ lL+  ++         e +++Gde++V
  CTQ27326.1 196 KGIVKNLTDYGAFVDLGG-VDGLLHITDMAwkrvkhpsEIVNVGDEITV 243
                 6679999**********9.******976643111122344556666665 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0024
        S1_2   2 GkintlkvlretdfgyfLqkdesgevlLpkkevp 35 
                 G+  t +v+  td g f++ +e++e l++ +e++
  CTQ27326.1 277 GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMD 310
                 6667899**********************99986 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0052
        S1_2   2 GkintlkvlretdfgyfLqkdesgevlLpkkev 34 
                 G  ++ k++ +tdfg+f+  d++ + l++ +++
  CTQ27326.1 364 GDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDI 396
                 566789************988888877776665 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 0.67
        S1_2   2 GkintlkvlretdfgyfLqkdesgevlLpkkevp 35 
                 G i+  kv+  + +g+ ++  +++e  L  +e+ 
  CTQ27326.1 451 GAIVVGKVTAVDAKGATVELADGVEGYLRASEAS 484
                 5667778888888888888666677777766665 PP

>> CsrA  Global regulator protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00064       1.9       8      32 ..     231     255 ..     229     260 .. 0.80
   2 !    5.4   0.1    0.0061        18      12      32 ..     322     342 ..     317     347 .. 0.85
   3 ?   -0.2   0.1      0.32   9.6e+02      15      32 ..     412     429 ..     410     434 .. 0.77
   4 ?    0.1   0.0      0.26   7.8e+02      13      37 ..     496     522 ..     489     526 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00064
                 TT-EEEETTTEEEEEEEEETTEEEE CS
        CsrA   8 kgEsIvIgddIeitvlevegnqvrl 32 
                 + E + +gd+I+++vl+ + ++ r+
  CTQ27326.1 231 PSEIVNVGDEITVKVLKFDRERTRV 255
                 568899************9888553 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0061
                 EEETTTEEEEEEEEETTEEEE CS
        CsrA  12 IvIgddIeitvlevegnqvrl 32 
                 + +gd +e+ vl++++++ r+
  CTQ27326.1 322 VNVGDVVEVMVLDIDEERRRI 342
                 578************999777 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.32
                 TTTEEEEEEEEETTEEEE CS
        CsrA  15 gddIeitvlevegnqvrl 32 
                 gd+I  +vl+v++++ r+
  CTQ27326.1 412 GDEIAAVVLQVDAERERI 429
                 799999999999887554 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.26
                 EETTTEEEEEEEEETTE..EEEEEE-- CS
        CsrA  13 vIgddIeitvlevegnq..vrlgIeAP 37 
                  +gd++e ++++v+ ++  v l + A 
  CTQ27326.1 496 SVGDEVEAKFTGVDRKNrvVSLSVRAK 522
                 579**********97776788888875 PP

>> BPL_C  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.16   4.9e+02      10      25 ..      18      34 ..      15      37 .. 0.83
   2 ?    2.3   0.0     0.054   1.6e+02      11      28 ..     191     208 ..     188     209 .. 0.84
   3 ?    0.7   0.0      0.17     5e+02      11      26 ..     276     291 ..     270     307 .. 0.79
   4 ?   -0.5   0.1      0.39   1.2e+03      12      24 ..     325     337 ..     321     338 .. 0.82
   5 ?    4.7   0.4    0.0095        28      12      30 ..     364     382 ..     359     394 .. 0.83
   6 ?    3.5   0.1     0.023        69       6      27 ..     445     466 ..     442     475 .. 0.88
   7 ?    0.5   0.0       0.2     6e+02      12      23 ..     498     509 ..     492     511 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.16
                E.TSCEEEEEEEEE-TT CS
       BPL_C 10 d.edgkveGiavGIddd 25
                + ++ +v+G++v Id d
  CTQ27326.1 18 TrPGSIVRGVVVAIDKD 34
                4478899********86 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.054
                 TSCEEEEEEEEE-TTSEE CS
       BPL_C  11 edgkveGiavGIdddGaL 28 
                 e+ +v Gi++ ++d+Ga 
  CTQ27326.1 191 EGMEVKGIVKNLTDYGAF 208
                 47899***********96 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.17
                 TSCEEEEEEEEE-TTS CS
       BPL_C  11 edgkveGiavGIdddG 26 
                 e+ k++G+++ ++d+G
  CTQ27326.1 276 EGTKLTGRVTNLTDYG 291
                 45567**********9 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.39
                 SCEEEEEEEEE-T CS
       BPL_C  12 dgkveGiavGIdd 24 
                 +++ve ++ +Id+
  CTQ27326.1 325 GDVVEVMVLDIDE 337
                 5689*******98 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.0095
                 SCEEEEEEEEE-TTSEEEE CS
       BPL_C  12 dgkveGiavGIdddGaLll 30 
                 ++ veG+++ I+d+G  + 
  CTQ27326.1 364 GDRVEGKIKSITDFGIFIG 382
                 6779***********9886 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.023
                 EEEEETSCEEEEEEEEE-TTSE CS
       BPL_C   6 VtlededgkveGiavGIdddGa 27 
                 V l  ++ +v+G+++ +d+ Ga
  CTQ27326.1 445 VALNKKGAIVVGKVTAVDAKGA 466
                 6677788999**********97 PP

  == domain 7  score: 0.5 bits;  conditional E-value: 0.2
                 SCEEEEEEEEE- CS
       BPL_C  12 dgkveGiavGId 23 
                 +++ve++++G+d
  CTQ27326.1 498 GDEVEAKFTGVD 509
                 789*******99 PP

>> DUF1344  Protein of unknown function (DUF1344)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   3.6e+03      37      50 ..      62      75 ..      60      78 .. 0.80
   2 ?   -2.4   0.0       1.6   4.8e+03      34      43 ..     186     195 ..     181     197 .. 0.86
   3 ?    1.3   0.1      0.11   3.2e+02       3      23 ..     366     386 ..     364     388 .. 0.83
   4 ?   -3.1   0.0       2.7     8e+03       3      20 ..     414     431 ..     413     431 .. 0.82
   5 ?    8.8   0.4   0.00049       1.5       4      57 ..     454     515 ..     452     518 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
     DUF1344 37 LkvGvkVvVfYtvv 50
                ++vG +V V+ + v
  CTQ27326.1 62 IQVGDEVDVALDAV 75
                899******98865 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.6
     DUF1344  34 idgLkvGvkV 43 
                 +++L+ G++V
  CTQ27326.1 186 LENLQEGMEV 195
                 799*****99 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.11
     DUF1344   3 dvegtIkkidkkalsitLdDG 23 
                  veg+Ik+i   +  i Ld G
  CTQ27326.1 366 RVEGKIKSITDFGIFIGLDGG 386
                 69*******998888888866 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 2.7
     DUF1344   3 dvegtIkkidkkalsitL 20 
                 ++ +++ ++d++ + i+L
  CTQ27326.1 414 EIAAVVLQVDAERERISL 431
                 567889999999999987 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.00049
     DUF1344   4 vegtIkkidkkalsitLdDG.ktYklpeefdidg.......LkvGvkVvVfYtvvdgkrvit 57 
                 v g+++++d+k++++ L DG + Y    e+  d        L+vG +V   +t vd k+ + 
  CTQ27326.1 454 VVGKVTAVDAKGATVELADGvEGYLRASEASRDRvedatlvLSVGDEVEAKFTGVDRKNRVV 515
                 569*****************445777777765542223444667777777777777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3888.79
//
Query:       CTQ27327.1  [L=95]
Description: integration host factor (IHF), DNA-binding protein, beta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-30  104.3   0.0    3.3e-30  104.1   0.0    1.0  1  Bac_DNA_binding  Bacterial DNA-binding protein
    1.3e-08   35.0   0.0    1.4e-08   34.8   0.0    1.0  1  HU-HIG           HU domain fused to wHTH, Ig, or Glycine-rich
    0.00015   21.5   0.0    0.00021   21.1   0.0    1.2  1  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.015   15.4   0.0    1.1  1  HU-CCDC81_euk_1  CCDC81 eukaryotic HU domain 1
      0.068   13.2   0.0       0.13   12.3   0.0    1.5  1  HU-DNA_bdg       DNA-binding domain
       0.12   12.6   0.0       0.18   11.9   0.0    1.2  1  HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
        0.2   11.1   0.0       0.25   10.7   0.0    1.1  1  Ribosomal_L27_C  Ribosomal L27 protein C-terminal domain


Domain annotation for each model (and alignments):
>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.0   1.3e-33   3.3e-30       1      90 []       1      91 [.       1      91 [. 0.96

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 1.3e-33
                     EEHHHHHHHHH.TT----HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEEEEE--BS-B-TTT--B--B--EEEEEEEE-HHHHHHH. CS
  Bac_DNA_binding  1 mtkkeLieeia.ektgltkkdakrvveafldtikeaLkkgekvelsgFGtfkvkerkartgrnpkTgekvkiparkvvkFkpskelkeavn 90
                     mtk+eLie++a +++++  k ++++v+++l+ ++++L++ge++e++gFG+f+++ r++rtgrnpkTg+kv+ + ++v++Fkp+kel+++ n
       CTQ27327.1  1 MTKSELIERLAsQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
                     9**********55556************************************************************************986 PP

>> HU-HIG  HU domain fused to wHTH, Ig, or Glycine-rich motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   5.6e-12   1.4e-08      36     117 ..       5      89 ..       1      93 [. 0.88

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 5.6e-12
      HU-HIG  36 eLce.eiskrstlsrgdvkavldaledelkeaLadGerVeLgelGyFslslks.kgvedekevransikkkki.nfrpgkklkke 117
                 eL+e   s++s+++   v+ +++++ ++++  La+Ger+e+ ++G+Fsl  ++ ++  ++k+ ++ +++ k + +f+pgk+l+++
  CTQ27327.1   5 ELIErLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRApRTGRNPKTGDKVELEGKYVpHFKPGKELRDR 89 
                 55540567899******************************************7777889999*********988*******987 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   8.1e-08   0.00021       7      50 ..      11      54 ..       5      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 8.1e-08
  HU-CCDC81_bac_2  7 iaeaegisyeeAlqkiekeveelkqeLeeegrveleniGeLsln 50
                      +++ +i+ + +  ++++  e++ ++L +++r+e+ + G++sl 
       CTQ27327.1 11 ASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLH 54
                     57999************************************986 PP

>> HU-CCDC81_euk_1  CCDC81 eukaryotic HU domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   5.9e-06     0.015      16      89 ..      14      89 ..       4      94 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.9e-06
  HU-CCDC81_euk_1 16 kplltteqllliWdalgeyieeqlekgkgvhipnfGtFtfe...apdldlkadknellrdkklrrPvFvvdekfkqt 89
                     + +++++ +  + +++ e+ +  l +g  + i +fG+F++     +++   ++ ++++ + k+  P F + +++   
       CTQ27327.1 14 QSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHyraPRTGRNPKTGDKVELEGKY-VPHFKPGKELRDR 89
                     457889999999****************************96542222222222223333223.4777777776655 PP

>> HU-DNA_bdg  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.1e-05      0.13      30      85 ..       2      58 ..       1      92 [. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.1e-05
                -HHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTTT-EEE.-SSEEEEEEEES- CS
  HU-DNA_bdg 30 tledIidemvkegtevrketienilnlykrevseaileGysVn.tglgrasltikGv 85
                t +++i++++ +++ + + ++e++++ + + ++  +++G+ ++  g+g+ sl  +  
  CTQ27327.1  2 TKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEiRGFGSFSLHYRAP 58
                6789************************************99735888888776655 PP

>> HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.2e-05      0.18      11      54 ..      12      53 ..       9      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.2e-05
  HU-CCDC81_euk_2 11 aaaaglsrdvVescvqetfqalgdllrngknvelefkgiGvLsi 54
                     +++++++ + Ve++v+e++      l++g+++e  ++g+G +s+
       CTQ27327.1 12 SQQSHIPAKAVEDAVKEMLEHMASTLAQGERIE--IRGFGSFSL 53
                     7889**************************865..678888876 PP

>> Ribosomal_L27_C  Ribosomal L27 protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.7e-05      0.25     146     190 ..       2      46 ..       1      48 [. 0.95

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.7e-05
  Ribosomal_L27_C 146 lknellkkLkekaseiltkkdkkevkelfkdasefltlseevkLr 190
                      +k+el+++L ++ s+i  k   ++vke+++  ++ l + e++++r
       CTQ27327.1   2 TKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIR 46 
                      699*********99**************************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      784  (0.043728); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 716.66
//
Query:       CTQ27328.1  [L=754]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-53  179.3  40.7    9.2e-53  179.3  40.7    1.8  2  Competence     Competence protein
    6.2e-18   65.5   0.4      1e-17   64.8   0.4    1.4  1  Lactamase_B    Metallo-beta-lactamase superfamily
    0.00017   21.3   9.5    0.00017   21.3   9.5    7.2  5  DUF4131        Domain of unknown function (DUF4131)
     0.0011   18.6   0.3     0.0026   17.3   0.3    1.8  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Competence  Competence protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   2.4       1.5   6.6e+03      52      54 ..      43      45 ..       4      78 .. 0.46
   2 !  179.3  40.7     2e-56   9.2e-53       2     264 ..     201     465 ..     200     473 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.5
  Competence 52 plr 54
                ++r
  CTQ27328.1 43 HGR 45
                111 PP

  == domain 2  score: 179.3 bits;  conditional E-value: 2e-56
  Competence   2 llGdrselseevweafqktGlaHllAiSGlHvglvagllllllrrl..llrlplrkla..allallflllYallaGfspsvlRAllmlllvllalllkr 96 
                  +G+r +l++e +  +q+tG++Hl+AiSGlH++l+a l++lllr +  +l + +  ++  ++++l+ +++Ya+l+G++p++lR++l l++  +++l ++
  CTQ27328.1 201 GMGERLSLPTEIKVLMQNTGTSHLMAISGLHIALAASLIMLLLRGVqyILPGRWIGWRlpLVAGLAGAVGYAWLTGMQPPALRTCLGLAVCCALRLSGQ 299
                 58********************************************665555555555889************************************** PP

  Competence  97 kaspldalalaallvllvdPlallsaGfqLSflavagilllaprlekalkrlskkvrelllla.vslaaqlallplllylfgqislvsllaNllavPlv 194
                 ++++++++++++ ++l+ dPla+ls +++LS  avag+++++++l+ +  r++++++++++l+ ++  ++l+llpl+l+lf+++sl+s+ aNllavPlv
  CTQ27328.1 300 RWTAWQVWLCCLGAILVADPLAVLSQSLWLSAFAVAGLIFWFQWLPLPAGRWRWPWKTIIALVhLQAGVTLLLLPLQLLLFHGVSLTSMAANLLAVPLV 398
                 *********************************************************999998899999****************************** PP

  Competence 195 sllvlplallallllllp..slaalllqladlllelllellellaslplaslvlgkpslllllllyllllll 264
                 +ll +pl+l+a+l+ l    ++++ll+ +ad +l ll++ l+ l +      +l+  + +l++ ++ +ll++
  CTQ27328.1 399 TLLAVPLILTAMLVHLSGpeIVESLLWLAADRVLALLFWGLRRLPD-----GWLTLDTRWLWISILPWLLVM 465
                 **************9988999********************99999.....333333333333333333333 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.4   2.3e-21     1e-17       2     186 ..     505     678 ..     504     689 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 2.3e-21
                  CCCSSEEEEEEETTCEEEES--SCHHHHHHHH..HHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHH CS
  Lactamase_B   2 gpdpvnsyliegdggviLiDtGtsteaaraal..elaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkgll 97 
                  +++++ +++ie  g+++L+DtG  +++++  +  ++  l++  +++  + l+H HlDH Ggl+ + +a++ +++  ++ ++++++ +++         
   CTQ27328.1 505 DVGQGLAMVIERHGKALLYDTGPAWPQGDSGQqvIIPWLRWHHLQLQGIMLSHEHLDHRGGLDSVLQAWPQAWVRSPLGWAHHLPCHRG--------- 593
                  578999**********************************************************************************5......... PP

                  TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC......TTCEEE-SHCHHHHHHHHHHHHH CS
  Lactamase_B  98 lagvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridl.....tlrgaevrdpsdaekyldsllkla 186
                           +++++ +  + + +++ + t   + +++++++++g  ++l+tGD   ++e+++i++     t    +v+++++++++ + l++++
   CTQ27328.1 594 ---------ERWQWQGLNFQALWPLPGSTAKGNNHSCVVRIDDGRSSILLTGDIERQAEQAMISRywrhlTSTLIQVPHHGSNTSSSALLIRRV 678
                  .........5*******************************************************99999999999999999999987777655 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   9.5   3.9e-08   0.00017      10     154 ..      28     157 ..       5     168 .. 0.76
   2 ?   -0.4   5.4      0.17   7.7e+02       8      51 ..     232     275 ..     226     284 .. 0.53
   3 ?   -0.9   3.4      0.25   1.1e+03       7      42 ..     281     316 ..     275     318 .. 0.63
   4 ?   -5.7  11.0         4   1.8e+04       9      50 ..     327     373 ..     319     410 .. 0.73
   5 ?   -6.7   9.5         4   1.8e+04      27      55 ..     447     475 ..     391     488 .. 0.63

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.9e-08
     DUF4131  10 lalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqllesgqeviveGvvaslpeltgsgtrfvlevervlsagktkpvsgrv 108
                  ++++ +l+l+l++      r v+++++ lll++++++ ++++  ++++l  +++ + evi    ++++  +t ++ ++v         g+    +  v
  CTQ27328.1  28 SLAGASALALALIR---LHGRAVAGVAMTLLLVVWGVLSAHQALWPTRHLTGAIR-QAEVI----LSETDGQTLHRGQMV------RLRGRYLFPPVGV 112
                 23333333333333...688999*******************************9.87777....655555554444444......3335555555566 PP

     DUF4131 109 lvtvpkspaeglrpGdrlrltgrlkrprpatNpggFDyraYLarqg 154
                  ++ +  pa+    G+ ++ t rl+++++  N ggFD ++Y  +q+
  CTQ27328.1 113 TLYGELAPAP-ACAGQHWLMTLRLRPVHGQLNDGGFDSQRYALAQH 157
                 6666666666.77****************************99886 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.17
     DUF4131   8 vllalllllllllllllrrrprrrvllllllllllallgfalra 51 
                 ++la+ l++lll+++++    r+  + l l++ l++++g+a+ +
  CTQ27328.1 232 IALAASLIMLLLRGVQYILPGRWIGWRLPLVAGLAGAVGYAWLT 275
                 45666677777776666543333334444444444444444433 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.25
     DUF4131   7 lvllalllllllllllllrrrprrrvllllllllll 42 
                 ++  +l+l+++++l l  +r + ++v+l++l ++l+
  CTQ27328.1 281 ALRTCLGLAVCCALRLSGQRWTAWQVWLCCLGAILV 316
                 555566666666666666666777777777776665 PP

  == domain 4  score: -5.7 bits;  conditional E-value: 4
     DUF4131   9 llalllllllllllllrr.....rprrrvllllllllllallgfalr 50 
                 l++++++++ l++++++      r+r+ + ++++l+ l a++ ++l 
  CTQ27328.1 327 LWLSAFAVAGLIFWFQWLplpagRWRWPWKTIIALVHLQAGVTLLLL 373
                 44455555555555544567888888888888888777777766654 PP

  == domain 5  score: -6.7 bits;  conditional E-value: 4
     DUF4131  27 rprrrvllllllllllallgfalrapqpn 55 
                  +  +++l +++l +l+++g+ +++++++
  CTQ27328.1 447 LTLDTRWLWISILPWLLVMGWRFQSWRHS 475
                 44444444444444444444444444433 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.3   5.7e-07    0.0026       4      57 ..     522     576 ..     519     646 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.7e-07
                    EES--TTHHHH..HTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EE CS
  Lactamase_B_2   4 LiDagpdlrqq..alralqPvelrdelppidaVllthaHyDHlaglltlrelrpkk 57 
                    L D+gp + q    ++   P  ++++  +++++ l+h+H DH  gl+++ + +p+ 
     CTQ27328.1 522 LYDTGPAWPQGdsGQQVIIPWLRWHH-LQLQGIMLSHEHLDHRGGLDSVLQAWPQA 576
                    67788886666543333345555555.689*********************99963 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5218.38
//
Query:       CTQ27329.1  [L=582]
Description: fused lipid transporter subunits of ABC superfamily: membrane component; ATP-binding component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-60  205.5  15.3    1.6e-60  205.1  15.3    1.2  1  ABC_membrane    ABC transporter transmembrane region
    1.3e-36  126.1   0.2    1.2e-35  123.1   0.0    2.2  2  ABC_tran        ABC transporter
    1.1e-09   38.1   6.9    1.7e-09   37.5   3.9    2.4  2  SMC_N           RecF/RecN/SMC N terminal domain
      6e-06   26.7   0.1    1.1e-05   25.8   0.1    1.4  1  AAA_16          AAA ATPase domain
    4.7e-05   23.2   0.4    0.00013   21.8   0.0    1.9  2  DEAD            DEAD/DEAH box helicase
    0.00043   19.6   0.1     0.0018   17.6   0.0    2.0  2  Zeta_toxin      Zeta toxin
     0.0015   18.8   0.3      0.034   14.4   0.3    2.5  1  AAA_22          AAA domain
     0.0042   16.8   0.1      0.014   15.1   0.1    1.9  1  AAA_29          P-loop containing region of AAA domain
     0.0046   16.7   0.0     0.0082   15.9   0.0    1.4  1  AAA_15          AAA ATPase domain
     0.0047   17.1   0.9      0.014   15.5   0.3    2.1  2  DUF87           Helicase HerA, central domain
      0.006   16.5   0.0      0.012   15.5   0.0    1.5  1  APS_kinase      Adenylylsulphate kinase
     0.0086   15.8   0.0      0.018   14.8   0.0    1.7  1  AAA_24          AAA domain
  ------ inclusion threshold ------
      0.013   14.7   0.1      0.022   14.0   0.1    1.3  1  DUF2075         Uncharacterized conserved protein (DUF2075)
      0.016   15.1   0.1       0.05   13.5   0.0    1.8  1  RsgA_GTPase     RsgA GTPase
      0.017   14.8   0.0      0.049   13.3   0.0    1.7  1  AAA_30          AAA domain
      0.019   14.5   0.2      0.065   12.8   0.0    1.9  2  AAA_25          AAA domain
      0.021   15.4   0.1      0.073   13.6   0.1    2.1  1  AAA_18          AAA domain
      0.022   14.2   4.9       0.02   14.3   3.6    1.6  1  ABC_membrane_2  ABC transporter transmembrane region 2
      0.029   13.5   0.0       0.13   11.4   0.0    2.0  2  NB-ARC          NB-ARC domain
       0.03   14.7   0.0       0.36   11.2   0.0    2.5  1  AAA             ATPase family associated with various cellula
      0.043   13.6   0.7        1.4    8.6   0.1    2.2  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
       0.12   12.5   0.0       0.41   10.8   0.0    2.0  2  MMR_HSR1        50S ribosome-binding GTPase
       0.13   12.7   0.2       0.65   10.5   0.0    2.1  2  AAA_23          AAA domain
       0.34   10.9   1.1          2    8.4   0.1    2.5  2  Noelin-1        Neurogenesis glycoprotein


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.1  15.3   2.1e-63   1.6e-60       1     273 [.      27     297 ..      27     298 .. 0.98

  Alignments for each domain:
  == domain 1  score: 205.1 bits;  conditional E-value: 2.1e-63
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCH CS
  ABC_membrane   1 liliillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsv 97 
                   li++ ++++l+ + + ++ ++l+ +ld+ ++k d +   l  + l++++l+++++i+++++sy+++++++++++++rr+lf +++ +p++ffd++s+
    CTQ27329.1  27 LIVAAVALVLNAGSDTFMLSLLKPLLDDGFGKTDRSV--LLWMPLVVIGLMVLRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQST 121
                   688999*************************999999..********************************************************** PP

                   HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH CS
  ABC_membrane  98 GellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVk 194
                   G+llsr+t d +++ ++ ++ l+++++  ++++g++++mfy++w+l+l+l++++p++ + + v++k++++++k++q++++++++ ae++l+g++ V 
    CTQ27329.1 122 GTLLSRITYDSEQVASSSSSALITVVREGASIIGLFVMMFYYSWQLSLILIVLAPIVSVAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVL 218
                   ************************************************************************************************* PP

                   HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 195 afgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273
                    fg++e ++++f+k +++++ +g+k+  a++++ +i+ql+++l+ a++l+ +++ +  ++l+ g+++v+ s +  l+ +
    CTQ27329.1 219 MFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRP 297
                   *****************************************************************99999998888877 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       1.3   9.3e+02      29      75 ..     190     244 ..     186     287 .. 0.68
   2 !  123.1   0.0   1.5e-38   1.2e-35       1     137 []     359     509 ..     359     509 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.3
                 HHHTTSS--SEEEEEETTCEGGG........B-HHHCCHCEEEE-SS--S-TTSB CS
                 xxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  29 kllagllkpteGeilldgkdlke........qeleslrkeigvlpqepqlfpelt 75 
                 + +++++++t+G+++   +++ +           e+  k++  ++ + +l+  + 
  CTQ27329.1 190 RNISKNMQNTMGQVTTSAEQMLKghkevlmfGGQEVETKRFDKVSNKMRLQGMKM 244
                 6688899999999988866666656666666555555666666666655555554 PP

  == domain 2  score: 123.1 bits;  conditional E-value: 1.5e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..............esdeei 85 
                 l+n++l++ eg++va+vG++G+GKSt+++l+++ ++ + G+illdg+dl+e +l+slr +++ ++q+ +lf+++ v++n              e+ +++
  CTQ27329.1 359 LRNINLDIPEGKTVALVGRSGSGKSTIASLITRFYDVDDGQILLDGHDLREYKLSSLRDQVALVSQNVHLFNDT-VANNiayarteeysreqiEEAARM 456
                 78************************************************************************.99999**99998555444333333 PP

                 HHHHHHSTTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + a+      +         dt++++++  LSgGq+qr+a+arall+++++l+lDE+t+
  CTQ27329.1 457 AYAM------DfinkmdnGLDTIIGENGVMLSGGQRQRIAIARALLRNSPILILDEATS 509
                 3333......2233333477*************************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.5   4.9e+03      84     112 ..     190     218 ..     183     268 .. 0.57
   2 !   37.5   3.9   2.2e-12   1.7e-09      25     212 ..     370     552 ..     358     557 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.5
                 EETTEESSSSSSCEEEEEEEETTSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  84 dnedkklkiekeevsisrrvkrkgeseyk 112
                 +n +k+++ +  +v++s + + kg+ e+ 
  CTQ27329.1 190 RNISKNMQNTMGQVTTSAEQMLKGHKEVL 218
                 44444444444444444444444443332 PP

  == domain 2  score: 37.5 bits;  conditional E-value: 2.2e-12
                 SEEEEEESTTSSHHHHHHHHHHHCTT.......TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGer......sakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingke 117
                 +  a+vG+ GSGKs +   i      +      + + lr+ kls+l    +++ ++ + +v+++ d   +++   ++e + + ++++  +  y+++  +
  CTQ27329.1 370 KTVALVGRSGSGKSTIASLITRFYDVDdgqillDGHDLREYKLSSL----RDQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN 464
                 4568999999999999999964444441111112344555555555....4457777888988778888888888888888999999999999999999 PP

                 E-HHHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 118 vtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvt 212
                    + +  ++ + g+   +LSgG+++ +a+a        + +p+ +lDe  +aLD +  +++   l+e +kn   +vi++r  ++e+ad++v v 
  CTQ27329.1 465 KMDNGLDTIIGENGV---MLSGGQRQRIAIAR----ALLRNSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVE 552
                 999999999999998...7******9888764....457999************************************************99875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   1.5e-08   1.1e-05       7     167 ..     354     533 ..     349     536 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.5e-08
      AAA_16   7 eeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy......salaqalareellrqllde..aesaeleaw 97 
                 +e+++L+++  ++ +g    v l+G sG+GKs+++  + r +  d+g  l    d      +y      +++a +  + +l+++  ++  a ++  e+ 
  CTQ27329.1 354 REVAALRNINLDIPEG--KTVALVGRSGSGKSTIASLITRFYDVDDGQILLDGHDLR----EYklsslrDQVALVSQNVHLFNDTVANniAYARTEEYS 446
                 5777776665555555..78********************99999877766666666....23322223333333334455555555566555666777 PP

      AAA_16  98 rekleeala...................avpelagaea......srllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlrlles.k.pl 167
                 re++eea++                      e            +r + +++r+l  l++ +   +l+lD++   +d++s  +++a l++l+  + +l
  CTQ27329.1 447 REQIEEAARmayamdfinkmdngldtiiG--EN----GvmlsggQRQRIAIARAL--LRN-S--PILILDEATsALDTESERAIQAALDELQKnRtSL 533
                 77777777788989988888776666331..22....144435577777777888..444.3..4999999996788899999******999843233 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       6.3   4.7e+03      60      87 ..     200     225 ..     184     239 .. 0.63
   2 !   21.8   0.0   1.7e-07   0.00013      11     152 ..     366     529 ..     357     541 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6.3
                 HHHHHHHHHHHTTTSTSEEEEEETTSSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  60 aeqtlnnlkkfkkyidlrvlliiggvaa 87 
                 + q+ + +++++k    +++l++gg++ 
  CTQ27329.1 200 MGQVTTSAEQMLKG--HKEVLMFGGQEV 225
                 34566666666664..456666666555 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 1.7e-07
                 HHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS................TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.SEEE..EEETTSSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx..xxxxxxxxxxx RF
        DEAD  11 ilgggdvlvaaeTGsGKTlaflipvlqivyet................kgktgpkalivePtreLaeqtlnnlkkfkkyid.lrvl..liiggvaardq 90 
                 i +g+ v + ++ GsGK++++++     +y+                  ++ + ++ +v+    L ++t+ n   +  + +  r++         a d 
  CTQ27329.1 366 IPEGKTVALVGRSGSGKSTIASLITR--FYDVddgqilldghdlreykLSSLRDQVALVSQNVHLFNDTVANNIAYARTEEySREQieEAARMAYAMDF 462
                 45899************999876554..66645566666667776664344447888888888899998888888877533223331022334556788 PP

                 HHHHHTTCSEEEEEHHHHHHHHHCTSSH.....CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  91 lskldngvdivvgtpgrlddllstgkln.....lsqvrflVlDEadrlldqgfsdfinrilnqlpqi 152
                 ++k+dng+d ++g  g +++  +++++      l++  +l+lDEa   ld + ++ i++ l +l++ 
  CTQ27329.1 463 INKMDNGLDTIIGENGVMLSGGQRQRIAiaralLRNSPILILDEATSALDTESERAIQAALDELQKN 529
                 88889***************8888887777888999***********************99999543 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.4e-06    0.0018      17      83 ..     370     433 ..     358     447 .. 0.80
   2 ?   -1.7   0.1       1.9   1.4e+03      76     113 ..     511     548 ..     504     558 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.4e-06
  Zeta_toxin  17 klillgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPeyeeilkadpkkaseltqkdasel 83 
                 k + l+G +G+GKs++a+l+++  + +++ + ld+ dlRe+    ++ l+++++ +s++++ +  ++
  CTQ27329.1 370 KTVALVGRSGSGKSTIASLITRFYDVDDGQILLDGHDLREYK--LSS-LRDQVALVSQNVHLFNDTV 433
                 67889***********************************97..344.5556666666666665555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.9
  Zeta_toxin  76 tqkdaselvekllqeaiengyniivegtlrspdvvkkl 113
                  + ++ +  + +l+e+ +n+ ++++   l+++++++++
  CTQ27329.1 511 LDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEI 548
                 55667777888889999999999988888888877765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.3   4.6e-05     0.034       8      90 ..     372     458 ..     368     542 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.6e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglelka...erlsseell.ealeqalrara 90 
                 ++++G sG+GK+t +  +++ +d +  +    + ++ +++l+s+ ++  l ++ ++ +++   +   + +++ee+  e++e+a+r ++
  CTQ27329.1 372 VALVGRSGSGKSTIASLITRFYDVDDGQILlDGHDLREYKLSSLRDQVALVSQNVHLFNDTVANniaY-ARTEEYSrEQIEEAARMAY 458
                 789*******************9865555554444446666666666666555555555444447743.3333333355555555444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.8e-05     0.014      19      38 ..     366     385 ..     358     390 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.8e-05
      AAA_29  19 idlkg.atlltGpsGsGKSTl 38 
                 i  +g ++ l+G+sGsGKST+
  CTQ27329.1 366 IP-EGkTVALVGRSGSGKSTI 385
                 44.455999***********8 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.1e-05    0.0082      14      69 ..     359     411 ..     358     479 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-05
      AAA_15  14 lkdveidlsee.ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleife 69 
                 l+++ +d+ e  +  l+G+ +sGKS+i+ ++  F + +    +  i ++ +dl++++
  CTQ27329.1 359 LRNINLDIPEGkTVALVGRSGSGKSTIASLITRFYDVD----DGQILLDGHDLREYK 411
                 677777777775779********************988....555555555555543 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         8     6e+03     140     140 ..     223     223 ..     181     278 .. 0.48
   2 !   15.5   0.3   1.8e-05     0.014      25      80 ..     371     430 ..     360     556 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8
       DUF87 140 d 140
                 +
  CTQ27329.1 223 Q 223
                 1 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.8e-05
       DUF87  25 HlAilgsTGsGKSntvavLleellekkgatililDpHG..EYgkal....ekllsekvkvit 80 
                  +A +g++GsGKS+ + +L+ + + + +   ++lD H   EY+  +      l+s++v++++
  CTQ27329.1 371 TVALVGRSGSGKSTIA-SLITRFY-DVDDGQILLDGHDlrEYKLSSlrdqVALVSQNVHLFN 430
                 689**********765.6778899.666677889***9999998885555333333333333 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.6e-05     0.012       2      44 ..     369     410 ..     368     439 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-05
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTT CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhg 44 
                 g +v l G sgsGKstia  + +   +     +lLdG  +R+ 
  CTQ27329.1 369 GKTVALVGRSGSGKSTIASLITR-FYDVDDGQILLDGHDLREY 410
                 78999*************99986.5666677789****99975 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.4e-05     0.018       2      61 ..     369     424 ..     368     531 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.4e-05
      AAA_24   2 klkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvelaa 61 
                 ++ ++++G sg+GK+t+a+ +   + f d+++G   ld++++ +  ++  ++d+v+ +++
  CTQ27329.1 369 GKTVALVGRSGSGKSTIASLI---TRFYDVDDGQILLDGHDLREY-KLSSLRDQVALVSQ 424
                 57899****************...99********99999998866.55555555555533 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.9e-05     0.022       7     122 ..     375     529 ..     370     551 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.9e-05
     DUF2075   7 tGvaGtGKtvvllnllael.................eddeeertavylsvNhpl.vlvlrealakke......ekkkkkeafeklssfinnlsef.... 77 
                  G++G+GK+ +++ +   +                 + ++++ +++++s+N  l ++++ +++a+ +      e+ +  +++++   fin+++++    
  CTQ27329.1 375 VGRSGSGKSTIASLITRFYdvddgqilldghdlreyKLSSLRDQVALVSQNVHLfNDTVANNIAYARteeysrEQIEEAARMAYAMDFINKMDNGldti 473
                 49*********9876544444777777777766666555688899999999665166999999998888887777777788889999******99**** PP

     DUF2075  78 ..............kkaeekkeepkedvvivDEAhrlltksdqaekqseenqlkelmkr 122
                               + a++++  ++  ++i DEA  +l++++    +  ++ l+el k+
  CTQ27329.1 474 igengvmlsggqrqRIAIARALLRNSPILILDEATSALDTESE---RAIQAALDELQKN 529
                 **********9987788999999***************94444...3335666666655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.6e-05      0.05      88     120 ..     357     390 ..     316     403 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.6e-05
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinall 120
                  ++l++++  + + kt++lvG SG GKSt+   ++
   CTQ27329.1 357 AALRNINLDIPEgKTVALVGRSGSGKSTIASLIT 390
                  5566666666655***************987765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.6e-05     0.049      19     108 ..     370     519 ..     366     536 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.6e-05
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkv..Laeelgieastiakllkrlk.................................. 81 
                 ++++l+G+ G+GK+t+ + +++ ++ + g++++  +  +  k   L++++ + +++++ + ++ +                                  
  CTQ27329.1 370 KTVALVGRSGSGKSTIASLITRFYDVDDGQILLDGHDLREYKLssLRDQVALVSQNVHLFNDTVAnniayarteeysreqieeaarmayamdfinkmdn 468
                 47899**********************888887777766655444888988888888888877778888888888888888888888888888888888 PP

      AAA_30  82 .......................grarlepgtllivDEagmv.dtkqlaal 108
                                        +ra l+++ +li DEa  + dt++ +a+
  CTQ27329.1 469 gldtiigengvmlsggqrqriaiARALLRNSPILILDEATSAlDTESERAI 519
                 888888888888888888888886677777788888888766444433333 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.7e-05     0.065      30      51 ..     366     387 ..     356     393 .. 0.88
   2 ?   -2.6   0.0       4.6   3.4e+03     146     175 ..     502     526 ..     486     537 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.7e-05
      AAA_25  30 lpagelallaGapgtGKttlal 51 
                 +p+g++++l+G++g+GK+t+a+
  CTQ27329.1 366 IPEGKTVALVGRSGSGKSTIAS 387
                 8*******************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.6
      AAA_25 146 vviDplsralggdensnsdvgalvealeri 175
                 +++D  ++al+ +++  ++++a+++   ++
  CTQ27329.1 502 LILDEATSALDTESE--RAIQAALD---EL 526
                 555555555544333..33333333...33 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   9.8e-05     0.073       1      70 [.     372     471 ..     372     555 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.8e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf................................gvnlrdvakenglllevdpealdeskrldedkldklldaleen 67 
                 ++l G +G+GK+t+a  + +   +                                +   +d++++n  +   +++  +++++++  ++++++d +++ 
  CTQ27329.1 372 VALVGRSGSGKSTIASLITRF--YdvddgqilldghdlreyklsslrdqvalvsqnVHLFNDTVANNIAYARTEEY--SREQIEEAARMAYAMDFINKM 466
                 6899**************443..23366666667677777788889999999999888899999998888888888..999999999999999999998 PP

      AAA_18  68 ss..a 70 
                 ++  +
  CTQ27329.1 467 DNglD 471
                 76551 PP

>> ABC_membrane_2  ABC transporter transmembrane region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   3.6   2.6e-05      0.02      61     253 ..      76     260 ..      25     276 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.6e-05
  ABC_membrane_2  61 allavpasfvnsalkYltqkLalafRkrLtkhllseYlknrtyYkvsnlderidnpDqritqDvekFtsslssLlsglvkpildvilftfiLwsl 155
                     +l  + + +    +++++ k+ +++R+rL  h++++     ++++ ++ ++ +     rit D e+ +ss+ss l ++v+   ++i   + ++ +
      CTQ27329.1  76 VLRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGM---PVAFFDKQSTGTLL----SRITYDSEQVASSSSSALITVVREGASIIGLFVMMFYY 163
                     223333333344567777777778888888887776...56899988888854....69**********88888888888888888877778888 PP

  ABC_membrane_2 156 sgtlgllllllyvllatvilriigpplgklvaeeeklegefRylhsrlitnaEeIAFyrGeevEkkqlqrrfkslidnlrrilsrrlrlgiieaf 250
                     s +l+l +l++ + + +v +r++++++ +++ + ++  g+  +   ++ +   e+ +++G+evE k+ ++  +++  +  +++s++ + + i ++
      CTQ27329.1 164 SWQLSL-ILIVLAPIVSVAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLMFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 257
                     877777.8999999999***********************************************9887777777766666666666666666555 PP

  ABC_membrane_2 251 vlk 253
                     +++
      CTQ27329.1 258 IAS 260
                     533 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.13      21      42 ..     370     391 ..     359     399 .. 0.84
   2 ?   -1.9   0.0         2   1.5e+03      95     175 ..     490     573 ..     479     579 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
                 EEEEEEESTTSSHHHHHHHHCC CS
      NB-ARC  21 lvvalvGmgGvGKttlakqiln 42 
                   valvG+ G+GK+t+a+ i +
  CTQ27329.1 370 KTVALVGRSGSGKSTIASLITR 391
                 479**************98876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
                 HHHHHCCCTTEEEEEEEE-SHHH...H.....HHHH.CHTTSEEEEEESBCCCCCCS-S-EEEEEESS--HHHHHHHHHHCCTS- CS
      NB-ARC  95 klvrlLltkrfllvlDDVweeed...wdkigvvlpa.renrlrvllTTRdeevanavsatsekievelLekdeawellenkvfek 175
                  + r+Ll+   +l+lD      d    ++i+++l + ++nr + ++  R   + +++ +   +   ++ e     +lle+k++ +
  CTQ27329.1 490 AIARALLRNSPILILDEATSALDtesERAIQAALDElQKNRTSLVIAHRLSTI-EQADEIVVVEDGRIVERGTHHDLLEHKGVYA 573
                 57888999999999998654433222566777776546777777777777777.4444446666666777777777777666655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00049      0.36       2      98 ..     373     528 ..     372     552 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00049
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS..................................................... CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsellsk..................................................... 37 
                  l+G  G GK+++a+ + +            g ++ e ++s+l+++                                                     
  CTQ27329.1 373 ALVGRSGSGKSTIASLITRFYdvddgqilldGHDLREYKLSSLRDQvalvsqnvhlfndtvanniayarteeysreqieeaarmayamdfinkmdngld 471
                 699***************997333333333335577888888886689999999999999999999999999999999999999999999999999999 PP

                 .......STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA  38 .......yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                        ++  + ++ r  +++a   +   il++DE+ +   ++       +er   ++ ++ld+++k
  CTQ27329.1 472 tiigengVMLSGGQRQRIAIARALLRN-SPILILDEATSALDTE-------SER---AIQAALDELQK 528
                 988888766666666666666654444.6999999999999888.......333...33333444444 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0019       1.4       3      26 ..     373     397 ..     372     418 .. 0.77
   2 ?    2.6   0.1      0.13        96     237     289 ..     481     530 ..     461     536 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0019
      AAA_21   3 vliGpNgsGKSnLLdaldllarl.d 26 
                 +l+G+ gsGKS++  ++  + ++ d
  CTQ27329.1 373 ALVGRSGSGKSTIASLITRFYDVdD 397
                 79**************998877632 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.13
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrng 289
                 lS G+++ +a++ allr     ++l++DE  + L+ +  r +   l+el++n+
  CTQ27329.1 481 LSGGQRQRIAIARALLRNS---PILILDEATSALDTESERAIQAALDELQKNR 530
                 5999999999999999988...*******999999877776666666665555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00054      0.41       2      21 ..     372     391 ..     371     473 .. 0.89
   2 ?   -2.6   0.0       7.8   5.8e+03      66      84 ..     535     553 ..     487     569 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00054
                 EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg 21 
                 va+vGr+ +GKSt+ + +t+
  CTQ27329.1 372 VALVGRSGSGKSTIASLITR 391
                 9*************998886 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.8
                 HHHHHHHHHCTSEEEEEEE CS
    MMR_HSR1  66 lgkaflaleeadlillvvd 84 
                 +++++  +e+ad i++v d
  CTQ27329.1 535 IAHRLSTIEQADEIVVVED 553
                 3333333444666666655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00087      0.65      12      40 ..     361     390 ..     354     392 .. 0.78
   2 ?   -0.8   0.1       2.5   1.9e+03     153     169 ..     467     518 ..     405     547 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00087
      AAA_23  12 dqeidF.skgltlItGpNGaGKTTildAik 40 
                 + ++d  + + ++++G  G+GK+Ti   i+
  CTQ27329.1 361 NINLDIpEGKTVALVGRSGSGKSTIASLIT 390
                 4444557778899************87775 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.5
      AAA_23 153 e...................................rleelekeleeledek 169
                 +                                    l+e++ +l+++++++
  CTQ27329.1 467 DngldtiigengvmlsggqrqriaiarallrnspilILDEATSALDTESERA 518
                 0333333333344444444443444444444444445555555555554444 PP

>> Noelin-1  Neurogenesis glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1       1.2   9.2e+02      41      69 ..     182     211 ..     177     241 .. 0.62
   2 ?    8.4   0.1    0.0027         2      34      81 ..     405     452 ..     402     471 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.2
    Noelin-1  41 lrqllekvqnlsqsie.vldlRtsrdlqyv 69 
                 +r ++++ +n+s++++  + + t+++ q++
  CTQ27329.1 182 IRVVSKRFRNISKNMQnTMGQVTTSAEQML 211
                 555666666666666523444455444444 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0027
    Noelin-1  34 rDarsrqlrqllekvqnlsqsievldlRtsrdlqyvrktetllktles 81 
                 +D r+ +l +l ++v+ +sq++++++   ++++ y r+ e   +++e+
  CTQ27329.1 405 HDLREYKLSSLRDQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE 452
                 6999******************************99998876666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1126  (0.0628033); expected 358.6 (0.02)
Passed bias filter:                      687  (0.0383178); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 3824.18
//
Query:       CTQ27330.1  [L=326]
Description: lipid A 4'kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.7e-113  378.4   0.1   3.3e-113  378.1   0.1    1.0  1  LpxK            Tetraacyldisaccharide-1-P 4'-kinase
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.032   14.1   0.0    1.7  1  AAA_26          AAA domain
      0.012   15.5   0.0      0.084   12.8   0.0    2.3  3  MobB            Molybdopterin guanine dinucleotide synthesis 
       0.05   13.6   0.3       0.16   12.0   0.3    1.9  1  Glyco_transf_4  Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> LpxK  Tetraacyldisaccharide-1-P 4'-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.1   0.1  7.3e-117  3.3e-113       2     324 ..      13     318 ..      12     321 .. 0.95

  Alignments for each domain:
  == domain 1  score: 378.1 bits;  conditional E-value: 7.3e-117
                 GGGGHHHHHHHHHHHHHHHHHHHTTSS--B--SS-EEEEEESBSS-HSHHHHHHHHHHHTTTS..-EEEEE--TSSSS-S.EEEEEETT-HHHH-HHHH CS
        LpxK   2 allLlplsllyglvvalrralyragllkserlpvpVivVGNitvGGtGKTPlvialvkllqarglkvgvlSRGYggkskgapvlvsaessaaevGDEpl 100
                  +lLlpls+lyglv+ + r  y+ g+ k++r+pvpV+vVGN+t+GG+GKTP+vi+lv++lq+rg++vgv+SRGYggk++++p+++++++s+a +GDEp+
  CTQ27330.1  13 WRLLLPLSWLYGLVSGVIRLSYQLGWQKAWRAPVPVVVVGNLTAGGNGKTPVVIWLVEQLQQRGIRVGVVSRGYGGKADRYPLVLDDRTSTALAGDEPV 111
                 579************************************************************************************************ PP

                 HHHHHSTSEEEEESSHHHHHHHHHHHC--SEEEEET-SS-TTB--SEEEEEE..EHHHHC--BTTTSSBSS-GGGGGG-SEEEE..........-TTTS CS
        LpxK 101 llarrtgvpvvVgsdRvaaarallakaeldviilDDGlQhyaLardleivvvdaergfgngrllPaGpLREplsrlkradlvilngakaeeeeaekaee 199
                 l+++rtg+pv+V++ R +a++all++++l++i++DDGlQhy+Lard eivv+d+ r+fgng++lPaGp+RE++srl+++d+vi+ng+ a+  e+     
  CTQ27330.1 112 LIHQRTGAPVAVAPLRSDAVKALLSAHDLQMIVTDDGLQHYKLARDREIVVIDGVRRFGNGWWLPAGPMRERASRLQSVDAVIVNGGVARPGEI----- 205
                 ***************************************************************************************9999988..... PP

                 SSS-EEEEEEEE.EETTS-EE-GGGGTTS-E.EEEESSTTHHHHHHHHHHHT--EEEEEEE-TT---TT........----TT-EEEE-HHHHTTSTT. CS
        LpxK 200 ksipvlrmrlepkklallaaaeeealagkkv.lavaGignPerFfktLealglevvetlafpDHhaftaedleeleeeakelgallvtTeKDavklaal 297
                        mrl+p+ +++l ++e+++++ ++  +a+aGig+P rFf+tLe++g++ v+t a++DH+a +++d+++l   a++   +l++TeKDavk++++
  CTQ27330.1 206 ------PMRLRPGMAVNLLTGERRDVSTFTNvVAMAGIGHPPRFFATLESCGAQPVKTVALADHQALSQADVAALVT-ADQ---TLLMTEKDAVKCRDF 294
                 ......9********99999999997666544*******************************************99.444...59************* PP

                 .......EEEEEEEEEEHHHHHHHHHG CS
        LpxK 298 akenklelwvlpveaeleealeeallk 324
                 a++n   +w+lpv+a + ++ +++ll+
  CTQ27330.1 295 AAAN---WWYLPVDAIMADERAQRLLA 318
                 9999...*********97777777765 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   7.1e-06     0.032      11     111 ..      58     170 ..      48     174 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.1e-06
      AAA_26  11 gvGKTvvslgLvralkrkgvkvgyfKPiqtgieede....dselikellgldq...tyelpeplalsaplspelaarqegedidlekiv.......kel 95 
                 g GKT v  +Lv+ l+++g++vg++     g  + +    d+++ + l+g +    +     p+a++ pl + + +++   + dl+ iv       ++l
  CTQ27330.1  58 GNGKTPVVIWLVEQLQQRGIRVGVVSRGYGGKADRYplvlDDRTSTALAGDEPvliHQRTGAPVAVA-PLRSDAVKALLS-AHDLQMIVtddglqhYKL 154
                 67*********************98665555554445665555555555555422122344555554.444433333332.44555555566667889* PP

      AAA_26  96 ekdadivvVEGagglg 111
                 + d +ivv++G+   g
  CTQ27330.1 155 ARDREIVVIDGVRRFG 170
                 ***********97765 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.9e-05     0.084       7      34 ..      56      83 ..      49     144 .. 0.89
   2 ?   -0.8   0.0      0.29   1.3e+03      82      98 ..     181     197 ..     176     202 .. 0.86
   3 ?   -2.9   0.0       1.3     6e+03      60      78 ..     272     290 ..     263     309 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.9e-05
        MobB  7 ksgsGKTtLleklipelkarglrvgtiK 34
                  g GKT  +  l+++l++rg+rvg++ 
  CTQ27330.1 56 AGGNGKTPVVIWLVEQLQQRGIRVGVVS 83
                5689*********************995 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.29
        MobB  82 eellarlsevDlvlvEG 98 
                 +e ++rl++vD v+v G
  CTQ27330.1 181 RERASRLQSVDAVIVNG 197
                 677899999******98 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.3
        MobB  60 vlvaskerlalikeleeae 78 
                  ++++ +++ l++e ++ +
  CTQ27330.1 272 AALVTADQTLLMTEKDAVK 290
                 5566666666777654422 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   3.6e-05      0.16       7      76 ..      64     143 ..      58     201 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.6e-05
  Glyco_transf_4   7 hvleLaraLarrGheVtvvtpgddgpleeev..........elvvrvprvplpllkrllrslaflrrlrrllkrekpDvv 76 
                     +v  L+++L++rG++V vv++g++g++++ +            + +++ +  +  ++    +  + ++++ll +++   +
      CTQ27330.1  64 VVIWLVEQLQQRGIRVGVVSRGYGGKADRYPlvlddrtstaLAGDEPVLIHQRTGAPVAVAPLRSDAVKALLSAHDLQMI 143
                     667799*********************99987777766655333333333333333334444444455555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2424.96
//
Query:       CTQ27331.1  [L=409]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-75  254.5  10.0    2.1e-75  254.3  10.0    1.0  1  HTH_42    Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> HTH_42  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.3  10.0   1.1e-79   2.1e-75       1     328 []      38     381 ..      38     381 .. 0.93

  Alignments for each domain:
  == domain 1  score: 254.3 bits;  conditional E-value: 1.1e-79
      HTH_42   1 verlgavQadp....arahylvLwsRlggydpedleraladrqlveywamratlhlvpaedlpllrpamapalaaelarakgldareaaalaaavlerl 95 
                 ++++ ++Q+d+    ar++ylvL+sRlg y   +l++ l++++l+eywa++a+  ++p+ d++l+r++m+   + ++++++++  +e+a  +a++++++
  CTQ27331.1  38 IQQMSLLQIDTinvvARSPYLVLFSRLGSYPQHWLDESLRNGELMEYWAHEAC--FLPRSDFALVRHRMLNPDNMGWKYHRAW-MEEHAGSIAELVAHI 133
                 57899************************************************..*******************997776555.5566666888***** PP

      HTH_42  96 aaegpltarelgealarr.gwwgwkkpgkaskralellrlegelvvarrergfekvydlaervlPrav..rs...eaealreLvrrylrayGpatvadl 188
                    gp+ ++++++  + + gww wk    ++kr le l+++ge++v++r+ +f++vydl++rv+P++   r+   +++a + ++r  +r++G+  +++l
  CTQ27331.1 134 GQNGPVRSADFTHPRKGAsGWWEWK----PHKRHLEGLFTAGEVMVVERR-NFHRVYDLTRRVMPDWDdeRDalsREDAEAIMLRNSARSLGIFRAQWL 227
                 **************99999999***....*******************66.****************9752277799********************** PP

      HTH_42 189 aawsgltkarlraalaelvaegelvevrvergrerlfdlpedlaelpgadtp...v...rlLppfDnlllgrarrerlfddfdyrkevytpaakrr... 278
                 a++++l++  l  +la+ ++eg +v+v ve+  e ++ ++ +la l  a+     +   ++L+pfD+++++r+r e+lf  f+yr e+ytpa kr+   
  CTQ27331.1 228 ADYYRLRQPALPGLLAAWQEEGLVVPVNVEALGE-MWLHHKALAQLETAPGGkltAshsAVLSPFDPVVWDRKRAEQLF-NFSYRLECYTPAPKRQygy 324
                 ******************************6557.9***99997777776664432789********************.******************* PP

      HTH_42 279 .vlpvLvdGrvvGrwdlkadretgvleveaflllea.......eraaleaelerlarf 328
                  vlp+L++G++vGr+d k +r++ +le+ a l+le+       +++ l+++++++a +
  CTQ27331.1 325 fVLPLLHQGKLVGRMDSKIHRKSRELEIFA-LWLEEgvkitrgLEQGLRRAINDFAHW 381
                 *****************************9.9************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.31s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2733.57
//
Query:       CTQ27332.1  [L=60]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-08   34.6   0.3    3.9e-08   33.8   0.3    1.5  1  Trm112p   Trm112p-like protein
     0.0073   16.0   0.0      0.012   15.3   0.0    1.3  1  zf-RRN7   Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.017   15.3   0.0    1.1  1  DUF2318   Predicted membrane protein (DUF2318)
      0.053   13.3   0.4      0.066   13.0   0.4    1.1  1  PADR1     PADR1 (NUC008) domain


Domain annotation for each model (and alignments):
>> Trm112p  Trm112p-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.3   8.7e-12   3.9e-08       1      68 []       2      41 ..       2      41 .. 0.97

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 8.7e-12
                BTGGCCC-B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEECCCCEEEETTTTEEEEEETT CS
     Trm112p  1 kllllniLaCpackgpLdwealvevaalglnelpkekpedyellleldieegeLvCpncgraYpIkdG 68
                +++ll+i+aCp+c g+L                        +    ++++++eL+C+ + +a+p +dG
  CTQ27332.1  2 DHRLLEIIACPVCNGKL------------------------Y----YSQDKQELICKLDSLAFPLRDG 41
                689**************........................8....9********************9 PP

>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.6e-06     0.012       6      19 ..      10      23 ..       8      23 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.6e-06
     zf-RRN7  6 pCgvCgcrsftldd 19
                +C+vC+++++++ d
  CTQ27332.1 10 ACPVCNGKLYYSQD 23
                8**********955 PP

>> DUF2318  Predicted membrane protein (DUF2318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   3.7e-06     0.017      36      56 ..      10      31 ..       3      40 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.7e-06
     DUF2318 36 aCevCekkgYv.qegeelvCkn 56
                aC vC++k Y+ q+++el+Ck 
  CTQ27332.1 10 ACPVCNGKLYYsQDKQELICKL 31
                8****88888879999****96 PP

>> PADR1  PADR1 (NUC008) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   1.5e-05     0.066      14      33 ..       9      29 ..       7      33 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
       PADR1 14 ekCpeCkegqlvfdss..gYkC 33
                  Cp C+ g+l+++++  +  C
  CTQ27332.1  9 IACPVCN-GKLYYSQDkqELIC 29
                57*****.******98766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 430.88
//
Query:       CTQ27333.1  [L=248]
Description: 3-deoxy-manno-octulosonate cytidylyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-72  243.5   0.0    2.6e-72  243.3   0.0    1.0  1  CTP_transf_3  Cytidylyltransferase
    2.6e-14   53.9   0.1    3.1e-14   53.7   0.1    1.2  1  NTP_transf_3  MobA-like NTP transferase domain
     0.0017   18.2   0.1     0.0042   16.9   0.2    1.6  2  DUF2064       Uncharacterized protein conserved in bacteria (


Domain annotation for each model (and alignments):
>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.3   0.0   4.4e-76   2.6e-72       1     221 []       4     221 ..       4     221 .. 0.98

  Alignments for each domain:
  == domain 1  score: 243.3 bits;  conditional E-value: 4.4e-76
                   EEEEEE-SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES-HHHHHHHHHTTSEEEE--TTCSSHHHHHHHHHHHHTTT.TTSEEEEE- CS
  CTP_transf_3   1 iaIipARsgSkRlpgKnlldlggkpliayvleaalkskafekvivaTDseeiknvakefgasvlvtrsslesdterflevvkaflmseneeiivnlq 97 
                   ++IipAR++S+RlpgK+l+d++gkp+i +vle+a++s+a +++ivaTD+e+++ +++++g++v++tr +++s+ter++evv+++++s +++iivn+q
    CTQ27333.1   4 VVIIPARFASTRLPGKPLQDINGKPMIVHVLERARESGA-DRIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFS-DDTIIVNIQ 98 
                   69*************************************.***********************************************.********* PP

                   TT-TT--HHHHHHHHHHHHHSTTSSEEEEEEETTSHHHHTSTTSTEEEETTTSBEEEEESSESSEEHHHHHCTS...TTTSEEEEEEEEEEHHHHHH CS
  CTP_transf_3  98 GdnPllqeevikkaietlkenqedylstlvkkvgkeeevlnandlkvllddagkalyfeesvipyireeplels...rrlylshagiytfrkeqplk 191
                   Gd+P++++  +++++e+l+ + +  ++tl+++++++ee++n+n++kv+ d +g+alyf++++ip++r+++++ +    +  l+h+giy++r+  +++
    CTQ27333.1  99 GDEPMIPPAIVRQVAENLAASSS-GMATLAVPIHDAEEAFNPNAVKVVMDAKGYALYFSRATIPWDRDRFAQSRetiGDSLLRHIGIYGYRAG-FIR 193
                   *********************65.************************************************77899999************9.*** PP

                   HHHHSHHHHHSHHHHHT-TTHHHHHTT-EE CS
  CTP_transf_3 192 elvidtptseilekiekleqlrvllegkki 221
                   ++v++ p++  le+ie+leqlrvl++g+ki
    CTQ27333.1 194 RYVSWAPSP--LEQIEMLEQLRVLWYGEKI 221
                   *********..****************998 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.1   5.1e-18   3.1e-14      15     133 ..      18     155 ..       9     226 .. 0.82

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 5.1e-18
                   THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHCHHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH...SSSCEEEEETT-TT--HHHHHHHHH CS
  NTP_transf_3  15 dKallplggkpllervldalraagvdevvvvggdeevlaalarlgvrvvededpgkgplaslaaalraaa..dadavlvlacDmPlltpelverlla 109
                    K+l +++gkp++ +vl+++r++g+d+++v++++e+v++a++  g +v   +  ++   + la  ++++a  d++ ++ + +D P+++p++v+++++
    CTQ27333.1  18 GKPLQDINGKPMIVHVLERARESGADRIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAfsDDTIIVNIQGDEPMIPPAIVRQVAE 114
                   5********************************************999999999999999999999998875777788899**************** PP

                   CHHHHT...SSEEEEESSSEE..............EECCEE CS
  NTP_transf_3 110 aaaasg...advvvptyeger..............ghpllf 133
                   ++aas+   a  +vp ++ e+              g+ l+f
    CTQ27333.1 115 NLAASSsgmATLAVPIHDAEEafnpnavkvvmdakGYALYF 155
                   **988845556788888877766666666666666444444 PP

>> DUF2064  Uncharacterized protein conserved in bacteria (DUF2064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   6.9e-07    0.0042       7      89 ..      38     119 ..      32     133 .. 0.78
   2 ?   -2.5   0.0      0.72   4.3e+03      12      50 ..     141     179 ..     135     182 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.9e-07
                 TTSSSEEEEEE----TTHHHHHHHH-TTSEEEE--SSSHHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHHHHTTT- CS
     DUF2064   7 aadaaevvlaldgaldkalaeqlalakglevlpQqggdlgeRlarafdrafeageepvlliGsDcpqltaalleqAfeaLeea 89 
                 +++ a++ ++ +++ d a a  +a+++++ +++  +++  eRla+++++ + ++ + ++ i  D p++++a+++q +e+L+++
  CTQ27333.1  38 RESGADRIIVATDHEDVARAV-EAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTIIVNIQGDEPMIPPAIVRQVAENLAAS 119
                 444455555555544444444.388888888888888999**********8888889999********************986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.72
                 EEEEEE----TTHHHHHHHH-TTSEEEE--SSSHHHHHH CS
     DUF2064  12 evvlaldgaldkalaeqlalakglevlpQqggdlgeRla 50 
                 +v++++d+++ + +++++  + +   ++Q+ + +g+ l 
  CTQ27333.1 141 AVKVVMDAKGYALYFSRATIPWDRDRFAQSRETIGDSLL 179
                 577888888888888777777777778888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1860.37
//
Query:       CTQ27334.1  [L=297]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-09   38.5   2.9    1.6e-09   38.1   2.9    1.2  1  APH              Phosphotransferase enzyme family
     0.0017   17.6   0.3     0.0024   17.2   0.3    1.3  1  Fructosamin_kin  Fructosamine kinase
  ------ inclusion threshold ------
      0.025   14.5   0.0      0.038   13.9   0.0    1.3  1  STAT_alpha       STAT protein, all-alpha domain


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   2.9   2.6e-13   1.6e-09      47     218 ..      64     242 ..      44     276 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 2.6e-13
                 HHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SS.HHHHHHHHHHHHHHHHHHCCHHCH..-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTC CS
         APH  47 Lakagv.pvPevlagdtddeeigllfalieyvpgrsllr.klsaaqlpellealgeflaalhqvd.paalpladflaqdlellrqlesatarllasell 142
                 La++g  + P+v+   t +e+ g  ++l+e++ g +++  + ++a  ++l e+++e l a h+ d +   ++ d +  +l++++++ +    +  ++l 
  CTQ27334.1  64 LARNGTvRMPVVYGVMTHEEHPGPDVLLLERLRGVPVEApTRTPARWEQLQEQIVEGLLAWHRQDsGGCVGMVDNTQENLWPNWYRQRVEILWSTLNLY 162
                 444444599*****99***********************98889999999999999999******************************9988777777 PP

                 C......HHHHHHHHHHHHHHHH--S.SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCHHHCSCHCCC CS
         APH 143 d......lleeleeqvlaalaallpg.elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavllrswtseldp 218
                 +         +l  + +++l++l +  ++ +vl+Hg + ++ +l dp+ +++ +++  +++ ++p+ y+l  l+   +  + +
  CTQ27334.1 163 QdtgltmQDKRLLFRSRECLPELFRDfNDNAVLVHGNFTLRSMLKDPRSDQLLAMVGPGMMLWAPREYELFRLA-EGG--QAE 242
                 75777665566666688888888888********************************************9999.433..333 PP

>> Fructosamin_kin  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   3.9e-07    0.0024     137     262 ..     137     269 ..      55     292 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.9e-07
  Fructosamin_kin 137 pNewqssWaeFfaeqR..lgv.qlelakekglefakieelv...ervaellskhqpkpsllHGdLWsgNaaltkdge..pvifdPa.ayygdrE 221
                       N+ ++ W +++++ R  +++  l+l ++ gl++++ + l    e + el+++ + +++l+HG++    +  +   +    ++ P  + ++ rE
       CTQ27334.1 137 DNTQENLWPNWYRQ-RveILWsTLNLYQDTGLTMQDKRLLFrsrECLPELFRDFNDNAVLVHGNFTLRSMLKDPRSDqlLAMVGPGmMLWAPRE 229
                      36666778887865.41233336999******9999887762225678999**************999988877644235567886268***** PP

  Fructosamin_kin 222 vdlamtelfggfpsefyegYqsivpldegyeeRkelYqLYh 262
                      ++l  +   gg  +++   Y +  p++e +  R+ lY L+ 
       CTQ27334.1 230 YELFRL-AEGGQAEQLLWRYLQQAPVSEAFVWRRWLYLLWD 269
                      **9544.6799999***********************9975 PP

>> STAT_alpha  STAT protein, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.4e-06     0.038      68     138 ..      92     161 ..      72     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.4e-06
  STAT_alpha  68 LdqkRkelvdklkellnlleslqeklldeeLieWKrrQqlagiGapfnesLDqlqkwfealaeliwqlrqq 138
                 L + R   v++  ++  + e+lqe+++ e L  W r+    + G+ +n++ +   +w  +  e++w + ++
  CTQ27334.1  92 LERLRGVPVEAPTRTPARWEQLQEQIV-EGLLAWHRQDSGGCVGMVDNTQENLWPNWYRQRVEILWSTLNL 161
                 67778888889999999**********.********************99999999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2293.15
//
Query:       CTQ27335.1  [L=259]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-27   95.6   0.0    2.8e-27   95.3   0.0    1.1  1  DUF218    DUF218 domain


Domain annotation for each model (and alignments):
>> DUF218  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.0   1.6e-31   2.8e-27       2     116 ..      81     214 ..      80     243 .. 0.80

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 1.6e-31
      DUF218   2 aivVLG.................aalpllaeRldeaaelyrag...kiivsGg.gadedvseaeamaeylrelgvpeeailledrsrnTeenarfskel 79 
                 ++vVLG                 ++lp    Rl+e+++l++a+   k+i++G   ++++vs aea a+++++lgvp+++i++ dr ++Tee+a+++k+ 
  CTQ27335.1  81 YVVVLGggytwnpewapssnlinNSLP----RLTEGIRLWQANpgsKMIFTGAaAKTNPVSTAEAGARVAESLGVPRSDIIVLDRPKDTEEEALAVKRA 175
                 89***9788888777776555444446....************7777******86679******************99********************* PP

      DUF218  80 lkersillVTsafHmpRalllfrkag.....aptpsaealsa 116
                 ++++++llVTsa+H+pRa+ +fr+ag     ap+   ++l+ 
  CTQ27335.1 176 IGDAPFLLVTSASHLPRAMIFFRHAGldplpAPA---NQLAV 214
                 *6569********************987744322...22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2071.79
//
Query:       CTQ27336.1  [L=266]
Description: putative AdoMet-dependent methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-16   60.6   0.0    2.3e-16   60.0   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
    3.2e-16   59.8   0.2    5.6e-16   59.0   0.2    1.4  1  Methyltransf_25  Methyltransferase domain
    4.1e-15   56.0   0.0    6.8e-15   55.3   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    9.5e-15   55.0   0.1    1.6e-14   54.3   0.1    1.4  1  Methyltransf_11  Methyltransferase domain
    3.5e-13   50.1   0.1    6.2e-13   49.3   0.1    1.4  1  Methyltransf_12  Methyltransferase domain
    9.9e-07   28.3   0.0    1.3e-06   28.0   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      4e-05   23.2   0.0    5.7e-05   22.7   0.0    1.2  1  MTS              Methyltransferase small domain
    0.00013   22.9   0.1      0.028   15.4   0.1    2.4  2  Methyltransf_24  Methyltransferase domain
     0.0029   17.0   0.0      0.004   16.5   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
     0.0049   16.5   0.0     0.0074   15.9   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
      0.006   16.0   0.0      0.009   15.4   0.0    1.2  1  TehB             Tellurite resistance protein TehB
  ------ inclusion threshold ------
      0.016   14.3   0.0      0.028   13.5   0.0    1.3  1  DREV             DREV methyltransferase
      0.062   13.2   0.0      0.092   12.6   0.0    1.2  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
       0.13   12.1   0.0        0.3   11.0   0.0    1.6  1  GFRP             GTP cyclohydrolase I feedback regulatory pro
       0.16   11.4   0.0        5.4    6.4   0.0    2.3  2  CheR             CheR methyltransferase, SAM binding domain


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   1.9e-19   2.3e-16       5     130 ..      46     171 ..      44     199 .. 0.77

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 1.9e-19
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkileei 97 
                      lrvlD+G G+G+ +++ a +lg   +v++ D s+e++ +Ar+ a+++g+  n++F q+ ++++ ++le +++Dl+l ++vl  +a+p++il  +
       CTQ27336.1  46 LRVLDAGGGEGQTAIKVA-QLG--HHVTLCDLSAEMVARARQAAADKGVIdNMHFVQCAAQDIAQHLE-SPVDLVLFHAVLEWVAEPQEILHTL 135
                      79****************.665..59**********************988***********887877.89*********************** PP

  Methyltransf_31  98 ervlkpggilliedprllaelpakveeeskay...e 130
                       + l+ gg l +  +++   l +++ + +  y   +
       CTQ27336.1 136 WSTLRAGGGLSLMFYNANGLLMHNMVAGNFDYvqlG 171
                      ********9988777733333344444444333443 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.2   4.7e-19   5.6e-16       1      97 []      48     143 ..      48     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 4.7e-19
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSS.STTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpf.edgsfDlvvssgalhhlsdedlekalkeiar 91 
                      vLd+G G+G++++++a+ +  ++vt +D+s+em+++ar+ a+++g+  n++fvq+ a+d+ +  ++ +Dlv+   +l+++ +++  ++l+ +++
       CTQ27336.1  48 VLDAGGGEGQTAIKVAQLG--HHVTLCDLSAEMVARARQAAADKGVidNMHFVQCAAQDIAQhLESPVDLVLFHAVLEWVAEPQ--EILHTLWS 137
                      9****************95..**************************************98626779******655**998665..9******* PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                       L+ gG
       CTQ27336.1 138 TLRAGG 143
                      ****99 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   5.7e-18   6.8e-15      13     164 ..      34     204 ..      22     205 .. 0.81

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 5.7e-18
  Methyltransf_23  13 lerllpk.lraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.......kakkaqkdqfdeqeaae.pqgkfdlIvlrevlehvpd 97 
                      le ll+   + + rvLd G G+G ++   ++ g++vt+ Dls e+v++a+        +++++++q  +q++a+  +   dl+    vle+v  
       CTQ27336.1  34 LEPLLAQlGPGPLRVLDAGGGEGQTAIKVAQLGHHVTLCDLSAEMVARARqaaadkgVIDNMHFVQCAAQDIAQhLESPVDLVLFHAVLEWVAE 127
                      4444444146777****************************************9999999999998888888774666**************** PP

  Methyltransf_23  98 ppellrqiatllkpgGylllseplasl.....kedrllldwlylvpagrhi.....sffsarslkelleeaGlevve 164
                      p e l+++++ l+ gG l l+ ++a+        +  ++++++  p+ +++     +    +++ ++lee G+++v+
       CTQ27336.1 128 PQEILHTLWSTLRAGGGLSLMFYNANGllmhnMVAGNFDYVQLGMPKKKKRtlspdYPREPQQVYHWLEEIGWQIVS 204
                      ************************99977754355556666666555533333576566778899999999999987 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.1   1.4e-17   1.6e-14       1      94 [.      49     145 ..      49     147 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1.4e-17
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl..kvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkpg 91 
                      Ld+G G G+ a ++a+ g++v+ +Dls+em+++a+++a ++g+  ++ fv++ a+++ +  ++ +Dlv+ + vl++v++p+++l  ++  L+ g
       CTQ27336.1  49 LDAGGGEGQTAIKVAQLGHHVTLCDLSAEMVARARQAAADKGVidNMHFVQCAAQDIaQHLESPVDLVLFHAVLEWVAEPQEILHTLWSTLRAG 142
                      8********************************************999********9789999******************************* PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G l
       CTQ27336.1 143 GGL 145
                      966 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.1   5.1e-16   6.2e-13       1      99 []      49     145 ..      49     145 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 5.1e-16
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg..ssfDlvvasnvlhhlkdirevldnirkl 92 
                      L+ G+G G+++  +++   + ++t +D+s++++++a++  a+++    +n+++ ++ + d ++   s +Dlv+ + vl+++++++e+l+ + + 
       CTQ27336.1  49 LDAGGGEGQTAIKVAQL--GHHVTLCDLSAEMVARARQAAADKG--VIDNMHFVQCAAQDIAQHleSPVDLVLFHAVLEWVAEPQEILHTLWST 138
                      89***************..**************66666666555..455555555554444444449*************************** PP

  Methyltransf_12  93 LkpgGrl 99 
                      L+ gG l
       CTQ27336.1 139 LRAGGGL 145
                      ****965 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.1e-09   1.3e-06      47     152 ..      44     148 ..       8     186 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.1e-09
                      -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-TTS-.T-EEEEEEES-GGG-S-HHHHHHH CS
  Ubie_methyltran  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLpfed.dsfDvvtvsfGlrnvtDklkaLke 138
                       + +vlD  gG g  a+k+++      +v+++D++++m+  +++ + ++g+i n++f+q  a+++  +     D+v     l  v++ ++ L++
       CTQ27336.1  44 GPLRVLDAGGGEGQTAIKVAQLG---HHVTLCDLSAEMVARARQAAADKGVIdNMHFVQCAAQDIAQHLeSPVDLVLFHAVLEWVAEPQEILHT 134
                      4569*************998754...4799*********************999**********998762679******9************** PP

                      HHHHEEEEEEEEEE CS
  Ubie_methyltran 139 ayrvlkpGGrlvvl 152
                      ++  l++GG l  +
       CTQ27336.1 135 LWSTLRAGGGLSLM 148
                      *********98765 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   4.7e-08   5.7e-05      34     141 ..      47     151 ..      29     177 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.7e-08
                 EEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.....EEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHHHHHHHHHH CS
         MTS  34 kvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.....vevvasdvleeveekkfdlivsNPPfhagkatelavaeeliaeAke 127
                 +vlD G G G  ++++a+   +  vtl+d +a+ ++ a++ ++++++      v++ a+d+ +++e   +dl++    fha  +   a  +e++++  +
  CTQ27336.1  47 RVLDAGGGEGQTAIKVAQLGHH--VTLCDLSAEMVARARQAAADKGVIdnmhfVQCAAQDIAQHLE-SPVDLVL----FHAVLE-WVAEPQEILHTLWS 137
                 69****************9888..9****************99998766777899999*******9.9*****9....788887.55556788888888 PP

                 HEEEEEEEEEEEET CS
         MTS 128 aLkegGeLliVanr 141
                  L+ gG L +   +
  CTQ27336.1 138 TLRAGGGLSLMFYN 151
                 88888887766544 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   2.3e-05     0.028      24      99 ..      67     143 ..      27     148 .. 0.83
   2 ?    5.4   0.0     0.031        37      75     106 .]     182     214 ..     157     214 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.3e-05
  Methyltransf_24  24 grlvavdhdpg.aeeaaalareaglddrvrlikadseealaslaagsiDllfiDgghaa.eavledleallprlapgg 99 
                       +++ +d  ++  ++a++ a+++g+ d++++++  +++ +++l+ +++Dl+++ +  +  ++ +e l++l+ +l+ gg
       CTQ27336.1  67 HHVTLCDLSAEmVARARQAAADKGVIDNMHFVQCAAQDIAQHLE-SPVDLVLFHAVLEWvAEPQEILHTLWSTLRAGG 143
                      47888888876656678888889*********************.*****9999887764777888999999999988 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.031
  Methyltransf_24  75 iDgghaaeavledleal.lprlapggvvlfdDi 106
                       D + + ++v++ le + ++++++ gv +f+D+
       CTQ27336.1 182 PDYPREPQQVYHWLEEIgWQIVSKTGVRVFHDY 214
                      577778889999998877**************8 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.4e-06     0.004      59     140 ..      40     121 ..       6     162 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.4e-06
                 T--TT.-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGT CS
        CMAS  59 elkpG.mtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedldekvdrvvsvgafehv 140
                 +l pG  ++Ld G G G+++++ ++  + +v    lS+e  ++a+++ ++ ++ ++ +   +  +d+++++++ v + +f +v
  CTQ27336.1  40 QLGPGpLRVLDAGGGEGQTAIKVAQL-GHHVTLCDLSAEMVARARQAAADKGVIDNMHFVQCAAQDIAQHLESPVDLVLFHAV 121
                 67777348*************98887.*****************************999999999999988888887777776 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.2e-06    0.0074       4      69 ..      48     113 ..      46     121 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.2e-06
  Methyltransf_15   4 ilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklek 69 
                      +lD+ +G G  +i+ a+ +++v   + + e +a a + a   gv d++ +v++  +++ ++l++ +
       CTQ27336.1  48 VLDAGGGEGQTAIKVAQLGHHVTLCDLSAEMVARARQAAADKGVIDNMHFVQCAAQDIAQHLESPV 113
                      899999*9************************************************9999987654 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.5e-06     0.009      31     108 ..      45     125 ..      39     151 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.5e-06
                 S-EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHH.HHHH...TT-TTEEEEE--GGG----S-EEEEEEESSGGGS CS
        TehB  31 pgkvldlgcgqgrnslylsllgydvtawdknensiaflee.ikek...enlknistalydineaklderydfilstvvlmfl 108
                 p +vld g g+g+ ++ ++ lg++vt  d  ++ +a  ++  ++k   +n++ +++a  di + +l+   d++l   vl ++
  CTQ27336.1  45 PLRVLDAGGGEGQTAIKVAQLGHHVTLCDLSAEMVARARQaAADKgviDNMHFVQCAAQDIAQ-HLESPVDLVLFHAVLEWV 125
                 779**************************9999998776515566122455556777888864.688889999888887665 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.3e-05     0.028      95     182 ..      45     143 ..      33     150 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.3e-05
        DREV  95 dkklldlGaGdGeitkrvaptfeevyatelsetmrdrlkkk..kynvl........sale.lqetdvkldlilclnlldrcfdplklledirsalepng 182
                 + ++ld G G+G+ + +va+  ++v   +ls +m  r ++   +  v+        +a +  q+ +   dl+l   +l+   +p ++l+ ++s+l++ g
  CTQ27336.1  45 PLRVLDAGGGEGQTAIKVAQLGHHVTLCDLSAEMVARARQAaaDKGVIdnmhfvqcAAQDiAQHLESPVDLVLFHAVLEWVAEPQEILHTLWSTLRAGG 143
                 579*******************************9887654113334400000011444544555667899999999999999*999999999988754 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.7e-05     0.092      13     100 ..      57     139 ..      48     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.7e-05
                 HHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHHH CS
     3HCDH_N  13 giaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfael 100
                 + a  +a+ g++V+l+d s+e +++a++++++  + ++ + ++ +  ++++++ ++   dl  +     v E v+E  e+ + ++ +l
  CTQ27336.1  57 QTAIKVAQLGHHVTLCDLSAEMVARARQAAAD--KGVIDNMHFVQCAAQDIAQHLESPVDLVLF---HAVLEWVAEPQEILHTLWSTL 139
                 56888999*********************999..777777777777777777777766555544...788888888888888887776 PP

>> GFRP  GTP cyclohydrolase I feedback regulatory protein (GFRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00025       0.3      50      72 ..     186     208 ..     170     212 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
        GFRP  50 dpprvvLnkLekkGykvvamtgv 72 
                 + p++v   Le++G+++v++tgv
  CTQ27336.1 186 REPQQVYHWLEEIGWQIVSKTGV 208
                 6799*****************98 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.068        81      60      87 ..      62      89 ..      26      97 .. 0.68
   2 ?    6.4   0.0    0.0046       5.4     119     172 ..      97     146 ..      89     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.068
                TSSS-EEEEEEESSCHHHHHHHHTEEEC CS
        CheR 60 aaklkvkilAtDidlkvlekAkagvyke 87
                +a+l  +++  D++++++++A+++  ++
  CTQ27336.1 62 VAQLGHHVTLCDLSAEMVARARQAAADK 89
                3334456788899999999999987665 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0046
                 TEEEEE--TTT-SGGG--EEEEEE-SSGGGC-CHHHHHHHHHHHCCEEEEEEEE CS
        CheR 119 lvkFeklnllekksvlgklDvifcrnvliYfdeetqekvlerfaeklkpgglLl 172
                  v+++ +++++  ++++++D+++   vl +  e++  ++l+ ++++l++gg L 
  CTQ27336.1  97 FVQCAAQDIAQ--HLESPVDLVLFHAVLEWVAEPQ--EILHTLWSTLRAGGGLS 146
                 47777777776..9*****************9985..89***********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2146.31
//
Query:       CTQ27337.1  [L=440]
Description: Involved in chromosome partioning, Ca2+ binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-85  282.3   5.1    9.4e-85  282.3   5.1    1.8  2  MukF_M        MukF middle domain
    5.8e-79  263.7   0.5    5.8e-79  263.7   0.5    1.8  2  MukF_C        MukF C-terminal domain
    4.1e-58  194.6   0.3      1e-57  193.3   0.1    1.8  2  KicB          MukF winged-helix domain
  ------ inclusion threshold ------
      0.096   12.7   0.0       0.24   11.5   0.0    1.6  1  Replic_Relax  Replication-relaxation
          4    7.5   6.6        8.9    6.3   2.0    2.6  2  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C


Domain annotation for each model (and alignments):
>> MukF_M  MukF middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.3   5.1   2.6e-88   9.4e-85       1     161 []     121     281 ..     121     281 .. 1.00
   2 ?   -2.8   0.0       1.3   4.6e+03      63      89 ..     299     325 ..     288     339 .. 0.65

  Alignments for each domain:
  == domain 1  score: 282.3 bits;  conditional E-value: 2.6e-88
                 -HHHHHHHHHHHHHHHHHHHHHHHT--SHHHHHHHTHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH CS
      MukF_M   1 sslklsiqlsivadeleraaeaaeeggdekaWrknvfarlkysvaeildridltqrvmdeqqqqvkeeiaellnkdWreaisscekllsetsstlrelq 99 
                 s+l+ls+qlsiva el+raa+aaeeggde +W++nvfa+lkysvaei+d+idltqr+mdeqqq vk++ia+llnkdWr+aissce llsets+tlrelq
  CTQ27337.1 121 STLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVFAPLKYSVAEIFDSIDLTQRIMDEQQQLVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQ 219
                 68************************************************************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      MukF_M 100 dtleaaGdklqaellriqeavlgreelelvdklildlqskldriisWGqqaidlWigydrhv 161
                 dtl+aaGdklqa+llriq+a+++r++l++vd+l++dlqskldri+sWGqqaidlWigydrhv
  CTQ27337.1 220 DTLDAAGDKLQANLLRIQDATMARDDLHFVDRLVFDLQSKLDRIVSWGQQAIDLWIGYDRHV 281
                 *************************************************************8 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHGGGGHHHHHHHHH CS
      MukF_M  63 qqvkeeiaellnkdWreaissceklls 89 
                 q++++ + + +++ W  + ++ ++ll+
  CTQ27337.1 299 QRLRQSVQTYFDEPWALTYANADRLLD 325
                 455666666677777777777777765 PP

>> MukF_C  MukF C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.4   4.9e+03      18      41 ..     184     207 ..     167     237 .. 0.63
   2 !  263.7   0.5   1.6e-82   5.8e-79       1     158 []     283     440 .]     283     440 .] 1.00

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.4
                 HHHHHHHHGGGS-EEEEEE----E CS
      MukF_C  18 rlresikdyfdepwlltvadaerl 41 
                  +++ i +  +++w   ++  e l
  CTQ27337.1 184 LVKDDIAQLLNKDWRAAISSCELL 207
                 345555555566665555555444 PP

  == domain 2  score: 263.7 bits;  conditional E-value: 1.6e-82
                 HHHHHHTTTCTTSHHHHHHHHHHHHGGGS-EEEEEE----EEE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      MukF_C   1 kfirtaidldknrvfsqrlresikdyfdepwlltvadaerlldlrdeelalrdeevtGelPeeleyeeleeieeqlaerieealavykekgkpldlaev 99 
                 kfirtaid+dknrvf+qrlr+s+++yfdepw+lt+a+a+rlld+rdee+alrdeevtGelP++le+ee++ei+eqla+ ie++lavykekg pldl+ v
  CTQ27337.1 283 KFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPADLEFEEFNEIREQLAALIEAQLAVYKEKGIPLDLGLV 381
                 8************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      MukF_C 100 lrdylakyPksqhfdvarllvdqavrlGvaeedlsglqpeWkaindaGakvqahvidky 158
                  r++la+yP+ +hfdvar++vdqav+lGva++d++gl ++W++ind+Gakvqahvidky
  CTQ27337.1 382 AREFLAQYPRGRHFDVARIVVDQAVQLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY 440
                 **********************************************************9 PP

>> KicB  MukF winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.3   0.1   2.8e-61     1e-57       1     115 []       3     117 ..       3     117 .. 0.99
   2 ?   -2.7   0.0       1.9   6.8e+03       4      26 ..     258     279 ..     255     300 .. 0.71

  Alignments for each domain:
  == domain 1  score: 193.3 bits;  conditional E-value: 2.8e-61
                 XXXXHHHHHHHHHHHTT--EEE-HHHHHHHHHHHHHHHT--SSSEEHHHHHHHHHHHHHHTT--STTHHHHHHHHHHHHHHTTSEEEEE-SSSTTSEEE CS
        KicB   1 elsqtipelvsWvkeedlslslpterlafllaiavlneerldeelseaelvdafrlvskafeqseetlavrannaindlvkqrllsrftseltegesiy 99 
                 e+sqt+pelv+W++++d+s+slp++rl+fllaia+ln erl++e+se+elvdafr+vs+afeq++et+++rannaindlv+qrll+rftse+teg++iy
  CTQ27337.1   3 EFSQTVPELVAWARKNDFSISLPVDRLSFLLAIATLNGERLEGEMSEGELVDAFRHVSDAFEQTSETISQRANNAINDLVRQRLLNRFTSEITEGNAIY 101
                 789************************************************************************************************ PP

                 EE-HHHHHHHHHHHS- CS
        KicB 100 rltplgigitdyyirq 115
                 rltplgigitdyyirq
  CTQ27337.1 102 RLTPLGIGITDYYIRQ 117
                 **************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.9
                 XHHHHHHHHHHHTT--EEE-HHH CS
        KicB   4 qtipelvsWvkeedlslslpter 26 
                  +++ +vsW ++  ++l ++ +r
  CTQ27337.1 258 SKLDRIVSWGQQ-AIDLWIGYDR 279
                 568889999765.4666666666 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.6e-05      0.24      22      69 ..      66     111 ..      55     133 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.6e-05
  Replic_Relax  22 shra...tarrrLarLrelgllsrlrkrvggarggsepyvYaLtpkGarll 69 
                   + ++   +a++++++L +++ll+r++ ++++ ++     +Y Ltp+G  + 
    CTQ27337.1  66 TSETisqRANNAINDLVRQRLLNRFTSEITEGNA-----IYRLTPLGIGIT 111
                   4444566799******************666666.....********7655 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2     0.036   1.3e+02      55      96 ..      53      89 ..      34     100 .. 0.51
   2 ?    6.3   2.0    0.0025       8.9      16     102 ..     171     261 ..     163     265 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.036
  Baculo_PEP_C 55 ksllaeldtrldtlltnLtd.alnalqdtlrneLtnlnsiltn 96
                   ++  +++++++++++++++ a na++d +r++L      l+ 
    CTQ27337.1 53 VDAFRHVSDAFEQTSETISQrANNAINDLVRQRL------LNR 89
                  3333444444444444443312334444444443......333 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0025
  Baculo_PEP_C  16 ldLtnvLnairlqnvq..ilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq..dtlrneLtnlnsiltnLlssvt 102
                   +dLt+ + + + q+v+  i+  l+++  a  ++ + l ++ +  l el++ ld++ ++L++ l ++q  +  r +L  ++  + +L+s++ 
    CTQ27337.1 171 IDLTQRIMDEQQQLVKddIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLDAAGDKLQANLLRIQdaTMARDDLHFVDRLVFDLQSKLD 261
                   6777777776666664336555677777777888889999999999*********************77778999****999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3239.88
//
Query:       CTQ27338.1  [L=234]
Description: protein involved in chromosome partitioning [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.1e-126  417.4   0.7     1e-125  417.2   0.7    1.0  1  MukE      MukE-like family
     0.0029   17.4   1.0      0.048   13.4   1.0    2.1  1  DUF4194   Domain of unknown function (DUF4194)
  ------ inclusion threshold ------
      0.011   14.8   0.0      0.013   14.5   0.0    1.1  1  Tfb2      Transcription factor Tfb2


Domain annotation for each model (and alignments):
>> MukE  MukE-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.2   0.7  1.7e-129    1e-125       1     225 [.      10     230 ..      10     234 .] 0.96

  Alignments for each domain:
  == domain 1  score: 417.2 bits;  conditional E-value: 1.7e-129
        MukE   1 lpvklaqaianplfpeldsqlrsGrhisldeldnhaflldfqeeleefyrrynvelirapeGffylrprsttliarsvlseldmlvGkvlcylylsper 99 
                 +pvklaqa+anplfp+lds+lr+Grhi+ldeldnhafl+dfq+ leefy+rynvelirapeGffylrprsttli+rsvlseldm+vGk+lcylylsper
  CTQ27338.1  10 MPVKLAQALANPLFPALDSALRAGRHIGLDELDNHAFLMDFQDYLEEFYARYNVELIRAPEGFFYLRPRSTTLISRSVLSELDMMVGKILCYLYLSPER 108
                 89************************************************************************************************* PP

        MukE 100 laneGifsaqelydellsladekkllklvnqrstGsdldkqklqekvrtslrrlrrlGmvtaleedsekfrisesvfrfgadvrsgddpreaqlrlird 198
                 laneGif++qelydell+lade++llklvn+rstGsdld+qklqek+r+sl+rlrrlGmv+++++ds+kfri+esvfrfgadvr+gddpreaq rlird
  CTQ27338.1 109 LANEGIFTQQELYDELLTLADESRLLKLVNNRSTGSDLDRQKLQEKMRASLNRLRRLGMVWFMGHDSSKFRITESVFRFGADVRAGDDPREAQRRLIRD 207
                 *************************************************************************************************** PP

        MukE 199 Geavtadeelekeslledededeeeee 225
                 Gea+     le++ +l+de+e+++ ++
  CTQ27338.1 208 GEAMA----LENHLQLNDENEENQPDS 230
                 *****....666666666666665544 PP

>> DUF4194  Domain of unknown function (DUF4194)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   1.0     8e-06     0.048      19     156 ..      45     183 ..      33     186 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8e-06
     DUF4194  19 eallryqeavreyLadlglelvldedegvaflrqveaeeeeelprllrrrsLsleetllLlvLRklyqeaeregs....lservv......vsveeive 107
                 ++l++ q++++e+ a   +el+    eg+ +lr++++       +l++r  Ls  ++ +  +L  ly + er  +    ++++++       ++  +  
  CTQ27338.1  45 AFLMDFQDYLEEFYARYNVELIRA-PEGFFYLRPRST-------TLISRSVLSELDMMVGKILCYLYLSPERLANegifTQQELYdelltlADESRLLK 135
                 577777888888888888887654.468888888888.......3555555555555555555555554433332224644444311101134445555 PP

     DUF4194 108 kles.flpldrdeakfkkrldaalrklkelgllrrldgdeertryeIrpi 156
                  +++     d d+ k +++++a l++l++lg + +  +d+ +  ++I+ +
  CTQ27338.1 136 LVNNrSTGSDLDRQKLQEKMRASLNRLRRLGMVWFMGHDSSK--FRITES 183
                 5666666677789999********************976666..9*9976 PP

>> Tfb2  Transcription factor Tfb2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.2e-06     0.013     221     272 ..     137     188 ..     109     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.2e-06
        Tfb2 221 LsslelgkaYsvealsetqkemledLrdlGLvyqrkkkskrFypTrlattLt 272
                 + + ++g++ + ++l+e+ ++ l+ Lr+lG+v+   ++s++F +T+ +  + 
  CTQ27338.1 137 VNNRSTGSDLDRQKLQEKMRASLNRLRRLGMVWFMGHDSSKFRITESVFRFG 188
                 3456788899999**************************9*****9877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1877.78
//
Query:       CTQ27339.1  [L=1482]
Description: fused chromosome partitioning protein: putative nucleotide hydrolase; conserved hypothetical protein; conserved protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.3e-123  409.4   0.2   4.3e-123  409.4   0.2    3.3  4  MukB             MukB N-terminal
    1.2e-75  252.8   0.1    1.2e-75  252.8   0.1    4.3  4  MukB_hinge       MukB hinge domain
    1.7e-15   57.0   0.2    8.7e-15   54.7   0.0    2.4  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
      4e-08   32.9   0.6    9.2e-08   31.7   0.1    1.8  2  AAA_29           P-loop containing region of AAA domain
  ------ inclusion threshold ------
       0.31   11.5   0.0       0.31   11.5   0.0    5.9  4  ABC_tran         ABC transporter
       0.32   10.7   0.0       0.32   10.7   0.0    4.3  4  AAA_15           AAA ATPase domain
        1.2    8.5   9.8        3.7    6.9   0.4    3.1  4  SMC_N            RecF/RecN/SMC N terminal domain
        2.1    8.1   7.9       0.48   10.2   3.1    2.5  2  Sulfotransfer_4  Sulfotransferase domain


Domain annotation for each model (and alignments):
>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  409.4   0.2  1.9e-126  4.3e-123       1     226 []       2     227 ..       2     227 .. 1.00
   2 ?   -3.8   0.8         4   8.9e+03     122     160 ..     357     403 ..     336     419 .. 0.42
   3 ?   -0.9   0.1      0.51   1.1e+03      78     115 ..     560     597 ..     553     644 .. 0.64
   4 ?   -2.7   0.2       1.9   4.2e+03     130     179 ..    1239    1288 ..    1224    1311 .. 0.65

  Alignments for each domain:
  == domain 1  score: 409.4 bits;  conditional E-value: 1.9e-126
                 XX--EEEEEEEEEETTEEEEEE-HHHHHHHHHS--SHHHHHHHHHHHHHHS--TTT--------------------GGGB-SSEEEEEEEEE-TTS-EE CS
        MukB   1 iergkfksltlinWnGffartfdldelvttlsGgnGaGksttmaafvtaliPdlsllhfrntteaGatsgsrdkGlyGklkaGvcysvlevvnsreqrl 99 
                 iergkf+sltl+nWnGffartfdldelvttlsGgnGaGksttmaafvtaliPdl+llhfrntteaGatsgsrdkGl+Gkl+aGvcysvl+v+nsr+qr+
  CTQ27339.1   2 IERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLRAGVCYSVLDVINSRHQRV 100
                 79************************************************************************************************* PP

                 EEEEEEEE-SSTTT-EEEEEEEEES--TT--HHHHHEE--SSS--EE--HHHHHHHHHTSTT-EEEE-S-HHHHHHHHHHTTSBSS---SHHHHHHHHH CS
        MukB 100 lvgvrleqvagrdkkvdikpfalqgleedvkltdvlleklddkkarvrelnelkekleelegvrlkkfnsvtdyhallfdlGvipkrlrssedrskfyr 198
                 +vgvrl+qvagrd+kvdikpfa+qgl++++ +t++l+e+l+d++arv +lnelk+kle++egv++k+fns+t+yh+l+fdlGv+++rlrs++drsk+yr
  CTQ27339.1 101 VVGVRLQQVAGRDRKVDIKPFAIQGLPTSILPTQLLTETLNDRQARVVSLNELKDKLEAMEGVQFKQFNSITEYHSLMFDLGVVARRLRSASDRSKYYR 199
                 *************************************************************************************************** PP

                 HHHHHHSSS-HHHHHHHHHHHBS---XX CS
        MukB 199 lieaslyGGissaitrslrdyllpensG 226
                 lieaslyGGiss+itrslrdyllpensG
  CTQ27339.1 200 LIEASLYGGISSTITRSLRDYLLPENSG 227
                 **************************98 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4
                 EES--TT--HH.HHHEE--S...SS--EE....--HHHHHHHHHTST CS
        MukB 122 lqgleedvklt.dvllekld...dkkarv....relnelkekleele 160
                 l +l+  ++ + +v+ e +d   +++ar     +e+ elk++l++ +
  CTQ27339.1 357 LDELQIRLEEQnEVVAEAVDrqeENEARAeaaeLEVDELKSQLADYQ 403
                 44444433332123333222000222221111123445555544433 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.51
                 GGB-SSEEEEEEEEE-TTS-EEEEEEEEEE-SSTTT-E CS
        MukB  78 GklkaGvcysvlevvnsreqrllvgvrleqvagrdkkv 115
                   l+a ++  +  v+n++eqr+ +  +leq+ +r + +
  CTQ27339.1 560 QELEARIASLADSVSNAQEQRMALRQELEQLQSRTQTL 597
                 55555555555567899999999999999999987763 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 1.9
                  -HHHHHEE--SSS--EE--HHHHHHHHHTSTT-EEEE-S-HHHHHHHHHH CS
        MukB  130 kltdvlleklddkkarvrelnelkekleelegvrlkkfnsvtdyhallfd 179 
                  ++ +++ ++++ +++r+r ln+  + ++  +   ++    v++ h++l+d
  CTQ27339.1 1239 SVANIIRKTIQREQNRIRMLNQGLQSVSFGQVNSVRLNVNVRETHSMLLD 1288
                  45667777777778888888775555543222223333467777777766 PP

>> MukB_hinge  MukB hinge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   1.6       4.9   1.1e+04     141     160 ..     382     401 ..     346     410 .. 0.73
   2 ?   -3.4   0.3       3.1     7e+03       6      21 ..     576     591 ..     554     600 .. 0.59
   3 !  252.8   0.1   5.2e-79   1.2e-75       2     167 .]     645     810 ..     644     810 .. 0.99
   4 ?    4.6   0.1     0.011        24      28      81 ..     811     864 ..     809     919 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 4.9
  MukB_hinge 141 ekrleaLraerdelaeelak 160
                 e+r+ea + e del+ +la+
  CTQ27339.1 382 EARAEAAELEVDELKSQLAD 401
                 66777777777777777764 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.1
  MukB_hinge   6 laerkerLekeieeLl 21 
                 ++e++ +L +e+e+L+
  CTQ27339.1 576 AQEQRMALRQELEQLQ 591
                 3333333333333333 PP

  == domain 3  score: 252.8 bits;  conditional E-value: 5.2e-79
  MukB_hinge   2 erdelaerkerLekeieeLlkpgGsedirLlelaerlggvLLseiyddisledapyfealyGplrkAivvkDleavkeklegledcpddlyliegdpda 100
                 erde+ +rk+++++eie+L++pgGsed+rL++laer+ggvLLseiydd+sl+dapyf+alyGp+r+Aivv+Dl++v+e+legledcp+dlyliegdp++
  CTQ27339.1 645 ERDEVGARKRAIDEEIERLSQPGGSEDPRLNALAERFGGVLLSEIYDDVSLDDAPYFSALYGPSRHAIVVPDLSRVAEQLEGLEDCPEDLYLIEGDPQS 743
                 79************************************************************************************************* PP

  MukB_hinge 101 fdesvfeaeeledavlvkdsdrqlRysrfPevPlfGraaRekrleaLraerdelaeelakaafdvqk 167
                 fd+svf+++ele+av+vk +drq+RysrfP++PlfGraaRe+r+e+L+aer++l+e++a+ +fdvqk
  CTQ27339.1 744 FDDSVFSVDELEKAVVVKIADRQWRYSRFPSLPLFGRAARENRIETLHAERESLSERFATLSFDVQK 810
                 *****************************************************************97 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.011
  MukB_hinge  28 dirLlelaerlggvLLseiyddisledapyfealyGplrkAivvkDleavkekl 81 
                   rL++   r+ g+ L+ +++d + e+  +++++ G+l +A+  +++ + ++++
  CTQ27339.1 811 TQRLHQAFSRFIGSHLAVAFEDDPEEEIRKLNSRRGELERALSAHESDNQQNRV 864
                 57999************************************9887766655544 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.6   5.9e+03      27      49 ..      26      46 ..      21      52 .. 0.62
   2 !   54.7   0.0   3.9e-18   8.7e-15       2      89 ..    1336    1424 ..    1335    1425 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.6
     SbcCD_C 27 srssgtlSGGekqflaylalaaa 49
                ++ ++tlSGG +    ++++ aa
  CTQ27339.1 26 DELVTTLSGGNG-AGKSTTM-AA 46
                566889****98.3333333.33 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 3.9e-18
     SbcCD_C    2 evldyRnylsfevevrdedgkekelsrssgtlSGGekqflaylalaaalaalyssaeg.repa...lrlvfLDEAFsklDeesiatllelle 89  
                  e+ldyRnyl++evev+  +g++++l+++sg+lS+Ge+  + + +l++ + ++ +++++ r ++   +rl+fLDEA ++lD++siatl+el+e
  CTQ27339.1 1336 ELLDYRNYLEMEVEVN--RGSDGWLRAESGALSTGEAIGTGMSILVMVVQSWEDESRRlRGKDispCRLLFLDEA-ARLDARSIATLFELCE 1424
                  89**************..999999**********************88888888876444333567*********.**************98 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   4.1e-11   9.2e-08       3      49 ..       9      54 ..       7      64 .. 0.91
   2 ?   -2.4   0.0       1.8     4e+03      35      57 ..     396     419 ..     396     422 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 4.1e-11
      AAA_29  3 rlqlvNWgtfdghtieidlkg.atlltGpsGsGKSTllDAiqalLvpa 49
                +l lvNW  f  +t+++d  + +t l+G +G+GKST + A+ + L+p+
  CTQ27339.1  9 SLTLVNWNGFFARTFDLD--ElVTTLSGGNGAGKSTTMAAFVTALIPD 54
                789**************9..668***********************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
      AAA_29  35 KSTllDAiqalLvpak.kvrfNka 57 
                 KS l D +qal v ++  +++N+a
  CTQ27339.1 396 KSQLADYQQALDVQQTrAIQYNQA 419
                 8999999999999999899***99 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.31      13      38 ..      29      54 ..      22      75 .. 0.83
   2 ?  -10.4  12.8         8   1.8e+04      55     119 ..     516     583 ..     211     627 .. 0.72
   3 ?   -4.9   5.2         8   1.8e+04      56      56 ..     921     921 ..     811    1084 .. 0.65
   4 ?    2.4   0.6     0.094   2.1e+02      68     129 ..    1220    1285 ..    1183    1319 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
                EEEEEESTTSSHHHHHHHHTTSS--S CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkpt 38
                ++ + G nGaGKSt ++++   l p+
  CTQ27339.1 29 VTTLSGGNGAGKSTTMAAFVTALIPD 54
                56799*************99988876 PP

  == domain 2  score: -10.4 bits;  conditional E-value: 8
                 HHCCHCEEEE-SS--S-TTSBHHHH...............HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  55 eslrkeigvlpqepqlfpeltvren...............esdeeiekalsklglkelkdtvvksspssLSgGqkqrval 119
                 + lr+++  l+q            +               +++ + +++ +   l++  + ++ s + s+S  q qr+al
  CTQ27339.1 516 QGLRSRLNELEQ------------RlreqqdaerqlaefcKRQGKRYDIDDLETLHQELEARIASLADSVSNAQEQRMAL 583
                 222222222222............02221211111222232222222222222222233444446667777777777776 PP

  == domain 3  score: -4.9 bits;  conditional E-value: 8
                 H CS
                 x RF
    ABC_tran  56 s 56 
                 +
  CTQ27339.1 921 K 921
                 2 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.094
                  --S-TTSBHHHH....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSE CS
                  xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   68 pqlfpeltvren....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkl 129 
                  ++l +elt+re+     s++ ++ ++++++ ++ + + ++++ +s+S Gq   v l   + +  ++
  CTQ27339.1 1220 SRLTEELTNREQklaiSSRSVANIIRKTIQREQNRIRMLNQGLQSVSFGQVNSVRLNVNVRETHSM 1285
                  567777777777777333333444555555555555555555588888888877776555444444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014      0.32      17      43 ..      21      47 ..       6      52 .. 0.82
   2 ?    1.5   0.8     0.086   1.9e+02      63     165 ..     346     450 ..     256     581 .. 0.68
   3 ?   -2.0   3.4         1   2.3e+03     141     262 ..     783     920 ..     769    1048 .. 0.72
   4 ?    1.0   0.5      0.12   2.7e+02     210     310 ..    1179    1278 ..    1164    1301 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
      AAA_15 17 veidlseeltvliGkNnsGKSsileal 43
                 + dl+e +t+l G N++GKS+ + a+
  CTQ27339.1 21 RTFDLDELVTTLSGGNGAGKSTTMAAF 47
                56799******************9987 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.086
      AAA_15  63 edleifeniseskdikIdvefaek.ekakeyektlkskekkkadlllkkkesdlkktikdkklklkk.nelsdekisvekkkskkelpkekeeklekek 159
                 ++ +i+++++   +++I++e++++   + ++ +++++ +++ a+l++++++s+l ++ +  + +    +++++    +e  k+  +lp+++ e++++  
  CTQ27339.1 346 QQEKIERYEADLDELQIRLEEQNEvVAEAVDRQEENEARAEAAELEVDELKSQLADYQQALDVQQTRaIQYNQALQALERAKALCHLPDLTPESADEWL 444
                 344455555666666666666333544444445555555555555555555555555554444433202233333333333334444444444444444 PP

      AAA_15 160 eelkid 165
                 e+++ +
  CTQ27339.1 445 ETFQAK 450
                 444444 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1
      AAA_15 141 kkskkelpkekeeklekekeelkidkedlkklikkleeslkkee..........elknvlksaiiklllisakRnvsd...edsekkssllgklkekil 226
                 ++++ e    ++e+l ++ ++l++d +++++l + ++  + ++           e+ ++ +   ++ +  sa  + ++    ++e+ ++  ++l + + 
  CTQ27339.1 783 RENRIETLHAERESLSERFATLSFDVQKTQRLHQAFSRFIGSHLavafeddpeeEIRKLNSRRGELERALSAHESDNQqnrVQYEQAKEGVSALNRLLP 881
                 556667777777888888888888888888888888888888888888888888666666666666666666555555333444444444444433333 PP

      AAA_15 227 eealqekleeelteklkeiqeklkeidkklaeelk......k 262
                 +  l+  +++ l e  +eiqe l+e+++     ++       
  CTQ27339.1 882 R--LNLLADDTLAERVDEIQERLDEAQEAA-RFIQqhgnqlA 920
                 3..333337888888888888888888765.22223444553 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.12
      AAA_15  210 dsekkssllgklkekileealqekl.eeelteklkeiqeklkeidkklaeelkkilkkkidkikkfnykgkkneeieikddeelplnknGsGvqrll 305 
                  + e k  ++ ++++ + e + q+   +++  e++++++ +l+ + ++l+++++k  +++ +  + +   ++ ++++      ++ l  +++G+ + +
  CTQ27339.1 1179 RPERKIQFFVAVYQHLRERIRQDIIrTDDPVEAIEQMEIELSRLTEELTNREQKLAISSRSVANIIRKTIQREQNRI--RMLNQGLQSVSFGQVNSV 1273
                  55677777778888888877776668778888888888888888888888888655555555555555555555544..777788888888888877 PP

      AAA_15  306 llill 310 
                   l++ 
  CTQ27339.1 1274 RLNVN 1278
                  77665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0017       3.8      17      44 ..      20      47 ..       6      60 .. 0.81
   2 ?   -2.8   0.2       1.6   3.5e+03     164     188 ..     895     917 ..     783     951 .. 0.85
   3 ?   -4.6   0.0       5.5   1.2e+04     110     119 ..    1065    1074 ..     980    1162 .. 0.68
   4 ?    6.9   0.4    0.0016       3.7      46     201 ..    1186    1439 ..    1182    1458 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0017
                EEEEETTSSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 17 tvilpfsksftaivGpNGSGKsnlldAi 44
                + + ++++ +t + G NG+GKs  + A 
  CTQ27339.1 20 ARTFDLDELVTTLSGGNGAGKSTTMAAF 47
                4567889999*************99985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.6
                 ECTTTTTS-HHHHHHHHHHHHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 164 lDeidaaLDeknvkkvaellkeksk 188
                 +Dei+  LDe++  + a++++++ +
  CTQ27339.1 895 VDEIQERLDEAQ--EAARFIQQHGN 917
                 588888888764..44566665554 PP

  == domain 3  score: -4.6 bits;  conditional E-value: 5.5
                  EEEETTEEE- CS
                  xxxxxxxxxx RF
       SMC_N  110 eykingkevt 119 
                  ++++ +++ +
  CTQ27339.1 1065 HMQLSNNRSR 1074
                  3333333333 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0016
                  HHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT....... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
       SMC_N   46 FvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsellesagiske....... 135 
                  F      +++lr++  +d+i   +  +++++ e+e+      ++l+ +++++ is r + +   + +i++++ + + +++ l+s+ + +        
  CTQ27339.1 1186 FFVA--VYQHLRERIRQDIIRTDDPVEAIEQMEIELS--RLTEELTNREQKLAISSRSVANII-RKTIQREQNRIRMLNQGLQSVSFGQVnsvrlnv 1277
                  5555..4679***********9777777777777774..334444445555555555444443.445555555555555555555555555555666 PP

                  ......................................................................................CS-HHHHHHHH CS
                  ......................................................................................xxxxxxxxxxx RF
       SMC_N  136 ......................................................................................lLSgGektLva 146 
                                                                                                        +LS Ge   + 
  CTQ27339.1 1278 nvrethsmlldvlseqheqhqdlfnsnrltfsealaklyqrlnpqidmgqrtpqtigeelldyrnylemevevnrgsdgwlraesgALSTGEAIGTG 1374
                  67777999************************************************************************************99999 PP

                  HHHHHH.............HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHH CS
                  xxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  147 laLlfA.............iqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreem 201 
                  +++l+               + ++p  l +lDe +a LD++ ++ + el ++ +  +Q+i+ + ++  
  CTQ27339.1 1375 MSILVMvvqswedesrrlrGKDISPCRLLFLDE-AARLDARSIATLFELCERLE--MQLIIAAPENIS 1439
                  998887789999999997777888999999**9.589**********9999998..999998766655 PP

>> Sulfotransfer_4  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.1   0.00021      0.48      38     183 ..     366     542 ..     342     549 .. 0.79
   2 ?   -3.1   0.2       2.6   5.8e+03     138     172 ..     984    1015 ..     952    1020 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00021
  Sulfotransfer_4  38 sdlkewaealeakkegk.....kpitredfdkllggydavvdvpaa..lfaeelleayPdakvIl.....teRdpekWlksmkktllalrsetl 119
                      ++ + +aea+++++e++     ++++ +++++ l++y+ ++dv ++  + +++ l+a  +ak ++     t ++ ++Wl+ +++  ++++++ l
       CTQ27339.1 366 EQNEVVAEAVDRQEENEaraeaAELEVDELKSQLADYQQALDVQQTraIQYNQALQALERAKALChlpdlTPESADEWLETFQAKEQEATEKML 459
                      466778889999988888988899999999*************876337899************9888889999*********99999998855 PP

  Sulfotransfer_4 120 s..rllalldplle................llaklvellralvrrlfgagsdaedeeaakeayeehnervrevvpaer.lLvy 183
                      s  + ++ +++ ++                ++++ +++ r+l+r+ ++++ +ae+ + +++ ++e ++r+re   aer l ++
       CTQ27339.1 460 SleQKMSVAQTAHSqfeqayqlvaaingplARNEAWDVARELLRDGVNQRHQAEQAQGLRSRLNELEQRLREQQDAERqLAEF 542
                      52244555555555666777777777777777777777777777777777777999999999999999999999977735555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.6
  Sulfotransfer_4  138 ellralvrrlfgagsdaedeeaakeayeehnervr 172 
                       +l ++l +rl +a   ++++++a++a+++h +++ 
       CTQ27339.1  984 DLNEKLRQRLEQA---ESERSRARDAMRAHAAQLS 1015
                       4444443333333...5888999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2153  (0.120085); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        62  (0.00345808); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 2.01u 0.41s 00:00:02.42 Elapsed: 00:00:00.67
# Mc/sec: 6704.66
//
Query:       CTQ27340.1  [L=596]
Description: putative exported enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-30  106.1   0.0    3.2e-30  105.5   0.0    1.3  1  YkuD          L,D-transpeptidase catalytic domain
    1.8e-09   37.7   1.9      1e-07   32.1   0.0    2.9  2  PG_binding_1  Putative peptidoglycan binding domain


Domain annotation for each model (and alignments):
>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.0   3.6e-34   3.2e-30       4     140 ..     358     524 ..     355     553 .. 0.94

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 3.6e-34
                 EEEETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTT................. CS
        YkuD   4 ivvdlaeqrllvlyengklvlsfpvsvGgkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskv................. 85 
                 i+v++++ + lv+y++g++vl  +v+vG   ++dr+TP +++ ++++v+np wnvpp+ ark+i pk r++p yl+++++ v                 
  CTQ27340.1 358 IMVNIPA-FSLVYYQDGSQVLASRVIVG---RPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVmrgwnsketidpyrvdw 452
                 9******.999*****************...67****************************************************************** PP

                 ....................CECCCCEEE-STTS-EEEE.ETCSS...CTHHC..BSSSEEE-HHHHHHHHHHHHT CS
        YkuD  86 ....................algkvkfvfpngsgiyiHgtgapdlfergkgarr.ShGCirlseedakelyelvlv 140
                                     +lg++kf++p++++iy+H+t++ +lf+++   r+ S+GC+r+  ++a el++ +l+
  CTQ27340.1 453 stitennlpfrfqqapgarnSLGRYKFNMPSSDAIYLHDTPNHNLFQKD--VRAlSSGCVRV--NKASELANMLLQ 524
                 **********************************************993..5559*******..9******99874 PP

>> PG_binding_1  Putative peptidoglycan binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.9      0.01        94      31      40 ..     114     123 ..     111     125 .. 0.87
   2 !   32.1   0.0   1.1e-11     1e-07       4      57 .]     255     329 ..     253     329 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.01
                   HHHHHHHHHH CS
  PG_binding_1  31 eeaVkefQqf 40 
                   +eaV++fQq+
    CTQ27340.1 114 REAVQAFQQQ 123
                   79******97 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 1.1e-11
                   HHHHHHHHHHHTT--.........S.............SSSSB--HHHHHHHHHHHHHTTST-SSSBSHHHHHHH CS
  PG_binding_1   4 dvkelqryLsrlGyl........sg.............padgtfgpateeaVkefQqffgLpvtGildpaTlaal 57 
                   d+ +l++ L+r G l        +g             +a g+++ +++e Vk+fQ  +gL ++G+++++T++ l
    CTQ27340.1 255 DIGALREILQRTGMLensanivlPGdvvspsakkkskpAARGVYDRQLVEGVKRFQAMQGLGADGVIGQSTRDWL 329
                   66666666666666655444433113333333333333566******************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4371.30
//
Query:       CTQ27341.1  [L=218]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-61  206.4   0.0    2.1e-61  206.1   0.0    1.1  1  Peptidase_M15_2  Bacterial protein of unknown function (DUF88
    2.3e-12   47.0   0.0    3.4e-12   46.4   0.0    1.3  1  Peptidase_M15_3  Peptidase M15


Domain annotation for each model (and alignments):
>> Peptidase_M15_2  Bacterial protein of unknown function (DUF882)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.1   0.0   2.3e-65   2.1e-61       3     153 .]      70     218 .]      68     218 .] 0.99

  Alignments for each domain:
  == domain 1  score: 206.1 bits;  conditional E-value: 2.3e-65
  Peptidase_M15_2   3 aaetrslklknlhtgekaeivykengkylsealkkldkllrdfrrnevtrmdkrlfdlllqvkrklgskeeiqvvsgyrsPatnallrsrskgv 96 
                      +  +r+l+l+nlhtge+++++++++  y +++l++l++++rd+r n+++ +d++lfd+l++++  lg+++ +q++sgyrs  tn  lr+rs+gv
       CTQ27341.1  70 TPRPRILTLNNLHTGESLRAEFFDGRGYIQDELARLNHFFRDYRANKIKSIDPNLFDHLYRLQGLLGTNKPVQLISGYRSLDTNDELRARSRGV 163
                      6789****************************************************************************************** PP

  Peptidase_M15_2  97 akksyhmlGkaidfrldgvklkklreialklqvGGvGyyPksgspfvhvdvGpvrkW 153
                      ak+syh++G+a+df+++g++l+++r++al++++GGvGyyP+s+  fvh+d+Gpvr+W
       CTQ27341.1 164 AKHSYHTKGQAMDFHIEGISLSNIRKAALSMRAGGVGYYPRSN--FVHIDTGPVRHW 218
                      ******************************************9..************ PP

>> Peptidase_M15_3  Peptidase M15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   3.8e-16   3.4e-12      24     111 .]     116     211 ..      97     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 3.8e-16
  Peptidase_M15_3  24 taka.vqkllaklealreklgk..pivvtSgyRseevn.....rkvGGatdsqHltgkAaDitvsgknkeelaeilraaaaegvgikrhnsfvH 109
                      + k+  ++l + l  l+  lg   p+ + SgyRs ++n     r+ G a++s+H++g+A+D+ + g + +++++++ + +a+gvg++ +++fvH
       CTQ27341.1 116 KIKSiDPNLFDHLYRLQGLLGTnkPVQLISGYRSLDTNdelraRSRGVAKHSYHTKGQAMDFHIEGISLSNIRKAALSMRAGGVGYYPRSNFVH 209
                      333347899999999999999888*************95555455699********************************************** PP

  Peptidase_M15_3 110 ld 111
                      +d
       CTQ27341.1 210 ID 211
                      98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1716.80
//
Query:       CTQ27342.1  [L=215]
Description: putative metal-binding hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-32  111.2   1.8    7.1e-32  111.0   1.8    1.0  1  Lactamase_B    Metallo-beta-lactamase superfamily
     0.0017   17.9   0.0      0.056   12.9   0.0    2.1  1  Lactamase_B_5  Metallo-beta-lactamase superfamily
      0.002   17.6   0.1     0.0022   17.5   0.1    1.3  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   1.8   1.2e-35   7.1e-32       3     197 .]      10     192 ..       8     192 .. 0.92

  Alignments for each domain:
  == domain 1  score: 111.0 bits;  conditional E-value: 1.2e-35
                  CCSSEEEEEE..ETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHT CS
  Lactamase_B   3 pdpvnsylie..gdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglll 98 
                   + +n+ li+      + L+D+G+++e+ +a+     +   +  +  ++lTH+HlDH+G++++l+++++vpv+  ++e++ +++  + ++++++    
   CTQ27342.1  10 AFAQNCSLIWcgQTRLAALVDPGGDAERIKAV-----VAEAGVTLMQILLTHGHLDHVGAAAELAQHYGVPVIGPEKEDEFWLEGLPAQSRMFGL--- 99 
                  6789******95556677*************9.....*******************************************************996... PP

                  TCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHHCHSEEEE. CS
  Lactamase_B  99 agvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaevrdpsdaekyldsllklaglkaevlvp. 195
                  +   +  pd++++e+d+   g +al v ++pgh++gh+v++++  ++l++GD+++ g  gr d++ +++  + ++++ek+l        l ++v ++ 
   CTQ27342.1 100 EDCQPLRPDRWLNEGDVVNVGNVALQVLHCPGHTPGHVVFFDDASRLLISGDVIFKGGVGRSDFPRGDHGQLIAAIKEKLL-------PLGDDVTFIp 190
                  799999**********************************************************77777777777777777.......8888887777 PP

                  SS CS
  Lactamase_B 196 gH 197
                  gH
   CTQ27342.1 191 GH 192
                  88 PP

>> Lactamase_B_5  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   9.4e-06     0.056      87     138 ..      99     153 ..      15     162 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.4e-06
  Lactamase_B_5  87 eketfpiacdrwlsdgdelvsg...lkvlelkgsktpgelalllee.ttlitgdlv 138
                      ++ p++ drwl++gd +  g   l+vl+  g +tpg + ++ +  + li+gd++
     CTQ27342.1  99 LEDCQPLRPDRWLNEGDVVNVGnvaLQVLHCPG-HTPGHVVFFDDAsRLLISGDVI 153
                    35788999*********9987744467776666.7999998887651567999988 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   3.7e-07    0.0022      29      65 ..      47      81 ..      26     191 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.7e-07
                   .SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHH CS
  Lactamase_B_2 29 ppidaVllthaHyDHlaglltlrelrpkklplyapkg 65
                     +  +llth+H DH+  +  l++ ++  +p+++p++
     CTQ27342.1 47 VTLMQILLTHGHLDHVGAAAELAQHYG--VPVIGPEK 81
                   45666***********99999999544..99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1597.93
//
Query:       CTQ27343.1  [L=396]
Description: aspartate aminotransferase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-93  313.5   0.0    2.3e-93  313.3   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.3   0.0   1.3e-97   2.3e-93       2     363 .]      27     392 ..      26     392 .. 0.98

  Alignments for each domain:
  == domain 1  score: 313.3 bits;  conditional E-value: 1.3e-97
                    EEEESSSSSTTSTTSS.HHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT- CS
  Aminotran_1_2   2 dvinLgsneylgdsgk.ptlpevakaekegalaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllklnpgd 94 
                    ++inLg++ y++++gk p+l++v+kae+  +l+++t+++y+ idg pe+  ++ ++l+   +  ++ kr ++ ++ +G+gal++a++fl+k+   +
     CTQ27343.1  27 EKINLGIGVYKDETGKtPVLTSVKKAEQY-LLENETTKNYLGIDGIPEFGRCTQELLFgkGNAIIADKRARTAQTPGGTGALRVAADFLAKNTDVK 121
                    79***************************.****************************966668999***********************999999 PP

                    EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETT CS
  Aminotran_1_2  95 eilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaY 190
                    +++v++p+++++k ++  +g+ev++y++y++++  ld+++l++ l+ea++g++   v+++ ++hNPtG ++tl+++++l++l  ++++l+++D+aY
     CTQ27343.1 122 RVWVSNPSWPNHKSVFTSAGLEVREYAYYDAANHALDFDGLLASLNEAQAGDV---VLFHGCCHNPTGIDPTLDQWQQLAQLSVEKGWLPLFDFAY 214
                    9****************************************************...**************************************** PP

                    TTCBSSSS.HTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH.......HHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHH...H CS
  Aminotran_1_2 191 agfvfgsl.davatranveeepnllivgslsKafGlaGeRvGyilgna.......avvsqlrklsrpfls..ssllqaavaaalsdallkqs...e 273
                    +gf+ g + da+ +ra+++ + +ll+++s+sK+fGl++eRvG+++ +a       +  sq++++ r+ +s  +++++ +va++ls++ l++    e
     CTQ27343.1 215 QGFARGLEeDAEGLRAFAALHKELLVASSYSKNFGLYNERVGACTLVAadqetvdRAFSQMKSVIRANYSnpPAHGASVVATILSNDALRAIweqE 310
                    ******77999999********************************999***************************************9988999* PP

                    HHHHHHHHHHHHHHHHHHHHHS....TEEEECCSCSSEEEEEETHHCHHHHHHH..HHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 274 leemrqrlqkrrkelrdeLael....glkvlasqsgmflltdlsaetakelskk..LleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                    l++mrqr+q++r  +++ L+e+    +++++++q+gmf++++l++e      ++  L+ee+ +y ++        ++Ri+vAg+t++++  l+ea+
     CTQ27343.1 311 LTDMRQRIQRMRLLFVNTLQEKgasrDFSFISQQNGMFSFSGLTKE------QVlrLREEFAIYAVA--------SGRINVAGMTPDNMAPLCEAI 392
                    **********************************************......9999***********........9******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3114.51
//
Query:       CTQ27344.1  [L=359]
Description: outer membrane pore protein N, non-specific [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-126  422.5  32.4   1.6e-126  422.3  32.4    1.0  1  Porin_1    Gram-negative porin
  ------ inclusion threshold ------
        5.2    7.2  42.9      0.039   14.1  20.6    2.8  2  OMP_b-brl  Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> Porin_1  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  422.3  32.4  1.8e-130  1.6e-126       1     340 []      28     359 .]      28     359 .] 0.97

  Alignments for each domain:
  == domain 1  score: 422.3 bits;  conditional E-value: 1.8e-130
                 CTTEEEEEEEEEEEEEEEES.TTSTCEEEEEEEEEEEEEEESSSSEEEEEEEEEEEESSSBTTCTTTCEEEEEEEEEEETTTEEEEEEEEE-TTHHHHC CS
     Porin_1   1 Kdgnkldlygkvtklhyfsd.eksedgddtyariGfKGetqindqLtgygqwEyevkvngtegesaqsktrlaFaGLkfgevGsldyGrnygvvydvea 98 
                 K+gnkld ygk+++ h++++  +++  d+tyariG+KGetqindqL gygqwEy++ + + eg+ + +ktrlaFaGLk ge+Gs+dyGrnyg++ydvea
  CTQ27344.1  28 KNGNKLDFYGKMVGEHVWTTnGDTSSDDTTYARIGLKGETQINDQLIGYGQWEYNMDASNVEGS-QTTKTRLAFAGLKAGEYGSFDYGRNYGAIYDVEA 125
                 8*****************995667778899********************************87.6789****************************** PP

                 TTTTSSSSSSCTSSCTTSTTTSEECCEEEEEESCCCCTSTTEEEEEEEE--B-TS....SSTTT-BESEEEEEEEEEETT..EEEEEEEEEEEE-CHHC CS
     Porin_1  99 wtdvlpefggdtvaqtdnfmtkrangvatYrntdFfGlvdglnfalqyqgknedtstnnrnlkksngdgygvslsYeveGfalsvagayarsdrtakqk 197
                 +td+l e ggd + +tdn+mt+r+ngvatYrn+dFfGlvdgl+falqyqgkn++    +r ++k+ngdg+ ++++Y ++ +++++++ y++s+r  +qk
  CTQ27344.1 126 ATDMLVEWGGDGWNYTDNYMTGRTNGVATYRNSDFFGLVDGLSFALQYQGKNDH----DRAIRKQNGDGFSTAATYAFD-NGIALSAGYSSSNRSVDQK 219
                 ***************************************************999....59*******************.7****************98 PP

                 ......TSSCSSTSEEEEEEEEEEEEETTEEEEEEEEEECSESEEEEEEEESEEEEEEEEEEE-BTTSEEEEEEEEEEEEECETT....STCCEEEEEE CS
     Porin_1 198 lelkseakllgngkkaevwalglkYdanniylaaaYaetrnatlvgasgianktqnlevvaqyqfdfGlrPsiaYvqskgkdleg....kkgdndlvky 292
                         ++gng+kae+wa+++kYdanniy a++Y++t+n+t+ +++ +a ktqn+e+v+qyqfdfGlrPsi+Yvq kgkdl++    + gd+dlvky
  CTQ27344.1 220 --------ADGNGDKAEAWATSAKYDANNIYAAVMYSQTYNMTPEEDNHFAGKTQNFEAVVQYQFDFGLRPSIGYVQTKGKDLQSragfSGGDADLVKY 310
                 ........578**************************************************************************888899******** PP

                 EEEEEEEECCSSEEEEEEEEEE-S-TTSSC.CTSSTSC-EEEEEEEEEE CS
     Porin_1 293 vdvGatYyFnKnmsayVdykinlldkdddk.elgistddivavglvyqF 340
                 ++vG+ YyFnKnm++y  yk+n+ld++d++ ++g++tdd++avg+vyqF
  CTQ27344.1 311 IEVGTWYYFNKNMNVYAAYKFNQLDDNDYTkAAGVATDDQAAVGIVYQF 359
                 ****************************98799***************9 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4  14.2       0.5   4.5e+03       5      76 ..      13     102 ..       9     182 .. 0.51
   2 ?   14.1  20.6   4.3e-06     0.039       9     178 .]     191     359 .]     190     359 .] 0.77

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.5
   OMP_b-brl   5 llaalsaaaaa.....assfggfyvg.gglglskvkvdgvgsdsg.fgfgvgagyefndnvgvegglsysgdkdysgs...........g 76 
                 +l++++aa+aa     ++++  fy + +g  + ++++d +  d++   +g++++ ++nd +  +g+  y+ d ++  +           g
  CTQ27344.1  13 ALLVAGAANAAeiynkNGNKLDFYGKmVGEHVWTTNGDTSSDDTTyARIGLKGETQINDQLIGYGQWEYNMDASNVEGsqttktrlafaG 102
                 34444444444455665566666644433332233333333333338************9888888888776554432222222333331 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 4.3e-06
   OMP_b-brl   9 lsaaaaaassfggfyvggglglskvkvdgv...gsdsgfgfgvgagyefnd.nvgvegglsysgdkdysgsgktdikinllsvpvnagyafnlsdsvlp 103
                 +s+aa++a +  g  + +g+++s+ +vd+    ++d+  ++  +a y+ n+ + +v+++ +y+ + +        +  +++++ + + y+f+    +++
  CTQ27344.1 191 FSTAATYAFD-NGIALSAGYSSSNRSVDQKadgNGDKAEAWATSAKYDANNiYAAVMYSQTYNMTPEEDN----HFAGKTQNFEAVVQYQFD----FGL 280
                 7888888887.899*********77776664333345688899999999876899999999988866555....6778999**********9....677 PP

   OMP_b-brl 104 yggaGlgytkvevdvsgngasdsdtdfglglgaGveyaladnwslkaeYrytdlksdadnd.......lknntfqvgvgyrF 178
                    +G+ +tk +   s  g+s  d d   ++++G  y++++n+++ a Y+ + l++   nd        + ++  vg  y+F
  CTQ27344.1 281 RPSIGYVQTKGKDLQSRAGFSGGDADLVKYIEVGTWYYFNKNMNVYAAYKFNQLDD---NDytkaagvATDDQAAVGIVYQF 359
                 7777777665543333332588888888899***********************66...33334666567799999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2681.31
//
Query:       CTQ27345.1  [L=70]
Description: hypothetical protein CH1034_180032 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       190  (0.0105974); expected 358.6 (0.02)
Passed bias filter:                      151  (0.00842211); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 572.67
//
Query:       CTQ27346.1  [L=466]
Description: asparaginyl tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-82  275.5   0.0    6.1e-82  275.2   0.0    1.0  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    1.3e-12   47.5   0.3      4e-12   45.9   0.2    1.9  2  tRNA_anti-codon  OB-fold nucleic acid binding domain
     0.0028   17.2   0.1        1.1    8.6   0.0    2.3  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.2   0.0     1e-85   6.1e-82       3     313 ..     119     460 ..     117     461 .. 0.95

  Alignments for each domain:
  == domain 1  score: 275.2 bits;  conditional E-value: 1e-85
                  CHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT......T........EEE....-E-S-SHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xx........xxx....xxxxxxxxxx RF
  tRNA-synt_2   3 elrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrek.....ek........eff....aLtqspqlyl 83 
                  e++++  +l++rt+ + +v r+r+t+++a++++++e+gf+ + tP+++ sdte++++ F v +        ++        +ff    +Lt+s+ql  
   CTQ27346.1 119 EYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTLDLenlprNDqgkvdfdkDFFgkesFLTVSGQLNG 216
                  6678899******************************************************77666556551156677777999************** PP

                  HHHHHCTHSEEEEEEEEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS.......EE-SSS.-EEEEH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxx.xxxxxx RF
  tRNA-synt_2  84 ellivagidrvfqiaraFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrns.......kdlkkp.fkrlty 173
                  e+++ a ++++++++++FRaE+s+t+rhlaEF+++e e++f++ +d+  ++e ++k+++k vle+ a+d++f  +r         + +++  f +++y
   CTQ27346.1 217 ETYACA-LSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDVAGLAEAMLKYVFKAVLEERADDMQFFAERVDkdaidrlQRFITAdFAQVDY 313
                  ******.******************************************************************9998899999997777777****** PP

                  HHHHHHHHTS..........-SS--HHHHHHHHHHS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTE.EEEEEEEB--SHHHHHHHHHHC CS
                  xxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 174 keaieklnei..........gkdldkaderalvkkeknepvfvtdfPaelkpFyarkeeddkkltesyDllingv.ElvgGslRiedpeeleeklksk 260
                  ++a+++l++           g dl++++er+l +++ + pv v ++P+ +k Fy+r +ed  k+++++D+l +g+ E++gGs+R+e+ ++l +++ + 
   CTQ27346.1 314 TDAVTILENCgkqfenpvywGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNED-GKTVAAMDVLAPGIgEIIGGSQREERLDVLDARMAEM 410
                  ******9888**************************************************.8************************************ PP

                  CHHSSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 261 gldeeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  gl+   +e + wy ++++yG++ph+G+glG++Rl+++++g +++rdvi+FP++
   CTQ27346.1 411 GLN---KEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRT 460
                  ***...*********************************************97 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.2   6.7e-16     4e-12       1      75 [.      20      99 ..      20     100 .. 0.95
   2 ?   -2.3   0.0      0.77   4.6e+03      18      37 ..     254     283 ..     251     297 .. 0.62

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 6.7e-16
                     EEEEEEEEEEEEEEETTEEEEEEEETT..EEEEEEEET..HHHHHHHTTS-TTSEEEEEEEEEECTTS..SEEEEEEEEEE CS
  tRNA_anti-codon  1 VtvaGrvtsisdrsggkvifidlrDgt..griqvvlfr..eeatklaenlkeGdvvrvtGrvkrrpgg..elelkveeiel 75
                     Vtv+G+v++++  s+++++f+ + Dg+  + +q+v+++   ++ +   +l+ G+ v vtG+v +++g+   +e++++++e+
       CTQ27346.1 20 VTVRGWVRTRR-DSKAGFSFLAVYDGScfDPVQAVINNslPNYNQEVLRLTTGCSVIVTGKVVASQGQgqSFEIQATSVEV 99
                     9*********9.**************************99999999999****************66667********996 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.77
                      EEEEEEEETTEEEEEEEET..........H CS
  tRNA_anti-codon  18 vifidlrDgtgriqvvlfr..........e 37 
                      v+f+ l+D  g  +++l            +
       CTQ27346.1 254 VAFANLNDVAGLAEAMLKYvfkavleeraD 283
                      788899998887777766644434444433 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0012       7.1     103     162 ..     225     283 ..     219     290 .. 0.83
   2 !    8.6   0.0   0.00019       1.1     209     234 ..     429     454 ..     421     457 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0012
                   EEEEEEEEEBSST.-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHHHCTSTEEEEEE CS
  tRNA-synt_2d 103 kiisigrvfRrda.vDathlaeFhqveglvvdenvsladlkgvleellkklfgaevkvrfr 162
                   ki ++g +fR ++   ++hlaeF  +e  v+    +l+d+ g++e++lk++f a ++ r +
    CTQ27346.1 225 KIYTFGPTFRAENsNTSRHLAEFWMLEPEVAF--ANLNDVAGLAEAMLKYVFKAVLEERAD 283
                   7888999*****96778899999999988876..567899999*******99988777765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00019
                   SEEEEEEEEHHHHHHHHHT-SSGHHH CS
  tRNA-synt_2d 209 vsgfafGlGveRlamlkygieDiRel 234
                   v+  +fGlG+eRl    +g++++R++
    CTQ27346.1 429 VPHSGFGLGFERLIAYVTGVQNVRDV 454
                   56678*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 3922.23
//
Query:       CTQ27347.1  [L=154]
Description: Uncharacterized HTH-type transcriptional regulator y4tD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-18   64.6   0.6    7.8e-18   63.8   0.6    1.4  1  HTH_24          Winged helix-turn-helix DNA-binding
    1.7e-15   56.7   0.2    3.2e-15   55.8   0.2    1.4  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    2.1e-14   53.1   1.9    3.8e-14   52.2   1.9    1.4  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    8.6e-08   32.0   0.1    1.6e-07   31.2   0.1    1.4  1  MarR            MarR family
      1e-07   31.8   0.3    1.9e-07   30.9   0.3    1.4  1  HTH_11          HTH domain
    1.2e-07   31.5   0.2    2.1e-07   30.7   0.2    1.4  1  MarR_2          MarR family
    1.3e-07   31.5   0.1    1.3e-06   28.3   0.1    2.1  2  HTH_Crp_2       Crp-like helix-turn-helix domain
    2.1e-05   24.3   0.0    4.2e-05   23.3   0.0    1.5  1  HTH_5           Bacterial regulatory protein, arsR family
    2.3e-05   24.4   0.0    5.9e-05   23.0   0.0    1.7  1  HTH_20          Helix-turn-helix domain
    0.00017   21.3   0.0    0.00034   20.3   0.0    1.5  1  HTH_IclR        IclR helix-turn-helix domain
     0.0015   18.5   0.0     0.0026   17.7   0.0    1.4  1  GYD             GYD domain
     0.0022   17.7   0.0     0.0037   17.0   0.0    1.3  1  HTH_23          Homeodomain-like domain
     0.0023   17.6   0.1     0.0048   16.6   0.1    1.6  1  LexA_DNA_bind   LexA DNA binding domain
     0.0042   16.7   0.0     0.0077   15.9   0.0    1.4  1  Sigma70_r4_2    Sigma-70, region 4
     0.0051   17.1   0.1     0.0099   16.2   0.1    1.4  1  Rrf2            Transcriptional regulator
     0.0059   16.3   0.5      0.013   15.3   0.5    1.5  1  HTH_38          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.012   15.8   0.1      0.063   13.5   0.0    2.0  2  HTH_34          Winged helix DNA-binding domain
      0.013   15.0   0.0      0.023   14.2   0.0    1.4  1  Sigma70_r4      Sigma-70, region 4
       0.02   14.7   0.0      0.041   13.8   0.0    1.5  1  TrmB            Sugar-specific transcriptional regulator TrmB
      0.022   14.9   0.0      0.043   13.9   0.0    1.4  1  HTH_9           RNA polymerase III subunit RPC82 helix-turn-h
      0.022   14.8   0.0      0.044   13.8   0.0    1.5  1  HTH_Mga         M protein trans-acting positive regulator (MG
      0.028   13.8   0.1      0.049   13.1   0.1    1.3  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.044   13.8   0.0       0.08   13.0   0.0    1.4  1  HTH_3           Helix-turn-helix
      0.058   13.0   0.5      0.096   12.3   0.5    1.5  1  HTH_CodY        CodY helix-turn-helix domain
       0.07   13.1   0.0       0.12   12.3   0.0    1.4  1  HTH_36          Helix-turn-helix domain
      0.084   12.9   0.2       0.14   12.2   0.2    1.6  1  HTH_19          Helix-turn-helix domain
      0.085   12.6   0.1       0.17   11.6   0.1    1.5  1  HTH_DeoR        DeoR-like helix-turn-helix domain
        0.1   12.3   0.2        1.8    8.3   0.0    2.3  2  Crp             Bacterial regulatory proteins, crp family
       0.14   12.2   0.1       0.32   11.0   0.1    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
       0.15   12.3   0.0       0.28   11.4   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.6   1.3e-20   7.8e-18       5      48 .]       8      51 ..       4      51 .. 0.96

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 1.3e-20
      HTH_24  5 drkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                d+kIL lLq+n r+sqre+A+r+ lSps+vnrr+  Le++G+Ik
  CTQ27347.1  8 DKKILTLLQRNNRLSQREIADRISLSPSAVNRRIAALEDAGVIK 51
                9******************************************8 PP

>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.2   5.4e-18   3.2e-15       1      74 [.      70     143 ..      70     144 .. 0.93

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 5.4e-18
                     EEEEE-GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEE CS
  AsnC_trans_reg   1 vlvslepghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivle 74 
                     v+v++e+++ + lee ++++ ++p+V+++y+vtGd+d+ll + vrd++++e+++re + +  ++++++t + ++
      CTQ27347.1  70 VQVTIENERLDLLEEDKQRFVTCPQVQQVYYVTGDFDFLLVINVRDMAEYEALTRELFFASGNIKSFRTIVSMQ 143
                     6788885558889999999999*************************************************997 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   1.9   6.4e-17   3.8e-14       1      42 []       4      45 ..       4      45 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 6.4e-17
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   LD+ D+kIL +Lq++ R+s +e+A+r+ lS+s+v rR+++Le
     CTQ27347.1  4 LDAWDKKILTLLQRNNRLSQREIADRISLSPSAVNRRIAALE 45
                   89**************************************98 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1   2.6e-10   1.6e-07       7      48 ..      10      51 ..       9      59 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 2.6e-10
                HHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  7 viLrilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                +iL++l +++ ls+ e+a+++++s+s+v r + +Le++G i+
  CTQ27347.1 10 KILTLLQRNNRLSQREIADRISLSPSAVNRRIAALEDAGVIK 51
                69*************************************996 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.3   3.2e-10   1.9e-07       3      44 ..       9      49 ..       8      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 3.2e-10
      HTH_11  3 lqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                ++il+lL + ++ +s  e+A+++++S ++v r+I+aLe++gv
  CTQ27347.1  9 KKILTLL-QRNNRLSQREIADRISLSPSAVNRRIAALEDAGV 49
                5899999.66666***************************95 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.2   3.6e-10   2.1e-07      10      54 ..      11      53 ..       8      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 3.6e-10
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                +L  L r+ +  l+++e+a+r  ls+sav+r+++ L++aG +  +
  CTQ27347.1 11 ILTLLQRNNR--LSQREIADRISLSPSAVNRRIAALEDAGVIKGS 53
                5667888887..****************************99765 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   2.1e-09   1.3e-06      19      58 ..      18      55 ..       2      62 .. 0.81
   2 ?    1.0   0.0      0.73   4.4e+02      18      36 ..     107     125 ..      81     127 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 2.1e-09
                EEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEETEEEE CS
   HTH_Crp_2 19 elpltqeelAsmlGltretvsrilseLkreglisrgrrir 58
                + +l+q+e+A+++ l+++ v+r +++L+++g+i+ +  + 
  CTQ27347.1 18 NNRLSQREIADRISLSPSAVNRRIAALEDAGVIKGS--VS 55
                4589*****************************943..44 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.73
                 EEEEHHHHHHHHHTTSSHH CS
   HTH_Crp_2  18 ielpltqeelAsmlGltre 36 
                 + l ++ +++A++  ltre
  CTQ27347.1 107 FLLVINVRDMAEYEALTRE 125
                 446778899***9999998 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     7e-08   4.2e-05       6      45 ..      10      50 ..       9      51 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 7e-08
                HHHHHHTTSS.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  6 kILklLaege.lcvcelaeelglsqstvShHLkkLreaGLV 45
                kIL lL++++ l+  e+a+ + ls+s+v +  ++L++aG++
  CTQ27347.1 10 KILTLLQRNNrLSQREIADRISLSPSAVNRRIAALEDAGVI 50
                8*******555****************************98 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   9.9e-08   5.9e-05      14      56 ..      10      52 ..       9      55 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 9.9e-08
                HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 14 rilraLaraegltaselaerldlskntlsyHLrvLeeagLvev 56
                +il +L r+  l+  e+a+r++ls++ +++++++Le+ag +++
  CTQ27347.1 10 KILTLLQRNNRLSQREIADRISLSPSAVNRRIAALEDAGVIKG 52
                699999999999****************************986 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   5.8e-07   0.00034       8      49 ..      11      51 ..      10      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 5.8e-07
                HHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  8 iLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                iL +l + ++ l+ +e+A+r+ l++S+v R ++ L+  G ++
  CTQ27347.1 11 ILTLLQRNNR-LSQREIADRISLSPSAVNRRIAALEDAGVIK 51
                8999999999.9************************999875 PP

>> GYD  GYD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.4e-06    0.0026      36      83 ..      94     143 ..      92     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.4e-06
         GYD  36 kleslyatlGeyDvvvivEapDdetaaalslal.aasGtvrt.etlraft 83 
                 +++++y+++G++D++ ++++ D ++ +al  +l  asG++++ +t+  ++
  CTQ27347.1  94 QVQQVYYVTGDFDFLLVINVRDMAEYEALTRELfFASGNIKSfRTIVSMQ 143
                 689************************99988735899999988887776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   6.2e-06    0.0037      10      45 ..      11      48 ..       8      53 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.2e-06
      HTH_23 10 illllae..GlsvreIAreLgvsrrTvyrwlkryreeG 45
                il ll++  +ls+reIA++   s++ v r + + +  G
  CTQ27347.1 11 ILTLLQRnnRLSQREIADRISLSPSAVNRRIAALEDAG 48
                666777677********************999975466 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1     8e-06    0.0048      27      57 ..      22      51 ..       1      54 [. 0.89

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 8e-06
                   -HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE CS
  LexA_DNA_bind 27 sireiaralglkSpsaveehLkaLerKGyie 57
                   s reia+++ l+ psav+ + +aLe  G+i+
     CTQ27347.1 22 SQREIADRISLS-PSAVNRRIAALEDAGVIK 51
                   78*********7.****************96 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.3e-05    0.0077      21      47 ..      15      41 ..       2      43 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.3e-05
                  HHHTS---HHHHHHHHT--HHHHHHHH CS
  Sigma70_r4_2 21 lryleglsykEIAellgisegtVksrl 47
                  l + + ls++EIA ++ +s+++V++r+
    CTQ27347.1 15 LQRNNRLSQREIADRISLSPSAVNRRI 41
                  4556779******************98 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.7e-05    0.0099      19      56 ..      14      51 ..      10      54 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.7e-05
                HSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        Rrf2 19 keeeeepvsseeiaerqnispsylekilakLrkaglvk 56
                + ++++ +s +eia+r ++sps + + +a L+ ag++k
  CTQ27347.1 14 LLQRNNRLSQREIADRISLSPSAVNRRIAALEDAGVIK 51
                44445559****************************98 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.5   2.1e-05     0.013      13      40 ..      11      40 ..       9      42 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.1e-05
      HTH_38 13 IerllaeG..lslreIArrLgrspsTIsRE 40
                I +ll+++  ls+reIA r+  sps ++R 
  CTQ27347.1 11 ILTLLQRNnrLSQREIADRISLSPSAVNRR 40
                7788876557*****************995 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0    0.0001     0.063       4      51 ..      10      57 ..       9      75 .. 0.83
   2 ?   -0.3   0.0       2.1   1.2e+03       7      32 ..     109     134 ..     105     143 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.0001
      HTH_34  4 avlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYievdkefk 51
                ++l++L  +++ + +e+ + ++++ ++    + +Le+ag i+ + +++
  CTQ27347.1 10 KILTLLQRNNRLSQREIADRISLSPSAVNRRIAALEDAGVIKGSVSLV 57
                5899999*********************************99665544 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2.1
      HTH_34   7 syLasvdeadfvelkealeatdgnLs 32 
                  + ++ d a+++ l  +l   +gn+ 
  CTQ27347.1 109 LVINVRDMAEYEALTRELFFASGNIK 134
                 56677899999999999999999986 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.9e-05     0.023       4      41 ..       3      41 ..       1      44 [. 0.90

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.9e-05
                HS-HHHHHHHHHHH.TTT--HHHHHHHHTS-HHHHHHHH CS
  Sigma70_r4  4 sLpererevlelrf.geglTleEIgerlgiSrerVrqie 41
                +L++ ++++l+l      l++ EI++r  +S ++V +++
  CTQ27347.1  3 KLDAWDKKILTLLQrNNRLSQREIADRISLSPSAVNRRI 41
                788889999999999********************9997 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.8e-05     0.041      14      53 ..      12      51 ..       3      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.8e-05
                CHHHH.HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEE CS
        TrmB 14 YlaLl.klgpatadeiaeelgvprskvYevLrsLedkGlVe 53
                  +Ll ++ +++ +eia ++ ++ s v++ +  Led+G+++
  CTQ27347.1 12 L-TLLqRNNRLSQREIADRISLSPSAVNRRIAALEDAGVIK 51
                4.45549999****************************997 PP

>> HTH_9  RNA polymerase III subunit RPC82 helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.1e-05     0.043      17      51 ..      10      44 ..       7      46 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.1e-05
                HHHHHHHHHSSBEHHHHHHHHSSTHHHHHHHHHHH CS
       HTH_9 17 kVvetLlrkgrltlrelvkktkLsldqVkksLvvL 51
                k+ ++L r++rl+ re++ +++Ls++ V +  ++L
  CTQ27347.1 10 KILTLLQRNNRLSQREIADRISLSPSAVNRRIAAL 44
                89999***********************9877666 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.4e-05     0.044       7      47 ..       8      47 ..       2      54 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.4e-05
     HTH_Mga  7 klkLlelLteneksltldelakeLglseltlqsdiseLnel 47
                + k+l+lL   +++l+  e+a + +ls ++++ +i  L ++
  CTQ27347.1  8 DKKILTLLQR-NNRLSQREIADRISLSPSAVNRRIAALEDA 47
                6799999999.*************************99875 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   8.1e-05     0.049      16      49 ..       7      42 ..       5      44 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.1e-05
  HTH_Tnp_ISL3 16 leayilellles..rsvkavArqlgvSwtTVwrild 49
                  ++ +il+ll+++   s +++A++  +S++ V+r++ 
    CTQ27347.1  7 WDKKILTLLQRNnrLSQREIADRISLSPSAVNRRIA 42
                  7899*****************************985 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00013      0.08       9      29 ..      20      40 ..      13      46 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00013
                THHHHHHHHHHTSSHHHHHHH CS
       HTH_3  9 glsqeeLAeklGvsrstisri 29
                 lsq+e+A+++ +s+s+++r 
  CTQ27347.1 20 RLSQREIADRISLSPSAVNRR 40
                59****************995 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   0.00016     0.096       4      35 ..      20      51 ..      17      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
    HTH_CodY  4 rLtaskiaDriGitrsvivnaLrkLesaGiie 35
                rL   +iaDri +  s +   +  Le aG+i 
  CTQ27347.1 20 RLSQREIADRISLSPSAVNRRIAALEDAGVIK 51
                788899*************************7 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0002      0.12      27      55 .]      22      50 ..      11      50 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0002
      HTH_36 27 sqetlakrlglsknTvsraikeLeqlGyi 55
                sq+ +a r  ls + v r i+ Le++G i
  CTQ27347.1 22 SQREIADRISLSPSAVNRRIAALEDAGVI 50
                99************************976 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   0.00024      0.14       7      34 ..      15      46 ..      10      90 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00024
      HTH_19  7 aReelgltqeelaerlgis....rskisaiEn 34
                + +++ l+q+e+a+r++ s     ++i+a+E 
  CTQ27347.1 15 LQRNNRLSQREIADRISLSpsavNRRIAALED 46
                678999*************9999999999994 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00029      0.17       3      45 ..       9      51 ..       8      58 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00029
    HTH_DeoR  3 eqilellkqqgklsveelvellgvSeaTiRRDLneLeeqgllt 45
                ++il ll++   ls  e++++   S+  + R ++ Le +g+++
  CTQ27347.1  9 KKILTLLQRNNRLSQREIADRISLSPSAVNRRIAALEDAGVIK 51
                79**************************************974 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0     0.003       1.8       2      32 .]      20      50 ..      20      50 .. 0.94
   2 ?    1.7   0.0      0.33     2e+02       7      17 ..     115     125 ..     114     126 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.003
                E--HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
         Crp  2 pmSRqdIAdylGlTrETVSRlLtrLrekGLI 32
                ++S  +IAd + l++  V+R    L+  G+I
  CTQ27347.1 20 RLSQREIADRISLSPSAVNRRIAALEDAGVI 50
                799*****************99999999998 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.33
                 HHHHHHTS-HH CS
         Crp   7 dIAdylGlTrE 17 
                 d A+y +lTrE
  CTQ27347.1 115 DMAEYEALTRE 125
                 89********9 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00053      0.32      20      39 ..      27      46 ..      13      48 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00053
                HHHHTS-HHHHHHHHHHHHH CS
       HTH_1 20 AeeLglsqpavsrqikrLEe 39
                A++  ls++av r+i++LE+
  CTQ27347.1 27 ADRISLSPSAVNRRIAALED 46
                89999**************8 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00047      0.28      12      52 ..      10      50 ..       8      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00047
                    HHHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
  Fe_dep_repress 12 tIYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyv 52
                     I+tl   ++  ++ ++a r+  sps V   +  Le++G +
      CTQ27347.1 10 KILTLLQRNNRLSQREIADRISLSPSAVNRRIAALEDAGVI 50
                    6899999999999************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1300.75
//
Query:       CTQ27348.1  [L=59]
Description: hypothetical protein CH1034_180035 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       180  (0.0100396); expected 358.6 (0.02)
Passed bias filter:                      159  (0.00886831); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 449.39
//
Query:       CTQ27349.1  [L=403]
Description: 2,3-diaminopropionate ammonia-lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-51  175.4   0.0    1.9e-51  175.2   0.0    1.1  1  PALP             Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
       0.38   10.9   0.1       0.38   10.9   0.1    1.9  2  Phage_holin_3_3  LydA holin phage, holin superfamily III


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.2   0.0   2.2e-55   1.9e-51       3     293 ..      40     384 ..      38     385 .. 0.90

  Alignments for each domain:
  == domain 1  score: 175.2 bits;  conditional E-value: 2.2e-55
                 GCSSS--EEEECCTCCCCCCE.EEEEEGGGS.TTSBTTHHHHHHHHHH.....HHTT..................TTTSEEEEEBSSHHHHHHHHHHHH CS
        PALP   3 lgigpTPlvrlprlskelgvp.lflKlEsln.ptgSfKdRgaeyllar.....lkeg..................tgaktvveassGNhgralAaaaal 76 
                 + ++ TPl++l+ ls++lg   + +K+E  +  + +fK +g +y++ +     l e                    +  + v+a++GNhgr++A+aa  
  CTQ27349.1  40 PDYRVTPLRKLEFLSQRLGLGsIHIKDEAQRfGLNAFKGLGGSYAMGKylaalL-ERdintlsfaelnspvikarIKDIVFVTATDGNHGRGVAWAAEQ 137
                 67899**************************66***************988752.3358888888889999999889999******************* PP

                 HT-EEEEEEETTS-HHHHHHHHHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTT.......SHHHHHHHHTHHHHHHHHTT....TTEEEEEEE CS
        PALP  77 lGlkvtivvpadaspekvallrllGaevvevggdydeavaaaaelaaegegaylvsqfd.......nptviegygtiglEileqlg....gkpdavvvp 164
                 lGl++++++p+++sp +++ +r++Gae++ ++ +yd++v++aa+ a+e +g++l++++          ++++gy t++ Ei++ql       p++++++
  CTQ27349.1 138 LGLRAVVYMPKGSSPVRAQNIRRHGAECTITELNYDDTVRLAAKTARE-QGWVLLQDTAwqgyeqiPTWIMQGYMTLAVEIWQQLAesgaSMPTHLFLQ 235
                 ************************************************.**********9887775555*************99999999********* PP

                 -SSSHHHHHHHHHHHHHSTT..-EEEEEEECTTCGGTTCCS..S.SS..B....SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHH.. CS
        PALP 165 vGgGgliaGiaaglkerrpd..vrvigvepegsdalarslragrrvtvpvs...dtiadglavgspselafelldrlvdeivtvsdeealeamrlla.. 256
                 +G+G++++ i+ ++ e+ ++  +++i+vep  +++l rs+  ++ ++ +v+   +t++ gla+g+p    +++l+++ + +++ +d  a+ +mrlla  
  CTQ27349.1 236 AGVGSFAGSIMGYFIEKMQQqaPTIIIVEPHKANCLFRSATINDGLPHSVGgdmSTLMAGLACGEPNITSWPMLRDHATCFISADDCLAANGMRLLAap 334
                 ****************666566******************55554444444779********************************************* PP

                 ...HHHSB-B-HHHHHHHHHH..........HHHHHHCCTTCEEEEEEE- CS
        PALP 257 ...rregivvepssaaalaal..........klreagelkegdrvvvilt 293
                    ++e  v ++s+a++  +l          +l+e  +l+++++v++i t
  CTQ27349.1 335 rpgTDEPFVSGESGAIGTGVLyalmtqpayrELAESLRLNADAQVLLIST 384
                 **9999999999***99888877778888888888888888877777766 PP

>> Phage_holin_3_3  LydA holin phage, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   4.3e-05      0.38      16      58 ..     217     259 ..     213     263 .. 0.82
   2 ?   -3.1   0.3         1     9e+03      62      76 ..     343     357 ..     342     359 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.3e-05
  Phage_holin_3_3  16 lmrakkgrrrfsikellleivvSgfvGllvfllceelglsqll 58 
                      ++++ +++  +  ++l+l+++v+ f+G + +++ e +++++++
       CTQ27349.1 217 IWQQLAESGASMPTHLFLQAGVGSFAGSIMGYFIEKMQQQAPT 259
                      566666666777789**********************998876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1
  Phage_holin_3_3  62 iaglsGylGaralia 76 
                      ++g sG++G+ +l a
       CTQ27349.1 343 VSGESGAIGTGVLYA 357
                      566777788777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2847.58
//
Query:       CTQ27350.1  [L=429]
Description: putative serine transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-14   52.1  27.3    6.7e-14   51.7  27.3    1.1  1  Trp_Tyr_perm  Tryptophan/tyrosine permease family
  ------ inclusion threshold ------
       0.33   10.6   0.0       0.33   10.6   0.0    3.6  4  DUF3961       Domain of unknown function (DUF3961)
        1.3    8.6   6.6        3.1    7.4   1.1    3.0  3  Saf_2TM       SAVED-fused 2TM effector domain
        1.8    8.6   4.7        4.3    7.4   0.1    3.4  3  MNSV_P7B      Melon necrotic spot virus P7B protein


Domain annotation for each model (and alignments):
>> Trp_Tyr_perm  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7  27.3   1.5e-17   6.7e-14      13     306 ..      30     333 ..      23     421 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 1.5e-17
  Trp_Tyr_perm  13 agtviGaGmlalPvatagagfipsllllilswvlmlasgllllEvllaake.easfttlakkllGkkgniivalvllfllyiLlvAyisggGsilse 108
                    gt+iGaG+l lP+ +   gf p l++++l+  +  ++   l+  +   ++ e+s+t++  + +G  +  + ++ + f +y +l+ y  ++ +  ++
    CTQ27350.1  30 FGTAIGAGVLFLPINAGIGGFWPLLIVFVLAFPITYLAHRGLARFIYSSNTpESSITDVIGEHFGALAGKVFTVIYFFAVYTILIMYAVAITNTAQS 126
                   69************987777777777777666666666666666666555569******************************************** PP

  Trp_Tyr_perm 109 lleeasgialsarlavliftlv.lgalvvlstkavdrinrvllflklvafvlllalllskvksdvLls.....aksdtskvslvlsalPvlllsfGF 199
                    + ++  +a ++r  v+i+ ++ l ++v ++ +++ r+ + l+   +++++++  +l+++ ++++L +     ++  +  +  + +++Pvl++sf +
    CTQ27350.1 127 FITHQLAMAEPPRSLVAIVLILgLMFIVRFGQHLIMRVMSTLVYPFIISLIFMALFLIPHWNGAILQTvsfsaTGDGQGIMLSLWMTFPVLVMSFNH 223
                   ******999888888888777624555667777*********************************998877433344445556699********99 PP

  Trp_Tyr_perm 200 hgivpslv....kyldkn..vkkvkkailiGtliaLvlyllWelivlGnlpreelariiakggnldtlveallelleskslelavelFsflAlatSf 290
                     i+  +v    + ++    + k  +   +G l+  v++l+  l+ + +l+ ++la+++a++    +++  l +    ++++ +  + +f+A+  Sf
    CTQ27350.1 224 YPIISPMVvrqkQRYGLAlaEGKCAQIQRYGILLMTVVVLFFVLSCVLSLSPQQLAEAKAQN---LSILSYLANQYDTPIIAWLSPIIAFVAITKSF 317
                   9888766622222344442244555556689999999999999999999********99998...77889999999********************* PP

  Trp_Tyr_perm 291 lGvalglfdyladlfk 306
                   lG  +g  + l dl  
    CTQ27350.1 318 LGHYIGAYESLRDLIL 333
                   ***********99864 PP

>> DUF3961  Domain of unknown function (DUF3961)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   7.3e-05      0.33      13      32 ..      21      41 ..      19      44 .. 0.85
   2 ?   -5.0   1.4         4   1.8e+04      17      24 ..     105     112 ..     103     118 .. 0.55
   3 ?   -1.1   0.1      0.34   1.5e+03      19      33 ..     253     266 ..     243     269 .. 0.61
   4 ?   -1.2   0.2      0.38   1.7e+03      28      35 ..     352     359 ..     349     361 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.3e-05
     DUF3961 13 eDrvWFYGFYGiAvSi.VLFm 32
                eD vW  G +G+A+   VLF+
  CTQ27350.1 21 EDTVWVLGLFGTAIGAgVLFL 41
                8*************6448885 PP

  == domain 2  score: -5.0 bits;  conditional E-value: 4
     DUF3961  17 WFYGFYGi 24 
                 +F+  Y i
  CTQ27350.1 105 YFFAVYTI 112
                 45555544 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.34
     DUF3961  19 YGFYGiAvSiVLFmV 33 
                 YG   +   +VLF V
  CTQ27350.1 253 YGILLMT-VVVLFFV 266
                 3333333.3678877 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.38
     DUF3961  28 iVLFmVFv 35 
                 i +FmV +
  CTQ27350.1 352 ILVFMVLT 359
                 788***87 PP

>> Saf_2TM  SAVED-fused 2TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.1   0.00069       3.1      46      81 ..     120     155 ..      97     167 .. 0.78
   2 ?    2.7   0.2      0.02        88      32     101 ..     216     284 ..     207     305 .. 0.73
   3 ?    0.8   0.4     0.072   3.2e+02      70     100 ..     256     283 ..     246     329 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00069
     Saf_2TM  46 alklaggslevsfssseipeivlaiilvigvllivv 81 
                 ++++a+ +++ ++ ++e+p  ++ai+l++g ++iv 
  CTQ27350.1 120 ITNTAQSFITHQLAMAEPPRSLVAIVLILGLMFIVR 155
                 34566899*************************995 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.02
     Saf_2TM  32 lllailgtdwalkialklaggslevsfssse..ipeivlaiilvigvllivvGavllilryvneakrqskkk 101
                 +l+ ++    +++ ++  ++++  +++ + +   ++   ++++++ vl++v++ vl+++     +  ++k++
  CTQ27350.1 216 VLVMSFNHYPIISPMVVRQKQRYGLALAEGKcaQIQRYGILLMTVVVLFFVLSCVLSLSPQ---QLAEAKAQ 284
                 6666666677777777778888888888887555666677777888999999999988755...33444444 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.072
     Saf_2TM  70 iilvigvllivvGavllilryvneakrqskk 100
                 +++++ vl++v++ vl+++     +  ++k+
  CTQ27350.1 256 LLMTVVVLFFVLSCVLSLSPQ---QLAEAKA 283
                 334444444444444443322...2222222 PP

>> MNSV_P7B  Melon necrotic spot virus P7B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.22   9.8e+02      20      36 ..      53      70 ..      47      87 .. 0.75
   2 ?   -0.1   0.1      0.21   9.3e+02       8      26 ..     198     216 ..     167     223 .. 0.81
   3 ?    7.4   0.1   0.00095       4.3      19      36 ..     260     277 ..     251     288 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.22
    MNSV_P7B 20 lfisfvl.fyitslspqG 36
                l+i fvl f it l+ +G
  CTQ27350.1 53 LLIVFVLaFPITYLAHRG 70
                677788758899998887 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.21
    MNSV_P7B   8 sspGdysGallilfisfvl 26 
                 s+ Gd  G +l l+++f +
  CTQ27350.1 198 SATGDGQGIMLSLWMTFPV 216
                 6678888888888888754 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.00095
    MNSV_P7B  19 ilfisfvlfyitslspqG 36 
                 ++ + fvl ++ slspq 
  CTQ27350.1 260 VVVLFFVLSCVLSLSPQQ 277
                 445679**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2994.78
//
Query:       CTQ27351.1  [L=412]
Description: N-carbamoyl-L-amino acid hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-34  116.9   0.3    1.3e-33  116.5   0.3    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    3.4e-08   33.4   0.1    7.4e-08   32.3   0.0    1.6  2  Peptidase_M28  Peptidase family M28
  ------ inclusion threshold ------
      0.021   14.8   1.5       0.11   12.5   0.1    2.7  3  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   0.3   2.1e-37   1.3e-33       1     206 [.      79     405 ..      79     406 .. 0.92

  Alignments for each domain:
  == domain 1  score: 116.5 bits;  conditional E-value: 2.1e-37
                    EEEEES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.....THHHHHHH......HH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxx......xx RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.....gGakalle......gl 85 
                    ++gsH+D+V     +g           G ++G       +gv+a+le++++l+d+gi++++++ ++f+++EEg r     +G+  +++        
     CTQ27351.1  79 MMGSHIDTVA----TG-----------GLYDGN------YGVMAGLEVIATLQDAGIRTRRPLAVTFFTNEEGVRfqpdmMGSVVFAGeyplaqA- 152
                    679*******....56...........777777......*********************************98899999888777776554441. PP

                    HT..........................TTCESEEEEEEEESSSBTCHSTETEEEE........................................ CS
                    xx..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................ RF
  Peptidase_M20  86 ee..........................rekvdavfelhieepgileagklaigvv........................................ 115
                                                + +vd ++elhie+++il++++++igvv                                        
     CTQ27351.1 153 -LaakdldgitldealrnigykgerqpgDMAVDSYVELHIEQGPILDKEQIDIGVVtgvqgiswqeftlrgvsnhagttpmsmrrdaglaaakiav 247
                    .04456777777899999999999999999****************************************************************** PP

                    ..................................................................EEEEEEE..EEESHEEECCHHHHHHHHHHH CS
                    ..................................................................xxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 116 ..................................................................kvevell..eggapvtlndsplvkalaeaa 143
                                                                                       ve++ +   + +pv +  +++v+a+++ a
     CTQ27351.1 248 farelalslggnqvatvghfsvkpnlinvipnhvvmsvdlrntdnailclaeqqlaefvaktsqeeGVEITSRslVRFNPVIFA-DEIVNAVEAEA 342
                    *****************************************************************648888777799999**99.*********** PP

                    HHHHTSCEEEEEESSSBHTHHHHTTT.EEEEEEESS.GGCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 144 eelfgekvelivsgpggtdarffagi.ptvmifgpg.sglaHspnEyvdledlekgikvlarlle 206
                    e++  +++++ +sg +g+da+f+a + p+ mif+p+ +g++H+++E+   +dl +g++vl ++++
     CTQ27351.1 343 ERQ-ALSYRRLPSG-AGHDAQFMASVcPAGMIFVPCvDGISHNVKEHSAAKDLIAGANVLLQVVL 405
                    **9.788*******.********9999*********77***********************9986 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   1.2e-11   7.4e-08       1     105 [.      64     166 ..      64     193 .. 0.88
   2 ?   -3.1   0.0      0.87   5.2e+03      36      61 ..     290     313 ..     289     318 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.2e-11
                    EEEEEESTTCESEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSG.....SSHHHHHHHHHHCCCTTE CS
  Peptidase_M28   1 NviatlegkatdevlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEa.....gllGSkafakakpelkki 91 
                    Nv + + g++t   +++g+H+D+v++       G  D   gv+a Le++ +l++ g r +r + + ff+ EE       ++GS  fa  + +l++ 
     CTQ27351.1  64 NVTGVYHGEETLPMVMMGSHIDTVAT---G---GLYDGNYGVMAGLEVIATLQDAGIRTRRPLAVTFFTNEEGvrfqpDMMGSVVFA-GEYPLAQA 152
                    89999999997779***********7...6...9***************************************9999999******9.77788888 PP

                    EEEEEECS-SSSS- CS
  Peptidase_M28  92 aavlnlDmvgsggk 105
                     a  +lD +   + 
     CTQ27351.1 153 LAAKDLDGITLDEA 166
                    88888888876655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.87
                    TTTHHHHHHHHHHHHHCHHGGCCSSE CS
  Peptidase_M28  36 dDnAsgvaalLelarvlaasgsrpkr 61 
                    +DnA  + a  +la+++a+ +   + 
     CTQ27351.1 290 TDNAILCLAEQQLAEFVAKTS--QEE 313
                    799999999999999999833..344 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.8e-05      0.11       2     103 ..     209     308 ..     208     313 .. 0.78
   2 ?   -0.6   0.0      0.21   1.3e+03      82     108 ..     323     349 ..     318     350 .. 0.87
   3 ?   -1.4   0.1      0.36   2.1e+03      14      39 ..     382     407 ..     378     411 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.8e-05
                 EB-EEEEEEEEEE-B-EEGG.-TTTTB-.HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-C.CCCEESSEEEEEEEEEHHHHHHHHHHHHHH CS
   M20_dimer   2 ghkGlaggkitvkgkagHsg.apgagaN.AieklarllaeledeegdiaeerslprttlnvtgiegGs.aknvipdeaeakidiRllpgedpeevleei 97 
                 g  G+ + + t +g++ H+g  p  ++  A  ++a++    +++  + +     +    +v++++     +nvip ++ +++d+R  ++  +  +++++
  CTQ27351.1 209 GVQGISWQEFTLRGVSNHAGtTPMSMRRdAGLAAAKIAVFARELALSLG-----GNQVATVGHFSVKPnLINVIPNHVVMSVDLRNTDNAILCLAEQQL 302
                 7789*****************9999987577777777777777755433.....66777777777777999**************88887766666666 PP

                 HHHHTS CS
   M20_dimer  98 eeilek 103
                 +e+++k
  CTQ27351.1 303 AEFVAK 308
                 666655 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.21
                 EEHHHHHHHHHHHHHHHHHHTSCCSTT CS
   M20_dimer  82 iRllpgedpeevleeieeilekeaped 108
                 +R++p   ++e+ +++e+ +e++a ++
  CTQ27351.1 323 VRFNPVIFADEIVNAVEAEAERQALSY 349
                 79999999999*****99999988765 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.36
                 E-B-EEGG-TTTTB-HHHHHHHHHHC CS
   M20_dimer  14 kgkagHsgapgagaNAieklarllae 39 
                 ++++ Hs+a++  a A+ +l  +l++
  CTQ27351.1 382 HNVKEHSAAKDLIAGANVLLQVVLQR 407
                 67888***********9888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3030.73
//
Query:       CTQ27352.1  [L=388]
Description: putative peptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-30  104.1   0.4    1.1e-29  103.7   0.4    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    6.8e-06   26.0   0.2    3.2e-05   23.8   0.2    2.0  2  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   0.4   1.2e-33   1.1e-29       1     206 [.      68     382 ..      68     383 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 1.2e-33
                    EEEEES-BSS.TTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEE CS
                    xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVp.eeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdav 94 
                    ++++++D+   +e+  +w   +++ +   +++G+G+d+++++ l+a+++l +  ++++  +gt+ ++fqp+EE g  Ga+a+++ g+ er++++ +
     CTQ27352.1  68 AIRADIDAIQlTEQG-DW--SYRSMTA-ERMHGCGHDGHTCIALGAAQLLLQ--RQNF--NGTVCFVFQPAEEPG-YGARAMMDdGVIERFGIEEI 154
                    589*******87777.89..8888866.8*********************65..5553..9************55.********777799****** PP

                    EEEEEESSSBTCHSTETEEEE........................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxx........................................................................... RF
  Peptidase_M20  95 felhieepgileagklaigvv........................................................................... 115
                    ++lh + pg++  g++a +v+                                                                           
     CTQ27352.1 155 YGLHNM-PGMKA-GTIATRVGgimasednfiirikgqgahaarphmakdplviaaeiilalqtivsrnvdpnvpavisctelhtdgirnaipthve 248
                    ****99.99999.*********************************************************************************** PP

                    .................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSC.EEEEEES.SSBHTHHHH.TTTE.EEEE CS
                    .................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxx.xxxx.xxxx RF
  Peptidase_M20 116 .................................kvevelleggapvtlndsplvkalaeaaeelfgek.velivsg.pggtdarff.agip.tvmi 174
                                                     +++++ + ++ ++t+n +++v+++  aa +++g + v+  v + ++++d++ f ++ip ++++
     CTQ27352.1 249 ikgdtrsfapevqmlleermrtiseaicamhgaTCQFS-YTHEFAPTVNWQQCVDVAVTAAINVVGAEkVDGNVAQmMISEDFGAFlQKIPgCFIF 343
                    ********************************879999.889999********************87736555888**********9999978899 PP

                    EESSG.....GCTTSTTTEEE..HHHHHHHHHHHHHHHH CS
                    xxxxx.....xxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
  Peptidase_M20 175 fgpgs.....glaHspnEyvd..ledlekgikvlarlle 206
                    +g g+     g+   +n  +d  +e l +g++++a++++
     CTQ27352.1 344 LGNGDssdaqGNTPLHNACYDfnDEILLTGAEYFAEVVR 382
                    99884467875555577777777************9986 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.2   3.6e-09   3.2e-05       9      89 ..     182     261 ..     180     279 .. 0.82
   2 ?   -1.3   0.0      0.23   2.1e+03      75      98 ..     282     305 ..     280     314 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.6e-09
                 EEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEE.HHHHHH CS
   M20_dimer   9 gkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiR.llpged 89 
                 + i++kg+++H++ p+ + +++ ++a+++ +l+   +++    +  +  +++t+++    +n+ip ++e k d R + p+ +
  CTQ27352.1 182 FIIRIKGQGAHAARPHMAKDPLVIAAEIILALQTIVSRNV--DPNVPAVISCTELHTDGIRNAIPTHVEIKGDTRsFAPEVQ 261
                 6799*******************************88866..66666777777777777****************8777655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.23
                 EEEEEEEEEHHHHHHHHHHHHHHH CS
   M20_dimer  75 eaeakidiRllpgedpeevleeie 98 
                 +++++++  + p+ +++++ +  +
  CTQ27352.1 282 TCQFSYTHEFAPTVNWQQCVDVAV 305
                 7999**********9999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2997.06
//
Query:       CTQ27353.1  [L=412]
Description: nicotinate phosphoribosyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-82  275.1   0.0      8e-82  274.5   0.0    1.3  1  NAPRTase    Nicotinate phosphoribosyltransferase (NAPRTase) f
    1.1e-35  122.7   0.0    1.9e-35  121.9   0.0    1.4  1  NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N


Domain annotation for each model (and alignments):
>> NAPRTase  Nicotinate phosphoribosyltransferase (NAPRTase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.5   0.0     9e-86     8e-82       1     239 [.     181     405 ..     181     407 .. 0.99

  Alignments for each domain:
  == domain 1  score: 274.5 bits;  conditional E-value: 9e-86
                 GSEEE-TSTTSSSHHHHHHHHHHHHHHHTTTEEEESBHHHHHHHT--B--HHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHCCHIIEEECHCCTH CS
    NAPRTase   1 fklhDFGtRrrsslesqeivvkalkkahlvnflGtdnvlaaakysikaaetsahealgkeqelsafrnnlkqfqkdaldlwvaiekgnlgiaLtdlvlt 99 
                 f+l+DFGtRrr+s+e+qe +v++l++  + +f+Gt+n+++a+++++++++t+ahe+++++q++s+    l+ +q++al +w++++ ++lgiaLtd++++
  CTQ27353.1 181 FRLMDFGTRRRFSREVQEGIVRRLQQ--EPWFVGTSNYDLARRLNLTPMGTQAHEWFQAHQQISP---SLASSQRAALAAWLEEYPDQLGIALTDCITM 274
                 89********************9999..9************************************...******************************* PP

                 HHHHCCS-CC.HHHSEEEEE-SS-HHHHHHHHHHHHHCTCTTTCCCSEEEEESS-SHHHHHHHHHHHHHTTCEEEEEESHHHHSSECTTCTTTCCEEEE CS
    NAPRTase 100 daflkdfrle.akaylgvRpDSGdpvevieklaahygstlnskgytkrlifsDgldvekiieilealkkkgfniaFGiGtnltqdlnrdtlefavkasa 197
                 dafl+df  e a +y+g+R+DSGdpve++ek++ahy+++ ++++ +k+l+fsD+ld+ k++ +++++ + +++++FGiGt+lt+dl++        +++
  CTQ27353.1 275 DAFLRDFGPEfATRYQGLRHDSGDPVEWGEKAIAHYQKL-GIDPLSKVLVFSDNLDLAKAVDLYRHFAS-RVKLSFGIGTRLTCDLPQ--------VKP 363
                 ***************************************.*****************************.******************........*** PP

                 EEEEEEEEEETTEETTBGGSSCCGSBGSGHHHHHHHHHHCTT CS
    NAPRTase 198 lniviklvevnkdpvakisdrskkgrlgdkefvkllrtvfkn 239
                 lniviklve+n++pvak+sd+++k++++dk+fv+ lr+ f+ 
  CTQ27353.1 364 LNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALREAFDL 405
                 ****************************************97 PP

>> NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   0.0   2.2e-39   1.9e-35       1     125 []      25     142 ..      25     142 .. 0.99

  Alignments for each domain:
  == domain 1  score: 121.9 bits;  conditional E-value: 2.2e-39
  NAPRTase_N   1 LdtDlYkltmaqavfkkgpdvevvfelffRkkpfkgeyaivagleevieylenlrfteeeieyLkrklpyfkedfleyLrtfrfkpsevaveeeevvfp 99 
                 LdtD Ykl+m+qavf+ + dv+v  e+ +R ++   +  ++++++e++e +++lr+ ++e+++L+ +lp+f++d+l++Lr+fr++ps+v+v+++    +
  CTQ27353.1  25 LDTDAYKLHMQQAVFHRYGDVHVAAEFRCRGDD--LLGIYADAIREQVESMRDLRLRDDEYRWLS-TLPFFRQDYLNWLRDFRYDPSQVTVSND----N 116
                 8********************************..99999************************9.***************************9....8 PP

  NAPRTase_N 100 gepeirveGpwieaillEtplLaivn 125
                 g+++ir +Gpw eai++E+plLa+++
  CTQ27353.1 117 GKLNIRLTGPWREAIMWEVPLLAVIS 142
                 ************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2979.31
//
Query:       CTQ27354.1  [L=871]
Description: aminopeptidase N [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.4e-121  403.6   9.6   9.3e-121  403.1   9.6    1.2  1  DUF3458_C       Domain of unknown function (DUF3458_C) ARM re
    2.1e-55  187.6   1.6    3.7e-55  186.8   1.6    1.4  1  Peptidase_M1    Peptidase family M1 domain
    2.7e-33  114.3   0.7    1.3e-32  112.1   0.4    2.2  2  DUF3458         Domain of unknown function (DUF3458) Ig-like 
    3.1e-16   60.1   0.0      1e-15   58.5   0.0    1.8  2  Peptidase_M1_N  Peptidase M1 N-terminal domain
  ------ inclusion threshold ------
      0.014   15.3   0.0      0.053   13.5   0.0    1.9  1  Ovate           Transcriptional repressor, ovate
      0.046   14.0   0.2        1.4    9.2   0.0    3.2  3  DUF2063         Putative DNA-binding domain
      0.093   12.5   0.1          6    6.7   0.3    2.5  2  XPC-binding     XPC-binding domain
       0.13   12.6   1.0       0.31   11.4   0.4    1.9  2  PMEI            Plant invertase/pectin methylesterase inhibit
       0.17   11.2   0.0         12    5.1   0.0    2.3  2  DNA_methylase   C-5 cytosine-specific DNA methylase


Domain annotation for each model (and alignments):
>> DUF3458_C  Domain of unknown function (DUF3458_C) ARM repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.1   9.6  4.7e-124  9.3e-121       1     319 []     549     871 .]     549     871 .] 0.98

  Alignments for each domain:
  == domain 1  score: 403.1 bits;  conditional E-value: 4.7e-124
                 HHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHH.....TT----HHHHHHHHHHHT-TTS-HHHHHHHTS---HHHHCTT-SSB-HHHHHHHHHHHHH CS
   DUF3458_C   1 deelafLlahdsDafnRweagqrLalrvllalva.....eeaalsealvealravLedealdpalkaeaLtlPseaelaeqlkevdpdaihaarealrk 94 
                 d++l+fL++h++++f+Rw+a+q+L+  ++  +v+     ++++l+ ++++a+ra+L de++dpal+ae+LtlPs +e+ae ++ +dp ai+a+real++
  CTQ27354.1 549 DQQLTFLMRHARNDFSRWDAAQSLLATYIKLNVNrhqqgQPLSLPVHVADAFRAILLDEKIDPALAAEILTLPSANEIAEMFAIIDPIAIAAVREALTR 647
                 689******************************6667789*********************************************************** PP

                 HHHHHTHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHSSSHHHHHHHHHHHTTSSSHHHHHHHHHHHHHCTTSHH CS
   DUF3458_C  95 alaealedellalyealaaegayspdaaaagrRaLknlaLsylaaaddeeaaelavaqfkaadnmTdrlaALaalvnsdlpereealadfyqrwkdeal 193
                 +la++l+de+la+y+a++ + +y++++a++g+RaL+n++L+yla a+ +   +l+++q+++adnmTd+laAL+a+v ++lp+r++++++++++w+++ l
  CTQ27354.1 648 TLANELADEFLAVYNANKLD-SYRVEHADIGKRALRNTCLRYLAFAEPTLGDKLVATQYHQADNMTDALAALSAAVAAELPCRDALMQEYDDKWHQDGL 745
                 ****************9995.8************************8888888888******************************************* PP

                 HHHHHHHHHHH--STTHHHHHHHHHTSTTTTTTSHHHHHHHHHHHH.T-HHHHT-TTSHHHHHHHHHHHHHHTT-HHHHHHHGGGGTTGGGB-HHHHHH CS
   DUF3458_C 194 vldkWfalqAtspredtlervkallehpaFdlknPNrvrsLigaFaaanpaaFhaadGsGYafladqvleldaiNpqvAaRlvtaltrwrrydekrqal 292
                 v+dkWf lq+tsp+++++e+v+ ll+h++F+++nPNrvrsLigaFa++npaaFha+dGsGY+fl+++++el+++NpqvA+Rl+++l+r +rydekrqal
  CTQ27354.1 746 VMDKWFILQSTSPAANVVETVRGLLNHRSFSMSNPNRVRSLIGAFASSNPAAFHAEDGSGYQFLVEMLTELNQRNPQVASRLIEPLIRLKRYDEKRQAL 844
                 *************************************************************************************************** PP

                 HHHHHHHHHTSTT--HHHHHHHHHHHC CS
   DUF3458_C 293 mkaaLeriaaaeelSkdvrEivskala 319
                 m+aaLe+++  e+lS d++E++skala
  CTQ27354.1 845 MRAALEQLKGLENLSGDLFEKISKALA 871
                 *************************96 PP

>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.8   1.6   1.9e-58   3.7e-55       1     214 [.     226     437 ..     226     441 .. 0.94

  Alignments for each domain:
  == domain 1  score: 186.8 bits;  conditional E-value: 1.9e-58
                   HHHHHHHHHHHHHHHHHTS--SSSEEEEEEESSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHH CS
  Peptidase_M1   1 yalevtkkllefleeyfkvpYplpkldlvalpdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEG 97 
                   +a+   k+ +++ ee+f+++Y+l+ +++va++ f++gAMEn+gl +++++++l+  ++++++d+ ++++vi HE++H+W+Gn Vt++ W +l L+EG
    CTQ27354.1 226 WAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNVFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEG 322
                   7899999****************************************************************************************** PP

                   HHHHHHHHHHHHHSCCCHCHHHHHHHCHHHHHHHHTSTTHHHSSGG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHCTTEEE CS
  Peptidase_M1  98 fatyleylildklepewevseqllleeveealsedaldeshpitqevekpseidevFdsiaYeKGasllrmlekllgeevFqkglksYlkefkykna 194
                   ++++ +++++++l + +  + + + +++  +++eda+ ++hpi  + +   e++++++ ++YeKGa+++rml++llgee+Fqkg++ Y+++++ ++a
    CTQ27354.1 323 LTVFRDQEFSSDLGSRAVNRINNVRTMRGLQFAEDASPMAHPI--RPDMVIEMNNFYTLTVYEKGAEVIRMLHTLLGEENFQKGMQLYFERHDGSAA 417
                   *************994443444457788899************..5788899********************************************* PP

                   -HHHHHHHHHHCCCSCHHTH CS
  Peptidase_M1 195 etedlwdaleealnkdisev 214
                   +++d+++a+e+a+n d+s++
    CTQ27354.1 418 TCDDFVQAMEDASNVDLSHF 437
                   **************999987 PP

>> DUF3458  Domain of unknown function (DUF3458) Ig-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.4   6.3e-36   1.3e-32       1      95 []     445     546 ..     445     546 .. 0.97
   2 ?   -1.0   0.0       1.2   2.5e+03      31      45 ..     583     597 ..     564     634 .. 0.70

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 6.3e-36
                 S--EEEEEEEEETTTTEEEEEEEEE---BSSBSS-----EEEEEEEEETTS-BECE.......EEEEEE-SSEEEEEEC---S-EEEEESTT--SSSEE CS
     DUF3458   1 GtPevtvsesydeaaktytltlsQktpptagqkekkplviPiklalldekGeelel.......ekvlelteaeqsftfenvaekpvpSllrdFSAPvkl 92 
                 GtP vtv+++y++++++ytlt+sQ+tppta+q+ek+pl+iP++++l+d++G+ ++l       + vl++t+aeq+f+f+nv  +pvp+ll++FSAPvkl
  CTQ27354.1 445 GTPIVTVHDDYNPETEQYTLTISQRTPPTAEQAEKQPLHIPFAIELYDNEGKVIPLqkgghpvHPVLNVTQAEQTFVFDNVYFQPVPALLCEFSAPVKL 543
                 9******************************************************9888877777********************************** PP

                 E-- CS
     DUF3458  93 eyd 95 
                 ey+
  CTQ27354.1 544 EYK 546
                 985 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.2
                 SBSS-----EEEEEE CS
     DUF3458  31 gqkekkplviPikla 45 
                  +++ +pl +P+++a
  CTQ27354.1 583 RHQQGQPLSLPVHVA 597
                 445689999999886 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0     5e-19     1e-15       6     186 .]      24     187 ..      11     187 .. 0.81
   2 ?   -2.2   0.0         2   3.9e+03      64      92 ..     441     468 ..     424     502 .. 0.70

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 5e-19
                     EEEEEEETTTTEEEEEEEEEEEESS-ECEEEEEESSEEEECEEEEECTTCTCEEEEEEEECTTTTCEEEEECCEEETTCEEEEEEEEEEE-BSSS CS
  Peptidase_M1_N   6 dldlkidlkektfkGsvtitlqlkeatseivldakdlkiksvslsaevksesvkidfkieqkdeelltiklkeslqqtskytLeieyegelndkl 100
                     dl++++d ++  ++++++++  ++++   + ld +dl+   ++++ ++ s++       ++++++l++  l+e      ++t+  e++   n+ l
      CTQ27354.1  24 DLTFDLDAAKTVVTAESKVSRHAAASDVPLRLDGEDLTLIALQVNGQPWSDY-------KEENNQLVIGGLPE----HFTLTIVNEISPAANTAL 107
                     3555555667778888888888888888888888888885555554444444.......56666766655666....33455556787778**** PP

                     SEEEEEEEEETSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTS..EEEESSECCCEEEETTCEEEEEEEEEESBEGGG CS
  Peptidase_M1_N 101 aGlykstYtdkgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkee..talSnmpeeeseklengqkiteFeqtpkmstYL 186
                     +Gly+     +ge+   ++Tq+ea+ +R ++  +D+P+v+A+ft++i+a+k +  ++lSn+++ ++ +leng++++++++ ++++ YL
      CTQ27354.1 108 EGLYQ-----SGEA---LCTQCEAEGFRHITWYLDRPDVLARFTTKIIADKAKypFLLSNGNRMAEGELENGRHWVQWQDPFPKPCYL 187
                     *****.....7777...**********************************9999********************************8 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2
                     EECTTTTCEEEEECCEEETTCEEEEEEEE CS
  Peptidase_M1_N  64 ieqkdeelltiklkeslqqtskytLeiey 92 
                     ++q+ +  +t++ + +++ t++ytL+i  
      CTQ27354.1 441 YSQSGTPIVTVHDDYNPE-TEQYTLTISQ 468
                     555555656666666555.7777777754 PP

>> Ovate  Transcriptional repressor, ovate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.7e-05     0.053      17      43 ..     559     585 ..     553     587 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.7e-05
       Ovate  17 aekgikdweeLeeLLacYLslNskehh 43 
                 a+++ ++w+  ++LLa+Y++lN ++h 
  CTQ27354.1 559 ARNDFSRWDAAQSLLATYIKLNVNRHQ 585
                 5688899***************99996 PP

>> DUF2063  Putative DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.55   1.1e+03      20      58 ..     264     303 ..     250     306 .. 0.84
   2 ?    9.2   0.0   0.00073       1.4      45      77 ..     390     422 ..     374     428 .. 0.82
   3 ?   -0.9   0.0         1     2e+03      47      67 ..     641     661 ..     598     670 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.55
                 XXXXX--HHHHHH.HHHHHHHHHHHTTTGGGGS-HHHHHH CS
     DUF2063  20 saakrlavYrnlv.fnnlieaLaaaFpvlrallGeerfda 58 
                  ++k+l+v+++ + ++++ +a ++++  +++++G e f++
  CTQ27354.1 264 MENKGLNVFNSKYvLARTDTATDKDYLDIERVIGHEYFHN 303
                 5678889998775268999999**************9985 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00073
                 TTGGGGS-HHHHHHHHHHHHHSGGGG-S-GGGH CS
     DUF2063  45 pvlrallGeerfdalarayirahpsrspllrey 77 
                  +l++llGee+f++ ++ y+++h  +  + +++
  CTQ27354.1 390 RMLHTLLGEENFQKGMQLYFERHDGSAATCDDF 422
                 689********************9888777776 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1
                 GGGGS-HHHHHHHHHHHHHSG CS
     DUF2063  47 lrallGeerfdalarayirah 67 
                 +r++l  +  ++la+++++ +
  CTQ27354.1 641 VREALTRTLANELADEFLAVY 661
                 444444455555555554443 PP

>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.052     1e+02      19      39 ..     778     798 ..     772     800 .. 0.88
   2 ?    6.7   0.3     0.003         6      22      41 ..     807     826 ..     807     830 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.052
  XPC-binding  19 qnPqlLqplLqqlaqsnPqll 39 
                  +nP+   +l+   a snP+ +
   CTQ27354.1 778 SNPNRVRSLIGAFASSNPAAF 798
                  8*****************987 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.003
  XPC-binding  22 qlLqplLqqlaqsnPqllql 41 
                  q L ++L +l q+nPq++  
   CTQ27354.1 807 QFLVEMLTELNQRNPQVASR 826
                  56889***********9975 PP

>> PMEI  Plant invertase/pectin methylesterase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.3   8.7e+03     115     123 ..     308     316 ..     305     333 .. 0.66
   2 ?   11.4   0.4   0.00015      0.31      66     124 ..     669     734 ..     622     754 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.3
                 HHHHHHHHT CS
        PMEI 115 qdtCedgfk 123
                   tC+d+f+
  CTQ27354.1 308 RVTCRDWFQ 316
                 579*****4 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00015
                 ..-HH.......HHHH.HHHHHHHHHHHHHHHHHHHHH.-HH.....HHHHHHHHHHHHHHHHHHHHTT CS
        PMEI  66 lkkkk.......aale.dClelyedavdeLedalaalk.rskrk.vddaqtwlsaaltdqdtCedgfke 124
                 ++          +al+ +Cl  +  a   L d l a + +  ++ + da + lsaa+ ++  C+d++ +
  CTQ27354.1 669 YR--VehadigkRALRnTCLRYLAFAEPTLGDKLVATQyH-QADnMTDALAALSAAVAAELPCRDALMQ 734
                 11..0223455678888***************99999954.45669********************944 PP

>> DNA_methylase  C-5 cytosine-specific DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0061        12       3      57 ..     626     680 ..     624     691 .. 0.84
   2 ?    3.6   0.0     0.017        35      88     119 ..     743     774 ..     731     784 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0061
                    EEEES-TT-HHHHHHHHTT-EEEEEEE--TTTHHHHHHH-.-SEEEES-TTTS-G CS
  DNA_methylase   3 fidLfaGiGGfrlgleaagfecvaaseidkkaaktYeanfkkvsigDitkidkkk 57 
                    + ++fa i  ++++  +   + ++a+e  ++  ++Y+an+ +    ++ +i k+ 
     CTQ27354.1 626 IAEMFAIIDPIAIAAVREALTRTLANELADEFLAVYNANKLDSYRVEHADIGKRA 680
                    689*************************************955555555555544 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.017
                    GHHHHHHHHHHHHH--SEEEEEEEGGGGGGCC CS
  DNA_methylase  88 gtLffeiiriikekkPkvfllENVkgLlkhdk 119
                    + L ++   i+++++P++ + E V+gLl+h++
     CTQ27354.1 743 DGLVMDKWFILQSTSPAANVVETVRGLLNHRS 774
                    479999999*********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 6353.82
//
Query:       CTQ27355.1  [L=257]
Description: alkanesulfonate transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-29  102.1   0.0    4.6e-29  101.7   0.0    1.2  1  ABC_tran     ABC transporter
    1.9e-05   25.0   0.0    4.7e-05   23.7   0.0    1.6  1  AAA_22       AAA domain
    0.00012   22.2   0.0    0.00027   21.1   0.0    1.6  1  AAA_33       AAA domain
    0.00012   22.0   1.1       0.07   12.9   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00077   19.9   0.3     0.0012   19.3   0.3    1.4  1  AAA_16       AAA ATPase domain
     0.0017   17.8   0.0       0.35   10.2   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0023   18.2   0.0          1    9.6   0.0    2.4  2  AAA_28       AAA domain
     0.0035   17.3   0.1     0.0067   16.3   0.1    1.4  1  RsgA_GTPase  RsgA GTPase
     0.0037   16.1   0.4        1.2    7.8   0.0    2.7  2  ABC_ATPase   Predicted ATPase of the ABC class
     0.0092   16.1   0.0      0.014   15.4   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.013   15.2   0.8       0.15   11.8   0.3    2.2  2  AAA_30       AAA domain
      0.018   14.8   0.1      0.039   13.7   0.1    1.5  1  AAA_29       P-loop containing region of AAA domain
      0.042   12.7   0.0      0.058   12.2   0.0    1.1  1  DLIC         Dynein light intermediate chain (DLIC)
      0.053   12.7   0.1        0.6    9.3   0.0    2.0  2  NB-ARC       NB-ARC domain
      0.084   12.4   1.4        0.2   11.2   0.0    2.1  2  AAA_25       AAA domain
       0.35   11.1   1.3          2    8.7   0.2    2.5  2  SbcCD_C      Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.0   4.1e-32   4.6e-29       1     136 [.      27     160 ..      27     161 .. 0.87

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 4.1e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH....HHHTCHHHHHHHSTTG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren....esdeeiekalsklglk 95 
                 l++++l++  g+ va+vG++G GKStLl+llagl+kp++Ge+l   ++l        +   ++++q+++l p +tv +n     + ++ ++al+ l  +
  CTQ27355.1  27 LNELDLHIPSGQFVAVVGRSGGGKSTLLRLLAGLEKPNAGELLAGATPLA-----AIQDDTRMMFQDARLLPWKTVIDNvglgLKGAWRDAALQALASV 120
                 68999*************************************66655555.....59**************************6666666666666666 PP

                 GTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  96 elkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +l+ +  ++ p+ LSgGqkqrvalaral+ +p+llllDEp 
  CTQ27355.1 121 GLESRA-QEWPAALSGGQKQRVALARALIHRPRLLLLDEPL 160
                 644444.4668*****************************6 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   4.2e-08   4.7e-05       5     128 ..      37     189 ..      34     195 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 4.2e-08
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee...................erpevv.......fvtlpsstsskdllrellralglelkaerlssee 77 
                  ++++v+G sG GK+tllr l+      ++a e                   ++++++        v l  ++ ++d + + l  +gle  a      +
  CTQ27355.1  37 GQFVAVVGRSGGGKSTLLRLLAGLE--KPNAGEllagatplaaiqddtrmmfQDARLLpwktvidNVGLGLKGAWRDAALQALASVGLESRA-QEWPAA 132
                 6899*****************9875..34444467888888888888888885555555544235555555558888888888888888887.333344 PP

      AAA_22  78 ll.ealeqalrarav...ielliiDE....aqhlr...seealeeLrsllnlsrkgvqliLv 128
                 l   + ++ + ara    ++ll++DE        +   + e+ e ++sl+   ++g++++Lv
  CTQ27355.1 133 LSgGQKQRVALARALihrPRLLLLDEplgaL---DaltRLEMQELIVSLWQ--EHGFTVLLV 189
                 44455555555555566667******54444...444369***********..******998 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.4e-07   0.00027       2     111 ..      40     198 ..      39     203 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.4e-07
      AAA_33   2 vllvGlpGsGKstlaerl...lkklg...avllssdt.......................................lrrrlfg..tdqqsktdytrvld 53 
                 v +vG +G GKstl++ l       +   ++ll+  t                                       ++++l+    + + +++++ ++ 
  CTQ27355.1  40 VAVVGRSGGGKSTLLRLLaglE---KpnaGELLAGATplaaiqddtrmmfqdarllpwktvidnvglglkgawrdaALQALASvgLESRAQEWPAALSG 135
                 679*************994423...34469999999999999999999999999999999999999999999777744444445566666678888888 PP

      AAA_33  54 rlyqilnelarkalsagrnvildat.....nlsr.rerarflklarrlgvpvrivvvetdeetl 111
                   +q++ +lar    + r ++ld +      l+r + ++ +++l++++g+ v++v+ +++e+++
  CTQ27355.1 136 GQKQRV-ALARALIHRPRLLLLDEPlgaldALTRlEMQELIVSLWQEHGFTVLLVTHDVSEAVA 198
                 888898.99*9999***********9988855552666899********************987 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   6.3e-05      0.07       1      22 [.      39      60 ..      39      83 .. 0.84
   2 !    7.8   0.2    0.0022       2.5     236     298 ..     132     192 ..     121     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.3e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                + +++G+ g GKS+LL++l +l
  CTQ27355.1 39 FVAVVGRSGGGKSTLLRLLAGL 60
                6789***************998 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0022
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ellkelsr.ngaQviltTHS 298
                  lS G+k+  al+ al+ ++   +lll+DEp   L+  l+r  + el+ +l + +g  v+l+TH+
  CTQ27355.1 132 ALSGGQKQRVALARALIHRP---RLLLLDEPLGALDA-LTRLEMqELIVSLWQeHGFTVLLVTHD 192
                 57999999999999999999...*************9.444444566667777788999999998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3   1.1e-06    0.0012      20     143 ..      33     158 ..      24     189 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.1e-06
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql...esaipy.salaqalareellrqlldeaesaeleawrekleealaavpelaga 114
                 + ++++ v ++G sG GKs+l+r l+  lek ++  l + ++ l   + ++++  + a++l +++++  ++      + +awr++ ++ala+v+  ++a
  CTQ27355.1  33 HIPSGQFVAVVGRSGGGKSTLLRLLA-GLEKPNAGELLAGATPLaaiQDDTRMmFQDARLLPWKTVIDNVGLG----LKGAWRDAALQALASVGLESRA 126
                 4456689*******************.7888875554444444436666666634577888787777777777....7788999888888866666666 PP

      AAA_16 115 ea........srllellkrll..allsrderplvlvlDd 143
                 ++        +      k+ +  a++   +rp +l+lD+
  CTQ27355.1 127 QEwpaalsggQ------KQRValARALI-HRPRLLLLDE 158
                 66664432332......22221122223.5578888885 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0076       8.5      23      41 ..      36      54 ..      19      58 .. 0.84
   2 !   10.2   0.0   0.00032      0.35     136     211 ..     132     203 ..      78     212 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0076
                TSSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 23 sksftaivGpNGSGKsnll 41
                s +f a+vG+ G GKs ll
  CTQ27355.1 36 SGQFVAVVGRSGGGKSTLL 54
                45799***********987 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00032
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                 +LSgG+k+ vala  +    +++  l llDe   aLD+  + ++ el+ +  ++  f v  +++++ e +    +v
  CTQ27355.1 132 ALSGGQKQRVALARAL----IHRPRLLLLDEPLGALDALTRLEMQELIVSLWQEHGFTVLLVTHDVSEAVAMADRV 203
                 8*******99987543....4455699*********************9998888777777776666655444444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00091         1       2      21 ..      40      59 ..      39      99 .. 0.86
   2 !    6.5   0.0    0.0084       9.4     134     162 ..     168     195 ..     162     196 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00091
      AAA_28  2 ivitGgestGKTtlleaLaa 21
                ++++G +++GK+tll+ La 
  CTQ27355.1 40 VAVVGRSGGGKSTLLRLLAG 59
                7999**************94 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0084
      AAA_28 134 reaiderlrealrelgipviivpsgdvee 162
                 r +++e++ ++++e+g+ v+ v + dv+e
  CTQ27355.1 168 RLEMQELIVSLWQEHGFTVLLV-THDVSE 195
                 889*******************.999876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1     6e-06    0.0067      90     124 ..      27      62 ..      13      71 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6e-06
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpele 124
                  l+el  ++ + +++++vG SG GKStL+  l++ ++
   CTQ27355.1  27 LNELDLHIPSgQFVAVVGRSGGGKSTLLRLLAGLEK 62 
                  5566666665599*****************998655 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0073       8.2     241     264 ..      33      57 ..      31      60 .. 0.87
   2 !    7.8   0.0    0.0011       1.2     377     413 ..     172     208 ..     124     213 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0073
                 EE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAl 264
                  ip G  +++vG+   GKsTLL+ l
  CTQ27355.1  33 HIPSGqFVAVVGRSGGGKSTLLRLL 57 
                 589998889*************966 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0011
                 HHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEET CS
  ABC_ATPase 377 vdrvrelykklgvstilvvggsgdyldvAdtvilmee 413
                  +++ +l++++g +++lv+  +++ +++Ad+v+l+ee
  CTQ27355.1 172 QELIVSLWQEHGFTVLLVTHDVSEAVAMADRVLLIEE 208
                 3455789999999999999999999999999999887 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.3e-05     0.014       2      22 ..      40      62 ..      39     155 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
                EEEEESTTSSHHHHHHHHHT..S CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg..e 22
                va+vGr+  GKStL++ l g  +
  CTQ27355.1 40 VAVVGRSGGGKSTLLRLLAGleK 62
                89****************98431 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   0.00013      0.15      17      57 ..      37      77 ..      31     159 .. 0.81
   2 ?    1.8   0.0      0.15   1.7e+02      37      65 ..     174     202 ..     169     244 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaa.ggrviglAptgk 57
                g ++++++G+ G GK+t+l+ l+ + + + g+ ++g++p ++
  CTQ27355.1 37 G-QFVAVVGRSGGGKSTLLRLLAGLEKPNaGELLAGATPLAA 77
                4.5899****************99988885666666666555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.15
      AAA_30  37 alreaweaaggrviglAptgkaAkvLaee 65 
                  ++ +w+++g++v+++++    A ++a+ 
  CTQ27355.1 174 LIVSLWQEHGFTVLLVTHDVSEAVAMADR 202
                 46899************999999999864 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   3.5e-05     0.039      17      39 ..      32      54 ..      25      62 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.5e-05
      AAA_29 17 ieidlkg.atlltGpsGsGKSTll 39
                ++i  +g ++ ++G+sG GKSTll
  CTQ27355.1 32 LHIP-SGqFVAVVGRSGGGKSTLL 54
                5555.555999************8 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.2e-05     0.058      21      56 ..      33      68 ..      24      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.2e-05
        DLIC 21 klPsgksvlvlGedgsGkttliaklqGveeekkGrG 56
                 +Psg+ v v+G +g Gk+tl+  l G+e+++ G  
  CTQ27355.1 33 HIPSGQFVAVVGRSGGGKSTLLRLLAGLEKPNAGEL 68
                58****************************999875 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00053       0.6      19      38 ..      36      55 ..      21      58 .. 0.75
   2 ?    1.2   0.0      0.15   1.7e+02      92     149 ..     139     201 ..     115     221 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00053
                CSEEEEEEESTTSSHHHHHH CS
      NB-ARC 19 qslvvalvGmgGvGKttlak 38
                   +va+vG+ G GK+tl++
  CTQ27355.1 36 SGQFVAVVGRSGGGKSTLLR 55
                3369*************985 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.15
                 HHHHHHHHCCCTTEEEEEE......EE-SHHHH.....HHHHCHTTSEEEEEESBCCCCCCS-S CS
      NB-ARC  92 lkrklvrlLltkrfllvlD......DVweeedwdkigvvlparenrlrvllTTRdeevanavsa 149
                     l r+L+++  ll+lD      D  +  +++++ v l  +e++  vll T d++ a a+++
  CTQ27355.1 139 QRVALARALIHRPRLLLLDeplgalDALTRLEMQELIVSLW-QEHGFTVLLVTHDVSEAVAMAD 201
                 55678999999988999994444444555555777777777.8888888888887766555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00018       0.2      29      53 ..      33      57 ..      28      60 .. 0.88
   2 ?   -0.5   0.3      0.71   7.9e+02     176     188 ..     179     191 ..     122     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
      AAA_25 29 llpagelallaGapgtGKttlaldl 53
                ++p g +++++G++g GK+tl+  l
  CTQ27355.1 33 HIPSGQFVAVVGRSGGGKSTLLRLL 57
                89*******************8655 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.71
      AAA_25 176 arrtgaavllvhH 188
                  +++g +vllv H
  CTQ27355.1 179 WQEHGFTVLLVTH 191
                 4678899999988 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       8.1     9e+03      33      44 ..      45      56 ..      42      60 .. 0.71
   2 ?    8.7   0.2    0.0018         2      61      87 ..     148     174 ..     112     177 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8.1
     SbcCD_C 33 lSGGekqflayl 44
                 SGG k++l+ l
  CTQ27355.1 45 RSGGGKSTLLRL 56
                699999777654 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0018
     SbcCD_C  61 epalrlvfLDEAFsklDeesiatllel 87 
                  +++rl++LDE  + lD+ ++ ++ el
  CTQ27355.1 148 IHRPRLLLLDEPLGALDALTRLEMQEL 174
                 3579*************9888777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1857.57
//
Query:       CTQ27356.1  [L=263]
Description: alkanesulfonate transport protein (ABC superfamily, membrane) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-28   99.2  12.3      4e-28   98.4  12.3    1.3  1  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.036   14.4   0.1       0.11   12.9   0.1    1.8  1  Romo1         Reactive mitochondrial oxygen species modulator


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4  12.3   4.4e-32     4e-28       1     181 [.      80     247 ..      76     250 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 4.4e-32
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   g++lG++++   ++++ +ll++ i++l+ +P+++l++l++       ++g   ++ i+l+ l++++++++++  ++r+++++lve ar +G+s + +
    CTQ27356.1  80 GLILGLISG--LSRWGERLLDTSIQMLRNVPHLALIPLVI------LWFGIDETAKIFLVSLGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGFAL 168
                   678888888..99***************************......99************************************************* PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldp 181
                   fr+v+lP alp+++ g+++a+g+++   +++e++ ++ G+g+l ++a +  +++     +v++++i++++l  +ad+ ++ll++
    CTQ27356.1 169 FRHVILPGALPSVMVGVRFALGLMWLTLIVAETISANAGIGYLAMNAREFLQTD-----VVVVAIILYAILGKLADVCAQLLER 247
                   ******************************************************.....999**************99999987 PP

>> Romo1  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.2e-05      0.11      11      31 ..      70      90 ..      65     105 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.2e-05
       Romo1 11 lmGaaVGlaiGllfGtfsalr 31
                l+G+a+G++iGl++G++s+l+
  CTQ27356.1 70 LVGFAIGGSIGLILGLISGLS 90
                567777777777777766664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2139.54
//
Query:       CTQ27357.1  [L=381]
Description: FMNH(2)-dependent alkanesulfonate monooxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-88  296.5   8.2    3.2e-88  296.2   8.2    1.0  1  Bac_luciferase  Luciferase-like monooxygenase
  ------ inclusion threshold ------
        0.1   12.5   0.1        0.2   11.6   0.1    1.4  1  RNA_pol_Rpo13   RNA polymerase Rpo13 subunit HTH domain


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.2   8.2   3.6e-92   3.2e-88       3     314 .]       5     326 ..       3     326 .. 0.98

  Alignments for each domain:
  == domain 1  score: 296.2 bits;  conditional E-value: 3.6e-92
  Bac_luciferase   3 fgvflptrqggalgaas.....aslrylvelaraaEelGfdavwvaehhggpggaldaftllaalaaaTerirlgtavtplytrhPavlAqqaat 92 
                     +++flpt+++g++ +++     +++ yl ++a++a++lGf++v+++++ ++    +da+ ++a + ++T+r+++++a +p    +P+v+A+qaat
      CTQ27357.1   5 MFWFLPTHGDGRYLGTEegarpVDYGYLQQIAQTADRLGFTGVLIPTGRSC----EDAWLVAASMIPVTQRLKFLVALRPSV-VSPTVAARQAAT 94 
                     69***********9999**********************************....***************************.************ PP

  Bac_luciferase  93 LdhlsgGRfglglgtggpaveerrfGv..dhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgpiP.vyvaaaspaglelaar 184
                     Ld+ls+GR+ ++l+tg++++e + +Gv  dh ery+  +Ef++++r+l++ge+v+f+G++ +v++a ll +p q+p+P +y++++s+ + elaa+
      CTQ27357.1  95 LDRLSNGRALFNLVTGSDPAELAGDGVflDHTERYEASAEFTHIWRKLMEGETVTFNGKHQRVRDAKLLFPPLQQPRPpLYFGGSSEVAQELAAE 189
                     ************************************************************999*******9*9999555**************** PP

  Bac_luciferase 185 hadglllageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraearaliagld..........fyaldsegagreaeaa...e 266
                      +d +l++gepp+++ae+i+++r+ aa++gr   ++r+gi+l+viv++t+eeA++ a+ li++ld          f+++ds+g++r+a+++   +
      CTQ27357.1 190 QVDLYLTWGEPPAQVAEKIAQVREKAARHGR---QVRFGIRLHVIVRETNEEAWQAADSLISHLDdetiaraqaaFARTDSVGQQRMAALHngrR 281
                     *******************************...***************************9999**************************8878 PP

  Bac_luciferase 267 iqeeedanlwagaadavpdelvaatalvGtpeqvaerlaayaeagvde 314
                     +++e ++nlwag++ a+   ++a+talvG++++vaer+ +ya++g+d+
      CTQ27357.1 282 DKLEISPNLWAGVGLAR---GGAGTALVGDAATVAERINEYAALGIDS 326
                     8***************9...*************************995 PP

>> RNA_pol_Rpo13  RNA polymerase Rpo13 subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   2.3e-05       0.2      24      43 .]     128     147 ..     126     147 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.3e-05
                    -TTHHHHHHHHHHHTT--SS CS
  RNA_pol_Rpo13  24 diEllvknTeiWdkLlrGki 43 
                     +E++ + T iW kL++G++
     CTQ27357.1 128 RYEASAEFTHIWRKLMEGET 147
                    69****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3055.21
//
Query:       CTQ27358.1  [L=320]
Description: alkanesulfonate transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-12   46.9   0.0    1.3e-11   44.9   0.0    1.8  2  NMT1            NMT1/THI5 like
    3.3e-10   39.8   0.0    9.8e-07   28.4   0.0    2.2  2  SBP_bac_3       Bacterial extracellular solute-binding protei
    3.7e-10   39.9   0.0    3.3e-09   36.8   0.0    2.0  1  NMT1_2          NMT1-like family
    1.7e-07   31.1   0.1    2.8e-07   30.4   0.1    1.3  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
    8.1e-07   28.7   0.0    1.4e-05   24.6   0.0    2.1  2  NMT1_3          NMT1-like family
    3.7e-05   23.4   0.1      9e-05   22.2   0.0    1.7  2  OpuAC           Substrate binding domain of ABC-type glycine 


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   4.2e-15   1.3e-11      29     146 ..      66     183 ..      60     216 .. 0.89
   2 ?   -0.7   0.0      0.38   1.1e+03      49      81 ..     246     278 ..     233     286 .. 0.81

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 4.2e-15
                 SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--EEEEEECCC-.-SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE CS
        NMT1  29 adpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqeplsglivlkdsg.ikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvn 126
                 a+  + +e+++ g  d+g +  +  + a+a+g+++v ++a   +p   +i  +++  i+++++LkGk++++++++ +  ll + l+ +g+++sd++ v 
  CTQ27358.1  66 AG-PQMLEALNVGSIDIGSTGDIPPIFAQAAGADLVYIGAEPPKPKAEVILVAQGSpIHNVAELKGKKVAFQKGSSSHNLLLRALQLAGLKFSDIQPVY 163
                 44.567889999******************************999988887666555****************************************** PP

                 -.TT-HHHHHHCTSSSEEEC CS
        NMT1 127 vggtslakalltgkvDaaig 146
                     ++ +a+ +g+vDa+ +
  CTQ27358.1 164 LAPADARAAFQQGNVDAWAI 183
                 ****************9863 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.38
                 -HHHHHHHHHTT--EEEEEEEE-S--EEEEEEC CS
        NMT1  49 yqesllaarakglpvvsvaallqeplsglivlk 81 
                 +q  +l+a+  glp   +a++l++ + + ++  
  CTQ27358.1 246 AQSITLLAKTMGLPEAVIASYLDHRPPTAVTPV 278
                 56678899999***99****9999887777665 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00027      0.81     111     156 ..      30      82 ..      17     108 .. 0.79
   2 !   28.4   0.0   3.3e-10   9.8e-07      87     177 ..     112     202 ..     105     221 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00027
                 SEEEEETTSH......HHHHHHHHHHC.TSEEEEESSHHHHHHHHHTTSSSEE CS
                 xxxxxxxxxx......xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 111 kkvgvqagst......aeellkeelkk.gaeivefdtleealqaLkngrvdav 156
                  ++g q+gs+      +++ll++ +++ +++ +ef+  +++l+aL+ g++d  
  CTQ27358.1  30 LRIGYQKGSVsmvlakSHQLLEQRYPQtHISWIEFPAGPQMLEALNVGSIDIG 82 
                 489*******5555444445555555599999******************975 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 3.3e-10
                 EEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC....TSEEEE.ESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  87 qvllvrkkdaskissiksladLkgkkvgvqagstaeellkeelkk....gaeive.fdtleealqaLkngrvdavvadspvlaylvkknpdkkvvl 177
                 +v+lv +++      i ++a+Lkgkkv+ q+gs++++ll ++l+       +i++ +   ++a +a ++g+vda++  +p    ++ + +   ++ 
  CTQ27358.1 112 EVILVAQGS-----PIHNVAELKGKKVAFQKGSSSHNLLLRALQLaglkFSDIQPvYLAPADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLTD 202
                 578888553.....488888****************99888554477885566643899******************9999999988888777666 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.1e-12   3.3e-09       4     240 ..      26     243 ..      23     257 .. 0.72

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.1e-12
      NMT1_2   4 ekeqlklGfialtdaaplvvakekgl.fakeGlt.velekqaswaelrdkllagelDaahv.ltpapllidlGiggakadmkvlasl.nlnGqaitlsn 98 
                  + +l++G+++ +  +++v ak  +l  +++  t ++++++ ++++++++l  g++D++     p +++   G     + +++ a+  + +   i++++
  CTQ27358.1  26 APDALRIGYQKGS--VSMVLAKSHQLlEQRYPQThISWIEFPAGPQMLEALNVGSIDIGSTgDIPPIFAQAAGA----DLVYIGAEPpKPKAEVILVAQ 118
                 6678888888754..55555555554055566666999999999999999999999999997777777777777....555554444144455566654 PP

      NMT1_2  99 klkdkkvsdakalkdlvakkkas.kplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvtal 196
                           + +++++     + k+ k+a    +s h+lllr +L+ aGl+  +d++ v + p+++ a++++g++d+++  +P+ + a+ +g  v +l
  CTQ27358.1 119 ---------GSPIHNVA-----ElKGKKVAFQKGSSSHNLLLR-ALQLAGLKF-SDIQPVYLAPADARAAFQQGNVDAWAIWDPYYSAALLQGG-VRVL 200
                 .........45554442.....22667999999999***9998.6889****8.*******************************999988775.8888 PP

      NMT1_2 197 tsqelwkdhPekvlgvredfveknpntaralvkalleAtkwlda 240
                 t+++ +k+  + +  +++ ++e+n +  + ++++ ++A  +   
  CTQ27358.1 201 TDGTDLKQ-TGSFYLASRPYAERNGAFIEGVLDTFTQADALTHS 243
                 77755455.56666667777788877777777777777776664 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1   9.5e-11   2.8e-07      41     172 ..      69     192 ..      62     268 .. 0.71

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 9.5e-11
                     HHHHHHHTTS-SEEE--HHHHHHHHHH.S-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--H CS
  Phosphonate-bd  41 avvealragqvDiaflgplayvqardq.agveplatrvrsdGsasyrsviivradsdiqsledLkgktiafvspsStsGylvpaalLvkeagldp 134
                     ++ eal  g++Di+ +g ++ + a++  a+++ ++++           vi+v+++s+i+++++Lkgk++af   sS    l+ a +L   agl+ 
      CTQ27358.1  69 QMLEALNVGSIDIGSTGDIPPIFAQAAgADLVYIGAEPP----KPKAEVILVAQGSPIHNVAELKGKKVAFQKGSSSHNLLLRALQL---AGLKF 156
                     799*****************9999965356666666665....44567999************************999999999999...79998 PP

                     HHHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHH CS
  Phosphonate-bd 135 eddfsevfsgshdaavlavlsgdadaaavsadaledlv 172
                     + d+++v+    d a +a  +g++da a+++  +    
      CTQ27358.1 157 S-DIQPVYLAPAD-ARAAFQQGNVDAWAIWDPYYSAAL 192
                     7.78***998655.667789********8886554444 PP

>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.8e-09   1.4e-05      89     168 ..     108     185 ..      90     198 .. 0.86
   2 ?    1.9   0.0     0.042   1.2e+02     157     211 ..     245     301 ..     218     311 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 4.8e-09
      NMT1_3  89 yaevfqlvvskdsgigsiadlkgkrvsvGpegsGtegsarailealglsekdlklleelgygesadalkdgqldgaalva 168
                  ++++ ++v++ s i+++a+lkgk+v++ ++gs++++  ++ l+ +gl+ +d+++  +l ++++  a+++g++d+ a+ +
  CTQ27358.1 108 KPKAEVILVAQGSPIHNVAELKGKKVAF-QKGSSSHNLLLRALQLAGLKFSDIQP-VYLAPADARAAFQQGNVDAWAIWD 185
                 45788999********************.66***********************7.9******************98865 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.042
      NMT1_3 157 kdgqldgaalvaGvPvsavtqlaase.dikliplddeqldkllkeyp.vftkyvipa 211
                 + + +   a + G+P + +++  + + +  ++p+++e++++ +++ + +++++ +p+
  CTQ27358.1 245 RAQSITLLAKTMGLPEAVIASYLDHRpPTAVTPVSAETAARQQQTADlFYENKLVPK 301
                 345577888899*******9988876377899***9999998887773456666665 PP

>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     3e-08     9e-05       3     255 ..      30     267 ..      28     269 .. 0.77
   2 ?   -2.7   0.0       1.2   3.5e+03      41      63 ..     293     315 ..     283     319 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 3e-08
                 EEEEEESSHHHHHHHHHHHHHHHHT.TEEEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHHHHHHHHHHHHHHEEEEEEEESEEECEEEEEEHHHHHHH CS
       OpuAC   3 ivigsknwteqevlaeilkqllekk.GykveltnlgstavlfaalasGdiDvypeewtgtayeaykkaveekkglevlgplgagnteglavpkyvaeky 100
                 ++ig++  + ++vla+  + l ++      ++ ++ +++ + +al  G+iD+     tg     +++a+    +l+  g+ + + +  ++    va+ +
  CTQ27358.1  30 LRIGYQKGSVSMVLAKSHQLLEQRYpQTHISWIEFPAGPQMLEALNVGSIDIGS---TGDIPPIFAQAAG--ADLVYIGAEPPKPKAEVIL---VAQGS 120
                 678888888888888876666666655588888888888899999999999988...8888888888666..4444456666666666655...45667 PP

                 TTTBHHHHCTHHGGTEEEEEHHCCHSTTSHHCCHHHHHHHHHHT-TTCEEEGSCEEEEHHHHHHHHHTTCSSEEEEETTSTHHHHT..TEEE-B-TTST CS
       OpuAC 101 giksisDLkkpaedlelgakgeflgrpdgwgcekvtegllkaYgldkvelvegseaamdaelyaaykrgepvvvyawtPdwaikky..dlvvLedpkgl 197
                  i+ +++L           kg+ ++ + g+ ++++   +l+  gl k+ ++ + +    a++ aa+++g++++  +w P    + +  +++vL+d  g+
  CTQ27358.1 121 PIHNVAEL-----------KGKKVAFQKGSSSHNLLLRALQLAGL-KFSDI-QPVYLAPADARAAFQQGNVDAWAIWDPYYSAALLqgGVRVLTD--GT 204
                 99999999...........67777888888888899999999999.56666.44455555*******************9888888546*****6..55 PP

                 S-SSEEEEEEEEHHHHHHSCT.HHHHHHHHC....--HHHHHHHHHHHHTTTT-HHHHHHHHH CS
       OpuAC 198 fppaynvvpvvrkefaekaPe.vaafLekls....ldtetlnelnaqvdvegkdpeevAkawl 255
                 + +++   +++++ +ae++ + ++ +L++++    l+ ++ ++    ++++   pe+v + +l
  CTQ27358.1 205 DLKQTGSFYLASRPYAERNGAfIEGVLDTFTqadaLTHSQRAQSITLLAKTMGLPEAVIASYL 267
                 6665677889999********9*******9988888888888888888888888888887777 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
                 HHHHHHHTTSSSEEEEEEHHHHH CS
       OpuAC  41 vlfaalasGdiDvypeewtgtay 63 
                  + ++l  +++D+ +  w +ta 
  CTQ27358.1 293 FYENKLVPKKVDIRARIWQPTAT 315
                 56777888899999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2321.38
//
Query:       CTQ27359.1  [L=191]
Description: NAD(P)H-dependent FMN reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-35  120.5   0.0    6.7e-35  120.1   0.0    1.2  1  FMN_red       NADPH-dependent FMN reductase
      5e-09   36.2   0.0      6e-09   35.9   0.0    1.4  1  Flavodoxin_2  Flavodoxin-like fold


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   0.0   7.4e-39   6.7e-35       1     150 [.       1     140 [.       1     145 [. 0.95

  Alignments for each domain:
  == domain 1  score: 120.1 bits;  conditional E-value: 7.4e-39
                 -EEEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEETTTS..--..---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCH CS
     FMN_red   1 mkilvisGSlrkgsntrklaewaaealkeagaevelidladl.ilpcalcdkdlesegqtsddvaellekiaaadaliivtPeYngsysgllKnalDrl 98 
                 m+++ ++GS+r +s++ +l+e+a e+l +a++ev + +l+++ +    l+ + +     ++++++ l e++a ad+lii+tP+Y++s+sg+lK++lD+l
  CTQ27359.1   1 MRVITLAGSPRYPSRSSALLEYARETLTAADIEVCHWHLQNFaPED--LLYARF-----DNPALQTLNEQLAGADGLIIATPVYKASFSGALKTLLDLL 92 
                 9****************************************95555..888899.....9*************************************** PP

                 T-.SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHHHHHHHTT-EEEECSEEEE CS
     FMN_red  99 srtrgkkelrgKpvalvavgggrrgglraeeqlrqvlaelgaivvpraavav 150
                 +    +++l+gK+v+++a+gg+ ++ l+++++l++vl+ l+a+ + ++++a 
  CTQ27359.1  93 P----ERALEGKIVLPLATGGTIAHMLAVDYALKPVLNALKAQEILHGVFAD 140
                 9....****************************************9999885 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   6.7e-13     6e-09       1     102 [.       1      91 [.       1     161 [. 0.89

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 6.7e-13
                   -EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCCT-----CCCCHCCHHHHTT.CHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHH CS
  Flavodoxin_2   1 mkiLiinahprpeksfssalaqafvealekagphevtvrdLyadflpvlttrdlaaklayeek.padveseqiekllaadaivlqfPlwwfgvPail 96 
                   m++ ++ ++pr+  s+ssal++ + e+l++a+  ev   +L +     + ++dl     y+++ ++  ++ + e+l+ ad +++++P++  +++ +l
    CTQ27359.1   1 MRVITLAGSPRY-PSRSSALLEYARETLTAAD-IEVCHWHLQN-----FAPEDL----LYARFdNPALQTLN-EQLAGADGLIIATPVYKASFSGAL 85 
                   899*********.6******************.9*********.....455555....58887447788888.99********************** PP

                   HHHHHH CS
  Flavodoxin_2  97 KgwiDr 102
                   K  +D 
    CTQ27359.1  86 KTLLDL 91 
                   ***997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1489.69
//
Query:       CTQ27360.1  [L=336]
Description: dihydro-orotate oxidase, FMN-linked [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-91  306.1   0.1    2.8e-91  305.8   0.1    1.0  1  DHO_dh    Dihydroorotate dehydrogenase


Domain annotation for each model (and alignments):
>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.8   0.1   1.5e-95   2.8e-91       4     290 ..      47     335 ..      45     336 .] 0.96

  Alignments for each domain:
  == domain 1  score: 305.8 bits;  conditional E-value: 1.5e-95
                 EEETTEEESSSEEE-TTSSTTSSSHHHHHCTTSSEEEEEEE-SS-B--S-S--EEEETTCTEEEE---S-BS-HHHHHHHHHHHHHHHHCC.CEEEEEE CS
      DHO_dh   4 tkvlglkfknpiglAaGfdkegeeilkllklgfgaieigsvtpkpqeGnpkPrvfrlkedrsvlNslGlnneGldavlekllkrrkeqeekkelginls 102
                 ++++gl+fknp+glAaG+dk+ge+i++l ++gfg+ieig+vtp+pq+Gn+kPr+frl+  + ++N++G+nn+G+d+++e+++k          lgin++
  CTQ27360.1  47 VTCMGLTFKNPLGLAAGLDKNGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRIFRLVDAEGLINRMGFNNHGVDNLVENVKKAHFD----GVLGINIG 141
                 789*****************************************************************************9988744....469***** PP

                 E-TTS..S.HHHHHHHHHHHHGGGESEEEEES-SCTCCTSCCCGCHHHHHHHHHHHHHHHH........SSEEEEEE-SSSSHHHHHHHHHHHHHHTEC CS
      DHO_dh 103 kakkt..enavddyvevvrkigpfadilelNvSsPntpglrdlqekeelkaillkvvkevs........kvpvlvKlaPdltdeekkdiadvllelkld 191
                 k+k+t  e+  ddy  +++k+ p+a+++++N+SsPntpglr+lq+ e+l   l+  +++           vpv vK+aPdl  ee +++ad l+++++d
  CTQ27360.1 142 KNKDTpvEHGKDDYLICMEKVYPYAGYIAINISSPNTPGLRTLQYGEALDDLLSGIKNKQLelqqkhqkYVPVAVKIAPDLLPEELIQVADSLVRHNID 240
                 *****99999****************************************999999888778999999899**************************** PP

                 EEEE...BSEE--CTTCCGCCCCTTSSEEEEEGGGHHHHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHHHH CS
      DHO_dh 192 giivtNttvqrlaidlkseknvkanktGGlsGkalkdialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpkiakkikke 290
                 g+i+tNtt+ r+   ++  k+ ++  tGGlsG++l+  ++++ir l+++l++++piIgvGGi s   a eki aGAslvq+y++++f+gp ++k+i   
  CTQ27360.1 241 GVIATNTTLDRS--LVQGMKHCDE--TGGLSGRPLQLKSTEIIRMLSAELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTH 335
                 ************..8889899996..********************************************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2684.20
//
Query:       CTQ27361.1  [L=180]
Description: hypothetical protein CH1034_180048 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-68  229.4   0.0    2.1e-68  229.2   0.0    1.0  1  ZapC      Cell-division protein ZapC


Domain annotation for each model (and alignments):
>> ZapC  Cell-division protein ZapC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.2   0.0   1.2e-72   2.1e-68       2     168 ..       3     170 ..       2     171 .. 0.98

  Alignments for each domain:
  == domain 1  score: 229.2 bits;  conditional E-value: 1.2e-72
        ZapC   2 lkPddkWrWyfdeeedrLmLdLgedmvflsrykakmLipdafkeseFsvddaalYieleeklkelelseeqrvelvLnalaakrflkPlmpkSWfFetq 100
                 +kPdd+WrWy+dee+dr+mLdL+++m+f+sr++++mL+pdaf  s F+vddaalY+++eek+++lels+eqr+elvLnal a rflkP+mpkSW+F ++
  CTQ27361.1   3 IKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFARRMLTPDAFAPSGFCVDDAALYFSFEEKCRDLELSKEQRAELVLNALTAIRFLKPQMPKSWHFIAH 101
                 89************************************************************************************************* PP

        ZapC 101 seevkpeegelve..lkeekeeakflvveageqaslcllvseelaLsdsktlkqfdaiKvmndrllplke 168
                 +++++p+ g+  +  l++++e++++lvve g++a+lcll+++ l+L++ + ++++d+iK+mndrl+p+++
  CTQ27361.1 102 THHWQPSGGDAACvwLSDTGEQVNLLVVEPGDNAALCLLAQPGLTLAG-RVMQLGDVIKIMNDRLQPAQS 170
                 *********988888********************************9.******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1489.89
//
Query:       CTQ27362.1  [L=369]
Description: putative 2Fe-2S cluster-containing protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-29  101.7   0.0    5.8e-29  100.8   0.0    1.4  1  MOSC      MOSC domain
    5.6e-27   94.0   0.0    1.3e-26   92.9   0.0    1.6  1  MOSC_N    MOSC N-terminal beta barrel domain
    2.5e-13   49.8   0.7    4.7e-13   48.9   0.7    1.5  1  Fer2      2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.036   14.1   0.0      0.068   13.2   0.0    1.4  1  Fer2_3    2Fe-2S iron-sulfur cluster binding domain
       0.13   12.4   0.0       0.32   11.1   0.0    1.7  1  Fer2_4    2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> MOSC  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   1.6e-32   5.8e-29       4     131 .]     139     262 ..     137     262 .. 0.94

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 1.6e-32
                 ---GGGGSEEEEETHHHHHHHHHS..GGGGG-STTTT--SEEES-.......-TTT-BTT-E.EEETT..................EE----THHHHHT CS
        MOSC   4 ihggdekavllisresldalneelkegrsveldpgrfreNivvggaaafeEdtwkelrigdrrfrlggacsRcqmvnvdqetga..rprepcktlakfr 100
                 ++++d  ++ll++++sl++l+++   ++  ++++++fr+N+vv+gaaa++Ed+wk +rig++ f++ ++csRc  ++v +e g+     ep++tl++fr
  CTQ27362.1 139 LSFADGYPYLLANEASLRDLQQRC--PA--SVSIEQFRPNLVVTGAAAWDEDSWKVIRIGEVVFDVAKPCSRCIFTTVSPERGQkhPAGEPLETLKRFR 233
                 67999*******************..65..59999**********9**************************************98889********98 PP

                 THHHHHHHHT---EEEEEEE-EEEETTS-EE CS
        MOSC 101 rvdkrvkgkgrfGvylrvleegtvrvGdeve 131
                 +      g + fG++l   ++g++rvGdeve
  CTQ27362.1 234 TAL--DNGDVDFGQNLIARNSGVIRVGDEVE 262
                 844..5799********************96 PP

>> MOSC_N  MOSC N-terminal beta barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   3.5e-30   1.3e-26       1     119 [.       1     116 [.       1     117 [. 0.97

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 3.5e-30
      MOSC_N   1 sarvssLyvyPiKsckgvslseaevtaaGllalDReflvvdedGkfltqrrePrlalirteldeedglLtltapgrkdlevslakakasleevsvlels 99 
                 + ++s+L+++P+Ks++g+ l++a  + +Gl a+DR f+v+++dG+f+t+r++P+++ + ++    ++ L+ltap+++++ v++ ++++++e ++v++ +
  CTQ27362.1   1 MVTLSRLFIHPVKSMRGIGLTHAFADISGL-AFDRLFMVTETDGTFITARQFPQMVKFIPAP--LHDGLHLTAPDGSSAVVRFSDFATQAEPTEVWGNH 96 
                 57899************************8.6*****************************9..6********************************** PP

      MOSC_N 100 asgldegdevakwlsdfLgk 119
                 +++l +  +v++wls f+++
  CTQ27362.1  97 FTALIAPAAVNQWLSGFFKR 116
                 *****************986 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.7   1.3e-16   4.7e-13       6      78 .]     296     362 ..     291     362 .. 0.79

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.3e-16
                 EEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE.CTTSSSSTHHHHHTTEEEEGGGSEES CS
        Fer2   6 kevevevadgettlldaaeenggidipysCggggCgtClvevlegev.qsdetelegeeldegklrlaCqtivt 78 
                 ++++++ + ++++ll+ +e++ gi +pysC++g Cg+C+++++egev + ++ ++ g+     + +laC ++++
  CTQ27362.1 296 QGQQFTGN-NQQVLLEQLEQQ-GIRVPYSCRAGICGSCRIRLEEGEVsPLKKNAVAGD-----GTILACSCVPK 362
                 44567654.4566******99.*************************86554455555.....478****9985 PP

>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.9e-05     0.068      44      65 ..     315     336 ..     284     353 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
      Fer2_3  44 ptlafrasCregiCGscavain 65 
                 + +   +sCr+giCGsc ++++
  CTQ27362.1 315 QGIRVPYSCRAGICGSCRIRLE 336
                 5677789**********98874 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.8e-05      0.32       2      38 ..     289     325 ..     288     359 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.8e-05
      Fer2_4   2 rpvtltfDGkevtvpeGdtvasAllangvdvprscky 38 
                 ++v +++ G+++t+   + +++ l ++g++vp sc  
  CTQ27362.1 289 ATVAIEWQGQQFTGNNQQVLLEQLEQQGIRVPYSCRA 325
                 6899*******************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3005.48
//
Query:       CTQ27363.1  [L=701]
Description: putative conserved AdoMet-dependent methyltransferase with RNA interaction domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-68  229.7   0.0    3.8e-64  216.0   0.0    2.3  2  UPF0020          Putative RNA methylase family UPF0020
      3e-22   79.1   0.1    4.8e-22   78.4   0.1    1.2  1  Methyltrans_SAM  S-adenosylmethionine-dependent methyltransfe
    6.9e-18   65.1   0.0    1.2e-17   64.3   0.0    1.3  1  THUMP            THUMP domain
    1.9e-13   50.4   0.0    3.3e-09   36.7   0.0    3.5  3  Cons_hypoth95    Conserved hypothetical protein 95
    2.9e-10   40.2   0.0    0.00087   19.1   0.0    3.4  3  Methyltransf_31  Methyltransferase domain
    4.7e-10   40.0   0.0     0.0016   19.1   0.0    3.5  3  Methyltransf_25  Methyltransferase domain
      1e-07   32.5   0.0      0.007   17.0   0.0    3.0  2  Methyltransf_11  Methyltransferase domain
    1.2e-07   31.4   0.0     0.0055   16.3   0.0    2.5  2  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.044   13.2   0.1         54    3.1   0.0    3.8  5  AviRa            RRNA methyltransferase AviRa
      0.049   12.9   0.0       0.33   10.2   0.0    2.3  2  N6_Mtase         N-6 DNA Methylase


Domain annotation for each model (and alignments):
>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.0   0.0   2.1e-67   3.8e-64       1     196 [.     162     375 ..     162     376 .. 0.97
   2 !   11.5   0.0    0.0001      0.18      80     169 ..     564     656 ..     534     662 .. 0.84

  Alignments for each domain:
  == domain 1  score: 216.0 bits;  conditional E-value: 2.1e-67
                 -SSS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS.............HHHHHHHHHH.....HH--EEE CS
     UPF0020   1 RgyRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle.............lkaeaeeear.....aelklyg 81 
                 RgyR+ +g ap+ke+LAaa+v+++gw pg+pllDPmCGsGt+lIEaa+l++++apgl+r ++++             +kaea+++ar     +e ++yg
  CTQ27363.1 162 RGYRDGTGMAPIKENLAAAIVMRSGWVPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGHWGFggwaqhddaiwkeVKAEAQTRARqglaaYETRFYG 260
                 9**************************************************************************999999999999988666666*** PP

                 EES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--..STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC-- CS
     UPF0020  82 sDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkalekalee 178
                 sD d+rv+++ar+Na++ag+g+li+f ++d+a+L+  l++g ++++++npPYGerl+s++al +L+s ++r +k+++ g  ++++++s++ +l ++l+ 
  CTQ27363.1 261 SDVDARVIERARRNARRAGIGELIDFDVKDVAQLNnpLPKGPYGTVISNPPYGERLESEPALIALHSLLGRIMKSQFGG--WNLSVFSASPELLSCLQL 357
                 ***********************************999***************************************99..****************** PP

                 -ESEEEEEEETTEEEEEE CS
     UPF0020 179 ralrkvkeknvklglllk 196
                 ra +++k+kn++l++++k
  CTQ27363.1 358 RADKQFKAKNGPLDCVQK 375
                 ***************997 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0001
                 EEEES-HHHHHHHHHHHHHTT-GGGEE.EEE--GGG.--STTS---EEEE---...-------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESS CS
     UPF0020  80 ygsDldrrvvqgareNaekagvgdlie.fsqadaak.LrlkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvlltsen 169
                   +D+ r +++ a++N++  g++++ + + qad+   Lr++++++d+i  +pP     +r++++ ++++ +  +++ lkr lr+gg   +++s+n
  CTQ27363.1 564 TTVDMSRTYLEWAERNLRLNGLTGRAHrLMQADVLGwLRESTEQFDLIFIDPPtfsNSKRMEDAFDVQRDHIRLMTDLKRLLRKGG--TIMFSNN 656
                 679******************9988653789999864779999**********64446899999999*****************44..4444444 PP

>> Methyltrans_SAM  S-adenosylmethionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.1   2.7e-25   4.8e-22      44     240 ..     456     657 ..     428     665 .. 0.84

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 2.7e-25
  Methyltrans_SAM  44 sgledltqadlw.aakqgrslvlqhryadgaasev.lvgeldespvvvesglkyqldigrnqnfglfldmrlgrdwvqenakdknvlnlfaytc 135
                      + l d+  a +   +   ++lvl+ r +++   ++  + e  +  +v+e   +  +++    ++glfld r  r+ + + +k+k+ lnlf+yt 
       CTQ27363.1 456 QRLFDIIAATIAvLDMAPNKLVLKTRERQKGKNQYqKMAEKGDFIEVQEYNARLWVNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTG 549
                      555555444443145566889999999987776652578999999************************************************* PP

  Methyltrans_SAM 136 gfsvaaiaggaskvvnvdmargslnkgrdnhrlnghdlrrvsflgydifkswgkikk.sgpydlviidppsfqkg.....sfaltkdykkilrr 223
                        sv a  gga+    vdm+r+ l+    n rlng   r   ++  d++   g ++  + ++dl+ idpp+f +      +f + +d+ +++  
       CTQ27363.1 550 SASVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLMQADVL---GWLREsTEQFDLIFIDPPTFSNSkrmedAFDVQRDHIRLMTD 640
                      **********************************************997...556651579***********7532223389************ PP

  Methyltrans_SAM 224 lpellveggevlacvns 240
                      l  ll +gg+++   n+
       CTQ27363.1 641 LKRLLRKGGTIMFSNNK 657
                      ***********987765 PP

>> THUMP  THUMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   6.7e-21   1.2e-17      19     143 ..      23     153 ..      11     154 .. 0.92

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 6.7e-21
                 EETTEEEEECTEEEEEETHHHHHHHHHTSTTECEEEEE.EEEEESSHHHHHHHHHHHHHHHHHHCT-EEEEEEEESSSTS...SSHHHHHHHHHHHHHH CS
       THUMP  19 agkgrivvelkgekpeedeellkealekargiqrvipv.cevceadledileaakeivkkkfeeeketFaVrvkrrgkhf...eftsreinrevGkaiv 113
                  g  +++v+++g+++++d +ll++ l ++r+++r++ +  e+  ++  d++  +++i +++++++++tFaV++   ++++   ++++ ++++++++ + 
  CTQ27363.1  23 LGATDCQVVQGGVHFQGDTRLLYQSLMWSRLASRIMLPlGECRVYSDLDLYLGVQAIPWTEMFNPGATFAVHFSGLNDEIrnsQYGALKVKDAIVDSFT 121
                 567899*****************************9998999999**********************************89999999999999999999 PP

                 CCTT..-EE-SSS-SEEEEEEEETTEEEEEEE CS
       THUMP 114 ektg..lkVdlenPdivvrveiikdkayisid 143
                 +k    + Vd e+Pd++++v++ k++a is+d
  CTQ27363.1 122 RKNLprPNVDRESPDLRINVWLNKETAHISLD 153
                 9888*************************997 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.012        22      40      60 ..     188     208 ..     170     216 .. 0.82
   2 ?    4.6   0.0     0.013        23      71     135 ..     262     324 ..     252     337 .. 0.74
   3 !   36.7   0.0   1.8e-12   3.3e-09      35     137 ..     531     632 ..     529     679 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.012
                    HCC-EEEETT-TTSHHHHHHH CS
  Cons_hypoth95  40 iegarvLDlfaGsGalglEAl 60 
                    + g  +LD  +GsG+l +EA+
     CTQ27363.1 188 VPGTPLLDPMCGSGTLLIEAA 208
                    677889*************97 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.013
                    ES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHHH CS
  Cons_hypoth95  71 ekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakellieevlel 135
                    + d+++++  ++n ++ ++ e    +  +++ +l++    k+++  v  +PPy + l  e +l +
     CTQ27363.1 262 DVDARVIERARRNARRAGIGE-LIDFDVKDVAQLNNP-LPKGPYGTVISNPPYGERLESEPALIA 324
                    778999999999****99996.666666666666555.566789**********99654444433 PP

  == domain 3  score: 36.7 bits;  conditional E-value: 1.8e-12
                    HHCCCHCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--S.SSTTCH. CS
  Cons_hypoth95  35 ilaaeiegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPP.yakelli 129
                    +l++  +g+ +L+lf+ +G+ ++ A   ga++ + v+++++ ++  ++nl+  +l+++++ l + ++  +l++   +e+fd++f+DPP + +++ +
     CTQ27363.1 531 MLGQMSKGKDFLNLFSYTGSASVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLMQADVLGWLRE--STEQFDLIFIDPPtFSNSKRM 624
                    677788999************************************************9999999999999999..6789*********77666666 PP

                    HHHHHHHH CS
  Cons_hypoth95 130 eevlelle 137
                    e++++  +
     CTQ27363.1 625 EDAFDVQR 632
                    66665443 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.014        25       4      23 ..     190     209 ..     188     218 .. 0.83
   2 !   12.3   0.0   5.9e-05      0.11      29      82 ..     256     314 ..     243     404 .. 0.80
   3 !   19.1   0.0   4.9e-07   0.00087      31     113 ..     563     657 ..     536     697 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.014
  Methyltransf_31   4 glrvlDlGCGtGeltfelae 23 
                      g+++lD+ CG+G+l++e+a 
       CTQ27363.1 190 GTPLLDPMCGSGTLLIEAAM 209
                      6789*************995 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5.9e-05
  Methyltransf_31  29 aevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsn....e 82 
                       +++G D ++++ie+Ar na++ g+   + F + d+ +l++ l + ++  ++sn    e
       CTQ27363.1 256 TRFYGSDVDARVIERARRNARRAGIGeLIDFDVKDVAQLNNPLPKGPYGTVISNppygE 314
                      4699*********************9789*********995588899998888855550 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 4.9e-07
  Methyltransf_31  31 vvGiDiseeaielArenaqklgld..nveFeqgdiee.leklledekfDlilsn...........evlnaladpdkileeiervlkpggillie 110
                       + +D+s + +e A+ n++ +gl+    ++ q+d+   l ++   e+fDli+ +           ++++ + d    +  ++r+l++gg ++ +
       CTQ27363.1 563 TTTVDMSRTYLEWAERNLRLNGLTgrAHRLMQADVLGwLRES--TEQFDLIFIDpptfsnskrmeDAFDVQRDHIRLMTDLKRLLRKGGTIMFS 654
                      688*********************9888999******99965..688*******8888888888777799999999999*************98 PP

  Methyltransf_31 111 dpr 113
                      + +
       CTQ27363.1 655 NNK 657
                      766 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0         1   1.9e+03       2      17 ..     194     209 ..     193     215 .. 0.84
   2 !   15.9   0.0   8.9e-06     0.016      21      71 ..     255     309 ..     244     331 .. 0.84
   3 !   19.1   0.0   8.7e-07    0.0016      20      97 .]     559     649 ..     544     649 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1
                      EEET-TTSHHHHHHHC CS
  Methyltransf_25   2 LdlGcGtGrltlalak 17 
                      Ld  cG+G+l++++a 
       CTQ27363.1 194 LDPMCGSGTLLIEAAM 209
                      7889******999875 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 8.9e-06
                      SSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGB..SSSTTTEEEEEEE CS
  Methyltransf_25  21 kakvtgvDiseemleaareraeeegl..nvefvqgdaedl..pfedgsfDlvvss 71 
                      + +++g D++++ +e+ar++a+++g+   ++f ++d+ +l  p+++g +  v+s+
       CTQ27363.1 255 ETRFYGSDVDARVIERARRNARRAGIgeLIDFDVKDVAQLnnPLPKGPYGTVISN 309
                      589*********************99999********998446899999999994 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 8.7e-07
                      TSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCG.BSSSTTTEEEEEE.........ESTGG.GSS.HHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  20 gkakvtgvDiseemleaareraeeegl...nvefvqgdaed.lpfedgsfDlvvs.........sgalh.hls.dedlekalkeiarvLkpgG 97 
                      g+ + t vD+s ++le a+++++ +gl     +++q+d+   l +  ++fDl+++         +  ++  ++ ++d+ +++  ++r+L++gG
       CTQ27363.1 559 GARSTTTVDMSRTYLEWAERNLRLNGLtgrAHRLMQADVLGwLRESTEQFDLIFIdpptfsnskR--MEdAFDvQRDHIRLMTDLKRLLRKGG 649
                      58999******************99999988899*****885779999******97776654321..33323313466789999999999998 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00014      0.25      14      67 ..     251     308 ..     243     310 .. 0.86
   2 !   17.0   0.0   3.9e-06     0.007      18      96 .]     559     653 ..     547     653 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
                      HHHTTSEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCT..SS-TT-EEEEEE CS
  Methyltransf_11  14 lakrgarvvgvDlskemlklakekaseegl..kvefvvadaekl..pfednsfDlvvs 67 
                      la + +r +g D++++++++a+++a+++g+   ++f v d+ +l  p++++ +  v+s
       CTQ27363.1 251 LAAYETRFYGSDVDARVIERARRNARRAGIgeLIDFDVKDVAQLnnPLPKGPYGTVIS 308
                      5545599************************999********9877899998888887 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 3.9e-06
                      T.SEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCC.TSS-TT-EEEEEEES.-CCC-C..........CHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  18 g.arvvgvDlskemlklakekaseegl...kvefvvadaek.lpfednsfDlvvsse.vlhhve..........dpekalkeiaRvLkpgGllv 95 
                      g +++++vD+s + l++a+++ + +gl     ++++ad+   l    ++fDl+++   ++ + +          d+ +++  ++R+L++gG+++
       CTQ27363.1 559 GaRSTTTVDMSRTYLEWAERNLRLNGLtgrAHRLMQADVLGwLRESTEQFDLIFIDPpTFSNSKrmedafdvqrDHIRLMTDLKRLLRKGGTIM 652
                      467899********************9999668999999975788889******99874444433344455555*****************998 PP

                      E CS
  Methyltransf_11  96 i 96 
                      +
       CTQ27363.1 653 F 653
                      6 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   5.1e-05     0.092      58     115 ..     258     320 ..     250     327 .. 0.81
   2 !   16.3   0.0   3.1e-06    0.0055      55     140 ..     560     656 ..     531     664 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.1e-05
                 EEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTT...TSTTS-EEEEEE---STTTCHCHH CS
         MTS  58 vtlvdvdarAlesakenleankle..vevvasdvle...eveekkfdlivsNPPfhagkatel 115
                     dvdar +e a++n+++ ++   +++  +dv +    ++++ + +++sNPP+ +  + e 
  CTQ27363.1 258 FYGSDVDARVIERARRNARRAGIGelIDFDVKDVAQlnnPLPKGPYGTVISNPPYGERLESEP 320
                 5678******************9889888888886522256799**********988877665 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 3.1e-06
                 C.EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTTTST..TS-EEEEEE---STTTCHCHHHHHH......HHHHHHHHHEEEEEEEEEEEE CS
         MTS  55 eaevtlvdvdarAlesakenleankle...vevvasdvleeve..ekkfdlivsNPPfhagkatelavae......eliaeAkeaLkegGeLliVan 140
                   + t vd +   le a++nl+ n+l     ++++ dvl  +    ++fdli   PP  ++++  +++ +      +l+++ k+ L++gG++++  n
  CTQ27363.1 560 ARSTTTVDMSRTYLEWAERNLRLNGLTgraHRLMQADVLGWLResTEQFDLIFIDPPTFSNSKRMEDAFDvqrdhiRLMTDLKRLLRKGGTIMFSNN 656
                 446899********************988888999**98766533589*********6555544333322122333799999999999999876554 PP

>> AviRa  RRNA methyltransferase AviRa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.035        63      53      75 ..     189     211 ..     175     218 .. 0.77
   2 ?    3.1   0.0      0.03        54      81      99 ..     257     275 ..     252     280 .. 0.90
   3 ?   -3.8   0.0       3.9   6.9e+03     112     132 ..     396     416 ..     387     433 .. 0.77
   4 ?    1.5   0.0     0.092   1.7e+02      84     111 ..     565     592 ..     558     609 .. 0.79
   5 ?   -1.7   0.0      0.89   1.6e+03     149     208 ..     590     652 ..     584     669 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.035
       AviRa  53 apltlyDpCCGgayLltvlgllh 75 
                  +  l Dp CG++ Ll   ++l 
  CTQ27363.1 189 PGTPLLDPMCGSGTLLIEAAMLA 211
                 556799*********98877776 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.03
       AviRa  81 kvlasDvdeevlelakkNL 99 
                 + ++sDvd+ v+e a++N 
  CTQ27363.1 257 RFYGSDVDARVIERARRNA 275
                 789**************95 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 3.9
       AviRa 112 eelrelaeeyekeshaeales 132
                 ++lr++ +++ek + +e +e 
  CTQ27363.1 396 NRLRKNLKKFEKWARQEGIEC 416
                 568888888888888887765 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.092
       AviRa  84 asDvdeevlelakkNLsLLtkeglakre 111
                 + D++++ le a++NL+L    g a+r 
  CTQ27363.1 565 TVDMSRTYLEWAERNLRLNGLTGRAHRL 592
                 67999************96665555553 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 0.89
       AviRa 149 ievfkaditekeeeaekevdivitDlP.YGelvswqge..seepvkqlleslaavldpeesvv 208
                 +++++ad++    e +++ d++  D P + +  + +++   ++   +l+++l+++l++  +++
  CTQ27363.1 590 HRLMQADVLGWLRESTEQFDLIFIDPPtFSNSKRMEDAfdVQRDHIRLMTDLKRLLRKGGTIM 652
                 678999999999999999999999999445555555556556777788888888886655554 PP

>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00018      0.33      47     138 ..     190     315 ..     175     323 .. 0.84
   2 ?   -2.0   0.0      0.95   1.7e+03      90     138 ..     573     621 ..     565     633 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00018
    N6_Mtase  47 gesvyDpacGsggllvqaekvlkee...................................dgktkelsiyGqeknettyrLakmNlllhgi.eykkvki 109
                 g+  +Dp cGsg ll++a+   +++                                      + e  +yG ++++  ++ a+ N    gi e  ++++
  CTQ27363.1 190 GTPLLDPMCGSGTLLIEAAMLATDRapglhrghwgfggwaqhddaiwkevkaeaqtrarqGLAAYETRFYGSDVDARVIERARRNARRAGIgELIDFDV 288
                 55679*************998887799999999999999999999999999999987765556677889999999999999999999999944566778 PP

    N6_Mtase 110 rlgdtlekpkfekdkkfdvvvaNppfnqk 138
                 +    l++p  +      +v++Npp++++
  CTQ27363.1 289 KDVAQLNNPLPK--GPYGTVISNPPYGER 315
                 888889999988..899999999999976 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.95
    N6_Mtase  90 yrLakmNlllhgieykkvkirlgdtlekpkfekdkkfdvvvaNpp.fnqk 138
                  + a+ Nl l g      +  ++d l   +++ +++fd +   pp f+++
  CTQ27363.1 573 LEWAERNLRLNGLTGRAHRLMQADVLGWLRES-TEQFDLIFIDPPtFSNS 621
                 56678899999999998889999999988888.99*****9999856655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5014.16
//
Query:       CTQ27364.1  [L=635]
Description: fused ATP-binding subunits of ABC superfamily protein involved in precise excision of transposons [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-51  173.7   0.7    2.7e-25   89.5   0.0    3.7  3  ABC_tran      ABC transporter
    4.9e-23   81.1   9.7    1.8e-22   79.4   6.4    2.8  2  ABC_tran_CTD  ABC transporter C-terminal domain
    9.2e-20   71.6   6.9    4.7e-05   23.3   0.1    4.3  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.4e-12   47.5   8.0    3.7e-11   42.9   1.4    2.7  2  ABC_tran_Xtn  ABC transporter
    2.5e-10   40.2   0.2    0.00013   21.5   0.0    4.0  2  SMC_N         RecF/RecN/SMC N terminal domain
    4.2e-10   40.0   0.2    0.00012   22.4   0.0    3.9  2  AAA_22        AAA domain
    7.3e-09   35.8   0.3     0.0028   17.4   0.0    2.6  2  AAA_15        AAA ATPase domain
    9.4e-08   32.8   5.3       0.07   13.6   0.0    3.9  3  AAA_23        AAA domain
    1.2e-07   31.3   0.0      0.012   15.3   0.0    2.7  2  AAA_29        P-loop containing region of AAA domain
    1.3e-07   32.2   4.5    0.00026   21.4   0.0    3.1  3  AAA_16        AAA ATPase domain
    4.8e-07   29.8   0.0      0.048   13.6   0.1    2.6  2  RsgA_GTPase   RsgA GTPase
    4.6e-06   27.2   0.0       0.04   14.5   0.0    3.0  2  AAA_18        AAA domain
    6.7e-06   25.9   0.1       0.31   10.7   0.0    3.7  3  AAA_30        AAA domain
    9.8e-06   25.8   0.0       0.19   11.9   0.0    2.8  2  AAA_33        AAA domain
    1.1e-05   25.2   0.0      0.018   14.7   0.0    2.1  2  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-bind
    1.2e-05   25.3   0.0       0.12   12.4   0.0    2.6  2  MMR_HSR1      50S ribosome-binding GTPase
    1.9e-05   24.7   0.1      0.089   12.8   0.1    2.5  2  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
      2e-05   25.0   0.0      0.018   15.5   0.0    2.7  2  AAA           ATPase family associated with various cellular 
    2.5e-05   24.1   0.0       0.19   11.4   0.0    3.2  3  AAA_24        AAA domain
    2.9e-05   24.4   1.4      0.095   12.9   0.0    3.3  2  AAA_28        AAA domain
    3.6e-05   23.4   0.0       0.27   10.7   0.0    2.4  2  AAA_7         P-loop containing dynein motor region
    4.2e-05   23.9   0.0       0.24   11.8   0.0    2.7  2  RNA_helicase  RNA helicase
    4.6e-05   23.4   1.0       0.34   10.8   1.3    2.9  2  NACHT         NACHT domain
    7.5e-05   22.5   0.0       0.83    9.4   0.0    3.2  3  IstB_IS21     IstB-like ATP binding protein
    0.00013   21.3   0.1        1.5    8.1   0.0    3.4  3  Zeta_toxin    Zeta toxin
    0.00015   21.4   0.2       0.69    9.5   0.0    3.6  4  AAA_25        AAA domain
    0.00017   21.4   0.6       0.32   10.7   0.2    2.4  2  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
    0.00023   21.2   0.0       0.24   11.5   0.0    3.2  2  AAA_14        AAA domain
     0.0003   20.8   0.2        0.4   10.7   0.0    2.9  2  AAA_5         AAA domain (dynein-related subfamily)
     0.0005   18.9   0.9       0.31    9.7   0.0    3.2  3  AAA_13        AAA domain
    0.00055   19.9   0.0       0.26   11.2   0.0    2.7  2  ATPase_2      ATPase domain predominantly from Archaea
    0.00056   20.1   0.0          1    9.6   0.0    2.5  2  Roc           Ras of Complex, Roc, domain of DAPkinase
    0.00073   18.8   0.0       0.98    8.5   0.0    2.4  2  NB-ARC        NB-ARC domain
    0.00074   19.5   0.0       0.45   10.4   0.0    2.4  2  Rad17         Rad17 P-loop domain
     0.0012   18.8   0.1      0.089   12.7   0.0    2.5  2  MobB          Molybdopterin guanine dinucleotide synthesis pr
     0.0022   17.7   0.0       0.87    9.3   0.0    2.4  2  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
     0.0027   16.9   0.0        1.1    8.3   0.0    2.4  2  DUF815        Protein of unknown function (DUF815)
     0.0046   16.6   0.0          2    8.0   0.0    3.1  3  cobW          CobW/HypB/UreG, nucleotide-binding domain
     0.0053   15.9   0.0      0.039   13.0   0.0    2.2  2  T2SSE         Type II/IV secretion system protein
  ------ inclusion threshold ------
      0.012   15.6   0.1        1.3    9.1   0.0    2.8  2  Dynamin_N     Dynamin family
      0.015   15.1   0.1        3.1    7.6   0.0    2.5  2  dNK           Deoxynucleoside kinase
       0.02   14.1   0.0        2.7    7.0   0.0    2.4  2  G-alpha       G-protein alpha subunit
       0.02   14.9   3.1       0.73    9.9   0.3    2.9  2  Phasin        Poly(hydroxyalcanoate) granule associated prote
       0.03   13.3   0.1          2    7.2   0.0    2.9  3  AAA_10        AAA-like domain
      0.037   13.9   4.3        1.5    8.7   0.1    3.3  3  NTPase_1      NTPase
      0.038   13.0   0.0        7.3    5.5   0.0    2.4  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
      0.039   13.4   0.4        6.9    6.1   0.0    2.5  2  Arf           ADP-ribosylation factor family
      0.043   13.3   0.1        8.1    5.8   0.1    3.1  3  Pox_A32       Poxvirus A32 protein
      0.044   14.1   0.4       0.86    9.9   0.6    2.9  1  AAA_19        AAA domain
      0.045   12.6   0.1        1.5    7.6   0.0    2.3  2  DLIC          Dynein light intermediate chain (DLIC)
      0.049   13.3   0.9        3.5    7.2   0.2    2.9  3  SRP54         SRP54-type protein, GTPase domain
      0.052   13.6   3.3        4.4    7.3   0.0    3.9  3  DUF87         Helicase HerA, central domain
      0.091   13.1   0.0       0.32   11.4   0.0    1.9  1  EF-hand_14    EF-hand domain
      0.097   12.2   0.3        6.5    6.3   0.0    2.7  2  FeoB_N        Ferrous iron transport protein B
       0.12   11.6   0.0        9.1    5.5   0.0    2.4  2  Septin        Septin
       0.13   12.2   1.5       0.53   10.3   1.5    2.0  1  Laminin_II    Laminin Domain II
       0.15   11.5   0.0        4.8    6.5   0.0    2.6  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.22   11.6   3.0       0.22   11.6   0.4    2.2  2  UPF0242       Uncharacterised protein family (UPF0242) N-term
        1.1    9.6   5.7         39    4.6   0.4    4.1  3  AAA_17        AAA domain
        2.1    8.9   6.0          2    8.9   1.5    2.8  2  NPV_P10       Nucleopolyhedrovirus P10 protein
        6.5    7.3  13.0        1.4    9.4   5.3    3.6  3  Spectrin      Spectrin repeat
        7.8    3.9  18.4        3.7    4.9   3.7    3.7  4  DUF3584       Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   6.1e-24   1.8e-21       1     137 []      19     185 ..      19     185 .. 0.74
   2 !   89.5   0.0   9.3e-28   2.7e-25       2     137 .]     336     469 ..     335     469 .. 0.91
   3 ?    3.1   0.2      0.43   1.2e+02      26      95 ..     539     614 ..     535     627 .. 0.70

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 6.1e-24
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE........................EETTCEGGG............B-HHHCCHCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxx............xxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGei........................lldgkdlke............qeleslrkeigv 63 
                 l+n +l+++ +e+v +vG+nGaGKStL+k+l ++   + G+i                                             +  + +++++ +
  CTQ27364.1  19 LDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIiyeqdlivarlqqdpprnvagtvyD-------FvaegiaeqaaylKAYHDVSHQVMT 110
                 7999**************************************5555544444444444433333330.......0333333333334555555555555 PP

                 E-SS--S-TTSBHHHH.......HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  64 lpqepqlfpeltvren.......esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  p +++l++  +++e+       + d++i++++++lgl+   +  +    +sLSgG+ ++ al ral++ p++lllDEpt+
  CTQ27364.1 111 DPSDKNLNELARLQEQldnlglwQLDSRINEVIEQLGLDA--NAQL----ASLSGGWLRKAALGRALVSGPRVLLLDEPTN 185
                 5555666666656666999999999999*********998..5555....8*****************************8 PP

  == domain 2  score: 89.5 bits;  conditional E-value: 9.3e-28
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH........HHHTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx........xxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren........esdeeiekalsk 91 
                 k+ s ++++g k+a++G+nG+GK+tLlkl++g+l+ ++G+i++            ++ e++++ q+ ++l+p++tv +n          + ++ ++l  
  CTQ27364.1 336 KDFSAQIQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHV-----------GTKLEVAYFDQHrAELDPDKTVMDNlaegkqevMVNGKPRHVLGY 423
                 78999************************************54...........58899********************98765544444449999999 PP

                 STTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  92 lglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 l++  ++ +++ +  + LSgG++ r+ lar++lk ++ll+lDEpt+
  CTQ27364.1 424 LQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTN 469
                 999999999998888******************************8 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.43
                 HHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH....HHHTCHHHHHHHSTTG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx RF
    ABC_tran  26 tLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren....esdeeiekalsklglk 95 
                 t +k  ++  +p++++++  g++l++   +ele+l ++++ l+ e q  ++  v++     +  ++ +++l++l   
  CTQ27364.1 539 TAVKKTTEVAQPKAETVKRGGNKLSYnlqRELEQLPQKLEALEAELQTLQDQ-VADPdffgQPHDRTQQVLAQLAEA 614
                 6677778889999999*99999999977777777888888877774444444.444467886666666666666544 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1       1.1   3.1e+02      31      53 ..     109     130 ..     103     157 .. 0.71
   2 !   79.4   6.4   6.1e-25   1.8e-22       1      68 [.     561     629 ..     561     630 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 1.1
  ABC_tran_CTD  31 ladpelysdp.eklaelsaeleel 53 
                   + dp+   +  ++la+l+++l++l
    CTQ27364.1 109 MTDPS--DKNlNELARLQEQLDNL 130
                   55554..23346666666666554 PP

  == domain 2  score: 79.4 bits;  conditional E-value: 6.1e-25
  ABC_tran_CTD   1 klsykeqreleeleaeIeaLEeeiaeleaeladpelysdp.eklaelsaeleeleaeLeelyerWeeLe 68 
                   klsy+ qrele+l++++eaLE+e+++l++++adp+++ +p ++ +++ a+l+e+e++Le+++erWe+Le
    CTQ27364.1 561 KLSYNLQRELEQLPQKLEALEAELQTLQDQVADPDFFGQPhDRTQQVLAQLAEAEQALEAAFERWEYLE 629
                   9************************************8888***************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   7.5e-06    0.0022       3      24 ..      33      54 ..      32      94 .. 0.73
   2 !   23.3   0.1   1.6e-07   4.7e-05     193     301 ..     114     215 ..      93     217 .. 0.78
   3 !   19.3   0.1   2.7e-06   0.00078       3      25 ..     349     371 ..     348     389 .. 0.77
   4 !   12.2   0.1    0.0004      0.11     220     298 ..     424     496 ..     379     501 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 7.5e-06
      AAA_21  3 vliGpNgsGKSnLLdaldllar 24
                +l+G+Ng+GKS+L+++l   ++
  CTQ27364.1 33 CLVGRNGAGKSTLMKILNREQG 54
                79***************65333 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 1.6e-07
      AAA_21 193 klveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQ 291
                 +++ +el  l+e+ ++  ++++++r  + v++  g + + ++++lS G +r +al  al + +   ++ll+DEp n+L+ + +  l ++lk  +     
  CTQ27364.1 114 DKNLNELARLQEQLDNLGLWQLDSRI-NEVIEQLGLDANAQLASLSGGWLRKAALGRALVSGP---RVLLLDEPTNHLDIETIDWLEGFLKTFKG---T 205
                 44445555555555555555555444.88888899999999***********77777777766...**************999999999988866...* PP

      AAA_21 292 viltTHSpll 301
                 +i+ +H+ ++
  CTQ27364.1 206 IIFISHDRSF 215
                 ******9665 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 2.7e-06
      AAA_21   3 vliGpNgsGKSnLLdaldllarl 25 
                 +liGpNg+GK++LL+++ +  ++
  CTQ27364.1 349 ALIGPNGCGKTTLLKLMLGQLQA 371
                 79*************99766554 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 0.0004
      AAA_21 220 gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                  + fl ++++  +p+r lS G +    ll+ l+  ++   ll++DEp n L+ + l+ l el++   +  + v+l++H+
  CTQ27364.1 424 LQDFLFHPKRAMTPVRALSGGERNR-LLLARLFLKPS--NLLILDEPTNDLDVETLELLEELIDGY-Q--GTVMLVSHD 496
                 6778888888899999999999999.78888887666..8*************9998888887333.3..588888887 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   1.4   1.3e-13   3.7e-11       1      72 [.     224     293 ..     224     309 .. 0.90
   2 ?    7.6   0.7     0.013       3.7       6      75 ..     514     582 ..     512     593 .. 0.75

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 1.3e-13
  ABC_tran_Xtn   1 velengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklek 72 
                   v+l++gkl +Y+GnY++yl  kee+l+ ++ ++++  ++++++e +I++  +  ++ ++ + r++aL+ + +
    CTQ27364.1 224 VDLDRGKLVTYPGNYDQYLLDKEEALRVEELQNAEFDRKLAQEEVWIRQGIK--ARRTRNEGRVRALKAMRR 293
                   689***********************************************99..89999***********54 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.013
  ABC_tran_Xtn   6 gklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklekiek 75 
                   g++ +Y G Y +   + ++ l+q+q a +k  +  +   e ++r + k    + +++ e+  +kle +e+
    CTQ27364.1 514 GRIGQYVGGYHDARGQQAQSLAQKQTAVKKTTEVAQPKAETVKRGGNKL-SYNLQRELEQLPQKLEALEA 582
                   8899****************************************99843.22222222333344454444 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0013      0.39      26     205 ..      31     219 ..      20     230 .. 0.50
   2 !   21.5   0.0   4.3e-07   0.00013      27     205 ..     348     503 ..     332     512 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0013
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx... RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk... 120
                   ++vG+NG+GKs l+  +    G ++    r    +dli +  ++ +  + a     f  e+ +      e     +++++ + +++ + ++ +    
  CTQ27364.1  31 RVCLVGRNGAGKSTLMKILNREQGLDDG---RIIYEQDLIVArLQQDPPRNVAGTVYDFVAEGIA------EQAAYLKAYHDVSHQVMTDPSDKNLnel 120
                 5689************988777776666...5555567777653333333333322333333222......1222222222222222222222222001 PP

                 HHHHHHHHCTT-STT....................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSH CS
                 xxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 kevsellesagiske....................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislre 199
                 + ++e+l + g+ +                     +LSgG    +a  L  A+   +   + llDe   +LD + +  +  +lk+ +    +i is+++
  CTQ27364.1 121 ARLQEQLDNLGLWQLdsrinevieqlgldanaqlaSLSGGWLRKAA--LGRALV--SGPRVLLLDEPTNHLDIETIDWLEGFLKTFK--GTIIFISHDR 213
                 2222223333332223344455555555555555577777533333..333332..2333456677777777777777777777666..5566667766 PP

                 HHCCC- CS
                 xxxxxx RF
       SMC_N 200 emleka 205
                  +++++
  CTQ27364.1 214 SFIRNM 219
                 666665 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 4.3e-07
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H.HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk.kevs 124
                  a++GpNG+GK+ ll  +   LG     +l++++ +  ih    + ++   ev+  fd++ ++    +++ +++ ++  +g++e+++ngk  +    ++
  CTQ27364.1 348 IALIGPNGCGKTTLLKLM---LG-----QLQADSGR--IHV---GTKL---EVAY-FDQHRAE---LDPDKTVMDNL-AEGKQEVMVNGKPRHVlGYLQ 425
                 589***********9887...99.....45555443..665...3344...4444.4544544...33444555555.456669******988745556 PP

                 HHH...HCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 125 ell...esagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                 ++l   ++a+    +LSgGe+      Ll+A    kp+ l +lDe    LD +  + + el++  +    ++ +s++++++ + 
  CTQ27364.1 426 DFLfhpKRAMTPVRALSGGERN----RLLLARLFLKPSNLLILDEPTNDLDVETLELLEELIDGYQ--GTVMLVSHDRQFVDNT 503
                 66544344555567*******8....677888889***************************9888..7788999999888765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0027      0.78       9      30 ..      33      54 ..      27     215 .. 0.63
   2 !   22.4   0.0   4.1e-07   0.00012       8     123 ..     348     488 ..     342     498 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0027
      AAA_22  9 vvtGesGtGKTtllrrlleqld 30
                +++G  G+GK+tl++ l ++  
  CTQ27364.1 33 CLVGRNGAGKSTLMKILNREQG 54
                799************9998864 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 4.1e-07
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.................erpevv.......fvtlpsstsskdllrellralglelka.....erlssee 77 
                 ++++G+ G+GKTtll+ +l ql++++   +                  ++++v       + ++ + ++++ +l  l  +l +++ a     +    e+
  CTQ27364.1 348 IALIGPNGCGKTTLLKLMLGQLQADSGRIHvgtklevayfdqhraelDPDKTVmdnlaegKQEVMVNGKPRHVLGYLQDFLFHPKRAmtpvrALSGGER 446
                 789*******************98877777**8988888888888884444444666666666666668888888888888888888766654444444 PP

      AAA_22  78 llealeqalraravielliiDEaqh.lrseealeeLrsllnlsrkgv 123
                  + +l++ + + +   lli+DE  + l   e le L +l +   ++ 
  CTQ27364.1 447 NRLLLARLFLKPSN--LLILDEPTNdL-DVETLELLEELID--GYQG 488
                 44555666666655..*********99.5555555555555..4444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   9.9e-06    0.0028      14      44 ..      19      50 ..      18      54 .. 0.90
   2 !   15.7   0.0   3.2e-05    0.0094      15      43 ..     336     365 ..     334     402 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9.9e-06
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsileald 44
                l+++e++++++   +l+G+N++GKS+++++l+
  CTQ27364.1 19 LDNAELHIEDNeRVCLVGRNGAGKSTLMKILN 50
                67889999998899***************996 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 3.2e-05
      AAA_15  15 kdveidlsee.ltvliGkNnsGKSsileal 43 
                 kd++ +++      liG+N++GK+++l+++
  CTQ27364.1 336 KDFSAQIQRGdKIALIGPNGCGKTTLLKLM 365
                 6667777766699**************987 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00053      0.15      22      37 ..      32      47 ..      12      50 .. 0.83
   2 !   13.6   0.0   0.00024      0.07      23      37 ..     349     363 ..     327     383 .. 0.88
   3 ?    6.3   0.5     0.042        12     153     193 ..     546     619 ..     480     629 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00053
      AAA_23 22 tlItGpNGaGKTTild 37
                ++++G NGaGK+T++ 
  CTQ27364.1 32 VCLVGRNGAGKSTLMK 47
                689***********97 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 0.00024
      AAA_23  23 lItGpNGaGKTTild 37 
                 +++GpNG+GKTT+l 
  CTQ27364.1 349 ALIGPNGCGKTTLLK 363
                 678**********96 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.042
      AAA_23 153 e......................rleelekeleeledekkllekl...........eqekekekeleeleeele 193
                 e                      +le+l ++le le+e + l+++            + ++  ++l e e++le
  CTQ27364.1 546 EvaqpkaetvkrggnklsynlqrELEQLPQKLEALEAELQTLQDQvadpdffgqphDRTQQVLAQLAEAEQALE 619
                 13344444555555555555555777777777777777777777777777777776333333444444444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.1e-05     0.012      13      39 ..      20      46 ..      17      49 .. 0.86
   2 !   12.9   0.0   0.00025     0.071      17      39 ..     340     362 ..     334     372 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.1e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                d+ +++i+ ++ + l+G++G+GKSTl+
  CTQ27364.1 20 DNAELHIEDNERVCLVGRNGAGKSTLM 46
                5667788877799************97 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00025
      AAA_29  17 ieidlkgatlltGpsGsGKSTll 39 
                 ++i++ + + l+Gp+G GK+Tll
  CTQ27364.1 340 AQIQRGDKIALIGPNGCGKTTLL 362
                 567766699*************8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1    0.0014      0.41      25     143 ..      30     182 ..      17     208 .. 0.47
   2 !   21.4   0.0   8.9e-07   0.00026      27     161 ..     348     485 ..     335     493 .. 0.64
   3 ?   -1.5   0.5       9.7   2.8e+03     117     145 ..     560     588 ..     523     622 .. 0.42

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0014
      AAA_16  25 elvllsGesGvGKsslvrellralekd........ggif..lrgkcdqlesaipy....salaqalareellrqllde..........aesaeleawre 99 
                 e v l+G  G GKs+l++ l r+   d        + i+  l+++  ++ +++ y      +a+++    +l++ +d           ++ +el++ +e
  CTQ27364.1  30 ERVCLVGRNGAGKSTLMKILNREQGLDdgriiyeqDLIVarLQQDPPRNVAGTVYdfvaEGIAEQA---AYLKAYHDVshqvmtdpsdKNLNELARLQE 125
                 66889************9999855555444443333333344444444444455544421122222...122222222222333332222222222222 PP

      AAA_16 100 kleeala.........avpelagaeasrllellkrll.allsrder..................plvlvlDd 143
                 +l                          ++e++ +l  +  ++ ++                  p vl+lD+
  CTQ27364.1 126 QL----DnlglwqldsR-----------INEVIEQLGlDANAQLASlsggwlrkaalgralvsgPRVLLLDE 182
                 22....22333444441...........44444333332222222244444444444555555678888886 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 8.9e-07
      AAA_16  27 vllsGesGvGKsslvrellralekd....ggif....lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala........... 106
                 + l+G+ G+GK++l++  l +l++d    +  +      + +dq+         a++   ++++  l++ +++  ++  +++ ++ l+           
  CTQ27364.1 348 IALIGPNGCGKTTLLKLMLGQLQADsgriH--VgtklEVAYFDQH--------RAELDPDKTVMDNLAEGKQEVMVNGKPRHVLGYLQdflfhpkramt 436
                 789**********************76441..3324334444444........4444444455555555555555555555555555566666555555 PP

      AAA_16 107 avpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrl 161
                 +v++l+g e++rll  l+rl+ +    +  l+++ +   ++d ++l+ll++L + 
  CTQ27364.1 437 PVRALSGGERNRLL--LARLFLKP---SN-LLILDEPTNDLDVETLELLEELIDG 485
                 88888888666655..55777333...44.55555567799********999886 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 9.7
      AAA_16 117 srllellkrllallsrderplvlvlDdlq 145
                 + l + l+r l++l+++ + l   l  lq
  CTQ27364.1 560 NKLSYNLQRELEQLPQKLEALEAELQTLQ 588
                 44444444444222222222333333333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00019     0.056      98     126 ..      27      56 ..      10      65 .. 0.81
   2 !   13.6   0.1   0.00017     0.048      88     130 ..     333     376 ..     301     382 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00019
                  TT.SEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  98 kd.ktsvlvGqSGvGKStLinallpelelk 126
                  +d + ++lvG  G+GKStL++ l+ e+ l 
   CTQ27364.1  27 EDnERVCLVGRNGAGKSTLMKILNREQGLD 56 
                  4547899***************99987665 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 0.00017
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                    +++ +++++  + ++l+G+ G GK+tL++ +l++l++  g +
   CTQ27364.1 333 VLVKDFSAQIQRgDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376
                  45666777777668999*******************99888777 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   0.00014      0.04       1      44 [.      32      73 ..      32     154 .. 0.63
   2 !    9.6   0.0    0.0044       1.3       1      34 [.     348     379 ..     348     429 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 0.00014
      AAA_18  1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe 44
                ++l G  G+GK+tl k L+++   g   + +++e +l   + ++
  CTQ27364.1 32 VCLVGRNGAGKSTLMKILNREQ--GLDDGRIIYEQDLIVARLQQ 73
                799*****************99..77777777666666555444 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0044
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvake 34 
                 I+l G+ G+GKttl k     l     ++ ++  
  CTQ27364.1 348 IALIGPNGCGKTTLLKLMLGQL--QADSGRIHVG 379
                 89************99873333..4444444444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0024      0.69      18      40 ..      29      51 ..      21      64 .. 0.79
   2 !   10.7   0.0    0.0011      0.31      21     127 ..     348     498 ..     337     501 .. 0.65
   3 ?   -0.4   0.1       2.8   8.1e+02      42      77 ..     524     559 ..     516     585 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0024
      AAA_30 18 drvavltGpAGtGKttalkalre 40
                +  ++l+G+ G+GK+t++k l++
  CTQ27364.1 29 NERVCLVGRNGAGKSTLMKILNR 51
                446899*************9854 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0011
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgka.AkvLaeelgieastiakllkrlk..................................... 81 
                  +l Gp G GKtt+lk +   ++a+ gr+++ +  + a  ++ ++el+ + +t+   l + k                                     
  CTQ27364.1 348 IALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAyFDQHRAELD-PDKTVMDNLAEGKqevmvngkprhvlgylqdflfhpkramtpvralsgge 445
                 4689**************888888854554433333330233333333.23333333322223455555555555555567777777777777777788 PP

      AAA_30  82 ......grarlepgtllivDEagm.vdtkqlaallkaaekagakvilvGDerQ 127
                       +r  l+p++lli DE    +d ++l+ l + ++ ++ +v+lv  +rQ
  CTQ27364.1 446 rnrlllARLFLKPSNLLILDEPTNdLDVETLELLEELIDGYQGTVMLVSHDRQ 498
                 88888877788888999999965426888777777777778888888888888 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2.8
      AAA_30  42 weaaggrviglAptgkaAkvLaeelgieastiakll 77 
                 ++a+g++   lA +++a k+ +e ++ +a+t+++  
  CTQ27364.1 524 HDARGQQAQSLAQKQTAVKKTTEVAQPKAETVKRGG 559
                 445599999999999999999999999999998755 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0    0.0014      0.39       2      40 ..      32      74 ..      32     127 .. 0.77
   2 !   11.9   0.0   0.00066      0.19       3      25 ..     349     375 ..     348     423 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0014
      AAA_33  2 vllvGlpGsGKstlaerllkklg....avllssdtlrrrlfgt 40
                v lvG +G+GKstl + l +++g     ++ ++d +  rl  +
  CTQ27364.1 32 VCLVGRNGAGKSTLMKILNREQGlddgRIIYEQDLIVARLQQD 74
                5789**************9999999988888888888888743 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00066
      AAA_33   3 llvGlpGsGKstlaerllkklg....a 25 
                  l+G++G+GK+tl++ +l +l+     
  CTQ27364.1 349 ALIGPNGCGKTTLLKLMLGQLQadsgR 375
                 689*************99999855443 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0041       1.2      15      66 ..      30     312 ..      22     336 .. 0.81
   2 !   14.7   0.0   6.2e-05     0.018       6      77 ..     337     549 ..     332     621 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0041
                  -EEEEEESTTSSHHHHHHHHHHHSSTSS.EEEEEE............................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx............................................................... RF
  ATP-synt_ab  15 qrtlipgafgvGktvisqslskqsnsdd.aiiyvg............................................................... 48 
                  +r++++g +g Gk+++++ l +++  dd  iiy                                                                 
   CTQ27364.1  30 ERVCLVGRNGAGKSTLMKILNREQGLDDgRIIYEQdlivarlqqdpprnvagtvydfvaegiaeqaaylkayhdvshqvmtdpsdknlnelarlqeql 127
                  799********************999998999988888888888888888888888888888888888888888888888888888888888888888 PP

                  .................................................................................................. CS
                  .................................................................................................. RF
  ATP-synt_ab  49 .................................................................................................. 48 
                                                                                                                    
   CTQ27364.1 128 dnlglwqldsrinevieqlgldanaqlaslsggwlrkaalgralvsgprvllldeptnhldietidwlegflktfkgtiifishdrsfirnmatrivd 225
                  88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                  .....................................................................ESEEHHHHHHHHHHCHHS CS
                  .....................................................................xxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  49 .....................................................................iGergnevaevleefpeg 66 
                                                                                        Ger++ + +  ++++e+
   CTQ27364.1 226 ldrgklvtypgnydqylldkeealrveelqnaefdrklaqeevwirqgikarrtrnegrvralkamrreRGERREVMGSAKMQVEEA 312
                  888888888888888888888888888888888888888888888888888888888888888888888788888777777777774 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6.2e-05
                  HHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEE....................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................................... RF
  ATP-synt_ab   6 DalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvg....................................................... 48 
                  D    i +G +++++g +g+Gkt++++ ++ q ++d+  i vg                                                       
   CTQ27364.1 337 DFSAQIQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGtklevayfdqhraeldpdktvmdnlaegkqevmvngkprhvlgylqdflfhpkra 434
                  6667799********************99999988888888887888888888888888888888888888888888888888888888888888888 PP

                  .................................................................................................. CS
                  .................................................................................................. RF
  ATP-synt_ab  49 .................................................................................................. 48 
                                                                                                                    
   CTQ27364.1 435 mtpvralsggernrlllarlflkpsnllildeptndldvetlelleelidgyqgtvmlvshdrqfvdntvtecwifegggrigqyvggyhdargqqaq 532
                  88888888888888888888888888888888888888888888888888888888888888888888888888888888877775444333333333 PP

                  ....ESEEHHHHHHHHHHCHHSSGGGGEEEEEE CS
                  ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  49 ....iGergnevaevleefpegtimkrtvlvan 77 
                                       +t++k+t+ va 
   CTQ27364.1 533 slaqK----------------QTAVKKTTEVAQ 549
                  33330................334444444444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00042      0.12       1      21 [.      31      51 ..      31      70 .. 0.88
   2 !   10.2   0.0    0.0021      0.61       1      33 [.     347     380 ..     347     402 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00042
                EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltg 21
                +v++vGr  +GKStL++ l +
  CTQ27364.1 31 RVCLVGRNGAGKSTLMKILNR 51
                699*************98865 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0021
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtT 33 
                 ++a++G    GK+tL++ ++g+ +a  ++++  T
  CTQ27364.1 347 KIALIGPNGCGKTTLLKLMLGQlQADSGRIHVGT 380
                 69*******************9778777766444 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0045       1.3      19      45 ..      29      55 ..      16      61 .. 0.80
   2 !   12.8   0.1   0.00031     0.089       9      46 ..     337     372 ..     328     389 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0045
                TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE 19 gdvilLeGdLGaGKTtlvrglakalgv 45
                ++ ++L G  GaGK+tl++ l ++ g+
  CTQ27364.1 29 NERVCLVGRNGAGKSTLMKILNREQGL 55
                5569***************99988776 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00031
                 HHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE   9 algkklakalgdvilLeGdLGaGKTtlvrglakalgve 46 
                 ++ +++++  gd i+L G+ G+GKTtl + ++ +l+ +
  CTQ27364.1 337 DFSAQIQR--GDKIALIGPNGCGKTTLLKLMLGQLQAD 372
                 44445544..899*****************99999775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.032       9.4       1      23 [.      32      54 ..      32      96 .. 0.87
   2 !   15.5   0.0   6.1e-05     0.018       2      33 ..     349     380 ..     348     412 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.032
                EEEESSTTSSHHHHHHHHHHHHT CS
         AAA  1 vllyGppGtGKTllakavakelg 23
                v+l+G  G GK++l+k + +e g
  CTQ27364.1 32 VCLVGRNGAGKSTLMKILNREQG 54
                79**************9998865 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 6.1e-05
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgse 33 
                  l+Gp G+GKT+l k +  +l+++  +i + +
  CTQ27364.1 349 ALIGPNGCGKTTLLKLMLGQLQADSGRIHVGT 380
                 699****************9987766655544 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0     0.005       1.4       3      22 ..      30      49 ..      28      58 .. 0.87
   2 ?   -1.2   0.0       4.8   1.4e+03     112     131 ..     192     212 ..     187     239 .. 0.78
   3 !   11.4   0.0   0.00067      0.19       3      22 ..     346     365 ..     344     376 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.005
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                 +++++G +g+GK+tl+k l
  CTQ27364.1 30 ERVCLVGRNGAGKSTLMKIL 49
                689**************977 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 4.8
      AAA_24 112 rrllkk.lqelrknvifiahe 131
                 +++l+  l+ +++++ifi+h 
  CTQ27364.1 192 IDWLEGfLKTFKGTIIFISHD 212
                 556666566777799999985 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00067
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                  ki+++Gp+g GKTtl+k +
  CTQ27364.1 346 DKIALIGPNGCGKTTLLKLM 365
                 59**************9987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0072       2.1       1      22 [.      31      52 ..      31      63 .. 0.87
   2 !   12.9   0.0   0.00033     0.095       1      19 [.     347     365 ..     347     403 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0072
      AAA_28  1 kivitGgestGKTtlleaLaar 22
                +++++G  ++GK+tl++ L+++
  CTQ27364.1 31 RVCLVGRNGAGKSTLMKILNRE 52
                79*****************965 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00033
      AAA_28   1 kivitGgestGKTtlleaL 19 
                 ki+++G+ ++GKTtll+ +
  CTQ27364.1 347 KIALIGPNGCGKTTLLKLM 365
                 79*************9754 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0016      0.45      27      55 ..      23      51 ..      21      60 .. 0.87
   2 !   10.7   0.0   0.00094      0.27      29      60 ..     341     372 ..     326     379 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0016
       AAA_7 27 elllknkkpvllvGptGtGKtviikdllk 55
                el+++ +  v+lvG  G GK++++k l +
  CTQ27364.1 23 ELHIEDNERVCLVGRNGAGKSTLMKILNR 51
                68999******************997655 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00094
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkldke 60 
                  ++++ ++ l+Gp G+GKt+++k +l +l+ +
  CTQ27364.1 341 QIQRGDKIALIGPNGCGKTTLLKLMLGQLQAD 372
                 5788999*****************99999865 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0051       1.5       1      21 [.      32      52 ..      32      71 .. 0.88
   2 !   11.8   0.0   0.00084      0.24       2      47 ..     349     390 ..     348     416 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0051
  RNA_helicase  1 iwlyGpsgeGKStlakeLaka 21
                  ++l+G++g GKStl+k L ++
    CTQ27364.1 32 VCLVGRNGAGKSTLMKILNRE 52
                  689*************98665 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00084
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvys.rnpeddfwdgY 47 
                    l Gp+g+GK+tl k +  +l+ ++     +++ +  + e  ++d+ 
    CTQ27364.1 349 ALIGPNGCGKTTLLKLMLGQLQADS-----GRIHVgTKLEVAYFDQH 390
                   689*************877777554.....33333344455555555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0031       0.9       2      21 ..      31      50 ..      30     102 .. 0.84
   2 !   10.8   1.3    0.0012      0.34       3      25 ..     348     370 ..     346     497 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0031
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                 v+l G++G GK+tL++ l 
  CTQ27364.1 31 RVCLVGRNGAGKSTLMKILN 50
                699*************9775 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0012
                 EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawa 25 
                 ++l G++G+GKTtLl+ +  +++
  CTQ27364.1 348 IALIGPNGCGKTTLLKLMLGQLQ 370
                 789************97765555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0029      0.83      43      80 ..      25      62 ..      18      76 .. 0.82
   2 !    8.7   0.0    0.0045       1.3      43      64 ..     341     362 ..     299     382 .. 0.77
   3 ?   -0.5   0.0         3   8.6e+02     108     147 ..     458     495 ..     443     502 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0029
   IstB_IS21 43 fiekkenivllGpsGvGKshlaialgveavraglsvlf 80
                +ie++e ++l+G  G+GKs l   l +e   ++ ++++
  CTQ27364.1 25 HIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIY 62
                6999*****************99888877666666666 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0045
   IstB_IS21  43 fiekkenivllGpsGvGKshla 64 
                  i++ + i+l+Gp G GK+ l 
  CTQ27364.1 341 QIQRGDKIALIGPNGCGKTTLL 362
                 48999*************9763 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 3
   IstB_IS21 108 kvdllilDdlgllpldqaeaellfeviekryerrsiiits 147
                  ++llilD+  +++ld +  ell e+i+  y+ + ++++ 
  CTQ27364.1 458 PSNLLILDEP-TNDLDVETLELLEELIDG-YQGTVMLVSH 495
                 3589****96.688999999988888875.6666666665 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0052       1.5      19      41 ..      32      54 ..      20      67 .. 0.82
   2 ?    1.0   0.0      0.76   2.2e+02     142     191 ..      69     116 ..      62     119 .. 0.85
   3 !    7.7   0.0    0.0067       1.9      15      49 ..     344     378 ..     333     399 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0052
  Zeta_toxin 19 illgGqpGAGKselaellkdele 41
                + l+G  GAGKs+l++ l++e +
  CTQ27364.1 32 VCLVGRNGAGKSTLMKILNREQG 54
                6799**************99976 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.76
  Zeta_toxin 142 dRyeeevaegRlvpkeehdeafeglresvealeeekqldrvkikdrdgkt 191
                 +R +++   +R+v  ++ d + eg++e+++ l+  +++++ + +d ++k+
  CTQ27364.1  69 ARLQQD--PPRNVAGTVYDFVAEGIAEQAAYLKAYHDVSHQVMTDPSDKN 116
                 555555..35***************************9999999988865 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0067
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdelerqgnvvrl 49 
                 r + i l G  G+GK++l++l+  +l+++++ +++
  CTQ27364.1 344 RGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHV 378
                 5556778899****************998888887 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.014       3.9      14      49 ..      10      45 ..       2      48 .. 0.83
   2 !    9.5   0.0    0.0024      0.69      30      50 ..     342     362 ..     332     387 .. 0.88
   3 ?   -0.9   0.0       3.5     1e+03     169     188 ..     476     495 ..     463     498 .. 0.84
   4 ?   -2.1   0.1       8.6   2.5e+03      79      98 ..     566     589 ..     538     624 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.014
      AAA_25 14 dlaapppprrwlvkgllpagelallaGapgtGKttl 49
                +l  + +p+ +  + ++  +e + l+G+ g+GK+tl
  CTQ27364.1 10 WLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTL 45
                566667777777888999*****************9 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0024
      AAA_25  30 lpagelallaGapgtGKttla 50 
                 + +g+ ++l+G+ g+GKttl+
  CTQ27364.1 342 IQRGDKIALIGPNGCGKTTLL 362
                 678999*************97 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 3.5
      AAA_25 169 vealeriarrtgaavllvhH 188
                 +e le++ + ++ +v+lv H
  CTQ27364.1 476 LELLEELIDGYQGTVMLVSH 495
                 6778999999*********9 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 8.6
      AAA_25  79 aEdsedelrrRlravgeal....r 98 
                 +    ++l+++l+a+ ++l    +
  CTQ27364.1 566 LQRELEQLPQKLEALEAELqtlqD 589
                 444444444444444444422221 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0056       1.6       2      24 ..      30      52 ..      29      64 .. 0.89
   2 !   10.7   0.2    0.0011      0.32       3      22 ..     347     366 ..     345     371 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0056
   PduV-EutP  2 kkilliGkvgsGKttLtqalkge 24
                +++ l+G+ g+GK tL++ l+ e
  CTQ27364.1 30 ERVCLVGRNGAGKSTLMKILNRE 52
                6899**************99876 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0011
   PduV-EutP   3 killiGkvgsGKttLtqalk 22 
                 ki liG+ g+GKttL + + 
  CTQ27364.1 347 KIALIGPNGCGKTTLLKLML 366
                 899************98765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.045        13       5      35 ..      32      62 ..      28      99 .. 0.72
   2 !   11.5   0.0   0.00082      0.24       5      28 ..     348     376 ..     345     416 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.045
      AAA_14  5 lvitGaRrvGKTtllkqlikellvkkesily 35
                ++++G   +GK+tl+k l +e+  ++ +i+y
  CTQ27364.1 32 VCLVGRNGAGKSTLMKILNREQGLDDGRIIY 62
                7899999********9999888855555555 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00082
      AAA_14   5 lvitGaRrvGKTtllkqlikell.....v 28 
                 +++ G+  +GKTtllk ++ +l      +
  CTQ27364.1 348 IALIGPNGCGKTTLLKLMLGQLQadsgrI 376
                 6799************9998887444441 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.018       5.3       2      19 ..      32      49 ..      31      54 .. 0.89
   2 !   10.7   0.0    0.0014       0.4       3      24 ..     349     370 ..     347     399 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.018
                EEEE--SSSSHHHHHHHG CS
       AAA_5  2 vlLvGppGtgKselaerl 19
                v+LvG  G gKs+l++ l
  CTQ27364.1 32 VCLVGRNGAGKSTLMKIL 49
                8*************9877 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0014
                 EEE--SSSSHHHHHHHGGGGBS CS
       AAA_5   3 lLvGppGtgKselaerlaaaln 24 
                  L+Gp G+gK++l + ++  l+
  CTQ27364.1 349 ALIGPNGCGKTTLLKLMLGQLQ 370
                 69*************9988775 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0011      0.31      23      78 ..      36      94 ..      20     130 .. 0.69
   2 ?    2.8   0.0      0.13        37      23      38 ..     352     367 ..     335     404 .. 0.81
   3 ?    1.2   2.2      0.39   1.1e+02     284     344 ..     530     591 ..     523     623 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0011
      AAA_13 23 GwNGaGKTtLSrllrslelgetepkfangsi.........eitng..eeldirVfNrdFveenlseq 78
                G+NGaGK+tL ++l+   +g     +  g i         +++++  ++ +  V+  dFv e ++eq
  CTQ27364.1 36 GRNGAGKSTLMKILNRE-QG-----LDDGRIiyeqdlivaRLQQDppRNVAGTVY--DFVAEGIAEQ 94
                9*************984.33.....333444111122344333332235566799..9999988855 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.13
      AAA_13  23 GwNGaGKTtLSrllrs 38 
                 G NG GKTtL +l+  
  CTQ27364.1 352 GPNGCGKTTLLKLMLG 367
                 9*********887654 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.39
      AAA_13 284 kqerLekliekveskkselleklkavsde.asensafeedkeelkaeaealeeqLkglqral 344
                 + ++L ++++ v+++++ ++ k ++v    +++  + +++ e+l +++eale++L++lq+++
  CTQ27364.1 530 QAQSLAQKQTAVKKTTEVAQPKAETVKRGgNKLSYNLQRELEQLPQKLEALEAELQTLQDQV 591
                 56677777777777775555555444443344444467777777777777777777777665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.047        14      20      57 ..      29      66 ..      22      73 .. 0.72
   2 !   11.2   0.0    0.0009      0.26      25      48 ..     350     373 ..     339     422 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.047
    ATPase_2 20 neiyfiYGpegsGKtaLlkeiienledkdk.yviyyial 57
                ne + + G+ g GK++L+k + ++ + +d+ ++iy  +l
  CTQ27364.1 29 NERVCLVGRNGAGKSTLMKIL-NREQGLDDgRIIYEQDL 66
                5556677**********9855.55555554377887765 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.0009
    ATPase_2  25 iYGpegsGKtaLlkeiienledkd 48 
                 + Gp g+GKt+Llk ++ +l+  +
  CTQ27364.1 350 LIGPNGCGKTTLLKLMLGQLQADS 373
                 56************9998884433 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0     0.011       3.2       1      23 [.      31      53 ..      31     106 .. 0.84
   2 !    9.6   0.0    0.0036         1       1      23 [.     347     369 ..     347     399 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.011
                EEEEESSTTSSHHHHHHCHCT-C CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedk 23
                +v+lvG +g+GK++l+k + +++
  CTQ27364.1 31 RVCLVGRNGAGKSTLMKILNREQ 53
                699*************9876665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0036
                 EEEEESSTTSSHHHHHHCHCT-C CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedk 23 
                 K+ l+G +g GKt+llk ++ + 
  CTQ27364.1 347 KIALIGPNGCGKTTLLKLMLGQL 369
                 99*************98776554 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0034      0.98      22      43 ..      31      52 ..      21      71 .. 0.83
   2 !    7.6   0.1    0.0066       1.9      22      41 ..     347     366 ..     332     386 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0034
                EEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 22 vvalvGmgGvGKttlakqilnk 43
                 v lvG+ G GK+tl+k  +++
  CTQ27364.1 31 RVCLVGRNGAGKSTLMKILNRE 52
                589*************977766 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0066
                 EEEEEESTTSSHHHHHHHHC CS
      NB-ARC  22 vvalvGmgGvGKttlakqil 41 
                  +al G  G+GKttl+k +l
  CTQ27364.1 347 KIALIGPNGCGKTTLLKLML 366
                 589************98665 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.025       7.1      47      71 ..      31      55 ..      15      88 .. 0.83
   2 !   10.4   0.0    0.0015      0.45      46      66 ..     347     366 ..     322     393 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.025
       Rad17 47 iLLisGPsGCgkstvvkvLskelgi 71
                 + + G  G gkst +k+L +e g 
  CTQ27364.1 31 RVCLVGRNGAGKSTLMKILNREQGL 55
                445779***************9986 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0015
       Rad17  46 riLLisGPsGCgkstvvkvLs 66 
                 +i  + GP GCgk+t +k + 
  CTQ27364.1 347 KIA-LIGPNGCGKTTLLKLML 366
                 354.55***********9865 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.21        61       2      19 ..      32      49 ..      31      60 .. 0.87
   2 !   12.7   0.0   0.00031     0.089       2      40 ..     348     387 ..     347     426 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.21
        MobB  2 lgivgksgsGKTtLlekl 19
                +++vg++g+GK tL++ l
  CTQ27364.1 32 VCLVGRNGAGKSTLMKIL 49
                789***********9876 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00031
        MobB   2 lgivgksgsGKTtLleklipelkarglrvgt.iKhahhgf 40 
                 ++++g +g+GKTtLl+ ++ +l+a   r+ +  K ++  f
  CTQ27364.1 348 IALIGPNGCGKTTLLKLMLGQLQADSGRIHVgTKLEVAYF 387
                 6799******************998766654234333333 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.038        11      26      58 ..      22      54 ..      18      61 .. 0.84
   2 !    9.3   0.0     0.003      0.87      21      59 ..     333     371 ..     323     385 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.038
      RuvB_N 26 akkreealdhvllyGpPGlGkttlakiiakelg 58
                a+   e  + v l+G  G Gk+tl ki+ +e g
  CTQ27364.1 22 AELHIEDNERVCLVGRNGAGKSTLMKILNREQG 54
                55566777899*****************99976 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.003
      RuvB_N  21 ifieaakkreealdhvllyGpPGlGkttlakiiakelgv 59 
                 ++++   ++ +  d + l+Gp G Gkttl k++  +l++
  CTQ27364.1 333 VLVKDFSAQIQRGDKIALIGPNGCGKTTLLKLMLGQLQA 371
                 555656666677899**************9998777765 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0038       1.1      43      78 ..      21      54 ..      13      71 .. 0.77
   2 ?    6.1   0.0     0.019       5.5      51      81 ..     343     373 ..     321     413 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0038
      DUF815 43 nteqfleglpannvLLwGarGtGKSslvkallneya 78
                n+e ++e+   + v L+G  G+GKS+l+k l +e  
  CTQ27364.1 21 NAELHIED--NERVCLVGRNGAGKSTLMKILNREQG 54
                55555544..46799**************9987765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.019
      DUF815  51 lpannvLLwGarGtGKSslvkallneyaeeg 81 
                 ++  ++ L+G  G+GK +l+k +l ++++++
  CTQ27364.1 343 QRGDKIALIGPNGCGKTTLLKLMLGQLQADS 373
                 4567899*****************9998876 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.088        25       4      24 ..      33      52 ..      31      65 .. 0.76
   2 ?   -1.4   0.0       5.2   1.5e+03      39      61 ..     209     231 ..     206     234 .. 0.91
   3 !    8.0   0.0     0.007         2       4      24 ..     349     370 ..     347     407 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.088
                EEEESTTCCHHHHHHHHHCT- CS
        cobW  4 vltGflGsGKTtLlnhllenr 24
                 l+G  G+GK+tL++ l  ++
  CTQ27364.1 33 CLVGRNGAGKSTLMKILN-RE 52
                689999*******97554.33 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 5.2
                 CHCCCCCCHCCCT.EEEETTTTE CS
        cobW  39 vsiDaellretgveivelenGci 61 
                 +s+D++++r+ ++ iv+l  G++
  CTQ27364.1 209 ISHDRSFIRNMATRIVDLDRGKL 231
                 689****************9986 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.007
                 EEEESTTCCHHHHHHHHH.CT- CS
        cobW   4 vltGflGsGKTtLlnhll.enr 24 
                  l G+ G GKTtLl+ +l + +
  CTQ27364.1 349 ALIGPNGCGKTTLLKLMLgQLQ 370
                 5789***********9997333 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.2   3.4e+02     131     162 ..      31      62 ..      19     143 .. 0.83
   2 !   13.0   0.0   0.00013     0.039     102     161 ..     319     377 ..     239     406 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.2
       T2SSE 131 lilvsGgTgsGKttllyallkeinksderivt 162
                  + + G  g GK+tl+ +l  e   +d ri+ 
  CTQ27364.1  31 RVCLVGRNGAGKSTLMKILNREQGLDDGRIIY 62 
                 55667888999999998888777777777765 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00013
       T2SSE 102 eltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderiv 161
                  ++++++ ++ + k  ++++ ++ +++   i + G+ g GKttll  +l ++++++ ri 
  CTQ27364.1 319 VFEMENVNYQVDGKVLVKDFSAQ-IQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIH 377
                 44555555555555555555444.5778899999********************988874 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0044       1.3       1      65 [.      32     101 ..      32     166 .. 0.75
   2 ?    3.6   0.0      0.22        63       1      22 [.     348     369 ..     348     416 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0044
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---CCS...SSEEEE........T-EB--C CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeaseravkeelkek........ekkledf 65 
                 +++vG   +GKS+++  L +e+ l  g ++  + +++ +l++++    r+v  ++ ++        ++ l+ +
  CTQ27364.1  32 VCLVGRNGAGKSTLMKILNREQGLDDGRIIYEQDLIVARLQQDPP---RNVAGTVYDFvaegiaeqAAYLKAY 101
                 689*************************************99999...5566666666532232223333333 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.22
                 EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlged 22 
                 ia++G    GK+++l  +lg+ 
  CTQ27364.1 348 IALIGPNGCGKTTLLKLMLGQL 369
                 899***************9985 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0     0.011       3.1       2      23 ..      33      54 ..      32      75 .. 0.88
   2 ?    4.9   0.1     0.074        21       1      22 [.     348     369 ..     348     380 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.011
                EEEESTTSSHHHHHHHHHCCST CS
         dNK  2 vveGnIgaGKstlvklLskklg 23
                ++ G  gaGKstl+k+L+++ g
  CTQ27364.1 33 CLVGRNGAGKSTLMKILNREQG 54
                778999***********99876 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.074
                 EEEEESTTSSHHHHHHHHHCCS CS
         dNK   1 ivveGnIgaGKstlvklLskkl 22 
                 i++ G+ g+GK+tl+kl+  +l
  CTQ27364.1 348 IALIGPNGCGKTTLLKLMLGQL 369
                 5667999*********886655 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.056        16      24      44 ..      30      50 ..      16     141 .. 0.88
   2 ?    7.0   0.0    0.0094       2.7      22      43 ..     344     365 ..     323     381 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.056
                EEEEEEESTTSSHHHHHHHHH CS
     G-alpha 24 vkllllGqseSGKsTilkqlk 44
                 ++ l+G ++ GKsT++k l 
  CTQ27364.1 30 ERVCLVGRNGAGKSTLMKILN 50
                4899************88654 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0094
                 .EEEEEEEESTTSSHHHHHHHH CS
     G-alpha  22 revkllllGqseSGKsTilkql 43 
                 r  k+ l+G +++GK+T+lk +
  CTQ27364.1 344 RGDKIALIGPNGCGKTTLLKLM 365
                 3559***************976 PP

>> Phasin  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.13        38      74     111 ..     120     158 ..      83     160 .. 0.73
   2 ?    9.9   0.3    0.0025      0.73      73     125 ..     536     588 ..     520     589 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.13
      Phasin  74 kekaeeqwdklek.afdervakaLsrlgvpsredveaLs 111
                  ++++eq+d+l    +d+r+++++++lg+  +  +++Ls
  CTQ27364.1 120 LARLQEQLDNLGLwQLDSRINEVIEQLGLDANAQLASLS 158
                 4688999999986369*************9999998875 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0025
      Phasin  73 vkekaeeqwdklekafdervakaLsrlgvpsredveaLsarvdeLtkelekla 125
                  k+ a +++ ++ +   e+v++  ++l    ++++e+L +++++L++el+ l+
  CTQ27364.1 536 QKQTAVKKTTEVAQPKAETVKRGGNKLSYNLQRELEQLPQKLEALEAELQTLQ 588
                 46677788889999999********************************9886 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.007         2      19      54 ..      27      62 ..      16     112 .. 0.86
   2 ?   -1.1   0.0       2.3   6.7e+02     304     347 ..     293     343 ..     281     345 .. 0.82
   3 ?    2.0   0.1      0.28        81      23      51 ..     347     375 ..     336     387 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.007
      AAA_10 19 tnasasliiGdlGnGKSvlakllvlyisllggkali 54
                + +  + ++G  G+GKS l+k+l     l +g++++
  CTQ27364.1 27 EDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIY 62
                55677899**************99888888887776 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.3
      AAA_10 304 tdkeeikkvLeflgldveded.......nkkelrelesGqCLmkDllgrvg 347
                  ++ e+++v+   +++ve+++       +++ ++    G+ L+kD   +++
  CTQ27364.1 293 RERGERREVMGSAKMQVEEASrsgkivfEMENVNYQVDGKVLVKDFSAQIQ 343
                 47788899999999999888866666666888999999*******999987 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.28
      AAA_10  23 asliiGdlGnGKSvlakllvlyisllggk 51 
                 + ++iG+ G GK  l kl+  ++++  g+
  CTQ27364.1 347 KIALIGPNGCGKTTLLKLMLGQLQADSGR 375
                 679****************9888776665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.16        46       1      18 [.      31      48 ..      31      55 .. 0.85
   2 ?    0.6   0.5       1.6   4.7e+02      28      81 ..     269     325 ..     259     338 .. 0.78
   3 ?    8.7   0.1    0.0053       1.5       1      26 [.     347     372 ..     347     383 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.16
                EEEEE--TTSSHHHHHHH CS
    NTPase_1  1 kvfiTGppGvGKtTlvkk 18
                +v++ G+ G GK+Tl+k 
  CTQ27364.1 31 RVCLVGRNGAGKSTLMKI 48
                58899**********874 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.6
                 GGEEEEEEEEE-------EEEEEET.T--EEEEEETT...---SSEETTEEE-HHHH CS
    NTPase_1  28 vkvgGfyteevreggrrigFkivdlasgeegiLarve...akreprvgkyvvdvesf 81 
                 +  +G+ +++ r++gr  + k +  + ge+ +         ++  r gk+v+++e++
  CTQ27364.1 269 WIRQGIKARRTRNEGRVRALKAMRRERGERREVMGSAkmqVEEASRSGKIVFEMENV 325
                 4558************99999999999998887655556577888999999988765 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0053
                 EEEEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlellkss 26 
                 k+++ Gp G GKtTl+k +l +l+ +
  CTQ27364.1 347 KIALIGPNGCGKTTLLKLMLGQLQAD 372
                 58899*************99999765 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.025       7.3      18      50 ..      18      50 ..       8      59 .. 0.83
   2 ?    4.7   0.0     0.043        12      14      60 ..     330     376 ..     315     381 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.025
                HHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB 18 llerllakaGraqvvGltGvPGaGkstlvealg 50
                ll+++  +    ++v l G  GaGkstl++ l 
  CTQ27364.1 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILN 50
                66666677778899**************98775 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.043
                 HHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--E CS
        MeaB  14 eakellerllakaGraqvvGltGvPGaGkstlvealglelrrrGkrv 60 
                 + k l++  +a+  r  ++ l G  G Gk tl++ +  +l++   r+
  CTQ27364.1 330 DGKVLVKDFSAQIQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376
                 5678899999999********************99988888776666 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.024       6.9      12      38 ..      27      53 ..      19      57 .. 0.84
   2 ?    4.7   0.1     0.062        18      11      36 ..     342     366 ..     332     384 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.024
                TTEEEEEEEESTTSSHHHHHHHHHHSS CS
         Arf 12 kkelrilllGLDnaGKtTilkklklee 38
                + + r+ l+G  +aGK+T++k l+ e+
  CTQ27364.1 27 EDNERVCLVGRNGAGKSTLMKILNREQ 53
                5567999**************998875 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.062
                 .TTEEEEEEEESTTSSHHHHHHHHHH CS
         Arf  11 kkkelrilllGLDnaGKtTilkklkl 36 
                  ++  +i l+G  + GKtT+lk  +l
  CTQ27364.1 342 IQRGDKIALIGPNGCGKTTLLKL-ML 366
                 467789*************9974.33 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.55   1.6e+02      11      33 ..      27      49 ..      20      57 .. 0.83
   2 ?    1.5   0.0      0.59   1.7e+02     178     235 ..     284     340 ..     271     345 .. 0.80
   3 ?    5.8   0.1     0.028       8.1      15      39 ..     347     371 ..     341     390 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.55
     Pox_A32 11 kkpFrlalvGgsGsGktvyLlsL 33
                +++ r+ lvG  G+Gk + ++ L
  CTQ27364.1 27 EDNERVCLVGRNGAGKSTLMKIL 49
                566799***********988866 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.59
     Pox_A32 178 llkvlnilrsaeqkkrkvl.iiedsvfsegeariCldsaDesviekeldksillkqfsh 235
                  +++l+ +r ++ ++r+v+   +  v  e+  r+  ++ + + ++ ++d ++l+k+fs 
  CTQ27364.1 284 RVRALKAMRRERGERREVMgSAKMQV--EEASRSGKIVFEMENVNYQVDGKVLVKDFSA 340
                 57889999999988888874444444..88889999999999***************95 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.028
     Pox_A32  15 rlalvGgsGsGktvyLlsLlrtlvk 39 
                 ++al+G  G Gkt+ L+ +l +l  
  CTQ27364.1 347 KIALIGPNGCGKTTLLKLMLGQLQA 371
                 79**************999887765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.6     0.003      0.86      10     135 ..     345     493 ..     339     501 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.003
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelgg.vkpeeillvaftgrAakelrerlaalgae.............................atTiHrlall 78 
                  + ++++++ G+GKT++lk ++  l++  g +++ + l va+  +   el    ++++                               a+T       
  CTQ27364.1 345 GDKIALIGPNGCGKTTLLKLMLGQLQADSGrIHVGTKLEVAYFDQHRAELDPDKTVMDNLaegkqevmvngkprhvlgylqdflfhpkrAMTPV----- 438
                 567899*************999988876540455555555555544444443332333332233333333333333333333333333322222..... PP

      AAA_19  79 dfddlltealelle.........eaeeekklqeeellivDE.fqdvdelqyrLlkallgek.kklllv 135
                              +             + +l+  +lli DE + d+d    +Ll++l +    +++lv
  CTQ27364.1 439 -------------RalsggernrLLLARLFLKPSNLLILDEpTNDLDVETLELLEELIDGYqGTVMLV 493
                 .............0222333222111234554555888888556888888888888873333336665 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.19        55      24      46 ..      28      50 ..      20      62 .. 0.76
   2 ?    7.6   0.0    0.0052       1.5      21      70 ..     341     395 ..     332     408 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.19
        DLIC 24 sgksvlvlGedgsGkttliaklq 46
                 +  v ++G +g+Gk+tl+  l 
  CTQ27364.1 28 DNERVCLVGRNGAGKSTLMKILN 50
                578899************97663 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0052
        DLIC  21 klPsgksvlvlGedgsGkttliaklqGveee.....kkGrGleylyldvkdedrd 70 
                 ++  g ++ ++G +g+Gkttl+  + G  +      + G  le +y+d +  + d
  CTQ27364.1 341 QIQRGDKIALIGPNGCGKTTLLKLMLGQLQAdsgriHVGTKLEVAYFDQHRAELD 395
                 566788999************9877665554001114567899***999887776 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.21        62       4      19 ..      32      47 ..      29      55 .. 0.83
   2 ?    7.2   0.2     0.012       3.5       4      27 ..     348     371 ..     346     393 .. 0.76
   3 ?   -1.6   0.0       6.2   1.8e+03      51      82 ..     378     410 ..     375     412 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.21
                EEEEESTTSSHHHHHH CS
       SRP54  4 illvGlqGaGKTttla 19
                + lvG +GaGK t + 
  CTQ27364.1 32 VCLVGRNGAGKSTLMK 47
                689*********9875 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.012
                 EEEEESTTSSHHHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaallkk 27 
                 i+l+G++G GKTt l  +  +l++
  CTQ27364.1 348 IALIGPNGCGKTTLLKLMLGQLQA 371
                 899**********98766555554 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 6.2
                 HHHHTTEEEEESSTTS.CHHHHHHHHHHHHHHT CS
       SRP54  51 laeklgvpvikkkeea.dpaavakeavekakee 82 
                 +++kl+v ++++++++ dp +++ + + + k+e
  CTQ27364.1 378 VGTKLEVAYFDQHRAElDPDKTVMDNLAEGKQE 410
                 689999****9766666******9999998876 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.015       4.4      24      46 ..      30      52 ..      22      61 .. 0.84
   2 ?    2.7   0.0      0.41   1.2e+02      26      51 ..     348     372 ..     345     390 .. 0.84
   3 ?    1.1   0.2       1.2   3.4e+02     111     152 ..     538     590 ..     519     631 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.015
       DUF87 24 rHlAilgsTGsGKSntvavLlee 46
                ++++ +g+ G+GKS+++++L +e
  CTQ27364.1 30 ERVCLVGRNGAGKSTLMKILNRE 52
                578899*************9877 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.41
       DUF87  26 lAilgsTGsGKSntvavLleellekk 51 
                 +A +g  G GK+++ +++l +l   +
  CTQ27364.1 348 IALIGPNGCGKTTLLKLMLGQLQ-AD 372
                 7899999************9997.44 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 1.2
       DUF87 111 kpaaavqrsvleealdqakakeekeklssdepveklleelk...........k 152
                 ++a ++ ++v + + +++k++ +k +++ ++ +e+l ++l+           +
  CTQ27364.1 538 QTAVKKTTEVAQPKAETVKRGGNKLSYNLQRELEQLPQKLEaleaelqtlqdQ 590
                 33333445555555555666666666666666666666666333333333330 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0011      0.32      12      45 ..     113     146 ..     102     160 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0011
  EF-hand_14  12 eetdklsvakllkaLaetGirkdDpRLkellkkl 45 
                 ++++  ++a+l ++L + G+++ D R++e++++l
  CTQ27364.1 113 SDKNLNELARLQEQLDNLGLWQLDSRINEVIEQL 146
                 556666899**********************998 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.23        66       2      21 ..      31      50 ..      30      54 .. 0.86
   2 ?    6.3   0.0     0.022       6.5       2      23 ..     347     368 ..     346     379 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.23
                EEEEEESTTSSHHHHHHHHH CS
      FeoB_N  2 tvalvGnpnvGkttlfnalt 21
                +v+lvG   +Gk+tl+  l 
  CTQ27364.1 31 RVCLVGRNGAGKSTLMKILN 50
                689************98775 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.022
                 EEEEEESTTSSHHHHHHHHHTT CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltga 23 
                 ++al+G   +Gkttl+  + g+
  CTQ27364.1 347 KIALIGPNGCGKTTLLKLMLGQ 368
                 69**************988776 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.031       9.1       7      32 ..      32      57 ..      29      74 .. 0.81
   2 ?    3.4   0.0      0.13        38       7      32 ..     348     373 ..     346     407 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.031
                EEEEEBTTSSCCCCCCTTSSSS---- CS
      Septin  7 lmvvGesglGkttlintlfetdliee 32
                + +vG++g Gk+tl++ l +++  ++
  CTQ27364.1 32 VCLVGRNGAGKSTLMKILNREQGLDD 57
                678*************9988776655 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.13
                 EEEEEBTTSSCCCCCCTTSSSS---- CS
      Septin   7 lmvvGesglGkttlintlfetdliee 32 
                 + ++G +g Gkttl++ ++ +   ++
  CTQ27364.1 348 IALIGPNGCGKTTLLKLMLGQLQADS 373
                 5689***********98887655554 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.5    0.0018      0.53      30      84 ..     531     586 ..     523     593 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0018
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--TTTTTGGGHHHHHHHHHH CS
  Laminin_II  30 keklseinrsveetnekvkdankairdArrsvk.kLeklapqLldklkelkqleea 84 
                  ++l + ++ v++t+e+++ + ++++  +++ + +L+++++qL +kl+ l+   + 
  CTQ27364.1 531 AQSLAQKQTAVKKTTEVAQPKAETVKRGGNKLSyNLQRELEQLPQKLEALEAELQT 586
                 57788888999********8777777777765449************999987766 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.47   1.4e+02      24      42 ..      31      49 ..      21      52 .. 0.84
   2 ?    6.5   0.0     0.016       4.8      24      45 ..     347     368 ..     329     386 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.47
  Mg_chelatase 24 nlllvGppGsGKtmlakrl 42
                   + lvG  G+GK+ l k l
    CTQ27364.1 31 RVCLVGRNGAGKSTLMKIL 49
                  6889**********99877 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.016
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsl 45 
                   ++ l+Gp G+GKt l k + + 
    CTQ27364.1 347 KIALIGPNGCGKTTLLKLMLGQ 368
                   789***********99887655 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       4.8   1.4e+03     136     159 ..     241     264 ..     213     331 .. 0.63
   2 ?   11.6   0.4   0.00078      0.22      65     149 ..     529     616 ..     488     628 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 4.8
     UPF0242 136 lkleleeqLaekqellqeyqetie 159
                 ++l+ ee+L+ ++++  e+ +++ 
  CTQ27364.1 241 YLLDKEEALRVEELQNAEFDRKLA 264
                 444444444444444444333332 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00078
     UPF0242  65 lekskleekeaklteldeglktkeealeelqee.eeeLkeeldakeeelerlkeenqqLqekleaiae..dfeelkleleeqLaekqe 149
                  +++ l++k+  ++++ e  + k+e+++   ++   +L++el++  ++le l+ e q Lq +  +     + ++  +++ +qLae ++
  CTQ27364.1 529 QQAQSLAQKQTAVKKTTEVAQPKAETVKRGGNKlSYNLQRELEQLPQKLEALEAELQTLQDQVADPDFfgQPHDRTQQVLAQLAEAEQ 616
                 389999***********99999999999865551568999999999999999999999998877633244334444444444444443 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.35     1e+02       1      20 [.      35      54 ..      35      58 .. 0.83
   2 ?   -0.9   0.2         7     2e+03      36      77 ..     281     321 ..     273     345 .. 0.72
   3 ?    4.6   0.4      0.14        39       2      18 ..     352     368 ..     351     441 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.35
                EE-TTSSHHHHHHHHHHHHT CS
      AAA_17  1 lGgPGsGKgtqceklvekyg 20
                +G  G+GK+t+++ l ++ g
  CTQ27364.1 35 VGRNGAGKSTLMKILNREQG 54
                6889********98887765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 7
                 TTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEE CS
      AAA_17  36 rgglakardemrklpleekkelqkeaaekiaeeakkkgvlvd 77 
                 ++g ++a ++mr++  e ++e++  a+ +++e++++++++++
  CTQ27364.1 281 NEGRVRALKAMRRERGE-RREVMGSAKMQVEEASRSGKIVFE 321
                 44667788888877644.555778888888888877777654 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.14
                 E-TTSSHHHHHHHHHHH CS
      AAA_17   2 GgPGsGKgtqceklvek 18 
                 G+ G+GK+t+++ +  +
  CTQ27364.1 352 GPNGCGKTTLLKLMLGQ 368
                 88999999999655544 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2       2.4   6.9e+02      31      60 ..     114     141 ..     101     156 .. 0.70
   2 ?    8.9   1.5     0.007         2      28      59 ..     560     592 ..     532     595 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 2.4
     NPV_P10  31 qenlpdvtelnekLdaqsaqLaeletkven 60 
                 ++nl+++  l+e+Ld++   L +l++ +++
  CTQ27364.1 114 DKNLNELARLQEQLDNLG--LWQLDSRINE 141
                 678888888999998874..4555555554 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.007
     NPV_P10  28 ddvqenlp.dvtelnekLdaqsaqLaeletkve 59 
                 ++++ nl+ ++++l +kL+a+ a+L++l+++v 
  CTQ27364.1 560 NKLSYNLQrELEQLPQKLEALEAELQTLQDQVA 592
                 556666652578899**************9996 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       8.2   2.4e+03      41      72 ..     385     416 ..     376     419 .. 0.79
   2 ?    9.4   5.3     0.005       1.4      35      97 ..     530     592 ..     528     595 .. 0.94
   3 ?    5.4   3.0     0.086        25      35      60 ..     569     594 ..     566     629 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 8.2
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH CS
    Spectrin  41 kkhkaleaelaaqqervkalnelaeklldegh 72 
                   +++++ael+  ++ +++l e +++++ +g+
  CTQ27364.1 385 AYFDQHRAELDPDKTVMDNLAEGKQEVMVNGK 416
                 378999***************99999966554 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.005
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  35 evqallkkhkaleaelaaqqervkalnelaeklldeghsaseeieerleelnerWeeLkelaa 97 
                 ++q+l +k +a++++ + +q++ ++++  ++kl  + + + e++ ++le+l+   + L++++a
  CTQ27364.1 530 QAQSLAQKQTAVKKTTEVAQPKAETVKRGGNKLSYNLQRELEQLPQKLEALEAELQTLQDQVA 592
                 689*********************************9*******************9999987 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.086
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  35 evqallkkhkaleaelaaqqervkal 60 
                 e+++l +k++aleael++ q++v + 
  CTQ27364.1 569 ELEQLPQKLEALEAELQTLQDQVADP 594
                 78999999999999999999999765 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.015       4.2      17      37 ..      29      49 ..      22      50 .. 0.83
   2 ?   -1.8   0.6       1.4     4e+02     615     677 ..     254     315 ..     240     344 .. 0.56
   3 ?    3.5   0.1     0.034       9.7      18      36 ..     346     364 ..     335     365 .. 0.84
   4 ?    4.9   3.7     0.013       3.7     830     923 ..     530     624 ..     520     633 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.015
     DUF3584 17 dghtnieGtNaaGKTtLlrLi 37
                ++++ ++G N+aGK tL++++
  CTQ27364.1 29 NERVCLVGRNGAGKSTLMKIL 49
                6789999***********976 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
     DUF3584 615 lqsaeakqkqaeeelkqlnaeleeakravaeaatalknardtlerlqnekesekdklekaiae 677
                 lq+ae  +k a+ee+  +++ +++++   + + +alk  r +++  ++++ s+k ++e+a  +
  CTQ27364.1 254 LQNAEFDRKLAQEEV-WIRQGIKARRTRNEGRVRALKAMRRERGERREVMGSAKMQVEEASRS 315
                 333333333333222.24455555555555555666666666666666666666666555544 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.034
     DUF3584  18 ghtnieGtNaaGKTtLlrL 36 
                 ++  + G N+ GKTtLl+L
  CTQ27364.1 346 DKIALIGPNGCGKTTLLKL 364
                 667789***********99 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.013
     DUF3584 830 aaeeleqeltrliedtklerkklekerkalekqldqldenlrklrdllskl.aelkldadaeqaegelaerlaaleelkrkrerlsedvkkaler 923
                 +a+ l q++t+ ++ t+  + k e+ +   +k+  +l+ +l +l + l++l ael+  +d+       ++ +++ ++++ +++ +++++++a+er
  CTQ27364.1 530 QAQSLAQKQTAVKKTTEVAQPKAETVKRGGNKLSYNLQRELEQLPQKLEALeAELQTLQDQVADPDFFGQPHDRTQQVLAQLAEAEQALEAAFER 624
                 44444444444444444444444554444555555555555555555555544444444433333344444555555555555555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1343  (0.0749066); expected 358.6 (0.02)
Passed bias filter:                      905  (0.0504769); expected 358.6 (0.02)
Passed Vit filter:                       197  (0.0109878); expected 17.9 (0.001)
Passed Fwd filter:                        69  (0.00384851); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              62  [number of targets reported over threshold]
# CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.43
# Mc/sec: 4424.16
//
Query:       CTQ27365.1  [L=422]
Description: paraquat-inducible membrane protein A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-92  307.4  31.9    2.4e-54  183.4  15.4    2.1  2  PqiA            Paraquat-inducible protein A
    0.00054   19.9  10.0      0.044   13.8   2.0    2.5  2  DZR             Double zinc ribbon
  ------ inclusion threshold ------
       0.15   12.0   0.2       0.15   12.0   0.2    3.7  3  DUF2116         Uncharacterized protein containing a Zn-ribbo
       0.17   11.0   2.0       0.19   10.8   0.2    2.0  2  Tmemb_55A       Transmembrane protein 55A
       0.25   11.6   0.0       0.25   11.6   0.0    5.3  5  zf-LITAF-like   LITAF-like zinc ribbon domain
       0.83    9.8   4.9       0.83    9.8   0.1    2.3  2  zf-UDP          Zinc-binding RING-finger
        1.1    9.3   9.4        2.8    8.0   1.8    2.6  2  zinc-ribbons_6  zinc-ribbons
        1.4    9.1   5.7        3.2    7.9   1.6    2.5  2  Spt4            Spt4/RpoE2 zinc finger
        1.9    8.5   8.6        6.7    6.7   2.5    2.8  2  zinc_ribbon_4   zinc-ribbon domain
        2.3    8.2   6.0         11    6.1   0.2    3.2  3  Anti-TRAP       Tryptophan RNA-binding attenuator protein inh
        3.3    7.2  14.3        3.5    7.2   0.1    3.3  3  zf-ribbon_3     zinc-ribbon domain
        3.4    7.3  10.2         27    4.5   0.6    3.6  3  zf_UBZ          Ubiquitin-Binding Zinc Finger
        7.2    6.6   7.8        1.4    8.9   1.8    2.6  2  Nudix_N_2       Nudix N-terminal
        7.3    6.7  10.2        7.5    6.6   0.3    2.7  3  HypA            Hydrogenase/urease nickel incorporation, meta


Domain annotation for each model (and alignments):
>> PqiA  Paraquat-inducible protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.2   8.5   4.4e-41   5.6e-38       2     155 ..      49     200 ..      48     201 .. 0.97
   2 !  183.4  15.4   1.9e-57   2.4e-54       1     154 [.     253     408 ..     253     409 .. 0.95

  Alignments for each domain:
  == domain 1  score: 130.2 bits;  conditional E-value: 4.4e-41
        PqiA   2 qrtlalalaalillipAnllpimslsllgstseatllsgvlalweegswlvAllvflasilvPllklllllllllslklgrrprgsrrllrlleflgrW 100
                 qr++a+al al++l++Anl+p++ +++ g++se+ ll++   l++e++  +++ ++l++ lvP+++l+++lll+ ++++  ++  ++ l+r+l +l+ W
  CTQ27365.1  49 QRPTAYALVALFMLLLANLFPFIYMKVGGISSEIELLEIPNVLFTEDYASLGTFFLLFVQLVPAFCLVTILLLVNRVRM--PAGLKTFLARILFQLKTW 145
                 799**************************************************************************44..56666************* PP

        PqiA 101 sMldVfvvgilvalvklgdlasiepgpgllafallvlltmlaassfdprllWdrl 155
                 +M+++f+ g+lv++vkl+++ +i +g++++ +++++ll++ +++++d+r+lWd++
  CTQ27365.1 146 GMAEIFLAGVLVSFVKLMAYGDIGIGLSFVPWCMFCLLQLRTFQCVDRRWLWDDI 200
                 ****************************************************986 PP

  == domain 2  score: 183.4 bits;  conditional E-value: 1.9e-57
        PqiA   1 lqrtlalalaalillipAnllpimslsllgstseatllsgvlalweegswlvAllvflasilvPllklllllllllslklg..rrprgsrrllrllefl 97 
                 lq+tlal+++++il++pAn++pim ++llg + ++t++ gv+ lw+egs++vAl++f+asi+vP+lk++++++l++ ++ +  r  ++++ +++++ef+
  CTQ27365.1 253 LQWTLALLVTSFILYLPANIMPIMITDLLGDKMPSTIMAGVILLWSEGSYPVALVIFIASIMVPTLKMIAIAWLCWNANGNgaRDSERMHLIYEVVEFV 351
                 699***************************************************************************665334444449********* PP

        PqiA  98 grWsMldVfvvgilvalvklgdlasiepgpgllafallvlltmlaassfdprllWdr 154
                 grWsM+dVfv+++l alv++g+l++i+p +g+++fal+v++tm++a++fdprllWdr
  CTQ27365.1 352 GRWSMIDVFVIAVLSALVRMGGLMNIYPAIGAVMFALVVVMTMFSAMTFDPRLLWDR 408
                 *******************************************************97 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   2.0   3.5e-05     0.044       4      42 ..       2      44 ..       1      46 [. 0.83
   2 !   10.2   1.2   0.00045      0.57      30      48 ..     223     241 ..     188     251 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.5e-05
         DZR  4 CgeelppdarfCseCgtklkavaa.....edrCpsCgekvdpea 42
                C + + ++ + C++C   +   ++     + +Cp+Cg+ ++ ++
  CTQ27365.1  2 CDHHHAARHILCPQCDLLVA-LPQlehrqKAACPRCGTTLTTTW 44
                9999***********99864.444466999*******9988776 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00045
         DZR  30 rCpsCgekvdpearfCpeC 48 
                  C  C++ ++ ++++Cp C
  CTQ27365.1 223 SCACCTAVLPVDQTVCPRC 241
                 4555555555555555555 PP

>> DUF2116  Uncharacterized protein containing a Zn-ribbon (DUF2116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2         2   2.5e+03       8      13 ..      35      40 ..      28      70 .. 0.55
   2 ?   12.0   0.2   0.00012      0.15       5      50 ..     223     265 ..     221     274 .. 0.80
   3 ?   -0.2   1.1       0.8     1e+03      39      58 ..     375     394 ..     366     398 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2
     DUF2116  8 vCGkaI 13
                 CG+  
  CTQ27365.1 35 RCGTTL 40
                444432 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00012
     DUF2116   5 HCivCGkaIpldesfCsekCqeeyekkrkkvarsqqilfgililll 50 
                  C+ C +  p d+ +C ++C+++ + +rk    +q+ l++ +  ++
  CTQ27365.1 223 SCACCTAVLPVDQTVC-PRCNSKGTARRKN--SLQWTLALLVTSFI 265
                 6***************.79****9999988..66666666555544 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.8
     DUF2116  39 qqilfgililllavvlvlkf 58 
                 + i+ +i +++ a+v+v+++
  CTQ27365.1 375 MNIYPAIGAVMFALVVVMTM 394
                 56666666666666666655 PP

>> Tmemb_55A  Transmembrane protein 55A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00015      0.19     146     202 ..       8      65 ..       2      77 .. 0.89
   2 ?   -2.2   0.1       1.4   1.8e+03     170     180 ..     238     248 ..     222     319 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
   Tmemb_55A 146 gvrviCghCkntflftels.rtlarCPhCrkvssvGrryarkrsllllllglillvia 202
                 + ++ C  C       +l+ r  a CP+C  +     + +r+r ++++l++l +l+ a
  CTQ27365.1   8 ARHILCPQCDLLVALPQLEhRQKAACPRCGTTLTTTWDAPRQRPTAYALVALFMLLLA 65 
                 56799****99999999999*******************************9998876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
   Tmemb_55A 170 CPhCrkvssvG 180
                 CP+C       
  CTQ27365.1 238 CPRCNSKGTAR 248
                 55554443333 PP

>> zf-LITAF-like  LITAF-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.8       1.3   1.6e+03      58      65 ..      12      19 ..       1      22 [. 0.62
   2 ?   11.6   0.0   0.00019      0.25       2      49 ..      27      72 ..      26      77 .. 0.71
   3 ?   -0.8   0.2       1.5     2e+03      34      48 ..     104     121 ..      93     128 .. 0.43
   4 ?   -0.8   0.5       1.5   1.9e+03      36      44 ..     174     182 ..     142     193 .. 0.61
   5 ?    8.2   0.1    0.0024         3       5      49 ..     235     277 ..     232     284 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.3
  zf-LITAF-like 58 yCpnCgal 65
                    Cp+C  l
     CTQ27365.1 12 LCPQCDLL 19
                   47777655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00019
  zf-LITAF-like  2 eptqvdCpaCqqrvvTsveyksgkltwllalllclfgcllccliPfcv 49
                   + ++  Cp+C+++ +T+     +  t  ++++l+++++    l+Pf++
     CTQ27365.1 27 HRQKAACPRCGTTLTTTWDAPRQRPTAYALVALFMLLL--ANLFPFIY 72
                   678999***********999888877766544444442..34457764 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.5
  zf-LITAF-like  34 lclfgc...llccliPfc 48 
                    l+++ +   +++++i ++
     CTQ27365.1 104 LLFVQLvpaFCLVTILLL 121
                    222222222223333444 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.5
  zf-LITAF-like  36 lfgcllccl 44 
                    ++ ++++cl
     CTQ27365.1 174 FVPWCMFCL 182
                    222222222 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0024
  zf-LITAF-like   5 qvdCpaCqqrvvTsveyksgkltwllalllclfgc.llccliPfcv 49 
                    q+ Cp+C+ + + + +++ +++  ll+     f++ l   ++P+++
     CTQ27365.1 235 QTVCPRCNSKGTARRKNSLQWTLALLV---TSFILyLPANIMPIMI 277
                    689*******98776655555444443...2222224556667766 PP

>> zf-UDP  Zinc-binding RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00064      0.83      27      68 ..      10      48 ..       4      51 .. 0.86
   2 ?    0.7   1.5      0.44   5.6e+02      51      60 ..     236     245 ..     219     254 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00064
      zf-UDP 27 FvacnecafpvcrpcyeyerkdgnqsCPqCktrykrlkgspr 68
                 ++c +c  +v  p +e ++k +   CP+C t+ + + ++pr
  CTQ27365.1 10 HILCPQCDLLVALPQLEHRQKAA---CPRCGTTLTTTWDAPR 48
                589***************99988...******9987766665 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.44
      zf-UDP  51 qsCPqCktry 60 
                  +CP+C+++ 
  CTQ27365.1 236 TVCPRCNSKG 245
                 68****9874 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.8    0.0022       2.8      14      40 ..       8      41 ..       1      44 [. 0.81
   2 ?    4.9   1.1      0.02        25      17      38 ..     222     244 ..     211     250 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0022
                    SSEEE-TTT--.......EEEEEEE-SSS-S--- CS
  zinc-ribbons_6 14 geqyhCeaCqe.......dlkkealCpeCeqele 40
                     +++ C +C+        + +++a Cp+C+  l 
      CTQ27365.1  8 ARHILCPQCDLlvalpqlEHRQKAACPRCGTTLT 41
                    45799999*99999999999999******99885 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.02
                     EE-TTT--EEE.EEEE-SSS-S- CS
  zinc-ribbons_6  17 yhCeaCqedlk.kealCpeCeqe 38 
                      +C +C++ l   +++Cp+C+++
      CTQ27365.1 222 RSCACCTAVLPvDQTVCPRCNSK 244
                     5799999977515789****976 PP

>> Spt4  Spt4/RpoE2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.13   1.7e+02       4      29 ..      13      42 ..      10      52 .. 0.67
   2 ?    7.9   1.6    0.0025       3.2       1      25 [.     221     242 ..     221     261 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.13
        Spt4  4 CllCklvktedqF...eeegCpnC.eilel 29
                C +C l++   q    ++  Cp C ++l+ 
  CTQ27365.1 13 CPQCDLLVALPQLehrQKAACPRCgTTLTT 42
                777887766555411146789999777765 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0025
        Spt4   1 lrACllCklvktedqFeeegCpnCe 25 
                 lr C  C++v + dq   + Cp C+
  CTQ27365.1 221 LRSCACCTAVLPVDQ---TVCPRCN 242
                 599************...******2 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   2.5    0.0052       6.7       4      34 ..      12      39 ..      10      41 .. 0.80
   2 ?    4.2   0.4     0.033        43       3      11 ..     236     244 ..     235     246 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0052
  zinc_ribbon_4  4 tCpsCkakyeiddeklpakgvkvrCskCghv 34
                    Cp+C    +++     ++++k+ C++Cg++
     CTQ27365.1 12 LCPQCDLLVALPQL---EHRQKAACPRCGTT 39
                   58888888888874...78899*******97 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.033
  zinc_ribbon_4   3 itCpsCkak 11 
                    ++Cp+C++k
     CTQ27365.1 236 TVCPRCNSK 244
                    78*****87 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2    0.0083        11      13      37 ..      13      37 ..       7      46 .. 0.86
   2 ?    2.3   0.4      0.13   1.6e+02      11      22 ..     236     247 ..     225     253 .. 0.72
   3 ?    0.4   0.0      0.52   6.7e+02      13      25 ..     327     339 ..     322     343 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0083
                -TTTTTTSEETTE......E-TTTT CS
   Anti-TRAP 13 CdaCngsGkiepeeprasleCPkCs 37
                C++C+     +  e+r    CP+C+
  CTQ27365.1 13 CPQCDLLVALPQLEHRQKAACPRCG 37
                9999999999999***********6 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.13
                 EE-TTTTTTSEE CS
   Anti-TRAP  11 tkCdaCngsGki 22 
                 t C+ Cn  G +
  CTQ27365.1 236 TVCPRCNSKGTA 247
                 567777776665 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.52
                 -TTTTTTSEETTE CS
   Anti-TRAP  13 CdaCngsGkiepe 25 
                 C++ ng G  ++e
  CTQ27365.1 327 CWNANGNGARDSE 339
                 ********99887 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.4     0.073        93       8      22 ..       2      16 ..       2      19 .. 0.66
   2 ?    7.2   0.1    0.0027       3.5       2      13 ..      30      41 ..      29      45 .. 0.72
   3 ?    2.6   4.7     0.075        96       5      22 ..     224     241 ..     221     244 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.073
  zf-ribbon_3  8 CGa.plssddnvCpyC 22
                 C++ + +++ + Cp C
   CTQ27365.1  2 CDHhH-AARHILCPQC 16
                 66655.6677777777 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0027
  zf-ribbon_3  2 tvrCPnCGa.pls 13
                 +  CP+CG+ + +
   CTQ27365.1 30 KAACPRCGTtL-T 41
                 56799999955.4 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.075
  zf-ribbon_3   5 CPnCGaplssddnvCpyC 22 
                  C  C a+l  d++vCp C
   CTQ27365.1 224 CACCTAVLPVDQTVCPRC 241
                  5567788899******99 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.039        50       2      17 ..      10      25 ..       9      28 .. 0.78
   2 ?    4.4   0.0     0.022        29       4      13 ..      32      41 ..      29      47 .. 0.81
   3 ?    4.5   0.6     0.021        27       1      10 [.     234     243 ..     234     244 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.039
      zf_UBZ  2 tylCerCgkeipesel 17
                ++lC++C+  +  ++l
  CTQ27365.1 10 HILCPQCDLLVALPQL 25
                579****998887754 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.022
      zf_UBZ  4 lCerCgkeip 13
                 C+rCg+++ 
  CTQ27365.1 32 ACPRCGTTLT 41
                6*****9875 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.021
      zf_UBZ   1 dtylCerCgk 10 
                 d+ +C+rC++
  CTQ27365.1 234 DQTVCPRCNS 243
                 5789****97 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.8    0.0011       1.4       3      31 ..      13      39 ..      12      40 .. 0.84
   2 ?   -0.3   0.4      0.84   1.1e+03      24      29 ..     237     242 ..     236     243 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
                -TTT--B-EEE--TT-SS-EEEETTTTEE CS
   Nudix_N_2  3 CsqCGtpvelripdgDnreRlvCpaCgti 31
                C+qC   +  ++p+ ++r+ + Cp+Cgt+
  CTQ27365.1 13 CPQC--DLLVALPQLEHRQKAACPRCGTT 39
                7888..455678999************96 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.84
                 EETTTT CS
   Nudix_N_2  24 vCpaCg 29 
                 vCp+C+
  CTQ27365.1 237 VCPRCN 242
                 9**997 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.3    0.0058       7.5      69      96 ..       9      40 ..       3      46 .. 0.74
   2 ?    4.8   1.8     0.021        27      72      97 ..     223     246 ..     211     253 .. 0.82
   3 ?   -1.9   0.0       2.6   3.3e+03       7      56 ..     344     394 ..     340     401 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0058
                -EEEETTTS-EEECHH...H.HHS-TTTSSS- CS
        HypA 69 vkvrCreCgkefelee...k.alrCpkCgsad 96
                 ++ C +C+  + l +   + ++ Cp+Cg++ 
  CTQ27365.1  9 RHILCPQCDLLVALPQlehRqKAACPRCGTTL 40
                5688*****999876654325679****9875 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.021
                 EETTTS-EEECHHHHHS-TTTSSS-E CS
        HypA  72 rCreCgkefeleekalrCpkCgsadv 97 
                  C  C +   +++  + Cp+C+s+++
  CTQ27365.1 223 SCACCTAVLPVDQ--TVCPRCNSKGT 246
                 6999999999884..48*****9876 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHH.CCTT..EEEEEEEEEETTCT--HHHHHHHHHHHHCC.T CS
        HypA   7 aesivevveeea.keaaarkvtkvkvevGelsgvepeaLefafellaegtv 56 
                 + ++ve v ++   +  +  v +  v++G l ++ p + + +f l+   t+
  CTQ27365.1 344 IYEVVEFVGRWSmIDVFVIAVLSALVRMGGLMNIYPAIGAVMFALVVVMTM 394
                 555666666655333445567777889999999999888888887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1038  (0.057895); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3024.21
//
Query:       CTQ27366.1  [L=551]
Description: paraquat-inducible protein B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-39  132.3   0.8    2.9e-15   56.3   0.0    3.5  3  MlaD           MlaD protein
    0.00053   19.2   0.4    0.00078   18.7   0.4    1.1  1  DHC_N2         Dynein heavy chain, N-terminal region 2
    0.00072   19.8   2.1     0.0036   17.5   1.3    2.2  2  DUF948         Bacterial protein of unknown function (DUF948)
     0.0091   16.3   3.1      0.021   15.1   2.7    1.7  1  Mrpl_C         54S ribosomal protein L8 C-terminal domain
  ------ inclusion threshold ------
      0.015   15.1   1.9      0.033   14.0   0.6    2.2  2  DASH_Duo1      DASH complex subunit Duo1
       0.15   12.2   1.2       0.26   11.4   1.2    1.3  1  DUF2959        Protein of unknown function (DUF2959)
       0.16   12.3   2.4       0.42   10.9   2.4    1.8  1  BLOC1_2        Biogenesis of lysosome-related organelles comp
        0.2   10.2   0.5       0.27    9.7   0.5    1.1  1  FUSC           Fusaric acid resistance protein family
       0.22   11.6   1.6       0.49   10.5   1.6    1.5  1  DHR10          Designed helical repeat protein 10 domain
       0.92    9.0   3.3        1.7    8.2   3.3    1.3  1  Fzo_mitofusin  fzo-like conserved region
        4.9    7.8   5.5        7.1    7.3   1.0    2.6  2  SlyX           SlyX


Domain annotation for each model (and alignments):
>> MlaD  MlaD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.1   5.9e-13   9.7e-10       2      81 .]      48     139 ..      47     139 .. 0.97
   2 !   34.1   0.0   1.5e-11   2.5e-08       2      61 ..     163     228 ..     162     254 .. 0.80
   3 !   56.3   0.0   1.8e-18   2.9e-15       2      81 .]     291     395 ..     290     395 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 5.9e-13
        MlaD   2 gytvtaqfdnangLkvg.apVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsiped..........sraqvstggll.gekyialdpg 81 
                 g +vt+ ++na+g++ g ++++ r v+vG V+s tl +d ++v+++++l++ +++++ +d           r ++s+ g+l ++ yi+l+pg
  CTQ27366.1  48 GPEVTLITTNAEGIEGGkTRIKSRSVDVGVVESATLTDDLTHVEIKARLNSGMQKLLHNDsvfwvvkpqvGREGISGLGTLlSGAYIELQPG 139
                 67899***************************************************************************99********98 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 1.5e-11
        MlaD   2 gytvtaqfdnangLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsiped......s 61 
                 g+++ ++ + a+ L++g+pV +rG +vG+V++ t+d ++rr+t+++ +++  +++++++      s
  CTQ27366.1 163 GIRILLESSKAGQLSPGDPVLFRGYRVGSVETSTFDTQKRRITYQLFINAPNDRLVTTNvrfwkdS 228
                 6778889999999************************************99999999885555440 PP

  == domain 3  score: 56.3 bits;  conditional E-value: 1.8e-18
        MlaD   2 gytvtaqfdnang.LkvgapVryrGvtvGrVtsitl......dp..dtrrvtvtvdld...............kksetsipedsraqvstggll.geky 75 
                 ++++++ f+++++ L++gapV++rG++ G+V ++ +      +   d++r++v+v+++               ++ +++i++++r +++tg+l+ g+ y
  CTQ27366.1 291 HIDYVMFFKDSVRgLQPGAPVEFRGIRLGTVGKVPFfipglkQRlnDDYRIPVEVRVEpqrlinqlggdpnirAHIDDLINRGLRGSLKTGNLVtGALY 389
                 57899*******99********************88777776336699999*********************99999999******************* PP

        MlaD  76 ialdpg 81 
                 i+ld++
  CTQ27366.1 390 IDLDFY 395
                 ***985 PP

>> DHC_N2  Dynein heavy chain, N-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.4   4.8e-07   0.00078     170     289 ..     415     530 ..     401     536 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.8e-07
                 EE...THHHHHHHHHHHHHHHHTCSSSTT..THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.THHHHHHTHHHHHHHHHHHHHHHHHHHHHHT CS
      DHC_N2 170 ilkg.vdeiielledhivklqsmksspyvkpfeeeveewekklsrlqeildewlkvQrkWlyLepifssedirkqlpeeakrFksvdkewkkimkevsk 267
                 +++g + +i+++l d + k++++  +p +++  +++ + ek+++++q++ld+++k+ ++  + +     +   ++l++  + F+  +  ++k++ ++++
  CTQ27366.1 415 TISGgLAQIQQRLMDALDKINNLPINPLLEQATSTLAQSEKTMQHVQTTLDNLNKITSSQSMQQLPADMQTTLRELNRSMQGFQPGSAAYNKMVADMQR 513
                 4555599**********************98**************************999888888777789999999999****************99 PP

                 TSGGGG...STTHHHHHHHHHH CS
      DHC_N2 268 dpnvleatskpgllekleelne 289
                   +vl+     +l+  l++ln+
  CTQ27366.1 514 LDQVLR-----ELQPVLKTLND 530
                 878888.....55555555555 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   1.1   0.00033      0.54      42      75 ..     439     472 ..     419     476 .. 0.80
   2 !   17.5   1.3   2.2e-06    0.0036      20      87 ..     449     521 ..     446     523 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00033
      DUF948  42 vdpilkevedllakvnelledvneklekvdplte 75 
                 ++p+l++++ +la+++++++ v+  l++++++t+
  CTQ27366.1 439 INPLLEQATSTLAQSEKTMQHVQTTLDNLNKITS 472
                 7899999999999999999999999999999987 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 2.2e-06
      DUF948  20 vllklkktldeaaatieele.....kqvdpilkevedllakvnelledvneklekvdplteavadlgesvsel 87 
                 +l + +kt++++++t+++l+     + ++++  +++++l++ n+ +++ +  +++ +++++ ++ l + ++el
  CTQ27366.1 449 TLAQSEKTMQHVQTTLDNLNkitssQSMQQLPADMQTTLRELNRSMQGFQPGSAAYNKMVADMQRLDQVLREL 521
                 788899**************999999****************************************9999988 PP

>> Mrpl_C  54S ribosomal protein L8 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.7   1.3e-05     0.021      23      88 ..     448     520 ..     445     540 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.3e-05
      Mrpl_C  23 ttladeskakayaplTlqnLkKmlkfkskeqllkeilavrkflkeeq......elewdee.eekeavkalldq 88 
                 +tla+ +k  ++ + Tl nL+K++  +s +ql +++++  + l +++      ++++++   +++++ ++l++
  CTQ27366.1 448 STLAQSEKTMQHVQTTLDNLNKITSSQSMQQLPADMQTTLRELNRSMqgfqpgSAAYNKMvADMQRLDQVLRE 520
                 6899********************************8765555544434444333344431234444444444 PP

>> DASH_Duo1  DASH complex subunit Duo1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.6     2e-05     0.033      12      43 ..     439     470 ..     425     473 .. 0.90
   2 ?   -1.4   0.0       1.3   2.1e+03       4       4 ..     509     509 ..     479     533 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2e-05
   DASH_Duo1  12 inevienviesLkkaksniervketvestntL 43 
                 in+ +e+ +++L ++++ +++v++t+++ n++
  CTQ27366.1 439 INPLLEQATSTLAQSEKTMQHVQTTLDNLNKI 470
                 899**************************998 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.3
   DASH_Duo1   4 k 4  
                 +
  CTQ27366.1 509 A 509
                 1 PP

>> DUF2959  Protein of unknown function (DUF2959)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.2   0.00016      0.26      52     142 ..     439     531 ..     420     539 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
     DUF2959  52 LekeyeklnkeyeesekaaeevrerieaveevaealfkeWeeeldqyssaslr..reSeqklketrkkykellkamkkaek...kmePvlaalkdq 142
                 ++   e+ ++++ +sek+ ++v++ +++++++++    +  ++l +  +++lr  ++S q ++   + y+++++ m++ ++   +++Pvl++l+d+
  CTQ27366.1 439 INPLLEQATSTLAQSEKTMQHVQTTLDNLNKITSS---QSMQQLPADMQTTLRelNRSMQGFQPGSAAYNKMVADMQRLDQvlrELQPVLKTLNDK 531
                 45556777888999999999999999999999764...44455555555666622579999************9999876533389********97 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.4   0.00026      0.42      21      94 ..     460     531 ..     440     533 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00026
     BLOC1_2  21 dyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeLEak 94 
                    +L +lN+ +s+  +++++  a+++++l +ln+  + +qp     +++ ++ ++L ++  eL    k L +k
  CTQ27366.1 460 VQTTLDNLNKITSS--QSMQQLPADMQTTLRELNRSMQGFQPGSAAYNKMVADMQRLDQVLRELQPVLKTLNDK 531
                 34567788887776..79***************************************************99988 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.5   0.00017      0.27     218     327 ..     417     534 ..     411     547 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00017
        FUSC 218 aralrrllsrmlallallssla..rllarlraeeaaavpe...laallaelaaleaaaaaealeaalaalrarlralrrale...adadtaalllarla 308
                 ++ l+++++r++++l  ++ l    ll++  ++ a+++++   ++++l+ l ++++++++++l+a++++  ++l++  +  +   a+ +   + ++rl+
  CTQ27366.1 417 SGGLAQIQQRLMDALDKINNLPinPLLEQATSTLAQSEKTmqhVQTTLDNLNKITSSQSMQQLPADMQTTLRELNRSMQGFQpgsAAYNKMVADMQRLD 515
                 678889999999999998876511344444444443333345588888888887666777777777777666665555555566666666667788888 PP

        FUSC 309 ellaelaqllaslraleaa 327
                 ++l+el+ +l++l++ ++a
  CTQ27366.1 516 QVLRELQPVLKTLNDKSNA 534
                 8888888888888877665 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.6    0.0003      0.49       4     105 ..     443     543 ..     442     545 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0003
       DHR10   4 laeekeelaelErkarelqakidalqvvekdlrsciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqae 102
                 l+++ ++la+ E+  + +q+++d l++++   +s  +l  + ++ l++l+ +++  +  ++a++++ ++ + l++  + lq  l+  ++k + l  +a+
  CTQ27366.1 443 LEQATSTLAQSEKTMQHVQTTLDNLNKITS-SQSMQQLPADMQTTLRELNRSMQGFQPGSAAYNKMVADMQRLDQVLRELQPVLKTLNDKSNALVFEAK 540
                 78999***********************76.699999****************************************************9999888888 PP

       DHR10 103 ekr 105
                 +k+
  CTQ27366.1 541 DKK 543
                 876 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.3     0.001       1.7      73     148 ..     457     535 ..     443     543 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.001
  Fzo_mitofusin  73 veyatekLrlivsltsancshqvqqelsstfarlcqqvdete...keleeeikelekeiekleevqkkakllrnkasll 148
                    +++ ++ L    ++ts++  +q+  ++++t+ +l+++ +  +   +  ++ ++++++  + l e+q  +k+l +k + l
     CTQ27366.1 457 MQHVQTTLDNLNKITSSQSMQQLPADMQTTLRELNRSMQGFQpgsAAYNKMVADMQRLDQVLRELQPVLKTLNDKSNAL 535
                    579999999999***********************99988762224455555555555566666777788888888877 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   1.0    0.0043       7.1       9      55 ..     454     502 ..     446     510 .. 0.84
   2 ?    1.9   0.2      0.22   3.6e+02      20      47 ..     512     539 ..     504     550 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0043
                 HHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX   9 EiklafqedtieeLndvvaeq..qqqidrlqrqlrllaerlkeleessg 55 
                 E  + + + t++ Ln++   q  qq  + +q+ lr+l++ ++  ++ s+
  CTQ27366.1 454 EKTMQHVQTTLDNLNKITSSQsmQQLPADMQTTLRELNRSMQGFQPGSA 502
                 6678999***********99955666799*********99999888765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
        SlyX  20 eeLndvvaeqqqqidrlqrqlrllaerl 47 
                 ++L++v+ e q  ++ l  + ++l+ + 
  CTQ27366.1 512 QRLDQVLRELQPVLKTLNDKSNALVFEA 539
                 4455555555555555555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      772  (0.0430587); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.64u 0.33s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 3697.62
//
Query:       CTQ27367.1  [L=187]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-39  133.6   5.4    5.3e-39  133.4   5.4    1.0  1  ABC_trans_aux  ABC-type transport auxiliary lipoprotein compo


Domain annotation for each model (and alignments):
>> ABC_trans_aux  ABC-type transport auxiliary lipoprotein component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.4   5.4     3e-43   5.3e-39       1     161 []      26     180 ..      26     180 .. 0.96

  Alignments for each domain:
  == domain 1  score: 133.4 bits;  conditional E-value: 3e-43
                    .....--------TTS--SEEEE---BE-TTTSSSEEEEESSTTEEEEEEEEEESS-HHHHHHHHHHHHHHTTSSBSEEE---..-----SEEEEE CS
  ABC_trans_aux   1 YtLsapapaatpaasspalqvevgpVslpeyLdrpqivvrtgdgelqlaenarWaepLadeltraLaaaLsqrlpsarvaaepwpaaeapdyrvev 96 
                    Y+L+  +  a++aas+ a++++v++Vs+p+yL+ +++v++t+d ++ +a+n++Wa+pL+++l+ +L+a+Lsq+lp++ v+++p    ++++ +++v
     CTQ27367.1  26 YQLPVVQGGAQSAASQGARLLWVEQVSIPDYLAGNGVVYQTTDVQYVIANNNLWASPLDQQLRTTLVANLSQQLPGWVVSSQP---LGSEQDTLNV 118
                    99*999999999999999*****************************************************************...677788**** PP

                    EEEEEEEE-TTSEEEEEEEEEEETTTTEEEEEEEEEEEEE-SSSSHHHHHHHHHHHHHHHHHHH. CS
  ABC_trans_aux  97 dvqrFesdpggqavlearwtlldakgkrvlasrsfriseplagdgyaalVaalsqalaqlaeqia 161
                     v+ F+++++g+++++++w l + +g+  l +r+f i  + ++dgy+a+V++l+qa++q a++ia
     CTQ27367.1 119 AVNGFHGRYDGRVIVSGEWLLKH-QGQ--LIKRPFNIVLRQEQDGYDAMVKTLAQAWSQEAAAIA 180
                    ***********************.555..9*********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1397.11
//
Query:       CTQ27368.1  [L=188]
Description: beta-hydroxydecanoyl thioester dehydrase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-54  181.0   0.0      1e-53  180.7   0.0    1.1  1  FabA      FabA-like domain


Domain annotation for each model (and alignments):
>> FabA  FabA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.7   0.0   5.6e-58     1e-53       1     137 [.      45     174 ..      45     175 .. 0.98

  Alignments for each domain:
  == domain 1  score: 180.7 bits;  conditional E-value: 5.6e-58
                 ---TTT---SEEEEEESTCTCTSS.EEEEEEE--TTSHHHHHSSTTS----HHHHHHHHHHHHHHHHHHCC---SCCEEE-EEEEEEECEEEE-S---T CS
        FabA   1 lparklllldrvleieeeggkfgkGlivaekdvtpnewfFqgHFpgdPvmPGvLgleamaQlvgfyllksggdegkgrarklvlfagvdevkfrgqvtP 99 
                 lpa+++l++drv++++e+gg+++kG+++ae d++p+ wfF +HF gdPvmPG+Lgl+am+Qlvgfyl++ gg egkgra+      gv+evkf+gqv+P
  CTQ27368.1  45 LPAPNMLMMDRVIKMTETGGNYDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGG-EGKGRAL------GVGEVKFTGQVLP 136
                 89********************************************************************99.9999999......************* PP

                 T-.EEEEEEEEEEEEECCTCEEEEEEEEEETTEEEEEE CS
        FabA 100 gdkklvleveikkvseekrviiiadaellvdgklvyea 137
                 ++kk+++++++k+++++++ +++ad+e+lvd++l+y+a
  CTQ27368.1 137 TAKKVTYRIHFKRIVNRRLIMGLADGEVLVDDRLIYTA 174
                 ************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1405.60
//
Query:       CTQ27369.1  [L=585]
Description: putative ATP-dependent protease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-23   81.8   0.0    1.1e-22   80.5   0.0    1.5  2  AAA_32           AAA domain
    2.6e-10   40.2   0.0    4.7e-10   39.4   0.0    1.3  1  Lon_C            Lon protease (S16) C-terminal proteolytic do
  ------ inclusion threshold ------
       0.09   12.5   0.0       0.23   11.1   0.0    1.7  1  Sigma54_activat  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   1.8e-26   1.1e-22     290     505 ..     113     314 ..      98     323 .. 0.89
   2 ?   -2.2   0.0      0.23   1.4e+03     131     185 ..     512     565 ..     500     571 .. 0.61

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 1.8e-26
      AAA_32 290 egaPVvvednptyanLfGkieyesemgalvtdftlIkaGaLhkAnGGyLildaedlLeeplaWeaLkraLrskeikiesleeqlglistvsLkPepipl 388
                 + aPVv+ d  + ++LfG++ + +    ++     +++G +h+AnGG+L+l ++ lL++pl+W  Lk +  +++    s++e    ++    +   +pl
  CTQ27369.1 113 STAPVVMADWVEAEQLFGCVRQFNGA--IT-----LQPGLVHQANGGVLVLSLRTLLAQPLLWVRLKNMVTRQRFDWLSMDE----SRPLPVSIPSMPL 200
                 68******************876544..33.....78*****************************************9999....5666777889*** PP

      AAA_32 389 dvKViLiGsrelYylLseyDpdfkklFkvkadFddemer.teenekkyarfiasivkkekllpfdrsavarlieyssrlaedqeklstrfseiadllrE 486
                 ++K+iL+G+re     +e++p+++    +  +++d+++  ++++ k+ ++++ + +++ +l+   ++a   li++++r ++dqe l ++   i+  lrE
  CTQ27369.1 201 SLKIILVGERESLADFQEMEPELAAQ-AIYSEYEDTLQFaDADTLKAWCQWVWQNAQQLELPGPAADAWPLLIDEGTRYTGDQETLPLSPLWITRQLRE 298
                 ***********************987.8*********97156788999*************************************************** PP

      AAA_32 487 AdywakkegaevveaehVe 505
                 A+++++ e    ++ e ++
  CTQ27369.1 299 AAAFCEGE---EITGEAMQ 314
                 ****9875...45555555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.23
      AAA_32 131 lleelekeaeekgfalkrtpegivlvPlkdgkplseeefealpeeerkeleekse 185
                 l +el++ +++++fa+    + ++ +P+   + + + e ++l +  ++++ ++++
  CTQ27369.1 512 LSHELRQAVADNQFAIWAIDDITEALPML-TQLMWDGEGQTLRQTIQERIAQATQ 565
                 55677777777777777777777777774.3444555555555555555544443 PP

>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   7.8e-14   4.7e-10     108     183 ..     435     520 ..     431     541 .. 0.76

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 7.8e-14
                 GGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHH.....HHHHHT..T-SBEEEEGGGGGGT...TTS-HHH CS
       Lon_C 108 dGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekl.....laakra..gikkvilPkenekdl...ediPeev 183
                 dG sa ++ + al+s+l+++++++ +a+tG +   Grv p+GGl ek+     ++ +r+  g + vi+P +n ++l   +++ ++v
  CTQ27369.1 435 DGDSASMAELCALISALANVPINQSIAITGSVDQFGRVQPVGGLNEKIegfftICQQRGltGKQGVIIPAANVRHLslsHELRQAV 520
                 9**********************************************744443555554225578*********993333444444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.9e-05      0.23      67      99 ..     125     156 ..     100     177 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.9e-05
                      HHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEE CS
  Sigma54_activat  67 eseLFGhekGaFtGAekekkGlfekadgGtlfL 99 
                      + +LFG ++  F GA + + Gl+++a+gG+l L
       CTQ27369.1 125 AEQLFGCVR-QFNGAITLQPGLVHQANGGVLVL 156
                      5689**998.6********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4314.86
//
Query:       CTQ27370.1  [L=150]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-44  149.6   3.0    2.8e-44  149.6   3.0    1.6  2  MatP         MatP N-terminal domain
    4.7e-30  103.6   1.2    4.7e-30  103.6   1.2    1.7  2  MatP_C       MatP C-terminal ribbon-helix-helix domain
    0.00042   20.1   0.1    0.00082   19.2   0.1    1.4  1  RHH_4        Ribbon-helix-helix domain
  ------ inclusion threshold ------
      0.031   14.5   3.1        1.1    9.5   3.1    2.3  1  TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
      0.045   13.8   0.2      0.083   13.0   0.2    1.5  1  ELK          ELK domain


Domain annotation for each model (and alignments):
>> MatP  MatP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.6   3.0   7.9e-48   2.8e-44       1      84 []       2      85 ..       2      85 .. 1.00
   2 ?   -1.5   0.0       1.1   3.8e+03      25      39 ..     117     131 ..     107     145 .. 0.55

  Alignments for each domain:
  == domain 1  score: 149.6 bits;  conditional E-value: 7.9e-48
                -S---HHHHHHHHHHHHHHHHHTT---BS-SSHHHHHHHHHHHHTTTT-HHHHHHHHHHHB-HHHHHHHHHHHHHHHHHHHHTT CS
        MatP  1 kYqqLenleagWkwkYLvkkhregeeitryieksaaeeavqqllklenepekveeWikehmspelenklkqairarrkrffnae 84
                kYqqLenle+gWkwkYLvkkhrege itryie saa++av++ll+lenep+ v++Wi++hm+p+l+n++kq+irarrkr+fnae
  CTQ27370.1  2 KYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQAAVDDLLTLENEPVLVHAWIEQHMNPTLMNRMKQTIRARRKRHFNAE 85
                8**********************************************************************************9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
                 ---BS-SSHHHHHHH CS
        MatP  25 eeitryieksaaeea 39 
                 e+i + ie ++ +e+
  CTQ27370.1 117 ETIVQLIEDAEHKEK 131
                 444444444444333 PP

>> MatP_C  MatP C-terminal ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         2   7.1e+03      26      35 ..      64      73 ..      58      81 .. 0.53
   2 !  103.6   1.2   1.3e-33   4.7e-30       1      60 []      88     147 ..      88     147 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2
      MatP_C 26 sTLSetivqL 35
                 TL + ++q 
  CTQ27370.1 64 PTLMNRMKQT 73
                4444433333 PP

  == domain 2  score: 103.6 bits;  conditional E-value: 1.3e-33
      MatP_C   1 hTrKKSiDLdyavWqrLsklsqrrgsTLSetivqLieeaerkekyeeqvsslkedLkeLL 60 
                 hTrKKSiDL++ vWqrL+ l+qrrg TLSetivqLie+ae+keky++++sslk+dL+ LL
  CTQ27370.1  88 HTRKKSIDLEFVVWQRLAGLAQRRGKTLSETIVQLIEDAEHKEKYASKMSSLKHDLQVLL 147
                 9********************************************************998 PP

>> RHH_4  Ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   2.3e-07   0.00082      12      51 ..      91     130 ..      86     139 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.3e-07
                 EEEEEEEHHHHHHHHHHHHHTT--HHHHHHHH.HHHHSS. CS
       RHH_4  12 rTSirLEpafWdaLeeiArregltvnaLiaeidadrrgea 51 
                 + Si LE  +W+ L  +A+r+g t+++ i ++ +d ++++
  CTQ27370.1  91 KKSIDLEFVVWQRLAGLAQRRGKTLSETIVQLIEDAEHKE 130
                 569**********************988776643332333 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.1    0.0003       1.1      33      76 ..     102     146 ..      56     150 .] 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0003
  TMF_TATA_bd  33 eelerleaer.deareeivklmkeneelkelkkeleelekeleel 76 
                  ++l+ l++ r ++++e iv+l+++ e ++++++++++l+  l+ l
   CTQ27370.1 102 QRLAGLAQRRgKTLSETIVQLIEDAEHKEKYASKMSSLKHDLQVL 146
                  45666777773567888**********************999865 PP

>> ELK  ELK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   2.3e-05     0.083       7      21 ..     129     143 ..     129     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
         ELK   7 LrKYsGyLssLRkEF 21 
                 + KY++++ssL++++
  CTQ27370.1 129 KEKYASKMSSLKHDL 143
                 78***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1118  (0.0623571); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1140.32
//
Query:       CTQ27371.1  [L=374]
Description: outer membrane protein A (3a;II*;G;d) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-74  249.7   3.1    2.1e-74  249.2   3.1    1.2  1  OmpA_membrane  OmpA-like transmembrane domain
    2.1e-23   82.5   0.0    4.7e-23   81.4   0.0    1.6  1  OmpA           OmpA family
    4.6e-19   69.2  14.0    6.6e-19   68.7  14.0    1.2  1  OMP_b-brl      Outer membrane protein beta-barrel domain
  ------ inclusion threshold ------
      0.052   13.5   0.1       0.44   10.5   0.0    2.3  2  DUF2490        Protein of unknown function (DUF2490)


Domain annotation for each model (and alignments):
>> OmpA_membrane  OmpA-like transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.2   3.1   4.7e-78   2.1e-74       1     182 [.      41     222 ..      41     223 .. 0.97

  Alignments for each domain:
  == domain 1  score: 249.2 bits;  conditional E-value: 4.7e-78
                    --TTEEEEEEEEEEESTSSSS........CSS-SSSSSEEEEEEEEEEEEETTEEEEEEEEEEEESSS-SS---S-EEEEEEEEEEEEEEESSSSE CS
  OmpA_membrane   1 pkantfYvGakaGwasfhdtinqekn...ekkknierdsvtagvFgGYqinnqlalElGYdylGrakakgkkkvvkhkaqgvtLslklsyellddl 93 
                    pk+nt+Y+G+k+Gw+++hdt+  + n   ++++++++d+++ag+FgGYq+n++l++E+GYd+lGr+ +kg++ ++++kaqgv+L++kl+y+++ddl
     CTQ27371.1  41 PKDNTWYAGGKLGWSQYHDTGFYG-NgfqNNNGPTRNDQLGAGAFGGYQVNPYLGFEMGYDWLGRMAYKGSVDNGAFKAQGVQLTAKLGYPITDDL 135
                    799******************765.4468999**************************************************************** PP

                    EEEEEEEEEEEEEEEESSSSB.....EEEEEEEEEEEEEEEEEEEETTEEEEEEEEEESSSSSBTSTTS..-S-EEEEEEEEEEEE-SS CS
  OmpA_membrane  94 dvYakvGvalvradykvkedkkskekknhdtkvslllavGveyaitpelalrleYqylnnvgdlrkaakkykpdievvslglsyrfgqg 182
                    d+Y+++G++++rad+k ++ ++++++++hdt+vs+++a Gve+a+t+++a+rleYq++nn+gd+++ ++  +pd++++slg+syrfgq+
     CTQ27371.1 136 DIYTRLGGMVWRADSKGNYASTGVSRSEHDTGVSPVFAGGVEWAVTRDIATRLEYQWVNNIGDAGTVGT--RPDNGMLSLGVSYRFGQE 222
                    *********************************************************************..*****************8 PP

>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0     1e-26   4.7e-23       1      93 [.     250     345 ..     250     347 .. 0.92

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 1e-26
                 .B-TTS--B-GGGHHHHHHHHHHHH..S-S--...EEEEE---S---HHHHHHHHHHHHHHHHHHHHHTTSSGGGEEEEE-TT--------------E CS
        OmpA   1 yFapgsseLtpkaksaldkiaellk..kpeqk...itveGhtdaagseernweLSqkRAeaVanylqnegvppsrisvsgyGaerpitanntaekkar 93 
                 +F++++++L+p+ ++ald++  +l       k    +v G+td+ gse++n++LS+kRA++V +yl+++g+p+ +is+ g+G+++p+t n+ ++ kar
  CTQ27371.1 250 LFNFNKATLKPEGQQALDQLYTQLSnmD--PKdgsAVVLGYTDRIGSEAYNQQLSEKRAQSVVDYLVAKGIPAGKISARGMGESNPVTGNTCDNVKAR 345
                 5********************9999552..33457*******************************************************99988776 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7  14.0   1.5e-22   6.6e-19       2     178 .]      26     219 ..      25     219 .. 0.79

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 1.5e-22
   OMP_b-brl   2 allllaalsaaaaaassfggfyvggglglskvkv.....dgvgsds......gfgfgvgagyefndnvgvegglsysgdkdysgs.gktdikinllsvp 88 
                 ++++la++++ a+aa  +  +y+gg lg+s +       +g+++++        g g+++gy++n+++g+e g++++g   y+gs ++  +k    +++
  CTQ27371.1  26 IAVALAGFATVAQAAPKDNTWYAGGKLGWSQYHDtgfygNGFQNNNgptrndQLGAGAFGGYQVNPYLGFEMGYDWLGRMAYKGSvDNGAFKAQGVQLT 124
                 6899999999999999999***********777634444333444466665468*************************99999876666666665555 PP

   OMP_b-brl  89 vnagyafnlsdsvlpyggaGlg..ytkvevdvsgng......asdsdtdfglglgaGveyaladnwslkaeYry.tdlks..dadndlknntfqvgvgy 176
                 +++gy  ++ d + +y  +G    +++ +++    +       s+ dt  +  ++ Gve a++ +++ ++eY+  +++++  + ++ ++n  +++gv+y
  CTQ27371.1 125 AKLGY--PITDDLDIYTRLGGMvwRADSKGN----YastgvsRSEHDTGVSPVFAGGVEWAVTRDIATRLEYQWvNNIGDagTVGTRPDNGMLSLGVSY 217
                 55555..88899*****99988554444555....444558899999999999********************85788766666666************ PP

   OMP_b-brl 177 rF 178
                 rF
  CTQ27371.1 218 RF 219
                 ** PP

>> DUF2490  Protein of unknown function (DUF2490)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   9.7e-05      0.44      27      60 ..      69     108 ..      53     142 .. 0.77
   2 ?    1.0   0.0     0.077   3.5e+02      40     100 ..     124     192 ..     104     223 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.7e-05
     DUF2490  27 lrddlsefnqillrpglgyklnkklsvslgyay......e 60 
                  ++  ++ +q+ + + +gy++n++l + +gy +      +
  CTQ27371.1  69 NNNGPTRNDQLGAGAFGGYQVNPYLGFEMGYDWlgrmayK 108
                 455666999************************6654431 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.077
     DUF2490  40 rpglgyklnkklsvs...lgyay.....eeekekkknntedriwqqflitlkklg.rftlshRfRlEqRf 100
                  + lgy ++++l +     g+ +     ++  +++ ++ e++      ++ + ++  +t ++++RlE+++
  CTQ27371.1 124 TAKLGYPITDDLDIYtrlGGMVWradskGNYASTGVSRSEHDTGVSPVFA-GGVEwAVTRDIATRLEYQW 192
                 55566666666666555444444554443334444444444444444444.3333445666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2748.75
//
Query:       CTQ27372.1  [L=169]
Description: SOS cell division inhibitor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-57  191.6   4.6    3.7e-57  191.2   4.6    1.1  1  SulA      Cell division inhibitor SulA


Domain annotation for each model (and alignments):
>> SulA  Cell division inhibitor SulA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.2   4.6     2e-61   3.7e-57       2     114 ..       6     119 ..       5     120 .. 0.98

  Alignments for each domain:
  == domain 1  score: 191.2 bits;  conditional E-value: 2e-61
        SulA   2 kaarssslslaakeaaessaeaktkGliselvysedqPvltql.llPllqqlgqqsrWllWltPqqklsreWlqqaglPlekvvqlsqinplstvdame 99 
                 +a+rs+++s+ a+++a++s e++t+Glise+vy+edqP++tql llPllqqlgqqsrW+lWltPqqklsreW+q+aglPl+kv+q+sq++p++t+d+m+
  CTQ27372.1   6 HANRSAQASAPASHYAHRSVEQNTNGLISEIVYREDQPMMTQLlLLPLLQQLGQQSRWQLWLTPQQKLSREWVQSAGLPLSKVMQISQLSPSHTIDSMI 104
                 78999**************************************99****************************************************** PP

        SulA 100 kalrtGnysvvlgWl 114
                 +alrtGnysvv++Wl
  CTQ27372.1 105 RALRTGNYSVVICWL 119
                 **************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1344.00
//
Query:       CTQ27373.1  [L=89]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 757.52
//
Query:       CTQ27374.1  [L=198]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-26   91.9   0.1    2.9e-26   91.4   0.1    1.2  1  TfoX_C    TfoX C-terminal domain
    6.9e-22   77.5   0.0      1e-21   76.9   0.0    1.3  1  TfoX_N    TfoX N-terminal domain


Domain annotation for each model (and alignments):
>> TfoX_C  TfoX C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.1   3.3e-30   2.9e-26       3      80 ..     117     194 ..     115     195 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 3.3e-30
      TfoX_C   3 nrLkdLpNlglklerlLkkaGIktveeLrelGaveaylkiketgtsvslelLyaLegAlqgvhwndlpeeekeeLlek 80 
                  rLkdLpN+++++e +L +aGI +v++Lre+Ga+ea+l+++ +++s+sl++L aLegA+ gvh ++lp ++++eLle+
  CTQ27374.1 117 GRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNNASLSLSVLLALEGAIAGVHAAALPTPRRQELLEW 194
                 69**************************************************************************98 PP

>> TfoX_N  TfoX N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   1.1e-25     1e-21       3      92 ..      16     105 ..      14     106 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 1.1e-25
                 HGGGS-EEEEEETTEEEEEETTEEEEEEETTEEEEE--HHHHHHHHHTT----EEEETTEEEE-SEEE--HHHHC-HHHHHHHHHHHHHH CS
      TfoX_N   3 laplgevtsrrmFGgyglfvdglmfalvsdgelylradeetreefeaaglepftyakkgtpktlsYyrvpeelledpeqlarwvrlalea 92 
                 ++plg++++r +FGgy+l +d+++fa+v++g++yl+a+e+++++ +++  + +t +++g++++l+Yy++++ l++d++ql r+  l+++ 
  CTQ27374.1  16 VSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLKYYQIDDTLWRDEQQLFRLSLLSWQS 105
                 689*********************************************************************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1726.11
//
Query:       CTQ27375.1  [L=711]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.3e-107  357.1   7.4   5.3e-107  357.1   7.4    3.2  3  FUSC-like  FUSC-like inner membrane protein yccS
    1.3e-25   89.9  13.0    1.3e-25   89.9  13.0    2.4  2  FUSC_2     Fusaric acid resistance protein-like
    1.8e-08   33.4  12.3    1.8e-08   33.4  12.3    3.7  3  FUSC       Fusaric acid resistance protein family
     0.0034   16.3   2.7      0.022   13.6   2.8    2.1  1  ALMT       Aluminium activated malate transporter
  ------ inclusion threshold ------
       0.22   11.6   0.0          8    6.5   0.0    3.2  4  DUF1664    Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> FUSC-like  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.1   7.4  1.5e-110  5.3e-107       1     284 []      66     345 ..      66     345 .. 0.98
   2 ?   -1.1   2.4      0.22   7.9e+02      29     123 ..     461     561 ..     438     583 .. 0.59
   3 !    4.1   0.3    0.0056        20     233     280 ..     652     699 ..     647     703 .. 0.86

  Alignments for each domain:
  == domain 1  score: 357.1 bits;  conditional E-value: 1.5e-110
   FUSC-like   1 nLavtllcfalaslivqlllpypwlfvlglllstflftmlgalGqryatiafatLlvaiytmlgasqepeiwqqplllllGalwYgllsllwsllfpnr 99 
                 nLa+tl+cf++as +v+ll+p+p lf+lgl++st++f++lg lGqryatiaf++Ll+aiytmlg++ + +++ qpl ll+Ga+wY+ll+l  +l+fp r
  CTQ27375.1  66 NLAITLVCFFIASASVELLFPWPPLFALGLTVSTIGFILLGGLGQRYATIAFGALLIAIYTMLGVTLYDHWYLQPLFLLAGAVWYNLLTLSGHLIFPIR 164
                 79****************************************************************999****************************** PP

   FUSC-like 100 pvqqsLaelfealAdYleaKaslfepdreddleakrlaLaqqnakvvealnaareillsrlkskrgqpetksrrllrlyfvaqDihErassshydYeel 198
                 p+q++La+++e+lA+Yle+K++lf+pd ed+ +a  ++La +n ++v++ln+++ +ll+rl+++rgq++t+  r+l++yfvaqDihErasssh++Y+ l
  CTQ27375.1 165 PLQDNLARSYEQLARYLELKSRLFDPDLEDESQAPLYDLALANGQLVATLNQTKVSLLTRLRGDRGQRGTR--RTLQYYFVAQDIHERASSSHIQYQTL 261
                 ***********************************************************************..************************** PP

   FUSC-like 199 reafknsdvlfrfqrllelqakaceeiaqaillnkpyqhserleraleeleqslellakqnnekekellaalrallrnLrtierql 284
                 r++f+ sdv+frfqr+l++qa+ac+++++aill++pyqh++++era+ +l+++le +++    ++ e l+al +ll+nLr+i++ql
  CTQ27375.1 262 RDQFRYSDVMFRFQRMLSMQAQACQKLSRAILLREPYQHDAHFERAFMHLDAALERVRAG--GASDEQLNALGYLLNNLRAIDAQL 345
                 ********************************************************8888..677789***************997 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.22
   FUSC-like  29 glllstflftmlgal..GqryatiafatLlvaiytmlgasq....epeiwqqplllllGalwYgllsllwsllfpnrpvqqsLaelfealAdYleaKas 121
                  + ++ +l++++g+l    r  + a at+++ ++ +l  +       +++ + + +l+G ++  +   +++  ++ r +   L +++ a  +Yl+a  +
  CTQ27375.1 461 SVEGQLLLIVLTGVLffAFRNVQYAHATMFITLLVLLCFNLlgegFEVALPRIIDTLIGCAIAWAAVSFIWPDWKFRNLPRVLDRAMNANCRYLDAILE 559
                 444555555555554224444455555555544443333322222446777777788887776666666667778888888888888888888888666 PP

   FUSC-like 122 lf 123
                  +
  CTQ27375.1 560 QY 561
                 55 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.0056
   FUSC-like 233 kpyqhserleraleeleqslellakqnnekekellaalrallrnLrti 280
                 ++  +++r+++al++l++ +++l+ ++  ke+  l+++  ll+ L +i
  CTQ27375.1 652 HTPADEQRVQQALNSLQSRIHHLEPRADSKEPLVLQQIGLLLALLPEI 699
                 44557899******************99999*******9999998776 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   7.9       0.5   1.8e+03      36      97 ..      63     127 ..      22     152 .. 0.63
   2 !   89.9  13.0   3.7e-29   1.3e-25       4     126 ..     406     525 ..     401     526 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.5
      FUSC_2  36 avqRilGtvlGavlallll.yllpgn..lalallvfllvfliafflkrnyalafifltllallly 97 
                  +  ++ t++  ++a +++  l+p +  +al l+v +++f+    l+++ya +++   l+a++++
  CTQ27375.1  63 RLRNLAITLVCFFIASASVeLLFPWPplFALGLTVSTIGFILLGGLGQRYATIAFGALLIAIYTM 127
                 45555556677777777665666765567777788888888777777888544444333333332 PP

  == domain 2  score: 89.9 bits;  conditional E-value: 3.7e-29
      FUSC_2   4 liaellglwrgeWalitaaivlsptlgasltravqRilGtvlGavlallllyllpgn.lalallvfllvfliafflkrnyalafifltllalllyslaa 101
                 ++ ++ gl++g+W+l+t ++v++p++ a+ +r+  Ri+Gt++G++++l +l l+p+   +l+l+v++ v+++ +f++ +ya a++f+tll+ll+++l  
  CTQ27375.1 406 AFIQFTGLQHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPVLLLVPSVeGQLLLIVLTGVLFF-AFRNVQYAHATMFITLLVLLCFNL-- 501
                 788999**************************************************7477776666666665.999*********************.. PP

      FUSC_2 102 gsgnpieialhRlldvliGiliall 126
                   g ++e+al R++d+liG++ia++
  CTQ27375.1 502 -LGEGFEVALPRIIDTLIGCAIAWA 525
                 .7999******************97 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   9.6      0.94   3.4e+03     377     464 ..      44     132 ..       5     148 .. 0.84
   2 !    4.1   1.6    0.0039        14     590     645 ..     282     336 ..     264     352 .. 0.72
   3 !   33.4  12.3   5.1e-12   1.8e-08      22     319 ..     411     701 ..     389     711 .] 0.72

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.94
        FUSC 377 llaaivcslfatldnPapallqfligtllavlaallllfvvlPhvdgfpl.Lvlvlapplllgglllarprlagiglglavffalllap 464
                 l+ ++v + +  ld+  +  l+ l  tl++  +a + + +++P+   f+l L ++   ++llggl +    +a ++l +a+ ++l + +
  CTQ27375.1  44 LTLGVVAAALTDLDDRLAGRLRNLAITLVCFFIASASVELLFPWPPLFALgLTVSTIGFILLGGLGQRYATIAFGALLIAIYTMLGVTL 132
                 555666666777888888888899999********************776599999**************************9998766 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0039
        FUSC 590 davlaalafrapaaarsarrlrapaaalraldaalaalaaseatsalrralaaLvr 645
                  ++++ l+ ra   +++ + ++ +++a  +ldaal++++a +a+++  +al++L +
  CTQ27375.1 282 AQACQKLS-RAILLREPYQHDAHFERAFMHLDAALERVRAGGASDEQLNALGYLLN 336
                 34444444.55557778888899*********************996666665543 PP

  == domain 3  score: 33.4 bits;  conditional E-value: 5.1e-12
        FUSC  22 leLpqPywAmtTVfiVsqPlsGavlsKslyRllGTllGaaaavllvalfvqapllfllalalWiglclalslldrnfrsYafvLAGYTaalialpavad 120
                  +L++ yw ++T ++V+qP+  a++++ + R++GTl+G+a ++ ++ l+v + +  ll++ l +g++ ++   ++++ +  f      ++l +l+ ++ 
  CTQ27375.1 411 TGLQHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPVL-LLVPSVEGQLLLIVL-TGVLFFAFRNVQYAHATMF------ITLLVLLCFNL 501
                 58***************************************98766.555555555555543.5666565565666666666......6999******* PP

        FUSC 121 PetvFdiAvaRvseIvlGIvCaalVsalvfP....rsvapalrarlrallrdalalaaaalageegaeareaararlaadilalealrsqaayesprir 215
                   + F++A+ R+ + ++G   a +  + ++P    r + + l++++ a +r + a +++  +g++ + a + ar++   + ++l + +s +++e +  +
  CTQ27375.1 502 LGEGFEVALPRIIDTLIGCAIAWAAVSFIWPdwkfRNLPRVLDRAMNANCRYLDAILEQYHQGRDNRLAYRVARRDAYNRDAELASVVSNLSTEPRADA 600
                 *******************************55555555555555555555555555555566666666688888888888888888888888888877 PP

        FUSC 216 araralrrllsrmlallallsslarllarlraeeaaavpelaallaelaal......eaaaaaealeaalaalrarlralrraleadadtaalllarla 308
                  + + + rll    ++++ +s+l  + + l++ e  a       l+++            a++++ ++al++l+ r+  l+++++   + + l+l++  
  CTQ27375.1 601 TQRETAFRLLCLNHTFTSYISALGAHREKLSTPEILAL------LDDAVCYvddalhHTPADEQRVQQALNSLQSRIHHLEPRAD---SKEPLVLQQIG 690
                 77777777777777777777777777777776555443......33333333333444445788999999999999999999888...77777777766 PP

        FUSC 309 ellaelaqlla 319
                  lla l ++ +
  CTQ27375.1 691 LLLALLPEICR 701
                 66655544444 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   2.8     6e-06     0.022      11     207 ..     389     568 ..     383     595 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6e-06
        ALMT  11 vvfslkvGlaltLvsllyflrplykelgknavWailTVvvvlefsvGATlskGlnRalaTliAGglalgvselasssgkileeivigvsvFiiaalatf 109
                   f  +v ++l L++ + f++    +l +++ W  lT   v + +  AT  +   R ++Tl++ +++l v  l  s+  +l  iv++ + F++ +    
  CTQ27375.1 389 ALFRHAVRMSLVLCAGYAFIQFT--GL-QHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPVLLLVPSVEGQLLLIVLTGVLFFA-F---- 479
                 56778888999999999998866..54.7899**************************************99987777756655555555542.2.... PP

        ALMT 110 lrliPaikarYdYgvlvflLTFclvvvsgyrtdevielAvkRfltiaiGaliclivsifvfPiwaGedLhklvaknleklakslegcvdeyleekeke 207
                        + + +Y+ + + +T  lv++  +  +e +e+A  R++  +iG++i+     f++P w   +L + + + ++   ++l+++ ++y +   + 
  CTQ27375.1 480 -------R-NVQYAHATMFIT-LLVLLCFNLLGEGFEVALPRIIDTLIGCAIAWAAVSFIWPDWKFRNLPRVLDRAMNANCRYLDAILEQYHQGRDNR 568
                 .......1.245666666666.4788888999***********************************************************9966555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.34   1.2e+03      28      79 ..     267     319 ..     258     354 .. 0.54
   2 ?   -4.2   0.0       4.7   1.7e+04      15      27 ..     402     414 ..     398     416 .. 0.82
   3 ?   -0.3   0.0      0.28     1e+03      10      54 ..     521     562 ..     514     578 .. 0.78
   4 ?    6.5   0.0    0.0022         8      66     121 ..     618     675 ..     609     678 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.34
     DUF1664  28 lsdlmfvTkrsls...davesvskqleqvseslaatkrhLssridrvdkkldeqk 79 
                  sd+mf  +r ls   +a++++s+ +  +  +  +   h+++   ++d+ l+ + 
  CTQ27375.1 267 YSDVMFRFQRMLSmqaQACQKLSRAI--LLREPYQHDAHFERAFMHLDAALERVR 319
                 68888888887753336777777665..233334444555555555555555544 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 4.7
     DUF1664  15 avgYgyvwwkGwk 27 
                  +gY+++++ G++
  CTQ27375.1 402 CAGYAFIQFTGLQ 414
                 579******9985 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.28
     DUF1664  10 aavvgavgYgyvwwkGwklsdlmfvTkrslsdavesvskqleqvs 54 
                 a++ +av++    w  wk+ +l  v  r ++  +  +   leq  
  CTQ27375.1 521 AIAWAAVSF---IWPDWKFRNLPRVLDRAMNANCRYLDAILEQYH 562
                 455555544...478899999999999999999999999888865 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0022
     DUF1664  66 sridrvdkkldeqk..eiskeikeevtevredlseigedvesvkeaveglesklerie 121
                 s i  ++++ ++ +  ei + +++ v  v + l+++  d + v++a ++l+s+++++e
  CTQ27375.1 618 SYISALGAHREKLStpEILALLDDAVCYVDDALHHTPADEQRVQQALNSLQSRIHHLE 675
                 55555555555433228899999*********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.23s 00:00:00.89 Elapsed: 00:00:00.38
# Mc/sec: 5621.70
//
Query:       CTQ27376.1  [L=148]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-28   98.5  29.0      3e-18   66.2  14.7    2.1  2  YccF      Inner membrane component domain
  ------ inclusion threshold ------
      0.055   13.6   0.6        0.1   12.7   0.6    1.4  1  DHHC      DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> YccF  Inner membrane component domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   6.3   1.4e-13   1.3e-09       1      50 [.       4      53 ..       4      54 .. 0.98
   2 !   66.2  14.7   3.4e-22     3e-18       1      51 []      77     127 ..      77     127 .. 0.98

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 1.4e-13
        YccF  1 lgNilWlllfGwwlaliyllaglllfitiigipygrvlfklakyllwPFG 50
                ++Nil ++l+G+ + l++lla l+  i+i+++p  r ++++ +++l+P G
  CTQ27376.1  4 ILNILNFILGGFATTLGWLLATLVSIILIVTLPLTRSCWEITRLSLFPYG 53
                69**********************************************99 PP

  == domain 2  score: 66.2 bits;  conditional E-value: 3.4e-22
        YccF   1 lgNilWlllfGwwlaliyllaglllfitiigipygrvlfklakyllwPFGk 51 
                 ++NilW+++fGwwl+l+++++g++ ++tiigip+g++ fk+a ++lwP G+
  CTQ27376.1  77 VLNILWFIFFGWWLCLMHIFSGIAQCLTIIGIPVGIANFKIAAIALWPVGR 127
                 68***********************************************96 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6   1.2e-05       0.1      47     117 ..       6      97 ..       4     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
        DHHC  47 NykyFllfllylllllilalvlllialvklveeekkseflavtllkk........................llsilllvlsllfllllgllllfh 117
                 N  +F+l  ++++l  +la+++++i +v+l  +++ +e+++++l+                          +l+il+++   +f+ +l+l+ +f+
  CTQ27376.1   6 NILNFILGGFATTLGWLLATLVSIILIVTLPLTRSCWEITRLSLFPYgneaihvdelepgrkngllnaggtVLNILWFI---FFGWWLCLMHIFS 97 
                 7789**************************************9998899***************988844444444444...4444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1282.33
//
Query:       CTQ27377.1  [L=684]
Description: DNA helicase IV [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-62  209.8   1.1    2.2e-62  209.8   1.1    2.0  2  Helicase_IV_N    DNA helicase IV / RNA helicase N terminal
    1.7e-41  142.8   0.0    4.9e-41  141.3   0.0    1.8  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
    7.9e-31  107.4   0.0    1.7e-30  106.3   0.0    1.6  1  AAA_19           AAA domain
    3.2e-13   49.8   0.0    9.9e-13   48.2   0.0    1.8  2  UvrD_C           UvrD-like helicase C-terminal domain
    6.7e-12   45.1   0.1      4e-06   26.6   0.1    2.7  2  UvrD_C_2         UvrD-like helicase C-terminal domain
    3.7e-08   33.3   1.0    2.2e-05   24.3   0.7    2.5  2  AAA_30           AAA domain
     0.0098   16.2   0.1        4.3    7.6   0.1    2.8  2  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.054   13.1   0.0    2.1  2  AAA_12           AAA domain
      0.019   14.7   0.1        3.5    7.3   0.1    3.3  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.11   12.6   1.6       0.23   11.6   1.6    1.5  1  MRP-L28          Mitochondrial ribosomal protein L28
       0.21   12.0   6.2         11    6.4   6.2    3.0  1  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> Helicase_IV_N  DNA helicase IV / RNA helicase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.8   1.1   1.3e-65   2.2e-62       1     161 [.       1     163 [.       1     164 [. 1.00
   2 ?   -2.2   0.6       2.1   3.4e+03      82      91 ..     305     325 ..     272     366 .. 0.55

  Alignments for each domain:
  == domain 1  score: 209.8 bits;  conditional E-value: 1.3e-65
  Helicase_IV_N   1 MelkatklgkllaqhpynrveLdeeglevsgkkseelipfnelssiaikrGlvWgeLefelkeqkvvrlhGlpweetqqfaqtllssyqqWskeqv 96 
                    Melkat+lgk++aqhpy+rv+L+++g++vsg+++e+lipfn+l+s+++krGlvWgeLef+l+++kvvrlhG++w+etq+f+++l + +qqWs+e++
     CTQ27377.1   1 MELKATTLGKRMAQHPYDRVQLLNAGVKVSGDRHEYLIPFNQLLSVHCKRGLVWGELEFVLPDGKVVRLHGTEWSETQRFYHHLHTLWQQWSTEMS 96 
                    9*********************************************************************************************** PP

  Helicase_IV_N  97 qaladvlqkkeeeieefvqqqkylstsevanlvekisaqlkalplplerleqfep..ealkdlkdWl 161
                    +++a vl+++ ++ie+++++ k+l++++va+++++i+++l+ lp+p++rl++f++  e ++++++Wl
     CTQ27377.1  97 DIAAGVLKQQLATIEHTRAEGKWLTRQQVADVQDNIRHALTGLPMPTSRLDAFDNcrELWRECQRWL 163
                    ******************************************************************8 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.1
  Helicase_IV_N  82 qtllssyqq...........W 91 
                      ll+s+q+           W
     CTQ27377.1 305 ALLLKSWQKqcqekkaqakgW 325
                    334444444333333333330 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.7     6e+03     179     217 ..      92     136 ..      73     187 .. 0.47
   2 !  141.3   0.0     3e-44   4.9e-41       1     313 [.     197     489 ..     197     491 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.7
                    HCHHHHHHHHHHHTTCCTTHHCHSS......TSCSHHHHHHHHHH CS
  UvrD-helicase 179 aeelrelvskakekqlspkelkkaf......ekasdlqkkiaefl 217
                     +e++ +   + ++ql + e ++a       ++  d q+ i+++l
     CTQ27377.1  92 STEMSDIAAGVLKQQLATIEHTRAEgkwltrQQVADVQDNIRHAL 136
                    333333333333333333333333333332233333333333333 PP

  == domain 2  score: 141.3 bits;  conditional E-value: 3e-44
                    SSHHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT-HHHHHHHHHCTTSEEEE CS
  UvrD-helicase   1 lnpeqreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdderlrlalqnlseanisT 96 
                    ln++q +a+++ + ++lv+A+AGsGKT vl++r   l++ +e  +d+il++ F ++Aa+E+ eRi+e+l +                  ++++  T
     CTQ27377.1 197 LNASQARAVVNGERSLLVLAGAGSGKTSVLVARAGWLLARGEAAADQILLLAFGRQAAQEMDERIRERLAS------------------DDITART 274
                    6899****************************************************************997..................589**** PP

                    HHHHHHHHHHHHHGGTTSHTTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCH........HHHCCCHHHHHCHHHH CS
  UvrD-helicase  97 lHsfcqkilkkeanrigldpnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnik........keelslskskaeelre 184
                    +Hs+++ i+++  +++   ++++  +      +  ++  ++ +          ++kk++++   l +++++          ++++ ++++a  l  
     CTQ27377.1 275 FHSLALHIIQQGSKKVPTISKLESDTAAR--HALLLKSWQKQC----------QEKKAQAKGWRLWLEEEMGwqlpegdfWQDKKVQRRMASRLDR 358
                    **************998777776655555..222222222222..........2222222222222222322334455558889999999999999 PP

                    HHHHHHHTTCCTTHHCHSS.....TSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHH CS
  UvrD-helicase 185 lvskakekqlspkelkkaf.....ekasdlqkkiaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyri 275
                    +vs +     s+ e  +          s++ k +  ++k+ +  +k+ena+Dfs l+h+++++l++      ++ + +k+il+DE+QD +++ +++
     CTQ27377.1 359 WVSLMRMHGGSQAEMIAGApeavrDLFSKRVKLMSPLMKDWKAALKAENAVDFSGLIHQAVNILDK-----GRFVSPWKHILVDEFQDISPQRASL 449
                    99988766665555544444766666677888889999999************************9.....58999******************** PP

                    HHHHHTTTTT..EEEEE-GGG--GGGGTB-THHHHHHHHH CS
  UvrD-helicase 276 lkllasghee..lfmvGDpkQsIYgFRgAdielflkkkkd 313
                    l  l +++++  lf vGD+ Q+IY+F gA+++l   +++ 
     CTQ27377.1 450 LAALRRQNSQttLFAVGDDWQAIYRFSGAQLSLTTAFNHY 489
                    *******99999*******************999888765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3   0.0     1e-33   1.7e-30       1     145 [.     201     475 ..     201     476 .. 0.95

  Alignments for each domain:
  == domain 1  score: 106.3 bits;  conditional E-value: 1e-33
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae....atTiHrlal.................. 77 
                 q +av    e+ llv+aG+G+GKT vl+++  +l+++g+ ++++ill+af ++Aa+e+ er+++ +a+    a+T+H+lal                  
  CTQ27377.1 201 QARAV-VNGERSLLVLAGAGSGKTSVLVARAGWLLARGEAAADQILLLAFGRQAAQEMDERIRERLASdditARTFHSLALhiiqqgskkvptiskles 298
                 66788.788999************************************************997766668999*************************** PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  CTQ27377.1 299 dtaarhalllkswqkqcqekkaqakgwrlwleeemgwqlpegdfwqdkkvqrrmasrldrwvslmrmhggsqaemiagapeavrdlfskrvklmsplmk 397
                 *************************************************************************************************** PP

      AAA_19  78 ...........ldfddlltealelleeaeeekklqeee.llivDEfqdvdelqyrLlkallgek..kklllvGDpdQliyvf 145
                            +df +l+++a+++l++    +++ + + +++vDEfqd++++  +Ll al  ++  ++l++vGD+ Q+iy f
  CTQ27377.1 398 dwkaalkaenaVDFSGLIHQAVNILDK---GRFV-SPWkHILVDEFQDISPQRASLLAALRRQNsqTTLFAVGDDWQAIYRF 475
                 ******************999999774...6677.7888*********************98875445************99 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.3   2.1e+03     190     190 ..     276     276 ..     140     375 .. 0.55
   2 !   48.2   0.0   6.1e-16   9.9e-13     261     347 ..     560     662 ..     496     664 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.3
                 x RF
      UvrD_C 190 e 190
                 +
  CTQ27377.1 276 H 276
                 1 PP

  == domain 2  score: 48.2 bits;  conditional E-value: 6.1e-16
                 xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 261 eeklneileiatLseseleeskkk...ekipiiTiHqAKGlEFdvVflagleegt..fPsyrskk...........ekrleEEkRlfYVaiTRAkkrLf 343
                 e+++  + ++  L+ + l++  +     +   +TiH++KG   d+V+++gl+eg+  fP    ++               +EE+Rl+YVa+TRA+ r++
  CTQ27377.1 560 EQRILLLARYHHLKPDALNKAATRwphLQLDFMTIHASKGQQADFVIVLGLQEGEdaFPAPARESimeqallpqpeDFPDAEERRLLYVALTRARHRVW 658
                 44566666677777777777777775567778********************975559*6555556677799999744579****************99 PP

                 xxxx RF
      UvrD_C 344 isys 347
                 + ++
  CTQ27377.1 659 LLFN 662
                 8765 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.4e-06      0.01       4      21 ..     591     608 ..     589     618 .. 0.88
   2 !   26.6   0.1   2.5e-09     4e-06      31      51 ..     639     659 ..     629     660 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.4e-06
    UvrD_C_2   4 altihkaQGsefpaVivf 21 
                 ++tih ++G+++++Viv 
  CTQ27377.1 591 FMTIHASKGQQADFVIVL 608
                 69**************96 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 2.5e-09
    UvrD_C_2  31 gelrrrlLYtavTRAreklil 51 
                 +++ rrlLY+a+TRAr++++l
  CTQ27377.1 639 DAEERRLLYVALTRARHRVWL 659
                 3457****************8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.7   1.3e-08   2.2e-05       2      77 ..     197     279 ..     196     334 .. 0.79
   2 !    6.9   0.0    0.0029       4.7      42     128 ..     381     471 ..     345     526 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.3e-08
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaag....grviglAptgkaAkvLaeelg.......ieastiakll 77 
                 lna+Qa+av   ++++ r  ++ ++AG+GKt +l a +  + a+g     ++++lA   +aA+++ e +        i+a+t ++l 
  CTQ27377.1 197 LNASQARAV---VNGE-RSLLVLAGAGSGKTSVLVARAGWLLARGeaaaDQILLLAFGRQAAQEMDERIRerlasddITARTFHSLA 279
                 788888887...4444.57889999*********9988888877888889****************855444334448999999875 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0029
      AAA_30  42 weaa.ggrviglAptgkaAkv.Laeelgi.eastiakllkrlkgrarlepgtllivDEagmvdtkqlaallkaaek.agakvilvGDerQl 128
                 +++   +rv +++p  k  k+ L++e  +  +  i++ ++ l++   ++p + ++vDE   ++ + +  l++  ++ +++++  vGD+ Q 
  CTQ27377.1 381 VRDLfSKRVKLMSPLMKDWKAaLKAENAVdFSGLIHQAVNILDKGRFVSPWKHILVDEFQDISPQRASLLAALRRQnSQTTLFAVGDDWQA 471
                 55554455555555433333223333333134456666666664455666699*********988777666666663469999*****995 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0026       4.3       4      88 ..     208     317 ..     204     325 .. 0.76
   2 ?    5.4   0.0     0.013        21      60     117 ..     395     457 ..     350     469 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0026
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee..............erpevvfvtlpsst.sskdllrellralglelka.........erlsseel 78 
                 ++++l+v + +G+GKT +l   + +l ++ +a+               e +e ++  l+s+  + +++ +  l++++++ k+          ++ +++l
  CTQ27377.1 208 GERSLLVLAGAGSGKTSVLVARAGWLLARGEAAAdqilllafgrqaaqEMDERIRERLASDDiTARTFHSLALHIIQQGSKKvptisklesDTAARHAL 306
                 6788999999***************99988887788888888888888777778888888888888888888888887777777777666644444444 PP

      AAA_22  79 l.ealeqalra 88 
                 l +  ++++++
  CTQ27377.1 307 LlKSWQKQCQE 317
                 44666666655 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.013
      AAA_22  60 llralglelkaerlsseellealeqalrarav......ielliiDEaqhlrs...eealeeLrslln 117
                 l ++++  lka   +  ++  +++qa++  ++       + +++DE+q + s   + +l  Lr ++n
  CTQ27377.1 395 LMKDWKAALKA--ENAVDFSGLIHQAVNILDKgrfvspWKHILVDEFQDI-SpqrASLLAALR-RQN 457
                 44444444445..5666666777777777777777999999*********.523355555553.333 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.8     3e+03      16      35 ..     494     513 ..     483     520 .. 0.79
   2 ?   13.1   0.0   3.3e-05     0.054     126     197 ..     576     662 ..     544     664 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.8
      AAA_12  16 kvvlLdtqYRmhpeIsrfps 35 
                     Ldt YR + +I ++++
  CTQ27377.1 494 DCCALDTTYRFNGRIGEIAN 513
                 5678*********9999887 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.3e-05
      AAA_12 126 llkkklkekeeeksekeievntvdgfQGrekdviilslVRsnekk...................eigflkderrlNValTRAkskliivGn 197
                      l++++++ ++ +++  t+ +  G++ d++i+   +  e+                    ++   +++r l ValTRA+++++++ n
  CTQ27377.1 576 A----LNKAATRWPHLQLDFMTIHASKGQQADFVIVLGLQEGEDAfpaparesimeqallpqpeDFPDAEERRLLYVALTRARHRVWLLFN 662
                 3....333333444445999*************99999999755556666667777777777667777899999*************9866 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.039        63       2      19 ..     213     230 ..     212     290 .. 0.79
   2 ?    7.3   0.1    0.0021       3.5     184     230 ..     590     657 ..     423     661 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.039
  Viral_helicase1   2 vvhGvpGcGKStlirkll 19 
                      +v + +G+GK+++++  +
       CTQ27377.1 213 LVLAGAGSGKTSVLVARA 230
                      78899*******998765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0021
  Viral_helicase1 184 evttvhevqGltfdkVtlvllketdlelis.....................esrenllvAlTRhrksl 230
                      +++t h   G+++d V+++ l+e ++   +                     e+r  l+vAlTR+r ++
       CTQ27377.1 590 DFMTIHASKGQQADFVIVLGLQEGEDAFPAparesimeqallpqpedfpdaEERRLLYVALTRARHRV 657
                      5666666666666666666665544443336666666666666666666667799*********9876 PP

>> MRP-L28  Mitochondrial ribosomal protein L28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.6   0.00014      0.23      50      94 ..     278     322 ..     251     331 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00014
                 XXTTSSTTX..XSXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHH CS
     MRP-L28  50 vplksvdsakrrqrkllelskeelerrallekqwaryrqqekekd 94 
                 + l+++++ +++ ++  +l ++   r+all+k+w+++ q++k + 
  CTQ27377.1 278 LALHIIQQGSKKVPTISKLESDTAARHALLLKSWQKQCQEKKAQA 322
                 5677889999************************99888887665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.2    0.0066        11      17     162 ..     203     457 ..     193     465 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0066
      AAA_16  17 ervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde..............aesaeleawrekl 101
                 ++v  g+ +++l+   +G+GK+s++  ++    ++g++++rg++         ++l+ a+  ++  ++++++                           
  CTQ27377.1 203 RAVVNGE-RSLLVLAGAGSGKTSVL--VA----RAGWLLARGEAAAD------QILLLAF-GRQAAQEMDERirerlasdditartF------------ 275
                 4555565.99***************..44....34566677776666......3355555.32444444444222222222222220............ PP

      AAA_16 102 eeala.............................................................................................. 106
                                                                                                                    
  CTQ27377.1 276 ----Hslalhiiqqgskkvptisklesdtaarhalllkswqkqcqekkaqakgwrlwleeemgwqlpegdfwqdkkvqrrmasrldrwvslmrmhggsq 370
                 ....12233344444444444444444444444444455555555555566666666666666777777777777777777777777777777766644 PP

      AAA_16 107 ............................avpelagaeasrllellkrllallsrder...p.lvlvlDdlqwadeaslqllaaLlrll 162
                                               ++l+++ a ++  l+ ++++ l + +r   p   +++D++q++ ++ ++llaaL r  
  CTQ27377.1 371 aemiagapeavrdlfskrvklmsplmkdWKAALKAENAVDFSGLIHQAVNILDK-GRfvsPwKHILVDEFQDISPQRASLLAALRRQN 457
                 444444444444444443333333333322233333333444444444433333.334444455777777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 4484.84
//
Query:       CTQ27378.1  [L=157]
Description: methylglyoxal synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-18   67.0   0.0    1.7e-18   66.6   0.0    1.2  1  MGS       MGS-like domain


Domain annotation for each model (and alignments):
>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   9.6e-23   1.7e-18       2      95 .]      31     123 ..      30     123 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 9.6e-23
                 HHHHHHHHHHTT..CEEEEEHHHHHHHH.HTT--EEECCCCHSTGSGGTHCHHHHHHHHTTSCCEEEEE--THHHHHH.CHHHHHHHHHHHTTSHEES CS
         MGS   2 lvelakklkelg..fellATgGTakllk.eagipvtevvektgegerlggrveildaikngeidlvintlypfkatva.kdgykirraaenidIplpt 95 
                 l++++ ++++l+  + l+ATg+T++l++ ++g++    v+ + +g ++gg+++++++i++g+id++i++++p++a ++ +d++++ r+a++++Ip++t
  CTQ27378.1  31 LMKWVARHQALLaqHILYATGTTGNLVSrATGLE----VNAMLSG-PMGGDQQVGALISEGKIDVLIFFWDPLNAVPHdPDVKALLRLATVWNIPVAT 123
                 6789999999988899************899***....*******.*************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1211.05
//
Query:       CTQ27379.1  [L=137]
Description: putative CoA-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-39  135.4   0.1    1.3e-39  135.2   0.1    1.0  1  CoA_binding_2  CoA binding domain
    3.5e-05   24.4   0.0    4.8e-05   24.0   0.0    1.2  1  CoA_binding    CoA binding domain


Domain annotation for each model (and alignments):
>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   0.1   1.5e-43   1.3e-39       1     115 [.      14     130 ..      14     131 .. 0.98

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 1.5e-43
                    --EEEET--S-TTSHHHHHHHHHHHHT--EEEESSS-..SEETTEES----T....T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT---HHH CS
  CoA_binding_2   1 rtiaVvGasdnpgkfgykvlryllehglpvvpVnpke..eeilgekvyaslaedpepvdlvdvftppeatpeivkealalgakavwlqpgsedeea 94 
                    rtia+vGasd+p++++y+v++yll++g++v+pV pk   +++lg++ ya+la+ pe+vd+vdvf+++ea+  +++ea+a+gak++wlq+g+ +e+a
     CTQ27379.1  14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVagKTLLGQQGYATLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWLQLGVINEQA 109
                    79**********************************999*************758***************************************** PP

                    HHHHHHTT-EEE.ES-HHHHH CS
  CoA_binding_2  95 aelaeeagirvvgdrCilveg 115
                    a la+eag+ vv+drC+ +e+
     CTQ27379.1 110 AVLAREAGLSVVMDRCPAIEL 130
                    ******************996 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   5.3e-09   4.8e-05       3      91 ..      13      99 ..      11     102 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 5.3e-09
                 TEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEETTEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEEE CS
  CoA_binding  3 dtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevlglpvyksvdeleektevdvavitvPaesaqeavdelveagikgiv 91
                 +  ++++Ga+ +     y++ + l  +  +v++v+p+ +g++ lg + y ++++++ek  vd+  ++  +e+a  +++e+++ g k+ +
   CTQ27379.1 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEK--VDMVDVFRNSEAAWGVAQEAIAIGAKTLW 99
                 6789*************999999999999*****************************..99999999999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1077.30
//
Query:       CTQ27382.1  [L=814]
Description: Uro-adherence factor A (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1278  (0.0712812); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                       185  (0.0103185); expected 17.9 (0.001)
Passed Fwd filter:                        53  (0.0029561); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.51u 0.43s 00:00:02.94 Elapsed: 00:00:00.77
# Mc/sec: 3194.98
//
Query:       CTQ27383.1  [L=427]
Description: Serine-aspartate repeat-containing protein D (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0012   19.5  11.4     0.0012   19.5  11.4    7.6  3  Cadherin_4   Bacterial cadherin-like domain
  ------ inclusion threshold ------
        2.4    6.9  10.8        4.1    6.1  10.8    1.3  1  Presenilin   Presenilin
        4.7    6.1   6.6        6.5    5.7   6.6    1.1  1  SLC12        Solute carrier family 12


Domain annotation for each model (and alignments):
>> Cadherin_4  Bacterial cadherin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   3.0      0.89   5.3e+03      24      37 ..      36      49 ..      15     117 .. 0.55
   2 !   19.5  11.4   1.9e-07    0.0012      20      72 .]     147     221 ..     131     221 .. 0.74
   3 ?  -52.2  58.5         3   1.8e+04      40      40 ..     288     288 ..     228     382 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.89
  Cadherin_4 24 tedtpltitagnvl 37
                ted ++ +t  ++l
  CTQ27383.1 36 TEDVTIAVTGSTLL 49
                33444443333333 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.9e-07
  Cadherin_4  20 satvtedtpltita..gnvlandtDvd....gddltvtavt................vagtyGtltlnadGsftY 72 
                  at+t+ t+ t ta  gnvl  d   d    gd +tv+ ++                ++g yG+lt++adGs+tY
  CTQ27383.1 147 QATITDSTQYTSTAiaGNVLVADAGGDvadtGDGITVSKIAssvqttpldvtaagvvINGLYGQLTIHADGSYTY 221
                 3456666666665566****9988766544444488888877777777777777777899*************** PP

  == domain 3  score: -52.2 bits;  conditional E-value: 3
  Cadherin_4  40 d 40 
                 d
  CTQ27383.1 288 D 288
                 1 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  10.8   0.00068       4.1     239     305 ..     281     349 ..     251     387 .. 0.35

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00068
  Presenilin 239 eeaekkkeeasesskeeeseeesseksaqsse......seeeseeesseaessaeesseekeseessesseee 305
                 ++++++++++s+s+++++s+++s ++s    +      s+++s+++s ++++s++ s+++++s+++s++++++
  CTQ27383.1 281 SDSDSDSDSDSDSDSDSDSDSDSDSDS----DsdsdsdSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDADSDS 349
                 111111111111111111111111111....111111111111111111111111111111111111111111 PP

>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.6    0.0011       6.5     105     212 ..     241     350 ..     226     377 .. 0.39

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0011
       SLC12 105 ihdafdlklavaiLrlkegldvsellqeeeeeeeekekkeaeesekeeeekkkakkkklle.......ekskekeekekleekdsnlslseekk.eeek 195
                 + +  d+  a + + +  g d+ e  +++++++++++++ +++ +++++++++++++++ +       +      ++++ + +ds+++ +++++ ++++
  CTQ27383.1 241 VDADGDTATATLTINIVAGSDIGESDADADSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSdsdsdsdS------DSDSDSDSDSDSDSDSDSDsDSDS 333
                 455557777777778888888886666665554444433333333222222211111111111212110......111111111111111111111111 PP

       SLC12 196 ekkkekkkkkekkeklk 212
                 ++++ +++++++++++ 
  CTQ27383.1 334 DSDSDSDSDSDADSDSD 350
                 11111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1078  (0.0601261); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                       130  (0.00725082); expected 17.9 (0.001)
Passed Fwd filter:                        78  (0.00435049); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.17u 0.36s 00:00:01.52 Elapsed: 00:00:00.50
# Mc/sec: 2556.43
//
Query:       CTQ27385.1  [L=478]
Description: TolC family type I secretion outer membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-43  149.0  36.9    1.8e-28   99.7  10.1    2.1  2  OEP       Outer membrane efflux protein
     0.0089   16.9   3.6      0.036   15.0   0.0    3.1  3  ComP_DUS  Type IV minor pilin ComP, DNA uptake sequence recep


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7  10.1     2e-32   1.8e-28       3     188 .]      73     252 ..      71     252 .. 0.97
   2 !   55.5  18.8   6.8e-19   6.1e-15      13     181 ..     282     451 ..     281     458 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 2e-32
         OEP   3 ellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqleq 101
                 +++++a++ +p+++++  +++ + + +++aka+++P+++++ ++gy++  s++g+  +      + +++sq l+d+gk +++v+aa a + +++a    
  CTQ27385.1  73 TAVKSAVNWHPAINQQVSKLQEQVQKVDVAKAKYYPQVNAGMNNGYSNTYSDSGYSPS------LVVSVSQMLYDFGKVSSSVRAADAAVAQQQAMVML 165
                 789999999*************************************999998887776......*********************************** PP

         OEP 102 arqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                  ++q+++++a+a  ql+  ++++++a++++++++ + +l+++r +aG++sl+dv+q++ r+  a+a+l++++++l+ ++a L+ +lg
  CTQ27385.1 166 NIDQVAHDTASAVVQLQGYQKLVKIAQAQVDSLKHIGDLIRQRNDAGATSLSDVVQTDTRVEGAQATLIQYQAALERWKATLATYLG 252
                 ***********************************************************************************9998 PP

  == domain 2  score: 55.5 bits;  conditional E-value: 6.8e-19
         OEP  13 pdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqleqarqqlrleva 111
                 p+++aa a+  +a+a+++ a a++lPt+sl  +  ++ n+++ +    + ++ s+ +++++p+++gg+  a+++aa++ l aa a  ++a+++  ++++
  CTQ27385.1 282 PAVLAALAQATQAQAQVDNATAQMLPTISLEPQVTHYLNDNYANSAVLNKTQYSAWVKVEMPIYQGGALTASREAAQQTLSAANAGIRNAQLDASQKLS 380
                 7899*****************************************99999999********************************************** PP

         OEP 112 qaylqlllakeqlelaeealklaekalelaeary.kaGlislldvlqaqvrllqaraelaeaeqqlqlara 181
                  +  + +++k++++++++++ l e++ +l++++y ++G+  lld+l+++++ +qa+ +++  e+ql++ ++
  CTQ27385.1 381 ASRDEAVNLKQSIAIQRRQQLLGEQTRALYQDQYlQLGTRPLLDLLNVDQEIYQAQFNQVLTEAQLRNLEL 451
                 *********************************9678*****************************99875 PP

>> ComP_DUS  Type IV minor pilin ComP, DNA uptake sequence receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.1     1e+04      21      37 ..      91     109 ..      85     131 .. 0.52
   2 !   15.0   0.0     4e-06     0.036      10      58 ..     224     280 ..     215     305 .. 0.73
   3 ?    1.3   0.1     0.071   6.3e+02       1      23 [.     343     365 ..     343     377 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHCTS-... CS
    ComP_DUS  21 eaaqalEryytqngtY..a 37 
                 +++ + +++  ++ +Y  +
  CTQ27385.1  91 KLQEQVQKVDVAKAKYypQ 109
                 5555555555555555432 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 4e-06
                 HHHHHHHHHHHHHHHHHHHHHHHCTS-..........S.GGGGTSS-SB-TTSSEEE CS
    ComP_DUS  10 arRaeakaaLleaaqalEryytqngtY........asesaaeklassaasqnkyYti 58 
                 +r   a+a+L+++++alEr+ ++  tY         +es ++ +++++a ++  Y+ 
  CTQ27385.1 224 TRVEGAQATLIQYQAALERWKATLATYlglgsitsVTESVPQAMDAACAVSKIDYRT 280
                 556679*********************999888776677777777777766666654 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.071
                 XXXXXXXHHHHHHHHHHHHHHHH CS
    ComP_DUS   1 PsYqeyvrkarRaeakaaLleaa 23 
                 P Yq   + a R +a+++L  a 
  CTQ27385.1 343 PIYQGGALTASREAAQQTLSAAN 365
                 8899999************8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1121  (0.0625244); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3633.24
//
Query:       CTQ27386.1  [L=715]
Description: Type I secretion system ATPase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-28   97.7   0.1    1.9e-27   96.4   0.1    1.7  1  ABC_tran       ABC transporter
    4.9e-26   92.0   8.7    7.3e-26   91.4   8.7    1.2  1  ABC_membrane   ABC transporter transmembrane region
    0.00061   19.7   0.4       0.08   12.7   0.0    2.3  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    0.00082   18.9   0.0      0.039   13.4   0.0    2.2  1  SMC_N          RecF/RecN/SMC N terminal domain
      0.003   17.3   0.1      0.007   16.1   0.1    1.6  1  AAA_29         P-loop containing region of AAA domain
     0.0059   16.7   0.2      0.023   14.8   0.1    2.1  2  MMR_HSR1       50S ribosome-binding GTPase
     0.0061   16.6   0.0       0.21   11.6   0.1    2.3  2  Dynamin_N      Dynamin family
  ------ inclusion threshold ------
      0.027   14.4   0.0      0.065   13.1   0.0    1.5  1  RsgA_GTPase    RsgA GTPase
      0.037   13.8   0.1       0.19   11.5   0.0    2.0  2  Peptidase_C39  Peptidase C39 family
       0.15   12.0   4.1      0.072   13.1   0.4    2.3  2  Colicin_V      Colicin V production protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.1   1.1e-30   1.9e-27       5     137 .]     501     646 ..     497     646 .. 0.91

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 1.1e-30
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxx RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdeeiekalsklglke 96 
                 +l++k+gek+a++G+ GaGKStLl++++g+++ t+Ge++ld+ +l +++l   r++   l+qe++lf ++ +ren       +sd+e+ k+l+  g  e
  CTQ27386.1 501 QLSIKAGEKIAVLGRIGAGKSTLLQAMMGNVELTSGELRLDDLSLPQIDLADIRRNATLLTQEARLFHGT-LRENvtlgrpmASDDELVKVLELCGALE 598
                 689*******************************************************************.***********99999777777777777 PP

                 .......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  97 .......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                          ++ v +++  LSgGq+q + laral+++p+++llDEpt+
  CTQ27386.1 599 fvnklpmGLEHLVMEGGLGLSGGQRQSLLLARALIRDPNIILLDEPTS 646
                 66666664466666888*****************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   8.7   4.1e-29   7.3e-26       5     273 ..     168     432 ..     165     433 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 4.1e-29
                   HHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHH.SCHHHH CS
  ABC_membrane   5 illailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdt.nsvGel 100
                   +l++++  +l+++  l+  ++ d +++ ++  t  l v++  +l++++++f+l + + ++   +g r   r+  ++f + lr+  +     +s+G++
    CTQ27386.1 168 MLASLAINILALAGILFSMQVYDRVIPAQSYPT--LYVLFSGVLIAAVFNFVLKITRGHVTDLLGKRGDIRISDRVFGHALRL--KNTAVpRSTGSF 260
                   788999999******************999999..************************************************..5556679***** PP

                   HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTT CS
  ABC_membrane 101 lsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafg 197
                   +s + ++++++r+++++++++++ +l  f+   +v+f+++++l+++  + ++l++l   ++ k+l +l +k+q +   +++++ Es++g+  +k + 
    CTQ27386.1 261 ISQI-RELEQVREMMTSTMMTVIADLPFFLLFQLVLFIVSPWLSWIAPVATILMLLPGLLLQKKLAELANKNQHESTLRNAILVESIQGLPDIKMMQ 356
                   ****.9******************************************************************************************* PP

                   THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 198 reeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273
                   +e++fl++++ ++    ++g++  +++  l ++ +++++l+ya +  +G+ lvi+g+++ g +v+ ++l++ ++ +
    CTQ27386.1 357 AESRFLQQWNSYVAITAESGVQTRKVTHGLVSWGMSIQNLLYATVVAVGAPLVINGDITTGAMVAASMLSSRMVAP 432
                   *********************************************************************9988776 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.016        28       6      19 ..     514     527 ..     510     553 .. 0.77
   2 !   12.7   0.0   4.5e-05      0.08     237     303 .]     618     680 ..     616     680 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.016
      AAA_21   6 GpNgsGKSnLLdal 19 
                 G+ g+GKS+LL+a+
  CTQ27386.1 514 GRIGAGKSTLLQAM 527
                 5559*********9 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4.5e-05
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                 lS G+++ l l+ al+r++    ++l+DEp ++ + +  + ++e l + +     +i++TH   +l+
  CTQ27386.1 618 LSGGQRQSLLLARALIRDP---NIILLDEPTSFFDERTEKAFVEQLARWAG-ERTLIIATHKAAVLN 680
                 799*****88888888888...89*******************77744444.79*******887775 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.2e-05     0.039     136     211 ..     617     688 ..     497     694 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.2e-05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                  LSgG+++    +Ll+A   ++   + llDe  +  De+  k+++e l +   +  +i+ ++++ +l+ +d+++ +
  CTQ27386.1 617 GLSGGQRQ----SLLLARALIRDPNIILLDEPTSFFDERTEKAFVEQLARWAGERTLIIATHKAAVLNIVDRILVI 688
                 59****97....899999999999********************************************99998876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.9e-06     0.007      16      43 ..     501     528 ..     497     531 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.9e-06
      AAA_29  16 tieidlkgatlltGpsGsGKSTllDAiq 43 
                 +++i+  + + + G++G+GKSTll A++
  CTQ27386.1 501 QLSIKAGEKIAVLGRIGAGKSTLLQAMM 528
                 67777556999*************9986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.8     5e+03      21      43 ..     366     389 ..     329     396 .. 0.60
   2 !   14.8   0.1   1.3e-05     0.023       1      25 [.     509     533 ..     509     539 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.8
                 TS.TEEESSSTTSSSSEEEEEEEE CS
    MMR_HSR1  21 ge.kaivsdkpgtTrdinegrvkl 43 
                 ++ +ai+++    Tr++++g v++
  CTQ27386.1 366 NSyVAITAESGVQTRKVTHGLVSW 389
                 234677777778888888887764 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.3e-05
                 EEEEEESTTSSHHHHHHHHHTSTEE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekai 25 
                 ++a++Gr  +GKStL++a++g++  
  CTQ27386.1 509 KIAVLGRIGAGKSTLLQAMMGNVEL 533
                 69******************98554 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00012      0.21       1      24 [.     510     533 ..     510     538 .. 0.87
   2 ?    2.4   0.0     0.082   1.5e+02     120     166 ..     627     673 ..     615     675 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
                 EEEEEBTTTTHHHHHHHHHTS--S CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedil 24 
                 iav+G   +GKS++l a++g   l
  CTQ27386.1 510 IAVLGRIGAGKSTLLQAMMGNVEL 533
                 89*****************97655 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.082
                 HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE CS
   Dynamin_N 120 elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvlt 166
                  l++ +i++ +iil+  + +    ++e+ f++++++  g+rt+++ t
  CTQ27386.1 627 LLARALIRDPNIILLDEPTSFFDERTEKAFVEQLARWAGERTLIIAT 673
                 56667778889999988888888899******************988 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.7e-05     0.065      99     131 ..     507     539 ..     481     543 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.7e-05
                  TSEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelktgevs 131
                  ++ ++++G  G+GKStL+ a++++ el  ge++
   CTQ27386.1 507 GEKIAVLGRIGAGKSTLLQAMMGNVELTSGELR 539
                  3556778*****************999998876 PP

>> Peptidase_C39  Peptidase C39 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00011      0.19      17      85 ..      19      88 ..      17      91 .. 0.95
   2 ?   -1.1   0.0      0.86   1.5e+03      33     125 ..     323     369 ..     308     384 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
  Peptidase_C39 17 alamilkyygsevsleeLrelagtdeeGlslsgLkkaakklglkakaikadlkelkelklpaIah.wdgk 85
                   a+a ++++y +++s+ +L   a+   + +  + Lk + ++ gl ++ ++ + ++++ + lp+++  +dg+
     CTQ27386.1 19 AMAFVASHYRQSYSPGTLHAAAEWATQKTLPDALKHLCRHAGLHCQFLNGNDRKMSAWRLPLVVQlKDGQ 88
                   7899***********************************************************9977765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.86
  Peptidase_C39  33 eLrelagtdeeGlslsgLkkaakklgl.kakaikadlkelkelklpaIahwdgklkHfvvvekikkkkvliadPakgkiklskeefekewtgvv 125
                    +L ela+ ++   +l++ +++    gl ++k ++a+ + l++++                                                +v
     CTQ27386.1 323 KLAELANKNQHESTLRNAILVESIQGLpDIKMMQAESRFLQQWNS-----------------------------------------------YV 369
                    555555555666666666666666666456666666666666655...............................................33 PP

>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4     4e-05     0.072      34     136 ..     178     279 ..     167     285 .. 0.77
   2 ?   -0.2   0.4       0.5   8.9e+02      55      78 ..     278     301 ..     258     316 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4e-05
   Colicin_V  34 afvvasllypslaellaelilspalaaiiaflllfllvllivsllgallsklv.sktglglldrllGaifGllkglllvvllllllalvplpkvqewlq 131
                 a ++++l++ ++ + + + ++ p+l+ +++ +l+  +  +++++    +++l+ ++  ++  dr++G ++ l ++++  +   ++ ++ +l++v+e+++
  CTQ27386.1 178 A-LAGILFSMQVYDRVIPAQSYPTLYVLFSGVLIAAVFNFVLKITRGHVTDLLgKRGDIRISDRVFGHALRLKNTAVPRSTGSFISQIRELEQVREMMT 275
                 3.44555555555555665677*******************************66666788*********99999999999999999999999885554 PP

   Colicin_V 132 nSvla 136
                  S+++
  CTQ27386.1 276 -STMM 279
                 .4444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.5
   Colicin_V  55 spalaaiiaflllfllvllivsll 78 
                   ++ a + f+llf lvl+ivs  
  CTQ27386.1 278 MMTVIADLPFFLLFQLVLFIVSPW 301
                 556667778999999999998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 5238.07
//
Query:       CTQ27387.1  [L=406]
Description: Secretion ABC efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-21   76.2   0.5    6.9e-17   62.1   0.1    2.6  2  HlyD_3           HlyD family secretion protein
    4.2e-11   42.5   0.8    2.8e-09   36.5   0.8    2.2  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    2.7e-08   33.5   1.9    4.4e-07   29.6   0.1    2.8  2  Biotin_lipoyl_2  Biotin-lipoyl like
    7.9e-07   28.9   0.0    1.1e-06   28.4   0.0    1.3  1  HlyD             HlyD membrane-fusion protein of T1SS
  ------ inclusion threshold ------
      0.017   15.0   0.3        3.7    7.5   0.0    2.6  2  Biotin_lipoyl    Biotin-requiring enzyme
      0.065   13.4   0.1       0.42   10.9   0.0    2.3  2  Peptidase_M23    Peptidase family M23
      0.098   12.6   0.1         20    5.2   0.0    3.0  3  RnfC_N           RnfC Barrel sandwich hybrid domain
        0.1   12.8   0.0          2    8.7   0.0    2.6  2  fn3_6            Fibronectin type-III domain
       0.39   10.5   8.0        0.8    9.5   8.0    1.5  1  OEP              Outer membrane efflux protein


Domain annotation for each model (and alignments):
>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00015      0.29       7      34 ..      81     108 ..      75     137 .. 0.83
   2 !   62.1   0.1   3.5e-20   6.9e-17       1     103 [.     255     369 ..     255     372 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
      HlyD_3   7 dGvvvelnveegevvqagdelleiippd 34 
                 +G+++elnv+eg+ v+ag++++++ p++
  CTQ27387.1  81 GGILTELNVREGSRVAAGQVVARLDPTR 108
                 58889*******************9974 PP

  == domain 2  score: 62.1 bits;  conditional E-value: 3.5e-20
      HlyD_3   1 tlrApvdGvvvelnv.eegevvqagdelleiipp.dtllveakvpaadlgsikkkgqkvtlkld..qgsdy.tlkgkierisp.....tvdaktgaykv 89 
                 t+r+pv+G+v+ ++v + g v++++ el+ i+p   +ll+ea+++++d+++i+ + qk+ +k++  ++  y +l+g +e isp     +++++ ++y+v
  CTQ27387.1 255 TVRSPVQGIVKNIKVnTIGGVIAPNGELMDIVPIdGRLLIEARISPRDIAFIH-PDQKALVKITayDYAIYgALNGVVETISPdtiqdEAKPDVYYYRV 352
                 79*************999***************736****************8.9999999988889****************5444444678999999 PP

      HlyD_3  90 evslenpe...kksipl 103
                  ++ ++++   k+++++
  CTQ27387.1 353 FIRTDHNYlenKRGKRF 369
                 99**9998877666665 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.8   1.4e-12   2.8e-09      26     192 ..      80     338 ..      68     342 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.4e-12
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXX.................................................... CS
    HlyD_D23  26 veGwveklyvnatgdkVkkGqpLaely....spelvaaqeeyllalk.................................................... 68 
                   G  ++l+v+ +g++V++Gq +a+l+     +++ ++q++y + l+                                                    
  CTQ27387.1  80 DGGILTELNVR-EGSRVAAGQVVARLDptrsESNVGESQAKYRASLAasirltaevnnqplifppslkawpgllaeetrlyhsrreqltksmrqleqsl 177
                 46788999999.999999999999997333235788999999999999999999999999999999999999999999999988888888777777777 PP

                 ......................XXXXXXXX.....................XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  69 ......................akkklkkke....................lleaarerLrllgvseeqiaelektg.kvqktvtvkapisGvVteknv 124
                                       +                             +  are+L   + + +++ae+ k + +   ++tv++p++G+V + +v
  CTQ27387.1 178 slvnselaineklaktgaasnvE-------VlrlrqqaadielkkidlntrYYVDAREQLSKANADVASLAEVIKGRaDSVARLTVRSPVQGIVKNIKV 269
                 77777777666665555555550.......0555555555666778888889999****************988766156789**************** PP

                 XX.XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 125 re.Gqyvqpgdtlftiadls.tVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyptvdpet 192
                 ++ G ++ p+ +l+ i  ++ ++ +ea +  +++a ++++qk+ v+++a++   + G ++ + +t+ p+t
  CTQ27387.1 270 NTiGGVIAPNGELMDIVPIDgRLLIEARISPRDIAFIHPDQKALVKITAYDY-AIYGALNGVVETISPDT 338
                 755***************9768****************************87.55555555555555554 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.1   2.2e-10   4.4e-07      10      40 ..      80     111 ..      74     120 .. 0.86
   2 ?    2.1   0.2     0.088   1.8e+02       4      18 ..     255     269 ..     250     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.2e-10
  Biotin_lipoyl_2  10 sG.rVaqlnVkdGqrVkaGdvLaelDsralql 40 
                      +G  +++lnV++G rV aG+v a+lD+++ + 
       CTQ27387.1  80 DGgILTELNVREGSRVAAGQVVARLDPTRSES 111
                      666*************************9885 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.088
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnV 18 
                      ++ +pv G V+ + V
       CTQ27387.1 255 TVRSPVQGIVKNIKV 269
                      899********9998 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   5.5e-10   1.1e-06       4      65 ..      47     348 ..      44     391 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 5.5e-10
                 EEEEEEEEE.......................................................................................... CS
                 xxxxxxxxx.......................................................................................... RF
        HlyD   4 vfvawaala.......................................................................................... 12 
                 v+ +wa +a                                                                                          
  CTQ27387.1  47 VTGVWAWFAtldevstgtgkvipssreqvlqtldggiltelnvregsrvaagqvvarldptrsesnvgesqakyraslaasirltaevnnqplifppsl 145
                 555666666667777777777777777777777777777777777788888888888888888888888888888888888888888888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  CTQ27387.1 146 kawpgllaeetrlyhsrreqltksmrqleqslslvnselaineklaktgaasnvevlrlrqqaadielkkidlntryyvdareqlskanadvaslaevi 244
                 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                 .......................................................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSBEEEEEE CS
                 .......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  13 .......................................................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispdrvpvrv 56 
                                                                         +d+ ++++ q+++v+ +A+ +  +g   gvV +ispd     +
  CTQ27387.1 245 kgradsvarltvrspvqgivknikvntiggviapngelmdivpidgrlliearisPRDIAFIHPDQKALVKITAYDYAIYGALNGVVETISPD----TI 339
                 889999999999999999999999999999999999999999999999999999999************************************....88 PP

                 EEEEEETTE CS
                 xxxxxxxxx RF
        HlyD  57 vvekaqgpy 65 
                 ++e +   y
  CTQ27387.1 340 QDEAKPDVY 348
                 888665544 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0018       3.7      50      72 ..      81     103 ..      73     106 .. 0.62
   2 ?    4.9   0.1     0.012        23      43      59 ..     254     270 ..     252     285 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0018
                    SEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl  50 aGvvkeilvkeGdtvevgdllak 72 
                     G+++e+ v eG+ v +g+++a+
     CTQ27387.1  81 GGILTELNVREGSRVAAGQVVAR 103
                    45666666666666666666655 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.012
                    EEEEBSSSEEEEEESST CS
  Biotin_lipoyl  43 meieapkaGvvkeilvk 59 
                     ++ +p++G+vk i+v+
     CTQ27387.1 254 LTVRSPVQGIVKNIKVN 270
                    6899***********98 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00021      0.42      32      77 ..      63     109 ..      51     133 .. 0.77
   2 ?   -1.3   0.1       1.3   2.6e+03      15      37 ..     255     276 ..     246     280 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
                    TTEEEEEEEECTCEEEEEEE.ESEESS-TTEEE-TTCEEEEEBSTSS CS
  Peptidase_M23  32 gyGnvviidhgdgystlyah.lskisvkegqkVkaGqvIGtvgstgr 77 
                    g+G+v+    ++ ++tl +  l +++v+eg +V+aGqv+++   t  
     CTQ27387.1  63 GTGKVIPSSREQVLQTLDGGiLTELNVREGSRVAAGQVVARLDPTRS 109
                    55666666666666666665478899**************9986663 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
                    EEEESSSEEEEEEEEETTTEEEE CS
  Peptidase_M23  15 pVlAaadGtVvfagkkegyGnvv 37 
                    +V+++ +G V +++ + ++G v+
     CTQ27387.1 255 TVRSPVQGIVKNIKVN-TIGGVI 276
                    7999******988876.566665 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.04        80      40      62 ..      83     105 ..      68     113 .. 0.83
   2 ?    5.2   0.0      0.01        20      59      83 ..     246     270 ..     199     285 .. 0.73
   3 ?   -0.4   0.0      0.55   1.1e+03      67      99 ..     321     357 ..     311     359 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.04
      RnfC_N  40 apakplvkvgdkVlkGqkiaeae 62 
                   +++ v +g +V  Gq++a+ +
  CTQ27387.1  83 ILTELNVREGSRVAAGQVVARLD 105
                 5567889************9876 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.01
      RnfC_N  59 aeaegfvsapvhasvsGtVkaiekr 83 
                 ++a+++  + v ++v G Vk+i+  
  CTQ27387.1 246 GRADSVARLTVRSPVQGIVKNIKVN 270
                 467888899*************865 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.55
      RnfC_N  67 apvhasvsGtVkaiekrlvahgsg....veavvienD 99 
                  +++    G V +i++ +++ +++       v i++D
  CTQ27387.1 321 YAIYGALNGVVETISPDTIQDEAKpdvyYYRVFIRTD 357
                 57999999********999988774422236666666 PP

>> fn3_6  Fibronectin type-III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0     0.001         2      22      56 ..     107     141 ..      94     147 .. 0.87
   2 ?    1.0   0.0      0.24   4.9e+02      45      69 ..     294     318 ..     286     360 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.001
       fn3_6  22 tRtvtnVgsseatYkakveapegvkvtVePseLef 56 
                 tR+  nVg+s+a+Y+a++ a   ++ +V+ + L f
  CTQ27387.1 107 TRSESNVGESQAKYRASLAASIRLTAEVNNQPLIF 141
                 78889********************9999988877 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.24
       fn3_6  45 vkvtVePseLefsekgekksftvtv 69 
                 ++ +++P+ ++f ++++k+ +++t 
  CTQ27387.1 294 IEARISPRDIAFIHPDQKALVKITA 318
                 6789999999999999999998875 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   8.0    0.0004       0.8     108     176 ..     154     222 ..     152     237 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0004
         OEP 108 levaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqql 176
                 +e++ +  + +++ ++ +++e++l l ++ l++ e+++k G++s ++vl+ +++ ++ +++ +   + +
  CTQ27387.1 154 EETRLYHSRREQLTKSMRQLEQSLSLVNSELAINEKLAKTGAASNVEVLRLRQQAADIELKKIDLNTRY 222
                 566667777778889999************************************999999888765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       927  (0.0517039); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3037.57
//
Query:       CTQ27388.1  [L=1044]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-26   93.5   0.0    1.9e-26   92.6   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    3.8e-22   79.2   0.0    8.5e-22   78.0   0.0    1.6  1  Glyco_trans_1_4  Glycosyl transferases group 1
     0.0014   19.0   0.0     0.0062   16.9   0.0    2.1  1  Glyco_trans_1_2  Glycosyl transferases group 1
     0.0064   16.5   0.0      0.021   14.8   0.0    1.9  1  Glyco_transf_4   Glycosyltransferase Family 4
  ------ inclusion threshold ------
      0.029   14.8   0.0       0.16   12.4   0.0    2.4  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
       0.17   11.9   0.1       0.45   10.5   0.1    1.7  1  YokU             YokU-like protein, putative antitoxin


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   0.0   6.3e-30   1.9e-26       5     169 ..     837     999 ..     833    1005 .. 0.94

  Alignments for each domain:
  == domain 1  score: 92.6 bits;  conditional E-value: 6.3e-30
                      HHHHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEE CS
  Glycos_transf_1   5 krkklgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvl 98 
                      k   ++ +e  +++++++r ++eK + +l  af+++ +q +p+++l+ +G g+ + +l++++++ +l+d +++ g+ s  d+ +++++a ++vl
       CTQ27388.1 837 KIPVNPQKEPSETVIYLARYSEEKQHLTLFNAFRKVSAQ-RPDARLHTYGVGPLRRKLSDQVKAWGLEDVIKINGFTS--DIAAVHRHACCTVL 927
                      55667778999*************************998.**************************************..************** PP

                      EESSBSS-HHHHHHHHTT--EEEET.TTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHH CS
  Glycos_transf_1  99 psisEgfGivllEAmaaglpviasn.aggpaevvkdgetGllvkpnnaealaeairklledeelrerlgena 169
                       s  Eg  ++++EAm +g+p i+ +  +gp+++++d + G+lv+ +n eala+a+ ++++d+ l++++  +a
       CTQ27388.1 928 CSNQEGQSLSAVEAMVYGTPLISFAiKYGPRDILQDRQAGILVPYGNEEALAAALVRVISDKALQKEMQAAA 999
                      **************************************************************8777777665 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.0   2.8e-25   8.5e-22       3     134 .]     849     988 ..     847     988 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 2.8e-25
                      EEEEES---GG.GTHHHHHHHHHHHH.H.H.EEEEEES---...HHHHHHHT..T-T.TEEEE---THHHHHHHH-SEEEE--..---SHHHHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkk.d.vrlvivGdgp.rpeeleelaa..gleerveftGfvedlaellaaadvfvaPs..egfglkllE 89 
                      +++++ r++ ++k++  l +a+ ++ ++ + +rl+ +G gp r ++l ++++  gle+ +++ Gf +d+a++ ++a ++v++s  eg +l+++E
       CTQ27388.1 849 TVIYLARYS-EEKQHLTLFNAFRKVSAQrPdARLHTYGVGPlR-RKLSDQVKawGLEDVIKINGFTSDIAAVHRHACCTVLCSnqEGQSLSAVE 940
                      7999****5.55**********999977536**********76.59*9999779**999*************************99******** PP

                      HHHTT-EEEE-TGG.GTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  90 amaaglpvVatdvg.giaevv..gengllvppgdpealaeailrLled 134
                      am +g+p ++++++ g+++++   ++g+lvp g++eala+a++r+++d
       CTQ27388.1 941 AMVYGTPLISFAIKyGPRDILqdRQAGILVPYGNEEALAAALVRVISD 988
                      *************9899**9997799******************9987 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.1e-06    0.0062       4      81 ..     927    1007 ..     924    1020 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.1e-06
  Glyco_trans_1_2    4 npsrsespnlrlfEaaacGafaltdda.egleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaeh 81  
                        +s++e+ +l  +Ea+  G+++++ ++  g+++++++ + +il+   ++e la+++ +++++ ++ +++ +aa + +++ +
       CTQ27388.1  927 LCSNQEGQSLSAVEAMVYGTPLISFAIkYGPRDILQDRQAGILVPygNEEALAAALVRVISDKALQKEMQAAAMRNARRYY 1007
                       578899999999*************8899**********************************************977665 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   7.1e-06     0.021     101     168 ..     775     835 ..     754     837 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.1e-06
  Glyco_transf_4 101 ltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDl 168
                     + +H++        + + +  +++ le+   + +dr+i+ +++  ++l++  g+p ++++Vipn  D 
      CTQ27388.1 775 AVIHSHHQ----LLNGGIKASYRHLLEQP--QLVDRLIVLTDEQWQDLQQ-EGIPGARLVVIPNHMDD 835
                     44444441....12333444444444444..69*****************.*************8775 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.4e-05      0.16      97     159 ..     773     831 ..     730     832 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.4e-05
  Glyco_trans_4_4  97 iplvvtlhglllrrgsgavrrlyralerrllrradavlvvseaeaeelralgvpadrvvvvpn 159
                      +  v++ h  ll++g   ++++++ le+   + +d+++v++++  ++l++ g+p +r+vv+pn
       CTQ27388.1 773 VSAVIHSHHQLLNGG--IKASYRHLLEQP--QLVDRLIVLTDEQWQDLQQEGIPGARLVVIPN 831
                      555666666655544..455556666665..449****************************9 PP

>> YokU  YokU-like protein, putative antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00015      0.45      52      87 .]      70     105 ..      60     105 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
        YokU  52 keiedqllLvdtkklpesityeeLmkkerlLkrnyf 87 
                 ++ e q l +d  +  e++t+e+L+kk ++ krnyf
  CTQ27388.1  70 QDNETQWLRIDIVDSVEKLTWENLLKKLNITKRNYF 105
                 56689999***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1044 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 6969.04
//
Query:       CTQ27389.1  [L=291]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.076   13.0   0.0       0.19   11.7   0.0    1.6  1  DUF1778   Protein of unknown function (DUF1778)


Domain annotation for each model (and alignments):
>> DUF1778  Protein of unknown function (DUF1778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.1e-05      0.19      27      57 ..     123     153 ..     122     157 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.1e-05
     DUF1778  27 dFvleaaleaAekviedherieLseedfqaf 57 
                 +Fvl+aale A+++   he+++L +  ++ f
  CTQ27389.1 123 KFVLNAALEPARNITPAHEFFHLYQYGYAVF 153
                 5**********************99888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2256.18
//
Query:       CTQ27390.1  [L=105]
Description: DNA-binding protein, hemimethylated [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-20   73.2   0.0    2.1e-20   73.0   0.0    1.0  1  YccV-like  Hemimethylated DNA-binding protein YccV like


Domain annotation for each model (and alignments):
>> YccV-like  Hemimethylated DNA-binding protein YccV like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   1.2e-24   2.1e-20       2      96 ..       5      96 ..       4      98 .. 0.93

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 1.2e-24
   YccV-like  2 kyrvGqvvrhkrygyrGVivgwdeecaaseewiekigveelsegrnqpfYhvlvdtedsekvsvrYvaeenlelikssepiehpeigkyFkrfdg 96
                k+ +Gq vrh + gy GViv++d+e++  e+  ++i+ +  +e r  p+Yhv+++++d ++++ +Y+ae +l  ++++e+ e+p+++++ k +++
  CTQ27390.1  5 KFGIGQQVRHTLLGYLGVIVDVDPEYSLAEPEEDEIAAN--DELRAAPWYHVVMEDDDGQPIH-TYLAEAQLSSETRDEHPEQPSLDELAKTIRQ 96
                8***************************99999999886..78999*************9887.5************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 867.38
//
Query:       CTQ27391.1  [L=400]
Description: putative AdoMet-dependent methyltransferase, UPF0064 family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-29  103.1   0.0      2e-29  102.7   0.0    1.2  1  Methyltrans_SAM  S-adenosylmethionine-dependent methyltransfe
    9.6e-20   70.2   0.1    1.8e-19   69.3   0.1    1.5  1  PUA_3            PUA-like domain
    1.7e-11   44.1   0.0    2.7e-11   43.4   0.0    1.2  1  Cons_hypoth95    Conserved hypothetical protein 95
    1.1e-10   41.5   0.1    1.9e-10   40.7   0.1    1.3  1  Methyltransf_31  Methyltransferase domain
    9.5e-07   28.5   0.0    1.5e-06   27.9   0.0    1.2  1  MTS              Methyltransferase small domain
    5.1e-06   27.1   0.0    1.1e-05   26.0   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
      1e-05   25.4   0.0    2.1e-05   24.4   0.0    1.6  1  PUA              PUA domain
      1e-05   25.2   0.0    1.5e-05   24.6   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
    0.00032   21.3   0.0      0.001   19.7   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
     0.0023   17.4   0.0     0.0033   16.8   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.008   15.4   0.0      0.011   15.0   0.0    1.1  1  TRM              N2,N2-dimethylguanosine tRNA methyltransfera
  ------ inclusion threshold ------
      0.027   15.2   0.1      0.081   13.7   0.0    1.8  2  Methyltransf_12  Methyltransferase domain
       0.15   11.3   0.0       0.22   10.8   0.0    1.1  1  Methyltransf_10  RNA methyltransferase
       0.16   11.6   0.1       0.87    9.2   0.1    1.9  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F


Domain annotation for each model (and alignments):
>> Methyltrans_SAM  S-adenosylmethionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   1.5e-32     2e-29      85     266 ..     186     375 ..     114     385 .. 0.85

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 1.5e-32
  Methyltrans_SAM  85 spvvvesglkyqldigrnqnfglfldmrlgrdwvqenakdknvlnlfaytcgfsvaaiaggaskvvnvdmargslnkgrdnhrlnghdlrrvsf 178
                         + e+g+k  +di    ++g +ld r  r   +   +dk+vln f+yt gf+v+a+ gg+++v  vd ++ +l+  r+n  +ng dl++ +f
       CTQ27391.1 186 LLPITEHGMKLLVDIQGGHKTGYYLDQRDSRLATRRYVADKRVLNCFSYTGGFAVSALMGGCRQVTSVDTSQEALDVARQNVEINGLDLSKAEF 279
                      45699***************************************************************************************** PP

  Methyltrans_SAM 179 lgydifkswgkikksg.pydlviidppsfqkgsfal...tkdykkilrrlpellveggevlacvnspavspdflieemaeea....pslefver 264
                      +  d+fk   k + +g ++d++++dpp f      l    + yk i     +ll +gg +l+   s  +++d++ + +a+ a     +++f+e+
       CTQ27391.1 280 VRDDVFKLLRKYRDQGeKFDVIVMDPPKFVENKSQLmgaCRGYKDINMLAIQLLNPGGVLLTFSCSGLMTTDLFQKIIADAAidagRDVQFIEQ 373
                      *************998469**********7655444222699******9************999999999997654444333111256888887 PP

  Methyltrans_SAM 265 ld 266
                      + 
       CTQ27391.1 374 FR 375
                      65 PP

>> PUA_3  PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.1   1.4e-22   1.8e-19       2      64 .]      10      72 ..       9      72 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 1.4e-22
       PUA_3  2 iLkkkaekrlrqGhPwvfsneiasvegeledGdvVdvfsekgkflGtGyynpqskiavRilsr 64
                 L k++ek+l+++hPw+fs+ +a++eg++++G+ +d+++++gk+l++G y+p s+i++R++++
  CTQ27391.1 10 VLAKGREKSLLRRHPWIFSGGVARMEGKARSGETIDIVDHQGKWLARGAYSPSSQIRARVWTF 72
                699*********************************************************996 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   2.1e-14   2.7e-11      38     122 ..     221     306 ..     216     333 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 2.1e-14
                    CCHCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--T.TTEEEEES-HHHHCTS--SS-EEEEEEE--S CS
  Cons_hypoth95  38 aeiegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelklee.etaelkedaleallklakkkeefdivflDPP 122
                     ++ ++rvL++f+ +G+ ++ Al  g+++++ v++++ea+ + ++n+e  +l+  +++ +++d ++ l+k   ++e+fd++ +DPP
     CTQ27391.1 221 RYVADKRVLNCFSYTGGFAVSALMGGCRQVTSVDTSQEALDVARQNVEINGLDLsKAEFVRDDVFKLLRKYRDQGEKFDVIVMDPP 306
                    56899*******************************************99999867788888888999999999************ PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.1   1.5e-13   1.9e-10      15     117 ..     236     351 ..     224     380 .. 0.72

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.5e-13
  Methyltransf_31  15 GeltfelaeelgpkaevvGiDiseeaielArenaqklgld..nveFeqgdiee.leklled..ekfDlilsnevl...naladpdkile..... 95 
                      G ++  +   +g   +v+++D s+ea+ +Ar+n + +gld   +eF + d+++ l k + d  ekfD+i+ + +    n    + + ++     
       CTQ27391.1 236 GGFAVSAL--MGGCRQVTSVDTSQEALDVARQNVEINGLDlsKAEFVRDDVFKlLRK-YRDqgEKFDVIVMDPPKfveN----KSQLMGacrgy 322
                      55544444..777789***********************999***********5554.77788********94443341....22222233335 PP

  Methyltransf_31  96 .....eiervlkpggilliedpr..llae 117
                            ++++l+pgg+ll+ +++  + ++
       CTQ27391.1 323 kdinmLAIQLLNPGGVLLTFSCSglMTTD 351
                      5555699***************9543333 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.2e-09   1.5e-06      56     152 ..     248     356 ..     225     367 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.2e-09
                 .EEEEEESBHHHHHHHHHHHHHTTGC...EEEEE-STTTTSTT.....S-EEEEEE---.STTTCHCHHHH...HHHHHHHHHHHEEEEEEEEEEEETT CS
         MTS  56 aevtlvdvdarAlesakenleankle...vevvasdvleevee.....kkfdlivsNPP.fhagkatelav...aeeliaeAkeaLkegGeLliVanrk 142
                  +vt vd + +Al++a++n+e n+l+   +e+v  dv++ + +     +kfd+iv+ PP f ++k +   +    +++   A + L++gG Ll    + 
  CTQ27391.1 248 RQVTSVDTSQEALDVARQNVEINGLDlskAEFVRDDVFKLLRKyrdqgEKFDVIVMDPPkFVENKSQLMGAcrgYKDINMLAIQLLNPGGVLLTFSCSG 346
                 579***********************999*******98766422223389*********655555543333111567888899*******999887777 PP

                 SCHHHHHHHH CS
         MTS 143 lgyeslleel 152
                 l   +l +++
  CTQ27391.1 347 LMTTDLFQKI 356
                 7766666655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   8.5e-09   1.1e-05       9      70 ..     236     303 ..     228     322 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 8.5e-09
                      SHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBC....CGBSSSTTTEEEEEE CS
  Methyltransf_25   9 GrltlalakrlgkakvtgvDiseemleaareraeeegl...nvefvqgda....edlpfedgsfDlvvs 70 
                      G ++  ++   g  +vt vD s+e+l+ ar+++e +gl   ++efv+ d+    +++  + ++fD++v+
       CTQ27391.1 236 GGFAVSALMG-GCRQVTSVDTSQEALDVARQNVEINGLdlsKAEFVRDDVfkllRKYRDQGEKFDVIVM 303
                      5555554433.589*******************9999999**********433333457888*****98 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.7e-08   2.1e-05       2      57 ..       8      64 ..       7      69 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.7e-08
                EEEE-HHHHHHHHT.T-EEEGGGEEEEETT--TTSEEEEEETTSCEEEEEEESS-HH CS
         PUA  2 rvvvddgAvkalls.gasLlapGvvevegdfeegdvVaivdedgelvavGlanysse 57
                r+v+ +g  k ll+    ++  Gv ++eg+ + g++++ivd++g+ +a+G    ss+
  CTQ27391.1  8 RLVLAKGREKSLLRrHPWIFSGGVARMEGKARSGETIDIVDHQGKWLARGAYSPSSQ 64
                577888888999996669*********************************999986 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.2e-08   1.5e-05       3      80 ..     227     306 ..     225     308 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.2e-08
  Methyltransf_15   3 vilDlfsGaGGnviqfalv.fekviaieinleklacaqhNaevYgv.sdkitlvlgdvfellaklklekikvdlvflSpP 80 
                       +l  fs +GG ++   +   ++v ++++++e l +a +N e+ g   +k  +v  dvf+ll+k + +  k+d++++ pP
       CTQ27391.1 227 RVLNCFSYTGGFAVSALMGgCRQVTSVDTSQEALDVARQNVEINGLdLSKAEFVRDDVFKLLRKYRDQGEKFDVIVMDPP 306
                      68999**99*9888755553789***********************789******************************9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   7.9e-07     0.001       8      67 ..     237     303 ..     233     319 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 7.9e-07
                      SHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCCT..SS-T..T-EEEEEE CS
  Methyltransf_11   8 GrlaealakrgarvvgvDlskemlklakekaseegl...kvefvvadaekl..pfed..nsfDlvvs 67 
                      G  + al+  +++v+ vD+s+e+l++a+++++ +gl   k efv+ d+ kl  +++d  ++fD++v+
       CTQ27391.1 237 GFAVSALMGGCRQVTSVDTSQEALDVARQNVEINGLdlsKAEFVRDDVFKLlrKYRDqgEKFDVIVM 303
                      66777788566****************************99*********6578**9666****986 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.6e-06    0.0033     173     231 ..     236     302 ..     218     304 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.6e-06
        PrmA 173 GiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.klevalseellk........eekadviv 231
                 G  a+ a++ g ++v+ vD+ + A++va++N+e+N+++  k e ++ ++++k         ek+dviv
  CTQ27391.1 236 GGFAVSALMGGCRQVTSVDTSQEALDVARQNVEINGLDLsKAE-FVRDDVFKllrkyrdqGEKFDVIV 302
                 5679999999*************************99884443.455666633334444578999999 PP

>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.2e-06     0.011      45     128 ..     220     305 ..     208     330 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.2e-06
                 HHH-S-EEEEESS-TTSHHHHHHHHH-S-EEEEEEE-S-HHHHHHHHHHHHHTT--.GGEEEE-S-HHHHHC...--SS-EEEEEE-- CS
         TRM  45 kklgekikvldaLsasGlRaiRfalEvpgvkevlaNDisekAvelikeNvklneve.eivvineddAnvlla...ekkkrfdviDlDP 128
                 ++ +++ +vl+ +s +G  a+  ++   g ++v   D s++A+++ ++Nv++n  +    ++ +dd   ll+    + ++fdvi +DP
  CTQ27391.1 220 RRYVADKRVLNCFSYTGGFAVSALMG--GCRQVTSVDTSQEALDVARQNVEINGLDlSKAEFVRDDVFKLLRkyrDQGEKFDVIVMDP 305
                 55556667888888888777777665..999************************9757899999*9999998878899********9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.4e-05     0.081      21      72 ..     248     303 ..     233     315 .. 0.89
   2 ?   -3.0   0.0       9.9   1.3e+04      91      99 .]     331     339 ..     325     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.4e-05
  Methyltransf_12  21 ieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.....ssfDlvva 72 
                       ++t vD s++a+ d +++  ++++++ ++ e+  +d+++l  +     ++fD++v+
       CTQ27391.1 248 RQVTSVDTSQEAL-DVARQNVEINGLDLSKAEFVRDDVFKLLRKyrdqgEKFDVIVM 303
                      5788*********.99999999999**************99999************8 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.9
  Methyltransf_12  91 klLkpgGrl 99 
                      +lL+pgG+l
       CTQ27391.1 331 QLLNPGGVL 339
                      79*****87 PP

>> Methyltransf_10  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00017      0.22     130     231 ..     251     347 ..     239     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
                      EEEES-HHHHHHHHHHHHHT.T-T.TTEEEEE--TT-SCCHHSSTTSS-EEEEEE-S---SS------------...---.....--------- CS
  Methyltransf_10 130 vgsevddvslasakaivesnskls.daiklrkqkekkaifdglieenerydvtlCnPPfhaslaeakagserklknlgkanktralpslnfgGq 222
                      ++ ++++ +l+ a+++ve n  l+ ++ + ++  +  +++    ++ e++dv + +PP + + +    g+ r  k+++      a   ln gG 
       CTQ27391.1 251 TSVDTSQEALDVARQNVEIN-GLDlSKAEFVR-DDVFKLLRKYRDQGEKFDVIVMDPPKFVENKSQLMGACRGYKDINM----LAIQLLNPGGV 338
                      4669999*************.55513444444.677899999****************999999999999999988855....47778888888 PP

                      TTTSHHHHH CS
  Methyltransf_10 223 kaelyceGG 231
                         + c G 
       CTQ27391.1 339 LLTFSCSGL 347
                      888888775 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00068      0.87      26      88 ..     240     306 ..     233     373 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00068
                      HHHHTTTTSEEEEEESSCCCHHHHHHH..HHHTT--SEEEEES-CTCCHHHHCC....EEEEEEEE- CS
  Methyltr_RsmB-F  26 iaelmknkgtvvAvdankeRlkrvaen..lkrLgvtntivleaDarkidkvlgg..elfDriLlDaP 88 
                      +++lm    +v+ vd+++e l+   +n  +++L + ++  ++ D+ k  +   +  e+fD i +D P
       CTQ27391.1 240 VSALMGGCRQVTSVDTSQEALDVARQNveINGLDLSKAEFVRDDVFKLLRKYRDqgEKFDVIVMDPP 306
                      567899999************999998335799999********9887665544469********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2805.44
//
Query:       CTQ27392.1  [L=184]
Description: putative kinase inhibitor; DLP12 prophage [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-36  126.1   0.0    1.3e-36  125.8   0.0    1.1  1  PBP           Phosphatidylethanolamine-binding protein
  ------ inclusion threshold ------
       0.16   11.8   0.1       0.26   11.1   0.1    1.3  1  Peptidase_S3  Alphavirus core protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.0   1.5e-40   1.3e-36       7     130 ..      49     180 ..      36     181 .. 0.93

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 1.5e-40
                 CSBGGS-EEEEES--TTSSEEEEEEEETTSCCTCTTEEEEEEEEEETTSSEE-TTC............EE-B-TTSSCCCCS---B--STTS..EEEEE CS
         PBP   7 egentsPplswsdvpegtksyalvviDpDapkvsetflHwvvtnipasvtslpega............vqgknslgeesesgYlgpcPpkgdgkHrYvf 93 
                 +g+n+sP+l+w+++p+gt+s+a++v DpDap+ s+ ++Hw v+ni  sv slp+ga            +qg+n++g    +g++g+cPp+gd++HrY f
  CTQ27392.1  49 TGGNVSPQLAWKNAPAGTRSFAVTVRDPDAPTGSG-WWHWTVVNIASSVFSLPAGAgdknsatlpggaIQGRNDFGY---AGFGGACPPAGDKPHRYRF 143
                 799****************************8888.******************999999****************9...************99***** PP

                 EEEEESSSG--BGSS-SHHHHHHHHCTTEEEEEEEEE CS
         PBP  94 llyaldvealdlkagftraelgaaiaghvlakatlag 130
                 +++aldv++l ++ag++ a +g  ++ h+la+a+l++
  CTQ27392.1 144 TVWALDVPTLPVDAGASGALVGYLLHSHALASAQLTA 180
                 *********99****999999999**********997 PP

>> Peptidase_S3  Alphavirus core protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1     3e-05      0.26      64     112 ..      63     112 ..      54     124 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3e-05
                   -GGGCCCSB-B-S.---SEEEEETTEEEEEETTEEEEETTS--TT-TT-E CS
  Peptidase_S3  64 pvnmrseaskyts.ekpegfynwhhgavqysggrftiprgvgkrgdsgrp 112
                   p   rs a++  + + p g   wh   v+ +   f++p g+g++  +  p
    CTQ27392.1  63 PAGTRSFAVTVRDpDAPTGSGWWHWTVVNIASSVFSLPAGAGDKNSATLP 112
                   666777777765427899************************99876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1466.89
//
Query:       CTQ27393.1  [L=262]
Description: Bacterial regulatory protein, AraC family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-16   58.3   2.8    8.7e-16   58.0   0.8    2.2  3  HTH_18        Helix-turn-helix domain
    2.9e-09   36.8   0.2    0.00027   21.0   0.0    2.5  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
    0.00061   19.5   0.5     0.0024   17.6   0.1    2.2  2  HTH_23        Homeodomain-like domain
     0.0024   17.6   0.1     0.0065   16.2   0.1    1.7  1  HTH_8         Bacterial regulatory protein, Fis family
  ------ inclusion threshold ------
      0.019   14.6   0.0       0.03   14.0   0.0    1.5  1  AraC_N        AraC-type transcriptional regulator N-terminus
      0.042   13.3   4.2       0.17   11.3   0.1    2.8  3  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.2   3.7e+03      29      38 ..      17      26 ..       6      34 .. 0.62
   2 ?   -2.9   0.0       2.8   8.4e+03      60      77 ..     162     179 ..     159     180 .. 0.72
   3 !   58.0   0.8   2.9e-19   8.7e-16       2      79 ..     187     262 .]     186     262 .] 0.96

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.2
                HHHHHHHHHH CS
      HTH_18 29 rrlRlerArr 38
                +++Rl+r +r
  CTQ27393.1 17 TTRRLCRLHR 26
                3344444433 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHHSS-HHH CS
      HTH_18  60 lsrFsrafrklfgetPse 77 
                 ++++s+  r+l  ++P++
  CTQ27393.1 162 QQNLSAQVRQLIMLSPAQ 179
                 677788888888887765 PP

  == domain 3  score: 58.0 bits;  conditional E-value: 2.9e-19
                 HHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHH CS
      HTH_18   2 aaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyr 79 
                 a++l + ++tL+r++++   +++++ + ++R+ +A  +L ++t++++ eiA  +G+++ srF++ fr+++g++P+++r
  CTQ27393.1 187 AKMLFLGESTLRRRLQQ-ESQSFRQIVEEVRMAHALGQL-QTTSRPIGEIAQNSGYQSGSRFTARFRQHYGLLPKHVR 262
                 8999*************.88*******************.78********************************9987 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.1e-05     0.063       5      40 ..     177     211 ..     175     213 .. 0.92
   2 !   21.0   0.0   8.9e-08   0.00027       1      35 [.     224     256 ..     224     259 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
                 CSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHH CS
    HTH_AraC   5 lstnltiediAdelgfSrsyFsrlFkketGmtPsqy 40 
                 +++ +++ ++A +l + +s+++r++++e  ++++q+
  CTQ27393.1 177 PAQAWSVSRVAKMLFLGESTLRRRLQQE-SQSFRQI 211
                 5788************************.9999986 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 8.9e-08
                 HHCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS CS
    HTH_AraC   1 LrenlstnltiediAdelgf.SrsyFsrlFkketGm 35 
                 L+   +t+  i++iA++ g+ S s F+ +F++ +G 
  CTQ27393.1 224 LQ---TTSRPIGEIAQNSGYqSGSRFTARFRQHYGL 256
                 56...88999************************95 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.74   2.2e+03       8      20 ..     122     134 ..     120     135 .. 0.84
   2 !   17.6   0.1     8e-07    0.0024       2      39 ..     165     202 ..     164     207 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.74
      HTH_23   8 lrillllaeGlsv 20 
                 +++l++++eGlsv
  CTQ27393.1 122 QSVLQAVREGLSV 134
                 5799999999997 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 8e-07
      HTH_23   2 asereRlrillllaeGlsvreIAreLgvsrrTvyrwlk 39 
                 +s++ R++i+l  a+ +sv+++A++L   ++T++r l+
  CTQ27393.1 165 LSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQ 202
                 5899******************************9876 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   2.2e-06    0.0065      17      41 ..     179     203 ..     178     203 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.2e-06
                 TTT-HHHHHHHHTS-HHHHHHHHHH CS
       HTH_8  17 tgGnkskAArlLGisRrtLyrKLkk 41 
                 + + +s++A++L ++ +tL+r+L++
  CTQ27393.1 179 QAWSVSRVAKMLFLGESTLRRRLQQ 203
                 579********************96 PP

>> AraC_N  AraC-type transcriptional regulator N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   9.9e-06      0.03      20      60 ..      29      69 ..      16     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.9e-06
      AraC_N 20 vyepslcivlqGkKrvhlgdeafeydpgeylvvsvdlpvei 60
                + +p+lc v +G+K+++ g+ ++  +p++ +v+++d+++e+
  CTQ27393.1 29 LFSPALCRVKRGSKVIVQGESRVLATPQQLIVLPADVELEV 69
                5689*******************************998654 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.3   3.9e+03      18      30 ..     122     134 ..     120     135 .. 0.81
   2 ?   11.3   0.1   5.7e-05      0.17       6      49 ..     159     202 ..     156     204 .. 0.83
   3 ?    2.4   0.2     0.036   1.1e+02       9      18 ..     243     252 ..     240     255 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.3
  HTH_Tnp_ISL3  18 ayilelllesrsv 30 
                   + +l++++e+ sv
    CTQ27393.1 122 QSVLQAVREGLSV 134
                   7899999999887 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 5.7e-05
  HTH_Tnp_ISL3   6 arrrsriTlrleayilelllesrsvkavArqlgvSwtTVwrild 49 
                   ++r +  +   ++ i+ +  +  sv+ vA++l ++++T++r+l 
    CTQ27393.1 159 VERQQNLSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQ 202
                   67777777777888888777778******************997 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.036
  HTH_Tnp_ISL3   9 rsriTlrlea 18 
                   +sr+T r+++
    CTQ27393.1 243 GSRFTARFRQ 252
                   89******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2173.48
//
Query:       CTQ27394.1  [L=93]
Description: acylphosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-24   85.7   0.0    2.4e-24   85.5   0.0    1.0  1  Acylphosphatase  Acylphosphatase


Domain annotation for each model (and alignments):
>> Acylphosphatase  Acylphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.0   1.3e-28   2.4e-24       3      85 .]       8      91 ..       6      91 .. 0.94

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 1.3e-28
  Acylphosphatase  3 llvtGrVQgvgFRkfvrrlAkelglkGyvrNlsdgsVeivaegeeekvekfleelksgppk.arvdeveveeleeeeefkdFei 85
                     ++v+G VQgvgFR+ ++r+A +lg++Gy+rNl+dg Ve+++ ge e+vek++++lk+g p+ arvd+v +e+ + +   ++F+i
       CTQ27394.1  8 AWVYGSVQGVGFRYSTQREALQLGVTGYARNLDDGGVEVLVCGEAEQVEKLIAWLKAGGPRsARVDRVLTEPHQPTRSWDKFAI 91
                     579******************************************************88888********99888888899987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 832.61
//
Query:       CTQ27395.1  [L=109]
Description: subunit of enzyme for 2-thio modification of mnm5s2U of tRNA anticodon U [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-46  155.5   0.0      6e-46  155.4   0.0    1.0  1  DsrC            DsrC like protein
  ------ inclusion threshold ------
       0.15   10.6   0.0       0.15   10.6   0.0    1.2  1  Staph_opine_DH  Staphylopine dehydrogenase


Domain annotation for each model (and alignments):
>> DsrC  DsrC like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   0.0   6.6e-50     6e-46       2     107 .]       4     109 .]       3     109 .] 0.99

  Alignments for each domain:
  == domain 1  score: 155.4 bits;  conditional E-value: 6.6e-50
        DsrC   2 vngkeieldeegfLkdledwseevaealakeegieLteehwevikflreyyeeygvapairklvkalkkelgeekgnskelyelFpkgpakqackiAGl 100
                 ++g+eie+d+eg+Lkd+++wse++ae++a++egi+L  ehwev++f+re+y e++++pair+lvka+++++geekgns++ly+lFpkgpakqa+kiAGl
  CTQ27395.1   4 FEGNEIETDSEGYLKDTTQWSEAMAEVIAAQEGITLAVEHWEVVRFVREFYLEFNTSPAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGL 102
                 5899*********************************************************************************************** PP

        DsrC 101 pkPtgCv 107
                 pkP +C+
  CTQ27395.1 103 PKPVKCI 109
                 ******8 PP

>> Staph_opine_DH  Staphylopine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.7e-05      0.15     216     249 ..      62      96 ..      15     104 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 1.7e-05
                     HHHSSHHHHHHHT-.SSS---BTTSBTTTSSB-HH CS
  Staph_opine_DH 216 plflnelsLkavfe.eekakkyvYklfPeGPitqa 249
                     ++ +   +++  f  e+ +++y+Y+lfP GP  qa
      CTQ27395.1  62 AIRMLVKAMANKFGeEKGNSRYLYRLFPKGPAKQA 96 
                     555555556666651556899**********8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 964.07
//
Query:       CTQ27396.1  [L=219]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-42  144.6  31.5    4.1e-42  144.4  31.5    1.0  1  Bax1-I    Inhibitor of apoptosis-promoting Bax1
  ------ inclusion threshold ------
      0.059   13.8   1.7        0.2   12.1   1.7    1.9  1  DUF2583   Protein of unknown function (DUF2583)


Domain annotation for each model (and alignments):
>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.4  31.5   4.6e-46   4.1e-42       2     207 .]      19     213 ..      18     213 .. 0.88

  Alignments for each domain:
  == domain 1  score: 144.4 bits;  conditional E-value: 4.6e-46
      Bax1-I   2 aflrkvYgllalgllltalvaavvlsspaqlflslhivlflvvilaplalvflslsaarlkkkssalalallllftlleGlslspillvyt....gaii 96 
                 ++lr++Y ll+l+l+++a++a++       ++l+l  + +++ +++  +l+f   +++++ +k++   ++  ++ft++ G++l+p+l++y     g++i
  CTQ27396.1  19 KVLRNTYFLLSLTLAFSAITATAS------TVLMLPSPGLILTLVGMYGLMF---LTYKTANKPT--GIISAFAFTGFLGYILGPMLNAYLsagmGDLI 106
                 79***************9999988......2333434444455555556666...5545554455..5******************************* PP

      Bax1-I  97 lqaflltaaifgglslyalttkrdlsglggflfagligliiaslvnlFlpssalelaisylgvllfsglilyDtqkiierageygeedailaalsLyld 195
                   a+ +ta++f+++s+y+ltt++d+s+lgg+l+ag+++++i +++nlFl+ +al+lais++++l+ sg il++t++ii+  g   ++  i a++sLy++
  CTQ27396.1 107 GLALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGVVVVLIGMVANLFLQLPALHLAISAVFILISSGAILFETSNIIR-GG-ETNY--IRATVSLYVS 201
                 ******************************************************************************6.44.4688..********** PP

      Bax1-I 196 finlFlslLril 207
                 ++n+F+slL+il
  CTQ27396.1 202 LYNIFVSLLSIL 213
                 **********97 PP

>> DUF2583  Protein of unknown function (DUF2583)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.7   2.2e-05       0.2       3      66 ..     128     187 ..     126     194 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.2e-05
     DUF2583   3 rkkalllGnvlmglGlllmvaslaysvlnqlpelelpellaeaallgifiGallWlaGarvgGr 66 
                 rk+ ++lG +lm+ G+++++++++ ++  qlp+l+l+    +a ++ i  Ga+l+ +   + G 
  CTQ27396.1 128 RKDMSFLGGMLMA-GVVVVLIGMVANLFLQLPALHLA---ISAVFILISSGAILFETSNIIRGG 187
                 889999***9996.999999***99********9986...444555677788888777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 1953.87
//
Query:       CTQ27397.1  [L=550]
Description: oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-89  299.0   8.2      6e-89  298.6   8.2    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.6   8.2   3.3e-93     6e-89       2     374 ..      83     461 ..      82     464 .. 0.94

  Alignments for each domain:
  == domain 1  score: 298.6 bits;  conditional E-value: 3.3e-93
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC..............TCTEEEEEEEETTEEEEEESSET CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee..............dqdikkveavddytvrftlkkpn 86 
                 ++p+LAe+ we ++D++ +tf+LR+g+++sDGt++tA+D+v+s++rl+ p tas+yas+  +              + +  +v+a++d+t+++tl++pn
  CTQ27397.1  83 IQPRLAER-WE-NKDNLLWTFHLRPGLTWSDGTAITAQDIVWSWQRLVSPATASPYASYPGNmhianareialgqkGPETLGVKALNDTTLQVTLTQPN 179
                 79******.56.***********************************************999************************************* PP

                 TTTTTHCHHHHHHHGCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCT CS
   SBP_bac_5  87 alfltllaavpasiakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaepppsd 185
                 a fl++la+++  +  k  ++  +++++ +e+ v++GPYkl +++ ++++v ern  Yw++    ++++++  i++++a ++  ++Geid+v  +p+++
  CTQ27397.1 180 AAFLAMLAHPSLVPIDKVLVERYADKWTRPEHIVTSGPYKLSQWVVNERLVAERNAKYWDNAHTVINKVTYLPISSEAADVNRYKAGEIDIVYTVPINQ 278
                 ***************99999999************************************99*************5555555555*************** PP

                 HCHHHHHTTEEEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHH.....SHHHHHHHHH CS
   SBP_bac_5 186 ieqlkeakglkvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpayka.....ydpekAkklL 279
                  +ql++++g ++   sp++ ++y+ fNt++ppf+d+rvR+Al++A+D++ i+ +vl+ +++pa  + +p + g   +++++  a       +++AkklL
  CTQ27397.1 279 FAQLQKTMGDQL-DVSPQLATYYYEFNTTRPPFNDARVRRALNMALDKDIIAGKVLGQGQRPAWLIGQPDIGGVTLNNPDY--AswpreKRIAEAKKLL 374
                 ************.******************************************99999999999888888876655554..33577789******** PP

                 HHTT-BCSSTSCEETCEEEEEEEEETTSHHHHHHHHHHHHHHHH.TTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTTC CS
   SBP_bac_5 280 keaGykdgdggglrekklkltlllasgspaekaiaeliqqqlkk.iGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsssg 374
                 ++aGy+ +          ++++ll+++s+ +++ia +  +++kk +G+++++++ +w +t l++++ ++fd++  +w ady d+ +fln+f ++ +
  CTQ27397.1 375 AQAGYDESHP--------LVFTLLYNTSESHQRIAIAASSMWKKnLGVEAKLQNQEW-KTMLDTMHTHNFDAVRYAWIADYDDAATFLNTFRTGDS 461
                 ********85........69999**********************************.*********************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 4563.41
//
Query:       CTQ27398.1  [L=381]
Description: putative protease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-56  189.7   0.0    7.6e-56  189.3   0.0    1.2  1  EAL       EAL domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.3   0.0   4.3e-60   7.6e-56       2     238 .]     125     360 ..     124     360 .. 0.96

  Alignments for each domain:
  == domain 1  score: 189.3 bits;  conditional E-value: 4.3e-60
                 HHHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCH.TT--EEEEEE--CHHCC- CS
         EAL   2 ealrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeq.ldadiklsinlspaslad 99 
                 e+lr a+ ++ +++yyQP v+ ktg+++g+e+l+rwq+++    sp+ef+plaer+gl+  l+r ++ q+ +++r +  + l+ ++++ +n+s + +  
  CTQ27398.1 125 EKLRYAITQGYIVPYYQPLVNGKTGEIYGVEILARWQNSTTPARSPAEFIPLAERTGLIIPLTRSLMAQVNAQMRPH-FSkLPDGFHIGLNISVSYINA 222
                 68999*************************************99****************************99996.454799*************** PP

                 CCHHHHHHHHH.HCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHC CS
         EAL 100 eefleelrell.kqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkal 197
                 ++f+++ ++      g + + L+leite+e l  ++a+  + l++L+++G++iald+fgtgys ls l++l +d+iK+d+s++ +++ ++ a +l++++
  CTQ27398.1 223 PTFIDDCLHYQrGFEGKAVK-LMLEITEQEPLLLNGAVV-DKLNTLHSRGFSIALDNFGTGYSGLSCLHELVFDYIKIDQSFVGRVTGEAPASKLLDCV 319
                 ********999667777777.********9999999999.*********************************************************** PP

                 HHHHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 198 ialakelgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 i++a+ l ++++aegVete+q + l++ +++l+QGy++ kp
  CTQ27398.1 320 IEMARTLSLRIIAEGVETEAQRDYLNRQNIHLLQGYYFWKP 360
                 **************************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 3266.94
//
Query:       CTQ27399.1  [L=62]
Description: Iron(III)-transport ATP-binding protein (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 539.07
//
Query:       CTQ27400.1  [L=321]
Description: putative dioxygenase subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-12   47.4   3.8    2.5e-12   46.5   3.8    1.4  1  Fer2           2Fe-2S iron-sulfur cluster binding domain
    7.1e-06   26.3   0.0      2e-05   24.8   0.0    1.7  2  FAD_binding_6  Oxidoreductase FAD-binding domain
    1.8e-05   24.9   0.2     0.0043   17.2   0.0    2.9  3  NAD_binding_6  Ferric reductase NAD binding domain
    6.2e-05   23.6   0.1       0.03   15.0   0.0    2.7  2  NAD_binding_1  Oxidoreductase NAD-binding domain
  ------ inclusion threshold ------
      0.042   13.9   0.8      0.096   12.7   0.8    1.6  1  Fer2_3         2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   3.8   7.1e-16   2.5e-12       6      77 ..     242     312 ..     238     313 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 7.1e-16
                 EEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE.CTTSSSSTHHHHHTTEEEEGGGSEE CS
        Fer2   6 kevevevadgettlldaaeenggidipysCggggCgtClvevlegev.qsdetelegeeldegklrlaCqtiv 77 
                 +++e++v+++ t +l++ e+n+   ++ +C++g CgtC +++lege  ++d+ + e+e+ ++++ +l C++++
  CTQ27400.1 242 SGREFTVPQDMT-ILQVIENNKAAKVECLCREGVCGTCETMILEGEAdHRDQYYSEEEK-ASQQSMLICCSRA 312
                 688999999999.**********************************999999999886.788888****997 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   5.7e-09     2e-05       2      94 ..       9     103 ..       8     107 .. 0.88
   2 ?   -2.4   0.0       1.8   6.3e+03      27      41 ..     185     199 ..     168     208 .. 0.66

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 5.7e-09
                    EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--...TT-HHHHHH.HCS-TT-EEEEEEE CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvy...pgGkmsqaL.delkigdtleikGP 93 
                    +++ ++e++++ +++f++  p+ +    +  G+h++++++  ++++  +Y+++ss+ ++  +++ v+     +gG  s  + +++++gdtl+++ P
     CTQ27400.1   9 AVVRDVEQITPLVKRFTLVSPTGAPLPAFSGGSHIIVQMQDGEQRYSNAYSLMSSPLDTTSWQIAVRLEspsKGG--SRFMhQRVRPGDTLTVSTP 102
                    678999**********************************8888899*********************9753333..6666567*********999 PP

                    E CS
  FAD_binding_6  94 l 94 
                     
     CTQ27400.1 103 N 103
                    6 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
                    -----TT-EEEEEEC CS
  FAD_binding_6  27 klglpvGqhvflrlk 41 
                      +l +G hv+ + +
     CTQ27400.1 185 FADLEPGTHVYTCGP 199
                    446777888877665 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-06    0.0043       5      27 ..     116     138 ..     113     161 .. 0.88
   2 ?    4.3   0.0     0.011        40     135     154 ..     190     209 ..     167     211 .. 0.76
   3 ?   -1.8   0.1      0.83     3e+03     110     142 ..     278     309 ..     248     314 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-06
                    xxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   5 llvagGiGitpfisilkdllkks 27 
                    ll+agGiGitpf+s++ +l +++
     CTQ27400.1 116 LLIAGGIGITPFLSHIPELEQRQ 138
                    79**************9987766 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.011
                    xxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 135 ssvgvfvCGppklvkevkkl 154
                      + v++CGp++l++ vk +
     CTQ27400.1 190 PGTHVYTCGPAALNEAVKAA 209
                    55679**********99976 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.83
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 110 rnvkihfgRPnlkevlkdiaskhknssvgvfvC 142
                      ++i +g  ++++++ ++ +++ +++  +++C
     CTQ27400.1 278 CETMILEGEADHRDQYYSE-EEKASQQSMLICC 309
                    3567777777777777766.4555555555565 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.4e-06      0.03       1     107 [.     117     206 ..     117     208 .. 0.62
   2 ?   -3.4   0.0       4.4   1.6e+04      30      46 ..     282     298 ..     272     305 .. 0.54

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.4e-06
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    +iagG Gi+P++s + ++ ++   +    l y+    ++ ++ + l+++  + + +++v a       g+   +  +  +l  +l    +++thvy
     CTQ27400.1 117 LIAGGIGITPFLSHIPELEQR---QADWQLHYCFHDADSNAFVDTLRAAPWRDRVNVHVSAL------GS---RLDLP-RLFADL----EPGTHVY 195
                    79***********99999997...56788888888888777777777663333333333222......11...22222.222333....4477777 PP

                    EECSHHHHHHH CS
  NAD_binding_1  97 vCGppgMikav 107
                     CGp ++ +av
     CTQ27400.1 196 TCGPAALNEAV 206
                    77777777766 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.4
                    EEEEESSGCGSTTHHHH CS
  NAD_binding_1  30 lvyGnrteedllyreel 46 
                    ++ G    +d +y+ee 
     CTQ27400.1 282 ILEGEADHRDQYYSEEE 298
                    44444445555555554 PP

>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.8   2.7e-05     0.096      33      66 ..     253     285 ..     240     309 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.7e-05
      Fer2_3  33 daLlkikeevdptlafrasCregiCGscavai.nG 66 
                  +L+ i+++   +   ++ Creg+CG+c  +i +G
  CTQ27400.1 253 TILQVIENNKAAK--VECLCREGVCGTCETMIlEG 285
                 4455555555444..5789*********6655155 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2736.24
//
Query:       CTQ27401.1  [L=482]
Description: succinate-semialdehyde dehydrogenase I, NADP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-171  571.6   0.7   1.1e-171  571.4   0.7    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
       0.15   11.9   0.0       0.25   11.1   0.0    1.3  1  PqiA      Paraquat-inducible protein A


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  571.4   0.7  1.3e-175  1.1e-171       1     461 [.      19     477 ..      19     478 .. 0.99

  Alignments for each domain:
  == domain 1  score: 571.4 bits;  conditional E-value: 1.3e-175
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlr 98 
                 w+++++ +t++v nP+tg +++++p+++++++++av+aA++a ++w++ +a++Ra++L+++++l+ e+k  la+++t+e+Gkplaea++e+++a+++++
  CTQ27401.1  19 WRDAADgTTLAVSNPSTGATLGQIPNMGRAEAQQAVDAAAAALPGWRAFTAAQRAALLKNWHRLILENKTALAQIMTAEQGKPLAEAEGEIAYAASFIE 117
                 788888466****************************************************************************************** PP

                 HHHHHHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCH CS
      Aldedh  99 yyaelaeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsev 196
                 ++ae+ ++ +ge++ps  ++k+ +v r+ +Gv++aItPWNfP++++++k+ palaaG+t+v+KPa+etp++al++ael+++ag+P+gv+nvvtg+ +e+
  CTQ27401.1 118 WFAEQGKRANGEIIPSpGADKRLMVIRQGVGVCAAITPWNFPAAMITRKAGPALAAGCTMVIKPANETPFTALAMAELANQAGIPQGVINVVTGQSREI 216
                 ****************77********************************************************************************* PP

                 HHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT CS
      Aldedh 197 gealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakk 295
                 g+ ++ +++v+k+sftGstevgr +++++a+++k+++lElGG++p+iv++daD+dkave+++ + f+naGQ+C++++r+++++ +yd+f +k+v+++++
  CTQ27401.1 217 GAVFTGDERVRKLSFTGSTEVGRVLMRQCAESIKKLSLELGGNAPFIVFDDADIDKAVEGALIAKFRNAGQTCVCVNRFYIHRAVYDQFCDKFVARVAA 315
                 *************************************************************************************************** PP

                 --BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSS CS
      Aldedh 296 lkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdte 394
                 lkvgd+ ++d+++GPli++++ +kv++++++a ++ga+ll+Gg   +a++  g+f++Ptv+ +v+p + ++qeEiFGPV++++kf+de+++ie aN+t 
  CTQ27401.1 316 LKVGDGSESDVQIGPLINAEAGRKVQSLLDDALSRGATLLTGG---KAHPLGGNFFTPTVIGDVQPGSLLLQEEIFGPVAALVKFDDEQQVIEQANNTI 411
                 *******************************************...88999************************************************ PP

                 EESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEE CS
      Aldedh 395 yGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevkt 461
                 yGLa++ +++d +r+ rv+e+le+G+v+iN+   +++ a pfgGvkqSglGreg+++g+e+y+e+k 
  CTQ27401.1 412 YGLASYFYSNDAARIWRVSEQLEYGMVGINTGLISNEVA-PFGGVKQSGLGREGSEHGIEDYLEMKY 477
                 ************************************999.************************995 PP

>> PqiA  Paraquat-inducible protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.8e-05      0.25       6      56 ..     170     220 ..     166     222 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.8e-05
        PqiA   6 alalaalillipAnllpimslsllgstseatllsgvlalweegswlvAllv 56 
                 ala  + +++ pAn  p+  l ++   ++a + +gv+ +++ +s  +++++
  CTQ27401.1 170 ALAAGCTMVIKPANETPFTALAMAELANQAGIPQGVINVVTGQSREIGAVF 220
                 889999999***********************************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.35
# Mc/sec: 4085.33
//
Query:       CTQ27402.1  [L=374]
Description: putative 2Fe-2S cluster-containing dioxygenase subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-22   80.8   1.0    2.1e-21   76.9   1.0    2.1  1  Ring_hydroxyl_A  Ring hydroxylating alpha subunit (catalytic 
    1.6e-20   72.8   0.1    2.7e-20   72.1   0.1    1.3  1  Rieske           Rieske [2Fe-2S] domain
  ------ inclusion threshold ------
       0.03   14.2   0.0      0.055   13.4   0.0    1.4  1  Rieske_2         Rieske-like [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> Ring_hydroxyl_A  Ring hydroxylating alpha subunit (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   1.0   3.5e-25   2.1e-21       3     211 ..     184     371 ..     182     373 .. 0.75

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 3.5e-25
                      HHHGGGHHHHHESS-HHHHHHHHHHCCCCCTTTHHHHHHCS-TTS---EEEEE-SSSS-EEEEEES-THHHHHHHHHHHHHHHHSHHHHHHH.G CS
  Ring_hydroxyl_A   3 ellrvaaetldikaNWKlaaEnflEsYHvpvlHpellrallpeeletaeaaeyagfgphgsgsyvgqpgdlrlepaaavreldaeaaapele.g 95 
                      +l+ +a++t   +aNWK +++n+lE+YH++++Hp  + +++ ++               ++ +             ++ +   + a  +e++ +
       CTQ27402.1 184 DLKLAARFTTLTPANWKNIVDNYLECYHCGPAHPGFSDSVQVDRY--------------WHTM------------HGKWTLQYGFAKPSEQSfK 251
                      678889999999***********************8444444333..............3333............2333233333333333325 PP

                      CHHHHCEEEEEEEETTTEEEE..T..TTTEEEEEEESSTT-EEEEEEEEEETT..S-HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHHTTSTT CS
  Ring_hydroxyl_A  96 ledeqdrgalhftifPnlsillap..dhvvifrviPtgpettevelealvppdataseelkeelaavvdrtfgvveeeDaelceevQqglrsrg 187
                       e+ +d     f+++P ++++++p  +++++   +P ++ett  + ++++  ++     l ++ +a  ++ ++v+  eD  l+e vQ+gl+srg
       CTQ27402.1 252 FEEGTDAAFHGFWLWPCTMFNVTPikGMMTVIYEFPVDEETTLQNYDIYFTNEE-----LTDDQKALIEWYRDVFRPEDLRLVESVQKGLKSRG 340
                      566666666779*********99833445555558****************994.....444445555555456999***************** PP

                      T.SBSCCC......SCSSHHHHHHHHHHHHH CS
  Ring_hydroxyl_A 188 y.epgpvl......srqEeavrhFhewvrdr 211
                      y  +g+++      + +E ++ hFh+ v++ 
       CTQ27402.1 341 YrGQGRIMadnsgsGISEHGIAHFHNLVAQV 371
                      *98888778*****************98875 PP

>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.1   4.6e-24   2.7e-20       1      88 [.      46     134 ..      46     135 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 4.6e-24
                 CEEEEEEGGGC-.TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEETTSBEEE-TTHHHEEEE CS
      Rieske   1 swvavakesdvp.egdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwaydadGkvikgPaprplaty 88 
                 sw++va+ s+v  ++d+ t +++ge++v++r +d+ ++A+ +vC+Hrg +l +g+++ k+v++Cp+H wa++ dG++ ++  ++++a++
  CTQ27402.1  46 SWICVAHGSEVArPNDYITREIIGENIVIVRGRDNILRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDGNLAHARNCENVANF 134
                 69*************************************************999998888***********************999987 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.3e-06     0.055       1      83 [.      46     124 ..      46     149 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.3e-06
                 SEEEEEECCCS-TTB-.EEEEETTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS CS
    Rieske_2   1 ewvpvckledlvketg.vaalvdgkqvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecle 83 
                 +w+ v++ +++++ +  ++  + g++++++r +++ + A  n++p  + + ls    g+ k + v+++P +   f+L+ G+  +
  CTQ27402.1  46 SWICVAHGSEVARPNDyITREIIGENIVIVRGRDNILRAFYNVCPHRGHQLLS----GEGKAKNVITCPYHAWAFKLD-GNLAH 124
                 59999999999877665888899***********************9999998....57778899***********94.55554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 3246.20
//
Query:       CTQ27403.1  [L=535]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-114  382.8  41.0   2.2e-114  382.6  41.0    1.0  1  BCCT      BCCT, betaine/carnitine/choline family transporter
  ------ inclusion threshold ------
        0.1   12.5   0.4       0.82    9.6   0.1    2.6  2  DUF1980   Domain of unknown function (DUF1980)


Domain annotation for each model (and alignments):
>> BCCT  BCCT, betaine/carnitine/choline family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.6  41.0  2.5e-118  2.2e-114       2     485 .]      13     499 ..      12     499 .. 0.98

  Alignments for each domain:
  == domain 1  score: 382.6 bits;  conditional E-value: 2.5e-118
        BCCT   2 flvslliivlfvllalvfpealeevlsslnswilekfgwlylllvllflvfllvlafskygkikLGkddekpefstlsWfamlfaaglgigllfwgvaE 100
                 +++sl++iv++++ + +fp++ +++++s+++ +++ +g   ++lvll l ++l+la skyg+i+LG+   k e+stlsW+ m  +aglg + l+wgvaE
  CTQ27403.1  13 IAISLAAIVFIAATLSLFPQQTAQAADSIFNGVTRLLGSTVQVLVLLALGLVLYLATSKYGNIRLGE--GKVEYSTLSWLFMFICAGLGSSTLYWGVAE 109
                 57999*************************************************************6..99**************************** PP

        BCCT 101 plahylspppgaeagteeaaqeAlaytffhwGlhaWaiyalvalalayfayr.kglpltissalypllgeringllgkvvDvlavlatvfGvatslGlg 198
                 + ++y++p ++ ++++++a++ ++ y+ffhwG++aWa+y+l+ l++ay +++ k++ l++s ++  + g + +g++g++vD+++++atv  ++ sl + 
  CTQ27403.1 110 WAYYYQTPGLNIAPQSPKALEYSIPYSFFHWGVSAWATYTLASLIMAYHFHVrKNKGLSLSGIVSAITGVNPQGFWGRLVDLMFLIATVGALTISLVVT 208
                 *******99999************************************999858888****************************************** PP

        BCCT 199 vlqinaglselfgieesltvqlaiivvitalatvsavsGldkGikrlSnlnlvlalllllfvllvGptlfilntfvqslgdylqnlvalslatdaaeea 297
                 + +++ gls+l+g+++++tvq+++i++  +++++s + G+++G++rlS++  + a+ll l+vllvGpt fi n++++++g   qn++++sl td+ ++ 
  CTQ27403.1 209 AATFTRGLSALTGLPDNFTVQAFVILLSGGIFCMSSWIGINNGLQRLSKMVGWGAFLLPLVVLLVGPTEFITNNIINAVGLTTQNFLQMSLFTDPLGDG 307
                 *************************************************************************************************99 PP

        BCCT 298 eewlasWTvFyWawwiawapfvGlFiAriSrGRtiRefilgvllvptlvtflwftvlGgtaielelegeaelaea.aeasveaalfalleqlplgsils 395
                 + + ++WTvFyW wwi+++p v++F+ r+SrGR i+e+i g+ll  t+ ++++f v+ ++a+++  +g  ++ ++ +  + e+a+ ++l +lp g+++ 
  CTQ27403.1 308 A-FTRNWTVFYWLWWISYTPGVAMFVTRVSRGRKIKEVIWGLLLGSTAGCWFFFGVMESYAMHQFVNGVINVPQVmQILGGETAVQQVLMSLPAGKLFL 405
                 9.************************************************************************9888999****************** PP

        BCCT 396 vlavvliiiffvTsaDSatlvlatltsgg...denpprkqrvfWgvllgavaavlllagg.lealqsasiiaalPftlvlllmvvsllkalree 485
                 ++ ++++i+f+++ +D+ ++++a++++++    e+p r +r+fW+v+++++ + +l++g  le+++++++++alPf+++ll+    ++++l+++
  CTQ27403.1 406 AAYLFVMIVFLASHMDAVAYTMAATSTRNlreGEDPDRGMRLFWCVVITLIPLSILFTGAsLETMKTTVVLTALPFLAILLIKTGGFVRWLKQD 499
                 ***************************9988889************************766**************************9999875 PP

>> DUF1980  Domain of unknown function (DUF1980)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   9.2e-05      0.82      67     107 ..     253     293 ..     222     308 .. 0.74
   2 ?   -1.2   0.0      0.18   1.6e+03      31      63 ..     470     511 ..     468     519 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 9.2e-05
     DUF1980  67 sfikkllsylilviPlllglllptkvldssiakakGfnfsl 107
                 ++++k++    +++Pl+++l+ pt++++ +i +a G ++++
  CTQ27403.1 253 QRLSKMVGWGAFLLPLVVLLVGPTEFITNNIINAVGLTTQN 293
                 56899**************************9999988776 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.18
     DUF1980  31 yapllyfamvvllilalvq...liraqkkk......ecghdH 63 
                 +++ +++++  +l + l++   ++r+ k++      ++  +H
  CTQ27403.1 470 MKTTVVLTALPFLAILLIKtggFVRWLKQDyahvpvHQIETH 511
                 666777777777777777778899999999664444333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       875  (0.0488036); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3783.07
//
Query:       CTQ27404.1  [L=65]
Description: hypothetical protein CH1034_180091 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   14.5   3.2      0.057   13.7   3.2    1.4  1  Myotoxins  Myotoxin, crotamine


Domain annotation for each model (and alignments):
>> Myotoxins  Myotoxin, crotamine
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   3.2   3.2e-06     0.057       4      22 ..      41      60 ..      34      64 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.2e-06
   Myotoxins  4 ChkkeGhCfPkeki.ClPPs 22
                Ch+ +GhCf +  i  lPP+
  CTQ27404.1 41 CHQPGGHCFHRRYIkSLPPA 60
                9*********9998569997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 522.73
//
Query:       CTQ27405.1  [L=361]
Description: putative tartrate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-87  292.0   0.0    7.3e-87  291.7   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.7   0.0   4.1e-91   7.3e-87       2     348 .]       7     355 ..       6     355 .. 0.94

  Alignments for each domain:
  == domain 1  score: 291.7 bits;  conditional E-value: 4.1e-91
                 EEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE--.-THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CS..SSSSSHHHHHHHHHHHTTEEEE CS
      Iso_dh   2 iallegdgiGpevveaalkvlkaakekaglelefeevd.vGgaaidetgeplpeetleaikeadvvllgavgtpk..ekevrpengLlaLrkeldlfan 97 
                 ia ++gdgiG+ev+++ ++vl+aa+++ +l+l+fe+++ ++ +++ ++g+++p++  e+++  d++ +gavg p+  + +++   +Ll+ r+e+d ++n
  CTQ27405.1   7 IAAIPGDGIGKEVLPEGIRVLQAAAQRWDLSLSFEQMEwASCEYYAHHGKMMPDDWREQLQGFDAIYFGAVGWPDtvPDHISLWGSLLKFRREFDQYVN 105
                 999*********************************9934567889999**************************96666666669************* PP

                 EEEEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHHHH.H CS
      Iso_dh  98 lrpvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlksse.l 195
                 lrpv++f   +v++pl  + ++++d+ +vRe+t+g Y++    +++  +++ev+++  ++++++++ri r+afelA++r++k++t+ +K+n l+ s   
  CTQ27405.1 106 LRPVRLF--PGVPCPLAGKKAGDIDFYVVRENTEGEYSALGGRANEG-TEHEVVIQESVFTRRGVDRILRYAFELAQSRPRKTLTSATKSNGLAISMpY 201
                 *******..57777777777999****************99999886.799**********************************************9* PP

                 HHHHHHHHHCCTTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEET..SS-EEEEESS---CCCTTSS-S-THH CS
      Iso_dh 196 wrkiveevaeeeypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslge..kkvaifEavHGsapdiagkdkaNpia 292
                 w + vee+a+ +yp+i+ ++q +D  +++ v +p++fdV+v +NlfGDilSD+  a +G +G++pSa+l++  +   +fE+vHGsapdi gk++aNpia
  CTQ27405.1 202 WDERVEEMAK-NYPEIRWDKQHIDILCARFVLQPERFDVVVGSNLFGDILSDLGPACTGTIGIAPSANLNPdrNFPSLFEPVHGSAPDIYGKNIANPIA 299
                 **********.************************************************************877789********************** PP

                 HHHHHHHHHHHTTT-HHHH.....HHHHHHHHHHHHHTSCCHHHCTTSTCCCHHHHHHHHH CS
      Iso_dh 293 vilSaalmLryslgleeaA.....dkiekAvekvleagivTkDlageaakevstsefgdav 348
                 ++ + a+mL + lg  ++      d i +A+e++++ g +T D++g+a    st+++ da+
  CTQ27405.1 300 TVWAGAMMLDF-LGNGDERyhaahDGILAAIEQTIACGPKTPDMKGSA----STQQVSDAI 355
                 ***********.98877655557899*********************9....999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2772.42
//
Query:       CTQ27406.1  [L=313]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-38  130.8   3.1    5.9e-38  130.3   3.1    1.2  1  LysR_substrate  LysR substrate binding domain
    5.6e-17   61.4   1.0      1e-16   60.6   1.0    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.036   14.0   0.2       0.11   12.4   0.1    1.9  2  MarR_2          MarR family
      0.051   13.4   0.1       0.11   12.4   0.1    1.5  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   3.1   1.3e-41   5.9e-38       2     207 ..      91     294 ..      90     296 .. 0.96

  Alignments for each domain:
  == domain 1  score: 130.3 bits;  conditional E-value: 1.3e-41
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                     + ++g+Lri  +  ++r++++p+l++++ +yP++el+  + d  +l+dl++eg +Dl ir g+   ++l+ar+La +++vl+asp+  Lar++p 
      CTQ27406.1  91 QVPQGTLRIISSFGFGRRVVAPALSALALQYPQLELRFDVQD--RLVDLVNEG-VDLDIRVGDDIAPNLIARQLAANHRVLCASPQF-LARHAPP 181
                     679***************************************..*********.********************************9.***7777 PP

                     .CGGGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEE CS
  LysR_substrate  97 .sledLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyr 188
                      +l+dLa +p+++ +e  +    ++l    +++ +k+++ l++n+ e + ++++ G Gial + + vr+ +a+g lv  +lp++  p+++++vy 
      CTQ27406.1 182 kQLSDLAALPCLVIKERDHpfGVWQLHSKEGQHAIKVTGPLSSNHGEIVHQWCLDGQGIALRSWWDVRENIASGHLV-QVLPDYWQPANVWAVYV 275
                     7*************766666999******************************************************.*****7777******** PP

                     TTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidflrea 207
                     ++   s+++r+ ++flr  
      CTQ27406.1 276 SRLATSAKIRTTVEFLRHY 294
                     ****************976 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   1.0   2.3e-20     1e-16       1      60 []       7      66 ..       7      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 2.3e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l++lr+f  va+   f++AAeeLg+s++ vs++++ LE+ l+v L++Rt+r+++ Te+Ge
  CTQ27406.1  7 LNDLRVFMLVARRAGFAAAAEELGVSPAFVSKRVSLLEQTLNVMLLHRTTRRVTITEEGE 66
                799********************************************************7 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.5e-05      0.11       7      47 ..       9      45 ..       3      46 .. 0.85
   2 ?   -3.5   0.0       2.3     1e+04      13      28 ..     174     188 ..     174     189 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.5e-05
                HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2  7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLva 47
                ++rv + ++rr g     ++ a++lg+s++ vs+++  L++
  CTQ27406.1  9 DLRVFMLVARRAG----FAAAAEELGVSPAFVSKRVSLLEQ 45
                6788888888887....7889***************99985 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.3
                 HHHCTTTSEEEHHHHH CS
      MarR_2  13 aLgrrpgrdltvgela 28 
                 +L+r+ +++   ++la
  CTQ27406.1 174 FLARHAPPK-QLSDLA 188
                 678888875.667776 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.4e-05      0.11      17      42 .]      19      44 ..      16      44 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.4e-05
  HTH_AsnC-type 17 RisyaeLAervGlSestvlrRvrrLe 42
                   R+ +a+ Ae++G+S++ v +Rv  Le
     CTQ27406.1 19 RAGFAAAAEELGVSPAFVSKRVSLLE 44
                   8999*****************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2475.90
//
Query:       CTQ27407.1  [L=426]
Description: gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-57  193.2   0.2    1.1e-56  193.0   0.2    1.0  1  DAO             FAD dependent oxidoreductase
    3.1e-05   23.3   0.2    5.1e-05   22.6   0.2    1.4  1  Thi4            Thi4 family
    6.8e-05   22.3   0.8    0.00011   21.5   0.8    1.3  1  FAD_binding_3   FAD binding domain
    8.8e-05   21.9   0.1    0.00017   21.0   0.1    1.4  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00019   20.8   1.1      0.067   12.4   0.3    2.2  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    0.00028   21.0   2.4     0.0011   19.1   2.3    2.1  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00052   19.2   2.1      0.001   18.2   2.1    1.4  1  FAD_binding_2   FAD binding domain
    0.00064   19.1   0.2       0.36   10.1   0.1    2.2  2  Amino_oxidase   Flavin containing amine oxidoreductase
     0.0019   18.7   0.2     0.0042   17.6   0.2    1.7  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0023   17.3   0.0     0.0031   16.9   0.0    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
     0.0033   16.6   0.3     0.0061   15.7   0.3    1.4  1  GIDA            Glucose inhibited division protein A
     0.0071   15.1   0.5      0.042   12.5   0.2    2.0  2  HI0933_like     HI0933-like protein
     0.0074   15.9   1.2      0.012   15.2   1.2    1.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
  ------ inclusion threshold ------
      0.042   12.9   2.2       0.23   10.4   0.4    2.1  2  Lycopene_cycl   Lycopene cyclase protein
      0.044   13.1   0.1      0.077   12.3   0.1    1.3  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.069   13.6   0.0       0.16   12.4   0.0    1.6  1  NAD_binding_7   Putative NAD(P)-binding
      0.091   12.4   0.2         15    5.2   0.0    2.2  2  ApbA            Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.0   0.2     1e-59   1.1e-56       1     352 []      29     381 ..      29     381 .. 0.86

  Alignments for each domain:
  == domain 1  score: 193.0 bits;  conditional E-value: 1e-59
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS.........STHHSTHHHH.HHHHHHHHHHHHHHHHHSSTTSEEEEEEE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl.........rylpeasela.rlslealeelreleeelgididyrrtGll 87 
                 dv+++GGG++Gls A++La+ g  V++le + ++g gaSgrn+g+l  ++          y p+a +++  +++e+ + +re  +++ i++dyr +G l
  CTQ27407.1  29 DVCVVGGGYTGLSSALHLAEMGydVVVLEGA-RIGFGASGRNGGQLVNSYsrdidviekNYGPDAAKMLgSMMFEGGDIIRERIQRYQIQCDYR-PGGL 125
                 9*******************9**********.9999**********999999999999866777666666***********************9.8888 PP

                 EEESSHHHHHHHHHHHHHHHHTTTTE.EEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEE CS
         DAO  88 slaadeeelealdkllallleaglda.elldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgvert 185
                 ++a ++++le l+++ a+++++g    elld+e +r +e  +++++gal+++++g+++p  l+ + a+a++ +G++++e+++vt++++++   + v   
  CTQ27407.1 126 FVAMNHKQLETLEEQKANWERYGNTQlELLDREAIR-REVDSDRYVGALLDHSGGHIHPLNLAIGEADAIRLNGGRVYEQSPVTRIQHTS--PAVV--S 219
                 8888999******99999*989985559****9555.5544679******************************************8864..3444..5 PP

                 CT.EEEEEEEEEEE--GGGHH.HHHTT.CTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE.EEETTTTEEEEEETTSEEEEEESSEEETTCSSTSC CS
         DAO 186 tp.gendaadavVnaaGawsd.llgll.keldlpispvrgqvlvlkplseklvspaailpvpe.tdddgrgvyvtprkdgrvlvGgtadeesgdddpev 280
                 t+ g++ +a++v++a +a+ + +   l +el ++ +p+  qv++++plse+  ++ +i  ++   d +    y++ + d+r+l Gg         + + 
  CTQ27407.1 220 TArGQV-TARYVIVAGNAYLGdK---LePELAKRSMPCGTQVVTTAPLSEEV-ARSLIPKNYCvEDCNYLLDYYRLTGDNRLLYGGGV--V----YGAR 307
                 555876.56**********6554...4455555559************9954.4546666666899999999************9965..3....3456 PP

                 SHHHHHH.HHHHHHHHSGGG..CGEEEEEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHHH CS
         DAO 281 deedide.llealrklfPql..gdvlrkwaGlrp.lpdglpligetpgvkglylatGhsghGltlapatGkllael 352
                 d++d+++ ++++l k fPql   ++ ++w+G    + +++p +g+    +++y+  G+sghG+t+  ++G+l++el
  CTQ27407.1 308 DPDDVERlIMPKLLKTFPQLqgVKIDYRWTGNFLlTLSRMPQFGRL--DNNIYYMQGYSGHGVTCTHLAGRLISEL 381
                 677777779**********96677889****555258********5..68***********************986 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.2   4.8e-08   5.1e-05      15      65 ..      25      75 ..      15     102 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.8e-08
                HTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEE.SSSS--TTTTTTSTTBS CS
        Thi4 15 yaesDvvivGaGssGLtaayylakkpdlkvaile.rsvspGGGawlGGqlfs 65
                 ++ Dv +vG+G +GL++a  la+  +  v++le +++ +G     GGql +
  CTQ27407.1 25 SINCDVCVVGGGYTGLSSALHLAEM-GYDVVVLEgARIGFGASGRNGGQLVN 75
                5789*********************.*******96699***99999**9976 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.8   1.1e-07   0.00011       2      31 ..      28      57 ..      27      65 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.1e-07
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlve 31
                   +dV++VG+G +Gl++al L+e G +vv++e
     CTQ27407.1 28 CDVCVVGGGYTGLSSALHLAEMGYDVVVLE 57
                   9***************************98 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   1.6e-07   0.00017     143     175 ..      28      60 ..       3      83 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.6e-07
                  SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgkevtlveard 175
                   +++vvGgGy+G+  A +la++g++v+++e + 
   CTQ27407.1  28 CDVCVVGGGYTGLSSALHLAEMGYDVVVLEGAR 60 
                  578999999999999999999999999988754 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.3   6.3e-05     0.067       2      33 ..      32      62 ..      31      66 .. 0.94
   2 !    6.9   0.0    0.0031       3.3      98     132 ..     201     234 ..     192     241 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.3e-05
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkgnig 33
                 ++G+G  Gl++a++l ++g  d+++lE ++ig
   CTQ27407.1 32 VVGGGYTGLSSALHLAEMGY-DVVVLEGARIG 62
                 8*******************.8*****99887 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0031
  Pyr_redox_3  98 iklfeeVesvkkedegfevetsketyeAkkviiAt 132
                  + +++ V++++++ +  +v+t +++++A++vi+A 
   CTQ27407.1 201 VYEQSPVTRIQHT-SPAVVSTARGQVTARYVIVAG 234
                  6677889999876.4689***************96 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   2.3   1.1e-06    0.0011       1      33 [.      32      63 ..      32      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.1e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGG 33
                   +vG+G +Gl+ A +La+ g+dv++le + r+G 
     CTQ27407.1 32 VVGGGYTGLSSALHLAEMGYDVVVLEGA-RIGF 63
                   8************************865.6664 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   2.1   9.7e-07     0.001       1      31 [.      29      59 ..      29      74 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.7e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavveke 31
                   Dv V+G+G  GL++Al +ae G +v+v+e +
     CTQ27407.1 29 DVCVVGGGYTGLSSALHLAEMGYDVVVLEGA 59
                   99**************************975 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00034      0.36       2      22 ..      38      58 ..      37      80 .. 0.93
   2 !    7.2   0.0    0.0025       2.6     218     265 ..     192     239 ..     135     261 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00034
                   HHHHHHHHHHHTTEEEEEEES CS
  Amino_oxidase  2 aGLaaArqLlsaGfdVtvlEa 22
                   +GL+ A +L++ G+dV+vlE+
     CTQ27407.1 38 TGLSSALHLAEMGYDVVVLEG 58
                   8*******************6 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0025
                    H..TTTTEEEETSEEEEEEEE.ETTCEEEEETTSTEEEESEEEE-S-HHHH CS
  Amino_oxidase 218 e..elrgldirlntrVkeikr.egdgvtvtledgevveaDaVvvTvplgvl 265
                    +  +l g+++   ++V++i++ ++    v +  g+v +a++V+v+   +  
     CTQ27407.1 192 DaiRLNGGRVYEQSPVTRIQHtSPAV--VSTARGQV-TARYVIVAGNAYLG 239
                    1557899**************33333..43445555.********987755 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2     4e-06    0.0042       2      30 ..      30      58 ..      29      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4e-06
                EEEECSSHHHHHHHHHHHHTTSEEEEEES CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvver 30
                v vvGgGy+gl  A  lae+g +V v+e 
  CTQ27407.1 30 VCVVGGGYTGLSSALHLAEMGYDVVVLEG 58
                78**********************99985 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.9e-06    0.0031       1      41 [.      29      76 ..      29     167 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.9e-06
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLve.......ergvlGGlltsg 41
                  Dv+VvGGg  G+  A+  a++G  v+++e        +g+ GG+l + 
    CTQ27407.1 29 DVCVVGGGYTGLSSALHLAEMGYDVVVLEgarigfgASGRNGGQLVNS 76
                  9**************************995444444445555555555 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.3   5.8e-06    0.0061       1      28 [.      29      56 ..      29      80 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.8e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi 28
                dv V+GgG  G+  Al++a++G++v+ +
  CTQ27407.1 29 DVCVVGGGYTGLSSALHLAEMGYDVVVL 56
                79***********************987 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.2     4e-05     0.042       2      32 ..      29      59 ..      28     101 .. 0.89
   2 ?    0.3   0.0      0.21   2.2e+02     119     164 ..     194     234 ..     191     260 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 dv v+GgG  Gl  A+++a+ g +V++le a
   CTQ27407.1 29 DVCVVGGGYTGLSSALHLAEMGYDVVVLEGA 59
                 89**************************987 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.21
                  HHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 119 lkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                  ++ +g +++ ++ v+++++++     v+t  +++++a+++++A  G
   CTQ27407.1 194 IRLNGGRVYEQSPVTRIQHTSPA--VVST-ARGQVTARYVIVA--G 234
                  66788899999******765555..8888.89**********9..4 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.2   1.1e-05     0.012       3      29 ..      30      56 ..      28      59 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
                    EEEE--STTHHHHHHHHHHCTSEEEEE CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigv 29
                    ++v+G GY Gl +a+ lae+g +v+++
      CTQ27407.1 30 VCVVGGGYTGLSSALHLAEMGYDVVVL 56
                    9***********************985 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00022      0.23       1      33 [.      29      59 ..      29      65 .. 0.92
   2 ?    1.9   0.1     0.087        91     100     143 ..     198     238 ..     190     259 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00022
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieas 33
                   Dv v+G+G  gls A +l  a++g  vv++e++
     CTQ27407.1 29 DVCVVGGGYTGLSSALHL--AEMGYDVVVLEGA 59
                   9*****************..999999*999875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.087
  Lycopene_cycl 100 ngvklleakvesveeeeageslvvleggrkirarlvvdarglas 143
                    +g+ + ++ v+++++ +     vv  +  ++ ar v++a  +  
     CTQ27407.1 198 GGRVYEQSPVTRIQHTSP---AVVSTARGQVTARYVIVAGNAYL 238
                    7889999******99988...556666669********987554 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   7.3e-05     0.077      22      58 ..      21      57 ..       9      86 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.3e-05
                 EETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEE CS
  AlaDh_PNT_C 22 gvpgvepakvlviGgGvaGlqAiatakglgakVtvlD 58
                 +++g  ++ v v+GgG  Gl+++   +++g +V+vl+
   CTQ27407.1 21 TLEGSINCDVCVVGGGYTGLSSALHLAEMGYDVVVLE 57
                 44555569*************************9987 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00015      0.16       9      39 ..      29      59 ..      26     114 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvape 39
                    v+vvGgG  +++ + +l+e g +v+v+  +
     CTQ27407.1 29 DVCVVGGGYTGLSSALHLAEMGYDVVVLEGA 59
                   79*************************8765 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2     0.017        18       1      33 [.      30      63 ..      30      93 .. 0.80
   2 ?    5.2   0.0     0.014        15      12      79 ..     169     237 ..     168     260 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.017
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rl 33
                ++++G G  G   a +La+ g+dv+++   r  +
  CTQ27407.1 30 VCVVGGGYTGLSSALHLAEMGYDVVVLEGARiGF 63
                68**********************9987766555 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.014
                 HHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETT..CEEEEEECEEECCHSCCCCS-ESEEEE-SSGG CS
        ApbA  12 llaakLakagadvtlilrsr.rlealkknGlrltseg..geeilrppealsaeekselepidlvivtvKay 79 
                 +++a L + g +++ ++    +++a++ nG r+++ +  +  +   p+++s++  + +  + +viv+  ay
  CTQ27407.1 169 YVGALLDHSGGHIHPLNLAIgEADAIRLNGGRVYEQSpvTRIQHTSPAVVSTA--RGQVTARYVIVAGNAY 237
                 8999999999999999999999***************7655555566666666..7788999999986666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3087.24
//
Query:       CTQ27408.1  [L=495]
Description: gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     6e-172  572.3   0.0   6.8e-172  572.1   0.0    1.0  1  Aldedh        Aldehyde dehydrogenase family
     0.0078   15.8   0.0      0.012   15.2   0.0    1.2  1  MMS19_N       Dos2-interacting transcription regulator of RNA
  ------ inclusion threshold ------
       0.12   11.5   0.0       0.23   10.5   0.0    1.4  1  LuxC          Acyl-CoA reductase (LuxC)
       0.26   11.6   2.2       0.45   10.9   2.2    1.4  1  Endotoxin_C2  Delta endotoxin


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  572.1   0.0  1.5e-175  6.8e-172       5     462 .]      33     489 ..      28     489 .. 0.97

  Alignments for each domain:
  == domain 1  score: 572.1 bits;  conditional E-value: 1.5e-175
                 SSSEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH..HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHH CS
      Aldedh   5 esetievinPatgeviakvpaataedvdaavaaAkeafk..awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryy 100
                 +++t+e+i+Pa ++++a+v++++++dv++av+aA++af+   w++ ++++R++iL ++adl+e+++eela letl+tGkp++++ + +++ a++ +r+y
  CTQ27408.1  33 DNTTFETIDPAAQQTLAQVARGKKADVERAVKAARQAFDngDWSQASPAQRKAILTRFADLMEAHREELALLETLDTGKPIRHSLRdDIPGAARAIRWY 131
                 3467***********************************888******************************************999************ PP

                 HHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHH CS
      Aldedh 101 aelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgea 199
                 ae+++k++gev+p+ +++la+++reP+Gv++a++PWNfPllla+wkl palaaGN+v+lKP+e++pl+al+la l++eaglP+gvlnvv+g g+e+g+a
  CTQ27408.1 132 AEALDKVYGEVAPTGSNELAMIVREPIGVIAAVVPWNFPLLLACWKLGPALAAGNSVILKPSEKSPLTALRLAGLAKEAGLPDGVLNVVSGFGHEAGQA 230
                 **************77*********************************************************************************** PP

                 HHH-TTESEEEEES-HHHHHHHHHHHH.CTTSEEEEEE---EEEEE-TTS.HHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT- CS
      Aldedh 200 lvehpevdkvsftGstevgrkiakaaa.knlkrvtlElGGknplivleda.DldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakkl 296
                 l+ hp+v++++ftGst++g++++k a+ +n+krv lE GGk+++iv++d+ Dl++av+a++ g+f+n+GQvCia++rll++esi+def+++l+++a+ +
  CTQ27408.1 231 LALHPDVEVITFTGSTRTGKQLLKDAGdSNMKRVWLEAGGKSANIVFADCpDLQQAVRATAGGIFYNQGQVCIAGTRLLLEESIADEFLARLKAEAQHW 329
                 *************************8779********************************************************************** PP

                 -BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSE CS
      Aldedh 297 kvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdtey 395
                 + g+pld+dt++G li++ ++++v++++  ++++  +l l+g    +++   + v Pt++ +v+p +++ +eEiFGPVl+v++fk+eeea+++aNd++y
  CTQ27408.1 330 QPGNPLDPDTTMGMLIDNTHADNVHSFIRGGESQS-TLFLDG----RKNPWPAAVGPTIFVDVDPASTLSREEIFGPVLVVTRFKSEEEALKLANDSDY 423
                 *******************************9987.677777....3567889********************************************** PP

                 ESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 396 GLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 GL+a+v+t+dl+ra+r+++rl+aG+v +N++++g++   pfgG+kqSg+Gr+++ ++le++te+kt+
  CTQ27408.1 424 GLGAAVWTRDLSRAHRMSRRLKAGSVFVNNYNDGDMTV-PFGGYKQSGNGRDKSLHALEKFTELKTI 489
                 **************************************.**************************96 PP

>> MMS19_N  Dos2-interacting transcription regulator of RNA-Pol-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.7e-06     0.012      58     118 ..      42     102 ..      27     116 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.7e-06
     MMS19_N  58 kealkgllaLlrlkkfsaeeavevlralfeevhvqslaqadRklvyelldallekhrealk 118
                 ++a + l++++r kk++ e+av+ +r+ f++ ++++ + a+Rk++++ +  l+e hre+l 
  CTQ27408.1  42 PAAQQTLAQVARGKKADVERAVKAARQAFDNGDWSQASPAQRKAILTRFADLMEAHREELA 102
                 456678888999999*******************************************995 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.1e-05      0.23      87     263 ..     155     325 ..     145     340 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.1e-05
        LuxC  87 aqprglvlhvlsgNvpl.lpvmsilqglLvknvnllkvSssdpflaaallksladvdenhtladslsvvyfksgdtkleeeivqnaDvvvawGgeeaik 184
                 + p g++  v++ N pl l+ + +  +l ++n  +lk+S  +p +a +l+   ++      +++ +s      ++   +  +  ++ v+   G+  + k
  CTQ27408.1 155 REPIGVIAAVVPWNFPLlLACWKLGPALAAGNSVILKPSEKSPLTALRLAGLAKEAGLPDGVLNVVSGFG---HEAGQALALHPDVEVITFTGSTRTGK 250
                 679999**********73689**************************99988888887766666666553...33333334445778888899999999 PP

        LuxC 185 aise...klkpgkqlikfGakvSfavvdkealeeealdkaaeraAkDiivfdQqAClspqvvfvekddkieidefaeaLaaa 263
                  + +     + +  +++ G k    v+  +     +l++a+++ A  i     q C++   +++e+     +def  +L a+
  CTQ27408.1 251 QLLKdagDSNMKRVWLEAGGKSANIVFADCP----DLQQAVRATAGGIFYNQGQVCIAGTRLLLEE---SIADEFLARLKAE 325
                 9988322233455688899999999999999....9999999999998655559999999999994...4788888888665 PP

>> Endotoxin_C2  Delta endotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.2    0.0001      0.45      12      63 .]      21      72 ..      10      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
  Endotoxin_C2 12 aLFtdnnptkikdtttqaaId.aAqalVdkvtdstkKaeLqadidkAqelLda 63
                   LF + ++ + +d+tt ++Id aAq++  +v+ + kKa+ +  ++ A++ +d+
    CTQ27408.1 21 RLFINGEYCAAADNTTFETIDpAAQQTLAQVARG-KKADVERAVKAARQAFDN 72
                  59*******************6678888888766.79***********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 4001.05
//
Query:       CTQ27409.1  [L=185]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-17   60.8   0.1    1.1e-16   60.2   0.1    1.3  1  Cupin_2         Cupin domain
    2.1e-14   53.3   0.4    3.2e-14   52.7   0.4    1.3  1  HTH_3           Helix-turn-helix
    2.6e-10   40.5   0.1    4.4e-10   39.8   0.1    1.2  1  HTH_31          Helix-turn-helix domain
    1.1e-08   34.9   0.0    1.8e-08   34.3   0.0    1.3  1  HTH_19          Helix-turn-helix domain
    9.7e-05   22.5   0.0    0.00016   21.7   0.0    1.3  1  MqsA_antitoxin  Antitoxin component of bacterial toxin-antito
    0.00018   21.4   0.2    0.00033   20.6   0.2    1.4  1  AraC_binding    AraC-like ligand binding domain
    0.00025   20.9   0.3    0.00091   19.1   0.3    1.9  2  HTH_37          Helix-turn-helix domain
     0.0056   17.1   0.0      0.012   16.1   0.0    1.5  1  HTH_26          Cro/C1-type HTH DNA-binding domain
  ------ inclusion threshold ------
      0.016   15.1   0.1      0.024   14.5   0.1    1.3  1  HTH_25          Helix-turn-helix domain
       0.11   13.4   0.0       0.15   12.9   0.0    1.3  1  Histone_HNS     H-NS histone family
       0.14   11.9   0.0       0.21   11.3   0.0    1.3  1  Cupin_3         Protein of unknown function (DUF861)


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.1     7e-20   1.1e-16       2      69 ..     111     178 ..     110     180 .. 0.94

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 7e-20
                 EEEEETTE.EEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEE CS
     Cupin_2   2 lvelppGe.sapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllv 69 
                 +++++pG+ ++++  H+ge e++ +leGe++lt++g+ ++l aG+s+ +++g pH f Nt+ + +r+++
  CTQ27409.1 111 FETYQPGTtTGERIKHQGE-EIGTILEGEIVLTINGQSYHLVAGQSYAINTGIPHSFSNTSAGICRIIS 178
                 579*****8888888****.*****************************************99999987 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.4   1.9e-17   3.2e-14       2      55 .]      13      66 ..      12      66 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 1.9e-17
                HHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHHH CS
       HTH_3  2 kelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsldel 55
                 e+R+qlglsq+ +Ae++G++ s+is iE ++ +P ++tl+kl+k++g+sl+e+
  CTQ27409.1 13 SEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEF 66
                699************************************************997 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   2.7e-13   4.4e-10       3      60 ..       9      65 ..       9      66 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 2.7e-13
      HTH_31  3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60
                G +L + R++ GLsq+ +Ae++g++ s +s +Eq +   p  ++l +l+ ++gl+ +e
  CTQ27409.1  9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKV-SPAISTLQKLLKVYGLSLSE 65
                789999*******************************.6***************9876 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.1e-11   1.8e-08       1      61 [.       9      68 ..       9      72 .. 0.96

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 1.1e-11
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllq 61
                G+rL e+R +lgl+q+  ae  g + s is iE +k   p +++l+k+++ +g++l ++++
  CTQ27409.1  9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKV-SPAISTLQKLLKVYGLSLSEFFS 68
                89*********************************98.999****************9997 PP

>> MqsA_antitoxin  Antitoxin component of bacterial toxin-antitoxin system, MqsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0     1e-07   0.00016      71     119 ..       9      58 ..       3      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1e-07
  MqsA_antitoxin  71 pafiarvrkkleldqreaaeifGgGvnafsryekGkvrpplalv.kllkl 119
                     ++ + ++r++l+l+qr aae+ G    a s  e+ kv p ++++ kllk+
      CTQ27409.1   9 GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLqKLLKV 58 
                     567889*********************************99876267776 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.2     2e-07   0.00033      19      64 ..     124     169 ..     110     176 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2e-07
                   ETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE- CS
  AraC_binding  19 hvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesd 64 
                     h+  +i+ ++eG+  l++ng+ y+l +G+   ++ g pH++   
    CTQ27409.1 124 IKHQGEEIGTILEGEIVLTINGQSYHLVAGQSYAINTGIPHSFSNT 169
                   579999************************************9765 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   5.6e-07   0.00091      22      57 ..      11      46 ..       7      64 .. 0.80
   2 ?   -1.9   0.0         2   3.3e+03      34      49 ..     104     119 ..      96     128 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.6e-07
                HHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--T CS
      HTH_37 22 aiaeliekrelsqseaaqllgiaqPkvsrllrgkls 57
                ++ e++++++lsq+ aa+l g +++ +s +++ k+s
  CTQ27409.1 11 RLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVS 46
                58899**************************87776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
                 HHHHHHHHT--HHHHH CS
      HTH_37  34 qseaaqllgiaqPkvs 49 
                  + +a+++++ qP  +
  CTQ27409.1 104 NRTLAMIFETYQPGTT 119
                 6789999999999866 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   7.2e-06     0.012       1      58 [.      11      67 ..      11      70 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.2e-06
      HTH_26  1 kLrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLl 58
                +L+e+ ++ g+++ + a+ +g++ + +s++ ++k+ ++ ++tL+k+ ++ g ++++ +
  CTQ27409.1 11 RLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKV-SPAISTLQKLLKVYGLSLSEFF 67
                68888888899999999*****************6.*****************99876 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.5e-05     0.024       1      36 [.      11      46 ..      11      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT--T CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEeddfd 36
                rL + R+++gls + +a+   +  + +  +E+d+++
  CTQ27409.1 11 RLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVS 46
                6999*****************************765 PP

>> Histone_HNS  H-NS histone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.5e-05      0.15      12      53 ..      36      77 ..      21     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.5e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXX----SSS-----EEEEE CS
  Histone_HNS 12 qeealeaeerkealaeirelaaeyGltleelaaeakkakkkk 53
                 ++++ e+ + + a++++++l++ yGl+l+e+++e +k  + +
   CTQ27409.1 36 AISTIEQDKVSPAISTLQKLLKVYGLSLSEFFSEPEKPDEPQ 77
                 56778999999********************99987776655 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013      0.21      14      57 ..     118     159 ..     109     176 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                 EECEEEEECESSEEEEEEEECEEEEEETTTEEEEEETTEEEEE- CS
     Cupin_3  14 ctpGkfrltyeedEfcyileGevkvtpeggetvelraGDlvvlp 57 
                 +t G+ r + + +E+ +ileGe+ +t  +g+ ++l aG +  + 
  CTQ27409.1 118 TTTGE-RIKHQGEEIGTILEGEIVLTI-NGQSYHLVAGQSYAIN 159
                 45555.7788889**************.********99876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1468.46
//
Query:       CTQ27410.1  [L=254]
Description: gamma-Glu-GABA hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-70  236.8   0.0    2.4e-70  236.6   0.0    1.0  1  Peptidase_C26  Peptidase C26
    5.4e-14   52.4   0.0    1.1e-13   51.5   0.0    1.5  1  GATase         Glutamine amidotransferase class-I


Domain annotation for each model (and alignments):
>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.6   0.0   2.7e-74   2.4e-70       1     216 []       8     224 ..       8     224 .. 0.96

  Alignments for each domain:
  == domain 1  score: 236.6 bits;  conditional E-value: 2.7e-74
  Peptidase_C26   1 pvigitaneeslkkeavqdaeesylaasyveavekagglpvllpiee.deedvkaildkldgllltGgq.dvePslygeepsekeeeadpeRdale 94 
                    pvig+++++++lk +++q+ +e+yl+a     + +agglp+ lp+   ++e ++a++dkldg++l+G++ +v+P+lyge+   +e +adp+Rd l+
     CTQ27410.1   8 PVIGVVMCRNRLKGHQTQTLQEKYLNA-----IVNAGGLPIALPHALaEPELLNAVVDKLDGIYLPGSPsNVQPHLYGEN--GDEPDADPGRDLLS 96 
                    9********999999999999999998.....************976599******************************..9999********** PP

  Peptidase_C26  95 laLiraalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhrehe......qsaashavkvekgsllaellg.seeievnslHhqaikelae 183
                    +aLi+aaler++Pi++iCrGlq+l va+GGtly+++ eq++l +hre+       q+a+sh+v+v++g+ll++l+  ++++ vnslH q+ k+l++
     CTQ27410.1  97 MALINAALERRIPIFAICRGLQELVVATGGTLYRRLFEQPELLEHREDPelpveqQYAPSHQVEVQEGGLLSQLIPgCNTFWVNSLHGQGAKTLSP 192
                    ************************************************97887766******************977******************* PP

  Peptidase_C26 184 elrveAvaeDgviEaieseeakafvlgvQwHPE 216
                    +lrveA+a+Dg++Ea+++++++ f+lgvQwHPE
     CTQ27410.1 193 QLRVEARAPDGLVEAVSVNDHP-FALGVQWHPE 224
                    ********************88.*********9 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   1.2e-17   1.1e-13      59     189 ..      95     242 ..      33     243 .. 0.71

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 1.2e-17
                 THHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEE....................EEECEEEEEEEEEEEETTT......CGGTTTTSEEEEEEEEEEE CS
      GATase  59 gkieaikearenkiPiLGICLGmQllaiefgrkvv....................kekekehhggtmrlgddet......allyglknevierhrHrye 131
                  ++++i+ a+e++iPi+ IC G+Q l+ + g++++                    +    ++   ++      +      +ll++l +  ++    ++ 
  CTQ27410.1  95 LSMALINAALERRIPIFAICRGLQELVVATGGTLYrrlfeqpellehredpelpvE----QQYAPSH------QvevqegGLLSQLIPGCNTFWVNSLH 183
                 578899**************************888888877777766555533222....2222223......13333345666666666666666666 PP

                 EESGCHHHTTEEEEEEEETTEEEEEEEEETTT.EEEESSBTTSTTSTTH.HHHHHHHHHH CS
      GATase 132 vnpkelepaglevtakseddeelmeiiekknp.fvgvQFHPEststpeg.pellfnflik 189
                  + +++++ +l+v a+  d+  ++++  ++ p + gvQ+HPE  s++   +++lf+++i 
  CTQ27410.1 184 GQGAKTLSPQLRVEARAPDG-LVEAVSVNDHPfALGVQWHPEWNSSEYAlSRMLFDGFIT 242
                 665566*******9999877.5666666666*9**********99998635789999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2059.69
//
Query:       CTQ27411.1  [L=473]
Description: gamma-Glu-putrescine synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.4e-100  335.0   0.0   5.4e-100  334.7   0.0    1.1  1  Gln-synt_C    Glutamine synthetase, catalytic domain
    0.00045   20.0   0.0     0.0012   18.7   0.0    1.8  2  Gln-synt_N_2  Glutamine synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.7   0.0  6.1e-104  5.4e-100       2     344 ..     134     468 ..     133     469 .. 0.97

  Alignments for each domain:
  == domain 1  score: 334.7 bits;  conditional E-value: 6.1e-104
                 T-HHHHHHHHHHHHHHTTCEEEEEEEEEEEEESEECCCESSEEEEEEE.TB...B.TSS-TTBHCCCCCTCCHHHHHHHHHHHTT--EECCEEECCCTE CS
  Gln-synt_C   2 rdPRsvlkralarlaeeGltvvvgpElEFflfdkeedkeasksllevdseekgrpaekggyfsvapvdeaedlrreivealealgieveashhEvatgQ 100
                 ++PR+vl+r +++l+++Gl +vv++ElEF+l+d+++d  a++ l+++ ++ + +++++++++sv+++++++d++++i e ++ + i+++ + +E  +gQ
  CTQ27411.1 134 VEPRNVLNRLWQQLRQRGLFPVVAVELEFYLLDRKRD--AEGYLQPPCAPGTDDRNTQSQVYSVDNLNHFADVLNDIDELAKLQLIPADGAVAEASPGQ 230
                 58***********************************..569********************************************************* PP

                 EEEEE.--EECHHHHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTTS---BEEEEEEEEECTTEESSB-TTSGGGB-HHHHHHHHHHHHHHHHHHHHHS- CS
  Gln-synt_C 101 vEinl.kfadalkaaDnvvtfKrvvkevArkhgltatFmpKplegdnGsgmHvhlSlwdkdgknlfadeddeyalselarhfigGllkhakaltaltap 198
                 +Einl +++++l+a+D+++ +Kr+v+ +A+kh ++atFm+Kp+e+++GsgmH+h+S+ +++g+n++ d d+  + s+l++ +++G+++ ++a++al+ap
  CTQ27411.1 231 FEINLhHTDNVLDACDDALALKRLVRLMAEKHKMHATFMAKPYEEHAGSGMHIHISMLNNKGENVLVDGDG--EDSALLKRALAGMIDLMPASMALLAP 327
                 *****6678899*********************************************************95..6************************* PP

                 SCCHHHHCSSSTTSSSBEEEESS-TTCSEEEE-TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHHT.T--------S-SSSS-TTTHTSS-B--SS CS
  Gln-synt_C 199 tvnSYkRlvpgyeaPvalawgarNRsallRipaskekakrvElRlpdasaNPYLalAallaAgldGien.klepgepvekdlyelspeerkgieelPas 296
                 +vnSY+R++pg++ P+ ++wg++NR+++lRip+++++++rvE+R+++a+aNPYL++Aa++a+ l+G++n +l ++e+ve++  e++          P +
  CTQ27411.1 328 NVNSYRRFQPGMYVPTQASWGHNNRTVALRIPCGERQNHRVEYRVAGADANPYLVMAAIFAGILHGLDNpQLPLQEEVEGNGLEQEGL------PFPIR 420
                 *******************************************************************7758999*********99996......59*** PP

                 HHHHHHHHHCSHHHCCSS-HHHHHHHHHHHHHCHHHHHCT--HHHHHH CS
  Gln-synt_C 297 leeAlealeedellkevlgeevieaylalkraEleeleeevsdweler 344
                  ++Al ++ ++++l+e lge++++ + a+k++El ++e+ ++++e+++
  CTQ27411.1 421 QSDALWEFMQNDHLRERLGERFCHVFHACKHDELLQFERLITETEIDW 468
                 *********************************************987 PP

>> Gln-synt_N_2  Glutamine synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.3e-07    0.0012      14     107 .]      36     132 ..      25     132 .. 0.81
   2 ?   -3.7   0.0       1.2   1.1e+04      36      56 ..     304     324 ..     294     326 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.3e-07
                   ---EEEEEEE-TTS-EEEEEEEGGGHHHHHTT-EEE-GGGGG--TTS---TT-S-SS.S--..EEEEE-GGG-EEE---SSTTS.EEEEEE-TTS-B CS
  Gln-synt_N_2  14 qveLieflyvdlaGvtrGkalplasLeekLasGiGltkatlalserdlidevedlgp.vGe..lrLvpdPasavalpyaPdaaa.llgdlvevdgtP 106
                   +++ ++ l +dl+G  rGk +p a L  kL +G+ +  +  a+  +  + e + lg  +Ge     +p P +       P+  a +   +v+ dg+P
    CTQ27411.1  36 DTQYVDVLLTDLNGCFRGKRIPVAGLS-KLEKGCYFPASVFAMDILGNVVEEAGLGQeMGEpdRSCIPVPGTLTPSAADPQSIAqVQLTMVDEDGAP 131
                   578899********************6.8*********9*****99999999998853675214578888888888888876553667778888887 PP

                   - CS
  Gln-synt_N_2 107 y 107
                   +
    CTQ27411.1 132 F 132
                   6 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.2
                   GGGHHHHHTT-EEE-GGGGG- CS
  Gln-synt_N_2  36 lasLeekLasGiGltkatlal 56 
                    a L+  La  i l++a +al
    CTQ27411.1 304 SALLKRALAGMIDLMPASMAL 324
                   567788888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3428.19
//
Query:       CTQ27412.1  [L=463]
Description: putrescine importer [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-41  142.1  35.1    2.5e-41  141.8  35.1    1.1  1  AA_permease    Amino acid permease
    2.4e-31  109.0  38.9    2.9e-31  108.7  38.9    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8  35.1   2.8e-45   2.5e-41       2     436 ..      27     429 ..      26     442 .. 0.85

  Alignments for each domain:
  == domain 1  score: 141.8 bits;  conditional E-value: 2.8e-45
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  v+++ l+ +++ ++f   g ++s ++ + +  +ylla + ++++++s g ++  +p++g++ytya+++++p++Gf++G++ l+ +++  ++ +  a i
   CTQ27412.1  27 VVMMGLAYLTPMTVFDTFG-IVSGISNGHVPASYLLALAGVLFTAISYGKLVRQFPEAGSAYTYAQKSISPHVGFMVGWSSLLDYLFLPMINVLLAKI 123
                  7888888888877764444.344555556799****************************************************************** PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeega 197
                  +++ +  ++++p  wv+++ f+++l++ nl +v + + + +++ l+ i +++ f+i+ + +l +g++        ++ + +     ++++        
   CTQ27412.1 124 YLSAL--FPEVP-PWVWVVTFVAILTAANLKSVNLVANFNTLFVLVQISIMVVFVILVVQGLHKGEGVGT----VWSLQPF-----ISQN------AH 203
                  *****..*****.********************************************9766666665555....4544444.....4444......55 PP

  AA_permease 198 fknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplinav 295
                  +  +i ++ iv f+f G+ +v+++++E+ d ++ iPkai  + ++ +i+++ +++++ l +p+       d+a +      +  + g +++++++ ++
   CTQ27412.1 204 LIPIITGATIVCFSFLGFDAVTTLSEETPDAARVIPKAIFLTAMYGGIIFIVASFFMQLFFPDIHRFKDPDAALP-----EIALYVGGKLFQSIFLCT 296
                  899***********************************************************8886666655655.....777899************ PP

  AA_permease 296 iltaalssansslysasRvlyslakdglaP..kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsyl..r 389
                  +++++l s+++s +s sR+ly + +d+++P   ++ ++ k++ P+  ++++ i++l al+ + +++          a+  + +l+ +++++ls     
   CTQ27412.1 297 TFVNTLASGLASHASVSRLLYVMGRDNVFPerIFGYVHPKWRTPALNVIMVGIVALSALFFDLVTAT---------ALINFGALVAFTFVNLSVFnhF 385
                  *******************************44555568***********99999988877777777.........6666666666666666666534 PP

  AA_permease 390 fRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyaylt 436
                  +R++  y++ + ++l +   llp+   l++ +l+i l +++l++ l 
   CTQ27412.1 386 WRRK-GYNKTWKDRLHYL--LLPMVGALTVGVLWINLEATSLTLGLV 429
                  7777.9****99999885..688888888888888887777776665 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7  38.9   3.3e-35   2.9e-31       3     397 ..      24     414 ..      22     440 .. 0.77

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 3.3e-35
  AA_permease_2   3 llsafalvigsv.....igsgifvknlaasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvla 93 
                    l++++++ +  +     + ++++v++ + +g   +   + +a +++    ++ y  l   +p  g +y+y+++ +++ v+f+++w+++++y++ l+
     CTQ27412.1  24 LWQVVMMGLAYLtpmtvFDTFGIVSG-ISNGHVPASYLLALAGVLF---TAISYGKLVRQFPEAGSAYTYAQKSISPHVGFMVGWSSLLDYLF-LP 114
                    56666666655555443335555553.3332222222233333333...56778899777*******************************98.9* PP

  AA_permease_2  94 silsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwpg 189
                     i++++a+ +l+al+p++ ++ w + +     ++++++ n+++++ +a++++  +++ i  ++++++il++  +++g      t +  +++ + ++
     CTQ27412.1 115 MINVLLAKIYLSALFPEVPPWVWVVTF-----VAILTAANLKSVNLVANFNTLFVLVQI-SIMVVFVILVVQGLHKGEGVG--TVW--SLQPFISQ 200
                    ******************999887776.....788999*************99999999.566666655555554444432..223..22223333 PP

  AA_permease_2 190 v......llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpd.deianlsnlgsvaalffeavggkvvaiiv 276
                    +      + g +iv++sf Gf++++  see +   + +pkaif+ +++ ++++++ +++++   pd   ++ ++     +   +  vggk +++i+
     CTQ27412.1 201 NahlipiITGATIVCFSFLGFDAVTTLSEETPDaaRVIPKAIFLTAMYGGIIFIVASFFMQLFFPDiHRFKDPDAA---LPEIALYVGGKLFQSIF 293
                    2233344999********************9987688*****************************4445766663...33344445889999999 PP

  AA_permease_2 277 vilialsllgaintavigssrvlealardgvlP.rffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigal 370
                       +++  l ++++  +++sr+l+ ++rd+v+P r f  v+ k+ +p   +i + iv+ + +l+f      ++ + +++ ++g+++ ++++ ++++
     CTQ27412.1 294 LCTTFVNTLASGLASHASVSRLLYVMGRDNVFPeRIFGYVHpKWRTPALNVIMVGIVA-LSALFF------DLVTATALINFGALVAFTFVNLSVF 382
                    9999999999***********************************************9.555444......5789********************* PP

  AA_permease_2 371 ilrkkrphlkrpgk.....ilvaiigalfllf 397
                     + ++r+ +++ +k      l+ ++gal++ +
     CTQ27412.1 383 NHFWRRKGYNKTWKdrlhyLLLPMVGALTVGV 414
                    *********88555577763333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3400.08
//
Query:       CTQ27413.1  [L=40]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.028   14.2   0.1      0.028   14.2   0.1    1.1  1  LapA_dom  Lipopolysaccharide assembly protein A domain
       0.18   11.5   0.3       0.17   11.6   0.3    1.0  1  DUF2981   Protein of unknown function (DUF2981)


Domain annotation for each model (and alignments):
>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   3.1e-06     0.028      19      49 ..       4      31 ..       2      40 .] 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-06
    LapA_dom 19 LsllllvafgiGallgwllslwsylrlrrel 49
                L+l +++++++G+ +  l+s++   + rr+ 
  CTQ27413.1  4 LILFIVAMALLGVAIYSLVSYL---KERRAS 31
                8999999999**9999999998...655553 PP

>> DUF2981  Protein of unknown function (DUF2981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   1.9e-05      0.17       2      26 ..       2      26 ..       1      33 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.9e-05
     DUF2981  2 nGlfviafqqlLlGvslYlvlhYLh 26
                +Gl++  +   LlGv++Y+++ YL+
  CTQ27413.1  2 SGLILFIVAMALLGVAIYSLVSYLK 26
                58888888889*************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 305.73
//
Query:       CTQ27414.1  [L=73]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 561.12
//
Query:       CTQ27415.1  [L=262]
Description: putative short-chain dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-41  141.5   0.0    2.8e-41  141.1   0.0    1.1  1  adh_short       short chain dehydrogenase
    9.9e-30  103.8   0.6    1.2e-29  103.5   0.6    1.1  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    4.9e-09   36.4   0.8    6.5e-09   35.9   0.8    1.2  1  KR              KR domain
     0.0029   17.1   0.1     0.0052   16.3   0.1    1.5  1  Epimerase       NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.027   14.4   0.2      0.043   13.7   0.2    1.4  1  NAD_binding_10  NAD(P)H-binding
       0.11   11.8   0.0       0.18   11.2   0.0    1.3  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   0.0   9.5e-45   2.8e-41       2     187 ..       7     192 ..       6     197 .. 0.96

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 9.5e-45
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 ++++tGassGIG  +a++la++G+++++++r+e++l+++a++l++  + +a ++++D+++++ +  +ve+  ++   +d+++nNAG ++ + f   + +
  CTQ27415.1   7 TAFITGASSGIGAIYAERLAARGYNLILAARREDRLQALADQLQARyAIQASILKADLSEEHGIA-AVEQRLQQDPAIDLFINNAGTAKLAGFLASTPR 104
                 799********************************************************888876.5666668889*********************** PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 e +++  +N t+++ l+ a+l a+  +++G+ +n++S+ ++  ++g a+YsAsKa v ++tr l++e+a++g+r++av P++++Td+ 
  CTQ27415.1 105 EHQAIHTLNTTALLRLSYAALAAFTPRRRGTLINIASILALHTLPGSAVYSASKAWVLSFTRGLQEEFADSGVRIQAVLPAATATDLW 192
                 *************************************************************************************986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.6     4e-33   1.2e-29       1     179 [.      12     192 ..      12     218 .. 0.89

  Alignments for each domain:
  == domain 1  score: 103.5 bits;  conditional E-value: 4e-33
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTT..SEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelg..aevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   Ga sgIG+  A++la++G++++l+ ++e++ ++ +++l++++   a++l++D ++e  ++a+ ++++++   +D ++nnag a+   + fl  +  e
    CTQ27415.1  12 GASSGIGAIYAERLAARGYNLILAARREDRlQALADQLQARYAiqASILKADLSEEHGIAAVEQRLQQD-PAIDLFINNAGTAKL--AGFLASTPRE 105
                   899**************************9888888888887742336*******99999887777766.8**************..9********* PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGG CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaa 179
                    + ++  n+++l++l+ aal +++++  g ++n++s+ a  ++p+ ++y+a+Ka + ++tr l  e+++ g+R+ av p +++T+++
    CTQ27415.1 106 HQAIHTLNTTALLRLSYAALAAFTPRrrGTLINIASILALHTLPGSAVYSASKAWVLSFTRGLQEEFADSGVRIQAVLPAATATDLW 192
                   *********************7765557********************************************************985 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.8   2.2e-12   6.5e-09       3     164 ..       8     169 ..       6     183 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 2.2e-12
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                  +itG+  g+G   a+ la++g  +l+l +R+   +++ +al ++l+a+  ++ ++++aD+s+++ ++a+ ++++ ++p+i   i+ Ag+++ + +   
  CTQ27415.1   8 AFITGASSGIGAIYAERLAARGY-NLILAARR---EDRLQALADQLQARyAIQASILKADLSEEHGIAAVEQRLQ-QDPAIDLFINNAGTAKLAGFLAS 101
                 57********************6.79999999...46667799****99678***************98877776.778******************** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrr 164
                 t  + +++     +++  L  +       ++   ++ ++Si +l   +g a Y+a  a++ ++ +  +
  CTQ27415.1 102 TPREHQAIHTLNTTALLRLSYAALAaftpRRRGTLINIASILALHTLPGSAVYSASKAWVLSFTRGLQ 169
                 ***************99998654444444999************************999988876655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.7e-06    0.0052       2      76 ..       9      95 ..       8     141 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.7e-06
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HH...HHHHHHHHH.T-SEEEE--S.--- CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrs...alerlfkee.qpdavihlAa.vgg 76
                ++tGa+  iG+  +++l+++gy++i  +r++++ +  +l+d          ++ ++dl ++    a+e+ +++  ++d  i+ A+  + 
  CTQ27415.1  9 FITGASSGIGAIYAERLAARGYNLILAARREDRLQ--ALADQlqaryaiqaSILKADLSEEHgiaAVEQRLQQDpAIDLFINNAGtAKL 95
                79*********************999999944433..3333347999999999999*99998777888888888889999998874444 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   1.4e-05     0.043       1      49 [.      12      60 ..      12      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.4e-05
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCE.EEE--TT CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeegle.vvegdvt 49
                    GA+ ++G   +++l+ar g+++ + +R++++l++l+++ +++ +++++++
      CTQ27415.1 12 GASSGIGAIYAERLAAR-GYNLILAARREDRLQALADQLQARyAIQASIL 60
                    9****************.5**************99876444324444444 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     6e-05      0.18       1      77 [.       9      80 ..       9      94 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6e-05
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-S CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpd 77
                   +iTG +  iG+  ae+L ++gy+ +   rr++      +++la++ ++++  + ++ k+Dl++++ +  + ++ q d
     CTQ27415.1  9 FITGASSGIGAIYAERLAARGYNLILAARREDR-----LQALADQLQARYAIQASILKADLSEEHGIAAVEQRLQQD 80
                   59**********************998888765.....55555555556667899********99999888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2038.52
//
Query:       CTQ27416.1  [L=149]
Description: Transcriptional regulator, HxlR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-20   73.1   0.0      2e-20   72.4   0.0    1.3  1  HxlR      HxlR-like helix-turn-helix
  ------ inclusion threshold ------
      0.063   13.3   0.0      0.095   12.7   0.0    1.3  1  HTH_45    Winged helix-turn-helix


Domain annotation for each model (and alignments):
>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   2.3e-24     2e-20       1      87 [.      19     104 ..      19     108 .. 0.98

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 2.3e-24
                 HHHSTTHHHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHHHHHH CS
        HxlR   1 liggkWkllilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkkwgeeyl 87 
                 +ig+ W+lli++  l+g +Rfse++++l +i+++mLa rL++L  +g++  ++ +      eY lt+kGr+l+ vl +l++w+++yl
  CTQ27416.1  19 VIGDWWSLLIVRDALRGVRRFSEFQKNL-GIAKNMLAGRLKMLVDEGILRLQPASDGSAWQEYVLTDKGRALQTVLVALSQWADDYL 104
                 79**************************.9******************************************************997 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.1e-05     0.095      28      67 ..      45      91 ..      28     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.1e-05
      HTH_45 28 kanLsykllnkYLdmLvekgli.......kkskekYvlTekGlelle 67
                +  +  ++l   L+mLv++g++           ++YvlT+kG+ l  
  CTQ27416.1 45 NLGIAKNMLAGRLKMLVDEGILrlqpasdGSAWQEYVLTDKGRALQT 91
                5556667778889********9999987666789********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1200.77
//
Query:       CTQ27417.1  [L=415]
Description: glucose-1-phosphatase/inositol phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-15   56.8   0.0    1.3e-14   54.4   0.0    1.9  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0     7e-19   1.3e-14      54     382 ..      64     365 ..      34     366 .. 0.74

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 7e-19
                 GGT.........--SSSTTS.B-HHHHHHHHHHHHHHHHHCH.TCCHTTSS--..TTEEEEEESSHHHHHHHHHHHHHHCHCCC---S-TTSTTGGG-T CS
  His_Phos_2  54 pgtyrkveveklqlilkwggelthaGrkqaeelGrqfrqrYp.lgLlrlhlty..kdlkirassegRviaSAaafakGllglegeltdllskdkdlldd 149
                 p           q+ +  g+ lt+ G +  + +G+++ +    ++L  ++ ++  + ++ +a s +R++a+A+ f++G ++++g               
  CTQ27417.1  64 P-----------QWDVPGGQ-LTTKGGVLEVYMGHYMSEWLAqQKLVTSGECPpeNAVYAYANSLQRTVATAQFFITGAFPGCG-----------IPVH 139
                 4...........77777777.********************9988888877666****************************99...........4555 PP

                 TTTCCCEEEHHHHCCCCHHCTTSHHTCHHHCHHHTGGHCHHHHCHCCCCCHHHHHHHCHHH....CTTEEEE-HHHHHHHHHHHHHHHH.......... CS
  His_Phos_2 150 snaakdlldeakkklkelltegaeacpafewpikvakrvdelvkylkedmdeniakrleql....cpgesnllakerwdklercfyekn.......... 234
                 ++ ++ ++d    + ++++t +   +paf++  k  + ++++ +  + ++ +++ + + ++     ++e+++   +  ++ ++  y+++          
  CTQ27417.1 140 HQPQMGTMDP---TFNPVITDD---SPAFRE--KALQAMEKERQGMQLTESYKLLETMIDYrnspSCKEKKVCSLSEGKDTFSAGYQQEpgvsgplkvg 230
                 6668999999...888888755...488887..444444444444444444444444444444444444588888888888888888887855555444 PP

                 ....HHCT-TTGGGCTH..HCHHHHHHHHHHHHHHHC........TTTCCCCHHHHHHHHHHHHHHHCTSSSEECCSCCCECS-SEEEEEE-HHHHHHH CS
  His_Phos_2 235 ....kfdiskicdlydemkydalhnrylkdleelyklakvipqEygigpeeklkiGllllnpllkkilndlqrtreeatperhvrlrlyfthdshiysl 329
                      +   +  + + + k  + + ++ k+ + l kl     ++y+ +  +  + ++ +++pl+k i n l+ +        ++++ l ++hds+i+sl
  CTQ27417.1 231 nslvDAFTLQYYEGFPKDKVAWGEIASDKQWRVLSKL----KNGYQDSLFTSVAVAQNVAKPLVKYIDNALVGEG-----ASKAKVTLLVGHDSNIASL 320
                 3333333333333343434444444445555555555....889999****************************.....89***************** PP

                 HHHCTTTTTBTTB.SSS.TTT..HCCCS-CT-EEEEEEEEETCTTT..EEEEEEE CS
  His_Phos_2 330 lnaLglpeelagedslaaldrlsaspelpymsqivfelyedssekk..fyvrlll 382
                 l+aL++     +           + + +p ++++ f ++ ds  ++  + +++++
  CTQ27417.1 321 LTALDFKPYQLPG----------QYERTPIGGKLLFQRWHDSAGNRdlMKIEYVY 365
                 ****887766666..........69999***********9844443367777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3123.21
//
Query:       CTQ27418.1  [L=75]
Description: hypothetical protein CH1034_180105 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-39  134.3   1.9    1.5e-39  134.2   1.9    1.0  1  YccJ      YccJ-like protein


Domain annotation for each model (and alignments):
>> YccJ  YccJ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   1.9   8.2e-44   1.5e-39       1      67 []       9      75 .]       9      75 .] 0.99

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 8.2e-44
        YccJ  1 hdvaeWasvRetsleiaeaifelandDeklaekiWeeGsDevLklafaktdkdkLfWgeetieRknv 67
                h v eWas+R+ts eiaeaife+a++Deklae+iWeeGsDevL lafaktdkd LfWge+tieRknv
  CTQ27418.1  9 HRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEQIWEEGSDEVLALAFAKTDKDSLFWGEQTIERKNV 75
                89****************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 577.23
//
Query:       CTQ27419.1  [L=200]
Description: putative conserved flavoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-13   48.2   0.1    1.3e-12   47.7   0.1    1.2  1  FMN_red       NADPH-dependent FMN reductase
    1.4e-06   28.6   0.1    5.7e-06   26.6   0.1    1.8  1  Flavodoxin_1  Flavodoxin
    5.5e-06   26.7   0.0    0.00019   21.7   0.0    2.1  2  Flavodoxin_5  Flavodoxin domain
    4.2e-05   23.3   0.0    5.5e-05   23.0   0.0    1.2  1  Flavodoxin_2  Flavodoxin-like fold


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.1   2.9e-16   1.3e-12      14     146 ..      15     144 ..       4     149 .. 0.84

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 2.9e-16
                 -HHHHHHHHHHCCT-T..T-CEEEEETTTS..--..---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-.SSCHCCTT- CS
     FMN_red  14 sntrklaewaaealkea.gaevelidladl.ilpcalcdkdlesegqtsddvaellekiaaadaliivtPeYngsysgllKnalDrlsrtrgkkelrgK 110
                 +  +++a+++a+ +++  g+ev + ++ +   +   ++ k     g+t+ +  +  + +a+ da+i++tP+ +g++sg++ ++lD ++  + + +l gK
  CTQ27419.1  15 GHIETMAHAVADGANRVdGVEVVVKRVPETmQAE--AFAKAG---GKTQNAPVATPQELAEYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGK 108
                 5668999999999977778999888888875555..444333...56888888999******************************************* PP

                 EEEEEEE-SSTTTTHHHHHHHHHHHHHTT-EEEECS CS
     FMN_red 111 pvalvavgggrrgglraeeqlrqvlaelgaivvpra 146
                 ++ +++  g+  g +++  +    la++g+i+vp +
  CTQ27419.1 109 IASVFSSTGTGGGQEQTITSTWTTLAHHGMIIVPIG 144
                 *****999999999999999999999******9974 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.1   1.3e-09   5.7e-06       1     123 [.       8     118 ..       8     129 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.3e-09
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   +lY+S++G+ e++A+++a+++++  ++  +v ++++ e    + +ea++  +  T +   p  + ++ ++ ++ ++g+    + + +++ ++  + d
    CTQ27419.1   8 VLYYSMYGHIETMAHAVADGANR--VDGVEVVVKRVPE---TMQAEAFAKAGGKTQN--APVATPQELAEYDAIIFGT---PTRFGNMSGQMRTFLD 94 
                   89*******************96..6679999*****6...6999999999999888..5666677677777777765...4457899999999999 PP

                   TTSSSTTHHHHHHHHHHHHTTCEEES CS
  Flavodoxin_1  98 sayenFcaagkkldekleelGaerll 123
                   +++    +a ++l  k+  ++ ++ +
    CTQ27419.1  95 QTGGL--WASGALYGKIASVFSSTGT 118
                   99999..9999999999888776655 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.012        52       1      42 [.       7      48 ..       7      54 .. 0.81
   2 !   21.7   0.0   4.3e-08   0.00019      26      91 ..      54     123 ..      37     136 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.012
  Flavodoxin_5  1 lilYsSrdGqTkkiaeriaeelree.gelvdvedvekesedle 42
                  l+lY S +G+ ++ a ++a+   +  g +v v+ v +e+ + e
    CTQ27419.1  7 LVLYYSMYGHIETMAHAVADGANRVdGVEVVVKRV-PETMQAE 48
                  79*****************9988767888888887.4555555 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 4.3e-08
  Flavodoxin_5  26 gelvdvedvekesedlesydavvigasvyygkllpelakFvekh.....reaLstkpvalfsvsltarkpe 91 
                   g  ++ ++v +  ++l++yda+++g++ + g+++++++ F+++        aL+ k   +fs   t  ++e
    CTQ27419.1  54 GGKTQNAPV-ATPQELAEYDAIIFGTPTRFGNMSGQMRTFLDQTgglwaSGALYGKIASVFSSTGTGGGQE 123
                   444455555.35669***************************98666666677777777777666655555 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.2e-08   5.5e-05       2     137 ..       5     119 ..       4     143 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.2e-08
                   EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCCT-----CCCCHCCHHHHTTC.HHHHHHHHHHHHCSSEEEEEEE-BTTB--HHHH CS
  Flavodoxin_2   2 kiLiinahprpeksfssalaqafvealekagphevtvrdLyadflpvlttrdlaaklayeekp.adveseqiekllaadaivlqfPlwwfgvPailK 97 
                   kiL+++ +  +  +    +a+a++++++  +  ev v  + ++    ++++ +a++      + a v++   ++l++ dai++++P  + +++ ++ 
    CTQ27419.1   5 KILVLYYSMYG--HI-ETMAHAVADGANRVDGVEVVVKRVPET----MQAEAFAKAGGKT--QnAPVATP--QELAEYDAIIFGTPTRFGNMSGQMR 90 
                   78888888877..44.778888888888887666777777774....7777777432222..32555555..59*********************** PP

                   HHHHHHS-TTTSCEETTCSSCCCCTTTTSEEEEEEEESS- CS
  Flavodoxin_2  98 gwiDrvltagfafyteeggegrgggLkgkkalvivttGgp 137
                    ++D+    g            +g+L gk a v ++tG  
    CTQ27419.1  91 TFLDQT--GGL-W--------ASGALYGKIASVFSSTGTG 119
                   *****5..554.2........2378889988888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1566.88
//
Query:       CTQ27420.1  [L=65]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 514.78
//
Query:       CTQ27421.1  [L=312]
Description: putative membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-27   96.4  36.3    2.6e-14   53.6  18.2    2.0  2  EamA      EamA-like transporter family
    0.00086   18.7   0.4    0.00086   18.7   0.4    1.5  2  TPT       Triose-phosphate Transporter family
  ------ inclusion threshold ------
        9.9    4.3  17.1      0.026   12.8   6.2    1.8  2  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6  18.2   4.3e-18   2.6e-14       5     135 ..      13     139 ..      10     141 .. 0.94
   2 !   49.1  10.1     1e-16     6e-13       3     134 ..     152     281 ..     150     284 .. 0.90

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 4.3e-18
        EamA   5 llallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePv 103
                  l++  ++fw+ +f++ +++++   pl+++++rf  a++++ +++l + + l   ++ ++++ + +g ++++l+++l++++l+++s+s+ ++it++ + 
  CTQ27421.1  13 ALLIMITMFWGGTFLAVQYAVSLSGPLFFVGLRFATAALAVGLLSLRTLRGL---TWLEVKAGVAIG-VAIALGYGLQTWGLQTISSSKSAFITAMYVP 107
                 57899999********************************************...777777766666.79***************************** PP

        EamA 104 ftlilsvlllgekltlkqllgivlillGvlli 135
                 ++ +l +l lg  +++++ +givl+++G++l+
  CTQ27421.1 108 LVPLLQWLCLGRMPGVMSCVGIVLAFIGLILL 139
                 ******************************97 PP

  == domain 2  score: 49.1 bits;  conditional E-value: 1e-16
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgl.lgtvlafllffyalkktsasnaslitsl 100
                 g+++ l++a+  a+ ++l+ +   kv+  ++t+v++  a+++ ++ + + +++   +sl++ ll + lgl + +++ ++ +++a++++s+++a+li + 
  CTQ27421.1 152 GEMITLASAVAIAAEIILISAWAGKVDVRRVTVVQLATASLVAFAAMKPAGESV--PSLTPALLGVALGLgIFSAIIQVTMNWAQRSVSPTRATLIYTG 248
                 78899******************************9877777777777777777..8888877777777668889999********************* PP

        EamA 101 ePvftlilsvlllgekltlkqllgivlillGvll 134
                 ePv++ i++ l  ge+l l+ llg+vlil+Gvl+
  CTQ27421.1 249 EPVWAGIFGRLA-GERLPLLALLGCVLILAGVLV 281
                 ************.*******************98 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.54   3.2e+03     109     109 ..     113     113 ..      40     141 .. 0.63
   2 !   18.7   0.4   1.4e-07   0.00086      34     136 ..     182     283 ..     176     286 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.54
         TPT 109 s 109
                  
  CTQ27421.1 113 Q 113
                 2 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.4e-07
         TPT  34 vsavqllvgsvlilvlwalglkkrpkisseflkailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGv 132
                 v++vql+  s++++++++   ++ p ++ ++l + l l+++ ++ +v+ + +  +v+   +  + + eP+++ i+ rl  ge+l+ll +l  + i++Gv
  CTQ27421.1 182 VTVVQLATASLVAFAAMKPAGESVPSLTPALLGVALGLGIFSAIIQVTMNWAQRSVSPTRATLIYTGEPVWAGIFGRL-AGERLPLLALLGCVLILAGV 279
                 899**************9999********************************************************9.9******************* PP

         TPT 133 alas 136
                  ++ 
  CTQ27421.1 280 LVSE 283
                 9875 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.7   6.9       1.7     1e+04      42     123 ..      40      94 ..       2     141 .. 0.34
   2 ?   12.8   6.2   4.3e-06     0.026      22     171 ..     129     281 ..     116     291 .. 0.72

  Alignments for each domain:
  == domain 1  score: -5.7 bits;  conditional E-value: 1.7
     DUF2070  42 llfglpalvaflltlpvlrilggrltykrslflalltelivviisllaillsallqalvllalvlslalvfalrllvlvavs 123
                 +++gl                         +  a+l+  ++++ +l +++     +     a+ +++al  +l++  l ++s
  CTQ27421.1  40 FFVGLR------------------------FATAALAVGLLSLRTLRGLTWL---EVKAGVAIGVAIALGYGLQTWGLQTIS 94 
                 222222........................1111111111111111111111...111222222223333333333333333 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.3e-06
     DUF2070  22 illalligllaflssk......lfgillfglpalvaflltlpvlrilggrltykrslflalltelivviisllaillsall..qalvllalvlslalvf 112
                 i+la++  +l  l+++      l    +++l   va+++   +++   g+++++r +++ l+t+ +v++  + ++  s+    +al+  al l+ ++++
  CTQ27421.1 129 IVLAFIGLIL--LAGPennllaLGVGEMITLASAVAIAAEIILISAWAGKVDVRRVTVVQLATASLVAFAAMKPAGESVPSltPALLGVALGLG-IFSA 224
                 3333332222..22222344554444456666888888889999999999******99999999999999999998876556688888888888.8999 PP

     DUF2070 113 alrllvlvavsdesllkavlpaliqpllailllvlyfspesfllllllslifalavylf 171
                 ++++ + +a  + s+++a+l+++  p+ a ++  l    e+ +ll+ll ++++la +l+
  CTQ27421.1 225 IIQVTMNWAQRSVSPTRATLIYTGEPVWAGIFGRLA--GERLPLLALLGCVLILAGVLV 281
                 99999*****************************99..345555555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2278.40
//
Query:       CTQ27422.1  [L=440]
Description: Putative pyrimidine permease rutG (Pyrimidine utilization protein G) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     6e-100  334.7  48.4     6e-100  334.7  48.4    1.3  1  Xan_ur_permease  Permease family


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.7  48.4  3.3e-104    6e-100       1     385 [.      30     400 ..      30     404 .. 0.96

  Alignments for each domain:
  == domain 1  score: 334.7 bits;  conditional E-value: 3.3e-104
                      HHHHHHHHHHHHHHHHHHHHHHHTTTS-.........H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-.........HHHHH CS
  Xan_ur_permease   1 gqllllglQhllamfaalvvvPllvgdalglaeelrqlisatllasGiatllqllifgirlpillgssfafvtalmialGsa.....edieial 89 
                      gq+l++g+Qh +amf+a+v++Pll+g +          +++++l+sG++tll+++++g+r+p++lgss afv++++  +G++     ++ ++al
       CTQ27422.1  30 GQTLVMGVQHAVAMFGATVLMPLLMGLD----------PNLSILMSGVGTLLFFVVTGGRVPSYLGSSAAFVGVVIAITGFNgqglnPHLSVAL 113
                      699*************************..........9**********************************999999988************ PP

                      HHHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHHHHHHHHHSSSTTTT CS
  Xan_ur_permease  90 agllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaavegltvvslkllllavvvllvilllsvflkglfs 183
                      +g++ ++lv++++ ++++++g+r ++ rl+pPvvtg+vv+ iGl+la+iav++v++ +              ++av ++l+i +++vf++g+++
       CTQ27422.1 114 GGIIACGLVYTLIGLVVMKIGTR-WIERLMPPVVTGAVVMAIGLNLAPIAVRSVSASA-----------FDSWMAVLTVLCIGIVAVFTRGMLQ 195
                      **********************9.********************************97...........356********************** PP

                      THHHHHHHHHHHHHHHHHH.......HTTSSHHHHS-SS-----------HH..H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TIIIIIHH CS
  Xan_ur_permease 184 qlpiLigiiagwllalfmg.......ivnlspevseapwfqlpsplkfgtplfnlgliltvlavalvavvesvGdiravakvvgrslkpkpdlr 270
                      +l iL+g+i++++l++ +         +++sp + +a+wf lp   +f++p+fn ++++++ +va+++v+e++G+++ava+++gr+++  p ++
       CTQ27422.1 196 RLLILVGLIVACALYALLAnglglgkPLDFSP-LAQAAWFGLP---HFTPPSFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMD--PYMG 283
                      *************9988754333446688999.*********9...99****************************************..**** PP

                      HHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS CS
  Xan_ur_permease 271 ralladGlatllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdl 364
                      ra+++dGlat+lsg +G+++vttyaeniGv+a+tkv+s+ v+v a++i++llg++pk++ l+++IP+pv+gG+++vvfg+ia++g +++ ++++
       CTQ27422.1 284 RAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAALIAMLLGFSPKFGTLIHTIPGPVIGGASIVVFGLIAVAGARIWVQNRV 377
                      ********************************************************************************************** PP

                      -..SHHHHHHHHHHHHHHHH--- CS
  Xan_ur_permease 365 d..sarnllivavslvlGlgvat 385
                      d  ++ nl++v+v+lvlG+g ++
       CTQ27422.1 378 DlsQNSNLIMVSVTLVLGAGDFA 400
                      *9999**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2880.64
//
Query:       CTQ27423.1  [L=164]
Description: putative flavin reductase rutF (Pyrimidine utilization protein F) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-31  108.6   0.2    3.3e-31  108.4   0.2    1.0  1  Flavin_Reduct  Flavin reductase like domain
  ------ inclusion threshold ------
      0.073   13.0   0.0       0.12   12.3   0.0    1.3  1  SHP            Small hydrophobic protein


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   0.2   3.7e-35   3.3e-31       1     154 [.      13     159 ..      13     160 .. 0.93

  Alignments for each domain:
  == domain 1  score: 108.4 bits;  conditional E-value: 3.7e-35
                    HTTS-EE-EEEEE.EETTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCCCCEEECT CS
  Flavin_Reduct   1 mrrvaqpvavvttsvpptsplgatlssftslsldPplvafslrlpsstadalkeagefvinllsesqealadafsqksgprtddksifagltwees 96 
                    m +v   v ++tt + p  ++g+t+s+++s++ +Pp+++++l+++ s + ++ e + +++n l++ qe l   f++k++   d++  fa  +w+++
     CTQ27423.1  13 MAHVGAAVNIITT-DGPAGRAGFTASAVCSVTDTPPTLLVCLNRSASVWPVFSEHHTLCVNTLAAGQETLSTLFGGKTA--MDER--FAAADWQTG 103
                    7889999******.6677777*******************************************************655..6777..********* PP

                    CCCSEEETTCSEEEEEEEEEEECCTTEEEEEEEEEEEEESTTECTTBEECCCCCEEEE CS
  Flavin_Reduct  97 ptgapallgalasleCqvvgsvelgdhelfigeVvavkvgddadeepLlywrrryagl 154
                    +tg+p+l+ al+s++C++ ++v +g+h+++ + Vva+  + +    +L++++r y++l
     CTQ27423.1 104 ATGCPRLEAALVSFDCRIDQRVSVGTHDILFCHVVAITRHPEPR--GLMWFDRGYHTL 159
                    *************************************8887744..7********986 PP

>> SHP  Small hydrophobic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.4e-05      0.12      40      59 ..      59      78 ..      45      81 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.4e-05
         SHP 40 ilnklsehktfcnntlelGq 59
                +   +seh t+c ntl  Gq
  CTQ27423.1 59 VWPVFSEHHTLCVNTLAAGQ 78
                55668************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1233.44
//
Query:       CTQ27424.1  [L=196]
Description: oxidoreductase subunit of the alternative pyrimidine degradation pathway [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-15   56.4   0.0    4.5e-15   56.1   0.0    1.1  1  Nitroreductase  Nitroreductase family


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   2.5e-19   4.5e-15       4     170 .]      17     174 ..      14     174 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 2.5e-19
                     --B---B-S----HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEEEE-- CS
  Nitroreductase   4 RrSiRkFddepvpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvliviva 98 
                      r+++   d+pv++++l+ + +   + P++ n  p r+v v++ e ++kl++ + + +l+++ qa            +   +++++ p+l+    
      CTQ27424.1  17 ARTHNGWLDKPVSDAQLQAVWDLMKMGPTSANCSPARIVFVRSAEGKEKLRPTLSSGNLQKTMQAPVTAIV------AWDSAFYDRLPTLF-PHG 104
                     6999999************************************************9999999999988873......45666666666655.559 PP

                     -TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE- CS
  Nitroreductase  99 tldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavGy 170
                     ++  + + ++  a+++a+ ++++ a  l+ a++alGl++ p++gfd+++  v++ +  +++++  +l+ +Gy
      CTQ27424.1 105 DARSWFTSSPQLAEETAFRNSSLQAAYLIFACRALGLDTGPMSGFDREK--VDAAFFADNGWKSNLLVNIGY 174
                     99999999*****************************************..********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1549.76
//
Query:       CTQ27425.1  [L=267]
Description: enzyme of the alternative pyrimidine degradation pathway [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-20   73.6   0.3    5.6e-18   65.5   0.3    2.1  1  Abhydrolase_1    alpha/beta hydrolase fold
      5e-10   39.1   0.1    9.1e-10   38.2   0.1    1.5  1  Hydrolase_4      Serine aminopeptidase, S33
    1.8e-09   38.5   7.4    2.3e-09   38.2   7.4    1.1  1  Abhydrolase_6    Alpha/beta hydrolase family
     0.0028   16.4   0.0     0.0047   15.7   0.0    1.4  1  Ndr              Ndr family
  ------ inclusion threshold ------
      0.019   15.1   0.6      0.082   13.0   0.6    1.8  1  Thioesterase     Thioesterase domain
       0.08   12.6   0.1        0.1   12.2   0.1    1.3  1  Esterase         Putative esterase
       0.19   11.6   0.0        0.4   10.6   0.0    1.4  1  SpoIISB_antitox  Antitoxin SpoIISB, type II toxin-antitoxin s


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.3   2.2e-21   5.6e-18       1     252 [.      15     240 ..      15     245 .. 0.88

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 2.2e-21
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    pv+v+  Gl+g++++w +     aL++ +++++ +D+ G g+   ++     dy++a++a  l  +l+a g+ +++lvGh +G +i+l++a++ pe
     CTQ27425.1  15 PVVVLSAGLGGGGGYWLA--QRAALEE-QYQLVSYDHNGTGENAGPLP---ADYNLATMAGELFSALQAAGIARFALVGHALGALIGLQLALDRPE 104
                    789999999999999999..7777777.***************99999...9******************************************** PP

                    GEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHH CS
  Abhydrolase_1  97 rVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieqw 192
                     V+al+l+++      + ++ ++ +  f+   +   a +a+ +   +  + + a +   rl            + + + + a+s  +g  + +++ 
     CTQ27425.1 105 AVSALALVNG------WLSLSPHTRRCFQVRERLLHAGGAQAWVEAQPLFLYPAEWMAARL-----------PRLEAEDALAISHFQGKENLLKRL 183
                    **********......888888888888888777777777777666555555555555443...........4555677999************** PP

                    HHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSH CS
  Abhydrolase_1 193 pttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHla 252
                    +++  a + +r      + +ptl+is+++D lvp + ++ l+ ++p++++v  + +gH  
     CTQ27425.1 184 QALKQADFSRRAAA---IACPTLIISAADDLLVPASCSRVLQTAIPGSQHVEMPWGGHAC 240
                    *********99665...99**********************************9999975 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   3.5e-13   9.1e-10      28     219 ..      37     227 ..      13     238 .. 0.76

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 3.5e-13
  Hydrolase_4  28 aaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklkappllkl 125
                   ++ ++ + +Dh G G+++g      ++ ++   l ++++++      +++ l+Gh +G+li l+++l++p+ v++l l++ +l++ ++  ++++ ++
   CTQ27425.1  37 LEEQYQLVSYDHNGTGENAGPLPADYNLATMAGELFSALQAAG----IARFALVGHALGALIGLQLALDRPEAVSALALVNGWLSLSPH--TRRCFQV 128
                  46789*************9888878888888888877765554....8899************************************99..5666666 PP

  Hydrolase_4 126 llkll....gkllpklqvsnnlkadslsrdpevvaayeadplvhgkitvrlllellda.mkrleeraakitlPllllhGeaDkvvdpeasrelyerlg 218
                    +ll    ++++ + q+     a+++     +++a +a  + h++ + +ll  l  + +++  +raa+i  P+l++++++D +v+ + sr l  +++
   CTQ27425.1 129 RERLLhaggAQAWVEAQPLFLYPAEWMAARLPRLEAEDALAISHFQGKENLLKRLQALkQADFSRRAAAIACPTLIISAADDLLVPASCSRVLQTAIP 226
                  555550000455555555555666777777777776666666699999999888766525678999********************999988887776 PP

  Hydrolase_4 219 s 219
                   
   CTQ27425.1 227 G 227
                  5 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   7.4   8.8e-13   2.3e-09       1     210 [.      17     241 ..      16     250 .. 0.56

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 8.8e-13
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTST.S-GGCS--HHHCHHH.HHHHCCTT...TTSEEEEEETCHHHHHHHHHHCC....... CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhG.rsdpppldledladl.aalldelaa.gggpvvlvGHSlGGalalaaapla......l 87 
                    v+l  G+g++++ Wl    +a+l ++++ +++D  G+G  + p p d++  a+   +l  +l a g  ++ lvGH lG++++l+   la      +
     CTQ27425.1  17 VVLSAGLGGGGGYWL--AQRAALEEQYQLVSYDHNGTGeNAGPLPADYNL-ATMaGELFSALQAaGIARFALVGHALGALIGLQ---LAldrpeaV 106
                    6888999999999*8..667777999999********9523445555544.5555444444444468999**************...666666641 PP

                    .EE.EEES-..----TTT.S----TTHHHHHHTT-CCCCHCCHS-HS.CCCCHHHCCCCHCHCCCGHH...................HHCCHHCHT CS
  Abhydrolase_6  88 vvg.vlldppptalpagl.laaalelllallallrllawlsreplpr.lfladedadaawrarlarla...................allaglgll 161
                     ++  l+++    l ++   ++ +++ ++ll +  + aw+ +    +  +++     a+w a+  + +                   +l+a   + 
     CTQ27425.1 107 -SAlALVNG---WLSLSPhTRRCFQVRERLLHAGGAQAWVEAQ---PlFLYP-----AEWMAARLPRLeaedalaishfqgkenllkRLQALKQAD 190
                    .22455555...4444444444444444444444445555321...112222.....222222222222222222333333333333333322233 PP

                    TCCHHTT-TTGCEEE.CTT-CHHHHCHHCCCH..STTEEETCE...SSS-HH CS
  Abhydrolase_6 162 paaawadlpvpllvl.ggeDplvprllerlla..qagarlpvvlpgaGHlph 210
                      ++ a++ +p+l++ +++D lvp+   r l+  ++g +  v++p +GH+ +
     CTQ27425.1 191 FSRRAAAIACPTLIIsAADDLLVPASCSRVLQtaIPGSQH-VEMPWGGHACN 241
                    4558888888889995577779997766666666666666.88888888444 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.8e-06    0.0047      53     135 ..      38     117 ..      31     210 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.8e-06
                 HTTSEEEEEE-TT-STT-----TT-----HHHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S CS
         Ndr  53 lekfvilhvdaPGqeegaaslpedyqfpslddladqllavldhfklksviglGvgaGAyilarfalkhperveglvLinitsk 135
                  e+  ++  d  G  e+a +lp dy+  ++   a +l + l+   +  +  +G   GA i ++ al  pe v++l L+n   +
  CTQ27425.1  38 EEQYQLVSYDHNGTGENAGPLPADYNLATM---AGELFSALQAAGIARFALVGHALGALIGLQLALDRPEAVSALALVNGWLS 117
                 566666777888999*********887776...789******************************************96555 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.6   3.2e-05     0.082      41     217 ..      57     243 ..      24     254 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-05
                   HHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEEEEESCCCCCCHHCHHCCCHTTHHTHHHHHCCTTHH..... CS
  Thioesterase  41 depplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavkslflidssapseteaqeasrraedeefveeltdlggt..... 132
                   + p+  +++++a e++ al++      +al+Gh lG+l+  ++A    ++ +av +l l+ ++ + +      +++  + +++e l   gg+     
    CTQ27425.1  57 PLPADYNLATMAGELFSALQAAGIA-RFALVGHALGALIGLQLAL---DRPEAVSALALVNGWLSLS------PHTRRCFQVRERLLHAGGAqawve 143
                   5556668999999999999988777.9***************997...5778888888888877755......666666677777777777776665 PP

                   HCCTTTHCCHHHHHHHHHHHH.HHHHHTCCS...........-TTSCSE...........HHCEEEEEEGSS-CTCCCCCCCHCH.CHCTCESCEEE CS
  Thioesterase 133 epeelledeellsellpalra.dyraleqys...........lrpeaaq...........klratlfngsddklkdldtlelaer.weqktsgevsv 205
                   + + +l   e+++  lp+l a d++a+  ++           l     +            +++ +    dd l  ++     +r +++ ++g  +v
    CTQ27425.1 144 AQPLFLYPAEWMAARLPRLEAeDALAISHFQgkenllkrlqaL-----KqadfsrraaaiACPTLIISAADDLLVPASC----SRvLQTAIPGSQHV 231
                   5566778888888888888652566666666777766553330.....1335556666668889999999999999994....22377899999999 PP

                   EEESSHCCHHHS CS
  Thioesterase 206 hvlegdhfylle 217
                   ++ +g+h+  ++
    CTQ27425.1 232 EMPWGGHACNVT 243
                   999999987665 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1     4e-05       0.1     117     157 ..      83     154 ..      32     199 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4e-05
                 EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC...............................HCHH CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgsvssfSpivnps...............................namW 157
                  a++G+ +G+l+ L lal++p+  +  +   + +++s                               +a W
  CTQ27425.1  83 FALVGHALGALIGLQLALDRPEAVSALALVNGWLSLSphtrrcfqvrerllhaggaqawveaqplflyPAEW 154
                 58**********************999999999999988888888887777777744444444444443333 PP

>> SpoIISB_antitox  Antitoxin SpoIISB, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00016       0.4      33      48 ..     118     133 ..     116     135 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
                      --HHHHHHHHHHHHHH CS
  SpoIISB_antitox  33 VSPhTeRiFkkNErLi 48 
                       SPhT R F+  ErL+
       CTQ27425.1 118 LSPHTRRCFQVRERLL 133
                      6**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2041.32
//
Query:       CTQ27426.1  [L=130]
Description: putative enzyme rutC (Pyrimidine utilization protein C) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-31  109.2   0.0    1.5e-31  108.9   0.0    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   8.3e-36   1.5e-31       6     120 ..      13     125 ..      10     126 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 8.3e-36
                    TTSSS-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--EEEE CS
  Ribonuc_L-PSP   6 aaaapYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaParsa 101
                    a++ap++++  a+++vyvsG+lp+d++++ +  gd+++qtr++le+++ v+++ag s++dv   ++F++d++++a++nevyae+f+ +k  Par++
     CTQ27426.1  13 APIAPFVPGTLADGVVYVSGTLPFDKQNNVVHIGDPKAQTRHVLETIRSVIETAGGSMADVTFNSIFITDWTNYAAINEVYAEFFPGDK--PARFC 106
                    469**********************8666666********************************************************8..***** PP

                    EE-SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP 102 veVaaLpkgakvEIeaiav 120
                    +++  ++++a+vEI  +a+
     CTQ27426.1 107 IQCGLVKPDALVEIASVAH 125
                    ***************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1090.98
//
Query:       CTQ27427.1  [L=236]
Description: putative isochorismatase family protein rutB (Pyrimidine utilization protein B) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-41  142.0   0.0    2.8e-41  141.6   0.0    1.2  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   0.0   1.5e-45   2.8e-41       1     174 [.      18     215 ..      18     216 .. 0.96

  Alignments for each domain:
  == domain 1  score: 141.6 bits;  conditional E-value: 1.5e-45
  Isochorismatase   1 talvviDmqndfv......eegvkeseeisavveninkllkaarkagipviftrdvhe.................leevkgdlderkaaphfkp 71 
                      +al+v+Dmqn ++      + ++ ++ + + v++nin +++aar+ag+ +i+++   +                      + ++++ + + + +
       CTQ27427.1  18 SALIVVDMQNAYAsqggylDLAGFDVSATRPVIDNINTAVAAARAAGMLIIWFQNGWDdqyveaggpgspnyhksNALKTMRQRPELQGKLLAK 111
                      79****************999*********************************99999************998755566667778888999** PP

  Isochorismatase  72 gttgaelvpelaplegdvvvdKtrfsafagtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspel.hdaalkrlk 164
                      g ++ +lv+el+p+egd+v+ K r+s+f++t+ld iL+++gi+++v++Giat+vCVe+t rd++ l+y  +v++DA+    p   ++aal +++
       CTQ27427.1 112 GGWDYQLVDELTPQEGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGIVLEDATHQAGPAFaQQAALFNIE 205
                      ********************************************************************************************** PP

  Isochorismatase 165 qafatvitte 174
                        f++v ++e
       CTQ27427.1 206 TFFGWVSDVE 215
                      ******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1928.40
//
Query:       CTQ27428.1  [L=363]
Description: Putative monooxygenase rutA (Pyrimidine utilization protein A) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-69  235.3   0.5    1.3e-69  235.1   0.5    1.0  1  Bac_luciferase  Luciferase-like monooxygenase
  ------ inclusion threshold ------
      0.076   12.5   0.0       0.15   11.5   0.0    1.5  1  Copine          Copine


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.1   0.5   1.4e-73   1.3e-69       1     309 [.       1     320 [.       1     325 [. 0.97

  Alignments for each domain:
  == domain 1  score: 235.1 bits;  conditional E-value: 1.4e-73
  Bac_luciferase   1 mefgvflptrqggalgaas.....aslrylvelaraaEelGfdavwvaehhggpgga.......ldaftllaalaaaTerirlgtavtplytrhP 83 
                     m++gvf+p+ ++g+l ++      ++++ +++++++aE++ fd+++ + +++g+gg+       l++ftl+a laa+T++i++ +++ +l+   P
      CTQ27428.1   1 MKIGVFVPIGNNGWLISTHapqymPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKtefwdhnLESFTLMAGLAAVTSKIQIYATAATLT-LPP 94 
                     99*****************************************************************************************.*** PP

  Bac_luciferase  84 avlAqqaatLdhlsgGRfglglgtggpaveerrfGv.....dhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgpiPvyvaa 173
                     a++A++a t+d +sgGRfg++l+tg++++e++++G+      ++ ry++l E+v+vlr lw ++++df+G++f++++++++prp q+   v++a+
      CTQ27428.1  95 AIVARMASTIDSISGGRFGVNLVTGWQKPEYDQMGMwpgddYFASRYDYLTEYVQVLRDLWGTGRSDFKGDYFTMNDCRVSPRPSQP-MKVICAG 188
                     ***************************************9*********************88999******************777.88***** PP

  Bac_luciferase 174 aspaglelaarhadglllag...eppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraearaliagldfyaldsegagreaeaa 265
                      s+ag+++ a+had  +++g   ++p + a +++r+ ++a++ gr   d+  ++ ++vi+++t+e+Ara+++++     + a+++++a+  ++  
      CTQ27428.1 189 QSDAGMAFSAQHADYNFCFGkgvNTPTAFAPTAARMMQAAEKTGR---DVGSYVLFMVIADETDEAARAKWEHYK----AGADEEALAWLTEQSQ 276
                     *********************************************...9**********************8777....6789999999999999 PP

  Bac_luciferase 266 eiqeeedanlwagaadavpdelvaatalvGtpeqvaerlaayae 309
                     ++++  +  + +++ad  ++ +++  +lvG+++ va  l+++a+
      CTQ27428.1 277 KDTRSGSDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVAS 320
                     99999********************************9999876 PP

>> Copine  Copine
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.7e-05      0.15      83     118 ..     212     247 ..     204     302 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.7e-05
      Copine  83 ygPTnfapviekvakiaeasakeasqYfvLliitDG 118
                   PT fap   ++++ ae++ ++ ++Y + ++i+D 
  CTQ27428.1 212 NTPTAFAPTAARMMQAAEKTGRDVGSYVLFMVIADE 247
                 57********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 3088.51
//
Query:       CTQ27429.1  [L=212]
Description: DNA-binding transcriptional regulator of the alternative pyrimidine degradation pathway [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-59  198.1   0.1    7.8e-59  197.7   0.1    1.2  1  TetR_C_3   YcdC-like protein, C-terminal region
    1.1e-14   53.9   0.4    1.7e-14   53.3   0.4    1.3  1  TetR_N     Bacterial regulatory proteins, tetR family
     0.0003   20.9   0.0    0.00053   20.1   0.0    1.4  1  TetR_C_29  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_3  YcdC-like protein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.7   0.1   1.3e-62   7.8e-59       1     142 [.      70     211 ..      70     212 .] 0.99

  Alignments for each domain:
  == domain 1  score: 197.7 bits;  conditional E-value: 1.3e-62
                 HHHHHHHHHHHHHH--TTS-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSS-S--HHHHHHHHHH CS
    TetR_C_3   1 LesiletwlealkeleeeddPaealaayiraKleisrdkPeasrlfanEilqGapllkeelkeelkelvkekaaviqaWieegklakvdpkhLlfsiWa 99 
                 L++il+ wl++lk+++e+  P+ a+++yir Kle+srd+P+as+lf++E+lqGapll+ el+++lk+lv+ek a++  Wi++gkla+vdp+hL+f+iWa
  CTQ27429.1  70 LQQILAIWLAPLKAFREDISPLVAIREYIRLKLEVSRDHPQASKLFCLEMLQGAPLLMGELTGDLKALVDEKSAIVSGWIDRGKLAPVDPQHLIFMIWA 168
                 799************************************************************************************************ PP

                 HHHHHHHTHHHHHHHHS--TTSHHHHHHHHHHHHHHHHHHHS- CS
    TetR_C_3 100 lTqhYadfdvQveavtgkekldesdfdeaaetvtrlvlkgiep 142
                 +TqhYadf++Qveavtg + +d+++f++++++v+r++++gi+ 
  CTQ27429.1 169 TTQHYADFATQVEAVTGATLQDAAFFEQTVDNVQRMIIEGIRV 211
                 ****************************************986 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.4   2.9e-18   1.7e-14       1      47 []      23      69 ..      23      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 2.9e-18
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                Il+aA+e f++ G+++t ++++A+rAGvsk  l +y+psKe+L+ a+
  CTQ27429.1 23 ILAAALEAFSQFGIHGTRLEQVAERAGVSKTNLLYYYPSKEALYVAV 69
                9******************************************9986 PP

>> TetR_C_29  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   8.9e-08   0.00053       1     119 []      90     205 ..      90     205 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 8.9e-08
                 HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHS-TT--TTS--SS-.THHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHHHHHHHHHTHHHHHHHH- CS
   TetR_C_29   1 PvealrrlveftfdyhaanpefvrLvsiEnlhrgrhlkksesirelnspliekleeilerGqaagvFrpgvdaldlyllisslcffrvsnrhtlsalfg 99 
                 P  a+r+ ++   +  +++p++ +L + E l+ +  l    +++   ++l+++ + i+    ++g + p vd+++l+++i + + ++      ++a+ g
  CTQ27429.1  90 PLVAIREYIRLKLEVSRDHPQASKLFCLEMLQGAPLL--MGELTGDLKALVDEKSAIVSGWIDRGKLAP-VDPQHLIFMIWATTQHYADFATQVEAVTG 185
                 889**************************99999999..77777779**********************.***************************** PP

                 --TTSHHHHHHHHHHHHHHH CS
   TetR_C_29 100 rdlsspealerrralivdmV 119
                   l++++  e+  + +  m+
  CTQ27429.1 186 ATLQDAAFFEQTVDNVQRMI 205
                 ******99999888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1661.51
//
Query:       CTQ27430.1  [L=131]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-20   72.7   9.3    3.9e-20   72.4   9.3    1.1  1  LprI      Lysozyme inhibitor LprI
  ------ inclusion threshold ------
       0.14   12.2   4.7       0.16   12.0   3.4    1.8  2  PepSY_2   Peptidase propeptide and YPEB domain
       0.37   10.6   1.8       0.56   10.0   1.8    1.2  1  TrbI      Bacterial conjugation TrbI-like protein


Domain annotation for each model (and alignments):
>> LprI  Lysozyme inhibitor LprI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   9.3   6.5e-24   3.9e-20       1      99 [.      22     108 ..      19     112 .. 0.84

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 6.5e-24
                 XXXTTT-HHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT....HHHHHHHHHHHHHHHHHHHHHHHTTTS-TTSHHH....HHHHHHHHHHHHH CS
        LprI   1 Csdkaseaetqa..nqCasaalkaadaeLnkaykalkeekekkavssearkaLkdaqraWikyRdaeCalakspakegsgaggsmeplayasClarltq 97 
                 Cs++++    q+  nqCa+a+++aad++Ln ++++++     +++  ++++ Lk+aq+aWi+ Rda+Ca+++s a++     gsm+p+++++C+++ + 
  CTQ27430.1  22 CSSANT----QTemNQCAAAQYQAADKKLNDTWQQAL-----QRAVGKQQTLLKQAQQAWIALRDADCAFLASGAEG-----GSMQPMLVSQCMTDKSV 106
                 566554....4445*******************6666.....4555667788****************999988888.....9*************998 PP

                 HH CS
        LprI  98 eR 99 
                 eR
  CTQ27430.1 107 ER 108
                 88 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.4   2.7e-05      0.16       2      36 ..       4      37 ..       3      46 .. 0.81
   2 ?   -2.4   0.0       0.8   4.8e+03      34      50 ..      91     107 ..      73     110 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.7e-05
     PepSY_2  2 aalalalallaaaAlAgrrdtdspkadwlpreklv 36
                +++a++++l+++aAlA ++++ + ++ ++++ ++ 
  CTQ27430.1  4 TLFAVMALLASGAALA-DECSSANTQTEMNQCAAA 37
                57788889999*****.999999999999876654 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.8
     PepSY_2  34 klvakleaqGykvkkie 50 
                  ++ +l  q+++ k++e
  CTQ27430.1  91 SMQPMLVSQCMTDKSVE 107
                 56667777777766666 PP

>> TrbI  Bacterial conjugation TrbI-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.8   9.3e-05      0.56     110     169 ..       7      64 ..       2      71 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.3e-05
                 -SEEEEES---EEEE------------HHHHHHHHT-TT-BHHHHHHHHHHHHTTS--EE CS
        TrbI 110 lllsllsgagellnaassssttsstgtqslaaavgegasqalsqvaqrilkraeniqpti 169
                 ++++ll++++ l++  ss++t+++ +  + aaa  ++a ++l+++ q++l+ra   q t+
  CTQ27430.1   7 AVMALLASGAALADECSSANTQTEMN--QCAAAQYQAADKKLNDTWQQALQRAVGKQQTL 64 
                 56788888888887777777777665..599*********************99888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1578  (0.0880138); expected 358.6 (0.02)
Passed bias filter:                      788  (0.0439511); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1060.08
//
Query:       CTQ27431.1  [L=1320]
Description: fused DNA-binding transcriptional regulator; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.4e-112  376.6   0.1     3e-112  375.5   0.1    1.5  2  Aldedh          Aldehyde dehydrogenase family
   8.3e-101  337.4   0.0   1.6e-100  336.4   0.0    1.5  1  Pro_dh          Proline dehydrogenase
    1.2e-46  157.8   0.0    3.2e-46  156.5   0.0    1.8  1  Pro_dh-DNA_bdg  DNA-binding domain of Proline dehydrogenase
    8.2e-19   67.6   2.7    8.2e-19   67.6   2.7    4.4  6  PRODH           Proline utilization A proline dehydrogenase N


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.63   2.8e+03     282     321 ..     342     378 ..     339     382 .. 0.88
   2 !  375.5   0.1  6.7e-116    3e-112       7     453 ..     659    1106 ..     654    1113 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.63
                 HHHHHHHHHHHHHT--BS-TTSTT-SB---SSHHHHHHHH CS
      Aldedh 282 ydefveklveaakklkvgdpldedtdvGPliseaqlekve 321
                 yd+++e+l  ++k+l++   l+++ d+G  i++++++++e
  CTQ27431.1 342 YDRVMEELYPRLKSLTL---LARQYDIGINIDAEEADRLE 378
                 9**************99...77799999999999999876 PP

  == domain 2  score: 375.5 bits;  conditional E-value: 6.7e-116
                  SEEEEEETT.TCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH CS
      Aldedh    7 etievinPa.tgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyae 102 
                  e  +v+nPa  +++++ v++a+ ++v++a+ +A +  + w ++p++eRa+iL++aa l+e++   l+ ++++e+Gk++++a aev+ea+d+l+yya+
  CTQ27431.1  659 EMQPVVNPAePKDIVGYVREASDAEVQQALTSAINNAPIWFATPPQERAAILERAAVLMESQMPTLMGILVREAGKTFSNAIAEVREAVDFLHYYAG 755 
                  5589*****9999************************************************************************************ PP

                  HHHH.HSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHH CS
      Aldedh  103 laek.legevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevge 198 
                  ++++  + e+            ++PlG v++I+PWNfPl+++++++a+alaaGN+v+ KPae+tpl+a+  + ++ eag+P+gv+++++g+g++vg+
  CTQ27431.1  756 QVRDdFDNET------------HRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGVAILLEAGVPPGVIQLLPGRGETVGA 840 
                  ***9455454............89************************************************************************* PP

                  HHHH-TTESEEEEES-HHHHHHHHHHHHCTT......SEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHH CS
      Aldedh  199 alvehpevdkvsftGstevgrkiakaaaknl......krvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefvekl 289 
                  al+++++v+ v+ftGstev+  ++++ a++l      +++++E+GG n++iv ++a  +++v +++++af +aGQ+C+a + l +qe+++d+ +  l
  CTQ27431.1  841 ALTSDERVRGVMFTGSTEVATLLQRNIASRLdpqgrpTPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQEEVADHTLTML 937 
                  **************************887766666679*********************************************************** PP

                  HHHHHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT...E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEES.. CS
      Aldedh  290 veaakklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGge...reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfk.. 381 
                    a+++ ++g+p + +td+GP+i++++ e++e++++  +++g ++    +   ++ ++ ++g fv Pt+++   ++ + +++E+FGPVl v++++  
  CTQ27431.1  938 RGAMSECRMGNPGRLTTDIGPVIDAEAKENIERHIQAMRAKGRTVYQAVRensEDAREWRHGTFVPPTLIE--LDSFDELKKEVFGPVLHVVRYNrn 1032
                  ************999***************************999987666677788899***********..47778889*************976 PP

                  SHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTT.SEB--CGGGEES.-BSHHHHH CS
      Aldedh  382 deeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaea.lpfgGvkqSglG.reggkegl 453 
                  ++++++e  N++ yGL+ gv+t+  e++ +v+ + ++Gn+y+N+ ++ga+   +pfgG + Sg+G + gg+ +l
  CTQ27431.1 1033 ELDKLVEQINASGYGLTLGVHTRIDETIAQVTGSAKVGNLYVNRNMVGAVVGvQPFGGEGLSGTGpKAGGPLYL 1106
                  799**************************************************************666666665 PP

>> Pro_dh  Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.4   0.0  3.7e-104  1.6e-100       3     296 .]     270     569 ..     268     569 .. 0.98

  Alignments for each domain:
  == domain 1  score: 336.4 bits;  conditional E-value: 3.7e-104
                 HHHHHHHHTTEEEEEEES-SS--SHHHHHHHHHHHHHHHHHHHHHHCCS-TTCC-SEEE-GGG..TT-SGGGHHHHHHHHHHHHHHHHHHHHHTT-EEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh   3 ktieklkkrgvrlsldllgeavlteedadryleayleaiksiekaskalkvleapgvsvklsa..prletaeeeevmeelverlrtlakeakelgvrll 99 
                  +++kl+++g+r+s+d+lgea+lt++da++y+ +y++ai++i+kas+ +  +e pg+s+klsa  pr+++a++++vmeel++rl++l+ +a++++++++
  CTQ27431.1 270 ANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSAlhPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGIN 368
                 68899**89**************************************9999************************************************ PP

                 E----GGGHHHHHHHHHHHHHSCCTTT---EEEEEETTBTTHHHHHHHHHHHHHHTTS-EEEEEE--S-HHHHHHHHHHTT-S.-SB-SSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
      Pro_dh 100 iDaEeaklqeltlelfrklnkepelkdwevvgntyQaYlkdalevlqkllelAeregfrlgvkLVrGAYldsErkraqelgye.spifdtkeeTDanYd 197
                 iDaEea+++e++l+l++kl+ epel++w+++g+++QaY+k+++ v+++l++lA r+++rl+++LV+GAY+dsE+kraq +g+e +p++++k  TD++Y 
  CTQ27431.1 369 IDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPFVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMEGLEgYPVYTRKVYTDVSYL 467
                 *************************************************************************************************** PP

                 HHHHHHHHTTTTEEEEEE-S-HHHHHHHHHHHHHT..T--GGGEEEEEETTSSHHHHHHH......HHTTS-EEEEEEECEHHHHHHHHHHHHHHHH-T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh 198 avaelllenrdeiypavAsHNaesvakalalaeelgqekeksevefqqLlGMadnlsfal......akagynvrkYlPvGpveevlpYLvRRleENtan 290
                 a+a++ll+  + iyp++A+HNa+++a++++la ++       ++efq+L+GM++ l++++      +k ++++r+Y+PvG++e++l+YLvRRl+EN+an
  CTQ27431.1 468 ACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQN---YYPGQYEFQCLHGMGEPLYEQVvgkvadGKLNRPCRIYAPVGTHETLLAYLVRRLLENGAN 563
                 ***********************************...99**********************9999999999*************************** PP

                 T-HHHH CS
                 xxxxxx RF
      Pro_dh 291 ssftrr 296
                 +sf++r
  CTQ27431.1 564 TSFVNR 569
                 ***986 PP

>> Pro_dh-DNA_bdg  DNA-binding domain of Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.0   7.2e-50   3.2e-46       1     112 []     147     259 ..     147     259 .. 0.98

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 7.2e-50
                     -HHHHHHHTT--HHHHHHHHHHHHHHHTSSSHHHHHHHHHHTTTTS-HHHHHHHHHHCTT-GGG----------..-SS----HHHHHHHHHH-H CS
  Pro_dh-DNA_bdg   1 lleallqeyslsseEGvaLmcLAEaLLRvPdaatadaLirdklakgdwkehlgksesllvnaatwgLlltgkll.eekeeeleealkklvkrlge 94 
                     ++++llqe+slss+EGvaLmcLAEaLLR+Pd+at+daLirdk+++g+w++h+g+s sl+vnaatwgLl+tgkl+ +++e++l+++l++++ ++ge
      CTQ27431.1 147 MVQSLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVsTHNETSLSRSLNRIIGKSGE 241
                     5899**********************************************************************999999*************** PP

                     HHHHHHHHHHHHHHHHH- CS
  Pro_dh-DNA_bdg  95 pvirkaveqamkllgeqF 112
                     p+irk+v++am+l+geqF
      CTQ27431.1 242 PLIRKGVDMAMRLMGEQF 259
                     *****************9 PP

>> PRODH  Proline utilization A proline dehydrogenase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.55   2.5e+03      27      42 ..       9      24 ..       8      25 .. 0.87
   2 !   67.6   2.7   1.8e-22   8.2e-19       1      48 []      89     136 ..      89     136 .. 0.99
   3 ?   -3.5   0.0         3   1.3e+04      18      33 ..     147     162 ..     146     172 .. 0.76
   4 ?   -2.3   0.2       1.2   5.3e+03      22      35 ..     286     299 ..     285     300 .. 0.85
   5 ?   -3.2   0.0       2.4   1.1e+04      26      40 ..     485     499 ..     476     501 .. 0.81
   6 ?   -0.1   0.2      0.25   1.1e+03      29      44 ..     702     717 ..     700     719 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.55
       PRODH 27 rlpeaeraairalArk 42
                +l++a+r++i+  A +
  CTQ27431.1  9 KLDDATRERIKSAASR 24
                699*******999976 PP

  == domain 2  score: 67.6 bits;  conditional E-value: 1.8e-22
       PRODH   1 SpLRqaItaayRrpEaecVapLleaArlpeaeraairalArkLvealR 48 
                 S+ R+aItaa+RrpE+++V++Lle+Arlp+++ +++++lA++L+e+lR
  CTQ27431.1  89 SVSRAAITAAWRRPETDAVPMLLEQARLPQPLGEQAHKLAYQLAEKLR 136
                 789********************************************9 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3
       PRODH  18 cVapLleaArlpeaer 33 
                 +V+ Ll++ +l+ +e 
  CTQ27431.1 147 MVQSLLQEFSLSSQEG 162
                 5999***999998875 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.2
       PRODH  22 LleaArlpeaeraa 35 
                 +l +A+l++a+++a
  CTQ27431.1 286 MLGEAALTAADAQA 299
                 899999*9999986 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 2.4
       PRODH  26 ArlpeaeraairalA 40 
                 A+ ++++ aai +lA
  CTQ27431.1 485 ATHNAHTLAAIYQLA 499
                 788889999999998 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.25
       PRODH  29 peaeraairalArkLv 44 
                 p++eraai ++A+ L 
  CTQ27431.1 702 PPQERAAILERAAVLM 717
                 89**********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.43
# Mc/sec: 9117.40
//
Query:       CTQ27432.1  [L=502]
Description: SSS family, major sodium/proline symporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-144  482.0  30.2   1.4e-144  482.0  30.2    1.4  2  SSF        Sodium:solute symporter family
  ------ inclusion threshold ------
       0.56    9.7   4.1       0.16   11.5   0.2    2.1  2  4HB_MCP_1  Four helix bundle sensory module for signal transd


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   0.8      0.85   7.6e+03     243     259 ..       9      25 ..       4      27 .. 0.65
   2 !  482.0  30.2  1.5e-148  1.4e-144       1     406 []      35     437 ..      35     437 .. 0.99

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 0.85
         SSF 243 ivlilvligmisiilfa 259
                 + +i+ ++gm+ i++ a
  CTQ27432.1   9 VTFIVYIFGMVLIGFIA 25 
                 45666667777777765 PP

  == domain 2  score: 482.0 bits;  conditional E-value: 1.5e-148
         SSF   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGlavvllelgalllvlllllllaerlr.....nagalTlpdylskRfkgkr.ilvylsalsl 93 
                 y+l+grsl++fv++ls++as++s+++++Gl+Ga+++sG++++++++g++l+++++++l+a+rlr     n++alTlpdy++ Rf++k+ +l+++sal++
  CTQ27432.1  35 YILGGRSLGPFVTALSAGASDMSGWLLMGLPGAIFLSGISESWIAIGLTLGAWINWKLVAGRLRvhtevNNNALTLPDYFTGRFEDKSrVLRIISALVI 133
                 9*************************************************************************************999********** PP

         SSF  94 llvitlklsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevG..gleslveklkeaapkvvdll 190
                 ll++t+++++++v+ga+l+e+++G++yeta++++aa+t++Yt++GG+lAv++tdt+qa lm+++++++++iv+++vG  g +  v k+k++++  +d+l
  CTQ27432.1 134 LLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATIIYTFVGGFLAVSWTDTVQASLMIFALILTPVIVIISVGgfGDSLEVIKQKSIEN--IDML 230
                 *****************************************************************************7778889999999999..9*** PP

         SSF 191 tpdslkllrdpltalslwlglvlGvaglphilvRflaakdakailkgvlkltivlilvligmisiilfaiklagavpkavgtevgvsniaypeLvvkll 289
                 ++ +      +++++sl +g++lG++g+phil+Rf+aa+++++i+++++++++++il+l g++++++f+i++++ +p ++g+++++++++++eL++ l+
  CTQ27432.1 231 KGLN------FVAIISL-MGWGLGYFGQPHILARFMAADSHHSIVHARRISMTWMILCLGGAVAVGFFGIAYFNNNPSLAGAVNQNAERVFIELAQILF 322
                 *999......7******.********************************************************************************* PP

         SSF 290 pnllaGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkgvlklvelafaglasavlavilla 388
                 ++++aG+ll+++lAa+mstl+++ll++ssa+t+DlYk+++rk+ a +kelv+v+r++vlvv+ +ai+la+++e++ vl lv++a+ag+++a+++v+l++
  CTQ27432.1 323 NPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKAFLRKN-AGQKELVWVGRMMVLVVALVAIALAANPENR-VLGLVSYAWAGFGAAFGPVVLFS 419
                 *******************************************.*******************************.*********************** PP

         SSF 389 lfwkrvneqGAlagliiG 406
                 ++w+r++++GAlag++iG
  CTQ27432.1 420 VMWSRMTRNGALAGMVIG 437
                 ****************99 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   1.7e-05      0.16       2      35 ..       1      34 [.       1      36 [. 0.93
   2 ?   -2.7   0.4      0.42   3.8e+03      10      26 ..     197     213 ..     192     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.7e-05
   4HB_MCP_1  2 lkirkKLillflllallliivGvvGlyslkkink 35
                + i++ +++ f++ ++ ++++G++ ++s+k+ ++
  CTQ27432.1  1 MAISTPMLVTFIVYIFGMVLIGFIAWRSTKNFDD 34
                679**************************99765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.42
   4HB_MCP_1  10 llflllallliivGvvG 26 
                  l+l+ ++++i vG++G
  CTQ27432.1 197 ALILTPVIVIISVGGFG 213
                 45778888888899887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       980  (0.05466); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3689.56
//
Query:       CTQ27433.1  [L=84]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 747.70
//
Query:       CTQ27434.1  [L=144]
Description: Choline dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-40  136.8   0.1    2.3e-40  136.5   0.1    1.1  1  DUF3574   Protein of unknown function (DUF3574)


Domain annotation for each model (and alignments):
>> DUF3574  Protein of unknown function (DUF3574)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   0.1   1.3e-44   2.3e-40       1     103 []      43     144 .]      43     144 .] 0.98

  Alignments for each domain:
  == domain 1  score: 136.5 bits;  conditional E-value: 1.3e-44
     DUF3574   1 rteLyfGlsrpdggkevseaefqrFvdeevtPrFpdGltvldakGqwrdetgalirekskvlillhpdteakearieeireaYkerfqqesVlrvdspa 99 
                 +t+LyfGlsrp+ gk+++ +e+q+Fvd+ vtPrF+dGltv+da+Gqw++++g+++re+sk l+++h +++++ea ie++r+ Yk+rf+qesV+rvd+p+
  CTQ27434.1  43 QTTLYFGLSRPA-GKDITAEEWQQFVDRDVTPRFRDGLTVFDAHGQWLGQNGQVVREQSKALMVIHGHDAQSEAGIEALRQGYKSRFAQESVMRVDQPV 140
                 689********9.77************************************************************************************ PP

     DUF3574 100 kvsF 103
                 +v+F
  CTQ27434.1 141 CVQF 144
                 **99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1256.60
//
Query:       CTQ27435.1  [L=405]
Description: nucleoside (except guanosine) transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-59  200.6  15.1    2.5e-59  200.6  15.1    2.1  2  Nucleos_tra2_C  Na+ dependent nucleoside transporter C-termin
    4.7e-18   65.6   7.2    4.7e-18   65.6   7.2    3.8  3  Nucleos_tra2_N  Na+ dependent nucleoside transporter N-termin
    2.5e-05   24.5   8.2    2.5e-05   24.5   8.2    3.8  4  Gate            Nucleoside recognition


Domain annotation for each model (and alignments):
>> Nucleos_tra2_C  Na+ dependent nucleoside transporter C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   1.8      0.51     3e+03      86     107 ..      94     118 ..      52     200 .. 0.53
   2 !  200.6  15.1   4.2e-63   2.5e-59       1     207 []     204     404 ..     204     404 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.51
                     TT--HHHHHHHHHHHHHH...HTT- CS
  Nucleos_tra2_C  86 eelslelilgyvfaplaf...llGv 107
                     +e  l +i+  v+ p++f   l+G+
      CTQ27435.1  94 SEKGLAFIFLGVLCPIVFisaLIGI 118
                     4444555555555555552223444 PP

  == domain 2  score: 200.6 bits;  conditional E-value: 4.2e-63
                     HHHHHHHHHHHHHHHHHHHHS---S-..........---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--HHHHHH CS
  Nucleos_tra2_C   1 yllaAsvmsapaalaiskllvPeteesktkkkeekeeekanvleaaaegaldglklalniaamliafvalvalinallgwlgsgleelslelilg 95 
                     y++aA ++++++++++ ++++P +  s+++ k ek +e+++++e+++e++l+g+k+a++i+amli+f+al+++inal++ l     +ls+++ilg
      CTQ27435.1 204 YVVAALILNMFSTFIVLSVINPTRPGSEQEIKLEKLHESQSFFEMLGEYILAGFKVAMIILAMLIGFIALISAINALFATL----FGLSFQQILG 294
                     89**********************998899999***********************************************9....48******** PP

                     HHHHHHHHHTT--GGGHHHHHHHHHHHHHT-HHHHHHHHGGGGSSS---HHHHHHHHHHH-S--STHHHHHHHHHHHHH-GGGHHHHHHHHHHHH CS
  Nucleos_tra2_C  96 yvfaplafllGvpwedalkvgsllGtKlvlnefvayqeLsklkkkgelserseliatyaLcgFanfssigiqiGglgalaperrkdiaklglkal 190
                     yvf+pla+l+G+p +dal++gs+++tKlv+nefva++eL+k++  +++++r   i++++L++Fanf+sigi+ G++++l++ + + ++++gl+++
      CTQ27435.1 295 YVFYPLAWLIGIPLSDALNAGSIMATKLVANEFVAMIELQKIA--ASMTPRGLGILSVFLVSFANFASIGIIAGAIKGLNEPQGNIVSRFGLRLV 387
                     *****************************************98..9************************************************* PP

                     HHHHHHHHHHHHHHHHT CS
  Nucleos_tra2_C 191 laGtlasllsAaiaGll 207
                     +++tl+sllsA++aGl+
      CTQ27435.1 388 YSATLVSLLSASFAGLV 404
                     ***************85 PP

>> Nucleos_tra2_N  Na+ dependent nucleoside transporter N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   7.2   7.9e-22   4.7e-18       2      74 .]      21      93 ..      20      93 .. 0.98
   2 ?    0.6   0.1      0.15   8.7e+02      21      41 ..     201     221 ..     183     255 .. 0.78
   3 ?   -1.5   2.8      0.69   4.1e+03      28      55 ..     261     288 ..     240     298 .. 0.57

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 7.9e-22
                    HHHHHHHHHHHT-S-GGG--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG CS
  Nucleos_tra2_N  2 GllvllliawllSenrkainwrtVigglllQfvlAlfvlktpagrdvfkalsdlvqalldfakaGasFvFGsl 74
                     l+v+l++awl+S +r++i++r+++  ++++++lA+f+l+ + g  ++k +s ++++ll+fa +G++FvFG++
      CTQ27435.1 21 ALAVILALAWLVSYDRQKIRIRYILQLIIIEIALAFFFLHAESGLWLVKNISGFFASLLGFAAEGTNFVFGGM 93
                    799********************************************************************85 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.15
                     -HHHHHHHHHHHHHHHHHHHT CS
  Nucleos_tra2_N  21 nwrtVigglllQfvlAlfvlk 41 
                       ++V+++l+l+++  ++vl 
      CTQ27435.1 201 DAKYVVAALILNMFSTFIVLS 221
                     456777777777777777765 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.69
                     HHHHHHHHHHHHHTSHHHHHHHHHHHHH CS
  Nucleos_tra2_N  28 glllQfvlAlfvlktpagrdvfkalsdl 55 
                     +++l ++++++ l   +   +   ++  
      CTQ27435.1 261 MIILAMLIGFIALISAINALFATLFGLS 288
                     3444444444444444444444444444 PP

>> Gate  Nucleoside recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.6      0.36   2.2e+03      20      58 ..      49      78 ..      16     101 .. 0.46
   2 !   24.5   8.2   4.2e-09   2.5e-05       2     110 ..     103     201 ..     102     223 .. 0.90
   3 ?    0.6   0.2      0.11   6.8e+02      47      68 ..     206     227 ..     198     267 .. 0.68
   4 ?    0.2  10.2      0.15   8.9e+02       8     108 ..     263     367 ..     257     371 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.36
        Gate 20 s............ssllgrigkllepvfaplgqeldwkatvslltgfaake 58
                                                   ++   v  ++gf+a  
  CTQ27435.1 49 IieialaffflhaE---------------------SGLWLVKNISGFFASL 78
                03333333333342.....................3333333333333322 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 4.2e-09
        Gate   2 lkagpiillasiliwflssssllgrigkllepvfap...lgqeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpksalafllfvllytp 97 
                 l ++  i+++s+li++l++  +l ++ ++++ ++++   +g+ ++ +a+ sl++g++++ ++++ +               d    +l ++  ++++t+
  CTQ27435.1 103 LGVLCPIVFISALIGILQHWRILPIFIRVIGTLLSKvngMGKLESFNAVSSLILGQSENFIAYKGV-------------LGDLSSRRLFTMAATAMSTV 188
                 678999******************************85555****************999999988.............4555666799********** PP

        Gate  98 cvatlavivrelg 110
                 +++++++++ +l 
  CTQ27435.1 189 SLSIVGAYMTMLD 201
                 *******998875 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.11
        Gate  47 tvslltgfaakevvvgtlgtly 68 
                 +++l++++++  +v++ ++ ++
  CTQ27435.1 206 VAALILNMFSTFIVLSVINPTR 227
                 5677888888888888777666 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.15
        Gate   8 illasiliwflss...........ssllgrigkllepvfaplg..qeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpks.alafllfv 92 
                 il+++i    l s            s+ +++g ++ p+   +g   ++  +a   + t ++a+e v+ +  +         ++   tp+   +  +++v
  CTQ27435.1 263 ILAMLIGFIALISainalfatlfgLSFQQILGYVFYPLAWLIGipLSDALNAGSIMATKLVANEFVAMIELQK--------IAASMTPRGlGILSVFLV 353
                 444444333333345558888***8888888888888888888777789999999999999*****9987666........357777777556666666 PP

        Gate  93 llytpcvatlavivre 108
                 ++++  +a++++i++ 
  CTQ27435.1 354 SFAN--FASIGIIAGA 367
                 6665..8888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1107  (0.0617435); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2958.06
//
Query:       CTQ27436.1  [L=276]
Description: Ferrous iron permease EfeU [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-73  245.5  13.3    8.3e-73  245.2  13.3    1.0  1  FTR1             Iron permease FTR1 family
    2.8e-05   23.2  20.2    2.8e-05   23.2  20.2    1.4  1  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.02   14.9   9.7      0.014   15.4   8.0    1.7  1  Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
      0.058   13.2   0.6       0.99    9.3   0.2    2.8  2  Flp_Fap          Flp/Fap pilin component
      0.093   12.5   0.0        0.2   11.5   0.0    1.5  1  IDEAL            IDEAL domain
       0.83    9.9   6.7        9.9    6.4   1.1    3.0  2  HemY_N           HemY protein N-terminus
        2.1    8.0  14.0        0.3   10.7   0.2    2.8  2  DUF4131          Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> FTR1  Iron permease FTR1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.2  13.3   3.2e-76   8.3e-73       1     294 [.       1     264 [.       1     275 [. 0.96

  Alignments for each domain:
  == domain 1  score: 245.2 bits;  conditional E-value: 3.2e-76
        FTR1   1 lfaiflvvlregleaslivsvllallkqtqretdklqvwagialavllalaigqafasitaalqkdkalieeellegvlsliavvviswmilwmrrvgk 99 
                 +f  fl++lreglea+livs + ++lk+tqr+     +w+g++la +l+l++g++++++t+++++     e+el+eg++++iavv+++wm++wmr v++
  CTQ27436.1   1 MFVPFLIMLREGLEAALIVSLIASYLKRTQRGNWIGVMWIGVILAAALCLGLGIFINETTGEFPQ----REQELFEGIVAVIAVVILTWMVFWMRNVSR 95 
                 8999************************************************************8....****************************** PP

        FTR1 100 klkeeveqklakavaeiknrekaaqkgekgsekwalfilsFlivlREGlEavLfvaaivaytvkrvsalilgvvlGaliavvlglliyrglvklslqsf 198
                 ++k+++eq ++ka++++            ++++wal++++F++v REGlE v+f+ a+++++v   ++++lg++lG+++a+vlg+liy+g+++l+l  f
  CTQ27436.1  96 NVKQQLEQAVDKALQRG------------NHHGWALVMMVFFAVAREGLESVFFLLAAFQQDV--GIWPPLGALLGLATAIVLGFLIYWGGIRLNLGVF 180
                 **************966............899*******************************..5********************************* PP

        FTR1 199 filegflLllvaagLfsvgtlellekaeacngkdyiefkkskslskisllslllvaflaveregleivlaliGwantgplglivyaavwlvvlill 294
                 f ++++++llvaagL +++  +++e++++ n +++ +f+ s+ ls+++l+++ll++++++++ +   v+ ++++  +         ++ + vl++l
  CTQ27436.1 181 FKWTSLFILLVAAGLAAGAIRAFHEAGLW-NLFQDTAFDLSNVLSTHTLFGTLLEGIFGYQETP--SVSEVAVYLLY---------LIPALVLFAL 264
                 *****************************.999*******************************..********999.........5666666655 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2  20.2   1.1e-08   2.8e-05      97     297 ..       9     203 ..       1     237 [. 0.71

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.1e-08
       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.........Wravfyilaivsllafvlfllllpeepperkrkspke 186
                 l +g+ ++++++lia + ++++rg  ig++ +g+ l+a+l  +lg ++ +  g         ++++  ++a+v l ++v   ++++   ++ k +   e
  CTQ27436.1   9 LREGLEAALIVSLIASYLKRTQRGNWIGVMWIGVILAAALCLGLGIFINETTGefpqreqelFEGIVAVIAVVILTWMV---FWMRNVSRNVKQQL--E 102
                 55688899*****************************************9999************************77...44433333333332..2 PP

       MFS_1 187 eekgtgpaplvpawkallkdpvlwillialllfffgfsg...lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllall 282
                 +        +v+   + + + + w +l+++++f+++  g   +++ll  + q++ g+     +g+ll+l+ ++++++ + +g +   lg  + ++  ++
  CTQ27436.1 103 Q--------AVD-KALQRGNHHGW-ALVMMVFFAVAREGlesVFFLLAAF-QQDVGIW--PPLGALLGLATAIVLGFLIYWGGIRLNLGVFFKWTSLFI 188
                 2........233.22334444447.3333333333555545577777776.6666655..667777999999999999999999988888666665555 PP

       MFS_1 283 llllaalglallavt 297
                 ll++a l+   + ++
  CTQ27436.1 189 LLVAAGLAAGAIRAF 203
                 555555555555544 PP

>> Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   8.0   5.5e-06     0.014      20     151 ..      45     171 ..      16     185 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5.5e-06
  Abhydrolase_9_N  20 saaiGYglGvllawlvrrllrlpepsrrvrrrlrlalavvalvvllvalvlaarwQrelralmgaeplgaaeyllvllvallvfalllllgrll 113
                      +aa+  glG++++  +       e ++r ++ ++ ++av+a+v+l++++++  +  r++++ ++ +  +a++       al++++++ ++ ++l
       CTQ27436.1  45 AAALCLGLGIFINETTG------EFPQREQELFEGIVAVIAVVILTWMVFWMRNVSRNVKQQLEQAVDKALQRGNHHGWALVMMVFFAVAREGL 132
                      33344444455554444......55799999*************************************************************** PP

  Abhydrolase_9_N 114 ralvrllarllgrv.lprrvaavlgvlvvvvlvvllvdg 151
                      + ++ lla+  + v +++++ a+lg+++++vl +l+  g
       CTQ27436.1 133 ESVFFLLAAFQQDVgIWPPLGALLGLATAIVLGFLIYWG 171
                      ********9999999****************99998766 PP

>> Flp_Fap  Flp/Fap pilin component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.18   4.6e+02      12      22 ..      14      24 ..      12      39 .. 0.82
   2 ?    9.3   0.2   0.00039      0.99      16      42 ..      74     104 ..      74     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.18
     Flp_Fap 12 EYgLIaaliAv 22
                E +LI+ liA 
  CTQ27436.1 14 EAALIVSLIAS 24
                55899999997 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00039
     Flp_Fap  16 IaaliAvvii....ayvttlgtaLktkFtki 42 
                 I+a+iAvvi+    + + +++ ++k+ +++ 
  CTQ27436.1  74 IVAVIAVVILtwmvFWMRNVSRNVKQQLEQA 104
                 777888887777779999**99999998876 PP

>> IDEAL  IDEAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.7e-05       0.2      11      27 ..      98     114 ..      92     115 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.7e-05
       IDEAL  11 rekLlreIDeALdnrDk 27 
                 +++L +  D+AL++++ 
  CTQ27436.1  98 KQQLEQAVDKALQRGNH 114
                 89*************96 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.1    0.0038       9.9      24      61 ..      74     111 ..      67     130 .. 0.68
   2 ?    5.3   0.4    0.0084        22       4      41 ..     167     204 ..     165     214 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0038
      HemY_N  24 vllfvllylllrllrlllrlparvrrwrrrrrerkare 61 
                 +++++++++l +++ ++ +++++v++  ++   ++ ++
  CTQ27436.1  74 IVAVIAVVILTWMVFWMRNVSRNVKQQLEQAVDKALQR 111
                 56777777777777777777666666554444444333 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0084
      HemY_N   4 liawggyrietslvvavlllvllfvllylllrllrlll 41 
                 li+wgg r+++ + +    l++l+v++ l+  ++r++ 
  CTQ27436.1 167 LIYWGGIRLNLGVFFKWTSLFILLVAAGLAAGAIRAFH 204
                 8**************99999999999999999888876 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00012       0.3       2      61 ..      34     103 ..      32     115 .. 0.58
   2 ?    1.9   6.2     0.062   1.6e+02       2      42 ..     149     197 ..     146     238 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
     DUF4131   2 glplalvllalllllllllllllrr.......rprrrv..llllllllllallgfalrapqpna.ndlsq 61 
                 ++++ ++ ++l+++l+l l+++ ++       r +  +  +++++++ +l +++f+ r  ++n+ ++l+q
  CTQ27436.1  34 WIGVMWIGVILAAALCLGLGIFINEttgefpqREQELFegIVAVIAVVILTWMVFWMRNVSRNVkQQLEQ 103
                 5555555566666666666666555798877655555566666666666666666666555555233444 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.062
     DUF4131   2 glplalvllalllllllllllllrr..........rprrrvllllllllll 42 
                 + pl ++l ++ +++l +l+++             +++  ++ll+++ l++
  CTQ27436.1 149 WPPLGALLGLATAIVLGFLIYW--GgirlnlgvffKWTSLFILLVAAGLAA 197
                 4455555555555555555554..234666665422222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1065  (0.059401); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 1916.68
//
Query:       CTQ27437.1  [L=375]
Description: ferrous iron transport binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-44  151.7   2.4      4e-44  151.2   2.4    1.1  1  Peptidase_M75  Imelysin
      9e-25   86.8   0.1    1.6e-24   86.0   0.1    1.3  1  Cupredoxin_1   Cupredoxin-like domain


Domain annotation for each model (and alignments):
>> Peptidase_M75  Imelysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2   2.4   4.4e-48     4e-44       1     287 [.     135     367 ..     135     370 .. 0.93

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 4.4e-48
                    HHHHHHHHHHH.HHHHHHHHHHHHHCB-HHHHHHHHHHHHHHHHHHHHHCCG-TCHHHH.HHHHH-SS-TCHHHHHHHHHHHHHSTT--TCCCCGS CS
  Peptidase_M75   1 alaaYedllta.aeaLqsavdallaaptaanleaAreawlaarvayeqsevfrfgpvdawegqvnaWPldeglldyvvdardadedaitpellase 95 
                    a++aY++++ta +++L+s ++a+++a++a++ e+A++ ++ +r++ye++e++++                +++ld  +dar   ed+++++   +e
     CTQ27437.1 135 AITAYKAYVTAeTAQLVSGTKAFTDAVKAGDIEKAKALYAPTRQHYERIEPIAE---------------LFSDLDGSIDAR---EDDFEKK---AE 209
                    6899**************************************************...............9***********...9999999...56 PP

                    GGGGSHHHHHHHHHCCTTSH...TTTS..HHHHHHHHHHHHHHHHHHHHHHHT...CHHHHHCCHSHHHHHHHHHCCHHHHHHHHHHCTTHHHHTS CS
  Peptidase_M75  96 anvvtGfhaiEflLfgqdlgagtrpvtdyleylkavaallvsdlqelaaawqpetegnyraaltasekealeeilngmgslldelaserikvplsa 191
                    +  +tGfh++E+ Lfg++ +          +++++ a++l+sd+ el++++ + ++              +++++ g++ l++e+a ++i+     
     CTQ27437.1 210 DPKFTGFHRLEKALFGDN-S---------VKGMEKYADQLNSDVLELQKRISELAF-------------PPSKVVGGAAGLIEEVAASKIS----- 277
                    799***************.7.........9*********************98877.............*********************9..... PP

                    CHHCHSTTTTTT-HHHHHHHHHHHHHHHHCTS.SCCHHHHHCCCSCHHHHHHHHHHHHHHHHHHCSSS..SGG..GGCT-HHHHHHHHHHHHHHHH CS
  Peptidase_M75 192 pdpedeedcfsdnsladiqanleGirnvylgesgaslrdlveaadpalaeqldaalaaleaalaaiaa..pfd..qaigdaegraliqaaidaLse 283
                        +eed++s+++l+d+qan++G+++++     ++lr+ ++++++al +++da+++++++ l+++++   f+  +++++a+++al    i+ L+e
     CTQ27437.1 278 ----GEEDRYSHTDLWDFQANIDGAQKIV-----DLLRPQLQKENSALLAKVDANFKKVDSILSKYRTkdGFEtyDKLTTADRNALKGP-ITTLAE 363
                    ....*************************.....********************************87453336688888888888444.777776 PP

                    HHHH CS
  Peptidase_M75 284 ltsl 287
                     +++
     CTQ27437.1 364 DLAQ 367
                    6655 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.1   1.7e-28   1.6e-24       4     104 .]      13     115 ..      10     115 .. 0.95

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 1.7e-28
  Cupredoxin_1   4 alavllllsskaaaaaektveitvkdggfePskievkagekvklkiknkdktpeefesed....lgeekvlapgktttitiaplkpGeYeftcdmhm 96 
                    +a+ll ++  a+aa+ ++v++tv+d+++eP +++v+ag+ +++ i+n+++++ e+e+ +    ++e++++apg t+++t a+l+pGeY++tc++  
    CTQ27437.1  13 TVAALLSSAFGAQAADIPQVKVTVNDKQCEPMQVTVNAGK-TQFIIQNHSQKALEWEILKgvmvVEERENIAPGFTQKLT-ANLQPGEYDMTCGLLT 107
                   5677778888999**************************9.**********************999**************.7*************** PP

  Cupredoxin_1  97 dakGkliV 104
                   ++kGkliV
    CTQ27437.1 108 NPKGKLIV 115
                   *******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2711.52
//
Query:       CTQ27438.1  [L=427]
Description: heme-binding periplasmic protein involved in iron transport; Tat-dependent exported [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   8.1e-118  393.1   0.0   9.5e-118  392.9   0.0    1.0  1  Dyp_perox   Dyp-type peroxidase family
    0.00025   20.7   0.4    0.00044   20.0   0.4    1.4  1  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> Dyp_perox  Dyp-type peroxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.9   0.0  1.1e-121  9.5e-118       1     325 [.      65     413 ..      65     415 .. 0.98

  Alignments for each domain:
  == domain 1  score: 392.9 bits;  conditional E-value: 1.1e-121
                 BSSSSS-C-SEEEEEEEEE-TTCHHHHHHHHHHHHHHHHHHHHCCCC........SCSSHCTCCCTHSTTTT-EEEEEEEHHHHH.HTTSCGGS-TTCS CS
   Dyp_perox   1 qagiltplqaaaifvaldvkakdkakleallrkltarverLtageka........ppadtgealkarkpdsrLtvtvgiGsslfd.rlglkekrpkeLk 90 
                 qagiltp+qa++++va+dv a dka+le+l+r lt+r+++Lt+g+ a        pp+d+g+++   + +++Lt+tv++G+slfd r+gl++k pk+L+
  CTQ27438.1  65 QAGILTPQQASMMLVAFDVLAADKADLERLFRLLTQRIAFLTQGGPApdtpnprlPPMDSGILGPWIA-PDNLTITVSVGHSLFDeRFGLADKAPKKLQ 162
                 89*************************************************************99998.5***************9************* PP

                 ----ETTTTEEGGGS--SEEEEEEESSHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEHC.....TSTTCB-TTSSBSSTTS--TCHHHHHH..HS-... CS
   Dyp_perox  91 plpelkndkldapstdgDlliqiraeredvafealrailkafgdavevrdevkGFrsss.....gkvtarnLlGFvDGTeNpkgeeakeav..vli... 179
                 p+++++nd+lda+ ++gDll+qi+a+++d++++alr+++k++ d ++vr++++GF+s+s     gk+t++nLlGF+DGT+Np++++ + ++  v++   
  CTQ27438.1 163 PMTRFPNDSLDAALCHGDLLLQICANTQDTVIHALRDVIKHTPDLLSVRWKREGFISDSaarskGKETPINLLGFKDGTANPASHDSALMDkvVWVtad 261
                 ********************************************************99899999************************9998888899* PP

                 CSSSGGGTT-EEEEEEEEEE-HHHHTTS-HHHHHHHHTB-TTT--BTTTTSTTS......TTTGSSS-TTSHHHHHSGE.STTTEC--EE--EEEEEEE CS
   Dyp_perox 180 kdedewaagGsYvvvrkirhdleaWdrlslkeQedviGRrKedgaeldddkead......dseekvipkdsHvrlaklk.edgkglkilRralsygeGl 271
                 +de++w+ gGsY++ r i++++e+Wdr++lkeQ++++GR+K++ga+l++++e+d      d++++vi+ dsH+rla+++ ++ +++ ++Rr++sy+ G+
  CTQ27438.1 262 QDEPAWTVGGSYQAARIIQFHVEFWDRTPLKEQQTIFGRDKHTGAPLGMKNEHDtpdyskDPNGEVIALDSHIRLANPRtPETQSSLMMRRGYSYSLGV 360
                 *******************************************************************************9999**************** PP

                 -TTSSCEEEEEEEEEESSCHHCHHHHHHHHSCB-GGGGCEEEEEEEEEEE-BHH CS
   Dyp_perox 272 dkvgkldaGllFiaYqrtlenteqmlqrmlgktdaLlefikavtgglFfapsgv 325
                 +++g+ld+GllF++Yqr+le+++ ++q++l +++aL+e++k+++gg+Ff+++gv
  CTQ27438.1 361 TNAGQLDMGLLFVCYQRDLEKGFLTVQKRL-NGEALEEYVKPIGGGYFFVLPGV 413
                 ******************************.*********************97 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.4   4.9e-08   0.00044       2      24 ..      12      35 ..      11      37 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.9e-08
  TAT_signal  2 lSRRdFLKgsAAaaAAaa.lggca 24
                 SRR +LKg +A++ A+a +ggc 
  CTQ27438.1 12 PSRRRLLKGIGALGGALAiTGGCP 35
                7*************7777588996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3225.04
//
Query:       CTQ27439.1  [L=352]
Description: putative phosphate starvation-inducible protein with ATPase activity [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-77  258.6   0.0    4.6e-77  258.1   0.0    1.2  1  PhoH       PhoH-like protein
    1.3e-08   34.8   0.0    2.9e-08   33.7   0.0    1.6  1  AAA_30     AAA domain
    3.5e-05   24.1   0.1    0.00032   21.0   0.1    2.1  1  AAA_22     AAA domain
    7.5e-05   23.1   0.0      0.033   14.5   0.0    2.2  2  AAA_19     AAA domain
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.023   14.4   0.0    1.6  1  IstB_IS21  IstB-like ATP binding protein
      0.028   14.2   0.1        1.7    8.4   0.0    2.7  3  DEAD       DEAD/DEAH box helicase
      0.073   13.1   0.0       0.22   11.5   0.0    1.8  2  ResIII     Type III restriction enzyme, res subunit
       0.15   11.3   1.4        1.2    8.3   0.1    2.6  3  DUF2075    Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.1   0.0   2.1e-80   4.6e-77       2     204 ..     147     351 ..     146     352 .] 0.98

  Alignments for each domain:
  == domain 1  score: 258.1 bits;  conditional E-value: 2.1e-80
                 ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHHHH CS
        PhoH   2 ikpktkeQkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpaveageelGflpgdleekvdpylrplydaLkdllgaekvekll 100
                 i++++++Q++yl+a+++++++fa+G+aG+GKt+++ a a+eal +k+v+rii+trp+++a+e+lGflpgd++ek++py+rp+yd L + lga+ ++++l
  CTQ27439.1 147 IEARNEAQAHYLNAIDNKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVKRLGASFMQYCL 245
                 899**********************************************************************************************99 PP

                 ..HTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------------THHHHHHTTT-TTEEEEE--GGG----HHH CS
        PhoH 101 ..ekgkievaplaymRGrTlndafvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlpkgkksGlaealevlknvegieivelkkkdvvRhplv 197
                   e gk+e+ap+aymRGrT+++a+vilDEAQn+t +qmkmfltRlGen +v+v+Gd+tq+dlp+g +sGl++al +++++e i+iv+++++d+vR+ l+
  CTQ27439.1 246 rpEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPSGVRSGLSDALARFEEDEMIGIVRFTTDDCVRSALC 344
                 66789********************************************************************************************** PP

                 HHHHHHH CS
        PhoH 198 kkivkay 204
                 ++++kay
  CTQ27439.1 345 QRTLKAY 351
                 ****998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.3e-11   2.9e-08       3     159 ..     151     335 ..     149     347 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.3e-11
      AAA_30   3 naeQaaavealltsgdrvavltGpAGtGKttal..kalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk.................. 81 
                 n+ Qa+ ++a+   ++++ ++tG AG GKt +   ka++++++++  r+i+  p  +a ++L+   g  a+  a + +                     
  CTQ27439.1 151 NEAQAHYLNAID--NKQLIFATGEAGCGKTWISaaKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYdvlvkrlgasfmqyclrp 247
                 677888887664..4459************86511445555666689****************877777777776665554778888888899999999 PP

      AAA_30  82 ............grarlepgtllivDEagmvdtkqlaallkaaekagakvilvGDerQ..lasVeaGgvlrdlveaagigtaeLtevvRqke 159
                              r r  ++ ++i DEa  v ++q++ +l+++ + +++vi+ GD  Q  l+s  + g+ + l   a+++  e+  +vR++ 
  CTQ27439.1 248 eigkveiapfayMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGE-NVTVIVNGDITQcdLPSGVRSGLSDAL---ARFEEDEMIGIVRFTT 335
                 99********9844466777***********************99.**********99555666666666666...4677788888888865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   1.4e-07   0.00032       4     114 ..     163     288 ..     160     305 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.4e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee...........erpevvfvtlpsst..sskdllrellralglelkaerlsseellealeqalrar 89 
                 ++++++ tGe+G+GKT+  +  + ++ ++++ ++           e+ +++  +++++     + ++  l++ lg +   + l+ e     ++  +  r
  CTQ27439.1 163 NKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRiivtrpvlqadEDLGFLPGDIAEKFapYFRPVYDVLVKRLGASFMQYCLRPEIGKVEIAPFAYMR 261
                 7899****************9999999987766677555555444444444444443333344444444444444433336666666666666666666 PP

      AAA_22  90 av...ielliiDEaqhlrseealeeLrs 114
                 ++    +++i+DEaq++ ++++++ + +
  CTQ27439.1 262 GRtfeNAVVILDEAQNV-TAAQMKMFLT 288
                 669999***********.7555555433 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0047        11       9      48 ..     163     200 ..     154     218 .. 0.78
   2 !   14.5   0.0   1.5e-05     0.033      99     140 ..     264     304 ..     229     309 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0047
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillv 48 
                 ++++++ t+ +G+GKT +  ++ a+++  ++v  ++i++ 
  CTQ27439.1 163 NKQLIFATGEAGCGKTWISAAKAAEALIHKDV--DRIIVT 200
                 56788899*********999998888877766..566665 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.5e-05
      AAA_19  99 klqeeellivDEfqdvdelqyrLlkallgekkklllvGDpdQ 140
                 ++ e++++i DE+q+v+  q++++ + lge+ ++++ GD+ Q
  CTQ27439.1 264 TF-ENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQ 304
                 44.6679**********6666665555558866*******99 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     1e-05     0.023      33      72 ..     150     189 ..      96     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
   IstB_IS21  33 rkvkeLatlsfiekkenivllGpsGvGKshlaialgveav 72 
                 r+ ++   l+ i++k+ i  +G +G GK+++++a + ea 
  CTQ27439.1 150 RNEAQAHYLNAIDNKQLIFATGEAGCGKTWISAAKAAEAL 189
                 44455566777999*******************9988875 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.75   1.7e+03     136     164 ..      62      90 ..      60      92 .. 0.84
   2 ?    8.4   0.0   0.00077       1.7       2      55 ..     152     202 ..     151     207 .. 0.84
   3 ?    2.4   0.0     0.053   1.2e+02     124     149 ..     269     294 ..     260     304 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.75
                 TTTHHHHHHHHHHSHHHCTTSTTTSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 136 qgfsdfinrilnqlpqitcdgklqrqviv 164
                 qg +  i r +++++   cd ++qr+v+ 
  CTQ27439.1  62 QGSQTSIVRAHSRVDVDACDVNQQRKVLS 90 
                 5778889999************9988765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00077
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkaliveP 55 
                 + Qa+ +++i +++ +++ +e G GKT + +  + +++++   k+  ++++  P
  CTQ27439.1 152 EAQAHYLNAIDNKQLIFATGEAGCGKTWISAAKAAEALIH---KDVDRIIVTRP 202
                 57999******999***************99999999986...55556666555 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.053
                 EEEEETHHHHHHTTTHHHHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 124 flVlDEadrlldqgfsdfinrilnql 149
                 +++lDEa+++   +++ f+ r+ +++
  CTQ27439.1 269 VVILDEAQNVTAAQMKMFLTRLGENV 294
                 79*********999999999987766 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.6e-05      0.22      14      58 ..     156     198 ..     114     211 .. 0.76
   2 ?   -1.9   0.0       1.3     3e+03     133     146 ..     267     280 ..     259     296 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.6e-05
                 HHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EE CS
      ResIII  14 nlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkeekfl 58 
                   l+++  ++++ ++   + G+GKT+++ ak++e+l +k + ++++
  CTQ27439.1 156 HYLNAI--DNKQLIFATGEAGCGKTWISaAKAAEALIHK-DVDRII 198
                 344444..355556678899********78888888876.434554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
                 -SEEEEETGGGTTS CS
      ResIII 133 fdviiiDEaHrlga 146
                 + v+i DEa +++a
  CTQ27439.1 267 NAVVILDEAQNVTA 280
                 34999999977777 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.32   7.1e+02      96     123 ..     103     130 ..      68     135 .. 0.76
   2 ?    8.3   0.1   0.00055       1.2       1      26 [.     164     192 ..     164     301 .. 0.64
   3 ?    1.8   0.0     0.052   1.2e+02      91     140 ..     269     282 ..     258     325 .. 0.60

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.32
     DUF2075  96 EAhrlltksdqaekqseenqlkelmkra 123
                 EA r+l + ++ +kq+ee+ +++l++ +
  CTQ27439.1 103 EAKRVLRRDSRSHKQREEESVTSLVQMS 130
                 7777777777777777777777776655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00055
     DUF2075   1 kavvlVtGvaGtGKtvvllnllael...e 26 
                 k++++ tG+aG GKt +  + +ae+   +
  CTQ27439.1 164 KQLIFATGEAGCGKTWISAAKAAEAlihK 192
                 6899************9888877775542 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.052
     DUF2075  91 vvivDEAhrlltksdqaekqseenqlkelmkrakvvvalvDegQelntge 140
                 vvi DEA+ ++                                      +
  CTQ27439.1 269 VVILDEAQNVTA------------------------------------AQ 282
                 666666666555....................................33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2606.00
//
Query:       CTQ27440.1  [L=214]
Description: putative DsbA oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-18   67.0   1.7    3.6e-17   62.8   1.7    2.0  1  DSBA           DSBA-like thioredoxin domain
    4.7e-05   23.3   0.0     0.0089   16.0   0.0    2.3  2  Thioredoxin    Thioredoxin
    5.2e-05   23.5   0.1      9e-05   22.7   0.1    1.3  1  Thioredoxin_4  Thioredoxin
     0.0022   18.2   0.1       0.72   10.1   0.0    2.3  2  QSOX_Trx1      QSOX Trx-like domain
  ------ inclusion threshold ------
      0.049   14.1   0.0       0.17   12.4   0.0    1.8  1  Thioredoxin_2  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   1.7     1e-20   3.6e-17       2     186 ..      47     196 ..      46     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 1e-20
                 EEEEEBTTBHHHHHHHHHHHHHHHHC....CTEEEEEEE-SSSCHHHHCT.S.GGGSHHHHHHHHHHHHHHHHHHT....GGSSHHH.HHHHHHHHHHH CS
        DSBA   2 vdeffDvlCPyCylgkerleklaars....pdvkvvlrpfelagakkasgnvgpselpeklkylledlkrlaeaegiplrfpkdklk.nstraarllla 95 
                 ++eff+++C+ Cy+++er++   a++    +d+k+ +++++ +g                                         l+ ++t a++++++
  CTQ27440.1  47 LVEFFSFYCGPCYAFAERINVDTAIRkrlpDDMKLEKYHVSQMGP----------------------------------------LGpALTEAWAVAQY 105
                 579****************9988888889777*************........................................8889********** PP

                 HHHHHGHHHHHHHHHHHHHTSSS-TSSHHHHHHHHHHTTS.HHHHHHHHTSHHHHHHHHHHHHHHHHTT-SSSSEEEETTC....EEEESSSSHH CS
        DSBA  96 agaeglaekvvrelfealwsegqaitddqellevaekaGldaeeldealeseavkeavrentaaaqslgvtGvPtvvvdgk....rmvfGadrld 186
                 ag  g   kv + lfe l+  +++i++++++++v++++G+  e+++e+ +++ vk  +++++++ ++++v G+P ++v gk    ++    d++d
  CTQ27440.1 106 AGVDG---KVEKLLFEGLQV-KRDIKTAADIVKVFNQLGITSEKYAEMQSNFMVKALIARQDNLVEKMKVHGTPSFYVSGKyhinNASLAQDDYD 196
                 ****9...899999999988.99*********************************************************944444444455555 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.5e-06    0.0089      14      41 ..      41      66 ..      27      95 .. 0.69
   2 !    5.2   0.0    0.0056        20      52      82 ..     153     183 ..     137     204 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.5e-06
                 HTTTSSEEEEEEE-TTSHHHHCHHHHHH CS
  Thioredoxin 14 vakekklvlveFyApwCghCkalaPele 41
                 v  ++ + lveF++ +Cg+C a+a +++
   CTQ27440.1 41 V--KQPPPLVEFFSFYCGPCYAFAERIN 66
                 3..35889**************998875 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0056
                  EEEEEETTTSHHHHHHTT-SSSSEEEEEETT CS
  Thioredoxin  52 klakvdvdenedlakkyevegiPtlklfkng 82 
                   ++k  +  +++l++k++v+g P +++  + 
   CTQ27440.1 153 FMVKALIARQDNLVEKMKVHGTPSFYVSGKY 183
                  456777788999************9876544 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   2.5e-08     9e-05      14     156 ..      44     189 ..      40     200 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.5e-08
                    SEEEEEEE-TT-HHHHHHHHHHH..HHHHHHHHTT.SE.EEEEEE-...---S.TTTHHHHHHHTT--TTHHHHHHHHHHHHTHHHHTTS-.HHHH CS
  Thioredoxin_4  14 pvtvieyedlrCphCakfeeeve..klleeyidtG.kv.kfiirdf.pldkek.eslkaamaarcageespeaflaikallysqqeewaes.lkel 102
                    p  ++e+ ++ C  C +f+e ++    +++ + ++ k+ k+ + ++ pl +   e++  a++a+  g++++  f++++    +++ + a++ +k +
     CTQ27440.1  44 PPPLVEFFSFYCGPCYAFAERINvdTAIRKRLPDDmKLeKYHVSQMgPLGPALtEAWAVAQYAGVDGKVEKLLFEGLQV---KRDIKTAADiVKVF 136
                    56689***************99886677777766666623444444555555544555555555555554333333322...22222222223444 PP

                    H.....HHHHHTS-------HHHHHHHHHHHHHHT--SS-EEEETTEEE-TT-- CS
  Thioredoxin_4 103 aaealdkdekfeacleeekldalveaeskeakkagiestPtfiingekveepqt 156
                     ++ + + ek  +  ++  ++al++++++ ++k+++ +tP+f++ g+   ++ +
     CTQ27440.1 137 NQL-GITSEKYAEMQSNFMVKALIARQDNLVEKMKVHGTPSFYVSGKYHINNAS 189
                    444.444555554446668999999999999***************98655544 PP

>> QSOX_Trx1  QSOX Trx-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0046        16      36      68 ..     104     136 ..     101     146 .. 0.79
   2 !   10.1   0.0    0.0002      0.72      49      79 ..     150     180 ..     146     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0046
   QSOX_Trx1  36 sYiGrevildllqyenvavrRvlkaeeglvekl 68 
                  Y G +   + l +e+++v+R +k+ +++v+ +
  CTQ27440.1 104 QYAGVDGKVEKLLFEGLQVKRDIKTAADIVKVF 136
                 5788888889999**************999754 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0002
   QSOX_Trx1  49 yenvavrRvlkaeeglveklgvtsvpslyll 79 
                  +n +v+  +  +++lvek++v  +ps y+ 
  CTQ27440.1 150 QSNFMVKALIARQDNLVEKMKVHGTPSFYVS 180
                 68999***********************984 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.7e-05      0.17      12      86 ..      50     179 ..      42     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.7e-05
  Thioredoxin_2  12 ftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkd.......................................... 65 
                    f +  C+ C ++ + +  + ++++r     l ++++ +  +++++     a+++                                          
     CTQ27440.1  50 FFSFYCGPCYAFAERINVDTAIRKR-----LPDDMKLEKYHVSQMGPLGPALTEawavaqyagvdgkvekllfeglqvkrdiktaadivkvfnqlg 140
                    6666788888888888888888888.....888888888888888888877777777788888888888888888888888888888888888899 PP

  Thioredoxin_2  66 ..................ieenvelarkygvrgtPtivf 86 
                                      i+++  l++k++v+gtP++ +
     CTQ27440.1 141 itsekyaemqsnfmvkalIARQDNLVEKMKVHGTPSFYV 179
                    99999999999************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1665.83
//
Query:       CTQ27441.1  [L=57]
Description: hypothetical protein CH1034_180128 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 485.56
//
Query:       CTQ27442.1  [L=165]
Description: hypothetical protein CH1034_180129 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.55   10.1   2.0         28    4.7   0.0    3.0  4  Pox_T4_N  Poxvirus T4 protein, N terminus


Domain annotation for each model (and alignments):
>> Pox_T4_N  Poxvirus T4 protein, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.16   2.9e+03      28      35 ..      10      17 ..       6      20 .. 0.78
   2 ?   -2.0   0.0      0.19   3.4e+03      21      26 ..      18      23 ..      15      28 .. 0.80
   3 ?    3.6   0.1    0.0033        60      19      32 ..      29      42 ..      23      44 .. 0.89
   4 ?    4.7   0.0    0.0016        28      19      34 ..     114     129 ..     106     131 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.16
    Pox_T4_N 28 pgGlIkeG 35
                +gGlI  G
  CTQ27442.1 10 SGGLIPPG 17
                89999766 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.19
    Pox_T4_N 21 gCrlet 26
                gC++ +
  CTQ27442.1 18 GCHMRK 23
                9**976 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.0033
    Pox_T4_N 19 rtgCrletgpgGlI 32
                rtg +le+g +G I
  CTQ27442.1 29 RTGSHLEYGGEGGI 42
                89*********976 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.0016
    Pox_T4_N  19 rtgCrletgpgGlIke 34 
                 rtg +le+g +G I +
  CTQ27442.1 114 RTGSHLEYGGEGGIRT 129
                 89**********8865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1404.55
//
Query:       CTQ27443.1  [L=225]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-22   80.9   0.0    2.1e-22   80.1   0.0    1.4  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   1.2e-26   2.1e-22       1     174 [.      19     172 ..      19     173 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 1.2e-26
  Isochorismatase   1 talvviDmqndfveegvkeseeisavveninkllkaarkagipviftrdvheleevkgdlderkaaphfkpgttgaelvpelaple..gdvvvd 92 
                      ta+++iD q++++  ++  ++ ++++ ++++ l+k a  agipvi t  v+                      +   l+pe++  +    ++  
       CTQ27443.1  19 TAMLLIDHQSGLF--QTVGDMPMPELRARAAALAKMASLAGIPVITTASVPQ--------------------GPNGPLIPEIHENAphAKYIAR 90 
                      799**********..9999*********************************....................3444466666666666999999 PP

  Isochorismatase  93 KtrfsafagtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlkqafatvitte 174
                      K  ++a++++++++++k++g+kt+++aG  t+vC    a++a+  Gy+v+ v DA +++s+ +++  l+r+ qa++++++t+
       CTQ27443.1  91 KGEINAWDNPEFVAAVKATGRKTLIIAGTITSVCMAFPAIAAVADGYKVFAVIDASGTYSKMAQEITLARVVQAGVVPMDTA 172
                      *******************************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1866.91
//
Query:       CTQ27444.1  [L=286]
Description: putative Quercetin 2,3-dioxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-35  120.8   0.3    5.7e-35  119.6   0.2    1.7  2  Pirin      Pirin
      3e-30  104.6   0.1    1.1e-29  102.8   0.0    1.8  2  Pirin_C    Pirin C-terminal cupin domain
     0.0026   17.9   0.0     0.0075   16.4   0.0    1.7  2  Pirin_C_2  Quercetinase C-terminal cupin domain


Domain annotation for each model (and alignments):
>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.2   9.5e-39   5.7e-35       2     108 .]      20     127 ..      19     127 .. 0.95
   2 ?   -2.4   0.0      0.78   4.7e+03      53      82 ..     203     228 ..     175     246 .. 0.59

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 9.5e-39
                 EEECCGTCC.TTCCEECTCEECCEEESS.S.ETTEEEET-EEEEEEEBSEEEEEEEECSEEEEEETTS-EEEEETT-EEEEE-TT-EEEEEEE-SS... CS
       Pirin   2 vrvrralgkaaelqsvdpFlfldefdpaelevgeedvigagfpphphrgletvtylleGevehrDslGnkgvirpGdvqwmtAgsGivhsEmneee... 97 
                 + vr++++++++ q+++pFl+ld+++p ++  g+e   + g+++hphrg+etvt+++ GevehrDs+G+ gvi pGdvqwmtAg Gi+h+E+++e+   
  CTQ27444.1  20 FPVRSMFSYQTHGQQLSPFLLLDYAGPYTFPAGSE---KRGVGEHPHRGFETVTIVYAGEVEHRDSTGRGGVIGPGDVQWMTAGAGILHEEFHSEAftr 115
                 56788889999*******************99995...78******************************************************99999 PP

                 .SS-EEEEEEEE CS
       Pirin  98 .eesleglqlWv 108
                  +++l+++qlWv
  CTQ27444.1 116 sGGELKMIQLWV 127
                 99*********8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.78
                 EEEEEECSEEEEEETTS-EEEEETT-EEEE CS
       Pirin  53 tvtylleGevehrDslGnkgvirpGdvqwm 82 
                 t   +leGev  + s+      r G++ ++
  CTQ27444.1 203 TALVVLEGEVIINGSE----SAREGQLAVL 228
                 5555666665443332....2334444444 PP

>> Pirin_C  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.4   2.4e+03      18      51 ..      64      92 ..      58     105 .. 0.64
   2 !  102.8   0.0   1.9e-33   1.1e-29       1     104 []     182     284 ..     182     284 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.4
                TT-EEEEEEEES-EEESSTTEEE-TTEEEEE-SS CS
     Pirin_C 18 egleaavyvleGelevggerseieeeqlavlgdg 51
                 g+e++  v++Ge+e  +++     ++  v+g+g
  CTQ27444.1 64 RGFETVTIVYAGEVEHRDST-----GRGGVIGPG 92
                67888999999999866654.....444444444 PP

  == domain 2  score: 102.8 bits;  conditional E-value: 1.9e-33
                 EEEEEE-TT-EEEEE--TT-EEEEEEEES-EEESSTTEEE-TTEEEEE-.SSSEEEEE--SS-EEEEEEEE----S--EEETTEEESSHHHHHHHHHHH CS
     Pirin_C   1 yldltleagaelelplpegleaavyvleGelevggerseieeeqlavlg.dgdslvvkaeekgarvlLlaGePlgepvvqyGpfVmntkeeieqafedy 98 
                 ++dl+l++g +l+l+ peg+ +a++vleGe+ ++g++ + +e+qlavl+ +gd ++++a+ ++a+vlL+aGePl+ep+v yGpfVmn k +i++a++d+
  CTQ27444.1 182 VWDLQLNQGHDLTLRQPEGWSTALVVLEGEVIINGSE-SAREGQLAVLSqAGDAVHLEAT-APAKVLLMAGEPLQEPIVGYGPFVMNNKTQIAEAVRDF 278
                 589*********************************7.9**********99********9.************************************** PP

                 HTT-TT CS
     Pirin_C  99 regrfg 104
                 ++grfg
  CTQ27444.1 279 NSGRFG 284
                 ****96 PP

>> Pirin_C_2  Quercetinase C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   6.5e+03      60      85 ..      17      42 ..      10      42 .. 0.85
   2 !   16.4   0.0   1.2e-06    0.0075      19      84 ..     181     248 ..     168     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
   Pirin_C_2 60 gDGlaiedesslsltaeedaevLlfD 85
                gDG+ +++  s + ++++ + +Ll+D
  CTQ27444.1 17 GDGFPVRSMFSYQTHGQQLSPFLLLD 42
                89999999888999999999999987 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.2e-06
   Pirin_C_2  19 rlyaakldegesleyelaagrkaYlqvieGevevngesla.agDGlaie.desslsltaeedaevLlf 84 
                 +++ ++l++g+ l+++  +g +  l v+eGev +ng++ a +g  + ++   ++++l+a+++a+vLl+
  CTQ27444.1 181 NVWDLQLNQGHDLTLRQPEGWSTALVVLEGEVIINGSESArEGQLAVLSqAGDAVHLEATAPAKVLLM 248
                 68999******************************977663555444441445899999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 2384.50
//
Query:       CTQ27445.1  [L=301]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-40  139.0   7.7    1.7e-40  138.6   7.7    1.2  1  LysR_substrate  LysR substrate binding domain
    1.5e-16   60.1   0.2    3.8e-16   58.8   0.2    1.7  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   7.7   1.9e-44   1.7e-40       2     207 ..      88     294 ..      87     296 .. 0.95

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 1.9e-44
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGG.S CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLar.g 93 
                     +++rg++ri++p tl + ++ p+larf+aryP+v+l+l++++  + +d + eg +D+air +p   eds+l+ r+La+  + lvaspd  + r g
      CTQ27445.1  88 AEPRGSVRITCPVTLLHVHIGPMLARFMARYPGVTLHLEATN--RRVDVVGEG-VDVAIRVRPRpiEDSDLVMRVLADRGHRLVASPDL-ISRlG 178
                     799***************************************..*********.**********************************8.888** PP

                     SSECGGGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEE CS
  LysR_substrate  94 epvsledLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relyl 185
                     +p ++++L  +p + l ++ +   ++l     ++a++  ++++ ++++ al+++++aG+G+  lp ++vrd la+g+l+ ++l+e++++   +++
      CTQ27445.1 179 RPQAPSELSAWPGLSLGANKHqhKWQLTGPGGARAEVYFTPRMVTTDMLALREAAMAGVGVVQLPLLMVRDQLASGELE-VVLDEWQPRrEVIHA 272
                     ****************87777746666666666779999****************************************.*********999*** PP

                     EEETTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 186 vyrkgrelspavrafidflrea 207
                     v+ ++r l p vra++d+l e+
      CTQ27445.1 273 VFASRRGLLPSVRALVDYLSEE 294
                     *******************987 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.2   4.2e-20   3.8e-16       1      60 []       4      63 ..       4      63 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 4.2e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l++++ fv+v+++g f++A ++L    + +sr+i++LEe+lgv+L++Rt+r++ +Te G+
  CTQ27445.1  4 LNDFAWFVQVVDHGGFAAAGRALDQPKSKLSRRIAQLEERLGVRLIQRTTRQFAVTEVGQ 63
                689999***************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2594.21
//
Query:       CTQ27446.1  [L=197]
Description: Putative ribosomal protein (modular protein) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1660.73
//
Query:       CTQ27447.1  [L=312]
Description: 2-ketoacid reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-43  146.0   0.0    9.5e-43  145.6   0.0    1.1  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    8.2e-06   26.1   0.0    1.3e-05   25.4   0.0    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.18   11.8   0.0    1.4  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.6   0.0   1.6e-46   9.5e-43       2     178 .]     105     277 ..     104     277 .. 0.96

  Alignments for each domain:
  == domain 1  score: 145.6 bits;  conditional E-value: 1.6e-46
                   HHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE- CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslh 98 
                   +++l+  rr+ ++++   + +w   + l+ ++  + tvGi+G+G +G +va+ l+++g+ + +++rs+k+  ++++  +  ++l e+l+ + ++++ 
    CTQ27447.1 105 SQVLHWFRRFDDYQALKLASRW---QPLPEYRADEFTVGIMGAGVLGAKVAESLQPWGFPLRVWSRSRKSWPQVQS-FAGQAELGEFLQGTRVLINL 197
                   689999****************...999***************************************997774444.55789*************** PP

                   S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  99 lpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   lp t+et ++in++ la+++++++++N aRG  v ee+Ll+aL+sgk++ga+lDvf+ eplp++spl+ +p+v +tPH+a
    CTQ27447.1 198 LPNTAETAGIINQTLLAQLPDESYVLNLARGVHVVEEDLLAALNSGKLKGAMLDVFSREPLPQESPLWAHPRVAMTPHVA 277
                   ******************************************************************************98 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.2e-09   1.3e-05       2      87 ..     139     223 ..     138     243 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.2e-09
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEE CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdili 87 
                    +g++G Gv+G++ a+ l+  g+ + v+ r++++  ++    + + +++ e++++ +v i ++++++++  +i++ ll++l  +++++
     CTQ27447.1 139 VGIMGAGVLGAKVAESLQPWGFPLRVWSRSRKSWPQVQ--SFAGQAELGEFLQGTRVLINLLPNTAETAGIINQtLLAQLPDESYVL 223
                    89****************************99888876..5778999***************************9888887777665 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.9e-05      0.18       2      50 ..     139     190 ..     138     235 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.9e-05
                     EEEE--SHHHHHHHHHHHTTT--EEEE-S-H...HHHHHHHHHSSBTTTBTT CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaenghevrlwvree...elieeineehenvkyLpg 50 
                     ++++GaG  G  +A +l+  g + r+w+r++    +++++  + e  ++L+g
      CTQ27447.1 139 VGIMGAGVLGAKVAESLQPWGFPLRVWSRSRkswPQVQSFAGQAELGEFLQG 190
                     89***************************99444344444445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2568.07
//
Query:       CTQ27448.1  [L=245]
Description: putative PHP hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-08   33.1   0.1      2e-07   31.4   0.1    1.8  1  PHP       PHP domain


Domain annotation for each model (and alignments):
>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   1.1e-11     2e-07       1      71 [.       5      79 ..       5     160 .. 0.67

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.1e-11
                EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTT....HHHHHHHHHHH..HTTTTSEEEEEEE...... CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
         PHP  1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlf....gyvefykaakk..kykagikpiiGleayvadd 71
                dlH+Ht  s+  +  ++ +++++ak++g+k +aiTDhg+       y++f++      +  +g+ ++ G+e ++++ 
  CTQ27448.1  5 DLHMHTVASTH-AYSTLHDYIAEAKRKGIKLFAITDHGPDMadapHYWHFVNMR-IwpRLVDGVGILRGIESNIKNI 79
                89*******88.77778********************97444444555555432.1234448888888888666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1940.84
//
Query:       CTQ27449.1  [L=184]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-12   47.9   0.3    1.8e-12   47.4   0.3    1.2  1  Nitrate_red_del  Nitrate reductase delta subunit


Domain annotation for each model (and alignments):
>> Nitrate_red_del  Nitrate reductase delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.3     1e-16   1.8e-12       4     134 ..      36     146 ..      33     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 1e-16
  Nitrate_red_del   4 lsaeveealaelaealaaededllelaaeYtrLFlgpgrrsasPyesvYlsekkgllfgestlevrefyrqaglevaeefneppDHlaveLefl 97 
                      l+a++  + +el + l +++ + + la++Y++LF+g    s++Py s++++       g s +evr+f++++g+   e+    +DHl+ +L + 
       CTQ27449.1  36 LAASWPLEQDELLARL-QKSCEMQSLATDYNALFVG-EACSVPPYRSAWVE-------GSSEAEVRAFLSEHGIPTGEGP---ADHLGSLLLAA 117
                      6666666667788888.4888999***********7.999***********.......6789************999996...********999 PP

  Nitrate_red_del  98 ahLaereaeaeeaeeaealleaqkafleehllpWlpe 134
                      + L +++ae        +  e+++ ++ +++lpW++ 
       CTQ27449.1 118 SWLEDHAAE--------DQSETLELLFADYILPWCGT 146
                      988877776........56799************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1492.38
//
Query:       CTQ27450.1  [L=160]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-39  133.9  24.3    5.1e-39  133.7  24.3    1.0  1  DUF1097   Protein of unknown function (DUF1097)


Domain annotation for each model (and alignments):
>> DUF1097  Protein of unknown function (DUF1097)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.7  24.3   2.8e-43   5.1e-39       1     145 [.       8     142 ..       8     143 .. 0.97

  Alignments for each domain:
  == domain 1  score: 133.7 bits;  conditional E-value: 2.8e-43
     DUF1097   1 alsvgvlaglwallaatlgelpvWagFigwasffaaGg.gkkgllkslltnllGvvwAllaillisllggnlgllalllvvgivaflmvllakipllsf 98 
                 al++g+l+g+w ++a++lg l+ WagF+g++++fa+++ g+kgl+ s +t+++Gv+wAl++i++++l+++ +++l+++ ++g+vaflm+++a+  llsf
  CTQ27450.1   8 ALTTGILSGIWGWVAVALG-LLSWAGFLGCTAYFACPQgGLKGLAISSCTVMSGVAWALVIIHGSALAPQ-VQILSYM-MTGVVAFLMCIQARRTLLSF 103
                 79*****************.**********************************************9655.******9.******************** PP

     DUF1097  99 iPaiflGlastfatllktavalsnpllavivslllGavfGylseala 145
                 +P++f+G+++tfa        +++++ +vi+sl+lG+vfGy+++ ++
  CTQ27450.1 104 VPGTFIGACATFA--------ADGDWRLVIPSLALGLVFGYAMKNSG 142
                 *************........9*********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1202.23
//
Query:       CTQ27451.1  [L=175]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-43  145.0   0.2    1.2e-42  144.7   0.2    1.1  1  Macro     Macro domain


Domain annotation for each model (and alignments):
>> Macro  Macro domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.7   0.2   6.5e-47   1.2e-42       1     118 []      21     137 ..      21     137 .. 0.98

  Alignments for each domain:
  == domain 1  score: 144.7 bits;  conditional E-value: 6.5e-47
                 EEEEETTSS-CSHHHHHHHHHHHHHHHHHHHHHHHHHHS--TTSEEEEE-TTSSSSEEEEEESE-TTTSTSTTHHHHHHHHHHHHHHHHHHTT-SEEEE CS
       Macro   1 VnAaNsrllggggvagaihraagkalkeeckelekkqggcllGeavvtpaynlpakyvihtvgplftsskskeeeellakayknalelaeekgiksvaf 99 
                 VnAaN +llggggv+gaihraag+al+++ck++ ++qg+c+ G+av+t a+nl+a  vihtvgp+++ ++++ e+++la+aykn+l+la  ++ +s+af
  CTQ27451.1  21 VNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPPGHAVITIAGNLSASAVIHTVGPVWH-GGDRMEAQTLADAYKNSLQLASANNYRSIAF 118
                 9*****************************************************************6.8****************************** PP

                 E-TTSSTTSBTHHHHHHHH CS
       Macro 100 PaistGifgvpweeaarva 118
                 PaistG++g+p eeaa +a
  CTQ27451.1 119 PAISTGVYGYPREEAAAIA 137
                 ****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1406.70
//
Query:       CTQ27452.1  [L=197]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-15   55.5   0.7    7.9e-15   54.4   0.7    1.6  1  TetR_N        Bacterial regulatory proteins, tetR family
    0.00021   21.5   0.9    0.00043   20.5   0.9    1.5  1  TetR_C_6      BetI-type transcriptional repressor, C-terminal
    0.00025   20.7   0.1    0.00049   19.8   0.1    1.5  1  HTH_23        Homeodomain-like domain
    0.00037   20.7   1.6    0.00037   20.7   1.6    1.9  2  TetR_C_31     Tetracyclin repressor-like, C-terminal domain
     0.0026   17.8   0.0     0.0071   16.4   0.0    1.7  1  HTH_7         Helix-turn-helix domain of resolvase
  ------ inclusion threshold ------
      0.012   15.1   0.0      0.024   14.1   0.0    1.5  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
      0.014   15.6   0.2      0.041   14.0   0.2    1.8  1  HTH_28        Helix-turn-helix domain
      0.017   14.7   0.0      0.043   13.4   0.0    1.7  1  CENP-B_N      CENP-B N-terminal DNA-binding domain
      0.023   14.8   0.0      0.046   13.8   0.0    1.5  1  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.7     4e-18   7.9e-15       1      47 []      17      63 ..      17      63 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 4e-18
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                I+ aA ++fae+G ++++v++IA++AG+s g lYr F+sKe+++ea+
  CTQ27452.1 17 IVVAAQKCFAEKGLHGASVADIAREAGLSVGQLYRIFASKEAIIEAI 63
                789******************************************97 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.9   2.2e-07   0.00043       6     114 ..      86     193 ..      82     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.2e-07
                 HHHHHCCSTHSHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSTHHHHHHHHHHHHHHHHHHHHHTC.TTCHHHHHH CS
    TetR_C_6   6 raileallpldqerraelavwlafwaeaardpelaelqrenyarlrsnlrallaelaegglradadaeaaAerlaAlidGLwlraalap.eeldaerar 103
                  a+l   +p++++++    + +++ aea r+p+l+e++ ++++rl ++  +l ++  +   ++da  +aa e +a l++G + r  l+   ++d++ ++
  CTQ27452.1  86 AAVLAGRIPTSAATKSDNYLLMEINAEASRNPRLREILMQADRRLKEEGGRLSQRYHP--GLSDARRNAASELIAVLTEGAAYRCELSAsTPVDKADLE 182
                 5788889999999999999***************************************..99999999***************9888865888888888 PP

                 HHHHHHHHHHT CS
    TetR_C_6 104 alvrrhldall 114
                 al +   d+l+
  CTQ27452.1 183 ALYNMIFDRLF 193
                 88777777665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   2.5e-07   0.00049       3      38 ..      10      53 ..       8      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.5e-07
      HTH_23  3 sereRlrillllae........GlsvreIAreLgvsrrTvyrwl 38
                +  +R++i+ ++++        G+sv++IAre g s  ++yr+ 
  CTQ27452.1 10 QQARRAEIVVAAQKcfaekglhGASVADIAREAGLSVGQLYRIF 53
                5689*********7777899**********************96 PP

>> TetR_C_31  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.83   1.7e+03      46      89 ..      12      52 ..       6      71 .. 0.50
   2 !   20.7   1.6   1.9e-07   0.00037       8     100 ..      87     184 ..      80     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.83
                HHHHHHHHHHHHHHHHHCSS-HHHHHHHHHHHHHHHHHHHHHSG CS
   TetR_C_31 46 rlrralrealaallaalGlpdpeeaarllvaaldGllldrLagp 89
                ++r++++ a++ ++a+ Gl+++   ++  +a   Gl + +L + 
  CTQ27452.1 12 ARRAEIVVAAQKCFAEKGLHGAS--VA-DIAREAGLSVGQLYRI 52
                55566666666666666664322..22.2344455555555554 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 1.9e-07
                 HHHHHHCCCCCTTHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHH..CSS-HH.HHHHHHHHHH.HHHHHHHHHSGTS-H..HHHHHHH CS
   TetR_C_31   8 dlladlldraladrertlAryelfleaarrPeLraalarlrralrealaallaal..Glpdpe.eaarllvaal.dGllldrLagpaadp..raevrel 100
                 ++la  +   +a  ++   ++e   ea+r+P+Lr++l ++ r+l e   +l ++   Gl d++  aa  l+a+l +G+ +++   +  +p  +a++++l
  CTQ27452.1  87 AVLAGRIPTSAATKSDNYLLMEINAEASRNPRLREILMQADRRLKEEGGRLSQRYhpGLSDARrNAASELIAVLtEGAAYRCELSA-STPvdKADLEAL 184
                 555555555555666777899*****************************999762255555525777799999899999876665.233344555555 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.5e-06    0.0071      21      44 ..      32      55 ..      31      56 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.5e-06
                T--STTTSSSS---SSSS--SS-- CS
       HTH_7 21 GisiskIAkevnisRsTvYRylad 44
                G s+++IA+e ++s+ ++YR++a 
  CTQ27452.1 32 GASVADIAREAGLSVGQLYRIFAS 55
                789******************986 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.2e-05     0.024      26      49 ..      31      54 ..      26      55 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
  HTH_Tnp_ISL3 26 esrsvkavArqlgvSwtTVwrild 49
                  +++sv+++Ar+ g+S   + ri+ 
    CTQ27452.1 31 HGASVADIAREAGLSVGQLYRIFA 54
                  678*******************95 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2     2e-05     0.041       1      31 [.      13      51 ..      13      52 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2e-05
      HTH_28  1 qRleiikllaa........GhsvreaArelgisrrtvyr 31
                +R+ei+ ++++        G sv+++Are g+s  ++yr
  CTQ27452.1 13 RRAEIVVAAQKcfaekglhGASVADIAREAGLSVGQLYR 51
                578888888876777766355*****************9 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.2e-05     0.043      22      50 ..      32      60 ..      27      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.2e-05
                TT-HHHHHHHHT--CCHHHHHHHCHHHHC CS
    CENP-B_N 22 geSkaelarrfnvpestlsdilknKkkll 50
                g S+a++ar+ ++   +l++i + K+++ 
  CTQ27452.1 32 GASVADIAREAGLSVGQLYRIFASKEAII 60
                67************************985 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.3e-05     0.046       8      29 ..      32      53 ..      30      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
                T--HHHHHHHTTSSHHHHHHHH CS
    HTH_AraC  8 nltiediAdelgfSrsyFsrlF 29
                + +++diA e+g+S  +++r+F
  CTQ27452.1 32 GASVADIAREAGLSVGQLYRIF 53
                569******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1557.70
//
Query:       CTQ27453.1  [L=389]
Description: membrane protein required for modification of periplasmic glucan [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-31  109.3  50.0    3.2e-31  108.6  50.0    1.3  1  Acyl_transf_3   Acyltransferase family
     0.0017   18.1   0.1     0.0046   16.7   0.1    1.7  1  Phage_Coat_Gp8  Phage major coat protein, Gp8


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6  50.0   3.6e-35   3.2e-31       3     339 ..      14     360 ..      12     361 .. 0.88

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 3.6e-35
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3   3 ylDllRgiAillVvflHaliayspdagrgspiqasqssqi..aflggfgvplFFllSGfflaamlyrrrglsklikrRilrlliplliwllliill 96 
                    ++D +R++++ll++ +H++  ys+  ++ ++ ++s+++ +   f++ f++++FF++SG+f + ml+ r +l+k++k R+ r+ ip+l  + l++l 
     CTQ27453.1  14 FFDSIRAWLMLLGIPFHISLIYSSHSWHVNSAEPSWWLTLfnDFIHAFRMQVFFVISGYFSY-MLFLRYPLKKWWKVRVERVGIPMLTAIPLLTLP 108
                    789**********************************999*********************9.********************************* PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3  97 ialvaghiqanasanvtlfdetkglmfllfefpatghlWfLwalfvlylllpll............lrllrkvrkshlllllilllllslvfirhe 180
                    +++  +  +  a+ + tl+    ++ f+ + + +++hlWfL +l+vl+ l  +l             ++  +v    l +++++l++l +v+ r  
     CTQ27453.1 109 QFIMLQYVNGKAENWHTLS---GYDKFNTLAWELISHLWFLLVLVVLTSLGVVLfkwltrrpaggaSAFGDTVTMGQLTMIFLALGVLYAVIRRSL 201
                    *******************...99********************8888777777455566666665555555555556666666666666666666 PP

                    xxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 181 lfgpatsvgllplpsvla.....llfflfGalladaddrdrnlsrglkislllsllllalillalfgqtdggglvasvliqsaslllvslgimlll 271
                    +  +++ + +  +  v +     l+ff++Ga  + + + +  + +   ++++++ll+++++ l   + +  g+ +++++ +  +++l ++ + +++
     CTQ27453.1 202 FLIYPPLLSNGLFNFVVMqtlfyLPFFVLGAQTFINPRLKAMFTTPSPWCCAAALLGFIAYRLNQQYGS--GDGWMYETESVITMVLGLWMVNVVF 295
                    55555555555555444489999********************99999999998888888877766666..9************************ PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 272 lllfalpsrsafkllrylgkiSygiYliHlpllmllqkllrdwglnlgevlllvlllvvsvivsvvll 339
                     l  +l ++++++ + y+ ++S+ iYl+H pl  l++ ++ + +    ++l ++ +lv++v ++++l+
     CTQ27453.1 296 SLGHRLLNFQSAR-VTYFVNASLFIYLVHHPLTLLYGAWITPVIKS--NTLGFIGGLVFVVGIALILY 360
                    *************.*****************************777..99**************9997 PP

>> Phage_Coat_Gp8  Phage major coat protein, Gp8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   5.2e-07    0.0046      15      47 ..     130     162 ..     124     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.2e-07
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Phage_Coat_Gp8  15 dSLkaqAteligyaWavVvvvvvAtlgIkLFKK 47 
                     d  ++ A eli+  W + v+vv   lg+ LFK 
      CTQ27453.1 130 DKFNTLAWELISHLWFLLVLVVLTSLGVVLFKW 162
                     677899*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2808.07
//
Query:       CTQ27454.1  [L=84]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 645.68
//
Query:       CTQ27455.1  [L=517]
Description: glucan biosynthesis protein, periplasmic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.5e-198  657.9   0.1   1.1e-197  657.8   0.1    1.0  1  MdoG      Periplasmic glucan biosynthesis protein, MdoG


Domain annotation for each model (and alignments):
>> MdoG  Periplasmic glucan biosynthesis protein, MdoG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  657.8   0.1    6e-202  1.1e-197       1     477 []      29     513 ..      29     513 .. 0.97

  Alignments for each domain:
  == domain 1  score: 657.8 bits;  conditional E-value: 6e-202
                 --HHHHHHHHHHHHTS-----------------HHHHTT-EE-GGG-BTTTSSSS-EEEEEE-BTTB-S-BEEEEE-SS-EEE----GGGEE-TTS--- CS
        MdoG   1 FsfetvkekaralaakpyaapeeelpealakldydqyrkirfrpekalwkeeklpfevqffhlgllfkepvkinevedgkareiaydpslFdygkekka 99 
                 Fs+++v+++a++la k y+ap+++lp+a+++++y +y++i+f+++ka+w+++k+pf+++f+h+g++f++pv+inev+++++r+i+y+p++F++g+ +++
  CTQ27455.1  29 FSIDDVAKEAKTLAGKGYEAPKSNLPSAFRDMKYADYQQIQFNHDKAYWNNQKTPFKLEFYHQGMYFDTPVTINEVTATSVRKIKYSPDYFNFGNVQHD 127
                 999************************************************************************************************ PP

                 TTTSTT--EEEEEEEEECCETTEEEEEEEEESTTEEEE--TT-----EEES-EESTT-TT--B--EEEEEEEE---TT---EEEEEEEEETTEEEEEEE CS
        MdoG 100 kelpkdlgfaGfrlhaplnkeevkdellvflGASYFRavgkgqqyGlsARglaidtaepkgEeFPaFtefwlerpakeaksltvyAlLdspsvtGayrf 198
                 k++ kdlgfaGf++ +p+n+++++de++++lGASYFR++g+gq+yGlsARglaidta+p+gEeFP+F+efw+erp++++k+lt+yAlLdsp++tGayrf
  CTQ27455.1 128 KDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVLGQGQVYGLSARGLAIDTALPSGEEFPRFREFWIERPKATDKRLTIYALLDSPRATGAYRF 226
                 *************************************************************************************************** PP

                 EEE-SSSEEEEEEEEEEESS--S-EEEEEEEE-EEEBTTB--SS--S-S-EES--EEEEE-TTS-EEEEE----SS-EEEEEEEES--EEEEE-----G CS
        MdoG 199 virpgeetvvdveatlflRkdveklGiapltSmflfgendrrkaddfrpevhDsdgLliatgngewiwRpLnnpkklqvssfadenpkGFGLlqrdref 297
                 vi pg++tvvdv+++++lR++v klG+apltSmflfg+n++++a ++rp++hDs+gL+i  gngewiwRpLnnpk+l+vss+a+enp+GFGLlqr r+f
  CTQ27455.1 227 VIMPGRDTVVDVQSKVYLRDKVGKLGVAPLTSMFLFGSNQPSPALNYRPALHDSNGLSILAGNGEWIWRPLNNPKHLAVSSYAMENPQGFGLLQRGRQF 325
                 *************************************************************************************************** PP

                 GGT--TTT-GGG--EEEEEESS---EEEEEEEE---SSTTS--EEEEEEESS---TT-EEEEEEEEEEES-GGGG.T.TSBEEEEEEEEESST.T.-TT CS
        MdoG 298 esYqDlearYekRPslwvepkgdwgkGaveLveiptddEtnDNivafWvpeeplkageelefaYrltwgeeepka.eeplarvvatrvgkgee.k.kek 393
                 ++++Dl++rY+ RPs+w++pkg+wgkG++eLveipt+dEtnDNiv++W+p++ +++g+e++f+Y++t++++e k  +++ a v++tr+++g++ + +  
  CTQ27455.1 326 SRFEDLDDRYDLRPSAWITPKGEWGKGKIELVEIPTNDETNDNIVTYWTPDQLPEPGKEMNFKYTITFSRDEDKLhAPDNAYVMQTRRSTGDVkQsNLI 424
                 ***********************************************************************988766789***********66334444 PP

                 -..-SEEEEEEEEE-TTGGGS-T--.-EEEEEE-TT.EEEEEEEEEETTTTEEEEEEEEEES-T.S-EEEEEEEEETTCEEEEEEEEEE CS
        MdoG 394 r..keskkfvvdfegealekleeee.veaevtasag.eivessvernpetkgwrlvfdlepede.epvelravLkkgekalsetwlyqw 477
                 r  + + +f+vdf+g++++kl++++ v+a+ ++ ++ eive++v++np tkgwr++++l+++d  +++e+ra+L +g+++lsetw+yq+
  CTQ27455.1 425 RqpDGTIAFIVDFTGADMKKLPADTpVAAQASTGDNaEIVENTVRYNPVTKGWRMILRLKVKDPkKTTEMRAALVNGDDTLSETWSYQL 513
                 4457888***************666699999999888************************776488********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 4110.30
//
Query:       CTQ27456.1  [L=842]
Description: glucan biosynthesis: glycosyl transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-23   82.0   0.0    7.1e-23   81.3   0.0    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
    1.1e-12   48.2   4.6    1.1e-12   48.2   4.6    3.2  3  Glyco_trans_2_3  Glycosyl transferase family group 2
    2.2e-08   33.7   0.0    5.9e-08   32.4   0.0    1.7  1  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   1.2e-26   7.1e-23       2     168 ..     246     428 ..     245     430 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 1.2e-26
                      EEEEESS-.....TTTHHHHHHHHHHHGGCCEEEEEEEEES-.SSCHHHHHGGGCH......C-TTEEEEEESSS-.HHHHHHHHHHHH--SS. CS
  Glycos_transf_2   2 vviptyNe.....ektlletlesllaqdpypdfeiivvDDgS.tDetveileelak......edprvrvirreenv.Gkagalnaglraatgd. 81 
                       ++p++Ne      + l++t+es++a  ++ +f+++++ D+  +D +v+  +++++      +++++ + rr ++v  k+g++   +r++ ++ 
       CTQ27456.1 246 LIMPICNEdvdrvFAGLRATWESVKATGNAAHFDVYILSDSYnPDICVAEQKAWMEliaevqGEGQIFYRRRRRRVkRKSGNIDDFCRRWGSQy 339
                      59***************************************99*************************************************** PP

                      .EEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS.EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHH CS
  Glycos_transf_2  82 .yilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrv.generlyfkerkrslkgnlsfeigsaallrrealee 168
                       y+++lDaD++++ ++l+ lv+ +e++++++++++ pr +g+++ + r +++ ++ + + f+ + ++++ + s+++g++a++r++ + e
       CTQ27456.1 340 sYMVVLDADSVMTGECLSSLVRLMEANPNAGIIQSSPRASGMDTLYARCQQFaTRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIE 428
                      *************************************************************************************9977 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   4.2      0.51     3e+03     147     195 ..     162     209 ..     111     220 .. 0.64
   2 !   48.2   4.6   1.9e-16   1.1e-12       1     170 [.     341     533 ..     341     640 .. 0.70
   3 ?   -2.8   0.5      0.81   4.8e+03     159     189 ..     664     694 ..     646     703 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.51
  Glyco_trans_2_3 147 eklillvrllgylgsllwsalplhlallllfsllalalvlllllllaal 195
                      ++ ++l+++  + g+ lw +++ +l  ++l+s + +++++l++++ a++
       CTQ27456.1 162 YQGWALINPADMVGQNLWISFMQLL-PYVLQSGILILFAVLFCWVSAGF 209
                      4556677777777777777766544.44444444444444444444444 PP

  == domain 2  score: 48.2 bits;  conditional E-value: 1.9e-16
  Glyco_trans_2_3   1 iilllDaDtvlppdclreiaaela.spevaivqgpvlvmnvanwleelaalffaedhgkdilvrealgrvvp....svGsgaflrrsalqevg. 88 
                      + ++lDaD+v++ +cl  ++++++ +p+++i+q    + +  +++++++ + + + +g   l++++l+         +G++a++r++ + e   
       CTQ27456.1 341 YMVVLDADSVMTGECLSSLVRLMEaNPNAGIIQSSPRASGMDTLYARCQQFAT-RVYGP--LFTAGLHFWQLgeshYWGHNAIIRVKPFIEHCa 431
                      579*********************66*******66554444455555554333.22222..23333333222233399*********9764444 PP

  Glyco_trans_2_3  89 ........gwdgdessvsEDfdmglrlqrkGyrvrfvpes.lvkekspltlraalrQrkRwayGc..el........eklil...lvrllgylg 160
                               +    s +s Df  +  ++r+G+ v  + +  + +e+ p++l ++l++ +Rw +G+  +         +++++   l+  + yl 
       CTQ27456.1 432 laplpgegNFA--GSILSHDFVEAALMRRAGWGVWIAYDLpGSYEELPPNLLDELKRDRRWCQGNlmNFrlflvrgmHPVHRavfLTGVMSYLS 523
                      66777755555..89*****************99888777799*********************632002222222222221111222223333 PP

  Glyco_trans_2_3 161 sllwsalplh 170
                       +lw+ ++++
       CTQ27456.1 524 APLWFMFLAL 533
                      3333332221 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.81
  Glyco_trans_2_3 159 lgsllwsalplhlallllfsllalalvllll 189
                      l  l+w+  +++l l +lf+l++++++l+l 
       CTQ27456.1 664 LLGLVWAVGMAWLDLRFLFWLAPIVVSLILS 694
                      4445555544444455666666655555443 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   9.8e-12   5.9e-08       5     148 ..     311     468 ..     307     492 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 9.8e-12
  Glyco_transf_21   5 rllvsgdpvgvnpKvnnllqalea..akydllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaaleaaflntlagvlqa.. 93 
                      ++++ + ++ v++K  n+   +++   +y+++v++D+d +++ + L +l++ +e  p++g+++s p++s+ ++l+a+ ++     +  +++a  
       CTQ27456.1 311 QIFYRRRRRRVKRKSGNIDDFCRRwgSQYSYMVVLDADSVMTGECLSSLVRLMEAnPNAGIIQSSPRASGMDTLYARCQQFATRVYGPLFTAgl 404
                      57888999*********************************************998********************998888754444444435 PP

  Glyco_transf_21  94 kl..sglgfavGksmalrreaLeaiGGfeal.......adeLAeDyalgkllraaGlkvvlspa 148
                      ++   g +  +G   ++r + + +   +++l       +  L  D++ ++l+r+aG+ v+++ +
       CTQ27456.1 405 HFwqLGESHYWGHNAIIRVKPFIEHCALAPLpgegnfaGSILSHDFVEAALMRRAGWGVWIAYD 468
                      3334588999******999999998888888333333344599999999999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.38
# Mc/sec: 6647.05
//
Query:       CTQ27457.1  [L=75]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-08   33.1   8.0    3.3e-06   27.4   8.0    2.3  1  DUF1375   Protein of unknown function (DUF1375)
  ------ inclusion threshold ------
      0.055   13.3   1.2       0.12   12.3   1.2    1.6  1  LPAM_2    Prokaryotic lipoprotein-attachment site
       0.16   12.1   0.7       0.29   11.3   0.7    1.4  1  MLTD_N    MltD lipid attachment motif


Domain annotation for each model (and alignments):
>> DUF1375  Protein of unknown function (DUF1375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   8.0   5.5e-10   3.3e-06      28      53 .]      44      69 ..      31      69 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 5.5e-10
     DUF1375 28 latppltivDlPvslvvDTvlLPyDl 53
                 a   lti+DlP+slv+DT+lLP D+
  CTQ27457.1 44 SAWRYLTILDLPFSLVFDTLLLPLDA 69
                556779******************96 PP

>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.2     2e-05      0.12       4      15 ..       6      17 ..       4      18 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2e-05
      LPAM_2  4 llallllLaGCG 15
                ++a +llL+GCG
  CTQ27457.1  6 IIAMALLLSGCG 17
                789********9 PP

>> MLTD_N  MltD lipid attachment motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.7   4.9e-05      0.29      22      33 ..       6      17 ..       4      18 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.9e-05
      MLTD_N 22 alaaaalLaGCQ 33
                ++a+a+lL+GC 
  CTQ27457.1  6 IIAMALLLSGCG 17
                689********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 584.89
//
Query:       CTQ27458.1  [L=128]
Description: hypothetical protein CH1034_180145 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-61  206.0  13.8    1.9e-61  205.8  13.8    1.0  1  MsyB      MsyB protein


Domain annotation for each model (and alignments):
>> MsyB  MsyB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.8  13.8   1.1e-65   1.9e-61       1     122 []       7     128 .]       7     128 .] 0.99

  Alignments for each domain:
  == domain 1  score: 205.8 bits;  conditional E-value: 1.1e-65
        MsyB   1 lyatleeaidaareefleshadsekddasveqlslqkyvlqdGdilwqaeflededddgealallsgeaaqaifdgdydeielreewqeentlhewdeg 99 
                 +yatleeaidaareefl++++ds+++ a+veql++qkyvlqdGdi wqaef++de+++ge+l++lsgeaaq++fdgdydeielr+ew eentlhewdeg
  CTQ27458.1   7 FYATLEEAIDAAREEFLANNPDSDEESANVEQLNIQKYVLQDGDIAWQAEFFADEEEQGECLPMLSGEAAQSVFDGDYDEIELRQEWLEENTLHEWDEG 105
                 69************************************************************************************************* PP

        MsyB 100 efqleppldteeGkaaadewdee 122
                 efqlep ldteeG++aadewde+
  CTQ27458.1 106 EFQLEPSLDTEEGQTAADEWDER 128
                 *********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1101.41
//
Query:       CTQ27459.1  [L=408]
Description: putative metabolite efflux transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-53  181.7  47.8    2.3e-34  118.9  34.3    2.0  2  MFS_1            Major Facilitator Superfamily
    5.2e-12   45.4  31.7    7.4e-06   25.1   7.6    3.1  3  Sugar_tr         Sugar (and other) transporter
    5.7e-12   45.2  15.8    1.1e-10   41.0  15.8    2.2  1  MFS_1_like       MFS_1 like family
    0.00023   19.7  22.4    0.00028   19.4  22.4    1.1  1  MFS_3            Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9  34.3   5.2e-38   2.3e-34       2     265 ..      18     277 ..      17     278 .. 0.90
   2 !   74.9  14.8   1.2e-24   5.3e-21       1     177 [.     222     401 ..     222     407 .. 0.90

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 5.2e-38
       MFS_1   2 llaaflsalarsilgpalplalaedlgispse.....igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlq 95 
                 +l+ fl+++a+s+++p+lp ++ e+lg+++++      gl++++ +l++a+as+++G l+dr Gr+ +ll ++l++a+ ++l+ +a+++  +l+lr+l 
  CTQ27459.1  18 WLGCFLTGAAFSLVMPFLP-LYVEQLGVTGHSalnmwSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMAIVMMLMGMAQNIGQFLLLRALL 115
                 8999***************.899*********99999999***************************************55555889999********* PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpa 194
                 Gl  g+++p+++alia   p+ + g a+g ls+g+  Ga+lgpl+gg+la+++g r vf++ a+v++++f++ l+l++e+ ++ +rk+           
  CTQ27459.1 116 GLL-GGFIPNANALIATQIPRHKSGWALGTLSTGAVSGALLGPLAGGFLADHWGLRTVFFMTAAVLFICFLFTLFLIRENFVPIARKEMLS-------- 205
                 **9.8******************************************************************98888888888888885544........ PP

       MFS_1 195 plvpawkallkdpvlwillialllfffgfsg.lltllplylqevlgls.....glllaglllallalvgailallag 265
                  +++++++l +++    l+++l++++++++  + +  p+++  v++l+      ++++g++ ++++++++++a+ +g
  CTQ27459.1 206 -AREVFSSLQNPK----LVLSLFVTSLIIQVaTGSIAPILTLYVRDLAgnvsnIAFISGMIASVPGIAALMSAPRLG 277
                 .477899999999....888888888777777888888888889999987888558888888888888887776655 PP

  == domain 2  score: 74.9 bits;  conditional E-value: 1.2e-24
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigl....lltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrv 93 
                 l+++ +++  a + ++p+l+ ++ +dl  ++s i +    ++++ +++a+ +++ lG l+dr+G+ ++l+++l++++l  l+++ f  + +  l +lr+
  CTQ27459.1 222 LFVTSLIIQVATGSIAPILT-LYVRDLAGNVSNIAFisgmIASVPGIAALMSAPRLGKLGDRIGPEKILIVALIISVLL-LIPMsF-VQTPlQLGILRF 317
                 6788999999999*******.78899998888866655559999***********************************.999989.666779****** PP

       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepp 177
                 l G++ gal+pa+++l++  ++ +  gr +++ +++  +G + gpl+g+ +++++g+ravf++ a+v l+ ++   l l++++ 
  CTQ27459.1 318 LLGAADGALLPAVQTLLVYNSTSQISGRIFSYNQSFRDIGNVTGPLIGASVSANYGFRAVFLVTAGVVLFNAIYSTLSLRRPAA 401
                 ***********************************************************************9976666666655 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   7.6   1.7e-09   7.4e-06      42     125 ..      48     128 ..      20     157 .. 0.81
   2 !    8.6   2.4   0.00016      0.73     301     334 ..     154     187 ..     124     206 .. 0.66
   3 !   23.1   7.4   6.8e-09   3.1e-05      16     183 ..     233     387 ..     218     396 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.7e-09
                 HH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHH CS
    Sugar_tr  42 eessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPm 125
                  +++++sgl++si+++ ++i s f g l+dr GRk  ll +a+ + i  +l+++a+   ++ ++++ R l+G+  G++ +   +
  CTQ27459.1  48 SALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMAIVMMLMGMAQ---NIGQFLLLRALLGLLGGFIPNANAL 128
                 34789***************************************************...**************88877655444 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 301 fvatfvaiflvdrfGRRtllllGaagmaicfvil 334
                  +  +++ fl d++G Rt++++ aa+ +icf++ 
  CTQ27459.1 154 LLGPLAGGFLADHWGLRTVFFMTAAVLFICFLFT 187
                 3344555567777777777777777777777665 PP

  == domain 3  score: 23.1 bits;  conditional E-value: 6.8e-09
                 HHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHH CS
    Sugar_tr  16 tgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGi 114
                 tg i+++ltl+   ++   ++s+ +       sg+i+s+  + a++++  +g+lgdr+G  k+l++a +++v   + + + +   +  +l + R+l+G 
  CTQ27459.1 233 TGSIAPILTLYV--RDLAGNVSNIA-----FISGMIASVPGIAALMSAPRLGKLGDRIGPEKILIVALIISVLLLIPMSFVQ---TPLQLGILRFLLGA 321
                 666666666665..44444444443.....457*******************************************999999...9************* PP

                 HHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHH CS
    Sugar_tr 115 gvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpall 183
                 + G+    v +++  +++ ++ g++ s++q++  +G + +  +g+ ++ + +   +r  + +++   l+
  CTQ27459.1 322 ADGALLPAVQTLLVYNSTSQISGRIFSYNQSFRDIGNVTGPLIGASVSANYG---FRAVFLVTAGVVLF 387
                 *********************************************9976666...55555555444433 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0  15.8   2.4e-14   1.1e-10       9     370 ..      22     365 ..      15     380 .. 0.73

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 2.4e-14
  MFS_1_like   9 FfffaalgsllPYltiylkskglkase.....igiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklevsva 102
                 F+  aa++ ++P+l +y ++ g++ +      +g++ +i  l+s +++p+wg laDr g++  +++ +l +++v++l  +                   
  CTQ27459.1  22 FLTGAAFSLVMPFLPLYVEQLGVTGHSalnmwSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMAIVMML--M------------------- 99 
                 78889*****************99765334448*************************9988888888888777777..3................... PP

  MFS_1_like 103 qdvdaektfwilfllvvlasfflaailvlldaatlkelgedrkdyGr.qrlfGsvGyaifafitG.ilidhysvnllpysallyvlaallvisllvvli 199
                    +  +++  ++ll++l   +l + ++ ++a++ +++  ++  ++  +   G+v+ a+  ++ G +l dh+   +    ++++++a+l+++ l+ +  
  CTQ27459.1 100 ---GMAQNIGQFLLLRALLG-LLGGFIPNANALIATQIPRHKSGWALgTLSTGAVSGALLGPLAGgFLADHWGLRT----VFFMTAAVLFICFLFTLFL 190
                 ...36677777777777765.56789999999999***77777777514457*******99987616668888854....3666666666666555444 PP

  MFS_1_like 200 lnetekesklkvtkslqvllnilknpe.viifllvalilgmswgiienFlflYL.kelgasntllGslvalgvvaeiplfffae...klleklGhvkll 293
                 + e     + k + s ++++  l+np+ v+ ++++ li++++ g i   l+lY  +  g  + ++ +  ++  v  i  ++ a    kl +++G +k+l
  CTQ27459.1 191 IRENFVPIARKEMLSAREVFSSLQNPKlVLSLFVTSLIIQVATGSIAPILTLYVrDLAGNVSNIAFISGMIASVPGIAALMSAPrlgKLGDRIGPEKIL 289
                 4444444455555567778888888882556888889*****************5444444444444445555556666666651116789******** PP

  MFS_1_like 294 iiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliG 370
                 i+al++ +l ++ +++++ +  + ++ +L g++ g+l  a+ +      + ++ +++ +  +++   +G+  G liG
  CTQ27459.1 290 IVALIISVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSTSQISGRIFSYNQSF-RDIGNVTGPLIG 365
                 *******************************999988777776666666666666665544444.455555555555 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4  22.4   6.3e-08   0.00028      62     397 ..      69     400 ..      44     408 .] 0.76

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 6.3e-08
       MFS_3  62 silaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgG 160
                 s + G laD   r+ +ll   l +a+v ++l+ +a  + +    ll  +ll  +G     P  +A +  +++r++   A    s g       GP  gG
  CTQ27459.1  69 SPFWGGLADRKGRKIMLLRSALGMAIV-MMLMGMA--QNIGQ-FLLLRALLGLLGGF--IPNANALIATQIPRHKSGWALGTLSTGAVSGALLGPLAGG 161
                 334599999977655555555555544.4444333..23333.34445566666764..6999****************9999999999999******* PP

       MFS_3 161 vlvaavGaalafavn.alsylalivallrwkrevrksslprEkllealraglRftaasreikavlvRaalFglsasavlaLLPlvardqld...gdalv 255
                  l    G  ++f ++ a+ ++  +++l  ++ +  +  + r ++l+a r+ +   +  + + + +v + +  +++ ++  +L l +rd  +     a +
  CTQ27459.1 162 FLADHWGLRTVFFMTaAVLFICFLFTLFLIRENFVP--IARKEMLSA-REVFSSLQNPKLVLSLFVTSLIIQVATGSIAPILTLYVRDLAGnvsNIAFI 257
                 ********9998765156788888999888877654..555555554.334444455566777789999******************976522034556 PP

       MFS_3 256 yGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalasslwvavlvlllgGaaWitalstlnvavqlavPrWvvgRalavYltvlaG 354
                  G++ +  G+ A+++a  l +L +r++ e+++ +a +   l l+ ++++++  ++ +   l+Gaa  + l  +++     + + + gR ++  +   + 
  CTQ27459.1 258 SGMIASVPGIAALMSAPRLGKLGDRIGPEKILIVALIISVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSTSQISGRIFSYNQSFRDI 356
                 67666667***********************************************99999*****9999999999999999999************999 PP

       MFS_3 355 glaaGsllWGavaealsvtlaLlaaaaalllaaa.illllklpe 397
                 g  +G l+   v+ +++ +   l++a  +l  a+  +l l+ p+
  CTQ27459.1 357 GNVTGPLIGASVSANYGFRAVFLVTAGVVLFNAIySTLSLRRPA 400
                 9999*************998877766665555440344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 3200.56
//
Query:       CTQ27460.1  [L=306]
Description: lauryl-acyl carrier protein (ACP)-dependent acyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.6e-117  391.2   0.0   2.9e-117  391.0   0.0    1.0  1  Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransfera


Domain annotation for each model (and alignments):
>> Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  391.0   0.0  1.6e-121  2.9e-117       2     295 .]       5     297 ..       4     297 .. 0.99

  Alignments for each domain:
  == domain 1  score: 391.0 bits;  conditional E-value: 1.6e-121
  Lip_A_acyltrans   2 kkfkkellhlrywlvwlgiavllllallPesvlrkilkglgrlaakflkrrrkiarkNLalvfpekseaerekiidksfesvgraivetirvaf 95 
                      +kf+++llh+rywl wlgi++l+l+++lP+++++++++++grla +f+krr+kia +NL+l+fpekse+er++++  +fesvg+ ++et++++f
       CTQ27460.1   5 PKFSPALLHPRYWLLWLGIGLLWLVVQLPYPLIYRLGNAIGRLAMRFMKRRAKIAYRNLELCFPEKSEQERHRMVVMNFESVGMGLMETGMAWF 98 
                      79******************************************************************************************** PP

  Lip_A_acyltrans  96 isdeeiakrveviglehikealaeeegvilllpHfanwelaglvlakqypglavvaenkknpllnqliislRerfggkllprknaikelikalr 189
                      ++ ++ia++++ ig ehi++++a+++g++l+++Hf+++e++++++++ +pg++v+++n+ np++++l++++R r+++++++rk+ +k++i+al+
       CTQ27460.1  99 WPVRRIARWTDTIGFEHIRDVQAQQRGILLIGIHFLTLEMGARMFGMNEPGIGVYRPND-NPVIDWLQTWGRLRSNKDMIDRKD-LKGMIRALK 190
                      ***********************************************************.************************.********* PP

  Lip_A_acyltrans 190 kgevvvllpDqdlgrkdsvfvpfFgepaatttspaklalktk.aavipvaiirkkdgskytvsvhPaldlssteDveqiaqalneilekeitaa 282
                      kgevv+++pD+d+g++ svf+p+F++++a+tts++++++k++ a+++p++++rk+dg++y++++ P+ ++ + +D+e++a+++n+i+e++i++a
       CTQ27460.1 191 KGEVVWYAPDHDYGPTASVFAPLFAVDQAATTSGTWMLAKMSkACIVPFVPRRKPDGKGYELIILPPECSPPLDDAETTAAWMNKIVEQCIMMA 284
                      ****************************************998*************************************************** PP

  Lip_A_acyltrans 283 Peqylwlhrrfkt 295
                      Peqy+wlhrrfkt
       CTQ27460.1 285 PEQYMWLHRRFKT 297
                      ************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2313.62
//
Query:       CTQ27461.1  [L=354]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-20   72.5   0.0    4.4e-20   71.8   0.0    1.4  1  UPF0176_N    UPF0176 acylphosphatase like domain
    1.8e-19   69.9  12.9      3e-19   69.1  12.9    1.4  1  Rhodanese_C  Rhodanase C-terminal
    8.3e-14   52.0   0.1    1.7e-13   51.0   0.1    1.5  1  Rhodanese    Rhodanese-like domain


Domain annotation for each model (and alignments):
>> UPF0176_N  UPF0176 acylphosphatase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   7.4e-24   4.4e-20       2      92 .]      25     117 ..      24     117 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 7.4e-24
   UPF0176_N   2 rvlsfYkFvpledpealaeelrelleelgllGrilvAeEGiNgtlavpeealeaflaalrs.deelsdlelklsls.seppFerlkvkvkkeI 92 
                 +++sfYk++++ dp+a+++ l  +l++l++ Gri++A+EGiN++++vp++++ea+ ++l   d+ l++l+++ +++ + ++F  l+ kv++ I
  CTQ27461.1  25 TTISFYKYFTIVDPQATRDALWVALTQLKVFGRIYLAREGINAQISVPQSNVEALREFLYGfDPALAGLRFNIAVEdDGKSFWVLRLKVRDRI 117
                 579**********************************************************999**********99789***********987 PP

>> Rhodanese_C  Rhodanase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1  12.9   5.1e-23     3e-19       2      63 ..     246     307 ..     245     308 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 5.1e-23
  Rhodanese_C   2 GklfVFDkRl..alksevvgkCieCgkpvdelrkrnCanedCnelvlvCeeCaeklkgvcseeC 63 
                  Gk+fVFD+R+  +++++v+++C++Cg+p+d  +++nC n+ C+ l+++C++Caek++g+cse+C
   CTQ27461.1 246 GKNFVFDERMgeRISNDVIAHCHQCGAPCD--THTNCLNDGCHLLFIQCPSCAEKFAGCCSEAC 307
                  9*********8877999*************..******************************** PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.1   2.8e-17   1.7e-13       2     105 ..     138     232 ..     137     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 2.8e-17
   Rhodanese   2 akelkellekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGG 100
                 a+e+ ++l++++++++D R+ +eYe gh ++A+ +         + + + ++lp++++ ++  ++k++v yc gg r + a a +k  G+++v++++GG
  CTQ27461.1 138 AAEVNAMLDDPDAVFIDMRNHYEYEVGHFENALEI---------PADTFRDQLPKAVEMMQDHKDKKIVMYCTGGIRCEKASAWMKHNGFNKVWHIEGG 227
                 6899********99*********************.........33333333333333334489*************77775556669*999******* PP

   Rhodanese 101 fkawk 105
                 + +++
  CTQ27461.1 228 IIEYA 232
                 98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2852.43
//
Query:       CTQ27462.1  [L=372]
Description: N-methyltryptophan oxidase, FAD-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-45  156.5   0.4    1.5e-45  156.3   0.4    1.0  1  DAO            FAD dependent oxidoreductase
    0.00057   19.2   0.0       0.58    9.4   0.0    2.1  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0096   16.1   0.1      0.027   14.7   0.1    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.011   15.0   0.0      0.016   14.5   0.0    1.3  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.011   14.5   0.0          3    6.5   0.0    2.1  2  HI0933_like    HI0933-like protein
      0.011   15.1   0.2      0.019   14.3   0.2    1.3  1  FAD_oxidored   FAD dependent oxidoreductase
      0.022   13.9   0.0      0.038   13.1   0.0    1.4  1  FAD_binding_2  FAD binding domain
      0.072   12.3   0.0       0.12   11.7   0.0    1.3  1  Thi4           Thi4 family
      0.098   11.7   0.1       0.14   11.2   0.1    1.2  1  GIDA           Glucose inhibited division protein A
       0.13   11.5   0.0        0.2   10.8   0.0    1.3  1  FAD_binding_3  FAD binding domain
       0.22   10.9   0.0       0.45    9.9   0.0    1.4  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
       0.24   11.2   0.0       0.36   10.7   0.0    1.3  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.3   0.4     1e-48   1.5e-45       1     350 [.       4     350 ..       4     352 .. 0.85

  Alignments for each domain:
  == domain 1  score: 156.3 bits;  conditional E-value: 1e-48
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTS.SGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiags.gaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeel 96 
                 d++iiG+G +G+++ y++ r+g  V+  +++  +++ g+ +++s+l++ ++ + +   ++++l+l+a+++++el+e  g +  ++rtG++ l+    + 
  CTQ27462.1   4 DLIIIGSGSVGAAAGYYARRAGlnVLMTDAHQPPHQeGSHHGSSRLIRHAYGEGE---KYVPLVLRAQQLWDELAEISG-EAVFERTGVINLGPA--SS 96 
                 789***************8889*********9999879999999***99775455...789****************88.599*********854..35 PP

                 HHHHHHHHHHHHTTTTEEEEEHHHHHHHSTT..STTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEE CS
         DAO  97 ealdkllallleagldaelldaeevrelepa..lpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttp.genda 192
                 + l++ +a+++++ l++e lda+ v++++p   lp+   a+f+p +g++  + ++    r a+++G+  l++++v ++ ++  ++ ++  +t  ge + 
  CTQ27462.1  97 AFLANVAASARAFQLEVEELDAQAVMQRWPEirLPDDYRAIFEPASGVLRSELAVETWIRLAREAGCAQLFNCPVSAIHHHA-DGITI--DTLdGEYHG 192
                 6676767777889999999***99******9775566789*************************************96653.44555..455588755 PP

                 EEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE.EEETTTTEEEEEETTSEEEEEESSE......EETTCSS...TSC CS
         DAO 193 adavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpe.tdddgrgvyvtprkdgrvlvGgtad......eesgddd...pev 280
                  +++ ++aG w++ ll   ++l  pi+pvr     ++   +   s+++++p +     +g+ +y +p +d+++++G +        +    ++   + +
  CTQ27462.1 193 -KKLLVSAGTWVTrLL---PDL--PIQPVRKVFAWYQADGR-Y-SSKNHFPAFTgELPNGDQYYGFPAEDNELKIGKHNGgqpistP----QErvaFGA 279
                 .99********98777...988..*******9999944433.3.456888888898899999**************98878854432....33334566 PP

                 SHHHHHHHHHHHHHHSGGGCGEEEEEEEEEE.ETTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHH CS
         DAO 281 deedidellealrklfPqlgdvlrkwaGlrp.lpdglpligetpgvkglylatGhsghGltlapatGklla 350
                  + d  e  + lr+++P++g  l+  ++ ++ ++d++++i+  pg ++ +l tG sghG+++ap+ G++++
  CTQ27462.1 280 VASDGSESFPFLRNVLPGIGGCLHGASCTYDnTVDEDFIIDTLPGRPDTLLITGLSGHGFKFAPVLGEIAS 350
                 67777789999*******99999********559********99999*********************976 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0012       1.8       1      27 [.       6      31 ..       6      38 .. 0.87
   2 !    9.4   0.0   0.00039      0.58     101     147 ..     168     214 ..     146     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylil 27
                 iIiG G  G aa++ +++agl ++l  
   CTQ27462.1  6 IIIGSGSVGAAAGYYARRAGL-NVLMT 31
                 8********************.67765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00039
  Pyr_redox_3 101 feeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGee 147
                  ++ V +++++++g +++t  ++y+ kk+++++G +    +++ p + 
   CTQ27462.1 168 NCPVSAIHHHADGITIDTLDGEYHGKKLLVSAGTWVTRLLPDLPIQP 214
                  789******************************98877777777665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.8e-05     0.027       1      28 [.       7      34 ..       7      38 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.8e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   I+G+G  G++a y++++ag++vl  +++
     CTQ27462.1  7 IIGSGSVGAAAGYYARRAGLNVLMTDAH 34
                   9**********************99988 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.1e-05     0.016       1      37 [.       3      45 ..       3     121 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-05
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEEE......TTHCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlve......legtcln 37
                 +d+++iG+G  G aa  ++++ag++v++ +      +eg +++
   CTQ27462.1  3 YDLIIIGSGSVGAAAGYYARRAGLNVLMTDahqpphQEGSHHG 45
                 689**************************65544444444444 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.003       4.5       2      33 ..       4      35 ..       3      41 .. 0.92
   2 ?    6.5   0.0     0.002         3     109     163 ..     148     200 ..     143     204 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.003
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 d+i+iG G  G  a   a+++g +Vl+ ++ +
   CTQ27462.1  4 DLIIIGSGSVGAAAGYYARRAGLNVLMTDAHQ 35
                 89*************************99875 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.002
                  HHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 109 edivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  e  v+++++ ++eag+    ++ v+++++++dg ++++t  ++e++ +kl+++ G
   CTQ27462.1 148 ELAVETWIRLAREAGCAQLFNCPVSAIHHHADG-ITIDT-LDGEYHGKKLLVSAG 200
                  55699************************9999.99999.89**********998 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   1.3e-05     0.019       1      30 [.       4      33 ..       4      36 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.3e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLvee 30
                  D++++G+g+ G aA + A raG +vl+++ 
    CTQ27462.1  4 DLIIIGSGSVGAAAGYYARRAGLNVLMTDA 33
                  99*************************986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.6e-05     0.038       1      33 [.       4      36 ..       4      47 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.6e-05
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   D+i+iGsG  G aA++ a++aGl+v++ +  q+
     CTQ27462.1  4 DLIIIGSGSVGAAAGYYARRAGLNVLMTDAHQP 36
                   89***********************99887765 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.7e-05      0.12      17      50 ..       2      34 ..       1      45 [. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.7e-05
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailers 50
                + D++i+G+Gs G +a+yy  ++ +l+v++ +++
  CTQ27462.1  2 QYDLIIIGSGSVGAAAGYYARRA-GLNVLMTDAH 34
                679***********999997766.**99987765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   9.1e-05      0.14       1      29 [.       4      33 ..       4      58 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.1e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE.E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi.t 29
                d+i+iG G  G +A + a r+G++vl+  +
  CTQ27462.1  4 DLIIIGSGSVGAAAGYYARRAGLNVLMTdA 33
                689***********************9852 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00014       0.2       2      40 ..       3      41 ..       2      48 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00014
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp 40
                   +d +I+G+G +G+ ++   ++aG +v++ + ++  ++++
     CTQ27462.1  3 YDLIIIGSGSVGAAAGYYARRAGLNVLMTDAHQPPHQEG 41
                   5789****************************9998876 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0003      0.45      39      77 ..       5      43 ..       2      52 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0003
                  EEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHH CS
  2-Hacid_dh_C 39 vGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeee 77
                  + iiG G++G a+  +++  g++v+++d ++ + +e ++
    CTQ27462.1  5 LIIIGSGSVGAAAGYYARRAGLNVLMTDAHQPPHQEGSH 43
                  679***************************988775444 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00024      0.36       4      44 ..       7      47 ..       4      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00024
                EE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH CS
     3HCDH_N  4 viGaGtmGagiaavfasagleVvlvdiseealekalekiek 44
                +iG+G +Ga   + + +agl+V ++d ++   +++ ++ ++
  CTQ27462.1  7 IIGSGSVGAAAGYYARRAGLNVLMTDAHQPPHQEGSHHGSS 47
                9*************************998777776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3054.07
//
Query:       CTQ27463.1  [L=84]
Description: biofilm regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-34  115.8   0.0    7.5e-34  115.6   0.0    1.0  1  BssS            BssS protein family
  ------ inclusion threshold ------
      0.036   14.3   0.0      0.048   13.9   0.0    1.2  1  Cu2_monooxygen  Copper type II ascorbate-dependent monooxygen


Domain annotation for each model (and alignments):
>> BssS  BssS protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   0.0   8.4e-38   7.5e-34       1      71 [.      11      81 ..      11      82 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 8.4e-38
        BssS  1 fPvvgwdistvdsydllmirlhylssedqkpeeaevgrtlvLttdvarqLisiLeagidkiEsseylkrdl 71
                +P+vgwdistvdsyd+lm+rlhy++  + + ++ae g+tl+Lttdvarq+isiLeagi+kiEs+ey+++++
  CTQ27463.1 11 HPLVGWDISTVDSYDALMLRLHYQNPTQENSNDAEIGQTLWLTTDVARQFISILEAGIAKIESGEYQENEY 81
                9******************************************************************9876 PP

>> Cu2_monooxygen  Copper type II ascorbate-dependent monooxygenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.3e-06     0.048      99     130 ..       8      39 ..       2      40 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.3e-06
  Cu2_monooxygen  99 ftlPeevGlpiGgdssskylvLevHYnnpelk 130
                     ++ ++ vG  i + +s+  l+L  HY+np+++
      CTQ27463.1   8 IQTHPLVGWDISTVDSYDALMLRLHYQNPTQE 39 
                     678889***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 682.65
//
Query:       CTQ27464.1  [L=83]
Description: DNA damage-inducible protein I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-29  100.5   0.1    5.8e-29  100.2   0.1    1.1  1  DinI      DinI-like family


Domain annotation for each model (and alignments):
>> DinI  DinI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.1   3.2e-33   5.8e-29       1      63 []      14      78 ..      14      78 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 3.2e-33
                -TTHHHHHHHHHHHHHHHH-SS..-EEEEEEESS-EEEEES--HHHHHHHHHHHHHHHHTHHHH- CS
        DinI  1 pagaiealeaELskRiqevfPd..aevrvrkasanglsveGaskedkeriseiLQetwesADdWl 63
                p+ga+eal++ELs+Ri e+fP   ++v+vr+as n+lsv Ga kedk+riseiLQetwesADdW+
  CTQ27464.1 14 PNGALEALNNELSRRIAEQFPAidSQVSVRYASGNQLSVFGALKEDKDRISEILQETWESADDWF 78
                89*******************888****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 710.03
//
Query:       CTQ27465.1  [L=348]
Description: dihydro-orotase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-22   79.9   0.0    2.9e-22   79.5   0.0    1.1  1  Amidohydro_1  Amidohydrolase family
     0.0039   17.0   0.1     0.0063   16.3   0.1    1.5  1  Amidohydro_2  Amidohydrolase


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0   3.2e-26   2.9e-22       8     300 ..      15     307 ..      14     313 .. 0.92

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 3.2e-26
                   EEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEESSEGGSGCCCSHHHHHHHHHHH CS
  Amidohydro_1   8 DaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilggkvsldrgsaetskasreklkag 104
                   D+H+Hl+++ ++ +      v p t++++ +  ++ +l  ++ttva+++a    + +++++a+ +   g             ++ + ++++ +    
    CTQ27465.1  15 DWHIHLRDDDMLKT------VVPYTSEFYGRAIVMPNLVPPVTTVAAAIA----YRQRIMDAVPA---G------------HDFTPLMTCYLTDSLD 86 
                   9********99999......******************************....***********...5............8999999999999999 PP

                   HHHHHHHCTTTCEE.EEEEECGTCCSHHH......HHHHHHHHHHHHTTEEEEEE..TSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEE CS
  Amidohydro_1 105 aaetikgkadgvvk.valapheapafsde......elkealkeakkrdlpvaiHa..letkgevedaeaafgetiehgthlevaeslglldeiklil 192
                   +ae+++g+++gv++ ++l+p+ a+++s        ++  +l+  +k ++p+ +H    + + +++d+ea f+et++++  ++ ++        k+++
    CTQ27465.1  87 PAELERGFNEGVFTaAKLYPANATTNSSHgvtstdAIMPVLERMEKLGMPLLVHGevTHAEIDIFDREARFIETVMEPLRQRLPGL-------KVVF 176
                   99999999******************988888888******************************************888888776.......**** PP

                   HCTCEEEHH..........HHHHHHHHHHHHCEE.........HHHHHHHHSEHHHHHHHHHHHHTSC.EEEEEECT........TSSCCGGHHHHH CS
  Amidohydro_1 193 ahgvhltpt..........eaellkerlkeagva.........hcpfsnsilrsgrealrkaldeGvk.vglgtDga........asgnslnlleel 261
                   +h+++ +++           a++++++l+ +++          +++ + ++ + + +alr+++ +G+   +lgtD+a        as+ ++     +
    CTQ27465.1 177 EHITTKDAAeyvrdgnellAATITPQHLMFNRNHmlvggirphLYCLPVLKRNIHQQALRELVASGFSrAFLGTDSApharhrkeASCGCA-----G 268
                   *******444666788899888999998766666888****************************7666**************99888888.....9 PP

                   HHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-T CS
  Amidohydro_1 262 rlalklqrgllyedeegglslkealrmaTingAkalgld 300
                    ++++++ g+++++ e +  l ++ +++++ng +++gl+
    CTQ27465.1 269 CFNAPTALGSYATVFEEMNALQHFEAFCSLNGPRFYGLP 307
                   9999999999999878878888899************95 PP

>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1     7e-07    0.0063     100     189 ..      88     179 ..       2     198 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7e-07
                   HHHHHHHHHTTECEEEEESSTTTCCTTTCGGH....HHHHHHHHHHT-EEEEE.....CHHHCHHHHHHHHHHHHHHHCCHHHHCTTSEEEESGG CS
  Amidohydro_2 100 aeleraveelgfkGvrlnphvggddllgdrld....rpifealeelglpvdihtGps.pewlfggpqettraiqplllsgvarkfPnlkivlaHg 189
                   aeler ++e  f + +l+p+    + ++   +     p++e++e+lg p+ +h G   +++   +++e    +    ++ + +++P+lk+v+ H 
    CTQ27465.1  88 AELERGFNEGVFTAAKLYPANATTNSSHGVTStdaiMPVLERMEKLGMPLLVH-GEVtHAEIDIFDREA--RFIETVMEPLRQRLPGLKVVFEHI 179
                   4555555666677777777776666666666688888****************.522322222222222..24556678888************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2605.50
//
Query:       CTQ27466.1  [L=186]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-54  181.3   0.3    1.1e-53  181.1   0.3    1.0  1  DUF1439   Protein of unknown function (DUF1439)
  ------ inclusion threshold ------
      0.025   13.6   0.0      0.037   13.0   0.0    1.2  1  B56       Protein phosphatase 2A regulatory B subunit (B56 fa
      0.038   14.2   0.1       0.05   13.8   0.1    1.2  1  DUF2993   Protein of unknown function (DUF2993)
          4    8.1   4.6         29    5.4   4.6    2.3  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> DUF1439  Protein of unknown function (DUF1439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.1   0.3   2.5e-57   1.1e-53       1     151 [.      27     178 ..      27     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 181.1 bits;  conditional E-value: 2.5e-57
     DUF1439   1 isEqelnkyLakkleiekkvglpgllkadvkledlqvqlgreerdkvalsarakvklsallgklkatlkltleakpsYdaekgaiyLkdlellslevep 99 
                 +sEqe+n++L+k++++ k++gl+g+++a+++l++l++ +gree++kv+ls++a+v+l++l+g++kat++l+l+a p++d+ekgai+L+++e+++ +v p
  CTQ27466.1  27 VSEQEINQALQKRNHFAKDIGLKGVADAHIELQNLTSAIGREEPGKVTLSGIANVDLNSLFGTQKATIDLKLKALPTFDREKGAIFLQEMEVVDAKVAP 125
                 8************************************************************************************************** PP

     DUF1439 100 eklegklkallpllnqslaqyLeeqPvYvLdeeksk.ealakklakdieVkpg 151
                 ekl++ ++allp+lnqsl++y+++qP+YvL+e+ s+ ealakk+ak+ieVkpg
  CTQ27466.1 126 EKLQSVIQALLPYLNQSLRSYFSQQPAYVLREDASTgEALAKKYAKGIEVKPG 178
                 ****************************************************9 PP

>> B56  Protein phosphatase 2A regulatory B subunit (B56 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.2e-06     0.037     262     317 ..      92     147 ..      87     153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.2e-06
         B56 262 evikgllkyWPitnsqKevlFLneleeileviepeefqkilkplfkrlakcissph 317
                  +i+  lk  P  + +K  +FL+e+e +  ++ pe++q++++ l+  l ++++s  
  CTQ27466.1  92 ATIDLKLKALPTFDREKGAIFLQEMEVVDAKVAPEKLQSVIQALLPYLNQSLRSYF 147
                 5677779999****************************************999875 PP

>> DUF2993  Protein of unknown function (DUF2993)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.1e-05      0.05      97     185 ..      24     150 ..      23     181 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
     DUF2993  97 tvtlteadlnralasp.........llitdlq.............dlsnggvkltgnn...............lpvvveaglrlaagdg.....qlrle 153
                 ++t++e+ +n+al+++         +    ++                +g v+l+g                 +++++ a  +++   g     +  +e
  CTQ27466.1  24 QYTVSEQEINQALQKRnhfakdiglK--GVADahielqnltsaigREEPGKVTLSG-IanvdlnslfgtqkatIDLKLKALPTFDREKGaiflqE--ME 117
                 689************99888777441..3333566566666677777777777777.35888888998877776666666667755555666534..99 PP

     DUF2993 154 ltdleaglglpes.avdlpaelldalleglsel 185
                 ++d++ +++  +s  ++l + l++ l++ +s++
  CTQ27466.1 118 VVDAKVAPEKLQSvIQALLPYLNQSLRSYFSQQ 150
                 999999999999999999999999999998885 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   4.6    0.0065        29       1      18 []       1      20 [.       1      20 [. 0.87

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0065
      LPAM_1  1 MKKillalgall..lLsGCs 18
                MKKil+a+ +++  lLsGC+
  CTQ27466.1  1 MKKILIAAALIVsgLLSGCN 20
                ****9999888888899997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1454.73
//
Query:       CTQ27467.1  [L=402]
Description: putative metabolite efflux permease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-31  109.6  49.6    2.2e-21   76.2  26.4    2.0  2  MFS_1       Major Facilitator Superfamily
     0.0055   15.6   6.4     0.0055   15.6   6.4    2.3  2  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2  26.4   2.4e-25   2.2e-21       6     231 ..      20     232 ..      16     233 .. 0.85
   2 !   39.5  20.3   3.6e-14   3.2e-10       3     175 ..     211     390 ..     209     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 2.4e-25
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfp 104
                 +l+ l++++++p++++   ++ g+++  +g++l+l  l++  + +++G+++drfG+++++++g+l+ a g++++++a+  w+l+++ +l+Glg+ ++ p
  CTQ27467.1  20 MLVVLGFFVVFPLISIRFVDQMGWAALMVGIALGLRQLVQQGLGIFGGAIADRFGAKPMIVTGMLMRAGGFAAMAVAHEPWVLWFSCILSGLGGTLFDP 118
                 6788999*********777***************************************************55555568889****************** PP

       MFS_1 105 agaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkal 203
                   aal+++++ + +rgr +++l++  s+Ga++g+llg++l+ ++ +r+v  + a++++ ++ + +++l     + ++ s+++        p++++++ +
  CTQ27467.1 119 PRAALVVKLVRPHQRGRFFSILMMQDSAGAVIGALLGSWLL-QYDFRLVCSAGAALFIACAAFNAWYL-----PAWKLSTVKT-------PIREGLGRV 204
                 *****************************************.99*****9999999999999888888.....5555555333.......666678888 PP

       MFS_1 204 lkdpvlwillialllfffgfsg....lltllp 231
                 l+d+ +  + ++l l+  g+++    ++ +lp
  CTQ27467.1 205 LRDKRF--VTYVLTLT--GYYMlavqVMLMLP 232
                 888855..33333333..55553344666666 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 3.6e-14
       MFS_1   3 laaflsalarsi....lgpalplalaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllllfasslwlllvlrvlqG 96 
                 ++++l+ +++++    ++++lp ++ +d   sp+++ +++++ a  ++ + +p++r+s++ f     l++gll++ l++l + ++ssl  l+ l +l  
  CTQ27467.1 211 VTYVLTLTGYYMlavqVMLMLP-IMVNDIAGSPAAVKWMYAIEATISLTLLYPIARWSEKrFRLEHRLMAGLLVMTLAMLPIGMTSSLQQLFTLICLFY 308
                 6677777777777777788889.9***********************************989666699999999999944444855555********** PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpee 175
                 +g+ ++ pa  +l a ++  + rg+++g+  +g ++G +lg++ gg+l +++      ++++++l++++++ f+  l++ + +
  CTQ27467.1 309 IGSIIAEPARETLGASLADARARGSYMGFSRLGLAFGGALGYAGGGWLFDAGKavgqPELPWLMLGAIGVITFLA-LWWQFSP 390
                 *************************************************88779*9*888889999999998883.3554444 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   6.4   6.2e-07    0.0055     250     374 ..      36     159 ..      12     167 .. 0.88
   2 ?   -3.7   4.6      0.44     4e+03     340     379 ..     324     362 ..     248     364 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.2e-07
  MFS_1_like 250 lYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapkslea 348
                  + +++g    ++G+++ l+ + +  l +f+  + +++G+  ++++++l+ +  f  +a+ +++w++ +  +L+g+   l+    +  v k++ ++ ++
  CTQ27467.1  36 RFVDQMGWAALMVGIALGLRQLVQQGLGIFGGAIADRFGAKPMIVTGMLMRAGGFAAMAVAHEPWVLWFSCILSGLGGTLFDPPRAALVVKLVRPHQRG 134
                 5889************************************************************************999999999999999999***** PP

  MFS_1_like 349 tgqgllsglyfglGralGsliGGllw 374
                 +  ++l +   ++G  +G+l+G  l 
  CTQ27467.1 135 RFFSILMM-QDSAGAVIGALLGSWLL 159
                 ****9965.5899******9995554 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.44
  MFS_1_like 340 kiapksleatgqgllsglyfglGralGsliGGllwdlksa 379
                  +a  ++++ ++g +s l   +G+alG   GG l+d  +a
  CTQ27467.1 324 SLADARARGSYMG-FSRLGLAFGGALGYAGGGWLFDAGKA 362
                 5666777777777.56778899999999999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2951.62
//
Query:       CTQ27468.1  [L=207]
Description: ribosomal-protein-S5-alanine N-acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-19   68.7   0.1      1e-18   68.4   0.1    1.1  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
    4.4e-09   36.7   0.0    5.6e-09   36.3   0.0    1.2  1  Acetyltransf_4  Acetyltransferase (GNAT) domain
    1.7e-08   34.7   0.0    2.3e-08   34.3   0.0    1.2  1  Acetyltransf_1  Acetyltransferase (GNAT) family
    2.2e-05   24.2   0.0    3.2e-05   23.6   0.0    1.2  1  Acetyltransf_8  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.26   11.3   0.0    1.4  1  FR47            FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.1   2.8e-22     1e-18       1     138 []      30     175 ..      30     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 2.8e-22
  Acetyltransf_3   1 RLlLrplteeDlealfelrsdpe.vmrylpepltleea.......eewlera...waeeseeegygwaivlkdtgv.iGsvglrdleeedee.ae 82 
                     RL++r + ++D+ +l+ ++++ + + +  p+++ ++++       +++        +  ++++++ +a+ ++++++ iG++++ ++ + +   + 
      CTQ27468.1  30 RLVVRLVHDRDAWRLADYYAENKaFLK--PWEPVRDDShcypsgwQAR---LsmiAEFHKQGSAFYFALLDPEEKEiIGVANFSNVVRGSFHaCY 119
                     899999999999999976666663554..7755555552355332222...244333344456699***88777766*******988776667** PP

  Acetyltransf_3  83 lgymlapsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     lgy ++++++g+G++ ea+ ++++y+ ++++++r++a++ ++N++S ++l +lGfe
      CTQ27468.1 120 LGYSIGEKWQGQGLMFEALTSAIRYMQRTQHIHRIMANYMPHNQRSGALLARLGFE 175
                     *******************************************************7 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.6e-12   5.6e-09       2     154 ..      34     194 ..      33     195 .. 0.77

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.6e-12
  Acetyltransf_4   2 raateeDakeilaiyaeyvvntait.....feyevssveefekfleal.d...sekeyvflvae..sdrivGyaylgqfkkrakdwkaelsvyla 85 
                     r++  +Da ++ + yae++   +++     ++  +      + +l+++ +   ++  + f  ++  + +i+G a  +++   +  +++ l + + 
      CTQ27468.1  34 RLVHDRDAWRLADYYAENKA--FLKpwepvRDDSHCYPSGWQARLSMIaEfhkQGSAFYFALLDpeEKEIIGVANFSNVVR-GSFHACYLGYSIG 125
                     66777777777777776422..33343355333332222233344444223337778888888887889********9998.9***********7 PP

  Acetyltransf_4  86 erdnnkeglgrelidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiDmi 154
                      ++ + +gl  e +++ + ++ + q+i++++a  +  n+ s +++++lGFe++g  k++  + g+w D++
      CTQ27468.1 126 -EKWQGQGLMFEALTSAIRYMqRTQHIHRIMANYMPHNQRSGALLARLGFEKEGYAKDYLLIDGQWRDHV 194
                     .789999999998888888888**********************************************97 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   6.5e-12   2.3e-08      16     117 .]      72     174 ..      50     174 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 6.5e-12
                     HHHHHHHHHHHHHHSTTCEEEEEEET...TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEH CS
  Acetyltransf_1  16 nedaseeefeesfsleaegllvaeed...geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveednd 106
                     ++ +   +    f+++ + +++a+ d    e+iG + ++ +      +a   ++ + ++++g+Gl  + l+ +++++ +   i++i++   ++n+
      CTQ27468.1  72 WQARLSMI--AEFHKQGSAFYFALLDpeeKEIIGVANFSNVVR-GSFHACYLGYSIGEKWQGQGLMFEALTSAIRYMQRTqHIHRIMANYMPHNQ 163
                     33333333..335556667777666644366**********99.77888888****************************888*****88899** PP

                     HHHHHHHHTTE CS
  Acetyltransf_1 107 aairlYeklGF 117
                     ++ +l+ +lGF
      CTQ27468.1 164 RSGALLARLGF 174
                     ******99**9 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0     9e-09   3.2e-05      48     141 ..      79     178 ..      60     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 9e-09
                     EEEETT.EEEEEEEEEEGGGCGGGGCS---TT-EE......EEEEESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHT CS
  Acetyltransf_8  48 iglldg.epvgyfeiYwakedelaeyydaepgdrG......iHlligeaeargkglttallralvhylfadprtrrvvvEPdvrNerairlleka 135
                     i++++    ++yf + +++e e+ ++ ++ +  rG      + + ige+++ g+gl+ + l++ ++y+ + +++ r+++   ++N+r+ +ll+++
      CTQ27468.1  79 IAEFHKqGSAFYFALLDPEEKEIIGVANFSNVVRGsfhacyLGYSIGEKWQ-GQGLMFEALTSAIRYMQRTQHIHRIMANYMPHNQRSGALLARL 172
                     55555425789************9999887777775222224456887666.******************************************* PP

                     T-EEEE CS
  Acetyltransf_8 136 Gfekek 141
                     Gfeke+
      CTQ27468.1 173 GFEKEG 178
                     ***987 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.2e-05      0.26      31      80 ..     126     177 ..     120     184 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.2e-05
                 GGG-SSSHHH.HHHHHHHHHHHH.S-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  31 pehrrrGlgs.rlvkalakeiae.rgktvllvvvasNtpsirlyeklGfeki 80 
                 ++ +++Gl    l++a+ +  ++   + +++   ++N++s +l+ +lGfek 
  CTQ27468.1 126 EKWQGQGLMFeALTSAIRYMQRTqHIHRIMANYMPHNQRSGALLARLGFEKE 177
                 5667777654145555555555533456899999***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1595.21
//
Query:       CTQ27469.1  [L=217]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-63  211.8   0.4    9.6e-63  210.7   0.2    1.6  2  DUF480        Protein of unknown function, DUF480
  ------ inclusion threshold ------
      0.051   14.1   0.1       0.12   12.9   0.1    1.6  1  DUF1843       Domain of unknown function (DUF1843)
        0.1   12.9   0.3       0.52   10.6   0.0    2.2  2  Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
       0.12   13.0   0.2         16    6.2   0.0    2.4  2  BST2          Bone marrow stromal antigen 2


Domain annotation for each model (and alignments):
>> DUF480  Protein of unknown function, DUF480
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.7   0.2   2.1e-66   9.6e-63       1     149 []       5     158 ..       5     158 .. 0.99
   2 ?   -1.6   0.0      0.59   2.7e+03      96      96 ..     182     182 ..     159     214 .. 0.48

  Alignments for each domain:
  == domain 1  score: 210.7 bits;  conditional E-value: 2.1e-66
                 B-HHHHHHHHHHHHHHHH-GGG-SEEHHHHHHHHT-SSS-SS-----HHHHHHHHHHHHHTTSEEEE..--SS--EEEE-HHHH....HT--HHHHHHH CS
      DUF480   1 LsaveaRvlgvLiEKeattPdqYPLslnalvaacNQkssRePvmelsesevqealdeLkkkklvseaseagsRvekyehrleea....lklseaelavl 95 
                 L+a+eaRv+g+L+EK++ttP+qYPLs+na+v+acNQk++RePvm+lsesevq+ ld+L k++ ++++s++g+Rv+kye+r++++    lkls+ e+av+
  CTQ27469.1   5 LTAHEARVIGCLLEKQVTTPEQYPLSVNAVVTACNQKTNREPVMSLSESEVQALLDTLVKRHYLRTVSGFGNRVTKYEQRFCNSefgdLKLSAGEVAVV 103
                 789********************************************************************************99999*********** PP

                 HHHHHH-SB-HHHHHHHHTTTS--SSHHHHHHHHHHHHHT...TSEEEE---TT- CS
      DUF480  96 alllLRGpqtageLrtrserlaefadveeveavLeelaeree.plvvklprepGk 149
                 ++llLRG+qt+geLr+r++r++ef+d++eve+vLe l++re+ p+v++lprepGk
  CTQ27469.1 104 TTLLLRGAQTPGELRSRAQRMYEFSDMAEVESVLEGLTTREDgPFVARLPREPGK 158
                 ****************************************999***********6 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.59
                 H CS
      DUF480  96 a 96 
                 a
  CTQ27469.1 182 A 182
                 1 PP

>> DUF1843  Domain of unknown function (DUF1843)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   2.7e-05      0.12      18      50 ..     170     204 ..     169     206 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.7e-05
     DUF1843  18 kMKalaaqaeqq..LaeygdiasaleqLkaEIAKl 50 
                  M++l+++ e+   L++ gd+++ +e+L+ E+A l
  CTQ27469.1 170 DMDTLITTVEALapLDDDGDLRARVEALEGEVAEL 204
                 58888887765333******************976 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.34   1.5e+03      28      72 ..      15      26 ..       4      67 .. 0.56
   2 ?   10.6   0.0   0.00012      0.52      55      78 ..     189     212 ..     165     217 .] 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.34
  Lzipper-MIP1 28 raLekalssssdgsllslstllpkkakellkeiallEeevvkLEq 72
                  ++Lek ++                                   Eq
    CTQ27469.1 15 CLLEKQVT---------------------------------TPEQ 26
                  55555552.................................1111 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00012
  Lzipper-MIP1  55 ellkeiallEeevvkLEqkllsLy 78 
                   +l++ ++ lE ev++L+ +l+sL 
    CTQ27469.1 189 DLRARVEALEGEVAELKARLDSLL 212
                   68999*****************96 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2     0.011        50      19      47 ..      14      42 ..       5      89 .. 0.80
   2 ?    6.2   0.0    0.0035        16      64      86 ..     190     212 ..     171     216 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.011
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2 19 trlLerqLtqaqeslreaeaqaatcnqtv 47
                  lLe+q t  ++  ++ +a +++cnq  
  CTQ27469.1 14 GCLLEKQVTTPEQYPLSVNAVVTACNQKT 42
                569***********************853 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0035
                 HHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  64 qqakvqelqgeikkLnqkLqdae 86 
                  +a+v+ l+ge+++L+ +L+  +
  CTQ27469.1 190 LRARVEALEGEVAELKARLDSLL 212
                 4689**************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1730.13
//
Query:       CTQ27470.1  [L=307]
Description: putative oxidoreductase with NAD(P)-binding Rossmann-fold domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-25   90.3   0.0    2.3e-25   89.7   0.0    1.3  1  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol
  ------ inclusion threshold ------
      0.025   13.9   0.0      0.055   12.8   0.0    1.5  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.0   2.6e-29   2.3e-25       1     120 []       5     122 ..       5     122 .. 0.98

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 2.6e-29
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-S CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPlat 97 
                   lr++++G+G i++k + p+  + + + + a+++p++e+a +++e+++++  ++l++l+a  ++dav+v t + +h+e++ ++l+ag+hv+++KPla+
    CTQ27470.1   5 LRIGVVGLGSIAQKAWLPVLGAAESWTLQAAWSPGKEKALRICETWRMPYADSLDALAA--QCDAVFVHTSTASHYEVVNHLLNAGVHVCVDKPLAD 99 
                   69*********999999******************************************..9*********************************** PP

                   SHHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  98 tveeakelvelaekkgklvsvgy 120
                   +++ea+ lvela+++  +++vg+
    CTQ27470.1 100 KLSEAETLVELAARRRLTLMVGF 122
                   *********************96 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.1e-06     0.055      38     101 ..       6      74 ..       3      87 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.1e-06
                   EEEEES-SHHHHHHHHHHH.HTT-EEE..EESSSHHHHH.CHHHHTC.EECSHHHHHHH-SEEEE-S-- CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlk.afgmkvi..aydrskkkee.eeeelgv.elvsleellaesDivslhlpl 101
                   ++G++GlG+I+q++   +  a +   +  a+++ k+k    +e+ ++ + +sl++l a++D v++h+  
    CTQ27470.1   6 RIGVVGLGSIAQKAWLPVLgAAESWTLqaAWSPGKEKALrICETWRMpYADSLDALAAQCDAVFVHTST 74 
                   79*********9865433314444333114445444333666666664577***************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2293.05
//
Query:       CTQ27471.1  [L=511]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-158  528.5  33.7   1.5e-158  528.1  33.7    1.1  1  MurJ             Lipid II flippase MurJ
    3.8e-10   40.0  20.9    3.8e-10   40.0  20.9    3.9  4  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai
  ------ inclusion threshold ------
       0.31   11.2  11.3      0.048   13.8   1.6    3.4  3  AWPM-19          AWPM-19-like family


Domain annotation for each model (and alignments):
>> MurJ  Lipid II flippase MurJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  528.1  33.7  2.5e-162  1.5e-158       1     450 [.      28     478 ..      28     480 .. 0.99

  Alignments for each domain:
  == domain 1  score: 528.1 bits;  conditional E-value: 2.5e-162
        MurJ   1 iaallGaglladaFnvAfklPnllrrlfaegalssaFvPvlaeak.kkdeekaaefvrkvltllilvlllvtligilaapllirllatgf..deetlel 96 
                 +a+++Gag+++daF+vAfklPnllrr+faega+s+aFvP+lae+k k+ e++++ fv++v++ll+l+l++vt+ig+laap++i ++a+gf  ++++++l
  CTQ27471.1  28 VARIFGAGMATDAFFVAFKLPNLLRRIFAEGAFSQAFVPILAEYKsKQGEDATRVFVSYVSGLLTLALAIVTVIGMLAAPWVITITAPGFadTADKFAL 126
                 699******************************************99********************************************99****** PP

        MurJ  97 avsllrillpylllvslsavfgavLnarkkFfapafsPvllNvsvIltllllanklgeeailaLaiGvliGgvlqllvqlpalkkaglllkprfafrde 195
                 +++llri++py+ll+sl++++ga+Ln++++F +paf+P++lNvs+I ++l++a++++  ++laLa++v++Ggvlql++qlp+lkk+g+l+ pr++ +d+
  CTQ27471.1 127 TTQLLRITFPYILLISLASLVGAILNTWNRFSVPAFAPTFLNVSMIGFALFAAPYFH-PPVLALAWAVTVGGVLQLAYQLPHLKKIGMLVLPRINLKDA 224
                 *********************************************************.***************************************** PP

        MurJ 196 glkkflklllptllgvsvsqlnllvdtalAsflaegsvsilayadrilqlPlglfgvsistvlLPrlSrsakekdedevrdllsqairltllllipvsf 294
                 g ++++k++ p++lgvsvsq++l+++t++Asfl +gsvs+++yadr++++P g++gv++ t+lLP+lS+s++++++de+ +l+++++rl++ll++p+++
  CTQ27471.1 225 GAMRVVKQMGPAILGVSVSQISLIINTIFASFLVSGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFASGNHDEYCRLMDWGLRLCFLLALPSAV 323
                 *************************************************************************************************** PP

        MurJ 295 gllvlskpivsllferGnFseedveataevLaayalgLipyalvklllrvfYAredtktPvkislislvlnillsllllpplgvvglalatslsaligl 393
                  l +l+kp++ +lf++G+Fs+ d+++t+++L ay++gL+ +++vk+l++ fY+r+d ktPvki++i+l+++++++l ++ pl+++gl+l+ +l+a++++
  CTQ27471.1 324 ALGILAKPLTVALFQYGKFSAFDAAMTQRALVAYSVGLMGLIVVKVLAPGFYSRQDIKTPVKIAIITLIMTQVMNLAFIGPLKHAGLSLSIGLAACLNA 422
                 *************************************************************************************************** PP

        MurJ 394 vllyvllrkrlklteargiktflaklvvllalaavvilllssltqaewvvgslllil 450
                 +lly++lrk++ +t++ g++ fl +l+++++++a+++l++ +l+  ew++g+++++l
  CTQ27471.1 423 ALLYWQLRKQKIFTPQPGWLAFLLRLIIAVLVMAAALLGVMHLMP-EWSLGTMPFRL 478
                 *********************************************.8*****99886 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.87   5.2e+03      92     103 ..      27      38 ..       7      66 .. 0.54
   2 ?   -1.6   0.4      0.42   2.5e+03      59     131 ..      96     103 ..      77     117 .. 0.46
   3 !    4.0  14.8    0.0078        47       1      86 [.     130     220 ..     130     292 .. 0.78
   4 !   40.0  20.9   6.4e-14   3.8e-10       1     142 [.     353     500 ..     353     501 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.87
  Polysacc_synt_C  92 lkpllaalvmgi 103
                      ++  +++++m+ 
       CTQ27471.1  27 IVARIFGAGMAT 38 
                      333333333333 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.42
  Polysacc_synt_C  59 aiatvlallvvavlnlyalrrllgiklellrrllkpllaalvmgivvylllllllgllllaalalllavlvga 131
                      ai tv                                                                 +g+
       CTQ27471.1  96 AIVTV-----------------------------------------------------------------IGM 103
                      11111.................................................................111 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0078
  Polysacc_synt_C   1 vLailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllliplfg..ivGaaiatvlallvvavlnlyalrrllgikl...e 86 
                      +L+i  ++i+++sl++++++iL+  +r   ++ a  +  +  +++ l+  p+f   ++  a+a +++ ++ ++++l +l+++  + l   +
       CTQ27471.1 130 LLRITFPYILLISLASLVGAILNTWNRFSVPAFAPTFLNVSMIGFALFAAPYFHppVLALAWAVTVGGVLQLAYQLPHLKKIGMLVLpriN 220
                      58999************************************************8557***********************98777775441 PP

  == domain 4  score: 40.0 bits;  conditional E-value: 6.4e-14
  Polysacc_synt_C   1 vLailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllliplfgivGaaiatvlallvvavlnlyalrrllgikl..ellrrll 92 
                      +L+ ++++++ l +  vl+  + +    k+++k+++i++++  ++nl +i  +   G ++++ la ++ a+l+++ lr++  + +   +l  ll
       CTQ27471.1 353 ALVAYSVGLMGLIVVKVLAPGFYSRQDIKTPVKIAIITLIMTQVMNLAFIGPLKHAGLSLSIGLAACLNAALLYWQLRKQKIFTPqpGWLAFLL 446
                      588999999999999***********************************99*9*******************************999999999 PP

  Polysacc_synt_C  93 kpllaalvmgivvylllllllglllla....alalllavlvgalvYlllllllr 142
                      ++++a+lvm+++++++++l+++ +l+     ++ ll+ v++g+++Y++ ll+l+
       CTQ27471.1 447 RLIIAVLVMAAALLGVMHLMPEWSLGTmpfrLMRLLAVVIAGVVAYFATLLVLG 500
                      ************9999999988888779886669999999***********987 PP

>> AWPM-19  AWPM-19-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       0.6   3.6e+03      72      72 ..     100     100 ..      59     130 .. 0.61
   2 ?    2.6   0.3     0.023   1.4e+02      59     138 ..     321     401 ..     292     408 .. 0.70
   3 ?   13.8   1.6   8.1e-06     0.048      56     108 ..     446     506 ..     412     511 .] 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.6
     AWPM-19  72 l 72 
                 +
  CTQ27471.1 100 V 100
                 1 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.023
     AWPM-19  59 lagvvGvasklaglnhvrawraesLaaaas.salvawaltlLAmGl.ackeielggargkrlrt.lEaltiilaltqLlyvla 138
                  a ++G+ +k  ++   +  + + + aa++  alva+++ l  mGl  +k +  g +  + ++t +   +i+l +tq++ ++ 
  CTQ27471.1 321 SAVALGILAKPLTVALFQYGKFSAFDAAMTqRALVAYSVGL--MGLiVVKVLAPGFYSRQDIKTpVKIAIITLIMTQVMNLAF 401
                 45667888888777777777778887776526899999988..5551456666666777777774666677788888876655 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 8.1e-06
     AWPM-19  56 fallagvvGvasklaglnhvra........wraesLaaaassalvawaltlLAmGlackei 108
                 + l+ +v+ +a++l g++h+          +r   L a + +++va+ +tlL +G+ +ke 
  CTQ27471.1 446 LRLIIAVLVMAAALLGVMHLMPewslgtmpFRLMRLLAVVIAGVVAYFATLLVLGFRVKEF 506
                 3466667778888888888765555555667888999**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       901  (0.0502538); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 3478.17
//
Query:       CTQ27472.1  [L=404]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-29  102.5  55.5    1.5e-25   89.9  42.7    2.1  2  MFS_1      Major Facilitator Superfamily
    0.00077   18.9  45.3     0.0021   17.4  44.7    2.0  1  MFS_4      Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
        1.4    9.2   8.6       0.21   11.8   1.6    2.9  2  TetR_C_16  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9  42.7   2.5e-29   1.5e-25       1     323 [.      18     326 ..      15     334 .. 0.84
   2 !   18.4   4.9   1.4e-07   0.00082     116     172 ..     337     391 ..     334     402 .. 0.88

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 2.5e-29
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 l+l+a +s ++++ + p+lp +++ +l++++  +gl+ tl  +g+a+++l+l +l+dr+ rrr++l+  +l+al lll+++ ++ +  llv+ +l G++
  CTQ27472.1  18 LALGAGFSVASIYYAQPLLP-LMGANLHLTVEGMGLVPTLTQAGYALGILFLLPLGDRHDRRRLILVKSALLALLLLLCSL-TGQPsSLLVVSLLIGMA 114
                 56888889999999999***.9*****************************************777766666666466667.666667**********9 PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplv 197
                  ++++  ++ ++a ++p  ++g+++g +++g  lG++l   ++g++ + +gWr+++ ++a+  +l +++  ++ + ++ + +   + ++      a+++
  CTQ27472.1 115 -ATMAQDIVPAAAILAPAGKQGKMVGTVMTGLLLGILLSRTVSGVVGAVFGWRVMYQAAAVSVALIGLV--MWRVLPRFAVHSTLSYPQ----LMASMA 206
                 .799999999999999999******************************************99999998..999999999999999899....677777 PP

       MFS_1 198 pawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallav 296
                  +w+   + +   +l  ++l+  ++fs++ ++l ++l e++++++++ +g  +++++++ga +a+lag l+d++g+ + + ++ +l++l+++++++l++
  CTQ27472.1 207 HLWQRYPALRRA-ALAQGALS--IAFSAFWSTLAVMLSEHYHMGSAVAGG--FGIAGAAGALAAPLAGGLADKFGAGKVTQMGAALVTLSFALMFVLPL 300
                 744444433322.14444444..49999999999999*******669999..*********************************************** PP

       MFS_1 297 tssavllllvlvliGfglgfvfpslla 323
                     ++ l++++l  +g+ +   s+l+
  CTQ27472.1 301 L-PVHAQLALIALSAIGFDLGLQSSLV 326
                 *.5555555555544455544444444 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.4e-07
       MFS_1 116 keergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll 172
                 ++ rgr ++ll + + +G+ lg +lg+ l+ ++gW +v  ++ i ++la+   + ll
  CTQ27472.1 337 PQARGRLNALLFTVVFIGMSLGSVLGSKLYVLAGWNGVVTLAVITGALALA--IRLL 391
                 679***********************************9999999999944..3544 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4  44.7   3.5e-07    0.0021      13     357 ..      33     388 ..      18     392 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.5e-07
       MFS_4  13 tpiLPallaegqlslsqagllaaaNylGYLvGallaa.falsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvl.vfgsslvlah 109
                  p+LP + a+++l++  +gl+ +   +GY +G l+ +  + ++++ Rl +l+   + +llll ++lt + + +l++ +l G+a+ ++  ++ ++ +la 
  CTQ27472.1  33 QPLLPLMGANLHLTVEGMGLVPTLTQAGYALGILFLLpLGDRHDRRRL-ILVKSALLALLLLLCSLTGQPSSLLVVSLLIGMAATMAQdIVPAAAILAP 130
                 49******************************9976425677777777.5555556667888899******************9987546666666666 PP

       MFS_4 110 aaaarrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllp..raalreasaaaeaakae..qkslpllalllaYglaG 204
                   a +++++ + +  G  lGi++s ++  ++ +++ ++ ++++a+av  a++ l+++ +lp  + +++ +  ++ a+ a+  q+  +l++ +la g   
  CTQ27472.1 131 --AGKQGKMVGTVMTGLLLGILLSRTVSGVVGAVF-GWRVMYQAAAVSVALIGLVMWRVLPrfAVHSTLSYPQLMASMAHlwQRYPALRRAALAQGALS 226
                 ..6788899999************98776655554.566678888777777778899999944444444555554444441134446778899999999 PP

       MFS_4 205 fGYiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgv....llsll..spsplglivssvllGltflait 297
                 +++ +    l  +  ++ +   + a    ++G a ++++ +   +a++ g+++++ +  ++  ++     +l+ll     ++++++s++++ l      
  CTQ27472.1 227 IAFSAFWSTLAVMLSEHYHMGSAVAGGFGIAGAAGALAAPLAGGLADKFGAGKVTQMGAALVTLSFalmfVLPLLpvHAQLALIALSAIGFDLGLQSSL 325
                 999888888888888874444444555678899999999899999999999999876555544444001144443213456778899999988888888 PP

       MFS_4 298 alvlqlarelappatrrllglmTasfgigQilGpllasllaeat...gslalallvaaaalvl 357
                     +l+  l p+a+ rl +l+ ++  ig  lG +l s l+  +   g ++la++ +a al++
  CTQ27472.1 326 VAHQNLVYGLEPQARGRLNALLFTVVFIGMSLGSVLGSKLYVLAgwnGVVTLAVITGALALAI 388
                 88889999999****888887755555888888888887665541116788888888888876 PP

>> TetR_C_16  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3      0.27   1.6e+03      67      79 ..     105     117 ..     102     132 .. 0.84
   2 ?   11.8   1.6   3.5e-05      0.21      59     106 ..     165     212 ..     142     212 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHH CS
   TetR_C_16  67 lvasqllGlalaR 79 
                 lv+s+l+G+a ++
  CTQ27472.1 105 LVVSLLIGMAATM 117
                 899******9886 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.5e-05
                 TTHHHHHHHHHHHHHHHHHHHHTS--TTCCCS-HHHHHHHHHHHHHHH CS
   TetR_C_16  59 pdaelRaalvasqllGlalaRyvlrleplasasreelvalvgptlqry 106
                  +    aa v  +l+Gl++ R + r+    ++s ++l+a ++ + qry
  CTQ27472.1 165 WRVMYQAAAVSVALIGLVMWRVLPRFAVHSTLSYPQLMASMAHLWQRY 212
                 46677899**************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       871  (0.0485805); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2992.21
//
Query:       CTQ27473.1  [L=311]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-37  127.6   4.7    5.5e-37  127.2   4.7    1.2  1  LysR_substrate  LysR substrate binding domain
    3.1e-17   62.3   0.4    5.8e-17   61.4   0.4    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0033   17.2   0.6      0.016   15.0   0.3    2.3  2  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   4.7   9.3e-41   5.5e-37       3     206 ..      95     297 ..      93     300 .. 0.91

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 9.3e-41
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE. CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv. 96 
                     ++ g Lr+ ap++++++ l   l +f++r+P++++e   +d  + +d l ++ +D+air g + d+  +++ Lae p+++vasp+  La+  p+ 
      CTQ27473.1  95 RPVGVLRVRAPHAFGQQQLLAPLVAFLQRHPQLSVEWMLND--NTVDFLSDN-IDCAIRVGAEVDPATVSVLLAEVPRCVVASPEL-LAKYPPLt 185
                     678************999999999*****************..********9.********************************9.9**99999 PP

                     CGGGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEE CS
  LysR_substrate  97 sledLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyr 188
                     sle+L ++p+i  +  +    r + ++  +    ++++ l+++sl  +++ ++aGlG+a++++++v +++a+grl+   +p++++   +++lvy+
      CTQ27473.1 186 SLEALSGLPWIAINTFYQheVRLRHQASGQIVSTAITPCLSTDSLYVARNTALAGLGVAMVSSWTVVEDIAAGRLI-ELFPQWRPAsLPVHLVYP 279
                     ************875555444444444444456666****************************************.******8888******** PP

                     TTCCCHHHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidflre 206
                       r+ + ++r f+d++re
      CTQ27473.1 280 WARYYPTRLRKFLDLMRE 297
                     ****************98 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.4   9.7e-21   5.8e-17       2      60 .]      11      69 ..      10      69 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 9.7e-21
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                +++r+ + ++e+gs+++AA ++ ++q++vsr++++LE +lgv+L+ Rt++ ++LT+ Ge
  CTQ27473.1 11 ELMRTYIRIVEAGSLSAAAGQMDTTQATVSRRLQSLEGLLGVKLILRTTHAMKLTDDGE 69
                789******************************************************97 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3   2.7e-06     0.016       6      44 ..      14      54 ..       6      65 .. 0.83
   2 ?   -1.1   0.0      0.28   1.7e+03      21      29 ..     229     237 ..     227     241 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.7e-06
                HHHH..HTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30  6 rayl..enggnisatAkaLhvHrnTlryRLrrieellgldl 44
                r+y+   + g++sa+A ++     T++ RL+ +e llg+ l
  CTQ27473.1 14 RTYIriVEAGSLSAAAGQMDTTQATVSRRLQSLEGLLGVKL 54
                555543578*****************************986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.28
                 HHTS-HHHH CS
      HTH_30  21 aLhvHrnTl 29 
                 +L+v rnT 
  CTQ27473.1 229 SLYVARNTA 237
                 79******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2341.01
//
Query:       CTQ27474.1  [L=1077]
Description: fused ribonucleaseE: endoribonuclease; RNA-binding protein; RNA degradosome binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-93  312.8   0.4    3.2e-93  312.0   0.0    1.6  2  RNase_E_G  Ribonuclease E/G family
    1.5e-16   60.5   0.0    3.9e-16   59.1   0.0    1.8  1  S1         S1 RNA binding domain
    6.7e-16   57.4   5.9    6.7e-16   57.4   5.9    2.7  2  PNPase_C   Polyribonucleotide phosphorylase C terminal


Domain annotation for each model (and alignments):
>> RNase_E_G  Ribonuclease E/G family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.0   0.0   5.4e-97   3.2e-93       1     269 [.     121     391 ..     121     392 .. 0.98
   2 ?   -4.0   0.7       1.3   7.6e+03      58     119 ..     705     729 ..     670     757 .. 0.51

  Alignments for each domain:
  == domain 1  score: 312.0 bits;  conditional E-value: 5.4e-97
   RNase_E_G   1 slaGrylVllpegkk.vgvSkkiedeeererlkelleelk.peevGlIvRtaaegaseeelekdleelkkkweeilekakkrkapsllyeeedlllrvl 97 
                 slaG+ylVl+p++ +  g+S++ie  ++r++lke+l++l+ p+++GlIvRta+ g+s+e+l+ dl++  k+we i+++a++r ap l+++e+++++r+ 
  CTQ27474.1 121 SLAGSYLVLMPNNPRaGGISRRIEG-DDRTELKEALASLElPDGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAF 218
                 89*********555559********.77********9999899******************************************************** PP

   RNase_E_G  98 rdllnedieeivvddkelyeeikeyl.eevapeleekvelyeeeeplfelysiekqiekalsrkvwlksGgylvIeqTEAltvIDVNsGkftgkknlee 195
                 rd+l++di ei++d+++++e +++ + +  +p+ ++k++ly++e plf++y+ie+qie+a++r+v l+sGg++vI++TEAlt+ID+Ns+++t+  ++ee
  CTQ27474.1 219 RDYLRQDIGEILIDNPKVLELARQHIaALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE 317
                 ***********************99988899**********9999****************************************************** PP

   RNase_E_G 196 tvlktNleAaeeiarqlrLRnlgGiIviDFIdmkeeenreevleelkealkkDraktqvleitklgLveitRkr 269
                 t+++tNleAa+eiarqlrLR+lgG+IviDFIdm+  +++++v ++l+ea+++Dra++q+++i+++gL+e++R+r
  CTQ27474.1 318 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQR 391
                 *************************************************************************9 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.3
   RNase_E_G  58 elekdleelkkkweeilekakkrkapsllyeeedlllrvlrdllnedieeivvddkelyeei 119
                 + +++++  +++   ++e+                                      + e++
  CTQ27474.1 705 QAQQEAKAQTREEPVVQETE-------------------------------------QEERV 729
                 33333333333322222222.....................................22222 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   6.5e-20   3.9e-16       2      74 ..      36     118 ..      35     119 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 6.5e-20
                 STTTCEEEEEEEEEET..TEEEEEETTTEEEEEEGGGSSSS........CEESCHHHCEETTEEEEEEEEEEETTTTEEEEEE CS
          S1   2 pekgevveGeVtsvtk..gGafVelgngvegfvpaselsrd........arvedpdevlkvGdevkvkvlkvdkdrrriilsi 74 
                 ++k ++++G++t++++  ++afV++g++ +gf+p++e++r+        + ++++++vl++G+ev v+++k ++ +++++l++
  CTQ27474.1  36 QKKANIYKGKITRIEPslEAAFVDYGAERHGFLPLKEIAREyfpanynaHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118
                 789***************************************************************************99986 PP

>> PNPase_C  Polyribonucleotide phosphorylase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.9     0.014        84      27      36 ..    1020    1029 ..    1017    1030 .. 0.88
   2 !   57.4   5.9   1.1e-19   6.7e-16       1      37 []    1038    1074 ..    1038    1074 .. 0.97

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.014
                  EEEEE-SB-- CS
    PNPase_C   27 shatspatkp 36  
                   hat+p+t++
  CTQ27474.1 1020 RHATAPMTRA 1029
                  6*******98 PP

  == domain 2  score: 57.4 bits;  conditional E-value: 1.1e-19
                  XXXXXXXXXXXXXXXXX--SSGGG-SEEEEE-SB--- CS
    PNPase_C    1 pveiseWqrpaYyFeGKGsAGghsAtshatspatkpe 37  
                  ++++s W+rp ++FeGKG+AGghsAt+ at+++t+p+
  CTQ27474.1 1038 APRHSTWVRPPFAFEGKGAAGGHSATHKATAEPTRPQ 1074
                  69**********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1077 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1770  (0.0987227); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                       137  (0.00764125); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.21u 0.33s 00:00:01.54 Elapsed: 00:00:00.49
# Mc/sec: 6635.26
//
Query:       CTQ27475.1  [L=331]
Description: 23S rRNA pseudouridylate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-30  105.6   0.1    4.5e-30  104.9   0.1    1.4  1  PseudoU_synth_2  RNA pseudouridylate synthase
    2.8e-11   43.0   0.4    5.2e-11   42.1   0.4    1.5  1  S4               S4 domain
  ------ inclusion threshold ------
       0.08   12.8   0.1       0.15   11.9   0.1    1.4  1  RNaseH_pPIWI_RE  RNaseH domain of pPIWI_RE
      0.084   12.9   0.0       0.21   11.7   0.0    1.6  1  TGS              TGS domain


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.1   9.9e-34   4.5e-30       1     159 [.     115     263 ..     115     264 .. 0.92

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 9.9e-34
  PseudoU_synth_2   1 dlvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeega 94 
                      +++v+nKP+g +v+++         +  +  +  ++e + l lvhRLD++tsG+ll+Ak + a++ l++++++++++K Ylalv+g+  + ++ 
       CTQ27475.1 115 HILVLNKPSGTAVHGGS----GLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKV 204
                      689**************....3333333444444599999****************************************************** PP

  PseudoU_synth_2  95 ikkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                      +++++ k +  q+g r  +  ++gk ++t++kv ++      + ++lv+++++tGr+hQiRvh +
       CTQ27475.1 205 VQAPLLK-NILQSGERIVRVSQEGKPSETRFKVEERY-----EFATLVRCSPVTGRTHQIRVHTQ 263
                      *******.99999************************.....*********************86 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.4   1.1e-14   5.2e-11       1      48 []      34      80 ..      34      80 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 1.1e-14
                EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4  1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48
                +R+d++l  ++++  ++ ++++ ++G V+VN+k+vk p y++++gD++
  CTQ27475.1 34 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVK-PEYKLEAGDEV 80
                6******99999999*********************.*********98 PP

>> RNaseH_pPIWI_RE  RNaseH domain of pPIWI_RE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.4e-05      0.15      85     158 ..     152     236 ..     145     248 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.4e-05
  RNaseH_pPIWI_RE  85 qevlseklrdr.ptlllvda.qnlrqlWpwLqdgrlgrdplrlgqasllpaqrlaeeg.........lrlVRirdgag.getpqwv 158
                      + v +   rd+  +ll++ + ++lr+l   L+d+ +++d l l   +++ +++  + +          r+VR+ ++++  et   v
       CTQ27475.1 152 ELVHRL-DRDTsGVLLVAKKrSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQAPllknilqsgERIVRVSQEGKpSETRFKV 236
                      444444.4444045566666899****************************999887799999999999****9998877776555 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.6e-05      0.21      38      58 ..      62      82 ..      60      83 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.6e-05
                EECSEEEETTSBB-SSEEEEE CS
         TGS 38 lVnGqrvgldhvLedgdvveI 58
                +Vn++rv  +++Le gd v+I
  CTQ27475.1 62 RVNKKRVKPEYKLEAGDEVRI 82
                8******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2376.37
//
Query:       CTQ27476.1  [L=194]
Description: hypothetical protein CH1034_180163 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-49  165.4   0.0    1.1e-48  165.2   0.0    1.0  1  Maf       Maf-like protein


Domain annotation for each model (and alignments):
>> Maf  Maf-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.2   0.0   6.1e-53   1.1e-48       2     165 ..       4     186 ..       3     187 .. 0.96

  Alignments for each domain:
  == domain 1  score: 165.2 bits;  conditional E-value: 6.1e-53
                 EEEE---HHHHHHHHCT-..EEEE------.......HHHHHHHHHHHHHHHHH.....TCEEEEEEEEEE...CE---SSHHHHHHHHHHHTTSEEEE CS
         Maf   2 liLASaSprRkelLeqlg..fevvpsdvde.......aeelvlrlAeaKaeava.....alvigaDtvvvl...ilgKPkdeeealemLkklsgrthev 83 
                 liLAS+Sp+R+ lLe+lg  fe+ ++dvde       a++lv+rlA+aKa+++a     +l+ig+D+v+vl   i gKP++ee+a+++L+k sg+  ++
  CTQ27476.1   4 LILASTSPWRRMLLEKLGlpFECAAPDVDEtprpdesARQLVTRLAQAKAQSLAtrfpnHLIIGSDQVCVLdgeITGKPHTEENARRQLRKASGSIITF 102
                 8*****************999**************9*8899******************99*********97766************************ PP

                 EEEEEEEE..EEE..EEEEEEEEEE----HHHHHHHHHCTSGCCSTTS--TTCGGGGGCEEEECS.-HHHHHT--HHHHHHHHCC CS
         Maf  84 vTgvavlk..ekevksfvettevtfkelsdeeieaYvatgepldkAGaygiqgllglalverieG.sysnVvGLPlaellelLke 165
                 +Tg+a+++  +++ ++++e  +v+f++lsd+eie Yv++++pl++AG+++ +gl g++l+er+eG +++++vGLPl +l+++L++
  CTQ27476.1 103 YTGLALYNsaSGHLQTECEPFDVHFRHLSDKEIEGYVRKENPLQCAGSFKSEGL-GITLFERLEGrDPNTLVGLPLIALCQMLRR 186
                 **********7788999************************************8.999*****886899**************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1441.59
//
Query:       CTQ27477.1  [L=173]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-20   71.1   0.6    1.2e-19   70.6   0.6    1.3  1  YceD      Large ribosomal RNA subunit accumulation protein Yc
  ------ inclusion threshold ------
      0.019   14.5   0.2       0.04   13.4   0.2    1.6  1  DUF2688   Protein of unknown function (DUF2688)


Domain annotation for each model (and alignments):
>> YceD  Large ribosomal RNA subunit accumulation protein YceD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.6   1.4e-23   1.2e-19       2     121 .]      62     171 ..      61     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 1.4e-23
        YceD   2 dgrvsatvtleCdrClepvelpldveftelfveeeeeaedeedeedeedeeeila.eedeiDlselireelllalPlkplck.pdckgeklcsqcganl 98 
                 +g +++tvtleC+rC +p++  ++ ++    v+++e+ae+   +   e +e+i + e +eiDl++++++e++l+lP+ p+++ + c+ +    + g+  
  CTQ27477.1  62 TGDAKVTVTLECQRCGKPFSHHVHTTYCFSPVRNDEQAEAL--P---EAYEPIEVnEFGEIDLQAMVEDEIILSLPVVPVHDsEHCEVSDADMVFGELP 155
                 68899***************998888777666777776555..5...889999988999**********************855888888888888854 PP

        YceD  99 neeecdceeekedprfaaLkkLk 121
                 +e      ++k++p fa+L+ Lk
  CTQ27477.1 156 EE------AQKPNP-FAVLASLK 171
                 44......4699**.******98 PP

>> DUF2688  Protein of unknown function (DUF2688)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   4.5e-06      0.04       6      23 ..      69      86 ..      65      96 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.5e-06
     DUF2688  6 VtTqCrRCGkslstlsrS 23
                Vt +C+RCGk+ s   + 
  CTQ27477.1 69 VTLECQRCGKPFSHHVHT 86
                899********9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1372.56
//
Query:       CTQ27478.1  [L=57]
Description: 50S ribosomal protein L32 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-19   69.1   0.6    3.2e-19   68.9   0.6    1.0  1  Ribosomal_L32p  Ribosomal L32p protein family


Domain annotation for each model (and alignments):
>> Ribosomal_L32p  Ribosomal L32p protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.6   1.8e-23   3.2e-19       1      56 []       2      57 .]       2      57 .] 0.98

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 1.8e-23
                    S--SS---HHHHHHHGGGT-----.-EEEETTTCCEECTTC-BTTTTBSSSBXSXXX CS
  Ribosomal_L32p  1 AVPKrKtSksrrrkRrahwklkap.nlvecpncgelklpHrvcpscGyYkgreviek 56
                    AV+++K ++s+r++Rr+h++l+a  +l+++++ ge +l+H+++ + G+Y+gr+vi+k
      CTQ27478.1  2 AVQQNKPTRSKRGMRRSHDALTAVtSLSVDKTSGEKHLRHHITAD-GFYRGRKVIAK 57
                    9********************************************.********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 431.21
//
Query:       CTQ27479.1  [L=386]
Description: fatty acid/phospholipid synthesis protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.9e-126  420.9   0.0   3.3e-126  420.7   0.0    1.0  1  FA_synthesis  Fatty acid synthesis protein


Domain annotation for each model (and alignments):
>> FA_synthesis  Fatty acid synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  420.7   0.0  1.9e-130  3.3e-126       2     323 .]      26     352 ..      25     352 .. 0.99

  Alignments for each domain:
  == domain 1  score: 420.7 bits;  conditional E-value: 1.9e-130
                   EEEEESS-STTTTHHHHHHHHHHHHH-TTEEEEEEE-HHHHHTT--S...--TT.EEEEE--B---TTS-HHHHHHH-TTBHHHHHHHHHHTTS-SE CS
  FA_synthesis   2 kiavdamGgdhgpeevvkgvelaakeaddleivlvGdkeeiepllkk.eeeakskleivhaedviemeekpvaavrkkkdssmavalelvkegeada 97 
                   ++a+d+mGgd+gp+ +v ++++a++++++l+++lvGd ++i+pll+k ++e++s+l+i+ a++vi+++++p++a+r +++ssm+valelvkeg+a+a
    CTQ27479.1  26 TLALDVMGGDFGPSVTVPAALQALNSNSQLTLLLVGDPDAITPLLAKaDFEQRSRLQIIPAQSVIASDARPAQAIRSSRGSSMRVALELVKEGRAQA 122
                   79*********************************************9************************************************* PP

                   EEE-S-HHHHHHHHHHCT-B-TT-SS-EEE-EE--TT.S-EEEE-SSS-TT--HHHHHHHHHHHHHHHHHTS--SS-EEEEEESSSSTT-SSHHHHH CS
  FA_synthesis  98 lvsaGntgAlmalallrlgrikgierpalavllPtvs.gktvlLDvganvdckpkeLvqfalmGsvyaesvlgvdsprvglLniGeeevkgndlvkq 193
                   +vsaGntgAlm+la+l l+ i+gierpal+++lP+++ gktv+LD+ganvdc++++Lvqfa+mG v+ae+v+g+ +prv+lLniGeee kg  ++++
    CTQ27479.1 123 CVSAGNTGALMGLAKLLLKPIEGIERPALVTVLPHQQkGKTVVLDLGANVDCDSTMLVQFAVMGAVLAEEVVGIANPRVALLNIGEEEMKGLGSIRD 219
                   *************************************67********************************************************** PP

                   HHHHHHT-TTSEEEEEEEGGGCCCTS-SEEE--HHHHHHHHHHHHHHHHHHHHHHHHHHTTT---------...-HHCHHHHHHHH-GGGC--EEEE CS
  FA_synthesis 194 tfellkaiesieflGnvegrdildgkvdvivcdgftgNvilktaegvakavksllkeelkkslasklgall...lskalkrlkkkldykeyggavll 287
                   ++++lk+ +s++++G++e++++l+gk+dv+vcdgftgNv+lkt+egv+++++sllk++ + +++s++  ll   l+k+l r++++l++++y+ga+ll
    CTQ27479.1 220 AAAVLKTLPSLNYIGYLEANELLTGKTDVLVCDGFTGNVTLKTMEGVVRMFLSLLKSQGEGKKRSWWLLLLkrwLQKSLARRFSHLNPDQYNGACLL 316
                   ************************************************************************************************* PP

                   TBSS-EEE--TT--HHHHHHHHHHHHHHHHTTHHHH CS
  FA_synthesis 288 GlkgvvikshgkankkaikaaIrqakelvetqvisr 323
                   Gl+g+vikshg+an++a+ +aI+qa+++v++q+ +r
    CTQ27479.1 317 GLRGSVIKSHGAANQRAFSVAIEQAVQAVQRQIPQR 352
                   ********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3075.54
//
Query:       CTQ27480.1  [L=317]
Description: 3-oxoacyl-(acyl-carrier-protein) synthase III [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-36  124.1   0.4    5.8e-36  122.6   0.1    2.0  2  ACP_syn_III_C    3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    3.8e-29  100.4   1.7    7.5e-29   99.4   1.7    1.5  1  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
    4.7e-06   26.2   1.7    8.3e-06   25.4   1.7    1.4  1  Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal 
      7e-06   25.6   2.1      7e-06   25.6   2.1    1.7  3  Thiolase_N       Thiolase, N-terminal domain
     0.0022   17.9   0.3     0.0035   17.2   0.3    1.2  1  HMG_CoA_synt_N   Hydroxymethylglutaryl-coenzyme A synthase N 
     0.0027   17.3  11.6      0.012   15.2   6.1    2.9  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
       0.14   11.5   0.0       0.22   10.8   0.0    1.4  1  FAE1_CUT1_RppA   FAE1/Type III polyketide synthase-like prote


Domain annotation for each model (and alignments):
>> ACP_syn_III_C  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.6   6.6e+03      68      68 ..     148     148 ..     112     167 .. 0.55
   2 !  122.6   0.1   2.3e-39   5.8e-36       1      89 [.     228     316 ..     228     317 .] 0.98

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.6
                    T CS
  ACP_syn_III_C  68 p 68 
                    p
     CTQ27480.1 148 P 148
                    3 PP

  == domain 2  score: 122.6 bits;  conditional E-value: 2.3e-39
                    HHHTT--GGG-SEEEE-SSSHHHHHHHHHHHT--GGGB--THHHH-B-GGGHHHHHHHHHHHTTSS-TT-EEEEEEEETTTEEEEEEEE CS
  ACP_syn_III_C   1 LekagltpedidalvphqanlriidavakklglpeekvvvnldeyGntsaasiplaLdeaveegklkpgdlvllvgfGaGltwgaallr 89 
                    L++++l+ + +d+lvphqanlrii a+akklg++++ vvv+ld++Gntsaas+p aLdeav++g++++g+l+ll +fG+G+twg+al+r
     CTQ27480.1 228 LAANNLERSALDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEAVRDGRIQRGQLILLEAFGGGFTWGSALVR 316
                    789************************************************************************************98 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   1.7   2.9e-32   7.5e-29       1      80 []     106     183 ..     106     183 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 2.9e-32
                  EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGCS-TTTHHHHTTB-EEEEEEEEEEESSSSCEEEEEEEEE-G CS
  ACP_syn_III   1 fDlnaaCsgfvyalsvAdaliesgaakrvLvigaetlskilDwkdrstavlfGDGAgAvvleaseeegarildselgsdg 80 
                  fD+ aaC+gf+yalsvAd+++++ga+ ++Lv+ga++l++ +D++dr t+++fGDGAgAvvl+asee+g  i++++l++dg
   CTQ27480.1 106 FDVAAACAGFTYALSVADQYVKNGAVDYALVVGADVLARTCDPADRGTIIIFGDGAGAVVLGASEEPG--IISTHLHADG 183
                  9****************************************************************9**..********98 PP

>> Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   1.7   3.2e-09   8.3e-06      89     223 ..      41     168 ..      18     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 3.2e-09
  Chal_sti_synt_N  89 darleivnaevlklgkeaalkalkewGrPkskithlvfvssseve.lPGadlklakklGlrpsvkrvmlyflGcygGatvlrlakdiaennkGa 181
                      + r + + + v  +g eaa++al   G  +++i  ++  ++s+ + +P +  ++ + lG++            c g + +l +a     n +  
       CTQ27480.1  41 ERRIAAAHETVATMGFEAAKQALAMAGVSAEQIGLIIVATTSGTHaFPSSACQIQSMLGVKGCPA--FDVAAACAGFTYALSVADQYVKNGAVD 132
                      5677888999******************************9998548************987543..345678999999*************** PP

  Chal_sti_synt_N 182 rvlvvaseitvlgfrgPskdrlddlvGaalfGdGaaaviiGa 223
                        lvv +++ + +  +       d     +fGdGa av++Ga
       CTQ27480.1 133 YALVVGADVLARTCDPA------DRGTIIIFGDGAGAVVLGA 168
                      *******9987665433......3334569***********8 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   2.1   2.8e-09     7e-06       8     116 ..      36     143 ..      33     154 .. 0.93
   2 ?   -3.0   0.0       1.5   3.8e+03     248     257 ..     158     167 ..     151     170 .. 0.82
   3 ?   -2.8   0.0       1.3   3.2e+03      62      93 ..     250     281 ..     219     293 .. 0.67

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.8e-09
                 EE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSE CS
  Thiolase_N   8 rtpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadv 106
                 rt i + + + +  ++  ++ ea+k++l+ agv++e++  +iv++   + +    a q++ ++g+ +  pa  v  +c+    a+  a q ++ g++d 
  CTQ27480.1  36 RTGIRERRIAAAHETVATMGFEAAKQALAMAGVSAEQIGLIIVATTSGTHAFPSSACQIQSMLGV-KGCPAFDVAAACAGFTYALSVADQYVKNGAVDY 133
                 788888888888999999****************************99999999***********.********************************* PP

                 EEEEEEEEST CS
  Thiolase_N 107 vvagGvEsms 116
                 ++++G+  + 
  CTQ27480.1 134 ALVVGADVLA 143
                 *****97665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.5
                 EEEEEEEEEE CS
  Thiolase_N 248 sDGaaavllm 257
                  DGa+av+l 
  CTQ27480.1 158 GDGAGAVVLG 167
                 59*****985 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.3
                 HHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHH CS
  Thiolase_N  62 iarqaalkagipeevpavtvnkvcsSglkava 93 
                 i  + a k+g++ + ++vt+++    ++++v 
  CTQ27480.1 250 IISATAKKLGMSMDNVVVTLDRHGNTSAASVP 281
                 44556667777777777777777776666665 PP

>> HMG_CoA_synt_N  Hydroxymethylglutaryl-coenzyme A synthase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   1.4e-06    0.0035       7     159 ..       5     153 ..       3     170 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.4e-06
  HMG_CoA_synt_N   7 ilaleiylpaqyvdqaelekfdgveagkytiglgqtrmgfvsdredinslsltvvqkllertkldydaigrlevgtetiidksksvksvlmqlfe 101
                     i++   ylp q+  +a+lek+ + ++       g  +  +++ +e + ++ +   ++ l    ++ ++ig + v t +    +++  s   q+  
      CTQ27480.1   5 IIGTGSYLPEQVRTNADLEKMVETSDEWIVTRTGIRERRIAAAHETVATMGFEAAKQALAMAGVSAEQIGLIIVATTSG---THAFPSSACQIQS 96 
                     566778***************99999888888999999999*********************************99764...5666666777777 PP

  HMG_CoA_synt_N 102 esgntdiegidtlnacyggtaalfnavnwiessawdgryalvvagdiaiyd.sgnarpt 159
                       g       d   ac g t al  a ++++  a d  yalvv  d+   + + + r t
      CTQ27480.1  97 MLGVKGCPAFDVAAACAGFTYALSVADQYVKNGAVD--YALVVGADVLARTcDPADRGT 153
                     777788999***********************9998..9*****998544313344444 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   6.1   4.7e-06     0.012     102     205 ..      36     142 ..      25     145 .. 0.71
   2 ?    4.0   0.2     0.013        33     227     248 ..     144     167 ..     142     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.7e-06
                    HHTS-HHTCTTGG.EEEEEEESSTHHHHHHHHHHHTT....GGGSCTTHHHH.HSTTHHHHHHHHHHT--S.SEEEEESGGGHHHHHHHHHHHHHH CS
  ketoacyl-synt 102 dagltpeeldgsr.vgvfiGvgagdyaalaaldedgs....evkaspkavga.vlanviagrisyalglrG.psvtvdtACsSslvavhaavqslr 190
                    + g+ ++++     +  ++G +a+++a    l ++g+    +  + + +++   +    a++i + lg++G p++ v +AC+    a+ +a q ++
     CTQ27480.1  36 RTGIRERRIAAAHeTVATMGFEAAKQA----LAMAGVsaeqIGLIIVATTSGtHAFPSSACQIQSMLGVKGcPAFDVAAACAGFTYALSVADQYVK 127
                    678888888544448888888888663....33333322223444442222223334456677888*****899********99************ PP

                    TTS-SEEEEEEEE-- CS
  ketoacyl-synt 191 sgeadvalaGGvell 205
                    +g +d+al+ G+++l
     CTQ27480.1 128 NGAVDYALVVGADVL 142
                    ************986 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.013
                    GTTBTTB-SB..-BB-EEEEEEEE CS
  ketoacyl-synt 227 kafdpkadGf..vlGEGvGavvLk 248
                    +++dp++ G+  ++G+G+GavvL 
     CTQ27480.1 144 RTCDPADRGTiiIFGDGAGAVVLG 167
                    67899999972258********96 PP

>> FAE1_CUT1_RppA  FAE1/Type III polyketide synthase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.6e-05      0.22      73     177 ..      41     144 ..      14     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.6e-05
  FAE1_CUT1_RppA  73 kktlaeareEaeevlfgavdellaktkvspkdidilvvnc.slfsptPslsamvvnryklredvksynLsgmGCsAglisidlaknllqvhkntl 166
                     ++++a+a+e + ++ f+a ++ la ++vs+++i++++v++ s   + Ps +  +    +++    ++++++  C+  + ++ +a + ++     +
      CTQ27480.1  41 ERRIAAAHETVATMGFEAAKQALAMAGVSAEQIGLIIVATtSGTHAFPSSACQIQSMLGVK-GCPAFDVAA-ACAGFTYALSVADQYVKNGAVDY 133
                     466778888888888*******************998875266778899888888777775.689999988.8999999999****999999999 PP

  FAE1_CUT1_RppA 167 alvvstEnitl 177
                     alvv  + ++ 
      CTQ27480.1 134 ALVVGADVLAR 144
                     99999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2373.04
//
Query:       CTQ27481.1  [L=309]
Description: malonyl-CoA-(acyl-carrier-protein) transacylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-39  135.5   1.5    3.3e-39  135.2   1.5    1.0  1  Acyl_transf_1  Acyl transferase domain


Domain annotation for each model (and alignments):
>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   1.5   1.9e-43   3.3e-39       2     272 ..       6     282 ..       5     304 .. 0.87

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 1.9e-43
                    EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT.-TTSEEEE-TTHHHH CS
  Acyl_transf_1   2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiqfvqpaLaavqialaellkskG.vrpaavvGHSlGElA 96 
                    fvf+GqGsQ  GM +e+ +  ++  ++  +a        g+ +  + ++ p  +l+++ ++qpaL a  +al+ +++ +G  +pa+++GHSlGE++
     CTQ27481.1   6 FVFPGQGSQAVGMLAEMAAAWPVIEETFGEASA----ALGYDLWALTQQGPAEELNKTWQTQPALLAASVALYRVWQQQGgKAPALLAGHSLGEYS 97 
                    9************87777776666666666554....46889999*******************************99999*************** PP

                    HHHHCCSSSHHHHHHHHHHHHHHHHHHT..S-EECCEECS......HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC..CCEE CS
  Acyl_transf_1  97 aavvagalsseeallavvlrsrlmmqla..gpgdmaavel.....aeeeeklr.cqddvvgavansprrvvisgsqealrelvervskeg.vgalv 183
                    a+v ag +  ++a++ v lr++ m+++   g g+m a+        ++ ++       v++  +nsp++vvi+g +ea+++  + ++++g  +al 
     CTQ27481.1  98 ALVCAGVIGFADAVRLVELRGKFMQEAVpeGTGAMSAIIGlddaaIAKACEESaEGQVVSPVNYNSPGQVVIAGHKEAVERAGAACKAAGaKRALP 193
                    ***************************9556678877543466553334444424455677889**************************889999 PP

                    ECCCEECTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCH CS
  Acyl_transf_1 184 envnvavhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslll 272
                      v+v +h + ++++a++la +l++i+ + p+++    + ++ ++++    +  v+ l spv+  ++v  +a+ +     e+ p  +l+
     CTQ27481.1 194 LPVSVPSHCALMKPAAEKLAVELQKITFNAPTIPVVNNVDVKCETAPDAIRDALVRQLYSPVQWTKTVEFMAAEGVSHLYEVGPGKVLT 282
                    9******************************************************************9999888888778887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2274.42
//
Query:       CTQ27482.1  [L=244]
Description: 3-oxoacyl-(acyl-carrier-protein) reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-68  231.4   6.8    1.2e-68  231.2   6.8    1.0  1  adh_short_C2    Enoyl-(Acyl carrier protein) reductase
    2.7e-61  206.4   4.0    3.2e-61  206.2   4.0    1.1  1  adh_short       short chain dehydrogenase
    5.8e-20   72.0   1.4    8.5e-20   71.4   1.4    1.2  1  KR              KR domain
    1.2e-06   28.5   2.0    1.6e-06   28.2   2.0    1.2  1  NAD_binding_10  NAD(P)H-binding
    5.3e-05   22.8   0.2    9.1e-05   22.0   0.2    1.5  1  Epimerase       NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.062   13.3   1.8       0.11   12.4   0.1    2.1  2  ADH_zinc_N      Zinc-binding dehydrogenase
       0.13   11.6   0.0       0.22   10.9   0.0    1.3  1  DUF1776         Fungal family of unknown function (DUF1776)
        1.1    8.8   8.1        5.2    6.6   0.7    2.3  2  LDcluster4      SLOG cluster4 family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.2   6.8   5.3e-72   1.2e-68       1     233 [.      12     241 ..      12     242 .. 0.96

  Alignments for each domain:
  == domain 1  score: 231.2 bits;  conditional E-value: 5.3e-72
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga +gIGraiA++l ++Ga+v+ t  +e++   ++++ + lga+   l ++Vtd++++e++ e+v+++fg++Dilvnnagi+++  + ++ ++++e+
    CTQ27482.1  12 GASRGIGRAIAETLVARGAKVIGTATSESG---AQAISDYLGANGkgLMLNVTDPASIESVLENVRAEFGEVDILVNNAGITRD--NLLMRMKDDEW 103
                   999***************************...78888888877336*************************************..*********** PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelle 190
                   ++++++nl s+f+l+ka+++ +mk++ g+i+++ sv ++++ ++++ y+aaKa+l++++++lA+e++++gi+vN+v+pg+i+T+++++++  de ++
    CTQ27482.1 104 NDIIETNLSSVFRLSKAVMRaMMKKRhGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALT--DEQRA 198
                   ********************8888778**************************************************************8..88999 PP

                   HHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 191 elearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                      a  p grlgtp+e+a+a++fLasdeasyitG+tl+v+gG+
    CTQ27482.1 199 GTLAAVPAGRLGTPNEIASAVAFLASDEASYITGETLHVNGGM 241
                   999***************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.2   4.0   1.4e-64   3.2e-61       1     194 [.       6     196 ..       6     197 .. 0.98

  Alignments for each domain:
  == domain 1  score: 206.2 bits;  conditional E-value: 1.4e-64
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 k++lvtGas+GIGraia++l+++Gakv+ ++ se+ ++++ + l+++      + ++vtd +++e ++e++++++g++d+LvnNAGit+++   +++++
  CTQ27482.1   6 KIALVTGASRGIGRAIAETLVARGAKVIGTATSESGAQAISDYLGAN---GKGLMLNVTDPASIESVLENVRAEFGEVDILVNNAGITRDNLLMRMKDD 101
                 79***********************************9999999998...68999******************************************** PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelreke 194
                 ew+++ie+Nl +vf l++av++am+k++ GrI++++Sv+g +++ag+a Y+A+Ka+++g+++sla+e+a++gi+vn+vaPG+++Tdm+++l++++
  CTQ27482.1 102 EWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALTDEQ 196
                 ****************************************************************************************9998775 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   1.4   3.8e-23   8.5e-20       4     171 ..       9     177 ..       7     186 .. 0.82

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 3.8e-23
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 l+tG+  g+G+++a++l+++ga+ +   + +    + ++    +++++ ga+ + + + v+d++++e++le+++ae++++   ++ Ag++rd+ll++m+
  CTQ27482.1   9 LVTGASRGIGRAIAETLVARGAKVIGTATSE----SGAQ----AISDYlGANGKGLMLNVTDPASIESVLENVRAEFGEVDILVNNAGITRDNLLMRMK 99 
                 9*********************988766555....2333....333333888888999***************************************** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHH....HHHHHHHHHHHHHHTEE CS
          KR 102 aedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNa....flDalaeyrrsqglpav 171
                 +++++ +++  ++ +  L +++ +    ++   ++++ S+ g++g+agqanYaaa a    f  +la++ +s+g  + 
  CTQ27482.1 100 DDEWNDIIETNLSSVFRLSKAVMRammkKRHGRIITIGSVVGTMGNAGQANYAAAKAgligFSKSLAREVASRGITVN 177
                 **************9999988776566588899**********************98222244444444444444444 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   2.0     7e-10   1.6e-06       1     151 [.      12     189 ..      12     225 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 7e-10
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT..TTCEEEE--TT-CCHHHHHHT.......T-SEEEES---TCC.......HHHH.. CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleae..eglevvegdvtdvedlaealk.......gadaVvsalggggk.......deeg.. 77 
                     GA+ ++Gr++++ l+arg  +v   + +++ ++++++   ++ + + ++vtd+++++++l+        +d+ v ++g +++       d     
      CTQ27482.1  12 GASRGIGRAIAETLVARG-AKVIGTATSESGAQAISDYlgANGKGLMLNVTDPASIESVLEnvraefgEVDILVNNAGITRDnllmrmkD--Dew 103
                     9****************5.99999999998888777543366678899999999999999966666767788777776666557665542..155 PP

                     ..............HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHH.HHHHHHHHHHSSSEEEEEEE-CEE-ST- CS
  NAD_binding_10  78 ..............aknivdaakeagvkRfvlvsaigvgdevpgefgewnkellkaylaa.kraaeellrasgldwTivrpggLtdept 151
                                    k++++a+ ++   R+++++++  +   +g+ g+ n+ + ka l+   +  ++++ ++g++  +v pg+++ + t
      CTQ27482.1 104 ndiietnlssvfrlSKAVMRAMMKKRHGRIITIGSVVGT---MGNAGQANYAAAKAGLIGfSKSLAREVASRGITVNVVAPGFIETDMT 189
                     777888899999*9*******************997444...688999999999999987355678899*************9765543 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.2   4.1e-08   9.1e-05       1     115 [.       8     138 ..       8     177 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 4.1e-08
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHHHHHH.....T-SEEEE--S---HHH..HH..HSHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl....elveldltdrsalerlfkee.....qpdavihlAavggvaa..ss..edpad 86 
                 +lVtGa+  iG+a+++ l ++g +vig +  +s+ + a  + l    +   l++td++++e +++++     ++d+ ++ A++   +   ++  ++ +d
  CTQ27482.1   8 ALVTGASRGIGRAIAETLVARGAKVIGTATSESGAQ-AISDYLgangKGLMLNVTDPASIESVLENVraefgEVDILVNNAGITRDNLlmRMkdDEWND 105
                 59**************************99955444.444445899*999*******987777765511014567777777744332211221134468 PP

                 HHHHHTHHHHHHHHHHHHHTCT....EEEEEEE CS
   Epimerase  87 fieknlqgtlnlleaarkagvk....rllflsS 115
                 +ie+nl  + +l +a+ +a +k    r++ ++S
  CTQ27482.1 106 IIETNLSSVFRLSKAVMRAMMKkrhgRIITIGS 138
                 888888888888888777755545557777777 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1     5e-05      0.11       1      67 [.      16      88 ..      16     101 .. 0.77
   2 ?   -0.6   0.1      0.54   1.2e+03      80      96 ..     128     146 ..     118     178 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5e-05
                HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.T.....T.ESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSC CS
  ADH_zinc_N  1 gvGlaavqlAkalGaeviavdsseeklelakk.l.....G.adevinykea.dlverikeltggegvdvvfecvG 67
                g+G a  + + a Ga+vi+++ se+ ++   + l     G +  v ++ +  ++ e +++ +g   vd+ ++ +G
  CTQ27482.1 16 GIGRAIAETLVARGAKVIGTATSESGAQAISDyLgangkGlMLNVTDPASIeSVLENVRAEFG--EVDILVNNAG 88
                899999*******************99888884455544444445555555578888888883..8999888888 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.54
                 EEEEEEEECSC..TSSEEE CS
  ADH_zinc_N  80 kpgGrlvvvGg..gkgeee 96 
                 k++Gr+ ++G   g++++ 
  CTQ27482.1 128 KRHGRIITIGSvvGTMGNA 146
                 5678888888876555543 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.8e-05      0.22     111     200 ..      98     184 ..      94     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.8e-05
     DUF1776 111 iplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnl 200
                 ++ ++w++ ++++l+s + +++a +  + +  k++ +ii    s++  + ++ +a  a     l  + ++L+re+++ +i v  +  G +
  CTQ27482.1  98 MKDDEWNDIIETNLSSVFRLSKAVMRAMMK--KRHGRII-TIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFI 184
                 67799*************999999999987..4555555.557999**********************************9988877766 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.7    0.0023       5.2      33      72 ..       6      45 ..       4      65 .. 0.86
   2 ?    5.9   1.4     0.004         9      31     117 ..     129     219 ..     111     232 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0023
  LDcluster4 33 gavlltGgrtGvmeaaskGakeagGltvGilpassekehs 72
                ++ l+tG+ +G+ +a ++    +g  ++G   ++s  ++ 
  CTQ27482.1  6 KIALVTGASRGIGRAIAETLVARGAKVIGTATSESGAQAI 45
                578**************************98886665554 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.004
  LDcluster4  31 kegavlltGgrtGvmeaaskG..akeagGltvGilpassekehsnkyvdiiiyT....GlglagRnlilvlssdvviai.ggrsGTlsEialal 117
                 ++g ++  G   G+m  a ++  a   +   +G++ +  ++ +s   +++ ++      ++++ R l+  + +  + a+  gr GT +Eia a+
  CTQ27482.1 129 RHGRIITIGSVVGTMGNAGQAnyAAA-KAGLIGFSKSLAREVASRG-ITVNVVApgfiETDMT-RALTDEQRAGTLAAVpAGRLGTPNEIASAV 219
                 46677788888999999999974444.45569**999666555555.5555555433335544.8888665555555442799******99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1865.73
//
Query:       CTQ27483.1  [L=78]
Description: acyl carrier protein (ACP) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-17   61.5   0.2    8.3e-17   61.3   0.2    1.0  1  PP-binding     Phosphopantetheine attachment site
    2.6e-06   27.6   0.9    2.9e-06   27.4   0.9    1.2  1  PP-binding_2   Acyl-carrier
  ------ inclusion threshold ------
      0.028   14.5   0.0      0.032   14.3   0.0    1.1  1  DUF1896        Domain of unknown function (DUF1896)
      0.029   14.9   0.4      0.032   14.7   0.4    1.1  1  DUF1493        Protein of unknown function (DUF1493)
      0.033   14.3   0.0      0.044   13.9   0.0    1.4  1  Ribosomal_L50  Ribosomal subunit 39S
      0.065   13.2   0.0      0.083   12.9   0.0    1.3  1  HLH            Helix-loop-helix DNA-binding domain


Domain annotation for each model (and alignments):
>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.2   2.8e-20   8.3e-17       1      67 []       6      73 ..       6      73 .. 0.96

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 2.8e-20
  PP-binding  1 eklrelvaevlgvpleeidpdtdlf.dlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67
                e+++ ++ e+lgv +ee++ ++++  dlG DSl++vel++aleeef++eip+++    +t+++ ++y+
  CTQ27483.1  6 ERVKKIIGEQLGVKQEEVTNNASFVeDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYI 73
                5899*********************77****************************88******99997 PP

>> PP-binding_2  Acyl-carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.9   9.6e-10   2.9e-06      42      85 ..      31      74 ..       4      78 .] 0.84

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 9.6e-10
  PP-binding_2 42 edrlwdgldtvefvedveelfdvivsdevadnfetlqeiadlvv 85
                  ed   d+ldtve+v+ +ee fd  ++de a+++ t+q   d++ 
    CTQ27483.1 31 EDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYIN 74
                  455579********************************999985 PP

>> DUF1896  Domain of unknown function (DUF1896)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.1e-05     0.032      56      97 ..      22      65 ..       9      71 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.1e-05
                HHHHHHHHHTT-S--HHHHHHHH..HHHHSTTTS-TTHHHHHHH CS
     DUF1896 56 eelanevLyqgLhfSkydtlvev..leneFekeipeekreelal 97
                e + n+  +++L     dt+  v  le+eF++eip+e++e++++
  CTQ27483.1 22 EVTNNASFVEDLGADSLDTVELVmaLEEEFDTEIPDEEAEKITT 65
                455567788999999999998774478*************9975 PP

>> DUF1493  Protein of unknown function (DUF1493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.4   1.1e-05     0.032       1      59 [.       1      54 [.       1      68 [. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
     DUF1493  1 ldsiekevlelireelgtklfkgkeveltldtdldedlkldeddaedllekffkrfnVd 59
                +++ie++v + i e+lg+k     + e+t + +  edl++d  d+ +l+ + +++f+ +
  CTQ27483.1  1 MSTIEERVKKIIGEQLGVK-----QEEVTNNASFVEDLGADSLDTVELVMALEEEFDTE 54
                7899999*99**9999998.....88*************************99999876 PP

>> Ribosomal_L50  Ribosomal subunit 39S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.5e-05     0.044      43      74 ..      42      73 ..       2      77 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
  Ribosomal_L50 43 aflkrlqqllgheipDykltklhtvkdlveyl 74
                   +++  l ++  +eipD +  k++tv+++++y+
     CTQ27483.1 42 ELVMALEEEFDTEIPDEEAEKITTVQAAIDYI 73
                   6788899999*********************9 PP

>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.8e-05     0.083      32      53 .]      56      77 ..      35      77 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.8e-05
                TSS-STHHHHHHHHHHHHHHHH CS
         HLH 32 pskKlsKaeiLekAveYIkhLq 53
                p++  +K+++++ A++YI+  q
  CTQ27483.1 56 PDEEAEKITTVQAAIDYINGHQ 77
                567789************9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 685.14
//
Query:       CTQ27484.1  [L=413]
Description: 3-oxoacyl-(acyl-carrier-protein) synthase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-63  214.1   1.7    2.4e-63  214.1   1.7    1.7  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    3.6e-40  136.6   0.7    6.9e-40  135.7   0.7    1.5  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    1.7e-05   24.3   2.2    2.4e-05   23.9   0.8    1.9  2  Thiolase_N       Thiolase, N-terminal domain
    0.00019   21.2   8.6       0.28   11.1   0.0    3.9  3  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
  ------ inclusion threshold ------
      0.073   13.5   0.1        0.3   11.6   0.1    2.1  2  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.1   1.7   6.7e-67   2.4e-63       2     253 .]       4     247 ..       3     247 .. 0.95
   2 ?   -1.4   0.1       0.4   1.4e+03      95     110 ..     283     298 ..     279     349 .. 0.64

  Alignments for each domain:
  == domain 1  score: 214.1 bits;  conditional E-value: 6.7e-67
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfldvddfdpeffgispreaeamdpqqrllleaaw 97 
                    ++v+++G+g++ P gn+ve++w++Ll+g+++is ++  ++d++++   ++++ag +k+        +++d+ + ++++r   +md ++++ ++a  
     CTQ27484.1   4 RRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLID--HFDTSAY---ATKFAGLVKD--------FNCDDIISRKEQR---KMDAFIQYGIVAGV 83 
                    89*******************************999..8******...8********9........9************...************** PP

                    HHHHHHTS-HHTCTTGGEEEEEEESSTHH....HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHH.HHHHHHHHHH CS
  ketoacyl-synt  98 ealedagltpeeldgsrvgvfiGvgagdy....aalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSs.lvavhaavqs 188
                    +a++d+gl+ +e + +r+g  iG+g+g      +++++l + g+++k+sp++v++++ n++ag++++ +glrGps+++ tAC+S+ + +++aa + 
     CTQ27484.1  84 QAMQDSGLEVTEENATRIGAAIGSGIGGLglieENHSSLVN-GGPRKISPFFVPSTIVNMVAGHLTIMFGLRGPSISIATACTSGvHNIGQAA-RI 177
                    ***************************55455456666664.559****************************************99999999.** PP

                    HHTTS-SEEEEEEEE---SHHHHHHHHHTT.BB-TT.SGGGTTBTTB...-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 189 lrsgeadvalaGGvellltpeavagfsaag.llspd.grckafdpka...dGfvlGEGvGavvLkrleda 253
                    + +g+ad+++aGG+e + tp +v+gf aa+ l++++ +++ a++p++   dGfvlG+G+G+vvL+++e+a
     CTQ27484.1 178 IAYGDADAMVAGGAEKASTPLGVGGFGAARaLSTRNdNPQAASRPWDkdrDGFVLGDGAGMVVLEEYEHA 247
                    ******************************888888999***************************9987 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.4
                    HHHHHHHHHTS-HHTC CS
  ketoacyl-synt  95 aawealedagltpeel 110
                    a+ +a++dag++p ++
     CTQ27484.1 283 AMVNAIRDAGIEPGQI 298
                    6778999999999776 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   0.7   1.9e-43   6.9e-40       1     117 [.     255     369 ..     255     370 .. 0.98

  Alignments for each domain:
  == domain 1  score: 135.7 bits;  conditional E-value: 1.9e-43
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      ya+i+g++++sd++h++ + ++g+++a a+ +a+++ag++p +++yv+ahgt+tp+gD++E++a+k+vfg+ a  +++ v+S+Ks++GHl++Aa
       CTQ27484.1 255 YAEIVGFGMSSDAYHMTSPPEDGAGAALAMVNAIRDAGIEPGQIGYVNAHGTSTPAGDKAEAQAVKSVFGDAA--SRVLVSSTKSMTGHLLGAA 346
                      8**********************************************************************99..67***************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      G++e i ++lal+++++ppt+nl
       CTQ27484.1 347 GAVESIYSILALRDQAVPPTINL 369
                      **********************8 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.8   6.6e-09   2.4e-05      66     116 ..     147     195 ..     138     202 .. 0.86
   2 ?   -1.9   0.0      0.47   1.7e+03      29      49 ..     282     302 ..     275     335 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 6.6e-09
                 HHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEEST CS
  Thiolase_N  66 aalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsms 116
                 ++++ g+    p++ +  +c Sg++ + +aa+ ia g+ad++vagG+E+ s
  CTQ27484.1 147 LTIMFGL--RGPSISIATACTSGVHNIGQAARIIAYGDADAMVAGGAEKAS 195
                 5555555..678999*********************************987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.47
                 HHHHHHHHHHTS-GGGCCEEE CS
  Thiolase_N  29 ealkallekagvdpeevdevi 49 
                  a+ +++ +ag++p ++ +v 
  CTQ27484.1 282 LAMVNAIRDAGIEPGQIGYVN 302
                 567778888888888888774 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.2   0.00073       2.6       3      39 ..     160     196 ..     158     199 .. 0.92
   2 !   11.1   0.0   7.7e-05      0.28      43      67 ..     223     247 ..     215     267 .. 0.74
   3 ?    4.0   1.7     0.012        44      46      68 ..     317     339 ..     276     348 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00073
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlsk 39 
                  + +aC++ v+ + +A+++i+ g a  ++  gae+ s 
   CTQ27484.1 160 IATACTSGVHNIGQAARIIAYGDADAMVAGGAEKAST 196
                  679*********************9999999999885 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7.7e-05
                  TTTHHHHTTB-EEEEEEEEEEESSS CS
  ACP_syn_III  43 wkdrstavlfGDGAgAvvleaseee 67 
                  w++ +  +++GDGAg vvle+ e+ 
   CTQ27484.1 223 WDKDRDGFVLGDGAGMVVLEEYEHA 247
                  445566789***********98433 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.012
                  HHHHTTB-EEEEEEEEEEESSSS CS
  ACP_syn_III  46 rstavlfGDGAgAvvleaseeeg 68 
                  ++   +fGD+A  v+++ ++   
   CTQ27484.1 317 QAVKSVFGDAASRVLVSSTKSMT 339
                  445559**********9995433 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.5     9e+03      38      52 ..     236     250 ..     229     254 .. 0.75
   2 ?   11.6   0.1   8.3e-05       0.3      28      45 ..     395     412 ..     380     413 .] 0.74

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.5
  KAsynt_C_assoc  38 nvHviLksnkkekrk 52 
                      + v+L++++++k++
      CTQ27484.1 236 AGMVVLEEYEHAKKR 250
                     567999999998876 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 8.3e-05
  KAsynt_C_assoc  28 gvNsfGfGGsnvHviLks 45 
                       NsfGfGG+n+ +i k+
      CTQ27484.1 395 LCNSFGFGGTNGSLIFKK 412
                     56**********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3470.05
//
Query:       CTQ27485.1  [L=269]
Description: 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-47  162.6   0.0    1.4e-47  162.4   0.0    1.0  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.4   0.0   7.8e-52   1.4e-47       1     223 []      24     247 ..      24     247 .. 0.93

  Alignments for each domain:
  == domain 1  score: 162.4 bits;  conditional E-value: 7.8e-52
  Aminotran_4   1 glfEtmrvyngeiffldeHleRLrksaellglelpfdeeelrkileelleannsengrlrllvsrgggglg...aatsepsvavyvsalppgpeseke 95 
                  g+f+t r+ +g++ +ld+Hl+RL+ ++e l+++++ d+ +l+++++ l++ +  ++  l+++++rg gg+g   a +++p+ ++++s++p + ++++e
   CTQ27485.1  24 GCFTTARIQQGQVALLDAHLQRLQTTCEKLHIPFN-DWLTLSEEMQRLARPHAQGV--LKVTLTRGVGGRGysaAGCVSPTRILSFSPYPAHYARWRE 118
                  79****************************44444.55566666666665555555..**************************************** PP

  Aminotran_4  96 ..lplvtssdvrrdapsplpgaKtlnyldnvlarreakergadevllvdedgnvtEgstsNvfivkggelitPplssgiLpGitrrallelakalgle 191
                    ++l++s  v    +s+l+g+K+ln+l++vl r + ++++ade+l++d+dg +tE++ +N+f+++g  ++tP+l+  +++Gi+r+++++++++  + 
   CTQ27485.1 119 egITLTQSP-VPLGRNSWLAGLKHLNRLEQVLIRSHLEQTDADEALVLDSDGWLTECCAANLFWRQGRDVFTPRLDYAGVNGIMRQRCIAQLAPSTFR 215
                  999999999.**************************************************************************************** PP

  Aminotran_4 192 veereitlkdleeadeafltntlrgvlpvrsi 223
                  v e   +++ l+eade++++n+l+ ++pvr++
   CTQ27485.1 216 VVEVTARPETLREADEVLICNALMPLVPVRRW 247
                  *****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.33
# Mc/sec: 2446.87
//
Query:       CTQ27486.1  [L=340]
Description: putative conserved membrane associated protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-80  269.0   0.0    5.6e-80  268.8   0.0    1.0  1  YceG      YceG-like family


Domain annotation for each model (and alignments):
>> YceG  YceG-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.8   0.0   3.1e-84   5.6e-80       2     274 ..      43     328 ..      42     329 .. 0.89

  Alignments for each domain:
  == domain 1  score: 268.8 bits;  conditional E-value: 3.1e-84
                 EE-TT--HHHHHHHHHHTTSSS-HHHHHHHHHHHT.------EEEEE-TT--HHHHHHHHHCTSB.S..SEEE-TT--HHHHHHHHHHSTTS-HHHHHS CS
        YceG   2 tipegsslseiaekLeeagviksaeafkllaklkk.kkalkaGeyelkkgmsleeilekLtkgkq.ekrkvtipegltleqiaeklekkaelskeellk 98 
                 t ++g++  +++++L++++vi+ +++f++l++++   +++kaG+y+++++m+++e+l+ L++gk+ +   + + eg+++++++++l+ +a + k++l++
  CTQ27486.1  43 TLEAGTGRLALGQDLYREKVINRPRVFQWLLRVEPeLSHFKAGTYRFTPQMTVREMLQLLASGKEaQFP-LRFVEGMRVSDYLRQLR-DAPYVKHTLED 139
                 67888899999**********************886778************************886666.*****************.55666666664 PP

                 -GGGG-TT-......STTTT-S-SCEE--SSS--HHHHHHHHHHHHHHHT.HHH......HCT--HHHHHHHHHHHHHH--SSS-HHHHHHHHHHHHHT CS
        YceG  99 askeeklkv......ekleGylfPdtYefkkgtsaeeilkrmlaefekvl.kraek..akasgltpyevltlASivekEaakaeerpkvAsVflnRLkk 188
                 +s+++  k+      + +eG++ Pdt+ ++ +ts+ +ilkr+++++ +++ k +e   +++++++ +++lt+ASi+ekE+a+aeer +vAsV++nRL+ 
  CTQ27486.1 140 DSYATVAKAlglehaDWVEGWFWPDTWMYTANTSDIAILKRAHQKMVAEVaKVWEGrmENLPYADQNQLLTMASIIEKETAVAEERDRVASVLINRLRI 238
                 444444442333333556****************************88776555446689*************************************** PP

                 T-----HHHHHHH.T...-S---CCHHC---TT-TTTSSSS-SS-SS---HHHHHHHHS-------EEEE-...-EEEESSHHHHHCT-X CS
        YceG 189 gmrLqsDpTviYg.g...kgrltkkdletdspYNTYkikGLPpgPIanPgkaaieAalnpaktdylYFvakkdgthaFaktleeHnknva 274
                 gmrLq+DpTviYg g   +g+lt+kdlet + YNTY+i+GLPpgPIa Pg+a+++Aa++pakt ylYFva+++g+h+F+++l  Hn++v+
  CTQ27486.1 239 GMRLQTDPTVIYGmGagyTGKLTRKDLETPTAYNTYTISGLPPGPIAVPGEASLKAAAHPAKTPYLYFVADGKGGHTFTTNLVSHNRAVQ 328
                 *************97889999*************************************************999***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2668.65
//
Query:       CTQ27487.1  [L=213]
Description: thymidylate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-57  192.8   0.0      5e-57  192.6   0.0    1.0  1  Thymidylate_kin  Thymidylate kinase
    4.4e-06   27.0   0.1      6e-06   26.6   0.1    1.2  1  AAA_28           AAA domain
    0.00026   20.9   0.0       0.21   11.4   0.0    2.2  2  dNK              Deoxynucleoside kinase
     0.0017   18.9   0.1      0.011   16.2   0.1    2.0  1  AAA_18           AAA domain
  ------ inclusion threshold ------
      0.015   15.6   0.0      0.023   15.0   0.0    1.5  1  AAA_22           AAA domain
      0.039   14.4   0.1       0.36   11.2   0.1    2.2  1  AAA_17           AAA domain
      0.056   13.6   0.8       0.72   10.0   0.8    2.4  1  AAA_33           AAA domain


Domain annotation for each model (and alignments):
>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.6   0.0   1.9e-60     5e-57       1     185 []       8     200 ..       8     200 .. 0.97

  Alignments for each domain:
  == domain 1  score: 192.6 bits;  conditional E-value: 1.9e-60
                      EEESTTSSHHHHHHHHHHHHHHTTE..EEEESSSTTSHHHHHHHHHHH.....TCS---HHHHHHHHHHHHHHTTHHHHHHHHHTT-EEEEES- CS
  Thymidylate_kin   1 iEGlDGaGKttqaellkerlkeegik.vvltrepggteiGekirelll.....keeeleeqteallfaadriehleekikpalkqgktvivdRy 88 
                      iEGl+GaGKtt  +l++e+l+++gi+ +v+trepggt ++ek+r+l+l       e +++++e+l+f+a+r++ +e++ikpal++g++vi dR+
       CTQ27487.1   8 IEGLEGAGKTTARQLVVETLQSAGIHdMVFTREPGGTILAEKLRSLVLdiqstGDEVINDKAEVLMFYAARVQLVETVIKPALARGQWVIGDRH 101
                      8**********************************************988665566678888******************************** PP

                      HHHHHHHHHTTTTTTCHHHHHHGGGTTS..E-SEEEEEESSHHHHHTSCCTTSSTTTSHHHHHHHHHHHHHHHHHHHHTTSTEEEEETTS-HHH CS
  Thymidylate_kin  89 lfSslaYqgakegvdldlvlslnedvll..kPdltflldvdpevalkRlakrdeldeeeeeqldflrkvrerylelakederiliidasksiee 180
                       +S++aYqg ++g+d  ++ +l++ vl+  +P lt++ldv pev+l+R+++r+eld+ e+e+ +f++++r+rylela++d +i ++da++++++
       CTQ27487.1 102 DLSTQAYQGGGRGIDRTMLATLRDAVLGdfRPNLTLYLDVTPEVGLQRARARGELDRIEQESMNFFNRTRARYLELAAADPSIRTVDATQPLDA 195
                      ********************************************************************************************** PP

                      HHHHH CS
  Thymidylate_kin 181 vheeI 185
                      v ++I
       CTQ27487.1 196 VARDI 200
                      *9987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.1   2.3e-09     6e-06       2     143 ..       6     165 ..       5     185 .. 0.66

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.3e-09
      AAA_28   2 ivitGgestGKTtll....eaLaargyp..vv.pEaareileeklakgedalpwv.e.......dllafaervleeqleeeaaa.aankvlfcDrglld 84 
                 ivi G e++GKTt      e L++ g+   v+ +E++ +il ekl++   +++++ +       ++l f +++++      + a a +++++ Dr  l 
  CTQ27487.1   6 IVIEGLEGAGKTTARqlvvETLQSAGIHdmVFtREPGGTILAEKLRSLVLDIQSTgDevindkaEVLMFYAARVQLVETVIKPAlARGQWVIGDRHDLS 104
                 9************76222266666565543336999999999999888777776655333333366666666666655555666899************ PP

      AAA_28  85 tlaYa.raygge..aeaeleaaar.ekrydlvfllppapei..dddgeRredleereaiderlre 143
                 t aY    +g++    a l +a+    r +l ++l+++pe+  ++  +R e +    +i++   +
  CTQ27487.1 105 TQAYQgGGRGIDrtMLATLRDAVLgDFRPNLTLYLDVTPEVglQRARARGELD----RIEQESMN 165
                 ****953445543244446665555999***********99777777775533....22222222 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0012         3       1      27 [.       6      32 ..       6      42 .. 0.81
   2 !   11.4   0.0   8.4e-05      0.21     108     157 ..     119     168 ..     103     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
                EEEEESTTSSHHHHHHHHHCCSTCEEE CS
         dNK  1 ivveGnIgaGKstlvklLskklgvkvf 27
                iv+eG  gaGK+t  +l  ++l+   +
  CTQ27487.1  6 IVIEGLEGAGKTTARQLVVETLQSAGI 32
                89***********99888777765555 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 8.4e-05
                 HHHHHHHHHHHHCCH-SEEEEEE--HHHHHHHHHHCTTCCCT.TS-HHHHH CS
         dNK 108 iykelldnlleelakpdlliYLkasletclerikkRgreeek.kieldYle 157
                 +++ l+d++l ++  p+l  YL++++e+ l+r + Rg+ +   + ++++++
  CTQ27487.1 119 MLATLRDAVLGDFR-PNLTLYLDVTPEVGLQRARARGELDRIeQESMNFFN 168
                 677899999999*9.*********************987755433444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   4.5e-06     0.011       1     119 [.       6     159 ..       6     168 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.5e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.................gvnlrdvakenglllevdpealdeskrldedkldklldaleenss.aleegknlvidg 81 
                 I++ G  G+GKtt  + + + l++                  ++lr+++ + ++  ++  +     k ++ ++ ++ ++++e  ++ al+ g++++ d 
  CTQ27487.1   6 IVIEGLEGAGKTTARQLVVETLQSagihdmvftrepggtilAEKLRSLVLDIQSTGDEVIN----DKAEVLMFYAARVQLVETVIKpALARGQWVIGDR 100
                 89****************9998556666666666666555544444444443333333333....4444444444555555555556555555544444 PP

      AAA_18  82 hlaeleseaakdikk........................vvLtaspeelleRlekRgyeeak 119
                 h      ++     +                         +L++ pe+ l+R ++Rg+ ++ 
  CTQ27487.1 101 HDLSTQAYQGG---GrgidrtmlatlrdavlgdfrpnltLYLDVTPEVGLQRARARGELDRI 159
                 43333333222...1345667777777777777788888*****************976543 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   8.9e-06     0.023       7      70 ..       5      63 ..       1     144 [. 0.60

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.9e-06
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka 70
                 +v+ G  G+GKTt  + ++e+l+ +  +     + vf   p++t +++ lr l+ ++++ +++
  CTQ27487.1  5 YIVIEGLEGAGKTTARQLVVETLQSAGIH-----DMVFTREPGGTILAEKLRSLVLDIQSTGDE 63
                689********************855433.....333555555554444444444444444444 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00014      0.36       2     122 ..      10     153 ..       9     165 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
                 E-TTSSHHHHHHHHHHHH........TEEEEEHHHHHHHHHHTTTS..HSSHHHHCTSHHHHHH..HHHHHHHHHHHHHH.HSSE.EEEEE-.SEEEET CS
      AAA_17   2 GgPGsGKgtqceklveky........gfthlsaGdllreeakrggl..akardemrklpleekk..elqkeaaekiaeea.kkkg.vlvdgh.prikeq 85 
                 G+ G+GK+t+ + +ve +         ft    G +l e  ++  l  +++ de+ + + e+    + + ++ e++ + a ++++ v+ d h  ++++ 
  CTQ27487.1  10 GLEGAGKTTARQLVVETLqsagihdmVFTREPGGTILAEKLRSLVLdiQSTGDEVINDKAEVLMfyAARVQLVETVIKPAlARGQwVIGDRHdLSTQAY 108
                 889*******99999866555322214555555888888887776532445555554444443311334556667777765445535667774455555 PP

                 TEEEESSHHHHHH........HH..SEEEEEE--HHHHHHHHHHH CS
      AAA_17  86 agfldglpkevle........elkpdaiilleadpeeilerrlkd 122
                 +g   g+++ +l+        ++ p++ ++l++ pe+ l+r   +
  CTQ27487.1 109 QGGGRGIDRTMLAtlrdavlgDFRPNLTLYLDVTPEVGLQRARAR 153
                 6667777777754222333337779999******99888886554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.8   0.00028      0.72       2      27 ..       6      37 ..       6     206 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00028
      AAA_33  2 vllvGlpGsGKstlaerllkklg......avl 27
                +++ Gl G+GK+t  + +++ l+      +v+
  CTQ27487.1  6 IVIEGLEGAGKTTARQLVVETLQsagihdMVF 37
                5789*********8888876666444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1717.88
//
Query:       CTQ27488.1  [L=341]
Description: DNA polymerase III, delta prime subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-42  143.0   0.0      1e-41  142.4   0.0    1.2  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
    2.7e-37  127.8   6.2    5.6e-37  126.8   6.2    1.6  1  DNApol3-delta_C  DNA polymerase III, delta subunit, C termina
  ------ inclusion threshold ------
        1.6    8.8   5.6        0.2   11.7   1.3    1.7  2  EPF              Epidermal patterning factor proteins


Domain annotation for each model (and alignments):
>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4   0.0   1.7e-45     1e-41       6     161 ..      18     173 ..      15     175 .. 0.97

  Alignments for each domain:
  == domain 1  score: 142.4 bits;  conditional E-value: 1.7e-45
  DNA_pol3_delta2   6 lkilskalksgrlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqirelieelsrkp 99 
                      +++l ++++ gr +ha+L+++ +g+g ++l  +l++ l+c++++++k+cg+c+sc+ ++ g+hpD+  +++e+ ++ + +d +r+++e+l++++
       CTQ27488.1  18 FEQLVGSYQAGRGHHALLLQSLNGMGGEALIYALCRFLMCRQPEGHKSCGHCHSCQLMQAGTHPDYYALSPEKGKSALGIDAVRDVNEKLYEHA 111
                      57899***************************************************************************************** PP

  DNA_pol3_delta2 100 reskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfsp 161
                      r +  k++ i+da ++t +AaNalLktlEEP+en+ f+L  +++ +lL+t+rSRc   ++ p
       CTQ27488.1 112 RLGGAKVVWISDAALLTDAAANALLKTLEEPPENTWFFLACEEPARLLTTLRSRCRLHHLAP 173
                      *******************************************************9988876 PP

>> DNApol3-delta_C  DNA polymerase III, delta subunit, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   6.2   9.4e-41   5.6e-37       3     116 ..     216     327 ..     214     328 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.8 bits;  conditional E-value: 9.4e-41
                      HHHHHHHHHHHH.HHHHHHT--GGGHHHHSSTTHHHHHHHHHHHHHHHHHHTTT-S.--S-TT-HHHHHHHHHHS-HHHHHHHHHHHHHHHHHH CS
  DNApol3-delta_C   3 rwkqRkallqalkalalkrrdllsllpllnkedalerleWLlslLlDalklqqgaqeqlvnqdqlplikqlakrlsiekLlkilqkllelreqL 96 
                       w +R++l+qal a++l+++d+l+llp ln+e+a++rl+WL+slL+Da+k qqg++  + n+d  pl++qla+ l++++L++i+++++++reqL
       CTQ27488.1 216 LWTARQQLCQAL-ATTLASGDWLALLPILNHEQAAVRLHWLASLLVDAQKRQQGITL-VSNPDVWPLLEQLAHSLPAARLQAIAHDVCTCREQL 307
                      69**********.*******************************************6.************************************ PP

                      HHSTTSSHHHHHHHHHHHHH CS
  DNApol3-delta_C  97 lsisgvNkeLllteqLlrwe 116
                      l+++gvN+eLllte Llrwe
       CTQ27488.1 308 LNVVGVNRELLLTERLLRWE 327
                      *******************8 PP

>> EPF  Epidermal patterning factor proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.3   3.3e-05       0.2       5      24 ..      58      77 ..      57      95 .. 0.80
   2 ?   -3.8   0.2       2.3   1.4e+04      44      50 ..     301     307 ..     301     309 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.3e-05
         EPF  5 spPsCenkCgsCsPCkavqV 24
                + P+ ++ Cg C  C+ +q 
  CTQ27488.1 58 RQPEGHKSCGHCHSCQLMQA 77
                679****************9 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.3
         EPF  44 CkCgnkl 50 
                 C+C+++l
  CTQ27488.1 301 CTCREQL 307
                 9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2924.79
//
Query:       CTQ27489.1  [L=264]
Description: putative metallodependent hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-75  251.5   0.0    9.3e-75  251.3   0.0    1.0  1  TatD_DNase    TatD related DNase
  ------ inclusion threshold ------
       0.03   13.7   0.0       0.42   10.0   0.0    2.2  2  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.3   0.0     1e-78   9.3e-75       1     255 []       4     255 ..       4     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 251.3 bits;  conditional E-value: 1e-78
                 EEEEE-TTSCCC...TTTHHHHHHHHHHTTEEEEEEE-SSGGGHHHHHHHHTT.TTTEEEEE---GGGGGCC.CCHHHHHHHHHHCCCTSEEEEEEEEE CS
  TatD_DNase   1 iDaHcHldskef...eedreeileraeeagvaavvvvgtsskdskavlelakkypnkvyavlGiHPnevdeasedlleelkelanvkhskvvaiGeiGL 96 
                 +D+HcHld  ++   +++ +++l++a+++ v+ ++ v t++   + + el+ + +n v+ ++G+HP + de  +  +e+l+ l  ++++ vva Ge+GL
  CTQ27489.1   4 VDSHCHLDGLDYqtlHKNVDDVLAKAAARDVKFCLAVATTLPGYRSMRELVGTRDN-VVFSCGVHPLNQDE--PWEVETLRAL--AAEEGVVAMGETGL 97 
                 7******98666566999***********************************998.*********88886..6778999999..************** PP

                 ET-CCCCCGHHHHHHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHHHHCGGCCSEEEETT--S-HHHHHHHHHTTEEEEE-GGGGTTTTHHHHHHHHHS CS
  TatD_DNase  97 DyysreestkeaqeevFeeqlrlAkelklplviHlrkaeedlleilkeaaeakakvvlHsfsgsaeeakkflklgyyislsglltfknakelrelvkav 195
                 Dy+++ ++tk +q+  F+ ++r+ +el++p+++H+r+a +d+l+il+e++ +++++vlH+f+++ e+a k+l++g+yis+sg++tf+na++lr++++ v
  CTQ27489.1  98 DYFYT-PETKAQQQSSFRDHIRIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTEDRETAGKLLDMGFYISFSGIVTFRNAEQLRDAARYV 195
                 **666.59******************************************************************************************* PP

                 -GGGEEE---TTSSEECCCTTSE--GGGHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  TatD_DNase 196 pldrlLiETDaPyltpkpyrgkrnepanvayvveklaelkaltleelaeitaeNakrlfk 255
                 pldrlL+ETD+Pyl+p+p+rgk+n+pa v+ v+e++a lk+++le+la++t++N+ +lf+
  CTQ27489.1 196 PLDRLLVETDSPYLAPVPHRGKENQPALVRDVAEYMAVLKGVSLEQLAQQTTDNFATLFH 255
                 **********************************************************97 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.014   1.3e+02     105     129 ..      14      38 ..      10      53 .. 0.91
   2 ?   10.0   0.0   4.6e-05      0.42      26      88 ..      73     129 ..      46     232 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.014
                   HHHHHHHHHHHHHHHHHHHTSEEEE CS
  AP_endonuc_2 105 awerlaeslneladyaekegvklal 129
                   ++++l +++++++++a++++vk++l
    CTQ27489.1  14 DYQTLHKNVDDVLAKAAARDVKFCL 38 
                   689999****************986 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 4.6e-05
                   HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEE CS
  AP_endonuc_2  26 sdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllv 88 
                   ++ e+++lr++++e g+   + ++   f+ p++   +    ++ + ++++i++ ++L+ p++v
    CTQ27489.1  73 EPWEVETLRALAAEEGVVAMGETGLDYFYTPETK--A----QQQSSFRDHIRIGRELNKPVIV 129
                   34479*************8888888888887773..3....34789**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1954.33
//
Query:       CTQ27490.1  [L=477]
Description: fused glucose-specific PTS enzymes: IIBcomponent; IIC component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-84  284.2  32.8    1.1e-84  284.2  32.8    1.5  2  PTS_EIIC  Phosphotransferase system, EIIC
    1.5e-13   50.0   0.3    2.6e-13   49.2   0.3    1.4  1  PTS_EIIB  phosphotransferase system, EIIB
  ------ inclusion threshold ------
      0.096   11.5   0.5       0.24   10.2   0.5    1.7  1  MscS_TM   Mechanosensitive ion channel inner membrane domain 


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.2  32.8   1.9e-88   1.1e-84       1     324 []      13     320 ..      13     320 .. 0.94
   2 ?   -2.8   0.1      0.41   2.5e+03     210     231 ..     350     371 ..     334     387 .. 0.59

  Alignments for each domain:
  == domain 1  score: 284.2 bits;  conditional E-value: 1.9e-88
    PTS_EIIC   1 sdgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvl 99 
                 ++++mlp+ +l+++Gillg+g++++    ++        ++  +++++++ag+ vfan+pl+faig+a g+  +++gv++la+++++ ++ +++a+ ++
  CTQ27490.1  13 GKSLMLPVSVLPIAGILLGVGSANF----SW--------LPAVVSHVMAEAGGSVFANMPLIFAIGVALGFT-NNDGVSALAAVVAYGIMVKTMAVVAP 98 
                 689*******************554....44........4456789*************************6.*******************8888888 PP

    PTS_EIIC 100 llaagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggs 198
                 l  + +      +i++ ++ +tgv+g+ii g++aay+ n+f++   ikLPe+l+ff gkrfvpii++l +++++g++l++iwp+i +++ +++ +   +
  CTQ27490.1  99 LVLHLP----ADEIAAKHLADTGVLGGIISGAIAAYMFNRFYR---IKLPEYLGFFAGKRFVPIISGL-AAIFTGVILSFIWPPIGSAIQTFSQWAAYQ 189
                 888888....79*******************************...**********************.99999*********************9999 PP

    PTS_EIIC 199 gsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlyg......agkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllgsa 291
                 ++ ++++i+gf+er+l+pfGlHh++++pf ++++ +++a+ +q ++g      ag ++a  l+g+f+  m+G+p+a++a+++ a++e++ k+ ++++sa
  CTQ27490.1 190 NPVVAFGIYGFIERCLVPFGLHHIWNVPFQMQIGEYTNAA-GQVFHGdiprymAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPENRAKVGGIMISA 287
                 99*******************************8555555.999999888888777******************************************* PP

    PTS_EIIC 292 altpflfGItepleFgfpfvlnlllfipallag 324
                 alt+fl+GItep+eF+f+fv+++l++i+a+lag
  CTQ27490.1 288 ALTSFLTGITEPIEFSFMFVAPILYVIHAILAG 320
                 *******************************98 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.41
    PTS_EIIC 210 lerllipfGlHhafiapfwfts 231
                   + l+ f + ++ +a+ ++ +
  CTQ27490.1 350 NSSKLWLFPIVGICYAIVYYVI 371
                 4444555555555555555444 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.3   4.4e-17   2.6e-13       3      34 .]     405     436 ..     404     436 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 4.4e-17
                 HHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB   3 IldalGGkdNIesvthCaTRLRltlkDaskvd 34 
                 +++a+GGk+NI+++++C+TRLR+ ++D +kvd
  CTQ27490.1 405 LVAAFGGKENITNLDACITRLRVSVADVAKVD 436
                 689****************************8 PP

>> MscS_TM  Mechanosensitive ion channel inner membrane domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.5     4e-05      0.24     106     171 ..      31     100 ..      15     136 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4e-05
     MscS_TM 106 GlaerHFgwpkesvrrlrralkrlilvllplll....vlilaealsdalardvlGrlaflllllllavfl 171
                 G++ + F+w ++ v++++     ++++ +pl++    +l++++++  ++++ v++  +++ +++++a ++
  CTQ27490.1  31 GVGSANFSWLPAVVSHVMAEAGGSVFANMPLIFaigvALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLV 100
                 89999****************************5554455555555555555555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3605.83
//
Query:       CTQ27491.1  [L=118]
Description: purine nucleoside phosphoramidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-29  101.7   0.0    3.3e-29  101.5   0.0    1.0  1  HIT       HIT domain
      3e-22   79.2   0.0    3.3e-22   79.1   0.0    1.0  1  DcpS_C    Scavenger mRNA decapping enzyme C-term binding


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.0   3.6e-33   3.3e-29       1      97 [.      12     109 ..      12     110 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 3.6e-33
                 TGCC-CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCC...HHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEEEEC- CS
         HIT   1 ekeipstvvyeddlvlafldidpkapghlLvipkkhlselhdlt...eeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHviprr 96 
                 ++eips++vy+d+lv+af+di+p+ap+h+L++p+  +++++d+t   e +l+++++++ k+a++++   + +g+r+++n+++h+gq+v+h+H+H++++r
  CTQ27491.1  12 RREIPSDIVYQDELVTAFRDISPQAPTHILIVPNVLIPTVNDVTaehELALGRMMTVAAKIARDEGL--ADDGYRLIVNCNRHGGQEVYHIHMHLLGGR 108
                 68******************************************9888899***************9..89**************************98 PP

                 T CS
         HIT  97 e 97 
                  
  CTQ27491.1 109 P 109
                 5 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.0   3.7e-26   3.3e-22       2     101 ..       5     106 ..       4     117 .. 0.94

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 3.7e-26
                 -HHHHHHTTSS-B-EEEE-SSEEEEE-SS-SSSEEEEEEESS---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T..-EEEEE--SCCCT--S-S--EE CS
      DcpS_C   2 wvfnilakgkepervvyedekfvvlkDikpkaklhllvipkrdikslrdLtkehlpllkemrekakkvieekyne..vdaeelrvgvhyqPsvyhlHlH 98 
                 ++f +++++++p+++vy+de +++++Di p+a++h+l++p+  i++++d+t+eh   l +m+++a k+++++  +  +++  +++  h  + vyh+H+H
  CTQ27491.1   5 TIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIVPNVLIPTVNDVTAEHELALGRMMTVAAKIARDEGLAddGYRLIVNCNRHGGQEVYHIHMH 103
                 689*********************************************************************9779999******************** PP

                 EEE CS
      DcpS_C  99 vis 101
                 ++ 
  CTQ27491.1 104 LLG 106
                 986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 945.70
//
Query:       CTQ27492.1  [L=124]
Description: hypothetical protein CH1034_180179 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-25   87.8   0.0    3.9e-25   87.6   0.0    1.1  1  DUF1425   Protein of unknown function (DUF1425)


Domain annotation for each model (and alignments):
>> DUF1425  Protein of unknown function (DUF1425)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   2.2e-29   3.9e-25       1      92 []      33     123 ..      33     123 .. 0.99

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 2.2e-29
                 EEEETTEEEEEEEEEEEEEECCCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEEE-SSTT--EEEEEEE CS
     DUF1425   1 vvensvlaagisveelklresngllraqvtlsnkskkdltlqYrFyWyDkqGlevepeespWksltlhgketvtvssvapnpeasqfrlyvr 92 
                 v+e+svlaagis++e+++ +++ + +a++tl+n++++++t++YrF WyD++Gle++p ++p ++++++++++vt+ + a+   a++ rly++
  CTQ27492.1  33 VMESSVLAAGISASEPAVVATEIQATASSTLYNERQQPVTVHYRFFWYDARGLEMHPLDAP-RTIVVPARSSVTLYGSANILGAHKARLYLY 123
                 79***********************************************************.****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1041.94
//
Query:       CTQ27493.1  [L=215]
Description: putative outer membrane lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-36  123.2   0.0    9.7e-36  122.9   0.0    1.1  1  LpoB             Peptidoglycan-synthase activator LpoB
      0.006   16.7   5.7     0.0069   16.5   5.7    1.1  1  DUF2076          Uncharacterized protein conserved in bacteri
  ------ inclusion threshold ------
      0.013   16.0   0.1       0.02   15.3   0.1    1.3  1  DUF3280          Protein of unknown function (DUF2380)
       0.17   12.1   0.0       0.21   11.8   0.0    1.1  1  Helitron_like_N  Helitron helicase-like domain at N-terminus


Domain annotation for each model (and alignments):
>> LpoB  Peptidoglycan-synthase activator LpoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.0   2.2e-39   9.7e-36       4     147 .]      75     212 ..      72     212 .. 0.97

  Alignments for each domain:
  == domain 1  score: 122.9 bits;  conditional E-value: 2.2e-39
        LpoB   4 laaeemvqsllssplveqllkkdgkr..pvlvvssvkNkTsehidtesltkkirraLlksgkvrfvsgaqrerareelreqqesglvdqstaaklgrli 100
                 + +++++++ +++plv+q+l+++g +  ++l+v+sv+N+T++++++ ++t+++r+aL+ +gk+++vs++q + a+++l+ + +++l+++s+a++++r++
  CTQ27493.1  75 PRVRHYDWNGAVQPLVGQMLQASGVNagSILLVDSVNNRTNGSLNAGEATTALRSALAGNGKFTLVSAQQLAVAKQQLGLSPQDSLGSRSKAMGIARNV 173
                 568999********************************************************************************************* PP

        LpoB 101 gAdysLsGkissivkaeggekqvyykitleLtdvetgeivWsgekei 147
                 gA+y+L+++ +++v+        +++++++L+ v+tgei+Wsg++++
  CTQ27493.1 174 GAQYVLYSNATGNVN--------APELKMQLMLVQTGEIIWSGKGAV 212
                 ***************........9*******************9875 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   5.7   1.6e-06    0.0069      90     192 ..      16     126 ..      12     190 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.6e-06
     DUF2076  90 FLsglFGggkkerpqpspqarpaapagqalgqeeqyaaqpgyaq....qqaqpqygqpaaapqp...ggGggFLggAlqtAAGVaGGv.llangleslf 180
                 FL+g  G  ++++p ++++++p++pa++++  ++ +a +   aq    + +++q+gqpa+  +    +g+   L g +  A GV +G+ ll++++++  
  CTQ27493.1  16 FLAGCAGLREQPAPVEEAKPQPQQPAQPQPTVPTVPAVPSVPAQpgpiEHQDQQSGQPAPRVRHydwNGAVQPLVGQMLQASGVNAGSiLLVDSVNNRT 114
                 99999999999966666666666666655555443333222222334445556666666655524566777889999999****888626788888888 PP

     DUF2076 181 sgksgeegaasa 192
                 +g+ ++ +a+ a
  CTQ27493.1 115 NGSLNAGEATTA 126
                 886655555444 PP

>> DUF3280  Protein of unknown function (DUF2380)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.1   4.6e-06      0.02      30      88 ..     122     184 ..     109     211 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.6e-06
     DUF3280  30 avteqlreaLaesgryevvdlapaaaeie....kesnlrkCngceadiArklgAdlvlvgevq 88 
                 ++t++lr+aLa +g++++v+ ++ a + +    + ++    +  +  iAr++gA++vl+    
  CTQ27493.1 122 EATTALRSALAGNGKFTLVSAQQLAVAKQqlglSPQDSLGSRSKAMGIARNVGAQYVLYSNAT 184
                 67999**************98888876666655444445566778889*********987654 PP

>> Helitron_like_N  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.7e-05      0.21      54     129 ..     122     196 ..      89     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.7e-05
  Helitron_like_N  54 sltgeeLkealeeetedee.lkllgklvilpssvpgsprymqekrqdlmaivrelgkP.dlFiTltcndkwpeikeel 129
                      + t  +L++al+++   +  l   ++l +  +++  sp++   +r+++m i+r++g+   l+   t+n + pe+k +l
       CTQ27493.1 122 EATT-ALRSALAGN--GKFtLVSAQQLAVAKQQLGLSPQDSLGSRSKAMGIARNVGAQyVLYSNATGNVNAPELKMQL 196
                      4433.588888887..333377889999999*************************65268999***********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1794.06
//
Query:       CTQ27494.1  [L=275]
Description: thiamin kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-13   50.2   8.6    1.2e-12   48.3   8.6    1.8  1  APH             Phosphotransferase enzyme family
      2e-05   24.3   0.0      3e-05   23.7   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   8.6   1.3e-16   1.2e-12       7     229 ..      30     221 ..      26     230 .. 0.76

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 1.3e-16
                 -.SSCEEEEEEETT--EEEEEE-TT.S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCC CS
         APH   7 ggasnrtylvttpagryvlrrnppa.raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaa 104
                 +g+s  ++ + ++++r vlr+++++  a  ++rr+++ lr L ++ +p+P  +            + ++ey+ g++ ++    + +p+    l  +l +
  CTQ27494.1  30 SGLSGGSVIISDGDRRHVLRQPHDPsAATYHFRRQYHALRRLPARLAPTPLFYS---------PCWMVVEYCAGEVKSE---LPASPQ----LSGLLYD 112
                 66777778888999***********65666666666666666666555554444.........479*************...555555....4577889 PP

                 HHCH.-STTTB-SHHCHTCCHHHHHHCHHH.CCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECC CS
         APH 105 lhqvdpaalpladflaqdlellrqlesata.rllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglgppl 202
                 lhq      p ++++ +   ll+q  +++  +++++++l + ++l++q   + ++          lH D h gN++ ++ + r   +iD+e+ag g+++
  CTQ27494.1 113 LHQQ-----PRFGWRVSLTPLLAQYWQRCDpARRKPRWLRWHQRLRRQGEPRPLR-------LAPLHMDVHAGNIIHNESGLR---LIDWEYAGDGDIA 196
                 9999.....9999999999999999999998999999999777777765555555.......555*************77677...8************ PP

                 HHHHCCHHHCSCHCCCHCHHHHHHHHC CS
         APH 203 yDlavllrswtseldpeflaallraye 229
                  +la ++   t  ++ ++++a++r+ +
  CTQ27494.1 197 LELAAVW-I-TPGERRRLVEAYARRAA 221
                 *******.4.44444455555544443 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   3.4e-09     3e-05     145     186 ..     163     202 ..     144     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.4e-09
                     EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHHHHHHHH CS
  Choline_kinase 145 vvfcHnDlqegNillnkeekklvlIDFEYagynyrgfDlanh 186
                     +   H D+  gNi+   +e+ l lID+EYag   ++ +la +
      CTQ27494.1 163 LAPLHMDVHAGNIIH--NESGLRLIDWEYAGDGDIALELAAV 202
                     5556***********..999****************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 2265.27
//
Query:       CTQ27495.1  [L=340]
Description: beta N-acetyl-glucosaminidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-98  328.8   0.0      5e-98  328.4   0.0    1.0  1  Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.4   0.0  2.8e-102     5e-98      13     314 ..       7     319 ..       4     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 328.4 bits;  conditional E-value: 2.8e-102
                    B-SE-S--HHHHHHHHHH--SEEE--GGGTSSHHHHHHHHHHHHHH-SS....S--EEEE---BTTB---SSS.---S-HHHHHHHT-HH....HH CS
  Glyco_hydro_3  13 evseekkseeaaellkkyqvGgiilfaenledtkqleelieaarqaseksrlgiPlllavDqegGlvqrlgeg.tlfPsalalaatssld....li 103
                    +v++ +  +e++e+l+++ vGg+ilf++n++d++ql+el++++r as++      l++avDqegG+vqr++eg t +P+a+++aa   ++    l+
     CTQ27495.1   7 DVEGYELDAEEREILAHPLVGGLILFTRNYHDPAQLRELVRQIRDASRN-----HLVVAVDQEGGRVQRFREGfTRLPAAQSFAALLGMEeggkLA 97 
                    5555667789***************************************.....9**********************************99999** PP

                    HHHHHHHHHHHHHHT--EE---B-----STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHTT-EEEEEEETTGTT-SSETTTSEEB----HHHHHHT CS
  Glyco_hydro_3 104 kelgriiakelralgididfaPvvdvnrdprngigvrsFsedpelvaalaaamvkGlqgagvaatvKHFpghGdgavdshkelptvdhseeelrev 199
                     e+g+ +a+e++a++idi+faPv+dv++ +++ ig+rs++edp+ + ++a+++++G+++ag+++t+KHFpghG++++dshke+p +++    +r+ 
     CTQ27495.1  98 AEAGWLMASEMIAMDIDISFAPVLDVGHISAA-IGERSYHEDPQKALTMARHFIDGMHAAGMKTTGKHFPGHGAVTADSHKETPFDPRAASVIRDH 192
                    *******************************9.*************************************************************** PP

                    THHHHHHHH.HTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-HHHHHHHHHHHT-SBEES-S---SG... CS
  Glyco_hydro_3 200 dlvpfqaai.eagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvvvsDalamkeiadrggkeeavvlaLkAGvDilLvpeertse... 291
                    d+++f+++i e+ +d++M+aHv++p+ld++pa+gs ++l++vLR elGFdGv++sD+l+m+++a++g+++e+ +++L+AG+D++Lv+++r+ +   
     CTQ27495.1 193 DMAVFKSLIaEQRLDAIMPAHVIYPELDPRPASGSAYWLKTVLRGELGFDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMILVCNNRKGAvsv 288
                    ******************************************************************************************866888 PP

                    ........HHHHHHHHHTTSS-HHHHHHHHH CS
  Glyco_hydro_3 292 ........ikalkkavkeGeltearidesvr 314
                             +++ k+ ++G+ +++++ +s+r
     CTQ27495.1 289 ldnlspikAERVTKLYHKGSFSRQELRDSAR 319
                    8999888888899999999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2704.13
//
Query:       CTQ27496.1  [L=214]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-70  235.4   0.0    5.1e-70  235.2   0.0    1.0  1  UPF0227   Uncharacterised protein family (UPF0227)


Domain annotation for each model (and alignments):
>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.2   0.0   2.9e-74   5.1e-70       1     186 [.      35     211 ..      35     212 .. 0.99

  Alignments for each domain:
  == domain 1  score: 235.2 bits;  conditional E-value: 2.9e-74
     UPF0227   1 kllYlHGFdS.SPlshkaqllsqfiaedvlaielsvlklkedpqqalkeleklvaelgddnillvGssLGGyyatrlgerfglrqvllnPalkplenla 98 
                 +++YlHGFdS SP++h++++++qfi++dv+ i++s++++k+d+q++lke++k+++ + dd++l++G++LGGy+a+r+g+++++rq+++nP+l+p+en++
  CTQ27496.1  35 MIIYLHGFDSnSPGNHEKVMQLQFIDPDVRLISYSTRHPKHDMQHLLKEVDKMLQLTADDRPLICGVGLGGYWAERIGFLCDIRQAVFNPNLFPHENME 133
                 79************************************************************************************************* PP

     UPF0227  99 gklgeeavqstqetyvleeyhiielkalelsrlkrperilvllskqDevldyrravaefraaaeiveddg.dHafkdvsehlqqiiafl 186
                 gk+++    +       eey++i++k+++++r+k+++r+lv+ls+qDe ld++r+++ +++++ei++d++ +H+fk++s+hlq+++af+
  CTQ27496.1 134 GKIDR----P-------EEYADIATKCVTNFREKNRDRCLVVLSRQDEALDSQRSADLLHHYYEIIWDEEqTHKFKNISPHLQRLKAFK 211
                 *****....8.......9***************************************************99*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1858.00
//
Query:       CTQ27497.1  [L=434]
Description: respiratory NADH dehydrogenase 2/cupric reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-70  237.7   0.2    1.9e-70  237.5   0.2    1.0  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    2.9e-17   63.0   1.6    2.5e-10   40.8   0.4    3.0  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    3.1e-09   36.9   6.0      0.039   13.6   0.0    4.1  4  DAO             FAD dependent oxidoreductase
    6.4e-06   25.5   2.3       0.23   10.5   0.1    3.6  3  Lycopene_cycl   Lycopene cyclase protein
    1.9e-05   24.7   2.7      0.012   15.6   0.0    3.6  4  NAD_binding_9   FAD-NAD(P)-binding
    0.00031   20.9   2.0      0.039   14.2   0.2    2.9  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0013   17.5   0.4       0.69    8.5   0.0    3.4  3  HI0933_like     HI0933-like protein
     0.0016   17.8   0.0       0.71    9.1   0.0    2.3  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
     0.0017   17.5   0.0        1.7    7.7   0.0    2.3  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
     0.0051   15.7   1.4        0.4    9.5   0.1    2.9  3  Trp_halogenase  Tryptophan halogenase
  ------ inclusion threshold ------
      0.025   13.8   1.6        4.7    6.4   0.1    2.9  3  FAD_binding_3   FAD binding domain
      0.051   13.8   0.1        3.1    8.1   0.0    2.4  2  TrkA_N          TrkA-N domain
       0.09   12.4   2.0        8.8    6.0   0.2    2.3  2  ApbA            Ketopantoate reductase PanE/ApbA
        0.1   12.0   1.3        1.3    8.3   0.1    2.3  2  ThiF            ThiF family


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.5   0.2   1.4e-73   1.9e-70       1     294 []       6     338 ..       6     338 .. 0.96

  Alignments for each domain:
  == domain 1  score: 237.5 bits;  conditional E-value: 1.4e-73
                  CSEEEE--SHHHHHHHHHHHH.....HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEE CS
                  xxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaq.....agakvtlvelegtclnggcllskallgvaedaeias...evvkklnqgielllgeevvkidpgkkkvklekk 90 
                  k++v++GgG++Gl++a++l++     ++ak+tlv ++++ +++++ll+++++g+ +++  a+    +    n+g+++ lg +vv+i ++ k+++l ++
   CTQ27497.1   6 KKIVIVGGGAGGLELATQLGRklgrhKKAKITLV-DRNHSHLWKPLLHEVATGSLDEGVDALsylAH--ARNHGFQFQLG-SVVDINREGKTITLGEL 99 
                  589******************999988*******.***********************988887633..56779******.**************999 PP

                  EC......TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..............SEEEEES-SHHHHHHHHHHHHHT-.. CS
                  xx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Pyr_redox_2  91 ke......gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp..............krivvvGgGyiGvElAaalaklgk.. 166
                  ++        e+k+ yd+lv+A Gs+++d+++pGv+en+++l ++ ++a+++++++l+               +i++vGgG++GvEl+a+l+++ k  
   CTQ27497.1 100 RNekgellVAERKLPYDTLVMALGSTSNDFNTPGVKENCIFL-DNPHQARRFHQEMLNlflkysanlgangkVNIAIVGGGATGVELSAELHNAVKql 196
                  98999***9999******************************.****************************99*****************98887778 PP

                  .............EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-E CS
                  .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 167 .............evtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklgle 251
                               +vtlvea++r+l+al++++s a++++l+k Gv+v ++t+v+ +d+ g    ++++dge i+adl+v+a+G+++ +  + e  gle
   CTQ27497.1 197 hsygykgltnealNVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTSADAGG----LHTKDGEYIEADLMVWAAGIKAPDFMK-EIGGLE 289
                  88888*******99***************************************9999777....8***********************998.****** PP

                  EEETTEEE--TTSBES.STTEEE-GGGC.....TECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxx.xxxxxxxxxxx.....xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 252 lderggivvdeflrtn.vpgiyaiGDva.....ggkggpelaqaAvqqG 294
                  +++ +++vv ++l+t+ + +i+aiGD+a     +g  +p +aqaA+q++
   CTQ27497.1 290 TNRINQLVVEPTLQTTrDADIFAIGDCAscarpEGGFVPPRAQAAHQMA 338
                  **************998****************999***********97 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   6.4e-07   0.00082       1      35 [.       7      46 ..       7      86 .. 0.86
   2 !   40.8   0.4     2e-13   2.5e-10       1      68 [.     172     254 ..     172     262 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 6.4e-07
                EEEEECSSHHHHHHHHHH.HHTT....SEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgal.aelg....kkVtvversdkll 35
                k+v+vGgG  glElA+ l ++lg    +k+t+v+r+   l
  CTQ27497.1  7 KIVIVGGGAGGLELATQLgRKLGrhkkAKITLVDRNHSHL 46
                79****************8556655558*******98777 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 2e-13
                 EEEEECSSHHHHHHHHHH...............HHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgal...............aelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeieg 68 
                 ++++vGgG +g+El ++l               ++ + +Vt+ve+++++l++l++ +s + +++l+k+g++vl++t v++ + 
  CTQ27497.1 172 NIAIVGGGATGVELSAELhnavkqlhsygykglTNEALNVTLVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTSADA 254
                 589***************99999998888877777779****************************************99874 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   4.9e-05     0.063       1      29 [.       7      42 ..       7      46 .. 0.86
   2 !    6.1   0.0    0.0057       7.3     150     207 ..      66     129 ..      51     158 .. 0.71
   3 ?    4.6   0.7     0.016        21       2      29 ..     173     217 ..     172     223 .. 0.72
   4 !   13.6   0.0     3e-05     0.039     151     245 ..     231     315 ..     223     341 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.9e-05
                EEEEECTSHHHHHHHHHHHHT.T......EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarr.g......Vtllekg 29
                ++vi+GGG  Gl  A +L r+ g      +tl++++
  CTQ27497.1  7 KIVIVGGGAGGLELATQLGRKlGrhkkakITLVDRN 42
                59****************66565667899*****98 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0057
                 HHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE..EECTEEE.E.....EEEEEEE--GGGHHHH CS
         DAO 150 aalaraaealGveilegtevtgleeedgkvwgve..rttpgen.d.....aadavVnaaGawsdll 207
                  ++++ a+++G ++ +g  v+++++e gk  ++   r+++ge  +      +d++V+a G  s+ +
  CTQ27497.1  66 LSYLAHARNHGFQFQLG-SVVDINRE-GKTITLGelRNEKGELlVaerklPYDTLVMALGSTSNDF 129
                 578899***********.999**665.343333356544455544677776788***999887744 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.016
                 EEEECTSHHHHHHHHHH.....HHT..T..........EEEEESS CS
         DAO   2 vviiGGGiiGlstAyeL.....arr..g..........Vtllekg 29 
                 ++i+GGG +G+    eL     + +  g          Vtl+e+g
  CTQ27497.1 173 IAIVGGGATGVELSAELhnavkQLHsyGykgltnealnVTLVEAG 217
                 9*********99999996554312233255577788889999988 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 3e-05
                 HHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE CS
         DAO 151 alaraaealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpe 245
                 a  +++ +lGv++l++t vt+ +     ++g+  +t+ ge  +ad  V aaG+ +  ++   ke+   ++  r   lv++p ++++ + a i+++ +
  CTQ27497.1 231 AAHNELTKLGVRVLTQTMVTSAD-----AGGL--HTKdGEYIEADLMVWAAGIKAPdFM---KEI-GGLETNRINQLVVEP-TLQTTRDADIFAIGD 315
                 5667899**************83.....7889..555598856699********99666...444.233666666666655.344445556666555 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   0.00018      0.23       2      38 ..       8      47 ..       7      67 .. 0.83
   2 !    5.4   0.1    0.0062         8       2      35 ..     173     219 ..     172     227 .. 0.67
   3 !    7.4   0.0    0.0015       1.9     255     300 ..     307     352 ..     296     383 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
  Lycopene_cycl  2 vvviGaGpAglslAarl...teakpglkvvlieaspsllf 38
                   +v++G+G+ gl lA +l      +++ k++l++   s l+
     CTQ27497.1  8 IVIVGGGAGGLELATQLgrkLGRHKKAKITLVDRNHSHLW 47
                   89***************55444567788999988888777 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0062
  Lycopene_cycl   2 vvviGaGpAglslAarl.............teakpglkvvlieasps 35 
                    ++++G+G+ g+ l a+l                + +l+v+l+ea++ 
     CTQ27497.1 173 IAIVGGGATGVELSAELhnavkqlhsygykGLTNEALNVTLVEAGER 219
                    79***************555444444433333345566666666665 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0015
  Lycopene_cycl 255 eqkvlaiGaaaglvhPaTGYsvarslaeapllasaiaaalressls 300
                    ++  +aiG  a+  +P  G+  +r++a+ ++ + a+ ++l++ + +
     CTQ27497.1 307 DADIFAIGDCASCARPEGGFVPPRAQAAHQMATCALNNILAQMKGK 352
                    34589*************************99*******9976444 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.4e-06     0.012       1      36 [.       9      44 ..       9      53 .. 0.89
   2 ?   -0.2   0.0      0.71   9.1e+02     137     155 ..     106     124 ..      66     125 .. 0.60
   3 !    5.8   0.1    0.0099        13       1      32 [.     174     215 ..     174     233 .. 0.72
   4 ?   -0.0   0.0      0.61   7.9e+02     129     154 ..     250     275 ..     228     277 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.4e-06
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsep 36
                   +ivG+G+ Gl ++++L ++  ++++ +itl+d++++
     CTQ27497.1  9 VIVGGGAGGLELATQLGRKLGRHKKAKITLVDRNHS 44
                   7*******************99999********654 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.71
  NAD_binding_9 137 lladgaslaadaVvLAlGh 155
                    ll  +++l +d +v+AlG 
     CTQ27497.1 106 LLVAERKLPYDTLVMALGS 124
                    3456678999999999995 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0099
  NAD_binding_9   1 aivGaGprGlavlerLlara..........kkkspleitlfd 32 
                    aivG+G++G+ + ++L +             + + l++tl++
     CTQ27497.1 174 AIVGGGATGVELSAELHNAVkqlhsygykgLTNEALNVTLVE 215
                    8*************9998875444444444344446666665 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.61
  NAD_binding_9 129 eradgqavlladgaslaadaVvLAlG 154
                    ++ad   ++++dg+ ++ad  v A G
     CTQ27497.1 250 TSADAGGLHTKDGEYIEADLMVWAAG 275
                    3344446999************9998 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   3.1e-05     0.039       1      29 [.      10      43 ..      10      46 .. 0.81
   2 ?    5.3   0.1     0.018        23       1      30 [.     175     219 ..     175     221 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-05
                   EE--SHHHHHHHHHHHCC.....TEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.....gfdvlllekrd 29
                   IvG+G++Gl +A  L ++     +++++l+++++
     CTQ27497.1 10 IVGGGAGGLELATQLGRKlgrhkKAKITLVDRNH 43
                   9**************98444334669*****975 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.018
                    EE--SHHHHHHHHHHH...............CCTEEEEEE-SSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLa...............kagfdvlllekrdr 30 
                    IvG+G++G  + ++L+               ++ ++v+l+e+++r
     CTQ27497.1 175 IVGGGATGVELSAELHnavkqlhsygykgltNEALNVTLVEAGER 219
                    9********999999933333322222222112335666666665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00054      0.69       2      36 ..       7      46 ..       6      51 .. 0.82
   2 ?    0.9   0.1      0.12   1.5e+02       2      20 ..     172     190 ..     171     197 .. 0.78
   3 ?    3.7   0.0     0.016        21     115     164 ..     232     276 ..     211     281 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00054
                 SEEEE--SHHHHHHHHHH.....HHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisa.....akrgkrVlllekakklg 36
                 +++++GgGa Gl  A ++     ++++++++l++++++ +
   CTQ27497.1  7 KIVIVGGGAGGLELATQLgrklgRHKKAKITLVDRNHSHL 46
                 79***************97666556788999999998765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.12
                  SEEEE--SHHHHHHHHHHH CS
  HI0933_like   2 dviviGgGaAGlmaAisaa 20 
                  +++++GgGa G+  +++++
   CTQ27497.1 172 NIAIVGGGATGVELSAELH 190
                  689********97777665 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.016
                  HHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 115 llkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                    +el++ gv++ ++t v+s+  +++g   ++tk++e +ead +v A G 
   CTQ27497.1 232 AHNELTKLGVRVLTQTMVTSA--DAGG---LHTKDGEYIEADLMVWAAGI 276
                  5789****************9..5555...99999***********9985 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0035       4.5     167     195 ..       8      41 ..       2      54 .. 0.62
   2 !    9.1   0.0   0.00056      0.71     165     305 .]     171     314 ..     142     314 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0035
  Pyr_redox_3 167 vvViGgknSavDaAlelvrk.....gaeVtvvtr 195
                  +v++Gg+  + + A++l rk      a++t+v+r
   CTQ27497.1   8 IVIVGGGAGGLELATQLGRKlgrhkKAKITLVDR 41 
                  5666666666666666555444434455555555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00056
  Pyr_redox_3 165 qkvvViGgknSavDaAlelvrkgaeVtvvtrgseieke.e...sdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevk 258
                   +++++Gg+ ++v+   el ++ ++ + +  +   ++  +    +   ++ p   +r+  + ++e  k+  +  ++ + ++     ++t+dg+ +e  
   CTQ27497.1 171 VNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEAlNvtlVEAGERILPALPPRISGAAHNELTKLGVRVLTQTMVTSADAGGLHTKDGEYIE-A 267
                  57899*****************99999987665433321211145556999999999999887754444444444444444555689999997765.5 PP

  Pyr_redox_3 259 ddvvlatGykpdlsflkk.slfeldedgrpvlteeteetnvpglflaG 305
                  d +v a G k   +f+k+  ++e+++ ++ v+++  + t   ++f +G
   CTQ27497.1 268 DLMVWAAGIKAP-DFMKEiGGLETNRINQLVVEPTLQTTRDADIFAIG 314
                  888999999876.77777799999999999999999999999999988 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0013       1.7     192     226 ..       6      43 ..       3      49 .. 0.85
   2 !    7.4   0.0    0.0017       2.2     188     216 ..     167     195 ..     139     203 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0013
  K_oxygenase 192 kriaVvGsGqSaaeifedllrr...qkkvelklvtrse 226
                  k+i++vG+G  + e++ +l r+    kk++++lv r++
   CTQ27497.1   6 KKIVIVGGGAGGLELATQLGRKlgrHKKAKITLVDRNH 43 
                  79*****************9987645569999998876 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0017
  K_oxygenase 188 llakkriaVvGsGqSaaeifedllrrqkk 216
                   + k +ia+vG+G ++ e+  +l++  k+
   CTQ27497.1 167 ANGKVNIAIVGGGATGVELSAELHNAVKQ 195
                  677889*****************998664 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00031       0.4       1      33 [.       7      41 ..       7      45 .. 0.87
   2 ?    0.3   0.1      0.18   2.4e+02       1      24 [.     172     195 ..     172     224 .. 0.79
   3 ?    3.0   0.0     0.028        36     188     212 ..     255     279 ..     232     308 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00031
                    EEEEE--SHHHHHHHHHHHHHTTTS..SEEEEEE- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgk..levtlves 33
                    kivivGGG  G   A+ l++ l ++  +++tlv+ 
      CTQ27497.1  7 KIVIVGGGAGGLELATQLGRKLGRHkkAKITLVDR 41
                    79****************99985545799***986 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.18
                     EEEEE--SHHHHHHHHHHHHHTTT CS
  Trp_halogenase   1 kivivGGGtaGwlaAaalakalkg 24 
                     +i ivGGG  G    a l++a+k+
      CTQ27497.1 172 NIAIVGGGATGVELSAELHNAVKQ 195
                     599********8777777777654 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.028
                     EEEEETTS-EEE-SEEEE-SGGG-I CS
  Trp_halogenase 188 eslrledgreveadlfiDcsGfrgl 212
                      +l+++dg+ +eadl++ + G ++ 
      CTQ27497.1 255 GGLHTKDGEYIEADLMVWAAGIKAP 279
                     5799*****************9875 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0088        11       4      23 ..       8      27 ..       6      59 .. 0.79
   2 ?    6.4   0.1    0.0037       4.7       2      25 ..     171     193 ..     170     217 .. 0.88
   3 ?   -0.8   0.0      0.53   6.8e+02     280     302 ..     304     326 ..     272     326 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0088
                   EEEE--SHHHHHHHHHHHHT CS
  FAD_binding_3  4 VlIVGaGpaGlmlallLsea 23
                   ++IVG+G  Gl la+ L ++
     CTQ27497.1  8 IVIVGGGAGGLELATQLGRK 27
                   78************999875 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0037
                    EEEEEE--SHHHHHHHHHHHHTTH CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGv 25 
                    ++++IVG+G +G+ l+ +L++a v
     CTQ27497.1 171 VNIAIVGGGATGVELSAELHNA-V 193
                    7899***************988.5 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.53
                    SSEETTEEE-GGGTEEE-STTSH CS
  FAD_binding_3 280 kyrkgrvflaGDAaHihpPtgGq 302
                    + r+  +f +GD a +  P gG+
     CTQ27497.1 304 TTRDADIFAIGDCASCARPEGGF 326
                    345559*************9995 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0024       3.1       1      33 [.       8      45 ..       8      55 .. 0.87
   2 ?    3.4   0.0     0.071        91       1      21 [.     173     193 ..     173     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0024
                EEEES-SHHHHHHHHHHHHTT.....EEEEEEESSHHH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLsegg.....kdvvvidkdeer 33
                i+i+G G  G +la +L ++       +++++d+++++
  CTQ27497.1  8 IVIVGGGAGGLELATQLGRKLgrhkkAKITLVDRNHSH 45
                89***************99444899966******9976 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.071
                 EEEES-SHHHHHHHHHHHHTT CS
      TrkA_N   1 iiiiGlGrvGrslaeeLsegg 21 
                 i+i+G G +G +l  eL+++ 
  CTQ27497.1 173 IAIVGGGATGVELSAELHNAV 193
                 79***************9854 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2    0.0069       8.8       1      33 [.       8      46 ..       8      57 .. 0.81
   2 ?    5.8   0.1    0.0076       9.7       1      44 [.     173     212 ..     173     232 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0069
                EEEES-SHHHHHHHHHHHH.HTHC....EEEE-SCH.HH CS
        ApbA  1 iailGaGaiGsllaakLak.agad....vtlilrsr.rl 33
                i+i+G Ga G  la +L +  g++    +tl++r+  +l
  CTQ27497.1  8 IVIVGGGAGGLELATQLGRkLGRHkkakITLVDRNHsHL 46
                89********999999955555555666******98665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0076
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEE CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrlt 44 
                 iai+G Ga G  l a+L++a  + + ++ +     l ++ l++t
  CTQ27497.1 173 IAIVGGGATGVELSAELHNAVKQLHSYGYKG----LTNEALNVT 212
                 89****************9999988887777....444555555 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1     0.001       1.3      19      51 ..       6      42 ..       4      47 .. 0.90
   2 ?    2.0   0.2     0.084   1.1e+02      19      37 ..     171     189 ..     157     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.001
                SEEEEE--SHHHHHHHHHHHH.HTTT...EEEEEESS CS
                xxxxxxxxxxxxxxxxxxxxx.xxxx...xxxxxxxx RF
        ThiF 19 skvllvGaGglGsellknLal.sGvg...kltlvDnD 51
                +k+++vG G+ G el+++L + +G     k+tlvD  
  CTQ27497.1  6 KKIVIVGGGAGGLELATQLGRkLGRHkkaKITLVDRN 42
                599*****************9999977889****975 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.084
                 SEEEEE--SHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
        ThiF  19 skvllvGaGglGsellknL 37 
                 + +++vG G+ G el  +L
  CTQ27497.1 171 VNIAIVGGGATGVELSAEL 189
                 789***********98877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3089.47
//
Query:       CTQ27498.1  [L=179]
Description: hypothetical protein CH1034_180185 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-11   44.4  18.4    1.1e-11   44.4  18.4    2.3  2  Rick_17kDa_Anti  Glycine zipper 2TM domain
    3.4e-05   23.7  16.4    3.4e-05   23.7  16.4    2.4  2  Gly-zipper_Omp   Glycine zipper
    0.00033   20.3  17.7    0.00033   20.3  17.7    2.2  2  Gly-zipper_YMGG  YMGG-like Gly-zipper
     0.0013   18.5   1.4     0.0013   18.5   1.4    1.6  2  TraT             Enterobacterial TraT complement resistance p
  ------ inclusion threshold ------
      0.062   13.6   0.1       0.13   12.6   0.0    1.5  2  Chlam_OMP6       Chlamydia cysteine-rich outer membrane prote
        3.3    7.2   6.0        5.1    6.6   2.4    2.0  2  DUF533           Protein of unknown function (DUF533)
        9.4    6.4  21.3       0.26   11.4   8.9    2.2  2  Bacteriocin_IIc  Bacteriocin class II with double-glycine lea


Domain annotation for each model (and alignments):
>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.4   7.2         7   1.8e+04      29      34 ..      13      18 ..       5      25 .. 0.49
   2 !   44.4  18.4   4.2e-15   1.1e-11       2      42 .]      73     113 ..      72     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: -6.4 bits;  conditional E-value: 7
  Rick_17kDa_Anti 29 vGAaaG 34
                     v Aa+G
       CTQ27498.1 13 VAAALG 18
                     333333 PP

  == domain 2  score: 44.4 bits;  conditional E-value: 4.2e-15
  Rick_17kDa_Anti   2 GaliGAaaGgvaGaaigggggrvlGavvGAaaGavaGnaig 42 
                      G ++GA+aGgv+G+++ggg+gr++++vvGA+ G++aGn+i+
       CTQ27498.1  73 GSVLGAVAGGVIGHQFGGGHGRSVATVVGALGGGYAGNQIQ 113
                      99**************999********************97 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   4.1      0.41   1.1e+03      21      34 ..       8      21 ..       4      30 .. 0.68
   2 !   23.7  16.4   1.3e-08   3.4e-05       2      43 ..      73     117 ..      71     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.41
  Gly-zipper_Omp 21 gtGaliGAavGaav 34
                    g+G+ ++Aa+G a+
      CTQ27498.1  8 GIGIGVAAALGVAA 21
                    56666666666543 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 1.3e-08
  Gly-zipper_Omp   2 GaaiGAaaGaliGgavg...grgtGaliGAavGaavGgliGaamd 43 
                     G+++GA+aG++iG   g   gr + +++GA  G+++G++i  am+
      CTQ27498.1  73 GSVLGAVAGGVIGHQFGgghGRSVATVVGALGGGYAGNQIQGAMQ 117
                     66777777777777433345589*****************98886 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   3.4      0.34   8.7e+02       5      19 ..       7      21 ..       3      32 .. 0.53
   2 !   20.3  17.7   1.3e-07   0.00033       2      46 .]      69     111 ..      68     115 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.34
                     XXXXXX..XXXXXXXXX CS
  Gly-zipper_YMGG  5 rGAaiG..AaaGAvvGa 19
                     +G +iG  Aa+G +  a
       CTQ27498.1  7 AGIGIGvaAALGVA--A 21
                     44444422333332..2 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 1.3e-07
                      ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-H CS
  Gly-zipper_YMGG   2 gavrGAaiGAaaGAvvGaliGsgggkGAaiGAaaGalaGgaiGaq 46 
                      ++++G + GA+aG v+G ++G  gg+G  +  ++Gal+Gg++G+q
       CTQ27498.1  69 NRIAGSVLGAVAGGVIGHQFG--GGHGRSVATVVGALGGGYAGNQ 111
                      7899*****************..99**888888888888888875 PP

>> TraT  Enterobacterial TraT complement resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3       1.3   3.2e+03     109     121 ..      12      24 ..       2      38 .. 0.53
   2 !   18.5   1.4   5.1e-07    0.0013      79     138 ..      65     124 ..      54     149 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
        TraT 109 sagaalggglvGg 121
                 +++aalg+++v+g
  CTQ27498.1  12 GVAAALGVAAVAG 24 
                 2333333333333 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 5.1e-07
        TraT  79 aaaegalkaGfggalagaaagaaigaanggsagaalggglvGglvga.iagalvedvtYlm 138
                 ++ e+ +++   ga+ag+++g ++g+  +g + a+++g+l Gg++g  i+ga+ +++tY+ 
  CTQ27498.1  65 VQDENRIAGSVLGAVAGGVIGHQFGGG-HGRSVATVVGALGGGYAGNqIQGAMQDNDTYTT 124
                 555666667777899999999999999.77788889999******97799*********86 PP

>> Chlam_OMP6  Chlamydia cysteine-rich outer membrane protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.9e-05      0.13      16      54 ..      29      68 ..      18      82 .. 0.85
   2 ?   -3.6   0.0       5.8   1.5e+04      46      58 ..     124     136 ..     114     139 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-05
  Chlam_OMP6 16 qavpeyatvgspypi.eitavgkkdcvdvvitqqlpceve 54
                +  p+ya v s  pi e + + +++c +v +t + p++ e
  CTQ27498.1 29 DRGPQYAQVVSSTPIkETVKTPRQECRNVTVTHRRPVQDE 68
                5679***********556778999*********9998765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.8
  Chlam_OMP6  46 tqqlpcevefvrs 58 
                 t q  c++ + +s
  CTQ27498.1 124 TTQQRCKTVYDKS 136
                 4444555555555 PP

>> DUF533  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.034        87      28      53 ..       8      33 ..       1      78 [. 0.65
   2 ?    6.6   2.4     0.002       5.1       4      56 ..      76     124 ..      70     154 .. 0.61

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.034
      DUF533 28 alklGglAalGglAykayqnwqanqq 53
                 + +G +AalG+ A+  ++   ++ q
  CTQ27498.1  8 GIGIGVAAALGVAAVAGLNVLDRGPQ 33
                5678999*****99999986554444 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.002
      DUF533   4 ggaaaggllglllGskkgrklgkkalklGglAalGglAykayq.nwqanqqeaa 56 
                  ga+agg++g  +G+++gr++++ + +lG     Gg A +++q ++q+n + ++
  CTQ27498.1  76 LGAVAGGVIGHQFGGGHGRSVATVVGALG-----GGYAGNQIQgAMQDNDTYTT 124
                 46777888888888888666665555555.....66666666632233332222 PP

>> Bacteriocin_IIc  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   4.5      0.22   5.7e+02      32      55 ..       5      24 ..       3      27 .. 0.66
   2 ?   11.4   8.9    0.0001      0.26      19      59 ..      69     109 ..      66     111 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.22
  Bacteriocin_IIc 32 alaGaatGaatlgilgaavGavvG 55
                      laG ++G+a++  ++a+    +G
       CTQ27498.1  5 MLAGIGIGVAAALGVAAV----AG 24
                     689*******44444444....44 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.0001
  Bacteriocin_IIc  19 kcaqgtvggivggalaGaatGaatlgilgaavGavvGavvG 59 
                      ++++g v g+v+g+++G + G+  +  ++++vGa++G+ +G
       CTQ27498.1  69 NRIAGSVLGAVAGGVIGHQFGGGHGRSVATVVGALGGGYAG 109
                      56788999999999999999999**************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1409.64
//
Query:       CTQ27499.1  [L=729]
Description: Ferric aerobactin receptor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-28  100.4  49.8    3.9e-28   99.5  49.7    1.5  1  TonB_dep_Rec  TonB dependent receptor
      3e-19   69.6   1.1      7e-19   68.4   1.1    1.7  1  Plug          TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5  49.7   4.4e-32   3.9e-28      12     467 ..     238     725 ..     167     728 .. 0.74

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 4.4e-32
                   EEEEEEEEEEEEEETTTTEEEEEEE.........EEEEEEEEEECCCEECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE. CS
  TonB_dep_Rec  12 dnllanngdylrytdggdlgsalsr.........gylgtnplyygdnysetdnkrlrlgydydlddnlswklslraglnYsstdgdsdynnsglgg. 98 
                   +  l+  ++y++ +++ d+g+ l           + ++t++   +d   +t+++  +l+y    +d + ++++l ++++Y+    d++ +++ +++ 
    CTQ27499.1 238 NRQLQLVTQYYKSQGDDDYGLWLGKnmsavtsggKAYTTDG-LNSDRIPGTERHLISLQY----SDADFFGQNLVSQVYYR----DESLTFYPFPTl 325
                   55555556666666666666544445554444335555555.555555666677777766....55555666677688888....555555555555 PP

                   .......EEEEEEEECEEE..EEEEEEEEEEEEEEEEEE......EEEEEEEEEEE...EEEEECCBEESCCTC.......CSEEEEEEEEEEEEEE CS
  TonB_dep_Rec  99 .......grsynrdndyyg..lgnvlaaeldlngdlwfG......snladgldyrk...lsddgydaydplnps.......gdasdsvdrdsyglya 170
                          ++s ++d+d+yg  l+ +++  +  ++dl++G      +++a+++ +     +   g+                + ++++++ ++ + ++
    CTQ27499.1 326 tkgqvssFSSSQQDTDQYGakLTLNSQPLA--GWDLTWGldadheTFNANQMFFDLpqsMA-SGG--------LhnesiytTGRYPGYSISNVAPFL 411
                   555777777777777888855555555555..66666885555332222222233211111.233........1333444547777778888888** PP

                   EEEEEEETTEEEEEEEEEEEETTCSSSS.....................EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEE.. CS
  TonB_dep_Rec 171 qdnikltdrltltlGlRydhysvfgkdlrag..................afsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggs.. 247
                   q +++l+d +t+++G+Ry++++   +d+++                   + ++++++f+ ++g++ ++t+  +  +++s+g   P+ g +y+ g+  
    CTQ27499.1 412 QSSYDLNDIFTVSGGVRYQWTENRVDDFVGYaqqqdiangkarsadaikGGKTDYDNFLFNAGIVAHLTERQQTWFNFSQGVELPDPGKYYGIGKyg 508
                   ************************9999999999999988888888888888888********9977***999989****************87755 PP

                   ...CCC...CCEEEECSTT---EEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEESSSSCSTTTCSEEEEEEEEEEEEEEEEEEEEE.EETTEEE CS
  TonB_dep_Rec 248 ...nga...ggalsngnpdLkPEtsknyelGlkldddrlnltlayFridiknfittdpdgpslgglgdfqyqNvgkarikGvElelsyr.ltpgWgl 337
                      ng    +++++  +  L+  ++++yelG+++++d+l+ +la+++++ +  i+   ++        ++ ++ +k ri+GvE +++y+  +++W++
    CTQ27499.1 509 aavNGHlplISSVNVDDSPLQGIKVNSYELGWRYTGDNLRTQLAAYYSTSDKTIVVNRTDM-------TIDVQSDKRRIYGVEGAVDYFiPDSDWSV 598
                   5442223344444444677******************************999999999987.......677788999************99999**5 PP

                   EEEEEEEEEEEECECEEECTTTTSSTTEESEEEEEEEEEECSEEEEEEEESEEEEEEECCSSEEEEECECCEEEE--EEEEEEEEEEEESSSEEEEE CS
  TonB_dep_Rec 338 glsgggytYydagddsdaddggnplpnvPkhtanlgltYkfpaggWgaglllagarYvavggrrygdaantfrrvpgYtlldlslgYklpknltlsl 434
                      gg+++ +++++++d+ ++  +++ +++ +a++++ +    ++W+     ++++   ++ +  +daa++  ++ gY ++d+  +Y lp + +l++
    CTQ27499.1 599 ---GGNFNVLKSQVQTDGRWQKWDVTLASPSKATAWVGW--APDPWS-----LRVQS--QQVFDLSDAAGN--KLEGYNTVDFIGSYALPVG-KLTF 680
                   ...55577777777766666666677789**********..7778**.....46655..222333355566..999***********77744.**** PP

                   EEESTTETCSCEEESTT............TTTCCEB--SEEEEEE CS
  TonB_dep_Rec 435 gvnNLfdkryyassgyy............glggypgpgRtfrlgl 467
                   +++NL+++ y +  g+             +l+ y g gRtf l++
    CTQ27499.1 681 SIENLLNEDYVTIWGQRapllysptygssSLYEYKGRGRTFGLNY 725
                   *******44333333335555555556666888889999998876 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   1.1   7.8e-23     7e-19       3     107 ..      41     142 ..      39     143 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 7.8e-23
                 GCCSSEEEEEEHHHHHHT..TTSSHHHHHTT.STTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHC CS
        Plug   3 kdtpgsvsvvtaediekq..gatsladalqg.vpgvnvsssgggggassisiRGlgsnrvlvlvDGvpianggsgagdlssidpedierievlkGpasa 98 
                  + ++++ v+  ++ie+q  g + ++d+l++ +pg++  +s++g ++ ++++RG    ++ vl+DGv++++++ ++++l+ idp +ie iev++ +a++
  CTQ27499.1  41 AEMAQTTWVIEGQEIEQQvqGGKEFKDVLAQlIPGID--VSSQGRTNYGMNMRGR---AIVVLIDGVRLNSSRTDSRQLDAIDPFNIEHIEVIS-GATS 133
                 5788999***********988****************..79*************9...9***********************************.7777 PP

                 TTSSTGSSE CS
        Plug  99 lyGsdaigG 107
                 lyG++++gG
  CTQ27499.1 134 LYGGGSTGG 142
                 ********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5203.76
//
Query:       CTQ27500.1  [L=211]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-15   54.5   0.2    1.6e-14   53.4   0.2    1.6  1  TetR_N       Bacterial regulatory proteins, tetR family
    4.2e-05   23.5   0.3    0.00015   21.7   0.1    1.9  3  TetR_C_13    Tetracyclin repressor-like, C-terminal domain
    0.00023   21.5   0.6    0.00059   20.1   0.1    1.9  2  TetR_C_11    Tetracyclin repressor-like, C-terminal domain
     0.0093   16.1   0.0      0.021   14.9   0.0    1.5  1  TetR_C_17    Tetracyclin repressor-like, C-terminal domain
     0.0099   16.1   0.3     0.0099   16.1   0.3    2.0  2  TetR_C_6     BetI-type transcriptional repressor, C-terminal
  ------ inclusion threshold ------
       0.02   14.6   0.5      0.024   14.3   0.5    1.0  1  DUF885       Bacterial protein of unknown function (DUF885)
      0.036   14.1   0.0       0.11   12.5   0.0    1.9  1  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
      0.042   13.5   0.0      0.072   12.7   0.0    1.4  1  DUF1367      Protein of unknown function (DUF1367)
      0.061   13.8   0.1       0.11   13.0   0.1    1.4  1  SLED         SLED domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.2   8.3e-18   1.6e-14       2      47 .]      25      70 ..      24      70 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 8.3e-18
                HHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  2 ldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                ld A+ lf+++Gy+at++++++++ G  +++lY  F +Ke+L++a+
  CTQ27500.1 25 LDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEFVNKEGLFRAV 70
                899*****************************************97 PP

>> TetR_C_13  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.6   7.1e+03      71      85 ..      20      34 ..       4      46 .. 0.59
   2 ?   -0.1   0.0      0.43   8.5e+02      33      74 ..      58      99 ..      54     111 .. 0.69
   3 !   21.7   0.1   7.4e-08   0.00015       5      90 ..      96     181 ..      92     203 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.6
                -TTS-HHHHHHHHHH CS
   TetR_C_13 71 aadadaeelaeffwi 85
                ++da  ++   +fw+
  CTQ27500.1 20 DRDAALDKAMTLFWQ 34
                445555555666664 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.43
                HTGGGS-TTHHHHHHHHHHHHHHHHHHHHHHHHCTTSS-TTS CS
   TetR_C_13 33 qEvaalpesfrerleevledwqkrvaacleeaqeageiaada 74
                 E  + +  fr+ l++ ++++ ++ +a+l ++ ++ + a   
  CTQ27500.1 58 AEFVNKEGLFRAVLDRYISRFAAKHEAVLFAEGKSVDRALRD 99
                566777778999999999999999998887766655555554 PP

  == domain 3  score: 21.7 bits;  conditional E-value: 7.4e-08
                 HHHHHHHHHHHHHHTTTT----HHHHHHHTGGGS-TTHHHHHHHHHHHHHHHHHHHHHHHHCTTSS-TTS-HHHHHHHHHHHHHHH CS
   TetR_C_13   5 rlrafvedakagmeryefkrGCLvGnLgqEvaalpesfrerleevledwqkrvaacleeaqeageiaadadaeelaeffwigWeGA 90 
                 +lr++++  ++ ++ +e   GC++ n    +aa ++++ + +++  +  ++ +++ l++ q++ge+ a +d+++la+f+    +G 
  CTQ27500.1  96 ALRDYFTAVATCFTSKETPAGCFIINTSAALAASSTDIANTIKSRHAMQEQALTQFLQQRQAQGELPAGRDVAQLAQFLNCVLQGM 181
                 68888888899999999999**********************************************************98777765 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.93   1.9e+03      32      54 ..      54      76 ..      38      86 .. 0.52
   2 !   20.1   0.1     3e-07   0.00059       6      94 ..      92     182 ..      87     201 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.93
   TetR_C_11 32 rallaeaqrdpelaealrerlle 54
                + l ae  +++ l +a+ +r++ 
  CTQ27500.1 54 PTLYAEFVNKEGLFRAVLDRYIS 76
                44444444444444444444433 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 3e-07
   TetR_C_11   6 slrgDLrallralaealas...pragallrallaeaqrdpelaealrerlleprraalravlrrAvarGelradadvelvldlllgpllyrl 94 
                 s+   Lr + +a+a+ ++s   p++  +++  +a a++++++a+ +     + + +al + l++ +a+Gel+a+ dv+ +++ l  +l    
  CTQ27500.1  92 SVDRALRDYFTAVATCFTSketPAGCFIINTSAALAASSTDIANTIKS-RHAMQEQALTQFLQQRQAQGELPAGRDVAQLAQFLNCVLQGMS 182
                 778889999999999999977666667888888888999*******99.99999*************************9998876665555 PP

>> TetR_C_17  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     1e-05     0.021      36      89 ..     132     185 ..     123     193 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTS---SS-HHHHHHHHHHHHHHHHHHH CS
   TetR_C_17  36 errayleeRyerlvealkellqeGvergEfkPqlplesiakylisfldGlilet 89 
                 +  + +++R+   ++al+++lq+  ++gE+    ++++ a++l  +l G+ +++
  CTQ27500.1 132 DIANTIKSRHAMQEQALTQFLQQRQAQGELPAGRDVAQLAQFLNCVLQGMSISA 185
                 5567799*******************************************9875 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.1   2.1e+03      49      49 ..      52      52 ..      18      84 .. 0.58
   2 !   16.1   0.3   4.9e-06    0.0099      30      90 ..     124     185 ..      94     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.1
                H CS
    TetR_C_6 49 r 49
                 
  CTQ27500.1 52 K 52
                2 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 4.9e-06
                 HHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH.TTSCTTSTHHHHHHHHHHHHHHHHHHH CS
    TetR_C_6  30 waeaardpelaelqrenyarlrsnlrallaelae.gglradadaeaaAerlaAlidGLwlra 90 
                  a aa++ ++a   +  +a   + l++ l++ ++ g+l+a+ d+++ A+ l+ ++ G++++a
  CTQ27500.1 124 AALAASSTDIANTIKSRHAMQEQALTQFLQQRQAqGELPAGRDVAQLAQFLNCVLQGMSISA 185
                 5788889999999999999999********99999***********************9987 PP

>> DUF885  Bacterial protein of unknown function (DUF885)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.5   1.2e-05     0.024      77     213 ..      32     166 ..      11     183 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
                 T-CCCCHHHHHHHHHCGTTSSCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT.-S-HHHHHHHHHHHHHHHGTSSHHCCC....HH.CCCCCC.... CS
      DUF885  77 lralagpvqqlpsllseepfateedleaylarlaavpaaldqaranlregaaaglvpprrqvekvieqlrgllagaaaeasa....lvaplaele.aek 170
                 ++++    ++l++l+++  +++++ +++++++   ++a+ld ++++++++ +a l++    v++++ ++ +++a    ++++    +         ++ 
  CTQ27500.1  32 FWQHGYEATSLADLVEATGAKAPTLYAEFVNKEGLFRAVLDRYISRFAAKHEAVLFAEGKSVDRALRDYFTAVATCFTSKETpagcF-------IiNTS 123
                 4444555899********************************************************999777764322222234552.......14333 PP

                 HHHHHHHHHH.HHHHHHHHHHHHHHHHHCCHHHS-BSS...HHH CS
      DUF885 171 ealraeleaalaeavkpayaeladfleeellpaarkda.pdGee 213
                 +al+a+ +++ a+ +k   a   + l++ l+++  + + p G++
  CTQ27500.1 124 AALAASSTDI-ANTIKSRHAMQEQALTQFLQQRQAQGElPAGRD 166
                 4444444444.444444444444444222222222111355554 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.5e-05      0.11       2      34 ..     142     174 ..     141     185 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.5e-05
                  HHHHHHHHHHHHHHC-CT---SCHHHHHHHHHH CS
  HTH_Tnp_Tc5   2 pelEkaLleWirqlrergipitgelirekAqel 34 
                  + +E+aL ++++q++++g+ + g+ + + Aq+l
   CTQ27500.1 142 AMQEQALTQFLQQRQAQGELPAGRDVAQLAQFL 174
                  579****************************98 PP

>> DUF1367  Protein of unknown function (DUF1367)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.6e-05     0.072      83     143 ..      57     118 ..      32     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.6e-05
     DUF1367  83 laavagsesvlkeaadeylakvakkRaeklisidksld.afrewvtveaGfydivelpdGsl 143
                  a+++++e+  + + d+y+ + a k +  l    ks+d a r++ t  a  ++ +e+p+G  
  CTQ27500.1  57 YAEFVNKEGLFRAVLDRYISRFAAKHEAVLFAEGKSVDrALRDYFTAVATCFTSKETPAGCF 118
                 578999********************99999999999769********************65 PP

>> SLED  SLED domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   5.5e-05      0.11      46     103 ..     125     182 ..     118     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.5e-05
        SLED  46 naaykpkqvlklLkkgeggeveiitakiegkshtvklpvvesakevadfleklcekle 103
                 ++a ++  + + +k++++++++ +t  +++++ + +lp+ ++ +++a+fl+ +++ ++
  CTQ27500.1 125 ALAASSTDIANTIKSRHAMQEQALTQFLQQRQAQGELPAGRDVAQLAQFLNCVLQGMS 182
                 67888999*******************************************9998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1567.67
//
Query:       CTQ27501.1  [L=85]
Description: hypothetical protein CH1034_180188 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-19   69.7   0.1    2.1e-19   69.3   0.1    1.2  1  DUF1471   Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.1   1.1e-23   2.1e-19       2      56 .]      34      85 .]      33      85 .] 0.98

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 1.1e-23
                EEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEEEE CS
     DUF1471  2 qpigtisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAelYK 56
                +++gtis+s   +++ +led+l++kAde+GA +YrIts+++  +++lh+tA++YK
  CTQ27501.1 34 HKVGTISAS-AGTNLGSLEDQLAQKADEMGATSYRITSVTG--PNTLHGTAVIYK 85
                79*******.*******************************..***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 651.23
//
Query:       CTQ27502.1  [L=319]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-26   91.0   0.1      9e-26   90.4   0.1    1.3  1  Ldt_C     L,D-transpeptidase C-terminal domain
    1.4e-18   67.7   0.0    2.2e-18   67.1   0.0    1.3  1  YkuD      L,D-transpeptidase catalytic domain
    6.2e-08   32.6   0.0    2.1e-07   30.9   0.0    1.9  2  LysM      LysM domain


Domain annotation for each model (and alignments):
>> Ldt_C  L,D-transpeptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.1   1.5e-29     9e-26       1      67 []     242     308 ..     242     308 .. 0.99

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 1.5e-29
       Ldt_C   1 PvKvsvEPdgsryvEvHqPLSrseeddpqtvpltlskelkkfledaevdkakvkaalerrsGmPvev 67 
                 P+K+svEPdg+r+vEvHqPLS++ +ddpqt+p+tl++++++f +++++d +++++a++ rsGmP++v
  CTQ27502.1 242 PIKASVEPDGRRLVEVHQPLSEHIDDDPQTLPITLNAAMTAFKQAPQTDGTVMERAMNYRSGMPIDV 308
                 9****************************************************************98 PP

>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   3.7e-22   2.2e-18       4     146 .]     102     238 ..      99     238 .. 0.77

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 3.7e-22
                 EEEETTTTEEEEEEETTE.EEEEEE-BEBTTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTTCECCCCEEE-STTS.- CS
        YkuD   4 ivvdlaeqrllvlyengk.lvlsfpvsvGgkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskvalgkvkfvfpngsg.i 100
                 +v++lae rl ++y  gk +v  +p+ +G +  g + TP+++ +++ k++nptw+++ +i r ++  ++ + p  ++   ++  +g         +g +
  CTQ27502.1 102 LVINLAELRL-YYYPPGKnEVTVYPIGIG-QLGGTTITPTMVTTVSDKRANPTWTPTANI-RARYKAMGIELPAVVPAGPDN-PMGHHAIRLAAYGGvY 196
                 79*****888.555655538899******.5556679*****************766665.666666776677666655555.6666666666666647 PP

                 EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEEEE CS
        YkuD 101 yiHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpvvi 146
                  +Hgt+a+  f+   g+r S+GCirl+++d+k+ly+++ +gt+v i
  CTQ27502.1 197 LLHGTNAD--FGI--GMRVSSGCIRLRDNDIKALYNTISPGTKVNI 238
                 78*77777..555..5788*************************88 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   3.5e-11   2.1e-07       2      44 .]      45      89 ..      44      89 .. 0.94
   2 ?   -1.6   0.0      0.51     3e+03      33      43 ..     227     238 ..     218     238 .. 0.68

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 3.5e-11
                EE-TT-..-HHHHHHHCTCHHHHHHHHC.TCSSCGG--TTEEEEEE CS
        LysM  2 tVkkGD..TLwsIAkrygitveklleaN.nlsspdkifpGqkLkiP 44
                +V + D  +L++IAk+y++ + +ll+aN +++++  +++G++L+iP
  CTQ27502.1 45 HVVQDDggSLEAIAKKYNVGFLALLQANpGVDPYV-PRAGSVLTIP 89
                67888888********************9999999.*********9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.51
                 G.G--TTEEEEE CS
        LysM  33 d.kifpGqkLki 43 
                   +i pG+k  i
  CTQ27502.1 227 YnTISPGTKVNI 238
                 447999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2503.35
//
Query:       CTQ27503.1  [L=1148]
Description: transcription-repair coupling factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-30  105.2   0.5    1.9e-29  101.9   0.0    2.7  3  TRCF            TRCF domain
    8.4e-25   87.3   0.0    3.4e-24   85.4   0.0    2.1  1  CarD_CdnL_TRCF  CarD-like/TRCF domain
    1.1e-21   77.2   1.1    8.1e-18   64.8   0.3    2.5  2  Helicase_C      Helicase conserved C-terminal domain
    1.7e-21   76.2   0.0    4.4e-21   74.9   0.0    1.8  1  UvrB_inter      UvrB interaction domain
    5.1e-21   75.2   0.1    1.4e-20   73.8   0.1    1.8  2  DEAD            DEAD/DEAH box helicase
    2.8e-12   47.0   0.0    1.3e-11   44.8   0.0    2.2  3  ResIII          Type III restriction enzyme, res subunit
    3.7e-07   30.1   0.1    3.1e-05   23.9   0.0    2.8  2  UB2H            Bifunctional transglycosylase second domain
    0.00044   19.6   0.0    0.00097   18.4   0.0    1.5  1  ERCC3_RAD25_C   ERCC3/RAD25/XPB C-terminal helicase
  ------ inclusion threshold ------
       0.22   11.8   1.0        2.1    8.6   0.2    3.1  2  AAA_22          AAA domain


Domain annotation for each model (and alignments):
>> TRCF  TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         9   1.8e+04      31      45 ..     558     572 ..     554     574 .. 0.82
   2 ?   -0.4   0.0      0.75   1.5e+03      39      66 ..     667     694 ..     661     701 .. 0.75
   3 !  101.9   0.0   9.5e-33   1.9e-29       1      92 [.    1006    1097 ..    1006    1099 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 9
        TRCF  31 eeeldeleeeLiDrF 45 
                  e+++++++eL D +
  CTQ27503.1 558 AEKVRDVAAELLDIY 572
                 688999999999988 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.75
        TRCF  39 eeLiDrFGklpeevenLlevarlkllak 66 
                 ++ +DrF + p  +e L +  + k +a+
  CTQ27503.1 667 DNFRDRFANWPVRIEMLSRFRSAKEQAQ 694
                 6788999999999998887766666554 PP

  == domain 3  score: 101.9 bits;  conditional E-value: 9.5e-33
        TRCF    1 ldvdalipeeYipdeserlelYkriasieteeeldeleeeLiDrFGklpeevenLlevarlkllakklgiekikekkkkleitfsekakidv 92  
                  l+++ l+p+++ipd+++rl++Ykrias+++e++l+e++ eLiDrFG lp++++nLl++arl+++a+klgi+k++ ++k+ +i+f+ek+++++
  CTQ27503.1 1006 LRMPSLLPDDFIPDVNTRLSFYKRIASAKNEQDLEEIKVELIDRFGRLPDAARNLLDIARLRQQAQKLGIRKLESNEKGGVIEFNEKNNVNP 1097
                  57899**********************************************************************************99986 PP

>> CarD_CdnL_TRCF  CarD-like/TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   1.7e-27   3.4e-24       1      96 []     477     572 ..     477     572 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 1.7e-27
  CarD_CdnL_TRCF   1 lkvGDyVvhedhGiGriegiekrevegaekeylvleyadkkgdklyvPvdqldlirkyiske..epkldklggkrwektkekakkgvkeeaaelv 93 
                     l++G+ Vvh +hG+Gr+ g+++ e+ g + eyl l+ya+  ++klyvPv++l+li++y++    ++ l+klgg +w ++++ka ++v++ aael+
      CTQ27503.1 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAN--DAKLYVPVSSLHLISRYAGGAeeNAPLHKLGGDAWTRARQKAAEKVRDVAAELL 569
                     689************************************..89****************8889999***************************** PP

  CarD_CdnL_TRCF  94 kly 96 
                     ++y
      CTQ27503.1 570 DIY 572
                     987 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00027      0.54      12      74 ..     645     711 ..     636     716 .. 0.82
   2 !   64.8   0.3   4.1e-21   8.1e-18       9     110 ..     802     906 ..     794     907 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00027
                 HTTTTSEEEEEESSHHHHHH.HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESG CS
  Helicase_C  12 leeeggkilifvntidrlek.vklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatd 74 
                   e+++++ + v+t+  +++  + ++ ++    +++ +l    +++e+ +ileq  +g++d+Li t 
  CTQ27503.1 645 AVENHKQVAVLVPTTLLAQQhYDNFRDRFanwPVRIEMLSRFRSAKEQAQILEQAAEGKIDILIGTH 711
                 567788888888888866556677767777677999999999**********************995 PP

  == domain 2  score: 64.8 bits;  conditional E-value: 4.1e-21
                 HHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.SSHHHHHHHH CS
  Helicase_C   9 llkleeeggkilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.rnvtsyiqri 104
                 +l ++ +gg+++   n +++++k ++ l e   + ++a+ hg++  +e e+++++f +++++vL++t+++e+Gidip +n++i+  ++ +++++++q +
  CTQ27503.1 802 ILRETLRGGQVYYLFNDVENIQKaADKLAELVpEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADhFGLAQLHQLR 900
                 4567789************998886666444469******************************************************899******** PP

                 TTSSST CS
  Helicase_C 105 GRtgRa 110
                 GR+gR 
  CTQ27503.1 901 GRVGRS 906
                 *****5 PP

>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0   2.2e-24   4.4e-21       2      91 .]     129     217 ..     128     217 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 2.2e-24
  UvrB_inter   2 elkvgqkidreellrkLvelqYerndvelkrGtFrvrGdtveifpasaeevairieffgdeiesireidpltgkslekleeitifPakhf 91 
                  +k+gq+++r+ l  +L+ ++Y++ d+++++G+++ rG  +++fp+  +++++r++ff+dei+s+r +d  ++++le++ +i ++Pa++f
  CTQ27503.1 129 VMKKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDLFPMG-SDQPYRLDFFDDEIDSLRLFDVDSQRTLEEVAAINLLPAHEF 217
                 689********************************************.5***************************************98 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       5.3   1.1e+04      44      64 ..      98     118 ..      89     155 .. 0.77
   2 !   73.8   0.1   7.2e-24   1.4e-20       1     172 [.     602     762 ..     602     766 .. 0.83

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 5.3
                 TSTS-EEEEEESSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        DEAD  44 gktgpkalivePtreLaeqtl 64 
                   t  + ++++P   L++ ++
  CTQ27503.1  98 LPTMQRGVLIVPVSTLMQRVC 118
                 556678899999999998775 PP

  == domain 2  score: 73.8 bits;  conditional E-value: 7.2e-24
                 -HHHHHHHHHHHTT......CEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHH CS
                 xxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgg......gdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlsk 93 
                 t+ Qa+ai+++l++       d lv++++G GKT++++ +++ +v     ++++++ +++Pt+ La+q+++n++ ++ +  +r++++    +a++q + 
  CTQ27503.1 602 TPDQAQAINAVLSDmcqplaMDRLVCGDVGFGKTEVAMRAAFLAV-----ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQI 695
                 789*********555555657888******************777.....7899************************977777766666666666666 PP

                 HH...TT.CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HH CS
                 xx...xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD  94 ld...ng.vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kd 172
                 l+   +g +di++gt++ l++ ++     l+++ +l++DE +r+     ++ i+++ + ++           ++ l+AT+  ++
  CTQ27503.1 696 LEqaaEGkIDILIGTHKLLQSEVK-----LRDLGLLIVDEEHRFGVR-HKERIKAMRADVD-----------ILTLTATPIpRT 762
                 64222337********99998554.....*****************9.9999999988882...........999999987555 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.2   6.4e+03      44      81 ..      30      66 ..      26      77 .. 0.78
   2 ?   -2.6   0.0       2.5   4.9e+03       9      39 ..     395     425 ..     391     453 .. 0.81
   3 !   44.8   0.0   6.7e-15   1.3e-11       2     169 ..     599     758 ..     598     760 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.2
                HHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG. CS
      ResIII 44 lierllkkgkeekflflvprkslleqtleefkkflsea 81
                l++++++ +++  +++++p  +   ++ +e+++f+++ 
  CTQ27503.1 30 LVAEMAE-RHNGPVVLVAPDMQNALRLNDEIRQFTDSM 66
                5555665.46669999**99999999999999998765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.5
                 HHHHHHHT......TTSEEE.EEESTTSTHHH CS
      ResIII   9 eeaienlleklkskrdkrgl.ikmaTGtGKTl 39 
                  ea+ ++l+ +k    k++l ++ aTG G  l
  CTQ27503.1 395 REALSEMLARIK-VAPKHVLrLEEATGNGRYL 425
                 689999999999.88888888******99754 PP

  == domain 3  score: 44.8 bits;  conditional E-value: 6.7e-15
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B--. CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke...igkkvsgdkkka. 96 
                 +e  + Q++ai+++l+ + +      l+    G GKT va++++    +++k  ++ +lvp++ l +q +++f++ + +   +    + + s +++ + 
  CTQ27503.1 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK--QVAVLVPTTLLAQQHYDNFRDRFANWPVRiemLSRFRSAKEQAQi 695
                 567899*********99988889999***********************977..9******************99998876555554444555555547 PP

                 ........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---SEEEEEESS- CS
      ResIII  97 .kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekfkeavllglTATp 169
                  ++ ++ +++il+ t + l+++           +     ++i+DE Hr+g   + ++i+ +  +  +l lTATp
  CTQ27503.1 696 lEQAAEGKIDILIGTHKLLQSEV----------KLRDLGLLIVDEEHRFGV-RHKERIKAMRADVDILTLTATP 758
                 78889999999999999999999..........4555669***********.88888999989999*******9 PP

>> UB2H  Bifunctional transglycosylase second domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.5e-08   3.1e-05       2      42 ..     131     171 ..     130     206 .. 0.89
   2 ?    3.0   0.0      0.05     1e+02      30      63 ..     579     613 ..     571     616 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.5e-08
        UB2H   2 ypGaalsaaqleqeLellgYrkvsnvtrpGeyavsgnriel 42 
                 ++G++ls+++l++ Le +gYr+v++v + Geya++g+ ++l
  CTQ27503.1 131 KKGQRLSRDALRDQLEGAGYRHVDQVMEHGEYATRGALLDL 171
                 68********************************9988776 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.05
        UB2H  30 pG.eyavsgnriellrRgFdfpdgaeparrvrlrf 63 
                 +G  ++ ++++++l++ gF+f   +++a+ ++  +
  CTQ27503.1 579 AGfAFKHDREQYQLFCDGFPFETTPDQAQAINAVL 613
                 454688999********************998766 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.8e-07   0.00097      86     153 ..     842     908 ..     809     916 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.8e-07
  ERCC3_RAD25_C  86 yGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvli.qisshfgsrrqeaqrlGriLrakk 153
                    +G+++e+e  +++++f+++ ++n+++   + +t iD+P+an +i   + hfg   q  q  Gr+ r+ +
     CTQ27503.1 842 HGQMRERELERVMNDFHHQ-RFNVLVCTTIIETGIDIPTANTIIiERADHFG-LAQLHQLRGRVGRSHH 908
                    6888889999******886.8*******************977614555565.5677777788877765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2    0.0011       2.1       9     113 ..     625     743 ..     624     774 .. 0.54
   2 ?   -1.4   0.0       1.3   2.6e+03      90     115 ..     879     902 ..     803     915 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0011
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee.................erpevv....fvtlpsstsskdllrellralglelka.......erlsseell 79 
                 +v+G +G GKT ++ r +  ++  +++++                  r++++    ++++ s   s++                      ++++ + l+
  CTQ27503.1 625 LVCGDVGFGKTEVAMRAAFLAV--ENHKQvavlvpttllaqqhydnFRDRFAnwpvRIEMLSRFRSAKE-------------QaqileqaAEGKIDILI 708
                 69*********99887776663..445555566655555555554433333334333333333322222.............23333333333444444 PP

      AAA_22  80 ...ealeqalraravielliiDEaqhlrseealeeLr 113
                    ++l+  ++ r+  +lli+DE +++   ++ e ++
  CTQ27503.1 709 gthKLLQSEVKLRD-LGLLIVDEEHRF-GVRHKERIK 743
                 42233444444444.59******9999.544444443 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.3
      AAA_22  90 avielliiDEaqhlrseealeeLrsl 115
                      +ii+ a+h+   ++l +Lr +
  CTQ27503.1 879 T-ANTIIIERADHF-GLAQLHQLRGR 902
                 3.378999999999.99999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 8231.23
//
Query:       CTQ27504.1  [L=399]
Description: outer membrane-specific lipoprotein transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-15   55.7   0.8    8.3e-15   55.7   0.8    1.9  2  MacB_PCD         MacB-like periplasmic core domain
    9.7e-14   51.6   5.9    9.7e-14   51.6   5.9    2.9  3  FtsX             FtsX-like permease family
  ------ inclusion threshold ------
      0.014   15.3   1.6      0.034   14.0   0.5    2.1  2  Pam17            Mitochondrial import protein Pam17
      0.016   15.2   1.4      0.041   13.9   1.4    1.7  1  Gly-zipper_Omp   Glycine zipper
      0.076   12.9   4.8       0.21   11.5   4.2    2.1  2  Rick_17kDa_Anti  Glycine zipper 2TM domain
       0.71   10.2   4.7        1.2    9.4   0.0    2.8  3  Sigma_reg_N      Sigma factor regulator N-terminal


Domain annotation for each model (and alignments):
>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.8   2.8e-18   8.3e-15       1     166 [.      27     204 ..      27     240 .. 0.68
   2 ?   -3.4   2.6       3.5   1.1e+04       5      24 ..     270     289 ..     266     339 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 2.8e-18
    MacB_PCD   1 slltvLGiaiGvaaviaivslgeglqasvlsqisdlgnlvtvtpgkgsgeslsdpdvealrrevp.veavapvv.....tvrgggsgeeevtvvgvdpd 93 
                 s+l+ +Gi++Gv+a+++++s+++g+ + ++ +i +l   ++++ ++gs ++   p+ ea   +++ v++vap+      +  +++s +   ++ g dp 
  CTQ27504.1  27 SWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILSAKQGSVNPQQLPEREA---KLNgVTRVAPITtgdvvL-QSARSVAV-GVMLGIDP- 119
                 789*******************************8844456777665555544444432...2455******95444211.12211111.23444554. PP

    MacB_PCD  94 yfkvfglklaeGrffte.......adlrggpnvvvigeelaerlf.pvGdtirl.................kpftVvGvledppgsgsalgddavylp 166
                          a+  ++t+       +dl++g++ v++ge+la +l    Gd+ir+                 + ftV+G + +     s  +  +++++
  CTQ27504.1 120 ---------AQNDPLTPylvnvkqSDLQAGKYNVILGEQLAGQLGvNRGDKIRVmvpsasqftpmgrvpsqRLFTVIGTFAAN----SEVDGYQMLTN 204
                 .........3333333333333339******************99967**************99999888666******9552....22233333333 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.5
    MacB_PCD   5 vLGiaiGvaaviaivslgeg 24 
                 +L+++++vaa+ +i+slg  
  CTQ27504.1 270 LLSLIVAVAAFNIITSLGMM 289
                 58888999998888888755 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.24   7.2e+02      67      88 ..      26      47 ..       9      55 .. 0.68
   2 ?   -0.2   0.4      0.48   1.4e+03      32      47 ..     268     283 ..     263     291 .. 0.48
   3 !   51.6   5.9   3.3e-17   9.7e-14       3      96 .]     296     392 ..     294     392 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.24
        FtsX 67 itvliiivlllllallagllsi 88
                 ++l +i++ l ++ l+++ls+
  CTQ27504.1 26 VSWLSTIGITLGVMALVTVLSV 47
                4556666666666666666665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.48
        FtsX  32 alviGlglgllaaqll 47 
                 +l+++l+++++a +++
  CTQ27504.1 268 GLLLSLIVAVAAFNII 283
                 3333333333333333 PP

  == domain 3  score: 51.6 bits;  conditional E-value: 3.3e-17
        FtsX   3 eigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfs...selkisidlitvliiivlllllallagllsiskilkkep 96 
                 e++il++ G++ +q++ +++++++  ++v++++G +lg+l+a  l++++  +       +l++ i +++v++i++++++lall++l+++++++ ++p
  CTQ27504.1 296 EVAILQTQGLTPRQIMAVFMVQGASAGIVGALLGAVLGALLASQLNNLMPIIGAFldgAALPVAIEPLQVIVIALVAMVLALLSTLYPSWRAAATQP 392
                 99***********************************999999977777666442344**********************************99887 PP

>> Pam17  Mitochondrial import protein Pam17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.51   1.5e+03      37      75 ..      31      69 ..      21      74 .. 0.80
   2 ?   14.0   0.5   1.1e-05     0.034      23      95 ..     256     335 ..     234     344 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.51
       Pam17 37 vasivtallglllgaavlstleidptqqilglDplvvlg 75
                 ++i+ ++++l++ ++v++  e +  ++ilgl p  +l+
  CTQ27504.1 31 TIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILS 69
                567888888888889999999999999999998877665 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.1e-05
       Pam17  23 effklrkkrrrielvasivtallglllga....avlstleidp.tqqilglDp...lvvlglatlasgalGwllGpvlgsa 95 
                  f ++r +++++ l+ s+++a++++++ +    +v+++ + +  + q  gl p   + v+ +  +++g++G llG vlg  
  CTQ27504.1 256 LFQAVRMEKNMMGLLLSLIVAVAAFNIITslgmMVMEK-QGEVaILQTQGLTPrqiMAVFMVQGASAGIVGALLGAVLGAL 335
                 4999****************999987654444344444.3332344444555522167777778889999*****999975 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.4   1.4e-05     0.041       1      29 [.     324     355 ..     324     356 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.4e-05
  Gly-zipper_Omp   1 iGaaiGAaaGaliGg..avggrgtGali.GAa 29 
                     +Ga++GA++Gal+++  ++  + +Ga+  GAa
      CTQ27504.1 324 VGALLGAVLGALLASqlNNLMPIIGAFLdGAA 355
                     8**************54344678999885554 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.8   1.1e+04      24      31 ..     182     189 ..     181     191 .. 0.68
   2 ?   11.5   4.2   7.1e-05      0.21      24      39 ..     323     338 ..     316     355 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.8
  Rick_17kDa_Anti  24 vlGavvGA 31 
                      +l++v+G 
       CTQ27504.1 182 RLFTVIGT 189
                      57788885 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.1e-05
  Rick_17kDa_Anti  24 vlGavvGAaaGavaGn 39 
                      ++Ga++GA++Ga++++
       CTQ27504.1 323 IVGALLGAVLGALLAS 338
                      4444444444444444 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00041       1.2       7      34 ..      23      50 ..      18      59 .. 0.90
   2 ?    1.5   0.1      0.13   3.8e+02      16      43 ..     269     296 ..     259     304 .. 0.81
   3 ?   -2.1   0.4       1.7   4.9e+03      15      32 ..     365     378 ..     363     386 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00041
  Sigma_reg_N  7 akrksilrivlislivlllifvilvvtl 34
                 +++ s+l+++ i+l+v+ l++v++v+++
   CTQ27504.1 23 GRFVSWLSTIGITLGVMALVTVLSVMNG 50
                 7999********************9986 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.13
  Sigma_reg_N  16 vlislivlllifvilvvtllylaekegn 43 
                   l+sliv+++ f i+ +++ +++ek+g+
   CTQ27504.1 269 LLLSLIVAVAAFNIITSLGMMVMEKQGE 296
                  6899999999999998888888888876 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.7
  Sigma_reg_N  15 ivlislivlllifvilvv 32 
                  +++i+l++++l     ++
   CTQ27504.1 365 VIVIALVAMVLA----LL 378
                  444444443333....33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3151.63
//
Query:       CTQ27505.1  [L=233]
Description: outer membrane-specific lipoprotein transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-35  122.3   0.0    2.8e-35  121.8   0.0    1.2  1  ABC_tran      ABC transporter
    1.4e-06   27.9   0.4      5e-05   22.8   0.4    2.1  1  SMC_N         RecF/RecN/SMC N terminal domain
    2.5e-06   27.5   0.6       0.05   13.4   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    2.2e-05   24.9   2.3    8.1e-05   23.1   2.3    1.8  1  AAA_16        AAA ATPase domain
     0.0001   22.0   0.4    0.00018   21.2   0.4    1.4  1  AAA_29        P-loop containing region of AAA domain
     0.0016   18.6   1.2      0.012   15.8   1.2    2.0  1  AAA_33        AAA domain
     0.0047   16.8   0.1     0.0078   16.1   0.1    1.3  1  RsgA_GTPase   RsgA GTPase
     0.0062   16.7   0.1       0.15   12.3   0.1    2.4  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
  ------ inclusion threshold ------
      0.017   14.9   0.4       0.27   10.9   0.0    2.1  2  AAA_30        AAA domain
      0.019   15.2   0.9        0.1   12.9   0.2    2.1  2  AAA_22        AAA domain
      0.046   13.1   0.1      0.078   12.3   0.1    1.3  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
       0.12   12.5   0.1       0.28   11.3   0.1    1.7  1  MMR_HSR1      50S ribosome-binding GTPase
       0.16   11.1   0.4       0.47    9.6   0.1    1.8  2  NB-ARC        NB-ARC domain
       0.17   12.2   0.3       0.34   11.1   0.3    1.5  1  AAA_28        AAA domain
       0.18   11.9   0.8       0.35   10.9   0.8    1.4  1  DUF87         Helicase HerA, central domain
       0.19   12.3   2.3       0.52   10.9   2.3    2.0  1  AAA_18        AAA domain
        0.2   12.1   0.1       0.34   11.4   0.1    1.3  1  AAA_23        AAA domain
       0.32   10.9   1.5       0.49   10.3   0.5    1.7  2  NACHT         NACHT domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.0   2.8e-38   2.8e-35       1     136 [.      25     173 ..      25     174 .. 0.96

  Alignments for each domain:
  == domain 1  score: 121.8 bits;  conditional E-value: 2.8e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren.............esd 82 
                 l+nvs+++ ege++aivG +G+GKStLl ll gl +pt+G++ + g+++++     +    ++e+g++ q ++l p+ ++ en             + +
  CTQ27505.1  25 LHNVSFSIGEGEMMAIVGTSGSGKSTLLHLLGGLDTPTSGDVIFSGQPMSKlstaARADLRNRELGFIYQFHHLLPDFSALENvamplligkkkpaDIE 123
                 79*************************************************999888888899******************************999999 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++++l+ +gl++  +++     s+LSgG++qrva+aral++kp+l+l+DEpt
  CTQ27505.1 124 RQAKAMLQAVGLEHRSHHRP----SELSGGERQRVAIARALVNKPRLVLADEPT 173
                 99************777777....*****************************9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.4   5.1e-08     5e-05      25     211 ..      36     218 ..      26     224 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.1e-08
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H..H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk..k 121
                 ++ aivG  GSGKs ll    ++LG      l   +  d+i++  +  s  +      ++n +  +  + +++    ++ ++      i +k+     +
  CTQ27505.1  36 EMMAIVGTSGSGKSTLL----HLLG-----GLDTPTSGDVIFS-GQPMSKLSTAARADLRNRELGFIYQFHHLLPDFSALENVAMPLLIGKKKPADieR 124
                 6789*********9875....7789.....5778999999998.3333333333333345555555555555555556666666555555444333235 PP

                 HHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHC..TTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeks..knaQfivislreemlekadklvgv 211
                 + + +l+ +g++        +LSgGe++ va+a       v++  l+l De   +LD++n   + +ll e +  +++ f+v++++ ++ +++++ + +
  CTQ27505.1 125 QAKAMLQAVGLEHRshhrpsELSGGERQRVAIARA----LVNKPRLVLADEPTGNLDARNADSIFQLLGELNvaQRTAFLVVTHDLQLAKRMSRQLEM 218
                 55556666666554455555********9998754....456667999********************9765216688*********99999887766 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.3   0.00011      0.11       2      22 ..      38      58 ..      37      91 .. 0.81
   2 !   13.4   0.0     5e-05      0.05     235     301 ..     144     208 ..     118     210 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                ++++G  gsGKS+LL +l +l
  CTQ27505.1 38 MAIVGTSGSGKSTLLHLLGGL 58
                79****************888 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 5e-05
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell...kelsrngaQviltTHSpll 301
                 +elS G ++  a++ al   +   +l+l DEp  +L+ +   ++++ll   +   + ++ ++++TH+  l
  CTQ27505.1 144 SELSGGERQRVAIARALVNKP---RLVLADEPTGNLDARNADSIFQLLgelN--VAQRTAFLVVTHDLQL 208
                 567888888867777777655...************************9544..4456********9766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   2.3   8.2e-08   8.1e-05      20     154 ..      31     216 ..      19     226 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 8.2e-08
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekd...ggiflrgkcdqlesa................ipysalaqalareellrqlldeaesaeleawre 99 
                 + g++e++ ++G sG+GKs+l+  l   l +    ++if  +   +l++a                 ++++  +al++   +  l  +++ a+ e+ ++
  CTQ27505.1  31 SIGEGEMMAIVGTSGSGKSTLLHLLG-GLDTPtsgDVIFSGQPMSKLSTAaradlrnrelgfiyqfHHLLPDFSALEN-VAMPLLIGKKKPADIERQAK 127
                 56888*****************8877.455555652555333333331111222222233333333233566666633.77777777777777777777 PP

      AAA_16 100 kleeala.....................................avpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslql 154
                 + ++a++                                     ++++l++  a ++++ll +l   ++r    +++v  dlq a+ +s+ql
  CTQ27505.1 128 AMLQAVGlehrshhrpselsggerqrvaiaralvnkprlvladePTGNLDARNADSIFQLLGELN-VAQR--TAFLVVTHDLQLAKRMSRQL 216
                 77777779999999999999999999999999998888887777777777777788888877777.3333..349999999**********9 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.4   1.8e-07   0.00018      13      39 ..      26      52 ..      20      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.8e-07
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                ++ +++i + +++ ++G+sGsGKSTll
  CTQ27505.1 26 HNVSFSIGEGEMMAIVGTSGSGKSTLL 52
                55666777555***************8 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   1.2   1.2e-05     0.012       2     118 ..      38     214 ..      37     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdt.................................................................lrr 35 
                 + +vG +GsGKstl++ l        l+++t                                                                 ++ 
  CTQ27505.1  38 MAIVGTSGSGKSTLLHLLG------GLDTPTsgdvifsgqpmsklstaaradlrnrelgfiyqfhhllpdfsalenvamplligkkkpadierqakAML 130
                 5689***********9884......23333333334444467888888899999999999999999999999999999999999999999877755444 PP

      AAA_33  36 rlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildat..nlsrrerarflklarrlgvpvrivvvetdeetlkeRlakR 118
                 + +g + +s  ++++++   +q++ ++ar    + r v++d +  nl++r+ + +++l+ +l+v+ r  ++ +  ++  ++   R
  CTQ27505.1 131 QAVGLEHRSHHRPSELSGGERQRV-AIARALVNKPRLVLADEPtgNLDARNADSIFQLLGELNVAQRTAFLVVTHDLQLAKRMSR 214
                 444466666668899999999999.9999999999*****99888999****************998877777666544444444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   7.9e-06    0.0078      90     121 ..      25      57 ..       8      71 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.9e-06
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallp 121
                  l++++  + + +++++vG SG GKStL+  l +
   CTQ27505.1  25 LHNVSFSIGEgEMMAIVGTSGSGKSTLLHLLGG 57 
                  5566666665599***************98865 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   0.00015      0.15      25      88 ..     138     188 ..     121     190 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
     SbcCD_C  25 elsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                 + +++ ++lSGGe+q    +a+a al           +++rlv+ DE  ++lD+++++++++ll
  CTQ27505.1 138 RSHHRPSELSGGERQR---VAIARAL----------VNKPRLVLADEPTGNLDARNADSIFQLL 188
                 5566667788888843...3444222..........2469********************9997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00027      0.27      18      48 ..      35      65 ..      21      91 .. 0.80
   2 ?    2.2   0.1      0.13   1.3e+02      56     114 ..     123     190 ..     118     219 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00027
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggr 48
                  +++++G  G+GK+t+l  l  + +   g+
  CTQ27505.1 35 GEMMAIVGTSGSGKSTLLHLLGGLDTPTSGD 65
                4599**************9887776666444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.13
      AAA_30  56 gkaAkvLaeelgieastiakllkrlk........grarlepgtllivDE.agmvdtkqlaallkaaek 114
                 +++Ak++ +++g+e ++ ++  +  +        +ra +++ +l++ DE +g +d+++++++++ + +
  CTQ27505.1 123 ERQAKAMLQAVGLEHRSHHRPSELSGgerqrvaiARALVNKPRLVLADEpTGNLDARNADSIFQLLGE 190
                 67888888888888888888776666888889887677788899999997788999999998887655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2    0.0001       0.1       6      25 ..      36      55 ..      32      72 .. 0.89
   2 ?    0.6   0.0      0.63   6.3e+02      58      99 ..     127     171 ..     113     214 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.0001
      AAA_22  6 gilvvtGesGtGKTtllrrl 25
                 +++++G sG+GK+tll  l
  CTQ27505.1 36 EMMAIVGTSGSGKSTLLHLL 55
                689*************9876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.63
      AAA_22  58 rellralglelkaerlsseell.ealeqalrarav...ielliiDE 99 
                 +++l+a+gle+ +  ++ +el     ++ + ara    ++l++ DE
  CTQ27505.1 127 KAMLQAVGLEHRS-HHRPSELSgGERQRVAIARALvnkPRLVLADE 171
                 5667777777777.55555554333333333333345555777777 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   7.8e-05     0.078      41      58 ..      37      54 ..      16      55 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.8e-05
                  SEEEE--TTSSHHHHHHH CS
  FtsK_SpoIIIE 41 hllvaGatgsGKStalnt 58
                   + ++G++gsGKSt l+ 
    CTQ27505.1 37 MMAIVGTSGSGKSTLLHL 54
                  578************986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00028      0.28       2      20 ..      38      56 ..      37      81 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00028
                EEEEESTTSSHHHHHHHHH CS
    MMR_HSR1  2 vaivGrpNvGKStLinalt 20
                +aivG + +GKStL+  l 
  CTQ27505.1 38 MAIVGTSGSGKSTLLHLLG 56
                69************98775 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00047      0.47      19      37 ..      36      52 ..      21      55 .. 0.86
   2 ?   -1.1   0.0      0.85   8.4e+02      71     110 ..     128     170 ..     117     222 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00047
                CSEEEEEEESTTSSHHHHH CS
      NB-ARC 19 qslvvalvGmgGvGKttla 37
                +  ++a+vG  G+GK+tl+
  CTQ27505.1 36 E--MMAIVGTSGSGKSTLL 52
                3..8*************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.85
                 XXHHHHHCCCTTSSSS-STTS...HHHHHHHHCCCTTEEEEEE CS
      NB-ARC  71 tilkeLslseddleekeeves...lkrklvrlLltkrfllvlD 110
                 ++l+ ++l++   +  +e          + r+L +k  l++ D
  CTQ27505.1 128 AMLQAVGLEHRSHHRPSELSGgerQRVAIARALVNKPRLVLAD 170
                 5556665554444444443335546667888888886666655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00034      0.34       3      25 ..      39      61 ..      37      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
      AAA_28  3 vitGgestGKTtlleaLaargyp 25
                +i+G++++GK+tll  L   ++p
  CTQ27505.1 39 AIVGTSGSGKSTLLHLLGGLDTP 61
                89************999766555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.8   0.00035      0.35      26      43 ..      38      55 ..      35      56 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00035
       DUF87 26 lAilgsTGsGKSntvavL 43
                +Ai+g++GsGKS++  +L
  CTQ27505.1 38 MAIVGTSGSGKSTLLHLL 55
                8************99876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.3   0.00052      0.52       3      19 ..      40      56 ..      38     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00052
      AAA_18  3 ltGtpGvGKttlakeLs 19
                + Gt+G+GK+tl + L 
  CTQ27505.1 40 IVGTSGSGKSTLLHLLG 56
                89**********99994 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00034      0.34      18      37 ..      34      53 ..      22      56 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00034
      AAA_23 18 skgltlItGpNGaGKTTild 37
                +  + +I+G  G+GK+T+l 
  CTQ27505.1 34 EGEMMAIVGTSGSGKSTLLH 53
                446889************95 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.5   0.00049      0.49       2      18 ..      37      53 ..      36      58 .. 0.89
   2 ?   -1.6   0.0       2.2   2.2e+03      92     123 ..     171     200 ..     116     220 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00049
                CEEEEC-TTTCHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlq 18
                ++++ G +GsGK+tLl+
  CTQ27505.1 37 MMAIVGTSGSGKSTLLH 53
                689************98 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.2
                 T-SS-TCH.........HHHHHCTTTTT--EE CS
       NACHT  92 elvtdlgqkekqpvrtlLselirkkllpeasl 123
                 e    l++ ++ ++ +lL+el  +   ++a l
  CTQ27505.1 171 EPTGNLDARNADSIFQLLGELNVA--QRTAFL 200
                 444444444444444444444333..333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1660.06
//
Query:       CTQ27506.1  [L=414]
Description: outer membrane-specific lipoprotein transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-15   57.5   1.0    2.3e-15   57.5   1.0    2.6  3  MacB_PCD  MacB-like periplasmic core domain
    2.2e-12   47.3  13.1    7.4e-12   45.6   2.4    3.2  3  FtsX      FtsX-like permease family
     0.0027   17.8  11.1        0.8    9.7   0.2    3.2  2  Sensor    Putative sensor


Domain annotation for each model (and alignments):
>> MacB_PCD  MacB-like periplasmic core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   1.0   3.8e-19   2.3e-15       1     190 [.      27     239 ..      27     244 .. 0.75
   2 ?   -2.7   0.6         1   6.2e+03       8      26 ..     278     296 ..     275     303 .. 0.80
   3 !    5.8   0.1    0.0027        16       3      43 ..     330     369 ..     328     406 .. 0.82

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 3.8e-19
    MacB_PCD   1 slltvLGiaiGvaaviaivslgeglqasvlsqisdl.gnlvtvtpgkgsgeslsdpdvealrrevp.veavapvv....tvrgggsgeeevtvvgvdp. 92 
                 s+++ +Gia+Gva++i+ +s ++g+ + ++ ++ +       + p +  ++  +++++ a  ++v  ++a+ap++    +v +g++  ++++v gvdp 
  CTQ27506.1  27 SVISTIGIALGVAVLIVGLSAMNGFERELNNRVLAVvP-HGEIEPVN--QPWNNWQEALAKVQKVKgIVAAAPYInftgLVESGSN-MRAIQVKGVDPq 121
                 7899**********************999999774432.24565553..222223322111235667999***9988875555553.5669****9975 PP

    MacB_PCD  93 dyfkvfglkl.aeGrffteadlrggpnvvvigeelaerlf.pvGdtirl................kpftVvGvledppgsgsalgddavylplttlqrr 173
                 ++ ++  l+  ++     +a +++g+++v++g+++a++l  + Gd + +                +++ V+G+l + +g    l+ +++++p++++q+ 
  CTQ27506.1 122 QESQLSALPTfVQN--NAWAGFKAGEQQVILGKGVADALHvKQGDWVSImipnadadhqllqpkrVRLHVTGIL-QLSG---QLDHSFAMIPMQDAQQY 214
                 66667777444887..67788999**************99*99******************99888899****9.5324...557778****9988432 PP

    MacB_PCD 174 s........itvrlkdgadleaaaa 190
                          i+++++d   ++++ +
  CTQ27506.1 215 LemggsvtgIAIKVTDVFHANKLVR 239
                 347777788****999888877765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1
    MacB_PCD   8 iaiGvaaviaivslgeglq 26 
                 ++iGva++ ++ +l+ +++
  CTQ27506.1 278 LVIGVACFNIVSTLVMAVK 296
                 89****9999988887666 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0027
    MacB_PCD   3 ltvLGiaiGvaaviaivslgeglqasvlsqisdlgnlvtvt 43 
                  +++G++iGv +   ++s+++g+   + + +  +g+++ + 
  CTQ27506.1 330 GSLFGVVIGVICALNLTSIINGIEYLIGHKFL-SGDIYFID 369
                 5789*******************988877777.67777765 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.3    0.0019        11      63      89 ..      22      48 ..       2      55 .. 0.76
   2 ?    1.4   0.2     0.077   4.6e+02      49      82 ..     253     283 ..     220     296 .. 0.62
   3 !   45.6   2.4   1.2e-15   7.4e-12       4      96 .]     302     407 ..     299     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0019
        FtsX 63 sidlitvliiivlllllallagllsis 89
                +++li+v+ +i+++l +a+l++ ls+ 
  CTQ27506.1 22 MVSLISVISTIGIALGVAVLIVGLSAM 48
                577888888888888888888777765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.077
        FtsX  49 dvllssvfsselkisidlitvliiivlllllall 82 
                 ++++++   + +   i+ i  +  ++++l++ ++
  CTQ27506.1 253 SWIGTY---GYMYRDIQMIRAIMYLAMVLVIGVA 283
                 455555...3333334444433333333333332 PP

  == domain 3  score: 45.6 bits;  conditional E-value: 1.2e-15
        FtsX   4 igilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllss.............vfsselkisidlitvliiivlllllallagllsis 89 
                 i++lr+lG+k++ ++ ++++ +ll + v++++G+++g++ a  l + ++ +             +f + l+  + +++v+ ++v +lll lla++++++
  CTQ27506.1 302 IAVLRTLGAKDGLIRAIFVWYGLLAGSVGSLFGVVIGVICALNLTSIINGIeylighkflsgdiYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPAR 400
                 99**********************************9999999888888886666666555554445******************************** PP

        FtsX  90 kilkkep 96 
                 ++++++p
  CTQ27506.1 401 RASRIDP 407
                 ****997 PP

>> Sensor  Putative sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.2   0.00013       0.8      20      82 ..      21      82 ..      18      92 .. 0.67
   2 !    5.6   6.1    0.0025        15      72     125 ..     252     342 ..     234     410 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00013
      Sensor 20 lslglgllvllvGlplLalallla.rglaaveRrrarlllglpvprphrapep.pgllarlrall 82
                 +++l+ ++ ++G++l +++l ++  +++ +eR++ +++l + vp  h + ep + +++++ ++l
  CTQ27506.1 21 GMVSLISVISTIGIALGVAVLIVGlSAMNGFERELNNRVLAV-VP--HGEIEPvNQPWNNWQEAL 82
                578899999999999877776555157889*********984.44..322223344455444444 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0025
      Sensor  72 pgllarlrallrdpatwrdllylllhfplglvlfvvavvllalalalltaPlw......................................t 125
                 ++++ + + + rd + +r+++yl++ +++g+++f ++ +l++ a+   +  ++                                      +
  CTQ27506.1 252 KSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVM-AVKDKSGDIAvlrtlgakdgliraifvwygllagsvgslfgvvigvicA 342
                 78889999999999***************9888877776633.3332222221123455555555555554444444333333333333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3168.84
//
Query:       CTQ27507.1  [L=303]
Description: N-acetyl-D-glucosamine kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-66  223.8   0.0    3.5e-66  223.7   0.0    1.0  1  ROK          ROK family
    2.9e-09   36.4   0.0      2e-08   33.6   0.0    1.9  1  Glucokinase  Glucokinase


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.7   0.0   3.9e-70   3.5e-66       1     291 [.       2     300 ..       2     303 .] 0.97

  Alignments for each domain:
  == domain 1  score: 223.7 bits;  conditional E-value: 3.9e-70
                 EEEEEE-SSEEEEEEEETTS-EEEEEEEEEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHHHTS- CS
         ROK   1 tigidiGgtkialalvdeegeilarekvetptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitwenfdlvekleerlnvp 99 
                 ++g diGg kial ++++e+    +++v tp++ +e+ l +a+++lv ea++++d+ ++vgig+pG+ +  +g+++ +  + +   +l ++l++rl++ 
  CTQ27507.1   2 YYGFDIGGSKIALGVFNQERRLQWEKRVATPKSSYEDFL-QAVEALVREADERFDQQGSVGIGIPGMPETADGTLYAANVPAASGRPLRADLSARLGRD 99 
                 6899***********************************.****************************888888887777888**************** PP

                 EEEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-..........TTS-B-TTS-BSBHHHCCSHHHHHHCH CS
         ROK 100 vevenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqld..........pegekcgCGnqgClEtlasgralekra 188
                 v+++nD+n++al+Ea++ +  ++  v+ +++gtGvG+G ++ngk itG++ + ge+GHi+l           +   +cgCG+ gC+E+++sgr+++  +
  CTQ27507.1 100 VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVLNGKSITGHSYITGEFGHIRLPvdalevvgrdFPLLRCGCGQLGCIENYLSGRGFAWLY 198
                 *********************************************************************98855588********************** PP

                 TC.CGTTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHHHHHHHHHHHCCTTTTCCCT-EEEE-S-STTHHHHH CS
         ROK 189 qq.kgekleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadklleairklvkkylnkklevpvveivaaklgdkagllG 286
                 ++  ++ l+  ei+ + ++ d+ a++ ver+ + la  + ++++++dp+  vlgGg+s++ ++ e + + + ++l+  ++vp   i  a +gd  g++G
  CTQ27507.1 199 EHfYQQPLSSPEIVAQWQQHDPRAQAHVERYLDLLAVCLGNILTIVDPDLLVLGGGLSNFTAISEGLAQRLPRHLLPVARVPR--IERARHGDAGGMRG 295
                 **88999***************************************************************************9..9************* PP

                 HHHHH CS
         ROK 287 aaaLa 291
                 aa L 
  CTQ27507.1 296 AAFLH 300
                 **996 PP

>> Glucokinase  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   2.3e-12     2e-08       4     264 ..       6     255 ..       4     265 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 2.3e-12
  Glucokinase   4 DiGGTkarlalveaeeeelelleiekyasadyasleealqaflaeaeaevkrpksavlAvAg..pvegdeveltNlpWviseeelakelgle...ave 96 
                  DiGG k  l ++++e++  + ++    + + y+++ +a++a ++ea+++ ++  s+ +++ g     ++++  +N+p + s + l+++l+ +   +v+
   CTQ27507.1   6 DIGGSKIALGVFNQERRL-QWEKRVATPKSSYEDFLQAVEALVREADERFDQQGSVGIGIPGmpETADGTLYAANVP-AASGRPLRADLSARlgrDVR 101
                  9************99988.88888889999********************************755677888889998.67889999999887666899 PP

  Glucokinase  97 liNDfeavayaiplleaedlvqlgggkkdaeapiavlGaGTGLGvallipekerrvvlasEGGhvdfapeseeev.elleilrkklgrv.saErvlSG 192
                  l ND ++ a+  +   +++++q       +  + ++lG G G G  l  ++ +++  + +E Gh+ +++   e v + +  lr   g++  +E+ lSG
   CTQ27507.1 102 LDNDANCFAL--SEAWDDEFTQY------PLVMGLILGTGVGGGLVLNGKSITGHSYITGEFGHIRLPVDALEVVgRDFPLLRCGCGQLgCIENYLSG 191
                  9999666655..55556665543......3445578877766666666666778889**********9876554424577788888888358****** PP

  Glucokinase 193 pGLvnlyealaaadkleeellepaeiteaalegedplarealelFlailGsvagdlaLkllargGvyiaGGi 264
                  +G + lye   ++      l++p+ ++++   ++dp+a++ +e +l++l+   g++ L+++  + + ++GG+
   CTQ27507.1 192 RGFAWLYEHFYQQP-----LSSPEIVAQWQ--QHDPRAQAHVERYLDLLAVCLGNI-LTIVDPDLLVLGGGL 255
                  ********998887.....67777777776..689*******************96.666666667777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2296.13
//
Query:       CTQ27508.1  [L=276]
Description: deacetylase of acetyl-CoA synthetase, NAD-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-50  171.0   0.0    3.1e-50  170.5   0.0    1.2  1  SIR2             Sir2 family
      0.007   16.4   0.1      0.051   13.6   0.1    2.1  2  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom
  ------ inclusion threshold ------
      0.088   12.5   0.0       0.23   11.2   0.0    1.7  2  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.5   0.0   5.2e-54   3.1e-50       1     177 []      49     222 ..      49     222 .. 0.96

  Alignments for each domain:
  == domain 1  score: 170.5 bits;  conditional E-value: 5.2e-54
                 -GGGGGGGT---SSSTTSHHHHSCHHHHSSHHHHHHHHHHHHHHHHHHHHHHHCC.TSS--HHHHHHHHHHHTT.CEEEEEES-SSSHHHHTT-SSEEE CS
        SIR2   1 GAGiStesGipdfRskeGlyaklakeelaspealfskkllveevfyniarellae.eaepnaaHkalkklekkg.kllrliTQNiDgLekkaGskkvve 97 
                 GAGiS+esGi++fR+++Gl+++++ e++a+pe + +++ lv++ fyn++r++l+  e++pnaaH al+ le+   + + l+TQNiD+L+++aG+++v++
  CTQ27508.1  49 GAGISAESGIKTFRAADGLWEEHRVEDVATPEGFARDPALVQA-FYNARRRQLQSpEIKPNAAHLALARLEDLLgDHFLLVTQNIDNLHERAGNRRVIH 146
                 9******************************************.*****9999999***************97538999******************** PP

                 TTEEEEEEEETTTSBEEECCGGHCHHHCCTT.B-TTTCCBEEEEE--CTSB-SHHHHHHHHHHHH-SEEEEES--STSTT CS
        SIR2  98 lHGslakakcvkcekkldkeelqeeieaekvpecekcgkllkpdvvfFGealpdklkkliekveeadlllviGtSlkVap 177
                 +HG+l+k++c+ +++ l++   + +++ae++++c+++ ++l+p+vv+FGe+    ++++++++ +ad++++iGtS +V+p
  CTQ27508.1 147 MHGELLKVRCSWSGQVLEW---TGDVTAEDKCHCCQFPAALRPHVVWFGEMPL-GMDEIYSALADADIFIAIGTSGHVYP 222
                 ***********99998877...89999999********************988.9***********************98 PP

>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.12     7e+02      74     107 ..      58      91 ..      13      97 .. 0.76
   2 !   13.6   0.1   8.5e-06     0.051       2      26 ..     210     234 ..     210     265 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.12
                      HHHHHHHHHHHHHHHHCCCCCCCCCCCHCCCCCH CS
  Glyco_transf_28  74 lkavvkakkilkeakpdavvgtggyvslpaviaa 107
                      +k++++a  +++e++ + v++  g+++ pa++ a
       CTQ27508.1  58 IKTFRAADGLWEEHRVEDVATPEGFARDPALVQA 91 
                      4667777778888888888888888888887766 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 8.5e-06
                      EEEE-SSHHHHHHHHHHHHHHHCTT CS
  Glyco_transf_28   2 vllggGTgGhvfPalAlakeLkkeg 26 
                      +++++GT Ghv+Pa  +++e +  g
       CTQ27508.1 210 IFIAIGTSGHVYPAAGFVHEARLHG 234
                      5799************999877665 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.67     4e+03      13      31 ..      43      61 ..      40      66 .. 0.75
   2 ?   11.2   0.0   3.9e-05      0.23      61     121 ..     192     252 ..     185     270 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.67
                  SEEEEE-CHHCHTTGHHHH CS
  TPP_enzyme_M 13 rpvilvGggvarsgaseel 31
                  r+v+l G g++ +   + +
    CTQ27508.1 43 RVVVLTGAGISAESGIKTF 61
                  7899999999977666555 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3.9e-05
                   EESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTTTTTTT-.EEEEEESSCCCCTTCC- CS
  TPP_enzyme_M  61 gmlglhgskaanealeeaDlvlalGarfddirttgsepefapea.kiihididpaeigknyq 121
                   g + l g ++ + al++aD+ +a+G+  + +  +g  +e   ++   ++++ +p+++g  + 
    CTQ27508.1 192 GEMPL-GMDEIYSALADADIFIAIGTSGHVYPAAGFVHEARLHGaHTVELNLEPSQVGSEFA 252
                   54454.58999****************99988888666444455589*******99998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2174.51
//
Query:       CTQ27509.1  [L=114]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0044   17.2   0.6       0.01   16.0   0.6    1.6  1  ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transpor


Domain annotation for each model (and alignments):
>> ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.6   5.6e-07      0.01       9      50 ..      10      51 ..       7      54 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.6e-07
  ATPase_gene1  9 ielvapillggllGywLDkkfgtspwfliiglllGlaaGfyn 50
                  i l+a+i++g++  + L  +  + p++++++l+lG ++++ +
    CTQ27509.1 10 IMLIAAIIVGVWSQRALPLHADSRPILFLLCLFLGTGSALCL 51
                  7899999999999999999******************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 863.79
//
Query:       CTQ27510.1  [L=320]
Description: putative transcriptional regulator, sorC family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-79  264.1   0.4    1.4e-78  263.6   0.4    1.2  1  Sugar-bind       Putative sugar-binding domain
    1.4e-07   31.5   1.1    9.2e-06   25.7   0.3    2.6  2  HTH_28           Helix-turn-helix domain
    1.1e-06   28.0   0.4    3.5e-06   26.4   0.5    1.8  1  Sigma70_r4       Sigma-70, region 4
    8.3e-05   22.3   0.1    8.3e-05   22.3   0.1    2.7  3  HTH_23           Homeodomain-like domain
    9.2e-05   21.9   0.0    0.00018   21.0   0.0    1.5  1  HTH_24           Winged helix-turn-helix DNA-binding
    9.3e-05   22.3   0.0    0.00033   20.6   0.0    1.9  1  HTH_Crp_2        Crp-like helix-turn-helix domain
     0.0011   18.8   0.3      0.006   16.5   0.1    2.3  2  MarR_2           MarR family
     0.0017   18.7   0.4     0.0044   17.3   0.1    1.9  2  Rrf2             Transcriptional regulator
     0.0019   17.9   0.2     0.0044   16.7   0.2    1.7  1  Sigma70_r4_2     Sigma-70, region 4
     0.0097   15.8   0.0      0.023   14.7   0.0    1.6  1  HTH_36           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.015   15.3   0.2      0.045   13.8   0.0    1.8  2  HTH_29           Winged helix-turn helix
      0.027   14.4   0.1      0.063   13.2   0.1    1.6  1  TrmB             Sugar-specific transcriptional regulator Trm
      0.069   13.7   0.1        0.5   10.9   0.0    2.2  2  DUF134           Protein of unknown function  DUF134
        0.1   12.7   0.0       0.28   11.3   0.0    1.7  1  Sigma70_r3       Sigma-70 region 3
       0.13   11.9   0.1       0.85    9.3   0.1    2.3  2  CENP-B_N         CENP-B N-terminal DNA-binding domain
       0.14   12.1   0.2       0.54   10.2   0.1    1.9  2  Phage_antitermQ  Phage antitermination protein Q


Domain annotation for each model (and alignments):
>> Sugar-bind  Putative sugar-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.6   0.4   1.2e-81   1.4e-78       4     255 .]      61     315 ..      58     315 .. 0.98

  Alignments for each domain:
  == domain 1  score: 263.6 bits;  conditional E-value: 1.2e-81
                 CCHHHHHHHHHHHHT-SEEEEESSTSTTCHHHHHHHHHHHHHHHHH--TTEEEEE-SSHHHHHHHHHTHHCCHTCEEEEESBSECSSCHC.GSHHHHHH CS
  Sugar-bind   4 aelleleerLkekfglkeaivvpddadeedvlealgraaaqllesllkdgdvvgvgwGrtlsavaealtpkslrdvkvvqliGglsekvs.aevnevva 101
                 + ++++e++++++fg+k+a ++ d+ de++++++++++++++l  +lk++++v+vg+Gr+++ava+++   + r++++++ iGg++++ + ++++++ +
  CTQ27510.1  61 VFSSQIEQQFISHFGIKRALIALDHHDEDEQRQQVAALVSNYLAGVLKNDMTVTVGQGRNVAAVANHVGVFPERHCRFICGIGGTKRDNQlIDADHISR 159
                 56889********************************************************************************************** PP

                 HHHHHCTSEEE--SSBSB-SSHHHHHHHHTSHHHHHHHHHHHT-SEEEEE-EEHCCCCHHHCCTTS-HHHHHHH.HHTTEEEEETTE.EEETTS-BCCH CS
  Sugar-bind 102 rlAqklggeyellpaPavlssaelreallaersikevlelakkadvalvGiGsaseeaklvkrgflteeelael.reegaVGeilgr.ffDaeGevvet 198
                 +lA+k++g +e+l+aPa+++++elr a++++r ik +le+a+kadva++G+G+++e++ +v+ g++t++e+a+  +e+g+VG+++g+ ff+ +G++v+t
  CTQ27510.1 160 NLARKFNGFSETLYAPAYVETPELRAAFMQNRLIKATLEQASKADVAIIGLGDMNENSFMVQLGWFTPQEIATArQEQGVVGDLAGYsFFNIQGKPVDT 258
                 *************************************************************************98899********************* PP

                 CHCCCBSB--HHHHTTSSEEEEE--SGGGHHHHHHHHHTTS-SEEEEEHHHHHHHHC CS
  Sugar-bind 199 elnerviglsledlrkipkviavAggesKaeAilaaLrgglinvLitdestAkalLa 255
                  +n+rviglsle+lr+ip+via+A +++Ka+Ail+aLr+g+i+vL t++s+A+++++
  CTQ27510.1 259 VMNDRVIGLSLEQLRAIPCVIAIASESTKATAILGALRTGVIDVLATSASNARSVIN 315
                 *****************************************************9975 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.3   8.2e-09   9.2e-06       5      41 ..      15      51 ..      13      54 .. 0.94
   2 ?    3.6   0.0     0.064        71      11      30 ..     117     137 ..     115     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 8.2e-09
      HTH_28  5 iikllaaGhsvreaArelgisrrtvyrWikryeegGi 41
                ++ ++ +  ++ e+A+++gisr  v r++k+ +++Gi
  CTQ27510.1 15 AVAYYDQEQTQEEIAKRFGISRIKVGRLLKKARQEGI 51
                8999*9999***************************8 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.064
      HTH_28  11 aGhsvreaArelgi.srrtvy 30 
                 +G++v+++A+++g+  +r+++
  CTQ27510.1 117 QGRNVAAVANHVGVfPERHCR 137
                 699**********98778776 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.5   3.1e-09   3.5e-06      14      46 ..      16      48 ..      12      49 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 3.1e-09
                HHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHH CS
  Sigma70_r4 14 elrfgeglTleEIgerlgiSrerVrqiekrAlr 46
                + ++++++T+eEI++r+giSr  V +++k+A++
  CTQ27510.1 16 VAYYDQEQTQEEIAKRFGISRIKVGRLLKKARQ 48
                5789***************************86 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   7.4e-08   8.3e-05      11      46 ..      16      51 ..      13      53 .. 0.87
   2 ?   -0.1   0.1      0.77   8.6e+02       6      25 ..      77      97 ..      75     100 .. 0.67
   3 ?   -2.4   0.1       4.1   4.6e+03      10      24 ..     192     206 ..     182     207 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 7.4e-08
      HTH_23 11 llllaeGlsvreIAreLgvsrrTvyrwlkryreeGl 46
                +  +++ ++++eIA+++g+sr  v r lk+ r+eG+
  CTQ27510.1 16 VAYYDQEQTQEEIAKRFGISRIKVGRLLKKARQEGI 51
                4446679***********************999996 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.77
      HTH_23  6 eRlrillllae.GlsvreIAr 25
                +R++i+l + +    ++++A+
  CTQ27510.1 77 KRALIALDHHDeDEQRQQVAA 97
                678866666654777777776 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.1
      HTH_23  10 illllaeGlsvreIA 24 
                  +++ +e +s++++A
  CTQ27510.1 192 LIKATLEQASKADVA 206
                 466666666666665 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.6e-07   0.00018       5      48 .]       7      53 ..       4      53 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.6e-07
      HTH_24  5 drkILelLqk...nprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                d+++L ++     +   +q e+A+r g+S+  v r lk+  +eG+++
  CTQ27510.1  7 DYALLTEIAVayyDQEQTQEEIAKRFGISRIKVGRLLKKARQEGIVE 53
                55566555556668899****************************96 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0     3e-07   0.00033      23      53 ..      24      54 ..       9      61 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3e-07
                HHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE CS
   HTH_Crp_2 23 tqeelAsmlGltretvsrilseLkreglisr 53
                tqee+A + G++r  v r+l++ ++eg+++ 
  CTQ27510.1 24 TQEEIAKRFGISRIKVGRLLKKARQEGIVEI 54
                9***************************983 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   5.3e-06     0.006      21      53 ..      22      54 ..       9      57 .. 0.88
   2 ?   -1.7   0.0       2.5   2.8e+03       9      23 ..      78      92 ..      75     101 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.3e-06
                EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2 21 dltvgelarrlglsksavsrilkrLvaaGLver 53
                + t+ e+a+r+g+s+  v r+lk++ + G ve 
  CTQ27510.1 22 EQTQEEIAKRFGISRIKVGRLLKKARQEGIVEI 54
                369****************************96 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.5
                HHHHHHHCTTTSEEE CS
      MarR_2  9 rvLaaLgrrpgrdlt 23
                r+L aL ++++ + +
  CTQ27510.1 78 RALIALDHHDEDEQR 92
                789999999986443 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   3.9e-06    0.0044       3      56 ..       2      53 ..       1      56 [. 0.82
   2 ?   -2.8   0.0       7.3   8.2e+03      12      32 ..      78      96 ..      77     104 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.9e-06
                --HHHHHHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        Rrf2  3 lsskteyalhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvk 56
                +++ ++yal   +++a  + ++  + eeia+r++is+  + ++l+k r++g+v+
  CTQ27510.1  2 IEQDSDYALL--TEIAVAYYDQEQTQEEIAKRFGISRIKVGRLLKKARQEGIVE 53
                6778888875..555555555556*****************************8 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.3
                HHHHHHHHSSTCC-B-HHHHH CS
        Rrf2 12 hallyLakeeeeepvsseeia 32
                +al+ L +++e+e  + +++a
  CTQ27510.1 78 RALIALDHHDEDE--QRQQVA 96
                6889999888887..444444 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2     4e-06    0.0044      22      52 ..      18      48 ..      13      49 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4e-06
                  HHTS---HHHHHHHHT--HHHHHHHHHHHHH CS
  Sigma70_r4_2 22 ryleglsykEIAellgisegtVksrlsRArk 52
                  +y ++ +++EIA+++gis   V + l++Ar+
    CTQ27510.1 18 YYDQEQTQEEIAKRFGISRIKVGRLLKKARQ 48
                  677999***********************97 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     2e-05     0.023      20      54 ..      20      51 ..       5      52 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2e-05
      HTH_36 20 knggcfpsqetlakrlglsknTvsraikeLeqlGy 54
                + ++   +qe +akr+g+s+ +v r +k+ +q G+
  CTQ27510.1 20 DQEQ---TQEEIAKRFGISRIKVGRLLKKARQEGI 51
                5555...79**********************9997 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     4e-05     0.045       8      41 ..      19      51 ..      15      59 .. 0.88
   2 ?   -3.4   0.0       9.3     1e+04       4      20 ..      82      97 ..      82      99 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4e-05
      HTH_29  8 laeGvstvsqiAkllglsrrtvyrwlkrfeegGl 41
                +++++ t  +iAk+ g+sr +v r lk  +++G+
  CTQ27510.1 19 YDQEQ-TQEEIAKRFGISRIKVGRLLKKARQEGI 51
                56666.99*************************8 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.3
      HTH_29  4 allllaeGvstvsqiAk 20
                al +++e +   +q+A+
  CTQ27510.1 82 ALDHHDEDEQ-RQQVAA 97
                5778999995.777776 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   5.6e-05     0.063      22      55 ..      22      55 ..      15      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.6e-05
                CCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEE CS
        TrmB 22 patadeiaeelgvprskvYevLrsLedkGlVere 55
                + t +eia++ g++r kv + L++  + G+Ve++
  CTQ27510.1 22 EQTQEEIAKRFGISRIKVGRLLKKARQEGIVEIS 55
                7899****************************97 PP

>> DUF134  Protein of unknown function  DUF134
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00045       0.5      49      76 ..      21      48 ..      10      57 .. 0.85
   2 ?   -0.6   0.0       1.8     2e+03      33      73 ..     265     305 ..     251     318 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00045
      DUF134 49 edlkqeeaaklmGiskatlwrllteark 76
                ++ +qee ak  Gis+  + rll++ar+
  CTQ27510.1 21 QEQTQEEIAKRFGISRIKVGRLLKKARQ 48
                46799*********************97 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.8
      DUF134  33 vaisldeleairlvdyedlkqeeaaklmGiskatlwrllte 73 
                 + +sl++l ai  v     +  +a++++G  ++ +  +l++
  CTQ27510.1 265 IGLSLEQLRAIPCVIAIASESTKATAILGALRTGVIDVLAT 305
                 55888888888888888888899999999888877766644 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00025      0.28      22      52 ..      24      54 ..      18      58 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
                XHHHHHHHHTXXHHHHHHHHHHHXXXEETTX CS
  Sigma70_r3 22 tpeEiAeeLglseekVrevleaarepvSldl 52
                t eEiA++ g+s  kV ++l+ ar+   +++
  CTQ27510.1 24 TQEEIAKRFGISRIKVGRLLKKARQEGIVEI 54
                89*********************99766665 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00076      0.85      17      46 ..      17      46 ..      14      48 .. 0.86
   2 ?   -0.9   0.0       1.2   1.3e+03      26      40 ..     159     173 ..     150     174 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00076
                HHHHCTT-HHHHHHHHT--CCHHHHHHHCH CS
    CENP-B_N 17 qrleegeSkaelarrfnvpestlsdilknK 46
                 ++++ +  +e+a+rf++ +  + + lk+ 
  CTQ27510.1 17 AYYDQEQTQEEIAKRFGISRIKVGRLLKKA 46
                588999999**********99999999875 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.2
                 HHHHHHHT--CCHHH CS
    CENP-B_N  26 aelarrfnvpestls 40 
                 + lar+fn    tl+
  CTQ27510.1 159 RNLARKFNGFSETLY 173
                 569****97777765 PP

>> Phage_antitermQ  Phage antitermination protein Q
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00048      0.54      69     104 ..      13      48 ..       4      58 .. 0.87
   2 ?   -1.6   0.0       2.2   2.4e+03      64      84 ..      91     111 ..      75     120 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00048
  Phage_antitermQ  69 ellvdyYvfgvskraiarklkisekevrkklqkaeg 104
                      e+ v+yY  ++++ +ia++++is+ +v++ l+ka++
       CTQ27510.1  13 EIAVAYYDQEQTQEEIAKRFGISRIKVGRLLKKARQ 48 
                      67899***************************9963 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.2
  Phage_antitermQ  64 rpeelellvdyYvfgvskrai 84 
                      + +++  lv+ Y++gv k  +
       CTQ27510.1  91 QRQQVAALVSNYLAGVLKNDM 111
                      467788899999999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2426.49
//
Query:       CTQ27511.1  [L=265]
Description: Triosephosphate isomerase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-79  265.8   0.0    3.5e-79  265.6   0.0    1.0  1  TIM        Triosephosphate isomerase
  ------ inclusion threshold ------
      0.081   12.8   0.1      0.081   12.8   0.1    2.7  3  CLIP1_ZNF  CLIP1 zinc knuckle


Domain annotation for each model (and alignments):
>> TIM  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.6   0.0   3.9e-83   3.5e-79       2     243 .]       6     253 ..       5     253 .. 0.98

  Alignments for each domain:
  == domain 1  score: 265.6 bits;  conditional E-value: 3.9e-83
                 EEEEE-TBTS-HHHHHHHHHHHHHHCHG...CTSEEEEE--GGGHHHHHHHHTTSSEC..EEES--BSSSSBS-TT--BHHHHHHTT-SEEEES-HHHH CS
         TIM   2 liagNwKmnktleeakellkklkaklke...ekvevviappflylekvkklleesklk..lgaqnvsaeksGafTGevsaemlkdlgvkyviiGHsErr 95 
                 ++++ wKmnk l++a +++++l+a+++e    +++ +++ppf+++++v++ l++++l   +gaqn++++++Ga+TGe+sa+ml+++g+++v +GHsErr
  CTQ27511.1   6 WLGTSWKMNKPLSQAMAWCETLAARMPEgchPAIQPFVIPPFTAIQPVSHFLQTHQLPllTGAQNMHEADQGAWTGEISAAMLAETGATLVELGHSERR 104
                 67899****************99999999999*********************99988779************************************** PP

                 HHST--HHHHHHHHHHHHHTT-EEEEEE---HHHHHTT.HHHHHHHHHHHHTTTS-CCCGGCEEEEE--GGGSSS.S----HHHHHHHHHHHHHHHHHH CS
         TIM  96 qlfkEtdelvakKvkaalksglkpilCvGEtleereagkteevvkeqlkeilkkldeealknvviAYePvWAiGt.gktatpeqaqevhaairkelaek 193
                 + f+E+d+ +++Kv++al +gl+p++C+G++ ee++ + ++e v++q+k +l +l+++++ +++iAYePvWAiG+ g++a+p++a  +h+a+r+ l+e+
  CTQ27511.1 105 AAFNESDAAINRKVHSALGHGLRPLICIGDSAEEKRWQVSRESVVRQMKIALYGLSHQQALRTLIAYEPVWAIGEhGTPASPQEAGVIHQALRQALCER 203
                 ***************************************************************************9*********************** PP

                 STHHHHTTSEEEEESS--TTTHHHHHTSTT--EEEESGGGCSHHHHHHHH CS
         TIM 194 vskevaekirilYGGsvnkenakellkqkdidGlLvGgaslkaesFlkii 243
                 +++e+ ++i++lYGGsv+ +na ell+q++i+Gl++G+a+++a+ +++i+
  CTQ27511.1 204 FGHETGTRIPLLYGGSVTLQNAVELLRQQEINGLFIGRAAWDAQGYCDIV 253
                 ***********************************************996 PP

>> CLIP1_ZNF  CLIP1 zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.21   1.9e+03       2       5 ..      22      25 ..      22      26 .. 0.75
   2 ?   12.8   0.1   9.1e-06     0.081       6      14 ..     200     208 ..     199     209 .. 0.90
   3 ?   -1.0   0.7      0.19   1.7e+03       3       6 ..     249     252 ..     249     252 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.21
   CLIP1_ZNF  2 pYCd 5 
                ++C+
  CTQ27511.1 22 AWCE 25
                59*9 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 9.1e-06
   CLIP1_ZNF   6 nCEvFGHdT 14 
                 +CE+FGH+T
  CTQ27511.1 200 LCERFGHET 208
                 8*******9 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.19
   CLIP1_ZNF   3 YCdn 6  
                 YCd+
  CTQ27511.1 249 YCDI 252
                 9**8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2123.93
//
Query:       CTQ27512.1  [L=336]
Description: 4-hydroxythreonine-4-phosphate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-90  303.5   0.1    1.7e-90  303.3   0.1    1.0  1  PdxA      Pyridoxal phosphate biosynthetic protein PdxA
  ------ inclusion threshold ------
      0.036   14.2   0.0      0.095   12.8   0.0    1.7  1  Rapsyn_N  Rapsyn N-terminal myristoylation and linker region


Domain annotation for each model (and alignments):
>> PdxA  Pyridoxal phosphate biosynthetic protein PdxA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.3   0.1   1.9e-94   1.7e-90       2     280 ..      37     325 ..      36     327 .. 0.96

  Alignments for each domain:
  == domain 1  score: 303.3 bits;  conditional E-value: 1.9e-94
                 CSCEEEEE-HHHHHHHHHHH....EEEEEBTTSTCE...TEEEEEE..S......BTTB--HHHHHHHHHHHHHHHHHHHTTSSSEEEE----HHHHHH CS
        PdxA   2 lctpvvvgdkkllekaakkl..elkleeieeaeeas...eelkvldv.e.....veagkvsaesGaaalaslekAvelakegevdalvtaPinKeaika 89 
                  c+p+++g+  ++ +a+k +  ++++++i++ +ea+   ++l+vl++ +     +e+gkv++ +G+++l+++ k +el k+g +d++ taPi+Keaik 
  CTQ27512.1  37 ECKPFLIGSVPIISRAMKIMgcDFAIHKIAHPQEARfswGTLDVLETgDydcdsIEWGKVQKLAGQMSLDYVMKSIELGKAGLIDVVSTAPIHKEAIKL 135
                 69***************77799*******99998889999999988852555567******************************************** PP

                 TT---SSHHHHHHHHTTSSGSEEEEEETTEEEEESS-SS-GGGHHHH--HHHHHHHHHHHHHHHHHTTT.SSSEEEEE-SSGGGGTTTTTSSHHHHTHH CS
        PdxA  90 aglkfpGhtellaeltgtkkvvmmlaseeLrvalvTthipLkevakaitkerllevlrllakalkrdfgiekpriaVaGLNPhaGenGllGrEEeeiie 188
                 ag+k pGhte+++ +t+++  ++m+  ++Lrv++v++h++Lk +++  +k r+l +++ ++++ ++ ++i++priaVa+LNPh ++nGl+G+EE + ++
  CTQ27512.1 136 AGCKLPGHTEIYQVETQSDYGLTMFHVHNLRVFFVSRHMALKAACDYANKARVLACVQQIHHEFTA-LNIKNPRIAVAALNPHGSDNGLFGHEEADNLI 233
                 ******************************************************************.******************************** PP

                 HHHHHHHHCTHEEEEEE-HHHHTSHHHHTT-SEEEESSHHHHHHHHHHHHTTTEEEEEESSSSEEEEESS-S-TTCTTTT---THHHHHHHH CS
        PdxA 189 paiekaraegievegplpaDtlFtkaalkkydavvamYHDqgliplKllafdegvnvtlGLpiirtSvDhGtafdiagkgkadekSlleAik 280
                 pa+++a++ gi++ gp+paD++F+  ++++yda++++YHDqg+i++K+l+f++++++t GLp++r SvDhGtafdiag+gka + S+le+  
  CTQ27512.1 234 PAVKAAQEMGINAIGPVPADSVFHLGKQGRYDAILSLYHDQGHIACKTLDFERSITITFGLPFMRSSVDHGTAFDIAGTGKAGTVSMLESTL 325
                 ***************************************************************************************99865 PP

>> Rapsyn_N  Rapsyn N-terminal myristoylation and linker region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.1e-05     0.095       4      56 ..     147     199 ..     144     204 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.1e-05
    Rapsyn_N   4 dqtkrkiekGLklyesndtekalrvWrkvLkktsdregkfrvLGcLitahsem 56 
                 +q   + + GL +++  +        + +Lk ++d ++k rvL c+ + h e+
  CTQ27512.1 147 YQVETQSDYGLTMFHVHNLRVFFVSRHMALKAACDYANKARVLACVQQIHHEF 199
                 6777788899999999999998888999**********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2733.95
//
Query:       CTQ27513.1  [L=572]
Description: putative type III effector Hop protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-57  192.6   2.5    8.1e-57  192.6   2.5    1.7  2  SBD_N        Sugar-binding N-terminal domain
    1.4e-49  168.3   0.3    3.3e-49  167.1   0.1    1.9  2  EIIBC-GUT_N  Sorbitol phosphotransferase enzyme II N-terminus
    1.4e-31  110.3   0.1    1.4e-31  110.3   0.1    1.9  2  NBD_C        Nucleotide-binding C-terminal domain


Domain annotation for each model (and alignments):
>> SBD_N  Sugar-binding N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.6   2.5   1.4e-60   8.1e-57       1     227 [.     130     355 ..     130     356 .. 0.92
   2 ?   -1.8   0.0      0.36   2.1e+03     139     187 ..     390     438 ..     388     461 .. 0.64

  Alignments for each domain:
  == domain 1  score: 192.6 bits;  conditional E-value: 1.4e-60
                 EEEEESSHHHHHHHHHHHHCTT--EEEECSGGC-....G-SSEEEEE---TTS-HHHHHHHHHHHHHHHHHTT.-SEEEE..TC--TTTTSTHHHHHHH CS
       SBD_N   1 lvviaDDlTGaqdvaaqlakhglrtlllleaeae....eeadavviatnsRalppeeaaarvrealkalkaagaaklsykvvSrfDStlrGnigaevda 95 
                 l+++aDDlTGa++v+++la++gl+t++++++e+      e+ a+v++ +sR lp++ea+++v++a+k+l+a+g a+++ k   r+D tlrG ig e+da
  CTQ27513.1 130 LGIVADDLTGATTVGVLLARSGLKTAAFFDTESFarneVEYPAMVVSSDSRPLPKAEAQHKVSAAVKQLQARG-AHYFTK---RIDTTLRGGIGFEIDA 224
                 689**************************66555554533556******************************.578999...**************** PP

                 HHHHH.-....EEEE--BGGGTEEEETTEEEETTEEGGGSGGGC-SSS----SBHHHHHHCC-SSEEEEE-HHHHTTTCHHHHHHHHHHHHCTECEEEE CS
       SBD_N  96 ladal.lgp..aivvPafpeggRttvdgvlfvegvpleetefardpltpmkesdLrdlleeqtkekvglidletlaegaealaealeallaegervvvv 191
                 ++++l   +  a+vvPa+p+ +R+ v+g+ ++++v l++t++ard  tp++es ++ ll++qt+++vg+i l+++++g+ ++++ l++ +++g+rv+vv
  CTQ27513.1 225 MLEQLpQ-EtvAVVVPAMPQSRRILVGGYSVIDSVALSRTDVARDVRTPVTESWVPGLLAAQTHHQVGHIALTSVMKGEGQIQQDLQEQQQRGVRVIVV 322
                 *****52.235**************************************************************************************** PP

                 -BSSCHHHHHHHHH.HTT..TTT-SEEEESCHHHHH CS
       SBD_N 192 Davseedlaviaealleaaeagkrfllvgaaglaaa 227
                 Da++ +d+++ia a+++    + ++l+v+++++++ 
  CTQ27513.1 323 DAITVDDVDAIAGAVVAL---NWNVLAVDPGPFTER 355
                 **************7666...689*******99976 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.36
                 SS----SBHHHHHHCC-SSEEEEE-HH..HHTTTCHHHHHHHHHHHHCTEC CS
       SBD_N 139 ltpmkesdLrdlleeqtkekvglidle..tlaegaealaealeallaeger 187
                 +tp+++ +L+ l+++  +  v +i+++   l + ++a + +++++ ++  +
  CTQ27513.1 390 ATPVTKKQLQYLIANDAR--VCHIPVDaeLLVDRKNAAEIEVNRVVQHARQ 438
                 689999999999998877..8888877663444333443344554443333 PP

>> EIIBC-GUT_N  Sorbitol phosphotransferase enzyme II N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.1   0.1   5.6e-53   3.3e-49       3     118 ..       6     121 ..       4     237 .. 0.89
   2 ?   -2.7   0.0       0.7   4.2e+03      25      51 ..     499     525 ..     489     533 .. 0.70

  Alignments for each domain:
  == domain 1  score: 167.1 bits;  conditional E-value: 5.6e-53
  EIIBC-GUT_N   3 kiekGsgGwGgpLtitpteekkkvvsvtggeipevvekiaeltGaeavdgFktsvp.eeeiavvvidCGGtlRcGvYPkkripTinvlptgksGPLak 99 
                   i+kG +GwGgpLtitp  + kk+ ++tgg +p+vv++++eltG+  +d Fk+  p  eei + vidCGGtlRcG+YPk++ipTin++ptgksGPLa+
   CTQ27513.1   6 LISKGCKGWGGPLTITPG-QGKKIAYITGGIRPPVVDRLSELTGWPSIDVFKNGEPpAEEIGLMVIDCGGTLRCGLYPKRGIPTINLHPTGKSGPLAE 102
                  699************886.5678******************************98769**************************************** PP

  EIIBC-GUT_N 100 yitediyvSgvkeeqiela 118
                  +i+e iyvSgv++ +ie++
   CTQ27513.1 103 FIHEGIYVSGVTPACIEMV 121
                  ****************998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.7
  EIIBC-GUT_N  25 kvvsvtggeipevvekiaeltGaeavd 51 
                  k +++tgg++   v k    tG+e++d
   CTQ27513.1 499 KGLYMTGGDTMVNVLKELGATGIEMID 525
                  568999887654444444568888887 PP

>> NBD_C  Nucleotide-binding C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.4   8.3e+03      14      69 ..     304     324 ..     281     339 .. 0.51
   2 !  110.3   0.1   2.3e-35   1.4e-31       1     169 [.     384     558 ..     384     559 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.4
                 HHHHHCTS..CTSEEEEEEHHHHHSCCTCHHHHHHHHHHHHHCCTCCTSSEEEEEEC CS
       NBD_C  14 Qlaallkeg.esvpvleldvealledeesaeaeieraleqaeeallaagkdvlvyts 69 
                 Q+++ l+e+ ++                                    g  v+v  +
  CTQ27513.1 304 QIQQDLQEQqQR------------------------------------GVRVIVVDA 324
                 333322222222....................................333333333 PP

  == domain 2  score: 110.3 bits;  conditional E-value: 2.3e-35
                 EEEEE--SHHHHHHHHHHCTS.CT.SEEEEEEHHHHHSCCTCHHHHHHHHHHHHHCCTCCTSSEEEEEECTGHHHH.HH---HHCCC-HHHH..HHHHH CS
       NBD_C   1 lvvvGScspkTtaQlaallkeges.vpvleldvealledeesaeaeieraleqaeeallaagkdvlvytsrepedvrdaleslqaelglera..geria 96 
                 l+v+GS++p+T++Ql++l ++  + v ++ +d+e l++ +++ae e++r+++ a++ + a++++  v++s+   ++  +l++ ++++gl++   ++ i+
  CTQ27513.1 384 LIVAGSATPVTKKQLQYLIAND-ArVCHIPVDAELLVDRKNAAEIEVNRVVQHARQCVPAQHNALFVFESALTGRL-LNLQEEEQRFGLAHGeaAQNIN 480
                 89*****************996.557889********999*****************7667889999999999999.789999999***99999***** PP

                 HHHHHHHHHHH..HC.TECEEEEESHHHHHHHHHHCT--EEEEEEEEETTEEEEEESS..SSS-EEEEE-TT-S-TTH CS
       NBD_C  97 aalaeiarrlv..er.gvrrlviaGGdtssavlkaLgvkgleilgeiapgvplgsaig..adglpvvlKgGnvGdedt 169
                 + l++i+r+++  ++ ++++l+++GGdt+ +vlk+Lg++g+e+++ + p + +++ ig  ++gl +v KgG  G ed+
  CTQ27513.1 481 HGLGSIVREVLncASgEIKGLYMTGGDTMVNVLKELGATGIEMIDYVIPQTDMVRIIGgdYAGLICVGKGGLTGPEDI 558
                 ***********986656*******************************************99*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 4585.78
//
Query:       CTQ27514.1  [L=339]
Description: 2-keto-3-deoxygluconate permease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-108  362.7  31.8   1.8e-108  362.5  31.8    1.0  1  KdgT      2-keto-3-deoxygluconate permease
  ------ inclusion threshold ------
      0.031   14.3   6.4       0.14   12.3   0.7    3.3  3  DUF2953   Protein of unknown function (DUF2953)
      0.036   14.1   0.1       0.06   13.3   0.1    1.3  1  DUF5619   Domain of unknown function (DUF5619)
        7.8    6.8  14.0       0.44   10.8   1.4    3.2  3  TMEM238   TMEM238 protein family


Domain annotation for each model (and alignments):
>> KdgT  2-keto-3-deoxygluconate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.5  31.8  4.1e-112  1.8e-108       2     305 .]       6     308 ..       5     308 .. 0.99

  Alignments for each domain:
  == domain 1  score: 362.5 bits;  conditional E-value: 4.1e-112
        KdgT   2 kktlekiPGglmvvPLligalintfaPevleiGsfttalfkkgalallglfllcvGaqiklkaagkvlkkggvlllvklliavllgllvakllgeegll 100
                 +++++k+PGgl+++PLl+++lintfaP+vl+iG++ttalfk g++a++g+fll++G++i++++ag  l+kg+vll++k+l+++l +++++ l+g++g+l
  CTQ27514.1   6 LEKMNKVPGGLIIIPLLVAILINTFAPQVLSIGGPTTALFKVGSSAMMGIFLLICGTSINIRQAGLPLYKGAVLLFLKCLAGALAVWVAGTLFGPSGFL 104
                 579************************************************************************************************ PP

        KdgT 101 GlsvlaliaaltnsNggLYlalmgqyGdeedagavsllslesgPfltmlilgaaglasipiqslvaviiPlivGiilGnldeelrkflkkgvkilipfl 199
                 G+s+lalia+lt+sN++LY+al+++yGd++daga+s++++++gPf+tm++lg++gla+ip+ +l++++iPl++G+++Gnlde+++++++ +++++i+++
  CTQ27514.1 105 GISTLALIACLTSSNSSLYIALCSNYGDASDAGAISVFCIKDGPFVTMMVLGVSGLANIPFAALLSMLIPLLIGMLWGNLDERFKQLCAAAQPLVIIIM 203
                 *************************************************************************************************** PP

        KdgT 200 afalGaginlktivkaglsGilLgvivvvvtgillylvdrlllkkkgvagaAasstAgnavatPaavaaadpsfapvaasAtaqvaaavivtailvPll 298
                 +fa+Ga+ +++t+++aglsGilLg+i ++ tgi++y++++l+lkkk++ gaA ++tA+ ++ tPa+va+adps+a ++++Ataq+a+a i+t+i +P+l
  CTQ27514.1 204 SFAIGANSSISTVFTAGLSGILLGIISAL-TGIVFYFIYNLFLKKKSALGAALGTTAASSALTPAMVAQADPSLAMYVDAATAQLATASIITMITAPIL 301
                 *************************9865.********************************************************************* PP

        KdgT 299 talvakr 305
                 +a+++kr
  CTQ27514.1 302 VAWFDKR 308
                 ****997 PP

>> DUF2953  Protein of unknown function (DUF2953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.7   7.6e+03      11      35 ..      42      66 ..      41      69 .. 0.68
   2 ?    3.7   0.0     0.014        63      13      34 ..     168     189 ..     159     197 .. 0.80
   3 ?   12.3   0.7     3e-05      0.14      10      34 ..     221     245 ..     219     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.7
     DUF2953 11 TgilyGliwaikgllygllsnlfni 35
                T+++  + +a++g+++ +++   ni
  CTQ27514.1 42 TALFKVGSSAMMGIFLLICGTSINI 66
                5555556678888888888777776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.014
     DUF2953  13 ilyGliwaikgllygllsnlfn 34 
                 +l+ li  ++g+l+g l+++f+
  CTQ27514.1 168 LLSMLIPLLIGMLWGNLDERFK 189
                 5555677899999999999987 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 3e-05
     DUF2953  10 dTgilyGliwaikgllygllsnlfn 34 
                 + gil+G+i+a++g+++ +++nlf 
  CTQ27514.1 221 LSGILLGIISALTGIVFYFIYNLFL 245
                 68********************985 PP

>> DUF5619  Domain of unknown function (DUF5619)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   1.3e-05      0.06      18      51 ..     285     317 ..     270     329 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
                 HHHHH---TT---E.EEEEEEEE-----EES--- CS
     DUF5619  18 AkklAkeiAeelleepmllsWkdrkrgkesPeve 51 
                 A +lA++    +++ p+l++W+d++ +k++P+ e
  CTQ27514.1 285 A-QLATASIITMITAPILVAWFDKRLKKRAPAAE 317
                 3.4555555579999****************965 PP

>> TMEM238  TMEM238 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.4   9.9e-05      0.44      15      47 ..      52      84 ..      42      97 .. 0.84
   2 ?   -2.7   0.6       1.5   6.9e+03      20      36 ..     152     170 ..     149     183 .. 0.54
   3 ?    4.3   0.4      0.01        46       5      35 ..     215     245 ..     211     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.9e-05
     TMEM238 15 vvGlvlLlvGifaellfgDllvytGaliiflSL 47
                ++G++lL+ G  +++    l +y Ga+++fl  
  CTQ27514.1 52 MMGIFLLICGTSINIRQAGLPLYKGAVLLFLKC 84
                79****************************953 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
     TMEM238  20 lLlvGi..faellfgDllv 36 
                 ++++G+  +a++ f  ll 
  CTQ27514.1 152 MMVLGVsgLANIPFAALLS 170
                 5555553345555555554 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.01
     TMEM238   5 vflalavvfdvvGlvlLlvGifaellfgDll 35 
                 ++++ ++  +++G++  l+Gi+  + +  +l
  CTQ27514.1 215 TVFTAGLSGILLGIISALTGIVFYFIYNLFL 245
                 67899999999**********9998887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2492.88
//
Query:       CTQ27515.1  [L=124]
Description: Glucitol/sorbitol-specific phosphotransferase enzyme IIA component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.8e-34  116.1   0.0    7.6e-34  116.0   0.0    1.0  1  PTSIIA_gutA  PTS system glucitol/sorbitol-specific IIA compon


Domain annotation for each model (and alignments):
>> PTSIIA_gutA  PTS system glucitol/sorbitol-specific IIA component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0   0.0   4.2e-38   7.6e-34       2     113 .]       6     117 ..       5     117 .. 0.98

  Alignments for each domain:
  == domain 1  score: 116.0 bits;  conditional E-value: 4.2e-38
                  EEEEEEEE-TTT--TTS.-EEEEE-TTS-HHHHTTCEEEE-T.GG----TT-EEEETTEEEEEEEE-TTHHHHHHHHS-EEEE-S---SGG-TTEEEE CS
  PTSIIA_gutA   2 yqttvteiGeeaeefleekmlIlFgeeapdeLadysviheveelkeeikkgdtltigeqeykitaVGevanknLkelGHvtlkFdgakeaelpgaiyl 99 
                  y+ ++t++Ge +e +l e  lIlF++ +pd++a+y+ +h+ +el+ e+++g+++++++++y++taVG+va+ nL++lGH+tl+Fdga+ aelpg+++l
   CTQ27515.1   6 YSLRITAVGEYVEYSLRELRLILFSDAVPDDIASYCAVHQASELTAELSPGQQMKLNDKNYRVTAVGRVATANLRQLGHITLNFDGADIAELPGTVHL 103
                  8899********************************************************************************************** PP

                  ES-S-----TT-EE CS
  PTSIIA_gutA 100 egkelpelkvgsti 113
                   g++ + ++ g++i
   CTQ27515.1 104 YGEPPQIIQPGDQI 117
                  **988899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1024.62
//
Query:       CTQ27516.1  [L=152]
Description: putative sugar phosphate isomerase YwlF [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-48  162.9   0.4    4.9e-48  162.7   0.4    1.0  1  LacAB_rpiB  Ribose/Galactose Isomerase


Domain annotation for each model (and alignments):
>> LacAB_rpiB  Ribose/Galactose Isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.7   0.4   2.7e-52   4.9e-48       1     139 []       4     142 ..       4     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 162.7 bits;  conditional E-value: 2.7e-52
                 EEEEE-GCGHHHHHHHHHHHHHTTTEEEEECESS.SS---HHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHTT- CS
  LacAB_rpiB   1 iaigsDhagfelkekikeyLkekghevidvgtes.eesvdYpdfakkvaeavasgeadlgiliCgtGiGmsiaaNkvkgiraalchdeesAklarehnn 98 
                 iaig+D+a+++ +++i++yL+  g++v d+  ++ + s+ Ypd+a++va  +++ge ++giliCgtGiGmsi+aNkv+g+raa+chd++sA++ar++nn
  CTQ27516.1   4 IAIGADDAAYAFRDAIVAYLNGLGINVADYSSDKrQGSTVYPDVAHAVAMSIKQGEHERGILICGTGIGMSIVANKVPGVRAAQCHDTFSAERARKSNN 102
                 9*******************999********999888************************************************************** PP

                 -SEEEEETTTS-HHHHHHHHHHHHHS---.HTHHHHHHHHH CS
  LacAB_rpiB  99 anvlalGarvigeelakeivkaFletefeeggrharrvdki 139
                 a++++lGarvig el k+i++a+le+e+e gg +a +v+ i
  CTQ27516.1 103 AQIITLGARVIGAELGKKIIQAWLESEYE-GGGSAPKVERI 142
                 ****************************7.99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1163.28
//
Query:       CTQ27517.1  [L=316]
Description: transaldolase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-95  319.1   0.0    2.8e-95  319.0   0.0    1.0  1  TAL_FSA   Transaldolase/Fructose-6-phosphate aldolase


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.0   0.0   1.6e-99   2.8e-95       1     287 []      13     312 ..      13     312 .. 0.95

  Alignments for each domain:
  == domain 1  score: 319.0 bits;  conditional E-value: 1.6e-99
                 EEEE---HHHHHHHHHTT---EEE--HHHHHH..T...TS.-HHHHHHHHHHH............................H-S-EEEE-S-...-SHH CS
     TAL_FSA   1 lvlDtadrelikklleekgiqgvTtNPsliekaik...ykalydeaieeikkeg....kkvkeaydkLavedilealdllgadgrvslEVdarlsddte 92 
                 +v+Dt+d+e+ikk+++    q++TtNPsl++ka++   y++l+ +ai +++++g     +  +a+d++av++++e+l  +  +gr+s+EVdar++ d  
  CTQ27517.1  13 VVADTGDIESIKKFAP----QDATTNPSLVLKAAQlpqYQPLIADAIGKARRQGgsaeTQLINACDQVAVDIGSEVLRHV--PGRISTEVDARFAWDRG 105
                 69**************....**********************************99999999******************..***************** PP

                 HHHHHHHHHHTT-T.......TEEEEEESSHHHHHHHHHHHHTT--EEEEEE-SHHHHHHHHHHT-SEEEEBHHHHHTTT.............S-HHHH CS
     TAL_FSA  93 atieeArrlialye.....renvlIKiPateeGikAikeLkkeGinvnvTliFsleqalaaaeagasviSpFvgRiddll.kkleekdklkgkddgval 185
                  ++++Ar+li+lye      e++lIK++at+eGi+A++eL+++Gin+n+Tl+Fs++qa+a+aeag+ +iSpFvgRi d++ k++ +++++ ++d+gv +
  CTQ27517.1 106 MCVAKARKLIQLYEkngigPERILIKLAATWEGIRAAEELEQSGINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYqKHQPQSAYQVDSDPGVVS 204
                 ********************************************************************************5555555999999****** PP

                 HHHHHHHHHHHT-S-EEEEBS--SHHHHHHHHT-SEEEE-HHHHHHHT--HHH.....................................HHHHHHHHH CS
     TAL_FSA 186 vkeiynyykklgysTkvmaasfrnveeveelagcdtvTippkllealakhgkts.eklee...eeiek..lleklfrlginedavaeelldegikkFak 278
                 v++iy+yyk++gy+T vm+asfr +e++++lagcd++Ti+p+ll++la+++ +  ++l+    +e +   +++++f +++ +d +a+e+l+egi+ Fa 
  CTQ27517.1 205 VRQIYQYYKSHGYDTVVMGASFRRIEQIQALAGCDRLTISPALLDELAASEGVLtRQLTPgcvTETRPspMTQAEFLWQHHQDPMAVEKLAEGIRLFAV 303
                 **************************************************99944666665664444467***************************** PP

                 HHHHHHH-X CS
     TAL_FSA 279 dlekllasl 287
                 d+ kl++++
  CTQ27517.1 304 DQVKLEQQI 312
                 *****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2497.86
//
Query:       CTQ27518.1  [L=542]
Description: Medium-chain-fatty-acid--CoA ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-86  288.3   0.0    9.6e-86  288.0   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    3.8e-13   50.2   0.0    7.3e-13   49.3   0.0    1.5  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.0   0.0   1.1e-89   9.6e-86       5     422 ..      19     439 ..      16     440 .. 0.89

  Alignments for each domain:
  == domain 1  score: 288.0 bits;  conditional E-value: 1.1e-89
                  HHHSTTSEEEEE...CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE CS
  AMP-binding   5 aaktpdkvalvd...sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli 99 
                  aa+++  + +v+   +ge ++  ++e+ +r++rlA++L slG+ +g r+a l++n  +++ +++a+++ G v+ ++np+l+ ++l+yil+d+  +vl+
   CTQ27518.1  19 AAQYHSETEIVSvstGGEKERSCWGEVASRAQRLASALASLGLPPGARCATLAWNNRRHLEIYFAVASGGWVTHTVNPRLSVDHLRYILNDAADEVLF 116
                  566666666666778999******************************************************************************** PP

                  ETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS...-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHH CS
  AMP-binding 100 atvdselleklleaaakleavklvivldadellkeeelkeeeeseekae...kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkle 194
                     d++ l+ +++  ++l++vk+v+++++ + +  ++l++    ++  +    + + ++l++ ++a ++YTSGTTG+PKGV  +hr+lv  + s + +
   CTQ27518.1 117 --FDQTFLPLVAQLLPQLPTVKHVVLMESRSEAALSQLPSLLFYDDLLQqgmADYRWPQLNELTPASLCYTSGTTGRPKGVLNTHRSLVLHALSGNQP 212
                  ..99999999******************99999999988888777655356745566689999*************************9998886555 PP

                  HCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT-SEEEEE CS
  AMP-binding 195 trfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlsslrlvllg 291
                  +  +++++d +l ++p++h+ ++    ++a ++Ga++vl+   ++ld + ll+l++++kvtv +gvP ++  ll+  + ++    + +l+  + +l+g
   CTQ27518.1 213 DAAGISAKDSLLPVVPMFHVNAW-GTPFIAAMVGARLVLPG--PHLDGDSLLQLLAAEKVTVGFGVPVIWAGLLAaMR-RT----EVRLPEFKRALVG 302
                  5577889****************.***************66..6688999***********************99444.33....3489**9999*** PP

                  SS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE.........CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEE.TTSE.EEEEEEETTS-SEB CS
  AMP-binding 292 geplspellrffralfgeevlegYGlTEttgvvtv.........lpleedkkklgsvGkplpgvevkivDeetgepvp.dgee.GellvrgpgvmkgY 378
                  g++l+p+++++f++ +g ++ +++G+TEt+++ t+         l+ +e++k++  +G+p+ g+e+ +vD + gep+p dg++ G l vrg++v + Y
   CTQ27518.1 303 GSALPPSMAEAFQRDYGIALTHAWGMTETSPIGTIntplskhdaLRAQEQQKQRAGQGRPIFGIELQVVDVD-GEPLPrDGQSqGYLQVRGHWVVEQY 399
                  *********************************88899*****94445555555669**************9.99998566669************** PP

                  TT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 379 lkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                  +++ +a a +     +w+ TGD+g+ld++Gyl i +R+kd+ik+
   CTQ27518.1 400 YGQ-DASALTAA---GWFDTGDIGTLDANGYLVISDRAKDIIKS 439
                  *99.55555543...6**************************97 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   8.1e-17   7.3e-13       1      76 []     448     523 ..     448     523 .. 0.94

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 8.1e-17
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---..---HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg..sealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+E++ ++hp+V+ aa+++ +++++ e++v + v ++g  +e  e +L ++ +k+++++  p++v+fvd+lp  ++GK
     CTQ27518.1 448 ELENIAIAHPGVRSAAAIAARHPRWDERPVLLCVRAEGgeVE--ETDLLSWFEKRVPKWQIPDRVIFVDALPVSATGK 523
                    89********************************97674324..7********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 4534.17
//
Query:       CTQ27519.1  [L=574]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-19   69.0   0.2    3.4e-10   39.0   0.0    3.2  3  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.5   1.4e-05      0.25      27      66 ..      10      49 ..       3      70 .. 0.85
   2 !   39.0   0.0   1.9e-14   3.4e-10     183     281 ..     220     333 ..     190     350 .. 0.81
   3 !   16.0   0.0   1.9e-07    0.0033     353     429 ..     383     473 ..     381     485 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 1.4e-05
                -HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH CS
      Aldedh 27 taedvdaavaaAkeafkawaklpaeeRaeiLrkaadllee 66
                t +++daa+ a  +a ++wa++++++R ++Lr++ d+l+ 
  CTQ27519.1 10 TCSQYDAALHALSAARQRWAETSVNRRLALLRQIKDALAG 49
                5679999**9999999********************9975 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 1.9e-14
                 TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCT..........T..SEEEEEE---EEEEE....-TTSHHHHHHHHHHHHHHGGG CS
      Aldedh 183 kgvlnvvtgsgsevgealvehpevdkvsftGstevgrkiakaaakn..........l..krvtlElGGknpliv....ledaDldkaveaivkgafgna 265
                  ++l +vtg ++ +g+ l++hp vd +++tGs+e+   i+   +++          l   rvt ElGG +p+i+    +++aD+   +++++++ + n 
  CTQ27519.1 220 MDALRIVTG-DARAGAWLTTHPAVDEIHITGSRETHDVIVWGEGETarqrraagtpLnpRRVTSELGGVSPTIIvpgpWSEADIAFQAQQLATQKMNNG 317
                 57899****.888**********************9999754443322234444442559*************94444579****************** PP

                 GTSTTSEEEEEEEHHH CS
      Aldedh 266 GQvCiaasrllvqesi 281
                 G +C+a + l++q++ 
  CTQ27519.1 318 GFNCVASQVLILQQGW 333
                 ************9975 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 1.9e-07
                 -EEEES-TTTSHHHHS---SSEEEEEEESS......HHHHHHHHHSSSEE.SEEEEE....-SB...HHHHHHHHHHS-SSEEEESSSST- CS
      Aldedh 353 PtvlanvtpdmriaqeEiFGPVlsvikfkd......eeeaieiaNdteyG.Laagvf....tkd...leraervaerleaGnvyiNdsttg 429
                 P ++an+++d   +q+E+FGP lsv++ +       + +ai +aN+   G L+a ++    t++    +r + ++++l++G+v iN+++ +
  CTQ27519.1 383 PLIVANTDDDPGFCQQEVFGPGLSVTRLEAdsaesfLRQAIGYANQRLQGtLGANIVihprTRKaigRKRFNALIAELRYGTVAINCWSGV 473
                 99*************************994344455689******987764677665334433222257889999************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4199.72
//
Query:       CTQ27520.1  [L=348]
Description: polyamine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-38  130.7   2.7    7.9e-38  130.3   2.7    1.1  1  SBP_bac_6      Bacterial extracellular solute-binding protein
    1.6e-37  129.9   6.5      2e-37  129.6   6.5    1.1  1  SBP_bac_8      Bacterial extracellular solute-binding protein
    5.1e-13   49.3   0.0      8e-13   48.7   0.0    1.2  1  SBP_bac_11     Bacterial extracellular solute-binding protein
      1e-12   48.7   9.0    1.8e-12   47.9   9.0    1.3  1  SBP_bac_1      Bacterial extracellular solute-binding protein
    3.1e-09   36.1   0.6    1.2e-08   34.1   0.1    2.0  2  Lipoprotein_8  Hypothetical lipoprotein (MG045 family)


Domain annotation for each model (and alignments):
>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   2.7   2.2e-41   7.9e-38       4     240 ..      77     319 ..      74     323 .. 0.88

  Alignments for each domain:
  == domain 1  score: 130.3 bits;  conditional E-value: 2.2e-41
   SBP_bac_6   4 pdlilsfdkdflekfieeglfqpldpanlpnvnkdfa...eeglkdp.dgkyypygvgplvlavnkdrlkgrpvPksWaDLldPeykgkvalpgnngsd 98 
                 +dl++  + +f++k+ +eg++q++d+ +l n++ +++    ++  dp + + +py +g++ + vn+++++ + + +sWaDL++Peyk +  l ++++  
  CTQ27520.1  77 YDLVV-PSTYFVDKMRKEGMLQKIDKSKLTNFS-NLDpqmLNKPFDPnNDYSIPYIWGATAIGVNSEAIDPKTI-TSWADLWKPEYKSSLLLTDDAR-E 171
                 79***.*******************77777777.4554555677788466666*****************9999.*******************776.6 PP

   SBP_bac_6  99 lfealllalyk...dfgedgvkkllrnlkanlhpaq...mvkaagslesgepavsvvpyffadilpekkkgknlkvvwPedGalvspifmlvkkg.kkk 190
                  f+++l  l +   +++ +++++  ++lk+++ +++   +++ a++  +ge  v++++ + + ++ +++ g +l+v+wP++G++++ +++ ++++ k+ 
  CTQ27520.1 172 VFQMALRKLGYsgnTTDPKEIEAAYNELKKLMPNVAafnSDNPANPYMEGE--VNLGMVWNGSAYVARQAGTPLEVIWPKEGGIFWMDSLSIPANaKNV 268
                 66666666666**9999**********************************..********************************************** PP

   SBP_bac_6 191 elakafidfllspevqailakaggvfPvv..tnpavlnelpegaklkwldwd 240
                 + a ++i+fll p+v++++a+  g +P+   ++ + l ++  + k + +d +
  CTQ27520.1 269 DGALKLINFLLRPDVAKQVAETIG-YPTPnlAARKMLSPAVANDKSLYPDAA 319
                 ***********************9.**9777666666666666666666655 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.6   6.5   5.5e-41     2e-37       2     278 ..      42     312 ..      41     316 .. 0.91

  Alignments for each domain:
  == domain 1  score: 129.6 bits;  conditional E-value: 5.5e-41
                 HHHHHHHH-TEEEEEEE--SS.SHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GG..GSTTHHH-HH..HHHTT--.TS.----EEEEEEE CS
   SBP_bac_8   2 lakefekktgvkvnvvtaasn.dleqklkaalaagtapdidvvwanedalatlaeeglladls..dldnlddltd..alaavgy.dgklygvPyasetp 94 
                 l ++f+k+tg+kv ++t++sn ++ +klk+  ++g +   d+v++++++++++ +eg+l+ ++  +l n  +l++    ++++  ++  y++Py ++  
  CTQ27520.1  42 LLEQFTKETGIKVIYSTYESNeTMYAKLKT-YKDGAY---DLVVPSTYFVDKMRKEGMLQKIDksKLTNFSNLDPqmLNKPFDPnND--YSIPYIWGA- 133
                 579***************665488999999.567776...699*****************666448889999977688888998566..********9. PP

                 -EEEEEHHHHHHS.---BHHHHHHHHHHHHHH-SEGG---GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE-S..--SSTTTTTSBSEE CS
   SBP_bac_8  95 yvliynkdllekaedpktwdellaaakklkgkfglpdpasgwlqaallakdgksldddggkdglkealellkklkdngktydtgadavsefanGevaft 193
                 +++ +n ++++ + ++++w++l++  +++k    l+d+a  ++q+al   +g+s + + +++++++a + lkkl +n+  ++++ +  + + +Gev  +
  CTQ27520.1 134 TAIGVNSEAIDPK-TITSWADLWK--PEYKSSLLLTDDAREVFQMALRK-LGYSGNTT-DPKEIEAAYNELKKLMPNVAAFNSD-NPANPYMEGEVNLG 226
                 8*********998.**********..********************999.***99766.7******************999765.6778********** PP

                 EE-TTHHHHHH-TTTSEEEE--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S-TTT..HHHHHH-H CS
   SBP_bac_8 194 ingswdiaaaqkagkklgaivpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnksaal..spevkkdp 278
                 + +++++  a++ag +l++i+pk+g + ++++l +p+nakn d +Al+++++l+ p+  ++ ae++gy+++n +a    sp+v++d+
  CTQ27520.1 227 MVWNGSAYVARQAGTPLEVIWPKEGGIFWMDSLSIPANAKNVD-GALKLINFLLRPDVAKQVAETIGYPTPNLAARKmlSPAVANDK 312
                 *******************************************.8*******************************77799999986 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   2.2e-16     8e-13      16     222 ..      42     285 ..      36     292 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 2.2e-16
                 HHHHHHHHH---EEEEESSH.HHHHHHHHHH....-SEEEESSH.HHHHHHHHGGGGG.........................GG-EEEEEEEEEEEES CS
  SBP_bac_11  16 laaaFeahtgvkvevsaggs.gklarqiadga..rpDvwipassawlellaaaglvqa.........................esavplassplviavp 86 
                 l ++F+++tg+kv +s+ +s  +++++++  +  ++D+++p +   +++++++g +q+                         + + p+     +i v+
  CTQ27520.1  42 LLEQFTKETGIKVIYSTYESnETMYAKLKTYKdgAYDLVVPST-YFVDKMRKEGMLQKidkskltnfsnldpqmlnkpfdpnnDYSIPYIWGATAIGVN 139
                 6799*********999888824556677666678********7.69***************************************************** PP

                 TT-..TT---SHHHHHHSS-..-EEEE--T-TTTTHH.HHHHGGG--......HHHHHHHHHTEEEEESSHHHHHHH.....HHTTT-SEEEEEHHHHH CS
  SBP_bac_11  87 kgn..pkkikgwadLlkpgl..klavadPttspsGlaalalleaaga......qellkalekkvvklgessrqllta.....veageadagivyeseak 170
                  ++  pk+i++wadL+kp+   +l ++d     +    +++l+++g       ++ ++a ++   kl +++    ++      ++ge+ +g v+  +a+
  CTQ27520.1 140 SEAidPKTITSWADLWKPEYksSLLLTDD----AREVFQMALRKLGYsgnttdPKEIEAAYNELKKLMPNVAAFNSDnpanpYMEGEVNLGMVWNGSAY 234
                 ***99*************99545888885....4456667777776666688844444444455555555544444455555999*********99996 PP

                 ...HSTTSSEEEE--TTT--...EEEEEEEE-TT--HHHHHHHHHTTSHHHHH CS
  SBP_bac_11 171 aa.engdkleavylpeglnldpldypaavlkkaakreaAraFlafLrspeaqa 222
                  a ++g++le++ ++eg  +  +d ++ ++++a++   A ++++fL+ p++ +
  CTQ27520.1 235 VArQAGTPLEVIWPKEGGIF-WMD-SLSIPANAKNVDGALKLINFLLRPDVAK 285
                 66489**************8.667.5789********************9876 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   9.0     5e-16   1.8e-12      13     314 ..      41     284 ..      32     285 .. 0.74

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 5e-16
                 HHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCEEE.ES.E CS
   SBP_bac_1  13 lvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkildskv.ly.v 109
                  + ++f+k ++gikV + + +s++ +   ++     dg++D++  ++++++++ k+g l+ +d+    +  + +++         l k +d  +  y +
  CTQ27520.1  41 GLLEQFTK-ETGIKVIYSTYESNETMY--AKLKTYKDGAYDLVVPSTYFVDKMRKEGMLQKIDKSKLTNFSNLDPQ--------MLNKPFD-PNnDYsI 127
                 44588***.8*******9999999998..33333344789****************************96666554........4555555.3347999 PP

                 EEE.EEEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHHHHHHHHHHHH CS
   SBP_bac_1 110 Ply.aargliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaatylvklyava 207
                 P+  +a+++ +N    ++  ++   +W +l ++  k       + ++  +  a+++++y         g                 t+++ ++++y   
  CTQ27520.1 128 PYIwGATAIGVNSEAIDPKTIT---SWADLWKPEYKSSLLLTDD-AREVFQMALRKLGYS--------G---------------NTTDPKEIEAAY--- 196
                 99955******99999954444...6666655555554444444.444444444444443........1...............111444444444... PP

                 HHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCSTHHHHHHHHH CS
   SBP_bac_1 208 nltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgsknpeaAkkFld 306
                   + ++ +++++ +++++ ++   +Ge+ +++v++++a++a ++++    + +ke+  +                  + + l ip+++kn ++A k+++
  CTQ27520.1 197 -NELKKLMPNVAAFNSDNPANPYMEGEVNLGMVWNGSAYVARQAGTPLEVIWPKEGGIF------------------WMDSLSIPANAKNVDGALKLIN 276
                 .555677777777777777888889*************999999999999999999988..................********************** PP

                 HHTSHHHH CS
   SBP_bac_1 307 fllspeaq 314
                 fll p+ +
  CTQ27520.1 277 FLLRPDVA 284
                 ***99865 PP

>> Lipoprotein_8  Hypothetical lipoprotein (MG045 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1   3.5e-12   1.2e-08      12      98 ..      12     104 ..       1     116 [. 0.75
   2 ?   -0.1   0.1     0.083     3e+02     187     202 ..     161     176 ..     142     241 .. 0.65

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 3.5e-12
  Lipoprotein_8  12 lgitlisiltacs.ksklvlanfesyvdPlllerakrkrk..lsfltydnneklisli...kakisdvavasayevaelakngllkkidWakf 98 
                      +++  + +    +++l + n+  yv P lle+  +     + ++ty++ne + + +   k+  +d+ v s+y v ++ k+g+l+kid +k+
     CTQ27520.1  12 SALAIGMGAAHADdSKTLYFYNWTEYVPPGLLEQFTKETGikVIYSTYESNETMYAKLktyKDGAYDLVVPSTYFVDKMRKEGMLQKIDKSKL 104
                    4444444433333488999**********888987766544499*********987661115679************************9996 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.083
  Lipoprotein_8 187 nkliliddartifdla 202
                    + l+l ddar +f++a
     CTQ27520.1 161 SSLLLTDDAREVFQMA 176
                    4566677777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2712.92
//
Query:       CTQ27521.1  [L=261]
Description: polyamine transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-19   70.3  16.3    1.7e-19   70.3  16.3    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.32   10.6   8.6        0.4   10.3   7.5    1.7  1  DUF3341       Protein of unknown function (DUF3341)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   1.3     0.003        27      13      60 ..       3      71 ..       1      77 [. 0.62
   2 !   70.3  16.3   1.9e-23   1.7e-19       2     181 ..      75     253 ..      74     257 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.003
  BPD_transp_1 13 nkkldkllrpliivllslPsfvlaillvlvf.....................vilsilghlilpviill 60
                  ++ l+  +++ i++ l++P+++l++  +                        ++l++++h+ +++++ +
    CTQ27521.1  3 GRLLRGGFMTAIYAYLYIPIIILIVNSFNRSrfginwqgfttdwysllmnndSLLQAAQHSLTMAVLSA 71
                  78899999**************66665522244444444556666666555555555555555544444 PP

  == domain 2  score: 70.3 bits;  conditional E-value: 1.9e-23
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   +l+G+l+a   ++++++++ +++++ +v+++ P +v+ai l+++ ++l +++ +++++++  +++ +p+v++++++ l+  +    eaa+ lGas+ 
    CTQ27521.1  75 TLIGSLTAvalYRYRFRGKPFVSGMLFVVMMSPDIVMAISLLVL-FMLIGVQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEM 170
                   6899999999****************************999955.66679*********************************************** PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldp 181
                   +i+rk++lP+alp +++g +l+f++++ + v+ +f++   G g+ +l   +++++  +    v al+ ++l+l+lv+ i  +l+++
    CTQ27521.1 171 TILRKIILPLALPAVAAGWLLSFTLSMDDVVVSSFVT---GPGYEILPLKIYSMVKVGVSPEVNALATILLVLSLVMVIASQLIAR 253
                   *************************************...6689999999999999888556666667777777777776666665 PP

>> DUF3341  Protein of unknown function (DUF3341)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   7.5   4.5e-05       0.4      54     112 ..      63     128 ..      49     150 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.5e-05
                 HHHHHHHHHHHHHHHHHIIIIISS---STT--SS-H.......HHHHHHHTHHHHHHHHHHHHHTT CS
     DUF3341  54 allgGllGlalalllqvytsvvdyplnigGkPlfsl.......pafipitFEltvLfaalatvlgl 112
                 +l++++l +++a+l+  +t+v  y + + GkP++s         + i+++  l vLf  +++ lg+
  CTQ27521.1  63 SLTMAVLSATFATLIGSLTAVALYRYRFRGKPFVSGmlfvvmmSPDIVMAISLLVLFMLIGVQLGF 128
                 6899*******************************9333333333344445555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1898.28
//
Query:       CTQ27522.1  [L=285]
Description: polyamine transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-18   65.3  16.1    5.8e-18   65.3  16.1    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2     0.063   1.1e+03      57      73 ..      11      27 ..       5      51 .. 0.65
   2 !   65.3  16.1   3.2e-22   5.8e-18       1     183 [.      83     282 ..      83     284 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.063
  BPD_transp_1 57 iillllsaapyvrlirr 73
                  +i+++++++ +++++ +
    CTQ27522.1 11 VIATIVGWLVLFVFLPN 27
                  45555555544444433 PP

  == domain 2  score: 65.3 bits;  conditional E-value: 3.2e-22
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfv..............laillvlvfvilsilghlilp..viillllsaapyvrlirraalrslpk 81 
                   g+++++++a +  +k++ ll++l iv++++ s++              l  +l+++ vi++ +  +++p  vii l++ ++p++++  ++ ++ l++
    CTQ27522.1  83 GYPFAWFLA-RLPQKVRPLLLFLLIVPFWTNSLIriyglkiflstkgyLNEFLLWLGVIDTPIRIMFTPsaVIIGLVYILLPFMVMPLYSSIEKLDR 178
                   789******.99**********************8888665555544433334444489999998888873566666777899************** PP

  BPD_transp_1  82 dlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis....nggvlalviavlllnlvadi 174
                    l eaa+ lGas+ q+f ++++P+++p ii+g +l++  ++g + +  ++g+ +  ++l+ ++i ++ ++       ++++++l++++ l++l++  
    CTQ27522.1 179 PLLEAAKDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAK--NLLIGNVIKSQFLNIRDwpfgAATSITLTLVMGLMLLIYWR 273
                   ***************************************************554..5555555555555544466666******************* PP

  BPD_transp_1 175 lqrlldprv 183
                    +rll+++v
    CTQ27522.1 274 AARLLNKKV 282
                   ******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2144.59
//
Query:       CTQ27523.1  [L=378]
Description: polyamine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-36  126.1   0.0    2.7e-36  125.1   0.0    1.5  1  ABC_tran      ABC transporter
    1.5e-08   34.7   0.0    3.6e-08   33.5   0.0    1.7  1  TOBE_2        TOBE domain
    2.1e-06   27.8   0.0      0.037   13.8   0.0    2.7  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.5e-05   24.5   0.4     0.0071   15.8   0.3    3.2  3  TniB          Bacterial TniB protein
    1.8e-05   25.0   0.7    0.00012   22.3   0.7    2.2  1  AAA_22        AAA domain
    4.4e-05   23.0   0.7     0.0018   17.7   0.7    2.3  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00059   20.3   0.0     0.0066   16.9   0.0    2.3  1  AAA           ATPase family associated with various cellular 
     0.0023   17.9   0.0      0.004   17.1   0.0    1.4  1  Rad17         Rad17 P-loop domain
     0.0052   16.7   0.2      0.022   14.7   0.0    1.9  2  RsgA_GTPase   RsgA GTPase
     0.0074   16.7   0.3      0.014   15.8   0.3    1.7  1  AAA_16        AAA ATPase domain
     0.0082   15.7   0.1       0.73    9.4   0.0    2.4  2  AAA_25        AAA domain
  ------ inclusion threshold ------
      0.018   15.3   0.0        1.5    9.0   0.0    2.5  2  AAA_28        AAA domain
      0.019   13.8   0.0       0.15   10.9   0.0    2.1  1  ABC_ATPase    Predicted ATPase of the ABC class
      0.037   14.6   0.0       0.13   12.8   0.0    2.0  2  AAA_18        AAA domain
      0.073   13.1   0.3       0.27   11.2   0.1    2.1  2  AAA_5         AAA domain (dynein-related subfamily)
      0.075   13.1   0.0       0.45   10.5   0.0    2.3  2  AAA_14        AAA domain
      0.086   12.3   0.1        2.3    7.6   0.0    2.2  2  PhoH          PhoH-like protein
       0.11   12.6   0.0       0.21   11.7   0.0    1.4  1  sCache_3_2    Single cache domain 3
       0.11   12.2   0.0        0.5   10.1   0.0    2.0  3  AAA_30        AAA domain
       0.13   11.6   0.0       0.25   10.7   0.0    1.5  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.15   12.3   0.1        1.4    9.2   0.1    2.2  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
       0.19   11.5   0.1       0.46   10.3   0.1    1.6  1  AAA_29        P-loop containing region of AAA domain
       0.24   11.9   2.2       0.36   11.3   0.4    2.0  2  AAA_23        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.0   3.5e-39   2.7e-36       2     135 ..      34     174 ..      33     176 .. 0.92

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 3.5e-39
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 +n++l++++ge + ++G++G+GK+t+l+l+agl++ ++G+i+l+++d+++   +  ++++ +++q   lfp++tv en             e + ++ +
  CTQ27523.1  34 DNLNLTINNGEFLTLLGPSGCGKTTVLRLIAGLENVDSGRIHLEDHDITH--VPAENRHVNTVFQSYALFPHMTVFENvafglrmqktpaaEITPRVMD 130
                 89************************************************..99*****************************9988766666666778 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135
                 al+ ++l+ +++++     ++LSgGq+qrva+ara+++kp+llllDE 
  CTQ27523.1 131 ALKMVQLEAFAQRKP----HQLSGGQQQRVAIARAVVNKPRLLLLDES 174
                 888888777777776....****************************7 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   4.6e-11   3.6e-08       1      76 []     292     372 ..     292     372 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 4.6e-11
      TOBE_2   1 laiRPEklrla...aagganglsGtVedveylGsstryvvelaggqlvvvrqpnadr..dsalapGdtVelswdpddavvl 76 
                 + +RPE+lr++   ++++a+gl G V+++ y G +++ vvel++g+ v+v+   +++  d ++  +++  + w   + vvl
  CTQ27523.1 292 VLLRPEDLRVDeihHNSDADGLIGYVRERNYKGMTLESVVELENGKMVMVSEFFNEDdpDFDHSLDQKMSINWVESWEVVL 372
                 689**********8777778******************************6655554234566699999999999999887 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.7e-05     0.037       3      25 ..      47      69 ..      45     102 .. 0.77
   2 !   10.9   0.0   0.00038      0.29     234     298 ..     145     207 ..     117     211 .. 0.87
   3 ?   -2.0   0.0       3.1   2.4e+03      42      83 ..     322     363 ..     311     375 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.7e-05
      AAA_21  3 vliGpNgsGKSnLLdaldllarl 25
                 l Gp g+GK+++L+++ +l  +
  CTQ27523.1 47 TLLGPSGCGKTTVLRLIAGLENV 69
                699***************99544 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00038
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 +++lS G+++  a++ a+   +   +lll+DE  + L++kl +     lk+l+r  g+ ++++TH+
  CTQ27523.1 145 PHQLSGGQQQRVAIARAVVNKP---RLLLLDESLSALDYKLRKQMQNELKALQRkLGITFVFVTHD 207
                 6788888888866666666555...****************************99**********8 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.1
      AAA_21  42 irkipslldlydpeipfefeieeflsqgvryryglrlersqv 83 
                 +++++ ++    ++++++   e+f++++++++++l+++ s+ 
  CTQ27523.1 322 YKGMTLESVVELENGKMVMVSEFFNEDDPDFDHSLDQKMSIN 363
                 556666677777888888888999999999999999886666 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.068        53      38      54 ..      46      62 ..      39      89 .. 0.84
   2 !   15.8   0.3   9.2e-06    0.0071     108     169 ..     152     213 ..     116     226 .. 0.73
   3 ?    1.4   0.0      0.24   1.9e+02      43      66 ..     332     355 ..     312     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.068
        TniB 38 lllvGdsnnGKtmivek 54
                l l+G+s +GKt++++ 
  CTQ27523.1 46 LTLLGPSGCGKTTVLRL 62
                6799*********9975 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 9.2e-06
        TniB 108 eqqvlrllrel..kvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGteealral 169
                 +qq +++ r++  k+r+L++DE  ++l   ++ ++++ n lk L+++l i++v v  ++  ++ 
  CTQ27523.1 152 QQQRVAIARAVvnKPRLLLLDESLSAL--DYKLRKQMQNELKALQRKLGITFVFVTHDQEEALT 213
                 333344444433389*******98888..778888899***************99766555444 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.24
        TniB  43 dsnnGKtmivekFarlhppekded 66 
                 + +nGK ++v++F +++ p+ d++
  CTQ27523.1 332 ELENGKMVMVSEFFNEDDPDFDHS 355
                 668***********9998887644 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.7   1.6e-07   0.00012       5     129 ..      43     205 ..      40     212 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.6e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee.................................erpevvfvtlpsstsskdllrellralglelka 70 
                   +l++ G+sG+GKTt+lr ++   + ++   +                                 + +  ++++ +   + +    + l+ ++le+ a
  CTQ27523.1  43 GEFLTLLGPSGCGKTTVLRLIAGLENVDSGRIHledhdithvpaenrhvntvfqsyalfphmtvfeNVAFGLRMQKTPAAEITPRVMDALKMVQLEAFA 141
                 6799****************9998876666666889999999998866655555555554443333222222444444444444444555555555555 PP

      AAA_22  71 erlsseell.ealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvG 129
                    + ++l   + ++ + arav   ++ll++DE    l+   ++++ +eL+ l+   + g+++++v 
  CTQ27523.1 142 -QRKPHQLSgGQQQRVAIARAVvnkPRLLLLDESLSaLDyklRKQMQNELKALQR--KLGITFVFVT 205
                 .44444444344444444444478888******9888888667************..9999999985 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.7   2.3e-06    0.0018      26     209 ..      45     219 ..      22     228 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.3e-06
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE.SSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk.lkiekeevsisrrvkrkgeseykingkevtkkev 123
                 f  ++Gp G+GK+ +l  i    G ++  + r +  ++ i++      +++ +v+ +f+        +  e+v    r++++     +i  + +   ++
  CTQ27523.1  45 FLTLLGPSGCGKTTVLRLI---AGLENVDSGRIHLEDHDITH----VPAENRHVNTVFQSYALFpHMTVFENVAFGLRMQKTPA--AEITPRVMDALKM 134
                 5566777777777776666...45444444443333322322....33344444444444333311222333444444433333..4455555555555 PP

                 HHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-.SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xxxx RF
       SMC_N 124 sellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemleka.dklv 209
                  +l + a+ ++++LSgG+++ va+a       v++  l llDe  +aLD k +k++ + lk+ + +    f+ +++++e    + d++v
  CTQ27523.1 135 VQLEAFAQRKPHQLSGGQQQRVAIARA----VVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKlgITFVFVTHDQEEALTMsDRIV 219
                 666566666778********9998754....56666799**********************8887755778888888776655514444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   8.5e-06    0.0066       2      52 ..      47      97 ..      46     222 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8.5e-06
                EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfke 52
                 l Gp G+GKT++ + +a   +v+  +i + +    +v + +++++ +f++
  CTQ27523.1 47 TLLGPSGCGKTTVLRLIAGLENVDSGRIHLEDHDITHVPAENRHVNTVFQS 97
                589***************997666544444444433677777777777765 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   5.1e-06     0.004      34      67 ..      32      65 ..      19     121 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.1e-06
       Rad17 34 wlkadvLesrkkriLLisGPsGCgkstvvkvLsk 67
                 ++   L  ++ + L + GPsGCgk+tv++ ++ 
  CTQ27523.1 32 VIDNLNLTINNGEFLTLLGPSGCGKTTVLRLIAG 65
                55555666666779999************99875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.8e-05     0.022      87     131 ..      30      75 ..      18      94 .. 0.82
   2 ?   -1.1   0.0         2   1.5e+03      60      90 ..     182     212 ..     172     219 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.8e-05
                  HTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  87 kegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  k+ +++l+  +++ ++ +l+G+SG GK+t++  +++ +++  g + 
   CTQ27523.1  30 KTVIDNLNLTINNgEFLTLLGPSGCGKTTVLRLIAGLENVDSGRIH 75 
                  5667888888888899******************998777777765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2
                  -HHHHHHHHHHHHHHTTSEEEE--TTTHTTH CS
  RsgA_GTPase  60 eeeeeleelkeelealgyevllvsaktkegl 90 
                   +++  +elk+  ++lg+++++v  +++e+l
   CTQ27523.1 182 LRKQMQNELKALQRKLGITFVFVTHDQEEAL 212
                  4445578889999999999999987766654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   1.8e-05     0.014      23      45 ..      42      64 ..      31     204 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.8e-05
      AAA_16 23 rpelvllsGesGvGKsslvrell 45
                 +e + l G+sG+GK++++r ++
  CTQ27523.1 42 NGEFLTLLGPSGCGKTTVLRLIA 64
                347899**************987 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00094      0.73      30      50 ..      40      60 ..      26      67 .. 0.88
   2 ?    4.0   0.0      0.04        31     165     188 ..     183     206 ..     105     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00094
      AAA_25 30 lpagelallaGapgtGKttla 50
                +  ge+  l G++g+GKtt++
  CTQ27523.1 40 INNGEFLTLLGPSGCGKTTVL 60
                7789***************97 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.04
      AAA_25 165 vgalvealeriarrtgaavllvhH 188
                  +++ + l+ ++r++g+++++v H
  CTQ27523.1 183 RKQMQNELKALQRKLGITFVFVTH 206
                 38999*****************99 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0019       1.5       4      20 ..      48      64 ..      46      96 .. 0.84
   2 ?    3.4   0.0       0.1        81     131     161 ..     180     209 ..     172     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0019
      AAA_28  4 itGgestGKTtlleaLa 20
                ++G++++GKTt+l+ +a
  CTQ27523.1 48 LLGPSGCGKTTVLRLIA 64
                79***********9888 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
      AAA_28 131 leereaiderlrealrelgipviivpsgdve 161
                  + r+++++ l+++ r+lgi ++ v + d e
  CTQ27523.1 180 YKLRKQMQNELKALQRKLGITFVFV-THDQE 209
                 57799*******************9.77665 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00019      0.15     324     414 ..     149     224 ..     141     241 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETT CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmeey 414
                 SG   q ++i++a+ ++ +llL+DE  sA    +r ++ +                ++ l +klg++ + v+   ++ l+++d++++m++ 
  CTQ27523.1 149 SGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQN---------------ELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDG 224
                 99999999********************987766544444...............445677777777777777777777777777777765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00017      0.13       3      25 ..      48      78 ..      46     144 .. 0.80
   2 ?   -1.8   0.0       5.6   4.4e+03     103     103 ..     208     208 ..     156     267 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00017
      AAA_18  3 ltGtpGvGKttlakeLskrlgf........g 25
                l G++G+GKtt+ + ++ ++++         
  CTQ27523.1 48 LLGPSGCGKTTVLRLIAGLENVdsgrihleD 78
                78**************988755655443331 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.6
      AAA_18 103 p 103
                  
  CTQ27523.1 208 Q 208
                 1 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00035      0.27       3      22 ..      47      66 ..      45      74 .. 0.89
   2 ?   -2.2   0.0       4.7   3.7e+03      61      88 ..     285     316 ..     247     345 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00035
                EEE--SSSSHHHHHHHGGGG CS
       AAA_5  3 lLvGppGtgKselaerlaaa 22
                 L+Gp+G+gK+++ + +a +
  CTQ27523.1 47 TLLGPSGCGKTTVLRLIAGL 66
                69*************99865 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.7
                 ----......G-SEEEEESGGG--HHHHHHHHHH CS
       AAA_5  61 raar......egeilvlDEveraesevlnsLlsl 88 
                 +a++      ++e l++DE++  + + ++ L+ +
  CTQ27523.1 285 EAGQrlhvllRPEDLRVDEIH--HNSDADGLIGY 316
                 444444444455555666666..44444444444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00058      0.45       2      43 ..      43      81 ..      42     107 .. 0.69
   2 ?   -1.9   0.0       3.9   3.1e+03      63      75 ..     164     176 ..     134     205 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00058
      AAA_14  2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderd 43
                ++ l++ G+  +GKTt+l+ ++  +     +   i l+d++ 
  CTQ27523.1 43 GEFLTLLGPSGCGKTTVLRLIAGLEN---VDSGRIHLEDHDI 81
                56789************998885554...4555555555555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.9
      AAA_14  63 ekktylflDEiqe 75 
                 +k ++l+lDE   
  CTQ27523.1 164 NKPRLLLLDESLS 176
                 4778888998654 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0     0.003       2.3      16      48 ..      40      73 ..      25      76 .. 0.76
   2 ?    2.2   0.0      0.13     1e+02      48      91 ..     152     201 ..     145     225 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.003
                HHH-SEEEEE--TTSSTT.HHHHHHHHHHHHTTS CS
        PhoH 16 lkkndivfaiGpaGtGKt.ylavalavealkkkk 48
                +++ ++++ +Gp+G+GKt  l + +++e + +++
  CTQ27523.1 40 INNGEFLTLLGPSGCGKTtVLRLIAGLENVDSGR 73
                4577899**********73578888888887766 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.13
                 S-SEEEEEE-S--T......T----SS---------TTTHHHHHHHTTTS CS
        PhoH  48 kvkriiltrpavea......geelGflpgdleekvdpylrplydaLkdll 91 
                 + +r+ ++r++v+       +e+l +l+ +l+++++  l++l  +L  ++
  CTQ27523.1 152 QQQRVAIARAVVNKprllllDESLSALDYKLRKQMQNELKALQRKLGITF 201
                 55566666666655555558*******************99999887554 PP

>> sCache_3_2  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00026      0.21      10      76 ..     152     222 ..     144     241 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00026
  sCache_3_2  10 leeralalatsvagsrivrvaltd.....rapesglqalvddvrritgvdyvvitDeegrvlahpdpaevgr 76 
                 +++r +a+a++v+ +++   + ++      + ++++q+   +++r +g+++v++t  + + l+ +d+ +v r
  CTQ27523.1 152 QQQR-VAIARAVVNKPRLLLLDESlsaldYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMR 222
                 4444.99999999999994444448766656667777777*****************9*****999876654 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00064       0.5      17      41 ..      42      66 ..      35      93 .. 0.83
   2 ?   -2.1   0.0       3.5   2.7e+03      81      97 ..     153     174 ..     115     204 .. 0.63
   3 ?   -2.4   0.0       4.3   3.4e+03     130     158 ..     283     308 ..     282     343 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00064
      AAA_30 17 gdrvavltGpAGtGKttalkalrea 41
                +  + +l Gp G GKtt+l+ ++ +
  CTQ27523.1 42 NGEFLTLLGPSGCGKTTVLRLIAGL 66
                44588999************99866 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.5
      AAA_30  81 k.....grarlepgtllivDEa 97 
                 +     +ra +++ +ll+ DE+
  CTQ27523.1 153 QqrvaiARAVVNKPRLLLLDES 174
                 1344444444555567777775 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.3
      AAA_30 130 sVeaGgvlrdlveaagigtaeLtevvRqk 158
                 +VeaG+ l+ l++   ++  +++e++  +
  CTQ27523.1 283 AVEAGQRLHVLLR---PEDLRVDEIHHNS 308
                 6888888888864...5556666665554 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00032      0.25      15      88 ..      36     109 ..      28     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00032
  Mg_chelatase  15 leiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkeeekllkrrpfraphhsaska 88 
                   l++++  g  l l+Gp+G+GKt + + +++l    s +  le   i+ v  ++++ +++ +     ph ++ + 
    CTQ27523.1  36 LNLTINNGEFLTLLGPSGCGKTTVLRLIAGLENVDSGRIHLEDHDITHVPAENRHVNTVFQSYALFPHMTVFEN 109
                   556666667799*************9999999888889999999999999888888877777777788877655 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1    0.0018       1.4      61      86 ..     163     188 ..     133     192 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0018
     SbcCD_C  61 epalrlvfLDEAFsklDeesiatlle 86 
                  +++rl++LDE  s lD + ++++ +
  CTQ27523.1 163 VNKPRLLLLDESLSALDYKLRKQMQN 188
                 4579*************999999865 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00059      0.46      15      39 ..      36      60 ..      29      64 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00059
      AAA_29 15 htieidlkgatlltGpsGsGKSTll 39
                  ++i+  ++  l GpsG GK+T+l
  CTQ27523.1 36 LNLTINNGEFLTLLGPSGCGKTTVL 60
                5677775558999**********97 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   0.00046      0.36       9      39 ..      26      63 ..      18      66 .. 0.63
   2 ?   -0.2   0.1       1.5   1.2e+03     176     192 ..     181     197 ..     136     264 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00046
      AAA_23  9 sfrdqe.idF.....skg.ltlItGpNGaGKTTildAi 39
                sf++++ id      ++g +  + Gp G+GKTT+l+ i
  CTQ27523.1 26 SFDGKTvIDNlnltiNNGeFLTLLGPSGCGKTTVLRLI 63
                453333243224455444155699***********988 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.5
      AAA_23 176 eqekekekeleeleeel 192
                 + +k+ ++el++l+++l
  CTQ27523.1 181 KLRKQMQNELKALQRKL 197
                 22333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 2773.97
//
Query:       CTQ27524.1  [L=410]
Description: peptidase T [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-17   63.4   0.7    4.4e-17   62.5   0.7    1.5  1  Peptidase_M20  Peptidase family M20/M25/M40
    3.2e-11   43.1   0.5    8.7e-11   41.7   0.2    1.8  2  M20_dimer      Peptidase dimerisation domain
    4.2e-08   32.6   0.1    9.3e-05   21.6   0.0    2.2  2  Peptidase_M42  M42 glutamyl aminopeptidase
  ------ inclusion threshold ------
      0.017   14.8   0.1      0.032   13.9   0.1    1.5  1  Peptidase_M28  Peptidase family M28
       0.13   12.1   0.0       0.25   11.2   0.0    1.6  1  Alba           Alba


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.7   1.2e-20   4.4e-17      36     206 ..     139     402 ..     129     403 .. 0.82

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 1.2e-20
                    TTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHHTTTCESEEEEEEEESSSBTCHSTETEEEE................ CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
  Peptidase_M20  36 ddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegleerekvdavfelhieepgileagklaigvv................ 115
                    +d+k+g++ ++ al++l++++i   g+i+++f+pdEE+g +Gak++  +   ++++++++ +  ++ g le +++ +  v                
     CTQ27524.1 139 ADDKAGIAEIMTALATLQAKNIP-HGDIRVAFTPDEEVG-KGAKHFDVE---AFDARWAYTVDGGGVGELEFENFNAASVtikivgnnvhpgtakg 229
                    59*******************85.69***********98.***999773...44455544444444444555553333334557799999999999 PP

                    ..................................................................................EEEEEEE.EEESHE CS
                    ..................................................................................xxxxxxx.xxxxxx RF
  Peptidase_M20 116 ..................................................................................kvevell.eggapv 128
                                                                                                      +  +e+   ++   
     CTQ27524.1 230 vmvnalslaarihaevpadeapettegyegfyhltsmkgsvdraemhyiirdfdrkhfearkrkmmesakkvgkglhpdcyiELVIEDSyYNMHEQ 325
                    *****************************************************************************9765533333223444444 PP

                    EECCHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHH..TTTEEEEEEESSGGCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 129 tlndsplvkalaeaaeelfgekvelivsgpggtdarff..agiptvmifgpgsglaHspnEyvdledlekgikvlarlle 206
                    ++ ++++v+++++a+ +    ++++++   ggtd + +   g+p+  +f  g  ++H+ +E+v le +ek+++v++r++e
     CTQ27524.1 326 VIAHPHVVDIARQAMVDC-DIEPQMKPIR-GGTDGAQLsfMGLPCPNLFTGG-YNYHGKHEFVTLEGMEKAVQVIVRIAE 402
                    45589************7.7555555555.9999999988899988556646.9*********************99875 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.4   4.9e+03      15      46 ..     133     161 ..     128     182 .. 0.65
   2 !   41.7   0.2   2.4e-14   8.7e-11       2     105 ..     206     302 ..     205     306 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.4
                 -B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC CS
   M20_dimer  15 gkagHsgapgagaNAieklarllaeledeegd 46 
                 gk + ++  +ag   i + + +la l++++ +
  CTQ27524.1 133 GKTLLGADDKAG---IAEIMTALATLQAKNIP 161
                 555555544555...77778888888888655 PP

  == domain 2  score: 41.7 bits;  conditional E-value: 2.4e-14
                 EB-EEEEEEEEEE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-C....CCCEESSEEEEEEEEEHHHHHHHHHHHH CS
   M20_dimer   2 ghkGlaggkitvkgkagHsg.apgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGs....aknvipdeaeakidiRllpgedpeevle 95 
                 +++++a+++i++ g+++H+g a+g ++NA+ ++ar+ ae +++            ++++ t++++G+    +    +d+ae++++iR  +    e+ + 
  CTQ27524.1 206 ENFNAASVTIKIVGNNVHPGtAKGVMVNALSLAARIHAEVPAD------------EAPETTEGYEGFyhltSMKGSVDRAEMHYIIRDFDRKHFEARKR 292
                 6899***************************************............99999******99999****************777777777777 PP

                 HHHHHHTSCC CS
   M20_dimer  96 eieeilekea 105
                 ++ e ++k++
  CTQ27524.1 293 KMMESAKKVG 302
                 7777666655 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.6e-08   9.3e-05     133     194 ..     139     201 ..     115     239 .. 0.89
   2 !    9.0   0.0   0.00018      0.65     212     291 ..     313     395 ..     287     396 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.6e-08
                    HHHHHHHHHHHHHHHHHCTSS-S.SEEEEEEESTCTTTSHHHHHHHHHH--SEEEEEEEEEE- CS
  Peptidase_M42 133 lDdragvavllellkelkeeele.atvylvatvqEEvGlrGaktsaekikpdiaiavDvtaag 194
                     Dd+ag+a ++++l  l+ ++++  ++ +++t  EEvG ++ ++ +e ++   a  vD + +g
     CTQ27524.1 139 ADDKAGIAEIMTALATLQAKNIPhGDIRVAFTPDEEVGKGAKHFDVEAFDARWAYTVDGGGVG 201
                    4**********************99******************99****99999999987665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00018
                    EEEEETTCCSHHHHHH..HHHHHHHHTT--EEEE...EESSSSSTHHHHHTSTTTSEEEEEEEEEBSTTSTTEEEEHHHHHHHHH CS
  Peptidase_M42 212 irvkDasgiyhpklrk..kllelAkknnipyqle...vlsgggtDAgaihltgegvptalisiptryiHspvevahlddleatvk 291
                    +++ D+++++h+++    +++++A+++ ++  +e      +ggtD++++ +   g p+  + ++  + H++ e ++l+ +e++v+
     CTQ27524.1 313 LVIEDSYYNMHEQVIAhpHVVDIARQAMVDCDIEpqmKPIRGGTDGAQLSFM--GLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQ 395
                    5677777777777654225777777766666555521556788888777766..99999999999**************999876 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   8.9e-06     0.032      28      81 ..     132     182 ..     124     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.9e-06
                    TCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHH CS
  Peptidase_M28  28 rgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkaf 81 
                    +g+++ GAdD A  + ++  la++ a+ +  p+ ++r++f+  EE g  G+k+f
     CTQ27524.1 132 DGKTLLGADDKAGIAEIMTALATLQAK-N-IPHGDIRVAFTPDEEVG-KGAKHF 182
                    566899*****9666666666655554.4.78*************88.588887 PP

>> Alba  Alba
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     7e-05      0.25      24      52 ..     379     407 ..     290     410 .] 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7e-05
                 HTTESEEEEEEETTHHHHHHHHHHHHHHH CS
        Alba  24 nkkeeeVvlkatGraIskAvsvaeilkrr 52 
                 ++k+e+V+l ++ +a++  v++ae    r
  CTQ27524.1 379 HGKHEFVTLEGMEKAVQVIVRIAELTAAR 407
                 789*********************86555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3243.00
//
Query:       CTQ27525.1  [L=373]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   9.5e-104  347.3   0.0   1.1e-103  347.0   0.0    1.1  1  Cupin_4       Cupin superfamily protein
     0.0038   16.9   0.2       0.21   11.3   0.0    2.6  2  Cupin_2       Cupin domain
  ------ inclusion threshold ------
      0.016   14.9   0.0      0.025   14.2   0.0    1.3  1  Cupin_1       Cupin
       0.03   14.1   0.1      0.081   12.6   0.0    1.7  2  Cupin_8       Cupin-like domain
      0.051   13.5   0.1       0.18   11.7   0.0    2.1  2  AraC_binding  AraC-like ligand binding domain


Domain annotation for each model (and alignments):
>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.0   0.0  3.2e-107  1.1e-103       2     319 .]      10     310 ..       9     310 .. 0.98

  Alignments for each domain:
  == domain 1  score: 347.0 bits;  conditional E-value: 3.2e-107
                 HHHHHHTTTTS-EEE--S-CCCCCCHHHHHHHHCCHHCHHCCC.EECTCCEEEEECCCCEEEE-SSB-SCCCHHHHHHCCHCC.CTTEEEEC-HHHC-H CS
     Cupin_4   2 eeFlreyWqkkpllirralpafagllspddLaeLaeeeevearlikgerdkaewkvsrgpleerrlrklpakdwtlLvqgvslwkkavaqLlqpfrfep 100
                  +F+++yWqk+p++++r++++f ++lspd+La+La+e+ev++rl+  +++ ++w+vs+gp+e+  +++l +++w+lLvq+v++w++ +a+L++pfr +p
  CTQ27525.1  10 PDFIERYWQKRPVVLKRGFANFIDPLSPDELAGLAMESEVDSRLV--SHQDGKWQVSHGPFES--YDHLSENNWSLLVQAVNHWHEPSAALMHPFRALP 104
                 69*******************************************..78889***********..********************************** PP

                 HHHHHHHHHHHS-EEEEEEEE-TTBBSS-SEE-SSEEEEEEEEC-EEEEEE-SCCCTTSSSEE--TTCCG--S-SEEEEE-TT-EEEE-TT-EEEEEBB CS
     Cupin_4 101 ewrlddvmesfslvgsnvYatpggsqgvgpHyDdyDVfllQleGrkrWrvykptvpelelkseeplkildefepvedfvLepGDlLYlPrgviHqgvae 199
                 +wr+dd+m+sf        + pgg  gvgpH D+yDVf++Q+ Gr+rWrv++ +vp+++++++++l ++d+fe ++d+ +epGD+LY+P+g++H+g+++
  CTQ27525.1 105 DWRIDDLMISF--------SVPGG--GVGPHLDQYDVFIIQGTGRRRWRVGE-KVPMKQHCPHPDLLQVDPFEAIIDEEMEPGDILYIPPGFPHEGYSL 192
                 ***********........*****..*************************6.********************************************** PP

                 T-CCEEEEEECCEEHCCHHHCHHHHHHHHHHHHHHHCTSCHHCTCGTTTGGGTTS-HHHHHHHHHHHHHHHHHHHCS-HHHHCCHHHHHHHHS----TT CS
     Cupin_4 200 desltlSvglraptaaellesvldllldklpeiderlrdallravqargeidsdsidalaaqlsellrdpalleeflgqlltsssrekdiaqslppiee 298
                 ++sl++Svg+rap+a+el++ ++d++l++  +  +r+ d++ ++++++++i  +++d+l++ +  l+++p+++++++g+++t+s++e d+a+ +pp++ 
  CTQ27525.1 193 ENSLNYSVGYRAPNARELFSGFADYVLQRELGS-QRYADPDVPSRDHPADILPTELDRLRELMLGLINQPEHFKQWFGEFITQSRHELDVAPPEPPYQP 290
                 ********************************9.***************************************************************** PP

                 CCTCCCCTT-ECEESSTTSEE CS
     Cupin_4 299 deledllaedgaelsrlsslr 319
                 de++d+l ++g +l+rl+ lr
  CTQ27525.1 291 DEIYDAL-QQGDTLERLGGLR 310
                 *******.*******998765 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.031   1.1e+02       7      42 ..     118     151 ..     115     153 .. 0.78
   2 !   11.3   0.0     6e-05      0.21      39      56 ..     171     188 ..     165     195 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.031
                 TTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEE CS
     Cupin_2   7 pGesapshrHpgedeffyVleGegelt.vdgeevele 42 
                 pG+  ++h  ++    +++++G+g+ +   ge+v+++
  CTQ27525.1 118 PGGGVGPHLDQYD---VFIIQGTGRRRwRVGEKVPMK 151
                 8888889999999...888888887776667778876 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 6e-05
                 EEEETTEEEEE-TT-EEE CS
     Cupin_2  39 veleaGdsvyfpagtpHr 56 
                  e+e+Gd++y+p+g pH+
  CTQ27525.1 171 EEMEPGDILYIPPGFPHE 188
                 579**************7 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     7e-06     0.025      58     116 ..     131     204 ..     103     225 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7e-06
                 EEEEESEEEEEEEETTSS...................EEEEEEEETTEEEEE-TT-EEEEEEESSSSEEEEEEEESS CS
     Cupin_1  58 ayvlqGegrvgfvvpgng..................nrdfhkklreGdvfvvPaglvhfqynsgdepavaivvfdtn 116
                 ++++qG+gr      g++                  +  ++ ++++Gd++++P+g++h  y+   e+ + ++v   +
  CTQ27525.1 131 VFIIQGTGR-RRWRVGEKvpmkqhcphpdllqvdpfEAIIDEEMEPGDILYIPPGFPHEGYSL--ENSLNYSVGYRA 204
                 566777776.333333333566677777888888844555556***************99998..555555554444 PP

>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.7   6.1e+03     147     165 ..     125     143 ..     122     145 .. 0.88
   2 ?   12.6   0.0   2.3e-05     0.081     211     244 ..     168     200 ..     152     206 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.7
     Cupin_8 147 HkDhyeNlycvvrGrKkft 165
                 H D y+ + ++  Gr++++
  CTQ27525.1 125 HLDQYDVFIIQGTGRRRWR 143
                 99*************9975 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.3e-05
     Cupin_8 211 alevtlnaGevLylPalWfHeVkslaeeplhlav 244
                 +++ ++++G++Ly+P ++ He +sl e+ l+ +v
  CTQ27525.1 168 IIDEEMEPGDILYIPPGFPHEGYSL-ENSLNYSV 200
                 566689***************9999.55566665 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     5e-05      0.18      45      69 ..     173     198 ..     170     256 .. 0.82
   2 ?   -3.6   0.0       2.7   9.6e+03      93     113 ..     345     363 ..     329     364 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5e-05
                   E-TT-EEEE-TTS-EEEEE-TTS.EE CS
  AraC_binding  45 lgpGdlfLlppgepHdyesdsed.gw 69 
                   ++pGd++ +ppg pH+++s ++  ++
    CTQ27525.1 173 MEPGDILYIPPGFPHEGYSLENSlNY 198
                   68****************98864433 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.7
                   TTEEE..E---TTTHHHHHHH CS
  AraC_binding  93 gapllpalledeelaqllral 113
                    + ++   led++++++l al
    CTQ27525.1 345 DHFGD--ALEDPSFLAMLAAL 363
                   22222..66666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2767.70
//
Query:       CTQ27526.1  [L=488]
Description: sensory histidine kinase in two-compoent regulatory system with PhoP [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.6e-86  286.5   0.9    1.1e-85  286.0   0.1    1.6  2  PhoQ_Sensor  PhoQ Sensor
    2.9e-13   50.3   0.0    5.7e-13   49.4   0.0    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
      6e-06   26.1   0.0    1.2e-05   25.2   0.0    1.4  1  HATPase_c_5  GHKL domain
    0.00041   20.7   0.7     0.0015   18.9   0.1    2.2  2  HAMP         HAMP domain
     0.0042   17.1   4.6     0.0079   16.2   0.1    3.0  3  HisKA        His Kinase A (phospho-acceptor) domain
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.027   14.3   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
      0.033   14.1   0.0      0.063   13.2   0.0    1.4  1  HATPase_c_2  Histidine kinase-like ATPase domain
       0.15   12.0   0.0       0.31   11.0   0.0    1.5  1  Suv3_C_1     Suv3 C-terminal domain 1
       0.48   10.9   2.3        8.8    6.8   0.4    2.4  2  Wbp11        WW domain binding protein 11


Domain annotation for each model (and alignments):
>> PhoQ_Sensor  PhoQ Sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.0   0.1   5.5e-89   1.1e-85       1     178 [.      10     188 ..      10     189 .. 0.99
   2 ?   -2.2   0.1       1.6   3.1e+03      88     149 ..     216     279 ..     214     290 .. 0.55

  Alignments for each domain:
  == domain 1  score: 286.0 bits;  conditional E-value: 5.5e-89
  PhoQ_Sensor   1 plslrvrfllataavvlalslsyGlvavvGylvsfdkttyrllrgesnlfyslaqwedgkltievPenldlnsptlvliydekgkllWrqrevpelek 98 
                  plslrvrfllata+vvl+lsl+yG+va+vGy+vsfdktt+rllrgesnlfy+la+we+g +++++Penl+++spt++liyde+gkllW+qr+vp+l k
   CTQ27526.1  10 PLSLRVRFLLATAGVVLVLSLAYGMVALVGYSVSFDKTTFRLLRGESNLFYMLARWENGAIDVDIPENLNMESPTVTLIYDEQGKLLWAQRDVPWLAK 107
                  9************************************************************************************************* PP

  PhoQ_Sensor  99 kikkeWlkkeglyeldtdvktssallknnpeaqkklkkld.ddedeelthsvavnryaateklPaltivvvdtiPqelqks 178
                  +i++eWlk++g++e+++dv++ss+ll+nn+e+q++l++++ + +d+e+thsva+n y+at+k+P+l+ivvvdtiP el++s
   CTQ27526.1 108 RIQPEWLKRNGFHEIEADVDSSSMLLRNNHEIQEQLDAIReQGDDSEMTHSVAINLYPATSKMPQLSIVVVDTIPVELKRS 188
                  ***************************************9788999*********************************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
  PhoQ_Sensor  88 WrqrevpelekkikkeWlkkeglyeldtdvktssallknnpeaqkklkkld..ddedeelthsv 149
                  W+ r +++l+k++++   ++ +  + +t+ + ++ + + n+ ++++ +++d   +  + lths+
   CTQ27526.1 216 WSLRPIESLTKEVRELEEHHREKLNPNTTRELTRLVSNLNRLVRSERERYDkyRTTLTDLTHSL 279
                  5666666666666554433444444444444444444555556666666664444455667765 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   2.9e-16   5.7e-13       2     105 ..     376     475 ..     375     482 .. 0.81

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 2.9e-16
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTT CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgr 100
                  +  +++++ n++dNa k+  +  e++v+ +++  +l+i veD+G+Gip++++  +f++ ++   +++   g G+Gls+++++ve+++Gei   ++  +
  CTQ27526.1 376 EQNDFMEVMGNVLDNACKYCLEFVEVSVRQTTD-SHLHILVEDDGPGIPQSQRRAVFDRGQR---ADTLRPGQGVGLSVAREIVEQYDGEIIAGESLLG 470
                 567899************966555666666644.5*******************99998777...44556799******************99666666 PP

                 EEEEE CS
   HATPase_c 101 Gttft 105
                 G ++ 
  CTQ27526.1 471 GACME 475
                 76655 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   5.9e-09   1.2e-05       3      85 ..     377     462 ..     375     466 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 5.9e-09
  HATPase_c_5   3 dldlcvilgnlLdNAieacskieeekrfIrltvrekk.ksliisieNsyeg....ek....kklesskskkeehGiGlksireivkkykgnl 85 
                  ++d++ ++gn+LdNA   c +      f++++vr++  ++l i +e    g    +     ++ +   + +  +G+Gl+  reiv++y+g++
   CTQ27526.1 377 QNDFMEVMGNVLDNACKYCLE------FVEVSVRQTTdSHLHILVEDDGPGipqsQRravfDRGQRADTLRPGQGVGLSVAREIVEQYDGEI 462
                  79************9888876......678999987736699****997775554223344555566777899*****************86 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   7.3e-07    0.0015       2      51 ..     213     261 ..     212     263 .. 0.90
   2 ?   -1.6   0.0       1.8   3.6e+03       2      21 ..     275     294 ..     275     303 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 7.3e-07
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrL 51 
                  a++ lrP++ L++ +r++ + + ++ l +++  E+ +L+ ++N+++++ 
  CTQ27526.1 213 AAWWSLRPIESLTKEVRELEE-HHREKLNPNTTRELTRLVSNLNRLVRSE 261
                 699*****************9.667779999**************99875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.8
                 HHHTTHHHHHHHHHHHHHHT CS
        HAMP   2 larrilrPLrrLaraarria 21 
                 l++++  PL  + ++ r+++
  CTQ27526.1 275 LTHSLKTPLAVMQSTLRSLR 294
                 57888899999999999887 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.64   1.3e+03      26      49 ..     131     151 ..     128     163 .. 0.77
   2 ?    0.8   0.1      0.26   5.3e+02      48      65 ..     244     261 ..     219     263 .. 0.68
   3 !   16.2   0.1     4e-06    0.0079       6      66 ..     272     329 ..     268     330 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.64
                 HHHC..T-HSSCHHHHHHHHHHHH CS
       HisKA  26 aLkregklteelkeyletiesear 49 
                 +L r   ++ e +e+l+ i+++++
  CTQ27526.1 131 MLLR---NNHEIQEQLDAIREQGD 151
                 6667...67999999999999988 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHHCCHH CS
       HisKA  48 arrldhlvedlLdlsrie 65 
                 +r l++lv++l +l r e
  CTQ27526.1 244 TRELTRLVSNLNRLVRSE 261
                 458888888888888876 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 4e-06
                 HHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   6 lagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 l ++ H L+tPL++++ ++  L+ e     ++ e+  ++ +++ r+++++   L  +++ +
  CTQ27526.1 272 LTDLTHSLKTPLAVMQSTLRSLRGE---KISVDEAEPVMLEQISRISQQIGYYLHRASMRS 329
                 7899******************773...477777778888888888888887777777766 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.4e-05     0.027       9      59 ..     386     436 ..     379     451 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
  HATPase_c_3   9 elvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknalrlats 59 
                   ++dN+     e v+++v +   ++  i +eDdG G+++++ + ++  ++ 
   CTQ27526.1 386 NVLDNACKYCLEFVEVSVRQTTDSHLHILVEDDGPGIPQSQRRAVFDRGQR 436
                  5789999999999*******9999**************9988877766655 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.2e-05     0.063      38     112 ..     382     458 ..     380     468 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-05
  HATPase_c_2  38 EactNavehayleapegpvevrlesdeea.ltvevaDsGpgfdpetlpdpteeep..keslkegGrGlalikglvDev 112
                  E++ N+   a++ +  + vev++++++++ l++ v+D+Gpg + ++++     ++  ++ ++ +G+Gl + +++v+++
   CTQ27526.1 382 EVMGNVLDNACKYCL-EFVEVSVRQTTDShLHILVEDDGPGIPQSQRRAVFDRGQraDTLRPGQGVGLSVAREIVEQY 458
                  788888888999888.66777766666666***********5555444333333335788889999999999998766 PP

>> Suv3_C_1  Suv3 C-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00015      0.31       5      22 ..       4      22 ..       3      24 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
    Suv3_C_1  5 lIqpi.pLSlrdRytFcmA 22
                l+++i pLSlr+R+++++A
  CTQ27526.1  4 LLRHIfPLSLRVRFLLATA 22
                799************9987 PP

>> Wbp11  WW domain binding protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.06   1.2e+02      33      58 ..     130     155 ..     121     170 .. 0.81
   2 ?    6.8   0.4    0.0044       8.8      40      76 ..     222     257 ..     217     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.06
       Wbp11  33 klakkdpdeleeeiekLeelessgkl 58 
                  +  ++ +e++e+++ ++e+  + ++
  CTQ27526.1 130 SMLLRNNHEIQEQLDAIREQGDDSEM 155
                 5677999**********977666555 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0044
       Wbp11  40 deleeeiekLeelessgkldaadkkklekLekelkav 76 
                 ++l +e+++Le  + ++kl+++++++l++L ++l+++
  CTQ27526.1 222 ESLTKEVRELE-EHHREKLNPNTTRELTRLVSNLNRL 257
                 7899******6.566669************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       996  (0.0555525); expected 358.6 (0.02)
Passed bias filter:                      736  (0.0410508); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.37
# Mc/sec: 3951.16
//
Query:       CTQ27527.1  [L=223]
Description: DNA-binding response regulator in two-component regulatory system with PhoQ [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-25   87.6   0.0    9.4e-25   87.0   0.0    1.3  1  Response_reg  Response regulator receiver domain
    1.8e-20   72.8   0.1    3.4e-20   71.9   0.1    1.4  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
     0.0029   18.0   0.0     0.0047   17.3   0.0    1.3  1  FleQ          Flagellar regulatory protein FleQ


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   1.6e-28   9.4e-25       1     111 [.       3     112 ..       3     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 1.6e-28
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+v+D+ l+r+ l+ +l+e g  +v++aed++ea  +l e+ +d+ ++D+ +p+ dGl l+++ r +d +lpv++lta++  +d+ve+l+agadd+
    CTQ27527.1   3 VLVVEDNALLRHHLKVQLQELGH-QVDAAEDAREADYYLGEHLPDIAIVDLGLPDEDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDY 98 
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   ++Kpf++ee+ +++
    CTQ27527.1  99 VTKPFHIEEVAARM 112
                   ********998775 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.1   5.6e-24   3.4e-20       1      77 []     145     220 ..     145     220 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 5.6e-24
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  +++++lt+ e+ ++e+L++n+g+vvs++ L+ +++++ e  +++t+dv + rLRkk++++   +++I tvrg+GY +
   CTQ27527.1 145 DQPIKLTAFEYTIMETLIRNRGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAE-YPQDVITTVRGQGYLF 220
                  589********************************************************4.45689*********86 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.8e-07    0.0047       1      79 [.       2      82 ..       2      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.8e-07
        FleQ  1 kiLvidddaerrrdletiLeFlgeeveavsseel.saaleesssealavilgsvs.sleealealaekdphlPvlllgesd 79
                ++Lv++d+a  r++l++ L+ lg++v a +++   + +l e   ++ +v lg  +    +++++  ++d +lPvl+l+ ++
  CTQ27527.1  2 RVLVVEDNALLRHHLKVQLQELGHQVDAAEDAREaDYYLGEHLPDIAIVDLGLPDeDGLSLIRRWRSHDVSLPVLVLTARE 82
                69**************************9998774666666677777777777776788999999999999****998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1929.95
//
Query:       CTQ27528.1  [L=268]
Description: AraC-like ligand binding domain protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-24   84.7   0.7    8.5e-24   84.0   0.7    1.3  1  AraC_binding  AraC-like ligand binding domain
    7.1e-17   61.5   0.5    1.6e-16   60.3   0.5    1.6  1  HTH_18        Helix-turn-helix domain
    6.4e-09   35.7   0.1    1.1e-05   25.3   0.0    2.4  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,


Domain annotation for each model (and alignments):
>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.7   1.4e-27   8.5e-24       5     135 ..      20     145 ..      18     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 1.4e-27
                   EEEETTSTT-SEEEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG---EEETTEEE..E- CS
  AraC_binding   5 egieagypdhsfpphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegelleriledssilagapllpall 101
                   e+iea + +h+++ph+hd+y i+++++G+++++++g+ +++ pG  + l+p+e+Hd+e+++e+g++yr++y+e++l++ il++ +   ++ +++ l 
    CTQ27528.1  20 ERIEAFFGGHGYEPHRHDTYAIGQTIAGVQSFHYRGGLQHSLPGGTMVLHPDEIHDGEAGTEAGFHYRMVYIEPALIQKILGGRP--LPFIPDG-LS 113
                   577888889*************************************************************************888..4466666.** PP

                   --TTTHHHHHHHHHHHHHHHT-SSTTHHHHHHHH CS
  AraC_binding 102 edeelaqllralfrlleetrsgddllleallyel 135
                    d++l ++ + l+++   t+  ++l++e +ly l
    CTQ27528.1 114 ADPRLRRAAQPLLKAV--TDTFEPLEEEDALYDL 145
                   ****************..*************988 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.5   2.6e-20   1.6e-16       3      80 ..     189     264 ..     187     265 .. 0.94

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 2.6e-20
                 HHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   3 aalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +  g  r++L+r f++ +g++p +y+  +Rl+ +r+++ + +g  + +iA+++GF+d+s+++r f  +fg++P++++r
  CTQ27528.1 189 QVSGRDRWSLSRDFRTLYGTSPWRYVMMRRLDFCRQRM-R-AGERLVDIAADAGFADQSHMTRQFISRFGLSPGRWLR 264
                 5678889******************************9.4.8**********************************98 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00044       2.6       6      40 ..     179     213 ..     174     215 .. 0.84
   2 !   25.3   0.0   1.9e-09   1.1e-05      10      42 .]     231     264 ..     223     264 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00044
                 SCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHH CS
    HTH_AraC   6 stnltiediAdelgfSrsyFsrlFkketGmtPsqy 40 
                 ++++t++ +++  g +r  +sr F+  +G +P  y
  CTQ27528.1 179 MQDMTLDTLSQVSGRDRWSLSRDFRTLYGTSPWRY 213
                 5778888888888889999*************655 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 1.9e-09
                 -HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  10 tiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 ++ diA+ +gf ++s+++r+F +++G +P  +++
  CTQ27528.1 231 RLVDIAADAGFaDQSHMTRQFISRFGLSPGRWLR 264
                 688****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2058.39
//
Query:       CTQ27529.1  [L=120]
Description: Cupin domain protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-12   45.7   0.7    6.1e-12   45.1   0.5    1.3  1  Cupin_2          Cupin domain
    6.8e-05   22.8   0.0    8.8e-05   22.4   0.0    1.2  1  AraC_binding     AraC-like ligand binding domain
    0.00013   21.6   0.0    0.00019   21.0   0.0    1.3  1  Cupin_1          Cupin
    0.00013   21.8   0.0    0.00018   21.3   0.0    1.2  1  EutQ             Ethanolamine utilisation protein EutQ
    0.00029   20.7   0.1    0.00033   20.6   0.1    1.1  1  MannoseP_isomer  Mannose-6-phosphate isomerase
    0.00032   20.3   0.1    0.00054   19.6   0.1    1.3  1  Cupin_3          Protein of unknown function (DUF861)
    0.00042   20.2   0.1    0.00081   19.3   0.0    1.6  2  Cupin_7          ChrR Cupin-like domain
      0.004   17.3   0.1     0.0049   17.1   0.1    1.2  1  ARD              ARD/ARD' family
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.013   15.2   0.1    1.1  1  Cupin_6          Cupin
      0.039   12.7   0.0       0.04   12.6   0.0    1.1  1  HgmA             homogentisate 1,2-dioxygenase
      0.051   12.7   0.0      0.064   12.4   0.0    1.1  1  DUF4437          Domain of unknown function (DUF4437)


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.5   3.7e-15   6.1e-12      11      67 ..      40      96 ..      36      99 .. 0.89

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 3.7e-15
                EEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEE CS
     Cupin_2 11 apshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparl 67
                + +h+Hp++de+++V+eG +++   +  v ++aG+++++p+g++H+   ++++ + l
  CTQ27529.1 40 FIWHSHPETDETLMVVEGVLRVDFRDGHVLVKAGEMIVVPRGVEHKTSAETEAKLML 96
                569********************77777********************999766655 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   5.4e-08   8.8e-05      16      74 ..      40      97 ..      31     109 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 5.4e-08
                  EEEETT-.SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEE CS
  AraC_binding 16 fpphvhd.eyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwl 74
                  f +h h+ + +   v+eG+ r+ ++++++ +++G+++ +p+g+ H   +++  + +++ +
    CTQ27529.1 40 FIWHSHPeTDETLMVVEGVLRVDFRDGHVLVKAGEMIVVPRGVEHKTSAET--EAKLMLI 97
                  6778888655778899********************************999..5555555 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.2e-07   0.00019      48     107 ..      42      94 ..      26     109 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.2e-07
                 EEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEESSSSE CS
     Cupin_1  48 PhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsgdepa 107
                  h hp + e + v++G +rv        +rd h  +++G+++vvP+g+ h + + +++++
  CTQ27529.1  42 WHSHPETDETLMVVEGVLRVD-------FRDGHVLVKAGEMIVVPRGVEHKTSAETEAKL 94 
                 699****************43.......3688889***************9999865444 PP

>> EutQ  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.1e-07   0.00018      94     143 ..      47      96 ..      36      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.1e-07
        EutQ  94 nydeidyvieGrldvlidGrkvvaeaGdviliPkgskiefsvtdeakfly 143
                 + de  +v+eG l v +   +v  +aG++i++P+g + + s   eak++ 
  CTQ27529.1  47 ETDETLMVVEGVLRVDFRDGHVLVKAGEMIVVPRGVEHKTSAETEAKLML 96 
                 569999*********988888999********************999875 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   2.1e-07   0.00033      55     134 ..      21      98 ..       8     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.1e-07
  MannoseP_isomer  55 evldegeryqvkritvkPgeklslqkhhhraehWvvvkGtakvtvddevlllkenestyiplgaihrlenpGkiplelie 134
                      +v+ e + yq k++ +     +  + h    e  +vv+G+ +v   d  +l+k+ e + +p g+ h+     + +l lie
       CTQ27529.1  21 KVVAEMNDYQFKIVRI--VGDFIWHSHPETDETLMVVEGVLRVDFRDGHVLVKAGEMIVVPRGVEHKTSAETEAKLMLIE 98 
                      5677778888887655..56788999****************************************************99 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   3.3e-07   0.00054      19      65 ..      42      87 ..      37      96 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.3e-07
                EEECESSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTEEECCC CS
     Cupin_3 19 frltyeedEfcyileGevkvtpeggetvelraGDlvvlpkglsgtwd 65
                ++ + e+dE+  ++eG  +v   +g  v ++aG ++v+p g + ++ 
  CTQ27529.1 42 WHSHPETDETLMVVEGVLRVDFRDG-HVLVKAGEMIVVPRGVEHKTS 87
                889999****************666.688************966554 PP

>> Cupin_7  ChrR Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     5e-07   0.00081      29      87 ..      34      95 ..      17      99 .. 0.79
   2 ?   -2.9   0.0         4   6.5e+03      41      50 ..     106     115 ..     101     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5e-07
                EEE-TTEE---EE-TT-EEEE.EEEEE....EEETTEEEETTEEEEE-TT-EE--EESS-EEEE CS
     Cupin_7 29 vryapgsafsahkHpggeeil.VLeGv....fsdeegdypaGsylrnppgsshapvseeGctif 87
                vr+     f +h+Hp+++e+l V+eGv    f+d +   +aG+ +  p+g +h+  +e+++ ++
  CTQ27529.1 34 VRIV--GDFIWHSHPETDETLmVVEGVlrvdFRDGHVLVKAGEMIVVPRGVEHKTSAETEAKLM 95
                5544..4699******98876477886333377888888******************9999876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4
                 E-TT-EEEEE CS
     Cupin_7  41 kHpggeeilV 50 
                  H+gge + V
  CTQ27529.1 106 GHEGGERTAV 115
                 6999998765 PP

>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1     3e-06    0.0049      81     141 ..      37      92 ..       6      97 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3e-06
         ARD  81 lekFfeEhlhedeeirliveGtgyFdvrskdeawirvlvekGDLivlPagiyhrFtltedn 141
                 +  F   ++ e +e  ++veG     v  +d++   vlv++G++iv+P g+ h   ++++ 
  CTQ27529.1  37 VGDFIWHSHPETDETLMVVEGV--LRVDFRDGH---VLVKAGEMIVVPRGVEHKTSAETEA 92 
                 5556666666677888888874..555555654...78***************87776665 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   8.2e-06     0.013      36      97 ..      51     109 ..      30     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.2e-06
     Cupin_6  36 lhvvlrGscwlidpasgepvrLsagdvvllpggephvladspgtaplaviealgeasglgeg 97 
                  ++v++G +++   + g  v ++ag+++++p+g +h  + +++ a+l +ie+ g  ++ +eg
  CTQ27529.1  51 TLMVVEGVLRVDFRD-G-HVLVKAGEMIVVPRGVEHKTSAETE-AKLMLIEPRGVLNTGHEG 109
                 57899******9545.2.49******************65555.677788887555544444 PP

>> HgmA  homogentisate 1,2-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.5e-05      0.04     145     193 ..      49      94 ..      11     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.5e-05
                 SEEEEEEEEES-EEEEETTEEEEE-TTEEEEE-TT--EEEE-S.SSEEE CS
        HgmA 145 dGellivpqkGelelvtelGrlkvepgeiaviprGvrfkveledeearG 193
                 d  l++v  +G l++    G++ v++ge++v+prGv++k + e  ea+ 
  CTQ27529.1  49 DETLMVV--EGVLRVDFRDGHVLVKAGEMIVVPRGVEHKTSAE-TEAKL 94 
                 4444444..79***************************99877.55555 PP

>> DUF4437  Domain of unknown function (DUF4437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.9e-05     0.064      57     107 ..      49      98 ..      34     103 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.9e-05
                 -EEEEEEESEEEETTEE.....E-TTEEEEE-TT-EEEETTS-EE.EEEEE CS
     DUF4437  57 dyrgvVikGalhnddekaekmWlpkgsywtqPaGevhitaaeetenlayle 107
                 d  ++V++G+l+ d ++  +  + +g   + P+G +h t ae + +l+ +e
  CTQ27529.1  49 DETLMVVEGVLRVDFRD-GHVLVKAGEMIVVPRGVEHKTSAETEAKLMLIE 98 
                 5678***********99.89999***********99999999999898887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 980.60
//
Query:       CTQ27530.1  [L=456]
Description: adenylosuccinate lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-82  275.1   0.0    9.8e-82  274.8   0.0    1.1  1  Lyase_1   Lyase
    5.9e-53  177.9   0.2    2.4e-52  175.9   0.0    2.1  2  ASL_C     Adenylosuccinate lyase C-terminal


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.8   0.0   1.1e-85   9.8e-82       1     305 [.      14     312 ..      14     321 .. 0.97

  Alignments for each domain:
  == domain 1  score: 274.8 bits;  conditional E-value: 1.1e-85
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTT... CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellg... 96 
                 gr+ +k+++l+gif+e ++++fr+++e +++l++l+++aa+++v++  +aa++   ld+++++++ +d+ ++k+i+++++++v++ ++++++e+++   
  CTQ27530.1  14 GRYGDKVSALRGIFSEFGLLKFRVQVE-VRWLQKLAAHAAIKEVPA--FAADANGFLDKIVADFSVEDAERIKTIERTTNHDVKA-VEYFLKEKVAdia 108
                 89***********************55.55****************..*************************************.******9999999 PP

                 HSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTC CS
     Lyase_1  97 ekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllv 195
                 e++++++++h++++s+D+++++++l+lk+a++e++lp++++Lida+k+ a +++dv++++rTh+q+AtP+t+g+  +++++a++++r+ +++l++ +++
  CTQ27530.1 109 ELHAVSEFIHFACTSEDINNLSHALMLKTARDEVVLPYWRKLIDAVKDLATQYRDVPLLSRTHGQPATPSTMGK--EMANVAYRMERQ-YRQLNQVEIL 204
                 **************************************************************************..888999999999.99999999** PP

                 EETTTTTTTSSTTTSCCTHHHHHHHHHH..HHHCST.EESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTS CS
     Lyase_1 196 ellgggtavgtglnadpefaelvakela..kvtglp.vkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiM 291
                 ++++g++++++++ a+++  e+ +++++  +vt+l+ +++p+++ +++++D+++el++++++++t L++f++D++++++  +++++++++++e+GSS+M
  CTQ27530.1 205 GKINGAVGNYNAHIAAYP--EVDWHQFSeeFVTSLGiQWNPYTT-QIEPHDYIAELFDCIARFNTILIDFDRDVWGYIA--LNHFKQKTIAGEIGSSTM 298
                 *****************9..9*******999**********999.**********************************..****************** PP

                 TTTEBTHHHHHHHH CS
     Lyase_1 292 PgKvNPvqlElltg 305
                 P+KvNP+++E+  g
  CTQ27530.1 299 PHKVNPIDFENSEG 312
                 **********9655 PP

>> ASL_C  Adenylosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.27   2.5e+03      73      96 ..      80     103 ..      67     114 .. 0.80
   2 !  175.9   0.0   2.7e-56   2.4e-52       1     115 []     331     445 ..     331     445 .. 1.00

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.27
                 HHHHHHHTTS---HHHHHHHHHCS CS
       ASL_C  73 eklkeltrgkkitkeslkefiesl 96 
                 e++k++ r+++ + ++++ f+++ 
  CTQ27530.1  80 ERIKTIERTTNHDVKAVEYFLKEK 103
                 889999999999999999888875 PP

  == domain 2  score: 175.9 bits;  conditional E-value: 2.7e-56
                 -STT--TCHHHHHTTCHHHHHHHHHHHHHHHHHHCCEEE-HHHHHHHHHT-GGGGHHHHHHHHHHTT-TTHHHHHHHHHTTS---HHHHHHHHHCS-S- CS
       ASL_C   1 SrlQRDLtdStvlRnlgvalahslialksllkglsklevneealaedLdenwevlaEaiqtvlrregiekpYeklkeltrgkkitkeslkefieslevs 99 
                 Sr+QRDLtdStvlRnlgv+++++lia++s+lkg+skle+n+++l ++Ld+nwevlaE+iqtv+rr+giekpYeklkeltrgk++++e +k+fi+sl+++
  CTQ27530.1 331 SRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGISKLELNQDRLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDSLALP 429
                 9************************************************************************************************** PP

                 HHHHHHHHC--CCC-- CS
       ASL_C 100 eeakeeLkaltpatYi 115
                 ee+k +Lka+tpa+Yi
  CTQ27530.1 430 EEEKVRLKAMTPANYI 445
                 ***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3591.17
//
Query:       CTQ27531.1  [L=213]
Description: putative inner membrane protein; lambda lysogenization regulator, UPF0274 family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-74  249.9   0.4    2.1e-74  249.7   0.4    1.0  1  DUF489    Protein of unknown function (DUF489)


Domain annotation for each model (and alignments):
>> DUF489  Protein of unknown function (DUF489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.7   0.4   1.2e-78   2.1e-74       1     191 [.       7     199 ..       7     200 .. 0.98

  Alignments for each domain:
  == domain 1  score: 249.7 bits;  conditional E-value: 1.2e-78
                 HHHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHH--S-SSHHHHTTS.GGGGHHHHHHHHHHHHT--S.CHHHHHHHHHHHHHHHHHHHHHSTTH CS
      DUF489   1 drtlALagvlqaaklvqqlArtGqadeealetllkslletdpestedvygg.lanlklGletlleqlekekk.kkdaeltryalsllalerkLsknkea 97 
                 d+tlALagv+qaa+lvqqlA++G++d++al+++l+s++++dpest++v+gg +anl+lGletll +l+++++   +aeltry+lsl+ lerkL+ +k a
  CTQ27531.1   7 DITLALAGVCQAARLVQQLAHQGHCDSDALHVSLNSIIDLDPESTLAVFGGsEANLRLGLETLLGVLNTSSRqGLNAELTRYTLSLMVLERKLAASKGA 105
                 689************************************************9****************998846899********************** PP

                 HHHHHHHHHTTHHHHTTS-TTSHHHHHHHHHHHHHHTGGGSS-----S-CCHHC-HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH CS
      DUF489  98 laklgerieqierqlehfdllhenvlanlasiYsdtiSklgpriqvkGepevLqqeevqnkiRalLLagiRaavLWrqvGGsrwqllfsrkkll 191
                 +++lg+ri  ++rqlehfdl++e++l+++a+iY+d+iS+lgpriqv+G+p+vLq+++vq+k+R++LLagiRaavLW+qvGG r+ql+fsr++l+
  CTQ27531.1 106 MDTLGNRIAGLHRQLEHFDLQSETLLSAMAGIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRSALLAGIRAAVLWHQVGGGRLQLMFSRNRLV 199
                 *******************************************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1858.85
//
Query:       CTQ27532.1  [L=388]
Description: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.5e-144  479.6   0.0   5.2e-144  479.4   0.0    1.0  1  tRNA_Me_trans    tRNA methyl transferase
    3.7e-09   36.1   0.0    3.6e-07   29.6   0.0    2.2  2  NAD_synthase     NAD synthase
    1.5e-07   31.3   0.0    2.1e-07   30.7   0.0    1.3  1  ThiI             Thiamine biosynthesis protein (ThiI)
    0.00016   21.3   0.0    0.00049   19.7   0.0    1.8  1  QueC             Queuosine biosynthesis protein QueC
    0.00022   21.0   0.0    0.00028   20.6   0.0    1.1  1  Asn_synthase     Asparagine synthase
  ------ inclusion threshold ------
      0.076   12.5   0.0       0.17   11.3   0.0    1.6  2  Diphthami_syn_2  Diphthamide synthase
       0.11   12.3   0.2       0.37   10.5   0.1    2.0  2  ATP_bind_3       PP-loop family


Domain annotation for each model (and alignments):
>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  479.4   0.0    2e-147  5.2e-144       1     356 []      26     380 ..      26     380 .. 0.98

  Alignments for each domain:
  == domain 1  score: 479.4 bits;  conditional E-value: 2e-147
  tRNA_Me_trans   1 kkvvvalSgGVDSsvaaallkeqgyevigvflklweeedeegkeccaeedlkdaervaeklgiplevvdfekeykekvfeefleeyeeGrTPnPdv 96 
                    kkv+v++SgGVDSsv+a+ll +qgy+v+g+f+k+wee+d e+  c+a +dl+da++v++klgi+l++v+f+ ey+++vfe fleey++GrTPnPd+
     CTQ27532.1  26 KKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEE-YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 120
                    69***********************************88888.***************************************************** PP

  tRNA_Me_trans  97 lCNkeiKfgallekakeelgadalatGHYarvsleeeknevellrakdkkkDQsyfLsqlskealekllfPlgeltKeevrkiAkeaglavaekkd 192
                    lCNkeiKf+a+le a e+lgad++atGHY+r+     +++++llr+ d +kDQsyfL++ls+e++++ lfP+gel+K++vrkiA+e +l +a+kkd
     CTQ27532.1 121 LCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADV--DGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEELDLITAKKKD 214
                    ********************************987..79********************************************************* PP

  tRNA_Me_trans 193 SqgiCfigkrkfkdflkkyleekeGkiieietgevlGeheGllsyTiGqrkGlkiag....aeeplyVvekdakkntvlvgkgedeealaskklrv 284
                    S+giCfig+rkf+dfl +yl++++Gki++++ ge +G+h+Gl+++T+GqrkGl+i+g    +e+p+yVv+kd+++n+++v++g+d+++l+s  l++
     CTQ27532.1 215 STGICFIGERKFRDFLGRYLPAQPGKILTVD-GEEIGTHQGLMYHTLGQRKGLGIGGtkegSEDPWYVVDKDVENNILIVAQGHDHPRLMSVGLIA 309
                    *******************************.************************98888999******************************** PP

  tRNA_Me_trans 285 kelnwlaeelkekealelevkvrhkqelvkakvelkedetvevkldekvravtpGQaavlYkgdevLGggii 356
                    ++l+w+++e  +  +l+++vk+r++q++++++v+  +++++ev++de+v avtpGQ+av+Y g+++LGggii
     CTQ27532.1 310 QQLHWVNREPLQ-GTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFDEPVAAVTPGQSAVFYLGEVCLGGGII 380
                    *******66666.59*******************************************************98 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.4e-10   3.6e-07      16      82 ..      23      95 ..      10     116 .. 0.76
   2 !    4.1   0.0    0.0082        21     128     167 ..     167     206 ..     155     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.4e-10
                  CTTSEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE--SSS........TTHHHHHHHHHHHHHHTSEEEE---H CS
  NAD_synthase 16 agakgvvlGlSGGvDSslvaalavkalgkenvlalllPssv........sseedvedalalaenlgievktidik 82
                  +  k+v++G+SGGvDSs+ a+l  +     +v +l + +          +   d+ da+a++++lgie +t++ +
    CTQ27532.1 23 ESQKKVIVGMSGGVDSSVSAYLLLQQG--YKVEGLFMKNWEeddgeeycTAAADLADAQAVCDKLGIELHTVNFA 95
                  34599****************987654..79******743311111111445689999************99976 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0082
                   -BHHHHTTT-S-TTTTT--SBETTTTS-HHHHHHHHHHTT CS
  NAD_synthase 128 gnksElvvGyfTkyGDgaadlapiaellKtevkeLakeln 167
                   gnk   +  y+  +  +a  l p++el K +v+++a+el 
    CTQ27532.1 167 GNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEELD 206
                   566667777888899999******************9986 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   8.4e-11   2.1e-07       2      73 ..      24      95 ..      23     149 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 8.4e-11
        ThiI  2 tqgkvlaLlSgGiDSpVaaylllkRGcrvvlvhlknepg.tseeaiekveklaellaeyqtslevklvvvdfk 73
                +q kv++ +SgG+DS V+aylll+ G +v+ +++kn     +ee      +la+  a  +  l ++l +v+f 
  CTQ27532.1 24 SQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEdDGEEYCTAAADLADAQAVCDK-LGIELHTVNFA 95
                6899******************************985431455555666666666666664.67888888885 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.9e-07   0.00049       1     120 [.      27     147 ..      27     228 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.9e-07
                 EEEEE--SSHHHHHHHHHHHHH-SEEEEEEEESS-T.TSHH.HHHHHHHHHHT--.-EEEEE-GGGGGGSCGGG-----------...-----.---TT CS
        QueC   1 kavvllSGGlDSttvlalakkegkevealtfdYgqr.hkke.leaakkiakelgveehkildldllkelggsaLtdeeievpkeeleeeelpn.tfVpa 96 
                 k++v +SGG+DS++ ++l +++g++ve l ++  +    +e   aa+++a+++ v ++  ++l++++  ++    d+  e+  ee++   +pn  +  +
  CTQ27532.1  27 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEdDGEEyCTAAADLADAQAVCDKLGIELHTVNFAAE--YWDNVFELFLEEYKAGRTPNpDILCN 123
                 68999**********************99886555523333256677888888887776666665543333..23444443333444433333145556 PP

                 HHHHHHHHHHHHHHHHT-SEEEE- CS
        QueC  97 RNliflslaasyaealgaeaiiiG 120
                 + + f ++    ae lga+ i++G
  CTQ27532.1 124 KEIKFKAFLEFAAEDLGADYIATG 147
                 666666666666666666666666 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.1e-07   0.00028      16     194 ..      24     213 ..      13     259 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.1e-07
  Asn_synthase  16 advpvGalLSGGlDSSliaalaarqsksplktFsigf.....ee..kgsdeakyakevaehlgtehtelvlteeelldalpdviy.hleepfadrsa 104
                   ++ +v + +SGG+DSS+ a+l+ +q  +    F   +     ee   +  +++ a++v+++lg+e +++ + +e   d    v + +lee  a+r  
    CTQ27532.1  24 SQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWeeddgEEycTAAADLADAQAVCDKLGIELHTVNFAAE-YWD---NVFElFLEEYKAGRTP 116
                   677788889********99999999875555677777655543388999****************999999885.344...444434588889**** PP

  Asn_synthase 105 iplyllsrlak.rkgvkvvLsGeGaDElfgGYpyfykaalsrsrefeklp.......larslrasllarklrklaellelaeardleelaelyrlka 193
                    p  l+ +++k + ++  +    GaD +  G+  +  +   +s+  + l+       + + l+++++a+ l   +el +   ++ +ee ++l ++k+
    CTQ27532.1 117 NPDILCNKEIKfKAFLEFAAEDLGADYIATGHYVRRADVDGKSQLLRGLDgnkdqsyFLYTLSHEQIAQSLFPVGELEKPQVRKIAEE-LDLITAKK 212
                   **********88999999999********99987777777777777777788888888888888888888888888887655555544.44444444 PP

  Asn_synthase 194 s 194
                   +
    CTQ27532.1 213 K 213
                   4 PP

>> Diphthami_syn_2  Diphthamide synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   6.8e-05      0.17       2      75 ..      27     103 ..      26     115 .. 0.81
   2 ?   -3.2   0.0       1.9   4.9e+03       9      38 ..     167     196 ..     165     224 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.8e-05
  Diphthami_syn_2   2 kvavlysGGkDsilaLykalke.sevesLvsvisenkesymfhvvnvhlvella..esvGiplikletaGeeekeve 75 
                      kv+v +sGG Ds ++ y  l++ ++ve L     e+++   + +  ++l +++a  + +Gi+l   + a e  ++v 
       CTQ27532.1  27 KVIVGMSGGVDSSVSAYLLLQQgYKVEGLFMKNWEEDDGEEYCTAAADLADAQAvcDKLGIELHTVNFAAEYWDNVF 103
                      89999***************99999999888777777777788888888777664378****998887777666655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.9
  Diphthami_syn_2   9 GGkDsilaLykalkesevesLvsvisenke 38 
                      G kD  + Ly   +e+  +sL  v + +k 
       CTQ27532.1 167 GNKDQSYFLYTLSHEQIAQSLFPVGELEKP 196
                      778888888888777777777666554444 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00014      0.37       1      67 [.      27      95 ..      27     151 .. 0.74
   2 ?   -2.6   0.0       1.5   3.9e+03      47      69 ..     325     347 ..     293     353 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
                EEEEE--SCHHHHHHHHHHHHHCTTTTT.EEEEEEEE-SSS.TCHHHHHHHHHHHHHHTT-EEEEEE-- CS
  ATP_bind_3  1 kvlvAvSgGlDSmaLllllaklkkklgi.klvaihvdhglr.eeskeeaelvkelckklnikleiekvd 67
                kv+v++SgG+DS +  +ll ++  k +   +     d g    +++++ +  +++c+kl+i+l++ ++ 
  CTQ27532.1 27 KVIVGMSGGVDSSVSAYLLLQQGYKVEGlFMKNWEEDDGEEyCTAAADLADAQAVCDKLGIELHTVNFA 95
                589***********9999998866544323333333444443466777777788888888888777766 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
                 HHHHHHHHHHTT-EEEEEE--HH CS
  ATP_bind_3  47 aelvkelckklnikleiekvdva 69 
                 + +vk+  ++ +i+++++ +d +
  CTQ27532.1 325 RCTVKTRYRQTDIPCTVTALDED 347
                 45688888899999998888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3031.33
//
Query:       CTQ27533.1  [L=152]
Description: bifunctional thiamin pyrimidine pyrophosphate hydrolase and thiamin pyrophosphate hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-17   62.1   0.1    6.8e-17   61.7   0.1    1.1  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.1   3.8e-21   6.8e-17       2     117 ..       4     115 ..       3     128 .. 0.83

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 3.8e-21
                 EEEEEEEEEEETTSEEEEEEESSSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSGCSST CS
       NUDIX   2 lrravgvvllnekgevLlvrrskkpfpg.WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleevegelepn 99 
                 ++++v++v+  ++ ++L+v+++    ++ W  P+G++e++Et+ +AA REl+EEtG++a   +++  +++lap+++p+ +     ++f+ e+ +  +++
  CTQ27533.1   4 PHVTVACVVHAQD-KFLIVEET-INGKAlWNQPAGHLEANETLLQAAERELWEETGIRATPQHFIRMHQWLAPDNTPFLR-----FLFAIELSDLCATE 95 
                 7999999999999.5*****99.666669****************************998889**999999999999997.....77776666666666 PP

                 .STTTEEEEEEEEHHHH.HH CS
       NUDIX 100 .denevsevrwvpleel.lk 117
                  ++ +++ + w++ ee+ ++
  CTQ27533.1  96 pHDSDIDRCLWLSAEEIlNA 115
                 5688899999******9422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1259.95
//
Query:       CTQ27534.1  [L=216]
Description: 23S rRNA pseudouridine synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-14   53.6   0.1    5.8e-13   49.2   0.0    2.6  2  PseudoU_synth_2  RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.094   1.7e+03      19      44 ..      16      41 ..       6      42 .. 0.69
   2 !   49.2   0.0   3.2e-17   5.8e-13       2     160 .]      41     186 ..      39     186 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.094
  PseudoU_synth_2 19 dgsekekettatssraeeekkelklv 44
                       ++++++++ ++ +++++++++k+v
       CTQ27534.1 16 FRKHRVERFSTQQVTRQRKERQPKTV 41
                     45677788888888888888888776 PP

  == domain 2  score: 49.2 bits;  conditional E-value: 3.2e-17
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      ++++nKP++v  q ++        e  ++  ++   +  +++ +RLD++++Gll+l++++++ +kl++  + +++ K Y++ v+g+p +e+ + 
       CTQ27534.1  41 VILFNKPYDVLPQFTD--------EAGRSTLKDFIPVAGVYAAGRLDRDSEGLLVLTNDGALQAKLTQ--PGKRTGKIYYVQVEGEPTPEALTA 124
                      6899999999999999........666666667777889*****************************..*************98887777666 PP

  PseudoU_synth_2  96 kkkiskdtekqegarrkaeeldgkkavtylkvlksgs..........seksakvslveleletGrkhQiRvhlaa 160
                        + ++              +dg    + ++ +++ +          + ks ++ +++++l +Gr++Q+R++ a+
       CTQ27534.1 125 LRDGVT-------------LNDGPTLPAGVELVEEPVwlwprnppirERKSIPTRWLKITLYEGRNRQVRRMTAH 186
                      666555.............566666666677777777777777777788***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.33
# Mc/sec: 1969.34
//
Query:       CTQ27535.1  [L=416]
Description: isocitrate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.3e-118  393.9   0.0   7.2e-118  393.7   0.0    1.0  1  Iso_dh           Isocitrate/isopropylmalate dehydrogenase
  ------ inclusion threshold ------
      0.086   12.8   0.1       0.61   10.1   0.0    2.0  2  tRNA_synt_1c_R1  Glutaminyl-tRNA synthetase, non-specific RNA


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.7   0.0    8e-122  7.2e-118       2     348 .]      29     412 ..      28     412 .. 0.98

  Alignments for each domain:
  == domain 1  score: 393.7 bits;  conditional E-value: 8e-122
                 EEEEEESTTHHHHHHHHHHHHHHHHHHHT...-EEEEEE---THHHHHHHS..SSS-HHHHHHHHHSSEEEEEE---CSSSSSSHHHHHHHHHHHTTEE CS
      Iso_dh   2 iallegdgiGpevveaalkvlkaakekag...lelefeevdvGgaaidetg..eplpeetleaikeadvvllgavgtpkekevrpengLlaLrkeldlf 95 
                 i+++egdgiG +v++a+lkv++aa+eka+   ++++++ev+ G+++++ +g   +lp+etl+ i++++v+++g+++tp+++++r+ n  +aLr+eldl+
  CTQ27535.1  29 IPFIEGDGIGVDVTPAMLKVVDAAVEKAYkgeRKISWMEVYTGEKSTHVYGqdVWLPAETLDLIRDYRVAIKGPLTTPVGGGIRSLN--VALRQELDLY 125
                 89**************************99999*************999886689********************************..********** PP

                 EEEEEEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEET.................TG..GGGEEEEEEEEEHHHHHHHHHHHHHHHHHT CS
      Iso_dh  96 anlrpvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkg.................si.fteevavdtklyseeeieriaraafelAlkr 176
                 ++lrpv+++   + +sp+k+  +e +d+vi+Re+ ++iY+g+e ++++                 +i f+e++++++k+ see+++r++raa+e+A+++
  CTQ27535.1 126 VCLRPVRYY--QGTPSPVKH--PELTDMVIFRENSEDIYAGIEWKADSaeadkvikflrdemgvkKIrFPEHCGIGIKPCSEEGTKRLVRAAIEYAITN 220
                 *********..8*******8..899*********************999***************97789****************************** PP

                 TTSEEEEEESTTTTHHHH.HHHHHHHHHHCC...................TTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTS CS
      Iso_dh 177 gkkkvtlvdKanvlksse.lwrkiveevaee...................eypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGs 255
                 ++++vtlv+K+n++k++e +++++ +++a+e                   + ++i ++++++D++++q++ +p+++dVi+++Nl+GD++SD++aa+vG+
  CTQ27535.1 221 DRDSVTLVHKGNIMKFTEgAFKDWGYQLAREefggelidggpwvkiknpnTGKEIVVKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGG 319
                 **************************************************9************************************************ PP

                 GCC-EEEEEETSS-EEEEESS---CCCTTSS-S-THHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHTSCCHHHCTTS..TCCCHHHHHHHHH CS
      Iso_dh 256 lGllpSaslgekkvaifEavHGsapdiagkdkaNpiavilSaalmLryslgleeaAdkiekAvekvleagivTkDlagea..akevstsefgdav 348
                 +G++p+a++g ++ a+fEa+HG+ap++ag+dk+Np + ilSa++mLr+ +++ eaAd i k++e++++a++vT+D+++ +  ak +++sefgda+
  CTQ27535.1 320 IGIAPGANIG-DECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRH-MQWFEAADLIVKGMEGAIAAKTVTYDFERLMegAKLLKCSEFGDAI 412
                 **********.79***********************************.*******************************999**********97 PP

>> tRNA_synt_1c_R1  Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.081   7.3e+02     110     129 ..      36      54 ..      30      68 .. 0.71
   2 ?   10.1   0.0   6.9e-05      0.61      86     129 ..     173     215 ..     167     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.081
  tRNA_synt_1c_R1 110 GVGvevtpeqieeaVekyie 129
                      G+Gv vtp+ ++  V++ +e
       CTQ27535.1  36 GIGVDVTPAMLK-VVDAAVE 54 
                      9*******8764.3444443 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 6.9e-05
  tRNA_synt_1c_R1  86 daAlkYlskkkeeeideaefekacGVGve.vtpeqieeaVekyie 129
                      d+ +k+l   +e  +++  f ++cG+G++ +++e  ++ V++ ie
       CTQ27535.1 173 DKVIKFL--RDEMGVKKIRFPEHCGIGIKpCSEEGTKRLVRAAIE 215
                      6678999..555679*************84566667777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3580.73
//
Query:       CTQ27536.1  [L=237]
Description: Transcriptional regulator, ArsR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-08   34.2   0.0      3e-08   33.4   0.0    1.4  1  HTH_5     Bacterial regulatory protein, arsR family
    2.7e-08   33.8   0.4    6.7e-08   32.5   0.4    1.7  1  HTH_20    Helix-turn-helix domain
    0.00061   19.6   0.1      0.033   14.1   0.2    2.4  2  MarR_2    MarR family
    0.00063   19.6   0.0      0.012   15.5   0.0    2.3  2  MarR      MarR family
     0.0064   16.4   0.0      0.017   15.0   0.0    1.7  1  TrmB      Sugar-specific transcriptional regulator TrmB
     0.0064   16.3   0.3      0.017   14.9   0.3    1.7  1  HTH_IclR  IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.028   14.0   0.0      0.058   13.0   0.0    1.6  1  HTH_24    Winged helix-turn-helix DNA-binding
      0.038   14.2   0.0       0.66   10.2   0.0    2.4  2  HTH_34    Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.4e-11     3e-08       1      45 [.      29      74 ..      29      75 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.4e-11
                SHHHHHHHHHHTTSS.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  1 dptRlkILklLaege.lcvcelaeelglsqstvShHLkkLreaGLV 45
                d+ R+ IL++L++g   +++el+   ++s st+S HL++L   GLV
  CTQ27536.1 29 DSSRVSILCALMDGRaWTATELSTVAEVSASTTSGHLARLLSNGLV 74
                789**********555*****************************9 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.4     3e-11   6.7e-08       2      55 ..      22      75 ..      21      81 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3e-11
                HHHHHHS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
      HTH_20  2 qiaeALahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLve 55
                ++a+AL++ +R  il aL+++++ ta+el    ++s +t s HL+ L + gLv 
  CTQ27536.1 22 MVASALSDSSRVSILCALMDGRAWTATELSTVAEVSASTTSGHLARLLSNGLVV 75
                79**************************************************96 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   1.5e-05     0.033      10      52 ..      35      75 ..      21      83 .. 0.83
   2 ?    2.8   0.0     0.048   1.1e+02      29      56 ..     186     213 ..     185     215 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.5e-05
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLve 52
                +L aL ++     t++el     +s s++s +l+rL + GLv+
  CTQ27536.1 35 ILCALMDGRA--WTATELSTVAEVSASTTSGHLARLLSNGLVV 75
                5556655543..6****************************95 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.048
                 HHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2  29 rrlglsksavsrilkrLvaaGLverrpg 56 
                 rr++l   a s +   + ++G+++r pg
  CTQ27536.1 186 RRFHLGGDAGSSLMTLFLQKGWITRAPG 213
                 7889999999999999********9986 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.3e-06     0.012       6      47 ..      33      74 ..      30      75 .. 0.91
   2 ?    1.4   0.0      0.14     3e+02      42      50 ..     203     211 ..     196     213 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.3e-06
                HHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR  6 fviLrilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                ++iL+ l +  + + +eL    +vs st++  l rL  +Gl+
  CTQ27536.1 33 VSILCALMDGRAWTATELSTVAEVSASTTSGHLARLLSNGLV 74
                67888888889999**************************98 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.14
                 HHTTSEEEE CS
        MarR  42 ekkGlieRs 50 
                  +kG+i+R 
  CTQ27536.1 203 LQKGWITRA 211
                 79*****95 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.6e-06     0.017      13      62 ..      35      84 ..      31      88 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.6e-06
                HCHHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTTTEE CS
        TrmB 13 vYlaLlklgpatadeiaeelgvprskvYevLrsLedkGlVerekgrpklY 62
                +  aL+     ta+e++  ++v+ s+    L +L++ GlV    + +++Y
  CTQ27536.1 35 ILCALMDGRAWTATELSTVAEVSASTTSGHLARLLSNGLVVCLAQGRHRY 84
                56788888999*****************************9887666655 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   7.5e-06     0.017       8      48 ..      35      74 ..      33      75 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.5e-06
                HHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR  8 iLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyv 48
                iL al  ++  +t +el+  + ++ St++++L+ L   G+v
  CTQ27536.1 35 ILCALMDGRA-WTATELSTVAEVSASTTSGHLARLLSNGLV 74
                6777777777.9***************************99 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.6e-05     0.058       6      47 ..      33      74 ..      28      75 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
      HTH_24  6 rkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                  IL++L++    + +eL+    +S st++ +l rL ++Gl+
  CTQ27536.1 33 VSILCALMDGRAWTATELSTVAEVSASTTSGHLARLLSNGLV 74
                568888888777999*************************98 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00029      0.66       2      47 ..      32      77 ..      31      86 .. 0.92
   2 ?    1.3   0.0      0.18   4.1e+02      58      71 ..     216     229 ..     196     233 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00029
      HTH_34  2 RlavlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYievd 47
                R ++l  L++ +  +++el++  e++++  s hl  L ++g +++ 
  CTQ27536.1 32 RVSILCALMDGRAWTATELSTVAEVSASTTSGHLARLLSNGLVVCL 77
                889**************************************99985 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.18
      HTH_34  58 llriTpeGreafkk 71 
                  +++T+ Gr+a ++
  CTQ27536.1 216 EVQVTDSGRAALSR 229
                 4799*****99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1796.27
//
Query:       CTQ27537.1  [L=130]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-05   22.2   0.7     0.0095   15.7   0.1    2.8  3  ACT       ACT domain
  ------ inclusion threshold ------
      0.079   13.6   0.0          9    7.0   0.0    2.2  2  ACT_4     ACT domain


Domain annotation for each model (and alignments):
>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0037        33       6      50 ..       7      50 ..       2      60 .. 0.78
   2 ?   -2.0   0.0      0.36   3.2e+03      19      30 ..      55      66 ..      55      67 .. 0.82
   3 !   15.7   0.1   1.1e-06    0.0095       9      29 ..      78      98 ..      72     129 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0037
                EEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEE CS
         ACT  6 gvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivv 50
                 + + PG L++ + al+++g+ ++   ++++ d  ++ +f+v+ +
  CTQ27537.1  7 ILSNSPGSLGAMGMALGNNGVGLEGGGVFTTPDA-GHAHFLVEDG 50
                56689***************98887777777775.6666666655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.36
                HHHHHTTSEEEE CS
         ACT 19 galadrgiNids 30
                ++l+++g+ + +
  CTQ27537.1 55 RVLTEAGFTVSN 66
                68999*999976 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 1.1e-06
                SSTTHHHHHHHHHHHTTSEEE CS
         ACT  9 DrPGlLarvfgaladrgiNid 29
                 rPG L++++ +la +giNi 
  CTQ27537.1 78 ERPGELGDIADTLAHNGINIL 98
                79******************5 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0045        41       8      36 ..       3      31 ..       1      59 [. 0.83
   2 ?    7.0   0.0     0.001         9      15      35 ..      78      98 ..      72     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0045
       ACT_4  8 rleveaedrkglLaditqviseekanivs 36
                +++v+ ++++g L+ +  ++ ++++ ++ 
  CTQ27537.1  3 DIHVILSNSPGSLGAMGMALGNNGVGLEG 31
                89******************999998776 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.001
       ACT_4 15 drkglLaditqviseekaniv 35
                 r+g L+di+++++++++ni 
  CTQ27537.1 78 ERPGELGDIADTLAHNGINIL 98
                69999**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1064.52
//
Query:       CTQ27538.1  [L=107]
Description: Antibiotic biosynthesis monooxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-13   51.2   0.0    1.3e-13   50.8   0.0    1.2  1  ABM       Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   7.4e-18   1.3e-13       1      77 [.       1      76 [.       1      77 [. 0.97

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 7.4e-18
                CEEEEEEEEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEETSTTEEEEEEEESSHHHHHHHHTSHHHHHHHH CS
         ABM  1 mviviaeirvkpgqaeafldafaeavesllaeepGclgyellrstedpdevvvieeWeseaaleahlksphfkaahe 77
                m+ v  e  + p ++e +l++ a + + ll++ pG++ +e ++s   p++++++++We+ea++ ++++++ + aa++
  CTQ27538.1  1 MIAVLFEADALPQAQERYLQLAAGLTP-LLSDTPGFIAIERFQSLSTPGKILSLSWWEDEASVANWQQNERHLAAQR 76
                999************************.88*********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 855.97
//
Query:       CTQ27539.1  [L=61]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 475.51
//
Query:       CTQ27540.1  [L=397]
Description: putative oxidoreductase, Zn-dependent and NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-29  102.1   0.2      7e-29   99.9   0.1    2.0  2  ADH_N           Alcohol dehydrogenase GroES-like domain
    2.3e-11   43.4   0.0    4.7e-11   42.4   0.0    1.6  1  ADH_N_assoc     Alcohol dehydrogenase GroES-associated
    2.4e-08   34.0   0.0    3.8e-07   30.1   0.0    2.3  1  ADH_zinc_N      Zinc-binding dehydrogenase
     0.0033   18.5   0.2      0.021   15.9   0.2    2.1  1  ADH_zinc_N_2    Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.019   14.2   0.2       0.14   11.3   0.0    2.5  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      0.025   14.1   0.0       0.14   11.6   0.0    2.2  3  Glu_dehyd_C     Glucose dehydrogenase C-terminus
      0.032   13.5   0.0      0.054   12.7   0.0    1.3  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.047   12.4   0.0      0.065   11.9   0.0    1.2  1  HI0933_like     HI0933-like protein
       0.08   12.2   0.1       0.16   11.2   0.0    1.6  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.083   12.5   0.0       0.18   11.4   0.0    1.5  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.1   3.9e-32     7e-29       2     105 ..      26     150 ..      25     154 .. 0.95
   2 ?   -1.1   0.0      0.95   1.7e+03      51      75 ..     182     207 ..     176     219 .. 0.73

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 3.9e-32
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-.................TT CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlC.................ee 83 
                 ++++++v+a++iCgsDlh+++g k + ++++ i+GHE++Gev+e+g+ev+ +++GdrVv++++i+cg+C  C+ +++ +C                 + 
  CTQ27540.1  26 DDIILRVTATAICGSDLHLYRG-KIPGTHHGDIFGHEFMGEVVEAGSEVTAVRKGDRVVIPFVIACGDCFFCRLQQYAACestnsgqgatlnrkgisPP 123
                 799*******************.9******************************************************************999999988 PP

                 BEETTTS.....S-SSSBSEEEECGGG CS
       ADH_N  84 akllgvs.....ldGgfaeyvvvpekk 105
                 a+l+g+s     ++Gg+aeyv vp+++
  CTQ27540.1 124 AALFGYSdlyggIPGGQAEYVRVPKAN 150
                 888888899999************876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.95
                 CS--TT-EEEE-SEEE-SS.SHHHHT CS
       ADH_N  51 kklkvGdrVvvepliscge.CaaCke 75 
                  ++k G+ V++  + + g  Ca+C +
  CTQ27540.1 182 AEVKPGSSVAIFGAGPVGLlCASCAR 207
                 34899999999877775434777765 PP

>> ADH_N_assoc  Alcohol dehydrogenase GroES-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.6e-14   4.7e-11       1      23 []       1      23 [.       1      23 [. 0.97

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2.6e-14
  ADH_N_assoc  1 MKAVTyqGpkdVrVeeVPDPkIe 23
                 MKA+Ty+Gp++V+V+++PDP +e
   CTQ27540.1  1 MKALTYHGPHHVSVDNMPDPALE 23
                 ********************887 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.1e-10   3.8e-07       1      77 [.     197     279 ..     197     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.1e-10
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHH.TTESEE.EETTTCHHHHHHHHHT.TTSSEEEEEESSC...SHHHHHHHHH CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakk.lGadev.inykeadlverikelt.ggegvdvvfecvG...sgatleaalk 77 
                 +vGl+   +A+  Ga +++ +d+++ +l++a++ +Ga  + +++++ d+ ++i + t g++gvd v+++vG    g+  e+ l+
  CTQ27540.1 197 PVGLLCASCARLNGAeQIFIIDHNDYRLDFAQQrYGAIPInFDHHD-DPAQWIIDNTpGHRGVDSVIDAVGfeaKGSLTETVLS 279
                 79*************99999*************9**7776245545.**********669***********5544445555555 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   1.2e-05     0.021      16     125 ..     251     377 ..     232     385 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
                   HHH-TT-EEEEEES-H.....................HHHH.HHHHHHEEEEEEEEE----...S-EEE-CHHHCTTT-EEEE--GGG...-.-HHH CS
  ADH_zinc_N_2  16 aatggegvDvvldtvg.....................gealleaslkvlpggGrlvsiggpp..lsaallkpakkrkgrsvkyeflfsmkasaqadi 89 
                   +  g++gvD v+d+vg                     g+al ++++++++  G +vs+ g    +  +         g +++  + f m +++ +  
    CTQ27540.1 251 NTPGHRGVDSVIDAVGfeakgsltetvlstlkiegssGKAL-RQCIAAVRR-GGIVSVPGVYagFIHGF------MFGDAFDKGLTFRMGQTHVHAW 339
                   45567999999999999998888888888888888866666.888888877.88888876434322222......2222222222222333346666 PP

                   HHHHHHHHHHHH---..-EEEEEEGGGHHHHHHHHHSS CS
  ADH_zinc_N_2  90 leelaalieeGklrp..vvdrvfpleeaaeAhrylesg 125
                   l +l+alie+G l+p   v++++pleeaa+ ++  e++
    CTQ27540.1 340 LPDLLALIEQGLLTPeeIVTHHMPLEEAARGYQIFEKR 377
                   **************94458888*******988887765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.49   8.8e+02     159     276 ..      64      92 ..      57     106 .. 0.58
   2 ?   11.3   0.0     8e-05      0.14     134     178 ..     177     224 ..     137     312 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.49
                  HHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 159 aalaklgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklglelderg 256
                  ++  ++g+evt v  +dr++                                                                              
   CTQ27540.1  64 GEVVEAGSEVTAVRKGDRVV------------------------------------------------------------------------------ 83 
                  55555555555555555554.............................................................................. PP

                  EEE--TTSBESSTTEEE-GG CS
                  xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 257 givvdeflrtnvpgiyaiGD 276
                             +p + a+GD
   CTQ27540.1  84 -----------IPFVIACGD 92 
                  ...........344444444 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 8e-05
                  HHHCCSS-T..SEEEEES-SHHHHHHHHHHHHHT-E.EEEEESSSSSS CS
                  xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2 134 ealklkllp..krivvvGgGyiGvElAaalaklgke.vtlveardrll 178
                  +a+k ++++   ++++ G+G++G+ +A+ ++  g+e + +++++d  l
   CTQ27540.1 177 QAVKNAEVKpgSSVAIFGAGPVGLLCASCARLNGAEqIFIIDHNDYRL 224
                  3334444437899****************9999988799999998776 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.9e-05      0.14      25      68 ..     180     222 ..     172     280 .. 0.73
   2 ?   -3.5   0.0       3.2   5.8e+03     112     134 ..     289     311 ..     283     316 .. 0.81
   3 ?   -1.1   0.0      0.61   1.1e+03     182     200 ..     354     372 ..     335     385 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.9e-05
  Glu_dehyd_C  25 safewep.esalvlGaGslGLLalalleaeerglervyvlgrrdr 68 
                  +++e +p +s+ + GaG++GLL +   ++  +g e++++++ +d+
   CTQ27540.1 180 KNAEVKPgSSVAIFGAGPVGLLCASCARL--NGAEQIFIIDHNDY 222
                  456666625789***********888876..78999999997664 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.2
  Glu_dehyd_C 112 khafeaiealapnGvaaLlGvpe 134
                  k++ + i a++  G++   Gv++
   CTQ27540.1 289 KALRQCIAAVRRGGIVSVPGVYA 311
                  5566789999999**99999986 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.61
  Glu_dehyd_C 182 ldelvtkvvdldeleeAfe 200
                   +e+vt+ ++l+e+++ ++
   CTQ27540.1 354 PEEIVTHHMPLEEAARGYQ 372
                  4789*********999886 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     3e-05     0.054       2      30 ..     192     220 ..     191     228 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3e-05
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkg 30 
                  I GaGP Gl +a  ++ +g e++ i++ +
   CTQ27540.1 192 IFGAGPVGLLCASCARLNGAEQIFIIDHN 220
                  89************************986 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.6e-05     0.065       2      33 ..     189     221 ..     188     262 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.6e-05
                  SEEEE--SHHHHHHHHHHHHTT.--EEEE-SSS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrg.krVlllekak 33 
                  +v++ G+G+ Gl++A  a+ +g +++ ++++++
   CTQ27540.1 189 SVAIFGAGPVGLLCASCARLNGaEQIFIIDHND 221
                  699***************666616799999986 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.1   5.6e+03     149     162 ..       5      18 ..       3      21 .. 0.84
   2 ?   11.2   0.0   9.1e-05      0.16      26      77 ..     184     238 ..     173     304 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.1
                  EETTEEEEEBSTGG CS
  AlaDh_PNT_C 149 eekgvvhygvanlp 162
                  +++g +h+ v n+p
   CTQ27540.1   5 TYHGPHHVSVDNMP 18 
                  568999*******9 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 9.1e-05
                  B--.-EEEEESTSHHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHH.TTTCECEE CS
  AlaDh_PNT_C  26 vep.akvlviGgGvaGlqAiatakglga.kVtvlDvrparleqles.lgakfvev 77 
                  v+p + v ++G+G +Gl  ++ a+  ga ++ ++D +  rl   ++ +ga  ++ 
   CTQ27540.1 184 VKPgSSVAIFGAGPVGLLCASCARLNGAeQIFIIDHNDYRLDFAQQrYGAIPINF 238
                  44515799****************99995699*******9999988788777766 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0001      0.18       2      41 ..     189     229 ..     188     241 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
                     EEEEE--STTHHHHHHHHHHCT.SEEEEE-S-HHHHHHHCT CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeig.hevigvDideekvdklns 41 
                      ++++G+G vGl +a +    g  ++ ++D ++ + d  ++
      CTQ27540.1 189 SVAIFGAGPVGLLCASCARLNGaEQIFIIDHNDYRLDFAQQ 229
                     589****************999788999****999875544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3017.54
//
Query:       CTQ27541.1  [L=61]
Description: hypothetical protein CH1034_190024 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-19   68.3  16.2    3.7e-10   39.7   5.2    2.7  3  KGG       Stress-induced bacterial acidophilic repeat motif


Domain annotation for each model (and alignments):
>> KGG  Stress-induced bacterial acidophilic repeat motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   5.2     2e-14   3.7e-10       1      21 []      10      30 ..      10      30 .. 0.98
   2 !   39.5   3.2   2.5e-14   4.4e-10       1      21 []      32      52 ..      32      52 .. 0.99
   3 ?   -1.6   0.4      0.21   3.8e+03      16      20 ..      54      58 ..      54      58 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 2e-14
         KGG  1 nFAnDpEkarEIGrKGGqaSh 21
                nFA+D+Eka+E+GrKGGq+S+
  CTQ27541.1 10 NFAEDREKASEAGRKGGQHSG 30
                9*******************8 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 2.5e-14
         KGG  1 nFAnDpEkarEIGrKGGqaSh 21
                nF+nDp++a+E+G+KGGq+Sh
  CTQ27541.1 32 NFKNDPQRASEAGKKGGQNSH 52
                9*******************9 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.21
         KGG 16 GGqaS 20
                GG+ S
  CTQ27541.1 54 GGRKS 58
                89877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                       98  (0.005466); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 527.92
//
Query:       CTQ27542.1  [L=164]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-55  185.5  12.7      7e-55  185.4  12.7    1.0  1  DUF892        Domain of unknown function (DUF892)
  ------ inclusion threshold ------
      0.012   16.1   7.8      0.053   13.9   7.8    2.0  1  Rubrerythrin  Rubrerythrin
       0.02   14.6   2.6      0.031   13.9   1.8    1.6  2  DUF1847       Protein of unknown function (DUF1847)


Domain annotation for each model (and alignments):
>> DUF892  Domain of unknown function (DUF892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.4  12.7   1.2e-58     7e-55       2     159 .]       6     163 ..       5     163 .. 0.97

  Alignments for each domain:
  == domain 1  score: 185.4 bits;  conditional E-value: 1.2e-58
                 .HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T-------.-HHHHTTT-----------THHHHHHH.. CS
      DUF892   2 leelfvdeLrDlyaaEkqllkalpkmakaaespeLkaaleqHleeTegqierLeqvferl.gesasekkcdamegliaegqelieeaaedeslkdaali 99 
                 +e++f++ L D+y+aEkql++ l k+a+aa+s++L+aa++ HleeT+gqier++q++e+  + + +++kc amegli+e++e++e  +e+++++daali
  CTQ27542.1   6 IEDVFIHLLSDTYSAEKQLTRGLAKLARAASSEKLSAAFNAHLEETQGQIERIDQIIEQEsNLKIKRMKCVAMEGLIEEANEVVES-TEKNEVRDAALI 103
                 79*******************************************************975599**********************9.99999******* PP

                 .HHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH. CS
      DUF892 100 aaaqavehyEiAsYgtLialAeqlgekeaaklLeqtleeekatdekltelaeslvnqeaa 159
                 aaaq+vehyEiAsYgtL++lAeqlg+k+aaklL +tleeek+td klt+la   +n++a+
  CTQ27542.1 104 AAAQKVEHYEIASYGTLVTLAEQLGYKKAAKLLAETLEEEKQTDVKLTDLAVGNINKKAE 163
                 *********************************************************985 PP

>> Rubrerythrin  Rubrerythrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   7.8   8.9e-06     0.053      66     128 ..      83     145 ..      12     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.9e-06
                   SBBS-------TTGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH CS
  Rubrerythrin  66 ekvreyaeakpkflttaknLeeaiegayaeeeemyrfyeelaekegneeakklfkklaeaEkk 128
                   e++ e++e ++k ++++  L++a++  ++ e+ +y ++  lae+ g+++a+kl+++  e+Ek+
    CTQ27542.1  83 EEANEVVESTEKNEVRDAALIAAAQKVEHYEIASYGTLVTLAEQLGYKKAAKLLAETLEEEKQ 145
                   5678889999999999999**99999999********************************96 PP

>> DUF1847  Protein of unknown function (DUF1847)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.8   5.1e-06     0.031      11      98 ..      25     113 ..      15     118 .. 0.80
   2 ?    0.4   0.1     0.073   4.4e+02      26      69 ..     101     143 ..      93     156 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.1e-06
     DUF1847  11 eealeeyk.deeekkiakaaaeveaegyakltRveeiiefakrmgykkiGiafCvglleeakalakileakgfevvsviCkvgsvdkee 98 
                 ++ l++ +   +++k+  a +   +e+ +++ R+++iie   ++++k++      gl+eea+++++  e++++  +++i  + +v++ e
  CTQ27542.1  25 TRGLAKLArAASSEKLSAAFNAHLEETQGQIERIDQIIEQESNLKIKRMKCVAMEGLIEEANEVVESTEKNEVRDAALIAAAQKVEHYE 113
                 44444444467777888777777777889*****************************************9999888887777776655 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.073
     DUF1847  26 akaaaeveaegyakltRveeiiefakrmgykkiGiafCvgllee 69 
                 a  aa ++ e+y+ ++    ++++a+++gykk       +l ee
  CTQ27542.1 101 ALIAAAQKVEHYE-IASYGTLVTLAEQLGYKKAAKLLAETLEEE 143
                 4445555555553.345566777777777777655555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1595  (0.088962); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1256.74
//
Query:       CTQ27543.1  [L=168]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-48  163.0   0.6    5.8e-48  162.9   0.6    1.0  1  DUF892         Domain of unknown function (DUF892)
     0.0082   16.5   0.2      0.013   15.8   0.2    1.3  1  HrpJ           HrpJ-like domain
  ------ inclusion threshold ------
      0.013   15.5   0.2      0.024   14.6   0.2    1.4  1  HTH_46         Winged helix-turn-helix DNA binding
       0.02   14.8   2.6      0.076   13.0   0.1    2.1  2  Ferritin       Ferritin-like domain
      0.079   11.9   0.0       0.15   11.0   0.0    1.6  2  Peptidase_M30  Peptidase M30


Domain annotation for each model (and alignments):
>> DUF892  Domain of unknown function (DUF892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   0.6   1.6e-51   5.8e-48       4     158 ..       5     156 ..       2     157 .. 0.98

  Alignments for each domain:
  == domain 1  score: 162.9 bits;  conditional E-value: 1.6e-51
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-SS.HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------.-HHHHTTT-----------THHHHHHH...H CS
      DUF892   4 elfvdeLrDlyaaEkqllkalpkmakaaes.peLkaaleqHleeTegqierLeqvferlgesasekkcdamegliaegqelieeaaedeslkdaaliaa 101
                 e+++d+LrD++a+Ekq++++l++ma ++++ p+L+a++eqH++eT++qi+ Le++++r + s s +k d+m++++a gq +++++++de++k+ +   +
  CTQ27543.1   5 EHYHDWLRDAHAMEKQAESMLESMAGRIDNyPDLRARIEQHVNETKRQITVLEEILDRNEISRSVIK-DSMSKMAALGQSIGGMFPSDEIVKGSI---S 99 
                 89*****************************************************************.***************************...* PP

                 HHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      DUF892 102 aqavehyEiAsYgtLialAeqlgekeaaklLeqtleeekatdekltelaeslvnqea 158
                 ++ +e++EiA+Y++L+a+Ae++g++     +e++l+ee++++++l+++++++++q++
  CTQ27543.1 100 GYVFEQFEIACYTSLLAAAEKAGDTASIPAIEAILAEEREMADWLIKHIPQTTEQFL 156
                 *****************************************************9975 PP

>> HrpJ  HrpJ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   3.6e-06     0.013      44      98 ..      17      69 ..       3      83 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.6e-06
                TT-HHHHHHHHS-TT..--HHHHHHHHHHH--SHHHHHHHHHHHHHHS-GGGHHH CS
        HrpJ 44 aeeklkeLrkllksgqlsssaqllalleslfgDpsdqllaLrallrkgrplsael 98
                +e++++ + + ++ +  ++ ++l+a+ e++ ++ ++q+ +L ++l + ++ s++ 
  CTQ27543.1 17 MEKQAESMLESMAGR-IDNYPDLRARIEQHVNETKRQITVLEEILDR-NEISRSV 69
                566999999999876.*****************************99.7766654 PP

>> HTH_46  Winged helix-turn-helix DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   6.8e-06     0.024      15      46 ..      45      76 ..      38      82 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.8e-06
      HTH_46 15 lpeelreninvlkyIqkrtnLSrSsimkvLse 46
                  +e++++i+vl+ I +r ++SrS+i   +s+
  CTQ27543.1 45 HVNETKRQITVLEEILDRNEISRSVIKDSMSK 76
                56899*********************887765 PP

>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.5      0.06   2.2e+02      83     137 ..       9      61 ..       2      66 .. 0.74
   2 ?   13.0   0.1   2.1e-05     0.076      96     136 ..     108     148 ..     101     153 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin  83 evleaalehekkvteslrelielaeeegDpatadfledfleeqeehewelealle 137
                 + l++a ++ek++ ++l+ ++   +    p ++  +e+ ++e  +++  le++l+
  CTQ27543.1   9 DWLRDAHAMEKQAESMLESMAGRIDN--YPDLRARIEQHVNETKRQITVLEEILD 61 
                 56777788888888888888888774..477777888888888888888888876 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin  96 teslrelielaeeegDpatadfledfleeqeeheweleall 136
                 ++ +  l + ae++gD a+   +e +l+e+ e +++l +++
  CTQ27543.1 108 IACYTSLLAAAEKAGDTASIPAIEAILAEEREMADWLIKHI 148
                 678999******************************98776 PP

>> Peptidase_M30  Peptidase M30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.44   1.6e+03     166     178 ..       7      19 ..       4      41 .. 0.72
   2 ?   11.0   0.0   4.2e-05      0.15     226     257 ..      94     125 ..      68     161 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.44
  Peptidase_M30 166 ydtwleemtammm 178
                    y++wl ++ am  
     CTQ27543.1   7 YHDWLRDAHAMEK 19 
                    8889999988853 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 4.2e-05
  Peptidase_M30 226 vsGslGGflnrqlGlafyknlltnasstdsva 257
                    v Gs+ G++  q+ +a y++ll  a++++ +a
     CTQ27543.1  94 VKGSISGYVFEQFEIACYTSLLAAAEKAGDTA 125
                    89********************9887654333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1261  (0.070333); expected 358.6 (0.02)
Passed bias filter:                      955  (0.0532657); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 1285.67
//
Query:       CTQ27544.1  [L=295]
Description: putative catalase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-91  306.7   0.0    1.3e-91  306.5   0.0    1.0  1  Mn_catalase   Manganese containing catalase
    9.2e-05   22.3   0.0      0.068   12.9   0.0    2.2  2  COQ7          Ubiquinone biosynthesis protein COQ7
  ------ inclusion threshold ------
       0.11   12.9   0.0        3.7    7.9   0.0    2.2  2  Rubrerythrin  Rubrerythrin


Domain annotation for each model (and alignments):
>> Mn_catalase  Manganese containing catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.5   0.0   2.1e-95   1.3e-91       1     279 [.       1     288 [.       1     293 [. 0.97

  Alignments for each domain:
  == domain 1  score: 306.5 bits;  conditional E-value: 2.1e-95
  Mn_catalase   1 mfvhdKkLqylakpdapdpvlAkklqEllGGqfGElsvalrYlfQgfnirdkekykdLlmdiatEElgHvEliatmiarllegatleqqedveeedev 98 
                  mf+h K+Lqy++++++p+p+lA++l+E++GG++GEl++a rY++Qg++  d+++ kd+lmdiatEEl+H+E+i+t++++l++ga+   +e  e e+e+
   CTQ27544.1   1 MFRHVKQLQYTVRVAEPNPGLANLLLEQFGGPQGELAAACRYFTQGLSDDDPGR-KDMLMDIATEELSHLEIIGTLVGMLNKGAKGALAEGTESEAEL 97 
                  9*****************************************************.******************************************* PP

  Mn_catalase  99 iqsvlggrndsH..aivsglgamlvdsaGvpwsadYivasGnliaDlranlaaEakarlqverlyeltddpgvrdmlsfLlaRelvHqlafekAleel 194
                  ++s++ ++ndsH  ++++g+g+ l++saGvpw+a+Yi+++G+++aDlr+n+aaEa+a++++erl+++tddpgv+d+l fL++Re +Hql+fekAl+++
   CTQ27544.1  98 YRSLTANGNDSHitSLLYGGGTPLTNSAGVPWTAAYIDTIGEPTADLRSNVAAEARAKIVYERLINVTDDPGVKDALAFLMTREAAHQLSFEKALQSI 195
                  ************999*********************************************************************************** PP

  Mn_catalase 195 eeeetkvvPvtfakklekqevarkllnlsegeestegrwakgealdevealevvketkegaaipeL...............ksaPmisrntflelakr 277
                  +++       + +k     e+a++++n+seg  + +g+w++++++d+v+++++  ++++g+a++ L               +s+P+ ++ t++el+++
   CTQ27544.1 196 RNNY------PPGKLPPISEYANTYYNMSEGG-EVRGSWNSDKHFDYVKDPQPGVDGGDGSASVGLtpeqealckamlkrtQSDPQGDPLTGAELGAG 286
                  ***9......88999999************96.589******************************************999999*9999999999887 PP

  Mn_catalase 278 lk 279
                   +
   CTQ27544.1 287 KQ 288
                  65 PP

>> COQ7  Ubiquinone biosynthesis protein COQ7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0007       4.2      12      56 ..      34      76 ..      32      82 .. 0.91
   2 !   12.9   0.0   1.1e-05     0.068       6      59 ..     144     195 ..     141     211 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0007
        COQ7 12 GElgAvaiYkgqlavlakkdpelkpllkemleqEkeHlatfeell 56
                GEl+A + Y  q +    +dp  k++l +++++E +Hl+++ +l+
  CTQ27544.1 34 GELAAACRYFTQGLS--DDDPGRKDMLMDIATEELSHLEIIGTLV 76
                9*********99988..899999****************998876 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.1e-05
        COQ7   6 lRvdhaGElgAvaiYkgqlavlakkdpelkpllkemleqEkeHlatfeellker 59 
                 lR + a E  A+ +Y+  + v  ++dp +k+ l+  ++ E+ H   fe+ l++ 
  CTQ27544.1 144 LRSNVAAEARAKIVYERLINV--TDDPGVKDALAFLMTREAAHQLSFEKALQSI 195
                 89*******************..7************************999875 PP

>> Rubrerythrin  Rubrerythrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.026   1.5e+02      29      72 ..      52      95 ..      34     106 .. 0.72
   2 ?    7.9   0.0   0.00063       3.7       5      59 ..     146     198 ..     143     219 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.026
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHH.B.SSBBS--- CS
  Rubrerythrin 29 pqiaelFeelAeeEreHakilnklleklepelelevkekvreya 72
                  p  + ++ ++A eE  H +i+  l++ l+++ +    e + ++a
    CTQ27544.1 52 PGRKDMLMDIATEELSHLEIIGTLVGMLNKGAKGALAEGTESEA 95
                  55577788899999999999999988888887744555555554 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00063
                   HHHHHHHHHHHHHHHHHHCHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHCSTT CS
  Rubrerythrin   5 kAiagEssarrlYkelaekakegypqiaelFeelAeeEreHakilnklleklepe 59 
                    ++a+E  a  +Y+ l   ++   p ++ ++  l   E+ H+  ++k+l++++ +
    CTQ27544.1 146 SNVAAEARAKIVYERLINVTD--DPGVKDALAFLMTREAAHQLSFEKALQSIRNN 198
                   556666666666666666666..66666666666666667766666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2328.04
//
Query:       CTQ27545.1  [L=27]
Description: hypothetical protein CH1034_190028 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (27 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       162  (0.00903564); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 214.77
//
Query:       CTQ27546.1  [L=468]
Description: ubiquinol oxidase subunit I, cyanide insensitive [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.8e-165  549.2  23.2   5.4e-165  549.1  23.2    1.0  1  Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
     0.0019   18.2   0.4     0.0019   18.2   0.4    3.1  3  DUF4235         Protein of unknown function (DUF4235)


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  549.1  23.2    6e-169  5.4e-165       1     418 []       9     437 ..       9     437 .. 0.99

  Alignments for each domain:
  == domain 1  score: 549.1 bits;  conditional E-value: 6e-169
  Cyt_bd_oxida_I   1 laRlqfaltavfHflfvpltlGlalllailetlylrtgdekykklakfwgklfainFavGvvtGivlefqfgtnWseysrfvGdifgapLaiEgl 95 
                     laRlqfa+t++fH+lf+++t+Gla +l++le ++lrt+d++++ l++fw k+fa+nF++Gvv+G+v+++qfgtnWs++s+f+G+i g++L +E+l
      CTQ27546.1   9 LARLQFAFTVSFHILFPAITIGLASYLVVLEGMWLRTRDNVWRSLYNFWLKIFAVNFGMGVVSGLVMSYQFGTNWSGFSQFAGSITGPLLLYEVL 103
                     89********************************************************************************************* PP

  Cyt_bd_oxida_I  96 lAFflEstflglmlfgwdrvskklhllatwlvaigtllSalwIlaanswmqtPvGaelnpdtgraeltdflavlfnpsalakflHtvlaalltaa 190
                     +AFflE+ flg+mlfgw++v++ lh+++t++va+gtl+S++wIla nswmqtP+G+ ++  +g+   +d+la++fnps++++++H+ +aa+l +a
      CTQ27546.1 104 TAFFLEAGFLGVMLFGWNKVPPALHFFTTCMVALGTLVSTFWILASNSWMQTPQGFIIE--NGHLIPQDWLAIIFNPSFPYRLFHMAIAAFLSSA 196
                     **********************************************************7..458999**************************** PP

  Cyt_bd_oxida_I 191 ffvagvsawyllr.rekefarkslkialvvalvaallqallGdlsgkevaetqpaKlAAmeglwetee...aplslfgipdeeeeknefaieiPg 281
                     +fv + +aw+llr +++ + rk+l++a+++al++a++qa++Gd++g +++e+qpaK+AA+eg+we++    +pl lfg+pd e+e++++ +eiP 
      CTQ27546.1 197 MFVGASAAWHLLRgNDSPAIRKMLSMAMWMALLVAPIQAVVGDMHGLNTLEHQPAKIAAIEGHWENRPgeaTPLLLFGLPDMEQERTRYGLEIPA 291
                     *************88888***********************************************9988899*********************** PP

  Cyt_bd_oxida_I 282 llsllatgsldgevkGlndlpkeevPpvalvfwsfrimvglgvlllllallalll.........rwllrllllaiplpfiaveaGWivtevGRqP 367
                     l sl++t+sl+++v+ l+d+pke++P  + vfwsfrimvg+gvl+++l +++++l         r +++++l+++p+++ia+ aGW++te+GRqP
      CTQ27546.1 292 LGSLILTHSLHKQVPALKDFPKEDRPYSPAVFWSFRIMVGMGVLMIALGICSAWLryrrrlyhsRPFQWFALCMGPAGLIALVAGWVTTEMGRQP 386
                     ****************************************************************77***************************** PP

  Cyt_bd_oxida_I 368 WivygllrtadavspvsagevllslilflllylvLlvvevylllklikkgp 418
                     W++ygllrt+davs +s+ ++++sl++f+++y +++ v++y++++likkgp
      CTQ27546.1 387 WVIYGLLRTRDAVSLHSTLQMAISLLVFIVVYCAVFGVGYYYIFRLIKKGP 437
                     *************************************************97 PP

>> DUF4235  Protein of unknown function (DUF4235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.23     2e+03       4      25 ..      63      84 ..      62      88 .. 0.81
   2 !   18.2   0.4   2.1e-07    0.0019      10      58 ..     188     239 ..     181     242 .. 0.84
   3 ?   -0.2   0.1      0.12   1.1e+03       7      24 ..     370     387 ..     368     436 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.23
     DUF4235  4 lglvlglvaGavagkafaavWk 25
                +++++g+v G+v +  f + W 
  CTQ27546.1 63 VNFGMGVVSGLVMSYQFGTNWS 84
                6789999999998888888886 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 2.1e-07
     DUF4235  10 lvaGavagkaf...aavWkkvtgedaPkdpkdedvslrevllfAaisGavla 58 
                 ++a++++++ f   +a+W++++g+d P+  k  ++ ++++ll A i+++v+ 
  CTQ27546.1 188 AIAAFLSSAMFvgaSAAWHLLRGNDSPAIRKMLSMAMWMALLVAPIQAVVGD 239
                 6777777776544389***********9999******************985 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.12
     DUF4235   7 vlglvaGavagkafaavW 24 
                 +++lvaG+v     ++ W
  CTQ27546.1 370 LIALVAGWVTTEMGRQPW 387
                 578999999888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3253.24
//
Query:       CTQ27547.1  [L=336]
Description: Cytochrome d ubiquinol oxidase, subunit II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-96  321.6  37.5    5.9e-96  321.4  37.5    1.0  1  Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.4  37.5  3.3e-100   5.9e-96       2     303 .]       6     325 ..       5     325 .. 0.91

  Alignments for each domain:
  == domain 1  score: 321.4 bits;  conditional E-value: 3.3e-100
  Cyt_bd_oxida_II   2 qliwflligvllagYvvldGfDlGvGillpllakkdeerrlllnsigpvWdgnevWLvtaggalfaaFPlayatlfsglylpllliLlglilRg 95 
                      ++iwf++i+++ ++Y+v+dGfDlG+G+l+ ++ ++ eer++++ns++pvWdgne+WLv++g++lf+aFPlaya++  +l +pl+++L+gli+Rg
       CTQ27547.1   6 SVIWFVIIVFATLMYIVMDGFDLGIGMLFSVV-HDGEERDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVITDALVIPLTAMLIGLIFRG 98 
                      589****************************6.4477********************************************************* PP

  Cyt_bd_oxida_II  96 vafefrskaeskrwrklwdlaffigSllaalllGvalgnllqGvpfdad..eygflsdllnpfallvglllvalflllGalylalktegelqer 187
                      vafefr ka  +++r +wd+af+ gSlla++ +G+++g++++G+ +  d  ++g + d+l+pf+l++gl lv+++lllG ++l++k+eg+lq+r
       CTQ27547.1  99 VAFEFRFKAV-PSHRIFWDYAFAGGSLLATFSQGIVVGAFINGFAVA-DrrFAGSTLDWLTPFNLFCGLGLVVAYLLLGTTWLIMKSEGALQQR 190
                      ********96.579*******************************85.4445587789************************************ PP

  Cyt_bd_oxida_II 188 arrlalvlalvllvllvvvllwtll.................lvllllavlalllavlllrk....kreglaflasaltvllvvlllavslfPy 260
                      +r+l+++++l+l+++++vv++wt+l                 +  +++++l+l+l ++++r      +++ +f++++++++l + +l++s++P+
       CTQ27547.1 191 MRELTRKVLLALMAVIAVVSVWTPLgwryvaerwftlpnffwF--VPVPILVLALSLWIWRLsarpASHARPFILTLGLIFLGFSGLGISVWPN 282
                      **************************************98642..334444443333333332113568889********************** PP

  Cyt_bd_oxida_II 261 llpssltianaasseytlkvmlivalillplvlaytawlyrvf 303
                      ++p+++++++aa++++++ +ml +al+++p++l+ytaw+y+vf
       CTQ27547.1 283 IIPPHISLWDAAAPPSSQVFMLPGALLIIPVILMYTAWSYYVF 325
                      ******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2459.06
//
Query:       CTQ27548.1  [L=65]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       175  (0.00976072); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 536.26
//
Query:       CTQ27549.1  [L=55]
Description: hypothetical protein CH1034_190032 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       121  (0.00674884); expected 358.6 (0.02)
Passed bias filter:                      108  (0.00602376); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 424.19
//
Query:       CTQ27550.1  [L=210]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-07   30.2   0.2    2.4e-06   27.2   0.0    2.5  3  HTH_39         Helix-turn-helix domain
  ------ inclusion threshold ------
       0.14   12.4   0.6       0.26   11.5   0.6    1.4  1  Ribosomal_S18  Ribosomal protein S18


Domain annotation for each model (and alignments):
>> HTH_39  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.23   2.1e+03       7      38 ..      46      77 ..      42      79 .. 0.73
   2 ?   -0.9   0.0      0.16   1.4e+03      28      41 ..     113     126 ..     104     128 .. 0.81
   3 !   27.2   0.0   2.7e-10   2.4e-06       3      70 .]     143     210 .]     141     210 .] 0.96

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.23
      HTH_39  7 laaLrqhgsittleamrelditrlaaRIkeLr 38
                  aL +   +t++e+  +l  +r+++ I + r
  CTQ27550.1 46 RIALLNVDYVTSFELPFRLLLVRAPQLIADVR 77
                55666888899999988888888888777776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.16
      HTH_39  28 trlaaRIkeLrekG 41 
                 +rla+RI++  + G
  CTQ27550.1 113 YRLANRIRRVDATG 126
                 799****9877766 PP

  == domain 3  score: 27.2 bits;  conditional E-value: 2.7e-10
      HTH_39   3 carilaaLrqhgsittleamrelditrlaaRIkeLrekGyeIktervteaterGrthrrVarYsLaee 70 
                 + r+ +aL ++ ++t+l a+  ++ +r aa I +Lr++G++I+t+ v++ +   +t rrV +Y La+e
  CTQ27550.1 143 RERLRQALNAGLPVTALDALFWFGSQRVAADIAQLRRSGMAIVTTEVEVSDNLFNTTRRVPVYRLASE 210
                 67999***********************************************************9975 PP

>> Ribosomal_S18  Ribosomal protein S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   2.9e-05      0.26      22      48 ..     118     144 ..     114     145 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.9e-05
  Ribosomal_S18  22 kIlprriTGlcakhQrklakaIkrARh 48 
                    +I     TGl+a  + ++a++Ik AR+
     CTQ27550.1 118 RIRRVDATGLTAAPYQQIAREIKPARE 144
                    5677789******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1594.17
//
Query:       CTQ27551.1  [L=59]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 493.74
//
Query:       CTQ27552.1  [L=57]
Description: hypothetical protein CH1034_190035 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       204  (0.0113782); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 484.42
//
Query:       CTQ27553.1  [L=228]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-17   63.9   0.0    1.7e-17   63.8   0.0    1.1  1  EAL       EAL domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   9.5e-22   1.7e-17      46     236 ..      46     220 ..       2     222 .. 0.71

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 9.5e-22
                 -CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE-....-CHHCC-CCHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH..H CS
         EAL  46 speeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinl....spasladeefleelrellkqsgpspsrLvleitesellarlealq.ee 139
                 ++ +f +l e+ + la ++r++    + d++        ++++s+n+    s++ l+d+ +++ lr        s++++ lei+e+ +    ++    +
  CTQ27553.1  46 PAFSFSTLTES-DKLALFTRQIELLSVFDFSLV-----DNKPISLNIddllSHFILTDRYLCDFLR--------SCKHIALEINEN-F----HEFIaGR 125
                 22234444444.666666655555555555554.....3567788876666778888888888888........7778*******9.3....3333344 PP

                 HHHHHHC..TT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT- CS
         EAL 140 vlarLra..lGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalialakelgikvvaegVeteeqlealrelgcdlvQGylls 236
                 +l +L++  + + ++lddfg+g +s+ +l r+++d +K+d+++      d+e+   + +l++  + l  +v++eg+ete q ++  ++g   +QG+++ 
  CTQ27553.1 126 ELTALSTlaALCPVWLDDFGRGRTSFPLLERFRFDCVKVDKDYFW----DKENDPALPGLLQSIHTLTGHVIVEGIETEKQKRLITSAGDIIGQGRYWK 220
                 4444444113599*******************************6....466667778888888888889***************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 2008.99
//
Query:       CTQ27554.1  [L=54]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.1   1.3       0.19   11.5   1.3    1.3  1  QLQ       QLQ


Domain annotation for each model (and alignments):
>> QLQ  QLQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.3   1.1e-05      0.19       6      17 ..      24      35 ..      22      36 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.1e-05
         QLQ  6 QlqeLkaQilAf 17
                Ql++L++Q lA+
  CTQ27554.1 24 QLAQLRNQLLAY 35
                ***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 426.48
//
Query:       CTQ27555.1  [L=502]
Description: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-97  327.1   0.0    1.7e-97  326.9   0.0    1.0  1  UbiD      3-octaprenyl-4-hydroxybenzoate carboxy-lyase


Domain annotation for each model (and alignments):
>> UbiD  3-octaprenyl-4-hydroxybenzoate carboxy-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.9   0.0  9.3e-102   1.7e-97       6     405 ..      18     433 ..      12     434 .. 0.93

  Alignments for each domain:
  == domain 1  score: 326.9 bits;  conditional E-value: 9.3e-102
                 CTTSEEEEESEB-TBTHHHHHHHHH........HHHT--EEEEEEBTTB.TT-EEEE-TTS-HCHHHHHHTS-GHHHHHHHHHHHHHS..----EE--G CS
        UbiD   6 kagelvrikeevdpelEiaeiarrv........leeggpallFenvkgkgskfpvltnlfgtrervalalglssleeileklaellepkppippkvves 96 
                 ++++  +++++vdp+ E+a ++r++          + gpa++F+n+kg+ ++ ++l+++ ++r+r al+lg++   +++ ++ +++++  p++p+vv +
  CTQ27555.1  18 HDNQYLETDHPVDPNAELAGVYRHIgaggtvkrPTRIGPAMMFNNIKGY-PHSRILVGMHASRQRAALLLGCE-ASQLALEVGKAVKK--PVAPVVVPA 112
                 57899**************************996678*********977.899******************75.69999999999996..69******* PP

                 CG-GGGSEE.ECCCCC--HHH.S---BSSTTSSS-EEECEEEEEE-TTT.T-EEEEEEEEEEEETTEEEE--TTTHCHHHHHHHHHHCCT--EEEEEEE CS
        UbiD  97 ekapcqeev.vlegddvdLsk.LPvltlwpgDgGpyitlglvitrdpet.gkrnlgiyRmqvldknklglhwqihkggaehlrkakkkggeplpvavai 192
                 ++apcqe++ + ++ d+dL++ LP++t +p D+Gp++ lgl  + dp++ + +++ i+R++v+++++l ++++++++++   +ka+++g +plp+++ +
  CTQ27555.1 113 SSAPCQEQIfLADDPDFDLRTlLPAPTNTPIDAGPFFCLGLALASDPDDaSLTDVTIHRLCVQGRDELSMFLAAGRHIEVFRQKAEAAG-KPLPITINM 210
                 *********9999********9**************************77******************************999999999.9******** PP

                 S--HHHHHHCTS...--TTT-TCHHHHHHHHTS--EEEE-SSSSSEEETT-SEEEEEEEECCEEEECTTTC.......-TTSCEEC--CCEEEEEEEEE CS
        UbiD 193 GvdPaltlaAva...plPeglsElefaGalrgepvelvkcetvdlevpadAEivleGeidpgetapEGPfg.......dhtGyysevrdefpvfkVtai 281
                 G dPa+++ A++   ++P g +El +aGalr++pvelv+  +v+ + +a AEiv+eGe+ pg ++ E++++       ++ Gy+++++++ pv+kV+a+
  CTQ27555.1 211 GLDPAIYIGACFeapTTPFGYNELGVAGALRQRPVELVQGVSVPEKAIARAEIVIEGELLPGVRVREDQHTnsghampEFPGYCGGANPSLPVIKVKAV 309
                 ***********86644589*********************************************9****999*************************** PP

                 EE-TT-EEEE-SSSCCSHHHHCHHHHHHHHHHHHHHCCSTT.EEEEEE-GGGTTTCEEEEECHHHTCCHHHH.HHHHHHCCTTGGC-SEEEEEEETTS- CS
        UbiD 282 thRkdpiypttvvgkppeedallgkalealflpllkkqvpe.vkdvhlpeeggfhllavvsikkrypghakk.vmealwalkqqlsltKlvivvDedvd 378
                 t+R+++i++t+ vg   e+++l+g+++ea++++++++++p  +++v+++ +gg+++l ++++kkr p ++ +  + al+al +  s  K +i+vDedvd
  CTQ27555.1 310 TMRNNAILQTL-VGPGEEHTTLAGLPTEASIWNAVEAAIPGfLQNVYAHTAGGGKFLGILQVKKRQPADEGRqGQAALLALAT-YSELKNIILVDEDVD 406
                 *********99.99999***********************66***********************954444414444446655.4555*********** PP

                 TTSHHHHHHHHHHC--CCCCEEEECCC CS
        UbiD 379 vrdlkevlwaiatrvdpdrDlviiegt 405
                 ++d +++lwa++tr++ d  ++ i+g+
  CTQ27555.1 407 IFDSDDILWAMTTRMQGDVSITTIPGI 433
                 ********************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3865.02
//
Query:       CTQ27556.1  [L=296]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-41  142.5   4.8    1.1e-41  142.5   4.8    1.5  2  LysR_substrate  LysR substrate binding domain
    7.9e-22   77.0   3.8    1.5e-21   76.0   3.8    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0029   17.4   1.7      0.011   15.6   1.7    2.0  1  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.024   14.5   0.4       0.15   11.9   0.4    2.2  2  MarR_2          MarR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.47   2.1e+03     164     195 ..      27      57 ..       8      65 .. 0.67
   2 !  142.5   4.8   2.4e-45   1.1e-41       2     205 ..      87     292 ..      86     296 .] 0.95

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.47
                     CHTTTEEEEEESSTTCEEEEEEEEETTCCCHH CS
  LysR_substrate 164 ladgrlvalplpepplprelylvyrkgrelsp 195
                     +a++ l+  ++++++ +  ++l  r++r+l+ 
      CTQ27556.1  27 IAQPALS-QQIKQLEQRLGVVLFSRANRRLTL 57 
                     4666666.666666666777777777776665 PP

  == domain 2  score: 142.5 bits;  conditional E-value: 2.4e-45
                     TTSCEEEEEEEECCCH.HHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGGS CS
  LysR_substrate   2 gglrgrLrigapptla.ryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLarg 93 
                     +g++grL++g ++++   + lp ll+r+ra  P++el+lv+gd + l ++l++ +lD+ai++ p+  +++ l++rp+ +e+l+l++ ++hpLa+ 
      CTQ27556.1  87 RGEQGRLHLGYVSSAMyDSKLPGLLRRLRADWPGIELSLVQGDVQMLYEALLDLRLDIAIIRAPLasPPDALVVRPFVREKLCLALYQQHPLAGV 181
                     689*******99887779****************************************************************************9 PP

                     SSECGGGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEE CS
  LysR_substrate  94 epvsledLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylv 186
                       ++l+ L+  ++i l+++ g  l + + da+r ag++p+va ++n++ ++++lv+aG+G+al+p sa  ++l+ +++v+++l++  +++el++v
      CTQ27556.1 182 GALNLASLRTDNWISLDDPQGtgLEQVFMDACRVAGFTPQVAQRINDVTSMISLVSAGVGVALVPLSA--RALRLDNVVYIDLQDRLAESELSMV 274
                     9***************7777777*********************************************..7899999********6666****** PP

                     EETTCCCHHHHHHHHHHHH CS
  LysR_substrate 187 yrkgrelspavrafidflr 205
                     y+++  +s+ vr +i +l 
      CTQ27556.1 275 YHRHI-RSAVVRKVISLLN 292
                     ****9.********99986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   3.8   3.4e-25   1.5e-21       1      60 []       3      62 ..       3      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 3.4e-25
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr+lr fv vaee ++ rAAe+L+++qpa+s+qik+LE++lgv Lf R +r+l+LT+aGe
  CTQ27556.1  3 LRALRHFVVVAEELHMHRAAERLHIAQPALSQQIKQLEQRLGVVLFSRANRRLTLTAAGE 62
                799********************************************************7 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.7   2.4e-06     0.011      10      56 ..      13      60 ..       3      63 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.4e-06
                HTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--.TTSHHHHHHHHHH CS
      HTH_30 10 enggnisatAkaLhvHrnTlryRLrrieellgld.lddpddrlaLylA 56
                ++   + ++A++Lh+    l++ ++++e+ lg+  ++++++rl+L +A
  CTQ27556.1 13 AEELHMHRAAERLHIAQPALSQQIKQLEQRLGVVlFSRANRRLTLTAA 60
                56677889************************8835579999999887 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   3.4e-05      0.15      22      48 ..      16      42 ..       3      54 .. 0.85
   2 ?   -0.7   0.0       0.3   1.4e+03      26      41 ..     211     226 ..     203     229 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.4e-05
                EEHHHHHHHHTSSHHHHHHHHHHHHHT CS
      MarR_2 22 ltvgelarrlglsksavsrilkrLvaa 48
                l +   a+rl++ ++a+s+ +k L+++
  CTQ27556.1 16 LHMHRAAERLHIAQPALSQQIKQLEQR 42
                788899******************975 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.3
                 HHHHHHTSSHHHHHHH CS
      MarR_2  26 elarrlglsksavsri 41 
                 + +r  g +++ ++ri
  CTQ27556.1 211 DACRVAGFTPQVAQRI 226
                 78999999***99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2393.82
//
Query:       CTQ27557.1  [L=594]
Description: Diguanylate cyclase (GGDEF) domain-containing protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-44  151.1   0.6    1.4e-43  148.4   0.1    2.3  2  GGDEF         Diguanylate cyclase, GGDEF domain
    4.5e-07   30.1   0.4    3.3e-06   27.4   0.0    2.6  2  HAMP          HAMP domain
    0.00043   20.9   0.0     0.0013   19.3   0.0    2.0  1  GAF           GAF domain
     0.0018   18.6   0.4      0.014   15.7   0.0    2.5  2  GAF_2         GAF domain
  ------ inclusion threshold ------
       0.01   16.2   0.0      0.025   14.9   0.0    1.7  1  GAF_3         GAF domain
      0.041   14.0   0.9       0.18   11.9   0.9    2.3  1  Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
      0.057   13.7   6.9       0.06   13.6   0.1    3.5  3  GGDEF_2       GGDEF-like domain
       0.19   11.8   0.0        3.2    7.8   0.0    2.6  2  COX4          Cytochrome c oxidase subunit IV


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1       0.3   6.7e+02      66     106 ..     210     248 ..     207     268 .. 0.80
   2 !  148.4   0.1   6.2e-47   1.4e-43       1     160 [.     427     583 ..     427     584 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.3
                 HHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHHHHHHHHH CS
       GGDEF  66 LssslrksdlvaRlggdeFaillpetsseeaaelaerirrl 106
                 L  ++r sd+v Rl   + a+  p+ ++   +e+ ++++++
  CTQ27557.1 210 LYPVVRLSDVVQRLASQDYAVETPHFTQ--VDEIGDMAQAI 248
                 6678999**************9999995..47777777654 PP

  == domain 2  score: 148.4 bits;  conditional E-value: 6.2e-47
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a +DslTgL NR +l+e l ++++ a +++++l+ l++d+d+Fk+ind+yGh++GD v+++va++ ++++r+  +++R+gg+eF++llp +++++a + 
  CTQ27557.1 427 ALFDSLTGLRNRHHLDEALHSQMALAVHTHTPLSCLMIDIDHFKTINDRYGHEAGDLVIKSVATIVQRAVRDIGMAFRYGGEEFLVLLPGIDEAGAHQC 525
                 578***********************6679***************************************************************999999 PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSS CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrn 160
                 a+ i +++++++    l ++  +v +siGia++p  ++++ ++ll++Ad aly+aK+ gr+
  CTQ27557.1 526 ASEIYTQVRNMTLRDGLTEI-GQVDVSIGIASYP--QHTQSDSLLRAADAALYRAKELGRS 583
                 99999999999998555555.58**********7..77888****************9997 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.1   2.4e+03      34      52 ..     147     165 ..     123     166 .. 0.56
   2 !   27.4   0.0   1.5e-09   3.3e-06       2      50 ..     205     254 ..     204     256 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.1
                 SSHHHHHHHHHHHHHHHHH CS
        HAMP  34 rDEiGeLarafNaMldrLr 52 
                   E+ ++   ++++++ L+
  CTQ27557.1 147 ETELERMQTQIDRFRQMLE 165
                 3677777777777777775 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 1.5e-09
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCT.TSSSHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpv.sgrDEiGeLarafNaMldr 50 
                 l rr+l P+ rL+++++r+a+ d+ +  p  +  DEiG++a+a++ ++++
  CTQ27557.1 205 LKRRVLYPVVRLSDVVQRLASQDYAVETPHfTQVDEIGDMAQAIRIFREN 254
                 679*******************999998888999**********999986 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     6e-07    0.0013      82     130 ..     364     415 ..     257     417 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 6e-07
                 HHHTTESEEEEEEEEETTEEEEEEEEEE.SSS..CSHHHHHHHH.HHHHHHHH CS
         GAF  82 lenmgirsslvvPlvndgelwGllvlhn.psp..pftreelell.qvladqva 130
                 l +++   sl+vPl+++ge +Gll++ n + +    +r+ lel+ ++l+  +a
  CTQ27557.1 364 LPETHAGQSLCVPLIAQGEAIGLLTFQNvT-AgdAPSRAYLELMaEALGLALA 415
                 33566679********************62.4343388888888888877766 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.52   1.2e+03       6      84 ..     106     186 ..     101     214 .. 0.57
   2 !   15.7   0.0   6.3e-06     0.014      85     137 ..     364     414 ..     334     415 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHS.S...EEEEEEE-TTS-EEEE...EEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-.GGG-S-HHHHH CS
       GAF_2   6 elldlvldelvel.g.aalgyillvdddgglrla...awgeaeeefgaaldrplgeglvgealrtgrpvilnd.leedpdkkglp 84 
                  ll+  l+ + el +  +++  ++  +d     a    +g a e+  ++   +     + + l+++ +v +++ +e+++ ++ l 
  CTQ27557.1 106 ALLQDGLRIANELqDeQQAALAHVARGDAP--AAiavLYGTAYETELERM--QTQIDRFRQMLEHRAAVAIDQaTERSRIWRTLS 186
                 567777777777765555555555442222..112232222222222222..222334667777777777777777766666665 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 6.3e-06
                 HHHHTT--EEEEEE-TTS---EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2  85 aghaglrsflavPlisegrvvGvlnlyankppafdeedlelLeelaeqiaiai 137
                 + + + + +l+vPli++g+ +G l+++       d+  ++ Le++ae +++a+
  CTQ27557.1 364 LPETHAGQSLCVPLIAQGEAIGLLTFQNVTA--GDAPSRAYLELMAEALGLAL 414
                 333444455****************954444..46999999*******99998 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.1e-05     0.025      22     129 .]     308     416 ..     294     416 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
       GAF_3  22 galllldedgnklqvaagwdgkpalse.sld.edsalarralssgevvsepsfae..edglpdraalavPLvagrqviGvlalastkprafdaedlell 116
                 g l++ld+d  +++ +a+w  +pa ++  +   d+ ++rr ls+  v+ ep+  +   + ++ +  l+vPL+a+ + iG+l ++    +  da  +++l
  CTQ27557.1 308 GKLYVLDTDPWQMRCVAQW-LSPAGETtPFSpDDCWAIRRGLSHPPVQGEPDITCyhLPETHAGQSLCVPLIAQGEAIGLLTFQNVTAG--DAPSRAYL 403
                 6789999998899999999.777776556663444445566666666666887774447789999********77********999877..999***** PP

       GAF_3 117 eslArqiataier 129
                 e +A  +++a+++
  CTQ27557.1 404 ELMAEALGLALAN 416
                 **********987 PP

>> Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.9   8.2e-05      0.18     116     169 ..     144     198 ..      12     199 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.2e-05
                   HHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXX.XXXXXXXXXXX CS
  Spore_III_AB 116 slgysdregqlkalelaleeleeeieeareeakkkeklyrtlG.vlaGlflvilL 169
                   +  ++++e  + +++++++ le + + a ++a ++++++rtl+ +++Gl+++ +L
    CTQ27557.1 144 TAYETELERMQTQIDRFRQMLEHRAAVAIDQATERSRIWRTLSeIMVGLTALMFL 198
                   556788899999******************************9789999888777 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.38   8.6e+02      17      86 ..      17      94 ..      12      98 .. 0.65
   2 ?    0.6   0.3      0.29   6.5e+02      41      93 ..     114     172 ..     100     178 .. 0.56
   3 ?   13.6   0.1   2.7e-05      0.06       8      95 ..     444     556 ..     436     575 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.38
     GGDEF_2 17 ldldgpyvvvvielee..daer.llraleealral.gpdalvavrgdrlvlllpaede....edaeallerlarrlgg 86
                l l+   ++++++ ++  ++++  +r++ + l++    da + ++  rl+++ p+++     +++++  + +++rlgg
  CTQ27557.1 17 LTLASGSAMLMASSADrvERQAvQQRQVFDTLSDEvENDAWALSDLARLYVIKPSPETltqyQQLQQTDKSIEQRLGG 94
                555555556666654434333356666777777776788888888889999999999744445555777777777765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.29
     GGDEF_2  41 leealralgpdalvav.rgd...rlvlllpaedeedae...allerlarrlgglsvriGi 93 
                 ++++l++ ++ al++v rgd    + +l  ++ e+++e   + ++r+++ l++ ++ ++i
  CTQ27557.1 114 IANELQDEQQAALAHVaRGDapaAIAVLYGTAYETELErmqTQIDRFRQMLEH-RAAVAI 172
                 45555555555555432333343555666666666666444444444444444.555554 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 2.7e-05
     GGDEF_2   8 llerarrlgldldgpyvvvviel.......eedaer........llraleealral..gpdalvavrgdrlvlllpaedeedaeallerlarrlgg... 86 
                 +l+   +l +  + p  +++i++       +    r        +++ ++++++++  + ++ +   g+++ +llp+ de+ a++ ++++ ++++    
  CTQ27557.1 444 ALHSQMALAVHTHTPLSCLMIDIdhfktinD----RygheagdlVIKSVATIVQRAvrDIGMAFRYGGEEFLVLLPGIDEAGAHQCASEIYTQVRNmtl 538
                 44444567788899999******55544441....3344456668888888887776677888888999***********9999888888877777666 PP

     GGDEF_2  87 .........lsvriGiGs 95 
                          ++v+iGi s
  CTQ27557.1 539 rdglteigqVDVSIGIAS 556
                 677777777888888876 PP

>> COX4  Cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0014       3.2      90     120 ..      62      92 ..      56      97 .. 0.89
   2 ?    0.4   0.0      0.27   5.9e+02      10      41 ..     238     270 ..     232     287 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0014
        COX4  90 lirlfvagpvpkTlskewqeaqlermldlki 120
                 l rl+v +p p+Tl++  q +q+ + ++++ 
  CTQ27557.1  62 LARLYVIKPSPETLTQYQQLQQTDKSIEQRL 92 
                 679*********************9999875 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.27
        COX4  10 vdrwenplpdirf.reqseeikaLkekekgdWk 41 
                 vd++  + ++ir  re+    + L++++ +dW+
  CTQ27557.1 238 VDEIGDMAQAIRIfRENGLARQRLEQQRDADWA 270
                 78888999999998******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 4468.97
//
Query:       CTQ27558.1  [L=402]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-28   97.9   5.7    4.8e-18   65.5   0.2    2.4  2  HD        HD domain
    3.5e-13   49.6   0.6    1.3e-12   47.8   0.2    2.2  2  HD_5      HD domain
    1.8e-12   47.2   0.1    2.2e-05   24.0   0.1    2.3  2  HDOD      HDOD domain
  ------ inclusion threshold ------
        0.1   12.7   2.6        2.5    8.2   0.0    2.7  2  HD_6      HD domain


Domain annotation for each model (and alignments):
>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   1.1   4.4e-12     2e-08       3     121 ..      25     129 ..      23     130 .. 0.88
   2 !   65.5   0.2   1.1e-21   4.8e-18       2     121 ..     221     341 ..     220     342 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 4.4e-12
                 HHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHTTTTHHHHTS..HHHHHH...CTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH CS
          HD   3 eHsleVaklarrlaedlge.eedrellllaaLlHDiGkgpfgdafekkeee...fekflaHekvgaeilrevekrlgldledvaklirehheswegkkr 97 
                  H+ ++a +a  la++l++ +e  +++ +aaLlHDiG     +++     +    +++  H   g+ +l+ +   +      ++  ir hh+s +    
  CTQ27558.1  25 RHMQRTALIALTLAQRLELpDERQQTIFCAALLHDIGVLGDKRTIHS---LdaiDNIHDPHQRQGVAMLEGLATFQ-----PIVPFIRDHHFSPN---- 111
                 699*****************99****************996653332...2345899999************9999.....9************9.... PP

                 HHHHHCCTSCHHHHHHHHHHHHHH CS
          HD  98 prglaerqlslearivklaDrlaa 121
                          s+e+ iv  aD++++
  CTQ27558.1 112 ------HRGSREQHIVYFADAFER 129
                 ......567************997 PP

  == domain 2  score: 65.5 bits;  conditional E-value: 1.1e-21
                 HHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHTTTTHHHHTS..HHH.....HHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH CS
          HD   2 leHsleVaklarrlaedlge.eedrellllaaLlHDiGkgpfgdafekk.....eeefekflaHekvgaeilrevekrlgldledvaklirehhesweg 94 
                 ++Hs++V ++ar+la+ +++ e   + +++a++lHDiGk++++ ++++k      ee  + ++H+  + e+l+++ ++      d+++++++hhe+++g
  CTQ27558.1 221 ATHSIMVGEIARQLARWMQLpEPTCQQIQIAGYLHDIGKVYIPLSILEKegeldDEELSQVREHSYMTGELLSDYSELG-----DIINWASNHHEKMDG 314
                 79**************9999*999999**********************88776444777789****************.....*************** PP

                 HHHHHHHHCCTSCHHHHHHHHHHHHHH CS
          HD  95 kkrprglaerqlslearivklaDrlaa 121
                 +++p +l+++ l+l +ri+++aD + a
  CTQ27558.1 315 SGYPLHLEKEHLTLADRIISIADIFTA 341
                 ***********************9876 PP

>> HD_5  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3     6e+03      14      31 ..      82      99 ..      80     107 .. 0.73
   2 !   47.8   0.2   2.9e-16   1.3e-12       1      64 []     271     333 ..     271     333 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
        HD_5 14 hpeaaarlLsklprlpkd 31
                h +++  +L+ l  +++ 
  CTQ27558.1 82 HQRQGVAMLEGLATFQPI 99
                6679999***99998843 PP

  == domain 2  score: 47.8 bits;  conditional E-value: 2.9e-16
        HD_5   1 gtLtpeerellqehpeaaarlLsklprlpkdvaeiigqhhErldGsGyPrglkgeeIpleaRiL 64 
                 g+L +ee++ ++eh +++ +lLs   +l  d+   + +hhE++dGsGyP +l+ e + l  Ri+
  CTQ27558.1 271 GELDDEELSQVREHSYMTGELLSDYSELG-DIINWASNHHEKMDGSGYPLHLEKEHLTLADRII 333
                 689**************************.********************************95 PP

>> HDOD  HDOD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   4.9e-09   2.2e-05      90     133 ..      18      63 ..       1      70 [. 0.83
   2 !   20.9   0.0   4.5e-08    0.0002      96     135 ..     221     262 ..     213     291 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 4.9e-09
                 S-HHHHHHHHHHHHHHHHHHHHHTT-S-H..HHHHHHHHTTTHHHH CS
        HDOD  90 adlkklwehslavAlvarelaeelgledp..eeaflaGLLhdiGkl 133
                 +   +l +h +++Al+a +la++l+l+d+  + +f+a+LLhdiG l
  CTQ27558.1  18 IINPELHRHMQRTALIALTLAQRLELPDErqQTIFCAALLHDIGVL 63 
                 55567899*****************99955699***********87 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 4.5e-08
                 HHHHHHHHHHHHHHHHHTT-S-H..HHHHHHHHTTTHHHHHH CS
        HDOD  96 wehslavAlvarelaeelgledp..eeaflaGLLhdiGklvl 135
                 ++hs+ v+ +ar+la+ ++l++p  +++ +aG LhdiGk+ +
  CTQ27558.1 221 ATHSIMVGEIARQLARWMQLPEPtcQQIQIAGYLHDIGKVYI 262
                 57********************889**************976 PP

>> HD_6  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   1.1     0.016        73      38      66 ..      37      63 ..      15     175 .. 0.70
   2 ?    8.2   0.0   0.00055       2.5      21     120 ..     213     309 ..     197     366 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.016
                HHHHC.TS-HHHHHHHHHHHHHCCCGGGS CS
        HD_6 38 larllrgleeealrrllaflaalHDlGKa 66
                la++l    +++ ++ + + a lHD+G +
  CTQ27558.1 37 LAQRL--ELPDERQQTIFCAALLHDIGVL 63
                33333..4455556666667889***955 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00055
                 HHHHHHHHHHHHHTS-HHHHHC...TS-HHHHHHHHHHHHHCCCGGGSSHHHHTTS----TTS-.....-GGGT----HHHHHHHHHH..HHHHHHHHH CS
        HD_6  21 lDvaavaealldkwlsllarll.r.gleeealrrllaflaalHDlGKaspaFqakvpelaekleeaglelekelekarHdslgaalle..evarslaaa 115
                 +D+   + a  +  + ++ar+l r    +e + + + +   lHD+GK+      + +    +l++++l+     +  +H+ ++  ll+  +    +++ 
  CTQ27558.1 213 VDTYSSFTATHSIMVGEIARQLaRwMQLPEPTCQQIQIAGYLHDIGKVYIPLSILEK--EGELDDEELS-----QVREHSYMTGELLSdySELGDIINW 304
                 4444444444444444477777668667777777889999*******9876666653..3334433332.....3445655555555444444555555 PP

                 HHTTT CS
        HD_6 116 vggHH 120
                 +  HH
  CTQ27558.1 305 ASNHH 309
                 55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3023.11
//
Query:       CTQ27559.1  [L=349]
Description: L-asparaginase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-57  193.1   1.5    4.7e-57  192.6   1.5    1.2  1  Asparaginase    Asparaginase, N-terminal
    7.5e-24   84.2   0.1    3.5e-23   82.0   0.0    2.2  2  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain


Domain annotation for each model (and alignments):
>> Asparaginase  Asparaginase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.6   1.5   5.3e-61   4.7e-57       1     187 [.      26     219 ..      26     223 .. 0.96

  Alignments for each domain:
  == domain 1  score: 192.6 bits;  conditional E-value: 5.3e-61
                   EEEEEEEESGGGEEECTTS--CCEE...S-HHHHHCCTTTCCCCSEEEEEEEEEE-GGG--HHHHHHHHHHHHHHC..CT..-SEEEEE--STTHHH CS
  Asparaginase   1 kvlvlatGGTiasekdesggalapa...lsaeellealpelekiaeleseqlanidSsnmtpadwlklaeaieeal..ee..ydgfVvlhGTDTlay 90 
                   ++++latGGTia ++ ++++++ ++   + +++l++a+pe++kia++e eq+ani S+nmt + +l+l +++++ l  ++  +dg+V++hGTDTl +
    CTQ27559.1  26 HIVILATGGTIAGSAASNTQTTGYKagaIGVQTLINAVPEMSKIAHVEGEQVANIGSENMTSDIILQLSKRVNALLarDDvdVDGVVITHGTDTLDE 122
                   599***************999999989999********************************************99865589*************** PP

                   HHHHHHHHEES.SSEEEEE--SS-TTSTT-SHHHHHHHHHHHHHCGG.TTSECEEEETTEEEETTTEEE-BSSSSS-EEETTT--SEEEETTEEEES CS
  Asparaginase  91 tAsaLslmlknldkpvvltGsqrplselrsDgpeNlldAllvaasse.riagvlvvfngkllranrvtKvhtssldaFespnlgplaevegskvkvn 186
                   t ++L+l++k+ +kpvv+t+++rp++++++Dgp+Nll+A++vaa+++ r++gv+vv+n+++ +a+ vtK++++sld+F++p+ g+l+ v g+k +++
    CTQ27559.1 123 TPYFLNLTVKS-NKPVVFTAAMRPATAISADGPMNLLEAVTVAADPDaRGRGVMVVLNDRIGAARFVTKTNATSLDTFRAPEEGYLGVVVGGKPQFE 218
                   ***********.**********************************99***************************************9999988877 PP

                   E CS
  Asparaginase 187 k 187
                   +
    CTQ27559.1 219 T 219
                   6 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.44   3.9e+03      52      80 ..      26      54 ..      18      67 .. 0.66
   2 !   82.0   0.0   3.9e-27   3.5e-23       1     114 []     241     346 ..     241     346 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.44
                    T-EEEEEESSSBS-----H.....HHHHH CS
  Asparaginase_C 52 givvvatsqcpsgsvsnseyeagkelerl 80
                     iv+ at  ++ gs + ++  +g ++ + 
      CTQ27559.1 26 HIVILATGGTIAGSAASNTQTTGYKAGAI 54
                    57777777777777777755555544444 PP

  == domain 2  score: 82.0 bits;  conditional E-value: 3.9e-27
                     -EEEEE--TT--HHHHHHHHHTT--EEEEEEBTTTB--HHHHHHHHHHHTTT-EEEEEESSSBS-----H.....HHHHHTEEE-TT--HHHHHH CS
  Asparaginase_C   1 rVvvlklhpgmdtkvlkallkkgakGvvlegtGvGnlpsallealkeakargivvvatsqcpsgsvsnseyeagkelerlgvisaddmtpeaari 95 
                     +Vv+++ +++  + + +a+++++a+G++ +gtG+G+++      +k+a+++givvv++s++ sg v ++        ++  ++ ad ++p++ari
      CTQ27559.1 241 KVVIIYGYQDDPEYMYDAAIAHHADGIIYAGTGAGSVSVRSAAGIKKAQQAGIVVVRASRTGSGVVPPD--------DSQPGLVADSLNPAKARI 327
                     7********************************************************************........55668889********** PP

                     HHHHHCTT---HHHHHHHH CS
  Asparaginase_C  96 kLmlllgkgldpaevrklf 114
                     +Lm +l++++dp+ ++++f
      CTQ27559.1 328 LLMTALTQTKDPQLIQQYF 346
                     *****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2791.67
//
Query:       CTQ27560.1  [L=304]
Description: palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-96  323.0   0.0    1.8e-96  322.8   0.0    1.0  1  Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransfera


Domain annotation for each model (and alignments):
>> Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.8   0.0  9.8e-101   1.8e-96       3     295 .]       4     295 ..       2     295 .. 0.99

  Alignments for each domain:
  == domain 1  score: 322.8 bits;  conditional E-value: 9.8e-101
  Lip_A_acyltrans   3 kfkkellhlrywlvwlgiavllllallPesvlrkilkglgrlaakflkrrrkiarkNLalvfpekseaerekiidksfesvgraivetirvafi 96 
                       f+k+llh+r wl+w+g+++l+l+++lP+++l +i++  grl ++flkrr++iar+N++l+fp++s a re +id++f s+g+ ++et++++f+
       CTQ27560.1   4 VFNKQLLHPRNWLTWFGLGILWLIVQLPYPLLHFIGTSAGRLSRRFLKRREHIARRNIELCFPDMSPAARETLIDQNFMSLGMGLIETGMAWFW 97 
                      5999****************************************************************************************** PP

  Lip_A_acyltrans  97 sdeeiakrveviglehikealaeeegvilllpHfanwelaglvlakqypglavvaenkknpllnqliislRerfggkllprknaikelikalrk 190
                      sde+++k+++v+g  ++++al  ++gv+++++Hf+++el+g+ ++ + p++a++++++  pl++++++++R r+++++++r+n + +l+ al++
       CTQ27560.1  98 SDERVKKWFDVEGFANLNHALSGGKGVMVVGVHFMSLELGGRAMGLCRPMMATYRPHN-SPLMEWVQTRGRLRSNKAMIDRNN-LTGLVHALKS 189
                      **********************************************************.************************.********** PP

  Lip_A_acyltrans 191 gevvvllpDqdlgrkdsvfvpfFgepaatttspaklalktk.aavipvaiirkkdgskytvsvhPaldlssteDveqiaqalneilekeitaaP 283
                      ge+v+++pDqd+g+k svf+pfF +p+a+tt++++++++++ a+++ + ++rk d  +y++ ++  ++ +++eD + +a ++n+++e ei +aP
       CTQ27560.1 190 GEAVWFAPDQDYGPKGSVFAPFFSVPQAATTNGTYVLSRLSgAKMLSISMVRKLDRRGYSLHISEVMNDYPGEDKQIAAGYINKVIEREILRAP 283
                      ***************************************999**************************************************** PP

  Lip_A_acyltrans 284 eqylwlhrrfkt 295
                      eqylw hrrfkt
       CTQ27560.1 284 EQYLWVHRRFKT 295
                      ***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2301.64
//
Query:       CTQ27561.1  [L=212]
Description: putative neutral amino-acid efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-51  174.7  13.5    1.7e-51  174.4  13.5    1.1  1  LysE            LysE type translocator
     0.0031   17.2   4.1      0.009   15.7   4.1    1.9  1  TerC            Integral membrane protein TerC family
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.018   14.6   0.0    1.1  1  VitK2_biosynth  Menaquinone biosynthesis
      0.072   12.8   6.9       0.22   11.3   6.0    2.3  1  Mntp            Putative manganese efflux pump
      0.086   12.3  10.2      0.022   14.2   6.3    1.7  2  DUF373          Domain of unknown function (DUF373)


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.4  13.5   4.7e-55   1.7e-51       2     191 ..      19     209 ..      18     211 .. 0.98

  Alignments for each domain:
  == domain 1  score: 174.4 bits;  conditional E-value: 4.7e-55
        LysE   2 slllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksveaslvkpf 100
                 +++l pGp++++vlk+gi++g+k+g+l+a+gv+igdavl++l+  G+a+L+k++p +++++r+lG++yLlwlg ++l++ +++   +++++ +  + + 
  CTQ27561.1  19 FIILVPGPNTFFVLKTGIAHGVKKGYLAAAGVFIGDAVLMFLAFAGVATLIKTTPVLFNVVRYLGAIYLLWLGGKMLYAVLTQRDGQSDASAEPASAIL 117
                 789*********************************************************************************999999999****** PP

        LysE 101 lkglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvl.riinvvvgvlligfavklll 191
                 ++ l lsl+NPkailf++s++ ++++++++++  +++ila++l v s++++s+l++++++++r+++++k+l +  n+++g++++gfa++l++
  CTQ27561.1 118 KRSLTLSLTNPKAILFYVSFFVQFIDVNAKTPGVAFFILALTLEVISFCYMSFLILSGSFVTRYVKTRKKLaKLGNSLIGLVFVGFAARLAT 209
                 *******************************************************************99998******************87 PP

>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   4.1   2.5e-06     0.009      42     114 ..      55     144 ..      40     204 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.5e-06
        TerC  42 lvlRillillavallel....fdlilligglfLlytavkellekr............le.nklvkeekkkkkktkst...............llavviq 108
                  vl +l+ + ++ l++     f+++ ++g+++Ll+++ k+l++              ++ +               +               l++v + 
  CTQ27561.1  55 AVLMFLAFAGVATLIKTtpvlFNVVRYLGAIYLLWLGGKMLYAVLtqrdgqsdasaePAsA---------------IlkrsltlsltnpkaiLFYVSFF 138
                 4555666666677777767767*******************97554444433333331112...............13344445555555558888888 PP

        TerC 109 ielaDl 114
                 + ++D+
  CTQ27561.1 139 VQFIDV 144
                 888876 PP

>> VitK2_biosynth  Menaquinone biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.1e-06     0.018     128     223 ..      28     136 ..      18     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.1e-06
                     EEEEE-GGGHHHHHHTTS..SEEEEECCHHH............TGGGGTTEEEEEHHHHHHHHHSS-EEEEEEEEECCCHHHHHHHHHHHHHHHH CS
  VitK2_biosynth 128 rlvevpfdeieaavlege..dagLlIgesal............tyaeeglkkvlDLgelWeeltglPlvlglwvvrrdlaaeaakeleealreSv 208
                     ++ + +   i   v++g+   ag+ Ig++ l            + +    ++v  Lg+++  + g  + ++++  r    +++a+ +  +l++S+
      CTQ27561.1  28 TFFVLK-TGIAHGVKKGYlaAAGVFIGDAVLmflafagvatliKTTPVLFNVVRYLGAIYLLWLGGKMLYAVLTQRDGQSDASAEPASAILKRSL 121
                     566677.789999999999999*********888777777665333344599**************************999************** PP

                     HHHHHSHHHHHHHHH CS
  VitK2_biosynth 209 eyalahldevaeyaa 223
                       +l ++++++ y++
      CTQ27561.1 122 TLSLTNPKAILFYVS 136
                     *********998765 PP

>> Mntp  Putative manganese efflux pump
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   6.0   6.2e-05      0.22      17     130 ..      56     180 ..      31     207 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.2e-05
        Mntp  17 fqalmpliGwllGkllselieavdhwiafllLlllGlkmivealkeeeeekkek................eelslksllllaiatSiDAlavGlsLall 99 
                 + ++++++G++    +  ++ +v  +++++ Ll+lG+km+++ l++++ +++++                      +  ++ + +S     + +  ++ 
  CTQ27561.1  56 VLMFLAFAGVATLIKTTPVLFNVVRYLGAIYLLWLGGKMLYAVLTQRDGQSDASaepasailkrsltlslT-----NPKAILFYVSFFVQFIDVNAKTP 149
                 34555666776666677778888899******************999998887656655555544332211.....11111122222222222222222 PP

        Mntp 100 kvnillavlliGlvtlvlsllGlllGrklgs 130
                 +v  ++ +l++ +++++ + + +l G+ + +
  CTQ27561.1 150 GVAFFILALTLEVISFCYMSFLILSGSFVTR 180
                 3333333333333333333333333333333 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.6    0.0052        18     221     280 ..      10      70 ..       3      72 .. 0.80
   2 ?   14.2   6.3   6.1e-06     0.022     156     308 ..      58     203 ..      53     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0052
      DUF373 221 fvtyvv.allllligiisgyislesvssasvssglltlilafiygavewlalailtaslgk 280
                  +ty+v a++++l+   +++  l++  ++ v++g+l ++ +fi +av ++++ + +a l k
  CTQ27561.1  10 YLTYLVgAVFIILVPGPNTFFVLKTGIAHGVKKGYLAAAGVFIGDAVLMFLAFAGVATLIK 70 
                 5677761556689999999999888888999**************9999888877776655 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 6.1e-06
      DUF373 156 tiLvplGlllliyalllllglpelalaiillllGlylllrGfgldelleelleklkesleegritfvtyvvallllligiisgyislesvssasvssgl 254
                 ++L   G++ li +  +l++++++  ai ll lG+ +l+  +  ++  +++ ++  +++ + ++t+  +   ++l++++++  +i +++ +     +g+
  CTQ27561.1  58 MFLAFAGVATLIKTTPVLFNVVRYLGAIYLLWLGGKMLYAVLTQRDGQSDASAEPASAILKRSLTLSLTNPKAILFYVSFFVQFIDVNAKT-----PGV 151
                 699999****************************************9999999999999999999999999999******99988844444.....588 PP

      DUF373 255 ltlilafiygavewlalailtaslgkiideylkreekdiarllllpflvlaigl 308
                    ila++ +++ + ++++l++s g+++ +y+k++ k++a+l + ++ ++ +g+
  CTQ27561.1 152 AFFILALTLEVISFCYMSFLILS-GSFVTRYVKTR-KKLAKLGNSLIGLVFVGF 203
                 88888888889999988888765.77888888555.666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1595.67
//
Query:       CTQ27562.1  [L=87]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-40  135.0   1.7    7.9e-40  134.9   1.7    1.0  1  DUF2534       Protein of unknown function (DUF2534)
  ------ inclusion threshold ------
      0.036   13.8   0.7      0.042   13.6   0.7    1.1  1  IncD          Inclusion membrane protein D
       0.11   12.6   1.0       0.15   12.1   1.0    1.2  1  DUF3671       Protein of unknown function
        0.2   11.4   1.0       0.46   10.2   1.0    1.7  1  TCR_zetazeta  T-cell surface glycoprotein CD3 zeta chain


Domain annotation for each model (and alignments):
>> DUF2534  Protein of unknown function (DUF2534)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   1.7   1.8e-43   7.9e-40       2      80 .]       5      84 ..       4      84 .. 0.96

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 1.8e-43
     DUF2534  2 klkskeg.kkfllallivfivalsvvsratigGvidqYnlPlseWttsmfliqgamvavYslvftvllsiPlafyfLgek 80
                kl s+++ kk++l+l++vf++al+vv+rat+gGv+++Yn+P+seWttsmf++qgamv+vYs+vft+l++iPl+f+fLg++
  CTQ27562.1  5 KLLSNKNcKKYCLSLAVVFAIALAVVGRATFGGVVSEYNMPYSEWTTSMFFLQGAMVTVYSIVFTALFAIPLGFIFLGAD 84
                77777777**********************************************************************86 PP

>> IncD  Inclusion membrane protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.7   9.4e-06     0.042      39      87 ..      16      67 ..       4      76 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.4e-06
        IncD 39 avavatilavallvvagllfsgvlcs...pvsvlaaslffgvgafllggalv 87
                ++++a ++a+al vv    f gv+     p s  ++s+ff  ga++   ++v
  CTQ27562.1 16 CLSLAVVFAIALAVVGRATFGGVVSEynmPYSEWTTSMFFLQGAMVTVYSIV 67
                567899*****************97433499************998766655 PP

>> DUF3671  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.0   3.3e-05      0.15      33     104 ..       4      79 ..       1      81 [. 0.64

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.3e-05
     DUF3671  33 kkkfkkkvlkkyglllilpvllpliglivpilfeaksk....kslkkkelevlatsieklytiffiilvviillvl 104
                 +k + +k +kky+l+l ++  + l ++  +++ +  s+     s   +++ +l+ ++  +y i+f  l  i l ++
  CTQ27562.1   4 QKLLSNKNCKKYCLSLAVVFAIALAVVGRATFGGVVSEynmpYSEWTTSMFFLQGAMVTVYSIVFTALFAIPLGFI 79 
                 57888999******99977776666654555433333344444444555556677777777777777777766555 PP

>> TCR_zetazeta  T-cell surface glycoprotein CD3 zeta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.0    0.0001      0.46      13      23 ..      62      72 ..      54      73 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0001
  TCR_zetazeta 13 liYgiIiTaLF 23
                   +Y+i++TaLF
    CTQ27562.1 62 TVYSIVFTALF 72
                  59********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 663.07
//
Query:       CTQ27563.1  [L=337]
Description: putative diguanylate cyclase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-41  140.2   1.2      2e-40  138.2   0.0    2.4  3  GGDEF         Diguanylate cyclase, GGDEF domain
    1.4e-10   41.6   0.0    2.7e-10   40.7   0.0    1.5  1  GAF_2         GAF domain
    8.8e-06   26.4   0.3    2.5e-05   24.9   0.1    1.8  2  GAF           GAF domain
    4.1e-05   23.9   0.0     0.0001   22.7   0.0    1.7  1  GAF_3         GAF domain
     0.0041   16.6   0.0       0.05   13.1   0.0    2.3  2  Autoind_bind  Autoinducer binding domain


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.35   1.2e+03      85     118 ..       5      38 ..       2      59 .. 0.70
   2 ?   -1.4   0.0      0.48   1.7e+03      54      80 ..     138     164 ..     136     171 .. 0.84
   3 !  138.2   0.0   5.6e-44     2e-40       2     160 ..     175     330 ..     174     331 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.35
                 EEEEECSSHHHHHHHHHHHHHHHHCS-EEETTCC CS
       GGDEF  85 aillpetsseeaaelaerirrllaklkepvelsg 118
                 ++   + ++++ ++l+ ++r+ll++l+  ++++ 
  CTQ27563.1   5 ILARVSQTLAAEQSLETLVRQLLEMLEAVTRMES 38 
                 4444445555667778888888888777665554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.48
                 HHHHHHHHHHHHHHCCS-TTSEEEEES CS
       GGDEF  54 vGDevLqevakrLssslrksdlvaRlg 80 
                 +G++v+  +ak +s  ++k+ lv +l+
  CTQ27563.1 138 EGEQVMGLFAKLISHYVEKDTLVQQLQ 164
                 799999999999999999998887765 PP

  == domain 3  score: 138.2 bits;  conditional E-value: 5.6e-44
                 SB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHHH CS
       GGDEF   2 ahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaaela 100
                  +D+lT+LpNRr+l ++l+ ++++ar +q++++++++dld Fk+ind++Gh +GD +L +v+krL  ++r++d+v+RlggdeF+i+ +  + +   + +
  CTQ27563.1 175 STDELTQLPNRRALFKQLALRFASARAQQQQVSLIFIDLDGFKAINDRFGHPCGDSFLVQVGKRLTAVARREDIVGRLGGDEFLIVGSAQQPA---AQQ 270
                 68***********************999**********************************************************8777754...333 PP

                 HHHHHHHHCS-EEE.TTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSS CS
       GGDEF 101 erirrllaklkepv.elsgeelyvtisiGialappeegedleellkeAdealyeaKkagrn 160
                   + +l ++l   +   +++  y  +s+G+++ +  +  d+e  l++Adea+y+ Kk++r+
  CTQ27563.1 271 AYVTSLRQALCGVYfLGEQRIDYEGASFGVVTCD-PQSIDVEAALRAADEAMYQDKKSRRQ 330
                 34444444444444045555667789*******6.9*********************9986 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   7.6e-14   2.7e-10       2     137 ..      17     154 ..      16     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 7.6e-14
                 HHHHHHHHHHHHHHHHS.S..EEEEEEE-TTS-..EEEEEEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EEEEE CS
       GAF_2   2 adleelldlvldelvel.gaalgyillvdddgg..lrlaawgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglpaghaglrsflavP 97 
                 ++le+l++++l+ l+ +  ++  y+  +d + +    + a +  e++  + ++ p +e+l+ +al++ + ++ nd+++ ++++ ++ ++ g+++fl++P
  CTQ27563.1  17 QSLETLVRQLLEMLEAVtRMESTYLTRIDTNAQrqQIMFAHNSSEMQIPEGFSVPWDESLCKRALED-QCTFSNDVANRWHSCIAA-QELGIATFLSIP 113
                 799***********99835**99****99553321224488999999999998899***********.9*********99999998.************ PP

                 E-T.TS---EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2  98 lis.egrvvGvlnlyankppafdeedlelLeelaeqiaiai 137
                 ++  +g ++G l+  + ++++++ e  +++ ++a +i+  +
  CTQ27563.1 114 VRLaDGSLFGTLCATSRQQQPYNLEGEQVMGLFAKLISHYV 154
                 *888*********98899999**999999999999888765 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   7.1e-09   2.5e-05       2     129 ..      19     150 ..      16     153 .. 0.65
   2 ?   -1.4   0.0      0.95   3.4e+03      23      23 ..     208     208 ..     159     310 .. 0.63

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 7.1e-09
                 HHHHHHHHHHHHHHHHTESEEEEEEEEETTEEECEEEEECC....EEEETTSH........HHHHHHHHSSSEEESTGG..TSTTHHTTHHHHHHHHTT CS
         GAF   2 leelldtvveelrellgadrvalylpdydGlhydipqasrw....lfmkngrg........icgqvlatgqplvipdst..pdprfaqynrrdllenmg 86 
                 le+l+++++e l+ ++ ++   l + d +     + q+  +    ++m+ ++g        +c ++l+ +q    +d++   +++ a+       ++ g
  CTQ27563.1  19 LETLVRQLLEMLEAVTRMESTYLTRIDTNA----QRQQIMFahnsSEMQIPEGfsvpwdesLCKRALE-DQCTFSNDVAnrWHSCIAA-------QELG 105
                 788888888888888888888776633333....2222222333344444444222222227777777.7777777743235555444.......79** PP

                 ESEEEEEEEEE.TTEEEEEEEEEESSS.CSHHHHHHHHHHHHHHH CS
         GAF  87 irsslvvPlvn.dgelwGllvlhnpsp.pftreelellqvladqv 129
                 i ++l++P++  dg l+G+l+++++++ p++ e ++++  +a ++
  CTQ27563.1 106 IATFLSIPVRLaDGSLFGTLCATSRQQqPYNLEGEQVMGLFAKLI 150
                 **********55************666678777778888887766 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.95
                 E CS
         GAF  23 a 23 
                 +
  CTQ27563.1 208 L 208
                 0 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.8e-08    0.0001       1     125 [.      18     152 ..      18     156 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.8e-08
       GAF_3   1 sldellekllkllvkllgaevgalllldedgnklqvaagw.dgkpalse..sldedsalarralssgevvsepsf......aeedglpdraalavPLva 90 
                 sl+ l+ +ll++l  ++++e+  l   d+  ++ q++ ++   + +++e  s++ d++l++ral+ +  +s   +       +++ l  +  l +P+++
  CTQ27563.1  18 SLETLVRQLLEMLEAVTRMESTYLTRIDTNAQRQQIMFAHnSSEMQIPEgfSVPWDESLCKRALEDQCTFSNDVAnrwhscIAAQELGIATFLSIPVRL 116
                 5788999**************999999988888888855534555555567999***********9988766443222322336779999********* PP

       GAF_3  91 gr.qviGvlalastkprafdaedlelleslArqiat 125
                  +  ++G+l++ s++ ++++ e ++ +  +A +i+ 
  CTQ27563.1 117 ADgSLFGTLCATSRQQQPYNLEGEQVMGLFAKLISH 152
                 *******************************99985 PP

>> Autoind_bind  Autoinducer binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.082   2.9e+02      77     107 ..      44      72 ..      29      81 .. 0.71
   2 !   13.1   0.0   1.4e-05      0.05      93     145 ..     100     154 ..      72     156 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.082
                   GGCCCCCSHHHH.HHHHHHHHTT-SEEEEEEE CS
  Autoind_bind  77 dllaaelspaar.rfldeardfGlrsGltvpv 107
                   ++       +++  f +  ++ ++  G++vp+
    CTQ27563.1  44 IDTN---AQRQQiMFAHNSSEMQIPEGFSVPW 72 
                   4444...223335999999***********98 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.4e-05
                   HHHHTT-SEEEEEEEEETTSSE.EEEEEEESSSSCCHHHHHH.HHHHHHHHHHHH CS
  Autoind_bind  93 eardfGlrsGltvpvhgprgrl.aalslageerdldaaeaae.ararlqllalha 145
                   +a++ G+ + l++pv+ ++g+l ++l+ +++++++ + e  + +   + l+++++
    CTQ27563.1 100 AAQELGIATFLSIPVRLADGSLfGTLCATSRQQQPYNLEGEQvMGLFAKLISHYV 154
                   699*******************9***********999999988888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       969  (0.0540465); expected 358.6 (0.02)
Passed bias filter:                      680  (0.0379274); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 2570.97
//
Query:       CTQ27564.1  [L=59]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 451.59
//
Query:       CTQ27565.1  [L=79]
Description: conserved hypothetical protein; putative outer membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-18   65.3   0.0    5.2e-18   65.0   0.0    1.1  1  DUF333    Domain of unknown function (DUF333)


Domain annotation for each model (and alignments):
>> DUF333  Domain of unknown function (DUF333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   2.9e-22   5.2e-18       1      48 []      28      74 ..      28      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 2.9e-22
      DUF333  1 gmaNPAsvyCvkqGGkleiakdadGgqvgyCqlpdGkrceEwaLyrgd 48
                gm+NPA+vyC + GG+ + +++++ g  + C+lp G++ +EwaL+r+d
  CTQ27565.1 28 GMPNPAAVYCQQSGGTRVPVQTPQ-GVSTQCKLPSGETLDEWALWRRD 74
                7***********************.*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 651.38
//
Query:       CTQ27566.1  [L=119]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-32  110.1   1.0    1.1e-31  110.0   1.0    1.0  1  DUF488    Protein of unknown function, DUF488


Domain annotation for each model (and alignments):
>> DUF488  Protein of unknown function, DUF488
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   1.0   6.1e-36   1.1e-31       2     122 .]       5     112 ..       4     112 .. 0.96

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 6.1e-36
      DUF488   2 lervyd.llkkdgvrvlvDVRlwPrSrnpgfskealkedlkeagiaYvwlkelgpsrelrkwfkhdp.rweefferYaaeleskeaakealeelkelak 98 
                 ++rvyd ++ +dg+rvlvD RlwPr    g++keal+ d         w+kel+ps elrk+f+ +  +++ f +rY++el+ +   +e   +l++la+
  CTQ27566.1   5 CKRVYDpQESSDGYRVLVD-RLWPR----GIKKEALACDE--------WCKELTPSAELRKAFHGEAiDFAHFSQRYRQELDAH---RETGLRLAALAQ 87 
                 79*****************.*****....***********........****************99989*************93...578889****** PP

      DUF488  99 kg.vaLlcaekdperchrvvlaeyl 122
                 ++ ++Ll+a+k++e++h++vla +l
  CTQ27566.1  88 RQpLTLLYAAKNTEQNHARVLAAWL 112
                 **********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 979.75
//
Query:       CTQ27567.1  [L=169]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-37  126.1   0.0    1.1e-36  126.0   0.0    1.0  1  DUF523    Protein of unknown function (DUF523)
  ------ inclusion threshold ------
      0.045   13.8   0.0      0.089   12.8   0.0    1.4  1  TetR_C_7  AefR-like transcriptional repressor, C-terminal dom


Domain annotation for each model (and alignments):
>> DUF523  Protein of unknown function (DUF523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.0   1.2e-40   1.1e-36       2     135 ..       6     149 ..       5     151 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 1.2e-40
      DUF523   2 lvSaCLlgekvrydgkakksevleeelkelvke.elvpvCPEvaggLptPRepael...........akrvlkkegedvtealekgaeealeelkeeei 88 
                 lvSaCL+g +vry+g++k +  l ++l+++ +  +lv  CPE a+gLptPR pae+           + r+++++g+dvt +++  a  al++++e+++
  CTQ27567.1   6 LVSACLMGFQVRYNGSEKAQ--LAATLSRWQQAgRLVIHCPELAAGLPTPRLPAEIlggtggdvlagRARIVESDGRDVTGHYQLAAWLALSAAREAGC 102
                 8*****************94..8888*****999*******************************98668***************************** PP

      DUF523  89 kgailkekSPSCGvekiYdgtfskklvegeGvfaallkeegievpse 135
                 ++a+l+++SP+CG++ +Ydg+f++++++g+Gv+a+ll+++gi+v+s+
  CTQ27567.1 103 QAALLTDGSPTCGSQYVYDGSFRGRRKAGAGVAADLLRAHGITVFSD 149
                 ********************************************985 PP

>> TetR_C_7  AefR-like transcriptional repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.9e-06     0.089      46      74 ..      20      48 ..      12      51 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.9e-06
                ----HHHHHHHHHHHHTTSB-SS-HHHHH CS
    TetR_C_7 46 grveealaayLeaavaaGrLridDpelAA 74
                g+ +++laa L + ++aGrL i+ pelAA
  CTQ27567.1 20 GSEKAQLAATLSRWQQAGRLVIHCPELAA 48
                667899**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1327.65
//
Query:       CTQ27568.1  [L=230]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-17   62.2   0.0    6.1e-17   62.0   0.0    1.1  1  GATase         Glutamine amidotransferase class-I
    0.00033   20.5   0.0    0.00048   19.9   0.0    1.2  1  Peptidase_C26  Peptidase C26
  ------ inclusion threshold ------
       0.09   12.4   0.0       0.14   11.7   0.0    1.3  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
       0.11   12.8   0.0       0.12   12.6   0.0    1.2  1  ThuA           Trehalose utilisation


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   1.4e-20   6.1e-17      13     183 ..      27     220 ..      19     227 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 1.4e-20
                 HHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEE....EEECEEEEEEEEEE CS
      GATase  13 lvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgrkvv....kekekehhggtmrl 107
                 + +a++ l+  v+ ++  ++   + e+l ++d++ v +G  ++  +g+ +ai++aren+iP+LG C G+Q ++ie++r+v       + +++  g m +
  CTQ27568.1  27 IDDAAAVLEQPVKYDWLATPSIVSGEALAEYDAVWVVPGSPYRHPQGAFTAIRYARENGIPFLGTCGGFQHAVIEYARNVLgwqdAGHAETDSEGRMVI 125
                 66667777778888888876655544799****************************************************999966667777778877 PP

                 EETTT.................CGGTTTTSEEEEEEEEEEEEESG...CHHHTTEEEEEEEETTEEEEEEEEETTT.EEEESSBTTSTTSTTHHHHH CS
      GATase 108 gddet.................allyglknevierhrHryevnpk...elepaglevtakseddeelmeiiekknp.fvgvQFHPEststpegpell 183
                    ++                 a++yg  ++++e    ry v  +   ele+ +l+vt+++e++ e+ ++   + p fv++ F  E +   ++p++l
  CTQ27568.1 126 APLSCslvetsavvelrantliARAYGR-ESIEEGYHCRYGVSSAfaaELEQGDLRVTGWDEEG-EIRAVELVTHPfFVATLFQHERHALDGRPAPL 220
                 7777788888889999999988889998.8888888889*99999**999***********998.89999999999899987766665555555555 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.1e-07   0.00048      95     210 ..      75     203 ..      65     209 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.1e-07
  Peptidase_C26  95 laLiraalergvPilgiCrGlqllnvalGGtl..yqdieeqsgltdhreheq......saashavkvekgsllaellgseeievnslHhqaike.. 180
                    ++ ir a e+g+P lg+C G+q   + +  ++  +qd+ ++++ ++ r+  +      +++s  v+++ ++l+a+++g+e+ie     + +++   
     CTQ27568.1  75 FTAIRYARENGIPFLGTCGGFQHAVIEYARNVlgWQDAGHAETDSEGRMVIAplscslVETSAVVELRANTLIARAYGRESIEEGYHCRYGVSSaf 170
                    56689999**************98777665552245555433333333333244466799999***************777775444477888777 PP

  Peptidase_C26 181 ....laeelrveAvaeDgviEaieseeakafvlg 210
                         + +lrv+ ++e g i a+e+ +++ f+++
     CTQ27568.1 171 aaelEQGDLRVTGWDEEGEIRAVELVTHP-FFVA 203
                    77745668*******************99.5554 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.1e-05      0.14      61      86 ..      71      96 ..      46     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.1e-05
    GATase_3 61 esgldeaikeaaeaggpvlgiCGGlq 86
                 +g   ai+ a e+g+p lg CGG+q
  CTQ27568.1 71 PQGAFTAIRYARENGIPFLGTCGGFQ 96
                5677889******************9 PP

>> ThuA  Trehalose utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.6e-05      0.12      12     112 ..      19     123 ..       9     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.6e-05
                 SHHHH-...HHHHHH-HHHT-EEEEETTS.G--HHHHHT-SEEEEE-G..GS-HHHHHH.HHHHHHTT-EEEEEGGGGS.....HHHH.HH-SEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThuA  12 rhdsieaaieaieklgkengfevdatedaavfteenLaqydvvvflstegevldaaqeaalqryveaGgGfvglhsAadaeerskwfsgLiGarfvghp 110
                  h+ i+ ai+  +++++ + ++ d+   ++  + e La+yd+v ++  ++    + + +a++ + e+G  f+g  ++++ ++  ++ ++ +G + +gh+
  CTQ27568.1  19 AHQAIPLAIDDAAAVLE-QPVKYDWLATPSIVSGEALAEYDAVWVVPGSPYRHPQGAFTAIRYARENGIPFLGTCGGFQ-HAVIEYARNVLGWQDAGHA 115
                 57778877777777776.6688899999998999*********9999888999999999******************99.56668************95 PP

                 ........ CS
                 x......x RF
        ThuA 111 p......v 112
                 +       
  CTQ27568.1 116 EtdsegrM 123
                 43333440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1611.11
//
Query:       CTQ27569.1  [L=394]
Description: putative transporter; MFS superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-25   87.8  53.6    4.9e-22   78.3  51.0    2.3  2  MFS_1         Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.035   14.3  17.6       0.23   11.6   2.1    3.2  2  DUF2306       Predicted membrane protein (DUF2306)
       0.96    7.7   5.7      0.081   11.2   0.7    1.7  2  PTPS_related  6-pyruvoyl-tetrahydropterin synthase related do


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3  51.0   8.2e-26   4.9e-22       3     353 .]      21     349 ..      15     349 .. 0.85
   2 !   22.3   7.4     9e-09   5.4e-05      88     174 ..     301     389 ..     297     393 .. 0.88

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 8.2e-26
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgaga 101
                 l+a      ++ ++p+l  a+ +d+g++ ++ gll+tl  l++++ s++++ ++ rfG  r lll++ll ++g++l ++ +s  ll+++ ++ G g ++
  CTQ27569.1  21 LIATTLRVVFTGAAPLLD-AIRSDYGLTTAQTGLLTTLPLLAFGLVSPLAAGVARRFGMERSLLLAMLLICAGIALRSL-PSAALLFIGTAVIGCGIAL 117
                 444444455566677777.9*****************************************************455556.77779************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailg.pllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpa 199
                 ++ +   li + f++ + +r++g +s++++ +a+lg +l+ ++ ++ +gWr++ ++l ++ lla++    +lp+++++ +++ +           +   
  CTQ27569.1 118 GNVLLPGLIKRDFSQ-HVARMTGAYSLTMGGAAALGsALVVPVAMAGFGWRGALLLLMVFPLLALL---SWLPQSRRRAETPLTGSG--------AMH- 203
                 ***************.********************888888999*******************77...888777777777755555........666. PP

       MFS_1 200 wkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavts 298
                  + ++++   w + + l +++++++ +  +lp++  + +g+s   +ag l +ll+l++a+ +l +  +++rl  +r + + ++l+ +++++ ++l +  
  CTQ27569.1 204 NRGIWRSALAWQVTLFLGINSLVYYVIIGWLPSI-LQSMGYS-EAQAGSLHGLLQLATAAPGLAIPLILHRLRDQRGIAVLVALMCAISAAGLWLLPE- 299
                 67777777777466666666889999*******7.*******.8******************999999999877666666666666666666666666. PP

       MFS_1 299 savllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                    l++   +l+Gfg+g ++++ l+++   a  + a +a++l ++a+s+g +l++
  CTQ27569.1 300 ---LAIGWTLLFGFGSGATMILGLTFIGLRA--SSAHQAAALSGMAQSVGYLLAA 349
                 ...355566789*******************..999999***********99985 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 9e-09
       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergrai.gllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpe 174
                  +   +l G+g+ga + +g+++i   ++  +++ a+ g++++   l a++gp+l g +  +++ W+ + +++a++sl+++v+++l  ++
  CTQ27569.1 301 AIGWTLLFGFGSGATMILGLTFIGLRASSAHQAAALsGMAQSVGYLLAACGPPLMGRIHdANGDWHIPLLAVALISLVMAVCGALAGRD 389
                 5667789**********************8888887699999*****************77777*****************98886655 PP

>> DUF2306  Predicted membrane protein (DUF2306)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.1   3.9e-05      0.23      84     138 ..     125     186 ..      74     188 .. 0.68
   2 ?    9.1   5.1   0.00024       1.4      37      90 ..     281     334 ..     246     350 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.9e-05
     DUF2306  84 irrrdfaaHrawmirsYalal...aavtlrlvllvlil....lvgedfetayavlsllawvp 138
                 + +rdf +H a m+ +Y+l++   aa  ++lv++v+++         +  +  +l+ll+w+p
  CTQ27569.1 125 LIKRDFSQHVARMTGAYSLTMggaAALGSALVVPVAMAgfgwRGALLLLMVFPLLALLSWLP 186
                 5689***************9944357788999999999444333344445555666666665 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00024
     DUF2306  37 vyvlavllaalsglflsvyatgglvlllgflllallwlvftvlalvairrrdfa 90 
                 v+v+++++   +gl+l    + g++ll+gf+  a + l+ t+++l+a  +++ a
  CTQ27569.1 281 VLVALMCAISAAGLWLLPELAIGWTLLFGFGSGATMILGLTFIGLRASSAHQAA 334
                 678888899999*********************************998777655 PP

>> PTPS_related  6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.4      0.17     1e+03     288     310 ..      82     104 ..      59     179 .. 0.66
   2 ?   11.2   0.7   1.4e-05     0.081     139     184 ..     269     316 ..     237     323 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.17
  PTPS_related 288 vavllalllailivdslisfnyv 310
                    +++++l+ a ++++sl+s++++
    CTQ27569.1  82 LLLAMLLICAGIALRSLPSAALL 104
                   33333333444555555554443 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 1.4e-05
  PTPS_related 139 vl.rkrflenlvalvaialgialssfWlvPll.kggltsldsgsvsev 184
                   +l r r  + +  lva++++i  +++Wl+P l  g++  +  gs + +
    CTQ27569.1 269 ILhRLRDQRGIAVLVALMCAISAAGLWLLPELaIGWTLLFGFGSGATM 316
                   4447777788999*******************99**998888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3121.52
//
Query:       CTQ27570.1  [L=263]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-19   69.6   0.4    3.3e-19   68.9   0.4    1.4  1  HTH_18        Helix-turn-helix domain
    3.3e-08   33.4   0.0    0.00087   19.3   0.0    2.3  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
     0.0018   18.0   0.0      0.003   17.2   0.0    1.3  1  Cupin_2       Cupin domain
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.027   14.4   0.0    1.7  1  AraC_binding  AraC-like ligand binding domain
      0.053   13.5   0.0       0.51   10.3   0.0    2.1  2  NCD2          NAB conserved region 2 (NCD2)
      0.073   13.0   0.0       0.19   11.7   0.0    1.7  1  Cupin_7       ChrR Cupin-like domain
       0.26   11.1   1.4       0.76    9.7   0.7    2.1  2  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.4   1.3e-22   3.3e-19       1      79 [.     179     255 ..     179     257 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 1.3e-22
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyr 79 
                 +aa +++s+r L rl+ r++gl++++++++l l  A +lL++  g++v+++A alG++++++F+++f+k +g+tP++y 
  CTQ27570.1 179 WAAVFAMSERNLARLVVRETGLSFRRWRHQLQLILALQLLIR--GQTVQQTAQALGYDSTTAFITMFKKGLGQTPGRYH 255
                 79**************************************97..********************************996 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   6.6e-05      0.17       7      42 .]     172     207 ..     166     207 .. 0.86
   2 !   19.3   0.0   3.4e-07   0.00087       7      40 ..     220     254 ..     217     254 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.6e-05
                 CT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   7 tnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 +  t+ + A+ + +S++++ rl  +etG +++ +r+
  CTQ27570.1 172 RWQTLSQWAAVFAMSERNLARLVVRETGLSFRRWRH 207
                 556788889999***********************8 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 3.4e-07
                 CT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHH CS
    HTH_AraC   7 tnltiediAdelgf.SrsyFsrlFkketGmtPsqy 40 
                 ++ t+ + A++lg+ S + F++ Fkk +G+tP  y
  CTQ27570.1 220 RGQTVQQTAQALGYdSTTAFITMFKKGLGQTPGRY 254
                 5679****************************887 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-06     0.003       6      70 ..      27      90 ..      22      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-06
                ETTEEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2  6 ppGesapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllvv 70
                +  + +p+h+H+   +++  l G ++ +v++  + + +  +v +p    H  r t  +++ +l++
  CTQ27570.1 27 EAEQYIPAHSHRKG-QLILALHGALTCEVENAMWMVPPQYAVWVPGQLSHSNRATPGAQVCFLFI 90
                444589********.*************************************9998888888876 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     1e-05     0.027      13      66 ..      29      82 ..      20     151 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
                  T-SEEEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TT CS
  AraC_binding 13 dhsfpphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdse 66
                  ++  p h h + ++++ ++G+ ++++++  + ++p   +++p    H+ ++ ++
    CTQ27570.1 29 EQYIPAHSHRKGQLILALHGALTCEVENAMWMVPPQYAVWVPGQLSHSNRATPG 82
                  566799************************************999999888884 PP

>> NCD2  NAB conserved region 2 (NCD2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0002      0.51      12      63 ..     132     183 ..     123     189 .. 0.90
   2 ?    0.7   0.0      0.19   4.9e+02     107     120 ..     190     203 ..     188     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0002
        NCD2  12 esaerlvkslpklepkllklkkklakeveeilemseedprreeeirkysaiY 63 
                 + ++ l+ +lp++++++l+l      ++ ++++m  edp r + + +++a++
  CTQ27570.1 132 RLVQVLFDELPRQPQEHLQLPVSNHPKIRQMVTMMAEDPARWQTLSQWAAVF 183
                 56778899*****************************************998 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.19
        NCD2 107 LaRqvvrdsgykys 120
                 LaR vvr++g +++
  CTQ27570.1 190 LARLVVRETGLSFR 203
                 9********98876 PP

>> Cupin_7  ChrR Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.3e-05      0.19      21      59 ..      16      54 ..      11      91 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.3e-05
                SS-EEEEEEEE-TTEE---EE-TT-EEEEEEEEEEEETT CS
     Cupin_7 21 ekaratslvryapgsafsahkHpggeeilVLeGvfsdee 59
                e+a a ++  ++++++ +ah+H +g  il L+G+++ e 
  CTQ27570.1 16 ESAIAFRIRVVEAEQYIPAHSHRKGQLILALHGALTCEV 54
                55566667778999*******************997654 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2     3e+03      19      45 ..     175     199 ..     171     204 .. 0.66
   2 ?    9.7   0.7    0.0003      0.76       9      32 ..     213     236 ..     203     241 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
      HTH_23  19 svreIAreLgvsrrTvyrwlkryreeG 45 
                 + ++ A+ + +s+r + r + r  e G
  CTQ27570.1 175 TLSQWAAVFAMSERNLARLVVR--ETG 199
                 5667777777777766666555..555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0003
      HTH_23   9 rillllaeGlsvreIAreLgvsrr 32 
                 ++l+ll +G++v++ A++Lg    
  CTQ27570.1 213 LALQLLIRGQTVQQTAQALGYDST 236
                 45666667************7655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1944.83
//
Query:       CTQ27571.1  [L=148]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-46  156.2  18.5    5.5e-46  156.0  18.5    1.0  1  DUF441     Protein of unknown function (DUF441)
  ------ inclusion threshold ------
       0.37   10.4   6.9      0.086   12.5   3.6    1.7  2  CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like


Domain annotation for each model (and alignments):
>> DUF441  Protein of unknown function (DUF441)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.0  18.5   6.2e-50   5.5e-46       1     139 []       7     145 ..       7     145 .. 0.99

  Alignments for each domain:
  == domain 1  score: 156.0 bits;  conditional E-value: 6.2e-50
      DUF441   1 liLllllllgllaknksvviaalvllllkllklekllpllekkglelGviiltiavLvPiatgkislkellealkslkgliallvgilvavlsgkGvel 99 
                 liLl l++lg++++n++v+i++lvl+++++++l++++p++ek+gl++G+iilti+v++Pia+g++  ++l+++++++k+l+a++vg++v++l+g+Gv+l
  CTQ27571.1   7 LILLGLAALGFISHNTTVAISILVLIIVRVTPLNAFFPWVEKQGLTVGIIILTIGVMAPIASGTLPPSTLIHSFMNWKSLLAIAVGVFVSWLGGRGVSL 105
                 799************************************************************************************************ PP

      DUF441 100 lkeqpevvvalvlGtilgvvflkGvpvGPliaaGitalll 139
                 + +qp++v++l++Gt+lgv++++GvpvGPliaaGi++l++
  CTQ27571.1 106 MGSQPHLVAGLLVGTVLGVALFRGVPVGPLIAAGIISLFI 145
                 ************************************9985 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.14   1.2e+03     129     129 ..      30      30 ..       4      67 .. 0.54
   2 ?   12.5   3.6   9.6e-06     0.086     117     169 ..      75     133 ..      36     146 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.14
   CPP1-like 129 a 129
                 +
  CTQ27571.1  30 V 30 
                 2 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 9.6e-06
   CPP1-like 117 s......vpalllalglgasiyflnrKekklgravlltlvgLvvGlllGsllasllqvd 169
                 +        + lla+++g+ + +l  +  +l+ +    ++gL+vG++lG +l   ++v 
  CTQ27571.1  75 TlihsfmNWKSLLAIAVGVFVSWLGGRGVSLMGSQPHLVAGLLVGTVLGVALFRGVPVG 133
                 145555556789**************************************999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1177.84
//
Query:       CTQ27572.1  [L=166]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-24   86.2   0.0    2.2e-24   85.9   0.0    1.1  1  tRNA_edit  Aminoacyl-tRNA editing domain


Domain annotation for each model (and alignments):
>> tRNA_edit  Aminoacyl-tRNA editing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0   1.2e-28   2.2e-24       3     121 ..      31     152 ..      29     154 .. 0.94

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 1.2e-28
   tRNA_edit   3 gtktieelaaalgvdpsaiaKtlvlkd...kkgelvlvllpgdreldlkklakllgakklrlaseeelrellgvepGgvgPlglkaagvpvllDeslke 98 
                 ++  +e++ a +g++ ++ aK+lv k+   + +++vl++l +dr++dl+ la+++g++k++las++e+++l+ ++ G+++P++  +  +++++D+ l e
  CTQ27572.1  31 AVGQCEAVSAIRGTALGQGAKALVCKVkgnGVNQHVLAILAADRQADLASLARHIGGSKASLASPAEVEALTACVFGAIPPFSF-HPALRLVADPLLFE 128
                 67789**********************6666667**************************************************.69************ PP

   tRNA_edit  99 yp.tvvvgagengatlelspedlr 121
                 +  +++++ag+ +++++l++ed++
  CTQ27572.1 129 RFpQIAFNAGRLDRSIILDTEDYL 152
                 998******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1233.53
//
Query:       CTQ27573.1  [L=379]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-12   46.9   0.1    4.8e-12   45.7   0.1    1.6  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe
     0.0013   18.9   0.1      0.036   14.2   0.0    2.2  2  Lipase_GDSL_3   GDSL-like Lipase/Acylhydrolase family
     0.0056   16.0   0.0     0.0099   15.2   0.0    1.4  1  Zeta_toxin      Zeta toxin
  ------ inclusion threshold ------
      0.026   14.6   2.3       0.12   12.4   0.1    2.3  2  Glyco_transf_4  Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.1   1.1e-15   4.8e-12       5     213 ..     135     336 ..     132     365 .. 0.81

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 1.1e-15
                     HHHTTTTT-SEEEE-S--SGGGH....HHHHTT-SEEEEE-TTT-.TTT-TEEE---TTT--SHHHHHHHTTS-GGGS-SS----.-----HHHH CS
  Glyco_transf_9   5 akaLrekayDlvidlqgllkSAl....lvralkapvriGldeesrelaslfysrkvdkakgqhaVernraLfaqaldlpkpeskp.elalslker 94 
                     + +L +++yD++id + l+   +    l+r +ka+   G+++  +   +  ys+  d + ++ +V ++++L+a++l l++  +   +la+  + +
      CTQ27573.1 135 INELANNKYDIIID-PSLFDIPVhrlrLFRQIKAKSVLGFNKWPS---IKHYSHSFDFDCQRWHVTKTFELIADYLQLDTRGLDAyDLAVPGPIM 225
                     56788888888887.34443332222289999*********9999...99*************************99988777632677888889 PP

                     HHHHHHTT--SSS-EEEEE---TTGGGS--HHHHHHHHHHHHHT..T-EEEE---GGGHHHHHHTTS-HHHHTTEEE-TTTS-HHHHHHHHHTSS CS
  Glyco_transf_9  95 aaaldaagllaerpyivflpgaskdaKrWpeekyaelaealqek..gyqvvLfgsaeaeeeeiaeriaagleekavnllgktsLeelaallakad 187
                     ++ ++++  +++ + +v++  a  ++    + +  el+++l  +  g +v+L+ +  +    i+  + ++     v + +  +L  ++al+a+a+
      CTQ27573.1 226 QEVAQYLA-SLSGKAVVINIFAGHADRSLSQTQLTELLDKLLARhpGSAVILLDHRRE----IRIPLPPE-----VVINPFNTLHHAMALIAQAE 310
                     99999988.78889**************************988733588999866555....77777777.....7799**************** PP

                     EEEEESSHHHHHHHHTT--EEEEESS CS
  Glyco_transf_9 188 lvvgnDSGlmHlAaAldrpviaLYgp 213
                     l++++D+ + H+AaA ++p+ia+Y +
      CTQ27573.1 311 LIISPDTSVVHMAAAWNKPLIAVYKD 336
                     ************************86 PP

>> Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.036   1.6e+02      40      96 ..      68     120 ..      59     146 .. 0.78
   2 !   14.2   0.0     8e-06     0.036      48     106 ..     225     284 ..     211     310 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.036
  Lipase_GDSL_3  40 gfsGnalleaeladvlaevdasvfvldllpNasaeeirerleyfvktlrkahPktpi 96 
                    g  G   ++++l+++l     s +++d+l  +s++++  r ++ ++ + +a P t  
     CTQ27573.1  68 GAVGDVVVDSALVKCLH---QSGYIVDFLLTTSNSQVM-RYNPRIRHIYEADPVTSA 120
                    55677777777777765...588******999999985.899999999999998865 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 8e-06
  Lipase_GDSL_3  48 eaeladvlaevdasvfvldllpN.asaeeirerleyfvktlrkahPktpillvedlsttk 106
                     +e+a++la++ +++ v+++++  a+ +  + +l++++++l ++hP   ++l+++++  +
     CTQ27573.1 225 MQEVAQYLASLSGKAVVINIFAGhADRSLSQTQLTELLDKLLARHPGSAVILLDHRREIR 284
                    589******************995666777889*********************987655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.2e-06    0.0099      55     104 ..     102     151 ..      83     168 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.2e-06
  Zeta_toxin  55 RelhPeyeeilkadpkkaseltqkdaselvekllqeaiengyniivegtl 104
                  ++ P+ + i++adp + ++  +k+   + + +++e+++n+y+ii++  l
  CTQ27573.1 102 MRYNPRIRHIYEADPVTSADFLRKFNHNVPRDVINELANNKYDIIIDPSL 151
                 5799******************************************9766 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.7e-05      0.12      11     107 ..      79     177 ..      74     204 .. 0.83
   2 ?    1.7   0.3     0.052   2.3e+02      41     138 ..     278     355 ..     224     373 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.7e-05
  Glyco_transf_4  11 LaraLarrGheVtvv.tpgddgpleeevelvvrvprvplpllkrllrslaf..lrrlrrllkrekpDvvHahspaalgaallalrrrlgiplVlt 102
                     L++ L + G+ V+++ t + ++  +++ ++++ +    ++ ++++lr + +  +r++ + l ++k+D++   s + + +  l+l r+ +++ Vl 
      CTQ27573.1  79 LVKCLHQSGYIVDFLlTTSNSQVMRYN-PRIRHIYEADPVTSADFLRKFNHnvPRDVINELANNKYDIIIDPSLFDIPVHRLRLFRQIKAKSVLG 172
                     899***********9988888888888.8999999999999999998876544899*****************9999999999998888888888 PP

  Glyco_transf_4 103 vHgly 107
                     +  + 
      CTQ27573.1 173 FNKWP 177
                     87776 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.052
  Glyco_transf_4  41 vrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrlgiplVltvHglyekrllkarlkplsrllralerrllrrad 135
                        + +++pl++   +++ + ++ + +l + +  ++ + +  + ++ + a++  +++pl++ + +                l+++l++  +++a+
      CTQ27573.1 278 DHRREIRIPLPPEVVINPFNTLHHAMALIA-QAELIISPD--TSVVHM-AAA--WNKPLIAVYKDVL--------------LNNRLWAPGYDNAR 352
                     333344444444444444444444444443.778886666..333333.334..5999999888877..............44444444444444 PP

  Glyco_transf_4 136 rvi 138
                     ++i
      CTQ27573.1 353 QII 355
                     444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2826.14
//
Query:       CTQ27574.1  [L=80]
Description: Virulence protein MsgA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-22   78.2   0.1    5.4e-22   77.9   0.1    1.1  1  DinI           DinI-like family
  ------ inclusion threshold ------
      0.075   13.3   0.0       0.12   12.6   0.0    1.3  1  HTH_Tnp_Tc3_2  Transposase


Domain annotation for each model (and alignments):
>> DinI  DinI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.1   6.1e-26   5.4e-22       3      63 .]      17      77 ..      16      77 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 6.1e-26
                THHHHHHHHHHHHHHHH-SS-EEEEEEESS.-EEEEES--HHHHHHHHHHHHHHHHTHHHH- CS
        DinI  3 gaiealeaELskRiqevfPdaevrvrkasa.nglsveGaskedkeriseiLQetwesADdWl 63
                ga+ea+ +EL+kR+q+ fP+aevrv+++++  +++++ ask++ke+is+++Qe++e+AD+Wl
  CTQ27574.1 17 GAREAILNELTKRMQRIFPEAEVRVKPMMTlPAINTD-ASKHEKELISRTVQEMFEEADMWL 77
                89***********************************.***********************8 PP

>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.4e-05      0.12       7      44 ..      38      75 ..      36      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
  HTH_Tnp_Tc3_2  7 lvrkdPritlreLanelkeeGksvsreTirrrLrkagl 44
                   +vr +P++tl ++  + ++ +k+  ++T++ +  +a++
     CTQ27574.1 38 EVRVKPMMTLPAINTDASKHEKELISRTVQEMFEEADM 75
                   799**************999**********99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 602.08
//
Query:       CTQ27575.1  [L=139]
Description: DNA polymerase V, subunit D [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-12   45.4   0.0    8.1e-12   44.9   0.0    1.3  1  Peptidase_S24  Peptidase S24-like


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   4.5e-16   8.1e-12       3      67 ..      57     119 ..      55     122 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 4.5e-16
                    XSSTT.CCTXXTTXEEEEECTS---TTSEEEEEETTCE-EEEEEEEEETTEEEEE.SSTTSTEEEE CS
  Peptidase_S24   3 pGdSM.eptlldGdlilVdkfsepkrGdivvfrlpgeeeayiKrviglpgdrvllasnneypplyi 67 
                     GdSM ++++ +Gdl++Vd  +++++Gdiv++ + ge   ++K+++ lp  ++  + n+ y p+ +
     CTQ27575.1  57 AGDSMiDAGIDEGDLLVVDSARKAEHGDIVIAAVGGE--FTVKKLQLLPRVQLN-PMNPAYSPIVV 119
                    69***********************************..**********99999.88888999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1111.81
//
Query:       CTQ27576.1  [L=421]
Description: DNA polymerase V, subunit C [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-33  115.8   0.0    7.1e-33  113.7   0.0    2.0  2  IMS              impB/mucB/samB family
    1.1e-22   79.8   0.1    2.7e-22   78.6   0.1    1.7  1  DUF4113          Domain of unknown function (DUF4113)
    3.5e-14   53.5   0.0    1.1e-13   52.0   0.0    1.7  2  IMS_C            impB/mucB/samB family C-terminal domain
    2.3e-07   30.7   0.1    5.6e-07   29.5   0.1    1.7  1  IMS_HHH          IMS family HHH motif
  ------ inclusion threshold ------
      0.054   13.3   0.1       0.41   10.5   0.0    2.5  2  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   0.0     2e-36   7.1e-33       2     149 ..       6     149 ..       5     150 .. 0.95
   2 ?   -1.1   0.0      0.47   1.7e+03       8      44 ..     219     273 ..     214     280 .. 0.48

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 2e-36
                 EETTHHHHHHHHHT.T-TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTH.TT.-EEEEEE-HHHHHHHHHHHHHHHHH-S..EEEEETT CS
         IMS   2 DmdaFyasverardpeLkgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklc.pd.livvkvdlekyrraskkileilkrfispkvekasiD 98 
                 D++aFyas++ a +p+Lkg+Pvvv ++++  g+via s eA+ + vk g + ++ k+    + ++ +++++e+y ++s++++++l++  +p++e +siD
  CTQ27576.1   6 DVNAFYASCQTAFRPDLKGRPVVVLSNND--GCVIARSAEAKPF-VKMGEPYFKQKAAFlRHgVVAFSSNYELYADMSSRVMATLEEL-TPRCEIYSID 100
                 9**************************77..***********99.9*****9999988734679999*********************.88******** PP

                 EEEEE-HHHHHHHH-SHHHHHHHHHHHHHHHH---EEEEEESSHHHHHHHH CS
         IMS  99 EayldltgleelaesegaalakelrkaikeelgltvsiGiasnkllAKlas 149
                 Ea++d++g+++  +   +++ +e+r+++ ++++lt+ +Gia++k+lAKla+
  CTQ27576.1 101 EAFCDVSGVRHCRDL--TDFGREIRATVLQRTHLTLGVGIAPTKTLAKLAN 149
                 ********9999998..8*******************************96 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.47
                 HHHHHHHT.T-TTS-EEEEET.......................TEEEEE-HHHHT CS
         IMS   8 asverardpeLkgkPvvvaqgsek...................rgiviavsyeAra 44 
                 +  er+ + eL+g+P    ++ +                    +   + +sy+Ara
  CTQ27576.1 219 VVLERTVR-ELRGEPCLALEEFAPakqeiicsrsfgdritayeDMRQAICSYAARA 273
                 55555555.56666655555433344444444444444444442222334555554 PP

>> DUF4113  Domain of unknown function (DUF4113)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.1   7.5e-26   2.7e-22       2      51 .]     371     420 ..     370     420 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 7.5e-26
     DUF4113   2 rLmkalDaiNrrfGrgtvklaaqglkasWkmkrehlSprYTTrwdelpvV 51 
                 rLm++lD++N+++Grg++++a qg++++W+mkre+lSprYTTr  +l++V
  CTQ27576.1 371 RLMQVLDQLNAKNGRGALYFAGQGIQQQWQMKREMLSPRYTTRYGDLLRV 420
                 9**********************************************997 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0         3   1.1e+04      47      80 ..     118     146 ..      74     157 .. 0.61
   2 !   52.0   0.0     3e-17   1.1e-13       7     108 ..     242     350 ..     238     357 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3
       IMS_C  47 vartitlklrysdfhasrsa.tLprptsdtreile 80 
                 ++r i+ ++        r++ tL++    t+++++
  CTQ27576.1 118 FGREIRATV------LQRTHlTLGVGIAPTKTLAK 146
                 445555555......45555555544455555544 PP

  == domain 2  score: 52.0 bits;  conditional E-value: 3e-17
       IMS_C   7 epksissektfpepyd.esklkkelreLaeelarrLrdkglvartitlklrysdfh.......asrsatLprptsdtreileaalkLlrrlidepglpi 97 
                  ++ i ++++f+ +++ +++ ++ ++ +a+++a++Lr +++++r ++ ++++s+f        +s s +L +pt+d+r+i++aa ++l+++++  g ++
  CTQ27576.1 242 AKQEIICSRSFGDRITaYEDMRQAICSYAARAAEKLRGEHQYCRFVSAFVKTSPFAlnepyygNSASLKLLTPTQDSRDIIAAATSCLDAIWK-AGHRY 339
                 5679*********8887888*********************************7777777778******************************.***** PP

       IMS_C  98 rligvsasnlv 108
                  + gv+++++ 
  CTQ27576.1 340 QKAGVMLGDFY 350
                 *******9986 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   1.6e-10   5.6e-07       2      32 .]     169     199 ..     168     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.6e-10
     IMS_HHH   2 ddvkefLwplpitkipGiGgklgekLeklGi 32 
                 ++ +++++ lp+++++GiG++ g+kLe++Gi
  CTQ27576.1 169 QRQRKLMALLPVSEVWGIGRRIGKKLEAMGI 199
                 6667777788********************9 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.76   2.7e+03       3      27 ..     103     117 ..     101     129 .. 0.74
   2 ?   10.5   0.0   0.00011      0.41       5      30 ..     182     207 ..     180     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.76
  DNA_pol_lambd_f   3 FtkvyGVGpktAkkwyakGirtled 27 
                      F+ v GV          +++r+l d
       CTQ27576.1 103 FCDVSGV----------RHCRDLTD 117
                      7788888..........66666655 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00011
  DNA_pol_lambd_f   5 kvyGVGpktAkkwyakGirtledlra 30 
                      +v+G+G+++ kk+ a+Gi t+ +l +
       CTQ27576.1 182 EVWGIGRRIGKKLEAMGIGTVLQLAE 207
                      7*******************998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3391.01
//
Query:       CTQ27577.1  [L=301]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-39  134.8   0.1    4.6e-39  133.9   0.1    1.4  2  LysR_substrate  LysR substrate binding domain
    1.1e-19   70.1   0.8    1.9e-19   69.4   0.8    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.082   12.7   0.1       0.17   11.7   0.1    1.5  1  HTH_30          PucR C-terminal helix-turn-helix domain
      0.093   12.2   0.0       0.17   11.3   0.0    1.5  1  VirC2           VirC2 protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.71   3.2e+03     144     159 ..      38      53 ..      31      64 .. 0.69
   2 !  133.9   0.1     1e-42   4.6e-39       3     207 ..      89     294 ..      87     296 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.71
                     HHHHTTS-BEEEEGGG CS
  LysR_substrate 144 alvaaGlGiallprsa 159
                     +  +a lG++ll r +
      CTQ27577.1  38 QQLEAHLGVSLLQRTT 53 
                     4456777777777765 PP

  == domain 2  score: 133.9 bits;  conditional E-value: 1e-42
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSE CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gepv 96 
                      ++g+Lri++  ++a  +l plla+f+   P+++++l+++d    +d l +g +D+air+gp eds l+ar+++e  lv +a p++ L r g+p 
      CTQ27577.1  89 KPKGHLRIAIGGSTACDVLIPLLADFMTSWPDIRIDLQVAD--KPAD-LISGNIDCAIRGGPMEDSTLIARKIGEATLVTCATPGY-LQRyGTPA 179
                     689**************************************..****.77788*********************************.******** PP

                     CGGGGCT.SEEEEESTTST...HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEE CS
  LysR_substrate  97 sledLad.eplilleegsg...lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylv 186
                     s+++L++ ++li +  +++   +  ++ +   +++lk ++ l +n+ +a +a+ +aGlGi    ++ ++++la+g+lv   l++++++  ++++v
      CTQ27577.1 180 SPDELHHgHRLISYLSPASgraFPFRFTRHGVSTELKTEPHLGINESNAHIAAGEAGLGIVQTFTYSLKPALASGELV-EILSAWRPTpYPFHVV 273
                     ******99******544442666666777777778888****************************************.9999999999****** PP

                     EETTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 187 yrkgrelspavrafidflrea 207
                     y ++r+ +p++r fid+l+++
      CTQ27577.1 274 YARHRHVPPRLRVFIDWLAAV 294
                     ******************886 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.8   4.2e-23   1.9e-19       3      60 .]       6      63 ..       4      63 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 4.2e-23
                HHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  3 qlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                +l++f  v+e+gsftrAA+ L++  +++s+ i++LE++lgv L++Rt+r++++T++G+
  CTQ27577.1  6 ALKAFTRVVEAGSFTRAADSLNMPNATLSKTIQQLEAHLGVSLLQRTTRRITVTPEGR 63
                79*******************************************************7 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.7e-05      0.17      11      50 ..      15      54 ..       7      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.7e-05
                TTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHH CS
      HTH_30 11 nggnisatAkaLhvHrnTlryRLrrieellgldlddpddr 50
                + g+ +++A++L++   Tl++ ++++e  lg++l +  +r
  CTQ27577.1 15 EAGSFTRAADSLNMPNATLSKTIQQLEAHLGVSLLQRTTR 54
                56999****************************9876554 PP

>> VirC2  VirC2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.9e-05      0.17     119     165 ..       6      51 ..       1      74 [. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHTSGGGGS--------STT-----EEEEEE--HHHHHH CS
       VirC2 119 alddfesmladGsfskapksypiphevveksiivqtsrmlpvsllel 165
                 al+ f  +++ Gsf++a+ s  +p+ +  k+ i q    l vsll+ 
  CTQ27577.1   6 ALKAFTRVVEAGSFTRAADSLNMPNATLSKT-IQQLEAHLGVSLLQR 51 
                 899**********************998887.578899999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2257.32
//
Query:       CTQ27578.1  [L=249]
Description: Uncharacterized oxidoreductase YkvO [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-60  202.6   1.8    7.9e-60  202.3   1.8    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.4e-48  164.9   0.6    1.7e-48  164.7   0.6    1.1  1  adh_short        short chain dehydrogenase
    7.6e-12   45.5   2.3    1.1e-11   45.0   2.3    1.1  1  KR               KR domain
      0.002   17.7   0.4      0.013   14.9   0.4    1.9  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.012   15.3   0.4      0.023   14.4   0.4    1.4  1  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 
      0.076   13.2   0.1       0.54   10.4   0.0    2.0  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
       0.13   12.1   0.2        0.3   10.9   0.0    1.6  2  Helicase_RecD    Helicase
       0.14   12.2   2.3       0.75    9.8   2.3    2.0  1  ADH_zinc_N       Zinc-binding dehydrogenase
       0.15   12.3   2.4       0.13   12.4   0.4    1.8  2  CwsA             Cell wall synthesis protein CwsA


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.3   1.8     4e-63   7.9e-60       4     233 ..      17     246 ..      13     247 .. 0.94

  Alignments for each domain:
  == domain 1  score: 202.3 bits;  conditional E-value: 4e-63
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdra 98 
                    gIG a Akalae+Ga+v +t +++e+   ++++++ +g ++  +++D++  ++++a++++++e+ g+lD+l+ nag  +    p+  ++++++dr+
    CTQ27578.1  17 AGIGLASAKALAEQGAKVYITGRRQEE---LDAAVRFIGPAArgIRADAAVLSDLDAVFATIAEESGRLDVLFANAGGGDM--LPLSAITEAHVDRI 108
                   7**********************9999...66666666655446*************************************..************** PP

                   HHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT...HHHHHHHH CS
  adh_short_C2  99 ldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg...fdelleel 192
                   +++n+++++ +++ alpl+++g+s++ + s++a ++++n ++y+a+Kaa+ +l+r++A e+ ++giR+N+vspgp++T+   g+      + l ++l
    CTQ27578.1 109 FATNVRGVVFTVQKALPLLADGASVILTGSTAAVKGTANFSIYSASKAAVRSLARSWALEVSDRGIRINVVSPGPVRTPGLGGLVAeadRQGLFDAL 205
                   ********************************************************************************8887553335669**** PP

                   HHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 193 earaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   +a  plgrlg+pee++++++fLasde+s+i+ ++++vDgGl
    CTQ27578.1 206 AAGVPLGRLGEPEEIGRTVVFLASDESSFINAAEIYVDGGL 246
                   ****************************************7 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.7   0.6   8.5e-52   1.7e-48       1     187 [.       8     189 ..       8     197 .. 0.97

  Alignments for each domain:
  == domain 1  score: 164.7 bits;  conditional E-value: 8.5e-52
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 kv+lvtG+s+GIG+a ak+la++Gakv++++r++e+l +++  ++ +   a  i++D +  ++++a++++++++ g+ldvL +NAG   + p s ++e+
  CTQ27578.1   8 KVALVTGGSAGIGLASAKALAEQGAKVYITGRRQEELDAAVRFIGPA---ARGIRADAAVLSDLDAVFATIAEESGRLDVLFANAGGGDMLPLSAITEA 103
                 89****************************************99976...************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                  ++r++++N+ gv+ +++ +lp +    +++++ ++S+a+ ++ a+++ YsAsKaav++l+rs+a e++++gir+n+v PG+v+T+  
  CTQ27578.1 104 HVDRIFATNVRGVVFTVQKALPLLA--DGASVILTGSTAAVKGTANFSIYSASKAAVRSLARSWALEVSDRGIRINVVSPGPVRTPGL 189
                 ***********************77..999*******************************************************865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   2.3   5.5e-15   1.1e-11       3     164 ..      10     166 ..       9     180 .. 0.89

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 5.5e-15
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                  l+tGG  g+Gl+ a+ lae+ga+ + +++R+      +++l a+++  g   + ++aD +  +++ a++++i +e +++   +  Ag  +  +l+  t
  CTQ27578.1  10 ALVTGGSAGIGLASAKALAEQGAK-VYITGRR------QEELDAAVRFIGPAARGIRADAAVLSDLDAVFATIAEESGRLDVLFANAGGGDMLPLSAIT 101
                 59********************96.899****......23344567778999999******************************************** PP

                 HHHHHHHHTTTTHHHH.HHHHHTTT.S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGaw.nLhelled.esldffvlfSSiagllgsagqanYaaaNaflDalaeyrr 164
                 ++++++++a  v+G+   ++++l+   +   ++l+ S a++ g+a  + Y+a  a + +la++++
  CTQ27578.1 102 EAHVDRIFATNVRGVVfTVQKALPLlADGASVILTGSTAAVKGTANFSIYSASKAAVRSLARSWA 166
                 **************97357777776788889*****************************99886 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4   6.7e-06     0.013       1     158 [.      10     167 ..      10     188 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.7e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfie 89 
                 +lVtG++  iG a +kal+e+g +v    r+++    ++++ +          +   + l d +a+ + ++ee     +++A  gg +    ++   ++
  CTQ27578.1  10 ALVTGGSAGIGLASAKALAEQGAKVYITGRRQE----ELDAAVrfigpaargiRADAAVLSDLDAVFATIAEESGRLDVLFANAGGGDMLPLSAITEAH 104
                 59***********************99999933....33333355678886665556667777777777777744444444442222222222222234 PP

                 HHTHHHHHHHHHHHHHTCT..EEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHH CS
   Epimerase  90 knlqgtlnlleaarkagvk..rllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaa 158
                  + + ++n+  ++++ +     l    S+ + G  a     + t     +  s Y+a+K+a+ +l++++a 
  CTQ27578.1 105 VDRIFATNVRGVVFTVQKAlpLLADGASVILTGSTAA---VKGT-----ANFSIYSASKAAVRSLARSWAL 167
                 4444455555555443333211112222222222222...1111.....3446677777776666666665 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.4   1.2e-05     0.023      40      63 ..       7      30 ..       1      36 [. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
                     -SEEEEESTSSHHHHHHHHHHHHS CS
  Eno-Rase_NADH_b 40 pkkvLviGaStGYGLAsriaaafg 63
                      k +Lv G+S+G GLAs  a+a +
       CTQ27578.1  7 DKVALVTGGSAGIGLASAKALAEQ 30
                     5899*************9887755 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00027      0.54       8      71 ..      17      83 ..       9     102 .. 0.85
   2 ?    0.3   0.0      0.36   7.1e+02      69      99 ..     113     147 ..     101     160 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
                   SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT...EEE-SSHHHHHHHCSEEEE-SSSHHHHHH CS
  NAD_binding_2  8 GvMGsnmalnllkagykvavynrtkekveelvaeg...akaaesieelvasldvvitmvkagkavde 71
                   + +G   a+ l+++g kv++  r++e+++++v      a+++   ++++++ld+v+  + +++   +
     CTQ27578.1 17 AGIGLASAKALAEQGAKVYITGRRQEELDAAVRFIgpaARGIRADAAVLSDLDAVFATIAEESGRLD 83
                   567888899*****************999999874566999999999*********99998776555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.36
                    HHHHHHS...HCCC--TT-EEE.E-S---HHHHHH CS
  NAD_binding_2  69 vdevieg...llealkkgdili.dgstsspedtre 99 
                    v+ v++     l+ l+ g+ +i  gst++++ t +
     CTQ27578.1 113 VRGVVFTvqkALPLLADGASVIlTGSTAAVKGTAN 147
                    55666654447777777765551566666666655 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015       0.3       9      51 ..      14      56 ..      13      83 .. 0.88
   2 ?   -2.8   0.0       2.5   4.9e+03      23      48 ..     142     167 ..     131     179 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
  Helicase_RecD  9 GKSaalGlalaaliaegksnilvtapskenvktlfeflakgle 51
                   G Sa +Gla a+++ae+ +++++t  ++e ++  ++f+  + +
     CTQ27578.1 14 GGSAGIGLASAKALAEQGAKVYITGRRQEELDAAVRFIGPAAR 56
                   88*******************************9999976654 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.5
  Helicase_RecD  23 aegksnilvtapskenvktlfeflak 48 
                     +g +n  + + sk++v++l ++ a 
     CTQ27578.1 142 VKGTANFSIYSASKAAVRSLARSWAL 167
                    44556777888888888888776654 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.3   0.00038      0.75       1      73 [.      18      96 ..      18     170 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00038
                HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT.T.ESEEEET.....TTCHHHHHHHHHTT.TSSEEEEEESSCSHHHHH CS
  ADH_zinc_N  1 gvGlaavqlAkalGaeviavdsseeklelakkl.G.adeviny.....keadlverikeltg.gegvdvvfecvGsgatle 73
                g+Gla  ++++  Ga+v+ + + +e l+ a ++ G a + i +     +  dl++  + + +  + +dv f  +G g++l+
  CTQ27578.1 18 GIGLASAKALAEQGAKVYITGRRQEELDAAVRFiGpAARGIRAdaavlS--DLDAVFATIAEeSGRLDVLFANAGGGDMLP 96
                8****************************99955666666666332211..455555555543457787777777555554 PP

>> CwsA  Cell wall synthesis protein CwsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   6.6e-05      0.13      21      82 ..      12      76 ..       7     101 .. 0.84
   2 ?   -1.5   0.1       1.4   2.7e+03      21     110 ..     141     150 ..     121     170 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.6e-05
        CwsA 21 vtrGvvglgvesaqstaeelrrryresrlarelaaaqeai...aqelaaaqevvaglPqaledar 82
                vt G  g+g++sa++ ae+  + y ++r ++el aa   i   a+ + a + v+++l ++++  +
  CTQ27578.1 12 VTGGSAGIGLASAKALAEQGAKVYITGRRQEELDAAVRFIgpaARGIRADAAVLSDLDAVFATIA 76
                899********************************987654438999999999999988876654 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.4
        CwsA  21 vtrGvvglgvesaqstaeelrrryresrlarelaaaqeaiaqelaaaqevvaglPqaledarkkrrrkrplllagvavavlaGGavafsi 110
                   +G+                                                                                  fsi
  CTQ27578.1 141 AVKGTAN--------------------------------------------------------------------------------FSI 150
                 2233333................................................................................333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1952.96
//
Query:       CTQ27579.1  [L=405]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-32  110.2  54.6    9.7e-32  110.2  54.6    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2  54.6   5.4e-36   9.7e-32       3     330 ..      24     335 ..      19     341 .. 0.80
   2 !    3.3   9.8    0.0017        31     122     171 ..     341     390 ..     337     404 .. 0.83

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 5.4e-36
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgaga 101
                 ++af + ++  +   +l+ ala d++ ++s +gl++t+y+++ a+a+l+ G++ +r++r+ +l+  +l++al++l+++ + s+++l+ +r++ +l+ ga
  CTQ27579.1  24 ICAFSIVTSELAPVGMLS-ALAADFHQTESGVGLAVTAYGWVGALAALLSGAMPTRISRKALLVGLMLILALSCLAATRSYSIFALMSARMIGALAHGA 121
                 445555555555555555.9*************************************999999999999999955555348899*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpaw 200
                 ++++++ ++a+++p+ + g+a++++ +g+s+++++g +l++++a+++gWr++f+ +a++sl a+ +  l  + +p + + +   +             +
  CTQ27579.1 122 FWALIGLVAAQLVPPHRLGLATAIIFGGVSAASVVGVPLASFIATLAGWRLAFMSMALLSLAAAAV--LCSTLPPLAAPAPVRLRV------------Y 206
                 ***************************************************************664..666666666666655555............9 PP

       MFS_1 201 kallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr.lgr...rrrlllallllllaalglalla 295
                 + ++++p l  l  a +++ +++++++t++  +l    g + +  +++ll l+++ g+ + ++ag+l+dr l+       ll +++l+ll+a+ la+l+
  CTQ27579.1 207 RDIFRNPLLGGLYGATACIITAHFAAFTYIEPLLINLQGVP-ATALSGLLLLSGVSGLLGNVIAGKLIDRhLKGlifAALLLSGGALALLGAARLAPLP 304
                 *******776455555555568888999999999*******.455555688888888888********9964441212344444444444555555555 PP

       MFS_1 296 vtssavllllvlvliGfglgfvfpsllalasdlap 330
                 ++    ++ l+l+l+G g ++vf+ l++++ ++a+
  CTQ27579.1 305 FC----FSGLLLALWGAGIAIVFVGLQTWLLRSAG 335
                 55....44448999**************9999984 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0017
       MFS_1 122 aigllsagfslGailgpllggllasslgWravfyilaivsllafvlflll 171
                 a +++ a f++++  g+ +gg l++s+g + + +++a++++ + +l++ll
  CTQ27579.1 341 ASAIYVAIFNAAIGTGAFVGGQLIASAGLSEMVWLAAGIMVGSTLLIALL 390
                 789*************************9999999999999998853333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2908.83
//
Query:       CTQ27580.1  [L=293]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-23   82.7   4.0    3.4e-23   82.1   4.0    1.3  1  LysR_substrate  LysR substrate binding domain
    6.7e-17   61.2   0.0    1.2e-16   60.3   0.0    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0081   15.9   0.0       0.02   14.7   0.0    1.6  1  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.017   15.3   0.0      0.049   13.8   0.0    1.7  1  LigT_PEase      LigT like Phosphoesterase
      0.039   13.9   0.0      0.089   12.7   0.0    1.6  1  MarR            MarR family
      0.087   12.8   0.0       0.16   12.0   0.0    1.4  1  HTH_11          HTH domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   4.0   1.2e-26   3.4e-23       2     207 ..      90     282 ..      89     284 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 1.2e-26
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                     g+ +g +r+++++ la++++ p l+ ++ +yPe+++e+ +g   + ++ l+++++Dlair+  pe  +l+  +L++  + ++ ++d+ L + + +
      CTQ27580.1  90 GHVAGVVRLATSDNLATHFILPSLKGLLDHYPELRVEVLSGV--QPVN-LHRRDADLAIRMVKPEAGHLTLKRLGTVGFGVYGAADC-LVGADGL 180
                     6789**************************************..****.88999*********************************.****9** PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTC CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgr 191
                     sl++    +++ ++e +  +  + ++  ++ + +   +e+n+l a +++v+aGlG+++lp++++r+     +l++l+ +   + ++l+lv +++ 
      CTQ27580.1 181 SLSEA---DFVGWPETHQ-HLPAAQWITRTLRGRPCKVEANTLVAQVSAVSAGLGLGVLPHFMARA----SGLQCLQPEI-GADQTLWLVMHSDL 266
                     77777...****996655.4555557777766666668*************************966....89**777777.************** PP

                     CCHHHHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidflrea 207
                       s++vr ++d+l + 
      CTQ27580.1 267 AGSRRVRVLADHLIAL 282
                     ************9875 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   4.1e-20   1.2e-16       2      60 .]       8      66 ..       7      66 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 4.1e-20
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++ r+f+a+a++g++++AA+++++  ++vsr++ rLE++l+vpLf R++ g rLT+ Ge
  CTQ27580.1  8 DDARIFLAIARAGTLSGAADKMNMGIATVSRRLDRLEQALNVPLFSRHQSGYRLTDDGE 66
                6789*******************************************999*******97 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   6.7e-06      0.02      12      44 ..      19      51 ..      12      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.7e-06
                TT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30 12 ggnisatAkaLhvHrnTlryRLrrieellgldl 44
                 g +s +A+++++   T++ RL+r+e+ l+++l
  CTQ27580.1 19 AGTLSGAADKMNMGIATVSRRLDRLEQALNVPL 51
                578999***********************9998 PP

>> LigT_PEase  LigT like Phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.6e-05     0.049      18      45 ..     136     163 ..     134     171 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
                 HHHHHCCTTEEETSGGGSEEEEEEEEEE CS
  LigT_PEase  18 leralaklglkpvrpfnpHiTLaflgev 45 
                 l+r+ a+l +++v+p+  H+TL++lg v
  CTQ27580.1 136 LHRRDADLAIRMVKPEAGHLTLKRLGTV 163
                 566788999****************976 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     3e-05     0.089      24      44 ..      26      46 ..      20      46 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3e-05
                HHHHTS-HHHHHHHHHHHHHT CS
        MarR 24 akklgvskstvtrvldrLekk 44
                a+k+++ ++tv+r ldrLe++
  CTQ27580.1 26 ADKMNMGIATVSRRLDRLEQA 46
                899****************95 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.3e-05      0.16      22      55 .]      26      60 ..      19      60 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.3e-05
      HTH_11 22 AeeLnvSrrtvrrdIkaLeelg.vpIesepgrGYr 55
                A+++n+  +tv r++++Le ++ vp+ s+ ++GYr
  CTQ27580.1 26 ADKMNMGIATVSRRLDRLEQALnVPLFSRHQSGYR 60
                789999999*********88888***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2217.93
//
Query:       CTQ27581.1  [L=103]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.025   14.9   0.1      0.026   14.9   0.1    1.2  1  DUF4188       Domain of unknown function (DUF4188)
      0.096   13.2   0.1       0.14   12.7   0.1    1.2  1  Phage_tail_T  Minor tail protein T


Domain annotation for each model (and alignments):
>> DUF4188  Domain of unknown function (DUF4188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   2.9e-06     0.026      38      76 ..      36      75 ..       3      96 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.9e-06
     DUF4188 38 elGlLgaeslig.srevllvqYwrdvesLeafakseeHre 76
                + G L  ++  g   ++ l  Yw+d+ +++afa ++ H+ 
  CTQ27581.1 36 NRGALVRQENQGeWAHFFLATYWQDLAAVKAFAGEDYHVA 75
                4566655555533599**********************86 PP

>> Phage_tail_T  Minor tail protein T
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.5e-05      0.14      22      71 ..      45      90 ..      38      99 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
  Phage_tail_T 22 elgewaeffsensfsdalldaefstlkalvlslvtdkeldaddfsllsap 71
                  + gewa+ff   +++d+     f++  + v   + d+    + f lls+p
    CTQ27581.1 45 NQGEWAHFFLATYWQDLAAVKAFAGEDYHVAVTYPDD----EAFELLSDP 90
                  579*************************998765554....457777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 840.34
//
Query:       CTQ27582.1  [L=160]
Description: Glutathione peroxidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-42  141.0   0.0    1.1e-41  140.7   0.0    1.1  1  GSHPx     Glutathione peroxidase
    3.5e-05   23.7   0.0    4.6e-05   23.3   0.0    1.2  1  AhpC-TSA  AhpC/TSA family
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.026   14.2   0.0    1.2  1  Redoxin   Redoxin


Domain annotation for each model (and alignments):
>> GSHPx  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   0.0   1.9e-45   1.1e-41       1     108 []       4     111 ..       4     111 .. 0.99

  Alignments for each domain:
  == domain 1  score: 140.7 bits;  conditional E-value: 1.9e-45
                 GGGBEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGGGTEEEEEEEE-TTTT---S-GGGHHHTSSHTTT-SSEEB--BBSSSTT CS
       GSHPx   1 iyelsakdidgekvkleklrgkvvlivnvaskCglteqykeleelqkrykdkglvilgfPCnqfgkqepgsdeeikkfrqgkyevtfellekievnGek 99 
                 +y+l+a+ + g+++++  ++gkvvl+vn as+Cg+t+qy  le+l+k+y+ +glv+lgfPCnqfgkqepg  +ei++ ++ +y+v f+++ek++vnG  
  CTQ27582.1   4 FYQLTATRLRGQPLSMADYAGKVVLVVNTASHCGFTPQYAGLEALYKKYAAQGLVVLGFPCNQFGKQEPGGADEIEQTCHVNYGVSFPMFEKVDVNGPA 102
                 79************************************************************************************************* PP

                 B-HHHHHHH CS
       GSHPx 100 edplykflk 108
                 ++pl+++lk
  CTQ27582.1 103 AHPLFRYLK 111
                 *******98 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   7.7e-09   4.6e-05       7      68 ..       6      65 ..       2      99 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 7.7e-09
                --EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESS CS
    AhpC-TSA  7 dfelknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvd 68
                + ++++  g++ s++dy+gk+v+++ +++ +c ++  +   l++ly++++++g+ v+g  ++
  CTQ27582.1  6 QLTATRLRGQPLSMADYAGKVVLVVNTAS-HCGFT-PQYAGLEALYKKYAAQGLVVLGFPCN 65
                56788999***********7666666666.99987.67889****************98665 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.3e-06     0.026      11      67 ..       7      61 ..       2      70 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.3e-06
                CCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEE CS
     Redoxin 11 lplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvva 67
                l+ +   g+++s ++++gk+v+v+  ++ +c+   + +  le l++++++ g  v++
  CTQ27582.1  7 LTATRLRGQPLSMADYAGKVVLVVNTAS-HCGFTPQYA-GLEALYKKYAAQGLVVLG 61
                4556789*********************.***966655.9*********99988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1326.20
//
Query:       CTQ27583.1  [L=187]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        2.7    8.7   4.5        1.7    9.3   1.2    2.2  2  LPAM_1         Prokaryotic membrane lipoprotein lipid attachm


Domain annotation for each model (and alignments):
>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.2   9.3e-05       1.7       3      18 .]       3      18 ..       1      18 [. 0.89
   2 ?   -0.4   0.1      0.11     2e+03       3      13 ..     159     169 ..     159     170 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 9.3e-05
      LPAM_1  3 KillalgalllLsGCs 18
                K++l l+ +++L+GC+
  CTQ27583.1  3 KYVLSLVVVAILAGCT 18
                89999**********6 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.11
      LPAM_1   3 Killalgalll 13 
                 K+++ lga++l
  CTQ27583.1 159 KTISSLGAVAL 169
                 67777888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1585.26
//
Query:       CTQ27584.1  [L=427]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.9e-187  621.9   2.4   6.7e-187  621.7   2.4    1.0  1  DUF444    Protein of unknown function (DUF444)
  ------ inclusion threshold ------
      0.038   14.2   1.4         17    5.7   1.5    2.6  2  HALZ      Homeobox associated leucine zipper


Domain annotation for each model (and alignments):
>> DUF444  Protein of unknown function (DUF444)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  621.7   2.4  7.5e-191  6.7e-187       2     421 .]       4     421 ..       3     421 .. 0.99

  Alignments for each domain:
  == domain 1  score: 621.7 bits;  conditional E-value: 7.5e-191
      DUF444   2 iidrrlngknkslenrqRflrrvkeqikeavadavsersikdiskgekikipikdikepefeygkggeregVlpGnkefkeGdkierpeeggggggsge 100
                 +idrrlngknks++nrqRflrr+k+qik+++++a+++rs++di++ge+++ip++di+ep f++g+gg r++V+pGn++f++ d+ierp++ggggggsg+
  CTQ27584.1   4 FIDRRLNGKNKSAVNRQRFLRRYKAQIKQSISEAINKRSVTDIESGESVSIPTDDINEPMFHQGRGGLRNRVHPGNDHFVQNDRIERPQGGGGGGGSGQ 102
                 8********************************************************************************************999998 PP

      DUF444 101 g..seaGegedefefelsreEfldllfedLeLPdLekkklekveekktkragytrkGspsnldvkrtlrealkRrialkrpkeeelreleeelaeleae 197
                 g  s +Geg+def+f++s++E+ldllfedL+LP+L+k++ ++++e+kt+rag+t++G+p+n++v+r+l+++l+Rr+a++++k++elr+lee+l+++ ++
  CTQ27584.1 103 GqaSADGEGKDEFVFQISKDEYLDLLFEDLALPNLKKNQHRQLNEFKTHRAGFTSNGVPANISVVRSLQNSLARRTAMTAGKRRELRALEEDLEAISRS 201
                 888999*******************************************************************************************99 PP

      DUF444 198 eeekeseeleeleeeieeleerikripfidelDlRYrrvekepkpesnaVmfclmDvSGSMdetkkdlakrfFilLylFLkrkYekvevvFirHtteAk 296
                 e   +  e+e+l++ei+el+++i+r+pfid++DlRY+++ek+p+p+s+aVmfclmDvSGSMd+++kd+akrf+ilLylFL+r+Y++v+vv+irH+t+Ak
  CTQ27584.1 202 EP-VQLLEEERLRKEIAELRAKIERVPFIDTFDLRYKNYEKRPEPSSQAVMFCLMDVSGSMDQATKDMAKRFYILLYLFLSRTYKNVDVVYIRHHTQAK 299
                 87.666699****************************************************************************************** PP

      DUF444 297 eVdeeeFFysresGGTvvSsalelmkeiieerYppseWNiYaaqasDgdnwseDsekavellaekilplvqyfaYveitpsaseeeqtlweeyekvaee 395
                 eVde+eFFys+e+GGT+vSsal+lm+e++++rY+p++WNiYaaqasDgdnw++Ds+ + ella+kilp+v+y++Y+eit+   +++qtlw+eye+++++
  CTQ27584.1 300 EVDEHEFFYSQETGGTIVSSALKLMDEVVQARYDPAQWNIYAAQASDGDNWADDSPLCHELLAKKILPVVRYYSYIEITR---RAHQTLWREYEHLQAT 395
                 ********************************************************************************...**************** PP

      DUF444 396 eenfamakvkekediypvfrellkke 421
                 ++nfam++++++ediypvfrel++k+
  CTQ27584.1 396 FDNFAMQHIRDQEDIYPVFRELFHKQ 421
                 ***********************996 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.5    0.0019        17      27      42 ..     208     223 ..     205     224 .. 0.89
   2 ?    5.5   0.0    0.0022        20       5      20 ..     387     402 ..     385     404 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0019
        HALZ  27 enekLkaelqeLkekl 42 
                 e e+L++e++eL++k 
  CTQ27584.1 208 EEERLRKEIAELRAKI 223
                 789***********95 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0022
        HALZ   5 rDYdvLKasYdaLksd 20 
                 r+Y+ L+a +d+ +++
  CTQ27584.1 387 REYEHLQATFDNFAMQ 402
                 89*********98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1120  (0.0624686); expected 358.6 (0.02)
Passed bias filter:                      722  (0.04027); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3089.16
//
Query:       CTQ27585.1  [L=644]
Description: conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.1e-179  596.0   0.0   2.9e-179  595.5   0.0    1.2  1  AAA_PrkA      PrkA AAA domain
    1.4e-74  251.0   2.2    5.6e-74  249.0   2.5    1.8  2  PrkA          PrkA serine protein kinase C-terminal domain
    4.1e-05   24.0   0.0    0.00012   22.5   0.0    1.9  2  AAA_16        AAA ATPase domain
     0.0012   18.8   0.3      0.016   15.2   0.1    2.7  3  AAA_5         AAA domain (dynein-related subfamily)
     0.0093   16.2   0.0      0.048   13.9   0.0    2.2  2  AAA_22        AAA domain
  ------ inclusion threshold ------
       0.14   11.5   0.0       0.41   10.0   0.0    1.7  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
        1.1    9.4   6.8       0.46   10.5   0.9    2.7  2  Med31         SOH1


Domain annotation for each model (and alignments):
>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  595.5   0.0  1.1e-182  2.9e-179       2     358 .]      20     380 ..      19     380 .. 0.99

  Alignments for each domain:
  == domain 1  score: 595.5 bits;  conditional E-value: 1.1e-182
    AAA_PrkA   2 slaeyleivkedksvaksaaerlldlikdkglelvdtaederlsrifsnetikkypafeedffGleetiekiveyfraaaqrleerkqilyllGPvggG 100
                 +l+e+l+i+++d+s++++aaerll++i+++  ++vdta ++rlsr+fsn++i +ypafe +f+G+e++ie+iv+y+++aaq+lee+kqilyllGPvggG
  CTQ27585.1  20 TLQEFLTICRQDRSAYANAAERLLMAIGEP--VMVDTALEPRLSRLFSNRVIARYPAFE-EFYGMEDAIEQIVSYLKHAAQGLEEKKQILYLLGPVGGG 115
                 89****************************..99*************************.*************************************** PP

    AAA_PrkA 101 ksslverlkklleaapiyal....egsPvfeePlhli.peelrkkleeeygi...rlegllsPlatkrleeefgGdiekfkvekilfsilkrigiakve 191
                 kssl+erlk l++ +piy+l    e+sPv+++Pl+l+ p+e++++l++eygi   +l +++sP+a+krl +efgGdi+kf+v+k+++sil++ +iak+e
  CTQ27585.1 116 KSSLAERLKALMQRVPIYVLsangERSPVNDHPLCLFnPQEDAQILQKEYGIptrYLGTIMSPWAAKRL-HEFGGDITKFRVVKVWPSILEQVAIAKTE 213
                 ******************************************************99*************.***************************** PP

    AAA_PrkA 192 PgdennqdisalvGkvdirkleeysendpdaysysGalnranrGllefvemfkadikvlhplltatqegnyksteklslipfdgiilahsnesewkkfk 290
                 PgdennqdisalvGkvdirkle+y++ndpday ysGal+ran+G++efvemfka+ikvlhplltatqegny++te +s++pf+giilahsnesew +f+
  CTQ27585.1 214 PGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIILAHSNESEWVTFR 312
                 *************************************************************************************************** PP

    AAA_PrkA 291 snkknealldrivvvkvPyclrvseekkiyekllkeseladahiaPetlevlarfsiltrlkeseksd 358
                 +nk+nea+ldr+++vkvPyclr+see++iyekll++sel++a++aP tle+larfsil+rlke+e+s+
  CTQ27585.1 313 NNKNNEAFLDRVYIVKVPYCLRISEEIRIYEKLLNNSELTHAPCAPGTLETLARFSILSRLKEPENSS 380
                 *****************************************************************985 PP

>> PrkA  PrkA serine protein kinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.92   2.4e+03      35      76 ..     165     206 ..     155     235 .. 0.69
   2 !  249.0   2.5   2.2e-77   5.6e-74       1     257 []     382     636 ..     382     636 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.92
        PrkA  35 sGispRyvikilsealssseakeekcinpldvlealeeglke 76 
                  Gi++Ry+ +i+s   +++ ++    i+ + v+++  ++l++
  CTQ27585.1 165 YGIPTRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILEQ 206
                 499999999999988777666667777777777777777766 PP

  == domain 2  score: 249.0 bits;  conditional E-value: 2.2e-77
        PrkA   1 leKmklYdgeel..pdsleeedvkeLreeaeereGmsGispRyvikilsealssseakeekcinpldvlealeeglkeheviseeerekylefle.vvr 96 
                 ++Km++Ydge+l  +d++++ +++e+r+ a+++eGm+G+s+R+++kils+++  + +++e ++np++++++le+ +++ e++++e+ e+ylefl+ ++ 
  CTQ27585.1 382 YSKMRVYDGESLkdTDPKAK-SYQEYRDYAGVDEGMNGLSTRFAFKILSRVF--NFDHVEVAANPVHLFYVLEQQIER-EQFPQEQAERYLEFLKgYLI 476
                 58**********76666666.******************************9..7889********************.******************** PP

        PrkA  97 eeydervkkevqeAllyseeeqieelvenYldhveayikkekvkdpiTgeelepd..erflrsiEeqigiseeakkdFRrevikelaasalaregkkid 193
                  +y+e++ ke+q+A+l+s++e+ ++ +++Y+ +++++i++++++dp+Tg+  +++  +++l++iE+++gis+  +kdFR+e++++++++++++ g++++
  CTQ27585.1 477 PKYAEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDREslNAELEKIEKPAGISN--PKDFRNEIVNFVLRARANNSGRNPN 573
                 ************************************************************************..9************************ PP

        PrkA 194 ytsierlkealekklfedvkdllklisstktpdkeqqkkveevverLvekfgYceacArevleY 257
                 +ts+e+l++++ekk+f+++++ll++is++++ ++++qkk++++v+r++ek gY+++++r ++e+
  CTQ27585.1 574 WTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDRMMEK-GYTRKQVRLLCEW 636
                 ***********************************************555.***********98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   4.9e-08   0.00012       1      63 [.      77     142 ..      77     211 .. 0.89
   2 ?   -3.1   0.0       3.5     9e+03      98     127 ..     530     560 ..     483     568 .. 0.54

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 4.9e-08
      AAA_16   1 rlvGReeeleqLlsalervrsgrp...elvllsGesGvGKsslvrellralekdg.giflrgkcdql 63 
                 +++G e+ +eq+ s+l+ +++g +   ++++l G+ G GKssl+++l+ al ++  +++l+++ +++
  CTQ27585.1  77 EFYGMEDAIEQIVSYLKHAAQGLEekkQILYLLGPVGGGKSSLAERLK-ALMQRVpIYVLSANGERS 142
                 599**************999999999**********************.565564488898888777 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.5
      AAA_16  98 rekleeala.avpelagaeasrllellkrll 127
                 re l ++l+ + +++  + ++++++++ +++
  CTQ27585.1 530 RESLNAELEkIEKPAGISNPKDFRNEIVNFV 560
                 2222222221111222222256666666665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         1   2.6e+03      50      99 ..      15      74 ..       6      87 .. 0.66
   2 !   15.2   0.1   6.2e-06     0.016       3      31 ..     107     135 ..     105     141 .. 0.89
   3 ?   -0.4   0.0       0.4     1e+03      80     137 ..     267     323 ..     254     324 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1
                .......--------..........G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-S CS
       AAA_5 50 gttslvdsplvraar..........egeilvlDEveraesevlnsLlslleerrllleeg 99
                ++++++ +++ + +r          e  ++ ++E  +++++  ++L +l+++r +   + 
  CTQ27585.1 15 KDEEFTLQEFLTICRqdrsayanaaERLLMAIGEPVMVDTALEPRLSRLFSNRVIARYPA 74
                555555555555555555555555577777788888888888888888888887765555 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 6.2e-06
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvq 31 
                  L+Gp G gKs+laerl+a+++r   yv+
  CTQ27585.1 107 YLLGPVGGGKSSLAERLKALMQRVPIYVL 135
                 69*******************99888875 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS--....-TT-TTHHHHTT CS
       AAA_5  80 evlnsLlslleerrllleeggelvkaknddllerfrviatanpld...rslnelspalrsR 137
                 + +++L++ll   +    +g+e ++a +++      ++a +n+ +   ++ n+ ++a+++R
  CTQ27585.1 267 APIKVLHPLLTATQEGNYNGTEGISALPFN----GIILAHSNESEwvtFRNNKNNEAFLDR 323
                 445666666666666666688888888854....556666666669998888889999988 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.9e-05     0.048       4      30 ..     102     128 ..      99     160 .. 0.86
   2 ?   -2.4   0.0       2.1   5.3e+03      43      70 ..     538     566 ..     516     592 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.9e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqld 30 
                 +++il++ G++G GK+ l++rl+   +
  CTQ27585.1 102 KKQILYLLGPVGGGKSSLAERLKALMQ 128
                 899*******************98875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.1
      AAA_22  43 vfvtlpsst.sskdllrellralglelka 70 
                  +++ p++  ++kd+++e+++++ + + +
  CTQ27585.1 538 EKIEKPAGIsNPKDFRNEIVNFVLRARAN 566
                 45666666668999999999887765555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00016      0.41      25      47 ..     106     128 ..      86     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00016
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllp 47 
                   l l+Gp G GK+ la+rl++l+ 
    CTQ27585.1 106 LYLLGPVGGGKSSLAERLKALMQ 128
                   7799****************986 PP

>> Med31  SOH1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.9   0.00018      0.46       8      53 ..     434     483 ..     430     494 .. 0.84
   2 ?    0.6   0.9      0.22   5.6e+02      29      49 ..     498     519 ..     485     521 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
                 HHHHHHHCSHHHHHHTTSSSS....SSSTHHHHHHHGGGGGSTTCCCTT- CS
       Med31   8 leFvqsLanpaYlshLaqeky....ledeafiaYLkYLeywkepeYakfl 53 
                  + v++ anp +l ++ ++++    + +e+  +YL++L+ +  p+Ya+f+
  CTQ27585.1 434 FDHVEVAANPVHLFYVLEQQIereqFPQEQAERYLEFLKGYLIPKYAEFI 483
                 5679999***9999987776544447888899*****************8 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.22
                 SSSTHHHHHHHGGGGG.STTCC CS
       Med31  29 ledeafiaYLkYLeyw.kepeY 49 
                   ++ f +Y++Y ++w +++eY
  CTQ27585.1 498 YGQNIFDRYVTYADFWiQDQEY 519
                 45778999******99444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 4510.00
//
Query:       CTQ27586.1  [L=248]
Description: scaffolding protein for murein synthesizing machinery [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-51  175.6  10.4    1.8e-51  175.4  10.4    1.0  1  MipA       MltA-interacting protein MipA
    0.00025   21.2  11.3     0.0021   18.2  11.3    2.0  1  OMP_b-brl  Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> MipA  MltA-interacting protein MipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.4  10.4     2e-55   1.8e-51       1     213 []      28     248 .]      28     248 .] 0.88

  Alignments for each domain:
  == domain 1  score: 175.4 bits;  conditional E-value: 2e-55
        MipA   1 lGagagygps.ypgsdd..yellllPllfyegenfyldglsdggynlletdnfrlglslslslesg.......rdesda...lgdrktsleaGlfaeyr 86 
                 lGag+g+ ++ y   ++    ++++P+++ye enf+++gl  ggy+l+++ n +l++       ++       +++s++   l++rk++++aGl++ ++
  CTQ27586.1  28 LGAGVGVVEHpY---KQydADVYPVPVISYESENFWFHGLG-GGYYLWNDTNDKLSIT----AYWSpmyfkpgDSDSEQmrrLDKRKSTVMAGLSYVHN 118
                 7***********...44447899****************85.69****9997666555....333344557664444448899**************** PP

        MipA  87 tqvgllr...ladvsgahkGaea...lsasfslsgrwtlspgaglsyasskyndyyYGVsaaeaaasglpaYkagaglssvglglgasyrpltenwsll 179
                 t++g lr   + d++++++G ++   + +++   g++tl+pg+g++++s+++n yyYGVs  e+++sg ++Y+++++++++ l+l+a+yr +  +ws+ 
  CTQ27586.1 119 TPYGFLRttiAGDTLDNSNGINWdlaWLYRYTN-GNLTLTPGIGVEWNSDNQNEYYYGVSRHESRRSGMRSYDPDSSWNPY-LELSANYR-FLGDWSVY 214
                 *****8877766********8889666666666.9**********************************************.*******7.******** PP

        MipA 180 asasytrlsseiadSPlvesdnqvtaglgvaYrF 213
                 + a+ytrls+ei+dSP+v+++++  +++g++Y+F
  CTQ27586.1 215 GVARYTRLSDEITDSPMVDKSWSGLISTGITYTF 248
                 *********************************9 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2  11.3   2.3e-07    0.0021       4     163 ..       8     228 ..       6     248 .] 0.65

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.3e-07
   OMP_b-brl   4 lllaalsaaaaaassfggfyvggglgls..kvkvdgvgsds...........g.fgfgvgagyef....ndnvgveggls..y.sgdkdysgs...... 75 
                 +l ++++++a aa ++g+f +g+g+g++      ++++ d            + +  g+g+gy++    nd++++ +  s  y   ++++s +      
  CTQ27586.1   8 ALGVLIATSASAAHADGKFTLGAGVGVVehP--YKQYDADVypvpvisyeseNfWFHGLGGGYYLwndtNDKLSITAYWSpmYfKPGDSDSEQmrrldk 104
                 333344455666777799*******999643..446665545677777776544888999999877544557777666654424333333333477888 PP

   OMP_b-brl  76 .........................gktdikinllsvpvnagyafnlsdsvlpyggaGlgytkvevdvsgng...............asdsdtdfglgl 134
                                          g t  ++n  +  ++  y++  ++++ +  g+G+ ++    d+++ +               + d d+ +  +l
  CTQ27586.1 105 rkstvmaglsyvhntpygflrttiaGDTLDNSNGINWDLAWLYRYT-NGNLTLTPGIGVEWN---SDNQNEYyygvsrhesrrsgmrSYDPDSSWNPYL 199
                 8888889999999998888666664222223444445555666665.444566666666664...33333334555599999999999*********** PP

   OMP_b-brl 135 gaGveyaladnwslkaeYrytdlksdadn 163
                 ++ ++y++ ++ws+ +  ryt l+++ ++
  CTQ27586.1 200 ELSANYRFLGDWSVYGVARYTRLSDEITD 228
                 *********************99774333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1846.66
//
Query:       CTQ27587.1  [L=284]
Description: putative oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-57  194.4   0.1    6.2e-56  189.7   0.1    2.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.7   0.1   3.5e-60   6.2e-56       2     292 ..      17     271 ..      16     273 .. 0.94

  Alignments for each domain:
  == domain 1  score: 189.7 bits;  conditional E-value: 3.5e-60
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLg 98 
                   +glGtw +g + + ++++ +++lr+ +++G + +DtAe+Y +g +ee++G+a+      r+ v++++Kv      ++++  k+ +++++e+sl+rL+
    CTQ27587.1  17 IGLGTWYMGEH-AAQRQQEVAALRAGIDHGLTVIDTAEMYADGGAEEVVGQAIRG---LRDRVVLVSKV------YPWHAGKAAMHRACENSLRRLQ 103
                   9********98.*******************************************...***********......8888889*************** PP

                   -S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH.HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGG CS
  Aldo_ket_red  99 tdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka.kkkkkvkivavqveynllreleeegllelckkkgvpliaysplgg 194
                   tdy+D++llH+   + p + e+++a+e+lv eGkir +GvSn + e ++++ ++  +   +++qv y+l ++  e  ll+ c+++ +p++ay+pl++
    CTQ27587.1 104 TDYLDMYLLHW-RGDIP-LQETVEAMEKLVAEGKIRRWGVSNLDTEDMQALwRTADGEHCATNQVLYHLASRGIEYDLLPWCQQHSLPVMAYCPLAQ 198
                   **********8.57899.9********************************99999999*************************************9 PP

                   .GTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHH CS
  Aldo_ket_red 195 .Glltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeld 290
                    G l+                             + +++ ++a+ +g+++aql l++++ + +++ +ip+a +ie++ +n++al++ ls ee+a+ld
    CTQ27587.1 199 aGRLR-DGL------------------------FQHSDIINMANARGITVAQLLLAWVI-RHPGVLAIPKAASIEHVVQNAAALDIVLSGEELAQLD 269
                   55555.222........................23467889******************.678889******************************* PP

                   HH CS
  Aldo_ket_red 291 el 292
                   +l
    CTQ27587.1 270 RL 271
                   97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2035.13
//
Query:       CTQ27588.1  [L=294]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-43  148.1   0.1      4e-43  147.8   0.1    1.0  1  Aldose_epim  Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.8   0.1   2.3e-47     4e-43       2     278 ..      28     268 ..      27     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: 147.8 bits;  conditional E-value: 2.3e-47
                  EEEEEETTEEEEEECTCTTEEEEEEETT.STEESB-B-STHHHHHHSCCSSCEECSS-SEEETTEEEETTEEEECCCCBT...TTCEETBSGGGSB-E CS
  Aldose_epim   2 litlkngaglsakislyGAtllslkvpdkeqrevllgsddaeeylkdsyfgatlgrvanRianGeFeldGkpyqlpqnee...gknplHGgargreWe 96 
                  li ++++ +++a+++l+GA+lls+k+ +  ++evl++s++           +++  va R   G     G+p+++p++++   + +p HG+ar+ +W+
   CTQ27588.1  28 LIVIDHP-QVKASVALQGAHLLSWKPAG--EEEVLWLSNN----------TPFKQGVALR---G-----GVPICWPWFGPsaqQGLPSHGFARNLPWT 104
                  78999*9.6*******************..78********..........6*********...8.....***************************** PP

                  EEEEEE.TTEEEEEEEEEEETCHC...STSEEEEEEEEEEETTEEEEEEEEEEESSS-EEEEEEEEEEEETSSCTCTGGEEEEEEEEEEEECTTSGEE CS
  Aldose_epim  97 veevke.ddgvtvslvlkpdgeeg...ypgdlevrvtytLnednelkieyeatndgkptpfnltnHtYFnlsgesidshelqieadeylevdeelipt 190
                  +e + e d+gv +++ l+++ e +   +p+++++  +++L++++e+++e +++ ++     + ++H+YFn++    d+  +++++++   +d+     
   CTQ27588.1 105 LEGHDEdDSGVMLTFALQHSAE-TmklWPHEFTLYARFKLGKTCEIELEAHGEFET-----TSALHSYFNVG----DIAAVKVSGLGERYIDK----- 187
                  *****************77777.3369*****************888888888776.....9**********....*********88888887..... PP

                  EEEEECTTCCC.CCCSSEEHCSSETEEEEEEEESSCSEEEEEETTTTEEEEEEEETTSSEEEEEECTTTT.SEECCEEESSECTCETCCC CS
  Aldose_epim 191 gelkdvkgtpf.dfrqpkaigedlkglDhayllksklkaviidpdkksgiklevsttepalvvytgnflk.kylsreglaletqmlpdep 278
                       v++++   ++++ ++ +d  ++D++yl+      vi d+  +++i + +++++  +v ++++     ++ ++++++++ ++++e+
   CTQ27588.1 188 -----VNNAEEgVLSNGVQTFPD--RTDRVYLNAD-SCSVIHDDALNRTIDVVHHHQH-NVVAWNPGPALsVSMGDMPDDGYKTFVCVET 268
                  .....666666345889999888..7********9.9999999999999999999999.*******8888******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2162.98
//
Query:       CTQ27589.1  [L=331]
Description: glyceraldehyde-3-phosphate dehydrogenase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-73  244.7   0.0      4e-73  244.2   0.0    1.2  1  Gp_dh_C       Glyceraldehyde 3-phosphate dehydrogenase, C-ter
    3.1e-42  143.0   1.3    1.1e-41  141.3   0.4    2.1  2  Gp_dh_N       Glyceraldehyde 3-phosphate dehydrogenase, NAD b
    0.00026   21.1   1.4     0.0021   18.2   1.4    2.4  1  DapB_N        Dihydrodipicolinate reductase, N-terminus
  ------ inclusion threshold ------
      0.028   13.8   0.1      0.067   12.5   0.1    1.6  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.2   0.0     9e-77     4e-73       1     158 []     155     312 ..     155     312 .. 1.00

  Alignments for each domain:
  == domain 1  score: 244.2 bits;  conditional E-value: 9e-77
                 HHHHHHHHHHHHEEEEEEEEEEEECTTTSBSSSS--.SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS-H CS
     Gp_dh_C   1 LaplakvlndkfgikkglmttvhaytndQkllDgpskkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekevtv 99 
                 Laplakv+nd+fgi++glmttvha+t++Qk++Dgps+kd+r +r aa+niip+stgaakavg+Vlpel+gkl+g+A+rVPtpnvsvvdl+v+lek++++
  CTQ27589.1 155 LAPLAKVINDNFGIVEGLMTTVHATTATQKTVDGPSHKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAASY 253
                 8************************************************************************************************** PP

                 HHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGCEEETTTEEEEEEEE CS
     Gp_dh_C 100 eevnaalkeaaegalkgilsyteeelvssDlvgdphssifdaketivveenlvkvvawy 158
                 ee+++a+k+a+ega+kg+l+yte+++vs+D++g+  +s+fdak++i++++n+vk+v+wy
  CTQ27589.1 254 EEIKKAIKAASEGAMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWY 312
                 **********************************************************9 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3   0.4   2.4e-45   1.1e-41       1     100 [.       3     102 ..       3     103 .. 0.98
   2 ?   -0.0   0.0      0.25   1.1e+03      42      83 ..     274     318 ..     248     328 .. 0.72

  Alignments for each domain:
  == domain 1  score: 141.3 bits;  conditional E-value: 2.4e-45
                 CEEEEESTSHHHHHHHHHHHHHTTCEEEEEE-TS-HHHHHHHHHEETTTEC-SS-EEEETTEEEETTEEEEEE--SSGGGS-CHHHTSSEEEE-SSS-- CS
     Gp_dh_N   1 vkvainGfGRIGrlvlralleekelevvaindltdletlayllkyDsvhgrfkgeveaeeealvvngkkikvlaekdpeelpwkelgvdlVvestGvft 99 
                 +kv+inGfGRIGr+v+ra+ +++++e+vaindl d+e++ay+lkyDs+hgrf+g+ve+++ +lvvngkki+v+ae+dp++l+w+e+gvd+V e+tG+f 
  CTQ27589.1   3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDAEYMAYMLKYDSTHGRFDGTVEVKDGHLVVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFL 101
                 69***********************************************************************************************98 PP

                 S CS
     Gp_dh_N 100 d 100
                 +
  CTQ27589.1 102 T 102
                 6 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.25
                 HHHEETTTEC-SS-EEEE....TTEEEETTEEEEEE--SSGGGS-C CS
     Gp_dh_N  42 llkyDsvhgrfkgeveae....eealvvngkkikvlaekdpeelpw 83 
                  ++ D v   f+gev ++    ++ + +n++ +k+++  d +e  +
  CTQ27589.1 274 YTEDDVVSTDFNGEVCTSvfdaKAGIALNDNFVKLVSWYD-NETGY 318
                 5677888888999988877755666999999999887766.45555 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   1.4   4.6e-07    0.0021       1     101 [.       3     122 ..       3     132 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4.6e-07
                 EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHH..................HHSSSS--S-BEBSSHHHHHHH...-SEEEE-S-HH CS
      DapB_N   1 ikvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdag..................ellglgklgvavtddleevlek...advliDFTtpe 78 
                 ikv+++G+ Gr+G+ v +a+++++d+e+va  d  + e+ +  +                    +++ +k+ v+ + d ++++ +   +dv+ + T   
  CTQ27589.1   3 IKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDAEYMAYMLKydsthgrfdgtvevkdghLVVNGKKIRVTAERDPANLKWDevgVDVVAEATGIF 100
                 79******.*********************988777666665555666677777777777764444445777777777777766666777888888777 PP

                 HHHHHHHHHHHTT-EEEE--SS- CS
      DapB_N  79 avlenlklalekgvklViGTTGl 101
                  + e+++  + +g k V+  TG 
  CTQ27589.1 101 LTDETARKHITAGAKKVV-LTGP 122
                 777777777777666666.4555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.5e-05     0.067      38      70 ..       4      37 ..       2      54 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.5e-05
                  EEEEES-SHHHHHHHHHHH.HTT-EEEEESSSHH CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlk.afgmkviaydrskk 70
                  +vGi G+GrIG+ v + ++   +++++a++   +
    CTQ27589.1  4 KVGINGFGRIGRIVFRAAQkRSDIEIVAINDLLD 37
                  79****************9889999999987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2617.93
//
Query:       CTQ27590.1  [L=137]
Description: methionine sulfoxide reductase B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-54  182.6   0.1    2.8e-54  182.4   0.1    1.0  1  SelR          SelR domain
  ------ inclusion threshold ------
      0.034   14.3   0.6        6.6    7.0   0.1    2.4  2  zf-B_box      B-box zinc finger
      0.072   13.3   0.2       0.16   12.2   0.2    1.6  1  Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centrom


Domain annotation for each model (and alignments):
>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.4   0.1   4.7e-58   2.8e-54       1     120 [.       9     127 ..       9     128 .. 0.98

  Alignments for each domain:
  == domain 1  score: 182.4 bits;  conditional E-value: 4.7e-58
                 HHHCTSHCCHHHHHHHTT-SSTTSSSTSS--SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECTTSEEEEEEETTCECEEEEEEC CS
        SelR   1 elkkkLtpeqyevlrekgterpftgeyekekekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtslgmertevvcakcdahlGhvFe 99 
                 elk+ L+++q++v++++gte+pftg++ ++k++Gvy+c vc++pLf+s+tk+dsgcGwpsF+e++++ea+++ +d+s+gm+r+e++c +cdahlGhvF 
  CTQ27590.1   9 ELKNGLSEMQFYVTQHHGTEPPFTGRLLHNKKNGVYHCLVCDAPLFNSQTKYDSGCGWPSFYEPVSAEAIRYLTDNSHGMQRIEIRCGNCDAHLGHVFP 107
                 57899********************************************************************************************** PP

                 TSSSSS.SEEEEE-CCCEEEE CS
        SelR 100 dgpkpttgkrycinsvslkfk 120
                 dgp+pt g+ryc+ns+sl+f+
  CTQ27590.1 108 DGPQPT-GERYCVNSASLSFT 127
                 ****95.************97 PP

>> zf-B_box  B-box zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0011       6.6       9      25 ..      37      53 ..      35      53 .. 0.91
   2 ?    5.2   0.0    0.0041        24       8      25 ..      85     102 ..      84     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0011
    zf-B_box  9 HknkpatlfCedCqqpl 25
                H++k+  ++C +C++pl
  CTQ27590.1 37 HNKKNGVYHCLVCDAPL 53
                899999********997 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0041
    zf-B_box   8 eHknkpatlfCedCqqpl 25 
                  H+++++++ C +C+++l
  CTQ27590.1  85 SHGMQRIEIRCGNCDAHL 102
                 6999999*******9875 PP

>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   2.7e-05      0.16       2      75 ..      43     112 ..      42     136 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.7e-05
                   EEEETTTS-EEEECCCEEEEECCCEEEES---CCCEEEECEEEETTSTTEEEEEEEETTT--EEEEEEEECSCC CS
  Yippee-Mis18   2 vfqCkkCktilgdslqlvsegralnivvlkkvtrnvvvgkelvtdeegkctystlsCkgCnsvlGwkYksteee 75 
                   v++C  C ++l  s    ++g  +  + +++v+ + +   +  td+++  +  +++C +C+++lG ++ + ++ 
    CTQ27590.1  43 VYHCLVCDAPLFNSQTKYDSGCGWPSF-YEPVSAEAI---RYLTDNSHGMQRIEIRCGNCDAHLGHVFPDGPQP 112
                   678888888888888888777775444.444544433...33334333477899************99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1060.90
//
Query:       CTQ27591.1  [L=117]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-26   91.7   0.1      3e-26   91.3   0.1    1.1  1  DUF1315     Protein of unknown function (DUF1315)
  ------ inclusion threshold ------
       0.06   11.7   0.0      0.071   11.4   0.0    1.0  1  Birna_RdRp  Birnavirus RNA dependent RNA polymerase (VP1)


Domain annotation for each model (and alignments):
>> DUF1315  Protein of unknown function (DUF1315)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.1   3.4e-30     3e-26       1      73 [.      29     104 ..      29     112 .. 0.96

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 3.4e-30
     DUF1315   1 eellasltpevyqrlkqAvElGkWpdGrklteeQretcmqavmvyeakhlkeeerv.....GyikkkskeGeelkkee 73 
                 e++++s+tpevyqrl +AvElGkWpdG++lt+eQ+e ++q+vm+++a+ + +++++     G+++ ksk+  +lk+++
  CTQ27591.1  29 EQIIDSMTPEVYQRLATAVELGKWPDGVALTPEQKENSLQLVMLWQARYNTDAQHMtidtsGQMVMKSKQ--QLKEDF 104
                 69********************************************************************..999987 PP

>> Birna_RdRp  Birnavirus RNA dependent RNA polymerase (VP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     8e-06     0.071     524     579 ..      26      80 ..      17      89 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8e-06
                 EEEEEEEESHHHHHHHHHHT--SSSTTTTS-SS--SS----EEEEETTEEEEEETT CS
  Birna_RdRp 524 fkiereiedlreklreavekavqdGyladGselppekpgktveldllGwsatysrd 579
                 + ie+ i+ +  ++ + + +av+ G   dG+ l pe++ ++++l +l w a y  d
  CTQ27591.1  26 MDIEQIIDSMTPEVYQRLATAVELGKWPDGVALTPEQKENSLQLVML-WQARYNTD 80 
                 5799****************************************887.9**99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 895.19
//
Query:       CTQ27592.1  [L=114]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-12   45.1   8.3      1e-11   44.8   8.3    1.2  1  HNH             HNH endonuclease
  ------ inclusion threshold ------
      0.041   14.8   0.7        4.4    8.2   0.1    2.1  2  Ima1_N          Ima1 N-terminal domain
        1.9    8.4   6.7        3.8    7.5   6.7    1.5  1  Endonuclease_7  Recombination endonuclease VII


Domain annotation for each model (and alignments):
>> HNH  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   8.3   1.7e-15     1e-11       1      47 []      27      75 ..      27      75 .. 0.98

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 1.7e-15
         HNH  1 CeyCgrkfhks..ealevdHiipisqggaddieNlqllCksCHnkkhdr 47
                C +C r+f  s   +l+v+Hi++ + +++ d +N+++lC  CH+++h++
  CTQ27592.1 27 CGRCSREFVYSnlRELTVHHIDHDHSNNPEDGSNWEMLCLYCHDHEHSK 75
                ***********************************************85 PP

>> Ima1_N  Ima1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.005        30     115     133 ..      14      32 ..       3      34 .. 0.84
   2 ?    8.2   0.1   0.00073       4.4      66     114 ..      53     102 ..      36     112 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.005
      Ima1_N 115 eykkeleerYpqlCesCep 133
                  y+++  + +p +C +C++
  CTQ27592.1  14 GYREKALKLFPWVCGRCSR 32 
                 599**************97 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00073
      Ima1_N  66 eeaessssssllCskClknqelkvsklaeylpke.deddpeyeekeeale 114
                 ++ e  s+ ++lC  C ++++ k ++  +y ++  + +d++ +  e++++
  CTQ27592.1  53 NNPEDGSNWEMLCLYCHDHEHSKYTEADQYGSTVvAGEDAQKSVGEATYN 102
                 34455666789999999999999999999988776777766555555555 PP

>> Endonuclease_7  Recombination endonuclease VII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.7   0.00064       3.8      25      61 ..      26      70 ..       9      88 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00064
                    E-TTT--EEETT.S--E...EEEE-T....TT--.EEEEEHHHHH CS
  Endonuclease_7 25 kCaiCqerekek.tkal...avDHdH....ktgkvRgllCgsCNt 61
                    +C  C+ +   +  ++l   ++DHdH    + g   ++lC +C  
      CTQ27592.1 26 VCGRCSREFVYSnLRELtvhHIDHDHsnnpEDGSNWEMLCLYCHD 70
                    577777433322344445559*****88888899*********76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 927.59
//
Query:       CTQ27593.1  [L=417]
Description: putative chitinase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-65  221.4   1.4    2.7e-65  221.2   1.4    1.0  1  Glyco_hydro_18  Glycosyl hydrolases family 18


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.2   1.4   1.5e-69   2.7e-65       3     312 .]      26     400 ..      24     400 .. 0.86

  Alignments for each domain:
  == domain 1  score: 221.2 bits;  conditional E-value: 1.5e-69
                     EEEEEGGGGGSS.GC.....SHTTTESEEEEEEEEEEE...TTTEEEESSTTHH.................HHHHHHHHHHHHTSTT-EEEEEEE CS
                     xxxxxxxxxxxx.xx.....xxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   3 vgYysswesygn.ny.....lpsaklthiiyaFakidg...engkvvvsdwedl.................gnfeqlkklkkkknpgvkvllsiG 71 
                     vgY+   ++ ++        l+  ++th++y+F  i +   ++++                            +++l +l+ k+np++kvlls+G
      CTQ27593.1  26 VGYFNGGGDVTAgPGgdidkLDVRQITHLNYSFGLIYNdekDETNA-------AlkdpahlheiwlspkvqADLQKLPALR-KQNPDLKVLLSVG 112
                     78886555553323134455779***********998854422222.......1344556688899988888899******.************* PP

                     ETTTTTHHHHHHTSHHHHHHHHHHHHHHHHHCT-SEEEEEES-TTTS........TCHHHHHHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  72 GwtdssgfslaastdasrkkfadsvvsllrkygfDGiDidweypggn........pedkenytallkelrealdkakategkkllLsaavpasas 158
                     Gw++  gfs aa+t++sr+ f++s+ +++++yg+DGiD+dwe+p +         p+d++n+tallk lrea++       +++l+++av a+a 
      CTQ27593.1 113 GWGA-RGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWEFPVNGawglvasqPADRDNFTALLKSLREAVG-------EQKLVTIAVGANAE 199
                     ***8.9*************************************988899**********************665.......679*********** PP

                     HHHHHCHHHHHHHHTSEEEEETTTSSSTTSSBE--SS-SSB.......T...CSSHHHHHHHHHHTT--GGGEEEEEESEEE..........EEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......x...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxx RF
  Glyco_hydro_18 159 dlskgydlpkiakylDyvnvmtYDfhgswdnvtghhaplyd.......a...slnvdeavkeylkagvpakklvlGvpfygr..........awa 233
                     + +++ d++++a +l y+n+mtYD+      +  ++++lyd       a   ++++d+ v++yl+ag+++++++lG+ fygr          +w+
      CTQ27593.1 200 SPKSWVDVKAVAPVLNYINLMTYDMAYG---TQYFNSNLYDsshwptvAaadKYSADFVVNNYLAAGLKPSQMNLGIGFYGRvpkravepgiDWT 291
                     *66678******************9986...5569******98877651568******************************9999999999888 PP

                     ESSSSSS.....................TSTTTEEEHHHHHHHH...TEEEEEEEEETTTTEEEEEETT......EEEEE-SHHHHHHHHHHHHH CS
                     xxxxxxx.....................xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 234 lvsgadn.....................tkeegvlsykelkell...kkakakrkydskakapyvydge......efvsyDdpksikakadyvka 298
                      ++ ++n                      +++  ++y+++  +l    ++  ++++d++ak+p++  ++        +sy++p+s++ kady+ka
      CTQ27593.1 292 KADAQNNpvtqpyfgpqqialfaslgydLSKDTYVKYNDIVGKLlndPQKRFTEHWDDEAKVPWLSVQSaegkplFALSYENPRSVAIKADYIKA 386
                     88877778889999999999999999987777888999888888998777899************4444566798899***************** PP

                     TTESEEEEETGGGS CS
                     xxxxxxxxxxxxxx RF
  Glyco_hydro_18 299 kglgGvmiWsldqD 312
                     kgl+G+m+W+ ++D
      CTQ27593.1 387 KGLAGAMFWEYGAD 400
                     ***********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2989.91
//
Query:       CTQ27594.1  [L=213]
Description: nicotinamidase/pyrazinamidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-34  118.4   0.0    4.7e-34  118.1   0.0    1.1  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.1   0.0   2.6e-38   4.7e-34       2     174 ..       5     206 ..       4     207 .. 0.94

  Alignments for each domain:
  == domain 1  score: 118.1 bits;  conditional E-value: 2.6e-38
  Isochorismatase   2 alvviDmqndfveegvkeseeisavveninkllkaarkagipviftrdvhe...............leevkgdlderkaaphfkpgttgaelvp 80 
                      al+++D+qndf+++g+ +++e + +ve +n l++   ++g p+++++d h+               +e     l + +++ h+++ ++ga+l+p
       CTQ27594.1   5 ALLLVDLQNDFCAGGALAVPEGDSTVEVANALIDWSLARGEPIVASQDWHPadhgsfasqhqvepyTEGELDGLAQTFWPDHCVQHSEGAALHP 98 
                      9**************************************************************887777777778899**************** PP

  Isochorismatase  81 elaplegdvvvdKt......rfsaf......agtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaals..pelhdaal 160
                       l++++   v++K        +saf       +t+ld +L+ +gi ++ + G+atd+CV+ t++dal lGy v v++D++ +++  p++  +a+
       CTQ27594.1  99 LLKQQAIAAVFHKGqnrlidSYSAFfdnghrQKTELDGWLRGQGIVELTVLGLATDYCVKFTVLDALALGYAVNVITDGCRGVNlqPQDSSQAF 192
                      *************9999999****************************************************************6556677888 PP

  Isochorismatase 161 krlkqafatvitte 174
                       ++++a+at+ t +
       CTQ27594.1 193 MEMAAAGATLYTLD 206
                      89999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1690.41
//
Query:       CTQ27595.1  [L=339]
Description: cytoplasmic L-asparaginase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-65  218.6   0.0    7.7e-65  218.0   0.0    1.2  1  Asparaginase    Asparaginase, N-terminal
    3.1e-32  111.2   0.3    5.1e-32  110.5   0.3    1.4  1  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
  ------ inclusion threshold ------
      0.049   13.2   0.0       0.11   12.0   0.0    1.6  1  WHIM1           WSTF, HB1, Itc1p, MBD9 motif 1


Domain annotation for each model (and alignments):
>> Asparaginase  Asparaginase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.0   0.0   1.3e-68   7.7e-65       2     183 ..       6     187 ..       5     194 .. 0.91

  Alignments for each domain:
  == domain 1  score: 218.0 bits;  conditional E-value: 1.3e-68
                   EEEEEEESGGGEEECTTS--CCEES-HHHHHCCTTTCCCCSEEEE.........EEEEEE-GGG--HHHHHHHHHHHHHHCCT-SEEEEE--STTHH CS
  Asparaginase   2 vlvlatGGTiasekdesggalapalsaeellealpelekiaeles.........eqlanidSsnmtpadwlklaeaieealeeydgfVvlhGTDTla 89 
                   ++v +tGGTi+++++e+g  + p   +++ l++   l+ ++e++          e+ + +dSs+mtp+dw+++a++i++++eeydgfV+lhGTDT+a
    CTQ27595.1   6 IYVAYTGGTIGMQRSEHG--YVP---VSGHLQRQ--LALMPEFHRpempdftihEYHPLMDSSDMTPEDWQHIADDIRSHYEEYDGFVILHGTDTMA 95 
                   899**************9..888...55556555..555566666666778999******************************************* PP

                   HHHHHHHHHEES.SSEEEEE--SS-TTSTT-SHHHHHHHHHHHHHCGGTTSECEEEETTEEEETTTEEE-BSSSSS-EEETTT--SEEEETTEE CS
  Asparaginase  90 ytAsaLslmlknldkpvvltGsqrplselrsDgpeNlldAllvaasseriagvlvvfngkllranrvtKvhtssldaFespnlgplaevegskv 183
                   +tAsaLs+ml+nl+kpv++tGsq+pl elrsDg+ Nll+Al+vaa++ +i++v+++fn++l+r+nr+tK h++ +daF spnl+pl e  g ++
    CTQ27595.1  96 FTASALSFMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANY-PINEVALFFNNRLFRGNRTTKAHADGFDAFASPNLAPLLEA-GIHI 187
                   ***********************************************.**************************************988.6655 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.3   8.5e-36   5.1e-32       3     114 .]     213     326 ..     211     326 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 8.5e-36
                     EEEE--TT--HHHHHHHHHTT--EEEEEEBTTTB--H..HHHHHHHHHHTTT-EEEEEESSSBS-----H.....HHHHHTEEE-TT--HHHHHH CS
  Asparaginase_C   3 vvlklhpgmdtkvlkallkkgakGvvlegtGvGnlps..allealkeakargivvvatsqcpsgsvsnseyeagkelerlgvisaddmtpeaari 95 
                      v++++pg++++v++++l++ +k+++l ++GvGn+p+  +++++l+ea +rgivvv+ +qc+sg v+++ y++g++l ++gvis+ dmt ea  +
      CTQ27595.1 213 GVVTIYPGISADVVRNFLRQPVKALILRSYGVGNAPQngEFIQVLAEASQRGIVVVNLTQCMSGKVNMGGYATGNALAQAGVISGFDMTVEATLT 307
                     6899********************************999******************************************************** PP

                     HHHHHCTT---HHHHHHHH CS
  Asparaginase_C  96 kLmlllgkgldpaevrklf 114
                     kL +ll+++ld +++r+ +
      CTQ27595.1 308 KLHYLLSQQLDVDAIRAAM 326
                     ****************987 PP

>> WHIM1  WSTF, HB1, Itc1p, MBD9 motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.9e-05      0.11      16      44 ..     297     325 ..     288     327 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.9e-05
                 CCCS-HHHHHHHHHHHHHHHCCC-CCHHH CS
       WHIM1  16 YyeLspeeklkiLkiLcdlllsssavRee 44 
                 ++++++e  l++L++L +++l+  a+R  
  CTQ27595.1 297 GFDMTVEATLTKLHYLLSQQLDVDAIRAA 325
                 79************************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2790.73
//
Query:       CTQ27596.1  [L=617]
Description: protease IV (signal peptide peptidase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-98  325.2   0.1    2.3e-51  173.8   0.0    2.3  2  Peptidase_S49  Peptidase family S49
    3.8e-07   30.2   0.2    8.7e-05   22.5   0.2    2.6  2  CLP_protease   Clp protease
    0.00022   20.4   0.1    0.00045   19.3   0.1    1.4  1  SDH_sah        Serine dehydrogenase proteinase
     0.0097   15.2   0.6       0.96    8.7   0.3    3.1  3  ECH_1          Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.3   0.0   1.7e-47   7.7e-44       2     149 ..     140     296 ..     139     300 .. 0.92
   2 !  173.8   0.0   5.1e-55   2.3e-51       2     154 .]     391     542 ..     390     542 .. 0.98

  Alignments for each domain:
  == domain 1  score: 149.3 bits;  conditional E-value: 1.7e-47
                    HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCC..CTTSS--HHHHHHHHHHHHHH CS
  Peptidase_S49   2 akkakkPvvasaenvaaSggYylasaadkivanpstivgsiGvitqllnlenlldklgvevqvvkaGeyksav..slrrelteeereilqrlldet 95 
                    +++++kPv+a+++++++ g+Yylas+a+ki+++p++ v+++G++t++l++++lldkl+v+++v+++G+yksav  ++r+++++++re+ +r+++e+
     CTQ27596.1 140 FRDSGKPVYAVGSSYSQ-GQYYLASFANKIWLSPQGEVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVepFIRDDMSPAAREADSRWIGEL 234
                    899**************.****************************************************************************** PP

                    HHHHHHHHHHHHTS-HHHHHCHHCC........HEEEHHHHHHTTSSSEETSHHHHHHHHHH CS
  Peptidase_S49  96 yqqFvqtVaknRnlsveqvdkiAeg........rvltgqqAlklgLvdelgtvddavaelee 149
                    +q++++t+a+nR+++++q+ + A+g           t++ Al+++Lvdel t++++ + l +
     CTQ27596.1 235 WQNYLNTIAANRQITAQQLFPGAQGiidglrkvGGDTAKYALDNKLVDELATSTEVEKALTK 296
                    *************************9955532222366778899999999999999888776 PP

  == domain 2  score: 173.8 bits;  conditional E-value: 5.1e-55
                    HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--HHHHHHHHHHHHHHHH CS
  Peptidase_S49   2 akkakkPvvasaenvaaSggYylasaadkivanpstivgsiGvitqllnlenlldklgvevqvvkaGeyksavslrrelteeereilqrlldetyq 97 
                    ak+a+kPvv+s++++aaSggY++++ ad+ivanpst++gsiG++  + ++en l ++gv++++v+++ ++++ s +++l++e ++ +q ++++ yq
     CTQ27596.1 391 AKAAGKPVVVSMGGMAASGGYWISTPADYIVANPSTLTGSIGIFGVINTVENTLGSIGVHTDGVATSPLADV-SSTKALPPEVQQLMQLSIENGYQ 485
                    6899*******************************************************************9.999******************** PP

                    HHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCHCC CS
  Peptidase_S49  98 qFvqtVaknRnlsveqvdkiAegrvltgqqAlklgLvdelgtvddavaeleelakvk 154
                    +F++ Va++R+ + e++d+iA+g+v+tg++A+++gLvd+lg +ddava+++elak+k
     CTQ27596.1 486 RFITLVANARKSTPEKIDQIAQGHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKLK 542
                    *****************************************************9985 PP

>> CLP_protease  Clp protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.2   1.9e-08   8.7e-05      43      96 ..     361     417 ..     330     426 .. 0.82
   2 !    4.8   0.0    0.0051        23     136     178 ..     484     525 ..     470     528 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.9e-08
                   H-SSS-EEEEEEE--B-HHHHHHHHHHHHHSSS..-EEEEEE.EEEETHHHHHHHTS CS
  CLP_protease  43 edpdkdillyinspGGsvtaglaIydtmqyikp..dvsticl.GlaaSmgslllaag 96 
                     ++k i+l +nspGGsvta+  I + ++  k+  + +++ + G+aaS g  + + +
    CTQ27596.1 361 DPKIKAIVLRVNSPGGSVTASEIIREELAAAKAagKPVVVSMgGMAASGGYWISTPA 417
                   557899**********************9998733334444459****999887655 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0051
                   HHHHHHHHHHHHTS-HHHHHHHHCSTEEEEHHHHHHHTSSSEE CS
  CLP_protease 136 kerlneilakhtgqslekiekdldrdtflsaeeAveyGLidev 178
                    +r ++++a++ + ++eki +   + ++ + e+A++ GL+d+ 
    CTQ27596.1 484 YQRFITLVANARKSTPEKIDQI-AQGHVWTGEDAKANGLVDSL 525
                   5778889999999999999875.56667789**********86 PP

>> SDH_sah  Serine dehydrogenase proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1     1e-07   0.00045      82     154 ..     355     430 ..     348     435 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1e-07
     SDH_sah  82 lrairltpkdkpidliihtpGGlvlaatqiakalkehkaktr.viv..phyamsGGtlialaadeiildenavlGp 154
                 +r  rl pk k i l + +pGG v a++ i + l + ka  + v+v     a sGG  i+  ad i+ ++ ++ G 
  CTQ27596.1 355 IRDARLDPKIKAIVLRVNSPGGSVTASEIIREELAAAKAAGKpVVVsmGGMAASGGYWISTPADYIVANPSTLTGS 430
                 68899*****************************9999875524441156889**************999887775 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.016        71      20      47 ..      91     118 ..      87     146 .. 0.86
   2 !    8.7   0.3   0.00021      0.96      79     117 ..     386     424 ..     377     450 .. 0.77
   3 ?   -2.0   0.0      0.39   1.8e+03     156     187 ..     508     539 ..     496     575 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.016
                 E-HHHHHHHHHHHHHHHHSTTECEEEEE CS
       ECH_1  20 lsaelltEliqalekleddksvravvLt 47 
                 l+++ l++++q + +++dd++++++vL 
  CTQ27596.1  91 LQENSLFDIVQTIRQAKDDRNITGIVLD 118
                 56777899******************96 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00021
                 HHHHHHHHSSSEEEEEE-SEEETHHHHHHHHSSEEEEET CS
       ECH_1  79 elwtklytvpkpviaavnGaaigGGlelalacDiviaad 117
                 e + ++    kpv+  + G a+ GG  +   +D+++a  
  CTQ27596.1 386 EELAAAKAAGKPVVVSMGGMAASGGYWISTPADYIVANP 424
                 56667778889************************9864 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.39
                 T-EEEHHHHHHCTSSSEEESGGGHHHHHHHHH CS
       ECH_1 156 gkkisaqealkvGlvdkvvpeeqlleealela 187
                 g+  ++++a+  Glvd     ++ + +a ela
  CTQ27596.1 508 GHVWTGEDAKANGLVDSLGDFDDAVAKAAELA 539
                 55678899999999998877666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 4771.83
//
Query:       CTQ27597.1  [L=183]
Description: putative oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-24   84.8   0.0    7.7e-24   84.6   0.0    1.0  1  Nitroreductase  Nitroreductase family
      0.008   15.8   0.0        2.7    7.5   0.0    2.2  2  TM1586_NiRdase  Putative TM nitroreductase


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0   8.6e-28   7.7e-24       2     169 ..       8     161 ..       7     162 .. 0.96

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 8.6e-28
                     HH--B---B-S----HHHHHHHHHHHHTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSEEEEE CS
  Nitroreductase   2 rkRrSiRkFddepvpkeelekileaarraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapvlivi 96 
                     ++RrS   + +  +  e+le+il+a+ raP +g lqpwrf+++  ++ r+++ +++ + +++a ++++ +          ka+ a ++ap++i +
      CTQ27597.1   8 LNRRSASRLAEPAPAGEQLENILRAGLRAPDHGTLQPWRFFII-ADDGRERFSQLLEKGAREAGQDEKGIE---------KARNAPFRAPLIITV 92 
                     5799999999999******************************.99********************99885.........588************ PP

                     ---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEEE CS
  Nitroreductase  97 vatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliavG 169
                          +  +++++  ++++ ++ag+a++ +++aA a+G+  ++ +g   ++++vr+ ++  ++++iv+++ +G
      CTQ27597.1  93 ----VARCEDHPKVPRWEQEMSAGCAVMAMQMAALAQGFNGIWRSGALTESPVVRAGFECREQDKIVGFLYLG 161
                     ....888999************************************************************999 PP

>> TM1586_NiRdase  Putative TM nitroreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0   0.00068       6.1     142     186 ..      10      52 ..       7      83 .. 0.80
   2 !    7.5   0.0    0.0003       2.7      80     136 ..     107     166 ..      99     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00068
                     ---HHHHBSS-GGGS-HHHHHHHHHHHTS--GGG----EEE.E-S CS
  TM1586_NiRdase 142 rkpleelcevkeeelpewfkeileaarlAPsAlNqqpwrfelkdd 186
                     r++++ l e     ++e++++il+a + AP     qpwrf + +d
      CTQ27597.1  10 RRSASRLAEPA--PAGEQLENILRAGLRAPDHGTLQPWRFFIIAD 52 
                     56666666544..4689**********************965444 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0003
                     HHHHHHHHHHHHHHHHHHTT-EEEEES--SST..............T-S-EEEEE-BS-- CS
  TM1586_NiRdase  80 leekaGYygeqlvLkltalGlgtcWvggtykk...kkakvelkkgeklvivIalGyaktk 136
                      e+ aG     + + + a+G++  W +g   +   ++a +e ++++k+v ++ lG ++ k
      CTQ27597.1 107 QEMSAGCAVMAMQMAALAQGFNGIWRSGALTEspvVRAGFECREQDKIVGFLYLGTPQLK 166
                     57889999999**************98877765688999****************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1406.54
//
Query:       CTQ27598.1  [L=58]
Description: hypothetical protein CH1034_190081 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 462.79
//
Query:       CTQ27599.1  [L=248]
Description: Non-specific acid phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-15   55.8   0.0    6.8e-15   55.0   0.0    1.3  1  PAP2        PAP2 superfamily
  ------ inclusion threshold ------
       0.23   11.6   0.4       0.63   10.2   0.1    1.8  2  RANK_CRD_2  Receptor activator of the NF-KB cysteine-rich rep


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   7.6e-19   6.8e-15      16     130 ..     129     229 ..     114     234 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 7.6e-19
        PAP2  16 tsvlKdlvgrpRPfflaeetkldtqvstletseskeakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvalsRlylgvHflsDvl 114
                 t  +K  + r RPf+     +++t+ + + ++     + s+PSgH+++++a al+la++ +++ +          +l    + + sR+++g+H+ sDv 
  CTQ27599.1 129 TRSAKEKYMRIRPFAFYGVSTCNTTEQDKLAK-----NGSYPSGHTSIGWATALVLAEINPQRQNE---------ILKRGYELGESRVICGYHWQSDVD 213
                 445699999***************98887765.....7899*************************.........9*********************** PP

        PAP2 115 aGlliGialaalayrl 130
                 a+ ++G a++a +++ 
  CTQ27599.1 214 AARIVGSAVVATLHTN 229
                 *********9988875 PP

>> RANK_CRD_2  Receptor activator of the NF-KB cysteine-rich repeat domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.96   8.6e+03      10      18 ..      19      27 ..      17      30 .. 0.75
   2 ?   10.2   0.1     7e-05      0.63      27      39 ..     203     215 ..     200     216 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.96
  RANK_CRD_2 10 LveVnpGNr 18
                   V pGN 
  CTQ27599.1 19 FALVPPGND 27
                56799**96 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 7e-05
  RANK_CRD_2  27 taGYHWsedcdcC 39 
                 + GYHW+ d+d+ 
  CTQ27599.1 203 ICGYHWQSDVDAA 215
                 57********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1903.11
//
Query:       CTQ27600.1  [L=347]
Description: selenophosphate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-30  106.1   0.7    2.5e-30  105.7   0.7    1.2  1  AIRS_C    AIR synthase related protein, C-terminal domain
    9.8e-19   67.8   0.7    9.8e-19   67.8   0.7    2.8  3  AIRS      AIR synthase related protein, N-terminal domain


Domain annotation for each model (and alignments):
>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.7   2.8e-34   2.5e-30       1     152 [.     169     341 ..     169     345 .. 0.90

  Alignments for each domain:
  == domain 1  score: 105.7 bits;  conditional E-value: 2.8e-34
                 STTEEEEEEETSSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHH..HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHH CS
      AIRS_C   1 kpGdvliltgslGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaal..kglvkaahDvTgGGLlgalaemapasgvgaeidldkvpif 97 
                 ++G++l+lt++lG+g+++t++k+ +l++e++          l+++t+++ ++a aa+   ++vka++DvTg+GLlg+l+e+++++gv+a++ ++++p +
  CTQ27600.1 169 QAGCKLYLTKPLGIGVLTTAEKKSLLKPEHQG---------LATETMCQMNLAGAAFaaIDGVKAMTDVTGFGLLGHLSEVCRGAGVQAQLRYADIPKL 258
                 68************************999987.........9999*************************************************77777 PP

                 HHHHHHHHHHHC.............................STTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEESSSEE CS
      AIRS_C  98 delesplemlls.............................ensGrllvavppeeadavlaileeeglpeaavIGevtakeels 152
                   +e+ + ++ +                             ++sG+ll+av pe++++v a+++e g+ + a IGe++  ++++
  CTQ27600.1 259 PGVEDYIAAGAVpggtgrnfasyghlmgemptewrdllcdpQTSGGLLLAVTPEAEAEVQAAAAEFGI-KLAAIGELVTARGGR 341
                 777544444444777788888888888*****************************************.7*******9987765 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.7   1.1e-22   9.8e-19       1      94 []      50     157 ..      50     157 .. 0.93
   2 ?    2.6   0.0     0.024   2.1e+02       8      64 ..     186     246 ..     169     257 .. 0.79
   3 ?   -1.1   0.2      0.34   3.1e+03      57      72 ..     312     327 ..     259     344 .. 0.54

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 1.1e-22
                 SSSEE........EEEEEEEE.EECCTCCCCHHHHHHHHHHHHHHTTTEEEEEEEEEEEEC.......HHHHHHHHHHHHHHHTT-EEEEEEEEEESSE CS
        AIRS   1 dDaav........vvttdshnrpvlvepvhfiGakavavnlsDlaamGArPlalllslalp.......wleevvrglaeaaeelgvplvgGdtsfsnep 84 
                 dDaav        +v+t +++ p++ +p++f G++a+++++sD++amG++P++++  l +p       +++evv+g + a++++g++l+gG++   +ep
  CTQ27600.1  50 DDAAVydlgngtsIVSTTDFFMPIVDNPFDF-GRIAATNAISDIFAMGGKPIMAIAILGWPintlapeIAREVVEGGRFACQQAGIALAGGHSIDAPEP 147
                 8999666677777566655************.********************99********************************************* PP

                 EEEEEEEEEE CS
        AIRS  85 tisvtavGlv 94 
                 +  ++++G+v
  CTQ27600.1 148 IFGLAVTGVV 157
                 ********97 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.024
                 EEEEEE.EECCTCCCC..HHHHHHHHHHHHHHTTTEEEE.EEEEEEEEC...HHHHHHHHHHH CS
        AIRS   8 ttdshnrpvlvepvhf..iGakavavnlsDlaamGArPl.alllslalp...wleevvrglae 64 
                 tt   ++++l++p h   +++++  +nl   a    + + a++++  ++    l+ev+rg + 
  CTQ27600.1 186 TTA--EKKSLLKPEHQglATETMCQMNLAGAAFAAIDGVkAMTDVTGFGllgHLSEVCRGAGV 246
                 444..57888888777667777788888888888888888999*****999999999999865 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHTT-E CS
        AIRS  57 evvrglaeaaeelgvp 72 
                 e+ +++++aa+e+g++
  CTQ27600.1 312 EAEAEVQAAAAEFGIK 327
                 3334445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       212  (0.0118244); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2917.01
//
Query:       CTQ27601.1  [L=648]
Description: DNA topoisomerase III [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.8e-112  375.8   0.0   3.3e-112  375.5   0.0    1.0  1  Topoisom_bac  DNA topoisomerase
    5.8e-17   61.8   0.0    1.2e-16   60.7   0.0    1.6  1  Toprim        Toprim domain
  ------ inclusion threshold ------
      0.031   14.4   0.0       0.66   10.2   0.0    2.4  2  FYRC          F/Y rich C-terminus
       0.12   12.9   0.0        0.5   10.9   0.0    2.0  2  Toprim_4      Toprim domain


Domain annotation for each model (and alignments):
>> Topoisom_bac  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.5   0.0  7.3e-116  3.3e-112       6     413 .]     158     593 ..     153     593 .. 0.93

  Alignments for each domain:
  == domain 1  score: 375.5 bits;  conditional E-value: 7.3e-116
  Topoisom_bac   6 lvdaaeaRrelDwliGinlsrlltk...klkg.kkvlsaGRVqtptLaliveRereienFvpeeyweveatl.kkekkeke.........kkkkkkk 88 
                   l  +a aR+++Dwl+Gin++r++t+   ++ g ++vls+GRVqtp+L+l+v+R++eienFv +++++v+a++ + +++++          +  ++++
    CTQ27601.1 158 LCVSALARARADWLYGINMTRAYTLlgrNA-GyQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFDVKAHIvTPQEERFVatwvpseacEPYQDEE 253
                   67799********************88444.45**************************************966565555599*******999**** PP

  Topoisom_bac  89 erikdkeeaeaileklkkkeakvesvekkekkkppplpfdtttLqkeasrklglsakktlsiaqkLYekaglitYpRTdstrlsee..aelkailea 183
                   +r+ ++  ae ++++++ + a v+ +++k+ ++p+plpf++++Lq ea++++g+sa+++l+i+qkLYe+++litYpR+ds++l+ee  a   a+l+a
    CTQ27601.1 254 GRLLHRPLAEHVVKRIEGQPAIVTGYNDKRDSEPAPLPFSLSALQIEAAKRFGFSAQNVLDICQKLYETHKLITYPRSDSRYLPEEhfAGRHAVLNA 350
                   ****************8889******************************************************************98667899999 PP

  Topoisom_bac 184 lakkygkeylefaekllkktkkksvvknkkveaHeAIrPteelpklkelsddekklYelIvrrflaslmkdakyeettvkleveeeefkasgktile 280
                   +a +  +++l+ ++ ++ + +++ ++++kkv+aH+AI+Pt++ + + +l+d+e+k+Y+lI+r++l+++ +da++++ +++le+++ +f a+ + + e
    CTQ27601.1 351 IAVH-AADLLP-QPVVDPEIRNR-CWDDKKVDAHHAIIPTARSS-QVKLTDNEAKVYTLIARQYLMQFCPDAVFRKCQIDLEIANGKFVAKARFLAE 443
                   9986.445666.56666666655.89**************7766.689************************************************* PP

  Topoisom_bac 281 kGfkkvykeekkeeeee..elpelkegeevkvkeveleekkTkppkryteasLikameka.................giGtpaTraeiieklvergY 358
                   +G++++  +++ +ee++   lp +++g+e+ ++  e+ e++T+pp ++t+a+L++am                    g+Gt+aTra iie l++rg+
    CTQ27601.1 444 AGWRTLLGSKERDEENDgtPLPVVAKGDELLCERGEVVERQTQPPRHFTDATLLSAMTGIarfvqdkdlkkilratdGLGTEATRAGIIELLFKRGF 540
                   *******877777665588****************************************************************************** PP

  Topoisom_bac 359 verkkkslvptelGkalvellekfkdlvspelTaeleekLdeIaegkadakevld 413
                   + +k+++++ +e G+al++ l+  +    p++Ta++e+ L +I+e +  ++++++
    CTQ27601.1 541 LSKKGRYIHSSEAGRALIHSLP--EMAGRPDMTAHWESVLTQISEKQCRYQDFMQ 593
                   ***98****************9..5699************************996 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   2.8e-20   1.2e-16       2     101 ..       3     135 ..       2     137 .. 0.87

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 2.8e-20
                 EEEESSHHHHHHHHHTHT............STEEEEEEESSSSEEEHS.................TTEEEEE..ECTTTHHHHHHHHHHHHHHSEEEEE CS
      Toprim   2 lvivEgpsdaktiakalg............sgfqavtaslGhildlet.................efkpvye..eiedkkkvlkalkelakradeiila 69 
                 l+i+E+ps  ++ia +l             +++q+vt+++Gh+l++++                 +++++++   +++ +k+l+++k+l+ +a+e+i a
  CTQ27601.1   3 LFIAEKPSLGRAIADVLPkphrkgdgyiecGNGQVVTWCIGHLLEQAQpdiydsryarwnlndlpIVPEKWQlqPKPSVTKQLNVIKRLLGDAEEVIHA 101
                 9****************9******************************8877777777766666555555559999*********************** PP

                 CSSSHHHHHHHHHHHHHHT..HHHTTTEEEEEES CS
      Toprim  70 tDpDreGeaiawellevlk..ellenkigrvefs 101
                  DpDreG+ +  e+l++l+  +  +++++r+ ++
  CTQ27601.1 102 GDPDREGQLLVDEVLDYLQlaPEKRQQVQRCLIN 135
                 *******************655555578887776 PP

>> FYRC  F/Y rich C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00015      0.66      42      80 ..     289     330 ..     274     335 .. 0.78
   2 ?    1.3   0.0     0.089     4e+02      21      39 ..     570     588 ..     566     599 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
        FYRC  42 k..lklfpesisGeemfGLsepaivrlieslpgaekctnY.k 80 
                 +   +l   +i+ ++ fG+s ++++ + ++l + +k+ +Y +
  CTQ27601.1 289 PlpFSLSALQIEAAKRFGFSAQNVLDICQKLYETHKLITYpR 330
                 45545566789999***********************99953 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.089
        FYRC  21 atevWqkvlervqelrkea 39 
                 +t+ W++vl++++e++   
  CTQ27601.1 570 MTAHWESVLTQISEKQCRY 588
                 6889**********77654 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011       0.5      49      86 ..      89     130 ..      74     132 .. 0.75
   2 ?   -2.8   0.0       2.1   9.3e+03      20      45 ..     347     373 ..     344     383 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
    Toprim_4  49 e.aekkvkevilaldgDaeGeataerlae..lll.eegvkvt 86 
                 +  ++ ++evi a+d+D eG+   +++++  +l+ e+ ++v+
  CTQ27601.1  89 KrLLGDAEEVIHAGDPDREGQLLVDEVLDylQLApEKRQQVQ 130
                 3356788*******************9998766655566665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.1
    Toprim_4  20 iknvvavlggalspldgirpeklkt.e 45 
                 + n++av   +l p+  + pe +++ +
  CTQ27601.1 347 VLNAIAVHAADLLPQPVVDPEIRNRcW 373
                 568999999999899999999888855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 4871.11
//
Query:       CTQ27602.1  [L=326]
Description: putative zinc-containing oxydoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-26   90.8   0.4    1.3e-25   89.8   0.4    1.5  1  ADH_zinc_N    Zinc-binding dehydrogenase
    5.6e-24   85.7   0.0    9.7e-24   84.9   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    6.2e-11   42.2   0.3    7.3e-10   38.7   0.4    2.2  2  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.012   15.1   0.1      0.022   14.2   0.1    1.4  1  adh_short     short chain dehydrogenase
       0.17   11.8   0.0       0.48   10.3   0.0    1.7  2  ADH_N_2       N-terminal domain of oxidoreductase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.4   3.7e-29   1.3e-25       1     119 [.     151     272 ..     151     282 .. 0.88

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 3.7e-29
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE..E CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee..f 97 
                 g+G+ avql++alG++v+a+++++ek++ ++ +    +inyk++d+ e+i +lt++egvdv+++ vG g  +++ l llk++Grlv++G+++g     +
  CTQ27602.1 151 GIGTTAVQLCHALGMTVYATVGQDEKIAALRPY--ATAINYKTDDFAEKIGQLTNDEGVDVILDIVG-GPYFNRNLGLLKKDGRLVIIGFMGGRIAheV 246
                 8*************************9999999..589999554***********************.**********************66655568* PP

                 EHHHHHHTT-EEEEE-SSC....HHH CS
  ADH_zinc_N  98 dlrnlllkeksilGsllgs....lre 119
                 d++ l+lk+ +++Gs++ +     ++
  CTQ27602.1 247 DIQTLMLKRATVTGSTMRGrtaaEKQ 272
                 *****************994333333 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.9   0.0   2.7e-27   9.7e-24       6     133 .]     186     322 ..     183     322 .. 0.89

  Alignments for each domain:
  == domain 1  score: 84.9 bits;  conditional E-value: 2.7e-27
                   EEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--..S-EEE-CHHHCTTT-EEEE--GGG...-.....-HHHH.H CS
  ADH_zinc_N_2   6 vidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpp.lsaallkpakkrkgrsvkyeflfsmkas....aqadil.e 91 
                   +i+y+t+df+    + t+ egvDv+ld vgg+++  + l +l++ Grlv ig +   ++ ++  ++++ k+++v+ +++  ++a     + +  l +
    CTQ27602.1 186 AINYKTDDFAekigQLTNDEGVDVILDIVGGPYF-NRNLGLLKKDGRLVIIGfMGGrIAHEVDIQTLMLKRATVTGSTMRGRTAAekqqIAEA-LrR 280
                   79************99999***************.99999**777******9654489999999999999999*9999998777766643333.248 PP

                   HHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  92 elaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   ++  l+e+Gk +p +  ++p++e+aeAh+ l sg++ GK+V+
    CTQ27602.1 281 HVWPLLEAGKCKPLIYASYPMAEIAEAHACLDSGQHLGKVVI 322
                   999**************************************7 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.4     2e-13   7.3e-10       2      73 ..      28      98 ..      27     100 .. 0.88
   2 ?    2.8   0.0     0.029     1e+02      91     108 ..      90     107 ..      86     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 2e-13
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHH CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaC 73
                +evli+vkaag+++ D+   +g   ++     ++G E++G+v++vg +v+ ++ GdrV++  +   g +++C
  CTQ27602.1 28 HEVLIEVKAAGVNRPDILQRQGLYPMPEGVTPVPGLEVAGVVVKVGAQVTAFTPGDRVCA-LTNGGGYAEYC 98
                89********************88888888889*************************98.44455666666 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.029
                 S-SSSBSEEEECGGGEEE CS
       ADH_N  91 ldGgfaeyvvvpekklvk 108
                   Gg+aey+ vp+ + ++
  CTQ27602.1  90 NGGGYAEYCAVPAGQTLP 107
                 57**********988776 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   6.3e-06     0.022       3      40 ..     143     180 ..     141     202 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.3e-06
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleev 40 
                 +lv G++sGIG   ++ + + G++v+++  ++ek++++
  CTQ27602.1 143 ILVHGGASGIGTTAVQLCHALGMTVYATVGQDEKIAAL 180
                 89*************************88888888665 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00013      0.48      16      92 ..      13      89 ..       8     107 .. 0.73
   2 ?   -3.2   0.0       2.1   7.7e+03      45      55 ..     262     272 ..     257     276 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00013
     ADH_N_2 16 sdfeleeeelpelkdGevlvralylSvDPymRgrmndaksyvepvelgdvmrggavgeVv...eSknpdfkvGdlVvgll 92
                + ++++e e+p++++ evl++++  +v    R  + +++  ++  e   ++ g  v+ Vv     +  +f++Gd V++l+
  CTQ27602.1 13 EVLQIREGEIPTIGEHEVLIEVKAAGVN---RPDILQRQGLYPMPEGVTPVPGLEVAGVVvkvGAQVTAFTPGDRVCALT 89
                567899********************96...7777777774443344457778877777622246778999999998875 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.1
     ADH_N_2  45 ymRgrmndaks 55 
                 +mRgr+ ++k+
  CTQ27602.1 262 TMRGRTAAEKQ 272
                 57777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2640.03
//
Query:       CTQ27603.1  [L=447]
Description: glutamate dehydrogenase, NADP-specific [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-87  292.8   2.2    2.8e-87  292.5   2.2    1.1  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
    1.2e-49  167.5   0.0    2.7e-49  166.4   0.0    1.6  1  ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation 
     0.0082   15.5   7.8      0.009   15.3   0.4    2.7  3  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.028   14.9   0.3        3.2    8.3   0.1    2.9  3  XdhC_C           XdhC Rossmann domain
      0.051   14.0   0.1      0.089   13.2   0.1    1.4  1  NAD_binding_7    Putative NAD(P)-binding
      0.076   12.4   0.1       0.14   11.5   0.1    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas


Domain annotation for each model (and alignments):
>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.5   2.2   9.5e-91   2.8e-87       1     243 []     202     445 ..     202     445 .. 0.96

  Alignments for each domain:
  == domain 1  score: 292.5 bits;  conditional E-value: 9.5e-91
                    T--TTTTTHHHHHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE...-HHHHHHHHHCSSS.STTH CS
  ELFV_dehydrog   1 GGsldrpeaTglGvvyyveemlkklkldslegkrvaisGsGnvgsyaallltelgakvvavsDssGviydpeGl...dieellelkeerks.vkey 92 
                    GGsl+rpeaTg+G++y++e+mlk+ +l  +eg+rva+sGsGnv++ya+++++elga+vv+ sDs+G+++d+ G+   +++ l+++ke+  + v++y
     CTQ27603.1 202 GGSLIRPEATGYGLIYFTEAMLKRHGLG-FEGARVAVSGSGNVAQYAIEKAMELGARVVTASDSNGTVVDEAGFtkeKLARLIDIKERAHGrVADY 296
                    9***********************8888.*********************************************666666777778887778**** PP

                    SHHSTSTSEEESHHSHHHHSS-SEEEE-SSTTSB-HHHHTHTHHTT-SEEE-SSSS-B-HHHHHHHHHTT-EEE-HHHHTTHHHHHHHHHHHHHHC CS
  ELFV_dehydrog  93 kkssekkaeyieneeellelkvdilvPcAtqneideenakalikngvklvvEgANlpttqeAkeileeagvlvvpdkaaNaGGVtvSslEmlqnla 188
                    +++   +++y+e++ ++++++vdi++PcAtqne+d + a++li+ngvk+v+EgAN+ptt +A++++ eagvl++p+kaaNaGGV++S+lEm+qn+a
     CTQ27603.1 297 ARE--FGLTYLEGQ-QPWSVPVDIALPCATQNELDVDAARQLIANGVKAVAEGANMPTTIAATDLFLEAGVLFAPGKAANAGGVATSGLEMAQNAA 389
                    *64..468*****7.********************************************************************************* PP

                    T----HHHHHHHHHHHHHHHHHHHHHHHHHCT-T.HHHHHHHHHHHHHHHHHHHCT CS
  ELFV_dehydrog 189 rlswteeevdeklkkimkeifkavveeaeeykqe.lvkganiagfekvaeamkaqG 243
                    r+ w++e+vd++l++im +i++a+v++  e kq+ +v ganiagf kva+am aqG
     CTQ27603.1 390 RMGWKAEKVDARLHHIMLDIHHACVQYGGEAKQTnYVRGANIAGFVKVADAMLAQG 445
                    ****************************9988888*******************99 PP

>> ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   0.0     9e-53   2.7e-49       1     128 [.      57     183 ..      57     185 .. 0.98

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 9e-53
                      -SEEEEEEEEEE-TTSBEEEEEEEEEEEE-TTSSEEEEEEEETT--HHHHHHHHHHHHHHHHHTTSS-EEEEEEEES-GGGS-HHHHHHHHHHH CS
  ELFV_dehydrog_N   1 pervlqvtvpvkrdnGelevikgyraqhssalgPakGGiRfhpsvnldevkaLaalmtyKnalvdlpfGGakggvkidpkklseeeleritrrf 94 
                      perv+q++v + +d+ +++v++++r+q++sa+gP+kGG+Rfhpsvnl+ +k+L++++t+Knal++lp+GG+kgg+++dpk++s+ e++r++++ 
       CTQ27603.1  57 PERVIQFRVVWVDDRNQVQVNRAWRVQFNSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSDGEVMRFCQAL 150
                      89******************************************************************************************** PP

                      HHHHG.GG-BTTTEEEEBBTTB-HHHHHHHHHHH CS
  ELFV_dehydrog_N  95 vrelakkfiGpgiDvpApDvgtgaremawladey 128
                      ++el+ +++Gp++DvpA D+g+g re++++a+ +
       CTQ27603.1 151 MTELY-RHLGPDTDVPAGDIGVGGREVGFMAGMM 183
                      *****.************************9876 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.4     3e-06     0.009      25      73 ..     229     278 ..     220     302 .. 0.78
   2 ?    0.8   0.1     0.086   2.6e+02     119     168 ..     309     356 ..     303     367 .. 0.75
   3 ?    2.7   1.5     0.023        67       1      93 [.     342     439 ..     342     444 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3e-06
                  CB---EEEEESTSHHHHHHHHHHHHTT-E.EEEEESSHHHHHHHHHTTTC CS
  AlaDh_PNT_C  25 gvepakvlviGgGvaGlqAiatakglgak.VtvlDvrparleqleslgak 73 
                  g e a+v v G G + + Ai+ a++lga+ Vt+ D + ++  +    ++k
   CTQ27603.1 229 GFEGARVAVSGSGNVAQYAIEKAMELGARvVTASDSNGTVVDEAGFTKEK 278
                  5678************************7257899998888776665555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.086
                  -TTEEEEETTGGGT-SBTT--TBBTTSEEEEETTEEEEEB.STGGGGSHHH CS
  AlaDh_PNT_C 119 kpgsVivDvAidqGGnvetsrltthgepvveekgvvhygv.anlpgavprt 168
                  +p sV vD+A       e   l   +   +  +gv+ ++  an+p+++++t
   CTQ27603.1 309 QPWSVPVDIALPCATQNE---LDVDAARQLIANGVKAVAEgANMPTTIAAT 356
                  677888888887666666...6666666666799999997589**999876 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.023
                  HHHHHHHHCSCGCTSEEETTCEETCB---EEEEEST.SHHHHHHHHHHHHTT-EEEEEESSHHHHH.HHHH....TTTCECEEHCHHHHHHHHHHHH- CS
  AlaDh_PNT_C   1 AvleaakalekffggkgtlaGgvpgvepakvlviGg.GvaGlqAiatakglgakVtvlDvrparle.qles....lgakfvevlksqeellaeavkea 92 
                  Av e+a++ +        l +gv   +p+k    Gg  + Gl+ +++a+++g k + +D r + +   +++    +g++  ++ +   +++a  vk a
   CTQ27603.1 342 AVAEGANMPTTIAATDLFLEAGVL-FAPGKAANAGGvATSGLEMAQNAARMGWKAEKVDARLHHIMlDIHHacvqYGGEAKQTNYVRGANIAGFVKVA 438
                  566666666666666777777776.667776655431567*******************998654212222234455555555666666666666555 PP

                  S CS
  AlaDh_PNT_C  93 d 93 
                  d
   CTQ27603.1 439 D 439
                  5 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.041   1.2e+02      14      34 ..      55      75 ..      49     112 .. 0.81
   2 ?    8.3   0.1    0.0011       3.2       2      67 ..     236     338 ..     235     349 .. 0.79
   3 ?   -1.0   0.0      0.77   2.3e+03       9      31 ..     380     402 ..     375     426 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.041
                HHHHHHHTEEEEEEES-GGGG CS
      XdhC_C 14 arlaaalgfrvtvvdpreefa 34
                ++  + ++frv++vd+r++++
  CTQ27603.1 55 VEPERVIQFRVVWVDDRNQVQ 75
                55556789*********9865 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0011
                 EEE--STTHHHHHHHHHHHTEEEEEEES-G.GGG-GGG-TT-SE....................................-EEEE--S-HHHHHHHHHH CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpre.efatkerfpeade....................................tavvvlthdhklDaealea 63 
                 ++ G g+vaq  ++ a +lg rv+ + + + ++ +++ f +++                                     ++++ +  + +lD +a ++
  CTQ27603.1 236 AVSGSGNVAQYAIEKAMELGARVVTASDSNgTVVDEAGFTKEKLarlidikerahgrvadyarefgltylegqqpwsvpvDIALPCATQNELDVDAARQ 334
                 799********************9998888566666666644336677777777777888888888888888888999888888888888999998888 PP

                 HSSS CS
      XdhC_C  64 alrk 67 
                 ++++
  CTQ27603.1 335 LIAN 338
                 8854 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.77
                 THHHHHHHHHHHTEEEEEEES-G CS
      XdhC_C   9 vaqalarlaaalgfrvtvvdpre 31 
                  + ++a+ aa++g++   vd+r 
  CTQ27603.1 380 SGLEMAQNAARMGWKAEKVDARL 402
                 67789999999999999999885 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     3e-05     0.089       5      53 ..     230     288 ..     228     357 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3e-05
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapev..........keeleelvklaee 53 
                    ++g +v v G G+vA+  ++k +e ga+v+  +             ke+l +l++++e+
     CTQ27603.1 230 FEGARVAVSGSGNVAQYAIEKAMELGARVVTASDSNgtvvdeagftKEKLARLIDIKER 288
                    7899*************************987776544444433332223344444444 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   4.7e-05      0.14      29      88 ..     225     282 ..     217     286 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.7e-05
                   GSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHH CS
  2-Hacid_dh_C  29 llgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleel 88 
                    +g   +g +v++ G G+++q +++++ ++g++v+  + s+ +   ++e g+++++l  l
    CTQ27603.1 225 RHGLGFEGARVAVSGSGNVAQYAIEKAMELGARVVTASDSNGT--VVDEAGFTKEKLARL 282
                   5677789***************************999998653..357778877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3392.04
//
Query:       CTQ27604.1  [L=136]
Description: pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-18   65.8   0.0    4.6e-18   65.5   0.0    1.1  1  NUDIX     NUDIX domain
    6.8e-12   45.4   0.6    8.2e-12   45.1   0.6    1.1  1  NUDIX_4   NUDIX domain
  ------ inclusion threshold ------
      0.068   12.7   0.0      0.085   12.4   0.0    1.1  1  NUDIX_2   Nucleotide hydrolase


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   7.7e-22   4.6e-18       5     130 ..       6     125 ..       2     126 .. 0.80

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 7.7e-22
                 EEEEEEEETTSEEEEEEES.SSSTTT.EESSEEECBTTS.HHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSGCSSTS CS
       NUDIX   5 avgvvllnekgevLlvrrs.kkpfpg.WelPgGkvepgE.tpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleevegelepnd 100
                  v + +++++g++Ll++r   ++ pg We+ gGkvepgE  p +A++REl+EE G++a+   ++++++ + +     g++ ++  +++  ++g++    
  CTQ27604.1   6 DVVAAIIEQDGQILLAQRPpHADQPGmWEFAGGKVEPGEsQP-QALVRELQEEMGIIARPACYIASHQREVS-----GRRIHLHAWWVPHFQGTPLAH- 97 
                 567779999999*******88888889************888.*************9966667775544333.....334444456668888886665. PP

                 TTTEEEEEEEEHHHHHHHHTHCTHHHHHHH CS
       NUDIX 101 enevsevrwvpleellkeklaaesrkllpw 130
                    + ++rw+ ++e+l+ +la+++ +ll++
  CTQ27604.1  98 --YHTQLRWCLPTEALALDLAPADIPLLHA 125
                 ..8999*********999999999888876 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.6   1.4e-15   8.2e-12       2     105 ..       9     120 ..       7     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 1.4e-15
                 EEEEEECTEEEEEE--TTSSSTT-EE-SEEE.-TTS-HHHHHH...HHHHS-EEE..EEEEEEEEEEETTEEEEEEEEEE.EEE.S..---...EEEEE CS
     NUDIX_4   2 vllirddgrvllekRpekgllggLwefPgge.eegeeleeala...reelgieve..elepgtvkHvftHfrltltvylv.rveegeeapa...elrwv 90 
                 +++i +dg++ll +Rp++    g+wef gg+ e+ge++ +al+   +ee+gi ++  +    + +   + +r++l+ + v +++ g+  ++   +lrw+
  CTQ27604.1   9 AAIIEQDGQILLAQRPPHADQPGMWEFAGGKvEPGESQPQALVrelQEEMGIIARpaCY-IASHQREVSGRRIHLHAWWVpHFQ-GTPLAHyhtQLRWC 105
                 4566666************************999*996678877888999984443322.244457899*******88787776.655655789***** PP

                 EGGGGGGS---CCCH CS
     NUDIX_4  91 tpeeleeyalptavr 105
                  p e  ++ l+ a+ 
  CTQ27604.1 106 LPTEALALDLAPADI 120
                 999998888887765 PP

>> NUDIX_2  Nucleotide hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.4e-05     0.085      68     124 ..      29      95 ..       4     101 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
     NUDIX_2  68 q..efkLpggklksgedeiegLkrkLakklskekev.....eeeievge...llgewwrpnfessly 124
                 q  ++++ ggk+++ge++ ++L r L++ +    +      +++ ev     +l  ww p+f+ + +
  CTQ27604.1  29 QpgMWEFAGGKVEPGESQPQALVRELQEEMGIIARPacyiaSHQREVSGrriHLHAWWVPHFQGTPL 95 
                 24489*************************9554223344433333332222689999999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1049.41
//
Query:       CTQ27605.1  [L=207]
Description: putative phosphatidyl transferase, inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-08   35.8   4.0      1e-08   35.8   4.0    2.4  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   4.0   5.8e-13     1e-08       2      66 .]      27      89 ..      26      89 .. 0.94
   2 ?   -1.1   1.9      0.19   3.5e+03      26      27 ..     136     164 ..      94     191 .. 0.57

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 5.8e-13
                     -HHHHHHHHHHHHHHHHHGGGS-H..HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf  2 lPnaiTllrlllsvlailllltyyplvlailllliasltDalDGklARrlnqvstlGkllDslaD 66
                      P+ +Tl++++++vla+ ++l++ ++ +a++ +l+  l+D+lDG lARr++  ++ G +lD  +D
       CTQ27605.1 27 SPDGLTLVGFAIGVLAL-PFLALGWYGAALAAILLNRLLDGLDGALARRRGL-TDAGGFLDIALD 89
                     699**************.9999999999999999*****************9.9*******8877 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.19
                      ............................. CS
  CDP-OH_P_transf  26 p...........................l 27 
                      +                           +
       CTQ27605.1 136 HqianpgyahkslyylggltegtetillF 164
                      34555555555555555555554444331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1631.35
//
Query:       CTQ27606.1  [L=435]
Description: putative exported thiosulfate sulfur transferase / thiosulfate binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-29  100.0   0.0    3.2e-11   43.7   0.0    3.1  3  Rhodanese  Rhodanese-like domain
     0.0011   19.2   3.0       0.98    9.8   0.0    3.0  3  Ish1       Putative stress-responsive nuclear envelope protei
  ------ inclusion threshold ------
      0.015   15.1   0.0         11    6.0   0.0    2.8  2  GYF_2      GYF domain 2
      0.051   13.3   0.0        3.4    7.5   0.0    2.4  2  SAP        SAP domain
       0.19   11.3   0.0          3    7.5   0.0    2.5  2  LEM        LEM domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00015      0.55       9      98 ..      35     127 ..      28     134 .. 0.74
   2 !   43.7   0.0   8.9e-15   3.2e-11      24     106 ..     180     263 ..     148     264 .. 0.80
   3 !   42.1   0.0   2.7e-14   9.7e-11       3     106 ..     297     418 ..     295     419 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
   Rhodanese   9 lekgkvallDvRppeeY.........ekghIpgAvnvskdtlsrakkseapllelpeellel.gidnkktvvvycdgggraaaaaallkklGyknvsvl 97 
                 l+++  + +D+R ++ Y          +gh p A+n+       a+   a +++++ +++++ +++ ++++ +y++  +   ++aa lk+ G++++s l
  CTQ27606.1  35 LQQQHGVAIDTRLSAYYngwpqrangPEGHEPQALNL------SARWLGAMSDDQLRAWAKQhQLQSDTPIALYGSPEDN-VSVAARLKQTGFTRLSTL 126
                 44444459****98888555555544445********......666666777777777777779999********99999.788888888998888877 PP

   Rhodanese  98 d 98 
                  
  CTQ27606.1 127 S 127
                 5 PP

  == domain 2  score: 43.7 bits;  conditional E-value: 8.9e-15
   Rhodanese  24 eYekghIpgAvnv.skdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGGfkawke 106
                  Y  +hIpgA  +  ++  s++  ++ ++++l + l+++gi++++tv++y+++   a+++a+++ ++G+k+v++ldGG++ w+ 
  CTQ27606.1 180 LYLLSHIPGAGYIdTNEVESEPLWNKVSDAQLKAMLAKHGIRHDTTVILYGRDVYAATRVAQIMLYAGVKDVRLLDGGWQTWSD 263
                 38889********77777777777777777777777777*****************9999**9999**988***********86 PP

  == domain 3  score: 42.1 bits;  conditional E-value: 2.7e-14
   Rhodanese   3 kelkellekgkvallDvRppeeY...........ekghIpgAvnv.......skdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaa 83 
                 ++++ ll+++++ l+ vR+++e+            kg I gA+         + + + +++ ++++ +++ + +++ +i + ++v +yc +g+ra+++ 
  CTQ27606.1 297 EQARGLLHRQDASLVSVRSWPEFigttsgysyikPKGDIAGARWGhagsdstHMEDFHNPDGTMRSADDIATLWRQWNILPSQQVAFYCGTGWRASETF 395
                 6677788999988*********8888888888988899999999999988866666666666666666666666666999**************99999 PP

   Rhodanese  84 allkklGyknvsvldGGfkawke 106
                 + ++++G++ v v+dGG+ +w++
  CTQ27606.1 396 MYARAMGWPHVAVYDGGWYEWSS 418
                 99999**999***********97 PP

>> Ish1  Putative stress-responsive nuclear envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00051       1.8       5      19 ..      80      94 ..      78     100 .. 0.83
   2 !    9.8   0.0   0.00027      0.98       2      19 ..     204     221 ..     203     232 .. 0.86
   3 ?   -2.8   1.2       2.4   8.7e+03       1       6 [.     258     263 ..     258     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00051
        Ish1  5 SdsdLkkWLdshGip 19
                Sd++L++W + h ++
  CTQ27606.1 80 SDDQLRAWAKQHQLQ 94
                9**********9776 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00027
        Ish1   2 dtWSdsdLkkWLdshGip 19 
                 +  Sd +Lk+ L++hGi 
  CTQ27606.1 204 NKVSDAQLKAMLAKHGIR 221
                 6679************96 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.4
        Ish1   1 FdtWSd 6  
                 + tWSd
  CTQ27606.1 258 WQTWSD 263
                 68***9 PP

>> GYF_2  GYF domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.003        11      11      33 ..      77      99 ..      74     101 .. 0.91
   2 ?    5.9   0.0    0.0032        11      13      33 ..     206     226 ..     205     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.003
       GYF_2 11 GPfsleeLkelaasgeitpdtlV 33
                G +s ++L+++a++ ++++dt +
  CTQ27606.1 77 GAMSDDQLRAWAKQHQLQSDTPI 99
                7789****************975 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0032
       GYF_2  13 fsleeLkelaasgeitpdtlV 33 
                 +s ++Lk+++a+  i+ dt V
  CTQ27606.1 206 VSDAQLKAMLAKHGIRHDTTV 226
                 689****************98 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.019        69       2      18 ..      77      93 ..      76      96 .. 0.87
   2 ?    7.5   0.0   0.00096       3.4       2      19 ..     204     221 ..     203     225 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.019
                TT--HHHHHHHHHHTT- CS
         SAP  2 skltVaeLKeeLkkrGL 18
                  ++ ++L++  k++ L
  CTQ27606.1 77 GAMSDDQLRAWAKQHQL 93
                689**********9987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00096
                 TT--HHHHHHHHHHTT-- CS
         SAP   2 skltVaeLKeeLkkrGLp 19 
                 +k + a+LK+ L+k+G++
  CTQ27606.1 204 NKVSDAQLKAMLAKHGIR 221
                 67889***********97 PP

>> LEM  LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.13   4.6e+02       4      12 ..      78      86 ..      76      93 .. 0.84
   2 ?    7.5   0.0   0.00082         3       5      20 ..     206     221 ..     204     222 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.13
         LEM  4 sLsDeeLre 12
                 +sD++Lr+
  CTQ27606.1 78 AMSDDQLRA 86
                69*****97 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00082
         LEM   5 LsDeeLreeLkkyGvs 20 
                  sD++L++ L k+G+ 
  CTQ27606.1 206 VSDAQLKAMLAKHGIR 221
                 59************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3507.07
//
Query:       CTQ27607.1  [L=210]
Description: putative sulfate/thiosulfate transporter subunit: ATP-binding component of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.9e-28   97.7   0.0    9.5e-28   97.4   0.0    1.1  1  ABC_tran     ABC transporter
    1.5e-05   25.0   1.1     0.0025   17.7   0.1    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00061   19.5   0.0      0.001   18.7   0.0    1.3  1  AAA_29       P-loop containing region of AAA domain
     0.0018   18.2   0.0     0.0026   17.7   0.0    1.2  1  RsgA_GTPase  RsgA GTPase
     0.0019   18.6   0.2      0.004   17.5   0.2    1.6  1  AAA_16       AAA ATPase domain
     0.0041   16.7   0.1      0.012   15.2   0.0    1.7  2  AAA_25       AAA domain
  ------ inclusion threshold ------
      0.028   14.9   0.0      0.041   14.4   0.0    1.2  1  AAA_23       AAA domain
      0.031   14.6   0.0       0.09   13.0   0.0    1.8  2  AAA_22       AAA domain
      0.042   13.3   0.0        3.2    7.1   0.0    2.0  2  SMC_N        RecF/RecN/SMC N terminal domain
      0.048   13.8   0.6       0.17   12.0   0.6    2.0  1  AAA_33       AAA domain
      0.075   13.3   0.2       0.56   10.5   0.2    2.2  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
       0.09   12.7   0.0       0.16   11.8   0.0    1.5  1  NACHT        NACHT domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.0   6.4e-31   9.5e-28       1     136 [.      17     161 ..      17     162 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 6.4e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH............HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren............esdee 84 
                 l++v +++ +ge++ ++G++G+GKStL++ ++g l+    + Ge++l+++  ++  l+  +++ig+l+q+p lf++ +v++n            +++  
  CTQ27607.1  17 LREVAFSVAPGEVLTLMGPSGSGKSTLFAWMIGALSGdfrARGELWLNERRCDT--LPTEHRRIGILFQDPLLFDHFSVGQNlqlalpenvrgeARKTA 113
                 67899*****************************9998889*******999999..9999***************************999988777777 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +e+als+ gl +++ +      ++LSgGq+ rv+l rall +p+ lllDEp+
  CTQ27607.1 114 VEEALSRAGLAGFAPRDP----ATLSGGQRARVSLLRALLARPEALLLDEPF 161
                 ************999998....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1    0.0035       5.2       4      16 ..      32      44 ..      29      84 .. 0.88
   2 !   17.7   0.1   1.7e-06    0.0025     231     298 ..     128     193 ..      60     195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0035
      AAA_21  4 liGpNgsGKSnLL 16
                l Gp gsGKS+L+
  CTQ27607.1 32 LMGPSGSGKSTLF 44
                78**********8 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.7e-06
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHS 298
                 +++++ lS G++    ll all+++     ll+DEp + L+ +l + + +++ +el+r  +  il+TH+
  CTQ27607.1 128 PRDPATLSGGQRARVSLLRALLARP---EALLLDEPFSRLDASLRAGFRRWVfEELARQAIPAILVTHD 193
                 4567889999999999999999999...77*********************99999999*********8 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.9e-07     0.001      17      39 ..      22      44 ..      16      56 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.9e-07
      AAA_29 17 ieidlkgatlltGpsGsGKSTll 39
                +++ + ++  l+GpsGsGKSTl+
  CTQ27607.1 22 FSVAPGEVLTLMGPSGSGKSTLF 44
                5667777899************8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.7e-06    0.0026      77     121 ..       4      49 ..       1      59 [. 0.84

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.7e-06
                  SEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  77 yevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallp 121
                  ++ l++s++++  l+e++  ++  ++ +l+G+SG GKStL   +++
   CTQ27607.1   4 VNHLTLSVRRQPLLREVAFSVAPgEVLTLMGPSGSGKSTLFAWMIG 49 
                  566788899999999999999888****************877665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   2.7e-06     0.004      24     127 ..      26     148 ..      13     194 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.7e-06
      AAA_16  24 p.elvllsGesGvGKsslvrellralekd.....ggiflrgkcdqlesaipy......sa.laqalareellrqlldeaesaeleawrekleeala... 106
                 p e++ l G+sG+GKs+l      al++d     + ++ + +cd l+++ ++      ++ l + +   +   ql+ + e+   ea +++ eeal+   
  CTQ27607.1  26 PgEVLTLMGPSGSGKSTLFAWMIGALSGDfrargELWLNERRCDTLPTEHRRigilfqDPlLFDHF-SVGQNLQLALP-ENVRGEARKTAVEEALSrag 122
                 348999************955555888887776447778999999944422223333545344444.33444444444.33344444444444444777 PP

      AAA_16 107 .....avpelagaeasrllellkrll 127
                      + ++++ ++ +r +  l r+l
  CTQ27607.1 123 lagfaPRDPATLSGGQRARVSLLRAL 148
                 77666444444444455555555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     8e-06     0.012      31      65 ..      25      64 ..       8      83 .. 0.78
   2 ?   -1.1   0.0      0.79   1.2e+03      98     139 ..     129     170 ..     104     190 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8e-06
      AAA_25 31 pagelallaGapgtGKttlaldlalava.....tGkpwlg 65
                + ge+  l+G++g+GK+tl   +  a++     +G+ wl 
  CTQ27607.1 25 APGEVLTLMGPSGSGKSTLFAWMIGALSgdfraRGELWLN 64
                569*****************99999888777778888877 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.79
      AAA_25  98 rddarllvldlagveslpLfakdrggtl.ltadvdaleaaiee 139
                 rd+a+l   ++a+v  l+ + + r ++l l++ + +l+a +++
  CTQ27607.1 129 RDPATLSGGQRARVSLLRALLA-RPEALlLDEPFSRLDASLRA 170
                 5555555555555533332222.33333355555666555554 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.7e-05     0.041      24      49 ..      32      57 ..      20      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.7e-05
      AAA_23 24 ItGpNGaGKTTildAiklaLygetpr 49
                + Gp G+GK+T++  +  aL g+++ 
  CTQ27607.1 32 LMGPSGSGKSTLFAWMIGALSGDFRA 57
                57*******************98754 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     6e-05      0.09       7      29 ..      29      51 ..      25      85 .. 0.83
   2 ?   -1.2   0.0       1.5   2.2e+03      94      99 ..     154     159 ..      97     194 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6e-05
      AAA_22  7 ilvvtGesGtGKTtllrrlleql 29
                +l+++G+sG+GK+tl +++   l
  CTQ27607.1 29 VLTLMGPSGSGKSTLFAWMIGAL 51
                789************98876655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.5
      AAA_22  94 lliiDE 99 
                 +l++DE
  CTQ27607.1 154 ALLLDE 159
                 344443 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0022       3.2      26      49 ..      29      49 ..      18      67 .. 0.78
   2 ?    4.4   0.0     0.014        21     118     183 ..     109     176 ..      89     204 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0022
                EEEEEESTTSSHHHHHHHHHHHCT CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAilFvLG 49
                +  ++Gp GSGKs l+    +++G
  CTQ27607.1 29 VLTLMGPSGSGKSTLFA---WMIG 49
                55789*********986...3344 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.014
                 E-HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 118 vtkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaell 183
                 ++k+ v+e l++ag+         +LSgG+++   ++Ll A+ + +p++l llDe  + LD++ ++ + + +
  CTQ27607.1 109 ARKTAVEEALSRAGLAGFaprdpaTLSGGQRAR--VSLLRALLA-RPEAL-LLDEPFSRLDASLRAGFRRWV 176
                 5666666666666664333333339******75..556666654.56665.689999999988777666655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.6   0.00012      0.17       1      23 [.      29      51 ..      29     197 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
      AAA_33  1 lvllvGlpGsGKstlaerllkkl 23
                ++ l G++GsGKstl   ++ +l
  CTQ27607.1 29 VLTLMGPSGSGKSTLFAWMIGAL 51
                56789*********987666555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00037      0.56      62      81 ..     150     169 ..     110     174 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00037
     SbcCD_C  62 palrlvfLDEAFsklDeesi 81 
                  +++ ++LDE Fs+lD+  +
  CTQ27607.1 150 ARPEALLLDEPFSRLDASLR 169
                 35788***********9765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.16       2      25 ..      29      52 ..      28      82 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
                CEEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawa 25
                ++ l G++GsGK+tL ++++ a+ 
  CTQ27607.1 29 VLTLMGPSGSGKSTLFAWMIGALS 52
                67899*************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1588.86
//
Query:       CTQ27608.1  [L=511]
Description: fused putative transporter subunits of ABC superfamily: membrane components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-13   48.7  30.5    4.4e-08   33.1  11.0    2.8  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        3.7    7.3   8.9        2.4    7.9   3.2    2.5  2  MotA_ExbB     MotA/TolQ/ExbB proton channel family


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   9.5   7.4e-09   6.6e-05       2     171 ..      71     253 ..      70     264 .. 0.83
   2 !   33.1  11.0   4.9e-12   4.4e-08      35     155 ..     348     484 ..     296     508 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 7.4e-09
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvf...........vilsilghlilpviillllsaapyvrlirraalr.slpkdlvea 86 
                   i l i+aal ++ ++++l ++l   ll++P+++la   +l+f           ++   +  + +++ ++++l   ++v++++++ l   +  d+  a
    CTQ27608.1  71 IALTIVAALWPSARWRRLASRLPL-LLAVPHLALATAALLLFaeggwlwqqlpFLTPPVDRYGIGLGLTMALKESAFVLWVIYGLLGeKRLADQATA 166
                   56889999************9987.99******99999999999***999997777777799999999999999999999999999835568***** PP

  BPD_transp_1  87 aralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..nggvlalviavlllnlv 171
                    + lG +rwq +r  vlP++lp + + l+ + +++l +  +++ lg +++ ++ +l  ++ ++ +e +   g+++ l+++  l  l+
    CTQ27608.1 167 LKSLGYGRWQCLRWLVLPALLPALGMVLLATTAWSLSAVDVALVLGPGNPPTLAVLAWQWLSQGDELQqaKGALASLLLMASLGGLA 253
                   **********************************************77776666666666666666665545555555555555544 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 4.9e-12
  BPD_transp_1  35 laillvlvf..........vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggl 121
                   ++++lvl +          ++  +l   ++ v+   ll  +p++++i r a r+++  l  +ar+lG++  +if+  +lP++ +p++t l++ f  +
    CTQ27608.1 348 VWLPLVLPAlpladgqyrlALYAWLDGDWWTVLWGHLLWVVPWMLFILRPAWRQRDPRLTVVARTLGWGSTRIFWLLTLPSLTRPLLTALAVGFSVS 444
                   44444444456667777754555566666669999999999******************************************************** PP

  BPD_transp_1 122 lggavlleflgswpGlgtllleailgydyseis..........n 155
                   + +++ +++lg     g+  + ++++  +s++           +
    CTQ27608.1 445 IAQYLPTLWLG----AGRIPTLTSQAVALSSGGeaqtlaaqalW 484
                   ***********....55555555555555544444465555531 PP

>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.3     0.021   1.9e+02      85     113 ..      49      78 ..      45      91 .. 0.82
   2 ?    7.9   3.2   0.00027       2.4      52     109 ..     286     338 ..     283     340 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.021
                 CTHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS
   MotA_ExbB  85 kvapgiaeALiaTalGlvvA.ipavlaynk 113
                 ++++++a  L++T+l +  A ++a+ ++  
  CTQ27608.1  49 QLGQALAATLVSTLLSVGGAlLIALTIVAA 78 
                 688999999999999999998777776655 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSGGCTHHHHHHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB  52 igslaPllGLlGTVlGlieafqaladagsadlakvapgiaeALiaTalGlvvAipavl 109
                 +++l Pl GLlG++l     +  la +  +++++++++++ AL a alG +v ++++ 
  CTQ27608.1 286 LAALLPLSGLLGALL-----LAGLARSAPPQMDALGNSLGLALAACALGAAVCLLWLA 338
                 57888999****985.....88888888789*********************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3709.87
//
Query:       CTQ27609.1  [L=392]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-15   56.6   0.0    5.3e-15   56.0   0.0    1.3  1  SBP_bac_8  Bacterial extracellular solute-binding protein
    4.4e-05   23.6   0.2    0.00044   20.3   0.2    2.0  1  SBP_bac_1  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   5.9e-19   5.3e-15      12     264 ..      67     344 ..      55     357 .. 0.77

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 5.9e-19
                 EEEEEEE-.-SSSHHHHHHHHHHTT..---SEE.EEE-HHHHHHHHHTTSB-..-GGGSTTHHH..-.HHHHHTT--TS.----EEEEEEE-EEEEEHH CS
   SBP_bac_8  12 vkvnvvta.asndleqklkaalaag..tapdidvvwanedalatlaeeglla..dlsdldnldd..l.tdalaavgydgklygvPyasetpyvliynkd 102
                 +++++v++ + +d++  ++++++ag  +++++d++w+n+++++tl++++ll     ++l+n+ +  l +++ +++++  + +  P+ s    ++i +  
  CTQ27609.1  67 IDLRIVPVaDAADAVKRIQTEAQAGrrQGGSVDLLWINGENFRTLKQANLLLtgWAESLPNWRYvdLqKPVREDFSVATEGAESPWGSAQ-LTFIARRG 164
                 778889997889*************555777******************99965334668888733223388888776666999***875.9******* PP

                 HHHHS.---BHHHHHHHHHHHHHH-SEGG---GGGGGGTHHETTEE---H..HHH..............HHHHHHHHHHHHTT....-.EE-S..--SS CS
   SBP_bac_8 103 llekaedpktwdellaaakklkgkfglpdpasgwlqaallakdgksldddggkdgl.............kealellkklkdng....k.tydtgadavs 183
                   ++  +p++ ++lla+a + +g +++p+p+++++ a+l + +   l+d   +++l             +  +++l+ l+++     k ++ + a +  
  CTQ27609.1 165 QTPQ--PPTSPQALLAFARAHPGSVTYPRPPDFTGTALLEQ-LLIALTDQ--PAALrqppqtatfaavtAPLWRYLDALHPALwragKdFPASPARMDT 258
                 ***6..*************************9977666666.44444443..33333333336667778999********8883222245577799999 PP

                 TTTTTSBSEEEE-TTHHHHHH-TTT.....SEEEE--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHH..HH---BS CS
   SBP_bac_8 184 efanGevaftingswdiaaaqkagk.....klgaivpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalae..ktgyipv 264
                 ++ nG+   +++++   a  ++a+       + +++   g++ +++++ +p+na + + +A++ +++l+spe+q   a+   +g ++v
  CTQ27609.1 259 MLNNGTLRLSLTFNPLHARQKAASGelptdSYSFGF-TAGTLGNVHFVTIPANARAVA-GAKVVANFLLSPEAQLRKADaaVWGDPSV 344
                 ***********9887766666664412222333333.669******************.8**************99998666666665 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.2   4.9e-08   0.00044      16     314 ..      59     330 ..      49     331 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4.9e-08
                 HHHHHHHTTEEEEEEEE.CHHHHHHHHHHHHHTTS...SSCSEEEECGGHHHHHHHT.....TSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCEE CS
   SBP_bac_1  16 kafekehpgikVeiesv.gsgslaqkltlaiaaGd...gpaDviavdndwiarlaka.....glllpldpyvkaylapgvkdaadklsssvlpkildsk 105
                 ++  k+++ i+ +i++v +  +    +++  +aG+   g  D+ ++++  +++l++a     g+++ l      +l + v ++++++++          
  CTQ27609.1  59 EE-VKRYYAIDLRIVPVaDAADAVKRIQTEAQAGRrqgGSVDLLWINGENFRTLKQAnllltGWAESLPNWRYVDLQKPVREDFSVATEGAE------- 149
                 44.34578899999999766666668999999999999788999999999999999966666666666665555555555555555554443....... PP

                 EESEEEEE.EEEEEEETTTHHCTTGGG....................SHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEEC CS
   SBP_bac_1 106 vlyvPlya.argliYNkdlfekagldp....................pwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdk 183
                     P+ + +  +i +     +++ +p                     +t   l+e +  +  + ++         +  +++ fa              
  CTQ27609.1 150 ---SPWGSaQLTFIARRGQTPQPPTSPqallafarahpgsvtyprppDFTGTALLEQLLIALTDQPAA------LRQPPQTATFA-------------- 225
                 ...57886355555555555544444344444444444444455533444444444444444444444......55555555555.............. PP

                 CCTHHCSHHHHSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSE CS
   SBP_bac_1 184 dgggldnpegvtaatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpg 282
                             a+t+  + y+ a++ + ++  +   ++ a +++++++G+  + +   + +l a ++a  + +++d+ ++++  g             
  CTQ27609.1 226 ------------AVTAPLWRYLDALHPALWRAGKDFPASPARMDTMLNNGTLRLSLT--FNPLHARQKAASGELPTDSYSFGFTAGTLG---------- 300
                 ............******************************************665..568899999999999999999998777765.......... PP

                 EEEEEEEEEBTTCSTHHHHHHHHHHHTSHHHH CS
   SBP_bac_1 283 ilgayglaipkgsknpeaAkkFldfllspeaq 314
                   ++  ++ip+++   ++Ak + +fllspeaq
  CTQ27609.1 301 --NVHFVTIPANARAVAGAKVVANFLLSPEAQ 330
                 ..8888*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3173.08
//
Query:       CTQ27610.1  [L=186]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-11   44.1   0.9    5.7e-11   42.3   0.0    2.0  2  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   3.2e-15   5.7e-11      14      85 .]      51     122 ..      40     122 .. 0.91
   2 ?    0.1   0.2     0.047   8.5e+02      57      78 ..     127     148 ..     123     169 .. 0.73

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 3.2e-15
                 HCC.GSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHHH CS
         CMD  14 lla.reggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaaee 85 
                 + + r + Ldp +r+L++ +++++ +ce+C+d   + +  ++ +++++ +v++++ ++ +++++r Ala+ae+
  CTQ27610.1  51 I-ErRRSPLDPVLRSLVSARIAQLCHCEFCIDITSMTLAARSGSQDKLLAVADWRSSTLFSEKERLALAYAEA 122
                 3.447788**************************************************************985 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.047
                 HHHHHHHHHHHHHHHSHHHHHH CS
         CMD  57 eeeiaevlaqaaayagwpaara 78 
                 +  ++++l+ a a+++ ++a+ 
  CTQ27610.1 127 PPAVDDALRSAMAAHFDARALT 148
                 5556777888888887777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1412.94
//
Query:       CTQ27611.1  [L=236]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.1e-24   84.2   8.8    9.1e-24   84.2   8.8    2.4  3  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.5    0.0001       1.8      20      84 ..      15      77 ..      11      82 .. 0.76
   2 !   84.2   8.8   5.1e-28   9.1e-24       1     119 [.      80     197 ..      78     198 .. 0.96
   3 ?   -3.8   0.4      0.97   1.7e+04     102     111 ..     207     216 ..     201     223 .. 0.42

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0001
  SNARE_assoc 20 tlvtslgallGaslayllgrylgrkalrrkllsekrvkalerlverygflallllrllpivPrdl 84
                  l+++++a l+a+l++  gr ++++    +l s ++ + +  ++   g  a+l++  l i+   +
   CTQ27611.1 15 ALAVVVAAALAAWLWFPGGRTFLQQ-SLTALASLDPQQ-VRGYIAAWGPQAALVSFALMILQAIV 77
                 68899******************54.555455555544.88888888999999998888884444 PP

  == domain 2  score: 84.2 bits;  conditional E-value: 5.1e-28
  SNARE_assoc   1 lPsevllvaaGvlfglllgtlvtslgallGaslayllgrylgrkalrrkllsekrvkalerlverygflallllrllpivPrdlvnyvaGltrvsfkr 98 
                  lP  ++++a ++lfg ++g  +++  a++Ga l++ ++r lg + +++kl  +  ++ ++ ++ r+g  ++l+ rllp+vP+d v+y+aGlt+++f++
   CTQ27611.1  80 LPAFLITLANAALFGAFWGGALSWFSAMAGAGLCFCIARALG-REVVEKLTGRAVLRSADGYFTRFGPQTILVCRLLPFVPFDPVSYAAGLTSLRFWP 176
                  57788889**********************************.999999999999999**************************************** PP

  SNARE_assoc  99 FflatfiGsipwalvyaylGs 119
                  F+lat +G +p+++vy+ +Gs
   CTQ27611.1 177 FMLATGVGQLPATIVYSWAGS 197
                  *****************9998 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 0.97
  SNARE_assoc 102 atfiGsipwa 111
                  at ++ + ++
   CTQ27611.1 207 ATGLSLLFAL 216
                  3333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1791.28
//
Query:       CTQ27612.1  [L=218]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-25   89.3   6.8    2.5e-25   89.3   6.8    1.8  2  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   6.8   1.4e-29   2.5e-25       1     117 [.      50     166 ..      50     169 .. 0.97
   2 ?   -1.6   0.0       0.2   3.6e+03      24      51 ..     180     201 ..     173     216 .. 0.51

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 1.4e-29
  SNARE_assoc   1 lPsevllvaaGvlfglllgtlvtslgallGaslayllgrylgrkalrrkllsekrvkalerlverygflallllrllpivPrdlvnyvaGltrvsfkr 98 
                  +P+++l++a+G+lfg+l+g l+++++a+l++sl++l++r+lgr+ l+r ++    ++a+er + + g  +l+l rl+p +P+++ ny+ Glt ++f++
   CTQ27612.1  50 IPGSLLVIAGGMLFGPLTGSLLSFAAATLASSLSFLIARWLGRDLLQRYVGHTTVFQAIERGIAHSGCDFLILTRLVPLFPYNIQNYAYGLTAIRFWP 147
                  7*****************************************9999999999999999**************************************** PP

  SNARE_assoc  99 FflatfiGsipwalvyayl 117
                  F+l +++ ++p +++y+++
   CTQ27612.1 148 FTLISAVTTLPGLVIYSVM 166
                  ***************9986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.2
  SNARE_assoc  24 slgallGaslayllgrylgrkalrrkll 51 
                  +l  +l++ l ++l+++        ++ 
   CTQ27612.1 180 ALKLSLAGGLLFALVQIGK------RFA 201
                  4555555556666654333......333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1650.55
//
Query:       CTQ27613.1  [L=268]
Description: exonuclease III [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-23   81.1   0.1    9.7e-23   80.9   0.1    1.1  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
     0.0056   16.5   0.0        0.6   10.0   0.0    2.3  2  Exo_endo_phos_2  Endonuclease-reverse transcriptase


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.1   1.1e-26   9.7e-23       1     233 []       4     259 ..       4     259 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 1.1e-26
                    EEEEESTGCHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCHECSSSTTSSEEEEEECSTEEEEEEEEEEETSS CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   1 ltwNvngqaspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllalggflgasstsptgggggggnggavlsrfpltslfrrtfiefnd 96 
                    +++N+ng         +r  +la++++++++Dv+gLQE++  +  ++++  a+ g++ +      ++g++g++g+a+l + ++ ++ r  +++ + 
     CTQ27613.1   4 VSFNINGL-------RARPHQLAAIVEKHQPDVIGLQETKVHDDMFPLEEVARLGYNVF------YHGQKGHYGVALLTKETPIAVRRGFPDDGEE 86 
                    59*****5.......368999***********************999999998555555......3589**************9997766666666 PP

                    SSGCEEEEEEEEEEEEEEE.........CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH....... CS
                    xxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
  Exo_endo_phos  97 lvaalrreplaakleqlni.........ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap....... 176
                       ++++     +  ++++          + +  + + ++ +++ l+  ++  +++  pv+++GD+N  p+d d    ++++++   +        
     CTQ27613.1  87 AQRRIIMAEIPSPFGNVTVingyfpqgeSRDHETKFPAKAAFYQNLQNYLETELNKENPVLIMGDMNISPTDLDIGIGEENRKRWLRTGkcsflpe 182
                    6666666666666666666*********************************************************99999999888888887777 PP

                    .........H..............SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    .........x..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 177 .........v..............glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalvrrealtlSDH 233
                             +              + +  ++ ++      + g r+D  las  la + ++++++++ + +   +++SDH
     CTQ27613.1 183 erewmdrllGwglvdtwrqanpdnHEHFSWFDYRSKGFDDNRGLRIDLLLASQPLAQRCVETGIDYEIRGM---EKPSDH 259
                    77766666515667777888999*****************************************9998877...8****9 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   6.6e-05       0.6       3      42 ..     105     155 ..     103     161 .. 0.69
   2 !    4.4   0.0    0.0035        32      88     118 ..     226     262 ..     200     263 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 6.6e-05
  Exo_endo_phos_2   3 iisvYippsd.............elenlestlekllselkspkiiilGDfNak 42 
                      +i+ Y p+ +               +nl++ le+ l++ +  +++i+GD+N  
       CTQ27613.1 105 VINGYFPQGEsrdhetkfpakaaFYQNLQNYLETELNKEN--PVLIMGDMNIS 155
                      5566666665666666666444445677777777777777..9********75 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0035
  Exo_endo_phos_2  88 stiDltltsdnlals......kleleeedlgSDHrpi 118
                        iDl l+s++la++        e+   +  SDH p+
       CTQ27613.1 226 LRIDLLLASQPLAQRcvetgiDYEIRGMEKPSDHAPV 262
                      569************8776666666666677888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2068.26
//
Query:       CTQ27614.1  [L=406]
Description: Succinylornithine transaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.9e-124  415.4   0.0   2.3e-124  415.2   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
    4.1e-05   22.9   0.0    5.2e-05   22.6   0.0    1.3  1  Aminotran_1_2  Aminotransferase class I and II
    0.00028   19.9   0.0    0.00049   19.2   0.0    1.3  1  Aminotran_5    Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  415.2   0.0  3.9e-128  2.3e-124      10     405 ..      22     396 ..      14     397 .. 0.98

  Alignments for each domain:
  == domain 1  score: 415.2 bits;  conditional E-value: 3.9e-128
                  CEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHH CS
  Aminotran_3  10 llvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKla 107
                   ++  +++G++l+d++gk+y+D++++iav++lGhahP++v+a+ +qa k++h+  + +tnep+l+la+ l++++    d+vf++nsG+eA+e+AlKla
   CTQ27614.1  22 AFIPVRGAGSRLWDQQGKEYIDFAGGIAVNALGHAHPRLVQALTDQAGKFWHTG-NGYTNEPILRLAKMLIDATFA--DRVFFCNSGAEANEAALKLA 116
                  467789************************************************.*********************..******************** PP

                  HHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETTT CS
  Aminotran_3 108 rkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqgeg 205
                  rkya+ +   ek+ i+af++afHGrtl+++s++g+ + y+++f p++p++ ++ ++d                 le+ ++ ++d+++AvivEp+qgeg
   CTQ27614.1 117 RKYAHDRFGSEKSGIVAFQNAFHGRTLFTVSAGGQ-PAYSRDFAPLPPQIQHAVFND-----------------LESAKALINDQTCAVIVEPVQGEG 196
                  ***********************************.********************9.................77777888**************** PP

                  TSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHHHHHH CS
  Aminotran_3 206 GvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnplacavala 303
                  Gvv+as efl++lr+lc++h++lli+DEvqtG+GrTG+l+A++h+gv+pD++t+aKal+gG+p+ a lat++ ++++++g hg+T+gGnpla ava +
   CTQ27614.1 197 GVVPASVEFLRGLRQLCDQHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKALGGGFPIGALLATEACASVMTVGTHGTTYGGNPLAGAVAGE 294
                  ************************************************************************************************** PP

                  HHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---TT--HHHHHHHHHH CS
  Aminotran_3 304 vleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGdnvirllppliitdeeidellei 401
                   l i+++ ++l  +++  + + e+L++++++y  +ke+Rg+Gl+++  l ++   k k++ + a e+Gv+il aG nv+r++p+l +++ee++ +l++
   CTQ27614.1 295 LLSIVNTPEVLSGVRQRHQWFCERLQAINARYGLFKEIRGLGLLLGCVLNDAWAGKAKTLSNLAAEEGVMILIAGANVVRFAPALNVSEEEVNSGLDR 392
                  ***********************************************999999999999**************************************9 PP

                  HHHH CS
  Aminotran_3 402 lkka 405
                  +++a
   CTQ27614.1 393 VERA 396
                  9986 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   8.7e-09   5.2e-05     126     315 ..     167     344 ..      58     393 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 8.7e-09
                    TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B-.-HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH.HGGSTTSTTEEEEEES CS
  Aminotran_1_2 126 edfhldlealeealkeapegnkktkvilvesphNPtGtva.tleeleklldlakkynlllfvDeaYagfvfgsldavat.ranveeepnllivgsl 219
                        +dle+ ++++++      +t+ ++ve ++   G+v+ + e l+ l +l++++n+ll++De+  g   + +  +a  + +v ++     v + 
     CTQ27614.1 167 HAVFNDLESAKALIND------QTCAVIVEPVQGEGGVVPaSVEFLRGLRQLCDQHNALLIFDEVQTGVGRTGEL-YAYmHYGVTPD-----VLTT 250
                    4567899999999998......89*************99637899********************7777777543.33226666665.....5599 PP

                    SSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..TEEEECCSCSSEEEEEET CS
  Aminotran_1_2 220 sKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael..glkvlasqsgmflltdls 313
                    +Ka+G  G+ +G++l+++a +s ++    +   ++++   +a a+  +ll + ++ e  + + +r++ ++++L+++      +++  g+ ll ++ 
     CTQ27614.1 251 AKALG-GGFPIGALLATEACASVMTVGTHG---TTYGGNPLAGAVAGELLSIVNTPEVLSGVRQRHQWFCERLQAInaRYGLFKEIRGLGLLLGCV 342
                    ****9.5999********999999988877...777777777777777777779999999999999999999999877555566555555555554 PP

                    HH CS
  Aminotran_1_2 314 ae 315
                      
     CTQ27614.1 343 LN 344
                    44 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   8.2e-08   0.00049      53     180 ..      88     228 ..      81     237 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 8.2e-08
                  HHHHT-STGGGEEEESSHHHHHHHHHHHCCCC.....-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBE....GGGHHHH--TTEE CS
  Aminotran_5  53 aelinaeseeeiiftsGtteainlvalslars.....lkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeld....ldelekllnektk 141
                  + li a+ ++++ f+ +++ea++++++ +++       +++  iv  ++  h+ ++  + +  +  +  +++pl ++ +      l+ +++l+n++t+
   CTQ27614.1  88 KMLIDATFADRVFFCNSGAEANEAALKLARKYahdrfGSEKSGIVAFQNAFHGRTLFTVSAGGQPAYSRDFAPLPPQIQHAvfndLESAKALINDQTC 185
                  56899*****************99865443323338667888999*****************9999999998776655443333499*********** PP

                  EEEEESBETTTTE....B--HHHHHHHHHHTT-EEEEE-TTTT CS
  Aminotran_5 142 lvaithvsnvtGt....iqpveeigklakkkgalvlvDaaqav 180
                  +v++  v+ + G+    ++ +  + +l+ +++al++ D +q+ 
   CTQ27614.1 186 AVIVEPVQGEGGVvpasVEFLRGLRQLCDQHNALLIFDEVQTG 228
                  ************94333456778899999************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3210.65
//
Query:       CTQ27615.1  [L=344]
Description: arginine succinyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-144  479.8   0.0   3.2e-144  479.6   0.0    1.0  1  AstA      Arginine N-succinyltransferase beta subunit


Domain annotation for each model (and alignments):
>> AstA  Arginine N-succinyltransferase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  479.6   0.0  1.8e-148  3.2e-144       1     336 [.       1     335 [.       1     336 [. 0.99

  Alignments for each domain:
  == domain 1  score: 479.6 bits;  conditional E-value: 1.8e-148
        AstA   1 MlviRparesDldallelaeesgvgltsLpadeeaLekkiarsersfakeveepgeesYlfvledtetgevvGtsaieaavGleepfysyrvstlvhaS 99 
                 M+viRp+++ Dl++ll+la+e+g gltsLp de++L+++iars++++++e   ++e++Y+fvle++e+g vvG++aie+avGl++p+y+yrv+t+vhaS
  CTQ27615.1   1 MMVIRPVEPGDLPGLLKLAAETGGGLTSLPVDEATLAARIARSQQTWRGE-LPKSEQGYVFVLEESESGAVVGICAIEVAVGLNDPWYNYRVGTQVHAS 98 
                 9************************************************9.99********************************************** PP

        AstA 100 relgvknrievLtlsndltgaselctlfldpeyrkgglgrllsrsRflfiaehrerFaekviaelrGvldedGrspFWealgrhFfsmdFaeadrlsgi 198
                 +el+v++ +++L+lsnd+tg+selctlfldp++rk+g+g lls+sRflf+a++rerF+ekv+ae+rGv+de+G spFWe+lg++Ff+m+F++ad+l+g+
  CTQ27615.1  99 KELNVYQALPTLFLSNDHTGSSELCTLFLDPQWRKEGNGYLLSKSRFLFMAAFRERFNEKVVAEMRGVIDEQGYSPFWESLGKRFFAMEFSRADYLCGT 197
                 *************************************************************************************************** PP

        AstA 199 gskefiaeLmPkypiyvslLseeAqaviGkvhektrpalklLekeGfryegyvDiFDaGPtleaeldeirsvresrrlkvkkeeeeeeegekllvantk 297
                 g+k+fia LmPk+p+y+++Ls+eAqaviGkvh++t+pa+ +LekeGfry +y+DiFD+GPtle+++d++r++r+sr ++ ++ e+ + + + +lvan++
  CTQ27615.1 198 GQKAFIAALMPKHPLYIDFLSPEAQAVIGKVHPQTAPARTVLEKEGFRYLNYIDIFDGGPTLECDIDRVRAIRKSRLVTTEAGETPPGDWPLCLVANEQ 296
                 *********************************************************************************99999999********** PP

        AstA 298 ledFravlaeleleeeelvlsaeaaeaLevsegdkvrvv 336
                 +++Fra+l++++ ++e+l+lsa+++++L++++gd+vr+v
  CTQ27615.1 297 YHQFRALLVHADPDGETLTLSARELDMLKCHAGDQVRMV 335
                 *************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2634.46
//
Query:       CTQ27616.1  [L=492]
Description: succinylglutamic semialdehyde dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.9e-114  381.7   0.0   4.7e-114  381.4   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.026   15.5   1.6      0.028   15.4   0.0    1.9  2  CHRD      CHRD domain


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.4   0.0  5.2e-118  4.7e-114       4     454 ..      12     459 ..       9     465 .. 0.94

  Alignments for each domain:
  == domain 1  score: 381.4 bits;  conditional E-value: 5.2e-118
                 -SSSEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH CS
      Aldedh   4 sesetievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyae 102
                 +++  + + +P++ +v+ + +aa+a +v +avaaA++af++wa+lp++ R++i++k+a+lle+ k el++++ +etGkp +ea++ev+ +i+ +   ++
  CTQ27616.1  12 GRGPGFSKQDPVNLKVVWQGEAADAGQVADAVAAARQAFPSWARLPFAARQAIVEKFAALLEASKAELTAVIGAETGKPRWEAAGEVTAMINKVAISVK 110
                 5554488899***************************************************************************************** PP

                 HHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHH CS
      Aldedh 103 laeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealv 201
                 + +  +ge  +  ++  a+ r++P Gv ++  P+NfP +l+ ++++pal+aGNtvv+KP+e tp s  ++++l+++aglP+gvln+v+g g+e+geal 
  CTQ27616.1 111 AYHVRTGEQHSDLPDGAATLRHRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTVVFKPSELTPRSGEAVVKLWQQAGLPAGVLNLVQG-GRETGEALS 208
                 ****999775555899*************************************************************************.********* PP

                 H-TTESEEEEES-HHHHHHHHHH.HHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHH.HHHHHHHHHHHHHHT-.- CS
      Aldedh 202 ehpevdkvsftGstevgrkiaka.aaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqes.iydefveklveaakkl.k 297
                  + ++d + ftGs+++g +++++ a++  k ++lE+GG+npliv +  D+d+av+ ++++af++aGQ+C++a+rllv ++   d f+++lv   ++l  
  CTQ27616.1 209 GQADIDGLLFTGSSTTGFHLHRQlAGQPQKILALEMGGNNPLIVDDPRDVDAAVHLTIQSAFITAGQRCTCARRLLVRRGeAGDVFLSRLVTVSQRLiP 307
                 ***********************999****************************************************9845666**********9955 PP

                 BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSST.TEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSE CS
      Aldedh 298 vgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekg.yfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdtey 395
                    + +++  +G lise++++kv++   + +++ga  ll+     + l+ g  +++P +++ +++ +++  eE+FGP+l v +++++ee i++aN+t++
  CTQ27616.1 308 AAWDAEPQPFLGGLISEQAAQKVHQAWLQRVAAGAVTLLEP----RLLQAGtSLLTPGIVD-MSNVAKVEDEEVFGPLLGVWRYDTFEEGIALANATRF 401
                 5557899********************************66....445666599******9.8************************************ PP

                 ESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHH CS
      Aldedh 396 GLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegle 454
                 GL+ g+++ + e+  r+  + +aG v++N++ tgaa+++pfgG ++Sg+ r g  +   
  CTQ27616.1 402 GLSCGLISPEREKFDRLLLEARAGIVNWNKPLTGAASTAPFGGTGASGNHRPGAWY-AA 459
                 *************************************************9986644.44 PP

>> CHRD  CHRD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   3.1e-06     0.028       2      67 ..     157     243 ..     156     280 .. 0.77
   2 ?   -4.2   0.3         2   1.8e+04       5      21 ..     433     449 ..     432     450 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.1e-06
        CHRD   2 salLsgaqevp.pavttgasGtavltl.................dddgktlsysvtvsgls....dvtaaHihegaagengpvvvtle 67 
                 +alL+g+++v  p++ t+ sG av++l                  ++g +ls + ++ gl      +t+ H+h  +ag+ + ++ +le
  CTQ27616.1 157 PALLAGNTVVFkPSELTPRSGEAVVKLwqqaglpagvlnlvqggRETGEALSGQADIDGLLftgsSTTGFHLHRQLAGQPQKIL-ALE 243
                 699*******99***************66666666655555555455999999*******8888888888*****988877765.444 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 2
        CHRD   5 LsgaqevppavttgasG 21 
                 L+ga  ++p + tgasG
  CTQ27616.1 433 LTGAASTAPFGGTGASG 449
                 89999888999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3605.54
//
Query:       CTQ27617.1  [L=441]
Description: succinylarginine dihydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-205  682.9   0.0   1.9e-205  682.7   0.0    1.0  1  AstB      Succinylarginine dihydrolase


Domain annotation for each model (and alignments):
>> AstB  Succinylarginine dihydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  682.7   0.0    1e-209  1.9e-205       2     443 .]       3     440 ..       2     440 .. 0.99

  Alignments for each domain:
  == domain 1  score: 682.7 bits;  conditional E-value: 1e-209
                 EEEEEEEE---TT-------TT-HHHHHTTT--B-HHHHHHHHHHHHHHHHHTT--EEEE----SS-HHHHHHTT--SSHHHHHHHHHHH-CHHHHHTS CS
        AstB   2 avevnfDGlvGptHnyaGlslGnvasasnakevsnPraaalqGlekmkaladlglkqgvlpPqeRPdlelLrklgfsgsdeevlekaakeapellaaas 100
                 a evnfDGl G tH+yaGls+Gn as++++ +vsnP+ aa+qGl+kmkalad+g+ q+v+pPqeRP+++lLr+lgfsgsde+v++++a+++p+ll+a+s
  CTQ27617.1   3 AREVNFDGLPGLTHHYAGLSFGNEASTRHRYRVSNPQLAAKQGLKKMKALADAGYPQAVIPPQERPNVPLLRQLGFSGSDEQVVARVAQQEPDLLSAVS 101
                 68************************************************************************************************* PP

                 --GGG-GGGTEEEE-TTTBTTSSEEEEE---TTSHHHHTSHHHHHHHHHHHS--TTTEEEE----SSGGG---GGGGEEEESSSTTS--EEEEEESB-T CS
        AstB 101 sassmwtanaatvspsaDtadgrvHltpanlvtklHRsleaettkrllkaiFadeekFavHealPeeakfgDeGaanHtRlckeygekgvelfvyGrsa 199
                 sas+mw+anaatv psaD+ dg vHlt+anl+ k+HR+ ea+tt++ll+aiF d+++Fa+H+ lP++a fgDeGaanH+Rl+ eyg++gv+lfvyGr+ 
  CTQ27617.1 102 SASAMWVANAATVCPSADSLDGLVHLTVANLQDKFHRASEAPTTEALLQAIFPDRTRFAIHPSLPASAWFGDEGAANHNRLGGEYGAPGVQLFVYGRRR 200
                 **************************************************************************************************9 PP

                 T..---S-SSS--S-BHHHHHHHHHHTTB-GGGEEEEEB-HHHHTTT--SGGGTEEEETTEEEEETTSBTTHHHHHHHHHHHSTT..-EEEEE-TTTS- CS
        AstB 200 leeskvapkkfpaRqtleaseavarlhglkeertvfaqqnpeaidaGvFHnDviavgneevlflHeqafldkeavlaelrekleeaelelievpeeevs 298
                  +  + ap+++paRqtleas+avarl+++++++ +fa+q+p+aid+GvFHnDviav+n++vlf+Heqaf+d++a+l++l ++++   ++ + vp+++vs
  CTQ27617.1 201 GS--EEAPRRYPARQTLEASQAVARLNQVNPRQLIFARQHPAAIDTGVFHNDVIAVSNRQVLFCHEQAFADQTALLQQLAQRVPG--FTPLVVPASRVS 295
                 87..5579*****************************************************************************..9*********** PP

                 HHHHHHHTTTSSEEEE-TTS-EEEEEEHHHHSSHHHHHHHHHHHHSSSSEEEEEEE--HHHHTTT--TTTTEEEEEEEHHHHHHS-GGGB-SHHHHHHH CS
        AstB 299 ledavksYlFnsqlltlpdgemllvvPeecreneavkayleelvasngpikevevvdlrqsmrnGGGPaCLRlrvvlteaelaavnpkvlldeallerl 397
                 +++av++YlFnsql++++dg+m+l++P+e++e++ v++yl+el+a ++pi++++v+dlr+sm+nGGGPaCLRlrvvlt +e +avnp+vl++++l+++l
  CTQ27617.1 296 VAEAVATYLFNSQLVSRADGSMALILPQEAQEHAGVWEYLNELLAGDNPIADLRVFDLRESMANGGGPACLRLRVVLTAEEYQAVNPHVLMNDTLFATL 394
                 *************************************************************************************************** PP

                 HHHHHHH--S-B-GGGGG-HHHHHHHHHHHHHHHHHTT--S-SGGG CS
        AstB 398 eewvekhyrdrlaeedladpqlleesrtaldeLtqilklgsvydfq 443
                 ++wv+++yrdrl+++dladpqll+e r+ald Ltqil+lgsvy+fq
  CTQ27617.1 395 NDWVDRYYRDRLTQADLADPQLLREGRDALDRLTQILQLGSVYPFQ 440
                 *********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3474.14
//
Query:       CTQ27618.1  [L=321]
Description: succinylglutamate desuccinylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-65  221.4   0.0    1.6e-65  221.1   0.0    1.0  1  AstE_AspA      Succinylglutamate desuccinylase / Aspartoacyla
  ------ inclusion threshold ------
       0.16   11.7   0.5       0.86    9.3   0.1    2.0  2  Peptidase_M14  Zinc carboxypeptidase


Domain annotation for each model (and alignments):
>> AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.1   0.0   1.8e-69   1.6e-65       5     288 ..      46     318 ..      43     321 .] 0.97

  Alignments for each domain:
  == domain 1  score: 221.1 bits;  conditional E-value: 1.8e-69
                 EEEEE-SSTT-HHHHHHHHHHHHHHHCCC.ESCCEEEEEESSHHHHHCTSSSSSTT-S-CTTTTTCCCCC.SSTCHHHHHHHHHHHHHHHCHCTCCCGC CS
   AstE_AspA   5 vlisAGvHGnElaGvellrqllkqleead.ilgeitlvplaNppAiaagsRyipidredLNRaFpgrslg.rsldealrateaerladalfaaalpead 101
                 +++s+++HGnE+a+ve+++ql+++l ++  +l++++lv+++NppA++a++Ry++   +d+NR+F +r+++   ++e+ ra+++e+ + ++ +   +  +
  CTQ27618.1  46 LVLSCAIHGNETAPVEIVDQLVQRLVREAlPLRWRLLVIVGNPPALRANKRYLH---SDMNRMFGERWRQfPLSEETQRAQRLEQAVARFYRDH-DGPR 140
                 79***************************9************************...**********************************887.8*** PP

                 EEEEEEEESSTBCCSSEEEE---SSHHHH..HHHHHHTTTSEEEEEESS--SSHHHHHHHHCTSEEEEEEEES.TTTTCCHHCCHHHHHHHHHHHH.CT CS
   AstE_AspA 102 ivlDLHtgtrglkhllfaeadiaeaqlqs..lallkalglpavllldekesagfletaaeelgalaftlElGgagrlgaedisrtakgvlnvlahi.gv 197
                 ++lDLHt++rg+ h++f +++ ++ ++++  l++l  +gl+a++ ++ ++ ++f++++ e+++ala+tlElG+a +lg++d++++a+  +++ +++ g 
  CTQ27618.1 141 WHLDLHTAIRGSLHPRFGVLPARDTPWEEdfLHWLGGAGLEALV-FHRQPGGTFTHFSCERFAALACTLELGKALPLGENDLTQFAAVQRALSRLLvGD 238
                 ***************************99***************.***********************************************9999899 PP

                 CHTT-SCC.CEEEEEEEEEEGGSCCCSSCSEEECCCCSTTTTETCTEEEETTEEEEECTSTEEEEESSSSEEEESCCTSCCTTTTEEEEEE CS
   AstE_AspA 198 vagqeavepaklyrvlreldeprdiraeeaGlvefkvklgddveagellakalvldslggekvelrapqdgvivfineaalvekgaalvkv 288
                 +a  +a+  + +yrv+ +l++++d         +f+++++d++ +++ ++ +++l+++ ge++ +++p++++++f+n++++ + +a+l++ 
  CTQ27618.1 239 LAIADAPA-PLRYRVVQQLTRHSD---------DFRLHMADQTLNFTPFEPGTLLAEE-GETRYVVGPETEYVLFPNPTVAKGLRAGLMLE 318
                 99995455.9**************.........*************************.9999**************************86 PP

>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   9.6e-05      0.86      41      76 ..      38      73 ..      18      76 .. 0.89
   2 ?   -0.1   0.0     0.073   6.5e+02     128     147 ..     100     120 ..      89     149 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 9.6e-05
                   STTST-CEEEEEE-SSTT-HHHHHHHHHHHHHHHHH CS
  Peptidase_M14 41 eaeegkpvvlidggiHarEwigsalllylleqLlsa 76
                    +++ +++ ++++ iH++E+   +++ +l++ L+++
     CTQ27618.1 38 PHARCERGLVLSCAIHGNETAPVEIVDQLVQRLVRE 73
                   57999****************************975 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.073
                    --GGGSSSSSTTSS.SSBSST CS
  Peptidase_M14 128 vDlnRnFpdlwnse.gastsp 147
                     D+nR F + w +   +++++
     CTQ27618.1 100 SDMNRMFGERWRQFpLSEETQ 120
                    69********96553333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2437.42
//
Query:       CTQ27619.1  [L=160]
Description: envelope stress induced periplasmic protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-24   86.0   7.8    4.2e-24   85.3   7.8    1.4  1  LTXXQ         LTXXQ motif family protein
    2.5e-12   47.1   7.7    5.3e-12   46.0   6.6    1.9  2  Metal_resist  Heavy-metal resistance
     0.0024   16.9   1.3     0.0027   16.7   1.3    1.0  1  DUF2362       Uncharacterized conserved protein (DUF2362)
     0.0029   18.1   6.6     0.0039   17.7   6.6    1.3  1  DUF4890       Domain of unknown function (DUF4890)
  ------ inclusion threshold ------
      0.022   14.5   0.5        5.6    6.7   0.2    2.3  2  MlaC          MlaC protein
       0.81    9.7   8.5         23    5.1   1.0    3.2  3  DUF2680       Protein of unknown function (DUF2680)


Domain annotation for each model (and alignments):
>> LTXXQ  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   7.8   1.4e-27   4.2e-24       4     103 ..      45     140 ..      42     141 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 1.4e-27
                 XXXXSTTTT----HHHHHHHHHHHHHHHHHS---..-HHHHHHHHHHHTSSS--HHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH CS
       LTXXQ   4 griaklkaeLkLtdaQkaalkalaeaaraeakplkakkeemramrkkvlaanfdetaperlarmeamlearleavkkraealkqfyavLtpEQkaklda 102
                 g++++++++L+LtdaQk++++++++++r+++k+   + ee+ram++ +++++fd++++e++    +m +++ +++ +r e+++++y++LtpEQk++++a
  CTQ27619.1  45 GQHDMMFKGLNLTDAQKQQIRDIMKSQRENMKRP--SLEERRAMHDLIASDTFDKAKAEAQI--DKMEAQHKAMALSRLETQNKIYNILTPEQKKQFNA 139
                 6889****************************99..**************************..*********************************98 PP

                 H CS
       LTXXQ 103 l 103
                 +
  CTQ27619.1 140 N 140
                 5 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   6.6   1.8e-15   5.3e-12      27     125 ..      38     135 ..       4     136 .. 0.83
   2 !    6.2   0.0    0.0037        11      40      68 ..     126     154 ..     117     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 1.8e-15
                   TTHHBH.......HHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  27 ggparg......raellraalgLpaeqraelraalrdharelralrrelraarrelaallaaepfDaaaieaalaeiraaqaalraqieeallefaa 117
                   +    +      ++++++  l+L+++q ++ r +++ ++   + + r + + rr++++l+a ++fD+a++ea++++++a++ a+   + e   +++ 
    CTQ27619.1  38 M----HhkggpgQHDMMFKGLNLTDAQKQQIRDIMKSQR---ENMKRPSLEERRAMHDLIASDTFDKAKAEAQIDKMEAQHKAMALSRLETQNKIYN 127
                   2....14445678*************************9...77788888*********************************************** PP

                   TT-GGGHH CS
  Metal_resist 118 tlspeqra 125
                   +l+peq+ 
    CTQ27619.1 128 ILTPEQKK 135
                   *****985 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0037
                   HS-TTHHHHHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  40 algLpaeqraelraalrdharelralrre 68 
                   +  L++eq ++++a + +h  e+ a +  
    CTQ27619.1 126 YNILTPEQKKQFNANFEKHLTERNAPAGK 154
                   5669****************999887665 PP

>> DUF2362  Uncharacterized conserved protein (DUF2362)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.3   9.1e-07    0.0027      72     197 ..      22     151 ..       8     158 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9.1e-07
     DUF2362  72 eyaekeeptdeeifaqvyhklvhs..paletllqlehtyakavedlveernkelekleekqteemekai..qeldksltdedvnelaakhfeeqqllkk 166
                 + a+ +++ ++++  ++ hk        + + l+l +  +++++d+++++ +++++ + +++  m++ i  ++ dk   ++++ +++a+h ++     +
  CTQ27619.1  22 HAADTTTAPSDSKPMMMHHKGGPGqhDMMFKGLNLTDAQKQQIRDIMKSQRENMKRPSLEERRAMHDLIasDTFDKAKAEAQIDKMEAQHKAMALSRLE 120
                 55555555555555555555332212455566889999999999999999999998887777777765511566******************9988888 PP

     DUF2362 167 klnseleelketQkkeYrewvmklveelksp 197
                 + n+ ++ l+ +Qkk++ +   k+  e + p
  CTQ27619.1 121 TQNKIYNILTPEQKKQFNANFEKHLTERNAP 151
                 99999999*********99888887776655 PP

>> DUF4890  Domain of unknown function (DUF4890)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   6.6   1.3e-06    0.0039      22     110 .]      48     137 ..      27     139 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-06
     DUF4890  22 ermvkeYsLnetqkkqLlElNlalvekmgdrpmrlkrdakrkkdkrdrkkaq.atkkeerekkrkemkaareaYeaqLkkilTkeqyaay 110
                 + m k  +L + qk+q+ ++ + + e m+    + +r+++      +  ka+ + +  ++e ++k+m  +r + ++++ +ilT eq +++
  CTQ27619.1  48 DMMFKGLNLTDAQKQQIRDIMKSQRENMKRPSLEERRAMHDLIASDTFDKAKaEAQIDKMEAQHKAMALSRLETQNKIYNILTPEQKKQF 137
                 7899***********************986666666665554443343333314455689***********************9997765 PP

>> MlaC  MlaC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0028       8.3     126     155 ..      42      71 ..      36      77 .. 0.83
   2 ?    6.7   0.2    0.0019       5.6      52      72 ..     127     147 ..      90     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0028
                 TEEEEEEEEETTEEHHHHHHHHHHHHHHHH CS
        MlaC 126 gewkiyDviieGvslvatyrsqfasilrqk 155
                 g+    D++++G +l +++++q+++i++++
  CTQ27619.1  42 GGPGQHDMMFKGLNLTDAQKQQIRDIMKSQ 71 
                 555667*********************987 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0019
                 TTS-HHHHHHHHHHHHHHHHH CS
        MlaC  52 rkatpeqrqrfveaFrellvr 72 
                 + +tpeq+++f + F++ l++
  CTQ27619.1 127 NILTPEQKKQFNANFEKHLTE 147
                 568*************99976 PP

>> DUF2680  Protein of unknown function (DUF2680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   1.0    0.0076        23       1      21 [.      56      76 ..      56      77 .. 0.84
   2 ?    3.2   0.4      0.03        91      33      52 ..      95     114 ..      93     117 .. 0.87
   3 ?    4.8   0.0    0.0096        29      33      52 ..     129     148 ..     126     152 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0076
     DUF2680  1 LTdeQkkeleaLyqqiaelrK 21
                LTd Qk+++ ++ +   e +K
  CTQ27619.1 56 LTDAQKQQIRDIMKSQRENMK 76
                8**********9988777665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.03
     DUF2680  33 lTkeqgekikkniDkrlkyl 52 
                 + k ++e+ ++++++++k +
  CTQ27619.1  95 FDKAKAEAQIDKMEAQHKAM 114
                 67999**********99987 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0096
     DUF2680  33 lTkeqgekikkniDkrlkyl 52 
                 lT+eq ++  +n++k+l ++
  CTQ27619.1 129 LTPEQKKQFNANFEKHLTER 148
                 78888888888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1653  (0.092197); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 1350.31
//
Query:       CTQ27620.1  [L=287]
Description: endonuclease of nucleotide excision repair [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   15.0   0.0      0.053   13.8   0.0    1.7  1  GIY-YIG   GIY-YIG catalytic domain


Domain annotation for each model (and alignments):
>> GIY-YIG  GIY-YIG catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.9e-06     0.053       3      74 ..      36     104 ..      34     110 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.9e-06
                 EEEEEE.ETTT--EEEEEESSHHHHHHHHHHHHHHT--S-HS.STEEEEEEEE----HHHHHHHHHHHHHHTT CS
     GIY-YIG   3 gvYiir.skenkliYvGstknlekRlkqHnagkkakytrkkgkkpfeliileifptksealelEkklikkyks 74 
                 gvY++  + +   +Y+G++ nl++R  +H++  +  +      ++ + i ++    +  al lE++lik+ ++
  CTQ27620.1  36 GVYQFHgDSDTMPLYIGKSVNLRSRVLSHLRTPEEAAM----LRQSRRITWQRTAGELGALLLEARLIKEQQP 104
                 78888764455556***************877655555....3456666666666666677777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2368.52
//
Query:       CTQ27621.1  [L=275]
Description: NAD synthetase, NH3/glutamine-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-77  259.1   0.0    3.4e-77  258.8   0.0    1.0  1  NAD_synthase  NAD synthase


Domain annotation for each model (and alignments):
>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.8   0.0   1.9e-81   3.4e-77       2     242 .]      23     265 ..      22     265 .. 0.98

  Alignments for each domain:
  == domain 1  score: 258.8 bits;  conditional E-value: 1.9e-81
                   HHHHHHHHHHHHHHCTT.SEEEEEE-SSHHHHHHHHHHHHHH.........TCGEEEEEE--.SSSTTHHHHHHHHHHHHHHTSEEEE---HHHHHH CS
  NAD_synthase   2 ieelvdflkeyvkkaga.kgvvlGlSGGvDSslvaalavkal.........gkenvlalllP.ssvsseedvedalalaenlgievktidikpivra 87 
                   i+++vdflk+y++++++ k++vlG+SGG+DS+l+++l++ a+          + +++a++lP +++++e+d++da+a++++  ++v t++ik +v a
    CTQ27621.1  23 IRRSVDFLKSYLQTYPFiKSLVLGISGGQDSTLTGKLCQIAInelraetgdSSLQFIAVRLPyGVQADEQDCQDAIAFIQP--DRVLTVNIKAAVLA 117
                   7899*************9*******************************98899***************************..************** PP

                   HHHHHHHHH...-HHHHHHHHHHHHHHHHHHHHHHHTEEEB---BHHHHTTT-S-TTTTT--SBETTTTS-HHHHHHHHHHTT--HHHHCS--B--S CS
  NAD_synthase  88 feqelkeak...edlakgNlkaRiRmailyaianklnllvlgTgnksElvvGyfTkyGDgaadlapiaellKtevkeLakelnvPervlkkpPsAdL 181
                   +eq+l+ea    +d+++gN kaR+Rm+++y+ia++++ +v+gT++++E+++G+fTkyGDg++d++pi +l+K+++k+L+++l++Pe+++kk P+AdL
    CTQ27621.1 118 SEQALREAGielSDFVRGNEKARERMKAQYSIAGMTKGVVVGTDHAAEAITGFFTKYGDGGTDINPIFRLNKRQGKQLLAHLGCPEHLYKKLPTADL 214
                   *******99999************************************************************************************* PP

                   ...STT-BHHHHHSS-HHHHHHHHTHSSSS...HHHHHTTT--HHHHHHHHHHHHHTGGGGSSS CS
  NAD_synthase 182 ...kpgqtDeeeLgikYdelDeiLklvekkkspeeiikekelpaevvekieklvkksehKrklp 242
                      +p+++De +Lg++Y+++D++L+             +k l+ + +++ie ++ k+ehKr++p
    CTQ27621.1 215 eddRPSLPDEVALGVTYENIDDYLE-------------GKTLDPSIAKTIEGWYLKTEHKRRPP 265
                   *999*********************.............89*********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2369.42
//
Query:       CTQ27622.1  [L=112]
Description: DNA-binding transcriptional activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-11   41.3   0.2    1.2e-10   41.0   0.2    1.1  1  SmpA_OmlA  SmpA / OmlA family


Domain annotation for each model (and alignments):
>> SmpA_OmlA  SmpA / OmlA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.2   6.9e-15   1.2e-10       4      69 ..      31      95 ..      29      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 6.9e-15
                TTSHHHHT--TT-BHHHHHHHH-S-SEE.-SSSSS.EEE.EEEEETTE.....EEEEEEEE-TTSBEEE CS
   SmpA_OmlA  4 vtqeqvdqlkpGmtkeqVryllGsPslt.dtfdpn.rwd.YvynfkrggkaveqqvlavyFdddglvrs 69
                 tq+ v+++k+Gm+++qV ++ G+Ps++  +++++ +++ Y++ +++g+      +++v  d++g v +
  CTQ27622.1 31 FTQPVVKDVKKGMSRQQVMQIAGKPSTEvTMVHARgTCQtYILGQRDGK----VETYFVALDETGHVMN 95
                5899*******************************************96....7789999998888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 992.17
//
Query:       CTQ27623.1  [L=106]
Description: N,N'-diacetylchitobiose-specific enzyme IIB component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-16   58.4   0.0    1.1e-15   58.0   0.0    1.2  1  PTS_IIB   PTS system, Lactose/Cellobiose specific IIB subunit


Domain annotation for each model (and alignments):
>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   6.3e-20   1.1e-15       2      89 ..       6      94 ..       5      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 6.3e-20
                EEEEESSSHHHHHHHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEESSGG..CTHHHHTT.SEEEEECTTHHHCCHCHHHHHH CS
     PTS_IIB  2 illaCgaGmatSlmaaeklekaakelgieaegeagveleaeeiaddaDlvllapqvrv..kdlarfag.kpvavinikdalgimdgekvlk 89
                i l C+aGm+tSl++ +k++  a++ ++ +++ea +e+ a e++ +aD+vll+pq+++   +++r    kpv+vi+    +g+ dg  vlk
  CTQ27623.1  6 IYLFCSAGMSTSLLV-SKMRAQAEKYEVPVIIEAYPETLAGEKGPEADVVLLGPQIAYmlPEIQRLLPnKPVEVIDSLL-YGKVDGLGVLK 94
                889************.********************8888888999***********9886666665579******997.99999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 829.37
//
Query:       CTQ27624.1  [L=452]
Description: N,N'-diacetylchitobiose-specific enzyme IIC component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-47  161.7  31.9    2.2e-47  161.7  31.9    1.5  2  PTS_EIIC  Phosphotransferase system, EIIC


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7  31.9   1.2e-51   2.2e-47       2     322 ..      30     363 ..      29     364 .. 0.88
   2 ?   -2.4   0.5       0.1   1.8e+03     202     203 ..     406     407 ..     366     438 .. 0.49

  Alignments for each domain:
  == domain 1  score: 161.7 bits;  conditional E-value: 1.2e-51
    PTS_EIIC   2 dgfmlpiplliagGillglgn..lpnssdlkglss.....lgvqtilsslaeilkqagnavfanLpllfaigiaygl..akggkgvaglagligllafn 91 
                 +gf+  +pl++ag+++++++n  l++ +     s+     +   ++l+++++i  +++n+++++++l++ + i+ +l  ++++++ a  agl++++af+
  CTQ27624.1  30 NGFIKLMPLTLAGAMFVLINNvfLSFGEGSFFYSMgirldASTIETLNGFKAIGGNVYNGTLGIMSLMAPFFIGSALaeERKVDPMA--AGLLAVAAFM 126
                 89********************966655555555577889888999999****************************9989999999..********** PP

    PTS_EIIC  92 llaaisvlllaagalasakasilgiktlstgvfgaiivgllaaylynkfek.nitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqggln 189
                  ++++sv   +a +         + ++++++++ ++i+gl++a+l  ++ + n+ i+LP+s+p  v+ +f+++i+++++l ++g++   + ++ ++   
  CTQ27624.1 127 TVTPYSVGEAYAVG---------ANWLGGQNIISGMIIGLVVAELFTFVIRrNWVIRLPDSVPGSVSRSFSALIPGFLILSIFGIISWALASYGSNFHQ 216
                 *****999766655.........89****************************************************8888876554444444444333 PP

    PTS_EIIC 190 alg.ll...lggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlyg.......agk...eaahiltgefvs..vmfGgpgatlal 272
                  ++  +   l ++g  + ++ + ++++ll++fG+H+ + ++++ ++++ + a +n++ly+       a     +  h+ ++++++  + +Gg+gatl+l
  CTQ27624.1 217 IIMdSIstpLAAMG-SVVGWAYVIFNSLLWFFGVHGSLALTALDNGIMTPWALENIALYNqygsvdaA-IeagKQFHFWAKPMLDsyILLGGSGATLGL 313
                 33353367788888.6799****************************999999999999977777652.146578889999999999************ PP

    PTS_EIIC 273 yiaaflekkskqkkllgsaaltpflfGItepleFgfpfvlnlllfipall 322
                 +ia+f+++++++ +++ ++al +++f I+ep++Fg+p+++n+++fip++l
  CTQ27624.1 314 IIAIFIASRRADHRQVAKLALPSGIFQINEPILFGLPIIMNPVMFIPFVL 363
                 ************************************************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.1
    PTS_EIIC 202 lg 203
                 ++
  CTQ27624.1 406 VA 407
                 11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3567.01
//
Query:       CTQ27625.1  [L=115]
Description: N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-33  112.5   5.8    8.5e-33  112.3   5.8    1.0  1  PTS_IIA   PTS system, Lactose/Cellobiose specific IIA subunit


Domain annotation for each model (and alignments):
>> PTS_IIA  PTS system, Lactose/Cellobiose specific IIA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   5.8   4.8e-37   8.5e-33       1      94 []      19     112 ..      19     112 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 4.8e-37
     PTS_IIA   1 eiameiIlhaGeArslameAlkaakegdfeeaeellkeAeeelkeAhkaqteliqkeasgekvevslllvHAqDhLmtaellkdlakelielyk 94 
                 e++m +I+++G+Arsla+ Alk+ak+gdf +a++++++++++l+eAh++qt+li++++++ k++vsl+lvHAqDhLmt++l+++l+ eliel++
  CTQ27625.1  19 EVVMGLIINSGQARSLAYGALKQAKQGDFAAAKAMMEQSRQALSEAHRVQTQLIESDEGEGKMKVSLVLVHAQDHLMTSMLARELVAELIELHE 112
                 589****************************************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 868.58
//
Query:       CTQ27626.1  [L=274]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-19   69.0   0.1      8e-19   67.7   0.0    1.7  2  HTH_18          Helix-turn-helix domain
    5.6e-18   64.6   2.2    1.7e-10   40.7   0.3    2.7  3  HTH_AraC        Bacterial regulatory helix-turn-helix protein
    6.2e-09   35.4   0.5      1e-08   34.8   0.5    1.3  1  Cupin_2         Cupin domain
    7.4e-06   25.9   0.5    1.4e-05   25.0   0.5    1.4  1  AraC_binding    AraC-like ligand binding domain
     0.0015   18.3   0.0      0.002   17.8   0.0    1.2  1  AraC_binding_2  AraC-binding-like domain
     0.0043   16.9   0.2     0.0078   16.1   0.2    1.4  1  Cupin_7         ChrR Cupin-like domain
     0.0059   16.4   0.0       0.01   15.6   0.0    1.3  1  EutQ            Ethanolamine utilisation protein EutQ
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.022   14.4   0.0    1.5  1  Cupin_3         Protein of unknown function (DUF861)
      0.017   15.6   0.1      0.032   14.6   0.1    1.5  1  JmjC            JmjC domain, hydroxylase
      0.027   14.2   0.0       0.04   13.6   0.0    1.2  1  Cupin_6         Cupin
      0.038   14.4   0.0      0.096   13.1   0.0    1.7  1  Gifsy-2         ATP-binding sugar transporter from pro-phage
      0.051   13.8   0.0       0.15   12.4   0.0    1.9  1  SAM_DrpA        DNA processing protein A sterile alpha motif 
      0.096   11.9   0.0       0.16   11.2   0.0    1.2  1  Lyx_isomer      D-lyxose isomerase
       0.14   11.7   0.0       0.23   10.9   0.0    1.3  1  TRM13           Methyltransferase TRM13


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       5.5     7e+03      36      54 ..     150     167 ..     133     176 .. 0.63
   2 !   67.7   0.0   6.3e-22     8e-19       4      80 ..     193     268 ..     190     269 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.5
                 HHHHHHSSS---HHHHHHH CS
      HTH_18  36 ArrlLlentglsvaeiAla 54 
                 + r L++  + +va++  +
  CTQ27626.1 150 INR-LRHYREEPVADVTPQ 167
                 333.555566777777655 PP

  == domain 2  score: 67.7 bits;  conditional E-value: 6.3e-22
                 HHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   4 algvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                   g ++ +L+r+ +r++g+tp++ ++++R++ A+++L e t+ sv++iA+++G+s++s F++ f+kl+  tPs yr+
  CTQ27626.1 193 LSGKTQEYLTRATQRYYGKTPMQIINDIRINFAKKQL-EITNYSVTDIAYESGYSSPSLFIKTFKKLTSFTPSSYRK 268
                 5677899******************************.88************************************8 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       5.5     7e+03      17      28 ..      88      99 ..      87     100 .. 0.79
   2 !   23.0   0.0     5e-08   6.4e-05      11      42 .]     187     218 ..     177     218 .. 0.91
   3 !   40.7   0.3   1.3e-13   1.7e-10       6      42 .]     231     268 ..     229     268 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5.5
                HTTSSHHHHHHH CS
    HTH_AraC 17 elgfSrsyFsrl 28
                ++g+Sr+ F + 
  CTQ27626.1 88 NVGISRRFFEKH 99
                589999999876 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 5e-08
                 HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  11 iediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 +e++    g  + y++r+ ++++G+tP+q+++
  CTQ27626.1 187 LENMVRLSGKTQEYLTRATQRYYGKTPMQIIN 218
                 6777788899*******************996 PP

  == domain 3  score: 40.7 bits;  conditional E-value: 1.3e-13
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                  tn +++diA e g+ S+s F+++Fkk t  tPs+yr+
  CTQ27626.1 231 ITNYSVTDIAYESGYsSPSLFIKTFKKLTSFTPSSYRK 268
                 689*********************************96 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.5   7.8e-12     1e-08       3      56 ..      23      76 ..      21      85 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 7.8e-12
                EEEETTE.EEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEE CS
     Cupin_2  3 velppGe.sapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHr 56
                v + + e +++ h H++  ef +Vl G+   +++g++v le+Gd+v++p g  H+
  CTQ27626.1 23 VIYNKTEsVSGLHQHDYY-EFTVVLTGRYYQEINGKRVLLERGDFVFIPMGSHHQ 76
                66777787999*******.*********************************997 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.5   1.1e-08   1.4e-05      14      60 ..      30      76 ..      20      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.1e-08
                  -SEEEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EE CS
  AraC_binding 14 hsfpphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHd 60
                   + + h+hd+y++ +v+ G+ + ++ng+++ l+ Gd +++p g  H+
    CTQ27626.1 30 SVSGLHQHDYYEFTVVLTGRYYQEINGKRVLLERGDFVFIPMGSHHQ 76
                  45578************************************999885 PP

>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.6e-06     0.002      53     146 ..      37     131 ..      21     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.6e-06
  AraC_binding_2  53 ddfylvqlplsGraeveqggrevvlgpgdavvldpgr.pyrlrwsadceqlvlripralLerplraplrfaprldldsgagalwrrllrslvael 146
                      d+y + + l Gr   e +g++v l++gd+v++ +g   +++   ++++ l++ i+r+ +e++    l f+++ ++  ++ ++++ ++ s++a l
      CTQ27626.1  37 HDYYEFTVVLTGRYYQEINGKRVLLERGDFVFIPMGShHQSFYEFGATRILNVGISRRFFEKHYLPLLPFGLVASQVYAVQSAFLGYVESVIASL 131
                     68********************************9985677754459***********9999988888888887777777777777777777766 PP

>> Cupin_7  ChrR Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   6.1e-06    0.0078      32      87 ..      27      86 ..       9      90 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.1e-06
                -TTEE---EE-TT-EEEEEEEEEEEET.TEEE...ETTEEEEE-TT-EE--EESS-EEEE CS
     Cupin_7 32 apgsafsahkHpggeeilVLeGvfsde.egdy...paGsylrnppgsshapvseeGctif 87
                +++s+   h+H+  e ++VL G + +e +g+    ++G++++ p gs+h+ + e G+t +
  CTQ27626.1 27 KTESVSGLHQHDYYEFTVVLTGRYYQEiNGKRvllERGDFVFIPMGSHHQSFYEFGATRI 86
                34555568***************9887333323469*****************9998865 PP

>> EutQ  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.8e-06      0.01      94     131 ..      38      75 ..      21      89 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.8e-06
        EutQ  94 nydeidyvieGrldvlidGrkvvaeaGdviliPkgski 131
                 +y e  +v+ Gr    i+G++v  e Gd ++iP gs+ 
  CTQ27626.1  38 DYYEFTVVLTGRYYQEINGKRVLLERGDFVFIPMGSHH 75 
                 899********************************975 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.7e-05     0.022      24      61 ..      38      74 ..      18     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
                SSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTEE CS
     Cupin_3 24 eedEfcyileGevkvtpeggetvelraGDlvvlpkgls 61
                ++ Ef  +l G+   +  +g++v l+ GD+v++p g+ 
  CTQ27626.1 38 DYYEFTVVLTGRYYQEI-NGKRVLLERGDFVFIPMGSH 74
                5589999****876666.*****************994 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   2.5e-05     0.032      74     102 ..      50      78 ..      16      81 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-05
                 HHTT---EEEEE-TT-EEEE-TT-EEEEE CS
        JmjC  74 ekegipvyrfvqkpgefVfvfpgayHsvf 102
                 ++++i  +r+  + g+fVf++ g++H+ f
  CTQ27626.1  50 YYQEINGKRVLLERGDFVFIPMGSHHQSF 78 
                 5677999********************87 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.2e-05      0.04      28      72 ..      34      76 ..      15      90 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.2e-05
     Cupin_6 28 lrfpaglalhvvlrGscwlidpasgepvrLsagdvvllpggephv 72
                l+  +  ++ vvl+G+   +  +  ++v L+ gd v++p g+ h+
  CTQ27626.1 34 LHQHDYYEFTVVLTGRYYQEING--KRVLLERGDFVFIPMGSHHQ 76
                34456699************888..78***************996 PP

>> Gifsy-2  ATP-binding sugar transporter from pro-phage
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.5e-05     0.096      22      67 ..      11      66 ..       4      76 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.5e-05
                EEEEETTEEEEEEEGGGT----....................------EEEEE--SS- CS
     Gifsy-2 22 sewtinGkkykavideapakleGlHede............dtaiegtskkltvfrgsg 67
                ++ + nGk++ +vi ++++ ++GlH+++             ++i  ++k++ + rg++
  CTQ27626.1 11 EQQLFNGKNFHVVIYNKTESVSGLHQHDyyeftvvltgryYQEI--NGKRVLLERGDF 66
                56778********************8887877777775333333..456777777776 PP

>> SAM_DrpA  DNA processing protein A sterile alpha motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00011      0.15      24      58 ..     223     259 ..     210     262 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
    SAM_DrpA  24 dYqekne..ksLsLrdmavvSkcknpalFiekYkqld 58 
                 ++++k+   ++ s+ d+a  S+ + p+lFi ++k+l 
  CTQ27626.1 223 NFAKKQLeiTNYSVTDIAYESGYSSPSLFIKTFKKLT 259
                 5555554224789*********************996 PP

>> Lyx_isomer  D-lyxose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00012      0.16     116     187 ..      17      92 ..      12      95 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
  Lyx_isomer 116 Ggklvielynsdede....klededvtvsvDGvkktvaageklrlkpGesitlepglyHkfwaekgkgkvlvgevs 187
                 G ++ + +yn++e+     + +  ++tv + G+ ++   g+++ l++G+ + +  g +H+ + e g  ++l   +s
  CTQ27626.1  17 GKNFHVVIYNKTESVsglhQHDYYEFTVVLTGRYYQEINGKRVLLERGDFVFIPMGSHHQSFYEFGATRILNVGIS 92 
                 778888999998776222233456799********************************99999999999987776 PP

>> TRM13  Methyltransferase TRM13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00018      0.23     151     238 ..     125     228 ..     113     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00018
       TRM13 151 keyleelgitkeefqiltkmvSWavsgkrkse................aeeedekeekekeekkeeeeseeekksklsseereeiGlkakrlidegRll 233
                 ++++++l+++++ef+ ++++vS++v ++ ++                  e  + k +  +   ++  + + ++++ l+++ ++ +G++  ++i+  R++
  CTQ27626.1 125 ESVIASLNFRETEFDEFIELVSFYVINRLRHYreepvadvtpqwlkntVEAMHDKLKFGEGALENMVRLSGKTQEYLTRATQRYYGKTPMQIINDIRIN 223
                 5667999******************9987555789*******999876333333444555566788888999999***********************9 PP

       TRM13 234 alkek 238
                 + k++
  CTQ27626.1 224 FAKKQ 228
                 99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2154.39
//
Query:       CTQ27627.1  [L=448]
Description: cryptic phospho-beta-glucosidase, NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-75  253.0   0.0    2.1e-75  252.3   0.0    1.4  1  Glyco_hydro_4   Family 4 glycosyl hydrolase
    7.3e-35  120.9   0.0    1.4e-34  120.1   0.0    1.4  2  Glyco_hydro_4C  Family 4 glycosyl hydrolase C-terminal domain
  ------ inclusion threshold ------
      0.022   14.9   0.1      0.073   13.2   0.0    1.8  2  Ldh_1_N         lactate/malate dehydrogenase, NAD binding dom


Domain annotation for each model (and alignments):
>> Glyco_hydro_4  Family 4 glycosyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.3   0.0   3.5e-79   2.1e-75       1     182 [.       6     187 ..       6     188 .. 0.99

  Alignments for each domain:
  == domain 1  score: 252.3 bits;  conditional E-value: 3.5e-79
                    EEEEETTTSSSHHHHHHHHHHTTTTCTEEEEEEE-SSH..HHHHHHHHHHHHHHHHCTTTCEEEEESSHHHHHTT-SEEEE---TTHHHHHHHHHH CS
  Glyco_hydro_4   1 kiviiGgGStifaklllgdlkkteelsvselaLvDide..erldaiqtlakklveeagadlkieattdrkealkdadfVitairvGlekareidek 94 
                    k+v+iGgGS+++++ll+g+lk+++el+vsel+LvD++e  e+ld+i+ l++++ve+ag+++k+++t+dr+ al+ adfV+t++rvG++kare de+
     CTQ27627.1   6 KVVTIGGGSSYTPELLEGFLKRYHELPVSELWLVDVEEgqEKLDIIHALCQRMVEKAGVPMKVYKTLDRRAALQGADFVTTQLRVGQLKAREKDER 101
                    89***********************************999******************************************************** PP

                    CCHTTTTT-CTTSSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHHHHHHHHHC CS
  Glyco_hydro_4  95 iplryGieqtiqdtvgpggifrglrtipvlleIakdieelcPdawvlnytNPaavvteallrlvpnikavglChsvigvkeelakllt 182
                    ipl++G+ +  q+t+g+gg+f+glrtipv+++I+kd++e+cPdaw++n+tNPa++vtea++r++++++++g+C+++ig+k++++++l+
     CTQ27627.1 102 IPLSHGYLG--QETNGAGGLFKGLRTIPVIFDIVKDVQEICPDAWIINFTNPAGMVTEAVYRHTNFKRFIGVCNIPIGMKMFITDVLQ 187
                    *********..*************************************************************************9987 PP

>> Glyco_hydro_4C  Family 4 glycosyl hydrolase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         2   1.2e+04     110     124 ..      42      56 ..      25      64 .. 0.68
   2 !  120.1   0.0   2.3e-38   1.4e-34       2     208 .]     199     415 ..     198     415 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2
                     HTS-SHHHHHHHHHH CS
  Glyco_hydro_4C 110 rsgeyavdiieaivt 124
                     ++g++ +dii+a+++
      CTQ27627.1  42 EEGQEKLDIIHALCQ 56 
                     456677777777765 PP

  == domain 2  score: 120.1 bits;  conditional E-value: 2.3e-38
                     EEETTEEEEEEEECTTEEHHHHHHHHHHH....HHHHHHCTGGGTSHHHHHHHHHHSSEEECGGHHCTTSS.HCHHHH..SHHHHHHH..HHHHH CS
  Glyco_hydro_4C   2 aGlNHlaWllkledkGeDlypelrelvee....dewleeiaekkaervridllrrlgllpteysrhyaEYvpylkrea..peliekek..traev 88 
                     +GlNHl +++++  +G   ++el++ v++     + +++i++    + +  l+r+l l+p++y+ +y     + ++e+   e+ e +k   ra+v
      CTQ27627.1 199 FGLNHLVFVRDVLVNGVSRFDELLDGVASgrltANSVKNIFDL---PFSEGLIRSLRLIPCSYLLYY-----FKPKEMlaIEMGEYYKggARAQV 285
                     7************99*************987776667777776...45558****************.....888777743444434488***** PP

                     HHHHHHTTTTTHHHHHHH.....SSCHTS-S....HHHHHHHHHHTS-EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-.-CS-HHHHH CS
  Glyco_hydro_4C  89 vkevekelfeelekekle.....lekrsgey....avdiieaivtdkprrlvvnvpNnglIpnLpddavVEvpclvdkngirpva.vgelpeqla 173
                     v++vek+lfe +++++l+     le+r+g+y    a+++i+ai++dk+++++vn+p +g ++n+p+d +VE++c  +++g++p++ + +++e++ 
      CTQ27627.1 286 VQKVEKQLFELYKNPDLNvkpkeLEQRGGAYysdaACEVINAIYNDKQTEHYVNIPHHGHVDNIPADWAVEMSCTLGRDGAKPTPrITHFDEKVL 380
                     **************888888889999****9*****************************************************846778***** PP

                     HCHHHHHHHHHHHHHHHHHTBHHHHHHHHHCSTT- CS
  Glyco_hydro_4C 174 allrtniaveeltveAalegdrelalqallldplv 208
                     +l+ t + +e  + +Aa++g+ + +l al l pl+
      CTQ27627.1 381 GLIYTIKGFEVAASQAAISGELNDVLLALNLSPLI 415
                     *********************************96 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.73   4.4e+03      27      53 ..      34      57 ..      28      85 .. 0.47
   2 ?   13.2   0.0   1.2e-05     0.073      96     135 ..     127     166 ..     122     169 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.73
                SEEEEE-SSHHHHHHHHHHHHHCHCCS CS
     Ldh_1_N 27 delaLlDiakekleGvaldlshistfl 53
                +el L+D+++ +   + ld+ h+    
  CTQ27627.1 34 SELWLVDVEEGQ---EKLDIIHALCQR 57
                567777777432...234444443332 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHHTS- CS
     Ldh_1_N  96 kIvkeiveaiakvapnaivlvvsNPvdiltevlkkasglp 135
                  ++ +iv+ +++++p+a ++  +NP+ ++te+++ +++++
  CTQ27627.1 127 PVIFDIVKDVQEICPDAWIINFTNPAGMVTEAVYRHTNFK 166
                 67889*****************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3508.85
//
Query:       CTQ27628.1  [L=252]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-58  197.4   0.1    3.7e-58  197.3   0.1    1.0  1  YdjC      YdjC-like protein


Domain annotation for each model (and alignments):
>> YdjC  YdjC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.3   0.1   2.1e-62   3.7e-58       2     232 ..       5     240 ..       4     241 .. 0.81

  Alignments for each domain:
  == domain 1  score: 197.3 bits;  conditional E-value: 2.1e-62
                 EEEEEEEETSSHHHHHHHHHHHHSSS--EEEE-TTSTTHHHHHHHHHH-TT-..EEEE-S-----SS-TTTSGGGB-TTS-B......CCCH...--HH CS
        YdjC   2 LiinADDfGlspgvnagiielleegiltstslmvngpaaeeaaelakeapal..GlHlnltegkplsppeevpsLvdedGrfas....lrll...asle 91 
                 Li+nADDfGls+g n+giie++++g++tst+++vng+a+++aa+l++++p+l  G+H++lt g+pl   +++p L++ dGr+ +    +  +   + le
  CTQ27628.1   5 LIVNADDFGLSKGQNYGIIEACRNGVVTSTTALVNGAAIDHAAQLSRSTPELavGMHFVLTLGEPL---SAMPGLTR-DGRLGKwiwqQ-AEedsLPLE 98 
                 9**************************************************555*********776...589****9.****7776532.22456777* PP

                 HHHHHHHHHHHHHGGG.SS--S-EEEGGGGGGSSHHHHHHHHHHHHHT--S---.............................EE---S.GGG-SHHHH CS
        YdjC  92 everEieaQierfrelfglkpdHlDgHqhvhvlpevleallelakeygipvrlpaelialga.krkleeanakfykkagirstfiglseeggemteesl 189
                 e+++E++ Q++rf+elfg++p+H+D+H+hvh++ +++++++++a+e gi++r+ +++ a ++ +++++++      +ag++s f+     g++++ee +
  CTQ27628.1  99 EIAHELACQYRRFVELFGHEPTHIDSHHHVHMFAQIYPIVAAFAREKGIALRIDRQVAAQSElDQQAARS------SAGFSSEFY-----GEAVSEELF 186
                 *****************************************************86655333333444333......233333344.....555566666 PP

                 HHHHHHHH.SS-...EEEEE----B-.HH..........HHHHHHHHC-HHHHHHHH CS
        YdjC 190 lklleklk.pgg...telmcHPgyqdqek..........rekElealtspelkealk 232
                 l+ l++   + g    e+mcHP+y+d  +          r  El++lts +lk+a++
  CTQ27628.1 187 LQTLDASIaR-GersLEVMCHPAYVD--RiimgsaycypRLDELDVLTSASLKAAVA 240
                 6655544322.2245*********75..33577778888**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2027.92
//
Query:       CTQ27629.1  [L=752]
Description: hydroperoxidase HPII(III) (catalase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.2e-179  594.8   0.0   9.5e-179  594.4   0.0    1.1  1  Catalase      Catalase
    8.1e-18   64.4   0.0    1.7e-17   63.3   0.0    1.6  1  Catalase-rel  Catalase-related immune-responsive
    4.7e-15   55.5   0.0    7.1e-15   54.9   0.0    1.3  1  Catalase_C    C-terminal domain found in long catalases
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.025   14.4   0.0    1.4  1  DJ-1_PfpI     DJ-1/PfpI family


Domain annotation for each model (and alignments):
>> Catalase  Catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  594.4   0.0  2.1e-182  9.5e-179       1     382 [.      80     465 ..      80     466 .. 0.98

  Alignments for each domain:
  == domain 1  score: 594.4 bits;  conditional E-value: 2.1e-182
                 B-TTS-B-S-SSS-EEESTTS-BBTT-HHHHHHHHHHHT------SS--SEEEEEEEEEESS--TTT---GGGSSTT-EEEEEEEEE-SS--TT--SSS CS
    Catalase   1 ttseGapvsdnqnsltagerGplllqdvhlieklahfdreripeRvvhAkGagahgeFevtkdisdltkakllskvgkktpvlvRfStvagekgsadta 99 
                 tt++G++++d+qnsl+ag+rGp+ll+d++l+ek++hfd+eripeR+vhA+G++ahg+F+ +k++  ltka++ls+++k tpv+vRfStv+g +gsadt+
  CTQ27629.1  80 TTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLAALTKADFLSSADKITPVFVRFSTVQGGAGSADTV 178
                 89************************************************************************************************* PP

                 SS--EEEEEEEETTEEEEEEEESSSS-S-S-GGGHHHHHHHHSB-TTT-SB..-HHH..HHHHHHT-GGGHHHHHHHHSGGGSBS-GGGS-EE--S-EE CS
    Catalase 100 RdvrGfavkfyTeeGnwDlvgnntpvFfirDpikfpdlihsqkrepqtnlk..daam..fwdflslnpeslhqvlilfsdrgipksyrhmngygvhtfk 194
                 Rd+rGfa+kfyT+eG++DlvgnntpvFfi+D++kfpd++h++k+ep+  ++  ++a+  fwd++sl+pe+lh+v++++sdrgip+syr+m+g+g+htf+
  CTQ27629.1 179 RDIRGFATKFYTDEGIFDLVGNNTPVFFIQDAMKFPDFVHAVKPEPHWAIPqgQSAHdtFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFR 277
                 **************************************************988555566**************************************** PP

                 EE-TT--EEEEEEEEEETT---B--HHHHHHHHHH-TTHHHHHHHHHHHTT---EEEEEEEEEEHHHHTTTHHHHT-TT----TTTS--EEEEEEEEEE CS
    Catalase 195 lvnkegevvyvkfhfktkqgvknltaeeaeklagedpdyatrdLyeaiekgeypewelyvqvmteeeaeklrfnilDlTkvwpekevplrevGkltLnr 293
                 l+n+eg++++v+fh+k+  g ++l+++ea+kl+g+dpd+++rdL+eaie+g+ype+el +q+++ee++  ++f++lD+Tk++pe+ vp+++vG+++Lnr
  CTQ27629.1 278 LINAEGKATFVRFHWKPVAGKASLVWDEAQKLTGRDPDFHRRDLWEAIEAGDYPEFELGLQLIPEENEFAFDFDLLDPTKLIPEALVPVQRVGRMVLNR 376
                 *************************************************************************************************** PP

                 --S-HHHHTTT----TT---TTEE--S-HHHHHHHHHHHHHHHHHT.-TTGGGSGGG---..---S----TT-.....S-S---SS-S-T CS
    Catalase 294 npenyFaevEqvafspsnlvpGiepseDklLqgRlfsYadtqryRl.GvnyqqlpvNrpkakvanyqrdGamrveankgkepnYepnsle 382
                 np+n+Fae Eq+af+p+++vpGi++s+D+lLqgRlfsY+dtq++Rl G+n++++p+Nrp+++++n+qrdG++r++++++  +nYepns++
  CTQ27629.1 377 NPDNFFAENEQAAFHPGHIVPGIDFSNDPLLQGRLFSYTDTQISRLgGPNFHEIPINRPTCPYHNFQRDGMHRMDIDTNP-ANYEPNSIN 465
                 **********************************************99**************************999988.******976 PP

>> Catalase-rel  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   3.9e-21   1.7e-17       2      65 .]     498     561 ..     497     561 .. 0.96

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 3.9e-21
                   HGG--SSHHHHHHHHHS-HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-HHHHHHHHHHH CS
  Catalase-rel   2 edfddhfsQagllyrsmseeekerlvnniafelskvedeeiqerqlehfakvDpdlgqrVaeal 65 
                    +f +++ Q++l++ s+++ e++++++ ++felskv +  i+er+++h+a++D  l+++V ++l
    CTQ27629.1 498 PSFGEYYAQPRLFWLSQTPIEQQHIIDGFSFELSKVVRTWIRERVVDHLAHIDTKLAEAVGANL 561
                   57889*******************************************************9876 PP

>> Catalase_C  C-terminal domain found in long catalases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   1.6e-18   7.1e-15       1     152 []     598     745 ..     598     745 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 1.6e-18
  Catalase_C   1 dglkVgiLasndseaslaqakalaaalaaegvdvtvvaeklg...saeg....vnrTYstadaveFDaivvadgaeslfsakataasslfpagrplqll 92 
                 +g+ V++L +  + +s +++ +l +al+a+gv  +++ +++g    ++g    +  T++ + +   Da+vv +g            s+l ++g++   l
  CTQ27629.1 598 KGRVVAVLLN--ERTSAQDLVQLLQALQAQGVHSKLLYSRMGeviADDGsplpIAGTFAGSPSLTVDAVVVPGGDL----------SALSQSGDARYYL 684
                 6999*****7..5569*******************998777777655555677*********************33..........45678999***** PP

  Catalase_C  93 ldayrhgKpigalGsgaealkaagisa.eepGVyvadsasealvekvkegLatfrfldRfp 152
                 l+ay+h Kpi   G+++++ + +++++  e+GV v+d  ++  ++k+ ++++ +r+++R p
  CTQ27629.1 685 LEAYKHLKPILLAGDARQLTSVLHVPTqGEEGVIVTDALDTPAADKLLALMTAHRVWSRSP 745
                 ************************9987899****************************76 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   5.5e-06     0.025       3      97 ..     602     694 ..     600     708 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.5e-06
                 EEEEEETTBEHHHHHHHHHHHHHTTEEEEEEESSTSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EE CS
   DJ-1_PfpI   3 vlvlladgvedvElivpvdvlkragikvdvvsvdkeevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekgklv 97 
                 v+vll + ++  +l+ ++++l+++g++ ++ +   +ev   +G  +++  ++    + + Da+v+pGG+     l+++  ++  + e+++  k++
  CTQ27629.1 602 VAVLLNERTSAQDLVQLLQALQAQGVHSKLLYSRMGEVIADDGSPLPIAGTFAGSPSLTVDAVVVPGGDL--SALSQSGDARYYLLEAYKHLKPI 694
                 89999************************************************76666**********99..66666666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 5853.56
//
Query:       CTQ27630.1  [L=110]
Description: Cell division activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-52  175.6   1.6    1.5e-52  175.4   1.6    1.1  1  CedA      Cell division activator CedA


Domain annotation for each model (and alignments):
>> CedA  Cell division activator CedA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.4   1.6   8.2e-57   1.5e-52       1      77 []      32     108 ..      32     108 .. 0.99

  Alignments for each domain:
  == domain 1  score: 175.4 bits;  conditional E-value: 8.2e-57
        CedA   1 mkplrqqnrpvisyvprvepappehavkmeeyrdvwvlknkyvafllvgerfrrspafdvpeaaqrwadqvrqeeei 77 
                 mkplrqqnrpvisyvprvepappehavkm+++rdvw+l++kyvafll+ge+frrspaf+vpe+aqrwa+qvrqe+ei
  CTQ27630.1  32 MKPLRQQNRPVISYVPRVEPAPPEHAVKMDHFRDVWILRGKYVAFLLMGEHFRRSPAFSVPESAQRWANQVRQEGEI 108
                 9**************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 922.43
//
Query:       CTQ27631.1  [L=463]
Description: putative transport protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.6e-103  344.5  34.8   9.1e-103  344.3  34.8    1.1  1  SDF       Sodium:dicarboxylate symporter family
  ------ inclusion threshold ------
      0.043   14.0   1.0        0.2   11.9   0.5    2.4  2  Pox_A14   Poxvirus virion envelope protein A14


Domain annotation for each model (and alignments):
>> SDF  Sodium:dicarboxylate symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.3  34.8    1e-106  9.1e-103       3     390 .]      31     443 ..      29     443 .. 0.96

  Alignments for each domain:
  == domain 1  score: 344.3 bits;  conditional E-value: 1e-106
         SDF   3 lqiliglvlGlviGll.........elvkelaalisplgdlfinllkmlivPlvfasiisgiaslgdakklgklglktllyfllttliAaiiglilall 92 
                  ++l+gl+ G+v+Gl+         +++k+++++++++g+++++ll+m+++Plvfasi s++a+l++a++lgk+++  ++ +l+ttliAa++g+++ ++
  CTQ27631.1  31 RKVLVGLATGVVFGLAlqliygsdsQVLKDSIQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLGKISFLSIGTLLFTTLIAALVGVLVTNM 129
                 689***********99********99************************************************************************* PP

         SDF  93 lkpg.........selaleassakeaekketdslldlilslipsnifeala...egnvlavivfailfGialaalgekg....epllkffeslnevvmk 175
                 + +          ++++l a +++   k +  s+++lils++p+n+f++l+    ++++++++f+ ++G+a+ +l ++     +++l+ +++l+  vmk
  CTQ27631.1 130 FGLTaeglvqgsaETARLNAIQSNYVGKVADLSVPQLILSFVPKNPFADLTganPTSIISIVIFSAFLGVAALKLLKEDvekgQRVLTAIDTLQGWVMK 228
                 *********9998888888899999999999*******************9766779**************999988667777**************** PP

         SDF 176 vvkivmklaPigvfaliaslvaskglgalsslakflltvylglaihllivlpllllvltkknplkflkkilpalltAfsTaSSaAtLPvtlecaeknlg 274
                 +v++vm+l+P+gv+al++++va ++l+ +++l+ f+++ y++l i  ++v++ lll++++++plk+++k++p++ +Af+++SSaA++P+++e+++++lg
  CTQ27631.1 229 LVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGGFVVASYIALGI--MFVVHGLLLAINGVSPLKYFRKVWPVITFAFTSRSSAASIPLNVEAQTRRLG 325
                 *********************************************..45555555669***************************************** PP

         SDF 275 vsesiasfvlPlGatinmdGt.alyeavaaifiaqlfgve.lslgqllllvlvatlasiGaagvPgaglvalllvlsalglpvegialilaidrllDmf 371
                 v+esiasf +++Gati+++G+ ++y+a++a+++a ++g++ l+ + +++lv + t++s G+agv g++++a+l+vl a+glpv+ +al++++++l+Dm+
  CTQ27631.1 326 VPESIASFSASFGATIGQNGCaGIYPAMLAVMVAPTVGINpLDPMWIATLVGIVTVSSAGVAGVGGGATFAALIVLPAMGLPVTLVALLISVEPLIDMG 424
                 ****************************************9********************************************************** PP

         SDF 372 rTavNvtGdavaalivakl 390
                 rTa+Nv+G+++a ++++++
  CTQ27631.1 425 RTALNVNGSMTAGTLTSQW 443
                 *************999876 PP

>> Pox_A14  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   2.2e-05       0.2       4      87 ..      65     149 ..      62     154 .. 0.86
   2 ?   -2.4   0.0      0.63   5.7e+03      59      69 ..     187     197 ..     185     215 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.2e-05
     Pox_A14   4 lellknyystvliaGiiLLilacifafvdfskstst.tdkawralsivsFilgivillglllfsmygrkCkatsskvveearyns 87 
                 ++++ n y ++l + ++ L+ a i+  v   ++ s+  +  + ++  + F + i++l+g+l+ +m+g   +  ++++ e+ar+n 
  CTQ27631.1  65 FNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQlGKISFLSIGTLLFTTLIAALVGVLVTNMFGLTAEGLVQGSAETARLNA 149
                 678889999999998888888888877777777777688999999***********************99999**********97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.63
     Pox_A14  59 llglllfsmyg 69 
                 ++++++fs++ 
  CTQ27631.1 187 IISIVIFSAFL 197
                 78889998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3565.37
//
Query:       CTQ27632.1  [L=196]
Description: conserved hypothetical protein; putative inner membrane protein regulated by LexA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-33  115.3   5.9    2.2e-33  115.0   5.9    1.1  1  YdjM      LexA-binding, inner membrane-associated putative hy
  ------ inclusion threshold ------
      0.011   15.6   2.5       0.76    9.6   0.6    2.4  2  DUF2227   Uncharacterized metal-binding protein (DUF2227)


Domain annotation for each model (and alignments):
>> YdjM  LexA-binding, inner membrane-associated putative hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   5.9   2.4e-37   2.2e-33       1     167 [.       1     161 [.       1     171 [. 0.84

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 2.4e-37
        YdjM   1 MdgltHallGaalglalaallgaake.....avllavavlgAllPDiDhpsstlgrklgllskklaklvgHRgftHSllflallalvlllllrlfgrsa 94 
                 M+   H+ +++a+++ + +   ++       ++++  avl+ llPDiDhp+s+lg++l ++sk +a+ +gHRgftHSll+++++ ++++l +   +   
  CTQ27632.1   1 MTAEGHLFFSIACAVFAKNAELTPVLaqgdwWHIVPSAVLTCLLPDIDHPKSFLGQRLSWISKPVARAFGHRGFTHSLLAVFGALTLFYLKVPDSWIVP 99 
                 89999*****9999999888777666899999************************************************************9999986 PP

        YdjM  95 lrlglllllgvlsHlllDlltkyGvpllwPfskkkvrlsllfiiidplltllsrrglvalelvllvlylviil 167
                 + +  +l+lg+lsH+l+D+lt++GvpllwP + +++rl++l  ++ +         ++ + +++++l++ +++
  CTQ27632.1 100 ADALQGLVLGYLSHILADMLTPAGVPLLWPCR-WRFRLPILAPRKGN---------QL-ERALCMALFVYAVW 161
                 666667*************************4.66676666664443.........44.55555555544444 PP

>> DUF2227  Uncharacterized metal-binding protein (DUF2227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.6   8.5e-05      0.76      60      95 ..      56      91 ..       8      98 .. 0.76
   2 ?    5.6   0.1    0.0014        13     145     164 ..     102     121 ..      93     125 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 8.5e-05
     DUF2227 60 gilrwlWlPYqkllrHRsllSHgli.vGtllRllYll 95
                  l w+  P  + + HR+ ++H+l+ v  +l l+Yl 
  CTQ27632.1 56 QRLSWISKPVARAFGHRG-FTHSLLaVFGALTLFYLK 91
                4589999***********.***987333456677775 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0014
     DUF2227 145 lllGlelgamlHllsDwvvs 164
                 +l Gl+lg ++H+l+D++ +
  CTQ27632.1 102 ALQGLVLGYLSHILADMLTP 121
                 578*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1445.10
//
Query:       CTQ27633.1  [L=253]
Description: 2-deoxy-D-gluconate 3-dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-56  192.1   0.2    1.3e-56  191.8   0.2    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    2.3e-56  190.4   0.4      3e-56  190.0   0.4    1.2  1  adh_short     short chain dehydrogenase
    2.3e-08   34.2   0.6    3.2e-08   33.7   0.6    1.2  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.8   0.2   2.1e-60   1.3e-56       4     233 ..      20     250 ..      16     251 .. 0.94

  Alignments for each domain:
  == domain 1  score: 191.8 bits;  conditional E-value: 2.1e-60
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae..vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdra 98 
                    g+G+++   la++G+++v  +++   + +++++ + lg++  ++++D ++e+++  lv+++v+ +g++Dilvnnagi ++   ++l+++++++d +
    CTQ27633.1  20 TGLGQGMTLGLAQAGCDIVGINRKIPHD-TAAQVLA-LGRRfhAIQADLSQENDMSGLVDQAVAAMGRVDILVNNAGIIRR--HDALTFTESDWDAV 112
                   79*****************999999984.4444444.5655236*************************************..************** PP

                   HHHHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHH CS
  adh_short_C2  99 ldvnlyslfllakaalp.lmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleel 192
                   +d nl+++f l++a+++  +++g  g+i+n++s+ + ++      y+a+K ++ +ltr lA+e++ +gi vNa++pg+++T+ ++++++ +e  +++
    CTQ27633.1 113 IDLNLKAVFFLSQAVARqFIRQGegGKIINIASMLSFQGGIRVPSYTASKSGVLGLTRLLANEWAGQGINVNAIAPGYMATNNTQALREDEERNQAI 209
                   *****************86666577************************************************************************ PP

                   HHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 193 earaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                    +r+p gr+g p++    ++fLas +a yi+G tl+vDgG+
    CTQ27633.1 210 LERIPAGRWGAPKDLQGPVVFLASSAADYINGYTLAVDGGW 250
                   ****************************************6 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.0   0.4   5.1e-60     3e-56       1     194 [.      11     203 ..      11     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 190.0 bits;  conditional E-value: 5.1e-60
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 kv++vtG++ G+G+ +   la++G+++v ++r+    + +a+++ ++g++++aiq+D++++++++ lv++av+ +g++d+LvnNAGi +++++  ++e+
  CTQ27633.1  11 KVAIVTGCDTGLGQGMTLGLAQAGCDIVGINRK--IPHDTAAQVLALGRRFHAIQADLSQENDMSGLVDQAVAAMGRVDILVNNAGIIRRHDALTFTES 107
                 89*************************887666..56789999999***************************************************** PP

                 HHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTHH CS
   adh_short 100 ewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelreke 194
                 +w++vi++Nl++vf l++av+++++ ++++G+I+n++S+ ++++ + v++Y+AsK +v gltr la+e+a +gi+vna+aPG+++T+ +++lre+e
  CTQ27633.1 108 DWDAVIDLNLKAVFFLSQAVARQFIrQGEGGKIINIASMLSFQGGIRVPSYTASKSGVLGLTRLLANEWAGQGINVNAIAPGYMATNNTQALREDE 203
                 ************************988999**************************************************************9987 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.6   5.4e-12   3.2e-08       4     153 ..      14     162 ..      12     193 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 5.4e-12
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++tG+  gLG+ ++  la+ g   +v + R+  ++++     a++ alg + ++++aD+s++++++ l++++ a ++++   ++ Ag++r +   + t+
  CTQ27633.1  14 IVTGCDTGLGQGMTLGLAQAGC-DIVGINRKI-PHDT----AAQVLALGRRFHAIQADLSQENDMSGLVDQAVAAMGRVDILVNNAGIIRRHDALTFTE 106
                 89*****************997.688889993.3333....345667999************************************************* PP

                 HHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--TT-HHHHHHH CS
          KR 103 edleqvlapKvkGawnLhelled.....esldffvlfSSiagllgsagqanYaaaN 153
                 +d+++v+   +k++  L +++++      +   ++ ++S+ ++ g     +Y+a  
  CTQ27633.1 107 SDWDAVIDLNLKAVFFLSQAVARqfirqGEGGKIINIASMLSFQGGIRVPSYTASK 162
                 ***************99999877454445555677777777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2141.19
//
Query:       CTQ27634.1  [L=222]
Description: putative phosphoglycolate phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-24   85.5   0.0    5.2e-24   85.3   0.0    1.0  1  HAD_2           Haloacid dehalogenase-like hydrolase
    3.6e-17   63.4   0.0    9.4e-15   55.5   0.0    2.1  1  Hydrolase       haloacid dehalogenase-like hydrolase
    1.4e-05   25.6   0.2    2.3e-05   24.9   0.2    1.4  1  HAD             haloacid dehalogenase-like hydrolase
    7.8e-05   22.7   0.0    0.00013   21.9   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0   1.2e-27   5.2e-24       2     178 .]      11     191 ..      10     191 .. 0.95

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 1.2e-27
       HAD_2   2 iFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee.....kieellrkyneekkkkevkpydgvkelLeeLkeag 95 
                 iFD+Dg+l+d+e+l+ qa  e++e+ g+++  ++el  l+gl  + +++    ++  ++       ++++r+  e  +  +  +++gv+e++   k++g
  CTQ27634.1  11 IFDMDGLLIDSEPLWDQAEVEVMESLGVDTRRRDELPDLLGLRIDLVVDLWYAQQPWHGvdraeATARIIRRAIELVEA-SRPLLPGVREAVALCKAQG 108
                 9*******************************************99998888887777788888888888888888887.8999*************** PP

       HAD_2  96 yklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikviav 178
                 +k+g+++ +   ++e+ l+ +++ + Fd   ++e+   +KP+p+v++++   l++++++++  +Ds ++++a+k+a +++i+v
  CTQ27634.1 109 LKVGLASASPLMMLEKVLNMFELRDQFDALASAEHLPWSKPHPQVYLNCAAALGVDPQRCVALEDSVNGMIASKAARMRSIVV 191
                 ********************************************************************************987 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   2.1e-18   9.4e-15       1     209 [.       7     184 ..       7     185 .. 0.80

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 2.1e-18
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH.HHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgal.tgfatfigrgayaigkpewltaldippdlgaaigsaqsqgr 98 
                 i++ +fD+dG L+++ep   ++ v++                 + l       + +l +  +      ++      w +++          g   +++ 
  CTQ27634.1   7 IEAAIFDMDGLLIDSEPLWDQAEVEV----------------MESLGVDTRR-RDELpDLLGL-----RIDLVVDLWYAQQ-------PWHGVDRAEAT 76 
                 67889999999999999888888888................2222222222.2222133333.....4445555555555.......44444455666 PP

                 HHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  99 tvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamV 196
                   ++   ra ++++++ p  + p+++eava  ka+g++v+l++ +   + e+++n +  +d fda  +++    +kp+p+ ++  +  L+++p+++++ 
  CTQ27634.1  77 ARIIR--RAIELVEASRP--LLPGVREAVALCKAQGLKVGLASASPLMMLEKVLNMFElRDQFDALASAEHLPWSKPHPQVYLNCAAALGVDPQRCVAL 171
                 66677..9999*******..******************************************************************************* PP

                 ESSHHHHHHHHHT CS
                 xxxxxxxxxxxxx RF
   Hydrolase 197 GDgvnDaaalaaA 209
                 +D+vn++ a +aA
  CTQ27634.1 172 EDSVNGMIASKAA 184
                 *********9998 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.2   5.1e-09   2.3e-05       1     126 [.      10     134 ..      10     175 .. 0.63

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 5.1e-09
         HAD   1 alfDfDgTLldgdsle.....lllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpk.lldpgalel 93 
                 a+fD+Dg L+d+++l+     + ++  l+++ +r +++l   l l + +   +l   ++a++ ++   + +e+ a+ ++r+++ v + + ll pg++e+
  CTQ27634.1  10 AIFDMDGLLIDSEPLWdqaevEVME-SLGVDTRR-RDELPDLLGLRI-DLVVDL---WYAQQPWH-GVDRAEATARIIRRAIELVEASRpLL-PGVREA 100
                 7899999999998777666664444.22222222.122222222222.222222...22222222.12222444555555553333333346.****** PP

         HAD  94 laahraaGdrvvvvSgglrplvepllaelg.ade 126
                 +a ++a+G +v + S+++  ++e +l+ +   d+
  CTQ27634.1 101 VALCKAQGLKVGLASASPLMMLEKVLNMFElRDQ 134
                 ***************************9985332 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.9e-08   0.00013       2      51 ..     146     194 ..     145     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.9e-08
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSS CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltG 51 
                     ++KP+p +y   +++lg+dp+++++  D+    +++ ++a ++s+ V   
      CTQ27634.1 146 WSKPHPQVYLNCAAALGVDPQRCVALEDS-VNGMIASKAARMRSIVVPEA 194
                     79***************************.***************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1833.19
//
Query:       CTQ27635.1  [L=178]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-80  266.4   3.7    9.2e-80  266.2   3.7    1.0  1  YniB           YniB-like protein
  ------ inclusion threshold ------
      0.062   12.2   0.0      0.081   11.9   0.0    1.1  1  Molybdopterin  Molybdopterin oxidoreductase
        0.3   11.1   3.3       0.31   11.0   1.4    1.9  2  RseC_MucC      Positive regulator of sigma(E), RseC/MucC
        1.3    7.7   5.5       0.67    8.7   1.0    1.9  2  DUF2207        Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> YniB  YniB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.2   3.7   2.1e-83   9.2e-80       1     166 []      15     177 ..      15     177 .. 0.99

  Alignments for each domain:
  == domain 1  score: 266.2 bits;  conditional E-value: 2.1e-83
        YniB   1 vvGwvifipallstlisllkllyaksekkeginavladfikvlvelvrfntpfLnvFWknsPvPdfkellassniaFlliylliFvGlalqasgarlsr 99 
                 ++Gwvifipa+lstlis+lk++y++sekk gi+av++df++v++e++rfntpfLn+FW+nsP+Pdf+++    ni F++i++l+FvG+alqasgar++r
  CTQ27635.1  15 ILGWVIFIPAVLSTLISVLKFMYEHSEKKPGIDAVMMDFAHVMIEMMRFNTPFLNFFWYNSPLPDFHHS---LNIGFWIIFILVFVGMALQASGARMAR 110
                 78****************************************************************999...9************************** PP

        YniB 100 qvkeireeiedqlilekakGeegktreeleerivvprhtillqifpLyilPviiavigyvllkllgl 166
                 q+k++re+iedqlile+akG++g tre+l erivvprhtil+q+fpLy+lPvi++vigy++++llg+
  CTQ27635.1 111 QAKFLREGIEDQLILEQAKGADGLTREQLAERIVVPRHTILVQYFPLYVLPVIVIVIGYFFFSLLGF 177
                 ****************************************************************996 PP

>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.8e-05     0.081     154     196 ..      32      73 ..      18      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.8e-05
                    CGGGCSEEEEEHTTTHHHHHHHHHHHHHHCCCCTCHHHHHHEE CS
  Molybdopterin 154 llkfadewlaikpgtdaalalamghvilqelkvdkeflrkyty 196
                    +lkf +e+   kpg da + + ++hv+++ +  +++fl++  y
     CTQ27635.1  32 VLKFMYEHSEKKPGIDAVM-MDFAHVMIEMMRFNTPFLNFFWY 73 
                    67999**************.******************99765 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.49   2.2e+03      97     107 ..      92     102 ..      69     116 .. 0.57
   2 ?   11.0   1.4   6.9e-05      0.31      56      88 ..     143     175 ..     141     178 .] 0.90

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.49
   RseC_MucC  97 algallglvlg 107
                 +++ ++g++l 
  CTQ27635.1  92 FILVFVGMALQ 102
                 22222222222 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 6.9e-05
   RseC_MucC  56 vgieeksllkaallvYllPllllilgallgsal 88 
                 + +++ ++l + + +Y+lP++++++g++++s+l
  CTQ27635.1 143 IVVPRHTILVQYFPLYVLPVIVIVIGYFFFSLL 175
                 66889999999******************9987 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2     0.025   1.1e+02     199     244 ..       4      48 ..       2      75 .. 0.74
   2 ?    8.7   1.0   0.00015      0.67     385     430 ..      83     173 ..      78     177 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.025
     DUF2207 199 eraarlslallillilllilllllllllliklllwkkygrepkvke 244
                 ++a r++++  il +++ i ++l+ l+ ++k +++  + ++p ++ 
  CTQ27635.1   4 QQAGRIAVIKRILGWVIFIPAVLSTLISVLK-FMYEHSEKKPGIDA 48 
                 5666777788888888888888888888888.44555555555555 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00015
     DUF2207 385 alglgliilglilillallllvll.............................................lvfllilllillliaiivlllf 430
                  l++g++i++++++++ +l++ ++                                             + ++ +++l +++i+i++++++
  CTQ27635.1  83 SLNIGFWIIFILVFVGMALQASGArmarqakflregiedqlileqakgadgltreqlaerivvprhtilVQYFPLYVLPVIVIVIGYFFFS 173
                 567777777777777776666666999****************************************776666666666666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1267.55
//
Query:       CTQ27636.1  [L=132]
Description: putative hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-20   71.4   0.2    8.7e-20   70.9   0.2    1.2  1  4HBT             Thioesterase superfamily
  ------ inclusion threshold ------
      0.019   14.5   0.1      0.025   14.1   0.1    1.2  1  MaoC_dehydratas  MaoC like domain
       0.13   11.5   0.0       0.17   11.1   0.0    1.1  1  PS-DH            Polyketide synthase dehydratase


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.2   1.5e-23   8.7e-20       1      73 [.      26      97 ..      26     101 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 1.5e-23
                TSSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEET CS
        4HBT  1 gGvvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrde 73
                +G ++gG++++ +D ++++++++++ + ++v+v+ + ++flrpv +gd+++++ar+++ g+ts+++ +ev+ +
  CTQ27636.1 26 NGDIFGGWLMSQMDIGGAIMAKEIAQG-RVVTVRVDGMTFLRPVAVGDVVCCYARCVKRGNTSVTINIEVWVK 97
                599***********************8.*******************************************76 PP

>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   4.3e-06     0.025      61     115 ..      40      94 ..      21     103 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.3e-06
                      HHHHHHHHHHSTTEGGGEEEEEEEE-S--BTTCEEEEEEEEEEEEEEEEEEEEEE CS
  MaoC_dehydratas  61 ivaklveeelgdnvvarvgeikvrFtkpVlpgdtlkvelevvgkrdvrktkkvev 115
                      i  +++++e++++ v  v+ + + F +pV +gd +  ++ +v   +   t++ ev
       CTQ27636.1  40 IGGAIMAKEIAQGRVVTVRVDGMTFLRPVAVGDVVCCYARCVKRGNTSVTINIEV 94 
                      6678899999999999*******************88888887544444444443 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.9e-05      0.17     223     273 ..      46      95 ..      35      98 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.9e-05
                 --------EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE CS
       PS-DH 223 eaekadaaylPvaierlrvyrpssaageelwvharleeegarsivadltlv 273
                 ++e a+  ++ v+++ +++  ++ a g+ + ++ar+ ++g++s+++ ++++
  CTQ27636.1  46 AKEIAQGRVVTVRVDGMTFL-RPVAVGDVVCCYARCVKRGNTSVTINIEVW 95 
                 46889999************.6899********************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 966.90
//
Query:       CTQ27637.1  [L=727]
Description: iron-enterobactin outer membrane transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-55  189.4  32.5    2.2e-55  189.4  32.5    1.7  2  TonB_dep_Rec  TonB dependent receptor
    7.8e-30  103.6   0.8    2.5e-29  102.0   0.8    2.0  1  Plug          TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.4      0.16   1.4e+03      50     124 ..     189     206 ..      81     253 .. 0.54
   2 !  189.4  32.5   2.4e-59   2.2e-55       2     469 ..     256     725 ..     254     726 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.16
                   EECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECEEEEEEEEEEEEEEEEE CS
  TonB_dep_Rec  50 ysetdnkrlrlgydydlddnlswklslraglnYsstdgdsdynnsglgggrsynrdndyyglgnvlaaeldlngd 124
                    ++++                                                          +++ a+++l+g 
    CTQ27637.1 189 ENNKEG---------------------------------------------------------TTNRANFNLSGP 206
                   111111.........................................................111222222222 PP

  == domain 2  score: 189.4 bits;  conditional E-value: 2.4e-59
                   CCCTSSTTSXEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEECCCEECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE CS
  TonB_dep_Rec   2 wqrsggalsddnllanngdylrytdggdlgsalsrgylgtnplyygdnysetdnkrlrlgydydlddnlswklslraglnYsstdgdsdynnsglgg 98 
                   w+     ++++++l+  + y+r ++ +  ++++s+g+l++n+   +  y+  +n+ +r ++ ++++   +w ++ +ag++Y +t+++  +++s  + 
    CTQ27637.1 256 WK-----MTPQQILDFSYAYSRQGNIYAGDTQYSNGNLSPNG-LVDSLYGHETNRLYRQSWGLTYNGLWDW-GQSKAGVYYEKTNNTRLQEGSTGRV 345
                   66.....78899999999*****************9999999.8888888888999999999999999889.6777677777444444444444444 PP

                   EEEEEEEECEEE...EEEEEEEEEEEEEEEEEE.EEEEEEEEEEE..EEE....EECCBEESCCTC.....CSEEEEEEEEEEEEEEEEEEEEETTE CS
  TonB_dep_Rec  99 grsynrdndyyg...lgnvlaaeldlngdlwfG.snladgldyrk..lsd....dgydaydplnps.....gdasdsvdrdsyglyaqdnikltdrl 180
                      + +++dy +    + +++ e+++ +  w+  ++l+ g++++   l+d    +++++++ + p+     +++s++ +++ +g+y++dni   +  
    CTQ27637.1 346 -EGMINSEDYATsrlESWRTTSEFNVPFF-WLAdQTLTLGMEWNHdqLDDpasmQATNSNGETIPGtsgdpTQRSTKNSATLTGIYLEDNIEAVPGT 440
                   .3333333333333322222333322222.3334444444****54566656665555555555557744444444444444468********99** PP

                   EEEEEEEEEEETTCSSSS...EEECCCEEEEEEEEEEEE.CETTEEEEEEEEEEEE-STTCTTCEEEE.........CCC...CCEEEECSTT---E CS
  TonB_dep_Rec 181 tltlGlRydhysvfgkdlragafsrsgsafsPsvglryr.ptddlslrasysrgfraPslgelyaggs.........nga...ggalsngnpdLkPE 264
                   +l +G+R+d++++f            gs++sPs++l+ + + d ++l+a+ +r f+aP+l++ + g+          n +   g+ +  gnpdL+PE
    CTQ27637.1 441 NLIPGIRFDYHNQF------------GSNWSPSLNLS-QeLGDMFTLKAGIARVFKAPNLYQSSKGYLlstrgngcpN-TiaeGSCYLLGNPDLDPE 523
                   **************............7999*******.6699999*****************9999989998754431.03446666668******* PP

                   EEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEESSSSCSTTTCS..EEEEEEEEEEEEEEEEEEEEEEETTEE..EEEEEEEEEE.EEECECEEEC CS
  TonB_dep_Rec 265 tsknyelGlkldddrlnltlayFridiknfittdpdgpslgglgd..fqyqNvgkarikGvElelsyrltpgWg..lglsgggytY.ydagddsdad 356
                   +s n e+G++++ + + + +++Fr+d+kn i++++ + + ++ g+   q+qN gka + G+E +l   l p ++  l+ +++  t+ ++++ +    
    CTQ27637.1 524 ISINKEIGIEFNLNGYAAGVTWFRNDYKNKIVSGTEVLGYTSSGNniLQWQNGGKAVVEGLEGNL---LIPVLRdvLSWRTN-ATWmLKSESK---- 612
                   *************************************99999999******************99...33333344444556.9998666666.... PP

                   TTTTSSTTEESEEEEEEEEEECSEEEEEEEESEEEEEEECCSSEEEEECE...CCEE.....EE--EEEEEEEEEEEESSSEEEEEEEESTTETCSC CS
  TonB_dep_Rec 357 dggnplpnvPkhtanlgltYkfpaggWgaglllagarYvavggrrygdaa...ntfr.....rvpgYtlldlslgYklpknltlslgvnNLfdkryy 445
                    +gnpl+ +Pk+t+n  l++ + +++++     a+++++ +g +  +++a   n+++     +v++Y ++ +   Y+l+++++l++g+ NLfdk   
    CTQ27637.1 613 ETGNPLSVIPKYTVNTMLDW-QVNDALS-----ANVNWTLYGRQKPRQYAeirNETGtlattEVGAYSIVGIGTQYQLNRDIRLNAGISNLFDK-QL 702
                   89*************66997.2234455.....67777777776666555544444466688*******************************4.34 PP

                   EEESTTTTTCCEB--SEEEEEEEE CS
  TonB_dep_Rec 446 assgyyglggypgpgRtfrlglry 469
                   +  +  g ++y++pgR +++g+++
    CTQ27637.1 703 YRENA-GASTYNEPGRAYYAGVTL 725
                   44444.599*************97 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.8   2.8e-33   2.5e-29       8     108 .]      51     165 ..      44     165 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 2.8e-33
                 EEEEEEHHHHHHT.TTSSHHHHHTTSTTEEE...ECCCCSTTSEEEEETTB-GGCSEEEETTEEESC..........CCCSCTCGCSSBGGGEEEEEEE CS
        Plug   8 svsvvtaediekq.gatsladalqgvpgvnv...sssgggggassisiRGlgsnrvlvlvDGvpian..........ggsgagdlssidpedierievl 92 
                  vs++taedi kq ++++l+d+++++pgvn    s+sg++g++ +i iRG+g++++l+l+DGvp+++           +++ gd +++++e++erievl
  CTQ27637.1  51 GVSIITAEDIAKQpPVNDLSDIIRKMPGVNLtgnSASGSRGNNRQIDIRGMGPENTLILIDGVPVTSrnavryswrgERDTRGDSNWVPAEMVERIEVL 149
                 599**********77******************9999999***********************************99999999**************** PP

                 ESSCHCTTSSTGSSEE CS
        Plug  93 kGpasalyGsdaigGv 108
                 +Gpa+a+yGs+a+gGv
  CTQ27637.1 150 RGPAAARYGSGAAGGV 165
                 ***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 4835.68
//
Query:       CTQ27638.1  [L=179]
Description: putative intracellular septation protein involved in cell division [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-72  243.0  21.6    2.4e-72  242.8  21.6    1.0  1  IspA          Intracellular septation protein A
  ------ inclusion threshold ------
      0.018   15.5   0.7      0.018   15.5   0.7    3.6  3  DUF202        Domain of unknown function (DUF202)
       0.06   13.0  18.5      0.042   13.5  11.8    2.0  2  TauE          Sulfite exporter TauE/SafE
       0.11   12.8   3.2       0.42   11.0   3.1    2.0  1  MgtC          MgtC family
        3.2    7.4  16.6    4.7e+03   -2.9  16.6    2.4  1  Wzy_C         O-Antigen ligase
        5.6    7.3   5.2        4.9    7.5   0.2    2.6  3  DUF3619       Protein of unknown function (DUF3619)


Domain annotation for each model (and alignments):
>> IspA  Intracellular septation protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.8  21.6   7.9e-76   2.4e-72       1     175 [.       1     175 [.       1     176 [. 0.99

  Alignments for each domain:
  == domain 1  score: 242.8 bits;  conditional E-value: 7.9e-76
        IspA   1 mkllldllPlilFfvayklagillAtavlivatvlqiailklrtrkvekmqlislvlvvvfGgltlllhdetFikwKptvlyvlfalvLllsllilkkn 99 
                 mk++ld+lPl++Ff++ykl++i++At++livat++ ++++++r+rkvekm li++vlv+vfGglt+++h+++FikwK+tv+y+lfa++Ll+s++++kk+
  CTQ27638.1   1 MKQFLDFLPLVVFFAFYKLYDIYAATTALIVATAVVLIYSWVRYRKVEKMALITFVLVAVFGGLTIFFHNDEFIKWKVTVIYALFAGALLFSQWVMKKP 99 
                 9************************************************************************************************** PP

        IspA 100 llkrllgkeleLpdevWrkLnlawalfflvlavlnlvvaanlsedtWvnfklFGllgltlvfiliqvillkkhlke 175
                 l++r+lgkel+Lp++vW++Lnlawa+ff++++++n+++a+ l +++Wvnfk+FGl++ltlvf+l+++i++++h+++
  CTQ27638.1 100 LIQRMLGKELSLPQQVWSRLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLVFTLLSGIYIYRHMPQ 175
                 **************************************************************************87 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.7     6e-06     0.018      42      67 ..      24      49 ..       7      50 .. 0.88
   2 ?   -1.7   0.1       1.4   4.1e+03      43      50 ..      57      64 ..      51      71 .. 0.43
   3 ?   -1.6  10.2       1.3   3.9e+03      10      33 ..      73     141 ..      72     175 .. 0.54

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6e-06
      DUF202 42 ilglilivlgiltllvglvrylrrqr 67
                ++ ++liv+++++l++++vry+++++
  CTQ27638.1 24 AATTALIVATAVVLIYSWVRYRKVEK 49
                46678*****************9987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
      DUF202 43 lglilivl 50
                l +++ +l
  CTQ27638.1 57 LVAVFGGL 64
                22222222 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.3
      DUF202  10 fLaWlRtslalialglallrffl.............................................t 33 
                 f+ W  t ++++++g++l+  +                                               
  CTQ27638.1  73 FIKWKVTVIYALFAGALLFSQWVmkkpliqrmlgkelslpqqvwsrlnlawavffilcglaniyiafwL 141
                 677888888888888888876666777777777777664443333333333333333333333333333 PP

>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5  11.8   1.4e-05     0.042      25     136 ..       9     131 ..       7     135 .. 0.56
   2 ?    4.6   3.4    0.0075        22      64     109 ..     118     171 ..     107     178 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
        TauE  25 PlLlll.l.ppavavatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpsellkllfgvlllllallmllrkkr........ 113
                 Pl +++ +     + a++++++vat+++ ++++ r ++v+  +l++++l+++ G+l    ++ + ++e++k+ + v+ +l+a  +l+++          
  CTQ27638.1   9 PLVVFFaFyKLYDIYAATTALIVATAVVLIYSWVRYRKVEKMALITFVLVAVFGGLT---IFFH-NDEFIKWKVTVIYALFAGALLFSQWVmkkpliqr 103
                 666664444333345555556777777778888887779999999999988888776...4333.4556666666666555555555333333337888 PP

        TauE 114 ......srakgrerrptaillvligglvG 136
                       s +++++ r +++++v++ +l+G
  CTQ27638.1 104 mlgkelSLPQQVWSRLNLAWAVFF-ILCG 131
                 777666333334444444444333.3344 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0075
        TauE  64 rlllllllgsliGallGallllllpsel........lkllfgvlllllallmll 109
                 rl l ++++ ++ +l+ ++++ +lp+++        l++l  v+ ll+++++++
  CTQ27638.1 118 RLNLAWAVFFILCGLANIYIAFWLPQNIwvnfkvfgLTALTLVFTLLSGIYIYR 171
                 444566666677777777777777777445666677777777788888887765 PP

>> MgtC  MgtC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.1   0.00014      0.42       1      67 [.      29      91 ..      29     174 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
        MgtC  1 LllAlllGlliGleRelrekaaGlRTfaLvalgaalfvllslelaesrvaaqvvsgigflgagvilk 67
                L++A+++ l+  + R ++ + + l Tf+Lva+++ l +++    ++   +++ v++i  l ag++l 
  CTQ27638.1 29 LIVATAVVLIYSWVRYRKVEKMALITFVLVAVFGGLTIFF----HNDEFIKWKVTVIYALFAGALLF 91
                68999999999999************************99....33456666666666666665553 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9  16.6       1.6   4.7e+03      18      67 ..      28      77 ..      10     169 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.6
       Wzy_C 18 giigllvalivlliifykrripfllllgilvgvilliilfvlstnletlk 67
                ++i++ + ++++ +++y++  + +l+ ++lv+v  +++ f+ ++ + ++k
  CTQ27638.1 28 ALIVATAVVLIYSWVRYRKVEKMALITFVLVAVFGGLTIFFHNDEFIKWK 77
                44444444444555555555544444445555555555555555554444 PP

>> DUF3619  Protein of unknown function (DUF3619)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.3      0.15   4.4e+02      78     110 ..      25      57 ..      16      60 .. 0.74
   2 ?    7.5   0.2    0.0016       4.9      67      93 ..     109     137 ..      75     143 .. 0.79
   3 ?   -1.6   0.0         1   3.1e+03      79      96 ..     154     172 ..     138     178 .. 0.61

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.15
     DUF3619  78 alpllalvvgLvgiaywqdqqrvaelaeiDaaL 110
                 a+++l+++ ++v+i+ w   ++v+++a i  +L
  CTQ27638.1  25 ATTALIVATAVVLIYSWVRYRKVEKMALITFVL 57 
                 445555558899999999999999998776555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0016
     DUF3619  67 e..agswlrrlalalpllalvvgLvgiay 93 
                     +++++rl+la++++ +++gL+ i++
  CTQ27638.1 109 LslPQQVWSRLNLAWAVFFILCGLANIYI 137
                 2558899******************9976 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1
     DUF3619  79 lpllalv.vgLvgiaywqd 96 
                 l++l+lv  +L gi+++ +
  CTQ27638.1 154 LTALTLVfTLLSGIYIYRH 172
                 5666777455666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1073  (0.0598472); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 1387.93
//
Query:       CTQ27639.1  [L=247]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-97  324.9  15.8    4.3e-97  324.7  15.8    1.0  1  UPF0259   Uncharacterised protein family (UPF0259)


Domain annotation for each model (and alignments):
>> UPF0259  Uncharacterised protein family (UPF0259)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.7  15.8  2.4e-101   4.3e-97       1     248 []       1     244 [.       1     244 [. 0.98

  Alignments for each domain:
  == domain 1  score: 324.7 bits;  conditional E-value: 2.4e-101
     UPF0259   1 msitvnslyrDtinflrnkiaailllsllsafitvlidsiilPnaeellilsilendkvinsgsssllelvqklsieqkkiLlklsiaktlssLignal 99 
                 msit++s+yrDt nf+rn++++ill++ll+afitv++++ ++P++e+l+ils+ +n     +gs +l+elvq++++eq+++Ll++s+a+t+s+L+gna+
  CTQ27639.1   1 MSITAKSVYRDTGNFFRNQFITILLIALLCAFITVVLGHAFSPSDEQLSILSEGDNL----AGSAGLFELVQNMTPEQQQVLLRASAASTFSGLVGNAI 95 
                 9**************************************************765554....6789********************************** PP

     UPF0259 100 LlgnlitliqlvsekkrvsilnaiglsllllPklliLiflttlliqlGllllliPGiivaillslsPiillkekksildsikasvnitfknikliaPav 198
                 L+g++++liqlvs+++rvs+l+aig+s+++lPkll Li  tt+l+q+G++l+l+PG+++ai+l+++Pi+l+++k++il ++++s++++++n++l+aPa+
  CTQ27639.1  96 LVGGVLLLIQLVSAGHRVSALRAIGASAPVLPKLLLLILFTTFLVQMGMMLVLVPGVLLAIVLAFAPIMLVQDKMGILGAMRSSMRLAWANLRLVAPAI 194
                 *************************************************************************************************** PP

     UPF0259 199 llWllvklllllliskfsllskkiaflllnllsnlisailiiYlfrlYll 248
                 + Wl++k+llll++s+f++l++++ ++++n++snlisa+l+iYlfr+Y+l
  CTQ27639.1 195 IGWLVAKTLLLLFASSFAALTPNVGAVVINTVSNLISALLLIYLFRVYML 244
                 *************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1760.08
//
Query:       CTQ27640.1  [L=137]
Description: putative ferredoxin [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-11   44.6   2.8    2.6e-11   44.0   2.8    1.2  1  CxxCxxCC  Putative zinc- or iron-chelating domain


Domain annotation for each model (and alignments):
>> CxxCxxCC  Putative zinc- or iron-chelating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   2.8   1.5e-15   2.6e-11       1      85 []       6      98 ..       6      98 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 1.5e-15
    CxxCxxCC  1 eCkeCgaCCk............elkvklteedlerlkaaevaeeeeeskkiakadgrCvfldeetk...lCkiYeeRpkicrlfpasekeellaraetCa 85
                +C++CgaCC+            +++  ++ + +e l+++ ++++ +++++      rC +l+++ +    C+iYe+Rp+ cr+f +s   e++  +++C+
  CTQ27640.1  6 PCMTCGACCAyfrvsfywaeadDAGGLVPSALTEPLTPFLRCMSGTNQRQS-----RCAALSGDIGdavHCTIYENRPSPCREFAMS--GENGEENDACN 98
                5********************9999***********************999.....******9998999**************9996..88888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1002.46
//
Query:       CTQ27641.1  [L=212]
Description: outer membrane protein W [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-70  237.3   0.1    1.4e-70  237.1   0.1    1.0  1  OmpW             OmpW family
    9.9e-12   45.3   5.3    1.2e-11   45.0   5.3    1.1  1  OMP_b-brl        Outer membrane protein beta-barrel domain
    2.9e-05   23.9   0.0    7.5e-05   22.6   0.0    1.8  1  OprF             OprF membrane domain
     0.0064   16.5   0.2      0.012   15.6   0.2    1.7  1  OMP_b-brl_2      Outer membrane protein beta-barrel domain
     0.0099   16.0   0.1      0.032   14.3   0.0    1.7  2  Opacity          Opacity family porin protein
  ------ inclusion threshold ------
      0.031   13.9   4.9        1.4    8.5   0.1    2.9  2  Autotransporter  Autotransporter beta-domain
       0.08   11.4   0.1       0.11   10.9   0.1    1.2  1  Porin_5          Putative porin


Domain annotation for each model (and alignments):
>> OmpW  OmpW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.1   0.1   5.4e-74   1.4e-70       1     192 []      23     212 .]      23     212 .] 0.98

  Alignments for each domain:
  == domain 1  score: 237.1 bits;  conditional E-value: 5.4e-74
                 STTEEEEEEEEEEECC-SCE--SECTTE-TTSCCECSSCECEEEEEEEECTTTEEEEEEEES.ECCCEEEC.SSTTCEECCCEEE-EEEEEEEE.TSTT CS
        OmpW   1 eegsliirarltkvapnasqkklkvdsavsgsevavgsdvqltlsvtyfftdnvavEllaat.tahnirvsglgsngkvgkikvlPptltlqYh.geas 97 
                 e+g+++ira+ ++v p++ ++++    + s + ++v++++ql+l++ty++tdn++vEllaat ++h++++     +g ++++++lPptl++q++ g+a+
  CTQ27641.1  23 EAGEFFIRAGTATVRPTEGSDNV----LGSLGSFNVSNNTQLGLTFTYMATDNIGVELLAATpFRHKVGTG---PTGTIATVHQLPPTLMAQWYfGDAQ 114
                 589******************99....*****************************************998...799*****************9**** PP

                 SSEEEEEEEEEEEEECCECCCHHC....TCCEEEE-SECEEEEEEEEEEECSSSEEEEEEEEEECTEECCEEETCTSSCCSCCCCSSECEEEEEEEEEE CS
        OmpW  98 skvrPYvGaGvnyttffdeklgst....gltdlklkdslgaagqiGvDikvkddwllnldvkklflktkaeiklvgskklkskvkLdPwvvsigigyrF 192
                 skvrPYvGaG+nyttff+e++++t    gl+dl+lkds+gaagq+G+D+ +++dwlln++v++++++t++++k +g++ +k++ +LdPwv+++++gyrF
  CTQ27641.1 115 SKVRPYVGAGINYTTFFNEDFNDTgkaaGLSDLSLKDSWGAAGQVGLDYLINRDWLLNMSVWYMDIDTDVKFK-AGGVDQKVSTRLDPWVFMFSAGYRF 212
                 *************************************************************************.99**********************9 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   5.3   4.9e-15   1.2e-11       2     178 .]       7     212 .]       5     212 .] 0.71

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 4.9e-15
   OMP_b-brl   2 allllaalsaaaaaassfggfyvggglglskvkv.........dgvgsdsgfgfgvgagyefndnvgvegglsy..sgdkdysgsgktdik.inllsvp 88 
                 a+l l+ ls+ +  a + g f +++g +++  +          + +++++++++g++ +y+ +dn+gve+ ++     +  +++    + +  +  ++p
  CTQ27641.1   7 AALILGTLSTGSVWAHEAGEFFIRAGTATVRPTEgsdnvlgslGSFNVSNNTQLGLTFTYMATDNIGVELLAATpfRHKVGTGP----TGTiATVHQLP 101
                 566666677775556667999999888877555445334333333366668******************999965233333333....33314555566 PP

   OMP_b-brl  89 vn..agyafnlsds.vlpyggaGlg...ytkvevdvsgng......asdsdtdfglglgaGveyaladnwslkaeYrytdlks...........dadnd 164
                  +  a ++f+ ++s v+py+gaG++   + +++++    g      + + ++ +g  +++G+ y ++ +w l+ +  y+d+++                
  CTQ27641.1 102 PTlmAQWYFGDAQSkVRPYVGAGINyttFFNEDFNDT--GkaaglsDLSLKDSWGAAGQVGLDYLINRDWLLNMSVWYMDIDTdvkfkaggvdqK---V 195
                 664477778776669**********544333333333..26699*9********************************99988888776655443...0 PP

   OMP_b-brl 165 ...lknntfqvgvgyrF 178
                    l+   f +++gyrF
  CTQ27641.1 196 strLDPWVFMFSAGYRF 212
                 4559999*********9 PP

>> OprF  OprF membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.9e-08   7.5e-05      46     126 ..      53     135 ..       4     145 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.9e-08
                 -----EEEEEEEEEESSSSEEEEE.EEEEEE---------.----EEEEEEEEEEEE-S-SSSEEEEEEEEEEEEEEEEEE-S CS
        OprF  46 nlkdgdlyGasiGyfltddvelnl.sydevndvrstdetg.skkvkGdktsldalyhfgtaGdalrpyveaGlahqsitnvad 126
                 n+ + ++ G +  y+ td++ ++l +    ++  +t  tg    v+    +l a+++fg+a  ++rpyv aG+   +  n + 
  CTQ27641.1  53 NVSNNTQLGLTFTYMATDNIGVELlAATPFRHKVGTGPTGtIATVHQLPPTLMAQWYFGDAQSKVRPYVGAGINYTTFFNEDF 135
                 67889999***********9998723444445455555541568999999***********************9887766544 PP

>> OMP_b-brl_2  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   4.9e-06     0.012      88     172 ..      96     175 ..      46     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.9e-06
  OMP_b-brl_2  88 tstylelPllakykikks..nvrlflfaGpyfgylleskesgstsdvddgkakdasydsdklkkfdygltigagyeffkklglelry 172
                  t+++l   l+a+++++++   vr+++ aG+++   +++ ++ + + ++ +       d +   ++++  ++g++y +++ + l+ ++
   CTQ27641.1  96 TVHQLPPTLMAQWYFGDAqsKVRPYVGAGINYTTFFNEDFNDTGKAAGLS-------DLSLKDSWGAAGQVGLDYLINRDWLLNMSV 175
                  667777789******999999****************9999665443333.......355668899999999999999977655443 PP

>> Opacity  Opacity family porin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0         1   2.7e+03      64      90 ..      52      78 ..      44      89 .. 0.59
   2 !   14.3   0.0   1.2e-05     0.032      43     111 ..     109     180 ..      96     199 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1
     Opacity 64 akvsasaklpkkeafasetrvGlGvla 90
                ++vs++++l+ + +++++ ++G+  la
  CTQ27641.1 52 FNVSNNTQLGLTFTYMATDNIGVELLA 78
                445555555555555555555555555 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.2e-05
     Opacity  43 ydfdtgskvkPyvGvrva....sngakvsasaklpkkeafasetrvGlGvlaGvkykltpnltldtgvrynrl 111
                 y  d +skv+PyvG+ +       + +++ + k +  +  + + + G     G +y ++ ++ l+ +v y  +
  CTQ27641.1 109 YFGDAQSKVRPYVGAGINyttfF-NEDFNDTGKAAGLSDLSLKDSWGAAGQVGLDYLINRDWLLNMSVWYMDI 180
                 6679***********99855442.4566677777777777778888888888999999999999999888776 PP

>> Autotransporter  Autotransporter beta-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.0    0.0063        16     126     161 ..     108     144 ..      39     150 .. 0.73
   2 ?    8.5   0.1   0.00056       1.4      27      60 ..     156     195 ..     150     212 .] 0.75

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0063
                      E-CECCGCEEEEEEE..EEEEEEEEEEEEE-SS.TTSE CS
  Autotransporter 126 ydfklsggwtlePqa..qltysrlkldgftesggaaal 161
                      + f    +  + P++  +++y+ +  ++f+++g aa+l
       CTQ27641.1 108 WYFGD-AQSKVRPYVgaGINYTTFFNEDFNDTGKAAGL 144
                      44444.55556666433678888888888888877776 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00056
                      EEEEEEEEEETCCEEEEEEEEEEEEEEEE......TTTTE CS
  Autotransporter  27 gvqlGaDyrlgdnlrlGvafgygrssadv......dgagg 60 
                       +q+G+Dy ++ ++ l + + y + ++dv       +   
       CTQ27641.1 156 AGQVGLDYLINRDWLLNMSVWYMDIDTDVkfkaggVDQKV 195
                      589*************************966664444444 PP

>> Porin_5  Putative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   4.4e-05      0.11     259     322 ..     113     180 ..      91     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.4e-05
     Porin_5 259 areglslfatlGaFpv..yntdlnfssn..eeeklksedkwLfgaQlgadwklkekselkvaaayYdf 322
                 a++++++++ +G+     +n+d+n + +    + l+ +d w  ++Q+g+d+ ++++  l +++ y d 
  CTQ27641.1 113 AQSKVRPYVGAGINYTtfFNEDFNDTGKaaGLSDLSLKDSWGAAGQVGLDYLINRDWLLNMSVWYMDI 180
                 46788999999985444799***987754478999*************************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1528.64
//
Query:       CTQ27642.1  [L=225]
Description: conserved hypothetical protein with PKHD hydroxylase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-19   70.2   0.9      2e-19   69.4   0.9    1.4  1  PKHD_C          PKHD-type hydroxylase C-terminal domain
    3.3e-13   50.3   0.0    4.9e-13   49.8   0.0    1.3  1  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
       0.11   13.0   0.0       0.22   12.0   0.0    1.6  1  2OG-FeII_Oxy    2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> PKHD_C  PKHD-type hydroxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.9   3.4e-23     2e-19       1      43 []     182     224 ..     182     224 .. 0.99

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 3.4e-23
      PKHD_C   1 DaqRalLfdLDqaIqrlraelgddpavvaLtgvYHNLLRrWaE 43 
                 D+qRa+L+dLD++Iq+l+a+ gd ++v++L ++YHNLLR+W+E
  CTQ27642.1 182 DKQRAMLYDLDRTIQSLKARFGDGEEVLSLLNMYHNLLRQWTE 224
                 9****************************************98 PP

>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   8.2e-17   4.9e-13       3      95 ..      84     175 ..      82     176 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 8.2e-17
                     EEEE-TT-EEEEE-SS--...--TT.-.EEEEEEEEE....ET-B--EEE..........---TT-EEEEE-..B-TEEE--B.-SS-EEEEEEE CS
  2OG-FeII_Oxy_3   3 vlrygegqeykpHvDnfe...keegsgqrrltvllyLnekeseeGGelelyekdkeavkikpkkgrlvlFesdellpHevlpvtkggeRlsltgw 94 
                     ++ryg+g+ y  HvD      +e g  +  l+++l+L ++es+eGGel++ e++  ++++k  +g lvl+++++l  H+v+pvt+g  R +  +w
      CTQ27642.1  84 FNRYGPGETYGFHVDGAVrqnGEAGWMRTDLSATLFLCDPESYEGGELVI-EDTYGQHRVKLPAGHLVLYPASSL--HCVTPVTRG-VRQASFLW 174
                     79*************9888887777788*********99***********.44449999999**********989..******886.******** PP

                     E CS
  2OG-FeII_Oxy_3  95 i 95 
                     i
      CTQ27642.1 175 I 175
                     8 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.7e-05      0.22       5     100 ..      83     176 ..      79     177 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.7e-05
                   EEEEE.....E-S---------EEEEEESSSEEE.EEEE-....TT---EEEETE.EEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTG CS
  2OG-FeII_Oxy   5 lvlny.....ypphpdpevilglgahtdasllti.llqdd....vgglevfkdgk.wlrvppvdnslivniGdallflsngryksvlHrVlpvnege 90 
                   l+++y     y +h d +v +  +a   ++ l+  l+ +d             g+ +++ +  ++ +++ +G    +l+     s+lH V+pv++g 
    CTQ27642.1  83 LFNRYgpgetYGFHVDGAVRQNGEAGWMRTDLSAtLFLCDpesyE-------GGElVIEDTYGQHRVKLPAGHL--VLYPA---SSLHCVTPVTRGV 167
                   667777777777777777622223333333333333333312322.......3555666666678889999995..77777...7***********9 PP

                   SEEEEEEEE- CS
  2OG-FeII_Oxy  91 rRvsiayfie 100
                    R ++ ++i+
    CTQ27642.1 168 -RQASFLWIQ 176
                   .*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1786.63
//
Query:       CTQ27643.1  [L=761]
Description: putative TonB-dependent iron outer membrane transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-54  184.5  45.2    6.7e-54  184.5  45.2    1.5  1  TonB_dep_Rec  TonB dependent receptor
    1.1e-18   67.8   5.6    1.2e-18   67.6   3.0    2.4  2  Plug          TonB-dependent Receptor Plug Domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.5  45.2   7.5e-58   6.7e-54       9     469 ..     243     759 ..     232     760 .. 0.71

  Alignments for each domain:
  == domain 1  score: 184.5 bits;  conditional E-value: 7.5e-58
                   TSXEEEEEEEEEEEEEETTTTEEEEEEE.................EEEEEEEEEECCC..EECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEE CS
  TonB_dep_Rec   9 lsddnllanngdylrytdggdlgsalsr.................gylgtnplyygdn..ysetdnkrlrlgydydlddnlswklslraglnYsstd 86 
                   l++ ++l+ n+ + r +++ d g ++ +                 g+ +t++ +yg++  y++ ++++ +l +++dl++n     ++r+++++s+++
    CTQ27643.1 243 LDTPTRLYLNYLHVRQNNTPDGGIPTVGlpgysapspkyaalnsaGKVDTSN-FYGTDsdYDKSTTDSGTLRFEHDLTEN--T--TVRNTTRWSRVK 334
                   4555556666555555555555555555777778888888888887777777.4444447889999999**999999888..6..99*******777 PP

                   EEEEEEEE.EEEE......EEEEEEEE..............CEEE..EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECCBEESCCTC...... CS
  TonB_dep_Rec  87 gdsdynns.glgg......grsynrdn..............dyyg..lgnvlaaeldlngdlwfGsnladgldyrklsddgydaydplnps...... 154
                   + +  ++  g ++             n              d  +  l+n+++ + ++n +  +G+  ++g+++++ ++++y+ +  ++p+      
    CTQ27643.1 335 QEYLLTAVmGGANnitapdI------NdvntwswsrlvntkDVSNriLTNQTNITSTFNTGS-IGHDVSAGVEFTRENQTNYGVNARTAPAvnlyhp 424
                   76666666444445554441......233234343333222112233333333333333332.3366666677776333233333333333334555 PP

                   ...........CSEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEETTCSSSS..........................EEECCCEEEEEEEEEE CS
  TonB_dep_Rec 155 ...........gdasdsvdrdsyglyaqdnikltdrltltlGlRydhysvfgkdlrag.......................afsrsgsafsPsvglr 217
                              + a+++ ++d++g+ya d+++lt+r  +++GlR d+y ++ ++ +a                        +  +sg+ +++++g+ 
    CTQ27643.1 425 vsnlsiggldrNGANANGQTDTFGIYAFDTLTLTERIEINGGLRLDNYHTKYDSATACggsgrgaiacppgqstgspvttvDTAKSGNLVNWKAGAL 521
                   566799999*98999999****************************99999444444444555555555555555556677667777888******* PP

                   EECETTEEEEEEEEEEEE-STTCTTCEEEECCCCCEEEECS.TT---EEEEEEEEEEE..EEETTEEEEEEEEEEEEEEEEEEESSSSCSTTTCSEE CS
  TonB_dep_Rec 218 yrptddlslrasysrgfraPslgelyaggsngaggalsngn.pdLkPEtsknyelGlk..ldddrlnltlayFridiknfittdpdgpslgglgdfq 311
                   yr+t++ +++++y+ + + P  g  +a      g+ +s  n +d+kP+++k+ elG k   +d+rl l++a+Fr+di n +++ +d          +
    CTQ27643.1 522 YRLTEQGNVYVNYAISQQ-PPGGSSFALAAS--GSGNSA-NrTDFKPQKAKSSELGTKwqIFDNRLLLSAALFRTDIENEVAANDD---------GT 605
                   ******************.766666663322..222222.2477**************665669999*******************.........88 PP

                   EEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECEC...EEECTTTTSSTTEESEEEEEEEEEECSEEEEEEEESEEEEEEECCSSEEEEEC CS
  TonB_dep_Rec 312 yqNvgkarikGvElelsyrltpgWglglsgggytYydagdd...sdaddggnplpnvPkhtanlgltYkfpaggWgaglllagarYvavggrrygda 405
                   ++++gk r+ G+El+++++ltp+W++   +g yt ++a+++     a+dg   l+++Pkh ++l++ Y + ++++++g+   g+rYv  g+ r+g +
    CTQ27643.1 606 WSQYGKKRVEGYELSATGNLTPDWTI--IAG-YTQQHATVTegqNVAQDGSSALAYTPKHAFTLWTQY-QATSDLSVGG---GVRYV--GSLRRGSD 693
                   889**********************5..555.996444333344788899999**************9.5567788555...99**7..77555544 PP

                   E..CCEEEE--EEEEEEEEEEEESSSEEEEEEEESTTETCSCEEESTT..TTTCCEB--SEEEEEEEE CS
  TonB_dep_Rec 406 a..ntfrrvpgYtlldlslgYklpknltlslgvnNLfdkryyassgyy..glggypgpgRtfrlglry 469
                      +t++ + gY++ d+ lgY++++nl l+l+++NLfd+ y as      g+++ pg +Rtf+l++++
    CTQ27643.1 694 GavGTPDHTEGYWVADAKLGYRVNSNLDLQLNMYNLFDTDYVASI--NksGYRYHPGEPRTFMLTANV 759
                   447777799*****************************5433333..144799999**********97 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   3.0   1.3e-22   1.2e-18       3     107 ..      69     168 ..      67     169 .. 0.95
   2 ?   -1.3   0.0      0.35   3.2e+03      64      93 ..     436     465 ..     395     478 .. 0.72

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 1.3e-22
                 GCCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEE...ECCCCSTTSEEEEETTB-GGCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHC CS
        Plug   3 kdtpgsvsvvtaediekqgatsladalqgvpgvnv...sssgggggassisiRGlgsnrvlvlvDGvpianggsgagdlssidpedierievlkGpasa 98 
                  dt+ +++v+ ++ i++qg+t+l+dal++vpgv +    ++g++ +++ i++RG++ +++ ++vDG++       + +  + d+ + +++ev+kGpa +
  CTQ27643.1  69 VDTTRTITVIPEQVIKDQGVTNLTDALKNVPGVGAfyaGENGSSTTGDAIFMRGVD-TSNSIYVDGIR-------DIGSVTRDTFNTQQVEVIKGPAGT 159
                 68999******************************99999999999*********6.99********8.......999999****************** PP

                 TTSSTGSSE CS
        Plug  99 lyGsdaigG 107
                  yG++a+ G
  CTQ27643.1 160 DYGRSAPSG 168
                 ******999 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.35
                 TTEEESCCCCSCTCGCSSB.GGGEEEEEEEE CS
        Plug  64 DGvpianggsgagdlssid.pedierievlk 93 
                 +G+++ ng+ + ++++ +d + + erie+  
  CTQ27643.1 436 NGANA-NGQTDTFGIYAFDtLTLTERIEING 465
                 55553.3455666777776347888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 5309.85
//
Query:       CTQ27644.1  [L=235]
Description: Short-chain dehydrogenase/reductase SDR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-21   74.9   0.0    6.7e-21   74.6   0.0    1.0  1  adh_short      short chain dehydrogenase
    1.3e-19   70.7   0.0    1.6e-19   70.4   0.0    1.0  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    0.00047   19.7   0.0    0.00099   18.6   0.0    1.7  1  Epimerase      NAD dependent epimerase/dehydratase family
     0.0058   16.6   0.0     0.0076   16.2   0.0    1.2  1  KR             KR domain
  ------ inclusion threshold ------
      0.074   12.4   0.0       0.11   11.9   0.0    1.2  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
       0.14   11.5   0.0        5.6    6.2   0.0    2.1  2  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.0   2.2e-24   6.7e-21       1     187 [.       7     195 ..       7     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 2.2e-24
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S...S--SSGGGC CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi...tgsgpfsel 96 
                 +++l++Gas+G+G+a+a ++++ G++v+ + r  +    +++  k +  ++  +++D++d++++ al ++      +ld+L  NAG      s+ + ++
  CTQ27644.1   7 NTILIVGASRGLGHAMAATFLQHGWEVIGTVRDLSSHTPLHDLAKTHPLRLRLATLDIRDEAQLAALQATL--PPASLDMLFVNAGTtnrDPSQIIGDV 103
                 589**************************998888776777777777999**************9998888..6689**********666566677899 PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-T...TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHH CS
   adh_short  97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpva...gvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdma 187
                 s ee+ +v+ +N  +++ +++ + +a   + +G    +sS +g   ++   +   Y  sKaa+++++rs+a   ++ +   +++aPG ++T++ 
  CTQ27644.1 104 STEEFYQVMLTNALAPMRVIERLQQA--VKPQGLLGVMSSGQGSLTNNltgQRELYRGSKAALNMFMRSFAARPSSASHPLVVMAPGWIRTELG 195
                 **********************8888..36*************655441115689*****************99999999***********985 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0   5.4e-23   1.6e-19       1     179 [.      13     195 ..      13     210 .. 0.91

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 5.4e-23
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG.CSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapk.lkgpfletsree 94 
                   Ga +g+G+a+A ++ ++G+ev+ t ++ +++  +++la+ ++ ++    +D++de+q++al +++     +lD+l+ nag +++  ++ + ++s ee
    CTQ27644.1  13 GASRGLGHAMAATFLQHGWEVIGTVRDLSSHTPLHDLAKTHPLRLrlATLDIRDEAQLAALQATLPPA--SLDMLFVNAGTTNRdPSQIIGDVSTEE 107
                   999*************************************9988445**************9999876..8*************9999999****** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSB...STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGG CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeggsivnlssvgaerv...vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaa 179
                   f +++ +n+ + +++++++++++k++g +  +ss +++ +   + + + y  +Kaal+ ++r++A+   +      + +pg+i+T++ 
    CTQ27644.1 108 FYQVMLTNALAPMRVIERLQQAVKPQGLLGVMSSGQGSLTnnlTGQRELYRGSKAALNMFMRSFAARPSSASHPLVVMAPGWIRTELG 195
                   ***************************999999987766533244555*************************************984 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.3e-07   0.00099       1      62 [.       9      76 ..       9     177 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.3e-07
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl......elveldltdrsalerlfke 62
                il++Ga+  +G a++  +l++g+evig  r+ s++   ++  +      +l +ld++d+++l++l ++
  CTQ27644.1  9 ILIVGASRGLGHAMAATFLQHGWEVIGTVRDLSSHTPLHDLAKthplrlRLATLDIRDEAQLAALQAT 76
                89*************************999966666554443379***************87776554 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.6e-06    0.0076       2     165 ..       8     177 ..       7     191 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.6e-06
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------...--- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr...dkl 96 
                 t li+G+  gLG ++a + +++g + +  + R+     +s++ ++ l+++   + +++ +D+ d+++++al +++    +++   +  Ag+++    + 
  CTQ27644.1   8 TILIVGASRGLGHAMAATFLQHGWEVI-GTVRD-L---SSHTPLHDLAKThPLRLRLATLDIRDEAQLAALQATLP--PASLDMLFVNAGTTNrdpSQI 99 
                 689********************8755.55677.2...223344555444389******************99998..567999999999998444467 PP

                 TTT--HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--T..T-HH.H....HHHHHHHHHHHHHHHH CS
          KR  97 leemtaedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsa..gqan.Y....aaaNaflDalaeyrrs 165
                 + ++++e++ qv+     +   + e l++  ++  ++ ++SS  g l ++  gq + Y    aa N f+ ++a+  +s
  CTQ27644.1 100 IGDVSTEEFYQVMLTNALAPMRVIERLQQavKPQGLLGVMSSGQGSLTNNltGQRElYrgskAALNMFMRSFAARPSS 177
                 889999999999877666555555555544667788888888887766642233222311115556666666555554 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.5e-05      0.11       4      71 ..      13      74 ..      10      81 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.5e-05
                   TTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHH CS
  GDP_Man_Dehyd  4 GiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerll 71
                   G +   G  +a  +l+ g ev+g+vr+ ss   + ++ lak    +   +l+l   D++D+++l  l 
     CTQ27644.1 13 GASRGLGHAMAATFLQHGWEVIGTVRDLSSH--TPLHDLAKT---H-PLRLRLATLDIRDEAQLAALQ 74
                   555557999****************988774..467777653...2.359************998875 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0019       5.6      37      64 ..       7      34 ..       2      53 .. 0.75
   2 ?    3.1   0.0     0.017        51     104     131 ..      86     113 ..      81     132 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0019
                   -EEEEE---TTTHHHHHHHHHCTT-EEE CS
  THF_DHG_CYH_C 37 kkvvvvGrsnivgkplallLleknatVt 64
                   +++++vG+s+ +g+++a+ +l+++  V 
     CTQ27644.1  7 NTILIVGASRGLGHAMAATFLQHGWEVI 34
                   6799****************99954443 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.017
                    EEE---EEC-TTEEE-SB-HHHHCTTSS CS
  THF_DHG_CYH_C 104 viDvGinrvekgklvGDvdfeevkevas 131
                     ++ G+++ + ++++GDv++ee  +v+ 
     CTQ27644.1  86 FVNAGTTNRDPSQIIGDVSTEEFYQVML 113
                    578898888899**********999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1811.30
//
Query:       CTQ27645.1  [L=90]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 728.66
//
Query:       CTQ27646.1  [L=315]
Description: putative dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00029   20.8   0.4    0.00054   19.9   0.3    1.5  1  ADH_zinc_N  Zinc-binding dehydrogenase
     0.0034   17.5   0.0      0.006   16.7   0.0    1.3  1  DapB_N      Dihydrodipicolinate reductase, N-terminus
  ------ inclusion threshold ------
      0.043   13.5   0.0      0.067   12.9   0.0    1.2  1  MAF_flag10  Protein of unknown function DUF115


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.3   9.1e-08   0.00054       3      67 ..     145     208 ..     144     261 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 9.1e-08
                 HHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEET.TTC..HHHHHHHHHTTTSSEEEEEESSC CS
  ADH_zinc_N   3 GlaavqlAkalGa.eviavdsseeklelakklGadeviny.kea..dlverikeltggegvdvvfecvG 67 
                 G++avq+A+ lGa ++ia+ ++++    ++ l ade+i     +  +l+ +  +     ++dvv++++ 
  CTQ27646.1 145 GQLAVQIARYLGAkKIIATGRNAQ---SLAALDADECIQLtA-DdkTLSGQFSAVS-AAQIDVVIDYLW 208
                 99*******************996...78999******9952.2225888887777.789*****9875 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     1e-06     0.006       3      74 ..     135     206 ..     134     224 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1e-06
                 EEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSSHHHHHHH.-SEEEE- CS
      DapB_N   3 vavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevlek.advliDF 74 
                 v+++Ga+G  G+  v+ ++   +++   a  r+ ++l + da e ++l+  + +++ ++++v ++  dv+iD+
  CTQ27646.1 135 VLINGATGSAGQLAVQIARY-LGAKKIIATGRNAQSLAALDADECIQLTADDKTLSGQFSAVSAAqIDVVIDY 206
                 89**************9998.666666677888889**************************9999******8 PP

>> MAF_flag10  Protein of unknown function DUF115
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.1e-05     0.067     131     163 ..     131     164 ..     109     168 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
  MAF_flag10 131 eekne.ilfgGgsvantaldlAvklgfkeIiliG 163
                   +++ i++  gs +++a+++A++lg+k+Ii  G
  CTQ27646.1 131 AGETVlINGATGSAGQLAVQIARYLGAKKIIATG 164
                 3334478999*********************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2560.71
//
Query:       CTQ27647.1  [L=58]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       167  (0.00931452); expected 358.6 (0.02)
Passed bias filter:                      139  (0.0077528); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 497.61
//
Query:       CTQ27648.1  [L=160]
Description: putative bacterial regulatory protein, MarR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-11   43.1   0.1    4.9e-11   42.3   0.1    1.4  1  MarR_2          MarR family
    3.5e-09   36.4   0.0    5.5e-09   35.8   0.0    1.3  1  MarR            MarR family
    7.7e-05   23.1   0.0    0.00014   22.3   0.0    1.4  1  HTH_27          Winged helix DNA-binding domain
    9.6e-05   22.2   0.0    0.00016   21.5   0.0    1.4  1  TrmB            Sugar-specific transcriptional regulator TrmB
    0.00029   20.3   0.0    0.00084   18.9   0.0    1.7  1  HTH_24          Winged helix-turn-helix DNA-binding
    0.00068   19.6   0.1     0.0029   17.6   0.0    2.0  2  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.001   19.0   0.1     0.0024   17.8   0.0    1.6  1  HTH_29          Winged helix-turn helix
     0.0017   18.5   0.0     0.0035   17.5   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0021   18.0   0.0     0.0039   17.1   0.0    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0021   17.9   0.0     0.0079   16.1   0.0    1.9  2  HTH_11          HTH domain
     0.0026   17.4   0.0     0.0049   16.5   0.0    1.5  1  Crp             Bacterial regulatory proteins, crp family
     0.0031   17.6   0.1     0.0076   16.4   0.0    1.6  2  HTH_28          Helix-turn-helix domain
     0.0063   16.3   1.4      0.014   15.2   0.0    2.2  3  HTH_IclR        IclR helix-turn-helix domain
     0.0098   15.6   0.0      0.017   14.9   0.0    1.4  1  HTH_38          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.027   14.4   0.0    1.5  1  HTH_5           Bacterial regulatory protein, arsR family
      0.046   13.5   0.1       0.16   11.8   0.0    1.9  2  HTH_23          Homeodomain-like domain
       0.07   13.2   0.0       0.15   12.1   0.0    1.5  1  HTH_20          Helix-turn-helix domain
      0.093   12.5   0.0       0.28   11.0   0.0    1.8  2  HTH_DeoR        DeoR-like helix-turn-helix domain
        0.1   12.6   0.0       0.17   11.9   0.0    1.3  1  HTH_36          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.1   5.2e-14   4.9e-11       8      61 ..      46      97 ..      40      98 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 5.2e-14
                HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61
                + +L a+gr+++  + v ela++lg +  +vsr +k+L+a+GL  ++p+ +D+R
  CTQ27648.1 46 FPLLVAVGRHGP--VGVVELADHLGRDYTTVSRQVKKLEAQGLACKQPNRHDRR 97
                679*********..***************************************9 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   5.8e-12   5.5e-09       6      58 ..      46      98 ..      41      99 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 5.8e-12
                HHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR  6 fviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58
                f +L+ + ++gp  v eLa++lg + +tv+r++++Le +Gl  ++++  DrR+
  CTQ27648.1 46 FPLLVAVGRHGPVGVVELADHLGRDYTTVSRQVKKLEAQGLACKQPNRHDRRI 98
                66899999********************************************7 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.5e-07   0.00014      10      68 .]      50     107 ..      41     107 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.5e-07
      HTH_27  10 hlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                   + +r++++   +l++ l ++++++s  +kkL+++GL  +++ ++drr + v+l+++G
  CTQ27648.1  50 VAV-GRHGPVGVVELADHLGRDYTTVSRQVKKLEAQGLACKQPNRHDRRISEVTLSASG 107
                 334.589999999**************************************99999988 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.7e-07   0.00016      17      58 ..      49      93 ..      34     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.7e-07
                HH...HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 17 Ll...klgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                L+   ++gp  + e+a +lg+++++v + +++Le  Gl  +++ r
  CTQ27648.1 49 LVavgRHGPVGVVELADHLGRDYTTVSRQVKKLEAQGLACKQPNR 93
                4455689*******************************9998766 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   8.9e-07   0.00084      21      46 ..      61      86 ..      49      86 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 8.9e-07
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGl 46
                 eLA++lg   +tv+r++k+Le +Gl
  CTQ27648.1 61 VELADHLGRDYTTVSRQVKKLEAQGL 86
                79*********************996 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.1e-06    0.0029      26      52 ..      62      88 ..      54     105 .. 0.86
   2 ?   -0.4   0.0       1.3   1.2e+03      17      45 ..     100     129 ..      87     143 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.1e-06
                HHHHHTTSSHHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2 26 elAsmlGltretvsrilseLkreglis 52
                elA++lG    tvsr  ++L+ +gl  
  CTQ27648.1 62 ELADHLGRDYTTVSRQVKKLEAQGLAC 88
                8***********************965 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.3
                 EEEEEHHHHHHHHHTT.SSHHHHHHHHHHH CS
   HTH_Crp_2  17 eielpltqeelAsmlG.ltretvsrilseL 45 
                 e++l+ + +++ + +  ++r  ++++l+++
  CTQ27648.1 100 EVTLSASGQQMIDSIAvARRRLMNQVLAQW 129
                 566666666666666623333445666655 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.6e-06    0.0024      13      56 ..      59     102 ..      54     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.6e-06
      HTH_29  13 stvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn.r 56 
                 + v ++A  lg +++tv r +k  e+ Gla+ +++r  +r ++  
  CTQ27648.1  59 G-VVELADHLGRDYTTVSRQVKKLEAQGLACKQPNRHDRRISEvT 102
                 5.899**************************99955567766655 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.7e-06    0.0035      19      59 ..      54      94 ..      41      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.7e-06
                    HHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTE CS
  Fe_dep_repress 19 ekkvvktkdlaerLnvspssVsemlkkLekdGyveyekykg 59
                     +++v++ +la  L+    +Vs  +kkLe +G+   ++ ++
      CTQ27648.1 54 RHGPVGVVELADHLGRDYTTVSRQVKKLEAQGLACKQPNRH 94
                    6899*****************************99999887 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.1e-06    0.0039       6      40 ..      48      84 ..      44     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.1e-06
                HHHHHHHHS..SHHHHHHHHTS-HHHHHHHHHHHHHH CS
       HTH_1  6 lfvavaeeg..sftrAAeeLglsqpavsrqikrLEee 40
                l+vav ++g   + + A++Lg  + +vsrq+k+LE++
  CTQ27648.1 48 LLVAVGRHGpvGVVELADHLGRDYTTVSRQVKKLEAQ 84
                7889999997777788*******************85 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.3     5e+03      37      47 ..      32      42 ..      29      43 .. 0.69
   2 !   16.1   0.0   8.3e-06    0.0079      15      43 ..      57      85 ..      52      90 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.3
      HTH_11 37 kaLeelgvpIe 47
                ++L+++g+++e
  CTQ27648.1 32 QILQAAGIQLE 42
                67888887765 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 8.3e-06
      HTH_11 15 pisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                p+   eLA++L++  +tv r +k+Le++g
  CTQ27648.1 57 PVGVVELADHLGRDYTTVSRQVKKLEAQG 85
                566669*********************99 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.2e-06    0.0049       7      31 ..      62      86 ..      57      86 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.2e-06
                HHHHHHTS-HHHHHHHHHHHHHTTS CS
         Crp  7 dIAdylGlTrETVSRlLtrLrekGL 31
                ++Ad lG    TVSR++++L+++GL
  CTQ27648.1 62 ELADHLGRDYTTVSRQVKKLEAQGL 86
                89999999999*************8 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     8e-06    0.0076      14      49 ..      59      94 ..      48      97 .. 0.85
   2 ?   -2.4   0.0       5.8   5.5e+03       3      26 ..     119     142 ..     118     147 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8e-06
      HTH_28 14 svreaArelgisrrtvyrWikryeegGiagLvprrr 49
                 v e+A +lg +++tv+r +k++e++G+a   p r 
  CTQ27648.1 59 GVVELADHLGRDYTTVSRQVKKLEAQGLACKQPNRH 94
                6789*************************9999764 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.8
      HTH_28   3 leiikllaaGhsvreaArelgisr 26 
                 ++ + +++a+ + +e+ +++ ++r
  CTQ27648.1 119 RRLMNQVLAQWPEDEVQALFRLTR 142
                 556666666666677777777777 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       2.1     2e+03       7      30 ..      16      39 ..      16      40 .. 0.81
   2 !   15.2   0.0   1.5e-05     0.014       8      48 ..      48      87 ..      45      91 .. 0.88
   3 ?   -2.5   0.1       4.9   4.7e+03       9      25 ..     111     127 ..     109     128 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.1
                HHHCT-CTTBSS-BHHHHHHHHTS CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtgl 30
                a+Ld+++  +q+l+  ++ +++g+
  CTQ27648.1 16 ALLDIISVMNQPLRDEQILQAAGI 39
                589999999999988888888775 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.5e-05
                HHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR  8 iLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyv 48
                +L a++++++ +++ elA+++g   +tv+R ++ L+ +G+ 
  CTQ27648.1 48 LLVAVGRHGP-VGVVELADHLGRDYTTVSRQVKKLEAQGLA 87
                5677778877.7***************************96 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4.9
                 HCT-CTTBSS-BHHHHH CS
    HTH_IclR   9 LdalaeapqeltlselA 25 
                 +d +a a+++l ++ lA
  CTQ27648.1 111 IDSIAVARRRLMNQVLA 127
                 67788888888877777 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.8e-05     0.017      22      42 ..      59      79 ..      54      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.8e-05
      HTH_38 22 slreIArrLgrspsTIsRElk 42
                ++ e A +Lgr+ +T+sR +k
  CTQ27648.1 59 GVVELADHLGRDYTTVSRQVK 79
                57799*************998 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.8e-05     0.027      17      45 ..      59      87 ..      48      89 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.8e-05
                EHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5 17 cvcelaeelglsqstvShHLkkLreaGLV 45
                 v ela++lg    tvS++ kkL+ +GL 
  CTQ27648.1 59 GVVELADHLGRDYTTVSRQVKKLEAQGLA 87
                5789***********************95 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00017      0.16      22      47 ..      62      87 ..      59      90 .. 0.89
   2 ?   -1.4   0.0       2.4   2.2e+03      11      32 ..     122     143 ..     115     150 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
      HTH_23 22 eIAreLgvsrrTvyrwlkryreeGle 47
                e A++Lg+ + Tv+r +k+ ++ Gl+
  CTQ27648.1 62 ELADHLGRDYTTVSRQVKKLEAQGLA 87
                78*****************9879997 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.4
      HTH_23  11 llllaeGlsvreIAreLgvsrr 32 
                 +  ++  ++  e+ +++  +r 
  CTQ27648.1 122 MNQVLAQWPEDEVQALFRLTRK 143
                 4445557888888888887775 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00016      0.15      20      53 ..      53      86 ..      39      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
                STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTT CS
      HTH_20 20 araegltaselaerldlskntlsyHLrvLeeagL 53
                 r +++ + ela+ l+ + +t+s+++++Le  gL
  CTQ27648.1 53 GRHGPVGVVELADHLGRDYTTVSRQVKKLEAQGL 86
                667777888******999999*********9998 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.9   6.5e+03       1       7 [.      29      35 ..      29      39 .. 0.70
   2 ?   11.0   0.0   0.00029      0.28       8      46 ..      51      89 ..      47      95 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.9
    HTH_DeoR  1 Rieqile 7 
                R+eqil+
  CTQ27648.1 29 RDEQILQ 35
                6777776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00029
    HTH_DeoR  8 llkqqgklsveelvellgvSeaTiRRDLneLeeqglltR 46
                 + ++g + v el+++lg   +T+ R  ++Le+qgl  +
  CTQ27648.1 51 AVGRHGPVGVVELADHLGRDYTTVSRQVKKLEAQGLACK 89
                57789******************************9765 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00018      0.17      31      54 ..      63      86 ..      59      87 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
      HTH_36 31 lakrlglsknTvsraikeLeqlGy 54
                la +lg +  Tvsr +k+Le  G+
  CTQ27648.1 63 LADHLGRDYTTVSRQVKKLEAQGL 86
                99******************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1324.05
//
Query:       CTQ27649.1  [L=269]
Description: tryptophan synthase, alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-99  330.4   0.0    5.6e-99  330.2   0.0    1.0  1  Trp_syntA     Tryptophan synthase alpha chain
  ------ inclusion threshold ------
      0.023   14.1   0.0      0.052   13.0   0.0    1.5  2  His_biosynth  Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> Trp_syntA  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.2   0.0  6.2e-103   5.6e-99       1     258 [.       8     266 ..       8     267 .. 0.99

  Alignments for each domain:
  == domain 1  score: 330.2 bits;  conditional E-value: 6.2e-103
                 HHHHHCTTB-EEEEEEETTSS-HHHHHHHHHHHHHCT-SSEEEE---S--TTS-HHHHHHHHCCCCTT--HHHHHHHHHHHHHHCSSS-EEEEE-CHHH CS
   Trp_syntA   1 faklkaenraafvpyvtagdpdleqsleilkalekagadviElGlpfsdPladGPvIqaanlraLakgvtlekvlelveevrkkevevPivlltylnlv 99 
                 fa+lk+++++afvp+vt+gdp  eqsl+i++al ++gad++ElG+pfsdPladGP+Iq a+lra+a+gvt+++++e+++++r+k++++Pi ll+y+nlv
  CTQ27649.1   8 FAQLKNRQEGAFVPFVTLGDPGPEQSLKIIDALIEGGADALELGIPFSDPLADGPTIQGAALRAFAAGVTPAQCFEMLAAIRQKHPTIPIGLLMYANLV 106
                 89************************************************************************************************* PP

                 CCC-HHHHCHHHHHCTEEEEEETTSBCCCHHHHHHHHHHTT-EEEEEE-TTS-HHHHHHHHHH--S-EEEESTTC-SSTTSSB-TTHHHHHHHHHHCTS CS
   Trp_syntA 100 lsygeerflaelkeagvdglivpDlPleeaeelveaakkkglelvflvapttsderlkevveqaegfvYvvsraGvTgaenavaaevdelverlkklta 198
                 +s g+++f+a+++ +gvd+++v+D+P+ee++++++aa +++++++f+++p+++d+ l+++++ ++g++Y++sraGvTgaen++a  +++lve+l ++ a
  CTQ27649.1 107 FSPGIDAFYAQCARVGVDSVLVADVPVEESAPFRQAAMRHNIAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLHHLVEKLAEYHA 205
                 *************************************************************************************************** PP

                 S-EEEESSS-SHHHHHHHH.TT-SEEEE-HHHHHHHHCTTTSHHHHHHHHHHHHHHHHHCC CS
   Trp_syntA 199 vPvavGFGistkeqvkqva.kvadGvivGSalvkkieeeaeekeqalekleelarelkeaa 258
                 +P ++GFGis++eqv++++ ++a+G+i+GSa+vk+ie++ +e++++l++l++++++lk+a+
  CTQ27649.1 206 APPLQGFGISAPEQVSAAIdAGAAGAISGSAIVKIIERHLDEPQTMLDELKAFVQSLKAAT 266
                 *****************999************************************99987 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.39   3.5e+03      91     107 ..     118     134 ..     108     148 .. 0.55
   2 ?   13.0   0.0   5.8e-06     0.052      60     108 ..     192     240 ..     160     251 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.39
                   HHHCT-SEEEESHHHHH CS
  His_biosynth  91 lleagadkviigtaavk 107
                     + g+d v ++ + v+
    CTQ27649.1 118 CARVGVDSVLVADVPVE 134
                   33444555555444444 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 5.8e-06
                   HHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH- CS
  His_biosynth  60 anldlveeiaeevfipvqvGGGIrsledveelleagadkviigtaavkn 108
                     ++lve++ae   +p   G GI+  e+v ++++aga   i g+a vk 
    CTQ27649.1 192 PLHHLVEKLAEYHAAPPLQGFGISAPEQVSAAIDAGAAGAISGSAIVKI 240
                   35689****************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2218.03
//
Query:       CTQ27650.1  [L=397]
Description: tryptophan synthase, beta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-49  167.6   0.4    4.7e-49  167.4   0.4    1.1  1  PALP      Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
       0.12   12.0   0.0       0.23   11.2   0.0    1.4  1  Mic1      Colon cancer-associated protein Mic1-like


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.4   0.4   5.2e-53   4.7e-49       3     291 ..      52     375 ..      50     378 .. 0.86

  Alignments for each domain:
  == domain 1  score: 167.4 bits;  conditional E-value: 5.2e-53
                 GCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHH.HHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-...HHHHHHH CS
        PALP   3 lgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgae.yllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadas...pekvall 97 
                 ++ +pT l ++++l++ + + l+lK+E+l ++g++K++ +   +l++ + g +++ ++e+++G+hg+a A+a+allGlk++i++ a++    + +v ++
  CTQ27650.1  52 YAGRPTALTKCRNLTEGTRTTLYLKREDLLHGGAHKTNQVLgQALLAKRMG-KTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVerqSPNVFRM 149
                 5789*************************************5555555666.99999999*****************************5555****** PP

                 HHTT-EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTT.........SHHHHHH.HHTHHHHHH....HHTTTTEEEEEEE-SSSHHHHHHHHHHHHHS CS
        PALP  98 rllGaevvevggdydeavaaaaelaaegegaylvsqfd.........nptvieg.ygtiglEil....eqlggkpdavvvpvGgGgliaGiaaglkerr 182
                 rl+Gaev+ v+++  + ++a++e+++++ g y   ++           pt++   +  ig E +    e+ g+ pdav+++vGgG+++ G+ a + e  
  CTQ27650.1 150 RLMGAEVIPVHSGSATLKDACNEALRDWSGSYEKAHYMlgtaagphpFPTIVREfQRMIGEETKaqilEKEGRLPDAVIACVGGGSNAIGMFADFIE-E 247
                 ***************************9999988888888778775545577777********866667777************************8.7 PP

                 TT-EEEEEEEC....TTCGGTTCCS..S.SS..B................SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB- CS
        PALP 183 pdvrvigvepe....gsdalarslragrrvtvpvs...............dtiadglavgspselafelldrlvdeivtvsdeealeamrllarregiv 262
                 ++v +igvep+    +s   ++ l++gr+  +  +                +i  gl+ +s+++++  l      ++v+++d+eal+a + l r+egi+
  CTQ27650.1 248 TNVGLIGVEPAghgiESGEHGAPLKHGRVGIYFGMkspmmqtadgqieesYSISAGLDFPSVGPQHAFLNSTGRADYVSITDDEALDAFKALSRHEGII 346
                 78*********77554555555558888877777788999999999998899999999998888888888888889*********************** PP

                 B-HHHHHHHHHHHHHHHHCCTTC.EEEEEE CS
        PALP 263 vepssaaalaalklreagelkeg.drvvvi 291
                 +   s +ala + l++ +e +e+ +  vv 
  CTQ27650.1 347 PALESSHALAHA-LKMMRENPEKeQLLVVN 375
                 ***999999999.77777777772444444 PP

>> Mic1  Colon cancer-associated protein Mic1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.5e-05      0.23      76     116 ..     331     371 ..     315     395 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.5e-05
        Mic1  76 lalDmLkrlkaneeivevLLskgqvleAlrfirkakevesv 116
                  alD +k l+ +e i+  L s + + +Al+++r++ e e++
  CTQ27650.1 331 EALDAFKALSRHEGIIPALESSHALAHALKMMRENPEKEQL 371
                 69********************************9966654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2909.54
//
Query:       CTQ27651.1  [L=452]
Description: fused indole-3-glycerolphosphate synthetase; N-(5-phosphoribosyl)anthranilate isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-97  326.3   0.2    1.7e-97  325.6   0.0    1.4  2  IGPS       Indole-3-glycerol phosphate synthase
    7.4e-61  205.3   0.0    1.1e-60  204.7   0.0    1.3  1  PRAI       N-(5'phosphoribosyl)anthranilate (PRA) isomerase
  ------ inclusion threshold ------
      0.059   13.1   0.1       0.14   11.9   0.1    1.6  1  QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal


Domain annotation for each model (and alignments):
>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.6   0.0  2.8e-101   1.7e-97       1     253 [.       5     251 ..       5     252 .. 0.99
   2 ?   -3.4   0.0       0.7   4.2e+03     127     160 ..     296     329 ..     293     339 .. 0.80

  Alignments for each domain:
  == domain 1  score: 325.6 bits;  conditional E-value: 2.8e-101
                 HHHCHHHHHHHHHHHHCCS-GGCCCCG..-SS-SS-HHHHCHCHTTS-EEEEEE-SEETTTEESBSS--HHHHHHHHTTT.-SEEEEE--CCCC---CC CS
        IGPS   1 lekivaekkeevaeakkrqsladleaavklakpkrsfaeaLresekklaliaEvKkaSPskgliredfdpaeiAkkyeeagAsaiSVLteekyFqGsle 99 
                 l+kiva+k+++v+++k++q+la++++++   + +r+f++aL+   +++a+i+E+KkaSPskgliredfdpa+iA+ y+++ AsaiSVL++ekyFqGs++
  CTQ27651.1   5 LAKIVADKAIWVEARKQQQPLASFQNEI--VPTQRNFYDALAG--TRTAFILECKKASPSKGLIREDFDPAAIASIYKHY-ASAISVLCDEKYFQGSFD 98 
                 689***********************85..9************..99*********************************.****************** PP

                 HHHHHHHH-SS-EEEES---SHHHHHHHHHCT-SEEEEECCCS-HHHHHHHHHHHCCTT-EEEEEESSHHHHHHHHHTT-SEEEEESEETTTTEE-CHH CS
        IGPS 100 dLrevrqavslpvlrKdFiideyqieearalgadaiLLivkvledeeleelaeaakslglevLvEvhdeeeleralklgakiiGvNnRnLktlevdlnt 198
                 +L+ v+q   +p+l+KdF id+yqi+ ar+++ada+LL+++vl+de++++l+++a+sl+++vL+Ev++eeelera++l+ak++G+NnR+L+++++dln+
  CTQ27651.1  99 FLPIVSQVAPQPILCKDFTIDPYQIYLARYYQADACLLMLSVLDDEQYRQLSAVAHSLNMGVLTEVSNEEELERAIALKAKVVGINNRDLRDMSIDLNR 197
                 *************************************************************************************************** PP

                 HHHHCHCC-TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTHHHHHHH CS
        IGPS 199 teeLaklvpkdvllvaeSGiktredveklkeegvnafLvGeslmrqedvekaire 253
                 t++La+ +  dv++++eSGi+t ++v++l++  +n+fL+G++lm+q+d+e a+++
  CTQ27651.1 198 TRQLAARLGPDVTVISESGIHTYAEVRELSHF-ANGFLIGSALMEQADLETAVKR 251
                 ********************************.******************9987 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.7
                 HHHCT-SEEEEECCCS-HHHHHHHHHHHCCTT-E CS
        IGPS 127 aralgadaiLLivkvledeeleelaeaakslgle 160
                 a+a+ a a L  v v+ ++ l+e+++ a+ lgl 
  CTQ27651.1 296 AKAVIAAAPLQYVGVFRNAPLKEVVARAQALGLA 329
                 6777777778888899999999999999999986 PP

>> PRAI  N-(5'phosphoribosyl)anthranilate (PRA) isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.7   0.0   1.9e-64   1.1e-60       1     193 [.     257     447 ..     257     448 .. 0.99

  Alignments for each domain:
  == domain 1  score: 204.7 bits;  conditional E-value: 1.9e-64
                 TCE----SHHHHHHHHHHTSSEEEEE--TTBTTB--HHHHHHHCCCS--EEEEEESSS-HHHHHHHHHHCTECEEEE-CGG.-HHHHHHHHHHS-TTSE CS
        PRAI   1 akicgltrasdvkaavkagadelglifaesskrevseeqaqellekvpaklVGVfvNqpieevlriaqelgldvvQLHGdedeqeyeellktelpvika 99 
                 +k+cgltr++d++ a ++ga+++glif+++s+r+v++ qa++++ ++p+++VGVf+N+p++ev++ aq lgl +vQLHGde +q+y+++l+ +l  + +
  CTQ27651.1 257 NKVCGLTRPQDAQVAWESGAIYGGLIFVPTSPRAVNDAQAKAVIAAAPLQYVGVFRNAPLKEVVARAQALGLAAVQLHGDE-DQAYIDALRDALADNVR 354
                 69*******************************************************************************.***************** PP

                 EEEEEE-SSS--S-SSTT-SEEEEESSS-SSSXXXXGGGGTTSXX.TTEEEESSXXTTTHHHHHT.TXXSEEEEXGGGEEE.TEEXHHHHHHHHH CS
        PRAI 100 lkvaesvdevkearradhvdllllDsgaGGtGelldwsliskllkslkviLAGGLtpeNvaeaiklegvlgvDvssGVEtn.GvkDlekirkfvq 193
                 +++a sv e+ +ar  +hvd++llD+g+GG+G+++dwsl+++++  ++v+LAGGL ++N++ea+k +g++g+D++sGVE++ G+kD+ k+++++q
  CTQ27651.1 355 IWKALSVGETFPARTLHHVDKYLLDNGQGGSGQRFDWSLLQGQDL-RNVMLAGGLGADNCVEAAK-SGCAGLDFNSGVESQpGIKDASKLASVFQ 447
                 ********************************************8.*******************.***************************98 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.3e-05      0.14      76     148 ..     152     230 ..     141     246 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.3e-05
                 HHTTTSE..EEEEESSHHHHHHHHHHT-SEEEEES--HHHHHHHHHHHHHHSTT.....SEEEEESS--TTTHHHHHCTT CS
   QRPTase_C  76 avdkevk..ievevesleeleevleaeadiimLDnfsveelkkaveelkeknkr.....vlievSGgvtlenveeyaksg 148
                 ++ + ++  +  ev+++eele++++ +a ++ + n +  ++   ++++++ + r      +i+ SG  t  +v+e+ +  
  CTQ27651.1 152 VA-HSLNmgVLTEVSNEEELERAIALKAKVVGINNRDLRDMSIDLNRTRQLAARlgpdvTVISESGIHTYAEVRELSHFA 230
                 44.233335999************************99999988888888877777776677778877888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3244.88
//
Query:       CTQ27652.1  [L=531]
Description: fused glutamine amidotransferase (component II) of anthranilate synthase; anthranilate phosphoribosyl transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.4e-101  337.0   0.2   1.2e-100  336.3   0.2    1.4  1  Glycos_transf_3  Glycosyl transferase family, a/b domain
    4.9e-44  150.4   0.0    8.7e-44  149.6   0.0    1.4  1  GATase           Glutamine amidotransferase class-I
    5.3e-17   61.4   0.6      3e-15   55.8   0.1    2.6  2  Glycos_trans_3N  Glycosyl transferase family, helical bundle 
    4.1e-06   26.7   0.2    1.4e-05   25.0   0.2    1.9  1  Peptidase_C26    Peptidase C26
  ------ inclusion threshold ------
      0.061   13.3   0.0       0.14   12.1   0.0    1.6  1  Glyco_transf_4   Glycosyltransferase Family 4
      0.077   13.1   6.4       0.21   11.8   0.8    2.5  2  Phage_TAC_11     Phage tail tube protein, GTA-gp10


Domain annotation for each model (and alignments):
>> Glycos_transf_3  Glycosyl transferase family, a/b domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.3   0.2  4.1e-104  1.2e-100       4     253 .]     273     521 ..     270     521 .. 0.99

  Alignments for each domain:
  == domain 1  score: 336.3 bits;  conditional E-value: 4.1e-104
                      BEEEEESS-SSSTHHHHHHHHHHHHHHTT-BEEEEE-STCTTCS-HHHHHCTST--ST--HHHHHHHHHHHSEEEEEHHSSSSHHHHHHHHHHH CS
  Glycos_transf_3   4 lvDivgTGGdgantfNiStaaaivvAaaGvkvakhgnrsvssksGsaDvLealgvnleltpeeveklleevgvgflfapeyhkamkhvapvrre 97 
                      ++DivgTGGdg+n++NiSta+a+v+Aa+G+kvakhgnrsvssksGs+D+L a+g+nl++++++ + +l+e gv+flfap+yh++++h++pvr++
       CTQ27652.1 273 FADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRAALDELGVCFLFAPKYHTGFRHAMPVRQQ 366
                      78******************************************************************************************** PP

                      HTT.-SSHHHCHHHHHT..SEEEEHHHHHHHHTCHSEEEEEEEESTTSSCCSTSHHHHHHHHHHHHHHHHTTEEEEEEEEEGSSTSSSEEESHH CS
  Glycos_transf_3  98 lgirTvfnlLGPLinparvkkqllgvyskelaeklaevlkelgveralvvhgdGldevsllakttvaelkdgeiteytlepedfglkraeleal 191
                      l++rT+fn+LGPLinpa++  +l+gvys+el+ ++ae+l+ lg +ra+vvh+ G+devsl+a t vael++gei++y+l++ dfgl+ +++ +l
       CTQ27652.1 367 LKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTVVAELHNGEIKSYQLTADDFGLTPYHQAQL 460
                      ********************************************************************************************** PP

                      HHSSHHHHHHHHTTHHTSCHHHHHHHHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHTSHHH CS
  Glycos_transf_3 192 eggepkenaeilkavlegkksaakrdlvllnagaalvlagkadslkegvakaeevidsGkAl 253
                      +gg+p+en +il+++l+gk +aa+  +v++n+++++ l+g +++lk++++++++v++sG+A+
       CTQ27652.1 461 AGGTPEENRDILTRLLQGKGEAAHEAAVAANVAMLMRLHG-HEDLKANAQQVLDVLHSGAAY 521
                      ***************************************9.9******************96 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.6   0.0   2.9e-47   8.7e-44       2     186 ..       6     186 ..       5     189 .. 0.96

  Alignments for each domain:
  == domain 1  score: 149.6 bits;  conditional E-value: 2.9e-47
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHH..THHSTSEEEEEEESSCTT.TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEEC CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeile..llknpdgilvsgGpgspg.vegkieaikearenkiPiLGICLGmQllaiefgrkvvkeke 97 
                 l+Dn ds+t+nl+++l+++g++v +++++ +a+  +e    ++   +++s+Gpg+p+ ++ ++e+++++r+ k+Pi+GICLG+Q++++++g+ v ++  
  CTQ27652.1   6 LLDNIDSFTYNLADQLRANGHNVVIYRNSVPAQALIErlGTMDNPVLMLSPGPGTPSeAGCMPELLTRMRG-KLPIIGICLGHQAIVEAYGGYVGQAG- 102
                 89*********************************99744899999*************************.**************************. PP

                 EEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHH CS
      GATase  98 kehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnf 186
                 +  hg+ + +++d++a + gl n++ ++++H+++  +    pagl++ a   ++  +m+++++ ++++g+QFHPEs++t++g++ll++ 
  CTQ27652.1 103 EILHGKASSIEHDGQAMFAGLANPLPVARYHSLVGSN---IPAGLTINANF-NG-MVMAVRHDADRVCGFQFHPESILTTQGARLLEQT 186
                 9************************************...*******7777.76.8*****************************9986 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.1     1e-18     3e-15       2      62 ..     202     262 ..     201     263 .. 0.97
   2 ?    3.3   0.0     0.025        74      14      48 ..     464     502 ..     463     506 .. 0.83

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 1e-18
                      HHHHHHHTT.---HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHH CS
  Glycos_trans_3N   2 diikklrdgeeLtaeeirfaihgilkgevtdaqiaAfLmAlrlkGetaeEiaalaeAmres 62 
                      +i++kl + e+L+++e ++++++++ gev++ q+aA L++++++Ge ++Eia++a+A++e 
       CTQ27652.1 202 PILEKLYQAETLSQQESHQLFSAVVRGEVKPEQLAAALVSMKVRGEQPQEIAGAATALLEN 262
                      79********************************************************987 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.025
                      -HHHHHHHHHHHHTTS....S-HHHHHHHHHHHHHH--- CS
  Glycos_trans_3N  14 taeeirfaihgilkge....vtdaqiaAfLmAlrlkGet 48 
                      t+ee r++++ +l+g+     + a +a  +m +rl G+ 
       CTQ27652.1 464 TPEENRDILTRLLQGKgeaaHEAAVAANVAMLMRLHGHE 502
                      899999999999999977655558889999999999975 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.2   4.7e-09   1.4e-05     102     216 .]      74     172 ..      68     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4.7e-09
  Peptidase_C26 102 lergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaikelaeelrveAvaeDgviE 197
                    ++ ++Pi+giC+G+q +  a+GG + q+ e       h       ++ +++ + + ++a l++     v+ +H+   +++  +l + A    g++ 
     CTQ27652.1  74 MRGKLPIIGICLGHQAIVEAYGGYVGQAGEI----L-H------GKASSIEHDGQAMFAGLAN--PLPVARYHSLVGSNIPAGLTINANF-NGMVM 155
                    56689*******************9998873....2.3......3345677788888988877..999******************9975.69*** PP

  Peptidase_C26 198 aieseeakafvlgvQwHPE 216
                    a+++ +++  v g Q+HPE
     CTQ27652.1 156 AVRHDADR--VCGFQFHPE 172
                    ****9955..********9 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.8e-05      0.14       7      37 ..      13      43 ..      10      78 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.8e-05
  Glyco_transf_4  7 hvleLaraLarrGheVtvvtpgddgpleeev 37
                    ++++La +L+++Gh+V+++  +++  +  e+
      CTQ27652.1 13 FTYNLADQLRANGHNVVIYRNSVPAQALIER 43
                    79*****************888888877774 PP

>> Phage_TAC_11  Phage tail tube protein, GTA-gp10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8   6.9e-05      0.21      24      95 ..     193     263 ..     176     264 .. 0.83
   2 ?    3.7   0.5     0.023        68      51      93 ..     469     516 ..     457     520 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
  Phage_TAC_11  24 eLeeelgag.lvalveRfaegr.lsardvievirlGLiGgGmeaseadalvaayvggkplaevakiaaalLaaa 95 
                   +Le+   +  l  ++e++ + + ls ++  +++ +  +G  ++++ a+alv   v+g+++ e+a +a+alL+ a
    CTQ27652.1 193 KLEH---TNtLQPILEKLYQAEtLSQQESHQLFSAVVRGEVKPEQLAAALVSMKVRGEQPQEIAGAATALLENA 263
                   3333...3336788888888866************************************************875 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.023
  Phage_TAC_11  51 ievirlGLiGgGmeaseadalvaayv.....ggkplaevakiaaalLa 93 
                   +++++  L G G++a ea+++++ ++     g ++l ++a+ + ++L+
    CTQ27652.1 469 RDILTRLLQGKGEAAHEAAVAANVAMlmrlhGHEDLKANAQQVLDVLH 516
                   567888899999999999998765541111155577777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 4055.44
//
Query:       CTQ27653.1  [L=520]
Description: component I of anthranilate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-83  280.0   0.0    2.8e-83  279.5   0.0    1.2  1  Chorismate_bind  chorismate binding enzyme
    9.1e-15   55.1   0.0    1.3e-13   51.3   0.0    2.6  2  Anth_synt_I_N    Anthranilate synthase component I, N termina
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.36   10.8   0.1    1.8  2  BPL_C            Biotin protein ligase C terminal domain
       0.13   12.4   0.1       0.47   10.6   0.0    2.0  2  Lipase_GDSL_3    GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.5   0.0   6.1e-87   2.8e-83       2     258 .]     242     502 ..     241     502 .. 0.97

  Alignments for each domain:
  == domain 1  score: 279.5 bits;  conditional E-value: 6.1e-87
                      HCHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETT.SEEEEECEEEEEEH CS
  Chorismate_bind   2 redYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsellgaSPElllkvegg.rrietepiaGTrar 94 
                      +e+Y + v+k++++irag++++vv+srr++++++   +pla+y+ l++ np+py+f+++ +d++l+gaSPE  lk ++  r+ie++piaGTr+r
       CTQ27653.1 242 DEEYGAVVRKMQRAIRAGEIFQVVPSRRFSLPCP---SPLAAYDVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDAVsRQIEIYPIAGTRPR 332
                      799*****************************77...578***********************************996579************* PP

                      SSSHH......HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCC CS
  Chorismate_bind  95 gktpe......edealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgav 182
                      g+ +        d++ e e+++d+Ke++Ehlm+vdl+rndL+++++pgs  v++l+kv+rys v+hlvs++ gel++d+++l++ +a++ +g++
       CTQ27653.1 333 GRRADgsldrdLDSRIELEMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDRYSFVMHLVSRVVGELRQDLDVLHAYRACMNMGTL 426
                      9999866666679********************************************************************************* PP

                      SEESHHHHHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 183 tGaPkkrameiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      +GaPk ram++i++ E +rRg Y+Gavgy++a+g++++++vIR+a v+++ ++++aGaGIv dS p++E +Et++K
       CTQ27653.1 427 SGAPKVRAMQLIAAAEGKRRGSYGGAVGYFTAHGDLDTCIVIRSAYVQEGIATVQAGAGIVLDSVPQSEADETRNK 502
                      *************************************************************************998 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0     3e-17   1.3e-13       3     140 ..      19     191 ..      17     193 .. 0.85
   2 ?    0.6   0.0      0.13   5.8e+02      90      99 ..     448     457 ..     388     457 .. 0.78

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 3e-17
  Anth_synt_I_N   3 ltplsvylklaeee.hkflLeSaeneggegrySfigldpflelkskngeveveg........................................pe 57 
                    ++p +++ +l + +  + lLeSa+ +++++  S++ +d +l++++ ++ v+++                                         +e
     CTQ27653.1  19 ENPTALFHQLCGARpATLLLESADIDSKDDLKSLLLVDSALRITALGDTVTIQAlsangaallelldgalpsginnqrqpngriltfpavsallDE 114
                    7899******99999**************************************9*******************99999999999998877776655 PP

  Anth_synt_I_N  58 geeleeeepldalrellerfrsaedseptelpfvgGlvGylgYDlvreieklpksakddlnlpdarlilydtlivfDhkerrl 140
                    + +l + +++da r l e +  ++d+ + e  f     G+++YDlv  +e+lp+  + d+++pd++++l +tl+v+Dh+++++
     CTQ27653.1 115 DARLCSLSVFDAFRLLQELVS-VPDN-EREAMFF---GGLFAYDLVAGFEDLPQ-LQSDTACPDYCFYLAETLLVIDHQTKHT 191
                    555555567777776666666.5444.4455464...5679************5.778899******************9987 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.13
  Anth_synt_I_N  90 fvgGlvGylg 99 
                     +gG+vGy++
     CTQ27653.1 448 SYGGAVGYFT 457
                    589*****95 PP

>> BPL_C  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1     8e-05      0.36      11      40 ..      64      91 ..      59     100 .. 0.79
   2 ?   -2.8   0.0       1.4   6.4e+03      37      46 ..     253     262 ..     244     262 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8e-05
                TSCEEEEEEEEE-TTSEEEEEETTE.EEEE CS
       BPL_C 11 edgkveGiavGIdddGaLllktddglqpdi 40
                 +++v  +++ +++ Ga ll+++dg +p++
  CTQ27653.1 64 LGDTV--TIQALSANGAALLELLDGALPSG 91
                57788..******************66654 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
                 EEEESSCCEE CS
       BPL_C  37 qpdinsGdis 46 
                 q+ i +G+i+
  CTQ27653.1 253 QRAIRAGEIF 262
                 78999***98 PP

>> Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.97   4.3e+03      77     118 ..     205     246 ..     194     264 .. 0.57
   2 ?   10.6   0.0   0.00011      0.47      50      96 ..     472     519 ..     468     520 .] 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.97
  Lipase_GDSL_3  77 rerleyfvktlrka..hPktpillvedlsttkglvdeklekeve 118
                    ++rle+ +++lr++  +P +p+ ++  +  ++ +vd+ +++e+ 
     CTQ27653.1 205 KQRLEQRLSQLRQQlnEPPAPLPVTT-VAEMRCDVDQ-SDEEYG 246
                    45666666666653225666666655.4455555555.333333 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00011
  Lipase_GDSL_3  50 eladvlaevda.svfvldllpNasaeeirerleyfvktlrkahPktpi 96 
                    ++ + +a v+a +  vld +p  +a+e r++++ +++++++ah ++ i
     CTQ27653.1 472 YVQEGIATVQAgAGIVLDSVPQSEADETRNKARAVLRAIAQAHHAKEI 519
                    6788899***97789****************************88877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 3823.89
//
Query:       CTQ27654.1  [L=287]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-07   30.8   0.1    4.5e-07   30.3   0.1    1.3  1  PHP       PHP domain


Domain annotation for each model (and alignments):
>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   2.5e-11   4.5e-07       1      74 [.      11     139 ..      11     229 .. 0.64

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 2.5e-11
                 EEEE--CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTTHHHHHHHHHHHHTTTTSEEEEEEE.................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
         PHP   1 dlHvHteyslldgalsieelvkkakelglkaiaiTDhgnlfgyvefykaakkkykagikpiiGleayvaddse.......................... 73 
                 dlH+Ht+ s  dg l+++elv +a e+   ++aiTDh+ + +++ + +++ ++    ++++ G+e++   +++                          
  CTQ27654.1  11 DLHSHTTAS--DGRLTPQELVHRAHEMRVGTLAITDHDSVAAIPVAREEI-ARAGLPLTLVNGVEISTLWENHeihivglnidiahttmtalleeqkar 106
                 678887766..667888************************999999999.455577899999997777666666777776644444444444444444 PP

                 ................................. CS
                 ................................x RF
         PHP  74 ................................k 74 
                                                  
  CTQ27654.1 107 rqqrgqmiaerlekaripgawegalrladggaV 139
                 444444444444444444333333333333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2263.79
//
Query:       CTQ27655.1  [L=206]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-46  157.8   0.0    2.4e-46  157.5   0.0    1.1  1  Sua5_yciO_yrdC  Telomere recombination
  ------ inclusion threshold ------
       0.16   11.4   0.0        0.2   11.1   0.0    1.2  1  DUF3878         Domain of unknown function, E. rectale Gene d


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.5   0.0   2.6e-50   2.4e-46       2     179 .]      23     198 ..      22     198 .. 0.95

  Alignments for each domain:
  == domain 1  score: 157.5 bits;  conditional E-value: 2.6e-50
                     HHHTTSEEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-TC--HHHHHHHHCT-SSSCEEEEE..E-TS-H.HHHT CS
  Sua5_yciO_yrdC   2 alrkGgivaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklaeseveeealkllerfwPGpitlllkrskeklpk.evap 95 
                     ++rkGg++++pt+++Y+L+c+++++ a+er+++i++ p+ +++++++++l++l+++a   v++ a++l+++ +PG +t++lk +ke +p+  +++
      CTQ27655.1  23 IVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRQLPDGHNFTLMCRDLSELSTYAF--VDNVAFRLMKNNTPGNYTFILKGTKE-VPRrLLQE 114
                     789******************************************************9..**********************9888.77736699 PP

                     TTTEEEEEE-SSHHHHHHHHHCTS-EEEEES-STTS.-S-SSHHHHHHHC-TTSECB-SS---SSS---EEEETTSSTSSECEXX CS
  Sua5_yciO_yrdC  96 glktvGvrlPdtplarlLlealgeplvaTSanlsge.psitdaeeveeelgeivdlildggeiavgvdstVvdltegkpkilRrG 179
                     ++kt+G r+P++p+a++Lle lgep+ +TS  l+g+     d+ee++++l+++vdli++gg    ++++tV+dlte++p +lR+G
      CTQ27655.1 115 KRKTIGMRVPSNPIAQALLETLGEPMLSTSLMLPGSdFTESDPEEIKDRLEKVVDLIIHGG-FLGQQPTTVIDLTEDTPVVLREG 198
                     ***********************************94456799******************.7788*****************98 PP

>> DUF3878  Domain of unknown function, E. rectale Gene description (DUF3878)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.3e-05       0.2     211     271 ..     122     182 ..      70     197 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.3e-05
     DUF3878 211 rkLkskkraklyeliykkvveasdeypqrdyGerinlkikekrkelekkllekGfvGkyPe 271
                 r   ++  ++l e++ + +   s   p  d+ e   ++ik++ +++++ +++ Gf G+ P+
  CTQ27655.1 122 RVPSNPIAQALLETLGEPMLSTSLMLPGSDFTESDPEEIKDRLEKVVDLIIHGGFLGQQPT 182
                 44456778999***********************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1712.75
//
Query:       CTQ27656.1  [L=302]
Description: Permease of the drug/metabolite transporter (DMT) superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-27   96.8  31.9    1.6e-14   54.2  13.4    2.0  2  EamA             EamA-like transporter family
  ------ inclusion threshold ------
        1.5    7.1   6.3       0.16   10.2   0.9    1.8  2  DUF2070          Predicted membrane protein (DUF2070)
        2.2    9.1   4.9        1.4    9.7   1.5    2.5  2  NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2  13.4   2.7e-18   1.6e-14       7     136 ..       9     136 ..       6     137 .. 0.93
   2 !   48.8  10.5   1.3e-16   7.5e-13       2     136 ..     149     289 ..     148     290 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 2.7e-18
        EamA   7 allaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvft 105
                 +ll a +w+++f++++i+   +  l  +f+r l+a+i+l +++ +++++     +  + + l lg++++ l fl++  a + ++a+  + +++++P++ 
  CTQ27656.1   9 LLLLAALWGASFLFMRITTPAFGALNSAFLRVLFAAIALGLLLGVQGKWS--GYQGKFTSTLHLGVINSGLPFLMYCLAAQWLPAGYSATLNATAPMMG 105
                 4778889********************************99999988888..445557888************************************** PP

        EamA 106 lilsvlllgekltlkqllgivlillGvllil 136
                 +++++l + e+ltl++  g++l+ +Gv++i 
  CTQ27656.1 106 VLIGALCFAEPLTLRKGGGAILGAIGVAVIA 136
                 ****************************986 PP

  == domain 2  score: 48.8 bits;  conditional E-value: 1.3e-16
        EamA   2 lgillallaalfwaiyfvlskillrkv...spltltfvrfliagillliiallkegklaklslkd...wllllllgllgtvlafllffyalkktsasna 94 
                  gi  +l+a+ +++++++l+++ +++    +  +++  + + a+++l+++ l++ +  +  ++++   w++++ lg+++t+++++l+f ++ ++++ + 
  CTQ27656.1 149 PGIGACLTATACYGLAGFLTRRWIQQRgglEAERVALGSQVGATLFLFPFFLWSCWHGPAVDWRQslpWIAIVMLGVVCTAAGYILYFRLIADIGPLRS 247
                 578889**************887666523366688999999999***999888877774555555555******************************* PP

        EamA  95 slitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                   +t+l+P f++++++l lge+++   +lg++l+ +++++i+
  CTQ27656.1 248 LSVTFLIPPFAALWGYLCLGETVEEGLILGALLVCVALWMII 289
                 ***************************************997 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.4     0.042   2.5e+02      16      58 ..      18      89 ..       5     121 .. 0.46
   2 ?   10.2   0.9   2.7e-05      0.16      21     172 ..     129     289 ..     117     298 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.042
     DUF2070 16 vsllliillalligllaflssk.............................lfgillfglpalvaflltlpv 58
                 s+l++ ++  ++g+l++ +                                 g++  glp+l++ l+ +++
  CTQ27656.1 18 ASFLFMRITTPAFGALNSAFLRvlfaaialglllgvqgkwsgyqgkftstlHLGVINSGLPFLMYCLAAQWL 89
                555555555555555554333321111111111112222333344433333334444444444444444433 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 2.7e-05
     DUF2070  21 iillalligllaflssk.....lfgillfglpalvaflltlpvlrilggrltykrs.lflalltelivviisllaillsall....qalvllalvlsla 109
                 +i +a+++   + ls       + + l  +  + +a++lt ++++  gg l+ +r  l   + ++l+++ ++l ++     +    +   +  ++l+++
  CTQ27656.1 129 AIGVAVIARPTSGLSAAlllpgIGACLTATACYGLAGFLTRRWIQQRGG-LEAERVaLGSQVGATLFLFPFFLWSCWHGPAVdwrqSLPWIAIVMLGVV 226
                 444444444444444436666777778888889999****999988655.6777775777777888888888888888888899755555566778899 PP

     DUF2070 110 lvfalrllvlvavsdesllkavlpaliqpllailllvlyfspesfllllllslifalavylfi 172
                  ++a  +l + +++d  +l+++ +++++p +a+l  +l ++++    l+l  l++ +a++++i
  CTQ27656.1 227 CTAAGYILYFRLIADIGPLRSLSVTFLIPPFAALWGYLCLGETVEEGLILGALLVCVALWMII 289
                 9999999999****************************9544444444444444444443333 PP

>> NADH-u_ox-rdase  NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.5   0.00023       1.4      20      65 ..       1      52 [.       1     120 [. 0.81
   2 ?   -2.0   0.1      0.98   5.9e+03      34      65 ..     195     231 ..     186     238 .. 0.47

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00023
  NADH-u_ox-rdase 20 frpsDYvkaaaitaafplallaleklsPsvagka......mtlagligflgg 65
                     +r+ DY+  + ++a + +++l+++  +P+ ++ +      +++a ++g+l g
       CTQ27656.1  1 MRVIDYGRLLLLAALWGASFLFMRITTPAFGALNsaflrvLFAAIALGLLLG 52
                     7999********************999*997666888888888888888776 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.98
  NADH-u_ox-rdase  34 afplallaleklsPsvagka......mtlagligflgg 65 
                       fp+ l+ +    P+v  ++      +++ g++ + +g
       CTQ27656.1 195 LFPFFLWSCW-HGPAVDWRQslpwiaIVMLGVVCTAAG 231
                      5666555542.235554444555444333333444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2260.17
//
Query:       CTQ27657.1  [L=298]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-40  139.1   3.0    2.2e-40  138.3   3.0    1.3  1  LysR_substrate  LysR substrate binding domain
    1.4e-19   69.8   2.0    1.7e-19   69.5   0.8    1.8  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.069   13.0   0.1       0.18   11.6   0.1    1.7  1  HTH_30          PucR C-terminal helix-turn-helix domain
      0.094   12.6   0.2       0.31   11.0   0.2    1.9  1  MarR_2          MarR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   3.0   4.8e-44   2.2e-40       7     205 ..      93     287 ..      90     290 .. 0.95

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 4.8e-44
                     EEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE.CGGG CS
  LysR_substrate   7 rLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv.sled 100
                     ++ i++++ +a ++l p+la+f +ryP++e+++ +++  + +dll eg +D+a+r+g   +++l+a +L+++ l++v+sp+  +a ++ + +++d
      CTQ27657.1  93 KVAISCTSGFAIQWLLPRLADFERRYPQIEIQIGTTN--RRVDLLSEG-IDFAVRHGVGGWPELQAYRLLDDDLMPVCSPQL-IAPRRTLtDASD 183
                     6789*********************************..*********.********************************8.67666666**** PP

                     GCTSEEEEESTTSTHHHHHHHHHHCTTEEC...EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESST.TCEEEEEEEEETTC CS
  LysR_substrate 101 Ladeplilleegsglrdlledalreaglkp...rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpep.plprelylvyrkgr 191
                     L ++pl++      +r+ +  ++++ g +p   r++  +++ + + +++ aG+G all rs+++++l +grlv  pl++p + p +++lvy++  
      CTQ27657.1 184 LLQYPLLH----DEHREDWALWCEAVGMAPhfaRRGPVFTDSNGVTEAAFAGMGMALLRRSFIAPALTQGRLV-NPLAQPiACPLAYHLVYHETA 273
                     ********....889999999*********999****************************************.9999987888*********** PP

                     CCHHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidflr 205
                      l pa r f+d+l+
      CTQ27657.1 274 LLAPANRCFRDWLL 287
                     ************97 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.8   3.7e-23   1.7e-19       1      60 []       6      65 ..       6      65 .. 0.98
   2 ?   -3.9   0.0       3.2   1.4e+04      16      24 ..      78      86 ..      75      88 .. 0.46

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 3.7e-23
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l++lr+f+a a+  s+  AA eL ++++avs+qi+rLEe l+vpLf+Rt r+l+LT+ Ge
  CTQ27657.1  6 LNALRCFEAAARLLSLKLAASELCVTPSAVSQQIARLEETLNVPLFIRTPRRLQLTAVGE 65
                789******************************************************997 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.2
                HHHHHHHHT CS
       HTH_1 16 ftrAAeeLg 24
                +++A ++L 
  CTQ27657.1 78 IAAATQRLQ 86
                344444443 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     4e-05      0.18      13      53 ..      19      60 ..       6      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4e-05
                T-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TT.SHHHHHHH CS
      HTH_30 13 gnisatAkaLhvHrnTlryRLrrieellgldld.dpddrlaL 53
                 +++ +A +L v +  +++ + r+ee l+++l  ++ +rl+L
  CTQ27657.1 19 LSLKLAASELCVTPSAVSQQIARLEETLNVPLFiRTPRRLQL 60
                58899************************9976566677776 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   6.8e-05      0.31      11      47 ..       6      44 ..       5      45 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.8e-05
                HHHHHCTTTS.EE.EHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 11 LaaLgrrpgr.dl.tvgelarrlglsksavsrilkrLva 47
                L+aL++ +   +l + +  a +l +++savs+ ++rL++
  CTQ27657.1  6 LNALRCFEAAaRLlSLKLAASELCVTPSAVSQQIARLEE 44
                667777777674458899999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2266.71
//
Query:       CTQ27658.1  [L=66]
Description: hypothetical protein CH1034_190141 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   14.0   0.1      0.024   14.0   0.1    1.0  1  HemX      HemX, putative uroporphyrinogen-III C-methyltransfe


Domain annotation for each model (and alignments):
>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.3e-06     0.024     228     267 ..      27      66 .]      16      66 .] 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-06
        HemX 228 lshfirirrrdksakplLaPnqdiylrenirlrLeiAilA 267
                 + h+i i+ ++++ + l +Pnq  +l + +r+r   Ai A
  CTQ27658.1  27 IIHLIEINSQEQNLAILFTPNQYHQLHKKLRIRETYAISA 66 
                 5699*****************************8888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.25s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 538.94
//
Query:       CTQ27659.1  [L=130]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1017.86
//
Query:       CTQ27660.1  [L=458]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   18.3   1.0      0.014   15.6   1.6    2.1  2  PAAR_motif  PAAR motif


Domain annotation for each model (and alignments):
>> PAAR_motif  PAAR motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.6   7.6e-07     0.014       2      46 ..      11      57 ..      10      78 .. 0.81
   2 ?   -0.2   0.0     0.063   1.1e+03      20      42 ..      60      84 ..      57     105 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.6e-07
                -BTTB---BB-----SEEETTEEB-BTT-BB...--E..--B----S CS
  PAAR_motif  2 GdkthhgGpiipgsptvliggkpaArvgdsvvCppck..gaiakgss 46
                Gdkt +gG+i++g + +    + + + g++v+C +++  ++i  g +
  CTQ27660.1 11 GDKTRCGGVITEGWSDHQHFDRDMSCEGHKVTCGKHPglYRICGGLD 57
                9*********************************8777777765544 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.063
                ETTEEB-BTT-BB....--E.--B.- CS
  PAAR_motif 20 iggkpaArvgdsvv.Cppck.gai.a 42
                i+gk +A   +s + Cp ck + i +
  CTQ27660.1 60 IHGKRIAGTLHSYSsCP-CKsKFInS 84
                67888887555555499.55444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3581.42
//
Query:       CTQ27661.1  [L=168]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-12   46.1   1.0    5.6e-12   45.6   1.0    1.2  1  PAAR_motif  PAAR motif


Domain annotation for each model (and alignments):
>> PAAR_motif  PAAR motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   1.0   3.1e-16   5.6e-12       2      70 .]      70     140 ..      69     140 .. 0.94

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 3.1e-16
                 -BTTB---BB-----SEEETTEEB-BTT-BB...--E.--B----SSEEET.TEEB-BTT-BBTTS-BB-. CS
  PAAR_motif   2 GdkthhgGpiipgsptvliggkpaArvgdsvvCppck.gaiakgsstvlig.GkpaArvgdktaCgatvis 70 
                 G+ t  gG+i  +s+  + gg+++Arvgd+vv++ ++ ++i++g+++  i+ G  aA+vg+++  g+ +is
  CTQ27661.1  70 GSLTRRGGVIRHASGGATTGGLQVARVGDKVVYADGSeSTIISGAGKARIMqGASAALVGSMLDNGDEIIS 140
                 778999****************************88899*********7777***************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1280.58
//
Query:       CTQ27662.1  [L=46]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 366.11
//
Query:       CTQ27663.1  [L=300]
Description: 23S rRNA pseudouridylate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-16   60.5   0.0    6.2e-16   58.9   0.0    1.8  2  PseudoU_synth_2  RNA pseudouridylate synthase
    8.2e-11   41.4   0.3    2.4e-10   39.9   0.3    1.9  1  S4               S4 domain


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   6.9e-20   6.2e-16       2     157 ..      69     199 ..      68     202 .. 0.86
   2 ?   -2.9   0.1      0.72   6.4e+03     154     154 ..     268     268 ..     239     293 .. 0.56

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 6.9e-20
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      +++++KP+g  +++ +      e + t  ++ ++    ++ +v+RLD++t Glll+++++e+an+l++  ++r+v+++Y + vf       g++
       CTQ27663.1  69 VLAYYKPEGELCTRND-----PEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMH--PSREVEREYAVRVF-------GQV 148
                      7899************.....9999999999999**********************************..*************9.......333 PP

  PseudoU_synth_2  96 kkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvh 157
                          ++  +k    +r ++ +dg  a   +k+   +     + +++++++l +Gr++++R+ 
       CTQ27663.1 149 ----DD--DKLRQLSRGVQLEDGPAAFKTIKFTGGE-----GINQWYNVTLTEGRNREVRRL 199
                      ....22..2333466677777777777777777777.....999****************86 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.72
  PseudoU_synth_2 154 i 154
                      i
       CTQ27663.1 268 I 268
                      1 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.3   2.7e-14   2.4e-10       2      43 ..       4      43 ..       3      55 .. 0.93

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 2.7e-14
                EHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE- CS
          S4  2 RLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVk 43
                 L+kvlar+g +s rre++  Ie+GrV V+Gk+++  ++rV+
  CTQ27663.1  4 KLQKVLARAGHGS-RREIEAKIEAGRVSVDGKIAT-LGDRVE 43
                79**********9.*********************.****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2298.37
//
Query:       CTQ27664.1  [L=196]
Description: cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-59  201.5   0.0    1.4e-59  201.2   0.0    1.1  1  CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/C
    3.2e-06   26.9   4.7    3.2e-06   26.9   4.7    1.9  2  Co_AT_N         Cob(I)alamin adenosyltransferase N terminal
  ------ inclusion threshold ------
      0.034   14.5   0.1        2.1    8.8   0.0    2.3  2  Smr             Smr domain
      0.046   13.5   0.2        8.8    6.0   0.0    2.1  2  IstB_IS21       IstB-like ATP binding protein
      0.066   12.8   0.0        0.1   12.2   0.0    1.2  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
       0.25   11.3   0.4       0.52   10.3   0.2    1.6  2  ResIII          Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.2   0.0   4.6e-63   1.4e-59       2     172 .]      28     196 .]      27     196 .] 0.99

  Alignments for each domain:
  == domain 1  score: 201.2 bits;  conditional E-value: 4.6e-63
  CobA_CobO_BtuR   2 kglihvytGdGKGKttAAlGlalRalgaglkvlvvqFlKgekesgElaalkkleielerlgkegfvkmeeeekeedaaaakealekakealasee 96 
                     +g+++v+tG+GKGKttAA+G+a Ra+g+g+kv v+qF+Kg++  gE+++l+  ++e++ +  +gf+ +++++++ d+aa+ + +e+a+++la+++
      CTQ27664.1  28 RGIVMVFTGNGKGKTTAAFGTATRAVGHGKKVGVIQFIKGTWPNGERNLLEPHGVEFQVMA-TGFT-WNTQDRDSDTAACLAVWEHARRMLADDQ 120
                     89***************************************************99999999.99**.**************************** PP

  CobA_CobO_BtuR  97 ydlvvlDEinyalklglldeeevlellkkkpeklelvlTGrnapeelleaADlvtemkkvkHpydkgikarkGiey 172
                     +dlv+lDE++y++++++l+ e+vl++l+++p+++ +++TGr+++++++e+AD+v+e+++vkH++d+gika+ Gi+y
      CTQ27664.1 121 LDLVLLDELTYMVAYDYLPLESVLSALRERPAHQSVIITGRGCHRDIIELADTVSELRPVKHAFDAGIKAQMGIDY 196
                     ***************************************************************************8 PP

>> Co_AT_N  Cob(I)alamin adenosyltransferase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   4.7   1.1e-09   3.2e-06       7      25 .]       3      21 ..       1      21 [. 0.94
   2 ?   -2.4   0.4       1.7     5e+03      19      24 ..      23      28 ..      23      28 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.1e-09
     Co_AT_N  7 qeRHrqrMQRrKevqDari 25
                +eR+r+r+QR+K ++Dar+
  CTQ27664.1  3 DERYRERQQRLKDKVDARV 21
                8*****************8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
     Co_AT_N 19 evqDar 24
                ++qD+r
  CTQ27664.1 23 AAQDER 28
                789998 PP

>> Smr  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.031        93       7      40 ..       9      41 ..       6      71 .. 0.76
   2 ?    8.8   0.0   0.00069       2.1      15      46 ..     140     178 ..     121     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.031
                -HHHHHHHHHHHHHHHHHTT-SEEEEE--STTST CS
         Smr  7 rraealnvletfldaasakglrsvevihGkGaha 40
                r++  ++ ++  ++aa+ +    v v +G G+ +
  CTQ27664.1  9 RQQRLKDKVDARVAAAQDE-RGIVMVFTGNGKGK 41
                5566677778888888777.9999*****99954 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00069
                 HHHHHHHHHHTT-SEEEEE--STTSTT.......HCHHH CS
         Smr  15 letfldaasakglrsvevihGkGahag.......vgvLr 46 
                 le +l a +++  ++  +i+G+G h++       v  Lr
  CTQ27664.1 140 LESVLSALRERPAHQSVIITGRGCHRDiieladtVSELR 178
                 78999999999999**********988555665655555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.003       8.8      48      78 ..      29      59 ..       3      66 .. 0.75
   2 ?    5.5   0.0    0.0041        12     104     147 ..     116     160 ..     108     167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.003
   IstB_IS21 48 enivllGpsGvGKshlaialgveavraglsv 78
                  ++++ + G GK+  a   +++av +g++v
  CTQ27664.1 29 GIVMVFTGNGKGKTTAAFGTATRAVGHGKKV 59
                3455667789999999999999999999998 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0041
   IstB_IS21 104 krllkvdllilDdlgll.pldqaeaellfeviekryerrsiiits 147
                  +  + dl++lD+l +    d    e ++  + +r  ++s+iit 
  CTQ27664.1 116 LADDQLDLVLLDELTYMvAYDYLPLESVLSALRERPAHQSVIITG 160
                 4556889********972567778899****************96 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.4e-05       0.1      40     100 ..     110     170 ..     105     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.4e-05
                     HHHHHHHHTTS-SEEE--HHHHHHHHHHS-EEEEEEEEETT--SEEEEEEEEETT..SS--SH CS
  Phosphonate-bd  40 aavvealragqvDiaflgplayvqardqagveplatrvrsdGsasyrsviivrad..sdiqsl 100
                     +++ + l+ +q+D+++l+ l+y++a d   +e ++   r   ++  +svii++++  +di +l
      CTQ27664.1 110 EHARRMLADDQLDLVLLDELTYMVAYDYLPLESVLSALR--ERPAHQSVIITGRGchRDIIEL 170
                     56778999********************99988888886..799********99732345444 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00017      0.52       5      55 ..       7      57 ..       4      66 .. 0.79
   2 ?   -2.8   0.0       1.8   5.4e+03     121     140 ..     103     128 ..      92     130 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00017
                -HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S..... CS
      ResIII  5 reyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee 55
                re Q++  +++ + + + +d+rg++   TG GK  + a++  + +  g+ +
  CTQ27664.1  7 RERQQRLKDKVDARVAAAQDERGIVMVFTGNGKGKTTAAFGTATRAVGHGK 57
                78899999999999999*************999888887766665555555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.8
                 ............HHHTTT-SEEEEET CS
      ResIII 121 e......eeeseellrdrfdviiiDE 140
                 +      e ++  l +d+ d+++ DE
  CTQ27664.1 103 AaclavwEHARRMLADDQLDLVLLDE 128
                 24555555566667778888999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1459.31
//
Query:       CTQ27665.1  [L=266]
Description: putative oxoacyl-(acyl carrier protein) reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-51  175.1   0.0    1.2e-51  174.9   0.0    1.0  1  adh_short        short chain dehydrogenase
    1.9e-39  135.6   0.0    4.2e-39  134.5   0.0    1.5  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.3e-14   54.6   0.0    1.7e-14   54.2   0.0    1.1  1  KR               KR domain
    0.00095   18.7   0.0     0.0048   16.4   0.0    1.9  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0035   16.8   0.0      0.004   16.5   0.0    1.1  1  DUF1776          Fungal family of unknown function (DUF1776)
     0.0064   15.7   0.0     0.0081   15.3   0.0    1.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.9   0.0   4.2e-55   1.2e-51       2     193 ..      27     222 ..      26     224 .. 0.95

  Alignments for each domain:
  == domain 1  score: 174.9 bits;  conditional E-value: 4.2e-55
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTT..SHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGC CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvt..dreevealvekavkklgkldvLvnNAGi.tgsgpfsel 96 
                 ++lvtGas+GIGr+ a ++a+  a+v++++r+++kl++va+e+++e g     +++D+   + +++++l +++  ++ +ld + +NAG+    +p++e 
  CTQ27665.1  27 IILVTGASDGIGREAALTYARYSASVILLGRNDDKLRTVAQEIEREgGIPPRWFTLDLLtcTPQACQQLAQQISMHYPRLDGVLHNAGLlGDICPMEEQ 125
                 89********************************************9777777777765469***************************8899****** PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short  97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelrek 193
                 + e w++v++vN++g+f+lt+a+lp +l+++sG+ v++sS +g+++ a++ aY+ sK+a +g+++ la+e++++  rvn+++PG+++T+m++++ ++
  CTQ27665.1 126 KPEVWQQVMQVNVNGTFMLTQALLPLLLRSESGSLVFTSSSVGRQGRANWGAYAVSKFATEGMMQVLADEYQSRHLRVNCINPGGTRTGMRASAFPT 222
                 *******************************************************************************************998766 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   0.0   1.4e-42   4.2e-39       1     227 [.      32     254 ..      32     260 .. 0.90

  Alignments for each domain:
  == domain 1  score: 134.5 bits;  conditional E-value: 1.4e-42
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE..EEE--T..TSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae..vlecDV..tdeeqvealveevvekfgklDilvnnagiapklkgpfletsr 92 
                   Ga  gIGr++A ++a+  a+v+l  +n+++ +  ++e+++e+g     + +D     ++++++l++++  ++ +lD++++nag   +   p++e + 
    CTQ27665.1  32 GASDGIGREAALTYARYSASVILLGRNDDKlRTVAQEIEREGGIPprWFTLDLltCTPQACQQLAQQISMHYPRLDGVLHNAGLLGD-ICPMEEQKP 127
                   899***************************89999999999995544688886336799****************************.********* PP

                   HHHHHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTTHH CS
  adh_short_C2  93 eefdraldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikgfd 186
                   e ++++++vn++++f+l++a+lp l++++ gs+v +ss  ++++ +n  ay+++K a e++++ lA e+ ++  RvN++ pg ++T + as+++   
    CTQ27665.1 128 EVWQQVMQVNVNGTFMLTQALLPlLLRSEsGSLVFTSSSVGRQGRANWGAYAVSKFATEGMMQVLADEYQSRHLRVNCINPGGTRTGMrASAFP--- 221
                   ***********************7444446**********************************************************444444... PP

                   HHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEE CS
  adh_short_C2 187 elleelearaplgrlgtpeevaeaalfLasdeasyitGqtl 227
                           + pl+   tp ++  ++l+L+ d+++  tG t+
    CTQ27665.1 222 -------TEDPLKL-KTPADIMPVYLWLMGDDSRRKTGMTF 254
                   .......4557765.78999999999999999999999876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   5.6e-18   1.7e-14       3     173 ..      28     206 ..      27     212 .. 0.82

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 5.6e-18
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----T..T-HHHHHHHHHHHHHHSS---EEEE--------.-T CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDv..sdkdavealleeikaeeppikGvihaAgvlrdk.ll 97 
                  l+tG+  g+G+e a + a+  a +++ll+R+   d++ ++  +e+e+  g+  +++ +D+    ++a ++l ++i+ + p++ Gv+h Ag+l d  ++
  CTQ27665.1  28 ILVTGASDGIGREAALTYARYSA-SVILLGRN---DDKLRTVAQEIEREgGIPPRWFTLDLltCTPQACQQLAQQISMHYPRLDGVLHNAGLLGDIcPM 122
                 59************999888766.68999***...44555577788877588888999997335799**************************985389 PP

                 TT--HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHH....HHHHHHHHHHHHHHHHHHTEEEE CS
          KR  98 eemtaedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYa....aaNaflDalaeyrrsqglpavsi 173
                 ee++ e ++qv++  v+G+  L ++l +    ++   +v++SS  g  g a  ++Ya    a+  ++  la++ +s++l++ +i
  CTQ27665.1 123 EEQKPEVWQQVMQVNVNGTFMLTQALLPlllrSESGSLVFTSSSVGRQGRANWGAYAvskfATEGMMQVLADEYQSRHLRVNCI 206
                 ************************9998777788899*******************9333334455555555666666666655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.6e-06    0.0048       1     177 [.      28     213 ..      28     228 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.6e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HH.....HHHHHHHHH..T-SEEEE--S.---HHHHHHSH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrs.....alerlfkee..qpdavihlAa.vggvaassedp 84 
                 ilVtGa+  iG+  +   ++    vi l r+ ++ +t ++e         ++ +ldl+  +     +l++ ++ +  + d v+h A+  g++    e++
  CTQ27665.1  28 ILVTGASDGIGREAALTYARYSASVILLGRNDDKLRTVAQEIEreggippRWFTLDLLTCTpqacqQLAQQISMHypRLDGVLHNAGlLGDICPMEEQK 126
                 89*************999999999999999966666655554489999**6666665544444333555555555578999******999875555444 PP

                 ....HHHHHHHTHHHHHHHHHHH....HHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEEST CS
   Epimerase  85 ....adfieknlqgtlnlleaar....kagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGp 175
                     +++++ n++gt  l +a+     +++   l+f sS    G++ +            +   +Ya++K a e +++ +a++y+ + + +++ n  G 
  CTQ27665.1 127 pevwQQVMQVNVNGTFMLTQALLplllRSESGSLVFTSS--SVGRQGR------------ANWGAYAVSKFATEGMMQVLADEYQSRHLRVNCINPGGT 211
                 122245677999998888888885555667779999999..4676666............34589******************************9999 PP

                 TS CS
   Epimerase 176 rn 177
                 r+
  CTQ27665.1 212 RT 213
                 83 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.4e-06     0.004      86     198 ..     100     209 ..      25     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.4e-06
     DUF1776  86 kphvlrLkgvilvPslsyptgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkre 184
                   h+ rL gv+    l   + p+e+ +++ w+++++ ++  +++++qallpll      ++  +v++ s +     ++ +  a+   a + +++vL+ e
  CTQ27665.1 100 SMHYPRLDGVLHNAGLLGDICPMEEQKPEVWQQVMQVNVNGTFMLTQALLPLLLR---SESGSLVFTSSSVGRQGRANWGAYAVSKFATEGMMQVLADE 195
                 458888999988888888999*******************************996...55666666666666667777777788888999999999999 PP

     DUF1776 185 lrphnidvtqikLG 198
                 +++ ++ v +i+ G
  CTQ27665.1 196 YQSRHLRVNCINPG 209
                 99999999998755 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.7e-06    0.0081       1     129 [.      28     166 ..      28     213 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.7e-06
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT....T-SEEEE----..--H CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel..kvdvvfhaAAl..KhV 90 
                      +lvtGa+  iG+e   + ++ ++ ++ill r++ kl ++++e+e+e       +++  + +  +  ++l++ ++ +  + d v+h A l     
       CTQ27665.1  28 ILVTGASDGIGREAALTYARYSA-SVILLGRNDDKLRTVAQEIEREGGIPPRWFTLDLLTCTPQACQQLAQQISMHypRLDGVLHNAGLlgDIC 120
                      89***********9999888765.688999************8777666555466556666777778888777666226788*****9843467 PP

                      HHHHHSH...HHHHHHHHHHHHHHHHHH....HHTT-SEEEEEEEG CS
  Polysacc_synt_2  91 Plveenp...leaiktNvlgtenvieaa....ieagvkkvvliStD 129
                      P+ e++p    ++++ Nv gt  + +a     ++++  ++v+ S+ 
       CTQ27665.1 121 PMEEQKPevwQQVMQVNVNGTFMLTQALlpllLRSESGSLVFTSSS 166
                      8888875222578999****98887764111144555556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2091.74
//
Query:       CTQ27666.1  [L=360]
Description: putative inner membrane peptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-59  198.9   2.7    9.2e-59  197.9   2.7    1.5  1  Peptidase_S49_N  Peptidase family S49 N-terminal
    3.2e-43  147.3   0.0    5.7e-43  146.5   0.0    1.4  1  Peptidase_S49    Peptidase family S49
    0.00018   20.6   0.2    0.00031   19.8   0.2    1.4  1  SDH_sah          Serine dehydrogenase proteinase
  ------ inclusion threshold ------
      0.044   13.2   0.1      0.083   12.3   0.1    1.4  1  DAG1             Dystroglycan (Dystrophin-associated glycopro
      0.089   12.1   4.4       0.15   11.3   4.4    1.3  1  HemX             HemX, putative uroporphyrinogen-III C-methyl
      0.094   12.9   2.6       0.25   11.6   2.6    1.7  1  UPF0239          Uncharacterised protein family (UPF0239)
       0.15   12.7   7.2        0.3   11.7   7.2    1.5  1  RRP14            60S ribosome biogenesis protein Rrp14


Domain annotation for each model (and alignments):
>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.9   2.7   3.6e-62   9.2e-59       1     153 []      14     169 ..      14     169 .. 0.98

  Alignments for each domain:
  == domain 1  score: 197.9 bits;  conditional E-value: 3.6e-62
  Peptidase_S49_N   1 eflleyglFlaklvtlvvailvvvvlivalaakkkkekgelevtkLneeykelkeeleealldeeelkaaekkekkeekeekkaekkkake... 91 
                      e+l++yglFlak++t+vvai+v+ ++iv+la++kk ++gel+vt+L+e+yke+ke+l  alld  ++k+++k++kk++k+e+ka+k++ak    
       CTQ27666.1  14 ELLAQYGLFLAKIATVVVAIAVIAAIIVNLAQRKK-QRGELRVTNLSEHYKEMKESLAVALLDGPQQKQWHKAQKKKQKQEAKAAKARAKLgna 106
                      789*****************************998.78***********************************************999998888 PP

  Peptidase_S49_N  92 .eeekkrvfvldFkGdikAsevesLreeitavLsvakpeDevllrLesgGGvVhgYGlaasqL 153
                        e k+r +vldFkG+++A+ev+sLreeitavL++ak++D+v++rLes+GGvVhgYGlaasqL
       CTQ27666.1 107 ePEGKPRAWVLDFKGSMDAHEVNSLREEITAVLAAAKARDQVVIRLESPGGVVHGYGLAASQL 169
                      8899**********************************************************9 PP

>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.5   0.0   2.2e-46   5.7e-43       2     152 ..     172     320 ..     171     322 .. 0.97

  Alignments for each domain:
  == domain 1  score: 146.5 bits;  conditional E-value: 2.2e-46
                    HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--HHHHHHHHHHHHHHHH CS
  Peptidase_S49   2 akkakkPvvasaenvaaSggYylasaadkivanpstivgsiGvitqllnlenlldklgvevqvvkaGeyksavslrrelteeereilqrlldetyq 97 
                    ++++++P+++ +++vaaSggY++a++a+kiv++p++i gsiGv++q++nl+++l+  ++++++++aG+yk+++++  e+tee r ++++ l+et+ 
     CTQ27666.1 172 LRDKQIPLTVAVDKVAASGGYMMACVANKIVSAPFAILGSIGVVAQIPNLHRFLKNKDIDIELHTAGQYKRTLTMLGENTEEGRRKFREDLNETHH 267
                    689********************************************************************************************* PP

                    HHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCH CS
  Peptidase_S49  98 qFvqtVaknRnlsveqvdkiAegrvltgqqAlklgLvdelgtvddavaeleelak 152
                     F+++V ++R  +  +++++A+g++++g qAl++gLvd + t+d+++  l+e  +
     CTQ27666.1 268 LFKDFVHRMR--PGLDIEQVATGEHWYGVQALEKGLVDAVETSDELLLGLMESHE 320
                    **********..9*********************************999998766 PP

>> SDH_sah  Serine dehydrogenase proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.2   1.2e-07   0.00031      96     156 ..     150     213 ..     129     237 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.2e-07
     SDH_sah  96 liihtpGGlv....laatqiakalkehkaktrvivphyamsGGtlialaadeiildenavlGpvd 156
                 + + +pGG+v    laa q+   l++++ + +v v + a sGG ++a  a++i+  + a+lG + 
  CTQ27666.1 150 IRLESPGGVVhgygLAASQLQ-RLRDKQIPLTVAVDKVAASGGYMMACVANKIVSAPFAILGSIG 213
                 446789987655558999985.699*************************************874 PP

>> DAG1  Dystroglycan (Dystrophin-associated glycoprotein 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.2e-05     0.083     152     182 ..      27      57 ..      18      76 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        DAG1 152 avvvaailliagiiamicyrkkrkGkltled 182
                 a vv+ai +ia+ii+ +  rkk++G l + +
  CTQ27666.1  27 ATVVVAIAVIAAIIVNLAQRKKQRGELRVTN 57 
                 678889999*****************99844 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.4   5.9e-05      0.15       9      82 ..      26     100 ..      18     110 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.9e-05
        HemX   9 llallvala.vgaglyylgqqqvqeltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekel 82 
                 +  ++va+a ++a +++l+q ++q+ + +v++l+++ ++++++la +  +  q++++ ++ ++++++ ++++k+ 
  CTQ27666.1  26 IATVVVAIAvIAAIIVNLAQRKKQRGELRVTNLSEHYKEMKESLAVALLDGPQQKQWHKAQKKKQKQEAKAAKAR 100
                 344788999455559999999999999999*************99966555555555554444444433333333 PP

>> UPF0239  Uncharacterised protein family (UPF0239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.6   9.6e-05      0.25      17      87 ..      13      89 ..       7     102 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.6e-05
     UPF0239 17 lelllrYGLflGAifqlv...CilAiillpsskseesvee..eaessee....ksseqvkkpkaaaaqrlkkikKeeKKK 87
                +ell +YGLfl  i  +v    + A+i+++  + +++  e   ++ se+    k+s  v    ++ +++    +K +KKK
  CTQ27666.1 13 VELLAQYGLFLAKIATVVvaiAVIAAIIVNLAQRKKQRGElrVTNLSEHykemKESLAVALLDGPQQKQW---HKAQKKK 89
                68999******99887752224455555555554444322113333333211111111111222333333...4444444 PP

>> RRP14  60S ribosome biogenesis protein Rrp14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   7.2   0.00012       0.3      34      59 ..      77     103 ..      58     104 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
       RRP14  34 klkkqkkkkakkqtkeeskkaK.raKL 59 
                  ++kq++k++kk++k+e+k+aK raKL
  CTQ27666.1  77 PQQKQWHKAQKKKQKQEAKAAKaRAKL 103
                 689***********9999999747887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1698  (0.0947069); expected 358.6 (0.02)
Passed bias filter:                      905  (0.0504769); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 2812.48
//
Query:       CTQ27667.1  [L=83]
Description: hypothetical protein CH1034_190150 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-42  143.7   0.1    1.3e-42  143.5   0.1    1.0  1  DUF2498   Protein of unknown function (DUF2498)
  ------ inclusion threshold ------
      0.019   13.5   0.0      0.023   13.2   0.0    1.1  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> DUF2498  Protein of unknown function (DUF2498)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5   0.1   1.5e-46   1.3e-42       2      78 ..       5      81 ..       4      82 .. 0.98

  Alignments for each domain:
  == domain 1  score: 143.5 bits;  conditional E-value: 1.5e-46
     DUF2498  2 kkaiereaLLeeanklikehedyleGmeatdveqkedvLvFkGeyfldeqglPtekttavFnmfkyLahelsekytl 78
                +++i+r++LLe+ankli+ehed+l+G+eatdv+q+++vLvF Ge++ldeqglPt k+tavFnmfkyLahels+ky+l
  CTQ27667.1  5 TQPIDRQTLLEKANKLIREHEDTLAGIEATDVVQRNNVLVFSGEFYLDEQGLPTPKSTAVFNMFKYLAHELSDKYHL 81
                89**************************************************************************9 PP

>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.6e-06     0.023      47      79 ..       4      36 ..       2      41 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.6e-06
                TS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH CS
      Aldedh 47 klpaeeRaeiLrkaadlleerkeelaeletlet 79
                ++++ +R+ +L+ka +l++e+++ la +e++++
  CTQ27667.1  4 TTQPIDRQTLLEKANKLIREHEDTLAGIEATDV 36
                57899************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 640.94
//
Query:       CTQ27668.1  [L=865]
Description: DNA topoisomerase I, omega subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.6e-128  427.7   0.4   4.6e-128  427.7   0.4    1.6  2  Topoisom_bac     DNA topoisomerase
    8.6e-38  127.7   0.2      2e-22   78.6   2.1    2.5  2  Topo_Zn_Ribbon   Topoisomerase I zinc-ribbon-like
    1.7e-34  118.1   0.0    4.2e-34  116.9   0.0    1.7  1  Toprim           Toprim domain
    7.4e-18   64.1  18.0    2.7e-11   43.1   2.4    4.5  4  zf-C4_Topoisom   Topoisomerase DNA binding C4 zinc finger
  ------ inclusion threshold ------
      0.018   15.5   0.1       0.26   11.8   0.0    2.9  3  Toprim_4         Toprim domain
      0.058   13.3   0.2        0.8    9.6   0.0    2.4  2  DUF2399          Protein of unknown function C-terminus (DUF2
       0.13   12.8   0.0       0.53   10.7   0.0    2.1  1  Toprim_2         Toprim-like
       0.17   12.5  10.7       0.64   10.6   0.0    3.6  3  Zn_ribbon_recom  Recombinase zinc beta ribbon domain
       0.17   12.2   0.5       0.84    9.9   0.1    2.3  2  DUF1722          Protein of unknown function (DUF1722)
        0.3   11.0   6.4        1.9    8.5   0.0    3.4  3  OrfB_Zn_ribbon   Putative transposase DNA-binding domain
        1.2    9.2   6.7         54    3.9   6.5    2.7  2  DZR              Double zinc ribbon
        2.7    8.1   6.8         51    4.0   0.4    3.5  3  YhfH             YhfH-like protein
        9.8    6.1   7.3         73    3.3   0.1    3.5  3  zinc_ribbon_2    zinc-ribbon domain


Domain annotation for each model (and alignments):
>> Topoisom_bac  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.7   0.4  3.3e-131  4.6e-128       2     412 ..     157     564 ..     156     565 .. 0.94
   2 ?   -2.0   0.1         1   1.4e+03     254     294 ..     821     862 ..     815     865 .] 0.80

  Alignments for each domain:
  == domain 1  score: 427.7 bits;  conditional E-value: 3.3e-131
  Topoisom_bac   2 inenlvdaaeaRrelDwliGinlsrlltkklkgkkvlsaGRVqtptLaliveRereienFvpeeyweveatlkkekkeke....kkkkkkkerikdk 94 
                   +n + v+a++aRr +D+++G+ +s+ll+kk+   + lsaGRVq+++++l+veRerei++Fvpeeywev+a++++ ++ +      +k +k  r  ++
    CTQ27668.1 157 LNIDRVNAQQARRFMDRVVGYMVSPLLWKKIA--RGLSAGRVQSVAVRLVVEREREIKAFVPEEYWEVDASTTTPGGDALplqvTHKDDKPFRPVSR 251
                   68899************************999..9***********************************9855555555898888999999999** PP

  Topoisom_bac  95 eeaeaileklkkkeakvesvekkekkkppplpfdtttLqkeasrklglsakktlsiaqkLYekaglitYpRTdstrlseeaelkailealakkygke 191
                   +e +a+++ l+k ++ v + e+k ++++p  pf t+tLq++as++lg++ kkt+++aq+LYe  g+itY+RTdst+ls++a l+ ++ ++++k+gk+
    CTQ27668.1 252 DETMAAVSLLEKASYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA-GHITYMRTDSTNLSQDA-LNMVRGYISDKFGKK 346
                   **********8878************************************************5.*****************.9************** PP

  Topoisom_bac 192 ylefaekllkktkkksvvknkkveaHeAIrPteelp....klkelsddekklYelIvrrflaslmkdakyeettvkleveeeefkasgktilekGfk 284
                   yl+ ++++++ +k     +n++ eaHeAIrP  +++    +lk+ + d +klY+lI+r+f+a++m++a+y++tt+++ +++ ++ka+g+t+ ++G++
    CTQ27668.1 347 YLPDSANQYA-SK-----ENSQ-EAHEAIRPS-DVNvlaeTLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVAAGDFKLKARGRTLRFDGWT 435
                   ***9999888.33.....4788.9********.556454455777799999********************************************** PP

  Topoisom_bac 285 kvykeekkeeeeeelpelkegeevkvkeveleekkTkppkryteasLikamekagiGtpaTraeiieklvergYverkkkslvptelGkalvell.e 380
                   kv++  +k +e+++lp +k+g+++++ e++  +++Tkpp+r++easL+k++ek+giG+p+T+a+ii+++++rgYv+++++++++ ++G+ +++ l e
    CTQ27668.1 436 KVMPALRKGDEDRTLPLVKQGDRLSLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLeE 532
                   ***9999998878****************************************************************99****************88 PP

  Topoisom_bac 381 kfkdlvspelTaeleekLdeIaegkadakevl 412
                   +f dl+++++Ta++e++Ld++a+ +a++kevl
    CTQ27668.1 533 NFRDLMNYDFTAQMEDRLDQVANHQAEWKEVL 564
                   89****************************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1
  Topoisom_bac 254 dakyeettvklev.eeeefkasgktilekGfkkvykeekkee 294
                   d + ++t v+++  +++++ as k+ +  G+ +++ + k+ e
    CTQ27668.1 821 DPEGNKTLVRFSRkTKQQYVASEKEGKATGWSAFFIDGKWTE 862
                   6778899999966577999*************9996666654 PP

>> Topo_Zn_Ribbon  Topoisomerase I zinc-ribbon-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0     5e-15   6.8e-12       2      41 .]     758     793 ..     757     793 .. 0.97
   2 !   78.6   2.1   1.4e-25     2e-22       1      40 [.     824     863 ..     824     864 .. 0.97

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 5e-15
  Topo_Zn_Ribbon   2 npalvRFSrKtkeqYVlsEkdGKaTgWlAayidgKwretr 41 
                     +p+l   ++K+++++Vl+  dG+a+ +lAa++++K+retr
      CTQ27668.1 758 LPELP--CEKSDAYFVLR--DGAAGVFLAANTFPKSRETR 793
                     799**..***********..******************97 PP

  == domain 2  score: 78.6 bits;  conditional E-value: 1.4e-25
  Topo_Zn_Ribbon   1 gnpalvRFSrKtkeqYVlsEkdGKaTgWlAayidgKwret 40 
                     gn++lvRFSrKtk+qYV+sEk+GKaTgW+A++idgKw+e 
      CTQ27668.1 824 GNKTLVRFSRKTKQQYVASEKEGKATGWSAFFIDGKWTEA 863
                     8************************************995 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.0     3e-37   4.2e-34       2     103 .]       5     142 ..       4     142 .. 0.99

  Alignments for each domain:
  == domain 1  score: 116.9 bits;  conditional E-value: 3e-37
                 EEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHS......................................TTEEEEEECTTTHHHHHHHHHHHHH CS
      Toprim   2 lvivEgpsdaktiakalgsgfqavtaslGhildlet......................................efkpvyeeiedkkkvlkalkelakr 62 
                 lvivE+p++akti+k+lg ++++v++s+Ghi+dl+t                                      +++++ye++++k+kv+++lk+la++
  CTQ27668.1   5 LVIVESPAKAKTINKYLG-NDYVVKSSVGHIRDLPTsgsaskksadstatkgakkpkkdersalvnrmgvdpwhDWNAHYEVLPGKEKVVSELKQLAEK 102
                 9*****************.******************************************************************************** PP

                 HSEEEEECSSSHHHHHHHHHHHHHHTHHHTTTEEEEEESSS CS
      Toprim  63 adeiilatDpDreGeaiawellevlkellenkigrvefsei 103
                 ad+i+latD DreGeaiaw+l+ev++ ++e++++rv+f+ei
  CTQ27668.1 103 ADHIYLATDLDREGEAIAWHLREVIG-GDEQRYSRVVFNEI 142
                 **************************.99999*******98 PP

>> zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.4   5.8e-09   7.9e-06       2      27 ..     597     622 ..     596     639 .. 0.81
   2 ?   -2.3   2.5         3   4.1e+03       2      11 ..     660     669 ..     659     692 .. 0.69
   3 !   43.1   2.4   1.9e-14   2.7e-11       1      39 []     708     745 ..     708     745 .. 0.93
   4 ?    4.2   0.0     0.027        38       4      31 ..     763     790 ..     762     795 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 5.8e-09
                     EE-SSS--EEEEEE-SSSEEEEESST CS
  zf-C4_Topoisom   2 ekCPkCggdLvlkrgkkGkFvGCsnY 27 
                     ++CP Cg ++ +++   G F+GCs Y
      CTQ27668.1 597 IDCPTCGRKMGIRTASTGVFLGCSGY 622
                     58***********************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3
                     EE-SSS--EE CS
  zf-C4_Topoisom   2 ekCPkCggdL 11 
                     + C kCg  +
      CTQ27668.1 660 RRCQKCGTAM 669
                     6799999766 PP

  == domain 3  score: 43.1 bits;  conditional E-value: 1.9e-14
                     -EE-SSS--EEEEEE-SSSEEEEESST.T----EEB-GG CS
  zf-C4_Topoisom   1 vekCPkCggdLvlkrgkkGkFvGCsnYPeCkftkklkkn 39 
                     v++C+kCg++++lk+g++Gk+++C+n  eCk+t+k+ +n
      CTQ27668.1 708 VVECEKCGSEMHLKMGRFGKYMACTND-ECKNTRKILRN 745
                     579***********************6.*******9775 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.027
                     -SSS--EEEEEE-SSSEEEEESST.T-- CS
  zf-C4_Topoisom   4 CPkCggdLvlkrgkkGkFvGCsnYPeCk 31 
                     C+k  +  vl+ g  G F++ + +P+ +
      CTQ27668.1 763 CEKSDAYFVLRDGAAGVFLAANTFPKSR 790
                     677677789****************965 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.6   2.2e+03       2      38 ..       4      41 ..       3      61 .. 0.73
   2 ?   11.8   0.0   0.00019      0.26      46      87 ..      95     136 ..      80     138 .. 0.71
   3 ?   -2.7   0.0       6.1   8.4e+03       7      24 ..     547     564 ..     546     578 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.6
    Toprim_4  2 eiiiVEgyaDvlaleka.giknvvavlggalspldgir 38
                +++iVE++a +  + k+ g   vv +  g ++ l   +
  CTQ27668.1  4 ALVIVESPAKAKTINKYlGNDYVVKSSVGHIRDLPTSG 41
                689******99999999998888887776665555554 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00019
    Toprim_4  46 nlveaekkvkevilaldgDaeGeataerlaellleegvkvtr 87 
                 +l++  +k++ ++la+d D eGea a +l e ++  +++ +r
  CTQ27668.1  95 ELKQLAEKADHIYLATDLDREGEAIAWHLREVIGGDEQRYSR 136
                 233345678*****************9999966555566555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 6.1
    Toprim_4   7 EgyaDvlalekagiknvv 24 
                 E++ D +a ++a++k v 
  CTQ27668.1 547 EDRLDQVANHQAEWKEVL 564
                 8999********999875 PP

>> DUF2399  Protein of unknown function C-terminus (DUF2399)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00058       0.8      57     103 ..      93     139 ..      88     175 .. 0.78
   2 ?    0.7   0.1      0.32   4.4e+02      88     141 ..     340     392 ..     328     394 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00058
     DUF2399  57 lelldklaaagarlrYhGDfDwpGlaianklaerfgarpwRmdaadY 103
                 ++ l++la++  +++   D+D++G aia +l+e +g    R+++  +
  CTQ27668.1  93 VSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGGDEQRYSRVVF 139
                 56699*******************************99999888777 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.32
     DUF2399  88 aerfgarpwRmdaadYaaalaavaaaklvgrrldaewddelaeamaelgvaiye 141
                   +fg + +  +a++Y a ++++++a+ + r+ d + ++e+ + m++   ++y+
  CTQ27668.1 340 SDKFGKKYLPDSANQY-ASKENSQEAHEAIRPSDVNVLAETLKDMEADAQKLYQ 392
                 566777777778999*.77888888888999999999********999988887 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00038      0.53      28      69 ..      88     128 ..      52     145 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00038
    Toprim_2  28 GtalteaalkllerypekkvvlalDnDkaGrkaakrlaellr 69 
                 G +     lk+l+++ +++++la+D D+ G++ a  l+e++ 
  CTQ27668.1  88 GKEKVVSELKQLAEK-ADHIYLATDLDREGEAIAWHLREVIG 128
                 444444667888888.677**************999998774 PP

>> Zn_ribbon_recom  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00047      0.64       8      49 ..     599     642 ..     597     648 .. 0.80
   2 ?    2.0   0.5      0.23   3.1e+02       5      15 ..     659     669 ..     655     694 .. 0.80
   3 ?    3.5   1.9     0.075     1e+02       6      33 ..     709     740 ..     708     747 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00047
  Zn_ribbon_recom   8 CgeCGspmtrrkrkgkrhyYrCstyrrkgk.kCsnh..sireekl 49 
                      C  CG++m  r++ +      Cs+y    k +C+ +   ++e+++
       CTQ27668.1 599 CPTCGRKMGIRTA-STGVFLGCSGYALPPKeRCKTTinLVPENEV 642
                      ***********99.67799******98887459887656666665 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.23
  Zn_ribbon_recom   5 llrCgeCGspm 15 
                      + rC +CG +m
       CTQ27668.1 659 KRRCQKCGTAM 669
                      569******99 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.075
  Zn_ribbon_recom   6 lrCgeCGspmtrrkrk.gkr...hyYrCstyr 33 
                      + C +CGs m+ +  + gk+       C+++r
       CTQ27668.1 709 VECEKCGSEMHLKMGRfGKYmacTNDECKNTR 740
                      56**********98887877644444666654 PP

>> DUF1722  Protein of unknown function (DUF1722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.4   3.3e+03      39      85 ..     312     359 ..     307     383 .. 0.61
   2 ?    9.9   0.1   0.00061      0.84      13      72 ..     520     581 ..     511     583 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.4
     DUF1722  39 mealskpatrkkhinvlqhilgyfkkklsae.ekqelleliekYregk 85 
                 +ea   +  r+  +n  q +l +++  +s +  k++l ++ ++Y  ++
  CTQ27668.1 312 YEAGHITYMRTDSTNLSQDALNMVRGYISDKfGKKYLPDSANQYASKE 359
                 555555555666666666666666655554424556666666665544 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00061
     DUF1722  13 relgrlvanakkepleelae.eYeellmealskpatrkk.hinvlqhilgyfkkklsaeekq 72 
                 +++g++v ++ +e++ +l++ ++ +++++ l + a+++    +vl+h +g f ++l ++ek 
  CTQ27668.1 520 EKMGEIVTDRLEENFRDLMNyDFTAQMEDRLDQVANHQAeWKEVLNHFFGDFTTQLATAEKD 581
                 689***********99998757999999999999887651568****************995 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0014       1.9      22      39 ..     589     607 ..     568     619 .. 0.78
   2 ?    2.0   0.5      0.14     2e+02      30      51 ..     661     685 ..     652     694 .. 0.80
   3 ?    1.4   0.4      0.22     3e+02      30      40 ..     710     720 ..     696     740 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0014
  OrfB_Zn_ribbon  22 vnpay.TSktCseCgsknk 39 
                      np   TS +C+ Cg+k+ 
      CTQ27668.1 589 PNPMVlTSIDCPTCGRKMG 607
                     577788*********9975 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.14
  OrfB_Zn_ribbon  30 tCseCgsknke...alsgrtfkCpn 51 
                     +C +Cg  ++    ++++++++C n
      CTQ27668.1 661 RCQKCGTAMDSyliDPKRKLHVCGN 685
                     6889998888888888888888865 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.22
  OrfB_Zn_ribbon  30 tCseCgsknke 40 
                     +C +Cgs++  
      CTQ27668.1 710 ECEKCGSEMHL 720
                     46666655554 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.13   1.8e+02      28      38 ..     596     606 ..     573     613 .. 0.71
   2 ?    3.9   6.5     0.039        54      12      40 ..     659     720 ..     591     737 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.13
         DZR  28 edrCpsCgekv 38 
                 ++ Cp Cg+k+
  CTQ27668.1 596 SIDCPTCGRKM 606
                 56677777664 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.039
         DZR  12 arfCseCgtklkavaa.................................edrCpsCgekvdp 40 
                 +r C++Cgt+++++                                      C +Cg+++++
  CTQ27668.1 659 KRRCQKCGTAMDSYLIdpkrklhvcgnnptcdgyeieegefrikgydgpVVECEKCGSEMHL 720
                 45788888887655556667888888888888888888888888888888888888887765 PP

>> YhfH  YhfH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.3       0.2   2.8e+02      16      23 ..     599     606 ..     595     608 .. 0.91
   2 ?    3.7   0.0     0.044        61      14      24 ..     660     670 ..     655     672 .. 0.85
   3 ?    4.0   0.4     0.037        51      15      24 ..     710     719 ..     707     721 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.2
        YhfH  16 CteCGkei 23 
                 C++CG ++
  CTQ27668.1 599 CPTCGRKM 606
                 *****998 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.044
        YhfH  14 KkCteCGkeie 24 
                   C++CG  ++
  CTQ27668.1 660 RRCQKCGTAMD 670
                 57******997 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.037
        YhfH  15 kCteCGkeie 24 
                 +C +CG+e++
  CTQ27668.1 710 ECEKCGSEMH 719
                 8*******96 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.8      0.26   3.5e+02       2       8 ..     599     605 ..     599     607 .. 0.78
   2 ?    3.2   0.1     0.055        76       2       7 ..     662     667 ..     657     671 .. 0.68
   3 ?    3.3   0.1     0.053        73      16      22 ..     711     717 ..     708     718 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.26
  zinc_ribbon_2   2 CpnCGae 8  
                    Cp CG++
     CTQ27668.1 599 CPTCGRK 605
                    8888876 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.055
  zinc_ribbon_2   2 CpnCGa 7  
                    C +CG+
     CTQ27668.1 662 CQKCGT 667
                    555554 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.053
  zinc_ribbon_2  16 CpyCGtp 22 
                    C++CG++
     CTQ27668.1 711 CEKCGSE 717
                    8888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 6055.34
//
Query:       CTQ27669.1  [L=324]
Description: DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-40  137.9   0.0    3.7e-40  137.5   0.0    1.1  1  LysR_substrate  LysR substrate binding domain
    3.5e-15   55.7   0.0    6.5e-15   54.8   0.0    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   0.0   4.1e-44   3.7e-40       5     205 ..      92     292 ..      90     296 .. 0.95

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 4.1e-44
                     CEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   5 rgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLargepvsl 98 
                     +g+L +++++t ary lp +++ f +ryP+v+l++++g+++++++++ +g +D+ai+++ +   ++l+  p ++  + +v+ p+hpLa + +vs+
      CTQ27669.1  92 KGSLYVATTHTQARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALhLYDDLVMLPCYHWNRSIVVTPEHPLATKGSVSI 186
                     799******************************************************************************************** PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTCC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgre 192
                     e+La++pl++++ g++ r +l+ a+ +agl+pr+++++++++ ++  v+ GlG++++ ++av d + d++lv l+  +  ++ +++ + +r++  
      CTQ27669.1 187 EELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAV-DPVSDPDLVKLDANG-IFShSTTKIGFRRSTF 279
                     **************************************************************.559999999788888.5555************ PP

                     CHHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidflr 205
                     l++ + +fi+ ++
      CTQ27669.1 280 LRSYMYDFIQRFA 292
                     *999999999776 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   7.2e-19   6.5e-15       1      60 []       3      64 ..       3      64 .. 0.98

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 7.2e-19
                HHHHHHHHHHHHHS.SHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSE.EEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeeg.sftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrg.lrLTeaGe 60
                l+qlr+ v+v+ +  +++  Ae L++sqp +s+q++ LE+elg ++f R+g++ +++T+aG+
  CTQ27669.1  3 LQQLRYIVEVVNHNlNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHlTQVTPAGQ 64
                78***********************************************999989******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2385.78
//
Query:       CTQ27670.1  [L=55]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 418.86
//
Query:       CTQ27671.1  [L=890]
Description: aconitate hydratase 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.3e-184  613.7   0.0     3e-184  613.4   0.0    1.1  1  Aconitase    Aconitase family (aconitate hydratase)
    2.1e-49  167.2   0.0    3.5e-49  166.5   0.0    1.4  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  613.4   0.0  3.3e-188    3e-184       4     461 .]      69     562 ..      61     562 .. 0.93

  Alignments for each domain:
  == domain 1  score: 613.4 bits;  conditional E-value: 3.3e-188
   Aconitase   4 wdahlveeegiayvpdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsv.....gaeealeknledefernkeryefLksaakaf 97 
                 w ++++++++iay p+rvl+qd+tgv+a+vdlaa+reav+rlgg++a++++l pvdlvidhsv     g++ea+e+n++ e+ern+ery+fL+++++af
  CTQ27671.1  69 WLQQAHADREIAYRPARVLMQDFTGVPAVVDLAAMREAVKRLGGDTAKVNPLSPVDLVIDHSVtvdrfGDDEAFEDNVRLEMERNHERYAFLRWGQQAF 167
                 5445555556***************************************************************************************** PP

   Aconitase  98 .girvvppgqGIvHqvnlEy...........g..lalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtak 182
                   ++vvppg+GI+HqvnlEy           g  +a+p+ t+vgtDSHTtmi+glGvl++GvGgieaea++lgqp+++ ip+vvg+kl+Gkl+eg+ta+
  CTQ27671.1 168 sRFSVVPPGTGICHQVNLEYlgravwseevnGqwMAWPD-TLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPVSMLIPDVVGFKLSGKLREGITAT 265
                 *********************9999999888467*****.*********************************************************** PP

   Aconitase 183 DlvlavigklrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaav.lveaydkaqalfelaadedaeydkvl 280
                 Dlvl+v+++lr++gvvgk+vEf+G+g+++L+l+draTiaNMa+E+GAt+g+fp+d+ tl+Y++++gr+e++v lveay+kaq++++   d +++++++l
  CTQ27671.1 266 DLVLTVTQMLRQHGVVGKFVEFYGDGLDTLPLADRATIANMAPEYGATCGFFPIDDVTLSYMRLSGRSEEQVaLVEAYAKAQGMWRQPGD-EPVFTSTL 363
                 ************************************************************************9************87766.67****** PP

   Aconitase 281 eldlstlepsvagpkrPqdavplselvkkefkeele.....keaaekaley.klkegtklkdgkvdiaaigSCTNssnedvraaaglla.kavekglkv 372
                  ld+s++e s+agpkrPqd+v+l ++v+k+f+ + e      +++++ ++y  ++++++l dg+v iaai+SCTN+sn++v +aaglla kave+gl++
  CTQ27671.1 364 ALDMSSVEASLAGPKRPQDRVAL-GDVPKAFAASGElevnhLQRQRQPVDYtLNGHHYSLPDGAVAIAAITSCTNTSNPSVLMAAGLLAkKAVERGLQP 461
                 ***********************.777766665444446554555666777546679****************************************** PP

   Aconitase 373 kpgvktsvaPGSevvkayleaeGlleiLekaGfevvgagCstCignsdrle........ege...aivsssNRNFegRqgpntra.yLaSPelvvaaAl 459
                 +p+vk+s+aPGS+vv++yl ++Gl+++L+++Gf++vg+gC+tCigns++l+        +g+    +v+s+NRNFegR++p +++ +LaSP+lvva+Al
  CTQ27671.1 462 QPWVKASLAPGSKVVSDYLAHAGLTPYLDQLGFNLVGYGCTTCIGNSGPLPepieeaikKGDltvGAVLSGNRNFEGRIHPLVKTnWLASPPLVVAYAL 560
                 **************************************************98887777655599899******************************** PP

   Aconitase 460 aG 461
                 aG
  CTQ27671.1 561 AG 562
                 *9 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.5   0.0   3.9e-53   3.5e-49       3     130 ..     691     818 ..     689     819 .. 0.98

  Alignments for each domain:
  == domain 1  score: 166.5 bits;  conditional E-value: 3.9e-53
                  CCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHHHT CS
  Aconitase_C   3 kllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalrll 100
                  ++l+++G++++d++s+++++++++++++gt+ani+++ne+v++++ ++t++l+d e ++++daa+ yk eg++l viagk++G+GSSR++AAk++rll
   CTQ27671.1 691 RYLQEHGVARRDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGVEGGMTRHLPDPEPMAIYDAAMLYKAEGTPLAVIAGKEYGSGSSRDWAAKGPRLL 788
                  79************************************************************************************************ PP

                  TEEEEEES-B-HHHHHHHHHTT-EEEEEST CS
  Aconitase_C 101 GikaviaeSFerIfennliknglLplefke 130
                  Gi++viaeSFerI+++nli++g+Lplef++
   CTQ27671.1 789 GIRVVIAESFERIHRSNLIGMGILPLEFPQ 818
                  ****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 6304.31
//
Query:       CTQ27672.1  [L=200]
Description: GTP cyclohydrolase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-67  226.7   0.0    1.3e-67  226.5   0.0    1.0  1  GTP_cyclohydro2  GTP cyclohydrolase II


Domain annotation for each model (and alignments):
>> GTP_cyclohydro2  GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.5   0.0   7.2e-72   1.3e-67       2     163 .]       5     170 ..       4     170 .. 0.99

  Alignments for each domain:
  == domain 1  score: 226.5 bits;  conditional E-value: 7.2e-72
                      XEEEEEEEETTEEEEEEEE--.....EEEEEE-.........EEEEEE--HHHHHS-B--TTTTTHHHHHHHHHHHH-.EEEEEE--TTTTTHH CS
  GTP_cyclohydro2   2 rvaeaklptrfgefrliayedkvdgkehlalvkgdi....pvlvRvHsecltgDvlgslrcdcgeqldealeliaeegrGvlvylrqegrgigl 91 
                      rvaeaklpt +g+f ++++e+ ++g+ h+alv+gdi    pvl RvHsecltgD+l slrcdcg ql++al +iaeegrG+l+y rqegr+igl
       CTQ27672.1   5 RVAEAKLPTPWGDFLMVGFEELATGQDHVALVYGDIsgqsPVLARVHSECLTGDALFSLRCDCGFQLEAALSHIAEEGRGILLYHRQEGRNIGL 98 
                      777***********************************************************************99****************** PP

                      HHHHHHHHHHHCT--HHHHHHHHT--S-----HHHHHHHHHTT--EEEEE-S-HHHHHHHCTT....SEEEE CS
  GTP_cyclohydro2  92 lnklkayalqdeglDTveanlalglpadardygiaaqILkdlgvkkirLlTnnpekveaLegfgievvervp 163
                      lnk++ayalqd+g+DTvean++lg++ad+rd++++a + k l+v+++rLlTnnp+kve L++ gi++vervp
       CTQ27672.1  99 LNKIRAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLNVEQVRLLTNNPKKVEILTEAGINIVERVP 170
                      **********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1585.57
//
Query:       CTQ27673.1  [L=255]
Description: phosphatidylglycerophosphatase B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-30  103.4   5.3      8e-30  103.4   5.3    2.0  2  PAP2            PAP2 superfamily
      1e-06   28.6  13.0      1e-06   28.6  13.0    1.9  1  PAP2_3          PAP2 superfamily
  ------ inclusion threshold ------
       0.17   11.8   0.2         10    6.1   0.0    2.2  2  Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis 
          5    7.7  10.5      0.084   13.4   1.6    2.3  2  PAP2_C          PAP2 superfamily C-terminal


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   2.5     0.091   4.1e+02      67      96 ..      58      85 ..       5      88 .. 0.67
   2 !  103.4   5.3   1.8e-33     8e-30       3     133 ..      80     232 ..      73     234 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.091
        PAP2 67 lalllalllrrkrkkiglvllalillllav 96
                ++l+ ++l++ +++   + +l+l+l+l+a+
  CTQ27673.1 58 VVLCGWFLWCLRFRL--RAALILFLILAAA 85
                445555556666666..3444455544444 PP

  == domain 2  score: 103.4 bits;  conditional E-value: 1.8e-33
        PAP2   3 lalllalalaalltsvlKdlvgrpRPfflaeetkldtqvstletses..........................keakesfPSgHsafafalalllalll 75 
                 l+l+ a+++ +  +s++K  v++pRPf+++ e++ +  v++++++++                          ke++  fPSgH++fa+++all+a ll
  CTQ27673.1  80 LILAAAILAGQGAKSWVKARVQEPRPFVIWLENTRQVPVTQFYALKRkeraklvheqlaqaqdipsflrkhwqKETGFAFPSGHTMFAASWALLAAGLL 178
                 3455555555555999*********************************************************************************** PP

        PAP2  76 rrkrkkiglvllalillllavlvalsRlylgvHflsDvlaGlliGialaalayrlvqk 133
                 +++r+      ++++ll++a+ v+ sRl+lg+H++ D+++++li+++l++ a++l q+
  CTQ27673.1 179 WPRRRW----GTIAVLLVWATAVMGSRLALGMHWPLDLIVATLISWLLVTMACWLTQR 232
                 ******....8***************************************99999876 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6  13.0   2.3e-10     1e-06      30     187 ..      43     222 ..      29     225 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 2.3e-10
      PAP2_3  30 vilalaYaslhfqvtllvlvllflrrrerlreflttlllatllgllvyalfPaagPrlleeagfvdtvaaaslag...................alrdg 109
                 +++ ++ + + +++ +++  + ++  r rlr++l+++l++ +  l++  + + + +r+ e+  fv   + ++ +                      +++
  CTQ27673.1  43 WVTETVTQPWGIITHVVLCGWFLWCLRFRLRAALILFLILAAAILAGQGAKSWVKARVQEPRPFVIWLENTRQVPvtqfyalkrkeraklvheqLAQAQ 141
                 66666667788888899999988999999*******************999999997775555555555555555555555555888888887644444 PP

      PAP2_3 110 asravllrgtienglaafPSlHvawal.lvalalwrlrrkr..llrvlalllnvlmivatvatgnHYlvDviaGvalalva 187
                  +  +l ++  ++   afPS H+++a  + +la+  l+++r   + +++l+++ +++ + +a+g H  +D+i++ ++ ++ 
  CTQ27673.1 142 DIPSFLRKHWQKETGFAFPSGHTMFAAsWALLAAGLLWPRRrwGTIAVLLVWATAVMGSRLALGMHWPLDLIVATLISWLL 222
                 44455555555566899*****9765413333333444444112555666677777789***************9998876 PP

>> Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.01        46      10      74 ..      60     141 ..      51     154 .. 0.50
   2 ?    6.1   0.0    0.0023        10       2      43 ..     184     226 ..     183     255 .] 0.73

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.01
  Halogen_Hydrol  10 iavivalvsffllgfsffla....lliailggilvyvasr...........knkkkkhlkk.sglsrk.elkyiretlkeak 74 
                     +  ++++++ f l+  ++l     ++i+++ g+ ++v  r           +n+++  +++   l+rk   k+++e+l++a+
      CTQ27673.1  60 LCGWFLWCLRFRLRAALILFlilaAAILAGQGAKSWVKARvqeprpfviwlENTRQVPVTQfYALKRKeRAKLVHEQLAQAQ 141
                     3333333333333333333321113344555555555555777777777554444444433444444424588888888886 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0023
  Halogen_Hydrol   2 lgwllsiliavivalvsffllgfsfflallia.ilggilvyva 43 
                     +g++ + l+++++++ s ++lg+++ l+l++a +++++lv +a
      CTQ27673.1 184 WGTIAVLLVWATAVMGSRLALGMHWPLDLIVAtLISWLLVTMA 226
                     7899999999******************666666666555443 PP

>> PAP2_C  PAP2 superfamily C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.9      0.98   4.4e+03      31      36 ..      60      65 ..      35      88 .. 0.48
   2 ?   13.4   1.6   1.9e-05     0.084       8      69 ..     161     223 ..     158     230 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.98
      PAP2_C 31 ilkvil 36
                +  ++l
  CTQ27673.1 60 LCGWFL 65
                222222 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.9e-05
      PAP2_C   8 SGHtvvltlavlfi.leyspkklailkvillllallglfliiasrkHYtvDVllglyittlvf 69 
                 SGHt++  + +l++    +p++ + +  +ll++a   + + +a   H+ +D +++ +i+ l++
  CTQ27673.1 161 SGHTMFAASWALLAaGLLWPRRRWGTIAVLLVWATAVMGSRLALGMHWPLDLIVATLISWLLV 223
                 9****998876655056789999877777888888888889999*************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1806.82
//
Query:       CTQ27674.1  [L=102]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-21   73.5   0.9      9e-21   73.5   0.9    1.9  2  LapA_dom  Lipopolysaccharide assembly protein A domain
     0.0093   16.2   3.0       0.44   10.8   0.0    2.2  2  DUF2304   Uncharacterized conserved protein (DUF2304)
     0.0097   16.1   0.3        2.3    8.5   0.0    2.1  2  DUF4148   Domain of unknown function (DUF4148)
  ------ inclusion threshold ------
       0.03   14.1   6.3      0.034   13.9   6.3    1.1  1  Yip1      Yip1 domain
      0.054   13.8   0.8       0.17   12.2   0.0    1.9  2  DUF948    Bacterial protein of unknown function (DUF948)


Domain annotation for each model (and alignments):
>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   3.5       1.1   3.9e+03      20      34 ..       7      21 ..       3      22 .. 0.69
   2 !   73.5   0.9   2.5e-24     9e-21       1      63 [.      23      85 ..      23      86 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
    LapA_dom 20 sllllvafgiGallg 34
                 ll+l+ f+i + lg
  CTQ27674.1  7 FLLVLAIFVISVTLG 21
                567777787777776 PP

  == domain 2  score: 73.5 bits;  conditional E-value: 2.5e-24
    LapA_dom  1 qNtqpVtvnflfaqvelpLsllllvafgiGallgwllslwsylrlrrelrrlkkkikklekel 63
                qN+q+Vt+n+l+aq+e+++s+ll+v f++G+ +gwl++ +++lr r  l r+++kik+le ++
  CTQ27674.1 23 QNDQQVTFNYLLAQGEFRISTLLAVLFAAGFAIGWLICGLFWLRVRVSLARAERKIKRLEHQI 85
                9***********************************************************998 PP

>> DUF2304  Uncharacterized conserved protein (DUF2304)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   1.0    0.0063        23      69      92 ..       3      26 ..       1      37 [. 0.65
   2 !   10.8   0.0   0.00012      0.44      68     101 ..      53      86 ..      39      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0063
     DUF2304 69 llgivfllvilfslslklskleek 92
                +l+i++l++ +f +s++l  ++++
  CTQ27674.1  3 YLLIFLLVLAIFVISVTLGAQNDQ 26
                566666666666666666666554 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00012
     DUF2304  68 fllgivfllvilfslslklskleekikeLaqeiA 101
                 f +g +++ ++ ++  + l + e+kik+L ++iA
  CTQ27674.1  53 FAIGWLICGLFWLRVRVSLARAERKIKRLEHQIA 86 
                 6788899999999999***************998 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00064       2.3       1      29 [.       1      29 [.       1      30 [. 0.84
   2 !    6.0   0.1    0.0038        14       9      29 ..      42      89 ..      38      96 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00064
     DUF4148  1 MkstliaaalaaavaaaaalaahskspkT 29
                Mk +li+++++a++++++ l+a++++++T
  CTQ27674.1  1 MKYLLIFLLVLAIFVISVTLGAQNDQQVT 29
                99999999999999999988866677777 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0038
     DUF4148  9 alaaavaaaaala...........................ahskspkT 29
                + ++av++aa++a                           +h+ +p++
  CTQ27674.1 42 STLLAVLFAAGFAigwlicglfwlrvrvslaraerkikrlEHQIAPVS 89
                445569999999999999999998888777777777777766666665 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   6.3   9.5e-06     0.034      22      83 ..       3      63 ..       1      74 [. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.5e-06
        Yip1 22 pdlallllalltlllgllaslnlgqtlasg.eevqgltlssllgaiiggylglllgllllall 83
                ++l++ll++++ +++++l+++n +q++++   +  +++ s+ll++++++ ++  +g+l+ +l+
  CTQ27674.1  3 YLLIFLLVLAIFVISVTLGAQNDQQVTFNYlLAQGEFRISTLLAVLFAAGFA--IGWLICGLF 63
                7899****************66666666666555678888888888888884..888877664 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.3      0.34   1.2e+03      10      22 ..       8      20 ..       4      29 .. 0.69
   2 ?   12.2   0.0   4.8e-05      0.17       4      46 ..      47      89 ..      45      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.34
      DUF948 10 FvvLviflivvll 22
                ++vL+if+i v l
  CTQ27674.1  8 LLVLAIFVISVTL 20
                4677777776655 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.8e-05
      DUF948  4 lIaAiAFvvLviflivvllklkktldeaaatieelekqvdpil 46
                +++A  F++  +++  + l+++  l +a++ i+ le+q+ p++
  CTQ27674.1 47 VLFAAGFAIGWLICGLFWLRVRVSLARAERKIKRLEHQIAPVS 89
                457778*********************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1216  (0.0678231); expected 358.6 (0.02)
Passed bias filter:                      781  (0.0435607); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 790.86
//
Query:       CTQ27675.1  [L=389]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-15   56.2  19.9      0.029   15.2   0.9    7.8  7  TPR_14           Tetratricopeptide repeat
    1.5e-13   49.7   4.5     0.0072   16.4   0.0    6.6  6  TPR_2            Tetratricopeptide repeat
    2.8e-13   50.1  12.5    2.2e-06   28.1   0.3    4.8  5  TPR_19           Tetratricopeptide repeat
    4.1e-13   48.8   5.9    6.7e-13   48.1   5.9    1.4  1  Rubredoxin_2     Rubredoxin metal binding domain
    1.6e-12   46.5  13.3     0.0058   16.6   0.0    7.1  8  TPR_7            Tetratricopeptide repeat
    7.9e-12   44.4   2.2      0.072   13.3   0.0    6.9  7  TPR_8            Tetratricopeptide repeat
    4.4e-11   43.2   7.1       0.25   12.0   1.5    5.4  5  TPR_16           Tetratricopeptide repeat
    1.5e-10   40.4   2.0       0.15   11.9   0.0    6.1  6  TPR_1            Tetratricopeptide repeat
    1.5e-08   34.8  16.1    0.00023   21.4   0.4    5.3  6  TPR_12           Tetratricopeptide repeat
    8.2e-08   32.4   1.0     0.0017   18.5   0.0    4.6  5  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    2.1e-06   28.0  15.5       0.12   13.1   0.0    7.4  7  TPR_6            Tetratricopeptide repeat
    2.8e-05   24.2   3.2       0.16   12.1   1.3    4.0  3  TPR_9            Tetratricopeptide repeat
    6.3e-05   23.2   0.4         19    6.2   0.1    5.0  4  TPR_4            Tetratricopeptide repeat
    0.00011   21.8   0.0       0.17   11.6   0.0    3.9  3  TPR_11           TPR repeat
    0.00023   21.3   0.2         15    6.3   0.0    4.5  3  TPR_17           Tetratricopeptide repeat
    0.00024   20.8  13.3     0.0053   16.5   2.1    3.1  3  TPR_21           Tetratricopeptide repeat-like domain
    0.00059   19.6   8.4         11    6.1   0.1    6.3  6  TPR_10           Tetratricopeptide repeat
     0.0017   18.6  14.9       0.56   10.6   0.1    5.3  5  TPR_20           Tetratricopeptide repeat
     0.0019   17.8   4.0     0.0071   16.0   2.4    2.4  2  HrpB1_HrpK       Bacterial type III secretion protein (HrpB1_
     0.0093   15.2   0.0      0.018   14.2   0.0    1.4  1  T4SS_TraI        Type IV secretory system, conjugal DNA-prote
  ------ inclusion threshold ------
      0.011   15.3   0.1      0.074   12.6   0.0    2.1  2  RIP              Ribosome inactivating protein
      0.019   15.0   0.6        2.3    8.4   0.0    4.0  5  Rapsyn_N         Rapsyn N-terminal myristoylation and linker 
      0.032   14.5   4.9         14    6.2   0.1    5.2  5  PPR              PPR repeat
      0.097   12.8   1.2        5.7    7.1   0.1    3.1  3  Leuk-A4-hydro_C  Leukotriene A4 hydrolase, C-terminal
        0.1   13.4   0.2       0.18   12.6   0.2    1.4  1  zinc_ribbon_15   zinc-ribbon family
       0.14   12.7   0.1       0.46   11.0   0.0    2.0  2  SPG48            AP-5 complex subunit, vesicle trafficking
       0.23   11.2   1.9         13    5.7   0.1    2.4  2  Zn_Tnp_IS1       InsA N-terminal domain
       0.34   10.9   3.6       0.95    9.5   3.6    1.7  1  zf-CCHC_3        Zinc knuckle
       0.74   10.0   2.6        1.8    8.7   2.6    1.7  1  Zn-ribbon_8      Zinc ribbon domain


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.039        24      14      42 ..      48      76 ..      34      78 .. 0.87
   2 !    8.2   0.0    0.0082       5.1       1      24 [.      69      92 ..      69      99 .. 0.90
   3 !   11.6   0.3   0.00065       0.4       3      29 ..     109     135 ..     107     140 .. 0.90
   4 !    9.3   0.1    0.0037       2.3       3      31 ..     143     171 ..     141     177 .. 0.91
   5 !   15.2   0.9   4.7e-05     0.029       3      43 ..     182     222 ..     180     223 .. 0.92
   6 !   12.2   0.0   0.00042      0.26       6      33 ..     219     246 ..     215     258 .. 0.87
   7 !    8.8   0.1    0.0053       3.3       3      40 ..     284     321 ..     282     322 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.039
      TPR_14 14 lGdpdeAiallrralalaPddaeawllla 42
                + + d+A++l+ ++l+ + +  ea+l l+
  CTQ27675.1 48 SNQQDKAVDLFLDMLKEDTGTVEAHLTLG 76
                6789********************99887 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0082
      TPR_14  1 peallalaeallalGdpdeAiall 24
                +ea+l l+ +++ +G+ d+Ai++ 
  CTQ27675.1 69 VEAHLTLGNLFRSRGEVDRAIRIH 92
                589******************975 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00065
      TPR_14   3 allalaeallalGdpdeAiallrrala 29 
                 a ++l++ ++a+G +d+A+++++++++
  CTQ27675.1 109 AVQQLGRDYMAAGLYDRAEDMFKQLVD 135
                 6789*******************9876 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.0037
      TPR_14   3 allalaeallalGdpdeAiallrralala 31 
                 al++l++++ a  d++ Ai++++r+++l+
  CTQ27675.1 143 ALQQLLQIYQATSDWQSAIEVAERLVKLG 171
                 899**********************9986 PP

  == domain 5  score: 15.2 bits;  conditional E-value: 4.7e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                  + +la   +a+ d+d+A+allr+  a++ ++a++ +++++
  CTQ27675.1 182 FWCELALQQMAANDLDKAMALLRKGAAADRNSARVSIMMGR 222
                 5778999****************************999997 PP

  == domain 6  score: 12.2 bits;  conditional E-value: 0.00042
      TPR_14   6 alaeallalGdpdeAiallrralalaPd 33 
                 +++++ ++ Gd+++A++ l+r+++++ +
  CTQ27675.1 219 MMGRVWMEKGDYAKAVESLERVIDQDKE 246
                 789*********************9876 PP

  == domain 7  score: 8.8 bits;  conditional E-value: 0.0053
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawll 40 
                 a l+la++l++++  ++A ++  r l+++P+ ++++ l
  CTQ27675.1 284 AELMLAQILEQREGVEAAQNYVTRQLERHPTMRVFHKL 321
                 679****************************9988865 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       1.5   9.5e+02       8      31 ..      42      65 ..      39      67 .. 0.81
   2 ?    5.5   0.0     0.035        22       2      22 ..      70      90 ..      69      91 .. 0.93
   3 !    8.7   0.1    0.0033         2       6      28 ..     112     134 ..     108     137 .. 0.90
   4 ?    3.8   0.0      0.13        78      10      30 ..     150     170 ..     149     173 .. 0.90
   5 !    9.2   0.8    0.0023       1.4       1      33 [.     180     212 ..     180     213 .. 0.90
   6 !   16.4   0.0   1.2e-05    0.0072       5      32 ..     218     245 ..     214     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1.5
       TPR_2  8 GlayyklgdyeeAleafekAleld 31
                G   + +++ ++A+++f   l+ d
  CTQ27675.1 42 GVNFLLSNQQDKAVDLFLDMLKED 65
                6777888999*******9888765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.035
       TPR_2  2 ealynlGlayyklgdyeeAle 22
                ea+  lG++ + +g+ ++A++
  CTQ27675.1 70 EAHLTLGNLFRSRGEVDRAIR 90
                89*****************96 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0033
       TPR_2   6 nlGlayyklgdyeeAleafekAl 28 
                 +lG+ y+++g y++A++ f++ +
  CTQ27675.1 112 QLGRDYMAAGLYDRAEDMFKQLV 134
                 79*****************9976 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.13
       TPR_2  10 ayyklgdyeeAleafekAlel 30 
                 +y +  d++ A+e  e+ ++l
  CTQ27675.1 150 IYQATSDWQSAIEVAERLVKL 170
                 799999************998 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.0023
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a  +++l+l  ++++d+++A ++++k  + d n
  CTQ27675.1 180 ANFWCELALQQMAANDLDKAMALLRKGAAADRN 212
                 578***********************9888766 PP

  == domain 6  score: 16.4 bits;  conditional E-value: 1.2e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldP 32 
                  ++G++++++gdy++A+e +e+++  d 
  CTQ27675.1 218 IMMGRVWMEKGDYAKAVESLERVIDQDK 245
                 679********************99886 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00013     0.083       5      57 ..      49     101 ..      45     113 .. 0.87
   2 !   10.4   0.8    0.0011       0.7       2      52 ..     118     168 ..     117     175 .. 0.91
   3 !   28.1   0.3   3.6e-09   2.2e-06       2      56 ..     191     245 ..     190     257 .. 0.95
   4 !   12.4   0.3   0.00028      0.18       2      68 .]     225     291 ..     225     291 .. 0.83
   5 ?    3.4   0.2      0.18   1.1e+02      20      57 ..     278     314 ..     252     323 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00013
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 ++ + A++l+  +l+ed +  ea l L ++  + g++d A+++ + l+e++  
  CTQ27675.1  49 NQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQSLMESASL 101
                 66789**************************************9999998766 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0011
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 +a+g y++A ++++q+ +e    + a+ +L +++ a+ +++ A+++ ++l 
  CTQ27675.1 118 MAAGLYDRAEDMFKQLVDETDFRLGALQQLLQIYQATSDWQSAIEVAERLV 168
                 79999**********9999888999999*****************998886 PP

  == domain 3  score: 28.1 bits;  conditional E-value: 3.6e-09
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                 +a++d++ A+all++  ++d ++a++ + + ++ ++ g++++A + L+++ ++d+
  CTQ27675.1 191 MAANDLDKAMALLRKGAAADRNSARVSIMMGRVWMEKGDYAKAVESLERVIDQDK 245
                 799*************************************************997 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.00028
      TPR_19   2 laegdyaeAlalleqalqedpk.naearllLAeallalgqldeAealLdalpeedpddaryasLlAkl 68 
                 ++ gdya A++ le+++++d +  +e +  L  ++ +lg +de e  L +  ee++  a +   lA++
  CTQ27675.1 225 MEKGDYAKAVESLERVIDQDKElVGETLEMLQTCYQQLGKTDEWEVFLRRCVEENAG-ATAELMLAQI 291
                 688****************9996444444578888888*****99999999999998.8887778876 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.18
      TPR_19  20 edpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 e++  a a l LA++l +   +++A++ + + +e  p 
  CTQ27675.1 278 ENA-GATAELMLAQILEQREGVEAAQNYVTRQLERHPT 314
                 433.3445556899999998888888888888877775 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   5.9   1.1e-15   6.7e-13       1      28 []     355     382 ..     355     382 .. 0.99

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 1.1e-15
  Rubredoxin_2   1 YvCsqCGfesakwfGrCpsCgsWntlke 28 
                   Y+C++CGf++++++++CpsC+sW t+k+
    CTQ27675.1 355 YRCQKCGFTAHTLYWHCPSCRSWATIKP 382
                   9*************************98 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       6.5     4e+03      13      26 ..      49      62 ..      46      67 .. 0.77
   2 !   13.4   0.0   9.7e-05      0.06       1      27 [.      71      97 ..      71     106 .. 0.79
   3 !    8.5   0.1    0.0037       2.3       4      29 ..     112     135 ..     109     141 .. 0.85
   4 !    8.0   0.1    0.0052       3.2       3      24 ..     145     166 ..     143     176 .. 0.81
   5 ?    1.0   0.1      0.86   5.3e+02       9      30 ..     190     209 ..     177     215 .. 0.60
   6 !   16.6   0.0   9.4e-06    0.0058       5      32 ..     220     245 ..     218     248 .. 0.90
   7 ?    0.8   0.0         1   6.4e+02       2      17 ..     252     267 ..     251     269 .. 0.82
   8 ?   -1.7   0.1       6.5     4e+03       5      27 ..     288     310 ..     286     314 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 6.5
       TPR_7 13 GdyeeAielyeqsL 26
                ++ ++A++l+  +L
  CTQ27675.1 49 NQQDKAVDLFLDML 62
                66799**9998744 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 9.7e-05
       TPR_7  1 aLlnLarlysrlGdyeeAielyeqsLa 27
                a+l L++l++++G+ ++Ai++++ +++
  CTQ27675.1 71 AHLTLGNLFRSRGEVDRAIRIHQSLME 97
                5788******************98433 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0037
       TPR_7   4 nLarlysrlGdyeeAielyeqsLalt 29 
                 +L+r y + G y++A++ ++q   ++
  CTQ27675.1 112 QLGRDYMAAGLYDRAEDMFKQ--LVD 135
                 699******************..555 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0052
       TPR_7   3 lnLarlysrlGdyeeAielyeq 24 
                  +L ++y++  d++ Aie+ e+
  CTQ27675.1 145 QQLLQIYQATSDWQSAIEVAER 166
                 56668*************9998 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.86
       TPR_7   9 ysrlGdyeeAielyeqsLaltk 30 
                 + + +d ++A  l+++  + + 
  CTQ27675.1 190 QMAANDLDKAMALLRK--GAAA 209
                 3446777777777777..5555 PP

  == domain 6  score: 16.6 bits;  conditional E-value: 9.4e-06
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltkdp 32 
                 ++r++ + Gdy++A+e +e+  +++ d 
  CTQ27675.1 220 MGRVWMEKGDYAKAVESLER--VIDQDK 245
                 8*******************..888775 PP

  == domain 7  score: 0.8 bits;  conditional E-value: 1
       TPR_7   2 LlnLarlysrlGdyee 17 
                 L  L  +y++lG+++e
  CTQ27675.1 252 LEMLQTCYQQLGKTDE 267
                 6678889999999986 PP

  == domain 8  score: -1.7 bits;  conditional E-value: 6.5
       TPR_7   5 LarlysrlGdyeeAielyeqsLa 27 
                 La++ +++   e A  + +++L+
  CTQ27675.1 288 LAQILEQREGVEAAQNYVTRQLE 310
                 78888887777888888888664 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       1.1   6.8e+02       2      21 ..      70      89 ..      69      91 .. 0.90
   2 ?    3.0   0.0      0.24   1.5e+02       6      28 ..     112     134 ..     109     136 .. 0.86
   3 ?    4.3   0.1     0.095        59       3      30 ..     143     170 ..     141     172 .. 0.92
   4 ?    5.1   0.2     0.051        32       2      33 ..     181     212 ..     180     213 .. 0.85
   5 !   13.3   0.0   0.00012     0.072       2      32 ..     215     245 ..     214     247 .. 0.85
   6 !    9.3   0.0    0.0023       1.4      10      30 ..     258     278 ..     257     281 .. 0.91
   7 ?   -1.1   0.0         5   3.1e+03       6      28 ..     287     309 ..     286     313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 1.1
                CHHHHHHHHHHHTT-HHHHH CS
       TPR_8  2 eayynlgsiylklgdyeeAk 21
                ea++ lg++ ++ g+ + A+
  CTQ27675.1 70 EAHLTLGNLFRSRGEVDRAI 89
                78999***********9998 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.24
                 HHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekal 28 
                 +lg+ y+  g y+ A+  +++ +
  CTQ27675.1 112 QLGRDYMAAGLYDRAEDMFKQLV 134
                 67777999***********9986 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.095
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekalel 30 
                 a+++l +iy+ + d ++A+e+ e+ ++l
  CTQ27675.1 143 ALQQLLQIYQATSDWQSAIEVAERLVKL 170
                 7899*******************99987 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.051
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                   ++ l++  +  +d+++A++ ++k   +d++
  CTQ27675.1 181 NFWCELALQQMAANDLDKAMALLRKGAAADRN 212
                 5789999999999************8877765 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 0.00012
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldp 32 
                 ++  ++g++ +++gdy +A+e++e++++ d+
  CTQ27675.1 215 RVSIMMGRVWMEKGDYAKAVESLERVIDQDK 245
                 55678888889***************99876 PP

  == domain 6  score: 9.3 bits;  conditional E-value: 0.0023
                 HHHHTT-HHHHHHHHHHHHHH CS
       TPR_8  10 iylklgdyeeAkeyyekalel 30 
                 +y++lg+ +e++ ++++++e 
  CTQ27675.1 258 CYQQLGKTDEWEVFLRRCVEE 278
                 69****************996 PP

  == domain 7  score: -1.1 bits;  conditional E-value: 5
                 HHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekal 28 
                 +l++i+++ +  e+A+ y  + l
  CTQ27675.1 287 MLAQILEQREGVEAAQNYVTRQL 309
                 89999999888899988876665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.014       8.9      15      54 ..      53      89 ..      48      95 .. 0.85
   2 !   10.9   0.2   0.00092      0.57       3      27 ..     113     137 ..     112     144 .. 0.92
   3 !   12.0   1.5    0.0004      0.25       5      66 ..     149     210 ..     146     214 .. 0.82
   4 !    7.8   0.0    0.0087       5.3       3      28 ..     220     245 ..     218     247 .. 0.80
   5 ?    2.8   0.0       0.3   1.9e+02       1      28 [.     286     313 ..     286     341 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.014
      TPR_16 15 dAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54
                +A+ ++   lk d     ++eA+l lg+++  +g++++A+
  CTQ27675.1 53 KAVDLFLDMLKED---TGTVEAHLTLGNLFRSRGEVDRAI 89
                6777777777777...78999******************8 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00092
      TPR_16   3 laraalragdyddAaaaleaalkrd 27 
                 l+r++++ag yd+A+ +++++++  
  CTQ27675.1 113 LGRDYMAAGLYDRAEDMFKQLVDET 137
                 89*******************9876 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.0004
      TPR_16   5 raalragdyddAaaaleaalkrdpssPd..aaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 +++ +  d++ A++++e+++k++++  +   a ++ +l++   ++++l++A al+r+  +aa+d
  CTQ27675.1 149 QIYQATSDWQSAIEVAERLVKLGKEKHRgeIANFWCELALQQMAANDLDKAMALLRK--GAAAD 210
                 6899999****************7776677888888888888888***********9..44443 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0087
      TPR_16   3 laraalragdyddAaaaleaalkrdp 28 
                 ++r  ++ gdy++A++ le+++++d+
  CTQ27675.1 220 MGRVWMEKGDYAKAVESLERVIDQDK 245
                 56666788999999999999999985 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.3
      TPR_16   1 lalaraalragdyddAaaaleaalkrdp 28 
                 l+la+++ ++   ++A+++ ++ l+r+p
  CTQ27675.1 286 LMLAQILEQREGVEAAQNYVTRQLERHP 313
                 799*****************99999994 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0074       4.6       2      21 ..      70      89 ..      69      91 .. 0.93
   2 ?    5.7   0.2     0.022        14       7      26 ..     113     132 ..     111     134 .. 0.92
   3 ?   -0.9   0.0       2.7   1.6e+03      14      30 ..     147     163 ..     142     166 .. 0.62
   4 !    7.2   0.5    0.0076       4.7       1      27 [.     180     206 ..     180     213 .. 0.87
   5 !   11.9   0.0   0.00024      0.15       7      31 ..     220     244 ..     214     247 .. 0.88
   6 ?    0.5   0.0      0.98     6e+02      10      19 ..     258     267 ..     257     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0074
                HHHHHHHHHHHHTT-HHHHH CS
       TPR_1  2 kalynlGnayfklgkydeAl 21
                +a+  lGn++++ g+ d A+
  CTQ27675.1 70 EAHLTLGNLFRSRGEVDRAI 89
                8999***************9 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.022
                 HHHHHHHTT-HHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyek 26 
                 lG  y+  g yd A++ +++
  CTQ27675.1 113 LGRDYMAAGLYDRAEDMFKQ 132
                 8999*************997 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 2.7
                 TT-HHHHHHHHHHHHHH CS
       TPR_1  14 lgkydeAleyyekALel 30 
                 l +  +A  + + A+e+
  CTQ27675.1 147 LLQIYQATSDWQSAIEV 163
                 55566666666777765 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0076
                 HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekA 27 
                 a+ ++ l++  +  +++d+A +  +k 
  CTQ27675.1 180 ANFWCELALQQMAANDLDKAMALLRKG 206
                 678******************999886 PP

  == domain 5  score: 11.9 bits;  conditional E-value: 0.00024
                 HHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   7 lGnayfklgkydeAleyyekALeln 31 
                 +G + +++g+y +A+e  e+++  +
  CTQ27675.1 220 MGRVWMEKGDYAKAVESLERVIDQD 244
                 788999****************987 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.98
                 HHHHTT-HHH CS
       TPR_1  10 ayfklgkyde 19 
                 +y++lgk de
  CTQ27675.1 258 CYQQLGKTDE 267
                 9******987 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       4.4   2.7e+03      52      68 ..      42      58 ..      26      62 .. 0.84
   2 !   21.4   0.4   3.8e-07   0.00023       5      71 ..      71     133 ..      67     135 .. 0.89
   3 !    7.3   1.9    0.0094       5.8      10      76 ..     148     211 ..     139     212 .. 0.81
   4 !   12.3   0.2   0.00026      0.16      22      76 ..     192     245 ..     178     246 .. 0.86
   5 !   11.0   0.0   0.00066      0.41      11      54 ..     222     265 ..     213     277 .. 0.75
   6 ?    1.0   0.7      0.83   5.2e+02      45      68 ..     282     305 ..     247     313 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 4.4
      TPR_12 52 grlyralgryeeAlell 68
                g  +++++++++A++l+
  CTQ27675.1 42 GVNFLLSNQQDKAVDLF 58
                66678899999999998 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 3.8e-07
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 a+  l+++ r +g+ d A+++++  +e a+ +    +++ + + + Lgr y a+g y+ A++++++ 
  CTQ27675.1  71 AHLTLGNLFRSRGEVDRAIRIHQSLMESASLT----YDQRLLAVQQLGRDYMAAGLYDRAEDMFKQL 133
                 4558*************************766....446999***********************96 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0094
      TPR_12  10 aavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                  +++++  +++ A+e  e+ + + ++    ++ + a+  + L+  + a++++++A +ll++  a+++
  CTQ27675.1 148 LQIYQATSDWQSAIEVAERLVKLGKEK---HRGEIANFWCELALQQMAANDLDKAMALLRKGAAADR 211
                 568999999999999999999999665...4557999999999998899999999999998877765 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 0.00026
      TPR_12  22 AlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 A   l+ka+++ r+    d+ + a++ + +gr+  + g+y++A+e le++++ ++
  CTQ27675.1 192 AANDLDKAMALLRKGAAADR-NSARVSIMMGRVWMEKGDYAKAVESLERVIDQDK 245
                 6678999*****99888888.9***********4488************998665 PP

  == domain 5  score: 11.0 bits;  conditional E-value: 0.00066
      TPR_12  11 avlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrl 54 
                  v ++ g+y++A e le+++++ ++l G++ + + t+++ Lg +
  CTQ27675.1 222 RVWMEKGDYAKAVESLERVIDQDKELVGETLEMLQTCYQQLGKT 265
                 55567899999999999998888888777777777777776654 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.83
      TPR_12  45 attlrnLgrlyralgryeeAlell 68 
                 at+   L++++++++  e+A+++ 
  CTQ27675.1 282 ATAELMLAQILEQREGVEAAQNYV 305
                 455555555555555555555554 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.059        36       4      61 ..      50     108 ..      47     131 .. 0.77
   2 ?    4.8   0.1     0.054        33      21      79 ..     105     164 ..      92     166 .. 0.75
   3 !   18.5   0.0   2.8e-06    0.0017       3      81 ..     155     239 ..     153     240 .. 0.88
   4 !   12.8   0.1   0.00017      0.11       8      76 ..     180     269 ..     173     275 .. 0.70
   5 ?    2.4   0.0       0.3   1.9e+02      22      76 ..     281     333 ..     261     335 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.059
                 -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHH CS
      ANAPC3   4 nyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcryl 61 
                 + ++A+ l+  +l+ +t   e+ + l+  + ++g+ +rA+++ +++ +++s +   r+l
  CTQ27675.1  50 QQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQSLmESASLTYDQRLL 108
                 55666666666777888888999999***************999986655555555555 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.054
                 --HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  21 espedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79 
                 +++ ++  l+  +  +g y+rA + ++++ ++ +  lg++  + q + + + ++ Ai + 
  CTQ27675.1 105 QRLLAVQQLGRDYMAAGLYDRAEDMFKQLvDETDFRLGALQQLLQIYQATSDWQSAIEVA 164
                 566677778888899999999999999987777777788877778877778888877765 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 2.8e-06
                 T-HHHHHHHHHHHH....HHH--HHHHHH..HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   3 nnyknAiflaerlla...aetespedayl..lAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                  ++++Ai +aerl++    +++ + + ++  lAl    +++ ++A+ llrk    + +s ++ + ++++  + + y +A+  Le+
  CTQ27675.1 155 SDWQSAIEVAERLVKlgkEKHRGEIANFWceLALQQMAANDLDKAMALLRKGaAADRNSARVSIMMGRVWMEKGDYAKAVESLER 239
                 679***********644355666667888778********************9***************************99997 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 0.00017
                 HHHHHHHHH....................HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHH.HTT-HHHHH CS
      ANAPC3   8 Aiflaerll...................aaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcll.kLkkyeeAi 76 
                 A f++e++l                   aa+++s+  + + + +  + g+y +A e l++  +++++  g  + + q+++ +L+k +e +
  CTQ27675.1 180 ANFWCELALqqmaandldkamallrkgaAADRNSARVSIMMGRVWMEKGDYAKAVESLERViDQDKELVGETLEMLQTCYqQLGKTDEWE 269
                 55666666666666666666655555447888888889999********************88888888555555555553889999855 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.3
                 -HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3  22 spedayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAi 76 
                  + + ++lA+ l +++  + A++++ +    ++++  r+ +    + L++ ee++
  CTQ27675.1 281 GATAELMLAQILEQREGVEAAQNYVTRQ--LERHPTMRVFHKLMDYHLNEAEEGR 333
                 55677889****************9999..8999999999999999999999987 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       4.3   2.7e+03      11      23 ..      46      58 ..      35      64 .. 0.73
   2 ?    3.1   0.0      0.29   1.8e+02       1      22 [.      70      91 ..      70      99 .. 0.84
   3 ?    7.0   0.2     0.016        10       5      29 ..     112     136 ..     109     136 .. 0.91
   4 ?    4.4   0.1      0.11        67      13      28 ..     149     169 ..     139     170 .. 0.71
   5 ?    3.0   0.5      0.31   1.9e+02       6      25 ..     186     205 ..     185     205 .. 0.82
   6 !   13.1   0.0   0.00019      0.12       5      29 ..     219     243 ..     217     244 .. 0.90
   7 ?   -0.9   0.0       5.5   3.4e+03       9      26 ..     258     275 ..     257     280 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 4.3
                HHHHHHHHHHHHH CS
       TPR_6 11 rklgdtdkAleal 23
                +  ++ dkA++++
  CTQ27675.1 46 LLSNQQDKAVDLF 58
                444699****988 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.29
                HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  1 dAlyklalsyrklgdtdkAlea 22
                +A + l+ ++r+ g+ d+A+++
  CTQ27675.1 70 EAHLTLGNLFRSRGEVDRAIRI 91
                688999******99******97 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlike 29 
                 +l++ y ++g +d+A +++++l++e
  CTQ27675.1 112 QLGRDYMAAGLYDRAEDMFKQLVDE 136
                 6899999*99************986 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.11
                 H.....HHHHHHHHHHHHHHH CS
       TPR_6  13 l.....gdtdkAlealerlik 28 
                 +      d++ A+e  erl+k
  CTQ27675.1 149 QiyqatSDWQSAIEVAERLVK 169
                 2444437************97 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealer 25 
                 lal + +++d dkA+++l++
  CTQ27675.1 186 LALQQMAANDLDKAMALLRK 205
                 566677789********986 PP

  == domain 6  score: 13.1 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlike 29 
                 ++++   + gd++kA+e ler+i++
  CTQ27675.1 219 MMGRVWMEKGDYAKAVESLERVIDQ 243
                 5899999988*************86 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 5.5
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAlealerl 26 
                 +y++lg+td+    l+r+
  CTQ27675.1 258 CYQQLGKTDEWEVFLRRC 275
                 899999999755555555 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   1.3   0.00026      0.16       1      67 [.     147     211 ..     147     219 .. 0.76
   2 !    8.2   0.0    0.0044       2.8      36      60 ..     221     245 ..     219     257 .. 0.86
   3 ?   -1.0   0.0       3.1   1.9e+03      36      59 ..     289     312 ..     285     322 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00026
       TPR_9   1 lkaiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaea 67 
                 l +i++   dw+ a++v+erl+ l  + +  r + +    +l   + A++dL+ ++al  + ++a++
  CTQ27675.1 147 LLQIYQATSDWQSAIEVAERLVKLGKEKH--RGEIANFWCELALQQMAANDLDKAMALLRKGAAADR 211
                 5689********************98884..567777777777777777777777777765555554 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0044
       TPR_9  36 GlllaqlGclsaAladLeaylalap 60 
                 G++ ++ G++++A++ Le+ ++++ 
  CTQ27675.1 221 GRVWMEKGDYAKAVESLERVIDQDK 245
                 88999****************9985 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3.1
       TPR_9  36 GlllaqlGclsaAladLeaylala 59 
                 +++l+q++ ++aA +   + l+  
  CTQ27675.1 289 AQILEQREGVEAAQNYVTRQLERH 312
                 445555555555544444444433 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       1.5   9.4e+02       2      20 ..      70      88 ..      69      91 .. 0.84
   2 ?    3.6   0.1      0.22   1.4e+02       7      24 ..     113     130 ..     112     132 .. 0.89
   3 ?    6.2   0.1     0.031        19       7      25 ..     186     204 ..     181     205 .. 0.91
   4 ?    5.8   0.0     0.044        27       1      26 []     214     239 ..     214     239 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 1.5
       TPR_4  2 rallaLArallalGdldeA 20
                 a+l L+ +   +G+ d+A
  CTQ27675.1 70 EAHLTLGNLFRSRGEVDRA 88
                5899999999999999998 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.22
       TPR_4   7 LArallalGdldeArall 24 
                 L+r + a+G +d+A++++
  CTQ27675.1 113 LGRDYMAAGLYDRAEDMF 130
                 899************986 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.031
       TPR_4   7 LArallalGdldeAralle 25 
                 LA  + a+ dld A all+
  CTQ27675.1 186 LALQQMAANDLDKAMALLR 204
                 9999**************9 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.044
       TPR_4   1 arallaLArallalGdldeAraller 26 
                 ar+ ++++r++ + Gd++ A + ler
  CTQ27675.1 214 ARVSIMMGRVWMEKGDYAKAVESLER 239
                 5777999***************9997 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.066        41       1      14 [.      76      89 ..      76      90 .. 0.95
   2 ?    0.8   0.0      0.64     4e+02       6      29 ..     192     215 ..     190     217 .. 0.86
   3 !   11.6   0.0   0.00028      0.17       1      26 [.     221     246 ..     221     248 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.066
      TPR_11  1 GdayyeqGkyeeAi 14
                G++++++G+ + Ai
  CTQ27675.1 76 GNLFRSRGEVDRAI 89
                9************9 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.64
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnae 29 
                 + +++++A++ ++k  + d ++a+
  CTQ27675.1 192 AANDLDKAMALLRKGAAADRNSAR 215
                 5689*********99999998886 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00028
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPd 26 
                 G++ +e+G+y +A+e++++ ++ d +
  CTQ27675.1 221 GRVWMEKGDYAKAVESLERVIDQDKE 246
                 667789****************9975 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0      0.04        25      13      33 ..      69      89 ..      57      90 .. 0.83
   2 ?    3.9   0.1      0.14        86      13      32 ..     180     199 ..     174     201 .. 0.91
   3 ?    6.3   0.0     0.024        15       2      34 .]     203     235 ..     202     235 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.04
      TPR_17 13 adaynnLAelllknGdlmtAr 33
                ++a+  L++l++++G+ ++A+
  CTQ27675.1 69 VEAHLTLGNLFRSRGEVDRAI 89
                799****************97 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.14
      TPR_17  13 adaynnLAelllknGdlmtA 32 
                 a+++++LA  +  ++dl++A
  CTQ27675.1 180 ANFWCELALQQMAANDLDKA 199
                 899**************998 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.024
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 ++k ++ d n+a +  ++++++ ++Gd+++A++
  CTQ27675.1 203 LRKGAAADRNSARVSIMMGRVWMEKGDYAKAVE 235
                 578889999*********************975 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.4    0.0011      0.69      11     138 ..       7     132 ..       4     140 .. 0.83
   2 !   16.5   2.1   8.6e-06    0.0053      51     141 ..     153     242 ..     141     268 .. 0.70
   3 ?    1.2   0.2      0.42   2.6e+02     108     138 ..     277     307 ..     263     317 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
      TPR_21  11 ilvgvvlalvglaGwqgwqdyqeeqaeeAsalYqqlqeaveakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakde 109
                 +l+ v++a + ++G +  q+++++ a++ s  Y + ++ + +++++ka +++ ++ +e  gt     a+L l +   ++g++++A    ++++e+a+ +
  CTQ27675.1   7 LLLPVAAAYGWYMGRRSAQQSKQDDASRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGT---VEAHLTLGNLFRSRGEVDRAIRIHQSLMESASLT 102
                 56678888888888888888888899999999999888888999999999999999999999...8999****************99999999988766 PP

      TPR_21 110 elka.larlRLarvllaekkydeAlktLea 138
                   ++ la  +L r ++a++ yd+A  + ++
  CTQ27675.1 103 YDQRlLAVQQLGRDYMAAGLYDRAEDMFKQ 132
                 544416778999999999999999877665 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 8.6e-06
      TPR_21  51 eakdaakakeaaeeladeyggtaYaalaaL..llAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakke 141
                 +++d ++a e ae+l++  ++++ +++a++   lA ++++a+dl++A a L++ ++  ++    a +++ + rv +++++y++A++ Le++ +
  CTQ27675.1 153 ATSDWQSAIEVAERLVKLGKEKHRGEIANFwcELALQQMAANDLDKAMALLRKGAAADRNS---ARVSIMMGRVWMEKGDYAKAVESLERVID 242
                 3556667777788888877777777777763357889999999999999998888777666...45666788889999999999998887654 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.42
      TPR_21 108 deelkalarlRLarvllaekkydeAlktLea 138
                 +e+  a a+l La++l + + +++A + +++
  CTQ27675.1 277 EENAGATAELMLAQILEQREGVEAAQNYVTR 307
                 5666777888888888888888888776654 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.047        29       8      26 ..      75      93 ..      73      98 .. 0.87
   2 ?    6.1   0.1     0.018        11       8      28 ..     113     133 ..     109     135 .. 0.90
   3 ?    0.7   0.1      0.87   5.4e+02      13      36 ..     145     168 ..     142     176 .. 0.63
   4 ?    0.6   0.2      0.95   5.8e+02      14      27 ..     192     205 ..     178     209 .. 0.62
   5 ?    5.1   0.0     0.035        22       8      37 ..     220     249 ..     218     251 .. 0.83
   6 ?   -0.4   0.0       1.9   1.2e+03      12      30 ..     259     277 ..     259     277 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.047
      TPR_10  8 LanalrqrgrydeAealle 26
                L+n+ r+rg+ d+A ++++
  CTQ27675.1 75 LGNLFRSRGEVDRAIRIHQ 93
                9**************9965 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.018
      TPR_10   8 LanalrqrgrydeAealleea 28 
                 L++ + + g yd+Ae+++++ 
  CTQ27675.1 113 LGRDYMAAGLYDRAEDMFKQL 133
                 9****************9985 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.87
      TPR_10  13 rqrgrydeAealleealairrrll 36 
                 +q+ +  +A  + + a+++ +rl+
  CTQ27675.1 145 QQLLQIYQATSDWQSAIEVAERLV 168
                 555555566666677777777776 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.95
      TPR_10  14 qrgrydeAeallee 27 
                 + +++d+A+all++
  CTQ27675.1 192 AANDLDKAMALLRK 205
                 33455555555544 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.035
      TPR_10   8 LanalrqrgrydeAealleealairrrllG 37 
                 ++++  + g+y++A++ le++++  ++l+G
  CTQ27675.1 220 MGRVWMEKGDYAKAVESLERVIDQDKELVG 249
                 6899999*************9975555555 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 1.9
      TPR_10  12 lrqrgrydeAealleeala 30 
                 ++q+g+ de e +l+++++
  CTQ27675.1 259 YQQLGKTDEWEVFLRRCVE 277
                 89*******9999999986 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.2    0.0077       4.8      26      77 ..      39      88 ..      21      99 .. 0.75
   2 ?    2.9   0.1      0.23   1.4e+02      40      57 ..     142     159 ..     131     170 .. 0.86
   3 ?    5.5   1.2     0.034        21      26      55 ..     184     213 ..     180     219 .. 0.85
   4 !   10.6   0.1   0.00091      0.56      11      83 ..     203     274 ..     200     278 .. 0.87
   5 ?    1.6   0.1      0.56   3.5e+02      15      74 ..     275     348 ..     261     358 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0077
      TPR_20 26 ldlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealgsqdpl 77
                +      l  +++++A++++l++lk+d +    +a  +l  +f + g+ d +
  CTQ27675.1 39 YVAGVNFLLSNQQDKAVDLFLDMLKEDTGT--VEAHLTLGNLFRSRGEVDRA 88
                55566678899**************99987..77888888888888887755 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.23
      TPR_20  40 eAleqLleilkrdrkwed 57 
                  Al+qLl+i +++++w+ 
  CTQ27675.1 142 GALQQLLQIYQATSDWQS 159
                 69************9974 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.034
      TPR_20  26 ldlAlallaagryeeAleqLleilkrdrkw 55 
                 ++lAl+++aa++ ++A+++L +  ++dr+ 
  CTQ27675.1 184 CELALQQMAANDLDKAMALLRKGAAADRNS 213
                 68***************9998877777775 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00091
      TPR_20  11 leaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealgsqdplvakyRr 83 
                 l++ +aa+ +     + + ++ +++g+y++A+e L +++ +d++   ++  + l    + lg++d++ +  Rr
  CTQ27675.1 203 LRKGAAADRNSARVSIMMGRVWMEKGDYAKAVESLERVIDQDKEL-VGETLEMLQTCYQQLGKTDEWEVFLRR 274
                 7888899999999999**************************998.788888899999999999987666665 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.56
      TPR_20  15 laanpddldarldlAlallaagryeeAleqLleilkrdrkw..............eddaarkqllkifealgsq 74 
                 + ++ +   a+l lA+ l +++ +e+A +   + l+r+ +               e+++a++ l  + +++g+q
  CTQ27675.1 275 CVEENAGATAELMLAQILEQREGVEAAQNYVTRQLERHPTMrvfhklmdyhlneaEEGRAKESLGVLRNMVGEQ 348
                 55555566888999999999999999999988888888887777777777777777788887777777777666 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.94   5.8e+02      45      84 ..      69     107 ..      42     116 .. 0.76
   2 !   16.0   2.4   1.1e-05    0.0071      17     124 ..     186     295 ..     174     297 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.94
  HrpB1_HrpK  45 aeldllegvlliergrweeAlrlLreveaeasgtpyakaL 84 
                 +e++l  g+l  +rg+++ A+r+ +++ ++as   y + L
  CTQ27675.1  69 VEAHLTLGNLFRSRGEVDRAIRIHQSLMESAS-LTYDQRL 107
                 5667777888889999******9999996554.4455555 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.1e-05
  HrpB1_HrpK  17 vlslalasedtedaellLdalrvLrPevaeldllegvlliergrweeAlrlLreveaeas.gtpyakaLlAlcLaal.rDeeWrayAeevlesdadpda 113
                 ++ + +a++d + a +lL+   +   + a + ++ g +++e+g+++ A+  L+ v ++ +       ++l  c ++l + +eW +    ++e++a+++a
  CTQ27675.1 186 LALQQMAANDLDKAMALLRKGAAADRNSARVSIMMGRVWMEKGDYAKAVESLERVIDQDKeLVGETLEMLQTCYQQLgKTDEWEVFLRRCVEENAGATA 284
                 5555667788888888888888888899999***********************9954441344455566666665516789**************999 PP

  HrpB1_HrpK 114 laLvkaLeara 124
                   +++++ ++ 
  CTQ27675.1 285 ELMLAQILEQR 295
                 88777766554 PP

>> T4SS_TraI  Type IV secretory system, conjugal DNA-protein transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     3e-05     0.018     128     161 ..      13      46 ..      10      57 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3e-05
   T4SS_TraI 128 veeGWeeGeeqadeifeanlnrlkrdyeGmvrYr 161
                  ++GW  G+++a+++ +++ +rl+rdy   v++ 
  CTQ27675.1  13 AAYGWYMGRRSAQQSKQDDASRLSRDYVAGVNFL 46 
                 578************************9888775 PP

>> RIP  Ribosome inactivating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.94   5.8e+02      75     133 ..     183     242 ..     178     261 .. 0.75
   2 ?   12.6   0.0   0.00012     0.074     108     164 ..     301     357 ..     283     377 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.94
                 EEESCSTTS-GGSSSS-EE-SC-SSH.HHH..CTTS-GGGSEBSHHHHHHHHHHHHT--S CS
         RIP  75 wyelakekgskallpgsttlgfggsY.slLenvgsasleevelgrqsleeAvraLarykt 133
                 w ela +++ ++ l+++ +l  +g   ++ +++ s  +  v++ +    +Av++L r  +
  CTQ27675.1 183 WCELALQQMAANDLDKAMALLRKGAAaDRNSARVSIMMGRVWMEKGDYAKAVESLERVID 242
                 677777777777776666666666665777777789999999999999999999988655 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00012
                 TS-GGGSEBSHHHHHHHHHHHHT--SXXXSHHHHHHHHHHHHHHTHHHHHBHHHHHH CS
         RIP 108 sasleevelgrqsleeAvraLaryktaaaeqadlaraLvvlivmvcEaaRfntisrt 164
                  ++  + +l r+++++ +++L+ y+ ++ae+ +++++L vl  mv E +R ++ +r 
  CTQ27675.1 301 AQNYVTRQLERHPTMRVFHKLMDYHLNEAEEGRAKESLGVLRNMVGEQVRSKPRYRC 357
                 56788899******************************************9998775 PP

>> Rapsyn_N  Rapsyn N-terminal myristoylation and linker region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0037       2.3      13      56 ..      42      85 ..      29      99 .. 0.88
   2 ?   -0.3   0.0       1.9   1.2e+03      33      57 ..     134     158 ..     123     173 .. 0.66
   3 ?   -0.2   0.0       1.7   1.1e+03      16      75 ..     190     246 ..     179     250 .. 0.63
   4 ?    0.1   0.0       1.4   8.8e+02      56      76 ..     248     268 ..     222     270 .. 0.77
   5 ?   -1.6   0.0       4.7   2.9e+03      24      53 ..     336     365 ..     307     368 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0037
    Rapsyn_N 13 GLklyesndtekalrvWrkvLkktsdregkfrvLGcLitahsem 56
                G+++  sn+++ka+ ++  +Lk+ + + +    LG L+++  e+
  CTQ27675.1 42 GVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEV 85
                7778889*****************9999999999*999877665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.9
    Rapsyn_N  33 LkktsdregkfrvLGcLitahsemG 57 
                 + +t  r g ++ L  +++a s++ 
  CTQ27675.1 134 VDETDFRLGALQQLLQIYQATSDWQ 158
                 5555556666677777777777774 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.7
    Rapsyn_N  16 lyesndtekalrvWrkvLkktsdregkfrvLGcLitahsemGkykealefalaqldiare 75 
                     nd +ka+ + rk    ++   +  rv  ++ +  +e G y +a+e     +d  +e
  CTQ27675.1 190 QMAANDLDKAMALLRKG---AAADRNSARVSIMMGRVWMEKGDYAKAVESLERVIDQDKE 246
                 55566666666655543...3334444566666666778888888887766666666666 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.4
    Rapsyn_N  56 mGkykealefalaqldiarel 76 
                 +G   e+l+  ++ql+ + e 
  CTQ27675.1 248 VGETLEMLQTCYQQLGKTDEW 268
                 466678999999999888775 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 4.7
    Rapsyn_N  24 kalrvWrkvLkktsdregkfrvLGcLitah 53 
                 ++l v r+++ +  +++ ++r   c +tah
  CTQ27675.1 336 ESLGVLRNMVGEQVRSKPRYRCQKCGFTAH 365
                 456666666777778888888888888888 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.18   1.1e+02      17      29 ..      52      64 ..      52      66 .. 0.90
   2 ?   -0.5   0.0       3.1   1.9e+03      10      28 ..      79      97 ..      74      98 .. 0.78
   3 ?    6.2   0.1     0.022        14      10      28 ..     117     135 ..     115     136 .. 0.88
   4 ?   -0.7   0.0       3.6   2.2e+03      14      25 ..     194     205 ..     192     205 .. 0.84
   5 ?    1.0   0.1         1   6.3e+02      13      29 ..     331     347 ..     329     349 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.18
         PPR 17 eeAlelfkeMkek 29
                ++A++lf +M+++
  CTQ27675.1 52 DKAVDLFLDMLKE 64
                79********987 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 3.1
         PPR 10 ycknGkleeAlelfkeMke 28
                + + G+++ A+++++ + e
  CTQ27675.1 79 FRSRGEVDRAIRIHQSLME 97
                66789******99987665 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.022
         PPR  10 ycknGkleeAlelfkeMke 28 
                 y  +G+++ A+++fk++++
  CTQ27675.1 117 YMAAGLYDRAEDMFKQLVD 135
                 7789***********9875 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 3.6
         PPR  14 GkleeAlelfke 25 
                 ++l++A+ l+++
  CTQ27675.1 194 NDLDKAMALLRK 205
                 799*****9975 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 1
         PPR  13 nGkleeAlelfkeMkek 29 
                 +G+ +e l +++ M+ +
  CTQ27675.1 331 EGRAKESLGVLRNMVGE 347
                 799***********976 PP

>> Leuk-A4-hydro_C  Leukotriene A4 hydrolase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       1.5   9.1e+02      11      45 ..     131     166 ..     123     182 .. 0.66
   2 ?    2.9   0.1      0.18   1.1e+02      22      68 ..     158     205 ..     140     223 .. 0.72
   3 ?    7.1   0.1    0.0093       5.7       6      47 ..     233     275 ..     229     332 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.5
                      HHHHTT-GGG-HHHHHHHHHHTI.IIT---H.HHHHH CS
  Leuk-A4-hydro_C  11 ekLlekekplpaekleaLdelYk.lseskNa.eirlr 45 
                      ++L++++ ++   +l++L ++Y+  s+ + a e+  r
       CTQ27675.1 131 KQLVDET-DFRLGALQQLLQIYQaTSDWQSAiEVAER 166
                      5667755.78888899999999833333333255444 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.18
                      HHHHHHHHHHTIIIT.---HHHHHHHHHHHHHTT-GGGHHHHHHHTTT CS
  Leuk-A4-hydro_C  22 aekleaLdelYklse.skNaeirlrwlqlalkakyeeavpevaeflgs 68 
                      ++++e  ++l kl +  +  ei   w++lal++ + + ++++ ++l +
       CTQ27675.1 158 QSAIEVAERLVKLGKeKHRGEIANFWCELALQQMAANDLDKAMALLRK 205
                      566666666677655145569**********99999999999888765 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0093
                      HHHHHHHHHTT-GGG-HHHHHHHHHHTI.IIT---HHHHHHHH CS
  Leuk-A4-hydro_C   6 kvlfLekLlekekplpaekleaLdelYk.lseskNaeirlrwl 47 
                       v  Le++++++k+l  e+le L+++Y+ l ++ + e+ lr +
       CTQ27675.1 233 AVESLERVIDQDKELVGETLEMLQTCYQqLGKTDEWEVFLRRC 275
                      577899****9****************76********988754 PP

>> zinc_ribbon_15  zinc-ribbon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2    0.0003      0.18      64      85 ..     345     374 ..     315     375 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0003
  zinc_ribbon_15  64 e........kkeCknCgkeveeefkyCpkC 85 
                               ++C++Cg + +  + +Cp+C
      CTQ27675.1 345 VgeqvrskpRYRCQKCGFTAHTLYWHCPSC 374
                     04445556699******************* PP

>> SPG48  AP-5 complex subunit, vesicle trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       9.2   5.7e+03      39      73 ..      98     133 ..      68     138 .. 0.68
   2 ?   11.0   0.0   0.00074      0.46       7      52 ..     231     289 ..     225     319 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 9.2
       SPG48  39 asdlskarllLailqFfLnhgeavavd.aeavlktl 73 
                 +++l++ + lLa+ q   ++  a ++d ae+++k+l
  CTQ27675.1  98 SASLTYDQRLLAVQQLGRDYMAAGLYDrAEDMFKQL 133
                 345566777888888777777777777345555555 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00074
       SPG48   7 veavklLdllcrldsslvarvlptikrllq.............rlasdlskarllLail 52 
                   av+ L+ + ++d++lv ++l  +++ +q             r++++ + a++ L ++
  CTQ27675.1 231 AKAVESLERVIDQDKELVGETLEMLQTCYQqlgktdewevflrRCVEENAGATAELMLA 289
                 579***************************55555555555555555555555555555 PP

>> Zn_Tnp_IS1  InsA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.039        24      20      34 ..     346     360 ..     336     361 .. 0.74
   2 ?    5.7   0.1      0.02        13       7      13 ..     370     376 ..     366     380 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.039
  Zn_Tnp_IS1  20 GkstagHeRfrCrdC 34 
                 G       R+rC++C
  CTQ27675.1 346 GEQVRSKPRYRCQKC 360
                 55556667******* PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.02
  Zn_Tnp_IS1   7 hCPrCss 13 
                 hCP+C+s
  CTQ27675.1 370 HCPSCRS 376
                 9****98 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.6    0.0015      0.95       3      18 ..     353     368 ..     351     378 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0015
   zf-CCHC_3   3 asaaCQkClkkGHwtY 18 
                  + +CQkC+++ H  Y
  CTQ27675.1 353 PRYRCQKCGFTAHTLY 368
                 6789*********765 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.6    0.0029       1.8       6      35 ..     355     378 ..     354     383 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0029
  Zn-ribbon_8   6 YrCeeCghefevlqsisdaplta.CPeCgs.e 35 
                  YrC++Cg  f++        l   CP+C s +
   CTQ27675.1 355 YRCQKCG--FTAHT------LYWhCPSCRSwA 378
                  *******..66443......4445****9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1061  (0.0591779); expected 358.6 (0.02)
Passed bias filter:                      740  (0.0412739); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.46
# Mc/sec: 2542.91
//
Query:       CTQ27676.1  [L=245]
Description: orotidine-5'-phosphate decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-51  174.8   0.0    2.2e-51  174.6   0.0    1.0  1  OMPdecase     Orotidine 5'-phosphate decarboxylase / HUMPS fa
  ------ inclusion threshold ------
       0.11   11.9   0.8       0.71    9.3   0.2    2.7  2  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.6   0.0   2.5e-55   2.2e-51       1     225 []      15     237 ..      15     237 .. 0.94

  Alignments for each domain:
  == domain 1  score: 174.6 bits;  conditional E-value: 2.5e-55
                 SEEEEEE-SSSHHHHHHHHHHHGGGSSEEEEEHHHHHHHTHH.HHTHHHHHHHHHTSEEEEEEEE-S-HHHHHHHHHSTCHHHHTTESEEEEEGTGHHH CS
   OMPdecase   1 snLclalDvatarelleladkvgpsivvlKthydlvegwgfegtgaklaalarkhgflifeDrKfaDIGntvekqatagsarikewadivtvhavaGka 99 
                 s++++alD+++++++l+++d+++p  + lK++ ++++  g      ++++ ++++gf++f+D+Kf+DI+nt +++++   a++++++++v+vha  G  
  CTQ27676.1  15 SPVVVALDYDNRDKALAFVDRIDPRDCRLKVGKEMFTLLG-----PQFVRDLHQRGFEVFLDLKFHDIPNTTARAVA---AAAELGVWMVNVHASGGAR 105
                 5799************************************.....*******************************7...899**************** PP

                 HHHHHHHHHHHTT..S.EEEEEESTSSGGHHHHHH.H..SHHHHHHHHHHHHHHHTTESEEECCCHTH.HHHHH.TTCSCEEEHHHTTEEEEECTTCCG CS
   OMPdecase 100 svkalaeaaekwg..nrgllilaqmsskgnlmlqe.k..gytqacveaarehkaedfvmGfvaqetln.ateed.addfihltpgigleqggdgkgqqy 191
                 +++a+ ea+  +g  ++ l++++ ++s+++ +lq+ +      + + ++++ +++++++G+v++++++ + + + ++ f+ +tpgi++ qg+d+++q++
  CTQ27676.1 106 MMTAAREALLPFGkdAPLLIAVTVLTSMESSDLQDlGitLSPADYAAKLAALTQRCGLDGVVCSAQEAvRFKHElGQAFKLVTPGIRP-QGSDAGDQRR 203
                 *********999988899*****************95677778888888888888*************855666799***********.********** PP

                 GGHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHH CS
   OMPdecase 192 ntpekligiagadiiivGRgIlkagdpveeaery 225
                  ++++++++ag d++++GR++++++dp+++++++
  CTQ27676.1 204 IMTPEQAQEAGVDYMVIGRPVTQSADPAATLRAI 237
                 *****************************99875 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.096   8.6e+02     141     157 ..      24      42 ..      16      44 .. 0.80
   2 ?    9.3   0.2     8e-05      0.71      71      94 ..      80     109 ..      59     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.096
                   C..HHHHHHHHHHTTTTEE CS
  AP_endonuc_2 141 d..eelarlldavdspnvg 157
                   d  +++++++d++d++ ++
    CTQ27676.1  24 DnrDKALAFVDRIDPRDCR 42 
                   134999********98876 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 8e-05
                   HHHHHHHHHHHHTBSEEEEEBCC......G CS
  AP_endonuc_2  71 alkraielaaaLGapllvlhpGt......a 94 
                    + ra+ +aa+LG+ ++++h+++      a
    CTQ27676.1  80 TTARAVAAAAELGVWMVNVHASGgarmmtA 109
                   5789****************8844444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1853.08
//
Query:       CTQ27677.1  [L=108]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-17   64.4   0.3    1.3e-17   64.1   0.3    1.1  1  SUI1      Translation initiation factor SUI1
  ------ inclusion threshold ------
      0.096   12.6   0.0       0.13   12.2   0.0    1.2  1  DUF2019   Domain of unknown function (DUF2019)


Domain annotation for each model (and alignments):
>> SUI1  Translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.3   1.5e-21   1.3e-17       4      76 ..      32     101 ..      29     102 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 1.5e-21
        SUI1   4 kihirleqrgg.rKkvTtvsgleafgidlkklakelkkkfacsgsvvkdggeeiqvQGdqrkkvaelLtekygv 76 
                  ++i++++ g+ +K v ++sg++a++  l  la elkkk++c+g v kdg  +i++QGd r+ ++ lL+ k g+
  CTQ27677.1  32 IVRIQRQTSGRkGKGVCLISGIDADDAALTALAAELKKKCGCGGAV-KDG--VIEIQGDKRDLLKSLLEAK-GM 101
                 699*****9999*********************************8.999..9****************99.86 PP

>> DUF2019  Domain of unknown function (DUF2019)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.5e-05      0.13      11      65 ..      52     106 ..      49     108 .] 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHSTT-GGGGGGGGGGSS-HHHHHH CS
     DUF2019  11 gieqddAllkleiakynrlfakmkevsaELkrrdGDqRraLlsLyehpnvqvRlk 65 
                 gi+ ddA l++  a+ ++      +v++ + + +GD+R +L sL+e   ++v+l 
  CTQ27677.1  52 GIDADDAALTALAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMKVKLA 106
                 56778888888888888888888899999999********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 858.36
//
Query:       CTQ27678.1  [L=73]
Description: lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-07   30.6  13.5      4e-07   29.9  13.5    1.4  1  Gly-zipper_Omp   Glycine zipper
    3.7e-07   29.9  22.6    5.2e-07   29.4  22.6    1.2  1  Rick_17kDa_Anti  Glycine zipper 2TM domain
     0.0017   18.0  23.8     0.0076   16.0  23.8    1.9  1  Gly-zipper_YMGG  YMGG-like Gly-zipper
  ------ inclusion threshold ------
       0.12   12.4   0.6       0.14   12.2   0.6    1.1  1  DUF4337          Domain of unknown function (DUF4337)
       0.32   10.8  24.5        2.2    8.1  24.6    2.0  1  Gly-zipper_OmpA  Glycine-zipper domain
       0.94    9.6   5.8        0.2   11.7   1.6    1.8  2  DUF2892          Protein of unknown function (DUF2892)
        1.3    8.7   6.8        1.4    8.5   6.8    1.1  1  TraT             Enterobacterial TraT complement resistance p


Domain annotation for each model (and alignments):
>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9  13.5   1.6e-10     4e-07       4      40 ..      36      73 .]      27      73 .] 0.85

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.6e-10
  Gly-zipper_Omp  4 aiGAaaGaliGg.avggrgtGaliGAavGaavGgliGa 40
                    aiGA aGa+ G+  + g++ G+l+GAavG+++G ++G+
      CTQ27678.1 36 AIGAGAGAIGGAvLTDGSALGTLGGAAVGGIIGHQVGK 73
                    89*****9977633448999999999999999999996 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4  22.6     2e-10   5.2e-07       3      42 .]      35      72 ..      33      72 .. 0.96

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2e-10
  Rick_17kDa_Anti  3 aliGAaaGgvaGaaigggggrvlGavvGAaaGavaGnaig 42
                     ++iGA+aG++ Ga +  ++g++lG+++GAa+G+++G+++g
       CTQ27678.1 35 TAIGAGAGAIGGAVL--TDGSALGTLGGAAVGGIIGHQVG 72
                     99*************..999******************97 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0  23.8     3e-06    0.0076       3      42 ..      31      70 ..      29      73 .] 0.74

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3e-06
                     ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Gly-zipper_YMGG  3 avrGAaiGAaaGAvvGaliGsgggkGAaiGAaaGalaGga 42
                     + r +aiGA+aGA++Ga+   g + G++ GAa+G++ G  
       CTQ27678.1 31 RDRNTAIGAGAGAIGGAVLTDGSALGTLGGAAVGGIIGHQ 70
                     5689****************33345777777777766655 PP

>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   5.5e-05      0.14     113     160 ..       5      52 ..       1      53 [. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.5e-05
     DUF4337 113 asdkfdlasalLqiaIvlaaialltkkklllylslvlglvGlvlflag 160
                  s+k++  ++++ +a++l+a + ++k+    +++ ++g++G ++ + g
  CTQ27678.1   5 TSKKMAAVVLAVTVAMSLSACSNMSKRDRNTAIGAGAGAIGGAVLTDG 52 
                 678899999********************************9987765 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  24.6   0.00086       2.2       3      41 ..      34      69 ..      33      72 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00086
  Gly-zipper_OmpA  3 gAavGAalGAaaGAavGaitGsaGtGAaiGAasGavaGl 41
                     ++a+GA+ GA++GA++  ++   + G   GAa+G+++G 
       CTQ27678.1 34 NTAIGAGAGAIGGAVLTDGS---ALGTLGGAAVGGIIGH 69
                     67888888888888854443...5799999999999986 PP

>> DUF2892  Protein of unknown function (DUF2892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.2      0.35   8.9e+02      16      28 ..      10      22 ..       7      26 .. 0.57
   2 ?   11.7   1.6   7.7e-05       0.2       3      40 ..      26      64 ..      20      69 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.35
     DUF2892 16 vGlvllllallgl 28
                +++vl+++++++l
  CTQ27678.1 10 AAVVLAVTVAMSL 22
                4555555555544 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 7.7e-05
     DUF2892  3 kNvgtldRilrivvGlvllllallglsggw.gwllglvG 40
                 N+++ dR   i +G+ ++++a+l+ +++   +  ++vG
  CTQ27678.1 26 SNMSKRDRNTAIGAGAGAIGGAVLTDGSALgTLGGAAVG 64
                5************************97766533334444 PP

>> TraT  Enterobacterial TraT complement resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.8   0.00056       1.4      66     128 ..      10      72 ..       5      73 .] 0.72

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00056
        TraT  66 qanvlyvdkktdkaaaegalkaGfggalagaaagaaigaa.nggsagaalggglvGglvgaiag 128
                  a vl v  +++ +a +++ k+    ++ ga+aga  ga+ ++gsa ++lgg++vGg++g  +g
  CTQ27678.1  10 AAVVLAVTVAMSLSACSNMSKRD-RNTAIGAGAGAIGGAVlTDGSALGTLGGAAVGGIIGHQVG 72 
                 56677777777777877777777.4556666666666665577899999999999999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 549.96
//
Query:       CTQ27679.1  [L=249]
Description: DNA-binding transcriptional repressor, DeoR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-41  141.8   0.0    3.7e-41  140.7   0.0    1.5  2  DeoRC           DeoR C terminal sensor domain
    2.3e-14   52.9   0.2    4.5e-14   51.9   0.2    1.5  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    2.4e-09   37.0   0.4    2.2e-07   30.7   0.1    2.3  2  HTH_11          HTH domain
    7.1e-07   29.2   0.0    2.8e-06   27.3   0.0    1.9  2  HTH_Mga         M protein trans-acting positive regulator (MG
    1.1e-05   24.8   0.6     0.0002   20.8   0.1    2.3  2  HTH_24          Winged helix-turn-helix DNA-binding
    0.00031   20.5   0.0    0.00066   19.5   0.0    1.6  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
     0.0021   17.6   0.1     0.0047   16.6   0.1    1.6  1  GntR            Bacterial regulatory proteins, gntR family
     0.0024   17.7   0.0     0.0051   16.7   0.0    1.4  1  HTH_5           Bacterial regulatory protein, arsR family
      0.003   17.5   0.9      0.049   13.6   0.1    2.3  2  MarR            MarR family
      0.003   17.4   0.1      0.016   15.1   0.0    2.0  2  MarR_2          MarR family
     0.0032   17.5   0.1     0.0078   16.2   0.1    1.7  1  Put_DNA-bind_N  Putative DNA-binding protein N-terminus
     0.0049   16.8   0.1      0.065   13.2   0.0    2.2  2  HTH_36          Helix-turn-helix domain
      0.009   16.0   0.3      0.027   14.4   0.0    1.9  2  HTH_Crp_2       Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.019   14.5   0.1      0.045   13.3   0.0    1.7  1  Sigma70_r4      Sigma-70, region 4
      0.024   15.0   0.2      0.076   13.4   0.0    1.8  2  FaeA            FaeA-like protein
       0.03   14.7   0.1      0.086   13.2   0.0    1.8  1  Rrf2            Transcriptional regulator
      0.035   13.8   0.1       0.29   10.8   0.0    2.1  2  Sigma70_r4_2    Sigma-70, region 4
       0.06   13.1   0.3       0.18   11.6   0.1    1.9  2  MerR            MerR family regulatory protein
       0.07   12.9   0.1       0.17   11.7   0.1    1.6  1  HTH_IclR        IclR helix-turn-helix domain
       0.07   12.6   0.1       0.27   10.7   0.1    2.0  2  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.081   13.0   0.0       0.18   11.9   0.0    1.5  1  HTH_29          Winged helix-turn helix
      0.085   12.5   0.0       0.23   11.1   0.0    1.7  2  CENP-B_N        CENP-B N-terminal DNA-binding domain
       0.11   11.9   0.0       0.64    9.4   0.0    2.0  2  RepL            Firmicute plasmid replication protein (RepL)
       0.13   12.3   0.2        1.3    9.1   0.0    2.4  2  HTH_3           Helix-turn-helix
       0.15   11.9   0.2       0.38   10.6   0.0    1.8  2  HTH_10          HTH DNA binding domain


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         5   3.6e+03     132     154 ..      11      33 ..       3      34 .. 0.76
   2 !  140.7   0.0   5.1e-44   3.7e-41       4     159 ..      71     225 ..      68     226 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5
       DeoRC 132 llaDssKfgkrafvriaaleeid 154
                 +++D+ ++   ++++++ ++e++
  CTQ27679.1  11 VVIDKGRMSVADLAKMTGVSEVT 33 
                 78888888888888888888876 PP

  == domain 2  score: 140.7 bits;  conditional E-value: 5.1e-44
       DeoRC   4 eeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflgang 102
                 + Kr++A++Aa+l++ g+t+f+++G+++++lar Lae+ ++t++T s  +a+ L+e+   +villGG ++k+ses+vgpl+ ++++q++++kaf+g++g
  CTQ27679.1  71 AIKRELASRAAALVNTGETVFIENGSSNALLARTLAERGDITIITVSSYIAHLLKET-PGEVILLGGIYQKRSESMVGPLTRQFIQQVHFSKAFIGIDG 168
                 569*****************************************************9.78*************************************** PP

       DeoRC 103 idaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitD 159
                 ++ae+g+t  d+++a v +a++e+  + i+l DssKf  ++++ +++  +++++itD
  CTQ27679.1 169 WQAETGFTGRDMMRADVVNAVLEKHCEAIILSDSSKFSAVHPYPLGPAGRFNRVITD 225
                 ********************************************************9 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.2   6.3e-17   4.5e-14       1      56 [.       4      59 ..       4      60 .. 0.95

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 6.3e-17
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsiss 56
                R++ il+ + ++g +sv +l+   gvSe TiR DLn Le+q  l+RthG av ++s
  CTQ27679.1  4 RQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHGYAVPLDS 59
                9************************************************9886665 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1     3e-10   2.2e-07       1      43 [.       4      45 ..       4      60 .. 0.87
   2 ?    4.3   0.0     0.054        39      15      39 ..      98     123 ..      91     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 3e-10
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                R+++il+ +   +g +s ++LA+ ++vS+ t+r+d+  Le++ 
  CTQ27679.1  4 RQQSILQVV-IDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQS 45
                89*******.66667************************9976 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.054
      HTH_11  15 p.isgeeLAeeLnvSrrtvrrdIkaL 39 
                 + + + +LAe+ +++  tv  +I+ L
  CTQ27679.1  98 NaLLARTLAERGDITIITVSSYIAHL 123
                 447789*****************988 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   3.9e-09   2.8e-06       5      44 ..       3      41 ..       2      46 .. 0.94
   2 ?   -1.7   0.0       4.2     3e+03      26      44 ..     105     123 ..     100     131 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 3.9e-09
     HTH_Mga  5 krklkLlelLteneksltldelakeLglseltlqsdiseL 44
                +r++ +l  +++ ++++++ +lak +g se+t+++d++ L
  CTQ27679.1  3 ARQQSILQVVID-KGRMSVADLAKMTGVSEVTIRQDLNLL 41
                59**********.***********************9865 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.2
     HTH_Mga  26 lakeLglseltlqsdiseL 44 
                 la++ +++  t+ s+i +L
  CTQ27679.1 105 LAERGDITIITVSSYIAHL 123
                 5666667777788888776 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   2.9e-07    0.0002       1      44 [.       1      44 [.       1      48 [. 0.85
   2 ?    2.2   0.0      0.18   1.3e+02      22      44 ..     104     126 ..     100     126 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.9e-07
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeee 44
                ++  +  IL+++ +++r+s ++LA+++g+S  t+++ l+ Le++
  CTQ27679.1  1 MNARQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQ 44
                6788999***********************98887777666665 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.18
      HTH_24  22 eLAerlglSpstvnrrlkrLeee 44 
                  LAer ++++ tv+ ++  L +e
  CTQ27679.1 104 TLAERGDITIITVSSYIAHLLKE 126
                 5899999**********999875 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   9.2e-07   0.00066       8      36 ..       8      36 ..       6      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 9.2e-07
  HTH_AsnC-type  8 ILeaLqedaRisyaeLAervGlSestvlr 36
                   IL+     +R+s+a+LA+++G+Se t+++
     CTQ27679.1  8 ILQVVIDKGRMSVADLAKMTGVSEVTIRQ 36
                   88888889*****************9985 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   6.5e-06    0.0047      23      59 ..      17      52 ..       5      55 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.5e-06
                B---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
        GntR 23 kLPsereLaaefgVsrttvReALrrLeaeglverrqg 59
                ++ s+ +La++ gVs  t+R+ L+ Le + ++ r +g
  CTQ27679.1 17 RM-SVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHG 52
                56.899****************************998 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.1e-06    0.0051       7      42 ..       8      44 ..       5      48 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.1e-06
                HHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHT CS
       HTH_5  7 ILklLae.gelcvcelaeelglsqstvShHLkkLrea 42
                IL+ + + g ++v +la+++g+s+ t+++ L+ L+++
  CTQ27679.1  8 ILQVVIDkGRMSVADLAKMTGVSEVTIRQDLNLLEKQ 44
                7777888799*************************98 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   6.8e-05     0.049       2      51 ..       2      51 ..       1      52 [. 0.94
   2 ?    2.1   0.1      0.25   1.8e+02      21      43 ..     103     125 ..      96     126 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.8e-05
                -HHHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR  2 tltqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRsk 51
                ++ q +iL  + ++g +sv++Lak+ gvs  t+   l  Lek+ +++R++
  CTQ27679.1  2 NARQQSILQVVIDKGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTH 51
                6788999*****************************************97 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.25
                 HHHHHHHTS-HHHHHHHHHHHHH CS
        MarR  21 seLakklgvskstvtrvldrLek 43 
                   La++  +++ tv+  + +L k
  CTQ27679.1 103 RTLAERGDITIITVSSYIAHLLK 125
                 57999999***9**999999988 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.2e-05     0.016       5      54 ..       3      50 ..       1      56 [. 0.88
   2 ?   -0.7   0.0       1.9   1.4e+03      21      45 ..      99     123 ..      90     126 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.2e-05
                HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  5 paqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                  q  +L ++ + ++  ++v++la+ +g+s  ++ + l+ L+++ +++r+
  CTQ27679.1  3 ARQQSILQVVIDKGR--MSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRT 50
                567778888888887..******************************997 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.9
                 EEEHHHHHHHHTSSHHHHHHHHHHH CS
      MarR_2  21 dltvgelarrlglsksavsrilkrL 45 
                  l ++ la+r +++  +vs  ++ L
  CTQ27679.1  99 ALLARTLAERGDITIITVSSYIAHL 123
                 4778899999999988888777766 PP

>> Put_DNA-bind_N  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.1e-05    0.0078      27      49 .]      17      39 ..       7      39 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.1e-05
                    EE-HHHHHHHCTS-HHHHHHHHH CS
  Put_DNA-bind_N 27 riSSteLaealgvtaaqvRKDLS 49
                    r S  +La+++gv+++++R+DL+
      CTQ27679.1 17 RMSVADLAKMTGVSEVTIRQDLN 39
                    778899****************7 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   9.1e-05     0.065      27      55 .]      19      47 ..      13      47 .. 0.94
   2 ?    1.2   0.0      0.49   3.5e+02      28      49 ..     102     123 ..      72     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.1e-05
      HTH_36 27 sqetlakrlglsknTvsraikeLeqlGyi 55
                s+++lak +g+s+ T++  +++Le+  y+
  CTQ27679.1 19 SVADLAKMTGVSEVTIRQDLNLLEKQSYL 47
                89***********************9997 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.49
      HTH_36  28 qetlakrlglsknTvsraikeL 49 
                  +tla+r  +   Tvs++i+ L
  CTQ27679.1 102 ARTLAERGDITIITVSSYIAHL 123
                 57888888888889****9987 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.8e-05     0.027      21      54 ..      17      50 ..       2      61 .. 0.83
   2 ?   -2.5   0.0       7.4   5.3e+03      27      44 ..     105     122 ..     100     126 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.8e-05
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglisrg 54
                +++ ++lA m G++ +t+ + l+ L+++ +++r 
  CTQ27679.1 17 RMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRT 50
                7999*************************99953 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.4
                 HHHHTTSSHHHHHHHHHH CS
   HTH_Crp_2  27 lAsmlGltretvsrilse 44 
                 lA++  +t  tvs  +++
  CTQ27679.1 105 LAERGDITIITVSSYIAH 122
                 566666666677666555 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.3e-05     0.045       6      39 ..       2      36 ..       1      39 [. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.3e-05
                -HHHHHHHHHHH.TTT--HHHHHHHHTS-HHHHHH CS
  Sigma70_r4  6 pererevlelrf.geglTleEIgerlgiSrerVrq 39
                ++r++ +l+ +     ++ ++++++ g+S+ ++rq
  CTQ27679.1  2 NARQQSILQVVIdKGRMSVADLAKMTGVSEVTIRQ 36
                78**********87778*****************9 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   0.00011     0.076       2      48 ..       5      50 ..       4      52 .. 0.93
   2 ?   -2.2   0.0       7.9   5.7e+03      19      41 ..     103     125 ..      96     127 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00011
                HHHHHHHHHH.S----HHHHHHHHTS-HHHHHHHHHHHHHHSSEEEE CS
        FaeA  2 keeIleylnsikapckTreiAdalglsaYQaRyYLeqLekegkikrs 48
                +++Il+ +++ k+    +++A+ +g+s   +R  L+ Lek+  ++r+
  CTQ27679.1  5 QQSILQVVID-KGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRT 50
                5789999999.99999****************************997 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 7.9
                 HHHHHHHTS-HHHHHHHHHHHHH CS
        FaeA  19 reiAdalglsaYQaRyYLeqLek 41 
                 r +A+   +++  + +Y+  L k
  CTQ27679.1 103 RTLAERGDITIITVSSYIAHLLK 125
                 55677777777788888887766 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00012     0.086      23      60 ..      15      52 ..       7      54 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00012
                CC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
        Rrf2 23 eepvsseeiaerqnispsylekilakLrkaglvksvrG 60
                ++ +s++++a+++++s++ +++ l+ L+k+ +++ + G
  CTQ27679.1 15 KGRMSVADLAKMTGVSEVTIRQDLNLLEKQSYLRRTHG 52
                4569****************************998877 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0004      0.29      27      47 ..      18      38 ..      14      43 .. 0.92
   2 ?    0.1   0.0      0.93   6.7e+02      33      52 ..     106     125 ..      93     126 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0004
                  --HHHHHHHHT--HHHHHHHH CS
  Sigma70_r4_2 27 lsykEIAellgisegtVksrl 47
                  +s ++ A+++g+se+t+++ l
    CTQ27679.1 18 MSVADLAKMTGVSEVTIRQDL 38
                  89***************9976 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.93
                   HHHHT--HHHHHHHHHHHHH CS
  Sigma70_r4_2  33 AellgisegtVksrlsRArk 52 
                   Ae+ +i+  tV s+++  +k
    CTQ27679.1 106 AERGDITIITVSSYIAHLLK 125
                   555599999****9987665 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00025      0.18       2      17 ..      20      35 ..      19      36 .. 0.90
   2 ?   -2.3   0.0       5.6     4e+03       4      16 ..     104     116 ..     103     120 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
                HHHHHHHHTTTHHHHH CS
        MerR  2 IgevAeltGvsprtLR 17
                + ++A++tGvs  t+R
  CTQ27679.1 20 VADLAKMTGVSEVTIR 35
                679************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.6
                 HHHHHHTTTHHHH CS
        MerR   4 evAeltGvsprtL 16 
                  +Ae+ ++++ t+
  CTQ27679.1 104 TLAERGDITIITV 116
                 5899999998776 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00023      0.17      14      50 ..      14      49 ..       4      51 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00023
                TTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 14 eapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                  ++ +++++lA+ tg++  t +  L+ L+++ y+++
  CTQ27679.1 14 DKGR-MSVADLAKMTGVSEVTIRQDLNLLEKQSYLRR 49
                5555.9*****************************98 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00037      0.27      27      45 ..      15      35 ..       5      36 .. 0.78
   2 ?   -2.2   0.0       3.9   2.8e+03      19      27 ..     119     127 ..     118     128 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00037
  HTH_Tnp_ISL3 27 s..rsvkavArqlgvSwtTVw 45
                     +sv++ A+++gvS+ T++
    CTQ27679.1 15 KgrMSVADLAKMTGVSEVTIR 35
                  5558*************9996 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.9
  HTH_Tnp_ISL3  19 yilellles 27 
                   yi++ll+e+
    CTQ27679.1 119 YIAHLLKET 127
                   8*****997 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00024      0.18       9      37 ..      14      42 ..      10      52 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00024
      HTH_29  9 aeGvstvsqiAkllglsrrtvyrwlkrfe 37
                ++G ++v+++Ak++g+s+ t++  l++ e
  CTQ27679.1 14 DKGRMSVADLAKMTGVSEVTIRQDLNLLE 42
                788889***************98766665 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00032      0.23      19      43 ..      13      38 ..       8      49 .. 0.87
   2 ?   -3.2   0.0       9.7   6.9e+03      19      31 ..      92     104 ..      92     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00032
                HHCTT.-HHHHHHHHT--CCHHHHHH CS
    CENP-B_N 19 leege.Skaelarrfnvpestlsdil 43
                ++ g  S+a+la++ +v e t+++ l
  CTQ27679.1 13 IDKGRmSVADLAKMTGVSEVTIRQDL 38
                678888****************9855 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9.7
                 HHCTT-HHHHHHH CS
    CENP-B_N  19 leegeSkaelarr 31 
                 +e g S a lar 
  CTQ27679.1  92 IENGSSNALLART 104
                 5888899999996 PP

>> RepL  Firmicute plasmid replication protein (RepL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00089      0.64      78     111 ..      20      52 ..      11      58 .. 0.88
   2 ?   -0.3   0.0      0.89   6.4e+02      71      96 ..      97     120 ..      90     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00089
        RepL  78 nRelaeetgislktvsetlkileeanilkkkanG 111
                 +  la+ tg+s  t+++ l  le+  +l++   G
  CTQ27679.1  20 VADLAKMTGVSEVTIRQDLNLLEKQSYLRRTH-G 52 
                 5679************************9976.4 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.89
        RepL  71 nntliatnRelaeetgislktvsetl 96 
                 +n l+   R lae+ +i + tvs  +
  CTQ27679.1  97 SNALL--ARTLAERGDITIITVSSYI 120
                 55554..599***********99765 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0018       1.3      10      27 ..      18      35 ..      12      36 .. 0.88
   2 ?    0.4   0.1         1   7.2e+02      14      30 ..     104     120 ..      92     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0018
                HHHHHHHHHHTSSHHHHH CS
       HTH_3 10 lsqeeLAeklGvsrstis 27
                +s ++LA+++Gvs  ti+
  CTQ27679.1 18 MSVADLAKMTGVSEVTIR 35
                8999************97 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1
                 HHHHHHTSSHHHHHHHH CS
       HTH_3  14 eLAeklGvsrstisriE 30 
                  LAe+ +++  t+s ++
  CTQ27679.1 104 TLAERGDITIITVSSYI 120
                 58999999999999885 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00053      0.38      23      46 ..      17      40 ..       3      44 .. 0.87
   2 ?   -3.1   0.0       9.7     7e+03      27      44 ..     103     120 ..     102     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00053
      HTH_10 23 rvtlkeLAkelGIskstlsehLrk 46
                r+++++LAk  G+s+ t+ + L+ 
  CTQ27679.1 17 RMSVADLAKMTGVSEVTIRQDLNL 40
                7899**************999875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.7
      HTH_10  27 keLAkelGIskstlsehL 44 
                 + LA++ +I+  t+s ++
  CTQ27679.1 103 RTLAERGDITIITVSSYI 120
                 579999999888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1933.96
//
Query:       CTQ27680.1  [L=59]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 479.39
//
Query:       CTQ27681.1  [L=644]
Description: ribonuclease II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-83  281.4   0.0    1.3e-83  281.1   0.0    1.1  1  RNB       RNB domain
    3.6e-19   68.2   0.0    8.1e-19   67.1   0.0    1.7  1  OB_RNB    Ribonuclease B OB domain
    6.3e-12   45.7   3.0    3.3e-10   40.2   0.7    2.4  2  S1        S1 RNA binding domain
    6.9e-12   45.4   0.0    1.8e-08   34.4   0.0    2.7  2  CSD2      Cold shock domain
  ------ inclusion threshold ------
      0.025   14.9   0.0       0.13   12.6   0.0    2.2  2  PilZ      PilZ domain


Domain annotation for each model (and alignments):
>> RNB  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.1   0.0   3.5e-87   1.3e-83       1     325 [.     189     516 ..     189     517 .. 0.94

  Alignments for each domain:
  == domain 1  score: 281.1 bits;  conditional E-value: 3.5e-87
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB   1 RkdlrdllvitIdpedakdlDdAisieklpngnyelgVhIADvshyvkegspldkearkratsvyLpekvvpMLPqelsedlcSLnpgedrlalsvlid 99 
                 R++l++l ++tId+++++d+DdA++ e + +g+  l+V+IAD++ ++ egs+ld+ a+ ra++ yLp+ ++pMLP+els+dlcSL+++e r+ l ++++
  CTQ27681.1 189 RRNLTALDFVTIDSASTEDMDDALYAESTADGKLLLTVAIADPTAWIAEGSKLDNAAKVRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMT 287
                 899************************************************************************************************ PP

                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 100 vdekgev.lsveiylsvIkskarltydevqdlleqkdeke.ekk.taedLellyelakalrkkRlkkgalef.dspeikllldedkgnrielkveeetk 194
                 + ++g++ ++ e+  ++I+ska+l yd+v+d+le+  + + + + +a+++ ll+ ++++ +++R+ + al f d p++++ l e kg+++++  e ++ 
  CTQ27681.1 288 LAADGTIeDNIEFFAATIESKAKLAYDDVSDWLEGRGSWQpDSEaIAQQITLLKDVCQRRSEWRQTH-ALVFkDRPDYRFVLGE-KGEVLDIVAEPRRI 384
                 *******9999***********************99988864336*******************777.777769**********.************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 195 ahslveelmllANelvArflseleipailriheepsnekledliklakklglk..lednsskknlqeslekleeeeaeqllselllrllkeakyssepv 291
                 a+++vee m++AN ++Ar+l  +   +++++h+ +++ + e+l+ l+k++++   +++  + + + ++ ++l+ ++   +l+  ++r+ + a++s+ep 
  CTQ27681.1 385 ANRIVEESMIAANICAARVLRDKLGFGVYNVHTGFDPANTEQLAALLKTHDVHvdPTEVLTLEGFCKLRRELDAQP-TGFLDSRIRRFQSFAEISTEPG 482
                 ************************************************9999976444444445555555555555.899******************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 292 gHfgLaleeYthfTSPirRYpDlvvhrllkalla 325
                 +HfgL+le Y+++TSPir+Y D+++hrllka+++
  CTQ27681.1 483 PHFGLGLEAYATWTSPIRKYGDMINHRLLKAIIK 516
                 *******************************986 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   2.3e-22   8.1e-19       1      57 [.      24      80 ..      24      81 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 2.3e-22
                EEEEE-SSS-EEEEECT.TEEEEE-HHHHTTS-TT-EEEEEEEE.SSSEEEEEEEEEE CS
      OB_RNB  1 GtvrahkkGFGFlipdegkeDifippeqmkkamhGDrVlvritk.gdrrgrregrvvr 57
                G+v++++kGFGFl++d  ++++fipp qmkk+mhGDr+++ i++ ++r++++++ +v+
  CTQ27681.1 24 GVVKGTEKGFGFLEVDA-QKSYFIPPPQMKKVMHGDRIVAVIHSeKERESAEPESLVE 80
                89**************7.**************************99999999998887 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.1    0.0077        28       8      50 ..      22      64 ..      20      71 .. 0.83
   2 !   40.2   0.7   9.2e-14   3.3e-10       3      75 .]     559     636 ..     557     639 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0077
                EEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCE CS
          S1  8 veGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevl 50
                 eG+V+  +kg  f e+++  + f+p  +++  ++++ +  v+
  CTQ27681.1 22 AEGVVKGTEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRIVAVI 64
                59********999*****************9886666555555 PP

  == domain 2  score: 40.2 bits;  conditional E-value: 9.2e-14
                 TTTCEEEEEEEEEETTEEEEEET.TTEEEEEEGGGSSSS....CEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   3 ekgevveGeVtsvtkgGafVelg.ngvegfvpaselsrd....arvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                  +++++ +e+++v++gG++V+l+ ng+ +f+pa  l++     ++ +++++v  +G+ v+++ + +d++ ++++++++
  CTQ27681.1 559 GTDTRFAAEIIDVSRGGMRVRLVdNGAVAFIPAPFLHAVrdelVCSQENGTVQIKGEVVYKVTDVIDVTIAEVRMETR 636
                 57899**************************************88888888888888888888888888888887765 PP

>> CSD2  Cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00081       2.9      10      43 ..      41      76 ..      35      85 .. 0.77
   2 !   34.4   0.0   5.1e-12   1.8e-08       2      74 .]      99     175 ..      99     175 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00081
        CSD2 10 kqdifipkeklkgakdGdkVvveiteypdkkn..pe 43
                ++  fip+ + k++ +Gd +v+ i++ +++++  pe
  CTQ27681.1 41 QKSYFIPPPQMKKVMHGDRIVAVIHSEKERESaePE 76
                45669********************98765433455 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 5.1e-12
        CSD2   2 Vvpddkrlkqdifip..keklkgakdGdkVvveiteyp..dkknpeGevievLGkkgdpgveilsilakhglpeeFP 74 
                 +vpd++ lk+ i     +   +++k+Gd++v+e+ ++p  +++ + +e ++ +  ++d+ v ++++la+h+l++e P
  CTQ27681.1  99 IVPDHPLLKDAIPCRaaRGVEHDFKQGDWAVAEMRRHPlkGDRGFYAELTQFITFSDDHFVPWWVTLARHNLEKEAP 175
                 689999999876544223345579**************743466******************************988 PP

>> PilZ  PilZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.1   4.1e+03      52      80 ..     448     478 ..     439     491 .. 0.75
   2 ?   12.6   0.0   3.5e-05      0.13      22      97 ..     561     639 ..     533     641 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.1
                 EEEEEE..CECEEEEEEEEEEEEEECTCTTE CS
        PilZ  52 velklp..ldkdqelslpgrVvrvkpeedge 80 
                  ++kl+  ld++++ +l++r++r ++ ++ +
  CTQ27681.1 448 GFCKLRreLDAQPTGFLDSRIRRFQSFAEIS 478
                 567777779999999999***9999887655 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 3.5e-05
                 TEEEEEEEEEEESSEEEEEES........T-SS-TTSEEEEEEECECEEEEEEEEEEEEEECTCTTEEEEEEEEEECHHHHHHH CS
        PilZ  22 egelkgrliDiSlgGlairlp........deelalgdrvelklpldkdqelslpgrVvrvkpeedgerlGveFldldeeqrell 97 
                 ++++ + +iD+S+gG+++rl         ++++    r el    +++++++++g+Vv +  +     + v + ++ +e+r+ +
  CTQ27681.1 561 DTRFAAEIIDVSRGGMRVRLVdngavafiPAPFLHAVRDELVCS-QENGTVQIKGEVVYKVTD----VIDVTIAEVRMETRSII 639
                 556999**************999887776333333323333333.679999999999999999....66666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4688.63
//
Query:       CTQ27682.1  [L=385]
Description: putative amidase or amidotransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 3137.68
//
Query:       CTQ27683.1  [L=262]
Description: enoyl-(acyl-carrier-protein) reductase, NADH-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-85  284.9   0.4    5.1e-85  284.7   0.4    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    6.8e-15   55.0   0.0    8.5e-15   54.7   0.0    1.1  1  adh_short     short chain dehydrogenase
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.021   14.7   0.0    1.3  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.7   0.4   8.6e-89   5.1e-85       1     234 []      13     252 ..      13     252 .. 0.98

  Alignments for each domain:
  == domain 1  score: 284.7 bits;  conditional E-value: 8.6e-89
                   TTT..TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG..CSS-GGGH.- CS
  adh_short_C2   1 Gaa..sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapk..lkgpflet.s 91 
                   G+a   +I+++iA+a+++eGae+++t++ne++k rvee+a++lg++ vl+cDV+++e+++al+ e+++ + k+D++v+++g+ap+  l+g+++++ +
    CTQ27683.1  13 GVAskLSIAYGIAQAMHREGAELAFTYQNEKLKGRVEEFAAALGSDiVLPCDVAEDESITALFTELEKVWPKFDGFVHSIGFAPAdqLDGDYVDVvT 109
                   788778****************************************66**********************************************66* PP

                   HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHH CS
  adh_short_C2  92 reefdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdel 188
                   r++f+ a+d+++ys++++aka++ ++++g+++++ls++gaer++pnyn++g aKa+lea +ry+A+ +gp+g+RvNa+s+gpi+Tlaasgik+f+++
    CTQ27683.1 110 RDGFKIAHDISAYSFVAMAKACRGMLNPGSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKM 206
                   ************************************************************************************************* PP

                   HHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 189 leelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                   l+++ea +p++r++t+e+v++ a+fL+s+++++i+G++++vDgG++
    CTQ27683.1 207 LAHCEAVTPIRRTVTIEDVGNSAAFLCSNLSAGISGEVVHVDGGFN 252
                   ********************************************96 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   1.4e-18   8.5e-15       1     189 [.       7     199 ..       7     205 .. 0.86

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.4e-18
                 SEEEEESTTS..HHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S....S--SSG CS
   adh_short   1 kvvlvtGass..GIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi....tgsgpf 93 
                 k +l+tG +s   I + ia+++ +eGa++++  +++ekl+  ++e+ ++  + +++++Dv++ e++ al+ + +k + k d +v+  G     + +g+ 
  CTQ27683.1   7 KRILITGVASklSIAYGIAQAMHREGAELAF-TYQNEKLKGRVEEFAAALGSDIVLPCDVAEDESITALFTELEKVWPKFDGFVHSIGFapadQLDGDY 104
                 6799***9885579999***********977.77789999********988999***********************************7776555666 PP

                 GGCSHHH.HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG.TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  94 selseee.wervievNltgvflltravlpamlkqssGrIvnvsSvag.kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                  ++  ++ ++   ++   + + +++a  + ml  + G+   + S  g + + +++ + + +Ka +++ +r +a+ + p+g+rvna+  G+++T  a  
  CTQ27683.1 105 VDVVTRDgFKIAHDISAYSFVAMAKA-CRGML--NPGSALLTLSYLGaERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASG 199
                 66666666888899999998888887.56667..567777777776658999****************************************977665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.5e-06     0.021       4      96 ..      10      99 ..       8     110 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.5e-06
                EEETTTSHHHHH..HHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR  4 litGGlGgLGle..larwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96
                litG + +L  +  +a+ + ++ga+ l+++  +    e+ k +++e++a  g ++ v+++Dv++ ++++al++e+++  p+  G +h+ g++  ++
  CTQ27683.1 10 LITGVASKLSIAygIAQAMHREGAE-LAFTYQN----EKLKGRVEEFAAAlGSDI-VLPCDVAEDESITALFTELEKVWPKFDGFVHSIGFAPADQ 99
                7788777765432278888888875.6666666....344455666666526666.789*****************999********988766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2228.99
//
Query:       CTQ27684.1  [L=180]
Description: Protein ves [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-44  149.7   0.0    9.3e-44  149.6   0.0    1.0  1  HutD      HutD
  ------ inclusion threshold ------
       0.21   10.6   0.3       0.25   10.3   0.3    1.0  1  DUF1005   Protein of unknown function (DUF1005)


Domain annotation for each model (and alignments):
>> HutD  HutD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.6   0.0     1e-47   9.3e-44       4     172 ..      10     163 ..       7     174 .. 0.87

  Alignments for each domain:
  == domain 1  score: 149.6 bits;  conditional E-value: 1e-47
                 --EEE-TTSSEEEEEEEE.SS-SGGGS-SEEEEEEEE-S-EEE---TT-EEEEEEEESS-EEEEETE..E---B-BT--EEEETTS-EEEEESSS-EEE CS
        HutD   4 yrrmpWkNggGvTreiaiaPegaglddFaWRlSiAevaedgpFSaFpgidRvlvlLeGegltLevaggeeekllepleplaFsGdaavsaelldgpvrd 102
                 +  +pWkNggG+Trei+++P  a  + F WR+SiA++++dgpFS Fpg+dRv++lL+G+ l+L  ++    ++l+ ++p+aF+G++a+s+  + +p  d
  CTQ27684.1  10 LPVTPWKNGGGETREIICVP--APDAPFLWRASIATLQADGPFSPFPGVDRVITLLAGQPLRLCGEN--IDQPLALWQPWAFPGEWALSSVGIVAPGLD 104
                 5678****************..44445*************************************997..99**************************** PP

                 EEEEE-TTTEEEEEEEEEEEEEEEEEE.--SEEEEEESSS-EEEEETTE..EEEE-TT-EEEEES--.EEE CS
        HutD 103 lNlmtrrgrlqarvevlelekkaaasasgastvllfllkgqlevtlsveaadetlaagdalllegea.ale 172
                 +N+mt+rgr++a+v+v++    ++  a   s  + ++l+g++++      a +++aag++l+++g++ +  
  CTQ27684.1 105 FNIMTQRGRASATVQVVSD---LQCPA---SEGVAYVLQGEWDL------AGRRCAAGSGLCWRGGSpRNL 163
                 *****************85...33333...23379********9......6899*********99984333 PP

>> DUF1005  Protein of unknown function (DUF1005)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   2.8e-05      0.25     258     341 ..      47     137 ..      37     167 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.8e-05
     DUF1005 258 vtPFvpspGsdrvsrsnPGaWLilrPddg.....twkpWgrLeaWrergak.dslgyrFell.esgtesaasvllaestisakkgGkfsid 341
                   PF p+pG drv     G  L l  ++       w+pW+    W  +++   + g+ F+++ + g++sa+  ++++ +  a++g  ++++
  CTQ27684.1  47 DGPFSPFPGVDRVITLLAGQPLRLCGENIdqplaLWQPWAFPGEWALSSVGiVAPGLDFNIMtQRGRASATVQVVSDLQCPASEGVAYVLQ 137
                 46**********************99998899999*******99*98776535779******66889999999999999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1450.41
//
Query:       CTQ27685.1  [L=476]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-53  181.9  42.0    4.4e-53  180.6  42.0    1.5  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.6  42.0   2.4e-57   4.4e-53       1     440 []      26     448 ..      26     448 .. 0.92

  Alignments for each domain:
  == domain 1  score: 180.6 bits;  conditional E-value: 2.4e-57
  Transp_cyt_pur   1 pvpeeeRtwktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvv 95 
                     ++pe+eR++ ++  f++W+g nl i+++v+gal+++lg +  +s++  +vg+++ga++++l++l+G+++Glp++ilsRa+fG++g+++pl+l+ v
      CTQ27685.1  26 YIPESERHGHPFSQFTLWFGGNLQITAIVTGALAVVLGGDVVWSLVGLLVGQMLGAAVMSLHALQGPRLGLPQMILSRAQFGVFGAVVPLVLVCV 120
                     69********************************************************************************************* PP

  Transp_cyt_pur  96 iaivwfgvqawiGsealllmlgkifgkwleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaegGpv 190
                     ++i++ ++ ++++++a++ +l++                   +++++if+++ +vi +lg + i k+ ++a+++  +a++ + i++l  a+++++
      CTQ27685.1 121 MYIGFSASGTVLAGQAMAKLLNIS-----------------HVAGMLIFSAIIIVIAVLGYKVIHKLGKLASIVGILAFVYMFITLLLSADLSAL 198
                     *********************988.................356799*********************************************999 PP

  Transp_cyt_pur 191 ldkavklgkselflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaa.yganawspldilakfdetagv 284
                     +++   ++ +  fl av +  +  +++ + ++D++ry+++  s++k+  +++++++  +   + l++  a++a  +++  +++ +++   + a  
      CTQ27685.1 199 AHNN-HFS-LPTFLLAVSLSSSWQIAFCPYVSDYSRYLPRDVSATKTWCSVFFGTVLGTQTSMTLGVLTAAIAgSAFPGHEVSYLVGLGKSQAMA 291
                     9966.344.33899999999999999999999*********99999988888777777777777777666666566666777767788888899* PP

  Transp_cyt_pur 285 llililvalaqlgvnisanllsagldlaallP.....kkinikrgsliaavialvivpwkllsssskl..ftaflsllavflspvagviiadyfv 372
                     ++i++ +++ ++ ++  +++ s+++ + +++      + ++ k ++ ++ ++ ++ +++ lls+ ++l  ft fl +l +f+ p+ ++ + dy+ 
      CTQ27685.1 292 MVIYFAICFGKITFTTLNAYGSFMSLT-TIVSafrrqTVLSQKCRIAFVVLMVTASCIIALLSEPAFLkhFTHFLLFLLAFFVPWSAICLTDYYL 385
                     ***************999999998754.444447899999******************************************************* PP

  Transp_cyt_pur 373 vrrgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvgikvvkgaeklfdlsylvG 440
                     + +g + + al +  ++ +Y     +N+ a+  yivG++++l++++ +     +  ++ + d+s+++G
      CTQ27685.1 386 ISKGAIDIPALSD--PQQRYG---FWNLYAITLYIVGVLIQLPFIENPLFHGSLTWIFAGNDVSWIIG 448
                     *************..*****9...79********************9999****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1063  (0.0592894); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3460.92
//
Query:       CTQ27686.1  [L=269]
Description: antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-32  112.5   0.0    3.2e-32  111.9   0.0    1.3  1  ABC_tran      ABC transporter
    5.3e-06   26.7   0.1    3.2e-05   24.2   0.1    2.0  1  AAA_22        AAA domain
    2.4e-05   23.9   0.5    0.00049   19.6   0.5    2.1  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00013   21.9   0.1    0.00064   19.7   0.0    1.9  2  RsgA_GTPase   RsgA GTPase
    0.00036   20.4   0.0    0.00039   20.2   0.0    1.2  1  AAA_15        AAA ATPase domain
    0.00093   18.9   0.0     0.0019   17.9   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
     0.0026   17.6   0.0     0.0065   16.3   0.0    1.7  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0027   17.8   0.0     0.0043   17.2   0.0    1.3  1  DUF87         Helicase HerA, central domain
     0.0027   17.4   0.1      0.038   13.7   0.0    2.1  2  IstB_IS21     IstB-like ATP binding protein
     0.0031   17.4   0.2     0.0057   16.5   0.2    1.4  1  DUF3652       Huntingtin protein region
     0.0068   16.9   0.1      0.014   15.9   0.1    1.5  1  AAA_23        AAA domain
  ------ inclusion threshold ------
      0.016   15.1   0.1      0.036   14.0   0.1    1.5  1  NACHT         NACHT domain
      0.025   14.3   0.0      0.074   12.8   0.0    1.7  2  AAA_24        AAA domain
      0.027   13.3   0.3       0.65    8.7   0.1    2.1  2  ABC_ATPase    Predicted ATPase of the ABC class
      0.028   14.3   0.0       0.05   13.5   0.0    1.4  1  DUF2847       Protein of unknown function (DUF2847)
      0.028   14.8   0.0       0.36   11.3   0.0    2.2  2  AAA           ATPase family associated with various cellular 
      0.028   14.8   0.0      0.046   14.1   0.0    1.5  1  AAA_16        AAA ATPase domain
      0.044   14.0   0.0      0.084   13.0   0.0    1.6  1  AAA_33        AAA domain
      0.052   13.9   0.2       0.16   12.3   0.1    2.0  2  RNA_helicase  RNA helicase
      0.052   12.7   0.0      0.064   12.4   0.0    1.1  1  G-alpha       G-protein alpha subunit
      0.061   12.0   0.0        0.3    9.7   0.0    1.8  2  AAA_13        AAA domain
      0.082   11.8   0.0       0.11   11.4   0.0    1.3  1  AAA_10        AAA-like domain
       0.12   11.8   0.0       0.18   11.2   0.0    1.3  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.13   10.0   0.0       0.21    9.3   0.0    1.3  1  RDV-p3        Rice dwarf virus p3
       0.14   12.2   0.1       0.27   11.3   0.1    1.7  1  MMR_HSR1      50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   4.5e-35   3.2e-32       2     136 ..      31     178 ..      30     179 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 4.5e-35
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS..--S-TTSBHHHH...........HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx...........xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe..pqlfpeltvren...........esdeeiek 87 
                 k +s++l+e +++ai+GenG+GKStL+k+lag+++pt+Ge+l+d+++l+  + +  +++i++++q+  ++l+p+ ++ +            +++++ ++
  CTQ27686.1  31 KPLSFTLRERQTLAIIGENGSGKSTLAKMLAGMVEPTSGELLIDDHPLTFGDYSYRSQKIRMIFQDpsTSLNPRQRISQIldfplrlntdlDAEARQKQ 129
                 789***************************************************************98899999998888*********9999999*** PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++l++++l  ++v++ p+ L  Gqkqr+ laral+ +pk++++DE+ 
  CTQ27686.1 130 IIDTLRMVGLLPDHVSYYPHMLAPGQKQRLGLARALILRPKVIVCDEAL 178
                 ***********************************************97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   4.5e-08   3.2e-05       4     130 ..      39     209 ..      37     215 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 4.5e-08
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee..............erpevvfvtlpsstsskdllrellralglelka.................. 70 
                 +++ l+++Ge G+GK+tl+++l+   +  +   e               r++ +++  + +++s + ++++ ++l+ +l                    
  CTQ27686.1  39 ERQTLAIIGENGSGKSTLAKMLAGMVE--PTSGElliddhpltfgdysYRSQKIRMIFQDPSTSLNPRQRISQILDFPLRLntdldaearqkqiidtlr 135
                 67889*******************984..3333378999********9777777776666666666666666666655544556777888899998888 PP

      AAA_22  71 ...erlsseellealeqalrarav.........ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvGt 130
                       +   ++ ++    ++++          +++++ DEa   l+   + ++++   +l++  ++g++ i+v +
  CTQ27686.1 136 mvgLLPDHVSYYPHMLAPGQKQRLglaralilrPKVIVCDEALAsLDmsmRSQLINLMLELQE--KQGISYIYVTQ 209
                 88844444444444444444444466666688889******9998977444777777788888..99999888866 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.5   6.9e-07   0.00049      24     213 ..      40     225 ..      29     231 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.9e-07
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--...BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk...skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevt 119
                 ++  ai+G+NGSGKs l   +    G      +  ++ + li     +    s  + ++ ++f++++ +l   +++  is+ +    + +  ++  e++
  CTQ27686.1  40 RQTLAIIGENGSGKSTLAKMLA---G-----MVEPTSGELLIDDhplTFGDYSYRSQKIRMIFQDPSTSL---NPRQRISQILDFPLRLNTDLD-AEAR 126
                 56679************99883...3.....34556666666666555567888999999***9999993...333334444433333344554.5789 PP

                 HHHHHHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 120 kkevsellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklv 209
                 +k++ + l+++g+ ++       +L  G+k+ + la  +     +p+ + + De  a LD + ++++ +l+ e +++    +i ++ + +m+++ +  v
  CTQ27686.1 127 QKQIIDTLRMVGLLPDhvsyyphMLAPGQKQRLGLARALI---LRPK-VIVCDEALASLDMSMRSQLINLMLELQEKqgISYIYVTQHLGMMKHISDQV 221
                 99999********99988888889999*999877765433...4555.5688**********9999998777655443578899999999999987777 PP

                 EEEE CS
                 xxxx RF
       SMC_N 210 gvtk 213
                  v++
  CTQ27686.1 222 LVMH 225
                 6665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     9e-07   0.00064      70     124 ..      10      65 ..       2      76 .. 0.83
   2 ?   -0.5   0.0       1.4     1e+03       8      52 ..     166     207 ..     162     228 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 9e-07
                  HHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  70 eelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpele 124
                  +  +++ y++   + +t e+++ l+  l++ +t +++G+ G GKStL ++l++  e
   CTQ27686.1  10 QLSKTFRYRTGWFHRQTVEAVKPLSFTLRErQTLAIIGENGSGKSTLAKMLAGMVE 65 
                  5556677888888889999**********999*******************98755 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.4
                  ETTTTEES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEE CS
  RsgA_GTPase   8 lvrpkvaNvdqllivvslkepelslnlldrfLvlaeekgiepviv 52 
                  ++rpkv  +d++l   sl+  +++++l++ +L l e++gi+ + v
   CTQ27686.1 166 ILRPKVIVCDEAL--ASLD-MSMRSQLINLMLELQEKQGISYIYV 207
                  5666666666664..4566.6678888888888888888776544 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.5e-07   0.00039      25      83 ..      42      96 ..      32     202 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.5e-07
      AAA_15 25 ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdvef 83
                +  +iG+N+sGKS+++++l  + + +    + ++ i+++ l   ++ ++s++i+  ++ 
  CTQ27686.1 42 TLAIIGENGSGKSTLAKMLAGMVEPT----SGELLIDDHPLTFGDYSYRSQKIRMIFQD 96
                678*******************9998....78899999999999999999999988877 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.6e-06    0.0019      17      38 ..      35      56 ..      22      64 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.6e-06
      AAA_29 17 ieidlkgatlltGpsGsGKSTl 38
                ++++++++  ++G++GsGKSTl
  CTQ27686.1 35 FTLRERQTLAIIGENGSGKSTL 56
                3445455889***********9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   9.1e-06    0.0065       3      22 ..      44      63 ..      43     131 .. 0.73
   2 ?   -2.0   0.0       3.4   2.4e+03     240     296 ..     154     208 ..     147     214 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.1e-06
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                ++iG NgsGKS+L + l ++
  CTQ27686.1 44 AIIGENGSGKSTLAKMLAGM 63
                79*************99776 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.4
      AAA_21 240 GtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltT 296
                 G+k+ l+l+ al+ ++   ++++ DE  ++L+ ++ + l+ l+ el++  g+  i +T
  CTQ27686.1 154 GQKQRLGLARALILRP---KVIVCDEALASLDMSMRSQLINLMLELQEkQGISYIYVT 208
                 5666667777777777...788888888999999999999888555543666666666 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     6e-06    0.0043      26      85 ..      43      99 ..      39     135 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6e-06
       DUF87 26 lAilgsTGsGKSntvavLleellekkgatililDpH....GEYgkalekllsekvkvitpspsa 85
                lAi+g+ GsGKS++++ +l+ ++ ++ +  l++D H    G+Y+  +     +k+++i ++ps+
  CTQ27686.1 43 LAIIGENGSGKSTLAK-MLAGMV-EPTSGELLIDDHpltfGDYSYRS-----QKIRMIFQDPST 99
                8***********9987.568999.99999999999988888998888.....555555555433 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.3e-05     0.038      30      68 ..      22      61 ..       4      65 .. 0.78
   2 ?    1.4   0.0      0.33   2.4e+02     101     143 ..     161     202 ..     150     223 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.3e-05
   IstB_IS21 30 ldkrkvkeLatlsfi.ekkenivllGpsGvGKshlaialg 68
                 ++++v+++  lsf+ ++++ ++++G  G GKs la  l+
  CTQ27686.1 22 FHRQTVEAVKPLSFTlRERQTLAIIGENGSGKSTLAKMLA 61
                456778899999*9637899****************8876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.33
   IstB_IS21 101 ralkrllkvdllilDdlgllpldqaeaellfeviekryerrsi 143
                  a + +l++++++ D+ +l  ld   +++l +++ +  e++ i
  CTQ27686.1 161 LARALILRPKVIVCDE-ALASLDMSMRSQLINLMLELQEKQGI 202
                 4555678889988888.69999999999999999888888765 PP

>> DUF3652  Huntingtin protein region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   7.9e-06    0.0057       1      30 [.     164     192 ..     164     200 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.9e-06
     DUF3652   1 aiigiPrIiqLcdglmASgqpalrheipal 30 
                 a+i  P++i  cd+  AS++ ++r+++  l
  CTQ27686.1 164 ALILRPKVI-VCDEALASLDMSMRSQLINL 192
                 799******.***************99766 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1     2e-05     0.014      17      37 ..      35      58 ..      20      64 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-05
      AAA_23 17 F...skgltlItGpNGaGKTTild 37
                F   ++   +I+G+NG+GK+T+  
  CTQ27686.1 35 FtlrERQTLAIIGENGSGKSTLAK 58
                2446667789***********976 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1     5e-05     0.036       2      21 ..      42      61 ..      41      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5e-05
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                ++++ Ge+GsGK+tL++ la
  CTQ27686.1 42 TLAIIGENGSGKSTLAKMLA 61
                789*************9987 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0    0.0001     0.074       3      22 ..      41      60 ..      39      76 .. 0.84
   2 ?   -1.8   0.0         3   2.2e+03     159     171 ..     213     225 ..     185     249 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.0001
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                + ++i+G++g+GK+tlak+l
  CTQ27686.1 41 QTLAIIGENGSGKSTLAKML 60
                5789**************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3
      AAA_24 159 elkeevDlvlran 171
                  +k+++D vl ++
  CTQ27686.1 213 MMKHISDQVLVMH 225
                 3455666666555 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.058        41     247     265 ..      43      61 ..      36      75 .. 0.75
   2 ?    8.7   0.1   0.00091      0.65     376     420 ..     189     233 ..     172     256 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.058
                 EEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 247 tlIvGggfhGKsTLLeAle 265
                  +I+G +  GKsTL + l+
  CTQ27686.1  43 LAIIGENGSGKSTLAKMLA 61 
                 4688888888888887665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00091
                 HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE-H CS
  ABC_ATPase 376 lvdrvrelykklgvstilvvggsgdyldvAdtvilmeeykpkdvt 420
                 l++++ el +k g+s i v+  +g + +++d+v++m++ ++ +  
  CTQ27686.1 189 LINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHNGEVVERG 233
                 7889999*****************************997766655 PP

>> DUF2847  Protein of unknown function (DUF2847)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.9e-05      0.05      51      98 ..     189     238 ..     173     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.9e-05
     DUF2847  51 vkvylldviesrevSn.eiaeklg.vkHeSPQvllikngevvwdashsaI 98 
                 +   +l+++e++ +S  ++ ++lg  kH S Qvl+++ngevv   s  ++
  CTQ27686.1 189 LINLMLELQEKQGISYiYVTQHLGmMKHISDQVLVMHNGEVVERGSTADV 238
                 4567899********647999998358***************99998877 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0005      0.36       3      52 ..      45      96 ..      43     110 .. 0.67
   2 ?    1.2   0.0      0.63   4.5e+02      58     114 ..     168     213 ..     146     226 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0005
                EESSTTSSHHHHHHHHHHHHT...HEEEEEETTTCSSSSTTHHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakelg...vefleisgsellskyvgesekkirelfke 52
                ++G  G GK++lak +a  ++    e+l  + +  + +y + +++kir++f++
  CTQ27686.1 45 IIGENGSGKSTLAKMLAGMVEptsGELLIDDHPLTFGDY-SYRSQKIRMIFQD 96
                78***************9974221334333333333443.4456667777776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.63
                 TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGG CS
         AAA  58 kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdk 114
                 +p++++ DE+ a    +          + +qL++ + ++++k++ +  i +t++  +
  CTQ27686.1 168 RPKVIVCDEALASLDMS----------MRSQLINLMLELQEKQG-ISYIYVTQHLGM 213
                 47777777765555554..........77889998888888766.888888887444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   6.4e-05     0.046      25      51 ..      41      67 ..      24     205 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.4e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekd 51
                + + ++Ge G+GKs+l+++l+  +e +
  CTQ27686.1 41 QTLAIIGENGSGKSTLAKMLAGMVEPT 67
                6799**************999655555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00012     0.084       4      33 ..      45     130 ..      43     208 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00012
      AAA_33   4 lvGlpGsGKstlaerl...lkklgavllssdt.....................................................l 33 
                 ++G +GsGKstla+ l   ++++ ++ll  d                                                      +
  CTQ27686.1  45 IIGENGSGKSTLAKMLagmVEPTSGELLIDDHpltfgdysyrsqkirmifqdpstslnprqrisqildfplrlntdldaearqkqI 130
                 6899**********994434444489888888888888887777555555555555555555555555555555555555555552 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00023      0.16       3      25 ..      45      67 ..      43     119 .. 0.74
   2 ?   -1.8   0.0       5.6     4e+03      51      73 ..     170     193 ..     167     231 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00023
  RNA_helicase  3 lyGpsgeGKStlakeLakallkk 25
                  + G++g GKStlak La  ++ +
    CTQ27686.1 45 IIGENGSGKSTLAKMLAGMVEPT 67
                  89*************98877633 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.6
  RNA_helicase  51 evvvidDfgqvkdee.npsdlael 73 
                   +v+v+d+  ++ d +   + ++ +
    CTQ27686.1 170 KVIVCDEALASLDMSmRSQLINLM 193
                   556666665555553222233333 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.9e-05     0.064      24      89 ..      41     125 ..      25     221 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.9e-05
                 EEEEEEESTTSSHHHHHHHHHHHCS--.................--HHHH.HC.CHHHHHHHHHHHHHHHHHHHHHTT....... CS
     G-alpha  24 vkllllGqseSGKsTilkqlkllykkg.................fseeel.at.wraviqlnivrsiktilealesleselsesf 89 
                  +l ++G+++SGKsT+ k l  + +++                 ++ +++  +   +   ln  + i++il+   +l+ +l+++ 
  CTQ27686.1  41 QTLAIIGENGSGKSTLAKMLAGMVEPTsgelliddhpltfgdysYRSQKIrMIfQDPSTSLNPRQRISQILDFPLRLNTDLDAEA 125
                 47999****************9998887788877777775555555554422322335555666666666666666666664333 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00042       0.3      21      39 ..      45      63 ..      40      75 .. 0.87
   2 ?   -0.3   0.0      0.45   3.2e+02     525     578 ..     167     218 ..     159     227 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00042
      AAA_13 21 iYGwNGaGKTtLSrllrsl 39
                i G NG+GK+tL+++l+ +
  CTQ27686.1 45 IIGENGSGKSTLAKMLAGM 63
                67**************986 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.45
      AAA_13 525 gkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevk 578
                    k++v D    SLD  +    ++l+ +   +k+ ++ +++  H l  +k ++
  CTQ27686.1 167 LRPKVIVCDEALASLDMSMRSQLINLMLELQ-EKQGISYIYVTQH-LGMMKHIS 218
                 5789***************999999999997.8999999888544.66666655 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.11      23      55 ..      42      74 ..      31     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
      AAA_10 23 asliiGdlGnGKSvlakllvlyisllggkalii 55
                  +iiG+ G GKS lak+l   +    g +li 
  CTQ27686.1 42 TLAIIGENGSGKSTLAKMLAGMVEPTSGELLID 74
                459****************98888777777765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00025      0.18      23      51 ..      41      69 ..      26      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00025
  Mg_chelatase 23 HnlllvGppGsGKtmlakrlpsllpplse 51
                    l ++G  GsGK+ lak l++++ p s 
    CTQ27686.1 41 QTLAIIGENGSGKSTLAKMLAGMVEPTSG 69
                  56889*****************9988765 PP

>> RDV-p3  Rice dwarf virus p3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00029      0.21     701     750 ..     191     241 ..     180     251 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00029
      RDV-p3 701 nldrvildqvetvynymeqltsii.pivdhfyvvknsgivdrgsvnpvlaa 750
                 nl   + ++    y y++q + ++  i d+  v++n  +v+rgs++ vla+
  CTQ27686.1 191 NLMLELQEKQGISYIYVTQHLGMMkHISDQVLVMHNGEVVERGSTADVLAS 241
                 5555555555566889999888873699*********************98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00038      0.27       2      23 ..      43      64 ..      42     210 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00038
                EEEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgek 23
                 ai+G   +GKStL + l g +
  CTQ27686.1 43 LAIIGENGSGKSTLAKMLAGMV 64
                69***************99843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2014.68
//
Query:       CTQ27687.1  [L=330]
Description: antimicrobial peptide transporter subunit; ATP-binding component of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-30  104.0   0.0    4.9e-28   98.3   0.0    2.1  2  ABC_tran   ABC transporter
    1.7e-17   63.7   0.0    4.6e-17   62.3   0.1    1.7  2  oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal reg
    1.9e-07   31.2   1.9      8e-06   25.9   0.2    2.2  2  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
    0.00026   20.5   0.0    0.00071   19.1   0.0    1.6  1  SMC_N      RecF/RecN/SMC N terminal domain
     0.0048   17.3   0.1        0.2   12.1   0.0    2.4  3  AAA        ATPase family associated with various cellular act
     0.0085   16.4   0.1        2.5    8.4   0.0    2.2  2  AAA_22     AAA domain
  ------ inclusion threshold ------
      0.014   15.9   0.0        3.8    8.1   0.0    2.2  2  AAA_18     AAA domain
      0.028   14.8   0.1       0.11   12.9   0.1    1.9  1  AAA_16     AAA ATPase domain
      0.096   12.7   0.0       0.25   11.3   0.0    1.6  1  AAA_5      AAA domain (dynein-related subfamily)
       0.18   11.6   0.1       0.36   10.6   0.1    1.5  1  AAA_29     P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.0   2.7e-31   4.9e-28       2     137 .]      24     187 ..      23     187 .. 0.96
   2 ?    3.8   0.0     0.042        76      27      69 ..     197     239 ..     194     274 .. 0.85

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 2.7e-31
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx........... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren........... 79 
                 ++vsl+l ege+ ++vGe+G+GKS ++k+++g +k+    t++++++d+ dl +    ++++   +++++++qe  ++l+p  +++++           
  CTQ27687.1  24 DRVSLTLTEGEIRGLVGESGSGKSLIAKAICGVTKDnwrvTADRMRFDDIDLLRlsnrERRKLIGHNVSMIFQEpqSCLDPSERIGQQliqsipgwtyk 122
                 78********************************99899999999999999999999999999***********888899***9***9*********** PP

                 ........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                         ++++++ ++l+++g+k+ +++ ++s p++L +G+ q+v++a al+++p+ll++DEpt+
  CTQ27687.1 123 grwwqrlgWRKRRAIELLHRVGIKD-HKDAMRSFPYQLTEGECQKVMIAIALANQPRLLIADEPTN 187
                 ************************9.88999999*******************************8 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.042
                 HHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  27 LlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepq 69 
                 +++ll++l ++++ +ill ++dl++ ++   + ++ ++ q+ +
  CTQ27687.1 197 IIRLLTRLNQNNNTTILLISHDLQMLSKWADKINVMYCGQTVE 239
                 799**********************777777777777777654 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0        10   1.8e+04      20      31 ..     111     122 ..     110     130 .. 0.71
   2 !   62.3   0.1   2.6e-20   4.6e-17       1      65 []     238     305 ..     238     305 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 10
   oligo_HPY  20 aLlrsvprldre 31 
                  L++s+p  + +
  CTQ27687.1 111 QLIQSIPGWTYK 122
                 799999976655 PP

  == domain 2  score: 62.3 bits;  conditional E-value: 2.6e-20
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd...klekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE gps++l++ p+HPYT+aL+r++p++ +      +l +++g  p+le+l+ GC+  pRCp+a+ eC
  CTQ27687.1 238 VESGPSEELITLPHHPYTQALIRAIPDFGSAMPhksRLNTLPGAIPLLEQLPIGCRLGPRCPYAQREC 305
                 8*************************98754434449******************************* PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.011        20       4      19 ..      38      53 ..      36      83 .. 0.82
   2 !   25.9   0.2   4.4e-09     8e-06     238     302 ..     160     222 ..     125     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.011
      AAA_21  4 liGpNgsGKSnLLdal 19
                l+G  gsGKS + +a+
  CTQ27687.1 38 LVGESGSGKSLIAKAI 53
                9**************9 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 4.4e-09
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSplll 302
                  +G  +   +  a++ a+++ +ll+ DEp n ++P  ++ +++ll +++++n++ ++l +H+   l
  CTQ27687.1 160 TEGECQK--VMIAIALANQP-RLLIADEPTNAMEPTTQAQIIRLLtRLNQNNNTTILLISHDLQML 222
                 5555555..33455555565.************************655556**********98765 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     4e-07   0.00071      24     213 ..      33     233 ..      20     240 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4e-07
                 SSEEEEEESTTSSHHHHHHHHHHHCTT....TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE....EEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGer...sakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkge....seyking 115
                  ++  +vG+ GSGKs +  Ai+ v  ++   +a  +r ++++ l  +++e++++   +v+++f+++++     +++  i ++++++         + ++
  CTQ27687.1  33 GEIRGLVGESGSGKSLIAKAICGVTKDNwrvTADRMRFDDIDLLRLSNRERRKLIGHNVSMIFQEPQSC---LDPSERIGQQLIQSIPgwtyKGRWWQR 128
                 467789***************888776544456688888887776667899999999*********998...333334444444443321112334677 PP

                 EEE-HHHHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
       SMC_N 116 kevtkkevsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislreemle 203
                    +k+   ell+++gi+ +         +L  Ge + v++a+ +A q      l + De   a+  +  +++ +ll   ++++n+ ++ is++ +ml+
  CTQ27687.1 129 LGWRKRRAIELLHRVGIKDHkdamrsfpyQLTEGECQKVMIAIALANQ----PRLLIADEPTNAMEPTTQAQIIRLLTrlNQNNNTTILLISHDLQMLS 223
                 888999************999**************9999999988754....458999*****************999555667799***********9 PP

                 C-SCEEEEEE CS
                 xxxxxxxxxx RF
       SMC_N 204 kadklvgvtk 213
                 k    + v+ 
  CTQ27687.1 224 KWADKINVMY 233
                 9866666654 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00011       0.2       3      25 ..      38      60 ..      37     104 .. 0.63
   2 ?   -2.7   0.0       4.2   7.5e+03     101     115 ..     166     180 ..     146     185 .. 0.65
   3 ?    2.2   0.3      0.13   2.3e+02      79     116 ..     187     223 ..     172     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
                EESSTTSSHHHHHHHHHHHHTHE CS
         AAA  3 lyGppGtGKTllakavakelgve 25
                l+G  G GK+l+aka++  ++ +
  CTQ27687.1 38 LVGESGSGKSLIAKAICGVTKDN 60
                79***************997522 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.2
                 STEEEEEEESSGGGS CS
         AAA 101 skvivigatnrpdkl 115
                 + +i i+ +n+p+ l
  CTQ27687.1 166 KVMIAIALANQPRLL 180
                 347788888888766 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.13
                 CHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGST CS
         AAA  79 seeeervvnqLlteldgvkkkeskvivigatnrpdkld 116
                 +  e ++++q+++ l +++++ +++++++++++ ++l+
  CTQ27687.1 187 NAMEPTTQAQIIRLLTRLNQN-NNTTILLISHDLQMLS 223
                 566778999999999999996.6699999999999886 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0014       2.5      10      24 ..      38      52 ..      33     115 .. 0.91
   2 !    5.9   0.1     0.008        14      60     133 ..     139     219 ..     128     222 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
      AAA_22 10 vtGesGtGKTtllrr 24
                ++GesG+GK++ ++ 
  CTQ27687.1 38 LVGESGSGKSLIAKA 52
                79*********9986 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.008
      AAA_22  60 llralglelka.......erlsseell.ealeqalraravielliiDEaqhlr...seealeeLrsllnlsrkgvqliLvGtpel 133
                 ll+ +g + ++       + l++ e+   +++ al ++   +lli DE  + +   +++++  L ++ln  + + + iL + ++l
  CTQ27687.1 139 LLHRVGIKDHKdamrsfpYQLTEGECQkVMIAIALANQ-P-RLLIADEPTNAMeptTQAQIIRLLTRLN--QNNNTTILLISHDL 219
                 55555555555667777777888888844444445555.4.6*********554543555555557777..77777777776666 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0021       3.8       3      94 ..      38     128 ..      37     142 .. 0.80
   2 ?    5.8   0.0     0.011        20      33      95 ..     175     230 ..     157     249 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0021
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldaleenss.....aleegknlvidghlaeleseaakdi 94 
                 l G +G+GK+ +ak++   +  +++ +  ++ +++++++ +  l+ s+r++++    +++ + + ++     +++ g+  +i++++++ ++ +++++
  CTQ27687.1  38 LVGESGSGKSLIAKAIC--G--VTKDNWRVTADRMRFDDIDL-LRLSNRERRKLIGHNVSMIFQEPQscldpSERIGQQ-LIQSIPGWTYKGRWWQR 128
                 7899************2..2..55667777777777777777.999999999999999999988888877766666666.99999999999888875 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.011
      AAA_18  33 kenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakdik 95 
                  + +ll+ ++p   +  +   + +  +ll+ l++n++      ++++ +h  +++s  a +i+
  CTQ27687.1 175 NQPRLLIADEPT--NAMEPTTQAQIIRLLTRLNQNNN-----TTILLISHDLQMLSKWADKIN 230
                 444444444444..8889999999999*******997.....999*********999888877 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   5.9e-05      0.11      29     107 ..      38     185 ..      22     249 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.9e-05
      AAA_16  29 lsGesGvGKsslvrellralekdggif..lrgkcdqlesaipysalaqalareellrqllde.........aesaeleawrekleeala.......... 106
                 l+GesG+GKs +++++   ++kd++ +   r ++d+         l+++  ++e  + ++ +         +      + +e      +          
  CTQ27687.1  38 LVGESGSGKSLIAKAIC-GVTKDNWRVtaDRMRFDDI-------DLLRLS-NRERRKLIGHNvsmifqepqS----CLDPSE------Rigqqliqsip 117
                 89***************.7999988885566666666.......233333.323333333332224432221....111111......12222223444 PP

      AAA_16 107 ...................................................................a 107
                                                                                    +
  CTQ27687.1 118 gwtykgrwwqrlgwrkrraiellhrvgikdhkdamrsfpyqltegecqkvmiaialanqprlliadeP 185
                 55556666666666666655566666655555555555555555555555555555555555443333 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00014      0.25       4      29 ..      38      63 ..      37      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
                EE--SSSSHHHHHHHGGGGBS--EEE CS
       AAA_5  4 LvGppGtgKselaerlaaalnrevey 29
                LvG++G+gKs +a+ ++ ++++++ +
  CTQ27687.1 38 LVGESGSGKSLIAKAICGVTKDNWRV 63
                8******************9555443 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1    0.0002      0.36      15      41 ..      26      52 ..      18      57 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
      AAA_29 15 htieidlkgatlltGpsGsGKSTllDA 41
                 ++++++ ++  l+G+sGsGKS +  A
  CTQ27687.1 26 VSLTLTEGEIRGLVGESGSGKSLIAKA 52
                5556664447789*********87666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2322.60
//
Query:       CTQ27688.1  [L=296]
Description: antimicrobial peptide transporter subunit; permease component of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-19   70.0  13.8    2.1e-19   70.0  13.8    1.5  2  BPD_transp_1     Binding-protein-dependent transport system i
    1.6e-09   37.6   0.0    1.6e-09   37.6   0.0    3.4  4  OppC_N           N-terminal TM domain of oligopeptide transpo
  ------ inclusion threshold ------
      0.066   12.6   0.0       0.11   11.9   0.0    1.3  1  Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal 


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.85   5.1e+03     128     160 ..      74     104 ..      58     112 .. 0.52
   2 !   70.0  13.8   3.5e-23   2.1e-19       1     180 [.     113     292 ..     113     296 .] 0.94

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.85
  BPD_transp_1 128 leflgswpGlgtllleailgydyseisnggvla 160
                   ++f+++   lg+ +l+ +l+   +     g+++
    CTQ27688.1  74 VSFFLGTDDLGRDVLSRLLSGAAPTVG--GAFV 104
                   455554444555555555555555222..2222 PP

  == domain 2  score: 70.0 bits;  conditional E-value: 3.5e-23
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilg.hlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g++lG++a+ + ++  + ++  + ++lls+Ps++lai++v        +g hl  +++++ l  ++ +vr +++++ ++l+k+++ aar++Gas+  
    CTQ27688.1 113 GLVLGVIAG-STHGLRSAVMNHILDTLLSIPSLLLAIIVV------AFAGpHLSHAMFAVWLALLPRMVRSVYSMVHDELEKEYIIAARLDGASTLN 202
                   799******.******************************......78886777778888888888889999999999******************* PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqrlld 180
                   i+   +lPn+++ ++t +  a+  ++ + ++l fl     lg +l ++++g ++  ++          + + +a+ ++vll+nl+ d + r++ 
    CTQ27688.1 203 ILLFAILPNIASGLVTEITRALSMAILDIAALGFLD----LGAQLPSPEWGAMLGDALeliyvapwtvMLPGAAIMLSVLLVNLLGDGIRRAII 292
                   ************************************....************************************************999886 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   2.6e-13   1.6e-09       3      51 .]      16      66 ..      14      66 .. 0.92
   2 ?   -2.0   0.1      0.61   3.6e+03       4      26 ..      85     107 ..      83     120 .. 0.64
   3 ?    2.8   1.2     0.019   1.1e+02      23      37 ..     145     159 ..     143     171 .. 0.83
   4 ?   -3.1   0.3       1.4   8.3e+03      26      35 ..     203     211 ..     201     214 .. 0.72

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 2.6e-13
      OppC_N  3 wqdawrrFkrNklAvvglvilllllliaifaPliaPydp.qdli.qnllpP 51
                ++ +wr+F  + +A++gl   + lll+++f+ ++aPy+  q++  ++llpP
  CTQ27688.1 16 LRTVWRKFYGDTTAMIGLYGCAGLLLLCVFGGWFAPYGIdQQFLgYQLLPP 66
                6889**********************************996666588*999 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.61
      OppC_N   4 qdawrrFkrNklAvvglvillll 26 
                 +d++ r+++  +  vg +++++l
  CTQ27688.1  85 RDVLSRLLSGAAPTVGGAFVVTL 107
                 56666666655566777777766 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.019
      OppC_N  23 lllllliaifaPlia 37 
                 ll+++++a+ +P+++
  CTQ27688.1 145 LLAIIVVAFAGPHLS 159
                 7899999*****995 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 1.4
      OppC_N  26 llliaifaPl 35 
                 +ll+ai+ P 
  CTQ27688.1 203 ILLFAIL-PN 211
                 7889988.55 PP

>> Chal_sti_synt_N  Chalcone and stilbene synthases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.8e-05      0.11      77     145 ..     209     279 ..     198     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.8e-05
  Chal_sti_synt_N  77 nPeltaemapsldarleivnaevlklgke..aalkalkewGrPkskithlvfvsssevelPGadlklakkl 145
                       P++++   + ++  l ++  ++  lg     a+    ewG    +   l++v+   v lPGa ++l+ +l
       CTQ27688.1 209 LPNIASGLVTEITRALSMAILDIAALGFLdlGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMLSVLL 279
                      58888888888888888888888888854114555668****************************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2194.58
//
Query:       CTQ27689.1  [L=321]
Description: antimicrobial peptide transporter subunit; permease component of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-43  148.8  13.1    1.4e-43  148.8  13.1    2.1  3  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.4     0.051   9.2e+02     103     121 ..       6      24 ..       2      54 .. 0.70
   2 ?   -3.2   0.0      0.33   5.8e+03     102     122 ..      69      89 ..      63      90 .. 0.73
   3 !  148.8  13.1   7.8e-48   1.4e-43       1     181 [.      92     311 ..      92     315 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.051
  BPD_transp_1 103 lPnalppiitglilafggl 121
                   l+ +l  +it+++l+f+g+
    CTQ27689.1   6 LRRLLLLLITLFFLTFVGF 24 
                   5666666666666666654 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.33
  BPD_transp_1 102 vlPnalppiitglilafggll 122
                    l+ ++p ++ + ilafg++l
    CTQ27689.1  69 QLREVFPATMELCILAFGFAL 89 
                   577888888888888888765 PP

  == domain 3  score: 148.8 bits;  conditional E-value: 7.8e-48
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf........................................vilsilghlilpvi 57 
                   gi++G++a+++rnk+ d l++ +  v++s+P+f+la+ll+l+f                                        +i s++ h++lpv+
    CTQ27689.1  92 GIPVGMIAGVMRNKWPDTLISAVALVGFSIPVFWLALLLTLFFsltlgwlpvsgrfdllyevknvtgfalidawlsdspwrheMIVSAARHMVLPVL 188
                   89***************************************99****************************************************** PP

  BPD_transp_1  58 illllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis 154
                   +l++  ++ ++rl+r +  ++ ++++v+aa ++G+sr++i+ ++vl nalpp+i+ l+l+f  +l+ a+++e+++swpGlg++l++ai ++dy++is
    CTQ27689.1 189 TLAVAPTTEVIRLMRISTSEVYDTNYVKAAATRGVSRRKILLRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAIS 285
                   ************************************************************************************************* PP

  BPD_transp_1 155 nggvlalviavlllnlvadilqrlldp 181
                    +gv +++++v+++n+++dil ++ +p
    CTQ27689.1 286 -AGVMVIGALVIIVNVISDILGAMANP 311
                   .*********************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2326.59
//
Query:       CTQ27690.1  [L=547]
Description: antimicrobial peptide transporter subunit; periplasmic-binding component of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-83  278.4   0.0    9.7e-83  278.2   0.0    1.0  1  SBP_bac_5   Bacterial extracellular solute-binding proteins, 
  ------ inclusion threshold ------
      0.031   14.0   0.1      0.072   12.8   0.1    1.6  1  HTH_ABP1_N  Fission yeast centromere protein N-terminal domai


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.2   0.0   1.1e-86   9.7e-83       2     375 ..      79     457 ..      78     459 .. 0.96

  Alignments for each domain:
  == domain 1  score: 278.2 bits;  conditional E-value: 1.1e-86
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSS......B-SHHHHHHHHHHHHTGGGHCTTHHHHHC........TCTEEEEEEEETTEEEEEESSET CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGt......pltAeDvvfsferlldpdtasgyasllee........dqdikkveavddytvrftlkkpn 86 
                 +vp LAes wev d+g ty+f+LR  v F+  +      +++A+Dv+f+f r+ + d+++ + +  ++         +++++v ++d++tv+f+lk+p+
  CTQ27690.1  79 LVPELAES-WEVLDNGATYRFHLRRHVPFQRTAwftptrDFNADDVIFTFGRIFNRDHPWHNVNGSSFpyfdslqfADSVESVRKLDNQTVEFRLKRPD 176
                 79******.7**********************99*****************************99999******************************* PP

                 TTTTTHCHHHHHHHGC...CHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTT CS
   SBP_bac_5  87 alfltllaavpasiak...kaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaepp 182
                 a fl +la + asi +   +a+  +dd+ ++ +++pvgtGP++l ++  gq+++l+r+p Yw +gkp   ++++   +  + r+ +l++Ge+d+ a p 
  CTQ27690.1 177 ASFLWHLATHYASITSaeyAARLTQDDRQEQLDRQPVGTGPFQLSDYRSGQYVRLQRHPGYW-RGKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPA 274
                 *99999999999999999989999**************************************.************************************ PP

                 CCTHCHHHHHTTEEEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHHH CS
   SBP_bac_5 183 psdieqlkeakglkvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLke 281
                 +s++  l++++ l +   +pg+++  lafNt+kpp+d+++vR+Al++Ai+++ +++ +++g+a+ a+s+lp  s+++d++ k    +y+p++A++ Lk+
  CTQ27690.1 275 ASQLTILRDDPRLRL-TLRPGMNIAWLAFNTAKPPLDNPEVRHALALAINNQRLMQSIYYGTAETAASMLPRASWAYDNDAKIT--EYNPQEARARLKA 370
                 ***************.*************************************************************9999986..79*********** PP

                 TT-BCSSTSCEETCEEEEEEEEETTSHHHH.HHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTTCT CS
   SBP_bac_5 282 aGykdgdggglrekklkltlllasgspaek.aiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsssga 375
                  G+++   +       +++ + ++ ++++  ++aeliq+++++iG+kv + +v+  + +++r  d  +d+ l+gw +d+ dpd+f+ p+ls++++
  CTQ27690.1 371 LGLENLTLK-------LWVPTSSQAWNPSPlKTAELIQADMAQIGVKVIIVPVEG-RFQEARLMDMSHDLTLSGWATDSNDPDSFFRPLLSCAAI 457
                 *****9854.......488888888888888************************.9999*******************************9876 PP

>> HTH_ABP1_N  Fission yeast centromere protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     8e-06     0.072      23      55 ..     457     489 ..     449     493 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8e-06
  HTH_ABP1_N  23 rpsqkaliaWFeqeygqkisqstvSeiLSskYa 55 
                   sq++ + W ++e++  ++++ +S+ LSs+ +
  CTQ27690.1 457 IASQTNFAHWCNREFDDVLQKALLSQQLSSRMD 489
                 579***************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3980.43
//
Query:       CTQ27691.1  [L=301]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-17   63.9   0.0    2.2e-17   63.3   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
    2.3e-12   47.2   2.6    2.9e-12   46.8   0.4    2.2  3  NAD_binding_10  NAD(P)H-binding
      2e-06   27.5   0.1    3.5e-06   26.8   0.1    1.4  1  NmrA            NmrA-like family
    3.4e-06   26.4   0.1    7.7e-06   25.2   0.1    1.5  1  RmlD_sub_bind   RmlD substrate binding domain
    8.5e-05   22.8   0.0    0.00022   21.5   0.0    1.6  2  TrkA_N          TrkA-N domain
     0.0013   18.3   0.0      0.012   15.1   0.0    2.1  2  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
     0.0056   15.7   0.0       0.01   14.9   0.0    1.4  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
      0.006   16.2   0.3      0.014   15.1   0.1    1.7  2  ApbA            Ketopantoate reductase PanE/ApbA
     0.0091   15.2   0.0      0.017   14.3   0.0    1.5  1  NAD_binding_4   Male sterility protein
  ------ inclusion threshold ------
      0.049   13.1   0.1       0.08   12.4   0.1    1.3  1  adh_short       short chain dehydrogenase
       0.17   12.0   0.0       0.27   11.4   0.0    1.3  1  DapB_N          Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   1.4e-20   2.2e-17       1     238 [.       3     217 ..       3     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 1.4e-20
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnll 99 
                 i++tGa+GfiGs ++ al++ g++vigl+r +s+ +  + + +e++++ l  +++l + +   ++davih A     ++ +++ a+  ek+ q  l l 
  CTQ27691.1   3 IFLTGASGFIGSRILPALQASGHQVIGLARSESTAQALKAAGAEVHRGTLDAPESLLAGVG--NADAVIHTAF----DHDFSRFAANCEKDRQAILALG 95 
                 789****************************999999999999***********9999998..9*******55....6666666677889999999999 PP

                 HHHHHHTCTEEEEEEEGGGGTSCSSS.S.BSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHTT CS
   Epimerase 100 eaarkagvkrllflsSsevYGkdaeq.p.keettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkileg 196
                 +a+r  g  r l + S ++ G+d +  p +e+     + +  sp  a+ lag +l+ea     g+++ ++rl  +         ++++++++i+++ ++
  CTQ27691.1  96 QALR--GSTRPLVITSGTLMGDDGSGaPaRESFF---NSAHPSPRTASELAGQQLLEA-----GVDVRVVRLPQVHDT-----VRQGLLTCYIERAVAN 179
                 9998..666788888889***9999549677777...335557777899999999997.....9********998554.....4*************** PP

                 SSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEE CS
   Epimerase 197 kqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiy 238
                    v l g+g++++   +v+Dva++++ +l + +a   ge y
  CTQ27691.1 180 G-AVALRGEGSNRWSAAHVDDVARLYVSALLQGAA---GERY 217
                 9.****************************99544...4444 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.4   1.8e-15   2.9e-12       1     150 [.       7     164 ..       7     211 .. 0.74
   2 ?   -2.8   0.0       3.1     5e+03     165     181 ..     222     238 ..     212     241 .. 0.73
   3 ?   -0.7   0.0      0.71   1.1e+03     125     156 ..     265     296 ..     244     300 .. 0.75

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 1.8e-15
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-........--TCC...HHHHHHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsal........ggggk...deegaknivda 84 
                     GA+G +G++++  l a+ gh+v  l+R+++ +++l+ ++g+ev  g +  +e+l + + +adaV+ ++        +       ++++a+ ++  
      CTQ27691.1   7 GASGFIGSRILPALQAS-GHQVIGLARSESTAQALK-AAGAEVHRGTLDAPESLLAGVGNADAVIHTAfdhdfsrfA---AnceKDRQAILALGQ 96 
                     9**************99.5**************997.7******************************665554432...144455667777777 PP

                     HHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHH....HHHHHHHHHHHHSSSEEEEEEE-CEE-ST CS
  NAD_binding_10  85 akeagvkRfvlvsaigvgdevpgefgewnkellkayl....aakraaeellrasgldwTivrpggLtdep 150
                     a +  ++ +v+ s+  +gd+  g+  +  ++++++++     a + a + l + g+d  +vr +   d  
      CTQ27691.1  97 ALRGSTRPLVITSGTLMGDDGSGA--PARESFFNSAHpsprTASELAGQQLLEAGVDVRVVRLPQVHDTV 164
                     778889999999999999854443..33344555554333356666666677789999999999988874 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.1
                     --EEEHHHHHHHHHHHC CS
  NAD_binding_10 165 ggsisradVAdvlvavl 181
                     ++ i+ +d+A+v+++ l
      CTQ27691.1 222 EEGIALRDIAAVIAHGL 238
                     45688889999998766 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.71
                     HHHHHHHHHSSSEEEEEEE-CEE-ST--SEEE CS
  NAD_binding_10 125 raaeellrasgldwTivrpggLtdepttkyrv 156
                      +a     +  l+w  v pg L+d ++ +y+ 
      CTQ27691.1 265 LRASSAWTRERLQWQPVGPGLLEDLQNMEYHK 296
                     566666677899**********9988777765 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   2.1e-09   3.5e-06       1      71 [.       3      71 ..       3      92 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.1e-09
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE- CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsv 71
                I  +Ga+G +G+ +  al ++gh+v  l R   + +a++lk+aG+e+  g ld  esl + + ++d+v+ +
  CTQ27691.1  3 IFLTGASGFIGSRILPALQASGHQVIGLARS--ESTAQALKAAGAEVHRGTLDAPESLLAGVGNADAVIHT 71
                6789**************************7..56899******************************975 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   4.7e-09   7.7e-06       1     233 [.       1     240 [.       1     252 [. 0.77

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 4.7e-09
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre...............eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaea 81 
                    m+i +tGa+G +Gs +  +l+++g++v++l r+               +  l+ +e++ + + +   d+v+++A+ ++  +     +a+ + + +a
     CTQ27691.1   1 MRIFLTGASGFIGSRILPALQASGHQVIGLARSestaqalkaagaevhRGTLDAPESLLAGVGN--ADAVIHTAFDHDFSR----FAANCEKDRQA 90 
                    89****************************9997777655555553333333333333333333..567777776666654....45555556678 PP

                    HHHHHHHHHHCT-EEEEEEEGGGS-.S-...TTS-B-TTS----SSHHHHHHHHHHHHHHHH-SSEEEEEE-SEESSSSS-HHHHHHHHHHH-SEE CS
  RmlD_sub_bind  82 vealAeaaaavgalLihvStDyVFd.Ge...kkrpYeeddetsPlnvYGrtKlaGEqavlaagkkalivRtswvygekgknfvktmlrlakereel 173
                      al +a +    +L+  S     d G+   + + + +++++sP++   ++ laG q   +ag ++ +vR + v +  ++ +++  +++a  +  +
     CTQ27691.1  91 ILALGQALRGSTRPLVITSGTLMGDdGSgapARESFFNSAHPSPRT---ASELAGQQLL-EAGVDVRVVRLPQVHDTVRQGLLTCYIERAVANGAV 182
                    8899999999999***999888765255666566688899999976...79****8865.58999*************************999888 PP

                    EEESS..-EE--EEHHHHHHHHHHHHHHCHH.GGG-EEEE---BS-EEHHHHHHHHHHHHCH CS
  RmlD_sub_bind 174 kvvaD..qlgsPTsardlAevllqllekaaeekelagvyHlanegetswlefArailkeaga 233
                     +        s  +++d+A+  +++l + a+     + yH+++e+ +   ++A +i++ ++ 
     CTQ27691.1 183 ALRGEgsNRWSAAHVDDVARLYVSALLQGAA----GERYHAVAEEGIALRDIAAVIAHGLNL 240
                    8876511455678899999999999988887....889****************99987765 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.3e-07   0.00022       7      80 ..      10      82 ..       5      94 .. 0.90
   2 ?   -3.9   0.0       9.9   1.6e+04       9      26 ..     281     299 ..     279     299 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.3e-07
                SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHH CS
      TrkA_N  7 GrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgddeanilav 80
                G +G++++  L++ g+ +v++  ++e++++ l++ g+ev  g    +e L  ag+ +adavi ++ d++++ +a+
  CTQ27691.1 10 GFIGSRILPALQAsGH-QVIGLARSESTAQALKAAGAEVHRGTLDAPESLL-AGVGNADAVIHTAFDHDFSRFAA 82
                569**********555.8*******************************97.8**********999998888876 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 9.9
                 HHHHHHHHHHH.TTEEEEE CS
      TrkA_N   9 vGrslaeeLse.ggkdvvv 26 
                 vG  l+e L++ ++++v+v
  CTQ27691.1 281 VGPGLLEDLQNmEYHKVTV 299
                 7888999999987777876 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.2e-06     0.012       2      36 ..       5      39 ..       4      70 .. 0.87
   2 ?    1.1   0.0      0.13   2.1e+02     211     261 ..     182     233 ..     158     280 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.2e-06
                   EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TT CS
  GDP_Man_Dehyd  2 iTGiaGfiGsylaelLlekgyevhgivrrsssfnt 36
                    TG +GfiGs ++  L + g++v+g+ r +s+ ++
     CTQ27691.1  5 LTGASGFIGSRILPALQASGHQVIGLARSESTAQA 39
                   6*************************999888654 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.13
                    -EECTTTT-EEEEEEHHHHHHHHHHHHHCSS-.--EEE-TT-EEECHHCHHC CS
  GDP_Man_Dehyd 211 vlylGnldakRdwghvkDyveamwlmlqqdkp.edyviatgethsvrefvel 261
                    v   G+++++ +  hv+D+++ ++ +l q+ + e y     e   +r+++ +
     CTQ27691.1 182 VALRGEGSNRWSAAHVDDVARLYVSALLQGAAgERYHAVAEEGIALRDIAAV 233
                    33348999999999*******9888776655516677777777777777654 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.2e-06      0.01       2      77 ..       5      75 ..       4      90 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.2e-06
   3Beta_HSD  2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslv 77
                +tG++GF+G+++  +L   ++    +v+ l+ s+++ + l+  + + v+ g +   ++l + + ++d+vih+a   
  CTQ27691.1  5 LTGASGFIGSRILPALQASGH----QVIGLARSESTAQALKAAGAE-VHRGTLDAPESLLAGVGNADAVIHTAFDH 75
                69**************99997....899999999997777777777.*************************8655 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   8.4e-06     0.014       6      47 ..       9      51 ..       3      75 .. 0.85
   2 ?   -2.7   0.0       2.5   4.1e+03      13      35 ..     141     162 ..     139     178 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.4e-06
                -SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETT CS
        ApbA  6 aGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseg 47
                +G iGs +   L++ g++v+ ++rs+  ++alk +G ++++ +
  CTQ27691.1  9 SGFIGSRILPALQASGHQVIGLARSEsTAQALKAAGAEVHRGT 51
                588***********************************99877 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.5
                 HHHHHHHHTHCEEEE-SCHHHHH CS
        ApbA  13 laakLakagadvtlilrsrrlea 35 
                  + +L +ag dv ++   + + +
  CTQ27691.1 141 AGQQLLEAGVDVRVVRLPQ-VHD 162
                 5678999999998775555.554 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.1e-05     0.017       1      48 [.       5      50 ..       5      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.1e-05
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekk 48
                   lTGa+GF+G+++l  L  +    +++ l+R++s ++a++   +e+ + 
     CTQ27691.1  5 LTGASGFIGSRILPALQASGH--QVIGLARSESTAQALKAAGAEVHRG 50
                   8***************99987..9**********99998777766655 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   4.9e-05      0.08       3      43 ..       3      43 ..       1      67 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.9e-05
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevake 43
                ++ tGas+ IG  i  +l ++G +v+ ++rse++++++++ 
  CTQ27691.1  3 IFLTGASGFIGSRILPALQASGHQVIGLARSESTAQALKAA 43
                789****************************9988555443 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.27       1      56 [.       1      55 [.       1      87 [. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
                EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-B CS
      DapB_N  1 ikvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgva 56
                +++ ++GasG +G++++ a+++ +++++ +   +++++   k ag  +++g+l+ +
  CTQ27691.1  1 MRIFLTGASGFIGSRILPALQA-SGHQVIGLARSESTAQALKAAGAEVHRGTLDAP 55
                89******************99.888888777777766777778877777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2333.19
//
Query:       CTQ27692.1  [L=277]
Description: putative transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-44  150.5   0.9    4.7e-44  150.5   0.9    1.6  2  MLTR_LBD  MmyB-like transcription regulator ligand binding do
    2.3e-20   72.7   5.5      6e-20   71.4   5.5    1.8  1  HTH_31    Helix-turn-helix domain
      0.002   18.1   0.0     0.0052   16.8   0.0    1.6  1  HTH_3     Helix-turn-helix


Domain annotation for each model (and alignments):
>> MLTR_LBD  MmyB-like transcription regulator ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.51   3.1e+03      93     122 ..      41      77 ..      29     102 .. 0.60
   2 !  150.5   0.9   7.8e-48   4.7e-44       2     165 ..     107     267 ..     106     270 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.51
    MLTR_LBD  93 alvaeLsaaspefarlwarhdvaarrsgr.......k 122
                 + va+L++ sp   ++ +++  +a+++++       +
  CTQ27692.1  41 EEVAQLASISPTWYTWLEQGRGGAPSREVleriargL 77 
                 4566666666666666666666666555543333333 PP

  == domain 2  score: 150.5 bits;  conditional E-value: 7.8e-48
    MLTR_LBD   2 rpalrrlLdalepvPAlVldrrwdvlaaNraaraLlgdpaalpeperNllrlvfldpglrpliedweevaralvarLraeaarrpddpalaalvaeLsa 100
                 +p l+r+Lda+ + PA++ ++ wdv+a+N+ a+++l+d+++lp +erN+lr++f+ p++r ++e w++v + +v  +ra+++r  + ++ ++l+aeL +
  CTQ27692.1 107 TPRLQRVLDAF-TIPAIIRTASWDVIAWNAPAARVLTDYSQLPLAERNVLRRLFTRPEARCTLEGWQRVGQLIVNAFRADVTRMGATKETDQLIAELGQ 204
                 699********.*************************************************************************************** PP

    MLTR_LBD 101 aspefarlwarhdvaarrsgrkrlrhpevgeltldsetlgtpddptlelvvytaePgdesteaal 165
                 +s efar w++hdva +++g kr++hp++g+l+l++++++++++p+  l ++++ P+++++++++
  CTQ27692.1 205 QSVEFARFWQSHDVAGHGEGYKRINHPQMGPLDLEFTSFAVEGRPD--LSLLVFNPATTESQRKI 267
                 **********************************************..6999*******999866 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   5.5     1e-23     6e-20       1      64 []       9      87 ..       9      87 .. 0.99

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 1e-23
      HTH_31  1 aLGalLralRera...............GLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerael 64
                aLG++Lra+R+r                GL++eevA+++ +s++++++lEqGr g ps++vle++ar+l+l+  er++l
  CTQ27692.1  9 ALGDFLRARRQRLdpatfgfpagrrrtpGLRREEVAQLASISPTWYTWLEQGRGGAPSREVLERIARGLRLTTPEREHL 87
                69**********************************************************************99***98 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.6e-07    0.0052       9      52 ..      37      81 ..      32      83 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.6e-07
                THHHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHHTSEH CS
       HTH_3  9 glsqeeLAeklGvsrstisriEnG.ernPsletlkklakaLgvsl 52
                gl +ee+A+++ +s++ ++ +E G   +Ps e+l+++a+ L +++
  CTQ27692.1 37 GLRREEVAQLASISPTWYTWLEQGrGGAPSREVLERIARGLRLTT 81
                999**************************************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2176.87
//
Query:       CTQ27693.1  [L=769]
Description: putative helix-turn-helix AraC-type transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-21   74.2   2.3    1.7e-20   73.0   2.3    1.7  1  HTH_18      Helix-turn-helix domain
    9.3e-15   54.3   0.2    1.9e-06   27.8   0.1    2.7  2  HTH_AraC    Bacterial regulatory helix-turn-helix proteins, A
  ------ inclusion threshold ------
       0.19   10.7   0.0       0.34    9.9   0.0    1.4  1  Gln-synt_C  Glutamine synthetase, catalytic domain


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   2.3   2.9e-24   1.7e-20       2      80 ..     185     262 ..     184     263 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 2.9e-24
                 HHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   2 aaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 aaa  vs+  L+rlf++++g+++++yl++lRl++A ++Ll  t ++v++iA + GF++++ +s+ f++ +g+tP++yr+
  CTQ27693.1 185 AAAEFVSEAWLSRLFRKEVGVSFVQYLTALRLRHAADQLLT-TRKTVQQIAREQGFASTRMMSDLFKRQHGVTPRQYRE 262
                 88899***********************************5.************************************8 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   5.2e-09   3.1e-05       1      42 []     171     212 ..     171     212 .. 0.95
   2 !   27.8   0.1   3.2e-10   1.9e-06       2      41 ..     224     261 ..     222     262 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 5.2e-09
                 HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 +  n++++l++ ++A++  +S+  +srlF+ke+G+++ qy+t
  CTQ27693.1 171 IDANYQRRLSLQEVAAAEFVSEAWLSRLFRKEVGVSFVQYLT 212
                 678*************9999********************96 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 3.2e-10
                 HCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   2 renlstnltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                     +t++t+ +iA e gf S + +s lFk++ G+tP+qyr
  CTQ27693.1 224 L---TTRKTVQQIAREQGFaSTRMMSDLFKRQHGVTPRQYR 261
                 4...899*********************************9 PP

>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   5.7e-05      0.34     111     141 ..     217     247 ..     200     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 5.7e-05
                 HHHHHHHHHHHHHHHHHHHHTT-EEE-SSSS CS
  Gln-synt_C 111 lkaaDnvvtfKrvvkevArkhgltatFmpKp 141
                  +aaD+++t++++v+++Ar++g + t m   
  CTQ27693.1 217 RHAADQLLTTRKTVQQIAREQGFASTRMMSD 247
                 479********************99977654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 5719.04
//
Query:       CTQ27694.1  [L=57]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 450.59
//
Query:       CTQ27695.1  [L=389]
Description: Hippurate hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-32  111.7   0.3    4.9e-32  111.3   0.3    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
      9e-13   48.1   0.3    1.9e-12   47.0   0.3    1.6  1  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   0.3   5.4e-36   4.9e-32       2     205 ..      75     384 ..      74     386 .. 0.90

  Alignments for each domain:
  == domain 1  score: 111.3 bits;  conditional E-value: 5.4e-36
                    EEEES-BSS.TTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEEE CS
                    xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Peptidase_M20   2 lgsHlDvVp.eeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdavf 95 
                    l++++D++p +e + +   p+++++e G+++G+G+d++++ +l a+e+l++ ++      gt+ l+fqp+EE    G + ++e gl++++++da+f
     CTQ27695.1  75 LRADMDALPmQERSGK---PWASQVE-GRFHGCGHDGHTTTLLYAAEYLARTRQF----TGTLQLIFQPAEELL-YGGRVMVEdGLFDQFPCDAIF 161
                    89*******6666655...*****99.**********************997777....79***********66.********888899******* PP

                    EEEEESSSBTCHSTETEEEE............................................................................ CS
                    xxxxxxxxxxxxxxxxxxxx............................................................................ RF
  Peptidase_M20  96 elhieepgileagklaigvv............................................................................ 115
                    +lh + pg +  gk++ + +                                                                            
     CTQ27695.1 162 GLHNM-PGQPL-GKIGLRDGammassdtlhievkgvgghgavpehtvdatlvachitlalqsivsrnitpfepavvtvgsiqaghapniindhvlm 255
                    ***99.99999.9966666699************************************************************************** PP

                    ................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSCEEEEEES.SSBHTHHHH.TTTE..EEEEE CS
                    ................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxx..xxxxx RF
  Peptidase_M20 116 ................................kvevelleggapvtlndsplvkalaeaaeelfgekvelivsg.pggtdarff.agip..tvmif 175
                                                    +++++ + +g pv  nd++  + ++e+a++lfg ++  +v++ +g++d++f+ ++ p  +++ +
     CTQ27695.1 256 kltvrtlneqvretvlqrihdiavaqaesfnaTATLT-HVNGSPVLRNDPATNAMVREVATALFGAEQVGEVKPfMGSEDFAFMlEQHPhgSYFTI 350
                    ******************************8778888.78999999999999************9887777999**********777785566669 PP

                    ESSG....GCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    xxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 176 gpgs....glaHspnEyvdledlekgikvlarll 205
                    g g+     ++H+p  +++++ l +g+++++ l 
     CTQ27695.1 351 GAGDepdrCMVHNPGYDFNDALLLTGAALWCGLT 384
                    9885574555566666666999*****9999876 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.3   2.2e-16   1.9e-12       8     106 ..     187     283 ..     183     286 .. 0.95

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 2.2e-16
                 EEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCCS CS
   M20_dimer   8 ggkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeilekeap 106
                 + +i+vkg++gH++ p++ ++A   ++++  +l++  +++    ++ +  ++v++i++G+a+n+i d++ +k+++R+l+++ +e+vl++i +i+ ++a+
  CTQ27695.1 187 TLHIEVKGVGGHGAVPEHTVDATLVACHITLALQSIVSRNI--TPFEPAVVTVGSIQAGHAPNIINDHVLMKLTVRTLNEQVRETVLQRIHDIAVAQAE 283
                 789***********************************988..999999*******************************************9977765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3015.19
//
Query:       CTQ27696.1  [L=463]
Description: Quinolone resistance protein NorB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-41  140.7  65.1    3.7e-27   95.2  34.3    2.4  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2  34.3   2.1e-31   3.7e-27       7     211 ..      23     234 ..      17     254 .. 0.75
   2 !   50.7  22.6   6.8e-18   1.2e-13       7     175 ..     281     460 ..     271     463 .] 0.85

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 2.1e-31
       MFS_1   7 lsalarsi....lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgag 100
                 ls l++++    ++ ++p a++++l is  ++ l+++l al+++ +++  G l+d+fGr r+  lgl l+++g+++l++a++ + l+l++rvlqGl a+
  CTQ27696.1  23 LSVLTFWLfaqsVINVVP-AMKSSLDISLETLTLAVSLSALFSGCFVVASGGLADKFGRMRMTTLGLGLSIVGSAMLVVAQG-PgLFLAGRVLQGLSAA 119
                 333333333332566666.******************************************************777775455.55************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpa 199
                 +++pa +ali  w+ ++ r ra++++ +g+  G+ l   +gg++a+ lgWr++f++  +v+lla+    ll  +++++++  s+ ++    ++  l+  
  CTQ27696.1 120 CIMPATLALIKTWYEGRARQRAVSFWVIGSWGGSGLCSFVGGAIATGLGWRWIFVFSIAVALLALF---LLRGTPESRSASASQHKLD---VGGLLSL- 211
                 ****************************************************************55...6666666666666666662...2222222. PP

       MFS_1 200 wkallkdpvl......w.....i 211
                 + al+  + +      w     +
  CTQ27696.1 212 IVALVLVNLFiskghgWgwsspL 234
                 22222222222444444224331 PP

  == domain 2  score: 50.7 bits;  conditional E-value: 6.8e-18
       MFS_1   7 lsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fa..sslw.lllvlrvlqGlgag 100
                 l   a+++ +++++++l++ ++++p e g+++ +y ++ ++++ ++  l +r+G+r  +++g +l+a++++l++  f   + +  +++++ vl Glg g
  CTQ27696.1 281 LLNGAIGT-MMIASIWLQQGHHLTPLESGMMTLGYLVTVLAMIRVGEKLLQRYGARLPMMAGPVLTAIAIALISctFLekALYIgVVFASNVLFGLGLG 378
                 33333333.44444499****************************************************444444764554455589************ PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpee 175
                 ++++ +   +++ +p+++ g a g++ +g+slG ++g ++ + l +++         +++ +++a+++l a+ + +lllp+ 
  CTQ27696.1 379 CYATPSTDTAVANAPENKIGVASGIYKMGSSLGGAMGIAVTASLFALFLplgmahaAQYALWFNAVLCLGAMAVSALLLPRA 460
                 *************************************888887776777799*******************99888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 3608.44
//
Query:       CTQ27697.1  [L=324]
Description: DNA-binding transcriptional activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-62  208.7   0.0    6.6e-62  208.1   0.0    1.2  1  Sigma54_activat  Sigma-54 interaction domain
    8.3e-21   74.5   0.0    3.7e-20   72.4   0.0    2.0  2  Sigma54_activ_2  Sigma-54 interaction domain
    1.8e-07   30.8   2.2    1.1e-06   28.3   2.8    2.0  2  HTH_8            Bacterial regulatory protein, Fis family
    8.8e-07   29.0   0.0    1.4e-06   28.3   0.0    1.4  1  AAA_5            AAA domain (dynein-related subfamily)
    1.2e-06   28.0   0.0     0.0014   18.0   0.0    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0023   18.4   0.0     0.0045   17.4   0.0    1.5  1  AAA              ATPase family associated with various cellul
     0.0033   17.5   0.0     0.0065   16.6   0.0    1.4  1  AAA_2            AAA domain (Cdc48 subfamily)
  ------ inclusion threshold ------
      0.034   14.0   0.1        0.5   10.2   0.1    2.4  2  HTH_23           Homeodomain-like domain
      0.034   14.5   0.2       0.07   13.5   0.0    1.8  2  AAA_16           AAA ATPase domain
       0.16   11.5   0.0       0.26   10.8   0.0    1.3  1  AAA_7            P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.1   0.0   3.7e-65   6.6e-62       2     163 ..       9     170 ..       8     175 .. 0.98

  Alignments for each domain:
  == domain 1  score: 208.1 bits;  conditional E-value: 3.7e-65
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTS CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgG 95 
                      +ge +++ e+leq++++a+ d +vl+ Ge GtGKel+a+ +h  s+r ++pf+++ncaa++++ll+seLFGhe+GaFtGA+k++ G+fe+adgG
       CTQ27697.1   9 LGEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNDNLLDSELFGHEAGAFTGASKRHPGRFERADGG 102
                      6889999*************************************************************************************** PP

                      EEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHT CS
  Sigma54_activat  96 tlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrln 163
                      tlfLDe+++ p+ +QekLlrv++ ge+ervG+s++ +v+vr+++atn dl ++veeg+fr+dL+ rl+
       CTQ27697.1 103 TLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPQMVEEGHFRADLLDRLA 170
                      ******************************************************************96 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   2.1e-23   3.7e-20       2     138 .]      10     179 ..       9     179 .. 0.87
   2 ?   -3.5   0.1       5.9   1.1e+04      61      68 ..     290     297 ..     277     308 .. 0.51

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 2.1e-23
                      ---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.......................HHHHHHTTTSE CS
  Sigma54_activ_2   2 gasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.......................ldlleqakggt 72 
                      g+++   e  e++  +a    pv+++Ge G+gkel+A+ Lh  s++w+ +f+  ++a+l+                          +e+a+ggt
       CTQ27697.1  10 GEANSFLEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSSRWQGPFISLNCAALNdnlldselfgheagaftgaskrhPGRFERADGGT 103
                      66666777788899999999*************************************999555555566666666655555544455559**** PP

                      EEEEE-TT--HHHHHHHHHHHHH...........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  73 LylkdiadlskaeqkeLlellak...........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      L+l ++a  +   q +Ll +++              + ++rlV+++ +dl+q++e+g+f + Ll +L   ++++PpL
       CTQ27697.1 104 LFLDELATAPMLVQEKLLRVIEYgelervggsqpL-QVNVRLVCATNADLPQMVEEGHFRADLLDRLAFDVVQLPPL 179
                      **********************999*****98543.89**************************************8 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.9
                      HHHHHHHT CS
  Sigma54_activ_2  61 pldlleqa 68 
                       +++leqa
       CTQ27697.1 290 LQRSLEQA 297
                      22222222 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.7   4.9e+03      23      30 ..     196     203 ..     196     204 .. 0.86
   2 !   28.3   2.8   6.2e-10   1.1e-06       5      41 ..     285     321 ..     283     322 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.7
                 HHHHHHTS CS
       HTH_8  23 kAArlLGi 30 
                 +++r+LG+
  CTQ27697.1 196 QMCRELGL 203
                 689****8 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 6.2e-10
                 HHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHH CS
       HTH_8   5 vEkelIeaALertgGnkskAArlLGisRrtLyrKLkk 41 
                  Ek+l++  Le++++++++AA+lLG++  +L+  Lkk
  CTQ27697.1 285 QEKRLLQRSLEQAKYHQKQAAELLGLTYHQLRALLKK 321
                 6******************************988887 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   8.1e-10   1.4e-06       1     121 [.      31     149 ..      31     169 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 8.1e-10
                 EEEEE--SSSSHHHHHHHGGGGB......S--EEEEE--TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal......nreveyvqltrdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleer 92 
                 +vl++G+ GtgK  +a rl  +         +++  +l++++  ++l+g+   +  g  +++++ + ra   g +l+lDE+ +a+  v+++Ll+++e  
  CTQ27697.1  31 PVLVIGERGTGKELIANRLHYLSsrwqgpFISLNCAALNDNLLDSELFGHEAGAfTGASKRHPGRFERA--DGGTLFLDELATAPMLVQEKLLRVIEYG 127
                 599****************99999775444467778889999999999999877999999999999976..89************************** PP

                 EEE..-SSSEEE---......-EEEEEES CS
       AAA_5  93 rllleeggelvkaknddllerfrviatan 121
                 +l    g +  +++       +r++ ++n
  CTQ27697.1 128 ELERVGGSQPLQVN-------VRLVCATN 149
                 ***88888888775.......56666666 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0012       2.1      25      45 ..      32      52 ..      27      59 .. 0.89
   2 !   18.0   0.0   7.8e-07    0.0014      92     158 ..      86     150 ..      79     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
  Mg_chelatase 25 lllvGppGsGKtmlakrlpsl 45
                  +l++G  G+GK ++a+rl+ l
    CTQ27697.1 32 VLVIGERGTGKELIANRLHYL 52
                  799***************987 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 7.8e-07
  Mg_chelatase  92 GggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNp 158
                    g sk +pG   +a  G LfLDEl+     v e L + +e ge+  +r   +     ++ lv+a+N 
    CTQ27697.1  86 TGASKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATNA 150
                   5778999***********************************85..799999999999999999995 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.5e-06    0.0045       1     125 [.      32     167 ..      32     171 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.5e-06
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk............yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeer 84 
                 vl++G  GtGK l+a+ +   +   + +f++++++ l ++             +  ++k+  + f++a    +   lf+DE+                 
  CTQ27697.1  32 VLVIGERGTGKELIANRLHYLSsrwQGPFISLNCAALNDNlldselfgheagAFTGASKRHPGRFERA----DGGTLFLDELATAPML----------- 115
                 799************9887664222799********99777888855554443333333344444444....3478*****9877444........... PP

                 HHHHHHHHHHHTTTS........SSTEEEEEEESS..GGGSTHHHHS.TTSS CS
         AAA  85 vvnqLlteldgvkkk........eskvivigatnr..pdkldpallr.gRfd 125
                 v+++Ll++++  + +        + +v +++atn   p+++++   r + +d
  CTQ27697.1 116 VQEKLLRVIEYGELErvggsqplQVNVRLVCATNAdlPQMVEEGHFRaDLLD 167
                 5999***9999999999999999888********988888888777666555 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.6e-06    0.0065       6     136 ..      32     157 ..      30     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.6e-06
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHH...TTT-HHHHTTSEEEEETGGG-------------HHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrliga...ppgyvgaeegGivllDEidKihpkessgadvSregVqr 97 
                 +l++g+ g+Gk+++a+ l  l + + + ++i +++ +l      +e   h    ++ga   +pg  ++++gG ++lDE+  +              Vq+
  CTQ27697.1  32 VLVIGERGTGKELIANRLHYLSS-RWQGPFISLNCAALNDnlldSELFGHEAGAFTGAskrHPGRFERADGGTLFLDELATAPM-----------LVQE 118
                 57899999999999999999999.8999999999999888777766666666665554222789999***************99...........**** PP

                 HHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHT CS
       AAA_2  98 dLLqileggtltdkqgrkvdtknilfImtgafgsskisd 136
                  LL+++e g+l+   g++    n+ ++++++ +  +  +
  CTQ27697.1 119 KLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPQMVE 157
                 **************9988888889999999987766555 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.32   5.7e+02      10      28 ..     194     219 ..     190     220 .. 0.89
   2 ?   10.2   0.1   0.00028       0.5      13      40 ..     292     321 ..     284     323 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.32
      HTH_23  10 illllae.......GlsvreIAreLg 28 
                 ++++++e       G s r+ A++Lg
  CTQ27697.1 194 AIQMCRElglplfpGFSERATATLLG 219
                 79999999999999999999999998 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00028
      HTH_23  13 llae..GlsvreIAreLgvsrrTvyrwlkr 40 
                   +e  ++ ++++A++Lg ++++++  lk+
  CTQ27697.1 292 RSLEqaKYHQKQAAELLGLTYHQLRALLKK 321
                 444458999***************999887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.9e-05      0.07      13      63 ..      16      68 ..      10     203 .. 0.80
   2 ?   -2.7   0.0       3.7   6.6e+03     100     103 ..     289     292 ..     241     321 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.9e-05
      AAA_16 13 lsalervrsgrp..elvllsGesGvGKsslvrellralekd.ggiflrgkcdql 63
                l++le+v++  p    vl++Ge+G+GK  ++++l+ +l+ +  g f++ +c  l
  CTQ27697.1 16 LEVLEQVSRLAPldKPVLVIGERGTGKELIANRLH-YLSSRwQGPFISLNCAAL 68
                6778888888899999*****************99.555552566666666655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.7
      AAA_16 100 klee 103
                  l++
  CTQ27697.1 289 LLQR 292
                 2222 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.26      28      54 ..      24      50 ..      17      71 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
       AAA_7 28 lllknkkpvllvGptGtGKtviikdll 54
                 l   +kpvl++G+ GtGK +i+++l 
  CTQ27697.1 24 RLAPLDKPVLVIGERGTGKELIANRLH 50
                5666789*************9999843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2465.74
//
Query:       CTQ27698.1  [L=222]
Description: regulatory protein for phage-shock-protein operon [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-49  166.1  36.6      1e-48  165.9  36.6    1.0  1  PspA_IM30       PspA/IM30 family
  ------ inclusion threshold ------
       0.53   10.3  17.0       0.08   13.0   2.0    3.7  3  DUF1664         Protein of unknown function (DUF1664)
        2.3    8.0  14.1       0.13   12.2   1.1    2.3  2  rRNA_proc-arch  rRNA-processing arch domain


Domain annotation for each model (and alignments):
>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.9  36.6   1.7e-52     1e-48       1     218 [.       2     216 ..       2     219 .. 0.97

  Alignments for each domain:
  == domain 1  score: 165.9 bits;  conditional E-value: 1.7e-52
   PspA_IM30   1 gifkrllrllraniselldkaeDPekileqairdmqselakarqalaqviarqkqlerkleeqkeqakklekkAkaALtkgeeeLArealaeikslekq 99 
                 gif+r++++++ani++ll+kaeDP+k+++  i++m+++l+++r ++a+++a++kql r++e++ +q +++++kA++AL+k +e+LAr+al e+++l++ 
  CTQ27698.1   2 GIFSRFADIVNANINSLLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLSRRIEQAVAQQAEWQEKAELALRKEKEDLARAALIEKQKLTDL 100
                 79************************************************************************************************* PP

   PspA_IM30 100 aealetqlaqqrsaveqlrkqlealetkieelkakkellkarekaakaqeavqkslgklstesatdslerieeKieerearadaaaelaesaqdldakl 198
                 +++l+ +++ + ++ + ++k++ +le k++e++a +++l++r +aa+  ++v ++l++ +  +a++ +e +e++i+++ea+a+ +     ++q+ld+++
  CTQ27698.1 101 IAQLDHEVQLVDETLARMKKEIGELENKLSETRARQQALALRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHRFG--KQQTLDQQF 197
                 *********************************************************************************9987655..5999***** PP

   PspA_IM30 199 eaagiqkevseqvlarlkae 218
                 +++++++e+ ++ la+lka+
  CTQ27698.1 198 AELKADDEI-SEQLAALKAK 216
                 *********.9999999995 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.9      0.01        61      52      82 ..      45      75 ..      26      90 .. 0.70
   2 ?   13.0   2.0   1.3e-05      0.08      59     105 ..      92     138 ..      78     146 .. 0.86
   3 ?    2.3   0.5     0.027   1.6e+02      62     105 ..     169     212 ..     139     222 .] 0.52

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.01
     DUF1664 52 qvseslaatkrhLssridrvdkkldeqkeis 82
                + s+   a k++Ls+ri++  +++ e +e +
  CTQ27698.1 45 STSARALAEKKQLSRRIEQAVAQQAEWQEKA 75
                4455566789999999998887777766544 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.3e-05
     DUF1664  59 atkrhLssridrvdkkldeqkeiskeikeevtevredlseigedves 105
                   k++L++ i+++d++++ + e+ + +k+e+ e++++lse++   ++
  CTQ27698.1  92 IEKQKLTDLIAQLDHEVQLVDETLARMKKEIGELENKLSETRARQQA 138
                 5799***********************************99887665 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.027
     DUF1664  62 rhLssridrvdkkldeqkeiskei.keevtevredlseigedves 105
                 + +++rid+++++ ++    ++++ +++ +e++ d +ei+e++ +
  CTQ27698.1 169 ESFERRIDQMEAEAESHRFGKQQTlDQQFAELKAD-DEISEQLAA 212
                 45666777777766665544333314445555444.344444444 PP

>> rRNA_proc-arch  rRNA-processing arch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   6.1     0.063   3.8e+02     157     238 ..      42     134 ..      10     160 .. 0.54
   2 ?   12.2   1.1   2.1e-05      0.13     218     269 ..     167     218 ..     155     219 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.063
                     EEEEEEGGGEEEEEEEEE---SS.TTST..THHHHHH..HHHHHHHH.......HSS---B--TTTTS-....---HHHHHHHHHHHHHHHHHHT CS
  rRNA_proc-arch 157 evvpvplkcieaiSsvrlklpkd.lrks..eareeva..kavqelkr.......rfpgiplldpikdmk....ikdeefkkllkkiealesrlak 235
                     ev++ + + +++  ++  ++++   +++  ++++e+a  k  + l r       +     l d i +++    + de++  + k+i +le++l++
      CTQ27698.1  42 EVRSTSARALAEKKQLSRRIEQAvAQQAewQEKAELAlrKEKEDLARaaliekqK-----LTDLIAQLDhevqLVDETLARMKKEIGELENKLSE 131
                     5555555555555555555555532222122222222312222244444444322.....44444444433338899999999999999999887 PP

                     SGG CS
  rRNA_proc-arch 236 npl 238
                      + 
      CTQ27698.1 132 TRA 134
                     544 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.1e-05
                     HHHHHHHHHHHHHHHHHTSGG.GSSSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  rRNA_proc-arch 218 efkkllkkiealesrlaknpllhspnleelyalyekkvalqeeikelkkeis 269
                     +f++  ++i+++e++ +++++ + + l++++a+++   ++ e++ +lk++++
      CTQ27698.1 167 RFESFERRIDQMEAEAESHRFGKQQTLDQQFAELKADDEISEQLAALKAKMN 218
                     6888889*************977899**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2282  (0.12728); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 1581.42
//
Query:       CTQ27699.1  [L=74]
Description: DNA-binding transcriptional regulator of psp operon [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-31  105.6   0.3    1.1e-30  105.5   0.3    1.0  1  PspB      Phage shock protein B
  ------ inclusion threshold ------
      0.068   13.3   2.1       0.09   13.0   0.0    1.9  2  P22_AR_C  P22AR C-terminal domain
        0.4   11.1   5.0       0.52   10.7   5.0    1.4  1  BatA      Aerotolerance regulator N-terminal


Domain annotation for each model (and alignments):
>> PspB  Phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.3   1.8e-34   1.1e-30       2      73 .]       3      73 ..       2      73 .. 0.96

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 1.8e-34
        PspB  2 evflavpliifvlfVapiWLiLHYrskkkrskglsaedekrLeellekAekleeRietLEriLdaespnwRn 73
                + fla+pl++fvlfV+p+WL+LHY+++  ++ +l++++++rL +l+++A++++eRi++LE+iLdae+pnwR+
  CTQ27699.1  3 MLFLAIPLTLFVLFVLPVWLWLHYNNR-GANGSLTQNEQQRLLQLTDDAKRMRERIQALEAILDAEHPNWRD 73
                689**********************99.67889**************************************5 PP

>> P22_AR_C  P22AR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.5      0.16   9.7e+02      16      24 ..      20      28 ..      18      32 .. 0.82
   2 ?   13.0   0.0   1.5e-05      0.09       6      38 ..      34      66 ..      29      71 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.16
    P22_AR_C 16 vWlWfalvr 24
                vWlW   ++
  CTQ27699.1 20 VWLWLHYNN 28
                8***87765 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.5e-05
    P22_AR_C  6 elTekElqsLvWlWfalvrsvellrelepaLra 38
                 lT++E q+L  l ++++r+ e ++ le +L+a
  CTQ27699.1 34 SLTQNEQQRLLQLTDDAKRMRERIQALEAILDA 66
                69*****************************97 PP

>> BatA  Aerotolerance regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   5.0   8.8e-05      0.52       4      29 ..       6      31 ..       1      64 [. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.8e-05
        BatA  4 FlnPllLlallllplpiillyllkrr 29
                ++ Pl+L++l++lp+ ++l+y ++  
  CTQ27699.1  6 LAIPLTLFVLFVLPVWLWLHYNNRGA 31
                457************99999977755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1264  (0.0705003); expected 358.6 (0.02)
Passed bias filter:                      859  (0.0479112); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 525.75
//
Query:       CTQ27700.1  [L=119]
Description: DNA-binding transcriptional activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-14   53.1   1.4    3.1e-14   52.5   1.4    1.2  1  PspC      PspC domain
  ------ inclusion threshold ------
       0.44   10.5   5.0       0.67   10.0   5.0    1.3  1  FixQ      Cbb3-type cytochrome oxidase component FixQ


Domain annotation for each model (and alignments):
>> PspC  PspC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   1.4   3.4e-18   3.1e-14       1      50 [.       8      64 ..       8      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 3.4e-18
        PspC  1 krLyRspdnkvlgGVcaGlAeyfgvdptlvRlifvlll.......glllYiilwiil 50
                k+L R p++ ++ GVcaG+A++++v + lvRli vl++       +l++Yiil ++l
  CTQ27700.1  8 KKLWRIPQRGMVKGVCAGIAQHLDVPVKLVRLITVLAMifglfffVLVAYIILTFAL 64
                89*******************************9999999887777778****9987 PP

>> FixQ  Cbb3-type cytochrome oxidase component FixQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.0   7.5e-05      0.67       6      32 ..      40      66 ..      37      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 7.5e-05
        FixQ  6 lrgfadswgllflvllfygvviyafrp 32
                +  +a ++gl+f+vl+ y+++ +a+ p
  CTQ27700.1 40 ITVLAMIFGLFFFVLVAYIILTFALDP 66
                6678999**************999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       993  (0.0553851); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 884.91
//
Query:       CTQ27701.1  [L=72]
Description: peripheral inner membrane phage-shock protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-35  120.9   5.2    1.9e-35  120.7   5.2    1.0  1  Phageshock_PspD  Phage shock protein PspD (Phageshock_PspD)


Domain annotation for each model (and alignments):
>> Phageshock_PspD  Phage shock protein PspD (Phageshock_PspD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   5.2     1e-39   1.9e-35       1      61 []      11      71 ..      11      71 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 1e-39
  Phageshock_PspD  1 kvkpglkiaGklvlltAlrYgPaGvAGWAvksvArrPLkllLAvALEPlLrrvakrvsarf 61
                     +vkpglki+Gkl+lltAlrYgPaGvAGWAvksvArrPLk+lLAvALEPlL+r+a+rv++++
       CTQ27701.1 11 QVKPGLKIVGKLALLTALRYGPAGVAGWAVKSVARRPLKMLLAVALEPLLSRLANRVTRGM 71
                     69********************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 567.20
//
Query:       CTQ27702.1  [L=465]
Description: conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     1e-185  617.9   0.0   1.1e-185  617.8   0.0    1.0  1  DUF463          YcjX-like family, DUF463
  ------ inclusion threshold ------
       0.15   11.0   0.0       0.24   10.4   0.0    1.2  1  Chlorophyllase  Chlorophyllase
       0.19   12.0   0.1        4.2    7.6   0.0    2.7  3  AAA_22          AAA domain


Domain annotation for each model (and alignments):
>> DUF463  YcjX-like family, DUF463
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  617.8   0.0  1.9e-189  1.1e-185       1     444 []      20     464 ..      20     464 .. 0.99

  Alignments for each domain:
  == domain 1  score: 617.8 bits;  conditional E-value: 1.9e-189
      DUF463   1 lrlavTGLsraGKtvfitsLvnqLlaaekkarlplfeaaregrllgaklepqpddsvprFdYeealaaLtaeppeWpesTreiselrLeiryksksglr 99 
                 lrlavTGLsr+GKt+fit+LvnqLl+++++arlpl++aare+rllg+k++pq+d  +prF+Y+e la+L ++pp Wp++Tr++se+rL++ry+s+++l 
  CTQ27702.1  20 LRLAVTGLSRSGKTAFITALVNQLLNIHTGARLPLLSAAREERLLGVKRVPQRDFGIPRFTYDEGLAQLYGQPPMWPTPTRGVSEIRLALRYRSNDSLL 118
                 7************************************************************************************************** PP

      DUF463 100 rllkeeatltldivDYPGEWLlDLpLleqdyaqwsqevlellkeearaelaaewlaalkeldpsakadeetleelaeaytayLaacreeeglsllqPGR 198
                 r++k+++tl+l+ivDYPGEWLlDLp+l+qdy +ws++++ ll++ +rae++a+w + ++ ldp a+ade+ l+++a+a+t+yL+ac++e gl+++qPGR
  CTQ27702.1 119 RHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMTGLLQG-QRAEWSARWRQLCAGLDPLAPADEARLADIAAAWTDYLHACKRE-GLHFIQPGR 215
                 *******************************************9.999*****************************************.********* PP

      DUF463 199 fllpgdlegaPvLtFfPllaleeaeks.....kkgsllavlerryeaYkkkvvkpffrehFarldrqivLvDvLsalnaGkealedleealaeileafr 292
                 f+lpg+++gaP+L+FfP+++ ++  ++     +k+s++ +l++ry++Y+++vvk f++ehF r+drqivLvD+L++ln+G++a++d++ al++++++f+
  CTQ27702.1 216 FVLPGEMAGAPALQFFPWPDVDAVGEAklaqaDKHSNAGMLRERYKYYCERVVKGFYKEHFLRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFH 314
                 *******************99887776788899****************************************************************** PP

      DUF463 293 ygkssllkrlfspridkvlfaAtkaDhvtaeqhkrLeallrqlveeaveraefegaevevlalaavrateeaeveeegeeleavrgteleekeevalfp 391
                 yg+++l++rlfsp idk+lfaAtkaDhvt +qh+++++ll+ql+++a+++a+feg+++++l la+++at+++ +e +ge+++a+rg++l+++++++++p
  CTQ27702.1 315 YGQRTLFRRLFSPVIDKLLFAATKADHVTIDQHSNMVSLLQQLIQDAWQNAAFEGISMDCLGLASIQATQSGLIEVNGEKIPALRGNRLSDGQPLTIYP 413
                 *************************************************************************************************** PP

      DUF463 392 GelPeklpeaefwkeqkfefvrfrPpkkeegeeealphirlDralefLlgDkL 444
                 Ge+P++lp ++fw++q+f+f++frP+   ++ +++lphirlD+alefL+gDkL
  CTQ27702.1 414 GEVPARLPGQAFWQQQGFQFENFRPQ--VMDVDRPLPHIRLDAALEFLIGDKL 464
                 **************************..47999******************98 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0     4e-05      0.24     105     141 ..       6      41 ..       1      54 [. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4e-05
  Chlorophyllase 105 eglkavlptsveanlsklalvGhsrGGktafalalgy 141
                     ++l+a ++ +v+  l +la++G sr Gktaf  al  
      CTQ27702.1   6 TELNALVNRGVDRHL-RLAVTGLSRSGKTAFITALVN 41 
                     556666666666665.58**************99954 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00071       4.2       8      30 ..      22      44 ..      16      68 .. 0.85
   2 ?    0.7   0.0     0.099   5.9e+02      52      91 ..     166     205 ..     145     212 .. 0.86
   3 ?   -1.9   0.0      0.63   3.8e+03      91     114 ..     277     304 ..     248     325 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00071
      AAA_22  8 lvvtGesGtGKTtllrrlleqld 30
                l+vtG s +GKT  +  l++ql 
  CTQ27702.1 22 LAVTGLSRSGKTAFITALVNQLL 44
                79*******************95 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.099
      AAA_22  52 sskdllrellralglelkaerlsseellealeqalrarav 91 
                 +++  +r+l+  l+  + a ++++ ++ +a +++l+a+++
  CTQ27702.1 166 EWSARWRQLCAGLDPLAPADEARLADIAAAWTDYLHACKR 205
                 7889999*******988889999*************9988 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.63
      AAA_22  91 v...ielliiDEaqhlr.seealeeLrs 114
                     ++++++D  q l+  ++a+++ r 
  CTQ27702.1 277 LrfdRQIVLVDCLQPLNsGPQAFNDMRL 304
                 1344578888888888744777777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3571.95
//
Query:       CTQ27703.1  [L=353]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-54  181.5   2.5    1.3e-53  181.1   0.4    2.0  2  DUF697    Domain of unknown function (DUF697)
  ------ inclusion threshold ------
      0.019   14.6   0.2      0.037   13.7   0.1    1.5  1  EcsC      EcsC protein family
          2    8.2   8.1        0.5   10.2   1.9    2.7  3  GspL_C    GspL periplasmic domain


Domain annotation for each model (and alignments):
>> DUF697  Domain of unknown function (DUF697)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.11   6.7e+02      80     124 ..      65     111 ..      57     148 .. 0.59
   2 !  181.1   0.4   2.1e-57   1.3e-53       3     161 ..     184     341 ..     182     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.11
      DUF697  80 svlknlaglGlvelgtdllkqllsl..nlatklsaraaQGvvagllT 124
                 s+ + ++++Gl  +g++++ q ++   n ++     a+ G vag+l 
  CTQ27703.1  65 SLWRRMVSAGLAIFGVSVVAQGVQWtaNAWQTQDWIALGGCVAGALI 111
                 45555556666555555555544442222222222233444444443 PP

  == domain 2  score: 181.1 bits;  conditional E-value: 2.1e-57
      DUF697   3 aaeleelaeqelleqrdqeakkliekyawekAlvvavsPlalvDllavaavnlrlirelaelYgielgyegaqrLarsvlknlaglGlvelgtdllkql 101
                 ++e+ +l++q+++  +d++a++ i+++a+e+ l++avsPlalvD++++a++nlrli+++a lYgielgy +++rL+r vl n+a++G++el+ ++++++
  CTQ27703.1 184 DREVVSLYAQLVQPVLDAQARREISRSAAESTLMIAVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFRLVLLNIAFAGASELVREVGMDW 282
                 78999********************************************************************************************** PP

      DUF697 102 lslnlatklsaraaQGvvagllTarvGlsaieylrplaswgdegkpklsevvkellsqlk 161
                 +s++la++lsaraaQG++agllTar+G++a+e++rpl+ w +++kp+l+++++el+ qlk
  CTQ27703.1 283 MSQDLAARLSARAAQGIGAGLLTARLGIKAMELCRPLP-WIADDKPRLGDFRRELIGQLK 341
                 **************************************.*****************9998 PP

>> EcsC  EcsC protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   6.3e-06     0.037     112     162 ..     223     276 ..     149     299 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.3e-06
        EcsC 112 lllaDiPlllglklkvlqeiAliYGydlkek.eerlfiLkvlqlasa.dde.er 162
                 l l+D+ ++   +l+++ +iA+ YG +l  + + rlf L +l++a+a  +e +r
  CTQ27703.1 223 LALVDMAFIAWRNLRLINRIATLYGIELGYYsRLRLFRLVLLNIAFAgASElVR 276
                 578999999999****************76625699******999995444444 PP

>> GspL_C  GspL periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.9   8.3e-05       0.5       5      39 ..      65      99 ..      62     101 .. 0.94
   2 ?   -0.2   0.0      0.13   7.7e+02     105     131 ..     137     163 ..     128     168 .. 0.90
   3 ?   -1.3   0.1      0.28   1.7e+03      60      74 ..     199     213 ..     170     230 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 8.3e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      GspL_C  5 saWrkvaillalallvvvaerllqlyqlerqaqal 39
                s Wr+++++ ++++ v+v+ +++q+   ++q+q++
  CTQ27703.1 65 SLWRRMVSAGLAIFGVSVVAQGVQWTANAWQTQDW 99
                56*******************************99 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.13
                 ETTTTCEEEEEEESSCHHHHHHHHHHH CS
      GspL_C 105 dgkrgelrlqleakdfaafeqlrakaa 131
                 d +r+ l+ ++ +k+ a  e+l+++a 
  CTQ27703.1 137 DEARDMLHSHAVGKAKAFCEKLAQQAG 163
                 6789999***************99985 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.28
                 XXXXXXXXXXXXXXX CS
      GspL_C  60 lraqmrkqlrrlagk 74 
                 l aq+r++++r+a+ 
  CTQ27703.1 199 LDAQARREISRSAAE 213
                 458888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2603.43
//
Query:       CTQ27704.1  [L=299]
Description: putative bacterial regulatory protein, LysR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-37  126.7   1.3      1e-36  126.3   1.3    1.2  1  LysR_substrate  LysR substrate binding domain
    2.1e-18   66.0   1.7    2.1e-18   66.0   1.7    1.7  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.013   15.1   0.0      0.023   14.3   0.0    1.4  1  HTH_24          Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3   1.3   1.7e-40     1e-36       2     209 .]      90     299 .]      89     299 .] 0.94

  Alignments for each domain:
  == domain 1  score: 126.3 bits;  conditional E-value: 1.7e-40
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                     + lrg+L+ig+ ptla+ +l+p+l+rf+a+ P++ l+ ++     + d  +e ++Dlai +g  + ++l  ++L+ e l++v+sp +   + +p+
      CTQ27704.1  90 QDLRGTLHIGIAPTLAHLWLMPRLPRFQAQWPGLNLQFRVRA--GVMD-FNEERVDLAIYYGATRYPDLYQQRLMAESLLPVCSPRY-RQQYRPL 180
                     689***************************************..****.77777*********************************.78899** PP

                     CGGGGCTSEEEEESTTST...HHHHHHHHHHCTTEEC...EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEE CS
  LysR_substrate  97 sledLadeplilleegsg...lrdlledalreaglkp...rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelyl 185
                     s  d a + +i+  e++       +++ +++++g+++    + + vn+ + +++++++GlG+ +  + ++++ l++grlval   e p p+ + l
      CTQ27704.1 181 SGGDPAALVWIHACESTDvqdQFAEWRLWCQHSGQALpfeGRYYAVNNHSLAIEMALNGLGVVMGRKTLIQPLLDAGRLVALSENEAPSPFGYNL 275
                     ************86666678888889999******99999899*************************************9999997777***** PP

                     EEETTCCCHHHHHHHHHHHHHHHC CS
  LysR_substrate 186 vyrkgrelspavrafidflreala 209
                     +++++ + +p++raf ++l++++a
      CTQ27704.1 276 ICPQENRSRPRFRAFSEWLAAECA 299
                     *******************99885 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   1.7   3.6e-22   2.1e-18       2      60 .]       9      67 ..       8      67 .. 0.97
   2 ?   -2.4   0.0      0.83     5e+03      29      42 ..      72      85 ..      71      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 3.6e-22
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                 +l++f+  a++ sft AA e++l+q avs++i+rLE ++g +Lf+R +r+l LTe+G+
  CTQ27704.1  9 ALLQTFEVTARHLSFTLAAHEMNLTQGAVSHRIRRLEMHIGFRLFIRMTRKLALTEEGK 67
                689******************************************************95 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.83
                HHHHHHHHHHHHHT CS
       HTH_1 29 avsrqikrLEeelg 42
                ++s+++++ ++e++
  CTQ27704.1 72 TLSHSLRAINDEIE 85
                79999*99999875 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.8e-06     0.023       8      42 ..       7      45 ..       4      46 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.8e-06
      HTH_24  8 ILelLqk...npr.isqreLAerlglSpstvnrrlkrLe 42
                IL lLq     +r +s +  A + +l++++v+ r++rLe
  CTQ27704.1  7 ILALLQTfevTARhLSFTLAAHEMNLTQGAVSHRIRRLE 45
                55555555556666999999******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2437.49
//
Query:       CTQ27705.1  [L=437]
Description: putative 6-phospho-beta-glucosidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-60  204.4   0.0    1.5e-60  203.9   0.0    1.2  1  Glyco_hydro_4   Family 4 glycosyl hydrolase
    9.5e-51  172.8   0.0    6.3e-50  170.1   0.0    2.0  2  Glyco_hydro_4C  Family 4 glycosyl hydrolase C-terminal domain
  ------ inclusion threshold ------
      0.096   12.8   0.0       0.16   12.1   0.0    1.2  1  Peptidase_M7    Streptomyces extracellular neutral proteinase


Domain annotation for each model (and alignments):
>> Glyco_hydro_4  Family 4 glycosyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.9   0.0   2.5e-64   1.5e-60       1     181 [.       5     184 ..       5     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 203.9 bits;  conditional E-value: 2.5e-64
                    EEEEETTTSSSHHHHHHHHHHTTTTCTEEEEEEE-SSH..HHHHHHHHHHHHHHHHCTTTCEEEEESSHHHHHTT-SEEEE---TTHHHHHHHHHH CS
  Glyco_hydro_4   1 kiviiGgGStifaklllgdlkkteelsvselaLvDide..erldaiqtlakklveeagadlkieattdrkealkdadfVitairvGlekareidek 94 
                    kiv+iGgGS+++++l++g+l++++e++v+ l+LvDi+e  e+ ++i+ la++++ +ag  +++ at+dr+ al+dadfV  ++r G ++ar  de+
     CTQ27705.1   5 KIVVIGGGSSYTPELIEGLLNRYHEMPVASLWLVDIEEgkEKVEIIAGLARRMIAKAGLTIEVVATLDRESALRDADFVCSQFRAGCLDARISDER 100
                    8************************************999******************************************************** PP

                    CCHTTTTT-CTTSSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHHHHHHHHH CS
  Glyco_hydro_4  95 iplryGieqtiqdtvgpggifrglrtipvlleIakdieelcPdawvlnytNPaavvteallrlvpnikavglChsvigvkeelakll 181
                    i+l+yG+ +  q+t+g gg +++ rtip+ leIa d+e lcPdaw+ln+tNP ++vtea+lr++  ikavglC++++ +++ ++ ll
     CTQ27705.1 101 ISLKYGLIG--QETNGLGGFANACRTIPIALEIAADMERLCPDAWLLNFTNPSGMVTEAILRHSR-IKAVGLCNVPVIMQKGITTLL 184
                    *********..**************************************************9988.***************999877 PP

>> Glyco_hydro_4C  Family 4 glycosyl hydrolase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.12   7.2e+02     171     200 ..      49      78 ..      41      80 .. 0.90
   2 !  170.1   0.0   1.1e-53   6.3e-50       1     208 []     196     411 ..     196     411 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.12
                     HHHHCHHHHHHHHHHHHHHHHHTBHHHHHH CS
  Glyco_hydro_4C 171 qlaallrtniaveeltveAalegdrelalq 200
                      +a+l r++ia   lt+e + + dre al+
      CTQ27705.1  49 IIAGLARRMIAKAGLTIEVVATLDRESALR 78 
                     6899*********************99975 PP

  == domain 2  score: 170.1 bits;  conditional E-value: 1.1e-53
                     EEEETTEEEEEEEECTTEEHHHHHHHHHHH...HHHHHHCTGGG.TSHHHHHHHHHHSSEEECGGHHCTTSS.HCHHHH..SHHHHHHH...HHH CS
  Glyco_hydro_4C   1 vaGlNHlaWllkledkGeDlypelrelvee...dewleeiaekk.aervridllrrlgllpteysrhyaEYvpylkrea..peliekek...tra 86 
                     vaGlNH+++++++ +kG++ +pe+ ++++    + + ++i   +       +ll+ lg++p++y+r+y     y+k++   +el e+     tr+
      CTQ27705.1 196 VAGLNHFIFVRQILHKGKEWLPEVIAEINAgrdPLVPRNIPPFRwP----SHLLQGLGMIPCAYLRYY-----YMKDDLlrQELAEA-GgegTRG 280
                     79************************99998874444556555453....47****************.....99987774444443.2578*** PP

                     HHHHHHHHTTTTTHHHHHHH.....SSCHTS-S....HHHHHHHHHHTS-EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB--CS-HHHH CS
  Glyco_hydro_4C  87 evvkevekelfeelekekle.....lekrsgey....avdiieaivtdkprrlvvnvpNnglIpnLpddavVEvpclvdkngirpvavgelpeql 172
                     evvk+ ek lf+++++++l+     le r+g+y    a+++++ai++dk+  ++vn++Nng+I++Lpdd++VEv+ l++++g+ p++v ++pe  
      CTQ27705.1 281 EVVKQLEKILFDQYRDPHLAvkpkaLEGRGGQYyseaACELMNAIYNDKRIIMHVNTRNNGAINGLPDDCAVEVSSLITASGPLPLNVAPFPEDT 375
                     ****************8888888899999**99************************************************************** PP

                     HHCHHHHHHHHHHHHHHHHHTBHHHHHHHHHCSTT- CS
  Glyco_hydro_4C 173 aallrtniaveeltveAalegdrelalqallldplv 208
                       ll+ ++++e+lt+eAal+g+r++a++al+l+pl+
      CTQ27705.1 376 LRLLQLMKSFERLTIEAALTGNRHTAWRALMLNPLI 411
                     **********************************96 PP

>> Peptidase_M7  Streptomyces extracellular neutral proteinase (M7) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.6e-05      0.16      79     123 ..     333     377 ..     307     382 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.6e-05
  Peptidase_M7  79 trvtahetghvlglpdtysgpcselmsgggpgpsctnaqpdaaer 123
                     v + + g + glpd  +  +s l++  gp p    ++p+ + r
    CTQ27705.1 333 MHVNTRNNGAINGLPDDCAVEVSSLITASGPLPLNVAPFPEDTLR 377
                   45778899******************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 3275.01
//
Query:       CTQ27706.1  [L=513]
Description: DNA-binding transcriptional dual regulator, tyrosine-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-52  178.3   0.0    1.5e-52  177.7   0.0    1.3  1  Sigma54_activat  Sigma-54 interaction domain
    6.4e-22   76.9   0.3    1.3e-21   75.9   0.3    1.6  1  HTH_50           Helix-turn-helix domain
    5.4e-17   62.2   0.0    1.2e-16   61.1   0.0    1.6  1  Sigma54_activ_2  Sigma-54 interaction domain
    5.7e-05   23.3   0.0    0.00015   22.0   0.0    1.8  1  PAS_4            PAS fold
    0.00016   22.1   0.0    0.00032   21.1   0.0    1.5  1  AAA              ATPase family associated with various cellul
    0.00051   20.0   0.0    0.00097   19.1   0.0    1.5  1  PAS              PAS fold
      0.001   18.5   0.0     0.0026   17.1   0.0    1.7  1  HTH_Tnp_ISL3     Helix-turn-helix domain of transposase famil
     0.0014   18.7   0.0     0.0061   16.6   0.0    2.0  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0024   17.8   0.0      0.008   16.2   0.0    1.9  1  PAS_8            PAS domain
     0.0046   16.7   0.0      0.014   15.2   0.1    1.9  2  ACT              ACT domain
     0.0069   16.6   0.0      0.015   15.5   0.0    1.6  1  PAS_9            PAS domain
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.021   15.0   0.0    1.3  1  AAA_2            AAA domain (Cdc48 subfamily)
      0.048   13.4   0.1       0.11   12.3   0.1    1.6  1  HTH_38           Helix-turn-helix domain
       0.05   13.0   0.1        4.8    6.5   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.073   13.4   0.0       0.12   12.6   0.0    1.4  1  NUMOD1           NUMOD1 domain


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7   0.0   1.3e-55   1.5e-52       5     167 ..     210     365 ..     206     366 .. 0.97

  Alignments for each domain:
  == domain 1  score: 177.7 bits;  conditional E-value: 1.3e-55
                      SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEE CS
  Sigma54_activat   5 sealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgGtlf 98 
                       +++++++eq++k+a  ++++li+G++GtGK+lla+a+h as+r+ kp++a+nc++ipe+ +eseLFG       +A + kkG fe+a+gG ++
       CTQ27706.1 210 GPKMRHVVEQARKLAMLSAPLLIVGDTGTGKDLLAHACHLASPRAGKPYLALNCGSIPEDAVESELFG-------DALQGKKGFFEQANGGSVL 296
                      5799***************************************************************9.......68999************** PP

                      EETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEE CS
  Sigma54_activat  99 LDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnviei 167
                      LDeige+++++Q+kLlr+l++g+++rvG+++e++vdvr+i+at+++l e v++g fredLyyrlnv+++
       CTQ27706.1 297 LDEIGEMSPRMQTKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLIELVQKGLFREDLYYRLNVLTL 365
                      ******************************************************************986 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.3   1.1e-24   1.3e-21       1      50 []     458     507 ..     458     507 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 1.1e-24
      HTH_50   1 egsLkeyveefErelikkayekYpStRklAkrLGvShtaianklrkYgIs 50 
                 egsL ++   fEr+++ ++y++YpStRklAkrLGvShtaianklr Yg+s
  CTQ27706.1 458 EGSLDDITRRFERSVLTQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLS 507
                 689*********************************************96 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   9.8e-20   1.2e-16       4     138 .]     210     370 ..     207     370 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 9.8e-20
                      -HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H................HHHHHHTTTSEEEEEE-TT- CS
  Sigma54_activ_2   4 saaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp................ldlleqakggtLylkdiadl 81 
                      ++++ +  e+  ++a  ++p++++G+ G+gk+l A + h  s +  ++    +++++p                + ++eqa+gg  +l +i ++
       CTQ27706.1 210 GPKMRHVVEQARKLAMLSAPLLIVGDTGTGKDLLAHACHLASPRAGKPYLALNCGSIPedaveselfgdalqgkKGFFEQANGGSVLLDEIGEM 303
                      67778888888899999********************9999999999999999**9998899999999999999999999************** PP

                      -HHHHHHHHHHHHH.........HT.TTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  82 skaeqkeLlellak.........ae.ksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      s+  q++Ll  l+           e + ++r+++++ k+l +l+++g f e L+++L  l+l +PpL
       CTQ27706.1 304 SPRMQTKLLRFLNDgtfrrvgedHEvHVDVRVICATQKNLIELVQKGLFREDLYYRLNVLTLYLPPL 370
                      *********************9966699**************************************8 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.3e-07   0.00015       3      62 ..      88     140 ..      86     187 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.3e-07
       PAS_4   3 slpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvleg 62 
                 ++p++++ ld+ grv+ aN+a++ lfg +++ l+++++a+l  +        +++r+le+
  CTQ27706.1  88 AMPEPVLSLDTKGRVELANPASCLLFGQSQAKLRNHPVAQLIAD-------FNVQRWLES 140
                 6899***********************************97554.......455555555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.7e-07   0.00032       1     116 [.     230     348 ..     230     360 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.7e-07
                 EEEESSTTSSHHHHHHHHHHH...HTHEEEEEETTTCSSS.....STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavake...lgvefleisgsellsk.....yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlt 91 
                 +l++G  GtGK lla+a       +g ++l +++ ++ ++     ++g++ +  +++f++a   +    +++DEi ++ ++            + +Ll+
  CTQ27706.1 230 LLIVGDTGTGKDLLAHACHLAsprAGKPYLALNCGSIPEDaveseLFGDALQGKKGFFEQANGGS----VLLDEIGEMSPRM-----------QTKLLR 313
                 689*************98777344589999999999986678888***************98777....9********9998...........999999 PP

                 HHHHTTTS........SSTEEEEEEESS..GGGST CS
         AAA  92 eldgvkkk........eskvivigatnr..pdkld 116
                 +l++ + +        + +v vi+at++  ++ ++
  CTQ27706.1 314 FLNDGTFRrvgedhevHVDVRVICATQKnlIELVQ 348
                 99999988999999997779*****9875555555 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   8.1e-07   0.00097       3      51 ..      82     130 ..      80     183 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.1e-07
                 HHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBS CS
         PAS   3 lraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldlih 51 
                 l+a+l ++p+p++ +D +gr+ ++N+a + l+G s+  + + ++  li 
  CTQ27706.1  82 LSALLVAMPEPVLSLDTKGRVELANPASCLLFGQSQAKLRNHPVAQLIA 130
                 5789999*****************************9999999988885 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.2e-06    0.0026      12      51 ..     464     504 ..     464     505 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.2e-06
  HTH_Tnp_ISL3  12 iTlrleayilellles.rsvkavArqlgvSwtTVwrildry 51 
                   iT+r+e+ +l++l +s  s +  A++lgvS t + + l++y
    CTQ27706.1 464 ITRRFERSVLTQLYRSyPSTRKLAKRLGVSHTAIANKLREY 504
                   7*********************************9999887 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.1e-06    0.0061       2     118 ..     230     337 ..     229     353 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.1e-06
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllle 97 
                 +l+vG++GtgK  la     a    +++++  ++ + ++e+ +  ++    g++   ++ + ++a +g  ++lDE+ ++++ ++ +Ll+ l++ +++  
  CTQ27706.1 230 LLIVGDTGTGKDLLAHACHLASpraGKPYLALNCGS-IPEDAVESELF---GDALQGKKGFFEQA-NGGSVLLDEIGEMSPRMQTKLLRFLNDGTFRRV 323
                 89*********9999766655586677777776654.55555555544...33444555566455.5666789***********************987 PP

                 -SSSEEE---......-EEEE CS
       AAA_5  98 eggelvkaknddllerfrvia 118
                   +++v+++       +rvi 
  CTQ27706.1 324 GEDHEVHVD-------VRVIC 337
                 777777775.......55554 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.7e-06     0.008       4      52 ..      83     132 ..      81     145 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.7e-06
       PAS_8   4 ralfesspdgiavvdlgdrivdvNqaalellGys.adlkgellgqllpvl 52 
                  al+ ++p++++ +d+ +r+  +N+a + l+G s a l+  ++ ql+ ++
  CTQ27706.1  83 SALLVAMPEPVLSLDTKGRVELANPASCLLFGQSqAKLRNHPVAQLIADF 132
                 678889*******995557*************666666666665555555 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.2e-05     0.014       2      54 ..       2      50 ..       1      63 [. 0.78
   2 ?   -2.8   0.0       4.9   5.8e+03      10      24 ..     396     410 ..     396     410 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
                EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHH CS
         ACT  2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeed 54
                +l+v+++Dr Gl  +++ +l  rgi ++ i + + ++    i+  + + + + 
  CTQ27706.1  2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIDIDPIGR----IYLNFAELEFAT 50
                589********************************77....444444444444 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.9
                 STTHHHHHHHHHHHT CS
         ACT  10 rPGlLarvfgaladr 24 
                 rP l a+++++l+++
  CTQ27706.1 396 RPKLSADLSTVLTRY 410
                 79999******9985 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.2e-05     0.015       1      79 [.      90     160 ..      90     184 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.2e-05
       PAS_9   1 pdgilidnpdgrilyaNeaalrllGyspeevlgksitdlf........vtdpeanerlraaleqgrkkerevevvlirkngetfwvl 79 
                 p+++l  +++gr++ aN+a + l+G+s + + ++++ +l+         +++                ++e   +++  ng+ ++ +
  CTQ27706.1  90 PEPVLSLDTKGRVELANPASCLLFGQSQAKLRNHPVAQLIadfnvqrwLESS----------------PQETHAEHVVVNGQNYLLE 160
                 57788788********************************444444443333................3444444444444444433 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.7e-05     0.021       6     119 ..     230     332 ..     227     349 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-05
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------TH.HHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeeveh.lvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqil 103
                 +l++g tg+Gk +la a       +  k+   +++ ++ e ++ve+ l    ++ ++g  ++++gG vllDEi   +p             q+ LL+ l
  CTQ27706.1 230 LLIVGDTGTGKDLLAHACHLASP-RAGKPYLALNCGSIPE-DAVESeLFGDALQGKKGFFEQANGGSVLLDEIGEMSP-----------RMQTKLLRFL 315
                 6899*************999999.99**************.666551566778889999*******************...........9********* PP

                 H--EE-...------EE-T CS
       AAA_2 104 eggtlt...dkqgrkvdtk 119
                  +gt +   +   ++v+ +
  CTQ27706.1 316 NDGTFRrvgED--HEVHVD 332
                 ***98843333..444443 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   8.9e-05      0.11       9      42 ..     469     502 ..     468     503 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.9e-05
      HTH_38   9 eReeIerllaeGlslreIArrLgrspsTIsRElk 42 
                 eR ++ +l+    s r+ A+rLg+s++ I++ l+
  CTQ27706.1 469 ERSVLTQLYRSYPSTRKLAKRLGVSHTAIANKLR 502
                 8999999999999****************99776 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.021        25      24      43 ..     229     248 ..     214     259 .. 0.83
   2 ?    6.5   0.0     0.004       4.8      88     141 ..     273     324 ..     265     345 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.021
  Mg_chelatase  24 nlllvGppGsGKtmlakrlp 43 
                    ll+vG  G+GK +la++ +
    CTQ27706.1 229 PLLIVGDTGTGKDLLAHACH 248
                   589*************9865 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.004
  Mg_chelatase  88 aalvGggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrak 141
                   + l G   + k+G    a+ G ++LDE+ e++ ++   L + l+dg+ +  r  
    CTQ27706.1 273 SELFGDALQGKKGFFEQANGGSVLLDEIGEMSPRMQTKLLRFLNDGTFR--RVG 324
                   568888889999***********************99998888888654..444 PP

>> NUMOD1  NUMOD1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0    0.0001      0.12      10      33 ..     474     497 ..     471     501 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0001
      NUMOD1  10 tktigkFsSireAakyLgishntI 33 
                 t ++++++S r++ak Lg+sh  I
  CTQ27706.1 474 TQLYRSYPSTRKLAKRLGVSHTAI 497
                 6679*****************766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 3934.38
//
Query:       CTQ27707.1  [L=350]
Description: putative membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-97  325.7  58.3    2.1e-96  322.6  45.7    2.0  2  AbrB      Transition state regulatory protein AbrB


Domain annotation for each model (and alignments):
>> AbrB  Transition state regulatory protein AbrB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   4.7   1.6e-07    0.0029     157     196 ..      10      49 ..       1      50 [. 0.85
   2 !  322.6  45.7  1.2e-100   2.1e-96       1     313 [.      33     343 ..      33     344 .. 0.97

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.6e-07
        AbrB 157 lalllalallgallgkrlrlPaaallgplllsaalqlagl 196
                 +++ll+l +l   l+ r++lPaa llgpl+++++l+l g+
  CTQ27707.1  10 WLILLLLSVLFSSLLLRIHLPAALLLGPLIAGLILSLRGV 49 
                 7899999999999999*******************98775 PP

  == domain 2  score: 322.6 bits;  conditional E-value: 1.2e-100
        AbrB   1 wllGpllaaivlalaagaplrlprrlrkagqavlGvliGssftpevlaqiaeewllllllvvltlllsllvglllarlsgldratallgslPGglsamv 99 
                 +llGpl+a+++l+l+ g++l++pr++  a+qa++G++i+ +++p+v+  + ++w l+l+++++tl++s l+g+ll r+s l++at+++gs+PGg+samv
  CTQ27707.1  33 LLLGPLIAGLILSLR-GVKLSIPRPCYLAAQAIVGCMIARAINPSVFGVLFNNWALVLAILLTTLAISGLTGWLLVRYSALPGATGAWGSSPGGASAMV 130
                 59************9.99********************************************************************************* PP

        AbrB 100 alaeealgadtrlValvqylRvllVvlliplvaallggadaaaaaasaaaaassslflalllalallgallgkrlrlPaaallgplllsaalqlagllt 198
                 ++a+e +gad+rlVal+qylRvl+Vv +++lv+++  g++a++ ++  ++ +s +l + ++l+l++++++lg rlr+P++a+l p+ll+a++q  g+l+
  CTQ27707.1 131 VMAQE-YGADVRLVALMQYLRVLFVVGAAALVVRYALGNEAQEMTQDIVWFPSLTLNFPFTLLLTAVACWLGMRLRIPSGAMLLPMLLGALAQGGGWLM 228
                 *****.8***********************************886666666666655****************************************** PP

        AbrB 199 ialPalllalaqlliGasiGlrftreslrellralpaallstlllialcallalllalltgidlltalLAtaPGGlaemaiiAlalgadvafVtalqll 297
                 ++lP++lla+a++++G+++Gl+f+++++  +l++lp++++s+l+li++cal+al+l++++++d++ta+LAt+PGGl+++aiiA+ ++ad++f++alq+l
  CTQ27707.1 229 LELPEWLLAMAYAVLGWTVGLQFNKAIFLLALKTLPQIIASILGLILMCALMALALTHILQMDFMTAYLATSPGGLDTVAIIAAGTRADMSFIMALQTL 327
                 *************************************************************************************************** PP

        AbrB 298 Rlllvlllapllarll 313
                 Rl+++ll++p +ar +
  CTQ27707.1 328 RLFTILLTGPAMARAI 343
                 *************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2750.08
//
Query:       CTQ27708.1  [L=168]
Description: lipid hydroperoxide peroxidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-31  107.8   0.1    4.5e-31  107.5   0.1    1.0  1  Redoxin   Redoxin
    6.6e-15   55.1   0.0      8e-15   54.8   0.0    1.1  1  AhpC-TSA  AhpC/TSA family


Domain annotation for each model (and alignments):
>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.1   5.1e-35   4.5e-31       1     147 []      20     163 ..      20     163 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 5.1e-35
                 -TTSBB---ECCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHH.HHHHHHHTT-TSEEEE-..TTSH CS
     Redoxin   1 kagdkaPdftlplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndaf.vkefwgkeglkfpvlsD..gsaa 96 
                 +ag+ka+ ftl  +a+d ++v ls+++gk++v+n++p++++++C a++   +k+++l++e +++vv +++++ +f +++f+g+egl+++v+++  ++a+
  CTQ27708.1  20 QAGAKAQPFTL--VAKDLSDVALSQYAGKRKVLNIFPSIDTGVCAASV---RKFNQLAAELDNTVVLCISADLPFaQSRFCGAEGLSNVVTLStlRGAS 113
                 699*******8..88*******************************99...***************************************999999*** PP

                 HHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCHTSTTSHHHHH CS
     Redoxin  97 ftkalGlrleedaseglrtpryavidedgkvvylevepepeteesnaeavl 147
                 f +++G++++    +gl++++++vide+++vvy ++++e + ee++++a+l
  CTQ27708.1 114 FLADYGVAIATGPLAGLAARAVVVIDENDQVVYSQLVNEIT-EEPDYDAAL 163
                 ****************************************6.5****9987 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0     9e-19     8e-15       2     123 ..      22     146 ..      21     147 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 9e-19
                 TSB----EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H..SSEEEE-.TTSHHHHHT CS
    AhpC-TSA   2 gdkapdfelknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes.lnfpllsD.eegkvakay 98 
                 g ka+ f+l  +d  +v ls+y+gk  vl+++p+ ++ vC + ++++++l+ e++  +  v+ +s+d p+++ +f+ +e+  n+  ls  +   +  +y
  CTQ27708.1  22 GAKAQPFTLVAKDLSDVALSQYAGKRKVLNIFPSIDTGVCAASVRKFNQLAAELD--NTVVLCISADLPFAQSRFCGAEGlSNVVTLSTlRGASFLADY 118
                 899****************************************************..99*********************54566666667788999** PP

                 T-EETT...TTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  99 gvlkee...kglalratfvidkegkiry 123
                 gv       +gla ra++vid++  ++y
  CTQ27708.1 119 GVAIATgplAGLAARAVVVIDENDQVVY 146
                 ***9999****************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1304.21
//
Query:       CTQ27709.1  [L=321]
Description: L-Ala-D/L-Glu epimerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-27   93.8   0.5    1.8e-26   92.7   0.0    1.8  2  MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N
    1.2e-25   90.4   1.4    1.5e-25   90.0   0.4    1.6  2  MR_MLE_C  Enolase C-terminal domain-like


Domain annotation for each model (and alignments):
>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.0     2e-30   1.8e-26       2     117 .]       2     112 ..       1     112 [. 0.98
   2 ?   -2.0   0.2      0.45   4.1e+03      91     112 ..     133     152 ..     118     157 .. 0.62

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 2e-30
                 EEEEEEEEEEEEC.EEEETTEEEEEEEEEEEEEEECTTEEEEEEEE-STTGHHHHHHHHHHHHHHHHTTSBTTHHHHHHHHHHHHCSSCHHHHHHHHHH CS
    MR_MLE_N   2 ievvvveeavklr.PvqlavttvqkqslvlvkietseGvvGigeatsvggraetikaelddhlapllvgkdaanisdlaqllkravlgnmsAkaaidmA 99 
                 ++v+v eea++l+ P+++a+++++++++v+v++e ++Gv+G+ge+t+++     ++ e+ ++++++++    + + +l+++  +  l++ +A++aid+A
  CTQ27709.1   2 RNVRVYEEAWPLHtPFVIARGSRSEAKVVVVELE-EDGVKGVGECTPYP-----RYGESIASVMAQVMAIGEQLEAGLTREQLQRLLPAGAARNAIDCA 94 
                 6899******************************.**************.....99999999************************************* PP

                 HHHHHHHHTTSBHHHHTT CS
    MR_MLE_N 100 lwDlkakalnlpladLlG 117
                 lwDl+a++ +  la+LlG
  CTQ27709.1  95 LWDLQARREGKTLAQLLG 112
                 *****************9 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHHHHHTTSBH CS
    MR_MLE_N  91 sAkaaidmAlwDlkakalnlpl 112
                 +A+     Alw + a+ l++ l
  CTQ27709.1 133 MAA--SAAALWQAGAQLLKVKL 152
                 333..33588888887776655 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.17   1.5e+03      86     122 ..      51      87 ..      20      94 .. 0.62
   2 !   90.0   0.4   1.7e-29   1.5e-25       2     204 ..     133     319 ..     132     321 .] 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHSSEEEESTTSS...SHHHHHHHHHHTSE CS
    MR_MLE_C  86 dleglaelrarasipiaagEsly...sradfrelleagav 122
                   e++a + a+     a gE+l    +r+++++ll aga+
  CTQ27709.1  51 YGESIASVMAQ---VMAIGEQLEaglTREQLQRLLPAGAA 87 
                 45555555533...46667776533369999999999987 PP

  == domain 2  score: 90.0 bits;  conditional E-value: 1.7e-29
                 HHHHHHHHHHHHT-SEEEEETSSSHHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESSSSTTTHHHHHHHHHHHHSSE CS
    MR_MLE_C   2 laeearelvaeqgfravKlkvggddvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEPvppeddleglaelrarasip 100
                 +a++a++l+++ g + +K+k+ +   +   er+ a+r+a+ p+  ++l+vDan++w+ +    +++ l++l++++lE+P+p+ dd  +l       ++p
  CTQ27709.1 133 MAASAAALWQA-GAQLLKVKLDD---RLISERLIAIRQAA-PE--ATLIVDANESWHSEGLAARCQLLADLGVAMLEQPLPA-DDDSALENFV-H-PLP 221
                 78889888886.********665...68889********9.74..5************************************.6688899999.5.89* PP

                 EEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCS.SHHHHHHHHHHHHTTTTBEEEEEEGGGGHTSGCSBSSSSE CS
    MR_MLE_C 101 iaagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgs.gglglaaslhlaaaipnllileyfldaelleeelleeple 198
                 i+a+Es+++r+ + +l  +g   +v++++ ++gG+tea+++a  ae  g + +++++  ++ g aasl la  ++   +++ + +   + +  +e++l+
  CTQ27709.1 222 ICADESCHTRESLPRL--RGRYEMVNIKLDKTGGLTEALALAGEAERQGFERMLGCMLcTSRGIAASLPLAPLAR---FADLDGPT--WLAVDVEPALR 313
                 ****************..9*************************************9658**********98773...33333333..45666666666 PP

                 EETTEE CS
    MR_MLE_C 199 vedGrv 204
                 ++ G +
  CTQ27709.1 314 FSTGVL 319
                 666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2328.05
//
Query:       CTQ27710.1  [L=235]
Description: murein peptide amidase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-11   43.2   0.0    1.1e-10   41.8   0.0    1.5  1  Peptidase_M14  Zinc carboxypeptidase
    4.9e-06   25.8   0.0    7.1e-06   25.3   0.0    1.2  1  AstE_AspA      Succinylglutamate desuccinylase / Aspartoacyla
    0.00034   20.1   0.0    0.00041   19.9   0.0    1.1  1  DUF2817        Protein of unknown function (DUF2817)


Domain annotation for each model (and alignments):
>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.8e-14   1.1e-10      91     182 ..      72     157 ..      33     159 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.8e-14
                    EEEEES-STHHHHHHHHHT-TTTTST-SBCTTSSSBS--GGGSSSSS.TTSS......S.SBSSTTSTTBHHSSTT.SHHHHHHHHHHHHTTEEEE CS
  Peptidase_M14  91 diyilpvlNPDGyeysstedrlwrknrsnakessceGvDlnRnFpdl.wnse......g.astspcsetyrgpapfsepetravlefiqkknivlf 178
                    + +++ ++NPDG ++           r+na+     GvDlnRnFp+  w+++        a ++       g++p se et a++++i++     +
     CTQ27710.1  72 RHHVVLTVNPDGCQLGL---------RANAR-----GVDLNRNFPAAnWKQGetvyrwNsAAAERDVVLLTGEQPGSERETEALCQLIHQIHPAWV 153
                    3489*************.........*****.....*********99995555567632244455556679*******************999999 PP

                    EEEE CS
  Peptidase_M14 179 idlh 182
                    +++h
     CTQ27710.1 154 VSFH 157
                    9998 PP

>> AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.2e-09   7.1e-06       4      91 ..      41     126 ..      38     136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.2e-09
                 EEEEEE-SSTT-HHHHHHHHHHHHHHHCCCESCCEEEEEESSHHHHHCTSSSSSTT-S-CTTTTTCCCCC.SSTCHHHHHHHHHHHHHH CS
   AstE_AspA   4 kvlisAGvHGnElaGvellrqllkqleeadilgeitlvplaNppAiaagsRyipidredLNRaFpgrslg.rsldealrateaerlada 91 
                 + li AG+HG+E + + +l   l+ l+++  l++  +v+++Np + + g R       dLNR Fp  + + ++   ++  ++aer ++ 
  CTQ27710.1  41 SGLIIAGTHGDENSSIVTLSCALRTLKPE--LRRHHVVLTVNPDGCQLGLRANA-RGVDLNRNFPAANWKqGETVYRWNSAAAERDVVL 126
                 679***********************998..5666778899**********999.999*******866554777777777777776555 PP

>> DUF2817  Protein of unknown function (DUF2817)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   6.8e-08   0.00041      55     121 ..      43     104 ..      23     151 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 6.8e-08
     DUF2817  55 vltsGthGveGfaGSavqvalLrealakllaegvavLlvhalNPyGfahlrrvnedNVDLnRNfldf 121
                 ++++GthG e  +      ++Lr   ++ l++      v  +NP G +   r n   VDLnRNf + 
  CTQ27710.1  43 LIIAGTHGDENSSIV-TLSCALRTLKPE-LRRHHV---VLTVNPDGCQLGLRANARGVDLNRNFPAA 104
                 456788887764322.334556654333.333333...4578**********************843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1683.25
//
Query:       CTQ27711.1  [L=538]
Description: murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-86  291.2  10.6    1.4e-86  290.8  10.6    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f
  ------ inclusion threshold ------
      0.053   13.2   0.2       0.76    9.4   0.1    2.3  2  DUF4038    Protein of unknown function (DUF4038)
      0.057   12.8   0.2       0.23   10.8   0.0    1.9  2  SBP_bac_3  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.8  10.6   2.4e-90   1.4e-86       2     372 ..      79     454 ..      78     458 .. 0.95

  Alignments for each domain:
  == domain 1  score: 290.8 bits;  conditional E-value: 2.4e-90
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC..............TCTEEEEEEEETTEEEEEESSET CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee..............dqdikkveavddytvrftlkkpn 86 
                 +vp++A++  ++s D++++tf+LR+++++sDGtp+tAeD+v+s++rl+dp+t+s+ a++++                 +  +v+avd +t+r+ l kp 
  CTQ27711.1  79 LVPGVATR--WQSNDNRVWTFTLRDNARWSDGTPVTAEDFVYSWQRLVDPKTTSPFAWFAALagianaqniidgkaAPETLGVTAVDAHTLRVQLDKPL 175
                 79******..46************************************************99************************************* PP

                 TTTTTHCHHHHHHHGCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHH.HTTSSSEEESTTCC CS
   SBP_bac_5  87 alfltllaavpasiakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaal.qsGeiddvaeppps 184
                 + f++l+a ++  ++ ++a+ ++ ++++ +  +vg+G+Y+lk+ + ++k+v++ n +Yw++ k  + +++f  i +++++a++  ++G+id+ +++p +
  CTQ27711.1 176 PWFSNLTASFAFYPV-QKANVDSGANWTRPGSLVGNGAYVLKDRVVNEKLVVVPNTHYWDNAKTVIQQVTFVPI-NQESAATKRyLAGDIDITESFPKN 272
                 ***************.6888888889************************************************.7777777777*****999999999 PP

                 THCHHHHHTTEEEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHH...SHHHHHHHHHH CS
   SBP_bac_5 185 dieqlkeakglkvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpayka...ydpekAkklLk 280
                 + ++l ++   +v y+ p++g++y+afNt+k p +d+rvR Als+ iDr  ++++vl+ + +pa  ++p + +g+ + +++ +        ++Ak+lL+
  CTQ27711.1 273 MYQKLLKDIPGQV-YTPPQLGTYYYAFNTQKGPTADERVRLALSMTIDRRVMAEKVLGTGEKPAWRFTPDVTAGFTPQPSQFESMsqaELNAQAKALLA 370
                 9999999999999.*****************************************************************9987667774479******* PP

                 HTT-BCSSTSCEETCEEEEEEEEETTSHHHHHHHHHHHHHHHH.TTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHST CS
   SBP_bac_5 281 eaGykdgdggglrekklkltlllasgspaekaiaeliqqqlkk.iGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflss 372
                 +aGy  +         ++ ++ll+++s+ +++ia ++++++kk +G++v++++ +w +ty ++++ g+fd+i  +w +dy +p++fl+ ++s+
  CTQ27711.1 371 AAGYGPNR--------PLKLTLLYNTSENHQKIAIAVASMWKKnLGVEVKLQNQEW-KTYIDSRNTGNFDVIRASWVGDYNEPSTFLSLLTST 454
                 ******97........5799************************************.******************************998775 PP

>> DUF4038  Protein of unknown function (DUF4038)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.043   2.6e+02      78      94 ..     222     243 ..     189     246 .. 0.73
   2 ?    9.4   0.1   0.00013      0.76      28      84 ..     412     467 ..     401     506 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.043
                 ......-S-THHHHHHHHHHHH CS
     DUF4038  78 k.....pneaYfdhvdkivela 94 
                 +     pn++Y+d++  +++++
  CTQ27711.1 222 EklvvvPNTHYWDNAKTVIQQV 243
                 244556************9987 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00013
                 H--HHHHHHHHHHHHHTT--EEEEES-...SSSS-B-TTS-BS-SST....-S-THH CS
     DUF4038  28 rltreeaekYlddRaeqGFnviqavvlaeldglkapnaygekplidndltkpneaYf 84 
                 +l+++e+++Y+d R++ +F vi a+ + ++++  +  ++   +++ ++++++n+  +
  CTQ27711.1 412 KLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEPSTF-LSLLTSTHSGNISRFNDPAY 467
                 7899***********************999933333.33333355556666555544 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.17     1e+03     111     185 ..     222     294 ..     210     314 .. 0.66
   2 ?   10.8   0.0   3.9e-05      0.23      25      64 ..     396     435 ..     386     438 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.17
                 SEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEE.EEEHHHHHHHHHHCCGCCEEEEECGGCEC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 111 kkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdav.vadspvlaylvkknpdkkvvlveeplsse 185
                  k++v+ ++ + + +k    ++++ v+ ++ ++a+++  +g +d +  + + + + l+k+ p++  +   ++l ++
  CTQ27711.1 222 EKLVVVPNTHYWDNAKTVI-QQVTFVPINQESAATKRYLAGDIDITeSFPKNMYQKLLKDIPGQVYTP--PQLGTY 294
                 4678888888888888744.478888888888889999999999763344444444444444444443..444444 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  25 dvdlakaiakrlgvkvefvpvswdelipalksgkvDiaia 64 
                  + +a    k lgv+v++++++w++ i++ ++g++D++ a
  CTQ27711.1 396 AIAVASMWKKNLGVEVKLQNQEWKTYIDSRNTGNFDVIRA 435
                 677899999**********99***************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3984.66
//
Query:       CTQ27712.1  [L=128]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1043.97
//
Query:       CTQ27713.1  [L=277]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.14   12.5   0.0       0.23   11.7   0.0    1.3  1  Pro-kuma_activ  Pro-kumamolisin, activation domain


Domain annotation for each model (and alignments):
>> Pro-kuma_activ  Pro-kumamolisin, activation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.3e-05      0.23      60     101 ..      83     123 ..      77     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.3e-05
  Pro-kuma_activ  60 seeaidaVrnwLessgiaasrhsdtkgwiafsatvaqverll 101
                     ++e+i+++ nw ++++i ++++++ kgw ++s t + ++ l+
      CTQ27713.1  83 NKEEIKSLINWTKKKNIDIRHVTAAKGWFEIS-TLKAIKPLF 123
                     6788*************************997.456666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2063.04
//
Query:       CTQ27714.1  [L=294]
Description: putative transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-35  121.3   0.3    3.4e-35  121.3   0.3    1.6  2  LysR_substrate  LysR substrate binding domain
    1.7e-23   82.3   2.0      3e-23   81.5   2.0    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0038   17.1   0.2      0.011   15.6   0.1    1.8  2  MarR_2          MarR family
     0.0086   15.6   0.0      0.016   14.7   0.0    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
       0.03   14.4   0.4      0.062   13.4   0.4    1.5  1  HTH_20          Helix-turn-helix domain
      0.052   13.0   0.1        0.2   11.1   0.0    1.9  2  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
       0.08   12.8   2.5      0.094   12.5   0.1    2.3  3  HTH_IclR        IclR helix-turn-helix domain
      0.097   12.8   0.2       0.27   11.4   0.2    1.7  1  HTH_28          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.74   1.7e+03     144     194 ..      15      60 ..       7      64 .. 0.56
   2 !  121.3   0.3   1.5e-38   3.4e-35       2     205 ..      91     293 ..      90     294 .] 0.94

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.74
                     HHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCCH CS
  LysR_substrate 144 alvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrels 194
                     + v+ G   a + r+ ++    + +++ + ++e++ +  + l++r  r+ls
      CTQ27714.1  15 QVVREGSFTAAAQRLGLA----QSGVS-RAVRELEERLGVQLLVRTTRRLS 60 
                     555555555555555543....35555.55555555666666666666655 PP

  == domain 2  score: 121.3 bits;  conditional E-value: 1.5e-38
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEE.EEEEEEEEETTSGGGG.SS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLa.eeplvlvaspdhpLar.ge 94 
                     + ++g++ri a++++   +l p la f+ ryP+++lel +++  +++d +a++ +D+++r+gp+  sg++a+++  + ++ +v  p+h + r g 
      CTQ27714.1  91 QTPSGTVRINASQHAIDKVLLPKLAVFKHRYPDIRLELISES--RFVDIIAQR-FDAGVRLGPEVVSGMIAVRISpDMEMAVVGTPEH-FRRyGF 181
                     789***************************************..****99999.*********************999**********.999999 PP

                     SECGGGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEE CS
  LysR_substrate  95 pvsledLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvy 187
                     p +++dL  +p+i ++ g g  + ++l+   ++   +p++ + + +  + + +++ GlG+a++p+ ++ d+la+g l+ ++l+ +  + e +++y
      CTQ27714.1 182 PQTPADLVAHPCIAYQFGDGslYAWELNVDGKKITHPPQGQWAFADSYMEAKAARLGLGLAYVPEELITDDLAQGTLI-RVLQRYSQRLEGSFLY 275
                     ***************98888779999999999999999****************************************.*****99996666666 PP

                     ETTCCCHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflr 205
                      ++r  spa+ra+id lr
      CTQ27714.1 276 YPHRNVSPALRAVIDTLR 293
                     66666**********997 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   2.0   1.3e-26     3e-23       2      60 .]       8      66 ..       7      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 1.3e-26
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++l lf +v++egsft+AA++Lgl+q+ vsr++++LEe+lgv+L++Rt+r+l+LT+aGe
  CTQ27714.1  8 NDLYLFMQVVREGSFTAAAQRLGLAQSGVSRAVRELEERLGVQLLVRTTRRLSLTQAGE 66
                7899******************************************************7 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.8e-06     0.011      23      48 ..      21      46 ..      10      46 .. 0.88
   2 ?   -3.8   0.0       5.6   1.2e+04      21      32 ..     252     263 ..     245     265 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.8e-06
                EHHHHHHHHTSSHHHHHHHHHHHHHT CS
      MarR_2 23 tvgelarrlglsksavsrilkrLvaa 48
                + ++ a+rlgl +s vsr++++L+++
  CTQ27714.1 21 SFTAAAQRLGLAQSGVSRAVRELEER 46
                67889******************986 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.6
                 EEEHHHHHHHHT CS
      MarR_2  21 dltvgelarrlg 32 
                 dl++g l r l+
  CTQ27714.1 252 DLAQGTLIRVLQ 263
                 467777777665 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.2e-06     0.016      23      43 ..      25      45 ..      21      46 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.2e-06
      HTH_24 23 LAerlglSpstvnrrlkrLee 43
                 A+rlgl +s v+r +++Lee
  CTQ27714.1 25 AAQRLGLAQSGVSRAVRELEE 45
                59******************8 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.4   2.8e-05     0.062      26      60 ..      21      57 ..      15      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.8e-05
                -HHHHHHHHTS-HHHHHHHHHHHHH.CTT.EEEECTE CS
      HTH_20 26 taselaerldlskntlsyHLrvLee.agL.vevvreg 60
                ++++ a+rl+l+++ +s+ +r+Lee  g  + v++++
  CTQ27714.1 21 SFTAAAQRLGLAQSGVSRAVRELEErLGVqLLVRTTR 57
                78999********************888877777776 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.9e-05       0.2      21      50 ..      14      42 ..      11      43 .. 0.84
   2 ?   -2.6   0.0       1.7   3.7e+03      43      51 ..     257     265 ..     254     270 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.9e-05
  HTH_Tnp_ISL3 21 lelllesrsvkavArqlgvSwtTVwrildr 50
                  ++ ++e+ s++a+A++lg+  + V r++++
    CTQ27714.1 14 MQVVREG-SFTAAAQRLGLAQSGVSRAVRE 42
                  5567778.***************9999875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.7
  HTH_Tnp_ISL3  43 TVwrildry 51 
                   T++r+l ry
    CTQ27714.1 257 TLIRVLQRY 265
                   667777666 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.2e-05     0.094      17      45 ..      18      46 ..      10      48 .. 0.88
   2 ?   -1.8   0.1       1.3   2.9e+03      11      26 ..      51      66 ..      49      68 .. 0.75
   3 ?   -2.2   0.0       1.6   3.6e+03      19      35 ..      81      97 ..      77      98 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.2e-05
                SS-BHHHHHHHHTS-HHHHHHHHHHHHHT CS
    HTH_IclR 17 qeltlselArrtglpkStvhRlLqtLvel 45
                +e +++  A+r+gl+ S v+R ++ L+e+
  CTQ27714.1 18 REGSFTAAAQRLGLAQSGVSRAVRELEER 46
                77899*********************985 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
                T-CTTBSS-BHHHHHH CS
    HTH_IclR 11 alaeapqeltlselAr 26
                +l +++++l+l++  +
  CTQ27714.1 51 LLVRTTRRLSLTQAGE 66
                5678899999998665 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.6
                -BHHHHHHHHTS-HHHH CS
    HTH_IclR 19 ltlselArrtglpkStv 35
                ++l+ lA+    p  tv
  CTQ27714.1 81 MGLATLAHYRQTPSGTV 97
                78888888777777776 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00012      0.27       9      45 ..      16      53 ..      13      58 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
      HTH_28  9 laaGhsvreaArelgisrrtvyrWikryee.gGiagLv 45
                + + +s ++aA++lg+ ++ v+r ++ +ee  G++ Lv
  CTQ27714.1 16 VVREGSFTAAAQRLGLAQSGVSRAVRELEErLGVQLLV 53
                5677899**********************988887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2303.10
//
Query:       CTQ27715.1  [L=352]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-05   23.4   0.1      0.063   12.5   0.1    2.4  2  Hydrolase_4    Serine aminopeptidase, S33
    7.8e-05   22.3   0.1    0.00098   18.7   0.0    2.4  2  DLH            Dienelactone hydrolase family
    0.00012   21.7   0.1    0.00045   19.9   0.1    1.8  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
    0.00021   21.0   0.0     0.0024   17.6   0.0    2.3  1  Abhydrolase_1  alpha/beta hydrolase fold
    0.00059   18.6   0.0     0.0014   17.4   0.0    1.6  2  AXE1           Acetyl xylan esterase (AXE1)
     0.0022   17.5   0.6      0.018   14.6   0.6    2.2  2  Peptidase_S9   Prolyl oligopeptidase family
     0.0035   17.3   0.0     0.0051   16.8   0.0    1.3  1  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   2.4e-05     0.063      24      88 ..      80     146 ..      54     183 .. 0.82
   2 !    8.6   0.0   0.00039         1     185     233 ..     282     328 ..     273     333 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.4e-05
  Hydrolase_4  24 aeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpel..plfllGhSmGGl 88 
                  a+ La+qGf ++a+D    G+s+g    v+s d  ++D++a+v+ +  +++    ++ llG    G 
   CTQ27715.1  80 AQTLAEQGFVTLAFDPSYTGESGGYPRNVASPDINTEDFSAAVDFLGLQKEVDrnRIGLLGICGWGG 146
                  899*****************************************99844433324777777654444 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00039
  Hydrolase_4 185 eraakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHe 233
                  + a+++t+P+l++ Ge+    ++  ++++++++gsk+k l + pg+ H 
   CTQ27715.1 282 SYASEVTIPTLIVTGEK--AHSRYFAEDAFKAIGSKEKALVIVPGANHV 328
                  568899*********86..55677889********************95 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.8e-07   0.00098      31     126 ..      78     162 ..      46     168 .. 0.67
   2 ?   -2.7   0.0       1.4   3.6e+03     137     170 ..     281     312 ..     273     328 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.8e-07
         DLH  31 diserlaeeGYvalaPd.lYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaevpevdaav 126
                   ++ lae+G+v la d  Y+++              +++ s+      ++d++aav++l  ++ev+ +++g+ G C  G +al+ aa + +v+a++
  CTQ27715.1  78 LYAQTLAEQGFVTLAFDpSYTGES---------GGYPRNVASPD---INTEDFSAAVDFLGLQKEVDRNRIGLLGICGWGGMALNDAAMDTRVKAVA 162
                 456666666666666442233333.........33333333333...446899************************9999********999**987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.4
         DLH 137 leeaakikapilalfgeeDefipadevekleeal 170
                 l++a ++  p l++ ge+ ++  ++  e+  +a+
  CTQ27715.1 281 LSYASEVTIPTLIVTGEKAHSRYFA--EDAFKAI 312
                 5667788888888888887776666..3444444 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   1.7e-07   0.00045       2     131 ..      41     163 ..      41     209 .. 0.78
   2 ?   -1.1   0.0      0.45   1.2e+03     222     265 ..     282     324 ..     262     329 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.7e-07
                    S-EEEEEEEEE..TTSSSEEEEEEEESS-CCT.CCCCHTTCHHCCHGGGHHHHHTT-EEEEEE-TTSTTS-S---TT..TTTHHHHHHHHHHHHHH CS
  Peptidase_S15   2 GvrLavdiyrPetkskeklPvlltrtPYgkndelasdkalaleelelqdkvfvarGYavVvqdvrGtggSeGeftvg..dsdeaedgadvidWlak 95 
                    G+ L  d+y+P++++++kl ++    P+g     +++++  ++++      ++++G++ +  d   tg+S G        +  +ed+++++d l  
     CTQ27715.1  41 GITLVGDLYLPKERGERKLAAIAVSGPFGA---VKEQSSGLYAQT------LAEQGFVTLAFDPSYTGESGGYPRNVasPDINTEDFSAAVDFLGL 127
                    678889***********************4...345555555444......9*********************987743344789*********** PP

                    C.TTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEE CS
  Peptidase_S15  96 q.pwsnGkVgmtGiSYlGttqllaaatgvpalkaivp 131
                    q +    ++g +Gi   G ++l  aa  + ++ka++ 
     CTQ27715.1 128 QkEVDRNRIGLLGICGWGGMALNDAA-MDTRVKAVAT 163
                    999999*******9866666665555.2444444433 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.45
                    HHHCT--S-EEEEEECCSSTTCCHHHHHHHHHCCTT-EEEEECE CS
  Peptidase_S15 222 edadkvkapvllvgGwnDwnvkngaiklyealkapgvklilgpw 265
                    + a++v++p+l+v G      +  a ++++a+ ++++ l++ p+
     CTQ27715.1 282 SYASEVTIPTLIVTGEKA-HSRYFAEDAFKAIGSKEKALVIVPG 324
                    467899999999999888.7778888999999999888888776 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   9.3e-07    0.0024      22     255 ..      80     332 ..      64     334 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9.3e-07
                    HHHHHHTTSEEEEEEETTSTTSSSTTTGB..CHHSHHHHHHHHHHH.HHHCTTSSEE.EEEET.HHHHHHHHHHHHHGGGEEEEEEESECSSCCHH CS
  Abhydrolase_1  22 apaLakdgfdvillDlrGvgySspapacin.ddygtasvaddldri.ldalgddklt.lvGhS.mGGmialayaaeyperVkalvllgaidpaasl 113
                    a++La++gf ++++D+   g+S   p+ +  +d +t ++ + +d++ l++  d++ + l+G + +GGm al+ aa+ + rVka+++       +++
     CTQ27715.1  80 AQTLAEQGFVTLAFDPSYTGESGGYPRNVAsPDINTEDFSAAVDFLgLQKEVDRNRIgLLGICgWGGM-ALNDAAM-DTRVKAVATSVM----YDM 169
                    78************************9766**************99955555555555****956665.5555555.799***999888....888 PP

                    HHHHHHHHH.HHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHC.. CS
  Abhydrolase_1 114 ieaqrqqak.sfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieqwpttdsaklllrlre.. 206
                    ++a+ + +  +  ++   ++ +  r    + + d ++ ++++   +d     d  ++    ++  + +l ++    ++++ +++++++    r+  
     CTQ27715.1 170 SRAMGHGVGdGKDRYTTADRRAVLRYLNVQRWKDAANGTFVPGG-HDIY--VDDKGNVSAADRILPETLPANPNPVLKEFFDYYRMPRGFHPRSvn 262
                    88888776425666777777777788888888888888777755.3333..566666666666777777777777777777777777777777777 PP

                    .....................THHHHSEEEEEEE..TTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 207 .....................lknvlaptlvisg..tsDplvppkaledlaqllpkkrlvvisdagHlafle 255
                                          ++v++ptl++ g  ++ +++ ++a   + ++  +k lv++++a H ++++
     CTQ27715.1 263 stgawnatmplsfmnmpllsyASEVTIPTLIVTGekAHSRYFAEDAFKAIGSK--EKALVIVPGANHVDLYD 332
                    77777777777777777777777888888888776666666666666666533..45788888888777665 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.82   2.1e+03      31      77 ..      22      52 ..      12      73 .. 0.59
   2 !   17.4   0.0   5.5e-07    0.0014     159     207 ..     119     167 ..     114     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.82
                HHHHHHTS----EEEEE--S-SSEEEEEEEEEEGGGEEEEEEEEEES CS
        AXE1 31 eleelrkvdleleleeadfelkavkvydltfegvrgarikaklvlPk 77
                + +e+ kvd                  ++tf+   g  + + l lPk
  CTQ27715.1 22 TFAESLKVDH----------------RKVTFQNRYGITLVGDLYLPK 52
                4444444443................345555555555555555555 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 5.5e-07
                 HHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH-SS-SEEEEES-S CS
        AXE1 159 vrlveivaslpevDeeRvavlGasqGGalalavaalekrikavvadyPf 207
                   +v+ +   +evD +R++ lG    G++al  aa++ r+kav++++ +
  CTQ27715.1 119 SAAVDFLGLQKEVDRNRIGLLGICGWGGMALNDAAMDTRVKAVATSVMY 167
                 56777788889********************************999866 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.6   6.9e-06     0.018       7     107 ..      80     175 ..      74     210 .. 0.78
   2 ?    0.3   0.0      0.16   4.1e+02     174     209 ..     314     351 ..     265     352 .] 0.66

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.9e-06
                   HHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEET.HHHHHHHHHHHH-GGG-SEEEEESE---CC CS
  Peptidase_S9   7 lqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgS.yGGyltgaalnqrpdlFkaavaevpvvdvl 102
                   +q+la++G+v ++ ++  +g+ G   ++  + +      +Df aa+++l  ++ vd++r+++ G    GG+  + a++  ++    ava   ++d+ 
    CTQ27715.1  80 AQTLAEQGFVTLAFDPSYTGESGGYPRNVASPD---INTEDFSAAVDFLGLQKEVDRNRIGLLGICgWGGMALNDAAM-DTR--VKAVATSVMYDMS 170
                   7999****************9999999876665...556899**********************86258888888877.333..3455566677777 PP

                   CHHCS CS
  Peptidase_S9 103 rydsd 107
                   r + +
    CTQ27715.1 171 RAMGH 175
                   76665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.16
                   -S.EEEEEETTS-SSTTSSHHHH.HHHHHHHHHHHHHC CS
  Peptidase_S9 174 kn.vlllifpdegHgvgkprakv.eelarllaFlkeal 209
                    +   l+i p+++H+   ++      +a++++F+k +l
    CTQ27715.1 314 SKeKALVIVPGANHVDLYDNVAGkIPFATFAQFFKTNL 351
                   33367889999999666666655588888888888776 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     2e-06    0.0051       4      62 ..     116     177 ..     113     219 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2e-06
                 HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHH...HHHHHSSSEEEEEEES--SB--SSE CS
      BAAT_C   4 eYFeeainyllrhpkvkkdkigllGiSkGgelal...llasflkkisavvlingsavvvegk 62 
                 e F  a+++l  + +v +++igllGi+  g +al   ++ ++ k++   v++  s ++  g 
  CTQ27715.1 116 EDFSAAVDFLGLQKEVDRNRIGLLGICGWGGMALndaAMDTRVKAVATSVMYDMSRAMGHGV 177
                 66999***********************9999983334666777777778887777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2568.17
//
Query:       CTQ27716.1  [L=400]
Description: Transcription regulatory protein OpdE [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-31  109.6  62.7    1.5e-27   96.5  48.9    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.031   13.9   0.9      0.031   13.9   0.9    2.2  2  DUF3341   Protein of unknown function (DUF3341)
       0.24   11.3   0.1       0.24   11.3   0.1    3.2  2  DUF5337   Family of unknown function (DUF5337)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5  48.9   2.4e-31   1.5e-27       2     332 ..      18     330 ..      17     334 .. 0.88
   2 !   23.5  17.4   3.8e-09   2.3e-05      66     172 ..     279     382 ..     275     399 .. 0.83

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 2.4e-31
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                  l++f+ +++ ++  ++l+  +a dl+i++  +g  ++l +++a+++sl ++rl+  + r+++ll   +l+a++++++++ass+++ +++r+l G+  g
  CTQ27716.1  18 TLCVFVLIASEFMPVSLLT-PIAGDLHITEGLAGQGIALSGALAVLTSLTISRLTGSLDRKWLLLGLTALMAASGVIIALASSFPVYMLGRALIGIVIG 115
                 5899**************9.8*************************************999955555555555558888768888************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv..lfllllpeepperkrkspkeeekgtgpaplv 197
                 ++++++aa + +++p+++ +ra++++++g++l+++++++lg++l + +gWr++f+ l ++++lafv  +  + lp  +++r+++++             
  CTQ27716.1 116 GFWSMSAATAIRLVPQRQVPRALAIFNGGNALATVVAAPLGSYLGATVGWRGAFLCLVPLAVLAFVwqC--ISLPSMKSPRAPQRQGSV---------- 202
                 ****************************************************************99666..777888888888877666.......... PP

       MFS_1 198 pawkallkdpvlw.illialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglal 293
                   +++++ +   + + l+a+ lff+g ++l+t++  +l +v   s  gl l++l++++++++g  l  +++ l  r     ++l+a++ll++a +g +l
  CTQ27716.1 203 --LRLFRLST--LsLGLLACGLFFMGQFTLFTYVRPFLETVTQVSpsGLSLILLTMGIAGFIGTLL--ITTVLNAR---FYPTLVAIPLLMAAIAGTLL 292
                 ..67777777..3359999999999********************999888888899999999666..77777788...66788888888888888888 PP

       MFS_1 294 lavtssavllllvlvliGfglgfvfpsllalasdlappe 332
                 la   ++  ++++l l+G+ +  + + +++++++ +p++
  CTQ27716.1 293 LAGH-HTGSVAVLLSLWGLLATAAPTGWWTWIARTLPED 330
                 8888.67777779******99999999999999999865 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 3.8e-09
       MFS_1  66 llglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsll 163
                  + ll+ a++++lll a +++  ++vl  l Gl a a+ ++  ++ia+  p+ +   + gl+ a ++l+++lg  +ggl+ +slgW+++f + ++++l 
  CTQ27716.1 279 AIPLLMAAIAGTLLL-AGHHTgSVAVLLSLWGLLATAAPTGWWTWIARTLPE-DAETGGGLMVAVIQLSIALGSTVGGLVFDSLGWHSTFALSGLLLLG 375
                 556777888867777.4444559****************************9.********************************************** PP

       MFS_1 164 afvlfllll 172
                 a+ +   +l
  CTQ27716.1 376 AAGV--TFL 382
                 9542..333 PP

>> DUF3341  Protein of unknown function (DUF3341)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.5      0.58   3.5e+03      58      86 ..      82     109 ..      74     122 .. 0.54
   2 ?   13.9   0.9   5.2e-06     0.031      39      81 ..     236     278 ..     215     285 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.58
                 HHHHHHHHHHHHHIIIIISS---STT--S CS
     DUF3341  58 GllGlalalllqvytsvvdyplnigGkPl 86 
                 Gl++l+ a  +++  +  ++p+ + G+ l
  CTQ27716.1  82 GLTALMAASGVIIALA-SSFPVYMLGRAL 109
                 5554444444433333.235555555544 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5.2e-06
                 -TTTSS--SS-STHHHHHHHHHHHHHHHHHHHIIIIISS---S CS
     DUF3341  39 ldealglkksrlpliallgGllGlalalllqvytsvvdyplni 81 
                 l+++ ++++s l+li l++G++G++  ll++++ ++ +yp  +
  CTQ27716.1 236 LETVTQVSPSGLSLILLTMGIAGFIGTLLITTVLNARFYPTLV 278
                 7888999*********************************876 PP

>> DUF5337  Family of unknown function (DUF5337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   2.0      0.25   1.5e+03      20      54 ..      53      88 ..      48     108 .. 0.72
   2 ?   11.3   0.1   3.9e-05      0.24      22      62 ..     148     187 ..     145     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.25
     DUF5337 20 iavtmllwlgaq.wigeqlglsnRyalLfdLaAlAa 54
                ia +++l ++ +  i    g   R  lL+ L Al a
  CTQ27716.1 53 IALSGALAVLTSlTISRLTGSLDRKWLLLGLTALMA 88
                777777777777567777788889999999998744 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3.9e-05
     DUF5337  22 vtmllwlgaqwigeqlglsnRyalLfdLaAlAaliwalvvt 62 
                 +t+++  + +++g+++g+ + +  L+ La+lA ++w  +  
  CTQ27716.1 148 ATVVAAPLGSYLGATVGWRGAFLCLVPLAVLA-FVWQCISL 187
                 6788888889*********************6.99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3011.12
//
Query:       CTQ27717.1  [L=289]
Description: Uncharacterized oxidoreductase YtbE [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-38  131.4   0.1    1.9e-36  125.8   0.1    2.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.1   1.1e-40   1.9e-36      13     292 ..      21     262 ..      14     264 .. 0.89

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 1.1e-40
                   .TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH....-TTTGGG-EEEEEE--SSSTTSSSS-HH.HHHHHHHHHHHHHT-S-EEE CS
  Aldo_ket_red  13 eeiskeealellrraleaGinffDtAevYgkgqseellGealkk....srkkreeviiatKvdlrdaeiksglske.niresleeslkrLgtdyvDl 104
                   ++++k+e  +++  a+  G++++DtA vY    +e+ +Gea+ +        re ++i++K+      + +++       + + +slk+ g++y Dl
    CTQ27717.1  21 KVTDKAECKQAVLNAIRTGYRLIDTAAVY---DNEDAVGEAVREaiaeGLCTREALFITSKL------WVQDMANTgMAKAGIAASLKKSGLEYYDL 108
                   467899999********************...89999999777777658889**********......4444444414455578888889******* PP

                   EEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTT CS
  Aldo_ket_red 105 lllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplggGlltgky 201
                   +llH+   ++     +++alee +++G ++aiGvSnf    l +  ++  +k+ ++qve +++   ++   le++k++ v+  a+ plggG      
    CTQ27717.1 109 YLLHQAMGDYF---SAWRALEEAYEAGTLKAIGVSNFYPHVLANFCETVRIKPMVNQVELHPY--FAQPAALEAMKHYHVQPEAWAPLGGGRHN--- 197
                   *****999988...******************************99*****************..************************99877... PP

                   SS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 202 qseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                       ++                    ++  l+ +a  h +++aq++lr+ +  +++++vip+++++e++e+n++ +++ l++ e+a++ +l
    CTQ27717.1 198 ----PY--------------------QDALLRGIADAHQKTIAQVVLRWNV--QRGVTVIPKSTRQERIEENFAIWDFVLTDNEMAQISAL 262
                   ....33....................3578999******************..9*********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2249.69
//
Query:       CTQ27718.1  [L=732]
Description: Beta-mannosidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-09   36.3   0.0    1.6e-08   35.2   0.0    1.6  2  Glyco_hydro_2    Glycosyl hydrolases family 2
    4.4e-06   26.7   0.1    1.9e-05   24.6   0.1    1.9  1  Glyco_hydro_2_N  Glycosyl hydrolases family 2, sugar binding 
    2.7e-05   23.4   0.2    0.00028   20.1   0.2    2.2  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom
    7.5e-05   23.3   0.0    0.00027   21.5   0.0    1.9  2  Mannosidase_ig   Mannosidase Ig/CBM-like domain
  ------ inclusion threshold ------
       0.03   14.9   0.1       0.07   13.7   0.1    1.6  1  BetaGal_dom4_5   Beta-galactosidase jelly roll domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_2  Glycosyl hydrolases family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   4.5e-12   1.6e-08       3     110 .]     195     304 ..     193     304 .. 0.77
   2 ?   -4.1   0.0         5   1.8e+04      33      55 ..     699     721 ..     692     726 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 4.5e-12
                    CCCEEEEEEEETC.SEEEEEEEEEEEEECSSSSCEEEEEEEEETTSTEEEEEEEEEEEESTT-EEEEEEEEEES--BBEC...CCB--EEEEEEEE CS
  Glyco_hydro_2   3 Iedvfvttdlsdd.ksakvevevelendsdksvevtleteikdaegkkvkeessvlslgngetksiklelevknpklWsp...etPnLYtlkveld 94 
                    I+ v +++d+++  ++  +++e++++  +  +v+++l+++  ++ g   +++ +v+ +++ +     ++l +++ klW+p   ++PnLY+++++l+
     CTQ27718.1 195 IDEVILRPDWQQGlEQPMLRAEIRYRAVTPGPVTLRLTATPDNFSGPRFHQAFAVTLEKTAGVLH--VSLPMPSAKLWWPvgaGKPNLYRVRATLT 288
                    66677777777766666777777777777777777777777777777777766665554444433..48999999********************* PP

                    ETTEEEEEEEEEE-B- CS
  Glyco_hydro_2  95 kdgkvidevstrfGfR 110
                    +d    d+  tr+G+R
     CTQ27718.1 289 DDRGMMDTAVTRTGLR 304
                    ***************9 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 5
                    SSCEEEEEEEEETTSTEEEEEEE CS
  Glyco_hydro_2  33 svevtleteikdaegkkvkeess 55 
                    ++ vt+ ++i ++ gk+v ++++
     CTQ27718.1 699 PQPVTIVYRIDNRRGKHVGANQH 721
                    56788999999999998887665 PP

>> Glyco_hydro_2_N  Glycosyl hydrolases family 2, sugar binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   5.3e-09   1.9e-05      47     133 ..      52     136 ..      24     158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 5.3e-09
                      ESSSTSS.TCTTBHHSS-CEEEEEEEEEE-HHHHHSEEEEEESEEESEEEEEETTEEEEEEE-TTS-EEEEGGGGS-SEEEEEEEEE CS
  Glyco_hydro_2_N  47 tnveypidvdsadlptvngtgvYartfeidskwaekkvrllFegvtsasevwvngqevgkrqgsylpfefDltpylseGknriavkv 133
                      + ++ p ++ sa     +g  +Y+++f++   + +    l+F+gv+   ev +ng+ +  ++g ++ f +D++  ++  +n++av v
       CTQ27718.1  52 RTLRVPANWYSAGYDH-QGALWYRHQFTLHGLSPDAMATLVFDGVDYFAEVALNGKTLARHEGYFQRFPVDISGAIRR-HNQLAVRV 136
                      5566667777776665.899*****************************************************98876.79999999 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   7.8e-08   0.00028      10     163 ..     317     454 ..     309     511 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 7.8e-08
                      ETTEEE-EEEEEE-S-BTTTBTS--HHHHHHHHHHHHHCT--EEEETTS--SHHHHHHHHHHT-EEEEE-S-B-TTSCCCCSHCT-CCCCTTTS CS
  Glyco_hydro_2_C  10 iNgkrllfkGvnrHedadrrGraideellvkDlkllkqlniNavRtsHYPnqeevyelcDeyGlyvidEanlethglaqklgeiepsynvladn 103
                      iN++rl++kG n      +   +++ ++ ++D++l+ ++n+Na+R         +ye++De+Gl++ ++ +l+  g                d 
       CTQ27718.1 317 INDRRLFIKGSNYIGSPWL--STMTRKKYRRDFRLVTAMNANAIRVHGHVAGRALYEVADEMGLMIWQDVPLQ-WGYD--------------DS 393
                      8888888888887666555..4799999******************999999*************99888774.3333..............33 PP

                      GGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESSCHHH..HHHHHHHHHHHH-TTSEEEEETC CS
  Glyco_hydro_2_C 104 pewlkavldrieelverdkNHpsviiWSlgNEsgage..dikalaelikklDptRlvhyegv 163
                        + +  + + + ++ +  N p++i+W   NE+        k + ++ k l +t l + +g+
       CTQ27718.1 394 AAFAENAVHQTRTMMDQFGNSPAIIVWGGHNEPPWNSpwMEKRFPDWRKTLNQT-LTQRVGD 454
                      4456667778899999****************9544311234455555555554.4444555 PP

>> Mannosidase_ig  Mannosidase Ig/CBM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.1   7.6e+03      39      79 ..     247     290 ..     227     301 .. 0.60
   2 !   21.5   0.0   7.6e-08   0.00027       2      86 ..     643     719 ..     642     725 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.1
  Mannosidase_ig  39 vtvgansstevaeidvdellaat......ggadpravvlvarledat 79 
                     + v   ++  v++++++     +      g+ +p+ + ++a+l+d +
      CTQ27718.1 247 FAVTLEKTAGVLHVSLPMPS--AklwwpvGAGKPNLYRVRATLTD-D 290
                     44444555555555554222..12355556667777777777775.4 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 7.6e-08
  Mannosidase_ig   2 klevwvvsdllepv.qgtlelrlidltgkllaetsttpvtvgansstevaeidvdellaatggadpravvlvarledatgevlatn 86 
                     ++++w+++d++++  +++l++++   +g+ la+ + t++t+++   + v e++v+        a p++v +v+r+ +  g+ +  n
      CTQ27718.1 643 TVRLWAINDTWAACeDCRLTWQVRQ-NGQMLAQGE-TSLTLPPDAGQMVRELTVT----P---AGPQPVTIVYRIDNRRGKHVGAN 719
                     789***********999****9876.9********.******************9....5...7899******9999777766555 PP

>> BetaGal_dom4_5  Beta-galactosidase jelly roll domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1     2e-05      0.07      27     110 ..      62     138 ..      31     142 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2e-05
  BetaGal_dom4_5  27 ssdyg.fhagvrlyrgtfdldlpsgldvslsltlsggtafrvsvwlNGyqlgsyvphigpqvtFpvpegilnyngenvlavlvda 110
                     s   g +h+g ++yr +f+l+  s  d+ + l++ g   + ++v lNG+ l+++    g   +Fpv       ++ n lav vd+
      CTQ27718.1  62 SA--GyDHQGALWYRHQFTLHGLS-PDAMATLVFDG-VDYFAEVALNGKTLARH---EGYFQRFPVDIS-GAIRRHNQLAVRVDS 138
                     33..348***********665443.58888888877.56667***********5...555678888765.445557888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 5669.76
//
Query:       CTQ27719.1  [L=897]
Description: Sensory box histidine kinase/response regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-42  144.0   0.1    5.6e-22   78.0   0.0    2.7  2  Response_reg  Response regulator receiver domain
    3.1e-31  108.2   0.0    6.1e-31  107.2   0.0    1.5  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    8.4e-22   77.0   0.1    8.4e-22   77.0   0.1    3.0  3  HisKA         His Kinase A (phospho-acceptor) domain
      9e-14   51.6   0.0    1.1e-12   48.1   0.0    2.4  2  PAS_7         PAS fold
    1.4e-12   47.7   0.0    3.8e-10   39.9   0.0    2.7  2  PAS_3         PAS fold
    3.1e-09   37.0   2.5    2.8e-08   33.9   2.5    2.8  1  Hpt           Hpt domain
  ------ inclusion threshold ------
      0.032   14.1   0.0      0.064   13.1   0.0    1.4  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.1   8.8e-21   2.3e-17       1     111 [.     511     623 ..     511     624 .. 0.96
   2 !   78.0   0.0   2.2e-25   5.6e-22       1     111 [.     652     766 ..     652     767 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 8.8e-21
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH.ESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek.vdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkaga 94 
                   vl+vdD+ ++++ll ++l++ g+     +++++eal+ + e     lillD +mp+mdG+ l+ e+ + +  ++ ++i+l++ s + da+   ++g+
    CTQ27719.1 511 VLVVDDNSTNLRLLDTMLRQMGL-IPICVDNASEALRRAAEGPlWPLILLDAQMPDMDGVSLALELSALPeaRQSQIIMLSSMSRHFDANMLKRIGI 606
                   8**********************.6668***********9999899********************99998899*********************** PP

                   SEEEESSG-HHHHHHHH CS
  Response_reg  95 ddflsKpfdpeeLlkal 111
                     +l+Kp++++eL++ +
    CTQ27719.1 607 AHYLHKPVAQRELHQVI 623
                   **************987 PP

  == domain 2  score: 78.0 bits;  conditional E-value: 2.2e-25
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT.....TTSEEEEEESSTSHHHHHHHHHC CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed.....pelpviiltahseeedavealka 92 
                   +l+++D+ +++++ r+lle+ g  +++++++g+eale +++   dl+l+D++mp+mdG ++++ +ree      ++ p +++tah+ + d++++l +
    CTQ27719.1 652 ILLAEDNLVNQKVARRLLEQLGH-RCEVVSNGREALERWRAACWDLLLIDLQMPEMDGETAIRLLREETpalgrQHQPAMAMTAHAMQGDRERCLAM 747
                   89*********************.******************************************99977777789******************** PP

                   TESEEEESSG-HHHHHHHH CS
  Response_reg  93 gaddflsKpfdpeeLlkal 111
                   g d++++Kp++ e+L++a+
    CTQ27719.1 748 GFDGYIAKPVSLEALREAI 766
                   ****************998 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.0   2.4e-34   6.1e-31       2     111 ..     380     491 ..     379     492 .. 0.96

  Alignments for each domain:
  == domain 1  score: 107.2 bits;  conditional E-value: 2.4e-34
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE..EETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEE CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveika..seddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvese 97 
                 d +rLrqi+ nl++Na+kf t++ge+ + i +  +e + +++++D+GiGi +e++k +fe+fsq d+st+r++ggtGlGl+i+ +lv+lmgGe++ves+
  CTQ27719.1 380 DGPRLRQILTNLLGNALKF-THQGEVLLAIAPadDESRWRFRIRDTGIGIAPEKQKAIFEAFSQaDSSTTRRYGGTGLGLTISARLVSLMGGELTVESQ 477
                 678****************.**********9875459************************************************************** PP

                 TTTEEEEEEEEESS CS
   HATPase_c  98 pgrGttftftlple 111
                 pg G++f ftlpl+
  CTQ27719.1 478 PGTGSEFAFTLPLA 491
                 ***********985 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.1   3.3e-25   8.4e-22       1      67 []     267     332 ..     267     332 .. 0.97
   2 ?   -3.8   0.1       5.4   1.4e+04      13      24 ..     384     395 ..     381     395 .. 0.68
   3 ?   -2.7   0.1       2.4   6.2e+03      22      49 ..     817     842 ..     813     861 .. 0.64

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 3.3e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 +++ fla+++HE+rtP+++ilg+++++ ++ +lt e++eyl  + s+a+ l+h+++d+Ld+srie+g
  CTQ27719.1 267 AKSAFLANMSHEIRTPMNGILGMTQLCLDT-PLTAEQREYLSLVMSSAQSLLHIINDILDFSRIESG 332
                 5899***********************996.**********************************97 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.4
                 HHHHHHHHHHHH CS
       HisKA  13 LrtPLsailgna 24 
                 Lr+ L+ +lgna
  CTQ27719.1 384 LRQILTNLLGNA 395
                 677777777765 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.4
                 HHHHHHHC..T-HSSCHHHHHHHHHHHH CS
       HisKA  22 gnaeaLkregklteelkeyletiesear 49 
                 + ++a+    + +e l++  ++++ ea 
  CTQ27719.1 817 ALTHAIHA--NDRETLRRTAHKLRGEAV 842
                 55666655..466888887777777776 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   4.2e-16   1.1e-12       1     113 [.       9     120 ..       9     122 .. 0.89
   2 ?    0.5   0.0      0.25   6.3e+02     100     114 ..     237     251 ..     194     252 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 4.2e-16
       PAS_7   1 lenmsqGisvfDadlrLvawNrrylelldlpeelvqvgvpleellrynaerg.efgagdveaeverrlaaaragkphsfererpdgrvievrgnplpdg 98 
                 l+ ++++++++D+++rL awN+++   +   +  + vg++le+l +   + g ++++g+++   e+++++ r+   ++ e++++ +r i v++++l+dg
  CTQ27719.1   9 LNLLPSAVMIYDERERLQAWNDKVALFYPTIAPWLAVGATLESLAEKFIDAGyNIDPGRQQTLREAIIRNCRQ--TNHCEVRQSGNRRIYVQHQQLADG 105
                 5678899***************************************999888345588888888888876665..778999999*************** PP

       PAS_7  99 GfVttytDiTerrra 113
                 G+V+ +tDiTe  +a
  CTQ27719.1 106 GIVSLHTDITELDEA 120
                 **********98776 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.25
       PAS_7 100 fVttytDiTerrrae 114
                 ++ t +DiT+r++ae
  CTQ27719.1 237 VIGTLQDITRRKAAE 251
                 57799*******998 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.5e-13   3.8e-10       2      88 ..     152     240 ..     151     241 .. 0.96
   2 ?    4.9   0.0     0.013        33       8      45 ..     800     837 ..     798     849 .. 0.89

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.5e-13
       PAS_3   2 iyvserveeilGyspeellgkveswldlvhpeDrervrealqealkkge.pyegeyRirrkdGeyrwveararvi.rdengkpvrvigv 88 
                 + v+++   ++G s+++ +  ++++l+lvh +Dr+ +++a+ ++ ++   ++e+e R++++  ++rw+  +++++  + + +  rvig+
  CTQ27719.1 152 LQVNDTLLAMVGQSRAQWRYPLRFMLNLVHEDDRATLQQAMIASQNEHMpVFECELRVQHPTQGWRWMLLSGQIVtLNMQQQAERVIGT 240
                 67999****************************************9999888***********************************98 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.013
       PAS_3   8 veeilGyspeellgkveswldlvhpeDrervrealqea 45 
                 vee+lG+ +e l +  + +  ++h  Dre +r++ +++
  CTQ27719.1 800 VEELLGLFAEGLDAATSALTHAIHANDRETLRRTAHKL 837
                 799****************************9988765 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   2.5   1.1e-11   2.8e-08       1      81 [.     802     877 ..     798     881 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.1e-11
                 HHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHCTSCHHHHHHHHHHHHHHHH CS
         Hpt   1 ellelfleeaeelleqleqaldqedlqelaraaHtLKGsagmlGltelaelahelEdlldragelelepellealkallea 81 
                 ell lf e ++    +l  a+ ++d++ l+r+aH+L G a +lG+++la + ++lE+     +  +++++  + l+++l++
  CTQ27719.1 802 ELLGLFAEGLDAATSALTHAIHANDRETLRRTAHKLRGEAVTLGFQRLAGVLQQLES-----QATSPDRTVPDDLRDALAE 877
                 578888888888888999999************************************.....7777777777777777765 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.5e-05     0.064      30      83 ..     413     464 ..     384     491 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.5e-05
  HATPase_c_3  30 rgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlklAsls 83 
                  +++  +++i+D G G+ +e+ k  ++  +++ +  ++ + +G  G+Gl  ++  
   CTQ27719.1 413 DESRWRFRIRDTGIGIAPEKQKAIFEAFSQADS--STTRRYGGTGLGLTISARL 464
                  356789**************9999998777777..58899*******9877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 6303.55
//
Query:       CTQ27720.1  [L=144]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1146.72
//
Query:       CTQ27721.1  [L=464]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.1e-113  378.6   0.8   3.6e-113  378.3   0.8    1.0  1  DUF3131   Protein of unknown function (DUF3131)


Domain annotation for each model (and alignments):
>> DUF3131  Protein of unknown function (DUF3131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.3   0.8    2e-117  3.6e-113       2     365 ..      54     423 ..      53     424 .. 0.98

  Alignments for each domain:
  == domain 1  score: 378.3 bits;  conditional E-value: 2e-117
     DUF3131   2 yAraAWsYfernyqpeTGLvnsvddypsvTlWdvGsyllAlvaAreLglidkkefderirklLktLaklplfkgelPnkvyntrtlemvdygnnpkeeg 100
                 +A++AW+Y e+n+qp+TGLvn +d+ p +TlW++G++l+Al aAreLgl++++efd+r++ lL+tL++l+l+++  P ++y+t+t+++vd++++p    
  CTQ27721.1  54 WAQIAWRYVENNTQPQTGLVNGSDKQPRATLWQMGDTLIALLAARELGLVKEAEFDARLTPLLGTLNRLTLTDDGSPGRLYSTQTATPVDFSGKPA--A 150
                 9**********************************************************************************************9..7 PP

     DUF3131 101 igwsAlDigRllaaLkvlktrypeyadaveaivarWslsrlvkd.gqlygaivkkdeklqvvqegrlgyeeYaarglqlwgfdvekalskepyktveve 198
                  gwsA D++Rl++aL+  ++r p+y + +++i++rW+++ ++++ g+l +a++++++  +  +e rlg +eYaa +++lwgf + ka s +p ++v ++
  CTQ27721.1 151 SGWSAKDMARLMLALRLTAERAPQYGEYIDKIILRWNFCPVIDKdGELWSASLQNGQ-RTIREELRLGDSEYAASAFRLWGFPAGKAFS-PPARHVIIY 247
                 7*****************************************866*********999.9999*************************76.66779**** PP

     DUF3131 199 gvevpvdrrdlkkteannyvvsepylleglElGfd.........aelkelaerlleaqkeryeetgkltAvsednidraPyfvystviangepWavitd 288
                  +++ vd+rd++ t++   + + p +l glE+G++         ++++e ae +   qk r+++ + ltA+++ ++++aP++v +tv+ ng++W+++ d
  CTQ27721.1 248 QRRLAVDDRDPRATWQPVVLSTLPAMLPGLEFGWQppgvpemaqKAMRERAEGIWLSQKTRWTQDKVLTARADFSLTQAPWHVEDTVWGNGYAWNTLGD 346
                 ******************************************9999***************************************************** PP

     DUF3131 289 dgkevpelrlvStkaAfawsalfedeYtqelleavkeladperGyyeGlyeetgkvnksltantNgiiLeaLlYkar 365
                 dgk +p+l  v+tka+f +++l+e+eYt++l++++++l+dp+rG++eG++e tg+vn +lt++tN+++LeaL+Yk++
  CTQ27721.1 347 DGKYYPRLGQVTTKAVFVLWTLWETEYTDALMAVTTHLNDPQRGWFEGRVEATGDVNATLTLSTNAMVLEALFYKHN 423
                 **************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3592.52
//
Query:       CTQ27722.1  [L=515]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-147  490.8   0.9   2.9e-147  490.5   0.9    1.0  1  DUF3131   Protein of unknown function (DUF3131)
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.19   11.6   0.0    1.2  1  DUF4422   Domain of unknown function (DUF4422)


Domain annotation for each model (and alignments):
>> DUF3131  Protein of unknown function (DUF3131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  490.5   0.9  3.3e-151  2.9e-147       2     366 .]      50     426 ..      49     426 .. 0.99

  Alignments for each domain:
  == domain 1  score: 490.5 bits;  conditional E-value: 3.3e-151
     DUF3131   2 yAraAWsYfernyqpeTGLvnsvddypsvTlWdvGsyllAlvaAreLglidkkefderirklLktLaklplfkgelPnkvyntrtlemvdygnnpkeeg 100
                 +Ar+AW+Yf++n qp+TGLvn+v++yps+T+Wd +syl+A++aAreLg+idk+efd+r+ k+L+tL+kl+lf++elPnk+ynt +++ v+y+n+p   +
  CTQ27722.1  50 IARNAWQYFVANFQPTTGLVNAVNKYPSTTMWDSASYLAAMTAARELGIIDKAEFDRRMLKFLATLNKLDLFRNELPNKAYNTVSGQKVNYQNKPG--E 146
                 79*********************************************************************************************9..* PP

     DUF3131 101 igwsAlDigRllaaLkvlktrypeyadaveaivarWslsrlvkd.gqlygaivkkdeklqvvqegrlgyeeYaarglqlwgfdvekalskepyktveve 198
                 ig+sAlDigR+l++Lkv+k+rypey+++++++v+ W++s++v+  g+lyga++++++  ++vqegrlgyeeY a g+qlwgf++ +a++ +py+ +e++
  CTQ27722.1 147 IGYSALDIGRMLIWLKVIKERYPEYSNSIDNVVLGWDFSHVVDPcGTLYGAYLENGQ-PKYVQEGRLGYEEYGAAGFQLWGFNTCQASRPQPYELAEIY 244
                 ******************************************************999.***************************************** PP

     DUF3131 199 gvevpvdrrdlkkteannyvvsepylleglElGfd..............aelkelaerlleaqkeryeetgkltAvsednidraPyfvystviangepW 283
                 +v+vp+d+rd+++t+++nyvvse+y+l+g+E+Gfd              +++k++a+r+++aq++ry+ tg+ltA+se+++d++Pyfvy+tv+++g +W
  CTQ27722.1 245 CVMVPYDSRDPRQTSQHNYVVSESYVLYGMEFGFDnpadrndspreyshPWMKNFADRVYQAQENRYAITGILTARSEHQLDKSPYFVYDTVFSDGFNW 343
                 *************************************************************************************************** PP

     DUF3131 284 avitddgkevpelrlvStkaAfawsalfedeYtqelleavkeladperGyyeGlyeetgkvnksltantNgiiLeaLlYkarg 366
                 ++itd+g+ vp+ ++vS kaA+++++l++++Yt++ll+a+++++++ +GyyeGlye+ + + + +tan+Ngi+LeaLl+k++g
  CTQ27722.1 344 NTITDKGQFVPNSAAVSLKAAMGMWVLWNSPYTDRLLDAIENANEAGKGYYEGLYENGDGPINEFTANNNGIMLEALLFKKEG 426
                 ********************************************************************************986 PP

>> DUF4422  Domain of unknown function (DUF4422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.1e-05      0.19     112     165 ..     128     180 ..     104     187 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.1e-05
     DUF4422 112 kkydiilpkkrklkieslyeqYkkahhiedldllreiikekypeyleafekvlk 165
                 k y+++  +k++++++  +  Y+   +i  + +  ++ike+ypey +++++v+ 
  CTQ27722.1 128 KAYNTVSGQKVNYQNKPGEIGYSA-LDIGRMLIWLKVIKERYPEYSNSIDNVVL 180
                 568899999999999999999987.8999999******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3870.30
//
Query:       CTQ27723.1  [L=443]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-86  290.0   0.7      3e-86  289.8   0.7    1.0  1  DUF3131   Protein of unknown function (DUF3131)
  ------ inclusion threshold ------
      0.024   14.6   0.1       0.41   10.6   0.0    2.7  3  FlhE      Flagellar protein FlhE


Domain annotation for each model (and alignments):
>> DUF3131  Protein of unknown function (DUF3131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.8   0.7   3.3e-90     3e-86       2     366 .]      66     421 ..      65     421 .. 0.94

  Alignments for each domain:
  == domain 1  score: 289.8 bits;  conditional E-value: 3.3e-90
     DUF3131   2 yAraAWsYfernyqpeTGLvnsvddypsvTlWdvGsyllAlvaAreLglidkkefderirklLktLaklplfkgelPnkvyntrtlemvdygnnpkeeg 100
                 +Ar+AW+Y+++n+qp+ GL+n+ d+ p+ +lW vGsyl+A+vaA++L++++++e deri  +L tL +lpl ++ lP+  y+++tl+++   +np    
  CTQ27723.1  66 WARVAWQYYVNNTQPN-GLANAHDGEPWLSLWSVGSYLFAVVAAEQLHIVTAAEGDERIAAALFTLGQLPLNAQGLPAAQYHADTLQIL---GNP---- 156
                 8*************97.***********************************************************************6...233.... PP

     DUF3131 101 igwsAlDigRllaaLkvlktrypeyadaveaivarWslsrlvkd.gqlygaivkkdek.lqvvqegrlgyeeYaarglqlwgfdvekalskepy..ktv 195
                  + sA+ +gRll+aL++l +ryp++a av+ + ++W++ +l+++  + ++a+  ++++     +   +gy+ Ya+++l+l++  +  a++++p+  +++
  CTQ27723.1 157 -DSSAIGMGRLLTALQTLLWRYPQHAAAVRDLFNQWRVGALISNsPASQAAAPLHHWTlAADEPRDSFGYRLYASHTLRLIDSAAGLAVTNPPQgqQMI 254
                 .58*****************************************54556666667774344555566899********************9999878** PP

     DUF3131 196 evegvevpvdrrdlkkteannyvvsepylleglElGfdaelkelaerlleaqkeryeetgkltAvsednidraPyfvystviangepWavitddgkevp 294
                 +++g++vp++  ++   + + +++s pyll+glElGfda+++e+a+r++++q++r++ +     +s+d  + aP   y +  a+ +p ++++ + ++ +
  CTQ27723.1 255 DIDGIMVPDEGLRTP-WGRQPSLISLPYLLTGLELGFDAQSAEIAWRIMQIQQRRHSLRVSKPPISTDYAEPAPD--YASALADRQPQSAFAPRSATPE 350
                 ***********9999.57899*************************************************99998..67889999************** PP

     DUF3131 295 elrlvStkaAfawsalfedeYtqelleavkeladperGyyeGlyeetgkvnksltantNgiiLeaLlYkarg 366
                 +++++St++Afaw+alf+++++++l+++v++l+ p +G+++Gl+ + ++vn++++++tN+i+Le+L+Y +rg
  CTQ27723.1 351 QTAITSTRTAFAWYALFRNSWSEALRQQVQTLQVPGKGWQRGLNLN-RSVNDVVDGDTNAIVLESLAYISRG 421
                 **********************************************.9********************9886 PP

>> FlhE  Flagellar protein FlhE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.6e-05      0.41      13      47 ..      50      84 ..      39      86 .. 0.87
   2 ?   -2.8   0.0      0.72   6.5e+03      29      43 ..     170     184 ..     165     188 .. 0.73
   3 ?   -0.2   0.0      0.11     1e+03      29      48 ..     294     313 ..     283     314 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.6e-05
        FlhE 13 spalappasapaasavitsvsWryellsaapaglr 47
                 p+l pp +++  +a+ ++v+W+y +++++p+gl 
  CTQ27723.1 50 FPPLPPPRELTFDEAIWARVAWQYYVNNTQPNGLA 84
                48999999999999999***************995 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.72
        FlhE  29 itsvsWryellsaap 43 
                 ++++ Wry  + aa 
  CTQ27723.1 170 LQTLLWRYPQHAAAV 184
                 688999998766655 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.11
        FlhE  29 itsvsWryellsaapaglrv 48 
                  ++++Wr+   ++++++lrv
  CTQ27723.1 294 SAEIAWRIMQIQQRRHSLRV 313
                 5789****999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3453.32
//
Query:       CTQ27724.1  [L=605]
Description: Glycosyl transferase, group 2 family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-17   63.8   0.0    5.9e-17   62.0   0.0    1.8  1  Glycos_transf_2  Glycosyl transferase family 2
    5.7e-11   42.8   0.1      4e-10   40.0   0.1    2.1  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    4.3e-08   32.8   0.0    8.4e-07   28.6   0.0    2.2  2  Glyco_transf_21  Glycosyl transferase family 21
    3.9e-06   26.9   5.6    3.9e-06   26.9   5.6    3.5  2  Glyco_trans_2_3  Glycosyl transferase family group 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   1.3e-20   5.9e-17       2     166 ..     113     305 ..     112     307 .. 0.95

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 1.3e-20
                      EEEEESS-.TTTHHHHHHHHHHH..GGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-.HHHHHHHHHHHH--SSEEEEEESSEE CS
  Glycos_transf_2   2 vviptyNe.ektlletlesllaq..dpypdfeiivvDDgStDetveileelakedprvrvirreenv.GkagalnaglraatgdyilflDaDde 91 
                       +i ty e  ++++ +++ + ++  + ++d+++ v+DDg + e ++++e+      +  +i+r  n   kag+l++gl++++gd+++++DaD+ 
       CTQ27724.1 113 LFIATYSEdVELVRLSIRDAMQMtyPGPLDYKVHVLDDGRRPEMKAVCEQE-----GANYITRQSNIgYKAGNLRNGLEHTDGDFLIICDADTR 201
                      6899****999999999999999999999**********************.....9**********99************************* PP

                      E-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS...............................EEEECCHCCCCHCCCCCCSTTC CS
  Glycos_transf_2  92 pdpdwleklvealekdgadvvlgqrprifgetdeiernkrv...............................generlyfkerkrslkgnlsfe 154
                      + p  l+ +++++ +  +dv+++q+p  f +  e e    +                               +   ++y  + +r+   n++f+
       CTQ27724.1 202 VFPTLLSHTLGYFRD--PDVAWVQTPQWFFDLPEGEDLACWlrrkaggagygvgwlaqkivgpvtigrdpffNDPRMFYDVILRRRNWANAAFC 293
                      ***************..6679999999999999999888889999**************************999999999999999999***** PP

                      STCCCEEEEHHH CS
  Glycos_transf_2 155 igsaallrreal 166
                      +g a++ rrea+
       CTQ27724.1 294 CGAASVHRREAV 305
                      *********987 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   8.8e-14     4e-10       6     133 ..     113     263 ..     108     407 .. 0.63

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 8.8e-14
  Glyco_tranf_2_3   6 vlVptfneedvlge.vlesllaqeypr...vevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvD 95 
                      ++++t+ e+ +l++  ++++   +yp    ++v v +d+ + e  +v+e+       ++ ++++++ n g   k+ +l ++l+++++d++++ D
       CTQ27724.1 113 LFIATYSEDVELVRlSIRDAMQMTYPGpldYKVHVLDDGRRPEMKAVCEQ-------EGANYITRQSNIG--YKAGNLRNGLEHTDGDFLIICD 197
                      79******99999978*****9999444689999999***********98.......4568999998877..7********************* PP

  Glyco_tranf_2_3  96 dDtvvePdtlkrllqffltpkvgavgtpvfl.lnrs..tl.........................v 133
                      +Dt+v P++l  +l +f++p+v+ v+tp+++ + ++   l                         v
       CTQ27724.1 198 ADTRVFPTLLSHTLGYFRDPDVAWVQTPQWFfDLPEgeDLacwlrrkaggagygvgwlaqkivgpV 263
                      *****************************6534332122244455555666666666666665551 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.9e-10   8.4e-07      12      66 ..     171     225 ..     164     230 .. 0.93
   2 ?    1.4   0.0     0.043   1.9e+02      90     116 ..     280     308 ..     269     312 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.9e-10
  Glyco_transf_21  12 pvgvnpKvnnllqaleaakydllvisDsdvrvkpdyLeellaaledpkvglVtsl 66 
                      + ++ +K  nl ++le    d+l+i+D+d+rv p+ L + l++++dp+v++V+ +
       CTQ27724.1 171 QSNIGYKAGNLRNGLEHTDGDFLIICDADTRVFPTLLSHTLGYFRDPDVAWVQTP 225
                      557789**********************************************987 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.043
  Glyco_transf_21  90 vlqa..klsglgfavGksmalrreaLeai 116
                      v+ +  +++ + f++G++ + rrea+ ++
       CTQ27724.1 280 VILRrrNWANAAFCCGAASVHRREAVMQA 308
                      44444789999*************99775 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   5.2         4   1.8e+04     155     185 ..      43      72 ..      19      81 .. 0.38
   2 !   26.9   5.6   8.7e-10   3.9e-06       4     193 ..     195     467 ..     192     486 .. 0.63

  Alignments for each domain:
  == domain 1  score: -5.3 bits;  conditional E-value: 4
  Glyco_trans_2_3 155 llgylgsllwsalplhlallllfsllalalv 185
                       +++++sl + al  ++  l+l+  la++ +
       CTQ27724.1  43 YWRWTASLNTDALWYAI-PLVLAETLAWIGT 72 
                      23334443333333222.3333333333333 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 8.7e-10
  Glyco_trans_2_3   4 llDaDtvlppdclreiaaelaspevaivqgpvlv.m..nvanwleelaalf.........................f..aedhgkdilvrealg 67 
                      + DaDt++ p  l  ++  +++p+va vq+p  + +  ++ ++  +l                             f   ++++  il r +  
       CTQ27724.1 195 ICDADTRVFPTLLSHTLGYFRDPDVAWVQTPQWFfDlpEGEDLACWLRRKAggagygvgwlaqkivgpvtigrdpfFndPRMFYDVILRRRNWA 288
                      6677777777777777777777777777777554235333333333333225556666666666666666666665442234444445555677 PP

  Glyco_trans_2_3  68 rvvpsvGsgaflrrsalqevg...........................................gwdgdessvsEDfdmglrl...qrkGyrvr 115
                      + +++ G+ ++ rr+a+ +++                                           +++   ++vsED + ++ l   +++ +r +
       CTQ27724.1 289 NAAFCCGAASVHRREAVMQAAlrsyvwsvdaeidrhtrdirdpvtrealqdamrphvafdteltPYK---FHVSEDIYTSILLhgdAARRWRSV 379
                      7888999999999999885555555555555555555555555555555566666665555543444...7************77778889999 PP

  Glyco_trans_2_3 116 fvpeslvkekspltlraalrQrkRwayGc..el.....eklillvrll....gylgsllwsalplhlallllfsllalalvllllllla 193
                      ++p    k  sp ++ +++ Qr ++a G    l     + ++ +++l+     ++++ +ws+l + +  ++l s ++++++ ++++ ++
       CTQ27724.1 380 MHPRIESKMLSPQDMLTWMIQRFKYAAGSldILfhdniFSRR-RFKLSlpqtLMYATTFWSYLACVWNTVFLISPVIYLFTGIPPVSAW 467
                      9999999999******************86511544542222.333224454899999*********6666666555555555544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4707.62
//
Query:       CTQ27725.1  [L=340]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-47  160.9  22.4    4.2e-47  160.8  22.4    1.0  1  OpgC_C         OpgC protein
  ------ inclusion threshold ------
       0.44   10.1  23.1        2.6    7.5  21.8    2.7  2  DUF1624        Protein of unknown function (DUF1624)
        1.1    8.2  36.7        1.9    7.5  36.7    1.5  1  Acyl_transf_3  Acyltransferase family


Domain annotation for each model (and alignments):
>> OpgC_C  OpgC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8  22.4     7e-51   4.2e-47       1     294 [.      27     336 ..      27     340 .] 0.84

  Alignments for each domain:
  == domain 1  score: 160.8 bits;  conditional E-value: 7e-51
      OpgC_C   1 RdlrlDlfRGlalvlivvdHi.pgsvlskltlrnfGfsdaAevFVflSGlavglvYgraaeregalaaaarilrRawelYvahiallvlvlaliallal 98 
                 Rdlr+D++RG+alv++vv H    s+++ ++ ++fG+  +Ae+FV lSG+++g+   ++ +++  l++   ++ Raw++Y + i+++v +l+l  ++++
  CTQ27725.1  27 RDLRIDFMRGIALVMMVVAHTeVMSIFNIFSWERFGLTTGAEGFVILSGFMLGMLNRARLQKAVLLTVGWGLYLRAWKIYQVNIIIIVTFLLLRYFPFI 125
                 9********************99***************************************************************9999999999887 PP

      OpgC_C  99 l.feesdlieel.....nlepllekplealva.lllLkyqpvyldiLplYvvllllvPlillllrrg.pwlvlalSvllwllaqlfelnlpalpsgfew 189
                   fe +++ + +     +l pl  +  e+ ++ +l L+  p ++ iL+lY++llll+Pl+l +l++g +  +l++S+l++ + q  ++ ++++p +fe 
  CTQ27725.1 126 NaFEVTHFTDRFsgtswSLYPLTPQIKETWFNiILYLQIGPHQTQILGLYIFLLLLSPLFLGMLQKGhVYPLLGVSLLIYGCWQ--RWPVRVTPCEFEF 222
                 313355555555777777777777777777662577*******************************9************9866..556999999**** PP

      OpgC_C 190 fFnpfaWQllFvlGlllglgrakke..ralpesrllvllalaivlfalvlrlawavpaleeel.....pealkeavyp..idKteLaplrllhflalav 279
                 +F+++aWQ++FvlG+ +g ++a+    +++p  +++v++ + i+l+ ++++  ++ p +  +l     p a  +a+y     K  L+p+r+l+ ++l+v
  CTQ27725.1 223 AFPLLAWQFIFVLGMCCGWYKAELIsfARTPPGKVAVVALVFIALILAFVAQNHTNPFMPPALlmhviPPAEFNAFYHtwAAKNGLGPVRILNDISLMV 321
                 ***********************994433344444444444444445555555556655555589999666666666556******************* PP

      OpgC_C 280 lvarlvpagwralra 294
                 +++ l+++ wr+l++
  CTQ27725.1 322 TIYLLLTWCWRPLNW 336
                 ***********9985 PP

>> DUF1624  Protein of unknown function (DUF1624)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  21.8   0.00044       2.6       1     186 [.      27     244 ..      27     268 .. 0.61
   2 ?   -0.0   0.1      0.09   5.4e+02     118     157 ..     249     292 ..     243     299 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00044
     DUF1624   1 RieeiDalRGiAlilMiifHflfdLeffgylavslatsglwvvfarliaslFlfiaGvslvlahskslrw.......rkflkRglkilaaallitaaty 92 
                 R   iD++RGiAl++M++ H+   ++ f++ + + +  gl      + a  F++++G++l +  +  l++            R+ ki+ + ++i +  +
  CTQ27725.1  27 RDLRIDFMRGIALVMMVVAHTE-VMSIFNIFSWERF--GLT-----TGAEGFVILSGFMLGMLNRARLQKavlltvgWGLYLRAWKIYQVNIIIIVTFL 117
                 5668****************85.4788888775544..332.....23568*********988888887778888887778899999999877755555 PP

     DUF1624  93 lllpdsfi.vFG.........................................iLhlialalllallflrlpkalllllallilalglllre....... 142
                 ll    fi +F                                          iL l    lll +lfl                              
  CTQ27725.1 118 LLRYFPFInAFEvthftdrfsgtswslypltpqiketwfniilylqigphqtqILGLYIFLLLLSPLFLG---------------------Mlqkghvy 195
                 5555889999996666666666666666666644444444444444444444444444444444444433.....................23333322 PP

     DUF1624 143 aifdlplllwlglss.....ekfetndYvplfPWfgvvllGialgklly 186
                 ++++++ll+   +++     ++ e +  +pl+ W  ++ lG+ +g +  
  CTQ27725.1 196 PLLGVSLLIYGCWQRwpvrvTPCEFEFAFPLLAWQFIFVLGMCCGWYKA 244
                 2333333333332222222244555566899999999999999986444 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.09
     DUF1624 118 flrlpkalllllallilal..glllrea..ifdlplllwlglss 157
                 f+r p   ++++al+++al   +++++    f +p+ll+ ++ +
  CTQ27725.1 249 FARTPPGKVAVVALVFIALilAFVAQNHtnPFMPPALLMHVIPP 292
                 56666666666666666651133333322234445666655555 PP

>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  36.7   0.00031       1.9       3     261 ..      30     286 ..      28     337 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00031
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxx...xxxxxxxxx..... RF
  Acyl_transf_3   3 ylDllRgiAillVvflHaliayspdagrgspiqasqssqiaflggfgvplFFllSGffla.......amlyrrrglskl...ikrRilrll..... 83 
                     +D +RgiA +++v+ H+ ++   + ++++           f    g   F +lSGf+l        +    +  l +    ++ R+ +++     
     CTQ27725.1  30 RIDFMRGIALVMMVVAHTEVMSIFNIFSWER----------FGLTTGAEGFVILSGFMLGmlnrarlQ----KAVLLTVgwgLYLRAWKIYqvnii 111
                    59************************99985..........9999**************977754431....222222211134444555544432 PP

                    xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxx RF
  Acyl_transf_3  84 iplliwllliilli.alvaghiqanasanvtlfdetkglmfllfefpatghlWfLwal........................fvlylllplllrll 154
                    i + + ll ++++i a+ ++h ++ +                       g +W+L+ l                        ++ly++l+ll +l+
     CTQ27725.1 112 IIVTFLLLRYFPFInAFEVTHFTDRF----------------------SGTSWSLYPLtpqiketwfniilylqigphqtqiLGLYIFLLLLSPLF 185
                    33333333333322022233333333......................344444444444444444444446777799999988888888886666 PP

                    xxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 155 rkvrkshlll.llilllllslvfirhel.fgpatsvgllplpsvlallfflfGalladaddrdrnlsrglkislllsllllalillalfgqtdggg 248
                     +   ++ ++ ll++ ll+  ++ r+   + p  + ++ pl ++   + f++G+ ++ ++ +  ++ r     +++ +l++++ +la+ +q+    
     CTQ27725.1 186 LGMLQKGHVYpLLGVSLLIYGCWQRWPVrVTPCEFEFAFPLLAW--QFIFVLGMCCGWYKAELISFARTPPGKVAVVALVFIALILAFVAQN---- 275
                    65544333330333333333333333332444444444444444..899999*999999998887777666555555555555555555554.... PP

                    xxxxxxxxxxxxx RF
  Acyl_transf_3 249 lvasvliqsasll 261
                       ++    ++ll
     CTQ27725.1 276 --HTNPFMPPALL 286
                    ..23333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2677.97
//
Query:       CTQ27726.1  [L=75]
Description: hypothetical protein CH1034_190209 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-09   37.7   2.6    1.2e-09   37.6   2.6    1.0  1  OpgC_C    OpgC protein


Domain annotation for each model (and alignments):
>> OpgC_C  OpgC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   2.6   6.7e-14   1.2e-09     296     356 ..       8      70 ..       3      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 6.7e-14
      OpgC_C 296 vlrplillGrhsLavFvvgvvlslllq.vllatt.egnlllqllvsvvglalllavAlllewl 356
                 ++++li+lG++sL+ F+++v ++l++  +++++  ++ +++++l+++++l++l+++A ++  +
  CTQ27726.1   8 AGWFLIPLGQRSLYTFILHVYIVLAVSqLVTFDLwRQAWIVNTLIHAAALGVLWLMAKYRVAA 70 
                 589******************9998861555555799999*****************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 639.86
//
Query:       CTQ27727.1  [L=299]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.17   11.7   0.0        0.9    9.4   0.0    2.0  2  Hen1_Lam_C  Hen1 La-motif C-terminal domain


Domain annotation for each model (and alignments):
>> Hen1_Lam_C  Hen1 La-motif C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.069   1.2e+03      18      44 ..      92     118 ..      70     119 .. 0.76
   2 ?    9.4   0.0     5e-05       0.9     102     124 ..     185     209 ..     182     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.069
                 EEEEEEBTTC-HHHHHHHCTT-S-CCC CS
  Hen1_Lam_C  18 avtlnisseeyYldviaekLglkdask 44 
                 +++l+ s  ++++  ++++L ++d+s+
  CTQ27727.1  92 NLSLQYSPYSFWFANVTSRLPVTDTSR 118
                 355677778889999999999999875 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 5e-05
                 BSSEEEEEEEE-S..S-SSEEEE-- CS
  Hen1_Lam_C 102 yGdailasvGytw..ksedleyedv 124
                  Gdai+ +vGy+w  +  dl  +d+
  CTQ27727.1 185 KGDAIMCQVGYSWvpRYYDLASDDI 209
                 59***********666678888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2573.49
//
Query:       CTQ27728.1  [L=404]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-34  120.1   0.0    2.1e-34  119.2   0.0    1.4  1  SpoIIE        Stage II sporulation protein E (SpoIIE)
    7.6e-28   96.9   0.0    1.2e-27   96.3   0.0    1.3  1  Response_reg  Response regulator receiver domain


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.0   2.3e-38   2.1e-34       3     192 ..     193     397 ..     192     398 .. 0.91

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 2.3e-38
                 TEEEEEEEECSSSSHHHHHHHHHH.HHHHHHHHHTTTS.........HHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSSEEEEET CS
      SpoIIE   3 grlalvvgDvvGhGleAalimgll.rsalrelatagle.........paevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpppllvrp 91 
                 ++l+++  Dv+GhG++Aa+++ ++ r+ l+  a + +          paev++ ln ++++d  e + ++T++++v+d+ tg+ ++++aGhp p++v+ 
  CTQ27728.1 193 EHLGFYCVDVSGHGVGAAMMSLAVaRQFLHGRAVERFLfsadnqpasPAEVVQILNGRFCSDEAEIVSYFTLIYGVIDLTTGEGKLCQAGHPTPFIVTV 291
                 6789999************9976525566665555555778888***************9999999********************************* PP

                 TSTEEEEE--SS--TTTSSST-EEEEEEE--TTEEEEEESCCCCSSSHHHHHHCCCHHCHHHHCT.....HCCHHHHHHHHHHH......HTTSSSSS- CS
      SpoIIE  92 dggtklllastglplGilpeadyetaelelepgdtlllyTDGvtEardsdgelfgkerllallasaegesleelldalveelle......lgsgeleDD 184
                 dgg++    s+g+p+G++ ++ + ++++ l+pg++l+l++DG+tE+++ +ge fg+ rl a l+++ +++l +ll ++ ++l +      ++ + ++DD
  CTQ27728.1 292 DGGVR-SVGSGGAPVGLINHLSWADVSFSLAPGERLCLFSDGITECENRSGEQFGEVRLQAWLQDSVTQPLPALLPRFARHLIHwrngdaQETQSMADD 389
                 66665.56799*******************************************************9999*******************988889**** PP

                 EEEEEEEE CS
      SpoIIE 185 itllvlrv 192
                 ++ll++++
  CTQ27728.1 390 VSLLIIER 397
                 *****987 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.0   1.3e-31   1.2e-27       1     111 [.       6     117 ..       6     118 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.3 bits;  conditional E-value: 1.3e-31
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTES CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkagad 95 
                   vliv+D+ + r+ll+++l++ gy  v eae+g +al++l+++ v l++ D++mp+m+Gl l++e+r+++  + +  i+lta+++  d+++++ agad
    CTQ27728.1   6 VLIVEDSLVYRRLLSRMLTQWGY-IVSEAENGVAALAILENQPVSLVISDWEMPEMNGLMLCREVRRRQfgHYVYLILLTAREDPGDLTQGFAAGAD 101
                   8**********************.*****************************************99998899************************ PP

                   EEEESSG-HHHHHHHH CS
  Response_reg  96 dflsKpfdpeeLlkal 111
                   dflsKp++++eL+++l
    CTQ27728.1 102 DFLSKPVEQSELRARL 117
                   *************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3287.63
//
Query:       CTQ27729.1  [L=112]
Description: Anti-anti-sigma factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-12   47.5   0.0    1.3e-12   47.3   0.0    1.0  1  STAS      STAS domain
    1.8e-08   34.6   0.0    2.4e-08   34.2   0.0    1.3  1  STAS_2    STAS domain


Domain annotation for each model (and alignments):
>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   1.5e-16   1.3e-12       2     112 ..       3     101 ..       2     106 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 1.5e-16
                 EEEEECTTEEEEEEEEE.ESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHT CS
        STAS   2 idaeeiegililrldgp.idfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklekt 99 
                 i++e++ +++il+     +d+  a  fk+ + + +ge p           li+d+s+++fiDssG+++L++++k ++  ++e+ l+ ++p +r +++ t
  CTQ27729.1   3 IETERQASVTILTPAVRrLDASVAVAFKSAIAQEIGEAP---------GDLIVDFSEIDFIDSSGLGTLVSLMKMMN-GRGEMTLCALNPGIRNMFTLT 91 
                 6788888888887654449******************96.........*****************************.899****************** PP

                 TCGGCC..SEEES CS
        STAS 100 gffdeveeeklfl 112
                  +++++   ++ +
  CTQ27729.1  92 RMDRIF---RICE 101
                 ****99...5544 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   2.7e-12   2.4e-08       6      80 .]      20      94 ..       7      94 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 2.7e-12
      STAS_2  6 eldldtaaelreqlleal..aagaevvvDlsgvervDsaalalLlalartarargrrlvlrglppalrrlldlyGld 80
                +ld++ a +++++ ++ +  a+g ++ vD+s++ ++Ds++l+ L++l + + +r + ++l +l+p+ r ++ l+++d
  CTQ27729.1 20 RLDASVAVAFKSAIAQEIgeAPG-DLIVDFSEIDFIDSSGLGTLVSLMKMMNGR-GEMTLCALNPGIRNMFTLTRMD 94
                89****************97778.*************************88776.99****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 933.08
//
Query:       CTQ27730.1  [L=156]
Description: putative anti-sigma regulatory factor, serine/threonine protein kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-17   63.2   0.0    2.6e-17   62.9   0.0    1.1  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.091   13.3   0.0       0.15   12.6   0.0    1.3  1  DUF2061      Predicted membrane protein (DUF2061)


Domain annotation for each model (and alignments):
>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   2.9e-21   2.6e-17       1     125 []      12     140 ..      12     140 .. 0.94

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 2.9e-21
  HATPase_c_2   1 isadpehvrtvrevaeavlrraglseelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep..keslk 96 
                  ++a++++++ ++e++++ ++   +++e +  + la+ E  tN++++a +e++e ++ v+++++++++t++++D G+ f++e l++   +e    ++l 
   CTQ27730.1  12 FPAELTSLSPLAEWLAQQMASLPVADEWRFALDLAACETATNIIRYALHEDRESRFGVEFRVADRRVTLRFTDAGETFPAERLAMARGDEHfdVDPLA 109
                  799******************************************************************************99999888878899*** PP

  HATPase_c_2  97 egGrGlalikglvDevey..dgegnvvtmsk 125
                  e+GrGl li + vD +++  ++++n++t+ k
   CTQ27730.1 110 ENGRGLRLILRAVDFFDVemNAGKNITTLMK 140
                  **************88776699999999875 PP

>> DUF2061  Predicted membrane protein (DUF2061)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.7e-05      0.15      24      48 ..      37      61 ..      30      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.7e-05
     DUF2061 24 gslalAgaialvEpvvktvlYyfHE 48
                 ++  A+ +a  E++++++ Y +HE
  CTQ27730.1 37 DEWRFALDLAACETATNIIRYALHE 61
                6899********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1326.67
//
Query:       CTQ27731.1  [L=304]
Description: putative transcriptional regulator (LysR family) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-38  130.3   1.2    6.1e-38  130.3   1.2    1.5  2  LysR_substrate  LysR substrate binding domain
    1.1e-18   66.9   1.2    2.3e-18   65.9   1.2    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.13   12.2   0.0       0.22   11.5   0.0    1.3  1  DUF3322         Uncharacterized protein conserved in bacteria


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.43   2.6e+03     168     197 ..      31      60 ..       7      62 .. 0.59
   2 !  130.3   1.2     1e-41   6.1e-38       2     207 ..      85     290 ..      84     292 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.43
                     TEEEEEESSTTCEEEEEEEEETTCCCHHHH CS
  LysR_substrate 168 rlvalplpepplprelylvyrkgrelspav 197
                      + ++ +++++++    l++r  r+ +p++
      CTQ27731.1  31 PVATAAIKALEVSLGARLLHRTTRHVRPTA 60 
                     344455555566666667777777766665 PP

  == domain 2  score: 130.3 bits;  conditional E-value: 1e-41
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gep 95 
                     g+ +g++r+ +   lar+ll p+l++f+aryP+++ ++ e++  + +dl++eg +D++ir+g+++ds++++rpLa  + + +asp++ Lar g+p
      CTQ27731.1  85 GSISGTIRVDVAGNLARTLLLPALPQFLARYPDITPQIGESE--RDVDLVREG-VDCVIRGGHLPDSEMICRPLAGLQEITCASPNY-LARyGTP 175
                     5789**************************************..*********.*********************************.******* PP

                     ECGGGGCTSEEEEESTTST...HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEE CS
  LysR_substrate  96 vsledLadeplilleegsg...lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylv 186
                      ++e L ++ +i +  + +   l  ++ +  r++++++  +l +++++  +++++ G G+  +p   ++++la+g l   +l+++++   +l+l+
      CTQ27731.1 176 HTIEGLTGHVMIGFVSSRTqrtLPLSFTQDGRQSEVSLPCRLLTSDADVGAEAARLGFGLYQAPLPRLEADLASGALT-EVLADFRPApLPLSLL 269
                     **************87777577888888999999********************************************.8888886666****** PP

                     EETTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 187 yrkgrelspavrafidflrea 207
                     y+++r+ls++v+ fid++++ 
      CTQ27731.1 270 YPSNRQLSARVQVFIDWVTAL 290
                     *****************9875 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   1.2   3.9e-22   2.3e-18       2      59 ..       5      62 ..       4      63 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 3.9e-22
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                + l lfv ++e gsf++AA  Lg+s p ++++ik+LE  lg++L++Rt+r++r+T++G
  CTQ27731.1  5 DTLTLFVRIVERGSFSAAAADLGVSRPVATAAIKALEVSLGARLLHRTTRHVRPTAEG 62
                6799*****************************************************9 PP

>> DUF3322  Uncharacterized protein conserved in bacteria N-term (DUF3322)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.6e-05      0.22      18      58 ..     252     292 ..     242     302 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.6e-05
     DUF3322  18 lrarllgeeafPlrlplkpptaaelaadfdavrdwiaewra 58 
                 l ++l++ + +Pl l+l  p++++l+a+++ + dw++++++
  CTQ27731.1 252 LTEVLADFRPAPLPLSLLYPSNRQLSARVQVFIDWVTALMK 292
                 6788888999****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2553.21
//
Query:       CTQ27732.1  [L=253]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-51  174.0   0.6    4.1e-51  173.8   0.6    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    3.4e-41  140.9   0.2      4e-41  140.6   0.2    1.1  1  adh_short        short chain dehydrogenase
    4.8e-08   33.1   0.2    7.2e-08   32.5   0.2    1.2  1  KR               KR domain
      1e-05   25.2   0.4    8.8e-05   22.1   0.4    2.0  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0014   18.0   0.0     0.0021   17.5   0.0    1.2  1  DUF1776          Fungal family of unknown function (DUF1776)
     0.0043   17.5   0.2       0.14   12.6   0.0    2.1  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
  ------ inclusion threshold ------
      0.034   14.5   0.5       0.44   11.0   0.0    2.5  2  HEAT_2           HEAT repeats
      0.085   12.4   0.3          3    7.4   0.0    2.1  2  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   0.6   1.8e-54   4.1e-51       3     233 ..      14     251 ..      10     252 .. 0.91

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 1.8e-54
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E....EE--TTSHHHHHHHHHHHHHHH..SSEEEEEE-----EGCSS-GGGH- CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v....lecDVtdeeqvealveevvekf..gklDilvnnagiapklkgpflets 91 
                    +g+Gra+++ala++G +vvlt+  + a +++v + +e+lga+ +     +  +   ++  ++++ +  ++  +k+D+lvnnag a      fl+++
    CTQ27732.1  14 SRGLGRATVEALAQRGVNVVLTYKTRLAeANEVVTRVEALGARaIalpfSAGEIDTFDAFVSAFQGALTELgaDKFDYLVNNAGNASG--MGFLNAT 108
                   59***********************99988888888888998853634444555555556666666666667889*************..******* PP

                   HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT.HHH CS
  adh_short_C2  92 reefdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg.fde 187
                   ++efd    + ++s+f l++ +lpl+++gg+ivn+ss   ++v++n + y++ K a+e ltry+A elg++gi+vN+v+pg+i+T+ ++g+ + +++
    CTQ27732.1 109 EAEFDALYRIHVKSVFFLSQKLLPLLADGGRIVNVSSGLTRIVMANRAPYAIMKSAVETLTRYMAFELGSRGITVNCVAPGAIATDFSDGVVRdNPQ 205
                   ***************************************************************************************9997553999 PP

                   HHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 188 lleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   + +++++++ lgr g pe+++ +++ L+sd+ ++++ q + v gG+
    CTQ27732.1 206 VAQAVANMTALGRPGLPEDIGPMIASLLSDDHRWVNAQRIEVSGGM 251
                   *********************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.2   1.8e-44     4e-41       1     190 [.       6     199 ..       6     204 .. 0.93

  Alignments for each domain:
  == domain 1  score: 140.6 bits;  conditional E-value: 1.8e-44
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH.....SSESEEEE---SS--SSG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl.....gkldvLvnNAGitgsgpf 93 
                 k++lvtG+s+G+Gra++++la++G++vv+ ++ + ++++ev++ ++++ga+a+a+++   + +  +a+v++ +  l     +k d LvnNAG +    f
  CTQ27732.1   6 KIALVTGGSRGLGRATVEALAQRGVNVVLtYKTRLAEANEVVTRVEALGARAIALPFSAGEIDTFDAFVSAFQGALtelgaDKFDYLVNNAGNASGMGF 104
                 79***************************999****************99*999988888777777777766666555588899*************** PP

                 GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short  94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                  + +e+e+++++ + +++vf l++ +lp +    +GrIvnvsS  ++  +a+ a+Y+  K av+ ltr +a el ++gi+vn+vaPG+++Td+   +
  CTQ27732.1 105 LNATEAEFDALYRIHVKSVFFLSQKLLPLLA--DGGRIVNVSSGLTRIVMANRAPYAIMKSAVETLTRYMAFELGSRGITVNCVAPGAIATDFSDGV 199
                 *****************************77..99*********************************************************98766 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.2   3.2e-11   7.2e-08       4     173 ..       9     183 ..       7     188 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.2e-11
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS..S---EEEE---------TTT- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee..ppikGvihaAgvlrdklleem 100
                 l+tGG  gLG+++++ la++g + ++    + a+ ++  +++++l a+ +   + a ++   da  ++++ + +e   ++    ++ Ag +    + + 
  CTQ27732.1   9 LVTGGSRGLGRATVEALAQRGVNVVLTYKTRLAEANEVVTRVEALGARAIALPFSAGEIDTFDAFVSAFQGALTELgaDKFDYLVNNAGNASGMGFLNA 107
                 9********************76554444442334444445555555555555556666666666666655555556788899**************** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHH.HHHHTEEEE CS
          KR 101 taedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaNaflDalaeyrr.sqglpavsi 173
                 t+++++++++  vk +  L + l +   +   +v +SS  + + +a +a Ya   + +++l +y + ++g +++++
  CTQ27732.1 108 TEAEFDALYRIHVKSVFFLSQKLLPllADGGRIVNVSSGLTRIVMANRAPYAIMKSAVETLTRYMAfELGSRGITV 183
                 ********************999996677779****************************9999863455666655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.4   3.9e-08   8.8e-05       1     169 [.       8     185 ..       8     190 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.9e-08
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHHHHHHHHHT-SEEEE--S.---HHHHHHSHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrsalerlfkeeqpdavihlAa.vggvaassedpadfi 88 
                 +lVtG++  +G+a+v+al+++g++v+   + + a++++   ++           +  +++   +a+  +f+     a   l+a   ++ +++  +a  +
  CTQ27732.1   8 ALVTGGSRGLGRATVEALAQRGVNVVLTYKTRLAEANEVVTRVealgaraialPFSAGEIDTFDAFVSAFQ----GALTELGAdKFDYLVNNAGNASGM 102
                 59********************9966665554444444444446799999888666666666665555555....456666555555555555544433 PP

                 HHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSS...SSBSTCSTTS--..--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
   Epimerase  89 eknlqgtlnlleaarkagvkrllflsSsevYGkdae...qpkeettltgpl..kpnspYaaaKlageklveayaaqyglnaiilrl 169
                    l+ t   ++a+ + +v + +f+ S  + +  a+   + + ++ lt  +  + + pYa+ K a+e l++++a + g + i++++
  CTQ27732.1 103 -GFLNATEAEFDALYRIHV-KSVFFLSQKLLPLLADggrIVNVSSGLTR-IvmANRAPYAIMKSAVETLTRYMAFELGSRGITVNC 185
                 .355555555778888889.88999999999977774433233333333.247*********************999999999987 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   9.5e-07    0.0021     122     201 ..     118     192 ..     102     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 9.5e-07
     DUF1776 122 erllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnld 201
                  ++ s + ++q+llpll+    +  +i+ v+ +++  + +++ ap a++ sa+++l++ ++ el++ +i v ++  G + 
  CTQ27732.1 118 IHVKSVFFLSQKLLPLLA----DGGRIVNVSSGLT-RIVMANRAPYAIMKSAVETLTRYMAFELGSRGITVNCVAPGAIA 192
                 567788999********9....5789999887776.68899********************************9999873 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   6.1e-05      0.14       8      82 ..      19      97 ..      12     155 .. 0.76
   2 ?    3.4   0.0     0.043        97       3      32 ..     165     203 ..     163     247 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.1e-05
  Glyco_trans_4_4  8 aelaraLaarGheVtvlt....papapgapeleedgvrvhrlpvprrp.spladlaalralrrll.rqrrerpdvvhahsp 82
                     +++++aLa+rG+ V++      +++ ++  ++e+ g+r + lp+++++ +  +  a++ a++++l +  + ++d ++ +  
       CTQ27732.1 19 RATVEALAQRGVNVVLTYktrlAEANEVVTRVEALGARAIALPFSAGEiD--TFDAFVSAFQGALtELGADKFDYLVNNAG 97
                     7889*********9886555543333445568899*********999832..2347999*****99889999998776654 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.043
  Glyco_trans_4_4   3 igryvaelaraLaarGheVtvltpapapg.........a 32 
                      +++ ++ +a +L  rG  V +++p++ +           
       CTQ27732.1 165 VETLTRYMAFELGSRGITVNCVAPGAIATdfsdgvvrdN 203
                      67889999***************7664442332333222 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.46     1e+03      48      62 ..      18      32 ..       7      59 .. 0.61
   2 ?   11.0   0.0   0.00019      0.44      42      81 ..     201     242 ..     188     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.46
      HEAT_2 48 RraaaeaLgaigdpe 62
                 ra +eaL++ g + 
  CTQ27732.1 18 GRATVEALAQRGVNV 32
                466777777766543 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00019
      HEAT_2  42 dedpavRraaae..aLgaigdpealpaLkellddddddvvRe 81 
                  ++p v +a+a+  aLg+ g+pe++    ++l++dd++ v +
  CTQ27732.1 201 RDNPQVAQAVANmtALGRPGLPEDIGPMIASLLSDDHRWVNA 242
                 58999******555***********99999999999987765 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.4     0.026        59       2      49 ..       9      59 ..       8      83 .. 0.73
   2 ?    7.4   0.0    0.0013         3     183     211 ..     222     251 ..     158     252 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.026
                EESSTTSHHHHHHHHHHHHHT-EEEEEES-S...-SHHHHHHHHSTTEEEE CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRdt...kselakslkeaGvelvk 49
                lv+G++  +G++ v+al+++g +v    +      +e+++ +++ G+  ++
  CTQ27732.1  9 LVTGGSRGLGRATVEALAQRGVNVVLTYKTRlaeANEVVTRVEALGARAIA 59
                79999999*************999655444477777888888888887664 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHHHHHH.TTEEEEE-SEE CS
        NmrA 183 eeDiGafvikilkdprkl.kgkriklagnt 211
                  eDiG++++++l+d + + +++ri+++g +
  CTQ27732.1 222 PEDIGPMIASLLSDDHRWvNAQRIEVSGGM 251
                 58************99999******99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1892.73
//
Query:       CTQ27733.1  [L=510]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-10   40.7   4.3    7.2e-10   39.1   2.2    2.7  2  HD        HD domain
     0.0092   15.9   0.2      0.098   12.6   0.0    2.6  3  DUF3361   Domain of unknown function (DUF3361)


Domain annotation for each model (and alignments):
>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   2.2     8e-14   7.2e-10       1     121 [.      57     235 ..      57     236 .. 0.71
   2 ?   -2.1   0.0      0.47   4.3e+03      59      79 ..     391     412 ..     376     457 .. 0.59

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 8e-14
                 HHHHHHHHHHHHHHHHHHHHH......................HHHHHHHHHHHHHTTTTHHHHTS..HHH.........................HHH CS
          HD   1 rleHsleVaklarrlaedlge......................eedrellllaaLlHDiGkgpfgdafekk.........................eee 52 
                 r+eHsl+V++l+ ++ + l +                        + + l+laaL+HDiG+gp++++fe                           e  
  CTQ27733.1  57 RFEHSLGVLHLSSEILNNLRLnairyqkkyddghvfghidqipKHNIQELRLAALMHDIGHGPVSHQFESFmpgkhefsdvlptayhsiidvlskpE-- 153
                 79*****************************************9************************99899877666666655555544433321.. PP

                 CTCCHHHHHHHHHHHHHHHHHHHHH........HHHHHHHHHTTCCHHHHHHHH..H.....HHHCCTSCHHHHHHHHHHHHHH CS
          HD  53 fekflaHekvgaeilrevekrlgld........ledvaklirehheswegkkrp..r.....glaerqlslearivklaDrlaa 121
                   + ++He+ +      +  +l++         +e+v+k+i++  ++  + ++   +      l +  +s+  ++++++D+l +
  CTQ27733.1 154 --QKVEHEQLSLLFSLMIYHDLRKQgkiddeinIENVLKIIEKRYGDQQIIEEIngKatdilPLMTSIISSCPIDADRMDYLLR 235
                 ..2223333333222222222222233345667777777777777777766666551455778888888888888888888876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHHHHHHHHH.HH CS
          HD  59 Hekvgaeilrevekrlgld.le 79 
                 H+++ a i+ ++ k  +   + 
  CTQ27733.1 391 HSVYKANIADKENKAWKSQlTG 412
                 5555555555555555333333 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.71   6.4e+03      53      86 ..      44      79 ..      40      87 .. 0.68
   2 !   12.6   0.0   1.1e-05     0.098      99     151 ..     142     194 ..     132     196 .. 0.94
   3 ?   -0.7   0.0      0.14   1.3e+03      10      41 ..     272     312 ..     269     330 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.71
     DUF3361 53 eFikkiasi.vnks.aadasilqrslaiLesivlns 86
                +F+ k+    v+++ ++   +l+ s +iL+++ ln+
  CTQ27733.1 44 SFLYKVFPSaVHSRfEHSLGVLHLSSEILNNLRLNA 79
                666666644044446666788899999999887775 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.1e-05
     DUF3361  99 lesLiehLqssnqeiqtnalaLlnALllkaddskrkelaetlskkqlrkvilk 151
                  +s+i+ L++++q+++++ l+Ll +L++  d  k+ ++ + ++ +++ k+i k
  CTQ27733.1 142 YHSIIDVLSKPEQKVEHEQLSLLFSLMIYHDLRKQGKIDDEINIENVLKIIEK 194
                 5789*******************************************999976 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.14
     DUF3361  10 dGlkllvkiveegke.........sgeilayaLtafleLmd 41 
                  G++++++++   +          +++  a +L+++ e+m+
  CTQ27733.1 272 SGIDSIAEFIGARSSlfsqvyyhkTNRAFATMLSTLCEIMQ 312
                 57777777776665556666666678888888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.50
# Mc/sec: 3078.39
//
Query:       CTQ27734.1  [L=188]
Description: ThiJ/PfpI family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-51  172.0   0.0      1e-50  171.8   0.0    1.0  1  DJ-1_PfpI      DJ-1/PfpI family
    0.00039   20.2   0.0    0.00049   19.9   0.0    1.2  1  GATase         Glutamine amidotransferase class-I
     0.0045   16.7   0.0      0.024   14.3   0.0    2.0  2  ThiJ_like      ThiJ/PfpI family-like
  ------ inclusion threshold ------
      0.058   13.1   0.1       0.13   12.0   0.1    1.7  1  Peptidase_C26  Peptidase C26
      0.059   13.0   0.0       0.12   12.0   0.0    1.5  1  Catalase_C     C-terminal domain found in long catalases
      0.064   12.8   0.0      0.089   12.4   0.0    1.3  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.8   0.0   3.4e-54     1e-50       1     163 [.       3     183 ..       3     185 .. 0.99

  Alignments for each domain:
  == domain 1  score: 171.8 bits;  conditional E-value: 3.4e-54
                 EEEEEEEETTBEHHHHHHHHHHHHHTTEEEEEEESS................TSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHH CS
   DJ-1_PfpI   1 kkvlvlladgvedvElivpvdvlkragikvdvvsvd................keevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekv 83 
                 kk+l+l++d++ed+E++vp+++l+  g++vd+v++d                +++++++ G+++t++a +  vka++yDalv+pGGra pe+lr ne+v
  CTQ27734.1   3 KKILMLVGDYAEDYETMVPFQALQMIGHQVDAVCPDktagdyvmtaihdfdgAQTYSEKPGHRFTLNADFAAVKAENYDALVIPGGRA-PEYLRLNEEV 100
                 79**************************************************************************************.********** PP

                 HHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTSEE--SGGGHHHHHHTTSEE-SS...SEEEETTEEEESSGGGHHHHHHHHH CS
   DJ-1_PfpI  84 velvkefaekgklvaaICagpqlLaaagvlkgrrvTsypavkdklekagakyvdk...rvvvdgnlvTsrgpgaaiefalell 163
                 ++lv+ f  + k++aa+C+gpqlLaaag+l+gr++++ypa+ ++++ +g +y d    ++ vdgnlvT+ +++a+++++ ++ 
  CTQ27734.1 101 IKLVQAFDAARKPIAAVCHGPQLLAAAGILQGRTCSAYPACAPEVRLSGGHYADIgidQAHVDGNLVTAPAWPAHPQWLAKFA 183
                 *******************************************************999********************99986 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.7e-07   0.00049      35      87 ..      74     127 ..      50     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.7e-07
                 HHHHTHHSTSEEEEEEESSCTT...TTTHHHHHHHHCTSTS-EEEETHHHHHHHHH CS
      GATase  35 eilellknpdgilvsgGpgspg...vegkieaikearenkiPiLGICLGmQllaie 87 
                     +++n+d+++++gG    +    e+ i++++ +  +++Pi  +C G Qlla +
  CTQ27734.1  74 AV--KAENYDALVIPGGRAPEYlrlNEEVIKLVQAFDAARKPIAAVCHGPQLLAAA 127
                 33..479**********77777779999************************9976 PP

>> ThiJ_like  ThiJ/PfpI family-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.38   1.1e+03      10      33 ..      17      40 ..      13      61 .. 0.77
   2 !   14.3   0.0   8.1e-06     0.024      81     142 ..      76     128 ..      44     142 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.38
   ThiJ_like 10 evaipwkvlkdagfsveFvtekgk 33
                e+ +p++ l+  g +v+ v +  +
  CTQ27734.1 17 ETMVPFQALQMIGHQVDAVCPDKT 40
                678899999999999998887644 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 8.1e-06
   ThiJ_like  81 sleeydlvllpGGsdkavrelleserlhsllveylklvkrekepskvlgaicqgvlalafak 142
                 + e+yd++ +pGG+ +     l   rl + +   +klv+  ++ +k ++a+c+g   la+a 
  CTQ27734.1  76 KAENYDALVIPGGRAPEY---L---RLNEEV---IKLVQAFDAARKPIAAVCHGPQLLAAAG 128
                 6689**********9976...2...233322...3344444578999*******99999885 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   4.5e-05      0.13      95     124 ..     101     128 ..      67     140 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.5e-05
  Peptidase_C26  95 laLiraalergvPilgiCrGlqllnvalGG 124
                    ++L++a  ++++Pi ++C G qll+ a  G
     CTQ27734.1 101 IKLVQAFDAARKPIAAVCHGPQLLAAA--G 128
                    689999999***************544..4 PP

>> Catalase_C  C-terminal domain found in long catalases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     4e-05      0.12      47     118 ..      68     130 ..      54     135 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4e-05
  Catalase_C  47 vnrTYstadaveFDaivvadgaeslfsakataasslfpagrplqllldayrhgKpigalGsgaealkaagis 118
                 +n+ +++ +a ++Da+v+ +g          a++ l  ++++++l++   +  Kpi+a+ +g ++l+aagi 
  CTQ27734.1  68 LNADFAAVKAENYDALVIPGGR---------APEYLRLNEEVIKLVQAFDAARKPIAAVCHGPQLLAAAGIL 130
                 67789999*************2.........3456889999***999888899*************999986 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     3e-05     0.089      37      89 ..      77     125 ..      43     134 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
    GATase_3  37 lgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLG 89 
                   e++d++++pGg+  +    l  ++++ + ++++ +a +p+ ++C G q+L 
  CTQ27734.1  77 A-ENYDALVIPGGRAPEY---LRLNEEVIKLVQAFDAARKPIAAVCHGPQLLA 125
                 3.67*********86543...333455888899999999************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1350.66
//
Query:       CTQ27735.1  [L=163]
Description: Type VI secretion protein, VC_A0107 family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-53  180.1   3.5    2.7e-53  179.9   3.5    1.0  1  T6SS_VipA  Type VI secretion system, VipA, VC_A0107 or Hcp2
     0.0085   16.0   0.1      0.013   15.5   0.1    1.4  1  GerD       Spore germination GerD central core domain


Domain annotation for each model (and alignments):
>> T6SS_VipA  Type VI secretion system, VipA, VC_A0107 or Hcp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.9   3.5     3e-57   2.7e-53       2     154 ..       7     157 ..       6     158 .. 0.98

  Alignments for each domain:
  == domain 1  score: 179.9 bits;  conditional E-value: 3e-57
                 -----SSEEEEE--TT--TT------EEEEEEC--SSS..--SS-TTTS--EEE-TTSHHHHHHHHTEEEEEEEE--SSS-S-EEEEEEEE-SGGGGSH CS
   T6SS_VipA   2 srvrkeRvnitYdvetggaeekveLPfkllvlgDfsgkseeekkkleerkfveidkdnfdevlkeikprlalkVentLsedgselavdLkfeslkDFsP 100
                 ++v+++R+n++++++tgga++kveLP+kll +gDfs++  +e+++l+er++++++k+nf++vl+e++p+++l+V+ntL+++g+e +v+L+f+++kDF+P
  CTQ27735.1   7 NEVPRARINLKLSLHTGGAQKKVELPLKLLTIGDFSHG--KENRPLSEREKINVNKNNFNSVLSEFSPEVNLSVPNTLAGNGEEENVRLRFTDIKDFEP 103
                 789***********************************..*********************************************************** PP

                 HHHHCC-HHHHHHHHHHHHHHHHHTTTTTXTTHHHHHHHHHHXXHHHHHHHXXX CS
   T6SS_VipA 101 eavaeqvpeLkkLlelReaLadLkskldnkekleklleevlkdeellekLakel 154
                 e+va+q+p+L+++l++R+ L+dLks+l ++++++k+le++lkd++l+++L++e+
  CTQ27735.1 104 EQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEAILKDPALSQELRDEM 157
                 **************************************************9986 PP

>> GerD  Spore germination GerD central core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.4e-06     0.013      41      80 ..     118     157 ..      71     161 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-06
        GerD  41 smkkenekllkdLmkDpeYqkmlleilkdpemekqllell 80 
                 +m++  ++l  +L+++++++k+l  ilkdp ++++l + +
  CTQ27735.1 118 AMRNLLRDLKSNLLDNATFRKELEAILKDPALSQELRDEM 157
                 567777889999***********************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1275.01
//
Query:       CTQ27736.1  [L=514]
Description: EvpB/family type VI secretion protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-167  556.8   0.0   3.4e-167  556.5   0.0    1.0  1  VipB       Type VI secretion protein, EvpB/VC_A0108, tail she
  ------ inclusion threshold ------
      0.061   12.5   0.1       0.17   11.0   0.1    1.7  2  PaaA_PaaC  Phenylacetic acid catabolic protein


Domain annotation for each model (and alignments):
>> VipB  Type VI secretion protein, EvpB/VC_A0108, tail sheath
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  556.5   0.0  3.8e-171  3.4e-167       2     422 .]      90     510 ..      89     510 .. 0.99

  Alignments for each domain:
  == domain 1  score: 556.5 bits;  conditional E-value: 3.8e-171
        VipB   2 kliaeidkklseqlnailhheefqkLEasWrglkylveetetseklkikvlnvskeellkdlekavefdqSalfkkvYeeeygtfGGePfgaligdyef 100
                 + iae+d ++s+ql+a++hh+efq++E+ Wrglk+lv++t+ ++++k ++l+v k++l++d+e+a+e+ qS l+ + Y++ey+t+GGeP+g +i  yef
  CTQ27736.1  90 HHIAELDFQISRQLDAVMHHQEFQQVESLWRGLKQLVDNTDYRQNVKTEILDVAKDDLRQDFEDAPELIQSGLYWHTYTAEYDTPGGEPIGSVISAYEF 188
                 78************************************************************************************************* PP

        VipB 101 skspedielLeklakvaaaahaPfiaaaspelfglesfeelsklkdlkkifeskeyakwrslresedaryvgLtlprvllRlpYgaktkpveefnfeEe 199
                 ++sp+d++lL+++++v+aaah+Pfi a+ p +f  e++ee++ +kd+ ++f+++ey++w+++re++dary+gL++prvl RlpYg++t pv++fn+ E+
  CTQ27736.1 189 DASPQDVALLRNISRVSAAAHMPFIGAVGPAFFLKETMEEVAAIKDIGNYFDRAEYIRWKAFRETDDARYIGLVMPRVLGRLPYGPDTVPVRSFNYVEQ 287
                 *************************************************************************************************** PP

        VipB 200 .keedkekylwgnaayalatrltraFakygwcaairGvesgGlvenlpvhtfetdegevelklptevaitdrrekelaelGfiplvhrkntdkaaffsa 297
                  k+ d+ekylw++aa+ +a++++++F ++gwc +irG+++gG+v++lp+h ++   +++++k+p ev+i ++re e+a+lGfipl+++kn d+a+ffsa
  CTQ27736.1 288 vKGPDHEKYLWTSAAFSFASNMVKSFVNNGWCVQIRGPQAGGAVKDLPIHLYDL-GTGNQVKIPSEVMIPETREFEFASLGFIPLSYYKNRDYACFFSA 385
                 99****************************************************.88899*************************************** PP

        VipB 298 qsvqkpkkyeskeaeanarlsaqLpyilavsRlahYlKvivRdkiGsfkeaeelereLneWlsqYvtenenaseevkaryPLreakveVeevpgkpGay 396
                 +s+qkp+ y++ +a+an+r++a+Lpyi+++sR+ahYlK+i+R++iG++k+++ le eLn+W+++ vte++++ +e++a++PLr+a+v Ve+++++pG +
  CTQ27736.1 386 NSAQKPALYDTADATANSRINARLPYIFLLSRIAHYLKMIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDASVVVEDIEDNPGFF 484
                 *************************************************************************************************** PP

        VipB 397 raklslrPhfqleeltvslrLvaelp 422
                 r+kl+  Phfq+e+++v+l+Lv+++p
  CTQ27736.1 485 RVKLYAVPHFQVEGMDVNLSLVSQMP 510
                 ***********************986 PP

>> PaaA_PaaC  Phenylacetic acid catabolic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   1.9e-05      0.17     171     211 ..     114     154 ..     104     162 .. 0.91
   2 ?   -4.1   0.0      0.77   6.9e+03     112     132 ..     238     258 ..     235     261 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.9e-05
                 HHHHHGGGGGGGG---HHHHHHHHTTSS--GGGGHHHHHHH CS
   PaaA_PaaC 171 AlnrlwpyvlelfgpddaeealaekgkavdndeLrqkfeak 211
                  ++ lw+ +++l++++d  ++++++++ v +d+Lrq+fe++
  CTQ27736.1 114 QVESLWRGLKQLVDNTDYRQNVKTEILDVAKDDLRQDFEDA 154
                 5899**********************************986 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 0.77
                 HHHHHHHHHHHHHTT-SSHHH CS
   PaaA_PaaC 112 lvdaaaiilleaLkrssygpl 132
                  +d+a++i+++a +++ ++++
  CTQ27736.1 238 YFDRAEYIRWKAFRETDDARY 258
                 589999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 4153.72
//
Query:       CTQ27737.1  [L=447]
Description: Type VI secretion protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.2e-138  459.9   6.3   8.1e-138  459.7   6.3    1.0  1  T6SS_VasE  Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ,


Domain annotation for each model (and alignments):
>> T6SS_VasE  Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  459.7   6.3  4.5e-142  8.1e-138       1     428 []      19     444 ..      19     444 .. 0.98

  Alignments for each domain:
  == domain 1  score: 459.7 bits;  conditional E-value: 4.5e-142
   T6SS_VasE   1 HFQqqdrylehllrerlralspyaWGvseleldeeaLalgklalesasgifpDGtlfdapendplPeplelpeeeetknltvyLalplrragganvsee 99 
                 HFQqq +y +++++ ++r+  +++WGv e++++ e+L+lg+l+ ++++++f+DGt++d++++d lP++l+l+ +  + + +++Lalpl++a+g+n+ + 
  CTQ27737.1  19 HFQQQAAYAAWTAEVIARMGLNHPWGVVEATFEPEMLKLGRLQAHRLQVRFQDGTMIDTDNADALPSALSLDGA--SGEAVIVLALPLMQANGSNCLK- 114
                 ************************************************************************97..9********************5. PP

   T6SS_VasE 100 eesaa.aaaRyraeeeevrDlnsegqeeaevqlarlnlrLllesedtgdylllpvarikedrdgkveldesFiPpclslsaspllksllrellgllkar 197
                 +e+ a + aR+r+++++vr+++  g++++++++ +++l+L+++++d++dyl++p++r+++d++g + +de+F+Pp+l+++ s++l++ l++ll +l+ar
  CTQ27737.1 115 PEEVAeRPARFRQRWRDVRNQF--GDDTRQIAVIQPELTLRFAHQDNSDYLTCPLVRLQRDSQGAWLIDETFLPPLLQIQGSRWLATQLEQLLIQLRAR 211
                 55555489**************..9999*********************************************************************** PP

   T6SS_VasE 198 aeala..krerasqgagfgvadvadfllLqllnraepllrhlleapklhPerlYeellelaGeLstFseesrrprelpaYdHddlaasFapleaelrel 294
                  ++l+  +re+++++a+f+vadv+ f+lL++ln+aep+l ++l+ ++  PerlY el++laG+L+tFs + ++++++p Y+Hd+l+a+F pl+++l++l
  CTQ27737.1 212 LTRLMamRRESNERMADFAVADVSLFWLLNALNSAEPVLGYFLRYRQSPPERLYPELARLAGSLLTFSLT-HQANAVPFYQHDQLNAVFPPLFDLLSDL 309
                 **********************************************************************.99************************** PP

   T6SS_VasE 295 Lsavleqravaiple.erkdglyvarldderlleearfvLaVradlpaeelrerfpaqaKvgsvekirelvnsalpGiplrplpvaPrqipyragyvYF 392
                 L+a+l++r+vai le + + ++++arl+d+rl+e+a+++L+Vr+++p ++l+e+fp+q+Kvgs+++++ +vns+  G+pl+pl ++P++ip+r +++YF
  CTQ27737.1 310 LEASLPSRVVAIALEhDVRLHFWQARLHDARLREGADYYLSVRSSVPVAQLQEQFPRQCKVGSPDHVKAIVNSSRTGVPLTPLRHVPAAIPLRLENQYF 408
                 ***************88999******************************************************************************* PP

   T6SS_VasE 393 eLdkkgelwkqllksgaialhvpgefpdlelelwav 428
                 +Ld +++l +++l+sg+++++vpg + ++elel+av
  CTQ27737.1 409 SLDVSHPLATEMLQSGTCMFYVPGMLGEPELELFAV 444
                 **********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3225.97
//
Query:       CTQ27738.1  [L=229]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-35  122.7   0.2    1.8e-35  122.6   0.2    1.0  1  DotU      Type VI secretion system protein DotU


Domain annotation for each model (and alignments):
>> DotU  Type VI secretion system protein DotU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   0.2   9.9e-40   1.8e-35       2     205 .]      14     215 ..      13     215 .. 0.89

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 9.9e-40
        DotU   2 Lldaarpllllvarlresas..epdvealrerlveelrafeqrlkaagysaediedaryalcaliDEavlntpwgers..eWarepLqvrffnetqgGe 96 
                 +++++++++l v++lr++++  +++  +l++r+++++++++++lka+g+++++++++  a+cal+DEav     + ++  +W   pLq +f ++ ++G+
  CTQ27738.1  14 IDALLQNTWLQVISLRHGPQfrDEEGYTLWQRCIADVERVQHELKASGLDDASCQHILTAQCALLDEAVKGRGVEDEAclQWYDIPLQGHFLGTMDAGD 112
                 6799*****************************************************************77777666699******************* PP

        DotU  97 kfferlerlledpaenldlLevyylcLaLGFeGryrleadgeeelealrqrlyeeirrlrgeaeealsphwqagdeaarrllrrelplwvilalallvl 195
                  ++er++ +l++pa+nl++ ++++++++LGF G +r   d   e+ +l+++l e++    + +++a +p    ++ a+  ++   +p+ v ++l+++v+
  CTQ27738.1 113 TLCERMRDVLREPAPNLAVVTCFQRVMLLGFIGSFRSLHD--PERLKLVNALGERVP---PFQRPATAPVLV-ESRAGLGISGWLAPWPVRIGLSVVVV 205
                 ************************************9955..4899***********...344444455544.4444555544456677********** PP

        DotU 196 lllflglsyl 205
                 l+l++gl+++
  CTQ27738.1 206 LALWWGLNHW 215
                 *******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1724.22
//
Query:       CTQ27739.1  [L=568]
Description: putative outer membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-16   60.8   0.0    2.6e-16   59.8   0.0    1.5  1  OmpA      OmpA family
    0.00082   19.1   6.3      0.019   14.7   1.8    2.6  2  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   2.8e-20   2.6e-16       2      95 .]     439     534 ..     438     534 .. 0.88

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 2.8e-20
                 B-TTS--B-GGGHHHHHHHHHHHH.S-S--EEEEE---S---HHHHHHHHHHHHHHHHHHHHH.TTSSGGGEEEEE-TT--------------EE. CS
        OmpA   2 FapgsseLtpkaksaldkiaellk.kpeqkitveGhtdaagseernweLSqkRAeaVanylqn.egvppsrisvsgyGaerpitanntaekkarnr 95 
                 F++g+  L+p + + l +    +k +p   i+v Ghtd+ g e++n+ LS kRAe+V++++ +   vp s + v+gyG++rpi++n+t+e++a nr
  CTQ27739.1 439 FDTGKWVLKPGSTKRLVSSLMDIKaRPGWLIVVAGHTDSVGEEKANQLLSLKRAESVRDWMRDtGDVPDSCFAVQGYGESRPIATNDTPEGRALNR 534
                 9999999*9888877775555555366666*********************************555***************************997 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   1.8   2.1e-06     0.019       6      70 ..       8      75 ..       3     119 .. 0.84
   2 !    6.1   0.2   0.00089         8      26      57 ..     306     343 ..     246     371 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.1e-06
     DUF4131  6 alvllalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqlles.....gqevi 70
                 l l+a+ll +l++ll+l    pr+  +l+ll+ l+l+ + + + ++++++n  s+l ++     +q+v+
  CTQ27739.1  8 GLALWASLLSALVCLLFLP--VPRWGAWLILLVTLALIIGIWRIASRRTGRNVASTLDPLpegayRQPVV 75
                5789999999999999998..899999*****99999999999999999998888777766666644444 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.00089
     DUF4131  26 r......rprrrvllllllllllallgfalrapqpnan 57 
                         pr r + ++l+++ la++ ++l++ ++n++
  CTQ27739.1 306 LpagrglTPRGRAWRAALAIFTLAAVAALLSSGWNNRQ 343
                 1445555899999*************999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4055.54
//
Query:       CTQ27740.1  [L=168]
Description: Type VI secretion system effector, Hcp1 family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-37  127.4   0.1      5e-37  127.2   0.1    1.0  1  T6SS_HCP       Type VI secretion system effector, Hcp
  ------ inclusion threshold ------
      0.076   13.0   0.2       0.12   12.4   0.2    1.3  1  Inhibitor_I24  PinA peptidase inhibitor


Domain annotation for each model (and alignments):
>> T6SS_HCP  Type VI secretion system effector, Hcp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.1   5.6e-41     5e-37       1     129 []      11     151 ..      11     151 .. 0.94

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 5.6e-41
                 EEEECC.....ES-----SSSTTSEEEEEEEEEEEE-SS--TTSBCCC....EEEEEEEEEEESSTTHHHHHHHHHHT--EEEEEEEEE-TT.-TTS-- CS
    T6SS_HCP   1 ylkieg.....ikGestdkghedeievlsfshgvsqprsasagsgsgaragkvehseltitkeiDkaspkLlkalakgehlkevelsvyras.ggkeee 93 
                 yl++++     ikG+++ +++e++iev + +h++  p+++++g+ +g+r     h+++ +tkeiD++sp+L+ka+++g++lk++e+++yr++ +g+e+e
  CTQ27740.1  11 YLWLKDdggadIKGSVDVQDREGSIEVVAQEHNLYIPTDNNTGKLTGTR----IHTPFLFTKEIDSSSPYLYKAVTTGQTLKSAEFKWYRINdAGQEVE 105
                 78888778999*************************************9....9**************************************9****** PP

                 -ECEEECCEEEEEEEEETS...........S-EEEEEEEECCEEEEE CS
    T6SS_HCP  94 yltitLenvlissisvsae...........lpleevslsYakieweY 129
                 y++++Lenv+++++++  +           ++le+++l+Y+ki+w+Y
  CTQ27740.1 106 YFNTKLENVKVVKVNPL-MhdiknpayekhNHLEQIELRYEKITWTY 151
                 *****************.4445566667779***************9 PP

>> Inhibitor_I24  PinA peptidase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   1.3e-05      0.12       4      72 ..      93     163 ..      90     167 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.3e-05
  Inhibitor_I24   4 kwfrinradtglcnywpelsagtvfkvrelvkeced.diepdtgiieielsdgkiiniy.dkpitywclwn 72 
                    kw+rin a   +  +  +l    v+kv  l+++ ++   e    + +iel   ki   y d  i +   wn
     CTQ27740.1  93 KWYRINDAGQEVEYFNTKLENVKVVKVNPLMHDIKNpAYEKHNHLEQIELRYEKITWTYkDGNIIHSDSWN 163
                    9**********999999****************98725688888999********9888455677777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1309.71
//
Query:       CTQ27741.1  [L=884]
Description: Protein ClpV1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-39  134.4   0.0    2.7e-38  131.8   0.0    2.2  2  AAA_2            AAA domain (Cdc48 subfamily)
    9.9e-31  105.8   0.0    2.1e-30  104.7   0.0    1.6  1  AAA_lid_9        AAA lid domain
    3.2e-20   72.9   0.0    1.4e-09   38.5   0.0    2.8  2  AAA              ATPase family associated with various cellul
      5e-15   55.7   0.2    5.3e-10   39.4   0.0    3.0  2  AAA_5            AAA domain (dynein-related subfamily)
    3.4e-13   50.3  14.9    6.9e-07   29.8   0.1    6.8  6  AAA_16           AAA ATPase domain
    4.9e-13   48.9   0.0    3.3e-12   46.3   0.0    2.4  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    3.4e-09   37.1   1.5     0.0069   16.7   0.0    4.8  4  AAA_22           AAA domain
      5e-08   32.8   3.9      0.043   13.4   0.0    4.4  4  AAA_25           AAA domain
    8.3e-06   25.8   0.3     0.0016   18.4   0.0    3.4  2  NACHT            NACHT domain
    9.8e-06   25.4   0.2       0.11   12.2   0.0    2.5  2  IstB_IS21        IstB-like ATP binding protein
      1e-05   25.6   0.0       0.53   10.2   0.0    3.5  3  ATPase_2         ATPase domain predominantly from Archaea
    1.3e-05   24.8   0.0      0.058   12.9   0.0    2.4  2  AAA_7            P-loop containing dynein motor region
    2.2e-05   24.2   0.0    0.00077   19.2   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
    4.1e-05   23.6   0.4      0.012   15.7   0.1    2.9  2  Clp_N            Clp amino terminal domain, pathogenicity isl
    7.2e-05   22.3   0.0        1.5    8.2   0.0    3.5  3  TniB             Bacterial TniB protein
    0.00014   21.6   0.0      0.041   13.6   0.0    2.9  3  AAA_24           AAA domain
    0.00014   22.4   0.0       0.14   12.7   0.0    3.3  3  AAA_23           AAA domain
    0.00025   20.4   0.0       0.14   11.5   0.0    2.4  2  Zeta_toxin       Zeta toxin
    0.00056   20.1   0.2        1.5    9.0   0.0    3.3  3  AAA_33           AAA domain
    0.00074   19.3   0.6        2.3    7.9   0.1    3.4  2  AAA_30           AAA domain
     0.0012   19.2   0.0        4.8    7.6   0.0    3.4  2  RNA_helicase     RNA helicase
     0.0013   18.8   0.0        0.2   11.7   0.0    3.1  3  ResIII           Type III restriction enzyme, res subunit
     0.0046   17.5   0.4        1.9    9.0   0.1    2.7  2  AAA_18           AAA domain
     0.0057   16.4   0.1        1.9    8.3   0.1    2.6  2  AAA_29           P-loop containing region of AAA domain
     0.0058   16.7   0.0        3.4    7.7   0.0    2.5  2  AAA_14           AAA domain
     0.0074   16.6   0.2        4.1    7.6   0.1    3.0  2  AAA_28           AAA domain
  ------ inclusion threshold ------
      0.011   14.9   0.1       0.31   10.2   0.0    2.4  2  TIP49            TIP49 P-loop domain
      0.011   15.7   0.1        5.6    7.0   0.0    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.013   15.4   0.3        1.6    8.6   0.0    3.1  3  RsgA_GTPase      RsgA GTPase
      0.016   15.6   2.1        8.6    6.7   0.1    3.4  2  AAA_19           AAA domain
      0.017   14.5   0.4         14    5.0   0.0    3.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.022   14.4   0.1       0.81    9.3   0.1    2.3  2  SRP54            SRP54-type protein, GTPase domain
      0.027   13.6   0.0          1    8.5   0.0    2.6  2  DUF815           Protein of unknown function (DUF815)
      0.031   14.5   0.0        3.8    7.7   0.0    2.4  2  Roc              Ras of Complex, Roc, domain of DAPkinase
      0.031   14.8   0.8         33    5.0   0.0    3.5  3  ABC_tran         ABC transporter
      0.041   13.3   0.1        2.2    7.7   0.2    2.5  2  PhoH             PhoH-like protein
      0.047   12.7   0.0       0.14   11.1   0.0    1.7  2  AAA_6            Hydrolytic ATP binding site of dynein motor 
      0.089   12.6   0.0        1.3    8.7   0.0    2.2  2  AAA_11           AAA domain
        0.1   12.5   0.0        5.1    7.0   0.0    2.6  2  Rad17            Rad17 P-loop domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       2.6   1.2e+03       5      24 ..     236     255 ..     232     274 .. 0.83
   2 !  131.8   0.0   5.9e-41   2.7e-38       2     170 ..     610     775 ..     609     776 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 2.6
                 -EEEE--TTSSHHHHHHHHH CS
       AAA_2   5 silllgptgvGktelakala 24 
                 + +l+g+ gvGkt l + la
  CTQ27741.1 236 NPILVGEPGVGKTALVEGLA 255
                 56789999******999887 PP

  == domain 2  score: 131.8 bits;  conditional E-value: 5.9e-41
                 ----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG--------- CS
       AAA_2   2 piisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessga 88 
                 p++ +ll+gp+g+Gkte+a ala+ lf + ek+li+++ se++e     h+vs+l+g+ppgyvg+ +gG            +vllDE++K+h+      
  CTQ27741.1 610 PQGVFLLVGPSGTGKTETALALADALF-GGEKALITINLSEYQE----PHTVSQLKGSPPGYVGYGQGGilteavrkrpysVVLLDEVEKAHR------ 697
                 6789***********************.9***************....*********************************************...... PP

                 ----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-S.TTTTSGGG--HHHHHHTT--HHHHTT--E CS
       AAA_2  89 dvSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrsk.eeeeekkkeeveeelkkglipEllgRlpe 170
                      +V+++++q+++ g+++d +gr++d++n++++mt ++gs+   +   ++ +++e++ +e ++  l+ +++p ll R++ 
  CTQ27741.1 698 -----DVMNLFYQVFDRGVMRDGEGREIDFRNTVILMTANLGSDLLMQLLDEQpQASESDLHELLRPVLRGHFQPALLARFQT 775
                 .....***************************************9999766667999***********************985 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   0.0   4.6e-33   2.1e-30       2      92 ..     378     468 ..     377     483 .. 0.93

  Alignments for each domain:
  == domain 1  score: 104.7 bits;  conditional E-value: 4.6e-33
   AAA_lid_9   2 eeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekee 92 
                  ++++ +Lrglk++y +hHgv+i+d+a++aav+lS+rY+++r+lPdkA+DllD+a+ar+r++ ++ pe l++++++l++l  ek+al ++ 
  CTQ27741.1 378 DDTACLMLRGLKSRYADHHGVHITDDAVRAAVTLSRRYLTGRQLPDKAVDLLDTASARLRMSLDTVPEPLTRMKAQLTALAMEKQALLEDI 468
                 578999*******************************************************************************998775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0     3e-12   1.4e-09       2     110 ..     238     350 ..     237     372 .. 0.72
   2 !   31.3   0.0   4.9e-10   2.2e-07       2     114 ..     615     736 ..     614     748 .. 0.79

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 3e-12
                 EEESSTTSSHHHHHHHHHHHH............THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel............gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 +l+G pG+GKT+l++ +a  +            +v+ l + + +    + ge e+++++++++++++ +p+ lfiDE++ ++++    ++  + +++n 
  CTQ27741.1 238 ILVGEPGVGKTALVEGLALRIaegnvpdalkpvSVRTLDLGLLQAGAGVKGEFEQRLKNIIEAVQQSPSPVLLFIDEAHTIIGAG---NQAGGADAANL 333
                 69****************99644433333332235555555555555599***********998877789**************9...77788888999 PP

                 HHHHHHHTTTSSSTEEEEEEES CS
         AAA  89 Llteldgvkkkeskvivigatn 110
                 L ++l + +        i+at+
  CTQ27741.1 334 LKPALARGEL-----RTIAATT 350
                 9888888877.....3555554 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 4.9e-10
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeer 84 
                 ll+Gp GtGKT +a a+a  l   +  +++i++se  +             yvg ++  i   ++ea +k+ p s++++DE+++ +++           
  CTQ27741.1 615 LLVGPSGTGKTETALALADALfggEKALITINLSEYQEPhtvsqlkgsppgYVGYGQGGI---LTEAVRKR-PySVVLLDEVEKAHRDV---------- 699
                 9*******************9765477899999999855788899999999999888765...66666666.77***********8777.......... PP

                 HHHHHHHHHHHTTTS........SSTEEEEEEESSGGG CS
         AAA  85 vvnqLlteldgvkkk........eskvivigatnrpdk 114
                  +n +++++d+   +         +++++++++n  ++
  CTQ27741.1 700 -MNLFYQVFDRGVMRdgegreidFRNTVILMTANLGSD 736
                 .9999999998877778888888555777788887433 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   0.00017     0.076       3      23 ..     238     258 ..     236     368 .. 0.87
   2 !   39.4   0.0   1.2e-12   5.3e-10       2     123 ..     614     734 ..     613     748 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00017
                 EEE--SSSSHHHHHHHGGGGB CS
       AAA_5   3 lLvGppGtgKselaerlaaal 23 
                 +LvG+pG+gK+ l+e la ++
  CTQ27741.1 238 ILVGEPGVGKTALVEGLALRI 258
                 8**************999887 PP

  == domain 2  score: 39.4 bits;  conditional E-value: 1.2e-12
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--...........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreik..ngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerr 93 
                 +lLvGp+GtgK+e a  la al   ++ + +++l+++ ++ ++ +    +  +     + ++l++a+r    ++++lDEve+a+++v+n + +++++  
  CTQ27741.1 614 FLLVGPSGTGKTETALALADALfggEKALITINLSEYQEPHTVSQLKG-SppGYVGYGQGGILTEAVRkrPYSVVLLDEVEKAHRDVMNLFYQVFDRGV 711
                 69*********************9777777888888776666655444.344666777889999999988889************************** PP

                 EE..-SSSEEE---......-EEEEEESS- CS
       AAA_5  94 llleeggelvkaknddllerfrviatanpl 123
                 ++ +  g++++++n      + +++tan  
  CTQ27741.1 712 MR-DGEGREIDFRN------TVILMTANLG 734
                 **.55556667777......6777887765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.1   1.5e-09   6.9e-07       2      51 ..     215     261 ..     214     346 .. 0.70
   2 ?   -1.3   0.6       5.3   2.5e+03     135     160 ..     478     512 ..     388     519 .. 0.57
   3 ?   -0.2   0.0       2.5   1.2e+03       5      25 ..     519     539 ..     515     542 .. 0.87
   4 !   17.9   0.1   6.8e-06    0.0031       1      49 [.     582     636 ..     582     659 .. 0.87
   5 ?    1.5   0.0      0.74   3.4e+02     134     161 ..     681     709 ..     673     720 .. 0.83
   6 ?   -0.7   0.1       3.5   1.6e+03      81     107 ..     737     785 ..     713     864 .. 0.50

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.5e-09
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 ++GR+ e++q+ ++l+r r++ p   +l+Ge+GvGK++lv+ l+ ++ + 
  CTQ27741.1 215 VFGRDTEIRQMVDILSRRRKNNP---ILVGEPGVGKTALVEGLALRIAEG 261
                 79**************9999877...89************7777544433 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 5.3
      AAA_16 135 r.........plvlvlDdlqwadeaslqllaaLlr 160
                 r          l+l lD l+    + lql +aLl+
  CTQ27741.1 478 RladieqeeiRLILALDTLETQYGQELQLTEALLA 512
                 13333333336889999888877788888777776 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 2.5
      AAA_16   5 ReeeleqLlsalervrsgrpe 25 
                 R++e++ L++al +v +g p 
  CTQ27741.1 519 RQAEINDLQNALIAVQQGNPL 539
                 99**************99984 PP

  == domain 4  score: 17.9 bits;  conditional E-value: 6.8e-06
      AAA_16   1 rlvGReeeleqLlsalervrsgrp......elvllsGesGvGKsslvrellrale 49 
                 r+vG e+ l+++++ l+++++g +      ++ ll+G+sG+GK+  + +l++al 
  CTQ27741.1 582 RVVGQEAALSAIARRLRAAKTGLTpengpqGVFLLVGPSGTGKTETALALADALF 636
                 589**************9999998999999**************99999988765 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.74
      AAA_16 134 erp.lvlvlDdlqwadeaslqllaaLlrl 161
                 +rp  v++lD++++a  + ++l+++ +++
  CTQ27741.1 681 KRPySVVLLDEVEKAHRDVMNLFYQVFDR 709
                 45558*****************9998886 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 3.5
      AAA_16  81 llrqlldeaesaeleawrekleeala......................a 107
                 ll qllde+ +a+ ++ +e l+ +l+                      a
  CTQ27741.1 737 LLMQLLDEQPQASESDLHELLRPVLRghfqpallarfqtviyrplpaaA 785
                 5555555533333333333333333333333333333333333332330 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   7.2e-15   3.3e-12       3      74 ..     783     855 ..     781     862 .. 0.92

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 7.2e-15
                    HHHHHHHHHHHHHHHHHHSCT.TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSS CS
  ClpB_D2-small   3 keelkkIvdlalkklekrlke.rgvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelk 74 
                     ++l+ Iv ++l ++++rl+   g++ ++++++ dal e++  p++GAR+++++++++i+++l++++ls+  +
     CTQ27741.1 783 AAALRAIVGMKLGQVSQRLAChYGITTTLSESLFDALTEACLLPDTGARNVDSLLNQQILPALSQQLLSHMAA 855
                    6789***************98799********************************************99855 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       6.5     3e+03      55     117 ..      64     149 ..      39     156 .. 0.59
   2 !   16.7   0.0   1.5e-05    0.0069       4     105 ..     233     323 ..     230     346 .. 0.65
   3 !   13.2   0.0   0.00018     0.081       4      29 ..     610     635 ..     607     663 .. 0.81
   4 ?    1.2   0.0      0.87     4e+02      82     117 ..     675     708 ..     672     730 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 6.5
      AAA_22  55 dllrellralglelka...erlsseellealeqalrarav.........ielliiDEaqhlr...s........eealeeLrslln 117
                  l+++ll+ l+ +  +   +++ s++ l+++++a+  ++          + l+ + E q+l+            +++le Lr ll+
  CTQ27741.1  64 ALWQDLLNWLDKQPRSvrhRPQLSDHTLRLMQEAWLIASLsgeaqirsvHLLMALVEKQNLIqcdGlwplltlgQRQLERLRPLLD 149
                 45555555555555555544555555556666666655555555555555555555666655443133344455666666666665 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.5e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl.lrellralglelkaerlsseellealeqalraravielliiDEaq 101
                 +++  +++Ge+G+GKT l++ l+ +            + v  ++ ++ s ++l l  l    g++++     +++l + + +a+++   ++ll iDEa+
  CTQ27741.1 233 RKNNPILVGEPGVGKTALVEGLALRIA---------EGNV-PDALKPVSVRTLdLGLLQAGAGVKGEF----EQRLKN-IIEAVQQSPSPVLLFIDEAH 316
                 667779******************983.........2222.245555566666455666666665555....444444.4444444444599******* PP

      AAA_22 102 hlr...s 105
                  ++   +
  CTQ27741.1 317 TIIgagN 323
                 9865541 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 0.00018
      AAA_22   4 tagilvvtGesGtGKTtllrrlleql 29 
                  +g+ +++G+sGtGKT ++  l++ l
  CTQ27741.1 610 PQGVFLLVGPSGTGKTETALALADAL 635
                 58999**************9999887 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.87
      AAA_22  82 leqalraravielliiDEaqhlrseealeeLrslln 117
                 l++a+r+r   +++++DE+++  + ++++ + + ++
  CTQ27741.1 675 LTEAVRKRPY-SVVLLDEVEKA-HRDVMNLFYQVFD 708
                 5677788888.9*********9.9999998877766 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   9.4e-05     0.043      37      65 ..     238     265 ..     218     276 .. 0.83
   2 ?    4.6   0.0     0.046        21     106     171 ..     270     336 ..     262     348 .. 0.73
   3 ?   -2.8   0.1       8.6     4e+03      80     134 ..     359     406 ..     358     417 .. 0.63
   4 !   12.9   0.1   0.00013      0.06      33      64 ..     611     642 ..     583     658 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.4e-05
      AAA_25  37 llaGapgtGKttlaldlalavatGkpwlg 65 
                 +l+G pg+GKt+l+  lal +a+G  +++
  CTQ27741.1 238 ILVGEPGVGKTALVEGLALRIAEGN-VPD 265
                 89********************998.555 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.046
      AAA_25 106 ldlagveslpLfakdrggtl.ltadvdaleaaieevegvrlvviDplsralgg.densnsdvgalvea 171
                 +++ +  +l L+++++g +   ++ ++++++a+++ + ++l+ iD    + g+ +    +d++ l+++
  CTQ27741.1 270 VSVRTL-DLGLLQAGAGVKGeFEQRLKNIIEAVQQSPSPVLLFIDEAHTIIGAgNQAGGADAANLLKP 336
                 555443.55566666555557889999**********************9999444444666666665 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 8.6
      AAA_25  80 EdsedelrrRlravgealrddarllvldlagveslpLfakdrggtlltadvdale 134
                 E ++  l+rR++ v  +  +d++ + l l g   l  +++d++g  +t d   ++
  CTQ27741.1 359 ERDA-ALERRFQMVKVDE-PDDDTACLMLRG---LKSRYADHHGVHITDDA--VR 406
                 5555.7899999888774.445554554544...56668888888877765..33 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 0.00013
      AAA_25  33 gelallaGapgtGKttlaldlalavatGkpwl 64 
                 +++ ll+G++gtGKt  al la a+  G++ l
  CTQ27741.1 611 QGVFLLVGPSGTGKTETALALADALFGGEKAL 642
                 5789********************99998765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.4e-06    0.0016       4      41 ..     238     271 ..     236     375 .. 0.70
   2 ?    3.4   0.0      0.14        66       3      27 ..     614     638 ..     612     660 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.4e-06
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEE CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpqgafklvFfls 41 
                 il Ge+G+GKT+L+++lal +aeg+ p      +  +s
  CTQ27741.1 238 ILVGEPGVGKTALVEGLALRIAEGNVPDA----LKPVS 271
                 799**********************9984....33344 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.14
                 EEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaeg 27 
                  +l G++G GKT  +  la+a+  g
  CTQ27741.1 614 FLLVGPSGTGKTETALALADALFGG 638
                 6899********9999999988655 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00024      0.11      45     107 ..     232     298 ..     217     360 .. 0.78
   2 !   10.6   0.1   0.00077      0.35      50      70 ..     614     634 ..     608     648 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00024
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavr....aglsvlfvrvedLveelkrarrdgklaralkrll 107
                 ++k+n +l+G +GvGK+ l   l+ + ++    + l+ + vr+ dL    + a  +g+++++lk+++
  CTQ27741.1 232 RRKNNPILVGEPGVGKTALVEGLALRIAEgnvpDALKPVSVRTLDLGLLQAGAGVKGEFEQRLKNII 298
                 6899**************9888877655421115556666666677666666666777776666655 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00077
   IstB_IS21  50 ivllGpsGvGKshlaialgve 70 
                 ++l+GpsG+GK+  a al+ +
  CTQ27741.1 614 FLLVGPSGTGKTETALALADA 634
                 789***************976 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0011      0.53       2      39 ..     216     253 ..     215     262 .. 0.88
   2 !    7.9   0.0    0.0058       2.7     102     204 ..     290     388 ..     278     402 .. 0.85
   3 ?    3.1   0.0      0.17        78      16      68 ..     607     658 ..     604     711 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0011
    ATPase_2   2 fdRekelkeleeilerepneiyfiYGpegsGKtaLlke 39 
                 f R++e++++  il+r +++   + G  g+GKtaL+  
  CTQ27741.1 216 FGRDTEIRQMVDILSRRRKNNPILVGEPGVGKTALVEG 253
                 679************9998888889**********975 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0058
    ATPase_2 102 vfkaielllekikkkgkkiiiiiDelqklidlglngaellvkeLlnliesltkekhlcvviclsSeglfiervyneselegrhkyilvddldketalnf 200
                  ++ +++++e+++++   + ++iDe+  +i  g   ++   ++ +nl++  +++ +l+ + +++  +   ++ ++ + le r + ++vd  d +ta  +
  CTQ27741.1 290 FEQRLKNIIEAVQQSPSPVLLFIDEAHTII--GAG-NQAGGADAANLLKPALARGELRTI-AATTWSEYKQYFERDAALERRFQMVKVDEPDDDTACLM 384
                 5788999********999************..543.556667888999998999999875.6677899999999****************999999999 PP

    ATPase_2 201 lkeg 204
                 l+ +
  CTQ27741.1 385 LRGL 388
                 8876 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.17
    ATPase_2  16 erepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldef 68 
                 e++p+ + ++ Gp g GKt     ++  l   +++ +  i+l+e+++ ++ + 
  CTQ27741.1 607 ENGPQGVFLLVGPSGTGKTETALALADALFG-GEKALITINLSEYQEPHTVSQ 658
                 67899999999********999988888844.556777788888877776655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0016      0.74      26      58 ..     226     259 ..     218     318 .. 0.76
   2 !   12.9   0.0   0.00013     0.058      36      79 ..     614     657 ..     610     661 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0016
       AAA_7  26 lelllk.nkkpvllvGptGtGKtviikdllkkld 58 
                 ++ l + +k++ +lvG+ G+GKt++++ l  ++ 
  CTQ27741.1 226 VDILSRrRKNNPILVGEPGVGKTALVEGLALRIA 259
                 5555541456789*************99655554 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00013
       AAA_7  36 vllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlq 79 
                 +llvGp+GtGKt ++  l ++l   +   +tin+s + +++++ 
  CTQ27741.1 614 FLLVGPSGTGKTETALALADALFGGEKALITINLSEYQEPHTVS 657
                 79*********************9************99988775 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.26   1.2e+02       8      40 ..     222     252 ..     215     265 .. 0.68
   2 !   19.2   0.0   1.7e-06   0.00077      25     142 ..     614     731 ..     583     744 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.26
                      HHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHH CS
  Sigma54_activat   8 lkelleqikkvaktdlsvlitGesGtGKellar 40 
                      ++++++ +++    + + +++Ge G+GK+ l +
       CTQ27741.1 222 IRQMVDILSRR--RKNNPILVGEPGVGKTALVE 252
                      44444444433..33456778*******99876 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.7e-06
                      EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHHHHHHH CS
  Sigma54_activat  25 vlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQekLlrv 116
                       l++G sGtGK+  a a+ +a    ek ++++n ++++e    s+L G   G + G  +      +++k   ++++LDe+++   ++ + + +v
       CTQ27741.1 614 FLLVGPSGTGKTETALALADALFGGEKALITINLSEYQEPHTVSQLKGSPPG-YVGYGQGGIltEAVRKRPYSVVLLDEVEKAHRDVMNLFYQV 706
                      699*********************************************9998.67765544333556666779*********999997766666 PP

                      HHHSEEESBTSSSEEE--EEEEEEES CS
  Sigma54_activat 117 lqegevervGsskeikvdvriiaatn 142
                       ++g v r G+ +ei++   +i  t 
       CTQ27741.1 707 FDRG-VMRDGEGREIDFRNTVILMTA 731
                      6655.667799999999888888775 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.6e-05     0.012       1      44 [.      22      65 ..      22      71 .. 0.86
   2 ?    4.9   0.0     0.062        28       9      28 ..     105     123 ..     100     127 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.6e-05
                HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHH CS
       Clp_N  1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldal 44
                A +l++ + h++i +EH+Ll Lle+++G++  l ++   d dal
  CTQ27741.1 22 AASLCQTRAHAEILPEHWLLKLLEQGEGDLTVLARRYEWDMDAL 65
                78999***********************9988888877776666 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.062
                 TCSSB-HHHHHHHHHHSCTS CS
       Clp_N   9 ghqyistEHLLlALleeddG 28 
                 g ++i + HLL+AL e +++
  CTQ27741.1 105 GEAQIRSVHLLMALVE-KQN 123
                 668999*******887.555 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0032       1.5      22      54 ..     221     253 ..     219     273 .. 0.87
   2 !    8.1   0.0    0.0035       1.6     111     184 ..     297     373 ..     277     376 .. 0.73
   3 ?    1.1   0.0      0.49   2.3e+02      37      51 ..     613     627 ..     582     633 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0032
        TniB  22 rLeeLleypkrkrmpnlllvGdsnnGKtmivek 54 
                 +++++++  +r r +n +lvG++ +GKt++ve 
  CTQ27741.1 221 EIRQMVDILSRRRKNNPILVGEPGVGKTALVEG 253
                 5678899999********************986 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0035
        TniB 111 vlrllrel.kvrvLiiDEihnll.agsarkqreflnalk.sLgnelkipivlvGteealralrtDpqlasRFepial 184
                 +++  ++  ++ +L iDE h ++ ag++     + n+lk  L +    +i +    e  + +++D+ l++RF+ +++
  CTQ27741.1 297 IIEAVQQSpSPVLLFIDEAHTIIgAGNQAGGADAANLLKpALARGELRTIAATTWSEYKQYFERDAALERRFQMVKV 373
                 333333331456789******985788889999******446665556777777789999*************9886 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.49
        TniB  37 nlllvGdsnnGKtmi 51 
                   llvG+s +GKt  
  CTQ27741.1 613 VFLLVGPSGTGKTET 627
                 579**********75 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.06        28       4      22 ..     236     254 ..     233     282 .. 0.86
   2 ?   -1.9   0.0       4.9   2.3e+03      45      73 ..     347     375 ..     327     379 .. 0.83
   3 !   13.6   0.0     9e-05     0.041       5      87 ..     614     705 ..     612     718 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.06
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 + +++G++g+GKT l+  l
  CTQ27741.1 236 NPILVGEPGVGKTALVEGL 254
                 55799********998755 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.9
      AAA_24  45 dieswedfldevvelaaeladyktlviDt 73 
                  +++w + +++++ +aa +++++ + +D 
  CTQ27741.1 347 AATTWSEYKQYFERDAALERRFQMVKVDE 375
                 3459*******************999996 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 9e-05
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel...........aaeladyktlviDtideleelclaevir 87 
                 +l++Gpsg+GKT +a+ l  ++lf   ek l  ++  ++++++++ +++                 a  +++y+++ +D ++++ + +++ +++
  CTQ27741.1 614 FLLVGPSGTGKTETALAL-ADALF-GGEKALITINLSEYQEPHTVSQLKGSPPGYvgygqggilteAVRKRPYSVVLLDEVEKAHRDVMNLFYQ 705
                 689***************.77665.778888888888888886666555554444888999999999999999999999999999999987766 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.54   2.5e+02      23      41 ..     238     256 ..     223     271 .. 0.90
   2 ?    3.4   0.1       0.2        93     115     192 ..     437     530 ..     352     536 .. 0.68
   3 !   12.7   0.0    0.0003      0.14      19      46 ..     611     638 ..     605     734 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.54
      AAA_23  23 lItGpNGaGKTTildAikl 41 
                 +++G+ G GKT++++ + l
  CTQ27741.1 238 ILVGEPGVGKTALVEGLAL 256
                 689************9865 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.2
      AAA_23 115 deleqfisellgskkiilnlilflgqerfeefel..kdkke..............rleelekeleeledekkllekleqekekekeleeleeel 192
                 + + ++++e l++ k++l+ +++ +q   e ++l  +++ +              +l+ le+++ ++ +  + l +  +  ++++e+++l+++l
  CTQ27741.1 437 RMSLDTVPEPLTRMKAQLTALAMEKQALLEDIALgnSARGDrladieqeeirlilALDTLETQYGQELQLTEALLACRRDISRQAEINDLQNAL 530
                 5555777888888888888888888888666666442233333333345566666777777777777777777777777778888999999887 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 0.0003
      AAA_23  19 kgltlItGpNGaGKTTildAiklaLyge 46 
                 +g++l++Gp G+GKT    A+  aL+g 
  CTQ27741.1 611 QGVFLLVGPSGTGKTETALALADALFGG 638
                 59***********************994 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.011       5.2      12      44 ..     230     261 ..     219     270 .. 0.81
   2 !   11.5   0.0   0.00029      0.14      18      58 ..     613     654 ..     595     667 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.011
  Zeta_toxin  12 sqerPklillgGqpGAGKselaellkdelerqg 44 
                 s++r+   +l+G pG GK++l e l+ +++ +g
  CTQ27741.1 230 SRRRKNNPILVGEPGVGKTALVEGLALRIA-EG 261
                 667788889*************99988874.44 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00029
  Zeta_toxin  18 lillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelh 58 
                 + ll+G +G GK+e+a +l+d+l   ++  ++++  +++e h
  CTQ27741.1 613 VFLLVGPSGTGKTETALALADALFgGEKALITINLSEYQEPH 654
                 6689*******************978888999**99999987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.011         5       3      20 ..     238     255 ..     238     319 .. 0.73
   2 ?   -2.0   0.0       8.1   3.7e+03      22      62 ..     394     431 ..     388     453 .. 0.59
   3 !    9.0   0.0    0.0033       1.5       1      24 [.     613     636 ..     613     685 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.011
      AAA_33   3 llvGlpGsGKstlaerll 20 
                 +lvG pG+GK+ l+e+l+
  CTQ27741.1 238 ILVGEPGVGKTALVEGLA 255
                 689************998 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 8.1
      AAA_33  22 klgavllssdtlrrrlfg.....tdqqsktdytrvldrlyqilnel 62 
                  +++v+++ d++r +++      t+        ++ d++ + l ++
  CTQ27741.1 394 DHHGVHITDDAVRAAVTLsrrylTG-------RQLPDKAVDLL-DT 431
                 5668999999998888752222222.......22333333333.44 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0033
      AAA_33   1 lvllvGlpGsGKstlaerllkklg 24 
                 ++llvG++G+GK+  a  l+ +l 
  CTQ27741.1 613 VFLLVGPSGTGKTETALALADALF 636
                 689**********99998887765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0056       2.6      18      98 ..     234     316 ..     221     376 .. 0.71
   2 !    7.9   0.1     0.005       2.3      18      41 ..     611     634 ..     605     648 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0056
      AAA_30  18 drvavltGpAGtGKttalkalreaweaag..grviglAptgkaAkvLaeelgieastiakllkrlkgrarlepg.tllivDEag 98 
                 +   +l+G +G GKt ++++l+  +++ +    +  ++        L++++g++++  ++l +  ++ ++ +p+  ll +DEa 
  CTQ27741.1 234 KNNPILVGEPGVGKTALVEGLALRIAEGNvpDALKPVSVRTLDLGLLQAGAGVKGEFEQRLKNIIEA-VQQSPSpVLLFIDEAH 316
                 445699*************996555544322445555555555555666777777666666655554.3344444777777775 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.005
      AAA_30  18 drvavltGpAGtGKttalkalrea 41 
                 + v +l+Gp GtGKt +  al++a
  CTQ27741.1 611 QGVFLLVGPSGTGKTETALALADA 634
                 67899**********887776655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0      0.01       4.8       3      24 ..     239     260 ..     238     273 .. 0.87
   2 ?    7.2   0.0     0.014       6.4       2      23 ..     615     636 ..     614     659 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.01
  RNA_helicase   3 lyGpsgeGKStlakeLakallk 24 
                   l+G++g+GK+ l++ La ++++
    CTQ27741.1 239 LVGEPGVGKTALVEGLALRIAE 260
                   79**************999874 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.014
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   +l+Gpsg+GK+ +a  La+al 
    CTQ27741.1 615 LLVGPSGTGKTETALALADALF 636
                   689*************999986 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.76   3.5e+02      17      48 ..     227     258 ..     191     264 .. 0.75
   2 ?    1.5   0.0      0.59   2.7e+02     134     147 ..     308     321 ..     285     364 .. 0.72
   3 !   11.7   0.0   0.00043       0.2       8      50 ..     586     637 ..     582     648 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.76
                 ......TTSEEEEEESTTSTHHHHHHHHHHHH CS
      ResIII  17 eklkskrdkrglikmaTGtGKTlvaaklierl 48 
                 + l+ +r+++ +++ + G+GKT +   l+ r+
  CTQ27741.1 227 DILSRRRKNNPILVGEPGVGKTALVEGLALRI 258
                 3344367778899*********9987766665 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.59
                 SEEEEETGGGTTS. CS
      ResIII 134 dviiiDEaHrlgak 147
                  +++iDEaH + ++
  CTQ27741.1 308 VLLFIDEAHTIIGA 321
                 389******98774 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00043
                 HHHHHHHHT..............TTS.EEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII   8 Qeeaienlleklks........krdk.rglikmaTGtGKTlvaaklierllk 50 
                 Qe a+ +++  l +        ++ +  +l++ + GtGKT +a++l+++l+ 
  CTQ27741.1 586 QEAALSAIARRLRAaktgltpeNGPQgVFLLVGPSGTGKTETALALADALFG 637
                 8888888887777777788877555535669*****************9986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.045        21       2      20 ..     238     256 ..     238     279 .. 0.86
   2 !    9.0   0.1    0.0041       1.9       2      24 ..     615     636 ..     615     662 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.045
      AAA_18   2 lltGtpGvGKttlakeLsk 20 
                 +l G pGvGKt l + L+ 
  CTQ27741.1 238 ILVGEPGVGKTALVEGLAL 256
                 689**********999964 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0041
      AAA_18   2 lltGtpGvGKttlakeLskrlgf 24 
                 ll G++G+GKt+ a +L++ l f
  CTQ27741.1 615 LLVGPSGTGKTETALALADAL-F 636
                 589**************9987.3 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.041        19      22      41 ..     234     253 ..     224     258 .. 0.81
   2 !    8.3   0.1    0.0041       1.9      21      36 ..     610     625 ..     602     643 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.041
      AAA_29  22 kgatlltGpsGsGKSTllDA 41 
                 k++ +l+G+ G+GK++l+  
  CTQ27741.1 234 KNNPILVGEPGVGKTALVEG 253
                 45789************965 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0041
      AAA_29  21 lkgatlltGpsGsGKS 36 
                 ++g++ll+GpsG+GK+
  CTQ27741.1 610 PQGVFLLVGPSGTGKT 625
                 6789***********8 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.022        10       7      79 ..     239     321 ..     234     372 .. 0.63
   2 !    7.7   0.0    0.0074       3.4       4      76 ..     613     695 ..     611     714 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.022
      AAA_14   7 itGaRrvGKTtllkqlikell.......vkkesilyinldderd....kkladpekllelileklke.ekktylflDEiqevpew 79 
                 ++G   vGKT l++ l+ +          k+ s+  ++l   +     k   ++e+ l+ i e +++ +   +lf+DE++ + ++
  CTQ27741.1 239 LVGEPGVGKTALVEGLALRIAegnvpdaLKPVSVRTLDLGLLQAgagvK--GEFEQRLKNIIEAVQQsPSPVLLFIDEAHTIIGA 321
                 6677789999999888754446654544444444444444444454321..2333333444444322368899*******99443 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0074
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderd....kkladpe.........kllelilek.lkeekktylflDEiqev 76 
                 + +++G+  +GKT  +  l++ l+  ++  + inl + ++    +   + +              il + ++++  ++++lDE+ ++
  CTQ27741.1 613 VFLLVGPSGTGKTETALALADALFGGEKALITINLSEYQEphtvS---QLKgsppgyvgyG-QGGILTEaVRKRPYSVVLLDEVEKA 695
                 6789****************99999999*******9988854331...2223334444431.2222222132234456999999876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.034        16       3      23 ..     238     259 ..     236     372 .. 0.67
   2 !    7.6   0.1    0.0089       4.1       3      22 ..     615     634 ..     613     650 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.034
      AAA_28   3 vitGgestGKTtlleaLaar.g 23 
                 +++G ++ GKT l+e La r  
  CTQ27741.1 238 ILVGEPGVGKTALVEGLALRiA 259
                 68999************95542 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0089
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                  ++G+++tGKT ++ aLa+ 
  CTQ27741.1 615 LLVGPSGTGKTETALALADA 634
                 699**************975 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.22     1e+02      54      75 ..     238     259 ..     204     267 .. 0.82
   2 ?   10.2   0.0   0.00067      0.31      25      74 ..     582     635 ..     555     652 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.22
                 XXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  54 LlaGpsgtGktalaiaiskelg 75 
                 +l+G++g Gktal  +++  ++
  CTQ27741.1 238 ILVGEPGVGKTALVEGLALRIA 259
                 578**********999887776 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00067
                 XXXXXXXXXXXXXXXXXXXXXXXX...XXX.XXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  25 glvGqkkareaagvivelikekkl...aGr.avLlaGpsgtGktalaiaiskel 74 
                  +vGq++a  a +  ++  k++     + + + Ll+GpsgtGkt  a+a++ +l
  CTQ27741.1 582 RVVGQEAALSAIARRLRAAKTGLTpenGPQgVFLLVGPSGTGKTETALALADAL 635
                 67888888887777777776654311122315699***************9987 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.012       5.6      11      42 ..     226     257 ..     218     264 .. 0.73
   2 ?    6.1   0.2     0.023        10       4      43 ..     587     635 ..     584     644 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.012
                 HHHHHHCHTEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  11 gkklakalgdvilLeGdLGaGKTtlvrglaka 42 
                    l +  ++  +L G+ G+GKT+lv gla  
  CTQ27741.1 226 VDILSRRRKNNPILVGEPGVGKTALVEGLALR 257
                 44454444666799**************9865 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.023
                 HHHHHHHHHHHHHCH.........TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE   4 eeetealgkklakal.........gdvilLeGdLGaGKTtlvrglakal 43 
                 e+++ a++++l +a          + v+lL G+ G+GKT  + +la al
  CTQ27741.1 587 EAALSAIARRLRAAKtgltpengpQGVFLLVGPSGTGKTETALALADAL 635
                 677788888887644555555544446************9999888876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0035       1.6      86     120 ..     221     255 ..     201     268 .. 0.81
   2 ?   -1.1   0.0       3.4   1.6e+03      39     117 ..     479     566 ..     477     580 .. 0.74
   3 ?    2.6   0.1      0.25   1.1e+02     100     114 ..     612     626 ..     564     653 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0035
                  THTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  86 tkegleelkellkdktsvlvGqSGvGKStLinall 120
                  + +++ ++ ++ +++  +lvG+ GvGK++L++ l+
   CTQ27741.1 221 EIRQMVDILSRRRKNNPILVGEPGVGKTALVEGLA 255
                  45667777778888899**************9876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.4
                  HHHHHHTT-EEEEEEE-GGG--HHH.........HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHH CS
  RsgA_GTPase  39 LvlaeekgiepvivlnKiDlleeee.........eleelkeelealgyevllvsaktkegleelkellkdktsvlvGqSGvGKStLin 117
                  L+ +e+++i+++++l  ++    +e           ++++ + e  +++  l+ +++++ l  l   ++   +v++  +Gv  S+L++
   CTQ27741.1 479 LADIEQEEIRLILALDTLETQYGQElqlteallaCRRDISRQAEINDLQNALIAVQQGNPLLGLDVDVRTVATVIADWTGVPLSSLMK 566
                  5667777788888887777776666666666664444555555566678888888889999999999999999999999999999876 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.25
                  SEEEEECSTTSSHHH CS
  RsgA_GTPase 100 ktsvlvGqSGvGKSt 114
                   + +lvG+SG GK+ 
   CTQ27741.1 612 GVFLLVGPSGTGKTE 626
                  57899********84 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.021       9.7      10      40 ..     234     263 ..     226     403 .. 0.63
   2 ?    6.7   0.1     0.019       8.6      10      29 ..     611     630 ..     606     642 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.021
      AAA_19  10 ekvllvtaGpGtGKTrvlkhivallvelggv 40 
                 +++ ++++ pG GKT ++++   l +++g+v
  CTQ27741.1 234 KNNPILVGEPGVGKTALVEGLA-LRIAEGNV 263
                 5667899********9887754.44444444 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.019
      AAA_19  10 ekvllvtaGpGtGKTrvlkh 29 
                 ++v+l++++ GtGKT++  +
  CTQ27741.1 611 QGVFLLVGPSGTGKTETALA 630
                 7899***********99765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.031        14      24      55 ..     236     267 ..     216     287 .. 0.80
   2 ?    4.7   0.2     0.036        17      25      45 ..     614     634 ..     599     735 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.031
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllpplseeeal 55 
                   n +lvG pG GKt l + l+  +++ +  +al
    CTQ27741.1 236 NPILVGEPGVGKTALVEGLALRIAEGNVPDAL 267
                   6699***********99887666665555555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.036
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsl 45 
                   +llvGp+G+GKt  a +l+  
    CTQ27741.1 614 FLLVGPSGTGKTETALALADA 634
                   689999999999888777654 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.18        83       5      26 ..     238     259 ..     234     268 .. 0.85
   2 ?    9.3   0.1    0.0018      0.81       3      26 ..     613     636 ..     611     661 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.18
                 EEEESTTSSHHHHHHHHHHHHH CS
       SRP54   5 llvGlqGaGKTttlaKLaallk 26 
                 +lvG  G+GKT  +  La ++ 
  CTQ27741.1 238 ILVGEPGVGKTALVEGLALRIA 259
                 79************99998776 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0018
                 EEEEEESTTSSHHHHHHHHHHHHH CS
       SRP54   3 villvGlqGaGKTttlaKLaallk 26 
                 v+llvG+ G+GKT t+  La+ l 
  CTQ27741.1 613 VFLLVGPSGTGKTETALALADALF 636
                 89**************99998775 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0022         1      47      95 ..     228     280 ..     212     315 .. 0.67
   2 ?    1.9   0.0      0.23     1e+02      56      92 ..     614     650 ..     581     667 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0022
      DUF815  47 fleglpannvLLwGarGtGKSslvkallneyaeeg....Lrlievekedlkel 95 
                  l+ ++ nn +L+G+ G+GK +lv  l  ++ae +    L+ + v+  dl  l
  CTQ27741.1 228 ILSRRRKNNPILVGEPGVGKTALVEGLALRIAEGNvpdaLKPVSVRTLDLGLL 280
                 5667788999*****************99999877788855555444444333 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.23
      DUF815  56 vLLwGarGtGKSslvkallneyaeegLrlievekedl 92 
                  LL+G  GtGK  +  al  ++   + +li ++ ++ 
  CTQ27741.1 614 FLLVGPSGTGKTETALALADALFGGEKALITINLSEY 650
                 69***********999999999888888887776655 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0084       3.8       3      19 ..     238     254 ..     237     264 .. 0.88
   2 ?    4.0   0.0      0.12        57       3      36 ..     615     647 ..     614     661 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0084
                 EEESSTTSSHHHHHHCH CS
         Roc   3 vlvGdsgvGKtsllkrf 19 
                 +lvG+ gvGKt l++ +
  CTQ27741.1 238 ILVGEPGVGKTALVEGL 254
                 79***********9865 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.12
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdf 36 
                 +lvG sg+GKt  +  + +  f   ek+ i +++
  CTQ27741.1 615 LLVGPSGTGKTETALALADALFGG-EKALITINL 647
                 79**********999999887754.345555554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       1.4   6.4e+02      79     133 ..      62     128 ..      22     129 .. 0.68
   2 ?    5.0   0.0     0.071        33      15      42 ..     238     263 ..     229     346 .. 0.79
   3 ?    4.9   0.0     0.078        36      14      32 ..     614     632 ..     608     660 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.4
                 H.........HHHTCHHHHHHHSTTGGTTCBGESTTS..GGS-H.HHHHHHHHHHHHHHTSSEEEEE CS
                 x.........xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  79 n.........esdeeiekalsklglkelkdtvvkssp..ssLSg.GqkqrvalarallkkpkllllD 133
                           + d+++  ++++ +l++ + + +++    +sLSg  q + v l +al++k++l+ +D
  CTQ27741.1  62 MdalwqdllnWLDKQPRSVRHRPQLSDHTLRLMQEAWliASLSGeAQIRSVHLLMALVEKQNLIQCD 128
                 0445555555677777778888888776666665544789999845667899999999999998776 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.071
                 EEEESTTSSHHHHHHHHTTSS--SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagllkpteGei 42 
                  +vGe G GK+ L++ la     +eG++
  CTQ27741.1 238 ILVGEPGVGKTALVEGLALRI--AEGNV 263
                 69***********99887654..35555 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.078
                 EEEEESTTSSHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlklla 32 
                   +vG++G+GK+  + +la
  CTQ27741.1 614 FLLVGPSGTGKTETALALA 632
                 679*********8777766 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.18        84       8      43 ..     221     258 ..     215     281 .. 0.82
   2 ?    7.7   0.2    0.0047       2.2      21      41 ..     613     633 ..     598     645 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.18
                 HHHHHHHHHH..H-SEEEEE--TTSSTTHHHHHHHHHH CS
        PhoH   8 eQkeylealk..kndivfaiGpaGtGKtylavalavea 43 
                 e ++++++l+  +++  + +G+ G GKt l   la+++
  CTQ27741.1 221 EIRQMVDILSrrRKNNPILVGEPGVGKTALVEGLALRI 258
                 5577888887766778899**********988877765 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0047
                 EEEEE--TTSSTTHHHHHHHH CS
        PhoH  21 ivfaiGpaGtGKtylavalav 41 
                 +   +Gp+GtGKt  a+ala 
  CTQ27741.1 613 VFLLVGPSGTGKTETALALAD 633
                 67789********99999884 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.7   2.6e+03      38      86 ..     240     284 ..     226     298 .. 0.69
   2 ?   11.1   0.0    0.0003      0.14      38      67 ..     617     649 ..     612     661 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.7
       AAA_6  38 aGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGlaqsGa 86 
                  G  g GKt  v  La  +a+     n+ d+l+  s+  +  Gl q+Ga
  CTQ27741.1 240 VGEPGVGKTALVEGLALRIAE----GNVPDALKPVSVRTLDLGLLQAGA 284
                 566777777666666655554....456666666666666666666665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0003
       AAA_6  38 aGpagtGKtEtvkdLakal...akqvvvfncsd 67 
                  Gp+gtGKtEt   La al    k ++ +n s+
  CTQ27741.1 617 VGPSGTGKTETALALADALfggEKALITINLSE 649
                 7***************99844224555556655 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0       0.6   2.8e+02      20      42 ..     237     259 ..     221     299 .. 0.80
   2 ?    8.7   0.0    0.0029       1.3      18      42 ..     608     636 ..     588     666 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.6
      AAA_11  20 tliqGPPGtgKTktivellsqll 42 
                  ++ G PG gKT  + +l  +++
  CTQ27741.1 237 PILVGEPGVGKTALVEGLALRIA 259
                 57889********9999998884 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0029
      AAA_11  18 e....itliqGPPGtgKTktivellsqll 42 
                 +    ++l+ GP GtgKT t ++l  +l 
  CTQ27741.1 608 NgpqgVFLLVGPSGTGKTETALALADALF 636
                 23445899***************998885 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.29   1.4e+02      38      84 ..     227     274 ..     219     299 .. 0.79
   2 ?    7.0   0.0     0.011       5.1      41      69 ..     607     635 ..     587     661 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.29
       Rad17  38 dvLesrkkriLLisGPsGCgkstvvkvLs.kelgiklrewlnpvslke 84 
                 d+L +r+k+  ++ G +G gk+  v+ L+ ++   ++ + l pvs++ 
  CTQ27741.1 227 DILSRRRKNNPILVGEPGVGKTALVEGLAlRIAEGNVPDALKPVSVRT 274
                 67888888888899***********99983444556777777777665 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.011
       Rad17  41 esrkkriLLisGPsGCgkstvvkvLskel 69 
                 e+ ++ + L+ GPsG gk+ +   L+  l
  CTQ27741.1 607 ENGPQGVFLLVGPSGTGKTETALALADAL 635
                 5566679************8887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (884 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              39  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 5845.93
//
Query:       CTQ27742.1  [L=839]
Description: Rhs element Vgr protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-62  211.2   3.2    3.1e-62  210.6   3.2    1.3  1  Phage_GPD      Phage late control gene D protein (GPD)
      1e-47  161.8   1.4    2.9e-47  160.3   1.4    1.7  1  DUF2345        Uncharacterized protein conserved in bacteria 
    1.4e-35  121.7   3.4    1.5e-35  121.6   0.3    2.6  3  T6SS_Vgr       Putative type VI secretion system Rhs element 
  ------ inclusion threshold ------
       0.02   14.2   0.4      0.038   13.3   0.4    1.4  1  Sarcoglycan_1  Sarcoglycan complex subunit protein
       0.11   11.6   0.2       0.25   10.5   0.2    1.5  1  HAP1_N         HAP1 N-terminal conserved region


Domain annotation for each model (and alignments):
>> Phage_GPD  Phage late control gene D protein (GPD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.6   3.2   8.7e-66   3.1e-62       2     301 ..      34     356 ..      33     359 .. 0.90

  Alignments for each domain:
  == domain 1  score: 210.6 bits;  conditional E-value: 8.7e-66
   Phage_GPD   2 eglselfefeldllssdadldlkallgqpvtvsield.........dgskrvihGlvteaeqvgadgrlarYrltlrPwlwlltlrrdsriFqnktvpd 91 
                 e+ls++f+++++++s+d ++  + +l + ++++++ +         ++  rvi+G+vt +e++ ++++++ Y ltl+P+l+ll +++++ i+q+++vp+
  CTQ27742.1  34 EALSQPFRYRIEFTSADHAISKEMMLMKAASLTLQAPvaqgfginvQQPVRVIQGVVTGFERLSTSRDETHYALTLQPRLALLNRSHQNAIYQDQSVPQ 132
                 9*********************************999*********999************************************************** PP

   Phage_GPD  92 Ileavlaeh..giavekrfrlersypkreycvQyrESdlaFvsRLleeeGifyffehedg..shtLvladassalppsaggpsiryhrqsgteae.rea 185
                 I+e++l+e       ++ f+l+++yp re ++Qy+E dl F++RLl e Gi+++f+ +     ++  ++d+++++++   g +++ +++sg++++  +a
  CTQ27742.1 133 IVEKILRERhgLRGQDFLFSLTKTYPRREQVMQYGEDDLRFITRLLGEVGIWFRFTADTRlhIDVAEFCDSQQGYEK---GLTLPSVPPSGQQSAgVDA 228
                 ********98855566889**************************************6665666888********99...99999999999999899** PP

   Phage_GPD 186 itrfaearrlapgkvtlrdydykkpkadlsaeaaqpr.aaasalevydypgdyask..........aegerlarlrlealrararrfsgesnvrglapG 273
                 ++++a+++r++ ++v++rdy+y++++ad +a+ +  r + ++++e y++  +y ++          + g  +arlr+e+  + ++r+++ +++ +l pG
  CTQ27742.1 229 VWEMACRHRVVEQQVSTRDYNYREATADMNAQVDVTRgETTTFGEAYHWGDNYLTAgnvhdrhpapESGAFYARLRHERYLNGQTRMQAITSCPTLCPG 327
                 ****************************888875445688999******87444445555556666********************************* PP

   Phage_GPD 274 rtftlsghp.rkaaanreylitsvehhge 301
                 ++++++g +  + ++ +  l+t+ + h++
  CTQ27742.1 328 QVLKVTGGEeVAGEFADGVLVTAMHSHAR 356
                 *******8874445666788887777665 PP

>> DUF2345  Uncharacterized protein conserved in bacteria (DUF2345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.3   1.4     8e-51   2.9e-47       3     143 ..     612     752 ..     611     756 .. 0.98

  Alignments for each domain:
  == domain 1  score: 160.3 bits;  conditional E-value: 8e-51
     DUF2345   3 egalpelaqpllvlsapaGialttpqslqlaagenlaltagqdtqlaagkrllaaageaislfaqkagikliAakgkveiqAqsdalellAkkdvtvtS 101
                 e++l++l++++l++sap+Gialt++++lq++ag+nl++tag+++++++ k+l++ +g a+s+f++k gi+liA++g+v++qAq+d ++llA+k++++ S
  CTQ27742.1 612 EQQLTDLKKSVLLVSAPEGIALTSGEHLQVSAGHNLIATAGKNADVSVVKNLFIGVGSALSVFVRKLGIRLIANQGPVQMQAQNDLMALLARKEISIVS 710
                 57899********************************************************************************************** PP

     DUF2345 102 tegkieisAkkeillaaggayirleggnIelgtpGkievkaa 143
                 te++iei Akk++++++gg+yi+l++++Ie +t G+++ +a+
  CTQ27742.1 711 TEDSIEIIAKKRVTINGGGSYITLNASGIESATAGEYRTRAG 752
                 *************************************99987 PP

>> T6SS_Vgr  Putative type VI secretion system Rhs element Vgr
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.3   4.1e-39   1.5e-35       3     106 ..     491     592 ..     489     594 .. 0.95
   2 ?    0.2   0.1      0.23   8.2e+02      70      99 ..     588     616 ..     586     621 .. 0.80
   3 ?   -1.1   0.0      0.56     2e+03      52      78 ..     629     655 ..     625     660 .. 0.84

  Alignments for each domain:
  == domain 1  score: 121.6 bits;  conditional E-value: 4.1e-39
    T6SS_Vgr   3 vk.gsgynqlvldDtegqeriqLaseh.gksqLnlGhlvdqedngrgakrGeGfeLrTdaagavRagkGlllstearakaqgkqldmeealaqleqaae 99 
                 v  ++++n+++ldD++g+e+i+L++e+ gksqLnlGhlvd++ +   ++rGeGfeLrTd++ga+Ra+kG+++s++++a+aqg++l me a+++l++a+e
  CTQ27742.1 491 VLrTPANNKIRLDDERGKEHIKLSTEYgGKSQLNLGHLVDSD-R---QPRGEGFELRTDSWGAIRAQKGIFISADGQAQAQGQVLAMEPAVSNLAEARE 585
                 55599**********************99*************.4...7*************************************************** PP

    T6SS_Vgr 100 laesLsd 106
                 ++ s+s 
  CTQ27742.1 586 QMMSISG 592
                 **99876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.23
    T6SS_Vgr  70 lllstearakaqgkqldmeealaqleqaae 99 
                 + +s +a+ ka+++  d ++ +++leq+ +
  CTQ27742.1 588 MSISGDAQ-KATANPADLQAQITLLEQQLT 616
                 56788887.69999********99999876 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.56
    T6SS_Vgr  52 eGfeLrTdaagavRagkGlllsteara 78 
                 eG+ L++ ++  v ag+ l+ ++ ++a
  CTQ27742.1 629 EGIALTSGEHLQVSAGHNLIATAGKNA 655
                 799999999999999999999997765 PP

>> Sarcoglycan_1  Sarcoglycan complex subunit protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   1.1e-05     0.038      47     222 ..     550     727 ..     539     753 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
  Sarcoglycan_1  47 leiipdvgvklegeaedleklvakk.....ihgfkdkdlsiesdrnvvlsrkaarneegsvtsqltvgedgavlesvnsfevkdpkdgktlFsadr 137
                    ++  ++  +  +g+a+   ++ a +     + + +++ +si++d++  + + a      ++++q+t+ e++ +  +   + v  p++  +l s ++
     CTQ27742.1 550 IRAQKGIFISADGQAQAQGQVLAMEpavsnLAEAREQMMSISGDAQKATANPA------DLQAQITLLEQQLTDLKKSVLLVSAPEG-IALTSGEH 638
                    5555555555566666666666666665669999999*******998888555......3456666666655666666666666665.44444444 PP

  Sarcoglycan_1 138 eevtvgldkgvkkLrvk...svetprirs...eadedLklesdtr.lslrgneg.vrieakageieatslkdikLkssnGsivLdak.giflkn 222
                       +v++ ++     ++    +  + ++     +++ L + +++  + l +n+g v+++a++  +   ++k+i++ s++ si + ak ++ ++ 
     CTQ27742.1 639 L--QVSAGHNL---IATagkNADVSVVKNlfiGVGSALSVFVRKLgIRLIANQGpVQMQAQNDLMALLARKEISIVSTEDSIEIIAKkRVTING 727
                    4..44444222...22223344444444444455555555555555555555555555555555555555555555555555555554333322 PP

>> HAP1_N  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   6.9e-05      0.25     204     253 ..     573     622 ..     558     634 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.9e-05
      HAP1_N 204 vldcveqlseanqqiaelseelarkleelerqqeeissLlaqivdlqqkl 253
                 +   v++l+ea++q+ ++s + ++ + + +  q +i+ L  q++dl++ +
  CTQ27742.1 573 MEPAVSNLAEAREQMMSISGDAQKATANPADLQAQITLLEQQLTDLKKSV 622
                 445799****************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 5899.97
//
Query:       CTQ27743.1  [L=410]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3040.23
//
Query:       CTQ27744.1  [L=120]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.026   14.6   1.3      0.032   14.3   0.3    1.7  2  Chlorovi_GP_rpt  Chlorovirus glycoprotein repeat


Domain annotation for each model (and alignments):
>> Chlorovi_GP_rpt  Chlorovirus glycoprotein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.52   9.3e+03       8      11 ..      13      16 ..      12      19 .. 0.67
   2 ?   14.3   0.3   1.8e-06     0.032      18      32 ..      92     106 ..      83     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.52
  Chlorovi_GP_rpt  8 fLtg 11
                     fLtg
       CTQ27744.1 13 FLTG 16
                     7887 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.8e-06
  Chlorovi_GP_rpt  18 gtqniDIiGNVvatg 32 
                      g+++i+I+G Vva++
       CTQ27744.1  92 GIVTINIRGGVVASA 106
                      789**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 998.71
//
Query:       CTQ27745.1  [L=632]
Description: putative membrane proteins [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0034   17.5   0.0     0.0097   16.1   0.0    1.7  1  Peptidase_M23  Peptidase family M23


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.4e-07    0.0097      45      87 ..      19      61 ..       9      69 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.4e-07
                   EEEEEEEESEES..S-TTEEE-TTCEEEEEBSTSSCSSSEEEEEE CS
  Peptidase_M23 45 ystlyahlskis..vkegqkVkaGqvIGtvgstgrstgphLhfei 87
                   +++ly+hl++++  vk+g+kV + ++IG  g     +    hf+i
     CTQ27745.1 19 FYSLYMHLKSLAetVKAGDKVYRKDPIGLPGMVDGVN--AFHFQI 61
                   799*******8889***************99666444..678877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4792.03
//
Query:       CTQ27746.1  [L=254]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.019   14.1   0.7      0.028   13.5   0.7    1.3  1  Helveticin_J  Bacteriocin helveticin-J


Domain annotation for each model (and alignments):
>> Helveticin_J  Bacteriocin helveticin-J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.7   1.6e-06     0.028     149     218 ..      12      80 ..       3     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-06
  Helveticin_J 149 lliasidsnntgqfslYdldevNkkLDeaetssvnvniaklkclkafkisnfnevqpikSvQGydldnkk 218
                   +l a+  ++  g++   d+d v  +LD+ +++ vnv+ ++l+  ++ ki+n n +  i+   G+ l++++
    CTQ27746.1  12 MLCATALNSWAGYYNTIDIDGVSIHLDKDKAGYVNVHDDQLNTDYSCKIENWN-DSLISGAGGISLTSDH 80 
                   345667778899****************************************8.99999999***99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1855.69
//
Query:       CTQ27747.1  [L=173]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 1419.95
//
Query:       CTQ27748.1  [L=35]
Description: hypothetical protein CH1034_190231 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 275.61
//
Query:       CTQ27749.1  [L=365]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-27   94.1   1.3    4.5e-27   93.6   0.1    1.9  2  rve_3          Integrase core domain
      8e-24   84.1   0.0      2e-23   82.8   0.0    1.7  1  rve            Integrase core domain
    1.4e-23   83.0   2.8    1.3e-21   76.7   0.9    2.6  2  HTH_Tnp_1      Transposase
    9.2e-12   44.9   5.4    9.8e-11   41.6   5.1    2.4  2  HTH_21         HTH-like domain
    9.4e-08   31.6   5.9    4.1e-06   26.4   0.0    4.1  3  HTH_23         Homeodomain-like domain
    5.1e-06   26.5   3.6    0.00014   21.9   0.0    4.0  4  HTH_28         Helix-turn-helix domain
      1e-05   25.3   0.3     0.0043   16.9   0.0    2.9  2  Terminase_5    Putative ATPase subunit of terminase (gpP-like
    1.4e-05   25.1   0.0    4.1e-05   23.7   0.0    1.8  1  rve_2          Integrase core domain
    0.00012   22.0   0.0    0.00012   22.0   0.0    3.8  4  HTH_29         Winged helix-turn helix
    0.00041   20.5   0.5      0.013   15.6   0.1    2.3  2  HTH_Tnp_1_2    Helix-turn-helix of insertion element transpos
      0.001   19.3   0.1       0.03   14.6   0.0    2.5  2  HTH_18         Helix-turn-helix domain
     0.0035   17.6   0.0      0.012   15.9   0.0    1.9  2  DDE_Tnp_IS240  DDE domain
     0.0065   16.5   3.5      0.021   14.8   0.4    2.4  2  HTH_Tnp_IS630  Transposase
  ------ inclusion threshold ------
      0.013   15.6   0.1       0.11   12.6   0.0    2.4  2  HTH_22         HTH domain
      0.013   15.7   0.1       0.11   12.7   0.0    2.7  2  HTH_17         Helix-turn-helix domain
      0.064   13.1   0.0       0.18   11.7   0.0    1.7  1  Phage_AlpA     Prophage CP4-57 regulatory protein (AlpA)
       0.08   13.1   0.0       0.19   11.9   0.0    1.6  1  DUF1492        Protein of unknown function (DUF1492)
       0.15   12.2   0.7        0.3   11.2   0.1    1.8  2  GP3_package    DNA-packaging protein gp3
        2.3    8.0   4.4       0.99    9.2   1.6    1.8  2  DivIC          Septum formation initiator


Domain annotation for each model (and alignments):
>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       6.2   5.9e+03      39      62 ..     133     156 ..     118     158 .. 0.67
   2 !   93.6   0.1   4.8e-30   4.5e-27       1      67 []     286     352 ..     286     352 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.2
       rve_3  39 laearekleawredYNteRPHssL 62 
                 ++   + +++ r +Y + R H  L
  CTQ27749.1 133 ITLRIREIAETRIRYGCPRIHIQL 156
                 555556788888888888888666 PP

  == domain 2  score: 93.6 bits;  conditional E-value: 4.8e-30
       rve_3   1 lgielsyiapgkPqqNglvEsfngtlrdellneelfrslaearekleawredYNteRPHssLgykTP 67 
                 +g+++ +++pgkP++N ++Es+ng+lrde+ln ++f sl++a+ kl++wr++YN+eR HssL+ +TP
  CTQ27749.1 286 HGVTMDFSRPGKPTDNPFIESLNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERTHSSLNDMTP 352
                 69****************************************************************9 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   2.2e-26     2e-23       5     119 .]     203     315 ..     200     315 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 2.2e-26
         rve   5 gelwqvDvtvvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpq 103
                  + w++D++  ++++g+ + + l+vvd fsr+++a++  ++ + ++v++++er  + +g++ p r+++Dngse++sk++ +++ ++g++++f+rpg+p+
  CTQ27749.1 203 DQCWSMDFVSDNLFNGR-RFRALTVVDNFSRECVAIHAGKSLKGEDVVGVMERL-RVLGKRLPVRIQTDNGSEFISKSLDKWAYQHGVTMDFSRPGKPT 299
                 689*********88777.**********************************65.6666655************************************* PP

         rve 104 dnGkvErfhrtlkdei 119
                 dn  +E+ ++ l+de+
  CTQ27749.1 300 DNPFIESLNGSLRDEC 315
                 *************996 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.9   1.4e-24   1.3e-21       3      75 .]       2      71 ..       1      71 [. 0.97
   2 ?    5.5   0.0     0.023        21      39      63 ..     330     353 ..     324     361 .. 0.78

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 1.4e-24
   HTH_Tnp_1  3 rrrrwsdefKariVreslepgksvsevArrhgvspnqLykWrrqyregeeaspaefeltaleeenrelkrela 75
                +++r+++e++a +++++ e+g++v ev+r++g+s++++y+W++++ +g+++++++ +l++leeen++lkr++a
  CTQ27749.1  2 KKTRYTEEQIAFALKQA-ETGTRVEEVCRKMGISEATFYNWKKKF-GGMSVTKLR-RLRQLEEENQRLKRLVA 71
                459**************.***************************.*********.**************986 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.023
   HTH_Tnp_1  39 qLykWrrqyregeeaspaefeltal 63 
                  L +Wrr+y  +++ s ++  +t++
  CTQ27749.1 330 KLDNWRREYNHERTHSSLN-DMTPA 353
                 699******9888888887.55554 PP

>> HTH_21  HTH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.67   6.3e+02      42      52 ..      23      33 ..      21      42 .. 0.90
   2 !   41.6   5.1     1e-13   9.8e-11       3      59 ..     130     184 ..     127     187 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.67
      HTH_21 42 rVrRlMrelGL 52
                rV+ ++r++G+
  CTQ27749.1 23 RVEEVCRKMGI 33
                9*********9 PP

  == domain 2  score: 41.6 bits;  conditional E-value: 1e-13
      HTH_21   3 ddallalireifeeskgrYGyrriwaeLrreggvrvnhkrVrRlMrelGLrgvqrrk 59 
                 d+a+  +irei e +  rYG +ri+ +Lrreg+ +vnhk+ +R++  +GL  + +r 
  CTQ27749.1 130 DRAITLRIREIAETR-IRYGCPRIHIQLRREGW-PVNHKKTHRIYCLEGLNLRKKRP 184
                 3346778******97.8**************76.7***************6654443 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   4.3e-09   4.1e-06      10      41 ..      11      45 ..       5      57 .. 0.84
   2 ?    4.3   0.8      0.04        37       6      40 ..      92     127 ..      88     134 .. 0.80
   3 ?   -0.1   0.1      0.96     9e+02      34      44 ..     331     341 ..     329     347 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 4.3e-09
      HTH_23 10 illllae...GlsvreIAreLgvsrrTvyrwlkry 41
                i+ +l++   G +v+e++r++g+s+ T y+w+k++
  CTQ27749.1 11 IAFALKQaetGTRVEEVCRKMGISEATFYNWKKKF 45
                5555555556************************9 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.04
      HTH_23   6 eRlrillllae..GlsvreIAreLgvsrrTvyrwlkr 40 
                 ++ ++++ l+e  ++svr+ + +L +  rTvy+w +r
  CTQ27749.1  92 QKRQAVHFLREayRISVRRGCGLL-MQSRTVYHWQSR 127
                 566778888877888888888888.889******998 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.96
      HTH_23  34 vyrwlkryree 44 
                 +++w++ y+ e
  CTQ27749.1 331 LDNWRREYNHE 341
                 589*****865 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.5e-07   0.00014       5      36 ..      14      45 ..      11      49 .. 0.91
   2 ?    1.7   0.2       0.3   2.9e+02      26      36 ..     118     128 ..     114     133 .. 0.87
   3 ?   -1.3   0.1       2.6   2.5e+03      39      52 .]     172     185 ..     170     185 .. 0.85
   4 ?   -0.5   0.0       1.5   1.4e+03      29      41 ..     331     343 ..     328     349 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.5e-07
      HTH_28  5 iikllaaGhsvreaArelgisrrtvyrWikry 36
                ++k++  G +v e++r++gis+ t y W k++
  CTQ27749.1 14 ALKQAETGTRVEEVCRKMGISEATFYNWKKKF 45
                778888899*********************99 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.3
      HTH_28  26 rrtvyrWikry 36 
                 +rtvy W +r 
  CTQ27749.1 118 SRTVYHWQSRR 128
                 69*****9985 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.6
      HTH_28  39 gGiagLvprrrrpr 52 
                 + ++gL+ r++rpr
  CTQ27749.1 172 YCLEGLNLRKKRPR 185
                 67899999****98 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 1.5
      HTH_28  29 vyrWikryeegGi 41 
                 +  W++ y+++  
  CTQ27749.1 331 LDNWRREYNHERT 343
                 668******9875 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.5e-06    0.0043      15      48 ..      23      56 ..      20      62 .. 0.87
   2 ?    5.4   0.1     0.018        17      25      40 ..     116     131 ..      92     145 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.5e-06
  Terminase_5 15 rvaeIAeelglkeatVysWkkrdewddldplsrv 48
                 rv e+ + +g++eat y+Wkk+++  ++++l r 
   CTQ27749.1 23 RVEEVCRKMGISEATFYNWKKKFGGMSVTKLRRL 56
                 899********************99888888775 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.018
  Terminase_5  25 lkeatVysWkkrdewd 40 
                  ++ +tVy W +r   +
   CTQ27749.1 116 MQSRTVYHWQSRRDDR 131
                  4599*****9875544 PP

>> rve_2  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   4.3e-08   4.1e-05       1      47 [.     305     355 ..     305     359 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 4.3e-08
       rve_2   1 EsfFgsLKtElvygetfktleeleaaiedYIewYNnkR....lkglsPvqY 47 
                 Es  gsL++E+++   f +le ++ ++++  + YN++R    l  ++P+++
  CTQ27749.1 305 ESLNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERthssLNDMTPAEF 355
                 7888**********************************666666*****99 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.3e-07   0.00012       4      36 ..      14      45 ..      12      57 .. 0.90
   2 ?   -1.3   0.1       2.4   2.2e+03      27      35 ..     119     127 ..     116     139 .. 0.83
   3 ?   -1.5   0.3       2.8   2.6e+03      49      63 .]     180     194 ..     174     194 .. 0.62
   4 ?   -1.8   0.0       3.4   3.2e+03      27      40 ..     329     342 ..     328     347 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.3e-07
      HTH_29  4 allllaeGvstvsqiAkllglsrrtvyrwlkrf 36
                al  ++ G  +v ++++ +g+s+ t+y+w+k f
  CTQ27749.1 14 ALKQAETGT-RVEEVCRKMGISEATFYNWKKKF 45
                667778888.8********************98 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.4
      HTH_29  27 rtvyrwlkr 35 
                 rtvy+w+ r
  CTQ27749.1 119 RTVYHWQSR 127
                 8*****977 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.8
      HTH_29  49 rsgrprnrlseeqea 63 
                 r++rpr+ +s++ ++
  CTQ27749.1 180 RKKRPRRHVSAAHRQ 194
                 335666647888876 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 3.4
      HTH_29  27 rtvyrwlkrfeegG 40 
                 ++ ++w++ ++ ++
  CTQ27749.1 329 DKLDNWRREYNHER 342
                 56789***999885 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.4e-05     0.013      28      49 ..      23      44 ..       2      70 .. 0.86
   2 ?    2.9   0.1      0.12   1.1e+02       7      50 ..      85     128 ..      79     145 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-05
                 -HHHHHHHHTS-HHHHHHHHH- CS
  HTH_Tnp_1_2 28 tldeiaeevgvsrsTlykWkkk 49
                  ++e+++++g+s++T+y+Wkkk
   CTQ27749.1 23 RVEEVCRKMGISEATFYNWKKK 44
                 4789****************87 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.12
                  H..S-HHHHHHHHHHHHHHH--S-HHHHHHHHTS-HHHHHHHHH-H CS
  HTH_Tnp_1_2   7 e..LtakQkkaaellvendyekltldeiaeevgvsrsTlykWkkkk 50 
                  +  L  +Qk+ a     + y + +++  +  + ++ +T y+W++ +
   CTQ27749.1  85 KkvLRPAQKRQAVHFLREAY-RISVRRGCGLL-MQSRTVYHWQSRR 128
                  33388899999988889999.99999888766.677899***8544 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.1e-05      0.03       1      53 [.      27      80 ..      27      81 .. 0.87
   2 ?    2.0   0.0      0.28   2.6e+02      19      32 ..     347     360 ..     337     363 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.1e-05
                HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHS.SS---HHHHHH CS
      HTH_18  1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLle.ntglsvaeiAl 53
                +++++g+s+ t++   k++ g+++++++r + le+  ++L +  ++ls+++++l
  CTQ27749.1 27 VCRKMGISEATFYNWKKKFGGMSVTKLRRLRQLEEENQRLKRlVADLSLDKVML 80
                599********************************9999965446777777765 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.28
                 HTSS-HHHHHHHHH CS
      HTH_18  19 vlgltpkeylrrlR 32 
                    +tp+e++r+lR
  CTQ27749.1 347 LNDMTPAEFIRNLR 360
                 5579********99 PP

>> DDE_Tnp_IS240  DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.3     5e+03      96     110 ..      56      70 ..      35      75 .. 0.71
   2 !   15.9   0.0   1.2e-05     0.012      44     139 ..     248     344 ..     218     345 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.3
  DDE_Tnp_IS240  96 nnriEsdhrtlKkrl 110
                      ++E+++++lK+++
     CTQ27749.1  56 LRQLEEENQRLKRLV 70 
                    346788888888876 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.2e-05
  DDE_Tnp_IS240  44 akaflrkalkkeklepeeivtDkasay.asalkelkregelfdevshvqvkylnnriEsdhrtlKkrlrptrgfkslksaaktlagfeavknlrkg 138
                    +  +++++    k+ p+ i tD  s +  + l++   +   + + s+  ++  n  iEs +  l++++  +++f sl+ a+  l+ +   +n+ ++
     CTQ27749.1 248 VVGVMERLRVLGKRLPVRIQTDNGSEFiSKSLDKWAYQHGVTMDFSRPGKPTDNPFIESLNGSLRDECLNIHWFLSLEDAQDKLDNWRREYNHERT 343
                    55667777777778899999986665526788888888888899999999*********************************************9 PP

  DDE_Tnp_IS240 139 h 139
                    h
     CTQ27749.1 344 H 344
                    9 PP

>> HTH_Tnp_IS630  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4   2.3e-05     0.021      13      68 ..      16      73 ..       6     101 .. 0.74
   2 ?    2.1   0.2       0.2   1.9e+02      32      52 ..     118     138 ..      95     146 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.3e-05
  HTH_Tnp_IS630 13 dyiesGggitkaskvfkvgratvyrWlkreelaatkvetrkrkid..rkelkedvkkn 68
                   +  e+G  ++++ +  +++ at y+W k+    ++   +r r+++  +++lk+ v + 
     CTQ27749.1 16 KQAETGTRVEEVCRKMGISEATFYNWKKKFGGMSVTKLRRLRQLEeeNQRLKRLVADL 73
                   5679**********************99987666655666666651155677666554 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.2
  HTH_Tnp_IS630  32 ratvyrWlkreelaatkvetr 52 
                     +tvy+W  r++  a+  + r
     CTQ27749.1 118 SRTVYHWQSRRDDRAITLRIR 138
                    69********99888766554 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00012      0.11      44      60 ..      24      40 ..       4      41 .. 0.79
   2 ?   -0.4   0.1       1.4   1.3e+03      14      34 ..      84     102 ..      72     104 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
      HTH_22 44 vekvAekLgiSraTvYr 60
                ve+v++k+giS+aT Y+
  CTQ27749.1 24 VEEVCRKMGISEATFYN 40
                99**************8 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.4
      HTH_22  14 gkpverltkeekieivraLde 34 
                 +k  + l  ++k+++v  L e
  CTQ27749.1  84 SK--KVLRPAQKRQAVHFLRE 102
                 33..4789999*****99987 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00011      0.11       4      21 ..      24      41 ..      23      60 .. 0.83
   2 ?   -2.2   0.0       5.1   4.8e+03      13      34 ..      75      95 ..      73     103 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      HTH_17  4 veEaAelLgvsrstvyrl 21
                veE+++  g+s++t y++
  CTQ27749.1 24 VEEVCRKMGISEATFYNW 41
                9****************9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.1
      HTH_17 13 vsrstvyrlirrgelpaakiGr 34
                + + ++++ ++++ l++a + +
  CTQ27749.1 75 LDKVMLRK-LSKKVLRPAQKRQ 95
                55666666.6799999995534 PP

>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00019      0.18       5      25 ..      23      43 ..      22      46 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
  Phage_AlpA  5 rlreVeqktglsrstiYrlik 25
                r++eV+ k+g+s++t Y++ k
  CTQ27749.1 23 RVEEVCRKMGISEATFYNWKK 43
                889***************976 PP

>> DUF1492  Protein of unknown function (DUF1492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0002      0.19      74      94 ..      24      44 ..      17      47 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0002
     DUF1492 74 vwqvidklnisrstyyrllrv 94
                v +v+ k++is++t+y ++++
  CTQ27749.1 24 VEEVCRKMGISEATFYNWKKK 44
                689***************975 PP

>> GP3_package  DNA-packaging protein gp3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00032       0.3      45     104 ..      24      85 ..       6      93 .. 0.81
   2 ?   -2.6   0.1       6.2   5.8e+03      57      82 ..     119     143 ..     114     146 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00032
                  HHHHHHHHT--HHHHHHHGG..SHHHHH.HHHHHHHH.HHHHHHHHHTTSS-HHHHHHHH.. CS
  GP3_package  45 vtGLalyLgisrstlkeyekrkrefset.ierikqiv.enqqiegalagefnativalllsn 104
                  v+ +++ +gis+ t+++++k+   +s t + r +q+  enq++++++a+ + ++++ ++ls+
   CTQ27749.1  24 VEEVCRKMGISEATFYNWKKKFGGMSVTkLRRLRQLEeENQRLKRLVADLSLDKVMLRKLSK 85 
                  556899**************88755544377777775367899*****99999999888865 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.2
                  HHHHHHGG..SHHHHHHHHHHHHHHH CS
  GP3_package  57 stlkeyekrkrefsetierikqiven 82 
                  +t++ +++r  +   ++ ri++i e+
   CTQ27749.1 119 RTVYHWQSRR-DDRAITLRIREIAET 143
                  6788888866.778888899999887 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.6    0.0011      0.99      32      62 ..      55      85 ..      50      89 .. 0.87
   2 ?   -2.6   0.1       5.2   4.9e+03      45      50 ..     354     359 ..     324     364 .. 0.47

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0011
                HHHHHHHHHHHHHHHHCC-XXXXXXXXXXXX CS
       DivIC 32 elaklkaeneeLeaevkdLksdedyieerAR 62
                 l +l +en++L++ v+dL+ d+ ++++  +
  CTQ27749.1 55 RLRQLEEENQRLKRLVADLSLDKVMLRKLSK 85
                6899***************77****999876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.2
                 HHHCC- CS
       DivIC  45 aevkdL 50 
                 + +++L
  CTQ27749.1 354 EFIRNL 359
                 234444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2799.99
//
Query:       CTQ27750.1  [L=123]
Description: Maltose transport system permease protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1096.99
//
Query:       CTQ27751.1  [L=45]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 349.96
//
Query:       CTQ27752.1  [L=53]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 444.54
//
Query:       CTQ27753.1  [L=402]
Description: putative structural protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3219.23
//
Query:       CTQ27754.1  [L=1168]
Description: putative membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-67  228.8   8.4    1.9e-67  228.0   8.4    1.4  1  IcmF-related     Intracellular multiplication and human macro
    1.9e-53  181.1   1.9    4.4e-53  179.9   1.9    1.7  1  IcmF_C           Type VI secretion protein IcmF C-terminal
  ------ inclusion threshold ------
       0.25   11.3   2.9        3.8    7.5   0.2    3.1  3  T3SS_needle_reg  YopR, type III needle-polymerisation regulat


Domain annotation for each model (and alignments):
>> IcmF-related  Intracellular multiplication and human macrophage-killing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.0   8.4   3.1e-71   1.9e-67       1     308 [.     442     759 ..     442     760 .. 0.95

  Alignments for each domain:
  == domain 1  score: 228.0 bits;  conditional E-value: 3.1e-71
  IcmF-related   1 LpaLdalrdlleqlldyreeepplslrfGLyqgdkleaalraaYraalrqlllpplaarleaeLravaaap........dpeeayeaLKvYlMLsdp 89 
                   L aL+alr+ + +l ++ ++++p++ rfGL + ++l++a+ + Y  a ++l+++p+ a+l++ L+a+++ +         ++ +y++LK++lM+++p
    CTQ27754.1 442 LTALHALRNEAGRLVHDGQKGAPWYRRFGLDHHQQLLNAVLPWYGVANHRLIRDPANAALQQALSALVNSApnsdqrarLAKPGYDQLKAWLMMARP 538
                   679***************************************************************999889******99***************** PP

  IcmF-related  90 erldaafladwltrdweralegergeqer..erllehldallaakr..aiaalspldealVaqaRaaL....rrvplaervYarlkaraeasar.pp 177
                   +++d af+a+ +++    ++   +g  ++  ++l++++ +ll +++  +i +    d++ V+q+R+ L    +r +++ ++Y+++++++  +++ ++
    CTQ27754.1 539 DKADGAFFAQTMKTVQPTRMGISTGLWQSlaPDLWAFYLSLLPERPewKIIP----DAQRVSQSRQVLlqqlGRRNAESTLYENMLKSV--RRNfAD 629
                   ************8888777777777666699***********9866788888....**************99*****************..8888** PP

  IcmF-related 178 vtladlv.GpdaaevftrsspltegvpglfTrkGyeevflkaldeaaeklleeddWVlgdltes.sseaspeqlakelrelYftdYaaeWqafLndl 272
                   v+l+d++ G+da+++ft+++    +vpg+fTr+++e+ +++a+d+aa++++ee dWVl+d+ +  s++ spe+l+++l+++Yftd+a  W +fLn+l
    CTQ27754.1 630 VSLEDMTsGTDARRLFTTDE----VVPGMFTRQAWEGGIQQAIDKAASSRREEIDWVLSDSRKTvSTDLSPEALKARLTRRYFTDFAGSWLNFLNSL 722
                   *******************9....***********************************777777789***************************** PP

  IcmF-related 273 rvkpfaslaqavealrllsdpd.sPlrrllqavadet 308
                   r++p++++a+ +++l+l+sd + sPl +l++++a++ 
    CTQ27754.1 723 RLNPATNIADVTDQLTLISDVRqSPLIALMNTLAWQG 759
                   **********************************996 PP

>> IcmF_C  Type VI secretion protein IcmF C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.9   1.9   7.3e-57   4.4e-53       2     203 .]     893    1090 ..     892    1090 .. 0.97

  Alignments for each domain:
  == domain 1  score: 179.9 bits;  conditional E-value: 7.3e-57
      IcmF_C    2 elleelaeqawrlvlksaraqlnrawqaevyepcqqalagrYPFarsssrdvsladfarffgpg.GlldkFfqkqLapfvdtsgntwrprqendkgl 97  
                  +l++++++qaw++vl +++a+ln++w++ v+ ++++a++gr+PFa+ s++d+sl+ +a+f +++ G +++F++++L+++++++g++w+p++ n++gl
  CTQ27754.1  893 TLFVQPLTQAWETVLLPSAASLNDKWRRSVVANWHTAFDGRFPFAA-SKSDASLPMLAEFVRKDsGRIERFLTTELNGVLHKEGSQWVPDKVNSHGL 988 
                  6899*****************************************9.************************************************** PP

      IcmF_C   98 glspaflkqfqraarirdalfagggepsvefeirplplsagvtelkleidgqklryrhgpsawvelsWPgaasatgrarltltpdasggspstleae 194 
                   ++pafl++++++++++d+lf+ +g+ +++fe++++p +++v+e++l+idgqklry ++++ w++++WPg++ ++g + lt+t+  + g++   +++
  CTQ27754.1  989 VFNPAFLRAINQLSQLSDILFT-DGSQGISFELQARP-APEVVETQLTIDGQKLRYFNQMADWQTFRWPGETYKPG-TLLTWTTV-NAGTRLFGDYS 1081
                  **********************.88899*********.*********************************99888.*****885.7888999**** PP

      IcmF_C  195 GpWalfRLl 203 
                  G W+++R+l
  CTQ27754.1 1082 GTWGFIRWL 1090
                  *******97 PP

>> T3SS_needle_reg  YopR, type III needle-polymerisation regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.24   1.4e+03      31      89 ..     572     629 ..     569     633 .. 0.87
   2 ?    1.9   0.0     0.033     2e+02       8      70 ..     657     717 ..     654     741 .. 0.73
   3 ?    7.5   0.2   0.00064       3.8      12      76 ..     838     901 ..     828     927 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.24
                      HHHHHHH...-SS--HHHHHH.HHHHHHHHHHHHHTT--S---HHHHHHHHHHHHHHHS- CS
  T3SS_needle_reg  31 lWqayqalkskkpsddavlev.LlapvkeeLladfgglqgsvkPplDlpeLrkvlrqfap 89 
                      lW  y  l  ++p  + ++++  ++  ++ Ll + g    +++ +l    L++v r+fa 
       CTQ27754.1 572 LWAFYLSLLPERPEWKIIPDAqRVSQSRQVLLQQLGR--RNAESTLYENMLKSVRRNFAD 629
                      7999999999999999999998899999******999..788999999999999888875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.033
                      .......XXXXXXXX-HHHHHHHHHHHHHH...-SS--HHHHHHHHHHHHHHHHHHHTT--S- CS
  T3SS_needle_reg   8 kqsvlssLenvlkdedpetqrevlWqayqalkskkpsddavlevLlapvkeeLladfgglqgs 70 
                      +q +  ++++ +++  + ++ e+ W      + k  s d  +e+L a +  + ++df+g  ++
       CTQ27754.1 657 RQAWEGGIQQAIDKAASSRREEIDWVLS-D-SRKTVSTDLSPEALKARLTRRYFTDFAGSWLN 717
                      6888888899998555555555555543.3.3578889999*****************97554 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00064
                      ...XXXXXXXX-HHHHHHHHHHHHHH...-SS--HHHHHHHHHHHHHHHHHHHTT--S---HHHH CS
  T3SS_needle_reg  12 lssLenvlkdedpetqrevlWqayqalkskkpsddavlevLlapvkeeLladfgglqgsvkPplD 76 
                         L++v +  dp++  +vl q+  + ks + +d  +   L++    e ++ fg+  + v+P + 
       CTQ27754.1 838 RLRLQQVANASDPQEMMQVLAQTVFQGKSVDLTDTQQYGSLISASLGEEWSGFGN-TLFVQPLTQ 901
                      4458999999*********************************999999*****9.899998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 7613.44
//
Query:       CTQ27755.1  [L=532]
Description: Type VI secretion-associated protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-73  247.8   8.3    2.4e-73  246.8   8.3    1.6  1  T6SS_VasJ  Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A011
    1.3e-23   83.3   0.2    6.2e-23   81.2   0.0    2.3  2  ImpA_N     ImpA, N-terminal, type VI secretion system
  ------ inclusion threshold ------
        1.3    8.7   3.4         25    4.6   0.5    2.7  2  THB        Tri-helix bundle domain


Domain annotation for each model (and alignments):
>> T6SS_VasJ  Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.8   8.3     4e-77   2.4e-73       1     253 [.     229     488 ..     229     490 .. 0.94

  Alignments for each domain:
  == domain 1  score: 246.8 bits;  conditional E-value: 4e-77
   T6SS_VasJ   1 isseralkqqlrkvaellreqdpadlaayrlrRaarWdsitslPpadaegrTrlaapsadrvaeykrllkqgewaelleeaEaslteap..fwLDlqrl 97 
                 i+s+++l++q+r+++++lr q+ ++laa+rl++++r+d++t  P  daeg+Tr+++p+ad++a +krl+ q++w+e+le+a++++++++  +wLDlq++
  CTQ27755.1 229 ITSGQDLLAQARTLTAYLRVQPDGWLAAHRLMKSLRHDTLTIIPAPDAEGKTRIEPPRADQRAMLKRLYLQQSWSEILEQADSTFSRGAnhLWLDLQWY 327
                 5799*********************************************************************************************** PP

   T6SS_VasJ  98 aaqalaklgeyadaaeaieeelaalLarlPgLeeLsFsDgtPFadeetraWlaeea.......aseavaesaatsesadedl....aealelaaeegle 185
                  +qal + g ++ +a+ i ++l+ lL rl gLe+L+F+DgtPFade t++W+++ +       + e+v++ + + ++         +eale a+++gl+
  CTQ27755.1 328 IHQALVRSG-QDVLADIIIADLKGLLRRLTGLETLAFNDGTPFADEVTLNWINQSVlddmsvwQDEPVSAASGADND----IlalePEALEKADTDGLD 421
                 *********.9*********************************************998766655555555544444....34566************* PP

   T6SS_VasJ 186 aalsllqqalaratspRerflwrlllarlleqagkhelAlalleeldeqieelsLeeWePeLalrvea 253
                 aal+++q++++  +s +e++l+rll+ar++eq+gk++lAl ll+eld  + +++L++W P+L+++++ 
  CTQ27755.1 422 AALHWIQTRPG-TESTKEKWLLRLLMARVAEQKGKNDLALYLLRELDDAAGSITLTQWIPALLFEIKS 488
                 ***********.9****************************************************986 PP

>> ImpA_N  ImpA, N-terminal, type VI secretion system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0     1e-26   6.2e-23       1     118 [.      33     137 ..      33     138 .. 0.96
   2 ?   -1.6   0.0      0.46   2.7e+03      40      70 ..     299     330 ..     272     351 .. 0.72

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 1e-26
      ImpA_N   1 lapisddspcGedlrydpefdaleearnkarsdqsieakaadWkkveelaeelleerskDLrvavwlteallrleglaglaeglellaelleryWdelh 99 
                 lapisd +p+G+d+ yd +f++++e++nk +         +d   + +la +ll +++kD+r++++++ a+l+++g agla+glella+ll+ry  +l+
  CTQ27755.1  33 LAPISDSQPTGSDPGYDDDFQRIREEVNKIS--------GVDTVLICQLAGQLL-ATTKDIRIVTYYCWARLHQDGEAGLADGLELLAGLLQRYGMQLY 122
                 79****************************4........5999***********.******************************************** PP

      ImpA_N 100 PaldeddleaRvnalawLv 118
                 P+ d      R +al+wL+
  CTQ27755.1 123 PQRD----RSRKAALEWLA 137
                 **98....57*******97 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.46
      ImpA_N  40 aadWkkveelaeelleerskDLrv.avwltea 70 
                 ++ W+++ e+a + +++    L++ + w+++ 
  CTQ27755.1 299 QQSWSEILEQADSTFSRGANHLWLdLQWYIHQ 330
                 67899999999998877667776645555554 PP

>> THB  Tri-helix bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1    0.0067        40      25      33 ..     288     296 ..     287     297 .. 0.91
   2 ?    4.6   0.5    0.0042        25      23      33 ..     345     355 ..     345     356 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0067
         THB  25 DlRGmLkrL 33 
                 D R+mLkrL
  CTQ27755.1 288 DQRAMLKRL 296
                 88******9 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0042
         THB  23 itDlRGmLkrL 33 
                 i Dl G+L+rL
  CTQ27755.1 345 IADLKGLLRRL 355
                 78********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4044.25
//
Query:       CTQ27756.1  [L=206]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.4e-10   38.7   3.3    1.9e-09   37.6   3.0    1.7  2  PAAR_motif  PAAR motif


Domain annotation for each model (and alignments):
>> PAAR_motif  PAAR motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   3.0     1e-13   1.9e-09       2      63 ..      11      74 ..      10      84 .. 0.90
   2 !    6.4   0.4   0.00056        10      11      41 ..      52      83 ..      51      97 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1e-13
                -BTTB---BB-----SEEETTEEB-BTT-BB...--E..--B----SSEEETTEEB-BTT-BBT CS
  PAAR_motif  2 GdkthhgGpiipgsptvliggkpaArvgdsvvCppck..gaiakgsstvligGkpaArvgdkta 63
                Gd t++gG+i++g++ ++   kp+Ar  dsv+C ++   ++ia g ++ +i G+ +A   d ++
  CTQ27756.1 11 GDRTTCGGRITTGAEDHTLFDKPVAREQDSVTCGKHAglYKIAGGIDNDTIHGRRMAGTLDSCS 74
                9*********************************977********************9999886 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00056
                B-----SEEETTEEB-BTT-BB....--E.--B CS
  PAAR_motif 11 iipgsptvliggkpaArvgdsvv.Cppck.gai 41
                i  g  + +i+g+ +A   ds++ Cp ck + i
  CTQ27756.1 52 IAGGIDNDTIHGRRMAGTLDSCStCP-CKaKFI 83
                556778899*************9999.665445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1668.82
//
Query:       CTQ27757.1  [L=82]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   14.9   0.1       0.04   14.2   0.1    1.3  1  Ntox44    Bacterial toxin 44


Domain annotation for each model (and alignments):
>> Ntox44  Bacterial toxin 44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.2e-06      0.04      65      99 ..       1      34 [.       1      35 [. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-06
      Ntox44 65 lkgaglaqiltnakkstgddpeDkka.ikiGinlyd 99
                +kg++++q +t   +  gdd++D+++ +kiG+nl+ 
  CTQ27757.1  1 MKGSTWEQNMTPGAM--GDDTMDDITsMKIGFNLFY 34
                68*********9777..9998888877******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 734.80
//
Query:       CTQ27758.1  [L=156]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1239.69
//
Query:       CTQ27759.1  [L=584]
Description: Type VI secretion protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.5e-183  609.8   0.1   6.1e-183  609.6   0.1    1.0  1  T6SS_TssF  Type VI secretion system, TssF


Domain annotation for each model (and alignments):
>> T6SS_TssF  Type VI secretion system, TssF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  609.6   0.1  3.4e-187  6.1e-183       1     602 [.       1     580 [.       1     581 [. 0.97

  Alignments for each domain:
  == domain 1  score: 609.6 bits;  conditional E-value: 3.4e-187
   T6SS_TssF   1 mddellryYerELaylreagaefAeeyPkiAarlgldgeeveDPhVeRLlegfAflaaRiqqklddefpelteaLlevlyPhylapiPSmavvqlepdp 99 
                 mdd +lryY++E++yl eag+efA+++P+ Aa+l+ld+ +++DP+VeRL+egfAfl++R+++kldd++pelte+++++l+Phyl++iPSm+vv+++pd 
  CTQ27759.1   1 MDDLTLRYYDAEMRYLLEAGEEFARAHPEQAAMLNLDKAGARDPFVERLFEGFAFLMGRMREKLDDDLPELTEGVVSLLWPHYLRTIPSMSVVEFTPD- 98 
                 99************************************************************************************************. PP

   T6SS_TssF 100 eegslaegftvprgtelesrpsegegtrcrFrtaqdvtLwPleiaearltsapaalpaaalaaaaaavlrlrLelt.gvsfaeldldrLrlyLagdeel 197
                  +++++e++t+++g e+ srp +++gtrcr++t++++ L+Pl+++ ++l ++++++++          ++lr++++  ++++ +dl++++ly+++d++l
  CTQ27759.1  99 -WPEMKEPMTMAKGFEVLSRPIGEKGTRCRYTTTKAIALQPLSLERVQLATDTDGRSV----------ITLRFTCSqLTDWRRVDLSHIPLYCNADAPL 186
                 .********************999*********************************8..........********87899****************** PP

   T6SS_TssF 198 asaLyelLlahvkavvvrdpgedeervvlpasalrpvGfdddeallpyeersfsgyrllqEyfafpekflFfdlsglqellarlageelelillldrad 296
                 a+a++e+ + +v+++++r p+e  +r++l++  +++ Gf++d++l+p++ rsf gy+ll Eyf+f+ekf+F+dl gl++++++++  ++e+ ++l++++
  CTQ27759.1 187 ACAMHEAFTLNVARMWLRMPDEV-DRRPLDG-YFSALGFGEDDGLWPEDGRSFRGYQLLLEYFTFREKFMFIDLRGLETVAFPAGLAWFEIDVVLAERW 283
                 ******************99986.9999999.7****************************************************************** PP

   T6SS_TssF 297 peleeavsaesfaLnctPviNLFekraepieldpteteyplvpdrsrpldyeiysvdeVegsgeegeeaefrpfyalr.....adgeapgayytvrrep 390
                 ++ + ++s+++++L+c+PviNLF ++++p++++  +teypl+p+r +++++eiy vd+V +s+    ++ ++pf+++r      +++a+  yy++r ++
  CTQ27759.1 284 EH-DFRFSEKQLRLHCVPVINLFLLESDPLTINSLQTEYPLRPMRVQDGHTEIYTVDSVISSH----QQVYAPFSSFRhkggmMRHDAADYYYHTRVRR 377
                 **.*********************************************************877....57888999999999998889999********* PP

   T6SS_TssF 391 relsdrrnrrgtevflslvdrdeap.aeedleqlsiellctNrdlpel.lpvggstdltleesapvervrnlraptaprapplegelaWrlishlslny 487
                      ++++   +++l+++++++++   +++e+ls++l+ tN++lp++ l+++  +++   +s +   vrnl+apt p++pp++++++Wr++shl + +
  CTQ27759.1 378 -----GPSGL-YNTWLIVGGEAFDNhTVPEDESLSLTLTGTNGQLPRRaLQSTVLDTVMKTTS-ASIAVRNLCAPTLPCYPPAQERFHWRVLSHLGSSF 469
                 .....99999.8*************899********************888876666666666.5556******************************* PP

   T6SS_TssF 488 lsltdggaeaLrellrlyafrddaatrrqidgivsvslrpvtrrvpgkgglvfarGveitltldesafeges.vylfgavLerffaryasinsftqlvl 585
                 lsl+d+ ae Lr++l+ly ++d++++rr++++i +v++r++ r+    +g  ++rGv+i++tld+++f+g + ++lfg++L+rffa+y++i+ f +l +
  CTQ27759.1 470 LSLMDN-AEVLRGTLALYEWTDSEMNRRRLEAILDVKHRATERFA---QG-HLVRGVQIEVTLDSHGFAGRGdICLFGEMLSRFFALYTDIYLFNRLII 563
                 *****9.**************************************...66.89********************************************** PP

   T6SS_TssF 586 rsqqrgeiarwpprags 602
                 ++q++ge ++w++ + +
  CTQ27759.1 564 ILQPTGERLEWEEKHSR 580
                 ************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4150.66
//
Query:       CTQ27760.1  [L=359]
Description: Type VI secretion protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-67  226.9   0.0    3.8e-67  226.6   0.0    1.1  1  T6SS_TssG  Type VI secretion, TssG


Domain annotation for each model (and alignments):
>> T6SS_TssG  Type VI secretion, TssG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.6   0.0   2.1e-71   3.8e-67       3     299 .]      21     320 ..      19     320 .. 0.94

  Alignments for each domain:
  == domain 1  score: 226.6 bits;  conditional E-value: 2.1e-71
   T6SS_TssG   3 hrfdffqavrll..erpeseplgeaarprdepvrfrqapslafpaseiasieara..eee.ryrvevnflGLlGpnGpLPlhyteelleerreddealr 96 
                  r++f+++++ll  +rp ++ +g +++p+d+pvrf ++p ++fpase++++e+++  + + ++ ++++f+GL+G+++pLP++y+++++ ++re++eal+
  CTQ27760.1  21 PRINFYRFCQLLekRRPGQPLMGGTSHPADDPVRFYPHPGMGFPASELKAVEYDEadD-SrPPVIRTTFMGLYGVDSPLPTAYLDDIA-QHREGHEALQ 117
                 689*********6666666699*****************************9988633.369**************************.9********* PP

   T6SS_TssG  97 aFlDiFnhRllslfyrawakyrlavslerpaedrfsqyllaLvGlgspalrrr.alpdeallayagllarrtrsaegLeailsdyfgv.pveveefvgr 193
                  +lDiF+hR++++fyr+w+ky+ ++++e +++dr+sq ll L+Glg p+++++ a p  ++la+ g+l+++ ++ +g++a++  +     v+v ++  r
  CTQ27760.1 118 GLLDIFSHRIMTQFYRIWRKYSWPATFEPGGTDRLSQSLLGLAGLGIPGTTQHiASPASRFLALTGVLRQPGKTQQGIQALVTLLAPEtTVRVSPYSLR 216
                 ************************************************999998888889***********************444437********** PP

   T6SS_TssG 194 wveipeaqrtrlgaqnarLGedavlGsrvwdrqskfrirlgplsldeyrrllpggealraLaalvrfylgeeldvdleLvlkreevpparLgeeeaarL 292
                  v i+++     g     L+ ++ lG++++d++s++ + l++ + +e++ + p+g+ +r +  l+r ylg+++ + + L+ +++ +  + Lg +e++ L
  CTQ27760.1 217 PVAISQPL-GFYGDDDFFLDGNTPLGDEAMDASSQLLVALTTDNPAEAQGWKPDGPLFRDFLILLRVYLGWRFRANITLTAPTRLLAVPPLG-DEPFWL 313
                 *****993.34466889**************************************************************************6.88**** PP

   T6SS_TssG 293 GwtswLg 299
                 G++++Lg
  CTQ27760.1 314 GMNGVLG 320
                 ***9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       160  (0.00892409); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2772.46
//
Query:       CTQ27761.1  [L=180]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-29  101.8   0.1    2.4e-29  101.5   0.1    1.1  1  T6SS-SciN  Type VI secretion lipoprotein, VasD, EvfM, TssJ, V


Domain annotation for each model (and alignments):
>> T6SS-SciN  Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.1   1.4e-33   2.4e-29       2     114 ..      47     164 ..      46     175 .. 0.90

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 1.4e-33
                 EEEEEEEE-TT-S--T.TS-..---EEEEEEEES--HHHHHS-HHHHHHSHHHHHGGGEEEEEEEEE-TT-EEEEEEEE-TT--EEEEEE--S-GG..G CS
   T6SS-SciN   2 tldltleaaadlNpde.egr..psPvvvrvyqLkddsaFeqadffslqdddkeaLgadlvavkevvlrPgetrelslkldeearyvGvvaayrdld..k 95 
                 tl+l+++a+++lN+d+ e++  ++Pvvvr+yqLkd+++F+++ +++l ++ +  L+adl+a+++vv+ Pg +++l+++l++ea++v+vv ++r++d  +
  CTQ27761.1  47 TLHLDFTAREALNTDArENHslSEPVVVRIYQLKDRQTFDRLVYQQLLEEGDILLAADLLASRDVVIGPGGDASLNMPLEAEATFVAVVGLFRHPDtqR 145
                 89*************9433311557***********************************************************************999 PP

                 -B-EEEEE--TTS.EEEEE CS
   T6SS-SciN  96 arwrlvlkipekkekkklk 114
                 ++w++vl ++e +++k++ 
  CTQ27761.1 146 NTWKQVLAREELDPDKPRI 164
                 ***********99876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1434.01
//
Query:       CTQ27762.1  [L=164]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.084   13.1   0.0       0.14   12.4   0.0    1.3  1  CbbQ_C    CbbQ/NirQ/NorQ C-terminal


Domain annotation for each model (and alignments):
>> CbbQ_C  CbbQ/NirQ/NorQ C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.7e-06      0.14      14      49 ..      33      69 ..      25      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.7e-06
                HHHHHHHHHHHHHHTTBTT.TBSS---HHHHHHHHHH CS
      CbbQ_C 14 evakkLVklAneiRnlkeg.gLeegvSTRlLvyaAkL 49
                ++++++ +lA++i + ++g g+e+++STR L    +L
  CTQ27762.1 33 RFRQQMAALAQQISQWFDGtGIEVVISTRHLHDLSTL 69
                5689**********9988768*********9777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1253.12
//
Query:       CTQ27763.1  [L=237]
Description: putative oxidoreductase with NAD(P)-binding Rossmann-fold domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-52  178.7   0.1    1.7e-52  178.3   0.1    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.5e-44  151.8   0.0    1.8e-44  151.6   0.0    1.1  1  adh_short        short chain dehydrogenase
    4.5e-07   29.6   0.0    9.5e-07   28.5   0.0    1.6  1  Epimerase        NAD dependent epimerase/dehydratase family
    0.00031   20.7   0.1    0.00036   20.5   0.1    1.2  1  NAD_binding_10   NAD(P)H-binding
      0.001   19.6   0.1     0.0021   18.6   0.1    1.6  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
     0.0022   18.0   0.1     0.0031   17.5   0.1    1.3  1  KR               KR domain
  ------ inclusion threshold ------
      0.023   13.8   0.0      0.033   13.3   0.0    1.1  1  RmlD_sub_bind    RmlD substrate binding domain
       0.06   13.1   1.2        0.2   11.4   0.2    2.4  3  Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA 


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.3   0.1   7.7e-56   1.7e-52       3     231 ..      15     233 ..      13     235 .. 0.96

  Alignments for each domain:
  == domain 1  score: 178.3 bits;  conditional E-value: 7.7e-56
                   TTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdral 99 
                    +gIG+ai++++ + Ga+vv+++ +  +  ++e+la+e+g++++++D +d+++v +lv++     g lD+lv nagia    g++le + + +dr +
    CTQ27763.1  15 SRGIGAAIVRRFVADGASVVFSYSGSPE--AAERLAAETGSTAVQADSADRDAVISLVRD----SGPLDVLVVNAGIALF--GDALEQDSDAIDRLF 103
                   59*************************8..8********************999988876....89*************9..*************** PP

                   HHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSB.STTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHHH CS
  adh_short_C2 100 dvnlyslfllakaalplmkeggsivnlssvgaerv.vpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleelear 195
                    +n+++ ++ + +a++ m egg+i+ + sv + r+ +p+ +ay+ +K al++l+r lA+++gp+gi+vN+v pgpi+T+a+ +      ++e +++ 
    CTQ27763.1 104 RINIHAPYHASVEAARRMPEGGRIIVIGSVNGDRMpLPGMAAYALSKSALQGLARGLARDFGPRGITVNVVQPGPIDTDANPEN---GPMKELMHSF 197
                   ******************************999998******************************************997655...5899999999 PP

                   STTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEEST CS
  adh_short_C2 196 aplgrlgtpeevaeaalfLasdeasyitGqtlvvDg 231
                     ++r g+peeva ++++La +eas++tG+ + +Dg
    CTQ27763.1 198 MAIKRHGRPEEVAGMVAWLAGPEASFVTGAMHTIDG 233
                   ***********************************9 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.6   0.0     8e-48   1.8e-44       1     191 [.       7     188 ..       7     192 .. 0.96

  Alignments for each domain:
  == domain 1  score: 151.6 bits;  conditional E-value: 8e-48
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 k vlv G+s+GIG ai+++++++Ga+vv+ ++ s+e++e++a+e ++     +a+q+D +dr++v  lv++     g+ldvLv NAGi+ +g++ e ++
  CTQ27763.1   7 KSVLVLGGSRGIGAAIVRRFVADGASVVFsYSGSPEAAERLAAETGS-----TAVQADSADRDAVISLVRDS----GPLDVLVVNAGIALFGDALEQDS 96 
                 679**************************9**************996.....79**************9998....*********************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGG.TSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvag.kvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 ++++r++ +N++++++++ ++++ m   ++GrI+ ++Sv+g ++p++g+aaY+ sK a++gl+r la+++ p+gi+vn+v+PG++dTd + e  
  CTQ27763.1  97 DAIDRLFRINIHAPYHASVEAARRMP--EGGRIIVIGSVNGdRMPLPGMAAYALSKSALQGLARGLARDFGPRGITVNVVQPGPIDTDANPENG 188
                 ************************99..9************99*********************************************997765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   4.3e-10   9.5e-07       1     169 [.       9     173 ..       9     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 4.3e-10
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHH.T-SEEEE--S---HHHHHHSHHHHHHHHTHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..elveldltdrsalerlfkee.qpdavihlAavggvaassedpadfieknlqgtl 96 
                 +lV+G++  iG+a+v+++ + g  v+   + s + ++ + +++  + v++d  dr+a+  l+++    d+ +  A+++  ++  e+ +d i++ ++++ 
  CTQ27763.1   9 VLVLGGSRGIGAAIVRRFVADGASVVFSYSGSPEAAERLAAETgsTAVQADSADRDAVISLVRDSgPLDVLVVNAGIALFGDALEQDSDAIDRLFRINI 107
                 79*************************999988777777777799********************66677777788**********9999987777776 PP

                 HH.....HHHHHHHTCT..EEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
   Epimerase  97 nl.....leaarkagvk..rllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrl 169
                 +      +eaar+  ++  r++ ++S      ++     + +   pl+   +Ya++K a   l++ +a+++g + i++++
  CTQ27763.1 108 HApyhasVEAARRM-PEggRIIVIGS------VNG----DRM---PLPGMAAYALSKSALQGLARGLARDFGPRGITVNV 173
                 65211123333333.22236666666......333....345...77888899999999988888888888877777765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   1.6e-07   0.00036       1     102 [.      13     136 ..      13     196 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.6e-07
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-...SEEEES-......--TCC...HHHH...... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkga...daVvsal......ggggk...deeg...... 77 
                     G++ ++G ++v++ +a+g   v  +  +pe +++l+ae g ++v++d  d +++ + +++    d+ v+++              d+++      
      CTQ27763.1  13 GGSRGIGAAIVRRFVADGASVVFSYSGSPEAAERLAAETGSTAVQADSADRDAVISLVRDSgplDVLVVNAgialfgD---AleqDSDAidrlfr 104
                     8999*************85556667889******************************98755677665553555321...13334444666676 PP

                     ......HHHHHHHHHH.CT--EEEEEEETTTT CS
  NAD_binding_10  78 ......aknivdaake.agvkRfvlvsaigvg 102
                             + v+aa++  +  R++++++++ +
      CTQ27763.1 105 inihapYHASVEAARRmPEGGRIIVIGSVNGD 136
                     66677755567777663567788888887654 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   9.5e-07    0.0021       6      60 ..      14      62 ..       8      71 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.5e-07
                   TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHH CS
  F420_oxidored  6 GaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaae 60
                   G+  +g+a++++++a g    ++v+  s +pe ae la+e g ++ +   ++ a+
     CTQ27763.1 14 GSRGIGAAIVRRFVADG---ASVVFSYSGSPEAAERLAAETGSTAVQ---ADSAD 62
                   45569************...*********************977777...33333 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   1.4e-06    0.0031       3     161 ..       9     158 ..       7     175 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.4e-06
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 +l+ GG  g+G +++r  +++ga+ +   s s  +  +++++   l+a ++  ++v+aD +d+dav +l+++     +p+   +  Ag++  +   e++
  CTQ27763.1   9 VLVLGGSRGIGAAIVRRFVADGASVVFSYSGS--P--EAAER---LAA-ETGSTAVQADSADRDAVISLVRDS----GPLDVLVVNAGIALFGDALEQD 95 
                 79**********************99888888..2..22222...322.4445788999999**999999887....5999999999999999999999 PP

                 HHHHHHHHTTTTHHHHH..HHHHTTTS--SEEEEEEEHHH.HH--TT-HHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawn..LhelledesldffvlfSSiag.llgsagqanYaaaNaflDalae 161
                 +++++++++  +++  +  ++ + +  +   ++++ S+ g  +  +g a+Ya   + l +la+
  CTQ27763.1  96 SDAIDRLFRINIHAPYHasVEAARRMPEGGRIIVIGSVNGdRMPLPGMAAYALSKSALQGLAR 158
                 999999998777765441133333334444455555554446666666666666666666665 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.5e-05     0.033       3      91 ..       9     119 ..       7     126 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
                    EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.................T--TTSHHHHHHHHHHH--S..EEEE------HHHHHHSHH...HHHH CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeeglevlaltre.................eldltdaeavaellkeakpd..vvvnaAAytavDkaEseee...aaya 76 
                    +lv+G++  +G ++++++ ++g++v+   +                  ++d +d++av +l+++  p   +vvna+     D+ E++++   + ++
     CTQ27763.1   9 VLVLGGSRGIGAAIVRRFVADGASVVFSYSGspeaaerlaaetgstavQADSADRDAVISLVRDSGPLdvLVVNAGIALFGDALEQDSDaidRLFR 104
                    899*******************9988775556899******************************9966799***999999999999751115689 PP

                    HHTHHHHHHHHHHHH CS
  RmlD_sub_bind  77 vnaeavealAeaaaa 91 
                    +n +a+ + + +aa+
     CTQ27763.1 105 INIHAPYHASVEAAR 119
                    999999988777766 PP

>> Eno-Rase_NADH_b  NAD(P)H binding domain of trans-2-enoyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   9.1e-05       0.2      40      73 ..       6      35 ..       1      42 [. 0.71
   2 ?   -2.0   0.0       1.4   3.2e+03      40      51 ..     124     135 ..     111     135 .. 0.64
   3 ?   -2.7   0.0       2.3   5.2e+03      53      71 ..     155     173 ..     151     176 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.1e-05
                     -SEEEEESTSSHHHHHHHHHHHHSS--EEEEEE- CS
  Eno-Rase_NADH_b 40 pkkvLviGaStGYGLAsriaaafgagadtigVsf 73
                      k vLv+G+S G G A  i+  f   ad+ +V+f
       CTQ27763.1  6 NKSVLVLGGSRGIGAA--IVRRFV--ADGASVVF 35
                     599********99955..777777..44444444 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
                      -SEEEEESTSSH CS
  Eno-Rase_NADH_b  40 pkkvLviGaStG 51 
                        +++viG+ +G
       CTQ27763.1 124 GGRIIVIGSVNG 135
                      468999999765 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.3
                      HHHHHHHHHHSS--EEEEE CS
  Eno-Rase_NADH_b  53 GLAsriaaafgagadtigV 71 
                      GLA  +a  fg    t++V
       CTQ27763.1 155 GLARGLARDFGPRGITVNV 173
                      7777777777766667666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1924.87
//
Query:       CTQ27764.1  [L=197]
Description: putative transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-11   42.6   0.1    6.7e-11   41.8   0.1    1.5  1  TetR_N    Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.1   3.8e-15   6.7e-11       2      45 ..      22      65 ..      21      67 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 3.8e-15
                HHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHH CS
      TetR_N  2 ldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLle 45
                +++A +lf  rGyda++v+++ ++ G++++++Y  F+sK +L+ 
  CTQ27764.1 22 IETAQRLFHARGYDAVSVADLTQAFGINPPSFYAAFGSKLGLYT 65
                799************************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1626.55
//
Query:       CTQ27765.1  [L=251]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-49  168.3   0.6    2.3e-49  168.1   0.6    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    4.8e-45  153.4   0.0    5.8e-45  153.2   0.0    1.1  1  adh_short     short chain dehydrogenase
    9.6e-11   41.9   0.1    1.4e-10   41.4   0.1    1.1  1  KR            KR domain
  ------ inclusion threshold ------
      0.011   16.2   0.0      0.031   14.6   0.0    1.7  1  HEAT_2        HEAT repeats


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1   0.6   5.2e-53   2.3e-49       1     234 []       9     250 ..       9     250 .. 0.92

  Alignments for each domain:
  == domain 1  score: 168.1 bits;  conditional E-value: 5.2e-53
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHH......SSEEEEEE-----EGCSS-GG CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v.lecDVtdeeqvealveevvekf......gklDilvnnagiapklkgpfl 88 
                   Ga +g+Gr++A  +a++  +v++t+++  + +++v +  ++lg++ + l++D +++++  a+++ + + +       ++D l+nnag+ +   +p++
    CTQ27765.1   9 GANRGLGRQTALDIARQDGDVIVTYRGSLEqAEAVVADIRALGRKaIaLPLDMAQTASFPAFADSLGSALasvwgrATFDHLINNAGHGEF--APLA 103
                   899************************999877777777778877447**********999888766554333355569************..**** PP

                   GH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT. CS
  adh_short_C2  89 etsreefdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg. 184
                   et +++fd  ++v ++++f l++ +lpl+++gg+ivn ss   +++ p+ +ay+aaKaa+e l+ y+A+elg +gi+vN+++pg+i+T+   g+ + 
    CTQ27765.1 104 ETREAQFDGLFNVHVKGVFFLVQTLLPLLADGGRIVNFSSGLTRVSYPGFSAYAAAKAAVEMLSVYMARELGGRGITVNTIAPGAIATDFGGGLVRd 200
                   ******************************************************************************************8887552 PP

                   HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTGG CS
  adh_short_C2 185 fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGlt 234
                     e+ ++++a++ lgr+g pe+++ +++ L+ d+++++t q + v gG t
    CTQ27765.1 201 DAEVNAQFAAMTALGRVGVPEDIGPMIASLLRDDNRWVTAQRIEVSGGQT 250
                   778*********************************************75 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2   0.0   1.3e-48   5.8e-45       1     188 [.       3     195 ..       3     202 .. 0.95

  Alignments for each domain:
  == domain 1  score: 153.2 bits;  conditional E-value: 1.3e-48
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH......SSESEEEE---SS--SS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl......gkldvLvnNAGitgsgp 92 
                 k++l+tGa +G+Gr++a  +a+++ +v+v +  s e++e+v++ ++++g+ka+a+++D+++ ++  a+ +   + l       + d L+nNAG  +++p
  CTQ27765.1   3 KIALITGANRGLGRQTALDIARQDGDVIVtYRGSLEQAEAVVADIRALGRKAIALPLDMAQTASFPAFADSLGSALasvwgrATFDHLINNAGHGEFAP 101
                 79***************************899999*********************************9999988866676677899************ PP

                 GGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  93 fselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                  +e+ e++++ +++v ++gvf l++++lp +    +GrIvn sS  ++v+++g++aY+A+Kaav++l+  +a+el  +gi+vn++aPG+++Td+  
  CTQ27765.1 102 LAETREAQFDGLFNVHVKGVFFLVQTLLPLLA--DGGRIVNFSSGLTRVSYPGFSAYAAAKAAVEMLSVYMARELGGRGITVNTIAPGAIATDFGG 195
                 ******************************77..99********************************************************9865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.1   3.1e-14   1.4e-10       4     172 ..       6     180 ..       4     186 .. 0.84

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 3.1e-14
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS......S---EEEE--------- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee......ppikGvihaAgvlrdkl 96 
                 litG+  gLG+++a  +a++    ++++ R   + e+++a +a ++alg +  ++++D ++ ++  a  +++ +        ++    i+ Ag+ + ++
  CTQ27765.1   6 LITGANRGLGRQTALDIARQDGD-VIVTYRG--SLEQAEAVVADIRALGRKAIALPLDMAQTASFPAFADSLGSALasvwgrATFDHLINNAGHGEFAP 101
                 9*****************98665.5555666..6788999**********************99999888877766222333455679*********** PP

                 TTT--HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH.HHHTEEE CS
          KR  97 leemtaedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs.qglpavs 172
                 l+e+ +++++ +++  vkG+  L ++l +   +   +v fSS  + +  +g ++Yaaa a ++ l  y ++ +g ++++
  CTQ27765.1 102 LAETREAQFDGLFNVHVKGVFFLVQTLLPllADGGRIVNFSSGLTRVSYPGFSAYAAAKAAVEMLSVYMAReLGGRGIT 180
                 *************************99996677779***************************9988765414555555 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     7e-06     0.031      41      81 ..     200     240 ..     194     246 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7e-06
      HEAT_2  41 ededpavRraaaeaLgaigdpealpaLkellddddddvvRe 81 
                 +d++ + + aa +aLg++g pe++    ++l++dd++ v +
  CTQ27765.1 200 DDAEVNAQFAAMTALGRVGVPEDIGPMIASLLRDDNRWVTA 240
                 34556899999999999999999977777666666554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1937.73
//
Query:       CTQ27766.1  [L=44]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       160  (0.00892409); expected 358.6 (0.02)
Passed bias filter:                      143  (0.0079759); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 347.92
//
Query:       CTQ27767.1  [L=292]
Description: Transcriptional regulator, AraC family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-37  127.2   0.0    5.9e-37  126.6   0.0    1.3  1  AraC_N          AraC-type transcriptional regulator N-terminu
    1.8e-19   69.7   1.2    1.8e-19   69.7   1.2    1.8  2  HTH_18          Helix-turn-helix domain
    1.2e-11   44.4   0.0    2.9e-05   24.1   0.0    2.4  2  HTH_AraC        Bacterial regulatory helix-turn-helix protein
    0.00019   21.1   0.0    0.00068   19.4   0.0    2.0  1  TetR_N          Bacterial regulatory proteins, tetR family
     0.0015   18.4   0.1        2.1    8.4   0.0    2.6  2  HTH_15          Helix-turn-helix domain of alkylmercury lyase
     0.0043   17.4   0.8        2.7    8.4   0.0    3.5  3  HTH_31          Helix-turn-helix domain
     0.0066   16.1   0.9     0.0066   16.1   0.9    2.0  2  AraC_binding_2  AraC-binding-like domain
     0.0083   15.7   0.0        2.3    7.8   0.0    2.6  2  HTH_24          Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.014   15.2   0.1        1.2    9.0   0.0    2.7  2  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.071   12.9   0.2       0.43   10.5   0.0    2.3  2  HTH_23          Homeodomain-like domain


Domain annotation for each model (and alignments):
>> AraC_N  AraC-type transcriptional regulator N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   0.0   3.3e-40   5.9e-37       1     147 [.      26     173 ..      26     174 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.6 bits;  conditional E-value: 3.3e-40
      AraC_N   1 aipglslfrtsepaevalvvyepslcivlqGkKrvhlgdeafeydpgeylvvsvdlpveievveaspekPylglalaldpellaell.aeaekeessrg 98 
                 ++pg++l+r+ +p + + ++ +p++++ lqG+K v+ g  +f+y+pge +v+++d+p++++++eas+  Py++l+l+ld ++l+el  a ++ +++++ 
  CTQ27767.1  26 PVPGITLVRALHPGDLQAAIARPLVAMLLQGRKSVTTGLASFDYGPGEAMVIAADVPTTSQITEASQRFPYYALVLELDLAILRELQeAGPSGPDEAPR 124
                 58*************************************************************************************54444777999* PP

      AraC_N  99 lavskldeelldallRLlrlldspedipvLaplivrEilyrlLqgeqga 147
                 + ++++++++ da+ RL+rl+d+p + +vL++ ++rE++y+lLq+ +g+
  CTQ27767.1 125 VGIEPMNADVTDAAYRLARLFDQPGALAVLGEGLRRELHYWLLQSVHGP 173
                 *********************************************9986 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1         5     9e+03      31      42 ..     186     197 ..     184     203 .. 0.76
   2 !   69.7   1.2     1e-22   1.8e-19       1      81 []     208     287 ..     208     287 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5
                 HHHHHHHHHHHS CS
      HTH_18  31 lRlerArrlLle 42 
                  R++rA ++L++
  CTQ27767.1 186 ARIRRAVAMLRR 197
                 688999988865 PP

  == domain 2  score: 69.7 bits;  conditional E-value: 1e-22
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrrr 81 
                 la+a+g+s + ++r+f++ + l+p ++ ++lRl +Arrl+l  +g+s+a++A ++G+ + s+F+r + +l+g +P++ rrr
  CTQ27767.1 208 LADAAGMSVSVFHRHFRAMTTLSPLQFQKQLRLIHARRLMLA-EGMSIAQAAGEVGYISVSQFTREYARLYGAPPGRDRRR 287
                 89**************************************96.*********************************99987 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.6e-08   2.9e-05       1      41 [.     195     235 ..     195     236 .. 0.94
   2 !   18.0   0.0   1.2e-06    0.0022       6      34 ..     249     278 ..     247     279 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.6e-08
                 HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyr 41 
                 Lr +++++ +++ +Ad++g+S s F+r F++ t  +P q+ 
  CTQ27767.1 195 LRRDFMQPVSVDALADAAGMSVSVFHRHFRAMTTLSPLQFQ 235
                 688999*************************9999999986 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.2e-06
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSS CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketG 34 
                 +++++i++ A e+g+ S s+F+r + + +G
  CTQ27767.1 249 AEGMSIAQAAGEVGYiSVSQFTREYARLYG 278
                 6789*********************99998 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.8e-07   0.00068      14      41 ..     200     227 ..     188     229 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.8e-07
                 TTT--HHHHHHHHTSSHHHHHHHTSSHH CS
      TetR_N  14 ydattvreIAkrAGvskgalYryFpsKe 41 
                 ++ ++v+++A++AG+s + ++r+F+ + 
  CTQ27767.1 200 MQPVSVDALADAAGMSVSVFHRHFRAMT 227
                 5679********************9765 PP

>> HTH_15  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0025       4.5      16      42 ..      39      65 ..      31      74 .. 0.82
   2 !    8.4   0.0    0.0012       2.1      34      56 ..     201     223 ..     190     229 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0025
      HTH_15 16 ggssaellrpLlrlLakGepVtveeLA 42
                g  +a ++rpL  +L++G+    ++LA
  CTQ27767.1 39 GDLQAAIARPLVAMLLQGRKSVTTGLA 65
                456899************987777777 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0012
      HTH_15  34 epVtveeLAaatgrsveevrqaL 56 
                 +pV+v+ LA+a+g sv   ++  
  CTQ27767.1 201 QPVSVDALADAAGMSVSVFHRHF 223
                 6**************97666555 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.018        31      15      33 ..     203     221 ..     184     240 .. 0.80
   2 !    8.4   0.0    0.0015       2.7       7      33 ..     244     271 ..     239     272 .. 0.87
   3 ?   -0.1   0.0      0.66   1.2e+03      48      59 ..     271     282 ..     269     287 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.018
      HTH_31  15 LsqeevAerlgvsestlsr 33 
                 +s +++A+++g+s+s  +r
  CTQ27767.1 203 VSVDALADAAGMSVSVFHR 221
                 68999********998777 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0015
      HTH_31   7 ralReraGLsqeevAerlgv.sestlsr 33 
                 r+l  ++G+s +++A+ +g+ s+s+ +r
  CTQ27767.1 244 RRLMLAEGMSIAQAAGEVGYiSVSQFTR 271
                 88999**************559998877 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.66
      HTH_31  48 ealaralgldpa 59 
                 + +ar++g++p 
  CTQ27767.1 271 REYARLYGAPPG 282
                 5689*****864 PP

>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.9   3.7e-06    0.0066      57     151 ..      49     150 ..      17     170 .. 0.82
   2 ?   -0.3   0.3      0.41   7.4e+02       9      35 ..     200     227 ..     184     252 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.7e-06
  AraC_binding_2  57 lvqlplsGraeveqggrevvlgpgdavvldpgrpyrlrwsadce.....qlvlrip....ralLerplraplrfaprldldsgagalwrrllrsl 142
                     lv + l+Gr +v++g + ++ gpg+a+v++++ p++ +++++++      lvl ++    r+l e+ +++p++ +++  +  ++ a + ++   l
      CTQ27767.1  49 LVAMLLQGRKSVTTGLASFDYGPGEAMVIAADVPTTSQITEASQrfpyyALVLELDlailRELQEAGPSGPDEAPRV--GIEPMNADVTDAAYRL 141
                     899*************************************9777777779999999999888888888889888877..6677777777777777 PP

  AraC_binding_2 143 vaelaelgp 151
                     ++  +++g 
      CTQ27767.1 142 ARLFDQPGA 150
                     777766654 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.41
  AraC_binding_2   9 fvphrlrplgad.rfdarlrsarlgdls 35 
                     ++p+++++l+++ ++++++ ++++++++
      CTQ27767.1 200 MQPVSVDALADAaGMSVSVFHRHFRAMT 227
                     5578888888777888888888888743 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0      0.01        19       3      16 ..     102     115 ..     101     117 .. 0.87
   2 !    7.8   0.0    0.0013       2.3      19      41 ..     204     226 ..     202     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.01
      HTH_24   3 etdrkILelLqknp 16 
                 e+d++IL++Lq+ +
  CTQ27767.1 102 ELDLAILRELQEAG 115
                 68*********965 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0013
      HTH_24  19 sqreLAerlglSpstvnrrlkrL 41 
                 s   LA++ g+S+s  +r+ + +
  CTQ27767.1 204 SVDALADAAGMSVSVFHRHFRAM 226
                 6678***************9988 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00069       1.2       3      16 ..     102     115 ..     102     120 .. 0.90
   2 ?    3.3   0.0     0.042        75      10      32 ..     193     217 ..     188     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00069
  HTH_AsnC-type   3 eiDrkILeaLqeda 16 
                    e+D++IL++Lqe +
     CTQ27767.1 102 ELDLAILRELQEAG 115
                    79**********87 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.042
  HTH_AsnC-type  10 eaLqed..aRisyaeLAervGlSes 32 
                    + L++d     s+ +LA++ G+S s
     CTQ27767.1 193 AMLRRDfmQPVSVDALADAAGMSVS 217
                    6688888888999**********76 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.9   1.6e+03       7      32 ..     189     217 ..     183     225 .. 0.56
   2 ?   10.5   0.0   0.00024      0.43      12      40 ..     246     275 ..     232     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.9
      HTH_23   7 Rlrillllae...GlsvreIAreLgvsrr 32 
                 R  ++ l ++     sv + A++ g+s +
  CTQ27767.1 189 RRAVAMLRRDfmqPVSVDALADAAGMSVS 217
                 44444444333334566677777777765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00024
      HTH_23  12 lllaeGlsvreIAreLg.vsrrTvyrwlkr 40 
                 l+laeG+s++++A e g +s ++  r   r
  CTQ27767.1 246 LMLAEGMSIAQAAGEVGyISVSQFTREYAR 275
                 46668******************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2281.99
//
Query:       CTQ27768.1  [L=68]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-09   35.8   0.9    7.2e-09   35.5   0.9    1.1  1  DUF1471   Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.9     4e-13   7.2e-09       6      54 ..      22      66 ..      19      66 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 4e-13
                EEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEE CS
     DUF1471  6 tisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAel 54
                ti+++    +++ +e ++ ++A+++GA  YrIt+ar   g+++h+tA +
  CTQ27768.1 22 TITAT--GDTLDHAESKIRQQAAREGATTYRITEARM--GNKVHITAKI 66
                67777..99****************************..********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 521.53
//
Query:       CTQ27769.1  [L=309]
Description: NmrA family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-16   60.4   0.0    2.1e-16   60.2   0.0    1.1  1  NmrA             NmrA-like family
  ------ inclusion threshold ------
      0.061   13.6   1.1       0.15   12.4   0.4    1.9  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.17   11.1   0.0       0.25   10.5   0.0    1.1  1  DUF3404          Domain of unknown function (DUF3404)


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   3.5e-20   2.1e-16       2     228 ..      13     246 ..      12     274 .. 0.86

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 3.5e-20
                 EESSTTSHHHHHHHHHHHH....HT-EEEEEES-S........-SHHHHHHHHSTTEEEES-TT..-HHHHHHHHTT-SEEEE---GGS-HHHHHHHHH CS
        NmrA   2 lviGaTGrqGksvvrallk....aghkvralvRdt........kselakslkeaGvelvkgdld..dkeslvealkgvdvvfsvtgfyskeiedgkklv 86 
                 lv+Ga G++G++v +al+     ++ +v ++v           +s + ++l++aG+++++ d+     e l+  ++g  +v+  +gf  +    + k+ 
  CTQ27769.1  13 LVLGA-GQLGAAVLDALVPavieRQGTVSVIVSPAawdeagqlRSSNHQALADAGATFLAVDIAgsAMETLADQFRGFTTVINCMGFV-AGPGTQLKIT 109
                 67765.*****9988877655558889999998889999********************999872245789999********999955.6667899*** PP

                 HHHHHHS-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHC.TS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHH CS
        NmrA  87 dAakeaGvkhfiySslgddndrsnaeepavphfdsKaeieeyvral.gipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaee 184
                 +A+ +aGv+++++ ++g + d + ++  + p++d+ + ++  +ra       +v +g+f++++  +         + ++ ++  lg  +++  +  + +
  CTQ27769.1 110 RAVLAAGVPRYFPWQFGVNYDVV-GKGSGQPVWDEQYDVRTLLRAQrATEWVIVSTGMFTSFLFEPDFD----VVNLSNRTLHALGSWDTQVTVT-SPA 202
                 ********************999.6666*****************9567789999*****999885544....4555555799999999766666.*** PP

                 HHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS- CS
        NmrA 185 DiGafvikilkdprklkgkriklagntlsgneivelfekkigkt 228
                 DiG+ + +i  ++  + ++++ +ag+t s+ ++++  e+++ +t
  CTQ27769.1 203 DIGRLTTAIYLHQPRIVNEVVFVAGETTSYRQLADTVERVTQQT 246
                 ************9999999********************99876 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   2.4e-05      0.15       1      94 [.      12     117 ..      12     120 .. 0.67
   2 ?   -2.5   0.0      0.99   5.9e+03      18      42 ..     213     237 ..     191     261 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.4e-05
                      EEEE--SHHHHHHHHHHHCTCCT-G...EEEEEESSHHHHHHHHCHH......TTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGG....G CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvda...eitvadrskeklealaaka......lgvrfeaialdaenyeavLaallkegdlvvnlsppi....s 81 
                      vl++GaG  G av++ l+     ++    ++v     +++ +l ++       +g +f a+ +  +  e  La   ++ + v+n+++ +     
       CTQ27769.1  12 VLVLGAGQLGAAVLDALVPAVIERQgtvSVIVSPAAWDEAGQLRSSNhqaladAGATFLAVDIAGSAMET-LADQFRGFTTVINCMGFVagpgT 104
                      89***********987765443333432444433333443344433367884455555555555555555.99999***********9988888 PP

                      HHHHHHHHHHHT- CS
  Sacchrp_dh_NADP  82 sldvlkaCietgv 94 
                       l++ +a +++gv
       CTQ27769.1 105 QLKITRAVLAAGV 117
                      8999999999987 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.99
                      HCTCCT-GEEEEEESSHHHHHHHHC CS
  Sacchrp_dh_NADP  18 arhfdvdaeitvadrskeklealaa 42 
                      + +  + +e++ +  + ++ ++la+
       CTQ27769.1 213 LHQPRIVNEVVFVAGETTSYRQLAD 237
                      4433333333322222222233333 PP

>> DUF3404  Domain of unknown function (DUF3404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.2e-05      0.25     138     194 ..     241     297 ..     224     307 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.2e-05
                 TTS----TTS...HHHHHHT--HHHHHHHHTT-SEEESSSEEEEEETTEEEEEEHHH CS
     DUF3404 138 kerkltlaneehPLlallqeldeegieALlsGyrayaeedeLWlrkedgykvlseev 194
                 + +++t ++  h L all++l ++  +A+l    a+a++d +W   +d++++ ++  
  CTQ27769.1 241 RVTQQTFSKAVHTLPALLEQLRTDPDDAMLRYRAAFARGDGVWWPMGDTWNARHQLP 297
                 45678889999***************************************9877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2406.76
//
Query:       CTQ27770.1  [L=301]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-45  152.7   1.9    1.4e-44  152.0   1.9    1.3  1  LysR_substrate  LysR substrate binding domain
    1.7e-16   59.9   0.7    4.1e-16   58.7   0.7    1.7  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.028   14.3   0.1       0.11   12.4   0.0    2.0  2  MarR_2          MarR family
      0.029   14.2   0.0       0.15   11.9   0.0    2.3  1  HTH_IclR        IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   1.9     3e-48   1.4e-44       2     208 ..      88     294 ..      87     295 .. 0.93

  Alignments for each domain:
  == domain 1  score: 152.0 bits;  conditional E-value: 3e-48
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGG.SS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLar.ge 94 
                     ++++gr+++g+p++lar+++ p++ +f+++yP++el l ++d  +++d ++eg +D++ir+g++ +++ l+arpLa+++++++asp+  La+ g+
      CTQ27770.1  88 AQPAGRFKVGMPQSLARHCILPRIGEFLQQYPDLELILCSSD--NVEDIIQEG-FDCVIRTGRIeDSTTLVARPLARYRWMVLASPAW-LAAhGR 178
                     789***************************************..*********.**********9999*******************9.9999** PP

                     SECGGGGCTSEEEEESTTST...HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEE CS
  LysR_substrate  95 pvsledLadeplilleegsg...lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylv 186
                     p s++dL++++ + + ++ +   + +l+    ++  ++ r +l v++++a +++  +GlG+  + +++++++l++g lv + l++ +   +l+lv
      CTQ27770.1 179 PQSIDDLHHHRAVGYLNHRTgrtIDWLFSLDDGDCAIRMRETLVVDDTDAYIQAGIQGLGLIRVASYLAEPYLQSGALV-ACLEQAASDLPLSLV 272
                     ***************755555666666666666669999****************************************.899994666****** PP

                     EETTCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 187 yrkgrelspavrafidflreal 208
                     y+++r+l+pavraf d+ r++l
      CTQ27770.1 273 YPQNRYLPPAVRAFYDWSRRVL 294
                     ******************9976 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.7   9.1e-20   4.1e-16       1      60 []       4      63 ..       4      63 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 9.1e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l+++++ vav+++ sf+rAAe Lg   ++vsr +k+LE++lg++L++Rt+r+l++T +G+
  CTQ27770.1  4 LDAMQVYVAVVDAHSFARAAEVLGQPRSTVSRVVKELEAWLGAQLLQRTTRKLSVTTEGR 63
                57899*****************************************************97 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.4e-05      0.11      23      47 ..      18      42 ..      12      43 .. 0.89
   2 ?   -2.5   0.0       1.1     5e+03       6      20 ..     186     200 ..     184     212 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.4e-05
                EHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsrilkrLva 47
                + +  a+ lg ++s+vsr++k+L+a
  CTQ27770.1 18 SFARAAEVLGQPRSTVSRVVKELEA 42
                567789*****************98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHHCTTTS CS
      MarR_2   6 aqarvLaaLgrrpgr 20 
                  ++r+ ++L +r gr
  CTQ27770.1 186 HHHRAVGYLNHRTGR 200
                 678889999999885 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.4e-05      0.15      20      44 ..      18      42 ..      14      43 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.4e-05
                BHHHHHHHHTS-HHHHHHHHHHHHH CS
    HTH_IclR 20 tlselArrtglpkStvhRlLqtLve 44
                +++  A+ +g p+Stv+R ++ L+ 
  CTQ27770.1 18 SFARAAEVLGQPRSTVSRVVKELEA 42
                77889***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2422.97
//
Query:       CTQ27771.1  [L=307]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-25   87.7   5.1    9.8e-25   87.1   5.1    1.3  1  LysR_substrate  LysR substrate binding domain
    1.1e-16   60.5   0.0    1.8e-16   59.8   0.0    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.032   14.0   0.0      0.065   13.0   0.0    1.5  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   5.1   1.6e-28   9.8e-25       4     208 ..     101     304 ..      98     305 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 1.6e-28
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsl 98 
                      ++ +rig ++   + l+ppll+ ++++ P+v+l+  ++d+ ++ +ll+e ++D+a+  + +++ +++++p+++  +  + sp+  +  + p+s 
      CTQ27771.1 101 AQQLFRIGLSDWSEHWLMPPLLPGLMQEAPGVSLQSIAADPFQVRQLLEEERIDVAVSVNKQSRGEVVSEPVMTMGVTTLWSPQQ-IPCRGPLSV 194
                     56789*******************************************************************************8.********* PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTCC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgre 192
                     +d+  ++++++    + + ++++ l+++gl++rv++ + ++++   l      +a +p+ +++++ a+  l+ ++ p+ ++p ++l+++++k+r 
      CTQ27771.1 195 SDFVAWEHVMVAYRETGHGEIDRQLASQGLARRVRFATQNFSTFPLLLTTLPLFATVPQGLAQRWQAQYALR-ADAPPVAYPeFTLCILRHKRRA 288
                     ************************************************************************.9999999999************ PP

                     CHHHHHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidflreal 208
                     ++pa+ +++ +l++a+
      CTQ27771.1 289 QDPALNWLVTMLKQAM 304
                     ************9986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0     3e-20   1.8e-16       1      60 []      14      73 ..      14      73 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 3e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l++l ++  + +egs+tr Ae L+l qpa+s ++krL+e +++pLf+R+ rg+ +T++++
  CTQ27771.1 14 LNLLTVLMVLYREGSVTRTAEVLHLGQPAISGALKRLREMFDDPLFVRSARGMLPTPRAQ 73
                68999****************************************************986 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.1e-05     0.065       4      44 ..      18      58 ..      16      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
                HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30  4 TLraylenggnisatAkaLhvHrnTlryRLrrieellgldl 44
                T+ + l   g++++tA+ Lh+    ++  L+r++e+++ +l
  CTQ27771.1 18 TVLMVLYREGSVTRTAEVLHLGQPAISGALKRLREMFDDPL 58
                667777888**************************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2362.58
//
Query:       CTQ27772.1  [L=288]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-23   82.7   0.2    4.8e-23   82.2   0.2    1.1  1  Lactamase_B    Metallo-beta-lactamase superfamily
    1.2e-06   28.2   0.1    2.3e-06   27.3   0.0    1.4  1  Lactamase_B_2  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.058   13.3   0.1      0.095   12.6   0.1    1.7  1  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.2     8e-27   4.8e-23       5     181 ..      46     238 ..      43     241 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 8e-27
                  SSEEEEEEETTCEEEES--SCHHHHHHHH............HHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHH CS
  Lactamase_B   5 pvnsyliegdggviLiDtGtsteaaraal............elaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeadda 90 
                  ++ s++++++ ++i+iDt t++ ++r               +l+a+g++p+dv+ v+lTHlH+DH+G++  + + ++vp + +a ++++ ++  + + 
   CTQ27772.1  46 SIHSWVVQTPYDLIVIDTATGNGRERGGNplyhqlntpyleNLRAAGVNPEDVTLVLLTHLHTDHVGWNTVWQDDRWVPLFPNARYLCSAKELSRVKN 143
                  5789************************9******************************************************************999 PP

                  HHHCCHH.....TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHH CS
  Lactamase_B  91 asrkgll.....lagvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaevrdpsdaekylds 181
                  ++r  +l     l+   a   ++++  +   +ggr ++ +t+g+ + h  +v+ +g++  +f+GD+l+++ +   +  +  a+++dp +ae ++++
   CTQ27772.1 144 SERYRALwldslLPVIEAGQLETVDVATRPRVGGRIDFIPTPGHSPDHAALVLAAGDDYACFSGDLLHSPIQFAHPQ-WNSAFCGDPRQAEVSRRE 238
                  9999999*****9999999*************************************************777777666.999999999999999865 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   3.8e-10   2.3e-06       3     145 ..      59     211 ..      58     220 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 3.8e-10
                    EEES--TT.........HHHH.HTCGGS--S.SS--..SEEEEE-SS--HHHHGGGGCCCC.......C--EEEEEEEEHHHHHHCCTTCGHHHCH CS
  Lactamase_B_2   3 iLiDagpd.........lrqq.alralqPve.lrdelppidaVllthaHyDHlaglltlre.......lrpkklplyapkgvlavleanfvylale 80 
                    i+iD+ ++         l  q  +++l++ + +  +++++ +Vllth H DH+ g  t+ +       + p +++ +++++ l+ ++++  y al 
     CTQ27772.1  59 IVIDTATGngrerggnpLYHQlNTPYLENLRaAGVNPEDVTLVLLTHLHTDHV-GWNTVWQddrwvplF-P-NARYLCSAKELSRVKNSERYRALW 151
                    778888888888888887777789999999999999*****************.*****9965333311.1.144458888888888887777777 PP

                    TT......TTEEEEEE-TTSEEEECSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEECTTEEEEEESS-S- CS
  Lactamase_B_2  81 ee......pavnvheldwgesfelgdggleitatparhksgrrldrnagdtlGlriegggkrvyyigDtgy 145
                     +       a +++++d  ++ ++g  g +i ++p ++ s+          ++l+++ g+  ++++gD+ +
     CTQ27772.1 152 LDsllpviEAGQLETVDVATRPRVG--G-RIDFIPTPGHSPD--------HAALVLAAGDDYACFSGDLLH 211
                    7766744433344444444444444..4.8***********9........99*****99********9865 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.6e-05     0.095      34      67 ..      81     127 ..      44     271 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
  Lactamase_B_3  34 a..............eeaDlvlisqaledHahletlkqlaenvkvlee 67 
                    +              e++ lvl+++ ++dH   +t+ q +++   l +
     CTQ27772.1  81 NtpylenlraagvnpEDVTLVLLTHLHTDHVGWNTVWQ-DDRWVPLFP 127
                    044444555555555******************99998.333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2139.14
//
Query:       CTQ27773.1  [L=303]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.8e-50  169.3   0.0    1.2e-49  169.0   0.0    1.1  1  NmrA            NmrA-like family
    1.7e-20   73.7   0.2    2.1e-20   73.4   0.2    1.2  1  NAD_binding_10  NAD(P)H-binding
    2.9e-07   30.2   0.1    4.3e-07   29.6   0.1    1.2  1  Epimerase       NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.095   11.7   0.0       0.13   11.3   0.0    1.1  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
       0.12   11.8   0.0       0.15   11.4   0.0    1.1  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.0   0.0   3.3e-53   1.2e-49       1     232 [.       7     233 ..       7     234 .. 0.93

  Alignments for each domain:
  == domain 1  score: 169.0 bits;  conditional E-value: 3.3e-53
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG.......S-HHHHHHHHHHHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy.......skeiedgkklvdAakea 92 
                 +lv+GaTG+qG+sv+rall++g++vralvRd+ s  a++l+++G+elv g  +d++ +++a+ gvd+vfsv ++        ++e+++g +++d a+e 
  CTQ27773.1   7 VLVFGATGQQGGSVARALLHRGWRVRALVRDPFSAGAAALAARGAELVVGTFEDRAAMRSAMAGVDGVFSVQPSSpggtvtdEQEVRYGITIADLAVEC 105
                 79***********************************************************************99************************ PP

                 S-SEEEEEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHH CS
        NmrA  93 GvkhfiySslgddndrsnaeepavphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvi 191
                 Gvkh++ySs  +  +       +v h+d+Kaeie+++r l + +t+v++  fme +  +        +++++ ++++l +g   + +l a+eDiG+ v+
  CTQ27773.1 106 GVKHLVYSSGSATGETP----TGVAHYDTKAEIERHIRRLPLAATIVRPATFMELLVMPGFG-----LDEGRFQFFMLPEGR--MQVL-AVEDIGHLVA 192
                 *********88877443....5899*****************************99885555.....666665677776666..7777.99******** PP

                 HHHHHHHHHTTEEEEE-SEEE-HHHHHHHHHHHHTS-EEEE CS
        NmrA 192 kilkdprklkgkriklagntlsgneivelfekkigktvkYt 232
                 +++  p+ + gk  ++a++ ++g ++  lf+ ++g+++ Y 
  CTQ27773.1 193 AVFAAPARFAGKTFEIASDSVTGRQLELLFSAAAGRPIPYS 233
                 **************************************996 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.2   5.9e-24   2.1e-20       1     148 [.      11     155 ..      11     198 .. 0.85

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 5.9e-24
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHC..HHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES-....--TCC..HHHH...HHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpekl..aeleaeeglevvegdvtdvedlaealkgadaVvsal....ggggk..deeg...aknivda 84 
                     GAtG+ G  +++ ll+r g++v+alvR+p ++  a+l a+ g+e+v+g ++d +++++a++g+d V+s      g  g+  de+     ++i+d 
      CTQ27773.1  11 GATGQQGGSVARALLHR-GWRVRALVRDPFSAgaAAL-AARGAELVVGTFEDRAAMRSAMAGVDGVFSVQpsspG--GTvtDEQEvryGITIADL 101
                     9****************.5*********977721445.579*****************************87443..3354444467799***** PP

                     HHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE- CS
  NAD_binding_10  85 akeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggLtd 148
                     a e gvk++v+ s+  +g+ +p+  g        a ++ k++ e+++r+  l  Tivrp+ +++
      CTQ27773.1 102 AVECGVKHLVYSSGSATGE-TPT--GV-------AHYDTKAEIERHIRRLPLAATIVRPATFME 155
                     ***********99999984.333..32.......45899********************99865 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.1   1.2e-10   4.3e-07       1     117 [.       7     117 ..       7     136 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.2e-10
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtln 97 
                 +lV GatG+ G  +++all +g++v +l r++ +   a+l+    elv + + dr+a++ +++  ++d v+ +   ++++ +++d     e+ +++  +
  CTQ27773.1   7 VLVFGATGQQGGSVARALLHRGWRVRALVRDPFSAGAAALAARgaELVVGTFEDRAAMRSAMA--GVDGVFSV-QPSSPGGTVTD-----EQEVRYGIT 97 
                 79*****************************99999888888899******************..9******9.66777777777.....566999*** PP

                 HHHHHHHHTCTEEEEEEEGG CS
   Epimerase  98 lleaarkagvkrllflsSse 117
                 +++ a ++gvk l++ s s+
  CTQ27773.1  98 IADLAVECGVKHLVYSSGSA 117
                 **********8888877654 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.5e-05      0.13       1     116 [.       8     115 ..       8     132 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.5e-05
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrnv 99 
                 +v G++G  G ++ ++L++++  + vr+l  r+  +    +   + ++++ g   d + ++ a+ gvd v+ +   ++   ++ e+   +v +    ++
  CTQ27773.1   8 LVFGATGQQGGSVARALLHRG--WRVRALV-RDPFSAGAAALAARGAELVVGTFEDRAAMRSAMAGVDGVFSVQPSSPGGTVTDEQ---EVRY--GITI 98 
                 689999************999..8999884.444444455555556669************************7777665555444...5544..4569 PP

   3Beta_HSD 100 leacvkagvrvlvYtSs 116
                  + +v++gv+ lvY S 
  CTQ27773.1  99 ADLAVECGVKHLVYSSG 115
                 9*************885 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.2e-05      0.15       1      39 [.       8      46 ..       8      74 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.2e-05
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHH CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgri 39
                   L+ G +G+ G  +a+ Ll++g +v  +vr+  s  ++ +
     CTQ27773.1  8 LVFGATGQQGGSVARALLHRGWRVRALVRDPFSAGAAAL 46
                   89*************************998766555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2295.19
//
Query:       CTQ27774.1  [L=182]
Description: Transcriptional regulator, TetR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-15   56.5   0.0    4.5e-15   55.2   0.0    1.8  1  TetR_N     Bacterial regulatory proteins, tetR family
    2.8e-05   24.4   4.6    2.8e-05   24.4   4.6    2.2  2  TetR_C_11  Tetracyclin repressor-like, C-terminal domain
      0.003   17.2   0.0     0.0047   16.5   0.0    1.3  1  CENP-B_N   CENP-B N-terminal DNA-binding domain
  ------ inclusion threshold ------
      0.061   13.1   3.0       0.39   10.6   0.0    3.5  4  HTH_IclR   IclR helix-turn-helix domain
      0.064   13.1   0.0       0.14   12.0   0.0    1.6  1  LacI       Bacterial regulatory proteins, lacI family


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   1.3e-18   4.5e-15       1      47 []      12      57 ..      12      57 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 1.3e-18
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                ++++Ar +f e+G + +++r+IA+rAGv+ g+lYr+Fp+++ Lleal
  CTQ27774.1 12 LIEVARDVFVEQGAE-ASLRDIARRAGVGMGTLYRHFPNRDSLLEAL 57
                699************.78***************************96 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.5      0.34   1.2e+03      11      15 ..      54      58 ..      12      76 .. 0.53
   2 !   24.4   4.6   7.8e-09   2.8e-05       8     112 ..      79     177 ..      75     178 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.34
   TetR_C_11 11 Lrall 15
                L+all
  CTQ27774.1 54 LEALL 58
                22223 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 7.8e-09
   TetR_C_11   8 rgDLrallralaealaspragallrallaeaqrdpelaealrerlleprraalravlrrAvarGelradadvelvldlllgpllyrllltgeplddafa 106
                 ++ L+++l + +++ ++   + +++ l++++ +dpe   al+ +++   raa   +l+rA++ G  r+d+  e ++dl++++ ++r   +++p  +  +
  CTQ27774.1  79 AAALLEWLAESVAFTHQ--HRGIIAPLMSAI-DDPE--SALHSACV-ALRAAGTSLLTRAQQAGLARPDLSGEELFDLIAALAWLREQPSHAPRAERIL 171
                 567999***99997777..79*******999.8896..57888555.5889999********************************9888888877777 PP

   TetR_C_11 107 erlvda 112
                 + l+da
  CTQ27774.1 172 AVLADA 177
                 777776 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-06    0.0047      19      51 ..      21      55 ..      14      57 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
                HHCTT..-HHHHHHHHT--CCHHHHHHHCHHHHCC CS
    CENP-B_N 19 leege..SkaelarrfnvpestlsdilknKkkllk 51
                +e+g   S +++arr +v++ tl++   n ++ll+
  CTQ27774.1 21 VEQGAeaSLRDIARRAGVGMGTLYRHFPNRDSLLE 55
                6888889**************************98 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00011      0.39      11      37 ..      19      45 ..      18      47 .. 0.88
   2 ?    0.5   0.1      0.15   5.2e+02       5      15 ..      79      89 ..      75     126 .. 0.80
   3 ?   -1.7   0.0      0.73   2.6e+03      25      33 ..     132     140 ..     128     143 .. 0.85
   4 ?   -2.2   0.1         1   3.6e+03       5      13 ..     167     175 ..     165     177 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
                T-CTTBSS-BHHHHHHHHTS-HHHHHH CS
    HTH_IclR 11 alaeapqeltlselArrtglpkStvhR 37
                 + e++ e +l+++Arr+g+   t +R
  CTQ27774.1 19 VFVEQGAEASLRDIARRAGVGMGTLYR 45
                677889999*************99999 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.15
                HHHHHCT-CTT CS
    HTH_IclR  5 alaiLdalaea 15
                a+a+L+ lae 
  CTQ27774.1 79 AAALLEWLAES 89
                78888888874 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.73
                 HHHHTS-HH CS
    HTH_IclR  25 ArrtglpkS 33 
                 A+++gl+++
  CTQ27774.1 132 AQQAGLARP 140
                 789999987 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1
                 HHHHHCT-C CS
    HTH_IclR   5 alaiLdala 13 
                 a +iL  la
  CTQ27774.1 167 AERILAVLA 175
                 556666666 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.8e-05      0.14       2      16 ..      29      43 ..      28      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.8e-05
                HHHHHHHCTS-HHHH CS
        LacI  2 ikDVArlAGVSkaTV 16
                ++D+Ar+AGV + T 
  CTQ27774.1 29 LRDIARRAGVGMGTL 43
                89********99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1301.63
//
Query:       CTQ27775.1  [L=344]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-25   88.8   0.1      1e-24   88.1   0.1    1.4  1  ADH_zinc_N_2   Zinc-binding dehydrogenase
    8.5e-15   54.9   0.3      2e-14   53.7   0.3    1.7  1  ADH_zinc_N     Zinc-binding dehydrogenase
    4.1e-09   36.3   0.0    1.1e-08   34.9   0.0    1.7  1  ADH_N          Alcohol dehydrogenase GroES-like domain
     0.0084   16.0   0.1      0.023   14.6   0.1    1.8  1  ADH_N_2        N-terminal domain of oxidoreductase
  ------ inclusion threshold ------
      0.044   13.5   0.0      0.088   12.5   0.0    1.4  1  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro
      0.054   12.8   0.2      0.098   11.9   0.2    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
        0.1   12.1   1.4       0.11   11.9   0.4    1.6  2  adh_short      short chain dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.1     4e-28     1e-24       1     133 []     215     336 ..     215     336 .. 0.89

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 4e-28
                   TT-SEEEETTSTTHHHHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyrtedfeaatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaali 97 
                   lGAd vidy+t+++e+ + +   D+v+d+ gg+a   + l+ l++gG l  i          + a+++++r+v++++   +++s +a+ l++la+l+
    CTQ27775.1 215 LGADSVIDYTTTAVEETV-R-DLDLVIDAPGGPAS-GRFLRTLRPGGALYPIFP-----LGFAGAEEARQRGVTVSTTQ-VRSS-GAQ-LARLADLL 300
                   8*************9665.5.5***********99.*******88799987763.....24455555667899999998.9999.***.******** PP

                   HHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  98 eeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   ++G +++ +d+vfpl++++ Ah++ ++g+  GKiVl
    CTQ27775.1 301 DAGVIQVAIDSVFPLAQVQMAHERAAQGHLEGKIVL 336
                   ***********************************8 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.3   7.8e-18     2e-14       1      85 [.     184     260 ..     184     328 .. 0.89

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 7.8e-18
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrl 85 
                 gvG++avqlAk  Gaeviav+  ++  +++++lGad vi+y+      +++e    +++d+v++++G g +  + l+ l+pgG l
  CTQ27775.1 184 GVGHFAVQLAKWQGAEVIAVAAGRHE-AFLRQLGADSVIDYT----TTAVEETV--RDLDLVIDAPG-GPASGRFLRTLRPGGAL 260
                 9******************9999985.9*************3....45665555..5899*******.***************87 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   4.3e-12   1.1e-08       2      68 ..      33     105 ..      32     127 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 4.3e-12
                 TEEEEEEEEEEE-HHHHHHHTTS......TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-S CS
       ADH_N   2 gevlikvkaagiCgsDlhilkgg......kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscg 68 
                 gevl++v+a+g++  D  + +g       +++ev++plilG +++G+v++  ++v++++vGd+V + + ++ g
  CTQ27775.1  33 GEVLVQVHAVGVNPPDSYLRDGYqqlppeWRPEVRFPLILGTDLSGVVVARADDVREVAVGDEVYAMARFPEG 105
                 79***************999998999**99**********************************998877765 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   9.1e-06     0.023      15      93 ..      17     101 ..       5     112 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.1e-06
     ADH_N_2  15 esdfeleeeelpelkdGevlvralylSvDP...ymRgrmndaksyve.....pvelgdvmrggavgeVveSknpdfkvGdlVvgllg 93 
                 ++ +++e++++p l++Gevlv+++ ++v P   y R   ++           p+ lg  + g +v++  +    +++vGd V +++ 
  CTQ27775.1  17 PEVLSYEDAPMPVLQAGEVLVQVHAVGVNPpdsYLRDGYQQLPPEWRpevrfPLILGTDLSGVVVAR--ADDVREVAVGDEVYAMAR 101
                 56678999********************664448885555433222211223666666666666665..334445678888887765 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.4e-05     0.088      30      62 ..     171     204 ..     165     208 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.4e-05
                    STTEEEEEE--.SHHHHHHHHHHHHCT-EEEEEE CS
  ELFV_dehydrog  30 legkrvaisGs.Gnvgsyaallltelgakvvavs 62 
                    l+gkrv + G  G vg++a++l++ +ga+v+av 
     CTQ27775.1 171 LAGKRVLVNGAaGGVGHFAVQLAKWQGAEVIAVA 204
                    789*****************************97 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   3.8e-05     0.098      30      98 ..     175     241 ..     168     247 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.8e-05
                  EEEEES.TSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE- CS
  AlaDh_PNT_C  30 kvlviG.gGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigt 98 
                  +vlv G +G +G  A++ ak  ga+V ++    +    l++lga   +v+  +  +++e+v++ d+vi +
   CTQ27775.1 175 RVLVNGaAGGVGHFAVQLAKWQGAEVIAVAAG-RHEAFLRQLGAD--SVIDYTTTAVEETVRDLDLVIDA 241
                  7999994599****************997654.344567779**9..99******************965 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   4.5e-05      0.11       1      47 [.     174     218 ..     174     241 .. 0.77
   2 ?   -2.6   0.0       1.2     3e+03      17      31 ..     271     285 ..     266     330 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.5e-05
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee 47 
                 k vlv Ga++G+G+  ++    +Ga+v++v+      e+ + +l+++
  CTQ27775.1 174 KRVLVNGAAGGVGHFAVQLAKWQGAEVIAVAAGRH--EAFLRQLGAD 218
                 679**************************877655..4478888775 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
                 HHHHHHTT-EEEEEE CS
   adh_short  17 akelakeGakvvvvd 31 
                 a+e  ++G++v  ++
  CTQ27775.1 271 AEEARQRGVTVSTTQ 285
                 444444444444422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2666.47
//
Query:       CTQ27776.1  [L=391]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-61  207.1   0.0    5.4e-61  206.8   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.8   0.0     3e-65   5.4e-61       3     363 .]      35     385 ..      34     385 .. 0.95

  Alignments for each domain:
  == domain 1  score: 206.8 bits;  conditional E-value: 3e-65
                    EEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEE CS
  Aminotran_1_2   3 vinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilv 98 
                    +i+L+s+ +++     t+pev+   +  a   ++++ y+ + g p+++ea+a+f++r++ ++l++ +++ v +G++ +i  ++++l l pg+  ++
     CTQ27776.1  35 LIDLSSGSPDQP----TPPEVIDSLQS-AIHRRENHGYPSFWGKPQVREAIARFYRRQYDVELDPHSEIAVFQGSHIGIGGIPRAL-LSPGQYLIS 124
                    69*********9....**********9.**********************************************************.********* PP

                    EESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCB CS
  Aminotran_1_2  99 pdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfv 194
                     dp y+ y  ++  s+++++  pl+ e+ f  d+++l + +++      k  +++++ phNPtG++at++     l++a+++ + ++ D+aYa+  
     CTQ27776.1 125 TDPCYPIYRSAALQSQAAFYGLPLRAENHFLPDFNDLPREVAD------KAGLVVLNYPHNPTGALATPALFASALQFARRHQVPILHDFAYAAIG 214
                    *******************************************......99********************************************* PP

                    SSSSHTHHH.HGGSTTSTT..EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 195 fgsldavat.ranveeepn..llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrr 285
                    + ++da     ++ ++  +   + ++++sK f++aG+R G+++gna ++++ +kl+++ +s    + q a+ aal+ + +   ++ +  + +++rr
     CTQ27776.1 215 SAASDAPLSlFSQPDA--KawGVETYTFSKTFNMAGWRFGFAVGNASIIRAFKKLHTHSYStvFGAIQDAAIAALNLPAE---RIAQLTAVYHQRR 305
                    **99875533444444..345****************************************999***************8...79*********** PP

                    HHHHHHHHHSTEEEECCSCSSEEEEEETHH.CHHHHHHHHHHTCTEEEEEGGGGTS..TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 286 kelrdeLaelglkvlasqsgmflltdlsae.takelskkLleevgvyvtpgtsftv..pgrlRitvAglteeeleelveal 363
                    + +  +La+l ++  + q+++fl+ ++++  + +e+++ Ll+e +++v pgt f+   +g++Ri++ +  +e l +++++l
     CTQ27776.1 306 EWVLRRLAALRWPARDAQGTFFLWLGVPPGyRSQEFARLLLQEAHILVAPGTGFGEggEGFIRISL-TAGDEALSNALDRL 385
                    ****************************9999**********************************.77788888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.19s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 3266.91
//
Query:       CTQ27777.1  [L=268]
Description: YaeC family lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-51  173.5   0.0    4.1e-51  173.4   0.0    1.0  1  Lipoprotein_9  NLPA lipoprotein
  ------ inclusion threshold ------
      0.024   14.3   0.1        9.8    6.0   0.0    2.5  2  KNOX1          KNOX1 domain


Domain annotation for each model (and alignments):
>> Lipoprotein_9  NLPA lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.4   0.0   4.6e-55   4.1e-51       1     233 [.      28     263 ..      28     266 .. 0.95

  Alignments for each domain:
  == domain 1  score: 173.4 bits;  conditional E-value: 4.6e-55
                    EEEEEETTTHHHHHH.HHHHHHHTTTEEEEEEEESSSSHHHHHHHTTSSSEEEEEEHHHHHHHHHHTT-.EEEEEEEEE---EEE-SS-SSGGG-- CS
  Lipoprotein_9   1 lkvGvlsgpeaevle.kvkkllkkkgldleiveFtdyvqpNkaladgeiDanaFQhlpyLeqfnkekgkklvavgnthvepiglYSkkykslselk 95 
                    ++vG  +gp +e+ e  v + l  kg+++e++ F+d  q N+a+a+g+i+an+ Qh  yL++ n+  g + v ++++ ++p+glY  k+++l    
     CTQ27777.1  28 IRVGFNPGPYKEQFEkGVVPYLLSKGYKIEYKDFSDGIQVNDAVARGDIEANIMQHPVYLKAINERLGIDNVGIVQVPTPPMGLYGGKLTTLGTPA 123
                    78*************9899***************************************************************************** PP

                    TT-EEEEESSHHHHHHHHHHHHHTTSSEE-TT.-CTT--GGGEEE-TT--EEEEE-GGGHHHHGGTSSEEEE-HHHHHHTT--HHHH-SEE-SSTS CS
  Lipoprotein_9  96 eGatiavpndpsnegRaLllLekagLikLkdg.kgllatvkdIteNpknLkikeleaaqlpralddvdaavintnyalkagldpkkdalfeedkds 190
                    +G++++vpn psne+Ra l+Le+ g++k+k + + ++ + ++I++Np ++++ke++ aq+ ral dvd  +i++n+a+++g++ ++++   e++ s
     CTQ27777.1 124 AGTVVSVPNQPSNEYRAVLVLESLGWVKIKPDsDPATFSQRNIVDNPYKIVLKEMDNAQQVRALPDVDYGLIQGNFAVSSGMSLTSALK-LEAATS 218
                    ******************************88689999*********************************************977655.55578* PP

                    SG-EEEEEETTCTTSHHHHHHHHHHTSHHHHHHHHHH..TTTSSE CS
  Lipoprotein_9 191 pyvniivvrekdkddeavkklveayqseevkkaiekk..ykgavv 233
                      +n++ v  k+++++  k++++ y+s e+kk+i  +  y+g  +
     CTQ27777.1 219 HFINVVTVAGKNQKAQFAKDIIDGYHSAEFKKYILSHpqYDGYLL 263
                    **********************************88755677665 PP

>> KNOX1  KNOX1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0011       9.8       2      14 ..      76      88 ..      75     108 .. 0.87
   2 ?    6.0   0.1    0.0011        10       3      13 ..     249     259 ..     247     266 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0011
       KNOX1  2 iKakIvsHPlYpq 14
                i a I++HP Y +
  CTQ27777.1 76 IEANIMQHPVYLK 88
                679********65 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0011
       KNOX1   3 KakIvsHPlYp 13 
                 K  I+sHP+Y 
  CTQ27777.1 249 KKYILSHPQYD 259
                 788*******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2063.55
//
Query:       CTQ27778.1  [L=341]
Description: DL-methionine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-35  122.1   0.0    3.6e-35  121.4   0.0    1.3  1  ABC_tran     ABC transporter
      6e-18   64.5   0.1    1.2e-17   63.5   0.1    1.6  1  NIL          NIL domain
    8.6e-06   25.8   2.3      0.042   13.7   0.1    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    3.9e-05   23.2   0.7     0.0002   20.9   0.7    1.9  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00061   20.1   0.3     0.0047   17.2   0.3    2.2  1  AAA_22       AAA domain
     0.0063   16.9   0.1      0.014   15.7   0.1    1.9  1  AAA_16       AAA ATPase domain
     0.0066   16.2   0.0      0.012   15.3   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
     0.0097   16.4   0.1      0.018   15.5   0.1    1.4  1  AAA_23       AAA domain
  ------ inclusion threshold ------
      0.023   14.4   0.0      0.089   12.5   0.0    2.1  2  AAA_30       AAA domain
       0.04   13.8   0.0       0.08   12.8   0.0    1.5  1  RsgA_GTPase  RsgA GTPase
      0.045   13.8   0.0       0.13   12.4   0.0    1.8  1  MMR_HSR1     50S ribosome-binding GTPase
      0.071   11.9   0.8          5    5.8   0.1    2.5  2  ABC_ATPase   Predicted ATPase of the ABC class
      0.079   12.6   0.0       0.14   11.8   0.0    1.3  1  PA28_beta    Proteasome activator pa28 beta subunit
        0.1   13.1   0.0       0.21   12.1   0.0    1.5  1  AAA_18       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   0.0   2.8e-38   3.6e-35       1     137 []      25     173 ..      25     173 .. 0.89

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 2.8e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTC.HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxx.xx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren.........esdee.ie 86 
                 l++++l++++g + +i+G +GaGKStLl+l+ +l++p eGe+ll+g++l+    q+l+  +k ig+++q+ +l + +tv  n          +++   +
  CTQ27778.1  25 LQDINLSIERGDIFGIIGYSGAGKSTLLRLINRLETPGEGEVLLNGEPLQAcsgQRLQAIKKDIGMIFQNFNLLNSKTVFHNiaiplilqgRDKAFiQA 123
                 789************************************************************************************998733333233 PP

                 HHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  87 kalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++++ l  ++   ++++s p++LSgGqkqrv +aral+++p++ll+DE+t+
  CTQ27778.1 124 RVAELLAFVD-LSDKIHSYPNELSGGQKQRVGIARALATNPSVLLCDEATS 173
                 4444445555.455667999*****************************96 PP

>> NIL  NIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.1   9.5e-21   1.2e-17       3      71 ..     270     338 ..     268     340 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 9.5e-21
                 EEEEEES-S-SS-HHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTT-EE CS
         NIL   3 irltftgksavePllshlvrqlglevnIlqGsveriqgtpfGqlvielsgsqesiaaalqylrkrnvdv 71 
                 +rl f g++a++P++ hl+r++ +evnIl++s++++qg+ +G ++ +l g++++ ++a+ +l + +v++
  CTQ27778.1 270 LRLEFVGATAQKPIINHLIREYAVEVNILFASMSEVQGRILGFMIMQLLGEPDETERAITHLVDAGVKI 338
                 8***************************************************************99986 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.4   9.5e-05      0.12       1      24 [.      37      60 ..      37     143 .. 0.71
   2 !   13.7   0.1   3.3e-05     0.042     234     302 ..     142     208 ..     123     209 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.5e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                + ++iG  g+GKS+LL+++  l  
  CTQ27778.1 37 IFGIIGYSGAGKSTLLRLINRLET 60
                578****************98843 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.3e-05
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSplll 302
                 ++elS G+k+  +++ al+  +   s+ll DE  + L+P+ +  +l ll ++++r g+ ++l TH  +++
  CTQ27778.1 142 PNELSGGQKQRVGIARALATNP---SVLLCDEATSALDPHTTVQILLLLqEINRRYGITIVLITHEMSVI 208
                 5678999999988888888877...*********************999777777**********87765 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.7   1.5e-07    0.0002      29     211 ..      40     217 ..      25     225 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.5e-07
                 EEESTTSSHHHHHHHHHHHCTT.TTT.TTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  29 ivGpNGSGKsnlldAilFvLGersak.klrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsel 126
                 i+G  G+GKs ll  i  +    + +  l  e l++    s ++ ++ k ++ ++f+n +   + ++   +i   ++ +g+ + +i+ + ++     +l
  CTQ27778.1  40 IIGYSGAGKSTLLRLINRLETPGEGEvLLNGEPLQAC---SGQRLQAIKKDIGMIFQNFNLL-NSKTVFHNIAIPLILQGRDKAFIQARVAELLAFVDL 134
                 6777777777777766332222222202233333322...3456666677788888877765.555556788899999999999*************** PP

                 HHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 127 lesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgv 211
                   + + ++++LSgG+k+ v +a  +A++   p ++ l De  +aLD + + ++  ll+e + +    ++ i+++  +++k  + v v
  CTQ27778.1 135 SDKIHSYPNELSGGQKQRVGIARALATN---P-SVLLCDEATSALDPHTTVQILLLLQEINRRygITIVLITHEMSVIQKICHKVAV 217
                 **********************999875...4.46688********************88777224555566666666665444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   3.7e-06    0.0047       8     129 ..      38     202 ..      32     210 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.7e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee......................erpevvfvtlpsstsskdllrellralglelka.............. 70 
                   ++G sG+GK+tllr + +  +      e                      ++ + +f + + ++ sk+++++++  l l++ +              
  CTQ27778.1  38 FGIIGYSGAGKSTLLRLINRLETPG----EgevllngeplqacsgqrlqaikKDIGMIFQNFNLLN-SKTVFHNIAIPLILQGRDkafiqarvaellaf 131
                 5599************999987433....2456786777777777555555333333333333333.44444444444444333377*99999999999 PP

      AAA_22  71 .........erlsseellealeqalrarav...ielliiDEaqh.lrseealeeLrsllnl.srkgvqliLvG 129
                          ++++++    + ++   ara    +++l+ DEa   l++++ ++ L  l+++ +r+g++++L+ 
  CTQ27778.1 132 vdlsdkihsYPNELSG--GQKQRVGIARALatnPSVLLCDEATSaLDPHTTVQILLLLQEInRRYGITIVLIT 202
                 9999997653333333..33333333333344888*********9975666676766666677********96 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.1e-05     0.014      26      63 ..      37      75 ..      20     263 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-05
      AAA_16 26 lvllsGesGvGKsslvrellralekdg.gif.lrgkcdql 63
                +  ++G+sG GKs+l+r +  +le+ g g + l+g+  q 
  CTQ27778.1 37 IFGIIGYSGAGKSTLLRLIN-RLETPGeGEVlLNGEPLQA 75
                66699**************9.6777733444455555444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.5e-06     0.012      17      40 ..      30      53 ..      24      70 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.5e-06
      AAA_29 17 ieidlkgatlltGpsGsGKSTllD 40
                ++i++ +++ ++G sG+GKSTll 
  CTQ27778.1 30 LSIERGDIFGIIGYSGAGKSTLLR 53
                5666556999************95 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.4e-05     0.018      14      39 ..      27      55 ..      18      58 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
      AAA_23 14 eidF...skgltlItGpNGaGKTTildAi 39
                +i++      ++ I+G  GaGK+T+l+ i
  CTQ27778.1 27 DINLsieRGDIFGIIGYSGAGKSTLLRLI 55
                5666665557****************988 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     7e-05     0.089      20      82 ..      37     156 ..      28     205 .. 0.58
   2 ?   -2.6   0.0       3.1   3.9e+03     131     151 ..     224     244 ..     223     280 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7e-05
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrvi.....glAptgkaAkvLaeelgieastiakllkrlk................................ 81 
                 +  + G+ G+GK+t+l+ ++++ +  +g+v+     + A +g+  +++++++g+  ++ + l +++                                 
  CTQ27778.1  37 IFGIIGYSGAGKSTLLRLINRLETPGEGEVLlngepLQACSGQRLQAIKKDIGMIFQNFNLLNSKTVfhniaiplilqgrdkafiqarvaellafvdls 135
                 67799**************99998887777744444456666666666677776444433333222233344445555555555555555555555555 PP

      AAA_30  82 ....................g 82 
                                     +
  CTQ27778.1 136 dkihsypnelsggqkqrvgiA 156
                 555555555555555555543 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.1
      AAA_30 131 VeaGgvlrdlveaagigtaeL 151
                 Ve+G+v+++ ++ +++ ta+ 
  CTQ27778.1 224 VEQGAVFDLFAQPQHPVTASF 244
                 788888888865444444444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.2e-05      0.08      96     120 ..      31      56 ..      11      82 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.2e-05
                  HCTT.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  96 llkd.ktsvlvGqSGvGKStLinall 120
                   ++  ++  ++G SG+GKStL+  ++
   CTQ27778.1  31 SIERgDIFGIIGYSGAGKSTLLRLIN 56 
                  5554478889**********997765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.9e-05      0.13       3      19 ..      39      55 ..      37      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.9e-05
                EEEESTTSSHHHHHHHH CS
    MMR_HSR1  3 aivGrpNvGKStLinal 19
                +i+G++ +GKStL++ +
  CTQ27778.1 39 GIIGYSGAGKSTLLRLI 55
                8************9865 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0039         5     240     265 ..      30      56 ..      28      58 .. 0.90
   2 ?    4.0   0.1     0.014        18     323     352 ..     145     174 ..     135     228 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0039
                 EEE-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAle 265
                 + i +G ++ I+G    GKsTLL+ ++
  CTQ27778.1  30 LSIERGdIFGIIGYSGAGKSTLLRLIN 56 
                 6799999****************9776 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.014
                 --HHHHHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 323 ASGStsqAanimealeagakllLiDEDtsA 352
                  SG   q + i++al  + ++lL DE tsA
  CTQ27778.1 145 LSGGQKQRVGIARALATNPSVLLCDEATSA 174
                 5999999999******************99 PP

>> PA28_beta  Proteasome activator pa28 beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.14      14     136 ..      83     209 ..      78     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
   PA28_beta  14 klkpeieeliekl...nkvklwiqlliPkiedGnnfGVsvQeevleels..rveeeaanlldqiskyfleraklvskllkyphvedyrealeelDekql 107
                  +k++i  +++++   n+ +++ ++ iP i +G +    +Q  v e l+  ++++++ ++ +++s    +r  +++ l+ +p v  + ea   lD ++ 
  CTQ27778.1  83 AIKKDIGMIFQNFnllNSKTVFHNIAIPLILQGRDKA-FIQARVAELLAfvDLSDKIHSYPNELSGGQKQRVGIARALATNPSVLLCDEATSALDPHTT 180
                 5566655555555111444678888899999998864.5999999988722557999****************************************** PP

   PA28_beta 108 lslrlvlldlrnlYavlydlitKNieKik 136
                 +++ l l ++   Y + + lit  ++ i+
  CTQ27778.1 181 VQILLLLQEINRRYGITIVLITHEMSVIQ 209
                 ***************99999998877665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00017      0.21       3      44 ..      40      97 ..      39     117 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00017
      AAA_18  3 ltGtpGvGKttlakeLskrlgf.................gvnlrdvakenglllevdpe 44
                + G++G+GK+tl + +++++                   g++l+ + k+ g+ + +++ 
  CTQ27778.1 40 IIGYSGAGKSTLLRLINRLE-TpgegevllngeplqacsGQRLQAIKKDIGMIFQNFNL 97
                89**************8874.33555556666666666777777666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2523.12
//
Query:       CTQ27779.1  [L=222]
Description: DL-methionine transporter subunit; membrane component protein of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-21   75.7  16.1    5.4e-21   75.2  16.1    1.2  1  BPD_transp_1   Binding-protein-dependent transport system inn
  ------ inclusion threshold ------
        3.5    6.3   6.3       0.41    9.4   1.0    1.9  2  O-antigen_lig  O-antigen ligase like membrane protein


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2  16.1   6.1e-25   5.4e-21       1     184 [.      36     220 ..      36     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 6.1e-25
  BPD_transp_1   1 gillGilaa......lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralG 91 
                   g++lGi++          n ++ ++l pli+vl+slP+++l+i+++ +  +l + + +  ++i+ l+++ apy+ +++++ l +++++  eaa a+G
    CTQ27779.1  36 GVPLGIVLVvcrpggIVANPVVHQALNPLINVLRSLPFIILLIVILPFTRLLVGTTIGTAGAIVPLIVFVAPYIARLVESSLLEVDEGILEAADAMG 132
                   56666666666666677799************************99777777777788888************************************ PP

  BPD_transp_1  92 asrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprvr 184
                   a++ q++++ +lP a+ ++i  l  a +gllg+++++ ++g++ G+g+l ++   ++       +++l++++++++++ ++  l + l++r+r
    CTQ27779.1 133 ATPLQTVWHFMLPEAAASLILALTTATIGLLGATAMAGTVGGG-GIGDLAITYGYQRFDV----FATLTTALVLIVIVQLIQTLGTRLARRLR 220
                   *****************************************54.6887766544333333....57889999999999999999999999988 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.0   4.6e-05      0.41     196     234 ..      72     111 ..      54     119 .. 0.79
   2 ?   -1.0   0.4     0.064   5.7e+02     195     216 ..     195     216 ..     180     217 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 4.6e-05
  O-antigen_lig 196 kfiiilllli.llllllGTKvalfGliiiliialilllik 234
                     fii+l++++ ++ ll+GT +++ G+i+ li++++ ++ +
     CTQ27779.1  72 PFIILLIVILpFTRLLVGTTIGTAGAIVPLIVFVAPYIAR 111
                    4555555444277899*******************99988 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.064
  O-antigen_lig 195 ikfiiillllillllllGTKva 216
                    +++ ++l++++ l+  lGT++a
     CTQ27779.1 195 LTTALVLIVIVQLIQTLGTRLA 216
                    6677888888888999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1632.90
//
Query:       CTQ27780.1  [L=399]
Description: tyrosine aminotransferase, tyrosine-repressible, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-80  270.2   0.0    3.3e-80  270.0   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.0   0.0   1.8e-84   3.3e-80       2     362 ..      27     392 ..      26     393 .. 0.97

  Alignments for each domain:
  == domain 1  score: 270.0 bits;  conditional E-value: 1.8e-84
                    EEEESSSSSTTSTTSS.HHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT- CS
  Aminotran_1_2   2 dvinLgsneylgdsgk.ptlpevakaekegalaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllklnpgd 94 
                    d++nL+++ y  +++  p+l++v++a+ +  ++++++  y+p++gl+ ++ a+  +l+  ++++l   r a++++++G+gal + ++fl +++p++
     CTQ27780.1  27 DKVNLSIGLYYNEQAIiPQLEAVRQAADRLQSQQQKASLYLPMEGLAPYRRAVQTLLFgdNHPALRAGRIATIQTLGGSGALKVGADFLKRYFPDS 122
                    79*************************9999**************************99999********************************** PP

                    EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETT CS
  Aminotran_1_2  95 eilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaY 190
                    +++v+dpt++++  i+  +g+ev++yp+ +++++++++ a+++al+++p++++   v+l+ ++hNPtG+++t+e++  ++++   ++l++f+D aY
     CTQ27780.1 123 AVWVSDPTWENHVAIFAGAGFEVHTYPWFDSATRGVNFPAMLAALQQLPPRSI---VLLHPCCHNPTGADLTREQWDRVIEVLIGRELIPFLDIAY 215
                    *****************************************************...**************************************** PP

                    TTCBSSSS.HTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH.......HHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHH...H CS
  Aminotran_1_2 191 agfvfgsl.davatranveeepnllivgslsKafGlaGeRvGyilgna.......avvsqlrklsrpfls..ssllqaavaaalsdallkqs...e 273
                    +gf  g   da+a+ra ++++   l+ +s+sK f+l+GeRvG +++++       +v+ ql+  +r+ +s  +  ++++v+++l+d++l +    e
     CTQ27780.1 216 QGFGRGLDeDAYAIRAIASAGLTALVSNSFSKIFSLYGERVGGLSVVCdnadaagRVLGQLKATVRRNYSspPGFGAQVVSQVLNDPELNALwqeE 311
                    ******559*************************************999***************************************9877999* PP

                    HHHHHHHHHHHHHHHHHHHHHS....TEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHH CS
  Aminotran_1_2 274 leemrqrlqkrrkelrdeLael....glkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelvea 362
                    +e+mr r+ ++r  l+++L+++    ++++l  q gmf++t++sa       ++L++e+g+y+++        ++R++vAgl++ ++ ++++a
     CTQ27780.1 312 VEAMRTRISAMRVALVKALQAAlptgDFSYLLTQRGMFSYTGFSAD----QVDVLRQEHGIYLIA--------SGRVCVAGLNHGNIARVASA 392
                    **********************************************....4555***********........9**************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2925.38
//
Query:       CTQ27781.1  [L=204]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-32  111.1  16.0    5.3e-32  110.9  16.0    1.0  1  YitT_membrane    Uncharacterised 5xTM membrane BCR, YitT fami
  ------ inclusion threshold ------
        8.9    5.8  14.8       0.65    9.5   8.9    1.8  2  ABC2_membrane_5  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> YitT_membrane  Uncharacterised 5xTM membrane BCR, YitT family COG1284
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9  16.0   5.9e-36   5.3e-32       3     180 ..      19     194 ..      17     200 .. 0.93

  Alignments for each domain:
  == domain 1  score: 110.9 bits;  conditional E-value: 5.9e-36
  YitT_membrane   3 llivlgsllyAlginlfllpnkiatGGvtGialilnyltglpigilvlilNipllilgykilgkkfvlktlvailllsvfldll.alppvkpltnd 97 
                    l +++g+l++++gi lf  +   +tGG+ G+a +++y t+lp+g++++ +N+p+  l+++ +g  f+lkt++a+ l+s+f dl  ++   +    +
     CTQ27781.1  19 LALLFGTLMISFGIILFRQAG-ALTGGTAGMAFLIHYATHLPFGVVFFAINLPFYWLSVRRMGAAFTLKTFCAVGLVSLFSDLHgYF--IHVDRLN 111
                    6789**********9987655.568***********************************************************443..3344569 PP

  YitT_membrane  98 pllaaifggvllGiGvGivfragastGGtdiialilnkktglsvgkilliidlvivllagfvfdietalyslitlfvvskvid 180
                    p +a++fg +++GiG  ++fr++as GG+ i+al+l+ k g+  gk+ +++d++iv+++++v+++   l+s+++ ++   +i 
     CTQ27781.1 112 PYYATLFGNIMVGIGFVVLFRHKASLGGVNILALYLQDKSGIRAGKFQMVVDACIVTASLWVVSLPMLLVSVLGAVILNSIIA 194
                    9***************************************************************************9988875 PP

>> ABC2_membrane_5  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   8.9   7.3e-05      0.65      86     192 ..      20     126 ..      18     133 .. 0.80
   2 ?   -0.5   0.3     0.087   7.8e+02     190     197 ..     175     182 ..     140     198 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 7.3e-05
  ABC2_membrane_5  86 vlililiailitlllliiavlikgnvtisevllsiliglvialiflaivlPlyfkfgvekgrivliiiifgiifllvaifslsklelslidlsn 179
                      +l++++++i ++++l+  a+ ++g      +l+ ++  l ++++f+ai lP+ ++++v+++  ++ +  f++++l++ ++ l ++ +++  l+ 
       CTQ27781.1  20 ALLFGTLMISFGIILFRQAGALTGGTAGMAFLIHYATHLPFGVVFFAINLPF-YWLSVRRMGAAFTLKTFCAVGLVSLFSDLHGYFIHVDRLNP 112
                      688999999999999999999999999999*********************7.68888999999999999998888888888888777777766 PP

  ABC2_membrane_5 180 y.illiillviill 192
                      y + l++ +++++ 
       CTQ27781.1 113 YyATLFGNIMVGIG 126
                      64444455544443 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.087
  ABC2_membrane_5 190 illliivS 197
                      +l +++vS
       CTQ27781.1 175 SLPMLLVS 182
                      22222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1633.78
//
Query:       CTQ27782.1  [L=159]
Description: Regulator for leucine (Or lrp) regulon and high-affinity branched-chain amino acid transport system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-17   61.6   0.0    8.2e-17   60.9   0.0    1.3  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    4.4e-14   52.0   1.1    8.2e-14   51.2   0.7    1.7  2  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    1.5e-12   46.9   2.7    2.4e-12   46.2   1.5    1.9  2  HTH_24          Winged helix-turn-helix DNA-binding
     0.0025   17.7   0.2     0.0053   16.7   0.2    1.5  1  MarR            MarR family
     0.0026   17.7   0.4      0.014   15.3   0.2    2.2  3  HTH_Crp_2       Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.031   14.2   0.1      0.082   12.8   0.0    1.7  2  TrmB            Sugar-specific transcriptional regulator TrmB
      0.037   13.8   0.5        0.1   12.4   0.5    1.8  1  HTH_IclR        IclR helix-turn-helix domain
      0.042   14.0   0.1       0.14   12.4   0.1    1.7  2  HTH_34          Winged helix DNA-binding domain
      0.055   13.5   0.2       0.17   12.0   0.2    1.8  1  HTH_20          Helix-turn-helix domain
       0.17   11.6   0.0       0.28   11.0   0.0    1.3  1  BCIP            p21-C-terminal region-binding protein


Domain annotation for each model (and alignments):
>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   4.6e-20   8.2e-17       1      74 [.      70     143 ..      70     144 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 4.6e-20
                     EEEEE-GGG.TTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEEE CS
  AsnC_trans_reg   1 vlvslepgh.peqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivle 74 
                     ++v+l  +h p+ +e+f + l e++ ++ ++++tGd+dyll+v+v+dl  l++++++ la+++gva+ +t +vl+
      CTQ27782.1  70 IEVRLL-NHtPQCVESFHQMLSEVDAILDAWKTTGDADYLLRVTVPDLPGLSHLISHILAQNKGVAHLKTAVVLN 143
                     789999.666***************************************************************98 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.7   4.6e-17   8.2e-14       1      42 []       4      45 ..       4      45 .. 0.95
   2 ?   -4.0   0.0       7.8   1.4e+04       9      14 ..     142     147 ..     138     149 .. 0.59

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 4.6e-17
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   +D++D+kIL +Lq+++R++++eL+e +GlS+s++ rR  +Le
     CTQ27782.1  4 IDDYDLKILTLLQANGRLTNQELSELIGLSASQCSRRRIALE 45
                   6************************************77765 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 7.8
  HTH_AsnC-type   9 LeaLqe 14 
                    L+ L e
     CTQ27782.1 142 LNRLKE 147
                    555555 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   1.5   1.4e-15   2.4e-12       2      44 ..       5      47 ..       4      50 .. 0.89
   2 ?   -1.1   0.0      0.78   1.4e+03      38      45 ..     142     149 ..     138     151 .. 0.68

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 1.4e-15
      HTH_24  2 detdrkILelLqknprisqreLAerlglSpstvnrrlkrLeee 44
                d++d+kIL lLq+n+r++++eL+e +glS s ++rr   Le++
  CTQ27782.1  5 DDYDLKILTLLQANGRLTNQELSELIGLSASQCSRRRIALEQA 47
                99*********************************96666666 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.78
      HTH_24  38 lkrLeeeG 45 
                 l+rL+e+G
  CTQ27782.1 142 LNRLKENG 149
                 56777776 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   2.9e-06    0.0053       6      47 ..       9      50 ..       7      54 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.9e-06
                HHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR  6 fviLrilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                ++iL++l  +g l+++eL + +g+s s  +r   +Le++ li
  CTQ27782.1  9 LKILTLLQANGRLTNQELSELIGLSASQCSRRRIALEQAQLI 50
                68*************************************998 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2     8e-06     0.014      21      52 ..      20      51 ..       6      58 .. 0.88
   2 ?   -1.1   0.0         1   1.9e+03      55      67 ..     110     121 ..      91     122 .. 0.67
   3 ?   -2.8   0.0       3.6   6.5e+03      41      49 ..     141     149 ..     128     151 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8e-06
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglis 52
                +lt++el++++Gl+ +++sr   +L++++li 
  CTQ27782.1 20 RLTNQELSELIGLSASQCSRRRIALEQAQLIL 51
                79**************************9995 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1
                 EEEEES-HHHHHH CS
   HTH_Crp_2  55 rririldleaLra 67 
                 r ++++dl +L +
  CTQ27782.1 110 R-VTVPDLPGLSH 121
                 5.89999988865 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3.6
                 HHHHHHHTT CS
   HTH_Crp_2  41 ilseLkreg 49 
                 +l++Lk+ g
  CTQ27782.1 141 VLNRLKENG 149
                 677887776 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.6e-05     0.082       4      41 ..       2      39 ..       1      50 [. 0.89
   2 ?   -1.9   0.0       1.7   3.1e+03      40      50 ..     139     149 ..     127     152 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.6e-05
                CHHHHHCCCHCHHHHHHCCCHHCHHCCCTTSSCHCHHH CS
        TrmB  4 lGLseyEakvYlaLlklgpatadeiaeelgvprskvYe 41
                +++ +y+ k+ + L ++g++t +e++e +g++ s++ +
  CTQ27782.1  2 YNIDDYDLKILTLLQANGRLTNQELSELIGLSASQCSR 39
                7899*******9999*****************998765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
                 HHHHHHHHHCT CS
        TrmB  40 YevLrsLedkG 50 
                   vL++L++ G
  CTQ27782.1 139 AVVLNRLKENG 149
                 56899999988 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.5   5.7e-05       0.1       7      38 ..      10      40 ..       9      50 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.7e-05
                HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHH CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRl 38
                 iL +l + ++ lt++el++ +gl+ S  +R 
  CTQ27782.1 10 KILTLLQANGR-LTNQELSELIGLSASQCSRR 40
                67777777777.9**************98875 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   7.8e-05      0.14       3      44 ..       9      50 ..       8      53 .. 0.95
   2 ?   -2.0   0.0       2.3   4.2e+03      58      79 ..      74      95 ..      68      96 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.8e-05
      HTH_34  3 lavlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYi 44
                l++l++L ++ + + +el+e +++++++ s    +Le+a+ i
  CTQ27782.1  9 LKILTLLQANGRLTNQELSELIGLSASQCSRRRIALEQAQLI 50
                89************************************9865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.3
      HTH_34 58 llriTpeGreafkkyvkaLksl 79
                ll+ Tp+  e f + +++++++
  CTQ27782.1 74 LLNHTPQCVESFHQMLSEVDAI 95
                5667888899999998888766 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   9.3e-05      0.17      13      54 ..       9      50 ..       5      54 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.3e-05
                HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTE CS
      HTH_20 13 rrilraLaraegltaselaerldlskntlsyHLrvLeeagLv 54
                ++il +L  ++ lt  el e+++ls +++s++  +Le+a L+
  CTQ27782.1  9 LKILTLLQANGRLTNQELSELIGLSASQCSRRRIALEQAQLI 50
                789*****************************999*999998 PP

>> BCIP  p21-C-terminal region-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00015      0.28      66     145 ..      11      96 ..       4     113 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
        BCIP  66 llsvlnlkkhkekecikqlkeyllekakksasskkklkklLss.......skdkkvglliseRliNiPvevvpplykmLleeiewaq 145
                 +l++l  + + +++ +++l+ +  +++++     ++ + +L         +  +++  li  Rl+N  ++ v   ++mL  e+++  
  CTQ27782.1  11 ILTLLQANGRLTNQELSELIGLSASQCSRRRIALEQAQLILGYharlapdAAGQEMLGLIEVRLLNHTPQCVESFHQMLS-EVDAIL 96 
                 788999988888999999999999999999998999999997799999973446677799*************9999985.566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1233.60
//
Query:       CTQ27783.1  [L=459]
Description: aromatic amino acid transporter (APC family) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.3e-114  382.7  42.2   2.7e-114  382.4  42.2    1.0  1  AA_permease    Amino acid permease
      2e-39  135.6  44.9    2.6e-39  135.3  44.9    1.1  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
        8.7    6.6  21.6       0.29   11.3   1.8    3.8  3  DPM3           Dolichol-phosphate mannosyltransferase subunit


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.4  42.2  4.6e-118  2.7e-114       1     471 [.      17     447 ..      17     453 .. 0.97

  Alignments for each domain:
  == domain 1  score: 382.4 bits;  conditional E-value: 4.6e-118
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ialgg++Gtglf+g++ +++ aGp ++ll+y++agv+ f++m++lge+++  p++g+f+++a r++gp +Gf+ G+ny++++++v ++elta++
   CTQ27783.1  17 HIQLIALGGAVGTGLFLGIAQTIRMAGP-SVLLGYAIAGVIAFFIMRQLGEMVVEEPVAGSFSHFANRYWGPFAGFMSGWNYWVLYVLVSMAELTAVG 113
                  99**************************.********************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeeg 196
                  i+iq+w   +++p +w  +a+f+v++ +inl  vkvyge ef+++++k+ aii++i +g  ll++g++ ++a++++l+++g+    ++p+g       
   CTQ27783.1 114 IYIQYW--WPEVP-TWLSAAIFFVAINAINLTHVKVYGELEFWFSIVKVAAIISMIAFGCYLLFSGHGGPAATVANLWQDGG----FFPNG------- 197
                  ******..*****.********************************************************************....9****....... PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplina 294
                   +++ ++++++++f+f G elv+i+a+E+++P k+iPka++qv++ri++fYv+sl+++ +l p+ +           spfv++++  +++++a+ +n+
   CTQ27783.1 198 -ITGLVMAMAVIMFSFGGLELVGITAAEADEPHKTIPKATNQVIYRILLFYVGSLAVLLSLYPWRNVVEGG------SPFVLIFHAIDSNIVANALNL 288
                  .*****************************************************************44444......9******************** PP

  AA_permease 295 viltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfRk 392
                  v+ltaals++ns++y+ sR+l+ la++g aP+ l +v+ rg Pl a+++s+++ +l+++++++ ++  ++f+ l+a++ ++ +i+w +i++++l+fR+
   CTQ27783.1 289 VVLTAALSVYNSCVYCNSRMLFGLAQQGNAPRALLRVNHRGIPLTALAVSAVATALCVVINYVMPG--KAFALLMALVVAALVINWAMICITHLKFRR 384
                  ******************************************************************..****************************** PP

  AA_permease 393 alkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvk 471
                   ++  g+      f++  +pl+ +l+l++l +il ++ l++ ++             +++ li +++li+  g+ l+ k
   CTQ27783.1 385 DMQRAGK---VTAFQSFAYPLTNWLCLLFLAAILGVMYLTPDIR-------------ISVCLIPVWLLILAAGYLLRRK 447
                  *988888...88*******************************9.............9999999999999999888877 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3  44.9   4.3e-43   2.6e-39       9     404 ..      21     420 ..      16     442 .. 0.86

  Alignments for each domain:
  == domain 1  score: 135.3 bits;  conditional E-value: 4.3e-43
  AA_permease_2   9 lvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaasy 102
                    +++g ++g+g f      +  +gp+++l + ia +i +++++  + E+    p  g  ++++ + +g++++f+s+w +w+ yv+v ++ l++++ y
     CTQ27783.1  21 IALGGAVGTGLFLGIaqTIRMAGPSVLLGYAIAGVIAFFIMR-QLGEMVVEEPVAGSFSHFANRYWGPFAGFMSGWNYWVLYVLVSMAELTAVGIY 115
                    789999****99985545555888888888887777766555.445553339******************************************** PP

  AA_permease_2 103 llnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitv.dgggfssl....stetdtffpngwpgvllg 193
                    +++++ p++     +t l a+++++ + +in+ ++k ++ + ++  i+k+   +i +i++g++++ +g+g + +     ++++ ffpng +g +++
     CTQ27783.1 116 IQYWW-PEV-----PTWLSAAIFFVAINAINLTHVKVYGELEFWFSIVKV-AAIISMIAFGCYLLfSGHGGPAAtvanLWQDGGFFPNGITGLVMA 204
                    ***99.675.....56688999****************************.599999999999883446666557756333335************ PP

  AA_permease_2 194 llivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilialsllga 287
                    ++++++sf+G e +   + e+ +  k++pka++ ++  +l++y++   ++l   p+ ++ + ++  s++ l f+a  + +va ++++++  ++l  
     CTQ27783.1 205 MAVIMFSFGGLELVGITAAEADEphKTIPKATNQVIYRILLFYVGSLAVLLSLYPWRNVVE-GG--SPFVLIFHAIDSNIVANALNLVVLTAALSV 297
                    ********************55445*********************************997.33..479*************************** PP

  AA_permease_2 288 intavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphlkr.. 381
                     n++v+ +sr+l+ la++g  Pr + +vn++g+p+ a+ ++a+ + +++++ ++ +++a+ +l+++ + +l+i ++++ i+ l+ r+++ + ++  
     CTQ27783.1 298 YNSCVYCNSRMLFGLAQQGNAPRALLRVNHRGIPLTALAVSAVATALCVVINYVMPGKAFALLMALVVAALVINWAMICITHLKFRRDMQRAGKvt 393
                    *********************************************99998888999**********************************999988 PP

  AA_permease_2 382 ....pgkilvaiigalfllfllvalff 404
                        ++++l++++ +lfl  +l ++++
     CTQ27783.1 394 afqsFAYPLTNWLCLLFLAAILGVMYL 420
                    877666678888777776666655444 PP

>> DPM3  Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.8   4.9e-05      0.29       6      55 ..     125     174 ..     122     176 .. 0.84
   2 ?   -1.8   0.1      0.63   3.8e+03      28      52 ..     279     303 ..     237     322 .. 0.56
   3 ?    3.1   7.1     0.018   1.1e+02       1      54 [.     386     444 ..     354     446 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.9e-05
        DPM3   6 ktlalallllalwlalllrlvslplskvqdevvpvlPlwalvlfGaysla 55 
                  +l++a++++a+ ++ l+++      + + ++v v+ ++ +++fG+y+l+
  CTQ27783.1 125 TWLSAAIFFVAINAINLTHVKVYGELEFWFSIVKVAAIISMIAFGCYLLF 174
                 588889999988888887665444599*********************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.63
        DPM3  28 lplskvqdevvpvlPlwalvlfGay 52 
                  ++   + ++v+++  + +   ++y
  CTQ27783.1 279 SNIVANALNLVVLTAALSVYNSCVY 303
                 3332333333334444444444444 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.018
        DPM3   1 Mtraqktlalallllal..wlalllrlvslpl...skvqdevvpvlPlwalvlfGaysl 54 
                 M+ra k+ a+ +++  l  wl+ll+    l +   ++  +  v ++P+w+l+l + y+l
  CTQ27783.1 386 MQRAGKVTAFQSFAYPLtnWLCLLFLAAILGVmylTPDIRISVCLIPVWLLILAAGYLL 444
                 556666555555444333366655433322211237888888***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3312.30
//
Query:       CTQ27784.1  [L=248]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.013   15.8   4.4       0.75   10.0   0.0    2.2  2  DUF3093          Protein of unknown function (DUF3093)
       0.03   14.4   0.7       0.03   14.4   0.7    2.0  2  DUF4337          Domain of unknown function (DUF4337)
       0.19   11.4   6.0        0.2   11.4   3.5    2.3  1  Neurensin        Neurensin
        0.2   11.5   8.2        1.1    9.2   0.1    3.1  3  YrhK             YrhK-like protein
        1.4    8.6   6.8          2    8.1   6.6    1.4  1  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
        3.5    7.6   6.5       0.25   11.2   0.6    2.0  2  DUF1418          Protein of unknown function (DUF1418)
        6.4    6.1  13.9        6.5    6.1   2.3    2.2  2  DUF373           Domain of unknown function (DUF373)


Domain annotation for each model (and alignments):
>> DUF3093  Protein of unknown function (DUF3093)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   2.8    0.0098        25      10      53 ..      41      82 ..      34     106 .. 0.56
   2 ?   10.0   0.0   0.00029      0.75      13      91 ..     130     213 ..     123     228 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0098
     DUF3093 10 lwwWllaalvalaaalvaaevglavavlv.aavlvalavvallal 53
                +w Wl+ al+   +a+v+  +++ +++   ++++v+++v  ++++
  CTQ27784.1 41 VWSWLVLALF---IAVVVQAISIMLSGRYpYLAIVLAFVGGIVMV 82
                6888888887...44444444433333333333333333333322 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00029
     DUF3093  13 WllaalvalaaalvaaevglavavlvaavlvalavvallalsrtrieVtd......geLrvgrarlplavvgrvealdaeakraa 91 
                 ++ +al+ l+a+++++ +g++++++ +a+ +++++      +r+ i V+         L ++   +pl+ v+ ve  +++ak + 
  CTQ27784.1 130 YPQGALA-LIAGIIILMIGMGIGGVFIAAGIVALCNGYRLQNRVVIGVSGesmiftPGLYADTYVIPLRDVAVVERSNNDAKVRL 213
                 5556666.789***************66666666666777788999999888899899*********999999988877777654 PP

>> DUF4337  Domain of unknown function (DUF4337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.7   1.2e-05      0.03     115     158 ..      37      82 ..      22      85 .. 0.75
   2 ?   -2.9   3.3       2.6   6.6e+03     143     157 ..     142     156 ..     133     166 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.2e-05
     DUF4337 115 dk...fdlasalLqiaIvlaaialltkkklllylslvlglvGlvlfl 158
                  +   + + +++L ia+v+ ai+++++ ++  yl++vl++vG ++++
  CTQ27784.1  37 RAdgvWSWLVLALFIAVVVQAISIMLSGRYP-YLAIVLAFVGGIVMV 82 
                 3344599999*****************8865.667777777777665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.6
     DUF4337 143 lylslvlglvGlvlf 157
                 ++l++++g+ G++++
  CTQ27784.1 142 IILMIGMGIGGVFIA 156
                 445555555555443 PP

>> Neurensin  Neurensin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.5   7.7e-05       0.2      37      72 ..     140     175 ..     105     189 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.7e-05
   Neurensin  37 esllwkvslvvgtlvlllGvtallvGylvprrlelv 72 
                 ++++  + + +g +++++G++al+ Gy +++r++  
  CTQ27784.1 140 GIIILMIGMGIGGVFIAAGIVALCNGYRLQNRVVIG 175
                 556667899**********************99865 PP

>> YrhK  YrhK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       1.9   4.8e+03      38      46 ..      40      48 ..      37      61 .. 0.71
   2 ?    9.2   0.1   0.00042       1.1      13      26 ..      83      96 ..      64     112 .. 0.75
   3 ?    6.2   0.5    0.0036       9.1       6      39 ..     142     176 ..     136     178 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.9
        YrhK 38 gvwlFliGS 46
                gvw +l+ +
  CTQ27784.1 40 GVWSWLVLA 48
                778877644 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00042
        YrhK 13 igsllFlvGSilfl 26
                 +s++FlvGS++ l
  CTQ27784.1 83 PASVIFLVGSLFSL 96
                3899*******999 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0036
        YrhK   6 islandiigsllFlvGSilflpnse.fwkwqiagv 39 
                 i l+ ++ ++++F+ + i++l n + +++ + +gv
  CTQ27784.1 142 IILMIGMGIGGVFIAAGIVALCNGYrLQNRVVIGV 176
                 55667889*************99998989988887 PP

>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.6   0.00078         2     120     203 ..       9      95 ..       1     146 [. 0.77

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00078
  PhoLip_ATPase_C 120 leglyqsliifflsylv.lddssfs.dgktndlqlfgtlvftalvlvvnlkvaletktwtliliililgsillyflfll.lyssllp 203
                      + gl+  +ii+f++  + ld+ + + + + ++++++ +l+ +++v+v  + ++l  ++  l ++++++g i+++ ++++ l+ sl++
       CTQ27784.1   9 WIGLFVNIIICFVARNLlLDEGQLNfHSRADGVWSWLVLALFIAVVVQAISIMLSGRYPYLAIVLAFVGGIVMVPASVIfLVGSLFS 95 
                      56788888888876655366666669****************************988888888888888887777777524444433 PP

>> DUF1418  Protein of unknown function (DUF1418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.6   9.8e-05      0.25      28      65 ..      53      90 ..      41     119 .. 0.70
   2 ?   -1.7   0.7         1   2.7e+03      45      60 ..     142     157 ..     135     173 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.8e-05
     DUF1418 28 svndylsLPgplsskeaaivmiflGvllllPaavalvw 65
                 v + +s+      +  aiv++f+G ++++Pa v+ + 
  CTQ27784.1 53 VVVQAISIMLSGRYPYLAIVLAFVGGIVMVPASVIFLV 90
                455555555555668889**************997664 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1
     DUF1418  45 aivmiflGvllllPaa 60 
                  i+mi +G++ +  aa
  CTQ27784.1 142 IILMIGMGIGGVFIAA 157
                 5788888886554443 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.3    0.0026       6.5     262     308 ..      38      84 ..       5     124 .. 0.67
   2 ?    5.5   4.2    0.0038       9.7     158     203 ..     129     172 ..     119     183 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0026
      DUF373 262 iygavewlalailtaslgkiideylkreekdiarllllpflvlaigl 308
                   g+  wl+la+++a+++++i+ +l++++  +a +l+ +  ++++ +
  CTQ27784.1  38 ADGVWSWLVLALFIAVVVQAISIMLSGRYPYLAIVLAFVGGIVMVPA 84 
                 445889*******************9987666555544444444322 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0038
      DUF373 158 LvplGlllliyalllllglpelalaiillllGlylllrGfgldell 203
                 + p G+l li ++++l+  +++ ++ ++++ G++ l  G++l++++
  CTQ27784.1 129 FYPQGALALIAGIIILM--IGMGIGGVFIAAGIVALCNGYRLQNRV 172
                 67889********9987..79*********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1003  (0.0559429); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 1718.97
//
Query:       CTQ27785.1  [L=64]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.029   14.4   0.0      0.029   14.4   0.0    1.0  1  DUF3867   Protein of unknown function (DUF3867)


Domain annotation for each model (and alignments):
>> DUF3867  Protein of unknown function (DUF3867)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.6e-06     0.029      28      85 ..       1      59 [.       1      64 [] 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-06
     DUF3867 28 lyyslaeGkltlsdfskkis.eYmeennisqekflniqkkllerYGldeeelekqlksl 85
                +yy l + +l +  ++ k + ++ e  n+  ekf    +++ e+ Gld +++e   ++ 
  CTQ27785.1  1 MYYTLGDTTLHFYRYQCKFYvAHWEGGNVMSEKFKSFIEQITEKTGLDAKRVETAARDY 59
                688888888888888877642678999**************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 473.04
//
Query:       CTQ27786.1  [L=372]
Description: putative oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-25   88.9   0.1    6.5e-25   88.3   0.1    1.3  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
    1.6e-13   50.7   0.0    2.6e-13   50.0   0.0    1.4  1  GFO_IDH_MocA_C   Oxidoreductase family, C-terminal alpha/beta
    7.9e-09   36.2   0.0    1.5e-08   35.3   0.0    1.4  1  NAD_binding_3    Homoserine dehydrogenase, NAD binding domain
    0.00012   22.5   0.0     0.0002   21.8   0.0    1.4  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
    0.00034   20.9   0.0     0.0013   18.9   0.0    1.9  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    0.00046   20.7   0.0    0.00085   19.9   0.0    1.4  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.1   2.2e-28   6.5e-25       1     119 [.      24     140 ..      24     141 .. 0.97

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 2.2e-28
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-S CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPlat 97 
                   +++a+iG+G++g+ +++pl +s ++++++ + ++d+e+ +  ++  +v + ++ e+ +++p++d+v++a+pn th+ la+ al+agkhv+++KP+++
    CTQ27786.1  24 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK--RDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLARLALNAGKHVVVDKPFTL 118
                   699**********************************999..79***************************************************** PP

                   SHHHHHHHHHHHHHHTS-EEEE CS
  GFO_IDH_MocA  98 tveeakelvelaekkgklvsvg 119
                   +++ea+el++lae+k++l+sv 
    CTQ27786.1 119 DMQEARELIALAEEKQRLLSVF 140
                   ******************9996 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   8.7e-17   2.6e-13       2     114 ..     154     258 ..     153     260 .. 0.88

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 8.7e-17
                     HHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSHHCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEEEEEEEEEETTE CS
  GFO_IDH_MocA_C   2 elIengklGevvsvdvwtldtragaeakkrwkrrkkksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaavmsvlnlekgsg 96 
                       Ie+g lG+v++++++++++r++ + ++r+++  ++++G++ dlg H iD++  LfG p+sv  ++   +++++ ae++d a   ++ l++ + 
      CTQ27786.1 154 QVIEQGTLGAVKHFESHFDRFRPEVRVRWREQN--VPGSGLWFDLGPHLIDQALQLFGLPQSVQGNI---ATLRDGAEINDWA---HVVLNYPAH 240
                     57************8777777766666666665..59******************************...7************...999***999 PP

                     EEEEEEECCTSSSEEEEE CS
  GFO_IDH_MocA_C  97 evitlesgvskglsiryv 114
                     +vi++ s    g s+r+ 
      CTQ27786.1 241 KVILHCSMLVAGGSSRFT 258
                     999999999988888876 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   4.9e-12   1.5e-08       1     112 [.      30     135 ..      30     139 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 4.9e-12
                    --SHHHHHHHHHHHH---SSEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGGG- CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqseielelvavadrdsllskdrkallasealtldlddliahldpdvvVEcasseavaelvlkaLkagkdvvtankgalad 96 
                    G+G +G+++ + l r+    +l+l++va rd   +++ k++l++ ++ ++ ++ ++h+d+d+vV + + +  a l+  aL+agk+vv+  k    d
     CTQ27786.1  30 GYGFVGKTFHAPLIRSVP--GLNLAFVASRD---EEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLARLALNAGKHVVV-DKPFTLD 119
                    99*********9999997..9**********...99999*************************88888888889999*******997.4555559 PP

                    HHHHHHHTSSSTTS-- CS
  NAD_binding_3  97 ealyeeLreaaeanga 112
                    ++  +eL+++ae++++
     CTQ27786.1 120 MQEARELIALAEEKQR 135
                    ************9987 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   6.7e-08    0.0002       1      96 [.      25     114 ..      25     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6.7e-08
                     EEEEETTTSHHHHHH.HHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTS.EE CS
  Semialdhyde_dh   1 kvaivGatGyvGqel.lrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeagv.kv 93 
                     ++a++G  G vG+ + + l+++ p ++l++++s+++   +k+++  +      ++  ++  + +  +vd+v+ a p+ ++++la+ +++ag  +v
      CTQ27786.1  25 NIALIG-YGFVGKTFhAPLIRSVPGLNLAFVASRDE---EKVKRDLP----DVTVIASPEAAVQHPDVDLVVIASPNATHAPLARLALNAGKhVV 111
                     699***.9*******6667777********999999...88888878....444444445555669***********************999677 PP

                     EES CS
  Semialdhyde_dh  94 iDl 96 
                     +D 
      CTQ27786.1 112 VDK 114
                     775 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   4.5e-07    0.0013       1     111 [.      26     129 ..      26     141 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.5e-07
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT- CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaCietgv 94 
                      + +iG+G+vG+ +   l r+ +  +   va+r++ek+++ +     v+++a     + +ea  ++   + dlvv +sp+  +++++++++ +g 
       CTQ27786.1  26 IALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDL---PDVTVIA-----S-PEA-AVQ-HPDVDLVVIASPNATHAPLARLALNAGK 108
                      679**********999999887766889********88876...2232222.....2.222.222.2578************************ PP

                      EEEE.SS-...BCGCCSCHCC CS
  Sacchrp_dh_NADP  95 hyvd.tsi...skeertnyal 111
                      h+v    +    +e+r++ al
       CTQ27786.1 109 HVVVdKPFtldMQEARELIAL 129
                      *87432222333555555555 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.8e-07   0.00085       2      92 ..      26     111 ..      25     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.8e-07
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHH..H-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEE CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaae..eadvvvlavkpedveevlselakdalkgklvi 92 
                    i++iG+G +g+++   l+++  +  ++ +++sr++ek++    ++   v+a + e a++  + d vv+a + + ++ +++ +   + +gk v+
     CTQ27786.1  26 IALIGYGFVGKTFHAPLIRSV-PGLNLAFVASRDEEKVKRDLPDVT--VIA-SPEAAVQhpDVDLVVIASPNATHAPLARLA---LNAGKHVV 111
                    9*******************4.667777788*******99999965..666.668899945566799999998888888776...44444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2912.53
//
Query:       CTQ27787.1  [L=247]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-42  143.0   0.0    9.9e-42  142.6   0.0    1.1  1  DeoRC           DeoR C terminal sensor domain
    1.3e-17   63.3   0.5    2.3e-17   62.5   0.5    1.4  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    3.8e-07   29.9   0.3    7.7e-07   29.0   0.3    1.5  1  HTH_11          HTH domain
    7.9e-06   25.7   0.2    2.2e-05   24.2   0.2    1.8  1  HTH_5           Bacterial regulatory protein, arsR family
      2e-05   24.1   0.3    6.1e-05   22.6   0.1    1.9  2  GntR            Bacterial regulatory proteins, gntR family
    0.00032   20.6   0.1    0.00065   19.6   0.1    1.5  1  MarR            MarR family
     0.0069   16.2   0.4       0.02   14.7   0.4    1.8  1  HTH_IclR        IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.013   15.1   0.4      0.027   14.0   0.4    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
       0.02   14.9   0.5      0.044   13.8   0.5    1.6  1  Put_DNA-bind_N  Putative DNA-binding protein N-terminus
      0.026   14.4   0.2      0.058   13.3   0.2    1.5  1  MarR_2          MarR family
      0.051   13.9   0.4       0.12   12.7   0.1    1.8  2  Rrf2            Transcriptional regulator
      0.068   13.4   0.0       0.19   12.0   0.0    1.8  1  PaaX            PaaX-like protein
      0.087   12.6   0.4       0.66    9.8   0.1    2.2  2  DUF742          Protein of unknown function (DUF742)
        0.1   12.7   0.0        0.2   11.7   0.0    1.6  1  HTH_29          Winged helix-turn helix
       0.11   12.5   0.1       0.22   11.6   0.1    1.5  1  HTH_Mga         M protein trans-acting positive regulator (MG
       0.13   12.4   1.0        0.4   10.8   0.2    2.2  2  HTH_20          Helix-turn-helix domain
       0.15   12.3   0.0        0.3   11.3   0.0    1.4  1  HTH_34          Winged helix DNA-binding domain
       0.16   12.1   2.5       0.15   12.2   0.7    1.9  2  DprA_WH         DprA winged helix domain
        0.2   11.2   0.1       0.31   10.6   0.1    1.4  1  E3_UFM1_ligase  E3 UFM1-protein ligase 1


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   0.0     1e-44   9.9e-42       4     160 .]      75     229 ..      73     229 .. 0.98

  Alignments for each domain:
  == domain 1  score: 142.6 bits;  conditional E-value: 1e-44
       DeoRC   4 eeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflgang 102
                 + K+r+++++a+ i++g+t+fldaG+T l++a +L+    ltv+T sl++a+ +s++ di++illGG++++k++ + g+++++ + ++++d+a+lg+++
  CTQ27787.1  75 QTKQRLGQQVAARIPSGSTLFLDAGSTLLAVAAQLKGP--LTVITASLDIAQLFSDRADIQLILLGGQWDSKQRLFAGSATLSLVTRYRADIAILGTCA 171
                 78*********************************996..*********************************************************** PP

       DeoRC 103 idaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitDk 160
                 ++a  gl+ s+e++a vkra+++a+++ +l+aD++K+++ ++ r+a l++i++l+ D+
  CTQ27787.1 172 LHAGLGLSASQEADADVKRAMLAASAEHWLVADHTKLNRCEPWRVAGLSDIHHLFLDR 229
                 ******************************************************9996 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.5   2.4e-20   2.3e-17       1      54 [.       6      59 ..       6      61 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 2.4e-20
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsi 54
                R++ il+ l + g ls+ elv+ l+vS  TiRRDL+ Le+qg+l + hGGa ++
  CTQ27787.1  6 RQKHILDRLSETGQLSISELVADLQVSADTIRRDLSDLEQQGVLQKSHGGAIAL 59
                9**************************************************875 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.3   8.1e-10   7.7e-07       1      44 [.       6      48 ..       6      55 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 8.1e-10
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                R+++il +L +++g++s++eL   L vS  t+rrd+ +Le +gv
  CTQ27787.1  6 RQKHILDRL-SETGQLSISELVADLQVSADTIRRDLSDLEQQGV 48
                89*******.88889**************************995 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   2.3e-08   2.2e-05       7      47 .]      10      51 ..       6      51 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.3e-08
                HHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
       HTH_5  7 ILklLae.gelcvcelaeelglsqstvShHLkkLreaGLVek 47
                IL  L+e g+l+++el+++l++s  t+++ L+ L+++G+++k
  CTQ27787.1 10 ILDRLSEtGQLSISELVADLQVSADTIRRDLSDLEQQGVLQK 51
                9999**********************************9876 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   6.4e-08   6.1e-05      17      62 ..      13      57 ..       6      59 .. 0.88
   2 ?   -2.3   0.0       3.7   3.5e+03       5      17 ..      80      92 ..      76     121 .. 0.58

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 6.4e-08
                SS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEE CS
        GntR 17 elrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGt 62
                +l+   +L s +eL+a + Vs+ t+R+ L+ Le++g+++  +g+++
  CTQ27787.1 13 RLSETGQL-SISELVADLQVSADTIRRDLSDLEQQGVLQKSHGGAI 57
                67777899.******************************9999876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.7
                HHHHHHHHHHTTS CS
        GntR  5 vyerLredIlsge 17
                + +++ ++I sg 
  CTQ27787.1 80 LGQQVAARIPSGS 92
                5555555555554 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   6.8e-07   0.00065       5      51 ..       7      53 ..       5      54 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.8e-07
                HHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE CS
        MarR  5 qfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRsk 51
                q +iL  l+e g+ls+seL   l+vs  t+ r l  Le++G +++s+
  CTQ27787.1  7 QKHILDRLSETGQLSISELVADLQVSADTIRRDLSDLEQQGVLQKSH 53
                779***************************************99986 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.4   2.1e-05      0.02       7      50 ..       9      51 ..       4      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.1e-05
                HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                +iLd l+e++q l++sel + + ++  t +R L+ L+++G +++
  CTQ27787.1  9 HILDRLSETGQ-LSISELVADLQVSADTIRRDLSDLEQQGVLQK 51
                79*********.9***************************9987 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   2.8e-05     0.027       5      47 ..       7      49 ..       4      50 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
      HTH_24  5 drkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                ++ IL  L + + +s++eL   l +S  t++r l  Le++G++
  CTQ27787.1  7 QKHILDRLSETGQLSISELVADLQVSADTIRRDLSDLEQQGVL 49
                789**************************************97 PP

>> Put_DNA-bind_N  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.5   4.7e-05     0.044      15      49 .]       9      41 ..       4      41 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.7e-05
                    HHHHHHHHTT--EE-HHHHHHHCTS-HHHHHHHHH CS
  Put_DNA-bind_N 15 ryLeelkeegveriSSteLaealgvtaaqvRKDLS 49
                    ++L++l+e g+   S +eL ++l+v+a ++R+DLS
      CTQ27787.1  9 HILDRLSETGQL--SISELVADLQVSADTIRRDLS 41
                    689999999955..556*****************8 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   6.1e-05     0.058       9      54 ..       9      52 ..       5      56 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.1e-05
                HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                ++L  L   +   l+++el++ l++s  ++ r l +L+++G ++++
  CTQ27787.1  9 HILDRLSETGQ--LSISELVADLQVSADTIRRDLSDLEQQGVLQKS 52
                56777777777..****************************99887 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00013      0.12      19      60 ..      13      54 ..       8      65 .. 0.84
   2 ?   -2.8   0.0       9.1   8.6e+03       9      34 ..     170     196 ..     168     198 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
                HSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
        Rrf2 19 keeeeepvsseeiaerqnispsylekilakLrkaglvksvrG 60
                + +e +++s++e+ +  ++s+  +++ l+ L+++g+++   G
  CTQ27787.1 13 RLSETGQLSISELVADLQVSADTIRRDLSDLEQQGVLQKSHG 54
                5566667******************************98877 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 9.1
                 HHHHHHHHH.HHSSTCC-B-HHHHHHH CS
        Rrf2   9 yalhallyL.akeeeeepvsseeiaer 34 
                 +alha l L a++e +  v+ + +a++
  CTQ27787.1 170 CALHAGLGLsASQEADADVKRAMLAAS 196
                 678887777344555555777777765 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0002      0.19      28      60 ..      24      56 ..      11      59 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0002
        PaaX 28 rllaelGiseslvRaalsRlakaGwlvrekegr 60
                +l+a+l +s+ ++R  ls l+++G l+++  g+
  CTQ27787.1 24 ELVADLQVSADTIRRDLSDLEQQGVLQKSHGGA 56
                6889************************99985 PP

>> DUF742  Protein of unknown function (DUF742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1    0.0007      0.66      46      92 ..       8      56 ..       2      83 .. 0.74
   2 ?    0.6   0.0       0.5   4.8e+02      59      73 ..     103     117 ..      93     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0007
      DUF742 46 railr.Lcre.plsVaelaAelklPvgvvrvLlsdLldaglltvrapvt 92
                ++il+ L ++ +ls+ el A+l++   ++r  lsdL ++g l+ ++  +
  CTQ27787.1  8 KHILDrLSETgQLSISELVADLQVSADTIRRDLSDLEQQGVLQKSHGGA 56
                5566415555899*****************************9887654 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.5
      DUF742  59 aelaAelklPvgvvr 73 
                   +aA+lk P++v++
  CTQ27787.1 103 LAVAAQLKGPLTVIT 117
                 5689********986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00022       0.2       7      49 ..      14      54 ..       7      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00022
      HTH_29  7 llaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrr 49
                l++ G+ ++s++++ l++s +t++r l + e+ G+  l+++++
  CTQ27787.1 14 LSETGQLSISELVADLQVSADTIRRDLSDLEQQGV--LQKSHG 54
                55566669************************995..776664 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00023      0.22       3      45 ..       3      44 ..       1      48 [. 0.94

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00023
     HTH_Mga  3 dikrklkLlelLteneksltldelakeLglseltlqsdiseLn 45
                + +r+  +l+ L e ++ l+++el   L  s  t++ d+s+L 
  CTQ27787.1  3 KLARQKHILDRLSE-TGQLSISELVADLQVSADTIRRDLSDLE 44
                5689**********.*************************985 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00042       0.4      13      54 ..       8      49 ..       6      53 .. 0.94
   2 ?   -1.5   0.0       2.8   2.6e+03      22      38 ..      97     113 ..      93     125 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00042
                HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTE CS
      HTH_20 13 rrilraLaraegltaselaerldlskntlsyHLrvLeeagLv 54
                  il+ L++ + l+ sel + l++s  t+++ L  Le+ g +
  CTQ27787.1  8 KHILDRLSETGQLSISELVADLQVSADTIRRDLSDLEQQGVL 49
                579**********************************99976 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.8
                 CTTB-HHHHHHHHTS-H CS
      HTH_20  22 aegltaselaerldlsk 38 
                 ++g t+ ++a++l ++ 
  CTQ27787.1  97 DAGSTLLAVAAQLKGPL 113
                 78999999999997654 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00031       0.3       5      72 ..      10      75 ..       8      81 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00031
      HTH_34  5 vlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreafkky 72
                +l  L+++ + + +el + l++++  +   l+ Le++g    +k++ g     +  +T++Gr+a    
  CTQ27787.1 10 ILDRLSETGQLSISELVADLQVSADTIRRDLSDLEQQGV--LQKSHGGAIALNVPAMTRQGRNALLTQ 75
                778899999*****************************5..579*******************98665 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.7   0.00016      0.15      14      61 .]       7      55 ..       4      55 .. 0.89
   2 ?   -2.5   0.0       6.2   5.8e+03       5      19 ..     180     194 ..     172     195 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00016
     DprA_WH 14 errvLaaLgpe.PvhvDqLvrrtglpaaevsaaLleLELaGlverlpGg 61
                ++ +L++L+ +  +++ +Lv++++++a+++ + L+ LE +G  +   Gg
  CTQ27787.1  7 QKHILDRLSETgQLSISELVADLQVSADTIRRDLSDLEQQGVLQKSHGG 55
                7889****986599************************99988877776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.2
     DprA_WH   5 paepplddlerrvLa 19 
                 +++++++d +r+ La
  CTQ27787.1 180 ASQEADADVKRAMLA 194
                 556666666666665 PP

>> E3_UFM1_ligase  E3 UFM1-protein ligase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00032      0.31     120     153 ..       9      42 ..       4     134 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00032
  E3_UFM1_ligase 120 eineklqeagqvsiaelakqydlpvdflkellek 153
                      i ++l+e+gq+si+el +++++++d +++ l++
      CTQ27787.1   9 HILDRLSETGQLSISELVADLQVSADTIRRDLSD 42 
                     6889***********************9987763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1813.15
//
Query:       CTQ27788.1  [L=327]
Description: putative divalent cation transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-61  207.2   0.0    3.8e-61  206.9   0.0    1.0  1  CorA      CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.9   0.0   2.1e-65   3.8e-61       4     292 .]      40     323 ..      37     323 .. 0.97

  Alignments for each domain:
  == domain 1  score: 206.9 bits;  conditional E-value: 2.1e-65
        CorA   4 fvWldlsspteeeleeLaeelgldelaledlldseerprvedyddylllvlpsveldkseeeeeevplsillgdnflitvrreplealdevikrlkdeg 102
                  +Wl+l+ ++++  ++La++  l++ + + l+ +++rprv+  +d+ l++l+ ++ +++e++++ v++++++ +++++++r++++ ald+v  +lk eg
  CTQ27788.1  40 PCWLHLNYTHSDSADWLAATPLLPNNVRDALAGESTRPRVTRIGDGALITLRCINGSTDERPDQLVAMRLYMDERLIVSTRQRKVLALDDVLGDLK-EG 137
                 69*************************999******************************************************************.99 PP

        CorA 103 gkpkspgellyrlldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkeylrdlldel 201
                 ++p++ g++l +++d+++d+  e +e+l++++ +led l  +++ + ++ la lr++l+ +rr++ap+r+v+ ++la+++ ++++d+++++++d+ ++l
  CTQ27788.1 138 NGPTDGGSWLVEVCDALTDHASEFIEQLHDRIIDLEDDL-LDQQVPPRGFLALLRKQLIVMRRYMAPQRDVY-ARLASERLPWMSDDQRRRMQDIAERL 234
                 ***************************************.5566677999**********************.77777********************* PP

        CorA 202 erllemlealrerleslqdtyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallailllfwfkr 292
                  r l++++++  r+  ++d+++++++e l r  +++++++++flP T++tG++G N +g+P++ w+   +f l++++ +++ +++ +w++r
  CTQ27788.1 235 GRGLDEIDSCIARTAIMSDEIAQIMQESLARRTYTMSLMAMVFLPSTFLTGLFGVNLGGIPGNSWHL--GFSLFCLMLVVVIGGVAWWLHR 323
                 *************************************************************999999..88888999999********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2482.02
//
Query:       CTQ27789.1  [L=457]
Description: ATP-dependent RNA helicase, specific for 23S rRNA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-44  150.7   0.0    3.5e-43  147.4   0.0    2.1  2  DEAD        DEAD/DEAH box helicase
    1.4e-28   99.5   0.0    2.1e-27   95.7   0.0    2.4  2  Helicase_C  Helicase conserved C-terminal domain
    2.2e-21   75.6   0.0    4.2e-21   74.7   0.0    1.5  1  DbpA        DbpA RNA binding domain
    1.6e-06   28.3   0.0    2.8e-06   27.4   0.0    1.4  1  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.14   12.5   0.4       0.27   11.6   0.4    1.5  1  Toxin_2     Scorpion short toxin, BmKK2


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.4   0.0   9.7e-47   3.5e-43       1     172 [.      27     190 ..      27     194 .. 0.94
   2 ?    0.9   0.0     0.094   3.4e+02      33     105 ..     229     299 ..     227     314 .. 0.78

  Alignments for each domain:
  == domain 1  score: 147.4 bits;  conditional E-value: 9.7e-47
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldngv 98 
                 t++Qa+a+p+il g+dv v+a+TGsGKT+af + +lq++     + +++ l+++PtreLa q++ +l+++     ++++l++ gg++   q++ l++ +
  CTQ27789.1  27 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHID--PARFETQSLVLCPTRELADQVAGELRRLARClPNIKILMLCGGQPFGAQRDSLQHAP 123
                 89*************************************4..577777************************7456999999*************888* PP

                 SEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  99 divvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                 +i+v+tpgrl+d+l++g+++l+ +++lV+DEadr+ld+gfsd i+++++         +++rq++++SAT+p  
  CTQ27789.1 124 HIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFA-------PADRQTLLFSATWPAA 190
                 **********************************************99999.......67899*******9965 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.094
                 HHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
        DEAD  33 ipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vdivvgtp 105
                 i++lq++++  + +   +++ + t+  ++ +++ l+  ++   l+++  +++ ++++ l ++ ng v+++v+t 
  CTQ27789.1 229 IALLQRLLS--QHQPASCVVFCNTKRDCQAVCDALNAAGQS-ALSLHGDLEQRDRDQTLVRFANGsVRVLVATD 299
                 678888887..777779999999999999999999999995.45666556666666666666777899999985 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.15   5.4e+02      15      61 ..      70     121 ..      60     130 .. 0.71
   2 !   95.7   0.0   5.8e-31   2.1e-27       2     111 .]     228     336 ..     227     336 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.15
                 TTSEEEEEESSHHHHHH....HHHHHHHT....TSTEEEESTTSTHHHHHHHHHH CS
  Helicase_C  15 eggkilifvntidrlek....vklllekk....gikvavlhgelpqnereeileq 61 
                  + ++l+ ++t++ +++    ++ l        +ik+++l g  p   ++++l+ 
  CTQ27789.1  70 FETQSLVLCPTRELADQvageLRRL---ArclpNIKILMLCGGQPFGAQRDSLQH 121
                 57899********888774443333...135578999999998888777777765 PP

  == domain 2  score: 95.7 bits;  conditional E-value: 5.8e-31
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 k++ l +ll ++++   +++f+nt+++++  ++ l +  g +++ lhg+l+q++r+++l +f +g+++vL+atdva+rG+di+++ lV+nf+l ++++ 
  CTQ27789.1 228 KIALLQRLL-SQHQPASCVVFCNTKRDCQAvCDAL-NAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGLDIKSLALVVNFELAWDPEV 324
                 788889999.999***************8766666.5669*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                  ++riGRt+Rag
  CTQ27789.1 325 HVHRIGRTARAG 336
                 **********97 PP

>> DbpA  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   1.2e-24   4.2e-21       1      71 [.     384     454 ..     384     455 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 1.2e-24
                 EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT-HHHHHHHHTT--SSS----EE CS
        DbpA   1 rlfinvGkkdklrpgdivgaiakeaglsgkdIGkIdildkfSfvevpkekaeevlkalkkkkikGrkvrve 71 
                 +l+i++Gkk k+rpgd++ga++++ g +g dIGkI++++ + +v++ +++a+++ k+l+++kikG++ rv+
  CTQ27789.1 384 TLCIDGGKKAKMRPGDVLGALTGDMGFDGADIGKITVHPAHVYVAIRQNMAQKAYKQLQNGKIKGKSCRVR 454
                 79*******************************************************************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   7.8e-10   2.8e-06      25     169 ..      41     187 ..      24     189 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 7.8e-10
                 SEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG..........GEEEESSS-B--...........-SEEEEEHH CS
      ResIII  25 krglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke......igkkvsgdkkka....kekdstnkkilvttiq 112
                 k + +++ TG+GKT    + l +++  ++ e + l+l+p+++l +q   e+++++ +  +                 ++    + + ++  +i+v+t  
  CTQ27789.1  41 KDVRVQAKTGSGKTAAFgLGLLQHIDPARFETQSLVLCPTRELADQVAGELRRLARCLPNIkilmlcG--------GQPfgaqRDSLQHAPHIIVATPG 131
                 5577899**********9******************************99988888776433333321........222233344568999******** PP

                 HHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS- CS
      ResIII 113 sldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTATp 169
                 +l  ++     ++ + + d+ + +++DEa r+ ++   +++ e+++  ++    l ++AT 
  CTQ27789.1 132 RLLDHL-----QKGTVSLDALQTLVMDEADRMLDMgfsDAIDEVIRFAPAdRQTLLFSATW 187
                 ******.....88999999999************955446666665554446778889985 PP

>> Toxin_2  Scorpion short toxin, BmKK2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   7.5e-05      0.27       1      16 [.     246     261 ..     246     266 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.5e-05
     Toxin_2   1 vkCtsskdClppCkka 16 
                 v C++++dC+ +C ++
  CTQ27789.1 246 VFCNTKRDCQAVCDAL 261
                 68***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3315.28
//
Query:       CTQ27790.1  [L=311]
Description: putative C32 tRNA thiolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-13   51.1   0.0      2e-13   50.5   0.0    1.2  1  ATP_bind_3   PP-loop family
  ------ inclusion threshold ------
       0.19   11.8   0.0       0.94    9.5   0.0    2.0  1  PAPS_reduct  Phosphoadenosine phosphosulfate reductase family


Domain annotation for each model (and alignments):
>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   2.2e-17     2e-13       2     161 ..      42     205 ..      41     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 2.2e-17
                 EEEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSSTCHHHHHHHHHHHHHHTT-EEEEEE--H......HHCTTSTCCCHHHHHHHHHHHHCHHC CS
  ATP_bind_3   2 vlvAvSgGlDSmaLllllaklkkklgiklvaihvdhglreeskeeaelvkelckklnikleiekvdv......akkkgknleeaARelRYevlkealkk 94 
                 ++v +SgG DS ++l +l +l+k+  i++ ++ v+   ++     ++++ ++ ++l+++++i + ++      +  +gk++     +lR  +l +++ +
  CTQ27790.1  42 IMVCLSGGKDSYTMLEILRNLQKSAPISFSLVAVNLDQKQPG-FPEHILPAYLEQLGVEYKIVEENTygivkeKIPEGKTTCSLCSRLRRGILYRTATE 139
                 7899******************************98877655.556788999999999999998888888865445577888889999*********** PP

                 CT.CEEE---BHHHHHHHHHHHHCCT--CCHHH-S-SEEEE..TTCCEE-CCCT--HHHHHHHHHHTT- CS
  ATP_bind_3  95 egievlllAhhadDqaEtfllrlargsglaglagikeasei..asirlvRPlLkvskeeleeylkekki 161
                  g++ ++l+hh+dD + t++l+++ g ++    g++++      +  ++RPl  ++ +++e++ + k+ 
  CTQ27790.1 140 LGATKIALGHHRDDILQTLFLNMFYGGKM---KGMPPKLMSddGKHIVIRPLAYCREKDIERFSQAKGF 205
                 *************************8886...67777655521457899**************998865 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0    0.0001      0.94       2     154 ..      42     206 ..      41     212 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0001
                  EEEE--SSCTCHHHHHHHHHHCTTH....EEEEEE-STB-HHHHHHH.HHHHHHTT-E.EEEEE-SCHHHHHHHHHH-S-THHHCHHHHHHTHHHHHH CS
  PAPS_reduct   2 lvvsvsgGkdslVllhLalkafkpv....pvvfvdtghefpetiefv.deleeryglr.lkvyepeeevaekinaekhgsslyeeaaeriaKveplkk 93 
                  ++v  sgGkds  +l+++++ +k +     +v v+  ++ p   e +  +  e++g++ ++v e+  +    i++ek+++ + +  +++  +   l +
   CTQ27790.1  42 IMVCLSGGKDSYTMLEILRNLQKSApisfSLVAVNLDQKQPGFPEHIlPAYLEQLGVEyKIVEENTYG----IVKEKIPEGKTTCSLCSRLRRGILYR 135
                  78999**************9999974454566666666655554433134455556664444444444....44444444444444444444455555 PP

                  HHHCTTECEEE----CCCTTTTTTSSSEEECTTT-S..........CEEE-CCCT--HHHHHHHHHHCT-- CS
  PAPS_reduct  94 aLekldedalltGaRrdesksraklpiveidedfek..........slrvfPllnWteedvwqyilrenip 154
                  +  +l+++ +  G  rd+  +   l+++   + +            ++ + Pl+   e+d+ ++ ++++ p
   CTQ27790.1 136 TATELGATKIALGHHRDDILQTLFLNMFYGGKMKGMppklmsddgkHIVIRPLAYCREKDIERFSQAKGFP 206
                  55556666666666666655555555554444433344555555555555566666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2245.02
//
Query:       CTQ27791.1  [L=144]
Description: stress-induced protein, ATP-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-24   86.2   0.1    3.2e-24   86.0   0.1    1.0  1  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.1   1.8e-28   3.2e-24       1     141 []       1     144 []       1     144 [] 0.95

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 1.8e-28
                 S-SEEEEEE-..SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH..HHHHHHCTTCEEEEEEEESSHHHHH CS
         Usp   1 mykrIlVavD..gseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada..akaaaeaggvkvevvveegdpaeei 95 
                 m + IlV++D  + e +++ + +   +a+ ++ae++ l+vi++ +++a+  ++ +ae    ++ ++ +e +    +++  + +   +++v eg+p+++i
  CTQ27791.1   1 MSRMILVPIDisDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLkeIAKQFSIPEDRMHFHVAEGSPKDKI 99 
                 6688******99999999********************************99999999999999998888888888888999999999*********** PP

                 HHHHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp  96 levaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 l +a+++ adl++++s++   +  +llGS++ +v+rha+c+VlvVr
  CTQ27791.1 100 LALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144
                 ******************.**************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1162.50
//
Query:       CTQ27792.1  [L=70]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-17   61.0   0.2      8e-17   60.8   0.2    1.0  1  KTSC      KTSC domain
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.013   15.5   0.0    1.1  1  CcmE      CcmE


Domain annotation for each model (and alignments):
>> KTSC  KTSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.2     9e-21     8e-17       1      58 []       7      64 ..       7      64 .. 0.99

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 9e-21
                --SSEEEEEEETTTTEEEEEETTTEEEEEES--HHHHHHHHH-S-HHHHHHHHTTTTS CS
        KTSC  1 sSsniksigYdpetqtLeieFkngsvyqYsgVpeevyeallsAeSkgsyfnrhIkgkY 58
                +Ss+i s+ Yd ++ tLei F ++   qY gVp++++ ++l+  Skg+y++ +Ikgk+
  CTQ27792.1  7 KSSRIISVAYDDASATLEIYFYHQPPLQYTGVPPRIFHDFLQVVSKGRYYDGVIKGKF 64
                59******************************************************98 PP

>> CcmE  CcmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   1.5e-06     0.013      61     112 ..      13      60 ..       9      66 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-06
                 T-EE-TTSSEEEEEEE-T.-EEEEEEES---TT--TTSEEEEEEEE-TTSEE CS
        CcmE  61 svkrdpesleveFvvtdlekelkVeYegilPdlFregqgvvveGrleedgvf 112
                 sv +d++s+++e   +++    + +Y+g+ P  F +  +vv +Gr+ + gv+
  CTQ27792.1  13 SVAYDDASATLEIYFYHQ---PPLQYTGVPPRIFHDFLQVVSKGRYYD-GVI 60 
                 788888888888888887...799*********************964.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 592.83
//
Query:       CTQ27793.1  [L=26]
Description: hypothetical protein CH1034_190276 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (26 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        86  (0.0047967); expected 358.6 (0.02)
Passed bias filter:                       79  (0.00440627); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 236.60
//
Query:       CTQ27794.1  [L=374]
Description: outer membrane pore protein N, non-specific [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.7e-150  499.2  31.3   7.6e-150  499.0  31.3    1.0  1  Porin_1   Gram-negative porin


Domain annotation for each model (and alignments):
>> Porin_1  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  499.0  31.3  4.2e-154  7.6e-150       1     340 []      27     374 .]      27     374 .] 0.97

  Alignments for each domain:
  == domain 1  score: 499.0 bits;  conditional E-value: 4.2e-154
                 CTTEEEEEEEEEEEEEEEESTTSTCEEEEEEEEEEEEEEESSSSEEEEEEEEEEEESSSBTTCTTTCEEEEEEEEEEETTTEEEEEEEEE-TTHHHHCT CS
     Porin_1   1 KdgnkldlygkvtklhyfsdeksedgddtyariGfKGetqindqLtgygqwEyevkvngtegesaqsktrlaFaGLkfgevGsldyGrnygvvydveaw 99 
                 Kdgnkldlygkv++lhyfs+++++dgd+ty r+GfKGetqind+LtgygqwEy+v++n+te++s+q++trlaFaG+k g++Gs+dyGrnygv+ydve w
  CTQ27794.1  27 KDGNKLDLYGKVDGLHYFSSDSKKDGDQTYLRFGFKGETQINDMLTGYGQWEYNVQANNTETSSDQAWTRLAFAGIKVGDYGSFDYGRNYGVLYDVEGW 125
                 9************************************************************************************************** PP

                 TTTSSSSSSCTSSCTTSTTTSEECCEEEEEESCCCCTSTTEEEEEEEE--B-TS...............SSTTT-BESEEEEEEEEEETT..EEEEEEE CS
     Porin_1 100 tdvlpefggdtvaqtdnfmtkrangvatYrntdFfGlvdglnfalqyqgknedts...........tnnrnlkksngdgygvslsYeveGfalsvagay 187
                 td+lpefggd+++++dnfm +rangvatYrn+dFfGlv+glnfalqyqgkne ++           +++ +++ +ngdg+g+s+sY+++ +++s a+ay
  CTQ27794.1 126 TDMLPEFGGDSYTYADNFMAGRANGVATYRNSDFFGLVEGLNFALQYQGKNEGQNaqdinvgtnnrSSDSDVRFDNGDGFGLSTSYDFG-MGISAAAAY 223
                 ****************************************************9888999999655434456779**************9.9******** PP

                 EEEEE-CHHC......TSSCSSTSEEEEEEEEEEEEETTEEEEEEEEEECSESEEEEEEEESEEEEEEEEEEE-BTTSEEEEEEEEEEEEECETT..ST CS
     Porin_1 188 arsdrtakqklelkseakllgngkkaevwalglkYdanniylaaaYaetrnatlvgasgianktqnlevvaqyqfdfGlrPsiaYvqskgkdleg..kk 284
                 ++sdrt++q       ++++++g+kae+w++glkYdan+iyla++Y+etrn+t++g+ g+anktqn+ev+aqyqfdfGlrP+i+Y+qskgkdl +  ++
  CTQ27794.1 224 TSSDRTNDQM------TQTNARGDKAEAWTAGLKYDANDIYLATMYSETRNMTPYGNDGVANKTQNFEVTAQYQFDFGLRPAISYLQSKGKDLYNngRY 316
                 ********98......577899**********************************************************************976669* PP

                 CCEEEEEEEEEEEEEECCSSEEEEEEEEEE-S-TTSSC..CTSSTSC-EEEEEEEEEE CS
     Porin_1 285 gdndlvkyvdvGatYyFnKnmsayVdykinlldkdddk..elgistddivavglvyqF 340
                  d+dlvky+dvGatYyFn+nms+yVdykinlld +d++  ++gistd+iva+glvyqF
  CTQ27794.1 317 ADKDLVKYMDVGATYYFNRNMSTYVDYKINLLDGNDKFyeDNGISTDNIVALGLVYQF 374
                 ************************************99999****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2816.21
//
Query:       CTQ27795.1  [L=39]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      159  (0.00886831); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 313.64
//
Query:       CTQ27796.1  [L=1175]
Description: putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-82  276.3   0.7    3.7e-82  275.5   0.7    1.4  1  POR_N            Pyruvate flavodoxin/ferredoxin oxidoreductas
    7.8e-34  117.3   0.0    1.4e-33  116.5   0.0    1.4  1  POR              Pyruvate ferredoxin/flavodoxin oxidoreductas
    4.1e-23   80.9   0.0      8e-23   80.0   0.0    1.5  1  EKR              Domain of unknown function
    5.8e-16   58.7   0.0    1.8e-15   57.1   0.0    1.9  1  PFOR_II          Pyruvate:ferredoxin oxidoreductase core doma
    3.1e-10   40.8   8.0    7.9e-10   39.5   8.0    1.8  1  Fer4_16          4Fe-4S double cluster binding domain
    3.8e-10   40.2   8.9    1.2e-09   38.6   8.9    1.9  1  Fer4_7           4Fe-4S dicluster domain
    8.1e-10   38.7   0.1    2.2e-09   37.3   0.1    1.8  1  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
    6.7e-08   32.0  20.8    9.4e-05   22.1   3.9    3.3  3  Fer4             4Fe-4S binding domain
    1.6e-07   31.4  12.1    1.6e-07   31.4  12.1    2.6  1  Fer4_21          4Fe-4S dicluster domain
    1.7e-07   31.0  19.4    1.8e-05   24.6   2.6    3.1  3  Fer4_6           4Fe-4S binding domain
    2.2e-07   30.9  21.1    9.6e-07   28.9  10.5    2.5  3  Fer4_9           4Fe-4S dicluster domain
    6.4e-07   29.4  12.9    8.7e-06   25.8  12.8    2.5  2  Fer4_10          4Fe-4S dicluster domain
    7.8e-06   26.3   8.7    1.9e-05   25.1   7.7    2.3  1  Fer4_17          4Fe-4S dicluster domain
    2.6e-05   24.1  18.0      0.005   16.9   3.6    3.3  3  Fer4_2           4Fe-4S binding domain
    0.00024   21.2   4.1      0.049   13.8   0.2    2.5  2  Fer4_18          4Fe-4S dicluster domain
    0.00043   20.7  10.8    0.00043   20.7  10.8    2.0  1  Fer4_8           4Fe-4S dicluster domain
    0.00054   19.8   0.5     0.0031   17.4   0.0    2.4  3  Transketolase_C  Transketolase, C-terminal domain
  ------ inclusion threshold ------
      0.015   15.6   0.1      0.076   13.4   0.1    2.3  1  FlgM             Anti-sigma-28 factor, FlgM
      0.025   15.5   4.8      0.025   15.5   4.8    3.1  2  Fer4_3           4Fe-4S binding domain
      0.052   14.3   3.6        1.6    9.5   0.3    2.9  2  Fer4_15          4Fe-4S single cluster domain
       0.19   12.3  11.7       0.23   12.0   0.7    2.7  2  Fer4_13          4Fe-4S single cluster domain of Ferredoxin I
       0.25   12.0  17.8       0.57   10.8   1.3    3.0  3  Fer4_4           4Fe-4S binding domain
       0.74   10.7   6.4        3.4    8.6   0.1    2.9  2  Fer4_22          4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> POR_N  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.5   0.7   4.8e-85   3.7e-82       2     230 ..      13     243 ..      12     244 .. 0.98

  Alignments for each domain:
  == domain 1  score: 275.5 bits;  conditional E-value: 4.8e-85
                 HHHHCTEEEEEE--BTTTCCHHHHHCHCCCCCTT....EE.EEEE-SSHHHHHHHHHHHHCTT-EEEEEEECCHHHHCCCCHHHHHHTT--EEEEEEEE CS
       POR_N   2 aaiaagvdviaaYPITPsseiaeelaellakgev....gdvevvqmesEigaisaviGAaaaGaraaTaTSgqGllLmienlglaageelPvvivvvaR 96 
                 +a++++ +via+YPITPss++ae++++++ +g +    ++++vv+m+sE+gai+av+GA+++Ga+++ +TS+qGllLmi++l++ ag+ +P+v++v+aR
  CTQ27796.1  13 VAFRTS-EVIAIYPITPSSTMAEQADAWAGNGLKnvwgDVPRVVEMQSEAGAIGAVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGQLMPFVLHVAAR 110
                 577788.9*************************999*9999********************************************************** PP

                 E-STTBEEEEE--TTCHHHHS---EEEE-SSHHHHHHHHHHHHHHHHHCTSEEEEEEEHHHH.HEEEEEEC-SGG.GS-----SBXXXXXXXXSXXXBX CS
       POR_N  97 alpstglsirtdqsDlmaardtglivlasenvqeafdlalvAfnlAekvrvPvivlfDgfllshevekvelpdeedelklikekleeyerkeyaldpek 195
                 ++++++lsi++d+sD+ma+r+tg+++l++++vqea d+al+ + ++++ rvP+i++fDgf++she++k+  ++++++++l  +++ +++r++ al+pe+
  CTQ27796.1 111 TVATHALSIFGDHSDVMAVRQTGCAMLCASSVQEAQDFALISHIATLQSRVPFIHFFDGFRTSHEINKIAPLADDTIRALLPQDKIAEHRQR-ALNPEH 208
                 ******************************************************************************************99.****** PP

                 XTXXTSSXXEEESBXBXTTSXBXXXXHHHHHHHHH CS
       POR_N 196 piargtaanpdtglehrekgneaedaaekvveeve 230
                 p++rgt anpdt+++ re++n+++da+  +ve+++
  CTQ27796.1 209 PVIRGTSANPDTYFQSREATNPWYDAVYDHVEKAM 243
                 *******************************9987 PP

>> POR  Pyruvate ferredoxin/flavodoxin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   0.0   1.7e-36   1.4e-33       1     177 []     426     610 ..     426     610 .. 0.92

  Alignments for each domain:
  == domain 1  score: 116.5 bits;  conditional E-value: 1.7e-36
                 CTSTHHHHHHHHHHHH.HHTT-EEEEEEEEESSSSSSCEEEEEEEESS.-SSS--TTSEEEEEESSHHHHH..HHGGGEEEEEEEEEECTCGTT-CCHH CS
         POR   1 GGqGvvtagkilakaa.araGyyvqanreygseirGghsyshvrisdepivpsievgeadllvaldaetls..ehldglkpggiiiynseelkpdelkk 96 
                 G +G+v+a+k+ +k++  ++ +  q++++y+s++ Gg ++sh+r+s++pi++s+ + +ad++ +++ + ++  +++++lkpggi+++n++  + de++ 
  CTQ27796.1 426 GSDGSVSATKNNIKIIgNSTPWFSQGYFVYDSKKAGGLTVSHLRVSEKPIRSSYLISQADFVGCHQLQFIDkyQMAERLKPGGIFLLNTP-YSADEVWS 523
                 88**************99999*************************************************889****************6.57777777 PP

                 HCTS-HHHHHHH.T-EEEEE-HHHHHHHCCC.CCHHHHHHHHHHHHHHT.S-HHHHHHHHHCCS-CH......HHHHHHHHHHHHHHH CS
         POR  97 akeeerelkerl.gvrvygvdatkiakeiggneraaNtvmlGalaallg.lplealeeaikkrfpkkk.....eviekNlkafragye 177
                 ++++e ++  ++ ++r+y+v+a kia+e++  +  +Ntvm+ a+++l++ lp ++ ++ ++++++k +     e++e+N++a+ +++e
  CTQ27796.1 524 RLPQEVQATLNQkKARFYVVNAAKIARECSL-GARINTVMQMAFFHLTQiLPGDSALAELQAAIAKSYsskgqELVERNWQALALARE 610
                 7888888887778******************.*****************99998877777777776656777************9986 PP

>> EKR  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0     1e-25     8e-23       3      57 .]     626     678 ..     624     678 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 1e-25
                 -----..----HHHHHTHHHHHTT-GGGS-GGGS-..TT-EE-SS-GGGT----- CS
         EKR   3 ekkpkvpedapefVkevlapinaqeGDeLpVSafpgmeDGtfptGTsaYEKRgiA 57 
                 +++p+v++ ap+fVk+v+a ++a+ GD LpVSa+p   DGt+p GT+++EKR+iA
  CTQ27796.1 626 NRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALP--PDGTWPMGTTRWEKRNIA 678
                 57999******************************..*****************9 PP

>> PFOR_II  Pyruvate:ferredoxin oxidoreductase core domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   2.3e-18   1.8e-15       1      81 [.     265     347 ..     265     365 .. 0.87

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 2.3e-18
                 -SEEEEE-STHHHHHHHHHHHHHHTT--EEEEEES--BS--HHHHHH.HSTT-SEEEEEE-S--TT-G.-HHHHHHHHHTGGG CS
     PFOR_II   1 AevvivamGsvagtaksavdelReegikvGllrlrtlrPFPeeelke.llkkvkkvvvldrnisfgse.Gqlveevkaalkks 81 
                 Ae viv+mGs++gt++++vdel  +g+kvG+l++r++rPF +++l   l +++++v+vldr  + g+   +l+ +v +al + 
  CTQ27796.1 265 AERVIVIMGSAIGTCEEVVDELLSRGEKVGVLKVRLYRPFSAAHLLAaLPESARAVAVLDRTKEPGALaEPLYLDVMTALAEA 347
                 899**************************************998765156899*************9999********99876 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   8.0     1e-12   7.9e-10       2      66 ..     689     757 ..     688     758 .. 0.73

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1e-12
     Fer4_16   2 CgtCgkCaevCPtnaikek...kekeiearecisyntaekkdlaedeekck.kqeaitgCdiCqdvCPa 66 
                 C++C+ C+ +CP++ai++k    e++ +a+++  + + + +d++ ++   +   e++tgC+ C++vCPa
  CTQ27796.1 689 CTQCNHCVAACPHSAIRAKvvaPEEMENAPASLHSLDVKSRDMRGQKYVLQvAPEDCTGCNLCVEVCPA 757
                 *****************9944333334444455556777777776666655244999***********8 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   8.9   1.5e-12   1.2e-09       2      50 ..     689     757 ..     688     758 .. 0.71

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 1.5e-12
      Fer4_7   2 CigCgaCvaaCpvkaieldeeenek...................gtekv..eidpekClgCgaCvavCPt 50 
                 C++C+ CvaaCp++ai+ + ++ e+                   g +k+  ++ pe+C+gC+ Cv+vCP+
  CTQ27796.1 689 CTQCNHCVAACPHSAIRAKVVAPEEmenapaslhsldvksrdmrG-QKYvlQVAPEDCTGCNLCVEVCPA 757
                 *****************9854333333344555555555555542.33334888***************7 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   2.9e-12   2.2e-09      34     152 ..     936    1066 ..     918    1067 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 2.9e-12
                    HHHHHHHHH......HSTTSEEEEEEEHHHHHHT.GGGHHHHHHTT-SEEEEEEE-SBCCCHHHH...HHHHTCCTTTTSBB.BS----HHHHHH CS
  TPP_enzyme_C   34 lpaAiGakl......akpdrevvaivGDGgflmi.lqelatavrrnlpitvvvlnNegygmtggq...qepfggkrksgpagkdlkpvdfaklae 118 
                    l++  Ga+       a  ++ v+ i GDG  ++i +  l ++     +++++vl+ ++y +tggq    +p g+ +k+g++gk +  +d+   + 
    CTQ27796.1  936 LAGVAGAEElltdadALVEKSVWLIGGDGWAYDIgFGGLDHVLSLTENVNILVLDTQCYSNTGGQaskATPLGAVTKFGEHGKRKARKDLGVSMM 1030
                    566666665444422223689***********************************************9**************99999******* PP

                    HTTSE.EEEESSH..HHHHHHHHHHHHCSSSEEEEE CS
  TPP_enzyme_C  119 alGak.garveka.dveeleealkealekkgpalie 152 
                     +G   +a+++   +++++ +a++ea +  gp+li 
    CTQ27796.1 1031 MYGHVyVAQISLGaQLNQTVKAIQEAEAYPGPSLII 1066
                    ***999995554314777788999999*******96 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   1.5   2.7e-07   0.00021       2      24 .]     683     705 ..     682     705 .. 0.91
   2 !   22.1   3.9   1.2e-07   9.4e-05       3      20 ..     740     757 ..     738     758 .. 0.89
   3 ?   -1.2   1.1       2.8   2.2e+03       7      12 ..     818     823 ..     816     824 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.7e-07
                 EEETTTSSS-THHHHHSTTTEEE CS
        Fer4   2 videekCigCGaCvevCPvgAIt 24 
                 ++ e +C+ C+ Cv +CP+ AI+
  CTQ27796.1 683 IWKEALCTQCNHCVAACPHSAIR 705
                 67899****************96 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 1.2e-07
                 EETTTSSS-THHHHHSTT CS
        Fer4   3 ideekCigCGaCvevCPv 20 
                 + +e+C+gC++CvevCP 
  CTQ27796.1 740 VAPEDCTGCNLCVEVCPA 757
                 669**************6 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.8
                 TSSS-T CS
        Fer4   7 kCigCG 12 
                  C gCG
  CTQ27796.1 818 ACSGCG 823
                 7****9 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4  12.1     2e-10   1.6e-07       4      55 ..     685     759 ..     682     761 .. 0.73

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 2e-10
     Fer4_21   4 dedkCigCgkCliaCedtshqaieidaktvl.......................kvvedeCvGCnlCssvCPved 55 
                 +e+ C +C++C+ aC+ +++ a  ++++++                        +v  ++C+GCnlC++vCP +d
  CTQ27796.1 685 KEALCTQCNHCVAACPHSAIRAKVVAPEEMEnapaslhsldvksrdmrgqkyvlQVAPEDCTGCNLCVEVCPAKD 759
                 6789************88888774444443334444445555555555665556999***************865 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   2.6   2.3e-08   1.8e-05       2      24 .]     682     704 ..     681     704 .. 0.93
   2 !   17.3   2.3   4.6e-06    0.0036       4      21 ..     740     757 ..     737     767 .. 0.88
   3 ?   -2.2   0.6       6.7   5.2e+03       8      14 ..     818     824 ..     817     824 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.3e-08
      Fer4_6   2 veidpdkCigCgdCvrvCPegai 24 
                 + +++ +C++C+ Cv++CP+ ai
  CTQ27796.1 682 PIWKEALCTQCNHCVAACPHSAI 704
                 7799****************998 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 4.6e-06
      Fer4_6   4 idpdkCigCgdCvrvCPe 21 
                 + p+ C+gC+ Cv vCP+
  CTQ27796.1 740 VAPEDCTGCNLCVEVCPA 757
                 56889************8 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 6.7
      Fer4_6   8 kCigCgd 14 
                 +C gCg+
  CTQ27796.1 818 ACSGCGE 824
                 7****96 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   2.9   5.5e-06    0.0043      18      51 .]     671     704 ..     666     704 .. 0.74
   2 !   28.9  10.5   1.2e-09   9.6e-07       2      48 ..     689     757 ..     688     760 .. 0.84
   3 !   13.3   4.5     9e-05      0.07       1      40 [.     744     823 ..     744     824 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.5e-06
      Fer4_9  18 vedaaerkarlraaseeaCigCgaCveaCpkgai 51 
                 + ++ +   ++ +++e  C++C+ Cv+aCp+ ai
  CTQ27796.1 671 RWEKRNIAEEIPIWKEALCTQCNHCVAACPHSAI 704
                 555555556666677799************9987 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 1.2e-09
      Fer4_9   2 CtgCgaCveaCpagvvvedaaerk.arlraase.....................eaCigCgaCveaCpk 48 
                 Ct+C+ Cv+aCp+ +++ + ++ + +++  as                      e+C+gC+ Cve+Cp 
  CTQ27796.1 689 CTQCNHCVAACPHSAIRAKVVAPEeMENAPASLhsldvksrdmrgqkyvlqvapEDCTGCNLCVEVCPA 757
                 ***********9999977766555055544444999999999999999********************7 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 9e-05
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase........................................eaCigCg 40 
                 +CtgC+ Cve+Cpa+  ++ + + ++ + + +                                          aC gCg
  CTQ27796.1 744 DCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHveeekvnyeyflnlpeidrskleridirtsqlisplfeysGACSGCG 823
                 5************9999999888888877666577777777777777777777777777777777777777777777776 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8  12.8   1.1e-08   8.7e-06       6      56 .]     686     756 ..     681     756 .. 0.94
   2 !   17.8   3.0   3.4e-06    0.0026       6      34 ..     742     767 ..     738     775 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.1e-08
     Fer4_10   6 ddtCirCgkCvkaCPadl....................tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 +  C++C+ Cv+aCP ++                      v+ ++ + ++ + ++++e+Ctgc  Cve+CP
  CTQ27796.1 686 EALCTQCNHCVAACPHSAirakvvapeemenapaslhsLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCP 756
                 568*************99******************98889999999999999*****************9 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 3.4e-06
     Fer4_10   6 ddtCirCgkCvkaCPadltsvgakgease 34 
                 ++ C++C+ Cv++CPa   ++++++e++ 
  CTQ27796.1 742 PEDCTGCNLCVEVCPA---KDRQNPEIKA 767
                 789*************...5555555544 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   7.7   2.5e-08   1.9e-05       2      58 ..     689     757 ..     688     759 .. 0.61

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2.5e-08
     Fer4_17   2 CiqCgyClpeCpsyea.........ydnepkkllraakl........glleeaeke...e.kaslCieCgeCerkCPq 58 
                 C+qC +C+++Cp  ++         ++n p+       +         +++++  +   + + ++C++C++C+++CP+
  CTQ27796.1 689 CTQCNHCVAACPHSAIrakvvapeeMENAPA-------SlhsldvksRDMRGQ--KyvlQvAPEDCTGCNLCVEVCPA 757
                 ************9777333333322333333.......233333322344443..24564366**************7 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   2.9   4.3e-05     0.034       4      22 .]     683     701 ..     680     701 .. 0.84
   2 !   16.9   3.6   6.4e-06     0.005       4      22 .]     739     757 ..     736     757 .. 0.84
   3 ?   -0.4   0.1         2   1.5e+03       8      14 ..     817     823 ..     811     825 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.3e-05
      Fer4_2   4 vvdtdrCigCgaCvsaCPa 22 
                    ++ C++C+ Cv aCP+
  CTQ27796.1 683 IWKEALCTQCNHCVAACPH 701
                 556778************7 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 6.4e-06
      Fer4_2   4 vvdtdrCigCgaCvsaCPa 22 
                 +v ++ C+gC+ Cv +CPa
  CTQ27796.1 739 QVAPEDCTGCNLCVEVCPA 757
                 555788************8 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2
      Fer4_2   8 drCigCg 14 
                  +C gCg
  CTQ27796.1 817 GACSGCG 823
                 48****8 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.5    0.0039       3.1      57      74 ..     685     702 ..     669     709 .. 0.79
   2 !   13.8   0.2   6.3e-05     0.049      49      74 ..     733     758 ..     718     775 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0039
     Fer4_18  57 gagdcidcescvkvcPtg 74 
                 +++ c++c++cv+ cP  
  CTQ27796.1 685 KEALCTQCNHCVAACPHS 702
                 5678************64 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 6.3e-05
     Fer4_18  49 ekeerkekgagdcidcescvkvcPtg 74 
                  ++   + +  dc+ c+ cv+vcP +
  CTQ27796.1 733 GQKYVLQVAPEDCTGCNLCVEVCPAK 758
                 44555567789*************75 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7  10.8   5.5e-07   0.00043       5      64 ..     689     758 ..     686     759 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 5.5e-07
      Fer4_8   5 CieCgaCqsaCpvlrrtkkhlldargeaae......dvqeeqvlee....eealwsCttcgaCtevCpvg 64 
                 C++C  C +aCp    ++k     + e+a       dv +++++ +    + a + Ct+c+ C+evCp +
  CTQ27796.1 689 CTQCNHCVAACPHSAIRAKVVAPEEMENAPaslhslDVKSRDMRGQkyvlQVAPEDCTGCNLCVEVCPAK 758
                 ***********9544444433333333332334444233333322356667799**************75 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     4e-06    0.0031      13      77 ..     268     332 ..     262     354 .. 0.90
   2 ?   -1.7   0.0       3.2   2.5e+03      57      91 ..     533     568 ..     525     572 .. 0.71
   3 ?   -3.0   0.0       8.4   6.5e+03      15      33 ..    1040    1058 ..    1037    1061 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4e-06
                      EEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHH CS
  Transketolase_C  13 tlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGig 77 
                      ++v +Gs   ++ e+++eL ++g ++ V+ +r  +p+  + +l+++ +  r v v + +k+ G  
       CTQ27796.1 268 VIVIMGSAIGTCEEVVDELLSRGEKVGVLKVRLYRPFSAAHLLAALPESARAVAVLDRTKEPGAL 332
                      7899******************************************************9998865 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.2
                      HHHHHSEEEEEEEE..ESTTSHHHHHHHHHHHCCCTT CS
  Transketolase_C  57 svkktgrlvvveea..vkrgGigsevaaalaeeafdg 91 
                      + +k+ r+ vv+ a  ++++++g+ ++++++  af++
       CTQ27796.1 533 LNQKKARFYVVNAAkiARECSLGARINTVMQM-AFFH 568
                      55777788888777335789999999998887.4444 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 8.4
                       EEETTHHHHHHHHHHHHHT CS
  Transketolase_C   15 vayGsmveealeAaeeLek 33  
                       ++ G+++++ ++A++e+e+
       CTQ27796.1 1040 ISLGAQLNQTVKAIQEAEA 1058
                       7899999999999999876 PP

>> FlgM  Anti-sigma-28 factor, FlgM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   9.8e-05     0.076       5      38 ..     901     937 ..     900     938 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.8e-05
        FlgM   5 iSeaakal.qkakqaa..aaapevreekVaelKeaIa 38 
                 +Se a +l +++ +a+  +a+pevr e Va+l++a+a
  CTQ27796.1 901 LSEFADKLpAELNAALhaEATPEVRREQVAALRQALA 937
                 5777777743444443658889*************87 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   7.6    0.0042       3.3       1      15 []     689     703 ..     689     703 .. 0.92
   2 ?   15.5   4.8   3.1e-05     0.025       1      12 [.     745     756 ..     745     759 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0042
      Fer4_3   1 CtgCgaCvevCPvgA 15 
                 Ct+C+ Cv +CP  A
  CTQ27796.1 689 CTQCNHCVAACPHSA 703
                 ************865 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 3.1e-05
      Fer4_3   1 CtgCgaCvevCP 12 
                 CtgC++CvevCP
  CTQ27796.1 745 CTGCNLCVEVCP 756
                 ************ PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.3     0.077        60       7      19 ..     688     700 ..     686     730 .. 0.86
   2 ?    9.5   0.3    0.0021       1.6       6      20 ..     743     757 ..     739     783 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.077
     Fer4_15   7 aCigcglCvaeap 19 
                 +C+ c+ Cva++p
  CTQ27796.1 688 LCTQCNHCVAACP 700
                 7**********97 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0021
     Fer4_15   6 daCigcglCvaeape 20 
                 + C+gc+lCv+++p 
  CTQ27796.1 743 EDCTGCNLCVEVCPA 757
                 68***********84 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   4.4       0.1        78       5      18 ..     688     701 ..     686     702 .. 0.90
   2 ?   12.0   0.7   0.00029      0.23       4      32 ..     743     771 ..     740     784 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.1
     Fer4_13   5 tCiacgaCvelaPd 18 
                  C+ c+ Cv+++P+
  CTQ27796.1 688 LCTQCNHCVAACPH 701
                 5************6 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00029
     Fer4_13   4 dtCiacgaCvelaPdvFeeddeggasvva 32 
                 + C++c++Cve++P   + ++e +a  ++
  CTQ27796.1 743 EDCTGCNLCVEVCPAKDRQNPEIKAINMM 771
                 78************988888777666655 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.3   0.00073      0.57       4      15 ..     689     700 ..     685     714 .. 0.91
   2 ?   10.6   3.2   0.00087      0.68       2      16 ..     743     757 ..     742     762 .. 0.89
   3 ?   -1.8   0.4         8   6.2e+03       3       8 ..     818     823 ..     816     824 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00073
      Fer4_4   4 CigCgsCvaaCP 15 
                 C++C  CvaaCP
  CTQ27796.1 689 CTQCNHCVAACP 700
                 ***********9 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00087
      Fer4_4   2 erCigCgsCvaaCPq 16 
                 e C+gC  Cv +CP 
  CTQ27796.1 743 EDCTGCNLCVEVCPA 757
                 78************5 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 8
      Fer4_4   3 rCigCg 8  
                  C gCg
  CTQ27796.1 818 ACSGCG 823
                 6****8 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.4     0.078        61      79      94 ..     686     701 ..     670     706 .. 0.74
   2 ?    8.6   0.1    0.0043       3.4      72      94 ..     735     757 ..     712     759 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.078
     Fer4_22  79 esgCvGCgRCieacpv 94 
                 e  C+ C+ C++acp+
  CTQ27796.1 686 EALCTQCNHCVAACPH 701
                 5667777777777775 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0043
     Fer4_22  72 efkekfgesgCvGCgRCieacpv 94 
                 +++ ++  + C+GC+ C+e+cp+
  CTQ27796.1 735 KYVLQVAPEDCTGCNLCVEVCPA 757
                 4556677889***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 7763.41
//
Query:       CTQ27797.1  [L=89]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 690.34
//
Query:       CTQ27798.1  [L=87]
Description: hypothetical protein CH1034_190281 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-14   53.0   0.7    3.8e-14   52.6   0.7    1.2  1  DUF333    Domain of unknown function (DUF333)
  ------ inclusion threshold ------
       0.13   12.2   0.1       0.13   12.2   0.1    1.2  1  InvH      InvH outer membrane lipoprotein


Domain annotation for each model (and alignments):
>> DUF333  Domain of unknown function (DUF333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.7   4.3e-18   3.8e-14       2      45 ..      38      81 ..      37      84 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 4.3e-18
      DUF333  2 maNPAsvyCvkqGGkleiakdadGgqvgyCqlpdGkrceEwaLy 45
                m++   ++C+++GG l++a+++dG+ +g+C lp+Gkrc+E+aL 
  CTQ27798.1 38 MSDAGQANCAMIGGSLSVARQLDGSAIGMCALPNGKRCSEQALA 81
                6777789***********************************97 PP

>> InvH  InvH outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.4e-05      0.13      12      36 ..       5      29 ..       1      71 [. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
        InvH 12 lligcaqvplpssvskpvqqpgaqk 36
                +l+gca + l +  s pvqq  a +
  CTQ27798.1  5 MLVGCAALLLSACSSEPVQQATAAH 29
                89******************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 667.61
//
Query:       CTQ27799.1  [L=146]
Description: heat-inducible protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-20   71.0   0.3    8.5e-20   70.7   0.3    1.1  1  META      META domain
  ------ inclusion threshold ------
      0.053   13.3   0.1      0.072   12.9   0.1    1.2  1  DUF2857   Protein of unknown function (DUF2857)


Domain annotation for each model (and alignments):
>> META  META domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.3   9.5e-24   8.5e-20       2     105 ..      28     138 ..      27     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 9.5e-24
                 TTTTTEEEEEEEECSSCS-BTT---.EEEECCC......EEEEE-SSSEEEEEEEECTTEEEESSEEE-----.SCHHHHCHHHHHHCCCH-CEEEE-S CS
        META   2 aplagteWeltsvdgkavaasapat.ltfaedg......rvsgsagCNrfsGsytleggrltlgalasTrmaC.spalmelEqallkaLqavtsyrieg 92 
                 ++l++++++ltsv+g+av+as+++  l f e+        vsg ++CN fsG+ ++++g+l++++la+Trm+C +++l++l+ ++ k+L++ +++++++
  CTQ27799.1  28 EQLQHHRFVLTSVNGQAVNASDRPLeLSFGEKMaitgkmYVSG-NMCNGFSGEGKVSDGELKVKSLAMTRMLChDAQLNTLDATIDKMLREGAQVDLTE 125
                 689*****************99887788855553322214566.79***************************999*********************** PP

                 SEEEEE-TTS.-E CS
        META  93 drLtLtdadgeel 105
                 ++LtL +ad++ +
  CTQ27799.1 126 NQLTLATADQTLV 138
                 ********99544 PP

>> DUF2857  Protein of unknown function (DUF2857)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     8e-06     0.072      53      99 ..      86     132 ..      78     144 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8e-06
     DUF2857  53 kvsvdhealrrlLkqareeeereelidralrlGAsiellaklFglts 99 
                 +++v++ a++r+L + ++ ++  ++id++lr GA+ +l ++   l +
  CTQ27799.1  86 ELKVKSLAMTRMLCHDAQLNTLDATIDKMLREGAQVDLTENQLTLAT 132
                 5789999*******************************987655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1195.77
//
Query:       CTQ27800.1  [L=329]
Description: fermentative D-lactate dehydrogenase, NAD-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-53  181.3   0.0    1.6e-53  180.7   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    3.8e-35  120.5   0.0    4.4e-35  120.3   0.0    1.0  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    0.00026   21.1   0.0    0.00054   20.1   0.0    1.5  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
    0.00026   21.2   0.0    0.00094   19.4   0.0    1.9  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
     0.0015   19.1   0.1       0.01   16.3   0.0    2.3  3  XdhC_C         XdhC Rossmann domain
  ------ inclusion threshold ------
      0.022   15.3   0.0      0.071   13.6   0.0    1.8  1  CoA_binding_2  CoA binding domain
       0.14   11.8   0.0       0.33   10.5   0.0    1.6  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.7   0.0   6.1e-57   1.6e-53       1     178 []     110     297 ..     110     297 .. 0.94

  Alignments for each domain:
  == domain 1  score: 180.7 bits;  conditional E-value: 6.1e-57
                   HHHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivsl 97 
                   ++++++l+rr+++a++++r+ ++ s + l+g +++gkt G+iG+G+IG a+ ++lk+fgm+++a+d+++++   + elgve+v+l +l++esD++sl
    CTQ27800.1 110 IGMMMSLNRRIHRAYQRTRDANF-SLEGLTGFTMYGKTAGVIGTGKIGVAMLRILKGFGMRLLAFDPYPSAA--ALELGVEYVDLATLYKESDVISL 203
                   689********************.99******************************************9854..6889******************* PP

                   -S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSS..........SSGTC...HHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  98 hlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeee..........plped...spllelpnviltPHia 178
                   h+plt+e++hl+n+e++++mk+g+++iNt+RG+l+d +a ++aLk +ki++ +lDv+e+e          ++ +d    +l  ++nv++t H a
    CTQ27800.1 204 HCPLTDENYHLLNREAFDQMKDGVMVINTSRGALIDSQAAIDALKHQKIGALGLDVYENErdlffedksnDVIQDdvfRRLSACHNVLFTGHQA 297
                   **************************************************************999988874444434458899*********87 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0   1.7e-38   4.4e-35       2     133 ..       4     328 ..       3     329 .] 0.98

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 1.7e-38
                 EEEST.CHHHHHHHHH...TTE.EEEEESCSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHH..TT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTT CS
                 xxxxxxxxxxxxxxxx...xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   2 lileplreeelellke...egv.evevkdellteellekakdadalivrsntkvtaevleal..pkLkviaragvGvDnvDldaakerGilVtnvpgys 94 
                 +++++ +++++++l++   ++  e+e+ d llt+++++ a++++a+++++n++ ++ vle+l   ++k+ia++++G++nvDl+aake+G+ V++vp+ys
  CTQ27800.1   4 AVYST-KQYDKKYLQHvndAYGfELEFFDFLLTAKTAKTANGCEAVCIFVNDDGSRPVLEELkaHGVKYIALRCAGFNNVDLEAAKELGLRVVRVPAYS 101
                 67766.99999999999984445**************************************999*********************************** PP

                 HHHHHHHH........................................................................................... CS
                 xxxxxxxx........................................................................................... RF
  2-Hacid_dh  95 tesvAElt........................................................................................... 102
                 +e+vAE++                                                                                           
  CTQ27800.1 102 PEAVAEHAigmmmslnrrihrayqrtrdanfslegltgftmygktagvigtgkigvamlrilkgfgmrllafdpypsaaalelgveyvdlatlykesdv 200
                 *************************************************************************************************** PP

                 .................................................................................................T- CS
                 .................................................................................................xx RF
  2-Hacid_dh 103 .................................................................................................aa 104
                                                                                                                  ++
  CTQ27800.1 201 islhcpltdenyhllnreafdqmkdgvmvintsrgalidsqaaidalkhqkigalgldvyenerdlffedksndviqddvfrrlsachnvlftghqaFL 299
                 *************************************************************************************************** PP

                 BHHHHHHHHHHHHHHHHHHHTTCCGTTBC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 105 Teeaqeniaeeaaenlvaflkgespanav 133
                 T ea+  i e+++ nl ++++ge+++na+
  CTQ27800.1 300 TAEALISISETTLGNLQQVANGETCPNAI 328
                 **************************987 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.1e-07   0.00054      17     111 ..     138     234 ..     129     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.1e-07
                    H-S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEEEE....-SSSSSSB-HHHHCCS-TTEEEEE CS
  AdoHcyase_NAD  17 tdvllaGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadivvt....ttGnkdiitlehlkkmkddaivcn 108
                    t + + Gk+a v+G G +G    + lkg+G r++    dP  +  a+  G e v l ++ k++d++      t  n  ++++e +++mkd ++v n
     CTQ27800.1 138 TGFTMYGKTAGVIGTGKIGVAMLRILKGFGMRLLA--FDPYPSAAALELGVEYVDLATLYKESDVISLhcplTDENYHLLNREAFDQMKDGVMVIN 231
                    667789*************************9875..78988888888899999999999999998532222567899****************99 PP

                    -SS CS
  AdoHcyase_NAD 109 iGh 111
                       
     CTQ27800.1 232 TSR 234
                    754 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.5     4e+03      48      66 ..      37      55 ..       5      74 .. 0.69
   2 !   19.4   0.0   3.7e-07   0.00094       2     114 ..     147     257 ..     146     261 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.5
                   SHHHHHHHCSEEEE-SSSH CS
  NAD_binding_2 48 sieelvasldvvitmvkag 66
                   + ++ ++++++v ++v+++
     CTQ27800.1 37 KTAKTANGCEAVCIFVNDD 55
                   4556666677777777653 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 3.7e-07
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstssped 96 
                     g+iG+G++G  m + l+  g+++ +++  ++++  +++ g++ + +++ l ++ dv+ +  + +++  +++++  ++++k g ++i++s  +  d
     CTQ27800.1 147 AGVIGTGKIGVAMLRILKGFGMRLLAFDPYPSAA--ALELGVEYV-DLATLYKESDVISLHCPLTDENYHLLNReAFDQMKDGVMVINTSRGALID 239
                    59**************************887665..566677555.567899**************999999999********************* PP

                    HHHHHHHHHHTT-EEEEE CS
  NAD_binding_2  97 trelakelkekglkflda 114
                    ++   ++lk +++  l+ 
     CTQ27800.1 240 SQAAIDALKHQKIGALGL 257
                    ************999886 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         2     5e+03      45      73 ..      46      73 ..       9      76 .. 0.56
   2 ?   -1.1   0.0      0.99   2.5e+03      70      94 ..     108     133 ..      85     141 .. 0.70
   3 !   16.3   0.0   4.1e-06      0.01       3      76 ..     149     256 ..     148     285 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2
                -EEEE--S-HHHHHHHHHHHSSS--SEEE CS
      XdhC_C 45 tavvvlthdhklDaealeaalrkkaayig 73
                +av+ +  + +  +++le++ ++ ++yi+
  CTQ27800.1 46 EAVC-IFVNDDGSRPVLEELKAHGVKYIA 73
                3333.334446667777777766677765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.99
                 SEEEESS-.HHHHHHHCTTS.--... CS
      XdhC_C  70 ayigllGS.rkkaarrlerlraagls 94 
                 + ig++ S +++++r ++r r+a++s
  CTQ27800.1 108 HAIGMMMSlNRRIHRAYQRTRDANFS 133
                 36888888345556667777766665 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 4.1e-06
                 EE--STTHHHHHHHHHHHTEEEEEEES-GGGG...................................-GGG-TT-SE.-EEEE--S-HHHHHHHHHHHS CS
      XdhC_C   3 ifGaghvaqalarlaaalgfrvtvvdpreefa...................................tkerfpeade.tavvvlthdhklDaealeaal 65 
                 ++G g+++ a+ r+++ +g+r+  +dp +++a                                   ++e f + ++  +v+  +++  +D +a   al
  CTQ27800.1 149 VIGTGKIGVAMLRILKGFGMRLLAFDPYPSAAalelgveyvdlatlykesdvislhcpltdenyhllNREAFDQMKDgVMVINTSRGALIDSQAAIDAL 247
                 79***************************7667*********999999999999999999999999988999988884455555567789********* PP

                 SS--SEEEESS CS
      XdhC_C  66 rkkaayigllG 76 
                   k + ig+lG
  CTQ27800.1 248 --KHQKIGALG 256
                 ..888999998 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.8e-05     0.071      53     106 ..      42      95 ..      31      99 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.8e-05
                    ..T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT---HHHHHHHHHTT-EEE CS
  CoA_binding_2  53 pepvdlvdvftppeatpeivkealalgakavwlqpgsedeeaaelaeeagirvv 106
                       +++v++f++ +   ++++e++a g+k + l  + +++  +e+a+e g+rvv
     CTQ27800.1  42 ANGCEAVCIFVNDDGSRPVLEELKAHGVKYIALRCAGFNNVDLEAAKELGLRVV 95 
                    357899**********************************************99 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00013      0.33       2      91 ..     142     229 ..     141     246 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-..HHHHHHHHHHHTGGG--TT-EE CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliP..Delqkevyeeeiepnlkegkal 91 
                 + gk+  viG G  G a  + l+  g+ +           + A e g+e +++a + k++dv+ +  P  D  + +++++e  +++k+g ++
  CTQ27800.1 142 MYGKTAGVIGTGKIGVAMLRILKGFGMRLLAFDPYP---SAAALELGVEYVDLATLYKESDVISLHCPltD-ENYHLLNREAFDQMKDGVMV 229
                 568999*********************986544333...47899**********************99423.34567888888999998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2627.01
//
Query:       CTQ27801.1  [L=166]
Description: DedA family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-11   44.3   7.6    2.2e-11   44.3   7.6    1.5  1  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   7.6   1.2e-15   2.2e-11       1     118 [.      38     159 ..      38     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 1.2e-15
  SNARE_assoc   1 lPsevllvaaGvlf.glllgtlvtslgallGaslayllgrylgr....kalrrkllsekrvkalerlverygflallllrllpivPrdlvnyvaGltr 93 
                  +P++  l+++G ++   l  +l+ +  a+lGa+ +++l+ +lg     +    ++l  +r+ ++  +++ryg +a++++r+l  + r+ +++v G+++
   CTQ27801.1  38 IPGTSGLLLLGTFAsASLGHFLLMWSSASLGAIGGFWLSWRLGIryrhRLTHLRWLTAERLARSRLFFQRYGPWAIFFSRFLSPL-RATLPFVSGASS 134
                  576666656666653445578888888888888888888777766666888889999999999*********************9.************ PP

  SNARE_assoc  94 vsfkrFflatfiGsipwalvyaylG 118
                  ++++ F la++ + ++w l+++  G
   CTQ27801.1 135 LPLWSFQLANVSSGLLWPLLLLAPG 159
                  *****************99988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1302.34
//
Query:       CTQ27802.1  [L=49]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 395.20
//
Query:       CTQ27803.1  [L=879]
Description: hypothetical protein CH1034_190286 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-63  213.7   0.1    9.7e-63  211.6   0.1    2.1  2  DctA-YdbH  Dicarboxylate transport
  ------ inclusion threshold ------
      0.039   14.1   0.1        0.7   10.1   0.0    3.2  4  DUF748     Domain of Unknown Function (DUF748)


Domain annotation for each model (and alignments):
>> DctA-YdbH  Dicarboxylate transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.76   6.8e+03      91     110 ..     250     269 ..     249     280 .. 0.87
   2 !  211.6   0.1   1.1e-66   9.7e-63       1     206 []     657     858 ..     657     858 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.76
   DctA-YdbH  91 LPlvldkggvsienGrLaar 110
                 LP +++ + ++i++Gr + r
  CTQ27803.1 250 LPWEITPERITICDGRWRTR 269
                 899999*********97766 PP

  == domain 2  score: 211.6 bits;  conditional E-value: 1.1e-66
   DctA-YdbH   1 riaelnpgvpitdikadlqgeyplleakplqlskasadllgGelsleelrldlkkqkqeavlrlsgldlaellalqklkglaatGkldGtLPlvldkgg 99 
                 ri e+ ++v++++++adlqg+ p++ea+plqls++s+dllgG+l+l +lr++   q+++a++rl++++ +el  ++k+k++a++G+++G LPl+l++++
  CTQ27803.1 657 RIGEIVNQVTARNLTADLQGTWPWSEANPLQLSDVSVDLLGGKLTLLQLRMP---QRDPALIRLQHISSSELTSAVKVKQFAMSGAVSGALPLWLENNQ 752
                 6899************************************************...9******************************************* PP

   DctA-YdbH 100 vsienGrLaarapgglrvdgeaavealaqsnpslklafdaLenleyseLsstldlapdGeltlkvrlkGknpdlekgrpvnLNynheenllqLlrslri 198
                 ++i++G+L++++p++lr+d+++a +al ++n s+++a+++L+++e+s+++++++l++ G ltlk++++G+++   k + v+LNy heen+++L+rslr+
  CTQ27803.1 753 WIIHDGWLRNDGPMTLRLDKDTA-DALVADNVSAGAAINWLRYMEISRSWTQINLDNLGVLTLKASINGTSRVEGKSSTVHLNYAHEENIFDLWRSLRF 850
                 ***********************.*************************************************************************** PP

   DctA-YdbH 199 gdnleeki 206
                 gdnl+ ++
  CTQ27803.1 851 GDNLQAWL 858
                 *****986 PP

>> DUF748  Domain of Unknown Function (DUF748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.43   3.9e+03      16      45 ..      73     105 ..      72     111 .. 0.63
   2 ?   -1.8   0.0      0.34   3.1e+03      30      52 ..     168     191 ..     152     210 .. 0.64
   3 ?   10.1   0.0   7.8e-05       0.7      45     128 ..     535     616 ..     506     620 .. 0.82
   4 ?   -2.8   0.0      0.69   6.2e+03      97     111 ..     691     706 ..     664     741 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.43
      DUF748  16 afaDrslsppfk..ltlselnltlsnlsslp.e 45 
                 +++D++ls+p++  l + +l+++   ls+lp +
  CTQ27803.1  73 RVTDARLSRPSRwrLHIGQLEINSACLSKLPaS 105
                 578888888888335555666655666666644 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.34
      DUF748  30 lselnltlsnls.slpeqpadvel 52 
                 l+  +lt+s++s +l++++ +v+l
  CTQ27803.1 168 LRGQALTVSQFSaRLTDDQPPVKL 191
                 444444444444223344444444 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 7.8e-05
      DUF748  45 eqpadvelsgavnkg..gplqisGtlnplplaselelslkgldLaplspYlakylglelesGkLsldlryklakgdklkltaegnl 128
                  +p+ ++++ga+     gp+++sG+   +  ++++++   + +L+ ++p +++  ++ l++G L ++++ ++a+g+   ++a g+ 
  CTQ27803.1 535 RDPTWFQFTGALHAEaiGPVRLSGRW--DGERLRGQAWWPKQSLTVFQPLVPPDWKMNLREGSLYAQVAFSAAAGQ--GFEAGGHG 616
                 55667777888877778999999999..789999999999**************************9999954433..46666655 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 0.69
      DUF748  97 lglelesGkLsl.dlr 111
                 + ++l  GkL+l +lr
  CTQ27803.1 691 VSVDLLGGKLTLlQLR 706
                 4445555555553333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (879 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 6164.76
//
Query:       CTQ27804.1  [L=61]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-18   64.2   4.1      8e-18   63.9   4.1    1.1  1  Lipoprotein_19  YnbE-like lipoprotein


Domain annotation for each model (and alignments):
>> Lipoprotein_19  YnbE-like lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   4.1   4.4e-22     8e-18       2      34 .]      27      59 ..      26      59 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 4.4e-22
  Lipoprotein_19  2 dkPItINLNVkIehEvrvkvdkdvddlieenpg 34
                    ++PItIN+NVkIehE+++kvdkdv++l++++++
      CTQ27804.1 27 KEPITINMNVKIEHEIHIKVDKDVENLLKSRSD 59
                    8*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 461.36
//
Query:       CTQ27805.1  [L=107]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.3e-30  103.3   0.5    8.4e-30  103.1   0.5    1.0  1  DUF1318       Protein of unknown function (DUF1318)
  ------ inclusion threshold ------
      0.084   13.2   0.0        0.1   12.9   0.0    1.3  1  PG_binding_3  Predicted Peptidoglycan domain


Domain annotation for each model (and alignments):
>> DUF1318  Protein of unknown function (DUF1318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.5   9.4e-34   8.4e-30       3      92 .]      19     107 .]      17     107 .] 0.97

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 9.4e-34
     DUF1318   3 aaalkldeakaqGlvGetadGylgvvkaaaaearalvkaiNakRkavYteiAaknglsleevaklaaekliekaksGeyvqeanGkWvkK 92 
                 a al+l+ea++qG vGet +Gyl+  +++ +e+ alvk+iNa+R+++Y+++A+ n+l+++evak+a++kl+++a++Geyvq+ nG+W +K
  CTQ27805.1  19 ALALTLSEARQQGRVGETLNGYLAPLRQD-KETLALVKQINAARSESYQQLADDNNLPVDEVAKMAGQKLVARAQPGEYVQGLNGQWLRK 107
                 6789***********************96.9*********************************************************98 PP

>> PG_binding_3  Predicted Peptidoglycan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.1e-05       0.1      21      62 ..      31      73 ..      19     106 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
                  S---HHHHHHH.....HHS-HHHHHHHHHHHHHHHHHHHHHHHH CS
  PG_binding_3 21 GiiGpkTlaAve..arasadedaLlkainlarrefyldlaerri 62
                  G +G  Tl+      r++++  aL+k in ar e y++la+ + 
    CTQ27805.1 31 GRVGE-TLNGYLapLRQDKETLALVKQINAARSESYQQLADDNN 73
                  66663.55554445689999999*****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 861.67
//
Query:       CTQ27806.1  [L=300]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-23   83.9   1.8    1.4e-23   83.4   1.8    1.2  1  AraC_binding_2  AraC-binding-like domain
    2.8e-22   78.8   0.1    5.7e-22   77.8   0.1    1.5  1  HTH_18          Helix-turn-helix domain
    1.8e-11   43.8   0.1    4.8e-09   36.1   0.0    2.8  2  HTH_AraC        Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.21   11.3   0.0    1.3  1  Cupin_2         Cupin domain


Domain annotation for each model (and alignments):
>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   1.8   3.2e-27   1.4e-23       1     172 []      14     184 ..      14     184 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 3.2e-27
  AraC_binding_2   1 wreavarvfvphrlrplgadrfdarlrsarlgdlslgrlryg......aavsirpselddfylvqlplsGraeveqggrevvlgpgdavvldpgr 89 
                     w + + +v++ +  rpl+ ++f+++++++ +g+l ++++++       +  +i ++  d+++   ++l+G+a +eq++r+v+l++gd +++d++r
      CTQ27806.1  14 WLATINQVCGHFAARPLE-ESFHGEIDARYAGSLKVSTVTAAgvnlyrTRNEIKRDN-DAWFYTVFQLAGEAIIEQDDRQVTLAAGDITLIDAAR 106
                     667899***********9.*********************99777777777888888.77*********************************** PP

  AraC_binding_2  90 pyrlrwsadceqlvlripralLerplraplrfaprldldsgagalwrrllrslvaelaelgpalasspllaaqleeLlaslLl 172
                     p++++w+++++q +l +pr+ +  ++ +++ +a rld + ++ +l +rll + +  + +l+  +++s++++++++ Ll+ +L+
      CTQ27806.1 107 PCSIVWQQTSRQASLLLPRQRV--APTGDITTACRLDKSLPMVQLSQRLLLESMGGT-TLS--ASESEAALEAIACLLRPVLH 184
                     ********************99..78888****************************.565..6899***********99985 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.1   1.3e-25   5.7e-22       1      81 []     218     298 ..     218     298 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 1.3e-25
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHS.SS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLle.ntglsvaeiAlalGFsdlsrFsrafrklfgetPseyrrr 81 
                 la ++g+s r+L+rlf +  gl +++y++++Rl+ + ++L + + + ++a i +++GFsd s+Fs+af+++fg+tP++yr+r
  CTQ27806.1 218 LASETGMSVRSLYRLFAD-QGLVVAQYIKNRRLDLCAQALQNvHDDEKLAGIGYRWGFSDHSHFSTAFKQRFGVTPGQYRKR 298
                 799***************.*********************6667899*********************************97 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0067        30      14      30 ..     218     234 ..     217     245 .. 0.84
   2 !   36.1   0.0   1.1e-12   4.8e-09       3      42 .]     257     297 ..     256     297 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0067
                 HHHHTTSSHHHHHHHHH CS
    HTH_AraC  14 iAdelgfSrsyFsrlFk 30 
                 +A+e g+S + ++rlF 
  CTQ27806.1 218 LASETGMSVRSLYRLFA 234
                 6999***********95 PP

  == domain 2  score: 36.1 bits;  conditional E-value: 1.1e-12
                 CCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   3 enlstnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 +n +++ +++ i   +gf + s+Fs++Fk+++G+tP qyr+
  CTQ27806.1 257 QNVHDDEKLAGIGYRWGFsDHSHFSTAFKQRFGVTPGQYRK 297
                 56688899999****************************96 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.7e-05      0.21      24      54 ..      77     107 ..      66     122 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.7e-05
                 EEEESEEEEEECTEEEEEETTEEEEE-TT-E CS
     Cupin_2  24 yVleGegeltvdgeeveleaGdsvyfpagtp 54 
                 + l Ge+ ++ d+++v+l aGd+ +++a +p
  CTQ27806.1  77 FQLAGEAIIEQDDRQVTLAAGDITLIDAARP 107
                 5589**********************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2280.17
//
Query:       CTQ27807.1  [L=499]
Description: phenylacetaldehyde dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     4e-161  536.6   0.0   4.6e-161  536.4   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  536.4   0.0  2.6e-165  4.6e-161       5     462 .]      33     495 ..      29     495 .. 0.97

  Alignments for each domain:
  == domain 1  score: 536.4 bits;  conditional E-value: 2.6e-165
                 SSSEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH..HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHH CS
      Aldedh   5 esetievinPatgeviakvpaataedvdaavaaAkeafk..awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryy 100
                 +++++ v +Patg+ ia++++a+++dvd+av +A +af   +wa  ++++R++iL ++adl+e++ eela+letle+Gk++a +ra ev  +++++ry+
  CTQ27807.1  33 SENRLTVWDPATGQAIATTADASPADVDRAVMSAWRAFVdrRWAGRTPADRERILLRFADLVEQHGEELAQLETLEQGKSIAISRAfEVGCTLNWMRYT 131
                 33679*********************************9779********************************************************* PP

                 HHHHHHHSEEEEEEC......TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SST CS
      Aldedh 101 aelaeklegevlpss......egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsg 193
                 a+l +k++g++l +s      ++++a++++eP+Gvv+ I+PWNfPl++ +wk++palaaG+++v+KP+e+tpl+ l++ael+ +ag+P+gv+nvvtgsg
  CTQ27807.1 132 AGLTTKISGRTLDVSipfpqgARYQAWTKKEPVGVVAGIVPWNFPLMIGMWKVMPALAAGCSIVIKPSETTPLTLLRVAELATQAGIPDGVFNVVTGSG 230
                 ***********555445666799**************************************************************************** PP

                 CCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHH CS
      Aldedh 194 sevgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklvea 292
                 + +g+al++hp+v+kvsftGst++g++ia+ aa++l+rvtlElGGknp+ivl+daD + ++e++++g+f+n+GQvC a sr++++  ++d +v+ + +a
  CTQ27807.1 231 AGCGAALTAHPQVAKVSFTGSTATGKQIARVAADRLTRVTLELGGKNPAIVLKDADPQWVIEGLMTGSFLNQGQVCAASSRIYIEAPLFDTLVSGFEQA 329
                 *************************************************************************************************** PP

                 HHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHH CS
      Aldedh 293 akklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaN 391
                 +k+l+vg +++e+ ++ P++s+a+ +kv +y+eea+++ a+l+ G+      ++ gy++ Pt++ n +   r+ +eE+FGPV+ ++++ d eea+++aN
  CTQ27807.1 330 VKSLQVGPGMQETAQINPVVSRAHCDKVAAYLEEARQQKAELISGS---AGPDAGGYYIPPTLVVNPDAGLRLSREEVFGPVVNLVRVADGEEALRLAN 425
                 ********************************************99...6778899******************************************* PP

                 SSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 392 dteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 d+++GL+a+v+t+dl++a+++++rl+aG+v++N++t  +a+  pfgG+kqSg+Gr+ g++ l+ ++e+k+v
  CTQ27807.1 426 DSDFGLTASVWTRDLTQALNYTDRLQAGTVWVNSHTLIDANL-PFGGMKQSGTGRDFGPDWLDGWCETKSV 495
                 *****************************************9.**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3740.25
//
Query:       CTQ27808.1  [L=296]
Description: putative 2-dehydropantoate 2-reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-23   82.4   0.0    3.6e-23   81.9   0.0    1.2  1  ApbA            Ketopantoate reductase PanE/ApbA
      7e-23   81.2   0.0    9.3e-23   80.8   0.0    1.2  1  ApbA_C          Ketopantoate reductase PanE/ApbA C terminal
    0.00014   22.4   0.0    0.00032   21.2   0.0    1.6  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
     0.0035   17.3   0.1      0.013   15.5   0.1    1.8  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
      0.007   16.4   0.0      0.013   15.6   0.0    1.4  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
       0.11   10.7   0.0       0.16   10.1   0.0    1.2  1  COG7            Golgi complex component 7 (COG7)
       0.13   12.4   0.0       0.21   11.8   0.0    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy


Domain annotation for each model (and alignments):
>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   1.4e-26   3.6e-23       1     151 [.       7     149 ..       7     150 .. 0.95

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 1.4e-26
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEEEE CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldpntvvl 99 
                 +a +G+GaiG+++aa L + g+ + +++r++      +  l l++++ge +++ p+ +++   + ++p+dlv+v+vK++qte+ + ++ +l+ p+ vv+
  CTQ27808.1   7 VALIGPGAIGTTIAAALFERGRAPMVCGRTA------HSALVLRTDEGEIVVPGPVYTDPM--AIAAPFDLVFVAVKTTQTEAIAPWLTALCSPDIVVC 97 
                 688****************************......566999999999999999999999..99********************************** PP

                 EESSSSCHHHHHTTTSTTSEEEEEEEE-EEEEEETTEEEECS--EEEEEESS CS
        ApbA 100 llqNGlgheeelrealpkprvlggvtthgatregpgevhhagkgeikigela 151
                 +lqNG+++ ++++   + ++vl+ v+++ a+r+++  v +++  ++++ +l+
  CTQ27808.1  98 VLQNGVEQRQQFAPLTGGATVLPSVVWFPAQRDADASVWLRATPRLTLPDLP 149
                 **************************************99998888887765 PP

>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   3.6e-26   9.3e-23       1     123 [.     170     290 ..     170     292 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 3.6e-26
      ApbA_C   1 dirlarweKllinaainpltalldckngellespelralvrallkEalavaeaegvelseerleeaveavlektaanrsSMlqDveagrktEidyinGa 99 
                 d+++++w+Kll+n a+ +l +l++ + g +   +++ al  a+l+E+l+va+aeg++ls+   ee+++ + ++ a+ ++S+l D ++gr++E+d  nG 
  CTQ27808.1 170 DFTTVAWRKLLQN-AVAGLMVLTGRRAGMFA-REDITALGLAYLRECLQVARAEGAALSDSVPEEIIAGFHRAPADLSTSILIDRLNGRPLEWDIRNGV 266
                 67899********.99**********99877.899********************99****8888888888888888********************** PP

      ApbA_C 100 vvklAeklgvetPvnellyellka 123
                 v ++++++g++tP  + ++ ll a
  CTQ27808.1 267 VQRRGRQHGIPTPLSDIIVPLLAA 290
                 ******************999875 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.3e-07   0.00032       1      92 [.       6      96 ..       6     101 .. 0.83
   2 ?   -2.8   0.0       3.9     1e+04      82      96 ..     240     254 ..     221     255 .. 0.59

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.3e-07
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC....-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEE CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg....vkvtavdneeaaeeadvvvlavkpedveevlselakdalkgklvi 92
                   k+++iG G +g ++a  l ++g   +  + ++ r+ ++a  l+ + g    ++   +d    a+  d v++avk++++e+++  l  ++ +  +v+
     CTQ27808.1  6 KVALIGPGAIGTTIAAALFERG---RAPM-VCGRTAHSALVLRTDEGeivvPGPVYTDPMAIAAPFDLVFVAVKTTQTEAIAPWL-TALCSPDIVV 96
                   79********************...6666.569*********98877788866666678888889*************9998766.6666666665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.9
                    GHHHHTTSEEEEESS CS
  F420_oxidored  82 akdalkgklvisvla 96 
                    a+++l+ +++i+ l+
     CTQ27808.1 240 APADLSTSILIDRLN 254
                    345667777777666 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   5.1e-06     0.013       1     109 [.       6     106 ..       6     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.1e-06
                     -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--T CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqalrevlkklkgllkk 95 
                     k+a++G G+ Gt++A++l e+g   ++ +r ++ + ++++++ +   +pg        ++td  + ++  d+++++v +  ++ ++  l++l ++
      CTQ27808.1   6 KVALIGPGAIGTTIAAALFERGRAPMVCGRTAHSALVLRTDEGE-IVVPG-------PVYTDPMAIAAPFDLVFVAVKTTQTEAIAPWLTALCSP 92 
                     79********************9999999999888888876544.44666.......46788888888899999999999999999999999999 PP

                     T-EEEE---SEET. CS
  NAD_Gly3P_dh_N  96 kailvsliKGieeg 109
                     + ++  l  G+e+ 
      CTQ27808.1  93 DIVVCVLQNGVEQR 106
                     99999999999874 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.9e-06     0.013      14      86 ..       6      77 ..       2      87 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.9e-06
                  EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSS CS
  Shikimate_DH 14 kvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisatase 86
                  kv liG G +++ +a +L ++g    +v +Rt + a  l+++ ++  +    +++ +++ a +d+v++a++++
    CTQ27808.1  6 KVALIGPGAIGTTIAAALFERGRA-PMVCGRTAHSALVLRTDEGEIVVPGPVYTDPMAIAAPFDLVFVAVKTT 77
                  899****************99877.789***********99998886777778999999999*****998765 PP

>> COG7  Golgi complex component 7 (COG7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   6.4e-05      0.16     169     207 ..      72     110 ..      61     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6.4e-05
        COG7 169 yaerrkqlEalknRLEAlvsPsvvqaltsqdvdqakkyv 207
                  a +++q Ea+   L Al+sP +v ++ ++ v+q +++ 
  CTQ27808.1  72 VAVKTTQTEAIAPWLTALCSPDIVVCVLQNGVEQRQQFA 110
                 677999*****************************9985 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.1e-05      0.21       1      70 [.       6      80 ..       6     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.1e-05
                   EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT......EEE-SSHHHHHHHCSEEEE-SSSHHHHH CS
  NAD_binding_2  1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg......akaaesieelvasldvvitmvkagkavd 70
                   k+++iG G +G+ +a  l ++g   +v  rt+ ++  l +++        +++++ +++a  d+v++ vk ++ ++
     CTQ27808.1  6 KVALIGPGAIGTTIAAALFERGRAPMVCGRTAHSALVLRTDEgeivvpGPVYTDPMAIAAPFDLVFVAVKTTQ-TE 80
                   699****************************9988888877679988877899999999999*******9854.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2257.44
//
Query:       CTQ27809.1  [L=327]
Description: putative oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00021   21.2   0.0    0.00034   20.5   0.0    1.3  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    0.00038   21.5   0.0     0.0013   19.8   0.0    1.9  2  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.8e-08   0.00034       2      60 ..      42      99 ..      41     104 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.8e-08
                TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEE CS
       ADH_N  2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVv 60
                g v+++++ a ++ sDl  ++g  + +++lp + G E  Gev+++  + ++l+ G+rV+
  CTQ27809.1 42 GRVRVRMRFAPVNPSDLIPVTGAYRHRTRLPAVAGYEGLGEVVAAPYG-SRLAAGQRVL 99
                5799***************************************97655.68999*9997 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.83   7.4e+03      46      92 ..     150     194 ..     136     198 .. 0.59
   2 !   19.8   0.0   1.4e-07    0.0013      12     133 .]     206     322 ..     195     322 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.83
                   EEE.EEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHH CS
  ADH_zinc_N_2  46 gGr.lvsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadilee 92 
                    Gr lv  + ++++++ l+++a+    ++++++ ++ ++++++a+ le+
    CTQ27809.1 150 AGRhLVLTAaSSSCASLLGQWALA--MGARSVSGII-RSPQHRAR-LEQ 194
                   566233333233366666666663..4667777777.67774444.766 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 1.4e-07
                   TTHHHHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-......-HHHHHHHHHHHHHHH-- CS
  ADH_zinc_N_2  12 edfeaatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas.....aqadileelaalieeGklr 103
                     + +++ +++ D+v+d+vgge +   +l+vlpg  +l+s+g        +++++ r++++v+   l ++ ++      +a  ++e+ + +      
    CTQ27809.1 206 ALM-EKV-SQHSDLVFDAVGGELA-NTLLSVLPGSSTLISYGLL----SGRPLTQTRGSATVRKFHLREALPTlsvaaWRAA-FDEIWQRLPTT--S 292
                   344.355.5779**********88.9999*****9*****9952....2222222233344433333333333333422444.66666666655..4 PP

                   --EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2 104 pvvdrvfpleeaaeAhrylesgrarGKiVl 133
                    ++ ++  l++ +eA+++  +    GKi l
    CTQ27809.1 293 QPPAQRIALNDWREAIAAAGQPGRGGKILL 322
                   455567999999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2653.62
//
Query:       CTQ27810.1  [L=755]
Description: tyramine oxidase, copper-requiring [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.9e-128  426.7   0.1   1.1e-127  426.3   0.1    1.1  1  Cu_amine_oxid    Copper amine oxidase, enzyme domain
    1.5e-30  105.6   0.0    1.8e-28   98.9   0.0    2.7  2  Cu_amine_oxidN3  Copper amine oxidase, N3 domain
    1.3e-28   99.0   1.0    2.3e-28   98.3   0.1    1.9  2  Cu_amine_oxidN2  Copper amine oxidase, N2 domain
    5.6e-13   49.2   0.0    1.7e-12   47.6   0.0    1.8  1  Cu_amine_oxidN1  Copper amine oxidase N-terminal domain


Domain annotation for each model (and alignments):
>> Cu_amine_oxid  Copper amine oxidase, enzyme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.3   0.1  2.6e-131  1.1e-127       2     406 ..     337     750 ..     336     754 .. 0.94

  Alignments for each domain:
  == domain 1  score: 426.3 bits;  conditional E-value: 2.6e-131
                    ----TT---SEEETTTEEEETTEEEEEEEETTTEEEEEEEEETT....EEEEEEEEEEEEEEEE--SSHHHHH-EEEGGGT.-SGGG-----TTTS CS
  Cu_amine_oxid   2 evvqpeGpsfkvdegnlvewqkWsfrvgfnrreGlvlhdvrykg....rrilyrlslsemvvpYgdprppasrkaafDlgeyglGklansLelgcD 93 
                    e+++peG+++++ +g +++wq+W+f++++n r G++l++v+y++    r+++y+ sl  m+vpYgdp+  +++ka++D+g+yg+G+l++++++g D
     CTQ27810.1 337 EITEPEGKNYTI-TGDTIHWQNWDFHLRLNSRVGPILSTVTYNDngtkRQVMYEGSLGGMIVPYGDPDVGWYFKAYLDSGDYGMGTLTSPIVRGKD 431
                    79**********.8********************************************************************************** PP

                    S-TT-EEEEEEEEE..TEEEEEEEEEEEEEEE-S-SEEEE-S....EEEE--EEEEEEEEEEETTEEEEEEEEE-TTS-EEEEEEEEE----EE-T CS
  Cu_amine_oxid  94 ClgeityldavladssgepvtiknaiCifEedagilwkHtdfrtgraevtrnreLvvrtiatvgNYdYifdyiFkqdGsievevratGilstaala 189
                     ++++  ld ++ad +g+p+ti+ a++ifE++ag+ +kH ++  + +++t++reLvvr+i+tvgNYdYifd++F+ +G+i +++ atGi  ++ + 
     CTQ27810.1 432 APSNAVLLDETIADYTGKPTTIPGAVAIFERYAGPEYKHLEMG-KPNVSTERRELVVRWISTVGNYDYIFDWVFHDNGTIGIDAGATGIEAVKGVL 526
                    *****************************************93.349999***************************************9999887 PP

                    .............GG--EEETTEE---EEEEEEEEEEE-T.SSEEEEEEEEE-T..TT.T-...-EEEEEEEEEE--BGGG-EE--.-GG-EEEEE CS
  Cu_amine_oxid 190 eee..e......skygtrvapgvlasiHqHlfslrvDldidgeknsvveeelvpeepelgeenpagnafkvektvletekeaaldldpeknrvlki 277
                    +++  +      ++ygt ++++++++ HqH+ ++r+Dld+dge+n++v ++ +  +p++ +  p++++++v++ ++++e++aa ++dp  ++   +
     CTQ27810.1 527 AKTmhDpsakedTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNTLVAMDPEV-KPNT-AGGPRTSTMQVNQYTIDSEQKAAQKFDP--GTIRLL 618
                    7666524556667*************************************9976.3433.3579**********************76..667778 PP

                    EEEEEE-TTS-EEEEEEE-....S----..---SS-TTTTTTTGGGG-SEEEEE--TT---S--TTGG-TTS.---GGGG-.S--B-SSEEEEEEE CS
  Cu_amine_oxid 278 vnenkknklgepvgYklvp....ssaasqlllakesslvakraefakhhlwvtkykdselyaageynnqskgepvglakwvednesieneDlVvWv 369
                     n++k+n++g+pv+Y+++p    +++a +   +++++++ +r +f++++lwvt+y+++e+y++g+y+n+s++ ++gl ++++d+es++n+D VvW+
     CTQ27810.1 619 SNTSKENRMGNPVSYQIIPyaggTHPAATGAKFAPDEWIYHRLSFMDKQLWVTRYHPTERYPEGKYPNRSAH-DTGLGQYAKDDESLTNHDDVVWI 713
                    99*****************987767777778899************************************99.58********************* PP

                    EEEEEE---GGGSS-TTTSEEEEEEEEES-SSS-GGG CS
  Cu_amine_oxid 370 tlGltHvpraeDfPvmpvetvsflLkPvnFfdenpal 406
                    t+G+tHv rae++P+mp+e+++ lLkP+nFfde+p+l
     CTQ27810.1 714 TTGTTHVARAEEWPIMPTEWAHALLKPWNFFDETPTL 750
                    ***********************************97 PP

>> Cu_amine_oxidN3  Copper amine oxidase, N3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.019        86      77      92 ..     193     208 ..     191     212 .. 0.90
   2 !   98.9   0.0     4e-32   1.8e-28       2     101 .]     216     317 ..     215     317 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.019
                      EEEEEE--SSSGGG-E CS
  Cu_amine_oxidN3  77 LellvDleakkvieit 92 
                      +e++vDl++kk++ +t
       CTQ27810.1 193 IEAVVDLQNKKILSWT 208
                      689************8 PP

  == domain 2  score: 98.9 bits;  conditional E-value: 4e-32
                      ---HHHHHHHHHHHHTGGGGHHHHHHHHTTT.T---EEEE--SS-SSST....T--EEEEEEEE--SSS-GCGSEEE.EEEEEE--SSSGGG-E CS
  Cu_amine_oxidN3   2 pvlleelaeieevikelpqfkealkkrgienldkvvltpltvgyrgeks...egkRllkalvyyrtesanlyahPiegLellvDleakkvieit 92 
                      +vll+++++++++i+ +++f+e+lkk+gi++++kvv+tpltvg+++ k+   +++Rllk+++y++t+++n++ahPie+L+++vDleakk+i+i+
       CTQ27810.1 216 MVLLDDFVSVQNIINASSEFAEVLKKHGITDPGKVVTTPLTVGFFDGKDgpqQDARLLKVVSYLDTGDGNYWAHPIENLVAVVDLEAKKIIKIE 309
                      89*************************************************99***************************************** PP

                      EEEEEETTE CS
  Cu_amine_oxidN3  93 dqkvlvpvp 101
                      +   ++pvp
       CTQ27810.1 310 EGP-VIPVP 317
                      *99.88886 PP

>> Cu_amine_oxidN2  Copper amine oxidase, N2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.1   5.1e-32   2.3e-28       1      86 [.     124     209 ..     124     210 .. 0.95
   2 ?   -2.2   0.1       1.1   5.1e+03      71      83 ..     295     307 ..     291     309 .. 0.84

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 5.1e-32
                      HHHHHHHHHHHHHCCCCCCCCTCT-TTSEEEEEEEEE---HHHHHHHHHCH---..S-EEEEEEEEETSSSSEEEEEEEEEECCSEEE CS
  Cu_amine_oxidN2   1 hpLdaltaaeinkvesilkssaletskknsffeveLeePdKkavlqflekgepp..ppRkAsvvilfGkqtkelvvdLatgkllspry 86 
                      hpL++l+aaei+++++i+k++  e++++++f+e++L+ePdK+av++f + +++p  +pR+A+vv+l+Gk+ +e+vvdL+++k+ls+++
       CTQ27810.1 124 HPLNSLSAAEISEAVTIVKAAP-EFQPNTRFTEISLHEPDKAAVWAF-ALQGTPvdAPRTADVVMLDGKHVIEAVVDLQNKKILSWTP 209
                      9*********************.************************.55555559******************************97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
                      EEEEEEEEEECCS CS
  Cu_amine_oxidN2  71 elvvdLatgklls 83 
                       +vvdL  +k+++
       CTQ27810.1 295 VAVVDLEAKKIIK 307
                      689******9986 PP

>> Cu_amine_oxidN1  Copper amine oxidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   3.8e-16   1.7e-12       6      80 ..      37     110 ..      33     118 .. 0.94

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 3.8e-16
  Cu_amine_oxidN1   6 lvPlraiaealGakvewdeetktVtikkgdktiklkigsneatvngkeikldvapklinngrtyvPlrfvaealg 80 
                      +vPl  + +++Ga+v+wd+  ++ t+ k++ ++k+k+g ++a+vngk + l+v++ ++++g+ +v+  f+++++ 
       CTQ27810.1  37 MVPLDKTLQEFGADVQWDDYAQMFTLIKDGAYVKVKPGAKTAIVNGKSLDLPVPV-VMKEGKAWVSDTFINDVFQ 110
                      9******************************************************.7777**********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 5438.95
//
Query:       CTQ27811.1  [L=681]
Description: fused aldehyde dehydrogenase; enoyl-CoA hydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-59  201.6   0.1      2e-59  201.3   0.1    1.1  1  Aldedh           Aldehyde dehydrogenase family
      8e-32  109.4   0.0    1.6e-31  108.5   0.0    1.4  1  MaoC_dehydratas  MaoC like domain
  ------ inclusion threshold ------
      0.058   13.5   0.0        0.2   11.8   0.0    2.0  1  MaoC_dehydrat_N  N-terminal half of MaoC dehydratase


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.3   0.1   3.4e-63     2e-59      12     459 ..      22     496 ..      12     499 .. 0.82

  Alignments for each domain:
  == domain 1  score: 201.3 bits;  conditional E-value: 3.4e-63
                 EETT.TCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH.HS CS
      Aldedh  12 inPa.tgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaek.le 108
                 i+ a tg  + +v++ + + ++a   a ++  ka +++++ eR+++L+++a+ l e+k+++ ++ ++ tG + a++  ++e  i +l  ya+l ++ l 
  CTQ27811.1  22 IHHAiTGAALWEVTSEGLDMAQARRFAIERGGKALQTMTFIERSAMLKAVAKHLLEQKDQFYAISAQ-TGATRADSWVDIEGGIGTLFTYAGLGSReLP 119
                 44444777888887777666666666667788899**************************987665.9************************999788 PP

                 EEE.......EEEC..TTEEEEEEEEE-.SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTT.S-TTSEEE--SSTCCH CS
      Aldedh 109 gev.......lpss..egklalvrrePl.GvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeag.lPkgvlnvvtgsgsev 196
                 +++       +p s   g  a  +     Gv + I ++NfP+  ++ klap  +aG   ++KPa+ t+  + ++++++ + g +P+g++++++g    +
  CTQ27811.1 120 DDIlwpedelIPLSkqGGFAARHVLTSKsGVAVHINAFNFPCWGMLEKLAPTWLAGMPAIIKPATATAQLTQAMVKAIVDSGlVPEGAISLICG---GA 215
                 89955555554442454555555555556***************************************9999999998888637**********...35 PP

                 HHHHHH-TTESEEEEES-HHHHHHHHHHHH..CTTSEEEEEE---EEEEE-TTS.....HHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHH CS
      Aldedh 197 gealvehpevdkvsftGstevgrkiakaaa..knlkrvtlElGGknplivleda.....DldkaveaivkgafgnaGQvCiaasrllvqesiydefvek 288
                 g+ l + ++ d+v+ftGs ++g+++ ++ +  ++  ++t+E  + n ++  ed+     ++   ++++v+ ++  aGQ+C+a++r++v+    +++ ++
  CTQ27811.1 216 GDLLDHLDSQDVVTFTGSAATGQQLRAHPNlvAKSIPFTMEADSLNCCVLGEDVtpeqpEFALFIREVVREMTAKAGQKCTAIRRIIVPLAQINAVSDA 314
                 77777777789***************996656888**************777763333568899*********************************** PP

                 HHHHHHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSH..HHHS---SSEEEEEEESSHHH CS
      Aldedh 289 lveaakklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmr..iaqeEiFGPVlsvikfkdeee 385
                 l+ ++ k++vgdp +e +++G+l++++q++ v++ v++ +++g+++llGg  e +  + g+f+ Pt+l   +pd +  ++  E FGPV+++++++d ++
  CTQ27811.1 315 LISRLHKVTVGDPAQEGVKMGALVNSEQRQDVQESVNKLIAAGCEVLLGG--EADLSAAGAFFPPTLLYCSQPDETpaVHAIEAFGPVATLMPYRDRQH 411
                 **************************************************..667899**********99888775337888***************** PP

                 HHHHHHSSSEESEEEEE-SBHHHHHHHHHHS..-SSEEEE.SSS.......ST--TTTSEB--CGGGEES-BSH.HHHHHHTEEE CS
      Aldedh 386 aieiaNdteyGLaagvftkdleraervaerl..eaGnvyi.Nds.......ttgaaealpfgGvkqSglGregg.kegleeytev 459
                 a+ +a +    La++++t++ e a++++       G ++i N+        + +   +l +gG ++ g G+e g   ++++y++ 
  CTQ27811.1 412 ALTLARAGGGSLAGTLVTASGELAREFILGAarAHGRIQIlNEAssaestgHGSPLPQLVHGGPGRAGGGEELGgLRSVKHYMQR 496
                 ************************9997554435677776344432221111111222457888888888666657777777776 PP

>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.0   2.6e-35   1.6e-31       6     120 ..     536     649 ..     532     652 .. 0.93

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 2.6e-35
                      TTSEEEEEEEEEEEHHHHHHHHHHHT---GGGT-HHHHHHTTTSSSB--HHHHHHHHHHHHHHHHSTTEGGGEEEEEEEE-S--BTTCEEEEEE CS
  MaoC_dehydratas   6 igekvetekeitvteadialyalvsgDlnpiHvdpefAkkagfggpIahGmltlaivaklveeelgdnvvarvgeikvrFtkpVlpgdtlkvel 99 
                      +g+++ t +++t+teadi+++a++sgD+++ H+d+ +A++++fg++++hG++  +++a+l+++ +   v+a++g++++rF++pV pgdt++v+l
       CTQ27811.1 536 PGDSLLT-PRRTLTEADIVNFACLSGDHFYAHMDKIAAAESIFGERVVHGYFLISAAAGLFVDAGVGPVIANYGMENLRFIEPVKPGDTIQVRL 628
                      7778888.99************************************************************************************ PP

                      EEEEEEEEEEEEEEEEEEEEE CS
  MaoC_dehydratas 100 evvgkrdvrktkkvevtkevt 120
                      +++ k+ + + +  e+ ++v 
       CTQ27811.1 629 TCKRKTVKHQRSADEKATGVV 649
                      ****99999887777766665 PP

>> MaoC_dehydrat_N  N-terminal half of MaoC dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.4e-05       0.2      11     130 ..     544     664 ..     530     665 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.4e-05
  MaoC_dehydrat_N  11 kaevereavrefakavgetnpayldeeaaraagyrsliaPptflivlatkapellealgidlsrllhgeqefeyhepiraGDeltt..esriad 102
                      + ++++ ++  fa   g+   a++d+ aa+++ +++ ++   fli +a      + + g+       g +++++ ep+++GD++++  +++ + 
       CTQ27811.1 544 RRTLTEADIVNFACLSGDHFYAHMDKIAAAESIFGERVVHGYFLISAAAGL---FVDAGVGPVIANYGMENLRFIEPVKPGDTIQVrlTCKRKT 634
                      5678899999****************************9999999888766...6666665444446899************976522688889 PP

  MaoC_dehydrat_N 103 vydkkg..vGalefivvettvtnqrGepva 130
                      v+++ +    a+ +++   ++ nq+++ va
       CTQ27811.1 635 VKHQRSadEKATGVVEWAVEIFNQHQQAVA 664
                      99988888889999999*********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4795.66
//
Query:       CTQ27812.1  [L=309]
Description: putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-98  329.3   0.8    1.5e-98  329.1   0.8    1.0  1  PaaA_PaaC  Phenylacetic acid catabolic protein


Domain annotation for each model (and alignments):
>> PaaA_PaaC  Phenylacetic acid catabolic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.1   0.8  8.4e-103   1.5e-98       2     261 .]      17     291 ..       1     291 [. 0.98

  Alignments for each domain:
  == domain 1  score: 329.1 bits;  conditional E-value: 8.4e-103
                 ............HHHHHHHHHHHHHHHHHHHHHHTTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS.-HHHHHHC--CCC----CGGGS-- CS
   PaaA_PaaC   2 ieakdwmpeeyrkalirlllqlAdselilaqresewigrAPsLeediallnivlDelGharllysaaeelegkgkdeddlaflrdegefknsllvelpn 100
                 ie++dwmp++yrk+lir++ q+A+se++++++e++wi+rAP+L+++++ll++v+De+Gh+++lysaae+l   g  ++dl++++ +g++k+s+++++p+
  CTQ27812.1  17 IEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETL---GCAREDLYQKMLDGQMKYSSIFNYPT 112
                 79********************************************************************...999*********************** PP

                 -SHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHGGGGGGGG---HHH.....HHHHH CS
   PaaA_PaaC 101 gdwadtivrqflvdaaaiilleaLkrssygplaaiaakvlkEesyHlrhgeewvlrLgdGteeskrrvqeAlnrlwpyvlelfgpddae.....ealae 194
                  +wad++v+++lvd+aai+++ aL+r+sygp+a++++k++kEes+H+r+g e +++L++G e++++++q+A+nr+w+++l++fgp+d++     +++a+
  CTQ27812.1 113 LSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAQRQMLQDAINRFWWPALMMFGPNDDNspnsaRSMAW 211
                 *************************************************************************************************** PP

                 TTSS--GGGGHHHHHHHHHHHHHHTT-----S------GGGT---TTHHHH................HHHHHHHHHHSTT--- CS
   PaaA_PaaC 195 kgkavdndeLrqkfeakvvpvleeagltlPdepalkeggkqGehsehlgel................laelqalqrahpeaaW 261
                 k+k ++ndeLrq+f++++vp++e +g+t+Pd p+l+ ++++G++ +  ge+                 ++l+a ++a++e++W
  CTQ27812.1 212 KIKLHSNDELRQRFVDNTVPQVEILGMTVPD-PDLQFDEASGHYRF--GEIdwqefnevisgrgicnHERLAAKRKAWEEGEW 291
                 ******************************9.************99..*********************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2329.35
//
Query:       CTQ27813.1  [L=100]
Description: putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-39  134.4   0.1    1.4e-39  134.2   0.1    1.1  1  PaaB      Phenylacetic acid degradation B


Domain annotation for each model (and alignments):
>> PaaB  Phenylacetic acid degradation B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.1   7.9e-44   1.4e-39       2      87 ..      11      96 ..      10      98 .. 0.98

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 7.9e-44
        PaaB  2 wplfEVfkrdkeglshqhvgSvhAadaemALlvArdvfvRReeavslwvvkseailastpeekeslfapakektYrhqtyYgvvee 87
                wpl+EVf+r+k+glsh+hvgS+hAad++mAL++Ard ++RR+e++s+wvvk+++i+as+pe+++++f+pa++k+Yrh+t+Y+v++ 
  CTQ27813.1 11 WPLYEVFVRSKQGLSHRHVGSLHAADDQMALENARDAYTRRSEGCSIWVVKASEIVASQPEDRGEFFDPAESKVYRHPTFYTVPDG 96
                **********************************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 805.30
//
Query:       CTQ27814.1  [L=251]
Description: putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-95  317.7   0.0    5.2e-95  317.5   0.0    1.0  1  PaaA_PaaC     Phenylacetic acid catabolic protein
  ------ inclusion threshold ------
      0.047   13.6   0.0      0.075   13.0   0.0    1.4  1  DUF2399       Protein of unknown function C-terminus (DUF2399
       0.05   13.9   0.2       0.13   12.6   0.2    1.7  1  PG_binding_3  Predicted Peptidoglycan domain


Domain annotation for each model (and alignments):
>> PaaA_PaaC  Phenylacetic acid catabolic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.5   0.0   8.7e-99   5.2e-95      14     261 .]       5     251 .]       1     251 [] 0.99

  Alignments for each domain:
  == domain 1  score: 317.5 bits;  conditional E-value: 8.7e-99
                 HHHHHHHHHHHHHHHHHHHHHHTTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS.-HHHHHHC--CCC----CGGGS---SHHHHHHHHHH CS
   PaaA_PaaC  14 kalirlllqlAdselilaqresewigrAPsLeediallnivlDelGharllysaaeelegkgkdeddlaflrdegefknsllvelpngdwadtivrqfl 112
                 + ++++ l+l+d+ l+laqr++ w+g+AP+Le d+al+ni+lD+lG+ar ++s+a+el+g g ded+laf rde++f n+llve+png++adti+rqf+
  CTQ27814.1   5 NPVATYALRLGDNGLVLAQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELNGCG-DEDTLAFGRDERRFSNLLLVEQPNGNFADTIARQFF 102
                 567899******************************************************99.************************************ PP

                 HHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHGGGGGGGG---HHHHHHHHTTSS--GGGGHHHHHHH CS
   PaaA_PaaC 113 vdaaaiilleaLkrssygplaaiaakvlkEesyHlrhgeewvlrLgdGteeskrrvqeAlnrlwpyvlelfgpddaeealaekgkavdndeLrqkfeak 211
                 +d ++++l+++L +s++++laaiaak lkE++yH+r ++ w+ rLg+Gte s+r++q+A+++lw++++elf +d+ e +l e+g+avd++eL+++++++
  CTQ27814.1 103 IDVWHVALFSRLVNSRDAQLAAIAAKGLKEVRYHQRFSRGWLERLGNGTELSNRKMQQAVDNLWRFTGELFLADEVELSLVEQGIAVDPRELQAEWQSA 201
                 *************************************************************************************************** PP

                 HHHHHHHTT-----S------GGGT---TTHHHHHHHHHHHHHHSTT--- CS
   PaaA_PaaC 212 vvpvleeagltlPdepalkeggkqGehsehlgellaelqalqrahpeaaW 261
                 v+  l + gl++P+e a+++ggkqG hsehlg+llae+q+lqr+hp+ +W
  CTQ27814.1 202 VHTALLDSGLQIPQEAAFRSGGKQGLHSEHLGPLLAEMQYLQRSHPGLQW 251
                 ************************************************** PP

>> DUF2399  Protein of unknown function C-terminus (DUF2399)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.2e-05     0.075      79     144 ..     149     218 ..      90     221 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
     DUF2399  79 pGlaianklaerfgarpwRmdaadY...aaalaavaaa.klvgrrldaewddelaeamaelgvaiyeEav 144
                 +G ++ n+ +++   + wR++ + +   + +l+ v++  +++ r+l+aew  ++  a+ ++g++i +Ea 
  CTQ27814.1 149 NGTELSNRKMQQAVDNLWRFTGELFladEVELSLVEQGiAVDPRELQAEWQSAVHTALLDSGLQIPQEAA 218
                 46667777777777788********8754455555543155667788*********************86 PP

>> PG_binding_3  Predicted Peptidoglycan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   2.1e-05      0.13      41      75 ..     109     147 ..     106     148 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
                   HHHHHHHHHHHHHHHHHHHHHH....STHHHHHHHHHHH CS
  PG_binding_3  41 aLlkainlarrefyldlaerri....tnerflrGWvkrl 75 
                   aL+ ++ ++r + ++ +a++       ++rf rGW++rl
    CTQ27814.1 109 ALFSRLVNSRDAQLAAIAAKGLkevrYHQRFSRGWLERL 147
                   799****************9998888899*******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2034.00
//
Query:       CTQ27815.1  [L=165]
Description: putative multicomponent oxygenase/reductase subunit for phenylacetic acid degradation [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-07   31.9   0.0    3.3e-07   30.4   0.0    1.7  2  FeS_assembly_P  Iron-sulfur cluster assembly protein
     0.0051   16.8   5.3      0.015   15.3   5.5    1.7  1  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
  ------ inclusion threshold ------
      0.011   15.6   4.2       0.62   10.0   0.1    2.4  2  zf-HIT          HIT zinc finger
      0.085   12.8   2.9       0.19   11.7   2.9    1.6  1  Zn_ribbon_SprT  SprT-like zinc ribbon domain
      0.088   12.2   2.0       0.26   10.8   0.1    2.4  2  zf-ribbon_3     zinc-ribbon domain
       0.19   11.9   9.3       0.86    9.8   0.7    2.7  2  Zn-ribbon_8     Zinc ribbon domain
       0.67   10.0   5.3          4    7.5   4.9    2.0  1  zinc-ribbons_6  zinc-ribbons
          2    8.2  11.0       0.82    9.5   7.3    2.3  2  Zn_Tnp_IS1      InsA N-terminal domain
        4.8    7.4   6.7         15    5.8   4.6    2.5  1  zf-Dof          Dof domain, zinc finger


Domain annotation for each model (and alignments):
>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   1.7e-10   3.3e-07       3      59 ..      14      71 ..      13      76 .. 0.93
   2 ?   -2.0   0.0       2.1   4.2e+03      36      62 ..      81     105 ..      79     107 .. 0.63

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.7e-10
                    HHHHHHTT-B-TTTS.SBCCCCT---EEEE-T-EEEEEE--SSTT-TTHHHHHHHHHH CS
  FeS_assembly_P  3 avlaaLrtVtDPelg.vdlvslglvreidieggkVsvditltypacslaeairadaea 59
                    +++  L+ + DPe + +++++lg+vr+++  g+   + +t+ty +c++ e +  +++ 
      CTQ27815.1 14 TIWGLLSAIPDPEVPvLTITDLGMVRSVARHGDGWVIGFTPTYSGCPATEHLLGEIRT 71
                    6999*********************************************999988876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.1
                     EEEEE--SSTT-TTHHHHHHHHHHHHC CS
  FeS_assembly_P  36 Vsvditltypacslaeairadaeaalr 62 
                     V++ ++l+ p     + + +da++ lr
      CTQ27815.1  81 VHIVLQLDPPW--TTDWMSQDARERLR 105
                     66666666332..34777788888777 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   5.5   7.5e-06     0.015      17      45 ..     123     157 ..     115     158 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.5e-06
  Zn_Tnp_IS1595  17 ngfvCPhCgsrkayrikt......rglfqCkeCrk 45 
                    + + CP+Cgs++   i+         l++C +Cr+
     CTQ27815.1 123 AEVSCPRCGSTHTSLISEfgstacKALYRCDSCRE 157
                    5678*********99*99999**9*********95 PP

>> zf-HIT  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00031      0.62       7      20 ..     116     131 ..     114     137 .. 0.90
   2 ?    6.1   1.2    0.0052        10      11      22 ..     147     158 ..     142     161 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00031
                 TT-S..B-SEE-TTT- CS
      zf-HIT   7 vCgf..pakYkCpkCn 20 
                  C++  pa  +Cp+C+
  CTQ27815.1 116 ACHAdmPAEVSCPRCG 131
                 599999*********8 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0052
                 B-SEE-TTT--E CS
      zf-HIT  11 pakYkCpkCntr 22 
                 +a Y+C  C+++
  CTQ27815.1 147 KALYRCDSCREP 158
                 577******998 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   2.9   9.5e-05      0.19       6      36 ..     126     161 ..     126     163 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.5e-05
  Zn_ribbon_SprT   6 rCtgCgreythhlsi.rrhn......YrCrrCkgtLrg 36 
                     +C++Cg  +th++ i    +      YrC  C++ + +
      CTQ27815.1 126 SCPRCG--STHTSLIsEFGStackalYRCDSCREPFDY 161
                     6*****..8******99999*************98866 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00013      0.26       2      11 ..     124     134 ..     123     137 .. 0.83
   2 ?    0.2   0.2      0.28   5.6e+02       3       8 ..     150     155 ..     148     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
  zf-ribbon_3   2 tvrCPnCGa.p 11 
                  +v+CP+CG+ +
   CTQ27815.1 124 EVSCPRCGStH 134
                  79******977 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.28
  zf-ribbon_3   3 vrCPnC 8  
                  +rC +C
   CTQ27815.1 150 YRCDSC 155
                  799999 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.7   0.00043      0.86      23      35 ..     120     134 ..     110     138 .. 0.72
   2 ?    5.7   2.3     0.008        16       6      17 ..     150     161 ..     149     164 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00043
  Zn-ribbon_8  23 daplta.CPeCgs.e 35 
                  d p ++ CP+Cgs +
   CTQ27815.1 120 DMPAEVsCPRCGStH 134
                  5566666*****944 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.008
  Zn-ribbon_8   6 YrCeeCghefev 17 
                  YrC++C + f+ 
   CTQ27815.1 150 YRCDSCREPFDY 161
                  9*********85 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.9     0.002         4      20      57 ..     115     157 ..     100     158 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.002
                     TTT--EEEEEEE-SSS-S---EE......EETTEEEE--TTTT- CS
  zinc-ribbons_6  20 eaCqedlkkealCpeCeqelevl......kaCgavdyfCnkcne 57 
                     +aC++d+  e  Cp+C++    l       aC a  y C++c+e
      CTQ27815.1 115 HACHADMPAEVSCPRCGSTHTSLisefgsTACKA-LYRCDSCRE 157
                     69**************987655433334356766.899999975 PP

>> Zn_Tnp_IS1  InsA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.9   3.8e+03      16      20 ..      41      45 ..      39      46 .. 0.68
   2 ?    9.5   7.3   0.00041      0.82       5      35 .]     124     156 ..     122     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.9
  Zn_Tnp_IS1 16 VyRhG 20
                V RhG
  CTQ27815.1 41 VARHG 45
                67887 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00041
  Zn_Tnp_IS1   5 sihCPrCsstd..VyRhGkstagHeRfrCrdCk 35 
                  ++CPrC st    + +  sta    +rC +C+
  CTQ27815.1 124 EVSCPRCGSTHtsLISEFGSTACKALYRCDSCR 156
                 59*******9988888888*************8 PP

>> zf-Dof  Dof domain, zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   4.6    0.0077        15       3      35 ..     124     156 ..     122     160 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0077
      zf-Dof   3 alkCprCestntkFcYyNNyslsqPRyfCkaCr 35 
                 +++CprC st+t           +  y C +Cr
  CTQ27815.1 124 EVSCPRCGSTHTSLISEFGSTACKALYRCDSCR 156
                 578*********987766666777778888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1350.41
//
Query:       CTQ27816.1  [L=356]
Description: subunit of the phenylacetly-CoA oxygenase/reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-18   66.1   0.0      6e-18   65.5   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    1.1e-15   57.4   0.6    1.9e-15   56.6   0.6    1.4  1  Fer2           2Fe-2S iron-sulfur cluster binding domain
    5.7e-12   45.9   0.0    9.3e-12   45.2   0.0    1.4  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    0.00018   21.7   0.0     0.0016   18.6   0.0    2.0  2  NAD_binding_6  Ferric reductase NAD binding domain
  ------ inclusion threshold ------
      0.077   13.8   0.0       0.14   12.9   0.0    1.4  1  DUF4512        Domain of unknown function (DUF4512)


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   1.7e-21     6e-18       2     107 ..     118     225 ..     117     227 .. 0.96

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 1.7e-21
                    EEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH...HSSTTEE CS
  NAD_binding_1   2 iagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells...lkkeeth 94 
                    ia+G+Gi+P+++++ a l+  +++ + +l+yGnr+++++++r+ l  l+ ++p+rl+v++  s+e+ +++  +gr++ + l++l++   + +  + 
     CTQ27816.1 118 IAAGSGITPMMAIISATLAT-EPQSRFTLIYGNRSSHSMMFRQALADLKDRYPQRLQVIHLFSQESMDSDLLQGRIDGDKLRQLADhllDFSRFDE 212
                    9******************8.999**********************************************************99999886789999 PP

                    EEEECSHHHHHHH CS
  NAD_binding_1  95 vyvCGppgMikav 107
                    +++CGp +M++ +
     CTQ27816.1 213 AFICGPAAMMDEA 225
                    **********876 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.6   5.2e-19   1.9e-15       5      78 .]     270     342 ..     266     342 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 5.2e-19
                 TEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE.CTTSSSSTHHHHHTTEEEEGGGSEES CS
        Fer2   5 gkevevevadgettlldaaeenggidipysCggggCgtClvevlegev.qsdetelegeeldegklrlaCqtivt 78 
                 g+++ +   +++ ++ldaa ++ g d+p++C+gg C+tC+++vl gev  + +  le +el++g++ l+Cq+++t
  CTQ27816.1 270 GRDRLIALSAEDDSILDAALRQ-GADLPFACKGGVCATCKCKVLRGEVaMAANYSLEADELAAGYV-LSCQSLPT 342
                 55444444445555******99.*************************8666899******99998.****9986 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   2.6e-15   9.3e-12       2      99 .]       7     105 ..       6     105 .. 0.91

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 2.6e-15
                    EEEEEEEECCTTEEEEEEEESTTTS.-----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHC.S-TT-EEEEEEEE- CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekq.klglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvypgGkmsqaLde.lkigdtleikGPlG 95 
                    lk++++e  ++d  +++f++p++ q +  +++Gqh+ l+++  ge+  R Y+ i ++ + Ge+ + vk + gG++s + ++ ++ g+ le+  P+G
     CTQ27816.1   7 LKVARVEPETRDAVTITFAIPQALQaEYCFRPGQHLTLKARLGGEELRRCYS-ICHSRTPGEISVAVKAIDGGRFSRYAQHdIQQGMELEVMVPQG 101
                    5788889999**********9986526899**********************.7888899*******************555************** PP

                    SEEC CS
  FAD_binding_6  96 kfeY 99 
                    +f Y
     CTQ27816.1 102 HFGY 105
                    **87 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.5e-07    0.0016       5      80 ..     116     184 ..     114     209 .. 0.82
   2 ?    0.8   0.0      0.13   4.7e+02     140     152 ..     214     226 ..     212     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4.5e-07
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   5 llvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTseyea 80 
                    l +a+G+Gitp++ i+  +l+++      + + +li  +r+s+s+ +f++ L  l+++ ++ ++++   +++e+  
     CTQ27816.1 116 LAIAAGSGITPMMAIISATLATEP-----QSRFTLIYGNRSSHSM-MFRQALADLKDRYPQ-RLQVIHLFSQESMD 184
                    569********************8.....99*********99887.899999999999999.66665555555544 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.13
                    xxxxxxxxxxxxx RF
  NAD_binding_6 140 fvCGppklvkevk 152
                    f+CGp+++++e +
     CTQ27816.1 214 FICGPAAMMDEAE 226
                    89*******9975 PP

>> DUF4512  Domain of unknown function (DUF4512)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.9e-05      0.14      39      58 ..     288     307 ..     279     334 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.9e-05
     DUF4512  39 vikagpefPfeckGGvcPfv 58 
                 ++++g++ Pf ckGGvc   
  CTQ27816.1 288 ALRQGADLPFACKGGVCATC 307
                 6899*************874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2943.27
//
Query:       CTQ27817.1  [L=255]
Description: enoyl-CoA hydratase-isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.2e-71  238.6   0.0    6.9e-71  238.5   0.0    1.0  1  ECH_1        Enoyl-CoA hydratase/isomerase
    2.5e-36  125.9   1.2    4.7e-29  101.9   0.1    2.1  2  ECH_2        Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
      0.059   13.3   0.3       0.13   12.1   0.3    1.7  1  Phage-MuB_C  Mu B transposition protein, C terminal


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.5   0.0   1.2e-74   6.9e-71       4     250 ..      10     254 ..       7     255 .] 0.98

  Alignments for each domain:
  == domain 1  score: 238.5 bits;  conditional E-value: 1.2e-74
                 TTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHCHHHHHHHCCHHHHHHHHHHSSSEEEEEE-SEEETH CS
       ECH_1   4 agvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeekakqallkeevlelwtklytvpkpviaavnGaaigG 102
                   v++++lnrP+a Nal+++llt +++ale +  d sv++ v+ G  ++FaaGadl+emae+     a+l      lw ++    kp+ia vnG+a+g+
  CTQ27817.1  10 GRVLQLTLNRPQARNALNNALLTQIAEALEAAAVDDSVGVCVIRGNARFFAAGADLNEMAEK--DLPATLDDIRPRLWGRIDAFTKPLIASVNGYALGA 106
                 5699*********************************************************7..788999999999*********************** PP

                 HHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCHHHHHHH CS
       ECH_1 103 GlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaeklaekspaalrql 201
                 G+elal cD+++a+dna+fgl+e+ lG++pgaggtq+l+r vGk++A +++l g++i a  a+++Glv+ + p++   e+al+la+ +a++sp+alr++
  CTQ27817.1 107 GCELALLCDLIVAGDNARFGLPEITLGIMPGAGGTQRLIRSVGKALASRMVLSGESIDARQAQQAGLVSDIHPAALTDEYALQLATTIARHSPLALRAA 205
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH----- CS
       ECH_1 202 kealnakledalaeqleaeaklfestfskddikeGlqaflEkrkpefed 250
                 k++l+ + e  l+++l++e++lf+ + +++d++eG++afl kr pef++
  CTQ27817.1 206 KQSLRLAQEVSLQAGLQQERQLFSLLSATEDRREGIDAFLQKRTPEFKG 254
                 ***********************************************97 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.1   7.8e-33   4.7e-29       3     175 ..      14     181 ..      12     186 .. 0.93
   2 !   23.7   0.1     5e-09     3e-05     245     316 ..     183     251 ..     177     254 .. 0.90

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 7.8e-33
                 EEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEETH CS
       ECH_2   3 vitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivmGg 101
                  +tLnrp+a NaL+ +++++++eal++ + dd+v + v++g+  + f AG D+++++e+    + +         +l  +i  ++kp++a ++G+++G 
  CTQ27817.1  14 QLTLNRPQARNALNNALLTQIAEALEAAAVDDSVGVCVIRGNA-RFFAAGADLNEMAEKDLPATLD-----DIRPRLWGRIDAFTKPLIASVNGYALGA 106
                 58***************************************76.*************999997655.....567799********************** PP

                 HHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GG CS
       ECH_2 102 GvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpse 175
                 G+ l++ + + v+ ++++f  PE+++G++P  Gg+  L r  g +l+  + l+G+++++++a +agl + + p++
  CTQ27817.1 107 GCELALLCDLIVAGDNARFGLPEITLGIMPGAGGTQRLIRSVGkALASRMVLSGESIDARQAQQAGLVSDIHPAA 181
                 **************************************99755499*********************99887765 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 5e-09
                 -SHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTTS------ CS
       ECH_2 245 edewakktletlkkrsPtslkvtleqlrrgrklsslaevlrmElrlalrllaekDfveGvrallvdkdkkPk 316
                 +de a + ++t++++sP++l+++ ++lr +++ s l+  l++E +l + l a++D  eG+ a l ++  +P+
  CTQ27817.1 183 TDEYALQLATTIARHSPLALRAAKQSLRLAQEVS-LQAGLQQERQLFSLLSATEDRREGIDAFLQKR--TPE 251
                 57889999*************************5.***************************99654..455 PP

>> Phage-MuB_C  Mu B transposition protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   2.2e-05      0.13      25      64 ..     181     221 ..     159     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.2e-05
                  SSSSSHHHHHHHTTSSS.-S-HHHHHHHHGGGT-TT-TTS- CS
  Phage-MuB_C  25 gltdeelmkllqeiaek.pGaLRaltktLrlAamfAkgege 64 
                   ltde +++l   ia+  p aLRa +++LrlA  +   +g 
   CTQ27817.1 181 ALTDEYALQLATTIARHsPLALRAAKQSLRLAQEVSLQAGL 221
                  689************85389************877655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1976.20
//
Query:       CTQ27818.1  [L=262]
Description: acyl-CoA hydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-60  204.5   0.0    1.8e-60  204.4   0.0    1.0  1  ECH_1     Enoyl-CoA hydratase/isomerase
    1.2e-36  126.9   0.0    1.2e-34  120.3   0.0    2.0  2  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.4   0.0     2e-64   1.8e-60       3     250 ..      10     261 ..       8     262 .] 0.95

  Alignments for each domain:
  == domain 1  score: 204.4 bits;  conditional E-value: 2e-64
                 ETTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHC....HHHHHHHCCHHHHHHHHHHSSSEEEEEE-S CS
       ECH_1   3 eagvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeek....akqallkeevlelwtklytvpkpviaavnG 97 
                 e+gv+ i+lnrP+ +N++++ + + l++ l+++e d  vr   +tG ++ F+aG+dl+++             +++  ++ l ++l  +pkpvi avnG
  CTQ27818.1  10 EQGVMTITLNRPDRLNSFNDLMHHQLAECLKQAERDDGVRCLLITGAGRGFCAGQDLNDRNVDPSgpppDLGMSVERFYNPLVRRLAALPKPVICAVNG 108
                 79********************************************************99876543343444455556678999*************** PP

                 EEETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCHH CS
       ECH_1  98 aaigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaeklaekspa 196
                  a+g+G+ lal cDiv aa++a+f  +++klGl+p+ gg+++l+r  G+++A+ ++llg+++sa+ a+++G++++ v + +l ++ l+la++la ++  
  CTQ27818.1 109 VAAGAGATLALGCDIVLAARSAKFVMAFSKLGLVPDCGGSWFLPRVAGRARAMGLALLGDSLSAEQAAQWGIIWQLVDDSELADTSLQLARHLAAQPTF 207
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH----- CS
       ECH_1 197 alrqlkealnakledalaeqleaeaklfestfskddikeGlqaflEkrkpefed 250
                  l  +k+al a  ++ l +ql++e++ +     +dd +eG+ afl kr+p+f +
  CTQ27818.1 208 GLGLIKKALLASETNSLDAQLDLERDYQRLAGRSDDYREGVSAFLAKRPPQFSG 261
                 ****************************************************87 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0   1.4e-38   1.2e-34       2     186 ..      14     199 ..      13     206 .. 0.91
   2 !    5.7   0.0     0.001         9     255     316 ..     200     258 ..     193     262 .] 0.79

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 1.4e-38
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHH.HHHHHHC-SS-EEEEE-BEEE CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYk.lnyliatypkpvvalmdGivm 99 
                  +itLnrp+ lN+ +  m ++l+e+lk+ e+dd v++++++gag ++fCAG D++    + +    +    +++ Y+ l  ++a +pkpv++ ++G++ 
  CTQ27818.1  14 MTITLNRPDRLNSFNDLMHHQLAECLKQAERDDGVRCLLITGAG-RGFCAGQDLNDRNVDPSGPPPDLGMSVERFYNpLVRRLAALPKPVICAVNGVAA 111
                 68****************************************99.*********99777766665554456666665599******************* PP

                 THHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHT CS
       ECH_2 100 GgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklealeeaLae 186
                 G G+ l++++ +  +  +++f m   ++Gl+PD+Ggs+fL+r+ g + ++ lal G++l++++a + g+  ++v++++l++   +La+
  CTQ27818.1 112 GAGATLALGCDIVLAARSAKFVMAFSKLGLVPDCGGSWFLPRVAGrARAMGLALLGDSLSAEQAAQWGIIWQLVDDSELADTSLQLAR 199
                 *******************************************99466999****************************998888876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.001
                 HHHHS-HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTTS------ CS
       ECH_2 255 tlkkrsPtslkvtleqlrrgrklsslaevlrmElrlalrllaekDfveGvrallvdkdkkPk 316
                  l+++  + l ++ ++l  +++  sl+  l+ E +  + + +++D  eGv a l ++   P+
  CTQ27818.1 200 HLAAQPTFGLGLIKKALLASETN-SLDAQLDLERDYQRLAGRSDDYREGVSAFLAKR--PPQ 258
                 55666666677777777777777.6***********9999999*********99876..455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2027.17
//
Query:       CTQ27819.1  [L=473]
Description: 3-hydroxybutyryl-CoA dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-65  218.0   0.5    5.7e-64  215.3   0.1    2.0  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
    6.5e-48  161.3   0.0    5.8e-28   97.3   0.0    2.5  2  3HCDH           3-hydroxyacyl-CoA dehydrogenase, C-terminal d
    5.2e-13   49.2   0.4    5.2e-13   49.2   0.4    2.7  3  3HCDH_RFF       3-hydroxybutyryl-CoA dehydrogenase reduced Ro
    6.1e-06   26.5   0.3    3.2e-05   24.1   0.2    2.2  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    0.00094   19.2   0.5     0.0027   17.7   0.5    2.0  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
  ------ inclusion threshold ------
      0.012   15.2   0.4      0.026   14.1   0.4    1.5  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
      0.018   15.6   1.4      0.018   15.6   1.4    2.2  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
      0.035   13.4   2.8      0.037   13.3   1.2    1.8  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
       0.06   13.6   0.5       0.06   13.6   0.5    2.7  3  TrkA_N          TrkA-N domain
      0.081   12.9   0.1       0.16   11.9   0.1    1.5  1  MORN            MORN repeat
       0.12   11.8   0.4       0.29   10.5   0.2    1.6  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
       0.23   12.0   0.5       0.54   10.9   0.5    1.6  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.3   0.1   3.8e-67   5.7e-64       1     178 [.       7     184 ..       7     186 .. 0.99
   2 ?    0.8   0.0      0.27     4e+02     151     179 ..     354     382 ..     338     383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 215.3 bits;  conditional E-value: 3.8e-67
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfae 99 
                 +vaviG+GtmGagia+v+a+ag++V+++di+++a++ a e i+ +l++ v++gkl  e+++a+lar++++ dl++++dadlviEa+ E+le+K+++fa+
  CTQ27819.1   7 NVAVIGSGTMGAGIAEVAAAAGHPVRIFDINPKAVDLAIEGIAGRLASRVARGKLASEQADALLARLHPAHDLAALADADLVIEAASERLEVKTALFAQ 105
                 69************************************************************************************************* PP

                 HHCCS-TTSEEEE--SSS-HHHHCCCSSSGGGEEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT-EEEEEC CS
     3HCDH_N 100 lekiakpdailasnTSslsiselaealkrperviglHFfnPpplmkLvEvvrgekTseetvatvvelakkigktpvvvk 178
                 l++i+ p+++l+snTSs+si+++a+ +k+perv+glHFfnP+p+mkLvEvv+g +Ts e+v+++++ +  +gk+pv+++
  CTQ27819.1 106 LAAICAPSTLLTSNTSSISITAIAAGVKNPERVAGLHFFNPAPVMKLVEVVSGLATSTEVVEQLCQCVSGWGKQPVRCR 184
                 *****************************************************************************97 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.27
                 E-TT--HHHHHHHHHHHHHTT-EEEEECS CS
     3HCDH_N 151 rgekTseetvatvvelakkigktpvvvkd 179
                 ++++ ++++++++v+++++ gk++ ++ d
  CTQ27819.1 354 AAATNAPAATDKAVHYFQQQGKKVLRIAD 382
                 455667999**************999876 PP

>> 3HCDH  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   3.9e-31   5.8e-28       1      97 []     188     285 ..     188     285 .. 0.97
   2 !   61.4   0.0   6.3e-20   9.4e-17       3      82 ..     387     466 ..     385     472 .. 0.94

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 3.9e-31
                 TTTHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH.HHHHHTTTHGGHH-HHHHHHHHTT--BGGGTBSSSBC CS
       3HCDH   1 GFvvnRvlapllneavrlveegvaspediDaamrlglGlpmGpfelldlvgldvakkile.vlaeelgerayapsplleklveagrlgrktgkgfyky 97 
                 GF+vnRv+ p++ ea+r++ee+va pe iDaa+r+g G+pmGp++l+dl+g dv+ +++  v+++  ++r+y ps l ++l+ agrlg+k+g g+y++
  CTQ27819.1 188 GFIVNRVARPFYAEAWRALEEQVAAPEVIDAALRDGGGFPMGPLALTDLIGQDVNFAVTCsVFNAFWQDRRYLPSLLQQELALAGRLGKKSGHGVYRW 285
                 9***********************************************************7888888999**************************87 PP

  == domain 2  score: 61.4 bits;  conditional E-value: 6.3e-20
                 THHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHTTTHGGHH-HHHHHHHH CS
       3HCDH   3 vvnRvlapllneavrlveegvaspediDaamrlglGlpmGpfelldlvgldvakkilevlaeelgerayapsplleklve 82 
                  v R++a l+nea+++v++gvasp+diD+amrlg+++p Gp+++ + +g   +++ le l+  +ge++y+ps ll++ + 
  CTQ27819.1 387 LVWRTVAMLINEALDAVQKGVASPQDIDTAMRLGVNYPHGPLAWGERLGWRRVLQLLENLQHHYGEERYRPSSLLRQKAL 466
                 5779***********************************************************************99865 PP

>> 3HCDH_RFF  3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2       2.8   4.2e+03       3       3 ..      56      56 ..      17      85 .. 0.60
   2 ?   -2.5   0.0       4.7   7.1e+03      43      66 ..     161     184 ..     156     187 .. 0.77
   3 !   49.2   0.4   3.5e-16   5.2e-13       4      69 .]     323     384 ..     320     384 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.8
   3HCDH_RFF  3 l 3 
                +
  CTQ27819.1 56 V 56
                1 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.7
   3HCDH_RFF  43 aspqalaqavalLqalGkkvlvla 66 
                 +s + ++q++++    Gk++++ +
  CTQ27819.1 161 TSTEVVEQLCQCVSGWGKQPVRCR 184
                 567788999999999999988755 PP

  == domain 3  score: 49.2 bits;  conditional E-value: 3.5e-16
   3HCDH_RFF   4 TdGrtAtqraaeegrpvvlfDlaldyraatrlAlAaaaqaspqalaqavalLqalGkkvlvlaDaP 69 
                 T G+tA  ++ ++ rpvv+ Dl++    ++ ++lAaaa++ p+a+++av+++q++Gkkvl++aD+P
  CTQ27819.1 323 TEGETALALSIKHHRPVVVYDLCA----SDTVVLAAAATNAPAATDKAVHYFQQQGKKVLRIADYP 384
                 9********************997....578**********************************9 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.2   2.2e-08   3.2e-05       1      43 [.       7      70 ..       7     144 .. 0.66
   2 ?   -0.6   0.0      0.92   1.4e+03      20     104 ..     334     370 ..     270     384 .. 0.58

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 2.2e-08
                   EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.....................E CS
  NAD_binding_2  1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.....................a 43
                   ++++iG G+MG+ +a+  ++ag+ v +++ ++++v+ +++                       +
     CTQ27819.1  7 NVAVIGSGTMGAGIAEVAAAAGHPVRIFDINPKAVDLAIEGIagrlasrvargklaseqadalL 70
                   689********************************99997655566444444444444444431 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.92
                    HTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE-S---HHHHHHHHHHH CS
  NAD_binding_2  20 kagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdeviegllealkkgdilidgstsspedtrelakel 104
                    k+   v+vy++ ++ +  l+a+                                                 t +p++t +  ++ 
     CTQ27819.1 334 KHHRPVVVYDLCASDTVVLAAAA------------------------------------------------TNAPAATDKAVHYF 370
                    33344444444444444444333................................................33344444444444 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.5   1.8e-06    0.0027       1      36 [.       7      42 ..       7     178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.8e-06
                    -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHH CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaenghevrlwvreeelie 36
                    ++av+G+G  G  +A v a +gh+vr++  +++ ++
      CTQ27819.1  7 NVAVIGSGTMGAGIAEVAAAAGHPVRIFDINPKAVD 42
                    59***************************9997654 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   1.7e-05     0.026       2      38 ..       7      43 ..       6      49 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
                    EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHH CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvDideekvdk 38
                    +++viG+G +G+  a v a++gh v + Di+ ++vd 
      CTQ27819.1  7 NVAVIGSGTMGAGIAEVAAAAGHPVRIFDINPKAVDL 43
                    79********************************986 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   1.4   1.2e-05     0.018       2      54 ..       8      57 ..       7      92 .. 0.67
   2 ?   -1.9   0.1       3.5   5.2e+03      60      81 ..     346     366 ..     328     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.-EEECEC CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.vkvtavd 54
                   +++iG+G mg+++a+ ++aag   h +++  + np+ ++ + e +  + ++ v+
     CTQ27819.1  8 VAVIGSGTMGAGIAEVAAAAG---HPVRIF-DINPKAVDLAIEGIAgRLASRVA 57
                   89*******************...999966.88888765444333324444444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.5
                    HH-SEEEE-S-HHHHHHHHHHC CS
  F420_oxidored  60 eeadvvvlavkpedveevlsel 81 
                    + +d vvla   ++++++ +++
     CTQ27819.1 346 A-SDTVVLAAAATNAPAATDKA 366
                    4.78888888888887776665 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.2   2.4e-05     0.037      30      78 ..       7      67 ..       2      94 .. 0.69
   2 ?   -2.3   0.0       1.5   2.2e+03      37      48 ..     406     417 ..     355     422 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEE............H CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvev............l 78
                 +v viG G+ G   +++a++ g  V+++D++p++     + + ++ +               
   CTQ27819.1  7 NVAVIGSGTMGAGIAEVAAAAGHPVRIFDINPKAVDLAIEgIAGR-LASrvargklaseqaD 67
                 799*****************************9876554446665.4443455555544440 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.5
                  SHHHHHHHHHHH CS
  AlaDh_PNT_C  37 GvaGlqAiatak 48 
                  Gva  q i ta+
   CTQ27819.1 406 GVASPQDIDTAM 417
                  455555555555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.5     4e-05      0.06       1      47 [.       8      50 ..       8     108 .. 0.80
   2 ?   -3.5   0.0       8.4   1.3e+04      41      57 ..     152     168 ..     150     169 .. 0.82
   3 ?   -1.4   0.1       1.8   2.7e+03      23      60 ..     317     356 ..     306     363 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4e-05
                EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES CS
      TrkA_N  1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvg 47
                +++iG G++G  +ae   + g+ +v + d ++++v+ +     e + g
  CTQ27819.1  8 VAVIGSGTMGAGIAEVAAAaGH-PVRIFDINPKAVDLAI----EGIAG 50
                68*****************666.7**********99864....33444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8.4
                 TSEEEES-TTSHHHHHH CS
      TrkA_N  41 glevvvgdatdeevLee 57 
                  +evv g at++ev+e+
  CTQ27819.1 152 LVEVVSGLATSTEVVEQ 168
                 57899999999999886 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.8
                 EEEEEESSHHHHHHHHHTT.SEEEES-.TTSHHHHHHTTG CS
      TrkA_N  23 dvvvidkdeerveelreeg.levvvgd.atdeevLeeagi 60 
                 dv++ +++ e++  l+ +   +vvv d ++++ v+ +a +
  CTQ27819.1 317 DVLLLETEGETALALSIKHhRPVVVYDlCASDTVVLAAAA 356
                 5888888888887777666344444441444444444444 PP

>> MORN  MORN repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00011      0.16       8      19 ..     275     286 ..     273     289 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
        MORN   8 GkrhGkGvytwp 19 
                 Gk+ G+Gvy+wp
  CTQ27819.1 275 GKKSGHGVYRWP 286
                 9**********9 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00019      0.29      38      73 ..       7      42 ..       3      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00019
                  EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73
                   v++iG G +G  +a++++a g  v ++d ++k+ +
    CTQ27819.1  7 NVAVIGSGTMGAGIAEVAAAAGHPVRIFDINPKAVD 42
                  689***************************999665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   0.00036      0.54       1      35 [.       7      41 ..       7      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00036
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35
                +v+v+G+G+ g   A+++a+ g+ V +++ ++k  
  CTQ27819.1  7 NVAVIGSGTMGAGIAEVAAAAGHPVRIFDINPKAV 41
                599************************99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3255.26
//
Query:       CTQ27820.1  [L=140]
Description: phenylacetate pathway hotdog-fold thioesterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-20   71.4   0.0    8.7e-20   70.9   0.0    1.3  1  4HBT      Thioesterase superfamily
    8.4e-05   22.7   0.0    0.00011   22.3   0.0    1.2  1  DUF4442   Domain of unknown function (DUF4442)
     0.0043   17.3   0.2     0.0057   16.9   0.2    1.1  1  4HBT_3    Thioesterase-like superfamily
  ------ inclusion threshold ------
      0.013   14.8   0.0      0.013   14.7   0.0    1.2  1  PS-DH     Polyketide synthase dehydratase
      0.074   13.5   0.0      0.079   13.5   0.0    1.2  1  4HBT_2    Thioesterase-like superfamily
      0.078   12.8   0.0       0.14   12.0   0.0    1.6  1  YiiD_C    Putative thioesterase (yiiD_Cterm)


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   2.9e-23   8.7e-20       2      78 ..      49     122 ..      48     123 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 2.9e-23
                 SSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEE CS
        4HBT   2 GvvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrlv 78 
                  ++hgG++++l+D+a ++a++s+g+   ++v+++ sidflrp+  gd+l+++arv ++g+ + v+++e+++++++ v
  CTQ27820.1  49 QTCHGGQLFTLADTAFAYACNSQGL---AAVASAASIDFLRPAFAGDRLVATARVKQQGKLTGVYDIEIVNQQQKIV 122
                 799*********************9...7*******************************************99876 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   3.7e-08   0.00011      16     104 ..      19     104 ..       6     129 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3.7e-08
                 GGGG--EEEEEETTEEEEEE---GGGB-TTSSB-HHHHHHHHHHHHHHHHHHHS-TTEEEEEEEEEEEE-S-..--S-EEEEEE-TTS-TT CS
     DUF4442  16 fgtvgprieelepgraevrlkkrrrvrNhigtvHAiAicnlaElamGllaeatlpdthrwipkgmevdYlak..atgdltavaelepedvg 104
                  + +g+   e++ g a+++++  +++ N  +t H++ +++la++a+   ++    ++   +  ++++d+l++  a  +l a+a+++++  g
  CTQ27820.1  19 ARKMGIELVEIDDGFAQMSMTVSADMLNGHQTCHGGQLFTLADTAFAYACNS---QGLAAVASAASIDFLRPafAGDRLVATARVKQQ--G 104
                 56789999*************************************9887765...6899999**********4334457777777653..2 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2   1.9e-06    0.0057       5      78 ..      44     123 ..      40     129 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.9e-06
                 GECTTC..-HHHHHHHHHHHHHHT..-S.SS....EEEEEEE-S---SE.EEEEEEEEEE--SS-EEEEEEEEETTEEEEE CS
      4HBT_3   5 wtpggag.yGGyvlAlalraaqrtv.pdprl....hslhvyFlrpgdag.pviyhvervrdGrsfstrtvelsqggrpift 78 
                   +g++  +GG++  la  a   +  ++ +l     +++++Flrp+ ag +++ ++++  +G+ + ++ +e+  ++++i+ 
  CTQ27820.1  44 MLNGHQTcHGGQLFTLADTAFAYACnSQ-GLaavaSAASIDFLRPAFAGdRLVATARVKQQGKLTGVYDIEIVNQQQKIVA 123
                 56788866*****999987777554222.34444799***********************************988887765 PP

>> PS-DH  Polyketide synthase dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.5e-06     0.013     229     285 ..      72     127 ..      24     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.5e-06
                 --EEEEEEEEEEE-S...-BTS--EEEEEE----SS-EEEEEEEE-SS-BEEEEEES CS
       PS-DH 229 aaylPvaierlrvyrpssaageelwvharleeegarsivadltlvdedGrvvaeieg 285
                  ++   +  ++++  +++ ag++l ++ar++++g+ + v+d+++v++++++va ++g
  CTQ27820.1  72 GLAAVASAASIDFL-RPAFAGDRLVATARVKQQGKLTGVYDIEIVNQQQKIVALFRG 127
                 55555667788888.5777999*******************************9988 PP

>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.6e-05     0.079      42      95 ..      71     123 ..       9     133 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.6e-05
      4HBT_2  42 rgiglilssahvryrrplkfpdrltvefrvididaktliiehrflsnadgkk.aa 95 
                 +g + + s+a +++ rp++ +drl  + rv +  + t+  + ++++  +++k +a
  CTQ27820.1  71 QGLAAVASAASIDFLRPAFAGDRLVATARVKQQGKLTGVYDIEIVN--QQQKiVA 123
                 3678899999**************9999999999999999999999..4444344 PP

>> YiiD_C  Putative thioesterase (yiiD_Cterm)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.7e-05      0.14      15      55 ..      19      60 ..      10     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.7e-05
      YiiD_C 15 seamgikvesydgkelelsaplapN.iNlkgtmFaGSiytla 55
                +++mgi++ ++d+   ++s+ +++  +N ++t  +G ++tla
  CTQ27820.1 19 ARKMGIELVEIDDGFAQMSMTVSADmLNGHQTCHGGQLFTLA 60
                689**********99999999887637************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1029.24
//
Query:       CTQ27821.1  [L=401]
Description: beta-ketoadipyl CoA thiolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-74  249.9   0.0    3.4e-74  249.5   0.0    1.2  1  Thiolase_N     Thiolase, N-terminal domain
    3.2e-46  156.0   0.5    3.2e-46  156.0   0.5    1.6  2  Thiolase_C     Thiolase, C-terminal domain
    4.5e-05   23.1   0.0    0.00013   21.6   0.0    1.8  1  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.5   0.0   5.8e-78   3.4e-74       2     260 .]       5     269 ..       4     269 .. 0.91

  Alignments for each domain:
  == domain 1  score: 249.5 bits;  conditional E-value: 5.8e-78
                 EEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHT.S-GGGCCEEEEEHSSCTTSTSC.HHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHH CS
  Thiolase_N   2 vivsaartpigkfggslkdlsaeeLlaealkallekag.vdpeevdevivGnvlqagegqn.iarqaalkagipeevpavtvnkvcsSglkavalaaqs 98 
                 +i ++ rtpig++gg+l++++a++L+a+ l++ll++++ +dp+++d+vi+G+  qage++  +a +a+l ag p++vp +t+n++c+Sgl+a+  aa++
  CTQ27821.1   5 FICDGIRTPIGRYGGALASVRADDLAAIPLRELLSRNPgLDPAAIDDVIFGCANQAGEDNRnVAHMATLLAGYPHTVPGTTINRLCGSGLDAIGFAARA 103
                 68999********************************99*****************665544************************************* PP

                 HHTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHH....HTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTT CS
  Thiolase_N  99 iaageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipd....gladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkF 193
                 i+ag+ad ++agGvEsms+ap ++ ++  + ++ ++e    ++ +      +a+ f    m  taen+a+  +isR +qd+fA +s+q+ a+aq +g +
  CTQ27821.1 104 IKAGDADLLIAGGVESMSRAPFVMGKA-SAPYQRQAELFDTTIGWRfvnpLMAQHFGTDSMPETAENVAELLNISRADQDAFAWRSQQRTAQAQRDGIL 201
                 ************************944.444444444333333333222235667888999************************************** PP

                 TTTBE-EEEEESSSE.EEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEHH CS
  Thiolase_N 194 kdeivPvkvkgkkgk.ktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmses 260
                 ++eivPv++ g+kg  + v +de++r+e+t+e+Laklk  F++ G +tAgnas+++DGaaa++++se+
  CTQ27821.1 202 AQEIVPVQIVGRKGAvSDVREDEHPRPETTLEQLAKLKAPFRQGGVITAGNASGVNDGAAALIIASEQ 269
                 ***************99************************************************985 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.4   8.4e+03      96     116 ..     237     257 ..     232     265 .. 0.61
   2 !  156.0   0.5   5.4e-50   3.2e-46       2     123 .]     277     400 ..     276     400 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.4
                 HHHHCTTSEEEEEEEETTTEE CS
  Thiolase_C  96 elkkeggklgvaalCigggqg 116
                 +lk   ++ gv+++ +++g  
  CTQ27821.1 237 KLKAPFRQGGVITAGNASGVN 257
                 556666677777777777643 PP

  == domain 2  score: 156.0 bits;  conditional E-value: 5.4e-50
                 --SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G..GGBSTT--HHHH-B-TTTHHHHHHHHHHHHHH CS
  Thiolase_C   2 kplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl..ekvNvnGGaialGHPlGasGaRivvtllselk 98 
                 +p a+i+++a++gv+p+ +glgP++a++kvl++agl+++d+dl+E+nEAFaaqaL v+++l++     +vN nGGaialGHPlG+sGaR++ ++  el+
  CTQ27821.1 277 TPRARIVAMATAGVEPRLMGLGPVPAVRKVLERAGLNINDMDLIELNEAFAAQALGVLRQLGVPDdaAHVNPNGGAIALGHPLGMSGARLALSASLELQ 375
                 799***********************************************************9653389****************************** PP

                 HCTTSEEEEEEEETTTEEEEEEEEE CS
  Thiolase_C  99 keggklgvaalCigggqgvalviek 123
                 ++gg++++ ++Cig gqg+a+++e+
  CTQ27821.1 376 RRGGRYALCTMCIGVGQGIAMILER 400
                 **********************985 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.2e-08   0.00013     174     207 ..      89     122 ..      78     142 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.2e-08
                    GGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---S CS
  ketoacyl-synt 174 ACsSslvavhaavqslrsgeadvalaGGvelllt 207
                     C S+l a+  a +++++g+ad+ +aGGve +  
     CTQ27821.1  89 LCGSGLDAIGFAARAIKAGDADLLIAGGVESMSR 122
                    69****************************6543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2895.82
//
Query:       CTQ27822.1  [L=438]
Description: phenylacetyl-CoA ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-26   92.1   0.0      4e-26   91.1   0.0    1.5  1  AMP-binding_C_2  AMP-binding enzyme C-terminal domain
    2.3e-15   56.1   0.0    3.8e-15   55.4   0.0    1.3  1  AMP-binding      AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding_C_2  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.0   4.5e-30     4e-26       1      96 []     336     432 ..     336     432 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 4.5e-30
                      TEEE-HHHHHHHHHT-TTEEEEEEEEEEEETTEEEEEEEEEE-T.T----HHHHHHHHHHHHHHHHHHHSS--EEEEE-TT-S---------EE CS
  AMP-binding_C_2   1 GvnvfPsqieevlkeieevepeYqivvtregelDelevkvEvke.gfsdelkelealekkiakklksklgvsvkvelvepgtlprsegKakrvi 93 
                      GvnvfPsq+ee + ++e+++p+Yq+ v+r+g+lD+l+v+vE+ke g++ + +++ ++ +++++++ks++g+s+++++v+ g++prsegKa rv+
       CTQ27822.1 336 GVNVFPSQLEEEILKFEHLAPHYQLEVNRRGHLDSLAVRVELKEsGLALSHEQRCQICHQLRHRIKSMVGISTDITIVNCGSIPRSEGKACRVF 429
                      9*******************************************88888989999*************************************** PP

                      E-S CS
  AMP-binding_C_2  94 DkR 96 
                      D R
       CTQ27822.1 430 DLR 432
                      *98 PP

>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   4.3e-19   3.8e-15     152     369 ..      78     289 ..      13     293 .. 0.75

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 4.3e-19
                  CCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHH..HHHHHHHHHHHCSCCTTT-EE.EESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHH CS
  AMP-binding 152 eeeelkpddlayiiYTSGTTGkPKGVmlshrnl..vanvaslkletrfklkeddvv.lsilplahifglilelllallsGatvvllpkdaaldpklll 246
                  ++ ++  ++++ i  +SGTTGkP  V ++++ +   an+ + +l+   + +++d++ +++    +  gl  + ++a   Gatv+ +++ ++ ++   +
   CTQ27822.1  78 DTFAVPMEQVVRIHASSGTTGKPTVVGYTQNDIdnWANIVARSLRAAGG-SAKDKIhVAYGYGLFTGGL-GAHYGAERLGATVIPMSGGQTEKQ---A 170
                  344677899999999***********99998884433333312444444.4567662666666666665.*****************9999332...6 PP

                  HHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT.-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE- CS
  AMP-binding 247 elieklkvtviagvPrvleallesgalkaakkakdlss.lrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkpl 343
                  +li+++++ +i+++P+ +  l+e+ ++++       +  lr+ ++g+ep   ++  ++++++g + l++YGl+E  g  + ++  e+ +++   G+ +
   CTQ27822.1 171 QLIRDFQPDMIMVTPSYCLNLIEELERQM--GGDARGCsLRVGVFGAEPWTLAMRAEIERRLGITALDIYGLSEVMGPGV-AM--ECLETVD--GPTI 261
                  89*******************99655553..22233334*************************99************99.45..4433344..6666 PP

                  T..TEEEEEE-TTTSCBEETTSEEEEEE CS
  AMP-binding 344 p..gvevkivDeetgepvpdgeeGellv 369
                  +  +   +iv++++g p++dge Gell+
   CTQ27822.1 262 WedHFFPEIVNPDDGTPLEDGEHGELLF 289
                  53477789******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3334.59
//
Query:       CTQ27823.1  [L=311]
Description: DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-30  102.8   0.1    1.5e-29  102.1   0.1    1.3  1  PaaX_C    PaaX-like protein C-terminal domain
    4.8e-25   87.6   0.4    9.6e-25   86.6   0.4    1.5  1  PaaX      PaaX-like protein
  ------ inclusion threshold ------
      0.092   11.4   0.0       0.12   11.0   0.0    1.1  1  DHR-2     Dock homology region 2


Domain annotation for each model (and alignments):
>> PaaX_C  PaaX-like protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.1   2.6e-33   1.5e-29       2      98 ..     186     284 ..     185     285 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 2.6e-33
      PaaX_C   2 relveelWdldelaakYeeflaeyrpllkellekee..lapeeaFlvrtlllheyrkllfrDPgLPeellpedWpGaaarelfrelyrelaeaaerfle 98 
                 r++vee+W+l+e ++ Ye+f+a +rpll  l++ ++  l+p ++F+ ++ll+h yr+++++DP LPeellp++W G++ar+l+ ++y+++++ a +f++
  CTQ27823.1 186 RSRVEECWHLTEQNEMYEAFIALFRPLLPLLRDCDPseLTPDRCFQIQLLLIHFYRRVVLKDPLLPEELLPAHWAGQTARQLCINIYQRVSPGALAFVS 284
                 689***********************8888887777779*******************************************************99986 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.4   1.6e-28   9.6e-25       2      70 .]      22      90 ..      21      90 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 1.6e-28
        PaaX  2 arSlivtlygdyveprggaiwlgsLirllaelGiseslvRaalsRlakaGwlvrekegrrsfYrLsdkg 70
                 +Sli +lygd++ +rgg++wlgs  +ll++lG++e++vR+al+Rl+k+ wl+  + grrsfYrLsdkg
  CTQ27823.1 22 GTSLIASLYGDALLQRGGEVWLGSVAALLEGLGFGERFVRTALFRLNKEEWLDVVRIGRRSFYRLSDKG 90
                58*****************************************************************97 PP

>> DHR-2  Dock homology region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     2e-05      0.12     148     225 ..     127     216 ..     112     219 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2e-05
       DHR-2 148 kkipkklgasaFekispnvlkeesesasalkeds............gvcdseefteeglvellekaiellkkgelyElaielyklliply 225
                  +++k+l ++ F  ++p +l  +s++  +++               + ++    + + l + +e++ +l +++e+yE+ i l + l+pl+
  CTQ27823.1 127 ADVKKQLLWQGFGALAPSLLASPSQKLADVQSLLheagvaenvicfEAHSPLALSRAALRSRVEECWHLTEQNEMYEAFIALFRPLLPLL 216
                 4567777788888888888777755555555421455677777766555666789999*****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2311.65
//
Query:       CTQ27824.1  [L=198]
Description: putative hexapeptide repeat acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-13   49.4  15.9    1.3e-07   31.1   4.0    4.0  4  Hexapep    Bacterial transferase hexapeptide (six repeats)
    1.7e-06   27.6  13.1    0.00093   18.9   4.5    3.5  4  Hexapep_2  Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   1.2e-08    0.0001       6      36 .]      15      45 ..      10      45 .. 0.88
   2 ?    1.7   0.3     0.027   2.4e+02      20      34 ..      50      64 ..      48      66 .. 0.61
   3 !   16.5   1.4   5.8e-07    0.0052       9      34 ..      79     103 ..      69     103 .. 0.89
   4 !   31.1   4.0   1.4e-11   1.3e-07       1      35 [.      88     122 ..      88     123 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.2e-08
                TTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep  6 snvlIgpfaviggnVkIGdnvkIgagvvigg 36
                + ++++p av+ g+V++G++v++g+++ ++g
  CTQ27824.1 15 EESYVHPTAVLIGDVILGKGVYVGPNASLRG 45
                67899*********************98875 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.027
                EEE-TTEEEETTEEE CS
     Hexapep 20 VkIGdnvkIgagvvi 34
                +++ d++ I  ++v 
  CTQ27824.1 50 IVVKDGANIQDNCVM 64
                456667777777665 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 5.8e-07
                 EE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   9 lIgpfaviggnVkIGdnvkIgagvvi 34 
                 +Ig++a++ ++++IG+n+ +g  +vi
  CTQ27824.1  79 HIGHGAIL-HGCVIGRNALVGMSAVI 103
                 69999999.************99998 PP

  == domain 4  score: 31.1 bits;  conditional E-value: 1.4e-11
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvig 35 
                 ++vIG n+l+g+ avi ++++IG+n+++ga + ++
  CTQ27824.1  88 GCVIGRNALVGMSAVIIDGAVIGENSIVGASAFVK 122
                 69****************************99886 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   3.4e-05      0.31       9      31 ..      18      42 ..      15      44 .. 0.84
   2 ?    2.0   0.1      0.02   1.8e+02      17      25 ..      55      63 ..      49      66 .. 0.81
   3 ?   -3.8   0.0       1.3   1.2e+04       4      10 ..      80      86 ..      79      87 .. 0.48
   4 !   18.9   4.5     1e-07   0.00093       3      28 ..      90     117 ..      88     123 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.4e-05
                EE-TT-E.ES.EEE-TT-EE-TT-E CS
   Hexapep_2  9 liGanag.iG.vslGdncvvgaGvv 31
                 +++ a+ iG v+lG+++ vg++  
  CTQ27824.1 18 YVHPTAVlIGdVILGKGVYVGPNAS 42
                58999998977***********975 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.02
                SEEE-TT-E CS
   Hexapep_2 17 GvslGdncv 25
                G ++ dncv
  CTQ27824.1 55 GANIQDNCV 63
                778999998 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 1.3
                E-TT-EE CS
   Hexapep_2  4 IGdnCli 10
                IG   ++
  CTQ27824.1 80 IGHGAIL 86
                5555544 PP

  == domain 4  score: 18.9 bits;  conditional E-value: 1e-07
                 EE-TT-EE-TT-EE..SEEE-TT-EE-T CS
   Hexapep_2   3 iIGdnCliGanagi..GvslGdncvvga 28 
                  IG n l+G +a+i  G  +G+n++vga
  CTQ27824.1  90 VIGRNALVGMSAVIidGAVIGENSIVGA 117
                 5************77************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1573.28
//
Query:       CTQ27825.1  [L=135]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-09   36.9   1.7    3.3e-09   36.9   1.7    1.7  2  GFA       Glutathione-dependent formaldehyde-activating enzym


Domain annotation for each model (and alignments):
>> GFA  Glutathione-dependent formaldehyde-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.0      0.36   6.4e+03       2       6 ..       8      12 ..       7      14 .. 0.79
   2 !   36.9   1.7   1.9e-13   3.3e-09       2      83 ..      29     105 ..      28     112 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.36
         GFA  2 lChCs 6 
                +ChC 
  CTQ27825.1  8 HCHCG 12
                8***5 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 1.9e-13
         GFA   2 lChCsdCrkasgsaftanavvkaealelleg..elkeykktadsgnkvtrsfCpeCgsplyseesaapevvivrvGtlddpekl 83 
                 +C+Cs Cr + +    +++  +++ +e+++g  +l+ey++   ++ ++ + fC+ Cg   +++++ +pe++ v+v+++d  + +
  CTQ27825.1  29 RCNCSYCRMRGA----VAVSSPRSGIEVVRGgdKLTEYRF---NTGEAVHFFCSVCGIYTFHQRRSNPEQYGVNVACIDGVSPF 105
                 7******98876....78889999******9999999998...56666677****************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1119.98
//
Query:       CTQ27826.1  [L=201]
Description: NADH-azoreductase, FMN-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-47  159.9   0.0    7.2e-47  159.7   0.0    1.0  1  Flavodoxin_2  Flavodoxin-like fold
    2.3e-10   40.5   0.0    2.8e-10   40.1   0.0    1.2  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.7   0.0     8e-51   7.2e-47       2     194 ..       3     195 ..       2     199 .. 0.91

  Alignments for each domain:
  == domain 1  score: 159.7 bits;  conditional E-value: 8e-51
                   EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTT.TEEEEEEHHCCT-----CCCCHC.....C.HHHHTTC.HHHHHHH.HHHHHCSSEEEEEEE-BT CS
  Flavodoxin_2   2 kiLiinahprpeksfssalaqafvealekagp.hevtvrdLyadflpvlttrdlaa.....k.layeekp.adveseq.iekllaadaivlqfPlww 89 
                   k+L+++++     s+s++l + fve++++++p +e+tvrdL+a ++pvl+ + + a     + l++++ + a + s++ i++l+  d+iv+++P+++
    CTQ27826.1   3 KVLVLKSSILAGYSQSGQLSDYFVEQWQEKHPgDEITVRDLAANPIPVLDGELVGAlrpsdApLTPRQ-QeALALSDElIAELKGNDVIVIAAPMYN 98 
                   9**********99*******************************************998853899999.66************************** PP

                   TB--HHHHHHHHHHS-TTTSC.EETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHHHHHHHHHTT-EEEEEEEEESCT.CCCH. CS
  Flavodoxin_2  90 fgvPailKgwiDrvltagfaf.yteeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpplrgilgfiGikdvepvlvegva.gaed. 183
                   f++P +lK+++D v++ag +f yte+g  + +g+ +gk+a+v++++Gg  +          + d ++p+l ++lgfiGi+dv +v++eg+a g+e  
    CTQ27826.1  99 FNIPTQLKNYFDLVARAGVTFrYTEKG--P-EGLVTGKRAVVVTSRGGI-HK-------DTPTDLVTPYLSTFLGFIGITDVNFVFAEGIAyGPEVa 184
                   **************************9..7.45555*************.33.......3488****************************999996 PP

                   HHHHHHHHHHH CS
  Flavodoxin_2 184 eealaealerl 194
                   ++a ++a++++
    CTQ27826.1 185 AKAQSDAKAAI 195
                   66555555554 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   3.1e-14   2.8e-10       2     151 ..       3     174 ..       2     178 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 3.1e-14
                 EEEEEES--STT.-HHHHHHHHHHCCT-T...T-CEEEEETTTS.--..---HCHGHT.........CGGSHHH........HHHHHHHHH-SCEEEEE CS
     FMN_red   2 kilvisGSlrkg.sntrklaewaaealkea..gaevelidladlilpcalcdkdlese.........gqtsddv........aellekiaaadaliivt 80 
                 k+lv+  S  +g s + +l +++ e+ +e+  g e+++ dla  + p  ++d++l  +                         el++ ++  d+++i+ 
  CTQ27826.1   3 KVLVLKSSILAGySQSGQLSDYFVEQWQEKhpGDEITVRDLAANPIP--VLDGELVGAlrpsdapltP-----RqqealalsDELIAELKGNDVIVIAA 94 
                 77777555444449999**********99878788888888888777..7777776665444555542.....0444457889**************** PP

                 EECTTCE-HHHHHHHHCHT-..........SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHHHHHH.HTT-EEEECSEEEET CS
     FMN_red  81 PeYngsysgllKnalDrlsr.........trgkkelrgKpvalvavgggrrgglraeeqlrqvla.elgaivvpraavavg 151
                 P Yn +++ +lKn +D++ r         + ++  ++gK +++v ++ g  +    +    + l+ +lg i + ++ ++++
  CTQ27826.1  95 PMYNFNIPTQLKNYFDLVARagvtfryteKGPEGLVTGKRAVVV-TSRGGIHKDTPTDLVTPYLStFLGFIGITDVNFVFA 174
                 ******************99*******97667777779999999.666779999999999999998898888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1523.24
//
Query:       CTQ27827.1  [L=67]
Description: hypothetical protein CH1034_190310 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 552.39
//
Query:       CTQ27828.1  [L=1300]
Description: ATP-dependent helicase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.8e-237  789.1   1.2   3.8e-237  788.7   1.2    1.2  1  DUF3418      Domain of unknown function (DUF3418)
    6.1e-19   68.2   0.0    1.1e-18   67.3   0.0    1.5  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    3.9e-18   65.7   0.0    9.2e-18   64.5   0.0    1.6  1  HA2          Helicase associated domain (HA2)
    5.1e-11   42.9   0.0    2.3e-10   40.8   0.0    2.2  2  Helicase_C   Helicase conserved C-terminal domain
      5e-06   26.4   0.0    1.3e-05   25.1   0.0    1.7  1  DEAD         DEAD/DEAH box helicase
    0.00014   22.2   0.7    0.00038   20.8   0.0    2.1  2  AAA_19       AAA domain
    0.00015   20.9   0.0    0.00031   19.9   0.0    1.4  1  T2SSE        Type II/IV secretion system protein
    0.00016   21.9   0.0    0.00076   19.8   0.0    2.2  1  AAA_22       AAA domain
     0.0092   15.3   0.0      0.032   13.5   0.0    1.8  2  DUF2075      Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
      0.014   15.1   0.0       0.03   14.0   0.0    1.5  1  AAA_30       AAA domain
      0.026   14.4   3.9      0.023   14.6   0.7    2.5  1  NACHT        NACHT domain
      0.034   13.6   0.0      0.089   12.2   0.0    1.7  1  PhoH         PhoH-like protein
      0.042   13.8   0.0         12    5.9   0.0    2.4  2  ResIII       Type III restriction enzyme, res subunit
       0.36   11.3   1.1       0.78   10.2   0.0    2.2  1  AAA_23       AAA domain


Domain annotation for each model (and alignments):
>> DUF3418  Domain of unknown function (DUF3418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  788.7   1.2  2.9e-240  3.8e-237       2     583 .]     713    1297 ..     712    1297 .. 0.98

  Alignments for each domain:
  == domain 1  score: 788.7 bits;  conditional E-value: 2.9e-240
     DUF3418    2 rgavvatervtLyGlpivakRrvnygkidpeeaRelFIReALVegewetkhaFfahNrklleeveeleakaRRrDilvddetlfaFYdariPadvvs 98  
                  +gav+ate+vt yGlpiva R+vny++idp+++RelFIR+ALVeg+w+t+haFf++N kl +e+eele+k+RRrDilvddet+f+FYd+ri +dv+s
  CTQ27828.1  713 QGAVMATEKVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRDNLKLRAEIEELEHKSRRRDILVDDETMFEFYDQRISHDVIS 809 
                  89*********************************************************************************************** PP

     DUF3418   99 arhfdkWwkkarkedpklLdltredLlreeaaevteedFPdslglgglelplsYqFePgseaDGVtvtvplalLnqvsaerfeWlVpGlleekvtal 195 
                  arhfdkWwk+a++e+p+lL++++++L++e+a++v++ d+P+ ++ g+l+l+lsYqFePg++aDGVtv++pl+lLnqv++++feW++pGl++e+++al
  CTQ27828.1  810 ARHFDKWWKQASRETPDLLNFEKSMLIKEGAEQVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEEAGFEWQIPGLRRELIIAL 906 
                  *******************************************8899************************************************** PP

     DUF3418  196 iksLPKalRrnlvPapdvaaavlerleekkpaegpLleaLaralrrltgveveeddfdlekLpahlrmnfrvvdekgkvlaegrdlaaLkarlaeka 292 
                  iksLPK++Rrn+vPap++a+a+l r    +p e pLl++L+r+lr++tgv++++++++++++p+hl+++frvvd+k+k+l+egr+l+aLk+ l++k+
  CTQ27828.1  907 IKSLPKPVRRNFVPAPNYAEAFLGRA---APLELPLLDSLERELRKMTGVTIDREAWQWDQVPDHLKITFRVVDDKNKKLQEGRSLQALKDALKGKV 1000
                  ***********************888...999***************************************************************** PP

     DUF3418  293 raavaaaakaa.erkgltswdfgelpetveikrggqevkgypaLvdegdsvalrvfdteaeaaaahraGlrrLlllalkeqlkqlekqlpnkqklal 388 
                  +++++a+a++  e++gl+ w+fg+l e++e+krg+ +vk++paLvde dsva+++fd+++e+++a+++GlrrLlll++++++k+l+++lpnk+kl l
  CTQ27828.1 1001 QETLSAVADDGiEQSGLHIWSFGTLAESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPQEQQQAMWRGLRRLLLLNIPSPIKYLHEKLPNKAKLGL 1097
                  *******99889************************************************************************************* PP

     DUF3418  389 aaaplgsveaLlddliaaaldrlla..eelp.rdeaeFealleevraelaeeaqevvrlveeilaaaaevekklkkaks..laa..ladireqleeL 478 
                   ++p+g+v +L+dd+i++ +d+l+      p ++e+ F++l ++vrael++++ e++++ve+il+a+ +++k+lk++ +  + a  l+di++q++ L
  CTQ27828.1 1098 YFNPYGKVLDLIDDCISCGVDKLIDeaG-GPvWTEEGFSQLHDKVRAELNDTVVEIAKQVEQILTAVFNINKRLKGRVDmtM-AlgLSDIKAQMAGL 1192
                  ************************8642.236********************************************999543.366*********** PP

     DUF3418  479 vypgfvaatpaerLqhlprYlkAielRleklkadparDaeklaeveeleqayaellaklpeeradseeleeirwlieElrVslFAqeLgTavpVSek 575 
                  vy+gfv+  +++rL +  rYl+Aie+Rlek++ dp+rD++++ +ve+++qa+++ l+klp++r+++++++eirw+ieElrVs+FAq+LgT++p+S+k
  CTQ27828.1 1193 VYRGFVTGNGFRRLGDTLRYLQAIEKRLEKMAIDPHRDRAQMLKVESVQQAWQQWLNKLPPNRREDDDVREIRWMIEELRVSFFAQQLGTPYPISDK 1289
                  **********************************************************99999*9999***************************** PP

     DUF3418  576 Rlekalae 583 
                  R+ +a+++
  CTQ27828.1 1290 RVLQAMEQ 1297
                  ****9985 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   8.6e-22   1.1e-18       1      82 [.     622     698 ..     622     700 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 8.6e-22
                  HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHSTT CS
  OB_NTP_bind   1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfagq 82 
                  ++ +ll Gl+++i++kd  k++y++ar + r++i+p S l+k    k+p+w + +elvet++l+ r  ++i+p+w++++a++
   CTQ27828.1 622 IHTALLTGLLSHIGMKDADKQEYTGAR-NARFSIFPGSGLFK----KPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQH 698
                  799***********************9.*************9....*********************************998 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   7.2e-21   9.2e-18       2      78 ..     466     552 ..     465     585 .. 0.77

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 7.2e-21
         HA2   2 lelLvalgAL.....deegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeee.......e 78 
                 ++lL +lgA+     ++  +lT+lGr++++lP++prla+m l a  +++gc++e++ i +als +++  ++ ++++ ++e+       e
  CTQ27828.1 466 VRLLEELGAIttdaqATAYKLTPLGRQLSQLPVDPRLARMVLEA--QKHGCVREAMIITSALSIQDPRERPMDKQQASDEKhrrfhdkE 552
                 689*******7666433466************************..777*******************999988777666433333330 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       5.8   7.4e+03       6      35 ..     213     241 ..     210     268 .. 0.74
   2 !   40.8   0.0   1.8e-13   2.3e-10      12     110 ..     286     403 ..     270     404 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5.8
                 HHHHHHHTTTTSEEEEEESSHH..HHHHHHHH CS
  Helicase_C   6 llellkleeeggkilifvntid..rlekvkll 35 
                 l+ell  ++ + ki+i + tid  r++  k +
  CTQ27828.1 213 LKELL-PRRPDLKIIITSATIDpeRFS--KHF 241
                 66777.678888999999999977664..555 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 1.8e-13
                 HTTTTSEEEEEESSHHHHHH.HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS....SSH...... CS
  Helicase_C  12 leeeggkilifvntidrlek.vklllekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp....rnv...... 97 
                  +e  g+ilif+   +++ + ++ l++    + +v++l+++l+++e++++++   +g +++++at+vae+++++p++++Vi+ +      +        
  CTQ27828.1 286 GREGPGDILIFMSGEREIRDtADALNKLDlrHTEVLPLYARLSNSEQNRVFQPH-SG-RRIVLATNVAETSLTVPGIKYVIDPGTArisrY-Syrtkvq 381
                 5678899*********9977655553323568********************99.55.48*********************9999955442.0567779 PP

                 .........HHHHHHHTTSSST CS
  Helicase_C  98 .........tsyiqriGRtgRa 110
                          +s++qr+GR+gR+
  CTQ27828.1 382 rlpiepvsqASANQRKGRCGRV 403
                 999999999************7 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0     1e-08   1.3e-05       5     170 ..      84     233 ..      80     239 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1e-08
                 HHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEE..EESSHHHHHHHHHHHHHHTTTSTSEEEEEET.TSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
        DEAD   5 aeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkali..vePtreLaeqtlnnlkkfkkyidlrvlliig.gvaardqlskldngvdi 100
                 +e+++++ + + v+va+eTGsGKT+   +p +   +e    +g k li    P r  a+ ++n++ + ++    +   +ig +v+ +d +s+    + +
  CTQ27828.1  84 QEILEAVRDHQVVIVAGETGSGKTTQ--LPKI--CME--LGRGLKGLIghTQPRRLAARTVANRIAEELQS---EPGGCIGyKVRFSDHVSEN---TMV 170
                 577788888899************97..5555..233..55666666644789999999999999998884...3445566345555555544...889 PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlp 170
                  ++t g l+  +++ +  l q  ++++DEa++ + +   df+   l++l     + + l+  +i+ SAT+ 
  CTQ27828.1 171 KLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLN--IDFLLGYLKEL---LPRRPdLK--IIITSATID 233
                 99********886555.49************98887..67777767777...45555344..*******97 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     3e-07   0.00038       5     121 ..      87     209 ..      83     226 .. 0.65
   2 ?   -3.6   0.0       9.9   1.3e+04     103     125 ..     585     608 ..     539     609 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3e-07
      AAA_19   5 ve.alkekvllvtaGpGtGKTrvlkhivallve.....lggvkpeeillvaftgrAakelrerlaalgae.........atTiHrlalldfddllteal 88 
                 +e    ++v++v +  G+GKT+ l +i+ +l +     +g+ +p+++++ ++++r a+el+ +  +  +           +T+ +l  + +d++     
  CTQ27828.1  87 LEaVRDHQVVIVAGETGSGKTTQLPKICMELGRglkglIGHTQPRRLAARTVANRIAEELQSEPGGCIGYkvrfsdhvsENTMVKL--M-TDGI----- 177
                 553467889999999**************998822222455677999999999999999887663332223434444434444444..1.2222..... PP

      AAA_19  89 elleeaeeekklqeeellivDEfqdvdelqyrL 121
                  ll e ++++ l + +++i+DE+ + +  +  L
  CTQ27828.1 178 -LLAEIQQDRLLMQYDTIIIDEAHERSLNIDFL 209
                 .334667778885555******98766554444 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 9.9
      AAA_19 103 ee.llivDEfqdvdelqyrLlkal 125
                    +l v E qd++ +  +++k+l
  CTQ27828.1 585 FLnYLRVREWQDIYTQLRQVVKEL 608
                 224888999999998888887765 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.4e-07   0.00031     116     151 ..      81     115 ..      14     124 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.4e-07
       T2SSE 116 ekiaevlrkavrerglilvsGgTgsGKttllyallk 151
                 +k +e+l+ avr +++++v+G TgsGKtt l  +  
  CTQ27828.1  81 QKKQEILE-AVRDHQVVIVAGETGSGKTTQLPKICM 115
                 55555665.6699****************9966655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   5.9e-07   0.00076       4     117 ..      92     218 ..      88     231 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.9e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka..................erlsseelleale. 83 
                 ++++++v Ge+G+GKTt l ++ ++l +        ++++  t p     ++++++++++l++e  +                  +  +   ll+ ++ 
  CTQ27828.1  92 DHQVVIVAGETGSGKTTQLPKICMELGRG------LKGLIGHTQPRRLAARTVANRIAEELQSEPGGcigykvrfsdhvsentmvKLMTDGILLAEIQq 184
                 67899*********************544......45555444444447**************9999*********88877777766666666644440 PP

      AAA_22  84 qalraravielliiDEaqhlrs...eealeeLrslln 117
                 + l  ++    +iiDEa+   s   + +l +L++ll 
  CTQ27828.1 185 DRLLMQY--DTIIIDEAHER-SlniDFLLGYLKELLP 218
                 4455555..5********96.4446888888877754 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.5e-05     0.032       2      98 ..      94     200 ..      93     206 .. 0.81
   2 ?   -2.3   0.0       1.6     2e+03     123     179 ..    1049    1152 ..    1029    1160 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-05
     DUF2075   2 avvlVtGvaGtGKtvvllnllael.......eddeeertavylsvNhplvlvlrealakke.ekkkkkeafeklssfinnlsef...kkaeekkeepke 89 
                 +vv+V G++G+GKt  l ++  el         + + r+ +  +v ++  + l+++  ++   k ++++ +++ + +++ ++ +    + ++++   + 
  CTQ27828.1  94 QVVIVAGETGSGKTTQLPKICMELgrglkglIGHTQPRRLAARTVANRIAEELQSEPGGCIgYKVRFSDHVSENT-MVKLMTDGillAEIQQDRLLMQY 191
                 79**********************999888877777777778888888888899998888866666666666544.4444444479999999******* PP

     DUF2075  90 dvvivDEAh 98 
                 d +i+DEAh
  CTQ27828.1 192 DTIIIDEAH 200
                 ********* PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
     DUF2075  123 akvvvalvDegQelntgeigteee.........lkklakkleveleekv..............................................hL 164 
                  ++v + l+D+ Qe ++    + ++         +k l +k        +                                              +L
  CTQ27828.1 1049 DSVAIKLFDNPQEQQQAMWRGLRRllllnipspIKYLHEK--------LpnkaklglyfnpygkvldliddciscgvdklideaggpvwteegfsQL 1137
                  4566666666666555543333334433322222222222........1222333445555555555555555555555555555555555555566 PP

     DUF2075  165 ksqfRvaaseaview 179 
                  + ++R + +++v+e 
  CTQ27828.1 1138 HDKVRAELNDTVVEI 1152
                  666666666666655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.3e-05      0.03      12      97 ..      89     199 ..      78     205 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.3e-05
      AAA_30  12 alltsgdrvavltGpAGtGKttalkal.reaweaag........grviglAptgkaAkvLa..................eelgieastiakllkrlkgr 83 
                 a + + ++v+++ G  G+GKtt l ++  e+ +  +        +r+++ +  ++ A++L+                  e++ ++ +t   ll + ++ 
  CTQ27828.1  89 A-VRD-HQVVIVAGETGSGKTTQLPKIcMELGRGLKglightqpRRLAARTVANRIAEELQsepggcigykvrfsdhvsENTMVKLMTDGILLAEIQQ- 184
                 3.333.45****************99966666666348889888899999999999999995555444444444444333444555555555555555. PP

      AAA_30  84 arlepg.tllivDEa 97 
                  rl  + + +i+DEa
  CTQ27828.1 185 DRLLMQyDTIIIDEA 199
                 4555555*******9 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.7   1.8e-05     0.023       2      28 ..      95     121 ..      94     258 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegk 28 
                 +vi+ Ge GsGKTt l k+++++ +g 
  CTQ27828.1  95 VVIVAGETGSGKTTQLPKICMELGRGL 121
                 89*********************9885 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.9e-05     0.089       6      33 ..      80     107 ..      77     115 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.9e-05
                 SHHHHHHHHHHHH-SEEEEE--TTSSTT CS
        PhoH   6 tkeQkeylealkkndivfaiGpaGtGKt 33 
                 +++ +e+lea++++++v+++G++G+GKt
  CTQ27828.1  80 SQKKQEILEAVRDHQVVIVAGETGSGKT 107
                 6677899********************9 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0093        12      21      46 ..      56     115 ..      36     122 .. 0.64
   2 ?    5.4   0.0     0.013        17     122     143 ..     180     201 ..     137     232 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0093
                 ....................................TTSEEEEEESTTSTHHHHHHHHHH CS
      ResIII  21 s..................................krdkrglikmaTGtGKTlvaaklie 46 
                 +                                  ++++ ++++ +TG+GKT  + k++ 
  CTQ27828.1  56 QaagkvllreaarpaitypenlpvsqkkqeileavRDHQVVIVAGETGSGKTTQLPKICM 115
                 455555555555555555555666665566666656677788999*******87766665 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.013
                 .....HHHTTT-SEEEEETGGG CS
      ResIII 122 eeeseellrdrfdviiiDEaHr 143
                  e +++ l  ++d iiiDEaH 
  CTQ27828.1 180 AEIQQDRLLMQYDTIIIDEAHE 201
                 566888899999*********7 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00061      0.78      18     126 ..      92     218 ..      78     306 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00061
      AAA_23  18 skgltlItGpNGaGKTTildAiklaLygetprlsrks.....grgfeksdveiesegkvkay..veltfenkdgry...........trsiererelsk 98 
                 ++ ++++ G++G+GKTT l  i+  L+   ++l +         + + + ++ e + +  ++  ++++f++   ++             +i+++r l +
  CTQ27828.1  92 DHQVVIVAGETGSGKTTQLPKICMELGRGLKGLIGHTqprrlAARTVANRIAEELQSEPGGCigYKVRFSDHVSENtmvklmtdgilLAEIQQDRLLMQ 190
                 78899************9988888777544444333334333222223333333333333444555555443333345555555555666666666666 PP

      AAA_23  99 kkgkttkkaklelleideleqfisellg 126
                  ++  +++a +++l+id l  +++ell 
  CTQ27828.1 191 YDTIIIDEAHERSLNIDFLLGYLKELLP 218
                 6666666666666666666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      714  (0.0398237); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.46
# Mc/sec: 8480.95
//
Query:       CTQ27829.1  [L=224]
Description: O-methyltransferase MdmC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-41  139.3   0.0    1.1e-40  139.1   0.0    1.0  1  Methyltransf_3   O-methyltransferase
    1.1e-15   58.5   0.0      2e-15   57.7   0.0    1.4  1  Methyltransf_24  Methyltransferase domain
    9.9e-08   31.9   0.0    1.4e-07   31.4   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    9.7e-07   28.7   0.0    1.1e-06   28.6   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0026   18.4   0.0     0.0046   17.6   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
     0.0031   17.2   0.0     0.0042   16.8   0.0    1.1  1  GCD14            tRNA methyltransferase complex GCD14 subunit
  ------ inclusion threshold ------
      0.033   13.8   0.0      0.054   13.1   0.0    1.2  1  Cons_hypoth95    Conserved hypothetical protein 95
       0.13   12.2   0.0       0.19   11.6   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
       0.18   11.4   0.0       0.25   10.9   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1   0.0   5.6e-44   1.1e-40      21     200 ..      35     206 ..      23     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: 139.1 bits;  conditional E-value: 5.6e-44
                     TTST.TGGGS--HHHHHHHHHHHHHHT--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHHHHH CS
  Methyltransf_3  21 akktdlsemevsvdegqfLslLvklvnakrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekieliegdalkvLeel 115
                      ++ +l+   v++++gqfL lLv+l++akr+leiG+  Gys + +a +lP DG++l+++ d  ++++a++ +q agv++++ l+eg+al+ Le l
      CTQ27829.1  35 NHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLEAL 129
                     566779999************************************************************************************99 PP

                     HTSSS---EEEEEE-S-GGGHHHHHHHHHHTEEEEEEEEEE-TTGGGGGG-SS--SHHHHH.....HHHHHHHHTT-TTEEEEEE CS
  Methyltransf_3 116 vkdkklpefDfifvDaDkssyvnyyeklleLvkvGgliaiDntLWeGkvveeddeeakalreyravllelnkklaeDprveisll 200
                      +    p fD+if+DaDk + ++y + +l+  + G li  Dn++  G+vv+++   ++++      + ++ +++ ++pr+  + l
      CTQ27829.1 130 GE---CPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQG-----VRQFIEMMGAEPRLTATAL 206
                     64...379*******************************************9877766666.....5577778888888876655 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0     1e-18     2e-15       1     105 [.      66     168 ..      66     169 .. 0.93

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 1e-18
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare....aglddrvrlikadseealasla.agsiDllfiDgghaaeavledle 89 
                      +EiG+  G+st+w++r l + g+  l++++ d+   ++a++are    ag+d+rv+l+++++ + l+ l     +Dl+fiD++  +    ++l+
       CTQ27829.1  66 LEIGTLGGYSTIWMARELPADGQ--LLTLEADA---HHAQVAREnlqlAGVDQRVTLREGPALQSLEALGeCPAFDLIFIDAD--KPNNPHYLR 152
                      7*******************995..********...888889888889**************999999997668*******88..8899999** PP

  Methyltransf_24  90 allprlapggvvlfdD 105
                      ++l++ +pg++++ d+
       CTQ27829.1 153 WALRYSRPGTLIIGDN 168
                      *************998 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   7.3e-11   1.4e-07       2     114 ..      60     180 ..      59     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 7.3e-11
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.lekl.ledekfDlilsnevlnaladpdk 92 
                      ++++r+l++G+  G+ t+ +a+el  ++++  ++ +++  ++Aren+q  g+d +v++++g++ + le l  +   fDli+ +   ++ ++++ 
       CTQ27829.1  60 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDqRVTLREGPALQsLEALgEC-PAFDLIFID---ADKPNNPH 149
                      6789*************************************************************9**98777.7*******9...899***** PP

  Methyltransf_31  93 ileeiervlkpggilliedpr.........l 114
                      +l+ + r+ +pg+ ++ +++           
       CTQ27829.1 150 YLRWALRYSRPGTLIIGDNVVrdgevvnpqS 180
                      *************999888774444444440 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   5.4e-10   1.1e-06      66     160 ..      53     152 ..      29     215 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 5.4e-10
                 HHHTT.--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-GGGTTGGG..-S.EEEEEESSBBSS--HHH CS
        PCMT  66 lelle.lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDGrkGyeek..aP.YdaihvgaaapeiPeal 159
                 l ll  l++ +r+Le+G+  Gy t  +ar + ++g+++++e  ++ ++ a++nl+  +++ +v++++g   +  e+    P +d i++ a  p+ P+ l
  CTQ27829.1  53 LALLVrLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDqRVTLREGPALQSLEALgeCPaFDLIFIDADKPNNPHYL 151
                 444435****************************************************9989******999998864223449*******999999876 PP

                 H CS
        PCMT 160 i 160
                  
  CTQ27829.1 152 R 152
                 5 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.3e-06    0.0046       1      96 [.      65     161 ..      65     161 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.3e-06
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBC.CGBSS..STTTEEEEEEESTGGGSSHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl..nvefvqgda.edlpf..edgsfDlvvssgalhhlsdedlekalke 88 
                      +L++G+  G  t+++a++l+ +++++ ++ ++   + are+++ +g+  +v++++g a ++l+   e   fDl+++  a    ++++ +++l+ 
       CTQ27829.1  65 ILEIGTLGGYSTIWMARELPaDGQLLTLEADAHHAQVARENLQLAGVdqRVTLREGPAlQSLEAlgECPAFDLIFID-A----DKPNNPHYLRW 153
                      8******************669*********************9*99999***99999655775334559****993.3....55666667777 PP

                      HHHHEEEE CS
  Methyltransf_25  89 iarvLkpg 96 
                      + r  +pg
       CTQ27829.1 154 ALRYSRPG 161
                      77766665 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.1e-06    0.0042      34     101 ..      55     122 ..      44     149 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.1e-06
       GCD14  34 mkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDv 101
                   ++l++  +++e Gt  g  +  +ar +   G+l t+e  ++ a+ are+++  +++q vt+++  +
  CTQ27829.1  55 LLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPA 122
                 56789999********99999999**************************************987554 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.7e-05     0.054      68     120 ..      90     141 ..      86     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.7e-05
                    EEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE- CS
  Cons_hypoth95  68 vlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflD 120
                    + +e d++ +++ +enl+  +++++++     al++l+ l ++ + fd++f+D
     CTQ27829.1  90 LTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLEAL-GECPAFDLIFID 141
                    679******************9987777777777777777.8889*******9 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.6e-05      0.19      13      79 ..      60     127 ..      51     140 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.6e-05
  Methyltransf_18  13 ekgsrvaDiGtDHgylpiylvkegkak.kviasDinegplekakeniekagledkievrlsdGleklk 79 
                      ++ +r++ iGt  gy +i++++e  a+ + +  +  ++  + a+en++ ag+++++++r +  l++l+
       CTQ27829.1  60 TQAKRILEIGTLGGYSTIWMARELPADgQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLE 127
                      45789****************998886367889******************************99987 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.25      11      77 ..      72     140 ..      62     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
  Methyltransf_15  11 aGGnviqfalv...fekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvfl 77 
                      +G  +i +a++     +  ++e + ++ ++a +N ++ gv++++tl  g  ++ l+ l +  + +dl+f+
       CTQ27829.1  72 GGYSTIWMARElpaDGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLEALGECPA-FDLIFI 140
                      666788888885543378999********************************9999766555.899986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1678.24
//
Query:       CTQ27830.1  [L=459]
Description: putative outer membrane efflux protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-45  153.3  37.7      2e-23   83.2  14.8    2.1  2  OEP            Outer membrane efflux protein
    0.00065   19.4   2.3     0.0013   18.4   2.3    1.5  1  YkyA           Putative cell-wall binding lipoprotein
     0.0099   14.6   0.2      0.019   13.6   0.2    1.5  1  CsoSCA         Carboxysome Shell Carbonic Anhydrase
  ------ inclusion threshold ------
      0.023   15.2   2.1        0.3   11.6   0.3    2.6  2  DUF16          Protein of unknown function DUF16
      0.068   13.4   0.3       0.17   12.1   0.3    1.7  1  MLTD_N         MltD lipid attachment motif
        2.6    8.3   8.1        1.8    8.8   1.2    2.3  2  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2  14.8   6.6e-27     2e-23       1     188 []      57     244 ..      57     244 .. 0.94
   2 !   76.4  14.9     8e-25   2.4e-21       2     188 .]     265     450 ..     264     450 .. 0.94

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 6.6e-27
         OEP   1 ldellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaql 99 
                 l++ +++al +n+d+++a+ +++  +a++ aa ++ +P+l++s+++ + +  s  +g     +    glt+s+ +  +g++r++ +aa a+lea++a  
  CTQ27830.1  57 LNQYVDQALRYNSDVLIARERVNEYQARAYAADSSLFPSLDASLTGTRARTQSAATGLPIHSTLYKGGLTASYDVDIWGANRSAANAAGASLEAQKAAA 155
                 7899*********************66666666666****************9887665554444********************************** PP

         OEP 100 eqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                 ++a +++++ va  y  ll++ eql++ +++l++ e+a++la+++++ G +s l+++qa+++l ++ra++   + q+++++++L+ llg
  CTQ27830.1 156 AAANLSVASSVAVGYVTLLSLDEQLRVTQQTLTSREDAWRLAKRQFETGYTSRLELMQADSELRSTRAQIPPLQHQIAQQENALSVLLG 244
                 ***************************************************************************************98 PP

  == domain 2  score: 76.4 bits;  conditional E-value: 8e-25
         OEP   2 dellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgtt..svgltlsqplfdggkrrarvkaakaqleaaeaq 98 
                 ++l ++ l+++pd+++ae ++ aa a+l+ ++a+ lP+++l+++++ ++ +  +  d++    +  s+g ++  pl++  + +a+v  + aq  +a + 
  CTQ27830.1 265 SQLPSTLLNRRPDIAQAERQLVAADATLASSQAQLLPSINLTATGSLQDRTLPDLLDNPL---RlwSLGGSILAPLLNRQALNAQVDVSMAQRNQALYS 360
                 689999*****************************************9999987765443...23467777777************************* PP

         OEP  99 leqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                 +e+++++   ev+ ++  +    eql  ++e+ + a+++l++a+ ry++G +s+ldvl+aq+ l++++++ ++ +++l la+  L+++lg
  CTQ27830.1 361 YEKTVRSAFKEVNDSLDAISRYGEQLSELQEQETVAQETLRIAQNRYRNGYSSYLDVLDAQRTLFSTQLSVVQVKNNLLLAQIDLYRALG 450
                 ***************************************************************************************998 PP

>> YkyA  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   2.3   4.5e-07    0.0013      53     136 ..     341     426 ..     337     445 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.5e-07
        YkyA  53 kklsdealenveeReellekekesieeakeefekikeeieei..edeelkkeaeelieameeryeaydklykaYkealeldkeLYe 136
                 ++l +++  ++ +R++ l ++++ + +a +e+++  + i+ +  + +el+++ +  +e++   ++ y + y++Y ++l+++++L++
  CTQ27830.1 341 QALNAQVDVSMAQRNQALYSYEKTVRSAFKEVNDSLDAISRYgeQLSELQEQETVAQETLRIAQNRYRNGYSSYLDVLDAQRTLFS 426
                 678889999********************************98767799999999999999999999******************6 PP

>> CsoSCA  Carboxysome Shell Carbonic Anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   6.5e-06     0.019       6      55 ..     352     401 ..     348     435 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.5e-06
      CsoSCA   6 eeenerLaeyekevkerFdrivpvLkeiaalqheedfveraqelareelg 55 
                 +++n++L++yek+v+++F+++ + L  i+ + ++    ++ +++a+e+l 
  CTQ27830.1 352 AQRNQALYSYEKTVRSAFKEVNDSLDAISRYGEQLSELQEQETVAQETLR 401
                 689**************************998887777777777777665 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.088   2.6e+02      32      62 ..     207     237 ..     164     246 .. 0.43
   2 ?   11.6   0.3   9.9e-05       0.3      32      79 ..     354     401 ..     339     424 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.088
                 BHHHHHHHHHHHH...HHHHHHHHHHHHHHH CS
       DUF16  32 nkqrLkkieakvdklgeqinkleqkvekqge 62 
                    +L + + ++++   qi  l++++ +q++
  CTQ27830.1 207 SRLELMQADSELRSTRAQIPPLQHQIAQQEN 237
                 2223333333333444444444444444444 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 9.9e-05
                 BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH... CS
       DUF16  32 nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln 79 
                  +q L   e++v++ ++++n   +++++ ge+++el+++    +e l 
  CTQ27830.1 354 RNQALYSYEKTVRSAFKEVNDSLDAISRYGEQLSELQEQETVAQETLR 401
                 6899********************************998766655554 PP

>> MLTD_N  MltD lipid attachment motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   5.7e-05      0.17      22      34 .]       6      18 ..       2      18 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.7e-05
      MLTD_N 22 alaaaalLaGCQS 34
                ala+ ++L+GCQS
  CTQ27830.1  6 ALAIVLALVGCQS 18
                79**********9 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.9     0.033        98      53     101 ..     178     235 ..     173     245 .. 0.57
   2 ?    8.8   1.2   0.00059       1.8      92     155 ..     363     422 ..     337     423 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.033
  Jnk-SapK_ap_N  53 eelreeleqLeteyerekelrkrae......eeleeiedqweeerke...lqekveql 101
                    e+lr + ++L+++ +  + +++++e       el++++ ++++ r +   lq +++q 
     CTQ27830.1 178 EQLRVTQQTLTSREDAWRLAKRQFEtgytsrLELMQADSELRSTRAQippLQHQIAQQ 235
                    5666666666666666666666666666655566666666665555422223333333 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00059
  Jnk-SapK_ap_N  92 kelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklheretellkklkelverqr 155
                    k+++++++++   n+ l+  ++ + +qls+l+e+e+  ++    +++r+++   ++ ++++ qr
     CTQ27830.1 363 KTVRSAFKEV---NDSLD-AISRYGEQLSELQEQETVAQETLRIAQNRYRNGYSSYLDVLDAQR 422
                    3333333333...33333.5558999999*********999999999***************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3345.22
//
Query:       CTQ27831.1  [L=361]
Description: putative multidrug resistance efflux pump [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-18   64.8   4.2    1.2e-14   54.9   0.4    2.7  2  HlyD_3           HlyD family secretion protein
    2.3e-17   63.0  11.3    5.2e-14   52.0   8.6    3.2  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    1.8e-12   46.9   0.5    2.4e-12   46.6   0.5    1.3  1  HlyD             HlyD membrane-fusion protein of T1SS
      1e-10   41.2  13.9    1.2e-10   41.1   0.3    4.0  4  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
      0.014   15.2   0.2        9.1    6.2   0.0    2.9  3  Biotin_lipoyl    Biotin-requiring enzyme
        7.2    6.5  10.5        2.2    8.1   3.7    3.2  4  DivIC            Septum formation initiator


Domain annotation for each model (and alignments):
>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.3    0.0002      0.61       5      52 ..      67     120 ..      63     169 .. 0.68
   2 !   54.9   0.4   3.9e-18   1.2e-14       2     106 .]     228     346 ..     227     358 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
      HlyD_3   5 pvdGvvvelnveegevvqagdelleiip....pdtllveakvpaadlgsik...k 52 
                  v G ++++nv+   +vq+g++l++i +    ++  +++a+++ +++++ +    
  CTQ27831.1  67 QVNGYITAVNVKDFAIVQPGEVLFQIDDriykQRVHQAQATLAMKEAAL-RnnlQ 120
                 58999*********************99877434444777777777665.43332 PP

  == domain 2  score: 54.9 bits;  conditional E-value: 3.9e-18
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisp.........tvdaktg...... 85 
                 + Ap +G++ +++v+ g +v+ag+ l +++pp++ +v a + +++l+ ++ +gq+vt+++d  ++ t  gk+++isp         ++d+ tg      
  CTQ27831.1 228 IIAPTGGQLGQISVRLGAYVSAGTHLTSLVPPQH-WVIANLKETQLAEVR-VGQPVTFTVDALNGETFHGKVQSISPatgvefsaiSPDNATGnfvkia 324
                 89****************************9988.**************7.**********99999***********7766665544455444466666 PP

      HlyD_3  86 .aykvevslenpekksiplkpG 106
                  +++v++++++ +++s +l+pG
  CTQ27831.1 325 qRIPVRITVNDGQNNSERLRPG 346
                 6899***************998 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   8.6   1.7e-17   5.2e-14      19     187 ..      61     303 ..      55     307 .. 0.78
   2 ?    1.2   0.0     0.058   1.7e+02     195     213 ..     327     348 ..     319     353 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 1.7e-17
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXX............................................. CS
    HlyD_D23  19 larvsarveGwveklyvnatgdkVkkGqpLae....lyspelvaaqeeyllalk............................................. 68 
                 ++ +s++v+G+++ ++v+     V+ G+ L++    +y + + +aq+ +    +                                             
  CTQ27831.1  61 TTFISPQVNGYITAVNVK-DFAIVQPGEVLFQiddrIYKQRVHQAQATLAMKEAalrnnlqqrksaeatiakneaalqnaraqnlkiqadlkriqqlta 158
                 56699*************.99**********85555799999****99988887888999888888888888888887777777777777777777777 PP

                 ..............XXXXXXXX.......................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  69 ..............akkklkkke......................lleaarerLrllgvseeqiaelektgkvqktvtvkapisGvVteknvreGqyvq 131
                               +                               +   r+ L++ +v +++ a+le  +   +++++ ap+ G   + +vr G yv+
  CTQ27831.1 159 dgslsirerdsaraS-------AaqgaadieqakaalemsrqdreSTIVNRDSLEA-DVASAK-AALELAQIDLQNTQIIAPTGGQLGQISVRLGAYVS 248
                 777777666555540.......0445555555666666544444333334444443.333333.4566666667899********************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 132 pgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiypt 187
                 +g+ l ++   ++ Wv+a++ e+qla v+vgq+v++tv+al+g+tf+Gkv+ i+p 
  CTQ27831.1 249 AGTHLTSLVPPQH-WVIANLKETQLAEVRVGQPVTFTVDALNGETFHGKVQSISPA 303
                 *********9877.***************************************996 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.058
                 XXXXXXX...XXXXXXXXXXXX CS
    HlyD_D23 195 vkvRiel...dNpdgkLkpgmf 213
                 + vRi++   +N++++L+pgm 
  CTQ27831.1 327 IPVRITVndgQNNSERLRPGMS 348
                 568888833359999*****96 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.5     8e-16   2.4e-12      12      79 ..      41     354 ..      19     355 .. 0.83

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 8e-16
                 E.................................................................................................. CS
                 x.................................................................................................. RF
        HlyD  12 a.................................................................................................. 12 
                 +                                                                                                  
  CTQ27831.1  41 Qlppftrhsqftdnayvrgqttfispqvngyitavnvkdfaivqpgevlfqiddriykqrvhqaqatlamkeaalrnnlqqrksaeatiakneaalqna 139
                 366666677777777777777777777777777777777777777777777777777777777777777777777778888888888888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  CTQ27831.1 140 raqnlkiqadlkriqqltadgslsirerdsarasaaqgaadieqakaalemsrqdrestivnrdsleadvasakaalelaqidlqntqiiaptggqlgq 238
                 888888888888888888888888888888888888888888888888888888888888888888888888899999999999999999999999999 PP

                 ..............................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSB......................EEEEEEEEE CS
                 ..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxx RF
        HlyD  13 ..............................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispd......................rvpvrvvve 59 
                                               et+l +vrvgqpv+ ++dA+++    +f+g+V +isp+                      r+pvr++v 
  CTQ27831.1 239 isvrlgayvsagthltslvppqhwvianlkETQLAEVRVGQPVTFTVDALNGE---TFHGKVQSISPAtgvefsaispdnatgnfvkiaqRIPVRITVN 334
                 999999999999999999999999999999***********************...9****************************************** PP

                 EEETTEEEESSSS-TTEEEE CS
                 xxxxxxxxxxxxxxxxxxxx RF
        HlyD  60 kaqgpyyplriglkagalvr 79 
                 + q ++  lr g++ +++++
  CTQ27831.1 335 DGQNNSERLRPGMSVQVTID 354
                 **************999887 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.3   3.9e-14   1.2e-10       3      50 .]      62     109 ..      60     109 .. 0.96
   2 ?   -2.4   0.4       1.5   4.5e+03      37      50 .]     114     130 ..     111     130 .. 0.75
   3 ?   -3.1   0.5       2.4   7.2e+03      37      44 ..     135     142 ..     131     151 .. 0.50
   4 !    8.3   0.1   0.00065       1.9       3      32 ..     226     255 ..     224     260 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 3.9e-14
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50 
                      + I+++v+G ++++nVkd   V+ G vL+++D+r ++ ++ qa+a+la
       CTQ27831.1  62 TFISPQVNGYITAVNVKDFAIVQPGEVLFQIDDRIYKQRVHQAQATLA 109
                      569******************************************986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.5
  Biotin_lipoyl_2  37 alqlalaq...aeaqla 50 
                      al++ l+q   aea++a
       CTQ27831.1 114 ALRNNLQQrksAEATIA 130
                      67788888778999885 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.4
  Biotin_lipoyl_2  37 alqlalaq 44 
                      alq+a aq
       CTQ27831.1 135 ALQNARAQ 142
                      44444444 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.00065
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGdvLae 32 
                      ++I ap+ G++ q+ V+ G +V aG  L  
       CTQ27831.1 226 TQIIAPTGGQLGQISVRLGAYVSAGTHLTS 255
                      78999********************87765 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0035        10      45      73 .]      64      92 ..      60      92 .. 0.88
   2 ?   -3.5   0.0       3.2   9.7e+03      30      46 ..     175     191 ..     173     194 .. 0.77
   3 ?    6.2   0.0     0.003       9.1      43      71 ..     226     254 ..     220     256 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0035
                   EEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 45 ieapkaGvvkeilvkeGdtvevgdllaki 73
                   i+ +++G+++ + vk+ + v+ g++l++i
     CTQ27831.1 64 ISPQVNGYITAVNVKDFAIVQPGEVLFQI 92
                   45567*********************987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.2
                    TSEEEEEECTTEEEEEE CS
  Biotin_lipoyl  30 gqvlaeveamKmemeie 46 
                     q  a +e  K+  e++
     CTQ27831.1 175 AQGAADIEQAKAALEMS 191
                    57778999999988875 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.003
                    EEEEBSSSEEEEEESSTTTEEE-TTCEEE CS
  Biotin_lipoyl  43 meieapkaGvvkeilvkeGdtvevgdlla 71 
                    ++i ap  G++ +i v  G+ v++g+ l 
     CTQ27831.1 226 TQIIAPTGGQLGQISVRLGAYVSAGTHLT 254
                    6899*********************9886 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.34     1e+03      64      78 ..      79      93 ..      71      95 .. 0.82
   2 ?    8.1   3.7   0.00074       2.2      12      51 ..     115     154 ..     106     167 .. 0.91
   3 ?   -1.1   0.1      0.55   1.6e+03      59      70 ..     182     193 ..     177     200 .. 0.74
   4 ?   -1.9   0.0      0.96   2.9e+03      15      34 ..     198     217 ..     195     225 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.34
                XXXXXXXXXXXXXXX CS
       DivIC 64 elglvkpgEtvyrvv 78
                ++  v+pgE+ +++ 
  CTQ27831.1 79 DFAIVQPGEVLFQID 93
                78899*******985 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00074
                 XXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  12 gkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                 + ++l+++k+ ++ ia+ +a l++ +a+n + +a +k+ +
  CTQ27831.1 115 LRNNLQQRKSAEATIAKNEAALQNARAQNLKIQADLKRIQ 154
                 67899*****************************999875 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.55
                 XXXXXXXXXXXX CS
       DivIC  59 erARselglvkp 70 
                 e+A+  l ++++
  CTQ27831.1 182 EQAKAALEMSRQ 193
                 677777777765 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.96
                 XXXHHHHHHHHHHHHHHHHH CS
       DivIC  15 gllaykqlkqeiaalqaela 34 
                 +++++ +l++++a  +a l+
  CTQ27831.1 198 TIVNRDSLEADVASAKAALE 217
                 67777888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1419  (0.0791455); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2573.89
//
Query:       CTQ27832.1  [L=550]
Description: Permeases of the major facilitator superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-08   34.2  43.8    1.3e-08   34.2  43.8    2.9  2  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.27   11.5   0.0       0.45   10.7   0.0    1.3  1  DUF3546          Domain of unknown function (DUF3546)
        5.3    6.8   9.8        2.4    8.0   0.1    3.6  4  IncD             Inclusion membrane protein D


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2  43.8   2.1e-12   1.3e-08       7     352 ..      49     438 ..      42     438 .. 0.70
   2 ?   -1.3   0.2      0.13   7.9e+02     148     174 ..     508     531 ..     490     546 .. 0.68

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 2.1e-12
       MFS_1   7 lsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpa 105
                   al+ ++++++l  +l+ ++ +  +ei +l ++y  + +  +l+l  + + fG r +    l+l++l +++ lf++ l   + +r+  G+ a+al ++
  CTQ27832.1  49 TGALGNAVVTANLQ-LLQGTFAAWSTEIAWLPAVYVMTNVSINLLLVKFRQQFGLRAFTEGFLVLYVLVTFFHLFVNDLSSAMMVRAAHGMVAAALSSL 146
                 44566666777777.9*****************************************999999999999566668555559****************** PP

       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee................ 188
                 g+++ ++ +p ++r +++ +  +g+sl++ l+ l++  l++   Wr+++++  +++l+++ ++ + l  +p++rk++ +k++                 
  CTQ27832.1 147 GIYYQVQAWPARHRLKGLTIGITGSSLAIPLARLFSTELLQTDEWRGLYFFELGLALVSLACV-IALKLPPSDRKKVFEKKDFitffllapgmalvcav 244
                 ****************************************9999***************8863.44445555555554444448*************** PP

       MFS_1 189 ......kgtgpaplvp..............awkallkdpvl...w.....illialllfffgfsglltllplylqevlgls...glllaglllallalv 256
                       +++++ap++                +++ +++p l   w     i+ ++l++    + ++l+   +    v g+    g l++  +  l++ +
  CTQ27832.1 245 lslgrlEWWFEAPWIGwalaaavilivaaiTFEHNRSNPLLntkWlssgsIVRLGLIML--LIRIVLAEQNT---GVIGWLqyvG-LQNEQMTNLAWSI 337
                 ******99999999998888888999999999999999988777666654222222222..22222222222...2223334432.2222222222222 PP

       MFS_1 257 gail..allagrlsdrlgrrrrlllallllllaalglallavt..ssavllll.vlvliGfglgfv..fpsllalasdlappeeagtasglfntagslg 348
                 +a++  +++a+ l   l++++  + +  +l+l+ ++ +l + +   + +  l+ + +l+Gfg++f+   ++l+ +   +a p++  + s lf++ +++g
  CTQ27832.1 338 FAGIlcGIIASCLT--LNPQKLYWPTATALALIMIASLLDSQSnaLTRPEQLMfSQFLLGFGSAFFlaPAMLAGIGGVFADPRNLVSFSVLFGMSQNIG 434
                 22220022333333..334333333333333333333333333343333344435556777666665477777788888899***************** PP

       MFS_1 349 galg 352
                 g+lg
  CTQ27832.1 435 GLLG 438
                 *997 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.13
       MFS_1 148 lgWravfyilaivsllafvlfllllpe 174
                 l W  ++++ a++s+  +v   +++++
  CTQ27832.1 508 LAWNDTYLLTAAISAGTLV---WVFWR 531
                 3477777777777777766...33332 PP

>> DUF3546  Domain of unknown function (DUF3546)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.6e-05      0.45      46      91 ..     449     494 ..     445     506 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.6e-05
     DUF3546  46 rekYhPeelakrkeelrellkkrlevFlellesgvfdevsleadns 91 
                 rek+h  +la+    l+ l+ +rl++++++++s + d+  l+++ +
  CTQ27832.1 449 REKFHSSQLADQITTLNPLIVERLQQYSQMYQSQIGDSTLLNVQAT 494
                 9**********************************99999886655 PP

>> IncD  Inclusion membrane protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       0.8   4.8e+03      68      93 ..      32      59 ..      23      63 .. 0.64
   2 ?   -2.5   0.1      0.69   4.1e+03      66      79 ..     330     343 ..     300     352 .. 0.59
   3 ?    3.7   0.4    0.0084        50      44      90 ..     361     410 ..     356     411 .. 0.84
   4 ?    8.0   0.1    0.0004       2.4      59     105 ..     411     456 ..     407     464 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.8
        IncD 68 vlaaslffgvgafl..lggalvggvltt 93
                  a  l +gv  +l  l gal   v+t+
  CTQ27832.1 32 SPAKRLAYGVVGLLvcLTGALGNAVVTA 59
                4466677777665533678887777775 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.69
        IncD  66 vsvlaaslffgvga 79 
                 ++ la s+f g+ +
  CTQ27832.1 330 MTNLAWSIFAGILC 343
                 44444444444432 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.0084
        IncD  44 tilavallvvagllf..sgvlcspvsvlaaslffgvg.afllggalvggv 90 
                 t  a+al+++a ll   s  l  p  ++ + +++g g af+l  a++ g+
  CTQ27832.1 361 TATALALIMIASLLDsqSNALTRPEQLMFSQFLLGFGsAFFLAPAMLAGI 410
                 567899*******962257899*****99999999986799999998885 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0004
        IncD  59 sgvlcspvsvlaaslffgvgafllggalvggvltteavtrerlhrsq 105
                  gv++ p  +++ s++fg+    +gg l   +l t    re++h sq
  CTQ27832.1 411 GGVFADPRNLVSFSVLFGMSQ-NIGGLLGSAILGTFQTWREKFHSSQ 456
                 69999*************986.579999999**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3845.94
//
Query:       CTQ27833.1  [L=143]
Description: putative bacterial regulatory protein, MarR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-11   42.7   0.2    9.7e-11   41.4   0.2    1.7  1  MarR_2          MarR family
    7.8e-11   41.7   0.0    1.5e-10   40.9   0.0    1.4  1  MarR            MarR family
    2.6e-09   37.4   0.2      7e-09   36.1   0.0    1.8  2  HTH_27          Winged helix DNA-binding domain
    4.5e-07   29.6   0.7    8.8e-07   28.6   0.2    1.8  2  HTH_IclR        IclR helix-turn-helix domain
    3.5e-05   23.4   1.7     0.0005   19.7   0.2    2.4  2  GntR            Bacterial regulatory proteins, gntR family
    0.00019   21.2   0.1    0.00086   19.1   0.0    2.0  2  TrmB            Sugar-specific transcriptional regulator TrmB
    0.00019   21.1   2.7    0.00061   19.4   0.2    2.0  2  SMC_ScpB        Segregation and condensation complex subunit 
     0.0032   17.4   0.0     0.0077   16.2   0.0    1.6  1  HTH_11          HTH domain
     0.0033   17.3   0.2     0.0033   17.3   0.2    1.9  2  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0098   15.9   0.0      0.017   15.1   0.0    1.5  1  Dimerisation2   Dimerisation domain
  ------ inclusion threshold ------
      0.014   15.8   0.4      0.053   13.9   0.0    2.0  2  Rrf2            Transcriptional regulator
      0.017   14.9   0.0      0.047   13.5   0.0    1.7  1  LexA_DNA_bind   LexA DNA binding domain
      0.018   14.6   0.2       0.46   10.1   0.0    2.7  2  HTH_24          Winged helix-turn-helix DNA-binding
      0.018   15.0   0.1      0.052   13.5   0.0    1.8  2  HTH_45          Winged helix-turn-helix
      0.025   14.8   0.0      0.061   13.5   0.0    1.6  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.03   14.3   0.5        0.1   12.6   0.1    2.0  3  Dimerisation    Dimerisation domain
      0.035   14.1   0.1       0.28   11.2   0.1    2.2  2  HTH_37          Helix-turn-helix domain
      0.045   13.7   0.0      0.089   12.8   0.0    1.6  1  PadR            Transcriptional regulator PadR-like family
      0.053   13.4   0.0      0.098   12.5   0.0    1.5  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
      0.087   12.7   1.6       0.25   11.2   0.1    2.1  2  HxlR            HxlR-like helix-turn-helix
       0.09   12.8   0.0       0.21   11.5   0.0    1.7  1  HTH_36          Helix-turn-helix domain
       0.13   12.3   1.6       0.26   11.4   0.5    1.9  2  HTH_20          Helix-turn-helix domain
       0.14   12.4   0.0       0.17   12.1   0.0    1.4  1  B-block_TFIIIC  B-block binding subunit of TFIIIC


Domain annotation for each model (and alignments):
>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.2   1.2e-13   9.7e-11       1      61 [.      30      89 ..      30      90 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1.2e-13
                TT--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2  1 lgltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61
                lgl+ a + + a ++r+  + l+++ela++lg++ +++  ++ rLva GLver +   DkR
  CTQ27833.1 30 LGLSQASWVAVASIARHQQP-LSQSELAQELGVESPTIVPLIHRLVALGLVERITTASDKR 89
                699999999*********98.*********************************9999**9 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   1.9e-13   1.5e-10       1      58 [.      32      90 ..      32      90 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 1.9e-13
                --HHHHHHHHHHHHSTT.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR  1 ltltqfviLrilyeqgp.lsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58
                l+++ +v++++++++++ ls+seLa  lgv+++t+  +++rL+  Gl+eR    +D+R+
  CTQ27833.1 32 LSQASWVAVASIARHQQpLSQSELAQELGVESPTIVPLIHRLVALGLVERITTASDKRK 90
                788999999999888766****************************************6 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0     9e-12     7e-09       3      68 .]      34      99 ..      32      99 .. 0.94
   2 ?   -1.7   0.0       5.6   4.4e+03      28      44 ..     122     138 ..     109     139 .. 0.65

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 9e-12
      HTH_27  3 rqqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68
                +  ++ + +i++ + + ++++l++ l ve+ +i+  + +L++ GLver + + d+r +++ +TdkG
  CTQ27833.1 34 QASWVAVASIARHQQPLSQSELAQELGVESPTIVPLIHRLVALGLVERITTASDKRKRLLVVTDKG 99
                56688899999999***************************************************9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 5.6
      HTH_27  28 lnvedshisyslkkLte 44 
                 +  e+ ++  +l+kL +
  CTQ27833.1 122 TPQEQEQTQRVLEKLLR 138
                 44566677777777765 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.2   1.1e-09   8.8e-07      12      50 ..      43      81 ..      40      83 .. 0.96
   2 ?   -2.6   0.0       6.3   4.9e+03       8      19 ..     117     128 ..     116     135 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.1e-09
                -CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 12 laeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                +a+++q+l+ selA+++g+  +t   l++ Lv lG+ve+
  CTQ27833.1 43 IARHQQPLSQSELAQELGVESPTIVPLIHRLVALGLVER 81
                8************************************98 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.3
                 HHCT-CTTBSS- CS
    HTH_IclR   8 iLdalaeapqel 19 
                 iL a++ + qe 
  CTQ27833.1 117 ILTAITPQEQEQ 128
                 888888888874 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   6.4e-07    0.0005      19      57 ..      45      82 ..      40      86 .. 0.92
   2 ?    2.9   0.1      0.11        85       3      19 ..     107     123 ..     105     138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.4e-07
                -TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        GntR 19 rpGdkLPsereLaaefgVsrttvReALrrLeaeglverr 57
                r+ ++L s++eLa+e+gV  +t+   + rL+a glver 
  CTQ27833.1 45 RHQQPL-SQSELAQELGVESPTIVPLIHRLVALGLVERI 82
                67899*.******************************97 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHTTSS- CS
        GntR   3 eqvyerLredIlsgelr 19 
                 ++v++ Lre+Il+  + 
  CTQ27833.1 107 KTVADDLREEILTAITP 123
                 789********996554 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.1e-06   0.00086       1      57 [.      27      84 ..      27     109 .. 0.83
   2 ?    0.1   0.1      0.99   7.7e+02      35      48 ..     125     138 ..     100     139 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.1e-06
                HHHCHHHHHCCCHCHHHH.HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB  1 LqklGLseyEakvYlaLl.klgpatadeiaeelgvprskvYevLrsLedkGlVerekg 57
                L+ lGLs+    + + +   ++p++ +e+a+elgv+ +++   + +L+  GlVer+  
  CTQ27833.1 27 LKNLGLSQASWVAVASIArHQQPLSQSELAQELGVESPTIVPLIHRLVALGLVERITT 84
                66778888888888888877899********************************975 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.99
                 SCHCHHHHHHHHHH CS
        TrmB  35 prskvYevLrsLed 48 
                 ++ + ++vL++L++
  CTQ27833.1 125 EQEQTQRVLEKLLR 138
                 56678899999975 PP

>> SMC_ScpB  Segregation and condensation complex subunit ScpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.2   7.9e-07   0.00061      77     144 ..      28      98 ..      12     111 .. 0.82
   2 ?    2.3   0.3      0.15   1.2e+02      12      43 ..     111     142 ..     101     143 .] 0.83

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.9e-07
    SMC_ScpB  77 kktrLsqaaletLaiIaykq.pvtraeieeiRGvnsdsv...vrtLlerglieekgrkeepgrpilYgtTek 144
                 k+  Lsqa+   +a Ia +q p++++e+++  Gv+s ++   +++L++ gl+e+  +++   r  l+ +T+k
  CTQ27833.1  28 KNLGLSQASWVAVASIARHQqPLSQSELAQELGVESPTIvplIHRLVALGLVERITTAS-DKRKRLLVVTDK 98 
                 45689*****99999997655**************988623368**********99775.567888888886 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.15
    SMC_ScpB  12 eplsleeLakilelskeeveealeeLkeeyee 43 
                 ++l+ e L +i+  ++e+++++le+L +e e+
  CTQ27833.1 111 DDLREEILTAITPQEQEQTQRVLEKLLREVEK 142
                 5677888999998889*********9999865 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   9.9e-06    0.0077      11      43 ..      45      77 ..      40      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.9e-06
      HTH_11 11 eargpisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                ++++p+s +eLA+eL+v   t++  I +L +lg
  CTQ27833.1 45 RHQQPLSQSELAQELGVESPTIVPLIHRLVALG 77
                57788************999**99999999988 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   4.3e-06    0.0033      19      53 ..      47      83 ..       9     100 .. 0.76
   2 ?   -2.6   0.2       7.5   5.8e+03      36      46 ..     127     137 ..     125     139 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.3e-06
                EEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE..E CS
   HTH_Crp_2 19 elpltqeelAsmlGltretvsrilseLkreglis..r 53
                + pl+q elA+ lG+   t+  ++++L   gl++  +
  CTQ27833.1 47 QQPLSQSELAQELGVESPTIVPLIHRLVALGLVEriT 83
                569******************************9531 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.5
                 HHHHHHHHHHH CS
   HTH_Crp_2  36 etvsrilseLk 46 
                 e++ r+l +L 
  CTQ27833.1 127 EQTQRVLEKLL 137
                 77788888775 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.1e-05     0.017      26      69 ..      43      86 ..      31     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.1e-05
  Dimerisation2 26 lLkeeeplsaeevaeelgasvkGterLldacvaLgLLerekkee 69
                   + ++++pls +e+a+elg+++  +  L++ +vaLgL er ++ +
     CTQ27833.1 43 IARHQQPLSQSELAQELGVESPTIVPLIHRLVALGLVERITTAS 86
                   55668********************************9875544 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.8e-05     0.053      13      56 ..      39      80 ..      31      83 .. 0.88
   2 ?   -0.8   0.1       2.5     2e+03      34      51 ..     125     142 ..     114     143 .] 0.74

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.8e-05
                HHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        Rrf2 13 allyLakeeeeepvsseeiaerqnispsylekilakLrkaglvk 56
                a++ +a++++  p+s +e+a++ +++ + +  ++++L   glv+
  CTQ27833.1 39 AVASIARHQQ--PLSQSELAQELGVESPTIVPLIHRLVALGLVE 80
                5667777777..8******************************8 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.5
                 HHTS-HHHHHHHHHHHHH CS
        Rrf2  34 rqnispsylekilakLrk 51 
                 +q+  +++lek+l++ +k
  CTQ27833.1 125 EQEQTQRVLEKLLREVEK 142
                 566677888888887665 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     6e-05     0.047      16      62 ..      40      85 ..      35      87 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6e-05
                   HHHHHHHSS---HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GGG- CS
  LexA_DNA_bind 16 kasieetgypPsireiaralglkSpsaveehLkaLerKGyierdpgk 62
                   +asi +++ p s  e+a++lg++Sp  v    ++L   G++er  ++
     CTQ27833.1 40 VASIARHQQPLSQSELAQELGVESPTIVP-LIHRLVALGLVERITTA 85
                   68999*******************97654.34555555888877665 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.29   2.3e+02      33      41 ..      22      30 ..      22      31 .. 0.91
   2 ?   10.1   0.0   0.00059      0.46      17      34 ..      49      66 ..      42      80 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.29
      HTH_24 33 tvnrrlkrL 41
                +vnrrlk+L
  CTQ27833.1 22 AVNRRLKNL 30
                69*****98 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00059
      HTH_24 17 risqreLAerlglSpstv 34
                 +sq+eLA++lg+ ++t+
  CTQ27833.1 49 PLSQSELAQELGVESPTI 66
                59***********99987 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.7e-05     0.052      35      73 ..      65     110 ..      43     114 .. 0.83
   2 ?   -1.1   0.0       2.5   1.9e+03      10      24 ..     116     130 ..     111     138 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.7e-05
      HTH_45  35 llnkYLdmLvekgli.......kkskekYvlTekGlelleklkele 73 
                 ++   ++ Lv  gl+       +k+k   v+T+kG+ l+e++k++ 
  CTQ27833.1  65 TIVPLIHRLVALGLVerittasDKRKRLLVVTDKGKALYEQVKTVA 110
                 556678999999**9999999888999**************99886 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.5
      HTH_45  10 dILeaisegeakkTk 24 
                 +IL ai  +e+++T+
  CTQ27833.1 116 EILTAITPQEQEQTQ 130
                 799999888888886 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.9e-05     0.061      20      53 ..      47      80 ..      40      83 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.9e-05
                    HSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 20 kkvvktkdlaerLnvspssVsemlkkLekdGyve 53
                    +++ ++++la++L+v+ +++   + +L   G+ve
      CTQ27833.1 47 QQPLSQSELAQELGVESPTIVPLIHRLVALGLVE 80
                    677899************************9997 PP

>> Dimerisation  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00013       0.1      15      46 ..      43      73 ..      41      76 .. 0.92
   2 ?   -1.6   0.0       3.6   2.8e+03       9      19 ..      76      86 ..      71      89 .. 0.75
   3 ?   -2.4   0.0       6.3   4.9e+03      27      39 ..     116     128 ..     115     138 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00013
  Dimerisation 15 iakaggkplspsEiaskLptknpeapvlldRl 46
                  ia +  +pls sE+a+ L    p+  +l++Rl
    CTQ27833.1 43 IARHQ-QPLSQSELAQELGVESPTIVPLIHRL 73
                  88997.*************99**********9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.6
  Dimerisation  9 Lglldiiakag 19
                  Lgl + i++a 
    CTQ27833.1 76 LGLVERITTAS 86
                  88888888775 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 6.3
  Dimerisation  27 EiaskLptknpea 39 
                   Ei +++  + +e 
    CTQ27833.1 116 EILTAITPQEQEQ 128
                   6666666433333 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.58   4.5e+02      21      43 ..      21      43 ..      15      45 .. 0.79
   2 ?   11.2   0.1   0.00036      0.28      27      51 ..      45      69 ..      33      76 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.58
                HHHHHHHHHCT--HHHHHHHHT- CS
      HTH_37 21 laiaeliekrelsqseaaqllgi 43
                la+++ ++ ++lsq+   +   i
  CTQ27833.1 21 LAVNRRLKNLGLSQASWVAVASI 43
                469999********987766655 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00036
                HHHCT--HHHHHHHHT--HHHHHHH CS
      HTH_37 27 iekrelsqseaaqllgiaqPkvsrl 51
                + ++ lsqse+aq lg+  P ++ l
  CTQ27833.1 45 RHQQPLSQSELAQELGVESPTIVPL 69
                34577***************99876 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00011     0.089      30      73 ..      62     103 ..      47     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
                 THHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHH CS
        PadR  30 seGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrel 73 
                 +  ++ p+ +rL + glve+  +   +++++++  +Td+G++ +
  CTQ27833.1  62 ESPTIVPLIHRLVALGLVERITTA--SDKRKRLLVVTDKGKALY 103
                 5567889************99876..59999*********9876 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00013     0.098      10      45 ..      51      84 ..      43      91 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00013
  YdaS_antitoxin 10 gqkaLAealgvsqqaVsqWlkgkkqvpaervpeIek 45
                    +q++LA++lgv ++++  +++  + v    v  I  
      CTQ27833.1 51 SQSELAQELGVESPTIVPLIH--RLVALGLVERITT 84
                    8***************99997..5566666666655 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00033      0.25      21      81 ..      52     111 ..      34     121 .. 0.85
   2 ?    0.8   0.2      0.55   4.3e+02      31      45 ..     128     142 ..     114     143 .] 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00033
                 HHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHH CS
        HxlR  21 fselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkk 81 
                  sel+++l ++   +++  +++L + gl+er +  +   k    +t+kG++l++ ++++++
  CTQ27833.1  52 QSELAQEL-GVESPTIVPLIHRLVALGLVERITTASDKRKRLLVVTDKGKALYEQVKTVAD 111
                 57888888.788889999999********************************99998765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.55
                 S-HHHHHHHHHHHHH CS
        HxlR  31 isqkmLaqrLreLeq 45 
                  +q++L + Lre e+
  CTQ27833.1 128 QTQRVLEKLLREVEK 142
                 5899*******9986 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00027      0.21      27      55 .]      51      79 ..      33      79 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00027
      HTH_36 27 sqetlakrlglsknTvsraikeLeqlGyi 55
                sq+ la+ lg+   T++  i  L+ lG++
  CTQ27833.1 51 SQSELAQELGVESPTIVPLIHRLVALGLV 79
                8**************************85 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   0.00033      0.26       4      58 ..      12      83 ..       9      85 .. 0.92
   2 ?   -1.0   0.0       2.4   1.9e+03       7      31 ..     109     134 ..     104     140 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00033
                HHHHS-HHHHHHHHHH.................STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20  4 aeALahPvRrrilraL.................araegltaselaerldlskntlsyHLrvLeeagLvevvr 58
                ++++ah  R+++ r L                 +  ++l+ sela++l++   t+   ++ L+  gLve+ +
  CTQ27833.1 12 LYLTAHHWRLAVNRRLknlglsqaswvavasiaRHQQPLSQSELAQELGVESPTIVPLIHRLVALGLVERIT 83
                6889999999999999999999999999999999*********************9999999999**99976 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.4
                 HS-HHHHHHHHHH.STCTTB-HHHHH CS
      HTH_20   7 LahPvRrrilraL.araegltasela 31 
                 +a+  R +il a+ ++++++t   l 
  CTQ27833.1 109 VADDLREEILTAItPQEQEQTQRVLE 134
                 66777777777776556555544444 PP

>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00022      0.17      19      56 ..      50      86 ..      33     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00022
  B-block_TFIIIC 19 itqsdLakeskqdprslfyrlksLekkgLIvkqsiids 56
                    + qs+La+e++ ++  +  ++  L   gL++++++  s
      CTQ27833.1 50 LSQSELAQELGVESPTIVPLIHRLVALGLVERITTA-S 86
                    78*******************************994.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1158  (0.0645881); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1038.50
//
Query:       CTQ27834.1  [L=315]
Description: Transcriptional regulator, LysR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-29  103.1   0.0    1.9e-29  102.5   0.0    1.2  1  LysR_substrate  LysR substrate binding domain
    3.7e-19   68.4   0.7    8.2e-19   67.3   0.3    1.8  2  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0011   19.1   0.0     0.0018   18.3   0.0    1.4  1  HTH_28          Helix-turn-helix domain
     0.0027   17.5   0.1     0.0051   16.6   0.1    1.4  1  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.033   14.1   0.0      0.059   13.3   0.0    1.4  1  MarR            MarR family
      0.045   13.3   0.1        0.1   12.2   0.1    1.6  1  HTH_24          Winged helix-turn-helix DNA-binding
        0.1   12.5   0.0       0.19   11.7   0.0    1.3  1  MarR_2          MarR family
       0.18   11.8   0.0       0.29   11.2   0.0    1.4  1  DUF2089         Protein of unknown function (DUF2089)


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   8.5e-33   1.9e-29       4     207 ..      93     297 ..      91     299 .. 0.93

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 8.5e-33
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEE.EEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLa.eeplvlvaspdhpLargepvs 97 
                     ++g +++  p  +   ++ +   +f+++ P+v+lel ++d  + ++ +++g +D++ir+ +  + +++a p++ +  l++vaspd+  ++gep +
      CTQ27834.1  93 PEGVVKVNLPRIVIDLFFQDYFIAFKNACPNVTLELYATD--RKVNIIESG-FDAGIRYSQDVPKEMIAIPFGeKLSLIPVASPDYIREAGEPDT 184
                     789999**********************************..*********.*********************999**********5555***** PP

                     GGGGCTSEEEEE..STTSTHHHHHHHHHHCT.TEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEE CS
  LysR_substrate  98 ledLadeplill..eegsglrdlledalrea.glkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyr 188
                     ++ L ++++i +  + g  +r+++    +e  ++++++ l v+  +a+++++++GlGia++ +s+v + l +g lv   lp++++p  +++++y+
      CTQ27834.1 185 PQSLVNFRCINRcfPGGEKYRWEFIGPSGELsEVAVKGDLVVDADSAMIQAAESGLGIAFVYQSLVTQQLSAGSLV-HLLPDYRYPaDHFCVYYP 278
                     **********9743555558888888777777********************************************.****************** PP

                     TTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidflrea 207
                     ++++ ++ +rafi+++ ++
      CTQ27834.1 279 SRKHIPAPLRAFIAWVMAQ 297
                     ***************9875 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.3   3.6e-22   8.2e-19       1      60 []       7      66 ..       7      66 .. 0.98
   2 ?   -2.9   0.0       3.1     7e+03      31      44 ..     230     243 ..     224     254 .. 0.74

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 3.6e-22
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l+q+++++ ++++gsf++AA++L+ls+pa++ +i+ LEe lgv+L++R++r+l+LT+ Ge
  CTQ27834.1  7 LQQIEILILIVKHGSFRQAAKALNLSPPALTVAINHLEEKLGVRLLNRSTRSLSLTAVGE 66
                689******************************************************997 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.1
                 HHHHHHHHHHHTS- CS
       HTH_1  31 srqikrLEeelgvp 44 
                 s++i++ E+ lg  
  CTQ27834.1 230 SAMIQAAESGLGIA 243
                 66778888777754 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   8.1e-07    0.0018       2      50 ..       9      57 ..       8      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.1e-07
      HTH_28  2 RleiikllaaGhsvreaArelgisrrtvyrWikryee.gGiagLvprrrr 50
                 +ei+ l+ +++s r+aA++l++s+  + + i+ +ee  G+  L++r+ r
  CTQ27834.1  9 QIEILILIVKHGSFRQAAKALNLSPPALTVAINHLEEkLGV-RLLNRSTR 57
                589**********************************8996.77777765 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   2.3e-06    0.0051      10      51 ..      17      58 ..      11      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.3e-06
                HTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHH CS
      HTH_30 10 enggnisatAkaLhvHrnTlryRLrrieellgldlddpddrl 51
                  +g+ +++AkaL++++  l+  ++++ee lg+ l + ++r 
  CTQ27834.1 17 VKHGSFRQAAKALNLSPPALTVAINHLEEKLGVRLLNRSTRS 58
                56799*******************************999885 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.6e-05     0.059       4      44 ..       8      46 ..       6      46 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.6e-05
                HHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHT CS
        MarR  4 tqfviLrilyeqgplsvseLakklgvskstvtrvldrLekk 44
                +q++iL ++  +g+ +++  ak+l++s++++t ++ +Le+k
  CTQ27834.1  8 QQIEILILIVKHGSFRQA--AKALNLSPPALTVAINHLEEK 46
                799999999999999988..9******************97 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   4.5e-05       0.1      19      44 ..      21      46 ..       6      46 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.5e-05
      HTH_24 19 sqreLAerlglSpstvnrrlkrLeee 44
                s r+ A++l+lSp++++  ++ Lee+
  CTQ27834.1 21 SFRQAAKALNLSPPALTVAINHLEEK 46
                78999*******************96 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.4e-05      0.19       5      48 ..       7      46 ..       3      47 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.4e-05
                HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHT CS
      MarR_2  5 paqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaa 48
                ++q  +L  +  ++    + ++ a++l+ls++a++ +++ L+++
  CTQ27834.1  7 LQQIEILILIVKHG----SFRQAAKALNLSPPALTVAINHLEEK 46
                67888999999998....99*********************986 PP

>> DUF2089  Protein of unknown function (DUF2089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.29      38      84 ..       8      54 ..       1      98 [. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
     DUF2089 38 qlefvelfikarGnlkevekelgisYpTvrnrldeileaLgyeeeee 84
                q+  + ++i ++G++++ +k+l++s p++   ++++ e+Lg++  ++
  CTQ27834.1  8 QQIEILILIVKHGSFRQAAKALNLSPPALTVAINHLEEKLGVRLLNR 54
                55557788999******************************987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2475.91
//
Query:       CTQ27835.1  [L=332]
Description: putative aldo-keto reductase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-79  264.9   0.0    9.4e-79  264.7   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.7   0.0   5.2e-83   9.4e-79       2     292 ..      16     311 ..      15     312 .. 0.96

  Alignments for each domain:
  == domain 1  score: 264.7 bits;  conditional E-value: 5.2e-83
                   EEEE-SSS-ST..TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE........--SSSTTSSSS-HHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgsk.eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv........dlrdaeiksglskenires 89 
                   lglG + ++   +  + ++a++++++a++ G++f+DtAevYg+  +e l+G+a+k     r++v iatK         ++   +  ++ ++++ires
    CTQ27835.1  16 LGLGCMGMSFAyGGAETSQAINTIHAAMDMGVTFLDTAEVYGPFDNEVLVGKAIKG---FRDKVQIATKFgfrilptgQGLERMAGVDSRPAHIRES 109
                   89******9999********************************************...***********7777777777777777777777***** PP

                   HHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EE CS
  Aldo_ket_red  90 leeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpl 186
                   +e slkrL+++++Dll+ Hr+dp++p +eev++++++lvkeGkir+iG+S++s++ l++a   k+++i+avq ey+l++++ e+g+l +c+++gv++
    CTQ27835.1 110 VEGSLKRLNVETIDLLYQHRVDPAVP-VEEVVGTMADLVKEGKIRHIGLSEVSAQTLRRA--CKVHPIAAVQTEYSLWSREPEAGILHTCRELGVGF 203
                   **************************.*******************************99..9********************************** PP

                   EEBSTTGGGTTGTTTSS---SSSCCC-------..TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG--- CS
  Aldo_ket_red 187 iaysplggGlltgkyqseedkedkeprkdlkrd..ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelkl 281
                   ++ysplg+G+ltg  ++++    ++ r++l r+  e+++kn++++e+l+++a  ++ +laq+al++++s+   +++ipga++i++l+dn++a +++l
    CTQ27835.1 204 VPYSPLGRGFLTGTITDPGVLSADDFRRHLPRFqaETMRKNQLLLERLQQVATRYDATLAQIALAWVMSKGEDIVPIPGARKIAHLRDNAGAANITL 300
                   ********************************9**************************************************************** PP

                   -HHHHHHHHHH CS
  Aldo_ket_red 282 seeevaeldel 292
                    +e++ +++ +
    CTQ27835.1 301 APEDILTIEHI 311
                   *****999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2684.69
//
Query:       CTQ27836.1  [L=424]
Description: Glutamate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-73  247.5   0.3      2e-73  247.1   0.3    1.1  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
      1e-54  183.9   0.0    1.9e-54  183.0   0.0    1.5  1  ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation 
    8.2e-05   22.0   0.4    0.00015   21.2   0.4    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
  ------ inclusion threshold ------
      0.015   14.6   0.4      0.025   13.9   0.4    1.2  1  ThiF             ThiF family
      0.072   12.8   0.1          3    7.5   0.0    2.4  2  Ad_Cy_reg        Adenylate cyclase regulatory domain
      0.081   13.0   0.2       0.19   11.8   0.2    1.6  1  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin
      0.099   13.1   0.2       0.17   12.3   0.2    1.6  1  NAD_binding_7    Putative NAD(P)-binding
       0.16   11.2   1.5       0.29   10.4   1.5    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.1   0.3   8.7e-77     2e-73       1     243 []     188     420 ..     188     420 .. 0.98

  Alignments for each domain:
  == domain 1  score: 247.1 bits;  conditional E-value: 8.7e-77
                    T--TTTTTHHHHHHHHHHHHHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE-HHHHHHHHHCSSSSTTHSHHS CS
  ELFV_dehydrog   1 GGsldrpeaTglGvvyyveemlkklkldslegkrvaisGsGnvgsyaallltelgakvvavsDssGviydpeGldieellelkeerksvkeykkss 96 
                    GGsl+r++aTg+Gv+++ +e++++++++ +eg++va +G+Gnvgs aa+l++  ga++v ++D++ ++y++ G+d+++l+++++e+k+++ ++   
     CTQ27836.1 188 GGSLGREKATGRGVFVTGREVARRAGIE-IEGAKVALQGFGNVGSEAARLFAGVGARIVVIQDHTATLYNEGGIDMAALTAWQAEKKQIAGFP--- 279
                    9***********************9999.****************************************************************... PP

                    TSTSEEESHHSHHHHSS-SEEEE-SSTTSB-HHHHTHTHHTT-SEEE-SSSS-B-HHHHHHHHHTT-EEE-HHHHTTHHHHHHHHHHHHHHCT--- CS
  ELFV_dehydrog  97 ekkaeyieneeellelkvdilvPcAtqneideenakalikngvklvvEgANlpttqeAkeileeagvlvvpdkaaNaGGVtvSslEmlqnlarlsw 192
                      +a+ i+++  ++++++dil+P+A++ +i++e+a+ +++  +klv+EgAN+pt +eA+++l e+gv+vvpd+++NaGGVtvS++E++q++a+++w
     CTQ27836.1 280 --GAQEIDKD-AFWTTPMDILIPAALEGQITRERAE-KLT--CKLVLEGANGPTYPEADDVLAERGVIVVPDVICNAGGVTVSYFEWVQDMASFFW 369
                    ..46899997.*************************.666..****************************************************** PP

                    -HHHHHHHHHHHHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHHCT CS
  ELFV_dehydrog 193 teeevdeklkkimkeifkavveeaeeykqelvkganiagfekvaeamkaqG 243
                    +eee+++k+++im++++ +v+++a e++++l+++a+i+++e++  a+k++G
     CTQ27836.1 370 SEEEINAKMDRIMTDAIVHVWDKAAEKECTLRTAAYIVACERILMARKDRG 420
                    ************************************************998 PP

>> ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.0   0.0   8.6e-58   1.9e-54       1     130 []      42     170 ..      42     170 .. 0.99

  Alignments for each domain:
  == domain 1  score: 183.0 bits;  conditional E-value: 8.6e-58
                      -SEEEEEEEEEE-TTSBEEEEEEEEEEEE-TTSSEEEEEEEETT--HHHHHHHHHHHHHHHHHTTSS-EEEEEEEES-GGGS-HHHHHHHHHHH CS
  ELFV_dehydrog_N   1 pervlqvtvpvkrdnGelevikgyraqhssalgPakGGiRfhpsvnldevkaLaalmtyKnalvdlpfGGakggvkidpkklseeeleritrrf 94 
                      p+r l v +pv++d+G+++ ++gyr+qh+  +gP kGG+R+hp+v+l+ev+aL+a+mt+K+a v++p+GGakgg+++dp +lse eler+trr+
       CTQ27836.1  42 PKRALIVDIPVQMDDGTIRHFEGYRVQHNLSRGPGKGGVRYHPDVDLNEVMALSAWMTIKCAAVNIPYGGAKGGIRVDPFSLSEGELERLTRRY 135
                      78999***************************************************************************************** PP

                      HHHHG.GG-BTTTEEEEBBTTB-HHHHHHHHHHHHH CS
  ELFV_dehydrog_N  95 vrelakkfiGpgiDvpApDvgtgaremawladeykk 130
                      ++e+   +iGp++D+pApDvgt+ + maw++d+y++
       CTQ27836.1 136 TSEIG-IIIGPQKDIPAPDVGTNGKVMAWMMDTYSM 170
                      *****.****************************97 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.4   6.6e-08   0.00015      27      70 ..     209     252 ..     193     273 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.6e-08
                   CCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  27 kallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskk 70 
                   ++  g e++g +v++ G+G++G+++a++++++g+++++++ +  
    CTQ27836.1 209 ARRAGIEIEGAKVALQGFGNVGSEAARLFAGVGARIVVIQDHTA 252
                   567899******************************99987744 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.4   1.1e-05     0.025      16      50 ..     216     250 ..     198     253 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
                 HHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  16 LrdskvllvGaGglGsellknLalsGvgkltlvDn 50 
                 ++ +kv+l G G +Gse+++++a++G + + + D+
  CTQ27836.1 216 IEGAKVALQGFGNVGSEAARLFAGVGARIVVIQDH 250
                 7889************************9999997 PP

>> Ad_Cy_reg  Adenylate cyclase regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0014         3      55      83 ..     199     227 ..     167     267 .. 0.81
   2 ?    3.0   0.0     0.032        72      47      79 ..     330     362 ..     302     389 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0014
   Ad_Cy_reg  55 dgtyvsareisektGidlellqrlqrAvG 83 
                  g++v+ re++ ++Gi++e ++   +  G
  CTQ27836.1 199 RGVFVTGREVARRAGIEIEGAKVALQGFG 227
                 599****************8887777666 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.032
   Ad_Cy_reg  47 aaervlgddgtyvsareisektGidlellqrlq 79 
                 +a  vl++ g+ v ++ i+++ G+++  ++ +q
  CTQ27836.1 330 EADDVLAERGVIVVPDVICNAGGVTVSYFEWVQ 362
                 56789*********************9888776 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   8.3e-05      0.19      14      52 ..     209     247 ..     202     273 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.3e-05
                    HHHH-S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE CS
  AdoHcyase_NAD  14 kratdvllaGkvavvaGyGdvGkGcaaslkglGarvivt 52 
                     r + + + G ++ + G+G+vG  +a+ + g+Gar++v 
     CTQ27836.1 209 ARRAGIEIEGAKVALQGFGNVGSEAARLFAGVGARIVVI 247
                    677788899**************************9985 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   7.7e-05      0.17       4      46 ..     215     264 ..     213     409 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.7e-05
  NAD_binding_7   4 dlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeele.......e 46 
                    +++g kv + G G+v+ + +r ++  ga+++v+   ++   +        
     CTQ27836.1 215 EIEGAKVALQGFGNVGSEAARLFAGVGARIVVIQDHTATLYNeggidmaA 264
                    7899*****************************99863333244443432 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.5   0.00013      0.29      21      65 ..     212     255 ..     197     279 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
                  CEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHH CS
  AlaDh_PNT_C  21 GgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparle 65 
                  +g++ +e akv   G G +G +A++  +g+ga+++v+   +a+l 
   CTQ27836.1 212 AGIE-IEGAKVALQGFGNVGSEAARLFAGVGARIVVIQDHTATLY 255
                  5677.99**************************999987777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3288.73
//
Query:       CTQ27837.1  [L=401]
Description: Succinylornithine transaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.4e-121  404.4   0.0   5.4e-121  404.0   0.0    1.0  1  Aminotran_3      Aminotransferase class-III
  ------ inclusion threshold ------
      0.019   14.2   0.1      0.052   12.7   0.1    1.7  1  Aminotran_1_2    Aminotransferase class I and II
      0.023   13.7   0.0      0.043   12.8   0.0    1.4  1  Aminotran_5      Aminotransferase class-V
      0.058   12.7   0.0       0.11   11.8   0.0    1.4  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.0   0.0  1.2e-124  5.4e-121      10     405 ..      22     395 ..      18     396 .. 0.98

  Alignments for each domain:
  == domain 1  score: 404.0 bits;  conditional E-value: 1.2e-124
                  CEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHH CS
  Aminotran_3  10 llvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKla 107
                  +++  +a+G++++d++gk+y+D++++iav++lGhahP++++a+++q+akl+h+  + +tnep+l+la+ l++ +    dkvf++nsG+eA+e+AlKla
   CTQ27837.1  22 PFIPVRAAGSRVWDQQGKEYIDMAGGIAVNALGHAHPALAQALQDQLAKLWHIG-NGYTNEPVLQLAKTLVQSTFA--DKVFFCNSGAEANEAALKLA 116
                  467789************************************************.*********************..******************** PP

                  HHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETTT CS
  Aminotran_3 108 rkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqgeg 205
                  rkya+ k   ek++iiaf++afHGrtl+++sv+g+ +ky++++ p++ ++++l+y+d                 +ea+ ++++  ++AvivEpi geg
   CTQ27837.1 117 RKYAHDKFGGEKSEIIAFNHAFHGRTLFTVSVGGQ-PKYSSDYAPLPQGITHLPYND-----------------IEAVTAAISSRTCAVIVEPIIGEG 196
                  ***********************************.********************9.................99********************** PP

                  TSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHHHHHH CS
  Aminotran_3 206 GvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnplacavala 303
                  Gv++a+p+fl++lr+lc++h + li+DEvqtG+GrTG+l+A++h++v pD++t+aK+l+gG+p+ a+la+++ +q+++pg hg+TfgGnpla+ va+a
   CTQ27837.1 197 GVIPADPAFLQALRTLCDRHHATLIFDEVQTGAGRTGHLYAYQHYNVVPDILTSAKGLGGGFPIGAMLAKEAWAQVFQPGTHGTTFGGNPLAATVANA 294
                  ************************************************************************************************** PP

                  HHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---TT--HHHHHHHHHH CS
  Aminotran_3 304 vleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGdnvirllppliitdeeidellei 401
                  vl+ + ++ ll  + e  a +  +L++++++y+ ++ vRg Gl+i++el  + + k k++++ a e+G++ l aG++v+r++p+l i  ++i+e++ +
   CTQ27837.1 295 VLAHL-DAPLLAGVGERHALIVGQLNAISARYDAFSAVRGTGLLIGAELAGPLRGKAKTLTNLAAEEGLIALIAGPDVLRFAPALNIPLADIAEAFVR 391
                  **998.5789999*****************************************999*************************************9999 PP

                  HHHH CS
  Aminotran_3 402 lkka 405
                  l +a
   CTQ27837.1 392 LDRA 395
                  8877 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.2e-05     0.052     130     264 ..     171     295 ..      53     310 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
                    E-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B-.-HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS.HTHHHHGGSTTSTTEEEEEESSSTT CS
  Aminotran_1_2 130 ldlealeealkeapegnkktkvilvesphNPtGtva.tleeleklldlakkynlllfvDeaYagfvfgsl.davatranveeepnllivgslsKaf 223
                    +d+ea+ +a+++      +t+ ++ve +    G+++ +++ l++l +l++++++ l++De+  g   + +  a++ + nv +++      + +K +
     CTQ27837.1 171 NDIEAVTAAISS------RTCAVIVEPIIGEGGVIPaDPAFLQALRTLCDRHHATLIFDEVQTGAGRTGHlYAYQ-HYNVVPDIL-----TSAKGL 254
                    789999999999......9***********99999637889********************88888777644444.788777655.....667777 PP

                    SSGGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHHHHHHHH CS
  Aminotran_1_2 224 GlaGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaal 264
                    G  G+ +G+ l+++a+++  +    + ++  ++l+a va+a+
     CTQ27837.1 255 G-GGFPIGAMLAKEAWAQVFQPGTHGTTFgGNPLAATVANAV 295
                    7.4777777777777777777777777777555555555554 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.6e-06     0.043      52     179 ..      87     227 ..      78     244 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.6e-06
                  HHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC.....-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBE.....GGGHHHH--TT CS
  Aminotran_5  52 vaelinaeseeeiiftsGtteainlvalslars.....lkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeld.....ldelekllnek 139
                   ++l++ + ++++ f+ +++ea++++++ +++        ++ ei+  +   h+ ++  + +  + ++  +++pl  +g        +++++++++ +
   CTQ27837.1  87 AKTLVQSTFADKVFFCNSGAEANEAALKLARKYahdkfGGEKSEIIAFNHAFHGRTLFTVSVGGQPKYSSDYAPLP-QGITHlpyndIEAVTAAISSR 183
                  5788999999*************9986554333333777899*******************************994.4443334445999******** PP

                  EEEEEEESBETTTTEB....--HHHHHHHHHHTT-EEEEE-TTT CS
  Aminotran_5 140 tklvaithvsnvtGti....qpveeigklakkkgalvlvDaaqa 179
                  t++v++  +  + G+i      ++++ +l+ +++a ++ D +q+
   CTQ27837.1 184 TCAVIVEPIIGEGGVIpadpAFLQALRTLCDRHHATLIFDEVQT 227
                  ***************8443346899999999***********97 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.5e-05      0.11      15     145 ..      73     224 ..      59     234 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.5e-05
                      TSS-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHH.....TTTT....TT-EEEEESSS-THHHHHHHHTT-EEEEE.-B-TT... CS
  DegT_DnrJ_EryC1  15 ksgwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLra.....lgvg....pgdeVIvpsltFvatanavlelgakpvfv.Dvdpd... 95 
                      + g   +++ v +++k + + + ++ +  ++sG +A++ aL+         +    ++ e+I   + F +     + +g +p +  D  p    
       CTQ27837.1  73 HIGNGYTNEPVLQLAKTLVQSTFADKVFFCNSGAEANEAALKLarkyaH--DkfggEKSEIIAFNHAFHGRTLFTVSVGGQPKYSsDYAPLpqg 164
                      444444577788899999999999999999********99998665440..14456899*********99999999999888774365553111 PP

                      .TSSB..-GGGCGGG--TTEEEEEEB-GGGB.......---HHHHHHHHHHCT-EEEEE- CS
  DegT_DnrJ_EryC1  96 .tyni..dpaaieaaitertkaIlpVhlyGq.......vadmdalkaiaakhglkvieDa 145
                       t+ +  d +a+ aai +rt a+++  + G+       +a ++al+ ++++h   +i D 
       CTQ27837.1 165 iTHLPynDIEAVTAAISSRTCAVIVEPIIGEggvipadPAFLQALRTLCDRHHATLIFDE 224
                      1333244899**************999999644443336779***************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3145.25
//
Query:       CTQ27838.1  [L=340]
Description: arginine succinyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.2e-132  439.5   0.0   5.9e-132  439.3   0.0    1.0  1  AstA      Arginine N-succinyltransferase beta subunit


Domain annotation for each model (and alignments):
>> AstA  Arginine N-succinyltransferase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.3   0.0  3.3e-136  5.9e-132       2     336 ..       1     329 [.       1     330 [. 0.98

  Alignments for each domain:
  == domain 1  score: 439.3 bits;  conditional E-value: 3.3e-136
        AstA   2 lviRparesDldallelaeesgvgltsLpadeeaLekkiarsersfakeveepgeesYlfvledtetgevvGtsaieaavGleepfysyrvstlvhaSr 100
                 +++Rp+re+Dld++++la+++gvg+tsLp+d  +L+++i+rs ++fa+e   ++++++lfvledt+  +vvG+saie+avGl+epfy++r++++v+aS+
  CTQ27838.1   1 MLFRPVRENDLDDIVRLAARAGVGMTSLPHDVGRLAARIRRSIETFAGE-LPRSQQGFLFVLEDTALARVVGVSAIEVAVGLDEPFYNFRIQKTVRASK 98 
                 689*********************************************9.999********************************************** PP

        AstA 101 elgvknrievLtlsndltgaselctlfldpeyrkgglgrllsrsRflfiaehrerFaekviaelrGvldedGrspFWealgrhFfsmdFaeadrlsgig 199
                 +lgv++  e+L+ls+d+tg+selctlfldp+y+++++g lls++Rflfia++re+F+ +++aelrG++de+G+spFW+alg+hFf++ Fa+adrl+g+g
  CTQ27838.1  99 ALGVYKPQELLNLSYDHTGHSELCTLFLDPAYQRNRNGLLLSKARFLFIAAFREWFSPHLFAELRGCSDEQGQSPFWDALGHHFFDIPFADADRLTGTG 197
                 *************************************************************************************************** PP

        AstA 200 skefiaeLmPkypiyvslLseeAqaviGkvhektrpalklLekeGfryegyvDiFDaGPtleaeldeirsvresrrlkvkkeeeeeeegekllvantkl 298
                  k+fiaeLmP ypiy+slL+e+A+ viG+vh++t+pa+++LekeGf+++g vDiFDaGP+lea++d+ir+vr+s+rl+v+  +   +  ++ lvan+++
  CTQ27838.1 198 MKTFIAELMPAYPIYISLLPEAARGVIGQVHPNTAPARAILEKEGFSWRGSVDIFDAGPVLEADTDQIRAVRDSQRLPVR--QLMGDLPAPTLVANGQF 294
                 ********************************************************************************..8899999********** PP

        AstA 299 edFravlaeleleeeelvlsaeaaeaLevsegdkvrvv 336
                 ++Fra+l++    ee+++l+++a++aL+vse d+v +v
  CTQ27838.1 295 DNFRALLVAH---EEQVSLDSAALDALQVSETDRVFTV 329
                 ******9865...5669*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2910.60
//
Query:       CTQ27839.1  [L=488]
Description: succinylglutamic semialdehyde dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.8e-117  392.7   0.0   2.2e-117  392.4   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.4   0.0  1.2e-121  2.2e-117       1     452 [.      12     460 ..      12     467 .. 0.95

  Alignments for each domain:
  == domain 1  score: 392.4 bits;  conditional E-value: 1.2e-121
                 EET-SSSEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH CS
      Aldedh   1 wvesesetievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlry 99 
                 w ++++ t+ ++ P +++ + ++++a+a+dv+aa+aaA++af  w++ p++eR ++++++a+lle++ke la+l+++et kpl+e+r+ev+ +i  +  
  CTQ27839.1  12 WLPGSGATMSKLAPEDQSLLWQAASAGADDVQAACAAARAAFYPWSHRPLAERIDVVQRFAALLETHKEALATLISRETSKPLWETRTEVQAMIGKAAI 110
                 77777889******************************************************************************************* PP

                 HHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHH CS
      Aldedh 100 yaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevge 198
                  +e+ ++ +g + ++ ++ +al r++P Gv+++  P+NfP +l+ ++++pal+aGNt+v+KP+e tp++a + ++l+++ag+P+g++n+++g g+ +g+
  CTQ27839.1 111 SIEAYHQRTGFHESTLPDGKALLRHKPHGVMAVFGPYNFPGHLPNGHIIPALIAGNTIVFKPSELTPATAEMTVQLWQQAGIPDGAINLLQG-GKATGQ 208
                 *******99955444589**************************************************************************.****** PP

                 HHHH-TTESEEEEES-HHHHHHHHHH.HHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHH.HHHHHHHHHHHHHHT CS
      Aldedh 199 alvehpevdkvsftGstevgrkiaka.aaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqes.iydefveklveaakk 295
                 al+e++++d v ftGs + g + ++   ++  k ++lE+GG+n+liv + aD+d+a++ i+++af++aGQ+C++a+rl+v+++   d+++++lvea ++
  CTQ27839.1 209 ALLENRDIDGVLFTGSAAAGFHFHRYfGGQPEKMLALEMGGNNALIVADVADIDAALHVIIQSAFISAGQRCTCARRLIVPRGeQGDALLQRLVEASAQ 307
                 **************************555889*************************************************9856788*********** PP

                 --BS-T.TSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSS CS
      Aldedh 296 lkvgdp.ldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdt 393
                 ++ g+  ++++  +G +is ++++++ +  ++ +  g k+ll     ++ + +  +++P +++   +  ++  eE+FGP+l++i+++ + eai++aN+t
  CTQ27839.1 308 IRAGKWdDQPAPFMGGVISLDAAQNMLAAQQKLEGLGGKVLLRM---RQPDPRSTVLTPGIVDV--TGIEVPDEEYFGPLLTIIRYDGFPEAIRLANQT 401
                 *****63778********************************76...67788999********5..799****************************** PP

                 SEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHH CS
      Aldedh 394 eyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkeg 452
                 +yGLa g++++d ++  ++a++ +aG v++N++ tga + +pfgGv++Sg+ r +  ++
  CTQ27839.1 402 RYGLAVGLISSDAAQFDQLADEARAGIVNWNKPLTGASSKAPFGGVGASGNHRAAAWYA 460
                 ***************************************************99876444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3602.92
//
Query:       CTQ27840.1  [L=446]
Description: succinylarginine dihydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.2e-218  723.8   0.7     7e-218  723.7   0.7    1.0  1  AstB      Succinylarginine dihydrolase
  ------ inclusion threshold ------
       0.18   11.9   0.0       0.41   10.8   0.0    1.5  1  IFP_35_N  Interferon-induced 35 kDa protein (IFP 35) N-termin


Domain annotation for each model (and alignments):
>> AstB  Succinylarginine dihydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  723.7   0.7  7.8e-222    7e-218       3     443 .]       4     445 ..       2     445 .. 0.99

  Alignments for each domain:
  == domain 1  score: 723.7 bits;  conditional E-value: 7.8e-222
                 EEEEEEE---TT-------TT-HHHHHTTT--B-HHHHHHHHHHHHHHHHHTT--EEEE----SS-HHHHHHTT--SSHHHHHHHHHHH-CHHHHHTS- CS
        AstB   3 vevnfDGlvGptHnyaGlslGnvasasnakevsnPraaalqGlekmkaladlglkqgvlpPqeRPdlelLrklgfsgsdeevlekaakeapellaaass 101
                 +e+nfDGlvGptH+yaGls+Gn as++n++  snP++aalqGl kmkalad g++qg+lpPq RP+l+lLr++gf+gsde+v+++aa++ap+ll+a+ss
  CTQ27840.1   4 FEANFDGLVGPTHHYAGLSVGNEASQNNRDGLSNPKKAALQGLYKMKALADRGFVQGILPPQPRPNLRLLREVGFQGSDEQVIRQAAHAAPQLLSAFSS 102
                 8************************************************************************************************** PP

                 -GGG-GGGTEEEE-TTTBTTSSEEEEE---TTSHHHHTSHHHHHHHHHHHS--TTTEEEE----SSGGG---GGGGEEEESSSTTS--EEEEEESB-TT CS
        AstB 102 assmwtanaatvspsaDtadgrvHltpanlvtklHRsleaettkrllkaiFadeekFavHealPeeakfgDeGaanHtRlckeygekgvelfvyGrsal 200
                 assmwtanaatvspsaD+adg+vH+t+anl++klHR++ea+tt+++l a+Fad ++Fa+H+alP++ ++gDeGaanH+R+c+ey+++gv++fvyGr+a 
  CTQ27840.1 103 ASSMWTANAATVSPSADSADGKVHFTVANLNNKLHRMQEAPTTSAILGATFADPRYFAHHAALPQHGDLGDEGAANHNRFCREYDRQGVQFFVYGRRAS 201
                 *************************************************************************************************97 PP

                 ..---S-SSS--S-BHHHHHHHHHHTTB-GGGEEEEEB-HHHHTTT--SGGGTEEEETTEEEEETTSBTTHHHHHHHHHHHSTT....-EEEEE-TTTS CS
        AstB 201 eeskvapkkfpaRqtleaseavarlhglkeertvfaqqnpeaidaGvFHnDviavgneevlflHeqafldkeavlaelreklee..aelelievpeeev 297
                     +ap k+paRqtleaseavarlh+l+++ tvfaqq+p+aid+GvFHnDviav+n++vlf+H+qaf+d+++vla+lr+k ++   +++ +evp+e+v
  CTQ27840.1 202 G--GIAPVKYPARQTLEASEAVARLHQLDPRYTVFAQQAPQAIDRGVFHNDVIAVSNRHVLFHHQQAFVDQATVLATLRAKSDSldIPFTSVEVPDERV 298
                 6..889****************************************************************************9988899********** PP

                 -HHHHHHHTTTSSEEEE-TTS-EEEEEEHHHHSSHHHHHHHHHHH.HSSSSEEEEEEE--HHHHTTT--TTTTEEEEEEEHHHHHHS-GGGB-SHHHHH CS
        AstB 298 sledavksYlFnsqlltlpdgemllvvPeecreneavkayleelv.asngpikevevvdlrqsmrnGGGPaCLRlrvvlteaelaavnpkvlldealle 395
                 sl+dav+sYlFnsqll++pdg+ml+vvPeecr++e+v++yl++l+ +s +pi+ev v+dlr+smrnGGGPaCLRlrvvl+eae++ vn++ l+++++++
  CTQ27840.1 299 SLDDAVASYLFNSQLLSKPDGKMLIVVPEECRQRENVWRYLSDLAaDSASPIDEVAVFDLRESMRNGGGPACLRLRVVLNEAERQSVNAHSLMNDERYQ 397
                 ********************************************98899************************************************** PP

                 HHHHHHHHH--S-B-GGGGG-HHHHHHHHHHHHHHHHHTT--S-SGGG CS
        AstB 396 rleewvekhyrdrlaeedladpqlleesrtaldeLtqilklgsvydfq 443
                 +l++wvekhyrdrl+++dladpqll+e+++aldeLtqil+lg+vydfq
  CTQ27840.1 398 QLTAWVEKHYRDRLHARDLADPQLLREVYQALDELTQILRLGAVYDFQ 445
                 ***********************************************9 PP

>> IFP_35_N  Interferon-induced 35 kDa protein (IFP 35) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.5e-05      0.41      41      69 ..     286     314 ..     277     319 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.5e-05
    IFP_35_N  41 ikftsvEtPeddsqlsniskSlqvslkil 69 
                 i+ftsvE+P++   l ++  S+  +++ l
  CTQ27840.1 286 IPFTSVEVPDERVSLDDAVASYLFNSQLL 314
                 99***********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 3776.82
//
Query:       CTQ27841.1  [L=331]
Description: succinylglutamate desuccinylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-53  181.0   0.3    3.1e-53  180.7   0.3    1.1  1  AstE_AspA      Succinylglutamate desuccinylase / Aspartoacyla
  ------ inclusion threshold ------
       0.26   11.0   0.0       0.55   10.0   0.0    1.4  1  Peptidase_M14  Zinc carboxypeptidase


Domain annotation for each model (and alignments):
>> AstE_AspA  Succinylglutamate desuccinylase / Aspartoacylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.7   0.3   3.5e-57   3.1e-53       4     287 ..      43     320 ..      41     324 .. 0.92

  Alignments for each domain:
  == domain 1  score: 180.7 bits;  conditional E-value: 3.5e-57
                 EEEEEE-SSTT-HHHHHHHHHHHHHHHCCC.ESCCEEEEEESSHHHHHCTSSSSSTT-S-CTTTTTCCCCC.SSTCHHHHHHHHHHHHHHHCHCT..C. CS
   AstE_AspA   4 kvlisAGvHGnElaGvellrqllkqleead.ilgeitlvplaNppAiaagsRyipidredLNRaFpgrslg.rsldealrateaerladalfaaa..l. 97 
                  +++sAGvHGnE+a++ell ql ++l+++  +l + +l++++N+pAi+a++Ry++   +dLNR+F gr+l  ++ +e++ra ++e+ ++a+ +aa  + 
  CTQ27841.1  43 ATILSAGVHGNETAPIELLLQLTHDLSQGRqPLTQALLIVFGNLPAIRAARRYLH---NDLNRLFGGRHLAvTPGNESRRAFALEQAVQAFYRAAdaAg 138
                 579*************************999************************...*********************************98752246 PP

                 CCGCEEEEEEEESSTBCCSSEEEE---SSHHHH..HHHHHHTTTSEEEEEESS--SSHHHHHHHHCTSEEEEEEEES.TTTTCCHHCCHHHHHHHHHHH CS
   AstE_AspA  98 peadivlDLHtgtrglkhllfaeadiaeaqlqs..lallkalglpavllldekesagfletaaeelgalaftlElGgagrlgaedisrtakgvlnvlah 194
                 p  + +lD+Ht++rg+ + +fa+++  +  +     +ll+a+g++av+  + ++ ++f++++ e+++a++ tlElG++ ++ga+d+s +a++ ++++a 
  CTQ27841.1 139 PVNRGHLDMHTAIRGSLYRQFALLPAHAGDFSPdfYQLLQASGMDAVV-RHTEAGGTFTHFTCEKFAAQSATLELGKVMPFGANDLSLFAAADAAIRAW 236
                 899**************************996699*************.9999999******************************************* PP

                 HCTCHTT.-SCC.CEEEEEEEEEEGGSCCCSSCSEEECCCCSTTTTETCTEEEETTEEEEECTSTEEEEESSSSEEEESCCTSCCTTTTEEEEE CS
   AstE_AspA 195 igvvagq.eavepaklyrvlreldeprdiraeeaGlvefkvklgddveagellakalvldslggekvelrapqdgvivfineaalvekgaalvk 287
                 i     + +   p+  + v  ++ + +          ef ++l++dve++++l+ ++ ++++  ek+++++ +  +i+f+n+ ++ +++a+l++
  CTQ27841.1 237 IADAPLPpRDKAPVDYFLVEESIIKREG---------EFTLNLAADVENFTALPAGYEIARQ-AEKRWVVQARAPYILFPNAGVATGQRAGLLL 320
                 ****999554444555555555666666.........9************************.9999***********************9986 PP

>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   6.1e-05      0.55      46      86 ..      41      79 ..      28      82 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 6.1e-05
                   -CEEEEEE-SSTT-HHHHHHHHHHHHHHHHHTTTSHHHHHH CS
  Peptidase_M14 46 kpvvlidggiHarEwigsalllylleqLlsaYgedeeikel 86
                   +++ ++++g+H++E+   +lll+l + L +   +++ ++ l
     CTQ27841.1 41 RQATILSAGVHGNETAPIELLLQLTHDLSQG--RQPLTQAL 79
                   6777899*********************985..77776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2362.59
//
Query:       CTQ27842.1  [L=476]
Description: D-alanine/D-serine/glycine transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-92  308.4  46.3    9.2e-92  308.1  46.3    1.0  1  AA_permease     Amino acid permease
    4.3e-42  144.4  52.8    4.8e-42  144.3  52.8    1.0  1  AA_permease_2   Amino acid permease
     0.0096   14.7  35.4      0.018   13.7  35.4    1.5  1  Aa_trans        Transmembrane amino acid transporter protein
  ------ inclusion threshold ------
        3.2    7.7   8.5       0.26   11.1   2.3    2.6  2  CoatB           Bacteriophage coat protein B


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.1  46.3     2e-95   9.2e-92       1     466 [.      28     459 ..      28     468 .. 0.94

  Alignments for each domain:
  == domain 1  score: 308.1 bits;  conditional E-value: 2e-95
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ialgg+iGtglf+g g  ++ aG  ++l++y+l+g+++++vm+++ge+        +f+ ++ ++lgp+++f+ G+ y++sw+++ ++++++++
   CTQ27842.1  28 HIQMIALGGAIGTGLFMGAGRNIAVAGT-SILVIYVLVGFFTYMVMRAMGELLLTRHDYRSFADFVGEYLGPQASFYLGWTYWLSWVVTCIADVVVCG 124
                  9***************************.********************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga...gfrflgdngsifknnlppgfake 193
                  +++q+w  +++l+ aw+ ++ +l++l+++nl++vk++geaef++alik+i+iia+i  g +++a g ++++    ++++l+d+++    ++p+g    
   CTQ27842.1 125 SYMQYW--FPELS-AWMPALSMLAILFLLNLLSVKMFGEAEFWFALIKVITIIALIGTGGWMIATGWTSPDGvtaSLSHLTDPTA----FMPHG---- 211
                  ******..*****.*******************************************9977777777666655779999999999....9****.... PP

  AA_permease 194 eegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlapl 291
                      +++f+++f+i++f+ftGiel++++ +E++dP++ +Pkai+   +ri+ifY+ls+++i+++ +++  +  +      spfv+ + ++g++++a +
   CTQ27842.1 212 ----ITGFFAGFQIAIFSFTGIELLGTMTAETRDPQRILPKAINALPLRIIIFYLLSMVVIIAVASWPGVSAET------SPFVTLFAKAGLPAAAAV 299
                  ....*****************************************************************77777......9***************** PP

  AA_permease 292 inaviltaalssansslysasRvlyslakdglaPkvlkkvskr.gvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsyl 388
                  in+v lt+a+ssans+++s++R+ly l+ +++a + ++ +s++ + P+r++l+s+++ l++ ll  l +++ + f+++++++a++ ++ w++i+++yl
   CTQ27842.1 300 INFVALTSAMSSANSGVFSSTRMLYGLSVEKHAHWQFRILSRStRIPVRSLLFSCFCMLIGTLLLFLVPNVMTLFTIVSTLAAIMVVFSWGMILVAYL 397
                  *****************************************98356**************************************************** PP

  AA_permease 389 rfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgv 466
                  ++R++   +   ++ + fk++ ++ ++++ l+++ + + i+ + + +              +a+  + l+f++++  +
   CTQ27842.1 398 VYRRQ---RPDLHAGSIFKMPAGVVMSWVSLLFFAFAIFIMIFDPDTL-------------LALLASPLWFIALWGFW 459
                  ****9...888899999*****************99999999887766.............66666666666666555 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.3  52.8   1.1e-45   4.8e-42       8     409 ..      31     442 ..      24     459 .. 0.87

  Alignments for each domain:
  == domain 1  score: 144.3 bits;  conditional E-value: 1.1e-45
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaEl.ssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaa 100
                    ++++g +ig+g f+    ++a +g++++++++++ + + ++v+ ++ El  +   + +    ++ +  g+++ f  +w++w+++v+++ + ++v++
     CTQ27842.1  31 MIALGGAIGTGLFMGAgrNIAVAGTSILVIYVLVGFFT-YMVMRAMGELlLT-RHDYRSFADFVGEYLGPQASFYLGWTYWLSWVVTCIADVVVCG 124
                    7999**********99999999***9999999988887.99********644.6999999999999****************************** PP

  AA_permease_2 101 syllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl........stetdtffpngwp 188
                    sy+++ ++p+l  +       a   l++++l+n++++k  + + ++ +++k+ +++i li +g +++  g+ s           t+ + f+p+g +
     CTQ27842.1 125 SYMQY-WFPELSAWM-----PALSMLAILFLLNLLSVKMFGEAEFWFALIKV-ITIIALIGTGGWMIATGWTSPDgvtaslshLTDPTAFMPHGIT 213
                    *****.569997774.....444579999***********************.788888889999999998876679988875444446******* PP

  AA_permease_2 189 gvllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilial 282
                    g+++g+ i+++sf+G+e    ++ e  ++++ +pkai+   l ++++yll ++++++v ++ +++  +++  ++  +f+++g +++a+++++++  
     CTQ27842.1 214 GFFAGFQIAIFSFTGIELLGTMTAEtrDPQRILPKAINALPLRIIIFYLLSMVVIIAVASWPGVSA-ETS--PFVTLFAKAGLPAAAAVINFVALT 306
                    *************************7667789*****************************99976.443..35566666699************* PP

  AA_permease_2 283 sllgaintavigssrvlealardgvlPrffakvn.kfgspiraiiltaivslillllfllas..saaynfllsvsslgliisyllliigalilrkk 375
                    s++ ++n+ v++s+r+l+ l+ ++     f+  +  + +p+r++ +++ + li +ll+ l++   + ++++++++++++++s++++++++l++r++
     CTQ27842.1 307 SAMSSANSGVFSSTRMLYGLSVEKHAHWQFRILSrSTRIPVRSLLFSCFCMLIGTLLLFLVPnvMTLFTIVSTLAAIMVVFSWGMILVAYLVYRRQ 402
                    ***************************888888878999***********9999999999999999****************************** PP

  AA_permease_2 376 rphlkr......pgkilvaiigalfllfllvalffppkgp 409
                    rp+l        p+ ++++++++lf+ f++++++f p+++
     CTQ27842.1 403 RPDLHAgsifkmPAGVVMSWVSLLFFAFAIFIMIFDPDTL 442
                    **9966667555777999****************998855 PP

>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7  35.4   4.1e-06     0.018      35     408 ..      53     436 ..      24     437 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.1e-06
    Aa_trans  35 vGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvsyliligdllpaifesffdtlllsnvyfilisal 133
                 +G  +l+++ l+ ++t++++  + + l + +  +s++d++  +lGp++++  + +  ++ + ++++ ++++g+ +++ f+ ++       +  +l++ +
  CTQ27842.1  53 AGTSILVIYVLVGFFTYMVMRAMGELLLTRHDYRSFADFVGEYLGPQASFYLGWTYWLSWVVTCIADVVVCGSYMQYWFPELSA---WMPALSMLAILF 148
                 4555555555555555555555555444679*************************************************9533...233344444444 PP

    Aa_trans 134 iiipLslipnlskLs.ylSllalvsslyy......ivilvlvvaelvklelkgvseetvkkasklkglflaigiivFAftghavlleiqnelkdpskfk 225
                  + +Ls ++ + +   +++l+ ++ ++++      ++++   + ++v+ +l    + t+   + ++g+f  + i++F+ftg+ +l ++ +e +dp+   
  CTQ27842.1 149 LLNLLS-VKMFGEAEfWFALIKVITIIALigtggwMIATGWTSPDGVTASLSHLTDPTAFMPHGITGFFAGFQIAIFSFTGIELLGTMTAETRDPQRIL 246
                 444444.56666655145666666655558888865555555555555555555555555667777******************************987 PP

    Aa_trans 226 .kmtkvlllsiilatvlyi..lvGlvGYltFGnevkgnillnlpkss..ilivivnlllvlhlilsfplqlhplrqvvenllikkeav.agasekeapk 318
                  k+  +l l ii+ ++l +  +++++ +     e+   ++l  +     +  +++n++ ++ ++ s    ++   +++  l  +k+a+ ++    + + 
  CTQ27842.1 247 pKAINALPLRIIIFYLLSMvvIIAVASWPGVSAETSPFVTLFAK-AGlpAAAAVINFVALTSAMSSANSGVFSSTRMLYGLSVEKHAHwQFRILSRSTR 344
                 67788888888888876552268999999999999886655554.334779999999999999999999888888888888877744313445566667 PP

    Aa_trans 319 skllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalf....hlkliktekksleklvkkkildlicivlglllvfyglavli 408
                 + ++ l++ ++ ++i +l+ ++vp+ + ++ +v+ +++++ +f +  ++     ++  +++   +++++ k+ + +++  ++ll++++ + ++i
  CTQ27842.1 345 IPVRSLLFSCFCMLIGTLLLFLVPNVMTLFTIVSTLAAIMVVFSWGMILvaylVYRRQRPD-LHAGSIF-KMPAGVVMSWVSLLFFAFAIFIMI 436
                 77799**************************************776654110033333333.3555554.445668888888888888888777 PP

>> CoatB  Bacteriophage coat protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.3   5.9e-05      0.26      17      42 ..      45      70 ..      37      75 .. 0.87
   2 ?   -2.9   0.5       1.4   6.5e+03      31      39 ..     266     274 ..     263     274 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.9e-05
       CoatB 17 tAkadiaaiGaaVLvvlVgvavfkWv 42
                +A+  ia++G ++Lv+ V+v  f ++
  CTQ27842.1 45 GAGRNIAVAGTSILVIYVLVGFFTYM 70
                6999****************999997 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.4
       CoatB  31 vvlVgvavf 39 
                 vv+++va +
  CTQ27842.1 266 VVIIAVASW 274
                 677777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1062  (0.0592336); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.41
# Mc/sec: 3492.10
//
Query:       CTQ27843.1  [L=441]
Description: Shikimate and dehydroshikimate transport protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-29  100.5  25.8    9.2e-25   87.4   8.1    2.2  2  Sugar_tr  Sugar (and other) transporter
    5.4e-27   94.6  45.8    3.9e-16   58.9  17.5    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        0.2   11.7   0.1        0.2   11.7   0.1    3.8  3  PgpA      Phosphatidylglycerophosphatase A


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   8.1   1.5e-28   9.2e-25       2     213 ..      18     235 ..      17     248 .. 0.92
   2 !   19.9   9.2   4.7e-08   0.00028     278     395 ..     267     380 ..     233     429 .. 0.64

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 1.5e-28
                 HHHHHHHH.HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   2 alvaalgg.llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 +l+a+l+g  ++++d++++g++++l     +f +   +        ls l++s++++++ iG++++  +gdr+GRkk+l+ +  l+  ++v +++ + +
  CTQ27843.1  18 VLIASLTGsAIEWFDYFLYGTAAALVFNKIFFPMVDPVIGLI----LSWLSFSLTFFIRPIGGVIFAHIGDRIGRKKTLVLTLSLMGSATVAIGLLPTY 112
                 689999999**************9999888888888887665....799******************************99888888888877777767 PP

                 .....SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-....TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 100 .....nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn....adgwrillglqlvpallllilll 189
                      ++  +li+ R++ G+g+G++ + + +++ E+Ap+k  g+++s+ q ++t+G+l+a+++   +  +++    a+gwri++ l++v+  l l ++ 
  CTQ27843.1 113 emvglWAPALLIILRIIQGMGIGGEWGGALLLAYEYAPEKRKGFFGSIPQAGVTIGMLMATFIVSLMTLFDEaqflAWGWRIPFLLSSVLVFLGLWIRK 211
                 89999*************************************************************9999999************************** PP

                 GS---HHHHHHTT-HHHHHHHHHH CS
    Sugar_tr 190 flPESPrylvekgkeeeakevlak 213
                  ++E+P +   k+  + ak+ l++
  CTQ27843.1 212 DIDETPAFKQVKKSGQVAKAPLRD 235
                 ********9998888888776665 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 4.7e-08
                 TTHHHHSS-THH...HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHH CS
    Sugar_tr 278 ptifenlglsks...llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwv 373
                 ++ + +l ++ks     vt++  v ++++ +++ +l+d++GR +++ l+++   ++ v     +lll +++ +  +++++ i+ f +l a  ++ v+  
  CTQ27843.1 267 SYATTTLSYQKSqalESVTLGALVATVMIPLMG-LLSDKVGRQKMYTLSVVLLGLFIVPW---FLLLDTGT-G-WGIMLATIVAFGILWA-PVTAVLGT 358
                 344445566666521234444444444555555.9***********99987766655555...45555553.3.4455555666666666.45566668 PP

                 HHHHHSHTTTHHHHHHHHHHHH CS
    Sugar_tr 374 lvsElfpqsvRskalaiavavn 395
                 l+sE+f+ +vR++++++ +++ 
  CTQ27843.1 359 LCSEIFSANVRYTGITLGYQLG 380
                 9*************99988764 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9  17.5   6.6e-20   3.9e-16      34     238 ..      60     273 ..      23     281 .. 0.70
   2 !   43.0  23.5   4.6e-15   2.8e-11      11     172 ..     257     424 ..     249     440 .. 0.81

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 6.6e-20
       MFS_1  34 igl.lltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa....sslw.l..llvlrvlqGlgagalfpagaaliadwfpkeergrai 123
                 +++  ++l ++   ++ +++++++dr+Gr+++l+l+l l++++ ++++l++     +lw +  l++lr++qG+g g+ + +++ l+ +++p++++g+  
  CTQ27843.1  60 LSWlSFSLTFFIRPIGGVIFAHIGDRIGRKKTLVLTLSLMGSAtVAIGLLPtyemVGLWaPalLIILRIIQGMGIGGEWGGALLLAYEYAPEKRKGFFG 158
                 445345556666799999*************************55555552344444443355************************************ PP

       MFS_1 124 gllsagfslGailgpllgg.........llasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwill 213
                 ++ +ag+ +G++++  + +         +la  +gWr +f++  ++ +l+     l+++ +  e + +++++++ ++++apl++ +k+ ++   + + l
  CTQ27843.1 159 SIPQAGVTIGMLMATFIVSlmtlfdeaqFLA--WGWRIPFLLSSVLVFLG-----LWIRKDIDETPAFKQVKKSGQVAKAPLRDTLKHHWREVLIAAGL 250
                 ***********88877777355555543333..55***************.....66666666666666666655578888888666666666332122 PP

       MFS_1 214 ialllfffgfsglltllplylqevl 238
                  ++ ++   f++++t++ +y+ ++l
  CTQ27843.1 251 KVVETA--PFYIFSTFVVSYATTTL 273
                 222222..34444444444444433 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 4.6e-15
       MFS_1  11 arsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.....sslwlllvlrvlqGlgagalfp 104
                  ++i+++++ ++ +++l +++s++   +tl al+a v+++++G lsd++Gr +++ l+++l++l+ ++++f      +++ ++l+  v  G+  + +++
  CTQ27843.1 257 PFYIFSTFVVSYATTTLSYQKSQALESVTLGALVATVMIPLMGLLSDKVGRQKMYTLSVVLLGLF-IVPWFLlldtgTGWGIMLATIVAFGILWAPVTA 354
                 56677777777999999999**9999***************************************.888873346667766****************** PP

       MFS_1 105 agaaliadwfpkeergrai.gllsagfslGailgpllggllasslg..Wravfyilaivsllafvlfllll 172
                 + ++l +++f+ + r  +i   +++g++l+   +pl++  l++ +   Wr v + l+i  +++++ +++  
  CTQ27843.1 355 VLGTLCSEIFSANVRYTGItLGYQLGAALAGGTAPLIATGLLAKYDgdWRPVAIYLGITVAISLL-AIFCA 424
                 ************555555515577788888888888887777666689**************966.33444 PP

>> PgpA  Phosphatidylglycerophosphatase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.3e-05       0.2      10      61 ..     157     215 ..     153     230 .. 0.85
   2 ?    1.7   0.5      0.04   2.4e+02      14      55 ..     280     322 ..     267     336 .. 0.65
   3 ?   -0.7   1.3      0.22   1.3e+03       8      58 ..     377     426 ..     326     436 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.3e-05
                 TT......--HHHHHHHHHHHTT.HHHHH.HHH.......HHHHHHHHHHHHHHHHHHT CS
        PgpA  10 sGllpvaPgtvgslaalllalllllleslslll.......llilllflvGiwackktek 61 
                  G +p a +t+g l+a+ ++ l++l+ ++++l+       ll ++l+++G+w+ k + +
  CTQ27843.1 157 FGSIPQAGVTIGMLMATFIVSLMTLFDEAQFLAwgwripfLLSSVLVFLGLWIRKDIDE 215
                 5899****************9999888886666777788889999********988766 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.04
                 ....--HHHHHHHHHHHTT.HHHHH.HHH.HHHHHHHHHHHHH CS
        PgpA  14 pvaPgtvgslaalllalllllleslslll.llilllflvGiwa 55 
                    ++t+g l+a+++  l+ ll++      + +l ++l+G+++
  CTQ27843.1 280 ALESVTLGALVATVMIPLMGLLSDKVGRQkMYTLSVVLLGLFI 322
                 55689*********99999855554322233444444444443 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.22
                 HHTT......--HHHHHHHHHHHTT.HHHHH.HHHHHHHHHHHHHHHHHHH CS
        PgpA   8 fgsGllpvaPgtvgslaalllalllllleslslllllilllflvGiwackk 58 
                  ++G +  a gt+  +a+ lla +   ++ +  +l +++++ l++i+++++
  CTQ27843.1 377 YQLG-AALAGGTAPLIATGLLAKYDGDWRPVAIYLGITVAISLLAIFCASR 426
                 3333.3334444444444444433334444433334555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3361.06
//
Query:       CTQ27844.1  [L=266]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-14   53.9   0.0    2.5e-14   53.4   0.0    1.2  1  DUF218    DUF218 domain


Domain annotation for each model (and alignments):
>> DUF218  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   1.4e-18   2.5e-14       3     106 ..      39     171 ..      38     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 1.4e-18
      DUF218   3 ivVL.Gaal.pllaeRldeaaelyrag..kiivsGg....................gadedvseaeamaeylre.lgvpeeailledrsrnTeenarfs 76 
                 +vVL G+a+ p     +d+a++l+ a+  ++++sGg                     + ++++ea ++a+++ +   +p +++++ed+s+n  enarf+
  CTQ27844.1  39 VVVLaGNAViP----AIDAACRLAAAQavPLLISGGvghstgylyeavrqdpryrtLPVDGRPEAHVLADIAHDyWHIPHSRLVVEDQSTNCGENARFT 133
                 46665866667....9**********9878********************99987633389*************888**88****************** PP

      DUF218  77 kell.....kersillVTsafHmpRalllfrkag...a 106
                 +  l      +r+ +++ ++ + +R++++f+++    +
  CTQ27844.1 134 RTTLesrglAHRRGIVIQDPTMQRRTMATFARVWqgaT 171
                 ********96579*******************933342 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2274.19
//
Query:       CTQ27845.1  [L=479]
Description: aldehyde dehydrogenase A, NAD-linked [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-164  548.1   0.4   1.5e-164  548.0   0.4    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.075   12.5   0.1       0.16   11.4   0.1    1.4  1  DUF1487   Protein of unknown function (DUF1487)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  548.0   0.4  1.6e-168  1.5e-164       4     462 .]      18     475 ..      15     475 .. 0.98

  Alignments for each domain:
  == domain 1  score: 548.0 bits;  conditional E-value: 1.6e-168
                 -SSSE.EEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH CS
      Aldedh   4 seset.ievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryya 101
                 ++++  i+v+nPat+  + ++p++tae+++ a++aA++a+++w++lpa eRa  Lrk+a+ +++r++e+a l+++e Gk  + a+ ev+ ++d+l+y+a
  CTQ27845.1  18 GRGDGwIDVLNPATEALLSRIPDGTAEEARLAIDAAERAQPGWEALPAIERAGWLRKIAAGIRQRADEIAGLIVAEGGKIQQLAAVEVAFTADYLDYMA 116
                 5553349******************************************************************************************** PP

                 HHHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHH CS
      Aldedh 102 elaeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgea 199
                 e+a+++ege+++s ++g+++lv++++lGv++ I PWNfP++l+a+klapal++GNt+v+KP+e tp  a+++ae+++++glPkgv+n+v g+g++vg++
  CTQ27845.1 117 EWARRYEGEIVQSdRPGENILVFKRALGVTTGILPWNFPFFLIARKLAPALITGNTIVIKPSEFTPNNAIAFAEIVHQVGLPKGVFNLVLGRGETVGQE 215
                 *************77************************************************************************************ PP

                 HHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--B CS
      Aldedh 200 lvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkv 298
                 l+ +p+v++vs+tGs++ g+ki++aaakn+++v+lElGGk+p+iv++daDl+ av+a+v + ++n+GQvC +++r++vq++iyd+fv++l ea+k++++
  CTQ27845.1 216 LAGNPKVAMVSMTGSVAAGEKIMAAAAKNITKVCLELGGKAPAIVMDDADLELAVKAVVDSRVINTGQVCNCVERVYVQQGIYDRFVNRLGEAMKAVQF 314
                 *************************************************************************************************** PP

                 S-T.TSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEE CS
      Aldedh 299 gdp.ldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyG 396
                 gdp  ++d  +GPli++a++++v + v++a+++ga++ lGg   ++ + kgyf+ Pt+l +v+++m+i++eE+FGPVl+v+ f++++ea+++aNd++yG
  CTQ27845.1 315 GDPaTRDDIAMGPLINAAARDQVAGKVAKAVAQGARVALGG---QPLEGKGYFYPPTLLLDVRQEMDIIHEETFGPVLPVVAFSTLDEALAMANDSDYG 410
                 ***7777**********************************...8899*************************************************** PP

                 SEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 397 LaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 L+++++t+dl+ a+++++ l++G+ yiN+ +  a++   + G+++Sg+G   g++gl+ey+++++v
  CTQ27845.1 411 LTSSIYTRDLNVAMKAIKGLKFGETYINRENFEAMQG-FHAGWRKSGIGGADGRHGLNEYLQTQVV 475
                 ******************************9999999.9***********************9976 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   1.8e-05      0.16       9      60 ..     259     312 ..     256     315 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.8e-05
     DUF1487   9 vifedgDlnsalealves..lkePfaegavatvlveesirdefvervrsklkpl 60 
                 ++++d+Dl+ a++a+v+s  ++    ++ v  v v++ i d fv+r+ + +k +
  CTQ27845.1 259 IVMDDADLELAVKAVVDSrvINTGQVCNCVERVYVQQGIYDRFVNRLGEAMKAV 312
                 799*************875456677899*******************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3723.75
//
Query:       CTQ27846.1  [L=332]
Description: Glyceraldehyde-3-phosphate dehydrogenase C [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-58  197.3   0.1    1.6e-58  196.8   0.1    1.3  1  Gp_dh_C        Glyceraldehyde 3-phosphate dehydrogenase, C-te
    4.4e-35  120.1   0.0    1.1e-34  118.8   0.0    1.7  1  Gp_dh_N        Glyceraldehyde 3-phosphate dehydrogenase, NAD 
  ------ inclusion threshold ------
      0.021   14.2   0.0      0.049   13.0   0.0    1.6  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      0.021   15.4   0.6       0.11   13.2   0.0    2.4  3  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.8   0.1   3.6e-62   1.6e-58       1     158 []     155     313 ..     155     313 .. 0.98

  Alignments for each domain:
  == domain 1  score: 196.8 bits;  conditional E-value: 3.6e-62
                 HHHHHHHHHHHHEEEEEEEEEEEECTTTSBSSSS--.SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS-H CS
     Gp_dh_C   1 LaplakvlndkfgikkglmttvhaytndQkllDgpskkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekevtv 99 
                 Lap+akvl+d+fgi  g+mtt+hayt++Q+l+Dgp  kdlr +raaaen+ip++tgaaka+glV+p l+gkl+g+A+rVPt+++sv++lv  lek+vt+
  CTQ27846.1 155 LAPMAKVLQDAFGITVGTMTTIHAYTGTQSLVDGPRGKDLRASRAAAENVIPHTTGAAKAIGLVIPALSGKLKGHAQRVPTKTGSVTELVSVLEKKVTA 253
                 8************************************************************************************************** PP

                 HHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGCEEET...TTEEEEEEEE CS
     Gp_dh_C 100 eevnaalkeaaegalkgilsyteeelvssDlvgdphssifdaketivve...enlvkvvawy 158
                 +evn+a+++aae   ++ ++yteee+vssD++g++  si+da++   ve    +lvk+vawy
  CTQ27846.1 254 DEVNQAMRQAAE--GNESFGYTEEEIVSSDIIGSHFGSIYDATQLEIVEaggVQLVKTVAWY 313
                 ***********5..5679**************************9999988789*******9 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.8   0.0   2.5e-38   1.1e-34       2     100 ..       3     102 ..       2     103 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.8 bits;  conditional E-value: 2.5e-38
                 EEEEESTSHHHHHHHHHHHHHT.TCEEEEEE-TS-HHHHHHHHHEETTTEC-SS-EEEETTEEEETTEEEEEE--SSGGGS-CHHHTSSEEEE-SSS-- CS
     Gp_dh_N   2 kvainGfGRIGrlvlralleek.elevvaindltdletlayllkyDsvhgrfkgeveaeeealvvngkkikvlaekdpeelpwkelgvdlVvestGvft 99 
                 k++inGfGRIGrlvlr lle + +levvaindlt+++ layllk+Ds +g f+ +v ++e+al+vngk+i+v+aek+ +++pw+++g++++ve+tG++t
  CTQ27846.1   3 KLGINGFGRIGRLVLRRLLEVDsSLEVVAINDLTSPKVLAYLLKHDSNYGPFPWSVDFTEDALIVNGKTITVYAEKEAQHIPWQAAGAEVIVECTGFYT 101
                 79*****************7666**************************************************************************99 PP

                 S CS
     Gp_dh_N 100 d 100
                 +
  CTQ27846.1 102 S 102
                 7 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.1e-05     0.049      37      67 ..       2      34 ..       1      49 [. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
                  SEEEEES-SHHHHHHHHHHHHTT-..EEEEESS CS
  2-Hacid_dh_C 37 ktvGiiGlGrIGqavakrlkafgm..kviaydr 67
                  +++Gi G+GrIG+ v +rl +++   +v+a++ 
    CTQ27846.1  2 SKLGINGFGRIGRLVLRRLLEVDSslEVVAIND 34
                  589****************98876336666655 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.4e-05      0.11       1      91 [.       8     121 ..       8     129 .. 0.76
   2 ?   -3.0   0.0       2.4   1.1e+04      28     105 ..     247     262 ..     225     274 .. 0.58
   3 ?   -3.4   0.0       3.4   1.5e+04      63      74 ..     298     309 ..     289     311 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.4e-05
                    --SHHHHHHHHHHHH---SSEEEEEEEEESS.EEE-TT............................HHHHHT--CB---HHHHHHHHS-EEEEE-S CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqseielelvavadrd.sllskd............................rkallasealtldlddliahldpdvvVEca 67 
                    G+G iG+ vl++l++  s  +le+va+ d   +++ +                             +   +++ea++ ++++      + v+VEc+
     CTQ27846.1   8 GFGRIGRLVLRRLLEVDS--SLEVVAINDLTsPKVLAYllkhdsnygpfpwsvdftedalivngktITVYAEKEAQHIPWQAA----GAEVIVECT 97 
                    99***************9..7999999998855544447899999*****888888877666654333333334444333333....57******* PP

                    --HHHHTTHHHHHHTTEEEE-S-- CS
  NAD_binding_3  68 sseavaelvlkaLkagkdvvtank 91 
                    +    ae  ++ L+ag   v  + 
     CTQ27846.1  98 GFYTSAEKSQAHLQAGARKVLISA 121
                    **9999999999999987777665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.4
                    EESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGGG-HHHHHHHTS CS
  NAD_binding_3  28 adrdsllskdrkallasealtldlddliahldpdvvVEcasseavaelvlkaLkagkdvvtankgaladealyeeLre 105
                    ++                                                             k++ a ++ ++++r+
     CTQ27846.1 247 LE-------------------------------------------------------------KKVTA-DEVNQAMRQ 262
                    33.............................................................33333.222333334 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.4
                    EEE-S--HHHHT CS
  NAD_binding_3  63 vVEcasseavae 74 
                    +VE+++++ v+ 
     CTQ27846.1 298 IVEAGGVQLVKT 309
                    799999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2405.69
//
Query:       CTQ27847.1  [L=52]
Description: conserved hypothetical protein; putative membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-18   64.5   8.0    7.5e-18   64.5   8.0    1.0  1  Pmp3      Proteolipid membrane potential modulator
  ------ inclusion threshold ------
       0.02   14.9   9.6       0.13   12.3   1.5    2.1  2  DUF2273   Small integral membrane protein (DUF2273)


Domain annotation for each model (and alignments):
>> Pmp3  Proteolipid membrane potential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   8.0   8.4e-22   7.5e-18       2      47 ..       3      48 ..       2      50 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 8.4e-22
        Pmp3  2 illillaiilPPlaValksGcsadllinilLtllgylPgviHAfyi 47
                +++i+  iilPPl+V+l +G++ ++++ni+Ltllgy+Pg+iHAf++
  CTQ27847.1  3 FWRIVFTIILPPLGVLLGKGFGWAFILNIILTLLGYIPGLIHAFWV 48
                689******************************************8 PP

>> DUF2273  Small integral membrane protein (DUF2273)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.5   1.4e-05      0.13      26      45 ..       2      21 ..       1      24 [. 0.94
   2 ?    6.9   2.4   0.00071       6.4      28      45 ..      25      42 ..      22      44 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.4e-05
     DUF2273 26 GFwktLliillvliGyyiGk 45
                GFw+ ++ i+l  +G+++Gk
  CTQ27847.1  2 GFWRIVFTIILPPLGVLLGK 21
                *******************9 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00071
     DUF2273 28 wktLliillvliGyyiGk 45
                w  +l i+l+l+Gy+ G 
  CTQ27847.1 25 WAFILNIILTLLGYIPGL 42
                8899**********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 424.88
//
Query:       CTQ27848.1  [L=130]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-46  157.2   0.6    1.8e-46  157.0   0.6    1.0  1  DUF1398   Protein of unknown function (DUF1398)


Domain annotation for each model (and alignments):
>> DUF1398  Protein of unknown function (DUF1398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.0   0.6     1e-50   1.8e-46       2     118 ..       9     125 ..       8     126 .. 0.99

  Alignments for each domain:
  == domain 1  score: 157.0 bits;  conditional E-value: 1e-50
                 HHHHHHHHH---HHHHHHHHHH-SSEEEEETTTSEEEEE-SSS-EEEEE-STT-----S---HHHHHHHHHHHHHT---HHHHHHHHHHTT--EEEEET CS
     DUF1398   2 eafekvksdadfpafiqelkrlgvskYeyfvadgnvkyvgendevvevkakrellkvaekknaelikaalkkhqqgettfetfcedlAkaGvekWivdl 100
                 ++fe+++sdad+++f++el+r++vs+Y+yfv++gn+++v++ndevv+vk++r ll+v+++++++l++aa+ +h++++++fe++c+dlA+aGv+kWivdl
  CTQ27848.1   9 HFFEQARSDADYATFANELRRHQVSYYIYFVSTGNMNFVMANDEVVSVKSARGLLRVRAEASHCLTRAAVIRHFARAINFEQYCRDLASAGVFKWIVDL 107
                 79************************************************************************************************* PP

                 TTTEEEEE-TT--EEEEE CS
     DUF1398 101 eektrtYydkdnsllliE 118
                 ee+tr+Y++kdn+ll++E
  CTQ27848.1 108 EEETRHYWSKDNTLLYKE 125
                 *****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1011.78
//
Query:       CTQ27849.1  [L=77]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-19   68.7   0.0    3.2e-19   68.5   0.0    1.0  1  TusA      Sulfurtransferase TusA
  ------ inclusion threshold ------
      0.034   14.0   0.0      0.087   12.7   0.0    1.6  2  DUF2249   Uncharacterized conserved protein (DUF2249)


Domain annotation for each model (and alignments):
>> TusA  Sulfurtransferase TusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   3.6e-23   3.2e-19       2      70 .]       9      77 .]       8      77 .] 0.98

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 3.6e-23
                EEEBTT-STTCCHHHHHHHHCCCGCT-EEEEEESSCHHHHHHHHHHHHHTEEEEEEE-GCC-EEEEEEE CS
        TusA  2 elDlrGlvCPePllklkkalekleegevlevladdpaatediprfakklghelveveeedgeyrivirk 70
                +lD+ G++CP+P + +++a+ +l+ ge+lev++d+p+++++ip  a+++g++++++++++ ++r++i+k
  CTQ27849.1  9 RLDMVGEPCPYPAVATLEAMPSLQKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK 77
                79******************************************************99*********98 PP

>> DUF2249  Uncharacterized conserved protein (DUF2249)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.7e-06     0.087       2      34 ..      10      42 ..       9      44 .. 0.91
   2 ?   -1.2   0.0      0.21   1.9e+03      46      61 ..      54      69 ..      51      77 .] 0.46

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.7e-06
     DUF2249  2 lDvRelppperhaaIfeafeaLapGetlelvnd 34
                lD  + p p +  a++ea  +L+ Ge le+v+d
  CTQ27849.1 10 LDMVGEPCPYPAVATLEAMPSLQKGEILEVVSD 42
                7777889999*********************98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.21
     DUF2249 46 arrpgffsweylergp 61
                ar  g+   + +++gp
  CTQ27849.1 54 ARNHGYTVLDIQQDGP 69
                4544443344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.27s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 587.86
//
Query:       CTQ27850.1  [L=402]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-47  162.9  36.2    3.8e-25   89.1  16.4    2.3  2  Sulf_transp  Sulphur transport
  ------ inclusion threshold ------
      0.058   13.0   0.4      0.091   12.4   0.4    1.2  1  DUF4073      Domain of unknown function (DUF4073)


Domain annotation for each model (and alignments):
>> Sulf_transp  Sulphur transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1  16.4   4.3e-29   3.8e-25     165     309 ..       3     160 ..       1     161 [. 0.84
   2 !   79.6  11.8   3.3e-26   2.9e-22       1     154 [.     237     386 ..     237     401 .. 0.75

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 4.3e-29
  Sulf_transp 165 ktslakklfrkpwslvlgavllgllavlawllsaktgrsfglgftvpgakilqylvlgtskflnw.............gvvlvlGiilGaflaallsg 249
                  ++s++++++ + ws+v + +++g+l++  + ++++++  +g  ft +g+++lq+l + ++++                   +++G + G ++aal+++
   CTQ27850.1   3 WQSFKQAWLIRFWSPVPAVIAAGILSTYYFGITGTFWAVTG-EFTRWGGQLLQLLGVHSEQWGYYqlihlegspltriDGRMIIGMFGGCLAAALWAN 99 
                  57899***************************866655444.59*********9977665542221122222222222577***************** PP

  Sulf_transp 250 efkleapk.arellaallGGllMGfGarlAgGCniGaglsgiaslslsgwlalvflllGav 309
                  + kl++p+ + ++++a++GG++ GfGarlA+GCn  a+++gi+++sl++wl++++  +G++
   CTQ27850.1 100 NVKLRLPRsRIRIAQAVAGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWLFAIATAIGSW 160
                  *******8688************************************************99 PP

  == domain 2  score: 79.6 bits;  conditional E-value: 3.3e-26
  Sulf_transp   1 rsrfcfagairdivvekdgrllralllaiavaavgfqllaaaglidlpksafpvvglivGGllFGvGMalaGgCasgtlyrvGeGslralitllffil 98 
                  r+++cf++a+rd+++++++ + +a+++ +a++a+g++   ++g+++      +   +++GGllFG+G++laGgC +g +yr++eG+++ +++ l+ ++
   CTQ27850.1 237 RAQICFTSAFRDMWITGRTVMAKAIIFGMAASAIGIFSYVQLGMAPKIMW--AGPNAAIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVI 332
                  789**********************************9999998864332..33478***************************************** PP

  Sulf_transp  99 gavalltgilsswleqllestvskeslyetlg.lsplllialllliallllvkelrk 154
                  g+++l  ++  + + ++l    +k++l +++g ++ ll++ llllialll+++ +++
   CTQ27850.1 333 GSTLL--AWCWEDIAAPLATHWQKVNLLNAFGpFGGLLATYLLLLIALLLVIA-WER 386
                  *9974..3444444444444456677777777445555555566665555553.322 PP

>> DUF4073  Domain of unknown function (DUF4073)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4     1e-05     0.091       6      39 ..     286     319 ..     282     325 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1e-05
     DUF4073   6 wagkkkvkggdkkgftvvntagietgwmsagpdg 39 
                 wag +   gg   gf +v ++g etgwm    +g
  CTQ27850.1 286 WAGPNAAIGGLLFGFGIVLAGGCETGWMYRAVEG 319
                 9***************************877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2822.74
//
Query:       CTQ27851.1  [L=117]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-41  140.5  10.2    2.1e-41  140.3  10.2    1.0  1  DUF1304        Protein of unknown function (DUF1304)
  ------ inclusion threshold ------
        3.3    7.5   9.4        4.7    7.0   9.4    1.4  1  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> DUF1304  Protein of unknown function (DUF1304)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.3  10.2   2.3e-45   2.1e-41       1     110 []       8     114 ..       8     114 .. 0.98

  Alignments for each domain:
  == domain 1  score: 140.3 bits;  conditional E-value: 2.3e-45
     DUF1304   1 llvallhlyilvlEmflwtsprarkvfgltkeeaakttkvlaanqGlYNgfLAagliwglllgseavglalvlfflgcvvvaglygaltaskkillvQg 99 
                 +lva++hl ilvlEmflw+ +++r++f+l+ ++a++t +vlaanqGlYNgfLAagl+wgl+lg++  g+++v+ffl+cv++ag++galtas+kil++Q+
  CTQ27851.1   8 ALVAIIHLAILVLEMFLWEGSAGRRAFNLSADFARQT-RVLAANQGLYNGFLAAGLAWGLWLGAP--GVQVVIFFLACVLAAGIFGALTASRKILYIQA 103
                 59*******************************9999.************************999..******************************** PP

     DUF1304 100 lpallAlvlll 110
                 lpallAlv++l
  CTQ27851.1 104 LPALLALVAVL 114
                 ********985 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   9.4   0.00052       4.7     110     177 ..      25      91 ..       2     112 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00052
  FA_desaturase 110 lalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglall.lwlvplllllflla 177
                    ++  +   +r++    +++++ r  +   +++  +la+ ++w+++l+++g++++ ++l+++l+++++ a
     CTQ27851.1  25 WEGSA--GRRAFNLSADFARQTRVLAANQGLYNGFLAAGLAWGLWLGAPGVQVViFFLACVLAAGIFGA 91 
                    33332..344444455555555555777788888888899***********999999998888887755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 936.82
//
Query:       CTQ27852.1  [L=159]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.066   13.4   0.1      0.098   12.9   0.1    1.3  1  DUF4451   Domain of unknown function (DUF4451)


Domain annotation for each model (and alignments):
>> DUF4451  Domain of unknown function (DUF4451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   5.5e-06     0.098      35      62 ..      10      37 ..       3      70 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.5e-06
     DUF4451 35 kkekflklknssyekhlsfeHGvlsngs 62
                ++  ++ ++++sy +h++ +HG +++ +
  CTQ27852.1 10 GELSLYSMNTGSYVYHMTGNHGQYNEHF 37
                5677899***************994433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1347.98
//
Query:       CTQ27853.1  [L=67]
Description: putative selenium carrying protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-36  122.9   0.1    5.8e-36  122.7   0.1    1.0  1  YdfZ      YdfZ protein


Domain annotation for each model (and alignments):
>> YdfZ  YdfZ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.7   0.1   3.2e-40   5.8e-36       1      64 []       2      65 ..       2      65 .. 0.99

  Alignments for each domain:
  == domain 1  score: 122.7 bits;  conditional E-value: 3.2e-40
        YdfZ  1 kiYDRnrNaittGsrVMiagtgevgvikaihtdgltaeqvrrekcVelegveerfaPleLirLG 64
                k+YDRnrNai+tGs+VMiag+g++gvikaih++g+taeq+rr++cVe++g+e+rf+Pl+LirLG
  CTQ27853.1  2 KTYDRNRNAIATGSMVMIAGNGTTGVIKAIHGEGKTAEQLRRADCVEIDGCEGRFCPLDLIRLG 65
                79*************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 601.33
//
Query:       CTQ27854.1  [L=75]
Description: hypothetical protein CH1034_190337 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.21s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 681.72
//
Query:       CTQ27855.1  [L=342]
Description: putative Mg2+ and Co2+ transporters [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-48  163.1   2.3      1e-47  162.8   2.3    1.0  1  CorA      CorA-like Mg2+ transporter protein
     0.0082   15.0   1.6      0.046   12.6   0.1    2.2  2  MscS_TM   Mechanosensitive ion channel inner membrane domain 


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.8   2.3   1.2e-51     1e-47       2     289 ..      52     334 ..      51     338 .. 0.96

  Alignments for each domain:
  == domain 1  score: 162.8 bits;  conditional E-value: 1.2e-51
        CorA   2 agfvWldlsspteeeleeLaeelgldelaledlldseerprvedyddylllvlpsveldkseeeeeevplsillgdnflitvrreplealdevikrlkd 100
                 + f+Wl+l+  ++ + ++L  ++ + +  +e++ ++++ +r+e  +++l+ vl++v  + ++   e  +l+++ ++++++t r +pl++++    rl+ 
  CTQ27855.1  52 KAFIWLHLNLNHATAEKWLTSHFPVADFFFEEIRSGSHTTRIERQGENLFAVLNDVLFRPQDTSAETATLWLYCSPRLVVTARFKPLRFIEWMLPRLQ- 149
                 689***********************999*********************************************************************. PP

        CorA 101 eggkpkspgellyrlldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkeylrdlld 199
                    ++++++ell+ ll+e  + l++++++ ++++d +e++l ++  +  + +la+lrr l +++r lap  +++ rll+ +   ++d++  + +r+  +
  CTQ27855.1 150 -TLRVNTSTELLAFLLEEQEEVLEQVVRQASRHVDLIEERLLSNHVQRNRADLARLRRMLLRFQRLLAPEPAAMFRLLN-RPPAWMDRAVVQAFRQFTE 246
                 .59*******************************************************************999989999.9****************** PP

        CorA 200 elerllemlealrerleslqdtyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallailllfw 289
                 e++ +l++l+ l er++ lq+++ +++ e+ Nr++++LTv+t++ lP  +++G++GmN++g+P + +++  +f+ll++++a+++++  ++
  CTQ27855.1 247 EFSVVLNDLSGLIERISLLQEEIGARQLEQSNRTLYTLTVITVLALPINIVAGFFGMNVGGIPLASNHH--GFILLVVIVAVFTLGAGYL 334
                 ***************************************************************999999..8888888888888877654 PP

>> MscS_TM  Mechanosensitive ion channel inner membrane domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.015   1.4e+02     104     135 ..     186     217 ..     177     226 .. 0.87
   2 !   12.6   0.1   5.2e-06     0.046      21      95 ..     258     329 ..     249     339 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.015
     MscS_TM 104 pdGlaerHFgwpkesvrrlrralkrlilvllp 135
                 ++ l+ +H + +++ ++rlrr+l r+  +l+p
  CTQ27855.1 186 EERLLSNHVQRNRADLARLRRMLLRFQRLLAP 217
                 5668999****************999777665 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.2e-06
     MscS_TM  21 lkrrleklaervgkvkqDsflhTlrallltlllalPlplllaaiglllqeaaqaepfaaalgaallaaalvllvf 95 
                 l +r++ l+e++g ++  +   Tl++l +  +lalP+ ++  ++g+ +   + a+  +++ g +ll + ++++++
  CTQ27855.1 258 LIERISLLQEEIGARQLEQSNRTLYTLTVITVLALPINIVAGFFGMNVGGIPLAS--NHH-GFILLVVIVAVFTL 329
                 6688999******************************************998888..444.55555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2484.66
//
Query:       CTQ27856.1  [L=390]
Description: bifunctional beta-cystathionase, PLP-dependent and regulator of maltose regulon [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-54  185.2   0.0    2.2e-54  185.0   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    0.00033   20.1   0.0    0.00052   19.4   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
     0.0044   16.0   0.0      0.011   14.7   0.0    1.5  2  Aminotran_5      Aminotransferase class-V
     0.0093   14.5   0.0      0.013   14.0   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.0   0.0     5e-58   2.2e-54       3     362 ..      30     381 ..      28     382 .. 0.95

  Alignments for each domain:
  == domain 1  score: 185.0 bits;  conditional E-value: 5e-58
                    EEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEE CS
  Aminotran_1_2   3 vinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilv 98 
                    ++ +++ +++++    t p+++ a  +     +++  y+ ++   ++  a+a+++ ++ + +++++ +vv+g+    + +  i+ +    gd i+v
     CTQ27856.1  30 LLPFTISDMDFA----TAPCILDAVSQ--RLAHGVFGYSRWR-NEAFLGAIAHWYASRFNSDIDPQ-SVVYGPSVIYMVAETIRQW-SKEGDGIVV 116
                    667889999999....99999999998..99999********.*************999*******.*******************.7******** PP

                    EESS-THHHHHHHHTTSEEEEEEBEET.TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTC CS
  Aminotran_1_2  99 pdptyasyknilrlsggevvryplyse.edfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagf 193
                    ++p y+ + n + +++  + ++pl  + + +++d+e le+al+e      k+ ++l++sphNPtG+v+ +eele++++l++k+++++++De++ ++
     CTQ27856.1 117 HTPAYDAFYNTITANRRRIAPVPLILKdNRWRCDMERLEAALAEP-----KNTLLLLCSPHNPTGKVWRREELETMAALCQKHGVRVISDEIHMDM 207
                    ***********************8644499**************4.....777******************************************* PP

                    BSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH..HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 194 vfgsldavatranveeepnllivgslsKafGlaGeRvGyilgna..avvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrke 287
                     +g++++++ +++v+++p+ ++ +s sK+f+++ +  +y ++ +  +  s+l+ l+ +   ss+  +a++a++ +  + + +l++ r+ lq++ ++
     CTQ27856.1 208 TWGEHRHIP-WSEVAQGPW-ALFTSGSKSFNIPAFTGAYGFIPEenERDSYLQALKGRDGLSSPSVPALVAHIAAYRDGAPWLDALRDYLQANMRY 301
                    ***999888.*********.**********************776889999999999988999999999999999999999*************** PP

                    HHHHHHHS..TEEEECCSCSSEEEEEETHH..CHHHHHHHHHHTCTEEEEEGGGGTS..TTEEEEECTTS-HHHHHHHHHH CS
  Aminotran_1_2 288 lrdeLael..glkvlasqsgmflltdlsae..takelskkLleevgvyvtpgtsftv..pgrlRitvAglteeeleelvea 362
                    + d L+++   l + +++++++ + dl+++  ++ +l+++L+ e++v+++pg  ++    g+lR++v g+++e+le+ ve 
     CTQ27856.1 302 VADTLNNAfpALCWQPPEATYLAWIDLRPLnvDDRALQQALIAEQKVAIMPGYTYGPegNGFLRLNV-GCPREKLERGVEG 381
                    *********999999999*********************************9999999999******.*********9985 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-07   0.00052      70     167 ..     110     201 ..     101     203 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.2e-07
                      TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-.EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT- CS
  Beta_elim_lyase  70 rgeevivtepahihfdetgaiaelagvklrdlk.nkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygi 162
                       g++++v+ pa   f+ t  ++    + +++l  +++    d+e+leaa++e     +k  l++l   +n   G+v+  eel+ +aa+++k+g+
       CTQ27856.1 110 EGDGIVVHTPAYDAFYNTITANRRRIA-PVPLIlKDNRWRCDMERLEAALAE-----PKNTLLLLCSPHNP-TGKVWRREELETMAALCQKHGV 196
                      677888888888888887555444444.4444413334799***********.....77799999999995.9********************* PP

                      EEEEE CS
  Beta_elim_lyase 163 plhlD 167
                      +++ D
       CTQ27856.1 197 RVISD 201
                      **988 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.5e-06     0.011      74     175 ..      97     201 ..      93     208 .. 0.88
   2 ?   -2.4   0.0      0.39   1.7e+03     116     147 ..     275     306 ..     273     309 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.5e-06
                  HHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--.TTEEEEEEESBETTTTE...B--HHHHHHHHHH CS
  Aminotran_5  74 inlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldeleklln.ektklvaithvsnvtGt...iqpveeigklakk 167
                  i +va +++++ k+gd ivv +  + a  +++  +++r+ a v  i +d++++ d+++le++l+ +k  l+ ++   n tG     +++e +++l++k
   CTQ27856.1  97 IYMVAETIRQWSKEGDGIVVHTPAYDAFYNTIT-ANRRRIAPVPLILKDNRWRCDMERLEAALAePKNTLLLLCSPHNPTGKvwrREELETMAALCQK 193
                  56899999999***********99999996665.556889***********************779***************94334789999999*** PP

                  TT-EEEEE CS
  Aminotran_5 168 kgalvlvD 175
                  +g+ v+ D
   CTQ27856.1 194 HGVRVISD 201
                  **999988 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.39
                  EEEEEBETTSCBEGGGHHHH--TTEEEEEEES CS
  Aminotran_5 116 vkvipldeegeldldelekllnektklvaith 147
                  v +i + ++g   ld+l+++l+ ++++va t 
   CTQ27856.1 275 VAHIAAYRDGAPWLDALRDYLQANMRYVADTL 306
                  56777888999999*************99665 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     3e-06     0.013      81     175 ..     101     203 ..      89     208 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3e-06
                      HHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTT.CEEEEEST...TSHHHHHHHCCT.TEEEEEEESS-TTTT---...-HHHHHHHHHHT CS
  Cys_Met_Meta_PP  81 aaailallkaGdeivvsddlYggtqrllkkvlkklg.ievkfvdt...sdleelekaike.ntklvylEtptnpllkvv...Diekiaklakka 166
                      a +i++  k+Gd ivv++ +Y+  ++ ++   +++  +     d     d+e+le+a+ e +  l++l +p np+ kv     +e++a+l++k+
       CTQ27856.1 101 AETIRQWSKEGDGIVVHTPAYDAFYNTITANRRRIApVPLILKDNrwrCDMERLEAALAEpKNTLLLLCSPHNPTGKVWrreELETMAALCQKH 194
                      45899999********************99999954155555555455689999999977699999*********9996444899********* PP

                      T-EEEEEGT CS
  Cys_Met_Meta_PP 167 gvlvvvDnt 175
                      gv v+ D  
       CTQ27856.1 195 GVRVISDEI 203
                      ****99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2891.49
//
Query:       CTQ27857.1  [L=530]
Description: fused maltose and glucose-specific PTS enzymes: IIB and IIC components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-85  286.3  29.0    4.6e-85  285.5  29.0    1.4  1  PTS_EIIC  Phosphotransferase system, EIIC
      2e-16   59.1   0.2    5.4e-16   57.8   0.2    1.7  1  PTS_EIIB  phosphotransferase system, EIIB


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.5  29.0   5.1e-89   4.6e-85       1     324 []      19     361 ..      19     361 .. 0.94

  Alignments for each domain:
  == domain 1  score: 285.5 bits;  conditional E-value: 5.1e-89
    PTS_EIIC   1 sdgfmlpiplliagGillglgn.lpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisv 98 
                 +++fmlp++ll ++Gi+lg+g+ l+  + l++l ++   ++l+ ++ ++ ++g+++f++Lp++f+i+i+ gla+++kgva++ag++g++++nl  a+++
  CTQ27857.1  19 GKTFMLPVALLSFCGIMLGIGSsLSSHDVLTLL-PWLDMPLLQAIFIWMSKVGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGFVGYAVMNL--AVNF 114
                 689*******************64444455544.4566788899999**********************************************..**** PP

    PTS_EIIC  99 lllaagala.........sakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqggl 188
                 +l+a+g+l+         + + +i gi++ +tg++ga+i+g++++ l+ +f++   i+LP++l+ff g+rfvpi+tt+ vl +vgl++ l+wp++ +g+
  CTQ27857.1 115 WLTAKGILPttdaailkaNNIQNIIGIPSIDTGILGAVIAGIIVWLLHERFHN---IRLPDALAFFGGTRFVPIVTTV-VLGLVGLAIPLVWPVFAMGI 209
                 ******************99*********************************...**********************.99999*************** PP

    PTS_EIIC 189 nalglllggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlyg............agk......eaahiltgefvsvmfGgpgat 269
                 nalg ++ ++g  +g +ifg+ erll+pfGlHh+++a + ft agg+l +++ +++g                      + + ++g+++++  G+pga+
  CTQ27857.1 210 NALGKMINSAG-DFGPMIFGTGERLLLPFGLHHILVALIRFTEAGGTLDVCGHSVSGaltifqaqlscpT-ThgfaesATRFLSQGKMPAFLGGLPGAA 306
                 **998888888.99*******************************************9999976665551.05666669999***************** PP

    PTS_EIIC 270 lalyiaaflekkskqkkllgsaaltpflfGItepleFgfpfvlnlllfipallag 324
                 la+y++a +e+++k k+ll+s+ ++++++G tepleF f+fv+++l++i+all+g
  CTQ27857.1 307 LAMYHCARPENRHKIKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTG 361
                 *****************************************************98 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.2     6e-20   5.4e-16       3      34 .]     455     486 ..     454     486 .. 0.98

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 6e-20
                 HHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB   3 IldalGGkdNIesvthCaTRLRltlkDaskvd 34 
                 Il+alGG++NI+s+++C+TRLRl ++D+skvd
  CTQ27857.1 455 ILAALGGAENIVSLDNCITRLRLSVHDMSKVD 486
                 9******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4053.87
//
Query:       CTQ27858.1  [L=342]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-74  249.1   0.0    8.6e-74  248.4   0.0    1.3  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    7.8e-20   71.8   0.1    4.1e-19   69.5   0.1    2.2  2  Peripla_BP_3  Periplasmic binding protein-like domain
    1.4e-18   66.4   0.2    3.3e-18   65.2   0.2    1.6  1  LacI          Bacterial regulatory proteins, lacI family
    4.1e-17   62.6   0.0      6e-17   62.1   0.0    1.3  1  Peripla_BP_4  Periplasmic binding protein domain
      0.003   17.6   0.1      0.003   17.6   0.1    2.5  3  HTH_3         Helix-turn-helix
  ------ inclusion threshold ------
      0.037   14.1   0.5        1.3    9.2   0.1    2.5  2  HTH_7         Helix-turn-helix domain of resolvase


Domain annotation for each model (and alignments):
>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.4   0.0   2.9e-77   8.6e-74       2     276 ..      65     339 ..      64     342 .] 0.96

  Alignments for each domain:
  == domain 1  score: 248.4 bits;  conditional E-value: 2.9e-77
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSH.HHHHHHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTTS- CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaagee.edlakaidllkakgidgliiatsdtsfdditakaes.gipvialedaidapdgvP 96 
                    ++gl++ +l++Pf+++l++g+t a++++g +v+l ++g   e++a+++d l+a+g+dg+iia++ ++++++++ a++ g+p +++++a++ + +v+
    CTQ27858.1  65 GVIGLIVSDLSKPFYAELTAGLTDALERQGKMVFLTQGGRSgEKMAQRFDTLAAQGVDGVIIAGAIDRGSELRERAAEaGVPLVFASRASYLD-DVD 160
                   589**********************************986515666********************************9**************.*** PP

                   EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHH CS
  Peripla_BP_1  97 cvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaal 193
                   +++pd++qa++  t++Li++gh+r ia+l+g++ +lt++erv+G++a+l + Gl++++ +v+++ +++++aaea++ ll+++P+i a+ ++n+ +a 
    CTQ27858.1 161 LIRPDNMQAAQLVTEHLIRRGHQR-IAWLGGQSASLTRAERVGGYCATLLKYGLPFHSEWVLECESSQKQAAEAMTGLLRQNPTITAVLCYNNVVAT 256
                   ************************.************************************************************************ PP

                   HHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEEE--EEEEETTTH CS
  Peripla_BP_1 194 GavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkerehprvllipvkfl 276
                   Ga+++l+ +Gr++++++v+s++e+ v+++++ ++ +  l++ pl++  +p++++G++++d +l   ++++ ++r+ + p +++
    CTQ27858.1 257 GAWFGLLRAGRQSGEDGVESYFEQRVALAAFADVPEAALDDLPLTWVTTPAREMGKSLADSMLRRLEEGTGETRNQIMPPRLV 339
                   ******************************************************************99999999988886665 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.7   4.9e+03      24      46 ..      77      99 ..      66     145 .. 0.56
   2 !   69.5   0.1   1.4e-22   4.1e-19       1     163 [.     174     341 ..     174     342 .] 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.7
                  HHHHHHHHHHHHHHTTSSS-EEE CS
  Peripla_BP_3 24 sasderergfrqaleelglplne 46
                  +++ e+++g+ +ale++g  +  
    CTQ27858.1 77 PFYAELTAGLTDALERQGKMVFL 99
                  55556666666666555544333 PP

  == domain 2  score: 69.5 bits;  conditional E-value: 1.4e-22
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC-SE..EEEESSCCHHHHHHHHHC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalll.qalklaalPt..AviaasDelAlgvlqalr 94 
                   +ehL+++Gh+ria +g  g++ + +  er  g++ +l ++glp++  +v + +++ ++aa+a+  l ++     +Pt  Av++++ ++A g+   l 
    CTQ27858.1 174 TEHLIRRGHQRIAWLG--GQSASLTRAERVGGYCATLLKYGLPFHSEWVLECESSQKQAAEAMTGLlRQ-----NPTitAVLCYNNVVATGAWFGLL 263
                   69**************..888899999***********************************9943233.....56444***********9999999 PP

                   CTT--TTTT.........EEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE-- CS
  Peripla_BP_3  95 eaglrvPed.........lsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveR 163
                   +ag +  ed         +++ +f d ++aal + plT v +p++e+G+ +a+ +l++le+   +++++ +pp+lv+R
    CTQ27858.1 264 RAGRQSGEDgvesyfeqrVALAAFADVPEAALDDLPLTWVTTPAREMGKSLADSMLRRLEEGTGETRNQIMPPRLVTR 341
                   999987776666666666*****************************************99999999999*******9 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.2   1.1e-21   3.3e-18       1      46 []       8      53 ..       8      53 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 1.1e-21
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ti+DVA +AGVS++TVS vL++k+r+s +t erV++a+e+l+++ n
  CTQ27858.1  8 TINDVALAAGVSVSTVSLVLSGKGRISSATGERVNQAIEQLGFVRN 53
                8******************************************988 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0     2e-20     6e-17       1     210 [.      67     271 ..      67     327 .. 0.81

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 2e-20
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CE CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerl 97 
                   ig++v+d s pf  +++ gl +a++  g+ v+++  ++ + +++++ ++++ a+gvdg+i+a +  +  ++  ++a++aG+p v+  ++     +++
    CTQ27858.1  67 IGLIVSDLSKPFYAELTAGLTDALERQGKMVFLT-QGGRSGEKMAQRFDTLAAQGVDGVIIAGAI-DRGSELRERAAEAGVPLVFASRA--SYLDDV 159
                   899********9999*****************96.888888******************999877.5666799****************..777788 PP

                   EEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH.....-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEE CS
  Peripla_BP_4  98 ayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke.....ypgikivaevaganwdaekaqqalealltanp.ldgil 188
                     +  dn +a++l  e l +   ++   ++ l G+  +   +er+ g  ++l +     ++++ +     +++ ++ +a +a++ ll++np + ++l
    CTQ27858.1 160 DLIRPDNMQAAQLVTEHLIRRGHQR---IAWLGGQSASLTRAERVGGYCATLLKyglpfHSEWVL-----ECESSQKQAAEAMTGLLRQNPtITAVL 248
                   8*********************976...***********************99945443333333.....559*****************77***** PP

                   ESSCCHHHCHHHHHHHTTT.TST CS
  Peripla_BP_4 189 aandgmaegalealeaagl.agk 210
                   + n++ a ga+  l  ag+ +g+
    CTQ27858.1 249 CYNNVVATGAWFGLLRAGRqSGE 271
                   ********988888888774333 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1     1e-06     0.003       7      39 ..       4      36 ..       2      49 .. 0.88
   2 ?   -3.0   0.3       2.6   7.8e+03      11      18 ..     226     233 ..     224     234 .. 0.88
   3 ?   -1.0   0.0      0.63   1.9e+03      18      34 ..     309     327 ..     307     333 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1e-06
                HTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHH CS
       HTH_3  7 qlglsqeeLAeklGvsrstisriEnGernPsle 39
                ++++++ ++A ++Gvs+st+s   +G+ ++s  
  CTQ27858.1  4 AKKITINDVALAAGVSVSTVSLVLSGKGRISSA 36
                689***********************9888865 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.6
                 HHHHHHHH CS
       HTH_3  11 sqeeLAek 18 
                 sq+++Ae+
  CTQ27858.1 226 SQKQAAEA 233
                 8*****98 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.63
                 HHT..SSHHHHHHHHTTSS CS
       HTH_3  18 klG..vsrstisriEnGer 34 
                 ++G  +  s ++r+E G  
  CTQ27858.1 309 EMGksLADSMLRRLEEGTG 327
                 5555566788888888854 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00043       1.3      19      38 ..       4      23 ..       3      28 .. 0.92
   2 ?    2.2   0.0     0.065   1.9e+02      11      27 ..     315     333 ..     308     334 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00043
                TTT--STTTSSSS---SSSS CS
       HTH_7 19 eeGisiskIAkevnisRsTv 38
                +++i+i+++A + ++s+sTv
  CTQ27858.1  4 AKKITINDVALAAGVSVSTV 23
                5789***************9 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.065
                 HGGGGSSTTTT..--STTT CS
       HTH_7  11 inrvvkLleeG..isiskI 27 
                  ++++++leeG  +++++I
  CTQ27858.1 315 ADSMLRRLEEGtgETRNQI 333
                 5899******966777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2737.42
//
Query:       CTQ27859.1  [L=525]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-133  445.3  18.3   3.5e-133  445.1  18.3    1.0  1  DUF945    Bacterial protein of unknown function (DUF945)
  ------ inclusion threshold ------
      0.073   12.9   5.2       0.35   10.7   0.3    3.7  4  GspL_C    GspL periplasmic domain


Domain annotation for each model (and alignments):
>> DUF945  Bacterial protein of unknown function (DUF945)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  445.1  18.3  3.9e-137  3.5e-133       1     459 [.       1     479 [.       1     480 [. 0.99

  Alignments for each domain:
  == domain 1  score: 445.1 bits;  conditional E-value: 3.9e-137
      DUF945   1 MKKslvavgvvvalgaawtGaswytGkqaeerldeqvaqlnkqlglkvveed......syerGvFsStaklvlqdaagaendedgkpvelvldstiyHG 93 
                 MKKslva+gv+valg++wtG++w+tGkq+e r+ ++v+q+n+ql ++++e++      +y+rG+FsS+ +lv++  ag+ n + + ++++vld+ ++HG
  CTQ27859.1   1 MKKSLVAAGVIVALGVVWTGGAWFTGKQLEGRIADMVQQANAQLRSSAPESGlelsyqDYQRGLFSSHLQLVVKPIAGQANGWLAAGQSVVLDEVVDHG 99 
                 **************************************************************************7789999****************** PP

      DUF945  94 Plplsr..kfnlspalasvetelaldeatkklfdklkgksPltlttrvgysgstsseltlpafelkeeggklewsggkvkvdlskdlkklsgegnldgl 190
                 P+pl++   fnl pa+asv+t+l++++a ++lf+ +kg++P+t++tr++ysg+++s++ l+a++++++++k+++sgg++++d+++d k++s++g++ + 
  CTQ27859.1 100 PFPLASlkAFNLAPAMASVHTTLVKNDASQALFEIAKGDTPFTVDTRIAYSGDSQSAIVLNALDYAKGDEKVTFSGGQFQLDADRDGKNISLKGQAGSG 198
                 *************************************************************************************************** PP

      DUF945 191 kleadn....deslelkgltlssdlkrgkeglylGdsslkiasltvssedqegaelknlsld..sssteegdllnstlkyslkslklngkdlgslklel 283
                 +++a n    +++l + +lt ++ ++  +++  +G++++++++l++s+e++e a +++++ld  s+ t++g+ +ns+++y+++slkl+g+d+gs+kl+l
  CTQ27859.1 199 QIDALNeynqKVQLRFVNLTTDGATELASFNERIGQQKMTLDKLAISVEGKELALIDGMALDggSTLTQDGKGVNSQVNYTVNSLKLQGQDMGSGKLTL 297
                 ***9999*99***************************************************************************************** PP

      DUF945 284 slnnLdaealkklqeaynqlqakala.....kaeeqlqeqleeallealpkLlakgpeleiselslknpeGeltlnlsldl....apedsaksdsenll 373
                 +++n+d++a+++++++y+++++  la     +++e +q++l e l +alp Ll+++p+++is+ls++n++Ge+tlnls+ l    + ++++++ +  l+
  CTQ27859.1 298 KVDNVDGQAWHQFSQQYSAQSQALLAkpelaQNPELYQQALTETLFNALPILLKGNPSVTISPLSWRNAKGESTLNLSVLLkdpaQVTAPPQTLADSLD 396
                 *******************9999999********************************************************999888999******** PP

      DUF945 374 qllkkleldaklslpkalleellaqaaksqegadkeeaekqakqqveqllqmlvqqgllklegddlkselkyengqvtlNGkpipl 459
                 +++++  ld+k+ +p ++++e+++++ + +eg+++++a+k+a+qqv++l++m++++++++ e+++++s+l+y+ngqvtlNG+++pl
  CTQ27859.1 397 RVVQS--LDGKVVIPVDMATEFMTKI-AGLEGYQPADAAKLADQQVKGLAAMGQMFRITTMEDNAISSSLQYANGQVTLNGQKMPL 479
                 *****..******************9.999*******************************************************8 PP

>> GspL_C  GspL periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   3.9e-05      0.35       8      53 ..       5      50 ..       1      89 [. 0.93
   2 ?   -0.2   0.0      0.09   8.1e+02      86     113 ..     146     173 ..     115     211 .. 0.84
   3 ?    0.8   0.3     0.044     4e+02     107     133 ..     291     317 ..     272     337 .. 0.73
   4 ?    0.2   0.2     0.065   5.8e+02      64      64 ..     337     337 ..     297     384 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.9e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      GspL_C  8 rkvaillalallvvvaerllqlyqlerqaqalraqseeiyqqlfPe 53
                  +a +++++ +v++++ +++  qle   ++  +q+ +++++  Pe
  CTQ27859.1  5 LVAAGVIVALGVVWTGGAWFTGKQLEGRIADMVQQANAQLRSSAPE 50
                56788999999*********************************98 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.09
                 HHHHHHHTSTT-EEEEEEEETTTTCEEE CS
      GspL_C  86 alqtaleqvpelelqsldYdgkrgelrl 113
                 ++++ + + +++ l++ldY +++ ++++
  CTQ27859.1 146 RIAYSGDSQSAIVLNALDYAKGDEKVTF 173
                 5666777889999999999999999998 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.044
                 TTTCEEEEEEESSCHHHHHHHHHHHCT CS
      GspL_C 107 krgelrlqleakdfaafeqlrakaatk 133
                 + g+l+l++   d +a+ q+ ++ +++
  CTQ27859.1 291 GSGKLTLKVDNVDGQAWHQFSQQYSAQ 317
                 457788888888888888888776654 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.065
                 X CS
      GspL_C  64 m 64 
                 +
  CTQ27859.1 337 A 337
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3811.55
//
Query:       CTQ27860.1  [L=391]
Description: mannose-6-phosphate isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.6e-108  361.2   0.0   9.5e-108  360.7   0.0    1.2  1  PMI_typeI       Phosphomannose isomerase type I
    2.9e-05   23.7   0.0     0.0026   17.5   0.0    2.4  2  Cupin_2         Cupin domain
  ------ inclusion threshold ------
      0.033   13.9   0.1       0.41   10.4   0.0    2.3  2  Cupin_6         Cupin
      0.059   13.0   1.1      0.082   12.6   0.1    1.7  2  AraC_binding_2  AraC-binding-like domain


Domain annotation for each model (and alignments):
>> PMI_typeI  Phosphomannose isomerase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.7   0.0  2.1e-111  9.5e-108       1     372 [.       1     356 [.       1     357 [. 0.96

  Alignments for each domain:
  == domain 1  score: 360.7 bits;  conditional E-value: 2.1e-111
                 EEEEEEEEEE-TTBEECGGSHHHHHHHHH-TT..TTSCEEEEEEC--TTS-EECTTTC.....CCCHCHHHHHHHTGHHHCCHHTSS-SEEEEEEEESS CS
   PMI_typeI   1 lfkLqcgvqnyaWGkiGsesalakllaasdPsieedkpyaElWmgtHpkgpskvlnkk.....lkdvvlkellaelresvgkkfgeelpfLfKvLsvek 94 
                 ++kL ++vqnyaWG   s++al++l++  +P    + p+aElWmg+Hpk++s++l ++     l++v+ +++ a+l+++v+ +fge lpfLfKvL++++
  CTQ27860.1   1 MQKLINAVQNYAWG---SHTALTELYGIANPD---NLPMAELWMGAHPKSSSRILAADgqprsLREVIDADKAALLGDKVAARFGE-LPFLFKVLCAAQ 92 
                 789***********...9**************...9*****************776666699***********************9.************ PP

                 ---EEE---HHHHHH..........HHHH.TCCCHCCCTTTEEEEESS.EEEEEEE..HHHHHHHCCCEHCCHCCCECCHHCCHHHHHHCCHTTSHHHH CS
   PMI_typeI  95 vlSiqvHPdKklaei..........lhaadpknYpddNhkpElaiAltdFeglcgfrpleeiveflkkvselaeligeetaksleelvslieagdpeal 183
                 +lSiqvHP+K+ +e           +  a+++nY+d+NhkpEl++Alt+F ++++fr          + se+  l+++ ++++++   +l++   p+a+
  CTQ27860.1  93 PLSIQVHPNKRASEEgfarenaagiPLSAAERNYKDPNHKPELVFALTPFLAMNAFR----------EFSEIVTLLQPVASAHPAIGAFLQQ---PDAT 178
                 **************9**********999****************************8..........5699999******************...9999 PP

                 CCCCHHCCHCHCCCTTTHHCCCHCCCCCCCCCCC-HHHCCCC-HHHHCCHCHHHSTTTTCHCH.TTEEEEEE.TT.EECCHCCHHCECCEEEEEEEEES CS
   PMI_typeI 184 kkkkvlqklFssllnsekekikqklallveriqssdaevnktdlaelidrlneqyPddiGlfa.llLNlvkLnpGEAmflkandphaylsGdivecmaa 281
                 +    l++lF+slln++ e++ ++l+ l + + ++++e+++t     i+ + e+yPdd+Glf+ llLN+vkLnpGEAmfl+a++phayl+G+++e+ma+
  CTQ27860.1 179 H----LSQLFASLLNMQGEEKAKALQVLRDVLAREQGEPWQT-----IRLIAEFYPDDSGLFSpLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMAN 268
                 9....*************************************.....9*************************************************** PP

                 -EEEEECCCECCEEECHCCHCH.EEEEEECCCCEE--BSCEECEEEEEEE.CCCCECCEEECCCTTEEEEE-TTS-EEEEEEECEEEEEECC CS
   PMI_typeI 282 sdnvvRaGlTpKfidvkelvemltYkykpsdelklqqteslldasvlydp.pieefavektklkkgeatilplesasiliaveGtatiivsh 372
                 sdnv+RaGlTpK+id++elv+++++++kp++el++q++    ++++l++p p+e+fa++ ++l++    + ++ sa+i+++v+G+a + +++
  CTQ27860.1 269 SDNVLRAGLTPKYIDIPELVANVKFEAKPAGELLTQPQR---HGAELDFPiPVEDFAFSLHDLSAEASDLAQA-SAAIVFCVDGEAVLRKGD 356
                 **************************************9...999******************9877776666.9**********9998876 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.013        57      38      57 ..     238     257 ..     236     261 .. 0.92
   2 !   17.5   0.0   5.7e-07    0.0026      20      51 ..     340     371 ..     332     374 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.013
                 EEEEETTEEEEE-TT-EEEE CS
     Cupin_2  38 eveleaGdsvyfpagtpHrf 57 
                 +v+l++G++++  a tpH++
  CTQ27860.1 238 VVKLNPGEAMFLFAETPHAY 257
                 689***************97 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 5.7e-07
                 EEEEEEEESEEEEEECTEEEEEETTEEEEE-T CS
     Cupin_2  20 deffyVleGegeltvdgeeveleaGdsvyfpa 51 
                  +++++++Ge++l+ +++  +l++Gds+++ a
  CTQ27860.1 340 AAIVFCVDGEAVLRKGDQSLTLKPGDSAFVAA 371
                 4899************************9977 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.076   3.4e+02      55      78 ..     239     262 ..     232     309 .. 0.83
   2 ?   10.4   0.0     9e-05      0.41      31      76 ..     337     380 ..     319     389 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.076
     Cupin_6  55 vrLsagdvvllpggephvladspg 78 
                 v+L++g++++l  ++ph+  ++ +
  CTQ27860.1 239 VKLNPGEAMFLFAETPHAYLQGVA 262
                 89***************8755555 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 9e-05
     Cupin_6  31 paglalhvvlrGscwlidpasgepvrLsagdvvllpggephvlads 76 
                 +a++a+++ + G++ l++++  ++++L++gd +++   e+ v  ++
  CTQ27860.1 337 QASAAIVFCVDGEAVLRKGD--QSLTLKPGDSAFVAASESPVQVSG 380
                 34599************777..88**********987755444355 PP

>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.2   5.4e+03     159     171 ..     176     188 ..     155     189 .. 0.56
   2 ?   12.6   0.1   1.8e-05     0.082      53      93 ..     337     378 ..     315     387 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
  AraC_binding_2 159 laaqleeLlaslL 171
                      a +l +L aslL
      CTQ27860.1 176 DATHLSQLFASLL 188
                     3678888888887 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.8e-05
  AraC_binding_2  53 ddfylvqlplsGraeveqggrevvlgpgdavvldpgr.pyrl 93 
                     ++   + +++ G+a+++ g++ ++l pgd +++++++ p+++
      CTQ27860.1 337 QASAAIVFCVDGEAVLRKGDQSLTLKPGDSAFVAASEsPVQV 378
                     4567899**********************7777776647766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3080.58
//
Query:       CTQ27861.1  [L=548]
Description: fumarate hydratase (fumarase A), aerobic Class I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-88  295.6   0.0    2.2e-88  294.9   0.0    1.4  1  Fumerase_C   Fumarase C-terminus
    1.3e-85  287.1   0.0    1.7e-85  286.8   0.0    1.1  1  Fumerase     Fumarate hydratase (Fumerase)
  ------ inclusion threshold ------
       0.14   10.3   0.0        0.2    9.8   0.0    1.1  1  Myosin_head  Myosin head (motor domain)


Domain annotation for each model (and alignments):
>> Fumerase_C  Fumarase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.9   0.0   3.7e-92   2.2e-88       1     205 [.     332     537 ..     332     538 .. 0.99

  Alignments for each domain:
  == domain 1  score: 294.9 bits;  conditional E-value: 3.7e-92
  Fumerase_C   1 GvflekleeepakllpeveekekkeeavevdLnq..keteeelskykvgtrlllsGkllvaRDaaHkrlkerlekgeelpeyvklkdrviYyaGPvktp 97 
                 G+++ekle++p k++pe+ +++ + eav+v+Lnq  +e++++ls+y+v+trl+lsG+++vaRD+aH++lke +++ge lp+yvk  d++iYyaGP+ktp
  CTQ27861.1 332 GIWIEKLESNPGKYIPEHLRQAGEGEAVKVNLNQpmSEILAQLSQYPVSTRLSLSGTIIVARDIAHAKLKELIDNGEALPQYVK--DHPIYYAGPAKTP 428
                 89***************99999999*********999***********************************************..************* PP

  Fumerase_C  98 edeavgsaGPTTatRmdkyvekllkktgllimlaKgnrskkvleaikkhggvYLgaiGG.aAilakkaikkvevvefeelGmEAiyeievedfpafvvv 195
                 +++a+gs+GPTTa+Rmd+yv+ l++++++ imlaKgnrs++v++a++khgg+YLg+iGG aA+la+++ik+ e+v+++elGmEAi++ievedfpaf++v
  CTQ27861.1 429 DGYASGSLGPTTAGRMDSYVDLLQSHGASKIMLAKGNRSQQVTDACHKHGGFYLGSIGGpAAVLAQQSIKSLECVAYPELGMEAIWKIEVEDFPAFILV 527
                 *************************************************************************************************** PP

  Fumerase_C 196 ddkGndlfke 205
                 ddkGnd+f++
  CTQ27861.1 528 DDKGNDFFQQ 537
                 ********98 PP

>> Fumerase  Fumarate hydratase (Fumerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.8   0.0   2.8e-89   1.7e-85       4     269 ..      51     326 ..      48     327 .. 0.95

  Alignments for each domain:
  == domain 1  score: 286.8 bits;  conditional E-value: 2.8e-89
    Fumerase   4 veealkeastelpedvlealkkalek.EesenakevleqlleNaeiAaeeklplCqDTGiavvfvkigeevevetgdleeaineGvreaykegplRksv 101
                 +++a+++as+ l++ ++++++++l++ E+sen+k+v+ q+l+N++iAa++ lp CqDTG+a++++k+g++v+ ++g  e+a+++Gv+++y + +lR+s+
  CTQ27861.1  51 AQHAFHDASFMLRPAHQQQVADILNDpEASENDKYVALQFLRNSDIAAKGILPTCQDTGTAIIMGKKGQRVW-TGGGDEAALAQGVYNTYIQDNLRYSQ 148
                 6899*******************************************************************9.77788888****************** PP

    Fumerase 102 vadp.l.erkntgdnlPavihielvpgdeleitvlakGgGsenksklk.....mlnpsdglegvkkfvletvkeagtnaCpPlvlgvgiGgtseeaall 193
                  a+  + +++ntg+nlPa+i++++++gde++++++akGgGs+nk++l+     +++p    +++k++++e+++++gt+aCpP++++ +iGgts+ea+l+
  CTQ27861.1 149 NAPLdMyKEVNTGTNLPAQIDLYATDGDEYKFLCIAKGGGSANKTYLYqetkaLITP----AKLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAEATLK 243
                 *999*99*****************************************888877788....78************************************ PP

    Fumerase 194 akk.al...lrelgeenpdee.....laeleeellekinklgiGpqGlGGkttvldvkierlprhiAslpvavnvsCsadRrakv 269
                 ++k a+   ++ l++e+ +e+     + +le+ell ++++lg+G+q +GGk++++d++++rlprh+As+pv+++vsCsadR++k+
  CTQ27861.1 244 TVKlAStkyYDGLPTEG-NEHgqafrDVQLEQELLLEAQNLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKA 326
                 ***99988888888888.444467789*******************.***********************************997 PP

>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   3.3e-05       0.2     163     239 ..     200     275 ..     194     293 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 3.3e-05
                  TSSEEEEEEEEECE-GGGGT---TT--SBHHHHHHHHCSTHHHHHHTT--TCCGSTTTTTTSSSSBTTS-HHHHHHH CS
  Myosin_head 163 kgkiagakietYLLEksRvvkqakeERnyHiFYqllagaseeekkelkledvkdyaylsqsgeltvdgiddseefke 239
                  k+ i+ ak+++YL+Ek R +  a+    yHi + +   ++e + k++kl ++k+y  l ++g+ + ++  d++  +e
   CTQ27861.1 200 KALITPAKLKNYLVEKMRTLGTAA-CPPYHIAFVIGGTSAEATLKTVKLASTKYYDGLPTEGNEHGQAFRDVQLEQE 275
                  567889************998765.679********999****************9998888887777777765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 4055.86
//
Query:       CTQ27862.1  [L=167]
Description: molybdopterin-guanine dinucleotide biosynthesis protein B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-48  162.9   0.0      4e-48  162.7   0.0    1.0  1  MobB      Molybdopterin guanine dinucleotide synthesis protei
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.015   14.9   0.0    1.5  1  cobW      CobW/HypB/UreG, nucleotide-binding domain
      0.014   15.7   0.1       0.02   15.1   0.1    1.6  1  AAA_22    AAA domain
        0.1   12.3   0.0       0.14   11.9   0.0    1.2  1  PRK       Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.7   0.0   8.9e-52     4e-48       2     133 .]       5     139 ..       4     139 .. 0.96

  Alignments for each domain:
  == domain 1  score: 162.7 bits;  conditional E-value: 8.9e-52
        MobB   2 lgivgksgsGKTtLleklipelkarglrvgtiKhahhgfdvdkpgkDsyrhrkAGAkevlvaskerlalikel.eeaelsleellarlse..vDlvlvE 97 
                 l+i+++sg+GKTtLl++lipel+a glr g+iKh+hh++dvdkpgkDsy++rkAGA++++vas++r+al++e+ e++el+l  l++r+++  +DlvlvE
  CTQ27862.1   5 LAIAAWSGTGKTTLLKRLIPELCALGLRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVASEQRWALMTETpEKPELDLTWLVSRMDAskLDLVLVE 103
                 89***********************************************************************9999***********5556******* PP

        MobB  98 Gfkkealpkievlraelgkeelllledekliavvsd 133
                 Gfk+e++pki ++r++ g+    l  de+ iav+sd
  CTQ27862.1 104 GFKHEPVPKILLFRQNSGHRVEELVIDEHTIAVASD 139
                 ****************999888888899******97 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   3.4e-06     0.015       3      43 ..       5      47 ..       3     138 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.4e-06
                EEEEESTTCCHHHHHHHHH..CT--SS-EEEEESS-SSCHCCC CS
        cobW  3 tvltGflGsGKTtLlnhll..enraglklavivNefgevsiDa 43
                + ++   G+GKTtLl++l+   ++ gl+  +i     ++++D+
  CTQ27862.1  5 LAIAAWSGTGKTTLLKRLIpeLCALGLRPGLIKHTHHDMDVDK 47
                6788899************999999999999999888888886 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.1   4.6e-06      0.02       8      30 ..       5      27 ..       3     132 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.6e-06
      AAA_22  8 lvvtGesGtGKTtllrrlleqld 30
                l++ + sGtGKTtll+rl  +l+
  CTQ27862.1  5 LAIAAWSGTGKTTLLKRLIPELC 27
                78999*************98876 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.1e-05      0.14       2      55 ..       5      59 ..       4      76 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.1e-05
         PRK  2 IgvagsSGaGkttvarklekifgrekvkaaeiegd.sflrldraekdleleerkr 55
                +++a+ SG Gktt+ ++l   ++  ++++  i+++  ++ +d+  kd    ++++
  CTQ27862.1  5 LAIAAWSGTGKTTLLKRLIPELCALGLRPGLIKHThHDMDVDKPGKDSYELRKAG 59
                69*********************9*999999966515677777665544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1321.38
//
Query:       CTQ27863.1  [L=193]
Description: molybdopterin-guanine dinucleotide synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-36  124.8   0.2    5.1e-36  124.4   0.2    1.1  1  NTP_transf_3  MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.2   2.9e-40   5.1e-36       1     156 [.       8     159 ..       8     165 .. 0.92

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 2.9e-40
                   EEEEEESS-TTTTT.THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHCHHHHHHTTCTS-EEE-TTSS.-SHHHHHHHHHHHH.SSSCEEEEETT CS
  NTP_transf_3   1 aviLAGGrSsRmgg.dKallplggkpllervldalraagvdevvvvggdeevlaalarlgvrvvededpg.kgplaslaaalraaadadavlvlacD 95 
                   +v+LAGGr++Rmgg dK l  l+g+pl ++v++al+++ vde+v++++++   ++ + +g +v++d ++g +gpla+++a ++++  + ++++++cD
    CTQ27863.1   8 GVVLAGGRATRMGGiDKGLQALNGRPLWRHVAEALAPQ-VDELVISANRHL--EQWRASGFPVFRDIQEGyQGPLAGMLAVMQQV-ASPWFVFCPCD 100
                   79************************************.*********984..56899********99955*************9.8********** PP

                   -TT--HHHHHHHHHCHHHHTSSEEEEESSSEEEECC..EEEGGGHHHHHHHCTHTTHHHCHHH CS
  NTP_transf_3  96 mPlltpelverllaaaaasgadvvvptyegerghpl..lfrarllsalaallgdqgarrllrr 156
                   +P++++ lver++++    g++ vv++++ger hp+  l +++++++l+a+l+ +g+rr++  
    CTQ27863.1 101 TPFIPSFLVERFIQQR---GDAPVVWAHDGERDHPAvaLVHRQIIPELEAYLA-HGERRVMVF 159
                   **************85...67779999*********6556***********95.899999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1644.38
//
Query:       CTQ27864.1  [L=89]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-46  156.2   0.5    2.4e-46  156.0   0.5    1.0  1  DUF1040   Protein of unknown function (DUF1040)


Domain annotation for each model (and alignments):
>> DUF1040  Protein of unknown function (DUF1040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.0   0.5   1.3e-50   2.4e-46       1      86 []       1      86 [.       1      86 [. 1.00

  Alignments for each domain:
  == domain 1  score: 156.0 bits;  conditional E-value: 1.3e-50
     DUF1040  1 mkchrinellellqpeWkkekdlnllqllqklaeeagfegeleeltddvliyhlkmresdkeemiPGlkkdyeedfktallkarGi 86
                mkc+r+ne++ellqp+W+ke++lnl+q+lqkla+eag++gel++l+dd+liyhlkmr+s+k+++iPG++kdyeedfktall+arG+
  CTQ27864.1  1 MKCKRLNEVIELLQPAWQKEPELNLMQFLQKLAKEAGYDGELSDLSDDILIYHLKMRDSSKDAVIPGIQKDYEEDFKTALLRARGV 86
                9************************************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 776.96
//
Query:       CTQ27865.1  [L=328]
Description: putative kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-43  149.0   4.2    2.1e-43  149.0   4.2    1.7  2  APH       Phosphotransferase enzyme family
     0.0096   15.3   0.0      0.023   14.0   0.0    1.5  1  EcKinase  Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.0   4.2   2.3e-47   2.1e-43       3     231 ..      32     254 ..      30     271 .. 0.86
   2 ?   -1.9   0.0      0.29   2.6e+03     202     218 ..     275     291 ..     267     298 .. 0.78

  Alignments for each domain:
  == domain 1  score: 149.0 bits;  conditional E-value: 2.3e-47
                 EEE--.SSCEEEEEEETT-.-EEEEEE-TT.S-HHHHHHHHHHHHHHHHTT-B--B-CTTB..S-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHH CS
         APH   3 relsggasnrtylvttpag.ryvlrrnppa.raaeeirrevallrlLakagvpvPevlagd..tddeeigllfalieyvpgrsllrklsaaqlpellea 97 
                 ++l++ ++nr+y+++++++ ryv+++++p+ ++ae+i +e+++  +L + +vpv+++l +   t ++++g++fa++++++gr+++      +  ++ e+
  CTQ27865.1  32 TPLNS-YENRVYQFQDEERhRYVVKFYRPErWSAEQILEEHQFALQLVEDEVPVAAPLLFNdsTLHQHQGFYFAVFPSLGGRQFEA-----DNLDQMEW 124
                 67888.************55********************************88888854445***********************.....99****** PP

                 HHHHHCCHHCH.-STTTB-SHHCHTCCHH......HHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE CS
         APH  98 lgeflaalhqvdpaalpladflaqdlell......rqlesatarllaselldlleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGv 190
                 +g++l++lhq+    +++++ +++ + ++      rq+ ++ a l++s l+ + +++++ ++aa+ + ++g + t  lHgD+h gN+l++  dg++  +
  CTQ27865.1 125 VGRYLGRLHQT---GCKQRFTARPEIGVQeyllepRQVFEQ-ATLIPSGLKADFLKATDKLIAAVMEQWHGRGNTLRLHGDCHAGNILWR--DGPL--F 215
                 ***********...555555555444444111111444444.367888888888888888******************************..9***..* PP

                 ---TT-EEEECCHHHHCCHHHCSCHCCCHCHHHHHHHHCS- CS
         APH 191 iDfedaglgpplyDlavllrswtseldpeflaallrayeqe 231
                 +D++da++gp+++Dl++ll + + +++  +l+ +++aye e
  CTQ27865.1 216 VDLDDARTGPAIQDLWMLL-NGDKAEQRMQLETIVEAYE-E 254
                 *******************.98****************9.3 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.29
                 CHHHHCCHHHCSCHCCC CS
         APH 202 lyDlavllrswtseldp 218
                 +y la+llr+w+++++p
  CTQ27865.1 275 VYYLAWLLRRWDDPAFP 291
                 56689999889988876 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.5e-06     0.023     206     281 ..     185     252 ..     157     255 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.5e-06
    EcKinase 206 lveekeeefnvl.nHGDlwvnNimfkydeegepedvilvDFQlsrygSpalDLlyflytsteeelrkekfdellriY 281
                 ++e+  ++ n+l +HGD++  Ni+ +          ++vD+  +r g+ ++DL+++l+   +++ ++ ++++++++Y
  CTQ27865.1 185 VMEQWHGRGNTLrLHGDCHAGNILWRDG-------PLFVDLDDARTGPAIQDLWMLLNG--DKAEQRMQLETIVEAY 252
                 44455555566647***********886.......47*****************99975..4444556677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2459.72
//
Query:       CTQ27866.1  [L=207]
Description: periplasmic protein disulfide isomerase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-29  101.1   5.3    5.4e-28   98.1   5.3    1.9  1  DSBA           DSBA-like thioredoxin domain
    9.7e-10   38.9   0.0    1.4e-09   38.3   0.0    1.1  1  Thioredoxin_4  Thioredoxin
     0.0039   17.2   0.5       0.26   11.3   0.2    2.5  2  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.018   14.5   0.0    1.3  1  Lpp-LpqN       Probable lipoprotein LpqN
      0.018   14.8   0.0      0.097   12.5   0.0    2.1  3  DUF3088        Protein of unknown function (DUF3088)


Domain annotation for each model (and alignments):
>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   5.3   1.5e-31   5.4e-28       1     192 [.      40     196 ..      40     197 .. 0.93

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 1.5e-31
                 EEEEEEBTTBHHHHHHHHHHHHHHHHC....CTEEEEEEE-SSSCHHHHCT.S.GGGSHHHHHHHHHHHHHHHHHHT....GGSSHHH.HHHHHHHHHH CS
        DSBA   1 tvdeffDvlCPyCylgkerleklaars....pdvkvvlrpfelagakkasgnvgpselpeklkylledlkrlaeaegiplrfpkdklk.nstraarlll 94 
                 +v eff+++CP+Cy+++e+l+  ++ +    +++k++++++e+ g                                         l+ ++t+a+++++
  CTQ27866.1  40 QVLEFFSFYCPHCYQFEEVLHVSDNVRqklpEGTKMTKYHVEFLGP----------------------------------------LGkDLTQAWAVAI 98 
                 589*******************99999999666*************........................................777********** PP

                 HHHHHHGHHHHHHHHHHHHHTSSS-TSSHHHHHHHHHHTTS.HHHHHHHHTSHHHHHHHHHHHHHHHHTT-SSSSEEEETTC....EEEESSSSHHHHH CS
        DSBA  95 aagaeglaekvvrelfealwsegqaitddqellevaekaGldaeeldealeseavkeavrentaaaqslgvtGvPtvvvdgk....rmvfGadrldtla 189
                 a+g e+   k+  ++fea+++ +q++++ +++++v+ +aG++ e++d+a++s+ vk+ v+++++aa++l+++GvP+++v+gk     + ++++++d + 
  CTQ27866.1  99 ALGVED---KITAPMFEAVQK-NQTVQSVADIRKVFVDAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLQGVPAMYVNGKyqlnPQGMDTSNMDVFV 193
                 *****9...9**********9.777777778**************************************************988888889999999888 PP

                 HHH CS
        DSBA 190 dal 192
                  ++
  CTQ27866.1 194 AQY 196
                 776 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   3.9e-13   1.4e-09      16     157 ..      40     184 ..      34     189 .. 0.82

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 3.9e-13
                    EEEEEE-TT-HHHHHHHHHHH..HHHHHHHHTT.SEEEEEEE-....---STTTHHHHHHHTT--TTHHHHHHHHHHHHTHHHHTTS-.HHHHH.. CS
  Thioredoxin_4  16 tvieyedlrCphCakfeeeve..klleeyidtG.kvkfiirdf..pldkekeslkaamaarcageespeaflaikallysqqeewaes.lkelaae 105
                     v e+ ++ CphC +fee +     +++ + +G k+   + +f  pl k+   ++a  +a ++g e++   ++++a  +++q+  + +   ++  +
     CTQ27866.1  40 QVLEFFSFYCPHCYQFEEVLHvsDNVRQKLPEGtKMTKYHVEFlgPLGKDL--TQAWAVAIALGVEDKITAPMFEA-VQKNQTVQSVAdIRKVFVD 132
                    588***************976658999999***999999999956666666..89999999999888555566666.5555544444426677788 PP

                    ...HHHHHTS-------HHHHHHHHHHHHHHT--SS-EEEETTEEE-TT--H CS
  Thioredoxin_4 106 aldkdekfeacleeekldalveaeskeakkagiestPtfiingekveepqty 157
                    a+ k e+ +a+ ++  ++ lv+++ k a  ++++++P +++ng+   +pq +
     CTQ27866.1 133 AGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLQGVPAMYVNGKYQLNPQGM 184
                    *******************************************986667655 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.2   7.2e-05      0.26      19      41 ..      38      60 ..      28     128 .. 0.79
   2 ?    3.9   0.0     0.014        50      54      91 ..     149     184 ..     135     197 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.2e-05
                 SEEEEEEE-TTSHHHHCHHHHHH CS
  Thioredoxin 19 klvlveFyApwCghCkalaPele 41
                 ++ ++eF++ +C+hC +++ +l+
   CTQ27866.1 38 EPQVLEFFSFYCPHCYQFEEVLH 60
                 67899**********99998764 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.014
                  EEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS CS
  Thioredoxin  54 akvdvdenedlakkyevegiPtlklfkngkevkkyega 91 
                  +k  v ++e+ a++++ +g+P++  + ngk++ + +g 
   CTQ27866.1 149 VKSLVAQQEKAAADLQLQGVPAM--YVNGKYQLNPQGM 184
                  55557789999***********9..5666666555555 PP

>> Lpp-LpqN  Probable lipoprotein LpqN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     5e-06     0.018      97     136 ..     156     195 ..     148     205 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5e-06
                 EEEEEE---BTTB-EEEEEEEEECTTEEEEEEEEEEEEEE CS
    Lpp-LpqN  97 katdgstadlsGfpssqieGtYdkdgkrlavaqrtViitg 136
                 +++ +   +l+G+p++ ++G+Y+++ + + +++  V++ +
  CTQ27866.1 156 QEKAAADLQLQGVPAMYVNGKYQLNPQGMDTSNMDVFVAQ 195
                 5566677789**************************9887 PP

>> DUF3088  Protein of unknown function (DUF3088)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.7e-05     0.097      20      43 ..      46      69 ..      28      78 .. 0.92
   2 ?   -1.3   0.0      0.52   1.9e+03      22      49 ..     142     169 ..     126     173 .. 0.76
   3 ?   -2.2   0.0      0.97   3.5e+03      64     101 ..     164     200 ..     158     205 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
     DUF3088 20 rfyCpdcaaleGllasfPalaekl 43
                +fyCp+c ++e +l ++ ++++kl
  CTQ27866.1 46 SFYCPHCYQFEEVLHVSDNVRQKL 69
                69**************99999987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.52
     DUF3088  22 yCpdcaaleGllasfPalaekldvervd 49 
                   +++  ++ l+a + + a+ l+++ v+
  CTQ27866.1 142 AAWNSFVVKSLVAQQEKAAADLQLQGVP 169
                 5788999999999999999999888776 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.97
     DUF3088  64 enqslPvLvLadgaakaapvkakeaegrrfiedkkrIl 101
                 + q++P++  + +  + +p+ + +++   f+++ ++ +
  CTQ27866.1 164 QLQGVPAMYVNGKY-QLNPQGMDTSNMDVFVAQYADTV 200
                 56778877666666.55666666677777776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1695.39
//
Query:       CTQ27867.1  [L=299]
Description: putative endonuclease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-13   48.0   0.0    1.2e-12   47.6   0.0    1.2  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   6.9e-17   1.2e-12       3     120 ..      75     211 ..      73     229 .. 0.79

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 6.9e-17
  Acyltransferase   3 rvtglenlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidR..........ksnaraagslenis 86 
                       v+gle l++k+ ++l++NH s++D+++l +l+ ++++ ++ +  +k++l+++p++g ++++l++ f++R          + ++++ ++  +  
       CTQ27867.1  75 DVQGLEGLNKKNWYLLISNHHSWADIVVLCVLF-RKHI-PMNKYFLKQQLAWVPFIGLACWALDMPFMRRysrsylirhpERRGKDVETTRRSC 166
                      6999*************************9977.6665.7999999*******************************65544444445555555 PP

  Acyltransferase  87 elleegkl.vviFPEGtrsre..........gellpfkkGlvrla 120
                      e++++ +  +v F EG r+ e           +llp+k+  + +a
       CTQ27867.1 167 EKFRAHPTtIVNFVEGSRFTEekkretrspyHNLLPPKAAGIAMA 211
                      5*****999*******88877555555555444577766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2582.63
//
Query:       CTQ27868.1  [L=930]
Description: fused DNA polymerase I 5'-_3' exonuclease; 3'-_5' polymerase; 3'-_5' exonuclease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-159  531.4   0.0   1.7e-159  530.9   0.0    1.2  1  DNA_pol_A       DNA polymerase family A
    1.7e-54  184.0   0.0    3.4e-54  183.0   0.0    1.5  1  5_3_exonuc_N    5'-3' exonuclease, N-terminal resolvase-like 
    1.1e-42  145.8   0.1    1.9e-42  145.0   0.1    1.4  1  DNA_pol_A_exo1  3'-5' exonuclease
    5.5e-31  107.0   0.0    1.6e-30  105.6   0.0    1.9  1  5_3_exonuc      5'-3' exonuclease, C-terminal SAM fold
      0.009   15.8   1.2      0.038   13.9   0.1    2.5  2  HHH             Helix-hairpin-helix motif
  ------ inclusion threshold ------
      0.036   13.9   0.0      0.083   12.7   0.0    1.5  1  Prok-E2_E       Prokaryotic E2 family E
      0.038   14.6   0.0       0.14   12.8   0.0    2.0  1  HHH_5           Helix-hairpin-helix domain
       0.08   13.0   0.0       0.26   11.4   0.0    1.8  1  HHH_2           Helix-hairpin-helix motif
       0.12   12.9   0.0       0.54   10.8   0.0    2.1  2  XPG_N           XPG N-terminal domain


Domain annotation for each model (and alignments):
>> DNA_pol_A  DNA polymerase family A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  530.9   0.0  8.5e-163  1.7e-159       4     375 ..     554     927 ..     552     928 .. 0.98

  Alignments for each domain:
  == domain 1  score: 530.9 bits;  conditional E-value: 8.5e-163
                 HHHHHHHHHHHHHHHHHHHHHHSSC.-STTTCCCCHHHHTCCCCS.TTSBETTS.BTTTCCHHHHHT.S.CHHHHHHHHHHHHHHHHHTTTTGGGCCBT CS
   DNA_pol_A   4 leelseeleeeleeleeeiyelage.fnlnSpkqlaevLfeklklpekkktktg.ystdeevLekla.khplaklileyrelsklkstyvdallklink 99 
                 l++ s+e++++l ele++++e+age fnl+S+kql+++Lfek ++++ kkt+ g +st+eevLe+la ++pl+k+ileyr l+klksty+d+l+ +in+
  CTQ27868.1 554 LHAHSQEIAQRLVELEQRAHEIAGEvFNLSSTKQLQTILFEKQGIKPLKKTPGGaPSTSEEVLEELAlDYPLPKVILEYRGLAKLKSTYTDKLPLMINP 652
                 67889*******************77*************************9999***********988****************************** PP

                 TTSEE--EEESSSSSSSS-EEESS-GGGS-TTSCCHHHHHHTBCG.TTCCEEEEEEETTHHHHHHHHHCT.HHHHHHHHTTH-HHHHHHHHHCTS.GGG CS
   DNA_pol_A 100 ktgrihtsfnqtvtatGrlsssepnlqnipirteegrriRkafvaeegghvllsaDysqiELRilAhlsgdeklieafkegeDiHsktAsevfgvpvee 198
                 ktgr+hts++q+vtatGrlss++pnlqnip+r+eegrriR+af+a+e+ +v++saDysqiELRi+Ahls+d+ l++af+eg+DiH++tA+evfg p+++
  CTQ27868.1 653 KTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPED-YVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 750
                 **********************************************96.56************************************************ PP

                 HHHHHHHHHHHHHHHHHTT--HHHHHHHHTSSHHHHHHHHHHHHHHSHHHHHHHHHHHHHCCCECCEEETTCSEEEECTTT-CCHCCCHHHHHHHHHHH CS
   DNA_pol_A 199 vtkeqRrqaKainfGiiYGagakgLaeqlgiseeeAkefiekyferypgvksyleetleeakekgyvetllgrrrylpeiksknaalrekaeraavNap 297
                 v++eqRr+aKainfG+iYG++a+gLa+ql+i+++eA+++++ yferypgv +y+e+t ++ake+gyvetl grr ylp+iks+n a+r+ aeraa+Nap
  CTQ27868.1 751 VSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAP 849
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHHHSSS--EEEEEEESSCC CS
   DNA_pol_A 298 iQGsAaDiiklamikieealkeeklkarlllqvHDElvfevpeeeveevaelvkeamesaveldvplkvevkvGknWg 375
                 +QG+AaDiik ami+++e+l++ek + r+++qvHDElvfev+++e+++v++ ++e me++++l vpl vev++G+nW+
  CTQ27868.1 850 MQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENSTTLAVPLLVEVGSGENWD 927
                 *****************************************************************************7 PP

>> 5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.0   0.0   1.7e-57   3.4e-54       2     159 .]       9     170 ..       8     170 .. 0.96

  Alignments for each domain:
  == domain 1  score: 183.0 bits;  conditional E-value: 1.7e-57
  5_3_exonuc_N   2 llLiDgsslifRayyal..lttsdgeptnavygflnmllklleeekpthlavvfDakkktfRhelypeYKanReetpeelkeqlplikevlealgik 96 
                   l+L+Dgss+++Ray+a+  lt+s gept+a+yg+lnml +l+ +++pth++vvfDak+ktfR+el+++YK++R+++p++l++q++ ++++++a+g++
    CTQ27868.1   9 LILVDGSSYLYRAYHAFppLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAVVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLP 105
                   89**************99*************************************9999************************************** PP

  5_3_exonuc_N  97 vlevegyEADDvigtlakraeeeg..vvivsgDkDllQlvednvrvldvkkeelldeeevaekyg 159
                   ++ v+g+EADDvigtla++ae++g  v i +gDkD++Qlv++ ++++++ ++++l+++ev+ kyg
    CTQ27868.1 106 LMAVPGVEADDVIGTLAREAERAGrpVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYG 170
                   *******************9965457***************9******555778*********97 PP

>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0   0.1   9.3e-46   1.9e-42       1     176 []     332     519 ..     332     519 .. 0.97

  Alignments for each domain:
  == domain 1  score: 145.0 bits;  conditional E-value: 9.3e-46
                     EEEEHSHHHHHHHHHHHTTSSEEEEEEEEE-SSSTTSSEEEEEEEEECSSEEEEEECTTTTTT-.......HGHHHHHHHT-TTSEEEESSHHHH CS
  DNA_pol_A_exo1   1 yeivtdeeeleelieelknlkvvavDtEttsldlisatlvliliqlgekeeayiidplelgddv.......alealkrlledenitkvghnakfD 88 
                     y+++ de++l  +i +lk+++ +a+DtEt+sld isa+ v+ +++++ + +ay+++ +++ d++       +l++lk+llede++ kvg+n+k+D
      CTQ27868.1 332 YVTILDEATLLTWIDKLKQAPLFAFDTETDSLDNISANMVGLSFAVEPGVAAYVPVAHDYLDAPdqiprerVLTLLKPLLEDEKVLKVGQNLKYD 426
                     7899******************************************************************************************* PP

                     HHHHHHHHTS--SSE.EEHHHHHHHTTHSTT.SSHHHHHHHHHSB---GHCCTTSSTTT....SSS-HHHHHHHHHHHHHTHHHHHHHHHHHHH CS
  DNA_pol_A_exo1  89 levlardfgielenl.fdtmlaayvldyers.hsLdsLaekylgdleldkeeqiakwqk....arplleeqllYAaeDadvllrlfkkLtkele 176
                     + +la+ ++iel+++ fdtml +y+ld   + h++dsL +++l++ ++++ee+++k+++    +++ lee+++YAaeDadv+l+l+ k++++l+
      CTQ27868.1 427 RGILAN-YDIELRGIaFDTMLESYILDSVAGrHDMDSLSDRWLKHKTITFEEIAGKGKNqltfNQIALEEAGRYAAEDADVTLQLHLKMWPKLQ 519
                     ******.*******85777********99889***********************************************************995 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.0   7.9e-34   1.6e-30       1      95 [.     171     271 ..     171     273 .. 0.95

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 7.9e-34
  5_3_exonuc   1 vkPeqiidlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenldelke......kklkekLeenkeearlskkLatiktdvpleleledlklke 93 
                 v+Pe iid++aL+GDssDnipGvpg+GektA++Ll+  g l++++++ ++++e      k++++kLe+nk+ a+ls++Latiktdv+lel+ e+l++++
  CTQ27868.1 171 VPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAElsfrgaKTMAAKLEQNKDVAYLSYQLATIKTDVELELTCEELEVQP 269
                 79********************************************99998887888878899**********************************99 PP

  5_3_exonuc  94 pd 95 
                 p 
  CTQ27868.1 270 PA 271
                 86 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.81   1.6e+03      13      19 ..     106     112 ..     106     112 .. 0.95
   2 !   13.9   0.1   1.9e-05     0.038      16      28 ..     193     205 ..     191     207 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.81
                 HHTSTT- CS
         HHH  13 LlalPGV 19 
                 L+a+PGV
  CTQ27868.1 106 LMAVPGV 112
                 9*****9 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.9e-05
                 STT-SHHHHHHHH CS
         HHH  16 lPGVGpktAeaIl 28 
                 +PGVG+ktA+a l
  CTQ27868.1 193 VPGVGEKTAQALL 205
                 9**********98 PP

>> Prok-E2_E  Prokaryotic E2 family E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.2e-05     0.083       7      51 ..     466     511 ..     461     521 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.2e-05
   Prok-E2_E   7 efLsekglkyeevedggqrglllkefslpe.gkynvaevdvlilip 51 
                 ++L++k +++ee+  +g++ l ++++ l+e g+y+++ +dv +++ 
  CTQ27868.1 466 RWLKHKTITFEEIAGKGKNQLTFNQIALEEaGRYAAEDADVTLQLH 511
                 79**************************86489********99885 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     7e-05      0.14       6      41 ..     192     225 ..     179     234 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7e-05
                 TSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTST CS
       HHH_5   6 svsGiGpktAlallsaGiesvedlaaadveeLakip 41 
                 +v+G+G+ktA all +  + ++ l a ++e++a++ 
  CTQ27868.1 192 GVPGVGEKTAQALLQG-LGGLDTLYA-EPEKIAELS 225
                 5888888888888877.554555444.355555555 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013      0.26       7      31 ..     192     216 ..     190     226 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
       HHH_2   7 GIrhVGektAklLakrFksldaLkk 31 
                 G++ VGektA++L +  + ld L +
  CTQ27868.1 192 GVPGVGEKTAQALLQGLGGLDTLYA 216
                 89*******************9963 PP

>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00027      0.54      26      98 ..       7      81 ..       3      83 .. 0.81
   2 ?   -3.4   0.0         7   1.4e+04      68      82 ..     345     359 ..     320     363 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00027
                TEEEEEEHHHHHHHHHHHSE.ETTEE-BS...-HHHHHHHHHHHHHHHTTEEEEEEE--S--GGGHHHHHHHHHHH CS
       XPG_N 26 gkklaiDaslwlyrfliavreqlgnalen...tshlmglfsrllrlldfgikPifVFdgkapdlkkeelekrserr 98
                ++ + +D+s +lyr+  a   +l n+  +     + ++ + r l+l++  ++ ++VFd k  +++ e  e+ ++ r
  CTQ27868.1  7 NPLILVDGSSYLYRAYHAFP-PLTNSAGEptgAMYGVLNMLRSLILQYQPTHAVVVFDAKGKTFRDELFEHYKSHR 81
                566779*********99876.4444444444478888999999********************9999998888765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7
                 HHHTTEEEEEEE--S CS
       XPG_N  68 lldfgikPifVFdgk 82 
                 + +++  P+f Fd +
  CTQ27868.1 345 IDKLKQAPLFAFDTE 359
                 457888999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (930 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 6697.35
//
Query:       CTQ27869.1  [L=210]
Description: GTP-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-20   71.3   0.0    9.3e-20   70.8   0.0    1.2  1  MMR_HSR1     50S ribosome-binding GTPase
      6e-09   36.0   0.1    0.00018   21.4   0.0    2.1  2  RsgA_GTPase  RsgA GTPase
    3.5e-06   26.6   0.1    5.8e-06   25.9   0.1    1.4  1  FeoB_N       Ferrous iron transport protein B
    0.00032   20.3   0.2      0.006   16.1   0.1    2.1  2  GTP_EFTU     Elongation factor Tu GTP binding domain
      0.001   19.1   0.0       0.19   11.8   0.1    2.3  2  Dynamin_N    Dynamin family
  ------ inclusion threshold ------
      0.046   13.2   0.0       0.12   11.8   0.0    1.7  2  SRPRB        Signal recognition particle receptor beta subuni
       0.05   12.9   0.1        4.1    6.6   0.0    2.1  2  Septin       Septin


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   3.6e-23   9.3e-20       1     114 []      28     146 ..      28     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 3.6e-23
                 EEEEEESTTSSHHHHHHHHHTS..TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCS......SHHHHHH.HHHHHHHHHHCT.SEEEEEEETTTTC CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge..kaivsdkpgtTrdinegrvklkgkeielvDtpGli......egaseek.glgkaflaleea.dlillvvdaseek 89 
                 eva++Gr+N+GKS+ +n+lt++   a++s++pg T+ in ++v+++    +lvD+pG +      e+ + ++ +   ++l+++ + + +++++d++ + 
  CTQ27869.1  28 EVAFAGRSNAGKSSALNTLTNQknLARTSKTPGRTQLINLFEVAEG---KRLVDLPG-YgyaqvpEEMKIKWqRALGEYLEKRLClKGLVVLMDIR-HP 121
                 69*******************86569*****************943...49******.7333332355555553344444444445********99.88 PP

                 SHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  90 lkpldeeleelleeakkplilvlnk 114
                 lk+ld+++ e+  e++++++++l+k
  CTQ27869.1 122 LKDLDQQMIEWAVESDIQVLVLLTK 146
                 ************9999999999887 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   7.2e-08   0.00018      89     161 ..      17      82 ..       1      88 [. 0.71
   2 !   12.8   0.0   3.2e-05     0.083      37      98 ..     128     194 ..     110     199 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 7.2e-08
                  THHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-SS CS
  RsgA_GTPase  89 gleelkellkdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPGf 161
                  ++++l +   +  ++++G S +GKS+ +n+l+++++   + +s++   G+  T+  +l+e+aeg  l+D PG 
   CTQ27869.1  17 DIRHLPADT-GIEVAFAGRSNAGKSSALNTLTNQKN--LARTSKT--PGR--TQLINLFEVAEGKRLVDLPGY 82 
                  444544443.33468*****************9954..4455654..455..999*****************7 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.2e-05
                  HHHHHHHHTT-EEEEEEE-GGG--HHH...HHHHHHHHHHHTT..SEEEE--TTTHTTHHHHHHHCT CS
  RsgA_GTPase  37 rfLvlaeekgiepvivlnKiDlleeee...eleelkeelealg..yevllvsaktkegleelkellk 98 
                  +++  a e++i+++++l+K+D l +     +++ ++e++ a++  ++v   s+ +k+g+++l+++l+
   CTQ27869.1 128 QMIEWAVESDIQVLVLLTKADKLASGArkaQVNMVREAVLAFNgdVQVEPFSSLKKSGVDKLRQKLD 194
                  445567899************99988766667777776666653388888999999******99987 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   2.3e-09   5.8e-06       2     155 ..      28     192 ..      27     193 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 2.3e-09
                 EEEEEESTTSSHHHHHHHHHTTS..EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH.....CTS.SSEEEEEEEGGGHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak..qkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardfll.....eee.pdvvvnvvdatnle 92 
                 +va++G  n+Gk++ +n+lt++k   + +  pG t   +  ++    +  ++vDlPG Y   ++ ee k+  +  l     ++   + +v ++d  +  
  CTQ27869.1  28 EVAFAGRSNAGKSSALNTLTNQKnlARTSKTPGRTQLINLFEVA---EGKRLVDLPG-YGYAQVPEEMKIKWQRALgeyleKRLcLKGLVVLMDIRHPL 122
                 79******************998445889999999777766666...67799*****.78888888888876655422211332256789999999999 PP

                 HHH..HHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHH.....HHHHHTS-EEEEBTTTTBTHHHHHHH CS
      FeoB_N  93 rnL..yLtlqllelgvpvvlalnmideaekkgieidlkk.....LsekLgvpvvktsakkkegieellka 155
                 ++L  +++   +e +++v++ l + d++ +   + +++      L+ + +v+v ++s+ kk+g+++l+++
  CTQ27869.1 123 KDLdqQMIEWAVESDIQVLVLLTKADKLASGARKAQVNMvreavLAFNGDVQVEPFSSLKKSGVDKLRQK 192
                 9884446667889999**********98765554444440011155556899*************99886 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.048   1.2e+02       5      31 ..      28      54 ..      25      73 .. 0.81
   2 !   16.1   0.1   2.3e-06     0.006      96     191 ..     111     196 ..     106     199 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.048
                EEEEEESTTSSHHHHHHHHHHHTTSSC CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLlyktgais 31
                 ++++g  ++GK++ + +L+ +++  +
  CTQ27869.1 28 EVAFAGRSNAGKSSALNTLTNQKNLAR 54
                6889999************98876544 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.3e-06
                 EEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHH CS
    GTP_EFTU  96 gavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvel 191
                 g v+++d+++  +   +++++ a + ++++ v+++K+D+l +  ++ + ++ ++         + +++g  +v+v + S+lk+ gv++l + l+++
  CTQ27869.1 111 GLVVLMDIRHPLKDLDQQMIEWAVESDIQVLVLLTKADKLASGARKAQVNMVREA--------VLAFNG--DVQVEPFSSLKKSGVDKLRQKLDSW 196
                 778999999999999999**********************777777666666666........468888..5****************99998876 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   7.3e-05      0.19       1      28 [.      29      56 ..      29      66 .. 0.85
   2 !    5.1   0.0    0.0081        21     102     166 ..      73     145 ..      62     161 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.3e-05
                EEEEEBTTTTHHHHHHHHHTS--S---S CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgp 28
                +a+ G  ++GKSS ln L+ ++ l r +
  CTQ27869.1 29 VAFAGRSNAGKSSALNTLTNQKNLARTS 56
                6889***************999888765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0081
                 SEEEEE---B-SSSGTTS......HHHHHHH.STT..EEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE CS
   Dynamin_N 102 gltlvDlPGldsvnkrdq......elvkeyi.kka..diilavtsanhdlsnsealflarevdpkgkrtivvlt 166
                 g  lvDlPG+   ++ ++      + + ey+ k+   + ++++++  h l++ +++ ++ +v + +  ++v+lt
  CTQ27869.1  73 GKRLVDLPGYGYAQVPEEmkikwqRALGEYLeKRLclKGLVVLMDIRHPLKDLDQQMIEWAV-ESDIQVLVLLT 145
                 5579****988766666666999877777774443223466777777777766655544433.33444444444 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.8e-05      0.12       6      59 ..      29      82 ..      26     127 .. 0.75
   2 ?   -2.0   0.0      0.83   2.1e+03     131     153 ..     128     151 ..     123     190 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.8e-05
                EEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG....GGTT-SEEEETT- CS
       SRPRB  6 vllvGlsdsGKTslftrLttdsvkktvtSqessaalkvk.sekgskltliDfPGh 59
                v ++G s++GK s ++ Lt+++ + + tS  +  ++ ++  e  + ++l+D+PG 
  CTQ27869.1 29 VAFAGRSNAGKSSALNTLTNQK-NLARTSKTPGRTQLINlFEVAEGKRLVDLPGY 82
                679***************9764.4566777777776663135677889*****96 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.83
                 HHHHHHHHHHHHHHHH.CHHHHHH CS
       SRPRB 131 klikdaLEkElnkiie.rrskalk 153
                 ++i  a+E++++ ++  +++  l 
  CTQ27869.1 128 QMIEWAVESDIQVLVLlTKADKLA 151
                 567777777777655413333333 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0016       4.1       5      33 ..      27      55 ..      24      84 .. 0.75
   2 ?    4.4   0.0    0.0073        19     124     178 ..     119     174 ..     105     201 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0016
                EEEEEEEBTTSSCCCCCCTTSSSS----- CS
      Septin  5 ftlmvvGesglGkttlintlfetdlieee 33
                + +  +G+s  Gk++ +ntl +++   ++
  CTQ27869.1 27 IEVAFAGRSNAGKSSALNTLTNQKNLART 55
                567789**************988765543 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0073
                 SSSS-HHHHHHHH.HHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT---- CS
      Septin 124 ghglkpldvelmk.klsekvnliPviaKaDtltkeElkefKkkireeleeeeikiy 178
                  h lk+ld +++  ++++ + ++ +++KaD l +   k+  +++re + + + ++ 
  CTQ27869.1 119 RHPLKDLDQQMIEwAVESDIQVLVLLTKADKLASGARKAQVNMVREAVLAFNGDVQ 174
                 6889****9999757999****************9999999999998877665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 1732.04
//
Query:       CTQ27870.1  [L=168]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-55  187.6  14.8    1.3e-55  187.4  14.8    1.0  1  YihI      Der GTPase activator (YihI)


Domain annotation for each model (and alignments):
>> YihI  Der GTPase activator (YihI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.4  14.8   7.3e-60   1.3e-55       3     156 .]      10     164 ..       8     164 .. 0.93

  Alignments for each domain:
  == domain 1  score: 187.4 bits;  conditional E-value: 7.3e-60
        YihI   3 akkkkktreeldaearerKrkkkrkGlksGsRnneeaskeqkkkskkkkDpRiGSkkpvpLvveekvkaekkkkkkaekekekklspeqeLakLEnder 101
                  k+ +k+reel++ear+rKr+kk++G+++GsR+n  +++++ kk+++++DpR+GSkkp+pL v+e+++++ k++k+  k+++++lsp+ eL+ LEnder
  CTQ27870.1  10 GKSGRKSREELNQEARDRKRQKKHRGHAAGSRANGGDAASAGKKQRQAQDPRVGSKKPIPLGVSESSAPAPKQHKP--KSEKPMLSPQAELELLENDER 106
                 57789**************************************************************999987774..55667**************** PP

        YihI 102 LnaLLdrLeegekLskedqkyvdekLdrideLmeeLGie...ddeeeeekdddllqlf 156
                 L+aLL+rLeeg +L++e+q++vd kLdrideLm++LG++   +deeeee+++d+++l+
  CTQ27870.1 107 LDALLERLEEGGTLNAEEQSWVDAKLDRIDELMQQLGLSyddEDEEEEERQEDMMRLL 164
                 ***************************************97666777779*****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1568  (0.0874561); expected 358.6 (0.02)
Passed bias filter:                      691  (0.0385409); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1248.16
//
Query:       CTQ27871.1  [L=457]
Description: coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-18   66.9   0.0    4.8e-18   66.1   0.0    1.4  1  Radical_SAM  Radical SAM superfamily
    4.8e-10   39.3   0.0    2.2e-09   37.2   0.0    2.3  1  HemN_C       HemN C-terminal domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0   5.3e-22   4.8e-18       2     164 ..      57     226 ..      56     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 5.3e-22
                  EEESEESS--TTTSCCTT....HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS........TTHHHHHHHHHHTC....CCTEEEEEE CS
                  xxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxx....xxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpet....vrregrgrslsveeileevkelkaekgvkevilgggeplly........pdfvellerlakla....vpgiritve 83 
                  v+ ++C+  C fC +++     +++ + + ++  +ei++ +  ++ + +vk++++ggg+p++          d+ +             +++ +i++e
   CTQ27871.1  57 VHIPFCHKLCYFCGCNKIvtrqQHKADQYLDVLEQEIIHRAPLFATR-QVKQLHWGGGTPTYLnkaqisrlMDLLR--------ShfhfSAEAEISIE 145
                  789***************77777777777777777788888888544.4************996555444433444........23555445555555 PP

                  ECSSCHGHHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSET.EEEEEEEBTTTSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  84 tngtlpdeeklerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikr.vvdrivglpGendeeleell 164
                  + +  ++ ++l+ l+  g++r+s+g++ +++e v++l+nr ++   + ++l  +re g+ + ++d i+glp ++ e +  +l
   CTQ27871.1 146 VDPREIELDVLDHLRAEGFNRLSMGVQDFNKE-VQRLVNREQDEAFIFDLLNHAREIGFTStNIDLIYGLPKQTPESFAFTL 226
                  555555569***********************.******************************************9987665 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   2.5e-13   2.2e-09       1      66 []     363     431 ..     363     431 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 2.5e-13
      HemN_C   1 lspedrleEeiilgLRlreGldlaafeqrfgld....leellaaaleklqeqGLLeldggrlrltprGrl 66 
                 l+++d l++ +i  L++++ ld+aa+e++  +d    ++e+l+  l++l  +GL+  d++ +++t +Grl
  CTQ27871.1 363 LTRDDCLRRDVIKALICNFQLDIAAVEAQWDVDfasyFAEDLKL-LAPLAHDGLVAVDDKVIQVTAKGRL 431
                 7899*****************************99999999666.***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3368.87
//
Query:       CTQ27872.1  [L=469]
Description: response regulator in two-component regulatory system with GlnL, nitrogen regulation (EBP family) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-71  237.0   0.0    1.3e-70  236.4   0.0    1.3  1  Sigma54_activat  Sigma-54 interaction domain
    7.1e-31  106.7   0.0    1.4e-30  105.7   0.0    1.5  1  Response_reg     Response regulator receiver domain
      5e-24   85.0   0.0    2.7e-23   82.6   0.0    2.1  1  Sigma54_activ_2  Sigma-54 interaction domain
    7.7e-17   60.8   2.8      2e-15   56.3   1.5    2.5  2  HTH_8            Bacterial regulatory protein, Fis family
    1.7e-08   34.6   0.0    3.9e-08   33.4   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
    1.8e-05   24.9   0.0    3.1e-05   24.2   0.0    1.4  1  AAA_2            AAA domain (Cdc48 subfamily)
     0.0014   19.1   0.0     0.0039   17.6   0.0    1.8  1  AAA              ATPase family associated with various cellul
  ------ inclusion threshold ------
       0.01   15.2   0.1          1    8.7   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.022   14.3   0.0        0.1   12.1   0.0    2.0  2  AAA_7            P-loop containing dynein motor region
      0.068   12.2   0.0       0.16   11.0   0.0    1.5  1  MCM              MCM P-loop domain
      0.085   13.2   0.5       0.23   11.8   0.1    2.1  1  AAA_16           AAA ATPase domain
       0.12   12.8   0.0        0.4   11.1   0.0    1.9  1  FleQ             Flagellar regulatory protein FleQ


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.4   0.0     9e-74   1.3e-70       1     167 [.     140     306 ..     140     307 .. 0.99

  Alignments for each domain:
  == domain 1  score: 236.4 bits;  conditional E-value: 9e-74
                      ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTT CS
  Sigma54_activat   1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadg 94 
                      +ige +a++++++ i ++ ++++svli+GesGtGKel+a+a+h++s+r+++pf+a+n+aaip++l+eseLFGhekGaFtGA++ ++G+fe+adg
       CTQ27872.1 140 IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRSKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTVRQGRFEQADG 233
                      799******************************************************************************************* PP

                      SEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEE CS
  Sigma54_activat  95 GtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnviei 167
                      GtlfLDeig++pl++Q++Llrvl +g+++rvG+ +++kvdvriiaat+++le+ v+egkfredL++rlnvi++
       CTQ27872.1 234 GTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRV 306
                      **********************************************************************987 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.0   9.3e-34   1.4e-30       3     111 ..       8     115 ..       6     116 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.7 bits;  conditional E-value: 9.3e-34
                   EESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEEE CS
  Response_reg   3 ivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddfls 99 
                   ivdDd  +r +l+++l+ +g+ +++++e+g+e+l+ l ++++d++l Di+mpgmdGl llk+i++++p lpvii+tahs+ + av a++ ga+d+l 
    CTQ27872.1   8 IVDDDSSIRWVLERALTGAGL-SCTTFESGNEVLDALTTKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLP 103
                   9********************.*************************************************************************** PP

                   SSG-HHHHHHHH CS
  Response_reg 100 KpfdpeeLlkal 111
                   Kpfd++e ++ +
    CTQ27872.1 104 KPFDIDEAVALV 115
                   *****9987765 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   1.8e-26   2.7e-23       1     138 []     141     311 ..     141     311 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 1.8e-26
                      X---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.......................HHHHHHTTTS CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.......................ldlleqakgg 71 
                      +g+++a+q+ ++ +  +++s+  v++ Ge G+gkelvA +Lh  s +  ++f+  + a++p                       +  +eqa+gg
       CTQ27872.1 141 IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRSKAPFIALNMAAIPkdlieselfghekgaftgantvrQGRFEQADGG 234
                      6999*********************************************************777777777777777777777777777779*** PP

                      EEEEEE-TT--HHHHHHHHHHHHH..........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  72 tLylkdiadlskaeqkeLlellak..........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      tL+l +i d++ + q++Ll +la             k ++r+++++ ++leq +++g+f e L+ +L  +r+h+PpL
       CTQ27872.1 235 TLFLDEIGDMPLDVQTRLLRVLADgqfyrvggyaPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPL 311
                      ********************************963399**************************************9 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.052        77      24      35 ..     329     340 ..     322     341 .. 0.89
   2 !   56.3   1.5   1.3e-18     2e-15       3      42 .]     427     466 ..     425     466 .. 0.96

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.052
                 HHHHHTS-HHHH CS
       HTH_8  24 AArlLGisRrtL 35 
                 AAr+LG+  ++L
  CTQ27872.1 329 AARELGVEAKQL 340
                 9******99999 PP

  == domain 2  score: 56.3 bits;  conditional E-value: 1.3e-18
                 HHHHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHT CS
       HTH_8   3 eevEkelIeaALertgGnkskAArlLGisRrtLyrKLkkY 42 
                 +e+E+ l++ AL++t+G+k++AArlLG++R+tL+rKLk++
  CTQ27872.1 427 PEMERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKEL 466
                 799***********************************95 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   2.6e-11   3.9e-08       2     124 ..     164     284 ..     163     301 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2.6e-11
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEveraesevlnsLlslleerrll 95 
                 vl+ G++GtgK  +a  l +   +++   ++l+    ++dl+ +  +  ++ +++    vr++r     g +l+lDE+  ++ +v+ +Ll++l + +++
  CTQ27872.1 164 VLINGESGTGKELVAHALHRHSpRSKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTVRQGRfeqaDGGTLFLDEIGDMPLDVQTRLLRVLADGQFY 262
                 899******************9977777888888888888888888889999*********************************************** PP

                 ..-SSSEEE---......-EEEEEESS-- CS
       AAA_5  96 leeggelvkaknddllerfrviatanpld 124
                     g++  +k d     +r+ia+++++ 
  CTQ27872.1 263 --RVGGYAPVKVD-----VRIIAATHQNL 284
                 ..66666666655.....9****998765 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.1e-08   3.1e-05       2     126 ..     160     280 ..     159     318 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.1e-08
                 ----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHH...TTT-HHHHTTSEEEEETGGG-------------H CS
       AAA_2   2 piisilllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrliga...ppgyvgaeegGivllDEidKihpkessgadvSre 93 
                 + is+l+ g++g+Gk+++a al ++   +++ ++i +++ ++ +    +e   h    ++ga   ++g  ++++gG ++lDEi                
  CTQ27872.1 160 SSISVLINGESGTGKELVAHALHRHSP-RSKAPFIALNMAAIPKdlieSELFGHEKGAFTGAntvRQGRFEQADGGTLFLDEIGDMPL----------- 246
                 5689***********************.9**********9988844434444444444444411134555667777************........... PP

                 HHHHHHHHHHH--EE-----.--EE-TT-EEEEE CS
       AAA_2  94 gVqrdLLqileggtltdkqg.rkvdtknilfImt 126
                 +Vq+ LL++l +g+     g  +v+ +  ++ +t
  CTQ27872.1 247 DVQTRLLRVLADGQFYRVGGyAPVKVDVRIIAAT 280
                 **************99888888888775554443 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.6e-06    0.0039       1     111 [.     164     282 ..     164     304 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.6e-06
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS.....STTHHHHHHHHHHHHHHHTS....TSEEEEEETGGGHHHHHTTCCCHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk.....yvgesekkirelfkeakeka....kpsilfiDEidalaksrsgseseeeervvn 87 
                 vl+ G  GtGK l+a+a+ +++   +++f+ ++++ + ++     ++g+ +  + +  +  ++ +    +   lf+DEi  +  +            + 
  CTQ27872.1 164 VLINGESGTGKELVAHALHRHSprsKAPFIALNMAAIPKDlieseLFGHEKGAFTGANTV-RQGRfeqaDGGTLFLDEIGDMPLDV-----------QT 250
                 6899*****************65558*******999985566666444444444332221.222244434599********95555...........89 PP

                 HHHHHHHHTTTS........SSTEEEEEEESS CS
         AAA  88 qLlteldgvkkk........eskvivigatnr 111
                  Ll++l + + +        + +v +i+at++
  CTQ27872.1 251 RLLRVLADGQFYrvggyapvKVDVRIIAATHQ 282
                 99999988888888888888777999999987 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.017        26      24      47 ..     163     186 ..     157     201 .. 0.86
   2 ?    8.7   0.0   0.00068         1      93     130 ..     219     256 ..     211     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.017
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllp 47 
                   ++l+ G +G+GK ++a++l+   p
    CTQ27872.1 163 SVLINGESGTGKELVAHALHRHSP 186
                   6899*************9987555 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00068
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePl 130
                   g ++++ G    a  G LfLDE+ ++  +v   L + l
    CTQ27872.1 219 GANTVRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVL 256
                   77899*******************99998887765555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     7e-05       0.1      25      71 ..     153     199 ..     136     222 .. 0.86
   2 ?   -1.0   0.0      0.72   1.1e+03     157     178 ..     309     330 ..     297     333 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7e-05
       AAA_7  25 llelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsa 71 
                 ++  l +++ +vl+ G++GtGK ++++ l ++ +++k  ++ +n+ a
  CTQ27872.1 153 IIGRLSRSSISVLINGESGTGKELVAHALHRHSPRSKAPFIALNMAA 199
                 5667889999************************9999999998876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.72
       AAA_7 157 ppgggrneitpRllrhfnvlai 178
                 pp   r e  pRl rhf  +a 
  CTQ27872.1 309 PPLRERREDIPRLARHFLQIAA 330
                 66666666679******98876 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.16      54     146 ..     158     257 ..     152     292 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
                 BCSS-EEEEEESSTSTHHHHHHHHHHHSSSEE..EEESS.SSSSSHSSSEE....EEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHH CS
         MCM  54 lrgdinvllvgdpgtaKsqlLkyveklaprav..ytsgk.gssaagLtaav....vrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEam 145
                  r++i vl+ g++gt+K  + +++++ +pr+   ++  + ++   +L  +      +   tg  ++  G    ad+G + +De+  m  + ++ l+ ++
  CTQ27872.1 158 SRSSISVLINGESGTGKELVAHALHRHSPRSKapFIALNmAAIPKDLIESElfghEKGAFTGANTVRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVL 256
                 599*************************99872233333134445665543111145566777899*********************999999998887 PP

                 H CS
         MCM 146 E 146
                  
  CTQ27872.1 257 A 257
                 5 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00015      0.23      12      56 ..     150     193 ..     142     349 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00015
      AAA_16  12 LlsalervrsgrpelvllsGesGvGKsslvrellralekdggifl 56 
                 + ++++r+++++  +vl+ GesG+GK  ++ +l+r+  ++++ f+
  CTQ27872.1 150 VFRIIGRLSRSS-ISVLINGESGTGKELVAHALHRHSPRSKAPFI 193
                 556667777777.59*******************99988855444 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00027       0.4       4      81 ..       8      87 ..       6     118 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
        FleQ  4 vidddaerrrdletiLeFlgeeveavsseelsaaleesssealavilgsvs..sleealealaekdphlPvlllgesdea 81
                ++ddd++ r+ le  L+  g ++ +++s +   ++  ++   +++    +      ++l+++ +++p lPv++++ +++ 
  CTQ27872.1  8 IVDDDSSIRWVLERALTGAGLSCTTFESGNEVLDALTTKTPDVLLSDIRMPgmDGLALLKQIKQRHPMLPVIIMTAHSDL 87
                89*************************999866666666666777777777678899*****************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3441.14
//
Query:       CTQ27873.1  [L=349]
Description: sensory histidine kinase in two-component regulatory system with GlnG [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-17   64.5   0.0      2e-17   63.7   0.0    1.5  1  HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like A
    3.7e-14   52.5   0.3      2e-13   50.1   0.0    2.4  3  HisKA      His Kinase A (phospho-acceptor) domain
    9.8e-06   25.5   0.0    2.8e-05   24.1   0.0    1.7  1  PAS        PAS fold
    0.00022   21.5   0.0    0.00048   20.3   0.0    1.7  1  PAS_4      PAS fold
    0.00043   20.2   0.0     0.0014   18.6   0.0    1.8  1  PAS_8      PAS domain
    0.00065   19.9   0.0     0.0013   18.9   0.0    1.5  1  PAS_9      PAS domain
  ------ inclusion threshold ------
       0.02   13.6   0.1       0.03   13.1   0.1    1.2  1  DUF1688    Protein of unknown function (DUF1688)


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   7.9e-21     2e-17       2     110 ..     234     347 ..     233     349 .] 0.82

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 7.9e-21
                 HHHHHHHHHHHHHHHHHHH.HSTTTEEEEEEEE......EE....TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTT CS
   HATPase_c   2 dekrLrqiisnlvdNavkf.atkageieveika......se....ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmg 89 
                 d+++++q++ n+v Na+++  +++gei ++ ++      +        +i veDnG+Gip+  ++ lf ++++      + ggtGlGlsi+++l++++ 
  CTQ27873.1 234 DPDQIEQVLLNIVRNALQAlGPEGGEIILRTRTafqltlHGvryrLAARIDVEDNGPGIPPHLQDTLFYPMVS-----GREGGTGLGLSIARSLIDQHS 327
                 8999**************944488888555554443333124455689999******************9999.....5679**************9** PP

                 TEEEEEEETTTEEEEEEEEES CS
   HATPase_c  90 GeiwvesepgrGttftftlpl 110
                 G+i+++s p + t+f ++lp 
  CTQ27873.1 328 GKIEFTSWP-GHTEFSVYLPI 347
                 *****8888.6888*999986 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   7.9e-17     2e-13       3      59 ..     131     186 ..     129     192 .. 0.92
   2 ?   -2.2   0.0       1.7   4.5e+03      41      56 ..     196     211 ..     193     212 .. 0.85
   3 ?   -2.8   0.0       2.7   6.9e+03      24      45 ..     218     246 ..     217     254 .. 0.42

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 7.9e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlL 59 
                 ++++ g+aHE+++PL +++g+a++L++    ++ l ey ++i+++a+rl++lv++lL
  CTQ27873.1 131 RDLVRGLAHEIKNPLGGLRGAAQLLSKA-LPDPALTEYTKVIIEQADRLRNLVDRLL 186
                 79***********************774.6789**********************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHHHH CS
       HisKA  41 letiesearrldhlve 56 
                  e+i++ a+r+ +lv+
  CTQ27873.1 196 TESIHKVAERVVKLVS 211
                 6899999****99985 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.7
                 HHHHHC.........T-HSSCHHHHHHHH CS
       HisKA  24 aeaLkre.......gklteelkeyletie 45 
                 +++++++       +  +++ ++ l  i+
  CTQ27873.1 218 VKLIRDYdpslpelPHDPDQIEQVLLNIV 246
                 55666654444333222233333333333 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.1e-08   2.8e-05       5      94 ..      11      97 ..      10     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.1e-08
                HHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEE CS
         PAS  5 aileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfklrdgrpihlevras 94
                +il+sl++ i++vD d  + ++N+aa++ll  s   + g +l +l++  +      l+++ l++g+ +++ e+++   dgr   l ++a 
  CTQ27873.1 11 QILNSLINSILLVDDDLAVHFANPAAQQLLAQSSRKLFGTPLPELLSYFS--LNIGLMQESLQAGQGFTDNEVTLVI-DGRSHILSLTAQ 97
                69********************************************9754..4888999999999999999999999.**9998888775 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.9e-07   0.00048       1      85 [.      13      96 ..      13     131 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.9e-07
       PAS_4  1 ldslpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll.pgeerhyelrl 85
                l+sl   ++ +d+d+ v +aN+aa++l++ +   l G +l ell+          +++ l+ ++  ++ e++l  +g+ ++++l++
  CTQ27873.1 13 LNSLINSILLVDDDLAVHFANPAAQQLLAQSSRKLFGTPLPELLS--YFSLNIGLMQESLQAGQGFTDNEVTLViDGRSHILSLTA 96
                5778888999********************************987..566666666666666666666666655666666666665 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   5.3e-07    0.0014       5      57 ..      11      60 ..      10      73 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.3e-07
       PAS_8  5 alfesspdgiavvdlgdrivdvNqaalellGysadlkgellgqllpvlrplle 57
                ++++s+ ++i++vd++  + ++N+aa++ll   a+++++l+g+ lp+l +++ 
  CTQ27873.1 11 QILNSLINSILLVDDDLAVHFANPAAQQLL---AQSSRKLFGTPLPELLSYFS 60
                578899999*****7779************...89*******99999888776 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   5.1e-07    0.0013       2      84 ..      18      98 ..      17     114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5.1e-07
       PAS_9  2 dgilidnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrkkerevevvlirkngetfwvlltasp 84
                ++il++++d  + +aN+aa +ll +s++ + g+++ +l++  + +   +++ l++g+   ++++ v    +g+     lta +
  CTQ27873.1 18 NSILLVDDDLAVHFANPAAQQLLAQSSRKLFGTPLPELLSYFSLNIGLMQESLQAGQ--GFTDNEVTLVIDGRSHILSLTAQR 98
                6899999***777**************************888888888889999999..666666666666655555566555 PP

>> DUF1688  Protein of unknown function (DUF1688)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.2e-05      0.03     152     222 ..     121     194 ..     103     219 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
     DUF1688 152 daegLkkltaeklakalqvseenplvGlegRaelLkr.L.gealeekpevfgee.grpgnlvdyllskakekas 222
                 + ++ +++ a++l ++l  + +npl Gl g a+lL++ L   al+e ++v+ e+  r  nlvd ll  ++  ++
  CTQ27873.1 121 QLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKaLpDPALTEYTKVIIEQaDRLRNLVDRLLGPQHPGMH 194
                 44555788999************************87353358888888775555**********954422222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2729.75
//
Query:       CTQ27874.1  [L=469]
Description: glutamine synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.4e-138  460.9   0.0   2.9e-138  460.6   0.0    1.0  1  Gln-synt_C  Glutamine synthetase, catalytic domain
    1.9e-32  110.9   0.1    3.6e-32  109.9   0.1    1.5  1  Gln-synt_N  Glutamine synthetase, beta-Grasp domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.6   0.0  3.2e-142  2.9e-138       2     345 .]     103     466 ..     102     466 .. 0.98

  Alignments for each domain:
  == domain 1  score: 460.6 bits;  conditional E-value: 3.2e-142
                 T-HHHHHHHHHHHHHHTTC..EEEEEEEEEEEEESEECCCE.SSEEEEEEE.T..............B...B.TSS-TTBHCCCCCTCCHHHHHHHHHH CS
  Gln-synt_C   2 rdPRsvlkralarlaeeGl..tvvvgpElEFflfdkeedke.asksllevdse..............ekgrpaekggyfsvapvdeaedlrreiveale 83 
                 rdPRs++kra+++l+++G+  tv++gpE+EFflfd+ ++++  s+s +++d+               +++rp  kggyf+v+pvd+ +d+r+ ++ ++e
  CTQ27874.1 103 RDPRSIAKRAEEYLRATGIadTVLFGPEPEFFLFDDIRFGAsISGSHVAIDDIegawnsstkyeggnKGHRPGVKGGYFPVPPVDSSQDIRSTMCMIME 201
                 8***************************************99999999999989*************9******************************* PP

                 HTT--EECCEEECCCT.EEEEEE--EECHHHHHHHHHHHHHHHHHHHHTT-EEE-SSSSSTTS---BEEEEEEEEECTTEESSB-TTSGGGB-HHHHHH CS
  Gln-synt_C  84 algieveashhEvatg.QvEinlkfadalkaaDnvvtfKrvvkevArkhgltatFmpKplegdnGsgmHvhlSlwdkdgknlfadeddeyalselarhf 181
                 ++g+ vea+hhEvat+ Q+E+ ++f+++ k+aD+++++K+vv++vA++ g+tatFmpKp++gdnGsgmH+h+Sl+ k+g+nlf++++   +lse a+ +
  CTQ27874.1 202 EMGLVVEAHHHEVATAgQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLA-KNGTNLFSGDK-YAGLSEQALFY 298
                 ***************99**********************************************************.**********9.456******** PP

                 HHHHHHHHHHHHHHHS-SCCHHHHCSSSTTSSSBEEEESS-TTCSEEEE-.TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHHTT--------S-S CS
  Gln-synt_C 182 igGllkhakaltaltaptvnSYkRlvpgyeaPvalawgarNRsallRipa.skekakrvElRlpdasaNPYLalAallaAgldGienklepgepvekdl 279
                 igG++khaka++al++pt+nSYkRlvpgyeaPv+la++arNRsa++Rip  +++ka+r+E+R+pd++aNPYL++Aall+AgldGi+nk++pge+++k+l
  CTQ27874.1 299 IGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVvTSPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEAMDKNL 397
                 **************************************************9************************************************ PP

                 SSS-TTTHTSS-B--SSHHHHHHHHHCS.HHHCC..SS-HHHHHHHHHHHHHCHHHHHCT--HHHHHHH CS
  Gln-synt_C 280 yelspeerkgieelPasleeAlealeed.ellke..vlgeevieaylalkraEleeleeevsdwelery 345
                 y+l+pee+k+i++++ sleeAl+al++d e+l++  v++++ i+ay+al+++E ++++++++++e+e y
  CTQ27874.1 398 YDLPPEEAKEIPQVAGSLEEALQALDADrEFLTAggVFTNDAIDAYIALRMEENDRVRMTPHPVEFELY 466
                 *********************************99*******************************987 PP

>> Gln-synt_N  Glutamine synthetase, beta-Grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9   0.1     4e-36   3.6e-32       1      83 []      14      95 ..      14      95 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.9 bits;  conditional E-value: 4e-36
                T--EEEEEEE-SSS-EEEEEEEHHHHHHHTTTT-EEEETTSSTTT------EEEEEEEGGGEEE-SS-SS-.EEEEEEEEE-T CS
  Gln-synt_N  1 evkfvdlqFtDikgklkhvtipadelsedaleegvsFDGSsiegfaeieeSDmlLkPdlstavidPfreekktarvicdvydp 83
                evkfvdl+FtD+kgk +hvtip+++++++++eeg +FDGSsi g+++i+eSDm+L+Pd+stavidPf ee+ t+++ cd+++p
  CTQ27874.1 14 EVKFVDLRFTDTKGKEQHVTIPSHQVNAEFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFYEEP-TLIIRCDILEP 95
                59*********************************************************************.********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3433.58
//
Query:       CTQ27875.1  [L=607]
Description: GTP-binding elongation factor family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-57  193.3   0.1    5.1e-57  192.6   0.1    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    4.7e-22   77.8   0.0    1.4e-21   76.3   0.0    1.8  2  EFG_C        Elongation factor G C-terminus
      2e-11   44.1   4.5      4e-11   43.2   3.8    2.0  2  GTP_EFTU_D2  Elongation factor Tu domain 2
    3.4e-07   30.3   0.4    1.7e-06   28.1   0.1    2.2  2  MMR_HSR1     50S ribosome-binding GTPase
    3.6e-05   23.8   0.5    0.00012   22.1   0.1    2.1  3  EFG_II       Elongation Factor G, domain II
    0.00083   18.7   0.1     0.0013   18.0   0.1    1.2  1  Septin       Septin
  ------ inclusion threshold ------
      0.016   14.7   0.0       0.21   11.1   0.0    2.9  2  FeoB_N       Ferrous iron transport protein B
       0.06   13.4   0.1       0.57   10.2   0.0    2.3  3  Dynamin_N    Dynamin family
       0.09   12.2   0.1       0.26   10.7   0.1    1.7  1  SRPRB        Signal recognition particle receptor beta subuni
       0.17   12.1   0.0        0.3   11.3   0.0    1.4  1  Roc          Ras of Complex, Roc, domain of DAPkinase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.6   0.1   2.8e-60   5.1e-57       2     193 ..       4     195 ..       3     196 .. 0.93

  Alignments for each domain:
  == domain 1  score: 192.6 bits;  conditional E-value: 2.8e-60
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEE CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlv 100
                 ++rni+ii+hvDhGKtTL+d+Ll+++g+ + ++e +e  rv+D+++ E+ergiTi ++++ ++  +++y+in++DtPGH+dF  ev+r ++++D ++lv
  CTQ27875.1   4 NLRNIAIIAHVDHGKTTLVDKLLQQSGTFDARTEAQE--RVMDSNDLEKERGITILAKNTAIK--WNDYRINIVDTPGHADFGGEVERVMSMVDSVLLV 98 
                 79*****************************887665..99**********************..********************************** PP

                 EETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTB..........THHHHHHHHH CS
    GTP_EFTU 101 vdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkge..........gvktllealv 189
                 vda +G++pqt+ v + a ++g+++iv+iNK+Dr++a+ +++v++v + +      ++  +++++ ++p+v++Sal+g            +++l +a+v
  CTQ27875.1  99 VDAFDGPMPQTRFVTKKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLF------VNLDATDEQLDFPIVYASALNGIagldhedmadDMTPLYQAIV 191
                 ***********************************************999......66666666679************88888888877778999988 PP

                 HHSH CS
    GTP_EFTU 190 ellp 193
                 + +p
  CTQ27875.1 192 DRVP 195
                 8776 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       7.5   1.4e+04      16      33 ..      37      56 ..      33      66 .. 0.67
   2 !   76.3   0.0     8e-25   1.4e-21       3      82 ..     397     476 ..     395     482 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 7.5
                CCCCCHH..HHHHHCT-EEE CS
       EFG_C 16 eyvgkvi..sdlssrrGeie 33
                e + +v+  +dl++ rG+ +
  CTQ27875.1 37 EAQERVMdsNDLEKERGITI 56
                55666663368999999765 PP

  == domain 2  score: 76.3 bits;  conditional E-value: 8e-25
                 EEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE-- CS
       EFG_C   3 lEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevp 82 
                  EP+++v+++v+e+++g v++ l +r+G +++m++d++grv++ + iP+++ligf++e+ ++T+G+g + ++fs+Y+ v+
  CTQ27875.1 397 QEPFENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVR 476
                 7****************************************************************************997 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       9.5   1.7e+04      43      65 ..     156     178 ..     153     179 .. 0.81
   2 !   43.2   3.8   2.2e-14     4e-11       1      74 []     219     289 ..     219     289 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9.5
                  EEESEEETTSEEEEEEEESSCCS CS
  GTP_EFTU_D2  43 ededeavaganaGvivaikgled 65 
                  e++d +++ a a +++a+ + ed
   CTQ27875.1 156 EQLDFPIVYASALNGIAGLDHED 178
                  56788899999999999988877 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 2.2e-14
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G++  gr+ +G++k++++v i   d+++k   +++++++t+ + e+++ + a aG+i+ai gl + + ++dt++
   CTQ27875.1 219 GVIGIGRIKRGKVKPNQQVTI--IDSEGKTRNGKVGKVLTHLGLERIESDVAEAGDIIAITGLGE-LNISDTIC 289
                  67889****************..999888899*********************************.9*****98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   9.7e-10   1.7e-06       2     114 .]       8     129 ..       7     129 .. 0.75
   2 ?   -0.7   0.0       0.8   1.4e+03      36      58 ..     226     247 ..     224     284 .. 0.62

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 9.7e-10
                 EEEEESTTSSHHHHHHHHHT................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvv 83 
                 +ai+ +   GK+tL+ +l++                +    +++ g T+  +   +k+++ +i++vDtpG         ++g +++++ + +d +llvv
  CTQ27875.1   8 IAIIAHVDHGKTTLVDKLLQqsgtfdarteaqervmDSNDLEKERGITILAKNTAIKWNDYRINIVDTPG-H------ADFGGEVERVMSmVDSVLLVV 99 
                 89999999***********76667777766654332245778888******9999***************.3......346666666666479****** PP

                 ETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  84 daseeklkpldeeleelleeakkplilvlnk 114
                 da  ++  p+ + + +    ++ + i+v+nk
  CTQ27875.1 100 DAF-DGPMPQTRFVTKKAFAHGLKPIVVINK 129
                 *99.556677677666655555566777776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.8
                 EEEEEEEETTEEEEEEECGGCSS CS
    MMR_HSR1  36 inegrvklkgkeielvDtpGlie 58 
                 i++g+vk + ++++++D  G   
  CTQ27875.1 226 IKRGKVKPN-QQVTIIDSEGKTR 247
                 566778754.6999999999322 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       8.6   1.5e+04      47      56 ..     275     284 ..     270     285 .. 0.82
   2 ?   -2.4   0.0         3   5.4e+03      23      43 ..     295     315 ..     294     318 .. 0.85
   3 !   22.1   0.1   6.7e-08   0.00012      20      66 ..     330     376 ..     325     384 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 8.6
      EFG_II  47 ilsGmGelHl 56 
                  ++G+Gel +
  CTQ27875.1 275 AITGLGELNI 284
                 589****975 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3
      EFG_II  23 kaLarlleEDptlrverdeeT 43 
                 +aL  l+ ++pt+++ ++ +T
  CTQ27875.1 295 EALPALSVDEPTVSMFFNVNT 315
                 6788899999***99999888 PP

  == domain 3  score: 22.1 bits;  conditional E-value: 6.7e-08
      EFG_II  20 klskaLarlleEDptlrverdeeTketilsGmGelHleivverlkre 66 
                 ++ + L++ l     lrve  e+   + +sG GelHl +++e+++re
  CTQ27875.1 330 QILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE 376
                 556678888888999******************************98 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   7.5e-07    0.0013       7      75 ..       8      81 ..       5     103 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.5e-07
                EEEEEBTTSSCCCCCCTTSSSS----.......--------------S-EEEEEEEEETTCEEEEEEEE---BSSS CS
      Septin  7 lmvvGesglGkttlintlfetdliee.......ekleeasekkkktveikkkkvvieedgvklnltviDtpgfGda 75
                + ++ +   Gkttl++ l++++ + +       + ++++  +k++ ++i +k++ i+ ++   +++++Dtpg+ d+
  CTQ27875.1  8 IAIIAHVDHGKTTLVDKLLQQSGTFDarteaqeRVMDSNDLEKERGITILAKNTAIKWND--YRINIVDTPGHADF 81
                667788899**********99877664555553333333336666677777777777764..56899*****8776 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.21      32     118 ..      53     133 ..       6     176 .. 0.73
   2 ?   -2.9   0.0       2.4   4.3e+03     105     149 ..     306     350 ..     296     353 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                 TSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGG..HHHHHHHHHHHHHTTSSEEEEEETHHHH CS
      FeoB_N  32 GvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatn..lernLyLtlqllelgvpvvlalnmidea 118
                 G+t+  k++++k+++++++ivD PG  ++    e e+v       + +d v+ vvda    + ++ ++t + +  g++ ++++n++d  
  CTQ27875.1  53 GITILAKNTAIKWNDYRINIVDTPGHADFGG--EVERVM------SMVDSVLLVVDAFDgpMPQTRFVTKKAFAHGLKPIVVINKVDRP 133
                 99***********************876653..223332......23566666777654336677788888999999999999998864 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.4
                 TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTH CS
      FeoB_N 105 gvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegi 149
                 +v++   +n++    k+g  +  +++ ++L+ + v+ +a + e++
  CTQ27875.1 306 TVSMFFNVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEET 350
                 566777788888888899999999999999999999888877766 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.16     3e+02       1      21 [.       8      28 ..       8      30 .. 0.90
   2 ?   10.2   0.0   0.00032      0.57      61     167 ..      28     129 ..      13     130 .. 0.71
   3 ?   -4.1   0.0       8.2   1.5e+04     101     114 ..     235     248 ..     232     255 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.16
                EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlge 21
                ia++ ++ +GK++++++Ll++
  CTQ27875.1  8 IAIIAHVDHGKTTLVDKLLQQ 28
                78899999**********986 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00032
                 EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEETTS-SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBT CS
   Dynamin_N  61 kledfsevreeieketekiagankgiskkvillkilsllvkgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanhdlsnsealflarevdpkgk 159
                 +   f++ +e++e+ ++ ++ ++++  +++ + +  ++++ ++++vD+PG  +   +    v++ +   d +l+v++a    +  + +f+ +++  +g 
  CTQ27875.1  28 QSGTFDARTEAQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE----VERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFAHGL 121
                 44555666666666666666566666677888889999************9985444....5788888888888888766444.577888888888888 PP

                 TEEEEEE- CS
   Dynamin_N 160 rtivvltk 167
                 + ivv++k
  CTQ27875.1 122 KPIVVINK 129
                 88888887 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 8.2
                 -SEEEEE---B-SS CS
   Dynamin_N 101 kgltlvDlPGldsv 114
                 +++t++D+ G +++
  CTQ27875.1 235 QQVTIIDSEGKTRN 248
                 78999999887765 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00015      0.26       4      84 ..       6     100 ..       3     103 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                 -EEEEE-STTSSHHHHHHHHHHS....................S---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEE CS
       SRPRB   4 pavllvGlsdsGKTslftrLttd....................svkktvtSqessaalkvksekgskltliDfPGheklrqklleklkaksslkglvfv 82 
                 +++ ++   d GKT+l  +L+++                    ++++  t +++++a k    ++ +++++D PGh  +  ++       s + +++ v
  CTQ27875.1   6 RNIAIIAHVDHGKTTLVDKLLQQsgtfdarteaqervmdsndlEKERGITILAKNTAIKW---NDYRINIVDTPGHADFGGEVERV---MSMVDSVLLV 98 
                 567788899************999998888866655555554444444444455555555...88999********9998876555...4445555555 PP

                 EE CS
       SRPRB  83 vD 84 
                 vD
  CTQ27875.1  99 VD 100
                 55 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017       0.3       6     119 ..      12     131 ..       7     132 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
                 SSTTSSHHHHHHCHCT..-CCC-EEET...TT.TEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHH CS
         Roc   6 GdsgvGKtsllkrfve..dkfsekeks...ti.gvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeW 98 
                      GKt+l++++++  ++f+ ++++    + + d+ +++  +i   ++  k +++++ni Dt G+ +f    +  ++  + ++lv+d+ +    ++ 
  CTQ27875.1  12 AHVDHGKTTLVDKLLQqsGTFDARTEAqerVMdSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTR 110
                 55678*********98444565443330003313333334444444444555677899*************9999999999999999998776666666 PP

                 HHHHHHHCSSS-EEEEEE-TT CS
         Roc  99 lkelkkvagkspvilvgnkiD 119
                 +   k+ a+  + i+v+nk+D
  CTQ27875.1 111 FVTKKAFAHGLKPIVVINKVD 131
                 666677777778888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4219.27
//
Query:       CTQ27876.1  [L=199]
Description: putative hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-10   40.6   0.0    4.1e-10   40.0   0.0    1.4  1  HAD_2           Haloacid dehalogenase-like hydrolase
    6.2e-08   33.2   0.0    2.2e-07   31.4   0.0    1.9  1  Hydrolase       haloacid dehalogenase-like hydrolase
    1.5e-06   28.1   0.0      4e-06   26.8   0.0    1.7  2  Hydrolase_like  HAD-hyrolase-like
    0.00015   22.2   0.4    0.00036   21.0   0.2    1.7  2  HAD             haloacid dehalogenase-like hydrolase
    0.00042   20.2   0.0     0.0044   16.9   0.0    2.1  1  Acid_PPase      Acid Phosphatase
  ------ inclusion threshold ------
      0.052   13.8   0.0      0.092   13.0   0.0    1.5  1  PerC            PerC transcriptional activator
        0.1   12.3   0.0       0.38   10.5   0.0    1.8  2  SHOCT           Short C-terminal domain
       0.12   12.3   0.0       0.18   11.7   0.0    1.3  1  TrmB            Sugar-specific transcriptional regulator TrmB
       0.12   12.1   0.0       0.34   10.6   0.0    1.9  1  PNK3P           Polynucleotide kinase 3 phosphatase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0     2e-13   4.1e-10      58     178 .]      62     184 ..       3     184 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 2e-13
       HAD_2  58 eee.kieellrkyneekkkkevkpydgvkelLeeLkeagyklgivTsksreaveek.leqlgiesyFdvivtsedvekkKPdpeviekaleklklkkee 154
                 ++e +++  ++++ +  +  +v + ++v+ ++++L+++g+++ + ++ +r  ++    e  ++    d i+ s++++ +KP++++++++le+ ++++++
  CTQ27876.1  62 CHEmNMPLSYEQFAHGWQAVFVALRPEVITIMHKLRAQGHRVVVLSNTNRLHTTFWpDEYPEVRAAADRIYLSQEMGLRKPEAQIYLRVLEEEGFSAAD 160
                 33344444446666666667899***********************998876665415667899*********************************** PP

       HAD_2 155 viyvGDsptDieaakkagikviav 178
                 ++++ D+   i +a ++gi++i v
  CTQ27876.1 161 TVFFDDNVDNIAGANRLGITSILV 184
                 ********************9976 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.1e-10   2.2e-07     116     209 ..      84     177 ..       1     178 [. 0.85

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.1e-10
                 THHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT..GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 116 plkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG..ddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaA 209
                    ++pe+   +++L+a+g +vv+l++ n+ +     +++   + + d ++ s + +  kp+ ++++++++e + + +++++++D+v  +a++ + 
  CTQ27876.1  84 A--LRPEVITIMHKLRAQGHRVVVLSNTNRLHTTFWPDEYPevRAAADRIYLSQEMGLRKPEAQIYLRVLEEEGFSAADTVFFDDNVDNIAGANRL 177
                 3..89*************************888866666444666668888899999*********************************999765 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.4   8.7e+03      41      48 ..      76      83 ..      75      84 .. 0.84
   2 !   26.8   0.0     2e-09     4e-06       2      51 ..     139     186 ..     138     196 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.4
                    CT-EEEEE CS
  Hydrolase_like 41 aGwksvLV 48
                    +Gw+ v+V
      CTQ27876.1 76 HGWQAVFV 83
                    89***999 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 2e-09
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSS CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltG 51 
                     l+KPe+ +y + le+ g   +++++  D+  + iagAn+ G++s+LV+ G
      CTQ27876.1 139 LRKPEAQIYLRVLEEEGFSAADTVFFDDN-VDNIAGANRLGITSILVT-G 186
                     58***************************.999**************5.4 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.2   1.8e-07   0.00036      43     114 ..      47     113 ..       4     134 .. 0.73
   2 ?   -0.9   0.0      0.93   1.9e+03      66     102 ..     117     156 ..     109     159 .. 0.62

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.8e-07
         HAD  43 frellrldraglaelleallagls.eelaaelerfvaevirpklldpgalellaahraaGdrvvvvSgglrpl 114
                 ++ +  +d++ +a++  ++  +ls e++a+  ++ +       +l+p++ +++++ ra+G+rvvv+S+++r  
  CTQ27876.1  47 HERGELSDEDFAAAMCHEMNMPLSyEQFAHGWQAVF------VALRPEVITIMHKLRAQGHRVVVLSNTNRLH 113
                 244445555556667777888888888888888888......3699**********************99875 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.93
         HAD  66 seelaaelerfvaevirpk...lldpgalellaahraaGd 102
                  ++   e++++ +++++ +   l +p+a  +l+   ++G+
  CTQ27876.1 117 WPDEYPEVRAAADRIYLSQemgLRKPEAQIYLRVLEEEGF 156
                 4444455555555555555555788899988887778876 PP

>> Acid_PPase  Acid Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.2e-06    0.0044     110     151 ..     144     185 ..      78     190 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.2e-06
                 HHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-S CS
  Acid_PPase 110 tkhfeklkkktgieyedmlfFDdesrnievesrlgvtfvlvp 151
                 ++ + ++ ++ g + +d +fFDd+ +ni   +rlg+t++lv+
  CTQ27876.1 144 AQIYLRVLEEEGFSAADTVFFDDNVDNIAGANRLGITSILVT 185
                 44556788999****************************995 PP

>> PerC  PerC transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.6e-05     0.092      39      86 ..      98     149 ..      61     153 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.6e-05
        PerC  39 valkRaeClrkasrpplp..alnlseikkavdrty..kelGlatvseevfRk 86 
                 +  +R   l +++r      ++++ e++ a+dr+y  +e+Gl  ++ +++ +
  CTQ27876.1  98 AQGHRVVVLSNTNRLHTTfwPDEYPEVRAAADRIYlsQEMGLRKPEAQIYLR 149
                 334566666666665444459************996679*********9965 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00019      0.38      10      23 ..      47      60 ..      43      61 .. 0.89
   2 ?   -2.6   0.0       2.7   5.3e+03       5      13 ..      92     100 ..      90     100 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00019
       SHOCT 10 yarGeIteEEFeak 23
                ++rGe+++E+F a+
  CTQ27876.1 47 HERGELSDEDFAAA 60
                89*********985 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.7
       SHOCT   5 kLkeLyarG 13 
                 +  +L+a+G
  CTQ27876.1  92 IMHKLRAQG 100
                 667899998 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.2e-05      0.18       1      27 [.     133     160 ..     133     169 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.2e-05
                 HH.HCHHHHHCCCHCHHHHHHCCCHHCH CS
        TrmB   1 Lq.klGLseyEakvYlaLlklgpatade 27 
                 L+ ++GL++ Ea++Yl +l+++  +a +
  CTQ27876.1 133 LSqEMGLRKPEAQIYLRVLEEEGFSAAD 160
                 56699**************777766654 PP

>> PNK3P  Polynucleotide kinase 3 phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00017      0.34      24      66 ..      79     121 ..      56     153 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
       PNK3P  24 addwkllsesvlekLkklkeegykivifsNqggvvekktkksl 66 
                 ++ +  l+++v++ ++kl  +g  +v++sN + ++++   +++
  CTQ27876.1  79 QAVFVALRPEVITIMHKLRAQGHRVVVLSNTNRLHTTFWPDEY 121
                 4557778999**********************99997333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1516.43
//
Query:       CTQ27877.1  [L=286]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-57  192.9  26.2      9e-57  192.6  26.2    1.0  1  Virul_fac_BrkB  Virulence factor BrkB
  ------ inclusion threshold ------
        4.3    7.6   7.4        3.7    7.8   0.1    2.8  3  SpoIIIAC        Stage III sporulation protein AC/AD protein f


Domain annotation for each model (and alignments):
>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.6  26.2     1e-60     9e-57       2     256 ..      29     274 ..      28     276 .. 0.91

  Alignments for each domain:
  == domain 1  score: 192.6 bits;  conditional E-value: 1e-60
  Virul_fac_BrkB   2 eddlsllAaalayytllSlfPlllvllavlgllglddelqeqlldllaev.lpegaaevvedilqrllnqa.slgllglavllwsasggvsalrr 94 
                     ed++++lA+ lay +llSl+Pl++v++a++++++ ++e++ q+  ++  + +p+ + +v+++++++++ ++ + +++g  +l+++++ ++ ++++
      CTQ27877.1  29 EDHMTTLAGNLAYVSLLSLVPLIAVVFALFAAFPMFSEVSVQIRHFIFANfIPA-TGDVIQGYIEQFVANSsRMTAVGAFGLIVTSLLLMYSIDS 122
                     799***************************9977799*********88775886.99*******76665555*********************** PP

  Virul_fac_BrkB  95 alnkiygveesrsflrkrllsllllllllvllllslvlsvflqslllasapllglglelsellllqllrwlvallllvlafallYrvlpnvkvrl 189
                     aln i++ ++sr+ + ++++++++l+l+++l ++sl++s++l sl  as        +l  + + +llr+ ++l+l ++af llY ++p ++vr 
      CTQ27877.1 123 ALNTIWRSTRSRPKVYSFAVYWMILTLGPLLAGASLAISSYLLSLRWAS--------DLDGV-IDNLLRL-FPLILSWAAFWLLYSIVPTTQVRN 207
                     ********999*******************************9933322........23334.5677777.6778******************** PP

  Virul_fac_BrkB 190 raalpGallaallwllvkilfslylsnfasynaiYGslgaliilllWlylsalilLlGaelnaelqe 256
                     r+a++Gal+aall++++k +f+ly++ f sy+ iYG +++++il++W+y+++ i+LlGae++++l e
      CTQ27877.1 208 RDAVIGALVAALLFEAGKKAFALYITTFPSYQLIYGVISVVPILFVWVYWTWCIVLLGAEITVTLGE 274
                     ***************************************************************9876 PP

>> SpoIIIAC  Stage III sporulation protein AC/AD protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.4    0.0086        78      28      54 ..      46      72 ..      41      74 .. 0.85
   2 ?   -3.1   0.2       1.1   9.5e+03      34      51 ..     108     125 ..     104     127 .. 0.50
   3 ?    7.8   0.1   0.00042       3.7       8      32 ..     210     234 ..     210     237 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0086
    SpoIIIAC 28 slielagkiiilllalpllsalfetvr 54
                sl+ l+++++ l+ a p++s++   +r
  CTQ27877.1 46 SLVPLIAVVFALFAAFPMFSEVSVQIR 72
                577799**************9976665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.1
    SpoIIIAC  34 gkiiilllalpllsalfe 51 
                 g i+  ll++  ++++++
  CTQ27877.1 108 GLIVTSLLLMYSIDSALN 125
                 444444555555555555 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00042
    SpoIIIAC   8 giiaalladilkdageeeiAsliel 32 
                 ++i+al a +l +ag++++A++i+ 
  CTQ27877.1 210 AVIGALVAALLFEAGKKAFALYITT 234
                 689********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2303.32
//
Query:       CTQ27878.1  [L=145]
Description: D-tyr-tRNA(Tyr) deacylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-55  185.7   0.0    7.7e-55  185.4   0.0    1.0  1  Tyr_Deacylase  D-Tyr-tRNA(Tyr) deacylase


Domain annotation for each model (and alignments):
>> Tyr_Deacylase  D-Tyr-tRNA(Tyr) deacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.4   0.0   4.3e-59   7.7e-55       2     143 ..       3     143 ..       3     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 185.4 bits;  conditional E-value: 4.3e-59
                    EEEEEEEEEEEEETTEEEEEESSEEEEEEE-BTT--HHHHHHHHHHHHH-EEEEETTSSEEEETTTTT-EEEEEE-GGGGSBTSSSSS-BGTTB-- CS
  Tyr_Deacylase   2 aviqrvksAsvtvegevvgsigkGllvlvgvekedteedleklakkilnlrifedeegkmnlsvkdvggevLvVsqftLyadtrkGrrpsfhkaak 97 
                    a+iqrv++Asvtv++ev+g+ig+Gllvl+gvek+d+e+++++l++++l +rif+d+egkmnl+v+++gg+vLvVsqftL+adt++G rpsf+k a+
     CTQ27878.1   3 ALIQRVSRASVTVADEVTGEIGPGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGAA 98 
                    68***********99********************************************************************************* PP

                    HHHHHHHHHHHHHHHHHCTCTTEEE--TTS-EEEEEEEEEEEEEEE CS
  Tyr_Deacylase  98 peeaeelyekfveklrerlgekvetGeFgadmkvslvndGPvtill 143
                    p++ae+lye+fv+++r++ +++ +tG+F adm+vslvndGPvt++l
     CTQ27878.1  99 PDRAEALYEYFVARCRQQ-EMHTQTGRFAADMQVSLVNDGPVTFWL 143
                    ****************98.77***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1201.77
//
Query:       CTQ27879.1  [L=313]
Description: putative acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-47  159.8   0.0    5.1e-47  159.3   0.0    1.2  1  YiiD_C           Putative thioesterase (yiiD_Cterm)
    9.4e-14   51.7   0.0    1.4e-13   51.0   0.0    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    6.5e-13   48.7   0.0    1.1e-12   48.0   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.3e-07   31.9   0.0    2.5e-07   31.0   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00046   20.9   0.0    0.00078   20.1   0.0    1.4  1  Acetyltransf_5   Acetyltransferase (GNAT) domain
     0.0018   18.2   0.0      0.004   17.1   0.0    1.6  1  FR47             FR47-like protein
     0.0032   17.6   0.0      0.006   16.7   0.0    1.4  1  DUF4442          Domain of unknown function (DUF4442)
     0.0079   16.3   0.0      0.014   15.5   0.0    1.3  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.099   13.3   0.0       0.17   12.5   0.0    1.3  1  ATE_C            Arginine-tRNA-protein transferase, C terminu


Domain annotation for each model (and alignments):
>> YiiD_C  Putative thioesterase (yiiD_Cterm)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.3   0.0   2.6e-50   5.1e-47       1     143 [.     158     297 ..     158     298 .. 0.99

  Alignments for each domain:
  == domain 1  score: 159.3 bits;  conditional E-value: 2.6e-50
      YiiD_C   1 lqelqetlhqeIPlseamgikvesydgkelelsaplapNiNlkgtmFaGSiytlatltgWglvwLqlkeaglkgdiVladakikYlkPvtedptaqvsl 99 
                 +++lq+ + q+IPlse+mg+++++y+g+++++++p a N N ++t+FaGS+++latltgWgl+wL l+e++l g+i+lada+i+Y +P++++p a+++l
  CTQ27879.1 158 CAQLQQAWYQHIPLSEKMGVRIQQYTGQKFITTMPEAGNQNPHHTLFAGSLFSLATLTGWGLIWLMLRERHLGGTIILADAHIRYSQPISGRPSAIADL 256
                 789************************************************************************************************ PP

      YiiD_C 100 peeealeedleslarkkkarikleveilsgeelaaeftGeyvvl 143
                     +l++dl++lar++kar++++ve++ +++  a f+G y+vl
  CTQ27879.1 257 G---SLSGDLDRLARGRKARVQMQVELFGDDKQGAVFEGIYIVL 297
                 *...*************************************997 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   7.3e-17   1.4e-13      14     117 .]      28     122 ..       9     122 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 7.3e-17
                     HHHHHHHHHHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHH CS
  Acetyltransf_1  14 ppnedaseeefeesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaa 108
                      + ++ se++    +   a +  v+ e+g+l++  +l+++ +   ++a i+++aV+p+ + kGlG+++  +le  ar+eg+k++ +   +  + a
      CTQ27879.1  28 LHQPKGSERD--A-WDAMAHHQMVVDEEGNLVAVGRLYINAE---NEASIRFMAVHPSVQDKGLGTLMAMTLESVARQEGVKRVTC---SAREDA 113
                     3333333333..3.33466688899*****************...9*************************************999...778889 PP

                     HHHHHHTTE CS
  Acetyltransf_1 109 irlYeklGF 117
                     ++++ klGF
      CTQ27879.1 114 VEFFAKLGF 122
                     ********9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   5.7e-16   1.1e-12      27     114 ..      40     130 ..      16     143 .. 0.86

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 5.7e-16
  Acetyltransf_10  27 eegealllvaeeggkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavgeeqe 114
                      ++ +++ +v++e+g++v v++l  + +    i  ++V+p+ + +G+g+ + +++e+ a+++g k ++t+ a   av+f+ klGF++ ge ++
       CTQ27879.1  40 DAMAHHQMVVDEEGNLVAVGRLyINAEneaSIRFMAVHPSVQDKGLGTLMAMTLESVARQEGVK-RVTCSAREDAVEFFAKLGFVNQGEITT 130
                      455788899999*****9987755555678****************************999999.*********************998765 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.2e-10   2.5e-07       7      75 ..      48     123 ..      42     124 .. 0.68

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.2e-10
                     EEEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHH.HHH..TT..SEEEEEEEEETHH.HHHHHHHHTTEE CS
  Acetyltransf_7   7 VaeddgkivGfialslld...aeitrlaVdpeyrgkGiGraL.lea..ae..kgiileqlelnae.kaikfYeklGFe 75 
                     V++++g+ v   +l++++   a+i ++aV+p+ + kG+G+ + +++  ++  +g++   ++ +a+  a++f++klGF+
      CTQ27879.1  48 VVDEEGNLVAVGRLYINAeneASIRFMAVHPSVQDKGLGTLMaMTLesVArqEGVKR--VTCSAReDAVEFFAKLGFV 123
                     56667777766666666666888888**************99544434114467542..233332379*********8 PP

>> Acetyltransf_5  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.9e-07   0.00078       3      59 ..      16      72 ..      15      96 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.9e-07
  Acetyltransf_5  3 yevFreemgaegeaaapeldiDefDavcdhllvideaeevVGtyRllrpdeaerleg 59
                    y  Fr em  ++ ++ ++ ++D++Da ++h +v+de+ ++V++ Rl  ++e+e+  +
      CTQ27879.1 16 YYQFRWEMLRKPLHQPKGSERDAWDAMAHHQMVVDEEGNLVAVGRLYINAENEASIR 72
                    556999999999998888****************99999******999888874434 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     2e-06     0.004      21      79 ..      68     124 ..      50     129 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2e-06
                 TSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  21 ggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfek 79 
                   ++  + v+p+++ +Glg++++  l    +++   v  v+  + + + +++ klGf  
  CTQ27879.1  68 EASIRFMAVHPSVQDKGLGTLMAMTLESVARQE--GVKRVTCSAREDAVEFFAKLGFVN 124
                 4678899**************987776544444..4555556666789*********65 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     3e-06     0.006      12     120 ..     168     285 ..     159     296 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3e-06
                 HSGGGGGG--EEEEEETTEEEEEE---GGGB-TTSSB-HHHHHHHHHHHHHHHHHHHS-T...TEEEEEEEEEEEE-S---S-EEEEEE-TT.....S- CS
     DUF4442  12 kaPYfgtvgprieelepgraevrlkkrrrvrNhigtvHAiAicnlaElamGllaeatlpd...thrwipkgmevdYlakatgdltavaelep.....ed 102
                  +P    +g+ri++ + ++   ++++ ++++N  +t++A+++++la l+   l+   l++   +  +i   ++++Y ++  g+ +a+a+l +     + 
  CTQ27879.1 168 HIPLSEKMGVRIQQYTGQKFITTMPE-AGNQNPHHTLFAGSLFSLATLTGWGLIWLMLRErhlGGTIILADAHIRYSQPISGRPSAIADLGSlsgdlD- 264
                 56666677778888877777777775.699*****************99866666777763455679************************9876651. PP

                 T...T--EEEEEEEEEEETTE CS
     DUF4442 103 v...gekeelvvevevrdekg 120
                 +   g+k  ++++ve+  +++
  CTQ27879.1 265 RlarGRKARVQMQVELFGDDK 285
                 245566777777777654433 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.2e-06     0.014      53     139 ..      48     127 ..      37     139 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.2e-06
  Acetyltransf_4  53 lvaesdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFelvgi 139
                      v+e++++v+  +l  +++  ++++++ ++ + +   +++glg  +   le v+++ ++++ +    s++e +++f+++lGF + g+
      CTQ27879.1  48 VVDEEGNLVAVGRLY-INA--ENEASIRFMAV-HPSVQDKGLGTLMAMTLESVARQEGVKRVT---CSAREDAVEFFAKLGFVNQGE 127
                     477899***999999.888..88888888888.689*******999999***********975...4569************98876 PP

>> ATE_C  Arginine-tRNA-protein transferase, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.3e-05      0.17      24     107 ..      17     103 ..       1     108 [. 0.67

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.3e-05
       ATE_C  24 esfarflvdsplseeeisakekklgsyhqeyrldg..kLvavgvvDvlp.eglSsvYffydpdyaklslGklsiLreielarelglk 107
                  +f+  ++ +pl++ + s+++      h ++ +d+  +Lvavg + +   +  S  ++  +p++++  lG+l++++  ++ar++g+k
  CTQ27879.1  17 YQFRWEMLRKPLHQPKGSERDAWDAMAHHQMVVDEegNLVAVGRLYINAeNEASIRFMAVHPSVQDKGLGTLMAMTLESVARQEGVK 103
                 3455556666666666555555444444444444336******99886516677778889***************999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2551.55
//
Query:       CTQ27880.1  [L=305]
Description: putative lipase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-66  224.2   0.3    2.2e-66  223.8   0.3    1.2  1  Abhydrolase_3    alpha/beta hydrolase fold
    2.2e-06   26.8   0.1    8.4e-06   24.9   0.1    1.7  1  COesterase       Carboxylesterase family
    2.5e-05   23.3   0.0    3.9e-05   22.7   0.0    1.3  1  Say1_Mug180      Steryl acetyl hydrolase
     0.0048   15.6   0.0      0.061   12.0   0.0    2.0  2  AXE1             Acetyl xylan esterase (AXE1)
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.018   14.5   0.0    1.3  1  Peptidase_S9     Prolyl oligopeptidase family
      0.015   15.4   0.3      0.027   14.6   0.3    1.4  1  Thioesterase     Thioesterase domain
      0.018   14.0   0.0      0.031   13.2   0.0    1.3  1  Chlorophyllase2  Chlorophyllase enzyme
       0.02   14.9   0.0      0.038   14.0   0.0    1.4  1  Sel_put          Selenoprotein, putative
      0.074   12.6   0.0        1.8    8.0   0.0    2.2  2  DLH              Dienelactone hydrolase family
       0.12   12.1   0.5       0.24   11.0   0.2    1.6  2  Esterase         Putative esterase
       0.14   12.0   0.0       0.22   11.4   0.0    1.3  1  Lipase_3         Lipase (class 3)


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.8   0.3   1.3e-69   2.2e-66       1     210 [.      75     280 ..      75     281 .. 0.97

  Alignments for each domain:
  == domain 1  score: 223.8 bits;  conditional E-value: 1.3e-69
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardeg 96 
                    l+y+HGG+fv+g+++thd+ +r+la  +g++v++v+YrlAPeh fPaa++da + +  ++ +a++lg+d+sri+laGdSaGG+la+++alr++++g
     CTQ27880.1  75 LIYYHGGCFVSGGFTTHDNQLRQLAMFSGCRVIAVQYRLAPEHTFPAAHDDAEQGVMIIHRHAEQLGVDASRITLAGDSAGGHLALVTALRLKAAG 170
                    69********************************************************************************************** PP

                    ---EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSSGGGGGSTTTSGGGCS-SST---EEEEEETT-TTHHHHHHHHHHHHH CS
  Abhydrolase_3  97 epkvagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylpeadrddplaspllaedlsglpptlvvvaefDplrdegeayaerlra 192
                     +++a+++liyP++d+ + + +s+   +++ +++++tr++l    ++yl+   +++p aspl++ed+ glpp+ +++aefDplrdege +++rl +
     CTQ27880.1 171 AWQPAQLILIYPMLDA-TASMASY---ASNGEDYIITRDTLLSGYEMYLAATPATHPDASPLWREDFHGLPPVHILTAEFDPLRDEGEVLYRRLTE 262
                    **************99.6666777...788999*************************************************************** PP

                    TT--EEEEEETTEETTGG CS
  Abhydrolase_3 193 agvevelieyegmvHgfa 210
                    +gve+++++y g++Hgf+
     CTQ27880.1 263 QGVESSCQRYLGVIHGFF 280
                    *****************8 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   5.1e-09   8.4e-06      95     204 ..      65     164 ..      56     175 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 5.1e-09
                 ESSSSSTTSSEEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----HH.HHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEE CS
  COesterase  95 PkekkeakkklPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlGv.lGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdpervtlf 190
                 P   ++a+  lP l++ hGg f++g  ++   + ++La   ++ v++++YRl +   F +             D  + +  ++++ ++ G d +r+tl+
  CTQ27880.1  65 P---PTADGLLPTLIYYHGGCFVSGGFTThdNQLRQLAMFSGCRVIAVQYRLAPeHTFPAA----------HDDAEQGVMIIHRHAEQLGVDASRITLA 150
                 4...5677889**************9988345667999999***********983345554..........458889999******************* PP

                 EETHHHHHHHHHHH CS
  COesterase 191 GesAGaasvsllll 204
                 G+sAG+ ++ +  l
  CTQ27880.1 151 GDSAGGHLALVTAL 164
                 ******88765554 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.4e-08   3.9e-05     119     240 ..      66     189 ..      48     220 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.4e-08
  Say1_Mug180 119 PkvD...pvllylHGGgfalklipvtlvfLsnlrklfpdmailvsDYtvtaakdqskkYplqvleslavydylvkskgf..knvvvlGdSaGGnlvLs 211
                  P+ D   p l+y+HGG f+ +   +    L +l  +f+   ++ + Y +   ++          + + + +   + +g+    +++ GdSaGG l L+
   CTQ27880.1  66 PTADgllPTLIYYHGGCFVSGGFTTHDNQLRQLA-MFSGCRVIAVQYRLAPEHTFPAAHDDA-EQGVMIIHRHAEQLGVdaSRITLAGDSAGGHLALV 161
                  5555555899*********999888888888875.799999******998844433333333.44555555555566652268*************** PP

  Say1_Mug180 212 lllklsklnkvvlPkkaiaiSPWlnltil 240
                    l+l+  +    P + i+i P l++t  
   CTQ27880.1 162 TALRLKAAGA-WQPAQLILIYPMLDATAS 189
                  *****99665.99************9943 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.057        93      69      93 ..      58      82 ..      44     112 .. 0.76
   2 !   12.0   0.0   3.7e-05     0.061     157     192 ..     125     163 ..     114     186 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.057
                EEEEEEEES.SSSSEEEEEEEE-TT CS
        AXE1 69 ikaklvlPkekeeklPavvefhGYe 93
                ++ ++v P ++++ lP+++ +hG  
  CTQ27880.1 58 MHFRVVSPPTADGLLPTLIYYHGGC 82
                4567899999************943 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHHTSTT...EEEEEEEEEEETHHHHHHHHHH CS
        AXE1 157 Davrlveivaslpe...vDeeRvavlGasqGGalalava 192
                 Da + v i++ + e   vD +R++ +G+s GG lal++a
  CTQ27880.1 125 DAEQGVMIIHRHAEqlgVDASRITLAGDSAGGHLALVTA 163
                 777777777766544559******************875 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.1e-05     0.018      56     188 ..     137     279 ..     123     297 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-05
                   HHTTS--GGGEEEEEETHHHHHHHHHHH..H-GGG-SEE..EEESE---CCCHHCSTTSTHHHCCCC--TTT....CHHHHHHHHHH-CGGG--... CS
  Peptidase_S9  56 akegyvdserlaitGgSyGGyltgaaln..qrpdlFkaa..vaevpvvdvlrydsdtdllteeymewgnpee....neegykelspyspldnvk... 141
                   a++  vd++r+ + G S+GG l+++++   ++   ++ a  +  +p++d ++++ +   ++ + +++   ++      e+y ++ p+++ d+     
    CTQ27880.1 137 AEQLGVDASRITLAGDSAGGHLALVTALrlKAAGAWQPAqlILIYPMLDATASMAS---YASNGEDYIITRDtllsGYEMYLAATPATHPDASPlwr 230
                   566689****************9998875678888875433889999999999999...88877777777666444555555555555555544998 PP

                   ....---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SST CS
  Peptidase_S9 142 ....aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgv 188
                         pp+ +++++ D      e++ l+++L+++g+++  + + +  Hg+
    CTQ27880.1 231 edfhGLPPVHILTAEFDPLR--DEGEVLYRRLTEQGVESSCQRYLGVIHGF 279
                   88888899999999999866..89999999999999999999999988865 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.3   1.7e-05     0.027      27     100 ..     103     180 ..      83     198 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-05
                   EEEEEEECSTTST..SHHHCTTCHHH...HHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHC.T-SEEEEEEE CS
  Thioesterase  27 vvevlavqlpgre..rdepplesiee...laaeyaealrqiqpegPyalfGhSlGgllAfevArqLesq.Glavkslfli 100
                    ++v+avq++ +   +  ++++++e+   ++ ++ae+l     +   +l+G S+Gg lA  +A +L++  + +++ l+li
    CTQ27880.1 103 GCRVIAVQYRLAPehTFPAAHDDAEQgvmIIHRHAEQLGVDASR--ITLAGDSAGGHLALVTALRLKAAgAWQPAQLILI 180
                   57788888887754333333444444443566666666666666..99*********************66799999987 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.9e-05     0.031       8     129 ..      63     185 ..      58     198 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
  Chlorophyllase2   8 vvaPteageYpvllflhGyllln...slYsqlLkhiash.gfivvapqlykvaeada.keiksaakvlnWlakgLesvlpeevepdlsklalsg 96 
                      v  Pt  g  p l++ hG +  +   +   + L+++a + g  v+a+q     e+   +  + a++ +      + ++ +e++  d s+++l+g
       CTQ27880.1  63 VSPPTADGLLPTLIYYHGGCFVSggfTTHDNQLRQLAMFsGCRVIAVQYRLAPEHTFpAAHDDAEQGVM-----IIHRHAEQLGVDASRITLAG 151
                      6678999999*9999999885551223455788888887578899999666544433233333333332.....34455689999********* PP

  Chlorophyllase2  97 HSrGgktafalalgkaktsl.kfsaligvdPvag 129
                       S+Gg+ a+  al  +++   + + li + P+  
       CTQ27880.1 152 DSAGGHLALVTALRLKAAGAwQPAQLILIYPMLD 185
                      ********99999988765547777888888754 PP

>> Sel_put  Selenoprotein, putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.4e-05     0.038      21      45 ..     210     234 ..     208     235 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-05
     Sel_put  21 dYerYvehmrrhHpdkppmsereFf 45 
                  Ye Y++   ++Hpd+ p+ +++F+
  CTQ27880.1 210 GYEMYLAATPATHPDASPLWREDFH 234
                 5**********************96 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.058        95      88     127 ..     136     171 ..     116     207 .. 0.75
   2 ?    8.0   0.0    0.0011       1.8     144     195 ..     236     285 ..     206     301 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.058
         DLH  88 ylksvpevstkkvgvvGfCmGGalalllaaevpevdaava 127
                 ++++ + v+ +++ + G   GG lal+ a +    +aa a
  CTQ27880.1 136 HAEQLG-VDASRITLAGDSAGGHLALVTALRL---KAAGA 171
                 344444.9999****************99887...44444 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0011
         DLH 144 kapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsre 195
                   p+ +l +e D+  + +  e l   l++++v+   + Y g+ H+F++    
  CTQ27880.1 236 LPPVHILTAEFDPLRDEG--EVLYRRLTEQGVESSCQRYLGVIHGFFQLGGV 285
                 5699999******99998..6899**********************987655 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.5   4.1e+03       8      38 ..      58      85 ..      56      95 .. 0.77
   2 ?   11.0   0.2   0.00014      0.24     111     135 ..     141     165 ..     134     169 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.5
                EEEEEEE.CC.GGTTTEEEEEEE--TTHHCC CS
    Esterase  8 ikvqvyLPedyspgrkypvvylldGltgwdq 38
                ++++v  P+   + + +p++++ +G  ++  
  CTQ27880.1 58 MHFRVVSPPT--ADGLLPTLIYYHG-GCFVS 85
                7778887777..7788899999999.88865 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00014
                 SEECCCEEEEEETHHHHHHHHHHHC CS
    Esterase 111 rtapdgravaGqSmGGlgALilalk 135
                  +++++ ++aG+S GG+ AL++al+
  CTQ27880.1 141 GVDASRITLAGDSAGGHLALVTALR 165
                 56666689***************97 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014      0.22      56      91 ..     134     171 ..      87     183 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
                 HHHHHHTT..-EEEEEEEETHHHHHHHHHHHHHHHTT- CS
    Lipase_3  56 krllekyp..eysivvtGHSLGgalAlLaaldlvenge 91 
                 +r  e+      +i+++G S Gg lAl++al l++ g 
  CTQ27880.1 134 HRHAEQLGvdASRITLAGDSAGGHLALVTALRLKAAGA 171
                 5555555554589********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2172.38
//
Query:       CTQ27881.1  [L=82]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-06   26.1   0.5    7.9e-06   25.7   0.5    1.2  1  RHH_3         Ribbon-helix-helix domain
    2.2e-05   24.2   1.7    3.4e-05   23.6   1.7    1.4  1  RHH_1         Ribbon-helix-helix protein, copG family
  ------ inclusion threshold ------
       0.11   13.3   0.6       0.64   10.8   0.6    1.9  1  VAPB_antitox  Putative antitoxin


Domain annotation for each model (and alignments):
>> RHH_3  Ribbon-helix-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.5   1.3e-09   7.9e-06      11      42 ..      18      49 ..      11      50 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.3e-09
       RHH_3 11 pelaekLkaLSekTrIprSklldeAiellLek 42
                ++  ++L++L  +  Ipr++ll+eA+e +Lek
  CTQ27881.1 18 DDVIQRLDDLKVQRNIPRAELLREAVEQYLEK 49
                677899*************************8 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   1.7   5.7e-09   3.4e-05       6      39 .]      16      49 ..      11      49 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 5.7e-09
                EEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH CS
       RHH_1  6 ldeellerLdelarrrgrSrSelIReAlreyler 39
                l+++++ rLd l+  r+  r el+ReA+++yle+
  CTQ27881.1 16 LSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEK 49
                89******************************96 PP

>> VAPB_antitox  Putative antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6   0.00011      0.64       6      62 ..      17      77 ..      14      82 .] 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
  VAPB_antitox  6 sdevYekLkklKre.....geSFsdvIerLlekkkkgkkkellelfgilseeeadeiekask 62
                  sd+v ++L++lK        e   +++e++lek+  + k+ +  + g +++ e d +e + +
    CTQ27881.1 17 SDDVIQRLDDLKVQrniprAELLREAVEQYLEKQD-RAKDTISSALGLWQDCEEDGMEYQRQ 77
                  67777777766642111113556789999997555.6799*********8888788776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       994  (0.0554409); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 634.17
//
Query:       CTQ27882.1  [L=127]
Description: putative 2-component transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-19   69.2   0.0    4.6e-19   69.1   0.0    1.0  1  PIN             PIN domain
     0.0034   17.3   0.2     0.0066   16.4   0.1    1.6  2  DUF4411         Domain of unknown function (DUF4411)
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.022   14.5   0.0    1.3  1  DUF5615         Domain of unknown function (DUF5615)
      0.037   13.5   0.0      0.039   13.5   0.0    1.1  1  Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofa
      0.069   13.7   0.0        3.5    8.1   0.0    2.1  2  PIN_12          PIN domain


Domain annotation for each model (and alignments):
>> PIN  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   1.3e-22   4.6e-19       2     116 ..       7     112 ..       6     118 .. 0.93

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 1.3e-22
                 EE-HHHHHHHHTTSHHHHHHHHHHHTSSEEEEEHHHHHHHHHHHHSSCHCHHHHHHHHHHHHHHHTSEEEEBCHHHHHHHHHHHHHHHSBHHHHHHHHH CS
         PIN   2 vlDTsvliallrgeekaeaarklleeleelvtsalvlaEllyvlarrkskrekaaelvelllllsalkilpidaeiaeeaaeialkygllpnDaliaAt 100
                 ++DT++li+l++g+ +a++a++++      ++s +++ E++ ++++         ++ +++  ls ++i++i+ +iae+  +++ +y+l++ Da+i+At
  CTQ27882.1   7 LFDTNILIDLFSGRREAKQALEAWP--PQNAISLITWMEVMVGAKK-------YHQEQRTRMALSTFNIINISQDIAERSVALRQEYKLKLPDAIILAT 96 
                 78***************99999997..9******************.......8899999999************************************ PP

                 HHHHT-EEE.ESSTH.H CS
         PIN 101 AkehgikliatfDed.f 116
                 A+ h+++li t++++ f
  CTQ27882.1  97 AQLHRLELI-TRNTKdF 112
                 *********.9998645 PP

>> DUF4411  Domain of unknown function (DUF4411)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.49   1.8e+03       2      11 ..       7      16 ..       7      31 .. 0.75
   2 !   16.4   0.1   1.8e-06    0.0066      54     143 ..      38     121 ..      21     126 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.49
     DUF4411  2 llDtnvfiea 11
                l+Dtn++i  
  CTQ27882.1  7 LFDTNILIDL 16
                68****9954 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.8e-06
     DUF4411  54 lskWakenesieklesaedlavveevgkvakwvivesekyskaakkefl.svaDpfliAaAlaknatvVTkEvkkpnkkknkvkIPdvcea 143
                 l +W++ +   +k+ +++ +++  +  +++++ +++ +++s a  +e++ +  D+ ++A+A+ ++  ++T ++k  +     + IP v + 
  CTQ27882.1  38 LITWMEVMVGAKKYHQEQRTRMALSTFNIINI-SQDIAERSVALRQEYKlKLPDAIILATAQLHRLELITRNTK--D----FAGIPGVVTP 121
                 6689999999999999999*************.688888888889***99**********************99..2....3446666555 PP

>> DUF5615  Domain of unknown function (DUF5615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   6.2e-06     0.022      23      60 ..      76     114 ..      61     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.2e-06
     DUF5615  23 dvlhvrelglegasDeeileyAkeedriivTkD.kDFge 60 
                  ++++r++ + + +D  il+ A+ + + ++T++ kDF  
  CTQ27882.1  76 RSVALRQEYKLKLPDAIILATAQLHRLELITRNtKDFAG 114
                 5677777777889************************76 PP

>> Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofactor binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.1e-05     0.039     113     173 ..      44     108 ..       9     123 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
  Porphobil_deam 113 avvgTsSlRRkaqlkklrpdlevkdlRGnvdtRlrkldeg....eydaiiLAaAGLkRlgleeri 173
                      +vg     ++ + + + +++++ ++   + +R   l+++      daiiLA+A L+Rl+l +r 
      CTQ27882.1  44 VMVGAKKYHQEQRTRMALSTFNIINISQDIAERSVALRQEyklkLPDAIILATAQLHRLELITRN 108
                     56777777777777888888999999999999999997665553379************976554 PP

>> PIN_12  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00096       3.5       3      46 ..       8      45 ..       7      75 .. 0.65
   2 ?    4.0   0.0     0.018        64     123     171 .]      73     112 ..      49     112 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00096
      PIN_12  3 iDTnifldeffrlseeealkklleliesgkiklivpdivldEfl 46
                +DTni++d +f  + e a +     +e++  + +++ i+++E++
  CTQ27882.1  8 FDTNILID-LFSGRRE-AKQ----ALEAWPPQNAISLITWMEVM 45
                8******9.5555555.344....44556556666666677765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.018
      PIN_12 123 ilerafkkkpPfskkkkkgfgDaliwesileyakknkekvifvsrD.kDf 171
                 i+er+ + +    ++ k   +Da+i+ +   +         +++r+ kDf
  CTQ27882.1  73 IAERSVALR----QEYKLKLPDAIILATAQLHRL------ELITRNtKDF 112
                 444444444....556999999999988754443......3777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 955.79
//
Query:       CTQ27883.1  [L=309]
Description: formate dehydrogenase formation protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.8e-117  389.9   0.5   1.1e-116  389.7   0.5    1.0  1  FdhE             Protein involved in formate dehydrogenase fo
  ------ inclusion threshold ------
      0.012   15.7   7.7       0.62   10.1   3.8    2.8  2  DZR              Double zinc ribbon
       0.07   13.2   4.6        1.2    9.2   1.4    2.8  2  Elf1             Transcription elongation factor Elf1 like
       0.08   12.4   5.5       0.68    9.4   0.1    3.3  3  zf-ribbon_3      zinc-ribbon domain
       0.11   13.1   3.7       0.19   12.3   3.7    1.5  1  Stc1             Stc1 domain
       0.18   11.8   5.5       0.45   10.5   0.2    2.4  2  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
       0.63   10.5   6.5         15    6.0   6.5    2.8  1  Lar_restr_allev  Restriction alleviation protein Lar
          1    9.5   5.2        1.1    9.4   1.9    2.5  2  zinc_ribbon_6    Zinc-ribbon
        1.9    9.3   5.7        4.5    8.1   5.7    1.7  2  zinc_ribbon_15   zinc-ribbon family
        6.8    6.8   9.4         31    4.7   5.8    2.8  2  HypA             Hydrogenase/urease nickel incorporation, met
        7.7    7.0   8.4         70    3.9   5.1    2.9  2  zf-IS66          zinc-finger binding domain of transposase IS


Domain annotation for each model (and alignments):
>> FdhE  Protein involved in formate dehydrogenase formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  389.7   0.5  6.9e-120  1.1e-116       3     286 .]      22     304 ..      20     304 .. 0.98

  Alignments for each domain:
  == domain 1  score: 389.7 bits;  conditional E-value: 6.9e-120
                 XX--EE---TTHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHHHHHCS---...--HHHHHHHHHTT--TT-HHHHHHH-TTHHHHHHHHHT--S-SS CS
        FdhE   3 ipplllpelkelfsrraeRLrqLaeehpladYLrflaalaeaqqkvlaaekpla.ldaeaieraqehgmpplaakalerdeawqelLqallealkeelp 100
                 ippll+p+lk+l++rraeRLr+La+++pl+dYLrf+a +a+aq+ vl  ++pl+   +++i++a+e+g ppl+ + l rd++w++lL++l+++lk+e++
  CTQ27883.1  22 IPPLLFPRLKNLYNRRAERLRELAANNPLGDYLRFAALIAHAQEVVL-YDHPLQmDLTARIKAASEQGKPPLDIHVLPRDKHWHKLLHSLIAELKPEMS 119
                 89*********************************************.666666366778999************************************ PP

                 HHHHHHHHHHHH--HHHHHHHHHHHHTT-GGGS-GGGHHHHHHHHHHHHHHHHHT--TTSSS-.-TT-SS-TTT---EEEEEEE-------EEEEEETT CS
        FdhE 101 ealrealerlrkadaeelealadallageleavdaakavfvaaAlqvvwtklaaaldakalaelaeekglCPvCgsaPvasvvriggeaeglRylhCsl 199
                  ++ +++e+l+ka+++ele++a+al+ +++++v+++ka+f++aAl+++w+++a+ ++ ka+ae++e++++CPvCgs+Pv+s+v+ig+ ++glRylhC+l
  CTQ27883.1 120 GPALAVIENLEKASEQELEQMASALFVSDFASVSSDKAPFIWAALSLYWAQMASLIPGKARAEYGEQRQFCPVCGSMPVSSIVQIGT-TQGLRYLHCNL 217
                 **************************************************************************************9.*********** PP

                 T--EEE--TTS-TTT---SS-EEE------C-EEEEEETTTTEEEEEEETTT-TT--HHHHHHTTHHHHHHHHHTT-EE----TTS. CS
        FdhE 200 CeteWhvvRvkCsnCeetkelaylsledekaavkAesCdeChsYlkilyqekdpevepvADDlAsLaLDllleeegfaraglnplll 286
                 CeteWhvvRvkCsnCe++++l+y+sl++e+aavkAesC++C +Ylki+yqekdp+ve+vADDlAsL+LD+ +e+egfar+++np+++
  CTQ27883.1 218 CETEWHVVRVKCSNCEQSRDLHYWSLDNEQAAVKAESCGDCGTYLKIMYQEKDPKVEAVADDLASLVLDARMEQEGFARSSINPFMF 304
                 *************************************************************************************97 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.8   0.00038      0.62      10      48 ..     185     232 ..     180     240 .. 0.67
   2 ?    6.4   2.7    0.0056       9.1       1      24 [.     229     264 ..     229     275 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00038
         DZR  10 pdarfCseCgtklkavaa...........edrCpsCgekvdpearfCpeC 48 
                 ++ +fC+ Cg+ +   ++             +C  C+++ +     C +C
  CTQ27883.1 185 EQRQFCPVCGSMPV--SSivqigttqglrYLHCNLCETEWHVVRVKCSNC 232
                 5789*******954..22345899999*9555555555555555555555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0056
         DZR   1 CpqCgee............lppdarfCseCgtklka 24 
                 C++C++                +a+ C++Cgt lk 
  CTQ27883.1 229 CSNCEQSrdlhywsldneqAAVKAESCGDCGTYLKI 264
                 9999999999999988777777889*******9985 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.4   0.00076       1.2      23      56 ..     189     223 ..     176     246 .. 0.73
   2 ?    3.6   1.2     0.043        69      23      56 ..     228     263 ..     225     276 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00076
        Elf1  23 dCpfCnhek.svevkldkkekiaevsCkvCgesfe 56 
                  Cp+C++   s  v++ ++++  +++C+ C+++ +
  CTQ27883.1 189 FCPVCGSMPvSSIVQIGTTQGLRYLHCNLCETEWH 223
                 49***977314568999999999999999988655 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.043
        Elf1  23 dCpfCnheksvev.kldkkekiaev.sCkvCgesfe 56 
                 +C +C++++ ++  +ld+++   ++ sC+ Cg++++
  CTQ27883.1 228 KCSNCEQSRDLHYwSLDNEQAAVKAeSCGDCGTYLK 263
                 455555555554313333333222225666666555 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00042      0.68       3      14 ..     188     200 ..     186     203 .. 0.87
   2 ?    1.9   0.2       0.1   1.6e+02       3       8 ..     227     232 ..     226     237 .. 0.76
   3 ?    2.0   0.1     0.094   1.5e+02      16      24 ..     252     260 ..     245     262 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00042
  zf-ribbon_3   3 vrCPnCGa.plss 14 
                  ++CP CG+ p+ss
   CTQ27883.1 188 QFCPVCGSmPVSS 200
                  68******99986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.1
  zf-ribbon_3   3 vrCPnC 8  
                  v+C+nC
   CTQ27883.1 227 VKCSNC 232
                  578888 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.094
  zf-ribbon_3  16 dnvCpyCGt 24 
                  +  C  CGt
   CTQ27883.1 252 AESCGDCGT 260
                  678*****7 PP

>> Stc1  Stc1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.7   0.00012      0.19      37      83 ..     210     258 ..     177     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
                 ..----TTTS--.---EEE-SSS--EEESTTS-HHHHHS.SS--.-HHH CS
        Stc1  37 kskikCkectak.qateleCsaCqktkpldeFsksqrrkpdaar.CkdC 83 
                  + + C+ c ++ +++ ++Cs C+++++l  +s  + + + +a  C dC
  CTQ27883.1 210 LRYLHCNLCETEwHVVRVKCSNCEQSRDLHYWSLDNEQAAVKAEsCGDC 258
                 45789****99868899****************8777776666559999 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00028      0.45      18      45 ..     187     220 ..     180     221 .. 0.73
   2 ?    2.6   2.3     0.084   1.4e+02      16      44 ..     223     259 ..     217     261 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00028
  Zn_Tnp_IS1595  18 gfvCPhCgsr...kayrikt......rglfqCkeCrk 45 
                    ++ CP Cgs+   +   i +       ++++C+ C +
     CTQ27883.1 187 RQFCPVCGSMpvsS---IVQigttqgLRYLHCNLCET 220
                    455*******6553...4444447789999**99975 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.084
  Zn_Tnp_IS1595  16 pngfv.CPhCgsr...kayrikt....rglfqCkeCr 44 
                       +v C +C+ +   +++++ +     +   C +C+
     CTQ27883.1 223 HVVRVkCSNCEQSrdlHYWSLDNeqaaVKAESCGDCG 259
                    555455****999888888888777777777777776 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.5    0.0095        15       5      36 ..     189     234 ..     185     282 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0095
  Lar_restr_allev   5 pCPfCggravlersqrvvaeigq..............cvyCadCga 36 
                       CP Cg+ +v    q ++ ++                 v C +C+ 
       CTQ27883.1 189 FCPVCGSMPVSSIVQIGTTQGLRylhcnlcetewhvvRVKCSNCEQ 234
                      5*********999999998777756666666666666666666666 PP

>> zinc_ribbon_6  Zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.9   0.00065       1.1      32      54 ..     215     233 ..     207     235 .. 0.83
   2 ?   -0.1   0.1      0.58   9.5e+02      31      38 ..     254     261 ..     244     267 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00065
  zinc_ribbon_6  32 CnDCekksevkfhvlglkCkeCg 54 
                    Cn C    e+++hv+ +kC++C+
     CTQ27883.1 215 CNLC----ETEWHVVRVKCSNCE 233
                    5555....589***********6 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.58
  zinc_ribbon_6  31 lCnDCekk 38 
                    +C DC++ 
     CTQ27883.1 254 SCGDCGTY 261
                    46677654 PP

>> zinc_ribbon_15  zinc-ribbon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.22   3.6e+02      77      86 .]     185     194 ..     180     194 .. 0.82
   2 ?    8.1   5.7    0.0028       4.5       2      76 ..     189     263 ..     188     267 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.22
  zinc_ribbon_15  77 eefkyCpkCg 86 
                     e+ ++Cp Cg
      CTQ27883.1 185 EQRQFCPVCG 194
                     6789*****9 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0028
  zinc_ribbon_15   2 lCpkCgklskaelvk..kkkvlklffipvfkwkkkkpylacskCkslleaskelgkeiekkessekkeCknCgkeve 76 
                      Cp Cg++  +++v+  +++ l+ + +++++++ +   ++cs+C++    +    +  ++++++++++C +Cg+ ++
      CTQ27883.1 189 FCPVCGSMPVSSIVQigTTQGLRYLHCNLCETEWHVVRVKCSNCEQSRDLHY--WSLDNEQAAVKAESCGDCGTYLK 263
                     6*****9866655551167777777788888888889999****99988887..555556677889******99765 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.12     2e+02      83      98 ..     186     199 ..     136     207 .. 0.81
   2 ?    4.7   5.8     0.019        31      64      94 ..     220     260 ..     206     277 .. 0.57

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.12
                 HHHHHS-TTTSSS-EE CS
        HypA  83 eekalrCpkCgsadve 98 
                 +  +  Cp Cgs  v+
  CTQ27883.1 186 Q--RQFCPVCGSMPVS 199
                 2..2359999998765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.019
                 EEEE--EEEETTTS-EEECHHHHH..........S-TTTSS CS
        HypA  64 ieevpvkvrCreCgkefeleekal..........rCpkCgs 94 
                  e   v+v+C++C+++ +l+  +l          +C++Cg+
  CTQ27883.1 220 TEWHVVRVKCSNCEQSRDLHYWSLdneqaavkaeSCGDCGT 260
                 34444556666666555544421233345555556666665 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   5.1     0.043        70       3      46 .]     189     233 ..     188     233 .. 0.83
   2 ?    3.0   0.1     0.083   1.4e+02       3      12 ..     254     263 ..     252     273 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.043
     zf-IS66   3 tCpcCGg.llkpigedrvreeldipPakfrViehirpkyaCpcCe 46 
                  Cp CG+ +++ i +  +++ l +    +  +e++  +++C++Ce
  CTQ27883.1 189 FCPVCGSmPVSSIVQIGTTQGLRYLHCNLCETEWHVVRVKCSNCE 233
                 6******7755554444669************************7 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.083
     zf-IS66   3 tCpcCGgllk 12 
                 +C +CG+ lk
  CTQ27883.1 254 SCGDCGTYLK 263
                 8*****9544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2330.03
//
Query:       CTQ27884.1  [L=211]
Description: formate dehydrogenase-O, cytochrome b556 subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-22   80.6  19.3    1.3e-22   80.2  19.3    1.2  1  Ni_hydr_CYTB  Prokaryotic cytochrome b561
    3.2e-05   24.4  30.4     0.0021   18.6  13.5    2.5  2  DUF4405       Domain of unknown function (DUF4405)
  ------ inclusion threshold ------
      0.087   12.5   0.0       0.15   11.7   0.0    1.3  1  PapJ          Pilus-assembly fibrillin subunit, chaperone
       0.25   11.0  20.2      0.012   15.3   8.8    2.1  2  PepSY_TM      PepSY-associated TM region
        5.7    7.5  10.0         28    5.3   0.8    3.3  3  DUF4179       Domain of unknown function (DUF4179)


Domain annotation for each model (and alignments):
>> Ni_hydr_CYTB  Prokaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2  19.3   3.7e-26   1.3e-22       1     182 []       9     184 ..       9     184 .. 0.89

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 3.7e-26
                   -----TTHHHHHHHHHHHHHHHHHHHHHS------S-GGG-...HHHHHHHHHHHHHHHH.HHHHHHH------------STTTSSSSS-------- CS
  Ni_hydr_CYTB   1 ryslvarllHWlnallvvllllsgllianlhprlywgdsgk...aralHklaGlvllall.lfrllwlkkakkpspriifrqikrdltlllrgrkpe 93 
                   ry+++ r+ HW++a+++vl+++sgl ++++  ++ ++ +g+   ar lH ++G+v++a + ++++ ++ ++  ++++i + +++r+++    ++  +
    CTQ27884.1   9 RYTAPERINHWVTAFCFVLAAVSGLGFFFPSFNWLMHILGTpqlARILHPFVGVVMFASFiIMFFRYWHHNLINRDDIFWAKNIRKIV--VNEEVGD 103
                   799************************************999999999************8888888866666666666666666665..7789999 PP

                   --------TTTHHHHHHHHHHHHHHHHHHHT...HHHHHHHH...HTS-THHHHHHH.HHHHHHHHHHHHHHHHHHHHHH---XXXXXXXXX CS
  Ni_hydr_CYTB  94 agknnplqklvhlllyvllvvliltGlllsf...aatagfplllddkggaqlarelHellaaallafvvlHiaaallhgpvkkdtlrrMitg 182
                    g++n +qk v+++ +++lv+l ++G++++    a  + f     +    ++a  lH ++a+al++++++Hi+aal+ +     t+ +M+ g
    CTQ27884.1 104 TGRYNFGQKCVFWAAIIFLVLLLVSGVIIWRpyfA--PAF-----SIPVIRFALMLHSFAAVALIVVIMVHIYAALWVKG----TITAMVEG 184
                   9****************************997541..333.....779*****************************997....89999876 PP

>> DUF4405  Domain of unknown function (DUF4405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   8.9   9.1e-05      0.32       4      60 ..      19      70 ..      16      80 .. 0.87
   2 !   18.6  13.5   5.8e-07    0.0021       2      64 ..     114     170 ..     113     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.1e-05
     DUF4405  4 lllllsflvlaiSGillsfavlpsgrgaywaflgl..skhqwrdiHeilgllflilvvl 60
                ++++++f+++a+SG+  +f  ++   +    ++++  + + +r +H ++g+++++  ++
  CTQ27884.1 19 WVTAFCFVLAAVSGLGFFFPSFN---W----LMHIlgTPQLARILHPFVGVVMFASFII 70
                7899**************76555...2....6777889999*************99876 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 5.8e-07
     DUF4405   2 idlllllsflvlaiSGillsfavlpsgrgaywaflgl.skhqwrdiHeilgllflilvvlHlgl 64 
                 + +++++  ++l++SG+++++ ++ +        +++   +++ ++H ++++++++++++H++ 
  CTQ27884.1 114 VFWAAIIFLVLLLVSGVIIWRPYFAPA-------FSIpVIRFALMLHSFAAVALIVVIMVHIYA 170
                 6789999*************9988754.......45555677********************97 PP

>> PapJ  Pilus-assembly fibrillin subunit, chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.3e-05      0.15      13      56 ..      63     108 ..      57     115 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.3e-05
        PapJ  13 lllsssissvlq..aeelvvrddvfvadesrhqwvnernGriGsLn 56 
                 ++ +s+i  + +   ++l+ rdd+f a + r   vne+ G +G  n
  CTQ27884.1  63 VMFASFIIMFFRywHHNLINRDDIFWAKNIRKIVVNEEVGDTGRYN 108
                 55556666665522467889***********************877 PP

>> PepSY_TM  PepSY-associated TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   4.1     0.061   2.2e+02     130     185 ..      20      71 ..      15      73 .. 0.77
   2 ?   15.3   8.8   3.3e-06     0.012     122     218 ..     108     201 ..      72     211 .] 0.76

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.061
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM 130 laallllvllvsGlilwwprrkkkrfftfrpkkgrrfwldlHnvlGvwllpfllll 185
                 ++a+++++++vsGl   +p ++         +   ++ + lH  +Gv++++ ++++
  CTQ27884.1  20 VTAFCFVLAAVSGLGFFFPSFNWL---MHILGT-PQLARILHPFVGVVMFASFIIM 71 
                 57999**************99853...222222.4678999999999998877666 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.3e-06
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxx RF
    PepSY_TM 122 pvGrllvglaallllv.llvsGlilwwprrkkkrfftfrpkkgrrfwldlHnvlGvwllpfllllalTGlvwslaavlgaavkalvseg...aaaaaaa 216
                  +G+  v +aa+++lv llvsG+i+w p +      +f+     rf l lH+ + v l +++++  +  l+    ++++a v+ +v+++   ++++++ 
  CTQ27884.1 108 NFGQKCVFWAAIIFLVlLLVSGVIIWRPYFAP----AFSIPV-IRFALMLHSFAAVALIVVIMVHIYAALWVK--GTITAMVEGWVTKTwakKHHPRWY 199
                 567788888998877615789*****998865....455555.78**************99999999999995..666777777776655433444444 PP

                 xx RF
    PepSY_TM 217 aa 218
                 ++
  CTQ27884.1 200 RE 201
                 43 PP

>> DUF4179  Domain of unknown function (DUF4179)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.014        51       5      31 ..      15      41 ..      13      67 .. 0.78
   2 ?    5.3   0.8    0.0077        28       9      38 ..     116     146 ..     108     154 .. 0.79
   3 ?    3.0   0.3      0.04   1.4e+02      10      31 ..     155     173 ..     147     211 .] 0.49

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.014
                XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF4179  5 rikkvaaaaaalvllllssrllspalA 31
                ri  ++ a + +++++++ ++ +p++ 
  CTQ27884.1 15 RINHWVTAFCFVLAAVSGLGFFFPSFN 41
                677778888888888799999999886 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0077
                 XXXXXXXXXXXXXXXXXXXXXXXXXX..--S CS
     DUF4179   9 vaaaaaalvllllssrllspalAsaln.pvi 38 
                 +aa++ +++ll++++++  p +A a++ pvi
  CTQ27884.1 116 WAAIIFLVLLLVSGVIIWRPYFAPAFSiPVI 146
                 67777777777899*********99877777 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.04
                 XXXXXXXXXXXXXXXXXXXXXX CS
     DUF4179  10 aaaaaalvllllssrllspalA 31 
                  aa+a++v++   ++ +  al 
  CTQ27884.1 155 FAAVALIVVI---MVHIYAALW 173
                 4555555555...444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1376  (0.0767472); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1587.51
//
Query:       CTQ27885.1  [L=300]
Description: formate dehydrogenase-O, Fe-S subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-25   88.0   7.8    3.6e-25   88.0   7.8    1.6  2  Fer4_11         4Fe-4S dicluster domain
    1.4e-21   76.0   0.2    2.9e-21   75.0   0.2    1.5  1  Form-deh_trans  Formate dehydrogenase N, transmembrane
    3.3e-15   56.4  22.0    5.8e-08   33.2   5.3    3.2  3  Fer4_7          4Fe-4S dicluster domain
    2.3e-12   46.9  22.8    6.8e-06   26.2   9.2    2.7  2  Fer4_9          4Fe-4S dicluster domain
    1.8e-11   43.9  25.8    1.2e-06   28.5  10.5    3.5  3  Fer4_10         4Fe-4S dicluster domain
    2.8e-08   33.5  33.9     0.0004   20.3   2.8    4.9  5  Fer4_6          4Fe-4S binding domain
    2.8e-07   30.5  27.0    5.4e-06   26.4   7.5    3.7  3  Fer4_21         4Fe-4S dicluster domain
    5.9e-07   29.0  36.4    8.1e-05   22.3   2.7    5.4  6  Fer4            4Fe-4S binding domain
    3.5e-06   26.8  29.4      0.014   15.4   2.8    4.4  4  Fer4_2          4Fe-4S binding domain
     0.0001   23.2  25.5       0.31   12.0   0.0    5.0  6  Fer4_16         4Fe-4S double cluster binding domain
    0.00031   21.5  39.2       0.37   11.8   3.4    4.4  4  Fer4_3          4Fe-4S binding domain
    0.00031   21.2  24.1       0.49   11.0   4.3    4.1  5  Fer4_17         4Fe-4S dicluster domain
    0.00036   20.8  33.5      0.048   14.2   3.5    4.5  4  Fer4_4          4Fe-4S binding domain
     0.0017   19.2  11.6        0.1   13.4   0.7    3.8  4  Fer4_22         4Fe-4S dicluster domain
     0.0023   18.3  27.3      0.045   14.2   7.5    3.9  2  Fer4_8          4Fe-4S dicluster domain
     0.0098   16.6  13.2       0.15   12.8   0.3    3.7  2  Fer4_15         4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.024   14.4   0.4      0.024   14.4   0.4    4.0  4  Fer4_20         Dihydroprymidine dehydrogenase domain II, 4Fe
      0.034   14.7   0.6      0.034   14.7   0.6    4.1  3  Fer4_13         4Fe-4S single cluster domain of Ferredoxin I
      0.059   13.6  23.0       0.11   12.7   3.8    4.0  4  Fer4_18         4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer4_11  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       5.7   5.4e+03      47      50 ..      42      45 ..      26      66 .. 0.61
   2 !   88.0   7.8   3.8e-28   3.6e-25       2      99 ..      92     188 ..      91     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.7
     Fer4_11 47 vrev 50
                ++++
  CTQ27885.1 42 CKAC 45
                2222 PP

  == domain 2  score: 88.0 bits;  conditional E-value: 3.8e-28
     Fer4_11   2 ewlflpeqCrhCleppCvasapse.aivkdeetGaVlldektkkeevrevveacPykivrkneetgkvekCdmcldrveaGllpacvescptgalnfgd 99 
                 ewl+  + C+hC +p C++++pse ai++   +G+V ++++++  ++  ++ +cP++++r n e ++v kC++c+drv+ G++pacv++cptga++fg+
  CTQ27885.1  92 EWLIRKDGCMHCADPGCLKACPSEgAIIQYA-NGIVDFQSEQCI-GCGYCIAGCPFDVPRLNPEDNRVYKCTLCVDRVTVGQEPACVKTCPTGAIHFGS 188
                 68999999***************96666665.***********7.****************************************************96 PP

>> Form-deh_trans  Formate dehydrogenase N, transmembrane
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.2     3e-24   2.9e-21       1      43 [.     246     288 ..     246     289 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 3e-24
                     --HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH--B-S-SST CS
  Form-deh_trans   1 ISplVelWKGvlKplgalgmaatalagffHYitvGPneveeee 43 
                     IS +V++WKG++Kpl+a+g+aat++a++fHY++vGPn++eeee
      CTQ27885.1 246 ISQTVKFWKGIWKPLAAVGFAATFAASIFHYVGVGPNRAEEEE 288
                     9****************************************98 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   5.3   6.2e-11   5.8e-08       1      50 [.      38     114 ..      38     116 .. 0.93
   2 !   25.5  10.2   1.6e-08   1.5e-05       1      52 []     132     183 ..     132     183 .. 0.75
   3 !   10.1   2.1     0.001      0.97       2      24 ..     160     191 ..     159     210 .. 0.67

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 6.2e-11
      Fer4_7   1 rCigCgaCvaaC..........................pvkaieldeeenekgtekveidpekClgCga..CvavCPt 50 
                 +CigC+aC++aC                          ++ ++++ e+e++++  ++ i+ + C++C    C ++CP+
  CTQ27885.1  38 TCIGCKACQVACsewndirdevghnvgvydnpadltakSWTVMRFSEVEQNDK-LEWLIRKDGCMHCADpgCLKACPS 114
                 6*******************************999998899999999977766.88************99*******8 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 1.6e-08
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenekgtekveidpekClgC.........gaCvavCPtga 52 
                 +CigCg+C a Cp ++ +l++e+n            kC+ C          aCv++CPtga
  CTQ27885.1 132 QCIGCGYCIAGCPFDVPRLNPEDNRV---------YKCTLCvdrvtvgqePACVKTCPTGA 183
                 6********************95543.........34555544444433368*******98 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.001
      Fer4_7   2 CigC......g...aCvaaCpvkaieldeeen 24 
                 C+ C      g   aCv++Cp++ai +  +e+
  CTQ27885.1 160 CTLCvdrvtvGqepACVKTCPTGAIHFGSKED 191
                 66664444441444899999999998877655 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   5.6   8.6e-09   8.1e-06       2      49 ..      39     116 ..      38     118 .. 0.82
   2 !   26.2   9.2   7.2e-09   6.8e-06       1      51 []     132     184 ..     132     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 8.6e-09
      Fer4_9   2 CtgCgaCveaCpagvvvedaaerkarlraase...........................eaCigCga..CveaCpk.g 49 
                 C+gC+aC+ aC  +  ++d+++  + +    +                           + C++C +  C++aCp+ g
  CTQ27885.1  39 CIGCKACQVACSEWNDIRDEVGHNVGVYDNPAdltakswtvmrfseveqndklewlirkDGCMHCADpgCLKACPSeG 116
                 ***********887777777777776655554777778888888888888899******99**************955 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 7.2e-09
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraaseeaCigCga.........CveaCpkgai 51 
                 +C+gCg+C++ Cp++v +     + +        +C+ C +         Cv+ Cp+gai
  CTQ27885.1 132 QCIGCGYCIAGCPFDVPRLNPEDNRVY-------KCTLCVDrvtvgqepaCVKTCPTGAI 184
                 6**************998888777776.......5**********************997 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.4     5e-06    0.0048       3      21 ..      33      50 ..      31      80 .. 0.76
   2 !   28.5  10.5   1.3e-09   1.2e-06       2      56 .]      93     144 ..      92     144 .. 0.91
   3 !   20.6  11.0   3.7e-07   0.00035       4      56 .]     128     180 ..     125     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5e-06
     Fer4_10  3 vidddtCirCgkCvkaCPa 21
                 id  tCi+C++C+ aC +
  CTQ27885.1 33 LIDVTTCIGCKACQVAC-S 50
                6899*************.4 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 1.3e-09
     Fer4_10   2 vvidddtCirCg..kCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 + i +d C++C+   C kaCP+     ++  ++  ++ v+  +e+C+gcg+C++ CP
  CTQ27885.1  93 WLIRKDGCMHCAdpGCLKACPS-----EGAIIQYANGIVDFQSEQCIGCGYCIAGCP 144
                 678899******999*******.....777888888889999**************9 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 3.7e-07
     Fer4_10   4 idddtCirCgkCvkaCPadltsvgakgeaseeeavrkkvekCtgc......g...aCveaCP 56 
                 +++++Ci+Cg C + CP+            + ++++  v+kCt c      g   aCv+ CP
  CTQ27885.1 128 FQSEQCIGCGYCIAGCPF---------DVPRLNPEDNRVYKCTLCvdrvtvGqepACVKTCP 180
                 67899*************.........5555566666778899997777762567******9 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   2.1   4.6e-05     0.043       4      21 ..      34      51 ..      33      54 .. 0.90
   2 !    8.4   3.0    0.0025       2.4       9      24 .]     100     118 ..      95     118 .. 0.84
   3 !   20.3   2.8   4.3e-07    0.0004       1      23 [.     125     147 ..     125     148 .. 0.90
   4 ?   -1.6   0.2       3.6   3.4e+03      12      16 ..     160     164 ..     159     169 .. 0.67
   5 !   10.1   0.3   0.00074       0.7      14      24 .]     174     184 ..     170     184 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.6e-05
      Fer4_6  4 idpdkCigCgdCvrvCPe 21
                id   CigC +C ++C e
  CTQ27885.1 34 IDVTTCIGCKACQVACSE 51
                68889***********86 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0025
      Fer4_6   9 CigCgd..CvrvCP.egai 24 
                 C +C d  C ++CP egai
  CTQ27885.1 100 CMHCADpgCLKACPsEGAI 118
                 88997789******77997 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 4.3e-07
      Fer4_6   1 vveidpdkCigCgdCvrvCPega 23 
                 +v ++ + CigCg C++ CP+++
  CTQ27885.1 125 IVDFQSEQCIGCGYCIAGCPFDV 147
                 57899***************976 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 3.6
      Fer4_6  12 CgdCv 16 
                 C  Cv
  CTQ27885.1 160 CTLCV 164
                 55555 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00074
      Fer4_6  14 dCvrvCPegai 24 
                 +Cv+ CP+gai
  CTQ27885.1 174 ACVKTCPTGAI 184
                 5*********8 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   2.0   4.3e-05      0.04       3      20 ..      34      51 ..      32      62 .. 0.90
   2 !   26.4   7.5   5.7e-09   5.4e-06       3      53 ..      95     145 ..      94     148 .. 0.91
   3 ?    0.2   2.3      0.88   8.3e+02      46      58 ..     174     185 ..     153     186 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.3e-05
     Fer4_21  3 idedkCigCgkCliaCed 20
                id  +CigC+ C +aC++
  CTQ27885.1 34 IDVTTCIGCKACQVACSE 51
                8999************86 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 5.7e-09
     Fer4_21   3 idedkCigCgk..CliaCedtshqaieidaktvlkvvedeCvGCnlCssvCPv 53 
                 i +d C++C    Cl+aC+  s  ai   a+ ++  ++++C+GC  C++ CP 
  CTQ27885.1  95 IRKDGCMHCADpgCLKACP--SEGAIIQYANGIVDFQSEQCIGCGYCIAGCPF 145
                 8899*****9666******..7899999999*********************6 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.88
     Fer4_21  46 lCssvCPvedcie 58 
                  C++ CP+ ++i+
  CTQ27885.1 174 ACVKTCPT-GAIH 185
                 48888885.7775 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   3.7   3.8e-05     0.036       3      18 ..      34      49 ..      32      50 .. 0.94
   2 ?   -0.9   0.3       1.8   1.7e+03      10      15 ..      99     104 ..      95     105 .. 0.63
   3 ?    1.4   0.2      0.34   3.2e+02      14      20 ..     108     114 ..     107     115 .. 0.88
   4 !   22.3   2.7   8.6e-08   8.1e-05       5      22 ..     130     147 ..     126     149 .. 0.87
   5 ?   -1.1   0.2       2.1     2e+03       7      11 ..     159     163 ..     158     165 .. 0.59
   6 !   12.7   0.4   9.2e-05     0.087      13      23 ..     174     184 ..     174     185 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.8e-05
                EETTTSSS-THHHHHS CS
        Fer4  3 ideekCigCGaCvevC 18
                id   CigC+aC  +C
  CTQ27885.1 34 IDVTTCIGCKACQVAC 49
                89999*********** PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.8
                 S-THHH CS
        Fer4  10 gCGaCv 15 
                 gC+ C+
  CTQ27885.1  99 GCMHCA 104
                 566665 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.34
                 HHHHSTT CS
        Fer4  14 CvevCPv 20 
                 C ++CP 
  CTQ27885.1 108 CLKACPS 114
                 99****6 PP

  == domain 4  score: 22.3 bits;  conditional E-value: 8.6e-08
                 TTTSSS-THHHHHSTTTE CS
        Fer4   5 eekCigCGaCvevCPvgA 22 
                  e CigCG+C+  CP+++
  CTQ27885.1 130 SEQCIGCGYCIAGCPFDV 147
                 689*************97 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 2.1
                 TSSS- CS
        Fer4   7 kCigC 11 
                 kC+ C
  CTQ27885.1 159 KCTLC 163
                 55555 PP

  == domain 6  score: 12.7 bits;  conditional E-value: 9.2e-05
                 HHHHHSTTTEE CS
        Fer4  13 aCvevCPvgAI 23 
                 aCv+ CP+gAI
  CTQ27885.1 174 ACVKTCPTGAI 184
                 7*********9 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   2.8   1.5e-05     0.014       5      20 ..      34      49 ..      31      51 .. 0.89
   2 !    7.7   1.5    0.0043       4.1       8      21 ..      98     113 ..      93     114 .. 0.83
   3 !   15.0   1.1   2.1e-05     0.019       7      21 ..     130     144 ..     125     145 .. 0.87
   4 ?    5.2   2.1     0.028        26       9      22 .]     159     181 ..     147     181 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-05
      Fer4_2  5 vdtdrCigCgaCvsaC 20
                +d  +CigC+aC+ aC
  CTQ27885.1 34 IDVTTCIGCKACQVAC 49
                78899*********** PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0043
      Fer4_2   8 drCigC...gaCvsaCP 21 
                 d C++C   g C++aCP
  CTQ27885.1  98 DGCMHCadpG-CLKACP 113
                 67****7666.****** PP

  == domain 3  score: 15.0 bits;  conditional E-value: 2.1e-05
      Fer4_2   7 tdrCigCgaCvsaCP 21 
                 ++ CigCg C+  CP
  CTQ27885.1 130 SEQCIGCGYCIAGCP 144
                 577*******999** PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.028
      Fer4_2   9 rCigC......g...aCvsaCPa 22 
                 +C+ C      g   aCv+ CP+
  CTQ27885.1 159 KCTLCvdrvtvGqepACVKTCPT 181
                 899999866664778*******7 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.3     0.016        15      51      64 ..      36      49 ..      11      53 .. 0.69
   2 ?    3.3  11.1      0.18   1.7e+02       1      62 [.      38     105 ..      38     113 .. 0.73
   3 ?    4.7   1.5     0.063        60       2      19 ..     100     120 ..      99     131 .. 0.77
   4 ?    7.1   4.7     0.011        10       1      16 [.     132     147 ..     132     160 .. 0.80
   5 ?   -0.0   0.1       1.9   1.8e+03      51      62 ..     154     165 ..     146     166 .. 0.74
   6 !   12.0   0.0   0.00032      0.31       7      27 ..     174     194 ..     170     213 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.016
     Fer4_16 51 qeaitgCdiCqdvC 64
                 + ++gC++Cq +C
  CTQ27885.1 36 VTTCIGCKACQVAC 49
                46677778887777 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.18
     Fer4_16   1 rCgtCgkCaevCPt.naikek...kekeiearecisyntaekkdlaedeekckkqeai..tgCdiCqd 62 
                 +C++C++C  +C + n i+ +   +  +++++++  ++     +++e e+++k ++ i   gC  C+d
  CTQ27885.1  38 TCIGCKACQVACSEwNDIRDEvghNVGVYDNPADLTAKSWTVMRFSEVEQNDKLEWLIrkDGCMHCAD 105
                 5************9677998854455566777777776667778888888888666667778887765 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.063
     Fer4_16   2 CgtCgk..CaevCPt.naike 19 
                 C  C    C+++CP+ +ai +
  CTQ27885.1 100 CMHCADpgCLKACPSeGAIIQ 120
                 88999888******8566665 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.011
     Fer4_16   1 rCgtCgkCaevCPtna 16 
                 +C++Cg C+  CP ++
  CTQ27885.1 132 QCIGCGYCIAGCPFDV 147
                 5999999999999776 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 1.9
     Fer4_16  51 qeaitgCdiCqd 62 
                  ++++ C  C+d
  CTQ27885.1 154 DNRVYKCTLCVD 165
                 467788888876 PP

  == domain 6  score: 12.0 bits;  conditional E-value: 0.00032
     Fer4_16   7 kCaevCPtnaikekkekeiea 27 
                 +C+++CPt+ai+  +++ +++
  CTQ27885.1 174 ACVKTCPTGAIHFGSKEDMKT 194
                 7***********886666554 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   3.9     0.006       5.6       1      11 [.      39      49 ..      39      53 .. 0.93
   2 !   10.1   5.0    0.0014       1.3       1      15 []     100     117 ..     100     117 .. 0.78
   3 !    9.8   3.4    0.0018       1.7       1      14 [.     133     146 ..     133     147 .. 0.93
   4 !   11.8   3.4   0.00039      0.37       1      15 []     160     183 ..     160     183 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.006
      Fer4_3  1 CtgCgaCvevC 11
                C+gC aC ++C
  CTQ27885.1 39 CIGCKACQVAC 49
                *********** PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0014
      Fer4_3   1 CtgCg..aCvevCPv.gA 15 
                 C++C    C+++CP+ gA
  CTQ27885.1 100 CMHCAdpGCLKACPSeGA 117
                 ****6444******6476 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0018
      Fer4_3   1 CtgCgaCvevCPvg 14 
                 C+gCg C   CP +
  CTQ27885.1 133 CIGCGYCIAGCPFD 146
                 ************75 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 0.00039
      Fer4_3   1 CtgCg.........aCvevCPvgA 15 
                 Ct C          aCv+ CP+gA
  CTQ27885.1 160 CTLCVdrvtvgqepACVKTCPTGA 183
                 999966788999999********9 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   2.2   0.00088      0.83      39      57 ..      32      50 ..       4      54 .. 0.67
   2 !   10.2  10.9   0.00088      0.83       2      58 ..      39     114 ..      38     115 .. 0.65
   3 ?    5.8   2.0     0.022        21       2      17 ..     100     117 ..      99     131 .. 0.80
   4 !   11.0   4.3   0.00052      0.49       1      23 [.     132     154 ..     132     166 .. 0.75
   5 ?    2.3   0.5      0.27   2.5e+02       7      18 ..     174     185 ..     159     212 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00088
     Fer4_17 39 keekaslCieCgeCerkCP 57
                k   + +Ci+C+ C+ +C 
  CTQ27885.1 32 KLIDVTTCIGCKACQVACS 50
                2257899***********6 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00088
     Fer4_17   2 CiqCgyClpeCpsyea...........ydnepkkllraaklglleeaeke......ekaslCieCg..eCerkCPq 58 
                 Ci+C++C  +C+  ++           ydn  + +++ +++ ++ e+e++       + + C++C   +C ++CP+
  CTQ27885.1  39 CIGCKACQVACSEWNDirdevghnvgvYDNPADLTAKSWTVMRFSEVEQNdklewlIRKDGCMHCAdpGCLKACPS 114
                 ************966644444444555555555566666664444444443333336889*****8446******8 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.022
     Fer4_17   2 CiqCgy..ClpeCpsyea 17 
                 C++C+   Cl++Cps  a
  CTQ27885.1 100 CMHCADpgCLKACPSEGA 117
                 99**9777*****98654 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00052
     Fer4_17   1 rCiqCgyClpeCpsyeaydnepk 23 
                 +Ci+CgyC++ Cp+   + n ++
  CTQ27885.1 132 QCIGCGYCIAGCPFDVPRLNPED 154
                 5***********98666555544 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.27
     Fer4_17   7 yClpeCpsyeay 18 
                 +C++ Cp+++++
  CTQ27885.1 174 ACVKTCPTGAIH 185
                 488899988773 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   1.8   0.00013      0.12       3      15 ..      38      50 ..      36      60 .. 0.92
   2 ?    5.8   1.7     0.024        23       2      16 ..      98     114 ..      96     120 .. 0.86
   3 !   14.2   3.5   5.1e-05     0.048       2      16 ..     131     145 ..     130     146 .. 0.88
   4 ?    4.5   3.7     0.066        62       6      17 .]     171     182 ..     158     182 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00013
      Fer4_4  3 rCigCgsCvaaCP 15
                +CigC++C  aC+
  CTQ27885.1 38 TCIGCKACQVACS 50
                6***********7 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.024
      Fer4_4   2 erCigCg..sCvaaCPq 16 
                 + C +C    C  aCP+
  CTQ27885.1  98 DGCMHCAdpGCLKACPS 114
                 77*****555******7 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 5.1e-05
      Fer4_4   2 erCigCgsCvaaCPq 16 
                 e CigCg C+a CP+
  CTQ27885.1 131 EQCIGCGYCIAGCPF 145
                 56************7 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.066
      Fer4_4   6 gCgsCvaaCPqg 17 
                 + ++Cv +CP+g
  CTQ27885.1 171 QEPACVKTCPTG 182
                 7789******86 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.4    0.0015       1.4      71      93 ..      28      50 ..       9      52 .. 0.83
   2 ?    1.0   0.1      0.83   7.8e+02      77      94 ..      95     114 ..      66     116 .. 0.58
   3 !   13.4   0.7   0.00011       0.1      76      94 ..     127     145 ..     117     147 .. 0.83
   4 ?   -1.4   0.0       4.5   4.2e+03       7      17 ..     174     184 ..     170     207 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0015
     Fer4_22 71 sefkekfgesgCvGCgRCieacp 93
                +e+++ ++ ++C+GC  C+ ac 
  CTQ27885.1 28 QEVAKLIDVTTCIGCKACQVACS 50
                45666779999*******99997 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.83
     Fer4_22  77 fgesgCvGCg..RCieacpv 94 
                 + + gC+ C    C +acp+
  CTQ27885.1  95 IRKDGCMHCAdpGCLKACPS 114
                 36666777752247777775 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 0.00011
     Fer4_22  76 kfgesgCvGCgRCieacpv 94 
                  f++++C+GCg Ci+ cp 
  CTQ27885.1 127 DFQSEQCIGCGYCIAGCPF 145
                 68999************96 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 4.5
     Fer4_22   7 aCtlvCptCsC 17 
                 aC  +Cpt   
  CTQ27885.1 174 ACVKTCPTGAI 184
                 58888888654 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   7.5   4.8e-05     0.045       2      63 ..      36     114 ..      35     116 .. 0.63
   2 ?    4.2  11.9     0.062        59       3      17 ..     131     157 ..     129     215 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.8e-05
      Fer4_8   2 lekCieCgaCqsaCpvlrrtkkhlldargeaae...............dvqeeqvleeeealwsCttcga..CtevCpv 63 
                 +  Ci+C aCq aC  +++ +++  ++ g   +               +v+++++le     + C++c    C ++Cp 
  CTQ27885.1  36 VTTCIGCKACQVACSEWNDIRDEVGHNVGVYDNpadltakswtvmrfsEVEQNDKLEWLIRKDGCMHCADpgCLKACPS 114
                 678***********8777755444444333333344555556655665333333333344678999998888*****96 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.062
      Fer4_8   3 ekCieCgaCqsaCp............v 17 
                 e+Ci+Cg+C + Cp            v
  CTQ27885.1 131 EQCIGCGYCIAGCPfdvprlnpednrV 157
                 79***********95544444444443 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.3   0.00016      0.15       3      26 ..      34      57 ..      33      84 .. 0.80
   2 ?    4.3   7.2     0.072        68       5      65 ..     130     185 ..     126     186 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00016
     Fer4_15  3 vDrdaCigcglCvaeapevfelde 26
                +D ++Cigc +C  +++e   + +
  CTQ27885.1 34 IDVTTCIGCKACQVACSEWNDIRD 57
                899*************98766655 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.072
     Fer4_15   5 rdaCigcglCvaea....pevfeldedglasvllddgeiaegevpddeeeaaqeAaraCPvdAIr 65 
                  ++Cigcg C+a +    p++  +d++ ++ +l        ++v+  +e a    +++CP++AI+
  CTQ27885.1 130 SEQCIGCGYCIAGCpfdvPRLNPEDNRVYKCTLC------VDRVTVGQEPAC---VKTCPTGAIH 185
                 689***********76666666666665554443......346666666654...5688888887 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.7      0.26   2.5e+02      20      43 ..      35      56 ..      20      61 .. 0.76
   2 ?   14.4   0.4   2.6e-05     0.024      22      50 ..      98     126 ..      79     132 .. 0.78
   3 ?    3.5   1.1     0.063        60      20      40 ..     129     147 ..     127     150 .. 0.86
   4 ?    2.4   0.5      0.14   1.3e+02      27      39 ..     170     182 ..     153     189 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.26
                HHTT----TT-HHHHCSTT---HH CS
     Fer4_20 20 eAsRClqCkkapcvkgCPveidip 43
                + + C+ C  + c+ +C   +di+
  CTQ27885.1 35 DVTTCIGC--KACQVACSEWNDIR 56
                56679999..78999999888886 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 2.6e-05
                 TT----TT-HHHHCSTT---HHHHHHHHH CS
     Fer4_20  22 sRClqCkkapcvkgCPveidipefikkia 50 
                 + C++C+++ c k+CP e  i ++ + i 
  CTQ27885.1  98 DGCMHCADPGCLKACPSEGAIIQYANGIV 126
                 56*******************99987765 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.063
                 HHTT----TT-HHHHCSTT-- CS
     Fer4_20  20 eAsRClqCkkapcvkgCPvei 40 
                 +++ C+ C   +c++gCP ++
  CTQ27885.1 129 QSEQCIGC--GYCIAGCPFDV 147
                 5789****..89******875 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.14
                 -TT-HHHHCSTT- CS
     Fer4_20  27 CkkapcvkgCPve 39 
                  +++ cvk+CP+ 
  CTQ27885.1 170 GQEPACVKTCPTG 182
                 36889******86 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.6   3.6e-05     0.034       1      28 [.      34      61 ..      34      80 .. 0.81
   2 ?   -1.0   2.3       2.9   2.8e+03       3      17 ..      97     113 ..      95     115 .. 0.77
   3 ?    8.3   9.3    0.0036       3.4       3      57 ..     130     185 ..     126     186 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.6e-05
     Fer4_13  1 VDrdtCiacgaCvelaPdvFeeddegga 28
                +D  tCi+c+aC  ++ +  ++ de g+
  CTQ27885.1 34 IDVTTCIGCKACQVACSEWNDIRDEVGH 61
                7889**************9999998764 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.9
     Fer4_13   3 rdtCiacga..CvelaP 17 
                 +d C+ c+   C +++P
  CTQ27885.1  97 KDGCMHCADpgCLKACP 113
                 68899998555999999 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0036
     Fer4_13   3 rdtCiacgaCvelaP.dvFeeddeggasvvaeqptseeekadaeeAadaCPvesIg 57 
                  ++Ci+cg C + +P dv + ++e+++++     ++     +  + +++CP+ +I+
  CTQ27885.1 130 SEQCIGCGYCIAGCPfDVPRLNPEDNRVYKCTLCVDRVTVGQEPACVKTCPTGAIH 185
                 589************99*********99988755554444444455679****998 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.7   0.00049      0.46      44      80 ..      22      58 ..       4      65 .. 0.80
   2 ?    3.6   7.8     0.078        73      58      95 ..      97     143 ..      79     144 .. 0.67
   3 ?   12.7   3.8   0.00012      0.11      58      95 ..     130     167 ..     123     173 .. 0.91
   4 ?    1.0   0.2      0.51   4.8e+02      66      74 ..     174     182 ..     171     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00049
     Fer4_18 44 kkalkekeerkekgagdcidcescvkvcPtgidirkG 80
                ++  +++e  k  +++ ci c++c   c    dir+ 
  CTQ27885.1 22 QARDHQQEVAKLIDVTTCIGCKACQVACSEWNDIRDE 58
                4556667777788899*******************95 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.078
     Fer4_18  58 agdcidces..cvkvcPtg...idirkGl...q.leciscllcidac 95 
                 +  c++c    c+k cP +   i   +G+   q  +ci c+ ci  c
  CTQ27885.1  97 KDGCMHCADpgCLKACPSEgaiIQYANGIvdfQsEQCIGCGYCIAGC 143
                 456888864449999998633355566643224257*******9998 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 0.00012
     Fer4_18  58 agdcidcescvkvcPtgidirkGlqleciscllcidac 95 
                 + +ci c++c++ cP ++   +       +c+lc+d  
  CTQ27885.1 130 SEQCIGCGYCIAGCPFDVPRLNPEDNRVYKCTLCVDRV 167
                 578********************************975 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.51
     Fer4_18  66 scvkvcPtg 74 
                 +cvk cPtg
  CTQ27885.1 174 ACVKTCPTG 182
                 699999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2411.28
//
Query:       CTQ27886.1  [L=804]
Description: Formate dehydrogenase-O major subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-22   77.8   0.0    7.6e-21   74.6   0.0    2.1  2  Molybdopterin    Molybdopterin oxidoreductase
    5.4e-17   61.8   0.0    1.4e-16   60.5   0.0    1.7  1  Molydop_binding  Molydopterin dinucleotide binding domain


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.0   8.4e-25   7.6e-21     103     379 ..       2     377 ..       1     380 [. 0.82
   2 ?    0.7   0.0     0.022     2e+02     387     427 ..     402     442 ..     400     447 .. 0.83

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 8.4e-25
                    SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC.-EEEEECSSB-HCGGGCSEEEEEHTTTHHHHHHHHHHHHHHCCCCTCHHHHHHEEC CS
  Molybdopterin 103 snpledlensdliilwGsNvreerpilnarirkaalkkk.akvivigpryaellkfadewlaikpgtdaalalamghvilqelkvdkeflrkytyg 197
                    +n  +d+ n+ l++++G N +e +p+   r  ++a+  + ak+ivi+pr++ +++ ad + +i+ gtd  + l++   il  l+++++f+r yt +
     CTQ27886.1   2 TNHWVDIKNANLVVVMGGNAAEAHPVG-FRWAMEAKIHNgAKLIVIDPRFTRTASVADFYTPIRSGTDITF-LSGV--ILY-LLNNEKFNREYTEA 92 
                    67788**********************.555554444445************99*****************.5544..443.44555576777666 PP

                    HHHCCCCCCCEECCS..........................................................HHHHHHCCHH...HHHHHHHHHH CS
  Molybdopterin 198 keetdmpllvtleee..........................................................tgkkkevvar...iarelarnaa 232
                    + +   ++ +                                                               ++ +++ +++   ++ e +++  
     CTQ27886.1  93 YTNASLIVREDY--SfddglfsgynaekrqydktswnyeldengfakrdttlqhprcvwnllkqhvsrytpdvVENICGTPKAdflKVCEYIAETS 186
                    666555554444..35699******************************************************77788777762224455666667 PP

                    HHTSSEEEEECHHHHTSTTHHHHHHHHHHHHHHCTHCSSTTCEEEEESSCTTHHHCHHHHTCCTTCCCCCCCTT...................... CS
  Molybdopterin 233 ktagksmiivGaglnhrqdgdaiyravinLallvgnvgqpgGgwahlnGqlilagaaekvgalpvllsvkslke...................... 306
                    + ++ + +++  g ++++ g++++r+++++ ll+gn+g  gGg+++l+G  +++g   + g l++ l+ +++                        
     CTQ27886.1 187 APDKTASFLYALGWTQHSIGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQG-LTDLGLLSTSLPGYMSLPnekqadlqtyltantpkpllkd 281
                    7788899999***************************************888988.6666777677777777666888888888888888889999 PP

                    ......................HHHHHCCCTTTCSTS.S--ECGGCHHHHHHTTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEESCSSHH CS
  Molybdopterin 307 ......................ekikfaaeqpgnlgn.fprnlfversnllkssgkkvlyllgnnpevdhadenevekalekldlvvvldgrltst 379
                                          ++++   ++ + l++  + +++ +  +++++++++ +   g np+ + +++n+v+  l kl+++v++d   t+t
     CTQ27886.1 282 qvnywgnypkffvsmmkaffgdKATAENSWGYDWLPKwDKSYDVLQYFEMMNQGKVNGYICQGFNPVASFPNKNKVVASLSKLKFLVTIDPLNTET 377
                    9999999999999999999977555555555555543245678888889999999999999999**************************887776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.022
                    EEBE-CCGSEEEEE-TTSEEEEEEESSS-STT-BEHHHHHH CS
  Molybdopterin 387 LPaatwyEkedlytndegrfqhlkqavsppgeaksdwkIlk 427
                    LP++++ E+++  +n+ +  q   +  ++pg a +d +Il 
     CTQ27886.1 402 LPSTCFAEENGSIVNSGRWLQWHWKGADAPGIAVTDGEILA 442
                    9**************99999987777788888877777765 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   1.5e-20   1.4e-16       4     110 ..     682     797 ..     679     798 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 1.5e-20
                      EEE-BTTBSTTTTTCGCCHHHHCSSS-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-T........TEEEEESSHCC....... CS
  Molydop_binding   4 itgrsldqlhsqtrtrpvlrlakpepevveinpedAaalGikdGdlVevesrrGsvevrakvtervrp........Gvvfmpfgwwe..agekg 87 
                      +t+r  +++h +t++    + a+pe+ +vei ++ A++lGi +Gd+V+v+s rG ++++a+vt+r+r         +++ +p +w++    +kg
       CTQ27886.1 682 TTYRLTEHFHYWTKHALLNAIAQPEQ-FVEIGEKLANKLGIGHGDTVKVSSNRGYIKAKAVVTKRIRTlkvdgkdiDTIGIPIHWGYegVAKKG 774
                      89999*******************99.***************************************97777777779***********99**** PP

                      S-GHCTS--SCSTTT--CSTT-E CS
  Molydop_binding  88 gnaNaltddatdplsgtpefksv 110
                        aN+lt+   d  ++tpefk++
       CTQ27886.1 775 FIANTLTPFVGDANTQTPEFKAF 797
                      *********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 6375.87
//
Query:       CTQ27887.1  [L=195]
Description: Formate dehydrogenase-O alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-19   69.5   0.2    4.3e-19   68.3   0.1    1.7  2  Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
    2.8e-06   26.6   0.1    3.7e-06   26.2   0.1    1.3  1  Molybdopterin   Molybdopterin oxidoreductase
     0.0063   16.3   5.5      0.022   14.6   5.5    2.0  1  TAT_signal      TAT (twin-arginine translocation) pathway sig
     0.0094   16.2   0.5       0.54   10.5   0.6    2.8  3  Rieske_3        Rieske 3Fe-4S


Domain annotation for each model (and alignments):
>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.1   9.5e-23   4.3e-19       2      54 ..      44     103 ..      43     104 .. 0.91
   2 ?   -2.7   0.0       1.4   6.4e+03      37      43 ..     155     165 ..     139     166 .. 0.66

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 9.5e-23
                     EEEEEE-SSBTT--EEEEEE.......ETTEEEEEEE-TTSTTTTT---HHHHTCHHCCC CS
  Molybdop_Fe4S4   2 kvvktaCpyCgvgCglevhv.......kdgkivkvegdpdhpvnegrlCvKGrtllervy 54 
                     ++++++C+yC+vgCgl++++       ++  i ++egdpdhpvn+g lC+KG+ l ++++
      CTQ27887.1  44 RETRNTCTYCSVGCGLLMYSlgdgaknAKASIFHIEGDPDHPVNRGALCPKGAGLVDFIH 103
                     6799****************9988877777777***********************9997 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.4
                     TTT....T--- CS
  Molybdop_Fe4S4  37 vne....grlC 43 
                     vn+    g+lC
      CTQ27887.1 155 VNRwlttGMLC 165
                     55555558888 PP

>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   8.3e-10   3.7e-06       1      44 [.     107     143 ..     107     192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 8.3e-10
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGG CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdr 44 
                    Rlk P +R  a g +k++++sWdeA++ ia+ +k+     + d+
     CTQ27887.1 107 RLKFPEYR--APGSDKWQQISWDEAFDRIAKLMKE-----DRDA 143
                    9*******..*********************9998.....3333 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   5.5   4.9e-06     0.022       1      24 [.       2      25 ..       2      33 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.9e-06
  TAT_signal  1 klSRRdFLKgsAAaaAAaalggca 24
                ++SRR+F K  A+++A++++++++
  CTQ27887.1  2 QVSRRQFFKICAGGMAGTTAAALG 25
                58******************9987 PP

>> Rieske_3  Rieske 3Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.6   0.00012      0.54       1      16 [.      50      65 ..      50      79 .. 0.79
   2 ?    2.2   0.0      0.05   2.2e+02      56      92 ..      69     105 ..      66     108 .. 0.80
   3 ?    0.0   0.0      0.23     1e+03      54      77 ..     136     159 ..     119     175 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
                -SSBTT--EEEEEEEE CS
    Rieske_3  1 CdyCivgCgYkvYkWp 16
                C yC vgCg  +Y+  
  CTQ27887.1 50 CTYCSVGCGLLMYSLG 65
                9*********999864 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.05
                 ETTEEEEEEEEE-TT-TTTTT---TTGGGTTTTS-BT CS
    Rieske_3  56 kdgkdvnvvivpdkdcvvnkGdssirGgrlaeklyse 92 
                 k++k     i  d d  vn+G    +G+ l + ++se
  CTQ27887.1  69 KNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFIHSE 105
                 56677777899999********999999887766665 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.23
                 EEETTEEEEEEEEE-TT-TTTTT- CS
    Rieske_3  54 vkkdgkdvnvvivpdkdcvvnkGd 77 
                 ++k+ +d n +   d  ++vn+ +
  CTQ27887.1 136 LMKEDRDANFIAQNDAGTTVNRWL 159
                 468889999999999999999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1641.54
//
Query:       CTQ27888.1  [L=278]
Description: formate dehydrogenase formation protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-69  233.0   0.1    4.5e-69  232.7   0.1    1.0  1  FdhD-NarQ  FdhD/NarQ family


Domain annotation for each model (and alignments):
>> FdhD-NarQ  FdhD/NarQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.7   0.1   2.5e-73   4.5e-69       1     236 [.      38     275 ..      38     276 .. 0.91

  Alignments for each domain:
  == domain 1  score: 232.7 bits;  conditional E-value: 2.5e-73
                 E--EEEEEEETTEEEEEEEE-SSSHHHHHHHHHHHCTS--SGGGEEEEEEETTTEE....EE-S..........---------------.---...--H CS
   FdhD-NarQ   1 veEepltivvngrelatlmatpadleelalGfllsegliesaediesievdedeas....vavatra.kaedkeerrtakrvvtsgCglcgkesleell 94 
                 +eE+p+++v+ng +++++ma+p+dle++a+Gf+lseg+ie++++i  ++v   ++     +++++r+       ++r++  ++++gCg+cg+e+l+++ 
  CTQ27888.1  38 AEEVPVALVYNGISHVVMMASPKDLEQFAVGFSLSEGIIEHRREIFGMDVVAVCNGlevqIELSSRRfMG---LKARRRALAGRTGCGVCGVEQLNDIG 133
                 58*******************************************9999998776644223334344322...33444445*****************7 PP

                 -----------EEGGGHHHHHHHHHTS-SHHHHHS--EEEEEEE.TTEEEEEEEESSHHHHHHHHHHHHHT.TSS-SSSEEEESS-B-HHHHHHHHHHT CS
   FdhD-NarQ  95 etlelpesdlklsaeallrlmdalrekqelfketggvHaaalfdadgellavreDvGRHnAlDkviGaallegldlsdkilvvsgRlssemvqKaarag 193
                 + ++++  + +++ ++l +++++l++ q + + tg++Haaa+++ +gel    eDvGRH AlDk++G+ +  g   ++++ +vs+R+s+emvqKaa++g
  CTQ27888.1 134 KPVQPLPFTQSFDLANLDQALAHLNDFQPVGRLTGCTHAAAWVRLTGELAGGFEDVGRHVALDKLLGRRAEVGEGWQHGAALVSSRASYEMVQKAAMCG 232
                 7777776689***************************************************************************************** PP

                 -SEEEESS-B-HHHHHHHHHHT-EEEEEEETTEEEEEE-GGGE CS
   FdhD-NarQ 194 ipvlvsvsaptslavelAeeagltlvgfvrgkrfnvYtgaeRi 236
                 +++l +vsa+t+lave+Ae+++ltlvgf++ +r +vYt+++R+
  CTQ27888.1 233 VEILFAVSAATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRL 275
                 ******************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2386.10
//
Query:       CTQ27889.1  [L=23]
Description: hypothetical protein CH1034_20028 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (23 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       145  (0.00808746); expected 358.6 (0.02)
Passed bias filter:                      122  (0.00680462); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 206.39
//
Query:       CTQ27890.1  [L=70]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-11   41.6   4.1    1.2e-10   41.2   4.1    1.2  1  DUF1471   Protein of unknown function (DUF1471)
  ------ inclusion threshold ------
       0.57   10.4   8.5        1.8    8.8   4.6    2.1  2  DUF4148   Domain of unknown function (DUF4148)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   4.1   1.3e-14   1.2e-10       5      54 ..      23      68 ..      21      70 .] 0.93

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.3e-14
                EEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEE CS
     DUF1471  5 gtisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAel 54
                +t++++  +++++ +e++++++A+++GA++Y It+a +  g+ +h tAel
  CTQ27890.1 23 ETVTAT--ASTMDGAEAKIAAQAQAAGASSYKITEAFT--GNRVHMTAEL 68
                577777..******************************..*********8 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.6    0.0002       1.8       1      22 [.       1      26 [.       1      38 [. 0.80
   2 ?    3.6   0.1    0.0084        75      38      47 ..      41      50 ..      39      57 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0002
     DUF4148  1 Mkstliaaalaaavaaaaala....a 22
                Mks +++ a++a++a+ a +a     
  CTQ27890.1  1 MKSIKTFVAVIAMAASFASFAaetvT 26
                9**999******99999999966541 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0084
     DUF4148 38 aqaeaaGylp 47
                aqa+aaG+++
  CTQ27890.1 41 AQAQAAGASS 50
                8******876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 550.96
//
Query:       CTQ27891.1  [L=326]
Description: 6-phosphofructokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-62  209.6   0.6      7e-62  209.3   0.6    1.0  1  PFK       Phosphofructokinase
  ------ inclusion threshold ------
      0.028   14.0   0.0      0.096   12.3   0.0    2.0  1  DAGK_cat  Diacylglycerol kinase catalytic domain


Domain annotation for each model (and alignments):
>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.3   0.6   7.8e-66     7e-62       1     284 []       2     280 ..       2     280 .. 0.96

  Alignments for each domain:
  == domain 1  score: 209.3 bits;  conditional E-value: 7.8e-66
                 EEEEEEESS--TTHHHHHHHHHHHHHHTT-EEEEETTHHHHHHTT-EEEE-SGGGTT-TT--S-TT-----GGGGSHHHHHHHHHHHHHHT--EEEEEE CS
         PFK   1 riailtsGGdapGmNaairavvrtaikkglevygireGfeGlieeeiekltledvsgilsegGtiLgsaRskefkeregrkkaaenlkklgidaLvviG 99 
                 +i+i+ sGGd +GmN  i +++r a   ++++  ++ G+ Gl+e++ +++ ++d+ + + +   i+ s R+ ++ +r++++ +a++lk l+id L++ G
  CTQ27891.1   2 KIGIVISGGDVSGMNNFIFQIARQA---NADITLFNGGIPGLLEKSHQDMAWRDLVDYSITAVPIITSGRTSRKLQRSEYESIAKKLKSLRIDVLIMAG 97 
                 7*****************9999998...5899***************************************99989999******************** PP

                 SHHHHHHHHHHHHT..T....--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEES-TT-THHHHHHHHHHT-SEEE-TT CS
         PFK 100 GdgslkganklseerkglleelkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstaksh.krvfvvEvmGrncGwlAlmaglaggadvilipE 197
                 Gdgsl+ +n+ls e+ +    ++++g+  TidND++g+dytiGf+TA+++i++ + +l++t ++   rvf+vE+ G++cG l+l +++ ++ad++lipE
  CTQ27891.1  98 GDGSLQFLNTLS-EF-E----INCFGVGMTIDNDVYGSDYTIGFSTACEQIIKEVSRLRNTGRALpGRVFMVEILGGYCGELTLQSAIKCNADIALIPE 190
                 ************.54.7....****************************************************************************** PP

                 S---HHHHHHHHHHHHT.T-S-EEEEEESSS..S-.......HHHHHHHHHHHHSS-EEEEE-GGGGG-S---HHHHHHHHHHHHHHHHHH CS
         PFK 198 epfdieeliekikklrkkgkkksiivvaEgakdkeg....iiaeelakeieektgievrvtvlGhlqrGgspsafDrilatrlGikavell 284
                  ++ +  l+e+i++  +  +++ +i+++Eg++++ +    ++ + + k++e + g+++r t++G+  r+g p++ + + +t ++ + v+++
  CTQ27891.1 191 AQMPLAVLAERITRKLS-TQNSVVILCSEGYTKEYSpgfqGAIDTMIKQLEPQIGVRIRKTIVGYGLRSGDPTCEEIYQGTIMASEVVRCI 280
                 **************995.78999********96444889999999999**999*********************************99986 PP

>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.1e-05     0.096      42      69 ..      76     103 ..      56     153 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.1e-05
                 THHHHHHHHHHHCC-SEEEEEESHHHHH CS
    DAGK_cat  42 gdakelakeakeegvdlivvaGGDGtvs 69 
                  + +++ak++k+ ++d++++aGGDG ++
  CTQ27891.1  76 SEYESIAKKLKSLRIDVLIMAGGDGSLQ 103
                 556889*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2618.71
//
Query:       CTQ27892.1  [L=104]
Description: PTS system, IIB component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-08   35.6   1.3    1.6e-08   35.1   1.3    1.3  1  PTS_IIB   PTS system, Lactose/Cellobiose specific IIB subunit
  ------ inclusion threshold ------
      0.071   13.1   0.2       0.13   12.3   0.2    1.4  1  Gp45_2    Phage gene product 45.2
        0.2   12.0   0.0       0.25   11.7   0.0    1.2  1  DUF2834   Protein of unknown function (DUF2834)


Domain annotation for each model (and alignments):
>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   1.3   2.7e-12   1.6e-08       1      84 [.       3      85 ..       3      91 .. 0.75

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.7e-12
                EEEEEESSSHHHHHHHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEESSGGCTHHHHTT.SEEEEECTTH.HHCCHCH CS
     PTS_IIB  1 killaCgaGmatSlmaaeklekaakelgieaegeagveleaeeiaddaDlvllapqvrvkdlarfag.kpvavinikd.algimdg 84
                kil++Cg G+++S+ ++++ + ++k+l+i a++e+++  ea + ++  D +l+ + ++ + l  +a    ++++ + + + +++++
  CTQ27892.1  3 KILCVCGCGLGSSFAIEMTAKAVLKKLEIPAHIEHTTVSEAGAFKS--DMILTQKTFA-DILTADASeEEIKRVVVLNkLTDKEEI 85
                8************************************777777666..*******999.344444444224444444414445554 PP

>> Gp45_2  Phage gene product 45.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   2.2e-05      0.13       7      41 ..      69     100 ..      65     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.2e-05
      Gp45_2   7 EiKryvlidsFsneEkiltEsqLleAFkaEryqKi 41 
                 EiKr v+ +  +++E i  E+++  AF +Er+ K+
  CTQ27892.1  69 EIKRVVVLNKLTDKEEI--ETKI-VAFLKERHLKV 100
                 9***************9..6665.49999999887 PP

>> DUF2834  Protein of unknown function (DUF2834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.2e-05      0.25       4      72 ..       4      74 ..       1      80 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
     DUF2834  4 llailglvlpwyfnipfvaeng...lslalfiqdafanpaasslslDlliaavallvfivvegrrlgvkrrw 72
                +l++ g+ l+ +f+i++ a+     l++ + i+ + +++a + +  D++++  +++  + +++ + ++kr+ 
  CTQ27892.1  4 ILCVCGCGLGSSFAIEMTAKAVlkkLEIPAHIEHTTVSEAGA-FKSDMILTQKTFADILTADASEEEIKRVV 74
                79*****************995567************88876.577**********9999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       943  (0.0525964); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 874.10
//
Query:       CTQ27893.1  [L=455]
Description: putative sugar-specific permease, SgaT/UlaA family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.6e-121  403.6  37.9   1.4e-120  403.1  37.9    1.2  1  EIIC-GAT  PTS system sugar-specific permease component


Domain annotation for each model (and alignments):
>> EIIC-GAT  PTS system sugar-specific permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.1  37.9  7.6e-125  1.4e-120       2     396 .]      12     406 ..      11     406 .. 0.99

  Alignments for each domain:
  == domain 1  score: 403.1 bits;  conditional E-value: 7.6e-125
    EIIC-GAT   2 ilggpaillglivligllllkkklskaikgtlkaiiGflilslgagllvsslkpvaeafseafglkidvvwpneaivalassqelgsevalilllgliv 100
                 +lg+++il+++i+++gl+l+kk+++k+ +gt+k+ +Gfli+ +g++++v +l+ + + f++ fg+  + +   +ai++la   elgseval+ll++++v
  CTQ27893.1  12 LLGQASILIAFIAMLGLILQKKSPGKTAEGTFKTLLGFLIMMAGINIIVATLTFLNDIFTQGFGM-KGYITDVAAIAGLANR-ELGSEVALTLLVIFAV 108
                 799**************************************************************.6**************6.99************** PP

    EIIC-GAT 101 niilarfkktttlkyifltghvmlqqalvlavvlyvlgfgnvalviigslllglywlvlpaltqkftrkitgndgvalghqqtlgyalaalvgklfgkk 199
                 nii+ar+++   lkyifltg+ +l++a++ av+ y  g+++v l+++g+++ g++ +++pal+q+++r+itg+d+valgh+ t+gy++ a+v+k++gk 
  CTQ27893.1 109 NIIIARLTP---LKYIFLTGQALLWMATIGAVIGYKSGLTGVPLILTGGIFGGVMAVLMPALAQPVVRRITGSDDVALGHFCTIGYLVQAAVAKVVGKG 204
                 *********...*************************************************************************************** PP

    EIIC-GAT 200 ekstekiklpkklgflrdnivagailmlilfllaaliagkel....sggknfvvqiltqaltfaaglviilkgvrmfveelvpafkgiseklvpgavpA 294
                 ++ste+++lp++++fl+d++ a+a++m+ ++l+ a++ag+++    sgg n+++++++q+++f+ag++++ +gvr++++elvpaf+gi+ ++vp+a+pA
  CTQ27893.1 205 SRSTEDLELPDNFKFLQDTYLAMAVVMVPMYLIPAIAAGPQYiaqfSGGINYLMYAFMQSIQFVAGVFVLYSGVRLLLNELVPAFRGIAMRIVPDAKPA 303
                 *************************************999988888999************************************************** PP

    EIIC-GAT 295 lDvavvfgfapnavtiGfllsfigqllallilillgaaiilPgvlplfflgatagvfanavggikgaiigsfisGllilflpalllpllgelgmagvtf 393
                 lD++v+f++apnav++Gfl +++g ++++l+++++g+a+ilPg+l+ ff g+tagvf+na gg++ga+ig++i+Gl+i+flpa+l+p+l + g++gvtf
  CTQ27893.1 304 LDCPVLFPYAPNAVIVGFLATTVGSIIGMLVFPMFGLAMILPGLLTNFFAGGTAGVFGNALGGRRGAMIGGVIHGLFITFLPAILVPMLESYGFTGVTF 402
                 *************************************************************************************************** PP

    EIIC-GAT 394 .dad 396
                  d+d
  CTQ27893.1 403 sDSD 406
                 9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3232.73
//
Query:       CTQ27894.1  [L=280]
Description: putative ketose-bisphosphate aldolase, class-II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-87  293.1   0.5    2.4e-87  293.0   0.5    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.0   0.5   1.3e-91   2.4e-87       2     276 ..       5     280 .]       4     280 .] 0.95

  Alignments for each domain:
  == domain 1  score: 293.0 bits;  conditional E-value: 1.3e-91
                    HHHHHHHHHHHHT-.-EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHT...-EEEEEE----GHHHHHHHH CS
  F_bP_aldolase   2 nlkellkkAkeegy.avgafnvtnletvkavleaaeeaksPvIlqlsegaaakyaggaealaelvraaaeaykkasvpvalhlDHgakleglkkai 96 
                    n +e+lk A+e+ + a+g fn + +e++ a+++aa++++sP+++q+s+g+a++   g+++l++ vr++a+   + ++p +lhlDH+++++ ++ a+
     CTQ27894.1   5 NFNEILKIAQERDFkAIGSFNLHCIEMLPAFFKAAQNSRSPLMIQISTGTAEYL--GYRLLVDAVRSLAD---SENIPTCLHLDHCSDIKAIETAM 95 
                    5789********988************************************877..89************...679******************** PP

                    HHS-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------TT-TT..TS--HHHHHHHHHHHH-EEEE--SS---SS--SS..-- CS
  F_bP_aldolase  97 eagfsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgvvaeek..lyTdpeeaeefveetgvdalAvaiGnvHGvykpkpkLd 190
                    +agfsSvM+DgS+l+leeNi +t+ vve+a++++++vE+ElG igg+edg +++++  ++T++e+a +fv+et+vd+lAv++G+vHG y+ k++++
     CTQ27894.1  96 NAGFSSVMYDGSHLSLEENIGNTRIVVEMARPRNITVEGELGAIGGSEDGKAVAAEdiCFTTVEDATRFVKETQVDMLAVSVGTVHGLYTGKAQIQ 191
                    ************************************************9984444456**********************************99** PP

                    THHHHHHHHHH.--SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHHHHG.GE-HH.H-HHHHHHHHHHHHHHHHHHHHHHTT CS
  F_bP_aldolase 191 ferlkeiqkav.vplVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkavkke.kenkk.ydprkllkeaeeamkevvkekiellg 276
                      rlk+i++a+ vplVlHGg+gv+de++r a++ G++K+N+ t+++ ++++ +k++ ++ k   + rk+l +a +a+++v++ek+ l++
     CTQ27894.1 192 HARLKAISEATgVPLVLHGGTGVSDEDMRLAVTEGINKVNVGTEMNVQWVDRCKSTfEKGKVnDSVRKFLIPANQAVTAVLMEKMALFK 280
                    *****************************************************8776334444688999****************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2295.75
//
Query:       CTQ27895.1  [L=89]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0037   16.8   5.2      0.012   15.2   0.2    2.0  2  MscS_porin   Mechanosensitive ion channel porin domain
  ------ inclusion threshold ------
      0.059   13.4   0.3      0.097   12.8   0.3    1.4  1  IFP_35_N     Interferon-induced 35 kDa protein (IFP 35) N-ter
       0.21   11.5   3.5       0.44   10.5   1.6    1.9  2  Prefoldin_2  Prefoldin subunit


Domain annotation for each model (and alignments):
>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   1.6   0.00091       5.4      36      63 ..      13      40 ..       7      46 .. 0.54
   2 !   15.2   0.2     2e-06     0.012       4      54 ..      36      86 ..      35      88 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00091
  MscS_porin 36 kkkaeelqkaiddaPkelrelqqeleal 63
                ++ ++++ ++ ++  +e++ l+ el++ 
  CTQ27895.1 13 QNPLQDYDQQSRQLAEEIARLEGELQRQ 40
                4445555555555555555555555554 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2e-06
  MscS_porin  4 elekakldeaeqkallqdLeqalnlLdkidkskkkaeelqkaiddaPkelr 54
                el+ + +++  qk+l  ++++al++ +k + +++++++l  +id+  + +r
  CTQ27895.1 36 ELQRQPDNSDVQKTLMLTYNRALSVYAKSKSHRQDIDALFLQIDNLRNIIR 86
                67888899***********************************99877665 PP

>> IFP_35_N  Interferon-induced 35 kDa protein (IFP 35) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   1.6e-05     0.097       7      32 ..      21      46 ..      15      51 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
    IFP_35_N  7 keniqLkeeiqkLeaELQettrefqi 32
                ++  qL eei +Le ELQ++  ++ +
  CTQ27895.1 21 QQSRQLAEEIARLEGELQRQPDNSDV 46
                66789*************98766655 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.6   7.3e-05      0.44       2      30 ..      11      39 ..      10      57 .. 0.80
   2 ?    0.9   0.0      0.07   4.2e+02       5      29 ..      62      86 ..      59      88 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  2 elinkfqqlqqqlqqlaqqikqletqlke 30
                 +++n +q++ qq +qla++i+ le +l++
   CTQ27895.1 11 KEQNPLQDYDQQSRQLAEEIARLEGELQR 39
                 68999*********************995 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.07
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  5 nkfqqlqqqlqqlaqqikqletqlk 29
                 +k +  +q++++l  qi++l++ ++
   CTQ27895.1 62 AKSKSHRQDIDALFLQIDNLRNIIR 86
                 6778889999999999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1175  (0.0655363); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 713.83
//
Query:       CTQ27896.1  [L=145]
Description: Ascorbate-specific PTS system, EIIA component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-28   97.4   0.0    7.7e-28   97.2   0.0    1.0  1  PTS_EIIA_2      Phosphoenolpyruvate-dependent sugar phosphotr
  ------ inclusion threshold ------
      0.023   14.6   0.0      0.027   14.4   0.0    1.2  1  Ploopntkinase3  P-loop Nucleotide Kinase3


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   8.6e-32   7.7e-28       2     141 ..       7     145 .]       6     145 .] 0.96

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 8.6e-32
                 HHHCCGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTE..TCEE----SCCC.BSS-EEEEEEEEEEEE-T-GCC-CEEEEE CS
  PTS_EIIA_2   2 lltkelifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgig..ngvAiPHarlea.vkkpaiavlklkepvdfeasdgkpvklif 97 
                 l++ + i++ +  ++++++i+ +a++l+++g+++ +  y +a++ +  + + +++  +g+AiPHar+e  v ++ ++++ l++p+ f   d +++++++
  CTQ27896.1   7 LIEADAIQVGVVESDWQRVIKLAARPLEAKGFISTE--YSQAVIDNTLNHGAYYVfdEGIAIPHARPECgVRRNCFSLVLLEKPIPFA--DSEKADIVI 101
                 67889999999999********************88..****************777*********9977******************..899****** PP

                 EEE-SSCHH.HHH.HHHHHHHHHCSCCHHHHHHC--SHHHHHHHH CS
  PTS_EIIA_2  98 llalpekdaehlk.ilaqLaellkdeefvekLrkakseeeilell 141
                 ++ + +++a h++  + +++ ll++++ + kLr+a+s ee+++ll
  CTQ27896.1 102 MFGARDSNA-HIEeGIRSIVALLDNNDTMAKLRTARSREEVVALL 145
                 *********.***9****************************987 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     3e-06     0.027      56     133 ..      72     139 ..      24     142 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3e-06
  Ploopntkinase3  56 elGkrreafsGtdalassiidkavPwvetkPydlllaeGarlankrfldaaleaGyevtlalldhdqa.dawrkarskk 133
                     e G+rr+ fs        +++k +P+ +++  d+++  Gar +n     a +e G   ++alld +++  + r+ars++
      CTQ27896.1  72 ECGVRRNCFSL------VLLEKPIPFADSEKADIVIMFGARDSN-----AHIEEGIRSIVALLDNNDTmAKLRTARSRE 139
                     77888888874......589*********************987.....67999*********9987526789999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1196.07
//
Query:       CTQ27897.1  [L=197]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00036   21.1   0.0    0.00057   20.4   0.0    1.4  1  AAA_18          AAA domain
     0.0019   18.5   0.0     0.0027   18.0   0.0    1.2  1  Hydin_ADK       Hydin Adenylate kinase-like domain
     0.0027   17.9   0.0      0.018   15.2   0.0    1.9  1  AAA_33          AAA domain
     0.0084   16.0   0.0      0.014   15.2   0.0    1.4  1  CPT             Chloramphenicol phosphotransferase-like prote
  ------ inclusion threshold ------
      0.015   15.4   0.0       0.14   12.2   0.0    2.0  2  SKI             Shikimate kinase
      0.038   13.4   0.0      0.061   12.8   0.0    1.3  1  KTI12           Chromatin associated protein KTI12
      0.096   11.9   0.0       0.18   11.1   0.0    1.4  1  Zeta_toxin      Zeta toxin
       0.11   12.3   0.0       0.15   11.7   0.0    1.2  1  Cytidylate_kin  Cytidylate kinase
       0.17   12.2   0.0       0.75   10.1   0.0    1.9  1  AAA_22          AAA domain
       0.18   12.2   0.1       0.39   11.1   0.1    1.8  1  AAA_16          AAA ATPase domain
       0.21   12.0   0.0       0.51   10.8   0.0    1.6  2  AAA_17          AAA domain


Domain annotation for each model (and alignments):
>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.5e-07   0.00057       1      22 [.      13      34 ..      13      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.5e-07
      AAA_18  1 IlltGtpGvGKttlakeLskrl 22
                Il++G+p++GK+t+++ L++  
  CTQ27897.1 13 ILINGIPASGKSTITRLLAETF 34
                99****************9975 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.7e-06    0.0027       1      33 [.      12      44 ..      12      50 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.7e-06
   Hydin_ADK  1 aiivhGaPlsGKtatavtLakkYeaAlltiDsv 33
                ai+++G P sGK++++  La ++   +ltiD +
  CTQ27897.1 12 AILINGIPASGKSTITRLLAETFSLPVLTIDGI 44
                89*****************************97 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.1e-05     0.018       2     121 ..      13     132 ..      13     152 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.1e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytr.vldrlyqilnelarkalsagrnvil.datnlsrrerarflklarrlgvp 98 
                 +l+ G p+sGKst  + l++     +l+ d +++   ++  + ++  +r +   +y+ +     ++ ++ +++++    ++  + r+ + +l++++gv+
  CTQ27897.1  13 ILINGIPASGKSTITRLLAETFSLPVLTIDGIKEPFMARLAPVDRPMNRqLGCAAYEVI---WSIVGASPASMVWlIDAWFGFQPRETLQRLLQQAGVE 108
                 5789************9998888999999997776665555544444442445566666...3334455555554444555667778888888888999 PP

      AAA_33  99 vri.vvvetdeetlkeRlakRaan 121
                   i v+ + ++e++ +R a R a+
  CTQ27897.1 109 QVIeVWNHISPELAVARYASRLAT 132
                 888899999999999999999875 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.6e-06     0.014       4      33 ..      13      42 ..      10      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.6e-06
                EEEEE-TTSSHHHHHHHHHHHSSS-EEEEE CS
         CPT  4 ilLnGgsssGKsslaralqevldepwlhlg 33
                il+nG + sGKs+++r l e++  p l + 
  CTQ27897.1 13 ILINGIPASGKSTITRLLAETFSLPVLTID 42
                99********************99988774 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.7e-05      0.14       2      26 ..      20      44 ..      19      53 .. 0.90
   2 ?    1.1   0.0      0.24   3.9e+02      82     116 ..     102     141 ..      91     169 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.7e-05
                TSSHHHHHHHHHHHHTSEEEEHHHH CS
         SKI  2 GaGKstvGkllAkklglefiDlDel 26
                ++GKst+ +llA++ +l+++ +D +
  CTQ27897.1 20 ASGKSTITRLLAETFSLPVLTIDGI 44
                79******************99965 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.24
                 HH....HHSEEEEEE--HHHHHHHHHHTTS.SGGGCSCHH CS
         SKI  82 lk....ekgiviyLdvsleellerlkadke.RPllqeksk 116
                 l+    e+ i ++ ++s+e  ++r +++   RP  +  ++
  CTQ27897.1 102 LQqagvEQVIEVWNHISPELAVARYASRLAtRPPGHPGEE 141
                 4444447778899999999999999877766998776555 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.7e-05     0.061       4      26 ..      13      35 ..      11      47 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.7e-05
                EEEE--TTSSHHHHHHHHHHHHH CS
       KTI12  4 vvltGlPssGKstrakeLakale 26
                +++ G+P+sGKst+++ La++++
  CTQ27897.1 13 ILINGIPASGKSTITRLLAETFS 35
                899****************9986 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.18      16      49 ..      10      41 ..       3      45 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
  Zeta_toxin 16 PklillgGqpGAGKselaellkdelerqgnvvrl 49
                +++il+ G p++GKs++ +ll++ +     v+++
  CTQ27897.1 10 KTAILINGIPASGKSTITRLLAETF--SLPVLTI 41
                579*****************99987..5555555 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.5e-05      0.15       1      27 [.      13      39 ..      13      44 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.5e-05
                    EEEE-STTSSHHHHHHHHHHHHT-EEE CS
  Cytidylate_kin  1 iaiDGPagsGKssvaralaeklglkyl 27
                    i i G  +sGKs+++r+lae+++l +l
      CTQ27897.1 13 ILINGIPASGKSTITRLLAETFSLPVL 39
                    5688999**************998776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00046      0.75       6      79 ..      11     143 ..       9     187 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00046
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee...................................erpevv.fvtlpsstsskdllrellralglel 68 
                 + +++ G + +GK+t  r l+e++       +                                    +++ v ++++  +  +++ l++ll++ g+e+
  CTQ27897.1  11 TAILINGIPASGKSTITRLLAETFSLPVLTIDgikepfmarlapvdrpmnrqlgcaayeviwsivgaSPASMVwLIDAWFGFQPRETLQRLLQQAGVEQ 109
                 679999****************99533222225666666666666666666666666666666665533343346666666666666666666666555 PP

      AAA_22  69 ka.......................erlsseell 79 
                                          +++  ee+l
  CTQ27897.1 110 VIevwnhispelavaryasrlatrpPGHPGEEYL 143
                 5555555555555555555555555555555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00024      0.39      25      51 ..      11      37 ..       2     180 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
      AAA_16 25 elvllsGesGvGKsslvrellralekd 51
                 ++l+ G +++GKs++ r l++ ++  
  CTQ27897.1 11 TAILINGIPASGKSTITRLLAETFSLP 37
                689*****************9987766 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00031      0.51       2      25 ..      17      40 ..      16      42 .. 0.94
   2 ?   -2.3   0.0       3.3   5.4e+03      85     122 ..      94     104 ..      75     133 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00031
                E-TTSSHHHHHHHHHHHHTEEEEE CS
      AAA_17  2 GgPGsGKgtqceklvekygfthls 25
                G+P sGK+t+ + l+e + +++l+
  CTQ27897.1 17 GIPASGKSTITRLLAETFSLPVLT 40
                9*******************9986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.3
                 TTEEEESSHHHHHHHH..SEEEEEE--HHHHHHHHHHH CS
      AAA_17  85 qagfldglpkevleelkpdaiilleadpeeilerrlkd 122
                 +++ l++l +                           +
  CTQ27897.1  94 PRETLQRLLQ---------------------------Q 104
                 3333333333...........................2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 1577.39
//
Query:       CTQ27898.1  [L=107]
Description: Inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-10   41.2  10.4    1.8e-10   40.8  10.4    1.1  1  AzlD             Branched-chain amino acid transport protein 


Domain annotation for each model (and alignments):
>> AzlD  Branched-chain amino acid transport protein (AzlD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8  10.4     1e-14   1.8e-10       3      99 .]       9     102 ..       7     102 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1e-14
        AzlD   3 laillmalvtyltRylplllfrrlklppwlqrllryvPiavLaaliapellaetgklsaslglarllaalvavlvalltrnlllsilvGmavyallr 99 
                 + i+++ l+tyl+R+ +  l++rl ++++ q ll+ +++ +L  + + + + e+ +++   g+ar+l++++av++a+++  l+++i+++++v+allr
  CTQ27898.1   9 AGIAILSLGTYLMRLGGAKLGNRLAFSERSQALLSDAATVLLFSVALATTFYEGAHFA---GMARVLGVAFAVFLAWRKVPLIGVIIAAAVVTALLR 102
                 5689999********************************************9999988...*********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 915.96
//
Query:       CTQ27899.1  [L=227]
Description: Azaleucine resistance protein AzlC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-27   95.4   8.6    6.2e-27   94.7   8.6    1.3  1  AzlC      AzlC protein
  ------ inclusion threshold ------
        1.6    8.5   2.8        1.9    8.2   1.6    1.7  2  DUF3464   Photosynthesis affected mutant 68
        6.5    7.2   7.3        1.8    9.0   0.6    2.6  3  DUF983    Protein of unknown function (DUF983)


Domain annotation for each model (and alignments):
>> AzlC  AzlC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   8.6     1e-30   6.2e-27       2     136 .]      29     162 ..      28     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 1e-30
        AzlC   2 illgylpvgiafGvlavqaglsvweavlmSllvfAGsaqfaavgllaagasllaivlttllvNlRhllyglslapklkklsrlkrllla.flltDetfa 99 
                 ++l++ +vg+++G lav+ g+++w  +l+S+ v AG+++f+++g++a+g+s+l  +++ llvN+Rh+++g+++++ + +  r+   +++ +++ De+++
  CTQ27899.1  29 VCLAVGVVGMSYGSLAVAYGFPLWVPLLLSVSVLAGASEFMFIGIVASGGSPL--AAAGLLVNARHIPFGVTVRELVGR--RALS-FIGcHIMNDESVV 122
                 799********************************************999765..5689******************43..4444.5556********* PP

        AzlC 100 lasar...klsrayflglglllylawvlgtllGallgsll 136
                 +  ++    +++a ++ +g+ + l+w lgtl Ga++g+ll
  CTQ27899.1 123 FGLSQptpAQRKAAYWLCGAGVALIWPLGTLTGAAVGKLL 162
                 **5444765569*************************986 PP

>> DUF3464  Photosynthesis affected mutant 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.6   0.00032       1.9     100     118 ..      26      44 ..      11      48 .. 0.83
   2 ?   -3.0   0.0       0.9   5.4e+03      92     105 ..      49      62 ..      44      66 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00032
     DUF3464 100 vslvlFglgvlGlsYGvlS 118
                 + lv++++gv+G+sYG l 
  CTQ27899.1  26 IVLVCLAVGVVGMSYGSLA 44 
                 5689************985 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.9
     DUF3464  92 lptwvvllvslvlF 105
                 +p wv+ll s+ ++
  CTQ27899.1  49 FPLWVPLLLSVSVL 62 
                 68888888888766 PP

>> DUF983  Protein of unknown function (DUF983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.6    0.0003       1.8      22      69 ..      19      66 ..      12      71 .. 0.78
   2 ?    1.5   0.0     0.065   3.9e+02      33      82 ..     110     159 ..     107     161 .. 0.83
   3 ?   -1.9   0.2       0.8   4.8e+03      71      71 ..     191     191 ..     172     221 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0003
      DUF983 22 raddgPayfvilivghlvvplallvevayepplwvhlliwlpltllls 69
                  d   a++++++++ +v +    ++vay  plwv ll+ + +++ +s
  CTQ27899.1 19 SGDTIKAIVLVCLAVGVVGMSYGSLAVAYGFPLWVPLLLSVSVLAGAS 66
                55666677777777788888889999*************999988765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.065
      DUF983  33 livghlvvplallvevayepplwvhlliwlpltlllsllllrplKGalva 82 
                 +i +h++    +++ ++   p +  ++ wl  + ++ +++l  l Ga v+
  CTQ27899.1 110 FIGCHIMNDESVVFGLSQPTPAQRKAAYWLCGAGVALIWPLGTLTGAAVG 159
                 566777777777788888889999999**************999999886 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.8
      DUF983  71 l 71 
                  
  CTQ27899.1 191 T 191
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1745.56
//
Query:       CTQ27900.1  [L=200]
Description: conserved hypothetical protein; putative transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-13   48.2   0.0    1.5e-12   47.4   0.0    1.5  1  HTH_3         Helix-turn-helix
    2.8e-11   43.6   0.6      7e-11   42.3   0.6    1.6  1  HTH_31        Helix-turn-helix domain
    1.1e-07   31.5   0.0    1.7e-07   30.8   0.0    1.4  1  Cupin_2       Cupin domain
    2.5e-07   31.0   0.0    4.4e-07   30.2   0.0    1.3  1  HTH_26        Cro/C1-type HTH DNA-binding domain
    5.5e-06   26.3   0.0    1.1e-05   25.4   0.0    1.4  1  HTH_19        Helix-turn-helix domain
    0.00025   20.8   0.1    0.00052   19.8   0.0    1.6  2  HTH_25        Helix-turn-helix domain
    0.00084   19.1   0.4     0.0021   17.8   0.4    1.6  1  HTH_IclR      IclR helix-turn-helix domain
     0.0014   18.5   0.0     0.0026   17.7   0.0    1.4  1  HTH_37        Helix-turn-helix domain
      0.005   16.5   0.0     0.0084   15.7   0.0    1.3  1  Cupin_1       Cupin
      0.005   16.6   0.0     0.0093   15.7   0.0    1.5  1  Cupin_6       Cupin
  ------ inclusion threshold ------
      0.015   15.6   0.3      0.035   14.4   0.1    1.7  1  HTH_Tnp_1     Transposase
      0.017   14.9   0.3      0.033   14.0   0.3    1.5  1  TetR_N        Bacterial regulatory proteins, tetR family
      0.029   13.9   0.1      0.067   12.7   0.1    1.6  1  Sigma70_r4    Sigma-70, region 4
      0.036   13.8   0.7       0.15   11.8   0.2    2.1  2  HTH_38        Helix-turn-helix domain
      0.056   13.1   0.2       0.22   11.2   0.0    1.9  2  CENP-B_N      CENP-B N-terminal DNA-binding domain
      0.057   13.3   0.1       0.12   12.3   0.1    1.5  1  AraC_binding  AraC-like ligand binding domain
      0.066   12.9   0.0       0.13   12.0   0.0    1.6  1  Cupin_3       Protein of unknown function (DUF861)
      0.074   12.9   0.3       0.23   11.3   0.1    1.9  2  HTH_23        Homeodomain-like domain
      0.078   12.8   0.2       0.18   11.6   0.0    1.7  2  LacI          Bacterial regulatory proteins, lacI family


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   1.6e-15   1.5e-12       5      53 ..      34      82 ..      30      84 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 1.6e-15
                HHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  5 RkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53
                R   gls++e+A+++G+ +st+s++E+G  nPsletl+ l+ aL+++++
  CTQ27900.1 34 RARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIPFA 82
                4566******************************************987 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.6   7.4e-14     7e-11       8      57 ..      32      80 ..      27      86 .. 0.91

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 7.4e-14
      HTH_31  8 alReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                + R+r GLs++evA+r+g+ +stls+lE+G   +ps+++l +l+ al+ +
  CTQ27900.1 32 RERARTGLSLAEVARRAGIAKSTLSQLESGNG-NPSLETLWSLCVALDIP 80
                458899**************************.6*************986 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.8e-10   1.7e-07       4      60 ..     130     187 ..     127     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.8e-10
                 EEETTEEEEEECSSSEE.EEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE- CS
     Cupin_2   4 elppGesapshrHpged.effyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNt 60 
                   +pG++  sh Hp    e ++V +G++++ + + + el++Gd++  pa ++H f   
  CTQ27900.1 130 LTQPGADRISHPHPPGSvEHIIVTQGRARVGLTSAPEELGEGDYICYPADQEHVFQAL 187
                 579***99*****76666***********************************99764 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   4.7e-10   4.4e-07       9      61 ..      37      88 ..      32      89 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 4.7e-10
      HTH_26  9 rgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLleye 61
                 g++ +e+ar++gi ++tls l +g   ++sl+tL  +C aL++ ++ Lle++
  CTQ27900.1 37 TGLSLAEVARRAGIAKSTLSQLESGN-GNPSLETLWSLCVALDIPFARLLEPQ 88
                57899********************8.7**********************985 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.1e-08   1.1e-05      12      60 ..      38      85 ..      32      87 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.1e-08
      HTH_19 12 gltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyll 60
                gl+++e+a+r+gi +s +s++E+g+  +ps e+l +++ al+i+  +ll
  CTQ27900.1 38 GLSLAEVARRAGIAKSTLSQLESGNG-NPSLETLWSLCVALDIPFARLL 85
                9***********************98.***************9966665 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   5.5e-07   0.00052       2      34 ..      30      62 ..      29      65 .. 0.94
   2 ?   -3.3   0.0         9   8.5e+03      24      34 ..     181     191 ..     180     195 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.5e-07
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT- CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEedd 34
                L ++R + glsl eva++  I+k++l +lE+++
  CTQ27900.1 30 LVRERARTGLSLAEVARRAGIAKSTLSQLESGN 62
                6789**************************986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9
                 HHHHHHHHCT- CS
      HTH_25  24 kdylealEedd 34 
                 +++ +alE d 
  CTQ27900.1 181 EHVFQALEPDT 191
                 57778999775 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.4   2.2e-06    0.0021      14      37 ..      34      57 ..      33      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.2e-06
                TTBSS-BHHHHHHHHTS-HHHHHH CS
    HTH_IclR 14 eapqeltlselArrtglpkStvhR 37
                +a+ +l+l+e+Arr+g++kSt + 
  CTQ27900.1 34 RARTGLSLAEVARRAGIAKSTLSQ 57
                78999****************876 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.7e-06    0.0026      19      72 ..      26      78 ..      15      79 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.7e-06
                HHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTT CS
      HTH_37 19 lalaiaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalG 72
                +a+ + + +++ +ls +e+a++ gia++ +s+l+ g+  + sl++L +l +al+
  CTQ27900.1 26 IAKSLVRERARTGLSLAEVARRAGIAKSTLSQLESGN-GNPSLETLWSLCVALD 78
                56668899999***********************866.5679999999888876 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.9e-06    0.0084      39     109 ..     130     195 ..     125     200 .] 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.9e-06
                 EE.TTEEEEEEEE.SSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEES.SSSEEE CS
     Cupin_1  39 dlepgglllPhyh.pnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqynsg.depava 109
                  ++pg+ +  h h p + e ++v+qG++rvg+++  +       +l eGd +  Pa   h++++ + d++a+ 
  CTQ27900.1 130 LTQPGADRISHPHpPGSVEHIIVTQGRARVGLTSAPE-------ELGEGDYICYPADQEHVFQALEpDTQALL 195
                 458999999999967889***************9997.......9*******************964444444 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.9e-06    0.0093      31      79 ..     144     191 ..     113     199 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.9e-06
     Cupin_6  31 paglalhvvlrGscwlidpasgepvrLsagdvvllpggephvla.dspgt 79 
                 p++++ ++v++G++++ +++  +p +L++gd + +p +++hv++  +p+t
  CTQ27900.1 144 PGSVEHIIVTQGRARVGLTS--APEELGEGDYICYPADQEHVFQaLEPDT 191
                 4448999**********888..8********************4133443 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   3.7e-05     0.035      14      42 ..      29      57 ..      26      61 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.7e-05
   HTH_Tnp_1 14 riVreslepgksvsevArrhgvspnqLyk 42
                ++Vre   +g s +evArr g+ +++L++
  CTQ27900.1 29 SLVRERARTGLSLAEVARRAGIAKSTLSQ 57
                589************************87 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3   3.5e-05     0.033       5      33 ..      27      55 ..      23      57 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.5e-05
                HHHHHHHHHTTT--HHHHHHHHTSSHHHH CS
      TetR_N  5 ArelfaerGydattvreIAkrAGvskgal 33
                A  l  er   +++++e+A+rAG++k++l
  CTQ27900.1 27 AKSLVRERARTGLSLAEVARRAGIAKSTL 55
                6667778888899**************98 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   7.1e-05     0.067      14      42 ..      32      60 ..      27      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.1e-05
                HHHHTTT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4 14 elrfgeglTleEIgerlgiSrerVrqiek 42
                + r   gl+l+E+++r gi +++ +q+e+
  CTQ27900.1 32 RERARTGLSLAEVARRAGIAKSTLSQLES 60
                5566789********************96 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.1     1e+03      13      32 ..       9      32 ..       7      35 .. 0.62
   2 ?   11.8   0.2   0.00016      0.15      19      38 ..      37      56 ..      30      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.1
      HTH_38 13 IerllaeGlslr....eIArrLgr 32
                I r  ++G ++      IA+ L r
  CTQ27900.1  9 IVRYKKQGAGMTqpisVIAKSLVR 32
                666666666655446688888766 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00016
      HTH_38 19 eGlslreIArrLgrspsTIs 38
                 Glsl+e+Arr g ++sT s
  CTQ27900.1 37 TGLSLAEVARRAGIAKSTLS 56
                79****************87 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00023      0.22      23      41 ..      38      57 ..      28      59 .. 0.83
   2 ?   -1.2   0.0       1.7   1.6e+03      12      25 ..      91     104 ..      89     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00023
                T.-HHHHHHHHT--CCHHHH CS
    CENP-B_N 23 e.Skaelarrfnvpestlsd 41
                  S ae+arr ++ +stls+
  CTQ27900.1 38 GlSLAEVARRAGIAKSTLSQ 57
                4499**************98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.7
                 HHHHHHHHHCTT-H CS
    CENP-B_N  12 KievIqrleegeSk 25 
                 K +vI+r e ++ +
  CTQ27900.1  91 KTQVIRRGEGTKVV 104
                 8999*999988755 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00012      0.12      17      64 ..     140     187 ..     126     196 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
                   EEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE- CS
  AraC_binding  17 pphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesd 64 
                    ph ++  + ++vt+G++r+ l     +lg+Gd +  p ++ H +++ 
    CTQ27900.1 140 HPHPPGSVEHIIVTQGRARVGLTSAPEELGEGDYICYPADQEHVFQAL 187
                   3788889999*********************************98875 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00014      0.13      27      66 ..     148     186 ..     120     192 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
                 EEEEEEECEEEEEETTTEEEEEETTEEEEE-TTEEECCCE CS
     Cupin_3  27 EfcyileGevkvtpeggetvelraGDlvvlpkglsgtwdv 66 
                 E++ + +G+ +v    +++ el++GD++ +p++ + + ++
  CTQ27900.1 148 EHIIVTQGRARVGL-TSAPEELGEGDYICYPADQEHVFQA 186
                 888999********.*****************98766655 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00025      0.23      12      37 ..      32      58 ..      25      62 .. 0.83
   2 ?   -2.1   0.0       4.1   3.8e+03       5      16 ..     107     118 ..     105     124 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
      HTH_23 12 lllae.GlsvreIAreLgvsrrTvyrw 37
                +  a+ Gls +e+Ar+ g+ ++T+++ 
  CTQ27900.1 32 RERARtGLSLAEVARRAGIAKSTLSQL 58
                445558*****************9875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.1
      HTH_23   5 reRlrillllae 16 
                 +  ++++ll+a 
  CTQ27900.1 107 QANYQAILLAAC 118
                 667899999885 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00019      0.18       2      19 ..      41      58 ..      40      69 .. 0.84
   2 ?   -3.4   0.1       9.2   8.7e+03      37      43 ..     104     110 ..     102     111 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
                HHHHHHHCTS-HHHHHHH CS
        LacI  2 ikDVArlAGVSkaTVSrv 19
                + +VAr+AG  k+T S+ 
  CTQ27900.1 41 LAEVARRAGIAKSTLSQL 58
                789************985 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.2
                 HHHHTTB CS
        LacI  37 ameelnY 43 
                 ++e+ nY
  CTQ27900.1 104 VAEQANY 110
                 4556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1625.66
//
Query:       CTQ27901.1  [L=331]
Description: HTH-type transcriptional regulator RafR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-54  184.2   0.0      4e-54  183.9   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    1.9e-14   54.4   0.4    3.6e-14   53.4   0.4    1.5  1  Peripla_BP_3  Periplasmic binding protein-like domain
      2e-12   46.7   0.1    4.1e-12   45.7   0.1    1.5  1  LacI          Bacterial regulatory proteins, lacI family
     0.0001   22.3   0.0    0.00036   20.5   0.1    1.9  1  HTH_3         Helix-turn-helix
    0.00011   21.9   0.0    0.00021   21.0   0.0    1.5  2  Peripla_BP_4  Periplasmic binding protein domain
    0.00032   20.1   0.0    0.00091   18.6   0.0    1.8  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
    0.00065   19.4   0.0     0.0018   18.0   0.0    1.8  1  HTH_23        Homeodomain-like domain
     0.0016   18.1   2.1     0.0026   17.5   0.1    2.5  3  HTH_38        Helix-turn-helix domain
     0.0017   18.2   0.4      0.015   15.2   0.3    2.7  2  HTH_11        HTH domain
     0.0019   17.7   0.4     0.0086   15.6   0.1    2.3  2  HTH_24        Winged helix-turn-helix DNA-binding
     0.0058   16.6   0.1          1    9.4   0.0    2.7  2  HTH_Crp_2     Crp-like helix-turn-helix domain
     0.0092   15.8   0.1       0.11   12.3   0.0    2.4  2  HTH_10        HTH DNA binding domain
  ------ inclusion threshold ------
      0.013   15.2   0.1      0.042   13.5   0.1    1.9  1  Sigma70_r4_2  Sigma-70, region 4
       0.02   14.9   0.0      0.065   13.3   0.0    1.9  1  HTH_7         Helix-turn-helix domain of resolvase
      0.022   14.9   0.0      0.076   13.1   0.0    2.0  1  HTH_28        Helix-turn-helix domain
      0.033   14.1   0.1      0.066   13.1   0.1    1.4  1  DUF3465       Protein of unknown function (DUF3465)
      0.034   14.1   0.0      0.081   12.9   0.0    1.7  1  HTH_36        Helix-turn-helix domain
      0.037   13.9   0.2        2.7    8.0   0.0    2.9  2  MarR_2        MarR family
      0.051   13.6   0.4        0.2   11.7   0.0    2.2  2  HTH_29        Winged helix-turn helix
      0.062   13.1   0.1        0.2   11.5   0.1    1.9  1  HTH_IclR      IclR helix-turn-helix domain
      0.067   12.9   0.0       0.24   11.1   0.0    2.0  1  Crp           Bacterial regulatory proteins, crp family
      0.075   12.7   0.1       0.43   10.3   0.0    2.2  2  GntR          Bacterial regulatory proteins, gntR family
      0.097   12.5   0.2       0.89    9.4   0.0    2.3  2  HTH_8         Bacterial regulatory protein, Fis family
       0.13   12.6   3.8       0.18   12.2   0.1    3.1  3  HTH_31        Helix-turn-helix domain
       0.13   11.8   0.1       0.28   10.8   0.1    1.5  1  HTH_50        Helix-turn-helix domain
       0.18   11.4   0.1       0.36   10.4   0.1    1.5  1  GerE          Bacterial regulatory proteins, luxR family
       0.52   10.5   2.1        1.1    9.4   0.2    2.6  2  DUF4148       Domain of unknown function (DUF4148)


Domain annotation for each model (and alignments):
>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.9   0.0     6e-57     4e-54       3     260 ..      60     310 ..      58     330 .. 0.94

  Alignments for each domain:
  == domain 1  score: 183.9 bits;  conditional E-value: 6e-57
                   EEEEEES-TTSHH....HHHHHHHHHHHHHHHTEEEEEEE-SSHHHHHHHHHHHHHTT-SEEEEE.-S-GGHHHHHHHHHHT-EEEEESS--B-TTT CS
  Peripla_BP_1   3 klglvlpqldePf....fldlvkgitkaakehgvdvlllaageeedlakaidllkakgidgliia.tsdtsfdditakaesgipvialedaidapdg 94 
                   ++glv p   +P     fl++v  i+ ++++h++d+ll+a++e++d + +++ ++ +++d+li+a t+d++ +++ + ++sg p++al++   a   
    CTQ27901.1  60 AVGLVFPVRPAPLnnnvFLEMVGEISHELARHDIDLLLIADDEQADKHGYMRMVQGRRVDALIVAhTLDDD-PRLAQLQASGFPFLALGRSRLAQ-- 153
                   78999999988888888************************************************99**99.*******************8888.. PP

                   S-EEEE-.HHHHHH.HHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-S CS
  Peripla_BP_1  95 vPcvipd.dtqage.estqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaivai 187
                    P +++d d+ ag+ ++t++Li++gh+r iall++++++    +r++G+l+al+eaGl   d +++++  +++++++a  ell+ +  P+  ai+++
    CTQ27901.1 154 -PYAWFDfDNYAGTcRATRHLIQQGHQR-IALLGENNNQAFILQRRNGYLDALREAGL--SDAWLRSVPATRRGGYQATLELLRLPepPT--AIITD 244
                   .***************************.*****************************..*************************99999..***** PP

                   SHHHHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH- CS
  Peripla_BP_1 188 ndeaalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkin 260
                    ++ ++Ga++al   Grl + + v     ++vvydgL  +qd+i+e +++aviq++r+ +Gr+++dmv   i 
    CTQ27901.1 245 CNTHGDGAAMALAHLGRLTGDNRV-----ALVVYDGL--PQDSIIETDVAAVIQSTRQGVGRQIADMVRRLIA 310
                   ************************.....********..*****************************99993 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.4   5.4e-17   3.6e-14       1     165 [.     170     330 ..     170     331 .] 0.86

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 5.4e-17
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEESSCCHHHHHHHHHCCTT CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPtAviaasDelAlgvlqalreag 97 
                   ++hL+++Gh+ria++g  + +++ ++ +r+ g+ +al+e+gl  ++ +  +++  ++  a   l    l l ++PtA+i     +  g+  al++ g
    CTQ27901.1 170 TRHLIQQGHQRIALLG--ENNNQAFILQRRNGYLDALREAGLSDAWLRSVPATRRGGYQATLEL----LRLPEPPTAIITDCNTHGDGAAMALAHLG 260
                   68**************..99999**********************9999888776555555544....2344499*****99999999999999999 PP

                   --TT.TTEEEEBSS--SCCCSSSS--E.EEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GG CS
  Peripla_BP_3  98 lrvP.edlsvigfddselaalssPplT.tvrqpleelGraaaellldllegekappeqvllppelveReS 165
                        ++++++ +d+ +  ++    +  ++    +++Gr++a+++ +l++ge+ ++ qvl  pe+ ++e+
    CTQ27901.1 261 RLTGdNRVALVVYDGLPQDSIIETDVAaVIQSTRQGVGRQIADMVRRLIAGEDLATLQVLWQPEFFPGET 330
                   9999889********9999999998861555556689**********************97777888776 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.1   6.2e-15   4.1e-12       2      46 .]       3      47 ..       2      47 .. 0.97

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 6.2e-15
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                +k +A++ G S++TVSr Ln+ + Vs+etr rVea ++  +Y+Pn
  CTQ27901.1  3 LKAIAKQLGISVTTVSRALNGYDDVSQETRARVEAEAQRRGYRPN 47
                899*****************************************9 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   5.4e-07   0.00036      10      40 ..       1      31 [.       1      34 [. 0.96

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5.4e-07
                HHHHHHHHHHTSSHHHHHHHHTTSSCSBHHH CS
       HTH_3 10 lsqeeLAeklGvsrstisriEnGernPslet 40
                +s++ +A+ lG+s++t+sr  nG+   s+et
  CTQ27901.1  1 MSLKAIAKQLGISVTTVSRALNGYDDVSQET 31
                799*************************997 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       7.9   5.2e+03      76      95 ..       7      25 ..       3      35 .. 0.56
   2 !   21.0   0.0   3.2e-07   0.00021      56     258 .]     118     313 ..      98     313 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7.9
                  HHHTT-EEEEESTTGCTTT- CS
  Peripla_BP_4 76 akaaGIpVvafdsddapsge 95
                  ak+ GI V ++ ++  ++++
    CTQ27901.1  7 AKQLGISVTTVSRA-LNGYD 25
                  45556666665555.44333 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 3.2e-07
                   -SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH- CS
  Peripla_BP_4  56 vdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkey 152
                   vd++iva +  +  +  l++++a G p+ a  +    + ++++   fdn+a    + + l ++  ++   +++l  + +++   +r +g  ++l+e 
    CTQ27901.1 118 VDALIVAHTLDDDPR--LAQLQASGFPFLALGRS-RLAQPYAW-FDFDNYAGTCRATRHLIQQGHQR---IALLGENNNQAFILQRRNGYLDALRE- 206
                   777777766665544..88888888888888888.44555554.58999999999999999999966...99998888888889************. PP

                   TTCEECCEEE.STTTCHHHHHHHHHHHHH.TTTECEEEESSCCHHHCHHHHHHHTTT...TSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHH CS
  Peripla_BP_4 153 pgikivaeva.ganwdaekaqqaleallt.anpldgilaandgmaegalealeaagl...agkvvvtgqDatpealeaikdGtidatvaqdpyelgy 244
                    g+         +  ++  ++qa+ +ll+ ++p  +i++ +++ + ga+ al+  g+   +++v+++ +D+ p+  ++i + ++ a + +  +++g+
    CTQ27901.1 207 AGLSDAW--LrSVPATRRGGYQATLELLRlPEPPTAIITDCNTHGDGAAMALAHLGRltgDNRVALVVYDGLPQ--DSIIETDVAAVIQSTRQGVGR 299
                   2222222..1234689**************99889*****9***************995444455888888886..9*******988888888**** PP

                   HHHHHHHHHHTT-- CS
  Peripla_BP_4 245 aavelavallkGkk 258
                   ++++++++l++G++
    CTQ27901.1 300 QIADMVRRLIAGED 313
                   **********9985 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.4e-06   0.00091      27      49 ..       1      22 [.       1      24 [. 0.92

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.4e-06
  HTH_Tnp_ISL3 27 srsvkavArqlgvSwtTVwrild 49
                  + s ka+A+qlg+S tTV r+l+
    CTQ27901.1  1 M-SLKAIAKQLGISVTTVSRALN 22
                  4.99****************986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.8e-06    0.0018      19      41 ..       2      24 ..       1      37 [. 0.88

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.8e-06
      HTH_23 19 svreIAreLgvsrrTvyrwlkry 41
                s ++IA++Lg+s  Tv+r l+ y
  CTQ27901.1  2 SLKAIAKQLGISVTTVSRALNGY 24
                889*****************998 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   3.9e-06    0.0026      21      41 ..       1      21 [.       1      22 [. 0.95
   2 ?   -2.9   0.1       9.2   6.1e+03      37      44 .]      84      91 ..      84      91 .. 0.88
   3 ?   -2.6   0.1       7.2   4.8e+03      10      18 ..     171     179 ..     170     180 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.9e-06
      HTH_38 21 lslreIArrLgrspsTIsREl 41
                +sl++IA++Lg s +T+sR l
  CTQ27901.1  1 MSLKAIAKQLGISVTTVSRAL 21
                8******************87 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 9.2
      HTH_38 37 IsRElkRn 44
                Is El R+
  CTQ27901.1 84 ISHELARH 91
                899*9996 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 7.2
      HTH_38  10 ReeIerlla 18 
                 R+ I+++++
  CTQ27901.1 171 RHLIQQGHQ 179
                 899999997 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.3   2.2e-05     0.015      17      55 .]       2      45 ..       1      45 [. 0.82
   2 ?   -2.2   0.0       6.1   4.1e+03      35      54 ..     200     225 ..     192     226 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.2e-05
      HTH_11 17 sgeeLAeeLnvSrrtvrrdIkaLeelg....vpIesepgr.GYr 55
                s + +A++L++S +tv r +    +      +++e+e++r GYr
  CTQ27901.1  2 SLKAIAKQLGISVTTVSRALNGYDDVSqetrARVEAEAQRrGYR 45
                8899***************9755555555569999999999997 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.1
      HTH_11  35 dIkaLeelg......vpIesepgrGY 54 
                 +++aL+e+g        + ++++ GY
  CTQ27901.1 200 YLDALREAGlsdawlRSVPATRRGGY 225
                 56777777765533333444444466 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.3e-05    0.0086      18      39 ..       1      22 [.       1      22 [. 0.92
   2 ?   -2.8   0.0       7.4   4.9e+03      12      21 ..     127     136 ..     126     138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-05
      HTH_24 18 isqreLAerlglSpstvnrrlk 39
                +s + +A++lg+S++tv+r l+
  CTQ27901.1  1 MSLKAIAKQLGISVTTVSRALN 22
                6889***************985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.4
      HTH_24  12 Lqknprisqr 21 
                 L ++pr+ q 
  CTQ27901.1 127 LDDDPRLAQL 136
                 889***9885 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0015         1      23      43 ..       2      22 ..       1      24 [. 0.89
   2 ?    4.3   0.0      0.06        40      25      48 ..     284     307 ..     266     316 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0015
                HHHHHHHHTTSSHHHHHHHHH CS
   HTH_Crp_2 23 tqeelAsmlGltretvsrils 43
                + + +A  lG++  tvsr+l+
  CTQ27901.1  2 SLKAIAKQLGISVTTVSRALN 22
                66789**************97 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.06
                 HHHHHHTTSSHHHHHHHHHHHHHT CS
   HTH_Crp_2  25 eelAsmlGltretvsrilseLkre 48 
                 ++ A+ + +tr+ v r ++++ r+
  CTQ27901.1 284 TDVAAVIQSTRQGVGRQIADMVRR 307
                 689*****************9886 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00017      0.11      25      45 ..       2      22 ..       1      23 [. 0.91
   2 ?    0.5   0.0      0.81   5.3e+02      13      28 ..     196     211 ..     184     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00017
      HTH_10 25 tlkeLAkelGIskstlsehLr 45
                +lk++Ak+lGIs +t+s  L+
  CTQ27901.1  2 SLKAIAKQLGISVTTVSRALN 22
                799*************99885 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.81
      HTH_10  13 yemGYFdyPRrvtlke 28 
                  ++GY d  R++ l++
  CTQ27901.1 196 RRNGYLDALREAGLSD 211
                 589*****99999875 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   6.3e-05     0.042      27      47 ..       1      21 [.       1      22 [. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.3e-05
                  --HHHHHHHHT--HHHHHHHH CS
  Sigma70_r4_2 27 lsykEIAellgisegtVksrl 47
                  +s k IA++lgis++tV ++l
    CTQ27901.1  1 MSLKAIAKQLGISVTTVSRAL 21
                  799**************8876 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   9.8e-05     0.065      22      43 ..       1      22 [.       1      23 [. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.8e-05
                --STTTSSSS---SSSS--SS- CS
       HTH_7 22 isiskIAkevnisRsTvYRyla 43
                +s ++IAk+++is++Tv R l+
  CTQ27901.1  1 MSLKAIAKQLGISVTTVSRALN 22
                6789*************88776 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00012     0.076      14      37 ..       2      25 ..       1      26 [. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00012
      HTH_28 14 svreaArelgisrrtvyrWikrye 37
                s +++A++lgis +tv+r ++ y+
  CTQ27901.1  2 SLKAIAKQLGISVTTVSRALNGYD 25
                889*****************9985 PP

>> DUF3465  Protein of unknown function (DUF3465)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   9.9e-05     0.066      43      83 ..      97     138 ..      74     141 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.9e-05
     DUF3465  43 vladdtkgsrHqrF.ilrlesgqtiliahniDlAPrledlkk 83 
                 ++add+++ +H++  +++ +   ++ +ah +D  Prl++l++
  CTQ27901.1  97 LIADDEQADKHGYMrMVQGRRVDALIVAHTLDDDPRLAQLQA 138
                 459*********973455566678999************996 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00012     0.081      27      47 ..       2      22 ..       1      23 [. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
      HTH_36 27 sqetlakrlglsknTvsraik 47
                s + +ak+lg+s+ Tvsra++
  CTQ27901.1  2 SLKAIAKQLGISVTTVSRALN 22
                6788***************98 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0     0.004       2.7      23      43 ..       2      22 ..       1      25 [. 0.90
   2 ?    2.9   0.1      0.16     1e+02      25      47 ..     284     306 ..     251     307 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.004
                EHHHHHHHHTSSHHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsrilk 43
                + +++a+ lg+s  +vsr+l+
  CTQ27901.1  2 SLKAIAKQLGISVTTVSRALN 22
                5689***************98 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
                 HHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2  25 gelarrlglsksavsrilkrLva 47 
                 +++a+  + +++ v r ++++v+
  CTQ27901.1 284 TDVAAVIQSTRQGVGRQIADMVR 306
                 6899999*************997 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00031       0.2      15      37 ..       3      25 ..       1      47 [. 0.85
   2 ?   -1.7   0.1       4.6     3e+03       4      23 ..     289     306 ..     287     308 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00031
      HTH_29 15 vsqiAkllglsrrtvyrwlkrfe 37
                 + iAk+lg+s +tv r+l+ ++
  CTQ27901.1  3 LKAIAKQLGISVTTVSRALNGYD 25
                689***************99776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.6
      HTH_29   4 allllaeGvstvsqiAkllg 23 
                 +++  ++Gv+  +qiA +++
  CTQ27901.1 289 VIQSTRQGVG--RQIADMVR 306
                 6666678886..88888875 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1    0.0003       0.2      19      40 ..       1      22 [.       1      23 [. 0.94

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0003
                -BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 19 ltlselArrtglpkStvhRlLq 40
                ++l+ +A+++g++ +tv+R L+
  CTQ27901.1  1 MSLKAIAKQLGISVTTVSRALN 22
                89*****************986 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00036      0.24       3      23 ..       1      21 [.       1      22 [. 0.93

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00036
                --HHHHHHHHTS-HHHHHHHH CS
         Crp  3 mSRqdIAdylGlTrETVSRlL 23
                mS  +IA+ lG ++ TVSR L
  CTQ27901.1  1 MSLKAIAKQLGISVTTVSRAL 21
                88899**************87 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00064      0.43      26      46 ..       2      22 ..       1      23 [. 0.92
   2 ?   -0.9   0.0         2   1.3e+03       3      24 ..     299     320 ..     298     321 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00064
                -HHHHHHHHTS-HHHHHHHHH CS
        GntR 26 sereLaaefgVsrttvReALr 46
                s +++a+++g+s ttv +AL+
  CTQ27901.1  2 SLKAIAKQLGISVTTVSRALN 22
                5789***************97 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2
                 HHHHHHHHHHHHTTSS-TTSB- CS
        GntR   3 eqvyerLredIlsgelrpGdkL 24 
                 +q+++++r++I    l+  + L
  CTQ27901.1 299 RQIADMVRRLIAGEDLATLQVL 320
                 6899******999888876665 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0013      0.89      22      40 ..       4      22 ..       2      24 .. 0.87
   2 ?    0.4   0.0      0.88   5.8e+02      29      40 ..      43      54 ..      35      55 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0013
                HHHHHHHTS-HHHHHHHHH CS
       HTH_8 22 skAArlLGisRrtLyrKLk 40
                ++ A+ LGis +t+ r L 
  CTQ27901.1  4 KAIAKQLGISVTTVSRALN 22
                677*************996 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.88
                TS-HHHHHHHHH CS
       HTH_8 29 GisRrtLyrKLk 40
                G  ++t+ r+Lk
  CTQ27901.1 43 GYRPNTFARRLK 54
                7889*******8 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00027      0.18      15      49 ..       1      34 [.       1      46 [. 0.86
   2 ?   -2.3   0.1       9.1   6.1e+03      42      61 ..     113     132 ..     110     135 .. 0.72
   3 ?   -0.5   0.1       2.5   1.7e+03      22      34 ..     205     217 ..     200     234 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00027
      HTH_31 15 LsqeevAerlgvsestlsrlEqGrrgrpspavlea 49
                +s+++ A++lg+s++t+sr  +G  + +s ++ ++
  CTQ27901.1  1 MSLKAIAKQLGISVTTVSRALNGYDD-VSQETRAR 34
                68999******************997.87765554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 9.1
      HTH_31  42 pspavlealaralgldpaer 61 
                 ++ + ++al  a+ ld++ r
  CTQ27901.1 113 VQGRRVDALIVAHTLDDDPR 132
                 56677888888888888766 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.5
      HTH_31  22 erlgvsestlsrl 34 
                 + +g+s ++l+ +
  CTQ27901.1 205 REAGLSDAWLRSV 217
                 6789999999876 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00042      0.28      25      48 ..       2      25 ..       1      25 [. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00042
      HTH_50 25 StRklAkrLGvShtaianklrkYg 48
                S   +Ak+LG+S t++ + l  Y+
  CTQ27901.1  2 SLKAIAKQLGISVTTVSRALNGYD 25
                66779***********99888775 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00054      0.36      19      35 ..       2      18 ..       1      22 [. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00054
                -HHHHHHHHTS-HHHHH CS
        GerE 19 snkeIAeelniSekTVk 35
                s k IA++l+iS +TV+
  CTQ27901.1  2 SLKAIAKQLGISVTTVS 18
                6799************8 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2    0.0017       1.1      21      48 ..      16      47 ..       1      51 [. 0.71
   2 ?   -1.8   0.0       5.6   3.7e+03      37      45 ..     133     141 ..     133     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0017
     DUF4148 21 a.......ahskspkTRAqVraELaqaeaaGylps 48
                +        ++ s+ TRA V aE   a++ Gy+p+
  CTQ27901.1 16 TvsralngYDDVSQETRARVEAE---AQRRGYRPN 47
                3445566888899********98...677888775 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.6
     DUF4148  37 LaqaeaaGy 45 
                 Laq++a G+
  CTQ27901.1 133 LAQLQASGF 141
                 89****995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 2763.98
//
Query:       CTQ27902.1  [L=707]
Description: Alpha-galactosidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.5e-118  394.5   0.0   4.5e-118  394.2   0.0    1.1  1  Melibiase        Melibiase
      4e-43  147.8   0.0    8.9e-43  146.7   0.0    1.5  2  Glyco_hydro_36N  Glycosyl hydrolase family 36 N-terminal doma
    1.5e-09   38.2   0.0    3.1e-09   37.2   0.0    1.5  1  Glyco_hydro_36C  Glycosyl hydrolase family 36 C-terminal doma
  ------ inclusion threshold ------
      0.033   13.3   0.0      0.068   12.3   0.0    1.4  1  Melibiase_2      Alpha galactosidase A


Domain annotation for each model (and alignments):
>> Melibiase  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.2   0.0    1e-121  4.5e-118       3     347 .]     255     592 ..     253     592 .. 0.97

  Alignments for each domain:
  == domain 1  score: 394.2 bits;  conditional E-value: 1e-121
   Melibiase   3 qtPevvlvysdkGlnelsqkfhelvrerlvkskfaekerPvllnsWeavyfdfnedklkeladeaaklGielfvlDDGWfgkrnddnssLGDWfvneek 101
                  tP + ++ys +Gln++sq+fh+++rer+++    +k rPv ln+We++yfd++ d + ++adeaa+lG+e+f++DDGWf  rndd ++LGDW  +e+k
  CTQ27902.1 255 WTPYLYASYSANGLNGMSQQFHRYLRERIIRF-PGNKPRPVHLNTWEGIYFDHDPDYIMRMADEAAALGVERFIIDDGWFKGRNDDWAALGDWYLDEKK 352
                 69**************************8875.6899************************************************************** PP

   Melibiase 102 lpdgleelakevhekglkfGlWvePemvsadselyrehPdwvlqvedrsrtesrnqlvLdlsrpdvvdyiievldnllkeaqidyvkWDmnrhlteigs 200
                 +p gl++++++v+++g++fG+WvePem+++ds+lyr+hPdwvl  ++++++++r+q+vL+l  p+++dy++e ++ ll e+ +dyvkWDmnr+l + g+
  CTQ27902.1 353 YPYGLTPVIDHVKSLGMEFGIWVEPEMINPDSDLYRAHPDWVLALPGYTPLTGRHQFVLNLNIPEAFDYLLERMSWLLGEHAVDYVKWDMNRELVQPGH 451
                 ************************************************************************************************998 PP

   Melibiase 201 saldaerqrevahryvlglydilerlttkfpkvlfesCssGGgrfDlGlleyvpqiWtsDntDaverlkiqygtslvyPisalgahvsavPneqtgrat 299
                 +         +a +++   y++l++l  +fp+++fesCssGGgr+D  +l+   + W+sDn+Da+er +iq+g+s+ +P+ ++gah++    + t r+ 
  CTQ27902.1 452 QGRA------AADAQTRQFYRLLDTLVARFPHIEFESCSSGGGRIDYEVLKRSHRFWASDNNDALERNTIQRGMSYFFPPEVMGAHIGNRHCHATFRQH 544
                 8776......556777789******************************************************************************** PP

   Melibiase 300 slelraavallGslGleldlaklseeekqavkkqvakykkvrelvlkg 347
                 s+++r+  al+G++Gleld+ +  eee++  +k  a +k+ r+++  g
  CTQ27902.1 545 SIAFRGLTALFGHMGLELDPVSADEEERAGYRKYAALHKQWRDVIHHG 592
                 *******************************************99875 PP

>> Glyco_hydro_36N  Glycosyl hydrolase family 36 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.7   0.0     2e-46   8.9e-43       4     241 ..      24     236 ..      22     249 .. 0.90
   2 ?   -3.1   0.0         1   4.6e+03      47      94 ..     514     555 ..     503     571 .. 0.72

  Alignments for each domain:
  == domain 1  score: 146.7 bits;  conditional E-value: 2e-46
                      EEEEEEE--S-----...TTS--S...TTT.-TT--CCCS-BSS-BTTSS--S--SEEEE-TTS.-----EEEEEEEEEES----TTS-----S CS
  Glyco_hydro_36N   4 ehlYwGkklsdteeredlsfaplsalakasrdrglsldtlpqeyptsgkgdyrepaleirradG.srstdfrytsheiyegkpelegLPatyae 96 
                      e++YwG++ls+      +s++++++l++  ++ +l +d+  + + + g+g ++ p++e++r +G + s+ f+  +++  eg             
       CTQ27902.1  24 EIVYWGPHLSH------FSPQDADSLTRPVANGRLDVDSPVTLMAELGHGLFGAPGIEGHR-QGlDASPLFTTSEVRH-EG------------- 96 
                      689******44......45555554445555557778888888******************.8879999999999986.44............. PP

                      GEEEEEEEEEETTTTEEEEEEEEEECCCTEEEEEEEEEE-SSS-EEEEEEEEEEEEESS--EEEEEEEEETTEEEEEEEEE--CEEEEEE--SS CS
  Glyco_hydro_36N  97 eaetleitlkDevagleltlsytvfeesdvitrsarltnegeepleleklasasldlpdadyellsltGaWarErqiqrrplthGkqsiesrrG 190
                        +tl+++ +D++agl+l+ ++ + ++s+v+  +  +tn  ++p ++++la + l++ ++  e++ ++G+W+rE+q++r  l+h ++++e+rrG
       CTQ27902.1  97 --QTLTLVSEDPQAGLRLQSEIAL-DASGVLSVRHGVTNLRASPWQVDRLAVT-LPVAERAREVMAFHGRWIREFQPHRLTLEHDSFVLENRRG 186
                      ..9*********************.*************************999.***97777******************************** PP

                      SS-SSBESEEEEEETT--SSSB-EEEEEES-SSSEEEEEEE-TTS-EEEEE CS
  Glyco_hydro_36N 191 rsshqanpflalgepgtteesGevygfslvYSGNfraqaerdqfgkvrvlm 241
                      r+sh++ p l+ g++ ++e +Gev+g++l++SGN+r++ae++++g+ r+l 
       CTQ27902.1 187 RTSHEHFPALITGSRAFSEMQGEVWGVHLAWSGNHRLRAEVKTDGR-RYLQ 236
                      ********************************************99.8776 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1
                      S-BTTSS--S--SEEEE-TTS-----EEEEEEEEEES----TTS---- CS
  Glyco_hydro_36N  47 yptsgkgdyrepaleirradGsrstdfrytsheiyegkpelegLPaty 94 
                        + g + +  p + + +  G+r ++ ++++h i      ++gL a +
       CTQ27902.1 514 TIQRGMSYFFPPEVMGAH-IGNRHCHATFRQHSIA-----FRGLTALF 555
                      556677778888888888.8999999999999983.....44555555 PP

>> Glyco_hydro_36C  Glycosyl hydrolase family 36 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0     7e-13   3.1e-09       3      66 ..     606     693 ..     604     702 .. 0.92

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 7e-13
                      EEEEE-TTSSEEEEEEEESS--SS---EEE---S--TTSEEEE.............................EEEHHHHHHT-EEE-- CS
  Glyco_hydro_36C   3 awmyvseDkseavvfyfqvlarpnaalrrlklkGLdpdkkYrv........................eeegktysGdeLmnaGLnlpl 66 
                      a+ +vs+Dk +a++++ q+     + + +l+l+GL++ ++Y+v                         ++ +t+sG+ L +aGL lp 
       CTQ27902.1 606 AHGVVSPDKAQAIFLVSQLAMPDYTLMAPLRLAGLEASARYQVtlldhpniqitgegghtmrklpawMTTPQTVSGEWLQQAGLALPI 693
                      6679***************999999******************************************55778**************97 PP

>> Melibiase_2  Alpha galactosidase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.5e-05     0.068      43      97 ..     318     375 ..     307     379 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.5e-05
                  HHHHT--EEE--SS-B-SS--TT...S---B-TTTSTTHHHHHHHHHHHTT-EEEEEE CS
  Melibiase_2  43 ykdlgyeyviiddcwlakerdke...grlqadpkrfpsgikkladyvhskglklgiya 97 
                     lg e  iidd w   + d+    g  + d+k++p g+  + d+v+s g+ +gi+ 
   CTQ27902.1 318 AAALGVERFIIDDGWFKGRNDDWaalGDWYLDEKKYPYGLTPVIDHVKSLGMEFGIWV 375
                  346899999******9988887612256689*************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 5939.99
//
Query:       CTQ27903.1  [L=421]
Description: lactose/galactose transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.8e-195  648.9  28.1   3.7e-195  648.5  28.1    1.0  1  LacY_symp      LacY proton/sugar symporter
    1.2e-24   86.9  47.8    1.7e-23   83.1  38.8    2.0  2  MFS_1          Major Facilitator Superfamily
    3.3e-24   85.5  31.1    6.8e-24   84.4  29.8    2.1  2  MFS_1_like     MFS_1 like family
    1.3e-08   33.9  28.8    1.3e-08   33.9  28.8    2.0  2  MFS_2          MFS/sugar transport protein
  ------ inclusion threshold ------
          6    7.2   7.0         19    5.6   0.0    3.4  3  Wzz            Chain length determinant protein


Domain annotation for each model (and alignments):
>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  648.5  28.1    1e-198  3.7e-195       4     405 ..       9     410 ..       6     417 .. 0.99

  Alignments for each domain:
  == domain 1  score: 648.5 bits;  conditional E-value: 1e-198
   LacY_symp   4 lkntnfylfalffffyffimsayfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllvlfapfliyvfepllqln 102
                 ++n nf++f+lfff+yffim+++fp++p+wl++v+gl ktetG+vfs +slf+i fqp++G+isdklGlkk+l+w++++llvl+apf++yvf+pll++n
  CTQ27903.1   9 KNNPNFWIFGLFFFLYFFIMATCFPFLPIWLSDVIGLNKTETGLVFSSLSLFAICFQPILGVISDKLGLKKHLMWIVTVLLVLIAPFFLYVFAPLLKTN 107
                 5678*********************************************************************************************** PP

   LacY_symp 103 ilvGalvGgvflGlvysagagaieayiekvsraskfeyGkarvfGclGyalcaslaGilfsidpslvfwlasgfalilllllllskpdksssakvadal 201
                 i++Gal Gg ++G+v+sagaga+eayie+vsr+s feyGkar fGclG+alca+ aG+lfsi+p+ vfw++s +al+l++l+ ++kp++s+sa+v+d+l
  CTQ27903.1 108 IWLGALSGGAYIGFVFSAGAGAMEAYIERVSRNSGFEYGKARTFGCLGWALCATTAGMLFSINPEWVFWMGSAAALLLVVLVAIAKPQASQSAQVMDSL 206
                 *************************************************************************************************** PP

   LacY_symp 202 GankeafslrlalelfkdrklwvfvlyvvGvasvydvfdqqfavffkslfespeaGtrvfGyvttagellnalimfiaplivnriGaknalliagvims 300
                 Gan+ a+ l++a+ +f++rk+w+f+lyv+Gva+vydvfdqqfa+ffks+f++peaGtr+fG++ttage++na+imf  p+i+nriGakn+lliag++m+
  CTQ27903.1 207 GANRPAIDLKTAVRMFRQRKMWMFILYVIGVACVYDVFDQQFATFFKSFFATPEAGTRAFGFATTAGEICNAIIMFSSPWIINRIGAKNTLLIAGMVMA 305
                 *************************************************************************************************** PP

   LacY_symp 301 vrilgsafattalevvilkllhalevplllvgvfkyitsafdkrlsatifligfqlskqlaivllstlaGklydkvGfqtaylvlgiivlsltlisvft 399
                  r++gs+fatta evv lk+lhalevp+llvg+fkyit++fd+rlsati+l+gfq++kq+a+++ls++aG++yd++Gfq++y++lg i l++tlis+ft
  CTQ27903.1 306 ARMIGSSFATTAAEVVALKMLHALEVPFLLVGAFKYITGVFDVRLSATIYLVGFQFAKQVAAIFLSAFAGNMYDRIGFQDTYMILGGIALTVTLISAFT 404
                 *************************************************************************************************** PP

   LacY_symp 400 lskske 405
                 l ++++
  CTQ27903.1 405 LAGKTK 410
                 *99875 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1  38.8   4.8e-27   1.7e-23       3     303 ..      19     323 ..      17     345 .. 0.83
   2 !    7.9   3.3   0.00036       1.3     127     170 ..     360     403 ..     332     418 .. 0.53

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 4.8e-27
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllll..fasslw.lllvlrvlqGl 97 
                 l +fl+++ +++ +p+lp++l++  g++++e gl+++  +l+a+ ++++lG++sd++G ++ ++++  +l++l + ++l  f ++l  + ++l +l+G 
  CTQ27903.1  19 LFFFLYFFIMATCFPFLPIWLSDVIGLNKTETGLVFSSLSLFAICFQPILGVISDKLGLKKhLMWIVTVLLVLIAPFFLyvF-APLLkTNIWLGALSGG 116
                 678*******************************************************999999999999999944444356.7777778888888888 PP

       MFS_1  98 ga.galfpagaaliadwfpk..eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgp 193
                 ++ g++f+aga ++ ++  +  ++ g+ +g + ++  lG +l +  +g+l  s++ ++vf++  +++ll++vl  + +  ++ + + +    + +  ++
  CTQ27903.1 117 AYiGFVFSAGAGAMEAYIERvsRNSGFEYGKARTFGCLGWALCATTAGMLF-SINPEWVFWMGSAAALLLVVL--VAIAKPQASQSAQV--MD-SLGAN 209
                 88888888888888888888334667777**********************.999***************664..44444444444444..44.35688 PP

       MFS_1 194 aplvp..awkallkdpvlwillialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrrrlllallllllaa 288
                 +p+++      +++++ +w++++ ++++++++  + + + +++++ +  +  g    g++  ++ + +ai+++ + ++++r+g++++ll+a+ ++++  
  CTQ27903.1 210 RPAIDlkTAVRMFRQRKMWMFILYVIGVACVYDVFDQQFATFFKSFFATPeaGTRAFGFATTAGEICNAIIMFSSPWIINRIGAKNTLLIAGMVMAARM 308
                 888887744555555569************************99999999**88999999************************************999 PP

       MFS_1 289 lglallavtssavll 303
                 +g  ++ ++ + v+l
  CTQ27903.1 309 IGSSFATTAAEVVAL 323
                 999999888444443 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00036
       MFS_1 127 sagfslGailgpllggllasslgWravfyilaivsllafvlfll 170
                 + + +++ai+  +++g +++ +g++ +++il++++l + ++ ++
  CTQ27903.1 360 QFAKQVAAIFLSAFAGNMYDRIGFQDTYMILGGIALTVTLISAF 403
                 33444555555555555555555555555555555555553222 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4  29.8   1.9e-27   6.8e-24       2     353 ..      15     357 ..      14     389 .. 0.80
   2 ?   -0.3   0.1       0.1   3.7e+02      46      86 ..     366     406 ..     356     417 .. 0.77

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 1.9e-27
  MFS_1_like   2 islkilyFfffaalgsllPYltiylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkk...vvilslllsavlflsllfippskerqeesk 96 
                 +   +++F++f ++++ +P+l i+l+  +gl+  e g++ + l l++i  +pi+gv++D++g +k    +v + l+l a +fl ++  p          
  CTQ27903.1  15 WIFGLFFFLYFFIMATCFPFLPIWLSdVIGLNKTETGLVFSSLSLFAICFQPILGVISDKLGLKKHlmwIVTVLLVLIAPFFLYVF-AP---------- 102
                 566789*******************9568***********************************9944445555555555666555.55.......... PP

  MFS_1_like  97 levsvaqdvdaektfwilfllvvla.sfflaailvlldaatlkelgedrkd.yGrqrlfGsvGyaifafitGilidhysvnllpysallyvlaallvis 193
                            ++++w+ +l    +  f+ +a    ++a  ++ ++ +++  yG+ r fG +G+a+ a+  G+l+      +      +  +aall+++
  CTQ27903.1 103 ---------LLKTNIWLGALSGGAYiGFVFSAGAGAMEAY-IERVSRNSGFeYGKARTFGCLGWALCATTAGMLFSINPEWV----FWMGSAAALLLVV 187
                 .........2678888877776655267788888888875.66676555544***********************9988843....3556666666666 PP

  MFS_1_like 194 llvvlilnetekesklkvtksl.........qvllnilknpeviifll....valilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfff 279
                 l+ +++++  + ++   v+ sl         +  +++++++++++f+l    va++  ++   + +F++ ++   +a +   G +++ g + + ++ f 
  CTQ27903.1 188 LVAIAKPQASQSAQ---VMDSLganrpaidlKTAVRMFRQRKMWMFILyvigVACVYDVFDQQFATFFKSFFATPEAGTRAFGFATTAGEICNAIIMFS 283
                 66644444443333...33333455789999999************99444456899999999999********************************* PP

  MFS_1_like 280 aeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgl 353
                 + ++++++G+ + l+ia +++++r ++ ++ + a  v+ + +Lh++ +  l + a +y+  ++  +l at+  +
  CTQ27903.1 284 SPWIINRIGAKNTLLIAGMVMAARMIGSSFATTAAEVVALKMLHALEVPFLLVGAFKYITGVFDVRLSATIYLV 357
                 *******************************************************************9997654 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.1
  MFS_1_like  46 tsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfip 86 
                  +i+ + + g++ Dr+g + + +il+ ++ +v+++s + + 
  CTQ27903.1 366 AAIFLSAFAGNMYDRIGFQDTYMILGGIALTVTLISAFTLA 406
                 56777788999999999999999988888888887766554 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9  28.8   3.6e-12   1.3e-08       2     317 ..      17     323 ..      16     346 .. 0.78
   2 ?    0.9   1.6     0.037   1.3e+02     270     309 ..     365     405 ..     333     414 .. 0.55

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 3.6e-12
       MFS_2   2 yglgalaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiil.lftppelsqsakfiw 99 
                 +gl  + + +++++   +l i ++dv+gl+ +  glv+ +  l+ + + pi+G+++dk+ +   + + w++  +++l + ++l +f+p+      + iw
  CTQ27903.1  17 FGLFFFLYFFIMATCFPFLPIWLSDVIGLNKTETGLVFSSLSLFAICFQPILGVISDKLGL--KKHLMWIVTVLLVLIAPFFLyVFAPLL----KTNIW 109
                 67777888888888888********************************************..899999998776666555551555555....899** PP

       MFS_2 100 llvtyillrilytlfeipyvslvpvltkdydeRtsltsvr..sflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtker 196
                 l +++ +   +y  f  + ++ ++++  ++  R+s + +   +++  lg +l+a  a+ l+ i  +       +  ++   a+L l++ ++++  + ++
  CTQ27903.1 110 LGALSGG---AYIGFVFSAGAGAMEAYIERVSRNSGFEYGkaRTFGCLGWALCATTAGMLFSINPE-------WVFWMGSAAALLLVVLVAIAKPQASQ 198
                 *****99...67777777777777777799999999999633789999999999999999999998.......66666555555555555444433333 PP

       MFS_2 197 vemrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisal...lgiplwqplakrlgkknt 291
                  + +  ++ +++++   l+   ++fr+r++++++l+++ +a  + v    ++ +++ +    ++   +f +++t++ +   + ++  +++  r+g knt
  CTQ27903.1 199 SA-QVMDSLGANRPAIDLKTAVRMFRQRKMWMFILYVIGVACVYDVFDQQFATFFKSFFAtPEAGTRAFGFATTAGEIcnaIIMFSSPWIINRIGAKNT 296
                 22.4467777777777778888899999999999999999999999999999999999993444455555555777778889999************** PP

       MFS_2 292 yllgalltivllvlvlll.qpsnlllf 317
                  l++ +++++ +++  ++ +++ ++++
  CTQ27903.1 297 LLIAGMVMAARMIGSSFAtTAAEVVAL 323
                 *************99999433333333 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.037
       MFS_2 270 isallgiplwqplakrlgkk.ntyllgalltivllvlvlll 309
                 ++a+  ++++ ++  r+g + ++++lg +++ v l+ ++ l
  CTQ27903.1 365 VAAIFLSAFAGNMYDRIGFQdTYMILGGIALTVTLISAFTL 405
                 44444555555555555533133334444444444444443 PP

>> Wzz  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.5     0.058   2.1e+02      12      35 ..      77     100 ..      74     109 .. 0.79
   2 ?   -0.8   0.1      0.53   1.9e+03      23      47 ..     178     202 ..     171     205 .. 0.67
   3 ?    5.6   0.0    0.0053        19       3      29 ..     213     239 ..     211     247 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.058
                 XXXXXXXXXXXXXXXXXXXXXXXX CS
         Wzz  12 LwkrkklIilvtllfallaviyaf 35 
                 L+k+ ++I+ v l+ ++  ++y+f
  CTQ27903.1  77 LKKHLMWIVTVLLVLIAPFFLYVF 100
                 788999999888888887777776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.53
                 XXXXXXXXXXXXXXXXX-EEEEEEE CS
         Wzz  23 tllfallaviyaflatpkYtataqi 47 
                   ++all v+++ +a+p+ + +aq+
  CTQ27903.1 178 GSAAALLLVVLVAIAKPQASQSAQV 202
                 4566666677778888887777776 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0053
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         Wzz   3 iDLieLlsvLwkrkklIilvtllfall 29 
                 iDL+  ++++++rk++ +++ ++++++
  CTQ27903.1 213 IDLKTAVRMFRQRKMWMFILYVIGVAC 239
                 9***************99998887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       978  (0.0545485); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3022.31
//
Query:       CTQ27904.1  [L=104]
Description: L-rhamnose mutarotase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-29  100.0   1.7    8.2e-29   99.8   1.7    1.0  1  rhaM            L-rhamnose mutarotase
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.017   14.8   0.0    1.0  1  DAO             FAD dependent oxidoreductase
      0.059   12.1   0.0      0.065   12.0   0.0    1.0  1  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
       0.12   12.5   2.7       0.17   12.0   2.7    1.3  1  ABM             Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> rhaM  L-rhamnose mutarotase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   1.7   1.8e-32   8.2e-29       1     108 []       3     103 ..       3     103 .. 0.93

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 1.8e-32
        rhaM   1 RyaqvlklkpeaieeYkklHaevwpevlealkeagirnysIyldeegntLfailevgddeeadaaaaaadpkvqeWwalmaklqeaapsaspakeeekw 99 
                 R a+v++++p+a eeY+++H+ +wpe+++ lk++g+++y Iyld+e+++Lfa++e++ +e++++a+a+ ++++q+Ww++m++++ ++p++sp ++e   
  CTQ27904.1   3 RKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKDHGAHHYAIYLDKERHLLFATVEIE-SEARWEAVAS-TEVCQRWWKYMREVMPSNPDNSPLSAE--- 96 
                 889*****************************************************3.6666766666.********************9999665... PP

        rhaM 100 teleevFhl 108
                   l+evF+l
  CTQ27904.1  97 --LKEVFYL 103
                 ..*****86 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.7e-06     0.017     233     299 ..      17      87 ..       2     100 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.7e-06
                 HSTGSG.CSEEEEE...EEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGGG CS
         DAO 233 klvspa.ailpvpe...tdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedidellealrklfPql 299
                 + ++++ +i+p++e   +d++++++ ++ +k+ ++l+ + + e ++  ++ ++ e +++ ++++r+++P+ 
  CTQ27904.1  17 EYQRRHnPIWPELEavlKDHGAHHYAIYLDKERHLLFATVEIESEARWEAVASTEVCQRWWKYMREVMPSN 87 
                 3444444999999999888888888899999888888887765554555699****************983 PP

>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.4e-05     0.065     245     321 ..      11      87 ..       2     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
                     CHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEECSSHHHHHHHHHHHHHT-EEEEEEESSS-HHHHHHHHHHS.TT CS
  Oxidored_nitro 245 kevaperiaeerarlldaladyheylagkrvaiygdpdrvvalarllkelGmevvaagtetahrddeerlkaeleeg 321
                     +++a e++++ ++ ++++l+++ +  +    aiy d +r + +a++  e +++  a+++++  +++++ +++ ++ +
      CTQ27904.1  11 NPDAHEEYQRRHNPIWPELEAVLKDHGAHHYAIYLDKERHLLFATVEIESEARWEAVASTEVCQRWWKYMREVMPSN 87 
                     4667899*************************************************************999998876 PP

>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.7   3.9e-05      0.17       1      75 [.       1      76 [.       1      79 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.9e-05
                CEEEEEEEEESTTGHHHHHHHHHHHHH...HHHHTSTTEEEEEEEEEETSTTEEEEEEEESSHHHHHHHHTSHHHHHH CS
         ABM  1 mviviaeirvkpgqaeafldafaeave...sllaeepGclgyellrstedpdevvvieeWeseaaleahlksphfkaa 75
                m+     ++v p+++e++ ++   + +   ++l +  G ++y++++ +++++  + + e esea +ea  +++ ++++
  CTQ27904.1  1 MIRKAFVMQVNPDAHEEYQRRHNPIWPeleAVL-KDHGAHHYAIYL-DKERHLLFATVEIESEARWEAVASTEVCQRW 76
                677778899*********998555544333685.************.9999999999999********9999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 832.07
//
Query:       CTQ27905.1  [L=382]
Description: putative alcohol dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-121  405.9   3.1   1.4e-121  405.8   3.1    1.0  1  Fe-ADH    Iron-containing alcohol dehydrogenase
    4.7e-15   56.0   1.1    8.5e-08   32.2   0.0    2.1  2  Fe-ADH_2  Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.8   3.1  1.6e-125  1.4e-121       2     364 .]       9     374 ..       8     374 .. 0.98

  Alignments for each domain:
  == domain 1  score: 405.8 bits;  conditional E-value: 1.6e-125
                 SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHHH CS
      Fe-ADH   2 trivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKai 100
                 +  ++g+ga+ ++ +l++  ++ +alivtd++++ k+glld + ++l+e+++++++fd+v pnpt++ v+++ a+++++++d++ia+GGGs+iDtAKai
  CTQ27905.1   9 KISLHGAGAIGDMVKLVAGKQWGKALIVTDGQLV-KLGLLDSLFAALDEQQMAYQLFDEVFPNPTEALVQQGYAAYQAARCDYLIAFGGGSPIDTAKAI 106
                 56689***************999*********99.**************************************************************** PP

                 HHHTT...................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHHH CS
      Fe-ADH 101 alllanpe.vedylgegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEayvs 198
                  +l+anp+   +y g+gk+ k++++pl+ai TtaGt++e+t++avi d+e+++k +i dp+l+Pd+a+ D  ++l+ P++vtaatg+Dal+ha+Ea+vs
  CTQ27905.1 107 KILTANPGpSTAYSGVGKV-KNAGVPLVAINTTAGTAAEMTSNAVIIDSERQVKEVIIDPNLIPDIAVDDASVMLDIPPAVTAATGMDALTHAIEAFVS 204
                 ******9658888899987.7788*************************************************************************** PP

                 HT---TTSSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH..........HHHHH CS
      Fe-ADH 199 kkanplsdalaleairliaknleravadgedleareqmllastlaglafsnaglgavHalahalgalfgiphglanaillpavlrfnaeaaperlaqla 297
                  +a+pl+da aleairli  +l++av+dg+dl+areqm+ +++lag+af++aglg+vHalah+ ga +++phg++naillp + +fn+++a +r+a++a
  CTQ27905.1 205 VGAHPLTDANALEAIRLINLWLPKAVDDGHDLQAREQMAFGQYLAGMAFNSAGLGLVHALAHQPGATHNLPHGVCNAILLPIIENFNRPNAVARFARVA 303
                 ******************************************************************99******************************* PP

                 HT...........T--HHHHHHHHHHHHHTT---SHHHHT-TT-HHHHHHHHHT-TSGGGGSSS---HHHH CS
      Fe-ADH 298 ralgge....sdeeaaeeliealrellkelglptsLselgvdeedldklaeaalkdrslannpreltaedv 364
                 +a+g +    sde+a  e+i+a+r+l k++g+p+++s+lgv+++d++ + ++al+d++   npr++++++v
  CTQ27905.1 304 QAMGVDtrgmSDEAASMEAINAIRTLSKRVGIPQGFSQLGVSKADIEGWLDKALADPCAPCNPRPASRDEV 374
                 ****99*************************************************************9986 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   9.5e-12   8.5e-08       3      95 ..      14     107 ..      13     114 .. 0.95
   2 !   21.2   1.4   2.2e-08    0.0002      98     246 ..     128     277 ..     124     279 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 9.5e-12
    Fe-ADH_2   3 gegaleklgellkelelkkvllvadentkka.agekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvs 95 
                 g ga+ ++ +l++ +++ k+l+v+d +  k+ + +++  +l+e+++  ++++ev +++++  v++  +a +++++d ++a GgG+ iD+ak + 
  CTQ27905.1  14 GAGAIGDMVKLVAGKQWGKALIVTDGQLVKLgLLDSLFAALDEQQMAYQLFDEVFPNPTEALVQQGYAAYQAARCDYLIAFGGGSPIDTAKAIK 107
                 5799***********************9888799*********************************************************986 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 2.2e-08
    Fe-ADH_2  98 lnvpyvsvpTaaSvDGfaspgaslvvd..gkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaamvqeaa 193
                 ++vp+v++ T+a       ++a ++    + k+ +  +  +P   + D +v+ + P + +a+   D+l   +  + +  a+ +++  a+++++ +   +
  CTQ27905.1 128 AGVPLVAINTTAGTAAEMTSNAVIIDSerQVKEVIiDPNLIPDIAVDDASVMLDIPPAVTAATGMDALTHAIEAFVSVGAHPLTDANALEAIRLINLWL 226
                 7899****999988876666666665546778888889999999999***************999********************************** PP

    Fe-ADH_2 194 eklvedkketealeellealalsgigisrpaSGsEHliSHaldmlalkqalHG 246
                  k+v+d+++ +a e+++ +  l+g+++ +++ G  H ++H   +++  +  HG
  CTQ27905.1 227 PKAVDDGHDLQAREQMAFGQYLAGMAFNSAGLGLVHALAHQPGATH--NLPHG 277
                 ****************************************999988..88888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3219.39
//
Query:       CTQ27906.1  [L=334]
Description: Rhamnose ABC transport system permease component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-47  161.7  39.6    1.8e-47  161.7  39.6    1.4  2  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       0.2   3.7e+03      59      70 ..      29      40 ..      16      49 .. 0.57
   2 !  161.7  39.6     1e-51   1.8e-47       7     267 ..      59     318 ..      53     319 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.2
  BPD_transp_2 59 llvallvgaavg 70
                  +l+a+ +++++g
    CTQ27906.1 29 FLLAVTLAVFIG 40
                  333333333333 PP

  == domain 2  score: 161.7 bits;  conditional E-value: 1e-51
  BPD_transp_2   7 tlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvgltllll 103
                    +++  ai++l++a+++ ia++i+l++++ mal++ v++  +a+++   +l+++++l+vg+++gl++gllv+r+++ +++it++++s+ +g+t+   
    CTQ27906.1  59 FTFTEKAIVVLPMAMLI-IAREIDLSVASTMALSSTVMGFCAAAGMD-TPLLVVIGLGVGLLCGLFNGLLVTRFNLSSIVITIGTMSLYRGITY--- 150
                   5677779**********.****************9999999999887.**********************************************... PP

  BPD_transp_2 104 tgitsgvkgqssvkellgfagallsfl.savivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaGallal 199
                     i  g +  ++ +e ++++g+   ++  ++ ++l++ll++a+++ll++t+fGr+ +a+g+n++ a ++Ginvkr +l++f++ g++Agla++ll+ 
    CTQ27906.1 151 --ILLGDQALNHYPESFAWFGQGYVWGaLSFEFALFILLAAAFTFLLHKTNFGRRTYAIGNNPTGAWFSGINVKRHNLVLFALVGLMAGLAAVLLTS 245
                   ..55556666666666666555555550455559*************************************************************** PP

  BPD_transp_2 200 llgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilv 267
                   +lgs  p   +g+++ +++++vlGg+      gs+ g++i+a+++g+v+  +l+ll +p  + +v++ga+li+v
    CTQ27906.1 246 RLGSTRPTLAMGWELAVVTMAVLGGVnilggsGSMPGVIIAAFLMGLVTF-GLSLLNVPGIVMSVIIGAMLIVV 318
                   *************************************************9.*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1015  (0.0566122); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2391.60
//
Query:       CTQ27907.1  [L=335]
Description: putative bacterial inner-membrane translocator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-42  145.3  39.5    2.8e-42  144.7  39.5    1.3  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.7  39.5   1.6e-46   2.8e-42       2     268 .]      38     306 ..      37     306 .. 0.89

  Alignments for each domain:
  == domain 1  score: 144.7 bits;  conditional E-value: 1.6e-46
  BPD_transp_2   2 ilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl.lllallvallvgaavglllgllvlrlkvdeliitllllsvlvg 97 
                   ++++ + +ail+i+AlG+++v  ++ +i+l+ ++ +al ++++all a ++   + ++l++a l+g+++g+++gllv+rl+++ +++tl+++s+ +g
    CTQ27907.1  38 LVEMFNDTAILIILALGQMMVL-LTKGIDLSMAANLALTGMIVALLNAHYPGIpVVALLALATLLGLLMGVINGLLVWRLGIPAIVVTLGTMSIYRG 133
                   56778889**************.***********999997777777766654338888999************************************ PP

  BPD_transp_2  98 ltlllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaG 194
                   +++ llt + + +  q s + l+   + ll      ++++a++++l+v ++lr++r+Gral+ +g+n +aa + Gin +++++++f +sgalAg+ G
    CTQ27907.1 134 IIF-LLTDGGWVNSHQMSADFLSLPRSPLLGLP--LLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCG 227
                   ***.55555555555555554444444444444..6789********************************************************** PP

  BPD_transp_2 195 allalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                    l + +++++++++  g++++++aa+v+Gg+      g++lg ++Gal +gv+++ +l ++gi++ ++++++ga+++ ++
    CTQ27907.1 228 YLWISRFAVAYVDVANGFELQVVAACVIGGIstmggsGRVLGCLCGALFLGVINN-ALPVIGISPFWQMAISGAVIVMAV 306
                   *******************************************************.********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2457.65
//
Query:       CTQ27908.1  [L=503]
Description: fused D-ribose transporter subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-55  187.6   0.0    3.8e-31  108.4   0.0    2.2  2  ABC_tran     ABC transporter
    1.8e-06   28.0   1.6     0.0086   15.9   0.0    3.3  4  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    2.1e-05   24.5   0.0     0.0075   16.2   0.0    3.0  4  RsgA_GTPase  RsgA GTPase
    4.4e-05   23.1   0.0     0.0012   18.5   0.0    2.4  2  AAA_29       P-loop containing region of AAA domain
    0.00012   22.7   0.1    0.00041   20.9   0.0    1.8  2  AAA_23       AAA domain
    0.00045   20.5   2.6     0.0047   17.2   0.5    3.0  2  AAA_22       AAA domain
    0.00061   19.3   0.4        0.2   11.0   0.0    3.0  3  SMC_N        RecF/RecN/SMC N terminal domain
    0.00079   19.2   0.0     0.0011   18.7   0.0    1.2  1  AAA_15       AAA ATPase domain
     0.0044   17.0   0.0        1.6    8.7   0.0    2.5  2  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
     0.0059   16.3   1.7        0.1   12.3   0.4    3.2  3  AAA_30       AAA domain
  ------ inclusion threshold ------
      0.022   13.6   3.5        1.3    7.7   0.2    3.0  3  ABC_ATPase   Predicted ATPase of the ABC class
      0.029   14.5   0.1       0.82    9.8   0.1    2.5  2  MMR_HSR1     50S ribosome-binding GTPase
      0.039   14.3   0.2       0.68   10.3   0.1    2.6  2  AAA_16       AAA ATPase domain
       0.12   12.5   0.4        1.3    9.2   0.4    2.5  1  AAA_33       AAA domain
       0.14   11.7   1.4        1.2    8.6   0.1    2.7  3  AAA_25       AAA domain
       0.16   11.1   0.0       0.66    9.1   0.0    2.0  2  DUF815       Protein of unknown function (DUF815)
       0.19   10.5   0.0       0.65    8.8   0.0    1.7  2  DLIC         Dynein light intermediate chain (DLIC)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   0.0   3.6e-34   3.8e-31       1     137 []      23     174 ..      23     174 .. 0.97
   2 !   77.3   0.0   1.5e-24   1.6e-21       3     136 ..     275     427 ..     273     428 .. 0.86

  Alignments for each domain:
  == domain 1  score: 108.4 bits;  conditional E-value: 3.6e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH..................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..................x RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren..................e 80 
                 l+nv+l+l +g+++a++GenGaGKStL+k+++g ++p+eGeil++  +++  ++++  +  i  ++qe+ lf+el+v en                  +
  CTQ27908.1  23 LENVQLDLWPGKVTALIGENGAGKSTLVKVMTGIYQPEEGEILYKAIPIHLpTPESAHKVGITAIHQETVLFDELSVSENifvgqylykgllktldwpA 121
                 78***********************************************997888888899************************************** PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 + ++++++l++l+ + ++  ++    ++LS  q+ +va+aral+ ++++++lDEpta
  CTQ27908.1 122 MHRRANEILTRLEVQIDPRATL----KTLSIAQRHMVAIARALAFDAQVVILDEPTA 174
                 ***************9999999....*****************************97 PP

  == domain 2  score: 77.3 bits;  conditional E-value: 1.5e-24
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSB...HHHH.................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx...xxxx.................. RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpelt...vren.................. 79 
                 ++s+ l++ge++++ G  GaG + L+++l+g ++p +Gei+l+g+ ++  q+    r+ i ++p+e q +  +    +++n                  
  CTQ27908.1 275 HISFRLRKGEILGFYGLVGAGRTELMQALSGVSRPSSGEIRLNGRTMRFhQPADAIRAGIVCVPEERQKQGAIIalpIAQNislpqlsklnpngvlnda 373
                 79********************************************9988****************777777642224555*****9999999998653 PP

                 HHHTC...HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdee...iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                     e   +++++s+l+ k +  +      ++LSgG +q+v++ + l+++p++++lDEpt
  CTQ27908.1 374 R---EwrlADEYASRLQVKAFSWRQP---VETLSGGNQQKVVIGKWLATQPEVIILDEPT 427
                 3...2345888888888887655544...6*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.2e-06    0.0086       1      23 [.      35      57 ..      35      77 .. 0.84
   2 !    6.9   0.4    0.0046       4.9     238     297 ..     147     203 ..     132     208 .. 0.81
   3 ?   -3.8   0.0       8.2   8.7e+03       4      25 ..     288     309 ..     286     340 .. 0.69
   4 ?    1.5   0.0       0.2   2.1e+02     250     285 ..     413     445 ..     352     459 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.2e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldlla 23
                +++liG Ng+GKS+L + + ++ 
  CTQ27908.1 35 VTALIGENGAGKSTLVKVMTGIY 57
                69**************9998875 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0046
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 S  ++++ a++ al+ ++    ++++DEp + L  + + +++ ++++l++ g  +++ +H
  CTQ27908.1 147 SIAQRHMVAIARALAFDA---QVVILDEPTAALSQHEILEFYHIVERLKQDGKAILFISH 203
                 555666666666777777...9*************66666667779999999999****9 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 8.2
      AAA_21   4 liGpNgsGKSnLLdaldllarl 25 
                 ++G  g+G + L++al++++r 
  CTQ27908.1 288 FYGLVGAGRTELMQALSGVSRP 309
                 6777888888899999888653 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.2
      AAA_21 250 allralkkgsllliDEpEngLHPkllrrllellkel 285
                 +l+ ++    ++++DEp  g++    + + ++++el
  CTQ27908.1 413 WLATQP---EVIILDEPTKGIDIGSKAAVHQFMSEL 445
                 344433...9**********9984444444444333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.1e-06    0.0075      97     129 ..      31      63 ..      18      68 .. 0.78
   2 ?   -3.3   0.0       7.1   7.5e+03      57      84 ..     174     203 ..     137     215 .. 0.56
   3 ?    4.5   0.0     0.027        28      86     131 ..     269     315 ..     246     321 .. 0.84
   4 ?   -2.3   0.0       3.5   3.7e+03      57      86 ..     431     459 ..     425     467 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.1e-06
                  CTTSEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallpelelktge 129
                  + +k+++l+G+ G+GKStL++++++  + + ge
   CTQ27908.1  31 WPGKVTALIGENGAGKSTLVKVMTGIYQPEEGE 63 
                  4569*****************999866666555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.1
                  GG--HHH..HHHHHHHHHHHTTSEEEE--T CS
  RsgA_GTPase  57 Dlleeee..eleelkeelealgyevllvsa 84 
                    l+++e  e+ ++ e+l++ g ++l++s 
   CTQ27908.1 174 AALSQHEilEFYHIVERLKQDGKAILFISH 203
                  333333334445556666666666666655 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.027
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  + +++++++ +l++ ++  + G  G+G++ L+ al +  + + ge++
   CTQ27908.1 269 HPTEFAHISFRLRKgEILGFYGLVGAGRTELMQALSGVSRPSSGEIR 315
                  4567889999999889*******************998777777776 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 3.5
                  GG--HHHHHHHHHHHHHHTTSEEEE--TTT CS
  RsgA_GTPase  57 Dlleeeeeleelkeelealgyevllvsakt 86 
                  D+ +++  ++++++el + g++v++vs++ 
   CTQ27908.1 431 DIGSKAA-VHQFMSELVSQGLAVIMVSSEL 459
                  6666666.8999999999999999999875 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.2e-06    0.0012      16      43 ..      27      54 ..      22      66 .. 0.76
   2 ?    1.7   0.0      0.21   2.2e+02      16      55 ..     277     317 ..     266     319 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.2e-06
      AAA_29 16 tieidlkgatlltGpsGsGKSTllDAiq 43
                ++++ +  +t l+G++G+GKSTl+  ++
  CTQ27908.1 27 QLDLWPGKVTALIGENGAGKSTLVKVMT 54
                555665669**************96655 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
      AAA_29  16 tieidlkg.atlltGpsGsGKSTllDAiqalLvpak.kvrfN 55 
                 +++++  g +  + G  G+G + l+ A++ +  p++ ++r N
  CTQ27908.1 277 SFRLRK-GeILGFYGLVGAGRTELMQALSGVSRPSSgEIRLN 317
                 455653.3477899**************99999888777776 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   3.9e-07   0.00041       6      38 ..      19      52 ..       8      56 .. 0.85
   2 ?   -1.6   0.0         3   3.2e+03      15      40 ..     276     304 ..     271     306 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.9e-07
      AAA_23  6 nfrsfrdqeidF.skgltlItGpNGaGKTTildA 38
                ++r ++++++d+   ++t+++G+NGaGK+T++  
  CTQ27908.1 19 GVRALENVQLDLwPGKVTALIGENGAGKSTLVKV 52
                67888*******6669***************875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3
      AAA_23  15 idF...skgltlItGpNGaGKTTildAik 40 
                 i F   +  +  ++G  GaG T +++A+ 
  CTQ27908.1 276 ISFrlrKGEILGFYGLVGAGRTELMQALS 304
                 55555555678899***********9985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.5   4.4e-06    0.0047       6     137 .]      34     209 ..      32     209 .. 0.76
   2 ?    1.8   0.1      0.25   2.7e+02       7      25 ..     285     303 ..     280     455 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.4e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee......................erpevvfvtlpsst...sskdllrellralglelka......... 70 
                 ++++++Ge G+GK+tl++ ++  ++ e+                          ++ +v+f +l++s+     + l++ ll+ l+ ++ +         
  CTQ27908.1  34 KVTALIGENGAGKSTLVKVMTGIYQPEEGEILykaipihlptpesahkvgitaiHQETVLFDELSVSEnifVGQYLYKGLLKTLDWPAMHrraneiltr 132
                 6799*****************9996554444499************99999999888888889998888888899999999999999999888888888 PP

      AAA_22  71 ........erlsseell...ealeqalrarav.....ielliiDEaqh.lrs.eealeeLrsllnlsrkgvqliLvGtpelrkll 137
                         +  +++ l    +++   +    +      +++i+DE    l s +e+le+ ++     +++ + iL++ +++++++
  CTQ27908.1 133 levqidprA--TLKTLSiaqRHMVAIA----RalafdAQVVILDEPTAaL-SqHEILEFYHIVER-LKQDGKAILFISHKFDEIF 209
                 888887442..3333321014444444....24556*********99988.54888888744444.5677888888888888775 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.25
      AAA_22   7 ilvvtGesGtGKTtllrrl 25 
                 il  +G +G+G+T l++ l
  CTQ27908.1 285 ILGFYGLVGAGRTELMQAL 303
                 5556899999999999887 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00019       0.2      23      42 ..      32      51 ..      16      56 .. 0.78
   2 ?    4.4   0.1      0.02        21     136     205 ..     145     212 ..      86     225 .. 0.80
   3 ?   -0.1   0.0      0.51   5.4e+02     136     189 ..     399     448 ..     282     475 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
                TSSEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 23 sksftaivGpNGSGKsnlld 42
                  ++ta++G+NG+GKs l+ 
  CTQ27908.1 32 PGKVTALIGENGAGKSTLVK 51
                4579************9986 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.02
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SS.HHHCCC- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislr.eemleka 205
                 +LS  ++ +va+a  +A      a +++lDe  aaL ++++ ++ +++++ +++   ++ is++ +e++e a
  CTQ27908.1 145 TLSIAQRHMVAIARALAFD----AQVVILDEPTAALSQHEILEFYHIVERLKQDgKAILFISHKfDEIFELA 212
                 7888888888888888875....5689*****************9999988877455667888734455544 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.51
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn 189
                 +LSgG+++ v +   +A+q   p+ + +lDe    +D    ++v +++ e  ++
  CTQ27908.1 399 TLSGGNQQKVVIGKWLATQ---PE-VIILDEPTKGIDIGSKAAVHQFMSELVSQ 448
                 6777766666666555554...22.45677777777777777777777766544 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.1e-06    0.0011      12      44 ..      21      54 ..      20     107 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.1e-06
      AAA_15 12 Rslkdveidlsee.ltvliGkNnsGKSsileald 44
                R+l++v++dl +  +t liG+N++GKS++++++ 
  CTQ27908.1 21 RALENVQLDLWPGkVTALIGENGAGKSTLVKVMT 54
                89999*****9988****************9875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0015       1.6      18      40 ..      30      54 ..      19      64 .. 0.79
   2 ?    5.5   0.0     0.015        16      11      39 ..     277     303 ..     267     310 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0015
                H..TEEEEEEESTTSSHHHHHHHHH CS
        TsaE 18 l..gdvilLeGdLGaGKTtlvrgla 40
                l  g+v +L G+ GaGK+tlv+ + 
  CTQ27908.1 30 LwpGKVTALIGENGAGKSTLVKVMT 54
                2457899**************9875 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.015
                 HHHHHHCHTEEEEEEESTTSSHHHHHHHH CS
        TsaE  11 gkklakalgdvilLeGdLGaGKTtlvrgl 39 
                   +l k  g+++ ++G +GaG T l+++l
  CTQ27908.1 277 SFRLRK--GEILGFYGLVGAGRTELMQAL 303
                 444444..88999*************997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.4   9.7e-05       0.1      19      53 ..      34      68 ..      27     202 .. 0.71
   2 ?   -0.2   0.0      0.68   7.2e+02      23      46 ..     288     311 ..     279     325 .. 0.77
   3 ?   -0.9   0.0       1.1   1.1e+03      59     122 ..     379     455 ..     366     456 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.7e-05
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggrviglA 53
                +v++l G  G+GK+t++k+++ +++ ++g+++  A
  CTQ27908.1 34 KVTALIGENGAGKSTLVKVMTGIYQPEEGEILYKA 68
                5899*********************9965554433 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.68
      AAA_30  23 ltGpAGtGKttalkalreaweaag 46 
                   G  G+G t +++al  + + + 
  CTQ27908.1 288 FYGLVGAGRTELMQALSGVSRPSS 311
                 56889**********988776664 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.1
      AAA_30  59 AkvLaeelgieastiakllkrlk.........grarlepgtllivDEagmv....dtkqlaallkaaekagakvilv 122
                 A++ a  l+++a +  + +++l          g++  ++ +++i DE        + + ++++++++ ++g  vi+v
  CTQ27908.1 379 ADEYASRLQVKAFSWRQPVETLSggnqqkvviGKWLATQPEVIILDEPTKGidigSKAAVHQFMSELVSQGLAVIMV 455
                 55555555555555555555554666677777555666669999999776544545556666666666666666665 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.012        12     244     269 ..      33      57 ..      30      62 .. 0.84
   2 ?    0.0   0.0      0.27   2.8e+02     331     352 ..     154     175 ..     145     199 .. 0.92
   3 ?    7.7   0.2    0.0012       1.3     383     420 ..     444     487 ..     433     501 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.012
                 SSEEEEEE-TTSSHHHHHHHHHHCCS CS
  ABC_ATPase 244 kGvtlIvGggfhGKsTLLeAlekGvy 269
                  +vt+++G +  GKsTL++ + +G+y
  CTQ27908.1  33 GKVTALIGENGAGKSTLVKVM-TGIY 57 
                 569***************965.5777 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.27
                 HHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 331 animealeagakllLiDEDtsA 352
                 ++i++al  +a+++++DE t+A
  CTQ27908.1 154 VAIARALAFDAQVVILDEPTAA 175
                 67999**************999 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0012
                 HHHHH--EEEEEESS-GCCTTT-SEEEEEET......TEEEE-H CS
  ABC_ATPase 383 lykklgvstilvvggsgdyldvAdtvilmee......ykpkdvt 420
                    + g+ +i+v++ + + + +Ad++i+m+e      y++ ++t
  CTQ27908.1 444 ELVSQGLAVIMVSSELPEVMGMADRIIVMHEglmvaeYRAGEAT 487
                 4456799**********************852222226666666 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00078      0.82       3      21 ..      37      55 ..      35      70 .. 0.86
   2 ?    1.3   0.0      0.33   3.5e+02       3      22 ..     287     306 ..     285     326 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00078
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                a++G   +GKStL++ +tg
  CTQ27908.1 37 ALIGENGAGKSTLVKVMTG 55
                89**************998 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.33
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 +++G   +G + L++al+g 
  CTQ27908.1 287 GFYGLVGAGRTELMQALSGV 306
                 799**************984 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00064      0.68      26     107 ..      35     168 ..      22     214 .. 0.53
   2 ?    1.1   0.0      0.43   4.5e+02      22      76 ..     283     330 ..     274     425 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00064
      AAA_16  26 lvllsGesGvGKsslvrellralekd......................ggiflrgkcdql.esaipy..sa.laqalareellrqlldeaesaeleawr 98 
                 ++ l+Ge G GKs+lv+     ++ +                      g+ ++ ++++ + e  ++    + + q+l  ++ll+ l+ +a  + +++  
  CTQ27908.1  35 VTALIGENGAGKSTLVKVMTGIYQPEegeilykaipihlptpesahkvGITAIHQETVLFdE--LSVseNIfVGQYL-YKGLLKTLDWPAMHRRANEIL 130
                 6789************8887666666555555555555555555554322223333333321..1112233234444.336666666665555555555 PP

      AAA_16  99 ekleeala.............................a 107
                 ++le ++                              +
  CTQ27908.1 131 TRLEVQIDpratlktlsiaqrhmvaiaralafdaqvvI 168
                 55555555444444444444444444333333333333 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.43
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqal 76 
                 g  e++ ++G  G G + l+++l   +++      +g+ + +++ +++ + a+a+
  CTQ27908.1 283 G--EILGFYGLVGAGRTELMQALS-GVSRP----SSGEIRLNGRTMRFHQPADAI 330
                 3..6888999999****9999998.45555....455555544444444444444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4    0.0012       1.3       2      96 ..      36     192 ..      35     204 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0012
      AAA_33   2 vllvGlpGsGKstlaerl...lkklgavllssdt...........................................................lrrrlf 38 
                 + l+G +G+GKstl++ +   ++++ +++l + +                                                           +++rl+
  CTQ27908.1  36 TALIGENGAGKSTLVKVMtgiYQPEEGEILYKAIpihlptpesahkvgitaihqetvlfdelsvsenifvgqylykgllktldwpamhrraneILTRLE 134
                 6789***********987665666666666665566666677888888888888888888888888888888888888888888875444444444444 PP

      AAA_33  39 gtdqqsktdytrvldrlyqilnelarkalsagrnvildat..nlsrrerarflklarrlg 96 
                 +  q +++   + l+ + +++ ++ar  +  ++ vild +   ls++e  +f ++++rl+
  CTQ27908.1 135 V--QIDPRATLKTLSIAQRHMVAIARALAFDAQVVILDEPtaALSQHEILEFYHIVERLK 192
                 4..333333445555577777777776666666688888855666888888888888766 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0012       1.2      28      50 ..      29      50 ..      19      55 .. 0.85
   2 ?   -0.6   0.1      0.81   8.5e+02     107     155 ..     147     176 ..     118     191 .. 0.58
   3 ?   -0.3   0.0      0.66   6.9e+02      61      97 ..     439     476 ..     430     495 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0012
      AAA_25 28 gllpagelallaGapgtGKttla 50
                +l+p g++++l+G  g+GK+tl+
  CTQ27908.1 29 DLWP-GKVTALIGENGAGKSTLV 50
                5555.9***************97 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.81
      AAA_25 107 dlagveslpLfakdrggtlltadvdaleaaieevegvrlvviDplsral 155
                 ++                 +++ + a+++a+    ++++v++D  ++al
  CTQ27908.1 147 SI-----------------AQRHMVAIARALAF--DAQVVILDEPTAAL 176
                 33.................23334344444433..67777777666655 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.66
      AAA_25  61 kpwlgpvapeqgkVlyvsaEdsed.elrrRlravgeal 97 
                 +++  +++++  +V++vs E +e  +++ R+  ++e l
  CTQ27908.1 439 HQFMSELVSQGLAVIMVSSELPEVmGMADRIIVMHEGL 476
                 56666889999*********997657888888777665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00063      0.66      57      80 ..      37      60 ..      22      98 .. 0.89
   2 ?   -1.4   0.0         1   1.1e+03      65      90 ..     433     458 ..     428     474 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00063
      DUF815 57 LLwGarGtGKSslvkallneyaee 80
                 L+G+ G+GKS+lvk ++  y+ e
  CTQ27908.1 37 ALIGENGAGKSTLVKVMTGIYQPE 60
                599*************99888766 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
      DUF815  65 GKSslvkallneyaeegLrlieveke 90 
                 G  + v+  ++e+ ++gL++i v+ e
  CTQ27908.1 433 GSKAAVHQFMSELVSQGLAVIMVSSE 458
                 56678999999**********99875 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00061      0.65      24      56 ..      32      64 ..      23      76 .. 0.87
   2 ?   -1.7   0.0      0.93   9.8e+02      31      54 ..     289     312 ..     279     314 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00061
        DLIC 24 sgksvlvlGedgsGkttliaklqGveeekkGrG 56
                 gk   ++Ge+g+Gk+tl+  + G+ ++  G  
  CTQ27908.1 32 PGKVTALIGENGAGKSTLVKVMTGIYQPEEGEI 64
                6888999******************99999875 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.93
        DLIC  31 lGedgsGkttliaklqGveeekkG 54 
                  G  g+G+t l+  l Gv  +  G
  CTQ27908.1 289 YGLVGAGRTELMQALSGVSRPSSG 312
                 57789*************988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3552.01
//
Query:       CTQ27909.1  [L=328]
Description: Rhamnose ABC transporter, periplasmic rhamnose-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-60  203.3  10.3    5.8e-60  203.0  10.3    1.0  1  Peripla_BP_4  Periplasmic binding protein domain
    6.5e-07   29.0   0.3    1.4e-06   28.0   0.3    1.5  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
  ------ inclusion threshold ------
      0.083   11.9   0.1       0.21   10.6   0.0    1.6  2  AGT           DNA alpha-glucosyltransferase


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.0  10.3   9.7e-64   5.8e-60       1     256 [.      26     285 ..      26     287 .. 0.97

  Alignments for each domain:
  == domain 1  score: 203.0 bits;  conditional E-value: 9.7e-64
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEE.ECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-C CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvv.gdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsger 96 
                   i++v k+ +n+ff+aa+ g+++aakelg+ +++  g++ ++a++Q+++++ +ia+gvd+i+++++d++a+ p+lkka+++GI+Vv++ds +ap+g++
    CTQ27909.1  26 IALVAKSLGNGFFEAANVGAQQAAKELGDVKVIYtGPTTTTAEAQIDVLNGLIAQGVDAIAISANDPDAVVPVLKKAMQRGIKVVSWDSGVAPAGRQ 122
                   799************************99888888************************************************************** PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH....EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEE CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggk...kgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanp.ldgila 189
                   ++    +n  +Ge+  +++a++l +    kg+v++l+++p+++n++ +ie ++kvl +yp++++v++ a++++  +k+++++  ll+ +p l++i++
    CTQ27909.1 123 IHLNPSNNALIGETNVKLAADALQALnveKGEVAVLSATPTSTNQNIWIEEMKKVLPQYPSVQLVTV-AYGDDLSDKSYREAVGLLKSYPdLKVIVS 218
                   **********************9987999************************************96.555****************8855****** PP

                   SSCCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT CS
  Peripla_BP_4 190 andgmaegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkG 256
                   +++++  +a++a++++g+ gkv vtg ++++e+  aik+G  +++  ++p +lgyaa++la +l+kG
    CTQ27909.1 219 PSSVGIVAAAQAVKDQGKIGKVYVTGLGLPSEMAGAIKSGASKSFAIWNPIDLGYAATYLADDLVKG 285
                   *****************************************************************99 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.3   2.3e-10   1.4e-06       3     204 ..      25     236 ..      23     246 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.3e-10
                   EEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHH...HTT-SEEEEE-S-GG..HHHHHHHHHHT-EEEEESS--B-T. CS
  Peripla_BP_1   3 klglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllk...akgidgliiatsdts..fdditakaesgipvialedaidap. 92 
                   k+ lv ++l + ff   + g+++aake+g dv+++ +g    +a ++id l+   a+g+d++ i   d++  ++ +++  + gi+v+  +   +ap 
    CTQ27909.1  25 KIALVAKSLGNGFFEAANVGAQQAAKELG-DVKVIYTGPTTTTAeAQIDVLNgliAQGVDAIAISANDPDavVPVLKKAMQRGIKVVSWDSG-VAPa 119
                   89999***********************9.99999999999888888887654449**********9999855666665555******9887.7774 PP

                   .TTS-EEEE-HHHHHH....HHHHHHHHHHHHHT.GEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SE CS
  Peripla_BP_1  93 .dgvPcvipddtqage....estqkLiaeghkrp.iallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeida 183
                     ++ +   ++  +ge     +   L a   +++ +a+l+++  +  ++   +     l +    v+ v va g++   + +  +  ll+s P++++
    CTQ27909.1 120 gRQIHLNPSNNALIGEtnvkLAADALQALNVEKGeVAVLSATPTSTNQNIWIEEMKKVLPQYP-SVQLVTVAYGDDLSDKSYREAVGLLKSYPDLKV 215
                   633443333333333311113445566666677788999887665555444434444444442.6999***********9999999*********** PP

                   EE-SSHHHHHHHHHHHHHTT. CS
  Peripla_BP_1 184 ivaindeaalGavlalkkeGr 204
                   iv  +    + a++a+k +G+
    CTQ27909.1 216 IVSPSSVGIVAAAQAVKDQGK 236
                   **9999988999999999994 PP

>> AGT  DNA alpha-glucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.25   1.5e+03      63     109 ..      54     100 ..      47     109 .. 0.77
   2 ?   10.6   0.0   3.6e-05      0.21      50     131 ..     142     223 ..     132     231 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.25
                 SEEEEEE--BTTS-HHHHHHHHHHHHCS-TTSEEEEEE---SHHHHT CS
         AGT  63 diliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsvlslr 109
                 d+ +i + p+t+  ea i+  + l+ +   +i +   + d  v  l+
  CTQ27909.1  54 DVKVIYTGPTTTTAEAQIDVLNGLIAQGVDAIAISANDPDAVVPVLK 100
                 78899999999999999999988888777777777666666665555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 3.6e-05
                 THHHHHHHHHTSSSEEEEEE--BTTS-HHHHHHHHHHHHCS-TTSEE..EEEE---SHHHHTTBSSHHHHHHH-SEEEES-TTS CS
         AGT  50 keydkalklvndcdiliinsvpatsvqeatinnykklldnikpsirv..vvyqhdhsvlslrrnlgleetvrradvifshsdng 131
                  +  +al+ v+  ++ ++ + p+++ q+  i++ kk+l +  ps+++  v y  d s  s r  +gl ++     vi+s s  g
  CTQ27909.1 142 ADALQALN-VEKGEVAVLSATPTSTNQNIWIEEMKKVLPQY-PSVQLvtVAYGDDLSDKSYREAVGLLKSYPDLKVIVSPSSVG 223
                 45555554.6778999**********************875.777651257999***************999999999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2587.84
//
Query:       CTQ27910.1  [L=276]
Description: rhamnulose-1-phosphate aldolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-35  123.1   0.0    1.5e-35  122.8   0.0    1.1  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   0.0   8.4e-40   1.5e-35       2     185 ..      12     238 ..      11     239 .. 0.90

  Alignments for each domain:
  == domain 1  score: 122.8 bits;  conditional E-value: 8.4e-40
                  HHHHHHHHHHHTTSSCTTBCEEEEEE.........................T..STTEEEEEBTSS-GGGHT...GGGEEEEETTSC....EEEECEC CS
  Aldolase_II   2 elaeasrllarrglvegtgGniSvrv.........................p..eedsflitpsgvdfeelt...aedlvvvdldsg....evvegke 65 
                   +++a+ + + +g++e++gGn+++r+                         p    + f++t+sg+ f++++   a++l vv++ds+     +++g +
   CTQ27910.1  12 GMIKATSDAWLKGWDERNGGNLTLRLdeadiepyaadfhakpryialsqpmPtlANQPFIVTGSGKFFRNVQldpAANLGVVKVDSDgagyHILWGLT 109
                  699**********************7799************9999999877265567888**************88***9999964447777888888 PP

                  SSSTB-TTHHHHHHHHHH.....-TT-SEEEEE--HHHHHHHTCC......STSCHCCSSHHHHC.HSSSEEEEES-SSTTCHHHHHHHHHHHHHS-S CS
  Aldolase_II  66 kggkpssetplHlaiyka.....rpdaravvHtHspaavalsala......gkeglppltqeaaklllgdevpvipyaapgteelgealaealkedak 152
                  +++ p+se+p H+ ++++       + r+++H+H+++++al++++      +++ l++ ++e    ++ d+v+++p++ pgt+e+g+a+ae+++ +++
   CTQ27910.1 110 EDAVPTSELPAHFLSHSErikltGGKDRVIMHCHATNLIALTYVLenhsdlFTRKLWEGSTECLV-VFPDGVGILPWMVPGTDEIGQATAETMQ-KHS 205
                  8999**************888887889***************98899888866778777777777.778************************8.779 PP

                  EEEETTTEEEEEESSHHHHHHHHHHHHHHHHHH CS
  Aldolase_II 153 avllrnHGlltvGetleeAvalaetleeaaeiq 185
                  +vl+  HG++  G+tl+e++ l+ t+e++ae+ 
   CTQ27910.1 206 LVLWPFHGVFGSGPTLDETFGLIDTAEKSAEVL 238
                  ******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2165.88
//
Query:       CTQ27911.1  [L=419]
Description: L-rhamnose isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   9.3e-235  779.4   0.0   1.1e-234  779.2   0.0    1.0  1  RhaA            L-rhamnose isomerase (RhaA)
  ------ inclusion threshold ------
       0.18   12.0   0.3         16    5.7   0.0    3.1  3  FeS_assembly_P  Iron-sulfur cluster assembly protein


Domain annotation for each model (and alignments):
>> RhaA  L-rhamnose isomerase (RhaA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  779.2   0.0  1.2e-238  1.1e-234       1     417 []       3     418 ..       3     418 .. 1.00

  Alignments for each domain:
  == domain 1  score: 779.2 bits;  conditional E-value: 1.2e-238
                 HHHHHHHHHHHHHHHTTT--HHHHHHHHTT--EEEEGGGCTTT-TSSSSSS---SS------SS---SSHHHHHHHHHHHHCTSSS-EEEEEEGGG--- CS
        RhaA   1 telkkkyelakkryekvgidveealkklkqvpisihcwqgddvegfevnegelsggidvtgnypgkaktpeelradlekalslipgkkrvnlhaiyvet 99 
                 t+l++++e ak+ry++vg+dveeal++l+++p+s+hcwqgddv gfe++ g+l+ggi++tgnypgka+++eelradle+alslipg kr+nlhaiy+e+
  CTQ27911.1   3 TQLEQAWEIAKQRYAAVGVDVEEALRQLDRLPVSMHCWQGDDVAGFENPAGSLTGGIQATGNYPGKARNAEELRADLEQALSLIPGPKRLNLHAIYLES 101
                 589************************************************************************************************ PP

                 SSS---GGG--GGGGHHHHHHHHHCT-EEEEE---SSSGGGTTS-STT-SSHHHHHHHHHHHHHHHHHHHHHHHHHTS-EEEEEE---EESS--S-SHH CS
        RhaA 100 dgeaverdeiepkhfenwvkwakekglgldfnptlfshekakdgltlahpdkeirdfwiehciasrkiseyfgkelgtpsltniwipdglkdipsdrlt 198
                 d   v r+ei+p+hf+nwv wak+++lgldfnp++fsh++++dg+tl+h+++eir+fwi+hc+asr++s+yfg++lgtps++niw+pdg+kdi++dr++
  CTQ27911.1 102 D-APVARNEIKPEHFKNWVTWAKANKLGLDFNPSCFSHPLSADGFTLSHANDEIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWVPDGMKDITVDRFA 199
                 *.9************************************************************************************************ PP

                 HHHHHHHHHHHHTCS---TTTEEEEEE--S-BTTBSSEESS-HHHHHHHHHHCT-EEEEETTSSSTT--CHHHHHHHCTTCS-EEEEE-B-SSSS--B- CS
        RhaA 199 prkrlkesldevfaeeldekynldavesklfglgsesyvvgshefylgyalkrdklllldaghfhptevvsnkisslllysdklllhvsrpvrwdsdhv 297
                 pr+rl ++ldev++e+ld+++++davesklfg+g+esy+vgs+efy+gya++r+++l+ldaghfhptev+s+kis+++ly ++lllhvsrpvrwdsdhv
  CTQ27911.1 200 PRQRLLNALDEVISEKLDPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYIPRLLLHVSRPVRWDSDHV 298
                 *************************************************************************************************** PP

                 --SSHHHHHHHHHHHHTTTTTTEEEEE----TSS-HHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHCCT-HHHHHHHHHHHCCSSHHHHHHHHHHHTTS CS
        RhaA 298 vilddelreialeivrndlldkvkigldffdasinriaawvigtrnvkkallkalleptaelkkleeegdyterlalleelktypfgavwdeycermdv 396
                 v+ldde+++ia+ei+r++l+d+v+igldffdasinriaawvigtrn+kkall+allepta+l++le++gdyt+rlallee+k++p++a+w++yc+r+d+
  CTQ27911.1 299 VLLDDETQAIASEIIRHNLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAQLRQLENDGDYTARLALLEEQKSLPWQAIWEMYCQRHDT 397
                 *************************************************************************************************** PP

                 -STTTHHHHHHHHHHHTCCC- CS
        RhaA 397 pvgeewlkevkayekevllkr 417
                 p+g++wl++v+aye+ vl++r
  CTQ27911.1 398 PAGSQWLDSVRAYENAVLSQR 418
                 *******************98 PP

>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.024   2.2e+02      46      65 ..      12      31 ..      10      35 .. 0.87
   2 ?    5.7   0.0    0.0018        16      43      66 ..      64      88 ..      58      91 .. 0.89
   3 ?   -0.5   0.0      0.15   1.4e+03       2      24 ..     202     228 ..     201     230 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.024
                    T-TTHHHHHHHHHHHHC.ST CS
  FeS_assembly_P 46 acslaeairadaeaalralp 65
                    a+++++a+  d+e+alr+l 
      CTQ27911.1 12 AKQRYAAVGVDVEEALRQLD 31
                    6789999**********986 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0018
                    SSTT-T.THHHHHHHHHHHHC.STT CS
  FeS_assembly_P 43 typacs.laeairadaeaalralpg 66
                     yp+++  ae++rad+e+al  +pg
      CTQ27911.1 64 NYPGKArNAEELRADLEQALSLIPG 88
                    699***9**************9999 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.15
                     HHHHHHHTT-B....-TTTSSBCCCCT CS
  FeS_assembly_P   2 eavlaaLrtVt....DPelgvdlvslg 24 
                     ++ l+aL++V+    DP +++d v+++
      CTQ27911.1 202 QRLLNALDEVIseklDPAHHIDAVESK 228
                     677888888864444888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2991.46
//
Query:       CTQ27912.1  [L=488]
Description: rhamnulokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-29  103.8   0.0    1.4e-29  103.4   0.0    1.2  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
    1.2e-26   93.7   0.4    3.4e-26   92.2   0.1    1.8  2  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   1.6e-33   1.4e-29       3     244 ..       7     243 ..       5     244 .. 0.89

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 1.6e-33
                 EEEEEESSEEEEEEEE.TTS..-EEEEEEEE--EB-SST.T--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE- CS
      FGGY_N   3 lglDcGttstkaivld.ekg..kvvasaqaelelsspke.gwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynail 97 
                 +++D+G++s ++++ + + g   +  ++   ++ s +k  g   +d++ +   + + ++kv+eq       i  Igi + +++ vllDk+++ ++  i+
  CTQ27912.1   7 VAVDLGASSGRVMLASyQPGprALTLREIHRFTNSLQKVdGFDCWDVDSLEGEIRRGLEKVCEQG----ILIDSIGIDTWGVDYVLLDKQGQRVGLPIS 101
                 899***********99766632344445555555555555999*********************9....7899************************** PP

                 TT--TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-HHHHHHT CS
      FGGY_N  98 wkdrrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnikklewdeellail 196
                 + d rt++  ++ +++++  ++y ++g+   +++tl+ l+ l e++pe + +++  lli dy  +rLtg+   ++tna +++++ni++  wde ll+++
  CTQ27912.1 102 YRDDRTQGLLRHAEAQLGRAEIYRRSGIQFLPFNTLYQLRALVEQQPELVSQAAHALLIPDYFSFRLTGNLNWEYTNATTTQMVNINSDSWDETLLNWT 200
                 *************************************************************************************************** PP

                 T--GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEE.EEEHHHHHHH CS
      FGGY_N 197 gipeelLPklvesseiigelkpelaaklGlkegvpvvg.gggDqqaaal 244
                 g p + + k  +++++ig+         G  +++pvv+ + +D+++a++
  CTQ27912.1 201 GAPLAWFGKPTHPGNVIGHWICP----QG--NRIPVVAvASHDTASAVI 243
                 *************9999986543....44..466766524578887765 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.17   1.6e+03      97     146 ..      97     147 ..      92     157 .. 0.79
   2 !   92.2   0.1   3.8e-30   3.4e-26       1     196 [.     253     439 ..     253     441 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.17
      FGGY_C  97 glrapywdpdargtitglsssttlahiar.Aaleavalqlrailealekds 146
                 gl   y d+++ g ++  +++ + a+i+r + ++++ + + + l+al +++
  CTQ27912.1  97 GLPISYRDDRTQGLLRHAEAQLGRAEIYRrSGIQFLPFNTLYQLRALVEQQ 147
                 666778999999999999999999999963778888888888888887764 PP

  == domain 2  score: 92.2 bits;  conditional E-value: 3.8e-30
      FGGY_C   1 akvslGTssflllvgtkpvisehglltpvagedgkpeyalegsiavagslva.wlldnlglreeirdageveeslaelaaaeavadaggvvfvpafsgl 98 
                 a++s GT+s++++++ +p     +l ++++     +e ++eg  +v++++++ wll+       + ++++v ++l+ l a+ a+ +a +++++++   +
  CTQ27912.1 253 AYLSSGTWSLMGFESLTPYTCDAALQANIT-----NEGGAEGRYRVLKNIMGlWLLQR------VLKEQNV-SDLQGLIARTAALPACRFIIDCNDDRF 339
                 6899*********99999999*********.....88*********************......7899999.999999999****************** PP

      FGGY_C  99 rapywdpdargti...tglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilA 194
                  +p  +++   +    +g+  +++ a++ar+++ ++al ++ +l++l++ +g+p+++l+++GGg++n ll+ql+Ad++g+ V ++++ ea  lG++ ++
  CTQ27912.1 340 INPASMSAEIQAAcrdAGQPVPESDAELARCIFDSLALLYARVLNELAALRGHPFSQLHIVGGGCQNTLLNQLCADACGIAV-VAGPIEASTLGNIGIQ 437
                 ***8777766666899*****************************************************************6.888899*****99888 PP

      FGGY_C 195 av 196
                  +
  CTQ27912.1 438 LM 439
                 77 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3749.08
//
Query:       CTQ27913.1  [L=278]
Description: DNA-binding transcriptional activator, L-rhamnose-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-26   92.1   0.7    4.6e-26   90.9   0.7    1.7  1  HTH_18        Helix-turn-helix domain
    7.9e-23   80.9   1.2    7.9e-23   80.9   1.2    1.8  2  AraC_binding  AraC-like ligand binding domain
    5.4e-22   77.4   0.1    1.2e-10   41.2   0.0    2.3  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
    2.7e-05   23.8   1.5      5e-05   22.9   1.5    1.4  1  Cupin_2       Cupin domain
  ------ inclusion threshold ------
      0.014   14.3   0.1      0.018   14.0   0.1    1.1  1  AAA_34        P-loop containing NTP hydrolase pore-1


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.7   1.3e-29   4.6e-26       1      80 [.     193     271 ..     193     272 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 1.3e-29
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +aa++ +s rtL+r++k+++gltp++yl+r+Rl +Ar+lL+ +++ sv++iA+++GF+d ++Fs+ fr+ f  +P++ r+
  CTQ27913.1 193 VAAQFSLSLRTLHRQLKQQTGLTPQRYLNRVRLMKARHLLR-HSDESVTDIAYRCGFGDSNHFSTLFRREFDWSPRDIRQ 271
                 599***********************************996.5**********************************997 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   1.2   2.2e-26   7.9e-23       4     136 .]      16     154 ..      13     154 .. 0.95
   2 ?   -1.2   0.1      0.47   1.7e+03      83     119 ..     175     211 ..     169     228 .. 0.64

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 2.2e-26
                   EEEEETTSTT-SEEEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG---EEETTEEE... CS
  AraC_binding   4 iegieagypdhsfpphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegelleriledssilagapllpa. 99 
                    ++ie + p+ +fp+h+hd+++i++v++G+g++ +ng+ y +g+G++++++ ++ H ye  +  ++ ++++ +++  ++r+l++ s+l +++  ++ 
    CTQ27913.1  16 TVAIEPRLPQSAFPEHHHDFHEIVIVEQGSGIHVFNGQPYTIGGGSVCFIRDHDRHLYEHTD--NLCLTNVLYRAPDAFRFLAGVSQLLPQEQEGNy 110
                   578999********************************************************..9*************************999888* PP

                   ...E---TTTHHHHHHHHHHH....HHHHT-SSTTHHHHHHHHH CS
  AraC_binding 100 ...lledeelaqllralfrll....eetrsgddllleallyell 136
                      ++ +++++q+ r++++++    + t+ ++ + +e l+++ll
    CTQ27913.1 111 pshWRVNQTVLQQVRHIVAQIeavgSDTDTHAVASREILFMQLL 154
                   *********************99998899999999999999987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.47
                   GGGG---EEETTEEE..E---TTTHHHHHHHHHHH.HH CS
  AraC_binding  83 riledssilagapllpalledeelaqllralfrll.ee 119
                   ++l++ +++ ++++   +    +++  lr l+r+l ++
    CTQ27913.1 175 QLLAWLEDHFAQEICW-EEVAAQFSLSLRTLHRQLkQQ 211
                   5555555554443332.455567777888888888433 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   5.5e-12     2e-08       1      42 []     180     221 ..     180     221 .. 0.97
   2 !   41.2   0.0   3.4e-14   1.2e-10       1      42 []     232     271 ..     232     271 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 5.5e-12
                 HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 L++++++++ +e++A+++ +S ++++r++k++tG tP+ y++
  CTQ27913.1 180 LEDHFAQEICWEEVAAQFSLSLRTLHRQLKQQTGLTPQRYLN 221
                 799*************************************96 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 3.4e-14
                 HHCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 Lr   +++ +++diA  +gf ++++Fs+lF++e++++P+ +r+
  CTQ27913.1 232 LR---HSDESVTDIAYRCGFgDSNHFSTLFRREFDWSPRDIRQ 271
                 67...899*******************************9996 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   1.5   1.4e-08     5e-05       7      61 ..      24      77 ..      22      84 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.4e-08
                TTEEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-S CS
     Cupin_2  7 pGesapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtg 61
                p+  +p+h+H+ + e+++V +G g    +g++++++ G + ++  + +H ++ t 
  CTQ27913.1 24 PQSAFPEHHHDFH-EIVIVEQGSGIHVFNGQPYTIGGGSVCFIRDHDRHLYEHTD 77
                66789********.***********************************998876 PP

>> AAA_34  P-loop containing NTP hydrolase pore-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   4.9e-06     0.018     143     191 ..     156     203 ..     116     244 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.9e-06
      AAA_34 143 FvtYstliseskkkkksrleqlveWlgedfdGvivfDEchkaknlakse 191
                 ++  s+l +e++++ ++rl+ql++Wl+++f   i++ E  +  +l  + 
  CTQ27913.1 156 LLRKSSLAEEATNN-DARLNQLLAWLEDHFAQEICWEEVAAQFSLSLRT 203
                 33344555555544.6********************9988777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2202.17
//
Query:       CTQ27914.1  [L=281]
Description: DNA-binding transcriptional activator, L-rhamnose-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-22   78.3   0.1    9.7e-22   77.0   0.1    1.7  1  HTH_18        Helix-turn-helix domain
    3.5e-20   72.3   1.6    4.9e-20   71.8   0.2    1.8  2  AraC_binding  AraC-like ligand binding domain
    1.3e-18   66.6   0.1    1.8e-11   43.8   0.0    2.4  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
    4.4e-06   26.3   0.0    8.9e-06   25.3   0.0    1.4  1  Cupin_2       Cupin domain
  ------ inclusion threshold ------
      0.038   14.2   0.0      0.067   13.4   0.0    1.4  1  ARD           ARD/ARD' family


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.1   2.7e-25   9.7e-22       2      81 .]     198     276 ..     197     276 .. 0.95

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 2.7e-25
                 HHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHHH CS
      HTH_18   2 aaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrrr 81 
                 +++ g s+r L+++f++++g+t  +ylr+lR+++A  lL ++t++ + +iA+++GF+d ++Fs  f +  g++P+++r+r
  CTQ27914.1 198 CEQEGGSERALRQQFRQQTGMTINHYLRQLRICHAQYLL-QHTERLIGDIAMQCGFEDSNYFSVVFSREIGMSPGQWRQR 276
                 567788*******************************98.67************************************97 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.2   1.4e-23   4.9e-20       8     128 ..      22     145 ..      18     155 .. 0.88
   2 ?   -0.7   0.1      0.34   1.2e+03     124     124 ..     189     189 ..     146     245 .. 0.60

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 1.4e-23
                   ETTSTT-SEEEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG---EEETTEEE.....E- CS
  AraC_binding   8 eagypdhsfpphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegelleriledssilagapllpa...ll 101
                   + +yp+ +f++h+h+++++++v++G+g + ln+r ++++ Gdlf ++ ++ H+y+s +  ++ ++++ + +e l+   ++++ ++g  + p    ++
    CTQ27914.1  22 ADRYPQNVFAEHTHEFCELVLVWRGNGLHVLNDRPWRITRGDLFYIRAEDKHSYASVN--DLVLQNIIYCPERLQLNFDWAGAIPGLFGTPWkphWR 116
                   789*******************************************************..**************************8776669**** PP

                   --TTTHHHHHHHHHHH..HHHHT-SSTTH CS
  AraC_binding 102 edeelaqllralfrll..eetrsgddlll 128
                   + ++ +++ r+++++l  e +r+ ++  +
    CTQ27914.1 117 MGSTGMAQARQVISQLehECARRDAQGNA 145
                   ****************6633333333333 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.34
                   S CS
  AraC_binding 124 d 124
                   +
    CTQ27914.1 189 S 189
                   1 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   9.4e-08   0.00034       2      42 .]     185     225 ..     184     225 .. 0.91
   2 !   43.8   0.0   4.9e-15   1.8e-11       6      42 .]     238     275 ..     236     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 9.4e-08
                 HCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   2 renlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 + +ls+++ +e+++++ g S++ ++++F+++tGmt++ y++
  CTQ27914.1 185 AASLSRPFVLERFCEQEGGSERALRQQFRQQTGMTINHYLR 225
                 66788899999*************************99985 PP

  == domain 2  score: 43.8 bits;  conditional E-value: 4.9e-15
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 +t+  i+diA+++gf +++yFs +F++e Gm+P q+r+
  CTQ27914.1 238 HTERLIGDIAMQCGFeDSNYFSVVFSREIGMSPGQWRQ 275
                 666779*******************************7 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.5e-09   8.9e-06      10      60 ..      29      78 ..      23      85 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2.5e-09
                EEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE- CS
     Cupin_2 10 sapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNt 60
                ++ +h+H+   e++ V +G g   ++++++++++Gd++y+ a   H ++  
  CTQ27914.1 29 VFAEHTHEFC-ELVLVWRGNGLHVLNDRPWRITRGDLFYIRAEDKHSYASV 78
                6789*****9.************************************9865 PP

>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.9e-05     0.067      78     133 ..      23      73 ..       7      80 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
         ARD  78 deklekFfeEhlhedeeirliveGtgyFdvrskdeawirvlvekGDLivlPagiyh 133
                 d   ++ f Eh+he+ e+ l+  G+g+ ++++  + w    +++GDL  + a  +h
  CTQ27914.1  23 DRYPQNVFAEHTHEFCELVLVWRGNGLHVLND--RPWR---ITRGDLFYIRAEDKH 73 
                 6667899**********************975..5676...889999887666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2181.89
//
Query:       CTQ27915.1  [L=344]
Description: L-rhamnose:proton symporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-214  712.2  33.1   1.1e-214  712.0  33.1    1.0  1  RhaT      L-rhamnose-proton symport protein (RhaT)


Domain annotation for each model (and alignments):
>> RhaT  L-rhamnose-proton symport protein (RhaT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  712.0  33.1  6.3e-219  1.1e-214       1     344 []       1     344 []       1     344 [] 1.00

  Alignments for each domain:
  == domain 1  score: 712.0 bits;  conditional E-value: 6.3e-219
        RhaT   1 msnaiilgiiwhlvgaasaacfyapfkqvkkwswetmwsvgglvswlilpwtvsalllpdfwayygsfslatllpvflfgamwgigninygltmrylgm 99 
                 m+ ai++gi+whl+gaasaacfyapfk+vk+wswetmwsvgg+vswlilpw++sa llpdfwayy sfs +tllpvflfgamwgigninygltmrylgm
  CTQ27915.1   1 MNHAITMGIFWHLIGAASAACFYAPFKKVKHWSWETMWSVGGIVSWLILPWAISATLLPDFWAYYRSFSASTLLPVFLFGAMWGIGNINYGLTMRYLGM 99 
                 899************************************************************************************************ PP

        RhaT 100 smgigiaigitlivgtlmtpilqgrfdvllgteggrmtllgvfvaligvaivsragllkerkmgikaeefnlkkglllavmcgifsagmsfamdaakpm 198
                 smgigiaigitlivgtlmtpi++g+f vl++t+gg+mtllgv+va+igv+iv+rag+lkerkmgikaeefnlkkglllavmcgifsagmsfam+aakpm
  CTQ27915.1 100 SMGIGIAIGITLIVGTLMTPIINGQFAVLMHTQGGQMTLLGVLVAVIGVGIVTRAGQLKERKMGIKAEEFNLKKGLLLAVMCGIFSAGMSFAMNAAKPM 198
                 *************************************************************************************************** PP

        RhaT 199 heaaaalgvdslyvalpsyvvimgggalvnlsycfirlaklknlsvkadfslakpllisnillsalaglmwylqfffyawghakipaqydymswmlhms 297
                 h+aaaalgvd+ly alpsyvvimgggalvnl++cfirlak+knlsvkadfslakpl+isn+llsal+glmwylqfffyawgha ipaqydymswmlhms
  CTQ27915.1 199 HDAAAALGVDPLYAALPSYVVIMGGGALVNLGFCFIRLAKVKNLSVKADFSLAKPLIISNLLLSALGGLMWYLQFFFYAWGHASIPAQYDYMSWMLHMS 297
                 *************************************************************************************************** PP

        RhaT 298 fyvlcgglvglllkewknatkkpvavlslgclviilaanivglgmaa 344
                 fyvlcgg+vgl+lkew+na+++pv+vlslgc+vii+aanivglgma+
  CTQ27915.1 298 FYVLCGGVVGLVLKEWNNAGRRPVSVLSLGCVVIIIAANIVGLGMAS 344
                 *********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2806.41
//
Query:       CTQ27916.1  [L=109]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 904.05
//
Query:       CTQ27917.1  [L=206]
Description: superoxide dismutase, Mn [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-40  137.5   0.2    3.5e-40  136.3   0.0    1.6  2  Sod_Fe_C    Iron/manganese superoxide dismutases, C-terminal 
    8.2e-34  115.9   2.5    1.3e-33  115.3   2.5    1.3  1  Sod_Fe_N    Iron/manganese superoxide dismutases, alpha-hairp
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.16   11.8   0.0    1.2  1  Spore_YpjB  Sporulation protein YpjB (SpoYpjB)


Domain annotation for each model (and alignments):
>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.56   3.3e+03      44      60 ..      22      38 ..      11      46 .. 0.67
   2 !  136.3   0.0   5.9e-44   3.5e-40       2     102 .]      96     201 ..      95     201 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.56
                TEEEEEEEETTTBGGGG CS
    Sod_Fe_C 44 kkLeivttknqdnplvk 60
                +++ei +tk++++ + +
  CTQ27917.1 22 QTMEIHHTKHHQTYVNN 38
                46777777777765554 PP

  == domain 2  score: 136.3 bits;  conditional E-value: 5.9e-44
                 -HHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETTTEEEEEEEETTTBGGGGTTC......EEEEEE-SGGGTHHHHTT-HHHHHHHHGGGB CS
    Sod_Fe_C   2 sgelaeaieedfgslekfkkefkaaalavfgsGwawLvldkkkkLeivttknqdnplvkeak......plLalDvwehAYyldyqnkradYieafwnvv 94 
                 +g+l++aie+dfgs+e+fk+ef++aa+++fgsGwawLvl+ + kL++v+t+nqd+pl+ ea       p+++lDvwehAYyl++qn+r+dYi+afw+vv
  CTQ27917.1  96 QGDLKAAIERDFGSVENFKAEFEKAAATRFGSGWAWLVLKGD-KLAVVSTANQDSPLMGEAIsgasgfPIIGLDVWEHAYYLKFQNRRPDYIKAFWDVV 193
                 589************************************987.***************877789999******************************** PP

                 BHHHHHHH CS
    Sod_Fe_C  95 nWkeveer 102
                 nW+e+++r
  CTQ27917.1 194 NWDEAAAR 201
                 ***99876 PP

>> Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   2.5   2.2e-37   1.3e-33       1      81 [.       2      89 ..       2      90 .. 0.97

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 2.2e-37
                S------SS-TTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHHCH.HHHCHCCHHHHHH......HHHHHHHHHHHHHHHHHHHHHTB CS
    Sod_Fe_N  1 kyeLpeLpYaydaLePhisketlelHhdkHhktYvnnlNkalekl.eeakkkleelvlk......klekalrnnagghvnHslfwknl 81
                +y+Lp+LpYaydaLePh++k+t+e+Hh+kHh+tYvnn+N+ale+l e+a+ ++eel++k      ++++ lrnnaggh+nHslfwk l
  CTQ27917.1  2 SYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLpEFANLSAEELITKldqlpaDKKTVLRNNAGGHANHSLFWKGL 89
                59*******************************************99**********99*****9999*****************987 PP

>> Spore_YpjB  Sporulation protein YpjB (SpoYpjB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.7e-05      0.16     138     208 ..      23      94 ..       7      99 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.7e-05
  Spore_YpjB 138 slkidleeeelqrvdskisvleke.rfqqvsesekreeLeeleedlqalFdevkedeadpSllwviisigsi 208
                  ++i+ ++++ + v+++ + le++ +f ++s++e   +L++l +d +++  +    +a+ Sl+w  + +g  
  CTQ27917.1  23 TMEIHHTKHHQTYVNNANAALESLpEFANLSAEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKTGTT 94 
                 6899*******************99***************************************99999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1575.28
//
Query:       CTQ27918.1  [L=224]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-21   75.5   0.0    5.3e-21   75.0   0.0    1.2  1  MOSC          MOSC domain
    1.7e-12   47.0   0.1    2.7e-12   46.3   0.1    1.3  1  3-alpha       3-alpha domain
  ------ inclusion threshold ------
      0.024   13.6   0.0      0.032   13.2   0.0    1.1  1  7TM_GPCR_Srt  Serpentine type 7TM GPCR chemoreceptor Srt


Domain annotation for each model (and alignments):
>> MOSC  MOSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   8.9e-25   5.3e-21       2     128 ..      47     158 ..      46     161 .. 0.90

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 8.9e-25
                 XX---GGGGSEEEEETHHHHHHHHHS..GGGGG-STTTT--SEEE.S-.......-TTT-BTT-E.EEETT.....................EE----T CS
        MOSC   2 rkihggdekavllisresldalneelkegrsveldpgrfreNivv.ggaaafeEdtwkelrigdrrfrlggacsRcqmvnvdqetga.....rprepck 94 
                 +kihgg+++a+++++re+++++ ++++++  +++ + +f+eN+++ g+       t++++ igd  fr+g+               a     +pr+pc+
  CTQ27918.1  47 KKIHGGPDRALCHYPREHYADWIRDFPQQS-ERFCAPAFGENLSTtGL-------TEQNVYIGDI-FRWGE---------------AliqvtQPRSPCF 121
                 79************************7776.79999*********888.......**********.****9...............223445******* PP

                 HHHH.H..TTHHHHHHHHT---EEEEEEE-EEEETTS CS
        MOSC  95 tlak.f..rrvdkrvkgkgrfGvylrvleegtvrvGd 128
                 +l+  f   ++++ ++++g +G+++rv+++g v+ + 
  CTQ27918.1 122 KLNFhFaiNDMAQLMQNSGKTGWLYRVIAGGQVSSDA 158
                 ***977*************************998765 PP

>> 3-alpha  3-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.1   4.5e-16   2.7e-12       1      44 []     169     212 ..     169     212 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 4.5e-16
                 -BHHHHHHHHHTS---HHHHHHHHTSTT--HHHHHHHHHHHHHS CS
     3-alpha   1 wtVarvnallyhdkldrealrrllelpaLspsWrktfekRLesg 44 
                 ++V+++ a+++++++d ++++rll++++Ls sW +t++kR  sg
  CTQ27918.1 169 VSVHEAGAIAWQMPFDDDQYHRLLSAAGLSVSWSRTMQKRRLSG 212
                 79**************************************8765 PP

>> 7TM_GPCR_Srt  Serpentine type 7TM GPCR chemoreceptor Srt
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.4e-06     0.032      55      92 ..     109     146 ..      72     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.4e-06
  7TM_GPCR_Srt  55 vilkkkliksscykimllLailDilallvnsiitGila 92 
                   ++++  + +s+c+k+ +  ai D+ +l+ ns  tG+l 
    CTQ27918.1 109 ALIQVTQPRSPCFKLNFHFAINDMAQLMQNSGKTGWLY 146
                   677888889***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1779.62
//
Query:       CTQ27919.1  [L=457]
Description: sensory histidine kinase in two-component regulatory system with CpxR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-22   79.2   0.0      4e-21   75.6   0.0    2.5  3  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
      1e-13   51.1   5.0    1.3e-13   50.7   3.7    2.0  2  HisKA        His Kinase A (phospho-acceptor) domain
    6.7e-11   42.7   0.0    1.6e-10   41.5   0.0    1.6  1  CpxA_peri    Two-component sensor protein CpxA, periplasmic d
    1.5e-10   41.3   0.0    4.8e-10   39.7   0.0    1.9  1  HAMP         HAMP domain
      1e-05   25.4   0.0      2e-05   24.4   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
    7.7e-05   22.7   0.0    0.00014   21.8   0.0    1.4  1  HATPase_c_2  Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.36   1.1e+03       7      21 ..     102     118 ..      96     140 .. 0.72
   2 ?   -2.0   0.0       1.7   5.2e+03       7      25 ..     311     329 ..     306     335 .. 0.73
   3 !   75.6   0.0   1.3e-24     4e-21       2     111 ..     346     454 ..     345     455 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.36
                 HHHHHHHHHHHHHH..H CS
   HATPase_c   7 rqiisnlvdNavkf..a 21 
                 +qii+n+++ a+++   
  CTQ27919.1 102 MQIIRNFIGQADNAdhP 118
                 89*********998332 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHHHSTTT CS
   HATPase_c   7 rqiisnlvdNavkfatkag 25 
                  q+ ++++dNa+ +a ++g
  CTQ27919.1 311 NQLWNEVLDNAAFEAEQMG 329
                 5889999999987654444 PP

  == domain 3  score: 75.6 bits;  conditional E-value: 1.3e-24
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETT CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepg 99 
                 ++  L+ ++ n+v Na+++  + ++i+v+ ++++d +++ v D+G+G+++ed++++f +f++ d++++r++ggtGlGl+iv+  +++++G ++ +++p 
  CTQ27919.1 346 NPNALESALENIVRNALRY--SHTKISVSFSVDKDGITVNVDDDGPGVSPEDREQIFRPFYRtDEARDRESGGTGLGLAIVETAIQQHRGWVKADDSPL 442
                 6778999***********9..67888888888899****************************999*****************7777************ PP

                 TEEEEEEEEESS CS
   HATPase_c 100 rGttftftlple 111
                 +G + t++lpl 
  CTQ27919.1 443 GGLRLTIWLPLY 454
                 *********985 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   3.7   4.4e-17   1.3e-13       1      66 [.     238     299 ..     238     300 .. 0.91
   2 ?   -3.6   0.0         4   1.2e+04      40      50 ..     353     363 ..     347     366 .. 0.56

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 4.4e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 s++r+l++++HELrtPL+ +++ + +L+r         + le+ie ea+rld++++dlL +sr +a
  CTQ27919.1 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---R-SGESKELERIETEAHRLDSMINDLLVMSRNQA 299
                 689************************99...3.555666**********************9876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4
                 HHHHHHHHHHH CS
       HisKA  40 yletiesearr 50 
                 +le i+++a r
  CTQ27919.1 353 ALENIVRNALR 363
                 55566655554 PP

>> CpxA_peri  Two-component sensor protein CpxA, periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   5.4e-14   1.6e-10      52     118 ..      82     145 ..      63     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 5.4e-14
                 S-EEEEE-TTS-EE----S-HHHHHHHHHHHHH-S-TTS-EEEEETTEEEEEEEEEEETTEEEEEEE CS
   CpxA_peri  52 rlrlfltdldgeilttkkradfklkalrnfvtsiespekPkqkLYGrymlaGPlpitlakeelllyv 118
                  +rl l + +g+++  +++   +++ +rnf+  +++ ++P++k YGr  + GP+ ++  ++++ ly+
  CTQ27919.1  82 GQRLLLVTSEGRVIGAERN---EMQIIRNFIGQADNADHPQKKRYGRLEMVGPFSVRDGEDNYQLYL 145
                 58999***********888...7899***************************************97 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.6e-13   4.8e-10       1      53 []     181     234 ..     181     234 .. 0.97

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.6e-13
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCT.TSSSHHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpv.sgrDEiGeLarafNaMldrLre 53 
                 +la+++ +P r+L+ aa+++a+G+l+++++   g+ E+ + +++fN+M+++L++
  CTQ27919.1 181 WLAWSLAKPARKLKNAADEVAQGNLRQHPELeAGPQEFLAAGASFNQMVTALER 234
                 89*****************************99******************985 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   6.6e-09     2e-05       4      81 ..     351     423 ..     348     430 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 6.6e-09
  HATPase_c_3   4 ekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlklAs 81 
                  e+Al  +v+N+l  + ++++++++ ++ +  ++ + DdG G+s+e+ ++ +r+   + ea    +  G  G+G  lA+
   CTQ27919.1 351 ESALENIVRNALRYSHTKISVSFSVDK-DGITVNVDDDGPGVSPEDREQIFRPFYRTDEA--RDRESGGTGLG--LAI 423
                  89**********************986.7899********************98888884..45666777887..555 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   4.8e-08   0.00014      39     107 ..     353     426 ..     309     432 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.8e-08
  HATPase_c_2  39 actNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikg 107
                  a+ N+v+ a +  +  +++v++++d++ +tv v D+Gpg  pe++++   + +      + +    G+Gla++++
   CTQ27919.1 353 ALENIVRNALRYSH-TKISVSFSVDKDGITVNVDDDGPGVSPEDREQIFRPFYrtdearDRESGGTGLGLAIVET 426
                  55566666665544.7999********************999987765554447777666666667788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 3696.61
//
Query:       CTQ27920.1  [L=232]
Description: DNA-binding response regulator in two-component regulatory system with CpxA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-29  101.9   0.4    3.6e-29  101.2   0.4    1.4  1  Response_reg  Response regulator receiver domain
    1.2e-21   76.5   0.4    2.7e-21   75.4   0.1    1.8  2  Trans_reg_C   Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
      0.016   15.6   0.1      0.024   15.0   0.1    1.3  1  FleQ          Flagellar regulatory protein FleQ


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.4     6e-33   3.6e-29       1     112 []       4     112 ..       4     112 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 6e-33
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l+vdDd+ + +ll++ll+ eg+ +v +a dg++al+ll+ + vdl+llD++mp+ +G+++lke+r+++ ++pvi+lta+++e d+v +l++gadd+
    CTQ27920.1   4 ILLVDDDRELTSLLKELLDMEGF-NVLVAHDGEQALALLDDS-VDLLLLDVMMPKKNGIDTLKELRQTH-QTPVIMLTARGSELDRVLGLELGADDY 97 
                   89*********************.***************987.************************98.*************************** PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   l Kpf+ +eL+++++
    CTQ27920.1  98 LPKPFNDRELVARIR 112
                   ***********9985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.4   8.4e+03      50      59 ..     108     117 ..     106     126 .. 0.74
   2 !   75.4   0.1   4.5e-25   2.7e-21       1      77 []     152     228 ..     152     228 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.4
                  HHHHHHHHHT CS
  Trans_reg_C  50 isrLRkkLed 59 
                  ++r+R  L+ 
   CTQ27920.1 108 VARIRAILRR 117
                  7889988887 PP

  == domain 2  score: 75.4 bits;  conditional E-value: 4.5e-25
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  g+++elt +ef lL lL+++ g+vvsre+L +ev g++  + dr++d+his+LR+kL ++++ + + +t+rg+GY +
   CTQ27920.1 152 GQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228
                  6889*******************************************************988889**********85 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   4.1e-06     0.024       1      87 [.       3      87 ..       3     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.1e-06
        FleQ  1 kiLvidddaerrrdletiLeFlgeeveavsseelsaaleesssealavilgsvs.sleealealaekdphlPvlllgesdeaeelanv 87
                kiL++ddd e    l+ +L+  g +v +  + e + al ++s ++l++     + +  ++l++l ++ ++ Pv++l+ ++++  l+ v
  CTQ27920.1  3 KILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALALLDDSVDLLLLDVMMPKkNGIDTLKELRQT-HQTPVIMLTARGSE--LDRV 87
                7*********************************999999999999998888885667777777665.5789***9999887..4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1992.40
//
Query:       CTQ27921.1  [L=167]
Description: periplasmic protein combats stress [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-22   78.0  12.9    7.6e-22   78.0  12.9    1.9  2  LTXXQ           LTXXQ motif family protein
    1.2e-08   35.2  16.5    6.9e-07   29.5   7.2    2.3  2  Metal_resist    Heavy-metal resistance
  ------ inclusion threshold ------
      0.063   12.8   0.8       0.12   11.9   0.8    1.6  1  Sua5_yciO_yrdC  Telomere recombination


Domain annotation for each model (and alignments):
>> LTXXQ  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0  12.9   1.3e-25   7.6e-22       4     104 .]      40     136 ..      37     136 .. 0.97
   2 ?    0.4   0.2      0.18   1.1e+03      20      35 ..     137     152 ..     132     165 .. 0.48

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 1.3e-25
                 XXXXSTTTT----HHHHHHHHHHHHHHHHHS---..-HHHHHHHHHHHTSSS--HHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH CS
       LTXXQ   4 griaklkaeLkLtdaQkaalkalaeaaraeakplkakkeemramrkkvlaanfdetaperlarmeamlearleavkkraealkqfyavLtpEQkaklda 102
                 g ++++++++ Lt++Q+++l++l++ ar+++ p   +  em++m+  v+a+nfde+a++++a  e+m+++++++++++a+ ++q+y +LtpEQ+a l+a
  CTQ27921.1  40 GSQSHMFDGISLTEQQRQQLRDLMQRARHDRLPV--NVSEMETMHRLVTAENFDENAVRAQA--EKMAQEQVARQVEMAKVRNQMYHLLTPEQQAVLNA 134
                 7899******************************..**************************..*********************************99 PP

                 HH CS
       LTXXQ 103 ll 104
                 ++
  CTQ27921.1 135 KH 136
                 75 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHS- CS
       LTXXQ  20 kaalkalaeaaraeak 35 
                 ++ +++l+e ar ++ 
  CTQ27921.1 137 QQRMDQLREVARMQKG 152
                 3333334333333333 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   7.2   1.2e-10   6.9e-07      20     109 ..      30     114 ..      12     117 .. 0.85
   2 !   10.8   2.2   7.1e-05      0.42      37      67 ..     118     148 ..     114     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.2e-10
                   XXXXXXXTTHHBH.HHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  20 gpggpppggpargraellraalgLpaeqraelraalrdharelralrrelraarrelaallaaepfDaaaieaalaeiraaqaalraqie 109
                   + +g+ +g+++   + +++    L+++qr++lr +++ ++ ++ +      +  + +++l +ae+fD++a++a+++++++ q+a + +++
    CTQ27921.1  30 WLPGDDGGQRG--SQSHMFDGISLTEQQRQQLRDLMQRARHDRLPVNV---SEMETMHRLVTAENFDENAVRAQAEKMAQEQVARQVEMA 114
                   44444444433..3899999********************99999987...999****************************99888776 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 7.1e-05
                   HHHHS-TTHHHHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  37 lraalgLpaeqraelraalrdharelralrr 67 
                   ++++  L++eq+a l+a +++++ +lr+ +r
    CTQ27921.1 118 NQMYHLLTPEQQAVLNAKHQQRMDQLREVAR 148
                   789999*********************9887 PP

>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   1.9e-05      0.12      27      72 ..      54     100 ..      50     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
                     HHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-.TC--HHHHHHHHC CS
  Sua5_yciO_yrdC  27 eaverlreiKgrpsdkplavlvasledlkklae.seveeealkller 72 
                     +  ++lr++ +r ++  l+v v+++e++++l++ ++++e+a +++++
      CTQ27921.1  54 QQRQQLRDLMQRARHDRLPVNVSEMETMHRLVTaENFDENAVRAQAE 100
                     66799****************************99999998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2432  (0.135646); expected 358.6 (0.02)
Passed bias filter:                      723  (0.0403257); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 1337.13
//
Query:       CTQ27922.1  [L=300]
Description: zinc transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-46  157.4  14.3    4.4e-46  157.1  14.3    1.1  1  Cation_efflux  Cation efflux family
    1.4e-25   89.2   0.1    2.1e-25   88.7   0.1    1.2  1  ZT_dimer       Dimerisation domain of Zinc Transporter
  ------ inclusion threshold ------
      0.032   13.7   1.3      0.042   13.3   0.3    1.7  1  DUF1129        Protein of unknown function (DUF1129)
       0.23   11.3   3.0       0.14   12.0   0.8    1.6  2  DUF4271        Domain of unknown function (DUF4271)


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.1  14.3   9.8e-50   4.4e-46       2     199 .]      14     206 ..      13     206 .. 0.98

  Alignments for each domain:
  == domain 1  score: 157.1 bits;  conditional E-value: 9.8e-50
  Cation_efflux   2 ilsllanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygrlevlgalvsgllllglavfllleaiqklikeg 97 
                    i++++++ +l+l++++++++t+S+++la  + sl+d++++l  ll++++s +p+de+++fG+g++e+l+al +++++ g a+fl+l++iq+l+  +
     CTQ27922.1  14 IAATAMASALLLIKIFAWWYTGSVSILAALVDSLVDIAASLTNLLVVRYSLQPADEEHTFGHGKAESLAALAQSMFISGSALFLFLTGIQHLV-RP 108
                    78999****************************************************************************************.9* PP

  Cation_efflux  98 ereihaglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvaslligliilysalkllke 193
                    e+++ ag+ +vv+l++lv +lal+ + r + rk++s+a++a++lh  +D++++ ++lv++ +++++++     aD++++l ig++ilysal++  e
     CTQ27922.1 109 EPLQAAGVGVVVTLIALVSTLALVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILVALGLSWYGWHR----ADALFALGIGIYILYSALRMGYE 200
                    *****************************************************************9555....9********************** PP

  Cation_efflux 194 slseLl 199
                    ++++Ll
     CTQ27922.1 201 AVQSLL 206
                    ***997 PP

>> ZT_dimer  Dimerisation domain of Zinc Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.1   4.6e-29   2.1e-25       1      78 [.     210     286 ..     210     287 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 4.6e-29
                 ....HHHHHHHHHTT-SS-EEEEEEEEE-S----EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHH-TT--EEEEEEEE CS
    ZT_dimer   1 ldeeeeeeireiiksvpgvkgvhdlrtrksGskifvdlhievdgdlsvkeaHeiadevekrikeefpgvadvliHveP 78 
                 l++ee+++i  i+++ pg++g hdlrtr+sG+++f+++h+e++++l++ +aH iad+ve++i ++fpg +dv+iH +P
  CTQ27922.1 210 LPDEERQDIITIVTAWPGIRGAHDLRTRQSGPTRFIQIHLEMEDNLPLVQAHVIADQVEQAILRRFPG-SDVIIHQDP 286
                 6899****************************************************************.8*******9 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   9.4e-06     0.042      74     150 ..      74     155 ..      55     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.4e-06
     DUF1129  74 k..enpwlmalDnsLlll..alfallfgilalfskkkqtas.iGlitlllvalvgGlamvlvyrlltre.kkkkkrpplwkrl 150
                    +  +l+al +s+++   alf +l+gi  l+ ++  +a+ +G ++++l+alv+ la+v+++r++ r+ +++  r  ++++ 
  CTQ27922.1  74 GhgKAESLAALAQSMFISgsALFLFLTGIQHLVRPEPLQAAgVG-VVVTLIALVSTLALVTFQRWVVRKtQSQAVRADMLHYQ 155
                 2456788999999999963379*************988888455.557789*****************877777787777654 PP

>> DUF4271  Domain of unknown function (DUF4271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.33   1.5e+03      92     123 ..      17      48 ..       9      66 .. 0.58
   2 ?   12.0   0.8   3.2e-05      0.14      51     175 ..      80     202 ..      37     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.33
     DUF4271  92 flilllylllKlllykllgwlFfdkkkirqwi 123
                 ++   ++ll+K+++ + +g++  +   +++ +
  CTQ27922.1  17 TAMASALLLIKIFAWWYTGSVSILAALVDSLV 48 
                 44555556666666665555555555555544 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.2e-05
     DUF4271  51 qlflllltclllglllylllsefgslfgsylassllllliiflilllylllKlllykllgwlFfd.kkkirqwifsylsylsllglllfplvlllvyfp 148
                 +l  l+++ ++ g +l+l+l   + l +    ++l+  ++ ++++l+ l+  l l+ +  w+    ++++      ++++ +++  ++++++ l  y  
  CTQ27922.1  80 SLAALAQSMFISGSALFLFLTGIQHLVRP---EPLQAAGVGVVVTLIALVSTLALVTFQRWVVRKtQSQAVRADMLHYQSDVMMNGAILVALGLSWYGW 175
                 45667788888889999999997777777...9****************************996413333333333444444444499999******** PP

     DUF4271 149 lssqillililiillliklllllyksi 175
                   ++ l+ l++ i++l+ +l++ y  +
  CTQ27922.1 176 HRADALFALGIGIYILYSALRMGYEAV 202
                 *******************99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2213.81
//
Query:       CTQ27923.1  [L=320]
Description: 6-phosphofructokinase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.1e-107  357.7   0.8   4.9e-107  357.5   0.8    1.1  1  PFK         Phosphofructokinase
     0.0019   17.5   0.1     0.0036   16.5   0.0    1.4  2  NAD_kinase  ATP-NAD kinase


Domain annotation for each model (and alignments):
>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.5   0.8  5.5e-111  4.9e-107       1     284 []       4     276 ..       4     276 .. 0.99

  Alignments for each domain:
  == domain 1  score: 357.5 bits;  conditional E-value: 5.5e-111
                 EEEEEEESS--TTHHHHHHHHHHHHHHTT-EEEEETTHHHHHHTT-EEEE-SGGGTT-TT--S-TT-----GGGGSHHHHHHHHHHHHHHT--EEEEEE CS
         PFK   1 riailtsGGdapGmNaairavvrtaikkglevygireGfeGlieeeiekltledvsgilsegGtiLgsaRskefkeregrkkaaenlkklgidaLvviG 99 
                 +i++ltsGGdapGmNaair+vvr+a+++glev+gi++G+ Gl+e+++ +l++ +vs+++++gGt+LgsaR +ef+e++ r+ a+en+kk+g+daLvviG
  CTQ27923.1   4 KIGVLTSGGDAPGMNAAIRGVVRAALTEGLEVFGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFREEHIRAVAIENMKKRGLDALVVIG 102
                 7**************************************************************************9999******************** PP

                 SHHHHHHHHHHHHT..T....--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHHT-EEEEEES-TT-THHHHHHHHHHT-SEEE-TTS CS
         PFK 100 GdgslkganklseerkglleelkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstakshkrvfvvEvmGrncGwlAlmaglaggadvilipEe 198
                 Gdgs+ ga +l+e   g    ++++g+P+TidNDi gtdytiGf TAl+t+veaid+l++t++sh+r+ vvEvmGr+cG l+l+a++agg ++i++pE 
  CTQ27923.1 103 GDGSYMGAMRLTEM--G----FPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISVVEVMGRYCGDLTLAAAIAGGCEFIMVPEV 195
                 ************66..8....****************************************************************************** PP

                 ---HHHHHHHHHHHHT.T-S-EEEEEESSS..S-...HHHHHHHHHHHHSS-EEEEE-GGGGG-S---HHHHHHHHHHHHHHHHHH CS
         PFK 199 pfdieeliekikklrkkgkkksiivvaEgakdkegiiaeelakeieektgievrvtvlGhlqrGgspsafDrilatrlGikavell 284
                 +++ ++l+++ik   +kgkk++i+++ E+++d     ++ela+ ie++tg e+r+tvlGh+qrGgsp ++Drila+r+G+ a+ell
  CTQ27923.1 196 EYTRDDLVAEIKAGIAKGKKHAIVAITEHMCD-----VDELASYIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIELL 276
                 ***************99**************9.....9*******999***********************************985 PP

>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     4e-07    0.0036      69     109 ..      85     124 ..      58     127 .. 0.91
   2 ?   -3.0   0.0      0.37   3.3e+03      16      84 ..     146     219 ..     142     220 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4e-07
                 CCC-TTTTTSSSEEEEEE-HHHHHHHHHHHHHCT-EEEEEE CS
  NAD_kinase  69 kaleafadagvdliivvGGDGTaldvarllqkaeiPvlgvn 109
                  a+e++ ++g d+++v+GGDG    ++rl++    P +g++
  CTQ27923.1  85 VAIENMKKRGLDALVVIGGDGSYMGAMRLTEM-GFPCIGLP 124
                 67899************************995.99999987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.37
                 HHHHHHHHHHCT-.......EEEEECCGGCCSSSTT--HHHHTTTT--.......EEECCC-TTTTTSSSEEEE CS
  NAD_kinase  16 raeevarwLldals.....rvlevtveeklgeslaeaaefrsevisvlkkvkttddtrkaleafadagvdliiv 84 
                 +++e  + L d++s     +v+ev+ +   + +la+a++  +e i v++ ++t+dd  ++++a + +g  ++iv
  CTQ27923.1 146 TVVEAIDRLRDTSSshqriSVVEVMGRYCGDLTLAAAIAGGCEFIMVPEVEYTRDDLVAEIKAGIAKGKKHAIV 219
                 56666666666633466444444444444445556666667777777777888887777777777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2423.18
//
Query:       CTQ27924.1  [L=161]
Description: ribonuclease E (RNase E) inhibitor protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-34  119.7   0.1    1.3e-34  119.5   0.1    1.0  1  RraA-like  Aldolase/RraA


Domain annotation for each model (and alignments):
>> RraA-like  Aldolase/RraA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.1   7.3e-39   1.3e-34       1     149 [.       5     152 ..       5     153 .. 0.93

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 7.3e-39
                 HHHHHHH...........CEE-SSBSTB.TT.EESEEEEEEEEEESS.BGHHHHHHHTS--TTEEEEEESTT.SSSSSECE-HHHHHHHHHTTBSEEEE CS
   RraA-like   1 tadvsDa...........lkklggrsggirplersfvGpavTvkvveadnslvkealeeagpgdvlVvdgggdeslraallGgllataakangvaGvvv 88 
                 t++++D            + ++ggrs+        f G+++Tvk++e dn l++++le+ g+g++l++dggg  s r+al+   la++a +n+++G+vv
  CTQ27924.1   5 TSELCDIyqedvnvveplFSNFGGRSS--------FGGQIITVKCFE-DNGLLYDLLEQNGRGHILLIDGGG--SVRRALIDADLARLAVQNEWEGLVV 92 
                 567888877777888888888888888........99**********.************************..889********************** PP

                 EEEES-HHHHTTSSSEEEEEEE-SSB-B-S.STSEESS-EEETTEEE-TTSEEEEETTEEE CS
   RraA-like  89 dGavRDvaelreldfpvfargvtprkkpkkkgkgevnvpveiggvtvkpgdlivaDedGvv 149
                 +GavR v++l+eld+++ a+++ p++   + g ge +v v++ggvt+ +gd ++aD+ G++
  CTQ27924.1  93 YGAVRQVDDLEELDIGIQALAAIPVGAAGE-GIGESDVRVNFGGVTFFSGDHLYADNTGMI 152
                 *************************96666.****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1338.06
//
Query:       CTQ27925.1  [L=306]
Description: 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-40  138.5  16.6    3.3e-40  138.0  16.6    1.1  1  UbiA      UbiA prenyltransferase family
     0.0051   16.6   0.4     0.0051   16.6   0.4    2.5  2  DUF5362   Family of unknown function (DUF5362)


Domain annotation for each model (and alignments):
>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0  16.6   3.7e-44   3.3e-40       3     234 ..      24     267 ..      22     282 .. 0.81

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 3.7e-44
        UbiA   3 ipalvg.lalaaggspdlllllllllgtllaaaaanalNdyfDreiDadme.rt.pnRPlvsGrispkealifaivllilgllll.......allln.. 89 
                  +++vg ++++++g++d++++ll+l+++ l+++ +n+ Ndy D+ +++d + r  p R   +G i+p++++++ iv+++l +l++       +  ++  
  CTQ27925.1  24 AAIIVGtVLAWEQGHFDPWVALLALITAGLLQILSNLANDYGDAVKGSDKPdRIgPLRGMQKGVITPQQMKRALIVTVVLICLFGlallcaaWQSVGdf 122
                 56788899999**************************************9964479999*************999999999888888777764444433 PP

        UbiA  90 pltallgllalllyvvYt.g.lrlKrrtllgtvvggiafglppllgwaa.vtgslsllalllalavflltwaialandlrdregDrkagiktlpvvlGr 185
                   +++lg l++++++ Yt g  ++++++l g++ + ++fg++ +lg  + +++++ ++++l+a a++ll++a++ +n+lrd+++Dr+ g++tl+v+lG+
  CTQ27925.1 123 IGFLALGGLSIVAAITYTvGtRPYGYIGL-GDISVLVFFGWLSVLGSWYlQAHNVEAAIFLPATACGLLATAVLNINNLRDIDSDRQNGKNTLAVRLGP 220
                 455668889**********99********.**********988887666599999******************************************** PP

        UbiA 186 kaarillalllavlllallllllalllllylllalllaalallraarlv 234
                  +ar+++a+ll+++ll+  l+l+ ll+l  ++ +l+++a +ll+   ++
  CTQ27925.1 221 VNARRYHACLLLGALLC--LALFNLLALHSAWGWLFILATPLLVKQARY 267
                 ******88888888888..233333333333333333333333322222 PP

>> DUF5362  Family of unknown function (DUF5362)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.29   2.6e+03      76      86 ..      97     107 ..      85     115 .. 0.58
   2 !   16.6   0.4   5.7e-07    0.0051      16      86 ..     230     302 ..     228     306 .] 0.85

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.29
     DUF5362  76 lilliielvls 86 
                 li++++ + l 
  CTQ27925.1  97 LIVTVVLICLF 107
                 44444444433 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 5.7e-07
     DUF5362  16 iilGaltcLsIigii.....igvllIivglklfkaakaikealrskseeklkealeklakylkillilliielvls 86 
                 ++lGal cL+++  +     +g+l I++  +l+k+a      lr++++ +++ +lek  k   ++  l++i ++ s
  CTQ27925.1 230 LLLGALLCLALFNLLalhsaWGWLFILATPLLVKQARY---VLRESDPLAMRPMLEKTVKGALLTNLLFVIGIIAS 302
                 689******998764333338************99876...58999***************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2171.87
//
Query:       CTQ27926.1  [L=444]
Description: molecular chaperone and ATPase component of HslUV protease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-51  172.5   0.4    9.9e-42  142.9   0.1    2.4  2  AAA_2            AAA domain (Cdc48 subfamily)
    2.3e-16   60.4   0.0    2.7e-07   31.1   0.0    2.6  2  AAA              ATPase family associated with various cellul
    1.6e-07   31.4   0.1    1.3e-05   25.2   0.0    2.6  2  AAA_5            AAA domain (dynein-related subfamily)
    3.9e-07   30.4   0.0    0.00014   22.2   0.0    2.5  2  AAA_22           AAA domain
    1.1e-06   28.6   0.7    4.8e-06   26.5   0.1    2.3  2  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    4.3e-05   22.7   0.3     0.0018   17.4   0.0    2.2  2  MCM              MCM P-loop domain
    0.00023   21.6   0.7    0.00098   19.5   0.2    2.3  2  AAA_16           AAA ATPase domain
    0.00026   20.4   0.1     0.0036   16.7   0.0    2.7  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.001   18.8   0.1       0.02   14.6   0.0    2.7  3  Sigma54_activat  Sigma-54 interaction domain
     0.0018   18.1   0.8      0.087   12.6   0.0    2.9  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0018   18.8   0.1      0.006   17.1   0.0    2.0  1  AAA_18           AAA domain
     0.0084   15.5   0.2      0.025   14.0   0.0    1.9  2  TniB             Bacterial TniB protein
     0.0087   15.8   0.0      0.024   14.4   0.0    1.8  1  IstB_IS21        IstB-like ATP binding protein
     0.0093   16.2   0.6      0.043   14.1   0.0    2.5  2  AAA_28           AAA domain
  ------ inclusion threshold ------
      0.014   14.7   0.6       0.08   12.1   0.0    2.1  2  TIP49            TIP49 P-loop domain
      0.015   15.5   0.0      0.032   14.4   0.0    1.6  1  AAA_33           AAA domain
      0.015   15.3   0.0          4    7.5   0.0    2.4  2  AAA_14           AAA domain
      0.037   13.8   0.2       0.14   11.9   0.1    2.1  2  AAA_24           AAA domain
      0.039   14.0   0.0       0.14   12.1   0.0    1.9  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.045   13.3   0.0       0.13   11.8   0.0    1.7  1  AAA_7            P-loop containing dynein motor region
      0.048   13.5   0.0       0.11   12.4   0.0    1.6  1  RsgA_GTPase      RsgA GTPase
      0.063   13.8   0.0       0.25   11.8   0.0    2.0  2  ABC_tran         ABC transporter
      0.073   12.7   0.0       0.16   11.6   0.0    1.5  1  SRP54            SRP54-type protein, GTPase domain
      0.083   12.7   0.0        1.3    8.8   0.0    2.3  2  DEAD             DEAD/DEAH box helicase
      0.084   12.1   0.0       0.18   11.1   0.0    1.5  1  Zeta_toxin       Zeta toxin
       0.11   12.2   0.1       0.45   10.1   0.0    1.9  2  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
       0.12   12.7   0.0        1.1    9.7   0.0    2.2  2  RNA_helicase     RNA helicase
       0.74    9.8   3.6        1.7    8.6   0.0    2.9  4  ResIII           Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   4.5e-09   2.9e-06       5      64 ..      52     111 ..      49     115 .. 0.91
   2 !  142.9   0.1   1.6e-44   9.9e-42      10     171 .]     188     330 ..     170     330 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 4.5e-09
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT-H CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgyv 64 
                 +il++gptgvGkte+a+ la+l ++    ++i ++a++++e    ++ev++++  l+ a+  +v
  CTQ27926.1  52 NILMIGPTGVGKTEIARRLAKLANA----PFIKVEATKFTEvgyvGKEVDSIIRDLTDAAIKMV 111
                 89**********************6....************99999999999999998876666 PP

  == domain 2  score: 142.9 bits;  conditional E-value: 1.6e-44
                 --TTSSHHHHHHHHHHHTT-............-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG----..---------HHHHHH CS
       AAA_2  10 gptgvGktelakalaellfv........kkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpk..essgadvSregVqrd 98 
                  p   G   +++++++l+++        +k +kl ++da +ll eee+++lv+ ++ +++++ ++e++Giv++DEidKi+++  ++sg+dvSregVqrd
  CTQ27926.1 188 SPP--G---MEEMTSQLQSMfqnlggqkQKPRKLKIKDAMKLLIEEEAAKLVNPEELKQEAIDAVEQHGIVFIDEIDKICKRggNTSGPDVSREGVQRD 281
                 333..3...555555555555559*999999****************************************************99************** PP

                 HHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2  99 LLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpei 171
                 LL+++eg+t+++k+g +v+t++ilfI++gaf+++ +sd                       lipEl+gRlp++
  CTQ27926.1 282 LLPLVEGCTVSTKHG-MVKTDHILFIASGAFQVASPSD-----------------------LIPELQGRLPIR 330
                 ***************.**********************.......................**********86 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   4.2e-10   2.7e-07       1      90 [.      53     136 ..      53     144 .. 0.77
   2 !   26.8   0.0   8.8e-09   5.6e-06      39     130 ..     226     333 ..     186     335 .. 0.73

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 4.2e-10
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLl 90 
                 +l++Gp G+GKT +a+ +ak ++++f+++++++++   vg   k++  +++++   a  + + +  id+    r ++e+  eerv+++L+
  CTQ27926.1  53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT--EVGYVGKEVDSIIRDLTDAA-IKMVRMQSIDKN---RYRAEELAEERVLDVLI 136
                 699********************************..56777777777777766666.666666666665...33346667777776665 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 8.8e-09
                 TTHHHHHHHHHHHHHHHTS.....TSEEEEEETGGGHHHHH..TTCCCHHHHHHHHHHHHHHHHTTTS.......SSTEEEEEEESS....GGGSTHHH CS
         AAA  39 vgesekkirelfkeakeka.....kpsilfiDEidalaksr..sgseseeeervvnqLlteldgvkkk.......eskvivigatnr....pdkldpal 119
                 ++e ++k+ +  +e+k++a     ++ i+fiDEid+++k+   +++ + ++e v+  Ll+ ++g + +       ++++++i+ +      p++l p+l
  CTQ27926.1 226 IEEEAAKLVNP-EELKQEAidaveQHGIVFIDEIDKICKRGgnTSGPDVSREGVQRDLLPLVEGCTVStkhgmvkTDHILFIASGAFqvasPSDLIPEL 323
                 44444444433.334555556675679*************98655677788899************999999999666999988876666688888888 PP

                 HSTTSSEEEET CS
         AAA 120 lrgRfdrkiei 130
                   gR+ +++e+
  CTQ27926.1 324 Q-GRLPIRVEL 333
                 8.998888765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0     2e-08   1.3e-05       1      38 [.      52      89 ..      52     164 .. 0.84
   2 ?    3.4   0.1      0.11        70      57      77 ..     241     261 ..     224     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2e-08
                EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--H CS
       AAA_5  1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtte 38
                ++l++Gp+G+gK+e+a+rla++ n+++  v  t++t+ 
  CTQ27926.1 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV 89
                689*****************************999986 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.11
                 --------G-SEEEEESGGG- CS
       AAA_5  57 splvraaregeilvlDEvera 77 
                 +++ +a+++  i+++DE++++
  CTQ27926.1 241 QEAIDAVEQHGIVFIDEIDKI 261
                 5677788899*********97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.2e-07   0.00014       5      70 ..      50     106 ..      45     137 .. 0.74
   2 ?    5.7   0.0     0.026        17      37     103 ..     175     261 ..     153     284 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.2e-07
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka 70 
                  + ++ +G++G+GKT  +rrl++ +         ++++++v++++ t+   + +e+ +++ + ++a
  CTQ27926.1  50 PKNILMIGPTGVGKTEIARRLAKLA---------NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDA 106
                 567899******************9.........***********997777766666666655544 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.026
      AAA_22  37 e....erpevvfvtlpsstsskdllrellralglelka...................erlsseellealeqalraravielliiDEaqhl 103
                      ++ +v  + +p+ ++ ++ l+ ++++lg ++ +                   +  + eel +   +a+++++    + iDE++++
  CTQ27926.1 175 IdlaaAPMGVEIMSPPGMEEMTSQLQSMFQNLGGQKQKprklkikdamkllieeeaaKLVNPEELKQEAIDAVEQHGI---VFIDEIDKI 261
                 155655556667777777888888999999999988889888888888888887666777777777777777777755...99****987 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1         4   2.5e+03      13      42 ..     198     230 ..     195     234 .. 0.61
   2 !   26.5   0.1   7.5e-09   4.8e-06       1      62 [.     336     406 ..     336     414 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4
                    HHHHHHHHS...CTTTEEEEEHHHHHHHHHHHT CS
  ClpB_D2-small  13 alkklekrl...kergvelevtdealdalaekg 42 
                    +l+ + + l   k++  +l+++d+++  + e++
     CTQ27926.1 198 QLQSMFQNLggqKQKPRKLKIKDAMKLLIEEEA 230
                    677777777652234477888777776665554 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 7.5e-09
                    SCHHHHHHHHHH...HHHHHHHHSCT.TTEEEEEHHHHHHHHHHHT.....SBTTTBTCCHHHHHHHHTHH CS
  ClpB_D2-small   1 LtkeelkkIvdl...alkklekrlke.rgvelevtdealdalaekg.....ydpeyGARpLrriiqreied 62 
                    Lt  + ++I+++    +  ++k l++ +gv++e+t++ ++ +a+++     + ++ GAR L ++++r +ed
     CTQ27926.1 336 LTTHDFERILTEpnaSITVQYKALMAtEGVNIEFTEDGIKRIAQAAwqvneTTENIGARRLHTVLERLVED 406
                    7888999*****9999999*****88799****************9888888999**************98 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.8e-06    0.0018      16      84 ..       7      77 ..       2     102 .. 0.79
   2 ?    2.9   0.1     0.075        48     121     135 ..     249     263 ..     243     267 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.8e-06
                HHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-...EEEEEESSTSTHHHHHHHHHHHSSSE CS
         MCM 16 eklvksiapsiyghedvkkaillqlfggvkkkledktklrgdi...nvllvgdpgtaKsqlLkyveklapra 84
                +++v+ + ++i+g+++ k++++++l    ++ + +  +lr ++   n+l++g  g++K+++ ++++kla+  
  CTQ27926.1  7 REIVSELDKHIIGQDAAKRSVAIALRNRWRRMQLN-EELRHEVtpkNILMIGPTGVGKTEIARRLAKLANAP 77
                57899999*****************9999975544.67777655559*****************99887643 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.075
                 TTSEEEEESGGGSTC CS
         MCM 121 dkGvcciDefdkmke 135
                 ++G++ iDe+dk+ +
  CTQ27926.1 249 QHGIVFIDEIDKICK 263
                 68**********865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.2   1.5e-06   0.00098      21     107 ..      47     147 ..      32     264 .. 0.65
   2 ?   -1.2   0.0       3.7   2.4e+03      80     128 ..     339     405 ..     299     412 .. 0.54

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.5e-06
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy.....salaqalareellrqlldeaesaeleawrekleeala........ 106
                 + +p ++l +G+ GvGK+ ++r+l++ +++    f++ +++++ +++ y     + +++ l ++  ++ +  ++ +   +++r++ +++ +        
  CTQ27926.1  47 EVTPKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKF-TEVGYvgkevDSIIRDL-TDAAIKMVRMQSID--KNRYRAEELAEERvldvlipp 138
                 446799*******************999988...766666666.22222222213344444.22333333333222..222222222222234555566 PP

      AAA_16 107 ........a 107
                         +
  CTQ27926.1 139 aknnwgqtE 147
                 666655431 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.7
      AAA_16  80 ellrqlldeaesaeleawrekleeala...................avpelagaea.srllellkrlla 128
                 + ++ +l+e++++   ++++   +  +                   +v+e +  +  +rl+ +l rl++
  CTQ27926.1 339 HDFERILTEPNASITVQYKALMAT--EgvnieftedgikriaqaawQVNETTENIGaRRLHTVLERLVE 405
                 555555555333333333332222..1234444444444443333333333333334777777777774 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         2   1.3e+03       4      19 ..      16      31 ..      15      36 .. 0.88
   2 !   16.7   0.0   5.6e-06    0.0036      23      56 ..      51      85 ..      46     108 .. 0.79
   3 ?   -1.0   0.0       1.4   9.2e+02     106     118 ..     249     261 ..     233     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2
  Mg_chelatase  4 dvkGqeeakraleiaa 19
                  +++Gq++akr + ia 
    CTQ27926.1 16 HIIGQDAAKRSVAIAL 31
                  799*********9996 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 5.6e-06
  Mg_chelatase 23 HnlllvGppGsGKtmlakrlpsll.pplseeeale 56
                   n+l++Gp G GKt +a+rl++l  +p  + ea +
    CTQ27926.1 51 KNILMIGPTGVGKTEIARRLAKLAnAPFIKVEATK 85
                  59******************998623444555555 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.4
  Mg_chelatase 106 hnGvLfLDElpef 118
                   ++G++f+DE+ ++
    CTQ27926.1 249 QHGIVFIDEIDKI 261
                   79*******9876 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.1e-05      0.02      20      61 ..      48      86 ..      32      89 .. 0.79
   2 ?   -1.9   0.0       3.7   2.3e+03     117     148 ..     199     229 ..     184     242 .. 0.71
   3 ?    0.3   0.0      0.78     5e+02      93     105 ..     249     261 ..     235     266 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.1e-05
                     TSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS CS
  Sigma54_activat 20 ktdlsvlitGesGtGKellaraiheaskrkekpfvavncaai 61
                      t+ ++l+ G +G+GK+ +ar + +    +++pf++v+ +++
       CTQ27926.1 48 VTPKNILMIGPTGVGKTEIARRLAKL---ANAPFIKVEATKF 86
                     46789****************98765...5589999987765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.7
                      HHHSEEESBTSSSEEE--EEEEEEESS-HHHH CS
  Sigma54_activat 117 lqegevervGsskeikvdvriiaatnedleea 148
                      lq   ++ +G++k+++ +++i  a +  +ee+
       CTQ27926.1 199 LQ-SMFQNLGGQKQKPRKLKIKDAMKLLIEEE 229
                      44.46899999999998888877776665555 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.78
                      TTSEEEEETGGGS CS
  Sigma54_activat  93 dgGtlfLDeigel 105
                      ++G++f+Dei ++
       CTQ27926.1 249 QHGIVFIDEIDKI 261
                      68********987 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00014     0.087       9      60 ..      17      77 ..      10     136 .. 0.74
   2 ?    3.1   0.0      0.11        73      79      98 ..     244     263 ..     218     269 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00014
      RuvB_N  9 yigqekvkeklkifieaakkr...eealdh......vllyGpPGlGkttlakiiakelgvk 60
                 igq++ k +++i+++   +r   +e+l h      +l++Gp G+Gkt +a+ +ak  ++ 
  CTQ27926.1 17 IIGQDAAKRSVAIALRNRWRRmqlNEELRHevtpknILMIGPTGVGKTEIARRLAKLANAP 77
                5788888888888888765552223444444444449**************9999876655 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
      RuvB_N  79 ltnleekdvlfideihrlsr 98 
                 +  +e++ ++fidei ++ +
  CTQ27926.1 244 IDAVEQHGIVFIDEIDKICK 263
                 5678999********99865 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   9.3e-06     0.006       1      25 [.      53      86 ..      53     137 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 9.3e-06
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf.........g 25
                Il  G+ GvGKt++a++L+k+ +           
  CTQ27926.1 53 ILMIGPTGVGKTEIARRLAKLANApfikveatkF 86
                7889****************96446665554442 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.9e-05     0.025      32      97 ..      47     114 ..      27     135 .. 0.68
   2 ?   -2.6   0.0       4.7     3e+03     108     132 ..     240     262 ..     223     266 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.9e-05
        TniB  32 rkrmpnlllvGdsnnGKtmivekFarlhppek.d.edaekvpvlvvqappkpdekrlyaaiLealgap 97 
                 +  ++n+l++G++ +GKt i+++ a+l ++   + e ++  +v +v     +  ++l +a ++ ++++
  CTQ27926.1  47 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFiKvEATKFTEVGYVGKEVDSIIRDLTDAAIKMVRMQ 114
                 45568********************9886553131334444776766666666666666666555555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.7
        TniB 108 eqqvlrllrelkvrvLiiDEihnll 132
                 +q+++   ++    ++ iDEi+++ 
  CTQ27926.1 240 KQEAIDAVEQ--HGIVFIDEIDKIC 262
                 4444444443..3578899999875 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.8e-05     0.024      47      74 ..      50      77 ..      32     121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.8e-05
   IstB_IS21 47 kenivllGpsGvGKshlaialgveavra 74
                 +ni+++Gp+GvGK+ +a  l++ a + 
  CTQ27926.1 50 PKNILMIGPTGVGKTEIARRLAKLANAP 77
                58****************9999877655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   6.7e-05     0.043       2      66 ..      53     117 ..      52     135 .. 0.81
   2 ?   -2.0   0.0       5.7   3.7e+03     134     156 ..     393     415 ..     369     421 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.7e-05
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvvpEaareileeklakgedalpwv.edllafaervleeqlee 66 
                 i ++G+ + GKT ++++La+  + p ++  a++++e ++  +e +  +  +dl + a++++++q  +
  CTQ27926.1  53 ILMIGPTGVGKTEIARRLAKLaNAPFIKVEATKFTEVGYVGKEVD--SIiRDLTDAAIKMVRMQSID 117
                 899****************97799999988999999999777754..44479999999888887644 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.7
      AAA_28 134 reaiderlrealrelgipviivp 156
                 +++++++l+ +++++ ++  +++
  CTQ27926.1 393 ARRLHTVLERLVEDISYDASEMN 415
                 67888888888888888887774 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012      0.08      20      88 ..      11      86 ..       4     122 .. 0.75
   2 ?    0.3   0.2      0.49   3.2e+02     234     287 ..     197     258 ..     191     261 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
                XXXXXXXXXXXXXXXXXXXXXX.......XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 20 ekeeeglvGqkkareaagvive.......like..kklaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsev 88
                ++ ++ ++Gq +a++++++ ++       l +e  ++++ + +L+ Gp+g Gkt +a  ++k    + pf+++ ++++
  CTQ27926.1 11 SELDKHIIGQDAAKRSVAIALRnrwrrmqLNEElrHEVTPKNILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKF 86
                5566778888888888887653222221122222256789*****************9999864..589999998876 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.49
                 XXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXX.....XXXXXXXXX CS
       TIP49 234 arpqdllsll.lqllkskkteiteklreeinkkvakyve..egkaeiv.....pGvlfiDev 287
                 ++ q+++  l  q++k++k  i++ ++  i++  ak v+  e k e +      G++fiDe+
  CTQ27926.1 197 SQLQSMFQNLgGQKQKPRKLKIKDAMKLLIEEEAAKLVNpeELKQEAIdaveqHGIVFIDEI 258
                 55566665552477899999999999988888888887522333444422233599999997 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     5e-05     0.032       2      31 ..      53      82 ..      53     135 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5e-05
      AAA_33  2 vllvGlpGsGKstlaerllkklgavllssd 31
                +l++G+ G+GK+  a+rl+k   a ++   
  CTQ27926.1 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVE 82
                69****************965555555554 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.023        15       3      35 ..      51      80 ..      49     122 .. 0.72
   2 ?    7.5   0.0    0.0063         4      42     116 ..     229     326 ..     196     341 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.023
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesily 35
                k +++ G+  vGKT ++++l+k        ++ 
  CTQ27926.1 51 KNILMIGPTGVGKTEIARRLAKLAN---APFIK 80
                568899**************95444...33333 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0063
      AAA_14  42 rdkkladpekllelileklke.ekktylflDEiqev.........................pewekalkslvdegknldvivtGSnskllskeiatsla 114
                 + +kl +pe+l ++  +   + e++ ++f+DEi ++                         ++     k+ + +++++ +i++G  +    +++  +l+
  CTQ27926.1 229 EAAKLVNPEELKQEAID---AvEQHGIVFIDEIDKIckrggntsgpdvsregvqrdllplvEGCTVSTKHGMVKTDHILFIASGAFQVASPSDLIPELQ 324
                 22233344444444444...246899*******998676666666666666666555555544444444444444455555555555555555555555 PP

      AAA_14 115 gr 116
                 gr
  CTQ27926.1 325 GR 326
                 55 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00022      0.14       2      33 ..      50      83 ..      49     129 .. 0.81
   2 ?   -2.9   0.0       7.4   4.8e+03      16      31 ..     408     423 ..     370     434 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00022
      AAA_24  2 klkiliyGpsgiGKTtlakel..gpkplfidtek 33
                +++il++Gp g+GKT +a++l    ++ fi +e+
  CTQ27926.1 50 PKNILMIGPTGVGKTEIARRLakLANAPFIKVEA 83
                689*****************98877777777666 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.4
      AAA_24  16 Ttlakelgpkplfidt 31 
                 ++ a+e+  +++ id 
  CTQ27926.1 408 SYDASEMNGQTVTIDA 423
                 3344444445555555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00022      0.14       9      52 ..      39      85 ..      31      95 .. 0.78
   2 ?   -2.6   0.0       7.9   5.1e+03      75     115 ..     346     385 ..     329     395 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00022
                HHHHHHHHCH.TEEEEEEESTTSSHHHHHHHHHHHTT--..----TT CS
        TsaE  9 algkklakal.gdvilLeGdLGaGKTtlvrglakalgve..evkSPT 52
                +l ++l +++  + il+ G+ G+GKT ++r lak  +    +v+   
  CTQ27926.1 39 QLNEELRHEVtPKNILMIGPTGVGKTEIARRLAKLANAPfiKVEATK 85
                56666766555677*******************98877656666555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.9
                 SSTHHHHHCTTCCCCSTSCEEEEETGGGGCCCS-S-CEEEE CS
        TsaE  75 edeeeleelgleeyleeeavvlvEWpekleellpeedleie 115
                 ++++   +++++ ++++ + v +E+ e   + +++++++++
  CTQ27926.1 346 TEPNASITVQYKALMAT-EGVNIEFTEDGIKRIAQAAWQVN 385
                 44555556666666643.35778888875454555555554 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0002      0.13      34      58 ..      51      75 ..      39      93 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
       AAA_7 34 kpvllvGptGtGKtviikdllkkld 58
                k++l++GptG+GKt i+++l k  +
  CTQ27926.1 51 KNILMIGPTGVGKTEIARRLAKLAN 75
                79**************999776554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00017      0.11      88     121 ..      39      72 ..       8      88 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00017
                  TTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  88 egleelkellkdktsvlvGqSGvGKStLinallp 121
                  +  eel+++++ k ++++G++GvGK+ +  +l+ 
   CTQ27926.1  39 QLNEELRHEVTPKNILMIGPTGVGKTEIARRLAK 72 
                  4457999999****************99999876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0004      0.25      13      93 ..      52     164 ..      46     225 .. 0.68
   2 ?   -1.9   0.0       6.8   4.3e+03      54      92 ..     367     403 ..     343     438 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0004
                 EEEEEESTTSSHHHHHHHHTTSS--........SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkp........teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........................ 79 
                  + ++G++G GK+ +++ la+l +         +  e+ + gk+++++ +  +++ i+++  ++  +++++++e                         
  CTQ27926.1  52 NILMIGPTGVGKTEIARRLAKLANApfikveatKFTEVGYVGKEVDSIIRDLTDAAIKMVRMQSIDKNRYRAEELaeervldvlippaknnwgqtepsq 150
                 57799*****************99866666555223334447777778888888888888888777777766666777788888888777777775555 PP

                 ....HHHTCHHHHHHHST CS
                 ....xxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklg 93 
                     +     +++++kl+
  CTQ27926.1 151 epsaA----RQAFRKKLR 164
                 33330....333333333 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 6.8
                 HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  54 leslrkeigvlpqepqlfpeltvrenesdeeiekalskl 92 
                 +e+++  i+ + q +   +e+   en   ++++++l++l
  CTQ27926.1 367 IEFTEDGIKRIAQAAWQVNET--TENIGARRLHTVLERL 403
                 555555556666654444444..2443333333333333 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00025      0.16       2      26 ..      51      75 ..      50      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
                EEEEEEESTTSSHHHHHHHHHHHHH CS
       SRP54  2 nvillvGlqGaGKTttlaKLaallk 26
                + il++G++G+GKT  + +La+l +
  CTQ27926.1 51 KNILMIGPTGVGKTEIARRLAKLAN 75
                679************9999998765 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0     0.002       1.3      14      31 ..      50      67 ..      38      80 .. 0.86
   2 ?    1.1   0.0      0.46     3e+02      82     136 ..     206     264 ..     191     275 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.002
                TCEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
        DEAD 14 ggdvlvaaeTGsGKTlaf 31
                 +++l+ ++TG GKT+++
  CTQ27926.1 50 PKNILMIGPTGVGKTEIA 67
                589************986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.46
                 ETTSSHHHHHHHHHTTCSEEEEEHHHHHHHH.....HCTSSH.CTTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxx.xxxxxxxxxxxxxxxxxx RF
        DEAD  82 iggvaardqlskldngvdivvgtpgrlddll.....stgkln.lsqvrflVlDEadrlldq 136
                 +gg++++  + k++  +++++      ++l+     +++ ++ ++q  ++ +DE+d++ + 
  CTQ27926.1 206 LGGQKQKPRKLKIKDAMKLLIEEE--AAKLVnpeelKQEAIDaVEQHGIVFIDEIDKICKR 264
                 566666666666655566666544..4444523333444444789999999*****98766 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00028      0.18      13      54 ..      47      86 ..      37     109 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
  Zeta_toxin 13 qerPklillgGqpGAGKselaellkdelerqgnvvrldpDdl 54
                + +Pk il+ G +G GK+e+a+ l++    +  +++++++++
  CTQ27926.1 47 EVTPKNILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKF 86
                468*******************999876..777777776665 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0007      0.45      16      67 ..      52     107 ..      47     127 .. 0.84
   2 ?   -1.2   0.0         2   1.3e+03     102     135 ..     362     395 ..     340     442 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0007
                  EEEEEESTTSSHHHHHHHHHHHSSTS....SEEEEEEESEEHHHHHHHHHHCHHSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  16 rtlipgafgvGktvisqslskqsnsd....daiiyvgiGergnevaevleefpegt 67 
                  ++l++g  gvGkt+i++ l+k +n+     +a+ +  +G  g+ev +++++++++ 
   CTQ27926.1  52 NILMIGPTGVGKTEIARRLAKLANAPfikvEATKFTEVGYVGKEVDSIIRDLTDAA 107
                  6789******************9887776568889999999999999999988755 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2
                  HTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGG CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 102 dqgknvlliadslsrwaeAlreislrlgempadq 135
                   +g n+ +  d + r a+A  ++   ++++ a++
   CTQ27926.1 362 TEGVNIEFTEDGIKRIAQAAWQVNETTENIGARR 395
                  4677777777888888888888777777666654 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0017       1.1       1      23 [.      53      75 ..      53     111 .. 0.81
   2 ?    0.1   0.0       1.6     1e+03      28      62 ..     228     262 ..     214     271 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0017
  RNA_helicase  1 iwlyGpsgeGKStlakeLakall 23
                  i++ Gp+g+GK+ +a++Lak   
    CTQ27926.1 53 ILMIGPTGVGKTEIARRLAKLAN 75
                  6789*************987655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.6
  RNA_helicase  28 lkkkdsvysrnpeddfwdgYtgqevvvidDfgqvk 62 
                   ++ ++ v   + +++  d  +++ +v id++ ++ 
    CTQ27926.1 228 EEAAKLVNPEELKQEAIDAVEQHGIVFIDEIDKIC 262
                   4444445557789999999**********998765 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0026       1.7      22      46 ..      48      72 ..      19      78 .. 0.77
   2 ?   -1.7   0.0         4   2.6e+03      98     126 ..     100     125 ..      77     136 .. 0.63
   3 ?   -0.1   0.1       1.3   8.2e+02      93     140 ..     210     257 ..     191     264 .. 0.45
   4 ?   -2.2   0.0       5.7   3.7e+03     121     140 ..     412     437 ..     332     437 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0026
                .TTSEEEEEESTTSTHHHHHHHHHH CS
      ResIII 22 krdkrglikmaTGtGKTlvaaklie 46
                   k++l+  +TG+GKT +a +l++
  CTQ27926.1 48 VTPKNILMIGPTGVGKTEIARRLAK 72
                5678999************988876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4
                 ......-SEEEEEHHHHHHTH........ CS
      ResIII  98 ekdstnkkilvttiqsldadseeeeeese 126
                  +d t++ i ++  qs+d+++ ++   +e
  CTQ27926.1 100 IRDLTDAAIKMVRMQSIDKNRYRA---EE 125
                 357789999999999999999333...32 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.3
                 -B--........-SEEEEEHH.HHHHTH........HHHTTT-SEEEEET CS
      ResIII  93 kkka.kekdstnkkilvttiq.sldadseeeeeeseellrdrfdviiiDE 140
                 k+k+ k k ++ +k+l++++  +l +++  e +++     +++ +++iDE
  CTQ27926.1 210 KQKPrKLKIKDAMKLLIEEEAaKLVNPE--ELKQEAIDAVEQHGIVFIDE 257
                 3333122224444444433321232322..23333334445555777777 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 5.7
                 ............HHHTTT-SEEEEET CS
      ResIII 121 e......eeeseellrdrfdviiiDE 140
                           + e+ +++ dv++ DE
  CTQ27926.1 412 SemngqtVTIDAEYVSKHLDVLVADE 437
                 03333445566677777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 3241.14
//
Query:       CTQ27927.1  [L=176]
Description: peptidase component of the HslUV protease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-23   82.2   0.3    5.7e-23   81.4   0.3    1.4  1  Proteasome  Proteasome subunit
  ------ inclusion threshold ------
      0.035   14.1   1.8      0.064   13.2   0.8    2.1  2  ALF         Short repeats of unknown function
       0.12   12.3   0.0       0.19   11.5   0.0    1.4  1  PspC        PspC domain


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.3   9.5e-27   5.7e-23       5     185 ..       2     167 ..       1     172 [. 0.93

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 9.5e-27
                 -EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEE.ETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTTT CS
  Proteasome   5 ttvvGikgkdgvvlaadkratagskllskstveKifki.ddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgrr 102
                 tt+v ++ +++vv+a+d +at g+++ +k +v+K++++ +d+++++faG +aDa tl++ +++++++++       ++         k+++++++++r 
  CTQ27927.1   2 TTIVSVRRNGHVVIAGDGQATLGNTV-MKGNVKKVRRLyNDKVIAGFAGGTADAFTLFELFERKLEMHQ------GHLV--------KAAVELAKDWRT 85 
                 8*************************.6666**************************************......5555........788999999999 PP

                 TTSEEEEEEEEETTTEEEEEEEETTSEEEEES.SEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSE CS
  Proteasome 103 pfgvslliagvdeeggpeLyqidpsGsyieek.davaiGsgseaaktalekeykedltleeavelavkalkealerdklsgkni 185
                 + +++ l a +   +++  + i+ +G++++++ d +aiGsg  +a++a ++++  + t+  a ++a+kal  a + + +++   
  CTQ27927.1  86 DRMLRKLEALLAVADENASLIITGNGDVVQPEnDLIAIGSGGPYAQAAARALL--ENTDMGARDIAEKALDIAGDICIYTNHFH 167
                 999999999999888888899***********9********************..99********************9998755 PP

>> ALF  Short repeats of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   1.1e-05     0.064       9      28 ..     122     142 ..     118     147 .. 0.82
   2 ?   -2.1   0.0      0.65   3.9e+03      19      24 ..     149     154 ..     144     158 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
         ALF   9 a..tgGpaVraAAqaALdaGtp 28 
                 a  +gGp+ +aAA+a L+ +t+
  CTQ27927.1 122 AigSGGPYAQAAARALLE-NTD 142
                 4449*************8.998 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.65
         ALF  19 AqaALd 24 
                 A++ALd
  CTQ27927.1 149 AEKALD 154
                 999997 PP

>> PspC  PspC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.3e-05      0.19       1      24 [.      33      56 ..      33      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.3e-05
        PspC  1 krLyRspdnkvlgGVcaGlAeyfg 24
                k+  R  ++kv++G ++G A+ f 
  CTQ27927.1 33 KKVRRLYNDKVIAGFAGGTADAFT 56
                7899999*************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1411.86
//
Query:       CTQ27928.1  [L=284]
Description: essential cell division protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-16   59.2   1.9    7.9e-16   58.2   0.0    2.5  3  SPOR           Sporulation related domain
  ------ inclusion threshold ------
      0.032   14.2  33.6      0.037   14.0  33.6    1.1  1  TFIIA          Transcription factor IIA, alpha/beta subunit
        4.3    6.8   9.0        6.7    6.2   9.0    1.3  1  Tsc35          Testis-specific protein 35
        6.1    5.0  30.4          7    4.8  30.4    1.1  1  PAT1           Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> SPOR  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.1   9.4e+03      54      62 ..      24      32 ..      22      40 .. 0.58
   2 ?   -1.9   0.4         1   4.6e+03      34      34 ..     132     132 ..     119     159 .. 0.57
   3 !   58.2   0.0   1.8e-19   7.9e-16       3      73 ..     211     277 ..     209     280 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.1
                CCHHHHHHH CS
        SPOR 54 reeAqaalk 62
                +eeA+a+++
  CTQ27928.1 24 KEEAEAMQN 32
                455555555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1
                 . CS
        SPOR  34 v 34 
                 +
  CTQ27928.1 132 Q 132
                 2 PP

  == domain 3  score: 58.2 bits;  conditional E-value: 1.8e-19
                 TBB--BS-EES-HHHHHHHHHHCCHHT--...EEECCSSSCEEEEESSBCTCCHHHHHHHHCHHHHTTS-- CS
        SPOR   3 ggytvQvgafsseanAerlaakLrakgfaaavavvsgggglyrVrvGpfasreeAqaalkkLkaaagisaf 73 
                 + +++Q+g+f+  ++Ae+++a+L+ +gfa   + +++++g+ rV++Gp + +e A++++ +Lk  ag + +
  CTQ27928.1 211 RSWMIQCGSFKGAEQAETVRAQLAFEGFA---SHITTNNGWNRVVIGPLKGKESANEMITRLK-MAGHANC 277
                 68***************************...*******************************.4454444 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  33.6   8.3e-06     0.037     133     260 ..      65     200 ..      19     265 .. 0.46

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.3e-06
       TFIIA 133 tlqtasgqlykvnvqasgaqqiaaqplqqvvqq..........sqgsaaqssvaalqaqsqqaqalaepqqqlekqqqq.qqqqqqqqqqqqvqqqqqe 220
                 t +ta g+++k +  + +++q++aq+++ + qq          +q +a+ +++ + q+   q+q++a++qq ++ q+q+ qqq++ +qq++ vqqqq +
  CTQ27928.1  65 TEPTAGGEVMKPEQLTDEQRQLLAQMQADMRQQptqltevpwnEQTPAQRQQTLQRQRL-AQQQQQAQQQQWAQTQAQTvQQQPPRVQQPKPVQQQQPK 162
                 34445556555555444444444444444433233233334333333333333332322.222222222222222333323333333333355555554 PP

       TFIIA 221 esqqaqqasqe.qvagsqvessqtdgaedaleeespv..lege 260
                 +  ++qq+ q+  +++++++ +q   ++     ++pv  +e  
  CTQ27928.1 163 QTVSNQQPYQDlLQTPAHTNTTQPRTQA-----AAPVtrVEEA 200
                 4444444433332222222222222111.....1112111111 PP

>> Tsc35  Testis-specific protein 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   9.0    0.0015       6.7      89     166 ..      85     164 ..      78     192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0015
       Tsc35  89 eimkemqkdmdekmdvliniqknnklPlrrgpkeq.qelrllgktdkdpqlrlkkvdgadgapl.alekktlalqktkkd 166
                 +++ +mq dm ++   l ++  n++ P +r++  q q l + +++ ++ q   ++ + +++ p  + + k +++q++k+ 
  CTQ27928.1  85 QLLAQMQADMRQQPTQLTEVPWNEQTPAQRQQTLQrQRLAQQQQQAQQQQWAQTQAQTVQQQPPrVQQPKPVQQQQPKQT 164
                 56789**********************99988765488889888899999999999988776650555688888888864 PP

>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  30.4    0.0016         7     204     329 ..      86     189 ..      19     243 .. 0.36

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0016
        PAT1 204 mraqakkkaaqaaaaaaasqqPaaeqaeqaeaaaqaakaeqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilqrpqskqakpaepsasseaqeakq 302
                 + aq ++  +q+++  + +++P +eq+                    + +++ q+q+ a+q+qq  +q+++ +++q ++ +q+ p  +++++ +q++ +
  CTQ27928.1  86 LLAQMQADMRQQPT--QLTEVPWNEQTPA------------------QRQQTLQRQRLAQQQQQ--AQQQQWAQTQAQTVQQQPPRVQQPKPVQQQQPK 162
                 11111111111111..1112222111111..................11111111111111111..111111111111111111111111111111111 PP

        PAT1 303 qappakvqptq.ilqnpnrlaarlelsq 329
                 q+ + ++qp q +lq p  ++++ + +q
  CTQ27928.1 163 QTVS-NQQPYQdLLQTPAHTNTTQPRTQ 189
                 1111.11222212222222211111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2855  (0.159239); expected 358.6 (0.02)
Passed bias filter:                      679  (0.0378716); expected 358.6 (0.02)
Passed Vit filter:                       123  (0.00686039); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 1963.89
//
Query:       CTQ27929.1  [L=342]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-42  144.9   0.0    6.1e-42  143.8   0.0    1.6  2  Peripla_BP_3  Periplasmic binding protein-like domain
    1.1e-34  120.2   0.0    1.6e-34  119.7   0.0    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    1.9e-19   69.1   0.5    3.9e-19   68.2   0.5    1.5  1  LacI          Bacterial regulatory proteins, lacI family
    2.1e-13   50.4   0.0    9.9e-13   48.3   0.0    1.9  1  Peripla_BP_4  Periplasmic binding protein domain
  ------ inclusion threshold ------
      0.067   12.6   0.2       0.14   11.6   0.2    1.6  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.6   5.8e+03      10      56 ..      68     112 ..      62     134 .. 0.70
   2 !  143.8   0.0   1.7e-45   6.1e-42       1     166 []     176     337 ..     176     337 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.6
                   -EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SS CS
  Peripla_BP_3  10 rriafiggegdrgasasderergfrqaleelglplnetvvaaddpaa 56 
                   r+i +i   +d  +++  e+ rg + +++e+g+ + +  +a++ + +
    CTQ27929.1  68 RTILVIV--PDICDPFFSEVIRGIEVTAAEHGYLVLIGDCAHQNQKE 112
                   6667777..55566777888888888888998887776666655544 PP

  == domain 2  score: 143.8 bits;  conditional E-value: 1.7e-45
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC..-SEEEEESSCCHHHHHHHHHCC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaa..lPtAviaasDelAlgvlqalre 95 
                   v++L+elGh+ri++i+  g+ + +  + r++g+ qal++ g++++++++a   ++ +a+a+a +   +l + +  +PtAv+++sD++Alg+l+ +++
    CTQ27929.1 176 VNYLHELGHQRIGCIA--GPEDMPLCHYRLQGYVQALRRSGITVDPHYIARGNFTFEAGANALE---QLLA-QpvPPTAVFCHSDVMALGALSLAKR 266
                   689*************..8888888888*********************999999999988866...4422.2469********************* PP

                   TT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  96 aglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   +gl+vP+dls++gfd+++l+++++PplTtv+qp  ++Gr+ + lll++++g++ +  ++ll +el++R+St
    CTQ27929.1 267 RGLKVPDDLSIVGFDNIALSEFCDPPLTTVSQPRFDIGREGMLLLLEQMQGHNVNSGSRLLDCELIVRGST 337
                   ****************9999**************************************************8 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   4.4e-38   1.6e-34       2     259 ..      68     315 ..      67     330 .. 0.92

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 4.4e-38
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH..HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS- CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla..kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvP 96 
                    ++++++p+  +Pff +++ gi+ +a+ehg+ vl + +  +++++    idl+ +k+idg+++ +s   fd+ ++ ++  +p + +++ +     +P
    CTQ27929.1  68 RTILVIVPDICDPFFSEVIRGIEVTAAEHGYLVL-IGDCAHQNQKekTFIDLIITKQIDGMVLLSSRLPFDASVEEQRN-LPPMVMSNEFAPELELP 162
                   589****************************765.55555555444789***********************9999999.888888888777789** PP

                   EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-SSHHH CS
  Peripla_BP_1  97 cvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaivaindea 191
                   +v  d+ +a+ ++  +L + gh+r i +++gpe     ++r qG+ +al+ +G  v    +a g  + e++a+al++ll ++  P+  a+ + +d +
    CTQ27929.1 163 TVHIDNLTAAFNAVNYLHELGHQR-IGCIAGPEDMPLCHYRLQGYVQALRRSGITVDPHYIARGNFTFEAGANALEQLLAQPvpPT--AVFCHSDVM 256
                   ************************.*****************************999999***********************999..********* PP

                   HHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH CS
  Peripla_BP_1 192 alGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqki 259
                   alGa   +k +G lk +++      s v++d++     + + ++pl++ + pr  +Gr+    +l+ +
    CTQ27929.1 257 ALGALSLAKRRG-LKVPDDL-----SIVGFDNI---ALSEFCDPPLTTVSQPRFDIGREGMLLLLEQM 315
                   ************.*******.....********...8899******************9999888866 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.5   1.1e-22   3.9e-19       1      46 []      11      56 ..      11      56 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 1.1e-22
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                t+kDVA +A+VS+aTVSr L+n+++Vs++tr+rVe+a+ e++Y P+
  CTQ27929.1 11 TMKDVALKANVSTATVSRALMNPDKVSQATRNRVEQAALEVGYLPQ 56
                9******************************************995 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   2.7e-16   9.9e-13       2     253 ..      71     314 ..      70     319 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 2.7e-16
                   EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-.EEEEESTTGCTTT-CE CS
  Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGI.pVvafdsddapsgerl 97 
                    v+v+d  +pffs++  g+e  a+e g+ v + gd   ++++++ +i+ +i+k+ dg ++ +   +   + +++  +++  p+v  + +  + +  l
    CTQ27929.1  71 LVIVPDICDPFFSEVIRGIEVTAAEHGYLVLI-GDCAHQNQKEKTFIDLIITKQIDGMVLLSSRLP-FDASVEE--QRNLpPMVMSNEF--APELEL 161
                   68999***********************8888.9999999****************9998877764.4455555..3556267777777..9***** PP

                   EEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHH.TTTECEEEESSC CS
  Peripla_BP_4  98 ayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaeva.ganwdaekaqqaleallt.anpldgilaand 192
                     v +dn +a+  + +yl e   ++   +  +aG  + p  ++r++g  ++l+  +gi++ + ++  +n + e + +ale+ll+ + p  ++++ +d
    CTQ27929.1 162 PTVHIDNLTAAFNAVNYLHELGHQR---IGCIAGPEDMPLCHYRLQGYVQALRR-SGITVDPHYIaRGNFTFEAGANALEQLLAqPVPPTAVFCHSD 254
                   *********************9976...9999**********************.99999997776779***************66689******** PP

                   CHHHCHHHHHHHTTT.TSTEE.EEEES-HHHHH.HHHHTTSSEEEEE--HHHHHHHHHHHHHHH CS
  Peripla_BP_4 193 gmaegalealeaagl.agkvv.vtgqDatpeal.eaikdGtidatvaqdpyelgyaavelaval 253
                   +ma+gal+  +  gl  ++++ ++g+D+    l e+ +    + tv+q+ +++g+ ++ l++++
    CTQ27929.1 255 VMALGALSLAKRRGLkVPDDLsIVGFDNIA--LsEFCDPPL-T-TVSQPRFDIGREGMLLLLEQ 314
                   ***************744444599998643..313333333.3.56666666666666666555 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   3.8e-05      0.14      26      48 ..       9      30 ..       5      32 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.8e-05
  HTH_Tnp_ISL3 26 esrsvkavArqlgvSwtTVwril 48
                     ++k+vA   +vS+ TV r+l
    CTQ27929.1  9 AA-TMKDVALKANVSTATVSRAL 30
                  55.******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2598.24
//
Query:       CTQ27930.1  [L=58]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 492.67
//
Query:       CTQ27931.1  [L=731]
Description: Primosome factor n' (replication factor Y) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-32  110.8   0.0    5.1e-32  109.6   0.0    1.7  1  PriA_3primeBD   3′ DNA-binding domain (3′BD)
    3.4e-19   69.5   0.1    3.9e-18   66.1   0.0    2.8  3  PriA_C          Primosomal protein N C-terminal domain
    2.5e-15   56.7   0.0    4.2e-15   56.0   0.0    1.4  1  DEAD            DEAD/DEAH box helicase
    8.2e-13   48.7   0.0    1.5e-12   47.9   0.0    1.4  1  ResIII          Type III restriction enzyme, res subunit
    8.1e-10   39.0   0.0      7e-05   23.1   0.0    2.6  2  Helicase_C      Helicase conserved C-terminal domain
    2.2e-08   34.0  15.3    2.2e-08   34.0  15.3    2.9  3  PriA_CRR        PriA DNA helicase Cys-rich region (CRR) domai
     0.0025   17.6   1.6      0.016   15.0   0.0    2.5  3  AAA_30          AAA domain
     0.0079   16.2   4.5      0.016   15.1   4.5    1.5  1  zinc-ribbons_6  zinc-ribbons
  ------ inclusion threshold ------
      0.048   12.6   0.0      0.089   11.7   0.0    1.3  1  TrwB_AAD_bind   Type IV secretion-system coupling protein DNA
      0.094   13.0   0.0       0.31   11.3   0.0    1.8  2  AAA_19          AAA domain
      0.097   12.4   2.9       0.87    9.4   0.3    2.5  2  zinc_ribbon_5   zinc-ribbon domain
       0.12   12.6   0.0         19    5.5   0.0    2.6  2  LAL_C2          L-amino acid ligase C-terminal domain 2
       0.14   12.4   0.0       0.75   10.1   0.0    2.3  2  AAA_22          AAA domain
       0.35   10.6   0.1       0.35   10.6   0.1    3.0  3  zf-H2C2_5       C2H2-type zinc-finger domain
       0.95    9.5  11.5         13    5.9   6.3    2.7  2  Zn_Tnp_IS1595   Transposase zinc-ribbon domain


Domain annotation for each model (and alignments):
>> PriA_3primeBD  3′ DNA-binding domain (3′BD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.0   4.3e-35   5.1e-32       2      96 .]       6     100 ..       5     100 .. 0.99

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 4.3e-35
  PriA_3primeBD   2 VavdlpldrtfdYrvpeelevkiGsrVlVpfgkrklvGiVvalkeeseveeeklkpieevldeepllteellelaewlaeyylaplgevlkaalP 96 
                    Va+++pl+rtfdY++pe ++vk+G+rV+Vpfgk++++GiV a++e+se++ ++lkp+ e ld+ep+++  +++l+ w+aeyy++p+g+vl  alP
     CTQ27931.1   6 VALPVPLPRTFDYLLPEGMAVKAGCRVRVPFGKQERIGIVAAVSERSELPLDELKPVAEALDDEPVFSTTVWRLLMWAAEYYHHPIGDVLFHALP 100
                    9********************************************************************************************99 PP

>> PriA_C  Primosomal protein N C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.6   3.1e+03      40      57 ..     253     270 ..     224     297 .. 0.67
   2 ?   -2.7   0.0       9.3   1.1e+04      41      54 ..     400     413 ..     374     417 .. 0.74
   3 !   66.1   0.0   3.2e-21   3.9e-18       1      94 []     631     728 ..     631     728 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.6
      PriA_C  40 ilgpapapiakikgryry 57 
                  +g +p  ia+ ++r+ +
  CTQ27931.1 253 EIGLTPQTIARFRQRFNA 270
                 467778888888777754 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 9.3
      PriA_C  41 lgpapapiakikgr 54 
                  g +pa i++++++
  CTQ27931.1 400 AGLSPALISRMRQH 413
                 58899999999876 PP

  == domain 3  score: 66.1 bits;  conditional E-value: 3.2e-21
      PriA_C   1 PFsrlalirvsgkdeekveeaaeelaellkealkl..eeveilgpapapiakikgryryqillksksrkalqkllkellekleklk...kvrvsiDvDP 94 
                 P+++ +lir+++++ +++  ++++l++ll+++  l  e++ +lgp+pa  +k+ gr+r+qill+++sr +lq++++  l+ +++l+   kv++ +DvDP
  CTQ27931.1 631 PWTSHVLIRAEDHNNQQAPLFLQQLRNLLQASP-LadEKLWVLGPVPALAPKRGGRWRWQILLQHPSRVRLQHIVSGTLALINTLPearKVKWVLDVDP 728
                 9999**************************963.2357789******************************************9999988********9 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   3.5e-18   4.2e-15      16     173 ..     218     363 ..     199     366 .. 0.76

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 3.5e-18
                 EEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEE.EEETTSSHHHHHHHHHTT.CSEEEEEHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
        DEAD  16 dvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvl.liiggvaardqlskldng.vdivvgtpgrlddll 112
                   l+a+ TGsGKT+++l  vl++v      +g +al+++P   L+ qt+ +++++++   ++vl + ++++++ + + k +ng + iv+gt + l+   
  CTQ27931.1 218 AWLLAGITGSGKTEVYLS-VLENV----LAQGRQALVMVPEIGLTPQTIARFRQRFNA-PVEVLhSGLNDSERLSAWLKAKNGeAAIVIGTRSSLFT-- 308
                 4569999********875.55566....36899************************5.3344435555666666666667779***********98.. PP

                 HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
        DEAD 113 stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdv 173
                       ++++ ++V+DE +  + + +++ ++  ++ l+      ++q  +i+ SAT+  +++
  CTQ27931.1 309 -----PFKDLGVIVIDEEHDSSYK-QQEGWRYHARDLAV-WRAHSEQIPIILGSATPAlETL 363
                 .....389**************99.88888888899954.444446888*******987665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   1.3e-15   1.5e-12       2     169 ..     196     358 ..     195     360 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 1.3e-15
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--... CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke.igkkvsgdkkka... 96 
                 l+l+  Q++a+ ++ ++   +r    l++  TG+GKT v++++ e++l +g+  ++l++vp++ l+ qt+ +f++ ++ +++  +    sg ++++   
  CTQ27931.1 196 LRLNTEQATAVGAIHSAA--DRFSAWLLAGITGSGKTEVYLSVLENVLAQGR--QALVMVPEIGLTPQTIARFRQRFNAPVEVlH----SGLNDSErls 286
                 568889999999999887..5999*************************988..9************************976543....3333333344 PP

                 .........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T............TTHHHHHT---SEEEEEESS- CS
      ResIII  97 ..kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk............swreilekfkeavllglTATp 169
                    + ++ ++ i++ t +sl  +             +   vi+iDE H +++k+             wr+  e++   ++lg +ATp
  CTQ27931.1 287 awLKAKNGEAAIVIGTRSSLFTPF------------KDLGVIVIDEEHDSSYKQqegwryhardlaVWRAHSEQI--PIILG-SATP 358
                 699999******************............7788************83454444444444555544444..48888.8888 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   8.1e-05     0.096       7      74 ..     238     303 ..     230     305 .. 0.86
   2 !   23.1   0.0   5.9e-08     7e-05      56     111 .]     521     588 ..     491     588 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.1e-05
                 HHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESG CS
  Helicase_C   7 lellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatd 74 
                  + l   ++g+++l++v+ i    + +  ++++++  v vlh+ l+ +er+ +  + ++ge  ++i t+
  CTQ27931.1 238 ENVL---AQGRQALVMVPEIGLTPQtIARFRQRFNAPVEVLHSGLNDSERLSAWLKAKNGEAAIVIGTR 303
                 4445...8999**********4433469999999********************************996 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 5.9e-08
                 HHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH............HHHHHHHTTSSSTT CS
  Helicase_C  56 eeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv............tsyiqriGRtgRag 111
                 ee l++  +g  ++Li t+++++G  +p+v+lV  +d++  +            + y q +GR+gRag
  CTQ27931.1 521 EEHLAAVHRGGARILIGTQMLAKGHHFPDVTLVSLLDVDGALfsadfrsaerfaQLYTQVSGRAGRAG 588
                 466667778999***************************444444566667777************97 PP

>> PriA_CRR  PriA DNA helicase Cys-rich region (CRR) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.081        96      16      24 ..     432     440 ..     429     441 .. 0.86
   2 !   34.0  15.3   1.8e-11   2.2e-08       1      27 []     444     470 ..     444     470 .. 0.99
   3 ?   -2.7   0.5       5.4   6.4e+03       1       5 [.     475     479 ..     475     481 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.081
    PriA_CRR  16 rLrCHyCgy 24 
                  L CH Cg+
  CTQ27931.1 432 ALLCHDCGW 440
                 799****96 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 1.8e-11
    PriA_CRR   1 CpnCdvsltyHksrnrLrCHyCgyteP 27 
                 Cp+Cd ++t+H+ +++LrCH+C++++P
  CTQ27931.1 444 CPRCDSYYTLHQAQHHLRCHHCDSQRP 470
                 **************************9 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.4
    PriA_CRR   1 CpnCd 5  
                 Cp+C 
  CTQ27931.1 475 CPSCG 479
                 99996 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.27   3.2e+02     139     175 ..     117     150 ..     104     162 .. 0.76
   2 !   15.0   0.0   1.3e-05     0.016       2      82 ..     198     303 ..     197     330 .. 0.58
   3 ?   -3.9   0.0         8   9.5e+03     148     175 ..     357     384 ..     354     391 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.27
      AAA_30 139 dlveaagigtaeLtevvRqkeseeraaalalregdae 175
                 +  ++++ +++ L+++ R +  ++++a  alr+g++ 
  CTQ27931.1 117 WF-ATEQGQVVDLNSLKRSR--KQQQALAALRQGKIW 150
                 44.467889999****9995..688899999999875 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.3e-05
      AAA_30   2 lnaeQaaavealltsgdrva..vltGpAGtGKttalkalreaweaag......grviglAptgkaAkvLaeelgieastiakllkrlk........... 81 
                 ln+eQa+av a+++  dr++  +l G  G+GKt +  ++ e + a+g       + igl+p+    ++ ++ ++++ + +++ l+  +           
  CTQ27931.1 198 LNTEQATAVGAIHSAADRFSawLLAGITGSGKTEVYLSVLENVLAQGrqalvmVPEIGLTPQTI--ARFRQRFNAPVEVLHSGLNDSErlsawlkakng 294
                 99**************999833579********9876665555555523443222233333333..344444444444444444333344433333335 PP

      AAA_30  82 ........g 82 
                         +
  CTQ27931.1 295 eaaivigtR 303
                 555555550 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 8
      AAA_30 148 taeLtevvRqkeseeraaalalregdae 175
                 t  L++++  ++ ++r+++l  r g+a+
  CTQ27931.1 357 TPALETLHNVRQGKYRQLTLSKRAGNAR 384
                 4556666666666777777777777665 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   4.5   1.4e-05     0.016       2      37 ..     443     480 ..     442     491 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.4e-05
                     --SSS-S--E..E-SSEEE-TTT--EEEEEEE-SSS-S CS
  zinc-ribbons_6   2 kCpeCqqele..krgeqyhCeaCqedlkkealCpeCeq 37 
                     +Cp+C++  +  + +++++C++C+++      Cp C++
      CTQ27931.1 443 ECPRCDSYYTlhQAQHHLRCHHCDSQRPIPRQCPSCGS 480
                     7*****98776466799*******************97 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.4e-05     0.089      18      50 ..     219     251 ..     208     267 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.4e-05
  TrwB_AAD_bind  18 ilivGttGsGKtqalekllrairargdraivlD 50 
                     l++G tGsGKt++  + l+++ a+g +a+v+ 
     CTQ27931.1 219 WLLAGITGSGKTEVYLSVLENVLAQGRQALVMV 251
                    5899*************************9975 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00026      0.31      13     117 ..     219     327 ..     205     331 .. 0.76
   2 ?   -2.6   0.0       5.3   6.3e+03      54      90 ..     617     650 ..     609     671 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00026
      AAA_19  13 llvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelle..........eaeeekklq 101
                  l+ +  G+GKT+v   +++ ++++g++++  +  + +t +   + r+r    +a+ + +H+   l+  ++l+ +l++ +          +++  ++++
  CTQ27931.1 219 WLLAGITGSGKTEVYLSVLENVLAQGRQALVMVPEIGLTPQTIARFRQRF---NAPVEVLHSG--LNDSERLSAWLKA-KngeaaivigtRSSLFTPFK 311
                 4566669*******************999999999***************...9*******66..5555555455555.24777777777445556775 PP

      AAA_19 102 eeellivDEfqdvdel 117
                 +  ++++DE  d +  
  CTQ27931.1 312 DLGVIVIDEEHDSSYK 327
                 5559999998887744 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.3
      AAA_19  54 AakelrerlaalgaeatTiHrlalldfddlltealel 90 
                 A + l+er  +++++  T H l  + ++d +++++ l
  CTQ27931.1 617 AEQALAERQ-TMQLPPWTSHVL--IRAEDHNNQQAPL 650
                 556677777.788999999999..6666666554443 PP

>> zinc_ribbon_5  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00073      0.87       2      32 ..     441     466 ..     440     467 .. 0.88
   2 ?    2.6   0.2       0.1   1.2e+02       4      11 ..     474     481 ..     473     484 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00073
  zinc_ribbon_5   2 iirCpdCdtkFklvdsklKksgkkVrCakCa 32 
                    i  Cp Cd+ + l + +        rC +C 
     CTQ27931.1 441 IAECPRCDSYYTLHQAQ-----HHLRCHHCD 466
                    678********998777.....99******6 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.1
  zinc_ribbon_5   4 rCpdCdtk 11 
                    +Cp C+++
     CTQ27931.1 474 QCPSCGST 481
                    8*****98 PP

>> LAL_C2  L-amino acid ligase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.016        19      32      61 ..      25      54 ..      23      67 .. 0.84
   2 ?    4.1   0.0     0.044        53       8      30 ..     705     727 ..     700     729 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.016
      LAL_C2 32 tvkpGdevrpprssgdrlGyviatgdtaee 61
                 vk+G +vr p    +r+G v a+ + +e 
  CTQ27931.1 25 AVKAGCRVRVPFGKQERIGIVAAVSERSEL 54
                699*********************998775 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.044
      LAL_C2   8 pGrlkaveGleearalpgvveve 30 
                 +G+l+ ++ l ear++++v++v+
  CTQ27931.1 705 SGTLALINTLPEARKVKWVLDVD 727
                 7********************97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00063      0.75       9     103 ..     220     324 ..     215     363 .. 0.67
   2 ?   -1.5   0.0       2.4   2.8e+03      52      89 ..     362     417 ..     324     423 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00063
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst....sskdllrellralglelkaerlsseellealeqalrarav............ 91 
                 ++ G +G+GKT ++  +le+  +       + ++++v +p+ +    + + +++++   +++ +++  ++se+l + l     ++a             
  CTQ27931.1 220 LLAGITGSGKTEVYLSVLENVLA-------QGRQALVMVPEIGltpqTIARFRQRFNAPVEVLHSG-LNDSERLSAWLKAKNGEAAIvigtrsslftpf 310
                 688*****************965.......333343333333333556999999999999998888.66666666444443333333588888888888 PP

      AAA_22  92 ..ielliiDEaqhl 103
                    ++++iDE +  
  CTQ27931.1 311 kdLGVIVIDEEHDS 324
                 88899999997765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.4
      AAA_22  52 sskdllrellralglelka..................erlsseellealeqalrar 89 
                 ++ ++++   r+l+l++ a                  + + s +l+++++q+l+a 
  CTQ27931.1 362 TLHNVRQGKYRQLTLSKRAgnarpaqqhvldlkgqplQAGLSPALISRMRQHLQAD 417
                 45555555555555555555544433344333333333355556667777777665 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       2.3   2.7e+03      14      21 ..     408     415 ..     407     416 .. 0.82
   2 ?    0.8   1.0      0.36   4.4e+02       2       7 ..     461     466 ..     460     466 .. 0.90
   3 ?   10.6   0.1    0.0003      0.35       9      26 .]     513     530 ..     513     530 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.3
   zf-H2C2_5  14 snLkRHlr 21 
                 s +++Hl+
  CTQ27931.1 408 SRMRQHLQ 415
                 679***97 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.36
   zf-H2C2_5   2 KCsqCD 7  
                 +C +CD
  CTQ27931.1 461 RCHHCD 466
                 9****9 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.0003
   zf-H2C2_5   9 stawksnLkRHlrrkHtg 26 
                 +t++k+ L++Hl+++H g
  CTQ27931.1 513 TTSRKGALEEHLAAVHRG 530
                 79**************97 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   6.3     0.011        13      20      46 .]     443     468 ..     422     468 .. 0.83
   2 ?    5.7   0.2     0.012        14      19      29 ..     473     483 ..     469     492 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.011
  Zn_Tnp_IS1595  20 vCPhCgsr.kayriktrglfqCkeCrkq 46 
                     CP+C s  ++++ ++   ++C +C  q
     CTQ27931.1 443 ECPRCDSYyTLHQAQH--HLRCHHCDSQ 468
                    6*****6666666666..*******876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.012
  Zn_Tnp_IS1595  19 fvCPhCgsrka 29 
                    + CP Cgs+++
     CTQ27931.1 473 RQCPSCGSTHL 483
                    67******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5011.74
//
Query:       CTQ27932.1  [L=54]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 448.77
//
Query:       CTQ27933.1  [L=70]
Description: 50S ribosomal subunit protein L31 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-29  102.2   0.2    1.5e-29  102.0   0.2    1.0  1  Ribosomal_L31   Ribosomal protein L31
  ------ inclusion threshold ------
      0.055   13.4   0.8       0.17   11.8   0.8    1.8  1  Zn_ribbon_SprT  SprT-like zinc ribbon domain


Domain annotation for each model (and alignments):
>> Ribosomal_L31  Ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.2   1.6e-33   1.5e-29       1      66 [.       1      64 [.       1      65 [. 0.98

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 1.6e-33
  Ribosomal_L31  1 mKkgiHPeyrevvvkcacgeefltrStlkekpeikvdvcsksHPfYtGkqklvdtaGrvekFkkry 66
                   mKkgiHP+y e++ +c+cg+ +++rSt    +++++dvc k+HPf+tGkq+ v t+Grv++F+kr+
     CTQ27933.1  1 MKKGIHPNYDEITATCSCGNVMKIRST--VGHDLNLDVCGKCHPFFTGKQRDVATGGRVDRFNKRF 64
                   9**************************..699*********************************9 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8   1.9e-05      0.17       4      37 ..      13      47 ..      11      48 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.9e-05
  Zn_ribbon_SprT  4 vYrCtgCgreythhlsi.rrhn.YrCrrCkgtLrgk 37
                    +++C +Cg+  + ++++    n   C++C+ +++gk
      CTQ27933.1 13 TATC-SCGNVMKIRSTVgHDLNlDVCGKCHPFFTGK 47
                    789*.***8777777776555599******999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 559.19
//
Query:       CTQ27934.1  [L=105]
Description: DNA-binding transcriptional repressor, S-adenosylmethionine-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-58  194.8   0.0    1.7e-58  194.6   0.0    1.0  1  MetJ       Met Apo-repressor, MetJ
  ------ inclusion threshold ------
      0.033   13.9   0.0      0.036   13.7   0.0    1.1  1  SWI2_SNF2  SWI2/SNF2 ATPase
      0.094   12.4   0.0       0.11   12.3   0.0    1.1  1  AphA_like  Putative AphA-like transcriptional regulator


Domain annotation for each model (and alignments):
>> MetJ  Met Apo-repressor, MetJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.6   0.0   2.8e-62   1.7e-58       1      97 []       3      99 ..       3      99 .. 0.99

  Alignments for each domain:
  == domain 1  score: 194.6 bits;  conditional E-value: 2.8e-62
        MetJ  1 kwngeyispyaehgkkseqvkkvtvsiplkvlkvltdertrrqvnnlrhatnsellceaflhaftgqplpddedlrkdnedkipkevkelleekgid 97
                +w+geyispyaehgkkseqvkk+tvsiplkvlk+ltdertrrqvnnlrhatnsellceaflhaftgqplp+dedlrk+++d+ip+++k +++e gid
  CTQ27934.1  3 EWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPNDEDLRKERSDEIPEAAKAIMRELGID 99
                6*********************************************************************************************996 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     6e-06     0.036     121     162 ..      33      75 ..       8      88 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6e-06
   SWI2_SNF2 121 niivlvDEaHRsqygelakkl.rkalpnaafigFTGTPilkkd 162
                  + +l+DE  R q ++l++    + l +a + +FTG P+ +++
  CTQ27934.1  33 VLKILTDERTRRQVNNLRHATnSELLCEAFLHAFTGQPLPNDE 75 
                 46699*********998666515678899999*******9865 PP

>> AphA_like  Putative AphA-like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.8e-05      0.11     100     138 ..      21      59 ..      13      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
   AphA_like 100 dlsklviaLklrfLdLlevaerraqidlllelvetelar 138
                 ++ k+++++ l+ L++l  ++ r+q+++l +++++el  
  CTQ27934.1  21 QVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLC 59 
                 5899********************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 843.84
//
Query:       CTQ27935.1  [L=386]
Description: cystathionine gamma-synthase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-142  474.5   0.0     2e-142  474.3   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
      4e-08   32.8   0.0    5.6e-08   32.3   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
    0.00036   19.6   0.0    0.00052   19.1   0.0    1.2  1  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  474.3   0.0  3.3e-146    2e-142       2     381 ..       7     380 ..       6     381 .. 0.99

  Alignments for each domain:
  == domain 1  score: 474.3 bits;  conditional E-value: 3.3e-146
                      HHHHHTTTTCHTTTTBSS--B---SBBBESSHHHHCTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEEE CS
  Cys_Met_Meta_PP   2 TllvhagqekdeqtgavavpiyltstykfkdvdeafageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaGdeiv 95 
                      T++v++g ++deq+g+v++pi+l+sty+f+       +e ++++YsR+gnptr+v+++++a+Legg+ a+++++Gm+Ai ++ + +lk Gd +v
       CTQ27935.1   7 TIAVRSGLNDDEQYGCVVPPIHLSSTYNFT-----GFNEPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAILLVTTVFLKPGDLLV 95 
                      99****************************.....99********************************************************* PP

                      EESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGGGT- CS
  Cys_Met_Meta_PP  96 vsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrplklga 189
                      + +d+Ygg++rl+++++k+ + +v+fvd+sd+++l++a+ e+ klv++E+p+npll+vvDi+ki+ la++ag++ vvDntf+sp+lq+pl+lga
       CTQ27935.1  96 APHDCYGGSYRLFDSLAKRGCYRVQFVDQSDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICGLAREAGAISVVDNTFLSPALQNPLALGA 189
                      ********************************************************************************************** PP

                      SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TTSTT CS
  Cys_Met_Meta_PP 190 DivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekvyYpglps 283
                      D+v+hS+TKyl+GhsdvvaGv+++++ +++ +el+++ n++G + s+fd++lllrGl+TLs R+e +q+nAl++ e+L+++p v+k+y+p+lp+
       CTQ27935.1 190 DLVLHSCTKYLNGHSDVVAGVVIAND-PATVTELAWWANNIGVTGSAFDSYLLLRGLRTLSPRMEVAQRNALAIVEYLKTQPLVKKLYHPSLPE 282
                      **************************.999999************************************************************* PP

                      STTHHHHHHHSSSG-SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHH CS
  Cys_Met_Meta_PP 284 hpqhelakkqlkgaggvlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiEdvdDliaDl 377
                      +++he+a++q+kg+g++lsFel+++e++ ++f++ l+lf+laeslGgvesli+++a+mtha + +e+r+aag++++l+R+s GiEd +DliaDl
       CTQ27935.1 283 NQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLSGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADL 376
                      ********************************************************************************************** PP

                      HHHH CS
  Cys_Met_Meta_PP 378 kqal 381
                      ++++
       CTQ27935.1 377 ENGF 380
                      *998 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   9.4e-12   5.6e-08      49     192 ..      57     178 ..      43     211 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 9.4e-12
                    HHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHH.HHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHH CS
  Aminotran_1_2  49 leealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknil.rlsggevvryplyseedfhldlealeealkeap 143
                    ++ ala++ g          +av++ +G +a++ + + +lk  pgd  ++p   y+   + +  l++  ++r+ +      + d +al +al+e  
     CTQ27935.1  57 VQRALAELEG--------GAGAVLTNTGMSAILLVTTVFLK--PGDLLVAPHDCYGGSYRLFdSLAKRGCYRVQFV----DQSDEQALRAALAE-- 136
                    6677888888........666*********99999999998..********9999887777724666668888865....48999*********.. PP

                    CTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTT CS
  Aminotran_1_2 144 egnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYag 192
                        k+k++lvesp+NP   v + ++++ l   a++ +++ +vD ++  
     CTQ27935.1 137 ----KPKLVLVESPSNPLLRVVDIAKICGL---AREAGAISVVDNTFLS 178
                    ....9*************************...***********99865 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   8.7e-08   0.00052      69     202 ..      74     199 ..      53     213 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.7e-08
                  SHHH.HHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHH CS
  Aminotran_5  69 Gtte.ainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigkla 165
                  +t+  ai lv   +   lkpgd  v  +  + +       lakr  ++v+++        d ++l+++l+ek+klv +   sn +  + ++++i+ la
   CTQ27935.1  74 NTGMsAILLVTTVF---LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVQFVDQ-----SDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICGLA 163
                  45554666666666...9999999999998888888999999999999999987.....56677889******************************* PP

                  HHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTTT CS
  Aminotran_5 166 kkkgalvlvDaaqavghipidvkklgvDflafsghKl 202
                  +++ga+ +vD +   +  +  + +lg+D++  s  K+
   CTQ27935.1 164 REAGAISVVDNTFLSPALQNPL-ALGADLVLHSCTKY 199
                  **********998888877555.79999999888884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2832.60
//
Query:       CTQ27936.1  [L=810]
Description: fused aspartokinase II; homoserine dehydrogenase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-44  152.0   0.1    3.2e-44  151.3   0.1    1.3  1  AA_kinase      Amino acid kinase family
    2.1e-43  148.2   0.0    3.6e-43  147.5   0.0    1.3  1  Homoserine_dh  Homoserine dehydrogenase
    2.8e-25   89.3   0.0    9.8e-25   87.5   0.0    2.0  1  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.3   0.1   5.4e-48   3.2e-44       2     238 ..      12     284 ..      11     287 .. 0.89

  Alignments for each domain:
  == domain 1  score: 151.3 bits;  conditional E-value: 5.4e-48
                 EEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....................E..HHHHHHHHH..... CS
   AA_kinase   2 rvVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaa................glrstleeagevatr..... 79 
                 r  +K+GGssl+d+++  + r+a + +++ ++  ++ vV+++gs+t++l++   +ls++   a                g                   
  CTQ27936.1  12 RQLHKFGGSSLADAKC--YLRVAGIMKEY-SQAGDMMVVSAAGSTTNQLISW-LKLSQSDRLAahqvqqslrryhteliG-------------Gllepa 93 
                 6789************..***********.666799****************.666666665333455554444444442.............044445 PP

                 .............................HHHHHHHHHHHHHHHHTTHGEEEE-GGGTCEECCCE....HHHTTTCEEECCHHHHHH..HTT-EEEEES CS
   AA_kinase  80 .............................dalaslgerlvaallaaglpavglsaaaldateagr..degsdgnvesvdaeaieell..eagvvpvltg 145
                                              ++++ +ge ++a+l+aa l++ g+ aa+lda+++ r  +  +++++e ++   +++l+  + ++  v+tg
  CTQ27936.1  94 aadtliaafihdlerlaglldggvseavyAEVVGHGEVWSARLMAAVLNQLGMEAAWLDARAFLRaeRAAQPQVDEGLSYPLLQQLMaqHPNKRLVVTG 192
                 6666666699999**************************************************************************65559******* PP

                 EEEEETTTE...EEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTTCECCEEEHHHCHHCSSS.TTTHHHHCHHHHHHHHHCTT-EEE CS
   AA_kinase 146 figldeege...lgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpdarllpeisvdeaeesaselatgGmkvkhpaalaaarrggipvv 238
                 fi  ++ ge   lgr++sD++a+ ++++ gA ++ i++dV GVy+adp+kv+da llp ++ dea e    la+  + v+h ++l+++  ++i++ 
  CTQ27936.1 193 FISRNQAGEtvlLGRNGSDYSATQIGALAGASRVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASE----LARLAAPVLHARTLQPVSASDIDLQ 284
                 *******************************************************************....*******************999876 PP

>> Homoserine_dh  Homoserine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   0.0   6.1e-47   3.6e-43       1     172 [.     608     803 ..     608     803 .. 0.94

  Alignments for each domain:
  == domain 1  score: 147.5 bits;  conditional E-value: 6.1e-47
                    --HHHH.HHTCTTSEEEEEEEE--HHHHHHHHHHHCHTT-HHHHHHHHHHTTSS-SSTHHHHTTHHHHHHHHHHHHHHCTTT--GGGSEE--ST.. CS
  Homoserine_dh   1 Piiktl.keilsgdritrieGilngtlnyiltemeeegasfsevlkeaqelGyaeaDptdDveGlDaarKlailarlafgleveledvevegis.. 93 
                    P+ +t+ ++i sgd+i  ++Gi++gtl++++ +++     f++++ +a ++G++e+Dp+ D++G D++rKl+ilar+a g+++e+++v+ve++   
     CTQ27936.1 608 PVNHTVrDLIDSGDTILGLSGIFSGTLSWLFLQFDG-TVPFTDLVDQAWQQGLTEPDPRVDLSGKDVMRKLVILAREA-GYDIEPDQVRVESLVpa 701
                    89999999***************************6.556**************************************.**************999 PP

                    ...............TS-HHH...HHHHHCTTEEEEEEEEE...CEEEEEEEEEETTSGGGHSSST-EEEEEEESSSEE..EEEEES-SSHHHHHH CS
  Homoserine_dh  94 ...............kltaed...ikeakeegkvlklvasa...vearVkpelvpkshplasvkgsenavlvetdrlge..lviqGpgaGaepTAs 166
                                   +l+++    +++a+e+g vl++va+     +arV++e+v ++hpla +   +n++++e++ + +  lvi+GpgaG+++TA 
     CTQ27936.1 702 hceegsvdhffengeELNEQMlqrLEAAREMGLVLRYVARFdanGKARVGVEAVREEHPLAALLPCDNVFAIESRWYRDnpLVIRGPGAGRDVTAG 797
                    99999999888888866666566699**************765549********************************99**************** PP

                    HHHHHH CS
  Homoserine_dh 167 avlsDl 172
                    a+ sD+
     CTQ27936.1 798 AIQSDI 803
                    *****8 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.0   1.6e-28   9.8e-25       1     117 []     465     600 ..     465     600 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 1.6e-28
                    --SHHHHHHHHHHHH---S......SEEEEEEEEESS.EEE-TT......HHHHHT--CB---HHHHHHHH.....S-EEEEE-S--HHHHTTHHH CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqse......ielelvavadrd.sllskd......rkallasealtldlddliahl.....dpdvvVEcasseavaelvlk 78 
                    G G+iGs++le+++r+q +      +e+ l++v+d++ sll++d      ++a++++ea+ +d ++l+ ++     d  vv+++++se++a+++l+
     CTQ27936.1 465 GKGNIGSRWLELFAREQTTlsartgFEFILAGVVDSKrSLLNYDgldasrALAFFNDEAVEQDEESLFLWMrahpyDDLVVLDVTASEQLADQYLD 560
                    89************************************************9*******************9***99999***************** PP

                    HHHTTEEEE-S--CGGG.-HHHHHHHTSSSTTS--.EE-G CS
  NAD_binding_3  79 aLkagkdvvtankgala.dealyeeLreaaeangakiyve 117
                    + ++g++v+ ank a a ++++y+++++a+e++g++++++
     CTQ27936.1 561 FASHGFHVISANKLAGAsSSDKYRQIHDAFEKTGRHWLYN 600
                    *************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.40
# Mc/sec: 6004.97
//
Query:       CTQ27937.1  [L=378]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-06   27.6   5.1      4e-06   26.4   5.1    1.6  1  Zn_Tnp_IS1       InsA N-terminal domain
  ------ inclusion threshold ------
      0.047   14.1   0.4        1.4    9.4   0.4    2.4  2  Lar_restr_allev  Restriction alleviation protein Lar
       0.34   10.9   6.9        0.2   11.7   3.4    2.3  2  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
          8    6.5   6.5        1.4    8.9   2.4    1.9  2  zinc_ribbon_4    zinc-ribbon domain


Domain annotation for each model (and alignments):
>> Zn_Tnp_IS1  InsA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   5.1   8.9e-10     4e-06       8      35 .]      74     101 ..      72     101 .. 0.98

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 8.9e-10
  Zn_Tnp_IS1   8 CPrCsstdVyRhGkstagHeRfrCrdCk 35 
                 CP C   d++R G++++g +R  Cr+Ck
  CTQ27937.1  74 CPVCYQRDIIRYGRNPQGTQRLQCRHCK 101
                 ***************************8 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.066     3e+02      28      43 ..      37      52 ..      17      58 .. 0.72
   2 ?    9.4   0.4   0.00031       1.4       6      45 ..      74     112 ..      72     119 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.066
  Lar_restr_allev 28 cvyCadCgastpwfki 43
                       yCa Cg   p f++
       CTQ27937.1 37 ALYCAACGSYPPLFNE 52
                     689*****95555554 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00031
  Lar_restr_allev   6 CPfCggravlersqrvvaeigqcvyCadCga.stpwfkiae 45 
                      CP C++r+++    +++    q  +C  C+   tp+f++++
       CTQ27937.1  74 CPVCYQRDIIRYGRNPQG--TQRLQCRHCKKvWTPKFPHIA 112
                      ********9987766654..579***99*996666666655 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.32   1.5e+03      20      26 ..      39      45 ..      23      56 .. 0.67
   2 ?   11.7   3.4   4.4e-05       0.2      20      45 ..      73     102 ..      60     103 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.32
  Zn_Tnp_IS1595 20 vCPhCgs 26
                    C +Cgs
     CTQ27937.1 39 YCAACGS 45
                   3777776 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.4e-05
  Zn_Tnp_IS1595  20 vCPhCgsrkayrikt....rglfqCkeCrk 45 
                     CP C  r ++r+ +     +++qC++C+k
     CTQ27937.1  73 FCPVCYQRDIIRYGRnpqgTQRLQCRHCKK 102
                    5************99999**********97 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.3   5.7e+03      28      32 ..      40      44 ..      38      45 .. 0.69
   2 ?    8.9   2.4   0.00032       1.4      17      36 .]      86     105 ..      74     105 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.3
  zinc_ribbon_4 28 CskCg 32
                   C++Cg
     CTQ27937.1 40 CAACG 44
                   77776 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00032
  zinc_ribbon_4  17 eklpakgvkvrCskCghvFr 36 
                     + p+++++++C +C++v++
     CTQ27937.1  86 GRNPQGTQRLQCRHCKKVWT 105
                    55689999***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3108.03
//
Query:       CTQ27938.1  [L=518]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-38  132.3   0.1    5.1e-38  130.8   0.0    1.8  2  5_nucleotid_C  5'-nucleotidase, C-terminal domain
    4.1e-12   47.0   2.2    1.7e-11   45.1   1.6    1.9  2  Metallophos    Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> 5_nucleotid_C  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.0   5.7e-42   5.1e-38      17     157 ..     339     476 ..     324     477 .. 0.90
   2 ?   -3.2   0.0      0.96   8.6e+03     115     133 ..     498     514 ..     485     517 .. 0.69

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 5.7e-42
                    H.TS--HHHHHHHHHH..TGSTT--EEEEEGGG----BTTTEEEHHHHHHHS-S--EEEEEEEEHHHHHHHHHH.HTTTTTS--TT-EEEE.SEEE CS
  5_nucleotid_C  17 r.tgetnlgnliadal..raaagadialangggiradlpaGditvkdlltvlpfgntlvvveltGaqlkeaLenesvsaskaasgrflqvs.Glry 108
                        +++lgnl+adal   a  ++++al+n+ggir+++paG ++++ +++ +pf n+lv+++ltG+ql+ ++e+       + s+++lqvs Gl++
     CTQ27938.1 339 AyGISSPLGNLAADALllAAGRSTQMALTNSGGIRNEIPAGAVSMGAVISTFPFPNELVTMDLTGKQLRSLMEH-----GAGLSNGVLQVSrGLEM 429
                    3366899*********777777789************************************************7.....5799************* PP

                    EE-TTS-TT--EEEESSS-BEEE--TTSEEEEEEEHHHHTTGGG-HHHH CS
  5_nucleotid_C 109 tydlskpagervtslsvtvngkpldddktYkvatnsylasggdgfsmlk 157
                    +yd skp g+rv+  ++  ngkp+dd+ +Y++atns+la ggdgf ++ 
     CTQ27938.1 430 KYDSSKPVGQRVVLFRL--NGKPIDDTTVYHIATNSFLADGGDGFVAFT 476
                    *************9966..**************************8886 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.96
                    -TT--EEEESSS-BEEE-- CS
  5_nucleotid_C 115 pagervtslsvtvngkpld 133
                    +ag+++t+ ++  ng+ + 
     CTQ27938.1 498 KAGQKITDEQL--NGQRVV 514
                    45777777755..777665 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   1.6   1.8e-15   1.7e-11       2     203 ..      24     252 ..      23     253 .. 0.72
   2 ?    0.1   0.0      0.11   9.7e+02     109     182 ..     272     349 ..     258     359 .. 0.70

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 1.8e-15
                  EEEEEESBTB.............TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS.....HHHHHHHHHHHHHHHHTSEEEEEC-TTS...CHH CS
  Metallophos   2 rilvigDlHl.............algggqlddllkllddllreekpdlvllaGDlvdrg.....dlekellellaalvkypipvylllGNHe...gfe 78 
                  +i+ ++DlH              ++  g+++++ +++++ ++++++ +++ aGD++ +         k++++ ++ +    +  +++ GNHe   g++
   CTQ27938.1  24 TIIYTNDLHAhvepykvpwiadgKRDIGGWANITTMVKQEKAKNNATWFFDAGDYFTGPyisslTKGKAIIDIMNTMSY--D--AVTIGNHEfdhGWD 117
                  68899******************99***************9999**********9999877777777778888666666..2..********766666 PP

                  H.HHHHHHHHHHHH.HHHHEHH...HCEEETSEEEEEETTE...EEEEEEESECEEE..THHHHHHHHHHHSCHHHHCC.HHHHHH..HHHHTTCSEE CS
  Metallophos  79 e.ellnkygylgif.sepwrsd...aevfnnlplaslgsgs...lkvlllhGgspel..lvsldklgslnleleapepg.dewlkd..lekrekadwv 163
                  +  l+ +++ + i  +++++++   + +   + +++        + v+ lhG    +  +++++ ++++  e      +  +wl++  +e  +k+d +
   CTQ27938.1 118 NtLLQLSQATFPIVqGNIFYQNsdkSFWDKPYTIIE-K--DgvkIGVIGLHGV---FafNDTVSAATRVGIE----ARDeVKWLQHyiDELNGKVDLT 205
                  644444444444436444444444344444444444.3..2347999999999...3222233333333333....22369***************** PP

                  EEEESSESS.CSSSCSCCHHHHH......HHHHHTTESEEEEESSSS CS
  Metallophos 164 ivlgHsply.rgsgylfgdeale......dllkkygvdlvisGHtHv 203
                  ++l H +++ r+s++   d + +      +  + +g+d+ i GH Hv
   CTQ27938.1 206 VALIHEGVPaRQSSQGGTDVRRAldkdiqTAGQVKGLDVLITGHAHV 252
                  *********544444444444448888866688888**********7 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.11
                  EEETTEEEEEEEESECEEE.THHHHHHHHHHHSCHHHHCC.....HHHHHHHHHHTTCSEEEEEESSESS....CSSSCSCCHH CS
  Metallophos 109 slgsgslkvlllhGgspel.lvsldklgslnleleapepg.....dewlkdlekrekadwvivlgHsply....rgsgylfgde 182
                  ++  g  k++l++ + p++ +v+  +l++l  +   p+p+     d w k+     +  +  v++ sp++    +g++ + g+ 
   CTQ27938.1 272 GIDVG--KLVLDYQEKPHQfTVKHFELKTLYADEWKPDPQtkqviDGWNKQ----LDQLVQQVITQSPVEltraYGISSPLGNL 349
                  45555..78888888888888888888888888888888888888777777....66666667777777766666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3799.54
//
Query:       CTQ27939.1  [L=123]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-23   80.4   0.1    9.1e-23   80.1   0.1    1.1  1  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.1   5.1e-27   9.1e-23       1      84 [.      33     117 ..      33     118 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 5.1e-27
                 HHHHHHHHHHHHHHCC.GSSTS-HHHHHHHHHHHHHHTT-HHHH.HHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHH CS
         CMD   1 pellraltalrealla.reggLdpkereLialavsaangceyCv.daHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaae 84 
                 p+++r+l ++ +++++ r+g Ld++ re++++a+++a+g ++ + ++H++a l+ G+t+eei e+++q+a+yag+paa++ l aa+
  CTQ27939.1  33 PDFARYLIEFPFGDIYaRPG-LDLRSREIATIAALTALGNAEPQlKVHIAAGLNVGLTQEEITEAIMQMAVYAGFPAALNGLFAAR 117
                 9***************9999.******************777667*************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1059.29
//
Query:       CTQ27940.1  [L=302]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-21   76.6   0.5    2.4e-21   75.4   0.5    1.7  1  HTH_1           Bacterial regulatory helix-turn-helix protein
      5e-18   65.2   6.2    9.2e-18   64.4   6.2    1.4  1  LysR_substrate  LysR substrate binding domain
     0.0067   16.2   0.2      0.016   15.0   0.2    1.7  1  HTH_30          PucR C-terminal helix-turn-helix domain
     0.0079   16.8   0.1      0.014   15.9   0.1    1.3  1  Mga             Mga helix-turn-helix domain
  ------ inclusion threshold ------
      0.034   13.7   0.0      0.097   12.3   0.0    1.8  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.048   12.8   0.0      0.079   12.1   0.0    1.5  1  PBP_like        PBP superfamily domain
       0.34   10.8   2.6        3.2    7.7   0.1    3.1  3  MarR_2          MarR family


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.5   9.4e-25   2.4e-21       1      60 []      11      70 ..      11      70 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 9.4e-25
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                +r+lr+f  vaee +++rAA++L +sqp ++r+i+ LE++lgv+Lf+R+++gl LT+aG+
  CTQ27940.1 11 IRLLRAFAVVAEENNISRAAQRLFISQPPLTRHIRHLEAQLGVTLFQRHSKGLILTDAGK 70
                689*******************************************************95 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   6.2   3.6e-21   9.2e-18       6     197 ..      99     288 ..      94     297 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 3.6e-21
                     EEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEE.EEEEEEEEETTSGGGGSSSECGG CS
  LysR_substrate   6 grLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLa.eeplvlvaspdhpLargepvsle 99 
                     + Lr+g+++++ + +++ + a++ ++   +++  ++++   l++++++g+lD+a++a+p++ +gl+ +pL  +epl+++++++ p a++  ++l+
      CTQ27940.1  99 QALRLGVTTAFEQGIFAAVEAALSEHTRALHITRHASP--PLAQQVRKGKLDAALVALPLNTEGLHLHPLPyHEPLIAALPASWPEAARPGLTLS 191
                     579***********************************..******************************87*********************** PP

                     GGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTC CS
  LysR_substrate 100 dLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgr 191
                     +L + pl  ++++    + d+ ++ +++ag +p+ + e  + + lla +a G G  llp+s+   ++++ ++ + p++e ++    l+++y +++
      CTQ27940.1 192 ALNHRPLFWFKRERNpgFFDYTRRIFDRAGYAPTYVEEPAEHDVLLARIARGEGMILLPASF--SAIQRQGVAFCPVAEGDAMpLSLGVIYAPHQ 284
                     **********6555556*********************************************..89*************96666*******9997 PP

                     CCHHHH CS
  LysR_substrate 192 elspav 197
                        + v
      CTQ27940.1 285 --AESV 288
                     ..4444 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   6.4e-06     0.016       9      44 ..      20      55 ..      11      61 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.4e-06
                HHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30  9 lenggnisatAkaLhvHrnTlryRLrrieellgldl 44
                +++  nis++A++L+++   l+  +r++e  lg+ l
  CTQ27940.1 20 VAEENNISRAAQRLFISQPPLTRHIRHLEAQLGVTL 55
                46779****************************987 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   5.5e-06     0.014      15      58 ..       7      51 ..       2      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.5e-06
                HSHHHHHHHHHH.HHSEEEHHHHHHHCT--HHHHHHHHHHHHHHC CS
         Mga 15 eslkyqllkflf.eeeevsieelaqelyiSestlkrkikelnklL 58
                +sl+++ll+ +    ee++i + aq+l+iS+  l r+i++l+  L
  CTQ27940.1  7 HSLDIRLLRAFAvVAEENNISRAAQRLFISQPPLTRHIRHLEAQL 51
                689999999876699*************************99876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.8e-05     0.097      21      43 ..      27      49 ..       7      50 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.8e-05
      HTH_24 21 reLAerlglSpstvnrrlkrLee 43
                +  A+rl +S+++++r+++ Le 
  CTQ27940.1 27 SRAAQRLFISQPPLTRHIRHLEA 49
                5569*****************96 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.1e-05     0.079      85     168 ..     189     268 ..     139     295 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.1e-05
                 BGGGC-S-B-EEEEE-TTSHHHHHHHHHHC-CEECTE-SSTTSEEESSHHHHHCCHCCETTCCEC..CCGG-HCCCCCCECTTCE- CS
    PBP_like  85 nwkdladaplrlvnRetGSGtrdlfdellkkegiskssikgyaqearshlavaaaVaagradvgv..gieavaeelkgldfvplae 168
                 ++++l+ +pl +++Re+  G +d+  +   ++g ++     y +e  +h+   a +a+g++ + +  +++a+  + +g+ f p+ae
  CTQ27940.1 189 TLSALNHRPLFWFKRERNPGFFDYTRRIFDRAGYAP----TYVEEPAEHDVLLARIARGEGMILLpaSFSAIQ-R-QGVAFCPVAE 268
                 578899***********************9988887....788899*****************9874556666.4.6******997 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0012       3.2      23      48 ..      25      50 ..       8      50 .. 0.83
   2 ?   -1.0   0.0      0.65   1.7e+03      11      36 ..      90     133 ..      80     135 .. 0.50
   3 ?    1.0   0.0      0.15   3.9e+02       4      19 ..     229     245 ..     227     259 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
                EHHHHHHHHTSSHHHHHHHHHHHHHT CS
      MarR_2 23 tvgelarrlglsksavsrilkrLvaa 48
                +++  a+rl +s++ ++r+++ L+a+
  CTQ27940.1 25 NISRAAQRLFISQPPLTRHIRHLEAQ 50
                78899******************996 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.65
                 HHHHHCTTTS..................EEEHHHHHHHHTSSHH CS
      MarR_2  11 LaaLgrrpgr..................dltvgelarrlglsks 36 
                 L +L+++ ++                  + + +e +r+l+++++
  CTQ27940.1  90 LSELAAHSPQalrlgvttafeqgifaavEAALSEHTRALHITRH 133
                 55555555444444444444444444333344444566666665 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.15
                 -HHHHHHHHH.HHCTTT CS
      MarR_2   4 tpaqarvLaa.Lgrrpg 19 
                 +pa+++vL+a ++r++g
  CTQ27940.1 229 EPAEHDVLLArIARGEG 245
                 599*****998888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2206.37
//
Query:       CTQ27941.1  [L=295]
Description: 5,10-methylenetetrahydrofolate reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-108  362.2   0.0   2.1e-108  362.0   0.0    1.0  1  MTHFR     Methylenetetrahydrofolate reductase


Domain annotation for each model (and alignments):
>> MTHFR  Methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.0   0.0  1.2e-112  2.1e-108       6     287 .]      16     291 ..      11     291 .. 0.97

  Alignments for each domain:
  == domain 1  score: 362.0 bits;  conditional E-value: 1.2e-112
                 HT...SS-EEEEEE---SSHHHHHHHHHHHHHHGGGG-SEEEE---CCCTTHHHHHHHHHHHHHHH-S-EEEEEESTTS-HHHHHHHHHHHHHCT--EE CS
       MTHFR   6 le..egkalisfEffpPkteegernLleridrleevkplfvdvTwgaggstaeltssiakviqqelgleailhlTctdaskeeldkalekakelGirni 102
                 l+  +g++++sfEffpP+t+e+e++L+++idrl+++kp+fv+vT+ga+++++++t+si+k i++++glea+ hlTc+das+ el+ ++++++++Gir+i
  CTQ27941.1  16 LAevQGQINVSFEFFPPRTSEMEQTLWKSIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKERTGLEAAPHLTCIDASRDELRTIAQDYWNNGIRHI 114
                 433689********************************************************************************************* PP

                 EEE--S--TT-GGC---S----SHHHHHHHHHHHHCGGSEEEEEE-TT--TT-S-HHHHHHHHHHHHHCT--EEEEEE-S-HHHHHHHHHHHHHCT-SS CS
       MTHFR 103 lALrGDppkdedkweekeeefkyaldLvrlireeygdlfdigvaaYPevhpeaksleadlkylkeKvdaGAdfiitQlffdvdkflkfveqvreagidi 201
                 +ALrGD+p+++    ++    +ya+dLv l++ e+gd fdi+vaaYPevhpeaks++adl +lk+Kv+aGA+ +itQ+ffdv+++l+f++++ +agid+
  CTQ27941.1 115 VALRGDLPPGSG---KPD---MYAADLVTLLK-EVGD-FDISVAAYPEVHPEAKSAQADLLNLKRKVEAGANRAITQFFFDVESYLRFRDRCVSAGIDV 205
                 **********64...666...8**********.****.************************************************************* PP

                 -EEEEE---SSHHHHHHHHHHHT----HHHHCCCTCHCT-HHHHHHHHHHHHHHHHHHHHHCT--EEEEE-TT--HHHHHHHHHCT CS
       MTHFR 202 piipgimpiksykslkrlaklskvkiPqelldrleeikdddeavkkigielavemvkkllaegvkglHlytlnkekaileileqlg 287
                 +iipgi+p++++k++k++a +++v+iP ++ + +e +++d e+++ +g+++a++mvk l++egvk++H+ytln+++  ++i+++lg
  CTQ27941.1 206 EIIPGILPVSNFKQAKKFADMTNVRIPVWMSKMFEGLDNDAETRQLVGANIAMDMVKILSREGVKDFHFYTLNRAEMSYAICHTLG 291
                 ***********************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2358.39
//
Query:       CTQ27942.1  [L=87]
Description: hypothetical protein CH1034_20081 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 665.14
//
Query:       CTQ27943.1  [L=293]
Description: putative permease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-47  159.8  41.2    1.1e-25   90.4  15.3    2.0  2  EamA      EamA-like transporter family
    6.3e-05   22.5  13.0    0.00024   20.6   2.9    2.0  2  TPT       Triose-phosphate Transporter family
  ------ inclusion threshold ------
       0.51   10.2   1.3       0.79    9.6   1.3    1.2  1  DUF1465   Protein of unknown function (DUF1465)


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7  17.8   6.3e-25   3.8e-21       8     136 ..      14     139 ..      10     140 .. 0.97
   2 !   90.4  15.3   1.9e-29   1.1e-25       2     136 ..     150     287 ..     149     288 .. 0.93

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 6.3e-25
        EamA   8 llaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftl 106
                  l +l+w+++++++k++ +++  + +t++r+++++++l i++l++++ l   +++++ + l ++ll t+ + +l  +al +++a++++++++++P +++
  CTQ27943.1  14 ALLTLIWSFSWIAMKQVTSYIGAFDFTALRCIFGAVVLWIVMLIRGKAL---KPTPFGYTLAIALLQTCGMVGLAQWALMSGGAGKVAILSYTMPFWVV 109
                 57899********************************************...9999******************************************* PP

        EamA 107 ilsvlllgekltlkqllgivlillGvllil 136
                 ++++l+lge++  +q+++i+++ +G++l+l
  CTQ27943.1 110 VMAALFLGERMRRWQYIAIGVACVGLILVL 139
                 ****************************97 PP

  == domain 2  score: 90.4 bits;  conditional E-value: 1.9e-29
        EamA   2 lgillallaalfwaiyfvlskillrkvspl...tltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnasli 97 
                 + +lla+l+ ++w+++++++k+++++++ +   +lt++++l a+++++++a+l  ++   + +  + +l++ ++l+t+la++l++  l++++as+a+l 
  CTQ27943.1 150 KSALLAILSGVSWGAGAIVAKRMYTRYPQVdllALTTWQMLYAAVVMSVVAWLVPQRAVDWQPDVFWALAYSAILATALAWSLWLFVLRNLPASIAGLS 248
                 5689*******************99997774447777****************9999977888778888****************************** PP

        EamA  98 tslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 t+ +Pv+ +++s++ll+e++++ + +gi+li+l++++i+
  CTQ27943.1 249 TLAVPVCGVLFSWWLLHENPGKVEGCGIALIVLALAMIS 287
                 ************************************997 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   2.9     4e-08   0.00024      36     170 ..      36     175 ..      17     187 .. 0.75
   2 !    7.3   3.4   0.00043       2.6      34     138 ..     184     289 ..     167     290 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 4e-08
         TPT  36 avqllvgsvl..ilvlwalglkkrpkisseflkailplalvktlghv.lavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgG 131
                 a+ +++  ++  ++vlw++ l + + ++ + + + l +al++t+g v la+ +l +       ++  ++P++ v++++l+lge++  + y+++ +  +G
  CTQ27943.1  36 AFDFTALRCIfgAVVLWIVMLIRGKALKPTPFGYTLAIALLQTCGMVgLAQWALMSGGAGKVAILSYTMPFWVVVMAALFLGERMRRWQYIAIGVACVG 134
                 44554444441245789998888889999999999999999999998568899999999999999*******************************9** PP

         TPT 132 valasvtElsFnligfisAlisnlt...fslrnifsKkllkk 170
                 ++l  ++  + +++++ sAl++ l+        i++K++ + 
  CTQ27943.1 135 LILV-LQPWQLDFTSLKSALLAILSgvsWGAGAIVAKRMYTR 175
                 9986.6777777777877776655400044556777777666 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00043
         TPT  34 vsavqllv.gsvlilvlwalglkkrpkisseflkailplalv.ktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivg 130
                 +++ q+l   +v+++v+w +  +++ + + ++++a+   a++  +l+  l  + l + + S +     + P+  v++s  ll e++     + +  iv 
  CTQ27943.1 184 LTTWQMLYaAVVMSVVAWLVP-QRAVDWQPDVFWALAYSAILaTALAWSLWLFVLRNLPASIAGLSTLAVPVCGVLFSWWLLHENPGKVEGCGIALIVL 281
                 566676650556666777764.4445666666666666665415578888999********************************************** PP

         TPT 131 Gvalasvt 138
                  +a+ s++
  CTQ27943.1 282 ALAMISIK 289
                 99999986 PP

>> DUF1465  Protein of unknown function (DUF1465)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.3   0.00013      0.79      41      72 ..     178     209 ..     169     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     DUF1465  41 reaalayaseSlrlTTRLmqlasWLLlqRAve 72 
                 + + la++++ +     +m +++WL+ qRAv 
  CTQ27943.1 178 QVDLLALTTWQMLYAAVVMSVVAWLVPQRAVD 209
                 5667889999999999**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2143.00
//
Query:       CTQ27944.1  [L=367]
Description: glycerol dehydrogenase, NAD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-65  220.6   6.4      3e-65  220.4   6.4    1.0  1  Fe-ADH        Iron-containing alcohol dehydrogenase
    2.7e-32  112.4   0.3    3.5e-32  112.1   0.3    1.1  1  Fe-ADH_2      Iron-containing alcohol dehydrogenase
     0.0054   15.9   3.0       0.13   11.4   3.0    2.7  1  DHQ_synthase  3-dehydroquinate synthase


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.4   6.4     5e-69     3e-65       1     363 [.       8     347 ..       8     348 .. 0.90

  Alignments for each domain:
  == domain 1  score: 220.4 bits;  conditional E-value: 5e-69
                 -SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THH.HHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHH CS
      Fe-ADH   1 Ptrivfgkgaleelgellkklgakralivtdkgslkksglld.kvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAK 98 
                 P ++++g+ga+++lg++lk l  +r l+v dk++l   g+++  +++sl++ag++ ++   + ++++  e++++ ++a ++++ +v+++GGG+++DtAK
  CTQ27944.1   8 PGKYIQGAGAIKRLGDYLKPLA-ERWLVVGDKFVL---GFAEeMLRKSLADAGLAAEI-APFGGECSHNEINRLRDIAGNAKCTAVLGIGGGKTLDTAK 101
                 89*******************8.9*********99...66651577899*****9996.779************************************* PP

                 HHHHHTT..................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHH CS
      Fe-ADH  99 aialllanpevedylgegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEayv 197
                 a+a++++                  +p+ + PT+a+t++++++l+vi+ ++ege  s+   + +P+++ivD+++++++P+r++aa+++Dala+++Ea +
  CTQ27944.1 102 ALAHFMN------------------VPVAIAPTIASTDAPCSALSVIY-TDEGEFDSYLMLPRNPNMVIVDTQIIAGAPARLLAAGIGDALATWFEARA 181
                 *******..................9**********************.888888888889************************************** PP

                 H.H.T---TTSS.B--HHHHHHHHHHHHHHHHHHHH..........HHHHHHHHHHHH.HHHHHHSS---HHHHHHHHHHC.CGGG..GGS-HHHHHHH CS
      Fe-ADH 198 s.k.kanplsda.laleairliaknleravadgedl..........eareqmllastl.aglafsnaglgavHalahalgalfgip..hglanaillpa 280
                 + + +a+ +  + ++ +a+ l+  ++ +++++ge++           a e++++a+t+ +g++f+++gl+a+Ha++++++a   ip  h++ +++++++
  CTQ27944.1 182 CsRsGATTMAGGkCTQAALALAELCYNTLLEEGEKAmlaaeqhvvtPALERVVEANTYlSGVGFESGGLAAAHAIHNGMTA---IPdaHHYYHGEKVAF 277
                 *546344433334666666666666666666666555666667888***********99**********************...6666*********** PP

                 HH..........HHHHHHT.......T--HHHHHHHHHHHHHTT---SHHHHT-TT-...HHHHHHHHHT-T.SGGGGSSS---HHH CS
      Fe-ADH 281 vlrfnaeaaperlaqlaralggesdeeaaeeliealrellkelglptsLselgvdee...dldklaeaalkd.rslannpreltaed 363
                 ++          l ql+ +       +a+ ++ie + +l++++glp +L++l+++ +   +++  aeaa+++ ++++n+p  ++ ++
  CTQ27944.1 278 GT----------LTQLVLE-------NAPVDEIETVAALCHSVGLPITLAQLDIKGDiptKMRLGAEAACAEgETIHNMPGGVDSDQ 347
                 **..........9*****9.......9****************************9767677999***************9998876 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.3   5.8e-36   3.5e-32       3     250 .]      14     276 ..      12     276 .. 0.84

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 5.8e-36
    Fe-ADH_2   3 gegaleklgellkelelkkvllvadentkkaagekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsaklnvp 101
                 g ga+++lg++lk l+ ++ l+v d+ +  +a+e +++sl++ag+ +e+   + +e +++e+++l + + ++++++v+++GgG+ +D+ak +++  nvp
  CTQ27944.1  14 GAGAIKRLGDYLKPLA-ERWLVVGDKFVLGFAEEMLRKSLADAGLAAEIAP-FGGECSHNEINRLRDIAGNAKCTAVLGIGGGKTLDTAKALAHFMNVP 110
                 689*********9886.6799***************************776.99***************99**************************** PP

    Fe-ADH_2 102 yvsvpTaaSvDGfaspgaslvvd.gkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklan..........evseplaklsaam 188
                 +++ pT aS D  +s  + +++d g+  ++ +  + P  vi+D++++a AP+rlla+G+GD+l+ +      + +           +++  la+l  ++
  CTQ27944.1 111 VAIAPTIASTDAPCSALSVIYTDeGEFDSYlMLPRNPNMVIVDTQIIAGAPARLLAAGIGDALATWFEARACSRSGattmaggkctQAALALAELCYNT 209
                 ***********************998899988889*******************************966644444334444443332233566666666 PP

    Fe-ADH_2 189 vqeaaeklvedkke...tealeelleal.alsgigisrpaSGsEHliSHaldmlal.kqalHGeqVG 250
                 + e+ ek++ + ++   t ale+++ea   lsg+g+++ +  + H i   + ++   ++  HGe+V+
  CTQ27944.1 210 LLEEGEKAMLAAEQhvvTPALERVVEANtYLSGVGFESGGLAAAHAIHNGMTAIPDaHHYYHGEKVA 276
                 666655555433332346777999998559*****************88888774437899****96 PP

>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   3.0   2.2e-05      0.13      94     245 ..     146     312 ..      70     324 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.2e-05
                   --SEEEEEGGGGGGS-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHC...............TTTHHHHHHHHHHHHHHHH.HHHHHCCTTTT CS
  DHQ_synthase  94 qPkavlidlevLktLperelraGlaEviKyalikdeelfelleenaeallk...............eeeeealeeliarsievka.evveeDekekg 174
                   +P++v++d+++++  p+r l+aG+++++ + + + +   +  +++a  +++               ee e+a+ ++ ++ ++    +vve++ + +g
    CTQ27944.1 146 NPNMVIVDTQIIAGAPARLLAAGIGDALATWFEARACSRSGATTMAGGKCTqaalalaelcyntllEEGEKAMLAAEQHVVTPALeRVVEANTYLSG 242
                   6888999999999999999999988887665443333222222222211113445567766666542222222222223222222245555555444 PP

                   GGGG...GGTTHHHHHHHHHHHTTTTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT CS
  DHQ_synthase 175 lral...LnlGHtigHaiEallgyekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkel 245
                   +      L   H i   + a+ + +++ HGe Va+G ++++ l +    ++ +e+e++ +l++++glp++l +l
    CTQ27944.1 243 VGFEsggLAAAHAIHNGMTAIPDAHHYYHGEKVAFGTLTQLVLEN----APVDEIETVAALCHSVGLPITLAQL 312
                   32211224444555555555555599************9999884....456899**************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2732.78
//
Query:       CTQ27945.1  [L=220]
Description: fructose-6-phosphate aldolase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-46  157.7   0.0    1.6e-45  155.6   0.0    1.8  1  TAL_FSA   Transaldolase/Fructose-6-phosphate aldolase
  ------ inclusion threshold ------
       0.14   12.5   0.0       0.25   11.7   0.0    1.4  1  Nab2      Nuclear abundant poly(A) RNA-bind protein 2 (Nab2)


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.0   1.8e-49   1.6e-45       1     244 [.       3     206 ..       3     218 .. 0.95

  Alignments for each domain:
  == domain 1  score: 155.6 bits;  conditional E-value: 1.8e-49
                 EEEE---HHHHHHHHHTT---EEE--HHHHHH..TTS.-HHHHHHHHHHH........................H-S-EEEE-S-...-SHHHHHHHHH CS
     TAL_FSA   1 lvlDtadrelikklleekgiqgvTtNPsliekaikykalydeaieeikkegkkvkeaydkLavedilealdllgadgrvslEVdarlsddteatieeAr 99 
                 l+lDta+++++++l++  ++ gvTtNPs+i++   +k  + +++ +++k+                      +g +g + +++++   +d+++++eeA+
  CTQ27945.1   3 LYLDTANVAEVERLARIFPLAGVTTNPSIIAA---GKVPVWDVLPRLQKA----------------------VGPEGTLFAQTMS---RDAQGMVEEAK 73 
                 589*****************************...889**********99......................9************...*********** PP

                 HHHTT-T..TEEEEEESSHHHHHHHHHHHHTT--EEEEEE-SHHHHHHHHHHT-SEEEEBHHHHHTTT............S-HHHHHHHHHHHHHHHT- CS
     TAL_FSA 100 rlialyerenvlIKiPateeGikAikeLkkeGinvnvTliFsleqalaaaeagasviSpFvgRiddllkkleekdklkgkddgvalvkeiynyykklgy 198
                 rl +++    +++KiP+t eG++Aik LkkeGi +  T+++s+ q+l+aa aga++++p+v+R+d+++             dg+++v+e+  +++ ++ 
  CTQ27945.1  74 RLSNAVP--GIVVKIPVTAEGLAAIKLLKKEGIPTLGTAVYSASQGLLAALAGAKYVAPYVNRVDAQG------------GDGIRMVQELQSLLEMHAP 158
                 *******..***********************************************************............89***************99 PP

                 S-EEEEBS--SHHHHH..HHHT-SEEEE-HHHHHHHT--HHH...... CS
     TAL_FSA 199 sTkvmaasfrnveeve..elagcdtvTippkllealakhgktseklee 244
                 + kv+aasf+++++++   lagc+++T+p+++ +++  ++++++++e+
  CTQ27945.1 159 ESKVLAASFKTPRQALdcLLAGCEAITLPLDVAQQMLGTPAVESAIEK 206
                 ****************999*********************99544444 PP

>> Nab2  Nuclear abundant poly(A) RNA-bind protein 2 (Nab2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.8e-05      0.25      29      81 ..     126     180 ..     110     196 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.8e-05
        Nab2  29 nyvaeyivlllsnGgtvesvvqelstlfdsvs..kealadvvqtaffalealqqG 81 
                 +yva y+  + + Gg+   +vqel++l++  +  +++la   +t  +al+ l +G
  CTQ27945.1 126 KYVAPYVNRVDAQGGDGIRMVQELQSLLEMHApeSKVLAASFKTPRQALDCLLAG 180
                 8**************************9876511456778888888888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1835.70
//
Query:       CTQ27946.1  [L=328]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-22   78.9   0.1    4.8e-22   78.0   0.1    1.5  1  HTH_18    Helix-turn-helix domain
    1.1e-18   66.8   0.1    2.3e-13   49.9   0.0    2.4  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara
  ------ inclusion threshold ------
      0.013   15.0   0.1      0.026   14.0   0.1    1.5  1  Cupin_4   Cupin superfamily protein
        0.1   12.9   0.4       0.28   11.5   0.1    1.9  2  DUF4129   Domain of unknown function (DUF4129)


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.1   1.1e-25   4.8e-22       1      81 []     235     314 ..     235     314 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 1.1e-25
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrrr 81 
                 +a+a+ +s+ +L++lf++   + + eyl+++Rle+Ar lL + ++++v++iA+a+GF+d ++F r frk++  +Pseyrr+
  CTQ27946.1 235 VAQAFYLSPNYLSHLFQKCGPMGFNEYLNHIRLEQARMLL-KGHNMKVKDIAYACGFADSNYFCRLFRKTTERSPSEYRRQ 314
                 5899**********************************88.679***********************************96 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.3e-06     0.024       4      31 ..     225     252 ..     222     263 .. 0.89
   2 !   49.9   0.0     5e-17   2.3e-13       6      42 .]     276     313 ..     274     313 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.3e-06
                 CCSCT--HHHHHHHTTSSHHHHHHHHHH CS
    HTH_AraC   4 nlstnltiediAdelgfSrsyFsrlFkk 31 
                 +++++l+ e++A+++++S++y+s+lF+k
  CTQ27946.1 225 HYAEPLSRESVAQAFYLSPNYLSHLFQK 252
                 7888888899****************98 PP

  == domain 2  score: 49.9 bits;  conditional E-value: 5e-17
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                  +n++++diA ++gf +++yF+rlF+k+t  +Ps+yr+
  CTQ27946.1 276 GHNMKVKDIAYACGFaDSNYFCRLFRKTTERSPSEYRR 313
                 69**********************************96 PP

>> Cupin_4  Cupin superfamily protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   5.8e-06     0.026     180     288 ..     104     216 ..      97     248 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.8e-06
                 E-TT-EEEE-TT-EEEEEBBT-CCEEEEEECCEEHCCHHHCHHHHHHHHHHHH..........HHHCTSCHHCTCGTTTGGGTTS-HHHHHHHHHHHHH CS
     Cupin_4 180 LepGDlLYlPrgviHqgvaedesltlSvglraptaaellesvldllldklpei..........derlrdallravqargeidsdsidalaaqlsellrd 268
                 Le+ D+LY+P   + +++ ++++l lS+ +  ++ +  l+++   +++ + ++                  l +  ++ +++ +++++ +  + +ll++
  CTQ27946.1 104 LEAHDVLYIPGDSWNCPQWQAPCLLLSILFAKQQLECSLQHWNGKAITVVDKRqalrrgprvgS------FLLQALNELRMQPQEQQTARSIVVSLLSH 196
                 8999********************************************9999844444333321......11111222222233333333333344443 PP

                 HHHHHHCS-HHHHCCHHHHH CS
     Cupin_4 269 palleeflgqlltsssrekd 288
                   +l   + q  + s++  +
  CTQ27946.1 197 CHDLLGSQAQTSSRSQALFE 216
                 33333333333333322222 PP

>> DUF4129  Domain of unknown function (DUF4129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   6.3e-05      0.28       5      64 ..     169     238 ..     168     240 .. 0.81
   2 ?   -2.7   0.1       1.7   7.4e+03      18      28 ..     304     314 ..     299     323 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.3e-05
     DUF4129   5 llraLaergldrrpgeTprEyarrv...........riapspaaalaalaelfeearYGgrpasaeeyrrl 64 
                 ll+aL e    +++ +T+r ++  +           +++ s ++al ++ + + ++ Y  +p+s+e ++++
  CTQ27946.1 169 LLQALNELRMQPQEQQTARSIVVSLlshchdllgsqAQTSSRSQALFEAIRQYMDIHY-AEPLSRESVAQA 238
                 6899******************99987766434443333446669999**********.899999999886 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.7
     DUF4129  18 pgeTprEyarr 28 
                 + ++p+Ey r+
  CTQ27946.1 304 TERSPSEYRRQ 314
                 55788888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2512.01
//
Query:       CTQ27947.1  [L=216]
Description: conserved hypothetical protein; putative metal-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-84  282.9   2.7    1.2e-84  282.7   2.7    1.0  1  ZinT      ZinT (YodA) periplasmic lipocalin-like zinc-recruit


Domain annotation for each model (and alignments):
>> ZinT  ZinT (YodA) periplasmic lipocalin-like zinc-recruitment
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.7   2.7   6.7e-89   1.2e-84       2     181 .]      37     216 .]      36     216 .] 0.99

  Alignments for each domain:
  == domain 1  score: 282.7 bits;  conditional E-value: 6.7e-89
                 HHHHHTT---GGG-----GGGG-EEEEESHHHHHTTTTHHHHHHHHHH-TTS-HHHHHHHHHHHH--SEEEEEEETTEEEEEETTEEEEEE-EEEEEEE CS
        ZinT   2 ekkvaegvfedkevkdRelsdweGewqsvypylkdGtldevfekkakekkdktaeeykeyYekGYktdvdkikieddtieftkngkkkkaeYkydGyki 100
                 e++++eg+f dk+v+dR+lsdweG wqsv+pyl +G+ld+v+e+kak+ + k++eey++yY+kGY+tdv++i iedd ief+ +++ ++++Y+y+Gyki
  CTQ27947.1  37 ERQASEGIFADKDVQDRALSDWEGVWQSVNPYLLNGDLDPVLEQKAKKPGGKSVEEYRAYYKKGYATDVEQIGIEDDVIEFHVGQTVNSCKYRYSGYKI 135
                 57899********************************************************************************************** PP

                 EE-TTS-EEEEEEEE---TT--S-SEEEEESS--SS---SSEEEEEESS-HHHHHT--S---EEEETTS-HHHHHHHHHH- CS
        ZinT 101 ltyekGnrgvrylfeakdkesgapkyiqfsDheiapekaehfhiylgnesqealleelenwPtyypselsgeeiveemlah 181
                 l+y++G++gvrylfe+++ +++apk++qfsDh+i p+k++hfhi++gnesqeall+e++nwPtyyp+ l++e+iv+eml+h
  CTQ27947.1 136 LHYASGKKGVRYLFECQQGDAKAPKFVQFSDHIIGPRKSQHFHIFMGNESQEALLKEMDNWPTYYPYALHKEQIVDEMLHH 216
                 ********************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1666.24
//
Query:       CTQ27948.1  [L=883]
Description: phosphoenolpyruvate carboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.2e-294  976.7   0.0   1.1e-293  976.3   0.0    1.1  1  PEPcase    Phosphoenolpyruvate carboxylase
    9.8e-06   24.3   0.0    1.9e-05   23.4   0.0    1.4  1  PEPcase_2  Phosphoenolpyruvate carboxylase


Domain annotation for each model (and alignments):
>> PEPcase  Phosphoenolpyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  976.3   0.0  1.2e-297  1.1e-293       2     795 .]     129     883 .]     128     883 .] 0.98

  Alignments for each domain:
  == domain 1  score: 976.3 bits;  conditional E-value: 1.2e-297
                 --EEEEE---TT--SSS--HHHHHHHHHHHHHHT-SS--HHHHHHHHHHHHHHHHHHHH---B-SS---HHHHHHHHHHHHHHTHHHHHHHHHHHHHHH CS
     PEPcase   2 leielVlTAHPteivRrtilkkqrriaelleqldeaelteeereeleeqleeeiallwrtdelrqekptvldEvenglsyfeevlfeavPellreleea 100
                 l++elVlTAHPtei+Rrt+++k+ +++++l+qld+++  ++e+++l ++l++ ia+ w+tde+r+++p+++dE+++g++++e++l+e vP++lrel+e+
  CTQ27948.1 129 LSLELVLTAHPTEITRRTLIHKMVEVNNCLKQLDNKDIADYEHHQLMRRLRQLIAQSWHTDEIRKHRPSPVDEAKWGFAVVENSLWEGVPNYLRELNEQ 227
                 6899*********************************************************************************************** PP

                 HHHHTS.----T---EEEEE-TTTB-TT-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---....----HHHHHTT-SSS..............T CS
     PEPcase 101 lkesfpelelpaasflrfgsWiGgDRDGNpnVtaevtrevlllqrelalekylkeveeLieeLslslelvevseellesleedkekleevyeelaeryk 199
                 l+++++ + +    ++rf+sW+GgDRDGNpnVta++tr+vlll+r++a +++lk+v+ Li+eLs+    ve+++el++++ ++               +
  CTQ27948.1 228 LEANLGYQLPVDFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKATDLFLKDVQVLISELSM----VECTDELRALAGAEG--------------A 308
                 ******5555559****************************************************....***********9996..............5 PP

                 TSHHHHHHHHHHHHHHHHHHHHHHHHHT-.-----TT---SHHHHHHHHHHHHHHHHHTT-HHHHTTHHHHHHHHHHHTTTTSSEEEEEEEHHHHHHHH CS
     PEPcase 200 eepYRlklaelrkrLentrerleelaekeeeeleeeeayesaeelledLelikesLketgaklladgeledlirqvevfGlhLaklDiRqeserheeal 298
                 +epYR  +++lr++L +t+++le++ + + +  +++  ++++e+l+e+L+++++sL+++g+ ++a+gel d++r+v+ fG+ L+++DiRqes+rh+eal
  CTQ27948.1 309 QEPYRYLMKKLRSQLMETQAWLEARLKGQ-KLPKPAGLITQNEQLWEPLYACYKSLQACGMGIIANGELLDTLRRVKSFGVPLVRIDIRQESTRHTEAL 406
                 9***************************9.77999**************************************************************** PP

                 HHHHHHTTS.--GGGS-HHHHHHHHHHHHH-SS--S-TT----HHHHHHHHHHHHHHHS.-...TTSEEEEEEET--SHHHHHHHHHHHHHTT-..-.. CS
     PEPcase 299 aeileylglekdYaelseeervelLlreLeskrplipkelelseeteevldvlrviaelqeefgkeiietyviSmaeeasdvLevllLakeaglldkae 397
                  e+++ylg+ +dY+++se++++++L+reL+skrpl+p+++e seet+evld+++viae+     + +i +yviSma+++sdvL+v+lL keag+     
  CTQ27948.1 407 GEMTRYLGI-GDYESWSEADKQAFLIRELNSKRPLLPRQWEPSEETREVLDTCKVIAEAP----RGSIAAYVISMAKTPSDVLAVHLLLKEAGI----- 495
                 *********.*************************************************3....699***************************..... PP

                 ..S---EEEEE-SHHHHHHHHHHHHHHHHSHHHHHHTTT...EEEEEE-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEE-SSTGGGS-HH CS
     PEPcase 398 gaaelrvvPLfEtvedLknapevleellslplyrelvkksgelqevMlGYSDSnKdaGfltsnWelykaqealvkvaeeagvklrlFHGrGGsvgRGGg 496
                    +l v+PLfEt++dL+na++v+++ll++++yr  +++   +q+vM+GYSDS+KdaG+++++W++y+aq+al k++e+ag++l+lFHGrGGs+gRGG+
  CTQ27948.1 496 -GFALPVAPLFETLDDLNNANDVMTQLLNIDWYRGFIQG---KQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGA 590
                 .3569**********************************...********************************************************* PP

                 HHHHHHHTS-TTTTTT-EEEEE-GGGHHHHHSSHHHHHHHHHHHHHHHHHHHHS------.HHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHS-H CS
     PEPcase 497 payeailaqPpgtvngrikiTeQGEviaskyslpelalrnLelvtaavleaslleeaeekkeeweeimeelsevsreaYrklvyeepdfveyFreaTPi 595
                 pa++a+l+qPpg+++g +++TeQGE+i++ky+lpe+++++L+l+t+a+lea+ll+++e+k +ew++im+els+vs++ Yr  v+e++dfv+yFr+aTP+
  CTQ27948.1 591 PAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTISSLSLYTSAILEANLLPPPEPK-AEWRDIMAELSDVSCKMYRGYVRENKDFVPYFRSATPE 688
                 ************************************************************.************************************** PP

                 HHHHHSS-SSS---------GGSS-HHHHHHHHHHTT--GGGTTTHHHHHHHH..HTTTTHHHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHH CS
     PEPcase 596 eeiskLnigSRPakRkkkkglesLRAIPWvFsWtqsRlllpaWyGvgtalkevlekeeeklelLremykkwpffrtliskvemvlaKadleiakeYvql 694
                 +e++kL++gSRPakR+++ g+esLRAIPW+F+Wtq+Rl+lpaW+G+g+al++v   e +k + L++m+++wpff+t + ++emv++Kadl++a++Y+q+
  CTQ27948.1 689 QELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGAALQKV--VEGGKQSELEAMCRDWPFFSTRLGMLEMVYSKADLWLAEYYDQR 785
                 ****************************************************9..7778899************************************* PP

                 HS-GG.GHHHHHHHHHHHHHHHHHHHHHHT-SSTTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..TT----HHHHHHHHHHHHHHHHHH-- CS
     PEPcase 695 lvdkelrerlfeeireelertvelvleitgqkelldknpvlqrsvelRnayidPlnllQvelLkrlRqaeeekseeeeeellrdallltinGiaaGlrn 793
                 lv++e +++l++e+r+ l+ ++++vl+i+++++l+++ p++++s++lRn y+dPln+lQ+elL+r Rqaee  + ++ ++++++al++ti+G+aaG+rn
  CTQ27948.1 786 LVKPE-LWALGSELRKLLAADINVVLAIANDSHLMADLPWIAESIQLRNIYTDPLNVLQAELLHRSRQAEE--EGKDPDPRVEQALMVTIAGVAAGMRN 881
                 *****.788*************************************************************9..699*********************** PP

                 -- CS
     PEPcase 794 tG 795
                 tG
  CTQ27948.1 882 TG 883
                 *9 PP

>> PEPcase_2  Phosphoenolpyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   2.1e-09   1.9e-05     172     375 ..     500     717 ..     482     757 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.1e-09
                 EEEEEE-SHHHHHTHHHHHHHHH.....HHT--SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-BSSGGGT---TTG..HH CS
   PEPcase_2 172 evIPLiEdkesllnideiveeyv.....kekklkelRvflarSDpAlnyGlisavllvkvAlselykleeelgvkiyPilGvGslpfRGhlspen..ve 263
                  v PL+E+ + l n+++++++++     +   + ++ v+++ SD+A + G+++a+ +   A + l+k  e+ g+++    G G +  RG+   +   ++
  CTQ27948.1 500 PVAPLFETLDDLNNANDVMTQLLnidwyRGFIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAalLS 598
                 689*******************977554555999999**********************************************9999999654431156 PP

                 HHHHHTTT-SEEEE-HH...HHHTTHHHHHHH...HHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---S-B----- CS
   PEPcase_2 264 evleeYagvkTfTvQSa...fkYdyeeeevke...airkineaevkkprelseeeeelllevieklseaYqekiekladvinevaklipkrRaRklhig 356
                 +     +g   +T Q     fkY  +e ++ +     ++i ea+   p e + e ++++ e+ +  ++ Y+  +++  d++ ++ ++ p++   kl  g
  CTQ27948.1 599 QPPGSLKGGLRVTEQGEmirFKYGLPEVTISSlslYTSAILEANLLPPPEPKAEWRDIMAELSDVSCKMYRGYVRENKDFVPYFRSATPEQELGKLPLG 697
                 777788888889999743224555444433331113567788888888899999999999999999999999999999999888888888777777666 PP

                 -.----EEE--HE---HHHH CS
   PEPcase_2 357 l.fgYsReieevelPRAIsf 375
                       R +++ve  RAI +
  CTQ27948.1 698 SrPAKRRPTGGVESLRAIPW 717
                 63333444566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 6546.31
//
Query:       CTQ27949.1  [L=383]
Description: acetylornithine deacetylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-32  112.9   0.0    2.1e-32  112.5   0.0    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    4.8e-24   84.4   0.0    7.5e-24   83.8   0.0    1.3  1  M20_dimer      Peptidase dimerisation domain
     0.0011   18.7   0.0     0.0018   18.0   0.0    1.3  1  Peptidase_M28  Peptidase family M28
  ------ inclusion threshold ------
      0.023   15.5   0.0      0.096   13.4   0.0    2.0  2  TetR_C_33      Tetracyclin repressor-like, C-terminal domain
      0.056   12.5   0.0      0.092   11.8   0.0    1.3  1  Peptidase_M42  M42 glutamyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5   0.0   5.9e-36   2.1e-32       1     205 [.      76     377 ..      76     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 5.9e-36
                    EEEEES-BSS.TTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHHTTTCESEE CS
                    xxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVp.eeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegleerekvdav 94 
                    ll++H+D+Vp ++    wt+ pf+lte+d+klyG G++dmkg  + +l alr ++ + +  k+++ +l+++dEE++++Ga++++e    r ++d+ 
     CTQ27949.1  76 LLAGHTDTVPfDDGR--WTRdPFTLTEHDNKLYGLGTADMKGFFAFILDALRDVDVTTL--KKPLYILATADEETSMAGARYFAET--TRLRPDC- 164
                    699*******77777..************************************999985..77***********999********3..3789999. PP

                    EEEEEESSSBTCHSTETEEEE........................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxx........................................................................... RF
  Peptidase_M20  95 felhieepgileagklaigvv........................................................................... 115
                      ++i+ep+ l+     i+                                                                             
     CTQ27949.1 165 --AIIGEPTSLQ----PIRAHkghmsnairiqgqsghssdpargvnaielmhdaigrimqlrdllkeryhfeaftvpyptlnlgaihggdasnric 254
                    ..66********....33333778999999****************************************************************** PP

                    .....................................EEEEEEE.EEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHHTTT.EE CS
                    .....................................xxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
  Peptidase_M20 116 .....................................kvevell.eggapvtln.dsplvkalaeaaeelfgekvelivsgpggtdarffagi.pt 171
                                                         + +v++l    + ++++ d++lv+++++ + +      ++ v   ++t+a+f++ + pt
     CTQ27949.1 255 accelhmdirplpgmtlndlngllgealapvserwpgRLTVSELhPPIPGYECPpDHKLVQVVEKLLGA------QTDVVN-YCTEAPFIQTLcPT 343
                    ************************************966666556999999***************655......455889.********999888 PP

                    EEEEESSG.GCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 172 vmifgpgs.glaHspnEyvdledlekgikvlarll 205
                    + ++gpgs  +aH+p+Ey++ + ++   +++ +++
     CTQ27949.1 344 L-VLGPGSiNQAHQPDEYLETRFIKPTRELISQVV 377
                    8.6****88**********9988888777776665 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   2.1e-27   7.5e-24       2     106 ..     178     287 ..     177     290 .. 0.92

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 2.1e-27
                 EB-EEEEEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC..........TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHH CS
   M20_dimer   2 ghkGlaggkitvkgkagHsgapgagaNAieklarllaeledeegdia.....eerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevle 95 
                 +hkG+++  i+++g++gHs+ p +g+NAie++ +++ ++ ++++  +     e +++p++tln++ i+gG+a+n i++++e+++diR+lpg+++ ++  
  CTQ27949.1 178 AHKGHMSNAIRIQGQSGHSSDPARGVNAIELMHDAIGRIMQLRDLLKeryhfEAFTVPYPTLNLGAIHGGDASNRICACCELHMDIRPLPGMTLNDLNG 276
                 8*****************************999999999999666669999999******************************************999 PP

                 HHHHHHTSCCS CS
   M20_dimer  96 eieeilekeap 106
                  + e+l+ + +
  CTQ27949.1 277 LLGEALAPVSE 287
                 99888887766 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     5e-07    0.0018      13      85 ..      73     157 ..      63     178 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 5e-07
                    EEEEEEEE--B-TTT.............TCC...T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHHHHH CS
  Peptidase_M28  13 evlllgAHyDsvgvg.............rgp...ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafakak 85 
                      lll++H D+v+++             + +      G  D     a++L  +r +    +++k+ + +l++  EE ++ G+++fa+ +
     CTQ27949.1  73 GGLLLAGHTDTVPFDdgrwtrdpftlteH-DnklYGLGTADMKGFFAFILDALRDVDV--TTLKKPLYILATADEETSMAGARYFAE-T 157
                    6799**********999999888888751.2456778999999999********9996..689***********************5.3 PP

>> TetR_C_33  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.7e-05     0.096      19      92 ..      12      87 ..      10      94 .. 0.80
   2 ?   -3.6   0.0         5   1.8e+04      26      51 ..     301     328 ..     294     336 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.7e-05
                HHHCCSS--TT-S-H.GHHCCCCHHHHHHHHHHHGGG---TH.....--CCHHHHHHHHHHHHHHHHHHHHCTTTTS.SS- CS
   TetR_C_33 19 Yallfgspvpgyaap.delaaagarvlalllaalaalvaagl.....ppadavaaaralwaalhGlvsLelfghfgl.pad 92
                Y++l+++p    +a+ ++l ++++ +++ll++ +++l   g      p +d+++   +l ++ hG+  L l+gh ++ p d
  CTQ27949.1 12 YRALIATPSI--SATeEALDQSNESLINLLAGWFRDL---GFnveiqPVPDTRHKFNLLASTGHGAGGLLLAGHTDTvPFD 87
                9999966664..4432599999999999999999999...66777767888***********************9654544 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5
                 --TT-S-H.G.HHCCCCHHHHHHHHHHH CS
   TetR_C_33  26 pvpgyaap.d.elaaagarvlalllaal 51 
                 p+pgy+ p d +l++  +++l++ ++++
  CTQ27949.1 301 PIPGYECPpDhKLVQVVEKLLGAQTDVV 328
                 5667766542366666666655555555 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.6e-05     0.092     140     186 ..     118     166 ..      95     191 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.6e-05
                    HHHHHHHHHHCTSS-SSEEEEEEESTCTTTSHHHHHHHHH..H--SEEE CS
  Peptidase_M42 140 avllellkelkeeeleatvylvatvqEEvGlrGaktsaek..ikpdiai 186
                    a +l++l+ +  + l+  +y++at  EE  + Ga+++ae+  ++pd+ai
     CTQ27949.1 118 AFILDALRDVDVTTLKKPLYILATADEETSMAGARYFAETtrLRPDCAI 166
                    789999******************************9986115677766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2933.54
//
Query:       CTQ27950.1  [L=334]
Description: N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-33  115.3   0.0    4.2e-33  114.3   0.0    1.5  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
      9e-17   61.7   0.0    1.4e-16   61.2   0.0    1.3  1  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
    0.00073   19.6   0.0     0.0015   18.7   0.0    1.5  1  DapB_N           Dihydrodipicolinate reductase, N-terminus
  ------ inclusion threshold ------
      0.011   15.6   0.0       0.02   14.8   0.0    1.3  1  DUF4459          Domain of unknown function (DUF4459)
      0.015   16.1   0.0      0.043   14.7   0.0    1.8  2  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
      0.016   14.7   0.0      0.025   14.1   0.0    1.3  1  Epimerase        NAD dependent epimerase/dehydratase family
        0.1   12.2   0.0       0.15   11.6   0.0    1.3  1  NmrA             NmrA-like family


Domain annotation for each model (and alignments):
>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.0   1.7e-36   4.2e-33       3     121 .]       5     146 ..       3     146 .. 0.97

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 1.7e-36
                     EEETTTSHHHHHHHHHHHCTSSEEEEEEEESTT..TTTSBHHHHSGGGTTTECEBEEE.GGGGGC.TT-SEEEE-SCHHHHHHHHHHHHHTTSEE CS
  Semialdhyde_dh   3 aivGatGyvGqellrlLeehpevelvvllsssr..saGkklaeavkaleegkdlkved.vdeeel.kevdivflalpagvskelapklaeagvkv 93 
                      ivGa+Gy G+el++++++hp++++++l+ s++  +aGk +++++++l+++ d+++++  d+ e+ ++vd+vfla+ ++vs++lap++++ag++v
      CTQ27950.1   5 LIVGASGYAGAELVTYINRHPHMNITALTVSAQsnDAGKLISDLHPQLKGIFDMPLQPmSDISEFsAGVDVVFLATAHEVSHDLAPQFLAAGCVV 99 
                     69*************************999988779**********************999999999**************************** PP

                     EESSSTTTTST...................TSEBE-HHHHGGGGGGH CS
  Semialdhyde_dh  94 iDlssdfRlkd...................davyvlpevnreaikka 121
                     +Dls++fR++d                   +avy+l+e+ ++a+k+a
      CTQ27950.1 100 FDLSGAFRVNDgafyekyygfthrhpdllkQAVYGLAEWSADALKDA 146
                     *******************************************9975 PP

>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   5.3e-20   1.4e-16       1     184 []     163     311 ..     163     311 .. 0.95

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 5.3e-20
                      HHHHHHC.TT.E.EEEEEEEEEEGGGCHHHHHHHHHHHHHHHHHSTTS.CTTTSSHHTTSEESTCSTBTTTTCHCBHHHHHHHHHHHHHCTESC CS
  Semialdhyde_dhC   1 LkPLlda.lgel.ervivatyqavSGaGkkgvreLlkqvaelqrsdeakpgvfgvpiagNlipyidkeedkgepetreelkavaetkkilefte 92 
                      LkPL++a l++l ++ +++++++vSGaG+k                   +++ ++ ++ +l py     ++++pe++ +l+a    + +l++++
       CTQ27950.1 163 LKPLIEAnLLDLnQWPVINATSGVSGAGRK-------------------AAIGNSFCEVSLQPYGIF-NHRHQPEIASHLGAKVIFTPHLGNFK 236
                      8******9777769***************7...................99**************99.9************************* PP

                      SEEEEEEEESBSSEEEEEEEEEES..SSHHHHHHHHHHHHCSTTEEEEESSHCHHSSHHHHTTCSSSEEEEEEEEETTCTTEEEEEEEEETTTT CS
  Semialdhyde_dhC  93 kvsatcvrVPvlrGhseavtiklk..lkdveveeveellaaapevkvvvneeedrPtpaavaggtnsvsVGRirkdemgdeglklvvvgDNllk 184
                                  rG++e++t++lk  +  +++++v+++ +a+ ++ v+  + + +P ++ v g   ++++G + ++   d+ l +v+++DNllk
       CTQ27950.1 237 ------------RGILETITCRLKpgVGHAQIAAVYQQAYAD-KPLVRLYD-KGVPALKSVEG-LPFCDIG-FAVQD--DH-LIVVAAEDNLLK 311
                      ............**************99**************.99999998.9*********9.8******.88777..44.9*********97 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.7e-07    0.0015       4      90 ..       5      95 ..       2      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5.7e-07
                EEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHH....HHSSSS--S-BEBSSHHHHHHH-SEEEE-S-HHHHHHHHHHHHHT CS
      DapB_N  4 avvGasGrmGkevvkaveeaedlelvaavdrkeselegkdag....ellglgklgvavtddleevlekadvliDFTtpeavlenlklalek 90
                ++vGasG  G e+v  ++++++++++a   + +s+  gk ++    +l g++ + ++  +d++e+ + +dv+   T++e++ +++   l++
  CTQ27950.1  5 LIVGASGYAGAELVTYINRHPHMNITALTVSAQSNDAGKLISdlhpQLKGIFDMPLQPMSDISEFSAGVDVVFLATAHEVSHDLAPQFLAA 95
                79***************************999976666666666666677777777777**************9**999999888766655 PP

>> DUF4459  Domain of unknown function (DUF4459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   7.9e-06      0.02      68     119 ..     257     306 ..     252     312 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.9e-06
     DUF4459  68 adewlrfyaelpdvrkwqrvvpddfstmsgapwcdiqffeqendhsvitgse 119
                 a  + + ya+ p vr +++ vp  +  + g p+cdi f  q+ dh ++  +e
  CTQ27950.1 257 AAVYQQAYADKPLVRLYDKGVPA-LKSVEGLPFCDIGFAVQD-DHLIVVAAE 306
                 5567789***************7.56689********99886.666666555 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.7e-05     0.043       2      90 ..       3     100 ..       2     101 .. 0.76
   2 ?   -3.2   0.0       5.8   1.5e+04      36      59 ..     140     163 ..     115     170 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.7e-05
                   EEEEETT.SHHHHHHHHHHHHTTTTEEEEEE.ECSSHHHHHHH........HHHTTHE..EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT CS
  GFO_IDH_MocA   2 rvaiiGa.Gkigskhlrplnesqrleevval.ldpdaeraeav........aesfgve..aysdleelladpeidavivatpngtheelakaaleag 86 
                   + +i+Ga G++g + +  +n++ ++ +++al ++ +++ a ++           f+++   +sd++e +a   +d+v+ at  +  ++la ++l+ag
    CTQ27950.1   3 NTLIVGAsGYAGAELVTYINRH-PHMNITALtVSAQSNDAGKLisdlhpqlKGIFDMPlqPMSDISEFSA--GVDVVFLATAHEVSHDLAPQFLAAG 96 
                   789****999999999888888.77766666255666666666676664333333333667777888888..9************************ PP

                   -EEE CS
  GFO_IDH_MocA  87 khvl 90 
                   + v+
    CTQ27950.1  97 CVVF 100
                   9987 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.8
                   HHHHHHHHHHTTHE.EESSHHHHHT CS
  GFO_IDH_MocA  36 aeraeavaesfgve.aysdleella 59 
                   a + ++ a+   v+ +y   ++l+ 
    CTQ27950.1 140 ADALKD-AQLIAVPgCYPTAAQLSL 163
                   222222.344455555555555555 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   9.6e-06     0.025       2      76 ..       5      86 ..       4      92 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 9.6e-06
                EEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHHT-SEEEE-.-S.--- CS
   Epimerase  2 lVtGatGfiGsalvkallekgye.vigldrlssasntarledl......elveldltdrsalerlfkeeqpdavihl.Aa.vgg 76
                l++Ga+G+ G+ lv +++++ +  +++l+   +++  ++l          + ++ l   s++ ++ +  ++d+v+++ A  v++
  CTQ27950.1  5 LIVGASGYAGAELVTYINRHPHMnITALTVSAQSNDAGKLISDlhpqlkGIFDMPLQPMSDISEFSA--GVDVVFLAtAHeVSH 86
                89*******************8779999988666655544433699999899999999999999999..999999994445555 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.9e-05      0.15       2      75 ..       5      83 ..       4      98 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.9e-05
                EESSTTSHHHHHHHHHHHH.HT-EEEEEES-S....-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG CS
        NmrA  2 lviGaTGrqGksvvrallk.aghkvralvRdt....kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy 75
                l++Ga+G+ G+ +v ++ +    ++ al+        ++l+  l  +   +    l+  + ++e   gvdvvf++t+  
  CTQ27950.1  5 LIVGASGYAGAELVTYINRhPHMNITALTVSAqsndAGKLISDLHPQLKGIFDMPLQPMSDISEFSAGVDVVFLATAHE 83
                79***************994455799**999944444555555566666666778899****************99844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2714.24
//
Query:       CTQ27951.1  [L=258]
Description: acetylglutamate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-40  138.5   2.7      3e-40  138.3   2.7    1.0  1  AA_kinase  Amino acid kinase family
  ------ inclusion threshold ------
       0.02   15.3   0.1       0.26   11.7   0.0    2.5  3  Smr        Smr domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   2.7   3.4e-44     3e-40       3     240 ..       5     235 ..       3     236 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 3.4e-44
                 EEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHT.TEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHGE CS
   AA_kinase   3 vVvKlGGssltdkeeaslrrlaeqiaalkesg.nklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglpa 100
                 +++KlGG +l+++e+  l+rl++ + +++e++ ++l++VhGgg ++d+l+++  +l+ ++++ glr+t +e+ +++t +++++ ++ l+a   ++g+++
  CTQ27951.1   5 LIIKLGGVLLDSEEA--LERLFTALVNYREAHqRPLIIVHGGGCVVDELMKQ-LNLPVQKKN-GLRVTPAEQIDIITGALAGTANKTLLAWAKKHGISS 99 
                 79*************..***********7777799*****************.*********.************************************ PP

                 EEE-GGGTCEECCCE.....HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTT CS
   AA_kinase 101 vglsaaaldateagr...degsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpda 196
                 vgl   + d+++  +   + g++g     + + i++ll+ g++pv++ + g+++eg+l ++++D++a++lA+ lgA  li+l+dV+G++d  +      
  CTQ27951.1 100 VGLFLGDGDSVKVTQldaELGHVGLAQPGSPALINTLLAGGYLPVVSSI-GVTDEGQLMNVNADQAATALAATLGA-DLILLSDVSGILDGKG------ 190
                 *************9999999****************************6.6999**********************.89999*******9976...... PP

                 CECCEEEHHHCHH.CSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 197 rllpeisvdeaee.saselatgGmkvkhpaalaaarrggipvvIt 240
                 +++ e+++++ae+ ++++ +t Gm+vk+ aal+aar  g pv I+
  CTQ27951.1 191 QRIAEMTAEKAEQlIEQGIITDGMIVKVNAALDAARALGRPVDIA 235
                 9************************************88999886 PP

>> Smr  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.9e-05      0.26       6      38 ..      14      46 ..      12      72 .. 0.89
   2 ?    0.4   0.0     0.092   8.3e+02      14      45 ..      84     115 ..      47     133 .. 0.76
   3 ?   -1.9   0.0       0.5   4.5e+03      45      64 ..     178     198 ..     162     209 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.9e-05
                --HHHHHHHHHHHHHHHHHTT-SEEEEE--STT CS
         Smr  6 lrraealnvletfldaasakglrsvevihGkGa 38
                l  +eal++l t l + ++++ r + ++hG G 
  CTQ27951.1 14 LDSEEALERLFTALVNYREAHQRPLIIVHGGGC 46
                6789**************************985 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.092
                 HHHHHHHHHHHTT-SEEEEE--STTSTTHCHH CS
         Smr  14 vletfldaasakglrsvevihGkGahagvgvL 45 
                 + +t l+ a ++g++sv    G G++ +v  L
  CTQ27951.1  84 ANKTLLAWAKKHGISSVGLFLGDGDSVKVTQL 115
                 44566666888888888888888886655555 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.5
                 HHHHHHHHHHCS.TTEEEEEE CS
         Smr  45 LrpavmgwLagk.eaveafre 64 
                 L + v g L+gk +++++++ 
  CTQ27951.1 178 LLSDVSGILDGKgQRIAEMTA 198
                 556666666666544444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1922.06
//
Query:       CTQ27952.1  [L=457]
Description: argininosuccinate lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-100  335.6   0.0   6.8e-100  334.5   0.0    1.6  2  Lyase_1   Lyase
    1.5e-25   89.8   0.2    4.6e-25   88.2   0.0    2.0  2  ASL_C2    Argininosuccinate lyase C-terminal
  ------ inclusion threshold ------
      0.025   13.1   3.1      0.045   12.3   3.1    1.3  1  FUSC      Fusaric acid resistance protein family
      0.093   13.3   0.6       0.62   10.7   0.0    2.6  2  ADSL_C    Adenylosuccinate lyase C-terminus
       0.38   10.9   3.5        1.7    8.8   0.5    2.8  4  K-box     K-box region


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.5   0.0  1.9e-103  6.8e-100       1     312 []       6     301 ..       6     301 .. 0.99
   2 ?   -3.8   0.0       1.8   6.5e+03     174     213 ..     316     354 ..     315     362 .. 0.77

  Alignments for each domain:
  == domain 1  score: 334.5 bits;  conditional E-value: 1.9e-103
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSS CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekv 99 
                 grft++ad+ +++f++++r+++rl e+di +++a++ka+ +++v+ + e+++ ++al+ +lee+++++q++l+++ e+++++v+ +l + +g       
  CTQ27952.1   6 GRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLSAAEQQQLEEALNVLLEEVRANPQQILASDAEDIHSWVEGKLIDKVG------- 97 
                 89******************************************************************************************....... PP

                 GIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEET CS
     Lyase_1 100 epndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvell 198
                 +  +k+htg+S+nDqv+T+l+l++k+++ e Ll+a +qL++al+e+a++++d v++G+Thlq+A+Pvt+++++ ay+e+l rd++rl+++lkrl v++l
  CTQ27952.1  98 QLGKKLHTGRSRNDQVATDLKLWCKDTVVE-LLSANRQLQSALVETAQQNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPL 195
                 9***************************66.******************************************************************** PP

                 TTTTTTSSTTTSCCTHHHHHHHHHHHHHCSTEESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEBT CS
     Lyase_1 199 gggtavgtglnadpefaelvakelakvtglpvkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvNP 297
                 g+g+++gt++++d+e   ++a +l+ +++    ++ns+++vsdrD+v+ell+ +++ +++Ls+faeDl++++sgea++vels++ ++ GSS+MP+K+NP
  CTQ27952.1 196 GCGALAGTAYEIDRE---QLAGWLG-FAS---ATRNSLDSVSDRDHVLELLSDAAIGMVHLSRFAEDLIFFNSGEANFVELSDRVTS-GSSLMPQKKNP 286
                 ***************...*******.999...9******************************************************.*********** PP

                 HHHHHHHHHHHHHHH CS
     Lyase_1 298 vqlElltgvagrvvG 312
                 ++lEl++g++grv+G
  CTQ27952.1 287 DALELIRGKCGRVQG 301
                 *************98 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHHHHHHHHTCEETTTTTTTSSTTTSCCT CS
     Lyase_1 174 ayaealerdrerlkellkrllvellgggtavgtglnadpe 213
                 ay++ +++d+e l ++l  + +  l  +++v  g++++++
  CTQ27952.1 316 AYNKDMQEDKEGLFDAL-DTWLDCLHMAALVLDGIQVKRP 354
                 68888999999999999.6667777777999999999886 PP

>> ASL_C2  Argininosuccinate lyase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.6   1.3e+04      37      45 ..      59      67 ..      34      87 .. 0.51
   2 !   88.2   0.0   1.3e-28   4.6e-25       1      68 [.     364     431 ..     364     432 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.6
                --GGG--HH CS
      ASL_C2 37 keleeltle 45
                 e+ ++ le
  CTQ27952.1 59 EEALNVLLE 67
                112233333 PP

  == domain 2  score: 88.2 bits;  conditional E-value: 1.3e-28
                 STTHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHTT--GGG--HHHHHHH-TT--GGGGGGSSHHHHT CS
      ASL_C2   1 FstATdlADyLvrkGlpFReAHeivgravrlaeekgkeleeltleelkeisplleedveeaLdpeasV 68 
                 +++AT+lADyLv+kG+pFReAH+ivg+av +a+++gk+le+ltl++l+++sp++ +dv+ +L++++++
  CTQ27952.1 364 YANATELADYLVAKGVPFREAHHIVGEAVVEAIAQGKPLEALTLADLQKFSPVIADDVYPILSLQSCL 431
                 78**************************************************************9997 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.1   1.3e-05     0.045     498     643 ..      55     190 ..      43     196 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.3e-05
        FUSC 498 pvsaewlarrllralrrdlaraasrpaaeaesrfesrmldrlaqllprlaaapparrellrdglaalrlgravlrLrralera...laaearaaldavl 593
                 + + e + + ll+  r+  +++++ +a++ +s++e+ ++d+++ql  +l +  ++++++++d    l + + v++L  a +++   l + a++ +dav+
  CTQ27952.1  55 QQQLEEALNVLLEEVRANPQQILASDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDL--KLWCKDTVVELLSANRQLqsaLVETAQQNQDAVM 151
                 5566778899999999999******************************95555555554443..4555566666655555533337777788888888 PP

        FUSC 594 aalafrapaaarsarrlrapaaalraldaalaalaaseatsalrralaaL 643
                  ++          + ++++p   +++  a++++la++e++ +  +al  L
  CTQ27952.1 152 PGYT---------HLQRAQPVTFAHWCLAYVEMLARDESRLQ--DALKRL 190
                 8888.........4444599***************9999877..444444 PP

>> ADSL_C  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.61   2.2e+03      32      50 ..      52      81 ..      41      88 .. 0.61
   2 ?   10.7   0.0   0.00017      0.62       6      43 ..     368     409 ..     363     448 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.61
                HHHC.........HHHHHHT-HHHH.C.HH CS
      ADSL_C 32 awee.........llelLaadpevk.k.se 50
                a+e+         lle ++a+p+   + ++
  CTQ27952.1 52 AAEQqqleealnvLLEEVRANPQQIlAsDA 81
                444445556777788888888764423444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00017
                 HHHHHHHH.HTH-HHHHHHHHHHHHHHHHHC...HHHHHHT- CS
      ADSL_C   6 ervllaLv.kglgReeAyelVqeaamkawee...llelLaad 43 
                   +   Lv kg+   eA+++V ea  +a ++   l +l +ad
  CTQ27952.1 368 TELADYLVaKGVPFREAHHIVGEAVVEAIAQgkpLEALTLAD 409
                 5667789988***********************965555555 PP

>> K-box  K-box region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.5   0.00048       1.7      40      76 ..      50      86 ..      46     104 .. 0.80
   2 ?    2.2   0.0     0.058   2.1e+02      51      91 ..      98     138 ..      96     140 .. 0.92
   3 ?   -3.0   0.0       2.3   8.4e+03      71      88 ..     173     190 ..     167     191 .. 0.74
   4 ?   -3.8   0.0       4.4   1.6e+04      34      47 ..     399     412 ..     398     413 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00048
       K-box 40 lslkeLqqLEqqLekslkkiRsrKeqllleeieelkk 76
                ls  e qqLE+ L+  l+++R+  +q+l+   e+++ 
  CTQ27952.1 50 LSAAEQQQLEEALNVLLEEVRANPQQILASDAEDIHS 86
                788999**********************999988765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.058
       K-box  51 qLekslkkiRsrKeqllleeieelkkkekqleeenkeLrek 91 
                 qL k l++ Rsr +q+ ++    +k    +l  +n++L+  
  CTQ27952.1  98 QLGKKLHTGRSRNDQVATDLKLWCKDTVVELLSANRQLQSA 138
                 8999999************9999**************9975 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.3
       K-box  71 ieelkkkekqleeenkeL 88 
                 +e+l + e++l+++ k+L
  CTQ27952.1 173 VEMLARDESRLQDALKRL 190
                 678888888888877766 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 4.4
       K-box  34 GedleslslkeLqq 47 
                 G+ le l+l +Lq+
  CTQ27952.1 399 GKPLEALTLADLQK 412
                 77899999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 3667.83
//
Query:       CTQ27953.1  [L=305]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-55  185.4   0.3    1.2e-54  184.9   0.3    1.2  1  LysR_substrate  LysR substrate binding domain
    4.1e-21   74.7   0.6    9.1e-21   73.6   0.2    1.8  2  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0076   16.0   0.1       0.02   14.7   0.1    1.7  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.9   0.3   1.9e-58   1.2e-54       4     206 ..      89     291 ..      86     294 .. 0.98

  Alignments for each domain:
  == domain 1  score: 184.9 bits;  conditional E-value: 1.9e-58
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsl 98 
                      +g L+ig +pt+++yllp++++ +++ +P++e+ l+e+++++ll++l++g+lD+ai+a+  e++ ++ +pL++ep++l++ +dhp+a++++v++
      CTQ27953.1  89 MSGPLHIGLIPTIGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCAILALVKESEAFIEVPLFDEPMMLAIYEDHPWANRDRVPM 183
                     68********************************************************************************************* PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrel 193
                     +dLa+e+l++le+g++lrd++  ++ eag + +  ++++sle+l+++vaaG Gi+llp++av +e +++++v+lp+  p+++r+++lvyr+g++l
      CTQ27953.1 184 SDLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPQERKRDGVVYLPCIKPEPRRTIGLVYRPGSPL 278
                     *********************************************************************************************** PP

                     HHHHHHHHHHHHH CS
  LysR_substrate 194 spavrafidflre 206
                     +++ +++++++r 
      CTQ27953.1 279 RSRYEHLAEAIRG 291
                     *********9986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.2   1.5e-24   9.1e-21       1      59 [.       3      61 ..       3      62 .. 0.98
   2 ?   -2.2   0.0      0.72   4.3e+03      32      47 ..     147     162 ..     144     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1.5e-24
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                +r+l+++va+ae+++f+rAA+ +++sqp++s qi++LE+elgv L+eRt+r++  T+aG
  CTQ27953.1  3 IRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLERTSRKVLFTQAG 61
                699*******************************************************9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.72
                 HHHHHHHHHHTS-SEE CS
       HTH_1  32 rqikrLEeelgvpLfe 47 
                 + +k+ E+ ++vpLf+
  CTQ27953.1 147 ALVKESEAFIEVPLFD 162
                 56888899999***97 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   3.4e-06      0.02       9      47 ..      12      50 ..       6      59 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.4e-06
                HHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSH CS
      HTH_30  9 lenggnisatAkaLhvHrnTlryRLrrieellgldlddp 47
                l++++  +++A++ hv+  Tl+  +r++e+ lg+ l + 
  CTQ27953.1 12 LAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLER 50
                5666999**************************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2501.74
//
Query:       CTQ27954.1  [L=466]
Description: pyridine nucleotide transhydrogenase, soluble [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-58  196.1   0.0    9.4e-58  195.7   0.0    1.1  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    4.7e-30  104.1   0.8    4.7e-30  104.1   0.8    1.7  2  Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase,
    6.8e-18   65.0   3.0    5.3e-16   58.9   0.0    2.5  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    6.6e-08   32.2   0.2     0.0012   18.2   0.0    2.3  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    2.4e-06   27.2   0.0    3.9e-06   26.5   0.0    1.4  1  FAD_oxidored   FAD dependent oxidoreductase
    6.3e-06   26.3   1.1    0.00014   22.0   0.2    2.6  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    1.5e-05   24.3   2.9    0.00019   20.6   2.2    2.3  2  FAD_binding_2  FAD binding domain
    0.00013   21.3   0.9    0.00034   19.9   0.5    1.9  2  Thi4           Thi4 family
    0.00048   18.9   2.5      0.039   12.6   1.4    3.1  4  HI0933_like    HI0933-like protein
     0.0011   18.1   3.7       0.45    9.5   2.3    3.4  3  GIDA           Glucose inhibited division protein A
     0.0011   18.1   0.0     0.0022   17.2   0.0    1.4  1  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
     0.0011   18.3   0.0      0.023   14.0   0.0    2.4  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
     0.0016   17.8   2.4     0.0023   17.2   0.5    2.2  3  FAD_binding_3  FAD binding domain
     0.0084   16.0   1.1        1.5    8.7   0.0    2.4  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
  ------ inclusion threshold ------
      0.017   15.1   0.3        4.9    7.1   0.4    2.7  2  NAD_binding_9  FAD-NAD(P)-binding
      0.017   14.5   0.6      0.048   13.0   0.0    2.1  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.7   0.0   8.4e-61   9.4e-58       1     294 []       7     326 ..       7     326 .. 0.94

  Alignments for each domain:
  == domain 1  score: 195.7 bits;  conditional E-value: 8.4e-61
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH........................HHHHCHHHHCCCC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias........................evvkklnqgiell 70 
                  +d +viG+Gp+G  aa+ l ++ga+v+++e     +g c ++g ++skal+++ ++  ++                          v++++++  + +
   CTQ27954.1   7 YDAIVIGSGPGGEGAAMGLVKQGARVAVIEryhnVGGGCTHWGTIPSKALRHAVSRIIEFNqnplysdhsrllrssfadilnhadSVINQQTHMRQGF 104
                  5789*************************99999*********************9977779*******************98885544455455555 PP

                  HCCTCEEEEESCEEEEETEEEC.....TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  71 lgeevvkidpgkkkvklekkke.....gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalak 163
                  ++++  +i +g++++++e++       g  e+++++k v+A Gs+p  +     a+  +++ r++ds+  l+l+  p+++++ G+G+iG+E+A+ ++ 
   CTQ27954.1 105 YERNHCEILQGNAHFVDEHTLAlechdGTVETVTAEKFVIACGSRPYHP-----ADVDFHHPRIYDSDSILSLQHEPRHVIIYGAGVIGCEYASIFRG 197
                  567889999999999999888799999999******************9.....34567788************************************ PP

                  HT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Pyr_redox_2 164 lgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelle.eklglelderggivv 260
                  + ++v l+  rdrll  ld+e+s+ l  ++ ++Gv ++++++ ++i+g ++ + ++l++g++++ad++++a G++ +t++l  e++gl++d+rg+++v
   CTQ27954.1 198 MEVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGVDDGVIMHLKSGKKLKADCLLYANGRTGNTDTLAlENIGLQTDSRGQLKV 295
                  ***************************************************999******************************************** PP

                  -TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 261 deflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  ++ ++t  p+iya+GDv+   g p la aA +qG
   CTQ27954.1 296 NSMYQTALPHIYAVGDVI---GYPSLASAAYDQG 326
                  ******************...**********998 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       7.9   8.9e+03      62      81 ..     181     200 ..     174     207 .. 0.79
   2 !  104.1   0.8   4.2e-33   4.7e-30       1     109 [.     346     457 ..     346     458 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7.9
                    EEEEEEECTTHHHHHHHHHH CS
  Pyr_redox_dim  62 vlGahivGpgageliqelav 81 
                    + Ga ++G + ++++ ++ v
     CTQ27954.1 181 IYGAGVIGCEYASIFRGMEV 200
                    78999999999998888776 PP

  == domain 2  score: 104.1 bits;  conditional E-value: 4.2e-33
                    BEEEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTS...BHHHHH CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagl...tvedla 93 
                    ipt ++t pe++svG+te++++a++++++vg+++fk+++ra++ +++ g++K++++++t+++lG+h++G++a+e+i+  +++++++    t+e + 
     CTQ27954.1 346 IPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMSVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGggnTIEYFV 441
                    79***********************************************************************************98888****** PP

                    TSBSSSSSTGGGGHCH CS
  Pyr_redox_dim  94 dtihihPtlsealkea 109
                    +t + +Pt++ea++ a
     CTQ27954.1 442 NTTFNYPTMAEAYRVA 457
                    ***********99866 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.9      0.02        23       2      35 ..       9      42 ..       8      47 .. 0.90
   2 !   58.9   0.0   4.7e-19   5.3e-16       1      77 [.     178     251 ..     178     258 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.02
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                ++v+G+G  g  +A  l + g++V v+er  ++ 
  CTQ27954.1  9 AIVIGSGPGGEGAAMGLVKQGARVAVIERYHNVG 42
                58**************************987765 PP

  == domain 2  score: 58.9 bits;  conditional E-value: 4.7e-19
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgvesvk 77 
                 +v++ G+G+ig+E+A++++ +  kV ++  +d+ll  lD+e+s+ l  ++ + g+ +++n++ e+ieg +dg   v 
  CTQ27954.1 178 HVIIYGAGVIGCEYASIFRGMEVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGVDDG---VI 251
                 79*********************************************************************9...33 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.2   0.00011      0.12       1      39 [.      10      48 ..       9      75 .. 0.90
   2 !   18.2   0.0   1.1e-06    0.0012     121     305 .]     135     310 ..     121     310 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg.nignsiyry 39
                 i+iG GP G +aa+ l k g  ++ ++E+  n+g   +++
   CTQ27954.1 10 IVIGSGPGGEGAAMGLVKQGA-RVAVIERYhNVGGGCTHW 48
                 89******************9.799***987888888887 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1.1e-06
  Pyr_redox_3 121 etyeAkkviiAtGefdkPnkl.nipGeeklvkhyskvk..efhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseieke.esdpsyslkpdi 214
                  et++A+k +iA G   +P+ + ++ + +  +  y  ++  ++ + + ++v++ G++  ++++A  +  ++ +V ++  ++ + +  ++++s sl+ + 
   CTQ27954.1 135 ETVTAEKFVIACGS--RPYHPaDVDFHH--PRIYDSDSilSL-QHEPRHVIIYGAGVIGCEYASIFRGMEVKVDLINTRDRLLAFlDQEMSDSLSYHF 227
                  789999999**998..666542455554..333333331144.5677899999*********************998777655541555665555554 PP

  Pyr_redox_3 215 enrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkk..slfeldedgrpvlteeteetnvpglflaG 305
                   n        + + +  n+e+++i+  +  + ++ ++gkk+++ d  ++a G + +++ l+    ++++d+ g+ ++++   +t +p ++ +G
   CTQ27954.1 228 WN--------SGVVIRHNEEYEKIEGVDDGVIMHLKSGKKLKA-DCLLYANGRTGNTDTLALenIGLQTDSRGQLKVNS-MYQTALPHIYAVG 310
                  44........33778899**********************886.77799****99999876622566666666666654.45799*****998 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   3.5e-09   3.9e-06       1      44 [.       8      51 ..       8     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 3.5e-09
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglva 44
                  D +V+G+gp+G  AA+   ++Ga+v+++e++  +GG  t  +  
    CTQ27954.1  8 DAIVIGSGPGGEGAAMGLVKQGARVAVIERYHNVGGGCTHWGTI 51
                  679**********************************9986654 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.2   1.3e-07   0.00014       1      54 [.      11      65 ..      11      80 .. 0.82
   2 ?    2.3   0.0      0.18     2e+02       3      31 ..     183     211 ..     181     213 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.3e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EE.CETTCEECTS---EEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasy.evpgvrvdygahifhg 54
                   ++G+G +G  aA  L k+g++v ++e+ + +GG ++ + ++p  ++ + ++ +  
     CTQ27954.1 11 VIGSGPGGEGAAMGLVKQGARVAVIERYHNVGGGCTHWgTIPSKALRHAVSRIIE 65
                   8*******************************99998844477666666665555 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.18
                    --SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8   3 GaGlsGlvaAylLakagfdvlllekrdrl 31 
                    GaG+ G+ +A+  +   ++v+l+ +rdrl
     CTQ27954.1 183 GAGVIGCEYASIFRGMEVKVDLINTRDRL 211
                    9**********************999986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   2.2   1.7e-07   0.00019       1      40 [.       8      48 ..       8      51 .. 0.96
   2 ?    1.5   0.0      0.11   1.2e+02     375     403 ..     284     314 ..     280     321 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.7e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS.GGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgg.ataw 40
                   D+iViGsG +G  AA+ + ++G++vav+e  +++gg  t+w
     CTQ27954.1  8 DAIVIGSGPGGEGAAMGLVKQGARVAVIERYHNVGGgCTHW 48
                   89********************************9999999 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
                    EEEBETTSBE..STTEEESSBTEEE-STCEE CS
  FAD_binding_2 375 Gvetdengrv..ldadgqpipGLYAaGevaa 403
                    G++td +g+    +  ++++p  YA+G v++
     CTQ27954.1 284 GLQTDSRGQLkvNSMYQTALPHIYAVGDVIG 314
                    99***9998766888899*********9984 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.5   3.1e-07   0.00034      18      63 ..       7      51 ..       1      64 [. 0.89
   2 ?   -1.5   0.0       1.1   1.2e+03      19      48 ..     178     206 ..     172     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.1e-07
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTT CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGql 63
                 D +++G+G+ G  aa  l k+ + +va++er   +GGG    G +
  CTQ27954.1  7 YDAIVIGSGPGGEGAAMGLVKQ-GARVAVIERYHNVGGGCTHWGTI 51
                699*******************.****************8776665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEE CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvaile 48 
                  v+i GaG  G   a ++    ++kv +++
  CTQ27954.1 178 HVIIYGAGVIGCEYASIFRGM-EVKVDLIN 206
                 69*******999988877665.77777765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   1.4   3.5e-05     0.039       2      36 ..       8      42 ..       7      46 .. 0.94
   2 ?   -1.9   0.0      0.89     1e+03     149     165 ..     133     149 ..     109     152 .. 0.75
   3 ?    3.2   0.0     0.026        29     115     163 ..     223     270 ..     214     280 .. 0.86
   4 ?   -3.4   0.0       2.6   2.9e+03     364     385 ..     292     313 ..     289     314 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.5e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 d iviG G+ G  aA+ + k+g+rV+++e+ +++g
   CTQ27954.1  8 DAIVIGSGPGGEGAAMGLVKQGARVAVIERYHNVG 42
                 89***************************998887 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.89
                  TTEEEEESEEEE----S CS
  HI0933_like 149 seeeleadklvlAtGGl 165
                  + e+++a+k v+A+G+ 
   CTQ27954.1 133 TVETVTAEKFVIACGSR 149
                  568999********975 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.026
                  HHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 115 llkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  l  +  ++gv +r ++e +++e  +dg + +++ks+++l+ad l+ A G
   CTQ27954.1 223 LSYHFWNSGVVIRHNEEYEKIEGVDDG-VIMHLKSGKKLKADCLLYANG 270
                  555666899************999999.999999************988 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 2.6
                  GB-TTT-BBTTSTTEEE-GGGB CS
  HI0933_like 364 evssktmeskkvpgLffaGEvl 385
                  +++ + m   ++p+++ +G v+
   CTQ27954.1 292 QLKVNSMYQTALPHIYAVGDVI 313
                  5778899999*********997 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   2.3    0.0004      0.45       1      33 [.       8      40 ..       8     163 .. 0.79
   2 !    5.2   0.0    0.0085       9.5       2      30 ..     179     207 ..     178     225 .. 0.85
   3 ?    0.0   0.0      0.31   3.5e+02     345     383 ..     292     332 ..     288     338 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0004
                CEEEE-SSHHHHHHHHHHHHTT--EEEE..ES-GG CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi..thkld 33
                d iViG G  G  AA+ + + Ga+v+ i      +
  CTQ27954.1  8 DAIVIGSGPGGEGAAMGLVKQGARVAVIerY--HN 40
                579************************9442..22 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0085
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLith 30 
                 vi+ G+G  Gce A     + +kv Li  
  CTQ27954.1 179 VIIYGAGVIGCEYASIFRGMEVKVDLINT 207
                 8999**********************944 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.31
                 GB-T.TSBBSSSBTEEE-CGGGTB-SHHHHHH..HHHHHHHH CS
        GIDA 345 qlln.tLetkkvkgLflAGqinGteGYeEaaa..qGllAGin 383
                 ql+  ++   + +++++ G++ G    +++aa  qG +A+  
  CTQ27954.1 292 QLKVnSMYQTALPHIYAVGDVIGYP-SLASAAydQGRIAAQA 332
                 677558888889***********97.5666667899999865 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.9e-06    0.0022     131     207 ..     123     192 ..      68     223 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.9e-06
  K_oxygenase 131 elltveskdaegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeif 207
                  + l +e+  ++g+ e+++a++ v++ G++p+ P+ ++  + ++r++ s+++l+ +   ++++++++ G+G  + e +
   CTQ27954.1 123 HTLALEC--HDGTVETVTAEKFVIACGSRPYHPADVDF-H-HPRIYDSDSILSLQ---HEPRHVIIYGAGVIGCEYA 192
                  3344444..79*************************95.4.49********9987...89**********9888743 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.15   1.6e+02      32      61 ..      10      39 ..       7      94 .. 0.85
   2 !   14.0   0.0     2e-05     0.023      27      70 ..     175     219 ..     159     254 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.15
                 EEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C 32 lviGgGvaGlqAiatakglgakVtvlDvrp 61
                 +viG G  G  A+   ++ ga+V v++  +
   CTQ27954.1 10 IVIGSGPGGEGAAMGLVKQGARVAVIERYH 39
                 799999999999999999999999988755 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2e-05
                  ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.T CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.l 70 
                  ep +v++ G+Gv G + +++ +g++ kV ++++r + l  l++ +
   CTQ27954.1 175 EPRHVIIYGAGVIGCEYASIFRGMEVKVDLINTRDRLLAFLDQeM 219
                  5889******************************99998888754 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.5   2.1e-06    0.0023       2      34 ..       7      39 ..       6      42 .. 0.94
   2 ?   -3.1   0.0       3.1   3.5e+03     139     161 ..     123     146 ..     100     149 .. 0.72
   3 ?   -1.0   0.0      0.73   8.2e+02     103     141 ..     215     253 ..     178     299 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.1e-06
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   +d +++G+Gp G  +a+ L ++G rv ++e++ 
     CTQ27954.1  7 YDAIVIGSGPGGEGAAMGLVKQGARVAVIERYH 39
                   6899***************************86 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.1
                    CCEEEECCTTEEEEEEE.EEEEE- CS
  FAD_binding_3 139 taevrdketgeeetvra.kYlvGa 161
                    ++ +++  +g+ etv+a k+++++
     CTQ27954.1 123 HTLALECHDGTVETVTAeKFVIAC 146
                    455556678899999996699999 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.73
                    -HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCE CS
  FAD_binding_3 103 pqteleriLvehaeerglqvrfktevesleqdeegvtae 141
                      +e+   L+ h  + g+ +r+++e+e +e  ++gv   
     CTQ27954.1 215 LDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGVDDGVIMH 253
                    344555667777777888888888888777666665444 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.4     0.023        26       4      31 ..      11      38 ..       8      50 .. 0.92
   2 !    8.7   0.0    0.0013       1.5       2      46 ..     179     223 ..     178     243 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.023
                EE--SCCHHHHHHHHHHTT-EEEEE-S- CS
     3HCDH_N  4 viGaGtmGagiaavfasagleVvlvdis 31
                viG+G  G+g a+ ++++g +V ++++ 
  CTQ27954.1 11 VIGSGPGGEGAAMGLVKQGARVAVIERY 38
                9***********************9985 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0013
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksl 46 
                 v + GaG++G + a++f   +++V l++++++ l+   +++++sl
  CTQ27954.1 179 VIIYGAGVIGCEYASIFRGMEVKVDLINTRDRLLAFLDQEMSDSL 223
                 7799*************************9999988888887766 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.4    0.0044       4.9       2      67 ..      11      81 ..      10     148 .. 0.73
   2 ?    5.2   0.0     0.018        20     117     155 ..     233     271 ..     208     272 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0044
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvwrtdqseelllNvpasemslftddp..........p 67
                   ++G Gp G  ++  L+++       ++ ++++ ++ g g  +  + ++   l  ++s++  f ++p           
     CTQ27954.1 11 VIGSGPGGEGAAMGLVKQ-----GARVAVIERyHNVGGGCTHWGTIPSK-ALRHAVSRIIEFNQNPlysdhsrllrS 81
                   8*****************.....59*******77778555555554444.444444444445555555555455544 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.018
  NAD_binding_9 117 vevhraevvdleeradgqavlladgaslaadaVvLAlGh 155
                    v  h++e +++e  +dg+ ++l++g++l+ad +  A G 
     CTQ27954.1 233 VIRHNEEYEKIEGVDDGVIMHLKSGKKLKADCLLYANGR 271
                    567999*************************99999885 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.8       5.3   5.9e+03      41      70 ..      11      40 ..       9      46 .. 0.88
   2 ?   13.0   0.0   4.3e-05     0.048      25      70 ..     165     210 ..     144     260 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.3
                  EES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C 41 iiGlGrIGqavakrlkafgmkviaydrskk 70
                  +iG G  G+ +a  l + g++v +++r+++
    CTQ27954.1 11 VIGSGPGGEGAAMGLVKQGARVAVIERYHN 40
                  799999999999999999999999999976 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4.3e-05
                   TTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  25 sekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskk 70 
                   +++++l+ + + + v i G+G IG + a +++++++kv  ++++ +
    CTQ27954.1 165 DSDSILSLQHEPRHVIIYGAGVIGCEYASIFRGMEVKVDLINTRDR 210
                   55667777888899************************99998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 3760.92
//
Query:       CTQ27955.1  [L=211]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-08   33.2   1.9    3.4e-08   33.2   0.1    2.0  2  TetR_N     Bacterial regulatory proteins, tetR family
     0.0018   19.0   2.6     0.0018   19.0   2.6    1.7  1  TetR_C_15  Tetracyclin repressor-like, C-terminal domain
     0.0048   17.2   0.0        1.2    9.5   0.0    3.2  3  HTH_Tnp_1  Transposase


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1   5.6e-12   3.4e-08       7      43 ..      23      59 ..      16      61 .. 0.86
   2 ?   -2.6   0.2      0.86   5.1e+03      28      36 ..     191     199 ..     191     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 5.6e-12
                HHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHH CS
      TetR_N  7 elfaerGydattvreIAkrAGvskgalYryFpsKeeL 43
                +l aer ++++++re+A++AG+++ ++Yr+F++ +eL
  CTQ27955.1 23 QLSAERSFASLSLREVAREAGIAPTSFYRHFRDVDEL 59
                5679***************************986665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.86
                 SSHHHHHHH CS
      TetR_N  28 vskgalYry 36 
                 +skga Y+y
  CTQ27955.1 191 ISKGAYYWY 199
                 699**9*99 PP

>> TetR_C_15  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   2.6   2.9e-07    0.0018       5     101 ..      88     185 ..      86     189 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.9e-07
   TetR_C_15   5 aldalvdallaahrenpalrrvlleeapslgel..elvealeqriaealaalLarrrpelppedlelaafvaveaveallhlaleedpadrealiaelk 101
                 ++++ v +++++   np   r+ll+e++   ++  ++v++  q+++++la++L+  ++  + + +e  a+ +v++v +    al  +p++r++l++ l+
  CTQ27955.1  88 VIRTSVSTFMEFIGNNPNAFRLLLRERSGTSAAfrAAVAREIQHFIAELADYLELENHMPR-AFTEAQAEAMVTIVFSAGAEALDVGPEQRRQLEERLV 185
                 68999************99999999995544444788888889999********9997777.99*******************************9987 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00021       1.2      23      48 ..      32      57 ..      23      85 .. 0.76
   2 ?   -0.4   0.0      0.24   1.4e+03      36      70 ..     103     136 ..      90     141 .. 0.67
   3 ?    3.5   0.0     0.015        88       4      29 ..     147     172 ..     145     176 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00021
   HTH_Tnp_1 23 gksvsevArrhgvspnqLykWrrqyr 48
                + s +evAr+ g+ p ++y+  r + 
  CTQ27955.1 32 SLSLREVAREAGIAPTSFYRHFRDVD 57
                67889*************98766664 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.24
   HTH_Tnp_1  36 spnqLykWrrqyregeeaspaefeltaleeenrel 70 
                 +pn+++   r+ ++ ++a  a  +++++++ ++el
  CTQ27955.1 103 NPNAFRLLLRERSGTSAAFRAA-VAREIQHFIAEL 136
                 6666666666665666666666.777777777666 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.015
   HTH_Tnp_1   4 rrrwsdefKariVreslepgksvsev 29 
                 +r +++++ +++V  ++++g+   +v
  CTQ27955.1 147 PRAFTEAQAEAMVTIVFSAGAEALDV 172
                 689****************9976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1611.54
//
Query:       CTQ27956.1  [L=119]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-51  171.2   1.1    6.7e-51  171.1   1.1    1.0  1  DUF1422   Protein of unknown function (DUF1422)
     0.0021   17.9   3.9     0.0025   17.7   3.9    1.1  1  Bax1-I    Inhibitor of apoptosis-promoting Bax1
  ------ inclusion threshold ------
        5.8    7.2   7.0        5.9    7.2   4.5    2.0  2  DUF1772   Domain of unknown function (DUF1772)


Domain annotation for each model (and alignments):
>> DUF1422  Protein of unknown function (DUF1422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   1.1   1.1e-54   6.7e-51       3     113 ..       4     114 ..       2     115 .. 0.98

  Alignments for each domain:
  == domain 1  score: 171.1 bits;  conditional E-value: 1.1e-54
     DUF1422   3 kkaekktllLaliaGlslngtlsalfsslvpfsifplialvlavyclyqrYlnksleeglPllalacfllGvlgysalvraeyPeiGsnflsvvllvvl 101
                 + ++k+tllLaliaGls+ng+++alfss+vpfs+fp+++l+l+vycl+qrY+n+s++ glP la+a+f+lGvl+ys++vraeyP+iGsnf+++vl+v++
  CTQ27956.1   4 SVQDKGTLLLALIAGLSINGAFAALFSSIVPFSVFPILSLLLTVYCLHQRYQNRSMPVGLPGLAAAFFILGVLLYSTVVRAEYPDIGSNFFPAVLSVAM 102
                 6799*********************************************************************************************** PP

     DUF1422 102 vlwiglklkirk 113
                 v+wig+k+++rk
  CTQ27956.1 103 VFWIGYKMRNRK 114
                 *********987 PP

>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   3.9   4.2e-07    0.0025      12     112 ..      14     105 ..       8     116 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.2e-07
      Bax1-I  12 algllltalvaavvlsspaqlflslhivlflvvilaplalvflslsaarlkkkssalalallllftlleGlslspillvyt....gaiilqaflltaai 106
                 al  +l++ +a+++l          +iv f v+ +++l+l + +++++r +++s ++ l+ l +  ++ G++l ++++ +     g+    a+l  a++
  CTQ27956.1  14 ALIAGLSINGAFAAL--------FSSIVPFSVFPILSLLLTV-YCLHQRYQNRSMPVGLPGLAAAFFILGVLLYSTVVRAEypdiGSNFFPAVLSVAMV 103
                 222223333333332........2335677788887777776.889999999999999**********************9555555555555555544 PP

      Bax1-I 107 fgglsl 112
                 f     
  CTQ27956.1 104 F----W 105
                 4....4 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.5   0.00099       5.9      25      84 ..      22      82 ..       6      87 .. 0.69
   2 ?   -0.0   0.0      0.17     1e+03      35      52 ..      90     108 ..      84     118 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00099
     DUF1772 25 lkqwrrlfkrgkavfpp..lallsalafayla..araasrgarllylaaaal.lllsivpyTllv 84
                + ++++lf   ++++p+  + +ls+l+++y    + + ++   +l  ++aa+ ++l++++y+ +v
  CTQ27956.1 22 NGAFAALF---SSIVPFsvFPILSLLLTVYCLhqRYQNRSMPVGLP-GLAAAfFILGVLLYSTVV 82
                55677777...66677766788888888877674444444445555.666665999999998765 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.17
     DUF1772  35 gkavfpplallsalafa.y 52 
                 g+ +fp+++ ++ + ++ y
  CTQ27956.1  90 GSNFFPAVLSVAMVFWIgY 108
                 5667776444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 973.37
//
Query:       CTQ27957.1  [L=366]
Description: tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.1e-190  632.2   0.2   2.4e-190  632.1   0.2    1.0  1  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
    2.6e-06   28.0   0.0    1.8e-05   25.3   0.0    2.3  3  Methyltransf_25  Methyltransferase domain
    6.2e-05   22.5   0.1    0.00011   21.7   0.1    1.4  1  Methyltransf_4   Putative methyltransferase
    0.00022   20.8   0.0    0.00038   20.1   0.0    1.4  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
    0.00022   20.9   0.2    0.00078   19.1   0.2    1.8  1  Cons_hypoth95    Conserved hypothetical protein 95
    0.00047   19.8   0.1     0.0009   18.8   0.1    1.4  1  MTS              Methyltransferase small domain
    0.00087   19.9   0.0     0.0025   18.4   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
     0.0026   17.2   0.1     0.0042   16.5   0.1    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
  ------ inclusion threshold ------
      0.015   15.1   0.1      0.031   14.1   0.1    1.4  1  Methyltransf_31  Methyltransferase domain
      0.018   14.8   0.0      0.027   14.2   0.0    1.3  1  Met_10           Met-10+ like-protein
      0.029   14.0   0.0      0.059   13.0   0.0    1.4  1  DUF3164          Protein of unknown function (DUF3164)
      0.083   13.6   0.0       0.21   12.4   0.0    1.7  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  632.1   0.2  1.6e-193  2.4e-190       1     357 []      10     366 .]      10     366 .] 1.00

  Alignments for each domain:
  == domain 1  score: 632.1 bits;  conditional E-value: 1.6e-193
  tRNA_U5-meth_tr   1 eyeaqleekksrlkkllaefeapelevfespeehyrlraefrlwheeddlyyimfdqktkkkirvdefdaaselinelmkallaalkqdeklre 94 
                      +yeaql+ek+ rl++++a+f+ap +evf+sp +hyr+raefrlwh++ddly+i+fdq+t+++irvd+f+aas lin+lm+a+l+ +++++ lr+
       CTQ27957.1  10 QYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFDQQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQ 103
                      69******************************************************************************************** PP

  tRNA_U5-meth_tr  95 klfqvdflstlsgellvsllyhkklddewkeaaealkdkleaqeldvnligrarkkkivldkdyveeklevadrelvyrqvensftqPnaavne 188
                      klfq+d+l+tls++++vsllyhkkldd+w+e+aeal+d+l++q+l+v+ligra+k+ki ld+dy++e+l+v +re++yrqvensftqPnaa+n+
       CTQ27957.1 104 KLFQIDYLTTLSNQAVVSLLYHKKLDDAWREQAEALRDTLRTQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVENSFTQPNAAMNI 197
                      ********************************************************************************************** PP

  tRNA_U5-meth_tr 189 kmleWalevtqeskgdllelycGnGnfslalarnfekvlateiakssveaaqyniaankidnvqiirlsaeeltealkkkrefrrlkgidlksy 282
                      +mleWal+vt+ ++gdllelycGnGnfslalarnf +vlateiak+sv+aaqyniaan+idnvqiir++aee+t+a++++r+f+rl+gidl+sy
       CTQ27957.1 198 QMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSY 291
                      ********************************************************************************************** PP

  tRNA_U5-meth_tr 283 afetifvdPPraGldketvklvkkyerilyiscnPetlkenleelsethrverlalfdqfpythhlesGvllekk 357
                      ++etifvdPPr+Gld+et k+v++y+rilyiscnPetl+ nle+ls+th+v+rlalfdqfpythh+e+Gvll++k
       CTQ27957.1 292 QCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTRK 366
                      ************************************************************************986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.9   5.9e+03      79      92 ..     129     142 ..      84     153 .. 0.58
   2 !   25.3   0.0   1.2e-08   1.8e-05       2      61 ..     215     273 ..     214     280 .. 0.93
   3 ?   -1.7   0.0       3.3   4.9e+03      22      58 ..     293     329 ..     281     356 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.9
                      HHHHHHHHHHHHHH CS
  Methyltransf_25  79 dedlekalkeiarv 92 
                      d+ +++  + +++ 
       CTQ27957.1 129 DDAWREQAEALRDT 142
                      23344444444444 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 1.2e-08
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSS CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfe 61 
                      L+l cG+G+++lala+++   +v++++i++  ++aa+ +++++++ nv+++++ ae++ ++
       CTQ27957.1 215 LELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIdNVQIIRMAAEEFTQA 273
                      8999*************9..9*******************99999**********998765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3.3
                      SEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGB CS
  Methyltransf_25  22 akvtgvDiseemleaareraeeeglnvefvqgdaedl 58 
                      ++ + vD+  + l+   e++ ++ +++ ++ ++ e+l
       CTQ27957.1 293 CETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETL 329
                      5666667666666666666666666665555555544 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   7.3e-08   0.00011       5      67 ..     214     273 ..     211     289 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7.3e-08
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHC CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllel 67 
                     +le+ cG+G+f +alA ++    +l+ Ei +++va++  +i+a+++ N++i+r  a ++ + +
      CTQ27957.1 214 LLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ-A 273
                     68999***********998..5689*****************************9944443.3 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.5e-07   0.00038       4      86 ..     214     307 ..     211     337 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.5e-07
  Methyltransf_15   4 ilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgvsdkitlvlgdvfe............llaklklekikvdlvflSpPwGGps 85 
                      +l l++G G  + ++a++f++v a ei +  +a aq N  +  + d+++++    +e             l+ + l++ + + +f+ pP  G +
       CTQ27957.1 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEftqamngvrqfnRLQGIDLHSYQCETIFVDPPRSGLD 306
                      6899**********************************999877.344444444444448999999999889999999999********99987 PP

  Methyltransf_15  86 Y 86 
                       
       CTQ27957.1 307 S 307
                      5 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   5.2e-07   0.00078      41     122 ..     210     301 ..     193     325 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.2e-07
                    CC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HH.........HHCTS--...SS-EEEEEEE--S CS
  Cons_hypoth95  41 egarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedale.........allklak...kkeefdivflDPP 122
                        +L+l++G+G  +l Al R+ +++++ e  k  v++ + n+++ ++++ ++++++ a+e         ++++l +   ++ + + +f+DPP
     CTQ27957.1 210 ATGDLLELYCGNGNFSL-ALARNFDRVLATEIAKPSVAAAQYNIAANHIDN-VQIIRMAAEEftqamngvrQFNRLQGidlHSYQCETIFVDPP 301
                    55679***********9.****************************99998.444444443300000000022222211113445566777777 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1     6e-07    0.0009      30      87 ..     207     265 ..     188     280 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6e-07
                 C..TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE- CS
         MTS  30 e..lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvas 87 
                 +  ++g++l l cG+G  ++ala++ ++  v ++++ + ++++a+ n++an+++ v+++  
  CTQ27957.1 207 TkgATGDLLELYCGNGNFSLALARNFDR--VLATEIAKPSVAAAQYNIAANHIDnVQIIRM 265
                 33477899****************9999..9**********************98665543 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.6e-06    0.0025       1      55 [.     215     270 ..     215     277 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.6e-06
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCT CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvefvvadaekl 55 
                      L++ cG+G ++ ala+++ rv++++++k  +++a+ ++  +++ +v+++++ ae++
       CTQ27957.1 215 LELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIdNVQIIRMAAEEF 270
                      5666*************************************99*999*99999974 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   2.8e-06    0.0042     149     221 ..     194     269 ..     189     279 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.8e-06
        PrmA 149 klclealekl...vkege..evlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.klevalseel 221
                 ++ +++le      k+ +   +l + +G G  ++a a+ + ++v+a+ i + +v +a+ N++ N++++ ++ + +++e 
  CTQ27957.1 194 AMNIQMLEWAldvTKG-AtgDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHIDNvQI-IRMAAEE 269
                 6777888766332232.235899***********9887.899*************************9666.5444444 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.1e-05     0.031       7      69 ..     214     273 ..     209     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.1e-05
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieelekl 69 
                      +l+l CG+G+++++la++     +v   +i + ++  A+ n + + +dnv+  +  +ee+ ++
       CTQ27957.1 214 LLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273
                      78999***********553...36***************************999888886654 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.8e-05     0.027     105     165 ..     215     272 ..     206     326 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
                 EETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG--- CS
      Met_10 105 vdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevir 165
                 ++++ G G f++++a+  +  rvla ++   sv   + ni+ N++++ v+ i + ++e+++
  CTQ27957.1 215 LELYCGNGNFSLALAR--NFDRVLATEIAKPSVAAAQYNIAANHIDN-VQIIRMAAEEFTQ 272
                 67899**********9..9999***********************87.5689999999975 PP

>> DUF3164  Protein of unknown function (DUF3164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.9e-05     0.059      95     168 ..      75     146 ..      58     162 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.9e-05
     DUF3164  95 derlqaAKelideclkewsegadeeikalvedaFqvdkeGkintkriLsLrrldiedekWkkAmeaisdsvqvv 168
                 d    aA +li++ ++   eg +++  +l ++ Fq+d   +++++ ++sL   +  d+ W++  ea++d+++ +
  CTQ27957.1  75 D-SFPAASALINQLMTAMLEGVRNN-PVLRQKLFQIDYLTTLSNQAVVSLLYHKKLDDAWREQAEALRDTLRTQ 146
                 4.4678999*********9999987.7899***************************************99866 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014      0.21       1      58 [.     215     270 ..     215     291 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdl 58 
                      Le+ cG+G+++ al+++  + ++++++i + ++++a+  +a+++ +n++ ++  a++ 
       CTQ27957.1 215 LELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF 270
                      7888*************..**************9999999999999988888777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2895.69
//
Query:       CTQ27958.1  [L=612]
Description: vitamin B12/cobalamin outer membrane transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-39  137.3  56.8    3.4e-39  136.0  56.9    1.6  1  TonB_dep_Rec     TonB dependent receptor
    9.1e-28   97.0   0.8    9.1e-28   97.0   0.8    2.0  2  Plug             TonB-dependent Receptor Plug Domain
  ------ inclusion threshold ------
      0.068   13.2   0.1       0.24   11.5   0.1    1.9  1  Pro_Al_protease  Alpha-lytic protease prodomain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.0  56.9   5.7e-43   3.4e-39      22     470 .]     170     611 ..     151     611 .. 0.69

  Alignments for each domain:
  == domain 1  score: 136.0 bits;  conditional E-value: 5.7e-43
                   EEEETTTTEEEEEEE.............EEEEEEEEEECCCEECCCEEECECCEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE....... CS
  TonB_dep_Rec  22 lrytdggdlgsalsr.............gylgtnplyygdnysetdnkrlrlgydydlddnlswklslraglnYsstdgdsdynnsglgg....... 98 
                   ++y+++++  ++ +              +  ++++++ + + ++++nk+l  g+++++ddn+s    +r g++Ys + ++++ n ++ gg       
    CTQ27958.1 170 QSYDGAFNKRFGDTLvtaagayqttkgfNVQPNSSYSGDSDRDGYRNKMLWGGVQHQFDDNFSG--FFR-GYGYSANADYDQGNWGYAGGndedqsy 263
                   2222222222222223334444444433444444433333377888999999999999999444..777.777775555555555555555555555 PP

                   ...................EEEEEEEE..CEEEEEEEEEEEEEE.....EEEEE........EE.EEEEEEEEEEE..EEEEECCBEESCCTCCSEE CS
  TonB_dep_Rec  99 ...................grsynrdn..dyyglgnvlaaeldl.....ngdlw........fG.snladgldyrk..lsddgydaydplnpsgdas 158
                                       ++y+r    +y ++ +++aa  +l     +   +        +G    + g+d+++  l++          + ++++
    CTQ27958.1 264 tqswdtglhyhsgiyssqlIANYQRIKdyNYSSDAGRYAAGTTLddmeqR---YiqwgnnvvVGhGAVSGGVDWKQekLKS---------SG-TTST 347
                   55555545555555444442222222222222233333333333222221...0222333345566666667777522222.........34.5999 PP

                   EEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEETTCSSSS...EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEECCCCCEEE CS
  TonB_dep_Rec 159 dsvdrdsyglyaqdnikltdrltltlGlRydhysvfgkdlragafsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggsngaggals 255
                   d+++rd++gly+  + ++ d +tl++++R dh ++f            g++ +++ ++++ ++d+ +   sy++gf aPslg++y+     a  +++
    CTQ27958.1 348 DVYKRDTTGLYLTGQQQI-DSVTLEASGREDHDEQF------------GWHGTWQTAAGWEFIDGYRTTLSYGTGFLAPSLGQQYG-----AERFGI 426
                   999***************.*****************............7999**********************************.....678888 PP

                   ECSTT---EEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEESSSSCSTTTCSEEEEEEEEEEEEEEEEEEEEEEETTEE.EEEEEEEEEEEEECE CS
  TonB_dep_Rec 256 ngnpdLkPEtsknyelGlkldddrlnltlayFridiknfittdpdgpslgglgdfqyqNvgkarikGvElelsyrltpgWg.lglsgggytYydagd 351
                     np+LkPE+sk++e+Gl+   +  ++ l+++r +i+n+i++d+          + y+Nv +a+ikG+E +++ +     g +    + + Y d +d
    CTQ27958.1 427 ASNPNLKPEESKQWEAGLEGLTGPVDWRLSAYRYEIQNLIDYDN----------NAYYNVKSATIKGLEWTGNIT----TGpVEHHLT-LQYVDPRD 508
                   88999**************7778899******************..........5667************66555....235555567.88888877 PP

                   CEEECTTTTSSTTEESEEEEEEEEEEC..SEEEEEEEESEEEEEEECCSSEEEEECECCEE.EE--EEEEEEEEEEEESSSEEEEEEEESTTETCSC CS
  TonB_dep_Rec 352 dsdaddggnplpnvPkhtanlgltYkf..paggWgaglllagarYvavggrrygdaantfr.rvpgYtlldlslgYklpknltlslgvnNLfdkryy 445
                   d     +++ l +  k++++    Y+   + +++g     ++++Y + g+r+++d++n+ +   +g  l+d+ l+Y+++++lt+++ + NLfdk   
    CTQ27958.1 509 D----ETNKILYRRAKQQVK----YELngQVYDLG-----WDVTYHYIGKRYDYDYDNSRTvNMGGLSLWDVGLSYPVTSHLTVRGKIANLFDKD-- 590
                   7....555555556777777....52212344455.....48899999*********77778*******************************54.. PP

                   EEESTT.TTTCCEB--SEEEEEEEEE CS
  TonB_dep_Rec 446 assgyy.glggypgpgRtfrlglryk 470
                        y + +gy+ +gR ++l+ +y+
    CTQ27958.1 591 -----YeTVYGYQSAGREYTLSGSYT 611
                   .....4459999**********9996 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.8   1.5e-31   9.1e-28       4     108 .]      41     146 ..      38     146 .. 0.96
   2 ?   -3.6   0.0       2.9   1.7e+04      26      45 ..     188     207 ..     182     216 .. 0.64

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 1.5e-31
                 CCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESC.CCCSCTCGCSSBGGGEEEEEEEESSCHCTTS CS
        Plug   4 dtpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpian.ggsgagdlssidpedierievlkGpasalyG 101
                 ++ +++++vt++di++ ++++l+d+++++pgv+++ +gg g+++s+++RG+++++vlvl+DGvp+a  g s+++d+s+i++++++r+e ++Gp sa yG
  CTQ27958.1  41 TVLAPTDIVTRDDIDRWQSKDLNDVMRRLPGVDIARNGGMGQSASLYVRGTEARHVLVLIDGVPMARpGISNGVDISQIPISLVQRVEYIRGPRSAVYG 139
                 5678999************************************************************8889999************************* PP

                 STGSSEE CS
        Plug 102 sdaigGv 108
                 s+aigGv
  CTQ27958.1 140 SGAIGGV 146
                 ******8 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.9
                 HHHHTTSTTEEEECCCCSTT CS
        Plug  26 adalqgvpgvnvsssggggg 45 
                 a a q++ g+nv+ +++ +g
  CTQ27958.1 188 AGAYQTTKGFNVQPNSSYSG 207
                 56778888888844433333 PP

>> Pro_Al_protease  Alpha-lytic protease prodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     4e-05      0.24      12      41 ..       6      33 ..       3      39 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4e-05
  Pro_Al_protease 12 aLdraaaraaaavtaWyVDvatNkVVVtad 41
                     +L  +a ++ +a ++W+ D  ++++VVta+
       CTQ27958.1  6 SLM-TALSV-TAFSGWAQDSNSDTLVVTAN 33
                     555.33333.599****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4311.04
//
Query:       CTQ27959.1  [L=283]
Description: glutamate racemase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-26   91.2   0.0      1e-25   90.9   0.0    1.1  1  Asp_Glu_race  Asp/Glu/Hydantoin racemase


Domain annotation for each model (and alignments):
>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0   5.8e-30     1e-25       3     223 ..      26     235 ..      24     236 .. 0.76

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 5.8e-30
                   EC.SCCCCHHHHHHHHHHBTTSSGGGS..EEEEE-CC.S-TCHHHHHCH.T..THHHHHHHHHHHHC.TTESEEEE--CHHHHH.HHHHHHH-SSEE CS
  Asp_Glu_race   3 gm.gpeatlsvlrklveatpaesdqehlplivlndsa.ipdrteaieeesgddpvlklleaakkLek.agadaiviaCnTahav.adelqkkikiPv 95 
                   ++ +++++lsv++++++ +p+        +i+  d+  +p + e+     ++ +v++  e + + ++     ++viaCnTa++v +++l++k  +Pv
    CTQ27959.1  26 VFdSGVGGLSVYNEIRQLLPNLH------YIYAFDNVaFP-YGEKS----EEFIVERVVEIVTAVQQrYPLALAVIACNTASTVsLPALREKFAFPV 111
                   7889*******************......78777766477.44444....2336888888888887746678899******876378888******* PP

                   EECHHHHHHHHHH.HSS-EEEEEE-HHHHHCTHHHHHHHHHGT.EEE....T-CCCHHCCHC.HHHH.TT-.TTSH.HHHHHHHHHHHHHTTT-SEE CS
  Asp_Glu_race  96 lgiveataealka.tgvkkvglLgTrgtlksglyqkeleanqgievvvpseelqssvnqaiy.eelk.aGe.vtee.arrailkllerlaergadav 187
                   +g+v ++++ +++ t ++ vglL+Trgt+k    ++ + + +  e  ++    ++    +++ +e+k +Ge v+ e  rr +++ l+ + +++ d+v
    CTQ27959.1 112 VGVV-PAIKPAARlTANGIVGLLATRGTVKRPYTRELIDR-FANECRIEMLGSAE----LVElAEAKlHGEpVPLEeLRRILRPWLR-M-QEPPDTV 200
                   **55.566666666***************98877777666.44333222222222....2233467778887999956666666666.6.8999*** PP

                   EE-STTHHHHHHHHHHCC-TT.SEEEEHHHHHHHHH CS
  Asp_Glu_race 188 iLGCTelplllekaealekeksvpvidptdilaret 223
                   +LGCT++pll+e+++++ +e + ++id+++++ar t
    CTQ27959.1 201 VLGCTHFPLLQEELQRVLPE-GTRLIDSGAAIARRT 235
                   *******************8.6***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2165.57
//
Query:       CTQ27960.1  [L=466]
Description: fumarate hydratase (fumarase C),aerobic Class II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.2e-121  403.8   0.2   7.4e-121  403.3   0.2    1.2  1  Lyase_1      Lyase
    3.8e-25   88.0   0.4    1.5e-24   86.2   0.1    2.1  2  FumaraseC_C  Fumarase C C-terminus


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.3   0.2  8.2e-125  7.4e-121       1     312 []      12     342 ..      12     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: 403.3 bits;  conditional E-value: 8.2e-125
                 CEEEEETCHHHHHHHHHHHHHGGGHHHHHC.....HHHHHHHHHHHTTSST....HHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHH CS
     Lyase_1   1 grftvkadklmgiftersrenfrlseedik.....alaalkkaaakanvdl....keeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnev 90 
                 g ++v+adkl+g++t+rs+e+fr+s e+       ala++k+aaak+n+dl    +e+a ai++a+devl+ gk+ ++f+l+ +q+gsgt++nmn+nev
  CTQ27960.1  12 GAIEVPADKLWGAQTQRSLEHFRISTEKMPgeliyALALTKRAAAKVNQDLglltAEKAGAIVAAADEVLA-GKHAQEFPLAIWQTGSGTQSNMNMNEV 109
                 6799*********************7666699***************************************.*************************** PP

                 HH....HHTT......HSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHH CS
     Lyase_1  91 ig....ellg......ekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaeal 179
                 ++    ellg      +k++pnd+v+++qSsnD++pTa+++a+  al+ek++p l+ L+ +l+eka++f+d+vkiGrThlqdAtP+tlgqe+s+++++l
  CTQ27960.1 110 LAnrasELLGgergmaRKIHPNDDVNKSQSSNDVFPTAMHVAALIALREKVIPSLQALRATLNEKAVAFRDIVKIGRTHLQDATPLTLGQEISGWVAML 208
                 ***9999999999999*********************************************************************************** PP

                 HHHHHHHHHHHHHHTCEETTTTTTTSSTTTSCCTHHHHHHHHHHHHHCST.EESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT.TSS CS
     Lyase_1 180 erdrerlkellkrllvellgggtavgtglnadpefaelvakelakvtglp.vkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssge.agl 276
                 ++++++++ ++  +l+el+ ggtavgtgln++pe+a +va+ela ++g+p v+apn+fea+++ Da+v ++galk la+sL+k+a+D+r+l+sg+ +g+
  CTQ27960.1 209 DHSLKHIEASQ-PHLAELALGGTAVGTGLNTHPEYAVRVAAELASLSGQPfVTAPNKFEALATVDALVHAHGALKGLAASLMKIANDVRWLASGPrCGI 306
                 *******9999.*************************************************************************************** PP

                 EEEEGCCTSSC-TTSTTTEBTHHHHHHHHHHHHHHH CS
     Lyase_1 277 velslaesepGSSiMPgKvNPvqlElltgvagrvvG 312
                 +e+ ++e+epGSSiMPgKvNP+q+E+lt+v+++v+G
  CTQ27960.1 307 GEIAIPENEPGSSIMPGKVNPTQCEALTMVCCQVMG 342
                 ***********************************9 PP

>> FumaraseC_C  Fumarase C C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.33     3e+03      31      47 ..      58      74 ..      47      77 .. 0.75
   2 !   86.2   0.1   1.6e-28   1.5e-24       1      54 []     408     461 ..     408     461 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.33
                 HHHHTT-.-HHHHHHHT CS
  FumaraseC_C 31 avlelgllteeeldell 47
                 +  +lgllt+e+  +++
   CTQ27960.1 58 VNQDLGLLTAEKAGAIV 74
                 55679999999977766 PP

  == domain 2  score: 86.2 bits;  conditional E-value: 1.6e-28
                  GGGGGHHHHHHHHHHHHHHHHHHHT--HHHHHHHTT-.-HHHHHHHT-HHHHH. CS
  FumaraseC_C   1 LVTaLnphIGYekAakIAkeAlkegktlreavlelgllteeeldelldpekMtg 54 
                  LVTaLn hIGY+kAa+IAk+A++eg tl+  +l+lg+lte+e+d +++pe+M+g
   CTQ27960.1 408 LVTALNTHIGYDKAAEIAKKAHHEGLTLKASALALGYLTEAEFDSWVRPEEMVG 461
                  8***************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3794.62
//
Query:       CTQ27961.1  [L=310]
Description: inhibitor of replication at Ter, DNA-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-134  448.0   0.6   1.4e-134  447.8   0.6    1.0  1  Ter       DNA replication terminus site-binding protein (Ter 


Domain annotation for each model (and alignments):
>> Ter  DNA replication terminus site-binding protein (Ter protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  447.8   0.6  7.5e-139  1.4e-134       1     296 []       9     306 ..       9     306 .. 0.99

  Alignments for each domain:
  == domain 1  score: 447.8 bits;  conditional E-value: 7.5e-139
         Ter   1 rlneqfeqleealaalkqeleqlellaarvfeLPevekgkEhepvekikvtqltgeeAlelalshfrrlfikqqseklSskaavRlpGvlcfsvsnaek 99 
                 rln++f+q+e +l+al+q+l++++lla+rvfeLP++ k++Eh+p+++i v q+ g++Al+ al+h+++lfi+qqse++SskaavRlpG++c++v++ae+
  CTQ27961.1   9 RLNNTFRQIELELQALQQALSDCRLLAGRVFELPAIGKDAEHDPLATIPVVQHIGKTALAHALRHYSHLFIQQQSENRSSKAAVRLPGAICLQVTAAEQ 107
                 69************************************************************************************************* PP

         Ter 100 aelealieeiNklKaeleeiitvesglekeerFefvhrhlpglitlnayRkltllenpssvrFgWanKqiikkltreevleqLekslkapravapytre 198
                 ++l a+i++iN+lKa++e+i+tv sgl++++rFe+vhrhlpglitl+ayR+lt l +ps++rFgWanK++ik+ltr++vl +Leksl+aprav+p+tre
  CTQ27961.1 108 QDLLARIQHINALKATFEKIVTVDSGLPPTARFEWVHRHLPGLITLSAYRTLTPLIDPSTIRFGWANKHVIKNLTRDQVLMMLEKSLQAPRAVPPWTRE 206
                 *************************************************************************************************** PP

         Ter 199 qwqekveqeiqdvkslPekakLkikRpvkvqPiarvwyaeqqkqvqlacplPllvlceeee..evpklgeLknYdaenikkrqkpkakklelliprLhl 295
                 qwq+k+e+e+qd+++lP++a+LkikRpvkvqPiarvwya++qkqvq+acp+Pl++l++ ++  +vp++geL nYda+n++ r+kp+a++l+lliprLhl
  CTQ27961.1 207 QWQSKLEREYQDIAALPQRARLKIKRPVKVQPIARVWYAGEQKQVQYACPSPLIALMSGSRgvSVPDIGELLNYDADNVQYRYKPEAQSLRLLIPRLHL 305
                 **********************************************************999999**********************************9 PP

         Ter 296 y 296
                 +
  CTQ27961.1 306 W 306
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.34
# Mc/sec: 2693.91
//
Query:       CTQ27962.1  [L=433]
Description: sensory histidine kinase in two-component regulatory system with RstA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-21   76.9   0.0      3e-21   76.0   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    4.9e-07   29.7   1.1    4.9e-07   29.7   1.1    2.4  2  HisKA        His Kinase A (phospho-acceptor) domain
    4.1e-06   27.1   0.1    1.5e-05   25.2   0.0    2.1  2  HAMP         HAMP domain
    6.5e-05   22.8   0.0     0.0001   22.1   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
      0.002   18.1   0.0     0.0036   17.3   0.0    1.4  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.027   14.5   0.1       0.25   11.3   0.0    2.5  2  R3H          R3H domain
       0.12   12.3   0.0       0.26   11.2   0.0    1.5  1  HATPase_c_5  GHKL domain
        3.2    7.8   5.2        2.5    8.1   0.0    2.3  2  Holin_BlyA   holin, BlyA family


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   1.3e-24     3e-21       6     109 ..     320     422 ..     316     425 .. 0.90

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 1.3e-24
                 HHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEE CS
   HATPase_c   6 LrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGtt 103
                 ++++++nlv Na++++  ++++ v+++ +  + ++ veD+G+Gi +e+++++fe+f++ d s++r +gg GlGl+iv+++++ mgGe+++e +p +G +
  CTQ27962.1 320 MERVLDNLVNNALRYS--SQRVAVSLTLQGSRASLLVEDDGPGIAPEERERVFEPFVRlDPSRDRATGGCGLGLAIVHSIAQAMGGEVRCEASPLGGAR 416
                 5789**********94..55566666644679******************************************************************* PP

                 EEEEEE CS
   HATPase_c 104 ftftlp 109
                 f f+ p
  CTQ27962.1 417 FCFSWP 422
                 **9877 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   1.1   2.2e-10   4.9e-07       1      65 [.     211     269 ..     211     271 .. 0.88
   2 ?   -0.6   0.1       0.6   1.4e+03      49      63 ..     322     336 ..     313     338 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 2.2e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrie 65 
                 s+ +++ g+aHELrtPL  ++  +e+ ++   l+e   +    + + + +l++l+e+lL+++r++
  CTQ27962.1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSEN---LSEAESQ---ALNRDIGQLESLIEELLTYARLD 269
                 689***********************877...6666655...6778999**************98 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.6
                 HHHHHHHHHHHHHCC CS
       HisKA  49 rrldhlvedlLdlsr 63 
                 r ld+lv++ L++s+
  CTQ27962.1 322 RVLDNLVNNALRYSS 336
                 56899****999997 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         8   1.8e+04      16      24 ..      91      99 ..      90     100 .. 0.83
   2 !   25.2   0.0   6.8e-09   1.5e-05      12      52 ..     166     206 ..     158     207 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 8
                HHHHHTTTB CS
        HAMP 16 aarriaaGd 24
                ++++++aGd
  CTQ27962.1 91 SMQHLRAGD 99
                699999999 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 6.8e-09
                 HHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP  12 rLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 r+++aa+r ++G+l++r+  ++   + +L+ afN+M+d+++
  CTQ27962.1 166 RIETAAQRFGEGHLSERIHFDSMSSFERLGVAFNQMADNIN 206
                 899************************************97 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.6e-08    0.0001       4      85 ..     321     397 ..     317     401 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.6e-08
  HATPase_c_3   4 ekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknalr.latsskeakrkstslGkkGiGlklAslslg 85 
                  e +l  lv+N+l  ++++v +++  + g+ +++ +eDdG G+ +ee +++++ + + +++     + +G  G+G  lA++++ 
   CTQ27962.1 321 ERVLDNLVNNALRYSSQRVAVSLTLQ-GSRASLLVEDDGPGIAPEERERVFEpFVRLDPS---RDRATGGCGLG--LAIVHSI 397
                  788999************99999996.789*********************846677777...46777777777..7776655 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.6e-06    0.0036      44     111 ..     328     400 ..     300     411 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.6e-06
  HATPase_c_2  44 vehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep........keslkegGrGlalikglvDe 111
                  v+ a +  + ++v v+l+ ++ +  + v+D+Gpg  pe++++  e  p        +     +G+Gla++++++  
   CTQ27962.1 328 VNNALRYSS-QRVAVSLTLQGSRASLLVEDDGPGIAPEERERVFE--PfvrldpsrDRATGGCGLGLAIVHSIAQA 400
                  444444333.89**********************99998766544..45689999999999999******998865 PP

>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00011      0.25       3      32 ..     164     194 ..     162     196 .. 0.85
   2 ?   -0.1   0.0      0.43   9.7e+02      33      42 ..     393     402 ..     392     409 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHH-S.--EEE-----SHHHH CS
         R3H   3 llrvekklaefvkdt.grslefppmssyeRr 32 
                 +lr+e  +++f +   +++++f++mss+eR+
  CTQ27962.1 164 MLRIETAAQRFGEGHlSERIHFDSMSSFERL 194
                 678999999999665669************7 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.43
                 HHHHHHHHSS CS
         R3H  33 iiHelaeayg 42 
                 i+H +a+a+g
  CTQ27962.1 393 IVHSIAQAMG 402
                 8*******98 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00012      0.26       9      89 ..     319     409 ..     316     413 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
  HATPase_c_5   9 ilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg.....ek.......kklesskskkeehGiGlksireivkkykgnlsiea 89 
                  ++  +LdN ++ + + ++++  ++lt++   +   + +e    g     ++       +  +s+ + ++  G+Gl  +++i++  +g++++ea
   CTQ27962.1 319 LMERVLDNLVNNALRYSSQRVAVSLTLQ--GSRASLLVEDDGPGiapeeRErvfepfvRLDPSRDRATGGCGLGLAIVHSIAQAMGGEVRCEA 409
                  5666788888888888854444555555..55555555555444334431123333323344889999*********************9986 PP

>> Holin_BlyA  holin, BlyA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   2.3      0.42   9.4e+02      21      36 ..      10      25 ..       4      30 .. 0.85
   2 ?    8.1   0.0    0.0011       2.5      13      46 ..     131     167 ..     125     169 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.42
  Holin_BlyA 21 lgiFvvllvlgvllll 36
                l  Fv  lv+ +l+ l
  CTQ27962.1 10 LLLFVCFLVMTMLVGL 25
                568*********9865 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0011
  Holin_BlyA  13 ldeiKL..iilgiFvvl.lvlgvllllKPllkdiLil 46 
                 l e++L  ++l+ F+ + l ++v + ++P  +d+L +
  CTQ27962.1 131 LHEMRLldVALMAFIAIsLAFPVFIWMRPHWQDMLRI 167
                 66677644699****885889************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.36
# Mc/sec: 3641.87
//
Query:       CTQ27963.1  [L=120]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 1092.52
//
Query:       CTQ27964.1  [L=239]
Description: DNA-binding response regulator in two-component regulatory system with RstB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-21   75.1   0.2    7.1e-21   74.1   0.0    1.6  2  Trans_reg_C   Transcriptional regulatory protein, C terminal
    1.8e-20   73.2   0.0    2.6e-20   72.6   0.0    1.3  1  Response_reg  Response regulator receiver domain


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.71   6.4e+03      48      59 ..     107     118 ..     106     123 .. 0.73
   2 !   74.1   0.0   7.9e-25   7.1e-21       1      77 []     156     232 ..     156     232 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.71
                  HHHHHHHHHHHT CS
  Trans_reg_C  48 vhisrLRkkLed 59 
                  v  +rLR  L++
   CTQ27964.1 107 VLLARLRLHLRQ 118
                  567888888887 PP

  == domain 2  score: 74.1 bits;  conditional E-value: 7.9e-25
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ge+v+l++  f+lL+ L+ ++g+++ r+ Ll+++ g ++d+ dr+vdv+isrLRkkL d++ +p +I+tvr++GY +
   CTQ27964.1 156 GENVALSTADFDLLWELATHAGQIMDRDALLKNLRGVTYDGMDRSVDVAISRLRKKLLDNATEPYRIKTVRNKGYLF 232
                  6889***********************************************************************86 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0     3e-24   2.6e-20       1     111 [.       4     112 ..       4     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 3e-24
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   ++ v+Ddp v +l++ +l ++++ +v +   g+ a e + +ek+dl+llDi++pg dG++l++ +r +  + p+++lt+ +++ + +  l++ga+d+
    CTQ27964.1   4 IVFVEDDPEVGTLIAAYLGKHDM-DVVVEPRGDRAEEVIAREKPDLVLLDIMLPGKDGMTLCRDLRGQW-QGPIVLLTSLDSDMNHILSLEMGASDY 98 
                   678********************.99999**************************************99.*************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   + K   p+ Ll++l
    CTQ27964.1  99 ILKTTPPAVLLARL 112
                   *******9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 2167.51
//
Query:       CTQ27965.1  [L=111]
Description: conserved hypothetical protein; putative inner membrane protein associated with alginate biosynthesis [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-50  170.5   8.0    1.3e-50  170.3   8.0    1.0  1  GlpM      GlpM protein


Domain annotation for each model (and alignments):
>> GlpM  GlpM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.3   8.0     7e-55   1.3e-50       1     107 []       5     111 .]       5     111 .] 0.99

  Alignments for each domain:
  == domain 1  score: 170.3 bits;  conditional E-value: 7e-55
        GlpM   1 lkallGaavvlliallsksknyyiaGlvplfptfaliahyivgserslealrttilfglwsiipyavylaalyyfserlklelalalavvvwvlaaall 99 
                 +k llGa+vv+li++l+k+kny iaGlvplfptfaliahyiv+ser++ealr+ti+fg+wsi+py++yl++l+yf+ +++l+lala+av +w l+a+ll
  CTQ27965.1   5 IKGLLGALVVVLIGVLAKTKNYAIAGLVPLFPTFALIAHYIVASERGIEALRATIVFGMWSILPYFIYLLSLWYFTGIMRLPLALAGAVGCWGLCAWLL 103
                 799************************************************************************************************ PP

        GlpM 100 illwsklh 107
                 il+w ++h
  CTQ27965.1 104 ILGWGRFH 111
                 ****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 853.55
//
Query:       CTQ27966.1  [L=240]
Description: dihydrofolate reductase isozyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-25   89.9   0.0    2.2e-25   89.6   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.4e-22   80.1   0.0    1.7e-22   79.8   0.0    1.1  1  adh_short     short chain dehydrogenase
    0.00063   19.3   0.1        2.4    7.6   0.0    3.0  3  Epimerase     NAD dependent epimerase/dehydratase family
    0.00079   19.4   0.3     0.0029   17.5   0.3    1.8  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0     5e-29   2.2e-25       1     232 [.      13     236 ..      13     237 .. 0.90

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 5e-29
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdr 97 
                   Ga + IG a+A+++ ++   v+++++      +++ l e  ga  l++D ++++ + +++e+v++++++l  +++na    + ++p + +s   ++r
    CTQ27966.1  13 GAGRRIGLALAHHFLQQRQPVIVSYRTPYP--AIDGLRE-AGALCLQADFSSDDGILTFAEAVKSHTNGLRAIIHNASDWMA-EKPGVPLS-TVINR 104
                   77789**********************998..6888776.68889********************************98887.77877775.5799* PP

                   HHHHHTHHHHHHHHHHHHHCTSC....CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2  98 aldvnlyslfllakaalplmkeg....gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelle 190
                   ++++ +++ +ll +a++ l++ +    + i++++ +  er+ +++ ay+a+Kaal ++tr++A++l+p +++vNa++p++i  +  +     ++ ++
    CTQ27966.1 105 MMQIHVHAPYLLNHALEALLRGHghaaSDIIHITDYVVERGSDKHIAYAASKAALDNMTRSFARKLAP-EVKVNAIAPSLIMFNEGD----DEAYRQ 196
                   *************9999988766587778***************************************.9***********966543....466777 PP

                   HHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 191 elearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   ++ +++ ++ +   +e+ +++ +L+   ++y+tG  ++vDgG
    CTQ27966.1 197 QALDKSLMKIAPGEKEISDLIDYLFT--SRYVTGRSFAVDGG 236
                   777888888888889**********8..78***********9 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   3.8e-26   1.7e-22       3     182 ..       9     184 ..       7     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 3.8e-26
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH. CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee. 100
                 +l+tGa++ IG+a+a++++++   v+v  r++ ++   ++ l+e+g  al++q+D ++ + + ++ e++++++ +l ++++NA+  ++++   +  ++ 
  CTQ27966.1   9 ILITGAGRRIGLALAHHFLQQRQPVIVSYRTPYPA---IDGLREAG--ALCLQADFSSDDGILTFAEAVKSHTNGLRAIIHNASD-WMAEKPGVPLSTv 101
                 89*************************99999999...55555543..89**********************************9.8888888999998 PP

                 HHHHHHHHTHHHHHHHHHHHHHHH..HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB CS
   adh_short 101 wervievNltgvflltravlpaml..kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlv 182
                 ++r++++ +++++ll +a+   +    + + +I+ ++  + + ++   +aY+AsKaa++ +trs+a+ lap+ ++vna+aP l+
  CTQ27966.1 102 INRMMQIHVHAPYLLNHALEALLRghGHAASDIIHITDYVVERGSDKHIAYAASKAALDNMTRSFARKLAPE-VKVNAIAPSLI 184
                 *************9988865555587777889***************************************8.********987 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00053       2.4       1      33 [.       9      41 ..       9      71 .. 0.87
   2 !    3.4   0.0      0.01        45     159     219 ..      76     141 ..      65     142 .. 0.67
   3 !    5.1   0.0     0.003        14     141     159 ..     151     169 ..     146     213 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00053
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-ST CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlss 33
                il+tGa   iG al++++l++ + vi+  r ++
  CTQ27966.1  9 ILITGAGRRIGLALAHHFLQQRQPVIVSYRTPY 41
                8**********************9999888765 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.01
                 HHT-EEEEEEESEEESTTS-TTS.TTSHHHHHHHHHHT........TSSSEEEETTST-EEEEEEHHHHH CS
   Epimerase 159 qyglnaiilrlfnlyGprngege.vsrvipalirkile........gkqevtllgdgtalRdflyveDva 219
                 ++gl+aii + + ++ +   +g   s vi +++ +i+         +  e +l g g a  d +++ D++
  CTQ27966.1  76 TNGLRAIIHNASDWMAEK--PGVpLSTVINRMM-QIHVhapyllnhA-LEALLRGHGHAASDIIHITDYV 141
                 568888888888888888..4443444444443.3444344444332.399999**************98 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.003
                 HHHHHHHHHHHHHHHHHHH CS
   Epimerase 141 pYaaaKlageklveayaaq 159
                 +Yaa+K+a +++++++a++
  CTQ27966.1 151 AYAASKAALDNMTRSFARK 169
                 7***************987 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.3   6.5e-07    0.0029       4     173 ..      10     176 ..       8     181 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6.5e-07
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 litG+   +Gl+la++ +++ +   v++s +   ++     i+ l++ ga   +++aD s+ d + +  e++k++++ ++ +ih A   + ++     +
  CTQ27966.1  10 LITGAGRRIGLALAHHFLQQRQP--VIVSYR---TP--YPAIDGLREAGA--LCLQADFSSDDGILTFAEAVKSHTNGLRAIIHNASDWMAEKPGVPLS 99 
                 9*****************98554..445555...12..345899999776..689*******************************9888777777777 PP

                 HHHHHHHTTTTHHHHHHHHHTTT......S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHTEEEE CS
          KR 103 edleqvlapKvkGawnLhelled......esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglpavsi 173
                   ++++++  v++   L+++le       +    ++ ++      gs ++ +Yaa  a lD + ++ +++ +p v +
  CTQ27966.1 100 TVINRMMQIHVHAPYLLNHALEAllrghgHAASDIIHITDYVVERGSDKHIAYAASKAALDNMTRSFARKLAPEVKV 176
                 78888888888888888888887666666555556666666777889999999999999998888887777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1797.52
//
Query:       CTQ27967.1  [L=460]
Description: putative arginine/ornithine antiporter transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-74  248.8  33.9      1e-73  248.6  33.9    1.1  1  AA_permease_2   Amino acid permease
    1.3e-13   50.4  35.6    4.6e-13   48.6  35.5    1.9  1  AA_permease     Amino acid permease
    5.1e-08   32.1   8.1    9.7e-08   31.2   8.1    1.4  1  Spore_permease  Spore germination protein
  ------ inclusion threshold ------
        1.2    8.9   0.0        1.2    8.9   0.0    4.2  4  FixS            Cytochrome oxidase maturation protein cbb3-ty


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.6  33.9   2.3e-77     1e-73       1     400 [.       5     414 ..       5     446 .. 0.91

  Alignments for each domain:
  == domain 1  score: 248.6 bits;  conditional E-value: 2.3e-77
  AA_permease_2   1 lsllsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssa.lprsgGiyvytkaafgkkvaflsawfnwfayvpvla 93 
                    l+l +++alv++s++g+g+f  +  +aa + p+++l++w ++++g+l ++++++ l+   +  +gGi++y++++fg++++f+saw +w+++v++++
     CTQ27967.1   5 LGLSALTALVLSSMLGAGVFSLPqnMAAVASPSALLIGWAITGVGILFLAFAMLLLTRIrPDLDGGIFTYAREGFGELIGFCSAWGYWLCAVIANV 100
                    68899***********99999989766667777777777777777778999999999999************************************ PP

  AA_permease_2  94 silsvaasyllnalgp.....dlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffp 184
                    s+l++++s+l ++++      +++gntw++++ a+++l++v+++ +rg+++ a i+ + +++k+ lpl  +++l+ ++++ ++f    + +     
     CTQ27967.1 101 SYLVIVFSALSFFTDTpelrlFGDGNTWQSIVGASVLLWVVHFLVLRGVQTAAGINLVATLAKL-LPLGAFVALAALAFQLDTFRLD-FSGLALGV 194
                    *************996699999999***************************************.7******************854.33335667 PP

  AA_permease_2 185 ngwpgvllgllivlwsfdGfesaanvseevkk.kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvil 279
                     +w +v +++li+lw+f+G+e+a++vs ++++ +dv +a+ +++l +l +yllv++++lgvvp +e+a+ +n +s+a+l+++ +g ++++i+++++
     CTQ27967.1 195 PVWEQVKNTMLITLWVFIGVEGAVVVSARARHkRDVGRATLLAVLSALAVYLLVTLLSLGVVPRSELAEMRN-PSMAGLMVRLMG-SWGEIVIAAG 288
                    7****************************998789*************************************.99********99.********** PP

  AA_permease_2 280 ialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkk 375
                    +++s++ga ++++i++++v + +a+++++Pr fa++n +++p+++++lt+i +++ l+l++l+ +++y +ll+++s +++++yll+ + +l++  +
     CTQ27967.1 289 LIVSVCGAYLSWTIMAAEVPFLAATHKAFPRLFARQNSNNAPSASLWLTNISVQVSLVLIWLT-GSDYGTLLTIASEMILVPYLLVGAFLLKIATR 383
                    *************************************************************96.8****************************999 PP

  AA_permease_2 376 rphlkr......pgkilvaiigalfllfllv 400
                    + h+        +g++l+++ g + ll+ +v
     CTQ27967.1 384 PLHKAVaigaciYGIWLLYASGPVHLLLSVV 414
                    9998446666887778888877444444443 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6  35.5     1e-16   4.6e-13       7     358 ..      15     351 ..      10     420 .. 0.84

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 1e-16
  AA_permease   7 lggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp.ksggfytyasrflgpelGfviGlnylfswitvlaleltaasiliqf 103
                  l ++ G+g+f    + ++ a+p ++l++++++gv i++ + ++  +  + p   gg+ tya++  g+  Gf  ++ y+++ +   ++ +  ++i+++ 
   CTQ27967.1  15 LSSMLGAGVFSLPQNMAAVASPSALLIGWAITGVGILFLAFAMLLLTRIRPdLDGGIFTYAREGFGELIGFCSAWGYWLCAV---IANVSYLVIVFSA 109
                  778999**********************************************************************777655...5556778888888 PP

  AA_permease 104 welvtdlpkawvt...........gavflvvlliinlvgvkvygeaefilalikiiaiiafiivg.iillaggkpnkgagfrflgdngsifknnlppg 189
                  ++++td p++  +           ++v+l v+ ++ l gv   + + ++++l k++ + af+ +    +  +  + +        ++g  +   + ++
   CTQ27967.1 110 LSFFTDTPELRLFgdgntwqsivgASVLLWVVHFLVLRGVQTAAGINLVATLAKLLPLGAFVALAaLAFQLDTFRLD--------FSGLALGVPVWEQ 199
                  8888****99999***********99***************************************433333333333........3444333444444 PP

  AA_permease 190 fakeeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsv 287
                          +kn +    i +  f G e  ++++++++  ++++ +a+l +v+  + +Y+l++ll   +vpr+ l  +       + +   ++ ++ s 
   CTQ27967.1 200 --------VKNTM---LITLWVFIGVEGAVVVSARARH-KRDVGRATLLAVLSALAVYLLVTLLSLGVVPRSELAEMR-----NPSMAGLMVRLMGSW 280
                  ........55555...5555556666666666776654.899*******************************99998.....458889999999*** PP

  AA_permease 288 laplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllasln 358
                     +i+a++++++ ++++s ++ a  v +  a  +++P+ +++ + ++ P +++ l+ i ++++l+l  l+
   CTQ27967.1 281 GEIVIAAGLIVSVCGAYLSWTIMAAEVPFLAATHKAFPRLFARQNSNNAPSASLWLTNISVQVSLVLIWLT 351
                  ***************************************************************99764443 PP

>> Spore_permease  Spore germination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   8.1   2.2e-11   9.7e-08       5     234 ..       8     256 ..       4     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 2.2e-11
  Spore_permease   5 kqlfvlivsfqlGvgiltlprsvaeqatpdg.Wisvllagiiililvllmlkllkkfp..ektliellkkilgkwLG.......sllsilfilyF 89 
                     + l+ l+ s +lG+g+ +lp+ +a+ a+p++  i+  ++g+ il+l+  ml l    p  +  ++ + ++++g ++G       +l  ++  + +
      CTQ27967.1   8 SALTALVLSSMLGAGVFSLPQNMAAVASPSAlLIGWAITGVGILFLAFAMLLLTRIRPdlDGGIFTYAREGFGELIGfcsawgyWLCAVIANVSY 102
                     56789**********************888633566677777777777777777766622688*************944444433444555678* PP

  Spore_permease  90 lllaafelRefseliqvflledtplwiiil...llllvilYlvvkGieslar.....eflfiivilliilllillfslklaeiknlrPvlgngik 176
                     l+++++ l  f++  ++ l+ d  +w+ i+   +ll+v+ +lv  G+++ a       ++ +++   ++ l+ l f l+++ +++    lg  + 
      CTQ27967.1 103 LVIVFSALSFFTDTPELRLFGDGNTWQSIVgasVLLWVVHFLVLRGVQTAAGinlvaTLAKLLPLGAFVALAALAFQLDTFRLDFSGLALGVPVW 197
                     ********************999999866544489***********99988755444666677888889999999******99999999999999 PP

  Spore_permease 177 pvlks.lkttslsflgveillllvpflkdkkkvkkaallgvlistllyllttlivilvl 234
                     +++k+ +  t+  f+gve ++++  + + k +v +a+ll+vl    +yll+tl+ ++v 
      CTQ27967.1 198 EQVKNtMLITLWVFIGVEGAVVVSARARHKRDVGRATLLAVLSALAVYLLVTLLSLGVV 256
                     9999956666678*****************************************99875 PP

>> FixS  Cytochrome oxidase maturation protein cbb3-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.1   4.3         4   1.8e+04       5      21 ..      39      55 ..      38      59 .. 0.58
   2 ?   -0.4   0.8      0.21   9.4e+02       3      19 ..     161     177 ..     160     180 .. 0.83
   3 ?   -4.7   0.8         4   1.8e+04       9      23 ..     286     300 ..     284     302 .. 0.57
   4 ?    8.9   0.0   0.00027       1.2       7      31 ..     409     433 ..     407     435 .. 0.94

  Alignments for each domain:
  == domain 1  score: -6.1 bits;  conditional E-value: 4
        FixS  5 lLiplSlllgllalaaF 21
                lLi+ ++  +++ ++aF
  CTQ27967.1 39 LLIGWAITGVGILFLAF 55
                56666665555555555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.21
        FixS   3 LylLiplSlllgllala 19 
                 L+ L+pl  +++l+ala
  CTQ27967.1 161 LAKLLPLGAFVALAALA 177
                 56699999999999997 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 4
        FixS   9 lSlllgllalaaFlW 23 
                 ++ l++ ++ a + W
  CTQ27967.1 286 AAGLIVSVCGAYLSW 300
                 455566666666666 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.00027
        FixS   7 iplSlllgllalaaFlWavksGQFD 31 
                 + lS++l + +l++Fl+a ++ Q D
  CTQ27967.1 409 LLLSVVLYAPGLLVFLYARRTHQHD 433
                 579********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3431.32
//
Query:       CTQ27968.1  [L=316]
Description: hypothetical protein CH1034_200009 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-58  194.0  10.4    1.3e-19   69.9   0.2    3.5  3  DUF1471   Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.2   7.1e-24   1.3e-19       1      56 []      34      90 ..      34      90 .. 0.99
   2 !   60.4   0.6   6.7e-21   1.2e-16       2      56 .]     119     174 ..     118     174 .. 0.98
   3 !   69.0   0.4   1.4e-23   2.4e-19       1      56 []     261     316 .]     261     316 .] 0.98

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 7.1e-24
                EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC...CTTEEEEEEEEE CS
     DUF1471  1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsare.nnggnlhatAelYK 56
                l+p++++ v+g+f+++ d+ +a+s+kAd+ GA++++++++++ +nggn+++tA+lYK
  CTQ27968.1 34 LKPYDRVVVTGRFNAIGDAVQAVSRKADKDGAASFYVVDTSDyGNGGNWRVTADLYK 90
                79******************************************************9 PP

  == domain 2  score: 60.4 bits;  conditional E-value: 6.7e-21
                 EEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC...CTTEEEEEEEEE CS
     DUF1471   2 qpigtisvsgvfgspsdledalskkAdekGAkyYrItsare.nnggnlhatAelYK 56 
                  p++t++v+g + s+++++da+ k+A++kGA+++ I+++ + n+ggn+++tA++YK
  CTQ27968.1 119 MPYDTVTVQGFYRSQPEVNDAITKAAKAKGAYAFFIVRQVDaNQGGNQRITAYIYK 174
                 599****************************************************9 PP

  == domain 3  score: 69.0 bits;  conditional E-value: 1.4e-23
                 EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEEEE CS
     DUF1471   1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAelYK 56 
                 + p+++i ++g++g++++++++ +k+A++kGAkyY+It++++++ggn++++A+lYK
  CTQ27968.1 261 MVPFDNIQFTGNYGNMTEISYQTAKRAAKKGAKYYHITRQWQERGGNITISADLYK 316
                 679****************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2645.50
//
Query:       CTQ27969.1  [L=60]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 484.72
//
Query:       CTQ27970.1  [L=509]
Description: pyridine nucleotide transhydrogenase, alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-76  253.9   2.1    1.3e-75  253.4   2.1    1.2  1  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain
    4.2e-51  172.8   0.1    8.8e-51  171.8   0.1    1.6  1  AlaDh_PNT_N   Alanine dehydrogenase/PNT, N-terminal domain
    1.7e-36  124.5   7.8    5.7e-36  122.8   7.8    1.9  1  PNTB_4TM      4TM region of pyridine nucleotide transhydrogen
    0.00019   20.8   0.4      0.042   13.2   0.1    2.8  2  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
  ------ inclusion threshold ------
      0.011   14.9   0.7      0.022   14.0   0.7    1.5  1  Pyr_redox_2   Pyridine nucleotide-disulphide oxidoreductase
      0.025   14.8   2.9      0.069   13.4   2.9    1.7  1  DUF3392       Protein of unknown function (DUF3392)
      0.064   13.8   0.3       0.31   11.6   0.3    2.2  2  Pyr_redox     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.4   2.1   4.9e-79   1.3e-75       1     213 [.     141     368 ..     141     369 .. 0.98

  Alignments for each domain:
  == domain 1  score: 253.4 bits;  conditional E-value: 4.9e-79
                  HHHHHHHHCSCGCTSEEETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEE....................H CS
  AlaDh_PNT_C   1 AvleaakalekffggkgtlaGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvev....................l 78 
                  A++eaa+++ +ff+g++t+aG+vp   pakv+viG+GvaGl+Ai +a++lga+V+++D+rp+++eq++s+ga+f+e+                    +
   CTQ27970.1 141 AIVEAAHEFGRFFTGQITAAGKVP---PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELdfkeeagsgdgyakvmseafI 235
                  899*********************...*********************************************************************** PP

                  CHHHHHHHHHHHH-SEEEE---BTTSS---SC-HHHHHTS-TTEEEEETTGGGT-SBTT--TBBTTSEEEEETTEEEEEBSTGGGGSHHHHHHHHHHH CS
  AlaDh_PNT_C  79 ksqeellaeavkeadvvigtvlipGkkaPkLvteemvksMkpgsVivDvAidqGGnvetsrltthgepvveekgvvhygvanlpgavprtasalltnn 176
                  k++++l+a ++ke+d++++t+lipGk+aPkL+t+emv+sMk+gsV+vD+A ++GGn+e   +t +ge v++ +gv+++g+++lpg++p+++s+l+ +n
   CTQ27970.1 236 KAEMALFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKSGSVVVDLASQNGGNCE---YTVPGEVVTTANGVKIIGYTDLPGRLPTQSSQLYGTN 330
                  **********************************************************...************************************* PP

                  HHHHHHHHC..HHHTCCHHHCTSHHHHCCEEEETTEESS CS
  AlaDh_PNT_C 177 tlpyleell..adkglkkalkedealrkglvvkkGkvtn 213
                  ++++l+ l+  +d+++  ++ +d ++r+++vv++G++t+
   CTQ27970.1 331 LVNLLKLLCkeKDGNI-VIDFDDVVVRGVTVVREGEITW 368
                  *********7666677.999*****************98 PP

>> AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.8   0.1   3.4e-54   8.8e-51       1     136 []       4     137 ..       4     137 .. 0.99

  Alignments for each domain:
  == domain 1  score: 171.8 bits;  conditional E-value: 3.4e-54
                  EE---SSTT----SS-HHHHHHHHHTT-EEEEETTTTGGGTC-HHHHHHTTEEEESCHHHHCTTSSEEEESS--.CHCGGGS-TTCEEEEE--GGCHH CS
  AlaDh_PNT_N   1 gvpkEikagErRvaltPatvkkLvkaGhevlVesgaGegagfsdeeYeeaGaeivesaeevlaeadlilkVkepseeelellkegqtlisflhlaanp 98 
                  gvp+E+ a+E+R+a+tP+tv++L+k+G++v VesgaG+ a+f+de+++eaGaeiv+ + ev++ +d+ilkV++p+++e++ll++g+tlisf+++a+np
   CTQ27970.1   4 GVPQERLAQETRAAATPKTVEQLLKLGFSVAVESGAGKLASFDDEAFAEAGAEIVTGD-EVWQ-SDVILKVNAPNDDEIALLNPGTTLISFIWPAQNP 99 
                  79*****************************************************988.****.********************************** PP

                  HHHHHHHHCTEEEEEGGG-BSSGCCGGGTHHHHHHHHH CS
  AlaDh_PNT_N  99 ellealaekgvtaialElvprisraqsldaLssmaeia 136
                  +l+e+la+++++++a++ vprisraqsldaLssma+ia
   CTQ27970.1 100 QLMEKLAARNINVMAMDSVPRISRAQSLDALSSMANIA 137
                  ************************************98 PP

>> PNTB_4TM  4TM region of pyridine nucleotide transhydrogenase, mitoch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   7.8   2.2e-39   5.7e-36       1      82 []     426     508 ..     426     508 .. 0.97

  Alignments for each domain:
  == domain 1  score: 122.8 bits;  conditional E-value: 2.2e-39
    PNTB_4TM   1 altvfvLalfvGyeviwkVtpaLhtPLmsvtnaisgiiivgallalg.stlakvlgaiavvlasinvvGGFlvtqrmLkmFkk 82 
                 ++tvf+La++vGy+v+w+V++aLhtPLmsvtnaisgii+vgall++g   ++++l++iav++asin++GGF+vtqrmLkmF+k
  CTQ27970.1 426 HFTVFALACVVGYYVVWNVSHALHTPLMSVTNAISGIIVVGALLQIGhGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFRK 508
                 589********************************************877899****************************97 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   1.6e-05     0.042      33      86 ..     162     215 ..     129     218 .. 0.82
   2 !    4.7   0.0    0.0067        17      78     127 ..     235     285 ..     224     288 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
                   -GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHH CS
  2-Hacid_dh_C  33 elsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsle 86 
                   ++   +v +iG+G  G a++  ++++g+ v a+d++++ +e+++++g+e+ +l+
    CTQ27970.1 162 KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELD 215
                   56678999******************************9999999999999886 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0067
                   HTCEECSHHHHHHH-SEEEE-S-.-STTTTTSBSHHHHHCSTTTEEEEESS CS
  2-Hacid_dh_C  78 lgvelvsleellaesDivslhlp.ltpetrhlinaeelakmkkgailiNta 127
                    ++e++ + +  +e Di++ ++    +   +li++e+ ++mk+g++++  a
    CTQ27970.1 235 IKAEMALFAAQAKEVDIIVTTALiPGKPAPKLITREMVDSMKSGSVVVDLA 285
                   5566677777888999988765414566789****************9876 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.7   8.5e-06     0.022     141     192 ..     164     215 ..     103     221 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.5e-06
                  -TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 141 lpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaaleea 192
                   p++++v+G+G+ G+   +a+++lg+ v   + r+++ ++++++ +++le  
   CTQ27970.1 164 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELD 215
                  4477777777777777777777777777777777777766666666666655 PP

>> DUF3392  Protein of unknown function (DUF3392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.9   2.7e-05     0.069      42      99 ..     416     472 ..     401     475 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.7e-05
     DUF3392  42 rllsslkfvlrvlvfvllcafGyGllivlltPllakaLaqleslllalvvllvflliG 99 
                 + +++++f+   +vf l c++Gy  ++  ++  l++ L+++++ + +++v+ ++l iG
  CTQ27970.1 416 ANVAPKEFLGHFTVFALACVVGYY-VVWNVSHALHTPLMSVTNAISGIIVVGALLQIG 472
                 4588999999*************5.56678999************************9 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.9   1.3e+04      46      63 ..     101     118 ..      99     126 .. 0.74
   2 ?   11.6   0.3   0.00012      0.31       1      47 [.     167     213 ..     167     221 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.9
                 HHHHHHHTTEEEECSEEE CS
   Pyr_redox  46 lqeklekngievllntkv 63 
                 l+ekl +++i+v+   +v
  CTQ27970.1 101 LMEKLAARNINVMAMDSV 118
                 688999999999866655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00012
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHH CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilq 47 
                 kv+v+G+G+ gl + ga++ lg+ V  ++ ++++  +   + ++ l+
  CTQ27970.1 167 KVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLE 213
                 799******************************99776666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3792.50
//
Query:       CTQ27971.1  [L=462]
Description: pyridine nucleotide transhydrogenase, beta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.6e-205  681.4  19.3   7.4e-205  681.2  19.3    1.0  1  PNTB             NAD(P) transhydrogenase beta subunit
  ------ inclusion threshold ------
      0.014   15.1   1.0      0.084   12.6   0.1    2.7  3  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai
      0.024   14.2   0.0      0.055   13.1   0.0    1.6  2  AA_kinase        Amino acid kinase family
          4    6.1   9.1       0.31    9.8   2.8    2.0  2  O-antigen_lig    O-antigen ligase like membrane protein
        6.4    5.3  22.9       0.31    9.6   7.6    2.5  2  OPT              OPT oligopeptide transporter protein
        9.5    6.0  11.6       0.11   12.2   0.6    3.1  3  Phage_holin_2_4  Bacteriophage holin family, superfamily II-l


Domain annotation for each model (and alignments):
>> PNTB  NAD(P) transhydrogenase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  681.2  19.3  2.5e-208  7.4e-205       2     459 ..       7     460 ..       6     461 .. 0.95

  Alignments for each domain:
  == domain 1  score: 681.2 bits;  conditional E-value: 2.5e-208
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        PNTB   2 elaylvaallfilglkglsspktarrgnllgavgmllavvatlllllkeaaseelalillalvigaviGlllakkvemtemPqlvallnslvGlAavlv 100
                 ++ay+vaa+lfi++l+gls+++t+++gn++g++gm++a++at  +l  +a   ++ +i+la+vig++iG+ lakkvemtemP+lva+l+s+vGlAavlv
  CTQ27971.1   7 TAAYIVAAILFIFSLAGLSKHETSQQGNYFGIAGMAIALIAT--ILGPDA--GNVGWIILAMVIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLV 101
                 689***************************************..555555..4589******************************************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..X.............XXXXXXXX CS
        PNTB 101 alaelleeeaekaeealeavelvelvlgvliGavtftGslvAflKLqgllsskplklpgrkllnlllllalvvllvlfvla....asslllllllvlal 195
                 +++++l++e+   e+ l +++l+e++lg++iGavtftGs+vAf+KL+g++ss+pl+lp+r+ lnl++l+++++l+v+fv +    ++ l+ll+++++al
  CTQ27971.1 102 GFNSYLQHETGM-EQILVNIHLTEVFLGIFIGAVTFTGSVVAFGKLRGKISSRPLMLPNRHKLNLAALVVSFILMVIFVRSdstgTQVLCLLVMTAIAL 199
                 ********8866.668999**********************************************************99988876666666999***** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....X--S-EES CS
        PNTB 196 llGvllvlpiggaDmpvvisllnsysGlaaaaaGfvlenklLiivGalvgasGaiLsyimckamNrsllnvllggfgaaassekaeeeekeekevkeis 294
                 ++G++lv++iggaDmpvv+s+lnsysG+aaaaaGf+l+n+lLi++Galvg+sGaiLsyimckamNrs+++v++ggfg++ ss++ +e   e  e++eis
  CTQ27971.1 200 AFGWHLVASIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFGTDGSSSGGDE---EVGEHREIS 295
                 ****************************************************************************65555544444...4459***** PP

                 HHHHHHHHHC-SEEEEEE-HHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSSTTHHHHHHHHCT--GGGEEEHHHHCCGGGG-SEEEEES-SCCC CS
        PNTB 295 aedvaellkeakkviivPGYGlavaqAqhavaelaklLeekgveVkfaiHPvAGRmPGhmnVLLAeadvpydkvlemdeineefaetDvalViGAnDvv 393
                 ae++ae+lk++++vii+PGYG+avaqAq+ vae++++L+++g++V+f+iHPvAGR+PGhmnVLLAea+vpyd+vlemdein++f++tD +lViGAnD+v
  CTQ27971.1 296 AEETAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGIKVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFSDTDTVLVIGANDTV 394
                 *************************************************************************************************** PP

                 -CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTT--S-GGGGSTTEEEEES-HHHHHHHHHH CS
        PNTB 394 npaakedpnspiagmPvlevekakkvivlkrslasGYagveNplFykentsmlfgdakksleellk 459
                 npaa++dp+spiagmPvlev+ka++v+v+krs+++GYagv+NplF+kent+mlfgdak+s++++lk
  CTQ27971.1 395 NPAAQDDPKSPIAGMPVLEVWKAQNVVVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAILK 460
                 ***************************************************************987 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.4   4.1e+03      68      86 ..     228     246 ..     212     253 .. 0.72
   2 ?   12.6   0.1   2.8e-05     0.084       2      87 ..     297     391 ..     296     414 .. 0.86
   3 ?   -2.0   0.0      0.91   2.7e+03      39      66 ..     408     435 ..     405     450 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.4
                   CHHHHHHHHH-SEEEEES- CS
  TPP_enzyme_M  68 skaanealeeaDlvlalGa 86 
                   ++aa   + + Dl+++ Ga
    CTQ27971.1 228 AAAAAGFMLSNDLLIVTGA 246
                   4566667788899999997 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.8e-05
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGS.........CHHHHHHHHH-SEEEEES-S CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhg.........skaanealeeaDlvlalGar 87 
                   e+ ae+lk++  ++i  G g+a ++a+  ++e  ekl++  +    g   +  + p ++ +l   +          ++ n+ + ++D+vl++Ga+
    CTQ27971.1 297 EETAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGIKVRFGIHPVAGRLPGHMNVLLAEAkvpydivleMDEINDDFSDTDTVLVIGAN 391
                   689******************************************9*9999999999988666555689999999999***************76 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.91
                   T-EEEEEGGGTTSS-TTSTTEEEESGGG CS
  TPP_enzyme_M  39 giPvvttlmgkgvipedhplylgmlglh 66 
                   g+Pv++ ++++ v+  +   + g++g+ 
    CTQ27971.1 408 GMPVLEVWKAQNVVVFKRSMNTGYAGVQ 435
                   6888888888888888888888888865 PP

>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.8e-05     0.055      45     150 ..     215     318 ..     183     332 .. 0.77
   2 ?   -3.8   0.0       2.6   7.9e+03      35      52 ..     382     399 ..     373     409 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHGEEEE-GGGTCEECCCE.....HHHTTTCEEECCHHHHHHHTT-E CS
   AA_kinase  45 sftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglpavglsaaaldateagr...degsdgnvesvdaeaieelleagvv 140
                 +++  +l+ +sg+ +  +       l   + ++t ++++s g  ++++++ ++++   +s+ a +  ++g     ++++g++++++ae+ +e+l++ + 
  CTQ27971.1 215 PVVVSMLNSYSGWAAAAAG----FMLSNDLLIVTGALVGSSGA-ILSYIMCKAMNRSFISVIAGGFGTDGSssgGDEEVGEHREISAEETAEMLKNSHS 308
                 5555555555666666665....55555566666688888888.8999999999***********999999***9*********************966 PP

                 EEEESEEEEE CS
   AA_kinase 141 pvltgfigld 150
                 +++t+++g+ 
  CTQ27971.1 309 VIITPGYGMA 318
                 6665555554 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.6
                 TEEEEEE--HHHHHHHHH CS
   AA_kinase  35 nklvvVhGggsftdglla 52 
                  + v+V+G++ +++  ++
  CTQ27971.1 382 TDTVLVIGANDTVNPAAQ 399
                 566888888888877665 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.8    0.0001      0.31     166     278 ..       5     115 ..       2     124 .. 0.75
   2 ?   -0.3   0.4      0.12   3.4e+02     247     258 ..     168     179 ..     155     263 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0001
  O-antigen_lig 166 wfysaNelssilllllpivllyllkkkksikfiiillllillllllGTKvalfGliiiliialillliklilkkkklkkkklllaiillvligill 261
                    +  +a  +++il+++    l    ++++  +f i  + ++l+ ++lG   + +G+ii+++++  ++ i+l  k +  ++ +l  + il  ++g+++
     CTQ27971.1   5 LVTAAYIVAAILFIFSLAGLSKHETSQQGNYFGIAGMAIALIATILGPDAGNVGWIILAMVIGGAIGIRLAKKVEMTEMPEL--VAILHSFVGLAA 98 
                    55566666667766666666444444444****************************************6555555566666..555666678888 PP

  O-antigen_lig 262 aiypyspiyrrkelkek 278
                    ++ +++   +++ ++e+
     CTQ27971.1  99 VLVGFNSYLQHETGMEQ 115
                    89999888887777664 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.12
  O-antigen_lig 247 lllaiillvlig 258
                    l++++il+v+++
     CTQ27971.1 168 LVVSFILMVIFV 179
                    222222222222 PP

>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   5.1    0.0096        29     351     426 ..      59     142 ..      50     144 .. 0.83
   2 ?    9.6   7.6    0.0001      0.31     353     422 ..     165     238 ..     160     284 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0096
         OPT 351 wylallvlslvigiivvealf.tqlpvwglll..alllafllaivsaiiaGltgl.....npvsgigkltqlifgallpgrpva 426
                 w+++ +v+  +igi + ++++ t++p ++ +l  +++la++l+ ++++++ +tg+     n++ +   l ++i ++ + g++va
  CTQ27971.1  59 WIILAMVIGGAIGIRLAKKVEmTEMPELVAILhsFVGLAAVLVGFNSYLQHETGMeqilvNIHLTEVFLGIFIGAVTFTGSVVA 142
                 999999999***********99****997777447899*****************76655555555555558888888888876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0001
         OPT 353 lallvlslvigiivvealftqlpvwglllalllafllaivsaiiaGltglnpvsgigkltq....lifgallpg 422
                 la lv+s+++++i+v    t+++v++ll+++++a+++    +  +G  ++ +v+++          ++g++l+ 
  CTQ27971.1 165 LAALVVSFILMVIFVRSDSTGTQVLCLLVMTAIALAFGWHLVASIGGADMPVVVSMLNSYSgwaaAAAGFMLSN 238
                 7889**********************************************666666555554555555555555 PP

>> Phage_holin_2_4  Bacteriophage holin family, superfamily II-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.5      0.38   1.1e+03      33      47 ..      34      48 ..      30      51 .. 0.81
   2 ?   -2.7   0.0       1.7     5e+03      36      46 ..      92     102 ..      80     106 .. 0.58
   3 ?   12.2   0.6   3.8e-05      0.11      17      59 ..     223     265 ..     213     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.38
  Phage_holin_2_4 33 elialvGlavAliGl 47
                     +  ++ G+a+Ali  
       CTQ27971.1 34 NYFGIAGMAIALIAT 48
                     567999*****9965 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.7
  Phage_holin_2_4  36 alvGlavAliG 46 
                      ++vGla  l+G
       CTQ27971.1  92 SFVGLAAVLVG 102
                      34555555555 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 3.8e-05
  Phage_holin_2_4  17 tggGavvsfaGflasselialvGlavAliGlLvnWyYkreanR 59 
                      ++ G   + aGf++s++l+ + G++v   G+++++   ++ nR
       CTQ27971.1 223 SYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNR 265
                      7889999************************999988888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3591.00
//
Query:       CTQ27972.1  [L=73]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-43  144.8   1.6    6.8e-43  144.7   1.6    1.0  1  YdiH      Domain of unknown function


Domain annotation for each model (and alignments):
>> YdiH  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.7   1.6   3.8e-47   6.8e-43       1      62 []      12      73 .]      12      73 .] 1.00

  Alignments for each domain:
  == domain 1  score: 144.7 bits;  conditional E-value: 3.8e-47
        YdiH  1 mdteldPtqlaieflrrdqsvlsPaqylkklkllelefadllalsslelkeeidlaWrlGvh 62
                mdtel+Ptq+aieflrrd++v++Paqylkklkllelefadl+alsslelkeeidlaWrlG+h
  CTQ27972.1 12 MDTELTPTQMAIEFLRRDPTVMTPAQYLKKLKLLELEFADLMALSSLELKEEIDLAWRLGIH 73
                9************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 639.22
//
Query:       CTQ27973.1  [L=316]
Description: stress-induced protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-36  123.6   0.0    3.3e-19   69.8   0.0    2.1  2  Usp       Universal stress protein family


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   1.9e-23   3.3e-19       2     141 .]       4     146 ..       3     146 .. 0.98
   2 !   52.0   0.1   5.9e-18   1.1e-13      16     141 .]     174     300 ..     157     300 .. 0.78

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 1.9e-23
                 -SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH...HHHHHHCTTCEEEEEEEESSHHHHHHH CS
         Usp   2 ykrIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada...akaaaeaggvkvevvveegdpaeeile 97 
                 y+ +lV++D +++ + Al++A+ l ++ g+++ +   i +++++++  + ++++++  +   a++ a     ak  +e g+++ + vv++  p e+i++
  CTQ27973.1   4 YQSMLVVIDPNQDDQPALRRAVYLHQRIGGRIKAFLPIYDFSYEMTTLLSPDERTAMRQGVIAQRTAWIreqAKFYLESGVPIDVKVVWHNRPFEAIIQ 102
                 899************************************************************9998889*9*************************** PP

                 HHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp  98 vaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 ++ +e+ dl++  ++++++l+ +++  + + +lr++pcpV++V+
  CTQ27973.1 103 EVVSEKHDLLLKMAHQHDKLEAVIFTPTDWHLLRKCPCPVWMVK 146
                 *******************************************8 PP

  == domain 2  score: 52.0 bits;  conditional E-value: 5.9e-18
                 HHHHHHHHHHHHH.CTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHHTTSSEEEEESCC CS
         Usp  16 kkAlewAlelaka.rgaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaeeedadliVvGsrg 113
                 +k+++  l la++ +++e++l+ + +  +   + ++++  +    +  + +  +++++ +++ g+ +  ++ve g p e+i ++ae ++a ++V+G+ g
  CTQ27973.1 174 EKLVRETLSLAEEvNHTEVHLIGAYSVTPINIAIELPDFDPSVYNDAIRGQHLLAMKALRQKFGIDEKFTHVEKGLPEEVIPDLAEHLQAGIVVLGTVG 272
                 677788888888777777666655444444444444444444433333333333446799999************************************ PP

                 SSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp 114 rsglsrlllGSvseyvlrhapcpVlvVr 141
                 r+gls ++lG+++e+v+ h  c++lv +
  CTQ27973.1 273 RTGLSAAFLGNTAEQVVDHLRCDLLVLK 300
                 **************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2282.24
//
Query:       CTQ27974.1  [L=250]
Description: DNA-binding transcriptional dual regulator, global regulator of anaerobic growth [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-16   59.8   0.0    4.3e-16   58.8   0.0    1.5  1  cNMP_binding  Cyclic nucleotide-binding domain
    6.1e-16   57.8   0.5      1e-15   57.0   0.5    1.4  1  Crp           Bacterial regulatory proteins, crp family
    9.3e-16   57.6   0.1    1.6e-15   56.8   0.1    1.4  1  HTH_Crp_2     Crp-like helix-turn-helix domain
     0.0089   15.9   0.0      0.027   14.4   0.0    1.8  2  MarR_2        MarR family


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   9.5e-20   4.3e-16       3      85 ..      51     132 ..      49     135 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 9.5e-20
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflel 85 
                    +++g+++f++Gd+ +sly ++sG+++ y+++e+g+e++++++ +Gdl+G  a+ t + ++  ++Al++s ++++p +++++l
    CTQ27974.1  51 PIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGT-GLHPSFAQALETSMVCEIPFETLDDL 132
                   679************************************************99999.99********************9987 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.5   2.3e-19     1e-15       1      32 []     193     224 ..     193     224 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 2.3e-19
                 EE--HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
         Crp   1 LpmSRqdIAdylGlTrETVSRlLtrLrekGLI 32 
                 L+m+R dI++ylGlT+ET+SRlL+r++++G++
  CTQ27974.1 193 LTMTRGDIGNYLGLTVETISRLLGRFQKSGML 224
                 89****************************96 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.1   3.5e-19   1.6e-15       1      67 [.     168     241 ..     168     242 .. 0.86

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 3.5e-19
                 HHHHHHHHHHHCT..TTC....EEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ETEEEEES-HHHHHH CS
   HTH_Crp_2   1 qRlArfLlrlaer..agg....eielpltqeelAsmlGltretvsrilseLkreglis.rgrririldleaLra 67 
                 +RlA+f+++l++r  ++g    e++l +t+ +++++lGlt et+sr+l+++++ g++  +g+ i+i + + L++
  CTQ27974.1 168 ERLAAFIYNLSRRfaQRGfsprEFRLTMTRGDIGNYLGLTVETISRLLGRFQKSGMLAvKGKYITIENSDLLAQ 241
                 7*********8874322344679***********************************76744*****999987 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.9   8.5e+03      40      51 ..       6      17 ..       6      22 .. 0.79
   2 !   14.4   0.0     6e-06     0.027      20      51 ..     183     224 ..     165     229 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.9
                HHHHHHHHTTSE CS
      MarR_2 40 rilkrLvaaGLv 51
                ri++r ++ G  
  CTQ27974.1  6 RIIRRIQSGGCA 17
                899999998865 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 6e-06
                 S..........EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2  20 r..........dltvgelarrlglsksavsrilkrLvaaGLv 51 
                 +           +t g++  +lgl+  ++sr+l r+++ G++
  CTQ27974.1 183 QrgfsprefrlTMTRGDIGNYLGLTVETISRLLGRFQKSGML 224
                 255555567555699*************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1892.99
//
Query:       CTQ27975.1  [L=171]
Description: O-6-alkylguanine-DNA:cysteine-protein methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-35  119.6   0.4    6.1e-35  119.2   0.4    1.2  1  DNA_binding_1    6-O-methylguanine DNA methyltransferase, DNA
      2e-12   47.7   0.0    2.7e-12   47.3   0.0    1.2  1  Methyltransf_1N  6-O-methylguanine DNA methyltransferase, rib


Domain annotation for each model (and alignments):
>> DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.4   6.8e-39   6.1e-35       1      80 [.      88     167 ..      88     168 .. 0.99

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 6.8e-39
                    HHHHHHHHHHTTS-TT-BEEHHHHHHHTT.TSCHHHHHHHHHTSSBTTTSGGGGEEBTTSBCCTTTTCHHHHHHHHHHTT CS
  DNA_binding_1   1 afqqrVwellrqIpyGkvttYgeiAkllgkpkaaraVgqalaanplailvPcHRVvgadgklggyagglerkralLeaEg 80 
                    +fq++Vw++lr Ip G+v+ Yg++A++lg+p+aaraVg+a++anp++i+vPcHRV+g++g+++gyagg++rk++lL++Eg
     CTQ27975.1  88 PFQRQVWQALRVIPCGQVMHYGQLAEALGRPGAARAVGAANGANPVSIVVPCHRVIGRNGTMTGYAGGVQRKEWLLRHEG 167
                    6******************************************************************************9 PP

>> Methyltransf_1N  6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0     3e-16   2.7e-12       2      76 ..       4      83 ..       3      84 .. 0.95

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 3e-16
                     -EEEEEEETTEEEEEEEETTC.EEEEEEEC-HHHCCHHHCCCTTTSC.....CHCCHHHHHHHHHHHHHHHHS--B-SHCH CS
  Methyltransf_1N  2 lyytlidsplgrlllagdEkg.llaidlldkdtselkelpkllkqde.....elpalaelkqaleeYfageekpaltlPld 76
                     l+  ++d+plg+l++++dE++ l+a+++++  ++ +  l +++++ e        ++++l+++l  Yfag + ++ tlP++
       CTQ27975.1  4 LLQDKMDTPLGPLWVLCDEQFnLRAVEWDEHRDR-METLLDVHYRREgyqrvDCRNPGGLSSKLSDYFAGDLAIIETLPTA 83
                     56678****************************9.***************999999***********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1378.03
//
Query:       CTQ27976.1  [L=58]
Description: hypothetical protein CH1034_200017 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 477.10
//
Query:       CTQ27977.1  [L=508]
Description: para-aminobenzoyl-glutamate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.3e-198  659.5  31.5   2.6e-198  659.4  31.5    1.0  1  ABG_transport  AbgT putative transporter family


Domain annotation for each model (and alignments):
>> ABG_transport  AbgT putative transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  659.4  31.5  1.4e-202  2.6e-198       3     500 ..      16     505 ..      14     507 .. 0.98

  Alignments for each domain:
  == domain 1  score: 659.4 bits;  conditional E-value: 1.4e-202
  ABG_transport   3 ldvverlGnklPdPvllfiilivvllvasailsalglsvknpraegeketievknllseeglallltelvknftsfapLGlvLvvllGvgvaersG 98 
                    +++ve++Gnk+P+P+llfi+li vl+ a+ailsal++ v+np ++g++  + vknlls egl+++l +++knf++fapLG++L+++lG+g aer+G
     CTQ27977.1  16 YGWVEKIGNKVPHPFLLFIYLIAVLIAATAILSALNVGVQNP-TDGSR--VVVKNLLSVEGLHWFLPNVIKNFSGFAPLGAILALVLGAGFAERVG 108
                    789***************************************.67666..********************************************** PP

  ABG_transport  99 llsallkklvrkapkklitptvvligilshtasdaayvvliPlaallfialGrhPlaGlaaafagvsggfsanlllgtlDvllagitqeaariidp 194
                    ll al+ k+ +++++++++++v++i+++sh++sdaa+v+++Pl+al+f+a+GrhP+aGl aa+agv++gf+anll++t+Dvll+gi++eaa+ id 
     CTQ27977.1 109 LLPALMVKMASHVSARYASYMVLFIAFFSHISSDAALVIMPPLGALMFLAVGRHPVAGLLAAIAGVGCGFTANLLIVTTDVLLSGISTEAAKSIDA 204
                    ************************************************************************************************ PP

  ABG_transport 195 sykvnplanwyfiaasvvvlvlialfvtdkivePrLgkykgeeekdekeelaselteeekkglryaglavvvviallaltviPeegiLrdeekesv 290
                    s++v++++nwyf+a+sv+vl+l++ ++tdk+vePrLg+++g+  +dek ++   lt+ e+ glr+ag+a++v++a++al+v+Pe+giLrd+ +++v
     CTQ27977.1 205 SLHVSVIDNWYFMATSVIVLTLVGGLITDKLVEPRLGQWQGS--RDEKLQT---LTPGERFGLRIAGVATLVFVAVIALMVVPENGILRDPVQHTV 295
                    *****************************************7..5555554...9***************************************** PP

  ABG_transport 291 aksPflksivalilllflvpglvYGivtktiknekdvvkalaesmssmgayivlvffaaqfvalfnwsnlGkilavkgaelLkeigltgillllgl 386
                    + sPf+k+iv+li+ +f+v++l+YGi+t++i++++d+ + ++e+m++m+ +iv+vf +aqfva+fnwsn+Gk++av  ++lL+++g++g+++++gl
     CTQ27977.1 296 MPSPFIKGIVPLIIFFFFVVSLAYGIATGKIRRQADLPQLMIEPMKEMAGFIVMVFPLAQFVAMFNWSNMGKFMAVGLTDLLESSGMNGVPAFVGL 391
                    ************************************************************************************************ PP

  ABG_transport 387 illsalinlligsasakWavlaPifvPmlmllgisPeltqaayRigDsvtniitPlmsyfplvlalaqkykkklgiGtllslllPYsiaflvvwvl 482
                     llsa+++++i+s+sa W++laPifvPm+mllg++P+++q+++Ri+Ds + +++P+++++pl+l ++q+y++++ +Gt++sl+lPY+++fl vw+l
     CTQ27977.1 392 ALLSAFLCMFIASGSAIWSILAPIFVPMFMLLGFHPAFAQILFRIADSSVLPLAPVSPFVPLFLGFLQRYRPDARLGTYYSLVLPYPLIFLAVWLL 487
                    ************************************************************************************************ PP

  ABG_transport 483 lllvwvllglplGpgapi 500
                    ll+ w+l+glp+Gpg++ 
     CTQ27977.1 488 LLMGWYLVGLPIGPGIYP 505
                    **************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.37
# Mc/sec: 4149.23
//
Query:       CTQ27978.1  [L=481]
Description: putative peptidase, aminobenzoyl-glutamate utilization protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-05   25.3   0.6    5.1e-05   23.2   0.6    2.1  1  M20_dimer      Peptidase dimerisation domain
    1.1e-05   25.2   0.0    2.6e-05   24.0   0.0    1.7  1  Peptidase_M20  Peptidase family M20/M25/M40


Domain annotation for each model (and alignments):
>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.6   5.7e-09   5.1e-05      12     102 ..     192     279 ..     183     284 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 5.7e-09
                 EEE-B-EEGG.-TTTTB-HHH......HHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHT CS
   M20_dimer  12 tvkgkagHsg.apgagaNAie......klarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeile 102
                 +++g+a+H++  p+ g++A+         + +l+e   e          +r   ++t   gG ++nv+ ++ae+ + iR +   d+e++ ++ie+i++
  CTQ27978.1 192 RFTGTAAHAAnSPHLGRSALDavtlmtTGSNFLNEHIIE---------KARVHYAITD-TGGVSPNVVQAQAEVLYLIRAPEMADAEQIFARIEKIAQ 279
                 689***************998554444334444443333.........3456777777.6778********************************986 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.9e-09   2.6e-05      20     116 ..      99     299 ..      77     370 .. 0.63

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.9e-09
                    TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEEEEEEEESSSBTCHSTETEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20  20 pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdavfelhieepgileagklaigv 114
                    p ++   +G  +G+G++   +  +aa+ a++ + +++++  gt+++   p EEgg +G   ++  gl+  ++vda++    + p  +  g ++ + 
     CTQ27978.1  99 PLTPG-ANG--HGCGHNLLGTAAFAAAVAAKGWLQQHGD-SGTLRFYGCPGEEGG-SGKTFMVReGLF--DDVDAAL---TWHPEAWA-GMFSTRT 183
                    33333.456..*******999999999999999999887.8************87.999999996666..4777755...45455555.4433333 PP

                    E............................................................................................... CS
                    x............................................................................................... RF
  Peptidase_M20 115 v............................................................................................... 115
                                                                                                                    
     CTQ27978.1 184 Laniqaawrftgtaahaansphlgrsaldavtlmttgsnflnehiiekarvhyaitdtggvspnvvqaqaevlylirapemadaeqifariekiaq 279
                    355556666666666666666666666666667777777777777777777666666666666666555555555555555555555555555555 PP

                    ...................E CS
                    ...................x RF
  Peptidase_M20 116 ...................k 116
                                       +
     CTQ27978.1 280 gaalmtetqvscrfekacsS 299
                    55555555555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 4008.44
//
Query:       CTQ27979.1  [L=436]
Description: putative peptidase, para-aminobenzoyl-glutamate utilization protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-31  107.5   3.4    1.1e-30  106.9   3.4    1.3  1  Peptidase_M20  Peptidase family M20/M25/M40
    5.3e-11   42.4   0.2    1.2e-10   41.3   0.2    1.6  1  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   3.4   1.3e-34   1.1e-30       1     206 [.     112     428 ..     112     429 .. 0.87

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 1.3e-34
                    EEEEES-BSS.TTCGGGSSS.TTSEE....ETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTT CS
                    xxxxxxxxxx.xxxxxxxxx.xxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
  Peptidase_M20   1 llgsHlDvVp.eeetdgwtt.pfslt....eedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleere 89 
                    +++ ++D++  +e++d+ ++ p++ +    +  G+++++G+d+++++ l+++++l++++++    +g i+l+fqp+EEg+ +Ga+a+++ g+   +
     CTQ27979.1 112 AFRVDMDALDlNEQHDD-SHrPHRDHfascNA-GMMHACGHDGHTAIGLGLAHVLKQYAAQL---NGVIKLIFQPAEEGT-RGARAMVAaGVV--D 199
                    5899******9999977.56688888888566.****************************8...*************87.********7776..5 PP

                    CESEEEEEEEESSSBTCHSTETEEEE...................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................... RF
  Peptidase_M20  90 kvdavfelhieepgileagklaigvv...................................................................... 115
                    +vd++ ++hi+ +g++  g+    vv                                                                      
     CTQ27979.1 200 DVDYFTAIHIG-TGVPA-GT----VVcggdnfmattkfdvqfsgvaahaggkpedgrnallaaaqaalglhaipphsagasrvnvgvmqagtgrnv 289
                    9**********.99999.77....444788****************************************************************** PP

                    .......................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSC..EEEE.EESSSBHTHHHH.TT CS
                    .......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxxxx.xx RF
  Peptidase_M20 116 .......................................kvevelleggapvtlndsplvkalaeaaeelfgek..veli.vsgpggtdarff.ag 168
                                                           ++e++  +g+a + ++++++v+ l+e a ++ g++  v++i ++  g++da  + a+
     CTQ27979.1 290 vpssallkvetrgeseainqyvferaqhvvagaaamyeaRYELR-MMGAATASAPSPAWVDYLREQAARVPGVQqaVDRIaAP-AGSEDATLMmAR 383
                    ***********************************995445555.35555555559*************88877656666444.6********966 PP

                    TE......EEEEEESSGGCTTS.TTTEEE..HHHHHHHHHHHHHHHH CS
                    xx......xxxxxxxxxxxxxx.xxxxxx..xxxxxxxxxxxxxxxx RF
  Peptidase_M20 169 ip......tvmifgpgsglaHs.pnEyvd..ledlekgikvlarlle 206
                    ++      ++mifg++  l+ + +nE++d  ++ ++ ++++lar+++
     CTQ27979.1 384 VQargglaSYMIFGTE--LSAGhHNEKFDfdESVMAVAVETLARVAL 428
                    6334566699****77..4444477777776999********99876 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.2   1.3e-14   1.2e-10       9     102 ..     231     320 ..     227     327 .. 0.89

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.3e-14
                 EEEEEE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHT CS
   M20_dimer   9 gkitvkgkagHsg.apgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeile 102
                 + + + g+a+H+g  p++g+NA+ ++a++   l++      +++s++ + +nv++ ++G+ +nv+p++a +k++ R + +   + v e+ + +++
  CTQ27979.1 231 FDVQFSGVAAHAGgKPEDGRNALLAAAQAALGLHAI-----PPHSAGASRVNVGVMQAGTGRNVVPSSALLKVETRGESEAINQYVFERAQHVVA 320
                 77889*******************************.....46688******************************9988888888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 3274.95
//
Query:       CTQ27980.1  [L=302]
Description: DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-37  128.8   0.0    2.5e-37  128.3   0.0    1.2  1  LysR_substrate  LysR substrate binding domain
    7.9e-19   67.4   0.9    7.9e-19   67.4   0.9    2.4  3  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   0.0   2.8e-41   2.5e-37       2     207 ..      91     296 ..      90     298 .. 0.96

  Alignments for each domain:
  == domain 1  score: 128.3 bits;  conditional E-value: 2.8e-41
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGGSS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLarge 94 
                     g+++g+++ig   ++ar+l+p ++ rf++++P+v++++ eg+  ++++ l++gelD+ i +  p   d+++ +++L+e p+ ++a+++hp a+  
      CTQ27980.1  91 GEQAGQINIGLGASVARSLMPSVICRFHQQHPQVKVRIMEGQLLAMINELRQGELDFTINTYYPgpYDHEFSFEKLFEKPFAVFARAGHPAAQA- 184
                     7899**********************************************************999************************97775. PP

                     SECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEET CS
  LysR_substrate  95 pvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrk 189
                      +sl +L d+ + + ++  ++  +l++ +++ g++p+v++ +++++++++lv   + +++lp  + +d l +++lv++p++e  +++++yl+ r+
      CTQ27980.1 185 -TSLGELMDHHWTMPTPRGSYFKQLQECFEQLGREPKVGIVCETFSSCISLVVKSDFLSILPVELGNDPLMADKLVMIPIREVLPTATYYLIQRR 278
                     .678******************************************************************************6666********* PP

                     TCCCHHHHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidflrea 207
                     + +++p+++ +i ++r++
      CTQ27980.1 279 DTRQTPLTASLITLFRRQ 296
                     *************99986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.9   8.9e-23   7.9e-19       2      60 .]       8      66 ..       7      66 .. 0.97
   2 ?   -3.2   0.0      0.96   8.6e+03      41      50 ..      82      91 ..      76      94 .. 0.69
   3 ?   -2.6   0.0      0.63   5.6e+03      45      59 ..     173     188 ..     163     189 .. 0.59

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 8.9e-23
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                +q+r+fv+va+egs+++A ++L +sqpa++++ik+LEe l ++Lf+R ++g+ LT+ Ge
  CTQ27980.1  8 HQIRAFVEVAREGSIRGASRALAVSQPALTKAIKELEEGLSAQLFVRRSQGVALTDNGE 66
                79*********************************************999******997 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.96
                HTS-SEEESS CS
       HTH_1 41 lgvpLfeRtg 50
                 +++L++R+g
  CTQ27980.1 82 AQDELLQRQG 91
                4567888876 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.63
                 SEEESSSE.EEE-HHH CS
       HTH_1  45 LfeRtgrg.lrLTeaG 59 
                  f R g+  ++ T  G
  CTQ27980.1 173 VFARAGHPaAQATSLG 188
                 5667777557777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2396.47
//
Query:       CTQ27981.1  [L=187]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-18   65.7   0.0    5.3e-18   65.2   0.0    1.3  1  Smr          Smr domain
  ------ inclusion threshold ------
       0.13   12.1   0.1        4.5    7.1   0.0    2.2  2  ClpS         ATP-dependent Clp protease adaptor protein ClpS
       0.14   11.5   0.0       0.21   11.0   0.0    1.2  1  Helo_like_N  Fungal N-terminal domain of STAND proteins


Domain annotation for each model (and alignments):
>> Smr  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   8.9e-22   5.3e-18       6      80 .]      93     169 ..      88     169 .. 0.93

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 8.9e-22
                 --HHHHHHHHHHHHHHHHHTT-SEEEEE--STTSTT..HCHHHHHHHHHHHCSTTEEEEEE--CCCTGGGEEEEEE- CS
         Smr   6 lrraealnvletfldaasakglrsvevihGkGahag..vgvLrpavmgwLagkeaveafreaekkeGgkGavvVlLk 80 
                   +++++++l  f+ +a+++glr+v+++hGkG+ ++  + ++r+ + +wL++ ++v+af+ a +++Gg+Ga++V L+
  CTQ27981.1  93 QPVEQCRQMLFAFMVQAQKEGLRNVLIVHGKGRDDQshANIIRSYLARWLEELPEVQAFCAALPHHGGSGACYVALR 169
                 56799****************************94456************************************997 PP

>> ClpS  ATP-dependent Clp protease adaptor protein ClpS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.016        94      18      48 ..      95     125 ..      93     132 .. 0.88
   2 ?    7.1   0.0   0.00076       4.5      44      73 ..     157     186 ..     137     187 .] 0.92

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHSSS-HHHHHHHHHHHHHHSE CS
        ClpS  18 mefVvevLqkvfgkskeeAteimlevhreGr 48 
                 +e+  ++L  ++ + ++e  + +l vh +Gr
  CTQ27981.1  95 VEQCRQMLFAFMVQAQKEGLRNVLIVHGKGR 125
                 6777788999999999*************98 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00076
                 HHHSEEEEEEE-HHHHHHHHHHHHH..... CS
        ClpS  44 hreGravvgvgtreiaetkveqverlarre 73 
                 h+ G++++ v  r++a+ k+e+ e++a+r+
  CTQ27981.1 157 HHGGSGACYVALRKSAQAKQETWEQHAKRS 186
                 99***********************99875 PP

>> Helo_like_N  Fungal N-terminal domain of STAND proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.4e-05      0.21      49      84 ..      71     105 ..      62     116 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.4e-05
  Helo_like_N  49 eevLesLeevavaeeeselalLklpllrCgkaCkef 84 
                  ++vL++L++  + +++++l+lL++p+++C+++   f
   CTQ27981.1  71 SGVLDKLRR-GKYSQQASLSLLRQPVEQCRQMLFAF 105
                  479******.7799****************986665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1432.85
//
Query:       CTQ27982.1  [L=268]
Description: Pca regulon regulatory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-34  119.1   0.1    1.7e-34  118.4   0.1    1.3  1  IclR      Bacterial transcriptional regulator
    1.1e-13   50.7   0.0    3.3e-13   49.2   0.0    1.9  1  HTH_IclR  IclR helix-turn-helix domain
      5e-06   26.8   0.0    7.1e-05   23.1   0.0    2.4  2  Rrf2      Transcriptional regulator
    0.00028   20.7   0.0    0.00098   19.0   0.0    1.9  3  TrmB      Sugar-specific transcriptional regulator TrmB
    0.00089   18.8   0.0      0.032   13.8   0.0    2.5  2  HTH_24    Winged helix-turn-helix DNA-binding
     0.0012   18.7   0.1     0.0044   16.9   0.0    2.0  2  MarR_2    MarR family
     0.0022   18.0   0.0     0.0083   16.2   0.0    1.9  2  HTH_9     RNA polymerase III subunit RPC82 helix-turn-helix d
     0.0094   15.8   0.0      0.024   14.5   0.0    1.7  1  HTH_5     Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.024   14.6   0.0    1.6  1  HTH_11    HTH domain
      0.017   14.8   0.0      0.038   13.7   0.0    1.5  1  RP-C      Replication protein C N-terminal domain
       0.08   13.6   0.0       0.28   11.9   0.0    1.8  2  RPA_C     Replication protein A C terminal


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.1   1.1e-37   1.7e-34       2     127 ..     139     264 ..     138     265 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 1.1e-37
                 SEEETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEE CS
        IclR   2 rlravsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvs 100
                  +++ + iG+rlp++at++G++lL++++ee+l+ +l r+++ r+t++T+ + ++L++eL++v +qGya++++E e g+r++A+p+f+a+g+v aA++v 
  CTQ27982.1 139 IMTIDLDIGSRLPAWATSMGRVLLSHQPEEKLNDMLGRVTMIRYTPQTVDSVAKLRAELKRVHQQGYALNDQELEMGLRSLAVPLFNAQGQVQAALNVG 237
                 589999********************************************************************************************* PP

                 EETTTSHHHHHHHHHHHHHHHHHHHHH CS
        IclR 101 gptarlteeelkeellalvreaArkis 127
                 +++ ++t +e+ e++l+ +++aAr+++
  CTQ27982.1 238 VHAGQMTAREMIERVLPELQKAARELT 264
                 ************************985 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0     2e-16   3.3e-13       1      49 [.      25      73 ..      25      76 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 2e-16
                HHHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  1 sldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                sl+R+l++++a++ +++ l++s+++++tg+p+++v+R+L tL +lG+v 
  CTQ27982.1 25 SLARGLEVIQAFTPQRPLLSISQISQKTGIPRAAVRRCLYTLSKLGFVY 73
                79*********************************************97 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   4.3e-08   7.1e-05      21      62 ..      38      79 ..      26      83 .. 0.87
   2 ?    0.7   0.0      0.42   6.8e+02      31      52 ..     238     259 ..     209     260 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.3e-08
                STCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT- CS
        Rrf2 21 eeeepvsseeiaerqnispsylekilakLrkaglvksvrGkg 62
                +++  +s+++i+++++i++  +++ l +L+k g+v ++ Gk+
  CTQ27982.1 38 PQRPLLSISQISQKTGIPRAAVRRCLYTLSKLGFVYAEDGKN 79
                444559**********************************96 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.42
                 HHHHHTS-HHHHHHHHHHHHHT CS
        Rrf2  31 iaerqnispsylekilakLrka 52 
                 +++ q + ++++e++l +L+ka
  CTQ27982.1 238 VHAGQMTAREMIERVLPELQKA 259
                 56678889999******99997 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     6e-07   0.00098      24      59 ..      44      79 ..      39      88 .. 0.87
   2 ?   -3.7   0.0         7   1.1e+04      16      30 ..     178     192 ..     177     192 .. 0.78
   3 ?   -3.6   0.0       6.4     1e+04      20      31 ..     240     251 ..     238     253 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6e-07
                HHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTT CS
        TrmB 24 tadeiaeelgvprskvYevLrsLedkGlVerekgrp 59
                ++++i++++g+pr+ v + L  L++ G+V+ e+g+ 
  CTQ27982.1 44 SISQISQKTGIPRAAVRRCLYTLSKLGFVYAEDGKN 79
                5789****************************9983 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7
                 HHHHHCCCHHCHHCC CS
        TrmB  16 aLlklgpatadeiae 30 
                 +++++ p t+d +a+
  CTQ27982.1 178 TMIRYTPQTVDSVAK 192
                 567788999999986 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 6.4
                 HCCCHHCHHCCC CS
        TrmB  20 lgpatadeiaee 31 
                  g++ta+e  e+
  CTQ27982.1 240 AGQMTAREMIER 251
                 688888887665 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     2e-05     0.032      16      47 ..      41      72 ..      30      73 .. 0.85
   2 ?    2.4   0.0     0.071   1.2e+02      30      43 ..     102     115 ..      99     116 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
      HTH_24 16 prisqreLAerlglSpstvnrrlkrLeeeGlI 47
                p +s++++++++g+++++v+r+l  L + G++
  CTQ27982.1 41 PLLSISQISQKTGIPRAAVRRCLYTLSKLGFV 72
                679*******************9888888876 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.071
      HTH_24  30 SpstvnrrlkrLee 43 
                 S ++v+r+l ++ +
  CTQ27982.1 102 SAQPVLRHLSEMLN 115
                 89********9976 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.7e-06    0.0044      17      57 ..      40      78 ..      27      83 .. 0.87
   2 ?   -2.2   0.0       2.5   4.1e+03      16      53 ..     238     251 ..     228     259 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.7e-06
                TTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESS CS
      MarR_2 17 rpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgp 57
                rp   l+++++ +++g++++av r l  L++ G+v  ++g 
  CTQ27982.1 40 RPL--LSISQISQKTGIPRAAVRRCLYTLSKLGFVYAEDGK 78
                444..7*****************************988775 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
                 CTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2  16 rrpgrdltvgelarrlglsksavsrilkrLvaaGLver 53 
                  + g+ +t++e  +                       r
  CTQ27982.1 238 VHAGQ-MTAREMIE-----------------------R 251
                 44443.45555444.......................3 PP

>> HTH_9  RNA polymerase III subunit RPC82 helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.1e-06    0.0083      28      57 ..      43      72 ..      39      75 .. 0.94
   2 ?   -2.6   0.0       3.9   6.4e+03      21      35 ..     178     192 ..     177     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.1e-06
                BEHHHHHHHHSSTHHHHHHHHHHHHHTTSE CS
       HTH_9 28 ltlrelvkktkLsldqVkksLvvLiqhrlV 57
                l+++++++kt++++  V++ L++L ++++V
  CTQ27982.1 43 LSISQISQKTGIPRAAVRRCLYTLSKLGFV 72
                899*************************99 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.9
                 HHHHHSSBEHHHHHH CS
       HTH_9  21 tLlrkgrltlrelvk 35 
                 t++r++ +t++  +k
  CTQ27982.1 178 TMIRYTPQTVDSVAK 192
                 678999999987665 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.5e-05     0.024      15      46 ..      41      73 ..      30      74 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
                S.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5 15 e.lcvcelaeelglsqstvShHLkkLreaGLVe 46
                + l++++++ ++g+++++v++ L  L ++G+V+
  CTQ27982.1 41 PlLSISQISQKTGIPRAAVRRCLYTLSKLGFVY 73
                5589***************************96 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.5e-05     0.024      12      51 ..      39      77 ..      28      80 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.5e-05
      HTH_11 12 argpisgeeLAeeLnvSrrtvrrdIkaLeelgvpIesepg 51
                +r+ +s++++++++++ r++vrr + +L++lg  +++e g
  CTQ27982.1 39 QRPLLSISQISQKTGIPRAAVRRCLYTLSKLG-FVYAEDG 77
                5656****************************.6776665 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.3e-05     0.038      75     110 ..      46      81 ..      38      86 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.3e-05
        RP-C  75 aqLsralglsestlrrhlaaLveaGliirrDspngk 110
                  q+s+++g++++++rr+l  L ++G++   D  n +
  CTQ27982.1  46 SQISQKTGIPRAAVRRCLYTLSKLGFVYAEDGKNFQ 81 
                 6999****************************9987 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017      0.28      68      99 ..      43      74 ..      28      75 .. 0.91
   2 ?   -1.6   0.0       2.6   4.2e+03      57      74 ..     226     244 ..     191     264 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
                EEHHHHHHHSTSXHHHHHHHHHHHHHTTSEEE CS
       RPA_C 68 vhvdeiaqklrlsvndvkqavdeLsneGiiYs 99
                +++++i+qk++++ + v++ + +Ls+ G +Y+
  CTQ27982.1 43 LSISQISQKTGIPRAAVRRCLYTLSKLGFVYA 74
                7899***************************6 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.6
                 HHHH..SXSTTTEEHHHHH CS
       RPA_C  57 likq.speseeGvhvdeia 74 
                 +  q +++ + Gvh+ ++ 
  CTQ27982.1 226 AQGQvQAALNVGVHAGQMT 244
                 3333334444455554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2121.32
//
Query:       CTQ27983.1  [L=228]
Description: 3-oxoadipate CoA-transferase subunit A (Beta-ketoadipate:succinyl-CoA transferase subunit A) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-69  233.6   0.1    1.8e-69  233.4   0.1    1.0  1  CoA_trans  Coenzyme A transferase


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.4   0.1     1e-73   1.8e-69       2     215 ..       7     217 ..       6     219 .. 0.98

  Alignments for each domain:
  == domain 1  score: 233.4 bits;  conditional E-value: 1e-73
                 CHHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHTTTSEEEEESTTTE..ECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHH CS
   CoA_trans   2 etaaeavakeikdGmtvavGGFgligiPealiaalarsgvkdltviiseagv..lglgplllngsvkkviasyggetvnprfgkqflsgelefellpqg 98 
                  t+ ea+a  i+dG+t+++GGFg +g P+ li+al+++g +dlt+i ++ag   +gl +ll++g+v+k+i+s+  +  +  f+  +  g++e+el+pqg
  CTQ27983.1   7 STLSEAIA-GIHDGATIMIGGFGPAGQPTFLIDALIDQGARDLTIINNNAGNgeVGLAALLKAGRVRKMICSFPRQVDSQIFDDLYRRGKVELELVPQG 104
                 6899****.*****************************************9999**********************99********************* PP

                 HHHHHHHHHHHTEETTEEEESTTTTSHGGTTESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHSHHHHHHEEEEEEEEEEEECTT CS
   CoA_trans  99 tlaerlraGgaglpelgfltntgigtlvapklkkvpgfgGaeyilepalkadvalikaskadeegnlvfeksagnfnkpaiaeaakvtileveeivekg 197
                 +la r++a+gagl+  +++t+tg+gt +a++ k++++++G++y+le+++kad+alika+++d++gnlv++k+a+nf+ p +a+aak+ti+ev ++v  g
  CTQ27983.1 105 NLAARIQAAGAGLG--AVFTPTGYGTPLAEG-KETREIDGRHYVLEYPIKADFALIKAHQGDRWGNLVYRKAARNFG-PIMATAAKTTIVEVSQLVALG 199
                 **************..*********999999.8********************************************.********************* PP

                 SSECCCESBTGGGHSEEE CS
   CoA_trans 198 kldpekvliPgvlvdavv 215
                 +ldpe++++Pg++v++v 
  CTQ27983.1 200 DLDPENIITPGIFVQRVF 217
                 ****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1962.65
//
Query:       CTQ27984.1  [L=218]
Description: 3-oxoadipate CoA-transferase subunit B (Beta-ketoadipate:succinyl-CoA transferase subunit B) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-38  132.4   0.0    1.7e-38  132.2   0.0    1.0  1  CoA_trans  Coenzyme A transferase


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2   0.0   9.4e-43   1.7e-38       2     214 ..       7     201 ..       6     203 .. 0.96

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 9.4e-43
                 CHHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHTTTSEEEEESTTTEECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHHHH CS
   CoA_trans   2 etaaeavakeikdGmtvavGGFgligiPealiaalarsgvkdltviiseagvlglgplllngsvkkviasyggetvnprfgkqflsgelefellpqgtl 100
                 +++a++va++i++G++v++G    ig+P + ia++++    ++++++se+g+lg+gp +++g+++ +++++g+e+v+   g +++++  +f+ +++g++
  CTQ27984.1   7 DEMAQRVARDIPEGAYVNLG----IGLP-TRIANYLPA--DKEVFLHSENGLLGMGPKPQPGEEDPELINAGKEYVTLLQGGCYFHHGDSFA-MMRGGH 97 
                 5799****************....****.********9..****************************************************.****** PP

                 HHHHHHHHHTEETTEEEESTTTTSHGGTTESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHSHHHHHHEEEEEEEEEEEECTTSS CS
   CoA_trans 101 aerlraGgaglpelgfltntgigtlvapklkkvpgfgGaeyilepalkadvalikaskadeegnlvfeksagnfnkpaiaeaakvtileveeivekgkl 199
                 ++++++G+ +++  g+l+n+ +g   ap+   +p +gGa++++++a + +++++ + ++d+e +lv ++s++ ++ ++++  +++t+l+v++i    + 
  CTQ27984.1  98 LDICVLGAYQVSASGDLANWSTG---APD--AIPAVGGAMDLAIGARQ-VFVMMDHLTRDGECKLVAQCSYPLTGVGCVS--RIYTDLAVIDI--TDRG 186
                 ***********************...999..9***************6.*****************************99..***********..8888 PP

                 ECCCESBTGGGHSEE CS
   CoA_trans 200 dpekvliPgvlvdav 214
                 + ++++ +g++++++
  CTQ27984.1 187 PVVREIFNGLSFEEL 201
                 888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       184  (0.0102627); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1671.51
//
Query:       CTQ27985.1  [L=401]
Description: beta-ketoadipyl CoA thiolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-74  248.7   0.1    7.9e-74  248.3   0.1    1.2  1  Thiolase_N     Thiolase, N-terminal domain
    1.6e-44  150.5   1.4    2.8e-44  149.7   1.4    1.4  1  Thiolase_C     Thiolase, C-terminal domain
    2.8e-06   27.1   0.3    7.3e-06   25.7   0.3    1.7  1  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.3   0.1   1.3e-77   7.9e-74       2     259 ..       6     268 ..       5     269 .. 0.92

  Alignments for each domain:
  == domain 1  score: 248.3 bits;  conditional E-value: 1.3e-77
                 EEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHT.S-GGGCCEEEEEHSSCTTSTSC.HHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHH CS
  Thiolase_N   2 vivsaartpigkfggslkdlsaeeLlaealkallekag.vdpeevdevivGnvlqagegqn.iarqaalkagipeevpavtvnkvcsSglkavalaaqs 98 
                 +i +a+rtp+g+fgg+l+ ++a++L+a  lkall++++ +dp+ +d+vi+G+  qage++  +ar+a l ag+pe+vp +t+n++c+S+l+a+  aa++
  CTQ27985.1   6 FICDAVRTPFGRFGGALATMRADDLAALPLKALLARNPgLDPSRIDDVIFGCANQAGEDNRnVARMALLLAGLPESVPGSTINRLCGSSLDAIGVAARA 104
                 699**********************************99*****************665544************************************* PP

                 HHTTSHSEEEEEEEEESTTS-EEETCTTT...TGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTT CS
  Thiolase_N  99 iaageadvvvagGvEsmsnaptaestdvr...sglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFk 194
                 i++ge + ++agGvEsms+ap ++ ++      +++++d+++    i+  +   +    m  taen+a++++isR +qd+fA++s+ + aaaq+ag+F+
  CTQ27985.1 105 IKSGETQLMIAGGVESMSRAPFVMGKAESafsRSMQMEDTTIGWRFINPQMKALYGVHSMPETAENVADEFAISRADQDAFALRSQLRTAAAQEAGRFA 203
                 *********************99873322333555565555555555556888888899**************************************** PP

                 TTBE-EEEEESSSE.EEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 195 deivPvkvkgkkgk.ktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmse 259
                 de + v+v+++kg+   +++de++rs +++e+Lakl+ + + +G+vtAgnas+++DGa a+ll+se
  CTQ27985.1 204 DELIAVQVPQRKGEpLLFSRDEHPRS-TSLEALAKLRGVVRADGSVTAGNASGVNDGACALLLASE 268
                 **************9***********.************************************998 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   1.4   4.7e-48   2.8e-44       2     123 .]     277     400 ..     276     400 .. 0.97

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 4.7e-48
                 --SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G..GGBSTT--HHHH-B-TTTHHHHHHHHHHHHHH CS
  Thiolase_C   2 kplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl..ekvNvnGGaialGHPlGasGaRivvtllselk 98 
                 +pla+++ +a++gv p+i+g+gPa+a++kvl ++glt+ ++d++E+nEAFaaqaLav+++l+l     +vN nGGaialGHPlGasG R+++t++++lk
  CTQ27985.1 277 QPLARVVGVATAGVAPRIMGFGPAPAVRKVLAQTGLTLGQMDVIELNEAFAAQALAVTRDLGLPDdaAHVNPNGGAIALGHPLGASGGRLAMTAAYQLK 375
                 89************************************************************9653389****************************** PP

                 HCTTSEEEEEEEETTTEEEEEEEEE CS
  Thiolase_C  99 keggklgvaalCigggqgvalviek 123
                 + gg++++ ++Cig gqg+al+ie+
  CTQ27985.1 376 RTGGRYALCTMCIGVGQGIALIIER 400
                 ***********************96 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.3   1.2e-09   7.3e-06     175     221 ..      91     136 ..      83     145 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.2e-09
                    GGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB- CS
  ketoacyl-synt 175 CsSslvavhaavqslrsgeadvalaGGvellltpeavagfsaaglls 221
                    C Ssl a+ +a ++++sge ++++aGGve +++   +++ +a  ++s
     CTQ27985.1  91 CGSSLDAIGVAARAIKSGETQLMIAGGVE-SMSRAPFVMGKAESAFS 136
                    99***************************.55555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3241.51
//
Query:       CTQ27986.1  [L=450]
Description: 3-carboxy-cis,cis-muconate cycloisomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-53  180.4   0.0    8.3e-53  179.8   0.0    1.2  1  Lyase_1     Lyase
      5e-17   62.2   0.4    1.6e-16   60.6   0.4    2.0  1  ADSL_C      Adenylosuccinate lyase C-terminus
     0.0024   17.2   0.4     0.0078   15.5   0.4    1.8  1  UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit T


Domain annotation for each model (and alignments):
>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.8   0.0   1.4e-56   8.3e-53       8     311 ..      11     297 ..       8     298 .. 0.91

  Alignments for each domain:
  == domain 1  score: 179.8 bits;  conditional E-value: 1.4e-56
                 CHHHHHHHHHHHHHGGGHHHHHCHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSSGIIIIIT CS
     Lyase_1   8 dklmgiftersrenfrlseedikalaalkkaaakanvdlkeeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekvepndkvh 106
                 ++l + f++  r + +l+     ++aal++a a  ++ + e++  i++a++  + ++ +  ++++    + +   v+  l+  ++    +  e+++++h
  CTQ27986.1  11 SPLTDWFSDAQRVQGMLD-----FEAALAQAQAACGMVPPEAVGPIVAACRHEAIDFAALGEAAVGA-GNLAIPLVKQ-LTAQVK---TRDPEAARYIH 99 
                 567777888888888888.....9*******************************898886666554.4455566666.666666...5789******* PP

                 TT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTT-EEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTCEETTTTTTTS CS
     Lyase_1 107 tgqSsnDqvpTalrlalkkalsekLlpaleqLidalkekakefkdvvkiGrThlqdAtPvtlgqelsayaealerdrerlkellkrllvellgggtavg 205
                  g++s+D+++T+l l+l+ al +  ++ leqL  +l  +a  ++d+v++GrT+ q+A Pvt+g +l++  +al r ++rl+e+++rllv+++gg++++ 
  CTQ27986.1 100 WGATSQDAIDTGLVLQLRGAL-DAAETLLEQLLATLALQADRYRDTVMPGRTWMQHALPVTFGLKLAGTLDALLRWQQRLREMRPRLLVLQFGGAAGTL 197
                 *********************.55*************************************************************************** PP

                 STTTSCCTHHHHHHHHHHHHHCSTEESSSHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGCCTSSC-TTSTTTEBTHHHHHHH CS
     Lyase_1 206 tglnadpefaelvakelakvtglpvkapnsfeavsdrDavvellgalkllatsLskfaeDlrllssgeaglvelslaesepGSSiMPgKvNPvqlEllt 304
                  +l+ + +   +v   la++ gl  +  +++   s+rD+++e+ ++ + ++  L kfa+D +ll+++e+ +v +  ae+  GSS+MP+K+NPv++ ++ 
  CTQ27986.1 198 DALKEKGP---AVGLALAQILGLSLPDTPWH---SQRDRLLEAGAWFAGVCGTLGKFANDFSLLMQTEVAEVGEPVAEGRGGSSTMPHKRNPVACAAIL 290
                 ****9999...77777888888888999999...****************************************************************9 PP

                 HHHHHHH CS
     Lyase_1 305 gvagrvv 311
                  +a r  
  CTQ27986.1 291 TAAQRTP 297
                 9998865 PP

>> ADSL_C  Adenylosuccinate lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.4   2.7e-20   1.6e-16       1      73 []     362     439 ..     362     439 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 2.7e-20
                 TGGGHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHC...HHHHHHT-HHHH.C.HHCHHHHHT-GGGCCTTHHHHHHHH CS
      ADSL_C   1 GlifservllaLvkglgReeAyelVqeaamkawee...llelLaadpevk.k.seeeldalfdpayylgsadeivdrv 73 
                 Gli++e+++laL++ +g+ eA++ +++++++a ++   l++lLaadp+v+ + s+e+l  l+dpa+ +gsa+++v++v
  CTQ27986.1 362 GLIMAEALTLALAEFIGKAEAHHHIEALCRQALDRhcpLVDLLAADPQVSqYlSRERLTTLLDPATATGSAERFVRQV 439
                 9********************************99***************76*999*******************986 PP

>> UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   1.3e-06    0.0078      18      38 ..      63      83 ..      60      85 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-06
  UCR_Fe-S_N 18 ATgavgaVGaaaaawPfidqm 38
                A+ + +aVGa+ +a+P+++q+
  CTQ27986.1 63 AALGEAAVGAGNLAIPLVKQL 83
                88899***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3776.18
//
Query:       CTQ27987.1  [L=255]
Description: 3-oxoadipate enol-lactonase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-19   69.7   0.0    8.3e-11   42.0   0.1    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    1.3e-13   50.8   0.3      2e-13   50.2   0.3    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
    4.3e-13   50.4   4.8    5.7e-13   50.0   4.8    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    4.1e-06   25.7   0.0    5.4e-06   25.3   0.0    1.1  1  Ndr            Ndr family
  ------ inclusion threshold ------
      0.011   15.9   0.1      0.061   13.4   0.0    2.1  2  Abhydrolase_4  TAP-like protein
      0.018   15.0   1.6      0.039   13.8   1.6    1.5  1  DUF3323        Protein of unknown function N-terminus (DUF332
      0.026   14.2   0.3      0.071   12.7   0.1    1.8  2  Esterase       Putative esterase
      0.032   13.7   0.0       0.92    8.9   0.0    2.2  2  Peptidase_S9   Prolyl oligopeptidase family
      0.062   13.2   0.2       0.11   12.3   0.2    1.4  1  Ser_hydrolase  Serine hydrolase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.1   4.2e-14   8.3e-11       1     115 [.      15     124 ..      15     131 .. 0.91
   2 !   26.4   0.0   2.4e-09   4.7e-06     176     257 .]     129     238 ..     119     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 4.2e-14
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    pv+v+   l+ +  +w     ++aL   +f+v+ +D  G+g++++         ++a + +d+ ++ld+l++d+ +  G SmGG+++l++   +pe
     CTQ27987.1  15 PVIVLSNSLGTTRAMWQP--QIEALTA-HFRVLRYDTHGHGKTTKNGK-----VTLAQLGEDVIALLDHLNIDRAWFCGISMGGLTGLWLGRFAPE 102
                    789999999999******..*****99.***************99997.....58889**********************************99** PP

                    GEEEEEEESE...CSSCCHHHH CS
  Abhydrolase_1  97 rVkalvllga...idpaaslie 115
                    r ++l+  ++   i + as+ +
     CTQ27987.1 103 RFHGLAVANTaarIGDQASWLS 124
                    ******9999888777777765 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 2.4e-09
                    HHCHHHHHHHHHHHHHHHHCCHHHHHHHHHC.............................THHHHS...EEEEEEETTCSSSCHHHHHHHHHCHTS CS
  Abhydrolase_1 176 dnasslatgalksieqwpttdsaklllrlre.............................lknvla...ptlvisgtsDplvppkaledlaqllpk 239
                     ++ ++a +a+++ ++w t++++++  +  e                             +    +   ptl+i+g+sDp+++ +   +l+q++p 
     CTQ27987.1 129 VRQEGMAVVAAGAADRWFTHAFRQKAPEVVEalchqlthtdaegyaaccealaaadlrgeV---GQiplPTLIIAGESDPVTTVGDAHFLQQQIPA 221
                    5677889999999999999999999999999999999999999999999999999886553...33444*************************** PP

                    EEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 240 krlvvisdagHlaflegp 257
                     ++vv+  a Hl+++e p
     CTQ27987.1 222 -SEVVVLAASHLSNIEAP 238
                    .***********999875 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.3     1e-16     2e-13      24     221 ..      34     223 ..      11     231 .. 0.78

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 1e-16
  Hydrolase_4  24 aeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklk.ap 120
                  +eaL+a+ f v+ +D +GhG++  k g+v  + ++ +D+ a+++++       +   +G SmGGl+ l ++   p++++gl ++++a +i  + + ++
   CTQ27987.1  34 IEALTAH-FRVLRYDTHGHGKT-TKNGKV-TLAQLGEDVIALLDHLN----IDRAWFCGISMGGLTGLWLGRFAPERFHGLAVANTAARIGDQASwLS 124
                  5566554.9*************.888866.5899***********99....567899**********************************9954444 PP

  Hydrolase_4 121 pllklllkllgkllpklqvsnnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleeraakitlPllllhGeaDkvvdpeasrelyerlg 218
                  ++ ++ ++ ++ ++      +    ++ ++ pevv+a+  ++l+h +     +     a+++l+ ++ +i lP+l++ Ge+D+v+  ++++ l ++++
   CTQ27987.1 125 RARAVRQEGMAVVAAGAAD-RWFTHAFRQKAPEVVEALC-HQLTHTDAEGYAACCEALAAADLRGEVGQIPLPTLIIAGESDPVTTVGDAHFLQQQIP 220
                  4444444444444444333.4456677788888888765.56777776666666667778899999*********************99999999988 PP

  Hydrolase_4 219 skd 221
                  +++
   CTQ27987.1 221 ASE 223
                  765 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   4.8   2.8e-16   5.7e-13       1     217 [.      17     241 ..      16     244 .. 0.66

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 2.8e-16
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS..--HHHC.HHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC....EEE CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdppp..ldledl.adlaalldelaagggpvvlvGHSlGGalalaaapla..lvvgv 91 
                    ++l + +g+++ +W+  p  ++l+a+++vl +D  GhG  +++    +l+ l +d+ alld+l    ++++  G S+GG+ +l +++ a  + +g+
     CTQ27987.1  17 IVLSNSLGTTRAMWQ--PQIEALTAHFRVLRYDTHGHG-KTTKNgkVTLAQLgEDVIALLDHLN--IDRAWFCGISMGGLTGLWLGRFApeRFHGL 107
                    677888999*****7..6678889999***********.4344412444443578899999996..999***********9999888999988997 PP

                    EES-..----TTTS----TTHHHHHH.......TT-CCCCHCCH......S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCE CS
  Abhydrolase_6  92 lldppptalpagllaaalelllalla.......llrllawlsre......plprlfladedadaawrarlarlaallaglgllpaaawadlpvpll 174
                    +++   ta+++g++a +l+ ++a+++       + ++++w++ +       + + ++++++   + ++ +a+ +  la+ +   + ++ ++p p+l
     CTQ27987.1 108 AVAN--TAARIGDQASWLSRARAVRQegmavvaAGAADRWFTHAfrqkapEVVEALCHQLT--HTDAEGYAACCEALAAAD--LRGEVGQIPLPTL 197
                    7777..7999999888888888777744444434444999973333323222223333222..222222222222222222..2448999999999 PP

                    EE.CTT-CHHHHCHHCCCHSTTEEET...CE...SSS-HHHHSHHHH CS
  Abhydrolase_6 175 vl.ggeDplvprllerllaqagarlp...vvlpgaGHlphleepdev 217
                    ++ g++Dp+    + +++     ++p   vv+  a+Hl ++e+p+ +
     CTQ27987.1 198 IIaGESDPVTT--VGDAHF-LQQQIPaseVVVLAASHLSNIEAPKSF 241
                    996799**666..555555.44444444477889*******999655 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.7e-09   5.4e-06      50     278 ..      35     251 ..      26     253 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2.7e-09
                 HHHHTTSEEEEEE-TT-STT-----TT-----HHHHHTTHHHHHHHHT---EEEEEETHHHHH...HHHHHHHSGGGEEEEEEES---S---HHHHHHH CS
         Ndr  50 aeilekfvilhvdaPGqeegaaslpedyqfpslddladqllavldhfklksviglGvgaGAyi...larfalkhperveglvLinitskaagwvewake 145
                 + ++ +f +l  d+ G+ + +++        +l +l++++ a+ldh++++ +   G+  G      l rfa   per  gl   n+ ++      w  +
  CTQ27987.1  35 EALTAHFRVLRYDTHGHGKTTKN-----GKVTLAQLGEDVIALLDHLNIDRAWFCGISMGGLTglwLGRFA---PERFHGLAVANTAARIGDQASWLSR 125
                 55666666666666666544332.....3569*******************98888888876511256665...9*******99988776666666655 PP

                 HHH.......TTTS-HHHHHHHHHS-HHHHHHT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-------TTSSSS-EEEEEETTSTTHHHHHHHHHHS- CS
         Ndr 146 KlsskllkkvgltdllkdlllahkFgkeeksensdlvreyrkllkerlnsknlelyleaynkRrdleierkklevkvllvvGdkspfvdevvevnskld 244
                       +++ g++ ++      + F ++ +++ +++v++  ++l++++  +  +   ea+    dl  e  +   ++l++ G++ p + +v + +   +
  CTQ27987.1 126 ARA---VRQEGMAVVAAG-AADRWFTHAFRQKAPEVVEALCHQLTHTDA-EGYAACCEALAA-ADLRGEVGQIPLPTLIIAGESDPVT-TVGDAHFLQQ 217
                 444...688899876665.57899999999999*************999.888888888875.8******************999975.4555554444 PP

                 TTTEEEEEETT-TT-HHHH-HHHHHHHHHHHHHH CS
         Ndr 245 kkkttllkvadsgglvleeqPdklaeslklflkG 278
                 +  ++ + v +++ l   e+P+  + +l  f++G
  CTQ27987.1 218 QIPASEVVVLAASHLSNIEAPKSFTSALLSFFQG 251
                 4445555555555999*****************9 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.58   1.2e+03      47      77 ..      25      55 ..       6      65 .. 0.65
   2 ?   13.4   0.0     3e-05     0.061      34      75 ..     193     233 ..     159     252 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.58
  Abhydrolase_4 47 aTPyegakklakalggavlvtvegeGHgala 77
                   +T   ++ ++       +++ ++  GHg  +
     CTQ27987.1 25 TTRAMWQPQIEALTAHFRVLRYDTHGHGKTT 55
                   4555566655555555689999999999876 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3e-05
  Abhydrolase_4  34 aapvLllqnerDpaTPyegakklakalggavlvtvegeGHga 75 
                      p+L++++e Dp+T    a  l+++++ ++ v+v  + H +
     CTQ27987.1 193 PLPTLIIAGESDPVTTVGDAHFLQQQIPASE-VVVLAASHLS 233
                    579*************************555.5555555555 PP

>> DUF3323  Protein of unknown function N-terminus (DUF3323)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.6   1.9e-05     0.039      77     180 ..     120     240 ..     100     248 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.9e-05
     DUF3323  77 eawaavfaale...aeaaarpelreWld...klrgygllrrlykkdeeaarellrqalrvlaaLpadg....vrlpvl.....A..arvtgdpHaLDag 158
                 + w +  +a++    +++a+ ++ +W+    + ++ +++  l ++ + + +e  ++++++laa   +g    ++lp l     +    ++gd+H+L ++
  CTQ27987.1 120 ASWLSRARAVRqegMAVVAAGAADRWFThafRQKAPEVVEALCHQLTHTDAEGYAACCEALAAADLRGevgqIPLPTLiiageSdpVTTVGDAHFLQQQ 218
                 4443333333344447777888888888888778888888888888888788899999999998443345569999886655542245669******** PP

     DUF3323 159 tplgrlvlralaalageedpad 180
                  p++ +v+ a ++l + e+p++
  CTQ27987.1 219 IPASEVVVLAASHLSNIEAPKS 240
                 ***********99999999875 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.98     2e+03     144     160 ..      17      36 ..      15      73 .. 0.67
   2 ?   12.7   0.1   3.6e-05     0.071     120     141 ..      84     105 ..      75     144 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.98
                 EEES--S-CCHCHHHC...T CS
    Esterase 144 ssfSpivnpsnamWgq...e 160
                 +++S  + ++ amW +   +
  CTQ27987.1  17 IVLSNSLGTTRAMWQPqieA 36 
                 55566688889999874430 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.6e-05
                 EEETHHHHHHHHHHHCSTTTCC CS
    Esterase 120 aGqSmGGlgALilalkhpdrFg 141
                  G+SmGGl+ L+l+  +p+rF 
  CTQ27987.1  84 CGISMGGLTGLWLGRFAPERFH 105
                 6********************6 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00046      0.92      60      94 ..      75     109 ..      41     117 .. 0.79
   2 ?    2.6   0.0     0.041        81      92     159 ..     135     209 ..     133     224 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00046
                   S--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEE CS
  Peptidase_S9  60 yvdserlaitGgSyGGyltgaalnqrpdlFkaava 94 
                     + +r    G S GG++ +++   +p++F++++ 
    CTQ27987.1  75 HLNIDRAWFCGISMGGLTGLWLGRFAPERFHGLAV 109
                   4466899999********************98654 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.041
                   EEEESE---CCCHHCSTTS...THHHCCCC--TTTCHHHHHHHHHH-CGGG--.....---EEEEEEETT-SSS-T CS
  Peptidase_S9  92 avaevpvvdvlrydsdtdl...lteeymewgnpeeneegykelspyspldnvk.....aypplLlihGlaDdrvpp 159
                   av +++ +d   ++ + +      e  +++ ++  + egy ++ ++  ++ ++     +  p+L+i G+ D  +++
    CTQ27987.1 135 AVVAAGAADRWFTHAFRQKapeVVEALCHQLTH-TDAEGYAACCEALAAADLRgevgqIPLPTLIIAGESDPVTTV 209
                   666777777777777765554433444454554.688899999999999998999999999**********97765 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   5.6e-05      0.11     106     155 ..     185     234 ..     107     247 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.6e-05
                    TTS-SSHHCCHCEEEEETTBTTC-HHHHHHHHHHCT-EEEEETT-TTSSG CS
  Ser_hydrolase 106 aplpreklpfpslvvaSenDpyvsfeeaeelaeawgaelvdlgeaGHina 155
                     + +  + p+p+l++a e Dp+ ++  a+ l +++ a+ v++  a H+  
     CTQ27987.1 185 LRGEVGQIPLPTLIIAGESDPVTTVGDAHFLQQQIPASEVVVLAASHLSN 234
                    35567789********************************9999***964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2058.23
//
Query:       CTQ27988.1  [L=129]
Description: gamma-carboxymuconolactone decarboxylase (CMD) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-24   83.7   0.1      1e-23   83.2   0.1    1.2  1  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.1   5.6e-28     1e-23       2      84 ..      36     118 ..      35     119 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 5.6e-28
                 HHHHHHHHHHHHHCC.GSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHH CS
         CMD   2 ellraltalrealla.reggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaae 84 
                 e+++++t++++++ + r+g Ld+ +r++i++a+++a+++e ++++H+ra+ ++Gvt++e++e++++ a y+g paa+a +++a+
  CTQ27988.1  36 EFQDFITRYAWGETWtRPG-LDHHTRSMITIAMLIALNREAELKMHLRASFNNGVTRDELKELIMHSALYCGLPAANATMHLAQ 118
                 799************9988.*********************99*************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.53
# Mc/sec: 737.75
//
Query:       CTQ27989.1  [L=538]
Description: Transporter, small conductance mechanosensitive ion channel (MscS) family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-28   98.4   0.1    6.6e-28   97.7   0.1    1.4  1  MS_channel  Mechanosensitive ion channel


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.1   3.7e-32   6.6e-28       3     206 .]     304     505 ..     302     505 .. 0.92

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 3.7e-32
                 HHHHHHHHHHHHHHHHTTT--.SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEHHH CS
  MS_channel   3 ilkiliivvgilivlsllgvn.vsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveigdieGtVediglrttkirtfdgrivtiPnss 100
                 +++++i+++++ ++  +l      a+  +  + gl l+l++  +    ++G++l+++++++ GD+++++d eG+V +ig ++tki t+++ ivt+Pn  
  CTQ27989.1 304 LISVVIWLFALSAAYPFLPGAnSLAFKGISVFFGLMLTLGSTGVMTHAMSGLVLIYSRALRKGDWIRLADNEGQVSEIGVLATKILTRENYIVTVPNAV 402
                 6788999999999998885543889999999******************************************************************** PP

                 HHTS-EEESSS...SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-TTS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHH CS
  MS_channel 101 lvtsnieNlsr..esgtrrikvsigvtyssdvkklekvleelkealkekpevlkdkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikk 197
                 +v+ +i+Nls    +g++ +++s+++ y+++   +++v   l  a++++p ++++ ++ v+ + + d+++++e++v + +    +  + +++++ +i++
  CTQ27989.1 403 VVSGKIINLSAesVDGGVNLTTSVTIGYDTP---WRQVHALLELAARRTPGIDQQIAPVVRKLGLLDWYTSYELQVRLLP--TTKLPDGRNALHSSIID 496
                 ***********65567777777777777777...******************************************9999..89*************** PP

                 HHHHHT--- CS
  MS_channel 198 ileeegiei 206
                 +++e+g++i
  CTQ27989.1 497 VFNEFGVQI 505
                 ******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3698.18
//
Query:       CTQ27990.1  [L=550]
Description: anaerobic class I fumarate hydratase (fumarase B) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-88  294.6   0.0    4.6e-88  293.9   0.0    1.4  1  Fumerase_C   Fumarase C-terminus
    6.4e-86  288.1   0.0    8.4e-86  287.7   0.0    1.1  1  Fumerase     Fumarate hydratase (Fumerase)
  ------ inclusion threshold ------
      0.062   11.5   0.0       0.11   10.7   0.0    1.3  1  Myosin_head  Myosin head (motor domain)
       0.15   11.8   0.0       0.29   10.8   0.0    1.4  1  LolA         Outer membrane lipoprotein carrier protein LolA


Domain annotation for each model (and alignments):
>> Fumerase_C  Fumarase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.9   0.0     1e-91   4.6e-88       1     205 [.     332     537 ..     332     538 .. 0.99

  Alignments for each domain:
  == domain 1  score: 293.9 bits;  conditional E-value: 1e-91
  Fumerase_C   1 GvflekleeepakllpeveekekkeeavevdLnq..keteeelskykvgtrlllsGkllvaRDaaHkrlkerlekgeelpeyvklkdrviYyaGPvktp 97 
                 G+++ekle++p k++pe+ +++ + ++v+++Lnq  +e++++ls+++v+trl+l+G+++vaRD+aH++lke +++ge lp+yvk  d++iYyaGP+ktp
  CTQ27990.1 332 GIWIEKLESNPGKYIPEHLRQAGEGKVVSINLNQpmSEILAQLSAHPVSTRLSLNGTIIVARDIAHAKLKELIDNGEALPQYVK--DHPIYYAGPAKTP 428
                 89***************99999999*********999***********************************************..************* PP

  Fumerase_C  98 edeavgsaGPTTatRmdkyvekllkktgllimlaKgnrskkvleaikkhggvYLgaiGG.aAilakkaikkvevvefeelGmEAiyeievedfpafvvv 195
                  ++a+gs+GPTTa+Rmd+yv+ l++++++++mlaKgnrs++v++a++khgg+YLg+iGG aA+la+++ik+ e+v+++elGmEAi++ievedfpaf++v
  CTQ27990.1 429 AGYASGSLGPTTAGRMDSYVDLLQSHGASMVMLAKGNRSQQVTDACHKHGGFYLGSIGGpAAVLAQQSIKSLECVAYPELGMEAIWKIEVEDFPAFILV 527
                 *************************************************************************************************** PP

  Fumerase_C 196 ddkGndlfke 205
                 ddkGnd+f++
  CTQ27990.1 528 DDKGNDFFQQ 537
                 ********98 PP

>> Fumerase  Fumarate hydratase (Fumerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.7   0.0   1.9e-89   8.4e-86       4     269 ..      51     326 ..      48     327 .. 0.94

  Alignments for each domain:
  == domain 1  score: 287.7 bits;  conditional E-value: 1.9e-89
    Fumerase   4 veealkeastelpedvlealkkalek.EesenakevleqlleNaeiAaeeklplCqDTGiavvfvkigeevevetgdleeaineGvreaykegplRksv 101
                 +++a+++a++ l+ +++++++++l + E+s+n+k+v+ q+l+N+eiAa++ lp CqDTG+a++++k+g++v+ ++g  e+a+++Gv+++y+e +lR+s+
  CTQ27990.1  51 AQQAFHDAAFMLRVSHQQQVASILLDpEASDNDKYVALQFLRNSEIAAKGVLPTCQDTGTAIIMGKKGQRVW-TGGGDEAALAQGVYNTYTEDNLRYSQ 148
                 789*********************999********************************************9.77788888****************** PP

    Fumerase 102 vadp.l.erkntgdnlPavihielvpgdeleitvlakGgGsenksklk.....mlnpsdglegvkkfvletvkeagtnaCpPlvlgvgiGgtseeaall 193
                  a+  + +++ntg+nlPa+i+++ v+g+e++++++akGgGs+nk++l+     +++p    +++k++++e+++++gt+aCpP++++ +iGgts+ea+l+
  CTQ27990.1 149 NAPLdMyKEVNTGTNLPAQIDLYSVDGEEYKFLCMAKGGGSANKTYLYqetkaLITP----AKLKNYLVEKMRTLGTAACPPYHIAFVIGGTSAEATLK 243
                 *999*99*****************************************888877788....78************************************ PP

    Fumerase 194 akk.al...lrelgeenpdee.....laeleeellekinklgiGpqGlGGkttvldvkierlprhiAslpvavnvsCsadRrakv 269
                 ++k a+   ++ l++e+ +e+     + +le+ell+++++lg+G+q +GGk++++d++++rlprh+As+p++++vsCsadR++k+
  CTQ27990.1 244 TVKlAStryYDGLPTEG-NEHgqafrDVQLEQELLQEAQNLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPIGMGVSCSADRNIKA 326
                 ***99977777777777.444467779*******************.***********************************997 PP

>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.5e-05      0.11     163     250 ..     200     286 ..     194     295 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.5e-05
                  TSSEEEEEEEEECE-GGGGT---TT--SBHHHHHHHHCSTHHHHHHTT--TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT-- CS
  Myosin_head 163 kgkiagakietYLLEksRvvkqakeERnyHiFYqllagaseeekkelkledvkdyaylsqsgeltvdgiddseefketkkaldilgls 250
                  k+ i+ ak+++YL+Ek R +  a+    yHi + +   ++e + k++kl ++++y  l ++g+ + ++  d++  +e+ +  + lgl 
   CTQ27990.1 200 KALITPAKLKNYLVEKMRTLGTAA-CPPYHIAFVIGGTSAEATLKTVKLASTRYYDGLPTEGNEHGQAFRDVQLEQELLQEAQNLGLG 286
                  567889************998765.679********999*******************999999999999999888888877878875 PP

>> LolA  Outer membrane lipoprotein carrier protein LolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.4e-05      0.29      62     132 ..      35      97 ..      22     107 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.4e-05
                 TTTEEEEEEHHHHTTT-GGGGGGS-HHHHTTTEEEEEEEETTEEEEEEEESSS-SSECEEEEEE.ETTEEE CS
        LolA  62 dleqvtieslkqalsktplvlLledkaklskdynvsvkkeqdldtltlkpkakdanlsritigfdkkgllk 132
                 d +qv       +++ + l lL+ ++a ++  + + v+++q++  + l+p+ ++ n + + ++f ++++++
  CTQ27990.1  35 DGQQV------LKVEPQALTLLA-QQAFHDAAFMLRVSHQQQVASILLDPE-ASDNDKYVALQFLRNSEIA 97 
                 55555......566777777777.999************************.9999********9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3952.32
//
Query:       CTQ27991.1  [L=503]
Description: putative tartrate:succinate antiporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.1e-150  500.6  40.9   5.9e-150  500.4  40.9    1.0  1  Na_sulph_symp  Sodium:sulfate symporter transmembrane region
    3.4e-10   39.6  38.1    3.4e-10   39.6  38.1    3.1  3  CitMHS         Citrate transporter
  ------ inclusion threshold ------
        3.7    7.9  11.5        0.2   11.9   0.5    3.5  3  DUF4181        Domain of unknown function (DUF4181)


Domain annotation for each model (and alignments):
>> Na_sulph_symp  Sodium:sulfate symporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.4  40.9  9.8e-154  5.9e-150       6     469 ..      26     502 ..      21     503 .] 0.98

  Alignments for each domain:
  == domain 1  score: 500.4 bits;  conditional E-value: 9.8e-154
  Na_sulph_symp   6 klllllvvlliilllPapdgleskawrllaifiaaivglileplplavialialsllavligvla..............akalsevlsgfssdttl 87 
                     + l+++v + +l++P+p+gl++ aw+++aif+ +ivgli eplp avi + ++ ++a+ +++l                 + ++++sgf ++t++
     CTQ27991.1  26 MMALPIIVAVLLLFVPVPEGLPPYAWHYFAIFVGVIVGLIFEPLPGAVIGITGVVVIALCSQWLLfspdqmaapgfkmaGASFKWAVSGFGNSTVW 121
                    56788999999*****************************************************************998899************** PP

  Na_sulph_symp  88 LvfaalliaaavektgLgkRiAlvlvkivGkrtliLgyalvladlllapatpsntAraggivfpvikslssafgsepekqserkigaylmltvvqs 183
                    L+f+a+++aa++ kt  g+R+Al+lvk +G r l+Lgya+ +adlllap+tpsntAr+gg+++p+i +l++++gs+p++ s+rkig+ylm++++ +
     CTQ27991.1 122 LIFGAFMFAAGYDKTQFGRRLALILVKYLGRRSLTLGYAITFADLLLAPFTPSNTARSGGTIYPIIANLPPLYGSKPNDPSARKIGSYLMWVAITA 217
                    ************************************************************************************************ PP

  Na_sulph_symp 184 asitsiaflTamApNllllglinsilgveitwasWflaaiptgvillllvplllyvlyppeikkkeeakavaktelkelGpltarekallilfvll 279
                    a+its++fl a ApNll+l+l++si g++i+w+ Wf+a++p+g++l+l +pll+y++yppe+k  +e+  +a +el++lG l+++e  ll+ +  +
     CTQ27991.1 218 ACITSSMFLSALAPNLLALALVKSIVGINISWGTWFIAFLPLGILLILAMPLLAYWFYPPEVKVNNEVPLWAARELEKLGKLSRNEILLLVFVCFA 313
                    ************************************************************************************************ PP

  Na_sulph_symp 280 lllWifgeslnidattvaivvlvillllrvldWkDivkqktaWntllllgglialakllersgliewlgnklttslsglspavaiiiilslfvlvh 375
                    l++Wif  +  i+ +  a++v+v++l + vl+W Di+++k+aWnt++++++l+ala +l+ +g+i wlg+    ++sg+sp +a i++l++f+l+h
     CTQ27991.1 314 LMMWIFAADW-IEPALAALLVIVLMLWTGVLSWSDITNNKAAWNTFVWFATLVALADGLSSTGFIAWLGKEGGALMSGISPGMATIVLLLAFYLLH 408
                    **********.************************************************************************************* PP

  Na_sulph_symp 376 ylfaSatAttaallpillavaqaipgappllvalllalatslagfllpyatgpnpivfgagylkvkdywrlGfilsiigllillllgalwwklL 469
                    ylfaS tA+t+allp +l++a +ipg+++++++ll++ + +++g+++py+tgp+pi++g+gyl++kdywrlG i++ i+l+ lll+g  w  ++
     CTQ27991.1 409 YLFASTTAHTTALLPAMLTIASTIPGMNMEVFVLLMVTSLGVMGIITPYGTGPSPIYYGSGYLPTKDYWRLGTIFGAIFLAALLLIGYPWMSMM 502
                    ***************************************************************************************9987765 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   7.8       2.4   1.4e+04     111     162 ..      21      69 ..      11      91 .. 0.48
   2 !   39.6  38.1   5.7e-14   3.4e-10       2     267 ..      62     413 ..      61     420 .. 0.65
   3 !    7.6  14.3   0.00031       1.8      84     165 ..     407     494 ..     388     503 .] 0.75

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 2.4
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxx....x RF
      CitMHS 111 klppl.lliplalaaniggaltpiGtpttraaarpglslpnlll....lalllvgl....l 162
                 k+p+l +++p+++a  +  + +p G p            p+ +      + ++vgl    l
  CTQ27991.1  21 KKPLLmMALPIIVAVLLLFVPVPEGLP------------PYAWHyfaiFVGVIVGLifepL 69 
                 344445777777777777777777888............3333311112222222223332 PP

  == domain 2  score: 39.6 bits;  conditional E-value: 5.7e-14
                 xxxxxxxxxxxxxxxxxxxxx.......xxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
      CitMHS   2 vllileklrldvvallvlvll.......vltiee...............alsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvl 77 
                 v li+e l+ +v+ + ++v+        ++++++               a+sg+++++++l++ga++++a+ ++t + +rla  l++  g++   l  +
  CTQ27991.1  62 VGLIFEPLPGAVIGITGVVVIalcsqwlLFSPDQmaapgfkmagasfkwAVSGFGNSTVWLIFGAFMFAAGYDKTQFGRRLALILVKYLGRRSLtLGYA 160
                 5678888777777776666656678888555555666666666677777*****************************************977777777 PP

                 xxxxxxxxxxxxxxxxx...............................xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  78 lvlltallsafvsndgv...............................vlimipivlslakrlkklppl...lliplalaaniggaltpiGtpttraaa 142
                 + ++  ll++f   +++                                l+ ++i+ +   + +++  +    l++lal  +i g+ + +Gt       
  CTQ27991.1 161 ITFADLLLAPFTPSNTArsggtiypiianlpplygskpndpsarkigsYLMWVAITAACITS-SMFLSAlapNLLALALVKSIVGINISWGTW------ 252
                 ************998888*9885555555555555555555555555433333333333332.333333344334455555555666666666...... PP

                 xxxxxxxxxxxxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
      CitMHS 143 rpglslpnllllalllvgl.................................lplvllfmfgvalalpvnapkvkkqkaiieaiarsllpvatillla. 207
                  ++ +lp ++ll+l++ +l                                 + l+++++f+++  ++ +                +++p+ ++ll++ 
  CTQ27991.1 253 -FIAFLPLGILLILAMPLLaywfyppevkvnnevplwaareleklgklsrneILLLVFVCFALMMWIFAA---------------DWIEPALAALLVIv 335
                 .999999999987777766666666666666666666666666666666666444444444444444333...............33443333332223 PP

                 ..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x.xxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 208 ..............ykkveWsvlllfaGvfllvgaleqtGilealadllga.....g.gplvalalvlgliallsafisn 267
                                +k  W+++++fa ++ l+++l+ tG + +l++  ga     + g+++  +++l+++ ll+ ++ +
  CTQ27991.1 336 lmlwtgvlswsditNNKAAWNTFVWFATLVALADGLSSTGFIAWLGKEGGAlmsgiSpGMAT--IVLLLAFYLLHYLFAS 413
                 446899*******9**************************9999997775555433222222..2333333334444444 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00031
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  84 llsafvsndgvvlimipivlslakrlkklppl.lliplalaaniggaltpiGtpttraa.....arpglslpnllllalllvgllplv 165
                 l   f+s+++ +  ++p++l++a  + ++++  ++++++++ +++g++tp Gt + +        + + ++  + + ++++ ++l l+
  CTQ27991.1 407 LHYLFASTTAHTTALLPAMLTIASTIPGMNMEvFVLLMVTSLGVMGIITPYGTGPSPIYygsgyLPTKDYWRLGTIFGAIFLAALLLI 494
                 33345666666999************99999999999*****************8888899999888888888888666665443333 PP

>> DUF4181  Domain of unknown function (DUF4181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.6      0.54   3.2e+03      41      71 ..      31      61 ..      17      67 .. 0.45
   2 ?   11.9   0.5   3.4e-05       0.2      36     102 ..     304     366 ..     279     370 .. 0.79
   3 ?    1.6   0.3     0.055   3.3e+02      40      74 ..     399     431 ..     389     438 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.54
     DUF4181 41 lfiifiilsliiilsreyvdiiilifvflvv 71
                +++ +++l + ++   ++  + ++++++ v+
  CTQ27991.1 31 IIVAVLLLFVPVPEGLPPYAWHYFAIFVGVI 61
                3333333333333333444444443333333 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.4e-05
     DUF4181  36 lilrvlfiifiilsliiilsreyvdiiilifvflvvlelfRavmewkyereskrYilslaaailfli 102
                 +   ++f+ f ++++i+   +      +l++++++vl l  +v+ w  + + k+   ++++ ++++ 
  CTQ27991.1 304 IL-LLVFVCFALMMWIFAADWIEP---ALAALLVIVLMLWTGVLSWSDITNNKAAWNTFVWFATLVA 366
                 33.346777777777777765555...5789999999************************999875 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.055
     DUF4181  40 vlfiifiilsliiilsreyvdiiilifvflvvlel 74 
                 vl+  f +l++++  ++ +++  +l++ +l++ ++
  CTQ27991.1 399 VLLLAFYLLHYLFASTTAHTT--ALLPAMLTIAST 431
                 388899999999999999988..667777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       988  (0.0551063); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 3586.56
//
Query:       CTQ27992.1  [L=65]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 555.18
//
Query:       CTQ27993.1  [L=925]
Description: Fumarate reductase flavoprotein subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-87  293.6   8.5    4.2e-87  292.9   8.5    1.3  1  FAD_binding_2  FAD binding domain
    7.4e-73  245.8   0.0    1.3e-72  245.0   0.0    1.4  1  Oxidored_FMN   NADH:flavin oxidoreductase / NADH oxidase fami
    2.4e-15   56.8   1.3    4.4e-15   56.0   1.3    1.4  1  FAD_oxidored   FAD dependent oxidoreductase
    4.7e-12   46.2   1.5    3.2e-10   40.1   0.5    2.8  2  DAO            FAD dependent oxidoreductase
    1.5e-10   40.3   2.5    1.5e-10   40.3   2.5    2.3  2  HI0933_like    HI0933-like protein
    1.1e-08   34.7   5.6    3.1e-05   23.3   0.7    2.4  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    2.8e-06   27.8   1.3      0.041   14.5   0.6    2.9  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    3.5e-06   27.1   0.2    1.1e-05   25.6   0.2    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    3.7e-06   27.4   0.9    2.5e-05   24.7   0.4    2.6  2  FMN_bind       FMN-binding domain
    7.5e-06   25.3   5.3    0.00079   18.6   1.5    2.4  2  GIDA           Glucose inhibited division protein A
      2e-05   24.0   0.4    4.4e-05   22.9   0.4    1.5  1  FAD_binding_3  FAD binding domain
    3.2e-05   23.3   1.0     0.0056   16.0   0.3    2.3  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0069   15.7   0.9     0.0069   15.7   0.9    3.3  3  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.011   14.6   0.7        1.3    7.7   0.0    2.1  2  MCRA           MCRA family
      0.024   13.9   0.9        1.4    8.1   0.0    2.3  2  Amino_oxidase  Flavin containing amine oxidoreductase
      0.026   13.8   0.0      0.076   12.2   0.0    1.8  1  DHO_dh         Dihydroorotate dehydrogenase
       0.13   11.3   1.4       0.24   10.4   1.4    1.4  1  Lycopene_cycl  Lycopene cyclase protein
       0.57   10.7   3.7        5.4    7.6   2.3    3.0  2  Ribosomal_S9   Ribosomal protein S9/S16


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.9   8.5   4.3e-90   4.2e-87       1     417 []     483     905 ..     483     905 .. 0.95

  Alignments for each domain:
  == domain 1  score: 292.9 bits;  conditional E-value: 4.3e-90
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    Dv+V+GsG+AGLaAA++a+++G++v++vek++  gg+t  +++g++a+ ++ q+ +gi+ds el  ++tlk++++ ++++l + fve+ap+a+++L
     CTQ27993.1 483 DVVVVGSGGAGLAAAIQAHDEGASVLIVEKMPTIGGNTIKASAGMNAAETRFQRVKGIEDSKELFYQETLKGGHNKNNPQLLRRFVENAPQAIEWL 578
                    9*********************************************************************************************** PP

                    HHTT----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEE.EEE CS
  FAD_binding_2  97 eelgvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrev.rir 191
                    ++ g++++        ++  Gg+s + rt++       +  + g  l+  lv+++ k+g+d++  t+++e+++++++v+G+ +   ++++ev +++
     CTQ27993.1 579 ADRGIMLND-------ITTTGGMSID-RTHR-PR----DGSAVGGYLISGLVRNITKRGIDVLLDTSVEEILMRGDEVSGVRLI--NDEKEViEVQ 659
                    *********.......**********.8888.22....34578999**************************************..4444443799 PP

                    ESEEEE-----GG............GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT-EEE-TTSSBT CS
  FAD_binding_2 192 akavvlatgGfgr..allkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgilvdkdGrrF 285
                     k +v+atgGf++  a++ ++++ +  + ttn +++tG g+al +r ga   d  m e+q+hPt       ++  Li+e +rg G+ilv+++G+rF
     CTQ27993.1 660 TKSIVVATGGFSAnsAMVVKYRPDLEGFVTTNHKGATGSGIALLERIGAGTVD--MGEIQIHPTVEQ----QTSYLISESIRGGGAILVNQQGNRF 749
                    99************************************************999..***********9....9999********************* PP

                    HGGGS-HHHHHHHHH.HHHHTTTSCCBEEEE-TT................................SSHHHHHHHSHHHHHHHHHCCT......S- CS
  FAD_binding_2 286 mnelasrdvvsrailekeiaeggseanvyldash...............................gldaegleatleaineeaangldkdfgrgid 350
                     ne+++rd vs+ai+    a +++  + y++++                                g+d +++ atle +n +++++ d++fgr++ 
     CTQ27993.1 750 FNEMETRDKVSAAII----ALPEH--YAYIVFDEhvraknkaadeyiakgfvtsassprelaeklGMDYHAFLATLECYNGAVEKQHDEQFGRTTA 839
                    ***************....55555..66888888899999*****************************************************999 PP

                    TTTSEEE.......EEEEEEEES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 351 padrpipgpfyavkvvpaqhytmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                     ++  + gpf+a+++ p++h tmgGv+++++g+vl+ ++qpi G YAaGev  gg+hg nr gGn +
     CTQ27993.1 840 LRAPINEGPFHAIRIAPGVHHTMGGVTINTDGEVLNVAQQPIRGAYAAGEVV-GGIHGGNRIGGNAV 905
                    9999888*********************************************.************76 PP

>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.0   0.0   1.3e-75   1.3e-72       2     341 ..       7     341 ..       6     342 .. 0.89

  Alignments for each domain:
  == domain 1  score: 245.0 bits;  conditional E-value: 1.3e-75
                   CCS-EEETT.EEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEE CS
  Oxidored_FMN   2 LFkPikign.mtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvv 97 
                   + +P+++ n ++LknR++mapmt   ++ +g+v+   ++eyy+ ra   ++ ii+e++f++  + +f++a gi ++e+i++++k++ea++++gsk++
    CTQ27993.1   7 ILQPFTLPNgTELKNRLLMAPMTTCTGYFDGTVTS-ELVEYYRARAG-SIGTIIVECCFIDDYGLAFPGAIGIDNDEKIAGLAKIAEAIKAEGSKAI 101
                   569******9*********************8877.99********9.89999******************************************** PP

                   EEEE--GGGS..SCSTCEC..SS.ESSSSSTTT-.S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT----STT CS
  Oxidored_FMN  98 vqlwhlGreakseyladqevdspsdpvaldaqeeesaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksnkrtDey 194
                   +q++h+Gr +  +     +   p +p+a+ a+ e  +  + +++l+ ee++ +i +f +  +rai AgfDgVeihgan YL++qF+sp+sn+r De+
    CTQ27993.1 102 LQIYHGGRMVDPQLIGGRQ---PVAPSAIAAPRE--GAAM-PRALSGEEVEGMIAKFGDGVRRAILAGFDGVEIHGANTYLIQQFYSPNSNQRDDEW 192
                   **********777766666...888889999955..4444.67****************************************************** PP

                   SSSHHHHHHHHHHHHHHHHHHH-SSS.....EEEEEECE--STTS--HHHHHHHHHHHCHCCEEEEEEETT-SSSSSTTS-TT.TTHHHCCTTHHHH CS
  Oxidored_FMN 195 gGslenRarFllevvdaVkeavgeer.....vgyRlSpedvvekgldfaetaqkivllkelekrlkdgkklalvhaaeprkrg.agsvrteqeknte 285
                   gGs +nRarF+l+v+d   + + + +     +gyR+Spe++  +g+ f +t   ++ll++l+ r  d+ + ++     p   + ++++   ++  + 
    CTQ27993.1 193 GGSRDNRARFPLAVLDITHKMARQYAddafiIGYRFSPEEMEVPGIRFDDT---MYLLEKLAARGVDYLHFSVGATLRPSIVDtSDPTPLIEKYCAM 286
                   ***************966655544335559*********************...9999999999999999998866666555405555555457778 PP

                   HHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCG CS
  Oxidored_FMN 286 fvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpl 341
                       ++++p+++vg+  ++  +ae+      dL+a+gR+ +a pd++++++ g +l
    CTQ27993.1 287 RSDTLAQVPVMGVGGVVNAA-DAEQGLDHGYDLIAVGRACIAYPDWASRIAAGEEL 341
                   88999*************99.7888888889*******************998765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   1.3   4.4e-18   4.4e-15       1     144 [.     483     668 ..     483     681 .. 0.77

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 4.4e-18
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaee...qvvtgiareflerlrqrgga...........rlkkrskwn. 82 
                   DvvVvG+g aG+aAAi+A  +Ga+vl+ve+ + +GG++ ++  ++    + +    + ++   + f+++  + g+            +       n 
    CTQ27993.1 483 DVVVVGSGGAGLAAAIQAHDEGASVLIVEKMPTIGGNTIKASAGMNAAET-RFqrvKGIEDSKELFYQETLKGGHNknnpqllrrfvE-------Na 571
                   9************************************9866543333322.2211344444555677777663222333333332221.......14 PP

  FAD_oxidored  83 ...........................tfepevakavleeml.......aeagvtvllntrlvevekegkriesvtveske.grktirAkvfiDATg 144
                                              t+ p+   av   ++       ++ g++vll+t ++e+ ++g+++ +v++ ++e + ++++ k ++ ATg
    CTQ27993.1 572 pqaiewladrgimlnditttggmsidrTHRPRDGSAVGGYLIsglvrniTKRGIDVLLDTSVEEILMRGDEVSGVRLINDEkEVIEVQTKSIVVATG 668
                   5556666788999999999999999999999988888777777778*99999*****************9********99956*********99997 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.6   2.6e+03     250     320 ..     209     281 ..     184     311 .. 0.58
   2 !   40.1   0.5   3.2e-13   3.2e-10       1     209 [.     483     676 ..     483     696 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.6
                 TTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGGGCGEEEEEEEEEE....ETTSSEEEE CS
         DAO 250 grgvyvtprkdgrvlvGgtadeesgdddpevdeedidellealrklfPqlgdvlrkwaGlrp....lpdglplig 320
                  ++  +++++d+ +++G   ++e+  ++p +  +d  +lle+l+++  +  +++   + lrp    + d  pli 
  CTQ27993.1 209 ITHKMARQYADDAFIIGYRFSPEE-MEVPGIRFDDTMYLLEKLAARGVDYLHFSVGAT-LRPsivdTSDPTPLIE 281
                 455566677777777776552222.333466666666666666655544333333333.6664221234466655 PP

  == domain 2  score: 40.1 bits;  conditional E-value: 3.2e-13
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHH.HHHHHHHSSTTSEEEEEEEEEESSHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeel.releeelgididyrrtGllslaadeeel 96 
                 dvv++G+G +Gl++A ++  +g  V+++ek + +g g + ++s+   ++   ++     ++  +++ e++ +e  +  g++    ++ ll  +  e+  
  CTQ27993.1 483 DVVVVGSGGAGLAAAIQAHDEGasVLIVEKMPTIG-GNTIKASAGMNAAETRFQ----RVKGIEDSKELFyQETLKG-GHN--KNNPQLLRRF-VENAP 572
                 9*****************87799************.776666666666332244....3377777777776444443.432..3333333333.22223 PP

                 HHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTS.EEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE..EECTEEE.E CS
         DAO  97 ealdkllallleagldaelldaeevrelepalpgll.galfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve..rttpgen.d 191
                 +a+ ++la+    g+   +l+      +   + g      + p +g +    l+ +l r + ++G+++l+ t v+++  +++ v+gv+  +++++ + +
  CTQ27993.1 573 QAI-EWLAD---RGI---MLND-----ITT-TGGMSiDRTHRPRDGSAVGGYLISGLVRNITKRGIDVLLDTSVEEILMRGDEVSGVRliNDEKEVIeV 658
                 334.44544...455...4433.....332.11222245788999***999*************************96677889999998666554434 PP

                 EEEEEEE--GGGHHHHHT CS
         DAO 192 aadavVnaaGawsdllgl 209
                 + + +V+a+G +s  +++
  CTQ27993.1 659 QTKSIVVATGGFSANSAM 676
                 4466********974433 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   2.5   1.5e-13   1.5e-10       1     167 [.     482     672 ..     482     675 .. 0.71
   2 ?   -1.8   0.3      0.98   9.7e+02     356     385 ..     861     891 ..     857     900 .. 0.69

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.5e-13
                  -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETT........-SGGGEEES...STTT..THHHHHHS-HH..HHHHHH CS
  HI0933_like   1 kdviviGgGaAGlmaAisaakrgkrVlllekakklgrKilisGgGrcNvTnls........eepeellsrypenpkf..lksalsrftne..dlialv 86 
                  +dv+v+G G AGl aAi+a+++g++Vl++ek++++g     +  G +N   ++         ++e + ++  ++++     + l+rf ++  + i+++
   CTQ27993.1 482 YDVVVVGSGGAGLAAAIQAHDEGASVLIVEKMPTIGGNTIKASAG-MNAAETRfqrvkgieDSKELFYQETLKGGHNknNPQLLRRFVENapQAIEWL 578
                  59*********************************8765555554.56555431111111144555666655554440044679***7653379**** PP

                  HHTT--EE.E-STTEEE......ETT.-CH..HHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE..TTE...EEEESEEEE----SS- CS
  HI0933_like  87 eelgvelk.eedsgrlF......pvsdkae..divdallkelkeagvklrletevksvekeedgkfrvkt.ksee...eleadklvlAtGGlSi 167
                  +++g+ l+ + + g +       p++ +a    +++ l+++++++g+++ l+t+v+++  + d++  v++ ++e+   e++++++v+AtGG S+
   CTQ27993.1 579 ADRGIMLNdITTTGGMSidrthrPRDGSAVggYLISGLVRNITKRGIDVLLDTSVEEILMRGDEVSGVRLiNDEKeviEVQTKSIVVATGGFSA 672
                  *****99733455555411111355555533369************************999999999998754442446899*********997 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.98
                  EEEEE-GGGB-TTT-B..BTTSTTEEE-GGGB CS
  HI0933_like 356 TaGGVdlkevssktme..skkvpgLffaGEvl 385
                  T+GGV+++  + + ++   + + g + aGEv+
   CTQ27993.1 861 TMGGVTINT-DGEVLNvaQQPIRGAYAAGEVV 891
                  999999875.55555400556789******96 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.7   3.1e-08   3.1e-05       1      52 [.     482     533 ..     482     580 .. 0.75
   2 !   12.9   0.4   4.6e-05     0.046     191     266 ..     618     696 ..     596     699 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.1e-08
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaed 52 
                  +dvvv+G+G AGlaaa+++   ga v++ve+  t+ ++++  s  + +++ +
   CTQ27993.1 482 YDVVVVGSGGAGLAAAIQAHDEGASVLIVEKMPTIGGNTIKASAGMNAAETR 533
                  69***************************76666555555444444444444 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.6e-05
                  HHHHHTTEEEEESCEEEEEEETTE...EEEEEETTSCE..EEESEEEE-S.-EEES-HHCSHCCT-EEEETTEEE--TTSBE CS
                  xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx..xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 191 ealekeGvevklgtsvkeidgnge...klevvledgee..idadlvvvav.Gvrpstelleeklglelderggivvdeflrt 266
                  + ++k+G++v l tsv+ei  +g+    ++++++++e+  ++++ +vva+ G++++++ +  k    l   g++ ++++++t
   CTQ27993.1 618 RNITKRGIDVLLDTSVEEILMRGDevsGVRLINDEKEVieVQTKSIVVATgGFSANSAMV-VKYRPDL--EGFVTTNHKGAT 696
                  56899**************99999656666888888876677788999996677777655.3333333..666666666655 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.6   4.1e-05     0.041       2      36 ..     484     519 ..     483     541 .. 0.85
   2 !   10.9   0.0   0.00054      0.53      42      78 ..     612     648 ..     596     652 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.1e-05
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.T CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll.r 36 
                 vvvvG+G  gl +A  +++ g++V +ve ++++  +
  CTQ27993.1 484 VVVVGSGGAGLAAAIQAHDEGASVLIVEKMPTIGgN 519
                 8******************************99844 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00054
                 HHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  42 askilqeklekngievllntkveeiegsedgvesvkl 78 
                 + + l ++++k+gi+vll+t+veei   +d+v++v+l
  CTQ27993.1 612 LISGLVRNITKRGIDVLLDTSVEEILMRGDEVSGVRL 648
                 556678999********************99*99997 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.2   1.1e-08   1.1e-05       1      54 [.     486     539 ..     486     548 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.1e-08
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS---EEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahifhg 54 
                    +vG+G +Gl+aA  ++++g++vl++ek + +GG+   ++ + +++++  + ++g
     CTQ27993.1 486 VVGSGGAGLAAAIQAHDEGASVLIVEKMPTIGGNTIKASAGMNAAETRFQRVKG 539
                    8********************************987776665565655555555 PP

>> FMN_bind  FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.8   5.8e+03       8      23 ..      73      87 ..      67     103 .. 0.81
   2 !   24.7   0.4   2.5e-08   2.5e-05       8      68 ..     397     461 ..     392     461 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.8
                EEEEEETTTSBEEEEE CS
    FMN_bind  8 vlvtvkdgdgtItgie 23
                +++++ d+d++I+g+ 
  CTQ27993.1 73 GAIGI-DNDEKIAGLA 87
                67999.87999*9975 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 2.5e-08
                 EEEEEETTTSBEEEEEEEESS.S-TTTGGG.......CTTHHHH.....SSEEETCTTBHHHHHHHHHHHHHHH CS
    FMN_bind   8 vlvtvkdgdgtItgievlehs.ETpglgsk.......avkkdgg.....dqevDaiSGATissravkdavnaal 68 
                 + v+++++   I++ie+      T ++  +       +     +     + +vDaiSGAT  s+avk+av +a+
  CTQ27993.1 397 INVSLEND--HIADIELAASPvQTVEF--TtsfeeirE-----RiltanTPHVDAISGATSQSEAVKKAVAKAM 461
                 56777553..58888884221122222..022222221.....133334568******************9995 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   1.5   7.9e-07   0.00079       1      47 [.     483     528 ..     483     538 .. 0.84
   2 !    7.6   0.1    0.0018       1.7     114     160 ..     629     679 ..     617     695 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.9e-07
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEE-T CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkldtiaelsCnpsiggi 47 
                 dv+V+G G AG++AA++a   Ga+vl++ +k+ ti+      s g +
  CTQ27993.1 483 DVVVVGSGGAGLAAAIQAHDEGASVLIV-EKMPTIGGNTIKASAGMN 528
                 79**********************9888.888888876666666555 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0018
                 EES-EEEEEECTTEEEEEEETTS-....EEEECEEEE--TT-BT-EEEETT CS
        GIDA 114 ieeeveeliveekkvkgvvtedge....tikakavviatGtflkgkihige 160
                 +  +vee++++ ++v+gv++ ++e    ++++k++v+atG f++ + ++ +
  CTQ27993.1 629 LDTSVEEILMRGDEVSGVRLINDEkeviEVQTKSIVVATGGFSANSAMVVK 679
                 567899**9*99*****9875544222246788*********998887755 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.4   4.4e-08   4.4e-05       2     167 ..     482     672 ..     481     690 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.4e-08
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS..S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE................ CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp..radglnqrtmellrqlGledrilaegapnelmgealyne................ 79 
                    +dV++VG+G aGl +a   +  G +v++vek+ t   ++   + g+n    +  r  G+ed+ +   +     g++ +n+                
     CTQ27993.1 482 YDVVVVGSGGAGLAAAIQAHDEGASVLIVEKMPTIGGNTikASAGMNAAETRFQRVKGIEDSKELFYQETLKGGHNKNNPqllrrfvenapqaiew 577
                    69********************************99888844578999999999999**9986655544444455555559999999999999999 PP

                    .......CCCC.CEEEEEHHCHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-H CS
  FAD_binding_3  80 .......lsdt.pkaradlelesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrSt 167
                           l+d+       ++   +p++ ++++  +l   Lv + ++rg++v  +t ve ++  +++v+ + + +++ e  +v+ k +v a Gg S+
     CTQ27993.1 578 ladrgimLNDItTTGGMSIDRTHRPRDGSAVGG-YLISGLVRNITKRGIDVLLDTSVEEILMRGDEVSGVRLINDEKEVIEVQTKSIVVATGGFSA 672
                    766666656655555555555566666666664.6667777788999*******************999999777777779999999999998775 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.3   5.6e-06    0.0056       1      33 [.     485     517 ..     485     548 .. 0.88
   2 !    5.6   0.0     0.008         8      93     145 ..     622     680 ..     615     694 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.6e-06
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkg.nig 33 
                  +++G G aGlaaai++ + g  ++li+Ek  +ig
   CTQ27993.1 485 VVVGSGGAGLAAAIQAHDEGA-SVLIVEKMpTIG 517
                  79*******************.8******85554 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.008
  Pyr_redox_3  93 sfelpiklfeeVesvkkedeg...fe.vetske..tyeAkkviiAtGefdkPnklnipG 145
                  +  +++ l+++Ve++   +++    + ++ +ke  ++++k++++AtG f+    + ++ 
   CTQ27993.1 622 KRGIDVLLDTSVEEILMRGDEvsgVRlINDEKEviEVQTKSIVVATGGFSANSAMVVKY 680
                  45677888888888877443311133155566667789***********9988887775 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.9   6.9e-06    0.0069      18      57 ..     482     520 ..     466     532 .. 0.89
   2 ?    2.2   0.1     0.089        89     106     136 ..     618     647 ..     607     691 .. 0.81
   3 ?   -0.3   0.2      0.51   5.1e+02     201     232 ..     870     901 ..     857     903 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.9e-06
                 EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT CS
        Thi4  18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGGa 57 
                  Dvv+vG+G +GL+aa     + +  v+i+e+  ++GG +
  CTQ27993.1 482 YDVVVVGSGGAGLAAAIQAHDE-GASVLIVEKMPTIGGNT 520
                 6*************99887777.**************976 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.089
                 HHHTSTTEEEEESEEEEEEEEETBTEEEEEE CS
        Thi4 106 kvlqlanvkllnavaveDlivregegvaGvv 136
                 + + + ++ +l  ++ve++++r  ++v+Gv 
  CTQ27993.1 618 RNITKRGIDVLLDTSVEEILMRG-DEVSGVR 647
                 4455589999************9.8899984 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.51
                 HHHHHHHECEEETTEEE-THHHHHHHT-EB-- CS
        Thi4 201 edaivkktrevvpnlyvaGmevaevdganRmG 232
                 + ++++ +++ + + y+aG  v  ++g+nR+G
  CTQ27993.1 870 DGEVLNVAQQPIRGAYAAGEVVGGIHGGNRIG 901
                 5578889999999*****************99 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2    0.0082       8.1       4      47 ..     484     523 ..     481     547 .. 0.85
   2 ?    7.7   0.0    0.0013       1.3     209     278 ..     613     675 ..     611     711 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0082
                 EEEE--SHHHHHHHHHHHHTT---GGGEEEE-SS---------- CS
        MCRA   4 aylvGsGiasLaaAvyLirdakvpgenihileelkvaggsldga 47 
                 + +vGsG a+LaaA+    +a+ +g  + i+e++++ gg + +a
  CTQ27993.1 484 VVVVGSGGAGLAAAI----QAHDEGASVLIVEKMPTIGGNTIKA 523
                 568***********8....899**************99987655 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0013
                 CHHHHHHHHHTT-EEE-SEEEEEEEEEEE.TTEEEEEEEEEEE.TTEEEEEE--TTEEEEEE---SSTT- CS
        MCRA 209 ilPlvkyLkeqgVdfqfntkVtdiefeeeeedkktvteielekeegeeetieleedDlvfvtnGsitess 278
                 i+ lv+ ++++g+d+ ++t+V++i ++ +      v++++l +  +e+e ie++++ +v++t G   +s+
  CTQ27993.1 613 ISGLVRNITKRGIDVLLDTSVEEILMRGD-----EVSGVRLIN--DEKEVIEVQTKSIVVATGGFSANSA 675
                 666888899******************44.....69*****97..45679***********999776665 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0014       1.4       2      29 ..     492     519 ..     492     550 .. 0.92
   2 ?    4.1   0.1     0.023        23     209     273 ..     613     683 ..     549     693 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0014
                    HHHHHHHHHHHTTEEEEEEESSSSSBTT CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGR 29 
                    aGLaaA q ++ G +V+++E  + +GG 
     CTQ27993.1 492 AGLAAAIQAHDEGASVLIVEKMPTIGGN 519
                    8**************************6 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.023
                    THHHHHHHHHTTTTEEEETSEEEEEEEE.ETTCEEEEETTSTEE....EESEEEE-S-HHHHH...SSEEESC CS
  Amino_oxidase 209 lsqlpealaeelrgldirlntrVkeikr.egdgvtvtledgevv....eaDaVvvTvplgvlk...ailfsPp 273
                    +s l++++++  rg d++l+t V ei   +++  +v+l + e+     + +++vv++    ++    ++++P 
     CTQ27993.1 613 ISGLVRNITK--RGIDVLLDTSVEEILMrGDEVSGVRLINDEKEvievQTKSIVVATGGFSANsamVVKYRPD 683
                    6778888888..****************645556677776666667999999777765444333555555555 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.6e-05     0.076     234     288 ..     283     336 ..     279     343 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.6e-05
                 HHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHH CS
      DHO_dh 234 irelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpkiakkik 288
                  +++++ +  ++p++gvGG+  + Da   +  G  l++v+ a   + p +a++i 
  CTQ27993.1 283 YCAMRSDTLAQVPVMGVGGVVNAADAEQGLDHGYDLIAVGRAC-IAYPDWASRIA 336
                 589999999******************************9988.56666777665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.4   0.00024      0.24       1      36 [.     483     516 ..     483     530 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00024
  Lycopene_cycl   1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    Dvvv+G+G Agl+ A +      g +v+++e  p +
     CTQ27993.1 483 DVVVVGSGGAGLAAAIQA--HDEGASVLIVEKMPTI 516
                    9************99999..999*******998876 PP

>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.3    0.0054       5.4      61      83 ..     444     466 ..     388     538 .. 0.88
   2 ?    0.2   0.0       1.1   1.1e+03      13      48 ..     734     768 ..     715     805 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0054
                   S-HHHHHHHHHHHHHHHHHHHHH CS
  Ribosomal_S9  61 GGlsgqaeAirlgiaraLvalek 83 
                   +G ++q+eA++ ++a+a+++ +k
    CTQ27993.1 444 SGATSQSEAVKKAVAKAMLKSSK 466
                   79****************98876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.1
                   EESSSEEEETTEECCHHSTTSCHHHHHCHHHHHTTT CS
  Ribosomal_S9  13 kegkgkilvngksleeYfkeeaarekvleplkltgl 48 
                   ++g g ilvn++  + +f+e   r kv +++ ++ +
    CTQ27993.1 734 IRGGGAILVNQQ-GNRFFNEMETRDKVSAAIIALPE 768
                   457789999976.56669999999999988776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (925 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.40
# Mc/sec: 6996.63
//
Query:       CTQ27994.1  [L=316]
Description: ApbE family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-75  254.3   0.0    1.6e-75  254.0   0.0    1.0  1  ApbE      ApbE family
  ------ inclusion threshold ------
      0.046   13.4   0.0      0.073   12.7   0.0    1.2  1  Gene66    Gene 66 (IR5) protein


Domain annotation for each model (and alignments):
>> ApbE  ApbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.0   0.0   1.8e-79   1.6e-75       1     258 []      14     285 ..      12     285 .. 0.91

  Alignments for each domain:
  == domain 1  score: 254.0 bits;  conditional E-value: 1.8e-79
                 TTEEEEEEEE.....HHHHHHHHHHHHHHHC-SS-TTSHHHHHHCT.S.S-EEE-HHHHHHHHHHHHHHHHTTTSS-TTTHHHHHHHCTTSGG.----H CS
        ApbE   1 mgttvsitlyg....leaaieaelerlekllsryrpdSelsrlNra.k.kevkvspelaellkaaleiseltdgafdptvgplvklwgfgeekarvpsa 93 
                 mg ++ ++l +    ++  +++ ++r+e+ll+ +r++S+++ +N+a + ++v+vs  +++l+++a+ +s   d af+ ++gplvklw++g++ ++vp+a
  CTQ27994.1  14 MGSPILLKLCShdeaMASRVFQLIKRYEDLLTVNRAESQVMDINHAaGrHPVTVSRPVFQLIQCAKAASMVRDSAFNLAIGPLVKLWRIGFHGHSVPDA 112
                 566666666523345557888***********************8876599**************************************999889**** PP

                 HHHHHHHTT.-GGGEEE........EESTT..-----TTTHHHHHHHHHHHHHHH.TT-EEEEEETTEEEEEC-ECT-EEEEEE-TT.S..SEEEEEEE CS
        ApbE  94 eeidaalalvgykkiel........lakkgpgmkLDlggiaKGyavdrvaellka.giksalvnlGGdiralGpdgkpwrvgiedPr.a..ellavlsl 180
                 ++i+a lal+  +++ l        l++  pgm+LDlg+iaKGy++drv+++l++ ++++al+nlGG++ +lG    +w +g+++P+ +  +l+++l++
  CTQ27994.1 113 ADIRARLALTRPQEVILdeatysvfLQQ--PGMELDLGAIAKGYIADRVRDYLRQqQVEKALINLGGNVHTLG----EWAIGLKKPFaDaqALIGSLTV 205
                 ***************999999**76665..55*****************************************....8*********7257999***** PP

                 SSSEEEEEETTSSEEE..TEEEES-B-TTTSSB---SECEEEEEE.SCHHHHHHHHHHHHHHHHHHHHHHCCGGGTCTEEE CS
        ApbE 181 sddavaTSGdyeryfe..gkryhHiidprtgyPaesglasvtVia.dsalADalaTalfvlgeekalellekkeegveall 258
                 ++++v+TSG+yeryfe  gkr hHi+dpr gyP +++l svtVi+ ds++ D+++T lf lg ek+ + l++ +++++a++
  CTQ27994.1 206 NGQSVVTSGTYERYFEqdGKRWHHILDPRSGYPLDNELDSVTVISaDSLDGDIWTTLLFGLGVEKGCAALRQ-RQDIDAIF 285
                 *99************778**************************6378***********************6.56799987 PP

>> Gene66  Gene 66 (IR5) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.2e-06     0.073      19      73 ..      47     101 ..      30     107 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.2e-06
      Gene66  19 dpaeeslyplltdsaehvvsLprSvrelarvvraasaeaaaalragapPpaeiWr 73 
                 + ae+++  +  +++ h v+++r v +l++  +aas++   a++   +P +++Wr
  CTQ27994.1  47 NRAESQVMDINHAAGRHPVTVSRPVFQLIQCAKAASMVRDSAFNLAIGPLVKLWR 101
                 568899999*********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2382.77
//
Query:       CTQ27995.1  [L=239]
Description: DNA-binding response regulator in two-component regulatory system with DcuS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-21   75.0   0.1    7.1e-21   74.5   0.1    1.3  1  Response_reg  Response regulator receiver domain
    0.00022   21.5   0.1    0.00053   20.3   0.1    1.7  1  CitT          Transcriptional regulator


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.1   7.9e-25   7.1e-21       1     111 [.       4     117 ..       4     118 .. 0.94

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 7.9e-25
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHH..HHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealell..keekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkaga 94 
                   vlivdDd +v+el r ++    g++  ++a++ ++a e++   ++++dl+llD+ m++ +Gl+ll +ire  + + vi++t++++ ++++ a+ +g+
    CTQ27995.1   4 VLIVDDDAMVAELNRLYVArVPGFRCSGSASTLSQAQEMIndPQQEIDLVLLDVYMQQDSGLDLLPTIRESGRAIDVIMITSAADAATVQTAMHYGV 100
                   8******************77***6666************777788*************************************************** PP

                   SEEEESSG-HHHHHHHH CS
  Response_reg  95 ddflsKpfdpeeLlkal 111
                   +d+l Kpf+  +  +al
    CTQ27995.1 101 VDYLIKPFQFPRFEEAL 117
                   *********99988776 PP

>> CitT  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   5.9e-08   0.00053       3      28 ..     135     160 ..     134     161 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 5.9e-08
        CitT   3 QrdVDrLFqraatgqpasgrLPKGID 28 
                 Q dVDrL++  a++++ +  LPKG  
  CTQ27995.1 135 QADVDRLLHGGAPEASDARKLPKGLT 160
                 99**********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1959.77
//
Query:       CTQ27996.1  [L=538]
Description: sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-23   82.4   0.8    3.9e-20   72.4   0.5    2.3  2  sCache_3_2   Single cache domain 3
    8.9e-17   61.6   0.0    2.9e-16   59.9   0.0    1.8  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    2.8e-09   36.5   0.3    6.3e-09   35.4   0.3    1.5  1  SPOB_a       Sensor_kinase_SpoOB-type, alpha-helical domain
    1.3e-07   31.6   0.0    1.9e-06   27.9   0.0    2.4  2  PAS          PAS fold
    2.7e-06   27.2   0.0    5.8e-06   26.1   0.0    1.5  1  HATPase_c_5  GHKL domain
    6.2e-06   26.6   0.0       0.16   12.4   0.0    2.8  3  sCache_3_3   Single cache domain 3
    8.7e-05   22.3   0.1      0.037   13.7   0.0    2.6  2  dCache_3     Double sensory domain of two-component sensor ki
    0.00028   20.8   0.0     0.0052   16.6   0.0    2.7  3  dCache_1     Cache domain
    0.00043   20.5   0.1      0.053   13.8   0.0    3.3  2  PAS_4        PAS fold
     0.0017   18.2   0.0     0.0029   17.4   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
     0.0077   16.2   0.0      0.019   15.0   0.0    1.6  1  PAS_8        PAS domain
  ------ inclusion threshold ------
       0.16   12.1   3.0       0.38   11.0   0.2    2.2  2  HemY_N       HemY protein N-terminus


Domain annotation for each model (and alignments):
>> sCache_3_2  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.5   2.6e-23   3.9e-20       7     137 ..      51     180 ..      45     182 .. 0.90
   2 !    7.9   0.0    0.0021       3.1      59     136 ..     240     327 ..     217     330 .. 0.81

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 2.6e-23
  sCache_3_2   7 aealeeralalatsvagsrivrvaltdrapesglqalvddvrritgvdyvvitDeegrvlahpdpaevgrklsgpataaalkagrayvgtvtgtlgpsl 105
                 +  l+e ala+a+++a+ ++v+++l+ + +++ +q+l++++ r  ++ y+++tD +g+++ hpd + +g+++  +++++   +g++ v +  g l p+l
  CTQ27996.1  51 RDGLKETALAVARTMADMPQVKRGLEAPPQQQIIQPLAQAITRRNDLLYAIVTDMQGIRYSHPDSSIIGKPF-IGHDIQPTLQGKENVAINHGVLAPAL 148
                 5668899********************9999*****************************************.555555555666666666699***** PP

  sCache_3_2 106 rvklPvfdadgrviGivsvGvkqdeisaelre 137
                 rv++Pvf ++++ iG+v vG++ ++++++++ 
  CTQ27996.1 149 RVFTPVFNERHQQIGVVVVGISLSKVDEQIAN 180
                 ****************************9986 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0021
  sCache_3_2  59 tDeeg..........rvlah.pdpaevgrklsgpataaalkagrayvgtvtgtlgpslrv.klPvfdadgrviGivsvGvkqdeisaelr 136
                  D++g          ++l++ pd++ v  +l   + +++l++g+ +++  +g  g  l +  +P+++ +g v+G++    +++e+s+ l+
  CTQ27996.1 240 VDAHGevnlinpaaeEILFSgPDKTLVHSPL-LDDLQTVLQSGEPMYDRELGCNGLLLIGnTVPIRS-QGAVVGAICTFRDKTEVSQLLQ 327
                 555555555555555899999****999999.889999**************99999887369****.9*****9977666666666665 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.6   6.8e+03      55      82 ..     145     175 ..     124     184 .. 0.61
   2 !   59.9   0.0     2e-19   2.9e-16       6     109 ..     430     530 ..     426     533 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.6
                 T...GTCS.TTCHHCSTCHTSTSSSHHHHHHH CS
   HATPase_c  55 k...klfe.kfsqddstkrggggtGlGlsivk 82 
                     ++f+  f + +++++g   +G++ls v+
  CTQ27996.1 145 ApalRVFTpVFNE-RHQQIGVVVVGISLSKVD 175
                 1566788855555.556666556666666555 PP

  == domain 2  score: 59.9 bits;  conditional E-value: 2e-19
                 HHHHHHHHHHHHHHH..HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCS.TTCHHCSTCHTSTSSSHHHHHHHH.HHHHTTTEEEEEEETTT CS
   HATPase_c   6 LrqiisnlvdNavkf..atkageieveikaseddlvisveDnGiGipkedlkklfe.kfsqddstkrggggtGlGlsivkk.lvelmgGeiwvesepgr 100
                 L  ++ nl++Na+++   + +gei + ++ ++++l+ +v+D+G+Gip+++++ +f   fs+      +g+ +G+Gl ++++ l e +gG++ vesepg 
  CTQ27996.1 430 LVTVLGNLIENALDAmsGQAEGEIGLLLHYQDGWLSGEVSDDGPGIPENNIDAIFNkGFST------KGENRGVGLFLANQqLRE-LGGTLAVESEPGV 521
                 7899***********5433788888888877799999******************999999......99************8888.9************ PP

                 EEEEEEEEE CS
   HATPase_c 101 Gttftftlp 109
                  t+f ++lp
  CTQ27996.1 522 FTQFFVHLP 530
                 ******998 PP

>> SPOB_a  Sensor_kinase_SpoOB-type, alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.3   4.2e-12   6.3e-09       9      50 ..     332     373 ..     325     379 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 4.2e-12
      SPOB_a   9 lkeliklLrsqRHDflNhLQvIsGylqLgkydkaeeyieevv 50 
                 +  ++++Lr   H+f+N+L+vI G+l ++ y k eey+ + +
  CTQ27996.1 332 MMSYVDALRTTSHEFMNKLHVILGLLNMKSYGKLEEYVLQTA 373
                 556899*******************************97765 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.3e-09   1.9e-06       2      51 ..     225     275 ..     224     281 .. 0.91
   2 ?    0.9   0.0      0.29   4.4e+02      92     112 ..     299     318 ..     294     319 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.3e-09
                 HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTH.HHCTTSBGGGGBS CS
         PAS   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsr.eevlgkslldlih 51 
                 +++a+l++l +++++vD+ g+++++N+aaee+l   + + +++++lld++ 
  CTQ27996.1 225 QRQAMLHALKEGVVAVDAHGEVNLINPAAEEILFSGPdKTLVHSPLLDDLQ 275
                 789****************************98777779999999999875 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.29
                 EEEEEEETTEEEEEEEEEEEE CS
         PAS  92 raspvrdaggeilgflgvlrd 112
                 +++p+r+ g    g+++++rd
  CTQ27996.1 299 NTVPIRSQGAV-VGAICTFRD 318
                 67899999765.5*******9 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.9e-09   5.8e-06       6      96 ..     430     524 ..     426     528 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 3.9e-09
  HATPase_c_5   6 lcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg....ekkkless..kskkeehGiGlksireivkkykgnlsieaedglFtl 96 
                  l+++lgnl++NA++a+s +   + +I l ++++++ l  +++    g    +++ ++++  ++k+e++G+Gl   ++ +++ +g+l++e e g+Ft+
   CTQ27996.1 430 LVTVLGNLIENALDAMSGQA--EGEIGLLLHYQDGWLSGEVSDDGPGipenNIDAIFNKgfSTKGENRGVGLFLANQQLRELGGTLAVESEPGVFTQ 524
                  899***************99..89*****************999655443355666644447899******************************97 PP

>> sCache_3_3  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.2   6.2e+03      84     101 ..     114     131 ..     106     137 .. 0.80
   2 !   11.3   0.0   0.00024      0.36      74     106 ..     148     180 ..     114     181 .. 0.88
   3 !   12.4   0.0   0.00011      0.16      53     105 ..     275     327 ..     264     329 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.2
  sCache_3_3  84 dgkviGmlfvGlpeeevq 101
                 d ++iG  f+G +++++ 
  CTQ27996.1 114 DSSIIGKPFIGHDIQPTL 131
                 557999999999998765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00024
  sCache_3_3  74 ltaYePlkdadgkviGmlfvGlpeeevqalike 106
                 l +++P+++++ + iG+++vG++ ++v+++i +
  CTQ27996.1 148 LRVFTPVFNERHQQIGVVVVGISLSKVDEQIAN 180
                 66899**********************999875 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00011
  sCache_3_3  53 eavlkkGet.ysgraeilgkkyltaYePlkdadgkviGmlfvGlpeeevqalik 105
                 ++vl++Ge+ y  +   +g   ++  +P++  +g+v+G++++ ++++ev +l++
  CTQ27996.1 275 QTVLQSGEPmYDRELGCNGLLLIGNTVPIRS-QGAVVGAICTFRDKTEVSQLLQ 327
                 79*******9999999***************.*****************99987 PP

>> dCache_3  Double sensory domain of two-component sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.5e-05     0.037      97     151 ..     127     179 ..     125     195 .. 0.86
   2 !    5.9   0.0    0.0058       8.7      82     136 ..     260     313 ..     217     336 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.5e-05
    dCache_3  97 irsvlqgeealagievgdagctfrvvaPvlaegeqvvGavvfgvsLnndllrelk 151
                 i+ +lqg+e++a      a  ++rv  Pv++e  q++G+vv+g sL+  + ++++
  CTQ27996.1 127 IQPTLQGKENVAINHGVLA-PALRVFTPVFNERHQQIGVVVVGISLS-KVDEQIA 179
                 7889999999988888888.99************************9.6766665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0058
    dCache_3  82 epskfgdslslfrllirsvlqgeealagievgdagctfrv.vaPvlaegeqvvGav 136
                  p+k  + ++l+++  ++vlq++e+++  e+g  g+ +++  +P+++ g  vvGa+
  CTQ27996.1 260 GPDKTLVHSPLLDD-LQTVLQSGEPMYDRELGCNGLLLIGnTVPIRSQGA-VVGAI 313
                 44444456788889.***************9999965555389***7775.***98 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.5e-06    0.0052      27     169 ..      56     180 ..      45     183 .. 0.68
   2 ?    0.5   0.0      0.28   4.2e+02     108     170 ..     272     329 ..     210     332 .. 0.61
   3 ?   -3.2   0.0       3.8   5.6e+03       9      34 ..     425     450 ..     424     451 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.5e-06
    dCache_1  27 dslenlaetlasnpslqdlleepnraneasreslqallksilksn....pdisgvylvdadGqviassdpssppnlegtddpadrdwykealaggg.gk 120
                 +++ + a+t+a +p+++++le+p++  +++++ l+++++  ++       d +g+ + ++d  +i         +      p     ++ +l+g++   
  CTQ27996.1  56 ETALAVARTMADMPQVKRGLEAPPQ--QQIIQPLAQAITRRNDLLyaivTDMQGIRYSHPDSSIIG--------K------PFIGHDIQPTLQGKEnVA 138
                 568899****************996..554444444444432222222244466666666666664........2......222333788899885333 PP

    dCache_1 121 pvisdpyvdqtggk..pvitiavpiyddsgkfiGvlaadldldnlqdllsn 169
                 +         + g+  p + + +p++++  + iGv+++ ++l+ +++ + n
  CTQ27996.1 139 I---------NHGVlaPALRVFTPVFNERHQQIGVVVVGISLSKVDEQIAN 180
                 3.........346566***********88999*************998776 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.28
    dCache_1 108 dwykealaggggkpvisdpy.vdqt...ggkpvitiavpiyddsgkfiGvlaadldldnlqdllsni 170
                 d ++++l++g  +p     y +  +    g + i  +vpi++ +g ++G+++   d +++++ll+++
  CTQ27996.1 272 DDLQTVLQSG--EP----MYdR--ElgcNGLLLIGNTVPIRS-QGAVVGAICTFRDKTEVSQLLQRL 329
                 3377888888..77....5533..244445688888999997.799999999999999999998876 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.8
    dCache_1   9 eqllglaeqlanniedvldslenlae 34 
                 +q++ l++ l+n ie+ ld +  +ae
  CTQ27996.1 425 KQVTVLVTVLGNLIENALDAMSGQAE 450
                 68889999999999999999998886 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.1   3.1e+03      82     104 ..     148     170 ..     131     174 .. 0.81
   2 !   13.8   0.0   3.5e-05     0.053       1     108 [.     230     322 ..     230     324 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.1
       PAS_4  82 elrllPlrdesGevigvlvisrD 104
                 +  ++P+++e+ + igv+v+++ 
  CTQ27996.1 148 LRVFTPVFNERHQQIGVVVVGIS 170
                 56679****99999***999865 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.5e-05
       PAS_4   1 ldslpdalavldpdgrvlyaNaaaae.lfgappeellGktlaellpeedaarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGevigv 98 
                 l++l ++++++d++g v  +N+aa+e lf  p+++l+ ++l +            +l+ vl+++ep ++ e l +   +  +  + +P+r ++G v+g+
  CTQ27996.1 230 LHALKEGVVAVDAHGEVNLINPAAEEiLFSGPDKTLVHSPLLD------------DLQTVLQSGEPMYDRE-LGC--NGLLLIGNTVPIR-SQGAVVGA 312
                 5788999*******************99999999988888886............7888888888888888.333..4556666778887.58888888 PP

       PAS_4  99 lvisrDiTer 108
                 ++++rD Te 
  CTQ27996.1 313 ICTFRDKTEV 322
                 8888888886 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     2e-06    0.0029       5      74 ..     432     496 ..     427     516 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2e-06
  HATPase_c_3   5 kAlaelvdNsldAdaen....vkievnknrgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkG 74 
                  ++l  l++N+ldA + +    + + ++ ++g   +  + DdG G++e++++  ++ + s+k ++        +G
   CTQ27996.1 432 TVLGNLIENALDAMSGQaegeIGLLLHYQDG-WLSGEVSDDGPGIPENNIDAIFNKGFSTKGEN--------RG 496
                  67889********999988889999999874.8999*******************999998843........34 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.3e-05     0.019       4      56 ..     227     278 ..     224     289 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
       PAS_8   4 ralfesspdgiavvd.lgdrivdvNqaalell..Gysadlkgellgqllpvlrpll 56 
                 +a+++++ +g++ vd  g+ +  +N+aa+e+l  G +  +k+ +  +ll++l+  l
  CTQ27996.1 227 QAMLHALKEGVVAVDaHGE-VNLINPAAEEILfsG-P--DKTLVHSPLLDDLQTVL 278
                 789************7777.************555.3..45544457777766555 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.3      0.33   4.9e+02      16      44 ..      19      47 ..      11      68 .. 0.61
   2 ?   11.0   0.2   0.00026      0.38       9      71 ..     180     241 ..     177     257 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.33
      HemY_N 16 lvvavlllvllfvllylllrllrlllrlp 44
                l +av l+++ ++ ++lll    + ++++
  CTQ27996.1 19 LSTAVSLMIGSVIGAVLLLVYALWYMQIS 47
                44455555555555555554444444444 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00026
      HemY_N   9 gyrietslvvavlllvllfvllylllrllrlllrl.parvrrwrrrrrerkarealseGliala 71 
                 + r ++ l+ ++ +lv+++ ++ l+  l r ll+l p+ ++  ++  +++++ +al+eG++a+ 
  CTQ27996.1 180 NSRWDVLLTILFSALVCALGTWSLVRGLKRVLLGLePHEISTQFQ--QRQAMLHALKEGVVAVD 241
                 566777778888888888888888888888888889999998765..6689**********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      687  (0.0383178); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 3994.14
//
Query:       CTQ27997.1  [L=118]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0052   15.5   1.0     0.0052   15.5   1.0    1.2  1  CBP_GIL   Cellulose biosynthesis GIL


Domain annotation for each model (and alignments):
>> CBP_GIL  Cellulose biosynthesis GIL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.0   2.9e-07    0.0052     166     208 ..      14      58 ..       6     100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.9e-07
     CBP_GIL 166 rvlaGlAsLrsq..qdellydvafWrnekgvladqalsLrfdegr 208
                 r+++ lA+ r+q  + e+++++a+W++++gv+ +++++L+ ++++
  CTQ27997.1  14 RHVERLAQHREQdnEAEAEWEIARWQHRSGVVIQRRYELEIAQQD 58 
                 7788889888883345689********************998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 902.71
//
Query:       CTQ27998.1  [L=306]
Description: N-acetylmuramic acid 6-phosphate etherase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-07   30.4   0.1    7.3e-07   29.3   0.1    1.6  1  SIS_2     SIS domain
    1.6e-06   28.0   0.2    2.1e-05   24.4   0.0    2.2  2  SIS       SIS domain


Domain annotation for each model (and alignments):
>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   8.2e-11   7.3e-07      19     137 ..      48     164 ..      33     165 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 8.2e-11
                 HHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST..THHHHHTT-TTHHHHHHHHTT--TT-EEEEE-SS--SH CS
       SIS_2  19 eaiekaaeliadslenggkvlvfGsGhSaalaeelaaragglaeferialpalalhtdaeatkssalerdegyakqilrlvrlkpgDvLlviSnsGnna 117
                   i++++++ ++++++gg++++ G+G S   a+e++ ++    + ++++   +a  + a +++++ +++   ++   l++ +++++D+Ll +  sG+ +
  CTQ27998.1  48 PDIARLIDIATATISRGGRLVIIGAGASGRTAIEAVSDYSPE-GKHALV-GLIAGGQTAAMAERETAANNYDLGAFELQSLDFSNRDMLLALTVSGKTP 144
                 6799**********************************9632.222222.2233333333566777778888888889999****************** PP

                 HHHHHHHHHHHHT-EEEEEE CS
       SIS_2 118 vvveaaeaakergmkviAlt 137
                  v  a+++a ++g+++ ++t
  CTQ27998.1 145 WVWGAMRHAWSLGAPIAVIT 164
                 ****************9998 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2     0.028   2.5e+02       5      22 ..      64      81 ..      60     112 .. 0.84
   2 !   24.4   0.0   2.3e-09   2.1e-05      52     122 ..     129     201 ..     109     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.028
                SSEEEEEESHHHHHHHHH CS
         SIS  5 akriyvlGaGtsyaiake 22
                  r++++GaG+s+ +a e
  CTQ27998.1 64 GGRLVIIGAGASGRTAIE 81
                5699********988865 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 2.3e-09
                 STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEEEECHC..SSSHCHHHHHHH CS
         SIS  52 deddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlalyinaepet..lvastksltaql 122
                 +++d +++++ sg t+ +  a ++a + ga+i +IT +++s +a+ ad++++ +++pe+  ++a  k+ +aq 
  CTQ27998.1 129 SNRDMLLALTVSGKTPWVWGAMRHAWSLGAPIAVITQQPTSEAAQLADIIIAPQTGPEAvaGLANPKAQLAQR 201
                 5678899************9***************************************66666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2353.37
//
Query:       CTQ27999.1  [L=551]
Description: malate dehydrogenase, FAD/NAD(P)-binding domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.3e-229  760.5   0.2   7.3e-229  760.3   0.2    1.0  1  Mqo            Malate:quinone oxidoreductase (Mqo)
    1.7e-08   34.4   0.0    2.8e-08   33.7   0.0    1.3  1  DAO            FAD dependent oxidoreductase
     0.0017   17.6   0.0       0.01   15.0   0.0    2.0  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
     0.0087   15.3   0.0      0.015   14.6   0.0    1.4  1  FAD_binding_3  FAD binding domain
  ------ inclusion threshold ------
      0.036   13.3   0.0       0.41    9.8   0.0    2.1  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  760.3   0.2    2e-232  7.3e-229       2     489 .]      31     517 ..      30     517 .. 1.00

  Alignments for each domain:
  == domain 1  score: 760.3 bits;  conditional E-value: 2e-232
         Mqo   2 kvdvvliGaGimsatlgvllkelepelsievlerldkvaeessnawnnaGtGHsalcElnYtpekedgsidiskAvkineqfevsrqfwaylvekgllk 100
                 k+d +liG+Gimsa+lg++l+ l+p+++++++e+ld va essn wnnaGtGHsa++ElnYtpe++dgsid+skA++ineqf +srqfw+ +v++g+l+
  CTQ27999.1  31 KTDFLLIGGGIMSASLGTWLQALQPDWDLTMVEKLDGVALESSNGWNNAGTGHSANMELNYTPERADGSIDVSKALDINEQFMISRQFWSAQVKRGILH 129
                 79************************************************************************************************* PP

         Mqo 101 dpkefinkvpHlsfvageenveflkkRyealkksplfegmeysedkeelkewlPlvmegRdakekvaatrieeGtdvnfgaltrqllkalekkkgvelk 199
                 dp++fin++pH+sfv+g +nv++l+kRy+al++++lf+gm++s+d++++k+w+PlvmegRd+++kvaat++  Gtdvn+g++trql+ +l+k+++++l+
  CTQ27999.1 130 DPHSFINSTPHMSFVWG-DNVDYLQKRYNALQQTTLFQGMKFSTDHAQIKQWAPLVMEGRDPQQKVAATWTPVGTDVNYGEITRQLIGSLKKNNHFTLQ 227
                 ****************9.68******************************************************************************* PP

         Mqo 200 lkhevkdlkreedgkWkvkvkdlktgekkkvkakfvfiGaGGgalklLqksgipeakgyggfPvsGqflvcknpevveqheakvYgkaavgaPPmsvpH 298
                 +++ev+d+kr++d++W+v++k++++ge+++++ak+vfiGaGGgalklLqk+gipea++y+gfPv+G+fl+++np+v++qh  kvYg+a+vgaPPmsvpH
  CTQ27999.1 228 TSSEVTDFKRNADNSWHVTIKNVQSGEAQTIDAKYVFIGAGGGALKLLQKTGIPEADNYAGFPVGGSFLMTENPAVTAQHLEKVYGQASVGAPPMSVPH 326
                 *************************************************************************************************** PP

         Mqo 299 lDtRvidgkksllfGPfagfstkflkegslldllksvklsnllpllavglknldLvkYlieqvlkskedrlealreflpeakkedWelvvaGqRvqvik 397
                 lD+R++dgk+++lfGPfa+fstkflk+gs++dll++ +++n+lp+ +vgl+n+dLvkYl++qv+ s++dr++al+e++p+a+kedW+l++aGqRvq+ik
  CTQ27999.1 327 LDARYLDGKRVVLFGPFATFSTKFLKNGSFFDLLSTTTTNNVLPMTHVGLDNFDLVKYLVSQVMLSDDDRFAALKEYYPDARKEDWKLIQAGQRVQIIK 425
                 *************************************************************************************************** PP

         Mqo 398 kdeekggvlefGtevvasadgslaalLGasPGAstavsimlevlekcfkeklkseewkeklkelipsygkkleedaelleevrketakvLkl 489
                 kd+ekggvl++Gtevv +++++++alLGasPGAsta++i l+vl+++f+++++s+ew++++++++psyg+kl+ + +l+++v++ ta++L+l
  CTQ27999.1 426 KDAEKGGVLKLGTEVVVDQQKTISALLGASPGASTAAPITLNVLKQMFPQQFNSPEWQSRIHAIVPSYGQKLNGNVALTQQVWDDTAATLQL 517
                 ******************************************************************************************97 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   7.9e-12   2.8e-08       1     231 [.      33     302 ..      33     368 .. 0.70

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 7.9e-12
                 EEEEECTSHHHHHHHHHHHHT.T...EEEEESSSSTT..SSGGGSSEEEEESSS...STHHSTH..........HHHHHHHHHHHHHHHHHHH...HSS CS
         DAO   1 dvviiGGGiiGlstAyeLarr.g...Vtllekgdiag..sgaSgrnsgllhsgl...rylpeas..........elarlslealeelreleee...lgi 77 
                 d + iGGGi+ +s   +L++  +    t +ek d ++  s   ++n+g  hs+     y+pe            ++ +    +++++ +  ++   +++
  CTQ27999.1  33 DFLLIGGGIMSASLGTWLQALqPdwdLTMVEKLDGVAleSSNGWNNAGTGHSANmelNYTPERAdgsidvskalDINEQFMISRQFWSAQVKRgilHDP 131
                 5677**************6443689**********9954566688899999977777334433369999999997777778889999666666233333 PP

                 TTSEEEEEEEEEESSHHHHHHHHHHHHHHHHTTT.TE.EE.EEHHHHHHHSTT.ST.....TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT.-EEEES CS
         DAO  78 didyrrtGllslaadeeelealdkllallleagl.da.el.ldaeevrelepa.lp.....gllgalfypdtgqvdpakltaalaraaealG.veileg 166
                 +     t ++s  ++++  ++l+k++ +l++  l +  ++  d +++++++p   +     + ++a ++p +  v++ + t+ l   ++++   ++ + 
  CTQ27999.1 132 HSFINSTPHMSFVWGDN-VDYLQKRYNALQQTTLfQGmKFsTDHAQIKQWAPLvMEgrdpqQKVAATWTPVGTDVNYGEITRQLIGSLKKNNhFTLQTS 229
                 44444455555555665.*********9965666544365355599******98334567644599*********************9777648***** PP

                 ECEEEEEEEETCEEEEE..EECTEEEEEEEE..EEE--GGGHH.HHHTT..CTTTSEE.EEEEEEEEEEEECC CS
         DAO 167 tevtgleeedgkvwgve..rttpgendaada..vVnaaGawsd.llgll..keldlpi.spvrgqvlvlkpls 231
                 +evt+++++ +  w+v   ++ +ge +++da  v + aG ++  ll+++  +e d     pv g+ l+++++ 
  CTQ27999.1 230 SEVTDFKRNADNSWHVTikNVQSGEAQTIDAkyVFIGAGGGALkLLQKTgiPEADNYAgFPVGGSFLMTENPA 302
                 ******8877788***996544465555566779999999987555444355556444488999999994432 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.14   5.1e+02     180     224 ..      20      64 ..       2      81 .. 0.76
   2 !   15.0   0.0   2.8e-06      0.01     288     339 ..     217     268 ..     176     269 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.14
  K_oxygenase 180 eylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtr 224
                   +++ ++++ +k +++ +G+G   a +   l + q++ +l++v +
   CTQ27999.1  20 AATHAEADTSKKTDFLLIGGGIMSASLGTWLQALQPDWDLTMVEK 64 
                  444555568889999999999999888888888888888887755 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.8e-06
  K_oxygenase 288 kvkgeerlrllpnrevesaeaegkgeveltlrneesgeeetlevdavvlATG 339
                  ++k++++++l++++ev++ ++++++++++t++n +sge++t+++ +v++  G
   CTQ27999.1 217 SLKKNNHFTLQTSSEVTDFKRNADNSWHVTIKNVQSGEAQTIDAKYVFIGAG 268
                  5667889****************************************98876 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.2e-06     0.015     100     173 ..     203     279 ..     152     319 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.2e-06
                    EE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCC.CCCEEEECCTTEEEEEEEEEE.EE--GTT-HHHHHHT CS
  FAD_binding_3 100 tvypqteleriLvehaeerg.lqvrfktevesleqdeeg.vtaevrdketgeeetvrakYl.vGaDGgrStvrktlg 173
                    t+++  e++r L+ ++++   ++++ + ev+ ++++ ++  + ++++ ++ge +t++akY+ +Ga Gg  +  ++ g
     CTQ27999.1 203 TDVNYGEITRQLIGSLKKNNhFTLQTSSEVTDFKRNADNsWHVTIKNVQSGEAQTIDAKYVfIGAGGGALKLLQKTG 279
                    667777999999999999999************9987762689999**************989**999766666655 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.061   2.2e+02     128     177 ..      19      68 ..       6      99 .. 0.80
   2 ?    9.8   0.0   0.00011      0.41     191     251 ..     216     281 ..     166     303 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.061
                  SECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-..EEEEEESSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
  Pyr_redox_2 128 rtldsaealklkllpkrivvvGgGyiGvElAaalaklgk..evtlveardrl 177
                  ++ ++aea  +k+++  ++ +GgG  +  l   l  l+   + t+ve +d +
   CTQ27999.1  19 SAATHAEADTSKKTD--FLLIGGGIMSASLGTWLQALQPdwDLTMVEKLDGV 68 
                  566677777777776..999******99999999988763458888888766 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00011
                  HHHHHT.TEEEEESCEEEEEEETTE.....EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-E CS
                  xxxxxx.xxxxxxxxxxxxxxxxxx.....xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 191 ealeke.Gvevklgtsvkeidgnge.....kle.vvledgeeidadlvvvavGvrpstelleeklgle 251
                    l+k+   ++++ ++v+++++n +      ++ v+ ++ ++ida++v++++G  + + l  +k g++
   CTQ27999.1 216 GSLKKNnHFTLQTSSEVTDFKRNADnswhvTIKnVQSGEAQTIDAKYVFIGAGGGALKLL--QKTGIP 281
                  444444467778888888888888887754444777777777888888888887776544..455554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 4406.74
//
Query:       CTQ28000.1  [L=308]
Description: Malonate utilization transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-34  119.3   0.2    1.9e-34  118.9   0.2    1.1  1  LysR_substrate  LysR substrate binding domain
    9.2e-09   35.1   0.0    1.9e-08   34.1   0.0    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   0.2   2.1e-38   1.9e-34       4     201 ..      97     296 ..      94     300 .. 0.96

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 2.1e-38
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS...CCTTEEEEEEEEEEEEEEEETTSGGGGSSS CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp...edsglearpLaeeplvlvaspdhpLargep 95 
                      +grLrig+  +l+   +p+++   + r Pe+el+l++g+++ lld+l++  lD+ ++a ++   + + ++++pL+e+ ++l+a++  +L + + 
      CTQ28000.1  97 GQGRLRIGTLYSLTLETVPRIIMGMKLRRPELELDLTMGSNQMLLDMLEDDALDAILIATNEgefNNTAFDVVPLFEDDIFLAAPATERLDASRL 191
                     68****************************************************************************************99999 PP

                     ECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESST.TCEEEEEEEEET CS
  LysR_substrate  96 vsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpep.plprelylvyrk 189
                      +l+d ad +++ l eg+++   +++a++ ag++p+++ +vn++ ++++lv+aG+G+allp  +  + + + +++ l l+ep ++++ +++vy +
      CTQ28000.1 192 ADLRDYADRKFVSLAEGFATYAGFREAFHIAGFEPEIVTRVNDIFSMISLVQAGVGFALLPGRM--KKVYEKDVQLLKLAEPyQMRQLISIVYSH 284
                     9***************************************************************..8999999********87777999****** PP

                     TCCCHHHHHHHH CS
  LysR_substrate 190 grelspavrafi 201
                     +re+++ + a++
      CTQ28000.1 285 HRERDADLLALA 296
                     ****99888876 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   2.1e-12   1.9e-08       1      54 [.      11      64 ..      11      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 2.1e-12
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEE CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglr 54
                +r+l +f   +  g+++r Ae++ ls  +v r++ +LEe +g+pLf+ +gr+l 
  CTQ28000.1 11 FRKLSVFMMFMAKGNIARTAEAMKLSSVSVHRALHTLEEGVGCPLFVHKGRNLL 64
                6899********************************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2724.13
//
Query:       CTQ28001.1  [L=306]
Description: Malonyl CoA-acyl carrier protein transacylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-23   81.3   1.5    1.3e-22   80.7   1.5    1.3  1  Acyl_transf_1  Acyl transferase domain
  ------ inclusion threshold ------
      0.098   12.4   0.4       0.41   10.3   0.3    2.0  2  SAT            Starter unit:ACP transacylase in aflatoxin bio


Domain annotation for each model (and alignments):
>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   1.5   1.5e-26   1.3e-22       2     278 ..      11     280 ..      10     292 .. 0.90

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 1.5e-26
                    EEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHHHHH CS
  Acyl_transf_1   2 fvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGElAa 97 
                    f f+GqG Q  GM ++L + +++  ++ a + + ++          l++++   l+ +  vq+ L +  +a a  l+ +Gv p +v G S+G   a
     CTQ28001.1  11 FTFPGQGGQRPGMLAALPDREAILTQARAVLGNEVAT---------LDSAD--ALQHTRAVQLCLLIAGVAWARELQRQGVDPQMVSGLSIGAFPA 95 
                    89******************88888887777777777.........99999..9****************************************** PP

                    HHHCCSSSHHHHHHHHHHHHHHHHHHTS-E..ECCEECS..HHHHHHH..TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC..CCEEECCCEE CS
  Acyl_transf_1  98 avvagalsseeallavvlrsrlmmqlagpg..dmaavel.aeeeeklrcqddvvgavansprrvvisgsqealrelvervskeg.vgalvenvnva 189
                    av agal  + al+ v+lr+ lm q+ ++g    a ++l  +  e+l +  +v++a  n + + vi+g  ea++e+ +   ++g   a++ +v+v 
     CTQ28001.1  96 AVIAGALDFASALRLVALRGDLMEQAYPEGygLTAIMGLtRPRVEALMQGHEVYLANLNAETQFVIAGRDEAMAEVAQLALRAGaSKAQRLAVSVP 191
                    **************************9776214566677445555666999***************************99888878999******* PP

                    CTTCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCHHHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCC CS
  Acyl_transf_1 190 vhspqvdaiadalasaladiaprkpkvakisstsldesserelsaeywvanlrspvrfaeavlsaaetiplvfveispHslllaalekt 278
                    +h + +d+ a +la+a a   +r p+ a+ s  +++    ++  a+  + n+  pv  +ea+ +a e   +  +e++p  +l+   +++
     CTQ28001.1 192 SHCALLDKPAAELAKAFAGASLRRPRCAYLSGSTARVLWDPQRIADDLAMNMARPVHWQEAMVAADERDARLAIEMPPGGVLTCLTRQA 280
                    **************************9998888888887777778888899**************999**********99998776665 PP

>> SAT  Starter unit:ACP transacylase in aflatoxin biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   4.6e-05      0.41      82     128 ..      59     106 ..      34     113 .. 0.80
   2 ?   -1.0   0.0      0.13   1.2e+03     194     240 .]     146     193 ..     139     194 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.6e-05
         SAT  82 iaqlaqfivyleenpeeyps.pestylvGlCtGllaAaavacskslse 128
                  +ql+ +i+ +   +e   +  ++  + Gl++G+++Aa++a + ++++
  CTQ28001.1  59 AVQLCLLIAGVAWARELQRQgVDPQMVSGLSIGAFPAAVIAGALDFAS 106
                 57888888886555554444445789**************99877665 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.13
         SAT 194 srvyisavssss.vtisGpPstleallksskakkkkkksklpiyapyH 240
                 + vy +  ++++ ++i+G  ++++++ +    +  +k ++l ++ p H
  CTQ28001.1 146 HEVYLANLNAETqFVIAGRDEAMAEVAQLALRAGASKAQRLAVSVPSH 193
                 566777777766677777777776666655555555555666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2640.97
//
Query:       CTQ28002.1  [L=205]
Description: Phosphoribosyl-dephospho-CoA transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-53  179.4   9.7    7.6e-53  179.3   9.7    1.0  1  MdcG      Phosphoribosyl-dephospho-CoA transferase MdcG


Domain annotation for each model (and alignments):
>> MdcG  Phosphoribosyl-dephospho-CoA transferase MdcG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.3   9.7   4.2e-57   7.6e-53       1     198 [.       6     199 ..       6     200 .. 0.90

  Alignments for each domain:
  == domain 1  score: 179.3 bits;  conditional E-value: 4.2e-57
        MdcG   1 rrHdlvwlspaaaaaaleakaalpawaa....aglpvvvrRakaedagaevplGlrlppaarkqRlalavapsaiarvveplaLa..aalaaaplaara 93 
                 r+Hdlvwl++a+   ale+ a  + w+a    a+lpvvvrR+ + d+++ vp+G+r+   +r+qR+a +v++++i+r+v+p+ L   ++l + p   ++
  CTQ28002.1   6 RPHDLVWLNHAS---ALEDIA--EPWVAqqwrAALPVVVRRDVD-DQAR-VPVGVRG--MKREQRAAGWVQARNIVRSVTPEMLVdrEVLLHSPFVSQP 95 
                 79**********...777765..9999999999**********8.7777.*******..**************************55333355555555 PP

        MdcG  94 ala.alaallaalglawgvyGSlgwqlatglpylhesSDLDLlirvasalqlarlldllaaleaaavrlDgeielpsggavalrElaaaaaqvlvKtad 191
                  ++ a+a  l+++++ wgv+GS+g++lat++p+lh++SDLDLlir++++l++++ll++  +++++++r+D+++e+p  ga+al+E++++  + l+Kt++
  CTQ28002.1  96 PVQgAIALTLHRWPWGWGVTGSTGYALATEIPVLHAASDLDLLIRAPQPLDREALLEWQTRVAQLPCRADTQVETPY-GAFALNEWLRDG-RALLKTSR 192
                 4441566677899****************************************************************.**********99.******** PP

        MdcG 192 gvrLver 198
                 g+rL++ 
  CTQ28002.1 193 GARLTAT 199
                 ****976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1887.19
//
Query:       CTQ28003.1  [L=319]
Description: Auxin efflux carrier [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-62  209.9  30.8    7.9e-36  123.3   5.7    2.0  2  Mem_trans  Membrane transport protein
  ------ inclusion threshold ------
        8.5    6.0   8.3       0.58    9.7   1.6    2.3  3  PIRT       Phosphoinositide-interacting protein family


Domain annotation for each model (and alignments):
>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   5.7   8.8e-40   7.9e-36       2     161 ..       5     164 ..       4     167 .. 0.97
   2 !   93.5  17.4   9.8e-31   8.8e-27     232     387 .]     165     313 ..     163     313 .. 0.96

  Alignments for each domain:
  == domain 1  score: 123.3 bits;  conditional E-value: 8.8e-40
   Mem_trans   2 vleavvplyvimllgYgsvkwvkiftpdqcsginrfVvlfavPllifhfisqnnpyemllrfiladvlvklivlillllgallskifkgslewtitlfs 100
                 +++a++p++vimllg++++k  +++++++ s++n fV++fa+P+++f+  +q+ +  ++++ +l++vl++++++++ ++++l +++fk++++  ++l++
  CTQ28003.1   5 IIHALAPIFVIMLLGFWAGKA-GMVDNKNVSLLNIFVMDFALPATLFSATVQTPWAGIVAQSPLVLVLTGAMWITYAAIYFLATSVFKRTPQDAAVLTL 102
                 799******************.***************************************************************************** PP

   Mem_trans 101 lstlpNtlvlgipllkalyge.ygvslmvqvvvlqciiiytlllflfeyrgaklliseefpd 161
                 +++lpN++ lg+p+l ++ ge  ++sl v+v++ +  +++t+++ l+ +r++   + e++++
  CTQ28003.1 103 TVALPNYAALGLPILGSVLGEgASTSLSVAVSIACGSVLMTPFCLLILEREKARAAGENSGS 164
                 *********************9******************************9999998875 PP

  == domain 2  score: 93.5 bits;  conditional E-value: 9.8e-31
   Mem_trans 232 trlilimvlrklirnPntyssllglilslvsfkwnvimpkiiqksisilgdaglpmalfslGlfLalqpkkiacgnsvatfalavRlilgPlvmlvavl 330
                 t+++l +++++++++P ++++llg++ls++++k++    +++  si+ lg a++++alf  G++L++++ ++++ ++++   ++v+l+++P++ +++v+
  CTQ28003.1 165 TLAMLPVLMWRSVKKPIVWGPLLGVVLSAIGIKMP----DLLLASIKPLGLAATAAALFLTGVILSARKLQLNALIATS---TIVKLLVQPFIAWGLVM 256
                 7899*****************************77....***************************9998888888887...8**************** PP

   Mem_trans 331 avgLrgslllvaivqaAlPqgivlfviAkeynvherelstllifgmlialpitlvyy 387
                 ++gL+gs    ai+ +Al  g++ +v+ ++++v++  + ++l+++ +++++++++++
  CTQ28003.1 257 LLGLHGSIAITAILMIALAAGFFGVVFGNRFGVQSPDAEAVLLLSSVLCILSLPLFI 313
                 *******99999999***************************************986 PP

>> PIRT  Phosphoinositide-interacting protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.13   1.1e+03      45      95 ..      62     114 ..      47     121 .. 0.46
   2 ?   -3.2   0.0      0.64   5.7e+03      40      51 ..     171     182 ..     158     196 .. 0.61
   3 ?    9.7   1.6   6.5e-05      0.58      48      99 ..     207     258 ..     204     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.13
        PIRT  45 vykkpiivlsvGgavfllGvvittlsrn..stlknkdkevf.klsGpaflslGl 95 
                 v + p++++ +G+  ++   +i  l+ +  + ++++ + +   ++ p + +lGl
  CTQ28003.1  62 VAQSPLVLVLTGAM-WITYAAIYFLATSvfKRTPQDAAVLTlTVALPNYAALGL 114
                 55666666655554.443334444422200222222222222455566666666 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.64
        PIRT  40 rskwdvykkpii 51 
                    w   kkpi+
  CTQ28003.1 171 VLMWRSVKKPIV 182
                 555666667765 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 6.5e-05
        PIRT  48 kpiivlsvGgavfllGvvittlsrnstlknkdkevfklsGpaflslGlmllv 99 
                 kp+ + ++ +a+fl Gv++++   + +    ++++ kl    f++ Gl++l+
  CTQ28003.1 207 KPLGLAATAAALFLTGVILSARKLQLNALIATSTIVKLLVQPFIAWGLVMLL 258
                 788889999*************99999********************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2507.57
//
Query:       CTQ28004.1  [L=266]
Description: Malonate decarboxylase gamma subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-102  342.5   1.8   1.2e-102  342.3   1.8    1.0  1  MdcE            Malonate decarboxylase gamma subunit (MdcE)
     0.0072   15.0   2.1      0.009   14.7   2.1    1.1  1  Carboxyl_trans  Carboxyl transferase domain


Domain annotation for each model (and alignments):
>> MdcE  Malonate decarboxylase gamma subunit (MdcE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.3   1.8  1.4e-106  1.2e-102       2     232 .]      11     266 .]      10     266 .] 0.99

  Alignments for each domain:
  == domain 1  score: 342.3 bits;  conditional E-value: 1.4e-106
                 HHHHHHS-...-TTS-TTEEEEEEEETTEEEEEEEE---TT.......SS-B-HHHHHHHHHHHHHHH....TSSS--EEEEEEEE--B--SHHHHHHT CS
        MdcE   2 llaaLfpd...gsgiaaslkvldgsltlesvrfvaVigdan.......kgevGvdealaLaaaVleai....eraekrpilvlvDvasQrlgrrdEllG 86 
                 +l++L+pd   +sg+++s++v+dg++++e+vrf+aV++dan       +gevG++e+++La++V+e+i    +++ krpi++++Dv+sQ++grr+E++G
  CTQ28004.1  11 WLNKLAPDaplMSGLCPSVQVADGQINGENVRFIAVVPDANnhypraaGGEVGLLEGWTLAKVVNETIaadaDQPVKRPIVAVIDVPSQAYGRREEAFG 109
                 9*******9*9***********************************************************9999************************* PP

                 HHHHHHHHHHHHHHHHHHT--EEEEEEEEEEHHHHHHTTTT-SEEEEEE..T-EEESS-HHHHHHHHT--HHHHHHHGGCSGGG--SHHHHHTTT--SE CS
        MdcE  87 ihealahlakalarArlaGhpvigllvGkavsGaflahglqanrlialp..gvqvavmdkasaArvTkrsveaLealaksipvfAydvdnyarlGllee 183
                 ih+ala++a+a+a+ArlaGhpvigl+vGka+sGaflahg+qanrlia++  gv v++m+kasaAr+T+r+veaLe+la++ip++Aydv+nya+lGll++
  CTQ28004.1 110 IHQALAGAAGAYAKARLAGHPVIGLIVGKAMSGAFLAHGYQANRLIAFNdsGVLVHAMGKASAARITLRTVEALEKLAATIPPMAYDVSNYATLGLLSA 208
                 *************************************************9************************************************* PP

                 EEE-S-SSS--HHHHHHHHHHHHH..HHH.......GGG-SGGGHHHHHHHHHHHHH- CS
        MdcE 184 lldveeaealaeallalvaqvlae..kDe.......rrllaaeRggrakvrellravv 232
                 lld+++++a+++++l+lv+++l++  +D+       +rl+a++R+++++vr+++ra++
  CTQ28004.1 209 LLDINNPDAPDDHDLSLVSNTLRDaiADArtdtslkCRLGAKNRRSSQLVRDRMRASW 266
                 ***********************9998889999**********************998 PP

>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   2.1     1e-06     0.009     282     426 ..      27     185 ..      21     204 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1e-06
                     TTEEEEEEEETTEEEEEEEE--S..........EEETTEE-HHHHHHH.HHHH.HHHHH.TT--EEEEE-BSEE--SHHHHHTTHHHHHHHHHHH CS
  Carboxyl_trans 282 ktvVvGfArlgGipvGvvAnetr..........veaGqvlfidsavKa.arfi.rlcda.enlPlviladvrGflvGqrqeyggilkhGaklvda 363
                     ++v v+ ++++G  v ++A+ +            e G  l      K  +++i  + d+  + P+v ++dv+  + G+r+e+ gi ++ a    a
      CTQ28004.1  27 PSVQVADGQINGENVRFIAVVPDannhypraagGEVG-LLEGWTLAKVvNETIaADADQpVKRPIVAVIDVPSQAYGRREEAFGIHQALAGAAGA 120
                     5666777889999999999999999999976554445.6666666665133331456667789************************99999889 PP

                     HHT--...S-EEEEE-TEEEHHHHHTTTGGGSTTTTEEETTT-EEESS-HHHHHHHHSHHHHHHHH CS
  Carboxyl_trans 364 laeak...vPkitvilrkayGGayvvmdskingadlvaawptariaVlgpegaveilfrkekaaae 426
                     +a+a+   +P+i +i++ka  Ga+++ + ++n+  + + +    +  +g + a+ i  r+ +a ++
      CTQ28004.1 121 YAKARlagHPVIGLIVGKAMSGAFLAHGYQANRL-IAFNDSGVLVHAMGKASAARITLRTVEALEK 185
                     888764448*****************99999998.7788877778889999999998888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2034.91
//
Query:       CTQ28005.1  [L=277]
Description: malonate decarboxylase, beta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-16   59.3   0.2    3.4e-16   58.9   0.2    1.0  1  Carboxyl_trans  Carboxyl transferase domain


Domain annotation for each model (and alignments):
>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.2   1.9e-20   3.4e-16      10     217 ..      12     231 ..       9     263 .. 0.86

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 1.9e-20
                     EEEEEHTTSGGGEBEHHHHHHHHHHHHHHHHHT.....EEEEEEEESBETTEEHHHHTTEEEEESSTTSGGGCEEECHHHHHHHHH.....TEEE CS
  Carboxyl_trans  10 areridllldpgsFgeledlffhrvtelgrkkklp...rdgvvtgsGaviGravevvaqdktvlggslgpakgekllkaqeeaika.....gepl 96 
                     arer   lld+gs++el d f   ++    +++++   +dg v   G+++G+  +v+a + t+ ggs+g++ g k+ +a e+a++       ++ 
      CTQ28005.1  12 ARERAHALLDDGSYRELLDPFDGIMSPWLGAQGIVpqsDDGMVVAKGTINGQPAVVIAIEGTFQGGSMGEVSGAKMAAALELAAEDnrngiPTQA 106
                     89**************999998877654444454323379*******************************************999888665566 PP

                     EEEEEE-ESSSGHHSSHHHHHHHHHHHHHHHHHHHCS-EEEEESSE..EETHHHHHHHHTSEEEEETTEEEEESSTHHHHHHHHSSCC-SSCH.. CS
  Carboxyl_trans  97 igindsgGaegriqegveslrgsGkifgenskasgeIpqislvtgr..caGggaYlpalgdrvimveetskifltGpdvikkvlgreevtsee.. 187
                     +   + gG+  r+qe    l+ +++i ++ + + +  p++ ++ g+  c Gg + ++al+   i ++e + ++l Gp+vi++  g ee++s +  
      CTQ28005.1 107 VLCLETGGV--RLQEANLGLAAIADIHAAIVDLRRYTPVVGIIAGTvgCFGGMSIAAALCSYLIVTRE-ARLGLNGPQVIEQEAGIEEYDSRNrp 198
                     778899***..99******************************99777********************.********************998733 PP

                     ...HHHSHHHHTTTTSSSEEESSHHHHHHHHHH CS
  Carboxyl_trans 188 ...lgGatqhmtksGvahltaeddeealelirk 217
                           +  + + sG+++ +++d  +a+++ ++
      CTQ28005.1 199 fiwSMTGGEIRAASGLVDALVNDGVNAVKTAMN 231
                     333356667788899999999998888887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1992.03
//
Query:       CTQ28006.1  [L=99]
Description: Malonate decarboxylase acyl carrier protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-19   70.3   0.0    1.4e-19   70.1   0.0    1.0  1  ACP       Malonate decarboxylase delta subunit (MdcD)


Domain annotation for each model (and alignments):
>> ACP  Malonate decarboxylase delta subunit (MdcD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   7.8e-24   1.4e-19       3      83 .]      17      96 ..      15      96 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 7.8e-24
         ACP  3 talaGtleSsDleVlvepaeeggieielessvekqfgeqieavieetleelgvkaakveinDkGAldcviraRleqAlera 83
                +alaG+++S+D+eVl+++a++ +++++++ sv ++ +++++a+++++    g++a+++ i+D+GA+++v r+R+eq +e+a
  CTQ28006.1 17 RALAGVVGSGDMEVLYTAAQSATLNVQITISV-DNSQARWQALFDRLNLINGLPAGQLIIHDFGATPGVARIRIEQVFEEA 96
                79******************************.********************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 813.08
//
Query:       CTQ28007.1  [L=280]
Description: 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-70  237.9  10.3    2.1e-70  237.6  10.3    1.1  1  CitG      ATP:dephospho-CoA triphosphoribosyl transferase


Domain annotation for each model (and alignments):
>> CitG  ATP:dephospho-CoA triphosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.6  10.3   1.2e-74   2.1e-70       1     281 []      17     276 ..      17     276 .. 0.92

  Alignments for each domain:
  == domain 1  score: 237.6 bits;  conditional E-value: 1.2e-74
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXHHHHHHHHHTTHHHHHHHH..............HH--HHHHHHHHHHHH------HHHHHHHHHHH CS
        CitG   1 aelavlAlllEvsatpKPGlVdrrdsgahdDmdfetFlaSaealapyfeeaaaaGlea...kalfeelrsiGelaekamlaatggvNThkGaifllgll 96 
                 a+ a+++l++E++++pKPGlVd r +gah+D++++++ +Sa++l+p+f+++a++++++    al+e+ +++G++ e++m+ atggvNTh+Gai++lgll
  CTQ28007.1  17 AHTASACLIDEARLSPKPGLVDSRGNGAHQDLNLALMERSARSLQPTFHALAEQSWRRpadIALRETVGRLGREGEAQMMLATGGVNTHRGAIWALGLL 115
                 67899********************************************************99************************************ PP

                 HTTTTS-.......SHHHHHHHHHHHHHT--HHHHHHHHHHHHH-----HHHHHH.TT--HHHHHHTS-TT-HHHHHHHHTSHHHHHHHH........H CS
        CitG  97 aaaagrraaeeeeasleelveeaaevlaeltvedavafrairlakveelkdelvekksltlgevlelsygvdgirgeaasgFpsvfeialpalrealas 195
                 + a+++  +e+   + ++++  aa+ la+l +                     ++ ks + g +++++ +v g+r+ea+ gFp++ ++alp+l++++a+
  CTQ28007.1 116 VSAVAMLGGEG---QSQAIA-DAAAALARLPD-------------------GFAP-KSFSKGLRASRRWQVPGAREEAQCGFPHITRLALPQLQQSRAR 190
                 *****984344...333333.33333444433...................2334.89***************************************** PP

                 H-SSHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH..........H-SHHHHHHHHHHHHHHT---HHHHHHHHHHHHHH CS
        CitG 196 gadlndalvqallallaelpDtnilrrgGaegaeevqeeArallaaggvaaeaglealeeldrelvernisPGgsADllaatlfla 281
                 ga++ +a ++al+a++ +l Dt++l+r+G++g++ +q+ A ++laagg+a+ ag++al++ld+ + ++n sPGg+ADllaatlfl+
  CTQ28007.1 191 GASEPQAQLDALMAIMTSLSDTCVLSRAGMAGLQAMQQGACEVLAAGGCASFAGRAALARLDAIMLAQNASPGGAADLLAATLFLD 276
                 ************************************************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2160.39
//
Query:       CTQ28008.1  [L=551]
Description: malonate decarboxylase, alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-295  980.3   0.0   2.3e-295  980.1   0.0    1.0  1  Mal_decarbox_Al  Malonate decarboxylase, alpha subunit, trans
     0.0062   16.0   0.0      0.012   15.0   0.0    1.5  1  CoA_trans        Coenzyme A transferase


Domain annotation for each model (and alignments):
>> Mal_decarbox_Al  Malonate decarboxylase, alpha subunit, transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  980.1   0.0  2.6e-299  2.3e-295       2     548 .]      11     551 .]      10     551 .] 0.99

  Alignments for each domain:
  == domain 1  score: 980.1 bits;  conditional E-value: 2.6e-299
  Mal_decarbox_Al   2 wdtkreekakrlekvkalakgkvvaaekivelleaviepgdrvvleGdnqkqadflarslakvdpkkvhdlhlvlssvslpehldlfekgiakk 95 
                      w+++r+ek++rl++++  + gkv++++++v++le +++pgdrvvleG+nqkqadfl+r+la+v+p+k+hdlh++++sv ++ehldlfekgia+k
       CTQ28008.1  11 WNRRRTEKQRRLAEAN--MPGKVIPTDQLVSVLENLLAPGDRVVLEGNNQKQADFLSRMLAEVNPQKIHDLHMIMPSVGRSEHLDLFEKGIARK 102
                      ************9866..89************************************************************************** PP

  Mal_decarbox_Al  96 ldfsfaGpqslriaklledgklelgaihtylelyarlfvdliPnvalvaaekadreGnlytGantedtPaiveatafkdgiviaqvneivd... 186
                      ldfsf+G+qslri++lledg le+gaihty+ely+rl+vdl Pnval+a++kadr+GnlytG++tedtPa+vea+af+dgiviaqvne+vd   
       CTQ28008.1 103 LDFSFSGTQSLRISQLLEDGLLEIGAIHTYIELYSRLYVDLSPNVALIAGYKADRKGNLYTGPSTEDTPALVEAAAFHDGIVIAQVNELVDdec 196
                      *******************************************************************************************888 PP

  Mal_decarbox_Al 187 klprvdiPadwvdfvveadkpfaieplftrdPakitevqilmamlaikGiyaeyevkrlnhGiGfdtaaielllPtyaeslGlkgkickhwvln 280
                      +lprvdiP++w+d+vv adkpf+ieplftrdP+ i++ +ilmam+aikGiyae++v++lnhGiGf+taaielllPty+e+lGlkgkickhw+ln
       CTQ28008.1 197 DLPRVDIPGSWIDYVVVADKPFFIEPLFTRDPRLIKQEHILMAMMAIKGIYAEHQVQSLNHGIGFNTAAIELLLPTYGEQLGLKGKICKHWTLN 290
                      8********************************************************************************************* PP

  Mal_decarbox_Al 281 PhPtliPaiesGwvesvhsfGsevGmeeyiaarsdvfftGkdGslrsnralaqlaGqyavdlfiGstlqidlegnsstvtkgrlaGfGGaPnmG 374
                      PhPtliPaiesGwvesvh+fG+e+Gmeeyi+ar+d+fftG+dGs+rsnra++qlaGqyavd+fiGstlq+d  +nsstvt+grl+GfGGaPnmG
       CTQ28008.1 291 PHPTLIPAIESGWVESVHCFGGELGMEEYIRARPDIFFTGPDGSMRSNRAFCQLAGQYAVDMFIGSTLQVDGLANSSTVTRGRLSGFGGAPNMG 384
                      ********************************************************************************************** PP

  Mal_decarbox_Al 375 sdarGrrhaseawlklgeeaaeeedekkelarGrklvvqivetfkekkkPtfvekldalelakkaklelaPvmiygddvthvvteeGiayllka 468
                      +d++Grrha++awl++++e        + ++rG+klvvq+vetf+++ kPtfve+lda+e+ak+++++laPvmiygddvthv+teeGiayl++a
       CTQ28008.1 385 HDPHGRRHATPAWLNMITE-------PDPMQRGKKLVVQMVETFQAGVKPTFVETLDAVEVAKTSGMPLAPVMIYGDDVTHVLTEEGIAYLYRA 471
                      *****************43.......3469**************************************************************** PP

  Mal_decarbox_Al 469 esleereqairavaGvtevGlkrdkkeveklrergivkrpedlgierkeakrsllaaksikdlvewsgglyepPakfrnw 548
                      esleer+++++avaG+t++Gl  d+k+v++lr++g+v +pedlgi+r++a+rsllaa s+++lvews+gly+pPakfr w
       CTQ28008.1 472 ESLEERRAMVAAVAGITDIGLGVDAKRVAALRQSGKVVYPEDLGIRRSDATRSLLAAGSVAELVEWSDGLYNPPAKFRCW 551
                      *******************************************************************************9 PP

>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.4e-06     0.012     149     217 .]     145     214 ..     139     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.4e-06
                 EEEEEEECCEEETTCSEESSGGGHTTHSHHHHH..HEEEEEEEEEEEECTTSSECCCESBTGGGHSEEEET CS
   CoA_trans 149 advalikaskadeegnlvfeksagnfnkpaiae..aakvtileveeivekgkldpekvliPgvlvdavvea 217
                 + vali  +kad++gnl    s+  + +++ a     +++i++v e+v   + d  +v+iPg+ +d+vv+a
  CTQ28008.1 145 PNVALIAGYKADRKGNLYTGPSTEDTPALVEAAafHDGIVIAQVNELV-DDECDLPRVDIPGSWIDYVVVA 214
                 569**************999888888877655466689*********9.67778889************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4018.29
//
Query:       CTQ28009.1  [L=344]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-69  235.0  44.9    1.4e-69  234.8  44.9    1.0  1  AI-2E_transport  AI-2E family transporter


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.8  44.9   7.8e-74   1.4e-69       2     326 ..      14     328 ..      13     329 .. 0.98

  Alignments for each domain:
  == domain 1  score: 234.8 bits;  conditional E-value: 7.8e-74
  AI-2E_transport   2 llilvllllllalypfiselllplliAlvlayllnpvvkfLkkrgvkrvlavllvlllllvllvllvlllvplliaqltqlvkslpayidslqn 95 
                      +++l +l+++l  + f++++++p+++Al+l++++np+v+ L +++v+rvla++l++ l+++l+++l+++l+    ++l++l ++lp+y + l +
       CTQ28009.1  14 VIMLGMLVIILTGIRFAADIIVPFILALFLSVIINPLVQLLVRCRVPRVLAISLLIGLIVMLAIVLLASLG----TSLNELARTLPQYRNYLYE 103
                      688999*****************************************************************....******************* PP

  AI-2E_transport  96 ilnelpslleelenliqalkqslskilsnilssilnsllsllasllglilslvlvllllffllldgeklrqgilkllpervrervkailrelek 189
                       ++++  +l++       +  s+ +  + i+++ +++l++ l + l+ ++s +++lll+++++l +   ++ +l+ l++r  e + ai r++++
       CTQ28009.1 104 PMQTIAPWLQRM-----GFTVSVVELNKYIDPNAVMTLVTSLLTQLSNAMSSIFLLLLTVVFMLLEVPQLPAKLQQLMSRPVEGMGAIQRAIDS 192
                      ************.....5********************99999999999999999999999999999999999999*****************9 PP

  AI-2E_transport 190 tlsgylrgqvlvaliigvlvfigllilgvpyalllailvglanliPyiGavivlipiaiialltggikevlivlivvllvqliegnilePklmg 283
                       +s+yl  ++ ++li+g++v+ +l++l v++a+++++l++ +n+iP+iG+v+++ip+++++l++gg +e+l+vl+++l+v+l+ gnileP++mg
       CTQ28009.1 193 -VSHYLVLKTAISLITGLVVWGMLVLLDVRFAFMWGLLAFALNYIPNIGSVLAAIPPILQVLVFGGLYEALVVLAGYLIVNLVFGNILEPRIMG 285
                      .7******************************************************************************************** PP

  AI-2E_transport 284 krlglhplvillsllaggklfGlvGlilavpltavikaileay 326
                      ++lgl++lv++lsl+++g+l+G+vG++l+vplt+++k +le++
       CTQ28009.1 286 RGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQT 328
                      ***************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       930  (0.0518713); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2489.43
//
Query:       CTQ28010.1  [L=61]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 478.03
//
Query:       CTQ28011.1  [L=120]
Description: multidrug efflux system transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-25   87.1  13.5    9.2e-25   87.1  13.5    1.3  1  Multi_Drug_Res  Small Multidrug Resistance protein
  ------ inclusion threshold ------
      0.048   13.9  10.0      0.055   13.7  10.0    1.0  1  UPF0060         Uncharacterised BCR, YnfA/UPF0060 family
       0.15   11.0   5.5       0.16   10.9   5.5    1.0  1  CRT-like        CRT-like, chloroquine-resistance transporter-
       0.43   10.8  19.3       0.68   10.1  19.3    1.4  1  EamA            EamA-like transporter family


Domain annotation for each model (and alignments):
>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1  13.5   2.1e-28   9.2e-25       2      92 ..       3      93 ..       2      94 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 2.1e-28
                    X-HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH CS
  Multi_Drug_Res  2 nwvllvlAillevvgailLklsegftkltpsllvivgygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslkkliglal 92
                     w+ll+lAi++e++g++++k+++ +   t ++l+++++++s+++L++a+k++ ++vAYa+w+GiG++li+l+++llf+eslsl k++gl++
      CTQ28011.1  3 YWILLALAIIAEITGTLSMKWASVSGGHTGFILMLAMIALSYIFLAFAVKKIALGVAYALWEGIGILLITLFSVLLFDESLSLLKIAGLTT 93
                    7***************************************************************************************986 PP

>> UPF0060  Uncharacterised BCR, YnfA/UPF0060 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7  10.0   1.2e-05     0.055       7     103 ..       6     103 ..       1     107 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
     UPF0060   7 lfllaalaeigGay.lvwlwlreaksvllalvaaillavygflatlqpaafGrvyaayGGvfvvlallwglvvdgvkldlydwiGalialvGvlvily 103
                 l+ la +aei+G+  + w  +  +++ +++++a i+l+   +  +++  a G +ya + G+ ++l  l+ +++ +  l l+ + G    ++G+++i  
  CTQ28011.1   6 LLALAIIAEITGTLsMKWASVSGGHTGFILMLAMIALSYIFLAFAVKKIALGVAYALWEGIGILLITLFSVLLFDESLSLLKIAGLTTLVIGIVLIKS 103
                 5667899*****96478999*9999999999999999855555578889************************99*****************999865 PP

>> CRT-like  CRT-like, chloroquine-resistance transporter-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   5.5   3.6e-05      0.16      43     150 ..       6     113 ..       1     119 [. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.6e-05
    CRT-like  43 piffavvlykllltndipketrsfpkrkFaimgaLDavsgilvvigavsts.GslqvllnqaiipitllasllllkerysliqylGAlviilgvvvvli 140
                  + +a ++  ++ t ++ +   s  +  F++m a+ a+s i+  ++  +++ G+   l + + i ++ l+s+ll  e  sl+++ G + +++g+v++++
  CTQ28011.1   6 LLALA-IIAEITGTLSMKWASVSGGHTGFILMLAMIALSYIFLAFAVKKIAlGVAYALWEGIGILLITLFSVLLFDESLSLLKIAGLTTLVIGIVLIKS 103
                 44444.4446777777777777778899***************999988765999999999*********************************97776 PP

    CRT-like 141 psllgesseg 150
                  +    ss++
  CTQ28011.1 104 GTQKKASSKQ 113
                 6665555554 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  19.3   0.00015      0.68      43     135 ..       7     101 ..       1     103 [. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
        EamA  43 illliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnasli.tslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 ++l iia +++    ++ s+++    ++l l  ++l ++++  a+kk+  ++a  +   +  ++++++svll+ e+l+l++++g+   ++G++li
  CTQ28011.1   7 LALAIIAEITGTLSmKWASVSGGHTGFILMLAMIALSYIFLAFAVKKIALGVAYALwEGIGILLITLFSVLLFDESLSLLKIAGLTTLVIGIVLI 101
                 34444444444444544555554444666666899******************999899**********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       966  (0.0538792); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 863.56
//
Query:       CTQ28012.1  [L=109]
Description: multidrug efflux system transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-28   97.8   7.5    5.5e-28   97.5   7.5    1.1  1  Multi_Drug_Res  Small Multidrug Resistance protein
    0.00029   21.0   9.8    0.00037   20.7   9.8    1.2  1  EamA            EamA-like transporter family
     0.0021   18.1   0.1     0.0025   17.8   0.1    1.2  1  TMEM234         Putative transmembrane family 234
  ------ inclusion threshold ------
      0.057   12.6   0.5      0.057   12.6   0.5    1.7  2  Nuc_sug_transp  Nucleotide-sugar transporter
      0.084   13.0   1.1      0.084   13.0   1.1    2.3  2  DUF3493         Low psii accumulation1 / Rep27
       0.12   12.6   9.5       0.24   11.7   9.6    1.5  1  UPF0060         Uncharacterised BCR, YnfA/UPF0060 family
       0.33   11.3  12.9        1.2    9.4   1.5    2.1  2  DUF4064         Protein of unknown function (DUF4064)
        2.1    8.8   7.1        9.5    6.7   7.1    1.8  1  DUF805          Protein of unknown function (DUF805)
        3.2    8.6   6.5       0.27   12.0   1.1    1.9  2  DUF751          Protein of unknown function (DUF751)


Domain annotation for each model (and alignments):
>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   7.5   2.7e-31   5.5e-28       3      93 .]       6      99 ..       4      99 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 2.7e-31
                    -H...HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH CS
  Multi_Drug_Res  3 wv...llvlAillevvgailLklsegftkltpsllvivgygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslkkliglali 93
                    w+   +l++Ai+le++++++Lk+s+gf++++  +l +++++ +f+ Ls+a+k +++svAYa+w G+G+++++++g++lfg++l+ k+++g++l+
      CTQ28012.1  6 WIhaaWLAIAIVLEIIANVFLKFSDGFRRKIYGILSLAAVLGAFSALSQAVKGIDLSVAYALWGGFGIAATIAAGWVLFGQRLNNKGWAGVILL 99
                    66666**************************************************************************************996 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   9.8   1.8e-07   0.00037      40     135 ..      13     106 ..       4     108 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.8e-07
        EamA  40 iagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnasli.tslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 + +i+l iia ++ +  + ++    +++ +l+l +++ af+++ +a+k ++ s+a  +   +  + t+  +++l+g++l+ k ++g++l ++G +li
  CTQ28012.1  13 AIAIVLEIIANVFLKFSDGFR---RKIYGILSLAAVLGAFSALSQAVKGIDLSVAYALwGGFGIAATIAAGWVLFGQRLNNKGWAGVILLVAGMVLI 106
                 344444444333333332333...455677777778889999************999889***********************************98 PP

>> TMEM234  Putative transmembrane family 234
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.3e-06    0.0025      64     115 ..      55     106 ..      18     107 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.3e-06
     TMEM234  64 llgkadlslavpiaNslafvfTvltelllgekvlkkktvlgmllvvvgialc 115
                 +++ +dls+a ++     +++T+  +++l  + l++k ++g++l v+g++l+
  CTQ28012.1  55 AVKGIDLSVAYALWGGFGIAATIAAGWVLFGQRLNNKGWAGVILLVAGMVLI 106
                 57789********************************************997 PP

>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.27   5.4e+02     278     291 ..      13      26 ..       6      56 .. 0.59
   2 ?   12.6   0.5   2.9e-05     0.057     119     155 ..      72     108 ..      55     109 .] 0.86

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.27
  Nuc_sug_transp 278 slaiilstvasvll 291
                     ++ai+l  +a v+l
      CTQ28012.1  13 AIAIVLEIIANVFL 26 
                     45666666665554 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.9e-05
  Nuc_sug_transp 119 kilttalfsvllLkrklskkqWlslllLvaGvalvql 155
                      i +t +   +l +++l++k W+ ++lLvaG++l++l
      CTQ28012.1  72 GIAATIAAGWVLFGQRLNNKGWAGVILLVAGMVLIKL 108
                     5788888889999********************9976 PP

>> DUF3493  Low psii accumulation1 / Rep27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.1   4.2e-05     0.084      17      45 ..      31      59 ..      30      66 .. 0.91
   2 ?    3.5   1.2     0.041        82      21      38 ..      66      83 ..      61      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.2e-05
     DUF3493 17 glRlflYlafaaSaliGalifllrllaar 45
                g+R+ +Y+ +  +a++Ga+ +l++++++ 
  CTQ28012.1 31 GFRRKIYGILSLAAVLGAFSALSQAVKGI 59
                68************************997 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.041
     DUF3493 21 flYlafaaSaliGalifl 38
                +l+++f+++a+i+a  +l
  CTQ28012.1 66 ALWGGFGIAATIAAGWVL 83
                79**********986555 PP

>> UPF0060  Uncharacterised BCR, YnfA/UPF0060 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   9.6   0.00012      0.24      19     102 ..      24     107 ..       6     109 .] 0.69

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
     UPF0060  19 aylvwlwlreaksvllalvaaillavygfl.atlqpaafGrvyaayGGvfvvlallwglvvdgvkldlydwiGalialvGvlvil 102
                  +l +    + k   ++ +aa+ l+ ++ l ++++  +   +ya +GG  ++++++ g+v+ g +l+   w G +  ++G+++i 
  CTQ28012.1  24 VFLKFSDGFRRKIYGILSLAAV-LGAFSALsQAVKGIDLSVAYALWGGFGIAATIAAGWVLFGQRLNNKGWAGVILLVAGMVLIK 107
                 4555443333333333333333.4444433145566778899***************************************9985 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.5   0.00062       1.2      58      98 ..       2      46 ..       1      52 [. 0.80
   2 ?    7.5   4.2    0.0025         5      60     100 ..      61     105 ..      50     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00062
     DUF4064 58 stllivlgvialiaivlgivgalllk....knkkvsGilfiiaai 98
                +++ ++ + ++ iaivl i++ ++lk      +k+ Gil ++a +
  CTQ28012.1  2 QQFEWIHAAWLAIAIVLEIIANVFLKfsdgFRRKIYGILSLAAVL 46
                677899999*****************7665556699999887654 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0025
     DUF4064  60 llivlgvialiaivlgivgalllk...knkk.vsGilfiiaails 100
                 l +++++++ + i+++i++ ++l     n+k  +G+++++a+ ++
  CTQ28012.1  61 LSVAYALWGGFGIAATIAAGWVLFgqrLNNKgWAGVILLVAGMVL 105
                 6778999999999999999999997774555699*******9986 PP

>> DUF805  Protein of unknown function (DUF805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   7.1    0.0048       9.5       2      78 ..      26     103 ..       2     109 .] 0.63

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0048
      DUF805   2 fdfkGRasRsefwwfvlfllllvivlallaavlaa..aavasalsvvlallllvps.lavtvRRlHDtgrsgwllllllv 78 
                 ++f++  +R+ + +  l+ +l  +  ++l+ ++++    va al   +++++++ + + ++ +Rl   g+ g++ll++ +
  CTQ28012.1  26 LKFSDGFRRKIYGILSLAAVLGAF--SALSQAVKGidLSVAYALWGGFGIAATIAAgWVLFGQRLNNKGWAGVILLVAGM 103
                 456666777777666665555444..355555544565566666666666666655699999***999999997654433 PP

>> DUF751  Protein of unknown function (DUF751)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.1   0.00013      0.27      12      56 ..      13      57 ..      12      59 .. 0.94
   2 ?   -1.1   0.4       1.6   3.3e+03      39      48 ..      94     103 ..      70     108 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
      DUF751 12 fitillGiflalfeplkpllknpvtaialigllvgglaflyftLr 56
                +i+i+l i+ ++f ++   +++++  i+ + +++g+++ l++ ++
  CTQ28012.1 13 AIAIVLEIIANVFLKFSDGFRRKIYGILSLAAVLGAFSALSQAVK 57
                599*************************************98765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
      DUF751  39 aligllvggl 48 
                 a ++llv+g+
  CTQ28012.1  94 AGVILLVAGM 103
                 3344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 784.18
//
Query:       CTQ28013.1  [L=270]
Description: putative exported metallopeptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-08   35.0   0.1      3e-07   30.5   0.1    2.3  1  Trypsin    Trypsin
    7.1e-07   30.2   0.0    1.1e-06   29.6   0.0    1.3  1  Trypsin_2  Trypsin-like peptidase domain
  ------ inclusion threshold ------
      0.049   13.5   0.0      0.072   12.9   0.0    1.3  1  DUF5545    Family of unknown function (DUF5545)


Domain annotation for each model (and alignments):
>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.1     5e-11     3e-07       8     199 ..      46     241 ..      41     262 .. 0.65

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 5e-11
                 TTTSSTTEEEEEETTC.EEEEEEEEEETTEEEEEGGGTTT..............GGGEEE....EESE.S....BTTSCTTTEEEEEEEEEEEETTEBT CS
     Trypsin   8 qkgsfpwqvslsvksg.khlCgGslisenwvlTAaHCvsn..............asdvkv....vlge.h....nlkksegkeqklkvekvivhpnynp 82 
                 +++++pw +  ++++  + lC+++lis++  lTA+HC+                          ++ e h    +++ s g   k++ +  iv p   +
  CTQ28013.1  46 RPEESPWDAIGQLETAsGNLCTATLISPHLALTAGHCLLTpprgkpdkavalrfI----SrkgnWVYEiHgidgRVDPSLGRRLKADGDGWIV-PSAAA 139
                 5677899998888888889*********************999966444444441....0444433333300003444555566666666555.44444 PP

                 TTTTTTEEEEEESSSSTSBSSBHCCBBCS......TTHTTSTTTEEEEEESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSB CS
     Trypsin  83 stldnDiallklkepvklgdtvrpiclpa......assslpvgttclvsGwgrtkekgksdtlqevevpvvsretcksaykgkvtenmlcagakeggkd 175
                      D++l+ l+      + + pi l        + +  ++ +++++sG++        d+l      ++s+++c  +          ++     + d
  CTQ28013.1 140 P---SDFGLIVLRYA---PSGITPIPLFPgskadlTAALKAADRKVTQSGYPE-------DHLD----NLYSHQDCIVT-------GWAQTSVLSHQCD 214
                 4...49999999998...88999999988333333222224444444444444.......4444....47788899884.......3333333334459 PP

                 CTTTTTTSEEEETTT...EEEEEEEEE CS
     Trypsin 176 acqGDSGGPlvcsdg...elvGivswg 199
                 + +GDSG+Pl+ +++   +++ + s  
  CTQ28013.1 215 TLPGDSGSPLLLKTEdgwQVIAVQSSA 241
                 999*********999888888888865 PP

>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.9e-10   1.1e-06       1     150 []      66     237 ..      66     237 .. 0.59

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.9e-10
   Trypsin_2   1 GsGflvgsdglilTnaHvv...........................dsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpp 72 
                 +++ l+++++  lT+ H++                           ++ dg ++     ++ +a  dg+ vp +   +d    l +l+    +++g+ p
  CTQ28013.1  66 CTATLISPHL-ALTAGHCLltpprgkpdkavalrfisrkgnwvyeiHGIDGRVD-PSLGRRLKADGDGWIVPSAAAPSD--FGLIVLRY---APSGITP 157
                 5889999**9.********86665433333333333322222222211111111.111222223333333333333333..55556666...******* PP

   Trypsin_2  73 lplgpsealkgg.......epvyvvGyplggeksg.svssGivsgvvesesaasgegesflqtdaatspGsSGGplfd.sd..GrvvGl 150
                 +pl p ++++ +       ++v+  Gyp    ++  s ++ iv+g  +         +s+l ++++t pG SG+pl+  ++  ++v+++
  CTQ28013.1 158 IPLFPGSKADLTaalkaadRKVTQSGYPEDHLDNLySHQDCIVTGWAQ---------TSVLSHQCDTLPGDSGSPLLLkTEdgWQVIAV 237
                 **8885544444445556689999999966555434888888888888.........9999***************9643356788876 PP

>> DUF5545  Family of unknown function (DUF5545)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.2e-05     0.072      81     151 ..     183     255 ..     115     266 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.2e-05
     DUF5545  81 lrlrdhldh.fsilmtsctswlqapqapglcrd.eqlsgapillpdlegtklnnfqessplphkherkdkrgt 151
                     dhld  +s     +t w q+      c      sg+p+ll   +g ++  +q s+p p+ + r d+r  
  CTQ28013.1 183 GYPEDHLDNlYSHQDCIVTGWAQTSVLSHQCDTlPGDSGSPLLLKTEDGWQVIAVQSSAPGPQDRWRADNRAI 255
                 5557999973567777889*****99999997624679*******************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2153.56
//
Query:       CTQ28014.1  [L=36]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      198  (0.0110436); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 288.28
//
Query:       CTQ28015.1  [L=34]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 286.60
//
Query:       CTQ28016.1  [L=139]
Description: acid shock-inducible periplasmic protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        3.7    6.5  13.3        4.1    6.3  13.3    1.0  1  SLC12           Solute carrier family 12
          4    7.7  16.5        6.8    6.9  16.5    1.3  1  MMR1            Mitochondrial Myo2 receptor-related protein
        4.5    5.9  16.8        5.1    5.7  16.8    1.1  1  Presenilin      Presenilin
        7.7    6.6  27.2        8.7    6.4  27.2    1.0  1  CCSAP           Centriole, cilia and spindle-associated


Domain annotation for each model (and alignments):
>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  13.3   0.00091       4.1     144     230 ..      42     122 ..       4     137 .. 0.26

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00091
       SLC12 144 eaeesekeeeekkkakkkklleekskekeekekleekdsnlslseekkeeekekkkekkkkkekkeklkkkekslllkeaskeekev 230
                 ++++      +++ka+ k ++e+k++  ++++k e+k   ++  + +k+++k ++k++  +k +  k+++k  ++  +++ ++ k++
  CTQ28016.1  42 THHK------KHHKAAAKPAAEQKAQAAKKHKKAEAKPAAAQKAQAAKKHKKVAAKPAAPQKAQAAKKHHKAAAKPAAQKAQAAKKH 122
                 1111......11111111111111111111111111111111111111111111111111111111111111111111111111111 PP

>> MMR1  Mitochondrial Myo2 receptor-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  16.5    0.0015       6.8      55     174 ..      10     130 ..       4     138 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0015
        MMR1  55 Sallknsskntenskkaseqeatgskqnnekelnvekskiskltiketleqlre.eksqqksksaekekqkrsvaakseqesekveeleksksereise 152
                  a +  ss  +++  +++ q   +++++  k++  +++k  k   k++ eq  + +k+++k++ + ++ qk ++a+k+++   k+ +++k +++++  +
  CTQ28016.1  10 AAAMGLSSAAFAADAVSTTQAPAATHSTAAKTT--HHKKHHKAAAKPAAEQKAQaAKKHKKAEAKPAAAQKAQAAKKHKKVAAKPAAPQKAQAAKKHHK 106
                 455667778888888888888888888775533..4444589999999999855455555555555566666666666665555555555444443333 PP

        MMR1 153 tss..aiSestlleledletteae 174
                  +   a  ++++  ++++ t +++
  CTQ28016.1 107 AAAkpAAQKAQAAKKHHKTTKHQA 130
                 322002223333333322233333 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  16.8    0.0011       5.1     217     304 ..      36     123 ..       6     138 .. 0.39

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0011
  Presenilin 217 satvvvlaaeek.kaevaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessessee 304
                 s+++++++++++ ka++++++e++++ +kk++++e++ +++++ ++++k+++ +++ +  +++++++++++++ +  ++ +++  ++++
  CTQ28016.1  36 STAAKTTHHKKHhKAAAKPAAEQKAQAAKKHKKAEAKPAAAQKAQAAKKHKKVAAKPAAPQKAQAAKKHHKAAAKPAAQ-KAQAAKKHH 123
                 3333333222222333334444444444444444444444444444444333333222222222222111111111111.111111111 PP

>> CCSAP  Centriole, cilia and spindle-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  27.2    0.0019       8.7      48     196 ..      28     134 ..      12     139 .] 0.35

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0019
       CCSAP  48 sssdssgssspssssknkvepeeskkevkleeeeee.keeeraaaeeeekaseeeteekevkekekqqakaeasksekekkekekseskqqkpkssala 145
                 +++  + +s+  +++++k +++ ++k+++++++++  k+++++a++++++++++++++k+v  k                                   
  CTQ28016.1  28 TQAPAATHSTAAKTTHHKKHHKAAAKPAAEQKAQAAkKHKKAEAKPAAAQKAQAAKKHKKVAAK----------------------------------- 91 
                 2333333333333333333333333333333333321112222222222233333333333333................................... PP

       CCSAP 146 krekrksakspqqpsekkkenrhPfalygwgekqadtgsr..kThnvsasast 196
                           p  p++ + +++h  a+   + ++a+ +++  kT + +a+++t
  CTQ28016.1  92 ----------PAAPQKAQAAKKHHKAAAKPAAQKAQAAKKhhKTTKHQAAKPT 134
                 ..........3333333333333333332222222222221244444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3059  (0.170617); expected 358.6 (0.02)
Passed bias filter:                      689  (0.0384294); expected 358.6 (0.02)
Passed Vit filter:                       218  (0.0121591); expected 17.9 (0.001)
Passed Fwd filter:                       101  (0.00563333); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.43
# Mc/sec: 971.24
//
Query:       CTQ28017.1  [L=123]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 946.87
//
Query:       CTQ28018.1  [L=495]
Description: putative thermostable carboxypeptidase 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.7e-170  565.5   0.0   1.1e-169  565.3   0.0    1.0  1  Peptidase_M32  Carboxypeptidase Taq (M32) metallopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M32  Carboxypeptidase Taq (M32) metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  565.3   0.0  6.1e-174  1.1e-169       2     488 .]      10     494 ..       9     494 .. 0.98

  Alignments for each domain:
  == domain 1  score: 565.3 bits;  conditional E-value: 6.1e-174
  Peptidase_M32   2 lkellkkvsalesasallewDketvmpkkgaearaeqlatLselahelltseevaellekleeekeeldekekavveelkreykkakkvpaelvea 97 
                    l+ +++++s  ++ +a+  wD+  +mp++g  ar+e+la L  l+h++lt+++v+++l+++++++++++  e+a+++e++r+y++a+ +p++lvea
     CTQ28018.1  10 LTRTFQRLSRFSHLAAIAGWDMFAMMPPGGRVARSEALAELGVLQHQILTDKKVGQWLQEARQQDLNDV--EQANLREMQRQYDQAALLPESLVEA 103
                    78899************************************************************9886..8************************ PP

  Peptidase_M32  98 lakasakaeaaWreareandfalfepsLeevielkreiaell.edlkkspYdaLldeyepgltvekidalFeelkealvpllkkikeskekekkdk 192
                    ++ a +++e+aWr++r and++ f+++L+ev++l+r++a+++ +  + s YdaLld +ep++t++++d+lF++lk++l  ll+++ e+++k  ++ 
     CTQ28018.1 104 KSLAGSRCEHAWRSQRPANDWTGFADNLREVVRLSRQEAQIRaDARGGSRYDALLDIFEPDMTSARLDSLFADLKSWLPSLLSQAVEKQAK--QTL 197
                    ******************************************999***************************************9999983..334 PP

  Peptidase_M32 193 sflereipeekqrelsrellkalgfdfdrgrldeseHPFttsfsrkDvRittryeednllsslfsvlHEaGHalYeqnlpeelsktplgggvslgi 288
                       ++++p+++qrel+ + ++ lgfdfd grld s+HPF+ +  ++DvRittry+e++lls+lf+v+HE+GHa Yeqnlp+ + ++p+g ++s +i
     CTQ28018.1 198 IAPQGPFPIAEQRELGLQAMRILGFDFDGGRLDISAHPFCGG-VPQDVRITTRYNENDLLSALFGVIHETGHARYEQNLPRPWVDQPVGLARSTAI 292
                    4889**************************************.88*************************************************** PP

  Peptidase_M32 289 hEsqSrlyEniigrskeFwevllpklkeafpeqlddvsleefyeavnkvepsliRveADEltYslHillRyelEkeliegklsvkdlpeaWnekyk 384
                    hEsqS+++E+++grs++F++ llp ++e+f+++ + +s+e+f++  ++v+p++iRv+ADE++Y++H++lRye+E++li+g+++v+d+p++W+ek++
     CTQ28018.1 293 HESQSLFFEMQLGRSERFLNRLLPAVRERFGDRPA-FSQENFVAWNQQVKPGFIRVDADEVSYPAHVILRYEIERALIDGEIEVDDIPSLWDEKMQ 387
                    ********************************988.************************************************************ PP

  Peptidase_M32 385 eyLgidpp.ddaeGvLQDvHWssgafGYFPtYalGniyaaqlfeamekdlpel..eiakgefseikkWLkenihqkGslysseellkkatgeslna 477
                    + Lg+  + + ++G++QD+HW +g fGYFP+Y+lG++yaaql+ a++++lp l  +i++g+fs + +WL++ni+q+Gs+ ++++l+++atge+ln+
     CTQ28018.1 388 HWLGLSTTgNYRDGCMQDIHWTDGGFGYFPSYTLGAMYAAQLMAAARRALPTLdrDIEEGDFSALFDWLRQNIWQHGSRFTTSQLIQQATGEDLNS 483
                    *****98879****************************************9999999*************************************** PP

  Peptidase_M32 478 eyyidyLkeky 488
                    +y+ ++L+ +y
     CTQ28018.1 484 RYFREHLTTRY 494
                    ********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3605.96
//
Query:       CTQ28019.1  [L=416]
Description: putative transporter; MFS type [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-36  125.9  66.2    2.3e-28   99.1  29.5    2.0  2  MFS_1       Major Facilitator Superfamily
    4.6e-10   38.9  14.9    4.6e-10   38.9  14.9    2.1  2  Sugar_tr    Sugar (and other) transporter
     0.0015   17.4  10.1     0.0015   17.4  10.1    2.9  3  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1  29.5   3.9e-32   2.3e-28       1     229 [.      41     260 ..      41     276 .. 0.84
   2 !   30.2  36.3   3.5e-11   2.1e-07       6     166 ..     248     406 ..     243     412 .. 0.78

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 3.9e-32
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 l+ a++ +++  +++ p+lp  l++++g+sp++ ++ l++ ++  av+ l++G+lsd +Gr++v++++lll a ++ll ++  ++w  +l++r+l Gl 
  CTQ28019.1  41 LFSAGLATFALLYCVQPILP-VLSNEFGVSPASSSISLSISTAMLAVGLLFTGPLSDAIGRKPVMVTALLLAACCSLLSTM-MTSWhGILIMRALIGLS 137
                 578889999999********.******************************************************666666.67898************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplv 197
                  ++++++g++++++  +++  ++ +gl+ +g+s+G + g ll g++++ +gWr++  ++ +++l a+++  ++   +++++ r+++ +      ++ l+
  CTQ28019.1 138 LSGVAAVGMTYLSEEIHPSFVAFSMGLYISGNSIGGMSGRLLTGVFTDFFGWRVALAAISGFALAAAIM--FWRILPESRHFRPTSLRP-----KTLLI 229
                 ******************************************************************998..777777777777777666.....78888 PP

       MFS_1 198 pawkallkdpvlw......illialllfffgfsglltl 229
                 + +++ ++d+ l       +ll++      +f +l+ +
  CTQ28019.1 230 N-FRLHWRDRGLPllfiegFLLMG------AFVTLFNY 260
                 8.9999999955311122222222......22222222 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 3.5e-11
       MFS_1   6 flsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagal 102
                 fl + a+ +l+  +   ++++   +s +++gll ++ +l+  ++s+ +G+++ rfGr +v+l   ++++ glll lf sslw +++ + +l ++g  a+
  CTQ28019.1 248 FLLMGAFVTLFNYIGYrLMMSPWSLSQAVVGLLSVA-YLTGTWSSPKAGAMTVRFGRGPVMLGFTAVMLCGLLLTLF-SSLWlIFIGM-LLFSAGFFAA 343
                 555555555555555556666666777788886665.567899****************999999999999566669.****555555.5555554467 PP

       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv 166
                  +++ ++i   + +  rg+a +l+  ++ lG+ l+  lgg++ +++gW +v  ++a+++l a++
  CTQ28019.1 344 HSVASSWIGPRARR-ARGQASSLYLFSYYLGSSLAGTLGGVFWHHYGWNGVGGFIALLLLAALL 406
                 77777777777777.********************************************99966 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9  14.9   7.8e-14   4.6e-10      47     197 ..      72     217 ..      37     223 .. 0.91
   2 !    5.0  16.1    0.0015       9.1      49     182 ..     277     405 ..     241     412 .. 0.76

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 7.8e-14
                 HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHH CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyql 145
                  s++++si  +  ++G lf+g+l+d +GRk+++++a +l+  +++l+ + +   s+  ++++R l+G+++ ++ ++  +y+sE  +++   + ++ly +
  CTQ28019.1  72 SSSISLSISTAMLAVGLLFTGPLSDAIGRKPVMVTALLLAACCSLLSTMMT---SWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYIS 167
                 56778888888889*************************************...********************************************* PP

                 HHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHH.HHHGGGS---HHH CS
    Sugar_tr 146 aitfGilvaaifglglnktsnadgwrillglqlvpalll.lilllflPESPry 197
                 + ++G + +  ++ ++ ++ +   wr+ l+  + +al+  ++++  lPES ++
  CTQ28019.1 168 GNSIGGMSGRLLTGVFTDFFG---WRVALAAISGFALAAaIMFWRILPESRHF 217
                 *********************...*****999999987615566799***877 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0015
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlai 147
                   ++s++++ ++ +s  ag ++ rfGR +++l ++++++ g +l+ ++     ++++++g +l   g  +a  +++ +i+  A  + Rg+  sly +++
  CTQ28019.1 277 VGLLSVAYLTGTWSSPKAGAMTVRFGRGPVMLGFTAVMLCGLLLTLFSS----LWLIFIGMLLFSAGFFAAHSVASSWIGPRAR-RARGQASSLYLFSY 370
                 23344555555666777899999**************************....*****************************96.68************ PP

                 HHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHH CS
    Sugar_tr 148 tfGilvaaifglgl.nktsnadgwrillglqlvpal 182
                  +G  +a ++g ++  +++  +g   +++l l+ al
  CTQ28019.1 371 YLGSSLAGTLGGVFwHHYGW-NGVGGFIALLLLAAL 405
                 *******9999999555555.555555555544443 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.8   9.2e-06     0.055      12      80 ..      49     116 ..      45     120 .. 0.90
   2 !   17.4  10.1   2.6e-07    0.0015     254     380 ..      65     190 ..      61     195 .. 0.92
   3 !    3.4  13.9    0.0047        28     293     378 ..     306     389 ..     244     392 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.2e-06
  MFS_1_like  12 faalgsllPYltiylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlfl 80 
                 fa l +++P l +  ++ g++++ + i ++i  ++  ++ +++g+l+D +g+ k+v++ +lll+a++ l
  CTQ28019.1  49 FALLYCVQPILPVLSNEFGVSPASSSISLSISTAMLAVGLLFTGPLSDAIGR-KPVMVTALLLAACCSL 116
                 9999*********************************************985.7888888888887765 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 2.6e-07
  MFS_1_like 254 elgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqg 352
                 e g s    ++ + + +++  + ++f   l + +G   ++++all+ +   ll  +++++  +l++ +L g+s+  + a++++y s+ + +s  a+ +g
  CTQ28019.1  65 EFGVSPASSSISLSISTAMLAVGLLFTGPLSDAIGRKPVMVTALLLAACCSLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMG 163
                 67889999999999999999999**********************99998888888899999************************************* PP

  MFS_1_like 353 llsglyfglGralGsliGGllwdlksai 380
                 l+ +   ++G+ +G l+ G++ d ++ +
  CTQ28019.1 164 LYISG-NSIGGMSGRLLTGVFTDFFGWR 190
                 **876.89************99888765 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.0047
  MFS_1_like 293 liiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgl.lsglyfglGralGsliGGllwdlks 378
                 ++++++a++l  ll+ +++++wl+++  +L ++ f + +++a +++    p+  +a+gq+  l  +++ lG+ l   +GG++w +++
  CTQ28019.1 306 VMLGFTAVMLCGLLLTLFSSLWLIFIGMLLFSAGFFAAHSVASSWIG---PRARRARGQASsLYLFSYYLGSSLAGTLGGVFWHHYG 389
                 57899999999999****************************99998...8888888888524567788**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3007.19
//
Query:       CTQ28020.1  [L=300]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-43  148.1   2.9    3.1e-43  147.6   2.9    1.2  1  LysR_substrate  LysR substrate binding domain
    3.1e-22   78.3   3.0      5e-22   77.6   1.4    2.2  2  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   2.9   3.4e-47   3.1e-43       2     207 ..      89     295 ..      88     297 .. 0.96

  Alignments for each domain:
  == domain 1  score: 147.6 bits;  conditional E-value: 3.4e-47
                     TTSCEEEEEEEECCCH.HHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSS CS
  LysR_substrate   2 gglrgrLrigapptla.ryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargep 95 
                      g++g+Lrig+++++     + + l+ fr+r P+v++  +e+++ e++  l eg lDl+++++ + ++ l ++++++epl+++++++hpLar+ +
      CTQ28020.1  89 HGETGELRIGFTSSAPfIKAVSDTLSMFRQRLPDVHILTRETNTREQIVPLSEGALDLGLLRNTQLPDTLAWERVLREPLLAMVPANHPLARQPS 183
                     5889********99888999************************999999********************************************* PP

                     ECGGGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEE CS
  LysR_substrate  96 vsledLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyr 188
                     vsl++La+ep+++++++ g  l d ++ +lr++g +p++a ev ++ ++++lvaaGlG+++lp+s+    ++  ++++lp++e ++ +e++lv+ 
      CTQ28020.1 184 VSLAALAREPFVFFDPHVGtgLYDDILGLLRRYGHTPKIAQEVGEAMTIIGLVAAGLGVSILPASFQ--RVQLSEMRWLPIDEQDAVSEMWLVWS 276
                     **************9999999*********************************************5..556777********9999******** PP

                     TTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidflrea 207
                     k++e+ +++++f+++l+++
      CTQ28020.1 277 KHHEQGALAKRFREALLSW 295
                     ***************9865 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   1.4   5.6e-26     5e-22       1      60 []       5      64 ..       5      64 .. 0.98
   2 ?   -1.9   0.0      0.38   3.4e+03      28      48 ..     107     128 ..     107     141 .. 0.72

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 5.6e-26
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr+lr+fvavaee +f rAA +L++sqp +s+qi+ LE++ g++Lf Rt+r+++LT+aG+
  CTQ28020.1  5 LRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQILEQQTGARLFARTNRSVSLTAAGK 64
                79********************************************************95 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.38
                 HHHHHHHHHHHHHHTS-.SEEE CS
       HTH_1  28 pavsrqikrLEeelgvp.LfeR 48 
                 +avs+ ++  +++l +  +++R
  CTQ28020.1 107 KAVSDTLSMFRQRLPDVhILTR 128
                 6899999999998865436666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2242.94
//
Query:       CTQ28021.1  [L=407]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-51  174.0   0.0    5.8e-51  173.7   0.0    1.1  1  ROK             ROK family
     0.0011   19.1   0.0     0.0025   18.0   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0018   18.1   0.0      0.006   16.5   0.0    1.9  1  MarR            MarR family
      0.007   16.2   0.1      0.017   15.0   0.1    1.7  1  MarR_2          MarR family
  ------ inclusion threshold ------
      0.077   13.5   0.0       0.22   12.1   0.0    1.8  1  HTH_27          Winged helix DNA-binding domain


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.7   0.0   1.6e-54   5.8e-51       1     289 [.      88     390 ..      88     394 .. 0.90

  Alignments for each domain:
  == domain 1  score: 173.7 bits;  conditional E-value: 1.6e-54
                 EEEEEE-SSEEEEEEEETTS-EEEEEEEEEHCCHHCCHHH...HHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCC.CCTTHHHHHHHH CS
         ROK   1 tigidiGgtkialalvdeegeilarekvetptetteetlv...daiaelvdeaerkadeliavgigspGlisdksgkivstpnitw.enfdlvekleer 95 
                 +++++i + +i l l+d +++ + + ++e   ++  + l+   d i+ +  + ++k++ l ++++ +pG+i+ ++g i+ +p  +  ++++l e+l+++
  CTQ28021.1  88 YLAVRISRGEIHLSLRDLSSQLVVEDQLELALTDSTPFLTrviDHIDRFFIRHQKKLERLTSIAMTMPGIIDTENGIIHRMPFYEDvKDVPLGEALANH 186
                 5789999999*************999995555555554441115556666677789999***********************96666************ PP

                 HTS-EEEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTC.... CS
         ROK  96 lnvpvevenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqq.... 190
                 ++vpv++++D+ a ++aE+ fgas ++++vi v +   vGaGvi +g+l++  +    e+GH+q+dp g++c+CGn+gClEt+as +++ + aq     
  CTQ28021.1 187 TGVPVYIQHDISAWTMAESLFGASRGARDVIQVVIDHNVGAGVITDGRLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVESVLELAQMrmaq 285
                 ************************************************9776666999*******************************9999999999 PP

                 ......CGTTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH.HHHHHHHHHCCTTTTCCCT-EEEE-S-STTH CS
         ROK 191 ......kgekleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll.eairklvkkylnkklevpvveivaaklgdka 282
                       +++ l+++ ++++a +gd  a +++  +++++++ +a ++nlf+pq+i +g     a ++l +ai +++ ++ + + ++   ++   ++++  
  CTQ28021.1 286 smssllHQRPLSVEWLCQAALQGDLLARDIISGVGNHVGRILAIMVNLFNPQKILIGSPFNLAAEILfPAISSCIRQQSLPAYSRHI-TVESTQFSNRG 383
                 **************************************************************999999*******999888777777.59999999999 PP

                 HHHHHHH CS
         ROK 283 gllGaaa 289
                  ++Gaa+
  CTQ28021.1 384 TMAGAAL 390
                 9999875 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     7e-07    0.0025      12      53 ..      21      62 ..      20      65 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7e-07
                    HHHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 12 tIYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyve 53
                    ++Y+l ++ ++v++ dl+++ + +p+s+++ ++++ ++ +v+
      CTQ28021.1 21 AVYRLIDQLGPVSRIDLSRFAQLAPASITKIVREMLEAHLVQ 62
                    79*********************************9998885 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.7e-06     0.006      10      48 ..      24      62 ..      20      68 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.7e-06
                HHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR 10 rilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                r++++ gp s ++L ++ ++ ++++t++++++ ++ l++
  CTQ28021.1 24 RLIDQLGPVSRIDLSRFAQLAPASITKIVREMLEAHLVQ 62
                689******************************998886 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   4.8e-06     0.017      22      54 ..      32      64 ..      16      74 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.8e-06
                EEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 22 ltvgelarrlglsksavsrilkrLvaaGLverr 54
                ++  +l r  +l ++++++i++++ +a Lv+++
  CTQ28021.1 32 VSRIDLSRFAQLAPASITKIVREMLEAHLVQET 64
                67779*************************776 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     6e-05      0.22      12      60 ..      26      73 ..      20      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6e-05
      HTH_27 12 irhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrek 60
                i  ++++++  dl+++ ++  ++i ++++++ e++Lv++t+  +++ + 
  CTQ28021.1 26 ID-QLGPVSRIDLSRFAQLAPASITKIVREMLEAHLVQETEIQEPGSRG 73
                55.777888889999999999*****************99988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3162.53
//
Query:       CTQ28022.1  [L=231]
Description: putative synthase (similar to dethiobiotin synthetase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-31  107.5   0.0    8.6e-31  107.3   0.0    1.0  1  AAA_26    AAA domain
    1.7e-12   47.5   0.0    2.3e-12   47.1   0.0    1.1  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
      0.001   18.4   0.1     0.0021   17.4   0.1    1.5  1  DUF1611   Domain of unknown function (DUF1611_C) P-loop domai


Domain annotation for each model (and alignments):
>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.0   1.4e-34   8.6e-31       2     195 ..       4     207 ..       3     210 .. 0.92

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 1.4e-34
      AAA_26   2 tifvtgtdtgvGKTvvslgLvralkrkgvkvgyfKPiqtgie......ededselikellgldqtyelpeplalsaplspelaarqegedidlekivke 94 
                 ++f+tgtdt+vGKTvvs +L++al ++g +v+ +KP+++g++      +++d+ +++++ +l  +ye+ +p+als+  s+ + +   +  + l++  ++
  CTQ28022.1   4 RFFITGTDTSVGKTVVSRALLQALAARGKSVAGYKPVAKGSKetpdglRNKDALVLQSVSTLALPYEAVNPIALSEDESSVAHSCPINYGL-LSDGLQR 101
                 78****************************************888887788************************9877766666555444.66666** PP

      AAA_26  95 lekdadivvVEGagglgvpiteellnadiaknlgapvilVargglgtinqllltiealrqknvrvlGvilNkvrnp......envetlekksgipvlGv 187
                 l+++ ++vvVEG+gg ++  ++ +   + + + ++pv++V+ +++g in++llt++a  + +++++G ++N+  np      e ++ l+kk + p++G+
  CTQ28022.1 102 LAAQVEHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANR-INPglahyaEIIDVLSKKLPAPLIGE 199
                 ************************************************************************.577688887799************** PP

      AAA_26 188 vPylpdle 195
                 +Pylp+ e
  CTQ28022.1 200 LPYLPRAE 207
                 ****9876 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   3.8e-16   2.3e-12       2     116 ..       6     204 ..       5     212 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 3.8e-16
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE.EEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   2 aiastkGGvGKTtlaanLaralarrglrVllvD.aDpqannlaileglendiep............................................. 54 
                 +i++t   vGKT+++ +L++ala rg+ V+ ++ +   ++ +   +gl+n+ +                                              
  CTQ28022.1   6 FITGTDTSVGKTVVSRALLQALAARGKSVAGYKpVAKGSKETP--DGLRNKDALvlqsvstlalpyeavnpialsedessvahscpinygllsdglqrl 102
                 79*******************************8888888887..****************************************************** PP

                 ........................................CCHCCCHHHHHHCHCHHHH.....EEEEEEEEESS...-TTCHHHHHHHHHHCTS-EEE CS
                 ........................................xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ........................................dlkrllellealgkkkall...lkiagvvlnrvdgeneetllkealeelkqrygvpvlg 110
                                                         +++  +++ +al + +a +   l ++g+v+nr+++    ++  e ++ l ++++ p++g
  CTQ28022.1 103 aaqvehvvvegtggwrslmndlrplsewvvqeqlpvlmvvGIQE-GCINHALLTAQAIAndgLPLIGWVANRINPG--LAHYAEIIDVLSKKLPAPLIG 198
                 ******************************************99.9*******9999999***************9..455555555555567****** PP

                 EEE--C CS
                 xxxxxx RF
        CbiA 111 viprde 116
                 ++p+  
  CTQ28022.1 199 ELPYLP 204
                 ***965 PP

>> DUF1611  Domain of unknown function (DUF1611_C) P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   3.4e-07    0.0021      13      44 ..       3      34 ..       1      50 [. 0.93

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.4e-07
     DUF1611 13 krvlvvGTdcavGKrttaleleealeerGlka 44
                kr ++ GTd +vGK + +++l +al +rG  +
  CTQ28022.1  3 KRFFITGTDTSVGKTVVSRALLQALAARGKSV 34
                7899*************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1870.59
//
Query:       CTQ28023.1  [L=431]
Description: putative voltage-gated chloride channel [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-72  243.4  39.0    3.9e-72  243.4  39.0    2.0  2  Voltage_CLC  Voltage gated chloride channel


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.8    0.0005         9     162     221 ..      15      84 ..       5      95 .. 0.79
   2 !  243.4  39.0   2.2e-76   3.9e-72       2     353 ..      72     415 ..      71     416 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0005
                  GGHHHHHHHHHHHHHHHHHHHHHHHHHHH.........HHHCHHCHHHHHHH.HHHHHHHHHHHHCCCSC CS
  Voltage_CLC 162 lelilfvllGilgGllgalfvrlllkver.........lfrkleklkikkrl.epalvgllvgllglllp 221
                    l+++ l+G+l++l+ alf   ++++e+         l++  + l+ + rl  pal+gl  g+l +l  
   CTQ28023.1  15 RRLLIATLIGLLAALAVALFRHAMVVLETlllsndsgsLVNAAQSLPAWRRLvTPALGGLTAGTLLWLWQ 84 
                  5678899999999999999999999999999999999855555466888777799999999999987754 PP

  == domain 2  score: 243.4 bits;  conditional E-value: 2.2e-76
                  HHHHHHHCCCCC-GGGS..C-SHHHHHHHCTTSS---HHHHHHHHHHHHHHHHCTT-S-BTHHHHHHHHHHHHHHHHHHTT.--SHHHHHHHHHHHHH CS
  Voltage_CLC   2 ggllagllvklvapeaa..gsGipevkaalngvkgplslrvllvkflasvltvgsGlslGreGplvqiGAavgsglsrllklsrndrdrrlvaaGaAA 97 
                  ggl ag l +l++++++   +  +++++al+  +g +++   lvk las+l+v++G  +GreG+++ ++A+++s+++r++  ++++  +  va+GaAA
   CTQ28023.1  72 GGLTAGTLLWLWQRRSVarPHAATDYMEALETGDGCFDTPASLVKSLASLLVVVTGSAIGREGAMILLAALAASLFARRFT-PQSE-WKLWVACGAAA 167
                  56666666666655544228***********************************************************99.7788.9********** PP

                  HHHHHHT-HHHHHHHHCTTTSTSS--TTHHHHHHHHHHHHHHHHHHCTTS.-S-.T---...--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Voltage_CLC  98 GiAAaFnaPlgGvlfalEevsrefslrallpvfvasvvaalvlrlllgee.pafgeveslfalsllelilfvllGilgGllgalfvrlllkverlfrk 194
                  G+A+a++aPl+G lf+ E++ +++ l++l+pv++++v+a l++++l+g   p ++ v+ +++ls l++ l+++ G+l+Gl+g lf++l+  ++r f k
   CTQ28023.1 168 GMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVIALLLTQFLNGGAaPLYH-VVLQQNLSALHYGLMLATGLLAGLCGPLFIWLMDYSHRGFVK 264
                  **********************************************999856677.877789**********************************99 PP

                  HHCHHHHHHHHHHHHHHHHHHHCCCSCC.CSSSSCCHHHHHCTT-S-HHHHHH...HHHHHHHHHHHHHCTT-CSBSHHHHHHHHHHHHHHHHHHHHH CS
  Voltage_CLC 195 leklkikkrlepalvgllvgllglllpasvlgggyeliasllegstlllsllllllllllkllataltlgsgvpgGifaPsLviGAalGrlvglvlal 292
                  l   k+ +++++al+gl+vg l+l++pa v+g+gy+ ++s l       s +ll+ ++++klla+++++gsg+pgG+f+P+L++G a+G+l++ +  l
   CTQ28023.1 265 L---KLAPPWQLALGGLIVGGLSLITPA-VWGNGYSVVQSYLLLP---PSGALLVGVFICKLLAVLASSGSGAPGGVFTPTLFVGLAMGMLFACFSRL 355
                  9...88899*******************.************9665...6788999******************************************* PP

                  H-CTSSC...HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC--GCCHHHHHHHHHHHHHHHC CS
  Voltage_CLC 293 llpgaassdpgafalvGmaaflagvtrapltaiviviEltgdlelllplmlavliAkavad 353
                  +lpg++     ++ l Gmaafla++t+ap++++++++E+tg+++ll+ l++++++++++++
   CTQ28023.1 356 WLPGSEEM-AIMMGLTGMAAFLAATTHAPIMSTLMICEMTGQYTLLPGLLITCVVSSVLSR 415
                  *9*76664.5899********************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2900.14
//
Query:       CTQ28024.1  [L=202]
Description: twin-argninine leader-binding protein for DmsA and TorA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-23   82.1   0.3    5.6e-23   81.5   0.3    1.4  1  Nitrate_red_del  Nitrate reductase delta subunit
  ------ inclusion threshold ------
       0.52    9.6   1.0       0.65    9.3   1.0    1.1  1  Pilt             Protein incorporated later into Tight Juncti


Domain annotation for each model (and alignments):
>> Nitrate_red_del  Nitrate reductase delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.3   6.3e-27   5.6e-23      21     136 ..      56     161 ..      26     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 6.3e-27
  Nitrate_red_del  21 a..ededllelaaeYtrLFlgpgrrsasPyesvYlsekkgllfgestlevrefyrqaglevaeefneppDHlaveLeflahLaereaeaeeaee 112
                      +  ++ +++ l + ++rLF+gp   +a+P++sv+l+++   lfg+stl++r+++r++g++ +++ nep+DH++++L + a L+e+e++      
       CTQ28024.1  56 SgfAASAEETLPEAWQRLFIGPWALPAPPWGSVWLDKES-VLFGDSTLALRQWMRENGIALEADGNEPEDHFGTVLLLAAWLCETEQD------ 142
                      2347889999**************************999.***********************************************9...... PP

  Nitrate_red_del 113 aealleaqkafleehllpWlpefa 136
                           +  +++l  hllpW ++f 
       CTQ28024.1 143 -----ALFAQLLAWHLLPWSGRFL 161
                      .....7999*************96 PP

>> Pilt  Protein incorporated later into Tight Junctions
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.0   7.2e-05      0.65     128     168 ..      38      76 ..       5      89 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 7.2e-05
        Pilt 128 seplssqssPfssPPqvpsvlassasseedllanWqrmfve 168
                 ++ + +q  Pf       s +a  as+ee l   Wqr+f+ 
  CTQ28024.1  38 QDGSWQQQWPFPVAAPLASGFA--ASAEETLPEAWQRLFIG 76 
                 3334456778876666667776..677************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1512.89
//
Query:       CTQ28025.1  [L=275]
Description: oxidoreductase, membrane subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-89  300.2  20.0    1.6e-89  300.1  20.0    1.0  1  DmsC      DMSO reductase anchor subunit (DmsC)
  ------ inclusion threshold ------
        4.2    7.6  11.1        1.7    8.8   0.3    3.6  4  DUF2613   Protein of unknown function (DUF2613)
        8.3    6.3  31.8       0.32   10.9   2.7    3.7  3  DUF4345   Domain of unknown function (DUF4345)


Domain annotation for each model (and alignments):
>> DmsC  DMSO reductase anchor subunit (DmsC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.1  20.0   2.7e-93   1.6e-89      10     276 .]       1     265 [.       1     265 [. 0.99

  Alignments for each domain:
  == domain 1  score: 300.1 bits;  conditional E-value: 2.7e-93
        DmsC  10 vfFtvlaqavvGafillalllllgknqalprevvlvgmfvlliLlgiGliasilHLGsplRAfnalnrvgsSwLSrEivagaiffalagliwLvavlkk 108
                 ++Ftvl+q+vvGa i+  l +l+ ++q ++r + ++ mf++++L+giG++as++HLGsplRAfn+ln++g+S+LS+Ei++ga+ffa++g++wL+avl+k
  CTQ28025.1   1 MLFTVLGQCVVGATIVSGLGWLALGDQREARRRLVRNMFFIWLLMGIGFLASVMHLGSPLRAFNSLNHIGASALSNEIASGALFFAVGGFWWLLAVLEK 99 
                 68************************************************************************************************* PP

        DmsC 109 lskaleklllivtailgiifvymmamvYasiktvptWhsgyTllaflltvlltGsvllyallqaakvatvavlalpllavlaltlaaivtvlqgaslrs 207
                 ++ +l+k++l ++++lg++fv  m++vY+ i+tvptW++gyT+ af+ltvll+G++ +++ll++akv  ++  +++ l+v al+++a+v+++q a l++
  CTQ28025.1 100 MPATLGKVWLAIAMLLGLLFVLAMTRVYQ-INTVPTWYNGYTTSAFFLTVLLSGPLFAALLLRLAKV-DFNGWFFAGLSVAALVISAAVIIMQSAGLST 196
                 *****************************.*************************************.79999************************** PP

        DmsC 208 iessvqeanalvpeyatlrvlrlvllfvllllllaalfalkvpnvallvlavllilagelieRtlfYgl 276
                 ++ssvq+a+ l+p+y++l++lrlvll++ l ++l++l++++ p ++ l++ +ll+l +e i+R lfYgl
  CTQ28025.1 197 LHSSVQQAATLLPDYGKLQALRLVLLALGLGCWLCPLIRRQPPRATGLLIGLLLVLIAECIGRGLFYGL 265
                 ********************************************************************7 PP

>> DUF2613  Protein of unknown function (DUF2613)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.97   5.8e+03      16      23 ..      11      18 ..       6      26 .. 0.59
   2 ?    4.2   0.0     0.008        48      15      36 ..     114     135 ..     110     146 .. 0.86
   3 ?    8.8   0.3   0.00029       1.7      11      54 ..     172     213 ..     171     213 .. 0.87
   4 ?   -0.7   0.6      0.26   1.6e+03      12      24 ..     242     254 ..     241     257 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.97
     DUF2613 16 lGvvavfg 23
                +G++ v g
  CTQ28025.1 11 VGATIVSG 18
                44444444 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.008
     DUF2613  15 vlGvvavfgvtavvqqdsrPst 36 
                 +lG+  v+ +t+v q +++P+ 
  CTQ28025.1 114 LLGLLFVLAMTRVYQINTVPTW 135
                 79******************85 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00029
     DUF2613  11 VaGivlGvvavfgvtavvqqdsrPstdravnadsalLgsveYGs 54 
                 +aG+ +++ ++  ++ ++q+  + + + +v+++ +lL  ++YG+
  CTQ28025.1 172 FAGLSVAALVISAAVIIMQSAGLSTLHSSVQQAATLL--PDYGK 213
                 589999999888888888888888888**********..****5 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.26
     DUF2613  12 aGivlGvvavfgv 24 
                  G+++G+ +v+++
  CTQ28025.1 242 TGLLIGLLLVLIA 254
                 69********975 PP

>> DUF4345  Domain of unknown function (DUF4345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.7   5.4e-05      0.32      50      97 ..      12      59 ..       8      66 .. 0.90
   2 ?    6.9  10.7   0.00094       5.6      16     108 ..      51     147 ..      49     160 .. 0.71
   3 ?    0.9   4.6     0.066   3.9e+02      10      82 ..     177     251 ..     167     261 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.4e-05
     DUF4345 50 glllglGllllwaipriekrraalrllalviflgglgRliSlaldglp 97
                g  ++ Gl +l++  + e rr+ +r ++++++l+g+g l S+++ g+p
  CTQ28025.1 12 GATIVSGLGWLALGDQREARRRLVRNMFFIWLLMGIGFLASVMHLGSP 59
                677889999**9999******************************977 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00094
     DUF4345  16 iGllgllagaaliagavgvelenatldselRflaglllglGllllwaipriekrra......alrllalviflgglgRliSlaldg.lpsaflivalvv 107
                  ++++l ++ + +++   ++   a++ s+  + ++l++++G +++++++  +++++      a+++l++++f+++  R++ + +   + +  +  a+++
  CTQ28025.1  51 ASVMHLGSPLRAFNS---LNHIGASALSNEIASGALFFAVGGFWWLLAVLEKMPATlgkvwlAIAMLLGLLFVLAMTRVYQINTVPtWYNGYTTSAFFL 146
                 577888888888888...466779***********************9987766542222227888888999999999988777665555554444444 PP

     DUF4345 108 E 108
                  
  CTQ28025.1 147 T 147
                 4 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.066
     DUF4345  10 alvliaiGllglla..gaaliagavgvelenatldselRflaglllglGllllwaipriekrraalrllalvifl 82 
                 +++l++ +++ +++  g ++++++v+  ++ +    +l +l  +ll+lGl  +++    +++ +a+ ll++++++
  CTQ28025.1 177 VAALVISAAVIIMQsaGLSTLHSSVQQAATLLPDYGKLQALRLVLLALGLGCWLCPLIRRQPPRATGLLIGLLLV 251
                 333333333333333355555554344444444457788888888888888777654444455555544444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 1962.03
//
Query:       CTQ28026.1  [L=811]
Description: oxidoreductase subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-90  304.8   0.0    1.2e-90  304.5   0.0    1.1  1  Molybdopterin    Molybdopterin oxidoreductase
    1.1e-28   99.5   0.0    2.7e-28   98.2   0.0    1.7  1  Molydop_binding  Molydopterin dinucleotide binding domain
    4.9e-14   52.1   1.0    9.2e-14   51.2   1.0    1.5  1  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.5   0.0   2.1e-94   1.2e-90       1     432 []     114     569 ..     114     569 .. 0.91

  Alignments for each domain:
  == domain 1  score: 304.5 bits;  conditional E-value: 2.1e-94
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEE.EEBT..SSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHH.... CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvag.fssg..plmsmeslaslkkllsllggknlsfydwyadlppasaq.... 89 
                    Rl+yPm+R+++rgeGkFvr+sW+eAl++ a++lk ++ +yg+++v++ +ssg  + + + s  s++  +++l+++ ++  ++y+ +++a+++    
     CTQ28026.1 114 RLNYPMKRVGKRGEGKFVRISWQEALDTLADRLKSVVAQYGNEAVYInYSSGivGGNITRSSPSAS-PVARLMNCYGGSLNQYGTYSTAQIAcamp 208
                    9**********************************************8544311444455555443.34555555666888899999988887778 PP

                    CHHCCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHH...HHHHHHHHHTTC-EEEEECSSB-H.CGGGCSEEEEEHTTTHHHHHHHHHHHHH CS
  Molybdopterin  90 qtigsdsrsnyessnpledlensdliilwGsNvreerpil...narirkaalkkkakvivigpryae.llkfadewlaikpgtdaalalamghvil 181
                    +t+gs   + +++s    d+ens+l++++G+N++e+r+     + ++ +a  +++a++ivi+pry++  + ++dew++i+pgtdaal+++++ v++
     CTQ28026.1 209 YTYGSN--DGNSTS----DIENSKLVVMFGNNPAETRMSGggiTWYLEQARERSNARMIVIDPRYTDtAAGREDEWIPIRPGTDAALVAGIAWVLI 298
                    888775..556666....**********************543333334444444************9889************************* PP

                    HCCCCTCHHHHHHEECHHHCCCCCCCEECCS...................HHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHH CS
  Molybdopterin 182 qelkvdkeflrkytygkeetdmpllvtleee...................tgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyra 258
                     e +vd++fl+ky++g++e++ p  +  +++                   ++ +++++ +++++lar++   ++ + i +G+g +++++g+ + ra
     CTQ28026.1 299 NEDLVDQPFLDKYCVGYDEKTLPAGAPANGHykayilgegddgiaktpqwASRITGIPTDRIIKLAREIGMSKP-AYICQGWGPQRQANGELTARA 393
                    **************************************************************************.********************* PP

                    HHHHHHHCTHCSSTTCEEEEESSCTTHHHCHHHHTCCTTCCCCCCCTT........HHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEES CS
  Molybdopterin 259 vinLallvgnvgqpgGgwahlnGqlilagaaekvgalpvllsvkslke........ekikfaaeqpgnlgnfprnlfversnllkssgkkvlyllg 346
                    +++L +l+gnvg +gG+ ++ ++ ++++ ++ +v ++pv++ ++ +++        e+++ ++  +g++++  +++f              ++++g
     CTQ28026.1 394 IAMLPILTGNVGINGGNSGARESTYTITIERLPVLENPVKTAISCFTWtdaiargpEMTASRDGVRGKEKLDVPIKFL-------------WNYAG 476
                    *****************************************************************************9.............89999 PP

                    H.HHHHSTTSCCCHCHHH...CSSEEEEEESCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEE....EEESSS-STT-BEHHHHHHHHHHH CS
  Molybdopterin 347 nnpevdhadenevekale...kldlvvvldgrltstalyaDiiLPaatwyEkedlytndegrfqh....lkqavsppgeaksdwkIlkaLakk 432
                    n  +++h+d+n++++ l+   k++++vv+d+++ts+a+yaD++LP+ + +E+ed+  nd   ++     +++a+s+++e k+ ++Il+++ak+
     CTQ28026.1 477 NTIINQHSDINKTHEILQdesKCETIVVIDNFMTSSAKYADLLLPDLMTVEQEDIIPNDYAGNMGylifIQPATSAKFERKPIYWILSEVAKR 569
                    99999*************99**************************************99999888888**********************96 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0   4.5e-32   2.7e-28       1     109 [.     690     803 ..     690     805 .. 0.96

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 4.5e-32
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC............ CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpepevveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwwe.......agekg 87 
                      l+L   +++ ++hs++ + +vl++a +++  v+inp dA+++Gik+Gd+V+v+++rG+v+++akvt+r++pGv +m +g+w+       ++++g
       CTQ28026.1 690 LQLFGFHYKARTHSSYGNVDVLQAACRQE--VWINPLDAEKRGIKNGDMVRVFNQRGEVRLPAKVTPRIMPGVSAMGQGAWHdanmtgdRIDHG 781
                      678899********************995..*************************************************************** PP

                      S-GHCTS--SCSTTT--CSTT- CS
  Molydop_binding  88 gnaNaltddatdplsgtpefks 109
                      ++ N+lt  + +pl+++++ ++
       CTQ28026.1 782 ACMNTLTTHRPSPLAKGNPQHT 803
                      *****************99886 PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   1.0   1.5e-17   9.2e-14       2      55 .]      53     111 ..      52     111 .. 0.95

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 1.5e-17
                     EEEEEE-S.SBTT--EEEEEEETTEEEEEEE-TTSTTTT....T---HHHHTCHHCCCB CS
  Molybdop_Fe4S4   2 kvvktaCp.yCgvgCglevhvkdgkivkvegdpdhpvne....grlCvKGrtllervyn 55 
                     + v+ aC+ +Cg++C l++hv+d+++v+ve+d+++++ +    +r+C++Gr++++r+++
      CTQ28026.1  53 HIVWGACSvNCGSRCALRLHVRDDEVVYVETDNTGDDRYgdhqVRACLRGRSIRRRINH 111
                     579**********************************9999999************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5910.71
//
Query:       CTQ28027.1  [L=89]
Description: hypothetical protein CH1034_220003 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-21   74.1   0.1    9.2e-21   73.8   0.1    1.1  1  DUF1161   Protein of unknown function (DUF1161)


Domain annotation for each model (and alignments):
>> DUF1161  Protein of unknown function (DUF1161)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.1   5.1e-25   9.2e-21       1      52 []      25      78 ..      25      78 .. 0.99

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 5.1e-25
     DUF1161  1 CeelkaeIeaKiqangV..tsytLeiVpndqaaqaagkVVGsCengtkkIvYkR 52
                Ce++k++I++Ki++ngV  t ++L iVpndqa+q + +VVG+C n+t kI Y+R
  CTQ28027.1 25 CERVKSDIQQKIINNGVpeTAFSLAIVPNDQADQPGVQVVGHCANDTFKITYTR 78
                ****************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 727.94
//
Query:       CTQ28028.1  [L=236]
Description: hypothetical protein CH1034_220004 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-119  397.6   0.2   2.3e-119  397.5   0.2    1.0  1  UPF0257   Uncharacterised protein family (UPF0257)


Domain annotation for each model (and alignments):
>> UPF0257  Uncharacterised protein family (UPF0257)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.5   0.2  1.3e-123  2.3e-119       5     236 .]       5     236 .]       1     236 [] 0.98

  Alignments for each domain:
  == domain 1  score: 397.5 bits;  conditional E-value: 1.3e-123
     UPF0257   5 vlllllallLagCdkkealesftPelasfsnefdfdpLrGpvkdftqtllddkgevtkkvegtlsqeGCfdtLeledlenntdlaLvldanyyvdaetr 103
                   l+ +allL++Cd+k+a ++ftPe+asfsnef+fdpLrGpvkdf+qtlld+++ v+kkv+++ls+eGCfd L+led+en+t+++L+ldanyyvd++t+
  CTQ28028.1   5 YWLIPAALLLTACDRKSAPDAFTPEMASFSNEFEFDPLRGPVKDFSQTLLDEHDVVVKKVSAQLSREGCFDLLTLEDVENKTGATLLLDANYYVDGRTH 103
                 5567789******************************************************************************************** PP

     UPF0257 104 ekrvrLqgkCqLaelpsagvsyetddkgfvvkaekkevkaeyryddeGyPlgkttvskektlsveakpsadarkkldytavstlndrqvgtvkqsCeyd 202
                 ekr+ LqgkCqLae+p+agvs+etdd+gf+++a++ke++a+yryd++GyPlgktt++ke++++v+++ps+d+rkkldyta+st+ndr++gtv+q+C+yd
  CTQ28028.1 104 EKRLCLQGKCQLAEMPAAGVSWETDDNGFIISARGKETTATYRYDSDGYPLGKTTTAKEERFTVASTPSKDPRKKLDYTAISTFNDRTLGTVRQTCDYD 202
                 *************************************************************************************************** PP

     UPF0257 203 qhanPvsCqllivdesvkpavvrkytiknkidyy 236
                 +++nP+sC+l+++desv+p+++r+ytikn+idyy
  CTQ28028.1 203 DYDNPLSCELQVIDESVQPPLTRHYTIKNRIDYY 236
                 *********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1733.49
//
Query:       CTQ28029.1  [L=186]
Description: spermidine N1-acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-21   76.0   0.0    5.4e-21   75.7   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    5.9e-14   52.3   0.2    8.7e-14   51.8   0.2    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
      3e-08   34.0   0.1      6e-08   33.0   0.1    1.5  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    2.7e-07   30.4   0.0    8.3e-07   28.8   0.0    1.7  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
      4e-06   26.8   0.1    5.7e-06   26.3   0.1    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.3e-05   25.0   0.0    2.6e-05   24.1   0.0    1.5  1  FR47             FR47-like protein
    0.00069   19.8   0.3    0.00087   19.5   0.3    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.017   14.7   0.0      0.044   13.3   0.0    1.6  1  GNAT_acetyltran  GNAT acetyltransferase
      0.071   12.6   0.1       0.24   10.9   0.1    1.6  1  Acetyltransf_15  Putative acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0   2.7e-24   5.4e-21       2     137 ..       7     140 ..       6     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 2.7e-24
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmry.lpepltleea.eewlerawaeeseeegygwaivlkdtgviGsvglrdleeedeeaelgymlapsfwgk 94 
                     + Lrpl+ eDl  +++l ++  vmry + ep++   +  ++++++ ++   +++  ++i+ +++   G v l ++++ +++ae+ +++ p+f+gk
      CTQ28029.1   7 VKLRPLEREDLRFVHQLDNNASVMRYwFEEPYEAFVElSDLYDKHIHD---QSERRFVIECNGD-KAGLVELVEINHVHRRAEFQIIISPDFQGK 97 
                     679*********99***********86666665444414444444443...355679**66777.8***************************** PP

  Acetyltransf_3  95 GyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     G+at a+r +++y f+ l+l +l+  +dkeNe+ i +++klGf
      CTQ28029.1  98 GLATRAARLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGF 140
                     ******************************************9 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.2   4.3e-17   8.7e-14       9     117 .]      35     140 ..      17     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 4.3e-17
                     HHHTHHHHHHHHHHH.......HHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TES CS
  Acetyltransf_1   9 vesffppnedaseee.......feesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gik 95 
                     +e++         e+       + +  +++ e+ +v+e +g  +G + l  i++   ++ +  ++ +sp+++gkGl+++  + ++++ +   +++
      CTQ28029.1  35 EEPY---------EAfvelsdlYDKHIHDQSERRFVIECNGDKAGLVELVEINH--VHRRAEFQIIISPDFQGKGLATRAARLAMDYGFTVlNLY 118
                     2222.........2221223334455677888**********************..7889999******************************** PP

                     EEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  96 kivlaveedndaairlYeklGF 117
                     k++l v++ n++ai+ Y+klGF
      CTQ28029.1 119 KLYLIVDKENEKAIHIYRKLGF 140
                     *****************99**9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1     3e-11     6e-08       4      75 ..      58     141 ..      54     142 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 3e-11
                     EEEEEEETTEEEEEEEEEEES..TCTEE.....EEE-GGGTTSSHHHHHHHHTT.SEEE..EE.EEEE....THHHHHHHHHHTTEE CS
  Acetyltransf_7   4 evfVaeddgkivGfialslld..aeitr.....laVdpeyrgkGiGraLleaae.kgii..le.qlel....naekaikfYeklGFe 75 
                     + fV+e +g   G + l++++  +   r     + ++p+++gkG++++  ++a   g++     +l+l    ++ekai+ Y+klGF 
      CTQ28029.1  58 RRFVIECNGDKAGLVELVEINhvH---RraefqIIISPDFQGKGLATRAARLAMdYGFTvlNLyKLYLivdkENEKAIHIYRKLGFM 141
                     55899***9999*99999998541...235677****************99633445333222344556543334***********5 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   4.2e-10   8.3e-07       4     142 ..      15     145 ..      13     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 4.2e-10
                     GGHHHHHHHCTSCCCHHHH----.-H.HHHHHHHH.HHC.STTEEEEEEEETTEEEEEEEEEEGGGCGGGGCS---TT-EEEEEEESSHHHCTTT CS
  Acetyltransf_8   4 aDlellhrWmnrprvaewweeag.tl.eevrella.kldadphsepliglldgepvgyfeiYwakedelaeyydaepgdrGiHlligeaeargkg 95 
                     +Dl  +h+  n+  v+++w e+  ++  e+ +l++ ++ +d++ + ++++ +g  +g++e+ ++++               + ++i  +++ gkg
      CTQ28029.1  15 EDLRFVHQLDNNASVMRYWFEEPyEAfVELSDLYDkHI-HDQSERRFVIECNGDKAGLVELVEINHV---------HRRAEFQIII-SPDFQGKG 98 
                     79999999999999999995554244577788888355.6***************************.........2333455666.5899**** PP

                     CHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEE CS
  Acetyltransf_8  96 lttallralvhylfadprtrrvvvEPdvrNerairllekaGfekeke 142
                     l+t+  r  ++y f+     +  +  d +Ne+ai++++k+Gf  e+e
      CTQ28029.1  99 LATRAARLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFMVEGE 145
                     ******************************************99987 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   2.8e-09   5.7e-06      16     112 ..      41     146 ..      22     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.8e-09
  Acetyltransf_10  16 fisp.ealrerieegealllvaeeggkivGvielrdgshisll.....fVdpeyrgqGigkaLleaveee.aekdgikl.eltvnasp.yavpf 100
                      f++  + ++++i++++   +v e++g  +G +el + +h+++      +++p+++g+G++++    + ++ +   ++ +  l v++ + +a+ +
       CTQ28029.1  41 FVELsDLYDKHIHDQSERRFVIECNGDKAGLVELVEINHVHRRaefqiIISPDFQGKGLATRAARLAMDYgFTVLNLYKlYLIVDKENeKAIHI 134
                      3333366777889*********************999999985555559************9999999987555555556********9***** PP

  Acetyltransf_10 101 YeklGFkavgee 112
                      Y+klGF + ge 
       CTQ28029.1 135 YRKLGFMVEGEL 146
                      ******998876 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.3e-08   2.6e-05      26      79 ..      87     142 ..      69     148 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.3e-08
                 EEEE-GGG-SSSHHHHHHH.HHHHHHHH.S-S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  26 alqvlpehrrrGlgsrlvk.alakeiae.rgktvllvvvasNtpsirlyeklGfek 79 
                  + + p+++++Gl++r ++ a+ ++    + +++ l+v  +N+++i++y klGf +
  CTQ28029.1  87 QIIISPDFQGKGLATRAARlAMDYGFTVlNLYKLYLIVDKENEKAIHIYRKLGFMV 142
                 57789***********99769999*9998899**********************75 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.3   4.3e-07   0.00087       3     152 ..      11     158 ..       9     160 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.3e-07
  Acetyltransf_4   3 aateeDakeilaiyaey.vvntaitfeyev..ssveefekflealdsekeyvflvaesdrivGyaylgqfkkrakdwkaelsvylaerdnnkegl 94 
                      +++eD+    ++ ++  v+++ +++ ye   +  + ++k +++   + e+ f ++ +++ +G   l++++       ae ++ +   d + +gl
      CTQ28029.1  11 PLEREDLRFVHQLDNNAsVMRYWFEEPYEAfvELSDLYDKHIHD---QSERRFVIECNGDKAGLVELVEINH--VHRRAEFQIIIS-PDFQGKGL 99 
                     56667777777776555245555554332221444455566666...4667777777***************..8999*******7.89****** PP

  Acetyltransf_4  95 grelidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiD 152
                     +     + +++     n+ +l+  + ++ne++i ++ +lGF ++g++   + +ng++ +
      CTQ28029.1 100 ATRAARLAMDYGfTVLNLYKLYLIVDKENEKAIHIYRKLGFMVEGELIHEFFINGEYRN 158
                     *********9988**********************************999999999865 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.2e-05     0.044     178     239 ..      80     145 ..      74     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.2e-05
  GNAT_acetyltran 178 yekgieieidTkedyrrkgLAtivaaalileclk....rglyPsWDaaneaSvaLaekLGYefeke 239
                      +++ +e +i   +d+++kgLAt +a    +  +      +ly   D +ne+++++++kLG+  e e
       CTQ28029.1  80 VHRRAEFQIIISPDFQGKGLATRAARLAMDYGFTvlnlYKLYLIVDKENEKAIHIYRKLGFMVEGE 145
                      5778999***************99988777655422124777888999*************98765 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00012      0.24      77     137 ..      87     141 ..      85     153 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
  Acetyltransf_15  77 tlyvsekyrgkGlakklLeeslk...elkknYkvdnelllaLHlnpkDksMnisfalYyslgFr 137
                      ++++s++++gkGla +    +++   ++++ Yk+         l   Dk+ +++  +Y++lgF 
       CTQ28029.1  87 QIIISPDFQGKGLATRAARLAMDygfTVLNLYKLY--------LI-VDKENEKAIHIYRKLGFM 141
                      799**********9875444432111444555443........32.599999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1443.86
//
Query:       CTQ28030.1  [L=113]
Description: hypothetical protein CH1034_220006 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-42  141.4   6.0    9.7e-42  141.1   6.0    1.1  1  DUF1283   Protein of unknown function (DUF1283)
     0.0097   16.4   0.4      0.012   16.1   0.4    1.1  1  RXLR      RXLR phytopathogen effector protein, Avirulence act
  ------ inclusion threshold ------
      0.093   12.4   1.1       0.15   11.8   1.1    1.3  1  TSP_3     Thrombospondin type 3 repeat


Domain annotation for each model (and alignments):
>> DUF1283  Protein of unknown function (DUF1283)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   6.0   1.6e-45   9.7e-42       2      83 .]      32     113 .]      31     113 .] 0.99

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 1.6e-45
     DUF1283   2 klvienGdsalskeaarqskeqWnetrsLRnkvnkrvekefdkadkaidkrdkCeksanvnaYWepntkrCLDrrtGrpvkP 83 
                 +lvie+Gdsa+s+++a+++keqWn+trsLR+kvnkr+eke+dkad a+d++d+C+ksanvnaYWepnt rCLDrrtGr+++P
  CTQ28030.1  32 RLVIESGDSAQSRQQASMEKEQWNDTRSLRQKVNKRAEKEWDKADVAFDAQDNCQKSANVNAYWEPNTLRCLDRRTGRAINP 113
                 79******************************************************************************98 PP

>> RXLR  RXLR phytopathogen effector protein, Avirulence activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.4     2e-06     0.012       7      72 ..      14      75 ..      10      95 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2e-06
        RXLR  7 llvvvatlllasgsasaastkkdqktvavvskssgeaesrdaadkRfLRshkaeeddeeseeraag 72
                +l+++a+++++s+ a++++   ++  +a +++++ ++e+++ +d+R+LR++    +++ ++e  + 
  CTQ28030.1 14 ILALSAVVYTSSSYAATDRLVIESGDSAQSRQQA-SMEKEQWNDTRSLRQKV---NKRAEKEWDKA 75
                6788999999999999999888777777777766.6999**********754...44444444443 PP

>> TSP_3  Thrombospondin type 3 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.1   2.4e-05      0.15      20      35 ..      77      92 ..      73      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.4e-05
       TSP_3 20 gvqddlDNCprnanid 35
                   d +DNC+ +an++
  CTQ28030.1 77 VAFDAQDNCQKSANVN 92
                55699*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1324  (0.0738468); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 888.95
//
Query:       CTQ28031.1  [L=67]
Description: hypothetical protein CH1034_220007 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       151  (0.00842211); expected 358.6 (0.02)
Passed bias filter:                      114  (0.00635841); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 527.43
//
Query:       CTQ28032.1  [L=108]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-45  151.6  10.5      8e-45  151.5  10.5    1.0  1  UPF0060   Uncharacterised BCR, YnfA/UPF0060 family


Domain annotation for each model (and alignments):
>> UPF0060  Uncharacterised BCR, YnfA/UPF0060 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.5  10.5   4.5e-49     8e-45       1     106 [.       1     107 [.       1     108 [] 0.98

  Alignments for each domain:
  == domain 1  score: 151.5 bits;  conditional E-value: 4.5e-49
     UPF0060   1 vlksillfllaalaeigGaylvwlwlreaksvllalvaaillavygflatlqpaafGrvyaayGGvfvvlallwglvvdgvkldlydwiGalialvGvl 99 
                 +lk++llf+++al+ei+G+yl+wlwl+++++ ll++++a++la++++l+tl+paa+GrvyaayGGv+v++allw++vvdgvkl+ ydw Ga++al+G+l
  CTQ28032.1   1 MLKTTLLFFATALCEIVGCYLPWLWLKRGATPLLLIPTALALALFVWLLTLHPAASGRVYAAYGGVYVCTALLWLRVVDGVKLTHYDWAGAAVALCGML 99 
                 89************************************************************************************************* PP

     UPF0060 100 vilyap.r 106
                 +i++++ r
  CTQ28032.1 100 IIVAGWgR 107
                 ****9955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 825.38
//
Query:       CTQ28033.1  [L=427]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-56  191.3  57.3    6.2e-54  183.2  35.4    2.0  2  MFS_1     Major Facilitator Superfamily
    0.00023   19.6   8.0      0.017   13.5   0.0    3.4  3  OATP      Organic Anion Transporter Polypeptide (OATP) family
     0.0029   17.9   1.6     0.0029   17.9   1.6    2.2  2  DUF4381   Domain of unknown function (DUF4381)
  ------ inclusion threshold ------
       0.45   10.7   5.8         14    6.0   0.1    3.8  3  DUF2905   Protein of unknown function (DUF2905)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.2  35.4   1.4e-57   6.2e-54       1     353 []      28     387 ..      28     387 .. 0.88
   2 !   21.9  13.9   1.6e-08   7.1e-05      61     173 ..     310     421 ..     305     426 .. 0.82

  Alignments for each domain:
  == domain 1  score: 183.2 bits;  conditional E-value: 1.4e-57
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l++a+++++l+rs l++a   a+  dlg+s++e+g ll++++l +++a+lp G l dr+G+r vl +gl++++++ +l  +++s+  +++lr+  G+g+
  CTQ28033.1  28 LFIAGIVNFLDRSSLSVAGE-AIRADLGLSATEFGVLLSAFSLSYGFAQLPSGILLDRLGPRIVLGAGLIFWSAMQALTGMVNSFSHFILLRIGLGIGE 125
                 79*****************9.******************************************************55555645555************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll.......peepperkrkspkeee... 188
                 + ++pag+  i dw++++erg a+g++++++ lG +++p++  ++  ++gWr +f++++++++++++++++ +       +        +++++ +   
  CTQ28033.1 126 APFMPAGVKSINDWYAQRERGTAVGIFNSSTVLGQAIAPPALVIMQLAWGWRTMFVVIGLAGIVVGLCWYVGYrnrrqftL-------QEEEQQYLase 217
                 *****************************************99999*********************96666644444432.......33333333544 PP

       MFS_1 189 .kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr......rrrllla 280
                  + +   +++  w al+k++  w +++++ ++    +++ ++lp ylq + gls l  +g++ a+++l++a+++ + g ++d l r      ++r + +
  CTQ28033.1 218 eAARPALKFS-EWLALFKRRTTWGMILGFSGVNYTGWLYIAWLPGYLQAQQGLS-LARTGWVAAIPFLAAAVGMWVNGLVVDALARrgydqaKTRKTAI 314
                 3334455555.5********999888888888888888****************.******************77777777776666667779999999 PP

       MFS_1 281 llllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 +++l+l+alg +l+  + s+++ +++++ + + ++ f+ +s++ l++ ++ +++ ++++++ n+ + + ++++p
  CTQ28033.1 315 VIGLVLSALGTLLVVQS-STPAQAVAFISMALfCVHFAGTSAWGLVQVMVAEHKVASVAAIQNFGSFVFASFAP 387
                 99999999999999999.778888888888887********************************999999887 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 1.6e-08
       MFS_1  61 rrrvlllglllfalglllllfasslwlllvlrvlqGlga.galfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyil 157
                 r+  +++gl+l+alg +ll++ ss ++ +v+ + ++l++  ++ +++  l+  ++++ + +++ ++ + g+ + a ++p++ g+++ +  ++ ++ +i+
  CTQ28033.1 310 RKTAIVIGLVLSALG-TLLVVQSSTPAQAVAFISMALFCvHFAGTSAWGLVQVMVAEHKVASVAAIQNFGSFVFASFAPIVTGWVVdTTHSFNLALVIA 407
                 4559***********.777744666666666666666654777888888899999999****************************99999******** PP

       MFS_1 158 aivsllafvlfllllp 173
                 a+v++ ++++   ++ 
  CTQ28033.1 408 AGVTFAGALC--YFFI 421
                 ********97..3332 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.7e-06     0.017     134     183 ..     113     162 ..      98     164 .. 0.89
   2 !    5.8   0.0   0.00079       3.5     313     380 ..     255     321 ..     199     337 .. 0.71
   3 !    2.5   1.7    0.0077        34     461     524 ..     338     397 ..     328     399 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.7e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 134 lfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpal 183
                  f+l  + lGiG++p+++ G+  i D   +++  + +gi+ + ++lG a+
  CTQ28033.1 113 HFILLRIGLGIGEAPFMPAGVKSINDWYAQRERGTAVGIFNSSTVLGQAI 162
                 577778899**************************************997 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.00079
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 313 fitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvsllsllll 380
                 +i++lp yl+ q +ls ++   + +++  ++aa+G+ + Gl+v  l  +    ak    + ++ l+l+
  CTQ28033.1 255 YIAWLPGYLQAQQGLSLARTGWV-AAIPFLAAAVGMWVNGLVVDALARRGYDQAKTRKTAIVIGLVLS 321
                 899*************9998877.677788999**********9887766555544433333333333 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.0077
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 461 llflillflvsflgalgrvpallvilRcVkkedksfalGlqlllirllgliPgPiifGaiiDst 524
                 ++f+ + ++++ ++ +++ + ++v+   V++++ +   ++q +   +++   +Pi+ G+++D+t
  CTQ28033.1 338 VAFISMALFCVHFAGTSAWGLVQVM---VAEHKVASVAAIQNFGSFVFAS-FAPIVTGWVVDTT 397
                 5566666666666666666666666...5554444444566666667766.79*********97 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.6   6.4e-07    0.0029       7      78 ..     162     235 ..     157     268 .. 0.77
   2 ?   -0.7   0.2      0.35   1.6e+03      12      37 ..     280     300 ..     269     342 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6.4e-07
     DUF4381   7 hlPepvswwPpapGwwlllaalllllllvlalwllrrrkrn....rreAlreLaalradeadakellaalselLkr 78 
                 ++P++  ++ +a+Gw ++ +++ l++++v + w++  r+r+    ++e ++ La+ +  +a+++  +++  +l kr
  CTQ28033.1 162 IAPPALVIMQLAWGWRTMFVVIGLAGIVVGLCWYVGYRNRRqftlQEEEQQYLASEE--AARPALKFSEWLALFKR 235
                 6788888***********977777888888888877555544567777777777777..88888888888888888 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.35
     DUF4381  12 vswwPpapGwwlllaalllllllvla 37 
                 +++   a+G+w+       l++ +la
  CTQ28033.1 280 IPFLAAAVGMWVNG-----LVVDALA 300
                 45555556666555.....2222222 PP

>> DUF2905  Protein of unknown function (DUF2905)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.35   1.6e+03      13      38 ..      59      85 ..      53     106 .. 0.71
   2 ?    6.0   0.1     0.003        14       3      21 ..     179     197 ..     177     204 .. 0.89
   3 ?    5.1   0.1    0.0059        26       2      21 ..     311     330 ..     310     342 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.35
     DUF2905 13 vlgllllllakl.glGrLPGDiriere 38
                 +g+ll  ++ + g+ +LP  i + r 
  CTQ28033.1 59 EFGVLLSAFSLSyGFAQLPSGILLDRL 85
                567777776444568888877776665 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.003
     DUF2905   3 lLivlglvlvvlgllllll 21 
                 +++v+gl+ +v+gl++++ 
  CTQ28033.1 179 MFVVIGLAGIVVGLCWYVG 197
                 799*************986 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0059
     DUF2905   2 klLivlglvlvvlgllllll 21 
                 k+ iv+glvl +lg ll++ 
  CTQ28033.1 311 KTAIVIGLVLSALGTLLVVQ 330
                 7889***********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 3285.38
//
Query:       CTQ28034.1  [L=487]
Description: putative mannonate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-94  316.0   0.0    2.1e-94  315.6   0.0    1.2  1  Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
    5.4e-50  169.5   0.0    8.5e-50  168.8   0.0    1.3  1  Mannitol_dh    Mannitol dehydrogenase Rossmann domain


Domain annotation for each model (and alignments):
>> Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.6   0.0   2.4e-98   2.1e-94       1     244 [.     213     458 ..     213     460 .. 0.98

  Alignments for each domain:
  == domain 1  score: 315.6 bits;  conditional E-value: 2.4e-98
  Mannitol_dh_C   1 esvgfpntmVDRIvpaatddelakleeelgveDplavtvEpFiqWviednfvkgrpelelvgvelvedvepyeerKlriLNggHaalaylgalaGy 96 
                    ++v+fp+tmVDRIvpa+t+++l k+ + +gv+Dp+ v++EpF+qWviednfv+grp++e++g+elv+dv p+ee+Klr+LNg+H++laylg+laGy
     CTQ28034.1 213 QNVTFPSTMVDRIVPAVTAETLDKITQLTGVRDPAGVACEPFRQWVIEDNFVAGRPQWEKAGAELVADVVPFEEMKLRMLNGSHSFLAYLGYLAGY 308
                    69********************************************************************************************** PP

  Mannitol_dh_C  97 qtiheamkdeeiraivkkllteevapllkkvdeqdleeYadkiieRFsNpyikdtvervaldGsqklpkrilpslrrlikagtlpellalgvalwi 192
                    q+i+++m+d+++r ++ +l+ +e+ap+lk  +++dl  Ya+++i R+ Np++k++++++a+dGsqklp+r+l+s+r+++ ++  + llalgva+w+
     CTQ28034.1 309 QHINDCMQDDNYRRAALSLMLDEQAPTLKV-QGVDLSRYASLLIDRYCNPALKHRTWQIAMDGSQKLPQRMLDSIRWHLVHQRDFTLLALGVAGWM 403
                    *****************************9.***************************************************************** PP

  Mannitol_dh_C 193 rylegvaeggnyiekeDpqleelqe...aallakervkavlaekeileedlaqnk 244
                    ry+ gv+++g++ie+ Dp l+ +q+   a++ ++ rvka+l +++i++ +l+q +
     CTQ28034.1 404 RYVGGVDDAGQAIEICDPLLPVIQQavaASADGEARVKALLGIEAIFGVELPQES 458
                    *************************8877888999************99998876 PP

>> Mannitol_dh  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   0.0   9.5e-54   8.5e-50       2     151 .]      23     185 ..      22     185 .. 0.98

  Alignments for each domain:
  == domain 1  score: 168.8 bits;  conditional E-value: 9.5e-54
                  EEEEES-SHHHHHTHH.HHHHHHTT--TT-EEEEEE-STTHH.HHHHHTTTT-EEEEE-SSS---EEEE--EEEEEEGGG-.HHHHHHHHTSTT--EE CS
  Mannitol_dh   2 rivhfGaGnfhRahqa.yiddLlaeegldwgivevnlrevda.reaLkaqdelyvviekgeeskearlvgsvnavlsveed.lealieamaePeiriv 96 
                  rivh+G+G+fhRahqa y d L +e+g+dwg+ evnl+ +++ +++L++qd ly+v+e++++ ++ar+vg v+++l++  d lea+++am++P+++iv
   CTQ28034.1  23 RIVHLGFGAFHRAHQAvYADILASEHGSDWGYTEVNLIGGEQqIADLQQQDLLYTVAEMSADAWTARVVGVVKKALHAGVDgLEAVLAAMCQPQVAIV 120
                  8***************999999999*****************9************************************999**************** PP

                  EE---TTT..BE.TTTEB-TTSHHHHHHHH-TT.......HHHHHHHHHHHTT----EEEE-SS- CS
  Mannitol_dh  97 sltvtekG..id.atgeletdlpaiaadlakpe.......llvealkrrraaglkpltiisCdnv 151
                  slt+tekG  ++ a+gel+ d+p iaadl++p+       ++veal+rrraagl+++t++sCdn+
   CTQ28034.1 121 SLTITEKGycHSpASGELQLDHPLIAADLHNPHqpksaagVVVEALSRRRAAGLPAFTVMSCDNM 185
                  **********9*****************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 4086.74
//
Query:       CTQ28035.1  [L=143]
Description: universal stress protein UP12 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-26   91.8   0.0    6.3e-26   91.6   0.0    1.0  1  Usp       Universal stress protein family
  ------ inclusion threshold ------
      0.075   13.2   0.0       0.11   12.7   0.0    1.2  1  TetR_C_9  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.0     7e-30   6.3e-26       1     141 []       1     143 []       1     143 [] 0.96

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 7e-30
                 S-SEEEEEE-..SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH.HHHHHHCTTCEEEEEEEESSHHHHHH CS
         Usp   1 mykrIlVavD..gseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada.akaaaeaggvkvevvveegdpaeeil 96 
                 myk+Il++vD  + + s+kA+++A  la a ++e++ll+v++ ++ +       + ++ e+  +e+ +++    +++ ++     ++ v++g++++eil
  CTQ28035.1   1 MYKKILLPVDvfEMDLSDKAVRHAEFLASAENGEITLLNVLPNSSRSLLRGFTADIRKFEAYMKEESEKKMReVARLFAIPMTRIHTRVVFGNVRDEIL 99 
                 9*******************************************************999999999988877778889999999999************* PP

                 HHHHHTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp  97 evaeeedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                  + ++e+ d iV+Gsr+  g+s  llGS++e++lr a+ pVlvVr
  CTQ28035.1 100 AISNNEEFDVIVIGSRK-PGISTHLLGSNAESILRYAKTPVLVVR 143
                 *****************.**************************8 PP

>> TetR_C_9  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.2e-05      0.11      28      84 ..      58     114 ..      52     126 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHS-HHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSB-S--HHHHHHHHHHH CS
    TetR_C_9  28 llaalvrdadeeeakdiadfyllplaraaqrlieeGvkaGvirpldpqlfyiavlGa 84 
                  + a +++ +e++ +++a  ++ p++r   r++   v++ ++   + + f + v+G+
  CTQ28035.1  58 KFEAYMKEESEKKMREVARLFAIPMTRIHTRVVFGNVRDEILAISNNEEFDVIVIGS 114
                 567899**************************9999999888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 1322.89
//
Query:       CTQ28036.1  [L=228]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-23   82.0   8.3    6.9e-23   81.4   8.3    1.2  1  FCD             FCD domain
    2.9e-17   62.0   0.1    1.2e-16   60.1   0.0    2.1  2  GntR            Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
      0.098   12.9   0.0       0.24   11.6   0.0    1.7  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   8.3   1.2e-26   6.9e-23       5     124 ..      89     208 ..      87     209 .. 0.99

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 1.2e-26
         FCD   5 lRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlalssperleeslaeHrai 103
                 +R+++E++++r+aa  +++++l +le+ l+++++a+++++l++f+ +d +FH+ l  +a+ ++ +e++e++ a + r+r+++l +    e  l++H++i
  CTQ28036.1  89 VRQAIECAVVRRAAGMINEEQLYQLEQNLHQQRIAVDRQQLNDFFLLDDEFHQKLSIIADCQLAWETVENIKAAIDRVRYMSLDHVTSPEMLLRQHHEI 187
                 7************************************************************************************************** PP

         FCD 104 ldAirardadaAraamrrHle 124
                 + A++ rda+a+++am+ Hl+
  CTQ28036.1 188 FTALEKRDAEAVEKAMSIHLH 208
                 *******************97 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0     2e-20   1.2e-16       3      64 .]      15      75 ..      13      75 .. 0.98
   2 ?   -1.9   0.0      0.45   2.7e+03      40      57 ..      97     114 ..      92     123 .. 0.71

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 2e-20
                HHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  3 eqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                +q+y+ Lr+dI+   + pG++L se+e++ +f+Vsr++vReA ++L++ gl+++r++rG +V
  CTQ28036.1 15 QQIYRILRRDIVHCLIPPGTPL-SEKEVSVRFAVSRQPVREAFIKLAENGLIQIRPQRGSYV 75
                89********************.*************************************98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHTTSEEEE CS
        GntR  40 tvReALrrLeaeglverr 57 
                 +vR+A  +  +e+l + +
  CTQ28036.1  97 VVRRAAGMINEEQLYQLE 114
                 677777777777765554 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.1e-05      0.24      23      59 ..      36      72 ..      32      73 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.1e-05
                    B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTE CS
  Fe_dep_repress 23 vktkdlaerLnvspssVsemlkkLekdGyveyekykg 59
                     + k+++ r +vs   V e   kL+++G+++  +++g
      CTQ28036.1 36 LSEKEVSVRFAVSRQPVREAFIKLAENGLIQIRPQRG 72
                    57899*****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1970.18
//
Query:       CTQ28037.1  [L=249]
Description: L-allo-threonine dehydrogenase, NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-53  180.4   0.0    3.2e-53  180.1   0.0    1.1  1  adh_short        short chain dehydrogenase
    2.9e-37  128.5   0.0    3.5e-37  128.2   0.0    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.6e-11   44.4   0.0    2.3e-11   43.9   0.0    1.1  1  KR               KR domain
    1.6e-06   27.7   0.2    7.6e-06   25.6   0.1    2.2  2  Epimerase        NAD dependent epimerase/dehydratase family
    8.2e-05   22.6   0.1    9.7e-05   22.3   0.1    1.3  1  NAD_binding_10   NAD(P)H-binding
    0.00023   20.4   0.0    0.00051   19.3   0.0    1.6  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    0.00026   21.5   0.2    0.00065   20.2   0.0    1.7  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.009   15.1   0.0      0.016   14.3   0.0    1.4  1  RmlD_sub_bind    RmlD substrate binding domain
  ------ inclusion threshold ------
      0.018   14.6   0.0      0.028   14.0   0.0    1.3  1  NmrA             NmrA-like family
      0.065   12.6   0.0       0.17   11.3   0.0    1.6  2  Glyco_hydro_101  Endo-alpha-N-acetylgalactosaminidase
      0.099   12.4   0.4         12    5.7   0.4    2.5  2  Maf_N            Maf N-terminal region
        0.1   12.9   0.0       0.16   12.2   0.0    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.1   0.0   2.2e-56   3.2e-53       2     188 ..       2     187 ..       1     194 [. 0.97

  Alignments for each domain:
  == domain 1  score: 180.1 bits;  conditional E-value: 2.2e-56
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfselsee 99 
                 +++vtGa++G+G  i ++++++G kv++++r+ee+l+++++el+++   ++++q+Dv++r+++e+l+++  ++++ +dvLvnNAG+  g +p+++ s e
  CTQ28037.1   2 IIMVTGATAGFGESITRRFIANGHKVIATGRREERLKTLKDELGDN---LYIAQLDVRNRAAIETLIADLPAEWQAIDVLVNNAGLaLGLEPAHRASVE 97 
                 689****************************************987...*************************************999********** PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS.SHHHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd.Tdmak 188
                 +we++i++N +g++ +travlp m+++++G+I+n++S+ag  p+ag+ +Y+A+Ka+v++++ +l+ +l+ t +rv+ + PGlv  T++ +
  CTQ28037.1  98 DWEDMIDTNNKGLVYMTRAVLPGMVERNRGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGgTEFSN 187
                 ***********************************************************************************9888765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.2   0.0   2.3e-40   3.5e-37       1     215 [.       7     220 ..       7     226 .. 0.95

  Alignments for each domain:
  == domain 1  score: 128.2 bits;  conditional E-value: 2.3e-40
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga  g G+ i +++ ++G +v++t ++ee+   +++l++elg + +  ++DV++++++e+l++++ ++++ +D+lvnnag a    +p++ +s e++
    CTQ28037.1   7 GATAGFGESITRRFIANGHKVIATGRREER---LKTLKDELGDNlYiAQLDVRNRAAIETLIADLPAEWQAIDVLVNNAGLALG-LEPAHRASVEDW 99 
                   899**********************99998...9********99635************************************9.999********* PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelle 190
                   ++++d+n ++l+++++a+lp +++++ g i+n+ s++++   ++ n+yga+Ka + +++ +l  +l    +Rv  + pg++  +  s+++ f+   +
    CTQ28037.1 100 EDMIDTNNKGLVYMTRAVLPgMVERNrGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVR-FKGDDA 195
                   ********************7666658*******************************************************99999997.999999 PP

                   HHHHHSTTSS-B-HHHHHHHHHHHC CS
  adh_short_C2 191 elearaplgrlgtpeevaeaalfLa 215
                   ++e+ +   ++ tpe+v ea+ + a
    CTQ28037.1 196 KAEKAYENTQALTPEDVTEAVWWVA 220
                   9********************9876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   1.5e-14   2.3e-11       4     165 ..       4     163 ..       2     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 1.5e-14
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE----.-----TTT- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgv.lrdklleem 100
                 ++tG++ g+G +++r  +++g + ++ ++R+       ++++++l++  g +  ++++Dv +++a+e+l++++ ae ++i   ++ Ag+ l  ++  + 
  CTQ28037.1   4 MVTGATAGFGESITRRFIANGHK-VIATGRR-------EERLKTLKDElGDNLYIAQLDVRNRAAIETLIADLPAEWQAIDVLVNNAGLaLGLEPAHRA 94 
                 89*******************76.7789999.......4678888886699**********************************99963679****** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs 165
                 + ed+e ++    kG+  + +++ +    ++  +++ + S ag +  ag   Y a+ af+ ++    r+
  CTQ28037.1  95 SVEDWEDMIDTNNKGLVYMTRAVLPgmveRNRGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRT 163
                 **********************99877778899**************************9999765544 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   5.1e-09   7.6e-06       1     116 [.       3     135 ..       3     176 .. 0.77
   2 ?   -1.2   0.0      0.78   1.2e+03     216     239 ..     210     227 ..     207     229 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 5.1e-09
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHHH.....HT-SEEEE--S.-....--HHHHHHSH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.....elveldltdrsalerlfke.....eqpdavihlAa.v....ggvaassedp 84 
                 i+VtGat   G  +++++ ++g++vi+  r++++ +t ++         + +ld+++r+a+e l+++     +++d+ ++ A+         +as+ed 
  CTQ28037.1   3 IMVTGATAGFGESITRRFIANGHKVIATGRREERLKTLKD--ElgdnlYIAQLDVRNRAAIETLIADlpaewQAIDVLVNNAGlAlglePAHRASVEDW 99 
                 79*****************************655555443..2479999***********999998744433468899987763311114678999999 PP

                 HHHHHHHTHHHHHHHHHHH....HHTCTEEEEEEEG CS
   Epimerase  85 adfieknlqgtlnlleaar....kagvkrllflsSs 116
                 +d+i++n +g + +  a+     +++   +++++S+
  CTQ28037.1 100 EDMIDTNNKGLVYMTRAVLpgmvERNRGHIINIGST 135
                 999999977766665555533335555577777775 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.78
                 HHHHHHHHHHHHHHTT-STTEEEE CS
   Epimerase 216 eDvaeaillvlehvdagdkgeiyn 239
                 eDv ea+++v++       ++++n
  CTQ28037.1 210 EDVTEAVWWVATL------PKHVN 227
                 8*********998......34455 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   6.5e-08   9.7e-05       1      61 [.       7      68 ..       7     182 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 6.5e-08
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT..TTCEEEE--TT-CCHHHHHHTT- CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaeleae..eglevvegdvtdvedlaealkga 61
                    GAt + G  ++++ +a+ gh+v a  R++e+l+ l++e  ++l + ++dv + ++++  +++ 
      CTQ28037.1  7 GATAGFGESITRRFIAN-GHKVIATGRREERLKTLKDElgDNLYIAQLDVRNRAAIETLIADL 68
                    9****************.5****************987778*****************99954 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.4e-07   0.00051       1     168 [.       3     190 ..       3     192 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.4e-07
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTE....EEE....E--TT-H.HHHHHHTT..T-SEEEE------ CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkkl....kveivpvigdvrdk.erlekaleelkvdvvfhaAAlKh 89 
                      ++vtGa+  +G++++r+++++  +k+i   r E +l ++++el ++l   +l    ++ i ++i+d+  + + ++ ++++ +  + +  A    
       CTQ28037.1   3 IMVTGATAGFGESITRRFIANG-HKVIATGRREERLKTLKDELGDNLYIAQLdvrnRAAIETLIADLPAEwQAIDVLVNNAGLALGLEPAHRAS 95 
                      8*****************9876.678899*************7554444333001134455666666433155555566666666666666666 PP

                      HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGSS--...SHHHHHHHHHHHHHHHGGG--SSS-.............-EEEEEE CS
  Polysacc_synt_2  90 VPlveenpleaiktNvlgtenvieaaieagvkkvvliStDKAvnPt...nvmGatKrlaekllqalakeseekk.............tkfvvvR 167
                      V   e  +    k  v+ t+ v+   +e +  +++ i +     P    nv+GatK++  ++  +l++  + +              t+f+ vR
       CTQ28037.1  96 VEDWEDMIDTNNKGLVYMTRAVLPGMVERNRGHIINIGSTAGSWPYaggNVYGATKAFVRQFSLNLRTDLHGTAvrvtdiepglvggTEFSNVR 189
                      6666665555555556667777777777777788888666665554344888888888887777776665444445555566666666666666 PP

                      E CS
  Polysacc_synt_2 168 f 168
                      f
       CTQ28037.1 190 F 190
                      5 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   4.4e-07   0.00065      10      52 ..      12      50 ..       5      68 .. 0.82
   2 ?   -3.1   0.0         8   1.2e+04      49      60 ..     203     214 ..     191     237 .. 0.53

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.4e-07
                   HHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEEC CS
  F420_oxidored 10 mgealasgllaagaqpheivvansrnpekaeelaeelgvkvta 52
                   +ge+++++++a+g   h+++ a+ r +e+++ l++elg ++  
     CTQ28037.1 12 FGESITRRFIANG---HKVI-ATGRREERLKTLKDELGDNLYI 50
                   79***********...****.99**************944433 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8
                    EEECECHHHHHH CS
  F420_oxidored  49 kvtavdneeaae 60 
                    +++a + e++ e
     CTQ28037.1 203 NTQALTPEDVTE 214
                    444444444443 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.1e-05     0.016       1      51 [.       1      69 [.       1      84 [. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.1e-05
                   EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT..................T--TTSHHHHHHHHHHH- CS
  RmlD_sub_bind  1 mkilvtGanGqlGseLakqlaeeglevlaltre..................eldltdaeavaellkeak 51
                   m i+vtGa+   G  +++++ ++g++v+a++r+                  +ld+++++a+++l+++  
     CTQ28037.1  1 MIIMVTGATAGFGESITRRFIANGHKVIATGRReerlktlkdelgdnlyiaQLDVRNRAAIETLIADLP 69
                   679***************************99999***************************9997754 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.8e-05     0.028       1      63 [.       3      66 ..       3      75 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHS.TTEEE..ES-TT-HHHHHHHHT CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkea.Gvelv..kgdlddkeslvealk 63
                I+v+GaT   G+s++r ++++ghkv a  R   +e++k+lk++ G +l   + d+ +++ +++++ 
  CTQ28037.1  3 IMVTGATAGFGESITRRFIANGHKVIATGRR--EERLKTLKDElGDNLYiaQLDVRNRAAIETLIA 66
                89*************************9995..566777775435444325777888888887775 PP

>> Glyco_hydro_101  Endo-alpha-N-acetylgalactosaminidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00011      0.17     144     182 ..      23      70 ..      14     106 .. 0.73
   2 ?   -2.1   0.0       1.3     2e+03     108     127 ..     226     245 ..     211     248 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
                      -HHHHHHTT.HHHHHHHHHHHH-.T--EEEEESTSTTS.........H CS
  Glyco_hydro_101 144 dsreDlasgkllkRfkelreelgeeldfiYvDvyresg.........w 182
                      + ++ +a+g++++R+k+l++elg++l +  +Dv ++++          
       CTQ28037.1  23 NGHKVIATGRREERLKTLKDELGDNLYIAQLDVRNRAAietliadlpA 70 
                      6677899**************************977664444444442 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
                      EEEESSEE-TTSSS--CCCB CS
  Glyco_hydro_101 108 vhvnatetypeakafeeelv 127
                      v +n+ e+ p +++f    v
       CTQ28037.1 226 VNINTLEMMPVSQSFAGLSV 245
                      44567899999999976555 PP

>> Maf_N  Maf N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.4    0.0083        12      23      31 ..     207     215 ..     203     217 .. 0.89
   2 ?    5.4   0.0      0.01        15       4      22 ..     214     232 ..     213     235 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0083
       Maf_N  23 LtpEDAvEa 31 
                 LtpED+ Ea
  CTQ28037.1 207 LTPEDVTEA 215
                 9*******9 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.01
       Maf_N   4 EdLYWmatyqQqlnpeaLg 22 
                 E   W at++ ++n   L+
  CTQ28037.1 214 EAVWWVATLPKHVNINTLE 232
                 5568*********977776 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011      0.16       5      80 ..       7      85 ..       3     123 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
                     --.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS.......SEEEE-SSGG CS
  Sacchrp_dh_NADP  5 Ga.GsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg.......dlvvnlsppi 80
                     Ga  + G+++++   ++++   +++  +r +e+l+ l+++ lg ++ +++ld+ n++a ++ l+++        d++vn ++  
       CTQ28037.1  7 GAtAGFGESITRRFIANGH---KVIATGRREERLKTLKDE-LGDNLYIAQLDVRNRAA-IETLIADLpaewqaiDVLVNNAGLA 85
                     6655667777777777665...699999999999888766.9****************.****998877777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2147.75
//
Query:       CTQ28038.1  [L=681]
Description: dipeptidyl carboxypeptidase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.8e-133  444.3   0.1   8.5e-133  444.0   0.1    1.1  1  Peptidase_M3  Peptidase family M3


Domain annotation for each model (and alignments):
>> Peptidase_M3  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  444.0   0.1  4.7e-137  8.5e-133       4     457 ..     232     678 ..     229     679 .. 0.95

  Alignments for each domain:
  == domain 1  score: 444.0 bits;  conditional E-value: 4.7e-137
                   C-S-HHHHHHHHHHHCTTTCCSS..THHHHHHHHHHHHHHHHHHHTT-SSHHHHHHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
  Peptidase_M3   4 espdrelRkeayeashskaaeqrntlensklleellklraelAkllgyesyaelaledkmaknpetvldfleelvkklrpllekelkllkelkkkel 100
                     +dr++R++++ a ++++++  ++ ++++l  +l   ra +A+llg  +ya++al d+ma +p ++l f++++  ++r  +e+el+++++++++e 
    CTQ28038.1 232 ALRDRQTRENLFAAGWTRNQQ-GDEHDTRALVLRLAAIRAHQAELLGAADYASWALTDQMAASPAEALGFMRQIAPAARARAERELADIQQVIDNEG 327
                   6689**************665.667889********************************************************************* PP

                   T-SSS--CCCHHHHHHHHHCCCCS--CCCCGGG-BHHHHHH.CHHHHHHHHHTEEEEEETTS..--SSTT-EEEEEEET.TT-EEEEEEEEEEC--T CS
  Peptidase_M3 101 glegelqpwDvaYYsekqreekydldqeelkeyfpletvle.GllelfeeLfGikfveekdakgevwhedVrkleVvdeilsegligeiylDlyerk 196
                   g + +  +wD+ YYse++r++ y++d+ +lk+yf le+vl  G+++++++LfG++fve+ d+  +v+h+dVr++e++d+  +++ ++ +y D+y+r+
    CTQ28038.1 328 GGF-RATAWDWLYYSEQVRRAAYAIDDAQLKPYFALERVLHdGVFWTASQLFGLRFVERFDI--PVYHPDVRVWEIFDH--NGEGMALFYGDYYARD 419
                   99*.************************************99********************..***************..55555*********** PP

                   TS-SS-EEEEEE--BTTS-B--EEEEEEEEE---BTTS--B--HHHHHHHHHHHHHHHHHHC--BSSGGGSTT-S-CCCCCHHHHHHHHGGGSHHHH CS
  Peptidase_M3 197 gKrggAasfglvksredgtrqlpviylllNftkpsskkPsLLtldevetLfHEfGHsmHsllsrteysnvsgtnvpidfvElpSqlmEnlltepevl 293
                   +K ggA++  +v+++   + q pviy ++N+++p++++ +LL++dev tLfHEfGH++H l+++++y+++sgtn+p+dfvE+pSq+ E+++ +p+v 
    CTQ28038.1 420 SKSGGAWMDVFVEQS-TLRAQRPVIYNVCNYVRPQAGQSALLSWDEVITLFHEFGHTLHGLFASQRYASLSGTNTPRDFVEFPSQIFEHWASQPQVF 515
                   *************84.456899*************************************************************************** PP

                   HCC-B-TTT--B--HHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHCTT-TCCGHH....HHH.HHHHHHHCTTSCTTBTTSSGGGC-CCCHTSS-TT CS
  Peptidase_M3 294 kslskhyetgeaipeelleklikaknvnaalellrqlvfaafdqelHeeaeeeqilkkdlle.tyaelrkkflglpvapdeasqasFghlfahgYaa 389
                   + ++khy++ge++p+ l +++++a ++n+++++ + l  a +d+++H+      +++  +++ +   lr++ l l ++p+++ + +F+h+f +gYaa
    CTQ28038.1 516 AHYAKHYQSGEPMPQALRDNMLRAATFNKGYDMSELLAAALLDMRWHSLSTSALPEE--VDAfEQLVLREENLDLAAVPPRYRSSYFSHIFGGGYAA 610
                   **************************************************9988766..444334457889999*********************** PP

                   TTCHHHHHHHHHHHHHHCCHHCCTT-CCHHHHHHHHTTTTTTSS-HHHHHHCCCSS---SHHHHHHCT CS
  Peptidase_M3 390 nYYsylyaevlaldifekffeedplnretGeryrkeiLsrGgskdplellkkflgrepsadallkalg 457
                   +YY+yl+ ++la d +++f e++ l+re+G+r+r++iLsrG+s d +el+++++g +p+ +++lk  g
    CTQ28038.1 611 GYYAYLWTQMLADDGYQWFVEQGGLTRENGQRFREAILSRGNSTDLAELYRQWRGHDPQIEPMLKNRG 678
                   ***************************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 4422.41
//
Query:       CTQ28039.1  [L=128]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-06   26.6   0.1    8.3e-06   26.4   0.1    1.1  1  SnoaL_2   SnoaL-like domain
  ------ inclusion threshold ------
      0.031   14.1   0.0      0.037   13.8   0.0    1.1  1  SnoaL     SnoaL-like polyketide cyclase


Domain annotation for each model (and alignments):
>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.1   9.3e-10   8.3e-06      17     100 ..      24     106 ..       6     108 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 9.3e-10
                 HHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEETTEEEEEEEEEEEEETTSSEEEEEEEEEEEEET.TEEE CS
     SnoaL_2  17 aalfapdvvwedpggelrGreairaffralfaafpdlrfeihdvvadgdrvavewtvtgtipatgrgvtvrgvdvfrvrd.Gkiv 100
                  ++f+p ++++    +++G ++++++ r+l++ +   ++e+hd + +g+  a++ +v   ++++g++v+++++ + +++d G+  
  CTQ28039.1  24 SRYFSPGYRQRTDN-KWEGLDGFAQHARRLREIIAFAKIELHDELRNGNLYATRHRVLC-TRRSGEEVDMEVYMFAEIDDsGRFI 106
                 47899999999876.6**************************************99998.9*****************7768865 PP

>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.1e-06     0.037       3      96 ..       4     107 ..       2     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.1e-06
                 HHHHHHHHHHTT-H...HHHHGTEEEEEEETCCTTTCECHHHHHHHHHHHHHHHCTTCEEEEEEEEEETTEEEEEEEEEEEES.SEBTT........BE CS
       SnoaL   3 vlrfyeevwnsgdl...daldelvaedvvdhnpeeeparGlegfrafveelfkafPDlkvevedlvaegdkvaarltftGtht.geflG........ip 89 
                 + r ++e++n++++   + l +++++ + +++    +  Gl+gf++++++l++ +   k+e +d +  g   a+r ++ +t + ge ++        i 
  CTQ28039.1   4 ITRVLDEIINHQQTpldRILSRYFSPGYRQRTD--NKWEGLDGFAQHARRLREIIAFAKIELHDELRNGNLYATRHRVLCTRRsGEEVDmevymfaeID 100
                 678999999999998888899*****9999966..899***************99999******************99999875666664444444444 PP

                 -TT-EEE CS
       SnoaL  90 ptGkkvk 96 
                  +G+ ++
  CTQ28039.1 101 DSGRFIR 107
                 4555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1059.67
//
Query:       CTQ28040.1  [L=280]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-26   90.5   0.6    1.4e-25   89.3   0.6    1.6  1  HTH_18        Helix-turn-helix domain
    2.3e-13   49.9   0.0    3.7e-06   26.9   0.0    2.5  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
    3.2e-07   30.3   0.3    6.6e-07   29.3   0.1    1.7  2  AraC_binding  AraC-like ligand binding domain
    0.00028   20.5   0.4    0.00045   19.9   0.4    1.2  1  Cupin_2       Cupin domain
     0.0016   18.2   0.6       0.76    9.6   0.0    2.5  2  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.019   15.1   0.4        5.5    7.2   0.0    2.7  2  HTH_28        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.6   4.7e-29   1.4e-25       1      78 [.     203     278 ..     203     279 .. 0.97

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 4.7e-29
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPsey 78 
                 +aa +g+s rtL+r+f++++g ++ e+++r+Rl rA +lL+  +g++v++iAl+lG+++ s+F++ fr++fg+tP++y
  CTQ28040.1 203 WAAWAGMSSRTLTRRFRAETGFSFNEWRQRIRLLRALELLA--AGKPVTAIALDLGYDNVSAFIALFRRMFGTTPGRY 278
                 7999**********************************996..7********************************99 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.3e-09   3.7e-06       3      42 .]     192     231 ..     190     231 .. 0.89
   2 !   20.7   0.0   1.1e-07   0.00033       8      40 ..     245     278 ..     241     278 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.3e-09
                 CCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   3 enlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                  n++++ ++e+ A+ +g+S+++++r+F++etG +++++r+
  CTQ28040.1 192 ANPDDGRRLEEWAAWAGMSSRTLTRRFRAETGFSFNEWRQ 231
                 6777777888889999***********************7 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 1.1e-07
                 T--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHH CS
    HTH_AraC   8 nltiediAdelgf.SrsyFsrlFkketGmtPsqy 40 
                 ++ ++ iA  lg+ + s F+ lF++ +G tP  y
  CTQ28040.1 245 GKPVTAIALDLGYdNVSAFIALFRRMFGTTPGRY 278
                 567999*************************887 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   2.2e-10   6.6e-07      15      96 ..      55     134 ..      44     192 .. 0.85
   2 ?   -3.1   0.0       2.3   6.8e+03      90     113 ..     220     242 ..     206     245 .. 0.65

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2.2e-10
                   SEEEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG---EEETTEE CS
  AraC_binding  15 sfpphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegelleriledssilagapl 96 
                   ++p+h+h+  +++  ++G  ++  ++ ++ +++ + +++ppg+pH ++s++  +++  ++y+++ +  ++ +  s+l +  l
    CTQ28040.1  55 ETPRHHHSCGQLIGAIRGLLTVDGGDCRWVVPATHAVWIPPGVPHGLRSHG--PYSGWSVYVSAKACGELPDKPSVLSMTNL 134
                   789************************************************..99999999999888888777777766654 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.3
                   EEETTEEE..E---TTTHHHHHHH CS
  AraC_binding  90 ilagapllpalledeelaqllral 113
                      g++++  +++ ++l+++l+ l
    CTQ28040.1 220 AETGFSFNE-WRQRIRLLRALELL 242
                   344444444.88888888888765 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.4   1.5e-07   0.00045      10      61 ..      55     105 ..      45     112 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.5e-07
                 EEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-S CS
     Cupin_2  10 sapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtg 61 
                 ++p+h+H+   +++  ++G +++  ++ ++++ a  +v +p+g+pH++r +g
  CTQ28040.1  55 ETPRHHHSCG-QLIGAIRGLLTVDGGDCRWVVPATHAVWIPPGVPHGLRSHG 105
                 5688888888.*************************************9988 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00026      0.76       8      46 ..     184     224 ..     177     226 .. 0.77
   2 !    6.4   0.2    0.0026       7.8       5      28 ..     232     256 ..     228     258 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00026
      HTH_23   8 lrillllae....GlsvreIAreLgvsrrTvyrwlkryreeGl 46 
                 lri+++l      G + +e A+  g+s rT+ r  ++  e G+
  CTQ28040.1 184 LRIAQALSAnpddGRRLEEWAAWAGMSSRTLTRRFRA--ETGF 224
                 4566666644557*******************87776..6776 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0026
      HTH_23   5 reRlr.illllaeGlsvreIAreLg 28 
                 r+Rl+ +l lla G++v++IA  Lg
  CTQ28040.1 232 RIRLLrALELLAAGKPVTAIALDLG 256
                 5555559999999*******97666 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0079        24      11      31 ..     196     216 ..     184     223 .. 0.75
   2 ?    7.2   0.0    0.0019       5.5       3      24 ..     236     257 ..     236     262 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0079
      HTH_28  11 aGhsvreaArelgisrrtvyr 31 
                 +G++  e A++ g+s+rt+ r
  CTQ28040.1 196 DGRRLEEWAAWAGMSSRTLTR 216
                 49999*************966 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0019
      HTH_28   3 leiikllaaGhsvreaArelgi 24 
                 l++++llaaG++v+++A  lg 
  CTQ28040.1 236 LRALELLAAGKPVTAIALDLGY 257
                 799**************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2200.53
//
Query:       CTQ28041.1  [L=224]
Description: hypothetical protein CH1034_220017 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-49  166.8   0.0    5.6e-49  166.6   0.0    1.0  1  SRAP      SOS response associated peptidase (SRAP)


Domain annotation for each model (and alignments):
>> SRAP  SOS response associated peptidase (SRAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.6   0.0   3.1e-53   5.6e-49       1     219 []       1     211 [.       1     211 [. 0.87

  Alignments for each domain:
  == domain 1  score: 166.6 bits;  conditional E-value: 3.1e-53
        SRAP   1 MCgRyaltlapeelaeeleae.eedke......lrpsynvaptqkvpvvvaeeeeeeeeeeerklqamkwGlvPswakdpkklglktiNaRsetlaekp 92 
                 MCgR+a+++++ee+ ++l ++ e+  +      +  +ynvap++kv+++ +++e+        +l+a+ wG+ P w ++p      +iNaR et a+++
  CTQ28041.1   1 MCGRFAQAQSREEYLAHLVEAaER--DiawdpaPIGRYNVAPGTKVLLLNERDEQ-------LHLDAVYWGYAPGWWDKP-----PLINARVETAASSR 85 
                 ********9999988877643222..23345446778***********9844444.......89*************887.....79************ PP

        SRAP  93 lfrsalkkkRcvvpadGFYEWkkkgkekqPyfikrkdgkllalAGLydvweeegeeeklytytiiTteankqlaelHdRmPviLeeeelraWLdprked 191
                 +f+ ++++ R++ +adG++EWkk+g++kqPyfi+rkd++++++A++  +  e+g  ++   + i+T++a++ l ++HdR P++L++e++r+W+ + + +
  CTQ28041.1  86 MFKPLWEHGRAICFADGWFEWKKEGNKKQPYFIQRKDDQPIFMAAIGRTPFERG--DHAEGFLIVTAAADRGLVDIHDRRPLVLTPEAAREWMRQ-DVT 181
                 **********************9*************************998888..99************************************9.666 PP

        SRAP 192 skelqell..kpaeeeelevypVskeVnkv 219
                  +e++e+     +++++++++pV+++V++v
  CTQ28041.1 182 GAEAAEIAsdGAVSADDFTWHPVTRAVGNV 211
                 6666665522344668************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1669.22
//
Query:       CTQ28042.1  [L=218]
Description: putative 2-component transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-12   46.7   0.4    1.6e-12   46.7   0.4    1.9  3  GerE          Bacterial regulatory proteins, luxR family
     0.0014   18.3   0.0     0.0041   16.9   0.0    1.7  1  HTH_23        Homeodomain-like domain
     0.0038   17.7   0.2      0.017   15.6   0.3    2.0  2  HTH_40        Helix-turn-helix domain
     0.0077   16.0   0.2      0.033   14.0   0.1    2.1  2  HTH_38        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.023   14.9   0.0      0.051   13.8   0.0    1.5  1  DUF3342       Domain of unknown function (DUF3342)
      0.023   14.3   0.1      0.047   13.3   0.1    1.5  1  HTH_50        Helix-turn-helix domain
      0.027   14.5   0.0      0.054   13.5   0.0    1.5  1  HTH_29        Winged helix-turn helix
      0.082   12.5   0.0       0.24   11.0   0.0    1.8  1  HTH_24        Winged helix-turn-helix DNA-binding
       0.11   12.3   0.0        0.3   10.8   0.0    1.7  1  Sigma70_r4_2  Sigma-70, region 4
       0.22   11.4   0.2       0.57   10.1   0.0    1.8  2  Terminase_5   Putative ATPase subunit of terminase (gpP-like)


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       3.2   5.8e+03      22      29 ..      32      39 ..      31      41 .. 0.81
   2 ?   -2.9   0.0       2.8   5.1e+03      21      28 ..     120     127 ..     119     131 .. 0.76
   3 !   46.7   0.4   9.2e-16   1.6e-12       2      56 ..     151     205 ..     150     206 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.2
                HHHHHHTS CS
        GerE 22 eIAeelni 29
                eIA+e +i
  CTQ28042.1 32 EIAKEEHI 39
                89*99998 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.8
                 HHHHHHHT CS
        GerE  21 keIAeeln 28 
                 ++IA++l 
  CTQ28042.1 120 NQIAKRLT 127
                 69999986 PP

  == domain 3  score: 46.7 bits;  conditional E-value: 9.2e-16
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                 +L+k ++ +   + +G+ n++IA++l+iS kT+ +hk nimkK+++  ++el+r+
  CTQ28042.1 151 TLTKSQLYIIDAIRTGMNNQQIAQKLGISHKTIFSHKINIMKKFQIATKQELTRF 205
                 69999999999*****************************************986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.3e-06    0.0041      10      34 ..     159     183 ..     156     186 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.3e-06
      HTH_23  10 illllaeGlsvreIAreLgvsrrTv 34 
                 i+ + + G++ ++IA++Lg+s+ T+
  CTQ28042.1 159 IIDAIRTGMNNQQIAQKLGISHKTI 183
                 8999999*****************8 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.9   3.3e+03      47      62 ..      28      44 ..      20      83 .. 0.67
   2 !   15.6   0.3   9.5e-06     0.017       8      45 ..     162     198 ..     156     212 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.9
      HTH_40 47 rlvse.eeekeIeeaie 62
                +l+se  +e++I+e + 
  CTQ28042.1 28 ELLSEiAKEEHIREPYS 44
                55555555555555444 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 9.5e-06
      HTH_40   8 lleeglsieeIAkerglkesTIegHLaelieegeeidl 45 
                  ++ g++ ++IA++ g++ +TI +H ++++++ + i  
  CTQ28042.1 162 AIRTGMNNQQIAQKLGISHKTIFSHKINIMKKFQ-IAT 198
                 5789*********************999999965.544 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         1   1.9e+03      25      33 ..     121     129 ..     119     132 .. 0.74
   2 !   14.0   0.1   1.8e-05     0.033      15      37 ..     161     183 ..     146     184 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1
      HTH_38  25 eIArrLgrs 33 
                 +IA+rL  s
  CTQ28042.1 121 QIAKRLTES 129
                 799999665 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.8e-05
      HTH_38  15 rllaeGlslreIArrLgrspsTI 37 
                 + +  G+++ +IA++Lg s+ TI
  CTQ28042.1 161 DAIRTGMNNQQIAQKLGISHKTI 183
                 56789*****************9 PP

>> DUF3342  Domain of unknown function (DUF3342)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.9e-05     0.051      10      84 ..     139     214 ..     134     217 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.9e-05
     DUF3342  10 knekrdfrCaqdlLetemrYfeeiikryiseaqrleeidirvnCdlsifdWLmkyvkk....kkrkltpenvvsillss 84 
                 k+++r  +C++  L+++  Y  + i++ ++++q  +++ i+ +   +if+  ++ +kk     k++lt    v+++ls+
  CTQ28042.1 139 KDSRRCVKCPRLTLTKSQLYIIDAIRTGMNNQQIAQKLGISHK---TIFSHKINIMKKfqiaTKQELTRFSSVALALSA 214
                 5678899*********************************965...79999999999999989999**********997 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.6e-05     0.047      28      49 ..     171     196 ..     159     197 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.6e-05
      HTH_50  28 klAkrLGvShtai....anklrkYgI 49 
                  +A++LG+Sh +i    +n ++k++I
  CTQ28042.1 171 QIAQKLGISHKTIfshkINIMKKFQI 196
                 58***********6666688999999 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     3e-05     0.054       4      32 ..     159     186 ..     157     188 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3e-05
      HTH_29   4 allllaeGvstvsqiAkllglsrrtvyrw 32 
                 ++ +++ G+ + +qiA+ lg+s +t++ +
  CTQ28042.1 159 IIDAIRTGM-NNQQIAQKLGISHKTIFSH 186
                 688999***.9***************875 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00013      0.24      17      34 ..     166     183 ..     158     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
      HTH_24  17 risqreLAerlglSpstv 34 
                 +++++++A++lg+S  t+
  CTQ28042.1 166 GMNNQQIAQKLGISHKTI 183
                 799***********9887 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00017       0.3      26      46 ..     166     186 ..     165     193 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00017
                   ---HHHHHHHHT--HHHHHHH CS
  Sigma70_r4_2  26 glsykEIAellgisegtVksr 46 
                   g+  ++IA++lgis +t+ s+
    CTQ28042.1 166 GMNNQQIAQKLGISHKTIFSH 186
                   7899*************9998 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.1   5.6e+03      46      57 ..     116     127 ..     114     128 .. 0.73
   2 ?   10.1   0.0   0.00032      0.57      17      34 ..     170     187 ..     165     201 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.1
  Terminase_5  46 srveeaieaRlv 57 
                   rv+  i++Rl+
   CTQ28042.1 116 RRVKNQIAKRLT 127
                  678888888875 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00032
  Terminase_5  17 aeIAeelglkeatVysWk 34 
                  ++IA+ lg++++t+ s k
   CTQ28042.1 170 QQIAQKLGISHKTIFSHK 187
                  79************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1738.84
//
Query:       CTQ28043.1  [L=121]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1053.77
//
Query:       CTQ28044.1  [L=65]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       131  (0.0073066); expected 358.6 (0.02)
Passed bias filter:                      119  (0.00663729); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 529.96
//
Query:       CTQ28045.1  [L=157]
Description: Heat shock protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-14   53.5   0.0    2.6e-14   53.2   0.0    1.1  1  HSP20       Hsp20/alpha crystallin family
    0.00089   18.8   0.0     0.0016   18.0   0.0    1.5  1  ArsA_HSP20  HSP20-like domain found in ArsA


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   2.9e-18   2.6e-14       3     101 ..      47     146 ..      45     147 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 2.9e-18
                 -SSEEEEEEEEE-TT--CCCEEEEEETTEEEEEEE--......---TT----SS---EEEEEE--STTB-TTT-EEEEETTEEEEEEEBSS--..---- CS
       HSP20   3 keeeeefevkldvpglkkeelkvkvednrvlvkgehe....eeeedekglikerssrkFsrkftLPenvdadkvkaslkdGvLtvtvpkkepekkkker 97 
                 k+++++f +++ vpg k +el++++ ++++ ++g+++    + +++e++++k+ ++ +F+ +f+LPe +  ++  a+l+ G+L++ + ++ pe++ k+r
  CTQ28045.1  47 KVDDSNFLLSVSVPGWKDDELEIETVGGNLHISGKRQetdaSTDSGERWIYKGIRRANFQLSFSLPEHAQINQ--AQLDSGILKIAIHQEIPESE-KPR 142
                 67899*******************************9999889999*********************998885..999**************976.*** PP

                 ---- CS
       HSP20  98 kiqi 101
                 ki+i
  CTQ28045.1 143 KIAI 146
                 **99 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.8e-07    0.0016       2      61 ..      51     129 ..      50     131 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.8e-07
  ArsA_HSP20   2 deyvlkldLPfvdkeeidlsrsgdeLtIkig......................nfrRqitLPsvlarkevtsAkfedgvLeI 61 
                 +++ l++ +P+ +++e++++ +g  L I+ +                      nf+ +++LP++    ++ +A++  g L+I
  CTQ28045.1  51 SNFLLSVSVPGWKDDELEIETVGGNLHISGKrqetdastdsgerwiykgirraNFQLSFSLPEH---AQINQAQLDSGILKI 129
                 567899*********************************************************9...668899*****9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1259.23
//
Query:       CTQ28046.1  [L=170]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-51  171.4   3.2    1.1e-50  171.2   3.2    1.0  1  CinA      Competence-damaged protein


Domain annotation for each model (and alignments):
>> CinA  Competence-damaged protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   3.2   6.1e-55   1.1e-50       2     154 ..      13     165 ..      12     166 .. 0.98

  Alignments for each domain:
  == domain 1  score: 171.2 bits;  conditional E-value: 6.1e-55
        CinA   2 eslaeevvkllkkkgltlatAEScTGGllaaaltsvpGaSavfeggvvtYsneaKeelLgvseetleehgavSeevaeemaegarerlgadiavavtGi 100
                 ++l++ev+++l+++g++l+tAEScTGG laaal++ +++ a+++ gvvt+s+eaK+++L+v++etl+ h avSe++++em  g+++ +gadia+av+G+
  CTQ28046.1  13 HELTAEVARALIARGWRLTTAESCTGGNLAAALCAQADTAAFYDTGVVTFSDEAKRNVLQVRAETLAVHSAVSEACVQEMSYGILALAGADIAIAVSGY 111
                 57899********************************************************************************************** PP

        CinA 101 AGpsggteekpvGtvyialagkggveveklefegdreeireaavkaALellrel 154
                 AGp+gg++++p+Gtv++a+  +g++e++++ f gd e++ ++av++AL+ l e 
  CTQ28046.1 112 AGPEGGEDGTPAGTVWFAWNFRGQTETKRMCFAGDCETVVAKAVRYALAALSEK 165
                 *************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1338.79
//
Query:       CTQ28047.1  [L=405]
Description: Blue light-and temperature-regulated antirepressor YcgF [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-46  158.1   0.0    4.1e-46  157.4   0.0    1.3  1  EAL       EAL domain
    2.6e-22   78.7   0.0    4.7e-22   77.9   0.0    1.4  1  BLUF      Sensors of blue-light using FAD
  ------ inclusion threshold ------
        0.5   10.2   2.5        1.2    8.9   2.5    1.6  1  Rz1       Lipoprotein Rz1 precursor


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.4   0.0   6.9e-50   4.1e-46      15     238 .]     171     386 ..     161     386 .. 0.94

  Alignments for each domain:
  == domain 1  score: 157.4 bits;  conditional E-value: 6.9e-50
                 EEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--C.HHCC-CCHHHHHHHHHHC CS
         EAL  15 lyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlsp.asladeefleelrellkq 112
                 +++Q +v+ ++++v  +eal+r  +  gg  + e f ++a+++++  +l++ +   al+   +l     ++++l+inl p +  ++++++ +l + l +
  CTQ28047.1 171 FALQAIVEPAKKRVSSFEALIRSPT--GGS-PVEMFAAIAAEDRYRFDLESKAYAFALA--GQLP---LGKHQLAINLLPgSLYHHPDAVGWLMDSLLA 261
                 789*****************99855..563.7789999999999999999999888888..5555...8899********89999999******88889 PP

                 CT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHHCCCT-EEEE- CS
         EAL 113 sgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalialakelgikvvae 211
                 +g++p+++ +e+te+e+++  ++ + +vl++Lr +G ++a+ddfg+gys ls+l+r++pd iK+d++l++d++ ++ +qa+v+++++++++lgi+vvae
  CTQ28047.1 262 AGLRPDQVLIEVTETEVITCFDQFR-KVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAE 359
                 9************************.************************************************************************* PP

                 S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 212 gVeteeqlealrelgcdlvQGyllskp 238
                 gVet e++ +l++ g++l+QG+l+s+p
  CTQ28047.1 360 GVETLEEWCWLQSVGIRLFQGFLFSRP 386
                 **************************9 PP

>> BLUF  Sensors of blue-light using FAD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   7.8e-26   4.7e-22       1      91 [.       2      92 ..       2      93 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 7.8e-26
                EEEEEEEEEE.TTS-HHHHHHHHHHHHHHHHHHTEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHT-TTEEEEEEEEEEEESS-SSTTCSS CS
        BLUF  1 LvrliYvSkaaeelseeeleeileesrenNkelgitGvLlydegvflQvLEGeeeaveelyerIkkDpRhkdvevleeeeieersFskwsm 91
                L++liY+S+ +++    +l++++++++++N  lgitG+Ll+++ +f+QvLEG+eea+e+l+++I++DpRh+dv+ l+++  + r+F+   m
  CTQ28047.1  2 LTTLIYRSQVHPDRPPVDLDALVHRASSKNLPLGITGILLFNGLQFFQVLEGTEEALESLFSEIQSDPRHRDVVELMRDYSAYRRFHGTGM 92
                689*****999***************************************************************************99888 PP

>> Rz1  Lipoprotein Rz1 precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.5   0.00021       1.2       9      25 ..     140     156 ..     138     161 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00021
         Rz1   9 CQvkPPaPPAWamqppp 25 
                 C + P+ P  W+m+p++
  CTQ28047.1 140 CLPEPLQPSRWMMMPAS 156
                 7789***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2752.16
//
Query:       CTQ28048.1  [L=76]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 580.93
//
Query:       CTQ28049.1  [L=203]
Description: putative LuxR family regulatory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-12   45.8   0.1    5.2e-12   45.1   0.1    1.3  1  GerE          Bacterial regulatory proteins, luxR family
     0.0038   17.0   0.0     0.0086   15.8   0.0    1.5  1  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
      0.068   13.1   0.0       0.14   12.1   0.0    1.5  1  Terminase_5   Putative ATPase subunit of terminase (gpP-like)
      0.083   13.3   0.1       0.26   11.8   0.0    1.9  2  HTH_40        Helix-turn-helix domain
      0.085   12.5   0.0       0.18   11.5   0.0    1.6  1  Sigma70_r4_2  Sigma-70, region 4
       0.14   11.8   0.1       0.45   10.1   0.0    1.9  2  HTH_24        Winged helix-turn-helix DNA-binding
       0.19   11.3   0.0       0.35   10.4   0.0    1.4  1  Sigma70_r4    Sigma-70, region 4


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.1     2e-15   5.2e-12      10      53 ..     150     193 ..     142     197 .. 0.88

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 2e-15
                 HHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHH CS
        GerE  10 vLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvel 53 
                 v   +  G+s  e+A++lniS+kT+++hk+nim+K+n++sr++ 
  CTQ28049.1 150 VIYAFSIGLSPHEVAAALNISPKTIHSHKKNIMSKFNLNSRQQF 193
                 6666788**********************************995 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.4e-06    0.0086      10      35 ..     150     175 ..     147     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.4e-06
      HTH_23  10 illllaeGlsvreIAreLgvsrrTvy 35 
                 +++++  Gls++e+A++L++s+ T+ 
  CTQ28049.1 150 VIYAFSIGLSPHEVAAALNISPKTIH 175
                 7899999*****************96 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.5e-05      0.14      13      35 ..     157     179 ..     151     184 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.5e-05
  Terminase_5  13 GyrvaeIAeelglkeatVysWkk 35 
                  G ++ e+A++l+++++t++s kk
   CTQ28049.1 157 GLSPHEVAAALNISPKTIHSHKK 179
                  6689****************997 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.8   1.5e+04      54      62 ..     110     118 ..     106     126 .. 0.70
   2 ?   11.8   0.0    0.0001      0.26       9      32 ..     154     177 ..     146     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.8
      HTH_40  54 ekeIeeaie 62 
                 ++eI++aie
  CTQ28049.1 110 KDEIANAIE 118
                 567777766 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0001
      HTH_40   9 leeglsieeIAkerglkesTIegH 32 
                 +  gls++e+A+  +++++TI +H
  CTQ28049.1 154 FSIGLSPHEVAAALNISPKTIHSH 177
                 6779******************** PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     7e-05      0.18      26      48 ..     157     179 ..     133     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7e-05
                   ---HHHHHHHHT--HHHHHHHHH CS
  Sigma70_r4_2  26 glsykEIAellgisegtVksrls 48 
                   gls  E+A+ l+is++t+ s+ +
    CTQ28049.1 157 GLSPHEVAAALNISPKTIHSHKK 179
                   89999***************965 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.86   2.2e+03      35      44 ..     103     112 ..     103     112 .. 0.84
   2 ?   10.1   0.0   0.00018      0.45      17      37 ..     157     177 ..     157     180 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.86
      HTH_24  35 nrrlkrLeee 44 
                 ++r++rL++e
  CTQ28049.1 103 HARVQRLKDE 112
                 689****986 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00018
      HTH_24  17 risqreLAerlglSpstvnrr 37 
                 ++s  e+A +l++Sp t++ +
  CTQ28049.1 157 GLSPHEVAAALNISPKTIHSH 177
                 68999*************987 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00014      0.35      20      47 ..     157     184 ..     144     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
                 T--HHHHHHHHTS-HHHHHHHHHHHHHH CS
  Sigma70_r4  20 glTleEIgerlgiSrerVrqiekrAlrk 47 
                 gl+ +E+++ l+iS  ++++++k+ + k
  CTQ28049.1 157 GLSPHEVAAALNISPKTIHSHKKNIMSK 184
                 67779*****************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1622.63
//
Query:       CTQ28050.1  [L=313]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-16   58.4   0.5      1e-15   57.7   0.5    1.4  1  HTH_18     Helix-turn-helix domain
    2.3e-08   33.9   0.3    2.5e-07   30.6   0.1    2.4  2  HTH_AraC   Bacterial regulatory helix-turn-helix proteins, Ar
    1.7e-05   25.2   0.0    3.7e-05   24.1   0.0    1.7  2  GyrI-like  GyrI-like small molecule binding domain
     0.0018   18.4   0.0     0.0025   18.0   0.0    1.3  1  Cass2      Integron-associated effector binding protein
  ------ inclusion threshold ------
      0.017   15.0   0.0       0.05   13.6   0.0    1.7  1  HTH_36     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.5   2.9e-19     1e-15       1      79 [.      31     108 ..      31     110 .. 0.98

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 2.9e-19
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyr 79 
                 la+ +g+srr ++ +f ++ +l+  +y+r +Rl  A   L+  t +++a+iA++l ++++++Fsr f+k+f ++P+eyr
  CTQ28050.1  31 LAQYMGYSRRFVYDVFYQYGQLPIGQYIRLRRLTIAAVSLR-LTRQPIAAIAWQLSYDSPQTFSREFKKRFSLSPREYR 108
                 799*************************************5.7***********************************9 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.17   5.9e+02      11      32 ..      28      49 ..      23      59 .. 0.84
   2 !   30.6   0.1   7.1e-11   2.5e-07       6      41 ..      72     108 ..      70     108 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.17
                HHHHHHHTTSSHHHHHHHHHHH CS
    HTH_AraC 11 iediAdelgfSrsyFsrlFkke 32
                i+d+A+  g+Sr+  + +F ++
  CTQ28050.1 28 IDDLAQYMGYSRRFVYDVFYQY 49
                89999999***99888888776 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 7.1e-11
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                  t+  i+ iA +l + S+++Fsr Fkk++  +P++yr
  CTQ28050.1  72 LTRQPIAAIAWQLSYdSPQTFSREFKKRFSLSPREYR 108
                 57789*******************************9 PP

>> GyrI-like  GyrI-like small molecule binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.4   1.6e+04     111     130 ..      11      29 ..       9      38 .. 0.70
   2 !   24.1   0.0     1e-08   3.7e-05      85     154 ..     218     291 ..     145     292 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.4
                 HHHHHHTHHHHTT-EEEESE CS
   GyrI-like 111 yaklygewlpesgyerrdgp 130
                 y k+ + wl+ + y   +  
  CTQ28050.1  11 YLKMLA-WLEDNIYCNPAID 29 
                 788999.9999888655555 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 1e-08
                 SEEEEE-SEEEEEEEEECEGGGHHHHHHHHHHTHHHHTT-EEEESEEEEEEECCCTS....SCGCEEEEEEEEE CS
   GyrI-like  85 lefleipageyAvfrhkGpyddlqatyaklygewlpesgyerrdgpsiEiYlsdpre....reeelkteiyipv 154
                  + l+   g+y+ +++ G+ + ++    +ly+e lp+ g +rrdg++iE+   +++e     +  +++ ++ipv
  CTQ28050.1 218 NSSLTTRSGLYVGVEFYGSWSRYARLSSDLYMELLPSLGVSRRDGYDIECFITRHAEgeeaGDRRYRVRYFIPV 291
                 56677889************************************************998888889999999998 PP

>> Cass2  Integron-associated effector binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   7.1e-07    0.0025      53     149 .]     183     291 ..     147     291 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 7.1e-07
                 EEEC-TT...-CCGEEEEEEEEE-TTSSS-TT...-EEEEE--EEEEEEEEESSSTT-HHHHHHHHHHCHCCHCTEEE-SSEEEEEESTTHHH...... CS
       Cass2  53 iyhdyes...eenkfsyyagvevpsdsevpeg...lvkkeiPggkYavftiegdfeedlaeaweaiygellpnsnyerrggpdfEvykeepae...... 139
                 + +dy++   +e ++++ a v +++  ++p+     ++ +  +g Y+ ++++g+ ++ +a++   +y ellp+ +  rr+g+d+E+   ++ae      
  CTQ28050.1 183 VLSDYAAaskNELNVEVNAFVGCHEAGKLPPAlamNSSLTTRSGLYVGVEFYGSWSR-YARLSSDLYMELLPSLGVSRRDGYDIECFITRHAEgeeagd 280
                 5555555544555555566666666666666633346778999*************8.*****************************666666656777 PP

                 .TEEEEEEEEE CS
       Cass2 140 .kseielyIPv 149
                   +++ + IPv
  CTQ28050.1 281 rRYRVRYFIPV 291
                 78889999997 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.4e-05      0.05       9      41 ..       9      41 ..       6      45 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
      HTH_36  9 lllgslasfankngg.cfpsqetlakrlglsknT 41
                +l++ +++   ++++ c+p  ++la+ +g s++ 
  CTQ28050.1  9 MLYLKMLAWL-EDNIyCNPAIDDLAQYMGYSRRF 41
                5677777777.45566***************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2385.19
//
Query:       CTQ28051.1  [L=454]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-128  429.8  46.7   1.2e-128  429.5  46.7    1.0  1  GntP_permease    GntP family permease
    1.8e-14   53.7  46.5    7.4e-14   51.6  46.5    1.9  1  CitMHS           Citrate transporter
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.33   11.1   0.0    1.7  1  UPF0767          UPF0767 family
          2    8.6  27.9        1.3    9.2   2.7    3.3  3  Na_H_antiport_2  Na+-H+ antiporter family


Domain annotation for each model (and alignments):
>> GntP_permease  GntP family permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.5  46.7  2.7e-132  1.2e-128       2     437 ..       6     450 ..       5     453 .. 0.92

  Alignments for each domain:
  == domain 1  score: 429.5 bits;  conditional E-value: 2.7e-132
  GntP_permease   2 pllivligvilllllviklklnafvaLllvsllvglvsGmpldkvvksiekGlGgtlGslaiiiglGamlGklledsGaaerialtlikklgkkkv 97 
                     lli+l++v+lllllvik+k ++fvaLl+vsllv++++G+p+dk++++iekG+Gg lG++a ii lG mlG l+e sG+ae++a+tl   lg k++
     CTQ28051.1   6 LLLIALASVVLLLLLVIKAKAHPFVALLIVSLLVAFATGIPADKIITTIEKGMGGLLGHIASIIILGSMLGVLIEMSGGAESLAKTLTGVLGAKRT 101
                    47888999**************************************************************************************** PP

  GntP_permease  98 qwalvlagfivgialFfevglvlLiplvfaiakeakisllklgiplvaalavvhgllpPhPgplavaellgadiGkvllyGlivaiptvii....a 189
                     +al++++fi+g ++Ffevg++++ipl++ ++k a++s+lk+g+p+++ +++vh++lp hPg+ a+a++l+ d+G+++l G+ v++ + i+    a
     CTQ28051.1 102 IAALTIVAFILGTPVFFEVGFIIIIPLIYGFSKVAHVSPLKFGLPMAGVMLTVHVALPTHPGAAAAAGILHSDVGWLMLAGIGVSVVVGIVgyfvA 197
                    *********************************************************************************988887777744435 PP

  GntP_permease 190 gpllkk.flkevvkeeee...laeeaeeksreekelPsfglsl.ltillPvvlmlvktiaelllpkesaalevvefiGnpvvalliallvaiytlg 280
                      + ++ +  ++   e++    + +++ + ++++  P  +l++  +i++P++l++  t+++ ll  e+a+++++++iG p valli+l +a +tlg
     CTQ28051.1 198 RFINRRhYHLSINVLEQQqtaEVPDLSVNAQQTRLPPPNALVIgGLIVVPIMLIVSGTLCQALLLPENAVRQLMTVIGTPPVALLISLGLASWTLG 293
                    55555553333333333322333445555555555555555552589************************************************* PP

  GntP_permease 281 lrrgksikkvldileealksiaiilliigaGGafkqvlvdsgvgkalaellsnlelspillaflvaallrialGsatVaaltaaglvapiiaqlpg 376
                    +rr +s+kk+ +++++a+ s a ++l+ gaGGaf+ vlv sg+g+alae+l++++l+++ +afl++++lr+++GsatVa+lt++gl++ ++  l+ 
     CTQ28051.1 294 IRRRMSLKKLGEVTGSAIPSSADVILVAGAGGAFGGVLVASGIGNALAEALETIHLPLMPAAFLLSLVLRASQGSATVAILTTSGLLSQAVVGLEP 389
                    ************************************************************************************************ PP

  GntP_permease 377 vnlallvlaigaGslilshvnDagFWlvkeylgltvketlktwtvletilsvvgliivlll 437
                     +l+l++la+++Gsl lshvnDagFW+v++ylgl+v + lktwtvl+ti++v+g++i++ll
     CTQ28051.1 390 LQLVLVTLATCFGSLGLSHVNDAGFWVVTRYLGLSVPDGLKTWTVLTTIMGVTGFLITWLL 450
                    **********************************************************976 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6  46.5   1.6e-17   7.4e-14       2     298 ..      18     398 ..      16     400 .. 0.62

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.6e-17
                 xxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS   2 vllileklrldvvallvlvll............vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrdllvllvlltallsaf 88 
                 +ll++++++ ++vall+++ll            ++tie+ + g+   i+ +++++ ++g ++e +G++++la++l  + g kr+ +++l +++++l+  
  CTQ28051.1  18 LLLVIKAKAHPFVALLIVSLLvafatgipadkiITTIEKGMGGLLGHIASIIILGSMLGVLIEMSGGAESLAKTLTGVLGAKRT-IAALTIVAFILGTP 115
                 67777775666666655555555666******9999999*******************************************99.***********999 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  89 vsndgvvlimipivlslakrlkklppl.lliplalaaniggaltpiGtpttraa................arpglslpnllllalllvgllplvllfmf 170
                 v + + ++i+ip++    k  +  +pl +    +l+++   +++++  pt+++a                a        ++ + +++ ++ ++v  f++
  CTQ28051.1 116 VFFEVGFIIIIPLIYGFSKV-AHVSPLkF----GLPMAGVMLTVHVALPTHPGAaaaagilhsdvgwlmlA--------GIGVSVVVGIVGYFVARFIN 201
                 988****************6.77777746....555555555889999*****99**9***9555555553........44444444445555555555 PP

                 xxxxxxxxxxx...................................................................................xxxxx RF
      CitMHS 171 gvalalpvnap...................................................................................kvkkq 186
                  + ++l +n+                                                                                    +  + 
  CTQ28051.1 202 RRHYHLSINVLeqqqtaevpdlsvnaqqtrlpppnalvigglivvpimlivsgtlcqalllpenavrqlmtvigtppvallislglaswtlgirRRMSL 300
                 555555555542222222222222222222222222222222222222222211222222212233444444444444444444444444444433333 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 187 kaiieaiarsllpvatilllaykkveWsvlllfaGvfllvgaleqtGilealadllga.ggplvalalvlgliallsafisnvavaalmapialgmapa 284
                 k++ e   +++              + +v+l +++ + ++g+l ++Gi++ala++l++   pl+   ++++l+ +l+a +++++va+l++ ++l+ a +
  CTQ28051.1 301 KKLGEVTGSAIP------------SSADVILVAGAGGAFGGVLVASGIGNALAEALETiHLPLM--PAAFLLSLVLRASQGSATVAILTTSGLLSQAVV 385
                 333333333333............3344444555555669****************65543433..244555555********************6664 PP

                 xxxxxxxxxxxxxx RF
      CitMHS 285 lgllspsplalala 298
                  gl +++ ++++la
  CTQ28051.1 386 -GLEPLQLVLVTLA 398
                 .6345555555555 PP

>> UPF0767  UPF0767 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.4e-05      0.33      20      51 ..     185     216 ..     171     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.4e-05
     UPF0767  20 vaavvGviGynlEsllsdkytpyeksisekRe 51 
                 v++vvG++Gy + ++++ ++   +  + e+ +
  CTQ28051.1 185 VSVVVGIVGYFVARFINRRHYHLSINVLEQQQ 216
                 89***************999887777777655 PP

>> Na_H_antiport_2  Na+-H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  12.1   0.00052       2.3       6      86 ..      12      95 ..       8      97 .. 0.81
   2 ?    9.2   2.7   0.00028       1.3       9      83 ..     270     344 ..     266     348 .. 0.92
   3 ?   -2.4   0.2       1.2   5.3e+03      46      55 ..     374     384 ..     354     408 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00052
  Na_H_antiport_2  6 avlvmlvLsllr..vnvvlallisalvgGlvgglsleetieafasGlgggaevAlsyallGa.fAvaisksgltdllvkkvikl 86
                     a +v+l+L +++  ++  +alli +l+  + +g++ +++i+++++G+gg      s ++lG+ + v i  sg ++ l+k+++ +
       CTQ28051.1 12 ASVVLLLLLVIKakAHPFVALLIVSLLVAFATGIPADKIITTIEKGMGGLLGHIASIIILGSmLGVLIEMSGGAESLAKTLTGV 95
                     445555555554348999**999999999********************998777999999835799999**999999998866 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00028
  Na_H_antiport_2   9 vmlvLsllrvnvvlallisalvgGlvgglsleetieafasGlgggaevAlsyallGafAvaisksgltdllvkkv 83 
                      +m+v+    v ++++l +++ + G+   +sl++  e+  s + ++a+v l     Gaf  ++  sg+ ++l++++
       CTQ28051.1 270 LMTVIGTPPVALLISLGLASWTLGIRRRMSLKKLGEVTGSAIPSSADVILVAGAGGAFGGVLVASGIGNALAEAL 344
                      5677777778999**********************************************************9987 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.2
  Na_H_antiport_2  46 fa.sGlgggae 55 
                      ++ sGl ++a 
       CTQ28051.1 374 LTtSGLLSQAV 384
                      22223333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3247.85
//
Query:       CTQ28052.1  [L=260]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.4e-37  126.7   0.2    9.9e-37  126.4   0.2    1.1  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.2   5.5e-41   9.9e-37       1     210 []      21     219 ..      21     219 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 5.5e-41
                   HHHHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS...HHHHHHHHHHHHHHHHHHTBSEEEEEBCCG CS
  AP_endonuc_2   1 laaaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederear...reesvdalkraielaaaLGapllvlhpGta 94 
                   +aaaa+aGf++vE+ +++ + +         e+r++l+e+ l+++++++++++ + +e  ++a    ++e++++++ a+e+a +LG+p++++++G  
    CTQ28052.1  21 FAAAARAGFEAVEFLFPYEYAAG--------EIRQRLQENQLQLVLFNTPPGDVNAGEWGLAAIpgrSAEARRDIELALEYACQLGCPQVHIMAG-- 107
                   689*******************6........9**************************9666668888899************************.. PP

                   BCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC.....HHHHHHHHHHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGGEEEE CS
  AP_endonuc_2  95 gagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd.....eelarlldavdspnvgvclDtgHlliaeedvddalraladrikhv 186
                     +p+ +++++ + l+++l+ +a+ +++++ ++++E l++++  +g+      ++++++++vd+pn+ v+lD +H++   +++ +++ ++a  ++h+
    CTQ28052.1 108 VVPPGADRAACEAVLIDNLRYAAECFARHDKRILIEALNPQTK-PGYlyhsqYQTLAMVKRVDRPNLAVQLDLFHAQKVDGNLSHLITEYAGQYRHI 203
                   9*****************************************5.7777************************************************* PP

                   EE.EESSTTTTSSTTEESTTSSSS CS
  AP_endonuc_2 187 HikDakgdlgagrdrhvpigeGei 210
                   +i        a+ +++++++eGei
    CTQ28052.1 204 QI--------ASLPDRHEPDEGEI 219
                   **........899*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1933.80
//
Query:       CTQ28053.1  [L=206]
Description: putative class II aldolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-41  142.4   0.0    1.7e-41  142.2   0.0    1.0  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2   0.0   9.3e-46   1.7e-41       1     184 [.       8     185 ..       8     187 .. 0.92

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 9.3e-46
                  HHHHHHHHHHHHTTSSCTTBCEEEEEETSTTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEECECSSSTB-TTHHHHHHHHHH-TT-SEEEEE--HHH CS
  Aldolase_II   1 eelaeasrllarrglvegtgGniSvrvpeedsflitpsgvdfeeltaedlvvvdldsgevvegkekggkpssetplHlaiykarpdaravvHtHspaa 98 
                  ee+++++  l+ rg+++g +Gn+S+ +p ++++l tp+g  ++el+a+ l vv l+ ge ++g     kps+e+++H+a+y ++p ++a+vH+Hs+++
   CTQ28053.1   8 EEMVQIGASLFSRGYATGSAGNLSLLLP-DGNLLATPTGACLGELQAQRLSVVTLQ-GEWISG----DKPSKEVTFHRAVYLHNPACKAIVHLHSHYL 99 
                  589*************************.9*************************9.****55....58***************************** PP

                  HHHHTCC...STSCHCCSSHHHHC.HSSSEEEEES-SSTTCHHHHHHHHHHHHHS-SEEEETTTEEEEEESSHHHHHHHHHHHHHHHHH CS
  Aldolase_II  99 valsala...gkeglppltqeaaklllgdevpvipyaapgteelgealaealkedakavllrnHGlltvGetleeAvalaetleeaaei 184
                  +als+l+    ++ ++p+t++  +++  ++vpv+py++pg+++++ ala       +a ll+nHG++++G +l+eA +++e+lee+a++
   CTQ28053.1 100 TALSCLQgldPHNCIRPFTPYVVMRV--GDVPVVPYYRPGDDRIALALAGLA-PRYNAFLLANHGPVVTGSSLREATNNTEELEETARL 185
                  ****9877774556777999999865..88**************88888855.5778*****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1598.91
//
Query:       CTQ28054.1  [L=421]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-65  220.4   0.1    6.7e-65  219.0   0.0    1.7  2  SBD_N     Sugar-binding N-terminal domain
    2.4e-38  132.3   0.1    4.3e-38  131.5   0.1    1.4  1  NBD_C     Nucleotide-binding C-terminal domain
  ------ inclusion threshold ------
      0.084   12.8   0.3       0.77    9.7   0.2    2.6  2  YAcAr     YspA, cpYpsA-related SLOG family


Domain annotation for each model (and alignments):
>> SBD_N  Sugar-binding N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.0   0.0   1.1e-68   6.7e-65       1     226 [.       3     226 ..       3     228 .. 0.93
   2 ?   -1.4   0.1      0.26   1.6e+03     191     209 ..     329     347 ..     263     364 .. 0.60

  Alignments for each domain:
  == domain 1  score: 219.0 bits;  conditional E-value: 1.1e-68
                 EEEEESSHHHHHHHHHHHHCTT--EEEEC..SGGC-....G-SSEEEEE---TTS-HHHHHHHHHHHHHHHHHTT.-SEEEE..TC--TTTTSTHHHHH CS
       SBD_N   1 lvviaDDlTGaqdvaaqlakhglrtllll..eaeae....eeadavviatnsRalppeeaaarvrealkalkaagaaklsykvvSrfDStlrGnigaev 93 
                 l+viaDD+TGa+d+a++l+++g+ t++l      ++    + ++avvi++++R++p+e a++++ +al++l+a+g++++++k++S+fDSt +Gnig+++
  CTQ28054.1   3 LGVIADDFTGATDIASFLVRNGMPTVQLNgvP--TRdlplT-SEAVVISLKTRSCPAEMAVSQSLAALRWLQAQGCQQFYFKYCSTFDSTAQGNIGPVL 98 
                 68*************************97442..3345744.679****************************************************** PP

                 HHHHHHH-....EEEE--BGGGTEEEETTEEEETTEEGGGSGGGC-SSS----SBHHHHHHCC-SSEEEEE-HHHHTTTCHHHHHHHHHHHHCTECEEE CS
       SBD_N  94 daladallgp..aivvPafpeggRttvdgvlfvegvpleetefardpltpmkesdLrdlleeqtkekvglidletlaegaealaealeallaegervvv 190
                 dal+++l g+  +++ Pa+p +gRt+++g+lfv+ ++l+e+ ++++p+tpm++++L +l+e+q + k++li +  +a+g+ea+a+al+a+ +  +r+vv
  CTQ28054.1  99 DALLAEL-GEtrTVISPALPVNGRTVYQGYLFVGEQLLNESGMRHHPVTPMEDAHLGRLIERQGRGKAALIAWPIVARGPEAVAAALAAVNDPAVRYVV 196
                 *******.6445***************************************************************************99999889**** PP

                 E-BSSCHHHHHHHHH.HTT..TTT-SEEEESCHHHH CS
       SBD_N 191 vDavseedlaviaealleaaeagkrfllvgaaglaa 226
                 +Da+se+dl + + a       ++  l+ g++gla 
  CTQ28054.1 197 LDALSEQDLLTQGVA------LREMKLVSGGSGLAI 226
                 ***********9999......445789999999985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.26
                 E-BSSCHHHHHHHHH.HTT CS
       SBD_N 191 vDavseedlaviaeallea 209
                  D +s e ++++ +al++a
  CTQ28054.1 329 GDKASSERVEQLFAALAAA 347
                 3444555555555544422 PP

>> NBD_C  Nucleotide-binding C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.5   0.1   7.3e-42   4.3e-38       1     170 []     254     411 ..     254     411 .. 0.93

  Alignments for each domain:
  == domain 1  score: 131.5 bits;  conditional E-value: 7.3e-42
                 EEEEE--SHHHHHHHHHHCTS.CTSEEEEEEHHHHHSCCTCHHHHHHHHHHHHHCCTCCTSSEEEEEECTGHHHH.HH---HHCCC-HHHHHHHHHHHH CS
       NBD_C   1 lvvvGScspkTtaQlaallkegesvpvleldvealledeesaeaeieraleqaeeallaagkdvlvytsrepedvrdaleslqaelglerageriaaal 99 
                 +v++GScs +T+ Q+aa+++++   p+ ++d  a+++   + e +++ + ++++++  a   ++++y+++ep+++ ++   +qa++g ++++er+++++
  CTQ28054.1 254 VVLSGSCSVMTNSQVAAYRQQA---PARAVDLSACFT---DLESYVRTLTDWVDAQRDA-PLAPMIYATTEPQTL-QR---IQAQYGDKASSERVEQLF 341
                 69****************9873...677********5...57889***********644.99***********99.55...9999999999******** PP

                 HHHHHHHHHCTECEEEEESHHHHHHHHHHCT--EEEEEEEEETTEEEEEESSSSS-EEEEE-TT-S-TTHH CS
       NBD_C 100 aeiarrlvergvrrlviaGGdtssavlkaLgvkgleilgeiapgvplgsaigadglpvvlKgGnvGdedtl 170
                 a++a++l ++g++r+++aGG+tss v++ Lgv++++i++ i+pgvp+++ +  + l ++lK+Gn+Gd +++
  CTQ28054.1 342 AALAAALKAKGFTRFIVAGGETSSIVAQTLGVEAFHIGPTISPGVPWVRDT-RQPLSLALKSGNFGDIQFF 411
                 *******999**************************************998.789************9997 PP

>> YAcAr  YspA, cpYpsA-related SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2   0.00013      0.77      31      56 ..     214     239 ..     176     247 .. 0.79
   2 ?   -0.9   0.0      0.27   1.6e+03      16      39 ..     339     362 ..     311     364 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00013
       YAcAr  31 dmvlvhGgakGaDrlAarWAaergve 56 
                 +m lv+Gg+  a  lA++WA+++g  
  CTQ28054.1 214 EMKLVSGGSGLAIGLARDWAQRHGAR 239
                 799******99999*********976 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.27
       YAcAr  16 liwatLdklhaeapidmvlvhGga 39 
                  ++a+L ++++  +   ++v Gg+
  CTQ28054.1 339 QLFAALAAALKAKGFTRFIVAGGE 362
                 678888776666655788888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3260.42
//
Query:       CTQ28055.1  [L=300]
Description: putative dehydrogenase, with NAD(P)-binding Rossmann-fold domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-36  126.2   3.5    1.9e-36  125.6   3.5    1.2  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    7.5e-35  119.8   0.3    7.5e-35  119.8   0.3    2.2  2  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
    5.1e-05   23.2   0.6     0.0002   21.3   0.6    2.0  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
    0.00049   19.5   0.1    0.00088   18.7   0.1    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.001   19.6   0.3      0.003   18.1   0.1    1.9  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
     0.0092   15.6   0.1       0.25   10.9   0.1    2.3  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
  ------ inclusion threshold ------
      0.015   15.6   0.0      0.034   14.4   0.0    1.7  1  TrkA_N          TrkA-N domain
       0.89    8.6   3.4        1.2    8.1   3.4    1.2  1  GIDA            Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   3.5   8.7e-40   1.9e-36       1     155 [.       6     164 ..       6     166 .. 0.96

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 8.7e-40
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHH.HHHHHCSEEEE-SSSHHHHHHHHHS...HCCC--TT-EEEE-S-- CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesie.elvasldvvitmvkagkavdevieg...llealkkgdilidgsts 92 
                    ++ +iGlG MG+  a+ +l+ag ++ +++ +++++++l+a+gak+a   +  ++a+ld+v+++v + ++v+ +++g   l+++lk+g++++ +st+
     CTQ28055.1   6 NVCVIGLGSMGMGAARACLQAGLNTWGVDINPDNCRALLAAGAKGAGPSAvPFAAELDAVVLLVVNAAQVRGILFGesgLAAHLKPGTVVMVSSTI 101
                    589***************************************9998765559******************************************** PP

                    -HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEEEEE CS
  NAD_binding_2  93 spedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigakvth 155
                    + +d++ +a++l+e +l +ldaPVSGG+ +A++G +++m++Gs++af+r++pvl+a++ kv++
     CTQ28055.1 102 ASADAQAIAEALAEYQLLMLDAPVSGGAVKAAAGDMTVMASGSDAAFARLAPVLDAVAGKVYR 164
                    **********************************************************99984 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.9      0.47   1.1e+03       8      53 ..      96     141 ..      92     152 .. 0.84
   2 !  119.8   0.3   3.3e-38   7.5e-35       1     121 [.     170     289 ..     170     290 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.47
  NAD_binding_11   8 lvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnale 53 
                     +v  +++ +   a++Eal+  + + ld+ +   +++a++g  +++ 
      CTQ28055.1  96 MVSSTIASADAQAIAEALAEYQLLMLDAPVSGGAVKAAAGDMTVMA 141
                     677889999999******9999999999999999999999877764 PP

  == domain 2  score: 119.8 bits;  conditional E-value: 3.3e-38
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvlsrdfdpgFaldlmlKDlglalelareagaplpll 95 
                     G G++vK++++ll+++++a+a+Ea++la++aG+ +e++++v+++++g+s+++en+++ +vl++d+ p++a+d+++KDlgl++++ar++ +plpl+
      CTQ28055.1 170 GLGSTVKIIHQLLAGVHIAVAAEAMALAARAGIPLETMYDVVTHAAGNSWMFENRMQ-HVLDGDYSPKSAVDIFVKDLGLVNDTARALTFPLPLA 263
                     78******************************************************7.7************************************ PP

  NAD_binding_11  96 alaeqlyaaaaaegggdaDhsaivrl 121
                      +a +++ +a+++g g +D+sa++++
      CTQ28055.1 264 TTALNMFTSASNAGFGREDDSAVIKI 289
                     ***********************996 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.6   8.8e-08    0.0002       1      40 [.       6      45 ..       6     117 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.8e-08
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekale 40
                +v viG G mG g a ++++agl++  vdi+++  ++ l+
  CTQ28055.1  6 NVCVIGLGSMGMGAARACLQAGLNTWGVDINPDNCRALLA 45
                699****************************998876655 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   3.9e-07   0.00088      37     146 ..       5     118 ..       2     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.9e-07
                   SEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC..SHHHHHHH-SEEEE-S--STTTTTSB.SHHHH.HCSTTTEEEEESS-G CS
  2-Hacid_dh_C  37 ktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv..sleellaesDivslhlpltpetrhli.naeel.akmkkgailiNtaRG 129
                     v++iGlG++G  +a+ + + g++  ++d ++++ ++  + g++ +  s   + ae D v+l +   ++ r+++ +++ l a++k+g +++  +  
    CTQ28055.1   5 TNVCVIGLGSMGMGAARACLQAGLNTWGVDINPDNCRALLAAGAKGAgpSAVPFAAELDAVVLLVVNAAQVRGILfGESGLaAHLKPGTVVMVSSTI 101
                   689*******************************999777778866644777889***************999753565552689************ PP

                   GGB-HHHHHHHHHTTSC CS
  2-Hacid_dh_C 130 glvdeeaLleaLksgki 146
                   +  d +a++eaL + ++
    CTQ28055.1 102 ASADAQAIAEALAEYQL 118
                   ************98765 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   1.3e-06     0.003       2      78 ..       7      79 ..       6     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.3e-06
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHH CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevl 78
                   +++iG G+mg + a+ +l+ag    + + + + np+  ++l ++   ++ +++   aae   vv+l v  ++v  +l
     CTQ28055.1  7 VCVIGLGSMGMGAARACLQAG---LNTW-GVDINPDNCRALLAAGAKGAGPSAVPFAAELDAVVLLVVNAAQVRGIL 79
                   799******************...9999.8899********999999999977778888888888888888777766 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00011      0.25       2      37 ..       6      41 ..       5      48 .. 0.91
   2 ?    2.3   0.0     0.048   1.1e+02     107     137 ..      85     115 ..      72     126 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
                    EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHH CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvDideekvd 37
                    +++viGlG +G+  a +  ++g +  gvDi+    +
      CTQ28055.1  6 NVCVIGLGSMGMGAARACLQAGLNTWGVDINPDNCR 41
                    79*****************************98765 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.048
                     HHHHHHCEEEEEE-S---TTHHHHCHHHHHH CS
  UDPG_MGDP_dh_N 107 iaealkkgkvvvvkSTvpvgtaeelvkkile 137
                     +a +lk g+vv+v ST++   a+ +++ ++e
      CTQ28055.1  85 LAAHLKPGTVVMVSSTIASADAQAIAEALAE 115
                     6789999**********99888855555444 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.5e-05     0.034       1      42 [.       7      48 ..       7      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
                EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTS CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreegl 42
                + +iGlG +G+  a+   ++g +  ++d ++++++ l + g+
  CTQ28055.1  7 VCVIGLGSMGMGAARACLQAGLNTWGVDINPDNCRALLAAGA 48
                579****************66469***********9988875 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.4   0.00056       1.2       2      72 ..       7      78 ..       6      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00056
                EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEE-T.THHHHHHHHHHHT-SHHHHHHHHEE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLithkldtiaelsCnpsiggi.akgllvrEidalggliikaadkagi 72
                v ViG G  G+ AA a+ ++G+++  +  + d++  l    + g+  ++    +E+da+  l+++aa   gi
  CTQ28055.1  7 VCVIGLGSMGMGAARACLQAGLNTWGVDINPDNCRALLAAGAKGAGpSAVPFAAELDAVVLLVVNAAQVRGI 78
                99***********************************99999986548888999999999999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2356.95
//
Query:       CTQ28056.1  [L=253]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-50  171.2   0.6    2.5e-50  170.5   0.6    1.3  1  DeoRC           DeoR C terminal sensor domain
    4.7e-18   64.7   1.0    1.2e-17   63.3   1.0    1.7  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    1.5e-10   40.8   0.3    2.8e-10   40.0   0.3    1.4  1  HTH_11          HTH domain
    1.1e-05   24.9   0.6    4.5e-05   22.9   0.3    2.1  2  HTH_24          Winged helix-turn-helix DNA-binding
    5.6e-05   23.0   0.4    0.00014   21.7   0.1    1.8  2  MarR            MarR family
    6.2e-05   22.6   0.5    0.00014   21.4   0.5    1.7  1  GntR            Bacterial regulatory proteins, gntR family
    0.00013   21.8   2.2    0.00032   20.5   0.8    2.3  2  MarR_2          MarR family
    0.00018   21.5   0.6      0.001   19.1   0.1    2.3  2  HTH_20          Helix-turn-helix domain
    0.00025   21.3   0.2    0.00066   20.0   0.2    1.7  1  Rrf2            Transcriptional regulator
    0.00034   20.7   0.4    0.00074   19.7   0.1    1.7  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
    0.00049   20.3   0.2    0.00091   19.4   0.2    1.5  1  PaaX            PaaX-like protein
     0.0011   18.4   0.2     0.0017   17.8   0.2    1.3  1  DUF1670         Protein of unknown function (DUF1670)
     0.0023   18.1   0.1     0.0095   16.1   0.1    2.2  2  AbiEi_4         Transcriptional regulator, AbiEi antitoxin
     0.0026   17.6   0.2      0.011   15.5   0.2    2.1  1  HTH_5           Bacterial regulatory protein, arsR family
     0.0069   16.3   0.2      0.017   15.0   0.2    1.6  1  DUF977          Bacterial protein of unknown function (DUF977
     0.0096   15.7   0.1      0.023   14.5   0.1    1.6  1  HTH_23          Homeodomain-like domain
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.029   14.4   0.0    1.5  1  HTH_Mga         M protein trans-acting positive regulator (MG
      0.034   14.0   0.2      0.067   13.1   0.2    1.4  1  TrmB            Sugar-specific transcriptional regulator TrmB
      0.059   13.4   0.3       0.25   11.4   0.3    2.1  1  HTH_Crp_2       Crp-like helix-turn-helix domain
       0.06   13.5   0.0       0.18   12.0   0.0    1.8  1  HTH_28          Helix-turn-helix domain
      0.067   13.0   0.3       0.19   11.6   0.3    1.8  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
       0.13   12.4   0.2       0.66   10.1   0.1    2.2  2  DUF370          Domain of unknown function (DUF370)
        0.2   11.5   0.3        1.8    8.4   0.1    2.7  2  MerR            MerR family regulatory protein
       0.87    9.2   5.3       0.16   11.6   0.4    2.3  3  Sigma70_r4      Sigma-70, region 4


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.5   0.6   3.4e-53   2.5e-50       2     160 .]      75     232 ..      74     232 .. 0.99

  Alignments for each domain:
  == domain 1  score: 170.5 bits;  conditional E-value: 3.4e-53
       DeoRC   2 naeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflga 100
                 ++eeK++I+++Aa++i+++++i+ldaGtTtl+lara+ ++++l+vvTn++++ + L +++++ vi++GG++ ++++s+vg++a ++lr++ +d+af++a
  CTQ28056.1  75 QSEEKQAIGALAASHIAKNSCIYLDAGTTTLALARAILDRNDLQVVTNDFEITQLLIDASQCGVIHTGGTLCRENRSCVGESAARTLRHLAIDTAFISA 173
                 679************************************************************************************************ PP

       DeoRC 101 ngidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitDk 160
                 +g+d+ +g++t+de+++ vk+++ + ++r ill+DssK++++a++  ++l++++++itD+
  CTQ28056.1 174 SGWDS-RGIFTPDENKVTVKETVSQVSARSILLCDSSKYNQVATFMALPLTRFTTIITDR 232
                 ****9.7****************************************************6 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   1.0   1.6e-20   1.2e-17       1      55 [.       6      60 ..       6      61 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 1.6e-20
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsis 55
                R++ il l++q+g +s++el+e lgvS +TiRRD ++Leeqgll+ + GG++++s
  CTQ28056.1  6 RHQRILALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVS 60
                9**************************************************9876 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.3   3.7e-13   2.8e-10       1      53 [.       6      55 ..       6      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 3.7e-13
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrG 53
                R + il l+ e+rg +s++eL e L+vS +t+rrd+ +Lee+g  ++s++g G
  CTQ28056.1  6 RHQRILALV-EQRGAVSINELTEILGVSHMTIRRDVSKLEEQG-LLVSVSG-G 55
                789999999.*********************************.5555555.4 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.3   6.1e-08   4.5e-05       5      47 ..       7      49 ..       5      50 .. 0.95
   2 ?   -0.9   0.0       1.7   1.2e+03      11      26 ..      95     110 ..      94     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 6.1e-08
      HTH_24  5 drkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                + +IL l+++ +  s++eL e lg+S  t++r + +Lee+Gl+
  CTQ28056.1  7 HQRILALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLL 49
                789**************************************96 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.7
      HTH_24  11 lLqknprisqreLAer 26 
                 +++ +++++   LA++
  CTQ28056.1  95 CIYLDAGTTTLALARA 110
                 78889********997 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   1.9e-07   0.00014       7      47 ..       9      49 ..       5      52 .. 0.95
   2 ?   -2.7   0.0         8     6e+03      27      38 ..      96     107 ..      83     109 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.9e-07
                HHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR  7 viLrilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                +iL++++++g+ s+ eL + lgvs +t+ r + +Le++Gl+
  CTQ28056.1  9 RILALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLL 49
                79*************************************97 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 8
                 HTS-HHHHHHHH CS
        MarR  27 lgvskstvtrvl 38 
                 ++++ +t+t +l
  CTQ28056.1  96 IYLDAGTTTLAL 107
                 467888888666 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.5   1.9e-07   0.00014      26      59 ..      21      54 ..       9      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.9e-07
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
        GntR 26 sereLaaefgVsrttvReALrrLeaeglverrqg 59
                s +eL + +gVs++t+R+  ++Le++gl+++ +g
  CTQ28056.1 21 SINELTEILGVSHMTIRRDVSKLEEQGLLVSVSG 54
                789**************************99987 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.8   4.3e-07   0.00032       8      55 ..       8      53 ..       6      64 .. 0.92
   2 ?   -1.1   0.0       2.5   1.9e+03      31      44 ..     232     245 ..     221     248 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.3e-07
                HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrp 55
                 r+La +  r+   ++++el++ lg+s+ ++ r + +L+++GL++ ++
  CTQ28056.1  8 QRILALVEQRGA--VSINELTEILGVSHMTIRRDVSKLEEQGLLVSVS 53
                5899******99..*****************************98765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.5
                 HTSSHHHHHHHHHH CS
      MarR_2  31 lglsksavsrilkr 44 
                  +ls +a+s i + 
  CTQ28056.1 232 RHLSDAAASHIARH 245
                 57888888877765 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   1.3e-06     0.001      14      57 ..       9      52 ..       7      55 .. 0.93
   2 ?   -0.8   0.0       2.3   1.7e+03      21      39 ..      98     115 ..      80     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.3e-06
                HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 14 rilraLaraegltaselaerldlskntlsyHLrvLeeagLvevv 57
                ril++  ++++++ +el e l++s  t+++ + +Lee gL+ +v
  CTQ28056.1  9 RILALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSV 52
                899999**********************************8765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.3
                 TCTTB-HHHHHHHHTS-HH CS
      HTH_20  21 raegltaselaerldlskn 39 
                  ++g t  +la+++ l++n
  CTQ28056.1  98 LDAGTTTLALARAI-LDRN 115
                 48899999999988.6655 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   8.8e-07   0.00066      17      69 ..      11      64 ..       9      72 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 8.8e-07
                HHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT.T-TCEEESS CS
        Rrf2 17 LakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrG.kgGGyrLak 69
                La+ e+++ vs++e+ e  ++s+  +++ ++kL+++gl+ sv G ++   rLa 
  CTQ28056.1 11 LALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGgVRAVSRLAA 64
                788899999*****************************9999862455555555 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   9.9e-07   0.00074      13      53 ..      10      50 ..       8      54 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 9.9e-07
                    HHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 13 IYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyve 53
                    I+ l e+++ v+  +l e+L+vs  ++   ++kLe++G+++
      CTQ28056.1 10 ILALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLV 50
                    788999********************************986 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.2   1.2e-06   0.00091      14      68 ..      13      64 ..      10      66 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.2e-06
        PaaX 14 veprggaiwlgsLirllaelGiseslvRaalsRlakaGwlvrekegrrsfYrLsd 68
                + +++ga+++++L ++   lG+s +++R  +s l+++G+lv+   g r++ rL++
  CTQ28056.1 13 LVEQRGAVSINELTEI---LGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVSRLAA 64
                5567888888887666...7**************************999999876 PP

>> DUF1670  Protein of unknown function (DUF1670)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.2   2.3e-06    0.0017     101     176 ..      15      90 ..       6     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.3e-06
     DUF1670 101 eqealltqsDlalllgvstrtvskqvkeyqeeegivlptrGaikDiGpavsHKkkivrlylkgyettei.arrtnHs 176
                 eq + ++ ++l+ +lgvs+ t++++v+++ ee+g ++   G ++ + +  +   ++v+  l+  e  +i a    H 
  CTQ28056.1  15 EQRGAVSINELTEILGVSHMTIRRDVSKL-EEQGLLVSVSGGVRAVSRLAAEPSHLVKSTLQSEEKQAIgALAASHI 90 
                 6888888999*******************.****************9999999999999999999988833445555 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   1.3e-05    0.0095       1      39 [.       8      50 ..       8      56 .. 0.90
   2 ?   -2.5   0.0       7.8   5.8e+03      10      18 ..     178     186 ..     176     186 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.3e-05
     AbiEi_4  1 erlpelasrqvGlfttrelea.aGispsa....lrrLvrkGwLv 39
                +r+++l+ +q+G ++  el++ +G+s ++    +++L ++G+Lv
  CTQ28056.1  8 QRILALV-EQRGAVSINELTEiLGVSHMTirrdVSKLEEQGLLV 50
                6999999.5559***************99999999999999998 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.8
     AbiEi_4  10 qvGlfttre 18 
                 ++G+ft +e
  CTQ28056.1 178 SRGIFTPDE 186
                 679**9876 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   1.5e-05     0.011       6      45 ..       9      49 ..       8      51 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-05
                HHHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  6 kILklLae.gelcvcelaeelglsqstvShHLkkLreaGLV 45
                +IL l+++ g  ++ el+e+lg+s  t+++  +kL+e+GL+
  CTQ28056.1  9 RILALVEQrGAVSINELTEILGVSHMTIRRDVSKLEEQGLL 49
                588888888889***************************96 PP

>> DUF977  Bacterial protein of unknown function (DUF977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   2.3e-05     0.017      14      56 ..       7      49 ..       4      65 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.3e-05
      DUF977 14 keriiGlvkkneritisdleritGvgrtsvrkylvdvlerGdl 56
                 +ri+ lv +++ + i++l  i+Gv + ++r+ +    e+G l
  CTQ28056.1  7 HQRILALVEQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLL 49
                58******************************88776666544 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   3.1e-05     0.023       5      45 ..       5      47 ..       1      49 [. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.1e-05
      HTH_23  5 reRlrillllae..GlsvreIAreLgvsrrTvyrwlkryreeG 45
                ++++ril l+ +    s+ e  ++Lgvs++T++r +++ +e G
  CTQ28056.1  5 ERHQRILALVEQrgAVSINELTEILGVSHMTIRRDVSKLEEQG 47
                7899**********9******************9777766666 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.9e-05     0.029       4      45 ..       4      44 ..       3      51 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.9e-05
     HTH_Mga  4 ikrklkLlelLteneksltldelakeLglseltlqsdiseLn 45
                i+r +++l+l+ + +++ ++ el + Lg s  t++ d+s+L 
  CTQ28056.1  4 IERHQRILALVEQ-RGAVSINELTEILGVSHMTIRRDVSKLE 44
                789999***9999.*************************997 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2     9e-05     0.067      15      54 ..      11      51 ..       9      63 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9e-05
                HHHH.HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEE CS
        TrmB 15 laLl.klgpatadeiaeelgvprskvYevLrsLedkGlVer 54
                laL+ ++g  +++e+ e+lgv++ ++ + +++Le+ Gl   
  CTQ28056.1 11 LALVeQRGAVSINELTEILGVSHMTIRRDVSKLEEQGLLVS 51
                689988999****************************9655 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00033      0.25      22      57 ..      20      56 ..       6      64 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00033
                HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.E.TEEE CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilseLkreglis.r.grri 57
                ++  el ++lG++  t+ r  s+L+++gl+    g+ +
  CTQ28056.1 20 VSINELTEILGVSHMTIRRDVSKLEEQGLLVsVsGG-V 56
                5778999**********************9864243.4 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00024      0.18       5      41 ..      10      48 ..       8      55 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00024
      HTH_28  5 iiklla.aGh.svreaArelgisrrtvyrWikryeegGi 41
                i+ l+  +G  s++e+ ++lg+s+ t++r ++++ee+G+
  CTQ28056.1 10 ILALVEqRGAvSINELTEILGVSHMTIRRDVSKLEEQGL 48
                66666645657*************************997 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   0.00025      0.19       7      42 .]       9      44 ..       8      44 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
  HTH_AsnC-type  7 kILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   +IL++ ++ +  s  eL e +G+S  t++r v +Le
     CTQ28056.1  9 RILALVEQRGAVSINELTEILGVSHMTIRRDVSKLE 44
                   9*****************************998887 PP

>> DUF370  Domain of unknown function (DUF370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00089      0.66      10      67 ..      20      77 ..      14      80 .. 0.94
   2 ?   -1.2   0.0       3.1   2.3e+03      47      58 ..     199     210 ..     186     212 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00089
      DUF370 10 VnadriiaivspesapikrliqeakeegklidategrktksviitdsghvilSalqpe 67
                V+ +++  i+ ++   i+r +++ +e+g l+ ++ g ++ s +  + +h + S lq+e
  CTQ28056.1 20 VSINELTEILGVSHMTIRRDVSKLEEQGLLVSVSGGVRAVSRLAAEPSHLVKSTLQSE 77
                88899999***********************************************998 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.1
      DUF370  47 ktksviitdsgh 58 
                  ++s++++ds++
  CTQ28056.1 199 SARSILLCDSSK 210
                 579999999875 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0024       1.8       1      18 [.      21      38 ..      21      53 .. 0.80
   2 ?   -0.8   0.0       1.8   1.3e+03      13      19 ..     158     164 ..     157     165 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0024
                EHHHHHHHHTTTHHHHHH CS
        MerR  1 tIgevAeltGvsprtLRy 18
                +I+e+ e++Gvs  t+R+
  CTQ28056.1 21 SINELTEILGVSHMTIRR 38
                7****************6 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.8
                 HHHHHHH CS
        MerR  13 prtLRyY 19 
                 +rtLR++
  CTQ28056.1 158 ARTLRHL 164
                 69***96 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   0.00021      0.16       7      39 ..       5      38 ..       5      43 .. 0.92
   2 ?   -3.2   0.1       8.4   6.3e+03      35      43 ..     193     201 ..     192     203 .. 0.71
   3 ?   -2.2   0.1       4.1     3e+03      33      49 ..     235     251 ..     232     252 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
                HHHHHHHHHHH.TTT--HHHHHHHHTS-HHHHHH CS
  Sigma70_r4  7 ererevlelrf.geglTleEIgerlgiSrerVrq 39
                er++++l l+      +  E+ e+lg+S +++r+
  CTQ28056.1  5 ERHQRILALVEqRGAVSINELTEILGVSHMTIRR 38
                799*******998888*****************7 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.4
                 HHHHHHHHH CS
  Sigma70_r4  35 erVrqiekr 43 
                 e+V+q  +r
  CTQ28056.1 193 ETVSQVSAR 201
                 889987665 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.1
                 -HHHHHHHHHHHHHHHH CS
  Sigma70_r4  33 SrerVrqiekrAlrkLR 49 
                 S  +++ i + A++ LR
  CTQ28056.1 235 SDAAASHIARHACEVLR 251
                 66677889999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2141.69
//
Query:       CTQ28057.1  [L=288]
Description: Beta-lactamase SHV-1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-37  127.6   0.1    5.7e-37  127.3   0.1    1.1  1  Beta-lactamase2  Beta-lactamase enzyme family
      4e-32  111.8   0.5    8.7e-32  110.7   0.5    1.5  1  Beta-lactamase   Beta-lactamase
     0.0029   17.1   0.0      0.004   16.6   0.0    1.2  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   0.1   9.5e-41   5.7e-37       3     200 ..      51     257 ..      49     259 .. 0.92

  Alignments for each domain:
  == domain 1  score: 127.3 bits;  conditional E-value: 9.5e-41
                      TTSEE.EESTTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHHHTSSSTSGGGSTTSEEEHHHHHHHHHHTT-HHHHHHHHHHHT.HH CS
  Beta-lactamase2   3 tgeel.gvnadeefpaaStiKvpillalleavlegklslderltltaedivggsgilqklpgktlslrdlltlmiavSDNtAtnlLidrlg.le 94 
                      +g++l + +ade+fp++St+Kv++  a+l++v++g  +l+ +++++++d+v++s++ +k+  + +++ +l++++i+ SDN A+nlL++ +g + 
       CTQ28057.1  51 SGRTLtAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDNSAANLLLATVGgPA 144
                      566665889************************************************9999*****************************99** PP

                      HHHHHHHHCTHTTSB--SHTTCCH.HHTTSSTTEE-HHHHHHHHHHHHHTTSSHHH...HHHHHHH.T-STTTTTTTTTTTTSEEEEEEEE.ET CS
  Beta-lactamase2  95 avnawlkelglretrlrrklpdle.aadkdkrntttardlarllealargellspe...elleils.nqqfrdrlaaglpegvrvahKtGe.ld 182
                       + a+l++ g + trl+r++ +l+ a + d r+ttt++ +a  l++l + + ls++   +ll+++  +     ++++ lp g+ +a+KtG   +
       CTQ28057.1 145 GLTAFLRQIGDNVTRLDRWETELNeALPGDARDTTTPASMAATLRKLLTSQRLSARsqrQLLQWMVdDRVAGPLIRSVLPAGWFIADKTGAgER 238
                      *******************987776999999***********************999*******997777779******************679 PP

                      TEEEEEEEEEE.TTEEEEE CS
  Beta-lactamase2 183 gvrhdvGivya.dgrpyvv 200
                      g+r+ v+++ + ++   +v
       CTQ28057.1 239 GARGIVALLGPnNKAERIV 257
                      9999999999965555555 PP

>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.5   1.5e-35   8.7e-32      10     326 ..      40     276 ..      34     280 .. 0.89

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 1.5e-35
                     HHTTESEEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSCTTSBG..............GGTSTTCTTGG CS
  Beta-lactamase  10 aqggipGvavavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkldLddpV..............skylPefagpg 90 
                     +   + G+  +++  g+++               ++ad++f+++S++K++ + avl+ v++G  +L +++              +k+l      +
      CTQ28057.1  40 G---RVGMIEMDLASGRTL-------------TAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIhyrqqdlvdyspvsEKHL------A 112
                     4...677777777777777.............39*******************************************99999999999......6 PP

                     GTTEBHHHHHTTHSSCSSSSTSTTCTSHHHTHHHHHHHHHHSBSSSSTTSCEE-SHHHHH.HHHHHHHHHHT.SHHHHHHHHHTTTTTTSTTEES CS
  Beta-lactamase  91 kgkiTlrdLltHtsGlpdlfasdlleeaaadaaellralatlppkyapGtkwgYsntgyg.llgellekvtg.rsleqllreeilrpLgmkdtel 183
                     +g +T+ +L+ +  ++                                     ++n +++ ll+  +++++g + + ++++++++r  ++++tel
      CTQ28057.1 113 DG-MTVGELCAAAITM-------------------------------------SDNSAANlLLAT-VGGPAGlTAFLRQIGDNVTRL-DRWETEL 167
                     66.*************.....................................*******67777.*********************.******* PP

                     STTGGGGGGBEEEEEEETCEEECSCETTHHHHCTTTBEEEEHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEEC CS
  Beta-lactamase 184 gppesgdprdaagytgngpearappanlpaeaegagglistardlarflglalegglllsaetlaqltaklssgttrpagiraglglGwvladkt 278
                     +++ +gd+rd++++                        +s+a++l+++l +     + lsa++++ql ++++  ++++++ir  l+ Gw++adkt
      CTQ28057.1 168 NEALPGDARDTTTP------------------------ASMAATLRKLL-T----SQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKT 233
                     **************........................***********.4....6788999999999*************************** PP

                     CHTEEEEEEE.STEEEEEEEECGGTEEEEEEESBCSSHHHHHHHHHHHH CS
  Beta-lactamase 279 gapgtfghtG.ggygtyvfvdpeanlvvavltnrdppnedaaedarlia 326
                     ga    g  G  g  + ++ +++a+ +v+++  ++p  ++ ae++++ia
      CTQ28057.1 234 GA----GERGaRGIVALLGPNNKAERIVVIYLRDTP--ASMAERNQQIA 276
                     *9....555577788888888888999999999888..78888888776 PP

>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   6.8e-07     0.004      16     144 ..      44     170 ..      33     205 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.8e-07
                    EEEEETTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCSGTTSSTTS-TTT-EEEHHHHHHHHHCC--HHHHHH CS
  Peptidase_S11  16 ailvdantGkvLyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgnnkevsniflkkgskvsvkdLlegllvssgNdAava 111
                    +i +d+++G+ L++  ade+ ++ S  K++    vl  +++g  +++ k+   ++       + vs+  l  g  ++v +L  +++  s+N+Aa  
     CTQ28057.1  44 MIEMDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVD--YSPVSEKHLADG--MTVGELCAAAITMSDNSAANL 135
                    5779**************************99999999999988888887776655444..478999999666..*******************99 PP

                    HHHHHHS..SHHHHHHHHHHHHHHTT-TT-B-SSS CS
  Peptidase_S11 112 lAekiaG..sekaFvkmMnkkakelGlkntkfvnp 144
                    l   ++G  +  aF     + + +l   +t+ +++
     CTQ28057.1 136 LLATVGGpaGLTAFLRQIGDNVTRLDRWETELNEA 170
                    99999984456788887777777776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2420.85
//
Query:       CTQ28058.1  [L=86]
Description: putative K+ transporting ATPase, KdpC subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.053   13.4   0.0      0.061   13.2   0.0    1.1  1  Exonuc_VIII  Enterobacterial exodeoxyribonuclease VIII


Domain annotation for each model (and alignments):
>> Exonuc_VIII  Enterobacterial exodeoxyribonuclease VIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.4e-06     0.061     141     181 ..      33      76 ..      16      83 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.4e-06
  Exonuc_VIII 141 pellvvatqelrirvlaqyiGeekylthv..dalqkke.ilrle 181
                   +  ++++q+l +r+++q i +e+y + v  da q  + + r++
   CTQ28058.1  33 AQYGALSGQPLSYRIVSQTIDDERYFFGVfsDAHQDSDkLTRVA 76 
                  356789**********************9999999764155655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 766.13
//
Query:       CTQ28059.1  [L=362]
Description: putative RecF protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-26   91.8   1.3    1.2e-24   87.7   1.3    2.1  1  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    3.6e-19   69.7   0.0    4.2e-11   43.2   0.0    2.1  2  AAA_15    AAA ATPase domain
    4.4e-13   49.2   0.0    1.4e-08   34.5   0.0    2.1  2  SMC_N     RecF/RecN/SMC N terminal domain
    5.1e-09   36.9   0.0    7.5e-09   36.4   0.0    1.2  1  AAA_23    AAA domain
    4.3e-05   24.0   0.0     0.0009   19.8   0.0    2.3  1  ABC_tran  ABC transporter
  ------ inclusion threshold ------
      0.017   14.7   0.0      0.036   13.7   0.0    1.5  1  AAA_25    AAA domain
      0.024   14.2   0.0      0.051   13.2   0.0    1.5  2  AAA_27    AAA domain
       0.03   13.6   0.2      0.052   12.8   0.0    1.4  2  DUF2813   Protein of unknown function (DUF2813)
      0.076   12.8   0.0       0.14   11.9   0.0    1.4  1  AAA_29    P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   1.3   6.2e-28   1.2e-24       1     301 [.      23     336 ..      23     338 .. 0.82

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 6.2e-28
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv......eeklssvetl 93 
                 ln++ GpNg+GKSn+  a+ ll   +++++ ++ ++  gg + +++s  ++  ++ p +++i    +++ +y+  + + ++         +++   e+ 
  CTQ28059.1  23 LNIVFGPNGCGKSNIYNAIHLLTA-AAEGRLSGFISEEGGLENMMWSGERSPLDRHPRRLQIA-CRTDSFDYELQIGFPEKLPyptqfmLDPIVKEENI 119
                 79********************98.99999999999999999999999999999999999999.99999999999999999999998888888888888 PP

      AAA_21  94 lesgllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrsl 192
                 ++ g+ ++++s+          r + +   v +  e+s   ++++++++++  +++++++++ +     ++r+++++ fa   + + +++ ++ +++ l
  CTQ28059.1 120 WLAGYSRRPSSRVLQ-------RKNQAAFLVDVTGEKSTFTESIYENESVFGQLGEPHRFPEVSRVRETLRRWRFYHEFAIGRHSPLRQPAVGYRSPVL 211
                 888888888887654.......3333333333444444444444444444444444444444444443444**************************** PP

      AAA_21 193 klveielsdlgegeeliasvderlrer..........................gvvflengdgqelparelSdGtkrllalltallralkkgsllliDE 265
                 + ++ +l +    +++i         +                           +    +g +++l a+e+SdGt+r+l+l++all+ +++ ++l+i E
  CTQ28059.1 212 DSDGQNLAAAFQTIVEIG--------AeeilheiladafpgcqfycenehsrfALKMRREGIRRPLLAAEMSDGTLRFLCLAVALLSPRPP-AFLAINE 301
                 ***999988865444443........13344446778**************99999999999*****************************.******* PP

      AAA_21 266 pEngLHPkllrrllellkelsrngaQviltTHSpll 301
                 pEn+LH  +l+ l++l+ e+sr  +Q+ lt+HS +l
  CTQ28059.1 302 PENSLHRDMLPALARLIIEASR-YSQIWLTSHSAEL 336
                 **********************.**********998 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   2.1e-14   4.2e-11       1      47 [.       1      45 [.       1      71 [. 0.93
   2 !   24.6   0.0   9.3e-09   1.9e-05     322     367 ..     292     335 ..     266     337 .. 0.83

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 2.1e-14
      AAA_15  1 MkIkkikikNFRslkdveidlseeltvliGkNnsGKSsilealdlFl 47
                M I+ i+i+NFRs kd+ ++l + l+++ G+N++GKS+i +a+ l+ 
  CTQ28059.1  1 M-IQYIRIQNFRSVKDIALELGP-LNIVFGPNGCGKSNIYNAIHLLT 45
                7.9********************.*******************9886 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 9.3e-09
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHSph 367
                  ++++l+i EPE++LH ++   l++l++e+++ +  Q+ +t+HS  
  CTQ28059.1 292 RPPAFLAINEPENSLHRDMLPALARLIIEASRYS--QIWLTSHSAE 335
                 3679******************************..********76 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   6.9e-12   1.4e-08       1      50 [.       1      46 [.       1      60 [. 0.89
   2 !   13.0   0.0   2.6e-05     0.052     136     203 ..     273     338 ..     106     345 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 6.9e-12
                EEEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  1 vlkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGe 50
                +++ ++i+nF+s   k + l++ + ++++ GpNG+GKsn+ +Ai ++L  
  CTQ28059.1  1 MIQYIRIQNFRSV--KDIALELGP-LNIVFGPNGCGKSNIYNAI-HLLTA 46
                5889*********..79*****99.*******************.77765 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.6e-05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemle 203
                 ++S G  tL  l L +A+ + +p ++  + e +  L      ++a+l+ e+s  +Q+  +s+++e+ e
  CTQ28059.1 273 EMSDG--TLRFLCLAVALLSPRPPAFLAINEPENSLHRDMLPALARLIIEASRYSQIWLTSHSAELAE 338
                 67777..5667778889*********************************************999876 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   3.8e-12   7.5e-09       2      44 ..       5      46 ..       4      74 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 3.8e-12
      AAA_23  2 LkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLy 44
                ++i+nfrs +d  ++++ +l++++GpNG+GK+ i +Ai+l + 
  CTQ28059.1  5 IRIQNFRSVKDIALELG-PLNIVFGPNGCGKSNIYNAIHLLTA 46
                89***************.********************99765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.5e-07    0.0009       8      43 ..      18      97 ..      13     304 .. 0.56

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.5e-07
                EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE............................................E CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................x RF
    ABC_tran  8 lkegekvaivGenGaGKStLlkllagllkpteGei............................................l 43
                l+ g +  ++G+nG+GKS + +++  l+  +eG++                                             
  CTQ28059.1 18 LELGPLNIVFGPNGCGKSNIYNAIHLLTAAAEGRLsgfiseegglenmmwsgerspldrhprrlqiacrtdsfdyelqiG 97
                6677788899***********************99666666666666555555555555555555555555555555550 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.8e-05     0.036      30     104 ..      18      95 ..       9     118 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
      AAA_25  30 lpagelallaGapgtGKttl..aldlalavatGkpwlg.pvapeqgkVlyvsaEds.edelrrRlravgealrddarll 104
                 l +g l++++G+ g+GK+ +  a++l  a a+G+ + g + +      +++s+E s  d+ +rRl+ ++++ ++d +l+
  CTQ28059.1  18 LELGPLNIVFGPNGCGKSNIynAIHLLTAAAEGR-LSGfISEEGGLENMMWSGERSpLDRHPRRLQIACRTDSFDYELQ 95 
                 5678899***********7755999*********.6687555688899******9977899999999997655555555 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.6e-05     0.051       4      49 ..       3      44 ..       1      52 [. 0.85
   2 ?   -3.3   0.0       2.8   5.5e+03      74     126 ..     142     194 ..     139     201 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.6e-05
      AAA_27  4 erLdLeryGkftdrsldfsaeeadlhliyGpNEAGKstalrAisdl 49
                + ++++ + +++d  l+++     l +++GpN  GKs + +Ai+ l
  CTQ28059.1  3 QYIRIQNFRSVKDIALELG----PLNIVFGPNGCGKSNIYNAIHLL 44
                6667778888888888888....7******************9865 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.8
      AAA_27  74 leeadgeelefaRrkgrkktlldaddqalpeevlaallggldretFealFgLd 126
                 l + +ge+ +f+    ++++++++ +++     ++++ + l r +F + F++ 
  CTQ28059.1 142 LVDVTGEKSTFTESIYENESVFGQLGEPHRFPEVSRVRETLRRWRFYHEFAIG 194
                 55666666677777777777777777777777778888888888888888875 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.6e-05     0.052       4      47 ..       3      46 ..       1      58 [. 0.89
   2 ?   -3.5   0.0       2.3   4.5e+03     287     306 ..     297     316 ..     294     336 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.6e-05
     DUF2813  4 erieisGFRGinrLSlsleentvLiGENaWGKSSLldALsliln 47
                + i i+ FR ++ + l+l +++++ G N  GKS + +A+ l+ +
  CTQ28059.1  3 QYIRIQNFRSVKDIALELGPLNIVFGPNGCGKSNIYNAIHLLTA 46
                67999*********************************998765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.3
     DUF2813 287 lllEdpearLHPtmlaiaWe 306
                 l + +pe+ LH  ml  + +
  CTQ28059.1 297 LAINEPENSLHRDMLPALAR 316
                 56789999999888866554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.2e-05      0.14      12      47 ..      10      46 ..       2      52 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.2e-05
      AAA_29 12 fdg.htieidlkgatlltGpsGsGKSTllDAiqalLv 47
                f+  ++i ++l    ++ Gp+G GKS +  Ai  l  
  CTQ28059.1 10 FRSvKDIALELGPLNIVFGPNGCGKSNIYNAIHLLTA 46
                44445566664457899************99987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 2998.59
//
Query:       CTQ28060.1  [L=421]
Description: lactose/galactose transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.8e-206  684.7  29.8   4.6e-206  684.4  29.8    1.0  1  LacY_symp       LacY proton/sugar symporter
    7.4e-23   81.0  47.0    2.1e-22   79.5  42.3    2.0  2  MFS_1           Major Facilitator Superfamily
    3.5e-20   72.2  30.8    3.4e-19   69.0  30.5    2.1  1  MFS_1_like      MFS_1 like family
  ------ inclusion threshold ------
        1.8    8.6   4.4         25    4.8   0.1    2.9  2  Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis 


Domain annotation for each model (and alignments):
>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  684.4  29.8    1e-209  4.6e-206       2     404 ..       7     409 ..       6     416 .. 0.99

  Alignments for each domain:
  == domain 1  score: 684.4 bits;  conditional E-value: 1e-209
   LacY_symp   2 iplkntnfylfalffffyffimsayfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllvlfapfliyvfepllq 100
                 +p++++nf++f lffffy+fimsayfp+fpvwl++v++l+ktetGivfs islf+i+fqp+fGl+sdklGl+k+llw+i++ll+lfapf+i+vf+pllq
  CTQ28060.1   7 APRERHNFVYFLLFFFFYYFIMSAYFPFFPVWLADVNHLTKTETGIVFSSISLFAIIFQPVFGLMSDKLGLRKHLLWTITVLLILFAPFFIFVFSPLLQ 105
                 57899********************************************************************************************** PP

   LacY_symp 101 lnilvGalvGgvflGlvysagagaieayiekvsraskfeyGkarvfGclGyalcaslaGilfsidpslvfwlasgfalilllllllskpdksssakvad 199
                 +ni++G+lvGg++lG+v+s+g+ga+eayie+vsra++feyGk+rv Gc+G+alcas++G+lf idp+++fw+asgfal+l lll+ls+p++s+sa+v++
  CTQ28060.1 106 MNIIAGSLVGGIYLGIVFSSGSGAVEAYIERVSRANRFEYGKVRVAGCVGWALCASITGVLFGIDPNITFWIASGFALVLGLLLWLSRPESSNSAQVIE 204
                 *************************************************************************************************** PP

   LacY_symp 200 alGankeafslrlalelfkdrklwvfvlyvvGvasvydvfdqqfavffkslfespeaGtrvfGyvttagellnalimfiaplivnriGaknalliagvi 298
                 alGan++afslr+a+el++++++w f++yvvGvasvydvfdqqfa+ffks+f+sp++Gt+vfG+vtt gellnalimf+ap+ivnriGaknall ag+i
  CTQ28060.1 205 ALGANRQAFSLRTAAELLRMPRFWGFIVYVVGVASVYDVFDQQFANFFKSFFASPQRGTEVFGFVTTGGELLNALIMFCAPAIVNRIGAKNALLTAGMI 303
                 *************************************************************************************************** PP

   LacY_symp 299 msvrilgsafattalevvilkllhalevplllvgvfkyitsafdkrlsatifligfqlskqlaivllstlaGklydkvGfqtaylvlgiivlsltlisv 397
                 msvrilgs+fa +a+evvilk+lh++e+p+llvg+fkyi+saf+ rlsat+fligf+lskql+ v+ls+++G++yd+vGf++ayl+lg+i+ls+tl+s 
  CTQ28060.1 304 MSVRILGSSFASSAVEVVILKMLHMFEIPFLLVGTFKYISSAFNPRLSATLFLIGFNLSKQLSGVVLSAWVGRMYDTVGFHQAYLILGCITLSFTLLSF 402
                 *************************************************************************************************** PP

   LacY_symp 398 ftlsksk 404
                  tl++ +
  CTQ28060.1 403 VTLRGGN 409
                 ***9866 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5  42.3   4.7e-26   2.1e-22       2     312 ..      18     338 ..      17     373 .. 0.82
   2 ?    2.2   4.0     0.015        67     128     173 ..     361     404 ..     325     420 .. 0.51

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 4.7e-26
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfa.sslw.l.llvlrvlqG 96 
                 ll +f++++ +s+++p++p +la+  +++++e g++++  +l+a+++++++G +sd++G r+ +l++  +l++l++ +++f+ s+l  + ++++ ++ G
  CTQ28060.1  18 LLFFFFYYFIMSAYFPFFPVWLADVNHLTKTETGIVFSSISLFAIIFQPVFGLMSDKLGLRKhLLWTITVLLILFAPFFIFVfSPLLqMnIIAGSLVGG 116
                 6889*******************************************************9998999999999999444444458888777889999999 PP

       MFS_1  97 lgagalfpagaaliadwfpkeergrai..gllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgp 193
                 +  g++f++g  ++ ++  +  r+  +  g + ++  +G +l + + g+l   +    +f+i+ +++l++++l  l+l +++++++ +  + +++ ++ 
  CTQ28060.1 117 IYLGIVFSSGSGAVEAYIERVSRANRFeyGKVRVAGCVGWALCASITGVLF-GIDPNITFWIASGFALVLGLL--LWLSRPESSNSAQVIEALGANRQA 212
                 999*****************999988778**********************.788*****************9..999999999999998888766666 PP

       MFS_1 194 aplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalg 290
                 ++l++   +ll+ p +w +++ +++++ ++  + + +  ++++ +  +  g    g++   + l++a ++++a ++++r+g++++ll a+ ++++  lg
  CTQ28060.1 213 FSLRT-AAELLRMPRFWGFIVYVVGVASVYDVFDQQFANFFKSFFASPqrGTEVFGFVTTGGELLNALIMFCAPAIVNRIGAKNALLTAGMIMSVRILG 310
                 66666.889999999**7777777777788887777777768888888887788888899999999999****************************** PP

       MFS_1 291 lallavtssavllll......vlvliGf 312
                   +++ + + v+l +      +++l+G+
  CTQ28060.1 311 SSFASSAVEVVILKMlhmfeiPFLLVGT 338
                 *******666555553333443333332 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.015
       MFS_1 128 agfslGailgpllggllasslgWravfyilaivsllafvlfllllp 173
                 ++ +l+ ++  +  g +++ +g++ +++il+ ++l + +l   +++
  CTQ28060.1 361 LSKQLSGVVLSAWVGRMYDTVGFHQAYLILGCITLSFTLL--SFVT 404
                 2222333333333333455666777777777777777665..3333 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0  30.5   7.5e-23   3.4e-19       6     377 ..      19     381 ..      15     389 .. 0.78

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 7.5e-23
  MFS_1_like   6 ilyFfffaalgsllPYltiylks.kglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklevsvaq 103
                 +++Ff++ ++++ +P++ ++l +   l+  e gi+ + + l++i+ +p++g ++D++g rk ++   ++l +++   ++f+        ++ l+++   
  CTQ28060.1  19 LFFFFYYFIMSAYFPFFPVWLADvNHLTKTETGIVFSSISLFAIIFQPVFGLMSDKLGLRKHLLWTITVLLILFAPFFIFVF-------SPLLQMN--- 107
                 699******************96257************************************98776666655544334433.......4444433... PP

  MFS_1_like 104 dvdaektfwilfllvvlasfflaailvlldaatlkelgedrkdyGrqrlfGsvGyaifafitGilidhysvnllp..ysallyvlaallvisllvvlil 200
                       +++  ++  +   ++ ++    ++a + +  + +r +yG++r+ G vG+a+ a itG+l+      +       +l++ ++l++    ++ + 
  CTQ28060.1 108 ------IIAGSLVGGIYLGIVFSSGSGAVEAYIERVSRANRFEYGKVRVAGCVGWALCASITGVLFGIDPNITFWiaSGFALVLGLLLWLSRPESSNSA 200
                 ......3333333333333344444444555544445888999***********************986553323332224444455566666666677 PP

  MFS_1_like 201 netekesklkvtkslqvllnilknpeviifllval....ilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvkllii 295
                 +  e+  +   + sl+   ++l++p+ ++f++ ++    +  ++   + nF++ ++ + +  +++ G +++ g +++  + f a  +++++G+ + l++
  CTQ28060.1 201 QVIEALGANRQAFSLRTAAELLRMPRFWGFIVYVVgvasVYDVFDQQFANFFKSFFASPQRGTEVFGFVTTGGELLNALIMFCAPAIVNRIGAKNALLT 299
                 7777777777777779**************99654222278888888999999999999999************************************* PP

  MFS_1_like 296 allayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlk 377
                 a +++ +r l+ ++ ++a+ v+++ +Lh + +  l +   +y+s ++ ++l at+  +   l+  l + + s   G ++d+ 
  CTQ28060.1 300 AGMIMSVRILGSSFASSAVEVVILKMLHMFEIPFLLVGTFKYISSAFNPRLSATLFLIGFNLSKQLSGVVLSAWVGRMYDTV 381
                 *****************************************************99776666655555554444444666655 PP

>> Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   1.2     0.014        63       3      45 ..      83     125 ..      81     149 .. 0.50
   2 ?    4.8   0.1    0.0057        25       4      52 ..     156     202 ..     152     223 .. 0.61

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.014
  Halogen_Hydrol   3 gwllsiliavivalvsffllgfsfflalliailggilvyvasr 45 
                     +++ + li++  +++++f+   ++ ++++ +++g++l +v+s+
      CTQ28060.1  83 WTITVLLILFAPFFIFVFSPLLQMNIIAGSLVGGIYLGIVFSS 125
                     4544444444444444444444444443344666666666655 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0057
  Halogen_Hydrol   4 wllsiliavivalvsffllgfsfflalliailggilvyvasr.knkkkkh 52 
                     w+l    a i+++++ +  +++f++a+++a++ g+l+++    +  + + 
      CTQ28060.1 156 WALC---ASITGVLFGIDPNITFWIASGFALVLGLLLWLSRPeSSNSAQV 202
                     4444...4455577778899******999955555555444414444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       898  (0.0500865); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.36
# Mc/sec: 3477.40
//
Query:       CTQ28061.1  [L=1035]
Description: beta-D-galactosidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-112  375.6   0.0     2e-112  375.2   0.0    1.1  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom
      1e-57  194.7   0.2    2.6e-57  193.4   0.1    1.7  2  Glyco_hydro_2_N  Glycosyl hydrolases family 2, sugar binding 
    1.6e-57  194.9   0.0    2.6e-57  194.2   0.0    1.3  1  Bgal_small_N     Beta galactosidase small chain
    1.5e-16   60.7   0.0    4.3e-16   59.2   0.0    1.9  1  DUF4981          Domain of unknown function(DUF4981)
    9.5e-11   42.3   0.0    1.9e-10   41.4   0.0    1.5  1  Glyco_hydro_2    Glycosyl hydrolases family 2


Domain annotation for each model (and alignments):
>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.2   0.0  5.6e-116    2e-112       1     301 [.     343     636 ..     343     637 .. 0.97

  Alignments for each domain:
  == domain 1  score: 375.2 bits;  conditional E-value: 5.6e-116
                      EEEETTEEEETTEEE-EEEEEE-S-BTTTBTS--HHHHHHHHHHHHHCT--EEEETTS--SHHHHHHHHHHT-EEEEE-S-B-TTSCCCCSHCT CS
  Glyco_hydro_2_C   1 vevkdkllliNgkrllfkGvnrHedadrrGraideellvkDlkllkqlniNavRtsHYPnqeevyelcDeyGlyvidEanlethglaqklgeie 94 
                      +e+ d+ll +Ngk+ll++GvnrHe++++rG++++e ++v+D+ l+kq+n+NavR+sHYPn++++yelc +yGlyv+dEan+ethg++ +++   
       CTQ28061.1 343 IEIADGLLRLNGKPLLIRGVNRHEHHHLRGQVVTEADMVQDILLMKQNNFNAVRCSHYPNAPRWYELCNRYGLYVVDEANIETHGMVPMNR--- 433
                      6899***********************************************************************************9555... PP

                      -CCCCTTTSGGGHHHHHHHHHHHHHHHTT-TTEEEEEEEESSCHHHHHHHHHHHHHHH-TTSEEEEETCSSGGGTSSEEEECCTTTSSSTTCHH CS
  Glyco_hydro_2_C  95 psynvladnpewlkavldrieelverdkNHpsviiWSlgNEsgagedikalaelikklDptRlvhyegvaaareldviildiysrmyekvglle 188
                           l+d+p wl+a+  r++++v+ ++NHp +iiWSlgNEsg g +++al++++k+ Dp+R+v+yeg +a++++++ii+++y+r+  ++++++
       CTQ28061.1 434 -----LSDDPAWLPAFSARVTRMVQSNRNHPCIIIWSLGNESGGGGNHEALYHWLKRNDPSRPVQYEGGGADTTATDIICPMYARVERDQPIPA 522
                      .....89*************************************************************************************** PP

                      H....HHHHHHHCHHHHSS-EEEEEESE-BST--TTHHHHHHCCCH-CCCCCCCCCHCCHHHEEECETTEEEEEECETCTCSBSSBTCCCCSBE CS
  Glyco_hydro_2_C 189 e....lekelenekkklqkPlilcEYghamgnslGglqeytelfkkyeeyQggfiweyidqaiqkrdeavggellayggDfkdeqsdlefignG 278
                      +    ++k+++     +q+PlilcEY+hamgnslG +++y++ f++y+++Qggfiw+++dqai k+  + g+   ayggDf d+++d++f++nG
       CTQ28061.1 523 VpkwgIKKWISLP--GEQRPLILCEYAHAMGNSLGNFADYWQAFREYPRLQGGFIWDWADQAIRKTFAD-GSVGWAYGGDFGDKPNDRQFCMNG 613
                      9998899999885..99**********************************************999999.99999******************* PP

                      SB-TTS-B-HHHHHHHHHCHCEE CS
  Glyco_hydro_2_C 279 lvtadrtpkpalqelkkvyekvk 301
                      lv+ drtp+p+l+e+k+ ++ ++
       CTQ28061.1 614 LVFPDRTPHPSLVEAKHAQQYFQ 636
                      *****************998776 PP

>> Glyco_hydro_2_N  Glycosyl hydrolases family 2, sugar binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.4   0.1   7.2e-61   2.6e-57       2     169 .]      59     225 ..      58     225 .. 0.99
   2 ?   -4.2   0.0       3.9   1.4e+04      31      47 ..     301     319 ..     289     332 .. 0.74

  Alignments for each domain:
  == domain 1  score: 193.4 bits;  conditional E-value: 7.2e-61
                      EE-SEEEEEEEESSGGGSCCCCHCST-TTSEEEECSCEGCGG....SEEESSSTSS.TCTTBHHSS-CEEEEEEEEEE-HHHHHS.EEEEEESE CS
  Glyco_hydro_2_N   2 kslnGeWaFalfdapkgvdesWlesalqesrtiavPsdwelq....piytnveypidvdsadlptvngtgvYartfeidskwaek.kvrllFeg 90 
                      ++l+GeW+F++ + p +vd +Wl  +l+++r   vPs+w+++    piytnv+ypid  ++ +p  n+tg+Y+  f++++ w e+ +++++F+g
       CTQ28061.1  59 RQLDGEWQFSYARSPFAVDAQWLTQDLPDCRGTPVPSNWQMEgydaPIYTNVRYPIDTTPPRVPEDNPTGCYSLHFTVEDTWRENgQTQIIFDG 152
                      589******************************************************************************************* PP

                      EESEEEEEETTEEEEEEE-TTS-EEEEGGGGS-SEEEEEEEEEESTTGGGGGBECTCEESSSEEE--EEESEEEEEEEC CS
  Glyco_hydro_2_N  91 vtsasevwvngqevgkrqgsylpfefDltpylseGknriavkvlkwsdgsyieDeskaltgdlytlsGiyRdvsLlkkP 169
                      v+sa+++w+ng +vg+ q+s+lp+ fDl+p+l+ G+nr+ v+v++ws gs++eD+      d++++sGi+R+v Ll+kP
       CTQ28061.1 153 VNSAFHLWCNGVWVGYSQDSRLPAAFDLSPFLRPGDNRLCVMVMRWSAGSWLEDQ------DMWRMSGIFRSVWLLNKP 225
                      *******************************************************......***************998 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 3.9
                      SEEEECSCEGCGG..SEEE CS
  Glyco_hydro_2_N  31 srtiavPsdwelq..piyt 47 
                      s ++a P +w+ +    y+
       CTQ28061.1 301 SLAVATPAHWSAEtpNCYR 319
                      5578888999887544454 PP

>> Bgal_small_N  Beta galactosidase small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.2   0.0   7.2e-61   2.6e-57       4     241 ..     765    1031 ..     762    1033 .. 0.84

  Alignments for each domain:
  == domain 1  score: 194.2 bits;  conditional E-value: 7.2e-61
                    TEEEEEETTTTCEEEEEETTEE-EEEC.CEE---S--HHH.......HHHTTS.HHHHHHTTCEEEE...EEEECCE..EEEEEEEEEEECCEEC CS
  Bgal_small_N    4 dfsvtfdkktGeltslkyngkellleg.kpnfwRaptdND.......gkkpkk.kakWkkaglleve...eavevee..eeeeevvtveyrlapk 84  
                    +  +t+d++tG l++++++g+e ll++ + +f+Rap+dND         +p++ +++W++agl + e      ++++    +e++v+++ ++ + 
    CTQ28061.1  765 SQCWTIDRRTGLLSRWSVGGQEQLLTPlRDQFIRAPLDNDigvseveRIDPNTwVERWRSAGLYDLEahcV--QCDAqrLANETLVDCRWHYLRG 857 
                    5679******************************************977777779*******743344231..2222222233336666663333 PP

                    .....EEEEEEEEETTCEEEEEEEE.........-SEEEEEEEECTTECEEEEEEEESS--BTTB-SSSEEEEEEECHGHHS---SS--S---EE CS
  Bgal_small_N   85 .....evtvtYtidadgeikvkvvk........elpriGlrlelpkefeqvewyGrGPgEnYpDrktgakvGvYestvddlytpYirPqenGnrt 166 
                           +++ +++adg++++ v +        +lpr+Gl+++++++   v+w+G+GP+EnYpDr+++a + ++e+ ++ + tpYi+P enG r+
    CTQ28061.1  858 eevviVSHWRMHFTADGTLRLAV-DgeraetlpPLPRVGLHFQVADQQAPVSWLGLGPHENYPDRRSSACFARWEQPLAAMTTPYIFPTENGLRC 951 
                    45788778888888888888888.4468999999************************************************************* PP

                    EEEEEEEECTT...TEEEEEESS-HHHHHH-SSGGG-EEE.EEEEEEEEEE----.SCCSS--S-GGGS-C-SEEEEEEE CS
  Bgal_small_N  167 dvrwleltdke...gfsfsalpytteeleeakhpyeLkkr.etvlnldaaqmGvG.ddScgpevleeyrlpakeyefsft 241 
                    d++ l   + +   +f+fs+ p++t++l e++h ++++ +  ++++ld+ +mGvG ddS+ p+vl++++l++++ +++++
    CTQ28061.1  952 DTQALDWGRWHisgHFHFSVQPWSTRQLMETDHWHKMQAEdGVWITLDGLHMGVGgDDSWTPSVLPQWLLSQTRWQYEVS 1031
                    ******999666655************************75777*************************99756666654 PP

>> DUF4981  Domain of unknown function(DUF4981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   1.2e-19   4.3e-16       1      87 []     647     735 ..     647     735 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 1.2e-19
                 EEEEE--SS--GGGEEEEEEEEETTEEEEEEEEEE---TT-EEEEE--S.---TSS..EEEEEEEEEESS-BSSS-TTSEEEEEEEEEE CS
     DUF4981   1 vtikNrydFtdlsdldlswellkdGkvvasgelelpvaPgesatvtlpetkeaees..eyfltvsfrlkedtpwaeaGhevafeQfals 87 
                 v+i+ +y+F+ +++  l+w++++ G+++ +g+l+l ++P  s ++tl ++   +e+   ++lt+++++ ++t w ea h va++Qf+l+
  CTQ28061.1 647 VRIISEYLFRPTDNEVLRWQVQAAGEPLYHGDLTLALPPEGSDEITLLDSLILPEGarTVWLTLEVTQPQATVWSEAEHRVAWQQFPLP 735
                 799*******************************99***9999999665555444469*****************************96 PP

>> Glyco_hydro_2  Glycosyl hydrolases family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   5.2e-14   1.9e-10       4     110 .]     230     341 ..     227     341 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 5.2e-14
                    CCEEEEEEEETC.SEEEEEEEEEEEEECSSSSCEEEEEEEEETTSTEEEEEEEEEEEESTT-EEEE....EEEEEES--BBECCCB--EEEEEEEE CS
  Glyco_hydro_2   4 edvfvttdlsdd.ksakvevevelendsdksvevtleteikdaegkkvkeessvlslgngetksik....lelevknpklWspetPnLYtlkveld 94 
                     dv++t+ l+    +++++v++++e ++++ + +++ +++   e++ ++++++  + +++e   +     ++l v  p++Ws+etPn Y+++v+l+
     CTQ28061.1 230 CDVQLTPALDALyRDGTLQVQATIEATEAALAGLSVGVSLWRGEEQIAARRQPLGTPTVDERGHYAervdFSLAVATPAHWSAETPNCYRAVVTLW 325
                    5999*****999**************************************6666666666666655666699************************ PP

                    ETTEEEEEEEEEE-B- CS
  Glyco_hydro_2  95 kdgkvidevstrfGfR 110
                    ++++ ++    ++GfR
     CTQ28061.1 326 RGDELLEAEAWDIGFR 341
                    ***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1035 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 7077.00
//
Query:       CTQ28062.1  [L=354]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-32  110.8   0.1    8.3e-32  110.8   0.1    2.0  2  Peripla_BP_3    Periplasmic binding protein-like domain
    1.1e-19   69.9   0.7    8.7e-19   67.1   0.7    2.2  2  LacI            Bacterial regulatory proteins, lacI family
    4.5e-16   59.1   0.0    5.8e-16   58.7   0.0    1.1  1  Peripla_BP_1    Periplasmic binding proteins and sugar bindin
    3.5e-10   39.9   0.0    5.6e-10   39.2   0.0    1.4  1  Peripla_BP_4    Periplasmic binding protein domain
    0.00011   22.4   1.5    0.00054   20.3   1.5    2.2  1  HTH_31          Helix-turn-helix domain
     0.0011   19.0   0.1      0.009   16.0   0.0    2.3  2  HTH_3           Helix-turn-helix
     0.0011   18.9   0.1     0.0056   16.7   0.1    2.2  1  HTH_35          Winged helix-turn-helix DNA-binding
     0.0047   16.9   0.4      0.054   13.5   0.4    2.5  1  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0049   16.6   1.9      0.019   14.8   0.2    2.8  2  HTH_23          Homeodomain-like domain
     0.0078   16.1   0.2      0.041   13.8   0.2    2.4  1  MarR_2          MarR family
  ------ inclusion threshold ------
      0.013   14.9   0.1       0.06   12.8   0.2    2.1  2  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.014   15.2   0.0      0.041   13.7   0.0    1.8  1  HTH_10          HTH DNA binding domain
      0.047   14.0   0.0         12    6.2   0.0    2.7  2  OKR_DC_1_N      Orn/Lys/Arg decarboxylase, N-terminal domain
      0.054   13.9   0.1       0.27   11.7   0.0    2.2  1  HTH_26          Cro/C1-type HTH DNA-binding domain
      0.057   13.6   0.1        0.4   10.8   0.0    2.2  2  Mannitol_dh     Mannitol dehydrogenase Rossmann domain
      0.067   13.0   0.2        0.2   11.4   0.2    1.8  1  HTH_38          Helix-turn-helix domain
      0.072   12.6   0.1       0.23   11.0   0.1    1.9  1  Sigma70_r4      Sigma-70, region 4
      0.088   12.6   0.1       0.22   11.3   0.1    1.6  1  TetR_N          Bacterial regulatory proteins, tetR family
       0.14   12.0   0.0        0.3   11.0   0.0    1.5  1  TrmB            Sugar-specific transcriptional regulator TrmB
       0.19   11.9   0.0       0.37   10.9   0.0    1.5  1  HTH_AraC        Bacterial regulatory helix-turn-helix protein
       0.19   11.6   1.6        0.2   11.6   0.1    1.8  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
       0.98    9.3   5.8        4.3    7.2   0.1    3.6  3  HTH_IclR        IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2       1.8   1.4e+03      32      65 ..       7      44 ..       2     122 .. 0.57
   2 !  110.8   0.1     1e-34   8.3e-32       1     165 [.     173     330 ..     173     331 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.8
                  HHHHHHTTSSS-EEEEE-S-SS-SSHHHHH........ CS
  Peripla_BP_3 32 gfrqaleelglplnetvvaaddpaaaaaaraal....l 65
                   ++++++++g+ ++++    ++p++ +a  +      +
    CTQ28062.1  7 TLEDVARAAGVSQQTVSRVLNRPEVVSARTREQviraM 44
                  45555555555544444444444444433333322220 PP

  == domain 2  score: 110.8 bits;  conditional E-value: 1e-34
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC.-SE..EEEESSCCHHHHHHHHH CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraal.llqalklaa.lPt..AviaasDelAlgvlqal 93 
                   v+hL+elGhr++++++  g+  + ++++r++ +r+al++l++   +tv+   d++aa+++++   l   l   + +P+  A+++a+D++Algvl+al
    CTQ28062.1 173 VRHLWELGHREFGLLA--GPESSVSARLRLASWREALHSLNIARSTTVF--GDWSAASGWQKTFeL---L---HlQPRisAIVVANDQMALGVLSAL 259
                   79**************..99999********************999999..556778888887721...2...2245444***************** PP

                   CCTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GG CS
  Peripla_BP_3  94 reaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReS 165
                   ++ + +  + +sv+g+dd++ + +++PplTtv+q+++ lG++a+e l++l++ ++   ++ llp++l++R+S
    CTQ28062.1 260 AQLNRSGSQAVSVTGYDDTADSLYFQPPLTTVAQDFDLLGKRAVERLIALMAAPQLRIRE-LLPTRLIVRQS 330
                   ******99*********99999*****************************777666666.679*******9 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.7   1.1e-21   8.7e-19       1      46 []       7      52 ..       7      52 .. 0.99
   2 ?   -0.4   0.0       1.2   9.9e+02      15      31 ..      70      86 ..      67      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 1.1e-21
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                t+ DVAr+AGVS +TVSrvLn +e Vs+ tre V +am+ l+Y+Pn
  CTQ28062.1  7 TLEDVARAAGVSQQTVSRVLNRPEVVSARTREQVIRAMQALHYVPN 52
                89*******************************************9 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.2
                HHHHHCTTSSSSTHHHH CS
        LacI 15 TVSrvLnnkerVseetr 31
                T+S  L+ +++++++++
  CTQ28062.1 70 TASLTLHAPSQIAAAIK 86
                99*********999876 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   7.2e-19   5.8e-16      17     261 ..      79     312 ..      63     329 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 7.2e-19
                   HHHHHHHHHHHHHHTEEEEEEE-SSHHHHH...HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTTS-EEEE-HHHHHHHH CS
  Peripla_BP_1  17 ldlvkgitkaakehgvdvlllaageeedla...kaidllkakgidgliiatsdtsfdditakaes.gipvialedaidapdgvPcvipddtqagees 109
                    ++ ++i+  a+ h  +v  +a + ++d     +++d l+a+ i g+i+  + +s  + +  +   ++  ++l+    a+  v cv++d        
    CTQ28062.1  79 SQIAAAIKSHASLHQLEVA-IAMPAQADFValqARLDELRAQHIRGVIVSLPLESATAERLVQDNpDMACLFLDVSPEAD--VCCVRFDHRDGCGAC 172
                   5788889999999999875.67777777666789***************977777555555566667****999886666..*******9999999* PP

                   HHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHHHHHHHHHHTT.-- CS
  Peripla_BP_1 110 tqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaalGavlalkkeGrlk 206
                    ++L + gh++   ll+gpes+  a+ r   +++al+    ++       g+ +   + +   ell  +P i+aiv  nd++alG   al + +  +
    CTQ28062.1 173 VRHLWELGHRE-FGLLAGPESSVSARLRLASWREALHSL--NIARSTTVFGDWSAASGWQKTFELLHLQPRISAIVVANDQMALGVLSALAQLN-RS 265
                   ***********.8**************************..6788888899999*******************************999999999.79 PP

                   GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-S CS
  Peripla_BP_1 207 ikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkink 261
                   + ++v     sv +yd      d+  +++pl++     +llG+ a ++++  + +
    CTQ28062.1 266 GSQAV-----SVTGYDDT---ADSLYFQPPLTTVAQDFDLLGKRAVERLIALMAA 312
                   *****.....*****999...999999****9999999**********9986655 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   6.9e-13   5.6e-10      93     253 ..     154     309 ..      79     314 .. 0.73

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 6.9e-13
                   TT-CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEE CS
  Peripla_BP_4  93 sgerlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanp.ldgil 188
                    + ++++v fd  +   ++ + l e       ++ +laG  ++  a++r++  r++l    +i   ++ + ++w+a+ + q++ +ll  +p + +i+
    CTQ28062.1 154 PEADVCCVRFDHRDGCGACVRHLWELGH---REFGLLAGPESSVSARLRLASWREALHS-LNIARSTT-VFGDWSAASGWQKTFELLHLQPrISAIV 245
                   4556666777777777777777776666...459999********************88.34444443.3449***************5544***** PP

                   ESSCCHHHCHHHHHHHTTTTSTEE..EEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHH CS
  Peripla_BP_4 189 aandgmaegalealeaaglagkvv..vtgqDatpealeaikdGtidatvaqdpyelgyaavelaval 253
                    and ma+g+l+al++ +++g ++  vtg+D t  +l +    t   tvaqd   lg+ ave + al
    CTQ28062.1 246 VANDQMALGVLSALAQLNRSGSQAvsVTGYDDTADSLYFQPPLT---TVAQDFDLLGKRAVERLIAL 309
                   *******************9998778*****9999998876666...89999999999988877776 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   1.5   6.6e-07   0.00054      15      56 ..       6      46 ..       3      57 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 6.6e-07
      HTH_31 15 LsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgl 56
                 ++e+vA+++gvs+ t+sr+ +  + ++s ++ e++ ra ++
  CTQ28062.1  6 ATLEDVARAAGVSQQTVSRVLNRPE-VVSARTREQVIRAMQA 46
                699*******************999.6977766666666543 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.1e-05     0.009      11      31 ..       7      27 ..       6      40 .. 0.92
   2 ?   -0.7   0.0       1.8   1.5e+03      14      46 ..      80     111 ..      74     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-05
                HHHHHHHHHTSSHHHHHHHHT CS
       HTH_3 11 sqeeLAeklGvsrstisriEn 31
                ++e++A+++Gvs++t+sr  n
  CTQ28062.1  7 TLEDVARAAGVSQQTVSRVLN 27
                789***************988 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.8
                 HHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHH CS
       HTH_3  14 eLAeklGvsrstisriEnGernPsletlkklak 46 
                 ++A+++  s +++ ++E  +++P +   ++l  
  CTQ28062.1  80 QIAAAI-KSHASLHQLEVAIAMPAQADFVALQA 111
                 678888.59999999999999999988888765 PP

>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   6.9e-06    0.0056      13      41 ..       3      31 ..       1      48 [. 0.83

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.9e-06
      HTH_35 13 krgttLaalsreaglssstlsnaltrpwp 41
                +r  tL +++r+ag s++t+s++l+rp +
  CTQ28062.1  3 RRTATLEDVARAAGVSQQTVSRVLNRPEV 31
                7999**********************943 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.4   6.6e-05     0.054      23      44 ..       7      28 ..       4      48 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.6e-05
                HHHHHHHHTTSSHHHHHHHHHH CS
   HTH_Crp_2 23 tqeelAsmlGltretvsrilse 44
                t e+ A+  G++++tvsr+l++
  CTQ28062.1  7 TLEDVARAAGVSQQTVSRVLNR 28
                779*****************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   2.3e-05     0.019      19      40 ..       7      28 ..       2      44 .. 0.92
   2 ?   -0.6   0.1       1.5   1.2e+03      15      33 ..     198     216 ..     194     217 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.3e-05
      HTH_23 19 svreIAreLgvsrrTvyrwlkr 40
                + +++Ar+ gvs++Tv+r+l+r
  CTQ28062.1  7 TLEDVARAAGVSQQTVSRVLNR 28
                789*****************99 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.5
      HTH_23  15 aeGlsvreIAreLgvsrrT 33 
                 ++ +s+re+   L++ r+T
  CTQ28062.1 198 LRLASWREALHSLNIARST 216
                 557899999999*****99 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   5.1e-05     0.041      20      44 ..       4      28 ..       1      30 [. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.1e-05
                SEEEHHHHHHHHTSSHHHHHHHHHH CS
      MarR_2 20 rdltvgelarrlglsksavsrilkr 44
                r  t  ++ar+ g+s+++vsr+l+r
  CTQ28062.1  4 RTATLEDVARAAGVSQQTVSRVLNR 28
                456999*****************98 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   7.4e-05      0.06      27      50 ..       5      28 ..       2      28 .. 0.90
   2 ?   -3.0   0.0         6   4.9e+03      29      39 ..     287     297 ..     286     297 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.4e-05
  HTH_Tnp_ISL3 27 srsvkavArqlgvSwtTVwrildr 50
                  +++  +vAr  gvS  TV r+l+r
    CTQ28062.1  5 TATLEDVARAAGVSQQTVSRVLNR 28
                  47999****************997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6
  HTH_Tnp_ISL3  29 svkavArqlgv 39 
                   + ++vA+++++
    CTQ28062.1 287 PLTTVAQDFDL 297
                   5799***9975 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.1e-05     0.041      22      46 ..       4      28 ..       2      31 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.1e-05
      HTH_10 22 RrvtlkeLAkelGIskstlsehLrk 46
                R++tl+++A + G+s++t+s  L++
  CTQ28062.1  4 RTATLEDVARAAGVSQQTVSRVLNR 28
                889********************98 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.039        32      19      50 ..     125     156 ..     109     176 .. 0.75
   2 ?    6.2   0.0     0.014        12      32      61 ..     234     263 ..     225     266 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.039
  OKR_DC_1_N  19 evvgvtstdDllsvieqnsriaavvlsvddea 50 
                  v  + ++  ++ +++ n+++a++ l+v+ ea
  CTQ28062.1 125 IVSLPLESATAERLVQDNPDMACLFLDVSPEA 156
                 5555666777999**************98443 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.014
  OKR_DC_1_N  32 vieqnsriaavvlsvddeaaelldeirern 61 
                 ++  ++ri+a+v++ d+ a ++l+++ ++n
  CTQ28062.1 234 LLHLQPRISAIVVANDQMALGVLSALAQLN 263
                 566789******************999988 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00033      0.27       9      42 ..       4      36 ..       1      44 [. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00033
      HTH_26  9 rgitkseLargtgisaatlsrlvkgkpervsldt 42
                r  t  ++ar++g+s++t+sr ++  pe vs+ t
  CTQ28062.1  4 RTATLEDVARAAGVSQQTVSRVLNR-PEVVSART 36
                555999******************7.68888765 PP

>> Mannitol_dh  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00049       0.4      60     127 ..      33     108 ..      10     128 .. 0.72
   2 ?   -0.4   0.0       1.4   1.1e+03      79      95 ..     301     317 ..     289     320 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00049
                  SS---EEEE--EEEEEEGGG-HHHHHHHHTSTT--EEEE---TTT...BETTTEB-TTSHHHHHHHH-TT.....H CS
  Mannitol_dh  60 eeskearlvgsvnavlsveedlealieamaePeirivsltvtekG...idatgeletdlpaiaadlakpe.....l 127
                   + ++++++++++a+ +v ++ ++l++  a P i +++ ++t      i a+ + + +l +++  +a p+     +
   CTQ28062.1  33 SARTREQVIRAMQALHYVPNRSAQLLAGKAAPFIGLITASLTLHApsqIAAAIKSHASLHQLEVAIAMPAqadfvA 108
                  577999************************************9665443344444455555555555554544444 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.4
                  G-HHHHHHHHTSTT--E CS
  Mannitol_dh  79 edlealieamaePeiri 95 
                   ++e li++ma P+ ri
   CTQ28062.1 301 RAVERLIALMAAPQLRI 317
                  45799*********997 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00025       0.2      22      43 ..       7      28 ..       3      28 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
      HTH_38 22 slreIArrLgrspsTIsRElkR 43
                +l ++Ar  g+s +T+sR l R
  CTQ28062.1  7 TLEDVARAAGVSQQTVSRVLNR 28
                7889***************987 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00028      0.23      21      42 ..       6      27 ..       4      28 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00028
                --HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4 21 lTleEIgerlgiSrerVrqiek 42
                 Tle++++  g+S+ +V++ ++
  CTQ28062.1  6 ATLEDVARAAGVSQQTVSRVLN 27
                7*****************9776 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00027      0.22      17      34 ..       6      23 ..       4      24 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
                --HHHHHHHHTSSHHHHH CS
      TetR_N 17 ttvreIAkrAGvskgalY 34
                +t++++A++AGvs+ ++ 
  CTQ28062.1  6 ATLEDVARAAGVSQQTVS 23
                69************9986 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00037       0.3      21      45 ..       4      28 ..       1      30 [. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00037
                CCCHHCHHCCCTTSSCHCHHHHHHH CS
        TrmB 21 gpatadeiaeelgvprskvYevLrs 45
                  at +++a+++gv++++v +vL++
  CTQ28062.1  4 RTATLEDVARAAGVSQQTVSRVLNR 28
                57899******************96 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00046      0.37      10      29 ..       7      26 ..       3      28 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00046
                -HHHHHHHTTSSHHHHHHHH CS
    HTH_AraC 10 tiediAdelgfSrsyFsrlF 29
                t+ed+A ++g+S+++ sr++
  CTQ28062.1  7 TLEDVARAAGVSQQTVSRVL 26
                89***************985 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00024       0.2      13      39 ..      10      36 ..       6      46 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
  YdaS_antitoxin 13 aLAealgvsqqaVsqWlkgkkqvpaer 39
                     +A+a gvsqq+Vs++l++   v+a+ 
      CTQ28062.1 10 DVARAAGVSQQTVSRVLNRPEVVSART 36
                    57***************8544488765 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0052       4.3      17      40 ..       4      27 ..       2      28 .. 0.88
   2 ?   -0.7   0.1       1.5   1.2e+03       5      33 ..     252     265 ..     247     270 .. 0.58
   3 ?    2.4   0.3      0.17   1.4e+02      13      48 ..     310     350 ..     300     353 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0052
                SS-BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 17 qeltlselArrtglpkStvhRlLq 40
                +  tl ++Ar++g++  tv+R L+
  CTQ28062.1  4 RTATLEDVARAAGVSQQTVSRVLN 27
                4569*****************996 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.5
                 HHHHHCT-CTTBSS-BHHHHHHHHTS-HH CS
    HTH_IclR   5 alaiLdalaeapqeltlselArrtglpkS 33 
                 al +L ala                l++S
  CTQ28062.1 252 ALGVLSALA---------------QLNRS 265
                 444555555...............55544 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.17
                 CTTBSS.....-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR  13 aeapqe.....ltlselArrtglpkStvhRlLqtLvelGyv 48 
                  +apq      l  + + r++++p +++    qtL +l+ +
  CTQ28062.1 310 MAAPQLrirelLPTRLIVRQSAWPVAAAEDRQQTLAQLKAL 350
                 444443444444667799999***99999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2629.24
//
Query:       CTQ28063.1  [L=146]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-11   43.4   0.1    3.5e-11   43.1   0.1    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    9.9e-11   41.9   0.1    1.3e-10   41.5   0.1    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    5.3e-09   36.4   0.1      9e-09   35.6   0.1    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    6.9e-06   26.2   0.1    4.2e-05   23.6   0.1    2.0  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.032   14.2   0.0      0.057   13.4   0.0    1.5  1  FR47             FR47-like protein
      0.073   13.0   0.0       0.12   12.3   0.0    1.3  1  Dzip-like_N      Iguana/Dzip1-like DAZ-interacting protein N-


Domain annotation for each model (and alignments):
>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.1   1.2e-14   3.5e-11      20     109 ..      33     122 ..      11     139 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 1.2e-14
  Acetyltransf_10  20 ealrerieegealllvaeeggkivGviel.rdgs...hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkav 109
                      ++l++ +  ++++++  +e+g+++ v++  +d     +++ +++ p+ +gqG+g++L+ a++e++   + + ++ + a    + fY+++GF ++
       CTQ28063.1  33 QQLEQAF-RQSTFCWFGYENGQLIAVARAiSDCTwssYLADVAIVPARQGQGYGQQLMLAIREQL--LPFG-KIFIYAVADKITFYQRFGFAML 122
                      7889999.99999**************8868887899***************************8..4556.9******************987 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.1   4.3e-14   1.3e-10      21     117 .]      33     119 ..      12     119 .. 0.76

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 4.3e-14
                     HHHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHT CS
  Acetyltransf_1  21 eeefeesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYekl 115
                     +    e ++++  ++++++e+g+li+ +++  +        y+ ++a+ p+++g+G+G++L+ a+ e+++  g   i+++  +d    i +Y+++
      CTQ28063.1  33 QQL--EQAFRQSTFCWFGYENGQLIAVARAISDCT---WSSYLADVAIVPARQGQGYGQQLMLAIREQLLPFGK--IFIYAVADK---ITFYQRF 117
                     222..222334457899***********6666555...89********************************77..888777777...******* PP

                     TE CS
  Acetyltransf_1 116 GF 117
                     GF
      CTQ28063.1 118 GF 119
                     *9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.1     3e-12     9e-09       5      74 ..      45     119 ..      40     120 .. 0.70

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 3e-12
                     EEEEEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEEEE.EEEETHHHHHHHHHHTTE CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld...aeitrlaVdpeyrgkGiGraLleaae.....kgiile.qlelnaekaikfYeklGF 74 
                     ++  +++g+ +  +++  +     ++  +a+ p+ +g+G+G++L+ a++      g +++ ++       i fY+++GF
      CTQ28063.1  45 CWFGYENGQLIAVARAISDCtwsSYLADVAIVPARQGQGYGQQLMLAIReqllpFG-KIFiYAVA---DKITFYQRFGF 119
                     6667888888887776665566666667*****************87222455655.22322222...3599******* PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.1   1.4e-08   4.2e-05      74     126 ..      68     120 ..       9     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.4e-08
                     EEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--SSHHHHHTTT-E CS
  Acetyltransf_9  74 agvtgVavapehrgrgvlskLlaraleemreegqplsllfPssipiYrrfGye 126
                      ++++Va  p  +g+g+ ++L+ +  e++   g+ +++ ++ +i++Y+rfG+ 
      CTQ28063.1  68 SYLADVAIVPARQGQGYGQQLMLAIREQLLPFGKIFIYAVADKITFYQRFGFA 120
                     6899***********************************************96 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.9e-05     0.057      22      80 ..      68     122 ..      47     127 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfeki 80 
                 ++l  + + p  +++G+g++l  a+ +++   gk+  +++va+    i +y++ Gf  +
  CTQ28063.1  68 SYLADVAIVPARQGQGYGQQLMLAIREQLLPFGKIF-IYAVAD---KITFYQRFGFAML 122
                 7899999************************99865.555554...3789999999765 PP

>> Dzip-like_N  Iguana/Dzip1-like DAZ-interacting protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     4e-05      0.12       8      50 ..      11      53 ..       7      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4e-05
  Dzip-like_N  8 ekldwrklasvDvdrvakeldvdtLqenienitFcnlereeaa 50
                  ++dw+++ ++  ++  +e dv+ L++   + tFc    e+++
   CTQ28063.1 11 ARVDWQRVRTIIAEAGLNERDVQQLEQAFRQSTFCWFGYENGQ 53
                 68*********************************98888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1111.19
//
Query:       CTQ28064.1  [L=72]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-09   37.1   0.0    3.2e-09   37.0   0.0    1.1  1  DUF4177   Domain of unknown function (DUF4177)


Domain annotation for each model (and alignments):
>> DUF4177  Domain of unknown function (DUF4177)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   1.8e-13   3.2e-09       4      65 .]       7      71 ..       4      71 .. 0.92

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.8e-13
     DUF4177  4 kvvevkegglg.....ngkieeeeleeyqeilnelAkeGWrlvsii.pvkesrgvgaaesilliFeRe 65
                 vv +keg lg     ++k +++++++   +l  + +eGW+++++  + +++  ++++e +l ++eR+
  CTQ28064.1  7 RVVIYKEGLLGslffgEAKADPDKMSQ---FLSSYTREGWEVKTMSvERRRTALFWSREAYLFVLERP 71
                6899999999999999999********...****************766799***************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 557.80
//
Query:       CTQ28065.1  [L=365]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-22   78.4   3.2    6.3e-22   77.6   3.2    1.4  1  HTH_18     Helix-turn-helix domain
    6.7e-16   58.5   0.0    9.2e-16   58.1   0.0    1.3  1  DJ-1_PfpI  DJ-1/PfpI family
    1.2e-14   54.0   0.2    3.2e-06   27.1   0.1    2.3  2  HTH_AraC   Bacterial regulatory helix-turn-helix proteins, Ar
    0.00096   18.9   0.3        1.9    8.4   0.0    2.5  2  TetR_N     Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
       0.06   13.7   0.4        5.3    7.5   0.0    2.6  2  DUF3046    Protein of unknown function (DUF3046)


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   3.2   1.8e-25   6.3e-22       1      81 []     249     328 ..     249     328 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 1.8e-25
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrrr 81 
                 la+++g+ +rt+ r+f++ +g+tp+++l + Rl rAr+ L+e + + +++iA+++GF+++++++++fr++f ++P +yr++
  CTQ28065.1 249 LAQRAGMGTRTFLRRFEEATGKTPARWLLEERLLRARQHLTE-STMGIDQIAERCGFASAGTLRHHFRQHFALSPLQYRKQ 328
                 89**************************************86.************************************96 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   2.6e-19   9.2e-16      28     164 ..      52     187 ..      18     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 2.6e-19
                 EEEEEEESSTSEEEETTSEEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTSEE--SGGGHH CS
   DJ-1_PfpI  28 ikvdvvsvdkeevkgsrGlkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekgklvaaICagpqlLaaagvlkgrrvTsypavkd 126
                 ++  v+ vd+++   + G ++  d   +    a+ D++v+pG r    +   +e++ + + +++ +g ++ +IC g ++Laaag+l+gr++T+++ ++ 
  CTQ28065.1  52 YQFAVAAVDEGPLCATGGIRLMTDGGPE--LLAQADTIVVPGWRG--VDAPVPEALCAALASAHARGCRIISICSGVFVLAAAGLLNGRQATTHWRYTA 146
                 6666777777777777778887777666..45679********99..55555789*******************************************9 PP

                 HH..HHTTSEE-SS.SEEEETTEEEESSGGGHHHHHHHHHH CS
   DJ-1_PfpI 127 kl..ekagakyvdk.rvvvdgnlvTsrgpgaaiefalelle 164
                 +l  + +  ++v++  +v d+ l+Ts+g  a i+++l l++
  CTQ28065.1 147 ALqsRFPQIQVVEDvLYVGDALLMTSAGSAAGIDLCLHLVR 187
                 99766678888888799********************9986 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   4.3e-09   1.5e-05       1      41 [.     236     276 ..     236     277 .. 0.97
   2 !   27.1   0.1   9.1e-10   3.2e-06       2      42 .]     285     327 ..     285     327 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 4.3e-09
                 HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyr 41 
                 L+++l+ + t++++A+ +g+  ++F r+F ++tG+tP  ++
  CTQ28065.1 236 LHQHLAASHTVASLAQRAGMGTRTFLRRFEEATGKTPARWL 276
                 899***********************************997 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 9.1e-10
                 HCCCSCT.--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   2 renlstn.ltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 r++l+++ + i++iA+ +gf S  ++++ F++ +  +P qyr+
  CTQ28065.1 285 RQHLTEStMGIDQIAERCGFaSAGTLRHHFRQHFALSPLQYRK 327
                 5788888899*******************************96 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1   0.00068       2.4      18      37 ..     245     264 ..     241     266 .. 0.91
   2 !    8.4   0.0   0.00052       1.9      17      38 ..     293     315 ..     291     317 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00068
                 -HHHHHHHHTSSHHHHHHHT CS
      TetR_N  18 tvreIAkrAGvskgalYryF 37 
                 tv+ +A+rAG++ +++ r+F
  CTQ28065.1 245 TVASLAQRAGMGTRTFLRRF 264
                 8999***************9 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00052
                 --HHHHHHHHTS.SHHHHHHHTS CS
      TetR_N  17 ttvreIAkrAGv.skgalYryFp 38 
                 +++++IA+r+G  s+g+l ++F+
  CTQ28065.1 293 MGIDQIAERCGFaSAGTLRHHFR 315
                 5799*******73789*****97 PP

>> DUF3046  Protein of unknown function (DUF3046)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0015       5.3       9      38 ..     185     215 ..     183     222 .. 0.79
   2 ?    3.6   0.1     0.023        84       3      31 ..     257     285 ..     255     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0015
     DUF3046   9 lveeeFGsayarslardhvlse.lggrTaee 38 
                 lv+e FGs+ a+++ar +v+s   +g  a++
  CTQ28065.1 185 LVREDFGSEAANVVARRLVVSPhRDGGQAQQ 215
                 899***************9974145555555 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.023
     DUF3046   3 lteFwelveeeFGsayarslardhvlsel 31 
                  + F ++ ee+ G++ ar+l+++  l + 
  CTQ28065.1 257 TRTFLRRFEEATGKTPARWLLEERLLRAR 285
                 67899****************99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2638.75
//
Query:       CTQ28066.1  [L=132]
Description: Rhodanese domain protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-06   27.5   0.0    5.1e-06   27.0   0.0    1.3  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   2.8e-10   5.1e-06      21     106 ..      51     123 ..      28     124 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.8e-10
   Rhodanese  21 ppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggr.aaaaaallk..klGyknvsvldGGfkawke 106
                 ++e++++ h+pgA ++             p  ++ +e ++  +  ++ +vvyc+g ++  a   a+lk  +lG   v+ + GG+++w  
  CTQ28066.1  51 SEEAFARRHLPGAQHL-------------PHSQITAERMAA-WPADTLFVVYCAGPHCnGAD-VAALKlaELG-RPVKMMLGGLTGWED 123
                 6778************.............666666666664.567899********994444.4444422699.88***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1021.93
//
Query:       CTQ28067.1  [L=108]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-05   24.4   0.0    1.6e-05   24.3   0.0    1.0  1  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   9.1e-10   1.6e-05       5      63 ..      12      70 ..       8      89 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 9.1e-10
                 --SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-S CS
  Meth_synt_2  5 tiGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRg 63
                  +GSf     +++ar+++ +g +++++ ++  +++i+++v++q + g+ v+ +ge+ R 
   CTQ28067.1 12 IVGSFLRPDSIKQARQQLAEGIIDAAQLREIENNAIRHLVQQQCDCGLHVVTDGEFRRA 70
                 59******************************************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 886.00
//
Query:       CTQ28068.1  [L=176]
Description: 4-hydroxythreonine-4-phosphate dehydrogenase 2 (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-75  254.3   0.1    1.6e-75  254.1   0.1    1.0  1  PdxA      Pyridoxal phosphate biosynthetic protein PdxA


Domain annotation for each model (and alignments):
>> PdxA  Pyridoxal phosphate biosynthetic protein PdxA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.1   0.1   9.2e-80   1.6e-75     112     282 .]       1     170 [.       1     170 [. 0.99

  Alignments for each domain:
  == domain 1  score: 254.1 bits;  conditional E-value: 9.2e-80
                 EEEEETTEEEEESS-SS-GGGHHHH--HHHHHHHHHHHHHHHHHTTT.SSSEEEEE-SSGGGGTTTTTSSHHHHTHHHHHHHHHHCTHEEEEEE-HHHH CS
        PdxA 112 mmlaseeLrvalvTthipLkevakaitkerllevlrllakalkrdfgiekpriaVaGLNPhaGenGllGrEEeeiiepaiekaraegievegplpaDtl 210
                 m+l +e+L+v+++Tthi+L++  +++++ r+++v+ ++++ l+r +g+ +priaVaG NPhaGenGl+G+EE++i++pa++++ra+g+ev+gp+p+Dt+
  CTQ28068.1   1 MVLYTEKLKVIHITTHISLRQFLDTLNQPRIETVIGVADRFLRR-VGYPRPRIAVAGVNPHAGENGLFGDEEIRIVAPAVAAMRAKGVEVTGPCPPDTV 98 
                 89******************************************.****************************************************** PP

                 TSHHHHTT-SEEEESSHHHHHHHHHHHHTTTEEEEEESSSSEEEEESS-S-TTCTTTT---THHHHHHHHHH CS
        PdxA 211 FtkaalkkydavvamYHDqgliplKllafdegvnvtlGLpiirtSvDhGtafdiagkgkadekSlleAiklA 282
                 F++ +++ yd+vvamYHDqg+iplKll+f +gvn+t+GLp+irtS DhGtafdia++gka+++S+ ++i+lA
  CTQ28068.1  99 FMQCHEGMYDMVVAMYHDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFDIAWTGKAKSESMATSIELA 170
                 *********************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1304.51
//
Query:       CTQ28069.1  [L=253]
Description: Glycerol-3-phosphate regulon repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-48  163.0   0.0    7.5e-48  162.5   0.0    1.2  1  DeoRC           DeoR C terminal sensor domain
    3.2e-17   62.0   0.2    6.3e-17   61.1   0.2    1.4  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    3.2e-05   23.9   0.6    0.00039   20.5   0.0    2.5  2  DprA_WH         DprA winged helix domain
    6.6e-05   22.8   0.0    0.00023   21.0   0.0    1.9  2  HTH_11          HTH domain
     0.0018   18.1   0.0     0.0043   16.9   0.0    1.6  1  HTH_5           Bacterial regulatory protein, arsR family
     0.0031   17.1   0.1     0.0085   15.7   0.0    1.8  2  GntR            Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.022   14.8   0.0    1.4  1  Replic_Relax    Replication-relaxation
      0.025   14.8   0.0      0.045   14.0   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
      0.029   14.5   0.1       0.11   12.6   0.0    2.1  2  HTH_9           RNA polymerase III subunit RPC82 helix-turn-h
      0.082   13.3   0.0       0.31   11.4   0.0    2.0  1  Rrf2            Transcriptional regulator


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.5   0.0   4.2e-51   7.5e-48       4     159 ..      77     231 ..      74     232 .. 0.99

  Alignments for each domain:
  == domain 1  score: 162.5 bits;  conditional E-value: 4.2e-51
       DeoRC   4 eeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflgang 102
                  eK++IA+aAa+l++ gd+i+ldaGtT+ elar++ +  +l+v+T +l++a  Lse ++i+v ++GG+++ +s+s++g +  + l+++  d+af+++ng
  CTQ28069.1  77 LEKQAIASAAAALVKAGDAIVLDAGTTMIELARQITHL-PLRVITSDLHIALFLSEFKQIEVTIIGGRIDDSSQSCIGDHGRRLLQTIWPDLAFVSCNG 174
                 59***********************************9.************************************************************ PP

       DeoRC 103 idaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitD 159
                 +d e+g+t ++ee+a++kr l+++arr illaDssK+g  ++++ia+l +++ ++tD
  CTQ28069.1 175 WDLEKGITAPTEEKAALKRDLMANARRRILLADSSKYGAWSLFNIAPLASLTDIVTD 231
                 ********************************************************9 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.2   3.5e-20   6.3e-17       1      54 [.       6      59 ..       6      60 .. 0.98

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 3.5e-20
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsi 54
                R+eqi++ lk++  ++v++lv+  + S+aTiRRDL +L+++g++ RthGG++++
  CTQ28069.1  6 RLEQIMDFLKSHNLVTVDQLVAATNASPATIRRDLIKLDQEGVISRTHGGVTLN 59
                99*************************************************987 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.2e-07   0.00039      16      61 .]       9      55 ..       6      55 .. 0.89
   2 ?    0.9   0.2      0.27   4.9e+02      29      49 ..      94     114 ..      65     117 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.2e-07
     DprA_WH 16 rvLaaL.gpePvhvDqLvrrtglpaaevsaaLleLELaGlverlpGg 61
                ++ + L ++  v+vDqLv++t +++a++ + L+ L  +G + r  Gg
  CTQ28069.1  9 QIMDFLkSHNLVTVDQLVAATNASPATIRRDLIKLDQEGVISRTHGG 55
                56666646789*********************************998 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.27
     DprA_WH  29 DqLvrrtglpaaevsaaLleL 49 
                 D++v ++g ++ e++++ ++L
  CTQ28069.1  94 DAIVLDAGTTMIELARQITHL 114
                 666666666666666666665 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.3e-07   0.00023       1      44 [.       6      48 ..       6      56 .. 0.91
   2 ?   -2.5   0.0       2.8     5e+03      30      37 ..     161     168 ..     161     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.3e-07
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                Rl+qi+ +L ++++ ++ ++L   +n S +t+rrd+ +L   gv
  CTQ28069.1  6 RLEQIMDFL-KSHNLVTVDQLVAATNASPATIRRDLIKLDQEGV 48
                89*******.88888************************99993 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.8
      HTH_11  30 rtvrrdIk 37 
                 +t++ d++
  CTQ28069.1 161 QTIWPDLA 168
                 79****97 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.4e-06    0.0043       6      46 ..       9      50 ..       6      51 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.4e-06
                HHHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5  6 kILklLae.gelcvcelaeelglsqstvShHLkkLreaGLVe 46
                +I+ +L + +  +v +l+++++ s++t+++ L kL ++G+++
  CTQ28069.1  9 QIMDFLKShNLVTVDQLVAATNASPATIRRDLIKLDQEGVIS 50
                799999997779***************************996 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.7e-06    0.0085      24      60 ..      20      55 ..       8      58 .. 0.89
   2 ?   -3.4   0.0       4.6   8.2e+03      42      49 ..     239     246 ..     239     248 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.7e-06
                ---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTC CS
        GntR 24 LPsereLaaefgVsrttvReALrrLeaeglverrqgr 60
                  ++ +L+a+ + s  t+R+ L++L +eg++ r +g+
  CTQ28069.1 20 V-TVDQLVAATNASPATIRRDLIKLDQEGVISRTHGG 55
                5.8999****************************997 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.6
                 HHHHHHHH CS
        GntR  42 ReALrrLe 49 
                 ReAL +L+
  CTQ28069.1 239 REALETLS 246
                 89*99996 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.2e-05     0.022       2      43 ..      12      52 ..      11      60 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.2e-05
  Replic_Relax  2 rlLaehrvlTtrqiarllfashratarrrLarLrelgllsrl 43
                  ++L+ h + T +q+ ++++as  + +rr L +L ++g++sr+
    CTQ28069.1 12 DFLKSHNLVTVDQLVAATNASPAT-IRRDLIKLDQEGVISRT 52
                  689*********************.***************95 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.5e-05     0.045      10      52 ..       7      49 ..       4      55 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.5e-05
                    HHHHHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
  Fe_dep_repress 10 LetIYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyv 52
                    Le+I +  ++++ v++ +l  + n sp+++   l kL+++G +
      CTQ28069.1  7 LEQIMDFLKSHNLVTVDQLVAATNASPATIRRDLIKLDQEGVI 49
                    9***************************************965 PP

>> HTH_9  RNA polymerase III subunit RPC82 helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.3e-05      0.11      16      53 ..       8      45 ..       5      50 .. 0.89
   2 ?   -3.4   0.0       5.9   1.1e+04      29      41 ..     224     236 ..     223     238 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.3e-05
                HHHHHHHHHHSSBEHHHHHHHHSSTHHHHHHHHHHHHH CS
       HTH_9 16 akVvetLlrkgrltlrelvkktkLsldqVkksLvvLiq 53
                ++++++L +++  t+++lv +t+ s+  +++ L  L q
  CTQ28069.1  8 EQIMDFLKSHNLVTVDQLVAATNASPATIRRDLIKLDQ 45
                689***************************99987765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.9
                 EHHHHHHHHSSTH CS
       HTH_9  29 tlrelvkktkLsl 41 
                 +l+++v+++ L+ 
  CTQ28069.1 224 SLTDIVTDAHLPD 236
                 7899999999886 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.31      23      67 ..      17      58 ..       5      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
                CC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEE CS
        Rrf2 23 eepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrL 67
                ++ v+++++ + +n sp  +++ l kL ++g++  + G   G++L
  CTQ28069.1 17 HNLVTVDQLVAATNASPATIRRDLIKLDQEGVISRTHG---GVTL 58
                4459*****************************98754...5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1998.82
//
Query:       CTQ28070.1  [L=314]
Description: L-lactate dehydrogenase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-33  113.2   0.1    1.7e-32  112.5   0.1    1.4  1  Ldh_1_N          lactate/malate dehydrogenase, NAD binding do
    4.7e-20   72.2   0.0      1e-19   71.1   0.0    1.5  1  Ldh_1_C          lactate/malate dehydrogenase, alpha/beta C-t
    0.00016   21.7   0.0    0.00025   21.1   0.0    1.3  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    0.00021   21.8   0.2    0.00041   20.9   0.2    1.5  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
     0.0011   19.2   0.1     0.0025   18.1   0.1    1.7  1  TrkA_N           TrkA-N domain
     0.0048   16.5   0.1     0.0096   15.5   0.1    1.6  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
     0.0066   16.9   0.0      0.012   16.0   0.0    1.5  1  NAD_binding_7    Putative NAD(P)-binding
  ------ inclusion threshold ------
      0.023   14.3   0.2      0.057   13.0   0.0    1.8  3  DAO              FAD dependent oxidoreductase
      0.024   13.9   0.3      0.037   13.3   0.3    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
      0.037   14.7   0.1      0.097   13.4   0.1    1.8  1  CoA_binding      CoA binding domain
      0.044   13.7   0.2      0.067   13.1   0.2    1.3  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.048   14.5   0.0      0.085   13.7   0.0    1.4  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
      0.065   13.5   0.1       0.13   12.6   0.1    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.11   12.2   0.0       0.19   11.4   0.0    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5   0.1   1.3e-35   1.7e-32       2     141 .]       7     146 ..       6     146 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 1.3e-35
                 EEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEEESSGGGGTTESEEEE-.-S-SS-TTTTHHHHHHHHHHHHH CS
     Ldh_1_N   2 kvavvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvkvkvsekeeealkdadvvvit.agvprkpGetRddLlkvNakIvk 99 
                 kv+++Ga G++G+s a++l+n+ +++el L+D++++++e++a dls+++++l+  + +s  e ++++d+d++vit +g   +pG++R+d l ++akIvk
  CTQ28070.1   7 KVMIIGA-GNVGASAAYALLNQSICEELILVDLNQQRAEAHAQDLSDAAAYLPGMMTISTREASDCADVDIAVITvSGGALRPGQSRLDELTSTAKIVK 104
                 9******.***************************************************************99965789999***************** PP

                 HHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHHTS-GGGEEE CS
     Ldh_1_N 100 eiveaiakvapnaivlvvsNPvdiltevlkkasglpkkrvig 141
                 +iv+ ++++++n i+lv++NP+di+t  +++ sglp+++v+g
  CTQ28070.1 105 SIVPTMMANGFNGIFLVATNPCDIITWQVWQLSGLPRSQVLG 146
                 ***************************************987 PP

>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   8.1e-23     1e-19       3     161 ..     151     311 ..     150     313 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 8.1e-23
                 HHHHHHHHHHHHHHTS-GGGEE--EEBSSST..........ETTEEHHHHHTTSTTSTHHHHHHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHHHHH CS
     Ldh_1_C   3 LDivRaktflaekagvtprsvkvtViGgHsg..........vtiipllsqvkellklsekqleeliervqnggdevvkakkGagsatlsmAvAgakfve 91 
                 LD+ R++ +la++ ++ ++s ++ ++G+H++          v + p+ +  ++   l   + e++ ++v++ g e+   k   g + +++A  +a++ +
  CTQ28070.1 151 LDTTRLRRLLAQELEIGAQSIDAFILGEHGDtqfpvwshssVYGTPIADLYQQRTGLPL-DREAMADKVRKLGFEIYAGK---GCTEYGVAGTIAEICR 245
                 9**********************************************999999777775.46889***********9877...**************** PP

                 HHHTTHTEEEEEEEEEESCCCECCSSEEEEEEEEEEETTEEEEE-------HHHHHHHHHHHHHHHHHHH CS
     Ldh_1_C  92 allrdtkeilsagvyldgevglkdqeieyfsvPvvlgknGvekvleilklndfeeekleksvkeLkkeie 161
                 +++++ ++ l ++ +ldge+g++       +vP+vl + Gv++++e l+l  +e+ k+ +s++ +k++i 
  CTQ28070.1 246 NIFTGSHRALAVSCILDGEYGVSG---AAAGVPAVLAQGGVKQIIE-LQLAGEEQAKFSQSIAVIKANIA 311
                 ************************...699****************.********************996 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.9e-07   0.00025      10      59 ..       3      53 ..       1     100 [. 0.85

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.9e-07
                  .TT-EEEEES-SHHHHHHHHHHHCC.T-CEEEEEESSHHHHHHHHHHHT.E CS
  Shikimate_DH 10 lkekkvlliGaGemaelvakhLlak.gvkkvvvaNRtlerakelaeelkge 59
                   k +kv++iGaG+++  +a +Ll++  +++++ +  +++ra++ a++l+++
    CTQ28070.1  3 TKARKVMIIGAGNVGASAAYALLNQsICEELILVDLNQQRAEAHAQDLSDA 53
                  5789******************99956899*************99999777 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.2   3.2e-07   0.00041       1      90 [.       7     102 ..       7     109 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.2e-07
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.........-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHT CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.........vkvtavdneeaaeeadvvvlavkpedveevlselakdalk 87 
                    k+ iiGaGn+g++ a  ll++    +e++++ + n+++ae+ a++l+          ++++++++++a+  d+ v++v   ++    s l + ++ 
     CTQ28070.1   7 KVMIIGAGNVGASAAYALLNQS-ICEELILV-DLNQQRAEAHAQDLSdaaaylpgmMTISTREASDCAD-VDIAVITVSGGALRPGQSRLDELTST 99 
                    688******************9.66667757.9********************9988888888888887.99****99887777666666444445 PP

                    TSE CS
  F420_oxidored  88 gkl 90 
                     k+
     CTQ28070.1 100 AKI 102
                    555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1     2e-06    0.0025       1      43 [.       8      52 ..       8     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2e-06
                EEEES-SHHHHHHHHHHHHTT..EEEEEEESSHHHHHHHHHTTSE CS
      TrkA_N  1 iiiiGlGrvGrslaeeLsegg..kdvvvidkdeerveelreegle 43
                ++iiG+G+vG s a  L +++  ++ +++d +++r+e ++++  +
  CTQ28070.1  8 VMIIGAGNVGASAAYALLNQSicEELILVDLNQQRAEAHAQDLSD 52
                79*****************877978*************9988733 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   7.5e-06    0.0096       2      42 ..       7      49 ..       6     114 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.5e-06
                    EEEEE--STTHHHHHHHH..HHCTSEEEEE-S-HHHHHHHCTT CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavl..aeighevigvDideekvdklnsg 42
                    k+ +iG+G vG+  a +l   +i+ e+i+vD ++++ ++  ++
      CTQ28070.1  7 KVMIIGAGNVGASAAYALlnQSICEELILVDLNQQRAEAHAQD 49
                    899*********998877334678***********98877665 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.4e-06     0.012       5      69 ..       3      81 ..       1     110 [. 0.68

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.4e-06
  NAD_binding_7  5 lkgkkvlvvGgGevAarkvrklleag..akvtvvapevkeele..............elvklaeeelekdlegadlviaat 69
                    k +kv+++G+G+v+a+ ++ ll+++   ++++v+ + +++ e              + ++++ +e+ +d++++d++++++
     CTQ28070.1  3 TKARKVMIIGAGNVGASAAYALLNQSicEELILVDLNQQRA-EahaqdlsdaaaylpGMMTISTREA-SDCADVDIAVITV 81
                   6889********************98655677777774222.2233333333333332222333322.5677777666655 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.5e-05     0.057       2      26 ..       8      36 ..       7      58 .. 0.80
   2 ?   -3.2   0.0       3.8   4.9e+03     196     211 ..     143     162 ..     121     179 .. 0.69
   3 ?   -3.4   0.0       4.2   5.4e+03     151     170 ..     213     232 ..     212     247 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.5e-05
                EEEECTSHHHHHHHHHHHHTT....EEEE CS
         DAO  2 vviiGGGiiGlstAyeLarrg....Vtll 26
                v iiG+G +G+s+Ay+L  +      +l+
  CTQ28070.1  8 VMIIGAGNVGASAAYALLNQSiceeLILV 36
                89***************876555565555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.8
                 EEE--GGGHH..HH.HTT.C CS
         DAO 196 vVnaaGawsd..ll.gll.k 211
                  V+ +G+w d   l +ll +
  CTQ28070.1 143 QVLGTGVWLDttRLrRLLaQ 162
                 47778888775544333333 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.2
                 HHHHHHHHTT-EEEESECEE CS
         DAO 151 alaraaealGveilegtevt 170
                 a+a+++++lG ei+ g   t
  CTQ28070.1 213 AMADKVRKLGFEIYAGKGCT 232
                 79999999999999986555 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   2.9e-05     0.037      27      99 ..       4      81 ..       1     104 [. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.9e-05
                 ---EEEEESTSHHHHHHHHHH..HHTT-EEEEEESSHHHHHHHHH.TTTCECEE..HCHHHHHHHHHHHH-SEEEE-- CS
  AlaDh_PNT_C 27 epakvlviGgGvaGlqAiata..kglgakVtvlDvrparleqles.lgakfvev..lksqeellaeavkeadvvigtv 99
                 ++ kv++iG+G +G +A+ +   +++  +  ++D++++r+e + + l      +  ++  +   a+ ++++d+ + tv
   CTQ28070.1  4 KARKVMIIGAGNVGASAAYALlnQSICEELILVDLNQQRAEAHAQdLSDAAAYLpgMMTISTREASDCADVDIAVITV 81
                 5679*************97652267899999*******9999887644432222335555555666677777766665 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   7.6e-05     0.097       2      71 ..       4      99 ..       3     123 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.6e-05
                 TTEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEET..........TEEEESCHHHHHHHCTTTEEEEES.................- CS
  CoA_binding  2 kdtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevl..........glpvyksvdeleektevdvavitv.................P 71
                 k  kv++iGag+ g   +y   ++  ++  ++++ n + +    +          g++   s +e+++  +vd+avitv                  
   CTQ28070.1  4 KARKVMIIGAGNVGASAAYALLNQSICEELILVDLNQQRAEAHAQdlsdaaaylpGMMTI-STREASDCADVDIAVITVsggalrpgqsrldeltsT 99
                 788***********9999********************8877777899****99888888.9999999999********666555444444444444 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   5.2e-05     0.067       1      56 [.       7      64 ..       7      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.2e-05
                EEEEE--SCCHHHHHHHHHHTT-..EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS- CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagl..eVvlvdiseealekalekieksleklvekgklk 56
                kv +iGaG +Ga+ a++++++ +  e  lvd +++++e+ ++ +++  + l     ++
  CTQ28070.1  7 KVMIIGAGNVGASAAYALLNQSIceELILVDLNQQRAEAHAQDLSDAAAYLPGMMTIS 64
                699*****************977558999**********9999998766655544444 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.6e-05     0.085       2      70 ..       7      81 ..       6      99 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.6e-05
                  EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE.EESS......HHHHHTCTTESEEEE-S CS
  GFO_IDH_MocA  2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve.aysd......leelladpeidavivat 70
                  +v iiGaG++g   + +l +++ +ee++ l+d +++raea a+ +  + ay         +e ++  ++d++++++
    CTQ28070.1  7 KVMIIGAGNVGASAAYALLNQSICEELI-LVDLNQQRAEAHAQDLSDAaAYLPgmmtisTREASDCADVDIAVITV 81
                  799*******999999999999999999.9*********9977665443443344443344444444777777766 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   9.8e-05      0.13       1      44 [.       8      50 ..       8      86 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.8e-05
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka 44
                     v+iiGaG+vG ++a  l++++   +e++++d +++++ea a+++
       CTQ28070.1  8 VMIIGAGNVGASAAYALLNQSIC-EELILVDLNQQRAEAHAQDL 50
                     78*************99998766.5***********99998876 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015      0.19       1      76 [.       8      81 ..       8     105 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
                EEEES-SHHHHHHHHHHHH.HTHC.EEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-S CS
        ApbA  1 iailGaGaiGsllaakLak.agad.vtlilrsr.rlealkknGlrltseggeeilrppealsaeekselepidlvivtv 76
                + i+GaG +G   a+ L +   ++  +l++ ++ r+ea  +   +l++     +l+   ++s+ e s+ +++d+ ++tv
  CTQ28070.1  8 VMIIGAGNVGASAAYALLNqSICEeLILVDLNQqRAEAHAQ---DLSDAA--AYLPGMMTISTREASDCADVDIAVITV 81
                68***************886888757777766655554444...444443..444444444444555555777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2603.62
//
Query:       CTQ28071.1  [L=160]
Description: IAA acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-14   53.4   0.0    3.4e-14   53.1   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    6.1e-11   42.6   0.0    7.4e-11   42.3   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    4.2e-09   36.4   0.0    5.6e-09   36.0   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.1e-06   27.6   0.0    3.2e-06   27.0   0.0    1.3  1  FR47             FR47-like protein
     0.0095   16.1   0.0      0.019   15.1   0.0    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   9.6e-18   3.4e-14      28     117 .]      39     129 ..       9     129 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 9.6e-18
                     HHSTTCEEEEEEET....TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  28 fsleaegllvaeed....geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     +s+ ++ +++a+ +    ge +G+  +    +   g +++ +++++p++rg+ lG +Ll ale +ar++ ++ + l++  +++aai+lY++ G+
      CTQ28071.1  39 LSQLPPQTVIALAIrspqGEAVGCGAIVLSEE---GFGEMKRVYIDPQHRGQQLGEKLLAALEAKARQRDCHTLRLETGIHQHAAIALYTRNGY 129
                     33444455554444456699*****9999999...********************************************************998 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   2.1e-14   7.4e-11      12      75 ..      57     130 ..      25     131 .. 0.72

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 2.1e-14
                     TEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH...TT..SEEEEEEEEE....THHHHHHHHHHTTEE CS
  Acetyltransf_7  12 gkivGfialslld...aeitrlaVdpeyrgkGiGraLlea...ae..kgiileqlel....naekaikfYeklGFe 75 
                     g+ vG+ a++l++   +e +r+++dp++rg+ +G +Ll+a   ++  + ++  +l+l    ++++ai++Y ++G++
      CTQ28071.1  57 GEAVGCGAIVLSEegfGEMKRVYIDPQHRGQQLGEKLLAAleaKArqRDCH--TLRLetgiHQHAAIALYTRNGYQ 130
                     777888888888777777777*****************9755411444454..2233213322389*********8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.6e-12   5.6e-09      40     108 ..      57     131 ..      39     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 1.6e-12
  Acetyltransf_10  40 gkivGviel..rdgs..hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFka 108
                      g+ vG++++  ++++  ++ ++++dp++rgq +g++Ll a+e++a++++ ++ +l+   ++ +a+++Y + G+++
       CTQ28071.1  57 GEAVGCGAIvlSEEGfgEMKRVYIDPQHRGQQLGEKLLAALEAKARQRDCHTlRLETGIHQhAAIALYTRNGYQT 131
                      67776665552444489**********************************999988877779**********96 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   8.8e-10   3.2e-06      18      80 ..      68     132 ..      53     136 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 8.8e-10
                 E-TT.SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-.S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  18 rkdg.gelgalqvlpehrrrGlgsrlvkalakeiaerg.ktvllvvvasNtpsirlyeklGfeki 80 
                  ++g ge+  ++++p+hr++ lg +l +al ++ ++r+ +t+ l ++++ +++i+ly++ G++ +
  CTQ28071.1  68 SEEGfGEMKRVYIDPQHRGQQLGEKLLAALEAKARQRDcHTLRLETGIHQHAAIALYTRNGYQTR 132
                 44555*******************************663778899*****************986 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.3e-06     0.019      25      57 ..      73     105 ..      51     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.3e-06
  Acetyltransf_CG  25 ldfthTeVpeelrGkGiAkkLvkaalddareeg 57 
                       ++  +++++++rG+ +++kL  a   +ar+++
       CTQ28071.1  73 GEMKRVYIDPQHRGQQLGEKLLAALEAKARQRD 105
                      578899**********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1403.34
//
Query:       CTQ28072.1  [L=292]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-43  148.7   0.4    2.1e-43  148.2   0.4    1.2  1  LysR_substrate  LysR substrate binding domain
    9.6e-18   63.9   2.1      1e-17   63.8   0.5    1.9  2  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.2   0.4   2.3e-47   2.1e-43       2     206 ..      85     284 ..      84     287 .. 0.98

  Alignments for each domain:
  == domain 1  score: 148.2 bits;  conditional E-value: 2.3e-47
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                     ++++g +++g  +++a+ ++p  la f +ryP+++l l++g+s +++d+++eg l +a++ gp+ ++gle  p++ e++++va+ +h     +p+
      CTQ28072.1  85 DEPQGLFSLGSLESTAAVRIPSTLAHFNQRYPKIHLALSTGPSGTMIDGVLEGALSAAFVDGPLVHPGLEGLPVFPEEMMIVAPYGH-----API 174
                     689************************************************************************************.....688 PP

                     .CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEET CS
  LysR_substrate  97 .sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrk 189
                      +++++ + +   +++++++r+++e ++++ + +p + +e++s++ +la+v aG G+al+prs+++  + + +++a+pl+e + +  +++lv+r+
      CTQ28072.1 175 tRASEVNGANVYAFRANCSYRRHFESWFHADRATPGRIHEMESYHGMLACVIAGAGLALIPRSMLESMPGHQQVSAWPLAE-EWRwLTTWLVWRR 268
                     899******************************************************************************.9999********* PP

                     TCCCHHHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidflre 206
                     g   +++++afi++l e
      CTQ28072.1 269 GA-KTRQLEAFIALLNE 284
                     *9.**********9977 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.5   1.2e-21     1e-17       1      59 [.       3      61 ..       3      62 .. 0.97
   2 ?   -1.8   0.0      0.35   3.2e+03       2      12 ..     273     283 ..     272     286 .. 0.82

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 1.2e-21
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l ql+ f ava +gs+t+AA++++  ++ ++ +i++LE+ lgv+Lf+R +++lrL +aG
  CTQ28072.1  3 LTQLEMFNAVASTGSITQAAQKVHRVPSNLTTRIRQLEADLGVELFIRENQRLRLSPAG 61
                679*******************************************************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.35
                 HHHHHHHHHHH CS
       HTH_1   2 rqlrlfvavae 12 
                 rql++f+a+  
  CTQ28072.1 273 RQLEAFIALLN 283
                 89****99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2510.49
//
Query:       CTQ28073.1  [L=462]
Description: putative aldehyde dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.9e-139  464.5   1.1   3.6e-139  464.2   1.1    1.0  1  Aldedh         Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.036   14.1   2.9      0.086   12.9   0.1    2.7  3  baeRF_family2  Bacterial archaeo-eukaryotic release factor fa


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  464.2   1.1    4e-143  3.6e-139       9     462 .]       9     457 ..       3     457 .. 0.97

  Alignments for each domain:
  == domain 1  score: 464.2 bits;  conditional E-value: 4e-143
                 EEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH CS
      Aldedh   9 ievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaekl 107
                   ++nP+tgev+ + p a++ +vdaa+a A++ +++w+++p+++Ra+ Lr++ ++l++r ee a+++tle+Gkp+a+ar+ev+++++ +++yae+   +
  CTQ28073.1   9 AVSVNPTTGEVVSSLPWASEREVDAAIALAAAGYRQWRQTPLADRADALRRIGAALRARGEEVAQMITLEMGKPIAQARGEVAKSANLCDWYAEHGPAM 107
                 5689********************************************************************************************996 PP

                 SEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-TTE CS
      Aldedh 108 egevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehpev 206
                   + ++  e+++a++ ++PlG ++a++PWNfP+  +++ ++p l+aGN+ +lK a+++  sa ll e+f++aglP+gv+  v+ ++ +  +++++++++
  CTQ28073.1 108 LATEATLVENNQAVIEYRPLGAILAVMPWNFPVWQVMRGAVPILLAGNSYLLKHAPNVMGSARLLGEIFAAAGLPDGVFGWVNATN-DGVSQIINDDRI 205
                 6655556579************************************************************************9955.6667789999** PP

                 SEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TTSTT CS
      Aldedh 207 dkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdplded 305
                 ++v+ tGs++ g+ i ++a++ lk+++lElGG +p+ivl+daDld+av+a+v g + n+GQvC a +r++++ +i+++f+ k+v+a+++lk+gdp+de+
  CTQ28073.1 206 AAVTVTGSVRAGKAIGAQAGAALKKCVLELGGSDPFIVLNDADLDEAVKAAVSGRYQNSGQVCAASKRFILEAGIAEAFTRKFVDAVAALKMGDPRDEQ 304
                 *************************************************************************************************** PP

                 -SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEEE-S CS
      Aldedh 306 tdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagvftk 404
                 + vGP+++ + +++++++v  + +ega+lllG    e+ +  g++++Ptvl nvt  m+ +++E+FGPV+++++++d ++a+++aNd+e+GL+a+v+t+
  CTQ28073.1 305 NYVGPMARFDLRDELHQQVTATLDEGATLLLGA---EKIEGAGNYYAPTVLGNVTAGMTGFRQELFGPVATLTTARDADHALALANDSEFGLSATVYTT 400
                 *******************************99...7899*********************************************************** PP

                 BHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 405 dleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 d+++a+r+a++le+G v +N +++++a   +fgGvk+Sg+Gre ++ gl+e+++ +tv
  CTQ28073.1 401 DEAQAQRFARELECGGVFLNGYCASDARV-AFGGVKKSGFGRELSHFGLHEFCNAQTV 457
                 *****************************.************************9987 PP

>> baeRF_family2  Bacterial archaeo-eukaryotic release factor family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.14   1.2e+03     115     145 ..      26      56 ..      17      59 .. 0.87
   2 ?   12.9   0.1   9.5e-06     0.086      65     134 ..     194     263 ..     189     274 .. 0.90
   3 ?   -1.2   0.0      0.21   1.9e+03      87     103 ..     311     327 ..     309     331 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.14
  baeRF_family2 115 adrealaeevaealaerrarrreevlerfra 145
                    a+++++++++a a+a++r+ r++ +++r  a
     CTQ28073.1  26 ASEREVDAAIALAAAGYRQWRQTPLADRADA 56 
                    6789999*************99999999765 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 9.5e-06
  baeRF_family2  65 eevdrlvresgaelVvlaGDvrarsllrdeLpervrelvvevegggraagadrealaeevaealaerrar 134
                    + v +++ + +  +V ++G vra +++ ++ +++++++v e+ g       ++++l+e+v++a+ +r ++
     CTQ28073.1 194 DGVSQIINDDRIAAVTVTGSVRAGKAIGAQAGAALKKCVLELGGSDPFIVLNDADLDEAVKAAVSGRYQN 263
                    5688999999*********************************9999999*************9998766 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.21
  baeRF_family2  87 arsllrdeLpervrelv 103
                    ar +lrdeL+++v + +
     CTQ28073.1 311 ARFDLRDELHQQVTATL 327
                    78899999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 3922.57
//
Query:       CTQ28074.1  [L=308]
Description: putative glutaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.2e-113  377.3   0.0   4.8e-113  377.1   0.0    1.0  1  Glutaminase  Glutaminase
  ------ inclusion threshold ------
      0.064   13.1   0.0       0.14   12.1   0.0    1.5  1  30K_MP_core  Core domain of 30K viral movement proteins


Domain annotation for each model (and alignments):
>> Glutaminase  Glutaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  377.1   0.0  5.3e-117  4.8e-113       1     286 []      24     308 .]      24     308 .] 0.98

  Alignments for each domain:
  == domain 1  score: 377.1 bits;  conditional E-value: 5.3e-117
                  SB--SSSHHHCTS-TT--EEEEEETTSEEEEEESTT--EE-GGGHHHHHHHHHHHHH-HHHHHCCC-S---SS-TT-HHHHHCTTT--C-TTSHHHHH CS
  Glutaminase   1 GkvadyipeLakvdpdkfgiavvtvdgqvlsaGdaevkFtiqSiskvftlalaleelgeeevlervgvepsgeafnsivqleeekgkprNpminaGAi 98 
                  Gkvadyip+La+v+ dk+gia+ tvdgq++ aGda+++F+iqSiskv++l++a+++++eee+++rvg++psg++fns++qle e+gkprNp+inaGA+
   CTQ28074.1  24 GKVADYIPALASVSGDKLGIAISTVDGQHFAAGDAHERFSIQSISKVLSLVVAMNHYQEEEIWQRVGKDPSGQPFNSLLQLEIEQGKPRNPFINAGAL 121
                  9************************************************************************************************* PP

                  HHHHHSSSSSHHHHHHHHHHHHHHHHST.T-EE-HHHHHHHHCC-HHHHHHHHHHHHCT--SS-HHHHHHHHHHHCTEEE-HHHHHHHHHHHHTTTEE CS
  Glutaminase  99 vvasllkgesaeerferileflrklagreklsldeevakseketadrnralayllkskgvleedveevldlYfqqcsievtcedlavlaatlangGvn 196
                  vv+++l++ + ++  +r+le++r+l+g  ++ +d  va+se e++ rn+a+a+l+ks+g++++dv +vl+ Yf+ cs+e++c +la+ +++la++G+ 
   CTQ28074.1 122 VVCDMLQS-RLSAPRQRMLEIVRRLSGVADIAYDPVVARSEFEHSARNAAIAWLMKSFGNFHNDVATVLQNYFHYCSLEMSCVELARTFLFLADRGIA 218
                  ****8776.555567*********************************************************************************** PP

                  TTTTEE-S-HHHHHHHHHHHHHHTTGGGHHHHHHHT-S-EEE-TTSEEEEEETTTCEEEEE-S-B-TTSSBHHHHHHHHHHHHHHT--TT CS
  Glutaminase 197 pltgervlskesvrrvlalmltcGmYdasgefavkvGlPaKSGVsGgilavvpgklgiavfSPrLdekgnSvrGvklleelseelnlsiF 286
                  p  +  v+ + + r+v+alm+t GmY+++gefa++vGlPaKSGV+Ggi+a+vp++++iav+SP+Ld++gnS++Gv++le+l+++++ s+F
   CTQ28074.1 219 PHLDAPVIAPIQSRQVNALMMTSGMYQNAGEFAWRVGLPAKSGVGGGIVAIVPQEMAIAVWSPELDDAGNSLAGVAMLEKLTQRMGRSVF 308
                  **************************************************************************************9998 PP

>> 30K_MP_core  Core domain of 30K viral movement proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.5e-05      0.14      27      87 ..      25      83 ..      14      96 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.5e-05
  30K_MP_core 27 kvqcmyiplfsrvdgdngeitvsliddgkeaagqdpiiqsitfdasqmamvelsmnffvek 87
                 kv + yip ++ v gd+  i++s +d  + aag+     si    s++  + ++mn + e 
   CTQ28074.1 25 KV-ADYIPALASVSGDKLGIAISTVDGQHFAAGDAHERFSIQS-ISKVLSLVVAMNHYQEE 83
                 55.46*********************99999998876666654.34444445778877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2292.91
//
Query:       CTQ28075.1  [L=122]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-51  172.3   0.0    2.8e-51  172.1   0.0    1.0  1  DUF4186   Domain of unknown function (DUF4186)


Domain annotation for each model (and alignments):
>> DUF4186  Domain of unknown function (DUF4186)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.1   0.0   1.5e-55   2.8e-51       2     108 ..       6     112 ..       5     113 .. 0.99

  Alignments for each domain:
  == domain 1  score: 172.1 bits;  conditional E-value: 1.5e-55
     DUF4186   2 ellerlskskfrskFklkekdkeyikekglekikehardliakrlapaependgkqtPmrghpvfiaqHAtatCCRgclekwhkipkgreLteeeqeyi 100
                 +l++rl++s+frs+F+l  k+++y+ +kg e+i++ha+d+i++rlapa+p ndgkqtPmrghpvfiaqHAtatCCRgclekwh ip+gr+L+e eq+yi
  CTQ28075.1   6 RLFARLARSTFRSRFRLGGKERQYCLDKGPEVIDRHAADFIRQRLAPAAPINDGKQTPMRGHPVFIAQHATATCCRGCLEKWHAIPHGRALSEPEQDYI 104
                 78************************************************************************************************* PP

     DUF4186 101 vevimewi 108
                 v+vi++w+
  CTQ28075.1 105 VQVIHRWL 112
                 *******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 958.23
//
Query:       CTQ28076.1  [L=474]
Description: putative transport protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-29  100.7   0.1    9.5e-29  100.2   0.1    1.2  1  GGDEF     Diguanylate cyclase, GGDEF domain


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.1   5.3e-33   9.5e-29       1     161 []     305     463 ..     305     463 .. 0.89

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 5.3e-33
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a++D  T++++R+ l e l+++   a   +k l+v++ld+d Fk++nd++Gh+ GD vL ++a++ ++ + ++ +vaR+gg+eFa+     s ++   l
  CTQ28076.1 305 ADFDFQTRVYSRSGLSEALKRQTLPA---DKLLTVMVLDIDGFKRVNDALGHEGGDCVLTQFAQQVRQLVGEQGMVARIGGEEFAVAAVVDSAQQGYLL 400
                 57899******************999...579******************************************************9888888889999 PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE.....-TTS-HHHHHHHHHHHHHHHHHCTSSC CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialap...peegedleellkeAdealyeaKkagrnr 161
                 ae ir+ ++ +  p+ l+++++++tis+G  + +    + +e +++ll +Ad+ + +aK++grn+
  CTQ28076.1 401 AEKIRHGVESQ--PFGLGQNPIHLTISLGLETREvghARITELFNQLLLAADDEMVKAKQSGRNQ 463
                 99999999976..5568888999******998852223445667788889*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3808.33
//
Query:       CTQ28077.1  [L=176]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-12   46.9   0.0    3.3e-12   46.7   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.2e-12   46.5   0.0    4.1e-12   46.1   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.2e-08   35.3   0.0    1.6e-08   34.8   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    2.4e-05   24.4   0.0    5.2e-05   23.3   0.0    1.6  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
    5.7e-05   23.3   0.0    7.8e-05   22.9   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    9.2e-05   22.3   0.0    0.00015   21.7   0.0    1.3  1  FR47             FR47-like protein
     0.0041   16.8   0.1     0.0049   16.6   0.1    1.1  1  PanZ             Acetyltransferase (GNAT) domain, PanZ
     0.0054   16.8   0.0     0.0089   16.1   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
      0.032   13.3   0.0       0.42    9.6   0.0    2.0  2  Abhydrolase_9    Alpha/beta-hydrolase family
       0.12   12.3   0.1       0.25   11.4   0.1    1.5  1  Acetyltransf_13  ESCO1/2 acetyl-transferase
        0.2   11.6   0.0       0.24   11.4   0.0    1.2  1  Anticodon_1      Anticodon-binding domain of tRNA


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0     2e-15   3.3e-12      28     117 .]      56     148 ..      25     148 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 2e-15
                     HHSTTCEEEE.EEET..TEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  28 fsleaegllv.aeed..geliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                      s  a++ +v a +d  ++++G+++l   ++ + +++a +  l V+ + r++G+++aL+ +le++ar+e  + +vl++ ++  +a  +Y ++G+
      CTQ28077.1  56 DSVAAGERIVlAAFDaeERPVGTVQLITSQPeNQPHRADVAKLLVHQNVRRQGIAQALMSELERIARRERKTVLVLDT-ATGSGAEQFYARCGW 148
                     3445554444466666688*****99888888999**********************************998889988.7789******99**6 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   2.5e-15   4.1e-12      24     111 ..      56     153 ..      41     166 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 2.5e-15
  Acetyltransf_10  24 erieegealllvaeeg.gkivGvielrdgs........hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYeklGFk 107
                      + +++ge ++l+a++  +++vG+++l +++         ++ l V+++ r+qGi++aL+ ++e+ a++++  +  l     + a++fY ++G++
       CTQ28077.1  56 DSVAAGERIVLAAFDAeERPVGTVQLITSQpenqphraDVAKLLVHQNVRRQGIAQALMSELERIARRERKTVlVLDTATGSGAEQFYARCGWE 149
                      4454555555655554399*****995555589999999***************************9998887777777777************ PP

  Acetyltransf_10 108 avge 111
                      +vge
       CTQ28077.1 150 KVGE 153
                      *987 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   9.9e-12   1.6e-08      11      76 .]      70     150 ..      45     150 .. 0.70

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 9.9e-12
                     T..TEEEEEEEEEEES.......TCTEEEEE-GGGTTSSHHHHHHHH..TT....SEEEEE.EEEETHH...HHHHHHHHTTEEE CS
  Acetyltransf_7  11 d..gkivGfialslld.......aeitrlaVdpeyrgkGiGraLlea..ae....kgiile.qlelnae...kaikfYeklGFee 76 
                     d  +++vG++ l  ++       a+  +l V+++ r++Gi++aL+    ++    +    + +l l++     a++fY+++G+e+
      CTQ28077.1  70 DaeERPVGTVQLITSQpenqphrADVAKLLVHQNVRRQGIAQALMSEleRIarreR----KtVLVLDTAtgsGAEQFYARCGWEK 150
                     235789999998888898876666666699***************85341133211....2223333323468999******985 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         2   3.2e+03      97     118 ..      24      45 ..      22      53 .. 0.80
   2 !   23.3   0.0   3.2e-08   5.2e-05      39     127 ..      60     150 ..      34     151 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2
                     HHHHHHHHTT--EEEE--SSHH CS
  Acetyltransf_9  97 raleemreegqplsllfPssip 118
                     + l+ +   g+++s+  P++++
      CTQ28077.1  24 EILASCVNGGASVSFMLPFAPQ 45 
                     5677888889999999998765 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 3.2e-08
                     HTTSEEEEEEE.TTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--....SSHHHHHTTT-EE CS
  Acetyltransf_9  39 leesrvlgaed.ngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlaraleemreegqplsllfP....ssipiYrrfGyei 127
                      +e  vl a+d +++ vg+++l++ +   p+++ + a v+   v+ + r++g++++L+ ++ + +r e++++ +l       ++++Y r G+e+
      CTQ28077.1  60 AGERIVLAAFDaEERPVGTVQLITSQ---PENQPHRADVAKLLVHQNVRRQGIAQALMSELERIARRERKTVLVLDTatgsGAEQFYARCGWEK 150
                     346789999999999******99876...88888889999*************************9998887777553655457********97 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.8e-08   7.8e-05      39     142 ..      53     156 ..      42     160 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.8e-08
  Acetyltransf_4  39 kflealdsekeyvflvae.sdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkal 132
                     +  +++ +++++v+ +++ ++r vG+ +l   ++  + + a +  +l+++  + +g++++l+  le ++++   + l+  +a + + + qf+++ 
      CTQ28077.1  53 RTADSVAAGERIVLAAFDaEERPVGTVQLITSQPENQPHRADVAKLLVHQNVRRQGIAQALMSELERIARRERKTVLVLDTA-TGSGAEQFYARC 146
                     3334447899******************98666666*******99999999******************9999999999999.999********* PP

  Acetyltransf_4 133 GFelvgifkk 142
                     G+e+vg+  +
      CTQ28077.1 147 GWEKVGEIPR 156
                     ******8755 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0     9e-08   0.00015      24      80 ..      95     151 ..      77     156 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 9e-08
                 EEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  24 lgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfeki 80 
                 +  l v++++rr+G ++ l ++l +  +++ ktvl++  a+ + ++++y + G+ek 
  CTQ28077.1  95 VAKLLVHQNVRRQGIAQALMSELERIARRERKTVLVLDTATGSGAEQFYARCGWEKV 151
                 56799******************887777999999999****************986 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1     3e-06    0.0049      24     123 ..      45     151 ..      24     156 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3e-06
        PanZ  24 aqsaealea...alteegalfaarFN..dRlLgAvkveledk.....eaelsdlcVRevTRrRGVgsyLleearrqaPevkswvlaeedvkeldlavlq 112
                 +++ +++++    ++++++++ a F   +R  g v++ +++       a + +l V +  Rr G+++ L+ e  r a + +++vl   + +    + ++
  CTQ28077.1  45 QTAITFWQRtadSVAAGERIVLAAFDaeERPVGTVQLITSQPenqphRADVAKLLVHQNVRRQGIAQALMSELERIARRERKTVLVLDTAT---GSGAE 140
                 55555665511146678999999996447999**9985544322344799********************999999988888888877744...56778 PP

        PanZ 113 aflealgfaae 123
                 +f +++g+++ 
  CTQ28077.1 141 QFYARCGWEKV 151
                 88888887665 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.4e-06    0.0089      20      62 ..      88     130 ..      65     132 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.4e-06
  Acetyltransf_CG  20 rkegvldfthTeVpeelrGkGiAkkLvkaalddareeglkvvp 62 
                      ++ ++ d+ +  V++ +r++GiA++L+ +    ar+e+++v +
       CTQ28077.1  88 NQPHRADVAKLLVHQNVRRQGIAQALMSELERIARRERKTVLV 130
                      55668999999**************************999975 PP

>> Abhydrolase_9  Alpha/beta-hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.055        89     236     253 ..      42      61 ..      30      93 .. 0.79
   2 ?    9.6   0.0   0.00026      0.42      14      44 ..     107     138 ..      99     176 .] 0.79

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.055
  Abhydrolase_9 236 wvP..vvtflqvalDlavat 253
                    + P   +tf+q ++D ++a 
     CTQ28077.1  42 FAPqtAITFWQRTADSVAAG 61 
                    5553358********98876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00026
  Abhydrolase_9  14 eeraelvvaeleRtgafdRkvl.vvvtttGtG 44 
                    +  a+ +++eleR    +Rk++ v+ t+tG+G
     CTQ28077.1 107 QGIAQALMSELERIARRERKTVlVLDTATGSG 138
                    5668999**********999651556789*98 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00015      0.25       7      27 ..      95     115 ..      92     125 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
  Acetyltransf_13   7 isriWvssshRrkgiAtkLld 27 
                      + ++ v+++ Rr+giA++L+ 
       CTQ28077.1  95 VAKLLVHQNVRRQGIAQALMS 115
                      56788**************96 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015      0.24      76     115 ..      38      78 ..      13     129 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
  Anticodon_1  76 llaPfmPfitEelwqreeeelgkkesimlaewpekaeel.e 115
                   + Pf+P+++ + wqr ++++   e i+la++ +++ +  +
   CTQ28077.1  38 FMLPFAPQTAITFWQRTADSVAAGERIVLAAFDAEERPVgT 78 
                  577*************888888889999**99853333342 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1441.96
//
Query:       CTQ28078.1  [L=483]
Description: altronate oxidoreductase, NAD-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-76  254.7   0.0    1.1e-75  254.3   0.0    1.1  1  Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
    1.1e-39  136.0   0.0    8.3e-39  133.2   0.0    2.3  3  Mannitol_dh    Mannitol dehydrogenase Rossmann domain


Domain annotation for each model (and alignments):
>> Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.3   0.0   1.2e-79   1.1e-75       2     245 ..     204     458 ..     203     459 .. 0.97

  Alignments for each domain:
  == domain 1  score: 254.3 bits;  conditional E-value: 1.2e-79
  Mannitol_dh_C   2 svgfpntmVDRIvpaatddelakleeelgveDplavtvEpFiqWviednfvkgrpe...lelvgvelvedvepyeerKlriLNggHaalaylgala 94 
                    +++f++t+VDRIv+++++de+++le+++g++D++ +t+E+F+ +vi+++++   +    + +++v +v+d++py+erK++iLNg+H+al++++++a
     CTQ28078.1 204 ANTFCSTLVDRIVTGYPRDEVEALEAQTGYKDAFLDTAEHFYLFVIQGPASLEAELrldKLPLNVRIVDDIKPYKERKVAILNGAHTALVPVAFQA 299
                    589**********************************************99875555558889********************************* PP

  Mannitol_dh_C  95 GyqtiheamkdeeiraivkkllteevapllkkvdeqdleeYadkiieRFsNpyikdtvervaldGsqklpkrilpslrrlika.gtlpellalgva 189
                    G++t+ eam+d+ei+a+v+k++++e++p+l+  ++++l ++a+++++RF+Npyik+++ ++al+G++k ++rilp+l + +ka g lp +l++++a
     CTQ28078.1 300 GIDTVGEAMNDAEICAFVEKAIYDEIIPVLDL-PRDELVSFASAVTGRFRNPYIKHQLLSIALNGMTKYRTRILPQLLAGQKAhGALPPRLTFALA 394
                    ********************************.*************************************************99************ PP

  Mannitol_dh_C 190 lwirylegvaeggnyiekeDpqleelqe........aallakervkavlaekeileedlaqnke 245
                    ++i++++g+++g+ y+ ++D+ +  +++         ++++ e v+avl+  +++++dl q++ 
     CTQ28078.1 395 ALIAFYRGERDGESYPVQDDADWISRYQtlwarhrdGQMSTRELVTAVLSVADHWQQDLSQIPG 458
                    **************************999****99999*********************99875 PP

>> Mannitol_dh  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2   0.0   9.3e-43   8.3e-39       2     150 ..      17     172 ..      16     173 .. 0.98
   2 ?   -1.1   0.0      0.22   1.9e+03      16      58 ..     195     239 ..     195     251 .. 0.73
   3 ?   -1.7   0.0      0.33   2.9e+03      71     116 ..     271     312 ..     254     344 .. 0.70

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 9.3e-43
                  EEEEES-SHHHHHTHHHHHHHHTT.--TT-EEEEEE-STTHHHHHHHTTTT-EEEEE-S.....SS---EEEE--EEEEEEGGG-HHHHHHHHTSTT- CS
  Mannitol_dh   2 rivhfGaGnfhRahqayiddLlae.egldwgivevnlrevdareaLkaqdelyvviekg.....eeskearlvgsvnavlsveedlealieamaePei 93 
                  ri++fG Gnf Ra++++++dLl+e ++l+ giv v+++ +d++++L++qd+ly++i++g     e++++arl++svn+ +s+++d +a+++++++Pe+
   CTQ28078.1  17 RIIQFGEGNFLRAFVDWQIDLLNEhTDLNAGIVVVRPIATDFPPSLNTQDGLYTTIIRGlneqgEAVSDARLIRSVNREISAYADFDAFLRLAHNPEM 114
                  89*******************************************************966889999******************************** PP

                  -EEEE---TTTBE.TTTEB-TTSHHHHHHHH-TTHHHHHHHHHHHTT----EEEE-SS CS
  Mannitol_dh  94 rivsltvtekGid.atgeletdlpaiaadlakpellvealkrrraaglkpltiisCdn 150
                  r+v++++te+Gi+ ++g+ ++d+p ++++++ ++ll+e+ +++  a +k++ ii+C+ 
   CTQ28078.1 115 RFVFSNTTEAGISyHAGDRFDDAPPVSYPAKLTRLLFERYQHFAGAADKGWVIIPCEL 172
                  ********************************************************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.22
                  HHHHHHHHTT--TT-EEEE..EE-STTHHHHHHHTTTT-EEEEE- CS
  Mannitol_dh  16 qayiddLlaeegldwgive..vnlrevdareaLkaqdelyvviek 58 
                  qa+i  L + + + +++v+  v     d++eaL+aq +++   ++
   CTQ28078.1 195 QAFITWLTSANTFCSTLVDriVTGYPRDEVEALEAQTGYKDAFLD 239
                  5678888888888888887334444566699*****999866665 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.33
                  EEEEEEGGG-HHHHHHHHTSTT--EEEE---TTTBETTTEB-TTSH CS
  Mannitol_dh  71 vnavlsveedlealieamaePeirivsltvtekGidatgeletdlp 116
                  v ++ + +e+  a+++ ++    ++v ++  + Gid+ ge ++d++
   CTQ28078.1 271 VDDIKPYKERKVAILNGAHT---ALVPVAFQA-GIDTVGEAMNDAE 312
                  55555555555555555554...777777766.7777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3509.49
//
Query:       CTQ28079.1  [L=148]
Description: GCN5-related N-acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-12   47.5   0.0    2.2e-12   47.2   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.7e-09   36.9   0.0    4.6e-09   36.6   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    5.3e-07   29.6   0.0    6.5e-07   29.3   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    4.4e-05   23.4   0.0    7.3e-05   22.7   0.0    1.4  1  FR47             FR47-like protein
    0.00011   22.9   0.0    0.00015   22.4   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
      0.002   18.2   0.0     0.0029   17.7   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
       0.01   15.5   0.0      0.015   15.0   0.0    1.3  1  NAT              NAT, N-acetyltransferase, of N-acetylglutama
      0.047   13.7   0.1      0.081   13.0   0.1    1.5  1  Nop10p           Nucleolar RNA-binding protein, Nop10p family


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   9.9e-16   2.2e-12      23     113 ..      38     131 ..      14     134 .. 0.75

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 9.9e-16
                     HHHHHHHSTTCEEEE..EEETTEEEEEEEEEEEET..TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHH CS
  Acetyltransf_1  23 efeesfsleaegllv..aeedgeliGfisllkipd..ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYe 113
                        ++  + +++ l   a  d+ ++Gf+ +         ++ +y+e+l+V+p++rg+G+++++++ l  +  ++g  +++++++ dn +a++lY 
      CTQ28079.1  38 CTWQRMLDVNSSVLGrvAVVDDAVVGFAICVLHEGtwVTTPICYLEDLFVDPAFRGQGIARTMIKSLQSEGADKGWSRLYWHTRRDN-PARHLYD 131
                     2222233444433334589999******9888888997789****************************************999999.*****95 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0     2e-12   4.6e-09       7      70 ..      54     131 ..      23     133 .. 0.74

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2e-12
                     EEEETTEEEEEEEEEEES........TCTEEEEE-GGGTTSSHHHHHHH.HTT.....SEEE..EE.EEEETHHHHHHHHH CS
  Acetyltransf_7   7 VaeddgkivGfialslld........aeitrlaVdpeyrgkGiGraLle.aae.....kgii..le.qlelnaekaikfYe 70 
                     Va  d+ +vGf++++l++        ++++ l+Vdp++rg+Gi+r +++ + +     kg    l+ +++ ++ +a+++Y 
      CTQ28079.1  54 VAVVDDAVVGFAICVLHEgtwvttpiCYLEDLFVDPAFRGQGIARTMIKsL-QsegadKG-WsrLYwHTRRDN-PARHLYD 131
                     56668999****9999999999977777777*****************943.23233444.122333333333.8999995 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.9e-10   6.5e-07      21     102 ..      39     131 ..      22     134 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2.9e-10
  Acetyltransf_10  21 alrerie.egealllvaeeggkivGvi.el.rdgs.......hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYe 102
                      +++++++ ++++l  va +++ +vG++  +  +g        +++ lfVdp++rgqGi++ +++ +++e  ++g +    + + ++ a+ +Y 
       CTQ28079.1  39 TWQRMLDvNSSVLGRVAVVDDAVVGFAiCVlHEGTwvttpicYLEDLFVDPAFRGQGIARTMIKSLQSEGADKGWSRlYWHTRRDNPARHLYD 131
                      567777558888889999*******9974435555899999****************************656766666888888888888886 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.3e-08   7.3e-05      17      74 ..      75     132 ..      70     144 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.3e-08
                 EE-TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHH CS
        FR47  17 lrkdggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyek 74 
                 ++ ++ +l  l v+p +r++G ++ ++k+l  e a +g   l +    ++p+++ly  
  CTQ28079.1  75 VTTPICYLEDLFVDPAFRGQGIARTMIKSLQSEGADKGWSRLYWHTRRDNPARHLYDE 132
                 577889999***********************************************86 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   6.7e-08   0.00015       4     127 ..       5     126 ..       3     128 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6.7e-08
  Acetyltransf_3   4 LrplteeDlealfelrsdpe.vmrylpepltleeaeewlerawaeeseeegyg.waivlkdtgviGsvglrdleeedee.....aelg.ymlaps 90 
                     +r+++++D +++++l+   +  +r+++ p+++e +e   +r++  +s  + +g  a+ + d  v+G++ +   e+   +     + l+ + ++p+
      CTQ28079.1   5 IREVRPHDKAEWLQLW---QgYTRFYGSPQPEEVTECTWQRMLDVNS--SVLGrVAV-VDDA-VVGFAICVLHEGT--WvttpiCYLEdLFVDPA 90 
                     7999999977766655...4478997777777777666665654433..33443555.3555.7999977755543..44578988883556688 PP

  Acetyltransf_3  91 fwgkGyateavralleyafeelglerlvavidkeNea 127
                     f+g+G+a+ + ++l     ++ g++rl++++  +N+a
      CTQ28079.1  91 FRGQGIARTMIKSLQSEG-ADKGWSRLYWHTRRDNPA 126
                     ******************.6777************97 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-06    0.0029      24      58 ..      79     113 ..      54     115 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-06
  Acetyltransf_CG  24 vldfthTeVpeelrGkGiAkkLvkaalddareegl 58 
                      +  ++  +V++++rG+GiA+ ++k+   +  ++g+
       CTQ28079.1  79 ICYLEDLFVDPAFRGQGIARTMIKSLQSEGADKGW 113
                      56677889***************998777666666 PP

>> NAT  NAT, N-acetyltransferase, of N-acetylglutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   6.6e-06     0.015      66     134 ..      56     130 ..      34     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.6e-06
                 EEETTXSEEEEE......EXSSSSXEEEEEEEXHHHHHTTHHHHHHHHHH.....HHXSSEEEEEETTXTTHHHH CS
         NAT  66 yiaedyeglAivt.wedpkeekevayLdkFavlkssqgsgvsdvvfkalk.....kdfpkLvWrsrednpvnkWy 134
                  +++ + g Ai++  e++  ++ + yL+ + v ++ +g+g++  + k+l+     k +++L+W  r+dnp  + y
  CTQ28079.1  56 VVDDAVVGFAICVlHEGTWVTTPICYLEDLFVDPAFRGQGIARTMIKSLQsegadKGWSRLYWHTRRDNPARHLY 130
                 578888999997525777778889*************************62333345888**********99888 PP

>> Nop10p  Nucleolar RNA-binding protein, Nop10p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   3.6e-05     0.081      35      48 ..     133     146 ..     106     148 .] 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.6e-05
                 --TT-TTCHHHHHC CS
      Nop10p  35 FSPdDkyskyRral 48 
                 F P+D y +yR++l
  CTQ28079.1 133 FTPADDYVRYRITL 146
                 9***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1239.31
//
Query:       CTQ28080.1  [L=30]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-05   25.3   0.1    1.3e-05   25.2   0.1    1.0  1  Tautomerase_2  Tautomerase enzyme


Domain annotation for each model (and alignments):
>> Tautomerase_2  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1     7e-10   1.3e-05      62      82 .]       3      23 ..       1      23 [. 0.94

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 7e-10
                   --GGGEEEEEEEE-GGGEEET CS
  Tautomerase_2 62 irpeDvfivlvenpkedWSfg 82
                   ++p+Dv++v++ n+ edWSf+
     CTQ28080.1  3 VSPQDVMVVIQFNQLEDWSFS 23
                   89******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 245.87
//
Query:       CTQ28081.1  [L=238]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1763.76
//
Query:       CTQ28082.1  [L=64]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.37    9.5   8.6       0.42    9.3   8.6    1.0  1  DUF2207         Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   8.6   2.3e-05      0.42     374     430 ..       5      60 ..       2      63 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 2.3e-05
     DUF2207 374 kkgkkklkklsalglgliilglilillallllvlllvfllilllillliaiivlllf 430
                 k+  k+ ++l ++g+g+++l++i+++ ++++l++ + + li l++ll+i++ v+++f
  CTQ28082.1   5 KRWLKEEFILFLWGWGIVLLIIIFSM-VAVSLFPDIAINLIGLFVLLIIGFHVVVWF 60 
                 55556666677777777666666655.555555658888888888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1196  (0.0667076); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 504.48
//
Query:       CTQ28083.1  [L=160]
Description: putative Hcp1 family type VI secretion system effector [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-28   97.7   0.0    7.3e-28   97.6   0.0    1.0  1  T6SS_HCP  Type VI secretion system effector, Hcp


Domain annotation for each model (and alignments):
>> T6SS_HCP  Type VI secretion system effector, Hcp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   4.1e-32   7.3e-28       1     129 []       6     142 ..       6     142 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 4.1e-32
                 EEEECC.....ES-----SSSTTSEEEEEEEEEEEE-SS--TTSBCCC....EEEEEEEEEEESSTTHHHHHHHHHHT--EEEEEEEEE-TT.-TTS-- CS
    T6SS_HCP   1 ylkieg.....ikGestdkghedeievlsfshgvsqprsasagsgsgaragkvehseltitkeiDkaspkLlkalakgehlkevelsvyras.ggkeee 93 
                 yl++++     i G++  +++ ++ie+++++h v  p+++++g+ +g+r     h++++i+ke+D+++p+L++al++g +l +++l++yr++ +g e+e
  CTQ28083.1   6 YLWLTDennspIIGSCLMPTRTGSIELQAVNHHVWLPTDNNTGKLTGTR----LHTPVKIQKEFDRTTPLLFRALCEGRTLRSATLKMYRINeAGLEVE 100
                 8999998999999***********************************9....9********************************************* PP

                 -ECEEECCEEEEEEEEE....TS..S-EEEEEEEECCEEEEE CS
    T6SS_HCP  94 yltitLenvlissisvs....ae..lpleevslsYakieweY 129
                 y++i + n++i+ i+++    ++  ++le+++++Y++i+w Y
  CTQ28083.1 101 YFNIAMANIKITAITPNlhpaGMtsTHLEDIDFRYETITWIY 142
                 *****************876423559**************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.46
# Mc/sec: 1035.18
//
Query:       CTQ28084.1  [L=126]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-26   92.3   0.1      2e-26   91.9   0.1    1.2  1  Tautomerase_2  Tautomerase enzyme
       0.01   15.8   0.0       0.18   11.7   0.0    2.2  2  Tautomerase    Tautomerase enzyme


Domain annotation for each model (and alignments):
>> Tautomerase_2  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.1   2.2e-30     2e-26       1      82 []      38     119 ..      38     119 .. 0.99

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 2.2e-30
                    --EEEEEEE-GGGEE--T.....TS-TT-EEEEEEEES---HHHHHHHHHHHHHHHHHHH---GGGEEEEEEEE-GGGEEET CS
  Tautomerase_2   1 drfqiitehepeelviddtylgieRsddlvvieitlsegRseeqKkaLyralaerlaaklgirpeDvfivlvenpkedWSfg 82 
                    drfq i++ ++e++++d++yl+ +Rs ++v+++i+++++Rs++qK+ Lyr+l+ rl +++ ++p+Dv++v++ n+ edWSf+
     CTQ28084.1  38 DRFQFIERAADEQRIYDPHYLSEGRSARFVLFHIFAGKPRSRAQKQGLYRRLCARLDDEMAVSPQDVMVVIQFNQLEDWSFS 119
                    9********************************************************************************6 PP

>> Tautomerase  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.025   2.2e+02      19      48 ..      20      49 ..      17      61 .. 0.80
   2 !   11.7   0.0     2e-05      0.18       3      50 ..      67     116 ..      66     124 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHTS-GGG-EEEEEEE-TT CS
  Tautomerase 19 LaervTealvealgaprsaivVvieEvpae 48
                 L +  +e lv  +++p ++ +++ie  ++e
   CTQ28084.1 20 LSALFHECLVAEFDVPSADRFQFIERAADE 49
                 5566689999999**********9977766 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2e-05
                  EEEEESTCS..-HHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEEE-TTSE CS
  Tautomerase   3 vnIklvegr..saeqKaeLaervTealvealgaprsaivVvieEvpaenw 50 
                  v + ++ g   s++qK+ L +r+ + l + + +++++++Vvi+  + e+w
   CTQ28084.1  67 VLFHIFAGKprSRAQKQGLYRRLCARLDDEMAVSPQDVMVVIQFNQLEDW 116
                  55667755556*******************************86666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 949.75
//
Query:       CTQ28085.1  [L=106]
Description: putative carboxymuconolactone decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-20   72.0   0.1    3.8e-20   71.7   0.1    1.1  1  CMD       Carboxymuconolactone decarboxylase family
  ------ inclusion threshold ------
      0.085   13.3   0.0       0.11   12.9   0.0    1.2  1  DUF5476   Family of unknown function (DUF5476)


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.1   4.2e-24   3.8e-20       1      84 [.      16      99 ..      16     100 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 4.2e-24
                HHHHHHHHHHHHHHCC.GSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHH CS
         CMD  1 pellraltalrealla.reggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaae 84
                p+l+++++ + +++++ r ++L+p+er+Li+l +++a+g  + +  H++   ++G+++eei e++++ a+yagwpaa +Al  ++
  CTQ28085.1 16 PKLAELTETVLFGDIWaR-SELSPRERSLITLSALTAQGKTEQLPWHIALGYQNGLSREEIVELFTHLAFYAGWPAAASALTCLN 99
                88999***********77.66*********************89************************************98775 PP

>> DUF5476  Family of unknown function (DUF5476)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.2e-05      0.11       7      36 ..       1      29 [.       1      42 [. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.2e-05
     DUF5476  7 vkvPKvdtaqvkapePaPLteepkgvefGg 36
                +++P vd  ++ a++P  L+e    v fG+
  CTQ28085.1  1 MSTPPVDRRTLAAIAPK-LAELTETVLFGD 29
                689**************.***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 804.16
//
Query:       CTQ28086.1  [L=253]
Description: trans-aconitate methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-13   49.9   0.0    4.2e-13   49.5   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    8.4e-12   45.6   0.0    1.3e-11   45.0   0.0    1.3  1  Methyltransf_25  Methyltransferase domain
    5.4e-10   39.3   0.0    7.1e-10   38.9   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    1.4e-09   38.5   0.0    2.4e-09   37.7   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    8.5e-09   36.1   0.0    1.3e-08   35.5   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
      0.006   16.7   0.0     0.0082   16.3   0.0    1.2  1  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.017   14.6   0.0      0.026   14.1   0.0    1.3  1  MTS              Methyltransferase small domain
      0.018   14.5   0.0        6.5    6.2   0.0    2.2  2  Methyltransf_4   Putative methyltransferase
      0.052   12.5   0.0      0.067   12.2   0.0    1.1  1  DUF3843          Protein of unknown function (DUF3843)
       0.13   12.7   0.0       0.35   11.3   0.0    1.7  1  DUF4350          Domain of unknown function (DUF4350)


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   2.3e-16   4.2e-13       1     162 [.      12     176 ..      12     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 2.3e-16
  Methyltransf_23   1 ydaqreeelsdklerllpklraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeq...eaaepqgkfdlIvlr 89 
                      +da+r + ++d+l r++    +    +d+GcG G+ +++lr+ +   +++g+D sp++      a +a +d+++ +    ++ p++ +d+I+++
       CTQ28086.1  12 FDAERTRPAADLLSRIA--HLQVEHAVDLGCGPGNSTRLLRAAWPlaTIVGIDNSPAMLVQ---AAQALPDCEFIDadiARWRPAQPPDVIYAN 100
                      67899999999999999..7899999**************7665558*********97775...4677777775554446777*********** PP

  Methyltransf_23  90 evlehvpdppellrqiatllkpgGylllseplasl.kedrllldw..lylvpagrhisffsarslkelleeaGlev 162
                       +l ++ d++ l+ ++ + l+++G l +++p++ + ++  l++++  ++  p+ +   +    ++ +ll ++G+ev
       CTQ28086.1 101 ASLQWLTDHETLFPHLVNQLADNGTLAVQMPDNWQePSHTLMRQVasEMGLPDRGRQPLLPPAAWYDLLSRQGCEV 176
                      *******************************875442555555542245566645668888888888888888887 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   7.2e-15   1.3e-11       2      97 .]      36     124 ..      35     124 .. 0.89

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 7.2e-15
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkp 95 
                      +dlGcG+G+ t+ l ++++ a+++g+D s++ml +a++ +    +++ef+ +d+ ++  +++  D+++++ +l++l+  d+e+++ ++ + L +
       CTQ28086.1  36 VDLGCGPGNSTRLLRAAWPLATIVGIDNSPAMLVQAAQAL----PDCEFIDADIARWR-PAQPPDVIYANASLQWLT--DHETLFPHLVNQLAD 122
                      7****************999********************....9************9.5679******766**998..566888888877777 PP

                      EE CS
  Methyltransf_25  96 gG 97 
                      +G
       CTQ28086.1 123 NG 124
                      66 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0     4e-13   7.1e-10       7     119 ..      35     138 ..      31     178 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 4e-13
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkileeier 99 
                       +DlGCG G+ t  l   + p a++vGiD+s+ ++ +A +      l  +eF  +di    + +   ++ D+i +n+ l+ l+d +  +  + +
       CTQ28086.1  35 AVDLGCGPGNSTRLLR-AAWPLATIVGIDNSPAMLVQAAQA-----LPDCEFIDADIARwRP-A---QPPDVIYANASLQWLTDHETLFPHLVN 118
                      68**************.999*******************95.....779**********666.3...79************************* PP

  Methyltransf_31 100 vlkpggilliedprllaelp 119
                       l ++g l+++ p+ ++e  
       CTQ28086.1 119 QLADNGTLAVQMPDNWQEPS 138
                      **************776655 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   1.3e-12   2.4e-09       1      96 []      36     128 ..      36     128 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.3e-12
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      +d+GcG G  ++ l  +   a++vg+D s++ml +a ++ ++    +ef+ ad+ +   + +  D+++++ +l+++ d+e ++  ++  L  +G
       CTQ28086.1  36 VDLGCGPGNSTRLLRAAWplATIVGIDNSPAMLVQAAQALPD----CEFIDADIARW-RPAQPPDVIYANASLQWLTDHETLFPHLVNQLADNG 124
                      59*************77799*************888777777....668******96.345569****************************** PP

                      EEEE CS
  Methyltransf_11  93 llvi 96 
                      +l++
       CTQ28086.1 125 TLAV 128
                      9975 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   7.2e-12   1.3e-08       1      99 []      36     126 ..      36     126 .. 0.97

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 7.2e-12
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnirklLk 94 
                      +++GcG G+ +r l+++ p ++++g+D sp+++++a++ l + e  +++  +++  +          D+++a+  l++l d + ++ ++ + L+
       CTQ28086.1  36 VDLGCGPGNSTRLLRAAWPLATIVGIDNSPAMLVQAAQALPDCEFIDADIARWRPAQ--------PPDVIYANASLQWLTDHETLFPHLVNQLA 121
                      59*******************************************999999999999........78*************************** PP

  Methyltransf_12  95 pgGrl 99 
                      ++G l
       CTQ28086.1 122 DNGTL 126
                      ***86 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   4.6e-06    0.0082      20      73 ..      29      88 ..      15     131 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.6e-06
                -.TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS......HHHTTEEEECS-CCCS CS
        FtsJ 20 k.pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm......aplpgvttiqgditdp 73
                + +++++vDlg++PG+ +  l       + +v++D  p       + lp +++i +di + 
  CTQ28086.1 29 HlQVEHAVDLGCGPGNSTRLLRAAWPL-ATIVGIDNSPAmlvqaaQALPDCEFIDADIARW 88
                4467889**************999876.99******988799876666*********9654 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.4e-05     0.026      23     101 ..      23      97 ..      12     150 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
                 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEE CS
         MTS  23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdli 101
                 Ll+ + + + ++++DlGcG G  +  l +++p a+++ +d++ + l  a + l     ++e++  d+    + +  d+i
  CTQ28086.1  23 LLSRIAHLQVEHAVDLGCGPGNSTRLLRAAWPLATIVGIDNSPAMLVQAAQALP----DCEFIDADIARWRPAQPPDVI 97 
                 5566666666789***************************99877766555443....345555555555555555555 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0036       6.5       5      44 ..      35      74 ..      31      87 .. 0.88
   2 ?    6.2   0.0    0.0037       6.5     107     158 ..      97     148 ..      91     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0036
                    EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHH CS
  Methyltransf_4  5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkk 44
                     +++GcG G+++  l  + P  +++Gi+ +  ++ ++ ++
      CTQ28086.1 35 AVDLGCGPGNSTRLLRAAWPLATIVGIDNSPAMLVQAAQA 74
                    69**************************999988887765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0037
                     EEEEEEEEEEESHHHHHHHHHHHHHCSTTEEESSCCCSCCTCHCHHCCCSST CS
  Methyltransf_4 107 LkkgGvlelaTDveeyaeemlkvleeeplferlskeeeleeeplsvlriatk 158
                     +  +++l+  TD+e ++ + +++l+ + ++     ++++e++ + + ++a++
      CTQ28086.1  97 IYANASLQWLTDHETLFPHLVNQLADNGTLAVQMPDNWQEPSHTLMRQVASE 148
                     5678899999**************************9999988766666655 PP

>> DUF3843  Protein of unknown function (DUF3843)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.7e-05     0.067     169     252 ..      99     182 ..      73     200 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.7e-05
     DUF3843 169 arelleWlhyesYlteenqeelqeelekveekeesteekkeeliekvaeeltfelrtellaltssewlallgkenpehqlwkev 252
                 a+  l+Wl  +  l+    ++l+++   + +++++++e  ++l+ +va+e+ +  r     l ++ w +ll+++ +e ++w+ +
  CTQ28086.1  99 ANASLQWLTDHETLFPHLVNQLADNGTLAVQMPDNWQEPSHTLMRQVASEMGLPDRGRQPLLPPAAWYDLLSRQGCEVDIWRTT 182
                 7889**********************9999***********************9998888899******************986 PP

>> DUF4350  Domain of unknown function (DUF4350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002      0.35       8      32 ..     163     188 ..     161     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
     DUF4350   8 ralaelLeaqGvevrrvrkpfd.ale 32 
                 +a+++lL++qG ev+ +r++++  l+
  CTQ28086.1 163 AAWYDLLSRQGCEVDIWRTTYFhPLA 188
                 69******************994444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1867.18
//
Query:       CTQ28087.1  [L=96]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.05   13.8   0.3      0.084   13.1   0.3    1.4  1  DUF3265   Protein of unknown function (DUF3265)


Domain annotation for each model (and alignments):
>> DUF3265  Protein of unknown function (DUF3265)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   4.7e-06     0.084       2      10 ..       7      15 ..       6      16 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.7e-06
     DUF3265  2 aAWhFlyAV 10
                +++hF+y+V
  CTQ28087.1  7 QRVHFYYCV 15
                7*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 753.34
//
Query:       CTQ28088.1  [L=74]
Description: hypothetical protein CH1034_220064 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 579.75
//
Query:       CTQ28089.1  [L=395]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-27   94.3  61.1    1.5e-13   50.4  32.3    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4  32.3   8.6e-18   1.5e-13       3     233 ..      19     239 ..      17     250 .. 0.77
   2 !   43.9  30.5     8e-16   1.4e-11       6     174 ..     223     385 ..     219     394 .. 0.84

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 8.6e-18
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.....ss...lwlllvlrv 93 
                 + +++ +l++++ +++lp ++  +lg+s  ++g++++l ++ ++++ + +Gr +d +G+++v+ lg+++ +l++++ l+a     ++   + +ll++rv
  CTQ28089.1  19 VFTCICYLSIGLPLAVLPGYIHYQLGYSTFVAGIVISLQYISTLISRPHAGRYTDIWGPKKVVSLGIVCCLLSGAFTLLAvvlqaTPmlaIAALLAGRV 117
                 5689999*****9999999*****************************************************955555333454422332445****** PP

       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtg 192
                 + G+g+++ ++++  +  + +   + +r+i++ ++++ +++++g++lg  l +++g ++   ++ +v++++     ll+ +++ + k  ++++      
  CTQ28089.1 118 FLGVGESFTATGATLWGIKTVGAIHTSRVISWNGVATYVAMAVGAPLGVTLNHYFGISGFATVVVLVAAIG-----LLFARTRQDVKVTAGARA----- 206
                 ****************************************************9999887777777777777.....444444444444445444..... PP

       MFS_1 193 paplvpawkallkdpvlw..illialllfffgfsglltllply 233
                      p + a++++   w   l +a+ ++  gf  + t+++ly
  CTQ28089.1 207 -----P-FHAVVRKI--WpyGLGLAFGTV--GFGVIATFITLY 239
                 .....2.44444444..632133333333..555566666666 PP

  == domain 2  score: 43.9 bits;  conditional E-value: 8e-16
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfp 104
                 ++ + ++++++++++l+ a +  ++   + + l+l+++g++   l+lG  ++rfG  +v l+++++ +lglll+++a+s w+  v+ +l+G g +++fp
  CTQ28089.1 223 AFGTVGFGVIATFITLYFAAH-SWQ--GAAFTLSLFSVGFICVRLVLGNTITRFGGVPVSLACFIIESLGLLLIWLAPSAWMAGVGAFLTGSGFSLVFP 318
                 444455555555555422222.233..34556688***********************************77777789999****************** PP

       MFS_1 105 agaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpe 174
                 a ++ +++ + ++++g a+g +sa+  l+  l+ +l+g++a  +    +++++aiv +laf+l    +++
  CTQ28089.1 319 ALGVEAVKQVEEQNQGTALGTYSAFLDLALGLTGPLAGWVAGFYDLATLYLLAAIVVALAFLL---IFRV 385
                 ************************************************************995...4433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       882  (0.049194); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2839.17
//
Query:       CTQ28090.1  [L=140]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       239  (0.0133304); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1080.47
//
Query:       CTQ28091.1  [L=389]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-80  271.7  45.1    1.3e-80  271.4  45.1    1.0  1  MFS_4         Uncharacterised MFS-type transporter YbfB
    8.9e-14   51.2  60.8    3.4e-12   46.0  44.1    2.2  2  MFS_1         Major Facilitator Superfamily
    0.00041   19.2   0.2    0.00041   19.2   0.2    2.2  3  GPDPase_memb  Membrane domain of glycerophosphoryl diester ph


Domain annotation for each model (and alignments):
>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.4  45.1   2.2e-84   1.3e-80       1     362 [.      23     383 ..      23     384 .. 0.92

  Alignments for each domain:
  == domain 1  score: 271.4 bits;  conditional E-value: 2.2e-84
       MFS_4   1 lavalGiGRFsytpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvl 99 
                 l++++G GRF++t +LP +l+eg l+l +  l a+aNy+GYLvGall a  +   a+Rl   +++ +t ++l+  a+++s ++++ +R +aG  sA++l
  CTQ28091.1  23 LMIGMGYGRFAFTGVLPLMLNEGLLTLHEGNLAASANYAGYLVGALLLARVQPGAATRLS-IISAGLTIASLALLAWVSSPWIIITLRAVAGALSAITL 120
                 689********************************************9999999999995.566777888888889*********************** PP

       MFS_4 100 vfgsslvlahaaaarrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllv..alllpraalreasaa..aeaakaeqkslpll 194
                 ++gs + l+h    ++++   ll+aGvGlGi +s++ ++l+++l   ++ +Wl+ a+ + +ll+l   +ll+p aal  as+   + +a    + ++++
  CTQ28091.1 121 IAGSLWLLEH---MGHHHGAPLLYAGVGLGIFISAEGIALGHALSFTSQQIWLLCALCAGLLLVLAirWLLTPPAALVRASHVetSLPASGSDTRRAAW 216
                 **********...99999999**************************************9988765123444544444555431133457888999*** PP

       MFS_4 195 alllaYglaGfGYiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllsllspsplglivssvllGltf 293
                 +ll++YglaGfGYiitat+l+++    +  ++   +lW l+Glaa++++l+w+++  ++g r+al+ +ll++a+gv+l+  s s+l  ++s++l+G tf
  CTQ28091.1 217 RLLMVYGLAGFGYIITATYLPLFLSG-SLQSVDPVHLWALFGLAAAPSCLIWHKLVLKWGYRQALTRNLLVQALGVILPACSASLLFCVLSALLVGFTF 314
                 ***********************988.66678899**************************************************************** PP

       MFS_4 294 laitalvlqlarelappatrrllglmTasfgigQilGpllasllaeatgslalallvaaaalvlaaliv 362
                 ++++ ++l+ a+ l+ +   +++++mTa +g+gQi+Gpl+a++l++ + s+++al +aa al++aa +v
  CTQ28091.1 315 MGTVTIALPKAKSLSHQVSFNMIAAMTALYGVGQIAGPLIAGALYQIAASFNPALYAAALALLIAAGLV 383
                 *****************************************************************9875 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0  44.1   5.7e-16   3.4e-12       5     321 ..      24     322 ..      20     334 .. 0.80
   2 !   11.2   8.7   2.1e-05      0.13     122     172 ..     336     384 ..     334     389 .] 0.88

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 5.7e-16
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslwlllvlrvlqGlgagal 102
                  + ++++r++++ +lpl+l+e l ++ +e +l++++ ++g++v++l+l+r+    G+   + ++++ l++++l+ll+++ss w+++ lr+++G+ +++ 
  CTQ28091.1  24 MIGMGYGRFAFTGVLPLMLNEGL-LTLHEGNLAASANYAGYLVGALLLARVQP--GAATrLSIISAGLTIASLALLAWVSSPWIIITLRAVAGALSAIT 119
                 5667889999******6555555.5**************************44..4333355555555555533444568888**************** PP

       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpaw 200
                 + ag  ++ +   + ++g  + ++++g ++ + + g +lg +l+  +  + +++++a+ + l++vl++ +l+++p +  r s++e        p++   
  CTQ28091.1 120 LIAGSLWLLEHMGH-HHGAPLLYAGVGLGIFIsAEGIALGHALS--FTSQQIWLLCALCAGLLLVLAIRWLLTPPAALVRASHVET-----SLPASG-- 208
                 *************9.99999966666666665455666666666..8889999999999999999*99****************99.....333333.. PP

       MFS_1 201 kallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtss 299
                 +  ++    w ll++  l++fg+ ++ t+lpl+l   l        + l al++l++a+++l++ +l+ ++g r +l+ +ll+ +l++++ a  a    
  CTQ28091.1 209 SDTRRAA--WRLLMVYGLAGFGYIITATYLPLFLSGSLQSV---DPVHLWALFGLAAAPSCLIWHKLVLKWGYRQALTRNLLVQALGVILPACSASL-- 300
                 5555555..988888888888***********977766665...4444579999999999************************9999988888888.. PP

       MFS_1 300 avllllvlvliGf.glgfvfpsl 321
                  ++++l+ +l+Gf ++g+v+++l
  CTQ28091.1 301 -LFCVLSALLVGFtFMGTVTIAL 322
                 .7777788889998888887776 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 2.1e-05
       MFS_1 122 aigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllll 172
                 +i+ ++a +++G i gpl++g+l+  ++++  + y++a+++l+a+    l++
  CTQ28091.1 336 MIAAMTALYGVGQIAGPLIAGALYqIAASFNPALYAAALALLIAAG---LVF 384
                 799*********************88888**************965...333 PP

>> GPDPase_memb  Membrane domain of glycerophosphoryl diester phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1      0.48   2.9e+03     248     276 ..      78     106 ..      56     112 .. 0.58
   2 !   19.2   0.2   6.8e-08   0.00041     159     238 ..     163     239 ..     159     261 .. 0.76
   3 ?   -1.6   0.3      0.15   9.1e+02      69      87 ..     299     317 ..     253     351 .. 0.52

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.48
  GPDPase_memb 248 pkkvslilaiinltllqiisliilvlsiv 276
                    +++s+i+a ++ + l ++  + +++ i+
    CTQ28091.1  78 ATRLSIISAGLTIASLALLAWVSSPWIII 106
                   45566677776666666666666666655 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 6.8e-08
  GPDPase_memb 159 kttilivllylifylivfylaiRliftLPliilekkslkeAlkeSwqltkknflrlllklllliliivivltvilsllll 238
                   +t+ +i+ll ++   ++++laiR+++t P    + ++++++l  S + t++  +rll+ + l  + ++i  t++     +
    CTQ28091.1 163 FTSQQIWLLCALCAGLLLVLAIRWLLTPPAALVRASHVETSLPASGSDTRRAAWRLLMVYGLAGFGYIITATYLPL---F 239
                   566777888999999*****************************************54444333333333333333...3 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.15
  GPDPase_memb  69 LillllllllliylefalL 87 
                    +l+ +l++ll+ + f+  
    CTQ28091.1 299 SLLFCVLSALLVGFTFMGT 317
                   2222223333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 3061.11
//
Query:       CTQ28092.1  [L=281]
Description: LysR substrate binding domain protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-26   92.4   3.2    3.6e-26   91.8   3.2    1.3  1  LysR_substrate  LysR substrate binding domain
      3e-18   65.5   3.0    4.8e-18   64.9   0.6    2.5  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.011   15.7   0.5      0.045   13.8   0.0    2.2  2  HTH_20          Helix-turn-helix domain
      0.062   12.9   0.1        0.2   11.2   0.1    1.9  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.093   12.7   0.2       0.26   11.2   0.1    1.7  2  MarR            MarR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   3.2     1e-29   3.6e-26       3     205 ..      86     276 ..      84     279 .. 0.91

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 1e-29
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.......CCTTEEEEEEEEEEEEEEEETTSGG CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.......edsglearpLaeeplvlvaspdhpL 90 
                      ++g+Lr+ga +++a+++lppll rf+++ P+v++ l + ++ +l ++++   lD+a++ +pp        +++l ++p++ e l+lv ++  p 
      CTQ28092.1  86 TPGGSLRLGAMEATAASRLPPLLTRFQQQCPQVDITLITQPTRQLTEGVLTAALDAALVCLPPgadgqpaCPAELAFTPVFYETLMLVRPQT-P- 178
                     589****************************************************************9999*****************7777.4. PP

                     GGSSSECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEE CS
  LysR_substrate  91 argepvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelyl 185
                         p+        ++  +  g+++r l e++l+e++ +++v +evns++++la+va+G   +llp+s+++       l    l+ep  ++++ l
      CTQ28092.1 179 ---GPL--------RFAAFASGCSYRALGERWLAEQQAAVEV-HEVNSYHSMLACVASGRYACLLPQSVLSL----MTLPENCLSEPLCEATTQL 257
                     ...789........************************9999.**************************843....44666668885666***** PP

                     EEETTCCCHHHHHHHHHHHH CS
  LysR_substrate 186 vyrkgrelspavrafidflr 205
                     ++r+g    pa+  ++ +l+
      CTQ28092.1 258 IWRSGL-SAPALSEWRKLLQ 276
                     *****8.8888888887776 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.6   1.3e-21   4.8e-18       4      59 ..       6      61 ..       3      62 .. 0.97
   2 ?   -0.5   0.1      0.34   1.2e+03      21      45 ..      80     104 ..      75     114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 1.3e-21
                HHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  4 lrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l++f++vae++s+t+AA++Lg +q+ ++ +i++LEeel v+Lf+R +++++L +aG
  CTQ28092.1  6 LEIFIQVAETQSVTQAAKRLGRAQSNITTRIQQLEEELAVELFVRGNKKMVLSPAG 61
                99*******************************************9999******9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.34
                 HHHTS-HHHHHHHHHHHHHHHTS-S CS
       HTH_1  21 eeLglsqpavsrqikrLEeelgvpL 45 
                 ++L+ + p  s ++ ++E+    +L
  CTQ28092.1  80 QALHPTTPGGSLRLGAMEATAASRL 104
                 6888899999999999999877764 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.2e-05     0.045      21      55 ..      12      46 ..       5      48 .. 0.89
   2 ?   -2.3   0.1       1.3   4.7e+03      19      31 ..     143     161 ..     126     161 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
                TCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
      HTH_20 21 raegltaselaerldlskntlsyHLrvLeeagLve 55
                 ae +++++ a+rl+ +++++  ++++Lee  +ve
  CTQ28092.1 12 VAETQSVTQAAKRLGRAQSNITTRIQQLEEELAVE 46
                48999************************977776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.3
                 H......STCTTB-HHHHH CS
      HTH_20  19 L......araegltasela 31 
                 L      a++++++++ela
  CTQ28092.1 143 LvclppgADGQPACPAELA 161
                 1444444556666666665 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   5.6e-05       0.2      18      44 ..      16      42 ..       6      42 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.6e-05
      HTH_24 18 isqreLAerlglSpstvnrrlkrLeee 44
                 s ++ A+rlg  +s++++r+++Leee
  CTQ28092.1 16 QSVTQAAKRLGRAQSNITTRIQQLEEE 42
                688899*******************96 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   7.3e-05      0.26      15      43 ..      13      41 ..       8      45 .. 0.90
   2 ?   -3.1   0.0       2.2     8e+03      22      37 ..     256     271 ..     253     275 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.3e-05
                STTEEHHHHHHHHTS-HHHHHHHHHHHHH CS
        MarR 15 qgplsvseLakklgvskstvtrvldrLek 43
                 + +sv++ ak+lg  +s++t+ + +Le+
  CTQ28092.1 13 AETQSVTQAAKRLGRAQSNITTRIQQLEE 41
                577899999*******************8 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.2
                 HHHHHHTS-HHHHHHH CS
        MarR  22 eLakklgvskstvtrv 37 
                 +L  ++g+s ++++++
  CTQ28092.1 256 QLIWRSGLSAPALSEW 271
                 6666889999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2302.28
//
Query:       CTQ28093.1  [L=352]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-76  257.0   0.1    3.4e-76  256.8   0.1    1.0  1  NMO           Nitronate monooxygenase
    9.9e-06   24.8   0.6     0.0016   17.6   0.0    2.4  3  IMPDH         IMP dehydrogenase / GMP reductase domain
     0.0003   20.0   0.9    0.00048   19.4   0.0    1.7  2  NanE          Putative N-acetylmannosamine-6-phosphate epimer
    0.00082   18.8   1.0     0.0022   17.4   0.2    2.0  2  ThiG          Thiazole biosynthesis protein ThiG
     0.0033   16.9   0.0     0.0054   16.2   0.0    1.3  1  His_biosynth  Histidine biosynthesis protein
  ------ inclusion threshold ------
      0.023   14.0   0.5      0.023   14.0   0.5    2.1  2  TMP-TENI      Thiamine monophosphate synthase
      0.075   12.2   0.2       0.12   11.6   0.2    1.3  1  DHO_dh        Dihydroorotate dehydrogenase
      0.088   11.9   0.1       0.17   10.9   0.0    1.5  2  Dus           Dihydrouridine synthase (Dus)
        0.1   11.6   5.2      0.046   12.7   1.5    2.0  2  FMN_dh        FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.8   0.1   1.7e-79   3.4e-76       3     330 ..       4     347 ..       2     348 .. 0.91

  Alignments for each domain:
  == domain 1  score: 256.8 bits;  conditional E-value: 1.7e-79
         NMO   3 lltellkikppvvqpgmggiskarLaaavsnaGgLGvlasgyltaDrlakeirkvkaltdkPfgvnlflpkkdaadra..ekykkeleeaalelnieeg 99 
                 +l  ll i +p++q++m g+s+++LaaavsnaG+LG+l+ g  t  + ++ i + ++ltd+Pf+vnlf  ++   d    + ++  l  + + +     
  CTQ28093.1   4 PLLSLLDIDYPLIQAPMAGVSTPALAAAVSNAGALGSLGLGASTVAQAEAMIVATRQLTDRPFNVNLFCHAPPRRDARreADWATTLRPHFARYGSTPP 102
                 6778999**************************************9*************************9999987667777777755555554444 PP

         NMO 100 vr..........fyrkvevvldekvevvsfgfglpteevvarlkeagvvliptissvkearkvearGaDalivqGpeaGGhqG....tpevgdkglfaL 184
                 +           +   +e++ld  + vvsf+fglp+ e ++rl + g+v + t++s +ea  +e++G D++++qG+eaGGh+G    + + ++ ++f+L
  CTQ28093.1 103 DSlseiyqtfigHAPMLELLLDLSPAVVSFHFGLPEGETIQRLRRQGIVTLATATSLQEALLIEQQGIDVVVAQGYEAGGHRGifapQAPDAQLSTFTL 201
                 44889888877777889******************************************************************77543344449***** PP

         NMO 185 vpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesdakdahkkklleaklddteltsavsGrpaRalatelleelee.akiatlalp 282
                 v+  +  + iPv+AaGGi+d+ g+a ++ lG +gvq+gt+fLl+ es a +  ++++ ++   +t+ltsa+sGrpaR la+ +    e  +  a  ++p
  CTQ28093.1 202 VQLLRRRLTIPVVAAGGIMDGAGIASVMQLGVQGVQLGTAFLLCPESAADAGYRAAIHNSLDGRTVLTSAISGRPARCLANAFCALGEGyPASAVPDYP 300
                 ***********************************************************************************99999866777779** PP

         NMO 283 eahelakkiraalveagnteegllwagqgidrldkiisvkeLiesLve 330
                  a    k+++aa+  +g +e g+ wagqg + l ++  ++ L+ +L +
  CTQ28093.1 301 LAYDIGKALAAAAKAQGVHEYGAHWAGQGVG-LIRECDAASLVRQLAA 347
                 ******************************5.5567788899999875 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   7.8e-07    0.0016      30     173 ..       8     239 ..       1     239 [. 0.79
   2 !   11.0   0.2   7.6e-05      0.15     192     248 ..     195     251 ..     190     260 .. 0.88
   3 ?   -3.7   0.4       2.3   4.5e+03     220     232 ..     303     315 ..     301     316 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7.8e-07
                 TEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTS.............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................. RF
       IMPDH  30 kiklniPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrs.............................................. 82 
                  +++  Pl+ a+m  v+   +A a++++G++g +    s+ +qae +    r+                                              
  CTQ28093.1   8 LLDIDYPLIQAPMAGVSTPALAAAVSNAGALGSLGLGASTVAQAEAMIVATRQltdrpfnvnlfchapprrdarreadwattlrphfarygstppdsls 106
                 578899****************************998888888876655555569******************************************** PP

                 ................................TTSXBXTTSXB-EEEEE-SSTTHHHHHHHHHHTT-SEEEEE..-STSSSH...........HHHHHH CS
                 ................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx...........xxxxxx RF
       IMPDH  83 ................................pnaakdekgrllvgaavgvkedalervkalveagvdvlvvd..sahghse...........kvleav 136
                                                  ++ +  +++ +v+ a  +   +l+++  + ++g+dv+v     a gh              + + v
  CTQ28093.1 107 eiyqtfighapmlellldlspavvsfhfglpeGETIQRLRRQGIVTLATAT---SLQEALLIEQQGIDVVVAQgyEAGGHRGifapqapdaqlSTFTLV 202
                 ***************************988652222333333333333333...366777888899999998733466665422222222222456678 PP

                 HHHHHHTTTSEEE.EEEE-SHHHHHHHHHTT-SEEEE- CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 137 keikkkveevevi.aGnvataegakaLieagadavkvG 173
                 + +++++ ++ v+ aG + + +g++++++ g+++v+ G
  CTQ28093.1 203 QLLRRRL-TIPVVaAGGIMDGAGIASVMQLGVQGVQLG 239
                 8888888.6888769*******************9987 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 7.6e-05
                 HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 192 qltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspge 248
                 ql+  + v    ++  +pv+a GGi     i+  + +G + v lG  +  + Es ++
  CTQ28093.1 195 QLSTFTLVQLLRRRLTIPVVAAGGIMDGAGIASVMQLGVQGVQLGTAFLLCPESAAD 251
                 6666677777788899*********************************99999876 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.3
                 HHHHHHHHTT-SE CS
                 xxxxxxxxxxxxx RF
       IMPDH 220 gdivkAlaaGada 232
                 +di kAlaa a+a
  CTQ28093.1 303 YDIGKALAAAAKA 315
                 799******9975 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       1.5     3e+03       2      15 ..      26      39 ..      23      56 .. 0.61
   2 !   19.4   0.0   2.4e-07   0.00048      83     176 ..     140     242 ..     135     251 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.5
                HHHHHHHHHHT-SE CS
        NanE  2 aamakaaeqaGavg 15
                +a+a a+++aGa g
  CTQ28093.1 26 PALAAAVSNAGALG 39
                45666666666654 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.4e-07
                 HHHHHHHHH--EEEEE-SSHHHHHHHHHTT-SEE...E-TTTTSSTTS-.SS--.....HHHHHHHHHT.T--EEEES---SHHHHHHHHTT--SEEEE CS
        NanE  83 elikkikekyqllmaDistleeglvakklGvdiv...GttlsGytkeeekaepD.....falvkalsea.glkviaeGrintPekakkaieiGvdavvv 172
                 e i+++++++ + +a   +l+e+l  +++G+d+v   G    G+ +   ++ pD     f+lv+ l     + v+a G i   +  ++++++Gv+ v +
  CTQ28093.1 140 ETIQRLRRQGIVTLATATSLQEALLIEQQGIDVVvaqGYEAGGHRGIFAPQAPDaqlstFTLVQLLRRRlTIPVVAAGGIMDGAGIASVMQLGVQGVQL 238
                 67999****************************9333444455566666688883333345666665432567************************** PP

                 -HHH CS
        NanE 173 Gsai 176
                 G+a 
  CTQ28093.1 239 GTAF 242
                 *995 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.32   6.5e+02     182     214 ..      21      55 ..      10     100 .. 0.70
   2 !   17.4   0.2   1.1e-06    0.0022     160     207 ..     195     242 ..     142     270 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.32
                 S---SHHHHHHHHHTT-SEEE..ESHHHHTSSSHH CS
        ThiG 182 AGigspsdaaqamelGadavl..lntavaeakdpv 214
                 AG+ +p  aa++ + Ga + l   +++va+a+  +
  CTQ28093.1  21 AGVSTPALAAAVSNAGALGSLglGASTVAQAEAMI 55 
                 67777777777777777665411345555555443 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.1e-06
                 --S-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEESHHH CS
        ThiG 160 GllnkealkiiieeakvPvivDAGigspsdaaqamelGadavllntav 207
                  l++ + ++++++++++Pv+   Gi     +a +m+lG+++v l ta 
  CTQ28093.1 195 QLSTFTLVQLLRRRLTIPVVAAGGIMDGAGIASVMQLGVQGVQLGTAF 242
                 456677899************************************996 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.7e-06    0.0054      63     108 ..     200     245 ..     190     276 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.7e-06
                   HHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH- CS
  His_biosynth  63 dlveeiaeevfipvqvGGGIrsledveelleagadkviigtaavkn 108
                   +lv+ ++++++ipv   GGI +   +++++++g++ v +gta + +
    CTQ28093.1 200 TLVQLLRRRLTIPVVAAGGIMDGAGIASVMQLGVQGVQLGTAFLLC 245
                   4455555555555555555555555555555555555555555555 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.5   1.2e-05     0.023      95     177 ..     147     238 ..     136     242 .. 0.66
   2 ?   -3.2   0.3       2.3   4.5e+03      68      78 ..     309     319 ..     308     319 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
    TMP-TENI  95 pdliiGlSvhslee.aeeaealgadYigv......Gp..ifpTdtKkdaeplgleglkelaealeiPvvaiGGi.tlenvaevleagadgvav 177
                  + i+ l + +  + a+ +e++g+d +++      G+  i   +  +da+    ++++ l+++l+iPvva GGi + + +a+v++ g++gv +
  CTQ28093.1 147 RQGIVTLATATSLQeALLIEQQGIDVVVAqgyeagGHrgI-FAPQAPDAQLSTFTLVQLLRRRLTIPVVAAGGImDGAGIASVMQLGVQGVQL 238
                 5555665554443337777777776665422222222212.2345577788889999999*************835688***********965 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.3
    TMP-TENI  68 lalavgadgvH 78 
                 la a++a+gvH
  CTQ28093.1 309 LAAAAKAQGVH 319
                 79999*****9 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   6.1e-05      0.12     233     276 ..     200     242 ..     142     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.1e-05
                 HHHH.HHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHH CS
      DHO_dh 233 vire.lykrlkkeipiIgvGGiesgeDalekieaGAslvqvytal 276
                 ++ + l++rl   ip+++ GGi+ g      ++ G   vq++ta+
  CTQ28093.1 200 TLVQlLRRRLT--IPVVAAGGIMDGAGIASVMQLGVQGVQLGTAF 242
                 44440445555..******************************98 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.3   2.6e+03       2      21 ..      17      36 ..      16      62 .. 0.73
   2 ?   10.9   0.0   8.7e-05      0.17     173     224 ..     200     250 ..     157     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.3
                E---TTTS-HHHHHHHHHTT CS
         Dus  2 laPmagvtdlpfRelvrefg 21
                 aPmagv++ ++   v + g
  CTQ28093.1 17 QAPMAGVSTPALAAAVSNAG 36
                69999999888776666655 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 8.7e-05
                 HHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHH CS
         Dus 173 eaIkevkqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfa 224
                   ++ ++++++ipv+a G+I d   +  +++  G++gv  g + l  P   a
  CTQ28093.1 200 TLVQLLRRRLTIPVVAAGGIMDGAGIASVMQL-GVQGVQLGTAFLLCPESAA 250
                 567889************************99.*****99999888887655 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.19   3.8e+02      57     106 ..      11      58 ..       9      80 .. 0.61
   2 ?   12.7   1.5   2.3e-05     0.046     253     320 ..     194     259 ..     141     264 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.19
                 ESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS-HHHHHH CS
      FMN_dh  57 lslPvliaPvglaklahpdgelalaraaakagipfvlstvastsleevaa 106
                 +++P++ aP++  ++ +  + +  a a  +  + ++ stva+++   va 
  CTQ28093.1  11 IDYPLIQAPMAGVSTPALAAAVSNAGALGS--LGLGASTVAQAEAMIVAT 58 
                 689999999976555443333333333333..355667776666555554 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.3e-05
                 T---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHH CS
      FMN_dh 253 gapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpflyglaagGeeGvervle 320
                    +t+   + +++++   i+v++ gGi+ G+ ++  + lG ++v lG +fl     +  +G + +++
  CTQ28093.1 194 AQLSTFTLVQLLRRRL--TIPVVAAGGIMDGAGIASVMQLGVQGVQLGTAFLLCPESAADAGYRAAIH 259
                 3333333333344444..49*******************************99888888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2787.25
//
Query:       CTQ28094.1  [L=223]
Description: DL-methionine transporter subunit; membrane component protein of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-20   73.2  13.9    2.2e-20   73.2  13.9    1.4  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2  13.9   1.2e-24   2.2e-20       9     182 ..      48     222 ..      36     223 .] 0.92

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 1.2e-24
  BPD_transp_1   9 a..lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvl 103
                   a  l++  kl+ ll  +i++++slP++vl+i l+ +  ++ + + + +++i+ ++++a+p++ +++++al++++ + +ea + +G + w++++k +l
    CTQ28094.1  48 AngLAPMPKLNALLGAVINIGRSLPFIVLLIALIPFTRLIVGTTLGSTAAIVPVTIGAFPFFARLTENALDEVDYGRIEAILSMGGNVWHVIFKSLL 144
                   15578999**************************8878888999999************************************************** PP

  BPD_transp_1 104 PnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                   P alp++++g+ l+++ l+g ++++  +g+ +Glg+l ++   ++  +e ++g+vl+lv++v  +  + d l+r l+ r
    CTQ28094.1 145 PEALPTLLAGITLTIVMLIGFSSMAGVIGG-GGLGDLAIRYGYQRFNNEVMFGTVLILVAMVQGVQMAGDRLVRRLAHR 222
                   *****************************5.57******************9999999999999999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1830.71
//
Query:       CTQ28095.1  [L=263]
Description: ABC transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-34  119.2   0.0    2.7e-34  118.6   0.0    1.2  1  ABC_tran     ABC transporter
    5.2e-07   29.8   0.3      0.022   14.6   0.1    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    7.1e-05   22.3   0.4    0.00093   18.7   0.4    2.0  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00026   21.4   1.2    0.00054   20.4   1.2    1.5  1  AAA_16       AAA ATPase domain
    0.00027   21.2   0.9     0.0044   17.3   0.9    2.2  1  AAA_22       AAA domain
      0.004   16.9   0.2      0.009   15.7   0.2    1.7  1  AAA_29       P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.021   14.7   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
      0.015   15.8   0.1      0.027   15.0   0.1    1.3  1  AAA_23       AAA domain
      0.016   14.0   0.8        2.2    7.0   0.2    2.2  2  ABC_ATPase   Predicted ATPase of the ABC class
      0.023   14.8   0.2      0.041   14.0   0.2    1.8  1  MMR_HSR1     50S ribosome-binding GTPase
      0.036   14.3   0.6       0.23   11.7   0.6    2.1  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
      0.044   13.2   0.1       0.64    9.4   0.1    2.1  2  TniB         Bacterial TniB protein
        0.1   12.3   0.6       0.58    9.8   0.6    2.0  1  AAA_30       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.0   1.9e-37   2.7e-34       1     137 []      19     167 ..      19     167 .. 0.91

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 1.9e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren.............esde 83 
                 l+++ l++ +g +++i+G++GaGKStL+++l  l++pt+G+il++g+d+++     l+ +r + g+++q+ +l    tv++n             ++++
  CTQ28095.1  19 LNDIALQIPKGAIYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDITQlnkAALRDYRLRTGMIFQHFNLLHARTVADNvavpleiagvpraAREA 117
                 789************************************************999999***********************************7666666 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++ ++l+ ++l+e+++      ps+LSgGqkqrv +aral+ +p++ll+DE+t+
  CTQ28095.1 118 RVRELLELVDLSEKAA----AFPSQLSGGQKQRVGIARALAARPEVLLCDEATS 167
                 6666666666666444....456*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.6e-05     0.022       2      24 ..      32      54 ..      31      91 .. 0.81
   2 !   13.7   0.0     3e-05     0.041     235     302 ..     137     202 ..     108     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.6e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllar 24
                 ++ G+ g+GKS+L+++l ll r
  CTQ28095.1 32 YGILGRSGAGKSTLIRCLNLLER 54
                6899***************9954 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3e-05
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSplll 302
                 ++lS G+k+  +++ al++++    +ll DE  + L+P+ ++++l ll ++++r +  ++l TH+ +++
  CTQ28095.1 137 SQLSGGQKQRVGIARALAARP---EVLLCDEATSALDPETTASVLALLaDINQRLNLTIVLITHQLEVV 202
                 578999999999999999999...9********************999799999**********98875 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.4   6.8e-07   0.00093     117     204 ..     113     204 ..      20     216 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.8e-07
                 EE-HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 117 evtkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislreemlek 204
                  ++++ v+elle +++s++      +LSgG+k+ v +a  +A    +p+   l De  +aLD + ++ v  ll   +++ n  ++ i+++ e+++ 
  CTQ28095.1 113 AAREARVRELLELVDLSEKaaafpsQLSGGQKQRVGIARALAA---RPEV-LLCDEATSALDPETTASVLALLAdiNQRLNLTIVLITHQLEVVKT 204
                 4455666666666666655566666*************99874...5665.578******************995555566778888888887765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   1.2   3.9e-07   0.00054      29     170 .]      34     193 ..      18     194 .. 0.49

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.9e-07
      AAA_16  29 lsGesGvGKsslvrellralekdggiflrgkcdqlesa.........ipy....salaqalareellrqllde..........aesaeleawrekleea 104
                 + G sG GKs+l+r+l   le+     ++g+   ++++         + y     ++ q + +      l+++          +               
  CTQ28095.1  34 ILGRSGAGKSTLIRCLN-LLERP----TSGRILVNGQDitqlnkaalRDYrlrtGMIFQHF-N-----LLHARtvadnvavplE--------------- 106
                 89*************99.89988....5555555533311111112211122212222222.1.....1111122223444442............... PP

      AAA_16 105 laavpelagaeasrllellkrllallsrder......................plvlvlDdlq.wadeaslql.laaLlrlleskpllvv 170
                    ++ +++a++++  ++l +l++l+++ +                       p vl++D++   +d+++ +  la+L++  ++ +l++v
  CTQ28095.1 107 ---IAGVPRAAREARVRELLELVDLSEKAAAfpsqlsggqkqrvgiaralaarPEVLLCDEATsALDPETTASvLALLADINQRLNLTIV 193
                 ...3333333333333333333333333222333333333344444444444499*****999555555555537777777666699876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.9   3.2e-06    0.0044      10     131 ..      34     198 ..      28     205 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.2e-06
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee....................................erpevv......fvtlpsst..sskdllrellral 64 
                 + G sG+GK+tl+r l      ++   +                                         v        ++++     ++   rell+ +
  CTQ28095.1  34 ILGRSGAGKSTLIRCLNLLE--RPTSGRilvngqditqlnkaalrdyrlrtgmifqhfnllharT----VadnvavPLEIAGVPraAREARVRELLELV 126
                 88************999986..3333336787888888888888888877777777777743331....223332223332222434444467777777 PP

      AAA_22  65 glelkaerlsseell.ealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvGtp 131
                 +l+ ka  +  ++l   + ++   ara    +e+l+ DEa   l+   ++ +l  L ++    r +++++L+ ++
  CTQ28095.1 127 DLSEKA-AAFPSQLSgGQKQRVGIARALaarPEVLLCDEATSaLDpetTASVLALLADINQ--RLNLTIVLITHQ 198
                 776666.33344444366666666666677788*********9986543666666666655..888999998665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   6.5e-06     0.009      22      45 ..      28      52 ..      19      75 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.5e-06
      AAA_29 22 kg.atlltGpsGsGKSTllDAiqal 45
                kg ++ + G+sG+GKSTl+  ++ l
  CTQ28095.1 28 KGaIYGILGRSGAGKSTLIRCLNLL 52
                5667889***********9666555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.5e-05     0.021      99     120 ..      28      50 ..      10      68 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
                  T.SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  99 d.ktsvlvGqSGvGKStLinall 120
                  +  +  ++G SG+GKStLi  l+
   CTQ28095.1  28 KgAIYGILGRSGAGKSTLIRCLN 50 
                  4378889************9886 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   1.9e-05     0.027      21      41 ..      31      51 ..      20      52 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
      AAA_23 21 ltlItGpNGaGKTTildAikl 41
                ++ I G  GaGK+T+++++ l
  CTQ28095.1 31 IYGILGRSGAGKSTLIRCLNL 51
                678***************976 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0016       2.2     240     265 ..      24      50 ..      22      52 .. 0.92
   2 ?    5.3   0.0    0.0052       7.1     322     352 ..     138     168 ..     128     170 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0016
                 EEE-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAle 265
                 + ipkG +  I G+   GKsTL++ l+
  CTQ28095.1  24 LQIPKGaIYGILGRSGAGKSTLIRCLN 50 
                 579***9****************9986 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0052
                 S--HHHHHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 322 dASGStsqAanimealeagakllLiDEDtsA 352
                 + SG   q + i++al a+ ++lL DE tsA
  CTQ28095.1 138 QLSGGQKQRVGIARALAARPEVLLCDEATSA 168
                 5699999***********************9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2     3e-05     0.041       3      19 ..      33      49 ..      31     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3e-05
                EEEESTTSSHHHHHHHH CS
    MMR_HSR1  3 aivGrpNvGKStLinal 19
                +i+Gr+ +GKStLi+ l
  CTQ28095.1 33 GILGRSGAGKSTLIRCL 49
                79************988 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   0.00017      0.23      63      89 ..     148     182 ..     129     183 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
     SbcCD_C  63 a........lrlvfLDEAFsklDeesiatllelle 89 
                          +++++ DEA s lD+e++a++l+ll+
  CTQ28095.1 148 GiaralaarPEVLLCDEATSALDPETTASVLALLA 182
                 133444444999*******************9986 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.12   1.7e+02      40      53 ..      34      47 ..      24      59 .. 0.84
   2 ?    9.4   0.1   0.00047      0.64      50     161 ..      84     196 ..      82     209 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.12
        TniB 40 lvGdsnnGKtmive 53
                ++G+s  GK+++++
  CTQ28095.1 34 ILGRSGAGKSTLIR 47
                89**********97 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00047
        TniB  50 mivekFarlhppekdedaekvpvlvvqappkpdekrlyaaiLealgaplkara.....rvskleqqvlrllrelkvrvLiiDEihnllagsarkqrefl 143
                 mi+++F  lh ++  +d+  vp+ ++ +p  + e+r  +++Le +    ka a     +  ++++  ++   + +++vL+ DE  ++l    ++   +l
  CTQ28095.1  84 MIFQHFNLLHARTV-ADNVAVPLEIAGVPRAAREARV-RELLELVDLSEKAAAfpsqlSGGQKQRVGIARALAARPEVLLCDEATSAL--DPETTASVL 178
                 67777777776665.5566667777777766666664.344444433333333112114455555555666667889***********..7888999** PP

        TniB 144 nalksLgnelkipivlvG 161
                 ++l  ++++l+++ivl+ 
  CTQ28095.1 179 ALLADINQRLNLTIVLIT 196
                 ***************974 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.6   0.00042      0.58      20     114 ..      31     186 ..      22     219 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00042
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglApt..gkaAkvLa...eelgi........eastiakllkrlk........................ 81 
                 +  + G+ G+GK+t+++ l+ + +   gr+++      +   ++L+     +g+        +a+t+a  +   +                        
  CTQ28095.1  31 IYGILGRSGAGKSTLIRCLNLLERPTSGRILVNGQDitQLNKAALRdyrLRTGMifqhfnllHARTVADNV---Avpleiagvpraarearvrellelv 126
                 56689************999888877555554333200222222332221222222222333444444444...1223455566666666666666677 PP

      AAA_30  82 .......................grarlepgtllivDEagmv....dtkqlaallkaaek 114
                                        +ra  ++ ++l+ DEa  +     t+++ all+ +++
  CTQ28095.1 127 dlsekaaafpsqlsggqkqrvgiARALAARPEVLLCDEATSAldpeTTASVLALLADINQ 186
                 777777777777888888888764344444488888888776644444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2047.40
//
Query:       CTQ28096.1  [L=268]
Description: DL-methionine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-76  255.7   0.6    3.2e-76  255.5   0.6    1.0  1  Lipoprotein_9  NLPA lipoprotein


Domain annotation for each model (and alignments):
>> Lipoprotein_9  NLPA lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.5   0.6   1.8e-80   3.2e-76       1     235 [.      27     264 ..      27     265 .. 0.96

  Alignments for each domain:
  == domain 1  score: 255.5 bits;  conditional E-value: 1.8e-80
                    EEEEEETTTHHHHHHHHHHHHHTTTEEEEEEEESSSSHHHHHHHTTSSSEEEEEEHHHHHHHHHHTT-.EEEEEEEEE---EEE-SS-SSGGG--T CS
  Lipoprotein_9   1 lkvGvlsgpeaevlekvkkllkkkgldleiveFtdyvqpNkaladgeiDanaFQhlpyLeqfnkekgkklvavgnthvepiglYSkkykslselke 96 
                    l+v++ ++p+ae+l+ +kk+  +  ldl++ve+t+ v+ N+ la+g++Dan+FQh+pyL++++k+ gk ++  +++h+ep+g+YS+k k+ s+l+e
     CTQ28096.1  27 LRVAADPVPHAEILNYIKKI--DPSLDLKVVELTSGVNANELLASGDVDANYFQHVPYLKDQEKALGKTFAVAATVHIEPLGIYSHKHKDFSSLPE 120
                    679999*********99998..558****************************************9999*************************** PP

                    T-EEEEESSHHHHHHHHHHHHHTTSSEE-....TT-CTT--GGGEEE-TT--EEEEE-GGGHHHHGGTSSEEEE-HHHHHHTT--HHHH-SEE-.S CS
  Lipoprotein_9  97 GatiavpndpsnegRaLllLekagLikLk....dgkgllatvkdIteNpknLkikeleaaqlpralddvdaavintnyalkagldpkkdalfee.d 187
                    +at+avpn+++n +RaL lL+++ LikL+    d++++lat kdI+eNpk+Lki e+e+ q+pr+lddvd+avin+nyal+agl p kdal  e +
     CTQ28096.1 121 NATVAVPNNTTNLSRALFLLQAQKLIKLDpkftDPATTLATPKDIVENPKHLKILEIESPQIPRSLDDVDLAVINGNYALEAGLVPAKDALGLEsA 216
                    ****************************8333355899********************************************************78 PP

                    STSSG-EEEEEETTCTTSHHHHHHHHHHTSHHHHHHHHHHTTTSSEE- CS
  Lipoprotein_9 188 kdspyvniivvrekdkddeavkklveayqseevkkaiekkykgavvpa 235
                    + +py+ni+v+  + ++d+++k+l++ ++s++v+++i k+y+g+v+p+
     CTQ28096.1 217 EHNPYANILVTTPALANDPRIKALAKDLTSPQVAEFIRKTYNGSVIPV 264
                    89********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2213.37
//
Query:       CTQ28097.1  [L=342]
Description: 2OG-Fe(II) oxygenase family oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.3e-38  129.8   0.0    1.6e-37  128.8   0.0    1.5  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    1.3e-19   70.5   0.0    3.5e-19   69.2   0.0    1.7  2  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.8   0.0   1.8e-41   1.6e-37       1     117 [.       6     128 ..       6     129 .. 0.97

  Alignments for each domain:
  == domain 1  score: 128.8 bits;  conditional E-value: 1.8e-41
      DIOX_N   1 iPvidlsplsddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKekl..akspsfrGysrlgeektdgkkldwkesfdlgt 97 
                 +P++dl++++d++d+aa++++lr+A+r++Gffy++nhgv+++l  e+++++++FFal e++K+++   +sp+frGy+r+++e t+g ++dw+e+fd+g 
  CTQ28097.1   6 LPILDLARYADPADKAAFLADLRHAARDIGFFYLINHGVDDALQYEVQRQSQRFFALDEAQKQQVamIHSPHFRGYNRAASELTRG-QPDWREQFDIGA 103
                 7********999*****************************************************98999***************9.************ PP

      DIOX_N  98 elp.....eddpagkplegpnqwPe 117
                 e p     +d+p++++l+gpn+wP+
  CTQ28097.1 104 ERPaltlsDDAPRWQRLQGPNLWPA 128
                 *99999977778************7 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.74   6.6e+03      23      44 ..      29      50 ..      12      70 .. 0.60
   2 !   69.2   0.0   3.9e-23   3.5e-19       2      99 ..     176     273 ..     174     275 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.74
                  EEEEESSSEEEEEEE-TT---E CS
  2OG-FeII_Oxy 23 gahtdaslltillqddvgglev 44
                  +a +d +++++++      l++
    CTQ28097.1 29 HAARDIGFFYLINHGVDDALQY 50
                  6677777777644444455555 PP

  == domain 2  score: 69.2 bits;  conditional E-value: 3.9e-23
                   --EEEEEEE-S---------EEEEEESSSEEEEEEE-TT---EE.EETEEEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGSEEEEEE CS
  2OG-FeII_Oxy   2 eellvlnyypphpdpevilglgahtdaslltillqddvgglevf.kdgkwlrvppvdnslivniGdallflsngryksvlHrVlpvnegerRvsiay 97 
                   e++ +++y p ++++ +++g+gah+d ++l++llqd+  gl+v+ + g+w++  p  +s++vniG  l++ +ng+++ + HrV     +++R+sia+
    CTQ28097.1 176 EHIKLIRY-PGQQETQSSQGVGAHKDSGFLSFLLQDEQKGLQVEvAPGEWIDAVPLAGSFVVNIGELLELATNGYLRATVHRVVSPPAQQQRLSIAF 271
                   44455666.99999999**************************657799***********************************6666666****** PP

                   EE CS
  2OG-FeII_Oxy  98 fi 99 
                   f+
    CTQ28097.1 272 FL 273
                   97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2695.04
//
Query:       CTQ28098.1  [L=87]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-34  115.5   0.0    1.3e-33  115.0   0.0    1.2  1  VF530     DNA-binding protein VF530


Domain annotation for each model (and alignments):
>> VF530  DNA-binding protein VF530
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.0     7e-38   1.3e-33       2      63 .]       5      66 ..       4      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 7e-38
                S-TTSS--HHHHHHHHHHHT-HHHHHHHTTSSSTTSS--HHHHHHHHHHSHHHHHHHHHHHH CS
       VF530  2 nnpLhGvklekileeLveeygweeLaerinircFksnpsikSslkFLrktpWArekvEelYl 63
                ++pLhGv+le++l++Lv++ygw+e+a+++ni+cFks+psikSslkFLr+tpWAr+ vE++Yl
  CTQ28098.1  5 KDPLHGVTLEALLNALVARYGWAEMARQVNINCFKSDPSIKSSLKFLRRTPWARKEVEAMYL 66
                89***********************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 652.12
//
Query:       CTQ28099.1  [L=103]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-05   23.5   0.0    4.6e-05   23.1   0.0    1.1  1  3-HAO          3-hydroxyanthranilic acid dioxygenase
    5.7e-05   22.8   0.4    7.3e-05   22.4   0.4    1.3  1  Cupin_2        Cupin domain
     0.0044   17.1   0.0     0.0053   16.8   0.0    1.3  1  cNMP_binding   Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
      0.055   13.7   0.1        0.1   12.8   0.1    1.5  2  Peptidase_M23  Peptidase family M23
       0.14   12.2   0.0       0.18   11.8   0.0    1.2  1  CE2_N          Carbohydrate esterase 2 N-terminal


Domain annotation for each model (and alignments):
>> 3-HAO  3-hydroxyanthranilic acid dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.3e-08   4.6e-05      48     109 ..      39     100 ..      32     102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.3e-08
                 EEE-SS-EEEEEEES-EEEEEEETTCCCEEEE-TTEEEEE-TT--EEEEE-TT-EEEEEEE- CS
       3-HAO  48 yhleegeeffyqkkGdmvlkvldegkardivireGeifllParvphsPqrfadsvGlvvere 109
                 +h+++g+e+f   +G++ ++v  +g+ + i++++G+if      +h       +  lv+e+e
  CTQ28099.1  39 WHINDGQEVFAVMDGQVAMHVKVDGEEQIIMLNAGDIFYAGVGCEHVAHPQGAARILVIEKE 100
                 8**************************************99999998666666666888876 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.4     2e-08   7.3e-05      13      70 ..      39      97 ..      26      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2e-08
                EECSSSEEEEEEEEESEEEEE..ECTE..EEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2 13 shrHpgedeffyVleGegelt..vdge..eveleaGdsvyfpagtpHrfrNtgdeparllvv 70
                +h+ +g+ e+f V +G+++++  vdge   + l+aGd++y   g +H  +  g  +ar+lv+
  CTQ28099.1 39 WHINDGQ-EVFAVMDGQVAMHvkVDGEeqIIMLNAGDIFYAGVGCEHVAHPQG--AARILVI 97
                8999999.*********6655348888545679************99888777..7777776 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.5e-06    0.0053       8      51 ..      36      76 ..      29     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.5e-06
                  -EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEE CS
  cNMP_binding  8 evifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlf 51
                   +i++ +d  ++++ v+ G+v++  ++ dg+e+++  l++Gd+f
    CTQ28099.1 36 PYIWHINDG-QEVFAVMDGQVAMH-VKVDGEEQIIM-LNAGDIF 76
                  588999998.68***********6.*******7665.9****99 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.7   9.6e+03       6      16 ..      18      28 ..      15      31 .. 0.72
   2 ?   12.8   0.1   2.8e-05       0.1       9      45 ..      40      76 ..      35      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.7
                   EEEEETTT-EE CS
  Peptidase_M23  6 idiaapkgtpV 16
                   +dia   gt+V
     CTQ28099.1 18 LDIANFSGTTV 28
                   67777778877 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.8e-05
                   EETTT-EEEESSSEEEEEEEEETTTEEEEEEEECTCE CS
  Peptidase_M23  9 aapkgtpVlAaadGtVvfagkkegyGnvviidhgdgy 45
                     + g++V A++dG+V    k +g  +++++++gd +
     CTQ28099.1 40 HINDGQEVFAVMDGQVAMHVKVDGEEQIIMLNAGDIF 76
                   6789************777777799******999854 PP

>> CE2_N  Carbohydrate esterase 2 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     5e-05      0.18      24      69 ..      21      70 ..       6      74 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5e-05
                EEEEEEEEEEEEEE......SSS-EEEEEEETTS--EEEEE-SS-EEEEE CS
       CE2_N 24 frftGtslsvrlkd....kedkgknrlaviiDgkrvkdlkldgeektytl 69
                ++f+Gt+++++ +d    ++ ++ +++  + Dg+ ++++k+dgee+++ l
  CTQ28099.1 21 ANFSGTTVRLHWTDqpyiWHINDGQEVFAVMDGQVAMHVKVDGEEQIIML 70
                79************999977777777778889999999999999986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 796.96
//
Query:       CTQ28100.1  [L=251]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-41  140.1   1.4    1.2e-40  139.5   1.4    1.3  1  Glyoxalase_3  Glyoxalase-like domain
  ------ inclusion threshold ------
      0.019   15.2   0.1       0.98    9.7   0.0    2.4  2  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
      0.034   14.3   0.0       0.21   11.8   0.0    2.2  3  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge


Domain annotation for each model (and alignments):
>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.5   1.4     2e-44   1.2e-40       1     176 []       6     197 ..       6     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 139.5 bits;  conditional E-value: 2e-44
  Glyoxalase_3   1 lDHvvlavpdleeaaarfarrlGftvtpggehpglgtaNalvmfgdgYlEllav.dpeapaperpr.lfgld...rlakgeglhtlalrtddidata 92 
                   +DH+v +v+++e+a++ f +   +++++gg+hpg+gt+Nal +fg +Y+E+la+ dp++  +  ++ l+++d    l ++e l ++alr+ddidat+
    CTQ28100.1   6 WDHAVQFVNQPEAAIEIF-AGQQLRAVAGGRHPGWGTRNALSYFGLTYIEFLAIaDPDELRAATDKfLLSRDaarLLPENEALFRVALRSDDIDATH 101
                   6*****************.778*******************************659999987777735555555333479***************** PP

  Glyoxalase_3  93 arlraaGvd....eagrrvrpdggdlrwrllfladealpaegalPfliqwgasdpa..........ladhpngalglaelviavsdpeataerlael 175
                   ++lr+ Gv+    ++g+r +p+g  +rwr++ +++++  a+  +Pf++qwg++d +          +a hp g+++l+++v++v +p+a++ r+++l
    CTQ28100.1 102 DQLRRTGVTvspiVDGQRNDPQGNIIRWRIFTIDGDT--AGLVYPFVLQWGEDDATrltrlraqrlDAPHPLGDIALEQAVFEVVNPQAVRDRWQAL 196
                   **********************************975..69************7666888888877777**************************98 PP

  Glyoxalase_3 176 l 176
                   l
    CTQ28100.1 197 L 197
                   6 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00016      0.98       7      95 ..      13     113 ..       7     124 .. 0.70
   2 ?    3.3   0.0     0.017     1e+02       2      27 ..     178     203 ..     177     233 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00016
                   -S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETTEEEEEEEESSTT...-THHH...............TS-EEEEEEEEES-HHHHHHH CS
  Glyoxalase_4   7 VeDleaavarfsallGvgpwqryrdepqevdlafallgsgsvqieLieplegp...eflae...............hgeglhhlaywvddldaavar 85 
                   V+  eaa++ f++   ++     r + ++ ++a+ + g +  +ie+ +  + +       +                 e l  +a++ dd+da+ ++
    CTQ28100.1  13 VNQPEAAIEIFAG-QQLRAVAGGRHPGWGTRNALSYFGLT--YIEFLAIADPDelrA---AtdkfllsrdaarllpENEALFRVALRSDDIDATHDQ 103
                   6666666666665.55555666677777888888888885..777776555442332...13335555677788989999***************** PP

                   HCTTTEEEEE CS
  Glyoxalase_4  86 leeqGfevvq 95 
                   l+  G++v +
    CTQ28100.1 104 LRRTGVTVSP 113
                   *****99864 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.017
                   EEEEE-S-HHHHHHHHHH.TT-EESS CS
  Glyoxalase_4   2 QigivVeDleaavarfsallGvgpwq 27 
                   Q  + V + +a  +r++allG+ p  
    CTQ28100.1 178 QAVFEVVNPQAVRDRWQALLGFPPLG 203
                   888999999************97754 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.28   1.6e+03       3      18 ..       7      22 ..       5      28 .. 0.86
   2 ?   11.8   0.0   3.5e-05      0.21      80     108 ..      90     118 ..      28     128 .. 0.80
   3 ?   -3.2   0.0       1.5   8.9e+03      19      32 ..     193     206 ..     181     240 .. 0.57

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.28
                EEEEEEESHHHHHHHH CS
  Glyoxalase  3 dhvallvgdleksldF 18
                dh++++v+++e++++ 
  CTQ28100.1  7 DHAVQFVNQPEAAIEI 22
                89*********99875 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.5e-05
                 EEEEHCHHHHHHHHHHHTTGEEEEEEECH CS
  Glyoxalase  80 ialdvedvgkaldrlkeagvkvvaepgrh 108
                 +al  +d+++++d+l++ gv v+++++ +
  CTQ28100.1  90 VALRSDDIDATHDQLRRTGVTVSPIVDGQ 118
                 68999******************998755 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.5
                 HHHHHTSEEEEEEE CS
  Glyoxalase  19 YtkvLGfklvkktd 32 
                 ++  LGf  + + +
  CTQ28100.1 193 WQALLGFPPLGEQV 206
                 66667777666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1875.93
//
Query:       CTQ28101.1  [L=314]
Description: Transcriptional regulator, AraC family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.1e-31  107.0   0.4    1.2e-30  106.6   0.4    1.2  1  Cupin_6       Cupin
    2.3e-19   69.4   3.1    3.3e-19   68.9   2.1    1.8  2  HTH_18        Helix-turn-helix domain
    6.9e-16   57.9   0.0    2.3e-07   30.8   0.0    2.4  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
    7.9e-05   22.6   0.0    0.00065   19.6   0.0    2.2  2  AraC_binding  AraC-like ligand binding domain
     0.0023   17.6   0.0     0.0053   16.4   0.0    1.6  1  Cupin_2       Cupin domain
      0.003   17.2   0.0      0.006   16.2   0.0    1.4  1  Cupin_3       Protein of unknown function (DUF861)


Domain annotation for each model (and alignments):
>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.4   4.1e-34   1.2e-30       1     184 []       7     195 ..       7     195 .. 0.84

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 4.1e-34
     Cupin_6   1 DvLsdlLagvrlrgalffrsaltapwslrfpag...lalhvvlrGscwlidpasgepvrLsagdvvllpggephvladspgtaplavieal..geasgl 94 
                 D+ s+lL+g+rl+g  ++r++ + p+++ f+a    +++h++ rG + l+  asge+ +L+ gd++++p g++h+l ++p+++ ++v++          
  CTQ28101.1   7 DLTSELLRGMRLSGVNYRRIETARPFGVGFSAVagkAQFHFISRGPVLLR-MASGEQFTLESGDALFIPNGDGHALLSDPQATVVNVAQLPseTV---- 100
                 6669************************99533446**************.66689*************************65554443333222.... PP

     Cupin_6  95 gegetgnngage.....gttvllcGayqfdgsvsdpllaaLPrvlvvaae.eaapelrallellaaElardrpGsqavldrLldlLlvqaLRawla 184
                    + +  +ag+     +++v+++G ++f+ ++ +pl+ a+P+v+ v +  +  pe+++ll  + +E+  +++G + +l+rL+d++ + ++R w+a
  CTQ28101.1 101 -CSTVSCINAGDqpdcpERAVIFSGCMDFELGGMQPLVKAMPEVMRVSSLlNIWPEIQPLLVAMERESLTRQAGYAGILARLADVVAALIVRGWVA 195
                 .2222222333334667999***************************444688*****************************************96 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         6   1.8e+04      26      40 ..     206     220 ..     203     225 .. 0.72
   2 !   68.9   2.1   1.1e-22   3.3e-19       1      80 [.     233     311 ..     233     312 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 6
                 HHHHHHHHHHHHHHH CS
      HTH_18  26 eylrrlRlerArrlL 40 
                 ++lr+ Rl +A  ++
  CTQ28101.1 206 QVLRDPRLAKAIYAM 220
                 678888888887665 PP

  == domain 2  score: 68.9 bits;  conditional E-value: 1.1e-22
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 la+++g+sr+ + ++f + +g+tp++yl++lR++ A + +++ +g+ + ++A+ lG+++l++Fsraf++++g++P++ r+
  CTQ28101.1 233 LAREAGLSRSLFAERFLAATGTTPARYLTELRMRLAVQYITH-EGQALEKVAFSLGYQSLAAFSRAFKRITGQPPGALRA 311
                 89*************************************986.*********************************9996 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   7.6e-11   2.3e-07       8      42 .]     227     261 ..     220     261 .. 0.91
   2 !   24.8   0.0   5.6e-09   1.7e-05       6      37 ..     274     306 ..     272     310 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 7.6e-11
                 T--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   8 nltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 n+++ed+A e+g+Srs F  +F ++tG tP  y+t
  CTQ28101.1 227 NWKVEDLAREAGLSRSLFAERFLAATGTTPARYLT 261
                 9********************************96 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 5.6e-09
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-H CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtP 37 
                 +++  +e +A  lg+ S   Fsr+Fk++tG+ P
  CTQ28101.1 274 HEGQALEKVAFSLGYqSLAAFSRAFKRITGQPP 306
                 566899************************866 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.2e-07   0.00065      20      65 ..      39      85 ..      33      99 .. 0.91
   2 ?   -0.1   0.0      0.27   7.9e+02      99     117 ..     202     224 ..     179     249 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.2e-07
                  TT-SEEEEEEEEE-EEE.EETTEEEEE-TT-EEEE-TTS-EEEEE-T CS
  AraC_binding 20 vhdeyvihyvteGtgrl.rlngrtydlgpGdlfLlppgepHdyesds 65
                  v +++++h + +G + l +  g+++ l++Gd +++p g+ H + sd+
    CTQ28101.1 39 VAGKAQFHFISRGPVLLrMASGEQFTLESGDALFIPNGDGHALLSDP 85
                  67899************9999999*****************998887 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.27
                   .....E---TTTHHHHHHHHHHH CS
  AraC_binding  99 a....lledeelaqllralfrll 117
                        +l+d++la+++ a++++ 
    CTQ28101.1 202 TgwvqVLRDPRLAKAIYAMHQRP 224
                   24455999********9999875 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.8e-06    0.0053      20      58 ..      43      82 ..      40      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.8e-06
                EEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT-EEEEE CS
     Cupin_2 20 deffyVleGegelt.vdgeeveleaGdsvyfpagtpHrfr 58
                 +f ++ +G + l+   ge+++le Gd++++p g  H++ 
  CTQ28101.1 43 AQFHFISRGPVLLRmASGEQFTLESGDALFIPNGDGHALL 82
                48999999**99**667********************975 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     2e-06     0.006      19      60 ..      36      77 ..      34      92 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2e-06
                EEECESSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTE CS
     Cupin_3 19 frltyeedEfcyileGevkvtpeggetvelraGDlvvlpkgl 60
                f+ + ++ +f +i +G v ++ ++ge+++l+ GD++++p g 
  CTQ28101.1 36 FSAVAGKAQFHFISRGPVLLRMASGEQFTLESGDALFIPNGD 77
                66778889999****************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2575.53
//
Query:       CTQ28102.1  [L=412]
Description: Purine ribonucleoside efflux pump NepI [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-33  116.0  70.1    4.3e-32  111.4  60.3    2.1  2  MFS_1       Major Facilitator Superfamily
    6.6e-10   38.4  15.6    6.6e-10   38.4  15.6    2.9  3  Sugar_tr    Sugar (and other) transporter
  ------ inclusion threshold ------
       0.12   11.3  34.7       0.22   10.4  12.0    2.1  2  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4  60.3   7.2e-36   4.3e-32       1     346 [.      24     349 ..      24     351 .. 0.86
   2 !   14.5   5.7   2.1e-06     0.013     105     182 ..     324     400 ..     321     409 .. 0.91

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 7.2e-36
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+l++f  + a ++ +++l+  +a++lg+s+  +g ++t+ al+a+v+ l+++  + ++ rr+vl++  +l ++++l+ +fa sl +ll++r+l G++ 
  CTQ28102.1  24 LALGVFGLIVAEFLPASLLT-PMASSLGVSEGMAGQAVTATALVALVTGLLIATATRNIDRRWVLMFFSVLQIVSSLMVAFADSLAFLLLGRLLLGIAI 121
                 57889999999999999999.8*****************************************99999999999988888955555************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 g++++++ a + +++p  + ++a++++ +++s++++++++lg++l +++gWr vf+++ai slla++   + l++ p+ r+ + ++            +
  CTQ28102.1 122 GGFWAMSTATAMRLVPAAHVPKALAIIFSAVSVATVVAAPLGSYLGELIGWRNVFILCAIPSLLALL---WQLWVLPSMRPESVGTFS----------T 207
                 ****************************************************************977...444444444444444444..........3 PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglal 293
                 +++ l+++  l  +l+++l+f  g+++++t+l  +l +v   s    +l+l+g  ++++ ++g     +a++l+ r     rl+lal+ l++++l+l++
  CTQ28102.1 208 LFRVLRRPGMLGGMLATILIF-SGHFAFFTYLRPFLETVAQASiegvSLILLG--FGVANFIG---TSVASYLLSR---SLRLTLALVPLMMSVLALLM 297
                 499999999776455555555.59999999999999*******7633333333..55555555...99******99...89****************** PP

       MFS_1 294 lavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntags 346
                 + + + +vl+ l+++l+Gf++g+v +++ ++++  +p +ea +a gl     +
  CTQ28102.1 298 VTFGHLTVLAGLLVALWGFAFGLVPVAWSTWLATTVP-DEAESAGGLLVASIQ 349
                 ************************************8.999999988776555 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.1e-06
       MFS_1 105 agaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrk 182
                 a  +++a  +p+ e  +a gll a+++l++  g++ gg++ ++ g ++vf   ++++l a+v++++ ++++p++r+ +
  CTQ28102.1 324 AWSTWLATTVPD-EAESAGGLLVASIQLAISAGAAGGGAVFDLHGASGVFTGSGLLLLSAMVIVFAAVRVKPVARADQ 400
                 667899999999.99***********************************************9999999999888766 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4  15.6   1.1e-13   6.6e-10      49     191 ..      57     193 ..      40     198 .. 0.91
   2 !   11.4  10.3   1.8e-05      0.11     243     372 ..     206     325 ..     196     328 .. 0.71
   3 ?   -0.8   1.0     0.086   5.1e+02      45      96 ..     338     389 ..     328     396 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.1e-13
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlai 147
                 g  v ++ ++a++++l++ +++  ++R+++l++++vl ++++++ a+a+   s+  l++gR+l+Gi++G++ ++++ ++  + p+++  +   +  +a+
  CTQ28102.1  57 GQAVTATALVALVTGLLIATATRNIDRRWVLMFFSVLQIVSSLMVAFAD---SLAFLLLGRLLLGIAIGGFWAMSTATAMRLVPAAHVPKALAIIFSAV 152
                 55677888999999999999*****************************...9***********************************8888888899* PP

                 HHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS CS
    Sugar_tr 148 tfGilvaaifglglnktsnadgwrillglqlvpallllilllfl 191
                 ++  +vaa +g  l +  +   wr  + l+++p+ll l++ l++
  CTQ28102.1 153 SVATVVAAPLGSYLGELIG---WRNVFILCAIPSLLALLWQLWV 193
                 **********999998888...************9998887554 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 1.8e-05
                 TTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..H CS
    Sugar_tr 243 kellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgiva 338
                 ++l++    r++ ++g +l+ +  ++G++a++ y   ++e++         l+ +++gv nf+ t va +l +r  R tl l+ ++ m+++++++   +
  CTQ28102.1 206 STLFRV--LRRPGMLGGMLATILIFSGHFAFFTYLRPFLETVAQASIegvSLILLGFGVANFIGTSVASYLLSRSLRLTLALVPLM-MSVLALLMV--T 299
                 344444..899*************************99998865555677999********************9988877776644.444444442..2 PP

                 HHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHH CS
    Sugar_tr 339 lllvakskaasivaivfialfialfalgwgpvpw 372
                 + +  +     ++a  ++al+   fa+g+ pv w
  CTQ28102.1 300 F-GHLT-----VLAGLLVALW--GFAFGLVPVAW 325
                 2.2222.....3444444444..66666777777 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.086
                 ..HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-T CS
    Sugar_tr  45 svlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaa 96 
                 ++  gl+v++ ++   +G+  +g + d  G   ++  +++l++ + v+ +aa
  CTQ28102.1 338 ESAGGLLVASIQLAISAGAAGGGAVFDLHGASGVFTGSGLLLLSAMVIVFAA 389
                 4566899999999999999999999999999998888888887777777666 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  12.0   3.6e-05      0.22     253     374 ..      47     170 ..      17     180 .. 0.80
   2 ?    5.0  19.5    0.0015       9.2     152     383 ..     148     372 ..     146     373 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.6e-05
  MFS_1_like 253 kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgq 351
                 ++lg s+ ++G++v+ +++  +++ ++    ++ +  +++l++  ++ i+  l++a+ +++ ++l+  +L gi++g +wa+ +  + +++p  +  +  
  CTQ28102.1  47 SSLGVSEGMAGQAVTATALVALVTGLLIATATRNIDRRWVLMFFSVLQIVSSLMVAFADSLAFLLLGRLLLGIAIGGFWAMSTATAMRLVPAAHVPKAL 145
                 689****************************************************************************************99999999 PP

  MFS_1_like 352 gllsgl...yfglGralGsliGGllw 374
                 +++ ++      +   lGs++G  l+
  CTQ28102.1 146 AIIFSAvsvATVVAAPLGSYLG-ELI 170
                 9864330002334444555554.333 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0015
  MFS_1_like 152 lfGsvGyaifafitGilidhysvnllpysallyvlaallvisllvvl.ilnetekesklkvtkslqvllnilknpeviifllvalilgmswgiienFlf 249
                 +f++v+ a+++++    +  y  +l++ + +++++a+  +++ll  l +l+ ++ es ++ +   + l+++l++p +++ +l+++++   + ++ ++l 
  CTQ28102.1 148 IFSAVSVATVVAA---PLGSYLGELIGWRNVFILCAIPSLLALLWQLwVLPSMRPES-VGTF---STLFRVLRRPGMLGGMLATILIFSGHFAFFTYLR 239
                 5666666544432...33334444555566777777776666666551455555554.4444...5799******************999********* PP

  MFS_1_like 250 lYL.kelgasntllGslv.algvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksl 346
                  +L    +as + ++ ++  +g va+ +   +a++ll +    +l ++ l++ +l +l++ + + ++l+ ++ +L g++fgl+ +a  ++ +  +p+++
  CTQ28102.1 240 PFLeTVAQASIEGVSLILlGFG-VANFIGTSVASYLLSRSLRLTLALVPLMMSVLALLMVTFGHLTVLAGLLVALWGFAFGLVPVAWSTWLATTVPDEA 337
                 ***4445566555554430444.555556688999999999999******************************************************* PP

  MFS_1_like 347 eatgqgllsglyfglGralGsliGGllwdlksaiflF 383
                 e+ g  l++++   +    G+  GG+++dl +a  +F
  CTQ28102.1 338 ESAGGLLVASIQLAI--SAGAAGGGAVFDLHGASGVF 372
                 **9988888886555..67999********9998777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1024  (0.0571142); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.20s 00:00:00.78 Elapsed: 00:00:00.36
# Mc/sec: 3433.32
//
Query:       CTQ28103.1  [L=329]
Description: Vanillate O-demethylase oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-12   45.2   1.3    1.4e-11   44.1   1.3    1.6  1  Fer2           2Fe-2S iron-sulfur cluster binding domain
    1.3e-05   25.8   0.1    8.6e-05   23.1   0.0    2.3  2  NAD_binding_1  Oxidoreductase NAD-binding domain
     0.0027   17.7   0.0       0.05   13.7   0.0    2.3  2  Fer2_4         2Fe-2S iron-sulfur cluster binding domain
      0.004   17.3   0.3       0.56   10.3   0.3    2.6  1  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   1.3   3.2e-15   1.4e-11       9      73 ..     251     315 ..     243     318 .. 0.80

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 3.2e-15
                 EEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE.CTT..SSSSTHHHHHTTEEEEGG CS
        Fer2   9 evevadgettlldaaeenggidipysCggggCgtClvevlegev.qsd..etelegeeldegklrlaC 73 
                   +v+ g++t+ ++++e  g+++p+sC++g Cg+Cl+ v eg+v ++d  ++e e++  +e+  +l+C
  CTQ28103.1 251 HWPVP-GDKTIAQVLQEH-GVAVPLSCEMGICGACLTPVREGTVdHRDtvQSEAEKQA-AEQHIALCC 315
                 55664.5555******98.**************************8887888888887.555566777 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.9e-08   8.6e-05       1     108 [.     116     208 ..     116     209 .. 0.71
   2 ?   -3.0   0.0       2.6   1.1e+04      80      98 ..     297     314 ..     288     318 .. 0.58

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.9e-08
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    ++a+G Gi+P++++ +a+++        +l y + + ++ ++  e+ +      g+++ +++ s+e +++        ++l+++l   ++++t vy
     CTQ28103.1 116 LLAAGIGITPLLAMAHARAAS---GASFTLHYYVSRAQEAAFATEIARQ--LSGGNCQ-IHC-SDEGQSP-------RQRLAQDLGA-PDADTRVY 196
                    79******************7...4556666666666666555555433..3555775.456.4555555.......4666666666.79****** PP

                    EECSHHHHHHHH CS
  NAD_binding_1  97 vCGppgMikavr 108
                    +CGppg+++ vr
     CTQ28103.1 197 FCGPPGFMARVR 208
                    ********9887 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.6
                    HHHHHHHHHSSTTEEEEEE CS
  NAD_binding_1  80 alleellslkkeethvyvC 98 
                     +  e+++ + +e+h+ +C
     CTQ28103.1 297 TVQSEAEK-QAAEQHIALC 314
                    34444444.5666677666 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.1e-05      0.05       3      38 ..     242     277 ..     241     284 .. 0.92
   2 ?    1.8   0.0     0.055   2.5e+02      65      76 ..     281     292 ..     276     298 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
      Fer2_4   3 pvtltfDGkevtvpeGdtvasAllangvdvprscky 38 
                 ++tlt  G++  vp ++t+a++l+++gv vp sc  
  CTQ28103.1 242 TITLTSTGEHWPVPGDKTIAQVLQEHGVAVPLSCEM 277
                 589999*************************99986 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.055
      Fer2_4  65 racstpvedGlk 76 
                  ac tpv++G +
  CTQ28103.1 281 GACLTPVREGTV 292
                 59*******976 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.3   0.00013      0.56       3      21 ..     113     131 ..     111     212 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00013
                    xxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   3 nvllvagGiGitpfisilk 21 
                    +v+l+a+GiGitp++ ++ 
     CTQ28103.1 113 HVVLLAAGIGITPLLAMAH 131
                    699**********998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2773.57
//
Query:       CTQ28104.1  [L=345]
Description: Vanillate O-demethylase oxygenase subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-17   62.1   0.1    5.9e-17   61.4   0.1    1.4  1  Rieske    Rieske [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.1   3.3e-21   5.9e-17       2      83 ..      26     104 ..      25     117 .. 0.92

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 3.3e-21
                 EEEEEEGGGC-TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEETTSBEEE-TTHH CS
      Rieske   2 wvavakesdvpegdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwaydadGkvikgPapr 83 
                 w++va++ d+  g p++ ++++e+lv++r  +g+v++  dvC+Hrg+pl+ g  + ++ ++Cp+Hg ++ +dG++  +P+  
  CTQ28104.1  26 WHPVARACDIA-GAPVKATLLDEQLVIYR-IKGQVVVARDVCPHRGVPLTLGFHE-EEGIVCPYHGLRFGEDGRCNRIPSSP 104
                 99********7.99***************.6******************999995.559*******************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2986.08
//
Query:       CTQ28105.1  [L=307]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-33  114.2   5.5    6.8e-33  113.8   5.5    1.2  1  LysR_substrate  LysR substrate binding domain
    3.5e-18   65.3   0.4    1.2e-17   63.6   0.4    1.9  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.014   15.0   0.1      0.028   14.0   0.1    1.5  1  HTH_50          Helix-turn-helix domain
      0.025   14.4   0.0      0.084   12.7   0.0    1.8  2  HTH_30          PucR C-terminal helix-turn-helix domain
      0.026   13.9   0.0      0.066   12.6   0.0    1.7  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.052   13.7   2.5      0.069   13.3   0.0    2.4  3  HTH_28          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   5.5   2.3e-36   6.8e-33       4     206 ..      91     294 ..      88     297 .. 0.97

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 2.3e-36
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsl 98 
                      rg++++g++++la+  ++ +la+  a  P +el+l+++ds+++ +++++ +lD++++++p+ ++gl +  +ae ++ +v++pdhpLa+ + +sl
      CTQ28105.1  91 KRGSVSVGMVQALAEGGFAAALAEIIASWPWLELDLQVADSHTVSQKVRQADLDVGLILDPQGQAGLSVLAFAELEVGIVMRPDHPLAGAKALSL 185
                     69********************************************************************************************* PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTCC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgre 192
                      +L  e++i+  ++   ++++  + r++ ++p+ ++++n++  +++lv+ G G++ll+ + v de++ g+l ++pl+   l+  +l+l++ ++r+
      CTQ28105.1 186 GELSLERHIVPGAPLIVHERVALLYRHHDFAPENTISCNDIRLIKSLVLRGSGVTLLSLLDVLDEVQCGQLAFVPLRSTLLRpLTLALCTAPSRQ 280
                     **********887777******************************************************************************* PP

                     CHHHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidflre 206
                     ls+ ++  i+ l +
      CTQ28105.1 281 LSRPAQMAIQTLSA 294
                     ******99998865 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.4     4e-21   1.2e-17       5      60 .]       9      64 ..       6      64 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 4e-21
                HHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  5 rlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++f+ava++gs++rAAe+L++s +a+ rqi + Ee++g+pLfeR   glr+T aGe
  CTQ28105.1  9 HYFIAVARCGSLRRAAEQLHISASAINRQILQAEEAFGTPLFERLPEGLRMTTAGE 64
                69*****************************************************7 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   9.4e-06     0.028      20      43 ..      14      37 ..      12      40 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.4e-06
      HTH_50 20 yekYpStRklAkrLGvShtaiank 43
                +++ +S R +A++L++S +ai + 
  CTQ28105.1 14 VARCGSLRRAAEQLHISASAINRQ 37
                66778****************876 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.8e-05     0.084      13      44 ..      18      49 ..      11      55 .. 0.91
   2 ?   -2.6   0.0       1.7     5e+03       3      20 ..     290     307 .]     289     307 .] 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.8e-05
                T-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30 13 gnisatAkaLhvHrnTlryRLrrieellgldl 44
                g+++++A++Lh++   ++  + ++ee +g +l
  CTQ28105.1 18 GSLRRAAEQLHISASAINRQILQAEEAFGTPL 49
                99**************************9887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.7
                 .HHHHHHHTTT-HHHHHH CS
      HTH_30   3 eTLraylenggnisatAk 20 
                 +TL a +e+   +s +A+
  CTQ28105.1 290 QTLSAVIESMATVSPAAR 307
                 899999999888888885 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.2e-05     0.066      15      49 ..       6      39 ..       2      41 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
  HTH_Tnp_ISL3 15 rleayilelllesrsvkavArqlgvSwtTVwrild 49
                  r++ y ++ ++ + s + +A+ql++S++ ++r + 
    CTQ28105.1  6 RFAHYFIAVARCG-SLRRAAEQLHISASAINRQIL 39
                  4444444444555.******************876 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.3e-05     0.069       8      40 ..      13      46 ..      11      51 .. 0.93
   2 ?   -2.2   0.1       1.6   4.8e+03      31      39 ..      72      80 ..      68      84 .. 0.84
   3 ?   -1.9   0.1       1.3   3.9e+03       6      18 ..     100     112 ..      98     116 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
      HTH_28  8 llaaGhsvreaArelgisrrtv.yrWikryeegG 40
                ++a+++s r aA++l+is + + ++ +++ e++G
  CTQ28105.1 13 AVARCGSLRRAAEQLHISASAInRQILQAEEAFG 46
                689************************9999988 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
      HTH_28 31 rWikryeeg 39
                rW k +++ 
  CTQ28105.1 72 RWQKEFRQT 80
                9*****995 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.3
      HTH_28   6 ikllaaGhsvrea 18 
                 +++la+G+ ++++
  CTQ28105.1 100 VQALAEGGFAAAL 112
                 5566666544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2309.36
//
Query:       CTQ28106.1  [L=384]
Description: FAD-dependent urate hydroxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-21   76.0   0.0    3.7e-21   75.8   0.0    1.1  1  FAD_binding_3  FAD binding domain
    1.9e-07   30.8   0.0     0.0018   17.7   0.0    2.2  2  Amino_oxidase  Flavin containing amine oxidoreductase
    8.1e-06   26.0   0.2      2e-05   24.7   0.2    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      2e-05   24.0   0.1     0.0036   16.6   0.7    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00034   19.8   1.5    0.00053   19.2   1.5    1.3  1  FAD_binding_2  FAD binding domain
     0.0015   17.8   0.1      0.021   14.1   0.6    2.0  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.017   14.2   1.1      0.025   13.7   1.1    1.2  1  GIDA           Glucose inhibited division protein A
      0.024   14.2   2.0       0.12   11.9   1.0    2.1  2  DAO            FAD dependent oxidoreductase
      0.087   11.5   1.1       0.17   10.5   0.7    1.6  2  HI0933_like    HI0933-like protein
       0.13   12.2   0.7         26    4.8   0.0    3.0  3  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0     2e-24   3.7e-21       3     346 ..       2     337 ..       1     340 [. 0.79

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 2e-24
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH....CHH CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradle....les 94 
                    + +++GaG  Gl++a  L++ G+++ + e  ++  + + a  + +  +  + +lG+ d ++  g p   m+     +  +  + +++ +    +e 
     CTQ28106.1   2 KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS--G--ENMTQFSlaplIER 93 
                    578*************************************************************8888776443333..1..2233322336689* PP

                    CST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHH.HTGGEEEEEEEEEEEEE CS
  FAD_binding_3  95 spervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrkt.lgiefegeetvyeagvl 188
                    +++r++ ++  el+r +++     g  +v+f+++v+  e+d +gvt  ++d ++      + + l++aDG +S+ r   lg++   +++   ag +
     CTQ28106.1  94 TGSRPCPVSRAELQREMLDY---WGrDSVQFGKRVTRCEEDADGVTVWFTDGSS-----ASGDLLIAADGSHSALRPWvLGFT--PQRRY--AGYV 177
                    *******************9...666789999******************9974.....456**************9625665..44444..6677 PP

                    EEEEEC-SCCCTTC...CEEEEECCTTEEEEEECCETEEEEEEEEE..CCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEEEEEEEE.EEE CS
  FAD_binding_3 189 dvlfdadlsdivep...lvlilsaesrgvmviPlentlerfyvqve..araekeersekfteeevkarlreivgektldveieevsawtvaq.rva 278
                    + +  +++++  +p   ++    + +r v ++P++ ++  f + v+  a+  +++++ + + +++ a +   v++  +  +++ +++ ++++    
     CTQ28106.1 178 NWNGLVEIDEALAPgdqWTTFVGEGKR-VSLMPVSAGRFYFFFDVPlpAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDiEPF 272
                    777666776666667653333333444.47778877555555555500555555557777889***************************993468 PP

                    SSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHH CS
  FAD_binding_3 279 ekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavv 346
                    +++ +grv l GDA H ++P  GqG   a++Dav L+  + +        + L  Ye++r ++++++v
     CTQ28106.1 273 SRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQTRD---IAAALREYEAQRCDRVRDLV 337
                    9*********************************98855544333...56789999999988888776 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   7.9e-05      0.14       1      23 [.      10      32 ..      10      35 .. 0.91
   2 !   17.7   0.0     1e-06    0.0018     205     266 ..      83     159 ..      32     178 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.9e-05
                   HHHHHHHHHHHHTTEEEEEEESS CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEar 23
                   + GL+aA  L++ G d+ v+Ea 
     CTQ28106.1 10 IGGLSAAVALKQSGIDCDVYEAV 32
                   68*******************96 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1e-06
                    E.........TTHTHHHHHHHHH.......TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-HHHHH CS
  Amino_oxidase 205 p.........rgGlsqlpealae.......elrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvplgvlk 266
                    +         r+G +  p + ae       + +++++++++rV++ + ++dgvtv+++dg++ ++D  +++++ ++ +
     CTQ28106.1  83 TqfslaplieRTGSRPCPVSRAElqremldYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDL-LIAADGSHSA 159
                    05555555555555555555555544444477889*******************************9.5566666666 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.2   1.1e-08     2e-05       1      28 [.       5      32 ..       5      70 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.1e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   ++GaG++Gl+aA +L++ g+d++++e+ 
     CTQ28106.1  5 VIGAGIGGLSAAVALKQSGIDCDVYEAV 32
                   8*************************85 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.7     2e-06    0.0036       2      33 ..       2      33 ..       1      62 [. 0.83
   2 !    4.8   0.0    0.0077        14     175     237 ..      96     156 ..      71     193 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlveleg 33
                 + +viG+G++Gl+aa  l+q+g++  ++e+ +
   CTQ28106.1  2 KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK 33
                 679********************999997433 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0077
                  SSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 175 drllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGv 237
                  +r+++    el++++ ++  ++ v  ++g++v++ +++ + ++v  +dg++   dl++ a G 
   CTQ28106.1  96 SRPCPVSRAELQREMLDYWGRDSV--QFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGS 156
                  566666666666677777766655..5679****************************99985 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.5   2.9e-07   0.00053       2      33 ..       3      34 ..       2      51 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.9e-07
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   +iViG+G++GL+AA+++++ G ++ v e ++e
     CTQ28106.1  3 AIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE 34
                   69**********************99988765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.6   1.2e-05     0.021       1      45 [.       4      51 ..       4      85 .. 0.79
   2 ?    1.1   0.0       0.1   1.9e+02     224     271 ..     112     160 ..      71     169 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilE....kgnignsiyrypkemtf 45
                 i+iGaG  Gl+aa++lk++g+ d  + E     + +g++i+ +p+  + 
   CTQ28106.1  4 IVIGAGIGGLSAAVALKQSGI-DCDVYEavkeIKPVGAAISVWPNGVKC 51
                 89*******************.455554110056789999999987665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.1
  Pyr_redox_3 224 e..ekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdl 271
                     ++  v f ++v++ +e+   ++v ++dg++  + d  ++a G ++ l
   CTQ28106.1 112 DywGRDSVQFGKRVTRCEEDADGVTVWFTDGSS-ASGDLLIAADGSHSAL 160
                  3444447889999*****************977.5668888888988766 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.1   1.4e-05     0.025       2      28 ..       3      29 ..       2      54 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.4e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLi 28
                 iViG+G  G+ AA+a++++G++   +
  CTQ28106.1  3 AIVIGAGIGGLSAAVALKQSGIDCDVY 29
                69*******************998776 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.0   6.8e-05      0.12       2      28 ..       3      31 ..       2      40 .. 0.84
   2 ?    0.8   0.0      0.17     3e+02     165     298 ..     121     244 ..     115     292 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.8e-05
                EEEECTSHHHHHHHHHHHHTT..EEEEES CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllek 28
                 ++iG+Gi Gls+A +L + g    ++e+
  CTQ28106.1  3 AIVIGAGIGGLSAAVALKQSGidCDVYEA 31
                58***************888877666665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.17
                 ESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH..HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE...EEETTTTEEEEEE CS
         DAO 165 egtevtgleeedgkvwgverttpgendaadavVnaaGawsd..llgllkeldlpispvrgqvlvlkplseklvspaailpvpe...tdddgrgvyvtpr 258
                 +g +vt+ ee+  ++++v   t+g+  + d ++ a G +s            l ++p r +   + +++   +  +a++p  +    + +g+ v ++p 
  CTQ28106.1 121 FGKRVTRCEED-ADGVTVW-FTDGSSASGDLLIAADGSHSAlrP------WVLGFTPQRRYAGYV-NWNGLVEIDEALAPGDQwttFVGEGKRVSLMPV 210
                 56677777554.2334442.333554234778888888875221......112446666666555.443333333355555555557777888888887 PP

                 TTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGG CS
         DAO 259 kdgrvlvGgtadeesgdddpevdeedidellealrklfPq 298
                   gr+++        +   p+  +ed+d l+  l+++f +
  CTQ28106.1 211 SAGRFYFFF------DVPLPAGLAEDRDTLRADLSRYFAG 244
                 778888732......2333688888999999999999866 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.7   9.5e-05      0.17       2      35 ..       2      35 ..       1      37 [. 0.92
   2 ?   -2.2   0.0      0.68   1.2e+03     126     166 ..     119     158 ..     115     161 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.5e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakkl 35
                 + iviG+G  Gl aA+++++ g +  ++e+ k++
   CTQ28106.1  2 KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI 35
                 689*************************998765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.68
                  EE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS CS
  HI0933_like 126 lrletevksvekeedgkfrvktkseeeleadklvlAtGGlS 166
                  ++  ++v++ e+++dg ++v  +++++ + d l+ A G+ S
   CTQ28106.1 119 VQFGKRVTRCEEDADG-VTVWFTDGSSASGDLLIAADGSHS 158
                  5678899999999999.666665999999999999999988 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.027        49       2      19 ..       5      22 ..       4      40 .. 0.84
   2 ?    4.8   0.0     0.014        26     121     154 ..     122     155 ..     108     157 .. 0.90
   3 ?   -0.7   0.0      0.68   1.2e+03      15      42 ..     251     281 ..     249     288 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.027
  NAD_binding_9  2 ivGaGprGlavlerLlar 19
                   ++GaG+ Gl+++ +L ++
     CTQ28106.1  5 VIGAGIGGLSAAVALKQS 22
                   8***********999776 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.014
  NAD_binding_9 121 raevvdleeradgqavlladgaslaadaVvLAlG 154
                     ++v+++ee+adg++v  +dg+s   d ++ A G
     CTQ28106.1 122 GKRVTRCEEDADGVTVWFTDGSSASGDLLIAADG 155
                    579************************9999877 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.68
  NAD_binding_9  15 rLlara..kkkspleitlfdp.sepgagrvw 42 
                    +L+a    ++++++ei+ ++p s + +grv+
     CTQ28106.1 251 KLIAALdpQTTNRIEIHDIEPfSRLVRGRVA 281
                    5666666778899********6677989886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2965.67
//
Query:       CTQ28107.1  [L=459]
Description: Xanthine permease XanQ [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-82  275.4  35.5    8.3e-82  274.9  35.5    1.1  1  Xan_ur_permease  Permease family
  ------ inclusion threshold ------
       0.27    9.4   0.2       0.41    8.8   0.2    1.2  1  YfhO             Bacterial membrane protein YfhO


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.9  35.5   9.3e-86   8.3e-82       4     387 ..      23     407 ..      21     409 .. 0.95

  Alignments for each domain:
  == domain 1  score: 274.9 bits;  conditional E-value: 9.3e-86
                      HHHHHHHHHHHHHHHHHHHHTTTS-..........H.HHHHHHHHHHHHHHHH...HTTT-----EEE-GGGHHHHHGGG-.........HHHH CS
  Xan_ur_permease   4 lllglQhllamfaalvvvPllvgdalglaeelr.qlisatllasGiatllqll...ifgirlpillgssfafvtalmialGsa.....edieia 88 
                      ++ +lQh+la +++++++Pl++g+ lgl  +   +lis++llasGi+t+lq      +g ++  ++g+sfaf++ +++a G+         +++
       CTQ28107.1  23 FFSALQHVLAGLVGIITPPLIIGATLGL-GDWLpYLISMSLLASGIGTFLQSNrvwGIGAGMICMQGTSFAFLG-VTVAGGMWvkaqgGGPQDM 114
                      789**********************988.66666*****************99887899***************.77788866888876789** PP

                      HHHHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHHHHHHHHHSSSTTT CS
  Xan_ur_permease  89 lagllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaavegltvvslkllllavvvllvilllsvflkglf 182
                      +a+l+g  +va+++ +++s+++    l ++++P++tg v+ liG+sl+++ v +  gg++a   + ++s  +++l+  +l vi+lls+ ++  +
       CTQ28107.1 115 MAMLFGVNFVAALVPVIVSRFIE--PLKKIFTPIITGSVIALIGISLIKVSVINWCGGEKA---EDFASMSNIALGAGTLGVIVLLSCAKNRWL 203
                      *********************99..6************************99988888744...568*************************** PP

                      TTHHHHHHHHHHHHHHHHHHHTTSSHHHHS-SS-----------HH..H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TII...IIIHHHHH CS
  Xan_ur_permease 183 sqlpiLigiiagwllalfmgivnlspevseapwfqlpsplkfgtplfnlgliltvlavalvavvesvGdiravakvvgrslkp...kpdlrral 273
                      ++ ++++gi++g+++a   g+++l +    + +f lp++++fg + fn +++l v +v lv ++e+vGd++a + ++++s+++     +l+ ++
       CTQ28107.1 204 RLSSVVVGIAVGCIAAGLSGQFHLHS--LGDTLFRLPTLFPFGFQ-FNSAIFLPVALVSLVCILEAVGDLTANSLISQQSVDDrafRNRLKGGI 294
                      **************************..5788999**********.9************************************9********** PP

                      HHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SH CS
  Xan_ur_permease 274 ladGlatllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdldsa 367
                      ladG++++++++l a+p+tt+a+n+Gv+++t+vasr+v+ ++gvilillgl+p +++ll  IP+pvlgG+++v+fg ++a+g++++ +  l  +
       CTQ28107.1 295 LADGVSCMVAAMLCAFPNTTFAQNNGVIQMTGVASRYVGRYIGVILILLGLFPPVGELLRQIPAPVLGGATMVMFGCVVAAGIRIITQTPLS-R 387
                      *******************************************************************************************9.* PP

                      HHHHHHHHHHHHHHH----- CS
  Xan_ur_permease 368 rnllivavslvlGlgvatvp 387
                      r +liv+++ + Glgv  vp
       CTQ28107.1 388 RDVLIVGLAFGAGLGVESVP 407
                      ***************98776 PP

>> YfhO  Bacterial membrane protein YfhO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.2   4.6e-05      0.41     352     450 ..     130     230 ..     122     244 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 4.6e-05
        YfhO 352 llaaealkelkql...k.klkllaailllvlllliilllknkksynfltssqlllgllllllalllllllllkkkkkklvllllllvlvlelggnayls 446
                 +++ ++++ lk++     + + +a+i +++  + +i ++  +k ++f+++s++ lg+  l +++ll +    ++ +++ v++ ++++ ++ +g ++++ 
  CTQ28107.1 130 VIVSRFIEPLKKIftpIiTGSVIALIGISLIKVSVINWCGGEKAEDFASMSNIALGAGTLGVIVLLSCA-KNRWLRLSSVVVGIAVG-CIAAGLSGQFH 226
                 5566677767766554325556666666666667999*****************999999999888884.32333333333333333.66777777777 PP

        YfhO 447 lnki 450
                 l+++
  CTQ28107.1 227 LHSL 230
                 6665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3499.84
//
Query:       CTQ28108.1  [L=166]
Description: OHCU decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-39  133.8   2.5      8e-39  133.6   2.5    1.0  1  OHCU_decarbox  OHCU decarboxylase
     0.0051   15.6   1.2     0.0058   15.4   1.2    1.0  1  DUF935         Protein of unknown function (DUF935)
     0.0067   15.9   7.3     0.0097   15.4   7.3    1.2  1  DUF2336        Uncharacterised protein conserved in bacteria 


Domain annotation for each model (and alignments):
>> OHCU_decarbox  OHCU decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   2.5   1.3e-42     8e-39       1     155 []       8     161 ..       8     161 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.3e-42
                    HCS-HHHHHHHHCCCSTTHHHHHHHHHCGS-SSHHHHHHHHHHHCCCS-HHHHHHHHCTS--TTSCCCHHTHCHHHHHHHCCCTTTTCHHHHHHHH CS
  OHCU_decarbox   1 nalseeeltavldtlfepspwlaelalarpfssyeaLiaavaealealseeelleilsaHPrLGekaakkkklsalsrkEqaglglaaseeeleeL 96 
                    n+ls++e++ +l+ ++   +w + l+  rpf+s +aL++a+++a++++ e+el+++lsaHPr+Gek + +++ +alsr+Eq+++  +++e  +++L
     CTQ28108.1   8 NSLSKDEAAGLLAPCVAIPAWGEMLVSLRPFASRHALLQAARKAMANWGEDELNAALSAHPRIGEKPTGSQAHAALSRQEQSSVD-SENERLAQAL 102
                    799************************99*************************************88899**************.9********* PP

                    HHHHHHHHHHHSS-----GCC--HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHH CS
  OHCU_decarbox  97 aelnaeYeekFGlrfvvfvngrsrkeIlaelerRlendpekElrealqemckIardRlk 155
                    +e na+Ye++FG +f++ ++grs +e+l++l rRl+++ ++E++eal+++++I+ +Rl+
     CTQ28108.1 103 REGNARYEARFGRVFLIRAKGRSGEEMLQALTRRLQHTADEEVAEALAQLREITMLRLE 161
                    *********************************************************96 PP

>> DUF935  Protein of unknown function (DUF935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.2   9.6e-07    0.0058     429     509 ..      69     152 ..      31     163 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.6e-07
      DUF935 429 laakaaaalaaaaaaeaaeqdaldal...adealeeaeaalepllapvlelleeaesleelrerlaelypdmdaeelaelLara 509
                 +  ++++ ++a+aa +++eq+++d     +++al+e +a+ e+ + +v+ + +++ s ee++++l + +++ ++ee+ae+La++
  CTQ28108.1  69 RIGEKPTGSQAHAALSRQEQSSVDSEnerLAQALREGNARYEARFGRVFLIRAKGRSGEEMLQALTRRLQHTADEEVAEALAQL 152
                 2222222344566666677776665500044555556*********************************************87 PP

>> DUF2336  Uncharacterised protein conserved in bacteria (DUF2336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   7.3   1.6e-06    0.0097      87     197 ..      37     164 ..      29     166 .] 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.6e-06
     DUF2336  87 aLlrRpdLpaavaerLlsrvsealrdrllarfaldaaaaeelvaeareratlslaeadeeeakrlva..hlrrngrl....................te 163
                 + ++R+ L  a++++++++ +++l + l a+ ++ ++   +++++a  r ++s +++++e+++++++                                
  CTQ28108.1  37 PFASRHALLQAARKAMANWGEDELNAALSAHPRIGEKPTGSQAHAALSRQEQSSVDSENERLAQALRegN-----ARyearfgrvflirakgrsgeeML 130
                 6789*****************************************************4444433333242.....222334455666666666666688 PP

     DUF2336 164 alllralkagdlaffaaaLaelsglpaervrril 197
                 ++l r l++   +++a aLa+l ++ + r + ++
  CTQ28108.1 131 QALTRRLQHTADEEVAEALAQLREITMLRLEGVI 164
                 88999999999999******99999888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1090  (0.0607954); expected 358.6 (0.02)
Passed bias filter:                      730  (0.0407162); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1394.90
//
Query:       CTQ28109.1  [L=108]
Description: 5-hydroxyisourate hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-24   85.7   0.0    3.6e-24   85.6   0.0    1.0  1  Transthyretin    HIUase/Transthyretin family
    8.4e-06   26.0   0.1      1e-05   25.7   0.1    1.2  1  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
    9.1e-05   22.4   0.0    0.00011   22.2   0.0    1.1  1  bMG3             Bacterial alpha-2-macroglobulin MG3 domain
     0.0021   18.2   0.5     0.0031   17.7   0.5    1.2  1  Big_3_5          Bacterial Ig-like domain (group 3)
  ------ inclusion threshold ------
      0.049   13.6   0.0      0.064   13.3   0.0    1.2  1  CarbopepD_reg_2  CarboxypepD_reg-like domain
       0.06   13.4   0.1      0.073   13.1   0.1    1.2  1  Big_1            Bacterial Ig-like domain (group 1)
      0.078   13.3   0.0       0.12   12.7   0.0    1.2  1  SpaA             Prealbumin-like fold domain
       0.13   12.5   0.0       0.16   12.2   0.0    1.1  1  SdrD_B           SdrD B-like domain
       0.15   12.0   0.0       0.19   11.7   0.0    1.2  1  phage_tail_N     Prophage tail fibre N-terminal
       0.18   11.9   0.0       0.34   11.0   0.0    1.4  2  DUF3244          Domain of unknown function (DUF3244)


Domain annotation for each model (and alignments):
>> Transthyretin  HIUase/Transthyretin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0     2e-27   3.6e-24       1     110 []       4     107 ..       4     107 .. 0.94

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 2e-27
                    EEEEEEETTTTEE-TS-EEEEEEECTTSSEEEEEEEEE--TTSCESSSSEEGCGB-SEEEEEEEEHHHHHHHTTS..SESCEEEEEEESTT..SEE CS
  Transthyretin   1 itthvLdttaGkpaagvevelekleeseeeaellaesttdadGrvkellaekeeleagtyklrfeteeYfekegtesffpevevvfevkee..ehy 94 
                    ++th+Ld+++G+pa+gv+v+l++        e+la+ +t+a+Gr++++ a  + l ag+y l+ et+++f+++g+es f   ++ f + e+  +h+
     CTQ28109.1   4 LSTHILDISTGTPAEGVTVSLSRE------GETLANLVTNAQGRIATFSA--APLPAGRYCLTAETGAWFARAGRESVFTRAQIDFVIGEAaeDHF 91 
                    79*******************983......45799************987..9***********************************94445*** PP

                    EEEEEEETTEEEEE-B CS
  Transthyretin  95 hvPlllspfgYstYrG 110
                    h+P+l++p g+stYrG
     CTQ28109.1  92 HLPFLIAPGGWSTYRG 107
                    ***************9 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1   5.8e-09     1e-05       2      55 ..       4      60 ..       3      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 5.8e-09
  CarboxypepD_reg  2 isGrVtd.asgapiagatVtvtnadtgtvastttdadGa...frlrglppgtysvtvs 55
                     +s ++ d ++g+p +g+tV+++  +++t a+ +t+a+G+   f+ + lp+g+y +t++
       CTQ28109.1  4 LSTHILDiSTGTPAEGVTVSLS-REGETLANLVTNAQGRiatFSAAPLPAGRYCLTAE 60
                     667788978*************.478888*********6555999***********95 PP

>> bMG3  Bacterial alpha-2-macroglobulin MG3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   5.9e-08   0.00011      17      76 ..       6      61 ..       1      81 [. 0.73

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5.9e-08
        bMG3 17 vwvtsLdsgkPvagaeVrlldkkgevlaegtTDaqGv.arfaallargkegaapylvsArk 76
                 ++  +++g P++g++V+l+ ++ge+la+  T+aqG+ a+f+a       +a  y ++A++
  CTQ28109.1  6 THILDISTGTPAEGVTVSLS-REGETLANLVTNAQGRiATFSAAPL----PAGRYCLTAET 61
                5678899***********86.78*************8245655533....46666666664 PP

>> Big_3_5  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.5   1.7e-06    0.0031      12      65 ..       4      59 ..       2      60 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.7e-06
                EEEE--CCCCTT.S--.EEEEEETTEE-SS-EE--TTS.EEEEEEE-SS-EEEEEEE CS
     Big_3_5 12 ltatVtaasggt.ptG.tVtftdggttlgtavllsanG.tAtltvsalaaGthsitA 65
                l+  + + s+gt + G tV++  +g tl++ v++++ G +At++ + l+aG + +tA
  CTQ28109.1  4 LSTHILDISTGTpAEGvTVSLSREGETLANLVTNAQ-GrIATFSAAPLPAGRYCLTA 59
                55666666665515566888999*****99999985.55*****************9 PP

>> CarbopepD_reg_2  CarboxypepD_reg-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.6e-05     0.064       4      49 ..       7      58 ..       4      62 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.6e-05
  CarbopepD_reg_2  4 tVvdketkeplpgatVyvkg...tkkgtvTdenGn...FelknlpagkytLv 49
                     +++d +t++p +g+tV++     t ++ vT+++G+   F+   lpag+y L+
       CTQ28109.1  7 HILDISTGTPAEGVTVSLSRegeTLANLVTNAQGRiatFSAAPLPAGRYCLT 58
                     69999*************65222558999*****644488888888888776 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   4.1e-05     0.073      17      48 ..      13      42 ..       2      59 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.1e-05
       Big_1 17 ngnpvagatVtfsvsggalsassgtTdanGka 48
                 g+p +g+tV++s  g++l  ++ +T+a+G++
  CTQ28109.1 13 TGTPAEGVTVSLSREGETL--ANLVTNAQGRI 42
                79**************999..79*******74 PP

>> SpaA  Prealbumin-like fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.6e-05      0.12       3      61 ..      14      61 ..       8      65 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.6e-05
                CCB-TS-EEEEEETTTSCCCHCHHTT.TTCCEESEEE-BTTSE.EEEE..EEESEEEEEE.EE CS
        SpaA  3 gkpLaGaeFtlykvdtttdgkdaleakktgtevttlttdenGk.atfe..gLplGtYllv.Et 61
                g+p +G++ +l +                g++ ++l+t+++G+ atf+   Lp+G Y+l+ Et
  CTQ28109.1 14 GTPAEGVTVSLSRE---------------GETLANLVTNAQGRiATFSaaPLPAGRYCLTaET 61
                45555555555555...............5889*********8434444489******98555 PP

>> SdrD_B  SdrD B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.7e-05      0.16      23      67 ..      16      62 ..       9      79 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.7e-05
      SdrD_B 23 gisgvtVtLkdakgevvatttTdasGkY.kFt..nltpGeYkVeftap 67
                  +gvtV+L +++ge++a+ +T+a+G+  +F+   l +G+Y ++ ++ 
  CTQ28109.1 16 PAEGVTVSL-SREGETLANLVTNAQGRIaTFSaaPLPAGRYCLTAETG 62
                568******.77888999********8424541157888898877655 PP

>> phage_tail_N  Prophage tail fibre N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.19       3      58 ..       3      64 ..       1      76 [. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
  phage_tail_N  3 vvisGvlkdGtGkPvqnctiqlka.rrtsttvvvntva.....senpdeaGrysldvetGky 58
                   + + +l   tG+P +++t+ l     t +++v n+ +     s  p  aGry+l +etG +
    CTQ28109.1  3 TLSTHILDISTGTPAEGVTVSLSReGETLANLVTNAQGriatfSAAPLPAGRYCLTAETGAW 64
                  5556678889**********996514677788888765222234567789*********975 PP

>> DUF3244  Domain of unknown function (DUF3244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019      0.34      31      86 ..       6      58 ..       1      63 [. 0.87
   2 ?   -2.7   0.0       3.5   6.3e+03      69      88 ..      77      96 ..      70     102 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
                TTEEEEEESS--SEEEEEEEETTT--EEEEEEE-GGGTTEEEEE-TTS-SEEEEEE CS
     DUF3244 31 gnilsiefesplsdvtitikdeetgevvyestivnasgstisidlsgeesgeYkle 86
                  il i+  +p + vt++++ e  ge++  + ++na+g   +++ + +++g+Y l+
  CTQ28109.1  6 THILDISTGTPAEGVTVSLSRE--GETL-ANLVTNAQGRIATFSAAPLPAGRYCLT 58
                6799****************99..7776.56788899****************876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.5
                TEEEEE-TTS-SEEEEEEEE CS
     DUF3244 69 stisidlsgeesgeYklelt 88
                ++i + +   +++ ++l + 
  CTQ28109.1 77 AQIDFVIGEAAEDHFHLPFL 96
                57777787788888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 992.70
//
Query:       CTQ28110.1  [L=95]
Description: DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-12   45.5   0.0    9.1e-12   44.9   0.0    1.3  1  HTH_3           Helix-turn-helix
      3e-08   33.6   0.0    3.8e-08   33.2   0.0    1.2  1  HTH_19          Helix-turn-helix domain
    4.3e-08   33.0   0.1    5.3e-08   32.7   0.1    1.1  1  HTH_37          Helix-turn-helix domain
    6.6e-08   32.8   0.0    7.9e-08   32.5   0.0    1.1  1  HTH_31          Helix-turn-helix domain
      2e-05   24.9   0.0    2.8e-05   24.5   0.0    1.2  1  HTH_26          Cro/C1-type HTH DNA-binding domain
     0.0065   16.4   0.2      0.033   14.1   0.0    1.9  2  MarR            MarR family
  ------ inclusion threshold ------
      0.015   15.1   0.0      0.024   14.5   0.0    1.3  1  HTH_25          Helix-turn-helix domain
      0.071   12.7   0.2       0.27   10.8   0.1    1.8  2  HTH_24          Winged helix-turn-helix DNA-binding
      0.088   13.1   0.1       0.11   12.8   0.1    1.2  1  DUF1400         Alpha/beta hydrolase of unknown function (DUF
      0.099   12.5   0.0       0.15   12.0   0.0    1.4  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   5.1e-15   9.1e-12       1      50 [.      23      72 ..      23      75 .. 0.97

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 5.1e-15
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTS CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgv 50
                lk lR+q+ ++q  LA+++G++++t+s+ En   + +l+tl+k+++ Lgv
  CTQ28110.1 23 LKLLRQQNHWTQDALARRIGIKQATLSNFENHPDKTTLTTLFKILQSLGV 72
                799*********************************************97 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   2.1e-11   3.8e-08       3      55 ..      22      73 ..      20      80 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 2.1e-11
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEng.kkdvpsaelllkiaealgid 55
                 Lk +R ++ +tq++la+r+gi ++ +s++En     +++  +l ki++ lg+ 
  CTQ28110.1 22 YLKLLRQQNHWTQDALARRIGIKQATLSNFENHpD--KTTLTTLFKILQSLGVV 73
                79*****************************9953..4445799*******985 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.1     3e-11   5.3e-08      17      76 ..      17      75 ..      12      79 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 3e-11
                HHHHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHTTEEEE CS
      HTH_37 17 aqlalaiaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltalGqkve 76
                +qla  ++ l+++++++q  +a++ gi+q+ +s+ ++ + ++ +l++L ++l++lG    
  CTQ28110.1 17 VQLANYLKLLRQQNHWTQDALARRIGIKQATLSNFEN-HPDKTTLTTLFKILQSLGVVMT 75
                5899999*****************************8.******************8665 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   4.4e-11   7.9e-08       1      56 [.      18      72 ..      18      82 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 4.4e-11
      HTH_31  1 aLGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgl 56
                +L+ +L+ lR++  ++q+++A+r+g+ ++tls  E+      ++ +l ++++ lg+
  CTQ28110.1 18 QLANYLKLLRQQNHWTQDALARRIGIKQATLSNFENHPD-KTTLTTLFKILQSLGV 72
                6999***********************************.6***********9998 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.6e-08   2.8e-05       3      52 ..      24      72 ..      22      75 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.6e-08
      HTH_26  3 relmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgc 52
                + l ++++ t+  Lar++gi +atls++ +  p+  +l+tL ki + Lg+
  CTQ28110.1 24 KLLRQQNHWTQDALARRIGIKQATLSNFENH-PDKTTLTTLFKILQSLGV 72
                555666667*********************8.8**************997 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.8e-05     0.033       8      36 ..      22      50 ..      17      51 .. 0.93
   2 ?   -0.2   0.0      0.53   9.5e+02      30      45 ..      56      71 ..      54      75 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
                HHHHHHHSTTEEHHHHHHHHTS-HHHHHH CS
        MarR  8 iLrilyeqgplsvseLakklgvskstvtr 36
                 L +l++q+  ++  La+++g++++t+++
  CTQ28110.1 22 YLKLLRQQNHWTQDALARRIGIKQATLSN 50
                6999***********************97 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.53
                -HHHHHHHHHHHHHTT CS
        MarR 30 skstvtrvldrLekkG 45
                +k+t+t++ + L   G
  CTQ28110.1 56 DKTTLTTLFKILQSLG 71
                6778888888777665 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.3e-05     0.024       1      32 [.      22      53 ..      22      59 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHC CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEe 32
                +L+  R++  ++ +++a+++ I++++l  +E+
  CTQ28110.1 22 YLKLLRQQNHWTQDALARRIGIKQATLSNFEN 53
                58889************************998 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00015      0.27       9      35 ..      23      49 ..      23      50 .. 0.92
   2 ?   -0.8   0.0      0.66   1.2e+03       4      12 ..      62      70 ..      59      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      HTH_24  9 LelLqknprisqreLAerlglSpstvn 35
                L+lL+++ + +q  LA+r+g+ ++t++
  CTQ28110.1 23 LKLLRQQNHWTQDALARRIGIKQATLS 49
                8899999**************999975 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.66
      HTH_24  4 tdrkILelL 12
                t +kIL+ L
  CTQ28110.1 62 TLFKILQSL 70
                779999876 PP

>> DUF1400  Alpha/beta hydrolase of unknown function (DUF1400)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   6.2e-05      0.11      33      84 ..      18      67 ..      13      86 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.2e-05
     DUF1400 33 eLatylkllskeqreelreaLqaeiklspvllsqllnspigeklLerlgevi 84
                +La+ylk l ++q    ++aL ++i +++ +ls++ n p  ++ L++l +++
  CTQ28110.1 18 QLANYLK-LLRQQNHWTQDALARRIGIKQATLSNFENHPDKTT-LTTLFKIL 67
                89*****.778888999******************99987554.34444444 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.2e-05      0.15      10      28 ..      33      51 ..      26      68 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.2e-05
  YdaS_antitoxin 10 gqkaLAealgvsqqaVsqW 28
                    +q aLA+++g++q++ s++
      CTQ28110.1 33 TQDALARRIGIKQATLSNF 51
                    699**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 735.68
//
Query:       CTQ28111.1  [L=440]
Description: regulator with hipB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-52  176.6   0.0    6.9e-52  176.2   0.0    1.1  1  HipA_C       HipA-like C-terminal domain
    5.8e-25   87.8   0.0    1.2e-24   86.8   0.0    1.6  1  Couple_hipA  HipA N-terminal domain
     0.0071   15.9   0.0      0.073   12.6   0.0    2.2  2  CotH         CotH kinase protein


Domain annotation for each model (and alignments):
>> HipA_C  HipA-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.2   0.0   1.2e-55   6.9e-52       1     211 [.     149     402 ..     149     403 .. 0.90

  Alignments for each domain:
  == domain 1  score: 176.2 bits;  conditional E-value: 1.2e-55
                 CCSTSSSSEEEEEEC.......ETT---SEEEEE........EC...ETTCHHHHHHHHHHHHHTT--B--EEEEEET.EEEEEEE-SSEEE....... CS
      HipA_C   1 lslgGaqpKllladd.......kgeapsthIlKfs.......dd...lpdlvenEylcmrlakaaGldvaevelveve.ekallveRFDrrk....... 74 
                 +s++Gaq+K++l +        +g++p+thI+K++       +    l+++v+nEylc+ la+++Gl v+e+e++     +al+v+RFDrr+       
  CTQ28111.1 149 ISVAGAQEKTALLRMgeqwcipQGATPTTHIIKLPigeikqpNAtldLRESVDNEYLCLALARELGLAVPEAEIIATPrIRALAVTRFDRRWaqegrvl 247
                 69**********777******999**********66888665115669999************************9999789*********77889999 PP

                 EE--EEEHHHHCT--GGGCSCC..-.-HHHHHHHHCCCTTHH..HHHHHHHHHHHHHHHCTBTT--GGGSEEEE.CCCEEEE--B-S--BSGCCTTT.. CS
      HipA_C  75 erlhqedacqllgldpeekYek..g.syeelakllrqlsataseedleelfrrmvfniligNtDdHlKNfsllr.gggrwrLaPaYDlvstaayedee. 168
                  rl+qed+cq++gl+++ kYe+  g +++ ++ +l  +s++   +d+ ++++ mvf++l+g+tD+H+KNfs++  +gg++rL+P+YD++s+ +  + + 
  CTQ28111.1 248 LRLPQEDLCQAFGLPSAMKYESdgGpGIAAIMTFLLGSSEA--LKDRYDFMKFMVFQWLTGATDGHAKNFSIYLlPGGSYRLTPFYDIISAFPVLGGTg 344
                 9*********************96589*****999999654..5***************************77778899************99955446 PP

                 .......ECCEECCSSSEEEE........HHHHHHHCT--HHHHHHHHHHHHHHHHHH CS
      HipA_C 169 .......lalsiggekgrear........faelaeelglkekaaeeiieevveaavaa 211
                        l+++++ +kgr+ +        f ++a++++ +++++ +i++e++ ++++a
  CTQ28111.1 345 lhlrdlkLSMGLNATKGRKTEinaiyprhFLATAKAVNFPREQMLAILQEFAGHVPQA 402
                 9999999899999988888889*******9999******************9999876 PP

>> Couple_hipA  HipA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0     2e-28   1.2e-24       3      98 ..       6     103 ..       4     104 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 2e-28
                  EEETTEEEEEEEEETTTEEEEEE-HHHHH.TCS--SCTTC-TTSTEB-CHHHHHHHHTTSBSSH.HHHHHHHHHTSSTTSHHHHHHHHTTCESTTEEE CS
  Couple_hipA   3 VflngervGalardeegvarFeydpafle.akgpelSlslplsaepytskglpgffanlLPege.lrellarrrgisskdelelLaaiGadlmGalef 98 
                   ++n+ rvG+l+r+++g  +F+yd+++l+ +++++lSlslpl+ + +t++ + ++f+nlLP+ + +r+++ rr +++sk++++lLa +G+d +Ga+++
   CTQ28111.1   6 TWMNNVRVGTLTRQANGAHSFRYDEEWLRsPRARPLSLSLPLQYGNITADAVYHYFDNLLPDSPqVRDRIVRRYQARSKQPFDLLAEVGRDSVGAVTL 103
                  69**************************************************************9******************************986 PP

>> CotH  CotH kinase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.06   3.6e+02     236     268 ..      54      87 ..      28      91 .. 0.75
   2 !   12.6   0.0   1.2e-05     0.073     169     211 ..     291     333 ..     287     380 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.06
        CotH 236 npeenvLfrrlldn.pefrerlkarleelldgvl 268
                 + +   +f++ll + p++r+r+ +r+++  ++++
  CTQ28111.1  54 ADAVYHYFDNLLPDsPQVRDRIVRRYQARSKQPF 87 
                 344445667777555************9888887 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.2e-05
        CotH 169 DvesfldylivnilisntDsysnnyylyskdkngkwrfip.WDl 211
                 D  +f+++++++ l+++tD++ +n+ +y    +g +r  p +D+
  CTQ28111.1 291 DRYDFMKFMVFQWLTGATDGHAKNFSIY-LLPGGSYRLTPfYDI 333
                 56689***********************.*********999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3111.31
//
Query:       CTQ28112.1  [L=430]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     4e-116  387.5   1.8     5e-116  387.1   1.8    1.1  1  GHL10           Glycosyl hydrolase-like 10
    8.3e-05   21.7   0.0    0.00013   21.0   0.0    1.3  1  Melibiase       Melibiase
     0.0032   17.5   0.0     0.0075   16.3   0.0    1.6  1  DUF4434         Domain of unknown function (DUF4434)
  ------ inclusion threshold ------
      0.057   12.1   0.0      0.086   11.5   0.0    1.3  1  Glyco_hydro_66  Glycosyl hydrolase family 66


Domain annotation for each model (and alignments):
>> GHL10  Glycosyl hydrolase-like 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.1   1.8  1.1e-119    5e-116       2     310 ..      44     377 ..      43     378 .. 0.98

  Alignments for each domain:
  == domain 1  score: 387.1 bits;  conditional E-value: 1.1e-119
       GHL10   2 lRgvWlanvdsvdll.............dkvqkkeaikkLddlq...lntvyvqvkndgtalypsavakwselktgkkgedpGrDvLaevideahkrnl 84 
                 +RgvWl++v+++d++               +qk + i+kLd+lq   +ntv++qvk+dgtal+ s++++ws+++tgk+ge pG+D+L++++deahkr++
  CTQ28112.1  44 VRGVWLTTVSRLDWPpvgsiiastpesrITQQKLALIAKLDNLQrlgINTVFFQVKPDGTALWRSDILPWSDMLTGKIGEYPGYDPLQFMLDEAHKRGM 142
                 8*************************988889999**************************************************************** PP

       GHL10  85 kvlaWF...evglnak.....elselvkahPasltvqkrdevktsesaagerlwlnPliPevqdfitklvvevvkrYdvDgvqlDDyfylpesfGydli 175
                 kv+aWF   +v++n+k     el++++ + Pas+ v +r++++t      +r++l+P+iPe++d+it++v+evv+ Y++Dgvq+DDyfy +e++ + l+
  CTQ28112.1 143 KVHAWFnpyRVSVNTKpstiaELNNTLTQVPASVFVLHRNWIRTA----SDRFVLDPGIPEARDWITSIVAEVVQNYPIDGVQFDDYFY-TETASSPLN 236
                 ***************9999*9***********************9....9***************************************.9******** PP

       GHL10 176 dvalYrqetkkealsnkeddlwidWRrdkisqlvkklnatikavkPnvkisvsPagvw.n.............laydeflaDtrrWiekgvideivlqv 260
                 d++++r+++  + +++k d     WRr +++ql++++++tik   Pnv+++vsPagvw n             +ayde++aDtr+W+++g++d+i++q+
  CTQ28112.1 237 DNETFRRYG--QGYASKGD-----WRRHNTQQLIAQVSTTIKKLNPNVEFGVSPAGVWrNrshdpagsdtrgaAAYDESYADTRSWVQQGLLDYIAPQI 328
                 *********..6999***9.....**********************************98*************************************** PP

       GHL10 261 YreklaafaaeldvlakreskevkptavglliGlaakkvpeplkidaqwv 310
                 Y++ +a+ aa++dvla++++++vkpt ++l+iG+a +kv+ep+k++++w+
  CTQ28112.1 329 YWP-FARDAARYDVLANWWAEVVKPTHTRLYIGVALYKVGEPSKNEPDWT 377
                 ***.*********************************************6 PP

>> Melibiase  Melibiase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     3e-08   0.00013     105     202 ..     129     235 ..     119     273 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3e-08
   Melibiase 105 gleelakevhekglkfGlWvePemvsad...se...l...yrehPdwvlqvedrsrtesrnqlvLdlsrpdvvdyiievldnllkeaqidyvkWDmnrh 194
                  l+ + +e+h++g+k   W++P  vs++   s+   l     + P  v+  +     ++ +++vLd + p+++d i+ ++++++++ +id v++D    
  CTQ28112.1 129 PLQFMLDEAHKRGMKVHAWFNPYRVSVNtkpSTiaeLnntLTQVPASVFVLHRNWIRTASDRFVLDPGIPEARDWITSIVAEVVQNYPIDGVQFDDYFY 227
                 4788999*****************99883333321121113466777776666666677789********************************97654 PP

   Melibiase 195 lteigssa 202
                  + ++s+ 
  CTQ28112.1 228 TETASSPL 235
                 44444443 PP

>> DUF4434  Domain of unknown function (DUF4434)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.7e-06    0.0075      25      82 ..      82     145 ..      79     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.7e-06
                 HHHHHHHTT--EEEES....-SEETTEESS-.-HHHHTT---.-SB-HHHHHHHHHHHTT-EEE CS
     DUF4434  25 klrelkelgmntlilq....rvsykgkafyp.skllkekfek.kakdlveaiLdaAdklgmkvf 82 
                 kl++l++lg+nt+++q     +++ +  ++p s +l++k+   +  d+++ +Ld+A k gmkv+
  CTQ28112.1  82 KLDNLQRLGINTVFFQvkpdGTALWRSDILPwSDMLTGKIGEyPGYDPLQFMLDEAHKRGMKVH 145
                 7999************555544444455555555655554334999*****************8 PP

>> Glyco_hydro_66  Glycosyl hydrolase family 66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.9e-05     0.086     165     263 ..     127     225 ..      57     250 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.9e-05
                     HHHHHHHHHHHHHTT-EEEEEEESSEEETTSSBTTBSTTSB-E.EETTEEEE.............EEB-TT-HHHHHHHHHHHHHHHHHHT--EE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_66 165 tsavkeyiaaahskgikamaYnliyaalkdeaeadgvkkewal.fkdknateqdkvklpseksdiylmdpsnkeWqkyiieqnkkvvkafdfDGv 258
                      + ++ + ++ah++g+k  a+   y ++ + ++ + + +  ++ ++   ++  ++ +   ++sd +++dp+ +e +++i +  ++vv+++  DGv
      CTQ28112.1 127 YDPLQFMLDEAHKRGMKVHAWFNPYRVSVN-TKPSTIAELNNTlTQVPASVFVLHRNWIRTASDRFVLDPGIPEARDWITSIVAEVVQNYPIDGV 220
                     456667788899999999999999999888.5555555544442666666666677777779********************************* PP

                     EEE-S CS
                     xxxxx RF
  Glyco_hydro_66 259 hiDql 263
                     + D +
      CTQ28112.1 221 QFDDY 225
                     ***87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3382.13
//
Query:       CTQ28113.1  [L=334]
Description: putative fimbrial protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-13   49.4   0.0    8.5e-13   48.8   0.0    1.2  1  Fimbrial  Fimbrial protein
  ------ inclusion threshold ------
      0.092   12.9   0.4         11    6.3   0.0    2.3  2  FimA      Type-1 fimbrial protein, A


Domain annotation for each model (and alignments):
>> Fimbrial  Fimbrial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   9.4e-17   8.5e-13       3     153 ..     193     333 ..     191     334 .] 0.86

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 9.4e-17
                 EEEEE..E-SSSEEEHHHSSEEEEEEEETGGSBST.EBEEEEEEEEEEEE-TT..THSEEEEEEE.E-BSSTTTTEB--BSST.TT-SSEEEEEEETTS CS
    Fimbrial   3 fngtistraatCeitagtpatVdfpkisvqelnng.egsrsapfeiqvqCssggqnaigiqvsss.gsaaaqspnllltssgasalatgVGIrlydsng 99 
                 ++g i   +a C++++ tpa +++p   ++++    +++   pf +q+ C+s     ++i +++  + + ++   ++l +++  + a+g+G++l     
  CTQ28113.1 193 LTGRI--STAGCSVNDATPALIKLPAAMLDHFGGVgKTTGDTPFALQLDCNSA----VTISLRVDgAEPLTARGHGVLRNDATDDRAQGIGVQLL-YHR 284
                 56777..999*******************************************....888888887777788889999988888889*******6.555 PP

                 SB.E-BSSS-EE--EEECSEE.EEEEEEEEEEES..SBEESSEEEEEEEEEEEE CS
    Fimbrial 100 talltlnaavsgspvestalsrssitftAslkklpggtptaGrvnAtAtvvvky 153
                 ++ + ln +   +  +++  +    ++tA+++++   + taG+v+A At ++ y
  CTQ28113.1 285 QP-VVLNHEMTLGSASAGRFT---LPLTARYYQTR-SRITAGQVSAVATYTLHY 333
                 66.788977776666666655...99********5.9*************9988 PP

>> FimA  Type-1 fimbrial protein, A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0012        11      10      33 ..     223     245 ..     214     254 .. 0.82
   2 ?    4.8   0.1    0.0032        29     103     143 .]     294     334 .]     264     334 .] 0.83

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0012
        FimA  10 kdvGetaGltvfdvkltectsald 33 
                   vG+t+G t+f ++l +c sa+ 
  CTQ28113.1 223 GGVGKTTGDTPFALQL-DCNSAVT 245
                 569************9.7999885 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0032
        FimA 103 tiGsdtyg.atlrylaqyiasGassivaGnlksqvgfsvaye 143
                 t+Gs + g  tl   a y+++  s i aG + +   +++ y+
  CTQ28113.1 294 TLGSASAGrFTLPLTARYYQTR-SRITAGQVSAVATYTLHYD 334
                 667655442699999****996.6789***********9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2583.55
//
Query:       CTQ28114.1  [L=833]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.2e-168  560.7  12.2     5e-168  560.4  12.2    1.1  1  Usher     Outer membrane usher protein
    1.9e-39  135.0   0.0    3.6e-39  134.1   0.0    1.5  1  PapC_N    PapC N-terminal domain
    2.5e-20   72.1   0.0      7e-20   70.6   0.0    1.8  1  PapC_C    PapC C-terminal domain
  ------ inclusion threshold ------
       0.18   11.4   0.0       0.34   10.5   0.0    1.3  1  DUF884    Nucleopolyhedrovirus protein of unknown function (D


Domain annotation for each model (and alignments):
>> Usher  Outer membrane usher protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  560.4  12.2  1.1e-171    5e-168       1     551 []     191     743 ..     191     743 .. 0.97

  Alignments for each domain:
  == domain 1  score: 560.4 bits;  conditional E-value: 1.1e-171
                 EEEEEEEEEETTEEEEEEE..EEEEEE----EEEEEEEEEEEEETTTTEEEEEEEEE--SSSS---EEEEEEEEE-GGGS-CCCCCEEEEEEEEESSSE CS
       Usher   1 ylnlqsGlNlgaWrLrsdsqlswsksegnenkwkssrtylqraipqlkskLtlGesytssdiFdsvsfrGvsLasddnmlPdslrgyaPevrGiArtnA 99 
                 yl l+sG+N+gaWrLr++   s +++++++ +w++s  +l+r++++++s+LtlG+++ts+d+Fd v+f+G+sLas+d+mlPds++g+aP++rGiArtnA
  CTQ28114.1 191 YLMLKSGVNVGAWRLRASN--SLTANSDDKPQWTTSGAWLERDLTRWQSELTLGDTFTSGDVFDAVQFQGISLASSDAMLPDSQKGFAPTIRGIARTNA 287
                 67899**************..6666666668******************************************************************** PP

                 EEEEECTTEEEEEEEE-SEEEEE-S---TTTTCEEEEEEEETTS-EEEEEEEE---TT---TT-EEEEEEEEEEE-SSTTB---EEEEEEEEEE-GGGE CS
       Usher 100 kVtirqnGyviYqtlVppGpFeiqdlnptsssgdLdVtveEadGsvqeftvpyasvplllreGqvrYklaaGryrsnnsqqekpffiqaevsyGlpngl 198
                 +Vt+rqnGyv Yqt+V pG+F i+dl+pt ssg+L+V v+E+dG+ ++ft+pyasv  ++reG+++Y+l+aGry+s+ + +++p ++q +++ G++++l
  CTQ28114.1 288 QVTVRQNGYVLYQTYVTPGAFVIDDLYPTASSGNLEVAVKESDGEIRRFTQPYASVTSMQREGSLKYNLVAGRYHSD-DASQRPLMMQLSLMRGFAHNL 385
                 ****************************************************************************9.699****************** PP

                 EEEEEEEEESSEEEEEEEEEEEEETTEEEEEEEEEEEEEETTSEEEEEEEEEEEEEE-B-TTSEEEEEEEEEEE-TT---HHHHSBSSEE----EETTS CS
       Usher 199 tlYgGlllaedYqAlalglgknlgelGalSvdvtqsrskldkqskekGqsyrlsYakslnetgtniqlagyrystkgfvtlsdaldarkkekdennltn 297
                 tl+gGl+ a++Y+ l+lg+g+ lge GalS+    +r + +++ +++G  ++l+Y+k ++++gt+++++g+rys + + tls+a ++  + +d+ ++++
  CTQ28114.1 386 TLFGGLQSAAQYHNLSLGAGQGLGEAGALSLQLLNARDRHQQD-QIDGRAWQLQYSKGFDRLGTQLTFTGWRYSHQRYATLSEAFSSPGS-DDDLQDSD 482
                 ************************************9887666.9****************************************99855.677999** PP

                 -EEEEEEEEEEEEESSSEEEEEEEEEEEESSS--EEEEEEEEEEEEETTEEEEEEEEEEE-SSS-SE......EEEEEEEEEEESGGGS-TEEEEEEEE CS
       Usher 298 nkkeklqlnvsqslgdygslylsgsrqtYwktsqknknlqlsyntnigrvsvslslsasksenenee......ddllslnlSiPlgrllsranasyslt 390
                 nkk +lq++ sqsl    +lyls+ +  Yw    +++  +++ ++++ ++ +sls+s s+s + +ee      d+++ l+lS+Pl++ll+ ++a y lt
  CTQ28114.1 483 NKKATLQITASQSLPYDITLYLSLDQDSYWSGGATQRTANMGISSQVHGIAWSLSYSDSRSSHGDEEddephsDKVVTLSLSVPLSHLLPGSYAGYTLT 581
                 **************888******************************************9987666556678899************************ PP

                 EESSSTEEEEEEEEEEES.STTEEEEEEEEEEESTSS-EEEEEEEETSSEEEEEEEEEESSEEEEEEEEEEEEEEETTEEEEES---SSEEEEE-TT-T CS
       Usher 391 rnnsgktssetgvsgtll.ddnlsYsvnaglssdgkeslsanlsyqasygevslsysysrdysqlnlslsGgvvahakGvtlsqelgdtrvlikadgva 488
                 +++++  s+ + ++gtll ++ lsY v+++++ ++  s+s+++ y++  g+++l+ys++++   ln++ sGg+++h++Gv++++e+++++vli+a g+ 
  CTQ28114.1 582 SSRHSVGSQMVSLNGTLLdNHALSYAVSQTRDRQNGSSGSLTAGYSSGRGDLNLGYSHDSQAARLNYGASGGILIHRHGVVFTPEMNGAVVLIDAGGAG 680
                 ******************8899***************************************************************************** PP

                 S-BBTTSTT-B--TTSEEEES---TTS-EEEEB-GGGS-TTEEES-SEEEE-B-TT-EEEEE- CS
       Usher 489 gvrvenqtgvktdrrGyavvpyltpYrenrveldtnklpedvelentvaqvvpteGAvvkaeF 551
                 gv++ nq+ ++t+  Gyav+p +t Y++n+v+ld ++lpe+v+l+n++++ vpt+ Avv a+F
  CTQ28114.1 681 GVTLANQKTIATNGDGYAVLPFATAYHRNDVSLDSHSLPENVDLANSTVTLVPTKDAVVLARF 743
                 *************************************************************99 PP

>> PapC_N  PapC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   0.0     8e-43   3.6e-39       1     145 [.      30     175 ..      30     176 .. 0.96

  Alignments for each domain:
  == domain 1  score: 134.1 bits;  conditional E-value: 8e-43
                 EXXCCCCTTX.TTHHHHHHHHHTT-SS-SEEEEEEEEETTEEEEEE.EEEEEECCTCCCEEEE-BHHHHHHTTB-GGGSCCGHHTSTTSC--HHHHSTT CS
      PapC_N   1 eFnpdfLegs.sasnvdlsrFskgnavlpGeYrvdvyvNgkeigrq.evefkaekkkkklepcltrelleqlgvkleklpelakaqeeeCvdlsalipg 97 
                 +Fn+d+Le++ +   vdl+rF+++  ++pG Y+v+  vNg  ++ + +v+f+++ + ++l pcl++e+l q+gv+ + l+++  a++++C +l+al+pg
  CTQ28114.1  30 TFNMDLLEKNdHLPAVDLQRFNQQAGQPPGAYPVSWQVNGVTLDARkTVTFRQN-DRGQLMPCLKPEDLLQAGVNPAVLSQAPGATSRSCPELNALLPG 127
                 5*******998999*****************************77669***998.********************99999999999999********** PP

                 -EEEEETTTTEEEEE--GGGBSTTSTTSSXCCGSBSXTTEEEEEEEEE CS
      PapC_N  98 asvkfdlakqrLdlsiPqaalknsargyvspeewdeGinaallnYnan 145
                 ++v+fd+a+qrL ++iPqa+++++ar+ v++++wdeGi+a+  nY ++
  CTQ28114.1 128 STVNFDFAHQRLVMTIPQALMTHRARDNVPSALWDEGISAFQSNYRYS 175
                 *********************************************998 PP

>> PapC_C  PapC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   1.6e-23     7e-20       1      65 [.     752     813 ..     752     814 .. 0.94

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 1.6e-23
                 EEEEEETTTEE--TT-EEEETTSSS-EEB-CCCEEEEECE-SEEEEEEES-SSTTSEEEEEEE-- CS
      PapC_C   1 lltltradGkplPfGAevtdeengkvgiVgqgGqvylrglpdqgtLtvkwgegssqqCrasytlp 65 
                 l+tl+   G+plPfG+ev+ +++++  iV+ +Gqvyl gl+++gtL+++wg g++q+C+a+y+l+
  CTQ28114.1 752 LFTLQS-RGQPLPFGSEVRAKDTNS--IVASEGQVYLAGLAPKGTLYAQWGPGPQQRCSARYDLT 813
                 789998.**************6665..************************************96 PP

>> DUF884  Nucleopolyhedrovirus protein of unknown function (DUF884)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.7e-05      0.34      54     104 ..     714     764 ..     704     777 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.7e-05
      DUF884  54 lenskPinivvrsitvelngtrqayvismirarrllrdllaynkytaPlgi 104
                   +s P n+ +  +tv l +t++a v++ + ++  ++ l++ +    Pl +
  CTQ28114.1 714 DSHSLPENVDLANSTVTLVPTKDAVVLARFHTHVGYKALFTLQSRGQPLPF 764
                 56799*************************************999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5645.93
//
Query:       CTQ28115.1  [L=231]
Description: Chaperone protein LpfB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-41  138.7   0.0    2.5e-40  137.2   0.0    1.6  2  PapD_N    Pili and flagellar-assembly chaperone, PapD N-termi
    8.5e-14   51.7   0.0    3.1e-13   49.9   0.0    1.9  2  PapD_C    Pili assembly chaperone PapD, C-terminal domain
  ------ inclusion threshold ------
      0.051   13.9   0.1       0.11   12.9   0.1    1.5  1  Tad       Putative Flp pilus-assembly TadE/G-like
       0.14   12.4   0.1       0.35   11.1   0.0    1.7  2  ASH       Abnormal spindle-like microcephaly-assoc'd, ASPM-SP


Domain annotation for each model (and alignments):
>> PapD_N  Pili and flagellar-assembly chaperone, PapD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   0.0   5.6e-44   2.5e-40       1     124 [.      23     140 ..      23     141 .. 0.95
   2 ?   -1.4   0.0      0.45     2e+03      68      95 ..     149     176 ..     145     190 .. 0.63

  Alignments for each domain:
  == domain 1  score: 137.2 bits;  conditional E-value: 5.6e-44
                 EEEESSSEEEEETTSSEEEEEEEE-SS.S-EEEEEEEECTTSSSTCCSSCS.SEEEESSEEEE-TTEEEEEEEEE.SS---SSS-EEEEEEEEEE---- CS
      PapD_N   1 gvviggtrviynadekeasvtvkNtgk.epylvqswvddgdeeaedekakaspfvvtPPlfrlepgeeqvlRivtagkklpkdrEslfwlnvkeiPpkk 98 
                 gv i+gtrviyn++++ea +tvkNt+  +p+l+qsw dd       +++k+ pf+vtPPlfrl++g+++ lR+++++++lp+drEslf ln+k iP+++
  CTQ28115.1  23 GVAIAGTRVIYNEQSHEADITVKNTNPhDPVLIQSWADD-----LADNNKS-PFIVTPPLFRLDAGDSNDLRVLLTSAQLPNDRESLFTLNIKVIPANT 115
                 689************************9***********.....7778888.*********************777*********************88 PP

                 -.TCEEEEEEEEEEEEEEEEEEETTS CS
      PapD_N  99 kkkekknklqlalrsriklfyrPagl 124
                    + +n lq+a+++++kl+yrPagl
  CTQ28115.1 116 A-PAGENILQFAIKNQLKLIYRPAGL 140
                 5.677*******************98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.45
                 EEEEE.EE.SS---SSS-EEEEEEEEEE- CS
      PapD_N  68 qvlRi.vtagkklpkdrEslfwlnvkeiP 95 
                 q lR  v+ g++l++++ s ++++++++ 
  CTQ28115.1 149 QHLRWrVS-GNHLQAENASPYYVTITTLS 176
                 56666444.77777777777777776654 PP

>> PapD_C  Pili assembly chaperone PapD, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.81   3.6e+03       2      10 ..      65      73 ..      65      84 .. 0.82
   2 !   49.9   0.0     7e-17   3.1e-13       2      62 ..     163     222 ..     162     223 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.81
                EE-SSS-EE CS
      PapD_C  2 kNptPYyvt 10
                +N +P+ vt
  CTQ28115.1 65 NNKSPFIVT 73
                79****998 PP

  == domain 2  score: 49.9 bits;  conditional E-value: 7e-17
                 EE-SSS-EEEEEEEEEETTEEEEEEEEEE-TTEEEEETT--S--TT-EEEEEEE-TTS-EE CS
      PapD_C   2 kNptPYyvtfsslevkgggkslaleagmvaPfssatfakkaapaagatvsftvINDyGgiv 62 
                 +N +PYyvt+++l+  g++++++le +++aP+s +++ +++  a + +vs+++ +D+G+++
  CTQ28115.1 163 ENASPYYVTITTLSCAGQNQKTPLERSVIAPHSREEY-SLPGEACAREVSWRILDDFGAVQ 222
                 6************************************.********************987 PP

>> Tad  Putative Flp pilus-assembly TadE/G-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   2.4e-05      0.11       3      29 ..       6      33 ..       5      36 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.4e-05
         Tad  3 aavlfalallplll.lvglavDvgravl 29
                aa ++ l+++p+l+ ++g+a++++r+++
  CTQ28115.1  6 AAFILSLLFCPFLAsAAGVAIAGTRVIY 33
                5679*********************986 PP

>> ASH  Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.8e-05      0.35      25      86 ..      38     103 ..      30     111 .. 0.76
   2 ?   -2.9   0.0       1.8   7.9e+03      29      51 ..     160     180 ..     158     196 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.8e-05
                 EEEE-EEESS-SS-.-EE...EEEEEE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         ASH  25 aerlLtveNpseep.aev...kvskvpaaekgfsveetelevqpgesvtltvtwtPteegavrevL 86 
                 +e+ +tv+N+++++ + +   + + + + +  f v++  +++++g+s  l+v +t ++  + re L
  CTQ28115.1  38 HEADITVKNTNPHDpVLIqswADDLADNNKSPFIVTPPLFRLDAGDSNDLRVLLTSAQLPNDRESL 103
                 56666666666666444411134567778889**********************999988888876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.8
                 -EEESS-SS--EEEEEEEE--XX CS
         ASH  29 LtveNpseepaevkvskvpaaek 51 
                 L+ eN s++ +++++  ++   +
  CTQ28115.1 160 LQAENASPYYVTITTLSCA--GQ 180
                 5566777666333332222..23 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1894.78
//
Query:       CTQ28116.1  [L=187]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-19   68.7   6.4    8.7e-19   68.3   6.4    1.2  1  Fimbrial  Fimbrial protein
     0.0011   19.1   3.0     0.0057   16.8   2.4    2.5  1  FimA      Type-1 fimbrial protein, A


Domain annotation for each model (and alignments):
>> Fimbrial  Fimbrial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   6.4   9.7e-23   8.7e-19       2     153 ..      31     186 ..      30     187 .] 0.82

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 9.7e-23
                 EEEEEE..E-SSSEEEHHHSS.EEEEEEEETGGSBST.EBEEEEEEEEEEE.E-TT..THSEEEEEEE..E-BSSTTTTEB--BSST.TT-SSEEEEEE CS
    Fimbrial   2 nfngtistraatCeitagtpa.tVdfpkisvqelnng.egsrsapfeiqvq.Cssggqnaigiqvsss..gsaaaqspnllltssgasalatgVGIrly 95 
                 nf+g+i  ++++C+i ++  + +Vdf+++  ++l++  +++ + pf+i ++ C+    ++i+i +  +  ++a+ +s+  l  s++a + a+gVGI + 
  CTQ28116.1  31 NFTGKI--INESCQIANNGGDvNVDFGNVDMSALKSHeAKTAETPFTINLTgCPLA--QNISISLEGTpdTNANGTSAAVLALSDAA-DTAKGVGIEVF 124
                 899***..*******9999889**********************************..44666664445666666666655555555.568******96 PP

                 ETTSSB.....E-BSSS-EE--EEECSEE.EEEEEEEEEEES..SBEESSEEEEEEEEEEEE CS
    Fimbrial  96 dsngta....lltlnaavsgspvestalsrssitftAslkklpggtptaGrvnAtAtvvvky 153
                  s +++     lt +++++ +  +++++ +  ++f+A lk+ +++ +taG++nAtA++++ y
  CTQ28116.1 125 SSPDGStegtQLTFDKQSKTAVSQADENGDIAFNFIADLKSDSSQDVTAGNINATANIDIVY 186
                 6554443577789998887777777777778899*******99****************988 PP

>> FimA  Type-1 fimbrial protein, A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   2.4   6.4e-07    0.0057       4     143 .]      57     187 .]      54     187 .] 0.67

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.4e-07
        FimA   4 vsrkalkdvGetaGltvfdvkltectsaldGaqvklffesGssvdyvsgnlkai..aadaaGveqvqllkadnvqanldgsaiflGkdkaaqdvqtflv 100
                 v   alk+    +  t+f ++lt+c+ a +   + l   + +  + +s  + a+  aad+a  + ++   + +     +g+ + + k    q+     v
  CTQ28116.1  57 VDMSALKSHEAKTAETPFTINLTGCPLAQNI-SISLEGTPDTNANGTSAAVLALsdAADTAKGVGIEVFSSPDG--STEGTQLTFDK----QSKT--AV 146
                 66789*********************98664.455555566667777777776622456444445555544332..24444433333....3333..34 PP

        FimA 101 setiGsdtygatlrylaqyiasGassivaGnlksqvgfsvaye 143
                 s++   ++ + ++ ++a      +  + aGn++++ +  ++ye
  CTQ28116.1 147 SQA-DENG-DIAFNFIADLKSDSSQDVTAGNINATANIDIVYE 187
                 554.3444.5789999999999999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1497.75
//
Query:       CTQ28117.1  [L=95]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.048   13.9   1.1        0.1   12.8   1.1    1.6  1  DIM       DIM protein


Domain annotation for each model (and alignments):
>> DIM  DIM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.1   5.8e-06       0.1       1      27 [.       1      27 [.       1      38 [. 0.71

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.8e-06
         DIM  1 MkcLsLlafllllla.laaanalpGkVi 27
                M  + L a+l+l+la la+  al G+V 
  CTQ28117.1  1 MSPFRL-ALLCLCLApLASSAALSGQVH 27
                778899.*******725555556***94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 832.93
//
Query:       CTQ28118.1  [L=260]
Description: Methionine aminopeptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-49  166.4   0.5    7.4e-49  166.3   0.5    1.0  1  Peptidase_M24  Metallopeptidase family M24


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.3   0.5   4.1e-53   7.4e-49       4     209 .]      16     243 ..      13     243 .. 0.89

  Alignments for each domain:
  == domain 1  score: 166.3 bits;  conditional E-value: 4.1e-53
                    HHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT.....TCEESSSSEEEEGGGGGSTTTBCS.SSB--TTEEEEEEEEEEETTEEEEEE CS
  Peptidase_M24   4 rkaariasaaleavleaikpgvterelaaeieattlkrhg.....arglafppivasgenaavlhytpn.drvlkegdlvlidagaeydgyasDit 93 
                    r a+++ + +++ + + i pgvt++ + + +e++++ + +     ++++ fp +  +++n+ v+h++p  ++ l+ g++v++d++ e  g ++D++
     CTQ28118.1  16 RHAGQLLASVFDMLDTFIVPGVTTMAINDRVEDFIVNQLHarpasKGQYDFPYVLNTSINDVVCHGIPKaTEHLRSGMIVNVDITLEKAGMIADSS 111
                    99************999*****************7766557888777889******************74666*********************** PP

                    EEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEESSSSSEEEEEESS..STTCSSB--TTBEEEEE CS
  Peptidase_M24  94 rTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesaglakffphglGHgvGlevhdegpsvsr..esndgrkleeGmvftiE 187
                     ++l+G+ +p +r+l++++ ea+ ++i+ vkpG+tl++i++a+++++e++g+ +++++++GHgvG+e+h+e p+v +  ++++g +l+eGmvftiE
     CTQ28118.1 112 KMYLIGDVSPLARRLVKTTYEAMWKGIEVVKPGATLGDIGHAIQRWVEEHGY-SVVREYCGHGVGQEMHEE-PQVLHygRPGEGAVLQEGMVFTIE 205
                    ****************************************************.999**************9.**987677779************* PP

                    EEEE.EET........TT.......E.EEEEBEEEEEES CS
  Peptidase_M24 188 pgiy.fap........ge.......g.gvriedtvlvte 209
                    p++    +        g+       + ++++e+tv vt+
     CTQ28118.1 206 PMVNqG-DsriktkkdGWtvvtrdkKlSAQWEHTVAVTA 243
                    *77730.23333334444777777777**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1947.55
//
Query:       CTQ28119.1  [L=72]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-25   86.9   0.1    7.8e-25   86.8   0.1    1.0  1  ParD_like  ParD-like antitoxin of type II bacterial toxin-ant


Domain annotation for each model (and alignments):
>> ParD_like  ParD-like antitoxin of type II bacterial toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.1   4.3e-29   7.8e-25       1      61 [.       1      61 [.       1      68 [. 0.94

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 4.3e-29
   ParD_like  1 mgivkiddeLhdsarresaaqsRSinaQiehWariGrlvesspslsyreieelllkaaeee 61
                mgivki+d Lhd++r++s+a+sRS+naQ+e+W+r+G+++e+ p+l++++i+ l+lk+  ++
  CTQ28119.1  1 MGIVKISDLLHDDIRDASKAMSRSVNAQAEYWIRLGMMSELYPELNHQQIKLLMLKSGSDR 61
                89**************************************************999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 551.36
//
Query:       CTQ28120.1  [L=82]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 642.91
//
Query:       CTQ28121.1  [L=551]
Description: Sensory box-containing diguanylate cyclase/cyclic diguanylate phosphodiesterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-71  240.0   0.0    3.7e-71  239.4   0.0    1.3  1  EAL       EAL domain
      2e-36  125.2   0.0    3.5e-36  124.4   0.0    1.4  1  GGDEF     Diguanylate cyclase, GGDEF domain
    2.6e-12   46.9   0.0    6.6e-12   45.6   0.0    1.7  1  PAS_9     PAS domain
    9.8e-08   32.0   0.0    2.5e-07   30.7   0.0    1.7  1  PAS       PAS fold
    0.00087   19.5   0.0     0.0021   18.3   0.0    1.7  1  PAS_4     PAS fold
     0.0012   19.1   0.2      0.004   17.4   0.1    2.1  2  PAS_3     PAS fold
     0.0099   16.1   0.0      0.019   15.2   0.0    1.4  1  GGDEF_2   GGDEF-like domain
  ------ inclusion threshold ------
      0.091   12.0   0.0       0.67    9.2   0.0    2.0  2  GCH_III   GTP cyclohydrolase III


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.4   0.0   1.6e-74   3.7e-71       2     238 .]     310     541 ..     309     541 .. 0.95

  Alignments for each domain:
  == domain 1  score: 239.4 bits;  conditional E-value: 1.6e-74
                 HHHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--CHHCC-C CS
         EAL   2 ealrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlspaslade 100
                 +++r+ ++++e++l+yQ + ++k+++++g+eallrwqhp++g+i+p+ f+p+ae++g++  l  wvleq++++  +       ++k+s+n+sp +l+++
  CTQ28121.1 310 ADIRRGIHAGEFSLHYQAIRNIKDRSITGYEALLRWQHPQLGTIPPDVFIPIAEESGAIVPLGYWVLEQVCNESLEN----GLNRKVSVNISPVQLRHR 404
                 5799********************************************************************55442....66899************* PP

                 CHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHH CS
         EAL 101 efleelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalia 199
                 +f+e++re+l ++  + s L +e+te++++ +++ + ++vl++L+++Gi+ialddfgtgyssls l+++++d+iKldrs+++d+e++++ +++v+a+i+
  CTQ28121.1 405 SFIEKVREILMRTAYPVSLLEFEVTETAFVINKQLA-FSVLHHLQKMGISIALDDFGTGYSSLSMLRDFHFDVIKLDRSFMTDVESNPQVRSFVRAIIS 502
                 **********888899999********997666666.6************************************************************* PP

                 HHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 200 lakelgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 l ++++ +++aegVet  ql+ l+e gcd +QG+l+++p
  CTQ28121.1 503 LGNSINTPLIAEGVETAGQLQILEEEGCDEMQGFLFGEP 541
                 *************************************98 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.0   1.6e-39   3.5e-36       1     157 [.     136     286 ..     136     290 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 1.6e-39
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a +D+lTgLpNR  + e++e+++       +++a+  +dld+Fk+ind  Gh +GD++Lq+va +  ++l+k+++vaR+ggdeF+ + p  ++    e+
  CTQ28121.1 136 ARYDALTGLPNRVEFFERVEKLITGND--ARRFAIFTIDLDKFKEINDLQGHLIGDQLLQRVAGAVLKTLQKEEMVARFGGDEFVAVKPFSDE---GEV 229
                 679*********************993..579*******************************************************888885...689 PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHC CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKka 157
                   ++ rl   ++ + + +++e+ +++siGi+++ pe+g+d++++l+++d a+y+aK++
  CTQ28121.1 230 DAFAARLWHCFSGKQTFAATEVVLSASIGISVY-PEDGTDINTILSNSDLAMYRAKSS 286
                 999999999999999999999************.6*********************75 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   2.9e-15   6.6e-12       3     104 .]      22     124 ..      20     124 .. 0.92

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 2.9e-15
       PAS_9   3 gilidnpdgrilyaNeaalrllGyspeevlgksitdlf....vtdpeanerlraaleqgrkkerevevvlirkngetfwvlltaspvkdddgelvgiiv 97 
                 +i +   dg+++++Ne+a+r  Gy ++e++g+++  ++      +   +++l+ al++g+   +e+e   +rk+g++fw+++ + +++d++++l g++ 
  CTQ28121.1  22 AIYMLSADGTVISWNEGARRAKGYLSDEIIGRYFGLFYseaeQLSGVPAKNLEIALRSGQ---FEGEGWRYRKDGSRFWAHVMIDTIRDEQNTLLGFAK 117
                 6777779**************************999998877777778888888888888...************************************ PP

       PAS_9  98 ilrDite 104
                 i rDi+e
  CTQ28121.1 118 ITRDISE 124
                 *****98 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.1e-10   2.5e-07       3     113 .]      11     122 ..      10     122 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.1e-10
                 HHHHHHHSSS.EEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH.HHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEET CS
         PAS   3 lraileslpd.pifvvDedgrilyvNaaaeellGlsreevlgkslldliheedda.elaelleqlleqgeesrageisfklrdgrpihlevraspvrda 99 
                 +r+++es  d +i ++ +dg ++ +N+ a++  G+  +e++g+ +  +++e ++   ++++ ++ ++ + +++++  + ++ dg+ ++++v   ++rd+
  CTQ28121.1  11 YRHFIESVKDyAIYMLSADGTVISWNEGARRAKGYLSDEIIGRYFGLFYSEAEQLsGVPAKNLEIALRSGQFEGEGWRYRK-DGSRFWAHVMIDTIRDE 108
                 788888855438999*************************************99988888877777777777887888888.***************** PP

                 TEEEEEEEEEEEES CS
         PAS 100 ggeilgflgvlrdi 113
                 + ++lgf  + rdi
  CTQ28121.1 109 QNTLLGFAKITRDI 122
                 **999998777776 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   9.3e-07    0.0021       7     109 ..      22     126 ..      15     127 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 9.3e-07
       PAS_4   7 alavldpdgrvlyaNaaaaelfgappeellGktlaellpee..daarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGevigvlvisr 103
                 a+++l++dg+v+ +N+ a++  g+  +e++G+ +  +++e   + +  + +l+ +l+++++  +   ++ +g++ +  + +  +rde+ + +g+  i+r
  CTQ28121.1  22 AIYMLSADGTVISWNEGARRAKGYLSDEIIGRYFGLFYSEAeqLSGVPAKNLEIALRSGQFEGEGWRYRKDGSRFWAHVMIDTIRDEQNTLLGFAKITR 120
                 46667******************************77777777888888999999999988877777777777777777779999************** PP

       PAS_4 104 DiTerr 109
                 Di+e++
  CTQ28121.1 121 DISEQK 126
                 ***997 PP

>> PAS_3  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.8e-06     0.004       2      88 ..      33     118 ..      32     119 .. 0.82
   2 ?   -3.2   0.0       4.7   1.1e+04      27      60 ..     313     347 ..     306     352 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.8e-06
       PAS_3   2 iyvserveeilGyspeellgkveswldlvhpeDrerv.realqealkkgepyegeyRirrkdGeyrwveararvirdengkpvrvigv 88 
                 i+++e  ++  Gy ++e++g+  + l +   e ++ v  ++l+ al++g+ +ege  + rkdG+ +w +  +  irde++  + + ++
  CTQ28121.1  33 ISWNEGARRAKGYLSDEIIGR-YFGLFYSEAEQLSGVpAKNLEIALRSGQ-FEGEGWRYRKDGSRFWAHVMIDTIRDEQNTLLGFAKI 118
                 89*******************.4455555666677772566666776666.*****9**********************999888765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.7
       PAS_3  27 ldlvhpeDrervrealqealkkge.pyegeyRirr 60 
                 +  +h  + +  ++a+ ++ ++    ye   R+++
  CTQ28121.1 313 RRGIHAGEFSLHYQAIRNIKDRSItGYEALLRWQH 347
                 55577777777777777665554455555566666 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.5e-06     0.019      33      94 ..     187     260 ..     148     271 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.5e-06
     GGDEF_2  33 daerllraleeal.ral.gpdalvavrgdrlvlllpaedeedaeallerlarrlgg..........lsvriGiG 94 
                  +++ll++++ a+ ++l + ++++   gd++v++ p++de + +a+++rl+  ++g          ls++iGi+
  CTQ28121.1 187 IGDQLLQRVAGAVlKTLqKEEMVARFGGDEFVAVKPFSDEGEVDAFAARLWHCFSGkqtfaatevvLSASIGIS 260
                 44568888888875666567777777899**********************99999888888887777777777 PP

>> GCH_III  GTP cyclohydrolase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.089     2e+02      29      75 ..     116     160 ..     104     165 .. 0.84
   2 ?    9.2   0.0    0.0003      0.67     128     200 ..     166     236 ..     145     284 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.089
                 HHHHHHHHHHHHTTT-EEE-TTSSEEEEE-TT--HHHHHHHHHHHHH CS
     GCH_III  29 arlyadlqkelaardGlvfatRfDnllaitngidleehkRiqesirn 75 
                 a++  d+ ++ a  d +++++R+D l ++ n ++   ++R+ + i++
  CTQ28121.1 116 AKITRDISEQKAINDRIAWMARYDALTGLPNRVE--FFERVEKLITG 160
                 5667788999999999*************99765..68899888875 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0003
                 EEEEEEEETTHHHHTTTTS-HHHHHHHHHHHHHHHHHHHHTTT---EEEETTEEEEE-TT--HHHHHHHHHHH CS
     GCH_III 128 vqiahiDinnitgtltdivsavrtylevnkvkaklakklekegallqfiGGDnilavcneleeedvldiinev 200
                  +i  iD+ +    + d  + +     +++v  ++ k+l+ke+ +  f GGD ++av +  +e++v+   +++
  CTQ28121.1 166 FAIFTIDLDKFK-EINDLQGHLIGDQLLQRVAGAVLKTLQKEEMVARF-GGDEFVAVKPFSDEGEVDAFAARL 236
                 566677777776.6788888888888899***************9998.***************999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4149.39
//
Query:       CTQ28122.1  [L=311]
Description: putative oxidoreductase, Fe-S subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-12   46.9   0.1    4.5e-12   46.2   0.1    1.4  1  Esterase       Putative esterase
     0.0023   18.6   0.6     0.0023   18.6   0.6    2.1  2  Abhydrolase_6  Alpha/beta hydrolase family
     0.0088   15.5   0.0       0.03   13.8   0.0    1.7  2  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.1   7.5e-16   4.5e-12       5     250 ..      64     301 ..      60     302 .. 0.79

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 7.5e-16
                 TEEEEEEEEE.CC.GGTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTT...TSBTTSB..........B.TTEEETTCCC CS
    Esterase   5 greikvqvyLPedyspgrkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessf...ysdwdlg..........arfyenategpg 90 
                 +r ++v+   P++ +p+ +ypv+y+ldG +   +++  +++l++l +     +++iv + +  + +f      wd            ++  ++  + +g
  CTQ28122.1  64 ERHYRVWTAVPDKAPPAAGYPVLYMLDG-NAVMDKLD-DAFLQQLFAG---SPPVIVAIGYQTALPFdtaARAWDYTpplkthepraGKPALPPRKTGG 157
                 78999***********************.77777775.7889888888...5999999999999999766667776566877766654556788999** PP

                 CCCHCHHHHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CCHCHHHCTTCCHHHCC-CCCCHCHHCHTTSEEEEEEE CS
    Esterase  91 aeayetfltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgqeekeawqendpvllakelsaslkalriyld 189
                 ++ +++ lt++++p  +an++++p +ra++G+S GGl+ L +  k    Fg   s Sp         gq+ ++  q+ ++++ +     + ++++ yl 
  CTQ28122.1 158 NDVFRQLLTETMVPQTEANLKIDPHQRAIWGHSYGGLFVLDAWRK-ASPFGIYYSASPS-------LGQALQSPLQASQSLDAV-----RFRGKSLYLL 243
                 **************************************9976555.5679999999966.......677666666666666666.....6788888888 PP

                 ECTTBCCCHTSCHHHHHHHHHHHCCHHHHCCCCCCTT-SCCCC--SSHHHHHHHHHHCHHH CS
    Esterase 190 vGtseddlgeqlsveilevlarnrelkeqlaargvegedheydGghsweyWraqLiaalad 250
                  G++  +++     + levl++ ++++  la +g++  +  y+G  + + +  +L  al++
  CTQ28122.1 244 EGDGKARGEPSGHEASLEVLRQ-TQQQ--LASKGLTVAFWRYPGLTHGQMFEVSLRSALLH 301
                 8888887776666666665544.3333..68888888888888888888888877777665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.7     0.098   5.9e+02     163     196 ..      77     111 ..      12     151 .. 0.56
   2 !   18.6   0.6   3.9e-07    0.0023      62     125 ..     170     242 ..     128     305 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.098
                    CCHHTT-TTGCEEE...CTT-CHHHHCHHCCCHSTTE CS
  Abhydrolase_6 163 aaawadlpvpllvl...ggeDplvprllerllaqaga 196
                    a++ a++pv++ +l   +  D+l  ++l++l a  + 
     CTQ28122.1  77 APPAAGYPVLY-MLdgnAVMDKLDDAFLQQLFA-GSP 111
                    22333333333.443222444455555555555.333 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 3.9e-07
                    ...........TTSEEEEEETCHHHHHHHHHHCC..EEEEES-..----TTTS----TTHHHHHHTT-C...CCCH CS
  Abhydrolase_6  62 a.........gggpvvlvGHSlGGalalaaaplalvvgvlldppptalpagllaaalelllallallrl...lawl 125
                              ++++  ++GHS+GG+ +l a + a  +g+++++   ++ +g +   + ++ + l++ r+     +l
     CTQ28122.1 170 VpqteanlkiDPHQRAIWGHSYGGLFVLDAWRKASPFGIYYSA---SPSLGQALQSPLQASQSLDAVRFrgkSLYL 242
                    233444666689999**********9999888888899*****...666666444444444444433333333333 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     5e-06      0.03      60      94 ..     178     211 ..     159     217 .. 0.81
   2 ?   -1.5   0.0      0.24   1.5e+03       5      33 ..     265     292 ..     262     299 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5e-06
                   S--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEE CS
  Peptidase_S9  60 yvdserlaitGgSyGGyltgaalnqrpdlFkaava 94 
                    +d+ + ai+G+SyGG+ ++ a   + + F+   +
    CTQ28122.1 178 KIDPHQRAIWGHSYGGLFVLDAWR-KASPFGIYYS 211
                   6899***************99888.6666666555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.24
                   HHHHHHHCCT-EEEEE--TTSSTTHCHHH CS
  Peptidase_S9   5 selqlladrGyvvvvanirGsggyGeafh 33 
                   +++q la++G  v++  + G + +G+ f+
    CTQ28122.1 265 QTQQQLASKGLTVAFWRYPGLT-HGQMFE 292
                   5667777888888888888877.566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2379.17
//
Query:       CTQ28123.1  [L=59]
Description: hypothetical protein CH1034_220099 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 488.77
//
Query:       CTQ28124.1  [L=46]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.3   11.2   5.3      0.074   13.2   2.3    1.6  2  CBP_BcsF  Cellulose biosynthesis protein BcsF


Domain annotation for each model (and alignments):
>> CBP_BcsF  Cellulose biosynthesis protein BcsF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.3     0.078   1.4e+03      22      27 ..       5      10 ..       1      22 [. 0.47
   2 ?   13.2   2.3   4.1e-06     0.074       9      33 ..      20      44 ..      15      46 .] 0.92

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.078
    CBP_BcsF 22 yllarl 27
                +ll+ +
  CTQ28124.1  5 MLLVLI 10
                333322 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.1e-06
    CBP_BcsF  9 iiilcaLiflpLgyllarllrrlsd 33
                +i+++aL+f+ L +l+ +ll++l d
  CTQ28124.1 20 LIVIIALLFIALTPLVKKLLSHLHD 44
                89*******************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1038  (0.057895); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 349.10
//
Query:       CTQ28125.1  [L=79]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       897  (0.0500307); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 615.23
//
Query:       CTQ28126.1  [L=147]
Description: Phosphoenolpyruvate-dependent PTS family enzyme IIA component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-22   80.6   0.6    1.2e-22   80.4   0.6    1.0  1  PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransf


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.6   6.7e-27   1.2e-22       7     143 ..       9     142 ..       4     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 6.7e-27
                 GEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTETCEE----SCCC...BSS-EEEEEEEEEEEE-T-GCC-CEEEEEEEE-S CS
  PTS_EIIA_2   7 lifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgigngvAiPHarlea...vkkpaiavlklkepvdfeasdgkpvklifllalp 102
                 +  +  +a++k e+i+ ++  ++++g+v+++  ++  llere ++st +gng+ +PH    a   ++k++i + +++++v ++     +v +i + ++ 
  CTQ28126.1   9 NLHIGCKASNKAEVIAMIGAEFKAKGYVNQE--CVHFLLEREHQVSTFLGNGITLPHLPKSAtdiILKTGIEIYQFPDGVIWD---RSNVMFIAIGVIA 102
                 455566899********************88..************************9954446799***************9...4456555444444 PP

                 SCHH.HHHHHHHHHHHHCSCCHHHHHHC--SHHHHHHHHCH CS
  PTS_EIIA_2 103 ekdaehlkilaqLaellkdeefvekLrkakseeeilellee 143
                 ++++ h+++l+++a +++de  +++L+ +++++++l++l++
  CTQ28126.1 103 KEKE-HIDVLKEIASIFSDELIANALSLISDKHDFLKILQH 142
                 4444.**********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1109.53
//
Query:       CTQ28127.1  [L=481]
Description: putative metabolite transport protein YncC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.6e-104  348.8  27.9   5.3e-104  348.6  27.9    1.0  1  Sugar_tr  Sugar (and other) transporter
    1.2e-34  119.8  46.6    8.4e-30  103.9  21.2    2.0  2  MFS_1     Major Facilitator Superfamily
    3.7e-09   35.6   3.1    3.7e-09   35.6   3.1    2.1  2  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
        4.5    7.6   7.3        1.3    9.4   0.0    3.0  3  MscL      Large-conductance mechanosensitive channel, MscL


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.6  27.9  1.2e-107  5.3e-104       2     450 ..      19     459 ..      18     461 .. 0.92

  Alignments for each domain:
  == domain 1  score: 348.6 bits;  conditional E-value: 1.2e-107
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                 +lva++ggllfgYdtgvi+++ ++lk   ++ + + +    e     gl++s++lvGa++Gs+f+g+++d+fGR+k ll+ +++f+iga+l+aaa+   
  CTQ28127.1  19 TLVATFGGLLFGYDTGVINGAFSSLK---QYMALTPT---TE-----GLVMSVLLVGAALGSVFGGKFADYFGRRKYLLFLSFVFLIGALLSAAAP--- 103
                 79******************999999...33333333...34.....8************************************************... PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-..TTHHHHHHHCCHHHHHHHHHHGGGS---HHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn..adgwrillglqlvpallllilllflPESPry 197
                  +  l+++R l+G +vG+asv++P++isE+Ap+++Rg+l++l+++ai++G+l a+ +++++  + +   d wr++l +q++pa+ l+++++ +PESPr+
  CTQ28127.1 104 DITTLLIARALLGYAVGGASVTAPTFISEVAPTEMRGKLTGLNEVAIVIGQLAAFAINAIIGIIWGhlPDVWRYMLLVQAIPAICLFVGMWRAPESPRW 202
                 9************************************************************777777999***************************** PP

                 HHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHHHSH.......HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..H CS
    Sugar_tr 198 lvekgkeeeakevlaklrgeedadrelaeekdsleaeqeeekaswkellsskt....vrqrlligvvlqifqqltGinaimyysptifenlglsks..l 290
                 l++k++++ea  +l+++r  e a++e +++ + ++ e  + k s ++ + ++     +++ ll+g+  +++qq tG+n+imyy+++i++ +g+s+   l
  CTQ28127.1 203 LISKNRHDEALHILKQIRPAERAQKEYDDISTLIKIEAGN-KYSAQSTFATIVktpwILKILLVGITWAALQQTTGVNVIMYYGTEILSAAGFSERtsL 300
                 ********************************99999544.555555555544456699************************************9999 PP

                 HHHHHHHHHHHHHHHHH.HHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHH CS
    Sugar_tr 291 lvtiivgvvnfvatfva.iflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskal 388
                 + +++ gv  +   +++ +flvdrf R+t+ + G+a+ma + +i++ +++ +  ++  ++ ++  + alf+ + + ++g + wv+++Elfp+++R++ +
  CTQ28127.1 301 ICNVLNGVFSVGGMLIGvLFLVDRFKRKTIIIYGFAIMATLHLIIA-AVDYTLVGD-LKATAIWLLGALFVGVMQGSMGFITWVVLAELFPLKFRGLSM 397
                 9999999999999999977**************************9.555555553.55777777889999999999********************** PP

                 HHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGG CS
    Sugar_tr 389 aiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeiee 450
                  i+v+ +w++n ++s+lfp ++ ++g g+vf++fa++++l+i+fv+f +pet +++le++e+
  CTQ28127.1 398 GISVFFMWIMNAVVSYLFPLLQAKLGLGPVFFIFAAINYLAILFVVFALPETSNKSLEQLEA 459
                 **********************************************************9987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9  21.2   1.9e-33   8.4e-30       3     297 ..      24     349 ..      22     353 .. 0.77
   2 !   29.9  17.3   5.8e-11   2.6e-07      49     187 ..     313     461 ..     308     477 .. 0.80

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 1.9e-33
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgaga 101
                 ++++l +++ ++++ a++  l++   ++p++ gl++++  +gaa++s+++G ++d fGrr++ll+  ++f++g+ll + a+ +++ll++r+l G + g+
  CTQ28127.1  24 FGGLLFGYDTGVINGAFS-SLKQYMALTPTTEGLVMSVLLVGAALGSVFGGKFADYFGRRKYLLFLSFVFLIGALLSAAAPDITTLLIARALLGYAVGG 121
                 8999**************.9*****************************************77777777777735555347778*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.....Wravfyilaivsllafvlfllllpeepperkrkspkeee....... 188
                 +  ++ ++i++++p e rg+ +gl  +++ +G + + ++ +++   +g     Wr++ ++ ai ++ +fv      ++++++r+  s+ +         
  CTQ28127.1 122 ASVTAPTFISEVAPTEMRGKLTGLNEVAIVIGQLAAFAINAIIGIIWGhlpdvWRYMLLVQAIPAICLFV---GMWRAPESPRWLISKNRHDealhilk 217
                 ********************************************9999********************99...66677777777777777777799998 PP

       MFS_1 189 .....................kgtgpaplvp........awkallkdpvlwillialllfffgfsg.........lltllplylqevlglsglllagll 249
                                      +                  +  ++k p    +++ +ll+++ +++         ++++ +  + +  g+s    ++l+
  CTQ28127.1 218 qirpaeraqkeyddistlikiE--------AgnkysaqsTFATIVKTP----WILKILLVGITWAAlqqttgvnvIMYYGTE-ILSAAGFS--ERTSLI 301
                 8888888777666666666553........033444444688888888....444444444444443344544535555555.59999999..444445 PP

       MFS_1 250 lallalvgailallagrls..drlgrrrrlllallllllaalglallavt 297
                   +l  v+ ++++l+g l   dr++r   ++++++++++a+l l+++av 
  CTQ28127.1 302 CNVLNGVFSVGGMLIGVLFlvDRFKR--KTIIIYGFAIMATLHLIIAAVD 349
                 555555555554444443335**988..7777777777777777777765 PP

  == domain 2  score: 29.9 bits;  conditional E-value: 5.8e-11
       MFS_1  49 slplGrl..sdrfGrrrvlllglllfalg.lllll..fa.....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailg 137
                  +++G+l  +drf r+ +++ g++++a   l++++  ++         ++l++ ++ G+++g++  +  +++a++fp + rg+ +g+   ++ +  ++ 
  CTQ28127.1 313 GMLIGVLflVDRFKRKTIIIYGFAIMATLhLIIAAvdYTlvgdlKATAIWLLGALFVGVMQGSMGFITWVVLAELFPLKFRGLSMGISVFFMWIMNAVV 411
                 444444444****8888************6666664432445653344799999********************************************* PP

       MFS_1 138 pllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                   l +ll + lg   vf+i+a++  la++++++ lpe+  ++  + ++e+
  CTQ28127.1 412 SYLFPLLQAKLGLGPVFFIFAAINYLAILFVVFALPETSNKSLEQLEAEL 461
                 ***************************99966666666665555555554 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   3.1   8.1e-13   3.7e-09      80     229 ..      54     207 ..      35     219 .. 0.75
   2 !    5.2   7.0    0.0012       5.6      69     218 ..     287     447 ..     265     469 .. 0.73

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 8.1e-13
       TRI12  80 sslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpag.asplfvgelmsn..ktkflgllivsipv 175
                 ++l+ ++  +g a+  +  g+++d fgrr +++    + l+ga++ ++a  + tll a +llg a g a  ++p f+ e+     + k+ gl  v+i +
  CTQ28127.1  54 EGLVMSVLLVGAALGSVFGGKFADYFGRRKYLLFLSFVFLIGALLSAAAPDITTLLIARALLGYAVGGASvTAPTFISEVAPTemRGKLTGLNEVAIVI 152
                 577777888999**99*************************************************99886378******97541267888887776543 PP

       TRI12 176 ..vvtsglspylgqrl.aiqgswrwifyiyiitsaiavll.ivvwyyppsfaqlhgkk 229
                   ++  +++  +g     +   wr+++ +  i    a+ l + +w  p s + l  k+
  CTQ28127.1 153 gqLAAFAINAIIGIIWgHLPDVWRYMLLVQAIP---AICLfVGMWRAPESPRWLISKN 207
                 115555566666654413455677666555443...4444055899998888877664 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0012
       TRI12  69 nilqdvgqsensslfstlwttgqavsilvmgr..ltdrfgrrpfvilth.il...glvgaivgct.....atkfntllaamtllgvaagpagasp.lfv 155
                 +il   g se +sl+  +     +v  +++g   l drf r+ ++i    i+    l+ a v  t      +    ll a  ++gv  g  g    +++
  CTQ28127.1 287 EILSAAGFSERTSLICNVLNGVFSVGGMLIGVlfLVDRFKRKTIIIYGFaIMatlHLIIAAVDYTlvgdlKATAIWLLGA-LFVGVMQGSMGFITwVVL 384
                 689999**********99999999999999973368******99987542331113444444333111002222233333.457888998886541667 PP

       TRI12 156 gelmsnktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyy 218
                  el+  k + l + i    + +++++  yl   l  +     +f+i+  +  +a+l++v    
  CTQ28127.1 385 AELFPLKFRGLSMGISVFFMWIMNAVVSYLFPLLQAKLGLGPVFFIFAAINYLAILFVVFALP 447
                 8999988888888777778889***************99************999988765443 PP

>> MscL  Large-conductance mechanosensitive channel, MscL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2      0.63   2.8e+03      19      73 ..     148     157 ..      88     174 .. 0.61
   2 ?    0.9   0.7      0.12   5.5e+02      59      87 ..     318     351 ..     278     361 .. 0.64
   3 ?    9.4   0.0   0.00028       1.3      70     115 ..     428     476 ..     363     479 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.63
        MscL  19 vgviiGaaftkiVtslvkdiimpliglllggvdfselkiklkaeaavlkygafiq 73 
                 v+++iG+                                             + +
  CTQ28127.1 148 VAIVIGQ---------------------------------------------LAA 157
                 4444443.............................................222 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.12
        MscL  59 l......kaeaavlkygafiqavinFliiafviFl 87 
                 +       ++++++ yg  i a+++++i a+v ++
  CTQ28127.1 318 VlflvdrFKRKTIIIYGFAIMATLHLII-AAVDYT 351
                 1222344456789999999999998665.555455 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00028
        MscL  70 afiqavinFliiafviFlivkaink...kkkeeeeeeeaeekeeellte 115
                  fi a in+l i fv+F + ++ nk   + ++e +++++ +k+++l++e
  CTQ28127.1 428 FFIFAAINYLAILFVVFALPETSNKsleQLEAELSANHEDKKSTRLTRE 476
                 5999********************9764222233333344455566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3358.63
//
Query:       CTQ28128.1  [L=442]
Description: Maltose-6'-phosphate glucosidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-59  200.0   0.0    3.4e-59  199.5   0.0    1.2  1  Glyco_hydro_4   Family 4 glycosyl hydrolase
    1.3e-50  172.4   0.0    1.7e-50  172.0   0.0    1.2  1  Glyco_hydro_4C  Family 4 glycosyl hydrolase C-terminal domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_4  Family 4 glycosyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.5   0.0   3.8e-63   3.4e-59       2     182 ..       7     185 ..       6     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 199.5 bits;  conditional E-value: 3.8e-63
                    EEEETTTSSSHHHHHHHHHHTTTTCTEEEEEEE-SSHHHHHHHHHHHHHHHHHCTTTCEEEEESSHHHHHTT-SEEEE---TTHHHHHHHHHHCCH CS
  Glyco_hydro_4   2 iviiGgGStifaklllgdlkkteelsvselaLvDideerldaiqtlakklveeagadlkieattdrkealkdadfVitairvGlekareidekipl 97 
                    ++i+GgGSt+++ +++++l++  +++ +e+ L+D+ ++r++ i +++ +lv e  +++k++ ttd++ a++d+dfV+++irvGl+++re dekipl
     CTQ28128.1   7 VTIAGGGSTYTPGIVMMLLENMSRFPLREIRLYDNHHQRQKTIGDACAILVAERFPQVKFSYTTDPQAAFTDVDFVMAHIRVGLYEMREKDEKIPL 102
                    799********************************************************************************************* PP

                    TTTTT-CTTSSSHHHHHHHHHHHHHHHHHHHHHHHHH-TTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHHHHHHHHHC CS
  Glyco_hydro_4  98 ryGieqtiqdtvgpggifrglrtipvlleIakdieelcPdawvlnytNPaavvteallrlvpnikavglChsvigvkeelakllt 182
                    +yG+ +  q+t+gpggi++g+r+i  +le+++++++++P aw+lny+NPaa+v+ea++rl+p  +++++C++++ ++   a++l+
     CTQ28128.1 103 KYGVPG--QETCGPGGIAYGMRSIAGVLELVDYMQQYAPGAWMLNYSNPAAIVAEATRRLRPDARIINICDMPVAIEGLFADILG 185
                    ******..*********************************************************************99999886 PP

>> Glyco_hydro_4C  Family 4 glycosyl hydrolase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.0   0.0   1.9e-54   1.7e-50       1     208 []     196     417 ..     196     417 .. 0.92

  Alignments for each domain:
  == domain 1  score: 172.0 bits;  conditional E-value: 1.9e-54
                     EEEETTEEEEEEEE.CTTEEHHHHHHHHHHH..............HHHHHHCTGGGTSHHHHHHHH.HHSSEEECGGHHCTTSS.HCHHHH.... CS
  Glyco_hydro_4C   1 vaGlNHlaWllkle.dkGeDlypelrelvee..............dewleeiaekkaervridllr.rlgllpteysrhyaEYvpylkrea.... 75 
                     ++GlNH++W+++++ + G+Dl+p l+++v+e              ++w+e++++ k      d++  ++ +lp++y+++y     +++++     
      CTQ28128.1 196 YYGLNHFGWWTSITdKAGNDLMPALKRHVAEqgysspkedfqhkaPSWIETFKKVK------DVFAlDPSTLPNTYLKYY-----LYPDYEvahs 279
                     79************889*************************99999999999975......67777*************.....7776555556 PP

                     .SHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHSSCHTS-S............HHHHHHHHHHTS-EEEEEEEE-TTSSTTS-TTSEEEEEEEEET CS
  Glyco_hydro_4C  76 .peliekektraevvkevekelfeelekeklelekrsgey............avdiieaivtdkprrlvvnvpNnglIpnLpddavVEvpclvdk 157
                      pe ++    ++ev++++eke+f+ +++    +++r++++            +vd++ ai+ ++++r+ ++v+Nng+I+n+++ a+VEvpclv+ 
      CTQ28128.1 280 dPEFTR----ANEVMAGREKEVFDMARE----ITRRGTAEgahfhagahatfIVDLACAIAFNTQERMLLIVENNGAIANFDETAMVEVPCLVGV 366
                     677777....99***************9....66666666667888888888******************************************* PP

                     TEEEEB--CS-HHHHHHCHHHHHHHHHHHHHHHHHTBHHHHHHHHHCSTT- CS
  Glyco_hydro_4C 158 ngirpvavgelpeqlaallrtniaveeltveAalegdrelalqallldplv 208
                     ng++p+a+g++p ++++l+++++ave+l+v+A++eg++++++qa++l ++v
      CTQ28128.1 367 NGPEPLAMGKIPSFQKGLMEQQVAVEKLVVDAWIEGSYQKLWQAIALSKTV 417
                     **********************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3453.23
//
Query:       CTQ28129.1  [L=510]
Description: PTS family enzyme IIC/enzyme IIB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-50  169.8  30.7    9.2e-50  169.5  30.7    1.1  1  PTS_EIIC  Phosphotransferase system, EIIC
    7.1e-11   41.4   5.9      6e-10   38.5   0.1    2.4  2  PTS_EIIB  phosphotransferase system, EIIB


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.5  30.7     1e-53   9.2e-50       1     324 []      11     346 ..      11     346 .. 0.92

  Alignments for each domain:
  == domain 1  score: 169.5 bits;  conditional E-value: 1e-53
    PTS_EIIC   1 sdgfmlpiplliagGillglgnlpnssdlkglss.lgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisv 98 
                 s++++ p+  l+a G+l++l++   +++  ++++ +g + +     +++ ++ +a +  L+ lf+ g a glak +k+ a++ +++ +l+  +  a+++
  CTQ28129.1  11 SKAMIGPVLYLPAIGLLIALFS--MTTNRLWVDEsSGLYLMG----KFVSSMLWALMNHLGFLFCLGLASGLAKTRKAEAAFVAAMTWLMYLA--ANNS 101
                 689*******************..556788888854444455....5******************************************9777..9999 PP

    PTS_EIIC  99 lllaagala..........sakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgg 187
                 +l+ +  la          s+++ i+g+++ ++gvf +ii g  +a+++n+++    i+   +l +  ++ +v i+++ + +  ++++  ++wp++  g
  CTQ28129.1 102 WLTLTHRLAtgatnaqlygSGQTFIFGFQVIDMGVFLGIILGCAVAFVHNRVVG---IEFRGALSIYGNSKLVLIVMLPL-VGMFAIATVYLWPVVELG 196
                 9999988888********************************************...**********************5.55559************* PP

    PTS_EIIC 188 lnalglllggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagk...............eaahiltgefvsvmfGgpgatla 271
                 ++al +++++ g +lgv+++gfl+r+lip+GlHh +  pf+fts+gg l i +q+++ga+                + a++lt ++   +fG +g++la
  CTQ28129.1 197 ISALTGFMKSFG-ALGVFLYGFLNRFLIPTGLHHLIWSPFVFTSIGGQLLIDGQTVIGAKPiflaeiarhpvdalsDSARFLTYGM-VKIFGTAGMALA 293
                 ***99*******.99*******************************************5555666666767888888888888887.479********* PP

    PTS_EIIC 272 lyiaaflekkskqkkllgsaaltpflfGItepleFgfpfvlnlllfipallag 324
                  y +a++e+k + k +l+ + +t++l+GItep+eF f+f+++ll +i +ll+g
  CTQ28129.1 294 FYRTAKAENKQRLKVTLIPLIVTSVLVGITEPFEFLFIFTAPLLWLIYSLLDG 346
                 *************************************************9987 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   1.7    0.0028        25      19      25 ..     403     409 ..     401     410 .. 0.87
   2 !   38.5   0.1   6.7e-14     6e-10       3      33 ..     437     467 ..     436     468 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0028
                 -SSEEEE CS
    PTS_EIIB  19 CaTRLRl 25 
                 C+TRLRl
  CTQ28129.1 403 CITRLRL 409
                 ******8 PP

  == domain 2  score: 38.5 bits;  conditional E-value: 6.7e-14
                 HHHHH-.GGGEEEEEE-SSEEEEEES-GGGS CS
    PTS_EIIB   3 IldalGGkdNIesvthCaTRLRltlkDaskv 33 
                 ++++lGGk+N+  v +C TRLR+ ++D++++
  CTQ28129.1 437 VIAGLGGKENVCAVGNCFTRLRVDVRDPALI 467
                 689*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.20s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3930.52
//
Query:       CTQ28130.1  [L=232]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-33  113.7   0.1    8.7e-33  113.1   0.1    1.2  1  UTRA      UTRA domain
    5.8e-21   73.9   0.1      1e-20   73.1   0.1    1.4  1  GntR      Bacterial regulatory proteins, gntR family
    1.3e-05   24.8   0.1    4.5e-05   23.1   0.0    1.8  2  HTH_DeoR  DeoR-like helix-turn-helix domain
     0.0054   16.6   0.1      0.013   15.4   0.1    1.6  1  HTH_11    HTH domain
     0.0067   16.1   0.1      0.014   15.0   0.1    1.6  1  HTH_41    Helix-turn-helix domain
  ------ inclusion threshold ------
       0.07   13.5   0.0       0.16   12.3   0.0    1.6  1  Rrf2      Transcriptional regulator
      0.071   13.1   0.2        4.2    7.4   0.0    3.0  3  HTH_12    Ribonuclease R winged-helix domain


Domain annotation for each model (and alignments):
>> UTRA  UTRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.1   3.4e-36   8.7e-33       5     140 ..      90     224 ..      88     225 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 3.4e-36
                 SEEEEEEEEEEEE--HHHHHHHTS-TTSEEEEEEEEEEETTEEEEEEEEEEEGGGTTTCHHHHHHCS-HHHHHHHHHTTSEEEEEEEEEEEE--HHHHH CS
        UTRA   5 epktevlsleevpasaeiaeaLglpagepvlrieRlrladgepvaleesylpaslvpdlleedleegslyayleerlgvpitraeetiearladaeeae 103
                 +++++v++++ + a+++ia++L++++ge+v++++Rlrl+d++p+++e sy+p + +p l   +l e+s + y++++++++i +++ + +++la++e+ae
  CTQ28130.1  90 NYRNKVIEFTLLDAPPAIAQQLKIQPGEKVYYVRRLRLIDEVPILVENSYIPFATFPWLSVGNL-EQSKFNYFKKECHITIIESHRSYTPVLATREQAE 187
                 6899************************************************************.********************************** PP

                 HHTSTTT-EEEEEEEEEEETTSCEEEEEEEEEETTTE CS
        UTRA 104 lLgisagspvLviervtydadgrpveysrsyyrgdrf 140
                 lL+++++s +L++++++y ++  +v++s+ y +++++
  CTQ28130.1 188 LLQVAPNSLLLRVQSISYAQNRAIVDFSEIYQNTSKY 224
                 *******************************999988 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.1     4e-24     1e-20       2      64 .]       3      65 ..       2      65 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 4e-24
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                y++++ +Lr +I+s  ++ Gd+LPse++Laae++Vs +t+R+AL  Le+e+l+ rr+g+Gt +
  CTQ28130.1  3 YKKIATELRTRINSDDYAVGDMLPSEKALAAELKVSVMTLRKALALLEEEKLIARRHGSGTCI 65
                899*********************************************************965 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.7e-08   4.5e-05      18      50 ..      29      61 ..      27      67 .. 0.93
   2 ?   -2.4   0.0       1.6   4.1e+03      15      28 ..     180     193 ..     179     194 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.7e-08
    HTH_DeoR 18 eelvellgvSeaTiRRDLneLeeqglltRthGG 50
                + l+++l+vS +T R+ L+ Lee+ l+ R hG 
  CTQ28130.1 29 KALAAELKVSVMTLRKALALLEEEKLIARRHGS 61
                5799***************************95 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.6
    HTH_DeoR  15 lsveelvellgvSe 28 
                 l + e +ell+v++
  CTQ28130.1 180 LATREQAELLQVAP 193
                 56888899999987 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1     5e-06     0.013      19      42 ..      29      52 ..      27      62 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 5e-06
      HTH_11 19 eeLAeeLnvSrrtvrrdIkaLeel 42
                + LA eL+vS +t r+ ++ Lee 
  CTQ28130.1 29 KALAAELKVSVMTLRKALALLEEE 52
                68*******************986 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   5.6e-06     0.014       2      37 ..      21      56 ..      20      63 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.6e-06
      HTH_41  2 vGdRlktIeelakeleLSvGlvQkALklLeddkais 37
                vGd l++ + la el +Sv +  kAL lLe++k i+
  CTQ28130.1 21 VGDMLPSEKALAAELKVSVMTLRKALALLEEEKLIA 56
                7999*****************************996 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.4e-05      0.16      28      62 ..      28      62 ..      20      70 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.4e-05
                HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT- CS
        Rrf2 28 seeiaerqnispsylekilakLrkaglvksvrGkg 62
                 +++a++ ++s   l+k la L++++l+  + G g
  CTQ28130.1 28 EKALAAELKVSVMTLRKALALLEEEKLIARRHGSG 62
                578*****************************983 PP

>> HTH_12  Ribonuclease R winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.44   1.1e+03      17      27 ..       4      15 ..       2      23 .. 0.77
   2 ?    7.4   0.0    0.0016       4.2      29      58 ..      36      65 ..      25      71 .. 0.81
   3 ?    1.4   0.0      0.12   3.2e+02      18      45 ..     106     131 ..     104     139 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.44
      HTH_12 17 keiaeeLkkr.g 27
                k+ia+eL+ r +
  CTQ28130.1  4 KKIATELRTRiN 15
                789999998853 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0016
      HTH_12 29 digeravRyrLrkleergltrrvgyagrel 58
                +++  ++R  L  lee++l+ r   +g+ +
  CTQ28130.1 36 KVSVMTLRKALALLEEEKLIARRHGSGTCI 65
                5666799************99988888877 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.12
      HTH_12  18 eiaeeLkkr.gydigeravRyrLrkleer 45 
                 +ia++Lk + g+++    vR rLr ++e 
  CTQ28130.1 106 AIAQQLKIQpGEKV--YYVR-RLRLIDEV 131
                 59999999999999..6676.79998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1956.49
//
Query:       CTQ28131.1  [L=247]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-32  113.1  35.4    1.8e-32  112.9  35.4    1.0  1  TauE       Sulfite exporter TauE/SafE
  ------ inclusion threshold ------
       0.15   12.0   0.0       0.15   12.0   0.0    3.0  3  RseC_MucC  Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9  35.4     2e-36   1.8e-32       2     235 ..      10     239 ..       9     240 .. 0.87

  Alignments for each domain:
  == domain 1  score: 112.9 bits;  conditional E-value: 2e-36
        TauE   2 llagllaGfvagllGiGggliavPlLllllppavavatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpsellkllfgvll 100
                 ll++++aG+v+g++G+G  ++a+ lL ll+pp++a+a+ +l +++t+l+++la     ++ +r+l+l++ g++iG+l+G+ ll  l++++  l++g++l
  CTQ28131.1  10 LLIFIAAGLVKGVTGMGLPTVAMGLLGLLMPPQAAAALLVLPSLLTNLWQLLAGPALAQI-VRRLWLMMTGIIIGTLAGSSLLIGLNPRWSALALGAAL 107
                 789999**********************88************************996555.799*********************************** PP

        TauE 101 lllallmllrkkrsrakgrerrptaillvligglvGllsGllGiGgGfllvpllllllglplkk..avatslllilvislagalgyal.agavd..wpl 194
                 +++a + l ++      +++ r   +l++l+ggl+G+++G +G+     ++p++ +l+ l +++  +v++  l +++++la a+g+al  g+ d  w l
  CTQ28131.1 108 IVYAGYALCSPV----FQVSGRVEKWLSPLMGGLTGVITGATGVF----VIPAVPWLQALGFRRdeLVQALGLSFTLSTLALAAGLALhDGWHDdaWLL 198
                 *******98664....33557788887889988899999986665....66677777655555555*******************99954444444666 PP

        TauE 195 lllllpgallGallGarlarrlsertlrrlfallllvlgvk 235
                  +l+l++allG++lG+r+++rls++++r+ f+l+ll+lg+ 
  CTQ28131.1 199 SALALLPALLGMWLGQRIRSRLSPQRFRQGFLLFLLALGIE 239
                 666************************************96 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.5      0.27   2.4e+03      76     105 ..      10      38 ..       5      50 .. 0.63
   2 ?    1.5   1.8     0.029   2.6e+02      76     109 ..      78     114 ..      73     133 .. 0.66
   3 ?   12.0   0.0   1.7e-05      0.15      56     120 ..     159     222 ..     158     230 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.27
   RseC_MucC  76 lllilgallgsallgssellaalgallglv 105
                 ll++++a l++ ++ +  l +++++llgl+
  CTQ28131.1  10 LLIFIAAGLVKGVT-GMGLPTVAMGLLGLL 38 
                 56666777777774.444555555555554 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.029
   RseC_MucC  76 lllilgallgsall..gssella.algallglvlgfl 109
                  ++i+g+l+gs+ll  ++  + a alga l++++g+ 
  CTQ28131.1  78 TGIIIGTLAGSSLLigLNPRWSAlALGAALIVYAGYA 114
                 5788999999999896444443313444444444444 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 1.7e-05
   RseC_MucC  56 vgieeksllkaallvYllPllllilgallgsallgssellaalgallglvlgflivrllskrlkk 120
                 +g++++ l++a  l + l  l+l +g++l + + +++ +l  ++all ++lg+++ +++++rl+ 
  CTQ28131.1 159 LGFRRDELVQALGLSFTLSTLALAAGLALHDGW-HDDAWLLSALALLPALLGMWLGQRIRSRLSP 222
                 688999***************************.79999999***************99999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1999.08
//
Query:       CTQ28132.1  [L=294]
Description: Transcriptional regulator LysR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-39  133.9   7.5    9.5e-39  132.9   7.5    1.3  1  LysR_substrate  LysR substrate binding domain
    1.8e-17   63.0   3.0    5.2e-17   61.5   0.6    2.4  2  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0076   16.7   0.1       0.24   11.8   0.0    2.5  2  Terminase_4     Phage terminase, small subunit
  ------ inclusion threshold ------
      0.071   12.8   1.8       0.15   11.8   1.3    1.9  2  SBP_bac_11      Bacterial extracellular solute-binding protei


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   7.5   2.1e-42   9.5e-39       3     206 ..      90     293 ..      89     293 .. 0.98

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 2.1e-42
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvs 97 
                     g+rg+Lr+ a +++ + +lp  la+++a++P v++e +e +s++++  +++g + ++++++  ++  l+ +p+a++plvl+++p+ pLa++++v+
      CTQ28132.1  90 GQRGTLRLFANTSAMSAFLPGKLAAWMAAHPAVQIETEERTSADIVSCILAGVAQAGVVSDAVDPGPLRLDPVADDPLVLIVPPARPLAEKQEVA 184
                     579******************************************************************************************** PP

                     GGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCC CS
  LysR_substrate  98 ledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgre 192
                     ++++ +epl+ l + s+l++++e+  +e g++++v++++++++ l+++va+G G a+lpr +++++ ++    ++ l++  ++r+l+l+y+ +  
      CTQ28132.1 185 FAAVLNEPLVALYQTSALQQHIEQHAAELGQALNVRVRMSHFAGLCEMVAHGAGGAILPRVIAERYRQRYSFAVIGLQDRWAQRRLCLCYQDDAS 279
                     *******************************************************************************5555************ PP

                     CHHHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidflre 206
                     lspa+r+++++lr+
      CTQ28132.1 280 LSPAMRRLLEWLRQ 293
                     ************86 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.6   1.2e-20   5.2e-17       2      60 .]       6      64 ..       5      64 .. 0.98
   2 ?    0.9   0.1     0.098   4.4e+02      27      48 ..     199     220 ..     196     227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 1.2e-20
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                 +lrlf+a++++gs+t+ A   +l+ +++s +++++E+e+gvpL++R+ rg+++TeaGe
  CTQ28132.1  6 ADLRLFIAIVDTGSITGGAANAHLALASASERLRKMEAEIGVPLLHRHARGVTMTEAGE 64
                68********************************************************7 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.098
                 HHHHHHHHHHHHHHHTS-SEEE CS
       HTH_1  27 qpavsrqikrLEeelgvpLfeR 48 
                  +a+ ++i +  +elg+ L +R
  CTQ28132.1 199 TSALQQHIEQHAAELGQALNVR 220
                 5899999**********99888 PP

>> Terminase_4  Phage terminase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   5.4e-05      0.24      28      79 ..      30      88 ..      24      89 .. 0.91
   2 ?    2.1   0.0      0.06   2.7e+02      63      92 ..     192     223 ..     176     233 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.4e-05
  Terminase_4 28 ayceayaryreaekki.......ekeGvtittaegegakkknpavtilnsaekelrkla 79
                 a+++a +r r++e++i       +++Gvt+t+a +  a  ++p++++++++++ ++++a
   CTQ28132.1 30 ALASASERLRKMEAEIgvpllhrHARGVTMTEAGEVLARHARPLLAQQQRLRQAMHAFA 88
                 5789999*********999999999******777666*******************987 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.06
  Terminase_4  63 pavt..ilnsaekelrklaselGLtpssRarl 92 
                  p+v+  +   +++++ ++a+elG     R+r+
   CTQ28132.1 192 PLVAlyQTSALQQHIEQHAAELGQALNVRVRM 223
                  55543366778999*********888888777 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.3   3.3e-05      0.15      17      94 ..     112     180 ..      95     228 .. 0.70
   2 ?   -2.6   0.0      0.85   3.8e+03     200     218 ..     276     294 .]     231     294 .] 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.3e-05
                 HHHH.HHHH---EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGGGG-EEEEEEEEEEEESTT-TT--- CS
  SBP_bac_11  17 aaaF.eahtgvkvevsaggsgklarqiadgarpDvwipassawlellaaaglvqaesavplassplviavpkgnpkkik 94 
                  aa+ +ah+ v++e +++ s+++++ i++g        a+++ + ++++ g ++     p+a  plv++vp+ +p   k
  CTQ28132.1 112 LAAWmAAHPAVQIETEERTSADIVSCILAG-------VAQAGVVSDAVDPGPLR---LDPVADDPLVLIVPPARPLAEK 180
                 445548899999999999999999999999.......66677777778888887...9999999999999999985333 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.85
                 E-TT--HHHHHHHHHTTSH CS
  SBP_bac_11 200 kkaakreaAraFlafLrsp 218
                 ++a+ + a r++l++Lr+p
  CTQ28132.1 276 DDASLSPAMRRLLEWLRQP 294
                 4555556777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2383.92
//
Query:       CTQ28133.1  [L=291]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-35  122.0   0.1    3.8e-35  121.4   0.1    1.2  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
    2.1e-14   53.8   0.1    4.2e-14   52.8   0.1    1.5  1  NAD_binding_11   NAD-binding of NADP-dependent 3-hydroxyisobu
    2.2e-07   30.6   0.2    1.1e-06   28.4   0.2    2.0  1  ApbA             Ketopantoate reductase PanE/ApbA
    2.8e-07   31.0   0.2      8e-07   29.6   0.1    1.8  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    3.7e-06   26.6   0.0      8e-06   25.5   0.0    1.5  1  IlvN             Acetohydroxy acid isomeroreductase, NADPH-bi
    1.5e-05   24.5   0.0    2.8e-05   23.6   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
    4.4e-05   23.5   0.4    0.00034   20.6   0.3    2.5  2  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
    0.00052   19.9   0.2     0.0031   17.4   0.0    1.8  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
     0.0019   18.3   0.0     0.0041   17.2   0.0    1.5  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.011   16.0   0.0      0.047   13.9   0.0    1.9  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.061   12.3   0.0      0.087   11.8   0.0    1.2  1  PDH              Prephenate dehydrogenase
       0.09   12.7   0.0       0.19   11.6   0.0    1.6  1  NAD_binding_10   NAD(P)H-binding


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   0.1   2.5e-38   3.8e-35       1     156 [.       6     162 ..       6     164 .. 0.97

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 2.5e-38
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE-S---HHH CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdeviegllealkkgdilidgstssped 96 
                    k++++GlG MG+ +a+nllk+g++va++nr++++ e+l a+g++++++++++va+++v+i m+ +g+a+ ev+ ++++a+++++i+ +++t+   +
     CTQ28133.1   6 KVAVLGLGAMGHAFASNLLKNGFTVAGWNRSPARGEDLQAHGLSLHATPQQAVADAEVIISMLADGEATLEVLAQIAPACQPQAIYCQMGTIGLPE 101
                    699********************************************************************************************* PP

                    HHHHHHHHHHTT..-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEEEEEE CS
  NAD_binding_2  97 trelakelkekg..lkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigakvthv 156
                    tr+  + l+e +  ++++daPVSG+++ Aek+++ ++++G++e+ ++++pv+ ai++ ++ +
     CTQ28133.1 102 TRQAIAMLRELQpaMTYIDAPVSGTKAPAEKAQILVLASGDREKGAAAEPVFAAISRGTQ-W 162
                    *********998889****************************************98655.5 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.1   2.8e-17   4.2e-14       1     121 [.     167     284 ..     167     285 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 2.8e-17
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvlsrdfdpgFaldlmlKDlglalelareagaplpll 95 
                     G+ q +Klv n+ l   +  ++E   la+ +G  p+++  +++++  ++  ++ kl  +++s++f+p+ +l++ lKD +lal+la+ + +  p l
      CTQ28133.1 167 GNSQKMKLVLNAWLISMMQGIAESAQLAKTLGFTPDQLWSALEGGPLAAPYVKVKLD-AIASEQFTPQMQLAHALKDARLALSLAEPHTM--PGL 258
                     788**********************************************99999997.8*************************998876..9** PP

  NAD_binding_11  96 alaeqlyaaaaaegggdaDhsaivrl 121
                     + +++l+++aa +g +++D sa++++
      CTQ28133.1 259 ENIAELWQQAADAGYAGEDLSAVYQW 284
                     ***********************987 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.2   7.3e-10   1.1e-06       1      53 [.       7      60 ..       7     128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 7.3e-10
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilr 53
                +a+lG+Ga+G  +a +L k+g +v  ++rs+ r e+l+ +Gl+l+   ++ ++ 
  CTQ28133.1  7 VAVLGLGAMGHAFASNLLKNGFTVAGWNRSPaRGEDLQAHGLSLHATPQQAVAD 60
                69******************************************9998444443 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.1   5.3e-10     8e-07       1      66 [.       6      65 ..       6      90 .. 0.83
   2 ?   -2.5   0.0       5.3     8e+03      26      38 ..     133     145 ..     115     159 .. 0.56

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 5.3e-10
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEE CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvv 66
                   k++++G G mg+a+as+ll++g     +  + +r+p + e l+++ g ++ a + ++a+++a+v++
     CTQ28133.1  6 KVAVLGLGAMGHAFASNLLKNG---FTVA-GWNRSPARGEDLQAH-GLSLHA-TPQQAVADAEVII 65
                   79********************...9999.99**********877.456666.889********98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.3
                    GCEEEEEESSCCC CS
  F420_oxidored  26 heivvansrnpek 38 
                     +i+v +s + ek
     CTQ28133.1 133 AQILVLASGDREK 145
                    3333333333333 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   5.4e-09     8e-06       6      84 ..       6      84 ..       3      93 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 5.4e-09
                -EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEE.EHHHHHHT-SEEEE-S-H.HHHHHHHHHHTGGG CS
        IlvN  6 kiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevl.tvaeavkkadvvmiliPD.elqkevyeeeiepn 84
                k+av+G G+ Gha a nl  +g+ v+ g +++ +  +  +++g++ + t ++av++a+v++ ++ D e+  ev+ ++i+p 
  CTQ28133.1  6 KVAVLGLGAMGHAFASNLLKNGFTVA-GWNRSPARGEDLQAHGLSLHaTPQQAVADAEVIISMLADgEATLEVL-AQIAPA 84
                8**********************996.6666667889999999997626799*******999888824445555.666665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.8e-08   2.8e-05      38     142 ..       6     110 ..       4     133 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.8e-08
                   EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB- CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv.sleellaesDivslhlpltpetrhlinaeelakmkkgailiNtaRGglvd 133
                   +v+++GlG++G+a+a  l + g+ v +++rs+ + e+ +++g++l+ + ++++a++++++ +l   ++t +++ +    +++++ai   ++  gl +
    CTQ28133.1   6 KVAVLGLGAMGHAFASNLLKNGFTVAGWNRSPARGEDLQAHGLSLHaTPQQAVADAEVIISMLADGEATLEVLAQ-IAPACQPQAIYCQMGTIGLPE 101
                   699*********************************9*****9665599**********9999988888777643.334566666665555555555 PP

                   HHHHHHHHH CS
  2-Hacid_dh_C 134 eeaLleaLk 142
                   ++  +++L+
    CTQ28133.1 102 TRQAIAMLR 110
                   555555555 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.3   2.2e-07   0.00034       1      43 [.       6      48 ..       6     117 .. 0.85
   2 ?   -0.7   0.0      0.84   1.3e+03      79     109 ..     160     190 ..     128     204 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.2e-07
                    -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSS CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeineehe 43
                    k+avlG G+ G a+A  l +ng +v  w r+++  e+++++  
      CTQ28133.1  6 KVAVLGLGAMGHAFASNLLKNGFTVAGWNRSPARGEDLQAHGL 48
                    79******************************99999887655 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.84
                     HHHHHHHHHHHCCC--TT-EEEE---SEET. CS
  NAD_Gly3P_dh_N  79 sqalrevlkklkgllkkkailvsliKGieeg 109
                     +q + e  ++ k +l  +a l+s++ Gi e+
      CTQ28133.1 160 TQWFGEAGNSQKMKLVLNAWLISMMQGIAES 190
                     5666777777777778899999999999663 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.1e-06    0.0031       1      35 [.       6      40 ..       6      46 .. 0.88
   2 ?   -0.7   0.0      0.73   1.1e+03      71     109 ..      52      90 ..      41      96 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.1e-06
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseeal 35
                kvav+G G mG+  a+ ++++g++V   ++s+++ 
  CTQ28133.1  6 KVAVLGLGAMGHAFASNLLKNGFTVAGWNRSPARG 40
                79***********************9988887765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.73
                 S-HHHHH.C-SEEEE-S-SSHHHHHHHHHHHHCCS-TTSE CS
     3HCDH_N  71 tdleeav.dadlviEavvEnlelKrkvfaelekiakpdai 109
                 +  ++av da+++i   + + e   +v+a+++ +++p+ai
  CTQ28133.1  52 ATPQQAVaDAEVIISMLA-DGEATLEVLAQIAPACQPQAI 90 
                 455555557777775554.556678999999999999998 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.7e-06    0.0041      14      83 ..       6      68 ..       2      87 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.7e-06
                  EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-S CS
  Shikimate_DH 14 kvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisat 83
                  kv ++G G m++  a++Ll++g++ v+  NR+ +r ++l  +              ++++a+a+v+is  
    CTQ28133.1  6 KVAVLGLGAMGHAFASNLLKNGFT-VAGWNRSPARGEDLQAHG--L----SLHATPQQAVADAEVIISML 68
                  899********************9.**************5433..3....22233356677777777755 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.2e-05     0.047       1      78 [.       7      79 ..       7      91 .. 0.82
   2 ?   -1.2   0.0       1.5   2.2e+03      46      80 ..     219     253 ..     211     280 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.2e-05
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SS CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsp 78
                     v ++G G++G+a+a  l++++    +++ + rs ++ e l  +a+g +++a+  +a  +++v+ ++l++g++ + ++ 
       CTQ28133.1  7 VAVLGLGAMGHAFASNLLKNGF---TVAGWNRSPARGEDL--QAHGLSLHATPQQAVADAEVIISMLADGEATLEVLA 79
                     679*****************84...366666666666666..5699999999999999999999**999988777665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.5
                      TTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGG CS
  Sacchrp_dh_NADP  46 gvrfeaialdaenyeavLaallkegdlvvnlsppi 80 
                      +v+++aia     ++  La +lk++ l ++l+ p+
       CTQ28133.1 219 KVKLDAIASEQFTPQMQLAHALKDARLALSLAEPH 253
                      56666777777777777888999999998888776 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.8e-05     0.087       2     108 ..      20     126 ..      19     137 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.8e-05
                 HHHHHHTT--SEEEEE-SSHHHHHHHHHTTSSSEEES-GGGGCCGSEEE.E-S-GGGHHHHHHHHHHHS-TT-EEEE--S--CHHHHHHHHHCC..... CS
         PDH   2 aralrrkgfkvtvigydideekaeaalelglvdeatddieavkeadivv.lavPvevilevlkelaphlkedalitDvgsvKekvvreleellke...g 96 
                 a  l ++g   tv g ++++ + e  ++ gl  +at+ ++av +a++++ +    e++levl+++ap+ +++a+++ +g +     r++ ++l+e    
  CTQ28133.1  20 ASNLLKNG--FTVAGWNRSPARGEDLQAHGLSLHATP-QQAVADAEVIIsMLADGEATLEVLAQIAPACQPQAIYCQMGTIGLPETRQAIAMLRElqpA 115
                 67778888..789999999999999999********9.89*****98863445689***********************99655555554444440003 PP

                 GCEEEEEES--- CS
         PDH  97 ksfvgghPmaGt 108
                  +++  +P+ Gt
  CTQ28133.1 116 MTYID-APVSGT 126
                 44443.466666 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00013      0.19       4      89 ..      13      89 ..      11     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
                    SHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHHHHCT CS
  NAD_binding_10  4 GkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeegaknivdaakeag 89
                    G  G++ ++ ll++ g++v    R+p++ ++l+a        +++  +++ ++a+++a++++s l+ g+ + e+ ++i+ a++ + 
      CTQ28133.1 13 GAMGHAFASNLLKN-GFTVAGWNRSPARGEDLQA------HGLSL--HATPQQAVADAEVIISMLADGEATLEVLAQIAPACQPQA 89
                    899***********.5*************98863......33333..356779*************99999999999999988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2175.62
//
Query:       CTQ28134.1  [L=385]
Description: Sugar diacid utilization regulator SdaR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.8e-42  141.8   2.3    1.4e-41  141.3   2.3    1.3  1  Diacid_rec  Putative sugar diacid recognition
    7.3e-13   48.1   1.1    1.9e-12   46.8   0.1    2.3  2  HTH_30      PucR C-terminal helix-turn-helix domain
    2.1e-09   37.7   2.0    1.1e-08   35.4   0.6    2.3  2  GGDEF_2     GGDEF-like domain
    0.00016   22.0   1.1     0.0013   19.1   0.2    2.4  2  GAF_2       GAF domain
     0.0013   18.5   0.2      0.005   16.6   0.2    2.1  1  HTH_8       Bacterial regulatory protein, Fis family


Domain annotation for each model (and alignments):
>> Diacid_rec  Putative sugar diacid recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3   2.3     4e-45   1.4e-41       2     132 ..       4     135 ..       3     137 .. 0.94

  Alignments for each domain:
  == domain 1  score: 141.3 bits;  conditional E-value: 4e-45
  Diacid_rec   2 dkelAqkIveeimeiigyninvmdekGiIIasgdksRigtlHegAlevikekkeveitee.eakklkgvkpGinlpivfngevvGviGitGepeevrpy 99 
                 +++lA++Iv ++m+ii++n+nv+d++G IIasg+++Rig+ He+A evi+++k++ i+++ ea+++++v+pGin pi+++++vv v+Gi+G+p+ +++y
  CTQ28134.1   4 TTALANEIVARAMAIIHHNVNVIDHHGQIIASGERHRIGEQHEVAREVIRTGKRICINNAaEAARFHNVHPGINHPIIYDDRVVMVVGISGDPAAISRY 102
                 789*************************************************888887651677889******************************** PP

  Diacid_rec 100 aelvkktaellleeaelkeqlqrrerakeelve 132
                 ael+  taell+++a++++++++r+r +++l+ 
  CTQ28134.1 103 AELAVLTAELLVRQAIEMRETNWRQRLRDTLFC 135
                 ***************************999876 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.67   2.4e+03      14      26 ..      62      74 ..      59      74 .. 0.85
   2 !   46.8   0.1   5.4e-16   1.9e-12       1      57 [.     311     367 ..     311     369 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.67
                -HHHHHHHHTS-H CS
      HTH_30 14 nisatAkaLhvHr 26
                n++++A+  +vH+
  CTQ28134.1 62 NAAEAARFHNVHP 74
                8899999999996 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 5.4e-16
                 ...HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHHHHHHHH CS
      HTH_30   1 LleTLraylenggnisatAkaLhvHrnTlryRLrrieellgldlddpddrlaLylAl 57 
                 Ll+TL  +++n+    +t+  L++HrnTl+yRL++i++  +ld+  + d+++L +++
  CTQ28134.1 311 LLDTLSSFIANNAEPGKTSLLLGIHRNTLTYRLQQIKKHIQLDPMVFTDLTQLAVSV 367
                 89**************************************************99876 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.14   4.9e+02      55      74 ..      80      99 ..      14     121 .. 0.73
   2 !   35.4   0.6   2.9e-12   1.1e-08       6     116 .]     147     261 ..     140     261 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.14
     GGDEF_2 55 avrgdrlvlllpaedeedae 74
                 +++dr+v+++  +++++a 
  CTQ28134.1 80 IIYDDRVVMVVGISGDPAAI 99
                67888999998888775543 PP

  == domain 2  score: 35.4 bits;  conditional E-value: 2.9e-12
     GGDEF_2   6 eellerarrlgldldgpyvvvvielee...daerllraleealral.gpdalvavrgdrlvlllpaedeedaeallerlarrlgg..lsvriGiGspve 98 
                 +e+l+r  +lg+d+d p+v +v++++    + +++l++l +++++l g + ++   ++++ +l +++++   e+ll+ ++  l+    +++iGiG  ++
  CTQ28134.1 147 QEALHRLLELGFDFDTPRVPIVVTVQVeqhQLSDILSTLLREFSQLsGVSDVILLGSHEILILNALSEA--QETLLRGIEFVLSNqiSHYHIGIGVQAD 243
                 4999***************99999966113444566666666666645555555555555555555554..589999999888878888********** PP

     GGDEF_2  99 glaglrrSyreArrAlrl 116
                 ++ ++r++ r Ar ++++
  CTQ28134.1 244 SAPDIREAIRFARSVIEV 261
                 *************99986 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   3.5e-07    0.0013      50     120 ..      39     104 ..       4     118 .. 0.69
   2 ?    1.0   0.0      0.13   4.7e+02       2      27 ..     176     203 ..     175     260 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.5e-07
                 S-B--..-TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EEEEEE-TTS---EEEEES.........--H CS
       GAF_2  50 ldrpl..geglvgealrtgrpvilndleedpdkkglpaghaglrsflavPlisegrvvGvlnlyankppa...fde 120
                 +  ++   + ++ e++rtg+++ +n+ +e       +a+ +++++++  P+i+++rvv v+++ + +p a   + e
  CTQ28134.1  39 H--RIgeQHEVAREVIRTGKRICINNAAE-------AARFHNVHPGINHPIIYDDRVVMVVGI-SGDPAAisrYAE 104
                 2..3321333688*************666.......4577889999*******99*******9.677766333333 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHS.S...EEEEEE CS
       GAF_2   2 adleelldlvldelvel.g.aalgyill 27 
                 + l+++l+++l+e  +l g +++  ++ 
  CTQ28134.1 176 HQLSDILSTLLREFSQLsGvSDVILLGS 203
                 5689999999999999999777544444 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   1.4e-06     0.005      24      41 ..     328     345 ..     326     345 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.4e-06
                 HHHHHTS-HHHHHHHHHH CS
       HTH_8  24 AArlLGisRrtLyrKLkk 41 
                 ++ lLGi+R+tL+++L++
  CTQ28134.1 328 TSLLLGIHRNTLTYRLQQ 345
                 5679************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3018.22
//
Query:       CTQ28135.1  [L=391]
Description: Glycerate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.9e-127  425.3   1.7   2.1e-127  425.1   1.7    1.0  1  Gly_kinase    Glycerate kinase family
  ------ inclusion threshold ------
       0.13   12.1   0.0        0.3   10.9   0.0    1.6  1  Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain


Domain annotation for each model (and alignments):
>> Gly_kinase  Glycerate kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.1   1.7  2.4e-131  2.1e-127       1     365 [.       3     377 ..       3     378 .. 0.97

  Alignments for each domain:
  == domain 1  score: 425.1 bits;  conditional E-value: 2.4e-131
  Gly_kinase   1 iviapdsFkgslsaaevaeaiaegikkaapeaevvklplaDGGeGtvealva..algge.lvevevtgplgrpveakyglledektAviEmAeasGlkl 96 
                 ivia dsFkgs sa+++++a+a+g++++ ++ e+v++p++DGGeG + +l++   l+g  +++ ++  p+g +v+a +++l  ++ A+iEmA+ +Gl+l
  CTQ28135.1   3 IVIALDSFKGSCSAQAACAAVAQGLRRVDQTLELVEMPVSDGGEGLLSTLADspLLEGAvWQQQRCISPYGLSVQADFLIL-PGERAIIEMAQSCGLEL 100
                 8***************************999********************94447777567999****************.5569************* PP

  Gly_kinase  97 vpeeernplktttyGvGelikaaldkgarkiiigiGGSatnDgGaGmlqaLGvrfldadgkel..epggaaLaklasidlskldprlkdveitvacDvt 193
                  p+++r+  ++++yG+Ge +kaald+g+r++iig+GGSatnDgG+G++qaLG+rf  +dg+ l  ++ g++La++++idls+ldprl++ ei++ cDvt
  CTQ28135.1 101 TPPAQRDVRQASSYGLGEQVKAALDAGCRHLIIGLGGSATNDGGIGFAQALGARFWRKDGTLLpaPAAGQDLAHIQRIDLSGLDPRLQQSEIQASCDVT 199
                 ***************************************************************87789******************************* PP

  Gly_kinase 194 npLlGeeGaaavFgpQKGatpeqveeldaalehlaevlkkdlg......pGaGAAGGlgaallaflgaelksGielvlelvgleeklkeadlviTGEGr 286
                 npLlGe+Ga+ v+g+QKGa+++ ++el+a+++h++++l+++lg      pGaGAAGG+gaal+a++ga+l++Gi+lvlel++ +++l++a l i GEG 
  CTQ28135.1 200 NPLLGEHGATWVYGAQKGADEAALSELEAGMAHYSQLLTQTLGfdvserPGAGAAGGMGAALIAYTGATLRPGIDLVLELLNADDHLRDAALTIVGEGW 298
                 ****************************************887788899************************************************** PP

  Gly_kinase 287 lDsqtlsGKvpvgvaklakkagvpvialaGsveedaeeleeagidavfsildgpesleealeeaaelleeaaeqvarll 365
                 lD+q++ GK+pvgva +a+++gvpv+al+G  +e+ ++l++++ida++si+++p+ l+e++++ + ll++aae+v+r++
  CTQ28135.1 299 LDRQSAFGKAPVGVAGKAARHGVPVVALCGGRDESSRQLYQHHIDAMWSICQRPMALAESMNTCEPLLADAAENVLRTF 377
                 ****************************************************************************986 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.3e-05       0.3      71     107 ..     309     346 ..     251     359 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.3e-05
  Succ_CoA_lig  71 flsaarraark.kpvvvlksGrseagaraaashtgala 107
                    + +a +aar+ +pvv+l  Gr e++++  + h  a++
    CTQ28135.1 309 PVGVAGKAARHgVPVVALCGGRDESSRQLYQHHIDAMW 346
                   456799999999*********************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2944.77
//
Query:       CTQ28136.1  [L=456]
Description: putative general substrate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-46  157.5  39.7    1.5e-26   93.2  14.7    2.0  2  MFS_1       Major Facilitator Superfamily
    1.5e-16   60.4  21.7    3.1e-16   59.3  21.7    1.5  1  Sugar_tr    Sugar (and other) transporter
    1.9e-12   46.5  13.3    4.9e-12   45.1  13.4    1.7  1  MFS_2       MFS/sugar transport protein
     0.0023   16.9   9.7      0.071   11.9   9.7    2.7  1  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2  14.7   3.3e-30   1.5e-26       2     256 ..      42     313 ..      41     315 .. 0.78
   2 !   75.7  24.4   6.7e-25     3e-21       5     167 ..     274     443 ..     270     456 .] 0.82

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 3.3e-30
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllf...a....sslwlllvlrv 93 
                 +l+ +l+a++r +++ + p  +++++ +sp + g +++l +++ av+ +p++ +sdr+G+ +      + ++lg ++l+f   +    ++l+++++lrv
  CTQ28136.1  42 WLIWVLNAYDREMILRLGP-VISKEFSLSPEQWGNIVALIMVALAVLDIPGSIWSDRYGSGWKRARFQVPLVLGYTALSFisgIkaisHGLTAFVLLRV 139
                 667789999**********.9**************************************666666666666666444445333144669999******* PP

       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllll...............pe 174
                    lgag++ p+g++ +a+w+pke+rg+a+g+  +g+ +Ga+l  ++++l+++ +g   Wr++f+++ +v++ ++++++ +                  
  CTQ28136.1 140 GVNLGAGWGEPVGVSNTAEWWPKEKRGFALGVHHTGYPIGALLSGVVASLVLATFGegsWRYCFLLALLVAIPLMIFWAKYStadrintlyqhidsqGL 238
                 ****************************************************9*********************9976666655555555443333322 PP

       MFS_1 175 epperkrkspkeeekgtgpaplvp.............awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalv 256
                 ++p+                   +              ++ l++++ + +     ll+ ++++g+ + lp yl  v gls l  +++l+ ++ l 
  CTQ28136.1 239 TRPAT------------------QesshvakgegmktFLRTLRNRN-ISLTAGNTLLTQIVYMGINVVLPPYLYHVSGLS-LAASAGLSIIFTLT 313
                 22222..................22222223444443455555555.53588888888999999****************.66666666666554 PP

  == domain 2  score: 75.7 bits;  conditional E-value: 6.7e-25
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalf 103
                 ++l+ + ++ ++++lp++l +  g+s ++   l  +++l+  ++++++ +lsd fGr+r+l+++ l++++g++l+ fa++++ l++  ++ Gl a a++
  CTQ28136.1 274 TLLTQIVYMGINVVLPPYLYHVSGLSLAASAGLSIIFTLTGTLGQVIWPWLSDSFGRKRTLIVCGLWMSIGIALFYFATNMPRLIAIQLFFGLVANAVW 372
                 6778888999*******9966666666665558888***********************************555558999999**************** PP

       MFS_1 104 pagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvl 167
                 p+ +a+++d + ++  + a+g++++++ +G  + pll g+l++ +g       + ++f+ +a+ +ll+++l
  CTQ28136.1 373 PIYYAMASDSAEERATSTANGIITTAMFIGGGISPLLMGWLIQFGGgwenpagYIYAFFTMAGCALLGMLL 443
                 ******************************************77778555555555555555555555543 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3  21.7     7e-20   3.1e-16      44     430 ..      69     441 ..       8     451 .. 0.81

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 7e-20
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT....SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk....nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRga 138
                 s  ++g iv++ +v  ++  + +++++dr+G  +  + + v +v g     ++ g       + ++++ Rv v +g+G+   +    ++E  pk++Rg+
  CTQ28136.1  69 SPEQWGNIVALIMVALAVLDIPGSIWSDRYGSGWKRARFQVPLVLGYTALSFISGIkaisHGLTAFVLLRVGVNLGAGWGEPVGVSNTAEWWPKEKRGF 167
                 4569***************************88888877777777755444444333555789999999****************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 139 lvslyqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqe 236
                   +++ +++ +G l++ ++   + +++++   wr+ + l+l+ a+ l+i++           +     +   +l++  ++++ +r + +e +   +++ 
  CTQ28136.1 168 ALGVHHTGYPIGALLSGVVASLVlATFGE-GSWRYCFLLALLVAIPLMIFWAKYS-------TA----DRINTLYQHIDSQGLTRPATQESSHVAKGEG 254
                 **************988877666488888.9*************88888777666.......22....2334555555566777777777777777733 PP

                 .....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHH CS
    Sugar_tr 237 eekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvi 333
                      +k++l++    + + + ++  +++q +++ ++  ++p++++  gls    +  +ii+  + ++  +++ +l+d fGR+++l+++++ m+i  ++
  CTQ28136.1 255 -----MKTFLRTLR-NRNISLTAGNTLLTQIVYMGINVVLPPYLYHVSGLSLAasAGLSIIFTLTGTLGQVIWPWLSDSFGRKRTLIVCGLWMSIGIAL 347
                 .....444555443.345888899999999999999999***********99888999************************************98777 PP

                 HH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH.....T-HHHHHH..HHH CS
    Sugar_tr 334 lgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig.....ggyvflvf..agl 425
                 +      + a+    ++  +++i lf+ l a  + p+ + ++s+ + ++  s+a  i ++++++   +  ll+ ++ +  g     +gy++++f  ag+
  CTQ28136.1 348 F------YFAT----NMPRLIAIQLFFGLVANAVWPIYYAMASDSAEERATSTANGIITTAMFIGGGISPLLMGWLIQFGGgwenpAGYIYAFFtmAGC 436
                 6......3333....34456778888888899999*****************************************99999898886666666511445 PP

                 HHHHH CS
    Sugar_tr 426 avlfi 430
                 a+l++
  CTQ28136.1 437 ALLGM 441
                 55544 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1  13.4   1.1e-15   4.9e-12     137     392 ..     170     426 ..     161     447 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 1.1e-15
       MFS_2 137 svrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervem......rkkekteqke...klslleqlkevfrnraf 226
                 +v ++   +g +l  ++a+l+++ +g+ +s r  +l+++l+   Lm++ + ++++   +  +        ++ +t++ +   k++  + + +++rnr  
  CTQ28136.1 170 GVHHTGYPIGALLSGVVASLVLATFGE-GSWRYCFLLALLVAIPLMIFWAKYSTADRINTLYQhidsqgLTRPATQESShvaKGEGMKTFLRTLRNRNI 267
                 566777779999999999999999999.8888888888888888888888777665554443343333333445555551114455556667889**** PP

       MFS_2 227 lillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllvia 324
                  + +   ll++  ++  n  l  yl +v g + +a + +++++t+ ++lg ++w++l   +g+k+t +++ l + ++ +l++++  +n+  ++++++ +
  CTQ28136.1 268 SLTAGNTLLTQIVYMGINVVLPPYLYHVSGlSLAASAGLSIIFTLTGTLGQVIWPWLSDSFGRKRTLIVCGLWMSIGIALFYFA--TNMPRLIAIQLFF 364
                 ******************************8888888899999****************************************9..************* PP

       MFS_2 325 gfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsaf.gyrakasv 392
                 g+ + + + + ++m +d++++       r+++++ ++ +++  +++gi+ +++g+l+++  g + +a++
  CTQ28136.1 365 GLVANAVWPIYYAMASDSAEE-------RATSTANGIITTAMFIGGGISPLLMGWLIQFGgGWENPAGY 426
                 ******************997.......569999999999999****************9555666555 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   9.7   1.6e-05     0.071     179     375 ..     201     415 ..     175     421 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.6e-05
  MFS_1_like 179 ysallyvlaallvisllvvlilnetekesklkvtksl.........................qvllnilknpeviifllvalilgmswgiienFlflYL 252
                 y     ++++   + ++++l++   ++ +++ + +                           + +l++l+n+++ +    +l+ ++++  i+  l  YL
  CTQ28136.1 201 Y-----CFLLA--LLVAIPLMIFWAKYSTADRINTLYqhidsqgltrpatqesshvakgegmKTFLRTLRNRNISLTAGNTLLTQIVYMGINVVLPPYL 292
                 3.....22222..22223334444455555555543356778888999999999999999999999999999999999999999999999999999999 PP

  MFS_1_like 253 .kelgasnt.llGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleat 349
                  +  g s    +G  ++++  +++   ++  +l + +G  + li++ l + +   l  + +n+  ++ i+++ g+   ++w +    +s+ a +++ +t
  CTQ28136.1 293 yHVSGLSLAaSAGLSIIFTLTGTLGQ-VIWPWLSDSFGRKRTLIVCGLWMSIGIALFYFATNMPRLIAIQLFFGLVANAVWPIYYAMASDSAEERATST 390
                 55556554314555555555555554.667999999**9999999999999999999999999999********************************* PP

  MFS_1_like 350 gqgllsglyfglGralGsliGGllwd 375
                   g++++++f +G+++  l+ G l++
  CTQ28136.1 391 ANGIITTAMF-IGGGISPLLMGWLIQ 415
                 ****999988.677777777778877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 3449.28
//
Query:       CTQ28137.1  [L=292]
Description: putative gluconolactonase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-78  264.3   0.0    1.2e-78  264.1   0.0    1.0  1  SGL       SMP-30/Gluconolactonase/LRE-like region
  ------ inclusion threshold ------
      0.067   13.5   0.1        4.8    7.6   0.0    2.7  2  DUF5122   Domain of unknown function (DUF5122) beta-propeller


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.1   0.0   1.4e-82   1.2e-78       1     245 [.      13     256 ..      13     257 .. 0.98

  Alignments for each domain:
  == domain 1  score: 264.1 bits;  conditional E-value: 1.4e-82
         SGL   1 lgEGpvwdeeegaLlwvDilgqrihrldpatgketvldtpesvGaiaprkd.grlvvasksglalldlasgeletladeeedekpllrfNDgvvdpdGr 98 
                 lgE+pvwd e+++L+wvD l +r+++ ++++g+ +++d+ +++G++a+r++ ++ vva+++g++lld+asgel+ l ++e d+ p +r+NDg+vd++Gr
  CTQ28137.1  13 LGESPVWDVEQQRLWWVDSLDGRLFACNAQGGAIKSWDVRQKIGSFALRQNgEGAVVALQNGVHLLDFASGELTLLHHPEADR-PFNRLNDGKVDRQGR 110
                 79**********************************************77789**************************9888.*************** PP

         SGL  99 lwfGtmgdeeakgeevgalyrldpdgklervlddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkge.gepDGlavDaeGn 196
                 + fG+m+++e+++   galyrldpd +l+++++d+ ++N+ +wsp g+t+Y+aD++t++i a d+++ +g+ls  rvf ++++ e g+ DG++vD+eG+
  CTQ28137.1 111 FLFGSMDMREEEPS--GALYRLDPDLSLHVLKKDIIVSNAPCWSPSGETFYFADTWTGEICAWDYNTATGDLSGERVFCHVDRSEgGAADGATVDSEGY 207
                 **************..*******************************************************************99888*********** PP

         SGL 197 vwvAvwgggkvvrfdpdGklieeiklpakrvtscaFgGpdlrtLyitsa 245
                 +w+A++ +gk+vr++p+Gk+++ i++p+k+vts++FgG++l+ Ly+ts 
  CTQ28137.1 208 LWNALVYAGKLVRYTPEGKVDRIIEMPVKKVTSVMFGGENLDVLYVTSM 256
                 ***********************************************96 PP

>> DUF5122  Domain of unknown function (DUF5122) beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.013   1.2e+02      18      32 ..     122     136 ..     100     136 .. 0.72
   2 ?    7.6   0.0   0.00054       4.8      13      33 ..     209     228 ..     202     229 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.013
     DUF5122  18 ssdfalvRLnaDGsl 32 
                  ++ al RL++D sl
  CTQ28137.1 122 EPSGALYRLDPDLSL 136
                 567899******887 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00054
     DUF5122  13 tsyngssdfalvRLnaDGslD 33 
                 + ++ +++  lvR+++ G +D
  CTQ28137.1 209 W-NALVYAGKLVRYTPEGKVD 228
                 4.6778999**********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       227  (0.0126611); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2248.34
//
Query:       CTQ28138.1  [L=445]
Description: Major facilitator family transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-38  131.2  46.9    4.2e-38  131.2  46.9    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.066   11.8  17.2     0.0035   16.0   8.6    2.6  2  ATG22     Vacuole effluxer Atg22 like


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.2  46.9   4.6e-42   4.2e-38       1     353 []      29     392 ..      29     392 .. 0.85
   2 !    6.0  15.4   0.00053       4.8     214     297 ..     348     429 ..     341     438 .. 0.53

  Alignments for each domain:
  == domain 1  score: 131.2 bits;  conditional E-value: 4.6e-42
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l++a+++s+++r+++g+a   +++ d g+s++++gl ++l++l++av+ +p   + +r+G+rr++   ++++++ ++ ++f+++ + ++v+r+l G+++
  CTQ28138.1  29 LIVAYIISFIDRTNIGMAKA-TMSVDIGLSATAFGLGAGLFFLTYAVLEIPSNLFLTRIGARRWIARIMITWGILSCGMAFVTGPTSFYVMRLLLGAAE 126
                 5789****************.***************************************999777777777777577778766557************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee.... 188
                 ++l+p+++++++ wf +eer++a+gl+ +g+ l+ i+g++lggll+s+ g      W+++f+i ++ ++ ++ +++  lp++p + ++  + +      
  CTQ28138.1 127 AGLYPGIIYYLTLWFGREERAKATGLFLLGVCLANIIGAPLGGLLLSLDGmsgwhgWQWMFFIEGLPAIALAFVVWRRLPDKPADARWLDSDDAQaina 225
                 *******************************************9997777999999***************8877777777777777777666657777 PP

       MFS_1 189 ........kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlll 279
                          ++ p+ +   +k  l+ +v+++l+++ ++  f ++gl+++lp ++ +   l+  l++gll a++++++a++++l+ r+++    +r + +
  CTQ28138.1 226 vlakeaeeTRHTPSRF--SLKTALSTRVFLLLVLIYFTHQFSVYGLSYFLPGIIGSWGQLT-PLQIGLLTAIPWIAAAAGGILLPRFART--EQRSRSM 319
                 7777665333333333..467788888786677777777889999*******866666666.7*************************77..5667777 PP

       MFS_1 280 allllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                  +++ l++a g+a+ a + + v+ll ++ l+ f ++ +++++++++ + ++ ++ +  +gl n +g  gg+lgp
  CTQ28138.1 320 LMAGYLVMATGMAIGAIAGHGVALL-GFSLAAFMFFAMQSIIFNWLPSIMSGHMLAGSFGLLNCLGLCGGFLGP 392
                 7777777777777777775555555.788888888889************9999*********99999***998 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.00053
       MFS_1 214 ialllfffgfsglltllplylqevlgls...glllaglllallalvgailallagrlsdrlgrrrrll.lallllllaalglallavt 297
                 +a+++ff++ s+++ +lp++ ++ + l+   g ll+   l+l++ +  ++  ++g++ dr+g+ +  l +a++ll+++al  ++l  +
  CTQ28138.1 348 LAAFMFFAMQSIIFNWLPSI-MSGHMLAgsfG-LLNC--LGLCGGFLGPF--ILGAFEDRTGAATSGLwFAVALLIIGALVSLFLKSS 429
                 45555555555588888886.44444443555.5555..56666555555..888888887774444403444444444444444333 PP

>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.3      0.24   2.1e+03     355     371 ..      88     104 ..      31     130 .. 0.44
   2 ?   16.0   8.6   3.9e-07    0.0035     419     469 ..     377     427 ..     170     432 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.24
       ATG22 355 aiivlfeliplyGllGi 371
                 a   ++ ++  +G+l  
  CTQ28138.1  88 ARRWIARIMITWGILSC 104
                 22233334444444422 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 3.9e-07
       ATG22 419 FsLyaitdkgssvigplivglItDrtgnirsafvflavLlvvplpllllvd 469
                 F+L + ++ +++++gp+i+g+  Drtg + s+++f ++Ll+++  + l+++
  CTQ28138.1 377 FGLLNCLGLCGGFLGPFILGAFEDRTGAATSGLWFAVALLIIGALVSLFLK 427
                 9******************************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 3351.75
//
Query:       CTQ28139.1  [L=396]
Description: acetyl-CoA acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-80  269.9   0.1    2.9e-80  269.4   0.1    1.2  1  Thiolase_N       Thiolase, N-terminal domain
    6.4e-43  145.3   0.4    6.2e-42  142.1   0.2    2.4  2  Thiolase_C       Thiolase, C-terminal domain
    9.3e-05   22.1   4.2     0.0025   17.4   0.5    3.0  3  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
      0.014   15.6   0.1       0.41   10.9   0.0    2.9  3  HemY_N           HemY protein N-terminus
      0.017   15.0   0.8       0.59   10.0   0.1    2.7  3  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth
      0.064   13.3   0.2        9.7    6.2   0.0    3.8  3  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.4   0.1   9.7e-84   2.9e-80       1     259 [.       7     263 ..       7     264 .. 0.98

  Alignments for each domain:
  == domain 1  score: 269.4 bits;  conditional E-value: 9.7e-84
                 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsi 99 
                 +vivs++rt+ig+f+gslk +  ++L+a+++++++++ag++p+++de ivGnv q +e   iar  +l+agip+e +a  vn++c+Sgl+a+a+++ ++
  CTQ28139.1   7 IVIVSGVRTAIGTFNGSLKHTHQHDLGAAVIREAIARAGIAPQDIDETIVGNVGQIAESGFIARICQLRAGIPQESTAYSVNRQCGSGLQALADGMMQL 105
                 79************************************************************************************************* PP

                 HTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTBE CS
  Thiolase_N 100 aageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdeiv 198
                 ++g+a+vvva+G+E+m++ p++ + ++r+g+++g+ +++d li   l+     +h G+taen+a++++i+Re+ d fA +s+qka +a+++g+F+++i+
  CTQ28139.1 106 QSGQAEVVVACGTENMTQLPYYLR-KARDGYRMGHGELEDGLISI-LTWPEGPYHNGITAENVAQRFGITREAMDDFAWSSQQKALKAIAEGRFREQIL 202
                 ***********************8.9****************999.999999*********************************************** PP

                 -EEEEESSSE.EEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 199 Pvkvkgkkgk.ktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmse 259
                  ++v++ k+    + +de++r  +  ekLa+l+paFk +G vtA+n+s+i+DGaaa+++m++
  CTQ28139.1 203 ALEVPDGKKAtRLFATDEHPRD-TPREKLATLRPAFKADGVVTAANSSGINDGAAALVMMTR 263
                 ******999989*********9.9************************************97 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.17   5.1e+02      26      43 ..      35      52 ..      23      57 .. 0.88
   2 !  142.1   0.2   2.1e-45   6.2e-42       2     123 .]     272     393 ..     271     393 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.17
                HHHHHHHHHHT--GGGES CS
  Thiolase_C 26 yaikkvlkkagltvedid 43
                 +i++++ +ag+  +did
  CTQ28139.1 35 AVIREAIARAGIAPQDID 52
                67999************9 PP

  == domain 2  score: 142.1 bits;  conditional E-value: 2.1e-45
                 --SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHC CS
  Thiolase_C   2 kplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkke 100
                 +p  +ir +a++g+ +ei+g+gP +a+++++++  ++v++idl+E+nEAFaaqaLav+++l ld+ +vNvnGGaialGHP+GasGa + v+l++e+ ++
  CTQ28139.1 272 TPRMRIRGWAVAGCGAEIMGFGPSPATRRLMDRLNIDVQSIDLIELNEAFAAQALAVMNDLRLDPARVNVNGGAIALGHPVGASGAILPVKLMYEMARS 370
                 78899********************************************************************************************** PP

                 TTSEEEEEEEETTTEEEEEEEEE CS
  Thiolase_C 101 ggklgvaalCigggqgvalviek 123
                 g+++g++++Cigggqg+++++e+
  CTQ28139.1 371 GARTGLVTMCIGGGQGISMLFER 393
                 ********************985 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0054        16      87     117 ..      28      58 ..      18      67 .. 0.87
   2 !   17.4   0.5   8.5e-07    0.0025     168     206 ..      84     122 ..      65     133 .. 0.88
   3 ?   -2.9   0.1       1.3     4e+03     171     249 ..     243     262 ..     239     267 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0054
                    HHHHHHHHHHHHHHHHHTS-HHTCTTGGEEE CS
  ketoacyl-synt  87 pqqrllleaawealedagltpeeldgsrvgv 117
                     q+ l   + +ea+++ag+ p+++d++ vg+
     CTQ28139.1  28 HQHDLGAAVIREAIARAGIAPQDIDETIVGN 58 
                    68889999****************9988775 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 8.5e-07
                    EEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE--- CS
  ketoacyl-synt 168 svtvdtACsSslvavhaavqslrsgeadvalaGGvelll 206
                    +++v   C S+l a++  +++l+sg+a+v++a+G+e ++
     CTQ28139.1  84 AYSVNRQCGSGLQALADGMMQLQSGQAEVVVACGTENMT 122
                    6788889****************************9665 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.3
                    EESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEE CS
  ketoacyl-synt 171 vdtACsSslvavhaavqslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkr 249
                    v++A sS+   ++aa                                                           +v+++
     CTQ28139.1 243 VTAANSSGINDGAAA-----------------------------------------------------------LVMMT 262
                    556666665444444...........................................................44333 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014      0.41      32      76 ..      67     111 ..      55     115 .. 0.89
   2 ?   -0.7   0.0      0.55   1.6e+03      52      70 ..     131     149 ..     119     151 .. 0.77
   3 ?    0.3   0.0      0.27   8.2e+02      63      76 ..     185     198 ..     170     233 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
      HemY_N  32 lllrllrlllrlparvrrwrrrrrerkarealseGlialaeGdfa 76 
                 ++ r+++l  ++p+ + +++ +r+   + +al +G+++l++G+++
  CTQ28139.1  67 FIARICQLRAGIPQESTAYSVNRQCGSGLQALADGMMQLQSGQAE 111
                 566788888889******************************875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.55
      HemY_N  52 rrrrerkarealseGlial 70 
                 +r   r ++  l++Gli++
  CTQ28139.1 131 ARDGYRMGHGELEDGLISI 149
                 46778999********986 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.27
      HemY_N  63 lseGlialaeGdfa 76 
                  +++l a+aeG+f+
  CTQ28139.1 185 QQKALKAIAEGRFR 198
                 56777777887776 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1    0.0002      0.59       3      39 ..      87     123 ..      85     131 .. 0.93
   2 ?    2.3   0.0     0.049   1.5e+02      53      68 ..     252     267 ..     245     278 .. 0.77
   3 ?   -2.9   0.0       2.1   6.2e+03       8      31 ..     355     377 ..     353     380 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0002
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlsk 39 
                  +n +C + ++al+     ++sg+a+ v+ +g+e++++
   CTQ28139.1  87 VNRQCGSGLQALADGMMQLQSGQAEVVVACGTENMTQ 123
                  7899******************************987 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.049
                  -EEEEEEEEEEESSSS CS
  ACP_syn_III  53 GDGAgAvvleaseeeg 68 
                   DGA+A+v+ + ++ +
   CTQ28139.1 252 NDGAAALVMMTRQQAE 267
                  6*******98875444 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.1
                  GHHHHHHHHHHHHHHTTS-SEEEE CS
  ACP_syn_III   8 sgfvyalsvAdaliesgaakrvLv 31 
                  sg++  ++++ ++ +sg a++ Lv
   CTQ28139.1 355 SGAILPVKLMYEMARSG-ARTGLV 377
                  78888889999999999.777777 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0033       9.7      23      45 ..      29      52 ..       8      56 .. 0.73
   2 ?   -0.4   0.0      0.36   1.1e+03      13      37 ..     155     180 ..     145     186 .. 0.84
   3 ?    1.6   0.1      0.09   2.7e+02      86     105 ..     347     366 ..     277     371 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0033
                     HHHH.HHHHHHHHHHHT--GGGEE CS
  Ketoacyl-synt_C 23 geaq.araiekalaeagvdpedvd 45
                     ++ + a++i++a+a+ag++p+d+d
       CTQ28139.1 29 QHDLgAAVIREAIARAGIAPQDID 52
                     33332678**************98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.36
                      -.STSSSTSTTHHHHHHHHHHHHHHH CS
  Ketoacyl-synt_C  13 g.ahnsltapngeaqaraiekalaea 37 
                      g +hn++ta+n ++   + ++a+++ 
       CTQ28139.1 155 GpYHNGITAENVAQRFGITREAMDDF 180
                      679*********99999999998876 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.09
                      HH-B-GGGHHHHHHHHHHHH CS
  Ketoacyl-synt_C  86 niGHleaAaGvaelikvvla 105
                       +GH  +A+G++  +k++  
       CTQ28139.1 347 ALGHPVGASGAILPVKLMYE 366
                      57888888888777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3013.01
//
Query:       CTQ28140.1  [L=244]
Description: 3-oxoacyl-(acyl-carrier-protein) reductase FabG [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-68  229.2   6.0    5.6e-68  229.0   6.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    1.1e-62  211.0   2.4    1.4e-62  210.7   2.4    1.1  1  adh_short     short chain dehydrogenase
    2.3e-19   70.0   2.3    3.8e-19   69.3   2.3    1.3  1  KR            KR domain
    2.9e-05   23.6   0.8    5.4e-05   22.8   0.2    1.9  2  Epimerase     NAD dependent epimerase/dehydratase family
     0.0013   18.3   0.7      0.034   13.7   0.5    2.2  2  NmrA          NmrA-like family
     0.0076   16.2   2.5       0.11   12.5   1.8    2.6  2  ADH_zinc_N    Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.015   15.4   0.2      0.031   14.3   0.2    1.5  1  B12-binding   B12 binding domain
      0.039   13.3   1.1      0.045   13.1   0.2    1.6  2  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
      0.067   13.1   0.2       0.12   12.2   0.2    1.5  1  3HCDH_N       3-hydroxyacyl-CoA dehydrogenase, NAD binding do


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.0   6.0   2.8e-71   5.6e-68       1     233 [.      12     242 ..      12     243 .. 0.95

  Alignments for each domain:
  == domain 1  score: 229.0 bits;  conditional E-value: 2.8e-71
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   Gaa+gIG++iA+ la+eGa+v+++d++  +++++++l e++ ++ ++ c++++++qveal+++++e fg +Dilvnnagi ++  + +++++++++d
    CTQ28140.1  12 GAARGIGFGIAQVLAREGARVIIADRDAHGEAAAASLRESGAQAlFISCNIAEKTQVEALFSQAEEAFGPVDILVNNAGINRD--AMLHKLTEADWD 106
                   9*****************************8888888887776655*************************************..************ PP

                   HHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdellee 191
                   +++dvnl+++fl++++a+  m+e+  g+i+n++s +   +  +++ y+a+Ka+++++t+++++el++kg++vNa++pg+i+T++++g++  +++ + 
    CTQ28140.1 107 TVIDVNLKGTFLCMQQAAIRMRERgaGRIINIASAS-WLGNVGQTNYSASKAGVVGMTKTACRELAKKGVTVNAICPGFIDTDMTRGVP--ENVWQI 200
                   **************999997766659********95.577777889******************************************9..99**** PP

                   HHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 192 learaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   + +++p g +g++++v+e+++fLasd a+yi+G+++ v gG+
    CTQ28140.1 201 MISKIPAGYAGEAKDVGECVAFLASDGARYINGEVINVGGGM 242
                   *****************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.7   2.4   6.8e-66   1.4e-62       1     192 [.       6     195 ..       6     198 .. 0.97

  Alignments for each domain:
  == domain 1  score: 210.7 bits;  conditional E-value: 6.8e-66
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 k+++vtGa++GIG  ia+ la+eGa+v+++dr  +  e++a++l+e ga+al+i+++++++++veal+++a++ +g++d+LvnNAGi+++++ ++l+e+
  CTQ28140.1   6 KTAIVTGAARGIGFGIAQVLAREGARVIIADRD-AHGEAAAASLRESGAQALFISCNIAEKTQVEALFSQAEEAFGPVDILVNNAGINRDAMLHKLTEA 103
                 79***************************9998.6689************************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                 +w+ vi+vNl+g+fl++++++  m ++ +GrI+n++S     ++ g++ YsAsKa+v+g+t+++ +ela++g++vna++PG++dTdm++ + e
  CTQ28140.1 104 DWDTVIDVNLKGTFLCMQQAAIRMRERGAGRIINIASAS-WLGNVGQTNYSASKAGVVGMTKTACRELAKKGVTVNAICPGFIDTDMTRGVPE 195
                 *************************************65.599********************************************998765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   2.3   1.9e-22   3.8e-19       3     154 ..       8     157 ..       6     181 .. 0.84

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 1.9e-22
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                  ++tG++ g+G  +a+ la++gar ++   R+a    + +a  a+l+++ga+  ++++ +++k++veal++++++ ++p+   ++ Ag+ rd++l ++t
  CTQ28140.1   8 AIVTGAARGIGFGIAQVLAREGARVII-ADRDA----HGEAAAASLRESGAQALFISCNIAEKTQVEALFSQAEEAFGPVDILVNNAGINRDAMLHKLT 101
                 69*********************9665.56773....34456789****************************************************** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNa 154
                 ++d+++v+   +kG+    +  +     +    ++ ++S+ + lg+ gq+nY+a  a
  CTQ28140.1 102 EADWDTVIDVNLKGTFLCMQQAAIrmreRGAGRIINIASA-SWLGNVGQTNYSASKA 157
                 **************98766544322444677788888885.679*********9876 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.2   2.7e-08   5.4e-05       2     124 ..       9     149 ..       8     205 .. 0.79
   2 ?   -2.1   0.0       1.1   2.1e+03     215     241 .]     213     239 ..     211     239 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.7e-08
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHHHHT.....-SEEEE--S.---HHH...HHHSHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.....elveldltdrsalerlfkeeq.....pdavihlAa.vggvaa...ssedpad 86 
                 +VtGa+  iG  +++ l+++g +vi  dr+ ++++ a+  +       ++ +++ +++++e+lf++ +     +d+ ++ A+   + +    +  d   
  CTQ28140.1   9 IVTGAARGIGFGIAQVLAREGARVIIADRDAHGEAAAASLREsgaqaLFISCNIAEKTQVEALFSQAEeafgpVDILVNNAGiNRDAMLhklTEADWDT 107
                 8*****************************77777665554489999*****************97533344478888888855554441113444456 PP

                 HHHHHTHHHHHHHHHHH....HHTCTEEEEEEEGGGGTSCSS CS
   Epimerase  87 fieknlqgtlnlleaar....kagvkrllflsSsevYGkdae 124
                 +i+ nl+gt   ++ a     ++g+ r++++ S+++ G++ +
  CTQ28140.1 108 VIDVNLKGTFLCMQQAAirmrERGAGRIINIASASWLGNVGQ 149
                 788888888766665543333667889999999999888776 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 215 veDvaeaillvlehvdagdkgeiyniG 241
                 ++Dv e++ +++   ++  +ge++n+G
  CTQ28140.1 213 AKDVGECVAFLASDGARYINGEVINVG 239
                 689999999999998888889999998 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.5   1.7e-05     0.034       2      69 ..       9      79 ..       8      93 .. 0.88
   2 ?    2.5   0.0     0.045        89     181     210 ..     211     241 ..     184     243 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
                EESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SH.HHHHHHHSTTEEE..ES-TT-HHHHHHHHTT-SEEE CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRdtkse.lakslkeaGvelv..kgdlddkeslvealkgvdvvf 69
                +v+Ga+  +G  ++++l+++g +v +  Rd ++e +a+sl e+G++ +  + ++ +k  +++++++++ +f
  CTQ28140.1  9 IVTGAARGIGFGIAQVLAREGARVIIADRDAHGEaAAASLRESGAQALfiSCNIAEKTQVEALFSQAEEAF 79
                5999999************************76615789******9875577888************9888 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.045
                 -HHHHHHHHHHHHHHHHHHH.TTEEEEE-SE CS
        NmrA 181 daeeDiGafvikilkdprkl.kgkriklagn 210
                 ++ +D+G+ v+ +++d + + +g++i++ g 
  CTQ28140.1 211 GEAKDVGECVAFLASDGARYiNGEVINVGGG 241
                 6899************77777****998766 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   1.8   5.5e-05      0.11       1      64 [.      16     110 ..      16     156 .. 0.68
   2 ?   -1.6   0.0       1.2   2.4e+03      46      61 ..     163     177 ..     118     189 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.5e-05
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT...TESEEEET............................TTC.HHHHHHHHHTTTSSEEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakkl...Gadeviny............................kea.dlverikeltggegvdvvfe 64 
                 g+G    q+++  Ga+vi +d++++  + a++l   Ga +++ +                            +   + ++++++lt + + d v++
  CTQ28140.1  16 GIGFGIAQVLAREGARVIIADRDAHGEAAAASLresGAQALFIScniaektqvealfsqaeeafgpvdilvnNAGiNRDAMLHKLT-EADWDTVID 110
                 899*********************97766666667766666666555554333222222322222233333223345666666666.456666666 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
                 HHHHHHHHTTTSSEEE CS
  ADH_zinc_N  46 lverikeltggegvdv 61 
                  + +++el  ++gv v
  CTQ28140.1 163 TKTACRELA-KKGVTV 177
                 233444444.345544 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   1.6e-05     0.031      20      87 ..      21      87 ..      14     108 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
  B12-binding 20 laaalrdagfeVqllganvenedivaairaekpdvvglSalltsqleavkelvellkrirprvkvvvG 87
                 +a++l ++g +V++ + +++ e+ +a++r+  ++++ +S+   ++ ++v++l  +++++   v ++v 
   CTQ28140.1 21 IAQVLAREGARVIIADRDAHGEAAAASLRESGAQALFISC-NIAEKTQVEALFSQAEEAFGPVDILVN 87
                 899*************************************.999999999999888887777777665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   2.3e-05     0.045      34     127 ..       3      89 ..       1     112 [. 0.81
   2 ?   -2.4   0.1       1.3   2.6e+03      29      46 ..     147     164 ..     133     177 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.3e-05
                   GTTSEEEEES-SH.HHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS CS
  2-Hacid_dh_C  34 lsgktvGiiGlGr.IGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltpetrhlinaeelakmkkgailiNta 127
                   l+ kt  + G+ r IG  +a++l+  g++vi+ dr  + e+         +sl e  a++ ++s+++  + + + l++++e +++ +  il+N a
    CTQ28140.1   3 LASKTAIVTGAARgIGFGIAQVLAREGARVIIADRDAHGEA-------AAASLRESGAQALFISCNIAEKTQVEALFSQAE-EAFGPVDILVNNA 89 
                   77899999999877**********************77333.......4579********************999999887.6677777777765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
                   GSBS-GTTSEEEEES-SH CS
  2-Hacid_dh_C  29 llgkelsgktvGiiGlGr 46 
                   + +++ s ++ G++G+ +
    CTQ28140.1 147 VGQTNYSASKAGVVGMTK 164
                   445567778888888765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   6.2e-05      0.12      10      46 ..      17      53 ..       7      97 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.2e-05
                CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHH CS
     3HCDH_N 10 mGagiaavfasagleVvlvdiseealekalekieksl 46
                +G gia+v+a++g +V + d++++  ++a++  e+  
  CTQ28140.1 17 IGFGIAQVLAREGARVIIADRDAHGEAAAASLRESGA 53
                899*****************98765555544444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1809.34
//
Query:       CTQ28141.1  [L=530]
Description: Acetate CoA-transferase YdiF [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-32  111.7   2.2    4.4e-28   98.2   0.0    2.7  2  CoA_trans        Coenzyme A transferase
     0.0014   18.6   0.2        1.5    8.8   0.0    3.2  3  AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal 
  ------ inclusion threshold ------
      0.019   13.3   0.0      0.031   12.6   0.0    1.2  1  Mal_decarbox_Al  Malonate decarboxylase, alpha subunit, trans


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0   7.4e-32   4.4e-28       4     216 ..       8     242 ..       5     243 .. 0.91
   2 !   11.3   1.2   2.7e-05      0.16      10     123 ..     290     387 ..     284     410 .. 0.72

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 7.4e-32
                 HHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHT.....TTSEEEEESTTTE...ECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEE CS
   CoA_trans   4 aaeavakeikdGmtvavGGFgligiPealiaalarsg.....vkdltviiseagv...lglgplllngsvkkviasyggetvnprfgkqflsgelefel 94 
                 a ea++  + +G+tv+  G +lig +e++  a+  ++      +dlt ++ ++     +g++  + +g v + i s++g    pr  + + ++e+e+  
  CTQ28141.1   8 AHEAAR-WVASGDTVCTVGMTLIGAAESILSAIEARFltagePRDLTLLHAAGQSdrqRGIQHFAHPGMVTRLIGSHWGL--APRWMAMINNNEVEAWC 103
                 567777.9******************9999999888888887778877777776699***********************..8999999899******* PP

                 HHHHHHHHHHHHHHHTEETTEEEESTTTTSHGGTT...............ESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHSHH CS
   CoA_trans  95 lpqgtlaerlraGgaglpelgfltntgigtlvapk...............lkkvpgfgGaeyilepalkadvalikaskadeegnlvfeksagnfnkpa 178
                 lpqg ++    a +aglp  g l+++g+gt+v+p+               l++  +f G ey+ +pal  dv++++ ++ade+gnl+ + ++++++   
  CTQ28141.1 104 LPQGQIVHLYSAMAAGLP--GRLSPVGLGTFVDPRieggrmnartrerpnLIEHVTFRGDEYLFYPALPLDVVIVRGTHADEDGNLTTDEEVMKLE-VL 199
                 ******************..******************************99********************************************.77 PP

                 HHH.HEEEEEEEEEEEE....CTTSSECCCESBTGGGHSEEEE CS
   CoA_trans 179 iae.aakvtileveeiv....ekgkldpekvliPgvlvdavve 216
                 +a  aa++  + v+  v     kg+l+p+++++Pg l+da+v+
  CTQ28141.1 200 HAVlAARRYGAKVLAQVkyrvAKGSLHPKSITVPGNLIDAIVV 242
                 777756655555555555555********************96 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 2.7e-05
                 TT--TTEEEEE-SBTTBTHHHHHHHHHHHHT.TTSEEEEESTTTEECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHHHHHHHHHHH CS
   CoA_trans  10 keikdGmtvavGGFgligiPealiaalarsg.vkdltviiseagvlglgplllngsvkkviasyggetvnprfgkqflsgelefellpqgtlaerlraG 107
                 +++  G ++++G    +giP+  i a++      ++++i+ e+g+ g +   ++g v+  i      +++ ++++q      ++ l+ +g  +++++ G
  CTQ28141.1 290 RYLTPGCVINLG----TGIPNDVIGAIIHEEqLGEQVTITVESGIYGGQ---QAGGVDFGIG----RNLSAMISHQ-----DQM-LYYNGAGVDITFMG 371
                 499*********....************99879************5543...3344443333....5477777777.....444.47788888888888 PP

                 HHTEETTEEEESTTTT CS
   CoA_trans 108 gaglpelgfltntgig 123
                 + +++++g ++ t +g
  CTQ28141.1 372 AGEMDPHGHVNATRLG 387
                 8888888888888888 PP

>> AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.011        68       8      42 ..       4      38 ..       1      44 [. 0.88
   2 ?    2.6   0.0     0.019   1.2e+02     119     142 ..     162     188 ..     150     218 .. 0.88
   3 !    8.8   0.0   0.00025       1.5     110     143 ..     350     383 ..     334     406 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.011
  AcetylCoA_hydro  8 klkepeeaaelvkngshielsgftavgtakaipky 42
                     k ++++eaa  v +g+ +   g+t +g+a  i  +
       CTQ28141.1  4 KFIDAHEAARWVASGDTVCTVGMTLIGAAESILSA 38
                     7789************************9887666 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.019
  AcetylCoA_hydro 119 ekgfvp...iDvalieataldedGyln 142
                      e+ f+p   +Dv ++  t  dedG l+
       CTQ28141.1 162 EYLFYPalpLDVVIVRGTHADEDGNLT 188
                      567888888***************887 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00025
  AcetylCoA_hydro 110 hlsevpqklekgfvpiDvalieataldedGylnl 143
                      ++s+  q+l ++  ++D++++ a  +d++G++n 
       CTQ28141.1 350 MISHQDQMLYYNGAGVDITFMGAGEMDPHGHVNA 383
                      566667888888899****************995 PP

>> Mal_decarbox_Al  Malonate decarboxylase, alpha subunit, transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.1e-06     0.031     139     225 ..     172     267 ..     163     273 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.1e-06
  Mal_decarbox_Al 139 nvalvaaekadreGnlytGantedtPai..veatafkdgiviaqvneivd....klprvdiPadwvdfvveadkpfa...ieplftrdPakite 223
                      +v++v +++ad++Gnl t  +  +  ++  v a+    + v+aqv+  v     + + + +P++ +d++v +++p +     + ++ dPa   +
       CTQ28141.1 172 DVVIVRGTHADEDGNLTTDEEVMKLEVLhaVLAARRYGAKVLAQVKYRVAkgslHPKSITVPGNLIDAIVVCEEPQTdhrQTSSWAFDPALCGD 265
                      799***************99876655542255666667889*****9998453334579************99996511133445556666665 PP

  Mal_decarbox_Al 224 vq 225
                      +q
       CTQ28141.1 266 IQ 267
                      55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 4212.59
//
Query:       CTQ28142.1  [L=518]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-80  268.2   0.0    1.1e-79  268.0   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    7.5e-17   62.1   0.0    1.6e-16   61.0   0.0    1.6  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.0   0.0   1.3e-83   1.1e-79       3     422 ..      17     411 ..      15     412 .. 0.86

  Alignments for each domain:
  == domain 1  score: 268.0 bits;  conditional E-value: 1.3e-83
                  HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHH.HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE CS
  AMP-binding   3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLr.slGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli 99 
                  ++aa+ pd+ al +  e++++ Yr+++ rv+r+ a L     ++kgdr++++  n p +  +l+a+l +G+ vvp +++l+++e + ++ +  ++v++
   CTQ28142.1  17 HSAARSPDALALAF--EDRRYLYRDFHLRVQRAMAQLDrGWSLRKGDRILLAWGNHPAFCEVLFAALGLGIEVVPFSTKLKQAESEALVGHIAPRVVL 112
                  7899********99..**********************77788******************************************************* PP

                  ETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCS CS
  AMP-binding 100 atvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrf 197
                     d++     +++ ++ ++ ++ + l++++         + +++      +++++++ dd+a++++TSGTTG+PKG++++h+nl++++ ++  ++  
   CTQ28142.1 113 --FDATV----QDWLKNTPDARA-VSLSEWQ-------ALCLPEP-L---TRPPVPVNRDDTAVMMFTSGTTGEPKGAIITHNNLLCAIDAY--TQKL 190
                  ..54333....333333222222.2233222.......2222222.2...3356789*******************************9996..5567 PP

                  CCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-E CS
  AMP-binding 198 klkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggepl 295
                  +l++ d  +  +p++hi+gl++ l l+++ Ga++ l ++++a++   ++ ++++ ++t+++g P+++  l ++ +++   + +d+++lr++ +g++ l
   CTQ28142.1 191 NLTAADSTILAVPIYHITGLSALLALFISLGASIWLQHRFNAPQ---VITTLREQNITFLHGSPTIFILLCQAAREQSVNHPSDFPALRTIACGAGHL 285
                  78899***************999999**********99998844...579********************9954455345556*************** PP

                  BHHHHHHHHHHHTC.EEEEEEEEGGGSSECEE....CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHH CS
  AMP-binding 296 spellrffralfge.evlegYGlTEttgvvtv....lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataea 388
                  s  l+++++ lf++ ++  +YGlTEtt  +t+    ++ ++   k gs G+++pg  + i ++  ++p+p g+ G ++++g  v + Y+++ ++ + +
   CTQ28142.1 286 SDGLIKELKTLFPHtAIQPIYGLTETTSPATIfpgdVWGSD---KCGSSGQAIPGLAITIRNDR-QQPLPAGQIGHIWLKGDVVIREYWQH-SERRPS 378
                  **************99**************98876555444...589***************98.************************98.555666 PP

                  EEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 389 fdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                   d++ +w+ TGDlg+ld++G l+i +R+kd+i++
   CTQ28142.1 379 CDAQ-GWFCTGDLGYLDDEGWLYIKDRSKDMINR 411
                  6645.7***********9**************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   1.8e-20   1.6e-16       1      76 []     420     495 ..     420     495 .. 0.95

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 1.8e-20
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE----.--HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgs.ealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+E++l++  +V+e+aV+  p +v Ge +vaf+v+ dg+  ++ ee+ ++++ +++ ++ p +++f+ +lp+t +GK
     CTQ28142.1 420 ELENILSTYRGVREVAVIPTPSPVYGEEPVAFIVP-DGQhHLTSEEILDWLKVKIARFKLPARIIFTRALPRTHNGK 495
                    89*********************************.57635599********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3750.81
//
Query:       CTQ28143.1  [L=320]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-37  126.7   0.0      2e-36  125.3   0.0    1.6  2  LysR_substrate  LysR substrate binding domain
    1.4e-16   60.2   1.1    2.3e-16   59.5   1.1    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.028   14.3   0.1       0.06   13.2   0.1    1.5  1  MarR_2          MarR family
      0.083   13.0   2.5       0.78    9.9   0.0    2.9  3  HTH_28          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.22   9.7e+02      90     141 ..      34      84 ..      15      93 .. 0.59
   2 !  125.3   0.0   4.5e-40     2e-36       3     208 ..      93     301 ..      91     302 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.22
                     GGGSSSE.CGGGGCTSEEEEESTTSTHHHHHHHHHHCT.TEECEEEEEESSHHH CS
  LysR_substrate  90 Largepv.sledLadeplilleegsglrdlledalrea.glkprvalevnslea 141
                      a g+ v sle++ ++pl +    s +r++++ + + a +  p++++ + sl+ 
      CTQ28143.1  34 AAVGQLVrSLEEVIGFPLFH---RSNNRRAALVLTEPAlRALPDIRMGFQSLNL 84 
                     44566666888888888888...4444444444444442333455555555555 PP

  == domain 2  score: 125.3 bits;  conditional E-value: 4.5e-40
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE. CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv. 96 
                        g L+++++p++a+ +l p++++f+ + P+++++l+++    l d  a+g +D++ir+g  +++gl a+ L++e++++v++p+  +     + 
      CTQ28143.1  93 ATNGILNVTVSPAFAAKWLLPRIEDFQHKWPDIDVRLETSL--KLMDFTAQG-MDVGIRYGLGQWEGLKAECLMSEEVFPVCAPSL-ISVNPAIn 183
                     56899************************************..*********.********************************6.44466666 PP

                     CGGGGCTSEEEEE.STTST.....HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESST..TCEEEE CS
  LysR_substrate  97 sledLadeplill.eegsg.....lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpep..plprel 183
                      l  + +++li+  + +       ++d++++ +  + +++++al++n+ +a+l+++  G Gial+ + +v+d++++grl+ + +p+   + p  +
      CTQ28143.1 184 CLTGVTEQTLIHDlSME-QhkdfiTWDRWLRRFNVQSIARKPALRINNSAAVLQAAIDGHGIALARSIMVDDDIKSGRLI-RLCPDVslTSPLSY 276
                     77777777777753222.2354557777777777778888****************************************.*****9766669** PP

                     EEEEETTCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 184 ylvyrkgrelspavrafidflreal 208
                     ylvyr+g    p+++ f++++ e++
      CTQ28143.1 277 YLVYRPGCDSLPKIANFRAWIIEQA 301
                     *********************9986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   1.1   5.1e-20   2.3e-16       1      58 [.       7      67 ..       7      69 .. 0.94

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 5.1e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSE...EEE-HH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrg...lrLTea 58
                l++lr+f+a a+++sf+ AAeeL+++++av + +++LEe +g pLf+R++++   l+LTe 
  CTQ28143.1  7 LNALRAFEASARHQSFSLAAEELNVTPAAVGQLVRSLEEVIGFPLFHRSNNRraaLVLTEP 67
                789*********************************************88756899***96 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.3e-05      0.06       4      47 ..       3      45 ..       1      45 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
                -HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2  4 tpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLva 47
                tp ++ +L a  ++ +   + +  a++l+++++av ++++ L++
  CTQ28143.1  3 TPVHLNALRAFEASARH-QSFSLAAEELNVTPAAVGQLVRSLEE 45
                67788888888888865.59*********************986 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00017      0.78       4      41 ..      11      49 ..      10      60 .. 0.84
   2 ?    1.3   0.1     0.086   3.9e+02      31      41 ..     210     220 ..     207     224 .. 0.80
   3 ?   -0.8   0.1      0.39   1.7e+03       4      16 ..     233     245 ..     232     250 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00017
      HTH_28  4 eiikllaaGhsvreaArelgisrrtvyrWikryee.gGi 41
                ++ ++ a++ s + aA+el++++  v ++++ +ee +G+
  CTQ28143.1 11 RAFEASARHQSFSLAAEELNVTPAAVGQLVRSLEEvIGF 49
                5667778888*********************99997776 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.086
      HTH_28  31 rWikryeegGi 41 
                 rW++r++ + i
  CTQ28143.1 210 RWLRRFNVQSI 220
                 9*****97665 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.39
      HTH_28   4 eiikllaaGhsvr 16 
                  +++++++Gh ++
  CTQ28143.1 233 AVLQAAIDGHGIA 245
                 6889999***887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2371.44
//
Query:       CTQ28144.1  [L=93]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 755.87
//
Query:       CTQ28145.1  [L=113]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-20   71.0   3.1    8.9e-20   70.5   3.1    1.2  1  CMD       Carboxymuconolactone decarboxylase family
  ------ inclusion threshold ------
      0.033   14.0   0.1      0.065   13.1   0.1    1.5  1  HTH_23    Homeodomain-like domain


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   3.1     1e-23   8.9e-20       1      84 [.      24     106 ..      24     107 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 1e-23
                 HHHHHHHHHHHHHHCCGSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHH CS
         CMD   1 pellraltalreallareggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaae 84 
                 p++++ + ++ +a++   g+Ld+k+ eLialav+++++c+ C+++H++aA ++G+t+eeiae+l +a     ++a+++  +a++
  CTQ28145.1  24 PDVMQGIDKMQNAAVV-TGHLDAKTHELIALAVAVTTRCDGCLSVHAEAAAKQGATREEIAEALGVAITLNTGAALVYSSRALD 106
                 89*************9.9********************************************************9999999986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   7.2e-06     0.065      13      29 ..      72      88 ..      68      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.2e-06
      HTH_23 13 llaeGlsvreIAreLgv 29
                ++++G++++eIA++Lgv
  CTQ28145.1 72 AAKQGATREEIAEALGV 88
                4567************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 975.34
//
Query:       CTQ28146.1  [L=224]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-45  153.1   0.0    9.4e-37  124.8   0.0    2.1  2  Cupin_7     ChrR Cupin-like domain
    0.00016   21.3   3.4    0.00099   18.8   1.5    2.8  2  Cupin_2     Cupin domain
     0.0017   18.3   0.0     0.0026   17.6   0.0    1.3  1  DUF4863     Domain of unknown function (DUF4863)
     0.0028   16.8   0.1      0.098   11.8   0.0    2.1  2  DUF4437     Domain of unknown function (DUF4437)
     0.0045   16.7   0.2     0.0085   15.7   0.2    1.4  1  DMSP_lyase  Dimethlysulfonioproprionate lyase


Domain annotation for each model (and alignments):
>> Cupin_7  ChrR Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.0   2.6e-40   9.4e-37       2      90 ..      20     108 ..      19     109 .. 0.99
   2 !   26.4   0.0   1.3e-09   4.7e-06       2      74 ..     129     196 ..     128     206 .. 0.92

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 2.6e-40
                 -EE-SSTTEEEEEEEEESSSS-EEEEEEEE-TTEE---EE-TT-EEEEEEEEEEEETTEEEETTEEEEE-TT-EE--EESS-EEEEEEE CS
     Cupin_7   2 WvpspaegvevkpLerdgeekaratslvryapgsafsahkHpggeeilVLeGvfsdeegdypaGsylrnppgsshapvseeGctifvkl 90 
                 Wv+sp++g+++ +L+r+g+e+aratslvry p+++f++h+HpggeeilVLeG+fs+ ++dypaG+ylrnppgssh+p+s++G+++fvkl
  CTQ28146.1  20 WVHSPQTGIDRVMLDRIGGEQARATSLVRYLPQTSFPEHQHPGGEEILVLEGQFSEGNRDYPAGWYLRNPPGSSHQPHSNKGTQLFVKL 108
                 ****************************************************************************************8 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 1.3e-09
                 -EE-SSTTEEEEEEEEESSSS-EEEEEEEE-TTEE---EE-TT-EEEEEEEEEEEETTEEEETTEEEEE-TT- CS
     Cupin_7   2 WvpspaegvevkpLerdgeekaratslvryapgsafsahkHpggeeilVLeGvfsdeegdypaGsylrnppgs 74 
                 W +   +g++++pL +  ee    + l+r++ gs + a + +gg e l++eG++ + +  +++Gs++r p g 
  CTQ28146.1 129 WRE--DGGMSICPLFESAEE---RVCLLRMDSGSLLVAPSLKGGAELLIVEGNLIEGNSIHAKGSWIRIPSGH 196
                 555..689999***988888...9********************************************99875 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.5   2.8e-07   0.00099       2      57 ..      46      96 ..      45     108 .. 0.74
   2 ?   -1.0   0.0       0.4   1.4e+03      43      58 ..     186     201 ..     165     219 .. 0.57

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.8e-07
                EEEEETTEEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEE CS
     Cupin_2  2 lvelppGesapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrf 57
                lv++ p++s+p+h Hpg  e + VleG++    +    ++ aG ++  p+g  H+ 
  CTQ28146.1 46 LVRYLPQTSFPEHQHPGG-EEILVLEGQFS--EG--NRDYPAGWYLRNPPGSSHQP 96
                7899**************.********964..22..24556666666666666666 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.4
                 TTEEEEE-TT-EEEEE CS
     Cupin_2  43 aGdsvyfpagtpHrfr 58 
                 +G  + +p+g   +f+
  CTQ28146.1 186 KGSWIRIPSGHGMAFI 201
                 3444444444444333 PP

>> DUF4863  Domain of unknown function (DUF4863)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   7.3e-07    0.0026      86     141 ..      52     104 ..      23     110 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7.3e-07
     DUF4863  86 dlagqyHaHPyGEinlvvpldesaelkglegwqgaGWtvp.gpgsaHyPevrgGaal 141
                 + + ++H+HP GE  lv++ + s   +g      aGW     pgs H+P++++G+ l
  CTQ28146.1  52 QTSFPEHQHPGGEEILVLEGQFS---EGNR-DYPAGWYLRnPPGSSHQPHSNKGTQL 104
                 556789******97666543333...3333.4569**875168**********9875 PP

>> DUF4437  Domain of unknown function (DUF4437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   2.7e-05     0.098      34      93 ..      40      94 ..      13     110 .. 0.87
   2 ?    3.0   0.0     0.012        45      60     109 ..     170     214 ..     167     220 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.7e-05
                TS-EEEEEEE-TT-EE--BEESS-EEEEEEESEEEETTEE.....E-TTEEEEE-TT-EE CS
     DUF4437 34 dgasgflvkfkkgFespphihnvdyrgvVikGalhnddekaekmWlpkgsywtqPaGevh 93
                +  +++lv++ ++ + p h h    +++V++G+   ++++      p+g y   P G+ h
  CTQ28146.1 40 QARATSLVRYLPQTSFPEHQHPGGEEILVLEGQFSEGNRD-----YPAGWYLRNPPGSSH 94
                567899**********************************.....9***********877 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.012
                 EEEEESEEEETTEE.....E-TTEEEEE-TT-EEEETTS-EE.EEEEE-S CS
     DUF4437  60 gvVikGalhnddekaekmWlpkgsywtqPaGevhitaaeetenlayleig 109
                 +++++G l  ++         kgs+  +P G      a  +++++yl  g
  CTQ28146.1 170 LLIVEGNLIEGNSI-----HAKGSWIRIPSGHGMAFIAGIDKSMVYLKEG 214
                 56666777666666.....689*********6555555556669998765 PP

>> DMSP_lyase  Dimethlysulfonioproprionate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   2.4e-06    0.0085     103     158 ..      50     100 ..      43     105 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.4e-06
  DMSP_lyase 103 aPkvrYPdHhhaaeelYlvlsggaefrqgeaewlsrgiGevifnepgikhamrsae 158
                  P++ +P+H+h+  e  lvl g   f++g+ +     +G ++ n+pg++h+  s++
  CTQ28146.1  50 LPQTSFPEHQHPGGEEILVLEGQ--FSEGNRD---YPAGWYLRNPPGSSHQPHSNK 100
                 6************8888999886..*999996...788999999999999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       195  (0.0108762); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 2056.31
//
Query:       CTQ28147.1  [L=357]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-31  109.3   0.0    6.1e-18   65.3   0.0    2.0  2  Amino_oxidase  Flavin containing amine oxidoreductase
    3.5e-15   56.0   0.0    9.4e-15   54.6   0.0    1.8  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    7.8e-07   28.7   0.5    1.1e-06   28.1   0.5    1.2  1  FAD_binding_3  FAD binding domain
    1.8e-05   24.0   0.0    3.9e-05   22.9   0.0    1.6  1  FAD_binding_2  FAD binding domain
    9.8e-05   21.9   0.0    0.00013   21.5   0.0    1.2  1  FAD_oxidored   FAD dependent oxidoreductase
    0.00033   19.5   0.3     0.0005   18.9   0.3    1.2  1  HI0933_like    HI0933-like protein
    0.00072   18.9   0.2     0.0011   18.3   0.2    1.2  1  Thi4           Thi4 family
    0.00086   19.0   0.0     0.0012   18.5   0.0    1.3  1  DAO            FAD dependent oxidoreductase
     0.0054   16.0   0.0      0.006   15.9   0.0    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.015   14.4   0.4      0.019   14.0   0.4    1.1  1  GIDA           Glucose inhibited division protein A
       0.12   11.4   0.0        0.2   10.7   0.0    1.4  1  Lycopene_cycl  Lycopene cyclase protein
       0.18   12.4   0.4        0.4   11.3   0.4    1.6  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.18   11.0   0.6       0.32   10.2   0.6    1.4  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   3.8e-14   5.2e-11       1      66 [.      13      77 ..      13     102 .. 0.90
   2 !   65.3   0.0   4.4e-21   6.1e-18     204     452 .]     108     353 ..      80     353 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 3.8e-14
                   HHHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEETTEEEESS--EEET.TTHHHHHHHHHTTCCCC CS
  Amino_oxidase  1 laGLaaArqLlsaGfdVtvlEardrvGGRirtvrsdGylielGamwftg.agnpllellkelgleds 66
                   l+GL aAr L  aG ++++lE+r+r GGRi   +   + ++lGa+wf +  +++l +l++el++e+ 
     CTQ28147.1 13 LSGLYAARLLEKAGINCLLLEGRERMGGRILQANT--VEADLGATWFWPtIQPALKQLFRELNIESF 77
                   79****************************99999..***************************973 PP

  == domain 2  score: 65.3 bits;  conditional E-value: 4.4e-21
                    EETTHTHHHHHHHHHTTTTEEEETSEEEEEEEEETTCEEEEET..TSTEE..EESEEEE-S-HHHHHSSEEESCCSHHHHHHHHHS..EEEEEEEE CS
  Amino_oxidase 204 lprgGlsqlpealaeelrgldirlntrVkeikregdgvtvtle..dgevv..eaDaVvvTvplgvlkailfsPplpdekaeairnl..gfgsvnkv 293
                    ++ gG+s+lp+al ++l++ +i+++  Vk i++++++ ++  +  dg+ +  +a +V++++p+  ++ i+f Pplp    +a rn   ++++ +k 
     CTQ28147.1 108 RVSGGMSRLPDALLAKLKPERIQTGLQVKHIEQQNGTLNICGSyaDGRPFsrQAQHVLLALPPMLAAGINFFPPLPTTLLQAWRNTgtWMAPHAKY 203
                    448******************************99997776555599999************************************99******** PP

                    EEEESSGGSGCSTSECECECCCEEETTTEEEEECCECCCSTTTEEEEEEEEECHHHHHHHTTS-HHHHHHHHHHHHHHHHTGTSSTCSEEEEEECC CS
  Amino_oxidase 294 ilefdrkfwednalgqgvlvseltttlgeafissdfpsrappgkglvllvyvggdaaneleslsdeelvqavlrdLrklfgeevpepkatlvtrWh 389
                    +  ++  fw+ ++l  g+ +s++ ++ +   +s        p++  +l+ ++g   +++ +++ d  l + ++ +L +l+gee+ +p a   ++W 
     CTQ28147.1 204 VAVYPYNFWHRKGL-SGEVRSNIGPMVEIHDVSE-------PDRMFALFGFIGVPFHER-QKIGDAVLRDLCRAQLIRLLGEEAAYPHAEFLKDWA 290
                    ***********985.3346666666666666663.......334447*****9777766.899********************************* PP

                    TETTTSSSEEE.BTTHHHHHHHHHHCH..HCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHHHHH CS
  Amino_oxidase 390 tdplargsysyvsvgpghedydplakp..egdprlffAGehtsreypgtvegAilSGlraAaril 452
                    +dp++ +s  +  + p ++   p  ++    +++l    + +s+ +pg++ gAi ++   +++i+
     CTQ28147.1 291 ADPFTSTSRDL--ALPAGHSVPPASANngSWRNCLTGIASEWSTVFPGYLAGAIDAAAAGVQHII 353
                    *****666633..3334455555555535555555555577899999999999999888777775 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   6.9e-18   9.4e-15       1      68 []       8      72 ..       8      72 .. 0.94
   2 ?   -3.3   0.0       8.2   1.1e+04      18      30 ..     131     143 ..     120     155 .. 0.71

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 6.9e-18
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETTCEECTS---EEETTHHHHCHHHHCCC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpgvrvdygahifhgsgyypnvrrllrel 68
                   IvG+GlsGl+aA+lL kag+++llle r+r GGr+  ++   v +d+ga++f+++  +p++++l+rel
     CTQ28147.1  8 IVGGGLSGLYAARLLEKAGINCLLLEGRERMGGRILQANT--VEADLGATWFWPT-IQPALKQLFREL 72
                   9**********************************99855..569*********5.8*********97 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8.2
                    CTEEEEEE-SSSS CS
  NAD_binding_8  18 agfdvlllekrdr 30 
                     g++v  +e++++
     CTQ28147.1 131 TGLQVKHIEQQNG 143
                    3777777777765 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.5   8.3e-10   1.1e-06       2      35 ..       4      37 ..       3      50 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 8.3e-10
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrst 35
                   ++V+IVG+G++Gl +a+lL +aG++++l+e r++
     CTQ28147.1  4 IEVIIVGGGLSGLYAARLLEKAGINCLLLEGRER 37
                   68***************************98765 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.8e-08   3.9e-05       2      37 ..       6      41 ..       5      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.8e-08
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   vi++G+Gl+GL AA  + +aG +++++e  +++gg 
     CTQ28147.1  6 VIIVGGGLSGLYAARLLEKAGINCLLLEGRERMGGR 41
                   9*******************************9994 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   9.4e-08   0.00013       1      67 [.       5      72 ..       5     110 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 9.4e-08
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllt.sglvatdignkaeeqvvtgiareflerl 67
                  +v++vGGg++G+ AA    +aG + lL+e r+++GG    +  v +d+g +  +  ++   ++++++l
    CTQ28147.1  5 EVIIVGGGLSGLYAARLLEKAGINCLLLEGRERMGGRILqANTVEADLGATWFWPTIQPALKQLFREL 72
                  59**********************************86515567888885544444444444444444 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.3   3.7e-07    0.0005       2      40 ..       5      43 ..       4      46 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.7e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHH CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKil 40
                 +vi++GgG +Gl+aA  ++k+g + llle  +++g +il
   CTQ28147.1  5 EVIIVGGGLSGLYAARLLEKAGINCLLLEGRERMGGRIL 43
                 79********************************99887 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.2   7.8e-07    0.0011      16      56 ..       2      41 ..       1      52 [. 0.91

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.8e-07
                TEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TT CS
        Thi4 16 aesDvvivGaGssGLtaayylakkpdlkvailersvspGGG 56
                ++ +v+ivG+G sGL aa+ l k+ +++ ++le +  +GG 
  CTQ28147.1  2 MNIEVIIVGGGLSGLYAARLLEKA-GINCLLLEGRERMGGR 41
                6779*******************9.********99999985 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   8.8e-07    0.0012       2      90 ..       6     104 ..       5     179 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.8e-07
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSE.......EEEESSS..STHHSTHHHHHHHHHH..HHHH.HHHHHHHSSTTSEEEEEE CS
         DAO   2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrns.......gllhsgl..rylpeaselarlslea..leel.releeelgididyrrtGl 86 
                 v+i+GGG  Gl +A+ L ++g   +lle +++ g     +n+        ++++ +  + l++   + +l  e+  ++e+ + l e+   d + r +G 
  CTQ28147.1   6 VIIVGGGLSGLYAARLLEKAGinCLLLEGRERMGGRILQANTveadlgaTWFWPTIqpA-LKQ--LFRELNIESfsHQERgDMLFER-SKDAPSRHPGF 100
                 9****************999**********88773322333233333224444444211.221..2224444432257775555555.55677777776 PP

                 EEEE CS
         DAO  87 lsla 90 
                 +s  
  CTQ28147.1 101 VSSP 104
                 6664 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.3e-06     0.006       2      47 ..       5      49 ..       4     166 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.3e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskall 47
                 +v+++GgG  Gl aa+ l +ag++ +l+ ++++ ++g++l +++++
   CTQ28147.1  5 EVIIVGGGLSGLYAARLLEKAGINCLLL-EGRERMGGRILQANTVE 49
                 599*************************.88888888888777665 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4   1.4e-05     0.019       1      29 [.       5      33 ..       5      55 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLit 29
                +vi++GgG++G+ AA  + ++G++ lL+ 
  CTQ28147.1  5 EVIIVGGGLSGLYAARLLEKAGINCLLLE 33
                59************************993 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00014       0.2       2      36 ..       6      38 ..       5      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00014
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   v+++G+G+ gl  A  l  +k+g++ +l+e+ + +
     CTQ28147.1  6 VIIVGGGLSGLYAARLL--EKAGINCLLLEGRERM 38
                   9**********988888..**********997765 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   0.00029       0.4       2      37 ..       6      42 ..       5      50 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00029
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TT CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll.rl 37
                v++vGgG++gl +A  l + g +  ++e ++++  r 
  CTQ28147.1  6 VIIVGGGLSGLYAARLLEKAGINCLLLEGRERMGgRI 42
                89*******************9999999999988554 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.6   0.00023      0.32       1      30 [.       7      35 ..       7      44 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00023
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 iI+G+G  Gl aa  l+kag+ + l lE  
   CTQ28147.1  7 IIVGGGLSGLYAARLLEKAGI-NCLLLEGR 35
                 8********************.79999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3033.82
//
Query:       CTQ28148.1  [L=341]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-26   92.7   2.1    1.2e-26   92.7   2.1    1.7  2  ADH_N          Alcohol dehydrogenase GroES-like domain
      2e-17   63.4   1.1    2.4e-17   63.1   0.2    1.6  2  ADH_zinc_N     Zinc-binding dehydrogenase
    4.3e-05   24.6   0.2    0.00011   23.2   0.2    1.8  1  ADH_zinc_N_2   Zinc-binding dehydrogenase
    0.00068   19.2   0.7     0.0011   18.5   0.7    1.2  1  Glu_dehyd_C    Glucose dehydrogenase C-terminus
  ------ inclusion threshold ------
      0.019   14.3   0.3      0.034   13.5   0.3    1.4  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      0.028   13.7   1.5      0.048   13.0   1.5    1.4  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.034   14.4   0.2       0.77   10.1   0.0    2.9  3  FeoA           FeoA domain
      0.049   13.4   0.1      0.075   12.7   0.1    1.3  1  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro
       0.18   11.7   0.0       0.76    9.7   0.0    2.0  2  ADH_N_2        N-terminal domain of oxidoreductase
       0.19   11.1   0.6       0.33   10.3   0.6    1.3  1  ThiF           ThiF family


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   2.1   6.9e-30   1.2e-26       1     108 [.      28     136 ..      28     137 .. 0.92
   2 ?   -3.3   0.0       4.7   8.4e+03      52      63 ..     164     175 ..     159     180 .. 0.77

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 6.9e-30
                 TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEE.STT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTSS-SSSBS CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveev.gpevkklkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvsldGgfae 97 
                 pgevlikv+a+giCg D  +++g  e +v++p ++GHE+vG++ ++ gp    lk G+rV v  l   c+ C++C+ g+ nlC+++ ++g ++dGg+ae
  CTQ28148.1  28 PGEVLIKVEACGICGADSGVVEG-LEKSVEYPRVPGHEVVGTICKTsGPLPAWLKPGQRVGVGRLGGhCNACEQCRLGHFNLCQNQPVTGSTRDGGYAE 125
                 689********************.8******************9961566666********9877666******************************* PP

                 EEEECGGGEEE CS
       ADH_N  98 yvvvpekklvk 108
                 y++++e+ lv 
  CTQ28148.1 126 YMLARETGLVA 136
                 *****999886 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.7
                 S--TT-EEEE-S CS
       ADH_N  52 klkvGdrVvvep 63 
                 + + Gd Vv++ 
  CTQ28148.1 164 QAQAGDTVVIQG 175
                 578999999975 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       4.8   8.7e+03      65      88 ..     151     173 ..     149     176 .. 0.79
   2 !   63.1   0.2   1.4e-20   2.4e-17       1     125 [.     178     298 ..     178     303 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.8
                 SSCSHHHHHHHHHCEEEEEEEEEC CS
  ADH_zinc_N  65 cvGsgatleaalkllkpgGrlvvv 88 
                 c+G  at++a  k+ +  G  vv+
  CTQ28148.1 151 CAG-VATFNALKKSQAQAGDTVVI 173
                 778.88999988888888888877 PP

  == domain 2  score: 63.1 bits;  conditional E-value: 1.4e-20
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEEEH CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeefdl 99 
                 g+G++a+q+A+ +G++viav + ++ ++ +  lGa+++i++++++ ve ik++    g++v++ ++ + +++ + l +l p+Grl+vvG+   + +f++
  CTQ28148.1 178 GLGHLALQYARKMGFRVIAVGRGDDIAREVIALGAHYYIDTNKEEAVEVIKAFG---GAKVILSTITDSHAVATLLPALLPQGRLMVVGVDNAPLSFTP 273
                 89***************************************4449*********...9********************************999999999 PP

                 HHHHHTT-EEEEE-SSCHHHHHHHHH CS
  ADH_zinc_N 100 rnlllkeksilGsllgslreefkeal 125
                 + ++ +e++i G + g+   e+++ l
  CTQ28148.1 274 GLMVGRELQINGAMTGT-AIELEKTL 298
                 9999**********999.66666555 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.2   6.4e-08   0.00011       1     128 [.     210     331 ..     210     336 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 6.4e-08
                   TT-SEEEETT.STTHH..HHH-TT-EEEEEES-HHHHH.HHHHHHE.EEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfe..aatggegvDvvldtvggealleaslkvl.pggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadilee 92 
                   lGA+  id   +e++e  +a   +g  v+l t+   ++++ +l +l p+ Grl ++g +   +     p +   gr ++++  ++   +  a +le+
    CTQ28148.1 210 LGAHYYIDTNkEEAVEviKAF--GGAKVILSTITDSHAVATLLPALlPQ-GRLMVVGvDN--APLSFTPGL-MVGRELQINGAMT---G-TAIELEK 296
                   8******99945556565554..679********888889999999566.**98888442..333333444.3356777777775...4.5556999 PP

                   HHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--S CS
  ADH_zinc_N_2  93 laalieeGklrpvvdrvfpleeaaeAhrylesgrar 128
                    +++    ++r  ++ + +l++a+eA+++++sg+a 
    CTQ28148.1 297 TLNFSLLVAVRAQIE-TRSLAQAQEAYEKMRSGKAS 331
                   999999999*****8.99***************986 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.7   5.9e-07    0.0011      26     135 ..     163     267 ..     152     290 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5.9e-07
  Glu_dehyd_C  26 afewepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGat.YvdsretpvdeipeaseemdlvvEaTGsakhafeaieala 122
                  +     +++++ G G lG Lal   +  ++g+  v  +gr d  d + +++ +lGa  Y+d+++++  e+ +a     +++ +   ++++   + al 
   CTQ28148.1 163 SQAQAGDTVVIQGIGGLGHLALQYAR--KMGFR-VIAVGRGD--DIAREVI-ALGAHyYIDTNKEEAVEVIKAFGGAKVILSTITDSHAVATLLPALL 254
                  445566899************88877..58995.88999854..5555555.799972589888877777799999999999999999999999**** PP

  Glu_dehyd_C 123 pnGvaaLlGvped 135
                  p+G  + +Gv + 
   CTQ28148.1 255 PQGRLMVVGVDNA 267
                  *********9864 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   1.9e-05     0.034      32      73 ..     164     205 ..     154     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.9e-05
                   S-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C  32 kelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73 
                   +  +g tv i G+G +G+ + ++++++g++via+ r  +  +
    CTQ28148.1 164 QAQAGDTVVIQGIGGLGHLALQYARKMGFRVIAVGRGDDIAR 205
                   556899***************************998766444 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.5   2.7e-05     0.048      30     100 ..     170     241 ..     150     252 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTC.ECEEHCHHHHHHHHHHHH-SEEEE--- CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgak.fvevlksqeellaeavkeadvvigtvl 100
                  +v++ G G  G  A++ a+++g +V ++    + ++++ +lga+ ++++ k+++ ++ +a   a v+ +t+ 
   CTQ28148.1 170 TVVIQGIGGLGHLALQYARKMGFRVIAVGRGDDIAREVIALGAHyYIDTNKEEAVEVIKAFGGAKVILSTIT 241
                  57777***********************************887636999999999999*********99985 PP

>> FeoA  FeoA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0         1   1.8e+03       6      40 ..      80     115 ..      78     141 .. 0.70
   2 ?   10.1   0.0   0.00043      0.77       4      34 ..     163     193 ..     163     196 .. 0.94
   3 ?   -0.2   0.0      0.69   1.2e+03      26      59 ..     279     313 ..     248     321 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1
                 --TT-EEEEEEE-T.T.SSHHHHHHHHT--TT-EEE CS
        FeoA   6 lkeGergeiarisd.edpellrrLremGlvpGarie 40 
                 lk+G+r+ + r+   +++  + rL  + l+ ++ ++
  CTQ28148.1  80 LKPGQRVGVGRLGGhCNACEQCRLGHFNLCQNQPVT 115
                 688999999998774333445677777777777766 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00043
                 GG--TT-EEEEEEE-TT.SSHHHHHHHHT-- CS
        FeoA   4 sdlkeGergeiarisdedpellrrLremGlv 34 
                 s+++ G++++i +i   ++  l++ r+mG++
  CTQ28148.1 163 SQAQAGDTVVIQGIGGLGHLALQYARKMGFR 193
                 6899************9999**********8 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.69
                 HHHHHHT--TT-EEEEEEE-TTS-SEEEEET.TEE CS
        FeoA  26 rrLremGlvpGarievvarapfggplvvrvg.dtr 59 
                 r L   G   G+ ie+ +  +f   ++vr + +tr
  CTQ28148.1 279 RELQINGAMTGTAIELEKTLNFSLLVAVRAQiETR 313
                 66666777889999999888887777777665654 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   4.2e-05     0.075      20      61 ..     158     197 ..     151     258 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.2e-05
                    HHHHHTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEE CS
  ELFV_dehydrog  20 emlkklkldslegkrvaisGsGnvgsyaallltelgakvvav 61 
                    ++lkk + +  +g +v+i+G G +g+ a + + ++g +v+av
     CTQ28148.1 158 NALKKSQAQ--AGDTVVIQGIGGLGHLALQYARKMGFRVIAV 197
                    456664444..899**************************98 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00043      0.76      15      39 ..      13      37 ..       5      70 .. 0.81
   2 ?   -1.7   0.0       1.4   2.6e+03      66      90 ..     149     173 ..     144     177 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00043
     ADH_N_2 15 esdfeleeeelpelkdGevlvraly 39
                + ++e +e+elp +++Gevl++++ 
  CTQ28148.1 13 PGQLECVEKELPVPGPGEVLIKVEA 37
                568899***************9975 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
     ADH_N_2  66 mrggavgeVveSknpdfkvGdlVvg 90 
                 +  ++v+   + k+++ ++Gd+Vv 
  CTQ28148.1 149 LLCAGVATFNALKKSQAQAGDTVVI 173
                 556778888889999999***9986 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.6   0.00018      0.33      19      47 ..     169     197 ..     149     205 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
                 SEEEEE--SHHHHHHHHHHHHHTTTEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  19 skvllvGaGglGsellknLalsGvgkltl 47 
                  +v++ G+GglG+ +l++  ++G++ + +
  CTQ28148.1 169 DTVVIQGIGGLGHLALQYARKMGFRVIAV 197
                 689**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2946.09
//
Query:       CTQ28149.1  [L=107]
Description: Thioredoxin [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-27   95.8   0.0    1.4e-27   95.6   0.0    1.0  1  Thioredoxin    Thioredoxin
    0.00014   22.3   0.0     0.0034   17.8   0.0    2.0  1  Thioredoxin_2  Thioredoxin-like domain
    0.00015   22.0   0.0    0.00021   21.5   0.0    1.3  1  Thioredoxin_8  Thioredoxin-like
    0.00063   19.5   0.0    0.00077   19.2   0.0    1.1  1  Thioredoxin_9  Thioredoxin
    0.00069   19.5   0.0    0.00083   19.3   0.0    1.1  1  AhpC-TSA       AhpC/TSA family
     0.0053   16.9   0.0     0.0091   16.2   0.0    1.4  1  Glutaredoxin   Glutaredoxin
  ------ inclusion threshold ------
      0.013   15.6   0.0      0.022   14.9   0.0    1.3  1  Thioredoxin_7  Thioredoxin-like
       0.02   14.9   0.0      0.026   14.6   0.0    1.2  1  Thioredoxin_3  Thioredoxin domain
      0.034   14.0   0.0       0.04   13.7   0.0    1.1  1  TraF           F plasmid transfer operon protein
      0.039   13.7   0.0      0.043   13.5   0.0    1.2  1  Redoxin        Redoxin


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.0     8e-31   1.4e-27       3     101 ..       4     102 ..       2     104 .. 0.96

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 8e-31
                  EESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHH CS
  Thioredoxin   3 lvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaaf 100
                  +++++++F ++v +++ +vlv+F+ApwC +C+ +aP +++la e+++k+k++kv+vd+++dla++++++ iP +k+f +g++v +++gar+k+++ a 
   CTQ28149.1   4 KEISTTEFTADVLESAIPVLVDFWAPWCNPCRTVAPIIDALALEHAGKLKVYKVNVDKHPDLASQHGIRTIPFFKIFVKGESVIEFSGARPKSDFDAL 101
                  678999**************************************************************************************999877 PP

                  H CS
  Thioredoxin 101 l 101
                  l
   CTQ28149.1 102 L 102
                  6 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.9e-06    0.0034       7     109 .]      21     102 ..      15     102 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.9e-06
  Thioredoxin_2   7 pvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgkeivarlpGyvp 101
                    pvlv+f++p+C  C+     ++ l ++           + + + v++++             + +la ++g+r  P +  f  g+  v +  G+ p
     CTQ28149.1  21 PVLVDFWAPWCNPCRTVAPIIDAL-AL--E-----HAGKLKVYKVNVDK-------------HPDLASQHGIRTIPFFKiFVKGE-SVIEFSGARP 94 
                    89**************99998888.11..1.....11223333333333.............4457899********65488888.66699***** PP

  Thioredoxin_2 102 aeeleall 109
                    + +++all
     CTQ28149.1  95 KSDFDALL 102
                    ***99987 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.2e-07   0.00021       4      46 ..      22      62 ..      20      82 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.2e-07
                   EEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS- CS
  Thioredoxin_8  4 vlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkk 46
                   vl+ f+a wc pc+++ p +++l  ++    k+++  v++dk 
     CTQ28149.1 22 VLVDFWAPWCNPCRTVAPIIDALALEHA--GKLKVYKVNVDKH 62
                   89*********************99998..8999999998874 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   4.3e-07   0.00077      46     119 ..      23      95 ..       4     102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4.3e-07
                    EE.E--TT-HHHHHHHHHHHHHH.HH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS-H CS
  Thioredoxin_9  46 lv.ltedwCgDaavnvPvlakia.elnpnievkillrdenlelmdqyltngaraiPtliildeegeelgvwgerPa 119
                    lv + ++wC  ++ + P+++++a e + +++v  +  d++++l  q    g r+iP + i+ ++ ++++  g rP+
     CTQ28149.1  23 LVdFWAPWCNPCRTVAPIIDALAlEHAGKLKVYKVNVDKHPDLASQH---GIRTIPFFKIFVKGESVIEFSGARPK 95 
                    554678****************988899****************987...99***********9999999999998 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   4.6e-07   0.00083      25      77 ..      19      69 ..       2      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 4.6e-07
                TSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHH CS
    AhpC-TSA 25 gkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfi 77
                  pv++ f++  wc +C+t +p + +l+ e +  +++v+ v+vd++ ++++++
  CTQ28149.1 19 AIPVLVDFWAP-WCNPCRTVAPIIDALALEHA-GKLKVYKVNVDKHPDLASQH 69
                4699*******.****************9998.679*********99887765 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.1e-06    0.0091       4      60 .]      26      86 ..      22      86 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.1e-06
                  EESTSSHHHHHHHHHHHHTT......GGEEEEEGCCSHHHHHHHHHHHTSSSSS..EEEETTEEE CS
  Glutaredoxin  4 ftkptCpyCkkakrlLkelg......vkfeeidvdkdeeireelkelsgvrtvP..qvfidgkhv 60
                  f  p+C  C+ +  + + l       +k+  ++vdk++++  ++    g+rt+P   +f++g+ v
    CTQ28149.1 26 FWAPWCNPCRTVAPIIDALAlehagkLKVYKVNVDKHPDLASQH----GIRTIPffKIFVKGESV 86
                  5569************888855555667****************....******77799999865 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.2e-05     0.022      12      35 ..      14      37 ..       8      43 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
                   HHHHHT--EEEEE--TT-HHHHHH CS
  Thioredoxin_7 12 kaaergkpvlvffgaswcftCqal 35
                      e+ +pvlv+f a wc +C+++
     CTQ28149.1 14 DVLESAIPVLVDFWAPWCNPCRTV 37
                   567899***************987 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.4e-05     0.026       7      68 ..      28      96 ..      19     103 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
                   SSSSTTCHHHHHHHHHHCHCCTCECEEECC..TTHHHH.HHCT-SSSS..EEECTTC..EEEESS---C CS
  Thioredoxin_3  7 gpgCakCpklekavkeaaaekgikaevekv..tdfeei.ekygVmsvP..alvidgk..vvvsGkvpse 68
                    p C+ C++++ ++ ++a e   k++v+kv   + +++ +++g++++P  ++++ g+  +++sG+ p+ 
     CTQ28149.1 28 APWCNPCRTVAPIIDALALEHAGKLKVYKVnvDKHPDLaSQHGIRTIPffKIFVKGEsvIEFSGARPKS 96
                   567******************999999998778899999*********444588876225577765554 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.2e-05      0.04     135     192 ..      25      73 ..      20      87 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.2e-05
        TraF 135 fFyrgkcpyceaqapilqafadky..glevraVsvdgrplpelpnarvdkgqaarlgvkr 192
                  F ++ c  c+  api++a+a ++  +l+v  V+vd+ p+  l++         + g+++
  CTQ28149.1  25 DFWAPWCNPCRTVAPIIDALALEHagKLKVYKVNVDKHPD--LAS---------QHGIRT 73 
                 588899**************9999878***********99..766.........555555 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.4e-05     0.043      30      73 ..      21      62 ..       7      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
                EEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSS CS
     Redoxin 30 kvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadnd 73
                +v+v f++  +c +C++ +p ++ la + +++  +v  v++d+ 
  CTQ28149.1 21 PVLVDFWAP-WCNPCRTVAPIIDALALE-HAGKLKVYKVNVDKH 62
                5899*****.**************9888.777788877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 840.64
//
Query:       CTQ28150.1  [L=173]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-07   31.6   0.1    5.3e-07   29.6   0.0    1.9  2  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0     3e-11   5.3e-07       4      63 ..      46     104 ..      44     110 .. 0.89
   2 ?   -0.6   0.0     0.078   1.4e+03      51      80 ..     142     171 ..     125     173 .] 0.66

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 3e-11
                 HHHHHHHHHHHCCGSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHH CS
         CMD   4 lraltalreallareggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaev 63 
                 +  +++l   + a + +L++ + eLi l+v+++ng ++++++H+ a l+aG tee+ +++
  CTQ28150.1  46 ATGWNELLSRVRA-DFSLELIYLELIMLRVAVLNGAQFEWRVHYPAYLQAGGTEEKAQAL 104
                 6678888889998.777**************************************99853 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.078
                 HHTT--HHHHHHHHHHHHHHHSHHHHHHHH CS
         CMD  51 leaGvteeeiaevlaqaaayagwpaaraAl 80 
                 l++   e +  e++a  aay  + +++ Al
  CTQ28150.1 142 LKNLFGETKTVEAVATVAAYNMVSRFLVAL 171
                 455555566667777777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1326.66
//
Query:       CTQ28151.1  [L=472]
Description: ubiquinol oxidase subunit I, cyanide insensitive [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.5e-160  534.4  24.9   1.7e-160  534.2  24.9    1.0  1  Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  534.2  24.9  9.5e-165  1.7e-160       1     418 []       9     437 ..       9     437 .. 0.99

  Alignments for each domain:
  == domain 1  score: 534.2 bits;  conditional E-value: 9.5e-165
  Cyt_bd_oxida_I   1 laRlqfaltavfHflfvpltlGlalllailetlylrtgdekykklakfwgklfainFavGvvtGivlefqfgtnWseysrfvGdifgapLaiEgl 95 
                     laR+qfa+t++fH++f+++t+Gla +l++le l+l++++++y++l++fw+k+fa+nF++Gvv+G+v+++qfgtnWs++s+f+G+i g++L++E+l
      CTQ28151.1   9 LARIQFAFTVSFHIIFPAITIGLASYLVVLEGLWLKKRSAVYLDLYHFWSKVFAVNFGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLTYEVL 103
                     8********************************************************************************************** PP

  Cyt_bd_oxida_I  96 lAFflEstflglmlfgwdrvskklhllatwlvaigtllSalwIlaanswmqtPvGaelnpdtgraeltdflavlfnpsalakflHtvlaalltaa 190
                     +AFflE+ flg+mlfg+d+v ++lh++at++va+gtl+S++wI a nswm+tP+G++++  +g +e +d+++++fnps++++++H+++aa+l++a
      CTQ28151.1 104 TAFFLEAGFLGVMLFGRDKVGPGLHFFATCMVALGTLISTFWIQASNSWMHTPQGYSIE--NGVVEPQDWIKIVFNPSFPWRLVHMTTAAFLASA 196
                     **********************************************************7..4599****************************** PP

  Cyt_bd_oxida_I 191 ffvagvsawyllr.rekefarkslkialvvalvaallqallGdlsgkevaetqpaKlAAmeglwetee...aplslfgipdeeeeknefaieiPg 281
                     ffv +  aw+ll+ r++ + rk++++al++a+++a++q++lGd +g +++e+qpaK+AA+eg+we++    +pl+lfgipd e+e+++fa+e+P+
      CTQ28151.1 197 FFVGASGAWHLLKgRDTPAIRKMFSMALWMAAIIAPIQVFLGDGHGLNTLEHQPAKIAAIEGHWENRPgvaTPLILFGIPDMEQERTKFALEVPY 291
                     *************99999***********************************************9989999*********************** PP

  Cyt_bd_oxida_I 282 llsllatgsldgevkGlndlpkeevPpvalvfwsfrimvglgvlllllallalll.........rwllrllllaiplpfiaveaGWivtevGRqP 367
                     l sl++t+sl+++++ l+++p+ ++P+ ++vfwsfrimvglg+l++   +l+l+l         r +l+++ll++p ++ia+ aGW++te+GRqP
      CTQ28151.1 292 LGSLILTHSLNQQIPALKSFPPADRPNSTVVFWSFRIMVGLGLLMITQGILSLWLrykkklyasRPFLWFVLLMGPSGLIAILAGWFTTEIGRQP 386
                     ****************************************************************77***************************** PP

  Cyt_bd_oxida_I 368 WivygllrtadavspvsagevllslilflllylvLlvvevylllklikkgp 418
                     W+vygl rt++avs +   ++ +sl++f+++y +++ v++ ++++likkgp
      CTQ28151.1 387 WTVYGLQRTREAVSAHGELHMSMSLMAFIIVYSAVFGVGYIYMMQLIKKGP 437
                     *************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3662.17
//
Query:       CTQ28152.1  [L=334]
Description: Cytochrome d ubiquinol oxidase, subunit II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-94  314.5  34.5    8.4e-94  314.3  34.5    1.0  1  Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.3  34.5   4.7e-98   8.4e-94       1     303 []       4     323 ..       4     323 .. 0.95

  Alignments for each domain:
  == domain 1  score: 314.3 bits;  conditional E-value: 4.7e-98
  Cyt_bd_oxida_II   1 lqliwflligvllagYvvldGfDlGvGillpllakkdeerrlllnsigpvWdgnevWLvtaggalfaaFPlayatlfsglylpllliLlglilR 94 
                      l+liwf +i++ +++Y+v+dGfDlG+Gi++p+ +++ eer++++ns++pvWdgne+WLv++g+ l++aFPlaya++  +l  pl+l+L+gli+R
       CTQ28152.1   4 LPLIWFGIIIFSILMYIVMDGFDLGIGIIFPF-NRNAEERDVMVNSVAPVWDGNETWLVMGGASLYGAFPLAYAVITDALAAPLTLMLIGLIFR 96 
                      789*****************************.78888******************************************************** PP

  Cyt_bd_oxida_II  95 gvafefrskaeskrwrklwdlaffigSllaalllGvalgnllqGvpfdadey.g.flsdllnpfallvglllvalflllGalylalktegelqe 186
                      gvafefr ka+ ++++ +wd af+ gS+laa+++G+++g++++G+p++ + y g   + +l+pfal++gl l+++++llG+++l++kteg+lq+
       CTQ28152.1  97 GVAFEFRFKAT-PAHKPFWDKAFISGSILAAFCQGIVVGAVINGLPVSGRAYaGsA-FIWLDPFALFCGLGLLIAYALLGSTWLMVKTEGHLQH 188
                      *********86.68********************************9644554753.34*********************************** PP

  Cyt_bd_oxida_II 187 rarrlalvlalvllvllvvvllwtll...............lvllllavlalllavlllrk.kr..eglaflasaltvllvvlllavslfPyll 262
                      ++ +l+l l+l+l+v++ +++lwt+l               +++l+++vl+l+  + ++r+ +r  ++++f++++++v+l + +l++s++P+++
       CTQ28152.1 189 KMAKLTLPLLLALMVAMGIISLWTPLahphianrwfslpnlFWFLPVPVLVLFSSWGIVRAvNRcaHYTPFFLTLMLVFLGFSGLGISIWPTII 282
                      **************************************996588899*********99898766546669************************ PP

  Cyt_bd_oxida_II 263 pssltianaasseytlkvmlivalillplvlaytawlyrvf 303
                      p+s+++++aa++  ++++ml ++l+++p++l+yt+w+y+vf
       CTQ28152.1 283 PPSVSLRQAAAPVMSQSFMLAGSLVIIPVILVYTFWSYYVF 323
                      ****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2624.94
//
Query:       CTQ28153.1  [L=312]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-34  119.7   0.0    1.3e-34  119.4   0.0    1.1  1  LysR_substrate  LysR substrate binding domain
    1.5e-17   63.3   0.1    2.5e-17   62.6   0.1    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.06   13.4   0.0       0.12   12.4   0.0    1.5  1  HTH_29          Winged helix-turn helix
      0.073   12.6   0.1       0.13   11.8   0.1    1.3  1  GerE            Bacterial regulatory proteins, luxR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.0     3e-38   1.3e-34       3     207 ..      92     297 ..      90     299 .. 0.93

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 3e-38
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSE CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gepv 96 
                     +++g L+i+++ +++  +l ++ +++r+++ +vel l  +d  +l + l+e+ +D+a+r    +++++ ar+L +  ++ +aspd+ Lar g p+
      CTQ28153.1  92 HPHGALKITCSVAFGYAHLIDIFEEYRKKNHDVELILDLDD--HLTN-LNENNVDIALRITATPPQNYAARKLSKISWLYCASPDY-LARkGSPT 182
                     689**************************************..9999.99999*********************************.******** PP

                     CGGGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESST.TCE.EEEEEEE CS
  LysR_substrate  97 sledLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpep.plp.relylvy 187
                        +La ++++ ++  ++      +     +  +kpr  +++ns   ll ++++G Gia+lp++++++++++g lv l l++  ++p   ly++y
      CTQ28153.1 183 KRTELASHECLIYPGLTPalRYNDIASPHPQCAIKPRTPVQANSSLLLLKAALSGQGIAWLPSYLISQHIDAGALVPLKLDGKyAYPtHSLYALY 277
                     ************98555565666666666666**************************************************9977779999999 PP

                     ETTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflrea 207
                      +++ ++p+vr fidfl e+
      CTQ28153.1 278 FPSKFRNPKVRSFIDFLVEE 297
                     99999************986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.1   5.6e-21   2.5e-17       1      60 []       7      66 ..       7      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 5.6e-21
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++q++ +v++ e + +++AA+ L+ls++avs+ ++ +Ee lgvpL++Rt+r+++LTeaGe
  CTQ28153.1  7 IKQIEMLVKISEGKGLSEAARLLNLSPSAVSKGLAVMEENLGVPLIQRTTRSFQLTEAGE 66
                589********************************************************7 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.6e-05      0.12       2      30 ..      10      37 ..       9      41 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.6e-05
      HTH_29  2 aqallllaeGvstvsqiAkllglsrrtvy 30
                +++l +++eG +  s++A+ll+ls++ v 
  CTQ28153.1 10 IEMLVKISEGKG-LSEAARLLNLSPSAVS 37
                5678899****9.*************995 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1     3e-05      0.13       3      45 ..       5      47 ..       4      57 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3e-05
                S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHH CS
        GerE  3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKL 45
                L+ ++ e+L  + eGk   e A+ ln+S+  V+  ++ + + L
  CTQ28153.1  5 LTIKQIEMLVKISEGKGLSEAARLLNLSPSAVSKGLAVMEENL 47
                999****************************997666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2423.62
//
Query:       CTQ28154.1  [L=426]
Description: Inner membrane transport protein YhjV [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00052   19.2  36.1    0.00067   18.8  36.1    1.1  1  Trp_Tyr_perm  Tryptophan/tyrosine permease family
  ------ inclusion threshold ------
      0.058   13.9   0.3      0.058   13.9   0.3    4.4  4  DUF3899       Domain of unknown function (DUF3899)


Domain annotation for each model (and alignments):
>> Trp_Tyr_perm  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8  36.1   7.5e-08   0.00067       7     370 ..      23     402 ..      20     425 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.5e-08
  Trp_Tyr_perm   7 ggvlliagtviGaGmlalPvatagagfipsllllilswvlmlasgllllEvllaakeeasfttlakkllGkkgniivalvllfllyiLlvAyisggG 103
                   g v+l +g++iG+G+   P++    g  + +l++il    + +   l++E +   +e+ s+ ++ ++++G+ + ++ ++ + f +   +v y  ++ 
    CTQ28154.1  23 GWVVLCIGAAIGSGIVFFPLQVGLKGVWVFALAVILGYPAVYYMQKLFIETMARSDEQDSYLSIITSYVGSRWGVLLGALYSFTMLKSMVEYALAIT 119
                   558999*************999887777777777777777888889**********************************99999888887765555 PP

  Trp_Tyr_perm 104 silselleeasg..ialsarlavliftlv.lgalvvlstkavdrinrvllflklvafvlllalllskvksdvLlsaksdtskvslvlsalPvlllsf 197
                   +  ++ l++      +ls++    ++ +  l+ +   + k+  +++  ++ +klv +v++ +++++  + +++ ++ +    v  ++++lP+++ s 
    CTQ28154.1 120 NDSASYLKTFGLtnQTLSEHWWWSLLLIAgLSLVASKGEKLLFKVSGSMIAVKLVIIVAIGFVVIPFWDVSNIGAFPTVSHLVVGTFPTLPFAIFSI 216
                   54444444444311344444444443333033333444559999999999999999999999999999999999977778888999*********** PP

  Trp_Tyr_perm 198 GFhgivpslvkyldknvkk...vkkailiGtlia.LvlyllWelivlG...nlpreelariiakggnldtlveallel..leskslelavelFsflA 285
                    F gi   ++  + k++++   +k+ il    +a Lvl+    l v+    ++++++ +r+ +   n+++l  a + +   + k++++++++Fs   
    CTQ28154.1 217 MFVGILNPMNIAYKKREEDkdvAKYKILRVHKVAyLVLVATVLLFVMSivlSISEADALRAYQD--NISALALAAKVIpgATVKYMSVILNVFS--- 308
                   ******9998888776433122566777555544366655555555541005555555555555..5666666655542256788888888887... PP

  Trp_Tyr_perm 286 latSflGvalglfdyladlfkl..s......dskkgrlklglvtflp.....PlvlalffPegflkalgyAGlaatilavilPallawkarkkkkna 369
                   ++t fl+  l++ + ++ l k+  +      +++++ +++   +f++      l++ + fP  +lk   + G+   ++ +i+P ++++k+ k    +
    CTQ28154.1 309 IVTAFLALYLAVHESFVGLIKVtvEkivkpqENNSKAISV--AAFVMvvlvlWLIVLTNFP--ILKVFVFGGVTYGLISCIIPGFIILKNDKFSDLR 401
                   5677888887777777777765211111100233333333..3344333333555556666..688889999*************999987765555 PP

  Trp_Tyr_perm 370 p 370
                    
    CTQ28154.1 402 G 402
                   4 PP

>> DUF3899  Domain of unknown function (DUF3899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.013   1.1e+02      17      79 ..      89     155 ..      64     156 .. 0.71
   2 ?   13.9   0.3   6.5e-06     0.058      15      84 .]     211     269 ..     192     269 .. 0.70
   3 ?   -1.1   0.9      0.31   2.8e+03      61      61 ..     365     365 ..     331     387 .. 0.54
   4 ?   -4.1   4.1         2   1.8e+04      74      81 ..     378     385 ..     343     424 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.013
     DUF3899  17 llivlnsGfFdgfsygfrklkklflkk...skkddsyyeykekkkes..skkstrplliiGlllivls 79 
                  ++ ++ G++ g  y+f  lk+++  +   ++ ++sy++     +++  s ++ + ll+i++l++v s
  CTQ28154.1  89 SYVGSRWGVLLGALYSFTMLKSMVEYAlaiTNDSASYLKTFGL-TNQtlSEHWWWSLLLIAGLSLVAS 155
                 5555666888888888888886644447665555555555554.333578888888888888888765 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 6.5e-06
     DUF3899  15 gillivlnsGfFdgfsygfrklkklflkkskkddsyyeykekkkesskkstrplliiGlllivlsivlll 84 
                  +++ ++  G+++   + ++k        +++d++  +yk  +   ++k++++ l++ +ll+v+sivl++
  CTQ28154.1 211 FAIFSIMFVGILNPMNIAYKK--------REEDKDVAKYKILR---VHKVAYLVLVATVLLFVMSIVLSI 269
                 444444444444444444444........66777777777765...*********************985 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.31
     DUF3899  61 s 61 
                 +
  CTQ28154.1 365 N 365
                 3 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 2
     DUF3899  74 llivlsiv 81 
                  + ++s +
  CTQ28154.1 378 TYGLISCI 385
                 44444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1356  (0.0756317); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3272.40
//
Query:       CTQ28155.1  [L=394]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-32  111.0   0.0    8.4e-32  110.7   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    7.1e-08   31.7   0.0    3.7e-07   29.3   0.0    2.0  1  Aminotran_MocR   Alanine-glyoxylate amino-transferase
     0.0038   16.6   0.0     0.0061   15.9   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.0   1.4e-35   8.4e-32      37     363 .]      63     389 ..      52     389 .. 0.88

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 1.4e-35
                    TTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-H CS
  Aminotran_1_2  37 lneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldl 132
                    + +yg ++g pel+ a+++ +  + ++    e +vvv+sG+++ +++l+++l +npgd++++ +pty    ++++l+ + + ++ +   +  ++ +
     CTQ28155.1  63 AFQYGLSEGNPELRAAICQIML-DRGIHCGVE-NVVVTSGSQQSLDILARAL-INPGDVVVLERPTYLAALQVFQLAEANLLSVGT---DAEGMIV 152
                    679*******************.999******.*******************.***************************999994...56699** PP

                    HHHHHHHTTHHCTTETEEEE.EEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTT...EEEEEESSSTTS CS
  Aminotran_1_2 133 ealeealkeapegnkktkvi.lvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepn...llivgslsKafG 224
                    ++le++l +      ++k + +v +  NP G+ + ++  ++l++l  +y ++++ D+ Y++  f++++++++ra+ +e+ n   ++ ++++sK + 
     CTQ28155.1 153 DELETLLLST-----RIKAVyIVPTFGNPGGVSLAEQRRKQLVELSLRYDFIIIEDDPYGEINFTDSSFIPLRAWSAERGNndnVVYTSTFSKIL- 242
                    *******994.....44544278899**********************************************888888888899*********98. PP

                    SGGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS...TEEEECCSCSSEEEEEETHH. CS
  Aminotran_1_2 225 laGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael...glkvlasqsgmflltdlsae. 315
                    ++G RvG+++  +++++++ +++++    +s+l++ ++ +  ++ +   ++   r+ ++ + ++l  +L +     l++ ++ +gmfl+  ++ + 
     CTQ28155.1 243 APGARVGWLVLPDWLKRAVVNIKQTTDLhTSALSQSLTSHYLHSGRLPGQIALIRKAYELKCRVLSHHLLNElgdHLTFHQPMGGMFLWAKFKYAm 338
                    5999********************99888555555555555555555569999999999999999888755569899999999**********998 PP

                    .CHHHHHHHHHHTCTEEEEEGGGGTS....TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 316 .takelskkLleevgvyvtpgtsftv....pgrlRitvAglteeeleelveal 363
                     t ++l+k +++  gv+ +pg+ f++       lR+++ ++tee+l e+v++l
     CTQ28155.1 339 dTTQWLQKTIRN--GVVFVPGEFFYCeepdHCTLRMSYVSTTEENLIEAVKRL 389
                    555555555554..6***********9976669*****9**********9987 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   6.1e-11   3.7e-07     128     263 ..     120     251 ..      47     332 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 6.1e-11
                     EEEES--HHHHHHHHHHT-EEEEEEEETTEE-HHHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTSS-BS. CS
  Aminotran_MocR 128 lvtvpGydrhfllleelGielltvdlqddGpdvdaveklvaedasvkGilavpkysnptGetiseevarrlaalkaaapdfrifaddayavhdlv 222
                     +   p y   + + +    +ll+v  + +G  vd +e l  + + +k ++ vp++ np+G  ++e++ ++l+ l     df i  dd y   ++ 
      CTQ28155.1 120 VLERPTYLAALQVFQLAEANLLSVGTDAEGMIVDELETLLLS-TRIKAVYIVPTFGNPGGVSLAEQRRKQLVELSL-RYDFIIIEDDPYGEINF- 211
                     45668888888888888999******************9875.78***************************9975.68**********98777. PP

                     SSSS----HHHHHHHHT-TTSEEEEEES.TTTS-TTSS-EEE CS
  Aminotran_MocR 223 aeedkdanivalardaGhpdrafvlast.skitfaGaGvafv 263
                       + +   + a +++ G  d  +v++st ski   Ga v+ +
      CTQ28155.1 212 -TDSSFIPLRAWSAERGNNDN-VVYTSTfSKILAPGARVGWL 251
                     .33444466666777777665.66666659999999999876 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     1e-06    0.0061      35     144 ..      89     203 ..      87     205 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1e-06
                      HHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEEEEB-GGGB---HH CS
  DegT_DnrJ_EryC1  35 ylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitertkaIlpVhlyGqvadmd 128
                      ++gv++++ +s   ++l ++ ral ++pgd V+    t++a  ++ + + a+   v  d++ + +d  ++  ++ +r ka+ +V ++G++  ++
       CTQ28155.1  89 HCGVENVVVTSGSQQSLDILARAL-INPGDVVVLERPTYLAALQVFQLAEANLLSVGTDAEGMIVDELET-LLLSTRIKAVYIVPTFGNPGGVS 180
                      589999998888888999888887.9*********************************88777776554.5678889**********997654 PP

                      .......HHHHHHHHCT-EEEEE CS
  DegT_DnrJ_EryC1 129 .......alkaiaakhglkvieD 144
                             +l +++ +++ ++ieD
       CTQ28155.1 181 laeqrrkQLVELSLRYDFIIIED 203
                      22222224555555666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 3319.56
//
Query:       CTQ28156.1  [L=401]
Description: cystathionine beta-lyase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.2e-103  345.2   0.0   4.3e-103  344.8   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
      0.023   14.0   0.0      0.059   12.7   0.0    1.6  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
       0.18   10.7   0.0       0.37    9.7   0.0    1.5  2  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.8   0.0  7.2e-107  4.3e-103       9     381 ..      21     396 ..      13     397 .. 0.92

  Alignments for each domain:
  == domain 1  score: 344.8 bits;  conditional E-value: 7.2e-107
                      TTCHTTTTBSS--B---SBBBESSHHHH.......CTTCSSS.-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEE CS
  Cys_Met_Meta_PP   9 qekdeqtgavavpiyltstykfkdvdea.......fageekg.yeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaGdei 94 
                       +++   g v++p+y++st  fk+++e        f++ e++   Y+R+g+p + ++++++a+Legg ++l+v++G+aA ++a+lal+k+Gd+i
       CTQ28156.1  21 FDPEVFGGVVNPPVYHASTVIFKNCKELnerhqalFEDAEDEvMYYGRFGTPITFAVQKALAELEGGYRSLLVPTGLAACTSALLALVKSGDHI 114
                      55554557899**************99888999996666666699************************************************* PP

                      EEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGGGT CS
  Cys_Met_Meta_PP  95 vvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrplklg 188
                      +vs+++Yg+t+ ++++vl k+g++++f+d++  + + + ++ent +v++E+p++ + ++ Di++i+++a+++++ v++Dnt+a+pl+++p+++g
       CTQ28156.1 115 LVSSSVYGPTRGFVNNVLAKMGVSATFFDPTIGDGIGQLFQENTTVVFTESPGSQTFDIQDIPAITRVAHAHNAKVIIDNTWATPLFFKPFEHG 208
                      ********************************************************************************************** PP

                      -SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TTST CS
  Cys_Met_Meta_PP 189 aDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekvyYpglp 282
                      +D++vh+aTKy+ Ghsd+ +G+i++++ e +   ++++ + +G    p+d +l  rGl+T+slRl rhq +Alk+A+++e+ ++ve+v +p+lp
       CTQ28156.1 209 VDVSVHAATKYIVGHSDAQMGLITTNK-ETWLA-IRRFIYLFGLHAAPDDVYLAQRGLRTMSLRLGRHQDSALKIAKWFEEREEVEQVLHPALP 300
                      ************************999.55555.56788******************************************************* PP

                      TSTTHHHHHHHSSSG-SEEEEEESSHH..HHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHH CS
  Cys_Met_Meta_PP 283 shpqhelakkqlkgaggvlsFelksee..ekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiEdvdDli 374
                      s+p+he++k++++g++g++s  lk +   e+++kf+d+l+ f +  s+Gg+esl++ p     ++ ++e +  +  + +  Rl +G+Ed  Dl+
       CTQ28156.1 301 SCPGHEIWKRDFTGSSGLFSVVLKPHYskESVEKFIDSLQYFGIGFSWGGFESLAI-PFNP--RKDRPEYHWPY--EGHSFRLQIGLEDPVDLV 389
                      ************************9888899***********************86.4333..22334444333..44678************* PP

                      HHHHHHH CS
  Cys_Met_Meta_PP 375 aDlkqal 381
                       Dl+qal
       CTQ28156.1 390 RDLDQAL 396
                      ******9 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.8e-06     0.059      30     304 ..      79     346 ..      71     350 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.8e-06
                      HHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHH....HHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEEEEB- CS
  DegT_DnrJ_EryC1  30 kafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvata....navlelgakpvfvDvdpdtynidpaaieaaitertkaIlpVh 119
                      ka+a+  g   ++ v +G aA   aL al v+ gd ++v s  +  t     n+ +++g  + f D ++       + i ++ +e+t  +++  
       CTQ28156.1  79 KALAELEGGYRSLLVPTGLAACTSALLAL-VKSGDHILVSSSVYGPTRgfvnNVLAKMGVSATFFDPTIG------DGIGQLFQENTTVVFTES 165
                      67788888888888889999999999887.6668999999988888861111444455666666666643......568999999999999999 PP

                      GGGB--...-HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BT.TSSS.-SSS-..EEEEESTHHHHHHHHHHHBTTCECCT CS
  DegT_DnrJ_EryC1 120 lyGqva...dmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyp.tKnl.ttGeG..GavvtndeelaekarvlrnhGlkrka 206
                        +q +   d++a++++a++h+ kvi D   A    +k      ++    +S ++ tK +    ++  G+++tn e    + r +  +Gl+ + 
       CTQ28156.1 166 PGSQTFdiqDIPAITRVAHAHNAKVIIDNTWATPLFFKP-----FEHGVDVSVHAaTKYIvGHSDAqmGLITTNKETWLAIRRFIYLFGLHAAP 254
                      99988733356788999********************98.....66666778775277776444444499999999999999999******999 PP

                      CSSCECCSS---B-B-BHHHHHHHHHHHC..THHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSSSEEESCEEEEEHCCHH.HCHHHHHHHH CS
  DegT_DnrJ_EryC1 207 ekryvgevelGynyrlteiqAAiglaqLe..rldelvarRreiaelykeeLaelegtaelttpketkkhawhlyavlveeeae.vkrdelveal 297
                      ++ y  +        l  ++  +g++q +  ++ ++ ++R+e+ ++++ +L +++g +  + + +    +  l+ v+++ +    ++++++ +l
       CTQ28156.1 255 DDVYLAQR------GLRTMSLRLGRHQDSalKIAKWFEEREEVEQVLHPALPSCPGHEIWKRDFTG---SSGLFSVVLKPHYSkESVEKFIDSL 339
                      99999999......5777888888888662256799*******************96443333333...4444444444444435799999999 PP

                      HHCCEE- CS
  DegT_DnrJ_EryC1 298 keegigt 304
                      +  gig+
       CTQ28156.1 340 QYFGIGF 346
                      8888775 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   6.2e-05      0.37     131     179 ..     149     197 ..      95     222 .. 0.74
   2 ?   -3.7   0.0      0.71   4.2e+03     272     327 ..     280     335 ..     277     338 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 6.2e-05
                  GHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTT CS
  Aminotran_5 131 elekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqa 179
                   + +l +e+t +v+     + t  iq++++i+++a++++a v++D + a
   CTQ28156.1 149 GIGQLFQENTTVVFTESPGSQTFDIQDIPAITRVAHAHNAKVIIDNTWA 197
                  456788999999999999999999*********************8655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.71
                  HHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEE.TTCSHHHHHHH CS
  Aminotran_5 272 gleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnf.kgvhaedvatl 327
                  ++++  ++ +e  + l+ +l s pg ++ + ++   +++++s+++ + ++ e v+++
   CTQ28156.1 280 KIAKWFEEREEVEQVLHPALPSCPGHEIWK-RDFTGSSGLFSVVLkPHYSKESVEKF 335
                  677778888899999999999999999977.67788888888888334445556655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3000.59
//
Query:       CTQ28157.1  [L=303]
Description: HTH-type transcriptional regulator MetR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-28   99.1   0.0    3.5e-28   98.4   0.0    1.3  1  LysR_substrate  LysR substrate binding domain
    5.6e-18   64.6   1.5    9.5e-18   63.9   1.5    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.045   13.6   0.4       0.11   12.4   0.4    1.7  1  HTH_5           Bacterial regulatory protein, arsR family
      0.069   13.2   1.0       0.15   12.1   1.0    1.5  1  HTH_20          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.0   7.7e-32   3.5e-28       4     208 ..      93     296 ..      91     297 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 7.7e-32
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsl 98 
                      +g Lri+   +++  +l p++ +fr++  eve+++  g +++ + ll++ ++D+ai+ + ++ + +++  L+++++v++++++hpL r+  +++
      CTQ28157.1  93 KQGALRITLECHTCYGWLLPVMDEFRKKWSEVEIDILPGFQPDPIGLLLQDRADVAIVDETEQTDLVRYSSLFKYEMVAILANEHPLTRKPWLEA 187
                     79****************************************************************************************777** PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrel 193
                     ed+++e li++  +    dl +++l+ ag+++r+  +++ + a+++ va   Gia lp +av+++l+   + a  + e  l +e++l++  +   
      CTQ28157.1 188 EDFRGESLITYAVPDERIDLCRKVLKPAGIPIRR-KTTELTMAIIQQVACQRGIAALPIWAVSEYLEKKYVTAKSITENKLISEVWLATLTENID 281
                     ******************************8888.99*****************************************9999***********99 PP

                     HHHHHHHHHHHHHHH CS
  LysR_substrate 194 spavrafidflreal 208
                        v +fi f r+++
      CTQ28157.1 282 KGYVNDFIGFTRQRC 296
                     99*******999986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   1.5   2.1e-21   9.5e-18       1      60 []       7      66 ..       7      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 2.1e-21
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l++l++++a+ ++gs+trAA ++ l+q+a+s+qik+LEe+ +v+Lf R++  ++ T aGe
  CTQ28157.1  7 LKHLQTLLALRKTGSLTRAAAAMQLTQSALSHQIKQLEEHYNVTLFMRKTSPVKFTLAGE 66
                689*********************************************999*******97 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   2.5e-05      0.11      22      41 ..      26      45 ..      10      46 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.5e-05
                HHHHTS-HHHHHHHHHHHHH CS
       HTH_5 22 aeelglsqstvShHLkkLre 41
                a++++l+qs++Sh+ k+L+e
  CTQ28157.1 26 AAAMQLTQSALSHQIKQLEE 45
                6899**************98 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.0   3.4e-05      0.15      20      51 ..      15      46 ..       7      48 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.4e-05
                STCTTB-HHHHHHHHTS-HHHHHHHHHHHHHC CS
      HTH_20 20 araegltaselaerldlskntlsyHLrvLeea 51
                a ++  +++  a++++l+++ ls+++++Lee+
  CTQ28157.1 15 ALRKTGSLTRAAAAMQLTQSALSHQIKQLEEH 46
                66888899999*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2431.87
//
Query:       CTQ28158.1  [L=174]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-13   48.9   1.1    6.9e-13   48.9   1.1    1.7  2  PEMT        Phospholipid methyltransferase
    5.9e-07   29.8   1.2    9.3e-07   29.2   0.3    1.8  2  ICMT        Isoprenylcysteine carboxyl methyltransferase (ICM
    5.4e-05   22.1   0.0    6.8e-05   21.8   0.0    1.1  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
  ------ inclusion threshold ------
      0.018   14.6   0.2      0.021   14.3   0.2    1.3  1  DUF1295     Protein of unknown function (DUF1295)
      0.024   14.9   0.0      0.038   14.3   0.0    1.2  1  DUF4375     Domain of unknown function (DUF4375)
          4    7.5   6.1       0.64   10.0   0.6    2.5  2  OppC_N      N-terminal TM domain of oligopeptide transport pe
        4.9    6.8   9.4        2.2    7.9   6.9    1.6  1  PRA1        PRA1 family protein


Domain annotation for each model (and alignments):
>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1         2   5.2e+03       7      19 ..      19      31 ..      15      42 .. 0.51
   2 !   48.9   1.1   2.7e-16   6.9e-13       2     104 ..      45     147 ..      44     149 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2
        PEMT  7 lllialglllvls 19
                ll+++++++ ++ 
  CTQ28158.1 19 LLCLLINIWARWP 31
                3344444444444 PP

  == domain 2  score: 48.9 bits;  conditional E-value: 2.7e-16
        PEMT   2 rlilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvllvylialkfvEephlak 100
                 r+  +l+   + l+l+l+ + +l  ++t+++    e ++ lvt+G +r+++nP y+g +   ++laL+ +s+ gl+++ +++l+  i+ + vEe  +++
  CTQ28158.1  45 RVCTALVTGGISLVLSLTGLVTLISNQTTLNALHPERTSMLVTRGCFRFSRNPVYLGFIGLHIALALLLSSVIGLMITPFLILLLSILHIQVEEAGMQQ 143
                 677788888999999999**************9888888***************************************9999999999999******** PP

        PEMT 101 iYgk 104
                 ++g+
  CTQ28158.1 144 LFGR 147
                 **97 PP

>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.2     3e+03       3      25 ..      20      42 ..      17      58 .. 0.68
   2 !   29.2   0.3   3.6e-10   9.3e-07      30      93 ..      80     142 ..      49     143 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.2
        ICMT  3 llvllaqalrlvvmatlGeiwtt 25
                l++l+    r+  ++++ e++t 
  CTQ28158.1 20 LCLLINIWARWPILMHIDEVFTI 42
                34566666677777777777764 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 3.6e-10
        ICMT  30 lpdhklvksglykylrHPnYllfvilelatllLlcnakltalvllalvalllf.vRikeEekaLa 93 
                 + +  lv++g +++ r P Yl+f+ l +a +lLl +   + l+++++ +lll    i+ Ee+ ++
  CTQ28158.1  80 ERTSMLVTRGCFRFSRNPVYLGFIGLHIALALLLSSV--IGLMITPFLILLLSiLHIQVEEAGMQ 142
                 567789**********************999999998..*************99*******9886 PP

>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.7e-08   6.8e-05     338     427 ..      72     160 ..      66     166 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.7e-08
  ERG4_ERG24 338 kllkyiqtktGskLlvsGWyglarkinYlgDw..lqslswsLatgfqsvlpyfyvlyFlvlLvhRelRDeekCkkkYGedweeYkkkvpyki 427
                 ++l+ ++ ++ s L++ G ++++r++ Ylg +   ++l+  L++ +  +++ f +l   +l  h  + +e+  ++ +G++weeY+ + p  +
  CTQ28158.1  72 TTLNALHPERTSMLVTRGCFRFSRNPVYLGFIglHIALALLLSSVIGLMITPFLILLLSIL--HI-QVEEAGMQQLFGRQWEEYCNNTPRWF 160
                 56788899999******************95411344445555555555555555544444..43.4567889999*********9988554 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   8.4e-06     0.021     122     233 ..      54     154 ..      17     156 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.4e-06
     DUF1295 122 viglalwlvgivlealaDqQlsafkkdpankgkvldsGLwrysRHPNYfgealiWwglflialealeglealaiagpllltlllvfvsgipllEkkalk 220
                  i+l+l l+g+v  +   +Q +    +p+    ++++G +r+sR P Y+g + + ++l l+  +++      +++ p l+   l+ +  i + E+ +++
  CTQ28158.1  54 GISLVLSLTGLVTLI--SNQTTLNALHPERTSMLVTRGCFRFSRNPVYLGFIGLHIALALLLSSVI-----GLMITPFLIL--LLSILHIQVEEAGMQQ 143
                 466666666666544..4455555568998888****************97776666666544442.....2345554443..3333346677877877 PP

     DUF1295 221 kykdkeeyreYqk 233
                  ++   +++eY +
  CTQ28158.1 144 LFG--RQWEEYCN 154
                 776..66777765 PP

>> DUF4375  Domain of unknown function (DUF4375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.5e-05     0.038      11      45 ..     126     160 ..     123     167 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHHHHHHHHHCT-HHHHCCHHHHH CS
     DUF4375  11 llavnelesevnnGGfvqlfqnssgefinealkal 45 
                 +l++++l+ +v++ G++qlf +++ e++n + + +
  CTQ28158.1 126 ILLLSILHIQVEEAGMQQLFGRQWEEYCNNTPRWF 160
                 78999***********************9988755 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.6       1.4   3.7e+03      22      33 ..      17      28 ..      16      36 .. 0.49
   2 ?   10.0   0.6   0.00025      0.64       9      39 ..      92     124 ..      86     141 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
      OppC_N 22 illlllliaifa 33
                +lll lli i+a
  CTQ28158.1 17 LLLLCLLINIWA 28
                233333344444 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00025
      OppC_N   9 rFkrNk..lAvvglvilllllliaifaPliaPy 39 
                 rF rN+  l ++gl i l+lll ++++ +i+P+
  CTQ28158.1  92 RFSRNPvyLGFIGLHIALALLLSSVIGLMITPF 124
                 89999844588****************999996 PP

>> PRA1  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.9   0.00086       2.2      50     129 ..      50     133 ..      40     145 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00086
        PRA1  50 lllslltnplslivllllvlawlflyflr...seplv.lfgrelsdrvvlivllvvsvlllfltgavlvllwalliglllvllH 129
                 l+  ++   lsl  l++l++  + l+ l+   ++ lv +++ ++s++ v+++++ + ++l +l+++v+ l+++ ++ lll +lH
  CTQ28158.1  50 LVTGGISLVLSLTGLVTLISNQTTLNALHperTSMLVtRGCFRFSRNPVYLGFIGLHIALALLLSSVIGLMITPFLILLLSILH 133
                 444444445555555555555666666555545555526999******************************999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1296.17
//
Query:       CTQ28159.1  [L=439]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-55  186.8  31.1    5.3e-55  186.8  31.1    2.0  2  MFS_1     Major Facilitator Superfamily
    9.5e-10   37.9  28.3    2.6e-07   29.9   6.7    2.1  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.8  31.1   5.9e-59   5.3e-55       2     349 ..      32     393 ..      25     396 .. 0.82
   2 !    3.6   6.3    0.0029        26     129     176 ..     386     434 ..     384     438 .. 0.73

  Alignments for each domain:
  == domain 1  score: 186.8 bits;  conditional E-value: 5.9e-59
       MFS_1   2 llaaflsalarsilgpalpl.alaed..lgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqG 96 
                 ++++ +++l+r ++++++   +  ++  l+  p  +gll++l+ + +++a+++l++l+d +G+rr +l+++++ +l+ll++ + ss++ +ll  r+l G
  CTQ28159.1  32 FVSLSIIYLDRVNISIIAANtHFLNEmhLNDKPILVGLLMSLFLASYGIANVFLSPLGDYIGPRRAMLIAYVVISLSLLIGGL-SSFFaILLGTRILLG 129
                 56666777777777777766666666334466777******************************999999999999677778.*************** PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee....... 188
                 +g+g+++p+ +++i  wfp  ergra+  + +g sl+++l+++l  ++++  +Wr +fy+   ++ll +vl++++    p e+k ++  e+        
  CTQ28159.1 130 IGEGLYYPMQNTIIKNWFPAGERGRANTAWILGQSLAPALAMPLYTWIIAEHSWRHTFYFSFSLTLLPIVLIYFFTSNFPQENKYVNVLELQkinkstt 228
                 **********************************************************************96677655555555555555535565555 PP

       MFS_1 189 ......kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllal 281
                       ++ ++ ++v+  k  l +  +will+++ ++++  +g++t+lp+yl++ +g+s +  +g+++al++++g+ +++lag+++d++ r    ++++
  CTQ28159.1 229 eevlhkNSSEKISVVERAKVYLCNSNFWILLAVFSSNSMLSWGVVTWLPTYLNTERGFS-WANVGWMSALPFIFGLLFKVLAGFIVDKTDR--KGMVMF 324
                 555444333333344467888888889********************************.****************************775..444444 PP

       MFS_1 282 lllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfn.tagslgg 349
                 ++++l+a++++   ++ s+ +++++++ +G+ ++++  p++++l+++++p+e++ +a+g+ n +a ++g+
  CTQ28159.1 325 VSAMLCAASILTGVNI-SNNFFAAIVISFGIgASSMQLPCVFTLLQSMVPAEAMSSAAGALNgMAVGFGA 393
                 4444444444444444.677777788999**777777*************************88888876 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0029
       MFS_1 129 gfslGa.ilgpllgglla.sslgWravfyilaivsllafvlfllllpeep 176
                 g+++G+ +l p+l g+++    ++  v+yil ++ ++++++  ll+ +++
  CTQ28159.1 386 GMAVGFgALSPVLIGFILsVTHNFYFVMYILIGIVVIGGLF-SLLFSRDR 434
                 55667768999999999955555999988888888888884.55555554 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   6.7   2.9e-11   2.6e-07      44     191 ..      63     204 ..      43     213 .. 0.87
   2 !   13.9  13.5   2.1e-06     0.019      43     182 ..     266     425 ..     219     433 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 2.9e-11
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 + +l+gl++s+fl+   i  +f+++lgd++G + ++lia v+ + + ++ +++     + +l+  R+l+Gig Gl + +  + i+   p+  Rg+    
  CTQ28159.1  63 KPILVGLLMSLFLASYGIANVFLSPLGDYIGPRRAMLIAYVVISLSLLIGGLSS---FFAILLGTRILLGIGEGLYYPMQNTIIKNWFPAGERGRA--- 155
                 35899*************************************************...78888888*****************************97... PP

                 HHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS CS
    Sugar_tr 143 yqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllfl 191
                  ++a+++G+ +a  + + l   + ++  wr ++++++ ++ll ++l++f+
  CTQ28159.1 156 -NTAWILGQSLAPALAMPLyTWIIAEHSWRHTFYFSFSLTLLPIVLIYFF 204
                 .568888888888888877666666789**************99999886 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.1e-06
                 H.......................HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHH CS
    Sugar_tr  43 e....................ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasv 121
                 +                    s   +g++ ++ ++ +++  ++ag+++d+ +Rk   ++++++++++++l+++          +++ +++ +g+G+ s+
  CTQ28159.1 266 SmlswgvvtwlptylntergfSWANVGWMSALPFIFGLLFKVLAGFIVDKTDRKGMVMFVSAMLCAASILTGVNI-----SNNFFAAIVISFGIGASSM 359
                 05555555555555555555566778999999999999999*******************************998.....5567778999999999998 PP

                 HHH...HHHHTTS-S.CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.TTHHHHHHHCCHHHHH CS
    Sugar_tr 122 lvP...myisEiApk.klRgalvslyqlaitfGilvaaifglglnktsn.adgwrillglqlvpal 182
                   P   ++++ + p+ ++ +a + l+ +a+ fG l    +g++l+ t+n    + il+g+ ++  l
  CTQ28159.1 360 QLPcvfTLLQSMVPAeAMSSAAGALNGMAVGFGALSPVLIGFILSVTHNfYFVMYILIGIVVIGGL 425
                 77733334555555516679************************9999933333344444333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3409.54
//
Query:       CTQ28160.1  [L=400]
Description: Aminobenzoyl-glutamate utilization protein A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-34  119.5   0.2    1.8e-34  119.3   0.2    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    1.9e-13   50.3   0.1    1.8e-12   47.1   0.0    2.3  2  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.2     2e-38   1.8e-34       2     206 ..      78     390 ..      77     391 .. 0.93

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 2e-38
                    EEEES-BSS.TTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEEE CS
                    xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Peptidase_M20   2 lgsHlDvVp.eeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdavf 95 
                    +++++D++p ee + ++   ++++++ G+++G+G+d++++++l+a+e+l a +d     +gti+l+fqp EEgg +Ga+ +++ gl++ ++++avf
     CTQ28160.1  78 IRADIDALPlEEAN-KF--THASKHK-GCMHGCGHDGHTAMLLGAAELLSANRDF----DGTIHLIFQPGEEGG-AGARVMMNeGLFKLFPCQAVF 164
                    79*******55555.43..7788877.**********************996666....8************88.********777799******* PP

                    EEEEESSSBTCHSTETEEEE............................................................................ CS
                    xxxxxxxxxxxxxxxxxxxx............................................................................ RF
  Peptidase_M20  96 elhieepgileagklaigvv............................................................................ 115
                    +lh + p +++ g+++ +++                                                                            
     CTQ28160.1 165 ALHNW-PHLPQ-GQMGTKIGpimasgvtfeitvfgkgghaalpqstidpvpvacfivshlqtlisrrmnpldaavltigkieagsspniipseaki 258
                    *****.99999.**99999999************************************************************************** PP

                    ................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSC.EEEEEES.SSBHTHHHH.TTTE.EEEEE CS
                    ................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxx.xxxx.xxxxx RF
  Peptidase_M20 116 ................................kvevelleggapvtlndsplvkalaeaaeelfgek.velivsg.pggtdarff.agip.tvmif 175
                                                    ++ev   +gg+p t n+++ ++++a+ ++e++ge+  ++ v + + ++d++f+ +++p ++ ++
     CTQ28160.1 259 mgtcrtltneaqslildnmqriaisiaeahgaHAEVIIKQGGYPNTNNHPKEARFMAKMMREIVGENnAHDNVLPaMTAEDFGFMlQEVPgAYGWI 354
                    *******************************88999988****99999**************99988788889999*********99999666889 PP

                    ESS.G....GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxx.x....xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 176 gpg.s....glaHspnEyvdledlekgikvlarlle 206
                    g g +    g+ Hs   ++++++le g+ ++++l++
     CTQ28160.1 355 GNGnDalsqGDLHSTSYDFNDKNLELGALFWEKLAR 390
                    977447889**********************99986 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   2.1e-16   1.8e-12       7     106 ..     189     286 ..     187     289 .. 0.94
   2 ?    0.2   0.0     0.076   6.8e+02      61      82 ..     295     317 ..     287     331 .. 0.80

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 2.1e-16
                 EEEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCC CS
   M20_dimer   7 aggkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeilekea 105
                 ++++itv gk+gH++ p+  ++++  ++ ++++l+ + ++    ++l    l+++ ie+Gs++n+ip+ea+   ++R+l +e    +l++++ i+ + a
  CTQ28160.1 189 VTFEITVFGKGGHAALPQSTIDPVPVACFIVSHLQTLISRRM--NPLDAAVLTIGKIEAGSSPNIIPSEAKIMGTCRTLTNEAQSLILDNMQRIAISIA 285
                 699**********************************99977..***************************************9999999998887666 PP

                 S CS
   M20_dimer 106 p 106
                 +
  CTQ28160.1 286 E 286
                 5 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.076
                 EECCE-C.CCCEESSEEEEEEEE CS
   M20_dimer  61 tgiegGs.aknvipdeaeakidi 82 
                  + +gG+ ++n  p ea++   +
  CTQ28160.1 295 IIKQGGYpNTNNHPKEARFMAKM 317
                 55579999*********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3001.27
//
Query:       CTQ28161.1  [L=259]
Description: aldoketo-oxidoreductase, NADP-binding (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-57  194.9   0.0    1.9e-57  194.7   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.7   0.0   1.1e-61   1.9e-57       1     202 [.      15     226 ..      15     248 .. 0.94

  Alignments for each domain:
  == domain 1  score: 194.7 bits;  conditional E-value: 1.1e-61
                   .EEEE-SSS-ST.......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE..--SSSTTSSSS-HHHHHHH CS
  Aldo_ket_red   1 elglGtwqlgsk......eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv..dlrdaeiksglskenires 89 
                   +l+lG +++g +      +  +++ +  l+r+aleaGinffDtA++Y  g+see+ G+al + +++r+e+++atK   ++r++++   ls++ i +s
    CTQ28161.1  15 RLCLGCMSYGEPerlpqpWSLDEKASRPLIRQALEAGINFFDTANIYSGGSSEEITGKALRE-MARRDEIVVATKTffPWRNSPNTGFLSRKAIFQS 110
                   59********9999996666666667777*********************************.********************************** PP

                   HHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHT CS
  Aldo_ket_red  90 leeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeegllelckkk 182
                   +++sl rLg dyvDl+++Hr d+s+p +ee+++al+++vk+Gk+r+iG S+ ++++  k+    ++ + +++++ q +ynll ++ee+++l+lc+++
    CTQ28161.1 111 IDDSLMRLGMDYVDLFQIHRFDYSTP-VEETMEALHDVVKAGKARYIGASSMEAWRFAKMqhtaERNGWTRFITMQPQYNLLYREEEREMLPLCEDQ 206
                   **************************.**************************9999999999999******************************* PP

                   T-EEEEBSTTGGGTTGTTTS CS
  Aldo_ket_red 183 gvpliaysplggGlltgkyq 202
                   gv++i++sp+++G lt+ + 
    CTQ28161.1 207 GVGVIPWSPMARGRLTRDWS 226
                   ***************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2018.76
//
Query:       CTQ28162.1  [L=113]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-32  113.5   0.0    1.2e-32  113.3   0.0    1.0  1  GrpB      GrpB protein


Domain annotation for each model (and alignments):
>> GrpB  GrpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   0.0   6.6e-37   1.2e-32       3     107 ..       7     112 ..       5     113 .] 0.96

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 6.6e-37
                 --BS--THHHHHHHHHHHHHHHHH...E.EEEEESGGGSTT--B-S-EEEEEEES-SGGGGGGHHHHHHTT-EE.-TTTTSTTEEEEEE-SSS..--EE CS
        GrpB   3 elveydpeWpeqferekarlraal...i.sieHiGSTsvpglaAKpiiDilvvvedledeeelveaLeaagyellrgepgiperrlfvkgedeeertvh 97 
                 ++v+yd+ Wp+ fe+e++ l+ +l   i +i+HiGSTsvpgl+AKp+iDil++v +le +++l++a+e  gy++ rge+gi +rr+f+kg ++  r +h
  CTQ28162.1   7 TVVDYDEMWPTLFENERTLLQMTLgkvIsRIHHIGSTSVPGLSAKPVIDILIEVVNLEGLDSLNRAMEGVGYTV-RGENGILNRRYFTKGGNQ--RSHH 102
                 89************************9779*******************************************9.9**************887..89** PP

                 EEEEETT-HH CS
        GrpB  98 lhvveagspe 107
                 +h + +g+++
  CTQ28162.1 103 IHAFTTGDAQ 112
                 *****99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 883.46
//
Query:       CTQ28163.1  [L=416]
Description: Phosphoglycerate transport system transcriptional regulatory protein PgtA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-27   95.3   0.0    6.8e-27   93.9   0.0    1.8  2  Response_reg     Response regulator receiver domain
    8.7e-18   64.8   0.0    1.3e-17   64.2   0.0    1.3  1  Sigma54_activ_2  Sigma-54 interaction domain
    2.3e-10   40.1   0.6    7.2e-10   38.5   0.4    1.9  2  HTH_8            Bacterial regulatory protein, Fis family
    2.8e-09   36.9   0.0    1.8e-06   27.7   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
     0.0053   17.2   0.0        2.5    8.6   0.0    2.5  2  DUF4350          Domain of unknown function (DUF4350)


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   1.9e-30   6.8e-27       1     111 [.       8     117 ..       8     118 .. 0.98
   2 ?   -3.2   0.0       2.5     9e+03      55      76 ..     176     196 ..     175     214 .. 0.72

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 1.9e-30
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l++dDd +v+++ +qlle++gy +v +++++ +a e++ +++++++l D+ mpg++G++l++  +++d+ lp++++t+h++ ++avea+k ga df
    CTQ28163.1   8 ILLIDDDADVLDAYTQLLEQAGY-HVSACNNPFDAREQVPKDWPGIVLSDVCMPGCSGIDLMTLFHQDDDLLPILLITGHGDVPMAVEAVKKGAWDF 103
                   89*********************.************************************************************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l+Kp+dp +Ll+ +
    CTQ28163.1 104 LQKPIDPGKLLTLV 117
                   **********9876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.5
                   SSEHHHHHHHHHHCTTTSEEEE CS
  Response_reg  55 gmdGlellkeireedpelpvii 76 
                   +m+G + l ++ ++  e p i+
    CTQ28163.1 176 RMTGARYLHQLGRHA-EGPFIA 196
                   689999999998887.455444 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   3.7e-21   1.3e-17       1     132 [.     143     277 ..     143     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 3.7e-21
                      X---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHH....H-HHHHHHHTTTSEEEEEE-TT--HHHHHHHH CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverla....klpldlleqakggtLylkdiadlskaeqkeLl 90 
                      +g+s+   + ++rL+q+a+    v+l Ge+G+g  + Ar+Lh+ +     +f+  +l     +   +l++qa+ggtL+l   ++l  ++q +L 
       CTQ28163.1 143 IGRSQWTVRYRQRLQQLAETDIAVWLYGEPGTGRMTGARYLHQLGRHAEGPFIACELTpanaHTLNELIAQAQGGTLVLSHPEHLTHEQQHQLV 236
                      799************************************************99877764444566899999**********************8 PP

                      HHHHHHTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEE CS
  Sigma54_activ_2  91 ellakaeksslrlVstsskdleqlleagafdekLlkeLselr 132
                      + l++ ek   rl+ ++s++l +l++++++ ++L++ +  ++
       CTQ28163.1 237 Q-LQSHEKRPFRLIGIGSASLVELAASSQIVAELYYCFAMTQ 277
                      7.79999****************************8776655 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.87   3.1e+03      12      23 ..      23      34 ..      22      35 .. 0.83
   2 !   38.5   0.4     2e-13   7.2e-10       2      42 .]     366     406 ..     365     406 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.87
                HHHHHTTT-HHH CS
       HTH_8 12 aALertgGnksk 23
                + Le++g+++s+
  CTQ28163.1 23 QLLEQAGYHVSA 34
                679*****9986 PP

  == domain 2  score: 38.5 bits;  conditional E-value: 2e-13
                 HHHHHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHT CS
       HTH_8   2 leevEkelIeaALertgGnkskAArlLGisRrtLyrKLkkY 42 
                 +e+vE+++I++AL+ ++G++ ++A++L i R+ Ly ++kkY
  CTQ28163.1 366 VEDVERQIITEALNIHQGRINEVAEYLLIPRKKLYLRMKKY 406
                 79**************************************9 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   5.1e-10   1.8e-06       1      64 [.     142     205 ..     142     210 .. 0.90
   2 !    7.4   0.1   0.00092       3.3      88     119 ..     210     240 ..     200     278 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 5.1e-10
                      ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TT CS
  Sigma54_activat   1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipee 64 
                      lig+s+ + + +++++++a+td+ v + Ge GtG+ + ar +h+  +++e+pf+a + +  +++
       CTQ28163.1 142 LIGRSQWTVRYRQRLQQLAETDIAVWLYGEPGTGRMTGARYLHQLGRHAEGPFIACELTPANAH 205
                      6889999999*********************************************998766554 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00092
                      HHHHTTTSEEEEETGGGS-HHHHHHHHHHHHH CS
  Sigma54_activat  88 lfekadgGtlfLDeigelplelQekLlrvlqe 119
                      l+ +a+gGtl L   ++l+ e Q++L ++  +
       CTQ28163.1 210 LIAQAQGGTLVLSHPEHLTHEQQHQLVQLQ-S 240
                      789*********************997643.2 PP

>> DUF4350  Domain of unknown function (DUF4350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00068       2.5      11      33 ..      22      44 ..      18      57 .. 0.85
   2 !    5.8   0.0    0.0051        18      29      56 ..     208     236 ..     190     241 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00068
     DUF4350 11 aelLeaqGvevrrvrkpfdaleg 33
                 +lLe++G++v++  +pfda e+
  CTQ28163.1 22 TQLLEQAGYHVSACNNPFDAREQ 44
                589****************9887 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0051
     DUF4350  29 dal.eg.edgtllvvapdlrlteeelaall 56 
                 ++l ++  +gtl++ +p+ +lt+e+  +l 
  CTQ28163.1 208 NELiAQaQGGTLVLSHPE-HLTHEQQHQLV 236
                 455443378899999999.99997766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2930.81
//
Query:       CTQ28164.1  [L=664]
Description: Phosphoglycerate transport system sensor protein PgtB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-16   59.1   0.0    1.1e-15   58.1   0.0    1.6  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    1.6e-07   31.3   0.3    1.6e-07   31.3   0.3    4.1  4  HisKA         His Kinase A (phospho-acceptor) domain
    2.4e-06   27.8   1.5    1.8e-05   25.0   0.2    3.3  2  HAMP          HAMP domain
    0.00076   19.4   0.0     0.0019   18.2   0.0    1.7  1  HATPase_c_2   Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.023   14.6   0.0      0.088   12.7   0.0    1.9  2  HATPase_c_5   GHKL domain
      0.033   13.8   0.1      0.033   13.8   0.1    3.2  4  4HB_MCP_1     Four helix bundle sensory module for signal tra
      0.046   13.5   0.0       0.13   12.1   0.0    1.7  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
          1    9.5   9.6        0.1   12.8   1.5    2.5  2  MnmE_helical  MnmE helical domain
        1.3    9.1  10.5        2.3    8.3   0.3    2.9  3  SPATA1_C      Spermatogenesis-associated C-terminus
        4.5    7.3   6.4        9.4    6.3   0.2    3.2  3  SOAR          STIM1 Orai1-activating region


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   6.3e-19   1.1e-15       1     110 [.     553     657 ..     553     659 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 6.3e-19
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETT CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepg 99 
                 gde r++q++ n+++Na+++ ++a +i+v+ + + ++l++ + DnG+G p + l+ l ++f++     +++ g G+Glsi+ +l+++m+G +++ s+ +
  CTQ28164.1 553 GDEVRVHQVLVNVLSNALDACPHAAQITVSWQIQGGRLCVLIADNGPGWPAALLPSLLKPFTT-----SKTVGLGIGLSICVSLMTQMEGALRLASTFT 646
                 79******************999999*999997679***************************.....8889***********9999*******99999 PP

                 TEEEEEEEEES CS
   HATPase_c 100 rGttftftlpl 110
                 r  ++++++ l
  CTQ28164.1 647 RSACVVLEFNL 657
                 99999988766 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.3   2.3e+03      32      53 ..     103     124 ..      72     135 .. 0.70
   2 ?   -2.7   3.8       3.4   6.1e+03      35      35 ..     228     228 ..     171     276 .. 0.57
   3 ?   -2.5   0.1         3   5.5e+03      31      55 ..     304     332 ..     286     333 .. 0.62
   4 !   31.3   0.3   8.8e-11   1.6e-07       3      64 ..     445     508 ..     444     511 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.3
                 T-HSSCHHHHHHHHHHHHHHHH CS
       HisKA  32 klteelkeyletiesearrldh 53 
                  l++  +++l +i + +r l++
  CTQ28164.1 103 GLSPAERQQLGVILQDSRALLA 124
                 4667777777777777775554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.4
                 S CS
       HisKA  35 e 35 
                  
  CTQ28164.1 228 G 228
                 0 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3
                 .T-HSSCHHHHHHHHHHHH....HHHHHH CS
       HisKA  31 gklteelkeyletiesear....rldhlv 55 
                 g+ +  l+++l + +++ +    r+ ++v
  CTQ28164.1 304 GRFRTLLEAQLGSSHQQMQmfnqRMAQIV 332
                 44566666677777777777777888777 PP

  == domain 4  score: 31.3 bits;  conditional E-value: 8.8e-11
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC....T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkre..gklteelkeyletiesearrldhlvedlLdlsri 64 
                 g+ + ++aHE+++PL+a+++++ +  r   +   e+ +  l ++e  ++r+d+++  l++++r 
  CTQ28164.1 445 GQTMTTLAHEINQPLNALSMYLFTAGRAieQGQAEQARTTLSKAEGLINRIDAIIRSLRQFTRR 508
                 567889*******************998774445777778888888888************986 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.2   9.9e-09   1.8e-05       1      52 [.     357     408 ..     357     409 .. 0.94
   2 ?   -1.5   0.1       1.9   3.4e+03       6      17 ..     498     509 ..     495     510 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 9.9e-09
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 ++  r++++   L +a+ +i+ G+ ++++pv+grDE+G++a  +++ l +L+
  CTQ28164.1 357 FIRSRLVKRFTALNQAVVQIGLGRTEATIPVYGRDELGRIAGLLRHTLGQLN 408
                 68899*************************************9999999987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.9
                 THHHHHHHHHHH CS
        HAMP   6 ilrPLrrLaraa 17 
                 i+r+Lr+ +r a
  CTQ28164.1 498 IIRSLRQFTRRA 509
                 777888777766 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     1e-06    0.0019      39     109 ..     561     632 ..     541     638 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1e-06
  HATPase_c_2  39 actNavehayleap.egpvevrlesdeealtvevaDsGpgfdpetlpdpteeepkeslkegGrGlalikglv 109
                  +++N+   a + +p  ++++v++++++++l+v +aD+Gpg++++ lp   ++  + +    G+Gl +  +l+
   CTQ28164.1 561 VLVNVLSNALDACPhAAQITVSWQIQGGRLCVLIADNGPGWPAALLPSLLKPFTTSKTVGLGIGLSICVSLM 632
                  57899999999999899*************************999988877765555555566666666666 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         4   7.2e+03      34      57 ..     194     218 ..     176     230 .. 0.61
   2 ?   12.7   0.0   4.9e-05     0.088       7      87 ..     559     641 ..     554     647 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4
  HATPase_c_5  34 tvrekkksliisieNsyegek.kkl 57 
                  + ++++  ++ +ieN++ ++  ++l
   CTQ28164.1 194 QNEQQQVYTLARIENQIVDDLrDRL 218
                  4444555567788888877663333 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4.9e-05
  HATPase_c_5   7 cvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg.......ekkklesskskkeehGiGlksireivkkykgnlsi 87 
                    +l n+L NA++ac +       I+++ + + + l++ i  +  g       +  k ++ +sk+   GiGl+   +++ + +g+l++
   CTQ28164.1 559 HQVLVNVLSNALDACPHAA----QITVSWQIQGGRLCVLIADNGPGwpaallpSLLKPFT-TSKTVGLGIGLSICVSLMTQMEGALRL 641
                  67999**********9988....6*********998888877777745544333333333.556789999*99999999999998875 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.8e-05     0.033       2      94 ..       8     100 ..       7     104 .. 0.95
   2 ?   -1.8   0.2       1.1     2e+03      51      97 ..     116     160 ..     114     209 .. 0.67
   3 ?   -2.2   0.5       1.4   2.5e+03      33      90 ..     193     251 ..     186     255 .. 0.62
   4 ?   -1.1   0.4      0.67   1.2e+03     104     104 ..     438     438 ..     397     507 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
   4HB_MCP_1   2 lkirkKLillflllallliivGvvGlyslkkinknletmYedrllpikdlgeikanlrelradlleliltkdkaekdellkdieeleaeidkl 94 
                 ++i++ L  +fl+ all++iv++v+lys +  +++++    +    i     i+ nl+ +  +l e +l+ ++  + +l ++i ++ ++i+ l
  CTQ28164.1   8 ISISSSLRGAFLTGALLTLIVSSVSLYSWHEQSSQIRYSLDEYFPRIHAAFLIEGNLNLVVDQLNEFLLAPNTTVRLQLRNQIIQHLDKIERL 100
                 578999999**************************************************************************9999999876 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
   4HB_MCP_1  51 lgeikanlrelradlleliltkdkaekdellkdieeleaeidkllek 97 
                 l++ +a l+el + l+++ l   +++  el+++i+ l +++ ++l++
  CTQ28164.1 116 LQDSRALLAELDRVLYNMFLV--REKVGELAARIDWLHDDFTTELNS 160
                 667777777777777777777..666777777776555555554443 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.4
   4HB_MCP_1  33 inknletmYedrllpikdlgeikanlrelradlleliltkdkae.kdellkdieeleae 90 
                 ++++ +++Y+   +  +++ ++++ l+el++   + +l +++ +  ++l+k+ +e+ + 
  CTQ28164.1 193 VQNEQQQVYTLARIENQIVDDLRDRLNELKSGNDDGMLVETHIRyLENLKKTADENIRA 251
                 56666677777777777777777777777776666666655544355555555666555 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.67
   4HB_MCP_1 104 t 104
                 t
  CTQ28164.1 438 T 438
                 1 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.1e-05      0.13       3      62 ..     558     618 ..     556     629 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.1e-05
  HATPase_c_3   3 lekAlaelvdNsldAdaenvkievnknr.gktgeivieDdGkGmseeelknalrlatsske 62 
                  ++++l+ ++ N+ldA  +  +i+v+ +  g    + i D+G G + + l + l++ t+sk+
   CTQ28164.1 558 VHQVLVNVLSNALDACPHAAQITVSWQIqGGRLCVLIADNGPGWPAALLPSLLKPFTTSKT 618
                  5789**********976666666664431556777799*****999988888888777765 PP

>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.5   5.6e-05       0.1      79     188 ..      88     271 ..      65     277 .. 0.73
   2 ?    0.6   0.7      0.31   5.6e+02     148     185 ..     397     435 ..     394     446 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.6e-05
                   xxxxxxxxxxxxxxxxxx............................................................................xxx RF
  MnmE_helical  79 ekllatakrgellreGik............................................................................Dll 99 
                   ++++++ ++ e+l++G++                                                                            D  
    CTQ28164.1  88 NQIIQHLDKIERLSQGLSpaerqqlgvilqdsrallaeldrvlynmflvrekvgelaaridwlhddfttelnslvqdftwqqgtlldqiearqgD-- 182
                   45666666667788888888888888889999999999999999999999999999999999999999999999998888888888666555554.. PP

                   xxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
  MnmE_helical 100 keke..........ekeeeevlkiSaktgegieeLeeaikeleleeieeeplltnaRhkealekalealeeakealeaglpldlv..aedLrealea 184
                      +          ++e+++v +++  +++ +++L+++++el++++  + + +  + h+  le+ ++  +e ++al      d +  ++ Lr+++++
    CTQ28164.1 183 ---ArqylkrarevQNEQQQVYTLARIENQIVDDLRDRLNELKSGN--D-DGMLVETHIRYLENLKKTADENIRAL------DDWpsTITLRQTIDE 267
                   ...0445558888766677777777778788********9977533..3.33444455556666555555222332......333349999999999 PP

                   xxxx RF
  MnmE_helical 185 LgeI 188
                   L eI
    CTQ28164.1 268 LLEI 271
                   9998 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.31
                   xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
  MnmE_helical 148 kealekalealeeakealeag.lpldlvaedLrealeaL 185
                     +l+++l +l++ k++le++  + ++++ dLr+++++L
    CTQ28164.1 397 AGLLRHTLGQLNAQKQQLEQEiGERKAIEADLRATQDEL 435
                   5689999999999999999995589999******99998 PP

>> SPATA1_C  Spermatogenesis-associated C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   1.6    0.0074        13      61     144 ..     157     252 ..     152     254 .. 0.66
   2 ?   -2.6   0.1       2.9   5.3e+03      58      78 ..     310     330 ..     306     333 .. 0.83
   3 ?    8.3   0.3    0.0013       2.3     118     150 ..     405     437 ..     398     439 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0074
    SPATA1_C  61 elkkLrqelellykkllaqlkardnkkkeknvakse.elkneliiqiiaaqhe.idelkrkledak......mklvaElk....lRkqaaeelkaL 144
                 el++L q+   +   ll q +ar+   ++  ++  e + + +++  +++ +++ +d+l+++l++ k      m + + ++    l+k a+e+++aL
  CTQ28164.1 157 ELNSLVQDFTWQQGTLLDQIEARQGDARQYLKRAREvQNEQQQVYTLARIENQiVDDLRDRLNELKsgnddgMLVETHIRylenLKKTADENIRAL 252
                 7899999999999**********9955544444433234444556666666553699*******99777766444444432222566666666665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.9
    SPATA1_C  58 LeeelkkLrqelellykklla 78 
                 Le +l +  q+++++++++ +
  CTQ28164.1 310 LEAQLGSSHQQMQMFNQRMAQ 330
                 888999999999999999954 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0013
    SPATA1_C 118 rkledakmklvaElklRkqaaeelkaLraelsq 150
                  +l+++k +l +E+ +Rk ++++l+a + el q
  CTQ28164.1 405 GQLNAQKQQLEQEIGERKAIEADLRATQDELIQ 437
                 58999***********************99987 PP

>> SOAR  STIM1 Orai1-activating region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2    0.0053       9.4      48      91 ..     159     202 ..     151     210 .. 0.89
   2 ?    2.4   0.1     0.085   1.5e+02      19      81 ..     271     333 ..     259     336 .. 0.82
   3 ?   -0.3   0.2       0.6   1.1e+03      21      77 ..     406     463 ..     401     497 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0053
        SOAR  48 ssllgslrlahssslddvdkkileakqaleevtkelkerqeRWq 91 
                 +sl+  +   +++ ld+++++   a+q l++ ++ ++e+q+ ++
  CTQ28164.1 159 NSLVQDFTWQQGTLLDQIEARQGDARQYLKRAREVQNEQQQVYT 202
                 7899999999******************************9875 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.085
        SOAR  19 lkylnkkkqeaekqlqeAkeeveklkkkrssllgslrlahssslddvdkkileakqaleevtk 81 
                    ++++  ++ +   +A++++    + r+  lg +r +   +l +  ++++   q++ ++ +
  CTQ28164.1 271 IGMVKNNMPDTMRDYVSAQKALVEASRSREATLGRFRTLLEAQLGSSHQQMQMFNQRMAQIVR 333
                 555556666677777889999999999************************999999999875 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.6
        SOAR  21 ylnkkkqeaekqlqeAkeeveklkkkrssllgslrla.hssslddvdkkileakqale 77 
                 +ln++kq+ e+++ e k     l+  +  l+ + +la  ++++  + ++i +  +al+
  CTQ28164.1 406 QLNAQKQQLEQEIGERKAIEADLRATQDELIQTAKLAvVGQTMTTLAHEINQPLNALS 463
                 6788888888888888887778888888888888887667777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1303  (0.0726756); expected 358.6 (0.02)
Passed bias filter:                      756  (0.0421663); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 4640.06
//
Query:       CTQ28165.1  [L=406]
Description: Phosphoglycerate transport regulatory protein PgtC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-34  118.9   0.0    2.8e-34  118.6   0.0    1.1  1  SBP_bac_6   Bacterial extracellular solute-binding protein
    2.1e-21   76.7   0.9    3.6e-21   76.0   0.1    1.7  2  SBP_bac_11  Bacterial extracellular solute-binding protein
    1.1e-12   48.4   0.0    1.4e-12   48.0   0.0    1.2  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    0.00061   19.8   0.0     0.0017   18.4   0.0    1.7  2  SBP_bac_1   Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.0   6.4e-38   2.8e-34       2     230 ..      68     302 ..      67     317 .. 0.90

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 6.4e-38
   SBP_bac_6   2 plpdlilsfdkdflekfieeglfqpldpanlpnvnkdfaeeglkdp.dgkyypygvgplvlavnkdrlkgrpv..PksWaDLldPeykgkvalpgnngs 97 
                 + +dlil+ ++++l++++e++ ++p+    +p v+++     ++++ + + ++++++ ++l++n+++l  r++  P +W+DL+dP+y+g   + ++++s
  CTQ28165.1  68 ENVDLILTSSPMLLQHLQEHQKLAPFS--GAPAVSQH----LVPESiRSTSVAVAISGFGLLMNRSALMTRHLpaPADWDDLTDPRYQGALLMSSPSRS 160
                 568**********************98..99999953....34444577799********************9778*********************** PP

   SBP_bac_6  98 dlfealllalykdfgedgvkkllrnlkanlhpaq..mvkaagslesgepavsvvpyffadilpekkkgknlkvvwPedGalvspifmlvkkg.kkkela 193
                 d++++++  l +++g+ ++++ l   ++nl  +   + + a++ +sg +++  v++ +a++l ++    +l+++++ + ++vsp++++v k+ +++++a
  CTQ28165.1 161 DTNHLMVESLLQQKGWIKGWETLLTTAGNLVTISsrSFGVADKIKSGLGVAGPVIDNYANLLLNDP---HLAFTYFPQ-SAVSPTYVAVLKNsQHASEA 255
                 ******************************************************************...*********.99****************** PP

   SBP_bac_6 194 kafidfllspevqailakagg.vfPvv.........tnpavlnelpe 230
                 ++fi +llspe+q+ila+a+  ++Pv+         +++a l ++p+
  CTQ28165.1 256 RRFIRYLLSPEGQTILADANTgKYPVTplapgnpraAQQAMLMNQPP 302
                 *******************999****987776655544444444444 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.1     8e-25   3.6e-21      16     226 ..      35     273 ..      20     275 .. 0.83
   2 ?   -1.8   0.0      0.46   2.1e+03      42      69 ..     354     381 ..     327     396 .. 0.76

  Alignments for each domain:
  == domain 1  score: 76.0 bits;  conditional E-value: 8e-25
                 HHHHHHHHH-.--EEEEESSHHHHHHHH..HHH..-SEEEESSH.HHHHHHHHGGGGG.................GG-EEEEEEEEEEEESTT-..... CS
  SBP_bac_11  16 laaaFeahtg.vkvevsaggsgklarqi..adgarpDvwipassawlellaaaglvqa.................esavplassplviavpkgn..... 89 
                 +++++++++g v ++   + s+ l + +  a+ + +D+++  s++ l+ l++++++++                 +++v++a+s   +++++++     
  CTQ28165.1  35 IIDRWQKEPGsVMIRTLNRTSASLEQLLdtANAENVDLILTSSPMLLQHLQEHQKLAPfsgapavsqhlvpesirSTSVAVAISGFGLLMNRSAlmtrh 133
                 899*******999999999999988877534444************************************************************77754 PP

                 TT---SHHHHHHSS-..-EEEE--T-TTTTHH.H.HHHGGG--...HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEHHHHH..HSTTSSEEEE CS
  SBP_bac_11  90 pkkikgwadLlkpgl..klavadPttspsGlaal.alleaaga...qellkalekkvvklgessrqlltaveageadagivyeseakaaengdkleavy 182
                    + +w+dL++p     l +++P++s +    + +ll++ g     e+l + +++ v+ +  s  +++ +++g   ag v  + a++  n ++l + y
  CTQ28165.1 134 LPAPADWDDLTDPRYqgALLMSSPSRSDTNHLMVeSLLQQKGWikgWETLLTTAGNLVTISSRSFGVADKIKSGLGVAGPVIDNYANLLLNDPHLAFTY 232
                 236789*******99667*******966666555166666652433334444455666666666889999*********99999999999********* PP

                 --TTT--...EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHH CS
  SBP_bac_11 183 lpeglnldpldypaavlkkaakreaAraFlafLrspeaqailrk 226
                  p++ ++   + ++avlk+++++ +Ar+F+++L+spe+q+il++
  CTQ28165.1 233 FPQSAVS---PTYVAVLKNSQHASEARRFIRYLLSPEGQTILAD 273
                 ******5...444679*************************987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.46
                 HHHH..-SEEEESSH.HHHHHHHHGGGG CS
  SBP_bac_11  42 iadgarpDvwipassawlellaaaglvq 69 
                 ++   ++D  +++++awl++  ++ ++ 
  CTQ28165.1 354 LLTRVPVDPASSEDEAWLAQFDNKSFAE 381
                 4444477777888888888887777665 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   3.2e-16   1.4e-12      19     273 ..      53     290 ..      34     299 .. 0.73

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 3.2e-16
                 --SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH..-HHHHHTT--TS.----EEEEEEE-EEEEEHHHHHHS...---BH CS
   SBP_bac_8  19 aasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnldd..ltdalaavgydgklygvPyasetpyvliynkdlleka..edpktw 113
                   s+ leq l + ++a ++ d++++  +   l+ l e+++la++s  +   +  ++  +++        +v +a++   +l +n ++l       p++w
  CTQ28165.1  53 RTSASLEQLLDT-ANAENV-DLILT-SSPMLLQHLQEHQKLAPFSGAPAVSQhlVPESIRS-------TSVAVAISG-FGLLMNRSALMTRhlPAPADW 140
                 455555554444.555565.55433.33456777777888888886544433333445554.......567778875.67777777776535778**** PP

                 HHHHHHHHHHHHH-SEGG---.GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE-S..--SS.TTTTTSBSEEEE-TTHHHHHH-TTTSE CS
   SBP_bac_8 114 dellaaakklkgkfglpdpas.gwlqaallakdgksldddggkdglkealellkklkdngktydtgadavs.efanGevaftingswdiaaaqkagkkl 210
                 d+l++  + ++g+  ++ p+  ++ + +        l     ++g+ + +e l ++  n +t+++++  v+ ++++G  ++++  +  ++ + + ++ l
  CTQ28165.1 141 DDLTD--PRYQGALLMSSPSRsDTNHLMVES----LLQ----QKGWIKGWETLLTTAGNLVTISSRSFGVAdKIKSGLGVAGPVIDNYANLLLN-DPHL 228
                 *****..********9998851443333222....233....459******************999877777***********98877777766.9999 PP

                 EEE--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHH.HH---BS-S-TTTHHH CS
   SBP_bac_8 211 gaivpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalae.ktgyipvnksaalspe 273
                 ++++ +q s++  +++av+kn+ ++ + A +F+++l+spe+q+ la+ +tg  pv++ a+ +p 
  CTQ28165.1 229 AFTYFPQ-SAVSPTYVAVLKNSQHASE-ARRFIRYLLSPEGQTILADaNTGKYPVTPLAPGNPR 290
                 ***6544.899999************7.*****************************9998775 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.57   2.6e+03     128     139 ..     133     144 ..      30     147 .. 0.49
   2 !   18.4   0.0   3.7e-07    0.0017     269     314 ..     231     268 ..     189     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.57
                 TGGGSHBHHHHH CS
   SBP_bac_1 128 gldppwtWdelv 139
                  l++p  Wd+l+
  CTQ28165.1 133 HLPAPADWDDLT 144
                 344466666665 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3.7e-07
                 EEECEEBETTTTSEEEEEEEEEEBTTCSTHHHHHHHHHHHTSHHHH CS
   SBP_bac_1 269 gvaplPagkggkpgilgayglaipkgsknpeaAkkFldfllspeaq 314
                  ++p  a        ++  ++a++k+s++  +A+ F+++llspe+q
  CTQ28165.1 231 TYFPQSA--------VSPTYVAVLKNSQHASEARRFIRYLLSPEGQ 268
                 4444322........59999************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2915.36
//
Query:       CTQ28166.1  [L=59]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 506.02
//
Query:       CTQ28167.1  [L=463]
Description: Phosphoglycerate transporter protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-47  162.1  38.6    1.1e-46  159.4  32.9    2.0  2  MFS_1      Major Facilitator Superfamily
    0.00015   20.2   2.4    0.00015   20.2   2.4    4.1  4  OATP       Organic Anion Transporter Polypeptide (OATP) famil
  ------ inclusion threshold ------
      0.013   14.3  29.6      0.015   14.1  10.7    3.2  3  LacY_symp  LacY proton/sugar symporter
       0.21   10.9  21.5        2.7    7.2  21.5    2.1  1  MFS_4      Uncharacterised MFS-type transporter YbfB


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4  32.9   2.5e-50   1.1e-46       1     352 [.      34     402 ..      34     403 .. 0.87
   2 !    9.7   1.6   7.9e-05      0.35     128     172 ..     393     435 ..     392     460 .. 0.75

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 2.5e-50
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 ++l+++ +++ r++++++ p +l+e+l +s+++igll ++  ++++++  ++++l+d+ +++ ++ +gl+l a+  + l f++ +w++++l vl Gl++
  CTQ28167.1  34 VFLGYLAYYIVRNNFTLSTP-YLKEQLDLSATQIGLLSSCMLIAYGISKGVMSSLADKASPKVFMACGLVLCAIVNVGLGFSTAFWVFAALVVLNGLFQ 131
                 6999****************.******************************************************66666988899************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslg...Wrav.fyilaivsllafvlfllllpeepperkrkspkeee..... 188
                 g+++  + + ia wfp++ergr+ ++++++ ++G  i++p++g+++a  lg   W+++ +++ a v++++++ +l+l   +p+e++ +s +e       
  CTQ28167.1 132 GMGVGPSFITIANWFPRRERGRVGAFWNISHNVGGgIVAPIVGAAFA-ILGtehWQSAsYIVPACVAVVFAISVLVLGKGSPREEGLPSLAEMMpeekv 229
                 ***********************************777788888888.88889*999979999999999988655666666666666666666588888 PP

       MFS_1 189 ......kgtgpaplvp........awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr 273
                             + +p          +++l+++  w++ ++ +++ ++ +g+ ++lp+yl +v ++s   ++++++ ++  +++++ llag+lsd+l +
  CTQ28167.1 230 vlktkhG-----QKAPenmsafqiFCTYVLRNKNAWYVSFVDVFVYMVRFGMISWLPIYLLTVKHFS-KEQMSVAFLFFEWAAIPSTLLAGWLSDKLFK 322
                 8555442.....333344553445556666666678444444444459999****************.7888888************************ PP

       MFS_1 274 rrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntags.lggalg 352
                  rr+ la+++++l++++l+    ++s +++ ++ +++G+   + + ++ +++++ +p  + g+a+gl +++++ +g++lg
  CTQ28167.1 323 GRRMPLAIICMTLIFICLIGYWKSESLLMVTVFAAIVGCLIYVPQFLASVQTMEIVPSFAVGSAVGLRGFMSYiFGASLG 402
                 ************************9******9*******99999*************************99996777776 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 7.9e-05
       MFS_1 128 agfslGailgpllggllasslgWravfyilaivsllafvlfllll 172
                 +++ +Ga lg  l g++++  gW++ fy+l +  + ++++  ++l
  CTQ28167.1 393 MSYIFGASLGTSLFGVMVDKMGWHGGFYLLMGGIVCCILF--CYL 435
                 56789999999999************99999888888774..444 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.5   0.00047       2.1      11      78 ..      38     106 ..      30     111 .. 0.86
   2 ?    1.0   0.2     0.023     1e+02     458     516 ..     115     173 ..     113     178 .. 0.92
   3 !   20.2   2.4   3.3e-08   0.00015     219     380 ..     190     343 ..     183     346 .. 0.77
   4 !    2.9   3.4    0.0061        27     464     523 ..     350     412 ..     344     416 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00047
                 xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  11 lvq.amvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmal 78 
                  +   +v   f  +   +  + +l+ +++gl++s+  i++ +   + s +++++    ++++g++l+a+
  CTQ28167.1  38 YLAyYIVRNNFTLSTPYLKEQLDLSATQIGLLSSCMLIAYGISKGVMSSLADKASPKVFMACGLVLCAI 106
                 33337777778888888999***********************************************98 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.023
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 458 kklllflillflvsflgalgrvpallvilRcVkkedksfalGlqlllirllgliPgPii 516
                 +++++f +l++l  ++  +g  p++++i    + +++    +++ +  ++ g i +Pi+
  CTQ28167.1 115 TAFWVFAALVVLNGLFQGMGVGPSFITIANWFPRRERGRVGAFWNISHNVGGGIVAPIV 173
                 5799*********************************9999999999999999999997 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 3.3e-08
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 219 flilgvllllaaiplffFPkelpkkkeerakkkseeesaekkeekkkkeksksseeeelkslkdfpkalkrllknpifllvilssvfeillvaGfitFl 317
                 +++ +++++++ai ++++ k  p+++   + ++ ++e+      k   ++++ ++  + ++++ f   +  +l+n+  ++v++  vf +++  G+i +l
  CTQ28167.1 190 YIVPACVAVVFAISVLVLGKGSPREEGLPSLAEMMPEE------KVVLKTKHGQK--APENMSAFQIFCTYVLRNKNAWYVSFVDVFVYMVRFGMISWL 280
                 78899999999*********999999999887776543......22222222222..56779999999999**************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 318 pkylEtqFslsaseAnlltGvvvipgaalGillgGllvkk.lklsakklaklvlvvsllsllll 380
                 p yl t  + s+ + ++ + +++  +a+  +ll+G+l  k +k +   la +++ + +++l+++
  CTQ28167.1 281 PIYLLTVKHFSKEQMSVAF-LFFEWAAIPSTLLAGWLSDKlFKGRRMPLAIICMTLIFICLIGY 343
                 ****986666655555553.36667788899******988356666777888888888888776 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.0061
                 xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 464 lillflvsflgalgrvpall...vilRcVkkedksfalGlqlllirllgliPgPiifGaiiDs 523
                 l++ ++++++g+l  vp++l    ++ +V++     a+Gl  ++  ++g+  g  +fG+++D+
  CTQ28167.1 350 LMVTVFAAIVGCLIYVPQFLasvQTMEIVPSFAVGSAVGLRGFMSYIFGASLGTSLFGVMVDK 412
                 677888889999999999983323567899999999**************************8 PP

>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.3   0.00052       2.3      17     113 ..      38     139 ..      25     146 .. 0.66
   2 ?   14.1  10.7   3.4e-06     0.015       3     122 ..     253     372 ..     251     382 .. 0.76
   3 ?    4.3   0.6    0.0032        14     365     394 ..     402     432 ..     382     449 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00052
   LacY_symp  17 ffyffimsayfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllv....lfapfliyvfepllqln.ilvGalvG 110
                 ++ ++i+   f+l + +lke+l+ls t++G++ s++ +   + + ++  + dk   k  +   + l  +    l      +vf+ l+ ln ++ G+ vG
  CTQ28167.1  38 YLAYYIVRNNFTLSTPYLKEQLDLSATQIGLLSSCMLIAYGISKGVMSSLADKASPKVFMACGLVLCAIvnvgLGFSTAFWVFAALVVLNgLFQGMGVG 136
                 56799999***************************9888777777888888876655443332222222000122223456667666666344555555 PP

   LacY_symp 111 gvf 113
                   f
  CTQ28167.1 137 PSF 139
                 555 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 3.4e-06
   LacY_symp   3 plkntnfylfalffffyffimsayfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkkel.lwvislllvlfapfliyvfepllq 100
                  l+n+n ++ +++ +f +++   + +++p++l  v+++sk ++ + f   +  +i    l G +sdkl   +++ l +i + l++++    +  e ll 
  CTQ28167.1 253 VLRNKNAWYVSFVDVFVYMVRFGMISWLPIYLLTVKHFSKEQMSVAFLFFEWAAIPSTLLAGWLSDKLFKGRRMpLAIICMTLIFICLIGYWKSESLLM 351
                 678999999999999*****99999*******************************************6544441334444444444444455666666 PP

   LacY_symp 101 lnilvGalvGgvflGlvysaga 122
                 + ++  a+vG++     ++a  
  CTQ28167.1 352 VTVF-AAIVGCLIYVPQFLASV 372
                 6655.57888776655666655 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0032
   LacY_symp 365 lstlaGklydkvGfqta.ylvlgiivlsltl 394
                  ++l G + dk+G++   yl++g iv+ ++ 
  CTQ28167.1 402 GTSLFGVMVDKMGWHGGfYLLMGGIVCCILF 432
                 4567899*******98626778999998764 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  21.5    0.0006       2.7       7     180 ..      43     219 ..      38     432 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0006
       MFS_4   7 iGRFsytpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvv....lvf 101
                 i R  +t+  P l +++ ls++q+gll +  ++ Y +   + ++ + +   ++ + +gl++++++ +  ++ ++f++f+++ +l G+  ++     ++ 
  CTQ28167.1  43 IVRNNFTLSTPYLKEQLDLSATQIGLLSSCMLIAYGISKGVMSSLADKASPKVFMACGLVLCAIVNVGLGFSTAFWVFAALVVLNGLFQGMGvgpsFIT 141
                 66889******************************8876656555666666777*************************99999998877752222666 PP

       MFS_4 102 gsslvlahaaaarrervgal..lfaGvGlGiavsgllvllllqlglsassl.Wlalavlsavllllvalllpraalreasaa 180
                 ++++  ++    +r+rvga+  +   vG Gi+++ + ++++     +++s+ +++ a +++v  + v++l + ++++e+  +
  CTQ28167.1 142 IANWFPRR----ERGRVGAFwnISHNVGGGIVAPIVGAAFAILGTEHWQSAsYIVPACVAVVFAISVLVLGKGSPREEGLPS 219
                 66666555....7888888622445789999877666655555555544443788888888888888777764444443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 3265.50
//
Query:       CTQ28168.1  [L=149]
Description: hypothetical protein CH1034_220144 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-12   47.6   0.0    2.6e-12   46.6   0.0    1.6  1  LysM          LysM domain
    2.7e-10   40.4   4.7    3.7e-10   40.0   4.7    1.2  1  BON           BON domain
  ------ inclusion threshold ------
       0.12   12.0   0.0        0.2   11.4   0.0    1.4  1  Phage_tail_X  Phage Tail Protein X


Domain annotation for each model (and alignments):
>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   4.3e-16   2.6e-12       1      44 []      99     147 ..      99     147 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 4.3e-16
                 EEE-TT--HHHHHHHC...TCHHHHHHHHC..TCSSCGG--TTEEEEEE CS
        LysM   1 YtVkkGDTLwsIAkry...gitveklleaN..nlsspdkifpGqkLkiP 44 
                 YtVk+GDTL++I+k+       ++++ eaN   l  pdki+pGq+L+iP
  CTQ28168.1  99 YTVKSGDTLSAISKAMygsANEYQRIFEANkpMLTHPDKIYPGQVLIIP 147
                 9*****************977779************************9 PP

>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   4.7   6.2e-14   3.7e-10       3      68 ..      24      90 ..      22      91 .. 0.92

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 6.2e-14
                HCCHHHHHHHHHHHCHTTGCCCEEEEET.TCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEEEE CS
         BON  3 aeiaakvkaalakdggldaadinVeven.GvVtLsGtVdseaekekAveiarnvaGVkkVvnelkvr 68
                ++ a+k+k+++      +a+++n++v + G +t++G V+s+++kek+ +++ nv+GV +V + +kv+
  CTQ28168.1 24 EDRADKLKKHIDGLNLPGAEKVNIDVAEdGTATVTGDVASQEDKEKILVAVGNVTGVGQVSDGVKVT 90
                6778999999999988899*******99899*********************************997 PP

>> Phage_tail_X  Phage Tail Protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.3e-05       0.2       4      35 ..      99     131 ..      96     147 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.3e-05
                   EE-.TT-SHHHHHHHTTS--TTTHHHHHHHS.TT CS
  Phage_tail_X   4 yat.qgdtlDalcwryYGrtlgvveavleaN.Pg 35 
                   y+   gdtl a+  + YG++  +  +++eaN P 
    CTQ28168.1  99 YTVkSGDTLSAISKAMYGSANEY-QRIFEANkPM 131
                   66668******************.*******444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1201.90
//
Query:       CTQ28169.1  [L=206]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-31  107.2   7.3    8.3e-31  107.0   7.3    1.0  1  LysE      LysE type translocator
  ------ inclusion threshold ------
      0.075   12.7   1.2       0.12   12.0   1.2    1.8  1  TerC      Integral membrane protein TerC family


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   7.3   9.2e-35   8.3e-31       3     192 ..      17     204 ..      15     205 .. 0.94

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 9.2e-35
        LysE   3 lllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksveaslvkpfl 101
                 l l+pG +++l+l+++ ++g ++++ +alg+ +g  ++  l+++Gl +Ll  ++ + ++l++ G+ yL+wlg++ l +  ++ +  ++++  s ++ fl
  CTQ28169.1  17 LTLTPGLDTALILRTATAEGGRKALHAALGIDLGCFIWGALVAFGLGALLAVSELAYTLLKWCGAGYLCWLGIQLLLRPRQQFNTHPAESD-STSNWFL 114
                 689*************************************************************************999999999999997.9****** PP

        LysE 102 kglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvlriinvvvgvlligfavkllle 192
                 +g+l +++NPk+ +f++s++++++ +++ +  +  ++l+ ++v+   +w   l++ +   +  l+++ v ++++  +g+l+++fa+kl+++
  CTQ28169.1 115 RGMLGNVLNPKMGVFYVSFLPQFIPAGHSPINW-TFLLVTIHVLIGTLWSLTLITATRYAAGILKKPAVVKWMDRTTGCLFLLFAAKLAMS 204
                 *************************65555555.555668999999******************************************975 PP

>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.2   1.4e-05      0.12      38      99 ..      53     110 ..      12     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
        TerC  38 ilgAlvlRillillavallelfdlilligglfLlytavkellekrlenklvkeekkkkkktk 99 
                 i+gAlv   l  llav  l++ +l++  g+ +L+++++++ll  r++    +++ +++++t+
  CTQ28169.1  53 IWGALVAFGLGALLAVSELAY-TLLKWCGAGYLCWLGIQLLLRPRQQ---FNTHPAESDSTS 110
                 556665555555555555555.89*****************986633...333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1727.14
//
Query:       CTQ28170.1  [L=368]
Description: PTS system, fructose subfamily, IIC subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-06   27.2  36.2    1.8e-06   27.2  36.2    2.8  2  PTS_EIIC   Phosphotransferase system, EIIC
     0.0071   14.8   2.9      0.013   14.0   2.9    1.3  1  Gag_spuma  Spumavirus gag protein


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2  36.2     2e-10   1.8e-06       3     321 ..      19     286 ..      17     290 .. 0.81
   2 ?   -0.2   1.8     0.045     4e+02     108     149 ..     309     346 ..     280     350 .. 0.43

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 2e-10
    PTS_EIIC   3 gfmlpiplliagGillglgn.lpnssdlkglss...lgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaais 97 
                 ++++ ip++  +G+++++g+ l+  +      +    g++++++     ++ +g  ++++Lp+ +a+gi+ ++   gk+  ++++++gl+a        
  CTQ28170.1  19 AISFLIPIVCGAGFIIAIGMgLGG-TVQ----DtltPGQFDLWQ----AMATLGAKALGLLPVVIAVGISGSI--AGKPGIAPGFVVGLAA-------- 98 
                 68899***************5332.111....122357888999....*************************..6777777********9........ PP

    PTS_EIIC  98 vlllaagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllg 196
                                    +t s g++g++i g +a+y+   + k   +k+P+    +  + +vp + +++++l++ ++++  + +++ +l+++   l 
  CTQ28170.1  99 -------------------NTISAGFIGGMIGGYIAGYIALAIIK--NVKVPDWARGLMPTLIVPFFASIISCLIMVYIIGTPIGIFTEALTSF---LR 173
                 ...................5679****************999999..58****99999988888888888888888888888888888888884...34 PP

    PTS_EIIC 197 gsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllgsaaltp 295
                 ++g   + l++g+++++l +++ +++++++   ++++  ++ +n+ ++              +  +   +g++la +ia +l+k+  ++ ++  +   +
  CTQ28170.1 174 SMG-TSSNLVLGAVIGALCIVDFGGPLNKTCFAFVLTLQAQGINEPITAL-----------QLVNTATPIGFGLAFFIAKLLRKNIYNSEEVETLKS-A 259
                 444.556789********************99999866666656555553...........123566778999999999999999999999999988.5 PP

    PTS_EIIC 296 flfGItepleFgfpfvlnll.lfipal 321
                 + +GI  ++e ++p+v+n +   i+a+
  CTQ28170.1 260 VPMGIVNIVEGSIPIVMNDIvRGIAAA 286
                 78***************9885555555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.045
    PTS_EIIC 108 sakasilgiktlstgvfgaiivgllaaylynkfeknitikLP 149
                  +  +i+     + g+++ ++  +++a +y++++k     +P
  CTQ28170.1 309 GGVLMIPTMSHPMAGIMALLVNIVVTATVYAVIKK----DIP 346
                 23444444444444555555555555555555555....555 PP

>> Gag_spuma  Spumavirus gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   2.9   1.4e-06     0.013     348     434 ..      36     121 ..      13     129 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-06
   Gag_spuma 348 inallggnlglsltpgdcitwdsavatlfirtygqyplhqlgnvlkgiadqegvataytlgmmlsgqnyqlvsgiirgylpgqavvt 434
                 i   lgg +  +ltpg+   w+ a+atl  ++ g  p+     +   ia + g+a  + +g+        ++ g+i gy+ g   ++
  CTQ28170.1  36 IGMGLGGTVQDTLTPGQFDLWQ-AMATLGAKALGLLPVVIAVGISGSIAGKPGIAPGFVVGLAANTISAGFIGGMIGGYIAGYIALA 121
                 56679**************996.89**************999999************************************986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2974.75
//
Query:       CTQ28171.1  [L=103]
Description: putative enzyme IIB component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-18   66.9   4.6    2.2e-18   66.8   4.6    1.0  1  PTS_IIB   PTS system, Lactose/Cellobiose specific IIB subunit


Domain annotation for each model (and alignments):
>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   4.6   1.2e-22   2.2e-18       2      90 .]       5      96 ..       4      96 .. 0.95

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 1.2e-22
                EEEEESSSHHHHHHHHHHHHHHHHHCT....EEEEETTEE..GGGHHHHHHT-SEEEEEESSGGCTHHHHTTSEEEEECTTHHHCCHCHHHHHHH CS
     PTS_IIB  2 illaCgaGmatSlmaaeklekaakelg....ieaegeagv..eleaeeiaddaDlvllapqvrvkdlarfagkpvavinikdalgimdgekvlke 90
                 ++aC  G+a++++a++k+e aak++g    ie++g+ g+  +l+a+eia  aD+vlla++v+v  ++rfagk+v+++ ++ a+  + ++k++++
  CTQ28171.1  5 GVTACTVGIAHTYIAQKKIETAAKKAGhnvkIETQGTIGIenQLTANEIAM-ADIVLLAADVKVTGEERFAGKKVVKVATETAV--KSPNKLIEK 96
                59***************************************9999999999.**************************999988..999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       971  (0.0541581); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 857.00
//
Query:       CTQ28172.1  [L=156]
Description: PTS family enzyme IIA/ enzyme IIBC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-34  116.5   0.1    9.6e-34  116.4   0.1    1.0  1  PTS_EIIA_2     Phosphoenolpyruvate-dependent sugar phosphotra
  ------ inclusion threshold ------
      0.069   12.9   0.6        1.3    8.8   0.0    2.4  3  Orthopox_B11R  Orthopoxvirus B11R protein


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.1   1.1e-37   9.6e-34       2     142 ..       6     148 ..       5     150 .. 0.96

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 1.1e-37
                 HHHCCGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTETCEE----SCCCBSS-EEEEEEEEEEEE-T-GCC-CEEEEEEEE CS
  PTS_EIIA_2   2 lltkelifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgigngvAiPHarleavkkpaiavlklkepvdfeasdgkpvkliflla 100
                 +l+ ++i+l+ +a +kee+ie+l+++l+++gav+++e+++ +++ re+++stg++n +AiPH+++ +v+++a+a+++ ++ + +e+ dg +v+ ++l+a
  CTQ28172.1   6 VLNVKNIKLNMTARTKEEVIEELTDLLIQDGAVTNKEDFIRDVWLREELGSTGFENHIAIPHGKSSGVSRTALAIGRTQHAIPWETMDGSDVRCVILFA 104
                 6899*****************************************************************************************999998 PP

                 -SSCHH...HHHHHHHHHHHHCSCCHHHHHHC--SHHHHHHHHC CS
  PTS_EIIA_2 101 lpekdae..hlkilaqLaellkdeefvekLrkakseeeilelle 142
                 +   d++  h+++laq++  l de+ + kL+  +++++i++l++
  CTQ28172.1 105 VCLVDQNatHIRLLAQVSGSLADEDIIAKLLVESDPHKIIALFN 148
                 877777777********************************997 PP

>> Orthopox_B11R  Orthopoxvirus B11R protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.5     0.028   2.5e+02       4      23 ..       6      26 ..       3      30 .. 0.80
   2 ?    8.8   0.0   0.00015       1.3       1      50 [.      35      82 ..      35     101 .. 0.84
   3 ?   -3.4   0.0      0.94   8.4e+03       8      14 ..     128     134 ..     124     150 .. 0.61

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.028
  Orthopox_B11R  4 vtnvedi.ineidrekeeilk 23
                   v nv++i +n   r kee++ 
     CTQ28172.1  6 VLNVKNIkLNMTARTKEEVIE 26
                   779999867888999999986 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00015
  Orthopox_B11R  1 dtdvtnvediineidrekeeilknveiennkninknhpsGyirealvint 50
                   d  vtn ed i ++     e l     en   i   + sG  r al i  
     CTQ28172.1 35 DGAVTNKEDFIRDVWLR--EELGSTGFENHIAIPHGKSSGVSRTALAIGR 82
                   6679*******998653..3488999********************9965 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 0.94
  Orthopox_B11R   8 ediinei 14 
                    edii ++
     CTQ28172.1 128 EDIIAKL 134
                    4444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1307.29
//
Query:       CTQ28173.1  [L=226]
Description: allulose-6-phosphate 3-epimerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-62  210.5   0.1    1.7e-62  210.3   0.1    1.1  1  Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
     0.0089   15.8   0.1       0.05   13.4   0.0    2.1  3  QRPTase_C       Quinolinate phosphoribosyl transferase, C-ter


Domain annotation for each model (and alignments):
>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.3   0.1   1.9e-66   1.7e-62       2     195 ..       5     198 ..       4     202 .. 0.97

  Alignments for each domain:
  == domain 1  score: 210.3 bits;  conditional E-value: 1.9e-66
                     EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSS-B-B-HHHHHHHGGGE-S-EEEEEESSSHHHCHHHHHHCT-SEEEEE-S.T-TTHH CS
  Ribul_P_3_epim   2 iapSllsadfarlgeevkaveeagadllHvDvmDghfvpNltigplvvealrkltelpldvHLmveevdrivpefaeagasiisvHaE.alehlk 95 
                      +pSl+  d ++ +e+++a++++ ad+ HvD+mDg++v N+t+ p  +e+l+k+t++p+dvHLmv++++ i+p  +eaga+iis+H+E a +++ 
      CTQ28173.1   5 FSPSLMCRDLTQFKEQITAMNKK-ADFYHVDIMDGNYVRNITLSPFFIENLKKITTVPIDVHLMVNHPEDIIPMCLEAGADIISFHPEtANNKIF 98 
                     589*****************977.****************************************************************88899** PP

                     HHHHHHHHTTSEEEEEE-TT--GGGGTTTCCC-SEEEEESS-TT-SS----CCHHHHHHHHHHHHHHHT---EEEEESS--TTTCHHHHHHT--E CS
  Ribul_P_3_epim  96 rtiqeikeaGakaglvlnpatplealeyllekldlvllmsvePgfgGQkFipevlekikkvrklidekeldlkievDGGvkldnieqiaeagadv 190
                     r++++ik+aG+k g+vlnpatp e++ + ++ ld v++msv+Pg  GQkFipe l+ki+k+ ++ ++++++   e+DG  ++++  qiae g+dv
      CTQ28173.1  99 RLLNQIKDAGKKCGVVLNPATPAESIAEYAHLLDKVTVMSVDPGYAGQKFIPESLNKIRKLINMRKNNGYHYLTEIDGSCNEKTFGQIAESGVDV 193
                     *********************************************************************************************** PP

                     EEESH CS
  Ribul_P_3_epim 191 lVags 195
                     +++g+
      CTQ28173.1 194 FIVGT 198
                     *9996 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.22     2e+03      91     117 ..      18      44 ..      11      70 .. 0.77
   2 ?   -0.7   0.0      0.12   1.1e+03      95     124 ..      77     107 ..      24     140 .. 0.63
   3 !   13.4   0.0   5.6e-06      0.05     111     156 ..     153     198 ..     130     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.22
                 HHHHHHHHHT-SEEEEES--HHHHHHH CS
   QRPTase_C  91 eeleevleaeadiimLDnfsveelkka 117
                 +e   +++ +ad   +D ++ + ++++
  CTQ28173.1  18 KEQITAMNKKADFYHVDIMDGNYVRNI 44 
                 445567778888888888887777765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.12
                 HHHHHT-SEEEEES--H.HHHHHHHHHHHHH CS
   QRPTase_C  95 evleaeadiimLDnfsv.eelkkaveelkek 124
                   lea+adii +   ++ +++ + ++++k +
  CTQ28173.1  77 MCLEAGADIISFHPETAnNKIFRLLNQIKDA 107
                 3467888888765333224555555555554 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 5.6e-06
                 HHHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECH CS
   QRPTase_C 111 veelkkaveelkeknkrvlievSGgvtlenveeyaksgvdvisvga 156
                  ++++k ++++k+   + l+e  G+ ++++  ++a+sgvdv+ vg+
  CTQ28173.1 153 LNKIRKLINMRKNNGYHYLTEIDGSCNEKTFGQIAESGVDVFIVGT 198
                 46777888877777777***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1682.10
//
Query:       CTQ28174.1  [L=420]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-144  481.8  40.1     2e-144  481.6  40.1    1.0  1  EIIC-GAT  PTS system sugar-specific permease component


Domain annotation for each model (and alignments):
>> EIIC-GAT  PTS system sugar-specific permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  481.6  40.1  1.1e-148    2e-144       2     396 .]       9     404 ..       8     404 .. 0.99

  Alignments for each domain:
  == domain 1  score: 481.6 bits;  conditional E-value: 1.1e-148
    EIIC-GAT   2 ilggpaillglivligllllkkklskaikgtlkaiiGflilslgagllvsslkpvaeafseafglkidvvwpneaivalassqelgsevalilllgliv 100
                 +lg+pail+gl+ liglll+kk++s++i+gtlk+i+Gf+il++gag++  +l+ +++ f++ f++ ++vv++++a++ala+ +++g+e+a+i++lg+++
  CTQ28174.1   9 VLGTPAILVGLFSLIGLLLQKKGISDVISGTLKTIMGFVILTAGAGIIAYTLTIFSQLFEHSFHI-QGVVPNTDAMAALAQ-KNYGTETATIMVLGMLI 105
                 899**************************************************************.8**************.599************** PP

    EIIC-GAT 101 niilarfkktttlkyifltghvmlqqalvlavvlyvlgfgnvalviigslllglywlvlpaltqkftrkitgndgvalghqqtlgyalaalvgklfgkk 199
                 ni lar+++   lkyifltgh++l++a++lav+l v g+++ ++v ig+++lg++++++pa++q+ftrkit++d++algh++++gy+l+alvgk++gk 
  CTQ28174.1 106 NIALARLTP---LKYIFLTGHHTLYMAAMLAVILSVGGLSGGWVVAIGAVILGAMMVISPAILQPFTRKITNTDDLALGHFGSIGYLLSALVGKIIGKG 201
                 *********...*************************************************************************************** PP

    EIIC-GAT 200 ekstekiklpkklgflrdnivagailmlilfllaaliagkel.....sggknfvvqiltqaltfaaglviilkgvrmfveelvpafkgiseklvpgavp 293
                 + s+e+ik+pk+l+flrd+ va++++m+ilfl+++l+agk++     s+g+nf++++++q+ltfaag++iil+gvrm ++e+vpafkgi++klv++a+p
  CTQ28174.1 202 SPSIEEIKVPKSLNFLRDSSVAISLTMMILFLVLVLVAGKSFveetlSAGQNFIIFAIIQSLTFAAGVYIILAGVRMVIAEIVPAFKGIADKLVKDAKP 300
                 **************************************999888888899************************************************* PP

    EIIC-GAT 294 AlDvavvfgfapnavtiGfllsfigqllallilillgaaiilPgvlplfflgatagvfanavggikgaiigsfisGllilflpalllpllgelgmagvt 392
                 AlD+++vf+fapnav++Gfl sf+++l+++++++l+g+++i+Pg++p+ff+gatagv++n++gg++ga++g+f++Glli+flpa+llp++g++g  ++t
  CTQ28174.1 301 ALDCPTVFPFAPNAVIVGFLASFVAGLVSMFLCPLFGLSVIVPGLVPHFFCGATAGVYGNITGGRRGAVVGAFAHGLLISFLPAILLPMMGDMGLGSTT 399
                 ***********************************************************************************************9999 PP

    EIIC-GAT 393 f.dad 396
                 f dad
  CTQ28174.1 400 FgDAD 404
                 99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1048  (0.0584528); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3228.41
//
Query:       CTQ28175.1  [L=88]
Description: PTS family protein II component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-17   62.5   1.0    5.2e-17   62.3   1.0    1.0  1  PTS_IIB      PTS system, Lactose/Cellobiose specific IIB subu
  ------ inclusion threshold ------
      0.012   15.9   0.2      0.015   15.6   0.2    1.1  1  DUF948       Bacterial protein of unknown function (DUF948)
      0.055   12.5   0.0      0.056   12.4   0.0    1.0  1  Glucokinase  Glucokinase
        0.1   12.7   0.1       0.13   12.3   0.1    1.2  1  B12-binding  B12 binding domain


Domain annotation for each model (and alignments):
>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   1.0   1.2e-20   5.2e-17       1      89 [.       3      85 ..       3      86 .. 0.90

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 1.2e-20
                EEEEEESSSHHHHHHHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEESSGGCTHHHHTTSEEEEECTTHHHCCHCHHHHHH CS
     PTS_IIB  1 killaCgaGmatSlmaaeklekaakelgieaegeagveleaeeiaddaDlvllapqvrvkdlarfagkpvavinikdalgimdgekvlk 89
                k+l++Cg+G+++S++++++++k++ e++ eae+++++ l++++ ++ aDl+l+a++++ + l+++ +   +v+ ++++l++++++++l+
  CTQ28175.1  3 KVLIVCGNGLGSSFIVEMNVKKILAEMNKEAEVAHTD-LTSAKSET-ADLILSAKDIA-EHLSSHSA---KVVGLSNLLDNNKIKEILA 85
                89***********************************.66666555.***********.57777777...6****************97 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.2   3.2e-06     0.015      19      70 ..      17      68 ..      12      77 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.2e-06
      DUF948 19 vvllklkktldeaaatieelekqvdpilkevedllakvnelledvneklekv 70
                +v +++kk+l e+++  e+   ++++   e++dl+  +++++e ++++++kv
  CTQ28175.1 17 IVEMNVKKILAEMNKEAEVAHTDLTSAKSETADLILSAKDIAEHLSSHSAKV 68
                567899*****************************************99998 PP

>> Glucokinase  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.3e-05     0.056     131     187 ..       4      64 ..       1      84 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.3e-05
  Glucokinase 131 avlGaGTGLGvallipekerrv....vlasEGGhvdfapeseeevelleilrkklgrvsaE 187
                  +++  G GLG +++++ + +++      + E +h+d+ + + e + l+  +++  +++s  
   CTQ28175.1   4 VLIVCGNGLGSSFIVEMNVKKIlaemNKEAEVAHTDLTSAKSETADLILSAKDIAEHLSSH 64 
                  67789**********99988764311346788**************************975 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.9e-05      0.13      18      62 ..      24      76 ..      14      86 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.9e-05
  B12-binding 18 avlaaalrdagfeVqllganven..........edivaairaekpdvvglSallt 62
                 ++la++ ++a  eV +++++  +          +di++ + ++ + vvglS ll 
   CTQ28175.1 24 KILAEMNKEA--EVAHTDLTSAKsetadlilsaKDIAEHLSSHSAKVVGLSNLLD 76
                 6788888887..777777777777789999999******************8654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 746.54
//
Query:       CTQ28176.1  [L=145]
Description: PTS family enzyme IIA, mannitol-specific, cryptic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-32  109.9   0.0      1e-31  109.8   0.0    1.0  1  PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransf


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   5.7e-36     1e-31       3     141 ..       6     144 ..       4     145 .] 0.97

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 5.7e-36
                 HHCCGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTE..TCEE----SCCC.BSS-EEEEEEEEEEEE-T-GCC-CEEEEEE CS
  PTS_EIIA_2   3 ltkelifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgig..ngvAiPHarlea.vkkpaiavlklkepvdfeasdgkpvklifl 98 
                 lt++ i++ ++++s+e a + +a++l+ +g++  +  y+ea+l++ k+ +++++  +g+A+PHar+e+ v+++++++l +ke+v f++++++pv+++++
  CTQ28176.1   6 LTPDKIKVINSIDSWENAVRLAAEPLLMQGYIAGS--YIEAILQSHKELGPYYVlaPGLAMPHARPEQgVLRNGLSLLHIKEGVSFGSTENDPVNVVII 102
                 789999999999*********************99..****************888*********9988******************999********* PP

                 EE-SSCHH.HHHHHHHHHHHHCSCCHHHHHHC--SHHHHHHHH CS
  PTS_EIIA_2  99 lalpekdaehlkilaqLaellkdeefvekLrkakseeeilell 141
                 l++ + ++ h++++ +Lae+++d++ +++L++a+++++i++++
  CTQ28176.1 103 LCARSGNE-HITMIGELAEIFSDQQKLHRLLNADDSKAIQAVI 144
                 ********.*******************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1280.03
//
Query:       CTQ28177.1  [L=352]
Description: putative periplasmic binding protein/LacI transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-25   91.0   0.0    2.1e-25   90.0   0.0    1.5  1  Peripla_BP_3    Periplasmic binding protein-like domain
    1.6e-15   57.3   0.0      2e-15   56.9   0.0    1.1  1  Peripla_BP_1    Periplasmic binding proteins and sugar bindin
      7e-15   54.6   0.0    1.5e-14   53.5   0.0    1.6  1  LacI            Bacterial regulatory proteins, lacI family
    1.7e-06   27.8   0.0    5.4e-05   22.9   0.0    2.3  2  Peripla_BP_4    Periplasmic binding protein domain
     0.0039   16.7   0.0       0.01   15.3   0.0    1.7  1  HTH_24          Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.042   13.3   0.7       0.12   11.9   0.1    2.0  2  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.043   13.6   0.0        0.1   12.4   0.0    1.6  1  HTH_23          Homeodomain-like domain
      0.046   13.4   0.0       0.12   12.0   0.0    1.8  1  GntR            Bacterial regulatory proteins, gntR family
      0.049   13.2   0.1       0.11   12.0   0.1    1.5  1  Sigma70_r4      Sigma-70, region 4
      0.076   13.1   0.0       0.15   12.1   0.0    1.5  1  HTH_3           Helix-turn-helix
      0.085   12.8   0.0       0.51   10.3   0.0    2.1  2  MarR            MarR family
       0.16   12.0   0.0       0.34   10.9   0.0    1.5  1  HTH_Crp_2       Crp-like helix-turn-helix domain
       0.17   11.7   0.0       0.36   10.7   0.0    1.5  1  HTH_10          HTH DNA binding domain
       0.18   11.6   0.0       0.42   10.4   0.0    1.5  1  HTH_DeoR        DeoR-like helix-turn-helix domain
       0.18   11.2   0.0        1.2    8.5   0.0    2.1  2  Methyltransf_4  Putative methyltransferase


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   1.8e-28   2.1e-25       1     166 []     190     350 ..     190     350 .. 0.90

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 1.8e-28
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHH..HHCC-SEEEEESSCCHHHHHHHHHC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraal.llqal..klaalPtAviaasDelAlgvlqalr 94 
                   v hL+++  ++ia+++  ++ +++  ++++ g++ a+ +l+  ++++v+++ ++++a+++++ + +   +  ++    +A+i++sDe+A+g + a++
    CTQ28177.1 190 VTHLADASLKNIALLC--TPANNTMFRQLLSGWNTAMLALNRSPHRVVTTHLPSTIATGVNIFKdM---MitWGDL--DALICTSDEMACGCMMACH 279
                   68**************..88889***************************************9841...2345555..9****************** PP

                   CTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  95 eaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                    ag++vP+ +++ ++ +  l++++sP+lTtv+ p++++G +a ++ll+ll++++  ++ +++p  l +R+St
    CTQ28177.1 280 SAGIKVPNTVAIASLGGGVLSTVCSPALTTVEFPWHDIGVKAGKALLELLNDKPG-EKFIEIPSVLKVRAST 350
                   ****************97888*****************************55444.4444577779999998 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   1.7e-18     2e-15       3     259 ..      83     329 ..      81     348 .. 0.87

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 1.7e-18
                   EEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EE CS
  Peripla_BP_1   3 klglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPcv 98 
                    +++v+p  + P fl + ++++k + e g+ ++ ++ g +++ + k ++ ++a  + ++i    dt  +  +  a+ ++p+++++     p+g+ c+
    CTQ28177.1  83 LILAVVPTFSSPGFLPVSEALQKVLTERGYTMMFMESGHDGQSEqKTFEKMLAYNPAAIIQFNIDTIESCTQLLANVDVPILEIGALNTHPVGM-CI 178
                   689*****************************************9******************99995555555555**************776.68 PP

                   EE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHHHH CS
  Peripla_BP_1  99 ipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaalGa 195
                     d  +a ++   +L  +  k+ iall  p+++   ++   G+  a+ +  +  + v      ++i  + +  + ++    ++da+++ +de+a G 
    CTQ28177.1 179 GVDYGKAVKQIVTHLADASLKN-IALLCTPANNTMFRQLLSGWNTAMLALNRSPHRVVTTHLPSTIATGVNIFKDMMITWGDLDALICTSDEMACGC 274
                   899*******************.***************************996666666667889******************************** PP

                   HHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH CS
  Peripla_BP_1 196 vlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqki 259
                   ++a   +G +k +++v        + ++L     +++  + l++ + p + +G ka + +l+  
    CTQ28177.1 275 MMACHSAG-IKVPNTV--------AIASLGGGVLSTVCSPALTTVEFPWHDIGVKAGKALLELL 329
                   ********.*******........3333333344777888888888888888888888888766 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   1.2e-17   1.5e-14       1      46 []      25      70 ..      25      70 .. 0.99

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1.2e-17
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                t+ +VA+  GVS++TVSr L+ +e+V  e+r+r+ aa+ +l+Y+Pn
  CTQ28177.1 25 TLTEVAEFVGVSAMTVSRALRMPEKVNPELRDRIDAAVSQLGYVPN 70
                899******************************************9 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.5e-08   5.4e-05       4     208 ..      87     284 ..      84     300 .. 0.87
   2 !   10.5   0.0   0.00027      0.32       2     124 ..     202     334 ..     201     350 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.5e-08
                   EES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEE CS
  Peripla_BP_4   4 vvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayv 100
                   vv+++s+p f ++ e+l++ + e g++  ++  ++ d + +++ +e+++a ++ +ii   +d+  +++  + +++  +p+  + ++  +++++  ++
    CTQ28177.1  87 VVPTFSSPGFLPVSEALQKVLTERGYTMMFM-ESGHDGQSEQKTFEKMLAYNPAAIIQFNIDT--IESCTQLLANVDVPILEIGAL--NTHPVGMCI 178
                   789999998888*****************96.***************************9996..99999999999**********..********* PP

                   EC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH...-TTCEECCEEESTTTCHHHHHHHHHHHHHTT.TECEEEESSCC CS
  Peripla_BP_4 101 gfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke...ypgikivaevaganwdaekaqqalealltan.pldgilaandg 193
                   g d  +a +++   la++     +++++l   ++++  ++ + g + ++ +    p      ++ +   + +++ +   +++  + +ld+ ++++d+
    CTQ28177.1 179 GVDYGKAVKQIVTHLADASL---KNIALLCTPANNTMFRQLLSGWNTAMLAlnrSPHRV---VTTHLPSTIATGVNIFKDMMITWgDLDALICTSDE 269
                   ****9999999999999998...67****999999999999999999976733233222...2336679**************8866********** PP

                   HHHCHHHHHHHTTTT CS
  Peripla_BP_4 194 maegalealeaagla 208
                   ma g + a  +ag++
    CTQ28177.1 270 MACGCMMACHSAGIK 284
                   ******999999984 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00027
                   EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEE..ECSTT-HHHHHHHHHHH.HHTT.-SEEEE--SSHHHHHHHHHHHHHTT-EE...EEESTT.. CS
  Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvv..gdaendaaeQvaqieda.iakg.vdgiivapvdstalapalkkakaaGIpV...vafdsd.. 89 
                   +++ ++++n+ f+++  g+  a  +l+ +   v      +++a+ v+++ d+ i+ g  d++i ++ +   +   + ++++aGI+V   va+ s+  
    CTQ28177.1 202 ALLCTPANNTMFRQLLSGWNTAMLALNRSPHRVvtTHLPSTIATGVNIFKDMmITWGdLDALICTSDE--MACGCMMACHSAGIKVpntVAIASLgg 296
                   66677777776666777777777776666555544455566699999999999**999***9999544..4669**********9844466666688 PP

                   ...GCTTT-CEEEEEC-HHHHHHHHHHHHHHHCTTH.E CS
  Peripla_BP_4  90 ...dapsgerlayvgfdneaaGelqaeylaeklggkkg 124
                       ++ ++ l  v f  +++G  ++++l+e l++k+g
    CTQ28177.1 297 gvlSTVCSPALTTVEFPWHDIGVKAGKALLELLNDKPG 334
                   888788888888**********************9944 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   8.8e-06      0.01      16      39 ..      22      45 ..      19      46 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.8e-06
      HTH_24 16 prisqreLAerlglSpstvnrrlk 39
                ++i+ +e+Ae +g+S  tv+r l+
  CTQ28177.1 22 GKITLTEVAEFVGVSAMTVSRALR 45
                78*******************998 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   9.7e-05      0.12      28      49 ..      24      45 ..      21      46 .. 0.90
   2 ?   -1.5   0.1       1.4   1.7e+03      19      37 ..     188     205 ..     185     205 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.7e-05
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwrild 49
                  ++ ++vA+ +gvS+ TV r+l+
    CTQ28177.1 24 ITLTEVAEFVGVSAMTVSRALR 45
                  689****************986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.4
  HTH_Tnp_ISL3  19 yilelllesrsvkavArql 37 
                   +i++ l +  s k +A ++
    CTQ28177.1 188 QIVTHLADA-SLKNIALLC 205
                   788889999.999999875 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.6e-05       0.1      18      39 ..      24      45 ..      15      48 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.6e-05
      HTH_23 18 lsvreIAreLgvsrrTvyrwlk 39
                ++ +e+A+  gvs +Tv+r l+
  CTQ28177.1 24 ITLTEVAEFVGVSAMTVSRALR 45
                7899***************986 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0001      0.12      23      47 ..      23      46 ..      18      62 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
                B---HHHHHHHHTS-HHHHHHHHHH CS
        GntR 23 kLPsereLaaefgVsrttvReALrr 47
                k+ +  e+a+  gVs++tv +ALr+
  CTQ28177.1 23 KI-TLTEVAEFVGVSAMTVSRALRM 46
                56.7899****************97 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   9.3e-05      0.11      20      40 ..      23      43 ..      16      45 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.3e-05
                T--HHHHHHHHTS-HHHHHHH CS
  Sigma70_r4 20 glTleEIgerlgiSrerVrqi 40
                + Tl E++e  g+S ++V++ 
  CTQ28177.1 23 KITLTEVAEFVGVSAMTVSRA 43
                67****************986 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.15       3      33 ..      16      49 ..      14      56 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                HHHH.HTTHHHHHHHHHHTSSHHHHHHHHTT..S CS
       HTH_3  3 elRk.qlglsqeeLAeklGvsrstisriEnG..e 33
                ++Rk   +++++e+Ae +Gvs  t+sr  +   +
  CTQ28177.1 16 KRRKgTGKITLTEVAEFVGVSAMTVSRALRMpeK 49
                56778889******************98776544 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00043      0.51      16      39 ..      22      45 ..      19      49 .. 0.92
   2 ?   -0.5   0.0         1   1.2e+03       8      34 ..     325     351 ..     324     352 .] 0.91

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00043
                TTEEHHHHHHHHTS-HHHHHHHHH CS
        MarR 16 gplsvseLakklgvskstvtrvld 39
                g ++++e a+++gvs +tv+r+l+
  CTQ28177.1 22 GKITLTEVAEFVGVSAMTVSRALR 45
                789******************997 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1
                 HHHHHHHSTTEEHHHHHHHHTS-HHHH CS
        MarR   8 iLrilyeqgplsvseLakklgvskstv 34 
                 +L++l ++++ + +e+ + l+v  st+
  CTQ28177.1 325 LLELLNDKPGEKFIEIPSVLKVRASTA 351
                 79999*****************99996 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00028      0.34      21      43 ..      23      45 ..       6      49 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00028
                EHHHHHHHHHTTSSHHHHHHHHH CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrils 43
                ++t +e A+++G++  tvsr+l+
  CTQ28177.1 23 KITLTEVAEFVGVSAMTVSRALR 45
                67899****************97 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0003      0.36      23      46 ..      23      46 ..      22      49 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0003
      HTH_10 23 rvtlkeLAkelGIskstlsehLrk 46
                ++tl e+A+  G+s++t+s  Lr 
  CTQ28177.1 23 KITLTEVAEFVGVSAMTVSRALRM 46
                589*******************95 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00035      0.42      12      34 ..      21      43 ..      19      52 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00035
    HTH_DeoR 12 qgklsveelvellgvSeaTiRRD 34
                 gk++++e++e  gvS +T+ R 
  CTQ28177.1 21 TGKITLTEVAEFVGVSAMTVSRA 43
                599*****************775 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0     0.001       1.2      23      66 ..     172     214 ..     166     229 .. 0.82
   2 ?   -0.6   0.0      0.65   7.8e+02       7      31 ..     316     340 ..     313     348 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.001
                     STTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHH CS
  Methyltransf_4  23 nPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvlle 66 
                     +P   ++G++   k v++++ + ++  lkN+++l++ a +++ +
      CTQ28177.1 172 HPVGMCIGVDY-GKAVKQIVTHLADASLKNIALLCTPANNTMFR 214
                     67778999995.6789********************99766654 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.65
                     EET-TTSHHHHHHHHHSTTSEEEEE CS
  Methyltransf_4   7 eiGcGkGeflvalAkknPdknflGi 31 
                     +iG+  G++l++l +++P  +f+ i
      CTQ28177.1 316 DIGVKAGKALLELLNDKPGEKFIEI 340
                     9*****************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2638.99
//
Query:       CTQ28178.1  [L=46]
Description: hypothetical protein CH1034_220154 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 386.65
//
Query:       CTQ28179.1  [L=72]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       201  (0.0112109); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 598.49
//
Query:       CTQ28180.1  [L=432]
Description: Oxalate/formate antiporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-37  126.8  51.6    1.2e-20   73.8  32.2    2.2  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8  32.2   6.5e-25   1.2e-20      15     255 ..      49     282 ..      33     292 .. 0.80
   2 !   62.1  21.7   2.3e-21   4.1e-17       5     172 ..     244     420 ..     242     431 .. 0.89

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 6.5e-25
       MFS_1  15 lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslw.lllvlrvlqGlgagalfpagaali 110
                 ++++l+  la  lg+   e++  ++l  +++ ++s++ Grl+++fG+rr++ +g ++ + + ++l+ a  ++l  l+lv  ++ Glg+g+++ +++ l+
  CTQ28180.1  49 VWTLLTKPLAAKLGVGLPELQVTFSLLIILQTFFSPFQGRLVEKFGPRRLIAIGTVMAGMS-WVLS-AqvNGLAtLWLVYGCMGGLGTGIVYIGVVGLM 145
                 445554468999*************************************************.8888.335999999*********************** PP

       MFS_1 111 adwfpkeergraigllsagfslGailg.pllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpv 208
                 ++wfp+ +rg+a g ++ag+++Gai++  +++  l+++ g + ++  ++i+++l++ l+   l  +pp+ + + +++    +  +++++  +++l++p 
  CTQ28180.1 146 VKWFPQ-QRGFAAGAVAAGYGMGAIITtFPISLSLTTN-GLEHTMTTFGILFALVGFLASQGLKLPPPAVSQPVSQTV--VQSSRSFTS--REMLRQPL 238
                 ******.*****************99889999999955.788898888888888877766666666666666666666..568888888..9******9 PP

       MFS_1 209 lwillialllfffgfsglltllplylqevlgls.glllaglllallal 255
                 +w+++++++++++   ++++ + ++  e++g+s + +  g  +a+l l
  CTQ28180.1 239 FWLMFAMMAMMSTSGLMVTSQMAVF-AEDFGISqA-VVFG--MAALPL 282
                 9977777777766666677777777.*******43.4444..333333 PP

  == domain 2  score: 62.1 bits;  conditional E-value: 2.3e-21
       MFS_1   5 aflsalarsilgpalpl.alaedlgispse......igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa...sslw.lllvlr 92 
                 a++++++ s l+++  +   aed+gis ++      + l+lt+  ++ +++ +++G++sdrfGr  +++++++l +++ ++l++a    +l  +ll + 
  CTQ28180.1 244 AMMAMMSTSGLMVTSQMaVFAEDFGISQAVvfgmaaLPLALTIDRFTNGLTRPLFGFISDRFGREQTMFIAFALEGVA-MMLWLAcreDPLLfVLLSGV 341
                 6889999999******99*******99999866655666888888899******************************.66665568866666999999 PP

       MFS_1  93 vlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllll 172
                 v+ G+g+  +f++  + ++d f  e+ ++ +g+l+++ ++G+i+g +l++ll+ +  gW++vf  + ++ ++ + l+l++l
  CTQ28180.1 342 VFFGWGE--IFSLFPSTLTDTFGSEHAASNYGWLYISQGIGSIFGGPLAALLYqHTHGWHVVFSCAIGLDFVTAALALWVL 420
                 *******..********************************************99999********999999999666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3489.76
//
Query:       CTQ28181.1  [L=178]
Description: Ribosomal-protein-serine acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-26   94.3   0.2    1.3e-26   94.0   0.2    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    1.7e-10   41.1   0.1    2.3e-10   40.8   0.1    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.9e-07   30.3   1.9    1.5e-06   27.9   0.5    2.4  2  Acetyltransf_8   Acetyltransferase (GNAT) domain
    7.7e-07   29.4   0.0    8.9e-07   29.2   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    3.3e-05   23.8   0.1    5.5e-05   23.1   0.1    1.3  1  FR47             FR47-like protein
    0.00059   20.2   0.6     0.0014   19.0   0.2    1.7  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.014   15.3   0.5      0.021   14.8   0.5    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
      0.022   14.3   0.1       0.04   13.5   0.0    1.4  2  GNAT_acetyltran  GNAT acetyltransferase


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.2   5.6e-30   1.3e-26       1     138 []       9     149 ..       9     149 .. 0.90

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 5.6e-30
  Acetyltransf_3   1 RLlLrplteeDleal.felrsdpevmrylpe.pltleeaeewlera.waeeseeeg.ygwaivlkdtgv.iGsvglrdleeedeeaelgymlaps 90 
                     RLlLr+++ eDl+ + + +r+ pev r+ ++ ++   ea++++e+   ++ +e+e+ +++a++ +++g+  G+vg++ l++ ++ aelg+++ p+
      CTQ28181.1   9 RLLLRRFRTEDLPSFsH-YRNLPEVARFQSWtHYGMTEATAFYEQQrSQAFAEDESwFQLAVEIQANGAlAGDVGIHFLDHGRQ-AELGMTFSPA 101
                     9**************55.9*********888888888888888866655566667757799988888877*******9999987.********** PP

  Acetyltransf_3  91 fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     ++ +Gya+ea+ra++ ++fe+l  +rl av+d++N++ i++le lGf+
      CTQ28181.1 102 YQHQGYAREAMRAVMALLFEQLAHHRLTAVVDTRNTGAIKLLEGLGFR 149
                     ***********************************************6 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.1     1e-13   2.3e-10      19     117 .]      48     148 ..      23     148 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1e-13
                     HHHHHHHHHHHSTTC...EEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHH CS
  Acetyltransf_1  19 aseeefeesfsleae...gllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaa 108
                     a++e ++  ++ e+e    l v ++ +g l+G ++++  ++  g+ a++ ++  sp+y+++G++++ ++a++  ++e+   +++ + v+  n++a
      CTQ28181.1  48 AFYEQQRSQAFAEDEswfQLAVeIQANGALAGDVGIHFLDH--GRQAEL-GMTFSPAYQHQGYAREAMRAVMALLFEQlAHHRLTAVVDTRNTGA 139
                     333332222333333133333378888**************..777777.9***************************6669998888888**** PP

                     HHHHHHTTE CS
  Acetyltransf_1 109 irlYeklGF 117
                     i+l+e lGF
      CTQ28181.1 140 IKLLEGLGF 148
                     ****77**9 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.18     4e+02       4      39 ..      18      54 ..      16      64 .. 0.69
   2 !   27.9   0.5   6.7e-10   1.5e-06      75     142 ..      76     153 ..      64     155 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.18
                    GGHHHHHHHCTSCCCHHHH-----H.HHHHHHHHHHC CS
  Acetyltransf_8  4 aDlellhrWmnrprvaewweeagtl.eevrellakld 39
                    +Dl+ +++  n p+va++   ++   +e  +++++ +
      CTQ28181.1 18 EDLPSFSHYRNLPEVARFQSWTHYGmTEATAFYEQQR 54
                    7999999999999999886544433355555555544 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 6.7e-10
                     --TT-EEEEEE.......ES...SHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEE CS
  Acetyltransf_8  75 aepgdrGiHll.......ig...eaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekeke 142
                     a  gd+GiH+l       +g    +++  +g++++ +ra++++lf++ +  r  +  d rN+ ai+lle +Gf++e +
      CTQ28181.1  76 ALAGDVGIHFLdhgrqaeLGmtfSPAYQHQGYAREAMRAVMALLFEQLAHHRLTAVVDTRNTGAIKLLEGLGFRREAH 153
                     56677777777433333333445577789*********************************************9876 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0     4e-10   8.9e-07       2     154 ..      13     168 ..      12     169 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 4e-10
  Acetyltransf_4   2 raateeDakeilaiyaeyvvntaitfeyevssveefekfleal.d.....sekeyvflvae..sdrivGyaylgqfkkrakdwkaelsvylaerd 88 
                     r  + eD+ ++   ++ ++v +++ +   ++ ++e+  f e+         e ++ + v+   +++++G   +  ++      +ael + +   +
      CTQ28181.1  13 RRFRTEDLPSFSHYRNLPEVARFQSWT--HYGMTEATAFYEQQrSqafaeDESWFQLAVEIqaNGALAGDVGIHFLDH---GRQAELGMTFS-PA 101
                     677888888888888888888887777..6666666666666533445212334444444366899999888886655...78899999996.79 PP

  Acetyltransf_4  89 nnkeglgrelidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiDmi 154
                      +++g++re + a++  l  +   ++l+a +   n+ +i++++ lGF+ ++  ++ i  +g+w D+ 
      CTQ28181.1 102 YQHQGYAREAMRAVMALLfEQLAHHRLTAVVDTRNTGAIKLLEGLGFRREAHYRQNIFFKGEWGDEY 168
                     ***************9999*************9******************************9985 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   2.4e-08   5.5e-05      27      82 ..      96     153 ..      88     157 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.4e-08
                 EEE-GGG-SSSHHHHHHHHHHHHHHH..S-S-EEEEEETT-HHHHHHHHHHT-EEEEE CS
        FR47  27 lqvlpehrrrGlgsrlvkalakeiae..rgktvllvvvasNtpsirlyeklGfekiee 82 
                 +   p  + +G+++   +a+ + + e  + + +++vv + Nt +i+l+e lGf+   +
  CTQ28181.1  96 MTFSPAYQHQGYAREAMRAVMALLFEqlAHHRLTAVVDTRNTGAIKLLEGLGFRREAH 153
                 5678999*****************997778999********************98755 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.1   2.4e+03      64      71 ..      45      52 ..      11      54 .. 0.71
   2 !   19.0   0.2   6.1e-07    0.0014      12      75 ..      75     149 ..      53     150 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.1
                    HHHHHHHH CS
  Acetyltransf_7 64 kaikfYek 71
                    +a +fYe+
      CTQ28181.1 45 EATAFYEQ 52
                    67889997 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 6.1e-07
                     TEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH......TT..SEEEEE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  12 gkivGfialslld...aeitrlaVdpeyrgkGiGraLlea......ae..kgiile.qlelnaekaikfYeklGFe 75 
                     g   G ++++ ld     + ++  +p+y+ +G++r+ ++a      ++  ++ +l+ ++ ++++ aik+ e lGF+
      CTQ28181.1  75 GALAGDVGIHFLDhgrQAELGMTFSPAYQHQGYAREAMRAvmallfEQlaHH-RLTaVVDTRNTGAIKLLEGLGFR 149
                     444455555555443334444999***************8555544113222.244444444449**********8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.5   9.2e-06     0.021      53     109 ..      93     151 ..      37     158 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.2e-06
  Acetyltransf_10  53 hisllfVdpeyrgqGigkaLleaveee.aekdgikl.eltvnasp.yavpfYeklGFkav 109
                      ++++   +p+y++qG++++ + av +  +e+  ++  +  v+  +  a+++ e lGF++ 
       CTQ28181.1  93 ELGMT-FSPAYQHQGYAREAMRAVMALlFEQLAHHRlTAVVDTRNtGAIKLLEGLGFRRE 151
                      33333.49*******************66666666588889999999**********985 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.9   6.5e+03      64      81 ..      50      67 ..      43      75 .. 0.62
   2 ?   13.5   0.0   1.8e-05      0.04     186     241 ..      96     155 ..      84     156 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.9
  GNAT_acetyltran 64 keekrfilvpqseeweel 81
                     +e++r  ++ ++e+w +l
       CTQ28181.1 50 YEQQRSQAFAEDESWFQL 67
                     455666666666666655 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.8e-05
  GNAT_acetyltran 186 idTkedyrrkgLAt....ivaaalileclkrglyPsWDaaneaSvaLaekLGYefekeYk 241
                          ++y+++g+A+    +v a l ++  +  l++  D++n+ +++L e LG+++e  Y+
       CTQ28181.1  96 MTFSPAYQHQGYAReamrAVMALLFEQLAHHRLTAVVDTRNTGAIKLLEGLGFRREAHYR 155
                      555799*******7333256666778888999************************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1357.69
//
Query:       CTQ28182.1  [L=192]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-13   50.1   0.2    4.4e-13   48.8   0.2    1.7  1  TetR_N       Bacterial regulatory proteins, tetR family
    0.00074   19.5   0.0     0.0015   18.6   0.0    1.5  1  HTH_7        Helix-turn-helix domain of resolvase
    0.00096   19.3   0.1     0.0021   18.2   0.0    1.5  2  HTH_Tnp_1_2  Helix-turn-helix of insertion element transposas
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.048   13.5   0.0    1.7  1  HTH_23       Homeodomain-like domain
      0.023   14.9   0.0      0.041   14.1   0.0    1.4  1  TetR_C_6     BetI-type transcriptional repressor, C-terminal
      0.032   14.4   0.0      0.063   13.4   0.0    1.5  1  HTH_AraC     Bacterial regulatory helix-turn-helix proteins, 
      0.062   13.4   0.1       0.13   12.3   0.1    1.5  1  HTH_22       HTH domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.2   1.7e-16   4.4e-13       1      47 []       8      54 ..       8      54 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 1.7e-16
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                Il  A  lf+++Gy++ ++++IA++AG+sk ++Yry+++Ke+L++a+
  CTQ28182.1  8 ILRHASTLFNREGYQSPSIERIAEHAGISKMTFYRYYADKEALILAI 54
                8999****************************************996 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   5.8e-07    0.0015      23      44 ..      25      46 ..      19      47 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.8e-07
                -STTTSSSS---SSSS--SS-- CS
       HTH_7 23 siskIAkevnisRsTvYRylad 44
                si  IA+  +is++T+YRy ad
  CTQ28182.1 25 SIERIAEHAGISKMTFYRYYAD 46
                7999***************988 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   8.1e-07    0.0021      15      66 ..      12      65 ..       3      73 .. 0.73
   2 ?   -2.9   0.0       2.8     7e+03      73     103 ..     131     162 ..     120     169 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.1e-07
                 HHHHHHHHHH--S-HHHHHHHHTS-HHHHHHHH.H-HHHHHH.HHHHHHHHHHT CS
  HTH_Tnp_1_2 15 aaellvendyekltldeiaeevgvsrsTlykWk.kkkeFiey.vnelaeeflee 66
                 a  l   + y+  +++ iae+ g+s+ T+y++  +k++ i   +++  +ef+++
   CTQ28182.1 12 ASTLFNREGYQSPSIERIAEHAGISKMTFYRYYaDKEALILAiLKQKESEFMQD 65
                 4444455669999*******************9778888755045555556654 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.8
                  HHHHHHHHSSS-.-HHHHHHHHHHTT--EEEE CS
  HTH_Tnp_1_2  73 kaLlrkilkgrs.svkAieLylkrrgeltdkk 103
                  + +l ++lk+ + +  A+ +++   g +  ++
   CTQ28182.1 131 RDILLQVLKPEPaERVAMMMVMLIDGAIAAQQ 162
                  55555666666654446666666666555554 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.9e-05     0.048      19      38 ..      25      44 ..      25      51 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.9e-05
      HTH_23 19 svreIAreLgvsrrTvyrwl 38
                s+++IA++ g+s++T yr+ 
  CTQ28182.1 25 SIERIAEHAGISKMTFYRYY 44
                789***************95 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.6e-05     0.041      31      86 ..     107     157 ..     102     178 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
                 HHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSTHHHHHHHHHHHHHHH CS
    TetR_C_6  31 aeaardpelaelqrenyarlrsnlrallaelaegglradadaeaaAerlaAlidGL 86 
                  + a++p+++e+++++   l + +r++l ++++     ++ ae++A +++ lidG 
  CTQ28182.1 107 EYGASSPAIREQCSRFKSLLWQFFRDILLQVLK-----PEPAERVAMMMVMLIDGA 157
                 567899***************************.....*****************7 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.5e-05     0.063       6      27 ..      22      42 ..      18      44 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.5e-05
                SCT--HHHHHHHTTSSHHHHHH CS
    HTH_AraC  6 stnltiediAdelgfSrsyFsr 27
                +++ +ie+iA+++g+S ++F+r
  CTQ28182.1 22 QSP-SIERIAEHAGISKMTFYR 42
                555.9***************98 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   5.2e-05      0.13      43      61 ..      25      43 ..      23      44 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.2e-05
      HTH_22 43 avekvAekLgiSraTvYry 61
                ++e +Ae+ giS+ T Yry
  CTQ28182.1 25 SIERIAEHAGISKMTFYRY 43
                899***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1396.59
//
Query:       CTQ28183.1  [L=366]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-36  124.9   0.0    4.5e-36  124.3   0.0    1.3  1  Haem_oxygenas_2  Iron-containing redox enzyme
  ------ inclusion threshold ------
       0.16   11.9   0.0        2.1    8.2   0.0    2.1  2  ExsD             Antiactivator protein ExsD
       0.21   10.7   0.0       0.29   10.2   0.0    1.2  1  Phytoreo_Pns     Phytoreovirus nonstructural protein Pns10/11


Domain annotation for each model (and alignments):
>> Haem_oxygenas_2  Iron-containing redox enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   7.5e-40   4.5e-36       3     176 ..     165     338 ..     163     340 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 7.5e-40
  Haem_oxygenas_2   3 flrqrapyklvfgdwl.alvhsrltdrevkrallenlsEElGdgdlernHvelyrrllkalGldeeplealpel.petlalinlfeavalsrrl 94 
                      f++  ++++l f d++ ++++ +l+  e ++++++nl++E G+g+ e  Hv+ly++llk  ++   +++++  + ++ la +n+f   +++r++
       CTQ28183.1 165 FFKSDSALNLLFFDLVaMGLVGSLP--ETRAEIAQNLWDEIGQGSTEITHVNLYKDLLKRRNIALPDNHFAHLYeWQGLAGYNAFMLGGVNRQH 256
                      6677777888888888466666677..******************************************************************* PP

  Haem_oxygenas_2  95 lgallGallalEllvsletlklaeelrelgldeeapeyfdlHvtiDnaHaamaleaviellateepeeqedvlegawrrlql 176
                      +++ lG+++++Ell +++++kl++++r++gl+e++++y+ +H+t+D  Ha  +l++vi ++ +++p+  e+v++ga+ rlq+
       CTQ28183.1 257 YYKSLGVMAMTELLDPPQYEKLVAGCRRIGLSERDVHYYAEHITVDIGHADGWLNNVIVPIGKKHPAAMEEVFFGAALRLQT 338
                      ********************************************************************************97 PP

>> ExsD  Antiactivator protein ExsD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00036       2.1       3      38 ..       5      40 ..       3      48 .. 0.90
   2 ?    1.4   0.0     0.042   2.5e+02     197     237 ..     193     233 ..     161     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00036
        ExsD  3 eegiinekqlslLqRlLpRevvdsLlksewlkrrlr 38
                ++g+i ++q +++ Rl   e++d+Ll+s+ l  +l 
  CTQ28183.1  5 DNGVIGSDQTAVMARLALDELIDQLLHSNALSLKLT 40
                689*************************99887765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.042
        ExsD 197 sEaLeelWdalitlendleaakkvkkWlkerslclaqDefy 237
                 +E+ ++lWd + +   ++  ++  k  lk r++ l+  +f 
  CTQ28183.1 193 AEIAQNLWDEIGQGSTEITHVNLYKDLLKRRNIALPDNHFA 233
                 78899*******************************99995 PP

>> Phytoreo_Pns  Phytoreovirus nonstructural protein Pns10/11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   4.9e-05      0.29     252     287 ..     214     249 ..     190     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4.9e-05
  Phytoreo_Pns 252 ddvkdllsrttvfspdhaysavilwrgwastykell 287
                   +  kdll+r  +  pd +++++  w+g a   + +l
    CTQ28183.1 214 NLYKDLLKRRNIALPDNHFAHLYEWQGLAGYNAFML 249
                   4569***********************998777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2981.76
//
Query:       CTQ28184.1  [L=304]
Description: Permease of the drug/metabolite transporter (DMT) superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-36  124.3  30.6    3.5e-19   69.3  12.6    2.0  2  EamA      EamA-like transporter family
      0.001   18.5   4.3       0.59    9.4   0.2    3.0  3  TPT       Triose-phosphate Transporter family
  ------ inclusion threshold ------
       0.42    9.8   4.4        9.3    5.3   1.5    2.5  2  UAA       UAA transporter family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3  10.0   1.8e-20   1.1e-16       3     136 ..       2     135 ..       1     136 [. 0.96
   2 !   69.3  12.6   5.8e-23   3.5e-19       2     134 ..     151     289 ..     150     292 .. 0.90

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 1.8e-20
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsle 101
                 ++ll+ laalfw+ ++v+  +l++ v+p+ +t  r+ + ++ll +++  +    + l + +  ++++l l g v ++l ++++l++tsa na++++s +
  CTQ28184.1   2 PYLLLTLAALFWGGNYVVGHVLVQGVDPILMTEARWALTALLLGLLYRRQIAGSRHLLRANAPAVVVLTLCGQVSFPLTLYIGLQTTSALNAAIYMSAT 100
                 6899********************************9999999888888888889999***************************************** PP

        EamA 102 PvftlilsvlllgekltlkqllgivlillGvllil 136
                 P ++l++  l+++ +++ + +lg++++ lGv+++l
  CTQ28184.1 101 PSMVLLINRLFFRDPVSGRNWLGVAFSTLGVMILL 135
                 ********************************987 PP

  == domain 2  score: 69.3 bits;  conditional E-value: 5.8e-23
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegkl.....aklslkdwlll.lllgllgtvlafllffyalkktsasna 94 
                 +g+l+a+ +al+wa+y  l +   r+++   +++v++l+++++l++i  ++  ++     a ++   +l+  ++l ++++ la+l++++++ +++a++ 
  CTQ28184.1 151 IGDLWAMGSALSWALYCSLLRLKDRRIPANGFVAVSSLLGALILVPIVIFWLMRHpaqdwAAWREPFFLSGlAYLVIFPSWLAYLFWNKGIATIGATRG 249
                 799*****************************************99988888877667554444444555449************************** PP

        EamA  95 slitslePvftlilsvlllgekltlkqllgivlillGvll 134
                  ++t+++P+   +ls+l+l+ +++ ++l+++++i++G+ +
  CTQ28184.1 250 EIYTHIIPLSGGVLSILFLHTQPQAWHLFSALFIMVGIGI 289
                 *************************************976 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   0.00012      0.73     237     288 ..      82     133 ..      24     135 .. 0.89
   2 ?   -0.5   0.0       0.1   6.1e+02     174     199 ..     177     202 ..     167     249 .. 0.75
   3 !    9.4   0.2   9.9e-05      0.59     102     138 ..     257     293 ..     250     296 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00012
         TPT 237 ymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvfl 288
                 y  L+ +s++  ++  ++   +v+ +  l+f++pvs  n +G+a +++Gv++
  CTQ28184.1  82 YIGLQTTSALNAAIYMSATPSMVLLINRLFFRDPVSGRNWLGVAFSTLGVMI 133
                 6678889999999999999999****************************85 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.1
         TPT 174 ldalnlfaiitilslllllPvallve 199
                 + a  + a+ ++l++l+l+P++++  
  CTQ28184.1 177 IPANGFVAVSSLLGALILVPIVIFWL 202
                 55566677888899999999998764 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 9.9e-05
         TPT 102 PiFtvilsrlllgeklsllvylsLlpivgGvalasvt 138
                 P+   +ls+l+l  +++ + + s l i++G+ ++s+ 
  CTQ28184.1 257 PLSGGVLSILFLHTQPQAWHLFSALFIMVGIGICSLE 293
                 777789****************************985 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   1.5    0.0016       9.3     233     296 ..      68     132 ..      39     137 .. 0.82
   2 ?    4.7   0.1    0.0025        15     105     138 ..     262     295 ..     252     301 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0016
         UAA 233 lnvltqyvcik.gVlilisefgaltvtlvltlRKfvslllSillFknpltlqhlvgtllVflgll 296
                 +++l++ v+     +i  ++++al +++ +++   + ll+  l+F+ p++   ++g+++  lg++
  CTQ28184.1  68 VLTLCGQVSFPlTLYIGLQTTSALNAAIYMSATPSMVLLINRLFFRDPVSGRNWLGVAFSTLGVM 132
                 55555555554135566788999999999****************************99888876 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0025
         UAA 105 ilGililgkrYsllqylsvllltlGviiftllsa 138
                 +l+il+l+ + + +   s+l++ +G+ i++l + 
  CTQ28184.1 262 VLSILFLHTQPQAWHLFSALFIMVGIGICSLEKR 295
                 567888888889999***************9554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2491.55
//
Query:       CTQ28185.1  [L=410]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-44  152.9  63.5    2.4e-37  128.7  38.4    2.0  2  MFS_1       Major Facilitator Superfamily
    1.7e-34  119.5  24.3    4.9e-25   88.3   7.0    2.1  2  Sugar_tr    Sugar (and other) transporter
    2.1e-07   30.2  17.6    0.00017   20.6   0.8    3.1  2  MFS_1_like  MFS_1 like family
    0.00054   19.0   3.2     0.0045   15.9   0.5    2.3  2  MFS_5       Sugar-tranasporters, 12 TM
  ------ inclusion threshold ------
       0.15   10.2   6.7       0.17   10.1   0.4    2.2  2  BT1         BT1 family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.7  38.4   6.8e-41   2.4e-37       5     347 ..      19     347 ..      15     350 .. 0.84
   2 !   38.0  17.2   2.4e-13   8.7e-10      20     175 ..     235     390 ..     233     403 .. 0.82

  Alignments for each domain:
  == domain 1  score: 128.7 bits;  conditional E-value: 6.8e-41
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslw.lllvlrvlqGlgaga 101
                   l a+++++l ++l+  +a++++++  e+ l++ l  ++  v++l++Gr +++fGr+++l+l +++f+++ ll ++  +++  l+++lrvl G+++g+
  CTQ28185.1  19 WTLDAFDFFLLVFLLS-DIAHSFHVDLEEVTLAILLTLAVRPVGALIFGRAAEKFGRKPILMLNIVFFSAFeLLSAA--APSLmLFFLLRVLYGVAMGG 114
                 5688999999999**9.******************************************************666666..56666*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpaw 200
                 ++ ++ +l+ +  p++ rg++ gl++ag+ +G++l++++ gll ++lgWr++f+i a+  ll+     +++ +e+++ +  + + +    + ++l+p  
  CTQ28185.1 115 IWGVASSLAMETIPDRSRGLMSGLFQAGYPFGYLLAAVAYGLLFEQLGWRGMFVIGAAPVLLLPF---IYFCVEESPVWQAARQNK----ESTALLP-- 204
                 **************************************************************966...888899999999988888....8888888.. PP

       MFS_1 201 kallkdpvlwillialllfffgfsg...lltllplylqevlgls..glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglall 294
                   l+++  l  +l+ ++l+++++++   +  l p++l+ ++g+   ++ ++++ + +++++g   ++++g ls ++grr+++++a ll+l +  ++a++
  CTQ28185.1 205 -VLRSHWKL--CLYLVVLMAAFNFFshgTQDLYPVFLKVQHGFEpkTVSIIAVCYNIASIIG---GVFFGSLSEKIGRRKAIMIAALLALPVIPLWAFA 297
                 .44444444..33333333322222366****************665555555555555555...*************999999999999999999999 PP

       MFS_1 295 avtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagsl 347
                 + +   ++l ++ +l+ f +  +++ + +++++l+p++ ++ + g++  +g+l
  CTQ28185.1 298 SGS---LALGAGAFLMQFMVQGAWGVIPTWLNELVPANTRAVLPGFVYQLGNL 347
                 999...55556888899977778*************99999888887755554 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 2.4e-13
       MFS_1  20 plalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkee 118
                 p +l+ ++g+ p ++++++++y ++++++ +++G+ls+++Grr+ +++++ll +  + l++fas++ +l ++ +l+ ++  +++ ++ +++ +++p + 
  CTQ28185.1 235 PVFLKVQHGFEPKTVSIIAVCYNIASIIGGVFFGSLSEKIGRRKAIMIAALLALPVIPLWAFASGSLALGAGAFLMQFMVQGAWGVIPTWLNELVPANT 333
                 5578889999**********************************666666666655244446799999******************************* PP

       MFS_1 119 rgraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpee 175
                 r+   g+++   +l a + + l + +a++ g  +   ++ +++ +a+v+ +l ++ +
  CTQ28185.1 334 RAVLPGFVYQLGNLLASVNATLQASIAQHHGHNYGLAMALVAGTVAIVITVLTFFGR 390
                 *******************************66665555555555555444444333 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   7.0   1.4e-28   4.9e-25      49     206 ..      48     199 ..      12     208 .. 0.91
   2 !   37.2   9.4   4.3e-13   1.5e-09      46     186 ..     247     381 ..     214     393 .. 0.79

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 1.4e-28
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlai 147
                 +l   ++l+++ +G+l++g ++++fGRk++l+  +v+f++  +l+aaa+   s+ ++++ Rvl G+++G++ ++++ ++ E  p++ Rg + +l+q ++
  CTQ28185.1  48 TLAILLTLAVRPVGALIFGRAAEKFGRKPILMLNIVFFSAFELLSAAAP---SLMLFFLLRVLYGVAMGGIWGVASSLAMETIPDRSRGLMSGLFQAGY 143
                 5666778899***************************************...9********************************************** PP

                 HHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHH CS
    Sugar_tr 148 tfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgkeee 206
                  fG l+aa+ +  l +     gwr ++ + ++p lll ++ + ++ESP +   ++++e 
  CTQ28185.1 144 PFGYLLAAVAYGLLFEQ---LGWRGMFVIGAAPVLLLPFIYFCVEESPVWQAARQNKES 199
                 *******9876555433...47*****************************99998873 PP

  == domain 2  score: 37.2 bits;  conditional E-value: 4.3e-13
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyq 144
                 +++++i+ ++++ +iiG++f+g l++++GR+k+++iaa+l++  + l a+a       +l +g +l+ + v +a +++P++++E+ p++ R  l     
  CTQ28185.1 247 KTVSIIAVCYNIASIIGGVFFGSLSEKIGRRKAIMIAALLALPVIPLWAFAS---GSLALGAGAFLMQFMVQGAWGVIPTWLNELVPANTRAVL---PG 339
                 47899*************************************9999999999...789999******************************765...56 PP

                 HHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHH CS
    Sugar_tr 145 laitfGilvaaifglglnktsnadgwrillglqlvpalllli 186
                 + +++G l+a++  +  + + ++ g  + l+++lv   + ++
  CTQ28185.1 340 FVYQLGNLLASVNATLQASIAQHHGHNYGLAMALVAGTVAIV 381
                 778889999988888888888866766666666665533332 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   6.2   1.2e-06    0.0045     282     383 ..      67     167 ..      11     169 .. 0.79
   2 !   20.6   0.8   4.8e-08   0.00017      24      77 ..     236     290 ..     216     298 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-06
  MFS_1_like 282 klleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksai 380
                 +  ek+G   +l++ ++++ +  ll a+  ++ l +++ vL+g+++g +w++a + + + +p++ ++ + gl+++  + +G  l +++ Gll+++ + +
  CTQ28185.1  67 RAAEKFGRKPILMLNIVFFSAFELLSAAAPSLMLFFLLRVLYGVAMGGIWGVASSLAMETIPDRSRGLMSGLFQAG-YPFGYLLAAVAYGLLFEQLGWR 164
                 44689***********9998877777777********************************************976.6889999999999999877766 PP

  MFS_1_like 381 flF 383
                  +F
  CTQ28185.1 165 GMF 167
                 666 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 4.8e-08
  MFS_1_like  24 iylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsav 77 
                 ++lk + g++++ + ii +   + si++  ++g l++++g+rk+++i++ll+  v
  CTQ28185.1 236 VFLKvQHGFEPKTVSIIAVCYNIASIIGGVFFGSLSEKIGRRKAIMIAALLALPV 290
                 6788799****************************************99987655 PP

>> MFS_5  Sugar-tranasporters, 12 TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.1    0.0076        27      88     144 ..      64     121 ..      39     180 .. 0.73
   2 !   15.9   0.5   1.3e-06    0.0045      39     108 ..     215     286 ..     189     387 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0076
       MFS_5  88 ivgsladkfgrkracltyailyila..citkhsgeykvlmigrvlggiatsllysafes 144
                 i g  a+kfgrk   l+  i++  a   ++   + + ++++ rvl g+a   ++    s
  CTQ28185.1  64 IFGRAAEKFGRKPI-LMLNIVFFSAfeLLSAAAPSLMLFFLLRVLYGVAMGGIWGVASS 121
                 66999*****9976.555555544412578889999999999*****998877765554 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.3e-06
       MFS_5  39 yllvyslava..gdwlqgpyvyalyesygldkgdieilfiagfgssllfgtivgsladkfgrkracltyail 108
                 yl+v + a        q  y  +l  ++g++ + + i+ +    +s++ g + gsl++k gr++a ++ a+l
  CTQ28185.1 215 YLVVLMAAFNffSHGTQDLYPVFLKVQHGFEPKTVSIIAVCYNIASIIGGVFFGSLSEKIGRRKAIMIAALL 286
                 44444433321133456667778999*************************************998876654 PP

>> BT1  BT1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   1.2    0.0056        20      76     171 ..      88     182 ..      77     201 .. 0.65
   2 ?   10.1   0.4   4.7e-05      0.17     116     165 ..     239     288 ..     198     297 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0056
         BT1  76 ygllpakeasakvaaafillsslgkaivdvlsdalvselarqspkag.psLvSwiwlvsavGgiiasvlsGpLldagktrisvlvsaalqll.tvvvf 171
                 + ll+a+  s  +  +f+l   +g+a+  +   a     +   p  + + +  +  +   +G ++a+v  G L ++   r ++++ aa  ll  ++ f
  CTQ28185.1  88 FELLSAAAPS--LMLFFLLRVLYGVAMGGIWGVASS-LAMETIPDRSrGLMSGLFQAGYPFGYLLAAVAYGLLFEQLGWRGMFVIGAAPVLLlPFIYF 182
                 4444444444..445555666778888888766543.333334444403455567777889**********************999885544044444 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 4.7e-05
         BT1 116 rqspkagpsLvSwiwlvsavGgiiasvlsGpLldagktrisvlvsaalql 165
                 + ++   p+ vS i ++  + +ii+ v+ G L+++   r ++++ a+l+l
  CTQ28185.1 239 KVQHGFEPKTVSIIAVCYNIASIIGGVFFGSLSEKIGRRKAIMIAALLAL 288
                 55555668899*********************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3037.23
//
Query:       CTQ28186.1  [L=535]
Description: conserved hypothetical protein; putative FAD/NAD(P)-binding domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-28   99.6   0.0    2.9e-28   98.8   0.0    1.4  1  NAD_binding_9  FAD-NAD(P)-binding
    0.00021   21.0   0.8     0.0022   17.6   0.0    2.5  2  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.013   15.7   0.0      0.033   14.4   0.0    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
       0.27   10.4   0.4        1.4    8.1   0.0    2.0  2  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0   6.5e-32   2.9e-28       1     155 [.       5     164 ..       5     165 .. 0.92

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 6.5e-32
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvwrtdq.seelllNvpasemslftddpptfaeWlrerga.......leeaeeldp 87 
                    aivG Gp+G++++ +L++r   ++pl itlf++ +++g g+++++d+ ++++l N+++ e+++++    t+ +Wl+++++       le  ++l++
     CTQ28186.1   5 AIVGVGPTGIYTFYELVKR---GEPLAITLFEKeAQAGVGMPYSDDNtAAQMLANIASIEIPPID---LTYLQWLQQQSDdwlaargLE-RHALHE 93 
                    8******************...7**********7788*********9899************997...6*********99887655333.79**** PP

  NAD_binding_9  88 ddfvpRalyGrYlrdlfeellarl.pegvtvevhra.evvdleeradgqavlladg.aslaadaVvLAlGh 155
                    ++f+pR ++G+Y rd+f  l++r+   g+ ++v+++ ev+d++ + +g a+++++  + + +d V +A+Gh
     CTQ28186.1  94 RQFLPRVILGEYYRDRFLYLVERArDVGFVISVCEScEVTDIAVQSTGIAIHTDSAaDPVIVDLVAIATGH 164
                    ************************6668999999888****************8883579*********** PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.9e-07    0.0022       2      33 ..       4      39 ..       3      51 .. 0.92
   2 ?    0.3   0.0     0.091   4.1e+02     152     202 ..     113     164 ..      71     193 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.9e-07
                EEEECTSHHHHHHHHHHHHTT....EEEEESSSSTT CS
         DAO  2 vviiGGGiiGlstAyeLarrg....Vtllekgdiag 33
                ++i+G G +G+ t yeL +rg    +tl+ek+ +ag
  CTQ28186.1  4 IAIVGVGPTGIYTFYELVKRGeplaITLFEKEAQAG 39
                9*******************999*********8887 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.091
                 HHHHHHHTT..-EEEESECEEEEEEEETCEEEEE.EECTEEE.EEEEEEEE--GG CS
         DAO 152 laraaealG..veilegtevtgleeedgkvwgve.rttpgen.daadavVnaaGa 202
                 l ++a++ G  + + e +evt++  +    +g+  +t + +  +++d v +a+G+
  CTQ28186.1 113 LVERARDVGfvISVCESCEVTDIAVQ---STGIAiHTDSAADpVIVDLVAIATGH 164
                 566666666534778899****9665...34444333334444578999999996 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   7.4e-06     0.033       1      32 [.       6      39 ..       6      57 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.4e-06
                   EE--SHHHHHHHHHHHCC..TEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gfdvlllekrdrlG 32
                   IvG G +G ++ y+L k+   + ++l+ek  + G
     CTQ28186.1  6 IVGVGPTGIYTFYELVKRgePLAITLFEKEAQAG 39
                   9****************96577********9999 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00031       1.4      20      57 ..       4      42 ..       1      53 [. 0.92
   2 ?   -0.2   0.1      0.11   4.8e+02     131     168 ..     131     164 ..     122     173 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00031
                EEEE--SHHHHHHHHHHHHC.TTS-EEEEESSSS--TTT CS
        Thi4 20 vvivGaGssGLtaayylakk.pdlkvailersvspGGGa 57
                ++ivG G++G+ + y l k+   l ++++e++   G G+
  CTQ28186.1  4 IAIVGVGPTGIYTFYELVKRgEPLAITLFEKEAQAGVGM 42
                89******************888*********9999887 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.11
                 EEEEEEEEEHHHHTCTTTSS.-B-EEEEEEEEEE--GS CS
        Thi4 131 gvaGvvinwtlvelahdtqscvDPlvirakvvvdatGh 168
                 +v+ + +++t +++ h t+s+ DP +++  +   atGh
  CTQ28186.1 131 EVTDIAVQSTGIAI-H-TDSAADPVIVDLVA--IATGH 164
                 56777777777776.4.6999***9998655..58888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3741.01
//
Query:       CTQ28187.1  [L=366]
Description: NADPH dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-64  216.8   0.0    5.5e-64  216.6   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil
      2e-06   27.1   0.0    2.8e-06   26.6   0.0    1.2  1  Dus           Dihydrouridine synthase (Dus)
    0.00028   20.3   0.0    0.00041   19.8   0.0    1.2  1  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
  ------ inclusion threshold ------
      0.064   12.8   0.0       0.96    9.0   0.0    2.2  2  MR_MLE_C      Enolase C-terminal domain-like


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.6   0.0   1.2e-67   5.5e-64       2     337 ..       4     338 ..       3     343 .. 0.89

  Alignments for each domain:
  == domain 1  score: 216.6 bits;  conditional E-value: 1.2e-67
                   CCS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT.-EEE CS
  Oxidored_FMN   2 LFkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavheng.skvv 97 
                   LF    ig+ tL nRiv+apm++++a + g +++ +   +  q a  + +l+i ea++v+p +++ +++ g+wd+e  +++r ++e++++     ++
    CTQ28187.1   4 LFSATRIGQLTLDNRIVIAPMCQYSADE-G-KATSWHRIHLGQLAFSGAGLLILEATAVEPAGRISPGDLGLWDDETENALRGVVEDIRAWSpIRLG 98 
                   899999******************8855.5.5899******************************************************9761579* PP

                   EEEE--GGGS..SCSTCEC.......SS.ESSSSSTTT-.S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT-- CS
  Oxidored_FMN  98 vqlwhlGreakseyladqe.....vdspsdpvaldaqeeesaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksnk 189
                   +ql h+Gr+a      + +      d+  + va  a  ++ +    + el++ + + +  +fv  A ra   gf  +e h+a+GYLl+qFlsp sn+
    CTQ28187.1  99 IQLGHAGRKASCAAPWQGGhqlalNDGGWQTVAPSAVAFHDGDRA-PAELSHADLARIKAAFVASALRAQRLGFELIELHAAHGYLLHQFLSPLSNQ 194
                   *********975554444466788777776677666666666666.89************************************************* PP

                   --STTSSSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEECE--STTS--HHHHHHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCCTT.HHH CS
  Oxidored_FMN 190 rtDeygGslenRarFllevvdaVkeavgeer.vgyRlSpedvvekgldfaetaqkivllkelekrlkdgkklalvhaaeprkrgagsvrteqe.knt 284
                   r DeygGslenR+r++lev +a++eavg+ + vg+RlS+ d ve g d    +++ + l+ l+ + + ++++ l       +++a  v   ++  ++
    CTQ28187.1 195 RRDEYGGSLENRMRYPLEVFKAIREAVGNTMaVGVRLSATDWVEGGWDCEQSIKFSQQLETLGSDYIHVSSGGLS------PQQAITVGPGYQlPFA 285
                   *******************************************99999988888888888888888855555543......3566778888888999 PP

                   HHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHC CS
  Oxidored_FMN 285 efvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkk 337
                     +++++  p+i+vg i+d+++a+ ++++g+adL+a++R++l dp ++  ++ 
    CTQ28187.1 286 RDIRQQVAIPVIGVGLITDPQQAEAALENGDADLIALARAVLYDPHWPWHAAA 338
                   ***********************************************987765 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   6.3e-10   2.8e-06      90     222 ..     190     332 ..     189     353 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 6.3e-10
                 TTEEETTEEEGGGGGGSHHHHHHHHHHHHCCSSS-EEEEEESESS......TTTC.HHHHHHHHHHCT-SEEEEESS..ECCCTT-C..G--CHHHHHH CS
         Dus  90 PskkvtrggaGaaLlrkpdlvaqivkavvkaveiPvtvkirigid......deeenalelakiveaaGaqaltvHgR..traqnyeg..tadweaIkev 178
                 P  ++ r ++G +L +  +   ++ ka+++av++ + v +r+          ++e+++++ + +e  G + + v     +++q  +     ++   +++
  CTQ28187.1 190 PLSNQRRDEYGGSLENRMRYPLEVFKAIREAVGNTMAVGVRLSATdwveggWDCEQSIKFSQQLETLGSDYIHVSSGglSPQQAITVgpGYQLPFARDI 288
                 66677888999999999999999999*******999999998654334444359999*************9999766679999999887889999**** PP

                 HHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTH CS
         Dus 179 kqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwl 222
                 +q+v ipvi+ G I+d+++a+a+le+  ad +  +r+ l++P  
  CTQ28187.1 289 RQQVAIPVIGVGLITDPQQAEAALENGDADLIALARAVLYDPHW 332
                 **************************99*************965 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   9.1e-08   0.00041     118     161 ..     272     315 ..     263     328 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 9.1e-08
                   SEEEEESGGGHHHHCTSTTS...EEEEESS--SHHHHHHHCTT. CS
  G3P_antiterm 118 davevlPglvpkvikeikkelkipiiaGGLietkedveealkaG 161
                   +a+ v Pg+   ++++i++++ ip+i  GLi++ ++ e+al++G
    CTQ28187.1 272 QAITVGPGYQLPFARDIRQQVAIPVIGVGLITDPQQAEAALENG 315
                   6899**************************************98 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00021      0.96      26      73 ..     206     257 ..     158     261 .. 0.71
   2 ?    1.6   0.0     0.038   1.7e+02      90     126 ..     285     321 ..     276     338 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00021
                 HHHHHHHHHHHHHHHHTTTSTSEEEEE-TTT....SBHHHHHHHHHHHGGGT CS
    MR_MLE_C  26 dvaedvervravreavgpgddvdlmvDanqa....wdlatAirvareleeld 73 
                 +++  +e+++a+reavg+   v +++ a       wd+++ i++ ++le l+
  CTQ28187.1 206 RMRYPLEVFKAIREAVGNTMAVGVRLSATDWveggWDCEQSIKFSQQLETLG 257
                 56667899********9877777766654334444*************7776 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.038
                 HHHHHHHH.SSEEEESTTSSSHHHHHHHHHHTSESEEE CS
    MR_MLE_C  90 laelrara.sipiaagEslysradfrelleagavdivq 126
                  +++r ++  ip+++   ++++++++++le+g +d + 
  CTQ28187.1 285 ARDIR-QQvAIPVIGVGLITDPQQAEAALENGDADLIA 321
                 68899.66699*********************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2775.73
//
Query:       CTQ28188.1  [L=177]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0039   17.3  33.6       0.13   12.4  10.5    2.6  3  DivIVA          DivIVA protein
     0.0048   17.4  34.2      0.023   15.2   8.7    3.1  3  YtxH            YtxH-like protein
      0.005   16.7  20.3      0.047   13.6  20.4    2.0  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
  ------ inclusion threshold ------
      0.036   14.3   8.7      0.047   13.9   8.7    1.2  1  Cor1            Cor1/Xlr/Xmr conserved region
      0.067   13.6  35.3      0.053   13.9  24.7    2.3  2  V-ATPase_G_2    Vacuolar (H+)-ATPase G subunit
      0.089   13.4  24.0          2    9.1   2.5    3.1  3  DUF883          Bacterial protein of unknown function (DUF883
       0.38    9.6   6.6       0.45    9.4   6.6    1.1  1  PA26            PA26 p53-induced protein (sestrin)
       0.56   10.6   6.5        1.7    9.0   6.5    1.9  1  Calc_CGRP_IAPP  Calcitonin / CGRP / IAPP family
        1.3    6.9   5.5        1.6    6.6   5.5    1.2  1  Prominin        Prominin
        1.4    8.9  17.7        2.7    8.0   3.7    2.7  2  Phasin          Poly(hydroxyalcanoate) granule associated pro
        2.3    5.6  23.9          3    5.2  23.9    1.1  1  DUF3584         Protein of unknown function (DUF3584)
        2.5    7.8   4.7        3.9    7.1   4.7    1.3  1  DUF4239         Protein of unknown function (DUF4239)
        2.9    7.8  14.6        1.3    8.9  12.1    1.7  1  DASH_Spc19      Spc19
        3.8    7.9  18.3        3.3    8.1   4.3    2.1  2  YlqD            YlqD protein
        4.4    6.7  17.8        5.7    6.3  17.8    1.1  1  Golgin_A5       Golgin subfamily A member 5
        4.5    5.9  10.2        5.3    5.7  10.2    1.2  1  SAPS            SIT4 phosphatase-associated protein
        7.3    5.9  30.7        9.2    5.6  12.8    2.5  2  vATP-synt_E     ATP synthase (E/31 kDa) subunit


Domain annotation for each model (and alignments):
>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3  13.8   0.00026      0.27      66     123 ..      44     101 ..      38     104 .. 0.91
   2 !   12.4  10.5   0.00012      0.13      75     121 ..      93     139 ..      90     141 .. 0.93
   3 !   11.3  11.3   0.00026      0.27      72     124 ..     112     164 ..     106     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00026
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  66 kktlvvaqetaeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeieelkrqa 123
                  + l  a++ ae++k +a+++a+ i ++A+k+ +++ ++a  ea++++++   +k +a
  CTQ28188.1  44 DNKLDKAKDNAEQMKDAAADKAQAIKQDADKQIDTLKSQADAEADRLKDQASAIKAEA 101
                 566668999*******************************************999876 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00012
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  75 taeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeieelkr 121
                  a  +ka+a k+a+ i ++A+++a+++ ++a++e ++i +e  ++k 
  CTQ28188.1  93 QASAIKAEADKKADAIAQQAKAQADAVKQNAKQESDRIVKEAGQIKD 139
                 68899************************************999986 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00026
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  72 aqetaeevkanakkeaeliikeAekkaekiveeaeeeakkiaeeieelkrqar 124
                 a+  a+ vk+nak+e++ i+keA + +++ + +a++  +++a++++ ++ + +
  CTQ28188.1 112 AKAQADAVKQNAKQESDRIVKEAGQIKDNAIGDANQLSAEAASKTKAIQDSIA 164
                 667899**************************999999999999998887655 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   8.7   2.1e-05     0.023      29      74 ..      42      83 ..      39      84 .. 0.80
   2 !    8.8   9.9    0.0022       2.3      28      73 ..      88     133 ..      79     135 .. 0.74
   3 ?    6.7   2.3      0.01        11      28      69 ..     128     169 ..     127     172 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.1e-05
        YtxH 29 dlkekaddlkekakelleeakekakekaedlkekvkekadelkekv 74
                ++ +k+d++k++a+++    k+ a++ka+++k+++++++d lk+++
  CTQ28188.1 42 KVDNKLDKAKDNAEQM----KDAAADKAQAIKQDADKQIDTLKSQA 83
                5667777777777555....6666******************9976 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0022
        YtxH  28 kdlkekaddlkekakelleeakekakekaedlkekvkekadelkek 73 
                 ++lk++a+++k  a++ ++ ++++ak +a+++k+++k+++d+++++
  CTQ28188.1  88 DRLKDQASAIKAEADKKADAIAQQAKAQADAVKQNAKQESDRIVKE 133
                 4677777777777777777777777888888888888888888765 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.01
        YtxH  28 kdlkekaddlkekakelleeakekakekaedlkekvkekade 69 
                 ++++++a ++k++a   +++++  a++k+++++++++++ + 
  CTQ28188.1 128 DRIVKEAGQIKDNAIGDANQLSAEAASKTKAIQDSIAKDKQN 169
                 579999********99999999999***********999876 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6  20.4   4.4e-05     0.047      51     164 ..      48     164 ..      40     171 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.4e-05
                     HHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHH...HHHHHHHHHHH--- CS
  Apolipoprotein  51 arlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerhvealkarlapyveelrq...klaerleelkesla 142
                     ++ ++ +++++   ++++++++q+ +  ++ l+ +++a+a+ l++q ++ ++e+ +++++ +++ ka+ ++  ++++q   ++ +++ ++k+++ 
      CTQ28188.1  48 DKAKDNAEQMKDAAADKAQAIKQDADKQIDTLKSQADAEADRLKDQASAIKAEADKKADAIAQQAKAQADAVKQNAKQesdRIVKEAGQIKDNAI 142
                     55555566666666666666666666666666666666666666666666666666666666666666666666666544455555555555555 PP

                     --..-----SSSHHHHHHHTS- CS
  Apolipoprotein 143 phaeeveerlssrveelrekle 164
                       a ++ ++++s+ ++++++ +
      CTQ28188.1 143 GDANQLSAEAASKTKAIQDSIA 164
                     5566666666666666666555 PP

>> Cor1  Cor1/Xlr/Xmr conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   8.7   4.5e-05     0.047      13     111 ..      42     141 ..      40     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.5e-05
        Cor1  13 fvkaslkssnekieqvwktqqeerqklkeeysqqfltlfqqwetdvqkvkeqeeklsnlfqqqqkllqqarvvqeqrlk.eikqlydqFlksledLeke 110
                  v++ l++ + + eq+  +  ++ q++k++  +q+ tl +q + + +++k+q+  +    +++   + q+  +q +  k ++kq +d+ +k+  +++++
  CTQ28188.1  42 KVDNKLDKAKDNAEQMKDAAADKAQAIKQDADKQIDTLKSQADAEADRLKDQASAIKAEADKKADAIAQQAKAQADAVKqNAKQESDRIVKEAGQIKDN 140
                 57899999**************************************************999999999999999998887369************99987 PP

        Cor1 111 h 111
                  
  CTQ28188.1 141 A 141
                 5 PP

>> V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9  24.7     5e-05     0.053      16      94 ..      42     123 ..      38     127 .. 0.87
   2 ?    2.0  11.4      0.27   2.8e+02      24      75 ..     112     170 ..     110     177 .] 0.45

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH CS
  V-ATPase_G_2  16 eLdqrlEaArkeaereveaAeaeAarilreAeakakalqaeye...qelaeevarireeararaeaeaqavrkraearlqqA 94 
                   + d++l++A+ +ae+  +aA   A++i ++A++++  l+++ +   ++l+++ ++i++ea+++a+a aq+++++a a  q+A
    CTQ28188.1  42 KVDNKLDKAKDNAEQMKDAAADKAQAIKQDADKQIDTLKSQADaeaDRLKDQASAIKAEADKKADAIAQQAKAQADAVKQNA 123
                   6799**********************************9987622267899*********************9998755555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.27
                   HHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G_2  24 ArkeaereveaAeaeAarilreA.......eakakalqaeyeqelaeevarireearar 75 
                   A+ +a +  ++A++e +ri++eA         +a++l ae + ++++    i+++ ++ 
    CTQ28188.1 112 AKAQADAVKQNAKQESDRIVKEAgqikdnaIGDANQLSAEAASKTKAIQDSIAKDKQNA 170
                   55555555555555555555555110000044555555555555555544444444444 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.5    0.0019         2      35      66 ..      42      73 ..      40      74 .. 0.92
   2 ?    9.1  17.4    0.0019         2       2      68 ..      49     115 ..      48     125 .. 0.86
   3 ?    2.9   4.5      0.16   1.7e+02      24      65 ..     111     152 ..     109     175 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0019
      DUF883 35 rleerlerarerlrdaeeavaerakeaaeaad 66
                +++++l++a+++++++++a+a++a+++ ++ad
  CTQ28188.1 42 KVDNKLDKAKDNAEQMKDAAADKAQAIKQDAD 73
                78999*********************999987 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0019
      DUF883   2 eleaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddy 68 
                 +++++ e++ + +++ +++ +++a++++++l+++++++++r+++++++ + ++ ++a+++a++a+  
  CTQ28188.1  49 KAKDNAEQMKDAAADKAQAIKQDADKQIDTLKSQADAEADRLKDQASAIKAEADKKADAIAQQAKAQ 115
                 6778889999999999999999**********************************99999998754 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.16
      DUF883  24 eageeaeelRerleerlerarerlrdaeeavaerakeaaeaa 65 
                 +a+ +a++++++++++ +r  +++ + ++++   a++ +++a
  CTQ28188.1 111 QAKAQADAVKQNAKQESDRIVKEAGQIKDNAIGDANQLSAEA 152
                 555666666666666666666666665555555544444333 PP

>> PA26  PA26 p53-induced protein (sestrin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   6.6   0.00043      0.45     164     258 ..      28     125 ..      23     170 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00043
        PA26 164 hslasfvfgcglepeldlesskklksasas...anekedsseeeeeelerkaaaeaeaevealmermkklqeeedeeeeaseeelserfekeesesll 258
                  +l+   fgc+   ++d++ +k+ ++a +    a++k+++ ++  +++ ++  ++a ae + l+++  +++ e+d+++ a  ++ +++ + +++++ +
  CTQ28188.1  28 SALCLTLFGCDDASKVDNKLDKAKDNAEQMkdaAADKAQAIKQDADKQIDTLKSQADAEADRLKDQASAIKAEADKKADAIAQQAKAQADAVKQNAKQ 125
                 57899999999888888877765555444423234777778888888889999999999*********999999998844333333333222222211 PP

>> Calc_CGRP_IAPP  Calcitonin / CGRP / IAPP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   6.5    0.0016       1.7       1      71 [.      18     100 ..      18     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0016
  Calc_CGRP_IAPP   1 Mkllkfspllvilvlvqagslqaaplrsale.lldsatlkeeesrlllarlvrd.lvqlkaeeleqekeaee..........s 71 
                     Mkl+  ++l  +l l+ +g+ +a +++ +l+   d+a+  ++ +    +++++d  +q+++ + ++ +ea++          +
      CTQ28188.1  18 MKLWNKTLLASALCLTLFGCDDASKVDNKLDkAKDNAEQMKDAAADKAQAIKQDaDKQIDTLKSQADAEADRlkdqasaikaE 100
                     9***6666666********************9999999999999999999999944566655555555555465444444440 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.5    0.0015       1.6     273     377 ..      44     147 ..      13     172 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0015
    Prominin 273 rdglrgvkrdlnqalsnlCqseeCskilssleiekldtskcldqlpnvdevlealeevletnlssivkeglarlneipekvknqtaevvpdlkkalakg 371
                  + l ++k++ +q+      +++  k   +++i +l+++++  + + ++++ +a++   +++ + i++++ a+ +++++ +k++ +++v++  +  +++
  CTQ28188.1  44 DNKLDKAKDNAEQMKDAAADKAQAIKQDADKQIDTLKSQADA-EADRLKDQASAIKAEADKKADAIAQQAKAQADAVKQNAKQESDRIVKEAGQIKDNA 141
                 344444444444443333332333333333333334443333.55666666666666666666666666666666666666666666666555554444 PP

    Prominin 372 reqikk 377
                     ++
  CTQ28188.1 142 IGDANQ 147
                 444444 PP

>> Phasin  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.7    0.0026       2.7      33      85 ..      40      91 ..      37      95 .. 0.76
   2 ?    5.4   6.9     0.016        17      51      86 ..      97     132 ..      91     169 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0026
      Phasin 33 GsklfeaLvkeGeklekktkkvaeekleevresvkskveevkekaeeqwdkle 85
                +sk+ ++L k+  ++e+  k++a++k++++++ ++++++++k++a+++ d+l 
  CTQ28188.1 40 ASKVDNKLDKAKDNAEQ-MKDAAADKAQAIKQDADKQIDTLKSQADAEADRLK 91
                56666666666555555.57888888999999999999999999999999886 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.016
      Phasin  51 tkkvaeekleevresvkskveevkekaeeqwdklek 86 
                  k++a++k++++ +++k++++ vk++a+++ d++ k
  CTQ28188.1  97 IKAEADKKADAIAQQAKAQADAVKQNAKQESDRIVK 132
                 57899************************9998744 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  23.9    0.0029         3     623     743 ..      41     166 ..      37     176 .. 0.46

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0029
     DUF3584 623 kqaeeelkqlnaeleeakravaeaatalkn.ardtlerlqnekesekdklekaiaerkqqaeeqlqkldaqlkql.eeqqkaaleelkedlseerlekk 719
                 ++++++l++++ ++e+ k a+a++a+a+k+ a++++  l+++ ++e+d+l+ +  + k++a ++ + +++q+k+  ++ +++a++e ++ ++e+   k 
  CTQ28188.1  41 SKVDNKLDKAKDNAEQMKDAAADKAQAIKQdADKQIDTLKSQADAEADRLKDQASAIKAEADKKADAIAQQAKAQaDAVKQNAKQESDRIVKEAGQIKD 139
                 455666666666666666666666666555133344456666666666666666666666666666666665543033333344444433333332222 PP

     DUF3584 720 ak...wqevvgeldeqlaelkkaieaa 743
                 ++    +++++e   + ++++  i++ 
  CTQ28188.1 140 NAigdANQLSAEAASKTKAIQDSIAKD 166
                 221112333333333333333333333 PP

>> DUF4239  Protein of unknown function (DUF4239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.7    0.0037       3.9      55     135 ..      54     134 ..      40     141 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0037
     DUF4239  55 rkeakaliadyvktivseerslvrasrgelslkasseltkLldllaevkgdassesaaveell....seiaqltelRakRisdea 135
                 +++ k  +ad+++ i ++    +    ++l+ +a+ e ++L d++  +k +a+++ +a ++      +++ q  ++ ++Ri +ea
  CTQ28188.1  54 AEQMKDAAADKAQAIKQDADKQI----DTLKSQADAEADRLKDQASAIKAEADKKADAIAQQAkaqaDAVKQNAKQESDRIVKEA 134
                 55555666666666666666666....677788*****************99999665544443677889999999999999886 PP

>> DASH_Spc19  Spc19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  12.1    0.0013       1.3      54     139 ..      65     155 ..      57     165 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0013
                 HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH......HHHHT-XXXXXXXXXXXX....XXXX........XXXXXXXX CS
  DASH_Spc19  54 kaslaeeiePqieellekaekeleklerreetLkaklelqegrlsnaesskkeeeeseeskeeeeeeenkeeekskkk........ltkeeler 139
                  ++++++ + qi++l ++a++e ++l+ + +++ka++++++  + ++++ ++++ +++ ++e+++  ++  +   +k+        l++e + +
  CTQ28188.1  65 AQAIKQDADKQIDTLKSQADAEADRLKDQASAIKAEADKKADAIAQQAKAQADAVKQNAKQESDRIVKEAGQ---IKDnaigdanqLSAEAASK 155
                 5678899999************************************76666665555555554444333332...2222344444444444444 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.3    0.0031       3.3      25      80 ..      43      98 ..      38     101 .. 0.77
   2 ?    7.5  16.2    0.0046       4.9      16      88 ..      67     139 ..      54     164 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0031
        YlqD 25 lqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkqll 80
                +++++++++ + +q++  a    + ik+   +qi+++++q+++e ++++++ + ++
  CTQ28188.1 43 VDNKLDKAKDNAEQMKDAAADKAQAIKQDADKQIDTLKSQADAEADRLKDQASAIK 98
                56777788888888888888888888887778889999999988888888887765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0046
        YlqD  16 klKeelqqqlqaqieqldkelqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkqllqqleqvqk 88 
                 ++K+++ +q+++ ++q+d e ++L+ qa  + +e+ k+  + ++++++q+++ k++ +++ +++ ++  q++ 
  CTQ28188.1  67 AIKQDADKQIDTLKSQADAEADRLKDQASAIKAEADKKADAIAQQAKAQADAVKQNAKQESDRIVKEAGQIKD 139
                 5788888888888899999999999888888888888877777777777777777777777777666666654 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  17.8    0.0054       5.7      14     121 ..      63     168 ..      46     172 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0054
   Golgin_A5  14 qkAarILQsKekliasLkegsgeeglesstalsaeldelkqerdllreel.qklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakee 111
                  kA+ I Q+ +k i++Lk+++ +e+ +    l+++ +++k+e d   + + q+++ q + ++++ ++  ++  +ea +++++     +ql++e ++k +
  CTQ28188.1  63 DKAQAIKQDADKQIDTLKSQADAEADR----LKDQASAIKAEADKKADAIaQQAKAQADAVKQNAKQESDRIVKEAGQIKDNAIGDANQLSAEAASKTK 157
                 69****************887666544....466666677777766665524667788888888888899999*******9999999999999887765 PP

   Golgin_A5 112 .veaelerlke 121
                  +++ +++ k+
  CTQ28188.1 158 aIQDSIAKDKQ 168
                 15556666555 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  10.2     0.005       5.3     262     350 ..      48     144 ..      15     173 .. 0.50

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.005
        SAPS 262 tseeealedvsdeaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdasseesalaeeteeklr...........kkpvvG 349
                 ++++++ e+++d+a+++ +a ++d +++ + ++++++++a+     +d++++ +ae ++++d+  ++++ +a+a +++ k +           k+  +G
  CTQ28188.1  48 DKAKDNAEQMKDAAADKAQAIKQDADKQIDTLKSQADAEADR---LKDQASAIKAEADKKADAIAQQAKAQADAVKQNAKQEsdrivkeagqiKDNAIG 143
                 334444444444444444444444444444444444444444...222222233333333333333333333333333333312233334444444444 PP

        SAPS 350 D 350
                 D
  CTQ28188.1 144 D 144
                 4 PP

>> vATP-synt_E  ATP synthase (E/31 kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  10.2    0.0098        10       3      42 ..      58      97 ..      56     107 .. 0.79
   2 ?    5.6  12.8    0.0087       9.2       2      61 ..     108     167 ..     107     171 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0098
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH CS
  vATP-synt_E  3 rqeAeekAeeIkakaeeefeiekaklveeeeekieeayek 42
                 ++ A +kA++Ik++a+++++  k+++ +e+   +++a + 
   CTQ28188.1 58 KDAAADKAQAIKQDADKQIDTLKSQADAEADRLKDQASAI 97
                 7889************************998888776543 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0087
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  vATP-synt_E   2 IrqeAeekAeeIkakaeeefeiekaklveeeeekieeayekkeKqaelqkkiaiSnalnk 61 
                  I q+A+++A+++k++a++e + +++++ + + ++i  a +     a+ +k i+ S a+ k
   CTQ28188.1 108 IAQQAKAQADAVKQNAKQESDRIVKEAGQIKDNAIGDANQLSAEAASKTKAIQDSIAKDK 167
                  99**************************************************99988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2715  (0.151431); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 1158.31
//
Query:       CTQ28189.1  [L=298]
Description: putative transcriptional regulator (LysR family) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-36  125.0   3.1    3.4e-36  124.6   3.1    1.2  1  LysR_substrate  LysR substrate binding domain
    1.2e-19   70.0   0.1    6.2e-19   67.7   0.2    2.0  2  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0015   18.3   0.2     0.0029   17.4   0.2    1.4  1  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.041   13.9   0.0       0.11   12.5   0.0    1.8  2  HTH_29          Winged helix-turn helix
      0.096   12.8   0.1        0.2   11.8   0.1    1.5  1  HTH_28          Helix-turn-helix domain
       0.13   12.2   0.0       0.35   10.8   0.0    1.7  1  MarR            MarR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   3.1   1.1e-39   3.4e-36       3     205 ..      90     291 ..      88     295 .. 0.96

  Alignments for each domain:
  == domain 1  score: 124.6 bits;  conditional E-value: 1.1e-39
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSE CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gepv 96 
                     + rg+Lr+ +p ++ar l+ p l++f +++Peve+ l+++d     d+l++g lD+ +r g++ed +++ar L+e  l  +asp++ Lar g+p 
      CTQ28189.1  90 PIRGQLRVDMPIAFARLLVIPHLPDFYQAHPEVEIVLSSSD--VRRDMLRDG-LDCLLRVGDLEDGDYVARSLGEVALTTCASPGY-LARyGAPA 180
                     679**************************************..*********.*********************************.******** PP

                     CGGGGCTSEEEEESTTST...HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEE CS
  LysR_substrate  97 sledLadeplilleegsg...lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvy 187
                     +ledL+ +  + + ++s+   + ++++   + +++++ + l +++ e   a+ +aGlG     r+++++++++g+lv  +lp++p+p r+l+l+y
      CTQ28189.1 181 TLEDLQSHLAVNWVNSSSrqiMPWRFQTPEGIRQIAIPGKLVLDNSEVFTAAGLAGLGMLQGMRFFLQPYIDSGQLV-EVLPDFPAPrRPLSLLY 274
                     *******9999997666668999****999999********************************************.9999999999******* PP

                     ETTCCCHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflr 205
                     ++++ ls +vr f+d+l+
      CTQ28189.1 275 PHRH-LSHKVRVFADWLQ 291
                     ***8.***********97 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.2   2.1e-22   6.2e-19       2      60 .]       7      65 ..       6      65 .. 0.97
   2 ?   -0.9   0.0      0.54   1.6e+03      34      53 ..     182     201 ..     178     211 .. 0.81

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 2.1e-22
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                + +++f++++++gsf++AAe L +  pav++++++LE+e gv+L++Rt+r+l LT++Ge
  CTQ28189.1  7 ENIKIFIEIVDAGSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTRRLYLTPEGE 65
                689*******************************************************7 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.54
                 HHHHHHHHTS-SEEESSSEE CS
       HTH_1  34 ikrLEeelgvpLfeRtgrgl 53 
                 + +L ++l v +++ ++r++
  CTQ28189.1 182 LEDLQSHLAVNWVNSSSRQI 201
                 778999*******9988874 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   9.7e-07    0.0029      13      50 ..      19      56 ..      15      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9.7e-07
                T-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHH CS
      HTH_30 13 gnisatAkaLhvHrnTlryRLrrieellgldlddpddr 50
                g+ +++A+ L +Hr  +++ L+++e+  g+ l +  +r
  CTQ28189.1 19 GSFAQAAENLQIHRPAVTKALQQLEQESGVRLLQRTTR 56
                8999*************************998765444 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.7e-05      0.11      10      60 ..      17      63 ..       8      66 .. 0.74
   2 ?   -3.7   0.0       4.3   1.3e+04      17      32 ..     161     176 ..     157     177 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.7e-05
      HTH_29 10 eGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprnrlsee 60
                +++s  +q+A++l+++r+ v ++l   e++    ll +r ++r++  l++e
  CTQ28189.1 17 DAGS-FAQAAENLQIHRPAVTKALQQLEQESGVRLL-QRTTRRLY--LTPE 63
                4555.89**********************9944455.35567665..5555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.3
      HTH_29  17 qiAkllglsrrtvyrw 32 
                 ++A  ++ s+ +  r+
  CTQ28189.1 161 EVALTTCASPGYLARY 176
                 6788899999888886 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.6e-05       0.2      12      41 ..      18      48 ..       9      57 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.6e-05
      HTH_28 12 GhsvreaArelgisrrtvyrWikryee.gGi 41
                 +s ++aA+ l+i+r  v + ++++e+  G+
  CTQ28189.1 18 AGSFAQAAENLQIHRPAVTKALQQLEQeSGV 48
                56889**********************6665 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.35      24      44 ..      25      45 ..      20      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
                HHHHTS-HHHHHHHHHHHHHT CS
        MarR 24 akklgvskstvtrvldrLekk 44
                a+ l++++++vt++l +Le++
  CTQ28189.1 25 AENLQIHRPAVTKALQQLEQE 45
                7899***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2174.33
//
Query:       CTQ28190.1  [L=325]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-54  183.4   7.4    8.7e-53  179.8   7.4    1.9  1  NMO             Nitronate monooxygenase
    7.6e-06   25.2   2.3    1.3e-05   24.4   2.0    1.4  1  FMN_dh          FMN-dependent dehydrogenase
    0.00032   20.2   0.1    0.00067   19.2   0.1    1.4  1  His_biosynth    Histidine biosynthesis protein
     0.0008   18.5   7.1     0.0063   15.6   1.4    3.1  2  IMPDH           IMP dehydrogenase / GMP reductase domain
     0.0012   18.2   0.6      0.004   16.5   0.3    1.9  2  TMP-TENI        Thiamine monophosphate synthase
  ------ inclusion threshold ------
      0.048   12.8   0.1       0.15   11.3   0.1    1.8  1  NanE            Putative N-acetylmannosamine-6-phosphate epim
      0.089   13.0   0.6       0.31   11.3   0.0    2.1  2  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
      0.099   11.7   0.1       0.17   10.9   0.1    1.4  1  Dus             Dihydrouridine synthase (Dus)


Domain annotation for each model (and alignments):
>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.8   7.4   3.9e-56   8.7e-53       5     328 ..       7     323 ..       4     325 .] 0.87

  Alignments for each domain:
  == domain 1  score: 179.8 bits;  conditional E-value: 3.9e-56
         NMO   5 tellkikppvvqpgmggiskarLaaavsnaGgLGvla..sgylta...........DrlakeirkvkaltdkPfgvnlflpkkdaadraekykkeleea 90 
                   +l+i+ pvvq++ ++ + arL+aav naGgLGvl+  +  lta            ++++eirk k+lt+kPfgvnl     +++d+        + a
  CTQ28190.1   7 ARILGIEKPVVQGPLSWLTDARLVAAVGNAGGLGVLGpnA-GLTAatavstpeataEKMREEIRKTKQLTEKPFGVNLIPT--AENDI-------WTPA 95 
                 57899********************************954.444447788889999*********************9754..45666.......5667 PP

         NMO  91 alelnieegvrfyrkvevvldekvevvsfgfglp..teevvarlkeagvvli..ptissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLv 185
                  l +  eegv+              vv +g g+   ++ + ++lk+ag+ +i   +  + ++ r +e++GaD+++++G ++GG  +  +    g+f++v
  CTQ28190.1  96 ILPVIKEEGVK-------------VVVYTGYGDGslKPALFDELKAAGITIIyrDINPTPENSRRAEQAGADIIVATGFDEGGTLPGTA---LGTFTIV 178
                 8899999***9.............5666766654115778899***99876621578899*************************9455...57***** PP

         NMO 186 pqvldavd.iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesdakdahkkklleaklddteltsavsGrpaRalatelleeleeakiatlalpe 283
                 p ++dav+ +Pv+AaGGi d+rg  a+ alGA+gv  g+ f+ t es ++d +k+k++ a+  d+ l +     + Ral  +l   l     a ++  e
  CTQ28190.1 179 PLIVDAVQrVPVMAAGGITDARGARAVHALGAEGVFAGSVFISTIESRVPDSVKAKIVAANGLDLRLFRTLP-DYYRALPGKLSDTLVAMDRAGASKAE 276
                 ************************************************************999999999988.89*******99999986666666666 PP

         NMO 284 ahelakk...iraalveagnteegllwagqgidrldkiisvkeLiesL 328
                   +  ++   +r +++e+ nt++g +++g+gi+ ++ i sv+e++++L
  CTQ28190.1 277 LAQAMGGlrgMRLGMLEG-NTDDGYISVGAGIGNIHAITSVAEVVNQL 323
                 6555555566********.***************************99 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   2.0   5.8e-09   1.3e-05     226     304 ..     141     220 ..     127     232 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 5.8e-09
                 SHHHHHHHHHTTESEEEE-..-GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHH CS
      FMN_dh 226 taedakraveaGvdgivvS..NHGGRqldgapatidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpfl 304
                 t+e+ +ra +aG+d+iv    + GG    +a  t+ + p iv+av+ r++v++ gGi+    +    alGA++v+ G  f+
  CTQ28190.1 141 TPENSRRAEQAGADIIVATgfDEGGTLPGTALGTFTIVPLIVDAVQ-RVPVMAAGGITDARGARAVHALGAEGVFAGSVFI 220
                 78999***********9994447**999*****************8.***********999999999**********8776 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1     3e-07   0.00067     154     224 ..     146     220 ..     140     223 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3e-07
                   HHHHHTT-SEEEEEETTTTTTSS---H...HHHHHHHHHH.SSEEEEESS--SHHHHHHHHHTTCSEEEESHHHH CS
  His_biosynth 154 kkleelgageilltdidrdGtlsGpdl...eltkelaeav.kipviasGGvgsledlkelksegvdavivgsaly 224
                   +++e++ga  i+ t  d+ Gtl G  l   +++  + +av ++pv+a+GG+++    +++ + g+++v +gs++ 
    CTQ28190.1 146 RRAEQAGADIIVATGFDEGGTLPGTALgtfTIVPLIVDAVqRVPVMAAGGITDARGARAVHALGAEGVFAGSVFI 220
                   6899*********************97533567889999999*******************************96 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.4   2.8e-06    0.0063      28     245 ..       7     225 ..       3     234 .. 0.68
   2 ?    1.4   0.4     0.056   1.2e+02     166     206 ..     283     323 ..     265     325 .] 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.8e-06
                 STTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHH......HHHHHHHTSTTSXBXTTSXB-EEEEE-SST.THH..HHHHHHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx..xxxxxxxxxxx RF
       IMPDH  28 tkkiklniPlvsaamdtvtesemAialareGgigvihknlsieeqa......eevkkvkrspnaakdekgrllvgaavgvke.dal..ervkalveagv 117
                 ++ + ++ P+v  ++ + t++++  a+ ++Gg+gv+  n   ++ +      ++ +k++++ +++k+ +++      + + e d    + +  + e+gv
  CTQ28190.1   7 ARILGIEKPVVQGPLSWLTDARLVAAVGNAGGLGVLGPNAGLTAATavstpeATAEKMREEIRKTKQLTEKPFGVNLIPTAEnDIWtpAILPVIKEEGV 105
                 55667889999999999*****************99888544332200111123334443333333333333322333333312221133455667777 PP

                 SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-.SHHHHHHHHHTT-SEE.EE-SS-STTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 118 dvlvvdsahghsekvleavkeikkkveeveviaGnva.taegakaLieagadav.kvGiGpGsiCttrvvagvGvpqltAvaevaeaakkagvpviaDG 214
                  v+ v +  g  +      +e+k++   +++i  ++  t e  ++  +agad++   G   G      ++ g+  + +t v  +++a++   vpv+a G
  CTQ28190.1 106 KVV-VYTGYGDGSLKPALFDELKAAG--ITIIYRDINpTPENSRRAEQAGADIIvATGFDEGG-----TLPGTALGTFTIVPLIVDAVQ--RVPVMAAG 194
                 765.5678888888888888988776..88898888647888889999999975267777776.....467888888888888877765..58999999 PP

                 ---SHHHHHHHHHTT-SEEEESCCCTTBTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 215 GikysgdivkAlaaGadavmlGsllagteEs 245
                 Gi+  +      a+Ga+ v  Gs++ +t Es
  CTQ28190.1 195 GITDARGARAVHALGAEGVFAGSVFISTIES 225
                 9999999888889999999999999999998 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.056
                 T-SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHHHHCTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 166 gadavkvGiGpGsiCttrvvagvGvpqltAvaevaeaakka 206
                 g  +++ G+  G      +  g+G++ + A+++vae++++ 
  CTQ28190.1 283 GLRGMRLGMLEGNTDDGYISVGAGIGNIHAITSVAEVVNQL 323
                 56677777777777777888999***********9998875 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.47     1e+03      36      60 ..      58      83 ..      47      91 .. 0.78
   2 !   16.5   0.3   1.8e-06     0.004     106     177 ..     142     215 ..     139     219 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.47
    TMP-TENI 36 eldarellelaeklaalcrky.gvpl 60
                e++a++++e+++k ++l++k  gv+l
  CTQ28190.1 58 EATAEKMREEIRKTKQLTEKPfGVNL 83
                67789999999999999987546665 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.8e-06
    TMP-TENI 106 leeaeeaealgadYigvGpifpTdtKkdaeplgleglkelaeale.iPvvaiGGitlenvae.vleagadgvav 177
                 +e+ ++ae++gad i++  + +  t ++ +    + +  +++a++ +Pv+a GGit ++ a+ v + ga+gv  
  CTQ28190.1 142 PENSRRAEQAGADIIVATGFDEGGTLPGTALGTFTIVPLIVDAVQrVPVMAAGGITDARGARaVHALGAEGVFA 215
                 567899*************************************************9998655156889999975 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   6.5e-05      0.15      85     176 ..     123     219 ..     117     233 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.5e-05
                 HHHHHHH-.-EEEEE-S.SHHHHHHHHHTT-SEEE-TTTTSSTTS-..SS--HHHHHHHHHTT--..EEEES---SHHHHHHHHTT--SEEEE-HHH CS
        NanE  85 ikkikeky.qllmaDis.tleeglvakklGvdivGttlsGytkeeek.aepDfalvkalseaglk..viaeGrintPekakkaieiGvdavvvGsai 176
                 + ++k  + +++  Di  t e++  a+++G+di+ +t     ++    a   f++v  +++a  +  v+a G i     a+ +  +G++ v  Gs  
  CTQ28190.1 123 FDELKAAGiTIIYRDINpTPENSRRAEQAGADIIVATGFDEGGTLPGtALGTFTIVPLIVDAVQRvpVMAAGGITDARGARAVHALGAEGVFAGSVF 219
                 566677776677788864889999*********99985555555444678899999999998544449************************99975 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00014      0.31      18      56 ..      99     134 ..      55     141 .. 0.81
   2 ?   -2.2   0.1       2.1   4.8e+03      25      46 ..     298     321 ..     274     324 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
                     HHHHTT--EEEEEEBTTTB--HHHHHHHHHHHTTT-EEE CS
  Asparaginase_C  18 allkkgakGvvlegtGvGnlpsallealkeakargivvv 56 
                      + ++g+k vv  g+G G+l++al ++lk a   gi ++
      CTQ28190.1  99 VIKEEGVKVVVYTGYGDGSLKPALFDELKAA---GITII 134
                     333779*********************9998...66665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.1
                     -EEEEEEBTTTB--H..HHHHHHH CS
  Asparaginase_C  25 kGvvlegtGvGnlps..allealk 46 
                     +G +  g G Gn++   ++ e+++
      CTQ28190.1 298 DGYISVGAGIGNIHAitSVAEVVN 321
                     677777888888886556666555 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   7.6e-05      0.17     172     213 ..     175     216 ..     131     220 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.6e-05
                 CHHHHHHHHH-S.S-EEEESS--SHHHHHHHHHHH--SEEEES CS
         Dus 172 weaIkevkqavs.ipviaNGdIkdaedaqaileetGadgvmig 213
                 +  +  + +av+ +pv+a G+I+da+ a+a+++  Ga+gv +g
  CTQ28190.1 175 FTIVPLIVDAVQrVPVMAAGGITDARGARAVHAL-GAEGVFAG 216
                 5556667889999*******************99.*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2354.46
//
Query:       CTQ28191.1  [L=419]
Description: Hydantoinase/carbamoylase family amidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-27   95.2   0.4    5.6e-27   94.8   0.4    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    1.9e-08   34.3   0.0    3.1e-08   33.6   0.0    1.3  1  Peptidase_M28  Peptidase family M28
    4.8e-05   23.2   0.0    0.00018   21.4   0.0    1.8  2  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   0.4   9.3e-31   5.6e-27       1     206 [.      85     414 ..      85     415 .. 0.93

  Alignments for each domain:
  == domain 1  score: 94.8 bits;  conditional E-value: 9.3e-31
                    EEEEES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.....THHHHHHH....HHHT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxx....xxxx RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.....gGakalle....glee 87 
                    llgsHlD+V     ++           G+++G        gvlaa+e++++l+++g ++ + i+++ ++dEEg+r      G++ +++    +   
     CTQ28191.1  85 LLGSHLDTVR----NA-----------GRYDGM------LGVLAAIEVVQRLHQQGRRLAKAIEIVGFGDEEGTRfgitlLGSRGVTGtwpeS--W 157
                    79********....66...........999999......*********************************999999999999999966662..0 PP

                    ...............................TTCESEEEEEEEESSSBTCHSTETEEEE..................................... CS
                    ...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................... RF
  Peptidase_M20  88 ...............................rekvdavfelhieepgileagklaigvv..................................... 115
                                                    +++ a++elhie+++ le+ +la gvv                                     
     CTQ28191.1 158 lsqcdadgvsvaqalvnagldpariahaarhPRDIAAYLELHIEQGPCLEQAGLALGVVeaingarrlncrftgeaghagtvpmqhrkdalaaaae 253
                    445788888888999999999999999999988*************************************************************** PP

                    .......................................................................EEEEEEEEEESHEEECCHHHHHHHH CS
                    .......................................................................xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 116 .......................................................................kvevelleggapvtlndsplvkala 140
                                                                                           ++  e++ + a+++++ s+l ++l+
     CTQ28191.1 254 wmmqvenltrqhggnlvatvgtlrcapgavnvipgevqltldirgpqdapltalldellgeaqaiagrrqlRFAAEEYYRIAATACD-SHLQAVLS 348
                    ********************************************************************9887888878888888888.******** PP

                    HHHHHHHTSCEEEEEESSSBHTHHHHTTT.EEEEEEESS.GGCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 141 eaaeelfgekvelivsgpggtdarffagi.ptvmifgpg.sglaHspnEyvdledlekgikvlarlle 206
                    ea+ ++ g++  + +sg +g+da  +a+  p++m+f+++ +g +H+p E v  +d+  +i+++ r++e
     CTQ28191.1 349 EAVVAVQGRS-LTLPSG-AGHDAIAIAERwPSAMLFVRClGGVSHHPAESVTAADVGLAIDAFSRAVE 414
                    *****97855.444899.********6667*******9967**********************99987 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   5.1e-12   3.1e-08       1      82 [.      69     150 ..      69     175 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 5.1e-12
                    EEEEEESTTCE.SEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSG.....SSHHHHHHH CS
  Peptidase_M28   1 Nviatlegkat.devlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEa.....gllGSkafa 82 
                    N+ +++eg+++ +  +llg+H+D+v         G  D   gv a +e+++ l ++g+r+ + + ++ f+ EE       llGS+   
     CTQ28191.1  69 NICGRYEGQQEgAPAVLLGSHLDTVRN---A---GRYDGMLGVLAAIEVVQRLHQQGRRLAKAIEIVGFGDEEGtrfgiTLLGSRGVT 150
                    999*******9888************6...6...889*************************************99999999999766 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.53   3.1e+03      32      48 ..     107     123 ..      93     186 .. 0.73
   2 !   21.4   0.0     3e-08   0.00018       5     102 ..     221     316 ..     218     323 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.53
                 HHHHHHHCSCTTEEC.. CS
   M20_dimer  32 klarllaeledeegdia 48 
                 ++++++++l+++ ++ a
  CTQ28191.1 107 AAIEVVQRLHQQGRRLA 123
                 67888999998866655 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 3e-08
                 EEEEEEEEEE-B-EEGG..-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-C.CCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHH CS
   M20_dimer   5 GlaggkitvkgkagHsg..apgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGs.aknvipdeaeakidiRllpgedpeevleeieei 100
                 G+   +++++g+agH+g  + ++  +A+ ++a+ + + e+++++     + +    +v+++++   a nvip+e+++++diR ++   + ++l+e+   
  CTQ28191.1 221 GARRLNCRFTGEAGHAGtvPMQHRKDALAAAAEWMMQVENLTRQ-----HGGNLVATVGTLRCAPgAVNVIPGEVQLTLDIRGPQDAPLTALLDELLGE 314
                 77788999*********944577788***************766.....56************99*****************88877777777776555 PP

                 HT CS
   M20_dimer 101 le 102
                 ++
  CTQ28191.1 315 AQ 316
                 54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3066.81
//
Query:       CTQ28192.1  [L=413]
Description: Purine catabolism protein PucG [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-27   95.0   0.0    4.3e-26   91.8   0.0    1.9  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.056   12.7   0.0      0.095   12.0   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0   4.8e-30   4.3e-26       3     342 ..      16     359 ..      14     376 .. 0.85

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 4.8e-30
                  EBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHH.HHHHHHHHCCCC-TTTSEEEEETTSHG CS
  Aminotran_5   3 ldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtte.ainlvalslarslkpgdeivvteaehh 99 
                  l+ +++ +  ++Vl+a++ +           v+++   +t+ ++e+ +  + ++ +e+   ++ + Gt++ +i++++ls+   ++pgd+++v + +  
   CTQ28192.1  16 LMGPGPINADPRVLRAMSSQ----------LVGQYDPAMTHYMNEVMALYRGVFRTEN-RWTMLVDGTSRaGIEAILLSA---IRPGDKVLVPVFGRF 99 
                  67777777777777777777..........3455556679999**************7.99999******99********...9************** PP

                  GGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--.TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEE CS
  Aminotran_5 100 anlvpwqelakrtgakvkvipldeegeldldeleklln.ektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDfla 196
                  + l    e+a+r+ a+v+ i++ ++   ++d++e++++  +++l+   +  ++t ++qp++e+g++++++++l+ +Da++++g  p++++++++D ++
   CTQ28192.1 100 GHL--LCEIARRCRAEVHTIEVPWGEVFKPDQVEDAIKrVRPRLLLTVQGDTSTTMLQPLAELGEICRRHDVLFYTDATASLGGNPLETDAWQLDAVS 195
                  ***..789*****************************768********************************************************** PP

                  EETTT.TTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEE...............EHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHH CS
  Aminotran_5 197 fsghK.llgPtGiGvlyvrkellekleplllggemveevsleett...............faeapskfeaGTpnvagiiglgaaleyleeigleaiek 278
                  ++ +K l gP+G++ +  ++++ e ++      + +++   ++ +                   p ++++ T+ + ++ + ++ ++++ + gl++  +
   CTQ28192.1 196 AGMQKcLGGPSGTSPITLSPRMEEVIRRRRCIEQGIRTDAHHDGVdemiysnyfdlgmvmDYWGPERLNHHTEATSALFAARECARLILQEGLDNGIA 293
                  *****9999**********9999999544333333333222211123345555556655433458999999*************************** PP

                  HHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEE.TTCSHHHHHHHHHHT.TEEEEE..E-TTT CS
  Aminotran_5 279 hekelaeyllerlkslpgvrlygpdkaerrasivsfnf.kgvhaedvatlLdee.gIavrs..Ghhca 342
                  ++k   ++ll+++++++  ++ g d  ++ ++++ +++ +gv+ ++v++l+ e  gI++ +  G  + 
   CTQ28192.1 294 RHKLHGDALLKGIQAMGLETF-G-DLRHKMNNVLGVVIpNGVNGDQVRKLMLEDfGIEIGTsfGPLHG 359
                  ****************99988.7.78999999***999899**********9999**99776666555 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.1e-05     0.095      57     150 ..      82     180 ..      69     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.1e-05
                      HTTTTTT-EEEEESSS-THHH..HHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTE.EEEEEB-..GGGB--.-HHHHHHHHHHCT-EEEEE CS
  DegT_DnrJ_EryC1  57 algvgpgdeVIvpsltFvata..navlelgakpvfvDvdpdtynidpaaieaaitert.kaIlpVh..lyGqva.dmdalkaiaakhglkvieD 144
                         + pgd+V+vp ++ ++    + ++++ a++  ++v       +p+++e ai + + +  l+V   +   +   +++l +i+++h++ +  D
       CTQ28192.1  82 LSAIRPGDKVLVPVFGRFGHLlcEIARRCRAEVHTIEVPW-GEVFKPDQVEDAIKRVRpRLLLTVQgdTSTTMLqPLAELGEICRRHDVLFYTD 174
                      35789***********99975337899***********75.55689********9988688888852244444458999*************** PP

                      -TT-TT CS
  DegT_DnrJ_EryC1 145 aAhAlG 150
                      a  +lG
       CTQ28192.1 175 ATASLG 180
                      ***999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2793.54
//
Query:       CTQ28193.1  [L=245]
Description: putative amino acid transport protein (ABC superfamily, ATP_bind) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-36  124.6   0.0      5e-36  124.2   0.0    1.2  1  ABC_tran     ABC transporter
    6.2e-12   45.9   0.5    8.8e-06   25.7   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
      6e-10   38.9   0.1    1.2e-09   37.9   0.1    1.3  1  SMC_N        RecF/RecN/SMC N terminal domain
    3.2e-05   23.6   0.1      7e-05   22.5   0.1    1.5  1  AAA_29       P-loop containing region of AAA domain
    0.00031   21.0   0.5     0.0025   18.1   0.5    2.0  1  AAA_22       AAA domain
    0.00063   18.7   0.2        1.2    7.8   0.0    2.9  2  ABC_ATPase   Predicted ATPase of the ABC class
    0.00094   18.4   0.1     0.0063   15.7   0.1    1.9  1  NB-ARC       NB-ARC domain
      0.003   18.1   0.1     0.0075   16.8   0.1    1.7  1  AAA_23       AAA domain
     0.0053   16.5   0.0      0.013   15.2   0.0    1.6  1  AAA_30       AAA domain
     0.0054   17.1   0.1     0.0093   16.4   0.1    1.5  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
      0.012   15.6   0.2      0.024   14.5   0.2    1.5  1  RsgA_GTPase  RsgA GTPase
      0.019   14.7   0.0      0.029   14.1   0.0    1.3  1  AAA_15       AAA ATPase domain
      0.041   14.0   0.1      0.073   13.1   0.1    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
       0.05   12.9   0.1       0.36   10.1   0.0    2.0  2  ATPase       KaiC
      0.082   12.5   0.1       0.96    9.0   0.0    2.2  2  AAA_25       AAA domain
       0.13   12.2   0.1       0.32   10.9   0.1    1.6  1  NACHT        NACHT domain
       0.14   12.2   0.1         20    5.2   0.0    2.3  2  AAA_5        AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   0.0   4.8e-39     5e-36       1     137 []      19     167 ..      19     167 .. 0.90

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 4.8e-39
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTC... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxx... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren..........esdee... 84 
                 lk v+l++  ge++ i+G++G+GKStLl+++ gl+  +eG+i+l g  +++   + ++ +++ig+++q+ +lfp++t+ en          +s++e   
  CTQ28193.1  19 LKGVDLDIDMGEVISIIGRSGSGKSTLLRCINGLEGYQEGSIKLGGMTITNrdSQAREISRSIGMVFQNFNLFPHMTALENvmlaprrvlkKSQAEcre 117
                 789******************************************9999997878889999****************************9855555334 PP

                 .HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 .iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  ++++l+k+gl +    ++++ p++LSgGq+qrva+aral+  pk+ll+DE t+
  CTQ28193.1 118 lAQRMLEKVGLGD----RLDYYPANLSGGQQQRVAIARALAMSPKVLLCDEITS 167
                 4666666666655....889999****************************985 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   9.4e-07   0.00099       3      30 ..      33      57 ..      31      92 .. 0.73
   2 !   25.7   0.0   8.3e-09   8.8e-06     229     298 ..     131     197 ..      66     201 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.4e-07
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrdve 30
                 +iG+ gsGKS+LL+++ +l +   ++e
  CTQ28193.1 33 SIIGRSGSGKSTLLRCINGLEG---YQE 57
                59*****************933...333 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 8.3e-09
      AAA_21 229 gqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 + +  +++lS G+++  a++ al+  +   ++ll DE+ + L+P+l+ ++l++l++l+++g  +il+TH 
  CTQ28193.1 131 RLDYYPANLSGGQQQRVAIARALAMSP---KVLLCDEITSALDPELVGEVLKVLEQLAAEGMTLILVTHE 197
                 444456778999999989999999888...9**************************************5 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   1.1e-12   1.2e-09      26     209 ..      31     209 ..      18     217 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1.1e-12
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE.SSSSSSCEEEE.EEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk.lkiekeevsis.rrvkrkgeseykingkevtkke 122
                 + +i+G+ GSGKs ll  i  + G ++  +++   ++  i++++++a+  + ++ ++f+n +     +  e+v +  rrv +k +   +  +   +  e
  CTQ28193.1  31 VISIIGRSGSGKSTLLRCINGLEGYQEG-SIKLGGMT--ITNRDSQAREISRSIGMVFQNFNLFpHMTALENVMLApRRVLKKSQ--AECRELAQRMLE 124
                 779****************999998887.77776664..777899999999*********9988423333334443134433333..333333334444 PP

                 HHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-.SCEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxx RF
       SMC_N 123 vsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemleka.dklv 209
                    l  + + ++ +LSgG+++ va+a  +A+    p+ + l Dei +aLD + v +v ++l++   + + +i ++++ ++ +++ d++v
  CTQ28193.1 125 KVGLGDRLDYYPANLSGGQQQRVAIARALAMS---PK-VLLCDEITSALDPELVGEVLKVLEQLAAEgMTLILVTHEMNFAREVgDRVV 209
                 4445555667889*************998875...44.4577********************9887769999****9999887745554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   6.6e-08     7e-05      11      39 ..      18      46 ..      15      52 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 6.6e-08
      AAA_29 11 tfdghtieidlkgatlltGpsGsGKSTll 39
                 ++g +++id+ +++ ++G+sGsGKSTll
  CTQ28193.1 18 VLKGVDLDIDMGEVISIIGRSGSGKSTLL 46
                56788999**888***************8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.5   2.4e-06    0.0025       7     128 ..      31     194 ..      27     202 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.4e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee....................................erpevv..fvtlpsstsskdllrellralgle 67 
                 ++ ++G sG+GK+tllr +      ++   +                                    e++ ++  +v  +s+ + ++l++++l+++gl+
  CTQ28193.1  31 VISIIGRSGSGKSTLLRCINGLEGYQEGSIKlggmtitnrdsqareisrsigmvfqnfnlfphmtalENVMLAprRVLKKSQAECRELAQRMLEKVGLG 129
                 689**************9998865444444489999999999999999999999888888877765544444477777777778888888888888864 PP

      AAA_22  68 lka..erlsseellealeqalrarav.ielliiDEaqh.lr.s..eealeeLrsllnlsrkgvqliLv 128
                      ++++++   ++    +ra a+ +++l+ DE+   l+ +   e+l+ L +l   +  g++liLv
  CTQ28193.1 130 DRLdyYPANLSGGQQQRVAIARALAMsPKVLLCDEITSaLDpElvGEVLKVLEQL---AAEGMTLILV 194
                 444775555555555544455555556669*****99988432333333333333...4467777776 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0012       1.2     242     265 ..      26      50 ..      15      53 .. 0.86
   2 !    6.9   0.0    0.0022       2.4     322     353 ..     138     169 ..     130     240 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
                 E-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAle 265
                 i  G v+ I+G+   GKsTLL+ ++
  CTQ28193.1  26 IDMGeVISIIGRSGSGKSTLLRCIN 50 
                 6677799***************986 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0022
                 S--HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 322 dASGStsqAanimealeagakllLiDEDtsAt 353
                 + SG   q ++i++al +  k+lL DE tsA 
  CTQ28193.1 138 NLSGGQQQRVAIARALAMSPKVLLCDEITSAL 169
                 679999999******************99995 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1     6e-06    0.0063      19     168 ..      29     226 ..      16     236 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6e-06
                 CSEEEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEE............................................EEES.XXHHHHHHHXX CS
      NB-ARC  19 qslvvalvGmgGvGKttlakqilnksdevegrFdsvawv............................................vvsk.tdkseeileti 72 
                 +  v+++ G+ G+GK+tl++ i+      eg  ++ + +                                            v+ k + + +e+ +++
  CTQ28193.1  29 G-EVISIIGRSGSGKSTLLRCINGL----EGYQEGSIKLggmtitnrdsqareisrsigmvfqnfnlfphmtalenvmlaprrVLKKsQAECRELAQRM 122
                 4.59***************999765....5555566666666667888888888888888888888888888888888888865444134456788888 PP

                 HHHHHCCCTTSSSS-STTS....HHHHHHHHCCCTTEEEEEEEE-SHHHH.....HHHH....CHTTSEEEEEESBCCCCCCS-S-.EEEEEESS--HH CS
      NB-ARC  73 lkeLslseddleekeeves....lkrklvrlLltkrfllvlDDVweeedwdkigvvlpa....renrlrvllTTRdeevanavsat.sekievelLekd 162
                 l++++l  d l+  + + s        + r+L     +l+ D +    d + +g vl+       +++  +l T +++ a +v+++   +++ ++ e+ 
  CTQ28193.1 123 LEKVGLG-DRLDYYPANLSggqqQRVAIARALAMSPKVLLCDEITSALDPELVGEVLKVleqlAAEGMTLILVTHEMNFAREVGDRvVFMHQGRVWEQG 220
                 8888777.4555544444456556777888888888888888888777755555554431111345778888888888888888887777777777777 PP

                 HHHHHH CS
      NB-ARC 163 eawell 168
                 ++ +l+
  CTQ28193.1 221 DSKTLF 226
                 777777 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   7.1e-06    0.0075      20      40 ..      30      50 ..       4      55 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.1e-06
      AAA_23 20 gltlItGpNGaGKTTildAik 40
                 +  I+G  G+GK+T+l++i 
  CTQ28193.1 30 EVISIIGRSGSGKSTLLRCIN 50
                5788***************96 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-05     0.013      20     122 ..      31     194 ..      26     199 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
      AAA_30  20 vavltGpAGtGKttalkal..reaweaaggrviglAptgk..aAkvLaeelgieastiakllkrlk................................. 81 
                 v  + G+ G+GK+t+l+ +   e +++   ++ g++ t++  +A+++++++g+  ++ + + + ++                                 
  CTQ28193.1  31 VISIIGRSGSGKSTLLRCIngLEGYQEGSIKLGGMTITNRdsQAREISRSIGMVFQNFNLFPHMTAlenvmlaprrvlkksqaecrelaqrmlekvglg 129
                 66799**************33345555557777888887622677799999998888888888877888888888888888888888888888889999 PP

      AAA_30  82 ....................grarlepgtllivDEagmv.dtkqlaallkaaek...agakvilv 122
                                     +ra   + ++l+ DE+  + d + + ++lk +e+   +g+++ilv
  CTQ28193.1 130 drldyypanlsggqqqrvaiARALAMSPKVLLCDEITSAlDPELVGEVLKVLEQlaaEGMTLILV 194
                 99999999999999988887444444448999999766556666655555554422157777777 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   8.9e-06    0.0093      24      63 ..      29      74 ..      17     208 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.9e-06
      AAA_16 24 pelvllsGesGvGKsslvrellralekd......ggiflrgkcdql 63
                +e++ ++G sG+GKs+l+r++      +      gg +++ +  q 
  CTQ28193.1 29 GEVISIIGRSGSGKSTLLRCINGLEGYQegsiklGGMTITNRDSQA 74
                47899***************98533333555555444444444444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   2.3e-05     0.024     100     128 ..      30      58 ..      14      82 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.3e-05
                  SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktg 128
                  +++ ++G SG GKStL+  +++ +  + g
   CTQ28193.1  30 EVISIIGRSGSGKSTLLRCINGLEGYQEG 58 
                  78899************999886554444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.8e-05     0.029      17      44 ..      24      50 ..      19     122 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.8e-05
      AAA_15 17 veidlseeltvliGkNnsGKSsileald 44
                 +id+ e +  +iG+ +sGKS++l+ ++
  CTQ28193.1 24 LDIDMGE-VISIIGRSGSGKSTLLRCIN 50
                5788889.*****************995 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1     7e-05     0.073       2      21 ..      32      51 ..      31      88 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7e-05
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                + i+Gr+ +GKStL++ + g
  CTQ28193.1 32 ISIIGRSGSGKSTLLRCING 51
                78*************98865 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00034      0.36      17     111 ..      27     122 ..      18     127 .. 0.80
   2 ?    0.4   0.0      0.33   3.5e+02     120     165 ..     157     198 ..     147     210 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00034
      ATPase  17 pegrvvlitGepGtGKtifalqFlikgaekygepgvf...vtveepaedlrenakslGwdlekleeegklaiidasesaeesaeekdkedleelieel 111
                  +g+v+ i G +G+GK+++     i+g+e y+e  +     t+  + ++ re  +s+G+ +++++   +++ ++ ++ a ++  +k++++ +el++++
  CTQ28193.1  27 DMGEVISIIGRSGSGKSTLLR--CINGLEGYQEGSIKlggMTITNRDSQAREISRSIGMVFQNFNLFPHMTALENVMLAPRRVLKKSQAECRELAQRM 122
                 6799*************9976..689999998888853336888889999999999999999988888888777777777777777788888887776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.33
      ATPase 120 akrvviDsitglayeekeavaReilrqlvrvlkklgvTailvseks 165
                  k ++ D it+     +++++ e   +++++l+  g+T ilv+   
  CTQ28193.1 157 PKVLLCDEITSA---LDPELVGEV-LKVLEQLAAEGMTLILVTHEM 198
                 577778888887...777777665.566789999999999998754 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00091      0.96      30      50 ..      26      46 ..      16      49 .. 0.88
   2 ?    1.2   0.1      0.22   2.3e+02     163     188 ..     172     196 ..     110     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00091
      AAA_25 30 lpagelallaGapgtGKttla 50
                + +ge++ ++G++g+GK+tl+
  CTQ28193.1 26 IDMGEVISIIGRSGSGKSTLL 46
                789****************97 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.22
      AAA_25 163 sdvgalvealeriarrtgaavllvhH 188
                 + vg++++ le++ ++ g +++lv H
  CTQ28193.1 172 ELVGEVLKVLEQL-AAEGMTLILVTH 196
                 3468999999999.588999999999 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1    0.0003      0.32       2      20 ..      31      49 ..      30      52 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0003
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                ++ + G++GsGK+tLl+ +
  CTQ28193.1 31 VISIIGRSGSGKSTLLRCI 49
                6889************966 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.022        23       4      19 ..      34      49 ..      32      73 .. 0.89
   2 ?    5.2   0.0     0.019        20      64      91 ..     151     183 ..     116     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.022
                EE--SSSSHHHHHHHG CS
       AAA_5  4 LvGppGtgKselaerl 19
                ++G +G+gKs+l + +
  CTQ28193.1 34 IIGRSGSGKSTLLRCI 49
                79**********9865 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.019
                 -....G-SEEEEESGGG--.HHHHHHHHHHHHS CS
       AAA_5  64 r....egeilvlDEverae.sevlnsLlsllee 91 
                 r    ++++l+ DE++ a  +e ++++l++le+
  CTQ28193.1 151 RalamSPKVLLCDEITSALdPELVGEVLKVLEQ 183
                 2344699***********99********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 1749.25
//
Query:       CTQ28194.1  [L=218]
Description: Amino acid ABC superfamily ATP binding cassette transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-14   53.9   8.7    1.7e-14   53.9   8.7    1.3  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   8.7   9.7e-19   1.7e-14      13     183 ..      46     212 ..      39     214 .. 0.90

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 9.7e-19
  BPD_transp_1  13 nkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalpp 109
                   ++ +++l+r++i++++++P +  ++l ++ ++++++  ++++++ ++l+l++ ++ + i  + +r+lpk+++ea+r lG+s  q++++vv P+al+ 
    CTQ28194.1  46 GRQVKRLIRGYIELFQGTPLLMQLFLAFFGVALFGVDVSAWTAASVALTLYTSAFLLDIWFGSIRALPKGQWEASRCLGLSFGQTLYRVVAPQALRI 142
                   6789******************666666444666667789999****************************************************** PP

  BPD_transp_1 110 iitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   +i+  +  ++ +++g++l++++g    +  l+   ++  ++++  + +++ +++ +++l+  +    r+l+ ++
    CTQ28194.1 143 AIAPTVGFAVQVIKGTALASIIG----FVELTKAGTMLTNVTYQPFKVFALVALGYFILCYPLSRYSRYLENKF 212
                   ***********************....99999999999999988877888888889999999999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1699.28
//
Query:       CTQ28195.1  [L=221]
Description: Amino acid ABC transporter, permease protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-18   66.8  10.2    2.7e-18   66.4  10.2    1.1  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4  10.2   1.5e-22   2.7e-18       1     175 [.      35     208 ..      35     216 .. 0.91

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 1.5e-22
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasr 94 
                   g+ +Gil a     r + l+++  +++++++ +P++v ++++v+ + +l+   ++  ++++++++ +++y + i+ra++++ pk+++ea r+lG+sr
    CTQ28195.1  35 GLAIGILGAairSGRPGMLSRVWGGYVEIIRNTPFVVQLFFIVFGLPNLGLKMTAGEAALLAMVVNLGAYSTEIVRAGIQVTPKGQWEAGRVLGLSR 131
                   67888888888889999************************997666665555666678************************************** PP

  BPD_transp_1  95 wqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadil 175
                    q+f++vvlP al  i + l+ + ++++ g+++++ +        l++ a+l++  ++ s+ ++l+++ ++l+l+++++ l
    CTQ28195.1 132 TQTFVRVVLPPALQRIYPALVSQCIIVMLGSSVVSQVS----YEELTFAANLIQSRTFLSFEVYLVTTGIYLALSIAMRQL 208
                   **************************************....899999999999999999999999999999999998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1720.39
//
Query:       CTQ28196.1  [L=261]
Description: Cysteine transport protein (ABC superfamily, peri_bind) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-46  156.4   0.0    8.4e-46  156.2   0.0    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    7.6e-05   22.9   0.0     0.0029   17.8   0.0    2.2  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine
     0.0091   16.0   0.0      0.015   15.2   0.0    1.3  1  NMT1             NMT1/THI5 like


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   0.0   1.4e-49   8.4e-46       1     224 [.      35     252 ..      35     253 .. 0.98

  Alignments for each domain:
  == domain 1  score: 156.2 bits;  conditional E-value: 1.4e-49
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 +r++v +d+pPf+ + ++ +++G+d+d+a+ +ak++++k+++vpv+ ++++p l++ kvD++i+++  ++eRe+++dFs+ y    ++++ +k++    
  CTQ28196.1  35 IRIAVPQDFPPFGSVGTDLQPQGYDIDMARYLAKSMKLKLQLVPVTSANRVPYLQTDKVDLVISSLGKNAEREKVIDFSRAYAPFFLGVFGPKGA---- 129
                 79******************************************************************************************864.... PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETTTHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkgdseL 198
                  ++k+ a L+gk++gv++g + +  l++ +++ a+i+++++++  l a  +g+v++v++ + v+a + ++n+dk  v  +  l ++++ i+++k++++L
  CTQ28196.1 130 -ELKDAAALSGKSIGVTRGAVEDMVLTSVAPQAAQIKRYEDNNTTLSAYLSGQVQYVATGNLVVAAISRQNADKAPVP-SFMLKDSPCFIGLKKNEPAL 226
                 .699999****************999999999**********************************************.******************** PP

                 HHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 199 rkainkalaelkadgtlakisekWfg 224
                 +++++  +++ ++dgtl+ +sekW++
  CTQ28196.1 227 KAKVDTLIEQGIKDGTLNGLSEKWLK 252
                 ************************96 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.8e-07    0.0029      72     103 ..      86     117 ..      47     124 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.8e-07
                      HHHHTTS-SEE-SS-B--HHHHTTSEEESESE CS
  Lig_chan-Glu_bd  72 gellekkadlavapltitaeReevvdFtkpfm 103
                        l ++k+dl++++l  +aeRe+v+dF++++ 
       CTQ28196.1  86 PYLQTDKVDLVISSLGKNAEREKVIDFSRAYA 117
                      567789**********************9986 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.6e-06     0.015      21     145 ..      72     186 ..      68     217 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.6e-06
                 EEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--G CS
        NMT1  21 ldVeivepadpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqeplsglivlkdsgikspkDLkGkrigyvgspfekallkallakdggdp 119
                 l++++v+ +  ++ ++++ ++k+d+ +s+  +     a+  +v  + + +   + g++  k++++k+ + L Gk ig++ + +e+++l ++  +  ++ 
  CTQ28196.1  72 LKLQLVPVTS-ANRVPYLQTDKVDLVISSLGK----NAEREKVIDFSRAYAPFFLGVFGPKGAELKDAAALSGKSIGVTRGAVEDMVLTSVAPQ-AAQI 164
                 7888888766.99999*********9998665....55778899999999999***************************87887777766544.4556 PP

                 GG-EEEE-.TT-HHHHHHCTSSSEEE CS
        NMT1 120 sdvtlvnvggtslakalltgkvDaai 145
                 + ++  n+    l +a l+g+v+ + 
  CTQ28196.1 165 KRYEDNNT---TL-SAYLSGQVQYVA 186
                 77776433...33.377888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1946.25
//
Query:       CTQ28197.1  [L=64]
Description: exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 548.26
//
Query:       CTQ28198.1  [L=279]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-12   47.6   0.0    2.2e-12   46.7   0.0    1.4  1  HTH_6           Helix-turn-helix domain, rpiR family
      2e-09   37.4   0.0      3e-09   36.8   0.0    1.3  1  SIS             SIS domain
    3.2e-05   23.8   0.1     0.0015   18.5   0.0    3.3  3  HTH_Crp_2       Crp-like helix-turn-helix domain
    0.00059   19.6   0.0     0.0015   18.3   0.0    1.6  2  LacI            Bacterial regulatory proteins, lacI family
      0.007   16.2   0.1       0.04   13.8   0.0    2.4  2  MarR_2          MarR family
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.053   13.3   0.0    2.2  2  HTH_IclR        IclR helix-turn-helix domain
      0.019   14.9   0.0       0.14   12.1   0.0    2.4  3  MarR            MarR family
      0.024   14.3   0.3      0.073   12.7   0.0    2.0  2  Crp             Bacterial regulatory proteins, crp family
      0.034   14.2   0.1      0.084   13.0   0.1    1.6  1  HTH_3           Helix-turn-helix
      0.037   12.9   0.1      0.052   12.5   0.1    1.2  1  Phage_min_cap2  Phage minor capsid protein 2
      0.043   13.7   0.1       0.12   12.3   0.1    1.7  1  TP_methylase    Tetrapyrrole (Corrin/Porphyrin) Methylases
      0.047   14.3   0.0       0.11   13.1   0.0    1.6  1  HHH_5           Helix-hairpin-helix domain
      0.049   13.2   0.0       0.15   11.7   0.0    1.8  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.066   13.6   0.4       0.47   10.9   0.0    2.7  2  Secretin_N      Bacterial type II/III secretion system short 
       0.08   12.9   0.0       0.23   11.4   0.0    1.8  1  HTH_36          Helix-turn-helix domain
       0.15   12.5   0.1       0.53   10.8   0.0    1.9  1  HTH_26          Cro/C1-type HTH DNA-binding domain


Domain annotation for each model (and alignments):
>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0     2e-15   2.2e-12       2      71 ..       3      72 ..       2      77 .. 0.95

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 2e-15
                -HHHHHHHH-----HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH--HHH CS
       HTH_6  2 nllekiqskkekltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselklaLa 71
                +l e+++ ++ +l++ e+++a++i  + d +i+  +++lA+ ++vS+at+ r+ k LG+  +++++ +L 
  CTQ28198.1  3 QLDERLKGQYASLSPQEQRVADFIFDHFDDLISYNSAELAQLSGVSKATVSRLFKRLGYDKYKDMRDELR 72
                5779999**********************************************************98875 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   2.7e-12     3e-09       4     126 ..     126     245 ..     123     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 2.7e-12
                 TSSEEEEEESHHHHHHHHHHHHHH.HHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEE CS
         SIS   4 kakriyvlGaGtsyaiakelalkl.eeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadla 101
                  a+ri+v+G++  y++a+ l+ +l +  g+++v  ++  +l  + l  ++ ddlv++ +f+++ + +  ++++++++g+++++++  ++ +l   ++  
  CTQ28198.1 126 AARRIVVIGMRNAYPAALHLRQQLlQARGQVLVLPQPGQSLSEE-LVDLTADDLVVMMAFRRRPRIVRPLLQQLQRDGVPVLLMCEPQAHSLFPLSRWQ 223
                 699*********************56667777777778888888.******************************************999999999888 PP

                 EEEEEECHCSSSHCHHHHHHHHHHH CS
         SIS 102 lyinaepetlvastksltaqlaald 126
                 l+ + +  +   +++s+ +  ++++
  CTQ28198.1 224 LCAPLDSVS---AYDSYASVNSLIN 245
                 888887777...4444444444444 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.3e-06    0.0015       1      45 [.      20      59 ..      20      77 .. 0.88
   2 ?   -1.1   0.1       1.7   1.9e+03      36      65 ..     164     198 ..     163     201 .. 0.63
   3 ?    0.2   0.0      0.65   7.3e+02      35      65 ..     237     269 ..     236     271 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.3e-06
                HHHHHHHHHHHCTTTCEEEEEHHHHHHHHHTTSSHHHHHHHHHHH CS
   HTH_Crp_2  1 qRlArfLlrlaeraggeielpltqeelAsmlGltretvsrilseL 45
                qR+A f+ ++ ++    + ++ + +elA++ G++  tvsr++++L
  CTQ28198.1 20 QRVADFIFDHFDD----L-ISYNSAELAQLSGVSKATVSRLFKRL 59
                8999999887554....4.89**********************99 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHTTSEE...ETEE..EEES-HHHH CS
   HTH_Crp_2  36 etvsrilseLkreglis...rgrr..irildleaL 65 
                 +++s +l +L  + l+     +rr  i+ + l++L
  CTQ28198.1 164 QSLSEELVDLTADDLVVmmaFRRRprIVRPLLQQL 198
                 67888888999998888754233333655555555 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.65
                 HHHHHHHHHHHHHTTSEE.E..TEEEEES-HHHH CS
   HTH_Crp_2  35 retvsrilseLkreglis.r..grririldleaL 65 
                   +v+ +++ L ++ l++    gr  ri+d++ L
  CTQ28198.1 237 YASVNSLINLLANAFLHEtLdsGR-PRIHDIATL 269
                 679999999999999999733344.999999888 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.3e-06    0.0015       4      19 ..      40      55 ..      39      64 .. 0.90
   2 ?   -2.9   0.0       5.7   6.3e+03       2       8 ..     263     269 ..     262     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.3e-06
                HHHHHCTS-HHHHHHH CS
        LacI  4 DVArlAGVSkaTVSrv 19
                ++A+l+GVSkaTVSr 
  CTQ28198.1 40 ELAQLSGVSKATVSRL 55
                78*************6 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.7
                 HHHHHHH CS
        LacI   2 ikDVArl 8  
                 i+D+A+l
  CTQ28198.1 263 IHDIATL 269
                 89***86 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.6e-05      0.04       3      45 ..      15      59 ..      13      60 .. 0.85
   2 ?   -2.1   0.0       3.4   3.8e+03       2      18 ..     172     188 ..     162     200 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.6e-05
                --HHHHHHHHHHHCTTTSEE...EHHHHHHHHTSSHHHHHHHHHHH CS
      MarR_2  3 ltpaqarvLaaLgrrpgrdl...tvgelarrlglsksavsrilkrL 45
                l+p++ rv  ++ ++ + dl   + +ela+  g+sk++vsr+ krL
  CTQ28198.1 15 LSPQEQRVADFIFDHFD-DLisyNSAELAQLSGVSKATVSRLFKRL 59
                77888888888888887.4566699*****************9998 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.4
                 T--HHHHHHHHHHHCTT CS
      MarR_2   2 gltpaqarvLaaLgrrp 18 
                 +lt  ++ v++a +rrp
  CTQ28198.1 172 DLTADDLVVMMAFRRRP 188
                 44555555666666665 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.8e-05     0.053      22      42 ..      39      59 ..      31      64 .. 0.89
   2 ?   -2.0   0.0       2.9   3.3e+03      35      46 ..     191     202 ..     191     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.8e-05
                HHHHHHHTS-HHHHHHHHHHH CS
    HTH_IclR 22 selArrtglpkStvhRlLqtL 42
                +elA+ +g++k+tv+Rl + L
  CTQ28198.1 39 AELAQLSGVSKATVSRLFKRL 59
                7***************97665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.9
                 HHHHHHHHHHTT CS
    HTH_IclR  35 vhRlLqtLvelG 46 
                 v+ lLq L++ G
  CTQ28198.1 191 VRPLLQQLQRDG 202
                 677999999877 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.14      19      41 ..      37      59 ..      31      60 .. 0.89
   2 ?   -2.4   0.0       4.1   4.6e+03      23      41 ..      94     112 ..      88     117 .. 0.73
   3 ?   -1.6   0.0       2.4   2.7e+03      30      44 ..     265     279 .]     264     279 .] 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                EHHHHHHHHTS-HHHHHHHHHHH CS
        MarR 19 svseLakklgvskstvtrvldrL 41
                + +eLa  +gvsk+tv+r+ +rL
  CTQ28198.1 37 NSAELAQLSGVSKATVSRLFKRL 59
                678******************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.1
                 HHHHHTS-HHHHHHHHHHH CS
        MarR  23 LakklgvskstvtrvldrL 41 
                 La++ + + +++t ++ +L
  CTQ28198.1  94 LARHYKQEMANLTQWVNAL 112
                 6777777788899888887 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.4
                 -HHHHHHHHHHHHHT CS
        MarR  30 skstvtrvldrLekk 44 
                 +++t+  +ld+Le++
  CTQ28198.1 265 DIATLYQQLDELEQR 279
                 568888999***996 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.5e-05     0.073       7      28 ..      40      61 ..      38      63 .. 0.87
   2 ?   -2.6   0.1       4.1   4.6e+03      22      31 ..     194     203 ..     194     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.5e-05
                HHHHHHTS-HHHHHHHHHHHHH CS
         Crp  7 dIAdylGlTrETVSRlLtrLre 28
                ++A + G +  TVSRl++rL  
  CTQ28198.1 40 ELAQLSGVSKATVSRLFKRLGY 61
                89999999999*********75 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.1
                 HHHHHHHTTS CS
         Crp  22 lLtrLrekGL 31 
                 lL  L+++G+
  CTQ28198.1 194 LLQQLQRDGV 203
                 5788****97 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   7.5e-05     0.084      13      31 ..      39      57 ..      34      59 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.5e-05
                HHHHHHHTSSHHHHHHHHT CS
       HTH_3 13 eeLAeklGvsrstisriEn 31
                +eLA+++Gvs++t+sr+++
  CTQ28198.1 39 AELAQLSGVSKATVSRLFK 57
                79**************975 PP

>> Phage_min_cap2  Phage minor capsid protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.6e-05     0.052      62     135 ..      40     110 ..      33     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.6e-05
  Phage_min_cap2  62 liskltgksekelrkllkeagdkaiksddkelaiykeaglepkplekseelqqlveaylkqtegelkNltntta 135
                      +++l+g s+ ++ +l+k  g+ ++k+   el++ ++ g    pl+++ +  q    +++  ++e+ Nlt+ + 
      CTQ28198.1  40 ELAQLSGVSKATVSRLFKRLGYDKYKDMRDELRTLRQSG---MPLTDQRDAVQGNTLLARHYKQEMANLTQWVN 110
                     6899***********************************...78888877777777788888888888886554 PP

>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00011      0.12     126     194 ..     141     208 ..     133     210 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
  TP_methylase 126 arlgiplteggevlsvl.lpglakeeereleallangdtlvllkaprklaelaelLkealyddttpvavv 194
                   a+l++  +  +   +vl lp+++ +  +el +l a  d lv+++a r+ +++++ L+++l+ d  pv ++
    CTQ28198.1 141 AALHLRQQLLQARGQVLvLPQPGQSLSEELVDLTA--DDLVVMMAFRRRPRIVRPLLQQLQRDGVPVLLM 208
                   44444444444444444437777889999999999..*********************999999999875 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0    0.0001      0.11      26      55 ..      30      59 ..      23      61 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0001
                HHHHHHS-HHHHHTSTTS-HHHHHHHHHHH CS
       HHH_5 26 vedlaaadveeLakipGiGkktAeriilel 55
                ++dl++ + +eLa++ G++k t+ r+   l
  CTQ28198.1 30 FDDLISYNSAELAQLSGVSKATVSRLFKRL 59
                89***********************97655 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013      0.15      21      41 ..      39      59 ..      36      60 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
      HTH_24 21 reLAerlglSpstvnrrlkrL 41
                +eLA+ +g+S++tv+r  krL
  CTQ28198.1 39 AELAQLSGVSKATVSRLFKRL 59
                8******************98 PP

>> Secretin_N  Bacterial type II/III secretion system short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00042      0.47      53      80 ..      89     116 ..      58     118 .. 0.89
   2 ?   -1.1   0.1       2.3   2.6e+03       7      22 ..     236     251 ..     234     267 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00042
                 TTTEEEEEECHHHHHHHHHHHHHHCTSS CS
  Secretin_N  53 rtNsllvrgspervarirqlikqLDvpr 80 
                 + N+ll r  ++++a++ q++++LD ++
  CTQ28198.1  89 QGNTLLARHYKQEMANLTQWVNALDARQ 116
                 67***********************996 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.3
                 SSS-HHHHHHHHHHHC CS
  Secretin_N   7 kyasaadlasiLrell 22 
                  yas++ l ++L+ ++
  CTQ28198.1 236 SYASVNSLINLLANAF 251
                 5999999999998887 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00021      0.23      29      49 ..      39      59 ..      14      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
      HTH_36 29 etlakrlglsknTvsraikeL 49
                + la+++g+sk Tvsr  k L
  CTQ28198.1 39 AELAQLSGVSKATVSRLFKRL 59
                579**************9998 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00047      0.53      12      32 ..      37      57 ..      34      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00047
      HTH_26 12 tkseLargtgisaatlsrlvk 32
                +++eLa+ +g+s+at+srl+k
  CTQ28198.1 37 NSAELAQLSGVSKATVSRLFK 57
                789****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2269.52
//
Query:       CTQ28199.1  [L=528]
Description: putative gamma-glutamyltransferase YwrD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-127  426.4   0.0   1.8e-127  426.3   0.0    1.0  1  G_glu_transpept  Gamma-glutamyltranspeptidase


Domain annotation for each model (and alignments):
>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.3   0.0  9.9e-132  1.8e-127       2     512 .]      25     523 ..      24     523 .. 0.95

  Alignments for each domain:
  == domain 1  score: 426.3 bits;  conditional E-value: 9.9e-132
                      HHHHTT--HHHHHHHHHHHHHHHSTTT-STTSEEEEEEEETTSCEEEEEEE--BB-TT--TTTTTSCBCCHHHHSSGG.G-BB--HHHHHHHHH CS
  G_glu_transpept   2 evLrkGGnAvDAavAaalclgvvepqssGiGGGgfllvydaktkkvealdaretAPaaatkdmfdkegdsklsktgal.avgVPGevagleeah 94 
                       +Lr+GG+A++A+vAaa++++vv+p+++G+GG+gf+l+   ++  + a+da++ A++ at + +   g+++++++g++ a +V G+v+g++ea+
       CTQ28199.1  25 AILREGGSAIEAMVAAAAAIAVVYPHMNGLGGDGFWLIVPPEGDPI-AIDASGAAGSLATLEAY--AGQRHIPHRGPQaALTVAGTVSGWDEAL 115
                      69******************************************99.9****************..************899***********99 PP

                      H....HH-.SS-HHHHHHHHHHHHHH-EE--HHHHHHHHHCHHHHHTSHHHHHHHEETTSE--TTSEE--HHHHHHHHHHHHHTTHHHHSSHHH CS
  G_glu_transpept  95 k....kyG.klpwadllepaiklareGfpvsealaralaeaeerlkkdpelaklFlpegevlkagellkqpalAktLerlaeeGaeaFYkGelA 183
                      +      G  lp+a+ll+ ai +a++G+pv+  +a a+a++ e+l+++p++++++l  ge++++g++++qpalA tL+ la++G ++FY+G lA
       CTQ28199.1 116 RisrdLTGrALPVARLLADAIGYAEDGIPVTASQAHATASKLEELRHQPGFSETWLVAGEAPRPGSRFRQPALAGTLRMLASDGLDSFYRGPLA 209
                      6332234689************************************************************************************ PP

                      HHHHHHHHHTT-S--HHHHHH---EEES-EEEEETTCEEEEE-TTCSHHHHHHHHHHHHCTTTGGGCTTTCHHHHHHHHHHHHHHHHHHHHH-S CS
  G_glu_transpept 184 eklvaelqkagGiltaeDLanykvevreplsadyrggytvyepppssggivllqiLnilegfdlkslssnsaetlhllvEamklayadRsrylg 277
                      e+l++ ++  g  +t+ DL++++++   pl++++ ++ t+++  p+++g+v l+iL i +++++ ++  ++a+t+h++vEa+k a+a R++ ++
       CTQ28199.1 210 ERLAQGMATLGMPVTLGDLQAHRARRPGPLTLQH-QQGTLWNLAPPTQGLVSLAILGITDRLKMADA--DDAQTVHRIVEATKRAFALRDAHIT 300
                      **********************************.899*************************6544..559********************** PP

                      STTTSSSGHCHHHHHT-HHHHHHHHTT.BTTB..SGGGCSCGGCSCG.TTEEEEEEEEETTS-EEEEEEEESSTTTTSEBETTTTEBE--GGGG CS
  G_glu_transpept 278 DpdfvknptelveellskeyakeraklIkdkaatpsseyykaaeaaeesggTthlsvvDregnaVSltstinllFGsgvvvpgtGilLnnemdd 371
                      Dp++ ++    v++ll +e ++ +a++I+d +a+p+          +  g+T+++ vvD++g aVS++++i+++FGsgvv p+tGi+++n++  
       CTQ28199.1 301 DPRHLDV---DVQQLLTPEALQPLADSIDDASASPW-------GGGKGPGDTVWMGVVDNSGLAVSFIQSIYHEFGSGVVLPDTGIVWQNRGAA 384
                      *****85...5************************5.......456679********************************************* PP

                      SBSTS..TTSCSTTSTTB--TT----B----EEEEETTEEEEEEEEESGGGHHHHHHHHHHHHHTT-S-HHHHHHS--EEE.....SSSSTEEE CS
  G_glu_transpept 372 fstgvenafgldpspanaiePgkRplssmaPtivlkdgkpvlvlGaaGGsriisavlqvlvnvldlgldlqeavdaprihh.....qllpdkve 460
                      fs        ldp++  a++Pgk+p++++ P     ++  v+v+G++GG+ ++++++ ++++++ +g +lqe++++pr+       q  +d ++
       CTQ28199.1 385 FS--------LDPQHLLALAPGKQPFHTLNPAAARLNDGRVMVYGSMGGDGQPQTQAALFTRYILQGVPLQESISRPRWLLgrtwgQ-SSDSLK 469
                      **........**********************************************************************9976743.667*** PP

                      ESTTS.HHHHHHHHHTTSEEEESSSTCCCEEEEEEEE..TTTEEEEEE-TTTTT CS
  G_glu_transpept 461 vEegfseevveeLearGhkvkevedsssvvaavavak..ekgvleaasDprkdg 512
                      +E +f  + ++ L+++Gh+v++ +d+s+++ ++ ++    +g le+a+Dpr++g
       CTQ28199.1 470 LEGRFAPACIARLRELGHDVEVLADFSEAMGHAGAIVrhPNGLLEGATDPRSNG 523
                      *************************999887776655569***********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.35
# Mc/sec: 4472.35
//
Query:       CTQ28200.1  [L=61]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-17   64.0   0.5    1.4e-17   63.8   0.5    1.0  1  DUF4089   Protein of unknown function (DUF4089)


Domain annotation for each model (and alignments):
>> DUF4089  Protein of unknown function (DUF4089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.5     8e-22   1.4e-17       1      50 []      10      59 ..      10      59 .. 0.99

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 8e-22
     DUF4089  1 YvdqtaallgLeldpeyrpgVvanferiaaiAqlvnefPLpeeiEpAPvF 50
                Y++q+ +ll++eld+ +r+++  +f+riaa+Aq+++++PL ++ E+A+v+
  CTQ28200.1 10 YLTQMTHLLDMELDAPRREELERQFARIAAMAQPLMDYPLGPREEIAGVY 59
                9************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 517.04
//
Query:       CTQ28201.1  [L=465]
Description: Biuret hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.4e-101  340.0   0.0   3.4e-101  339.4   0.0    1.2  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.4   0.0  1.9e-105  3.4e-101       1     451 []      24     444 ..      24     444 .. 0.95

  Alignments for each domain:
  == domain 1  score: 339.4 bits;  conditional E-value: 1.9e-105
                 HHHHHHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS.--HHHHHHHHTT-EEEEE CS
     Amidase   1 elveaflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaek.DatvverLkkaGavilgk 98 
                 e+ ++ l+ i++vn+++na+ +v+ +  la+A+++d+ r+++++ +pL+G+P +vK  +dv+g+ t aG + l ++p+   D+  v++L++aGa++ g 
  CTQ28201.1  24 EIARQTLDDIARVNPQINAWTEVTAQRMLAEADSIDALRREKRPLPPLAGIPYAVKNLFDVAGHTTLAGAELLSDRPPAAsDSWAVRQLHSAGALLSGM 122
                 5678999*********************************************************************98766****************** PP

                 E--SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSH CS
     Amidase  99 TnmdefamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsv 197
                  nmd  a+g +tens +g+trNP d+sr++GGSSGGsAAavAaglv +++G+Dt GSiR+PAs+cg++GlKPt+gr+Sr+g  ++ +sld++Gp+ar+v
  CTQ28201.1 123 LNMDAYAYGFTTENSHYGATRNPHDLSRIAGGSSGGSAAAVAAGLVHFSLGSDTNGSIRVPASLCGIFGLKPTFGRLSRSGSHPFVASLDHIGPFARRV 221
                 *************************************************************************************************** PP

                 HHHHHHHHHHBS--TT-TTS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHHHHHHHHHHHH CS
     Amidase 198 edlalllrvilgedpkdstssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleealslyylilvaea 296
                  dla++++++ g+dp+d+ +++  ++se + + l+  l+glr + +  ++ +  d++ ++av+++++aL +      e+++ + + a s+ ++i+++e+
  CTQ28201.1 222 ADLAAVYDALQGRDPADDFQAD--KASERTGNLLERGLEGLRCARLGGYFTTWCDDDARAAVDRVAHALGADS----ELQFADAALARSAAFIISASEG 314
                 **********************..899***********************999***************98875....5555666666677789999999 PP

                 HHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCCCCHH CS
     Amidase 297 ssnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlgekdkt 395
                 ++                     +  ++++e ++++ + r+  g++  sa      yl+aq+ rr  r++++ +f + Dvl++P++p+ a+++g+++ +
  CTQ28201.1 315 GNQ------------------YLTDLRHSPERFEPHSRERLLAGAMIPSAW-----YLQAQRFRRHARQAIKSLFSQADVLIAPATPCSATPIGAEEIV 390
                 944..................467789999***************999976.....9****************************************99 PP

                 H.CSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHHH CS
     Amidase 396 i.dsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetlL 451
                 i  +++ +++++ ++  + p ++ glp ++vp+ + ++g P+G+q+i+ +f+e+++L
  CTQ28201.1 391 InGQPLPVRASMGML--TQPISFLGLPVVTVPLRT-ASGKPIGLQLIAAPFNEQACL 444
                 9999***********..*****************7.57****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3473.03
//
Query:       CTQ28202.1  [L=128]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-60  201.9   0.2    2.5e-60  201.7   0.2    1.0  1  DUF3225   Protein of unknown function (DUF3225)
      1e-06   29.1   0.6    1.3e-06   28.7   0.6    1.1  1  DUF4440   Domain of unknown function (DUF4440)
    8.8e-05   22.8   0.1    0.00011   22.4   0.1    1.1  1  SnoaL_3   SnoaL-like domain
     0.0057   17.3   0.7     0.0074   16.9   0.7    1.1  1  SnoaL_2   SnoaL-like domain
  ------ inclusion threshold ------
      0.062   13.4   0.5       0.12   12.6   0.5    1.4  1  SnoaL_4   SnoaL-like domain


Domain annotation for each model (and alignments):
>> DUF3225  Protein of unknown function (DUF3225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.7   0.2     7e-64   2.5e-60       2     124 ..       6     128 .]       5     128 .] 0.99

  Alignments for each domain:
  == domain 1  score: 201.7 bits;  conditional E-value: 7e-64
                 GBS-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHB--STT-EEEETTEEEESHHHHHHHHHHS--TT---EEEEEEEEEETTTEEEEEEEEE-SS-SS-E CS
     DUF3225   2 einkpevlaevtaafarYeaaLvsndvaaldalfwddpktvRyGvgenLyGieairafRaarpsvglaRellrtvvttfGeDvavasvefrregseriG 100
                 ++++p++laevtaaf++Ye+aLvsn+++aldalfw+dp+tvR+G+genLyGieairafRaarp++glaR+l++t +ttfG+D+av+s+ef+regs+r+G
  CTQ28202.1   6 NVDRPAILAEVTAAFYQYEEALVSNNIEALDALFWHDPRTVRLGAGENLYGIEAIRAFRAARPAAGLARDLRHTIITTFGADMAVCSTEFTREGSARLG 104
                 69************************************************************************************************* PP

                 EEEEEEEEETTEEEEEEEEEEE-. CS
     DUF3225 101 RqsqtWvrlpegWrivaahvslld 124
                 Rq+qtWvr+p gWrivaa+vsl+d
  CTQ28202.1 105 RQQQTWVRFPYGWRIVAAQVSLMD 128
                 **********************95 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.6   3.7e-10   1.3e-06       2     107 .]      17     119 ..      16     119 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 3.7e-10
                 HHHHHHHHHHHHCT-HHHHHHCEEEEEEEE..-TTS-EEEHHHHHHHHHCCHCEEEEEEEEEEEEEEE.TTEEEEEEEEEEEECCTTEEEEEEEEEEEE CS
     DUF4440   2 aaleealeeafvagdaealaallapdavlv..gpsgtvldkeellealeagfaagrslelteeevrvl.gdlAvvtgrytfegrgdgepvegrgrftsv 97 
                 +a++ ++eea+v+ ++eal+al+  d + v  g+++ ++++e++ +  +a +aag   +l+ + + +   d+Av + +  f+++g     ++ gr   +
  CTQ28202.1  17 TAAFYQYEEALVSNNIEALDALFWHDPRTVrlGAGENLYGIEAIRAFRAARPAAGLARDLRHTIITTFgADMAVCSTE--FTREGS----ARLGRQQQT 109
                 688899*****************9999888779999999**********************99999995667777777..555444....489****** PP

                 EEEETTEEEE CS
     DUF4440  98 wrkegggWri 107
                 w++ + gWri
  CTQ28202.1 110 WVRFPYGWRI 119
                 *********8 PP

>> SnoaL_3  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   3.1e-08   0.00011       1     119 [.      16     127 ..      16     128 .] 0.86

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 3.1e-08
     SnoaL_3   1 vealldafyeaaaegdfdalfalwaddivfigtgadelltgreevrrslkqifakgegisfeltdvrvtesg.dvawvtelldvtaaedgtegegql.r 97 
                 v a++ ++ ea+ + +++al al+  d  ++  ga+e+l+g e++r++ +     + g+   l+++ +t  g d+a+  +++       ++eg+++l r
  CTQ28202.1  16 VTAAFYQYEEALVSNNIEALDALFWHDPRTVRLGAGENLYGIEAIRAFRAARP--AAGLARDLRHTIITTFGaDMAVCSTEF-------TREGSARLgR 105
                 678999************************************99999988744..479999999999998765888888877.......4556666668 PP

     SnoaL_3  98 lTgvlrrtdggWkivhhhlSvp 119
                     ++r   gW+iv  + S +
  CTQ28202.1 106 QQQTWVRFPYGWRIVAAQVSLM 127
                 88899999******99999965 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.7   2.1e-06    0.0074       4      76 ..      23     100 ..      18     123 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.1e-06
                 HHHHHHTTCHHHHHHTEEEEEEEEET.TSE.EESHHHHHHHHHHHHH..HEEEEEEEEEEEEEETTEEEE.EEEEEEE CS
     SnoaL_2   4 flaalnagdldalaalfapdvvwedp.gge.lrGreairaffralfa..afpdlrfeihdvvadgdrvav.ewtvtgt 76 
                 + +al + +++al+alf  d +     +ge l G+eairaf +a  a     dlr++i   +  +  v+  e+t +g 
  CTQ28202.1  23 YEEALVSNNIEALDALFWHDPRTVRLgAGEnLYGIEAIRAFRAARPAagLARDLRHTIITTFGADMAVCStEFTREGS 100
                 557999**********977766554446667*********75555557799999*99999977766666546777764 PP

>> SnoaL_4  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5   3.2e-05      0.12       8     106 ..      15     111 ..      11     122 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.2e-05
                 HHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTS..--EESHHHHHHHHHSHHHHHH-EEEEE---EEEEETTEEEEEEEEEEEEEETTEEEEEE.. CS
     SnoaL_4   8 aIrdlvarygyylDtkdweeladlFtedavvdytgvgegvlegrdairaalrealdgfaltqHllsnplieldgdtAtgrayllatlvrdgdggrqvla 106
                 ++   +++y  +l  ++ e+l++lF+ d +    g    +l g++aira+ +++ ++  l + l ++ + ++  d A +++ ++    +  ++ +q + 
  CTQ28202.1  15 EVTAAFYQYEEALVSNNIEALDALFWHDPRTVRLGA-GENLYGIEAIRAFRAAR-PAAGLARDLRHTIITTFGADMAVCSTEFTREGSARLGRQQQTWV 111
                 777788888888889999**********88777765.57788*******76666.67778888888888888888888888887775444344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1026.78
//
Query:       CTQ28203.1  [L=102]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-07   29.6   0.0    6.7e-07   29.6   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.4e-05   25.4   0.0    2.4e-05   24.7   0.0    1.4  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
    3.9e-05   23.6   0.1    5.3e-05   23.2   0.1    1.4  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.096   12.8   0.0       0.12   12.5   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
       0.13   12.3   0.4        3.3    7.7   0.1    2.6  3  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.9e-10   6.7e-07      34      91 ..      42     101 ..       9     102 .] 0.82

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.9e-10
                     EEEEEEETTEEEEEEEEEEEET..TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHH CS
  Acetyltransf_1  34 gllvaeedgeliGfisllkipd..ekggvayieslaVspeyrgkGlGsaLlealeerare 91 
                     + lvae ++ + G i ++ i +  e++  a i  l++ ++ rg+G+G++Ll+a+e+ ar+
      CTQ28203.1  42 SALVAETENAVCGVIVINFILPvhENRLWALISALVIEESSRGSGIGQQLLQAAERLARD 101
                     5566999999*******99999988888999999***********************997 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.4   1.2e+04      67      75 ..      16      24 ..       8      25 .. 0.73
   2 !   24.7   0.0   6.7e-09   2.4e-05       6      49 ..      44      95 ..      37     102 .] 0.80

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.4
                    HHHHHTTEE CS
  Acetyltransf_7 67 kfYeklGFe 75
                     ++ +lG++
      CTQ28203.1 16 TLFLQLGYQ 24
                    477888886 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 6.7e-09
                    EEEEETTEEEEEEEEEEES........TCTEE...EEE-GGGTTSSHHHHHHHHT CS
  Acetyltransf_7  6 fVaeddgkivGfialslld........aeitr...laVdpeyrgkGiGraLleaa 49
                    +Vae ++ ++G i++  +         a       l++ ++ rg GiG++Ll+aa
      CTQ28203.1 44 LVAETENAVCGVIVINFILpvhenrlwA---LisaLVIEESSRGSGIGQQLLQAA 95
                    79*********99988888976655444...05569****************973 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   1.5e-08   5.3e-05      22      82 ..      30     101 ..       7     102 .] 0.80

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.5e-08
  Acetyltransf_10  22 lrerie..egealllvaeeggkivGvi......elrdgs.....hisllfVdpeyrgqGigkaLleaveeeaek 82 
                      l++ri+  +  +  lvae ++ ++Gvi       +   +      is l+++++ rg Gig++Ll+a+e+ a++
       CTQ28203.1  30 LAQRITapQRMMSALVAETENAVCGVIvinfilPVH--EnrlwaLISALVIEESSRGSGIGQQLLQAAERLARD 101
                      5667743577788999***********666543332..1457999************************99864 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.3e-05      0.12      30      55 ..      76     101 ..      46     102 .] 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.3e-05
  Acetyltransf_CG  30 TeVpeelrGkGiAkkLvkaalddare 55 
                       +++e+ rG Gi+++L +aa   ar+
       CTQ28203.1  76 LVIEESSRGSGIGQQLLQAAERLARD 101
                      6899***************9888886 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.34   1.2e+03      69      80 ..      15      26 ..       5      29 .. 0.70
   2 ?    2.0   0.0     0.056     2e+02      46      71 ..      30      55 ..      22      71 .. 0.69
   3 ?    7.7   0.1   0.00092       3.3      23      46 ..      72      95 ..      64     102 .] 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.34
                HHHHHHHT-EEE CS
        FR47 69 irlyeklGfeki 80
                + l+ +lG++  
  CTQ28203.1 15 QTLFLQLGYQTE 26
                369999999975 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.056
                HHHHHHHS-S-EEEEEETT-HHHHHH CS
        FR47 46 lakeiaergktvllvvvasNtpsirl 71
                la++i + +  ++++v++++++ + +
  CTQ28203.1 30 LAQRITAPQRMMSALVAETENAVCGV 55
                67777777777777777777766655 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00092
                SEEEEEE-GGG-SSSHHHHHHHHH CS
        FR47 23 elgalqvlpehrrrGlgsrlvkal 46
                 ++al ++++ r+ G g++l +a 
  CTQ28203.1 72 LISALVIEESSRGSGIGQQLLQAA 95
                699*****************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 800.79
//
Query:       CTQ28204.1  [L=372]
Description: aspartate-semialdehyde dehydrogenase, NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-42  143.6   0.0      9e-42  143.2   0.0    1.2  1  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
    1.1e-23   84.0   0.0    4.6e-23   82.0   0.0    2.0  2  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma


Domain annotation for each model (and alignments):
>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.0     1e-45     9e-42       1     184 []     144     355 ..     144     355 .. 0.94

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 1e-45
                      HHHHHHCTT.EEEEEEEEEEEGGGCHHHHHHHHHHH.........................HHHHHHSTTS.CTTTSSHHTTSEESTCSTBTTT CS
  Semialdhyde_dhC   1 LkPLldalgelervivatyqavSGaGkkgvreLlkq.........................vaelqrsdeakpgvfgvpiagNlipyidkeedk 69 
                      L++L++a + +e+++v+tyq++SGaG+k+vreL+ q                         v+el +s+ +++++fgvp++g++ip+id+++ +
       CTQ28204.1 144 LAGLIKA-DLIEWLSVMTYQSASGAGAKQVRELIAQsayisqhlsadeltssgsvlplvnkVSELINSAGMPVENFGVPLMGSIIPWIDSDLGD 236
                      899***9.99************************************************************************************ PP

                      TCHCBHHHHHHHHHHHHHCTESC...SEEEEEEEESBSSEEEEEEEEEESSSHHHHHHHHHHHHCSTTEEEEESS...HCHHSSHHHHTTCSSS CS
  Semialdhyde_dhC  70 gepetreelkavaetkkilefte...kvsatcvrVPvlrGhseavtiklklkdveveeveellaaapevkvvvne...eedrPtpaavaggtns 157
                      g   +ree+k+ aet+kil+  +   +v+++c rV+v+r+hs+a+t+klk++  e+e +e    ++p+v  v n+   +   +tpaa +g +++
       CTQ28204.1 237 G--NSREEWKGEAETNKILGLAPgtiPVNGLCIRVGVIRCHSAAITLKLKREVSEAEFAELVTHSHPWVNYVRNNkqeSVSKLTPAAISG-SLQ 327
                      *..******************99887788********************97777777777777777***9998887888899*******9.9** PP

                      EEEEEEEEETTCTT.EEEEEEEEETTTT CS
  Semialdhyde_dhC 158 vsVGRirkdemgde.glklvvvgDNllk 184
                      v +GR +k + +++    + +vgD+ll+
       CTQ28204.1 328 VGIGRYKKMSLNNDpVYSVLTVGDQLLW 355
                      ********998888678999******98 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   5.1e-27   4.6e-23       1     120 [.       3     121 ..       3     122 .. 0.85
   2 ?   -1.2   0.0       0.3   2.7e+03       7      46 ..     164     203 ..     164     218 .. 0.68

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 5.1e-27
                     EEEEETTTSHHHHHHHHHHHC..TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE.GGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTS. CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLee..hpevelvvllsssrsaGkklaeavkaleegkdlkved.vdeeelkevdivflalpagvskelapklaeagv. 91 
                     +v+ivG++G+vG++ll+++ e  +++   ++++s+s+ aG +    ++     k  +++d  +  +l+e+di++++++++++k+++p+l+++g+ 
      CTQ28204.1   3 QVGIVGWRGMVGSVLLQRMIEenDFDDITAHFFSTSS-AGAPGPVING-----KSDRLKDaNSLSALAEMDIIITCQGGDYTKAIYPALINHGWq 91 
                     69*************9888773455555566666666.***9999966.....44444554677799**************************** PP

                     .EEEESSSTTTTSTTSEBE-HHHHGGGGGG CS
  Semialdhyde_dh  92 .kviDlssdfRlkddavyvlpevnreaikk 120
                      ++iD++s++R+++ a+++l++vnre+i+ 
      CTQ28204.1  92 gYWIDAASALRMDERACIILDPVNRENIDR 121
                     ***************************986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.3
                     TTSHHHHHHHHHHHCTSSEEEEEEEESTT.TTTSBHHHHSG CS
  Semialdhyde_dh   7 atGyvGqellrlLeehpevelvvllsssr.saGkklaeavk 46 
                     a+G+  +++ +l++++ +++ +  ++ +  s G+ l  ++k
      CTQ28204.1 164 ASGAGAKQVRELIAQSAYISQHL-SADELtSSGSVLPLVNK 203
                     78999999999999988877655.44444477776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2898.54
//
Query:       CTQ28205.1  [L=185]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-21   76.2   0.0    2.1e-21   75.6   0.0    1.3  1  HxlR      HxlR-like helix-turn-helix
     0.0029   17.5   0.0     0.0055   16.6   0.0    1.4  1  PadR      Transcriptional regulator PadR-like family
  ------ inclusion threshold ------
       0.06   13.3   0.0       0.11   12.5   0.0    1.3  1  MarR      MarR family


Domain annotation for each model (and alignments):
>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   3.5e-25   2.1e-21       2      88 ..      20     105 ..      19     108 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 3.5e-25
                 HHSTTHHHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHHHHHHH CS
        HxlR   2 iggkWkllilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkkwgeeyle 88 
                 ig+ W+++il+  + g  Rf e+++   +++ ++L++rL+eL  dgl+e++ y+++Pp+ eY+lt++Gr+ + vl +l++wg+++  
  CTQ28205.1  20 IGDSWSIMILRDAFAGFTRFDEFQKSS-NVAPNILSRRLKELVDDGLLEKVCYSSTPPRYEYHLTPRGRDFRMVLLALAEWGNRHFA 105
                 899********************9987.******************************************************99875 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   9.2e-07    0.0055      37      71 ..      56      88 ..      40      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.2e-07
                HHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCH CS
        PadR 37 aLkrLekeglveseweesgegpprkyYrlTdaGrr 71
                 Lk+L ++gl+e+      ++ppr  Y+lT++Gr+
  CTQ28205.1 56 RLKELVDDGLLEKVCYS--STPPRYEYHLTPRGRD 88
                69***********9987..59************97 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.8e-05      0.11      20      49 ..      39      68 ..      34      69 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.8e-05
                HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        MarR 20 vseLakklgvskstvtrvldrLekkGlieR 49
                  e +k ++v +  ++r l++L+++Gl+e+
  CTQ28205.1 39 FDEFQKSSNVAPNILSRRLKELVDDGLLEK 68
                56899**********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1393.87
//
Query:       CTQ28206.1  [L=347]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-21   76.2   5.8    9.1e-19   67.5   5.8    2.3  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    5.3e-18   65.7   1.6    7.2e-14   52.4   0.0    2.8  3  HlyD_3           HlyD family secretion protein
    1.1e-13   50.7   3.3    1.1e-13   50.7   3.3    3.4  3  Biotin_lipoyl_2  Biotin-lipoyl like
    5.1e-07   29.5   0.1    7.6e-07   28.9   0.1    1.2  1  HlyD             HlyD membrane-fusion protein of T1SS
    0.00047   19.9   0.0      0.019   14.8   0.1    2.5  2  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
      0.098   11.5   0.1       0.15   10.9   0.1    1.4  1  YqfD             Putative stage IV sporulation protein YqfD
        3.5    8.6   7.6         40    5.2   0.1    2.6  2  ComP_DUS         Type IV minor pilin ComP, DNA uptake sequenc
        9.8    6.5  18.6      0.037   14.4   4.0    2.3  2  Mobilization_B   Mobilization protein B


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   5.8     4e-22   9.1e-19      19     187 ..      48     291 ..      45     295 .. 0.80

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 4e-22
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................................................. CS
    HlyD_D23  19 larvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalk................................................. 68 
                 ++ +s++v+G++++l+v+    +VkkG+ L++++  +  aa ++     +                                                 
  CTQ28206.1  48 ISAISSKVSGYIQQLAVQ-DNMAVKKGDLLIRIDDRDYRAALAKAAGEVAaqqaaladiqatrqlqqatiagsaasllaataateklandnrrynalaa 145
                 6889**************.999***********877755554443333323445899999999999999999999999999999999999988888888 PP

                 ...................XXXXXXXX........XXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  69 ...................akkklkkke.......lleaarerLrllgvseeqi........aelektgkvqktvtvkapisGvVteknvreGqyvqpg 133
                                                        a+++L +l+  ++qi        a+le  +   ++++++ap++Gv+ ++++  G++v+ g
  CTQ28206.1 146 ssaisaqirdnasadyrraH-------AeqekakaDKTVAERQLAVLDARQQQIlaalaqaqANLEMARLNLSYTDIRAPFDGVIGNRRAWSGSFVSSG 237
                 88888888888777776552.......0333344566677777888888877773222111134444555567889*********************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 134 dtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiypt 187
                 ++l+++     +W++a+  e+qla +++gq++++  + lp++tf+G+v+ ++p 
  CTQ28206.1 238 TQLLSLVPAHGLWIDANFKENQLAHMRAGQPATIVADVLPNHTFKGHVASLAPA 291
                 *************************************************99986 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.6   0.00019      0.43       2      69 ..      51     126 ..      50     169 .. 0.71
   2 ?   -2.0   0.0       2.7     6e+03      34      57 ..     169     191 ..     157     206 .. 0.66
   3 !   52.4   0.0   3.2e-17   7.2e-14       2     106 .]     215     334 ..     214     334 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiip......pdtllveakvpaadlgsik..kkgqkvtlkldqgsdytl 69 
                 + + v+G +++l v+ +  v +gd l +i +       ++++ e++  +a+l+ i+   + q++t+  +  s  + 
  CTQ28206.1  51 ISSKVSGYIQQLAVQDNMAVKKGDLLIRIDDrdyraaLAKAAGEVAAQQAALADIQatRQLQQATIAGSAASLLAA 126
                 6789**************************9776665566666666666666666666666666665554333333 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.7
      HlyD_3  34 dtllveakvpaadlgsikkkgqkv 57 
                 ++++++ +v++++l+ ++ + q+ 
  CTQ28206.1 169 EKAKADKTVAERQLAVLD-ARQQQ 191
                 566777778888888775.33333 PP

  == domain 3  score: 52.4 bits;  conditional E-value: 3.2e-17
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisp......tvd.....aktg.... 85 
                 +rAp+dGv+    ++ g++v++g+ ll+++p   l+++a   + +l+ ++ +gq++t+ +d  +++t kg + +++p      +       a tg    
  CTQ28206.1 215 IRAPFDGVIGNRRAWSGSFVSSGTQLLSLVPAHGLWIDANFKENQLAHMR-AGQPATIVADVLPNHTFKGHVASLAPatgsrfS-IlpaenA-TGnftk 310
                 9************************************************7.**********99999***********5555442.0333331.223444 PP

      HlyD_3  86 ...aykvevslenpekksiplkpG 106
                    +++v+++le +  k + l+pG
  CTQ28206.1 311 ivqRVPVRIALEGDGAKLDVLRPG 334
                 444788999999887888888877 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   3.3     5e-17   1.1e-13       4      48 ..      50      94 ..      47     112 .. 0.92
   2 ?    2.9   4.2     0.043        97      30      49 ..     182     203 ..     181     204 .. 0.87
   3 ?   -1.7   0.0       1.2   2.7e+03       4      15 ..     214     225 ..     213     247 .. 0.67

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 5e-17
  Biotin_lipoyl_2  4 sIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaq 48
                      I+++vsG + ql+V+d++ Vk+Gd+L+++D+r++++ala+a + 
       CTQ28206.1 50 AISSKVSGYIQQLAVQDNMAVKKGDLLIRIDDRDYRAALAKAAGE 94
                     69**************************************97655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.043
  Biotin_lipoyl_2  30 LaelDsralq..lalaqaeaql 49 
                      La+lD r+ q  +alaqa+a+l
       CTQ28206.1 182 LAVLDARQQQilAALAQAQANL 203
                      7899999888879*******98 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.2
  Biotin_lipoyl_2   4 sIaapvsGrVaq 15 
                       I ap++G++  
       CTQ28206.1 214 DIRAPFDGVIGN 225
                      589999998855 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   3.4e-10   7.6e-07       4      73 ..      25     336 ..      15     342 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 3.4e-10
                 EEEEEEEEE.......................................................................................... CS
                 xxxxxxxxx.......................................................................................... RF
        HlyD   4 vfvawaala.......................................................................................... 12 
                  + +w+ ++                                                                                          
  CTQ28206.1  25 YGAYWWHTGrfmqttddayvggdisaisskvsgyiqqlavqdnmavkkgdlliriddrdyraalakaagevaaqqaaladiqatrqlqqatiagsaasl 123
                 567888888888888888888888888888888888888888888888888888888888888889999999999999999999999999999999999 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  CTQ28206.1 124 laataateklandnrrynalaassaisaqirdnasadyrrahaeqekakadktvaerqlavldarqqqilaalaqaqanlemarlnlsytdirapfdgv 222
                 999999999999999999999999999999999999999999999999999999999****************************************** PP

                 ..................................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSB......................EEEEE CS
                 ..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxx RF
        HlyD  13 ..................................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispd......................rvpvr 55 
                                                   e++l ++r+gqp++++ d +p     +f g V++ +p+                      rvpvr
  CTQ28206.1 223 ignrrawsgsfvssgtqllslvpahglwidanfkENQLAHMRAGQPATIVADVLPNH---TFKGHVASLAPAtgsrfsilpaenatgnftkivqRVPVR 318
                 *********************************************************...9************************************** PP

                 EEEEEEETTEEEESSSS- CS
                 xxxxxxxxxxxxxxxxxx RF
        HlyD  56 vvvekaqgpyyplriglk 73 
                 + +e ++ +  +lr gl+
  CTQ28206.1 319 IALEGDGAKLDVLRPGLS 336
                 ****99999888888887 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   8.4e-06     0.019      45      73 .]      51      79 ..      48      79 .. 0.95
   2 ?    2.4   0.0     0.061   1.4e+02      43      71 ..     213     241 ..     211     243 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.4e-06
                   EEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 45 ieapkaGvvkeilvkeGdtvevgdllaki 73
                   i+++++G+++++ v+++ +v+ gdll++i
     CTQ28206.1 51 ISSKVSGYIQQLAVQDNMAVKKGDLLIRI 79
                   89************************987 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.061
                    EEEEBSSSEEEEEESSTTTEEE-TTCEEE CS
  Biotin_lipoyl  43 meieapkaGvvkeilvkeGdtvevgdlla 71 
                    ++i ap +Gv+    + +G+ v++g+ l+
     CTQ28206.1 213 TDIRAPFDGVIGNRRAWSGSFVSSGTQLL 241
                    5799********99999999999999887 PP

>> YqfD  Putative stage IV sporulation protein YqfD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   6.6e-05      0.15     205     245 ..      62     100 ..      54     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.6e-05
        YqfD 205 plvkegdtVkkGdvLIsgvieekegktryvhAkGeViarvw 245
                  +v+ +++VkkGd+LI     +++ +  + +A GeV a+  
  CTQ28206.1  62 LAVQDNMAVKKGDLLIRID--DRDYRAALAKAAGEVAAQQA 100
                 6899************755..66999999*******99865 PP

>> ComP_DUS  Type IV minor pilin ComP, DNA uptake sequence receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   3.8     0.032        73       5      56 ..     109     161 ..     106     176 .. 0.71
   2 ?    5.2   0.1     0.018        40       7      36 ..     184     212 ..     181     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.032
                 XXXHHHHHHHHHHHHHHHHHHHHHHHHHCTS-...S.GGGGTSS-SB-TTSSE CS
    ComP_DUS   5 eyvrkarRaeakaaLleaaqalEryytqngtY.asesaaeklassaasqnkyY 56 
                 ++ ++a  a  +a Ll a +a E+   +n++Y a +++++ +a+  ++ ++ Y
  CTQ28206.1 109 RQLQQATIAGSAASLLAATAATEKLANDNRRYnALAASSAISAQIRDNASADY 161
                 567888889999********************533333333444445555555 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.018
                 XHHHHHHHHHHHHHHHHHHHHHHHHHCTS- CS
    ComP_DUS   7 vrkarRaeakaaLleaaqalEryytqngtY 36 
                 v+ ar ++  aaL +a+++lE ++  n +Y
  CTQ28206.1 184 VLDARQQQILAALAQAQANLEMAR-LNLSY 212
                 889999***************987.67777 PP

>> Mobilization_B  Mobilization protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0  10.1         8   1.8e+04      17      84 ..      89     151 ..      76     161 .. 0.59
   2 ?   14.4   4.0   1.7e-05     0.037      34     126 ..     166     259 ..     137     263 .. 0.80

  Alignments for each domain:
  == domain 1  score: -5.0 bits;  conditional E-value: 8
  Mobilization_B  17 aeeieplaqsmatladearqviaevqqaseeqaaewlkaqrqagaawvelakelrevaaelakaaqsa 84 
                     a+    +a   a+lad   q   + qqa+ + +a  l     a+aa  +la++ r   a  a++a sa
      CTQ28206.1  89 AKAAGEVAAQQAALADI--QATRQLQQATIAGSAASLL---AATAATEKLANDNRRYNALAASSAISA 151
                     44444555556666663..5555666666655444333...345666666666666655555555444 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1.7e-05
  Mobilization_B  34 arqviaev.qqaseeqaaewlkaqrqagaawvelakelrevaaelakaaqsarsaargwtwklwagvliasvtpilalliaswlwlepqiieqq 126
                     a q  a++ +  +e q a    +q+q  aa  ++  +l  +  +l+ +   a         + w+g +++s t +l+l+ a  lw++ +  e+q
      CTQ28206.1 166 AEQEKAKAdKTVAERQLAVLDARQQQILAALAQAQANLEMARLNLSYTDIRAPFDGVIGNRRAWSGSFVSSGTQLLSLVPAHGLWIDANFKENQ 259
                     4444444414467999999999******************999999998888877777789**************************9998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1217  (0.0678789); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2494.59
//
Query:       CTQ28207.1  [L=520]
Description: Drug:H+ antiporter-2 (14 Spanner) (DHA2) family drug resistance MFS transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-38  131.2  45.6    4.2e-38  131.2  45.6    2.0  2  MFS_1      Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.22   10.6   0.1       0.32   10.0   0.1    1.1  1  DNA_pol_A  DNA polymerase family A


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.2  45.6   4.6e-42   4.2e-38       2     352 ..      28     421 ..      22     430 .. 0.90
   2 ?   -0.9   0.4     0.067     6e+02      94     141 ..     464     511 ..     454     515 .. 0.68

  Alignments for each domain:
  == domain 1  score: 131.2 bits;  conditional E-value: 4.6e-42
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +++ f++ +++ i++++l   ++  l +  +e  ++ t y ++ ++ +++ G+l+  ++ r+++ +++++f l++ll+ +a ++  ++++r+lqGl++g
  CTQ28207.1  28 CVGMFIALIDIQIVSASLR-DIGGGLSAGDDETVWVQTSYLIAEIIIIPLSGWLARVMSTRWLFAASAAGFTLMSLLCGWAWNIQSMIAFRALQGLAGG 125
                 4567777777777777777.8999999***********************************************777777899999************* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 +++p++ + + + f +++r  a + +++ +sl++ lgp +gg+++++++W+++f+i+ + ++  +v + ll+ ++  ++   ++++ +           
  CTQ28207.1 126 SMIPLVFTTAFAFFQGKQRVIAAATIGGLASLAPTLGPTVGGWITENYNWHWLFFINVVPGIYIAVAVPLLVKVDSADPTLLRGADYLsilllalslgc 224
                 ************************************************************************************9999*********** PP

       MFS_1 189 ................kgtgpaplvp.......awkallkdpvl..w.........illialllfffgfsglltllplylqevlglsglllaglllall 253
                                 +    +++v        +++ l++++++  +         +  + ++++++g++++ +l+plyl +v+g+s +l++gl++  +
  CTQ28207.1 225 leytleegprwgwfddATLTTTAWVAllcgvafVIRTLRHPQPVmdLralqdrtfsLGCYFSFMAGVGIFATIYLTPLYLGSVRGFS-ALEIGLAVFST 322
                 *****999998888885555555555777888888888888877451444555545455555555678888****************.8****999999 PP

       MFS_1 254 alvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 +l+ +++ ++ ++l++r+  r+ l+ +l++++++  +++++ + + a  lll+ ++ G+++ f++++  +l+  ++pp +   asglfn++++lgga+g
  CTQ28207.1 323 GLFQVMSIPFYSWLANRVDLRWLLMAGLIGFAVSMYSFVPITHDWGADQLLLPQAFRGLAQQFAVAPTVTLTLGSLPPARLKLASGLFNLMRNLGGAIG 421
                 9999999*************************************999999999999*****************************************98 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.067
       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllg 141
                 +qG+   a+ +a++  +++++ +e r++a++ +   + +G++l++ll 
  CTQ28207.1 464 VQGISPDAAQTAALKNLSALALREARTQAFSDAFYLIMMGFLLAALLV 511
                 677777777777777777777777888877766666666666555554 PP

>> DNA_pol_A  DNA polymerase family A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   3.5e-05      0.32     267     317 ..     433     483 ..     427     499 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.5e-05
                 ETTCSEEEECTTT-CCHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   DNA_pol_A 267 tllgrrrylpeiksknaalrekaeraavNapiQGsAaDiiklamikieeal 317
                 t l+ +r  +++++ n a + + +r+a N+++QG + D  + a +k  +al
  CTQ28207.1 433 TNLHYSRLADHLNNANLAMSDFVQRSAANFTVQGISPDAAQTAALKNLSAL 483
                 55666788889*************************999999887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3948.97
//
Query:       CTQ28208.1  [L=424]
Description: 3-oxoacyl-(acyl-carrier-protein) synthase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-61  205.9   2.5    1.3e-60  205.2   2.5    1.4  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    5.2e-34  116.8   3.1    7.9e-34  116.2   1.7    2.0  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    2.9e-05   23.6   1.6      5e-05   22.8   0.4    1.8  2  Thiolase_N       Thiolase, N-terminal domain
  ------ inclusion threshold ------
      0.028   14.4   3.1      0.046   13.7   0.2    2.8  3  PSI_PSAK         Photosystem I psaG / psaK
       0.14   12.0   2.4        1.2    9.0   0.8    2.6  2  ACP_syn_III      3-Oxoacyl-[acyl-carrier-protein (ACP)] synth


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.2   2.5   3.5e-64   1.3e-60       2     253 .]       6     259 ..       5     259 .. 0.87

  Alignments for each domain:
  == domain 1  score: 205.2 bits;  conditional E-value: 3.5e-64
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllleaa 96 
                    ++++++Gmg++ P g +v+ +w++Ll+g++++++l      ++ + d p ++ag++++      d    fdp    i+++e ++md+++ ++l+aa
     CTQ28208.1   6 KRIVVTGMGIVSPLGCGVQHVWQSLLAGKSGVTRLS-----EQLVADIPCKVAGQVPS---IDSDpLHGFDPL-ATIPAKERKKMDRFIEFALVAA 92 
                    69*******************************999.....6888899*********9...333467788875.679******************* PP

                    HHHHHHHTS-HHTC.TTGGEEEEEEESST..HH..HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHH CS
  ketoacyl-synt  97 wealedagltpeel.dgsrvgvfiGvgag..dy..aalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavq 187
                    +eal +ag++p++  +++r++ +i++g+g  ++  +a  + de+g +++ sp++++++lan +ag++s+a+g+rGp  +++tAC++++ a+  a +
     CTQ28208.1  93 REALTQAGWSPASAaEQERTATVIATGIGgfSEiaNAVHTTDERG-PRRLSPFTIPSFLANLAAGHVSIAHGFRGPIGAPVTACAAGAQAIGDAAR 187
                    ************9955555**********5433433333444333.9****************************************55555555* PP

                    HHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TT...SGGGTTBTTB...-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 188 slrsgeadvalaGGvellltpeavagfsaagllspd...grckafdpka...dGfvlGEGvGavvLkrleda 253
                    ++rsgead+al+GG+e++++  ++agf+aa++ls+    +++ a++p++   dGfv+GEG+G++v+++le+a
     CTQ28208.1 188 MIRSGEADIALCGGAEAAIHRVSLAGFAAARALSSAysdQPESASRPFDrdrDGFVMGEGAGLIVIESLEHA 259
                    *******************************666555878888888888888*****************987 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.73   2.6e+03      30      43 ..      92     105 ..      70     166 .. 0.64
   2 !  116.2   1.7   2.2e-37   7.9e-34       1     117 [.     267     379 ..     267     380 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.73
                      HHHHHHHHT--GGG CS
  Ketoacyl-synt_C  30 iekalaeagvdped 43 
                       ++al +ag +p++
       CTQ28208.1  92 AREALTQAGWSPAS 105
                      56666666666654 PP

  == domain 2  score: 116.2 bits;  conditional E-value: 2.2e-37
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      +a+++g++++ d++h ++  ++g++++ra+e a+++agv+ +++d+++ah+t+t++gD+ El+a+k++fg++     +a++S+Ks +GHl++Aa
       CTQ28208.1 267 LAELVGYGTSADAYHLTAGPEDGNGARRAMEIAIRQAGVTVDEIDHINAHATSTQVGDKGELAAIKTLFGAHP----VAITSTKSATGHLLGAA 356
                      699********************************************************************87....***************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      G +e+i +++al+++v+pptlnl
       CTQ28208.1 357 GGIEAIFTIQALRDQVVPPTLNL 379
                      **********************8 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.4   1.4e-08     5e-05      84     114 ..     174     204 ..     155     226 .. 0.91
   2 ?   -1.4   0.0      0.34   1.2e+03      29      49 ..     294     314 ..     292     337 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.4e-08
                 GGGHHHHHHHHHHHHHHTTSHSEEEEEEEEE CS
  Thiolase_N  84 vcsSglkavalaaqsiaageadvvvagGvEs 114
                 +c+ g++a+ +aa++i++gead++++gG+E 
  CTQ28208.1 174 ACAAGAQAIGDAARMIRSGEADIALCGGAEA 204
                 7*****************************7 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.34
                 HHHHHHHHHHTS-GGGCCEEE CS
  Thiolase_N  29 ealkallekagvdpeevdevi 49 
                 +a++ ++ +agv+ +e+d++ 
  CTQ28208.1 294 RAMEIAIRQAGVTVDEIDHIN 314
                 68899999**********985 PP

>> PSI_PSAK  Photosystem I psaG / psaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   1.3e-05     0.046      13      56 ..      87     158 ..      84     164 .. 0.94
   2 ?   -2.2   0.1       1.2   4.4e+03      52      59 ..     348     355 ..     341     360 .. 0.84
   3 ?   -1.2   0.2      0.57     2e+03      24      47 ..     368     394 ..     351     397 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
                 HHHHHHHT-T--SS--S-............................--------------TTGGGHHHHHHH CS
    PSI_PSAK  13 lalaiGRfaiqkrgkgPt............................lpvndPallagFnlvdllAtgSlGHi 56 
                 +al+++R a+ + g  P+                               + P+ l+ F+++ +lA  + GH+
  CTQ28208.1  87 FALVAAREALTQAGWSPAsaaeqertatviatgiggfseianavhtTDERGPRRLSPFTIPSFLANLAAGHV 158
                 89***************99************************98888889********************7 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
                 HHHHHHHH CS
    PSI_PSAK  52 SlGHilGa 59 
                 + GH+lGa
  CTQ28208.1 348 ATGHLLGA 355
                 679***97 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.57
                 -SS--..S----------.-----TTG CS
    PSI_PSAK  24 krgkg..PtlpvndPall.agFnlvdl 47 
                  r+++  Ptl++  P+   ag nlv l
  CTQ28208.1 368 LRDQVvpPTLNLHHPDEDaAGMNLVAL 394
                 355666799999999654488888876 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.8   0.00033       1.2       5      36 ..     173     204 ..     172     211 .. 0.92
   2 ?    1.6   0.0     0.072   2.6e+02      37      64 ..     231     256 ..     216     265 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00033
                  -GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEE CS
  ACP_syn_III   5 aaCsgfvyalsvAdaliesgaakrvLvigaet 36 
                  +aC++  +a+  A+++i+sg+a  +L  gae+
   CTQ28208.1 173 TACAAGAQAIGDAARMIRSGEADIALCGGAEA 204
                  59************************999997 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.072
                  GGGCS-TTTHHHHTTB-EEEEEEEEEEE CS
  ACP_syn_III  37 lskilDwkdrstavlfGDGAgAvvleas 64 
                   s+ +D+   +  +++G GAg +v+e  
   CTQ28208.1 231 ASRPFDR--DRDGFVMGEGAGLIVIESL 256
                  5555555..3445789********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 3551.93
//
Query:       CTQ28209.1  [L=65]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.01   16.1   0.1      0.013   15.8   0.1    1.1  1  DMT_YdcZ  Putative inner membrane exporter, YdcZ
      0.096   12.7   0.0       0.11   12.6   0.0    1.1  1  DUF1422   Protein of unknown function (DUF1422)


Domain annotation for each model (and alignments):
>> DMT_YdcZ  Putative inner membrane exporter, YdcZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   0.1   1.5e-06     0.013     108     138 ..      11      41 ..       8      42 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.5e-06
    DMT_YdcZ 108 liDhfGlfgvekrplsltrllGlllllaGvv 138
                 liD+fG++  + +p+s++r+ +++ l ++++
  CTQ28209.1  11 LIDNFGWLDNASIPFSMSRIGAIVSLGIALY 41 
                 8**********************99988876 PP

>> DUF1422  Protein of unknown function (DUF1422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.2e-05      0.11      23      63 ..      14      57 ..       4      61 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.2e-05
     DUF1422 23 tlsalfsslvpfs...ifplialvlavyclyqrYlnksleeglP 63
                 + +l ++ +pfs   i ++++l +a+y +y   + k+ + ++P
  CTQ28209.1 14 NFGWLDNASIPFSmsrIGAIVSLGIALYLIYSSSRAKAATVEIP 57
                68899*******944445889***********999999998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 526.07
//
Query:       CTQ28210.1  [L=53]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 434.66
//
Query:       CTQ28211.1  [L=136]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-24   84.6   0.0    7.6e-24   84.3   0.0    1.1  1  ASCH      ASCH domain


Domain annotation for each model (and alignments):
>> ASCH  ASCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   4.3e-28   7.6e-24       3     107 .]      25     134 ..      17     134 .. 0.93

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 4.3e-28
                 E-TTHHHHHHTTS--EE......EESSTTTGGGT-CEEEEEECCCCTSEEEEEEEEEEEEEEHHHHHHHHHCHCC--...-HCHHHHHHHCCHHHHHCC CS
        ASCH   3 fhqelaslivsGkKtae......irvwdeelpkvrgdllilaalkptgralgivevtkvevkpfeevteehalkege...sleewrevheefyeeesee 92 
                 + +ela+li++G+Kta       ++ ++e++p++ g ++i+  l++++ +++++++ +   ++f +vte++a kege   sle+w+++h++f+++e + 
  CTQ28211.1  25 LANELADLIKKGIKTAScgsfasYQ-QEESAPRI-GSYNII--LDGQNVPVCVIRLISMQLVRFCDVTEAFARKEGEgdlSLEYWKKEHQRFFSSEGHF 119
                 4578*****************9887.77788998.******..****************************************************9655 PP

                 EEEEEEEEEEEEEEE CS
        ASCH  93 yedelvvveefelve 107
                 +ed+++++eefe+ve
  CTQ28211.1 120 SEDMELIAEEFEVVE 134
                 *************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 1136.91
//
Query:       CTQ28212.1  [L=299]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   11.9   0.1       0.57   10.0   0.1    1.8  1  DUF2691   Protein of unknown function (DUF2691)


Domain annotation for each model (and alignments):
>> DUF2691  Protein of unknown function (DUF2691)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   3.2e-05      0.57      58     151 ..     117     211 ..     105     212 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 3.2e-05
     DUF2691  58 egeelkktl.kkkdyYliFadlkafpkkklakdiktyeeflkskcelvllivDssyvtiyckdqeiiekl.yknakeqgfedieyitdendlrtel 151
                  g+++ + +  ++ y + F++   f++k+l+ +++tye+f  + c+    +   ++ t+     +++  +  +   ++  e+  yi +end+r++l
  CTQ28212.1 117 PGQSFPQGIpDQYIYATSFSEPPEFNDKSLTLQVATYEDFDWC-CQALGDAYKHTWQTVRELSASNLVAVdDEELCDHISEREVYIIYENDVRAGL 211
                 56677777744556667899999*****************876.7777777777777776665555555514455666677788999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2486.83
//
Query:       CTQ28213.1  [L=264]
Description: AraC-type regulatory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-18   65.9   0.3    6.9e-18   64.7   0.1    1.7  2  HTH_18        Helix-turn-helix domain
    2.8e-10   40.2   0.3    5.5e-10   39.3   0.3    1.4  1  AraC_binding  AraC-like ligand binding domain
    1.1e-07   31.8   0.1      0.026   14.6   0.1    2.5  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
     0.0016   18.1   0.0     0.0028   17.3   0.0    1.3  1  Cupin_2       Cupin domain
  ------ inclusion threshold ------
        0.1   12.3   0.0        2.2    8.0   0.0    2.3  2  Raf1_HTH      Rubisco accumulation factor 1 helix turn helix 


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.6   2.2e+03      33      54 ..     168     190 ..     164     192 .. 0.68
   2 !   64.7   0.1   1.9e-21   6.9e-18       2      78 ..     188     262 ..     187     263 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.6
                 HHHHHHHHHSSS.---HHHHHHH CS
      HTH_18  33 lerArrlLlent.glsvaeiAla 54 
                 + +Ar+lL+++  + s++e+A+ 
  CTQ28213.1 168 FSAARSLLVNQRwEASLSELAFM 190
                 56788888754357888888875 PP

  == domain 2  score: 64.7 bits;  conditional E-value: 1.9e-21
                 HHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHH CS
      HTH_18   2 aaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPsey 78 
                 a + ++s+rt++rlf + +g +++++ +r R+++  +lL+   g +++++A++lGFs +++F++afr ++g tP+++
  CTQ28213.1 188 AFMSAMSERTFSRLFMKDTGFSFRTWKQRARICASLDLLA--NGVPIKQVAYQLGFSCPAAFTAAFRCILGSTPRDF 262
                 55789********************************996..6********************************98 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.3   1.5e-13   5.5e-10      17     136 .]      38     149 ..      26     149 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1.5e-13
                   EEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG---EEETTEEE..E---TTTHHHHHHH CS
  AraC_binding  17 pphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegelleriledssilagapllpalledeelaqllral 113
                   pph+h e ++   t+G+  ++ +  ++ ++p   ++lpp ++H+y+  s     +r +yf+ +l+++ +  + ++        +++ ++ + l  +l
    CTQ28213.1  38 PPHHHVEGQLLFATRGVMLVQTESDRWVIPPQRALWLPPLHIHSYHLLS--QTDLRAIYFSSSLIAECTSFTKSQ--------QVHVITATPLVKEL 124
                   89***********************************************..9**********9999995533322........99************ PP

                   HHHH..HHHHT-SSTTHHHHHHHHH CS
  AraC_binding 114 frll..eetrsgddllleallyell 136
                   ++ l  e  +++++ ++  ll+e+l
    CTQ28213.1 125 IAGLfsEDYARPSQRKIALLLLEIL 149
                   *****99999999999999999876 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   7.3e-06     0.026      10      38 ..     183     211 ..     181     213 .. 0.91
   2 !   14.6   0.0   7.3e-06     0.026       6      40 ..     227     262 ..     225     263 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.3e-06
                 -HHHHHHHTTSSHHHHHHHHHHHSSS-HH CS
    HTH_AraC  10 tiediAdelgfSrsyFsrlFkketGmtPs 38 
                 ++ ++A +  +S+++FsrlF k tG +++
  CTQ28213.1 183 SLSELAFMSAMSERTFSRLFMKDTGFSFR 211
                 7899****************999999876 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 7.3e-06
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqy 40 
                 +++  i+++A +lgf  +  F+ +F+ ++G tP+ +
  CTQ28213.1 227 ANGVPIKQVAYQLGFsCPAAFTAAFRCILGSTPRDF 262
                 56789**********77****************987 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.8e-07    0.0028       4      68 ..      30      93 ..      28      96 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.8e-07
                EEETTEEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEE CS
     Cupin_2  4 elppGesapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparll 68
                +++ Ge+ p+h+H +  ++++  +G + ++ ++ ++++ +  ++  p+   H ++  +++++r +
  CTQ28213.1 30 SYQRGEVDPPHHHVEG-QLLFATRGVMLVQTESDRWVIPPQRALWLPPLHIHSYHLLSQTDLRAI 93
                57899*********99.**************************************9999999875 PP

>> Raf1_HTH  Rubisco accumulation factor 1 helix turn helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00062       2.2      31      54 ..      95     118 ..      88     123 .. 0.90
   2 ?    1.8   0.0     0.056     2e+02      15      27 ..     212     224 ..     209     242 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00062
    Raf1_HTH  31 yspqeIfEaTGiepvqQnqliVaa 54 
                 +s++ I E T ++++qQ  +i+a+
  CTQ28213.1  95 FSSSLIAECTSFTKSQQVHVITAT 118
                 78999*****************97 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.056
    Raf1_HTH  15 sWvewakaiqqLq 27 
                 +W ++a+++++L 
  CTQ28213.1 212 TWKQRARICASLD 224
                 8*********984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1993.02
//
Query:       CTQ28214.1  [L=241]
Description: putative glutamine amidotransferase-like protein YfeJ [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-15   55.1   0.0    1.1e-14   54.6   0.0    1.1  1  GATase         Glutamine amidotransferase class-I
     0.0035   17.1   0.0     0.0053   16.5   0.0    1.3  1  Peptidase_C26  Peptidase C26
  ------ inclusion threshold ------
      0.021   14.4   0.0      0.031   13.9   0.0    1.2  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   1.9e-18   1.1e-14      39     176 ..      42     185 ..      18     194 .. 0.85

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 1.9e-18
                 THHSTSEEEEEEESSCTT..........TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEEEEEEEEEEETTT..CGGTTTTSEEEEE CS
      GATase  39 llknpdgilvsgGpgspg..........vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekehhggtmrlgddet..allyglknevier 125
                  + ++d ++v gGp +p           ++ + ++i  a + ++ ++GICLG Ql+++++g++  +  eke  +  + l++d++  + +++ ++++++ 
  CTQ28214.1  42 DAVGIDFLVVMGGPQDPDttleacphfnAKAEQALIASAVKTGKAVIGICLGSQLIGEALGAPFSHSPEKEIGKFPITLTEDGRkdEMFSHFGKTLEVG 140
                 367899**************9999999888888899999999***********************999888888888888888799************* PP

                 EEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTS CS
      GATase 126 hrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEstst 176
                 h+H+++      +  + +++a s ++     i+  +++++g+Q+H E t+ 
  CTQ28214.1 141 HWHNDMPG----LTPEAKIIAYS-EG-CPRQIVAYSDRVFGFQCHMELTLD 185
                 *****966....67779999999.67.5999999999**********9875 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.8e-07    0.0053      92     124 ..      71     103 ..      44     124 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.8e-07
  Peptidase_C26  92 alelaLiraalergvPilgiCrGlqllnvalGG 124
                    + e aLi++a++ g+ ++giC+G ql+  alG 
     CTQ28214.1  71 KAEQALIASAVKTGKAVIGICLGSQLIGEALGA 103
                    56899**********************999995 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   5.1e-06     0.031      44      96 ..      50     105 ..      27     124 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.1e-06
    GATase_3  44 vilpGgkd...tiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpe 96 
                 v+++G +d   t+++  + +++  +  i++a+++g+ v+giC G q+ Ge +  p 
  CTQ28214.1  50 VVMGGPQDpdtTLEACPHFNAKAEQALIASAVKTGKAVIGICLGSQLIGEALGAPF 105
                 445555541113333344455566667999********************997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1848.27
//
Query:       CTQ28215.1  [L=83]
Description: hypothetical protein CH1034_220191 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 707.47
//
Query:       CTQ28216.1  [L=231]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-16   61.4   0.0    1.6e-09   37.8   0.0    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    1.5e-12   48.6   0.0    2.5e-12   47.9   0.0    1.4  1  Abhydrolase_6  Alpha/beta hydrolase family
    3.9e-11   42.7   0.0    6.2e-11   42.0   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
    1.6e-06   28.4   0.0    2.3e-06   27.9   0.0    1.3  1  Thioesterase   Thioesterase domain
    1.8e-06   28.1   0.0    2.5e-06   27.6   0.0    1.2  1  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
    2.2e-05   24.4   0.0      0.014   15.3   0.0    2.1  2  Ser_hydrolase  Serine hydrolase
    5.1e-05   23.0   0.0     0.0002   21.1   0.0    1.8  1  FSH1           Serine hydrolase (FSH1)
     0.0003   19.6   0.0    0.00056   18.7   0.0    1.4  1  Ndr            Ndr family
    0.00053   20.0   0.0      0.001   19.1   0.0    1.6  1  UPF0227        Uncharacterised protein family (UPF0227)
    0.00055   19.8   0.0    0.00069   19.5   0.0    1.3  1  Palm_thioest   Palmitoyl protein thioesterase
     0.0025   17.6   0.0      0.013   15.3   0.0    1.9  2  Abhydrolase_5  Alpha/beta hydrolase family
     0.0027   17.3   0.0      0.063   12.8   0.0    2.1  2  DLH            Dienelactone hydrolase family
     0.0029   17.3   0.0     0.0029   17.3   0.0    1.2  1  Esterase       Putative esterase
  ------ inclusion threshold ------
      0.012   15.4   0.0       0.04   13.6   0.0    1.7  2  PGAP1          PGAP1-like protein
      0.033   14.0   0.0       0.12   12.2   0.0    1.8  1  Abhydrolase_3  alpha/beta hydrolase fold
      0.043   13.4   0.0       0.11   12.1   0.0    1.4  1  LIDHydrolase   Lipid-droplet associated hydrolase
        0.1   12.1   0.0       0.15   11.5   0.0    1.3  1  DUF676         Putative serine esterase (DUF676)
       0.12   12.1   0.0       0.34   10.7   0.0    1.7  2  Abhydrolase_2  Phospholipase/Carboxylesterase
       0.13   11.7   0.0        1.1    8.7   0.0    2.0  2  Esterase_phd   Esterase PHB depolymerase
       0.18   10.9   0.0        1.9    7.5   0.0    2.0  2  DUF2048        Abhydrolase domain containing 18


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.8e-12   1.6e-09      69     114 ..      54     101 ..      29     118 .. 0.76
   2 !   21.9   0.0   1.3e-07   0.00011     193     256 ..     155     216 ..     103     217 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.8e-12
                    HCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE..CSSCCHHH CS
  Abhydrolase_1  69 algddkltlvGhSmGGmialayaaeyperVkalvllga..idpaasli 114
                     l  +k+ l+G+SmGG ia+++aae+perV +lvl+++   ++ +   
     CTQ28216.1  54 TLLPEKFSLIGFSMGGYIARQLAAEFPERVESLVLIASslREDTPLEA 101
                    56779999******************************5433333333 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 1.3e-07
                    HHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 193 pttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafleg 256
                     t  s ++++       + +ptlvi++++D + + k+ e+l +++p ++l++i d+gH++ le 
     CTQ28216.1 155 ITQSSLSRQGIP--SATIRCPTLVIASEDDAIRSMKEAEELVEAIPYASLRIILDCGHMIPLEQ 216
                    333333333333..458999***************************************98875 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   2.8e-15   2.5e-12       2     219 ..       9     222 ..       8     223 .. 0.61

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 2.8e-15
                    EEE--GC.....GCHHHHHHHHCCTCEEEEE--TTS.TS-GGCS--HHHCHHH.HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.......EE CS
  Abhydrolase_6   2 lllHGagssassWlvapLaallaagvhvlapDlpGh.Grsdpppldledladl.aalldelaagggpvvlvGHSlGGalalaaapla.....lvvg 90 
                    +l++G+ ++   W+  ++  +l++ +  ++  +  + G       +    +d+  +l++ l   + ++ l+G S+GG++a +   la     +v++
     CTQ28216.1   9 VLIPGFMLNEMLWH--EFETYLPSNC--IVHHAAVTeG------RTI---HDVvQHLITLL---PEKFSLIGFSMGGYIARQ---LAaefpeRVES 85 
                    56666555555555..5555555555..3333322223......444...55545566666...899***************...44444887777 PP

                    .EEES-..----TTTS----TTHHHHHHTT-CCCCHCCH..S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHC..........HTTCCHHTT-TTGC CS
  Abhydrolase_6  91 .vlldppptalpagllaaalelllallallrllawlsre..plprlfladedadaawrarlarlaallaglg..........llpaaawadlpvpl 173
                     vl+++   +l+ +  +  +e  ++  ++l + ++  +   + +r++++     ++ +++ ++ ++  ++lg           +   + a++++p+
     CTQ28216.1  86 lVLIAS---SLREDT-PLEAEAKRKSVQSLSPTTFKGLSrhAIARSLHP---LNTSNQDMISAIQKMGCSLGfeafitqsslSRQGIPSATIRCPT 174
                    9*****...666665.333333343333333344443111223335555...45888888888887777666443333322233477999999999 PP

                    EEECTT-CHHHHC..HHCCCH.STTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 174 lvlggeDplvprl..lerlla.qagarlpvvlpgaGHlphleepdevae 219
                    lv+++eD++++ +  +e+l   ++ a l  ++ ++GH++ le+p+e+a+
     CTQ28216.1 175 LVIASEDDAIRSMkeAEELVEaIPYASL-RIILDCGHMIPLEQPRELAR 222
                    9999999977755224455558899999.********99999*****97 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   6.9e-14   6.2e-11      66     238 ..      49     216 ..      43     217 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 6.9e-14
  Hydrolase_4  66 vekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikaklkappllklllkllgkllpklqvsnnlkadslsrdpevvaayeadpl 163
                  v+++ +  pe ++ l+G SmGG+ia +++++ p++v+ l+l+a+ l+ +++l+a +     +k +++l p+    ++l  + + r  + +   ++d +
   CTQ28216.1  49 VQHLITLLPE-KFSLIGFSMGGYIARQLAAEFPERVESLVLIASSLREDTPLEAEAK----RKSVQSLSPTTF--KGLSRHAIARSLHPLNTSNQDMI 139
                  5555544444.4899********************************9966544333....344444444433..35666888888888888888888 PP

  Hydrolase_4 164 v.hgkitvrlllelldamkrleer...aakitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHellnEp 238
                    ++k+  +l+ e++ ++++l ++    a i+ P+l++ +e+D + ++++++el+e+++    +l+++  + H++  E+
   CTQ28216.1 140 SaIQKMGCSLGFEAFITQSSLSRQgipSATIRCPTLVIASEDDAIRSMKEAEELVEAIP--YASLRIILDCGHMIPLEQ 216
                  88888888888888888888887633356788***************************..599999999999998875 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.5e-09   2.3e-06      55     229 ..      48     226 ..       6     228 .. 0.68

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.5e-09
                   HHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEEEEESCCCCCCHHCHHCCCHTTHHT..........HHHHHCCTTHHHCCTTTHCC CS
  Thioesterase  55 yaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavkslflidssapseteaqeasrraedee..........fveeltdlggtepeellede 141
                   ++++l +  pe  + l+G+S+Gg++A ++A++     + v sl+li+ss ++     ea+ + ++ +          +++ + + ++     + +d 
    CTQ28216.1  48 VVQHLITLLPE-KFSLIGFSMGGYIARQLAAEF---PERVESLVLIASSLRED-TPLEAEAKRKSVQslspttfkglSRHAIARSLHP-LNTSNQDM 138
                   45677778899.8***********986555555...567**********9977.5556655555555577777777755555555554.22222222 PP

                   HHHHHHHHHHHHHHHHHTCCS.....-TTSCSE....HHCEEEEEEGSS-CTCCCCCCCHCHCHCTCESCEEEEEESSHCCHHHSHHHHHHHHHHHH CS
  Thioesterase 142 ellsellpalradyraleqys.....lrpeaaq....klratlfngsddklkdldtlelaerweqktsgevsvhvlegdhfylledrleavleiiek 229
                       + +     ++  ++q s     +     +     +++ + + +dd + +++   +ae++ + ++ +  + +l+++h+  le ++ ++++ii  
    CTQ28216.1 139 ISAIQKMGCSLGFEAFITQSSlsrqgI-----PsatiRCPTLVIASEDDAIRSMK---EAEELVEAIPYASLRIILDCGHMIPLE-QPRELARIIVE 226
                   222222222223333355554334433.....245556*****************...6666**********************7.99999999865 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   2.8e-09   2.5e-06      18     140 ..      54     195 ..      44     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 2.8e-09
                 TB--SSEEEEEETHHHHHHHHHHHHSS.SEEEEEEES--SB--SSEEEETTE.....................EE----B-GGG-EE-TTS-EE-TT-B CS
      BAAT_C  18 kvkkdkigllGiSkGgelalllasflk.kisavvlingsavvvegklvykdes...................kvlpelklsmeklkvnknglldivdvl 96 
                 ++  +k  l+G S Gg +a  la+ ++  ++ +vli+ s       ++  +++                   + l +l+ s+++++   +++ ++    
  CTQ28216.1  54 TLLPEKFSLIGFSMGGYIARQLAAEFPeRVESLVLIASSLREDTPLEAEAKRKsvqslspttfkglsrhaiaRSLHPLNTSNQDMISAIQKMGCSLGFE 152
                 56678899*******************9***********988766666655557889****************************************99 PP

                 --TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHH CS
      BAAT_C  97 allkeklaekalipvekakgpillvvgedDknwpSkesaekase 140
                 a +++   +++ ip   +++p l++++edD + +S + ae+++e
  CTQ28216.1 153 AFITQSSLSRQGIPSATIRCPTLVIASEDDAI-RSMKEAEELVE 195
                 99999999*********************975.56666655554 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0039       3.5      46      94 ..      49     100 ..       8     143 .. 0.75
   2 !   15.3   0.0   1.6e-05     0.014     104     141 ..     161     198 ..     148     213 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0039
                    HHHHHHC-STTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SGG....S CS
  Ser_hydrolase  46 leaaveaaeekvvlvAHSlgclavlhaaelqlakkvagalLVapadve....e 94 
                    +++ ++ ++ek  l+  S+g  ++ ++a ++ +++v+  +L+a    e    e
     CTQ28216.1  49 VQHLITLLPEKFSLIGFSMGGYIARQLA-AEFPERVESLVLIASSLREdtplE 100
                    45556778999***********999999.9*************9876533332 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.6e-05
                    GCTTS-SSHHCCHCEEEEETTBTTC-HHHHHHHHHHCT CS
  Ser_hydrolase 104 efaplpreklpfpslvvaSenDpyvsfeeaeelaeawg 141
                    +++ +p+ + + p+lv+aSe+D + s++eaeel ea+ 
     CTQ28216.1 161 SRQGIPSATIRCPTLVIASEDDAIRSMKEAEELVEAIP 198
                    567799999************************99885 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.2e-07    0.0002     104     206 ..      60     216 ..      35     220 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.2e-07
        FSH1 104 dGiiGFSqGaalaallaslleellkea............................shpslkfailvsGfkleepk........................ 150
                   +iGFS G+ +a  la+++ e  ++                             +              +++++                        
  CTQ28216.1  60 FSLIGFSMGGYIARQLAAEFPERVESLvliasslredtpleaeakrksvqslsptT--------------FKGLSrhaiarslhplntsnqdmisaiqk 144
                 579******************98876578888888777776555444444443330..............33222555555555555556777777777 PP

        FSH1 151 ................yeeyyeedkiqtptLhvlGelDtvvdeerseaLaeafknsskvlkHpggHfvPnkk 206
                                  ++   +  i++ptL +  e+D++ + +++e+L+ea+   s  +  + gH++P ++
  CTQ28216.1 145 mgcslgfeafitqsslSRQGIPSATIRCPTLVIASEDDAIRSMKEAEELVEAIPYASLRIILDCGHMIPLEQ 216
                 77777766676544433334478889*****************************9999**********876 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   6.3e-07   0.00056      99     270 ..      58     222 ..      41     228 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.3e-07
                 --EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH.......TTTS-HHHHHHHHHS-HHHHHH...T-HHHHHHHHHHHT-TT CS
         Ndr  99 ksviglGvgaGAyilarfalkhperveglvLinitskaagwvewakeKlsskllkkvgltdllkdlllahkFgkeekse...nsdlvreyrkllkerln 194
                 +++  +G   G yi  + a+++perve+lvLi    + +   e  +++ s + l  +         l  h  ++  +     n+d++ +    +++   
  CTQ28216.1  58 EKFSLIGFSMGGYIARQLAAEFPERVESLVLIASSLREDTPLEAEAKRKSVQSLSPTT-----FKGLSRHAIARSLHPLntsNQDMISA----IQKMGC 147
                 556668999***********************99999888888765555544444444.....44444444444433222226778744....444444 PP

                 HHHHHHHH.HHHHT-------TTSSSS-EEEEEETTSTTHHHHHHHHHHS-TTTEE.EEEETT-TT-HHHH-HHHHHH CS
         Ndr 195 sknlelyl.eaynkRrdleierkklevkvllvvGdkspfvdevvevnskldkkktt.llkvadsgglvleeqPdklae 270
                 s   e ++ ++  +R+ + +   + ++++l++  +  +  + + e ++ ++    + l  + d+g ++  eqP  la+
  CTQ28216.1 148 SLGFEAFItQSSLSRQGIPS--ATIRCPTLVIASEDDAIRS-MKEAEELVEAIPYAsLRIILDCGHMIPLEQPRELAR 222
                 34455555234455655544..3556888877766655544.455566666554440444678999999999988886 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.1e-06     0.001      33     108 ..      32     110 ..      24     213 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.1e-06
     UPF0227  33 lsvlklkedpqqalkeleklvaelgddnillvGssLGGyyatrlgerfglrq...vllnPalkplenlagklgeeavqs 108
                  +v ++      +++ + + +  l +++  l+G s+GGy a  l++ f  r    vl++  l+ +  l+    +++vqs
  CTQ28216.1  32 CIVHHAAVTEGRTIHDVVQHLITLLPEKFSLIGFSMGGYIARQLAAEFPERVeslVLIASSLREDTPLEAEAKRKSVQS 110
                 56677778888899999999999999********************998776668889888888888877777776666 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   7.7e-07   0.00069      58     102 ..      48      92 ..      26     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 7.7e-07
  Palm_thioest  58 vckk..lelangfhaiGfSQGglflRaliercddkknvrnlislggp 102
                   v+++  + l+++f +iGfS Gg ++R l+ +  ++  v++l+ +++ 
    CTQ28216.1  48 VVQHliTLLPEKFSLIGFSMGGYIARQLAAEF-PER-VESLVLIASS 92 
                   455566446899*******************9.455.9****99985 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-05     0.013      46      97 ..      49      99 ..      28     136 .. 0.79
   2 ?    0.1   0.0      0.68   6.1e+02     100     128 ..     171     199 ..     154     210 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
  Abhydrolase_5 46 aeeiikeapklekfvvgGhslGGvvasrfaaee.ekiegvvflasYPekdels 97
                   ++++i   p  ekf + G s+GG +a ++aae  e++e++v++as   +d   
     CTQ28216.1 49 VQHLITLLP--EKFSLIGFSMGGYIARQLAAEFpERVESLVLIASSLREDTPL 99
                   455555555..69*****************98768*********987766433 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.68
  Abhydrolase_5 100 skkvlsivgteDgvlnvkslekakkflpk 128
                      ++l i +++D++ ++k++e+  + +p 
     CTQ28216.1 171 RCPTLVIASEDDAIRSMKEAEELVEAIPY 199
                    56799999999999999999987777765 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0     7e-05     0.063      96     125 ..      56      86 ..      33     109 .. 0.78
   2 ?    2.5   0.0     0.098        87     134     171 ..     161     198 ..     137     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7e-05
         DLH  96 stkkvgvvGfCmGGalalllaaev.pevdaa 125
                  ++k+ ++Gf mGG +a +laae  ++v+  
  CTQ28216.1  56 LPEKFSLIGFSMGGYIARQLAAEFpERVESL 86 
                 4799*******************96666655 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.098
         DLH 134 ekeleeaakikapilalfgeeDefipadevekleealk 171
                 +++ +  a i +p l+++ e D +  ++e+e+l ea+ 
  CTQ28216.1 161 SRQGIPSATIRCPTLVIASEDDAIRSMKEAEELVEAIP 198
                 55556678899********************9999985 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.2e-06    0.0029     104     147 ..      47      90 ..      38     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.2e-06
                 HHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEEES CS
    Esterase 104 plldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfS 147
                 +++++     p++ +++G+SmGG++A  la++ p+r  s    +
  CTQ28216.1  47 DVVQHLITLLPEKFSLIGFSMGGYIARQLAAEFPERVESLVLIA 90 
                 567777777888899*********************99876655 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.9   8.1e+02     103     125 ..      33      55 ..      32      59 .. 0.90
   2 ?   13.6   0.0   4.5e-05      0.04      89     129 ..      56      93 ..      42     122 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.9
       PGAP1 103 ivaraaltlknyikqsvntiltl 125
                 iv  aa+t  + i++ v+ ++tl
  CTQ28216.1  33 IVHHAAVTEGRTIHDVVQHLITL 55 
                 677899999************97 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 4.5e-05
       PGAP1  89 eptsviliGHSmGGivaraaltlknyikqsvntiltlasPh 129
                  p++  liG SmGG +ar ++      ++ v++++ +as +
  CTQ28216.1  56 LPEKFSLIGFSMGGYIARQLAA---EFPERVESLVLIASSL 93 
                 478889***********97653...3578888888888654 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013      0.12      66     120 ..      53     102 ..      34     210 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
                    HTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE-SSTSSTTSHHH CS
  Abhydrolase_3  66 lgadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyPvtdlertesesi 120
                    + + p++  l G S GG +a ++a ++ ++    v+ +vli   +   +t  e++
     CTQ28216.1  53 ITLLPEKFSLIGFSMGGYIARQLAAEFPER----VESLVLIASSLRE-DTPLEAE 102
                    5677999*********************98....6677777663322.1111111 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012      0.11      85     118 ..      58      90 ..      43      96 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
  LIDHydrolase  85 vklilvGHSvGaYialevlkrlsersikkvvlLf 118
                    k+ l+G S G Yia +++ +++er ++++vl+ 
    CTQ28216.1  58 EKFSLIGFSMGGYIARQLAAEFPER-VESLVLIA 90 
                   6899********************9.99999875 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00017      0.15      67     105 ..      45      84 ..      34     121 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
      DUF676  67 vlevvkkkkdk.nkkiSfvghSlGgliaraaiaklkekem 105
                 + +vv++      +k S++g+S+Gg iar   a   e+ +
  CTQ28216.1  45 IHDVVQHLITLlPEKFSLIGFSMGGYIARQLAAEFPERVE 84 
                 444555555545569**************98887776654 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00038      0.34      60     140 ..      18      93 ..       5     111 .. 0.70
   2 ?   -1.4   0.0       1.8   1.7e+03     127     180 ..     142     195 ..     135     224 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00038
                    T-EEE-SS-B--SSTTS.-B-HHHHHHHHHHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES--- CS
  Abhydrolase_2  60 gmrmpaWfdlvglspek.kedeagikksaekleelidaelkkgipssriiigGFSqGaalalylaltlpkklggivafsgal 140
                     m    W +  +  p++   + a      +++++++++ ++  +  ++  ++GFS+G+ +a +la   p+++   v + + l
     CTQ28216.1  18 EM---LWHEFETYLPSNcIVHHA-AVTEGRTIHDVVQHLIT--LLPEKFSLIGFSMGGYIARQLAAEFPERVESLVLIASSL 93 
                    44...477777777777333333.33345667777777765..5689999***********999999999888777665555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.8
                    SS--SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHH CS
  Abhydrolase_2 127 pkklggivafsgalplsqklessatavtkklpilqiHgeeDpvvplalgkaake 180
                     +k+g+ ++f  ++ +s+   +     t   p l i  e+D +  +  ++++ e
     CTQ28216.1 142 IQKMGCSLGFEAFITQSSLSRQGIPSATIRCPTLVIASEDDAIRSMKEAEELVE 195
                    567777777777777777666666666667777777777776665555555554 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.31   2.8e+02      97     125 ..      58      86 ..      34      96 .. 0.78
   2 ?    8.7   0.0    0.0012       1.1     135     195 ..     134     197 ..     106     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.31
  Esterase_phd  97 arvyvaGlsaGaaladllalhypdvfaav 125
                    +  + G+s G+ +a  la  +p++  ++
    CTQ28216.1  58 EKFSLIGFSMGGYIARQLAAEFPERVESL 86 
                   556678999**********9999997654 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0012
  Esterase_phd 135 eaadvisaldvmrrGlrqapaaavdalveag...aypglpalvvqGdadtvvavknaeslvval 195
                     +d isa++ m   l+ +   +  +l+  g   a    p+lv+  + d + ++k+ae+lv a+
    CTQ28216.1 134 SNQDMISAIQKMGCSLGFEAFITQSSLSRQGipsATIRCPTLVIASEDDAIRSMKEAEELVEAI 197
                   456899***********9999999999998733345678*********************9876 PP

>> DUF2048  Abhydrolase domain containing 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0022       1.9     176     210 ..      58      92 ..      31      99 .. 0.79
   2 ?    1.6   0.0      0.13   1.2e+02     297     333 ..     174     212 ..     120     228 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0022
     DUF2048 176 GplgltGlSmGGhmaslaasnwpkplvlvpclsws 210
                  +++l G SmGG  a   a+ +p  + ++ +++ s
  CTQ28216.1  58 EKFSLIGFSMGGYIARQLAAEFPERVESLVLIASS 92 
                 5899***********99999999999988888765 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.13
     DUF2048 297 ivvaAkdDayv.presvaslqeiwpgsevry.ldgGHvs 333
                 ++v A +D  +   ++ ++l e+ p +  r  ld GH+ 
  CTQ28216.1 174 TLVIASEDDAIrSMKEAEELVEAIPYASLRIiLDCGHMI 212
                 456777777674667777999999*999998799***74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 1753.17
//
Query:       CTQ28217.1  [L=74]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 572.85
//
Query:       CTQ28218.1  [L=255]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-19   68.9   0.1    9.5e-19   67.5   0.1    1.7  1  HTH_18        Helix-turn-helix domain
    1.7e-09   37.5   0.4    0.00023   21.2   0.3    2.3  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
    3.9e-09   36.5   0.1    6.1e-09   35.9   0.1    1.4  1  AraC_binding  AraC-like ligand binding domain
     0.0001   21.9   0.1    0.00018   21.2   0.1    1.4  1  Cupin_2       Cupin domain


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.1   2.1e-22   9.5e-19       1      78 [.     177     252 ..     177     254 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 2.1e-22
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPsey 78 
                 +a+al +s++t++r+f ++lgl+++++++r  +  A + L+  +g++v e+Al lG++++s+F+++fr+++g++Ps y
  CTQ28218.1 177 WARALFMSPSTFRRHFLKQLGLSFSAWRQRACVVSALAWLI--AGKPVNEVALSLGYDNASSFATMFRRVTGQPPSFY 252
                 79**************************************9..5*******************************977 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.3   5.1e-08   0.00023      15      42 .]     178     205 ..     176     205 .. 0.91
   2 !   14.2   0.0     8e-06     0.036      10      35 ..     221     247 ..     217     252 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.1e-08
                 HHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  15 AdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 A +l +S+s+F+r F k++G ++s++r+
  CTQ28218.1 178 ARALFMSPSTFRRHFLKQLGLSFSAWRQ 205
                 566777*********************7 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 8e-06
                 -HHHHHHHTTS.SHHHHHHHHHHHSSS CS
    HTH_AraC  10 tiediAdelgf.SrsyFsrlFkketGm 35 
                  ++++A  lg+ + s F + F+++tG+
  CTQ28218.1 221 PVNEVALSLGYdNASSFATMFRRVTGQ 247
                 799***********************8 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   1.4e-12   6.1e-09      16     115 ..      29     114 ..      16     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 1.4e-12
                   EEEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG---EEETTEEE..E---TTTHHHHHH CS
  AraC_binding  16 fpphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegelleriledssilagapllpalledeelaqllra 112
                    pph+h  +++ y + G  +++ +++++ ++p + +++pp+++H  + ++    ++r+ly+e++ ++++ +     ++       +e ++++ llr+
    CTQ28218.1  29 LPPHQHRRAQLLYGATGLMYVTTQDGEWVVPPQHAVWIPPETVHAVRFAG---VTTRSLYIEPDCVAAFIK-----HR------RCEVISVSPLLRQ 111
                   49***********************************************9...9*********99998855.....23......5677777777777 PP

                   HHH CS
  AraC_binding 113 lfr 115
                   l+ 
    CTQ28218.1 112 LLL 114
                   765 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1     4e-08   0.00018      10      61 ..      28      78 ..      22      86 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4e-08
                EEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-S CS
     Cupin_2 10 sapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtg 61
                  p+h H+++ +++y   G + +t  + e+++ +  +v +p+ t H++r +g
  CTQ28218.1 28 ILPPHQHRRA-QLLYGATGLMYVTTQDGEWVVPPQHAVWIPPETVHAVRFAG 78
                679*******.*************77777*******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2088.11
//
Query:       CTQ28219.1  [L=263]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-33  116.4  39.4    1.9e-33  116.0  39.4    1.0  1  TauE             Sulfite exporter TauE/SafE
  ------ inclusion threshold ------
        4.3    7.1  12.3       0.51   10.1   1.2    3.2  3  DUF5353          Family of unknown function (DUF5353)


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0  39.4   2.2e-37   1.9e-33       1     236 []       7     260 ..       7     260 .. 0.92

  Alignments for each domain:
  == domain 1  score: 116.0 bits;  conditional E-value: 2.2e-37
        TauE   1 lllagllaGfvagllGiGggliavPlLllll.........ppavavatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpse 90 
                 ++lag+ +G+   l+G+Ggg+++vP+ + l+         +++vavats++++++++ + +++++r g++  ++l +ll +++iGa++G+ l+  l+++
  CTQ28219.1   7 IALAGFTTGITTVLFGFGGGFVVVPFVYQLMlrqpaiagnAMHVAVATSTAVMIFNAGWVSYRNWRAGRLTAQTLFPLLWFIAIGAVVGSCLAGILSEK 105
                 589**********************777653489999************************************************************** PP

        TauE  91 llkllfgvlllllallmllrkkrsrakgrerrptaillvliggl.vGllsGllGiGgGfllvpllllllglplkkavatslllilvislagalgyal.. 186
                 ++++lf +++l+++   llrk+  +++ ++rr +++ +v  gg+ +G +++llG+Gg +++vpll    g+ +++ v +s+ l+l+++l ga++ya+  
  CTQ28219.1 106 IVRVLFILYMLATISDCLLRKGFFTGS-ARRRLSLP-VVTGGGViIGTIAALLGVGGSVMTVPLLRR-HGYAMQECVSASNPLSLPVALCGAVTYAVig 201
                 *******************99987777.45555555.44555566*******************997.9**************************7777 PP

        TauE 187 .........agavdwpllllllpgallGallGarlarrlsertlrrlfallllvlgvkl 236
                          +g +++++l+ll++++++G+++  r+   +++ +  r+++lll+++ + +
  CTQ28219.1 202 whsiplsgfLGFISLKILGLLVLTGWAGIVFSRRAIPAVPDVWYARIYVLLLCLVLLAM 260
                 8888999999******************************************9998866 PP

>> DUF5353  Family of unknown function (DUF5353)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.2   5.6e-05      0.51       5      49 ..      41      93 ..      39     103 .. 0.69
   2 ?    3.0   1.2    0.0097        87       5      24 ..     140     159 ..     137     161 .. 0.93
   3 ?   -2.0   0.1      0.35   3.2e+03       5      23 ..     184     202 ..     181     205 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 5.6e-05
     DUF5353  5 pvvvgNavlvavl..sagL....GfgAYrkyarGeLtwkvvg..lwagavGaf 49
                p ++gNa+ vav+  +a++    G+  Yr + +G+Lt +++   lw  a+Ga+
  CTQ28219.1 41 PAIAGNAMHVAVAtsTAVMifnaGWVSYRNWRAGRLTAQTLFplLWFIAIGAV 93
                788999987776521455534446667***********987522555555554 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0097
     DUF5353   5 pvvvgNavlvavlsagLGfg 24 
                 pvv g  v+++ ++a+LG+g
  CTQ28219.1 140 PVVTGGGVIIGTIAALLGVG 159
                 9*****************98 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.35
     DUF5353   5 pvvvgNavlvavlsagLGf 23 
                 p+ +  a+  av+ a++G+
  CTQ28219.1 184 PLSLPVALCGAVTYAVIGW 202
                 5555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       865  (0.0482459); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2263.26
//
Query:       CTQ28220.1  [L=310]
Description: allantoinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-10   39.2   0.2    2.4e-09   37.1   0.0    2.1  2  Polysacc_deac_1  Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.11     2e+03      97     108 ..      18      29 ..      11      35 .. 0.82
   2 !   37.1   0.0   1.3e-13   2.4e-09      14     118 ..      78     180 ..      70     187 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.11
                      ---EEE-GGGEE CS
  Polysacc_deac_1  97 eprlfryPygsa 108
                      ep + r+P+g++
       CTQ28220.1  18 EPPHARWPGGAR 29 
                      7899*****986 PP

  == domain 2  score: 37.1 bits;  conditional E-value: 1.3e-13
                      EESSCSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHHHS----EEE-GGGE CS
  Polysacc_deac_1  14 DdgprdntteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhsnlkrlseeevrreierakdalrkalgreprlfryPygs 107
                      + g+r +  +i+  + + +++ t+f +    +++p++v +++a+  ++ +H++ + +++ +  +e+r+++++a+++l + +g++p+ +    g+
       CTQ28220.1  78 EYGSRAGFWRIHREFSQRGLPLTVFGVAMALARHPEIVAAIKAADYDVVSHGWRWIHYQHMDIAEEREHLQKAVQVLTDLFGKPPTGWYT--GR 169
                      557788999999999********************************************************************9999753..44 PP

                      E-HHHHHHHHH CS
  Polysacc_deac_1 108 asatvlevare 118
                       s ++++ + e
       CTQ28220.1 170 DSPNTRQLVVE 180
                      44555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2362.51
//
Query:       CTQ28221.1  [L=247]
Description: hydantoin-racemase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-11   42.4   0.8    8.7e-11   42.1   0.8    1.1  1  Asp_Glu_race   Asp/Glu/Hydantoin racemase
    1.9e-05   24.4   0.5    1.9e-05   24.4   0.5    1.7  2  Amdase         Arylmalonate decarboxylase
  ------ inclusion threshold ------
       0.11   12.3   1.2        0.2   11.4   0.1    2.0  2  PEP-utilizers  PEP-utilising enzyme, mobile domain


Domain annotation for each model (and alignments):
>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.8   1.5e-14   8.7e-11       3     221 ..       8     211 ..       6     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 1.5e-14
                   ECSCCCCHHHHHHHHHHBTTSSGGGS..EEEEE-CCS-TCHHHHHCH.T..THH.HHHHHHHHHHCTTESEEEE--CHHHHHHHHHHHH-SSEEEEC CS
  Asp_Glu_race   3 gmgpeatlsvlrklveatpaesdqehlplivlndsaipdrteaieeesgddpvl.klleaakkLekagadaiviaCnTahavadelqkkikiPvlgi 98 
                   +++p+ +l++++ + +a++a        l v+  + +p +  +     ++ +++   le +++  ++g+d  viaC+     + + ++ ++ Pv+gi
    CTQ28221.1   8 VINPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPSIEGHF----DEAIAAvGVLEQIRAGREQGVDGHVIACFGD-PGLLAARELAQGPVIGI 99 
                   78899999999999999999998754444444444499777777....34456669***********************.****************8 PP

                   HHHHHHHHHHHSS-EEEEEE-HHHHHCTHHHHHHHHHGT.EEE....T-CCCHHCCHC.HHHH..TT-TTSHHHHHHHHHHHHHHTTT-SEEEE-ST CS
  Asp_Glu_race  99 veataealkatgvkkvglLgTrgtlksglyqkeleanqgievvvpseelqssvnqaiy.eelk..aGevteearrailkllerlaergadaviLGCT 192
                   +ea+++ +    + ++ +++ +   +  + ++ l++ +g+       +++  ++ ai+   +   ++    ++++  + ++++l+e+g  a++LGC 
    CTQ28221.1 100 AEAAMHMA-TMVATRFSIVT-TLPRTLIIARHLLHQ-YGF------HQHCAALH-AIDlP-VLalEDGSGLAQEKVRERCIRALKEDGSGAIVLGCG 185
                   88888766.55788899988.578888899999999.599......66666775.99953.444555555556666666666666************ PP

                   THHHHHHHHHHCC-TT.SEEEEHHHHHHH CS
  Asp_Glu_race 193 elplllekaealekeksvpvidptdilar 221
                    + +l +++++      vpvid +++ ++
    CTQ28221.1 186 GMATLAQELTRE---LRVPVIDGVSAAVK 211
                   ***998888444...469*******9997 PP

>> Amdase  Arylmalonate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.56   3.4e+03      31      52 ..      16      37 ..       6      39 .. 0.61
   2 !   24.4   0.5   3.2e-09   1.9e-05      98     216 ..     111     229 ..      85     230 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.56
      Amdase 31 evidrvveaArelaerGaqavs 52
                ++ + + +aAr+ a+ G+++++
  CTQ28221.1 16 AMTETIGAAARAVAAPGTEILA 37
                4556677777777777766655 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 3.2e-09
      Amdase  98 arRvAvataYidev...nerLvayLeesglevaalesLdiedveavakvtaeelvelgkkavaaapeadallisCGGLrtldvvreledelglpvvssa 193
                 a R  ++t+   ++    + L +y  ++  ++ +   L + ++e+ + +++e++ e + +a+++++ + a+++ CGG+ tl+  +el +el++pv+   
  CTQ28221.1 111 ATRFSIVTTLPRTLiiaRHLLHQYGFHQHCAALHAIDLPVLALEDGSGLAQEKVRERCIRALKEDG-SGAIVLGCGGMATLA--QELTRELRVPVIDGV 206
                 455555555554441112345556556666666677788999********************7765.689********9975..89***********99 PP

      Amdase 194 lAGlwdavrlagldaraagegrl 216
                  A +  + +l+ l  +++ +g l
  CTQ28221.1 207 SAAVKMVESLVALGLATSKHGDL 229
                 99999998888888888888765 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.77   4.6e+03      43      57 ..      89     103 ..      83     116 .. 0.54
   2 ?   11.4   0.1   3.4e-05       0.2      20      60 ..     171     212 ..     153     230 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.77
                    HHTT--EEE--SSHH CS
  PEP-utilizers  43 relgiPaVvgvgeat 57 
                    rel    V+g+ ea 
     CTQ28221.1  89 RELAQGPVIGIAEAA 103
                    444444444444433 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.4e-05
                    TS-..GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.HH CS
  PEP-utilizers  20 gld..kaaGivterGGmtSHaAivArelgiPaVvgvgeatiel 60 
                    +l+     +iv   GGm   a  + rel +P++ gv++a + +
     CTQ28221.1 171 ALKedGSGAIVLGCGGMATLAQELTRELRVPVIDGVSAAVK-M 212
                    555557899*****************************984.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1864.61
//
Query:       CTQ28222.1  [L=238]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-16   60.9   3.7    1.5e-16   60.9   3.7    1.8  2  FCD             FCD domain
    2.9e-16   58.9   0.1    6.5e-16   57.7   0.1    1.6  1  GntR            Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
      0.019   14.9   0.0      0.037   14.0   0.0    1.5  1  HTH_11          HTH domain
       0.13   12.1   0.0       0.19   11.6   0.0    1.4  1  TFIIE_alpha     TFIIE alpha subunit
       0.17   12.1   0.1        1.7    8.9   0.0    2.2  2  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.95   3.4e+03     102     124 ..       8      30 ..       2      31 .. 0.67
   2 !   60.9   3.7   4.3e-20   1.5e-16       2     124 ..      89     210 ..      88     211 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.95
         FCD 102 aildAirardadaAraamrrHle 124
                 + + A+ ++d+   +a+m++ +e
  CTQ28222.1   8 QAAPALQDKDESIYQALMTAIVE 30 
                 45567888888888888887665 PP

  == domain 2  score: 60.9 bits;  conditional E-value: 4.3e-20
         FCD   2 lyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlalssperleeslaeH 100
                 ++ +RalLE++ +  ++ r+++ +la+le+++++ ++a a++d  +++++ ++FH  l +++gnpvl+e++++l++r   +++  + +p r    +++H
  CTQ28222.1  89 IFRTRALLEVANLPDVIARCQPPHLAALENIIQREQQAHAAHDGPAAIRHSADFHIQLQAISGNPVLTEMVTRLSQRSSLVIAA-WGAPWRQGCRCDDH 186
                 899****************************************************************************87765.569*********** PP

         FCD 101 raildAirardadaAraamrrHle 124
                 ++++  +r++  +   +a+ +H++
  CTQ28222.1 187 QQLIGLLRDKALQPLSEALMHHFD 210
                 **********************97 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.1   1.8e-19   6.5e-16       3      64 .]      18      78 ..      16      78 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 1.8e-19
                HHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  3 eqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                e +y++L   I++ +l pG+kL +e++La+ f+Vsrt +R++L+rL+a +lv+  ++rG++V
  CTQ28222.1 18 ESIYQALMTAIVEHQLPPGSKL-PEEALAEVFAVSRTGIRKVLQRLAAVQLVTLTPKRGAHV 78
                78********************.9***********************************998 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     1e-05     0.037      19      52 ..      42      74 ..      36      77 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1e-05
      HTH_11 19 eeLAeeLnvSrrtvrrdIkaLeelgvpIesepgr 52
                e LAe + vSr+ +r+ +++L +    ++ +p+r
  CTQ28222.1 42 EALAEVFAVSRTGIRKVLQRLAAVQ-LVTLTPKR 74
                78*******************8876.55555555 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.2e-05      0.19      26      63 ..      37      74 ..      17     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.2e-05
                 TSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEEEEE CS
  TFIIE_alpha 26 gevteedlakelkidlnelrklLnrLyearlvkykrrr 63
                 +++ ee la+   + ++ +rk+L rL   +lv    +r
   CTQ28222.1 37 SKLPEEALAEVFAVSRTGIRKVLQRLAAVQLVTLTPKR 74
                 7899***************************9887666 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00049       1.7      26      60 .]      42      76 ..      36      76 .. 0.93
   2 ?    0.5   0.0       0.2   7.2e+02      40      48 ..     156     164 ..     151     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00049
                    HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTTEE CS
  Fe_dep_repress 26 kdlaerLnvspssVsemlkkLekdGyveyekykgl 60
                      lae+ +vs   + + l++L+   +v   +++g+
      CTQ28222.1 42 EALAEVFAVSRTGIRKVLQRLAAVQLVTLTPKRGA 76
                    579******************************97 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.2
                     HHHHHHHHH CS
  Fe_dep_repress  40 semlkkLek 48 
                     +em+ +L++
      CTQ28222.1 156 TEMVTRLSQ 164
                     9******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1917.15
//
Query:       CTQ28223.1  [L=498]
Description: putative permease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-84  284.3  34.2    1.8e-84  284.0  34.2    1.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
     0.0043   16.8   7.5       0.13   12.1   0.0    4.3  5  DUF2976         Protein of unknown function (DUF2976)
  ------ inclusion threshold ------
      0.088   12.5   4.7       0.43   10.3   1.3    2.9  2  PRD1_DD         PRD1 phage membrane DNA delivery


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.0  34.2   3.1e-88   1.8e-84       5     440 .]      32     465 ..      29     465 .. 0.96

  Alignments for each domain:
  == domain 1  score: 284.0 bits;  conditional E-value: 3.1e-88
  Transp_cyt_pur   5 eeRtwktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvviaiv 99 
                         w+++n+fs+W++++++   +v++a++++lgL  wq++l+ +vg  i+     l ++ ++  G+p +++ R  fG++g+++p+++r++ia  
      CTQ28223.1  32 RDQNWSWYNIFSFWMSDVHSMGGYVVAASFFTLGLASWQVLLCLLVGICIVQLCANLVAKPSQMAGVPYAVICRQAFGVFGANIPAVIRGLIAFA 126
                     5678******************************************************************************************* PP

  Transp_cyt_pur 100 wfgvqawiGsealllmlgkifgk.wleigg.ailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaeg.Gpvl 191
                     w+g+q++++++al l+l k +++    +    +lg+s  ++++f+  w++++++ ++g+++i++f  ia ++v+v+  +++ w++ k+++ G  +
      CTQ28223.1 127 WYGIQTYLAANALMLVLLKFWPSlA-SLTSsSFLGLSPLGWLCFATMWLLQAMVFWHGMNAIKRFIDIAGPAVYVVMLALAGWIVYKTGLdGISF 220
                     **********************963.444449**********************************************************97666 PP

  Transp_cyt_pur 192 dkavklg.kse...lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdeta 282
                       a+k+  + e    +++a a+v++ f+   ln +DF+ry+k+  +  ++   ++p+ f l++++ +++++++++++g+ + +p + + ++ + +
      CTQ28223.1 221 TLASKSLsAGEqtwQMITATALVVSYFSGPLLNFGDFSRYGKSMGEIRRGNRWGLPFNFLLFSVVTVVIVSGTQSLFGKMITDPIETVSRVGNDL 315
                     555544435557889******************************************************************************** PP

  Transp_cyt_pur 283 gvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllssssklftaflsllavflspvagviiadyfvvrrgy 377
                     +v++ l+++  a++g+ni an +s+++d+++ +P+ki++++g +iaav +++ +pw+l +s +  +   l++l++f++p  g++iad++ ++rg+
      CTQ28223.1 316 AVAIGLLTMITATIGINIVANFVSPAFDFSNCAPQKISFRTGGMIAAVGSILLTPWNLFNSPEL-IHYTLDVLGAFIGPLFGILIADFYLIKRGR 409
                     ***************************************************************9.8889************************** PP

  Transp_cyt_pur 378 lklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvgikvvkgaeklfdlsylvG 440
                     +++++l+++ +++ Ywyr+g+N++a+aa + ++ +gl+        ++++ + ++++ s+++G
      CTQ28223.1 410 VSVDDLFDDTPQGKYWYRNGFNPKAIAALLPSVGLGLII-------SFIPTLHEVANFSWFIG 465
                     ******************************999999999.......99**************9 PP

>> DUF2976  Protein of unknown function (DUF2976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0036        22       6      40 ..      29      62 ..      27      68 .. 0.90
   2 ?    0.7   0.3     0.077   4.6e+02      64      85 ..      71      92 ..      65      95 .. 0.79
   3 ?   -2.9   0.1         1   6.1e+03      33      54 ..     172     193 ..     167     203 .. 0.69
   4 ?   -2.4   0.2      0.69   4.1e+03      53      68 ..     226     241 ..     184     245 .. 0.56
   5 !   12.1   0.0   2.2e-05      0.13      13      75 ..     301     368 ..     292     372 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0036
     DUF2976  6 aPssgekggdllelikgylkdgvillgLvlaavaf 40
                aP++++ + ++ ++++ ++ d+  ++g v+aa  f
  CTQ28223.1 29 APTRDQ-NWSWYNIFSFWMSDVHSMGGYVVAASFF 62
                699999.99********************998766 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.077
     DUF2976 64 fgltlvvGvvllvvviwLltkA 85
                + l l+vG++++ ++  L++k 
  CTQ28223.1 71 VLLCLLVGICIVQLCANLVAKP 92
                557889*********9999875 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1
     DUF2976  33 LvlaavaflaVakaalkkfnei 54 
                 + l  +++++   +a+k+f +i
  CTQ28223.1 172 MWLLQAMVFWHGMNAIKRFIDI 193
                 4455667777777777777665 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.69
     DUF2976  53 eisegkaewgkfgltl 68 
                   s g ++w  + +t+
  CTQ28223.1 226 SLSAGEQTWQMITATA 241
                 3355666666666555 PP

  == domain 5  score: 12.1 bits;  conditional E-value: 2.2e-05
     DUF2976  13 ggdllelikgylkdgvillgLvl...aavaflaVakaalk..kfneisegkaewgkfgltlvvGvvll 75 
                  +d++e+++ +++d+++ +gL+    a++++  Va+ +     f+++  +k +++  g++++vG +ll
  CTQ28223.1 301 ITDPIETVSRVGNDLAVAIGLLTmitATIGINIVANFVSPafDFSNCAPQKISFRTGGMIAAVGSILL 368
                 5799*************99997511145555555555443236899********************98 PP

>> PRD1_DD  PRD1 phage membrane DNA delivery
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.03   1.8e+02      11      34 ..      75      98 ..      70     103 .. 0.78
   2 ?   10.3   1.3   7.1e-05      0.43       8      27 ..     321     340 ..     316     367 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.03
     PRD1_DD 11 vltAiiGvAilAvlvsrrsntAGv 34
                +l  i  v + A lv++ s  AGv
  CTQ28223.1 75 LLVGICIVQLCANLVAKPSQMAGV 98
                5556666777899**********9 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 7.1e-05
     PRD1_DD   8 lvtvltAiiGvAilAvlvsr 27 
                 l+t++tA iG+ i+A  vs 
  CTQ28223.1 321 LLTMITATIGINIVANFVSP 340
                 89****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3957.30
//
Query:       CTQ28224.1  [L=436]
Description: guanine deaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-68  229.8   0.0    6.3e-68  229.6   0.0    1.0  1  Amidohydro_1  Amidohydrolase family
    2.9e-17   63.3   0.1    4.8e-10   39.5   0.0    2.2  2  Amidohydro_3  Amidohydrolase family
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.16   11.4   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.6   0.0   1.1e-71   6.3e-68       2     344 .]      71     432 ..      70     432 .. 0.94

  Alignments for each domain:
  == domain 1  score: 229.6 bits;  conditional E-value: 1.1e-71
                   EEE-EEEEEEECETTECSSS...GHHHHH...........STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEESS CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrga...tledwl...........vppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilggkv 84 
                   +lPG++D+H+H++q+++ ga   +l++wl           ++ ++a+e ++ ++ +++++Gttt++ + + ++ ++eal+ +a +l  ++r+++gkv
    CTQ28224.1  71 LLPGFVDTHIHYPQTEMIGAfgeQLLEWLttytfpvesqfADADYAQEIAQFFVNQLISHGTTTALVFCTLHPASVEALFSEALRL--NMRLIAGKV 165
                   89*********************************************************************999*******99997..********* PP

                   EGGS....GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHH.TTEEEEEETSSCHHHHHHHHHHTTTEEEETTT CS
  Amidohydro_1  85 sldr....gsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkr.dlpvaiHaletkgevedaeaafgetiehgthl 176
                   ++dr    +  et  +s+e+ +a ++++   + +g++  a++p++ap+ ++ +l+++ ++ ++  d+++++H++e+++e++++++  +   eh+ +l
    CTQ28224.1 166 MMDRhvpdYLCETAGESYEQTRALIRRW---HQRGRLGYAITPRFAPTSTPGLLEAVQRLRAEFpDTWLQTHLSENREEIAWVKQLWP---EHARYL 256
                   ********66667777777776666333...3589999********************9777777***********************...****** PP

                   TSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHHHHHHCCT CS
  Amidohydro_1 177 evaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvkvglgtDgaasgnslnlleelrlalklqrglly 273
                   +v++ ++l +e + ++ahg+hl+++e+  l+    ++ va cp+sn+ l+sg+++l  +++  v++g+g+D +++g ++++l++l  a+k+ +++ y
    CTQ28224.1 257 DVYHHYQLTGE-RSVFAHGIHLDDAEWQCLHDT--GSAVAFCPTSNLFLGSGLFRLPACWQHQVRMGIGSD-VGAGTTFSMLRTLGEAYKVGQLQSY 349
                   ***********.*********************..************************************.*****************88885555 PP

                   TTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC..CT...............CGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 274 edeegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl..di...............laafvglkkdgnvkkvivkGklv 344
                         l+++ea++ aT++gA+al+l++k+G +++Gk+AD+vv+d+  ++               l  ++ l + +n+  ++v+G+ v
    CTQ28224.1 350 -----RLRASEAFYHATLGGARALRLEEKIGNFQPGKEADFVVIDPavTPlqrlrigrchdiyeqLFVLMTLGDERNISETWVNGERV 432
                   .....5****************************************884467888999999999999999***************876 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   1.9e-08   0.00011       3      20 ..      64      81 ..      62      91 .. 0.90
   2 !   39.5   0.0     8e-14   4.8e-10     355     472 ..     304     432 ..     256     433 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.9e-08
  Amidohydro_3  3 iDakGrlvlPGFvDsHtH 20
                  +D++G+l+lPGFvD H+H
    CTQ28224.1 64 VDLRGKLLLPGFVDTHIH 81
                  8***************** PP

  == domain 2  score: 39.5 bits;  conditional E-value: 8e-14
  Amidohydro_3 355 rgstpvkellnagvkvalgsD.apvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvld.... 446
                   +g++++ + +++ v++  gsD   +++f  + ++g a    ++++      + +l   ea+ + T g+A+al+le++ G+ ++G++AD+vv+d    
    CTQ28224.1 304 SGLFRLPACWQHQVRMGIGSDvGAGTTFSMLRTLGEAY---KVGQL----QSYRLRASEAFYHATLGGARALRLEEKIGNFQPGKEADFVVIDpavt 393
                   45688999999**********66666666666666666...55554....889999*************************************7776 PP

  Amidohydro_3 447 .adpldvdppelaear............vrltvvdGrvv 472
                     ++l++   ++ +++            +++t+v+G+ v
    CTQ28224.1 394 pLQRLRIGRCHDIYEQlfvlmtlgdernISETWVNGERV 432
                   65556665555555558*******************987 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.6e-05      0.16      43     122 ..     117     199 ..     103     243 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.6e-05
                   HHHH.HHHHHHHHTT-.SEEEEE-S-GG.HHHHHHHHHH.T-EEEEESS--B-TTTS-EEEE-HHHHHHHHHHHHHHHHHHHT.G CS
  Peripla_BP_1  43 edla.kaidllkakgi.dgliiatsdts.fdditakaes.gipvialedaidapdgvPcvipddtqageestqkLiaeghkrp.i 122
                   +++a   +++l ++g   +l+ +t+ +  ++++   a   ++  ia +  +d    vP ++ +     +e+t+ Li++ h+r+  
    CTQ28224.1 117 QEIAqFFVNQLISHGTtTALVFCTLHPAsVEALFSEALRlNMRLIAGKVMMDRH--VPDYLCETAGESYEQTRALIRRWHQRGrL 199
                   4555334567777775269******99978999999988899999988887777..*******99999**************852 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3399.59
//
Query:       CTQ28225.1  [L=418]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-36  124.6   0.0    4.7e-36  124.0   0.0    1.3  1  GGDEF     Diguanylate cyclase, GGDEF domain
    4.9e-09   36.4   0.0      3e-07   30.7   0.0    2.4  2  PAS_4     PAS fold
    3.4e-08   33.3   0.0      0.011   15.7   0.0    2.5  2  PAS_8     PAS domain
    2.4e-06   27.7   0.0    0.00024   21.3   0.0    2.5  2  PAS_9     PAS domain
    4.6e-05   23.4   0.0      0.054   13.5   0.0    3.2  3  PAS       PAS fold


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   0.0   1.3e-39   4.7e-36       1     161 []     253     399 ..     253     399 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.0 bits;  conditional E-value: 1.3e-39
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 aahD+lTgL NRr + + +e      r     + +ll+d+d+Fk+ind +Gh+ GDevL  ++++L++s+ ++d ++R+gg+eF++ lp+ +  +a  l
  CTQ28225.1 253 AAHDPLTGLLNRREFHRLVEAPTFIPR----GYCLLLIDIDHFKSINDIHGHQKGDEVLLVLSRILETSVDREDKIYRWGGEEFLLFLPHSPIGRALIL 347
                 78*************999988887774....4788*********************************************************9999999 PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSSC CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrnr 161
                 ae ir+++++ ++        l vt+siG+a  +  +ge++++l++++d+aly+aK++grnr
  CTQ28225.1 348 AEGIRQAVSEYQT--------LSVTVSIGVAEHH--DGETVDQLFSRVDKALYAAKNDGRNR 399
                 9999999998887........569*********6..************************97 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.026        94      14      29 ..      23      38 ..       9      75 .. 0.85
   2 !   30.7   0.0   8.4e-11     3e-07      13     109 ..     149     243 ..     139     244 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.026
       PAS_4 14 dgrvlyaNaaaaelfg 29
                + rv+yaN+a++ l g
  CTQ28225.1 23 NERVVYANQASRTLSG 38
                569*******999655 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 8.4e-11
       PAS_4  13 pdgrvlyaNaaaaelfgappeellGktlaellpee.daarleralrrvlegeepiefleelllpgeerhyelrllPlrdesGevigvlvisrDiTerr 109
                 +dgr+++aN aa + +++++ee++ k+ +++ + + d  +++++++ +  g++p+ f+++l + g+ rh+++ + P+      ++  l+i++DiTe++
  CTQ28225.1 149 KDGRIVDANIAALRFYHYSDEEMRTKHTWQINTLGrDVIPIMNNIASLPGGHKPLNFTHILAD-GSLRHVQTYAGPV--VLYNIRLMLCIIHDITEEV 243
                 69***************************96555569999*******************9999.**********999..667799***********86 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.3e-06     0.019       5      37 ..       7      39 ..       4      67 .. 0.80
   2 !   15.7   0.0   3.1e-06     0.011       3      43 ..     131     174 ..     129     192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.3e-06
       PAS_8  5 alfesspdgiavvdlgd.rivdvNqaalellGys 37
                a+fe ++ +i+vv   + r+v++Nqa   l G +
  CTQ28225.1  7 AVFEVLSTPIWVVHPFNeRVVYANQASRTLSG-E 39
                69**********9833357*******999999.3 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 3.1e-06
       PAS_8   3 lralfesspdgiavvd..lgdrivdvNqaalellGys.adlkge 43 
                 +  +f +   +++++d   ++rivd+N aal++++ys ++++++
  CTQ28225.1 131 FARFFMTNTAPMLLIDphKDGRIVDANIAALRFYHYSdEEMRTK 174
                 66778888999*****987778***************7666654 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.019        67      10      34 ..      23      48 ..      13      97 .. 0.65
   2 !   21.3   0.0   6.8e-08   0.00024       6     104 .]     145     241 ..     140     241 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.019
       PAS_9 10 dgrilyaNeaalrllG.yspeevlgk 34
                + r++yaN+a ++l G +s +e+ + 
  CTQ28225.1 23 NERVVYANQASRTLSGeMSLNEMRNG 48
                44899***********9988886553 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 6.8e-08
       PAS_9   6 i.dnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrkkerevevvlirkngetfwvlltaspvkdddgelvgiivilrDit 103
                 i  ++dgri++aN aalr++ ys ee+  k+ +++  t  ++   + + + ++    +  + ++i  +g+  +v+  a pv   + +l++  +i++Dit
  CTQ28225.1 145 IdPHKDGRIVDANIAALRFYHYSDEEMRTKHTWQIN-TLGRDVIPIMNNIASLPGGHKPLNFTHILADGSLRHVQTYAGPVVLYNIRLML--CIIHDIT 240
                 466799*****************************9.999999999999999987788888899999**************866656666..******* PP

       PAS_9 104 e 104
                 e
  CTQ28225.1 241 E 241
                 8 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.017        62       7      35 ..       9      38 ..       6      82 .. 0.84
   2 !   13.5   0.0   1.5e-05     0.054       3      43 ..     131     173 ..     129     180 .. 0.88
   3 ?    2.4   0.0     0.043   1.5e+02      82     113 .]     210     239 ..     193     239 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.017
                HHHSSSEEEEEE.TTSBEEEECHHHHHHHS CS
         PAS  7 leslpdpifvvD.edgrilyvNaaaeellG 35
                +e l +pi+vv   + r++y+N+a ++l G
  CTQ28225.1  9 FEVLSTPIWVVHpFNERVVYANQASRTLSG 38
                5668899****9899*********999987 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.5e-05
                 HHHHHHHSSSEEEEEE..TTSBEEEECHHHHHHHSSTHHHCTT CS
         PAS   3 lraileslpdpifvvD..edgrilyvNaaaeellGlsreevlg 43 
                 + +++ + ++p++++D  +dgri+ +N aa ++ ++s ee+  
  CTQ28225.1 131 FARFFMTNTAPMLLIDphKDGRIVDANIAALRFYHYSDEEMRT 173
                 6677778899*****************************9865 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.043
                 TTSSEEEEEEEEEEEEETTEEEEEEEEEEEES CS
         PAS  82 rdgrpihlevraspvrdaggeilgflgvlrdi 113
                  dg+ +h+++ a pv+    +i+  l++++di
  CTQ28225.1 210 ADGSLRHVQTYAGPVVLY--NIRLMLCIIHDI 239
                 59****************..7889*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3147.30
//
Query:       CTQ28226.1  [L=346]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-20   73.5   0.0    2.7e-20   73.0   0.0    1.2  1  Peripla_BP_4  Periplasmic binding protein domain
    1.7e-11   43.7   0.6    3.5e-11   42.7   0.6    1.6  1  LacI          Bacterial regulatory proteins, lacI family
  ------ inclusion threshold ------
      0.067   12.3   0.0       0.11   11.6   0.0    1.3  1  ANF_receptor  Receptor family ligand binding region
       0.75   10.2   6.5       0.18   12.2   1.1    2.7  3  HTH_31        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0     6e-24   2.7e-20      42     254 ..     115     324 ..      75     327 .. 0.90

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 6e-24
                   HHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHH CS
  Peripla_BP_4  42 aeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpna 138
                   ++++++i  + +  v ++ + + d++ +++a+++a+a+G+ V++  sd      r+ y+g dn++aG+++a  + + + g+ g++ i+ G+   + +
    CTQ28226.1 115 EAMAQAIHRL-SDEVEVLGLVALDHPLIRHAVARAAARGVRVFTLLSD-LSVPQRSGYIGLDNHKAGRTAAWFIERLCRGN-GEIGIIIGDNRFTCQ 208
                   4555555555.55699********************************.88899999************************.*************** PP

                   HHHHHHHHHHHHH-T.TCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSCCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEE CS
  Peripla_BP_4 139 eeriegfrkvlkeyp.gikivaevaganwdaekaqqalealltanp.ldgilaandgmaegalealeaaglagkvvvtgqDatpealeaikdGtida 233
                   e  +  fr+ l+e + g +i++  +   + a+ a++ +e++lt++p l++i+a+++g   g+++al+++g++ +++++ ++  + +  a+ dGtid 
    CTQ28226.1 209 ESCEISFRSCLREQGkGQQILE-PVRSHERADIARTVTEQMLTQYPaLQAIYAPCGGVE-GIVDALRDSGRQQEIALVCHGPLSDSELALIDGTIDI 303
                   *************665999997.55659***************9977*******77775.5********************9999999999*****8 PP

                   EEE--HHHHHHHHHHHHHHHH CS
  Peripla_BP_4 234 tvaqdpyelgyaavelavall 254
                   +      e ++++++++++++
    CTQ28226.1 304 MLNHRLDEFAAVTLRAMADAA 324
                   888888888888888888765 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.6   7.7e-15   3.5e-11       1      44 [.       9      52 ..       9      54 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 7.7e-15
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB- CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYi 44
                t+ D+Ar+A V +aTV rvLn++  V+e+t+ rV++a++ l+++
  CTQ28226.1  9 TLADIAREARVGVATVDRVLNKRAAVKESTARRVLEAARRLGFT 52
                899**************************************986 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.5e-05      0.11     185     294 ..      35     125 ..       2     164 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.5e-05
                   -HHHHHHHHHHHHHTTS-STTEEEEETCHCCCECTTS-CC..HHHHHTT-EEEEE--B-HHHHHHHHH.ST--CCCSSSTCCGSTTCCHHHHH...H CS
  ANF_receptor 185 ssedarellkaarrlgltgeeyvwiasdawtsslvldkpeltgleaaegvlgfrlkdpnspkfsefld.kreklsdekqnyenegkeqisyqaalmY 280
                    +++ar++l+aarrlg+t e+ ++                   l a ++ +++r+     ++ ++f++   + l++e ++   +g+ ++  ++   +
    CTQ28226.1  35 KESTARRVLEAARRLGFTLEQPHYR------------------LAAGKAPVTIRMGFILLQESHSFYLpLARALTREAAPWLPAGQAPVILHF--AI 111
                   349****************999998..................4456666666664444444444444435888889999999****988888..49 PP

                   HHHHHHHHHHHHHH CS
  ANF_receptor 281 daVyllaeAlnkll 294
                   daV ++a+A+++l 
    CTQ28226.1 112 DAVEAMAQAIHRLS 125
                   ************97 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.1   3.9e-05      0.18      15      53 ..       8      45 ..       4      55 .. 0.87
   2 ?   -1.5   0.0      0.73   3.3e+03      45      61 ..     112     128 ..     101     131 .. 0.71
   3 ?   -3.9   0.1         4   1.8e+04      16      24 ..     316     324 ..     313     330 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.9e-05
      HTH_31 15 LsqeevAerlgvsestlsrlEqGrrgrpspavlealara 53
                +++++ A+ ++v ++t+ r+ + r   +++++ +++++a
  CTQ28226.1  8 ITLADIAREARVGVATVDRVLNKRA-AVKESTARRVLEA 45
                799**********************.5*99999888887 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.73
      HTH_31  45 avlealaralgldpaer 61 
                 +++ea+a+a     +e+
  CTQ28226.1 112 DAVEAMAQAIHRLSDEV 128
                 58999999955443444 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 4
      HTH_31  16 sqeevAerl 24 
                 +++++A+++
  CTQ28226.1 316 TLRAMADAA 324
                 444455444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2639.73
//
Query:       CTQ28227.1  [L=307]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-34  118.5   0.1    4.3e-34  117.8   0.1    1.4  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.1   2.4e-38   4.3e-34       1     210 []      29     259 ..      29     259 .. 0.92

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 2.4e-38
                   HHHHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHH...........TBSE CS
  AP_endonuc_2   1 laaaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaL...........Gapl 86 
                   l++aa+aG++++El ++++ p +       + lr+al+++ l +++ ++f +  +  e +  +     v+ +++ ++  +++             p+
    CTQ28227.1  29 LKEAAQAGYRSIELGPWGYLPTD------PASLRAALEQHQLSLVAGTIFDDLVS--EAHFPTL----VALTHQICRNLSQVaaaepipgrpfQPPY 113
                   689*******************9......69************999999999999..7778888....99999999999999888877777774444 PP

                   .EEEEBCC........GBCTTTSGHHHHHHHHHHHHHHHHHHHH.HHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTTEEEEEEHHHHHHHTTTHH CS
  AP_endonuc_2  87 .lvlhpGt........agagpkgseeeawerlaeslneladyae.kegvklalEtlagsgvelgdeelarlldavdspnvgvclDtgHlliaeedvd 173
                    +++ +G+        +ga++++  + +w+r++e++ +l   a  ++gv+ +++++ag  +e+  +e++rl ++++++  g+clDtgHl++a++d+ 
    CTQ28227.1 114 lVIIDFGNperarfagRGALAPRLNDKDWQRMMEHIIALSTLAWqEYGVRAVIHPHAGGSIEFA-DEIERLANDIPHDVAGLCLDTGHLYYAGMDPL 209
                   2444444488888888999*********************************************.******************************** PP

                   HHHHHHHGGEEEEEE.EESS.............TTTTSSTTEESTTSSSS CS
  AP_endonuc_2 174 dalraladrikhvHikDakg.............dlgagrdrhvpigeGei 210
                   d+l+++  r+ ++H+kD++               +++ +++++p+g G i
    CTQ28227.1 210 DWLDRYYHRLDYLHLKDVDPqvyqraihegidfFTACAEGVMCPLGSGAI 259
                   ***********************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2409.90
//
Query:       CTQ28228.1  [L=390]
Description: Uncharacterized oxidoreductase YfiI [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-27   94.2   0.0    1.5e-26   93.5   0.0    1.4  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    2.9e-10   40.2   0.0    5.8e-10   39.2   0.0    1.6  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   1.7e-30   1.5e-26       1     120 []      12     142 ..      12     142 .. 0.93

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 1.7e-30
                   EEEEEETTSHH...HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE...EESSHHHHHTCT.....TESEEEE-S-GGGHHHHHHHHHHTT CS
  GFO_IDH_MocA   1 lrvaiiGaGki...gskhlrplnesqrleevvalldpdaeraeavaesfgve...aysdleelladp.....eidavivatpngtheelakaaleag 86 
                   lr++++G+G     g+ h  +  + + ++ +++++d+daer +++ +++gv+   +y+d++ l++++      i+av+vatpn+th+++++aaleag
    CTQ28228.1  12 LRWGMVGGGGSsqiGYIHRSAALRDNTFTLLAGAFDIDAERGRQFGQRLGVDpdrCYADYQSLFRSEaarpdGIQAVSVATPNNTHYAICRAALEAG 108
                   689*****887788999988888888999************************************99875545************************ PP

                   -EEEEESSS-SSHHHHHHHHHHHHHHTS-EEEE- CS
  GFO_IDH_MocA  87 khvllEKPlattveeakelvelaekkgklvsvgy 120
                    hv++EKPl+++ eea+elv+l +++ k+++v+y
    CTQ28228.1 109 LHVVCEKPLCFSSEEADELVALSQRRRKIIGVTY 142
                   ******************************9997 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   6.5e-14   5.8e-10       1     115 [.     154     277 ..     154     278 .. 0.92

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 6.5e-14
                     HHHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSH.......HCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEE..E CS
  GFO_IDH_MocA_C   1 KelIengklGevvsvdvwtldtragaeakkrwkrrk.......kksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaav..m 86 
                     + +I++g lG+++ v+  +   +++++ +  +   +       ++++ vlgdl++H + l+ + ++q +++  ++ r++++ ++a+ ed+a+  m
      CTQ28228.1 154 RQMIADGLLGDIRIVNMQFAHGFHAQPVEQENASTRwrvdprfVGPSYVLGDLATHPLFLVETMAPQLKITRLMCARQSFVKSRAPLEDNAHvlM 248
                     679**************99988888777666555555557799**************************************************** PP

                     EEEEEEETTEEEEEEEECCTSSSEEEEEE CS
  GFO_IDH_MocA_C  87 svlnlekgsgevitlesgvskglsiryvi 115
                     ++ n++ gs++++  + g ++g + r+++
      CTQ28228.1 249 EYDNGAIGSLWSSAVNCGSMHGQKVRIIG 277
                     **************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2958.82
//
Query:       CTQ28229.1  [L=368]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.3e-130  432.1   0.0   9.1e-130  431.7   0.0    1.1  1  DUF4056   Protein of unknown function (DUF4056)


Domain annotation for each model (and alignments):
>> DUF4056  Protein of unknown function (DUF4056)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  431.7   0.0  5.1e-134  9.1e-130       3     266 .]      36     299 ..      34     299 .. 0.99

  Alignments for each domain:
  == domain 1  score: 431.7 bits;  conditional E-value: 5.1e-134
     DUF4056   3 eleaPeglrpCCafGynlkvkvagipvPfyrldnvveadklGehkyndsalsasasllglsdeknGllytkrgGfiDiahvrDtaDntlylfseilakL 101
                 el +Pe+lrpCCafGy+l+v++agip+P+y+++nv+++ +lG+h+yndsa++a+++llgls+e+nGl+yt+rgGfiDiahvrDtaDnt+ylf++i ++L
  CTQ28229.1  36 ELPPPESLRPCCAFGYDLHVRAAGIPIPMYQIGNVLTLGTLGKHHYNDSAFGAVKNLLGLSEEQNGLIYTRRGGFIDIAHVRDTADNTFYLFNRIAPTL 134
                 6889*********************************************************************************************** PP

     DUF4056 102 GqeakielseelaerkielkaftsplsaeerytlaaelaaklafqlaewheiaqWyGyesvagfseevsafspeDLysnllGarlalslilqgkalske 200
                 Gq+ +i +seel+ r+++l+aft+p+  ++ry+laa+la++laf++a+wheiaqWyG++sv+gfsee+safspeDLysnllGarla+++il+g+  s e
  CTQ28229.1 135 GQAGRIFYSEELGVRRVQLNAFTPPAGVRQRYQLAAWLAGHLAFEIAQWHEIAQWYGFQSVPGFSEEISAFSPEDLYSNLLGARLAINVILSGHGGSLE 233
                 *************************************************************************************************** PP

     DUF4056 201 eynkaleklleealaeleavskketkakfdavdGkWWdskrrvPdkflvlkrdyelgdkrlPtlvp 266
                 +yn+a++++l++ l++l ++++ et+a+f+++dG+WW+s+rrvPdkflvlkr+y+l+++rlPt vp
  CTQ28229.1 234 DYNQAMDAALKQVLTRLLVATRGETEAMFQQIDGDWWNSHRRVPDKFLVLKRNYDLQENRLPTPVP 299
                 **************************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2825.94
//
Query:       CTQ28230.1  [L=95]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       176  (0.0098165); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 733.32
//
Query:       CTQ28231.1  [L=231]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-48  163.8   0.0    5.4e-48  163.6   0.0    1.0  1  TENA_THI-4  TENA/THI-4/PQQC family


Domain annotation for each model (and alignments):
>> TENA_THI-4  TENA/THI-4/PQQC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.6   0.0     3e-52   5.4e-48       7     209 ..      21     224 ..      15     225 .. 0.96

  Alignments for each domain:
  == domain 1  score: 163.6 bits;  conditional E-value: 3e-52
                 HHHHHHCSHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT-HHHHHCTTT--HHHHHH CS
  TENA_THI-4   7 iwkeyinHpFvkalakGtlpreqfqayviqdylylknfvrvlaiilskssdlevrrelesrivdhdgeeielhlrlaealGlsreelsktkpspatkay 105
                  w++y+ HpFv++la+Gtl    f+ y+ qdyl+l++f+r++a+ +sk  +l ++ + ++  +  + +e+ lh+ ++ ++G+s++e+ +  + p+t +y
  CTQ28231.1  21 DWQRYVAHPFVQQLADGTLAENAFRRYLTQDYLFLIHFARSYALLVSKLRTLPEM-RAAAASMNAILNELPLHVGYCAQWGISEPEMAAQPEAPETLNY 118
                 5999***************************************************.99999************************************** PP

                 HHHHHHHHCHS-HHHHHHHHHHHHHHHHHHH.HHHCCHHHS-TSCHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHTSHHHH.HHHHHHHHHHHHHHHHH CS
  TENA_THI-4 106 vrylldlarrgslaeavaallpclfvyqeia.erlkeklralegpeyyewvkeyaseefraaveeakrllerllakvsdeq.leelqeiflkalefets 202
                 +ry ld++ +g+ +++++al+pc+ +y+ei    l+++ ++l+ ++y  w+ +y++e++ + v+ a +lle+++++   e+ + el eif++a+++e +
  CTQ28231.1 119 TRYVLDIGHSGDALDLLVALMPCVAGYAEIGlGLLQHPATRLDDNPYASWIRNYGDEGYLQGVSAALALLETVWQQRGSEArITELSEIFTTATRLEAQ 217
                 *******************************677777777************************************988889***************** PP

                 HHHHHHT CS
  TENA_THI-4 203 fltmald 209
                 f++m l+
  CTQ28231.1 218 FWQMGLN 224
                 ****886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1833.18
//
Query:       CTQ28232.1  [L=242]
Description: Uncharacterized ABC transporter ATP-binding protein HI_0354 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-26   93.0   0.0    3.1e-26   92.5   0.0    1.2  1  ABC_tran     ABC transporter
    1.1e-08   35.2   0.0    0.00019   21.3   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
     0.0001   22.7   0.7    0.00017   22.0   0.7    1.4  1  AAA_16       AAA ATPase domain
    0.00053   19.5   0.1     0.0048   16.3   0.0    1.9  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0015   18.5   0.0     0.0033   17.3   0.0    1.5  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.064   13.0   0.0       0.15   11.8   0.0    1.6  1  AAA_29       P-loop containing region of AAA domain
      0.085   13.0   0.0       0.15   12.3   0.0    1.4  1  AAA_33       AAA domain
      0.087   12.5   1.7       0.24   11.1   1.7    1.8  1  AAA_30       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.0   1.4e-29   3.1e-26       2     136 ..      22     156 ..      21     157 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 1.4e-29
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...........esdeeiekal 89 
                 +n+s+++  g+ v ++G +GaGK++Ll+++agl   t Ge+          + +  + +++++ q++ l p l+vr+n            ++++++++l
  CTQ28232.1  22 DNLSFTVPGGQWVSLLGASGAGKTSLLRVMAGLAPATRGEVVAS-------DGQPIQGRLAWMGQKDLLYPWLSVRDNvalgarlrgekVDRARVAALL 113
                 89***************************************433.......5677788****************************9877777899999 PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++l+ ++d +     ++LSgG++qr alar+l ++++++l+DEp+
  CTQ28232.1 114 EQVELSSCADARP----ATLSGGMRQRAALARTLYEDRPIVLMDEPF 156
                 9999999888888....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   5.7e-05      0.13       4      25 ..      36      57 ..      34      81 .. 0.79
   2 !   21.3   0.0   8.5e-08   0.00019     187     299 ..      97     187 ..      86     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.7e-05
      AAA_21  4 liGpNgsGKSnLLdaldllarl 25
                l G+ g+GK++LL+ + +la +
  CTQ28232.1 36 LLGASGAGKTSLLRVMAGLAPA 57
                89****************9754 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 8.5e-08
      AAA_21 187 rlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkel 285
                  ++r+ k +++++ +l+e++el+ ++d r                  ++ lS G+++ +al+  l++++   +++l DEp + L+    +r+ +l   l
  CTQ28232.1  97 ARLRGEKVDRARVAALLEQVELSSCADAR------------------PATLSGGMRQRAALARTLYEDR---PIVLMDEPFSALDTLTRTRIQTLAATL 174
                 56677777777888888888888888887..................678********99999999999...**************7777777666444 PP

      AAA_21 286 srngaQviltTHSp 299
                  + g  v+l TH+p
  CTQ28232.1 175 LA-GRTVVLITHDP 187
                 45.7*********9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.7   7.6e-08   0.00017      11     164 ..      19     176 ..      17     199 .. 0.64

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 7.6e-08
      AAA_16  11 qLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql........esaipysalaqalareellrqlldeaesaeleawrekl 101
                 +L + l+ +  g+ + v l G+sG GK+sl+r  +  + +++g +++ + +          ++++  ++++++ ++   l + l+ ++ + ++ ++   
  CTQ28232.1  19 RLFDNLSFTVPGG-QWVSLLGASGAGKTSLLRVMAGLAPATRGEVVASDGQPIqgrlawmgQKDLL-YPWLSVRDN-VALGARLRGEKVDRARVAALLE 114
                 6777788666665.89***************99997666665555444444442244444333333.589999977.5555555543332333333333 PP

      AAA_16 102 eealaavpelagaea...srllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrlles 164
                 + +l++++++++a      r +++l+r l    + +rp+vl  + +  +d+ +++ +++L+++l +
  CTQ28232.1 115 QVELSSCADARPATLsggMRQRAALARTL---YE-DRPIVLMDEPFSALDTLTRTRIQTLAATLLA 176
                 44444555555555523344444444444...44.7899999999999999999999999887655 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.11   2.5e+02      27      42 ..      34      49 ..      21      53 .. 0.84
   2 !   16.3   0.0   2.2e-06    0.0048     112     199 ..      98     187 ..      87     207 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
                EEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxx RF
       SMC_N 27 taivGpNGSGKsnlld 42
                 +++G+ G+GK++ll 
  CTQ28232.1 34 VSLLGASGAGKTSLLR 49
                6789*********985 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 2.2e-06
                 EETTEEE-HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 112 kingkevtkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislre 199
                 ++ g++v ++ v+ lle++++s+       +LSgG ++ +ala       ++ +p++l+De  +aLD   ++++ +l  +      ++ i+++ 
  CTQ28232.1  98 RLRGEKVDRARVAALLEQVELSSCadarpaTLSGGMRQRAALART----LYEDRPIVLMDEPFSALDTLTRTRIQTLAATLLAGRTVVLITHDP 187
                 5789999999********9998777777779*******9998755....79*******************999999888877777777777765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.5e-06    0.0033      78     133 ..       9      65 ..       2      70 .. 0.80
   2 ?   -3.2   0.0       3.1   6.9e+03     100     105 ..     178     183 ..     158     204 .. 0.55

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.5e-06
                  EEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase  78 evllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevsek 133
                  + l +++ +++ +++l+  + + + + l+G SG+GK++L+ ++++ + +  gev ++
   CTQ28232.1   9 RGLSLHVGDRRLFDNLSFTVPGgQWVSLLGASGAGKTSLLRVMAGLAPATRGEVVAS 65 
                  5556667777888999999998899*****************999877777777665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.1
                  SEEEEE CS
  RsgA_GTPase 100 ktsvlv 105
                  +t+vl+
   CTQ28232.1 178 RTVVLI 183
                  333332 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.7e-05      0.15      11      39 ..      20      48 ..      12      62 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.7e-05
      AAA_29 11 tfdghtieidlkg.atlltGpsGsGKSTll 39
                 fd+ ++++   g  + l G+sG+GK++ll
  CTQ28232.1 20 LFDNLSFTVP-GGqWVSLLGASGAGKTSLL 48
                6777777776.456999************9 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.5e-05      0.15       4      47 ..      36     125 ..      34     197 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.5e-05
      AAA_33   4 lvGlpGsGKstlaerllkklg...avllssdt...........................lrrrlfgtdqqskt................d 47 
                 l G++G+GK+ l++ ++   +   +++++sd                            l  rl+g+++++ +                +
  CTQ28232.1  36 LLGASGAGKTSLLRVMAGLAPatrGEVVASDGqpiqgrlawmgqkdllypwlsvrdnvaLGARLRGEKVDRARvaalleqvelsscadaR 125
                 67************986555566899****999988888888888888888888777763334444444444444444444333333222 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.7   0.00011      0.24      18      50 ..      31      63 ..      24     191 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrvi 50
                 +++ l G+ G+GKt +l++++ ++ a  g+v+
  CTQ28232.1 31 GQWVSLLGASGAGKTSLLRVMAGLAPATRGEVV 63
                4577889*****************999965655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1956.71
//
Query:       CTQ28233.1  [L=246]
Description: putative ABC transporter permease protein HI_0355 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-25   88.3  16.5    8.7e-25   87.5  16.5    1.3  1  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.41   10.8   2.2       0.74    9.9   2.2    1.4  1  Shadoo        Shadow of prion protein, neuroprotective


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5  16.5   9.7e-29   8.7e-25       1     177 [.      67     238 ..      67     242 .. 0.96

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 9.7e-29
  BPD_transp_1   1 gillGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   g++lG+ +a  +  + +l+++l+pl+ + +++P+f+la+llv       +lg+++ + +++++l ++++v+  + ++lr +++++  +ar + as  
    CTQ28233.1  67 GVTLGVTLAlgMILSPRLQRWLMPLVLTSQAIPVFALAPLLV------LWLGFGMSAKVAMAVLVIFFPVTSAFFDGLRRVNQEYLDLARSMNASFG 157
                   899***************************************......9************************************************ PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqr 177
                     +r+v+l +alp + +gl++a++ +  ga++ e++gs  Glg+++l+a+   +++    +++++lv+++lll l++d l  
    CTQ28233.1 158 AQLRHVRLMAALPALGSGLRMAAAVAPIGAIIGEWVGSAEGLGYVMLNANARLQTDICF-AALFILVLLTLLLWLAVDTLLH 238
                   ********************************************************666.9999999999999999887754 PP

>> Shadoo  Shadow of prion protein, neuroprotective
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.2   8.2e-05      0.74      27      71 ..     157     201 ..     149     211 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 8.2e-05
      Shadoo  27 gasrvrvrpaprysaagsslrvaaagaaagaaagaaaglaagsgw 71 
                 ga    vr      a gs lr+aaa a  ga  g   g a g g+
  CTQ28233.1 157 GAQLRHVRLMAALPALGSGLRMAAAVAPIGAIIGEWVGSAEGLGY 201
                 5555567777788899**********************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2117.79
//
Query:       CTQ28234.1  [L=311]
Description: putative thiamine biosynthesis protein HI_0357 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-65  221.3   0.1    1.7e-65  221.0   0.1    1.1  1  NMT1            NMT1/THI5 like
    5.6e-07   29.2   0.4    1.5e-06   27.8   0.3    1.6  2  SBP_bac_3       Bacterial extracellular solute-binding protei
     0.0039   16.9   0.1      0.036   13.8   0.1    2.1  1  NMT1_2          NMT1-like family
     0.0039   16.8   0.0     0.0054   16.3   0.0    1.1  1  YhfZ_C          YhfZ C-terminal domain
     0.0073   15.7   1.3      0.097   12.0   0.4    3.2  2  LysR_substrate  LysR substrate binding domain
  ------ inclusion threshold ------
      0.014   15.0   0.5       0.28   10.7   0.2    2.3  2  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
      0.023   14.1   0.0      0.032   13.6   0.0    1.2  1  NMT1_3          NMT1-like family


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.0   0.1   6.8e-69   1.7e-65       1     215 [.      34     244 ..      34     245 .. 0.99

  Alignments for each domain:
  == domain 1  score: 221.0 bits;  conditional E-value: 6.8e-69
                 -GGGHHHHHHHHTTHHHHTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEEE- CS
        NMT1   1 npnhaglyvAkekGYFkeeGldVeivepadpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqeplsglivlkdsgikspkDLkGkrigyv 99 
                 np+ha+++vA++ G Fk++GldV+i++p+dp+ ++++va+ +ad++++yq+++    ++glp+v+v++l+++pl+++i+l++ +ik+p+DL+Gk++gy+
  CTQ28234.1  34 NPDHAPIMVAEQIGAFKAQGLDVRIIPPSDPALPPRMVAARQADLAITYQPQVHFFADEGLPLVRVGTLINSPLNTVIALDK-QIKTPADLQGKKVGYS 131
                 89*****************************************************************************977.9*************** PP

                 S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT-----SEEEEEEHHHHHH-HHHHHHH CS
        NMT1 100 gspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaaiggyenwegvelesegkelrifaladlgvpdyyslvlitnekllkenpelvkkF 198
                  s++e+a+l ++ +++g+dp++++lvnv +++l++all+g+vDa+iggy+n+e+ el+++gk   +++++d+gvp+y++lv++++ + + e   +++kF
  CTQ28234.1 132 VSGIEQATLATMAQHAGIDPASIKLVNV-NFQLTSALLAGQVDAVIGGYRNIEAQELKLQGKTPVVMNVEDYGVPAYDELVIVAHRDAIHE--AKIRKF 227
                 ****************************.999999*******************************************************9..****** PP

                 HHHHHHHHHHHHHSHHH CS
        NMT1 199 lrAlkkGyeyalahPee 215
                 l+Al+ G+ y+ ahP++
  CTQ28234.1 228 LTALQAGVGYLRAHPQK 244
                 ***************97 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.73   1.9e+03     146     170 ..      69      93 ..      43     113 .. 0.70
   2 !   27.8   0.3     6e-10   1.5e-06     100     210 ..     115     232 ..     101     237 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.73
                 HHHHTTSSSEEEEEHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 146 qaLkngrvdavvadspvlaylvkkn 170
                 ++++++++d +++ +p ++ ++++ 
  CTQ28234.1  69 RMVAARQADLAITYQPQVHFFADEG 93 
                 4678888888888888888777665 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 6e-10
                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC....TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHH..HHHHHCCGCCEEEE.ECGGCECEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkk....gaeivefdtleealqaLkngrvdavvadspvla..ylvkknpdkkvvlv.eeplsseeyaiav 191
                 ++ik++adL+gkkvg + +   +++l+  +++     a+i+ ++ + +++ aL +g+vdav++   +++  +l  + + + v+ v +  + +++  ++v
  CTQ28234.1 115 KQIKTPADLQGKKVGYSVSGIEQATLATMAQHagidPASIKLVNVNFQLTSALLAGQVDAVIGGYRNIEaqELKLQGKTPVVMNVeDYGVPAYDELVIV 213
                 579************9999998888887565589998888999999****************9865555004444444444444486666666666777 PP

                 ETTTHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 192 rkgdseLrkainkalaelk 210
                    d    ++i k+l +l+
  CTQ28234.1 214 AHRDAIHEAKIRKFLTALQ 232
                 7777777777777777766 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   1.4e-05     0.036      10     178 ..      29     177 ..      21     179 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
      NMT1_2  10 lGfialtdaaplvvakekglfakeGltvelekqaswaelrdkllagelDaahvltpap.llidlGiggakadmkvlaslnlnGqaitlsnklkdkkvsd 107
                 l +  + d+ap++va++ g f+ +Gl+v+++  +  a   + ++a + D+a+  +p++ + +d+G+     ++  + +l   +   +++ +      ++
  CTQ28234.1  29 LDWYINPDHAPIMVAEQIGAFKAQGLDVRIIPPSDPALPPRMVAARQADLAITYQPQVhFFADEGL-----PLVRVGTLINSPLNTVIALD------KQ 116
                 55666679***********************9999999999999*********6666616789999.....88888888888877777654......55 PP

      NMT1_2 108 akalkdlvakkkaskplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcv 178
                  k  +dl       ++ k+++ + ++  +  l +  + aG+dp a +klv v   q+ ++l ag++d+ ++
  CTQ28234.1 117 IKTPADL-------QGKKVGY-SVSGIEQATLATMAQHAGIDP-ASIKLVNVN-FQLTSALLAGQVDAVIG 177
                 5555555.......5778999.66777788888888999****.999999996.699999999**999876 PP

>> YhfZ_C  YhfZ C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.1e-06    0.0054     102     209 ..     111     223 ..      98     233 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.1e-06
      YhfZ_C 102 llrdgekseikd..glrvgvDsnSlDqkilteai....fegkdvelveisynqllelllkgkiDavvWnldevqeeeelklkelkl.eslkekelveea 193
                 +  d++ ++  d  g +vg+  + + q++l++ +    +   +++lv+++++ l  +ll+g++Dav+  + +++ + elkl++ +  +   e+  v + 
  CTQ28234.1 111 IALDKQIKTPADlqGKKVGYSVSGIEQATLATMAqhagIDPASIKLVNVNFQ-LTSALLAGQVDAVIGGYRNIEAQ-ELKLQGKTPvVMNVEDYGVPAY 207
                 45555555555666999999999999999975441111344589******96.6678999***********99998.6666665550555566667788 PP

      YhfZ_C 194 seAvlvirkeneklka 209
                  e v+v++++  + ++
  CTQ28234.1 208 DELVIVAHRDAIHEAK 223
                 8888888888766555 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.4   3.8e-05     0.097      24     205 ..      45     232 ..      34     236 .. 0.67
   2 ?   -1.2   0.0      0.43   1.1e+03      27      42 ..     248     263 ..     246     274 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.8e-05
                     HHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS....CCTTEEEEEEE...EEEEEEEEETTSGGGGSSSE.CGGGGCTSEEEEES CS
  LysR_substrate  24 llarfraryPevelelvegdseelldllaegelDlairagpp....edsglearpLa...eeplvlvaspdhpLargepv.sledLadeplille 110
                      + +f+a+  +v++   ++ ++   +++a++++Dlai+++p+    +d+gl  ++++   + pl  v++ d       ++ +++dL++ + + ++
      CTQ28234.1  45 QIGAFKAQGLDVRIIPPSD-PALPPRMVAARQADLAITYQPQvhffADEGLPLVRVGtliNSPLNTVIALDK------QIkTPADLQGKK-VGYS 131
                     5677777777777776644.499999******************9977776666555222788888888885......555999997766.4556 PP

                     TTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESST..........TCEEEEEEEEETTCCCHH CS
  LysR_substrate 111 egsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpep..........plprelylvyrkgrelsp 195
                      +   + +l    ++ag++p     vn    l ++ +aG   a++  +     +++ +l+ l+ + p          p+  el++v +++  + +
      CTQ28234.1 132 VSGIEQATLATMAQHAGIDPASIKLVNVNFQLTSALLAGQVDAVIGGYR---NIEAQELK-LQGKTPvvmnvedygvPAYDELVIVAHRDAIHEA 222
                     5555667777777777999988888888888888888887766665554...23333444.3333333444444464444777777777777777 PP

                     HHHHHHHHHH CS
  LysR_substrate 196 avrafidflr 205
                     ++r f+ +l+
      CTQ28234.1 223 KIRKFLTALQ 232
                     7777777776 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.43
                     HHHHHSTTEEEEEEEE CS
  LysR_substrate  27 rfraryPevelelveg 42 
                     +f+a++Pe++ el   
      CTQ28234.1 248 AFAAAHPELRTELNHQ 263
                     799*****99998765 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1    0.0033       8.4      94     160 ..     114     174 ..      50     174 .. 0.79
   2 ?   10.7   0.2   0.00011      0.28      22      98 ..     142     220 ..     137     235 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0033
                     TSS--SHHHHGG-EEEE--TT-TTTT.HHHHHHTCCCCT--HHHHSSEEEE--HHHHHHHHHTTSSSE CS
  Phosphonate-bd  94 dsdiqsledLkgktiafvspsStsGy.lvpaalLvkeagldpeddfsevfsgshdaavlavlsgdada 160
                     d +i++ +dL+gk++++    S+sG  ++ +a++ + ag+dp   ++   ++   +   a+l+g++da
      CTQ28234.1 114 DKQIKTPADLQGKKVGY----SVSGIeQATLATMAQHAGIDPAS-IK--LVNVNFQLTSALLAGQVDA 174
                     567999***********....55553356666666899999873.34..4455588888888888886 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00011
                     HHHHHHSSE.EEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS..-EEEEEEEEETT--SEEEEEEEEETTSS-- CS
  Phosphonate-bd  22 yLseelGve.velvvatdyaavvealragqvDiaflgplayvqardqa..gveplatrvrsdGsasyrsviivradsdiq 98 
                      + ++ G++   ++ ++   ++  al agqvD + +g++  ++a++ +  g +p++++v+ +G + y  ++iv+  ++i+
      CTQ28234.1 142 TMAQHAGIDpASIKLVNVNFQLTSALLAGQVDAV-IGGYRNIEAQELKlqGKTPVVMNVEDYGVPAYDELVIVAHRDAIH 220
                     556666666666666666678899********65.67777788886644277***************9999999888876 PP

>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.3e-05     0.032      82     164 ..      96     175 ..      70     201 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.3e-05
      NMT1_3  82 lraitmlyaevfqlvvskdsgigsiadlkgkrvsvGpegsGtegsarailea.lglsekdlklleelgygesadalkdgqldga 164
                 l  +++l + +++ v++ d++i++ adl+gk+  vG   sG e++++a ++  +g++ + +kl  +++  + ++al  gq+d++
  CTQ28234.1  96 LVRVGTLINSPLNTVIALDKQIKTPADLQGKK--VGYSVSGIEQATLATMAQhAGIDPASIKL-VNVN-FQLTSALLAGQVDAV 175
                 55678899999********************8..59999*****9998886615799999997.5654.567889999**9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 2579.95
//
Query:       CTQ28235.1  [L=460]
Description: diaminobutyrate--2-oxoglutarate aminotransferase (L-diaminobutyric acid transaminase) (Diaminobutyrate transaminase) (DABA aminotransferase) (DABA-AT) (L-2,4-diaminobutyrate:2-ketoglutarate 4-aminotransferase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.5e-101  338.8   0.0   4.2e-101  338.5   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
     0.0042   16.3   0.0      0.026   13.7   0.0    1.9  2  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.5   0.0  4.7e-105  4.2e-101       8     406 .]      39     452 ..      32     452 .. 0.93

  Alignments for each domain:
  == domain 1  score: 338.5 bits;  conditional E-value: 4.7e-105
                  -SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..S...EEEEESSHHHHHHH CS
  Aminotran_3   8 nlllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgld...kvflansGseAvet 102
                  +l+l+itkaeGv+ltd+d+k+ylD +++   ++lGh+hP+v++ +++++ +   +    lt+    +++e+ll+ +p++       f+  sG++Ave+
   CTQ28235.1  39 KLPLAITKAEGVWLTDADNKQYLDCLAGAGTLALGHNHPDVLQSIQSVITSGLPLHTLDLTTPLKDRFSEYLLSCLPGEGKeycLQFTGPSGADAVEA 136
                  45699**********************************************9888878899999999**********9655676678899******** PP

                  HHHHHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HH...HHHHHHHHHHHHHH...CHTCCCEE CS
  Aminotran_3 103 AlKlarkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkene...eeeaalleeleale...kkkkdeva 194
                  AlKla+k      +t +t++i+f+g++HG t+galsvtg+    k+ ++ ++pev +++yp  ++++         +al+ ++e+l+   +    + a
   CTQ28235.1 137 ALKLAKK------YTGRTAVISFSGGYHGMTHGALSVTGN-LSPKAAVNGMMPEVQFMPYPHLYRCPLGIggeAGVKALTYYFENLIndvESGVRKPA 227
                  *******......9**************************.89999********************98764446677888999**997666666777* PP

                  EEEE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTT CS
  Aminotran_3 195 AvivEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfg 292
                  Avi+E++qgegGv++a+ e+l+++r+++++h++llivDEvq Gf+rTGk+fA ehag++pD+++++Ka++gGlpl++ l+ ++  +a++pg+h +Tf 
   CTQ28235.1 228 AVILEAVQGEGGVNPAPVEWLQRIRKVTEEHGILLIVDEVQAGFARTGKFFAFEHAGIQPDIIVMSKAVGGGLPLAV-LGIKKQFDAWEPGHHTGTFR 324
                  ***************************************************************************75.66677789************ PP

                  T-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC............HHHHHHHHHCTEE-EEET CS
  Aminotran_3 293 GnplacavalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke............keilkkakekGvlilsaG 378
                  Gn la+a  l +l+ + ++k ++++++ g+ lk +L elqk+y vi++vRg+Glmi+ie+++++e+++            + + kk  e+G+++   G
   CTQ28235.1 325 GNQLAMATGLTTLRHLRDNKIADKVAAQGEWLKGKLAELQKRYPVIGHVRGLGLMIGIEIVKPNEAQDhmgcypadgelsALLQKKCFEAGLILERGG 422
                  *****************************************************************999**********9766778899******9999 PP

                  T..TEEEE---TT--HHHHHHHHHHHHHHH CS
  Aminotran_3 379 d..nvirllppliitdeeidelleilkkal 406
                  +   v+rllp+l i+d+e+d +l+++++al
   CTQ28235.1 423 RhgCVLRLLPSLLISDAELDVFLDKFEQAL 452
                  8878***********************997 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0     0.043   3.8e+02      74     110 ..     128     164 ..     110     174 .. 0.87
   2 !   13.7   0.0   2.9e-06     0.026     136     209 ..     213     287 ..     201     298 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.043
                    ESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHH CS
  Aminotran_1_2  74 gsGagaliealifllklnpgdeilvpdptyasyknil 110
                     sGa+a+ +al+ + k+   +++++++  y  +++++
     CTQ28235.1 128 PSGADAVEAALKLAKKYTGRTAVISFSGGYHGMTHGA 164
                    589************9999999999999998887765 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.9e-06
                    HHHHTTHHCTTETEEEEEEESS-TTT--B--HHHH.HHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH.HGGSTT CS
  Aminotran_1_2 136 eealkeapegnkktkvilvesphNPtGtvatleel.eklldlakkynlllfvDeaYagfvfgsldavat.ranvee 209
                    e+++++  +g  k+  +++e ++   G+ + + e+ + + ++++++++ll+vDe+ agf+ + + + a  +a++++
     CTQ28235.1 213 ENLINDVESGVRKPAAVILEAVQGEGGVNPAPVEWlQRIRKVTEEHGILLIVDEVQAGFARTGK-FFAFeHAGIQP 287
                    44555544556677889999999999998766665278999*******************9965.32322444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3769.67
//
Query:       CTQ28236.1  [L=490]
Description: L-2,4-diaminobutyrate decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-65  218.9   0.1    1.1e-64  218.5   0.1    1.1  1  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
    2.4e-10   40.2   0.7    6.6e-10   38.7   0.7    1.7  1  Beta_elim_lyase  Beta-eliminating lyase
    2.7e-06   26.3   0.0    1.2e-05   24.3   0.0    1.8  2  SepSecS          O-phosphoseryl-tRNA(Sec) selenium transferas
    0.00028   20.0   0.5     0.0019   17.2   0.5    2.3  1  Aminotran_5      Aminotransferase class-V
     0.0074   15.5   0.0      0.056   12.6   0.0    2.1  2  Aminotran_1_2    Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.5   0.1   3.1e-68   1.1e-64      21     374 ..      65     416 ..      46     417 .. 0.89

  Alignments for each domain:
  == domain 1  score: 218.5 bits;  conditional E-value: 3.1e-68
                    HHHHHHHHCTGGGS--TTSTTBHCSSH....HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCCT-EEEEESSHHHHHH CS
  Pyridoxal_deC  21 qilediekilapgvttwhspefhkllpagnslisllgdlLadainkngftweesPaltelevvvldwlaellglpeeflekegggvlqvgssestl 116
                    +i+  ie  l+  ++  h p++ + l   + +is ++++L +a n+ + +w++sP  t +e+ +++wl+  +g+p    +    gv+++g++ s+l
     CTQ28236.1  65 AIDRAIEYFLKDSLSVHH-PQCVAHLHCPSLVISQAAEVLINATNQSMDSWDQSPSATIIEMKLIEWLRARVGFP----AG-DAGVFTSGGTQSNL 154
                    566666666666666555.********9999********************************************....32.469*********** PP

                    HHHHHHHHHHHHHHHHHTTTS.HHHH...HCCEEEEEETTS-HHHHHHHHHHT-E...EEEE--BTTTBB-HHHHHHHHHHHHCTT.EEEEEEEEB CS
  Pyridoxal_deC 117 lallAartkvikemkekgkelkeaei...ldklvlytsdqahssvekaalvlgvk...lrvipldengklrgaalekaieedkekGlipffvvatl 206
                    ++l+ ar  ++ +  ++   +++  +     k  + +s++ah sv+k  +++g++   + ++++de  ++ +++l+++i +++++G  ++ +vat+
     CTQ28236.1 155 MGLMLARDAFFARQGHS---IQQDGLpgdIRKYKVLCSENAHFSVQKNMALMGLGyrsVTLVKTDEFARMDVSDLQAKIAQAQANGEQIMAIVATA 247
                    *********99875433...3444441114578889***********9999999977778899***999*************************** PP

                    S-TTT-BB--HHHHHHHHHHCT-EEEEE-TTGGGGGGSGGGGGGGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGCHHHH-EEECCCT.TT.. CS
  Pyridoxal_deC 207 GttvlgaFddlkelgdicekydlwlHvDAAyaGsaficpeirhllkgieradSitvnphKlllvlldcsalivkdkealqqalqleaeYLehed.. 300
                    Gtt  ga d l++++ i +++++wlHvDAA++G+++++ ++r  l g+e++dS+t+  hK    ++ c+a+++kd  + +  ++ +a YL+ e   
     CTQ28236.1 248 GTTDAGAIDPLRDIAGIAAEHQIWLHVDAAWGGALLLSEQYRDYLDGLELVDSVTLDFHKQFFQTISCGAFLLKDARHYE-LMRYQAAYLNSEFde 342
                    ***************************************************************************99865.56699****965466 PP

                    TTTSEECCCGSSSSSGHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEECSTTBSSEEEEEE CS
  Pyridoxal_deC 301 sdvaadlgtkaiplsrrvrilklwfvlralGveglqnqirksvelakyleklirkderfeivaevelglVcFrl 374
                        ++l  k +++ rr+++lklw+ l alG + + + i++ v +ak +++ ++ +   e+v++++l+ V Fr 
     CTQ28236.1 343 EHGVPNLVSKSLQTTRRFDALKLWMGLEALGQKQYAAIIDHGVTMAKNVAEYVKSQPTLELVMQPQLASVLFRS 416
                    4456899*****************************************************************95 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.7   1.8e-13   6.6e-10      70     271 ..     182     396 ..     124     415 .. 0.71

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.8e-13
                      TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-E CS
  Beta_elim_lyase  70 rgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygip 163
                      r+++v+++e+ah+  + + a+  l+   ++ +k++e   md+ +l+a+i++ +a  e+i +i+ t  +      +  ++ lr +a ia +++i 
       CTQ28236.1 182 RKYKVLCSENAHFSVQKNMALMGLGYRSVTLVKTDEFARMDVSDLQAKIAQAQANGEQIMAIVATAGTT----DAGAIDPLRDIAGIAAEHQIW 271
                      5667777777887777777777778888888899999**************888667776666666555....34578999************* PP

                      EEEEETTHHHHHHHHTS-CHHHH...TTSSEEEEESSSTT--SS..-EEEEE-HH....HHHHHHHHHHHHT---S.STHHHHH.......... CS
  Beta_elim_lyase 164 lhlDgARfanaakslgeivkemf...syvDsvtmslkKdllanv..Ggvlafrddeledylaerveqrkylggglr.qagvlaa.......... 241
                      lh+D+A  +  a  l+e+ ++++   + vDsvt+ + K  +  +  G++l+ + +   +y +  + q+ yl ++++ ++gv+            
       CTQ28236.1 272 LHVDAA--WGGALLLSEQYRDYLdglELVDSVTLDFHKQFFQTIscGAFLLKDAR---HY-ELMRYQAAYLNSEFDeEHGVPNLvskslqttrr 359
                      *****9..6677799******9977788***********9877622677766666...66.777788899999998778888887888888888 PP

                      .......HHHHHHHHSSTTHHHHH..HHHHHHHHHHH CS
  Beta_elim_lyase 242 .....leagiraleeglaslerdh..ktaeqlaekle 271
                           l +g+ al ++ + +  dh   +a++ ae ++
       CTQ28236.1 360 fdalkLWMGLEALGQKQYAAIIDHgvTMAKNVAEYVK 396
                      8887766666666666444433331155666666555 PP

>> SepSecS  O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.2e-09   1.2e-05     110     225 ..     192     309 ..     182     336 .. 0.82
   2 ?   -1.0   0.0      0.15   5.5e+02     261     292 ..     365     396 ..     354     400 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.2e-09
                 ETCHHHHHHHCTT-EEEEE-EEECTTEEEEHHHHHHHHH..HCCTCCCEEEEEECSSTTTTB----HHHHHHHHHCCT--EEEEGCCC...CT-HHHHH CS
     SepSecS 110 dekSslkavelaGleialvekvlegDelitdvedveeii..ekkreevilavlstlsffaprspDdvkeiakiCaeydvPhlvNgAYa...iqsekyie 203
                 ++ S  k + l+Gl  + v  v+  + ++ dv+d +++i   + ++e i+a+++t  +      D++++ia i ae+ + + v +A++   + se+y++
  CTQ28236.1 192 AHFSVQKNMALMGLGYRSVTLVKTDEFARMDVSDLQAKIaqAQANGEQIMAIVATAGTTDAGAIDPLRDIAGIAAEHQIWLHVDAAWGgalLLSEQYRD 290
                 666999*******************************9976678999*********999999************************9855555777777 PP

                 HHHHHHHHTTC-EECCCHCHCC CS
     SepSecS 204 klkkalkvGRvdvvvksldknl 225
                  l+ +l+   vd v  +  k++
  CTQ28236.1 291 YLD-GLEL--VDSVTLDFHKQF 309
                 664.4444..555555555555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.15
                 CCCCHHHCCHHHCCHHHHHHHHHHHHHHHHHH CS
     SepSecS 261 vlisllllGskaykkllkeqkesfkllreklk 292
                 + + l++lG+k+y +++ +   + k + e +k
  CTQ28236.1 365 LWMGLEALGQKQYAAIIDHGVTMAKNVAEYVK 396
                 567899************99999999998877 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.5   5.4e-07    0.0019      90     177 ..     185     277 ..     129     279 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.4e-07
                  EEEEETTSHGGGTHHHHHHHHHHTE.EEEEEEBETTSCBEGGGHHHH-......-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-T CS
  Aminotran_5  90 eivvteaehhanlvpwqelakrtga.kvkvipldeegeldldelekll......nektklvaithvsnvtGtiqpveeigklakkkgalvlvDaa 177
                  +++ +e+ h +    ++ +    g+  v+ ++ de  ++d+++l++++       e++ ++  t+  +  G i+p+ +i+ +a +++++++vDaa
   CTQ28236.1 185 KVLCSENAHFSVQKNMALMG--LGYrSVTLVKTDEFARMDVSDLQAKIaqaqanGEQIMAIVATAGTTDAGAIDPLRDIAGIAAEHQIWLHVDAA 277
                  56777777777774444433..454159999*****************8888755888888899999***************************8 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1       0.1   3.8e+02     254     282 ..      23      52 ..       7      57 .. 0.86
   2 !   12.6   0.0   1.5e-05     0.056      94     193 ..     184     281 ..     124     297 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.1
                    HHHHHHHHHHHHHHHHHHH.HHHHHHHHHH CS
  Aminotran_1_2 254 sllqaavaaalsdallkqs.eleemrqrlq 282
                    +++++av+++l+ ++++q  +++e r+r+ 
     CTQ28236.1  23 EQTSQAVVQWLKQPEMYQGkSVDELRERIS 52 
                    68999**********999899999999996 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.5e-05
                    -EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTT.EE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEE CS
  Aminotran_1_2  94 deilvpdptyasyknilrlsggevvryplyseedf.hldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDe 188
                     ++l ++  + s++++  l+g+  +++ l + ++f ++d+ +l++++++a+++  ++  i+ +      G++ +l ++  +   a ++ ++l vD 
     CTQ28236.1 184 YKVLCSENAHFSVQKNMALMGLGYRSVTLVKTDEFaRMDVSDLQAKIAQAQANGEQIMAIVATAGTTDAGAIDPLRDIAGI---AAEHQIWLHVDA 276
                    578889999999***********99999999977758**************999966666666666666666666666666...************ PP

                    TTTTC CS
  Aminotran_1_2 189 aYagf 193
                    a +g 
     CTQ28236.1 277 AWGGA 281
                    98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 3940.18
//
Query:       CTQ28237.1  [L=293]
Description: LysR substrate binding domain protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-22   79.8   4.3    2.4e-22   79.3   4.3    1.3  1  LysR_substrate  LysR substrate binding domain
    2.1e-16   59.6   1.0    4.9e-16   58.4   1.0    1.7  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.058   13.2   0.1      0.095   12.5   0.1    1.3  1  SKA2            Spindle and kinetochore-associated protein 2


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   4.3   4.1e-26   2.4e-22       2     208 ..      92     287 ..      91     288 .. 0.85

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 4.1e-26
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGG... CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLar... 92 
                     ++l+g++++g+ ++++++l+p++l +f++++P+v++  +++ +  l ++lae  lDla++++ + + +g     L+  pl ++a+pd  + +   
      CTQ28237.1  92 ERLTGEIHLGMQEDFGESLMPEILGQFKRHHPQVRIVARVDRNGPLRQALAEEALDLALLWQTEdQGPG-----LGLCPLAWIAHPDLDIRAllv 181
                     5789************************************************************77777.....*************96666655 PP

                     .SSSECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEE CS
  LysR_substrate  93 .gepvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylv 186
                      gep+        pl++++ ++ +r ++ + l++ag++++v++ + sl+ + a+v+aGlG+++  r  +   l+  +   lp p+  l   l   
      CTQ28237.1 182 sGEPL--------PLVMFDSPCLMRSRAIACLDAAGIPWQVVFVSHSLSGIWAAVQAGLGLTIRTRIGMPGNLRPAGGL-LPAPG-SLAVSLR-Q 265
                     78888........**************************************************9999997766443333.34444.3333332.4 PP

                     EETTCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 187 yrkgrelspavrafidflreal 208
                     +++++ +s+av+ + ++++eal
      CTQ28237.1 266 TPREESHSAAVALLGELMTEAL 287
                     5666668888888887777765 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   1.0   8.2e-20   4.9e-16       1      60 []      10      69 ..      10      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 8.2e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l++lr fv+ +e+gsf++AA +L  s +avs q+k+LE++ g+ L++++gr+l+LT++Ge
  CTQ28237.1 10 LDALRSFVTGMECGSFAQAALRLSRSTSAVSSQLKKLESQCGAALVTKQGRHLVLTAEGE 69
                679********************************************************7 PP

>> SKA2  Spindle and kinetochore-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.6e-05     0.095      41      91 ..      30      91 ..      22     106 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.6e-05
        SKA2 41 vkLlerlkkvkeelqaLkeqceellaekk...........elidkirttlvanrellqqLqa 91
                ++L ++ ++v ++l++L++qc + l +k+           +l++ +r+ l+ n e+l+ Lq 
  CTQ28237.1 30 LRLSRSTSAVSSQLKKLESQCGAALVTKQgrhlvltaegeKLMSYARRLLALNDETLRALQG 91
                67888899****************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2288.78
//
Query:       CTQ28238.1  [L=396]
Description: putative cytochrome c biogenesis protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-13   50.1  15.4    2.4e-12   47.2  15.4    2.0  1  DsbD           Cytochrome C biogenesis protein transmembrane 
    4.8e-11   42.6   0.0    7.3e-11   42.1   0.0    1.2  1  AhpC-TSA       AhpC/TSA family
    1.2e-09   38.0   0.0    1.8e-09   37.4   0.0    1.3  1  Redoxin        Redoxin
    7.1e-06   26.3   0.0    1.1e-05   25.6   0.0    1.3  1  Thioredoxin_8  Thioredoxin-like
     0.0085   16.1   0.0      0.018   15.0   0.0    1.4  1  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
      0.084   13.3   0.0       0.13   12.7   0.0    1.3  1  Thioredoxin_2  Thioredoxin-like domain
       0.22   11.4   3.2       0.33   10.8   0.4    2.4  2  DUF2975        Protein of unknown function (DUF2975)


Domain annotation for each model (and alignments):
>> DsbD  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2  15.4   9.5e-16   2.4e-12       1     205 [.       6     201 ..       6     208 .. 0.71

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 9.5e-16
        DsbD   1 aflaGllsflsPCilpliPaylsyisgvsvedvktekkkvkvllkallFvlGlslvfvslglsaaflgqllkdvkevirrvaglivillGlhflgvfk. 98 
                 afl+G+l+ lsPC lp+iP+ ++ +       ++    ++ ++l       G++l+f +++  ++ +   +++++ + r +a     l+Gl++l   + 
  CTQ28238.1   6 AFLGGMLTLLSPCTLPVIPLLFASVR-----GRRG---QLAIML------AGMALMFGAVSWLVTVASGWVVNLTLAGRGLALAFFALVGLSLLSQ-Rv 89 
                 69******************998554.....3444...454444......4566666555555555555555555555555555555566655541.22 PP

        DsbD  99 .....ievleklklllkikkkaelsvlgalllGltFalgwsPCigPvlasvlalaaskeslakgallllvyvlGlaipfllvglllellkkklkslkky 192
                       +++   ++l ++++++    +g+ll+Gl+ +l w+PC+gPvl+++l l   +  +a++ +lll+y  G a+ ++l+g     l  +l+  + +
  CTQ28238.1  90 aqrltSPLVALGNQLNDASSRQRG-WIGSLLAGLAVGLLWAPCAGPVLGAILSLGFVHPGQATTGGLLLAYGSGGALMLFLLGWCGAALITRLRRGQAF 187
                 223325555555566776666666.9*********************************************************9988888888888877 PP

        DsbD 193 skavei.aggvllv 205
                  + ++  agg +l 
  CTQ28238.1 188 GERLRRlAGGAMLA 201
                 77776514455544 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   2.8e-14   7.3e-11      22     123 ..     272     372 ..     264     373 .. 0.92

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 2.8e-14
                 HHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCH......HHHHHHHH-H.SSEEEE-TTSHHHHHTT-EETTTTECSCEEEE CS
    AhpC-TSA  22 dykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspe......shkkfiekeslnfpllsDeegkvakaygvlkeekglalratfv 114
                  +kgk+v++ f+++ +c  C++ lp  ++ +++++++g+ vigv + +         +++ +++ ++++p+++D+e ++ +a+g         ++a+++
  CTQ28238.1 272 RLKGKVVLVDFWTR-ECINCQHTLPYVRDWANKYRAAGLVVIGVHTPEYPwerslpLLRQAVKDWRITYPVVADNEYAIWNAFGNQ------YWPAHYI 363
                 579***********.*****************************9865556888878888889999********************......******* PP

                 E-TTSBEEE CS
    AhpC-TSA 115 idkegkiry 123
                 +d++g +ry
  CTQ28238.1 364 FDARGQLRY 372
                 *******99 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   7.1e-13   1.8e-09      24     134 ..     271     377 ..     250     391 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 7.1e-13
                 HHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHH......HHHHHHHTT-TSEEEE-TTSHHHHHTT-TTEEE.GGGEEE- CS
     Redoxin  24 sefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndaf......vkefwgkeglkfpvlsDgsaaftkalGlrleedaseglrtp 116
                 + +kgk+v+v f+++  c  C++ +py+++ a+++++ g  v++v + + +        ++++++  +++pv++D + a+  a+G +           p
  CTQ28238.1 271 ERLKGKVVLVDFWTR-ECINCQHTLPYVRDWANKYRAAGLVVIGVHTPEYPWerslplLRQAVKDWRITYPVVADNEYAIWNAFGNQ---------YWP 359
                 349************.*****************************9999999999999*******999*****************99.........999 PP

                 EEEEEEETTEEEEEEESS CS
     Redoxin 117 ryavidedgkvvylevep 134
                 ++ ++d+ g+++y+  ++
  CTQ28238.1 360 AHYIFDARGQLRYTAFGE 377
                 ************997665 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   4.5e-09   1.1e-05       1      94 [.     275     369 ..     275     370 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4.5e-09
                    .SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-.HHHHHHHGGGS-TTS.EE.EE-TT-HHHHTT-S--TT-SEEEEE-TT-B CS
  Thioredoxin_8   1 gkvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkk.eeefekylkknkkpw.lsvpfddkkrnklkkkynvkaiPtlvvldknge 94 
                    gkvvl+ f++ +c +c++ +p + +  +k++ + +++++ v+  +  +e     l++  k+w + +p+  ++ +++++ ++ + +P  ++ d  g+
     CTQ28238.1 275 GKVVLVDFWTRECINCQHTLPYVRDWANKYR-AAGLVVIGVHTPEYpWERSLPLLRQAVKDWrITYPVVADNEYAIWNAFGNQYWPAHYIFDARGQ 369
                    79****************************9.68998988888653255555555555567648899************************98886 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     7e-06     0.018      19      52 ..     276     310 ..     270     320 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7e-06
                  SEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT.TSE CS
  Thioredoxin  19 klvlveFyApwCghCkalaPeleklaeelkd.kvk 52 
                  k vlv+F+   C  C++  P + + a+++++  ++
   CTQ28238.1 276 KVVLVDFWTRECINCQHTLPYVRDWANKYRAaGLV 310
                  789**************************965444 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.1e-05      0.13       4      90 ..     274     367 ..     271     387 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.1e-05
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkel.ddvtvrvllfp.lkpsfepkavaiwcakekkkafkd.....ieenvelarkygvrgtPtivfldgk 90 
                    +gk vlv+f++ +C +C+     ++++ ++++   l +  ++    p  +++   ++ +k+++       + +++  +++g +  P+  ++d++
     CTQ28238.1 274 KGKVVLVDFWTRECINCQHTLPYVRDWaNKYRAAGLVVIgVHTPEYPWERSLPLLRQAVKDWRItypvvADNEYAIWNAFGNQYWPAHYIFDAR 367
                    79********************999997666665444446555556666666666666656655666666666666666666666666666666 PP

>> DUF2975  Protein of unknown function (DUF2975)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   1.8      0.55   1.4e+03      62      73 ..      68      79 ..      26     127 .. 0.61
   2 ?   10.8   0.4   0.00013      0.33      20      75 ..     156     207 ..      62     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.55
     DUF2975 62 iglaliaaalll 73
                 g+ l++a + l
  CTQ28238.1 68 AGRGLALAFFAL 79
                122222222222 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00013
     DUF2975  20 vlllgvlallafvvalvqlwkLlrsirkgevFspanvrrLrriglaliaaalllaa 75 
                 +l++g  ++l++++  ++  +L++++r+g++F +    rLrr+++ +++a++ l+a
  CTQ28238.1 156 LLAYGSGGALMLFLLGWCGAALITRLRRGQAFGE----RLRRLAGGAMLASVALIA 207
                 899999**************************87....688888887777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3058.75
//
Query:       CTQ28239.1  [L=447]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-20   73.5   0.0      3e-20   72.8   0.0    1.3  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    1.9e-05   24.6   0.6    6.1e-05   23.0   0.6    1.9  1  HisKA        His Kinase A (phospho-acceptor) domain
      6e-05   23.4   0.2    0.00032   21.0   0.2    2.4  1  HAMP         HAMP domain
    0.00065   19.5   0.0      0.001   18.9   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
  ------ inclusion threshold ------
      0.025   14.5   0.5       0.16   11.9   0.0    2.2  2  HATPase_c_2  Histidine kinase-like ATPase domain
        1.9    8.8  10.3       0.14   12.3   2.9    3.1  2  TetR_C_31    Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0     1e-23     3e-20       4     108 ..     328     431 ..     326     434 .. 0.91

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 1e-23
                 HHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE.TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTT CS
   HATPase_c   4 krLrqiisnlvdNavkfatkageieveikase.ddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepgr 100
                 + Lr+++ nl+dNa+kf   +++ +v+++++  +d+++ v D G+Gip++ l+++ ++f++ +ds++r++ggtGlGl+i+ +lv++m+G +++ ++p++
  CTQ28239.1 328 QALRRVMTNLIDNALKF---GTTATVTLTRDAvGDITLHVLDEGPGIPEASLQEVLQPFYRlEDSRNRDTGGTGLGLAIAAQLVSQMDGALRLANRPQG 423
                 579*************9...56778888854588************************************************9999***********99 PP

                 EEEEEEEE CS
   HATPase_c 101 Gttftftl 108
                 G +  ++l
  CTQ28239.1 424 GLDASVRL 431
                 98877665 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.6     2e-08   6.1e-05       2      56 ..     227     273 ..     226     296 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlve 56 
                 + r la ++H+L tP++ +++ +e+            e+ +++ +  + +++lv 
  CTQ28239.1 227 RARILAAISHDLQTPITRMKLRVEMADQ--------PELRDKLLQDLDNMTRLVR 273
                 6799*********************744........3444444444444444444 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.2   1.1e-07   0.00032       3      52 ..     171     221 ..     169     222 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.1e-07
                 HHTTHHHHHHHHHHHHHHT.TTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   3 arrilrPLrrLaraarria.aGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +r++l P+ r + a++++  a d   +  + g+ E+++ arafNaM+ r++
  CTQ28239.1 171 VRQVLLPISRFTHAVNALEpASDTAGTMAEQGPEEVRRAARAFNAMQARIH 221
                 799****************545888889999******************97 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.5e-07     0.001       5      83 ..     332     407 ..     328     411 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.5e-07
  HATPase_c_3   5 kAlaelvdNsld.AdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlklAsls 83 
                   +++ l+dN+l  +     ++++ ++   + ++ + D+G G++e+ l+++l++    ++  + ++++G  G+Gl  A+  
   CTQ28239.1 332 RVMTNLIDNALKfGTTA--TVTLTRDAVGDITLHVLDEGPGIPEASLQEVLQPFYRLED--SRNRDTGGTGLGLAIAAQL 407
                  67889******944444..55555555568999*******************9988888..479999******9888765 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.32   9.5e+02       5      23 ..     203     221 ..     199     235 .. 0.65
   2 ?   11.9   0.0   5.3e-05      0.16      39     110 ..     333     409 ..     328     417 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.32
  HATPase_c_2   5 pehvrtvrevaeavlrrag 23 
                  pe+vr ++++++a+ +r +
   CTQ28239.1 203 PEEVRRAARAFNAMQARIH 221
                  7889999999998855532 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 5.3e-05
  HATPase_c_2  39 actNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep........keslkegGrGlalikglvD 110
                  ++tN +  a + +++++v+++ +++ + +t+ v D+Gpg + + l++  +  p        + +    G+Gla+ ++lv 
   CTQ28239.1 333 VMTNLIDNALKFGTTATVTLT-RDAVGDITLHVLDEGPGIPEASLQEVLQ--PfyrledsrNRDTGGTGLGLAIAAQLVS 409
                  578889999999999999999.788899***********77776665544..3458888767777777888999888886 PP

>> TetR_C_31  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.9   4.8e-05      0.14      18      80 ..     235     300 ..     215     339 .. 0.77
   2 ?   -3.1   0.1         3   9.1e+03      72      82 ..     405     415 ..     399     438 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.8e-05
                 CTTHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHH...HHHHHHH CS
   TetR_C_31  18 ladrertlAryelfleaarrPeLraalarlrralrealaallaalGlpdpeeaarl...lvaaldG 80 
                  +d +  + r+ l++e a +PeLr+ l +  + + +++++  a +   +p e+ar+   l a+ld 
  CTQ28239.1 235 SHDLQTPITRMKLRVEMADQPELRDKLLQDLDNMTRLVREGIAFARTSQPLEEARQrlnLDAFLDT 300
                 446666789**********************99999999888855555565555543346666665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3
                 HHHHHHHHHHH CS
   TetR_C_31  72 rllvaaldGll 82 
                 ++lv  +dG+l
  CTQ28239.1 405 AQLVSQMDGAL 415
                 55556666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3094.98
//
Query:       CTQ28240.1  [L=246]
Description: Transcriptional regulatory protein OmpR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-32  112.0   0.2    2.5e-32  111.4   0.2    1.3  1  Response_reg  Response regulator receiver domain
    1.5e-19   69.9   0.3    2.7e-19   69.0   0.3    1.4  1  Trans_reg_C   Transcriptional regulatory protein, C terminal


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.2   2.8e-36   2.5e-32       1     112 []       7     118 ..       7     118 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 2.8e-36
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT.TTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed.pelpviiltahseeedavealkagadd 96 
                   +l+vdDd+++rel+ ++le++gy +   a++gk+++  lk++++dli+lDi+mpg dGl+l++++r+++ +++pv++lta+++++d++ +l++gadd
    CTQ28240.1   7 ILVVDDDRDIRELIVDYLEKSGY-RASGAANGKAMWSVLKNHQIDLIVLDIMMPGEDGLTLCRQLRANPqQDIPVLMLTARTDDSDRILGLEMGADD 102
                   8**********************.********************************************9899************************* PP

                   EEESSG-HHHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkale 112
                   +l Kpf  +eLl++++
    CTQ28240.1 103 YLIKPFVARELLARIK 118
                   ************9985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.3     3e-23   2.7e-19       4      77 .]     162     235 ..     158     235 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 3e-23
                  EE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   4 veltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  v+l+  e++lL+++l +p+rv+ r++Ll+   g+d +  +r++d  +srLR+ L++d+++p +I+tvr+ GY+l
   CTQ28240.1 162 VALSGAEYRLLRVFLDHPQRVLNRDQLLNLTQGRDAELFERSIDLLVSRLRQRLREDAREPAYIKTVRSEGYVL 235
                  789*********************************************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2025.65
//
Query:       CTQ28241.1  [L=330]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-18   66.1   0.1    6.2e-18   65.4   0.1    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
    7.1e-11   43.1   5.0    9.2e-11   42.8   5.0    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    5.3e-05   22.6   0.0    7.7e-05   22.1   0.0    1.2  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.046   13.4   0.2      0.076   12.7   0.2    1.3  1  Esterase       Putative esterase
      0.067   12.9   0.2       0.42   10.3   0.1    2.0  2  CHASE2         CHASE2 domain
        0.1   12.4   0.0       0.16   11.7   0.0    1.3  1  Abhydrolase_5  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.1   2.1e-21   6.2e-18       2     124 ..      59     186 ..      58     200 .. 0.87

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 2.1e-21
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                    ++++lhG+p    ++a+  +apaLa++g++vi++ lrG+g +++ +a+ + + +  ++a+d+  ++dal++++  l G+++G ++a  +aa+ p+r
     CTQ28241.1  59 PVILLHGWPYDIQSYAQ--VAPALAQKGYRVIVPYLRGYGTTRFLSASTPRNGQPSAMAADIVHLMDALNIRQADLAGFDWGARTADIVAALWPQR 152
                    8****************..****************************9885555556*************************************** PP

                    EEEEEEESE.......CSSCCHHHHHHHHHHHHH CS
  Abhydrolase_1  98 Vkalvllga.......idpaaslieaqrqqaksf 124
                    Vk+lv++++       i +++ + +a++ ++++f
     CTQ28241.1 153 VKSLVSVSGylissqqIGEKPLPPQAELSWWYQF 186
                    *********9766666666666666665555555 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   5.0   3.1e-14   9.2e-11       1     220 []      60     323 ..      60     323 .. 0.52

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 3.1e-14
                    EEEE--GC.....G....C.HHHHHHHHCCT.CEEEEE--TTST......S-GGCS--HHH.......CHHHHHHHCCTT..TTSEEEEEETCHHH CS
  Abhydrolase_6   1 vlllHGagssassW....l.vapLaallaag.vhvlapDlpGhG......rsdpppldled.......ladlaalldelaagggpvvlvGHSlGGa 77 
                    v+llHG       W    + +a++a++la+  ++v++p l+G+G       s+p      +       +ad+++l d+l    +++ l G ++G+ 
     CTQ28241.1  60 VILLHG-------WpydiQsYAQVAPALAQKgYRVIVPYLRGYGttrflsASTP------RngqpsamAADIVHLMDALN--IRQADLAGFDWGAR 140
                    79****.......76454278899777777779***********4444332222......133333357999*******6..*************9 PP

                    HHHHHHHCC......EE..EEES-...............----TTTS----TTHHHHHH..TT-C..........CCCHCCH..........S-HS CS
  Abhydrolase_6  78 lalaaapla....lvvg..vlldp.............pptalpagllaaalelllalla..llrl..........lawlsre..........plpr 132
                     a     +a    ++v+  v +++             p    p ++l+++ +++ a ++  +             + w+++           + + 
     CTQ28241.1 141 TADI---VAalwpQRVKslVSVSGylissqqigekplP----PQAELSWWYQFYFATPRgeA--GyrqnthdfakFIWHQASpqwqfsdatfAKTA 227
                    7777...3333364444366666654444444333322....33333333333333333220..12222222222444432111211111111111 PP

                    CCCCHHH..C....CCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEE.C...TT-CHHHHCHHCCCHSTTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 133 lfladed..a....daawrarlarlaallaglgllpaaawadlpvpllvl.g...geDplvprllerllaqagarlpvvlpgaGHlphleepdeva 218
                    + l+++d  a     ++wr  l  + a  ag ++ ++ a+++++vp+++l g   g+    p+ +++  +  +++  ++    GH p +e+p++++
     CTQ28241.1 228 RALDNPDhvAitisNYRWRLGLEKGEAKYAGYEQ-RLVALPPITVPTITLeGannGAPHPAPASYRAKFT-GKYEHRDLPGAVGHNPPQEDPTAFV 321
                    2233333321333344444444444444444443.47799999999988863232222244433444444.333331444588**88888**9999 PP

                    HH CS
  Abhydrolase_6 219 ea 220
                    +a
     CTQ28241.1 322 QA 323
                    75 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.6e-08   7.7e-05       7     129 ..      60     183 ..      56     232 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.6e-08
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse......gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllryp 98 
                  v+l+HG    ++ ya++a aLa++G+ v+    rG+G +       ++ g   + + + +D+  +++++  ++ +    l G  +G+ +a  +++  p
   CTQ28241.1  60 VILLHGWPYDIQSYAQVAPALAQKGYRVIVPYLRGYGTTRflsastPRNG---QPSAMAADIVHLMDALNIRQAD----LAGFDWGARTADIVAALWP 150
                  89*************************************98875544444...7788999999999998866655....5799999999999999999 PP

  Hydrolase_4  99 dkvaglilsaPalkikakl..kappllklllkl 129
                  ++v+ l+ ++  l   +++  k+ p ++ l+++
   CTQ28241.1 151 QRVKSLVSVSGYLISSQQIgeKPLPPQAELSWW 183
                  999999999888877777765333333334444 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   2.5e-05     0.076     119     188 ..     132     240 ..     118     242 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
                 EEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC......................................HCHHHCTTCCHHHCC-CCCCHC.HHC CS
    Esterase 119 vaGqSmGGlgALilalkhpdrFgsvssfSpivnps......................................namWgqeekeawqendpvllak.els 178
                 +aG+  G+ +A i+a+ +p+r +s  s S+++  s                                      + +++ + +++wq  d+++ +  ++ 
  CTQ28241.1 132 LAGFDWGARTADIVAALWPQRVKSLVSVSGYLISSqqigekplppqaelswwyqfyfatprgeagyrqnthdfAKFIWHQASPQWQFSDATFAKTaRAL 230
                 78888899999999******************999***********************************9997777788******9998776650455 PP

                 HTTSEEEEEE CS
    Esterase 179 aslkalriyl 188
                 ++ +++ i +
  CTQ28241.1 231 DNPDHVAITI 240
                 6777777765 PP

>> CHASE2  CHASE2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00014      0.42      18      72 ..      30      89 ..      10     168 .. 0.88
   2 ?    0.8   0.0      0.11   3.3e+02      47      75 ..     214     240 ..     193     330 .] 0.61

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00014
      CHASE2 18 elklyDlllrlrge..peiviVaIDeesla.e....grwpwsravlarllerLeaagakaig 72
                +  ++D  +++r+   + i +V+I  ++ +      g wp++ + +a++   L++ g ++i+
  CTQ28241.1 30 DAGAFDKIQQIRAGdlN-IGYVDIGPRDGQpVillhG-WPYDIQSYAQVAPALAQKGYRVIV 89
                45699**9999966666.********99985267855.**********************97 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.11
      CHASE2  47 grwpwsravlarllerLeaagakaiglDi 75 
                 ++w++s+a++a+  + L +  +  +++ i
  CTQ28241.1 214 PQWQFSDATFAKTARALDN--PDHVAITI 240
                 6799999999998888877..55555555 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.4e-05      0.16       2      32 ..      60      90 ..      59      93 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.4e-05
  Abhydrolase_5  2 lifYpGakveaesYaelaeklaksGyevvlv 32
                   +i+  G   +++sYa++a +la++Gy v++ 
     CTQ28241.1 60 VILLHGWPYDIQSYAQVAPALAQKGYRVIVP 90
                   788899999*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2718.68
//
Query:       CTQ28242.1  [L=339]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.8e-94  314.2   0.0    9.9e-94  314.1   0.0    1.0  1  Peptidase_M19  Membrane dipeptidase (Peptidase family M19)
    0.00042   20.2   0.0     0.0012   18.7   0.0    1.6  1  Amidohydro_2   Amidohydrolase


Domain annotation for each model (and alignments):
>> Peptidase_M19  Membrane dipeptidase (Peptidase family M19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.1   0.0   1.1e-97   9.9e-94       7     318 ..       2     334 ..       1     335 [. 0.98

  Alignments for each domain:
  == domain 1  score: 314.1 bits;  conditional E-value: 1.1e-97
                    .EEEEEE-HHHHHHHCTTTTT...-TTTHCTSSS-HHHHHHHTEEEEEEEEE--C...........CCCCCCHHHHHHHHHHHHHHHHHHGTTTEE CS
  Peptidase_M19   7 iviDghndlplklrqekkesl...llekdselqtdlerlraggvsavlfaifvpe...........dasyeeavkatleqidlirrlvrknpeqlk 88 
                     ++Dghndl+l+l+ + +e+    ++++ ++++ d++r+ +gg++++lfa+fvp+           + ++++ ++   +q++++++l+++++++l+
     CTQ28242.1   2 AIFDGHNDLLLNLWLHHREDPvsaFFAGIENGHLDYPRMLQGGFAGGLFALFVPPqeyiarmtpqyASQRWDPIDILWQQLAILKQLIAHSAGRLR 97 
                    68****************999999****************************9989*********999**************************** PP

                    E-SSHHHHHHHHHTT-EEEEEEEESCGGGTT-HHHHHHHHHTTEEEEES-SSS-BSSB-BCCGTT.....SSSSB-HHHHHHHHHHHHHT-EEE-T CS
  Peptidase_M19  89 lvrtaddierakkegkiavllgiegaealgddlallrafyalGvrvlgltynrnnkfAdgaleek....dedgGLsefGkelVrelNrlgiliDlS 180
                    l+ +a+dier +++  +a++ +iega  ++ +   l+afya+Gvr++g+ +n +n f++g+  +     d++ GL+++G +l++++N l++ +D+S
     CTQ28242.1  98 LCLSAADIERCREDKVLAMVAHIEGAGGFDGEGRDLQAFYAAGVRSIGPFWNIANRFGSGVNGSFpgspDTGPGLTAAGIDLIKQVNALKMQMDVS 193
                    **************************************************************9999****************************** PP

                    TB-HHHHHHHHHH-SSE.EECCEEBTTTS--TTSB-HHHHHHHHHTT-EEEE-SSHHHCTTT....S--BHHHHHHHHHHHHHHT-GGGEEE---T CS
  Peptidase_M19 181 hlsektfldvlelSkaPvvaSHSnaralcdhpRNltDeqlkaiaesgGvvgvtfvpaflkek....aeatledvvdhidyivelaGidhVGlGsDf 272
                    h++ek+f+d++  ++ P+va+HSna+alc++pRNltD+ql+ai++sgGvvgv+f +afl+ +    +++ l ++v+hidy+++++G+dhV+lGsDf
     CTQ28242.1 194 HMNEKAFWDTAHHATSPLVATHSNAHALCPQPRNLTDQQLRAIRDSGGVVGVNFGNAFLRADgrrdSDTPLTTIVRHIDYLINIMGEDHVALGSDF 289
                    ************************************************************99999999**************************** PP

                    TTTSS-BBTBSSGGGHHHHHHHHHHTTS-HHHHHHHHTHHHHHHHH CS
  Peptidase_M19 273 dgggelpegledvsklpnltaeLlrrgyseadiekilggNflrvle 318
                    dg++  p++l dv+ lp+l+++L++ gy++  ++k+l++N+lrvl+
     CTQ28242.1 290 DGITL-PDELGDVAGLPRLINTLRASGYDQLVLDKLLWRNWLRVLK 334
                    ****7.**************************************98 PP

>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.4e-07    0.0012     220     289 ..     258     333 ..     238     334 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.4e-07
                   SSEEECCHHCHHHHHHHHHHH-GGGEEEE--BTSTTSTSCTTHHHHCHHHHH......SSHHHHHHHHTHHHHHHC CS
  Amidohydro_2 220 llyfdspladppalarlieavgpdrilfGsDyPhptleaepealalldlval......lsdeerekilggNAarly 289
                   +++ +++ ++  +++ li++ g+d++  GsD+  +tl +e++++a l+++         ++ +++k+l+ N  r++
    CTQ28242.1 258 RDSDTPLTTIVRHIDYLINIMGEDHVALGSDFDGITLPDELGDVAGLPRLINtlrasgYDQLVLDKLLWRNWLRVL 333
                   3666777788899**********************************998889******************77776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2739.81
//
Query:       CTQ28243.1  [L=308]
Description: coenzyme PQQ synthesis protein B (Coenzyme PQQ synthesis protein V) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-44  152.2   0.1    1.5e-44  151.9   0.1    1.1  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9   0.1   8.5e-49   1.5e-44       2     201 .]      51     270 ..      50     270 .. 0.97

  Alignments for each domain:
  == domain 1  score: 151.9 bits;  conditional E-value: 8.5e-49
                    EEEES--TTHHHH..HTCGGS--S.SS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTT..TTEEEEEE-T CS
  Lactamase_B_2   2 riLiDagpdlrqq..alralqPve.lrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleee..pavnvheldw 92 
                    ++L++a+pd+ qq   ++ l+++  lr +  +i +++lt++++DH++gll+lre++p+  +++++++v+++l+++f+ + + ++  +++ +h++++
     CTQ28243.1  51 WVLCNASPDISQQiaHTPELNKAGvLRGT--HIGGIILTDSQIDHTTGLLSLREGCPH--QVWCTPEVHEDLSTGFPVFTMLRHwnGGLVHHPIAP 142
                    9************9999999777779999..**************************5..7*********************************** PP

                    TSEEEE.CSTTEEEEEEEE-EE--C....TCCE-TTTSEEEEEE..CTTEEEEEESS-S---HHHHHHHCT-SEEEEE-S-SSTTHHHH....... CS
  Lactamase_B_2  93 gesfel.gdggleitatparhksgr....rldrnagdtlGlrie..gggkrvyyigDtgyipeeigerlggadllllditayeddemir....... 174
                    +++f++ + ++l++ta+p+ +++++    r+++ +g +++l ie  ++g++++y++++g+ +e +  +l++ad+ll+d+t+++dde ++       
     CTQ28243.1 143 QQPFTVdACPDLQFTAVPIASNAPPyspyRDRPLPGHNVALFIEnrRNGQTLFYAPGLGEPDETLLPWLQKADCLLIDGTVWQDDELQAagvgrnt 238
                    ******9899***********************************99****************************************99******* PP

                    ..HHT---S...TSHHHHCTTSSSSEEEEESB CS
  Lactamase_B_2 175 ..hmgHltp...eeaveaaadlgakrlvliHi 201
                      +mgHl +    ++++++a l akr++liHi
     CTQ28243.1 239 grDMGHLALgdeHGMMALLASLPAKRKILIHI 270
                    *********99889*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2482.87
//
Query:       CTQ28244.1  [L=251]
Description: coenzyme PQQ synthesis protein C (Coenzyme PQQ synthesis protein I) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-69  231.7   0.2    8.7e-69  231.5   0.2    1.0  1  TENA_THI-4  TENA/THI-4/PQQC family
  ------ inclusion threshold ------
       0.08   12.9   0.0       0.16   12.0   0.0    1.4  1  Ecotin      Ecotin


Domain annotation for each model (and alignments):
>> TENA_THI-4  TENA/THI-4/PQQC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.5   0.2   9.8e-73   8.7e-69       2     209 ..      14     223 ..      13     224 .. 0.98

  Alignments for each domain:
  == domain 1  score: 231.5 bits;  conditional E-value: 9.8e-73
                 HHCHHHHHHHHC.SHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHCH.....HHHHHHHHHHTT-HHHH.H CS
  TENA_THI-4   2 aqlrpiwkeyin.HpFvkalakGtlpreqfqayviqdylylknfvrvlaiilskssdlevrrelesrivdhdgee.....ielhlrlaealGlsree.l 93 
                 ++lr+++++y+  Hp+++a+++G ++req+q++v+++++y+++++ ++a+i+++++d+++rr++ +ri+dhdg++     ie++lrl+ea+Glsr++ l
  CTQ28244.1  14 EALRAKGAFYHIhHPYHIAMHNGDATREQIQGWVANRFYYQTTIPLKDAAIMANCPDAQTRRKWVQRILDHDGSHgedggIEAWLRLGEAVGLSRDDlL 112
                 578999****988************************************************************************************** PP

                 CTTT--HHHHHHHHHHHHHHCHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHS-TSCHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHTSHHHH.HHHHHH CS
  TENA_THI-4  94 sktkpspatkayvrylldlarrgslaeavaallpclfvyqeiaerlkeklralegpeyyewvkeyaseefraaveeakrllerllakvsdeq.leelqe 191
                 s+++++p+++++v+++l++arr++++ea++++l++lf++q++++rl+++++      +y+w+ke+++ +fr+++++a+r++e++la ++  +  +e+q+
  CTQ28244.1 113 SERHVLPGVRFAVDAYLNFARRACWQEAACSSLTELFAPQIHQSRLDSWPQ------HYPWIKEEGYFYFRSRLSQANRDVEHGLALAKAYCdSAEKQN 205
                 ***************************************************......****************************************** PP

                 HHHHHHHHHHHHHHHHHT CS
  TENA_THI-4 192 iflkalefetsfltmald 209
                 ++l++l+f+ ++l+++ld
  CTQ28244.1 206 RMLEILQFKLDILWSMLD 223
                 ****************98 PP

>> Ecotin  Ecotin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.8e-05      0.16      48      90 ..      35      79 ..      28      87 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
      Ecotin 48 sGeleektlegw..gysyyvvkkakklastlmacpdeakkekFvs 90
                +G+ ++++++gw     yy+ +   k a+ + +cpd+++++k v+
  CTQ28244.1 35 NGDATREQIQGWvaNRFYYQTTIPLKDAAIMANCPDAQTRRKWVQ 79
                79999*******54555888888899999***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2069.99
//
Query:       CTQ28245.1  [L=92]
Description: Coenzyme PQQ synthesis protein D [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-14   53.9   0.1      2e-14   53.6   0.1    1.1  1  PqqD           Coenzyme PQQ synthesis protein D (PqqD)
  ------ inclusion threshold ------
       0.12   12.6   0.0       0.12   12.6   0.0    1.1  1  Flu_M1_C       Influenza Matrix protein (M1) C-terminal domai
       0.12   10.4   0.0       0.13   10.3   0.0    1.0  1  Lant_dehydr_N  Lantibiotic dehydratase, N terminus
       0.15   11.9   0.0        0.2   11.5   0.0    1.2  1  DUF4863        Domain of unknown function (DUF4863)


Domain annotation for each model (and alignments):
>> PqqD  Coenzyme PQQ synthesis protein D (PqqD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.1   4.5e-18     2e-14       2      67 .]      24      86 ..      23      86 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 4.5e-18
                EEEE-SS-..EEE--CHHHHHHHH-SSSS-HHHHHHHHHHHC.T--HHHHHHHHHHHHHHHHCTT-- CS
        PqqD  2 yvlldpetgkyisLnetgafiWklldgersveeivaalaeey.dvdeeeaeadvlafldqLrekgli 67
                +v+l+pe+  + +Lnet+a+i++l+dg+r+v++i+a l e++ ++    + +dv++fl++  ++++i
  CTQ28245.1 24 HVILYPEG--MAKLNETAAAILELVDGRRDVAAIIAMLNERFpEA--GGVDDDVIEFLQIACQQKWI 86
                8*******..********************************554..56************999997 PP

>> Flu_M1_C  Influenza Matrix protein (M1) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.7e-05      0.12      33      82 ..      30      79 ..       1      88 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.7e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Flu_M1_C 33 eqmagssekaeevqklaeelrqnvqvlrslGasqksseGlkkdllevlka 82
                e+ma  +e a+ + +l +  r+   ++  l     ++ G+ +d++e l+ 
  CTQ28245.1 30 EGMAKLNETAAAILELVDGRRDVAAIIAMLNERFPEAGGVDDDVIEFLQI 79
                89**9*****************999999*****9**************94 PP

>> Lant_dehydr_N  Lantibiotic dehydratase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.9e-05      0.13     118     178 ..       8      67 ..       4      91 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.9e-05
  Lant_dehydr_N 118 lyvrgdrlrlperavekegrayqevsvrateavravleaarepvtiaeLaerlaaefpeas 178
                    +++rg rl  + + +e +   y e   + +e  +a+le+++  + +a++++ l+++fpea 
     CTQ28245.1   8 AFRRGYRLQWEAA-QESHVILYPEGMAKLNETAAAILELVDGRRDVAAIIAMLNERFPEAG 67 
                    6788888888877.777777888889999*****************************874 PP

>> DUF4863  Domain of unknown function (DUF4863)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.5e-05       0.2       3      54 ..      39      90 ..      37      92 .] 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.5e-05
     DUF4863  3 iaellaeiedltldkeleerLneeygpgselyedlaklirqgveegWvaere 54
                +a++l+ ++++   +++ ++Lne++++   + +d+ + ++ + ++ W++ re
  CTQ28245.1 39 AAAILELVDGRRDVAAIIAMLNERFPEAGGVDDDVIEFLQIACQQKWITCRE 90
                677889999999999********************************98877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 721.46
//
Query:       CTQ28246.1  [L=380]
Description: coenzyme PQQ synthesis protein E (Coenzyme PQQ synthesis protein III) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-22   81.3   0.0    1.5e-22   80.8   0.0    1.2  1  Radical_SAM  Radical SAM superfamily
    1.3e-06   28.8   0.0    2.9e-06   27.7   0.0    1.6  1  SPASM        Iron-sulfur cluster-binding domain
    4.5e-06   27.0   0.0    7.6e-06   26.2   0.0    1.3  1  Fer4_12      4Fe-4S single cluster domain
    8.2e-06   25.9   0.5    1.6e-05   25.0   0.0    1.7  2  Fer4_14      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   3.3e-26   1.5e-22       3     166 ..      18     173 ..      16     174 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 3.3e-26
                  EESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpdeeklerllel 100
                   t  C+l+C++C++p +    +  ++l++e+ +e +++++  +g  ++ ++ggepl ++d+ el+++++ l   g+ + ++t+g+ ++e kl+++ e+
   CTQ28246.1  18 LTYRCPLQCPYCSNPLD--FARQDKELTTEQWIEVFRQAR-AMGSVQLGFSGGEPLTRKDLPELIRAARDL---GFYTNLITSGIGLTESKLDAFSEA 109
                  5789***********98..********************5.9****************************9...************************ PP

                  T-SEEEEEEBSSSHHHHHHHHT.CTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 101 gvdrvslgleaaddekvlklmn.rghtfeevlealeklreagikrvvdrivglpGendeeleellel 166
                  g+d+++++ +a d+      +   ++ f++ l+  ++ ++++ +  v + v+++  n ++l++++el
   CTQ28246.1 110 GLDHIQISFQASDEV-LNAALAgNKKAFQQKLAMAKAVKARDYP-MVLNFVLHR-HNIDQLDKIIEL 173
                  **************8.88888889********************.899999988.788889999887 PP

>> SPASM  Iron-sulfur cluster-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   6.4e-10   2.9e-06       1      68 []     245     310 ..     245     310 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 6.4e-10
       SPASM   1 C..fapsrslfInsdGdVvpCcvdkktyveelklGnireesleeIwnse.eyqefrkskkfplielCrnCp 68 
                 C   ++s  l ++++G+  pC   ++  + ++ + ++ e+sle+Iw ++  +++ r    + ++e+Cr+C+
  CTQ28246.1 245 CmgGWGSIFLSVTPEGTALPC---HSARQLPVAFPSVLEQSLESIWYDSfGFNRYRG--YDWMPEPCRSCD 310
                 733344555588999******...4445456***************8888******2..4445678****6 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.7e-09   7.6e-06      12     100 ..      19     102 ..      10     138 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.7e-09
     Fer4_12  12 vsgCnlsCkgCfnketwsfksgkeftkelleeiiedlkkesiegltllGGEPllpenaeallelvkevkeekpekdiwlytgytleels 100
                 + +C+l+C++C n+     ++ ke t+e   e+++++      +l ++GGEPl    +++l el++  +  ++  + ++++g  l e +
  CTQ28246.1  19 TYRCPLQCPYCSNPL-DFARQDKELTTEQWIEVFRQARAMGSVQLGFSGGEPLT---RKDLPELIRAARDLGF-YTNLITSGIGLTESK 102
                 679*********874.55566677777777789999999999************...9999999999999999.467777776666554 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   3.7e-09   1.6e-05       7      73 ..      21      81 ..      18     111 .. 0.80
   2 ?   -4.2   0.7         4   1.8e+04      12      20 ..     306     314 ..     305     320 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 3.7e-09
     Fer4_14  7 gCnlsCkgCdnketwkselgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkr 73
                +C+l+C+ C n  +++ + ++  te+ + ++++++ +  +   +l ++GGePL  ++   l +l++ 
  CTQ28246.1 21 RCPLQCPYCSNPLDFARQDKELTTEQWI-EVFRQARA--MGSVQLGFSGGEPLTRKD---LPELIRA 81
                8*********************999999.88844444..44466*********6655...5555544 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 4
     Fer4_14  12 CkgCdnket 20 
                 C+ Cd+ke+
  CTQ28246.1 306 CRSCDEKEK 314
                 999998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2880.84
//
Query:       CTQ28247.1  [L=761]
Description: Coenzyme PQQ synthesis protein F [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-37  126.2   0.0    2.2e-36  125.1   0.0    1.6  1  Peptidase_M16    Insulinase (Peptidase family M16)
    5.1e-05   23.4   0.0     0.0029   17.6   0.0    3.0  2  Peptidase_M16_C  Peptidase M16 inactive domain
  ------ inclusion threshold ------
      0.047   14.0   0.1        6.6    7.0   0.0    2.5  2  DUF5543          Family of unknown function (DUF5543)


Domain annotation for each model (and alignments):
>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.0   3.6e-40   2.2e-36       3     148 ..      17     153 ..      15     154 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 3.6e-40
                    EEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCH.HHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHS CS
  Peptidase_M16   3 alesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkyps.nklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfka 97 
                    +l+++p+a+++a+  +v+aGS++ep++++GlAHlleh++f g ++y++ ++l+ +++++Ggs+nAtt  ++ ++++ev++++l++ +++l+++++a
     CTQ28247.1  17 TLVHQPQADRAAALARVAAGSHHEPSRFPGLAHLLEHLLFYGGERYQDdDRLMGWVQRQGGSVNATTLARHSAFFFEVAADALADGVARLQEMLQA 112
                    689********************************************************************************************* PP

                    BTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS-T CS
  Peptidase_M16  98 plleesevererkvvekeveavdaepekvveenlhaaayrekalgrsllgp 148
                    pll +++++r       ev+++dae+   ++ ++h++ +re+a++++ ++p
     CTQ28247.1 113 PLLLREDIQR-------EVAVIDAEY---RLIQQHEPSRREAAVRHAASAP 153
                    **********.......*********...9999999999999999888776 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.9e-07    0.0029       6     171 ..     177     326 ..     175     336 .. 0.81
   2 ?    1.0   0.0     0.064   3.8e+02     112     157 ..     630     675 ..     611     688 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.9e-07
                      HHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHTTHHHH CS
  Peptidase_M16_C   6 dlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpskendeddlal 99 
                      dl +f++++Y + +m+l ++G  + e l +l+ ++  +l a +   a+p+ +pl   +++  +  +  ++         +++p +     +   
       CTQ28247.1 177 DLGDFHRTHYVARRMQLWLQGPQSLEALGELAARFATGLAAGE---APPPAPPLRLGEFTALQLAVSSQP-------ALWRCPLI---ALSDNV 257
                      7889************************************995...555555555555777777777777.......56777777...777778 PP

                      HHHHHHHHSSTTSHHHHHHHTTTTSESEEEEE.EEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS CS
  Peptidase_M16_C 100 avlntlLgggmesrLytnlrekeglaysvsaf.ndsyrdsglfgisatadpenveevvevilkelrklkkegl 171
                       +l + L++++ ++L   lr ++ la +v +  + ++r+ g++ + + +d  + eev   i   l++l+++  
       CTQ28247.1 258 TLLREFLLDEAPGSLMAGLR-QRRLAGDVALNwLYQDRHLGWLALVFASD--RPEEVDRQITHWLQALQQT-T 326
                      89999999999999999999.99999999999999999999999999888..6677777777777777776.4 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.064
                      SHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHH CS
  Peptidase_M16_C 112 srLytnlrekeglaysvsafndsyrdsglfgisatadpenveevve 157
                        ++++lr +++++y vs+      d   + +++++ ++++ e++ 
       CTQ28247.1 630 PLFFQRLRVEQQIGYVVSCRYQRVADRDGLLMALQSPDRRAGELLR 675
                      4589**************9966555555555666666666666555 PP

>> DUF5543  Family of unknown function (DUF5543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0086        52      57      92 ..     495     532 ..     466     545 .. 0.80
   2 ?    7.0   0.0    0.0011       6.6      69      89 ..     564     584 ..     549     599 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0086
     DUF5543  57 qinlemp..nsrattelawvcrsltlstaplspppslv 92 
                 q+ l++p    r  + l  + r l+l  a l+ppp  +
  CTQ28247.1 495 QLTLQLPepGRRPEAILQAILRQLALPVASLTPPPESI 532
                 5555554115678888999***************9766 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0011
     DUF5543  69 telawvcrsltlstaplsppp 89 
                  +  wv+r l+l tap++pp 
  CTQ28247.1 564 EDAQWVARQLSLITAPVNPPM 584
                 4668**************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 5737.33
//
Query:       CTQ28248.1  [L=245]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-18   65.9   0.0    8.4e-18   64.8   0.0    1.5  2  GATase         Glutamine amidotransferase class-I
    3.9e-08   33.3   0.4    1.9e-07   31.1   0.4    1.8  1  Peptidase_C26  Peptidase C26
  ------ inclusion threshold ------
      0.034   13.8   0.0      0.046   13.3   0.0    1.2  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   1.4e-21   8.4e-18      58     175 ..      77     192 ..      46     205 .. 0.86
   2 ?   -2.2   0.0      0.48   2.9e+03     170     187 ..     217     234 ..     215     236 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 1.4e-21
                 TTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEEEEEEEEEEETTT....CGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTE CS
      GATase  58 egkieaikearenkiPiLGICLGmQllaiefgrkvvkekekehhggtmrlgddet....allyglknevierhrHryevnpkelepaglevtaksedde 152
                 e + + i++a   ++P++G+C+G+Ql+a+++g++v      +   g++ ++  +      ll+gl+ ++ +  +H  +v++   +p+g +v+a+s++d 
  CTQ28248.1  77 ERTADWIRQAVAIDMPLFGVCYGHQLMAHALGGEVAYHP-GGRESGSQTITLSPWgvddPLLSGLPATFPAHLSHLQTVTR---LPEGATVLAASAHD- 170
                 667788999999************************666.5666666666664446688**********************...***********998. PP

                 EEEEEEEETTTEEEESSBTTSTT CS
      GATase 153 elmeiiekknpfvgvQFHPEsts 175
                   + i++    +v++QFHPE+t 
  CTQ28248.1 171 -PHQIVRYGPHAVSTQFHPEFTA 192
                 .7888877756**********86 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.48
                 BTTSTTSTTHHHHHHHHH CS
      GATase 170 HPEststpegpellfnfl 187
                 H E++ +p+g+++l +f+
  CTQ28248.1 217 HDEVQESPQGAAILTRFV 234
                 89***********99885 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.4   3.1e-11   1.9e-07      97     216 .]      82     189 ..      74     189 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 3.1e-11
  Peptidase_C26  97 LiraalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellg..seeievnslHhqaikelaeelrveAv 190
                     ir+a++ ++P++g+C G+ql++ alGG+++ +              ++  s+++++ + ++   ll+    ++     H q++++l e+  v A 
     CTQ28248.1  82 WIRQAVAIDMPLFGVCYGHQLMAHALGGEVAYHPGG-----------RESGSQTITLSPWGVDDPLLSglPATFPAHLSHLQTVTRLPEGATVLAA 166
                    5899************************99877663...........23347778887555544444223358999999***************99 PP

  Peptidase_C26 191 aeDgviEaieseeakafvlgvQwHPE 216
                    ++ +    ++       +++ Q+HPE
     CTQ28248.1 167 SAHDPHQIVRYGP---HAVSTQFHPE 189
                    9988777777776...469******9 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.8e-06     0.046      39      92 ..      55     107 ..      33     127 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.8e-06
    GATase_3  39 edadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeei 92 
                 ++  + +l G+   + d  +  e +++++i++a++ ++p++g+C G q++ + +
  CTQ28248.1  55 DNQTIAVLTGSWAMVTDRLAWSE-RTADWIRQAVAIDMPLFGVCYGHQLMAHAL 107
                 44567788888877766544444.699**********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2019.12
//
Query:       CTQ28249.1  [L=636]
Description: transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-78  264.3   0.1    1.7e-78  263.9   0.1    1.1  1  Transpeptidase  Penicillin binding protein transpeptidase dom
    6.2e-45  153.7   0.0    1.3e-44  152.7   0.0    1.5  1  PBP_dimer       Penicillin-binding Protein dimerisation domai


Domain annotation for each model (and alignments):
>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.9   0.1   1.9e-82   1.7e-78       2     306 .]     273     612 ..     272     612 .. 0.95

  Alignments for each domain:
  == domain 1  score: 263.9 bits;  conditional E-value: 1.9e-82
                     EEEEEETTT-BEEEEEEESE-TTTHHCC.............TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS... CS
  Transpeptidase   2 aavvldaktgevlamaskpsydpnakvg.............kneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqs.. 81 
                     a+vv+d+++g vlam+s+psydpn +v+             +++pl nr++q+ y+P+St+K+++a+ al agvi+p++t++  + +  +g++  
      CTQ28249.1 273 AVVVVDPRDGGVLAMVSSPSYDPNPFVKgigyqayksllenPDRPLINRVTQGLYPPASTVKPYMALSALSAGVITPNTTFFGAPTWTLPGTQrr 367
                     89*********************************************************************************999999999889 PP

                     ECTCCCC-SSSSEE.EHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--.B--SSH.........HHHHHHHHTTT...S CS
  Transpeptidase  82 ikdweqdnkgsegi.tlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaG.vptrkw.........legatisfgiG...l 162
                     ++dw ++   + g+ ++++a+e+S +t+f+++a ++g d++  +l+kfg+G++tgidl +e aG +p r+w         ++g+tis+giG   +
      CTQ28249.1 368 YRDWLKTG--H-GMlNVTKAIEESADTFFYQVAFEMGIDRIHAWLSKFGYGQSTGIDLNEEYAGvLPSREWkqrvhkkpwYQGDTISVGIGqgyW 459
                     *******6..5.555*************************************************7777799************************ PP

                     BB-HHHHHHHHHHHHTTTEEE--BSEEEEEECTT.EEEESS-EEEEE.-S-HHHHHHHHHHHHHHHHCTTTTGCG..TCTTS--EEEEEEEEECS CS
  Transpeptidase 163 tvtplqlaqayaaiangGklvkPhlvkaivdpdg.vrkvkpkelnkl.pisketaekvkeglkgvvsrgsgtata..avegykvagKTGTAevag 253
                      +tp+q+++a++++ n+Gk+++Phl+ ++++ +  +r+++p +l +  + ++ ++  v++g++g +++++gt+++  +++ y++a+K+GT +v++
      CTQ28249.1 460 IATPIQMVKALTTLLNNGKVQDPHLLYSMKQGNHvERYQQPANLPQVgDPKSPYWGIVRNGMYGMANQPNGTGYKlfHTAPYQIAAKSGTSQVFS 554
                     *******************************9999999999987766155556777888************************************ PP

                     SSTTSEEEEEE.......EEEEEEEESTTS-SEEEEEEECTCSSSSSCCHHHHHHHHHHH CS
  Transpeptidase 254 kkgngkkegak.......iswfvgyapadnpkyavavlieqpkeaaggkaaapiakkile 306
                      k+n++++++        +++++ +ap+++pk+a+a+++e+++  ++g +a+p a++il+
      CTQ28249.1 555 LKQNQTYNAKMipvrlrdHIFYTLFAPYQHPKVAMALILENGG--GDGVVAGPTARAILD 612
                     *****999877********************************..************986 PP

>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   0.0   1.4e-48   1.3e-44       2     177 ..      65     238 ..      64     241 .. 0.96

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 1.4e-48
                 .EE----EE-TTS-EEEEEEEEEEEEEEESSS-HHHHHHHHHHHHHHCHHHTTS-HHHHHHHHCCCCTSSTTSCECCCCCEECHHHCCCHHHHHCSTT- CS
   PBP_dimer   2 ipapRGeIyDrngrlLAtnrpsytltitpsklkkkkalekikklaklleseenldderleelalkknsykaykpvviaediseeevarikenakdlpGi 100
                 i ++RG I+Drng +L++n + y+l+++psk+++  al  +++l  +++    l+++++      +   ++yk v++++d+s+ evar++ n+ ++pG+
  CTQ28249.1  65 IAPSRGLIFDRNGIPLVQNITLYRLQVIPSKIPDMAAL--LQQLTPIVD----LTPDDIASFRDDMHHTSRYKAVTLKSDLSDVEVARFAVNEFRFPGV 157
                 6899********************************99..999999997....99999999999*********************************** PP

                 EEEEEEEEEETTTSTTHHHH-EEEEC-HHHHHCCCCH....TCCTTCEEEESHHHHHTHHHHHECCCEEEEEEECTSSCCE CS
   PBP_dimer 101 nievepkRyYpkgelaahvlGyvgkiteeelekykek....gyssgdliGksGlEkqyEeeLrGkkGkrqvkvdarGrile 177
                 ++e  ++R Yp+g+ +ahv+Gyv+ki++ +l++  ++    +y ++ +iGk+G+E++yE+ L+G+ G+++v+vd++Gr+++
  CTQ28249.1 158 TVESYQQREYPYGAELAHVVGYVSKINDSDLQRLAKNgeeeNYAADRNIGKQGIEGYYEKALHGTTGYQEVEVDNHGRVVR 238
                 ********************************999989999*************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4516.57
//
Query:       CTQ28250.1  [L=158]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-34  117.3  21.0      7e-34  117.1  21.0    1.0  1  DMT_YdcZ  Putative inner membrane exporter, YdcZ


Domain annotation for each model (and alignments):
>> DMT_YdcZ  Putative inner membrane exporter, YdcZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.1  21.0   3.9e-38     7e-34       2     139 .]       5     140 ..       4     140 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.1 bits;  conditional E-value: 3.9e-38
    DMT_YdcZ   2 llllallaGallalqaaiNaqLgkklgsplaAalvsflvGlivllllllllrksaalaalksvpwwallGGllGavfvtlnillvpklGaaltvvlvll 100
                 +++lal++Gall++qaaiN++Lg+++g +l +a+++f++G++v+ ll+l++  + +  +l +vp+w+llG ++G+ ++++++l+v+++G+a+++v+v++
  CTQ28250.1   5 VIILALCGGALLSVQAAINGRLGSQVG-VLRSAFLTFATGALVTGLLILFFAPA-TSVNLLQVPKWQLLGAFCGVPYIVIMVLAVQRIGTATATVAVIF 101
                 689************************.************************86.8888999************************************* PP

    DMT_YdcZ 101 GqllaslliDhfGlfgvekrplsltrllGlllllaGvvl 139
                 Gql++slliD+fG++g    ++s++rl+++++l+++++l
  CTQ28250.1 102 GQLTMSLLIDNFGWLGNSTMAFSPARLAAVICLALALYL 140
                 **********************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1266.09
//
Query:       CTQ28251.1  [L=144]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-31  108.9  15.8    2.7e-31  108.7  15.8    1.0  1  DMT_YdcZ  Putative inner membrane exporter, YdcZ


Domain annotation for each model (and alignments):
>> DMT_YdcZ  Putative inner membrane exporter, YdcZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7  15.8   1.5e-35   2.7e-31       1     139 []       4     140 ..       4     140 .. 0.98

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 1.5e-35
    DMT_YdcZ   1 lllllallaGallalqaaiNaqLgkklgsplaAalvsflvGlivllllllllrksaalaalksvpwwallGGllGavfvtlnillvpklGaaltvvlvl 99 
                 l++ll +++G+ l+++a + + L++++g  l+A++  f++G++++++l+l+++ + +  ++ s+p w+l+GGllGa +v++ ++++p +G+a+t++ +l
  CTQ28251.1   4 LFILLVIAGGMGLSVEAGLLGPLASQVG-DLWATMSIFGIGAVLTFFLMLFFSPR-SSPSFFSLPGWQLTGGLLGAGYVVILTMATPVIGIAMTMIGIL 100
                 6899************************.************************97.99999************************************** PP

    DMT_YdcZ 100 lGqllaslliDhfGlfgvekrplsltrllGlllllaGvvl 139
                 +Gq++ sl+iDh+Glfg+++r+++++r+++l+l++a+++l
  CTQ28251.1 101 AGQVAKSLAIDHYGLFGSPRRKIDPRRAMALMLIMAALLL 140
                 ***********************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1161.08
//
Query:       CTQ28252.1  [L=310]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-35  121.6   0.2    4.7e-35  120.8   0.2    1.4  1  LysR_substrate  LysR substrate binding domain
      1e-17   63.8   0.1    1.9e-17   63.0   0.1    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.075   12.8   0.0       0.16   11.8   0.0    1.5  1  HTH_38          Helix-turn-helix domain
      0.084   12.4   0.0       0.14   11.7   0.0    1.3  1  HTH_24          Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.2   1.1e-38   4.7e-35       2     207 ..      93     301 ..      92     303 .. 0.93

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 1.1e-38
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gep 95 
                     + ++g +ri ap ++++++++p+l++++ar+P+++++l  +d  +++d  ++   D+ +r   ++d+g++ar++++++++l asp++   r g p
      CTQ28252.1  93 QVPGGLVRINAPVYFGQRHIAPWLPELAARHPKLQFDLMLTD--DFIDPHRDA-TDILFRISSLPDAGYHARVFGSQRYYLTASPEY-VSRyGSP 183
                     6789**************************************..****99999.*********************************.9999*** PP

                     ECGGGGCTSEEEEESTTST.HHHHHHHHHHCT.TEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESST.....TCEEEE CS
  LysR_substrate  96 vsledLadeplilleegsg.lrdlledalrea.glkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpep.....plprel 183
                     +s+e+L++++ +++  + g +r+l+++  ++    ++++ +++n+++all  +  G+Gi l p+++v+++l +g lv   ++ +       p+ +
      CTQ28252.1 184 TSPEALHQHRTLVYGGSQGaNRWLFRQREEAWvHYPLTPLMTSNNADALLTSAIGGMGIVLFPDWMVSEALHNGTLV-TLMDRYsaaisHTPSYI 277
                     **************98888788888888666655555****************************************.77777779996666*** PP

                     EEEEETTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 184 ylvyrkgrelspavrafidflrea 207
                     +++y+  r++s  vr++id+++++
      CTQ28252.1 278 AAIYPYTRHPSLNVRTVIDYFADV 301
                     *******************99876 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.1   4.1e-21   1.9e-17       1      60 []       9      68 ..       9      68 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 4.1e-21
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                +r+l+lf+av +++sf+  A++ g+s++ +sr i++LE++lg++Lf R++r +++TeaG+
  CTQ28252.1  9 FRALQLFIAVYDNQSFSVVARREGVSPSLISRTIQQLEDALGQQLFYRNTRAVVPTEAGR 68
                689********************************************************7 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.5e-05      0.16      19      42 ..      20      43 ..      13      45 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.5e-05
      HTH_38 19 eGlslreIArrLgrspsTIsRElk 42
                 + s++ +Arr g+sps IsR ++
  CTQ28252.1 20 DNQSFSVVARREGVSPSLISRTIQ 43
                578999***************886 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.2e-05      0.14      18      43 ..      22      47 ..       7      48 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.2e-05
      HTH_24 18 isqreLAerlglSpstvnrrlkrLee 43
                 s + +A+r g+Sps ++r +++Le+
  CTQ28252.1 22 QSFSVVARREGVSPSLISRTIQQLED 47
                678899*******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2266.89
//
Query:       CTQ28253.1  [L=725]
Description: catalase/hydroperoxidase HPI(I) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-83  278.7   0.0    8.7e-46  156.4   0.0    2.2  2  peroxidase  Peroxidase


Domain annotation for each model (and alignments):
>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   0.0   4.9e-50   8.7e-46      10     229 .]      83     396 ..      74     396 .. 0.86
   2 !  120.3   0.1   5.4e-39   9.7e-35       3     227 ..     403     698 ..     401     700 .. 0.89

  Alignments for each domain:
  == domain 1  score: 156.4 bits;  conditional E-value: 4.9e-50
                 CC........TTTHCHHHHHHHHHHHTT.......SSTTSCHHHTCCHHCSGGGTTTHHHHHHHHHHHHHCTT.....S-HHHHHHHHHHHHHHCTT-- CS
  peroxidase  10 ka........drdmgpsllrlafhdcfv.......gGcdgsvlllepektapaNaslrkgldvldaikakleaacpgvvScADlialaardavelaggp 93 
                 ++        ++++ + ++r+a+h +++       gG+  + ++++p +++p+N sl+k++++l+++k+k++++    +S+ADl++la+++a+e+ag  
  CTQ28253.1  83 TDsqewwpadWGSYIGLFIRMAWHGAGTyrtvdgrGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPVKQKYGQK----ISWADLYMLAGNVALENAGFR 177
                 444444444678888899****************99************************************95....********************* PP

                 ..--EE---S-SSGGG.S-S...................................-.....-TS-HHHHHHHHHHHT--HHHHHHH.HGGGGC-EESHH CS
  peroxidase  94 lvpvslGRrDatessa.sev.snl...............................P....dptasvdelrdkfarkgltdeelvaL.sGaHtiGkahcs 154
                 ++ +  GR+D +e++  +++ +                                 P    +p + ++++r++f ++ ++dee+vaL +G+Ht+Gk+h++
  CTQ28253.1 178 TFGFGAGREDVWEPDLdVDWgD-EkewlahrhpeslakqaigatemgliyvnpegPnasgEPLSAAAAIRATFGNMAMDDEEIVALiAGGHTLGKTHGA 275
                 99**************9***54.358******999999999988888888886663777788888889*****************************98 PP

                 ................SS-GGGT........HHS..............EETS-STHHHHHHCC..................................T- CS
  peroxidase 155 sfs.rlya....aadpaldaayaae....kCasgnte......lvdldtptkfdnsyfknlle..................................kr 204
                   +  + a    a+ +a++ ++ ++    + a    +      +v ++tpt+++n +f+nl++                                  k 
  CTQ28253.1 276 AETsHVGAepeaAPLEAQGLGWHSSygsgAGAD---AitsgleVVWTQTPTQWSNYFFENLFKyewvqtrspagaiqfeakdapeiipdpfnpekkrKP 371
                 666544435666666777888887765322222...244467677777*************************************************** PP

                 EEEHHHHHHHHSCCCHHHHHHCCC- CS
  peroxidase 205 gllrsDqvllsdsetralvekyaes 229
                 ++l +D+ l  d+e++++ +++ ++
  CTQ28253.1 372 TMLVTDLTLRFDPEFEKISRRFLND 396
                 ********************99875 PP

  == domain 2  score: 120.3 bits;  conditional E-value: 5.4e-39
                 HHHHHCCCC.TTTHCHHH.........HHHHHHH......................................HTT........SSTTSCHHHTCCHHCS CS
  peroxidase   3 afvkaalka.drdmgpsl.........lrlafhd......................................cfv........gGcdgsvlllepekta 45 
                 af++a++k  +rdmgp+          ++l+++d                                      +          gG++g++l l+p+k++
  CTQ28253.1 403 AFARAWFKLtHRDMGPKSrylgpevpkEDLIWQDplpaathqpsaediaslksaiagaglsvselvsvawasA-StfrggdkrGGANGARLALAPQKDW 500
                 799*************777779999************************999999998888888877766551.056799999**************** PP

                 GGGTTTHHHHHHHHHHHHHCTT.....S-HHHHHHHHHHHHHHCT....T--...--EE---S-SSGGG.S-S.................-.-TS-HHH CS
  peroxidase  46 paNaslrkgldvldaikakleaacpgvvScADlialaardavela....ggp.lvpvslGRrDatessa.sev.snl.............Pdptasvde 124
                 p Na  +++l +l+ai+++ ++      S+AD+i+la+ ++ve+a    g    vp+++GR Da+ +++ +e+ + l             ++ + s+++
  CTQ28253.1 501 PVNAIASRVLPTLQAIQRASGK-----ASLADIIVLAGVVGVEQAaaaaGVSvNVPFTPGRVDALPEQTdVESfD-LlqpladgfrnyrrIEGGVSTET 593
                 ****7777*************9.....6****************88886666677**************888844.35866666666555588999999 PP

                 .HHHHHHHHT--HHHHHHH.HGGGGC-EESHH...........SS-GGGT....HHS........EETS-STHHHHHHCC................... CS
  peroxidase 125 .lrdkfarkgltdeelvaL.sGaHtiGkahcssfsrlyaaadpaldaayaaekCasgntelvdldtptkfdnsyfknlle................... 202
                  l+dk+++++lt++e+++L +G++++G+++                          g+++ v++d+ + ++n++f+nll+                   
  CTQ28253.1 594 lLIDKAQQLTLTAPEMTVLvGGLRVLGANYD-------------------------GSKHGVFTDRVGVLSNDFFVNLLDmatvwkaaddnaelftgsd 667
                 9*****************************2.........................34447999*99******************************** PP

                 ......T-EEEHHHHHHHHSCCCHHHHHHCC CS
  peroxidase 203 ......krgllrsDqvllsdsetralvekya 227
                       k  ++r+D+v++s+s +ral+e+ya
  CTQ28253.1 668 rktgeaKYSATRVDLVFGSNSVLRALAEVYA 698
                 ******************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 5482.41
//
Query:       CTQ28254.1  [L=353]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-86  290.3   0.1    2.3e-86  290.0   0.1    1.1  1  AFG1_ATPase  AFG1-like ATPase
    1.2e-05   25.8   0.4      0.018   15.4   0.0    2.7  2  AAA_16       AAA ATPase domain
    8.7e-05   22.0   0.0       0.11   11.9   0.0    3.1  3  TniB         Bacterial TniB protein
  ------ inclusion threshold ------
       0.06   13.6   0.0       0.32   11.3   0.0    2.2  2  AAA_22       AAA domain


Domain annotation for each model (and alignments):
>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.0   0.1   5.1e-90   2.3e-86      57     353 ..      57     349 ..      15     353 .] 0.91

  Alignments for each domain:
  == domain 1  score: 290.0 bits;  conditional E-value: 5.1e-90
  AFG1_ATPase  57 ksvepvrglYlwGgvGrGKtylmdlffeslpvekkrrvhfhafmarvhdeltklrkekdplaivadrlaeearvlCfDEfevsDiadamllsrLleaL 154
                   ++  ++g+Y+wG  GrGK++++d ff slp++ +rrvhfh+f++++h++l++       l+ v+ +++  +r+lCfDEf+++D++daml+  Lle L
   CTQ28254.1  57 STTGRPQGVYVWGRTGRGKSFILDHFFASLPLAARRRVHFHHFFRELHQRLNAPG--APDLQTVMRQMTSGCRLLCFDEFHLHDPGDAMLIKALLEHL 152
                  356679*********************************************9876..677************************************** PP

  AFG1_ATPase 155 fargvtlvaTSNiaPedLykdglqrqrFLpaIdlleshlevlevdggvDYRlrklrqaevylapldeaaeaaldklfkeltsgepeaestlevkaRkl 252
                  f+ g++l aTSN++Pe L++++l+++rFLp I+l++ hl+v++++g+ DYR r+l+q +++ +       +a ++ + +l  + p + ++l+v  R+l
   CTQ28254.1 153 FQHGIVLLATSNYPPEMLLPNPLYHDRFLPSIALIRAHLTVVALNGEEDYRERHLSQDNAFCSGRMWVNPNAQQRQLYDLP-SLPGEPVSLTVGYRTL 249
                  ***********************************************************9998877777777777777764.66777899******** PP

  AFG1_ATPase 253 rvraaagdlvrfsfaelceaarsqsdYlalaerfhtvlledVpvltkakedaarRfiaLvDelYdadvklvvsaevaleelyeagrlefefeRtaSRL 350
                   + aa   l++f+f++lc+aa++++dYl+l e +  +ll++Vp+l+++  +a++Rfi+ +D lY+++++l++     le l+ + +le + +Rt SRL
   CTQ28254.1 250 LAAAASPALLHFTFTQLCQAATAVMDYLTLCESYAIWLLDEVPPLATVGPAAQQRFINVIDVLYEKQIRLLLVTRCDLETLVAGVELE-DIQRTRSRL 346
                  ********************************************************************************99999886.8******** PP

  AFG1_ATPase 351 lel 353
                  ++l
   CTQ28254.1 347 QQL 349
                  *98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     4e-06     0.018      14      51 ..      54      89 ..      44     113 .. 0.71
   2 !    7.3   0.1    0.0013       5.9     129     164 ..     121     154 ..     114     160 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4e-06
      AAA_16 14 salervrsgrpelvllsGesGvGKsslvrellralekd 51
                ++++   +grp+ v++ G  G GKs ++++++ +l  +
  CTQ28254.1 54 QLVS--TTGRPQGVYVWGRTGRGKSFILDHFFASLPLA 89
                4444..56899*********************977654 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0013
      AAA_16 129 llsrderplvlvlDdlqwadeaslqllaaLlrlles 164
                 ++++ +   +l++D+++  d+++++l++aLl+ l +
  CTQ28254.1 121 QMTS-GC-RLLCFDEFHLHDPGDAMLIKALLEHLFQ 154
                 4444.33.69*********************98755 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   2.4e-05      0.11      20      60 ..      45      87 ..      37      97 .. 0.80
   2 ?    3.2   0.0     0.011        49     109     139 ..     116     145 ..      88     153 .. 0.64
   3 ?    3.0   0.0     0.013        58     109     151 ..     271     314 ..     241     326 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.4e-05
        TniB 20 lerLeeLley..pkrkrmpnlllvGdsnnGKtmivekFarlhp 60
                ++rL++L +    +  r++ ++++G++  GK+ i+++F ++ p
  CTQ28254.1 45 IARLDALGQQlvSTTGRPQGVYVWGRTGRGKSFILDHFFASLP 87
                66777777663345789*********************87655 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.011
        TniB 109 qqvlrllrelkvrvLiiDEihnllagsarkq 139
                 q v+r + + + r+L +DE+h    g a   
  CTQ28254.1 116 QTVMRQM-TSGCRLLCFDEFHLHDPGDAMLI 145
                 3333443.4689*********7776666555 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.013
        TniB 109 qqvlrllrelk.vrvLiiDEihnllagsarkqreflnalksLgn 151
                  +v+ +l  ++   + ++DE+  l +    +q++f+n++  L +
  CTQ28254.1 271 TAVMDYLTLCEsYAIWLLDEVPPLATVGPAAQQRFINVIDVLYE 314
                 445555555542467899********************988865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     7e-05      0.32       8      70 ..      65     132 ..      59     162 .. 0.65
   2 ?   -2.1   0.0      0.98   4.4e+03      91     130 ..     282     324 ..     251     331 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv........fvtlpsstsskdllrellralglelka 70 
                 ++v+G +G GK++ l  ++ +l+ +   +++r+++         + ++p+  ++++++r++ +   l + +
  CTQ28254.1  65 VYVWGRTGRGKSFILDHFFASLPLA---ARRRVHFHhffrelhqRLNAPGAPDLQTVMRQMTSGCRLLCFD 132
                 79********************754...4423333233344556666666667777777777776666666 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.98
      AAA_22  91 vielliiDEaqhlr...seealeeL..rsllnlsrkgvqliLvGt 130
                   ++ ++DE+  l    ++++ +++   + l   +k+++l+Lv  
  CTQ28254.1 282 SYAIWLLDEVPPLAtvgPAAQQRFInvIDVL--YEKQIRLLLVTR 324
                 3667778888777654322222222112333..367777777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2678.52
//
Query:       CTQ28255.1  [L=226]
Description: Protein MgtC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-38  131.7  10.7      3e-38  130.9  10.7    1.4  1  MgtC      MgtC family


Domain annotation for each model (and alignments):
>> MgtC  MgtC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9  10.7   1.7e-42     3e-38       1     119 [.       9     128 ..       9     130 .. 0.96

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 1.7e-42
        MgtC   1 LllAlllGlliGleRelrekaaGlRTfaLvalgaalfvllslelae...srvaaqvvsgigflgagvilkekegakvkglTTaaslwvtaaiGllvglg 96 
                 Ll+A+llG+liG+eR++r+++aGlRT+aLva gaa+f+l +++++     r+aaq+vsgigflgagvi+  ++g +v+gl+Taa+lw++a+iG+l+glg
  CTQ28255.1   9 LLAAMLLGALIGAERQWRQRMAGLRTNALVATGAAVFILSAMSASPdspGRIAAQIVSGIGFLGAGVIM--RDGMNVRGLNTAATLWCSAGIGVLCGLG 105
                 789*************************************88876699*********************..9999************************ PP

        MgtC  97 lyllavvatvlvllllallrele 119
                 +++ a++at+++l++++llre  
  CTQ28255.1 106 QFWNATAATLIILCANILLREAA 128
                 ******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1703.94
//
Query:       CTQ28256.1  [L=78]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 604.35
//
Query:       CTQ28257.1  [L=468]
Description: Transporter, MFS superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-33  114.2  32.1    8.3e-33  113.9  32.1    1.1  1  Sugar_tr  Sugar (and other) transporter
    6.3e-29  101.0  49.6    5.5e-21   74.9  27.5    2.2  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.6    8.0  31.6      0.011   15.0  10.1    2.1  2  MFS_4     Uncharacterised MFS-type transporter YbfB
        8.4    6.1  21.7        1.1    9.0   9.6    2.5  2  UNC-93    Ion channel regulatory protein UNC-93


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9  32.1   1.9e-36   8.3e-33       4     448 ..      41     468 .]      38     468 .] 0.85

  Alignments for each domain:
  == domain 1  score: 113.9 bits;  conditional E-value: 1.9e-36
                 HHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS- CS
    Sugar_tr   4 vaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsv 102
                 + +lgg+ + Yd++  g++++ l +   f+  ++     +   ++ +++s+++ G +iG+ ++ +l+d++GR+ ++++a + +   ++l+a+     s 
  CTQ28257.1  41 LLSLGGFFELYDLFQTGYISAGLLAEGIFHTGQAGIFGIA---DQAAFASATFMGLFIGASLLAPLADKLGRRLTFMVALAWYGLFSLLMATQS---SA 133
                 6688999999998888888887775555555555555554...899**********************************************99...99 PP

                 TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH..HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHH CS
    Sugar_tr 103 evlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl..nktsnadgwrillglqlvpallllilllflPESPrylv 199
                 e +i+ R+lvGig+G++ v++ +y+sE  p++lR +   +  +   +     a + + l   +  + +gwr+ + + ++++l++ +++  lPES r+l 
  CTQ28257.1 134 EGVIFFRFLVGIGLGIELVTIDTYLSEWVPTHLRNKAFAFAFFIQFLSVPAVALMSWMLvpTTLFGLSGWRWVIIFGALFSLAIWFIRKKLPESARWLE 232
                 **********************************7766655555555555444444444233333469******************************* PP

                 HTT-HHHHHHHHHHHHHC..HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHH CS
    Sugar_tr 200 ekgkeeeakevlaklrge..edadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiiv 296
                 +kg++++a +v+ +++      ++++ a  ++s  +       + +e++   ++rqr+l+ +v+++fq   G + + +  p +++  g s +   ++++
  CTQ28257.1 233 SKGRHDDAHTVMCEMEARcgLTPSPKHAHAAQSVVKR-----GTFREIWAP-QYRQRTLMLMVMNFFQ-AIGFFGFGNWLPALLSGQGASIT--HSLLY 322
                 **************77765555666666666665555.....579999999.89***********997.5799***********99998877..89999 PP

                 HHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHH.HHHHHHSHTTTHHHHHHHHHHH CS
    Sugar_tr 297 gvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpw.vlvsElfpqsvRskalaiavav 394
                  +  ++a   + ++  rf  R    + ++  a+++vi+g  +l+  ++    +  ++  i+ f++  +  w ++ +  + +E+fp+++R+ a  +++  
  CTQ28257.1 323 AFFITLAYPLGCLFCTRFVHRFENKWQIVLSALMTVIFG--TLFALQN----NP-ILLVICGFMITWSNAWLTISYhAYQAEVFPTHIRARAVGFCYSF 414
                 9999999999999999999999999*************9..5555555....23.56667788888888998888735779****************** PP

                 HHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCC CS
    Sugar_tr 395 nwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleei 448
                 + l++ ++s+l+ ii++  g ++v  + ++ ++++++ v +f p t g  le i
  CTQ28257.1 415 SRLSTAVTSILIGIILQYAGTPGVISFIVVSMLMVMLSVGIFGPRTRGIRLENI 468
                 **************************************************9976 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9  27.5   1.2e-24   5.5e-21      36     279 ..      84     352 ..      31     353 .. 0.74
   2 !   39.8  17.2   5.5e-14   2.5e-10      39     174 ..     323     459 ..     314     466 .. 0.86

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 1.2e-24
       MFS_1  36 llltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslG 133
                   +++ + g ++++ +l++l+d++Grr +++++l++++l++ll++ ++s+   ++++r+l G+g g+ + ++ +++++w+p   r++a++++     l+
  CTQ28257.1  84 AFASATFMGLFIGASLLAPLADKLGRRLTFMVALAWYGLFSLLMA-TQSSAeGVIFFRFLVGIGLGIELVTIDTYLSEWVPTHLRNKAFAFAFFIQFLS 181
                 356778899*******************************55555.4777889*****************************99999999999966666 PP

       MFS_1 134 ailgpllgglla..sslg...Wravfyilaivsllafvlfllll..peepperkrkspkeee....................kgtgpaplvp......a 199
                 +   +l + +l+  +++g   Wr+v ++ a++sl       +++    ++++r+ +s+ +                      +    a++++       
  CTQ28257.1 182 VPAVALMSWMLVptTLFGlsgWRWVIIFGALFSLAI-----WFIrkKLPESARWLESKGRHDdahtvmcemearcgltpspkH----AHAAQsvvkrgT 271
                 655544444444323333555****99999999997.....666225555555555555555999999999999998855552....333334445677 PP

       MFS_1 200 wkallkdpvl...willialllfffgfsglltllplylqevlglsglllaglllallalvgail.allagrlsdrlgrrrrlll 279
                 +++++++++    ++l+++ ++ ++gf+g+  +lp  l +  g s  ++ +ll+a++  ++ +l +l+++r+++r+ ++++++l
  CTQ28257.1 272 FREIWAPQYRqrtLMLMVMNFFQAIGFFGFGNWLPA-LLSGQGAS--ITHSLLYAFFITLAYPLgCLFCTRFVHRFENKWQIVL 352
                 7777777755433356666666668***********.5*******..3344344444444444459***********9999886 PP

  == domain 2  score: 39.8 bits;  conditional E-value: 5.5e-14
       MFS_1  39 tlyal..gaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGa 134
                 ++ ++  ++ ++ l+  r++ rf  ++ ++l++l+++++++l+++ ++ + ll+++ ++  +  ++l+ + +a+ a++fp   r+ra+g+ ++++ l++
  CTQ28257.1 323 AF-FItlAYPLGCLFCTRFVHRFENKWQIVLSALMTVIFGTLFAL-QNNPiLLVICGFMITWSNAWLTISYHAYQAEVFPTHIRARAVGFCYSFSRLST 419
                 33.222377777788889999******************788887.99999************************************************ PP

       MFS_1 135 ilgpllggllasslgWravfyilaivsllafvlfllllpe 174
                 +++ +l g++++++g ++v  ++ + +l++++ ++++ p+
  CTQ28257.1 420 AVTSILIGIILQYAGTPGVISFIVVSMLMVMLSVGIFGPR 459
                 *******************888888888887766666555 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0  10.1   2.5e-06     0.011      24     177 ..      76     228 ..      63     255 .. 0.85
   2 ?   -1.1  13.5       0.2     9e+02     200     358 ..     291     452 ..     253     457 .. 0.51

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.5e-06
       MFS_4  24 qlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrervgall 122
                  + +++ +  a+a ++G ++Ga l a  + +   Rl+ +++l    l  l ma  +s   ++  Rfl G++ ++ lv + +   + +  + r++  a+ 
  CTQ28257.1  76 IFGIADQAAFASATFMGLFIGASLLAPLADKLGRRLTFMVALAWYGLFSLLMATQSSAEGVIFFRFLVGIGLGIELVTIDTYLSEWVPTHLRNKAFAFA 174
                 5677888899***********9888788889999999999999999999******************************99999999999999999999 PP

       MFS_4 123 faGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalrea 177
                 f    l + + +l+ ++l+ + l + s W ++ ++ a+  l+++ +++ + ++ a
  CTQ28257.1 175 FFIQFLSVPAVALMSWMLVPTTLFGLSGWRWVIIFGALFSLAIWFIRK-KLPESA 228
                 99999*************************************999988.333333 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.2
       MFS_4 200 YglaGfGYiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllsllspsplglivssvllGltflaita 298
                  ++ ++G+     +l+a+   ++++     l+ + + la  +g+l  +r  +r +++  +++  l+ ++  +l  l + p++l++ + ++       t 
  CTQ28257.1 291 NFFQAIGFFGFGNWLPALLSGQGASITHSLLYAFFITLAYPLGCLFCTRFVHRFENKWQIVLSALMTVIFGTLFALQNNPILLVICGFMITWSNAWLTI 389
                 455555555555666666666555555555555666666666665555555555555555555555544444444444444444444444444444444 PP

       MFS_4 299 lvlqlarelappat.rrllglmTasfgigQilGpllasllaeatgslalall..vaaaalvla 358
                 +  ++  e+ p +   r++g+      +  ++  +l++++ +++g+    ++  v+  +++l+
  CTQ28257.1 390 SYHAYQAEVFPTHIrARAVGFCYSFSRLSTAVTSILIGIILQYAGTPGVISFivVSMLMVMLS 452
                 444444444444442444444433334555566666666655555433333211333333333 PP

>> UNC-93  Ion channel regulatory protein UNC-93
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   4.2     0.021        94      12     130 ..      58     174 ..      44     196 .. 0.72
   2 ?    9.0   9.6   0.00024       1.1      45     151 ..     325     432 ..     286     438 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.021
      UNC-93  12 fnsqefieesvieslaekspgkiekkaGYyslaiiyavftvanlvapsvvdlltakwalvigallyaifqlgFlllnky.ylyissallGvgaallwtg 109
                 + s ++++e + +  +      i  +a + s a+    f  a+l+ap + d+l+ +++ +++ + y +f l      ++  + +   l+G+g  +  + 
  CTQ28257.1  58 YISAGLLAEGIFHTGQAG-IFGIADQAAFAS-ATFMGLFIGASLLAP-LADKLGRRLTFMVALAWYGLFSLLMATQSSAeGVIFFRFLVGIGLGIELVT 153
                 555555555555544333.355666666655.566788888999887.799******************987765544324666688999999999999 PP

      UNC-93 110 qGsyLsenstretiernssil 130
                   +yLse +  + +++  ++ 
  CTQ28257.1 154 IDTYLSEWVPTHLRNKAFAFA 174
                 999999998877655554444 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00024
      UNC-93  45 iiyavftvanlvapsvvdlltakwalvigallyaifqlgF.lllnkyylyissallGvgaallwtgqGsyLsenstretiernssilwallksslliGg 142
                 +i +++ + +l+   +v+    kw +v++al+ +if   F l+ n ++l i   ++  + a l  +   y  e    + + r +++ ++ ++ s  + +
  CTQ28257.1 325 FITLAYPLGCLFCTRFVHRFENKWQIVLSALMTVIFGTLFaLQNNPILLVICGFMITWSNAWLTISYHAYQAEVFPTHIRARAVGFCYSFSRLSTAVTS 423
                 333456789***************************99996788889999999999********************************99999999999 PP

      UNC-93 143 iflilvfql 151
                 i++ ++ q 
  CTQ28257.1 424 ILIGIILQY 432
                 998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3543.96
//
Query:       CTQ28258.1  [L=104]
Description: N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-31  106.4   2.4    6.6e-31  106.2   2.4    1.0  1  PTS_IIA   PTS system, Lactose/Cellobiose specific IIA subunit


Domain annotation for each model (and alignments):
>> PTS_IIA  PTS system, Lactose/Cellobiose specific IIA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   2.4   3.7e-35   6.6e-31       2      93 ..       6      97 ..       5      98 .. 0.98

  Alignments for each domain:
  == domain 1  score: 106.2 bits;  conditional E-value: 3.7e-35
     PTS_IIA  2 iameiIlhaGeArslameAlkaakegdfeeaeellkeAeeelkeAhkaqteliqkeasgekvevslllvHAqDhLmtaellkdlakeliely 93
                ++me+I++aGe+rslam+Al+aa++g ++++++l+++A ++ k+Ah++qt li ++++  kv+v+l+lvHAqDh+mt++l+++l+ elie+ 
  CTQ28258.1  6 TVMELIINAGESRSLAMQALQAARKGVWQDVDRLMQDAADAAKRAHDVQTMLIGMDEGCGKVPVNLILVHAQDHIMTSMLARELIAELIEVQ 97
                68***************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 795.25
//
Query:       CTQ28259.1  [L=107]
Description: Cellobiose-specific phosphotransferase enzyme IIB component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-22   77.9   1.2    8.4e-22   77.7   1.2    1.0  1  PTS_IIB   PTS system, Lactose/Cellobiose specific IIB subunit


Domain annotation for each model (and alignments):
>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   1.2   4.7e-26   8.4e-22       1      89 [.       3      94 ..       3      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 4.7e-26
                EEEEEESSSHHHHHHHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEESSGG..CTHHHHTT...SEEEEECTTHHHCCHCHHHHHH CS
     PTS_IIB  1 killaCgaGmatSlmaaeklekaakelgieaegeagveleaeeiaddaDlvllapqvrv..kdlarfag...kpvavinikdalgimdgekvlk 89
                ki l+C+aGm+tS+++ +k+++aa ++gi + + a ++++ +    ++D++ll+pq+++  +++ ++a+   k+vavi+ +d +g+m g+k+l+
  CTQ28259.1  3 KIFLCCAAGMSTSMVM-NKMKQAAAAQGIAVDIIAVSMDDFDRTLPNYDCCLLGPQIKYkfEEFNKKAAavgKRVAVIDSMD-YGMMRGDKILA 94
                89**************.***********9999999998888888888************776666666678899********.********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 820.80
//
Query:       CTQ28260.1  [L=321]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-18   67.0   0.1    2.8e-18   66.5   0.1    1.2  1  Abhydrolase_3  alpha/beta hydrolase fold
    6.1e-14   52.0   0.7    2.1e-07   30.6   0.0    2.5  3  Peptidase_S9   Prolyl oligopeptidase family
    1.1e-09   37.7   0.1    6.7e-09   35.2   0.1    1.9  1  COesterase     Carboxylesterase family
    2.6e-06   26.9   0.0      0.051   12.8   0.0    2.2  2  Hydrolase_4    Serine aminopeptidase, S33
      0.001   18.7   0.2      0.023   14.2   0.0    2.6  2  DLH            Dienelactone hydrolase family
     0.0035   17.4   0.0     0.0082   16.2   0.0    1.6  1  Abhydrolase_4  TAP-like protein
     0.0099   15.4   0.3       0.75    9.2   0.1    2.7  2  Esterase_phd   Esterase PHB depolymerase
  ------ inclusion threshold ------
       0.03   14.0   0.1        1.1    8.8   0.0    2.2  2  Abhydrolase_1  alpha/beta hydrolase fold
       0.11   12.2   0.1       0.32   10.6   0.1    1.7  1  FSH1           Serine hydrolase (FSH1)


Domain annotation for each model (and alignments):
>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.1   1.4e-21   2.8e-18       2     208 ..      76     295 ..      75     298 .. 0.71

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 1.4e-21
                    EEE--STTTS--TTTT.HHHHHHHHHHHTSEEEEEE---TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT CS
  Abhydrolase_3   2 vyfHGGGfvlgsldth.dalcrelakelgavvvsvdYrlAPehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardeg 96 
                    v++ GGGf+   ++++      +  +++g+vv s+ Yr  P+  fP  veda +a+r l+++a++lg+dp++i+++G+SaGG laa v      ++
     CTQ28260.1  76 VFITGGGFLDA-PKSKfIGQRVD-IARAGYVVASITYRVVPNVTFPGMVEDAKTAVRFLRANAEKLGIDPNHIAVMGESAGGYLAAMVGTTSGHKE 169
                    56666666532.22221222223.3579************************************************************98877774 PP

                    ---..........EEEEEEESE-SST....SSTTSHHHHHCHHTTTSSSSC....HHHHHHHHHHHSSGGGGGSTTTSGGGCS-SST---EEEEEE CS
  Abhydrolase_3  97 epk..........vagqvliyPvtdl....ertesesikkaeeladgpllt....raaldlfwrlylpeadrddplaspllaedlsglpptlvvva 174
                                 v+++v +y + dl    +++ s++i   +++ + p+++     + + +     ++    +  +a+p+     +++pp l++ +
     CTQ28260.1 170 -FDqgeysnqssdVQAVVDLYGLSDLtkvgADF-SADI---QKAHQSPAIPeamlVNGIPWQGGGAISAYPEKAKRANPITW-ISNKTPPFLLMNG 259
                    .223578899999*********88884333333.2222...33344555541111333333333333333344557777744.45679*******9 PP

                    TT-TTH..HHHHHHHHHHHHTT--EEEEEETTEETT CS
  Abhydrolase_3 175 efDplr..degeayaerlraagvevelieyegmvHg 208
                    + D     +++  ++e+l a++ ++++ +++g+ H+
     CTQ28260.1 260 DADNVVspSQSTLLHEALVAKKIPSTHYVVKGADHA 295
                    9997662257778899999*************9997 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       3.2   6.3e+03      11      23 ..      99     111 ..      94     111 .. 0.81
   2 !   19.6   0.1   2.5e-07    0.0005      46      84 ..     123     165 ..     120     190 .. 0.76
   3 !   30.6   0.0   1.1e-10   2.1e-07     122     211 ..     232     318 ..     197     319 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.2
                   HCCT-EEEEE--T CS
  Peptidase_S9  11 adrGyvvvvanir 23 
                   a +Gyvv+ + +r
    CTQ28260.1  99 ARAGYVVASITYR 111
                   589****999887 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 2.5e-07
                   HHHHHHHHHH..HHTT.S--GGGEEEEEETHHHHHHHHHHH.H CS
  Peptidase_S9  46 dDfiaaaeal..akeg.yvdserlaitGgSyGGyltgaaln.q 84 
                   +D  +a+++l  ++e+  +d++++a++G S+GGyl++++ + +
    CTQ28260.1 123 EDAKTAVRFLraNAEKlGIDPNHIAVMGESAGGYLAAMVGTtS 165
                   566666666633333459*******************997744 PP

  == domain 3  score: 30.6 bits;  conditional E-value: 1.1e-10
                   TTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHHHHHHHHHHHHHHHCT- CS
  Peptidase_S9 122 eeneegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakveelarllaFlkealgk 211
                      +e+ k+++p++   n  ++pp+Ll+ G+aD+ v p++++ l +aL  k+ ++   + ++++H +    ++ e  + + +Fl+++l++
    CTQ28260.1 232 SAYPEKAKRANPITWISN--KTPPFLLMNGDADNVVSPSQSTLLHEALVAKKIPSTHYVVKGADHAGL-MWYQPEVSKIIINFLDQNLKD 318
                   45678889999999999*..*********************************************555.689999999999999999985 PP

>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.1   3.3e-12   6.7e-09      88     202 ..      59     161 ..      57     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 3.3e-12
                 -EEEEEEESSSSSTTSSEEEEEEE--STTTS-BGCG.S-THHHHHHHTSEEEEE----HH.HHH-B-SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEE CS
  COesterase  88 LyLnvytPkekkeakkklPVlVwihGggfqtgsase.ydgsaLaaegnvivVtinYRlGv.lGFlstgdeeapGNvGllDqvlALrWVkenIasFGGdp 184
                 L+++  +P      +k lP +V+i Gggf    +s+ +++++ +a+ + +v +i YR+ +   F  +          + D  +A+r+++ n ++ G dp
  CTQ28260.1  59 LTMDLLKPYA----DKPLPAVVFITGGGFLDAPKSKfIGQRVDIARAGYVVASITYRVVPnVTFPGM----------VEDAKTAVRFLRANAEKLGIDP 143
                 6777888754....5789******************65555545555**********9772445544..........56******************** PP

                 EEEEEEEETHHHHHHHHH CS
  COesterase 185 ervtlfGesAGaasvsll 202
                 +++ ++GesAG+ ++++ 
  CTQ28260.1 144 NHIAVMGESAGGYLAAMV 161
                 ************998775 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.6e-05     0.051      55      96 ..     118     164 ..     113     173 .. 0.87
   2 !   11.9   0.0   4.9e-05     0.097     191     220 ..     245     280 ..     194     297 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.6e-05
  Hydrolase_4  55 fddyvdDlaafvekvkeehpel.....plfllGhSmGGliallyllr 96 
                  f  +v+D++++v+ ++++ ++l      + ++G+S GG++a+ ++++
   CTQ28260.1 118 FPGMVEDAKTAVRFLRANAEKLgidpnHIAVMGESAGGYLAAMVGTT 164
                  5679************999999999999*************988754 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.9e-05
  Hydrolase_4 191 t......lPllllhGeaDkvvdpeasrelyerlgsk 220
                  t       P+ll+ G+aD+vv+p++s  l+e+l +k
   CTQ28260.1 245 TwisnktPPFLLMNGDADNVVSPSQSTLLHEALVAK 280
                  244445479*****************7777776654 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.064   1.3e+02      78     117 ..     121     163 ..      68     193 .. 0.83
   2 !   14.2   0.0   1.2e-05     0.023     124     188 ..     229     295 ..     170     307 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.064
         DLH  78 vlddlkaavaylksvpe...vstkkvgvvGfCmGGalalllaa 117
                 +++d+k av++l+++ e    +++ ++v+G   GG la  + +
  CTQ28260.1 121 MVEDAKTAVRFLRANAEklgIDPNHIAVMGESAGGYLAAMVGT 163
                 4566677777776666522257899999999999999987655 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.2e-05
         DLH 124 aavafYG..lspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHa 188
                 +a++ Y+   +  ++++ + +   p l + g++D+++  ++   l+eal a++++    v +ga+Ha
  CTQ28260.1 229 GAISAYPekAKRANPITWISNKTPPFLLMNGDADNVVSPSQSTLLHEALVAKKIPSTHYVVKGADHA 295
                 789999976677789999999999******************************************9 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.1e-06    0.0082      31      93 ..     248     314 ..     228     320 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.1e-06
  Abhydrolase_4  31 akgaapvLllqnerDpaTPyegakklakalgg....avlvtvegeGHgalaagntCvdkavdaYLlt 93 
                     ++++p Ll+++  D+++ +++ + l++al      +++ +v+g++H +l  +++ v+k + ++L++
     CTQ28260.1 248 SNKTPPFLLMNGDADNVVSPSQSTLLHEALVAkkipSTHYVVKGADHAGLMWYQPEVSKIIINFLDQ 314
                    2347*************************986556679**************************986 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1   0.00038      0.75      79     117 ..     126     164 ..     120     189 .. 0.89
   2 ?    3.4   0.0     0.023        45     171     195 ..     253     277 ..     229     295 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00038
  Esterase_phd  79 avvvalvdalvdehrvdaarvyvaGlsaGaaladllalh 117
                   ++ v + +a +++ ++d+  + v G saG+ la +++ +
    CTQ28260.1 126 KTAVRFLRANAEKLGIDPNHIAVMGESAGGYLAAMVGTT 164
                   556778899999***********************9975 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.023
  Esterase_phd 171 palvvqGdadtvvavknaeslvval 195
                   p l+++Gdad+vv++ ++  l  al
    CTQ28260.1 253 PFLLMNGDADNVVSPSQSTLLHEAL 277
                   78999********998877666555 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.031        61      60      90 ..     129     161 ..     109     169 .. 0.83
   2 ?    8.8   0.0   0.00056       1.1     206     255 ..     237     299 ..     165     300 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.031
                    HHHHHHHHHHCTTSSEE..EEEETHHHHHHHHH CS
  Abhydrolase_1  60 addldrildalgddklt..lvGhSmGGmialay 90 
                     ++l++  ++lg+d+ +  ++G S GG +a+++
     CTQ28260.1 129 VRFLRANAEKLGIDPNHiaVMGESAGGYLAAMV 161
                    6677777888888865555**********9975 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00056
                    C.........THHHHSEEEEEEETTCSSSCHHHHHHHHHC.....HTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 206 e.........lknvlaptlvisgtsDplvppkaledlaql.....lpkkrlvvisdagHlafle 255
                    +         ++n + p l++ g+ D++v+p+++  l ++     +p+ +++v+ +a H  +++
     CTQ28260.1 237 KakranpitwISNKTPPFLLMNGDADNVVSPSQSTLLHEAlvakkIPS-THYVVKGADHAGLMW 299
                    1334444333566666***************99999999988888888.********9988765 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00016      0.32     104     190 ..     146     280 ..     113     294 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
        FSH1 104 dGiiGFSqGaalaallaslleellkea.....shpslkfailvsGfkleepk....................................yeeyy.eedki 160
                   ++G S G+ laa++ ++  +++ ++     +  +++ ++ + G +  ++                                     y e     ++i
  CTQ28260.1 146 IAVMGESAGGYLAAMVGTTSGHKEFDQgeysnQSSDVQAVVDLYGLSDLTKVgadfsadiqkahqspaipeamlvngipwqgggaisaYPEKAkRANPI 244
                 567777888888877766555444333456664444444444444433333344444454455445555555555555555555555533322333333 PP

        FSH1 161 ......qtptLhvlGelDtvvdeerseaLaeafkns 190
                       + p+L + G++D+vv++++s  L+ea   +
  CTQ28260.1 245 twisnkTPPFLLMNGDADNVVSPSQSTLLHEALVAK 280
                 4555546799*********************98874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2415.34
//
Query:       CTQ28261.1  [L=427]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-18   67.1   3.5    3.8e-18   66.5   3.5    1.2  1  LamB      LamB porin


Domain annotation for each model (and alignments):
>> LamB  LamB porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   3.5   2.1e-22   3.8e-18      40     379 .]      83     427 .]      63     427 .] 0.83

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 2.1e-22
                 EEEEEEEEE..EEETTEEEEEEEEEEEEE-............-EEEEEEEEEET-STTST.T-EEEEEEE--S-E.EEGGGTEEEE---.EEEEEEEEE CS
        LamB  40 aElklgkel..ekedgkkfkvdvmlayssdelkndstadesdlalrqayveaknlleflp.eatlWaGkrfyrrn.dihilDfyywdls.GtGaGiedi 133
                   l+++k++   ++ ++++++++ +  + d          ++++++q y  +++l +flp +a++WaG+r+ +++ +i+ + ++ + ++ G G   +++
  CTQ28261.1  83 TSLAITKKWqgLASPEQWADYTYEMVGYGD----------KTVETAQNYGRFGGL-SFLPeGANIWAGRRYLDQRiNIFAYNTKEVHIDsGLGYNSKNF 170
                 555555555433444444555444444444..........469************.888889*********98888********999988********* PP

                 E-SSSEEEEEEEEEEEEEEEEC.EEEEEEEEEEEEEEEECCTTEEEEEEEEEEEEE--T-TT---EEEEEEEEEEE.EETT...EEEEEEEEEEECCCT CS
        LamB 134 dlgdgklslalvrsdesddssskkevsnnaldlrltgiklndggklelgldyaranksdakkaakdgvmltlehtq.sflg...gfnklalqygtglga 228
                 dl+ g+ ++ + +++  +      e s +++d+ +         ++elg++y+++ +    + +++++ ++++ +  sf+g   g +++ lqyg+g +a
  CTQ28261.1 171 DLNVGTDQIDWSSDTAPQA----IEGSRRIVDMAYRI------DQTELGMTYVKEIDDPLGTGKQKAISFSAKYSMpSFWGvakGQSTVKLQYGKGVIA 259
                 ***********99888753....46789999999993......34579999999999886667778889999999998999999*************** PP

                 T-SS---TTE----....EEEEEEEEEEEEEETTTEEEEEEEEEEEEEE......................TTS--EEEEEEEEEEEEECCTTEEEEEE CS
        LamB 229 enkgggsggelnnaaekdakslrlleqgvvqlsdkfslayavvyqksddry....................dngddkkwlsagvRpvykltdnfklllE 307
                    + ++ + l+   e+ + s+r+ ++g++ l d+f +++a++y+++++++                     +++++  ++ +    +   +n+++l+E
  CTQ28261.1 260 PYLNTSRITVLS---EEGDCSMRFSTDGNLTLFDDFAVSPAFIYEYTKREKtadrttfipdtgysggdmtyGSANETGIFTGVNVKQNIHHQNLSMLYE 355
                 999999888888...45789*****************************99****************9996555555555555555666789******* PP

                 EEEEEEEE.........EEEEEEEEEEEESSSSTT-SSEEEEEEEEEEEEESEEETGGGSB-SS-EEEEEEEEEEEEEEE CS
        LamB 308 lgydrvkk........gnlyKlTlaptlkagsgfwsRPelRlfatyakwneaakdalskagakkgdtseltfGvqaEaWW 379
                 + ++++ +        g  yK+   p+l+++   +  P l l  tya  ++++            ++se+ +G ++E+W+
  CTQ28261.1 356 VMVNNTINkngvegasGVGYKIAAGPALQLDVLPYVAPILSLTITYAGGDKEVTLL--------PEDSEWRVGYRMEVWF 427
                 ***999855667777789******************************88888873........4699***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3237.11
//
Query:       CTQ28262.1  [L=314]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-12   46.7   0.0    6.8e-12   45.5   0.0    1.6  1  HTH_18        Helix-turn-helix domain
      1e-06   28.7   0.2    1.9e-06   27.8   0.2    1.3  1  AraC_binding  AraC-like ligand binding domain
      2e-06   27.7   0.2    5.7e-06   26.3   0.0    1.9  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
    3.5e-06   26.6   0.0    6.5e-06   25.8   0.0    1.4  1  Cupin_2       Cupin domain
     0.0031   17.8   0.5      0.017   15.3   0.1    2.0  2  Nmad5         Nucleotide modification associated domain 5


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   1.9e-15   6.8e-12      11      79 ..     243     310 ..     235     311 .. 0.94

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 1.9e-15
                 HHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHH CS
      HTH_18  11 tLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyr 79 
                 ++++l+k+++g++++++l ++Rl+   +lL ++t++s+ ++   +G++++s+ ++ f++ ++++ +eyr
  CTQ28262.1 243 KVSKLIKDFTGKNFSDLLVEKRLDVLIHLL-KHTNHSIIDVINMTGYENASHCYKVFKEKYNMSIKEYR 310
                 6899************************99.67***********************************9 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.2   5.3e-10   1.9e-06      16      68 ..      56     108 ..      44     112 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 5.3e-10
                   EEEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSE CS
  AraC_binding  16 fpphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedg 68 
                    p h h++ +++y+ +G+   ++n++   lg+G+++L+++   H++e++++++
    CTQ28262.1  56 IPLHSHGFIELIYIYQGKMHQKINEESLTLGKGEILLINQFARHEIEAAGQND 108
                   477********************************************998765 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       2.4   8.6e+03      24      33 ..      26      35 ..      25      36 .. 0.79
   2 !   26.3   0.0   1.6e-09   5.7e-06       1      41 [.     272     310 ..     272     311 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.4
                HHHHHHHHHS CS
    HTH_AraC 24 yFsrlFkket 33
                +++++Fk+ +
  CTQ28262.1 26 QLCHKFKSHM 35
                7999999875 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 1.6e-09
                 HHCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                 L+   +tn +i d+ ++ g+ + s+ +++Fk++++m++++yr
  CTQ28262.1 272 LK---HTNHSIIDVINMTGYeNASHCYKVFKEKYNMSIKEYR 310
                 67...8999********************************9 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.8e-09   6.5e-06      10      65 ..      55     109 ..      45     115 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.8e-09
                 EEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-E CS
     Cupin_2  10 sapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdepa 65 
                 ++p h+H    e++y+ +G+++ ++++e  +l++G++++++   +H+++ +g+ + 
  CTQ28262.1  55 KIPLHSHGFI-ELIYIYQGKMHQKINEESLTLGKGEILLINQFARHEIEAAGQNDI 109
                 5789999999.***************************************998765 PP

>> Nmad5  Nucleotide modification associated domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.17     6e+02      17      50 ..       2      36 ..       1      73 [. 0.77
   2 !   15.3   0.1   4.8e-06     0.017       9     109 ..     107     217 ..     102     249 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.17
       Nmad5 17 kkhgiaekekalrkeradlaeevrldalg.gkkte 50
                  h+i ek  a  +++ +l ++ ++ +++    +e
  CTQ28262.1  2 LHHDIHEKLLAYTDRELELLRANYQLCHKfKSHME 36
                57899999999999999999999999988333333 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 4.8e-06
       Nmad5   9 dqIvanaLkkhgiaekekalrkeradlaeevrldalggkkteaalreiikeieklqsklpkeglstnkpkstgsvidvnla.Ga..........rvely 96 
                 ++I+ n ++k++++++ + l++e + + + ++ ++ g kk  + +  ++ ei++ q+ + ++ +s+ ++++  ++i vn+  G+               
  CTQ28262.1 107 NDIIINFIIKTEFFGRLMSLFDENNIISRFILSAINGRKKHGEHIHFKVGEIDAIQN-IMHVIISEIYSNNHLKEIRVNFLvGLlmtellsnvqASDYH 204
                 8999*****************999888888888888888888999999999999966.88899999999***********9999544444444422222 PP

       Nmad5  97 fngkkletvvlas 109
                 +ng++ e+  +a 
  CTQ28262.1 205 INGSYNESLAMAV 217
                 2223333333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2269.76
//
Query:       CTQ28263.1  [L=870]
Description: Bacterial alpha-L-rhamnosidase family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-42  145.8   0.0    2.5e-42  145.4   0.0    1.2  1  Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin gly
    6.3e-29  101.0   0.0    1.1e-28  100.2   0.0    1.3  1  Bac_rhamnosid_N  Alpha-L-rhamnosidase N-terminal domain
    7.8e-12   45.1   0.0    1.7e-11   44.0   0.0    1.5  1  Bac_rhamnosid    Bacterial alpha-L-rhamnosidase concanavalin-
    2.7e-09   36.7   0.1      9e-09   35.0   0.0    1.9  2  Bac_rhamnosid_C  Bacterial alpha-L-rhamnosidase C-terminal do


Domain annotation for each model (and alignments):
>> Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4   0.0   5.6e-46   2.5e-42       2     339 ..     436     767 ..     435     768 .. 0.93

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 5.6e-46
                      B-EEEEES-HHHHHHHHHHHHHHHHTBSSSB-S-SSSS----BHHHHHHHHHHHHHHB--HHHHHHHHHHHHHH--TTS--BSBSS--T..... CS
  Bac_rhamnosid6H   2 qtgsfecsdpllnrlhenvlwsvrsnflgvptDCPqrdErlgWtgdaqlfaptasylydveaflekwlrdladeqrengavptvaPevl..... 90 
                      + g f csdp +n+l+e+++++  +n+++v+ DC +  Er+ + gd+ + a+++ y +d++a+++k++ d +++ r+ g v+ +aP +      
       CTQ28263.1 436 ENGGFYCSDPYINKLFEVAKRTKLNNIHSVFGDCAR--ERFAYGGDIVALARSQVYQFDSAAIYKKTIFDFINDIRPCGGVTETAPFMGiktng 527
                      6789******************************76..9***********************************************99999998 PP

                      .T--B--TTTTTHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTSBT.TB.--S-S--STT.......-SS----.HHHHHHHHHHHHHH CS
  Bac_rhamnosid6H  91 .galsetaeWadaivivpwelyetygDkeilkkqYesmkryldylkqrsddgleelskfqlgDWldpe..ardgaakte.kalvataylvrslk 180
                       g  ++   W+ +++ +    y++yg+ ++l++  + +++ +  l+ r+ d   +l +  lgDW +     r++++ ++  ++++ +++++ l 
       CTQ28263.1 528 vGGETGPLGWQLVLPYLIAIHYRHYGNVNLLAESLPFLEKQILSLEMRDFD---DLVTCCLGDWGSRVhdMRNYKNGSPaLHFTSACFYYYHLL 618
                      77778889********************************77777777777...899********8777755666655515899********** PP

                      HHHHHHHHTTS..--HHHHHHHHHHHHHHHHHHB.-TTS-BTT--HHHHHHHHHTT-S-GGGH.HHHHHHHHHHHHHTTS-----TTTHHHHHH CS
  Bac_rhamnosid6H 181 lvakiaellgkeedakkyaalaeelkaafnkkyldsetgsvandtqtanalpLafglvpeaeraakvaerlvkkveenknhlstGfvGtpillr 274
                      ++aki   lg +e   ky  +a+++++++ + y  + +gs a+++qt+ +++++f+l ++    +   ++l++ +++++n ++ G+ G ++  +
       CTQ28263.1 619 IIAKICDDLGFKEKWLKYIGKANKIREKILSLYK-NTDGSFADRSQTSFVFAIYFDLCDDI---ESSLNALIDLIKKEQNVITCGIFGQSFAYE 708
                      *********************************9.***********************554...5699************************** PP

                      HHHHTT-HHHHHHHHH--SSSSSHHHHHTT-SS--SSTTSB---TTS--S--SGGGGGHHHHHHH CS
  Bac_rhamnosid6H 275 vLsengeedlayalllqeeypswgymvknGaTtiwErWdsmlnpkemnSfnHyalgavaewlyen 339
                      +  ++g+++l+++ l+ e   +++ m+kn a t+ E++     ++ + S nH+++ + + wl+++
       CTQ28263.1 709 IFHRYGHNELILEWLRVE--AGFKKMLKNDASTLKEFFG----DNLNGSNNHAMFSSYSSWLFQA 767
                      ***************765..69****************6....79999***************97 PP

>> Bac_rhamnosid_N  Alpha-L-rhamnosidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.0   2.4e-32   1.1e-28       4     167 ..     132     297 ..     129     301 .. 0.88

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 2.4e-32
                      EEEEEEEEEESEEEEEETTEE-SSBSSBT----TTTEEEEEEEE-TTT--SEEEEEEEEEE-HHHHS--TTS......S-SS-.SS-EEEEEEE CS
  Bac_rhamnosid_N   4 krarlyitaLGvyelelNGkrvgdevLaPgwtdyrkrvqyqtyDvtsllregeNaigvlvgeGwyagrvgfg..ekr.rstyg.kepallaqle 93 
                       +a + i +LG+y+l++NGk+v+   L++ wt+y k ++y ty++ +++++ +N++ v++++Gw++        +++ r+t +  ep+++a++ 
       CTQ28263.1 132 LDAYISIVGLGFYKLYINGKEVTRGELNTDWTNYAKIIYYDTYNIKPFINQPKNEVIVELADGWFNPAPLKLfgKYNlRETLTiGEPQVIADIY 225
                      56888999**********************************************************765433456666777777********** PP

                      EEETTS-EEEEE-STT-EEE--SEEEEETTTEEEEEGGG--TTTTSTT---TTSEE-EE--S--SEEEE--S-- CS
  Bac_rhamnosid_N  94 veyedgtkeviatdtsWkvtegpiteseiydGEtyDarkeikgwsepgfddskwnpvkvlkvpegkleaqeapp 167
                      ++++d ++ +i +d +W++ eg+ t ++iy GE+ D +   +g +++++    w++v+  + peg l+++  p 
       CTQ28263.1 226 MKFAD-REMIIGSDADWQYCEGAYTFNNIYLGERLDMKL-FRGDNTTDLLMPDWKNVVLSNGPEGRLVSSFIPK 297
                      ***66.67899**************************95.5666777899999***********9998876665 PP

>> Bac_rhamnosid  Bacterial alpha-L-rhamnosidase concanavalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   3.8e-15   1.7e-11       3     101 ..     312     430 ..     310     432 .. 0.79

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 3.8e-15
                    EETTEEEEEEEEEEEEEEEEEE---TT-EEEEEEESEE-TTS-EE-GGG......................TT---EEEEE-.---SSEEE--SS- CS
  Bac_rhamnosid   3 lkdgttvlDlGqnlaGvirlkvkgeeGtevklrfgEvLeddgevdtrnl......................rkakatdeyil.kGreeeawqpsft 75 
                    ++++t+++D+G +++G+i l ++++e ++v+l ++E +++++e++t++                        +a+++d + + +G+  + + + ft
     CTQ28263.1 312 VDEETFIIDFGAIVTGFIDLSITASENQRVELLYSEDVDENYELNTDSTlagfvgkqvtegviidggigapARAEQKDAFECrSGK--NHFINAFT 405
                    57899****************************************88887898665555555666665655555555555555666..8******* PP

                    -EEEEEEEEES-SS---GGGEEEEEE CS
  Bac_rhamnosid  76 fhGfrYveiegladeladesltglvv 101
                     h+frYv+++g++ e   +++++l v
     CTQ28263.1 406 CHSFRYVQLSGINIEQL-NNVQALSV 430
                    ************55533.34777666 PP

>> Bac_rhamnosid_C  Bacterial alpha-L-rhamnosidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.7   7.6e+03      31      42 ..     153     164 ..     151     171 .. 0.81
   2 !   35.0   0.0     2e-12     9e-09      11      65 ..     782     837 ..     770     844 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.7
                      ETTEEEEEEEEE CS
  Bac_rhamnosid_C  31 slyGkikvdWkr 42 
                       ++G++++dW+ 
       CTQ28263.1 153 VTRGELNTDWTN 164
                      689*******86 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 2e-12
                      EEEE----BTTB-EEEEEEEETTEEEEEEEEEETTEEEEEEEE-TT-.EEEEEEE- CS
  Bac_rhamnosid_C  11 kiviaPkpggdlksvkasfeslyGkikvdWkredgkftlnvsvPant.taeVvLpg 65 
                       i+i P + +++++v+  +++++G+i+++W+r ++ ++l ++vP+n  ++++ Lp+
       CTQ28263.1 782 VILISPSFTDTINFVDCWHQTIRGRIECRWRRYKKGIELVIKVPFNLkKCTLKLPK 837
                      589*******************************************6368999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 5747.17
//
Query:       CTQ28264.1  [L=426]
Description: PTS system, lactose/cellobiose family IIC component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-39  134.2  41.5    5.1e-39  134.2  41.5    1.4  1  PTS_EIIC  Phosphotransferase system, EIIC
  ------ inclusion threshold ------
      0.055   13.8   1.3       0.26   11.6   1.3    2.2  1  DAD       DAD family


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2  41.5   5.7e-43   5.1e-39       2     322 ..      30     346 ..      29     349 .. 0.88

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 5.7e-43
    PTS_EIIC   2 dgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiaygl..akggkgvaglagligllafnllaaisv 98 
                 +g+ml++p++i ++  +++  +p+++    l       + ++l+ +++ +  ++  +L++++a+++ay+l  + +++g++  +gli++++f++l+++ +
  CTQ28264.1  30 SGMMLILPVTIMSSVATLVKVFPFAPYQDFL-------LRHNLTRFFDIPITFTNNFLAVIVAFSVAYTLakNFDVDGFM--SGLISMISFFILTPYDL 119
                 79*******************9996666655.......4588999*************************6666778888..***********999987 PP

    PTS_EIIC  99 lllaagalasakasilgiktlstgvfgaiivgllaaylynkfek.nitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalg..ll 194
                       +      si+g +++ +g+f+ai+v+++++ +   + + ++ ik+Pe++p f++k+f+ +i+++++l++++++  +i ++ +g++  ++  l+
  CTQ28264.1 120 GEIGPLG---QSFSIPGQWLGPMGLFTAILVAIISTRIFVAITRkGLIIKMPENVPEFISKSFSSLIPGIAILTLFTIISAVITSVGYGSIHEIIykLI 215
                 7666655...799***********************999888888*************************88888877777777777777777668744 PP

    PTS_EIIC 195 ...lggsgsllgvlifg.flerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllg 289
                    l++ gs++ +lif  ++ +ll++fGlH+  i+  ++ ++++++ ++  ++y ag ++++i    f  +++G++g  l l+i+  +++ks+++k+lg
  CTQ28264.1 216 qvpLTSLGSGIWSLIFVaVVAQLLWFFGLHGHAITLGIVAPIWFAMDAQQLAAYAAGVDLPNITGFAF-FMTYGAAGDLLPLAIMLAFFAKSARYKTLG 313
                 7797777777777776505668**************************99999998888888765555.8***************************** PP

    PTS_EIIC 290 saaltpflfGItepleFgfpfvlnlllfipall 322
                 + al p++f I ep  +g+p+v+n+ l+ip ++
  CTQ28264.1 314 KIALPPAIFTIGEPMAYGVPLVMNFTLAIPYIF 346
                 ******************************986 PP

>> DAD  DAD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.3   2.9e-05      0.26      29      66 ..      79     115 ..      61     117 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.9e-05
                 HHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHH CS
         DAD  29 flvlvgvlqfvYcvlvgnfpfnaflsgfiatvgqfvLt 66 
                 fl ++ ++ ++Y +l++nf+++ f+sg+i++++ f+Lt
  CTQ28264.1  79 FLAVIVAFSVAY-TLAKNFDVDGFMSGLISMISFFILT 115
                 333444444444.689********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       832  (0.0464053); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 2952.32
//
Query:       CTQ28265.1  [L=293]
Description: Transcriptional regulator, LysR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-27   95.1   0.0    5.5e-27   94.5   0.0    1.2  1  LysR_substrate  LysR substrate binding domain
    5.3e-16   58.3   0.1    8.5e-16   57.7   0.1    1.3  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0069   16.2   0.1      0.014   15.1   0.1    1.4  1  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.081   13.0   0.1       0.22   11.6   0.1    1.7  1  HTH_20          Helix-turn-helix domain
      0.091   12.7   0.0       0.26   11.2   0.0    1.7  1  MarR_2          MarR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.0   1.5e-30   5.5e-27       3     200 ..      88     284 ..      86     290 .. 0.92

  Alignments for each domain:
  == domain 1  score: 94.5 bits;  conditional E-value: 1.5e-30
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLargepv 96 
                     +  g+Lr+g++p ++    ++l++ ++++yP ++++l +++se+++d++ +++lDl+i++++  ++ ++ + +L + ++ l+  + h  +     
      CTQ28265.1  88 QMVGQLRVGMVPLASLNP-MQLIKPLAEKYPALQFSLLSMTSEQIIDGVSRNQLDLGICYLQHlDEGQFKIARLPQTRMGLLHDKRHFDFSAGTP 181
                     6679*********77777.9*******************************************999*********************44445555 PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTC CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgr 191
                      +e La +pl +l++g  +r+++e  ++++gl+pr ++e++s+  ++++v+aG+  a++p     ++l d +l++lp++e  + ++l+l+ r+++
      CTQ28265.1 182 GWETLATLPLGFLTKGMYYRESIEISFKAKGLTPRYVFESDSTFQIIQAVQAGICCAIMPLNNGLEALSD-NLEILPIAETHVDSQLALIMRQQE 275
                     7**************************************************************8776655.8999*****9999*********** PP

                     CCHHHHHHH CS
  LysR_substrate 192 elspavraf 200
                     + s +++  
      CTQ28265.1 276 PVSTLAEKC 284
                     *99988765 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.1   2.4e-19   8.5e-16       1      60 []       3      62 ..       3      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 2.4e-19
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSE.EEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrg.lrLTeaGe 60
                ++ql++++a+ ++++f +AA +++++qp++s++i++LEeel+ +L++R g++    T++Ge
  CTQ28265.1  3 IKQLKYLIALDQTRHFGQAAAACHITQPTLSMRIRNLEEELNLTLIQR-GQRfEGFTPEGE 62
                589*********************************************.555368999986 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1     4e-06     0.014       9      51 ..      12      54 ..      10      56 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4e-06
                HHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHH CS
      HTH_30  9 lenggnisatAkaLhvHrnTlryRLrrieellgldlddpddrl 51
                l++ +   ++A+a h+   Tl+ R+r +ee l+l l +  +r+
  CTQ28265.1 12 LDQTRHFGQAAAACHITQPTLSMRIRNLEEELNLTLIQRGQRF 54
                566677789************************9998777776 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   6.2e-05      0.22      20      50 ..      11      41 ..       6      52 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.2e-05
                STCTTB-HHHHHHHHTS-HHHHHHHHHHHHH CS
      HTH_20 20 araegltaselaerldlskntlsyHLrvLee 50
                a ++ + +++ a+++ +++ tls ++r Lee
  CTQ28265.1 11 ALDQTRHFGQAAAACHITQPTLSMRIRNLEE 41
                457888899********************99 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.2e-05      0.26      23      47 ..      17      41 ..       4      42 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.2e-05
                EHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsrilkrLva 47
                  g+ a++++++++++s +++ L++
  CTQ28265.1 17 HFGQAAAACHITQPTLSMRIRNLEE 41
                57999******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2259.57
//
Query:       CTQ28266.1  [L=766]
Description: putative oxidoreductase; putative molybdoenzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-22   78.7   0.0    6.4e-22   78.1   0.0    1.2  1  Molybdopterin    Molybdopterin oxidoreductase
    2.2e-16   59.8   0.0      4e-16   59.0   0.0    1.4  1  Molydop_binding  Molydopterin dinucleotide binding domain
  ------ inclusion threshold ------
      0.028   13.9   0.0       0.14   11.6   0.0    2.0  1  PcrB             PcrB family


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   1.1e-25   6.4e-22       1     319 [.     114     474 ..     114     515 .. 0.77

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 1.1e-25
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHH....CHH CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppasaq....qti 92 
                    Rl++P+v    r+ + +++v W++A++ i + l+      +pd+v ++ sg++ s+e+  +++ +++ +g +n+   ++ ++    s+     q i
     CTQ28266.1 114 RLTHPLVY--DRDSDTLRPVAWEQAFARIGEILRG----LQPDEVEFYTSGRA-SNEAAWLFQLFAREYGTNNFPDCSNMCHE---STSvglpQSI 199
                    9******9..899**********************....67777886666555.59****9*********9665555555555...4444567777 PP

                    CCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB-H..................CGGGCSEEEEEHTTTHH CS
  Molybdopterin  93 gsdsrsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpryae..................llkfadewlaikpgtda 170
                    g ++      + +l d+++++l+i +G+N+ +++p + + ++ +++++++ +iv+ p  +                   ++  a+ +  +++g da
     CTQ28266.1 200 GIGKG-----TVSLDDFDQTELVISIGHNPGTNHPRM-MGTLHELSRRGVPIIVFNPLRERalerfadpqnvmematrrSTPIASTYYQVRAGGDA 289
                    76644.....77899**********************.6666667777788888887777677777778888887766657789999999****** PP

                    HHHHHHHHHHHH.....CCCCTCHHHHHHEECHHHCCCCCCCEECCSHHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHHHH CS
  Molybdopterin 171 alalamghvilq.....elkvdkeflrkytygkeetdmpllvtleeetgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyravin 261
                    a + ++++++lq      +  d +f++++t g+  +++ l +t+ +  +++++   +   ++a+ +ak +   ++ +G+g++++++g+ ++r ++ 
     CTQ28266.1 290 AALKGIAKALLQleeeqGNVLDHAFIAQHTQGFTAFADDLHATRWQDIEQESGLTRESLNQVAAAYAKSRA-TIVTYGMGITQHNKGTSNVRLIAD 384
                    **9*******97333223556*************************99999999************99999.************************ PP

                    HHHHCTHCSSTTCEEEEESS................................CTTHHHCHHHHTCCTTCCCCCCCTTHHHHHCCCTTTCS CS
  Molybdopterin 262 LallvgnvgqpgGgwahlnG................................qlilagaaekvgalpvllsvkslkeekikfaaeqpgnl 319
                    L+l+ gn+g+pg+g   l+G                                + ++   a+k+ +  +  ++k l      fa   p+ +
     CTQ28266.1 385 LLLMRGNIGKPGAGICPLRGhsnvqgnrtvgisekpsaafldslqrvmgitpPRHHGHDAVKALEAMIAGEAKALICLGGNFAVAMPDHE 474
                    ********************4444444444444444444444444444444433333344444444444444444444444444444444 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   6.6e-20     4e-16       1     111 []     642     749 ..     642     749 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 6.6e-20
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS.-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEE....EEESSB-TTEEEEESSHCC.....S- CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpep.evveinpedAaalGikdGdlVevesrrGsvevra....kvtervrpGvvfmpfgwweagekggn 89 
                      +rL+t rs+dq++++++ +++++++ +++ +v+ +n++d+aa G+++Gd+V ++++    e+      +v ++++pG+v +++++         
       CTQ28266.1 642 MRLVTLRSHDQYNTTIYAMDDRYRGVFGRrDVLFMNEQDMAAQGLEHGDRVDIHTALPDSELTLeditVVAYGIAPGTVGAYYPE--------- 726
                      589****************************************************99855555544559**************99......... PP

                      GHCTS.--SCSTTT--CSTT-EE CS
  Molydop_binding  90 aNalt.ddatdplsgtpefksva 111
                      aN+l+   ++d+ sgtp++ksv+
       CTQ28266.1 727 ANVLVpLNYLDEESGTPSYKSVP 749
                      9*******************986 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.3e-05      0.14     142     206 ..     323     387 ..     211     394 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHTT-SEEEEE-.TTSSS-H.HHHHHHHHHHSSSEEEEESS--SHHHHHHHHCC.SSEEE CS
        PcrB 142 aayallaakllglrliYlEa.sGaledv.eevialkkklekarlivGGGirsaEkAkevvea.ADviv 206
                 +   ++a++l   r+  +E  sG + +  ++v+a  +k   +++ +G Gi +++k    v+  AD ++
  CTQ28266.1 323 T---AFADDLHATRWQDIEQeSGLTRESlNQVAAAYAKSRATIVTYGMGITQHNKGTSNVRLiADLLL 387
                 3...456699999**********988777****************************99999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 5266.08
//
Query:       CTQ28267.1  [L=56]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 435.43
//
Query:       CTQ28268.1  [L=303]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-62  210.2   1.1    4.7e-62  210.0   1.1    1.0  1  Bestrophin  Bestrophin, RFP-TM, chloride channel


Domain annotation for each model (and alignments):
>> Bestrophin  Bestrophin, RFP-TM, chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.0   1.1   2.6e-66   4.7e-62       2     294 ..       2     281 ..       1     282 [. 0.87

  Alignments for each domain:
  == domain 1  score: 210.0 bits;  conditional E-value: 2.6e-66
  Bestrophin   2 varsklrsflkllfrwkGsvyklilrelllflllyalvvllyrleerlfellsi.ce.....lipLsfvLgFrvnavydRWweqrkllgwldkaarsla 94 
                 + r++ ++++  lf w+Gsv+ +i+ +lll +l++++ ++ y+    ++e+l+i        l+ ++++LgFr++a+y+R+ e+r+l+g++  a r+l+
  CTQ28268.1   2 IIRPE-QHWFLRLFDWHGSVLSKIIFRLLLNVLMSIIAIISYQ----WYEQLGIhLTvapfsLLGIAIFLGFRNSASYSRFVEARNLWGTVLIAERTLV 95 
                 67788.9****************************99999999....5555555433345557778********************************* PP

  Bestrophin  95 rqvrglsdeegrlarrtilrylvlllvlffralssrvrkrfptle..hlleagllteeeakilenkywvplqWavsllrrlaerlkelakegrikddqa 191
                 rq+r++    +++  ++++   v +lv+f  +l++++rk++pt++  +ll+++     + +++ ++ +++++    +l  +++++ +l+++g+++d++ 
  CTQ28268.1  96 RQLRNILP--AEHDAHRRI---VSYLVAFSWSLKHQLRKTDPTADlrRLLPEE-----RVTEILASSMPTNR----ILLLAGNEIGQLREAGKLSDIT- 179
                 *****754..344444444...68*********************98888877.....33335565666666....66666789**********9977. PP

  Bestrophin 192 lkeleeelnelraklgsleridwtpiPlvYtqvvtravylyfllallgrqfldseidlylPvftllq............faffffGllkvaeqlenPFG 278
                 +  ++++l+el ++lg++er+++tp+P++Yt++++r+vyl+++l               lP f+l+             ++++f+ ++ +ae+le+PFG
  CTQ28268.1 180 YGLMDNKLDELAHVLGGCERLATTPVPFAYTLILQRTVYLFCTL---------------LP-FALVGdlhymtpfvsvfISYTFLSWDSLAEELEDPFG 262
                 369*****************************************...............89.888888889999988889******************* PP

  Bestrophin 279 edddDlelnal...idrnl 294
                 +  +Dl+lna+   i+rnl
  CTQ28268.1 263 TAANDLPLNAMcntIERNL 281
                 ***********9*99*998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2234.09
//
Query:       CTQ28269.1  [L=307]
Description: Cation diffusion facilitator family transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-43  148.2  10.6    2.9e-43  147.9  10.6    1.1  1  Cation_efflux  Cation efflux family
    3.3e-23   81.6   0.7    5.5e-23   80.9   0.7    1.3  1  ZT_dimer       Dimerisation domain of Zinc Transporter
  ------ inclusion threshold ------
       0.11   12.1   7.7      0.044   13.4   1.1    2.1  2  SseC           Secretion system effector C (SseC) like family


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.9  10.6   4.8e-47   2.9e-43       2     199 .]      24     217 ..      23     217 .. 0.96

  Alignments for each domain:
  == domain 1  score: 147.9 bits;  conditional E-value: 4.8e-47
  Cation_efflux   2 ilsllanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygrlevlgalvsgllllglavfllleaiqklikeg 97 
                    ++s+++n++l++ +++vg++++S+ l+ad++hs+sdlv++ ++l+a k sr+p+d+++ +G++r+e+ ++l+ g++ll+++  +l+ a  +l ++ 
     CTQ28269.1  24 LVSVVVNIFLSALQVVVGIFSGSQGLIADGMHSFSDLVADGVVLMANKKSRRPSDHDHHYGHWRYENGASLIIGAMLLLVGGGMLWSAAGHLAQPQ 119
                    689******************************************************************************************666 PP

  Cation_efflux  98 ereihaglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvaslligliilysalkllke 193
                         ++ al+ alv+l+v+  l++++  a+r+l+s++l a+a+h+++Da++sl+v++++++ l +      ++Dp+a+l++gl+i+ ++++ +++
     CTQ28269.1 120 TIPPVHSAALWMALVALAVKEGLFRYMLAAARRLNSSLLIANAWHARSDAASSLVVALGIIGNLAG----FAWFDPLAALAVGLLIARMGYRFAVS 211
                    667778899****************************************************99996....479*********************** PP

  Cation_efflux 194 slseLl 199
                    +l +L+
     CTQ28269.1 212 ALHDLM 217
                    ***997 PP

>> ZT_dimer  Dimerisation domain of Zinc Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.7   9.3e-27   5.5e-23       2      79 .]     222     298 ..     221     298 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 9.3e-27
                 ...HHHHHHHHHTT-SS-EEEEEEEEE-S----EEEEEEEE-TTS-HHHHHHHHHHHHHHHHHH-TT--EEEEEEEE. CS
    ZT_dimer   2 deeeeeeireiiksvpgvkgvhdlrtrksGskifvdlhievdgdlsvkeaHeiadevekrikeefpgvadvliHvePe 79 
                 dee++++i ++++++pgv g hdl+trk+G+ ++vd+h+ev g++sv e+H+ia + ++r+ +++ +v +v++H++P+
  CTQ28269.1 222 DEEMQQAIADTLRTTPGVAGLHDLKTRKAGDLVLVDVHLEVAGEMSVAEGHQIARHARERVLAQH-PVLNVMVHLDPC 298
                 899**************************************************************.668********7 PP

>> SseC  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.1   7.3e-06     0.044      52     113 ..      18      73 ..       2     138 .. 0.83
   2 ?    2.5   0.7     0.015        92      88     127 ..     193     254 ..     168     271 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.3e-06
        SseC  52 kakkaGiigkIfGwilaivsvvagalkvgaslll.aavgvAgglmdaalgiadevvaaattks 113
                 +a+k+ +++ ++++ l ++ vv+g++++  +l +  + ++          +ad vv +a+ ks
  CTQ28269.1  18 QARKSTLVSVVVNIFLSALQVVVGIFSGSQGLIAdGMHSFS-------DLVADGVVLMANKKS 73 
                 79*****************************9997777777.......456666666666655 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.015
        SseC  88 vgvAgglmdaalgiadevvaaattks.lideem.qpimdvv....................d 127
                 + +A gl++a +g   +v+a  + ++ ++deem q+i+d +                     
  CTQ28269.1 193 AALAVGLLIARMGYRFAVSALHDLMDrAVDEEMqQAIADTLrttpgvaglhdlktrkagdlV 254
                 33444444444444444444444432255566677788776666666666665555555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2232.19
//
Query:       CTQ28270.1  [L=60]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       144  (0.00803168); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 465.96
//
Query:       CTQ28271.1  [L=228]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-21   76.5   0.0    2.1e-21   76.4   0.0    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
  ------ inclusion threshold ------
       0.11   12.2   0.1       0.18   11.5   0.1    1.3  1  Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   2.4e-25   2.1e-21      13     224 ..      21     225 ..       9     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 2.4e-25
                 BEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTS.SSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGTCCHSSCGCG.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
   SBP_bac_3  13 sykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgk.vDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaskissiksladL.. 108
                     e+g+++G+ v+l + +a r gv  efvp++ ++ + a + g+ +Dia   ++i p+Re++++F+ py + + + lv  ++       +s+ad+  
  CTQ28271.1  21 AHLGETGKPAGITVELSHRLATRWGVSAEFVPYPAAGKVVADAGGEhWDIAF--LAIDPAREATLRFTSPYITIQGTALVSVDS-----PCQSVADMdr 112
                 556789***************************666666655555449*875..99******************9999999664.....3566666633 PP

                 TTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETTTHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 109 kgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkgdseLrkainkala 207
                 + +++ v ++ +++ +l+++l+ +a++ + ++ ++a+ a  +g+ d v++ +  l+  ++++++  v +    +++ + ai v ++d +   a+n+al 
  CTQ28271.1 113 PATTINVGQNAAYDLWLTRHLQ-HASLHRLPSSQQAIDAFLAGEGDMVAGIRQPLEATARQHAGVRVLA--DNFTEIQQAICVARADVDRFHAVNDALS 208
                 6679**********99**9775.99*******************************************9..99999*********************** PP

                 HHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxx RF
   SBP_bac_3 208 elkadgtlakisekWfg 224
                 e +adg l+++ + ++g
  CTQ28271.1 209 EWRADGSLQALIAGHLG 225
                 **********9987766 PP

>> Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     2e-05      0.18      18      46 ..      34      64 ..      33      67 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2e-05
                     HHHHHHHHHHTTHHHH.HHHHHH.H.HHHHH CS
  Ribosomal_L12_N 18 seLvkalEekFGVsAA.APvavaaa.aaaaa 46
                     +eL   l +++GVsA   P  +a+   a a+
       CTQ28271.1 34 VELSHRLATRWGVSAEfVPYPAAGKvVADAG 64
                     89************87567666544533333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1844.63
//
Query:       CTQ28272.1  [L=289]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-55  188.7   7.6      2e-55  188.5   7.6    1.1  1  DUF2236   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DUF2236  Uncharacterized protein conserved in bacteria (DUF2236)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.5   7.6   1.1e-59     2e-55       1     224 [.      42     269 ..      42     272 .. 0.92

  Alignments for each domain:
  == domain 1  score: 188.5 bits;  conditional E-value: 1.1e-59
     DUF2236   1 wryagdelilllgalaalllqaahplvltgvldhstf.adplrRllrTaqfiltvvygsgeeaeaaaarVrllHaavrgtdasgerygainpedllwvh 98 
                 w+++gd +++l+g++ alllq++hpl+l+gv+dhs+f +d l+Rl+rT qfi +++++++ +ae+++a+V+ +H+++ g+d++g++y a +p +l+wvh
  CTQ28272.1  42 WQVHGDFTSMLCGGISALLLQMLHPLALAGVWDHSRFrEDILGRLRRTSQFISATTFATTPDAERLIAKVQGIHQRIAGVDKDGTPYQASDPALLTWVH 140
                 9************************************888*********************************************************** PP

     DUF2236  99 atfsasflraygrt.vgpltaeeeeayyhewrrvgrllGvpdrllpatraafdayldemvlaelevdeearelgdarll......parpalpllrvitr 190
                 ++++  f+  + r+    +++e +e+y++e+++++r lG  +r++p+t++++++yl++m +++l+ de++re+++++l       + +p++++++++ +
  CTQ28272.1 141 VAECSCFMASHLRYkRTVVSPERQEDYFRESAEIARRLG--ARDIPQTPQEVADYLEAM-RPRLRCDERTREVAEVLLStrlpgrMSQPVGRVMMNAGI 236
                 ********9999994445*********************..799***************.9************777766888888999*********** PP

     DUF2236 191 gllppalrellglpvpwssrdellvva.lralvrl 224
                  llp++++e+lgl    ++ ++++ ++ +++++r+
  CTQ28272.1 237 DLLPEWAQEMLGLS--LTPLQRRTTRLmVHGVARV 269
                 **************..8887777733303335555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2411.80
//
Query:       CTQ28273.1  [L=143]
Description: osmotically inducible, stress-inducible membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-19   70.1   0.1    2.2e-19   69.8   0.1    1.1  1  OsmC      OsmC-like protein


Domain annotation for each model (and alignments):
>> OsmC  OsmC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.1   1.2e-23   2.2e-19       4      98 ..      44     138 ..      40     140 .. 0.92

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 1.2e-23
                 SSB-HHHHHHHHHHHHHHHHHHHHTCCCT---SCE..EEEEEEEEECCECTCEEEEEEEEEEE-SS-H..HHHHHHHHHHHHHSHHHHHHCT-SSSE CS
        OsmC   4 sgpsPeelllaalasCfaitlravakkkgikledl..eveveaerdpegakgiteirlkvevkipgadseeklkkllekaekrCpvsntlkngvkve 98 
                 +g++Peel+ aa+a+Cf+++l+ +++++g+  +++  ++ v++++++ g+  it+i l+ ++ +p+ + ++ ++++++ka++ Cpvs++lk++++++
  CTQ28273.1  44 KGTNPEELIGAAHAACFSMALSLMLSEEGYTATSIdtTAVVTLNKTDGGFA-ITDIALQSQIVLPDVS-PAAFDEIIQKAKAGCPVSQVLKANITLD 138
                 59******************************9997777777799989998.*************998.6***********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1276.25
//
Query:       CTQ28274.1  [L=73]
Description: hypothetical protein CH1034_220250 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.24s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 638.50
//
Query:       CTQ28275.1  [L=48]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 366.94
//
Query:       CTQ28276.1  [L=134]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-32  110.1   0.0    5.8e-32  109.8   0.0    1.1  1  BOF              Bacterial OB fold (BOF) protein
  ------ inclusion threshold ------
      0.036   14.3   1.7      0.077   13.3   1.7    1.6  1  Dr_adhesin       Dr family adhesin
      0.077   13.0   0.0       0.27   11.2   0.0    1.9  1  tRNA_anti-codon  OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> BOF  Bacterial OB fold (BOF) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   9.8e-36   5.8e-32       4     101 ..      30     128 ..      24     130 .. 0.95

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 9.8e-36
                 S---------------.-----HHHHTTS-SSEEEEEEEEEEEEEETTEEEEEETTEEEEEE--GGGSTT----TTSEEEEEEEEEEETTEEEEEEEEE CS
         BOF   4 apsatqaiegGfrgan.akvttvkaAlsaaDdasvslrGnivkriddDeyvFrDasGeikveiddrvfnglevqpkdkvkiqGkvDkelekaeidvkki 101
                 ap+++++ ++G+rg + + ++tv++A++++D+a+vslrGn++kr +dD+y FrD+sG+i v i+ ++fn ++v+p+d v+i+G++D+++++ ++++ ++
  CTQ28276.1  30 APPPPHKLDDGYRGVEdGRIMTVEQAKTMHDGATVSLRGNLLKRQGDDRYQFRDKSGTITVIIPVAAFNEQHVEPDDLVNINGSLDRKMTPPVVRIDRL 128
                 8*************9889****************************************************************************99887 PP

>> Dr_adhesin  Dr family adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.7   1.3e-05     0.077       1      21 []       1      19 [.       1      19 [. 0.97

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
  Dr_adhesin  1 MKKLAIMaatSvltavsTaHA 21
                MKKLA+  a+ +l+av+ a+A
  CTQ28276.1  1 MKKLAL--AMACLFAVGVAQA 19
                ******..999*********9 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.6e-05      0.27      21      61 ..      79     117 ..      47     128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.6e-05
                      EEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEEC CS
  tRNA_anti-codon  21 idlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrr 61 
                      ++ rD++g+i+v++    a    ++++++d+v + G + r 
       CTQ28276.1  79 YQFRDKSGTITVIIPV--AAFNEQHVEPDDLVNINGSLDRK 117
                      678*************..8888889***********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1080.76
//
Query:       CTQ28277.1  [L=167]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.039   14.4   0.0       0.06   13.8   0.0    1.4  1  DUF1214   Protein of unknown function (DUF1214)
       0.12   11.8   0.0       0.16   11.3   0.0    1.2  1  DUF5305   Family of unknown function (DUF5305)


Domain annotation for each model (and alignments):
>> DUF1214  Protein of unknown function (DUF1214)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.6e-06      0.06      54     102 ..      98     148 ..      69     155 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.6e-06
                 TS--EEETTS......BTTTSEEEEEEESS-TTTST.TSEEE-TTT-BEEEE CS
     DUF1214  54 lnryslgsrs...elkrnaDGsldillqpeppekekeanWLptpaggefslv 102
                 l ry++g+     +  ++aDG+l ++ q++ p+ ++ + WL + ++   +++
  CTQ28277.1  98 LTRYQIGDIRpqpDKMYSADGKLHLVYQRSTPP-SPISVWLAVTPKTAGNIS 148
                 589999998887755899************995.5668***99887555555 PP

>> DUF5305  Family of unknown function (DUF5305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.8e-05      0.16     117     172 ..      27      82 ..      11      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.8e-05
     DUF5305 117 illiilgllaliglvvlirriiftsskaekyelelekilkeYdewIvkgslppdlg 172
                  ++i+l+l++l++l  l  + +f+   +e    el++++++Y+  +++++   +++
  CTQ28277.1  27 YGIIVLSLIILTALSGLWSSGYFSEAHRETSGGELSVDYQRYARLMSETEFNIQIK 82 
                 678999******************************************99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1472.19
//
Query:       CTQ28278.1  [L=148]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-15   56.1   0.1    3.8e-15   55.6   0.1    1.3  1  DUF421    Protein of unknown function (DUF421)
  ------ inclusion threshold ------
       0.17   11.0   5.4       0.28   10.3   5.2    1.4  1  VP7       Glycoprotein VP7


Domain annotation for each model (and alignments):
>> DUF421  Protein of unknown function (DUF421)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.1   4.2e-19   3.8e-15       2      64 ..      85     148 .]      84     148 .] 0.95

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 4.2e-19
      DUF421   2 lidgkpvvlienGkldeknlkklrltvddLleqLRq.qgifslsdVkyailEtnGqlsvllkee 64 
                 ++dg+pv+++enG +  +++k ++++vdd+l   Rq +gi++l+ +k+ailE nGq+s+++++e
  CTQ28278.1  85 FLDGTPVIVVENGAVIDEKIKLVNISVDDILLAARQhHGIYELKAIKFAILERNGQISIIPEQE 148
                 99*********************************9459*********************9875 PP

>> VP7  Glycoprotein VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.2   3.2e-05      0.28      11      66 ..       7      62 ..       2      72 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.2e-05
         VP7 11 tvliliilliyilksltrkmdflitdtlivililseflraqnytidlyitGsveta 66
                + +i +illi    +  r +  l    li++li+se ++  + + d  +tGs+ t 
  CTQ28278.1  7 AAAIYLILLIIFKIAGRRTLMQLTNFDLILLLIISEATQQAMLSTDYSVTGSMLTI 62
                4478888887555566677777777779999**********************994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1293.50
//
Query:       CTQ28279.1  [L=331]
Description: Oxidoreductase, short chain dehydrogenase/reductase family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-40  137.5   1.1    4.9e-40  137.1   1.1    1.2  1  adh_short     short chain dehydrogenase
    2.7e-25   89.3   1.3    3.7e-25   88.8   1.3    1.1  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    3.2e-12   46.7   1.3    4.5e-12   46.3   1.3    1.2  1  KR            KR domain
     0.0098   15.8   0.8      0.015   15.2   0.8    1.3  1  3HCDH_N       3-hydroxyacyl-CoA dehydrogenase, NAD binding do
  ------ inclusion threshold ------
       0.12   11.9   0.7       0.21   11.1   0.7    1.3  1  NmrA          NmrA-like family
       0.25   10.4   1.3       0.38    9.8   1.3    1.3  1  GIDA          Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   1.1   1.7e-43   4.9e-40       2     186 ..       3     189 ..       2     198 .. 0.97

  Alignments for each domain:
  == domain 1  score: 137.1 bits;  conditional E-value: 1.7e-43
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 v+++tG+++G G+a+a ++a++G++v++++r e  l+e+ + +++ g k lai++Dv d+ +++++ ++++  lg +dv +nNA  t  +pf ++seee
  CTQ28279.1   3 VMVITGGTAGAGKATALRFARAGYHVALIARDETGLQETRQACERFGIKTLAISADVVDAGALQRAAAEVETTLGAIDVWINNAMTTVLAPFRQMSEEE 101
                 79************************************************************************************************* PP

                 HHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT..EEEEEEEESSBSSHH CS
   adh_short 101 wervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptg..irvnavaPGlvdTdm 186
                 ++rv ev + g+++ tra+l+ m+ + +G I++ +S  +  + + ++aY+ +Kaa++g+t++++ el  ++  i+ ++v+ ++++T+ 
  CTQ28279.1 102 FRRVTEVTYLGYVNGTRAALEVMIPRDRGVIIQAGSALAWRSIPLQSAYCGAKAAIRGFTDAVRTELMHEKshIQLTMVQLPGMNTAQ 189
                 *******************************************************************988888*******99999975 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   1.3   1.3e-28   3.7e-25       4     163 ..      11     172 ..       8     221 .. 0.85

  Alignments for each domain:
  == domain 1  score: 88.8 bits;  conditional E-value: 1.3e-28
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE..EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae..vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdra 98 
                    g G+a+A ++a++G++v+l  ++e + ++++++ e++g +  ++ +DV d  +++++++ev+ ++g +D+ +nna  +    +pf ++s+eef+r+
    CTQ28279.1  11 AGAGKATALRFARAGYHVALIARDETGLQETRQACERFGIKtlAISADVVDAGALQRAAAEVETTLGAIDVWINNAMTTVL--APFRQMSEEEFRRV 105
                   688************************99**********66445********************************99999..************** PP

                   HHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGT CS
  adh_short_C2  99 ldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkg 163
                    +v   ++++ ++aal++m ++  g i+   s  a r++p ++ay+ aKaa+ ++t ++  el +++
    CTQ28279.1 106 TEVTYLGYVNGTRAALEVMIPRdrGVIIQAGSALAWRSIPLQSAYCGAKAAIRGFTDAVRTELMHEK 172
                   *****************6654447********************************99988887754 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   1.3   1.5e-15   4.5e-12       2     168 ..       3     169 ..       2     181 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 1.5e-15
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 + +itGG+ g G+++a   a+ g  h++l++R++      +++ +++e+ g++  +++aDv d+ a++++ +e++++ ++i   i+ A+++  +++ +m
  CTQ28279.1   3 VMVITGGTAGAGKATALRFARAG-YHVALIARDE---TGLQETRQACERFGIKTLAISADVVDAGALQRAAAEVETTLGAIDVWINNAMTTVLAPFRQM 97 
                 679****************9998.59*******3...3445567889999************************************************* PP

                 -HHHHHHHHTTT....THHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapK....vkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqgl 168
                 ++e++++v++      v+G++   e++ +++  +++   S+ +    + q++Y  a a + ++ +  r++ +
  CTQ28279.1  98 SEEEFRRVTEVTylgyVNGTRAALEVMIPRDRGVIIQAGSALAWRSIPLQSAYCGAKAAIRGFTDAVRTELM 169
                 ********997622237777777777777999**************************99999876555443 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.8   5.1e-06     0.015       2      50 ..       3      54 ..       2      89 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.1e-06
                EEEE--SCCHHHHHHH..HHHTT-EEEEE-S-HHHHHHHHHHHHH.HHHCCT CS
     3HCDH_N  2 vaviGaGtmGagiaav..fasagleVvlvdiseealekalekiek.sleklv 50
                v vi  Gt Gag a++  fa+ag++V l+ ++e  l++ ++++e+  ++ l+
  CTQ28279.1  3 VMVITGGTAGAGKATAlrFARAGYHVALIARDETGLQETRQACERfGIKTLA 54
                7899999999997654339***********************9997444433 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.7     7e-05      0.21       2      75 ..       5      82 ..       4      91 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7e-05
                EESSTTSHHHHHHHHHHHHHT-EEEEEES-S..-SHHHHHHHHSTTEEE..ES-TT-HHHHHHHHTT-SEEEE---GG CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRdt..kselakslkeaGvelv..kgdlddkeslvealkgvdvvfsvtgfy 75
                +++G+T   Gk+ +  +++ag++v  + Rd+   +e+ ++ +  G +++  ++d+ d   l++a  +v++   ++ ++
  CTQ28279.1  5 VITGGTAGAGKATALRFARAGYHVALIARDEtgLQETRQACERFGIKTLaiSADVVDAGALQRAAAEVETTLGAIDVW 82
                689****************************8878999********9986788899***********99877666655 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.3   0.00013      0.38       2      33 ..       3      36 ..       2      74 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00013
                EEEE-SSHHHH..HHHHHHHHTT--EEEEES-GG CS
        GIDA  2 viViGgGhAGc..eAAlaaarlGakvlLithkld 33
                v+Vi gG AG   + Al  ar+G++v+Li+ +  
  CTQ28279.1  3 VMVITGGTAGAgkATALRFARAGYHVALIARDET 36
                89*****987633788999**********65544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2710.08
//
Query:       CTQ28280.1  [L=541]
Description: putative glycosidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-61  208.2   0.0      9e-61  206.3   0.0    1.7  1  Alpha-amylase   Alpha amylase, catalytic domain
     0.0034   17.5   0.0      0.007   16.5   0.0    1.6  1  Malt_amylase_C  Maltogenic Amylase, C-terminal domain
  ------ inclusion threshold ------
      0.013   14.6   0.0       0.02   14.0   0.0    1.1  1  hDGE_amylase    Glycogen debranching enzyme, glucanotransfera


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.3   0.0   1.5e-64     9e-61       1     333 [.      29     379 ..      29     381 .. 0.86

  Alignments for each domain:
  == domain 1  score: 206.3 bits;  conditional E-value: 1.5e-64
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHSTTSGGG CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifkspqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkkkgepkr 96 
                    GDL Gi +kL Y+++LG t++wl+P++  p +d gYdi+d  + dp+fGt +d+ eLi++a+e+g++vi+ lV+ Hts +h wf+ +++ + +p r
     CTQ28280.1  29 GDLAGIRQKLHYIRSLGATVLWLTPFYLTPLQDDGYDISDHLQPDPRFGTIADVIELIARARELGLRVIVELVIQHTSAQHPWFQAARRDPRSPWR 124
                    9*********************************************************************************************** PP

                    CCC-E.......ESS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCCCCCCCCTTT-SEEEETTCCCTTTCCCC...HCCH CS
  Alpha-amylase  97 dyyiwkegk.eekeppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkdvvkfwlekgidGfRlDvvkhvskveal...esng 188
                     yy w ++  e+++pp       ++s w++de+a++yy h+f+ + pdLn  ++ v  e++++++fwl+ g++GfRlD+++h+ k+++    ++  
     CTQ28280.1 125 PYYLWADRPpENDDPPMFPG--VEESVWRWDEQAGQYYRHMFYHHEPDLNLAHPPVIAEIENIITFWLQAGVSGFRLDAASHLVKQAGKgdeTRGY 218
                    *****988655555555544..899************************************************************87777755566 PP

                    CCHHHHHHHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTCEEES CS
  Alpha-amylase 189 eflheftqalnetvasrkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeeavtfl 284
                    + l++ +q +++      +++++gEv  + ++  r y + +   l+mvl+f  ++  + +      +++ a+ + ++l+ + +  +   +  v+ l
     CTQ28280.1 219 PLLTHLRQVVQRLN---PDAILLGEVDVAVED-YRHY-FGQGDRLQMVLNFWLNKYLYLSL-----AQQRAAPVVKALQAMVTP-P-DGCCFVNWL 302
                    78888899888876...***********8875.5555.55566789999999999887776.....333344455555444443.3.37999999* PP

                    --TTS--HHHHTTSSTTTT............................HHHHHHHHHCCCTSSSEEEEETTCCCT--- CS
  Alpha-amylase 285 gnHDqeRilsrlgddsaea............................ekklklaaillltlrGvpviYyGeEigmtg 333
                     nHD   +    ++++++                             ++++ la ++ll l+Gvpv  yG+Eigm +
     CTQ28280.1 303 RNHDELDLEGIGERNKRQVirtfapdksmsvyqrgvrrrlapmldgdTRRIALAHAILLALPGVPVMRYGDEIGMGD 379
                    ***9866665555555444666888888999***************99***************************75 PP

>> Malt_amylase_C  Maltogenic Amylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.2e-06     0.007       3      75 .]     460     535 ..     459     535 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.2e-06
                     EEE---S-TTEEEEEEEETTEEEEEEEESS-EEEEE--GGGTT-EEEETTTTEE---..--SS.EEEEE-TT-EEE CS
  Malt_amylase_C   3 fefleadnrkvlaYlReyedetilvvaNrsaqaveldlselagrvpvelfggeefpa..igel.ytltLppygfyw 75 
                     f++l  +++ vl  l ++e   +l +aN s+qave+ l+ la++ +  +++++ +++   g++  +l L  yg++w
      CTQ28280.1 460 FTLLTLKPDAVLGLLYRSESREVLMLANCSQQAVEVLLPPLAEGYWSPILEDKLYQDglHGGKdARLALSGYGYRW 535
                     566666777788888899999*******************************999973356778***********9 PP

>> hDGE_amylase  Glycogen debranching enzyme, glucanotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.3e-06      0.02      19     112 ..      29     114 ..      26     121 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.3e-06
                   -SHHHHHHHHHHHHHTT--EEEES--EEE-TT--TTSEEEEEEE-TTT-.....SSC.HHHHHHHHHHHHHH--EEEEEE--SEEETT-CCCCC CS
  hDGE_amylase  19 GpleeWekvlkeikekgYnmiHftPlqelGesnSpYSiadqleldkelfeekdkeekeedveklvkklekeygllsltDvVlnHtannskwlee 112
                   G l   +++l+ i++ g +++ +tP+      +  Y i+d+l+ d+++        + +dv +l+ +++ e+gl  ++ +V  Ht+ + +w + 
    CTQ28280.1  29 GDLAGIRQKLHYIRSLGATVLWLTPFYLTPLQDDGYDISDHLQPDPRFG-------TIADVIELIARAR-ELGLRVIVELVIQHTSAQHPWFQA 114
                   55666678899999999999999999999999999***********994.......7899*****9986.79*******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4119.69
//
Query:       CTQ28281.1  [L=60]
Description: PTS family enzyme IIBC component, cellobiose/salicin/arbutin-specific [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.055   13.8   0.1       0.11   12.8   0.1    1.5  2  GAF_3     GAF domain
       0.06   13.5   0.2      0.084   13.0   0.2    1.2  1  CinA_KH   Damage-inducible protein CinA KH domain


Domain annotation for each model (and alignments):
>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.3e-05      0.11      89     122 ..       1      34 [.       1      38 [. 0.94
   2 ?    1.5   0.0     0.038   3.4e+02      13      38 ..      32      57 ..      29      59 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
       GAF_3  89 vagrqviGvlalastkprafdaedlelleslArq 122
                 +++rq+i +la++ + p  ++a++++l++++A++
  CTQ28281.1   1 MVKRQTIALLAAEEQVPLVLTARQQALVDAVANR 34 
                 5789****************************97 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.038
       GAF_3 13 lvkllgaevgalllldedgnklqvaa 38
                ++++l ae+  +  +d+ + k+++ +
  CTQ28281.1 32 ANRMLPAERNPVSPVDKPRAKARAGS 57
                68999999999999999877776654 PP

>> CinA_KH  Damage-inducible protein CinA KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   9.4e-06     0.084      26      57 ..       4      36 ..       2      41 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.4e-06
                SSEEEEEEETTEEEEEEE...EE.HHHHHHHHH CS
     CinA_KH 26 nptlAiyakegevtvRltakaan.eeeaealia 57
                ++t+A++a e++v + lta+ +   +++++++ 
  CTQ28281.1  4 RQTIALLAAEEQVPLVLTARQQAlVDAVANRML 36
                67*****************87651445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 475.12
//
Query:       CTQ28282.1  [L=168]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-42  143.9   0.9    4.6e-42  143.7   0.9    1.0  1  DUF892           Domain of unknown function (DUF892)
  ------ inclusion threshold ------
      0.011   16.1   0.1      0.017   15.5   0.1    1.2  1  DUF4281          Domain of unknown function (DUF4281)
      0.055   13.4   0.8        1.1    9.1   0.8    2.1  1  Ferritin         Ferritin-like domain
       0.12   12.4   0.0       0.23   11.6   0.0    1.4  1  PPR_3            Pentatricopeptide repeat domain
       0.16   12.7   6.0       0.44   11.2   3.7    2.4  2  Vir_act_alpha_C  Virulence activator alpha C-term


Domain annotation for each model (and alignments):
>> DUF892  Domain of unknown function (DUF892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   0.9   1.3e-45   4.6e-42       4     158 ..       5     156 ..       2     157 .. 0.98

  Alignments for each domain:
  == domain 1  score: 143.7 bits;  conditional E-value: 1.3e-45
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-SS.HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------.-HHHHTTT-----------THHHHHHH...H CS
      DUF892   4 elfvdeLrDlyaaEkqllkalpkmakaaes.peLkaaleqHleeTegqierLeqvferlgesasekkcdamegliaegqelieeaaedeslkdaaliaa 101
                 e+++++LrD++a+Ekq++++l + ++++++ p+L+++leqHl eT++q+  L+++++r + s s+ k dam++++a gq+++ + ++de++k ++    
  CTQ28282.1   5 ENYHNWLRDAHAMEKQAESLLVATIRRLDNePQLRTRLEQHLYETRRQLSALQDIIARNHISRSALK-DAMSRVAALGQTIGIMLPGDEVIKVII---T 99 
                 89*****************************************************************.***********************9999...* PP

                 HHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      DUF892 102 aqavehyEiAsYgtLialAeqlgekeaaklLeqtleeekatdekltelaeslvnqea 158
                 a+ + h+E+A+Y+ L+++A+++g+++a+++Le +l+ee+ ++++l +++++l+ q++
  CTQ28282.1 100 AYVFAHFEVACYTALLTAAKRVGDHSAMHTLEGILAEERGMADWLLHYLPALTGQYL 156
                 ***************************************************999986 PP

>> DUF4281  Domain of unknown function (DUF4281)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.1   4.7e-06     0.017      16      85 ..      84     148 ..      72     150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.7e-06
     DUF4281  16 lmilaPrakvtrrvmesllpflvlallYlvllvaaklsevaaaasfsslegiaelfaneevlaaaWvhlL 85 
                 + i++P  +v + +++ ++++ +  ++Y++ll       ++ ++++s++  ++ ++a+e  +a + +h+L
  CTQ28282.1  84 IGIMLPGDEVIKVIITAYVFAHFEVACYTALL-----TAAKRVGDHSAMHTLEGILAEERGMADWLLHYL 148
                 56899*************************95.....466778999999999999**************9 PP

>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.8   0.00031       1.1      96     136 ..     108     148 ..       2     153 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00031
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin  96 teslrelielaeeegDpatadfledfleeqeeheweleall 136
                 ++ +  l   a+ +gD+   + le +l+e+   +++l ++l
  CTQ28282.1 108 VACYTALLTAAKRVGDHSAMHTLEGILAEERGMADWLLHYL 148
                 5678899999*********************9999998887 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.3e-05      0.23      13      33 ..     106     126 ..     104     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.3e-05
       PPR_3  13 ldvvtYthLLtayanagnkkl 33 
                 ++v  Yt+LLta++++g+  +
  CTQ28282.1 106 FEVACYTALLTAAKRVGDHSA 126
                 67899************9764 PP

>> Vir_act_alpha_C  Virulence activator alpha C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.5   8.9e+03      63      73 ..       5      15 ..       4      17 .. 0.78
   2 ?   11.2   3.7   0.00012      0.44      16      76 ..      34     151 ..      26     152 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.5
  Vir_act_alpha_C 63 eawieWcdeal 73
                     e++ +W+++a 
       CTQ28282.1  5 ENYHNWLRDAH 15
                     57889999986 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00012
  Vir_act_alpha_C  16 dpealieeLerrreeheekLaeyeeieerl......................................................eeargqyl.. 53 
                      ++++l++ Le+++ e +++L+ +++i +r                                                       ++++g++   
       CTQ28282.1  34 NEPQLRTRLEQHLYETRRQLSALQDIIARNhisrsalkdamsrvaalgqtigimlpgdevikviitayvfahfevacytalltaAKRVGDHSam 127
                      55799*******************9999999999999999999999999999999999999999999999999999999999986688888788 PP

  Vir_act_alpha_C  54 .vLrrgiryeeawieWcdealelL 76 
                       +L++ ++ e+++ +W+ + l +L
       CTQ28282.1 128 hTLEGILAEERGMADWLLHYLPAL 151
                      89**************99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       989  (0.055162); expected 358.6 (0.02)
Passed bias filter:                      762  (0.042501); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1232.87
//
Query:       CTQ28283.1  [L=71]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 537.56
//
Query:       CTQ28284.1  [L=61]
Description: hypothetical protein CH1034_220260 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-19   68.5  16.3    3.7e-10   39.7   5.2    2.9  3  KGG       Stress-induced bacterial acidophilic repeat motif


Domain annotation for each model (and alignments):
>> KGG  Stress-induced bacterial acidophilic repeat motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   5.2     2e-14   3.7e-10       1      21 []      10      30 ..      10      30 .. 0.98
   2 !   39.7   3.3   2.1e-14   3.8e-10       1      21 []      32      52 ..      32      52 .. 0.99
   3 ?   -0.3   1.0      0.08   1.4e+03      16      21 .]      54      59 ..      54      59 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 2e-14
         KGG  1 nFAnDpEkarEIGrKGGqaSh 21
                nFA+D+Eka+E+GrKGGq+S+
  CTQ28284.1 10 NFAEDREKASEAGRKGGQHSG 30
                9*******************8 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 2.1e-14
         KGG  1 nFAnDpEkarEIGrKGGqaSh 21
                nF+nDpE+a+E+G+KGG++Sh
  CTQ28284.1 32 NFKNDPERASEAGKKGGKNSH 52
                9*******************9 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.08
         KGG 16 GGqaSh 21
                GG+ S+
  CTQ28284.1 54 GGRKSG 59
                9**997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      101  (0.00563333); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 508.58
//
Query:       CTQ28285.1  [L=304]
Description: putative glutathionylspermidine synthase, with NAD(P)-binding Rossmann-fold domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-58  196.9   0.0    4.4e-58  196.6   0.0    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    2.6e-47  160.8   0.0    3.3e-47  160.5   0.0    1.1  1  adh_short     short chain dehydrogenase
    7.4e-10   39.0   0.0      1e-09   38.6   0.0    1.1  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.6   0.0   7.4e-62   4.4e-58       4     232 ..      69     300 ..      64     301 .. 0.95

  Alignments for each domain:
  == domain 1  score: 196.6 bits;  conditional E-value: 7.4e-62
                   TSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   sgIGra+A a+a+eGa+v++ +l ee+  +++v +l ++ g++ v l+ D+++e+ +++lv+++ve++g+l ilvnnag  +   + ++e++ e+fd
    CTQ28285.1  69 SGIGRAVAIAFAREGADVAINYLPEEQkdADEVIALIKAEGRTaVaLPGDIRSESFCQSLVADAVEQLGGLSILVNNAGRQQY-CETLEELTTEDFD 164
                   8*************************96656666666666655457************************************9.899999******* PP

                   HHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHH CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleele 193
                    ++++n+y+ f +++aalp++++g++i+n++sv+a +  p    y+ +Ka l  +t++lA++++++giRvNav+pgp  T ++s+  + de  +++ 
    CTQ28285.1 165 ATFKTNVYAPFWITRAALPHLQAGSAIINTTSVQAYKPSPILLDYAQTKACLAIFTKSLAKQVAKRGIRVNAVAPGPYWTVLQSSGGQPDEKVKQFG 261
                   *************************************************************************************99********** PP

                   HHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 194 araplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   + +p+gr g+p e+a +++ Lasd+ sy++Gq+   DgG
    CTQ28285.1 262 KDTPMGRPGQPVEIAPLYVTLASDACSYTSGQVWCSDGG 300
                   **************************************9 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.5   0.0   5.5e-51   3.3e-47       1     188 [.      60     248 ..      60     254 .. 0.95

  Alignments for each domain:
  == domain 1  score: 160.5 bits;  conditional E-value: 5.5e-51
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE..EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGC CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv..vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfsel 96 
                 k +l+tG++sGIGra+a ++a+eGa+v++  + ++++++ ev++ +k+eg++a+a+++D+++++ ++ lv++av++lg+l +LvnNAG  +  ++ +el
  CTQ28285.1  60 KKALITGGDSGIGRAVAIAFAREGADVAInyLPEEQKDADEVIALIKAEGRTAVALPGDIRSESFCQSLVADAVEQLGGLSILVNNAGRqQYCETLEEL 158
                 689**************************977888999***************************************************6666788999 PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 + e++++++++N+ ++f++tra+lp++  q + +I+n++Sv++ +p++ +  Y+ +Ka +a +t+slak++a++girvnavaPG+  T ++ 
  CTQ28285.1 159 TTEDFDATFKTNVYAPFWITRAALPHL--QAGSAIINTTSVQAYKPSPILLDYAQTKACLAIFTKSLAKQVAKRGIRVNAVAPGPYWTVLQS 248
                 99************************5..58889**************************************************99888765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   1.7e-13     1e-09       4     167 ..      63     227 ..      61     242 .. 0.86

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 1.7e-13
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------.---TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr.dklleemt 101
                 litGG  g+G+++a   a++ga   +    +  +++d+++ ia ++a g +  +++ D+ +++  ++l++++ ++ + ++  ++ Ag  +  ++lee+t
  CTQ28285.1  63 LITGGDSGIGRAVAIAFAREGADVAINYLPE--EQKDADEVIALIKAEGRTAVALPGDIRSESFCQSLVADAVEQLGGLSILVNNAGRQQyCETLEELT 159
                 9********************9877777777..57888899**********************************************9995699***** PP

                 HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqg 167
                 +ed+++ ++  v +   + ++  +  +    ++ ++S+ +   s+   +Ya + a+l  + ++ ++q 
  CTQ28285.1 160 TEDFDATFKTNVYAPFWITRAALPhlQAGSAIINTTSVQAYKPSPILLDYAQTKACLAIFTKSLAKQV 227
                 ************997766666555478889999*******************9998876666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2544.17
//
Query:       CTQ28286.1  [L=81]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-47  160.0   5.1    1.3e-47  159.8   5.1    1.0  1  DUF2543        Protein of unknown function (DUF2543)
  ------ inclusion threshold ------
      0.016   14.7   0.3      0.017   14.6   0.3    1.1  1  Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain


Domain annotation for each model (and alignments):
>> DUF2543  Protein of unknown function (DUF2543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.8   5.1   1.5e-51   1.3e-47       1      81 []       1      81 []       1      81 [] 0.99

  Alignments for each domain:
  == domain 1  score: 159.8 bits;  conditional E-value: 1.5e-51
     DUF2543  1 mnneiplkyydiadeyatesaePvseeerdalahyfqllitrltnneeiseeaqkemareagideqrideiaeflnqWGne 81
                m+n+iplk+ydi+dey+te+a+Pv++eerdala+yfqlli+rltnneei+eeaq+emarea+i+e+rid+ia+flnqWGne
  CTQ28286.1  1 MSNDIPLKFYDIVDEYETEAAAPVKDEERDALARYFQLLIARLTNNEEIDEEAQREMAREAAINENRIDDIANFLNQWGNE 81
                9*******************************************************************************8 PP

>> Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.3   1.9e-06     0.017     108     154 ..       9      55 ..       6      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-06
  Mannitol_dh_C 108 iraivkkllteevapllkkvdeqdleeYadkiieRFsN.pyikdtver 154
                    ++ iv+++ te+ ap+ ++ +++ l+ Y +++i+R +N ++i ++ +r
     CTQ28286.1   9 FYDIVDEYETEAAAPVKDE-ERDALARYFQLLIARLTNnEEIDEEAQR 55 
                    67899***********999.***************9871567666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1286  (0.0717274); expected 358.6 (0.02)
Passed bias filter:                      724  (0.0403815); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 640.88
//
Query:       CTQ28287.1  [L=297]
Description: LysR family transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-40  138.5   3.1    2.7e-40  138.0   3.1    1.2  1  LysR_substrate  LysR substrate binding domain
      3e-17   62.3   0.3    5.8e-17   61.4   0.3    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    0.00026   21.0   2.9    0.00053   20.0   0.3    2.2  2  HTH_29          Winged helix-turn helix
    0.00059   19.9   2.1      0.016   15.3   0.4    2.5  2  HTH_28          Helix-turn-helix domain
     0.0018   18.0   0.6      0.059   13.2   0.1    2.5  2  HTH_23          Homeodomain-like domain
     0.0038   17.0   0.1      0.029   14.2   0.1    2.4  2  HTH_IclR        IclR helix-turn-helix domain
  ------ inclusion threshold ------
       0.02   14.8   0.6       0.67    9.9   0.1    2.6  2  MarR_2          MarR family
      0.033   14.0   1.4      0.068   13.0   0.1    2.1  2  HTH_8           Bacterial regulatory protein, Fis family
      0.056   13.4   0.3        1.2    9.2   0.2    2.8  3  HTH_Crp_2       Crp-like helix-turn-helix domain
       0.17   11.4   0.2       0.41   10.2   0.0    1.8  2  HTH_24          Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   3.1   1.5e-43   2.7e-40       2     208 ..      86     290 ..      85     291 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 1.5e-43
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                     + ++g+Lr+++ + +a +l+ pll++f+aryP ++lel  ++  + + l+ e+ +D+air  + +++g +ar+L+  + +l+a+p     ++ p+
      CTQ28287.1  86 ADPSGTLRVACAHFTAMQLISPLLPDFLARYPLLRLELDINN--HPVSLIGER-IDVAIRITDNPEAGAIARRLGVCRSLLCAAPRW-MRQHGPL 176
                     679***************************************..*********.********************************8.7778888 PP

                     .CGGGGCTSEEEEESTTST.HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEE CS
  LysR_substrate  97 .sledLadeplilleegsg.lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyr 188
                      +++dL++++++l+++ ++ ++++ ++  rea +++++ l++   + ll+++ aG+Gia+lp++ +r ++a+g l+ ++lpe++++   +y +y 
      CTQ28287.1 177 tTPDDLQRHNCLLYSHFASqHWQFSDAQGREASVAVNGNLSAGISSLLLEAAVAGCGIAMLPELEARGAIASGTLE-VVLPEWTPKaLSVYGIYL 270
                     8*************977776888888888889********************************************.****************** PP

                     TTCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidflreal 208
                     ++++++  +  f+d+l+++l
      CTQ28287.1 271 SRDYQPDGLPLFLDALQRRL 290
                     ****************9986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.3   3.2e-20   5.8e-17       7      60 .]      10      63 ..       6      63 .. 0.95

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 3.2e-20
                HHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  7 fvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                 + ++e gs+++AA++Lg+s p vsr + ++E++ g++L++R++r+l+LT+aGe
  CTQ28287.1 10 YLRICELGSLSAAARALGMSRPMVSRYLEQMESWAGARLIHRSTRRLTLTPAGE 63
                56899************************************************7 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.3     3e-07   0.00053       6      60 ..      11      61 ..       7      64 .. 0.70
   2 ?    0.9   0.1      0.26   4.7e+02      17      27 ..     151     161 ..     149     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3e-07
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprnrlsee 60
                l + e +s  s +A++lg+sr+ v r+l+ +e +  a l++ r+++r+   l+++
  CTQ28287.1 11 LRICELGS-LSAAARALGMSRPMVSRYLEQMESWAGARLIH-RSTRRLT--LTPA 61
                55555555.9********************55555444665.5556653..6665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.26
      HTH_29  17 qiAkllglsrr 27 
                  iA++lg++r+
  CTQ28287.1 151 AIARRLGVCRS 161
                 59*******97 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.4   9.1e-06     0.016      13      50 ..      15      54 ..       2      55 .. 0.82
   2 ?    3.8   0.1     0.036        65      15      27 ..     149     161 ..     135     174 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.1e-06
      HTH_28 13 h..svreaArelgisrrtvyrWikryee.gGiagLvprrrr 50
                +  s ++aAr+lg+sr +v+r + + e+  G a L +r+ r
  CTQ28287.1 15 ElgSLSAAARALGMSRPMVSRYLEQMESwAG-ARLIHRSTR 54
                44499***********************888.899999976 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.036
      HTH_28  15 vreaArelgisrr 27 
                 + ++Ar+lg++r+
  CTQ28287.1 149 AGAIARRLGVCRS 161
                 679********98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   3.3e-05     0.059      17      40 ..      16      39 ..       3      47 .. 0.83
   2 ?    2.5   0.1     0.072   1.3e+02      22      32 ..     151     161 ..     150     165 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.3e-05
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkr 40
                  s +++Ar+Lg+sr  v+r+l+ 
  CTQ28287.1 16 LGSLSAAARALGMSRPMVSRYLEQ 39
                56899****************976 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.072
      HTH_23  22 eIAreLgvsrr 32 
                 +IAr+Lgv r+
  CTQ28287.1 151 AIARRLGVCRS 161
                 69******998 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.6e-05     0.029      20      44 ..      18      42 ..      11      44 .. 0.90
   2 ?   -1.2   0.0         1   1.8e+03      22      33 ..     150     161 ..     144     161 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
                BHHHHHHHHTS-HHHHHHHHHHHHH CS
    HTH_IclR 20 tlselArrtglpkStvhRlLqtLve 44
                +ls  Ar++g++++ v+R+L  ++ 
  CTQ28287.1 18 SLSAAARALGMSRPMVSRYLEQMES 42
                89******************99985 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1
                 HHHHHHHTS-HH CS
    HTH_IclR  22 selArrtglpkS 33 
                   +Arr+g+ +S
  CTQ28287.1 150 GAIARRLGVCRS 161
                 689*****8776 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00037      0.67      23      47 ..      18      42 ..      11      55 .. 0.89
   2 ?    2.4   0.0      0.08   1.4e+02      18      35 ..     147     160 ..     134     166 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00037
                EHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsrilkrLva 47
                + ++ ar+lg+s++ vsr l+ +++
  CTQ28287.1 18 SLSAAARALGMSRPMVSRYLEQMES 42
                67889*****************997 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.08
                 TTSEEEHHHHHHHHTSSH CS
      MarR_2  18 pgrdltvgelarrlglsk 35 
                 p     +g++arrlg+ +
  CTQ28287.1 147 P----EAGAIARRLGVCR 160
                 4....599*******965 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   3.8e-05     0.068      19      37 ..      17      35 ..      16      40 .. 0.85
   2 ?   -1.4   0.1       1.2   2.1e+03      25      33 ..     153     161 ..     151     163 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.8e-05
                T-HHHHHHHHTS-HHHHHH CS
       HTH_8 19 GnkskAArlLGisRrtLyr 37
                G +s+AAr LG+sR  + r
  CTQ28287.1 17 GSLSAAARALGMSRPMVSR 35
                789***********99887 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.2
                 HHHHTS-HH CS
       HTH_8  25 ArlLGisRr 33 
                 Ar+LG+ R+
  CTQ28287.1 153 ARRLGVCRS 161
                 9****9776 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00066       1.2      28      47 ..      23      42 ..      18      59 .. 0.82
   2 ?    0.4   0.0      0.36   6.5e+02      26      49 ..     151     174 ..     118     184 .. 0.80
   3 ?   -1.6   0.0       1.6   2.8e+03      41      59 ..     236     253 ..     235     257 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00066
                HHHTTSSHHHHHHHHHHHHH CS
   HTH_Crp_2 28 AsmlGltretvsrilseLkr 47
                A+ lG++r  vsr l +++ 
  CTQ28287.1 23 ARALGMSRPMVSRYLEQMES 42
                899************99974 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.36
                 HHHHHTTSSHHHHHHHHHHHHHTT CS
   HTH_Crp_2  26 elAsmlGltretvsrilseLkreg 49 
                  +A++lG+ r+ +  + + ++++g
  CTQ28287.1 151 AIARRLGVCRSLLCAAPRWMRQHG 174
                 699999999998888888888887 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.6
                 HHHHHHHTTSEEETEEEEE CS
   HTH_Crp_2  41 ilseLkreglisrgrriri 59 
                 +l eL+ +g i  g+ +++
  CTQ28287.1 236 MLPELEARGAIASGT-LEV 253
                 57799******9775.554 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00023      0.41      24      42 ..      23      41 ..      18      42 .. 0.90
   2 ?   -3.8   0.0       5.5   9.8e+03      23      29 ..     152     158 ..     151     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00023
      HTH_24 24 AerlglSpstvnrrlkrLe 42
                A++lg+S++ v+r+l+++e
  CTQ28287.1 23 ARALGMSRPMVSRYLEQME 41
                99***************98 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.5
      HTH_24  23 LAerlgl 29 
                 +A+rlg+
  CTQ28287.1 152 IARRLGV 158
                 8999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2496.20
//
Query:       CTQ28288.1  [L=283]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.9e-08   32.5   0.0    7.8e-07   29.3   0.0    2.1  1  Lactamase_B  Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   4.4e-11   7.8e-07       3     197 .]      34     218 ..      33     218 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 4.4e-11
                  CCSSEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTC CS
  Lactamase_B   3 pdpvnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllag 100
                  ++ vns+l+ g+ +++L+D+ +s   + ++     +++++k+++++++T +++D ++gl+ lv+a++ + ++   e  +++   +     ++g     
   CTQ28288.1  34 LFAVNSTLVSGPHEAVLFDAQFSVKDGEKL--VEMIKKNGKPLSRIVITSGDPDFYFGLEPLVKAFPQAEVVATPEVVKHIAATKAAKLAYWGP-QMK 128
                  6789***********************998..899************************************99999999999999777777764.455 PP

                  HCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHHCHSEEEESS CS
  Lactamase_B 101 vsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaevrdpsdaekyldsllklaglkaevlvpgH 197
                  + a+  + ++  l+ n + + + +vt  ++h    + v+++  k+++ G  +  g ++++        +  p++ ++++++l+++++l + +++pgH
   CTQ28288.1 129 DGAPTQVYVPQALEANSFTIDGEKVTIMQPHDYAAF-VWIRANKTILGGTGVAWGMHLWTAD------TQTPASRQQWRNTLDQMIALHPQRVIPGH 218
                  566667788888888888999999988888887766.5667777777776666666666666......99999999999999*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2369.78
//
Query:       CTQ28289.1  [L=46]
Description: 30S ribosomal subunit protein S22 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-33  112.7   2.0    7.6e-33  112.6   2.0    1.0  1  Ribosomal_S22  30S ribosomal protein subunit S22 family


Domain annotation for each model (and alignments):
>> Ribosomal_S22  30S ribosomal protein subunit S22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   2.0   4.3e-37   7.6e-33       1      44 [.       1      44 [.       1      46 [] 0.99

  Alignments for each domain:
  == domain 1  score: 112.6 bits;  conditional E-value: 4.3e-37
  Ribosomal_S22  1 mKSNrQARHlLGLdyKlSrQkKvVlEGDkesvvNhinaTGRKRr 44
                   mKSN+QARHlLGL+yKlSrQkKvVlEGD+e+++Nhi+aTGRKRr
     CTQ28289.1  1 MKSNHQARHLLGLNYKLSRQKKVVLEGDEETTINHIHATGRKRR 44
                   9******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 352.38
//
Query:       CTQ28290.1  [L=565]
Description: malate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     6e-107  356.7   0.2   8.2e-107  356.3   0.2    1.2  1  Malic_M   Malic enzyme, NAD binding domain
    1.6e-78  262.7   0.0      3e-78  261.8   0.0    1.5  1  malic     Malic enzyme, N-terminal domain


Domain annotation for each model (and alignments):
>> Malic_M  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.3   0.2  9.2e-111  8.2e-107       1     257 [.     271     530 ..     271     531 .. 0.99

  Alignments for each domain:
  == domain 1  score: 356.3 bits;  conditional E-value: 9.2e-111
                 THHHHHHHHHHHHHHHHHH-S-GGG--EEEEC-SHHHHHHHHHHHHHHHTTTS-HHHHHTTEEEEETTEE-BTT-S---TTTGGGSBS--SS--S.... CS
     Malic_M   1 iqgTaavalagllaalkitgkklseqkivvlGaGsagiGiaeqivealvkeGlseeeakkkiylvDrkGLltedrekleeekkpfakkkeelkeak... 96 
                 iqgTaav++++l+aa + +g++lseqkiv+lGaGsag+Giaeqi++++v+eGlseeea++++++vDr GLlt+++ +l ++++++++k+e+l++++   
  CTQ28290.1 271 IQGTAAVTVGTLIAASRGAGSQLSEQKIVFLGAGSAGCGIAEQIIAQIVREGLSEEEARQRVFMVDRFGLLTDGMPNLLPFQNKLVQKREQLQSWDtts 369
                 9**********************************************************************************************9999 PP

                 ...SHHHHHHHH--SEEEE-SSSSS-S-HHHHHHHHHHSSS-EEEE--SSGGGSSS-HHHHHHHTTT-SEEEESS----EEETSEEE--EE--GGGTHH CS
     Malic_M  97 dkltLeevvkkvkptvliGlsgvagafteeivremaksterPiilplSNPtskaEataedvlkwtdgkalvasGsPfkpvelngktyeigQaNNayifP 195
                 + l+L++vv++vkp++liG+sg++g+fteei+rem+k+++rPi++plSNPts++Eat++++l+wtdg+alva+GsPf+pv+++gk+y i+Q+NN+yifP
  CTQ28290.1 370 EALSLLDVVRNVKPNILIGVSGQPGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQNILSWTDGEALVATGSPFSPVTVKGKQYPIAQCNNSYIFP 468
                 99************************************************************************************************* PP

                 HHHHHHHHTT-SS--HHHHHHHHHHHHTT--HHHHHTT-SS--GGGHHHHHHHHHHHHHHHH CS
     Malic_M 196 glglgvivarakritdemllaaaealaelvseeelkegsllPelseirevslkvavavakaa 257
                 g+glgvi+++a+r+tdeml+aa+e+la+     +++eg++lPel++i+ vs+++a+av k+a
  CTQ28290.1 469 GIGLGVIASGASRVTDEMLMAASETLAQHSPLVNNGEGPVLPELKDIQTVSRAIAFAVGKVA 530
                 **********************************************************9988 PP

>> malic  Malic enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.8   0.0   3.3e-82     3e-78       1     182 []      81     261 ..      81     261 .. 0.99

  Alignments for each domain:
  == domain 1  score: 261.8 bits;  conditional E-value: 3.3e-82
                 HTTECCCCCCHHCCCHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS.SS..EEEEE-SSSBTTTBS-GHHHHHHHHHHHHHH CS
       malic   1 qeknetlfykllkekleellpivYtPtvgeacqeyseeyrkarglylsikdkekikeilknlpeedvkvivvtdgeriLGlGdlGvagvgimvGKlaLy 99 
                 q++netlfy+l+ ++lee++p++YtPtvg+ac+++se+yr+arg+++s+++++++++il+n+p+++vkvivvtdgeriLGlGd+G++g+gi++GKl+Ly
  CTQ28290.1  81 QDTNETLFYRLIGNHLEEMMPVIYTPTVGAACERFSEIYRRARGVFISYQNRHNLDDILQNVPNHNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLY 179
                 689************************************************************************************************ PP

                 HHHHS-EGGGEEEEEECS-BS.HHHHC.TT..S.SSB...SHHHHHHHHHHHHHHHHHHGCTSEEEE-S--CCHHHHHHHHHC CS
       malic 100 talagidPekvlpvvldvgtnneelledplYlGlrkkRvkgeeydefvdefveavkelfppkaliqfEDfkaknafeileryr 182
                 t+++gi+P+ +lp+vldvgtnn++ll+dplY+G+r++R++++ey++fvd++++a+k+++ p++l+qfEDf++kna+ +l+ryr
  CTQ28290.1 180 TTCGGISPAYTLPIVLDVGTNNQQLLDDPLYMGWRHPRITDDEYYQFVDDVIQAIKARW-PDVLLQFEDFAQKNAMPLLNRYR 261
                 ***********************************************************.**********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4079.59
//
Query:       CTQ28291.1  [L=235]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1751.68
//
Query:       CTQ28292.1  [L=571]
Description: putative transporter ATP-binding component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-42  144.2   0.0    3.8e-25   89.0   0.0    3.8  3  ABC_tran      ABC transporter
    2.4e-13   50.6  12.9     0.0044   16.9   0.7    4.2  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    2.2e-09   37.1   0.4       0.24   10.8   0.0    4.4  4  SMC_N         RecF/RecN/SMC N terminal domain
    8.9e-07   29.4   7.8    0.00028   21.3   0.2    3.6  3  AAA_16        AAA ATPase domain
    1.3e-06   28.4   0.0      0.051   13.7   0.0    3.5  3  MMR_HSR1      50S ribosome-binding GTPase
    3.3e-06   27.1   0.1      0.019   14.9   0.0    2.7  3  RsgA_GTPase   RsgA GTPase
      2e-05   24.2   3.8      0.034   13.9   0.2    3.0  3  AAA_29        P-loop containing region of AAA domain
    3.1e-05   23.9   0.0      0.026   14.2   0.1    2.5  2  AAA_15        AAA ATPase domain
    0.00021   21.2   0.4       0.14   12.1   0.2    2.6  2  NACHT         NACHT domain
    0.00025   21.3   0.1       0.23   11.7   0.1    2.9  2  AAA_22        AAA domain
    0.00028   21.4   3.5        0.2   12.1   0.3    3.1  3  AAA_23        AAA domain
     0.0011   19.1   1.8       0.69   10.2   0.3    3.7  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
     0.0021   18.0   1.6     0.0048   16.9   1.6    1.5  1  ABC_tran_Xtn  ABC transporter
     0.0022   17.7   0.0       0.38   10.4   0.0    2.3  2  ATP-synt_ab   ATP synthase alpha/beta family, nucleotide-bind
     0.0046   17.2   0.0        4.7    7.4   0.0    3.0  3  AAA_28        AAA domain
     0.0091   16.4   0.0        5.4    7.4   0.0    2.6  2  RNA_helicase  RNA helicase
  ------ inclusion threshold ------
      0.011   15.0   1.1        2.1    7.5   0.0    2.7  3  DUF2813       Protein of unknown function (DUF2813)
      0.023   14.4   0.2        0.6    9.8   0.1    2.4  2  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
      0.048   13.2   0.9        3.1    7.3   0.1    3.0  3  AAA_25        AAA domain
      0.049   12.8   0.9        2.3    7.3   0.1    2.3  2  DUF815        Protein of unknown function (DUF815)
      0.052   12.8   0.0        4.5    6.4   0.0    2.4  2  KAP_NTPase    KAP family P-loop domain
      0.054   12.8   2.2        8.7    5.6   0.1    3.1  3  Zeta_toxin    Zeta toxin
      0.067   13.3   0.0        1.4    8.9   0.0    2.4  2  DUF87         Helicase HerA, central domain
      0.087   13.4   0.0         11    6.6   0.1    2.7  2  AAA_18        AAA domain
       0.14   11.1   0.3       0.82    8.6   0.1    2.0  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
       0.14   11.5   0.4        4.5    6.6   0.1    2.6  3  Mg_chelatase  Magnesium chelatase, subunit ChlI


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0   5.5e-28   3.8e-25       2     136 ..      21     153 ..      20     154 .. 0.80
   2 ?    1.0   0.0      0.81   5.6e+02      84     118 ..     241     284 ..     166     299 .. 0.51
   3 !   49.0   0.0   1.2e-15   8.3e-13       8     137 .]     320     443 ..     317     443 .. 0.78

  Alignments for each domain:
  == domain 1  score: 89.0 bits;  conditional E-value: 5.5e-28
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTC.HHHHHHHSTTGGTTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvrenesdee.iekalsklglkelkd 99 
                 + +s++lk+g +++++G+nG+GKStLl++l g l pt+G++ l g+ l  + +++l + + + +  + +   l +  +e++++ +e++l+++g +    
  CTQ28292.1  21 NSLSFTLKKGDRIGLIGHNGCGKSTLLQVLDGTLAPTSGSVSLAGQCLMARVEQHLPEALHTQSLLQAVLAPLPADAREAQRWlAERLLAQMGFTP--- 116
                 789*****************************************9999996666666655544443333333323333444445777777777555... PP

                 BGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 100 tvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  v+++++++LSgGq  r+ laral+++p+llllDEp 
  CTQ28292.1 117 AVMEQQTATLSGGQHTRLLLARALIRQPDLLLLDEPG 153
                 8888899****************************95 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.81
                 C.........HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHH CS
                 x.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 e.........iekalsklglkelkdtvvksspssLSgGqkqrva 118
                 +          e++++k ++ e++  ++k+++++LS G   r++
  CTQ28292.1 241 RlatwgrvydNEDLARKAKQMEKQVARLKDEQTELSVGPPWRLV 284
                 12222333333444444444445555555556777777665555 PP

  == domain 3  score: 49.0 bits;  conditional E-value: 1.2e-15
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH.......HHHTCHHHHHHHSTTGGTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren.......esdeeiekalsklglkelk 98 
                 l+ g +vai+G+nG GKS+Ll+ll +++++++              + + r + g++ q+ +ql +e ++ e        +++++ + +++ +g    +
  CTQ28292.1 320 LRSGDRVAIMGRNGGGKSSLLRLLWQQMNNASPLPG---------LRLHPRLHPGYYDQTlAQLPDEASLLEAltpfapsADTRKRALIAAGFGWAR-H 408
                 789************************987554443.........3445566666666665555555556565666665577777888888888666.6 PP

                 CBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  99 dtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  ++v    s+LSgG+++r+  + + l + +llllDEpt+
  CTQ28292.1 409 SQKV----STLSGGERSRLLFVGLSLARYSLLLLDEPTN 443
                 6666....******************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   1.7e-05     0.011       3      21 ..      34      52 ..      33      62 .. 0.91
   2 !   16.9   0.7   6.4e-06    0.0044     246     303 .]     135     186 ..     124     186 .. 0.79
   3 !   12.1   0.1   0.00019      0.13       3      21 ..     327     345 ..     326     380 .. 0.85
   4 !   12.4   0.1   0.00015       0.1     236     302 ..     414     474 ..     407     475 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.7e-05
      AAA_21  3 vliGpNgsGKSnLLdaldl 21
                +liG Ng+GKS+LL+ ld+
  CTQ28292.1 34 GLIGHNGCGKSTLLQVLDG 52
                69***************86 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 6.4e-06
      AAA_21 246 alltallralkkgsllliDEpEngLHPkllrrll..ellkelsrngaQviltTHSpllld 303
                  l+ al+r++   +lll+DEp n+L+    ++ll  e + ++ +  + ++l++H+++lld
  CTQ28292.1 135 LLARALIRQP---DLLLLDEPGNHLDL---PTLLwlESFLQTWQ--GSFVLVSHDNTLLD 186
                 4555555555...9*************...99996777766655..************97 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00019
      AAA_21   3 vliGpNgsGKSnLLdaldl 21 
                 ++ G+Ng GKS+LL++l+ 
  CTQ28292.1 327 AIMGRNGGGKSSLLRLLWQ 345
                 688**************75 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.00015
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                  lS G ++ l ++ + l++    slll+DEp n+L+ +  + l++ l++       v+l++H+  l+
  CTQ28292.1 414 TLSGGERSRLLFVGLSLARY---SLLLLDEPTNHLDMEGKAALAQTLRDYPG---GVLLVSHDRQLI 474
                 57888888866666666666...9************9888888888866544...677777776555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0032       2.2      28      44 ..      34      50 ..      21      61 .. 0.84
   2 ?    5.6   0.0     0.014       9.7     135     206 ..     117     189 ..      72     200 .. 0.80
   3 !    7.6   0.0    0.0033       2.3      27      42 ..     326     341 ..     312     351 .. 0.86
   4 !   10.8   0.0   0.00035      0.24     135     205 ..     413     477 ..     384     487 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0032
                EEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 28 aivGpNGSGKsnlldAi 44
                 ++G+NG+GKs ll+ +
  CTQ28292.1 34 GLIGHNGCGKSTLLQVL 50
                589********998765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.014
                 T.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-S CS
                 x.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekad 206
                         +LSgG+ t     Ll+A   +++  l llDe   +LD      + ++l++ +    f+ +s+++++l  + 
  CTQ28292.1 117 AvmeqqtaTLSGGQHT----RLLLARALIRQPDLLLLDEPGNHLDLPTLLWLESFLQTWQ--GSFVLVSHDNTLLDAVT 189
                 3444444489****98....7888888899999*************99999999999887..78999999998887665 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0033
                 EEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlld 42 
                  ai+G+NG GKs+ll 
  CTQ28292.1 326 VAIMGRNGGGKSSLLR 341
                 68***********985 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00035
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                 ++LSgGe++     Llf   +  + +l llDe   +LD +  +++a+ l+       ++ +s+++++++++
  CTQ28292.1 413 STLSGGERS----RLLFVGLSLARYSLLLLDEPTNHLDMEGKAALAQTLRDYP--GGVLLVSHDRQLISES 477
                 579****98....788888889999************************9988..7888888888877665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.2     4e-07   0.00028      28     127 ..      34     140 ..      19     179 .. 0.64
   2 ?   -0.1   0.1       1.5   1.1e+03      53      98 ..     220     269 ..     199     309 .. 0.57
   3 !   10.2   0.2    0.0011      0.74      18     119 ..     319     423 ..     311     553 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4e-07
      AAA_16  28 llsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala...........avpelag 113
                  l+G+ G+GKs+l++ l   l  + g + l+g+c       +  + l +al + +ll+++l+++ ++++ea r   e+ la           +++ l+g
  CTQ28292.1  34 GLIGHNGCGKSTLLQVLDGTLAPTSGSVsLAGQCLMA----RVEQhLPEALHTQSLLQAVLAPLPADAREAQRWLAERLLAqmgftpavmeqQTATLSG 128
                 489***************9888885444477777666....2222288999999999999999555444444444344444778988766444444444 PP

      AAA_16 114 aeasrllellkrll 127
                    ++ + ll+r+l
  CTQ28292.1 129 G--QHTRLLLARAL 140
                 4..44444444555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.5
      AAA_16  53 giflrgkcdql......esaipysalaqalareellrqlldeaesaeleawr 98 
                   +lr k++q        sa++++++ ++ ++e+l r+ ++++++  +++ +
  CTQ28292.1 220 SAALRHKAEQKeidrvsASARRLATWGRVYDNEDLARKAKQMEKQ--VARLK 269
                 444444444443332322223445577777777777777777333..22222 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0011
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekd........ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.. 106
                 r+rsg+   v + G  G GKssl+r l ++++ +        +  +  g +dq         laq+ ++ +ll++l   a s +  + r+ + +  +  
  CTQ28292.1 319 RLRSGD--RVAIMGRNGGGKSSLLRLLWQQMNNAsplpglrlHPRLHPGYYDQT--------LAQLPDEASLLEALTPFAPS-ADTRKRALIAA--Gfg 404
                 566664..699******************9999988887766666677777777........77777776666666433222.33333333333..233 PP

      AAA_16 107 ......avpelagaeasrl 119
                        v+ l+g e+srl
  CTQ28292.1 405 warhsqKVSTLSGGERSRL 423
                 6666665555555555554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0011      0.77       1      24 [.      32      55 ..      32      76 .. 0.85
   2 ?   -2.7   0.0       9.1   6.3e+03      45      55 ..     143     153 ..     120     235 .. 0.61
   3 !   13.7   0.0   7.4e-05     0.051       1      44 [.     325     368 ..     325     555 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
                EEEEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltgeka 24
                +++++G+   GKStL++ l g+ a
  CTQ28292.1 32 RIGLIGHNGCGKSTLLQVLDGTLA 55
                699*************99977654 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 9.1
                 TEEEEEEECGG CS
    MMR_HSR1  45 gkeielvDtpG 55 
                 ++++ l+D pG
  CTQ28292.1 143 QPDLLLLDEPG 153
                 45666666666 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 7.4e-05
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEET CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklk 44 
                 +vai+Gr   GKS+L++ l ++   +s  pg  ++++ +   ++
  CTQ28292.1 325 RVAIMGRNGGGKSSLLRLLWQQMNNASPLPGLRLHPRLHPGYYD 368
                 69*******************99999999998888877765544 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.8e-05     0.019      90     131 ..      20      62 ..       5      92 .. 0.86
   2 ?   -2.8   0.0       7.2     5e+03     132     160 ..     124     153 ..      95     155 .. 0.73
   3 !    9.2   0.0    0.0015         1      99     124 ..     323     348 ..     310     352 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.8e-05
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  +++l+  lk+ + + l+G+ G GKStL+ +l+++l    g+vs
   CTQ28292.1  20 FNSLSFTLKKgDRIGLIGHNGCGKSTLLQVLDGTLAPTSGSVS 62 
                  567888888878899*****************99887777776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.2
                  -----------..SEEEEEETTTEEEESS-S CS
  RsgA_GTPase 132 eklgrGkhTTt..avellelaegglliDtPG 160
                  ++l+ G+hT    a+ l++ + + ll D PG
   CTQ28292.1 124 ATLSGGQHTRLllARALIRQP-DLLLLDEPG 153
                  445668888642256666666.888888888 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0015
                  TSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpele 124
                  ++ ++++G  G GKS+L+  l ++++
   CTQ28292.1 323 GDRVAIMGRNGGGKSSLLRLLWQQMN 348
                  47889**************9988765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2     5e-05     0.034      14      43 ..      22      51 ..      18      62 .. 0.73
   2 ?   -2.6   0.1       7.1   4.9e+03      37      43 ..     183     189 ..     182     191 .. 0.85
   3 !   10.3   0.0   0.00064      0.44      16      39 ..     317     340 ..     311     348 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5e-05
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTllDAiq 43
                  +++++  + + l+G++G GKSTll  + 
  CTQ28292.1 22 SLSFTLKKGDRIGLIGHNGCGKSTLLQVLD 51
                55666775558889***********96555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.1
      AAA_29  37 TllDAiq 43 
                 TllDA++
  CTQ28292.1 183 TLLDAVT 189
                 9****97 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00064
      AAA_29  16 tieidlkgatlltGpsGsGKSTll 39 
                 +++++  + + ++G++G GKS+ll
  CTQ28292.1 317 VARLRSGDRVAIMGRNGGGKSSLL 340
                 5666655599************98 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   3.8e-05     0.026      28      44 ..      35      51 ..      25      57 .. 0.93
   2 !    6.8   0.0    0.0071       4.9      27      49 ..     327     349 ..     323     380 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.8e-05
      AAA_15 28 liGkNnsGKSsileald 44
                liG+N++GKS++l++ld
  CTQ28292.1 35 LIGHNGCGKSTLLQVLD 51
                8**************97 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0071
      AAA_15  27 vliGkNnsGKSsilealdlFlnn 49 
                  + G+N+ GKSs+l++l+   nn
  CTQ28292.1 327 AIMGRNGGGKSSLLRLLWQQMNN 349
                 688**************866655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2    0.0002      0.14       3      85 ..      33     146 ..      31     190 .. 0.59
   2 !    6.7   0.0    0.0087         6       2      24 ..     325     347 ..     324     356 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C..............CHHHHCCSCCCEE... CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvse..............vwavllelperlL... 84 
                 + l G +G+GK+tLlq l  ++a              l  r  ++  +a++ + ll ++l ++ a+ +e              +   ++e+++ +L   
  CTQ28292.1  33 IGLIGHNGCGKSTLLQVLDGTLAPTSGSVS--LAGQCLMARVEQHLPEALHTQSLLQAVLAPLPADAREaqrwlaerllaqmgFTPAVMEQQTATLsgg 129
                 5689************99888886663221..2222222222223333366666666666666666666555666666666655555555555555555 PP

                 ................E CS
       NACHT  85 ................l 85 
                                 l
  CTQ28292.1 130 qhtrlllaralirqpdL 146
                 55555555555555553 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0087
                 CEEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklalaw 24 
                  v++ G++G GK+ Ll+ l +++
  CTQ28292.1 325 RVAIMGRNGGGKSSLLRLLWQQM 347
                 689*************9888766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   0.00034      0.23      10     128 ..      35     178 ..      28     185 .. 0.72
   2 ?    6.4   0.0     0.014       9.9       8      33 ..     326     351 ..     320     464 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00034
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee.......................erpevv.fvtlpsstsskdllrellralglelka....erlsseell. 79 
                 ++G+ G+GK+tll+ l  +l       +                       +  +++  v +p + + ++  r+l++ l  +        ++++  l  
  CTQ28292.1  35 LIGHNGCGKSTLLQVLDGTLAP-----TsgsvslagqclmarveqhlpealHTQSLLqAVLAPLPADAREAQRWLAERLLAQMGFtpavMEQQTATLSg 128
                 79**************999932.....234577877777777776666665555555566666666666666666666655444489997777777777 PP

      AAA_22  80 ealeqalrarav...ielliiDEaqh.lrseealeeLrsllnlsrkgvqliLv 128
                  + ++ l ara    + ll++DE  + l     l +L s+l   + + +++Lv
  CTQ28292.1 129 GQHTRLLLARALirqPDLLLLDEPGNhL-DLPTLLWLESFLQ--TWQGSFVLV 178
                 88888888888888889******88879.8888888888888..777777776 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.014
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeea 33 
                 ++++G  G GK+ llr l +q ++++
  CTQ28292.1 326 VAIMGRNGGGKSSLLRLLWQQMNNAS 351
                 589**************999986554 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.3   0.00029       0.2      23      39 ..      34      50 ..      15      59 .. 0.81
   2 ?   -0.0   0.3       1.5   1.1e+03     154     194 ..     224     274 ..     183     276 .. 0.60
   3 !    7.7   0.0    0.0065       4.5      23      38 ..     327     342 ..     323     345 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00029
      AAA_23 23 lItGpNGaGKTTildAi 39
                 ++G+NG+GK+T+l+ +
  CTQ28292.1 34 GLIGHNGCGKSTLLQVL 50
                578***********866 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.5
      AAA_23 154 rleelekeleeledekkllekl..........eqekekekeleeleeelee 194
                 r ++ +ke++  ++ ++ l ++           ++k+ ek+   l++e++e
  CTQ28292.1 224 RHKAEQKEIDRVSASARRLATWgrvydnedlaRKAKQMEKQVARLKDEQTE 274
                 223334444444444444444466666666665666666666666666655 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0065
      AAA_23  23 lItGpNGaGKTTildA 38 
                 +I G NG GK+++l+ 
  CTQ28292.1 327 AIMGRNGGGKSSLLRL 342
                 799**********975 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.071        49      26      50 ..     119     140 ..      95     161 .. 0.68
   2 !   10.2   0.3     0.001      0.69      25      88 ..     407     457 ..     393     459 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.071
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaal 50 
                 ++++++tlSGG++   + l la al
  CTQ28292.1 119 MEQQTATLSGGQH---TRLLLARAL 140
                 78999*******9...555555443 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.001
     SbcCD_C  25 elsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                 ++s++++tlSGGe++ l+ + l +a             +++l++LDE  + lD e  a+l ++l
  CTQ28292.1 407 RHSQKVSTLSGGERSRLLFVGLSLA-------------RYSLLLLDEPTNHLDMEGKAALAQTL 457
                 5789999*******66666655533.............45677777777777777776666665 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.6     7e-06    0.0048      19      72 ..     211     270 ..     194     278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7e-06
  ABC_tran_Xtn  19 leekeerleqqqkayekqqkeikkleefIerfraka......kkakqaqsrekaLeklek 72 
                    +  +e+ e ++ +++++qkei++  +  +r++ ++        a++a+++ek+  +l++
    CTQ28292.1 211 RQALQEQDESAALRHKAEQKEIDRVSASARRLATWGrvydneDLARKAKQMEKQVARLKD 270
                   566678889999999******************************************954 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00055      0.38       9      34 ..      25      50 ..      22      81 .. 0.91
   2 ?    4.7   0.0      0.03        21      12      40 ..     321     349 ..     316     353 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00055
                 S-EBTT-EEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  9 fpivqGqrtlipgafgvGktvisqsl 34
                 f++ +G r++++g +g+Gk++++q l
   CTQ28292.1 25 FTLKKGDRIGLIGHNGCGKSTLLQVL 50
                 8999******************9876 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.03
                  BTT-EEEEEESTTSSHHHHHHHHHHHSST CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  12 vqGqrtlipgafgvGktvisqslskqsns 40 
                    G r++i+g +g Gk+ +++ l +q+n+
   CTQ28292.1 321 RSGDRVAIMGRNGGGKSSLLRLLWQQMNN 349
                  579*****************999999876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.015        10       1      20 [.      32      51 ..      32     108 .. 0.86
   2 ?   -1.8   0.2       4.7   3.2e+03      58      78 ..     212     235 ..     194     270 .. 0.53
   3 !    7.4   0.0    0.0068       4.7       1      40 [.     325     372 ..     325     392 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.015
      AAA_28  1 kivitGgestGKTtlleaLa 20
                +i ++G  ++GK+tll+ L 
  CTQ28292.1 32 RIGLIGHNGCGKSTLLQVLD 51
                57799***********9886 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.7
      AAA_28  58 rvleeqleeeaaa...aankvlfc 78 
                 + l+eq e +a +   +++++  +
  CTQ28292.1 212 QALQEQDESAALRhkaEQKEIDRV 235
                 334444333333322122222222 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0068
      AAA_28   1 kivitGgestGKTtlleaLaar........gypvvpEaareileekla 40 
                 +++i+G  ++GK++ll+ L ++        g + +p+ +  ++++ la
  CTQ28292.1 325 RVAIMGRNGGGKSSLLRLLWQQmnnasplpGLRLHPRLHPGYYDQTLA 372
                 799***************997656566777777777777666666655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0079       5.4       3      23 ..      35      55 ..      33      74 .. 0.83
   2 ?    6.3   0.0     0.018        13       2      26 ..     327     351 ..     326     372 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0079
  RNA_helicase  3 lyGpsgeGKStlakeLakall 23
                  l G++g+GKStl + L  +l+
    CTQ28292.1 35 LIGHNGCGKSTLLQVLDGTLA 55
                  78***********99866665 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.018
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                    + G++g GKS+l + L +++ +++
    CTQ28292.1 327 AIMGRNGGGKSSLLRLLWQQMNNAS 351
                   689**************99998776 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0031       2.1      15      49 ..      21      57 ..      19      75 .. 0.84
   2 ?   -1.6   0.1       1.8   1.2e+03     107     162 ..     218     271 ..     189     277 .. 0.59
   3 ?    5.0   0.0     0.018        12      25      49 ..     326     350 ..     317     355 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0031
     DUF2813 15 nrLSlslee..ntvLiGENaWGKSSLldALslilnve 49
                n LS +l++     LiG N  GKS Ll+ L   l+++
  CTQ28292.1 21 NSLSFTLKKgdRIGLIGHNGCGKSTLLQVLDGTLAPT 57
                67888888622567***************99888776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.8
     DUF2813 107 leriyyrvsgelnedekvttersFldeegeklklddieelvkelislhPvlRlrda 162
                  e   +r ++e +e ++v+++   l + g+  + +d+++ +k++   + v Rl+d+
  CTQ28292.1 218 DESAALRHKAEQKEIDRVSASARRLATWGRVYDNEDLARKAKQME--KQVARLKDE 271
                 334445555556666666666666666666666666666655543..335555555 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.018
     DUF2813  25 tvLiGENaWGKSSLldALslilnve 49 
                  +++G N  GKSSLl+ L+  +n+ 
  CTQ28292.1 326 VAIMGRNGGGKSSLLRLLWQQMNNA 350
                 5789**************9988876 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00087       0.6       3      23 ..      32      52 ..      30      56 .. 0.90
   2 ?    2.0   0.0      0.24   1.6e+02       3      23 ..     325     345 ..     323     349 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00087
   PduV-EutP  3 killiGkvgsGKttLtqalkg 23
                +i liG+ g+GK tL q l+g
  CTQ28292.1 32 RIGLIGHNGCGKSTLLQVLDG 52
                7889**************997 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.24
   PduV-EutP   3 killiGkvgsGKttLtqalkg 23 
                 ++ ++G+ g GK +L + l +
  CTQ28292.1 325 RVAIMGRNGGGKSSLLRLLWQ 345
                 7899***********987755 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0044       3.1      30      58 ..      27      55 ..      23     126 .. 0.75
   2 ?   -3.4   0.1       8.7     6e+03      83      95 ..     251     263 ..     233     278 .. 0.51
   3 ?    3.0   0.0     0.097        67      30      65 ..     320     355 ..     306     366 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0044
      AAA_25 30 lpagelallaGapgtGKttlaldlalava 58
                l +g+ + l+G+ g+GK+tl+  l  ++a
  CTQ28292.1 27 LKKGDRIGLIGHNGCGKSTLLQVLDGTLA 55
                56788899************987766666 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.7
      AAA_25  83 edelrrRlravge 95 
                 +++l+r+++++ +
  CTQ28292.1 251 NEDLARKAKQMEK 263
                 2233333333333 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.097
      AAA_25  30 lpagelallaGapgtGKttlaldlalavatGkpwlg 65 
                 l+ g+ ++++G+ g GK+ l+  l   +   +p++g
  CTQ28292.1 320 LRSGDRVAIMGRNGGGKSSLLRLLWQQMNNASPLPG 355
                 5679999************99777777766666666 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.045        31      55      74 ..      32      51 ..      21      63 .. 0.82
   2 ?    7.3   0.1    0.0033       2.3      54      81 ..     324     351 ..     314     359 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.045
      DUF815 55 nvLLwGarGtGKSslvkall 74
                 + L+G+ G+GKS+l++ l 
  CTQ28292.1 32 RIGLIGHNGCGKSTLLQVLD 51
                56699**********98775 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0033
      DUF815  54 nnvLLwGarGtGKSslvkallneyaeeg 81 
                   v ++G  G GKSsl++ l +++++++
  CTQ28292.1 324 DRVAIMGRNGGGKSSLLRLLWQQMNNAS 351
                 567899****************999876 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.038        26      18      48 ..      28      58 ..      19     142 .. 0.65
   2 ?    6.4   0.0    0.0066       4.5      24      49 ..     327     399 ..     320     536 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.038
  KAP_NTPase 18 atpivvgLygkWGsGKssllnkledelkefa 48
                +++  +gL g  G+GKs+ll+ l   l   +
  CTQ28292.1 28 KKGDRIGLIGHNGCGKSTLLQVLDGTLAPTS 58
                556669999999********99877666555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0066
  KAP_NTPase  24 gLygkWGsGKssllnkledelkefa...............................................k 49 
                 ++ g  G GKssll +l +++++ +                                                
  CTQ28292.1 327 AIMGRNGGGKSSLLRLLWQQMNNASplpglrlhprlhpgyydqtlaqlpdeasllealtpfapsadtrkralI 399
                 56677799***************98777777666666666666666665555555555555555555555550 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.013       8.7      21      50 ..      35      64 ..      28      71 .. 0.87
   2 ?    2.6   0.3       0.1        69     115     177 ..     212     272 ..     176     277 .. 0.72
   3 ?    2.2   0.0      0.13        92      21      42 ..     328     349 ..     318     379 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.013
  Zeta_toxin 21 lgGqpGAGKselaellkdelerqgnvvrld 50
                l G  G+GKs+l++ l+  l+++++ v l 
  CTQ28292.1 35 LIGHNGCGKSTLLQVLDGTLAPTSGSVSLA 64
                56999**************99999888775 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.1
  Zeta_toxin 115 ealkkaGYevevvvvavkkelSrlgvldRyeeevaegRlvpkeehdeafeglresvealeeek 177
                 +al+++  +  ++  a +ke+ r ++ +R +++   gR+ + e   +  ++++++v++l+ e+
  CTQ28292.1 212 QALQEQDESAALRHKAEQKEIDRVSASARRLAT--WGRVYDNEDLARKAKQMEKQVARLKDEQ 272
                 555555555556666666666666666666665..48**********************9987 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.13
  Zeta_toxin  21 lgGqpGAGKselaellkdeler 42 
                 + G  G GKs+l++ll +++++
  CTQ28292.1 328 IMGRNGGGKSSLLRLLWQQMNN 349
                 66999***********999963 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.47   3.3e+02      25      43 ..      32      50 ..      29      58 .. 0.89
   2 ?    8.9   0.0    0.0021       1.4      25      49 ..     325     349 ..     323     358 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.47
       DUF87 25 HlAilgsTGsGKSntvavL 43
                +++ +g  G GKS++  vL
  CTQ28292.1 32 RIGLIGHNGCGKSTLLQVL 50
                5789999********9998 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0021
       DUF87  25 HlAilgsTGsGKSntvavLleelle 49 
                 ++Ai+g+ G GKS + ++L +++ +
  CTQ28292.1 325 RVAIMGRNGGGKSSLLRLLWQQMNN 349
                 69******************99985 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.016        11       1      18 [.      33      50 ..      33      80 .. 0.89
   2 ?    3.9   0.0      0.11        73       1      25 [.     326     355 ..     326     402 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.016
      AAA_18  1 IlltGtpGvGKttlakeL 18
                I+l G  G+GK+tl + L
  CTQ28292.1 33 IGLIGHNGCGKSTLLQVL 50
                899***********9998 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.11
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.....g 25 
                 ++++G  G GK++l + L + +++     g
  CTQ28292.1 326 VAIMGRNGGGKSSLLRLLWQQMNNasplpG 355
                 6899**************666544455552 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0012      0.82      25      53 ..      26      54 ..      11      63 .. 0.80
   2 ?   -0.0   0.0      0.51   3.6e+02      28      53 ..     322     347 ..     300     351 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0012
                G-S-SEEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB 25 kaGraqvvGltGvPGaGkstlvealglel 53
                +  +  ++Gl G  G Gkstl++ l  +l
  CTQ28292.1 26 TLKKGDRIGLIGHNGCGKSTLLQVLDGTL 54
                5567789***************9987666 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.51
                 -SEEEEEEE-TTSSHHHHHHHHHHHH CS
        MeaB  28 raqvvGltGvPGaGkstlvealglel 53 
                    +v + G  G Gks l+  l +++
  CTQ28292.1 322 SGDRVAIMGRNGGGKSSLLRLLWQQM 347
                 567999***********998877666 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0065       4.5      25      55 ..      33      63 ..      22      87 .. 0.83
   2 ?   -3.3   0.0         7   4.8e+03      25      42 ..     326     343 ..     323     349 .. 0.80
   3 ?    2.1   0.0      0.15     1e+02      69     116 ..     394     442 ..     371     460 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0065
  Mg_chelatase 25 lllvGppGsGKtmlakrlpsllpplseeeal 55
                  + l+G  G+GK+ l + l + l+p s + +l
    CTQ28292.1 33 IGLIGHNGCGKSTLLQVLDGTLAPTSGSVSL 63
                  6699******************998876555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                   + ++G  G GK+ l + l
    CTQ28292.1 326 VAIMGRNGGGKSSLLRLL 343
                   66899******9987765 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.15
  Mg_chelatase  69 eekllkrrpfraphhsaskaalvGggs.kpkpGeislahnGvLfLDElp 116
                   ++++l ++ f   +hs   ++l Gg + +     +sla+  +L+LDE +
    CTQ28292.1 394 RKRALIAAGFGWARHSQKVSTLSGGERsRLLFVGLSLARYSLLLLDEPT 442
                   55566667788899999999999997757778889************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 4056.77
//
Query:       CTQ28293.1  [L=317]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-13   49.2   0.1      9e-13   48.5   0.1    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.1e-11   44.7   0.0    2.9e-11   43.4   0.0    1.6  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    3.4e-11   42.9   1.9      1e-10   41.3   0.4    2.3  2  MarR_2           MarR family
    7.8e-11   42.3   0.0    2.1e-10   40.9   0.0    1.8  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    9.6e-09   35.6   0.1    2.2e-08   34.5   0.1    1.6  1  HTH_27           Winged helix DNA-binding domain
    1.3e-07   31.4   0.0    2.6e-07   30.4   0.0    1.6  1  MarR             MarR family
    0.00021   21.0   4.2    0.00067   19.4   0.7    2.7  2  HTH_IclR         IclR helix-turn-helix domain
     0.0053   16.9   0.0      0.009   16.2   0.0    1.3  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
     0.0077   16.2   0.0       0.03   14.3   0.0    2.0  1  FR47             FR47-like protein
  ------ inclusion threshold ------
      0.015   15.2   0.1      0.029   14.3   0.1    1.4  1  TrmB             Sugar-specific transcriptional regulator Trm
      0.027   14.6   0.0        1.4    9.0   0.0    2.8  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
       0.04   14.1   0.2      0.085   13.1   0.2    1.6  1  Fe_dep_repress   Iron dependent repressor, N-terminal DNA bin
      0.056   13.3   0.2       0.17   11.8   0.1    1.8  1  HTH_5            Bacterial regulatory protein, arsR family
      0.083   13.2   0.0       0.53   10.6   0.0    2.3  2  KORA             TrfB plasmid transcriptional repressor
       0.11   12.7   0.0        1.1    9.4   0.0    2.4  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.1   7.5e-16     9e-13      19     117 .]     193     290 ..     176     290 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 7.5e-16
                     HHHHHHHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHH CS
  Acetyltransf_1  19 aseeefeesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYe 113
                     + ++ef+ ++s +a+ +++a ++g+++G + +   +   +++a+++ +  + ++rg G+G++Ll +++ ++ ++++ ++ l++++  daa++lYe
      CTQ28293.1 193 SGVAEFATRLSSPANQIWLAIREGKIVGSLAIDGEDL-GQQEAHLRWFILDDSCRGTGIGRRLLSEAMAFCDSRQFSAVQLWTFKGLDAARKLYE 286
                     33444666677799****************9999999.99******************************************************9 PP

                     HTTE CS
  Acetyltransf_1 114 klGF 117
                      +GF
      CTQ28293.1 287 SFGF 290
                     9**9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   2.4e-14   2.9e-11      20     117 ..     196     301 ..     180     306 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 2.4e-14
  Acetyltransf_10  20 ealrerieegealllvaeeggkivGvielrdgs......hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklG 105
                      ++++ r++++++++++a ++gkivG ++++ ++      h+  ++ d+++rg+Gig++Ll ++ + ++ ++ +  +l   +   +a+++Ye++G
       CTQ28293.1 196 AEFATRLSSPANQIWLAIREGKIVGSLAIDGEDlgqqeaHLRWFILDDSCRGTGIGRRLLSEAMAFCDSRQFSAvQLWTFKGLdAARKLYESFG 289
                      5678888999*****************885555578888****************************99999988665555555********** PP

  Acetyltransf_10 106 FkavgeeqeenG 117
                      F+ + e q e++
       CTQ28293.1 290 FTLIREWQGEQW 301
                      **9988887776 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.4   8.5e-14     1e-10       5      62 .]      35      90 ..      29      90 .. 0.95
   2 ?    0.2   0.1      0.61   7.3e+02       6      41 ..     135     169 ..     132     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 8.5e-14
                HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  5 paqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                p+  + L+++  r++  +t+++l+  lgl+ks+vsr++ rL aaG +e+rp+ eD+Ra
  CTQ28293.1 35 PSAVHTLLEVSMRGE--MTAAQLVTLLGLEKSSVSRMVSRLLAAGELEERPCAEDARA 90
                778889********9..****************************************7 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.61
                 HHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHH CS
      MarR_2   6 aqarvLaaLgrrpgrdltvgelarrlglsksavsri 41 
                 a ar+La  +++   d t+ ++   +g+ ++ + ri
  CTQ28293.1 135 AYARALAQCRDSALAD-TAPQISLMTGYQPGMIGRI 169
                 6789999999999876.*****99999988877776 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   1.7e-13   2.1e-10       2      75 ..     206     291 ..     205     292 .. 0.74

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 1.7e-13
                     TEEEEEEEETTEEEEEEEEEEES.....TCTEEEEE-GGGTTSSHHHHHHH.H......TTSEEEEE.EEEE.THH..HHHHHHHHTTEE CS
  Acetyltransf_7   2 kgevfVaeddgkivGfialslld.....aeitrlaVdpeyrgkGiGraLle.a......aekgiile.qlel.nae..kaikfYeklGFe 75 
                      +++++a ++gkivG +a+  +d     a++ ++  d ++rg GiGr+Ll  a      +  ++    ql++ +    +a+k+Ye++GF+
      CTQ28293.1 206 ANQIWLAIREGKIVGSLAIDGEDlgqqeAHLRWFILDDSCRGTGIGRRLLSeAmafcdsR--QFS-AvQLWTfK-GldAARKLYESFGFT 291
                     5789***********99999999*998777777*****************8333333221..211.23444431.1346999*******6 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.1   1.8e-11   2.2e-08       7      68 .]      39      99 ..      34      99 .. 0.93

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.8e-11
      HTH_27  7 lvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68
                 +L  +  +r+++++a+l+  l +e+s++s ++++L ++G +e+ ++++d r+k ++lT+kG
  CTQ28293.1 39 HTLLEVS-MRGEMTAAQLVTLLGLEKSSVSRMVSRLLAAGELEERPCAEDARAKSLALTAKG 99
                5666777.9****************************************************9 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   2.2e-10   2.6e-07       2      58 ..      34      90 ..      33      91 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2.2e-10
                -HHHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR  2 tltqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58
                +++ +++L  ++ +g+++ ++L   lg++ks+v+r++ rL  +G +e +++ eD R+
  CTQ28293.1 34 SPSAVHTLLEVSMRGEMTAAQLVTLLGLEKSSVSRMVSRLLAAGELEERPCAEDARA 90
                567899**************************************************7 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.18   2.2e+02      26      40 ..      29      43 ..      28      44 .. 0.88
   2 !   19.4   0.7   5.6e-07   0.00067      16      50 ..      47      81 ..      45      83 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.18
                HHHTS-HHHHHHHHH CS
    HTH_IclR 26 rrtglpkStvhRlLq 40
                ++t+ ++S+vh lL 
  CTQ28293.1 29 AATHYSPSAVHTLLE 43
                5799********996 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 5.6e-07
                BSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR 16 pqeltlselArrtglpkStvhRlLqtLvelGyveq 50
                ++e+t ++l   +gl kS+v+R+++ L   G +e 
  CTQ28293.1 47 RGEMTAAQLVTLLGLEKSSVSRMVSRLLAAGELEE 81
                789************************99987775 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.5e-06     0.009      27     139 ..     187     295 ..     168     300 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.5e-06
  Acetyltransf_4  27 feyev.ssveefekflealdsekeyvflvaesdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeias 120
                     fe +v s v ef+++l++   + + ++l++ +++ivG +++ + +  ++++ a l  ++ +  ++ +g+gr l+   + +     +      +++
      CTQ28293.1 187 FEGKVaSGVAEFATRLSS---PANQIWLAIREGKIVGSLAIDGEDL-GQQE-AHLRWFILDDSCRGTGIGRRLLSEAMAFCDSRQFSAVQLWTFK 276
                     4444448899******99...78889999999**********9888.5555.55555555679******************9999********** PP

  Acetyltransf_4 121 pnensiqfhkalGFelvgi 139
                       +++ ++++++GF+l ++
      CTQ28293.1 277 GLDAARKLYESFGFTLIRE 295
                     ***************9987 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.5e-05      0.03      22      82 ..     234     295 ..     220     300 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.5e-05
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHH.S-S-EEEEEETT-HHHHHHHHHHT-EEEEE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiae.rgktvllvvvasNtpsirlyeklGfekiee 82 
                   l    ++++ r+ G g+rl ++  +     +   v l++  + +++++lye+ Gf++i+e
  CTQ28293.1 234 AHLRWFILDDSCRGTGIGRRLLSEAMAFCDSrQFSAVQLWTFKGLDAARKLYESFGFTLIRE 295
                 55666778999********99877666666626677788888999*************9943 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   2.4e-05     0.029      19      53 ..      46      80 ..      36      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-05
                HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEE CS
        TrmB 19 klgpatadeiaeelgvprskvYevLrsLedkGlVe 53
                ++g++ta ++   lg+++s+v +++++L+ +G  e
  CTQ28293.1 46 MRGEMTAAQLVTLLGLEKSSVSRMVSRLLAAGELE 80
                79****************************99666 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.31   3.7e+02      41      58 ..     206     223 ..     194     225 .. 0.82
   2 ?    9.0   0.0    0.0011       1.4      84     127 ..     244     292 ..     234     293 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.31
                     TSEEEEEEETTEEEEEEE CS
  Acetyltransf_9  41 esrvlgaedngelvgqla 58 
                      +++++a ++g++vg+la
      CTQ28293.1 206 ANQIWLAIREGKIVGSLA 223
                     4799***********987 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
                     CGTTS-HHHHHHHHHHHHHHHTT--EEEE--.....SSHHHHHTTT-EE CS
  Acetyltransf_9  84 ehrgrgvlskLlaraleemreegqplsllfP.....ssipiYrrfGyei 127
                       rg g+ ++Ll +a++ +++++ + + l+      +++++Y++fG+  
      CTQ28293.1 244 SCRGTGIGRRLLSEAMAFCDSRQFSAVQLWTfkgldAARKLYESFGFTL 292
                     579****************************77777777*******976 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   7.1e-05     0.085      20      50 ..      47      77 ..      36      83 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.1e-05
                    HSSB-HHHHHHHHTS-HHHHHHHHHHHHHTT CS
  Fe_dep_repress 20 kkvvktkdlaerLnvspssVsemlkkLekdG 50
                    ++  + ++l   L+ ++ssVs m+++L  +G
      CTQ28293.1 47 RGEMTAAQLVTLLGLEKSSVSRMVSRLLAAG 77
                    556677899999***************8877 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00014      0.17      13      43 ..      47      77 ..      38      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
                TSSEEHHHHHHHHTS-HHHHHHHHHHHHHTT CS
       HTH_5 13 egelcvcelaeelglsqstvShHLkkLreaG 43
                +ge+++ +l+  lgl +s vS+  ++L  aG
  CTQ28293.1 47 RGEMTAAQLVTLLGLEKSSVSRMVSRLLAAG 77
                59*******************9888887776 PP

>> KORA  TrfB plasmid transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00044      0.53      34      62 ..      52      80 ..      42      87 .. 0.86
   2 ?   -1.6   0.0       2.9   3.5e+03      30      50 ..     122     142 ..     108     152 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00044
        KORA 34 qadvatelgltkqavsqavkrvwaahaer 62
                 a+++t lgl k  vs++v r +aa +  
  CTQ28293.1 52 AAQLVTLLGLEKSSVSRMVSRLLAAGELE 80
                5899*******************986654 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.9
        KORA  30 egkkqadvatelgltkqavsq 50 
                 ++ +q+ vat l+   +a  q
  CTQ28293.1 122 DETQQQTVATGLAAYARALAQ 142
                 456677777777766555555 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.76   9.1e+02      27      47 ..      37      57 ..      21      59 .. 0.88
   2 ?    9.4   0.0   0.00095       1.1      29      59 ..     238     268 ..     209     275 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.76
  Acetyltransf_CG 27 fthTeVpeelrGkGiAkkLvk 47
                       hT  + ++rG+  A++Lv+
       CTQ28293.1 37 AVHTLLEVSMRGEMTAAQLVT 57
                     579999************996 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00095
  Acetyltransf_CG  29 hTeVpeelrGkGiAkkLvkaalddareeglk 59 
                        + +++ rG Gi+++L  +a+ +  +++++
       CTQ28293.1 238 WFILDDSCRGTGIGRRLLSEAMAFCDSRQFS 268
                      5567899***************998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2432.19
//
Query:       CTQ28294.1  [L=199]
Description: Inorganic pyrophosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-45  154.9   0.0    1.7e-45  154.7   0.0    1.0  1  Pyrophosphatase  Inorganic pyrophosphatase


Domain annotation for each model (and alignments):
>> Pyrophosphatase  Inorganic pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.7   0.0   9.4e-50   1.7e-45       1     160 []      38     194 ..      38     194 .. 0.98

  Alignments for each domain:
  == domain 1  score: 154.7 bits;  conditional E-value: 9.4e-50
                      EEEEE-TTCSEEEEEETTTTEEEEEEE-SSSB-BSSEEEEETT--BTCCBEETSSSEEEEEESSS---TTEEEEEEEEEEEEEEETTEEEEEEE CS
  Pyrophosphatase   1 vvvEiprgsnaKyeidkeegklrldrvlftskgypanYGfipqTledtelkGDgDPlDvlvlgeeplspgevvevkvlGvlamiDegetDdKii 94 
                      +v Eip g  +Kye+d ++g ++ dr++   + ypanYG + q l+      DgDPlDv+ ++++p++pg++++ + +Gvl+m+D ge+DdKii
       CTQ28294.1  38 AVTEIPTGGIVKYETDAKTGFIVADRFQSMPVAYPANYGSLTQSLAG-----DGDPLDVVFYTRAPMAPGTLIKLRAIGVLKMVDGGEKDDKII 126
                      589*******************************************9.....****************************************** PP

                      EEETT..SGGGTT-SSGGGSTHHHHHHHHHHHHHTTTTSCCT-SEEEEEEEEHHHHHHHHHHHHHHHH CS
  Pyrophosphatase  95 avpvk..dprlkkindiedlpgllleeiehfFetykdlegkkknvkveewkdkeeAekvieeaheryk 160
                      avp++  dp++++i++i+dlp+   +++e fF+ yk+l + +k+v++ +++d+++A+++i++a e++k
       CTQ28294.1 127 AVPASkiDPTYDDIKTISDLPKIEQQRLEAFFRVYKELPEGRKKVELAGFNDAAAAKQEIKSAWEAWK 194
                      *****9********************************9777799********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1493.16
//
Query:       CTQ28295.1  [L=336]
Description: alcohol dehydrogenase, 1-propanol preferring [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-29  102.2   7.0    1.3e-29  102.2   7.0    1.8  2  ADH_N            Alcohol dehydrogenase GroES-like domain
    1.9e-25   89.3   2.1    3.5e-25   88.5   2.1    1.4  1  ADH_zinc_N       Zinc-binding dehydrogenase
    3.6e-10   41.0   0.8    5.7e-10   40.4   0.8    1.3  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.017   15.8   1.1      0.044   14.5   1.1    1.7  1  CoA_binding      CoA binding domain
      0.024   15.3   0.2      0.052   14.2   0.2    1.5  1  Methyltransf_25  Methyltransferase domain
        0.1   12.0   0.1        0.2   11.0   0.1    1.5  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   7.0   4.4e-33   1.3e-29       2     109 .]      25     131 ..      24     131 .. 0.97
   2 ?   -2.3   0.1       1.3     4e+03      46      61 ..     242     257 ..     211     261 .. 0.75

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 4.4e-33
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvsldGgfaeyv 99 
                 ge+l+k++++g+C++Dlh+ +g  ++  k+++ilGHE +G+v++vgp+v++lk Gdr  v ++++ cg+C++C++g+e+lC++ k  g+++dGg+ae +
  CTQ28295.1  25 GEALLKMECCGVCHTDLHVKNG--DFGDKTGVILGHEGIGVVQKVGPGVTSLKPGDRASVAWFFEgCGHCDYCNSGNETLCRSVKNAGYTVDGGMAEEC 121
                 689******************9..7************************************99999********************************* PP

                 EECGGGEEEE CS
       ADH_N 100 vvpekklvkl 109
                 +v ++++vk+
  CTQ28295.1 122 IVTANYAVKV 131
                 ***9999986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.3
                 ESTT-CS--TT-EEEE CS
       ADH_N  46 vgpevkklkvGdrVvv 61 
                 ++++v+ ++ G rVv+
  CTQ28295.1 242 FNSAVDAVRAGGRVVA 257
                 4566777888888775 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   2.1   1.2e-28   3.5e-25       1     129 [.     172     298 ..     172     299 .. 0.92

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 1.2e-28
                 HHHHHHHHHHH.HTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAk.alGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeefd 98 
                 g+G +a+q+Ak  ++a+via+d+++ +lela+++Gad +in++++d  + i+e tg  g+++++ ++ ++a++++a+++++ gGr+v vG++ +  ++d
  CTQ28295.1 172 GLGNLALQYAKnVFNAKVIAIDVNDGQLELAASMGADLTINSRNEDAAKVIQEKTG--GAHAAVVTAVAKAAFNSAVDAVRAGGRVVAVGLPPEAMSLD 268
                 89*********99*****************************555**********5..55555555444**********************999999** PP

                 HHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  99 lrnlllkeksilGsllgslreefkealdlla 129
                 + +l+l  + ++Gsl+g+ r+++ ea++++a
  CTQ28295.1 269 IPRLVLDGIEVVGSLVGT-RQDLVEAFQFAA 298
                 ******************.*******99976 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.8   1.9e-13   5.7e-10       1     133 []     205     332 ..     205     332 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.9e-13
                   TT-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileel 93 
                   +GAd  i++r+ed++    ++t g++  +v+ +v+++a+   ++++++ gGr+v +g pp +  l  p++   g  v  +++     + ++d l e 
    CTQ28295.1 205 MGADLTINSRNEDAAkviqEKT-GGAHAAVVTAVAKAAF-NSAVDAVRAGGRVVAVGLPPEAMSLDIPRLVLDGIEVVGSLVG----T-RQD-LVEA 293
                   59********999998997666.5569999999999999.8888999677*******88855555555554444444444444....3.788.**** PP

                   HHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  94 aalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   +++ +eGk+ p v+   ple+++  ++ +e+g+ rG++V+
    CTQ28295.1 294 FQFAAEGKVVPKVT-LRPLEDINAIFKEMEQGQIRGRMVI 332
                   *************8.68*********************97 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.1   1.5e-05     0.044       6      92 ..     165     258 ..     163     261 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
                  EEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEET...TEEEESCHHHHHHHC..T...TTEEEEES-HHHHHHHHHHHHHTT-SEEEE CS
  CoA_binding   6 viviGagglgiaglyhfkeklkygikavfgvnprkvgtevl...glpvyksvdeleekt..e...vdvavitvPaesaqeavdelveagikgivi 92 
                  ++++G gglg   l   k+  +   +++++vn++++    +   +l++    +++ + +  +   + +av+t+ a++a ++++++v+ag +++++
   CTQ28295.1 165 IAIYGLGGLGNLALQYAKNVFN-AKVIAIDVNDGQLELAASmgaDLTINSRNEDAAKVIqeKtggAHAAVVTAVAKAAFNSAVDAVRAGGRVVAV 258
                  799******6555555555544.556999**9997665555668999998887777777642457************************998875 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   1.8e-05     0.052       7      70 ..     172     234 ..     169     258 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
                      TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSSSTTTEEEEEE CS
  Methyltransf_25   7 GtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaed.lpfedgsfDlvvs 70 
                      G G+l+l+ ak++ +akv+++D+++++le a++  +  +l ++ ++ da + ++++ g  ++ v+
       CTQ28295.1 172 GLGNLALQYAKNVFNAKVIAIDVNDGQLELAASMGA--DLTINSRNEDAAKvIQEKTGGAHAAVV 234
                      789*********856*****************9994..578999999997734555555555444 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   6.8e-05       0.2      36      73 ..     162     200 ..     146     223 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.8e-05
                   TSEEEEES-SHHHHHHHHHHH.HTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlk.afgmkviaydrskkkee 73 
                   g+ ++i GlG +G+ + +++k  f++kvia+d++  + e
    CTQ28295.1 162 GQWIAIYGLGGLGNLALQYAKnVFNAKVIAIDVNDGQLE 200
                   67799****************99*********9876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2465.25
//
Query:       CTQ28296.1  [L=540]
Description: ABC-type dipeptide transport system, periplasmic component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-70  238.2   2.1    1.8e-70  237.8   2.1    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.8   2.1   9.9e-75   1.8e-70       1     366 [.      74     443 ..      74     451 .. 0.90

  Alignments for each domain:
  == domain 1  score: 237.8 bits;  conditional E-value: 9.9e-75
                 SEEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTTTTTHCHHHHHH CS
   SBP_bac_5   1 evvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnalfltllaavpas 99 
                 e++p++Aes w+ ++D+++ytf+LRkgv+FsDGtpl A++v+ +f+ +   d a++   +  + ++ ++ e++d++tv+f+++kp + fl+ +a + + 
  CTQ28296.1  74 EIEPWIAES-WTSNADKTEYTFHLRKGVTFSDGTPLDAAAVAKNFDTYGLGDKAHRLPVSE-VINNYQRSEVIDPLTVKFYFNKPSPGFLQGTATIGSG 170
                 689******.7************************************99999998876555.599********************************** PP

                 HGCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTS.T......TTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCTHCHHHH CS
   SBP_bac_5 100 iakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdY.w......gggkpkldriefkvipdsdaraaalqsGeiddvaepppsdieqlke 191
                 +++ ++ + + ++   +++ +g+GP+++++ kpg++++l++++dY w      ++g+++ld i++ v p++++r+ al++G++ ++ ++++ d +q  +
  CTQ28296.1 171 LVSLSTLQRNFEELGDARHIIGSGPFVVQDEKPGRELTLVARKDYqWgpkniaQQGPANLDGITYIVTPEDSVRIGALLAGQAGFIRQVQAYDEKQATD 269
                 **977777777788899****************************99*****999****************************9999999988888655 PP

                 HTTEEEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHHHTT-BCSSTS CS
   SBP_bac_5 192 akglkvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLkeaGykdgdgg 290
                 +  + + +  ++g    l+f  ++p  +d rvRqAl +A +  ++v++++   + +a+s+l++s +g+ +  ++   ++d +kA++lL++aG+k   +g
  CTQ28296.1 270 QGFKIY-AAPTRGVNDSLSFRPDNPLVADLRVRQALLHATNARQVVETLFSANYPQATSVLASSAAGYVNLSDKL--TFDQAKARQLLDDAGWKPAADG 365
                 555555.788899999****************************************************9998886..89*****************988 PP

                 CEETC..EEEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHH CS
   SBP_bac_5 291 glrek..klkltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnfl 366
                  ++++  +l lt++ +  +p +k++++li+qq++++G+ ++vk+ d+ +  l+  + ++ ++ ++  g   pd   ++
  CTQ28296.1 366 IRSKDgqRLALTVYESLPQPQNKEVLQLIAQQWRQVGVALTVKAGDAGSRTLDNLDPQKTPLTVSEVGRADPDVVKSM 443
                 88888777777777777799999**********************886777777778888888887777766665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4077.10
//
Query:       CTQ28297.1  [L=314]
Description: putative dipeptide transport protein (ABC superfamily, membrane) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-27   94.6  16.2    5.7e-27   94.6  16.2    2.1  2  BPD_transp_1   Binding-protein-dependent transport system inn
  ------ inclusion threshold ------
       0.15   11.3   1.8        0.3   10.3   1.8    1.4  1  Peptidase_M50  Peptidase family M50


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.9      0.12   1.1e+03      28      39 ..     104     115 ..      14     125 .. 0.70
   2 !   94.6  16.2   6.4e-31   5.7e-27      11     183 ..     126     306 ..     112     308 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.12
  BPD_transp_1  28 lslPsfvlaill 39 
                   l+lP f+la+ l
    CTQ28297.1 104 LALPAFLLAVAL 115
                   223333322222 PP

  == domain 2  score: 94.6 bits;  conditional E-value: 6.4e-31
  BPD_transp_1  11 nrnkkldkllrpliivllslPsfvlaillvlvf.........vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqif 98 
                      ++l+++l+ l  ++ slP+f+l+i l+ +f         ++ + l  lilpvi+++l  +ap++ +++r++ ++  + +v +ara+G+s+  ++
    CTQ28297.1 126 PGLRWLSNFLQSLPVLFISLPTFWLGIALIQLFsfqlrwipvINPGPLEGLILPVIAVALPISAPLAQILMRSMDQVAVQPFVAVARAKGMSETGVL 222
                   4459**************************999********999999************************************************** PP

  BPD_transp_1  99 rkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   +++v+ nal p++  ++l +g l+ ga+++e++++ +Glg+l+ +a +++d++  + ++v + ++ ++l+nl++d+++  ldpr+
    CTQ28297.1 223 WRHVMGNALLPALNIAGLLLGELIAGALITETVFGRSGLGQLTQQAVNNQDIAVLQ-AVVMISALGFVLINLLVDLVMPRLDPRL 306
                   ********************************************************.***************************8 PP

>> Peptidase_M50  Peptidase family M50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.8   3.3e-05       0.3      92     208 ..     169     294 ..     161     295 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.3e-05
                    XXXXXXXXXXXXXXXXX-EEECE...CTTTSCEE-SEEEC-.......XXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxx RF
  Peptidase_M50  92 lAGplanfilailvfvvpkkske...seeekrgviGvspkp.......vkkegllealkegvektlkvvvltvk........algklitgklslkt 169
                      Gpl ++il+++++++p + +    + +++   + v+p +       ++++g+       +++++  +              lg+li g l  +t
     CTQ28297.1 169 NPGPLEGLILPVIAVALPIS-APlaqILMRSMDQVAVQPFVavarakgMSETGV------LWRHVMGNAL---LpalniaglLLGELIAGALITET 254
                    56889999999999988622.223446666666666666652211112111111......1222222222...123345555899*********** PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  Peptidase_M50 170 lggpisiaqlaseaaeaglssflqllalisvn.LgilNLl 208
                    + g  +++ql+++a++++ +++lq +++is   + ++NLl
     CTQ28297.1 255 VFGRSGLGQLTQQAVNNQDIAVLQAVVMISALgFVLINLL 294
                    *****************************96425567886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2327.37
//
Query:       CTQ28298.1  [L=282]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-22   80.5  15.2    1.2e-22   80.5  15.2    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne
    0.00041   19.5   2.5    0.00079   18.6   2.5    1.5  1  XK-related    XK-related protein
  ------ inclusion threshold ------
       0.73   10.1   2.9        1.9    8.8   2.9    1.7  1  MscL          Large-conductance mechanosensitive channel, Msc


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3      0.14   8.5e+02      51      71 ..      26      46 ..      21      65 .. 0.70
   2 !   80.5  15.2     2e-26   1.2e-22       1     175 [.     103     273 ..     103     276 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.14
  BPD_transp_1 51 hlilpviillllsaapyvrli 71
                  +l+++v+i++ll+a+++  ++
    CTQ28298.1 26 WLAWAVMIAALLMAIAPQWFT 46
                  667777777777777665555 PP

  == domain 2  score: 80.5 bits;  conditional E-value: 2e-26
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g+ lG la+ +  +++   +++l++vll++Ps++l + ++        lg++    ++++++  +a ++rl r++++r++ +d+veaar  G + + 
    CTQ28298.1 103 GTALGTLAG-ALAGRVESTIMRLVDVLLAIPSLLLQLTVI------ILLGFGTVNaAVAVGVAAIASFARLARAEVVRVRHSDYVEAARGSGGTFFA 192
                   678999999.9999********************777777......5577666666999999*********************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis......nggvlalviavlllnlvadil 175
                   +f++++lPn+l+ +++++ l+fg ++ + + l+flg     gt+   +++g  ++e+       ++++ + ++av++++l+a+ l
    CTQ28298.1 193 VFWRHILPNSLTAVLAFATLQFGQAMLALATLSFLG----YGTPPPVPEWGLLIAEGRnylstaWWLTTFPGLAVVAVVLAANRL 273
                   ************************************....888888888888888888888888999999999999999988877 PP

>> XK-related  XK-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   2.5   1.3e-07   0.00079     126     240 ..     120     238 ..     112     271 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.3e-07
  XK-related 126 smlrlleaflesaPqlvLqlyillqtg..seevsvlqavsavlSlvslawalvsyqkslrlsrpdkkklsllavilqflWrlltiasRvlalalfasvf 222
                 +++rl++ +l ++P l+Lql++++  g  + + +v  +v+a++S+  la a v      r s   +   +  ++++ ++Wr ++  s +++la+ +  f
  CTQ28298.1 120 TIMRLVDVLL-AIPSLLLQLTVIILLGfgTVNAAVAVGVAAIASFARLARAEVVRV---RHSDYVEAARGSGGTFFAVFWRHILPNSLTAVLAFATLQF 214
                 6778887655.8***********999955555556777888888888888777533...3344455555899*************************** PP

  XK-related 223 klwvllvlllhwlvmtl......W 240
                  + +l++  l +l   +      W
  CTQ28298.1 215 GQAMLALATLSFLGYGTpppvpeW 238
                 *****9999999877666666662 PP

>> MscL  Large-conductance mechanosensitive channel, MscL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.9   0.00032       1.9      14      49 ..      93     131 ..      89     178 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00032
        MscL  14 vidLAvgviiGaaftkiVtslv...kdiimpliglllgg 49 
                 +i +A+g+++G+a++++  +l    ++ im l+++ll  
  CTQ28298.1  93 LIAVAIGLVVGTALGTLAGALAgrvESTIMRLVDVLLAI 131
                 6899**************999633377899999988832 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2111.11
//
Query:       CTQ28299.1  [L=538]
Description: putative peptide transport fused subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-63  213.3   0.1    3.3e-31  108.6   0.0    2.3  2  ABC_tran         ABC transporter
    9.9e-17   61.7  13.0    2.6e-08   34.0   0.6    4.1  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    2.5e-12   47.2   2.7    2.1e-05   24.8   0.2    3.5  2  AAA_22           AAA domain
    1.5e-11   44.2   0.8    7.8e-05   22.2   0.0    3.0  2  SMC_N            RecF/RecN/SMC N terminal domain
    3.3e-10   40.6  11.1      3e-06   27.7   4.1    3.0  2  AAA_16           AAA ATPase domain
    5.1e-10   39.7   0.1     0.0019   18.7   0.0    2.5  2  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
    1.7e-08   34.1   0.2     0.0033   17.1   0.0    2.4  2  AAA_29           P-loop containing region of AAA domain
    1.1e-06   28.6   0.1     0.0085   16.0   0.0    2.6  2  RsgA_GTPase      RsgA GTPase
    1.5e-06   28.7   0.4       0.75   10.2   0.1    3.8  3  AAA              ATPase family associated with various cellul
    1.4e-05   25.7   0.0      0.039   14.5   0.0    2.5  2  AAA_23           AAA domain
    1.9e-05   24.5   0.0       0.11   12.1   0.0    3.0  3  AAA_15           AAA ATPase domain
    2.8e-05   24.1   1.1        1.2    9.1   0.0    3.5  3  AAA_5            AAA domain (dynein-related subfamily)
    4.5e-05   23.2   4.2        1.1    8.9   0.0    4.2  4  Sigma54_activat  Sigma-54 interaction domain
    5.8e-05   22.9   0.0      0.069   12.9   0.0    2.3  2  PRK              Phosphoribulokinase / Uridine kinase family
    5.9e-05   23.0   5.9      0.069   13.1   0.0    3.3  3  NACHT            NACHT domain
    6.3e-05   22.5   0.0       0.13   11.6   0.0    3.2  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00013   21.6   3.5       0.67    9.5   1.7    4.2  3  AAA_25           AAA domain
    0.00014   22.0   5.8       0.56   10.4   0.2    4.0  2  AAA_33           AAA domain
    0.00014   21.8   0.1       0.78    9.7   0.1    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00015   21.6   0.2       0.29   11.0   0.0    2.8  2  MobB             Molybdopterin guanine dinucleotide synthesis
    0.00016   21.2   1.6          2    7.8   0.1    4.5  4  TniB             Bacterial TniB protein
    0.00017   21.4   3.1       0.18   11.5   0.0    3.6  4  IstB_IS21        IstB-like ATP binding protein
    0.00017   21.6   0.1        4.6    7.1   0.0    3.4  3  NTPase_1         NTPase
    0.00025   20.2   1.4      0.087   11.9   0.0    3.0  2  T2SSE            Type II/IV secretion system protein
    0.00034   20.8   1.3       0.35   11.1   0.2    4.2  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
    0.00039   20.8   0.6       0.67   10.3   0.0    2.7  2  AAA_19           AAA domain
    0.00062   19.3   0.0       0.54    9.7   0.0    2.5  2  AAA_7            P-loop containing dynein motor region
    0.00068   19.4   0.0       0.75    9.5   0.0    2.3  2  AAA_24           AAA domain
     0.0013   19.2   0.0        1.2    9.7   0.0    2.8  2  AAA_18           AAA domain
     0.0014   18.8   1.1       0.92    9.6   0.1    2.6  2  DUF87            Helicase HerA, central domain
     0.0021   17.9   1.9        0.5   10.1   0.5    3.1  2  DEAD             DEAD/DEAH box helicase
     0.0028   18.0   0.0        1.5    9.3   0.0    2.5  2  RNA_helicase     RNA helicase
     0.0034   16.6   0.1        2.1    7.5   0.0    2.5  2  NB-ARC           NB-ARC domain
     0.0035   17.4   1.9       0.74    9.9   0.1    2.8  2  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
     0.0037   17.0   1.1        3.3    7.4   0.0    2.7  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
     0.0041   17.2   0.0        1.9    8.6   0.0    2.6  2  MMR_HSR1         50S ribosome-binding GTPase
     0.0041   17.3   0.1        1.4    9.2   0.0    2.4  2  Roc              Ras of Complex, Roc, domain of DAPkinase
     0.0051   16.7   0.2          2    8.3   0.0    2.6  2  APS_kinase       Adenylylsulphate kinase
     0.0063   16.2   0.0        4.3    6.9   0.0    2.6  2  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
     0.0073   15.9   0.0        2.2    7.8   0.0    2.5  2  SRP54            SRP54-type protein, GTPase domain
     0.0088   15.3   0.1        3.7    6.8   0.0    2.4  2  Zeta_toxin       Zeta toxin
  ------ inclusion threshold ------
      0.015   14.7   0.2        3.8    6.8   0.0    2.7  2  ATPase           KaiC
      0.016   14.2   0.1        2.5    6.9   0.0    2.3  2  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
      0.016   14.6   0.4        4.6    6.6   0.0    3.0  3  PhoH             PhoH-like protein
      0.024   14.2   0.1        3.6    7.1   0.0    2.6  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.029   13.8   1.3        6.6    6.1   0.0    2.5  2  Pox_A32          Poxvirus A32 protein
      0.035   13.3   0.0        3.3    6.8   0.0    2.2  2  G-alpha          G-protein alpha subunit
      0.039   13.3   0.2        4.7    6.5   0.0    2.7  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.055   13.7   0.0         12    6.1   0.0    2.7  2  AAA_28           AAA domain
       0.07   13.1   0.0        1.7    8.7   0.0    2.7  2  ResIII           Type III restriction enzyme, res subunit
      0.076   11.6   0.0        3.8    6.0   0.0    2.9  3  AAA_13           AAA domain
        0.2   11.4  10.1        2.2    8.0   0.0    3.7  3  AAA_30           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.1   6.4e-32   2.2e-29       2     137 .]      24     182 ..      23     182 .. 0.93
   2 !  108.6   0.0   9.5e-34   3.3e-31       1     137 []     296     448 ..     296     448 .. 0.93

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 6.4e-32
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG...B-HHHCC.HCEEEE-SS..--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx...xxxxxxx.xxxxxxxxx..xxxxxxxxxxxx........... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke...qeleslr.keigvlpqe..pqlfpeltvren........... 79 
                 +n+s+++++ge++a+vGe+G+GK+t +++++gll +    ++G+i l+g+ +++   ++l++lr  +i+ +pq+  ++l+p +t++++           
  CTQ28299.1  24 HNISFSIQRGEMLAFVGESGSGKTTTAQAIIGLLADnarrDAGRIVLNGEVISDwsdIRLNRLRgVSISLVPQDpgNSLNPVKTIGQQveeilrlhqsl 122
                 89*******************************9988899**********99999885555555169*******9999*********9*********** PP

                 ...HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                    e+++++ ++l+k+gl++ ++++ ++ p++LSgG+kqrv +a a++ +p+l+++DEpt+
  CTQ28299.1 123 saaERRQQVLNLLAKVGLSH-PEQRFDQYPHQLSGGMKQRVLIAIAIALQPDLIIADEPTS 182
                 *9999999************.99999*********************************96 PP

  == domain 2  score: 108.6 bits;  conditional E-value: 9.5e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH..............H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx..............x RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren..............e 80 
                 l+ vs+++++g+++a+vGe+G+GK+tL+++l+g ++ ++G++++dg d  +   +  ++lr++i+++ q+  ++l+p+ t+                 +
  CTQ28299.1 296 LDSVSFEVRRGSTHALVGESGSGKTTLARILLGFERADAGQVTIDGIDAGHlsrEAQRQLRRKIQFVYQNpfASLDPRQTLFAIieeplknferlsaaT 394
                 789********************************************99999989999************988999999987778999**999998877 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++++e +++++ l     + +++ p++LSgGq+qrva+aral+ +p +l+lDE+t+
  CTQ28299.1 395 RRQRVESVAARVALAP---ELLSRTPRELSGGQRQRVAIARALILEPAILVLDEATS 448
                 7788999999999777...7777778*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0037       1.3       3      46 ..      37      78 ..      35     100 .. 0.71
   2 !   34.0   0.6   7.5e-11   2.6e-08     206     301 ..     116     216 ..      79     218 .. 0.76
   3 !   12.1   0.1   0.00037      0.13       3      36 ..     310     341 ..     309     383 .. 0.69
   4 !   13.2   0.5   0.00017     0.059     233     300 ..     416     481 ..     410     484 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0037
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkip 46
                +++G  gsGK++  +a+ +l   +++++++      +g+ ++++
  CTQ28299.1 37 AFVGESGSGKTTTAQAIIGLL--ADNARRDAGRIVLNGEVISDW 78
                79***************9998..455555444444444444444 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 7.5e-11
      AAA_21 206 eeliasvderlrer.......gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltT 296
                  +l+ s + ++r+         v + +++++ +  +++lS G+k+   ++ a++ ++   +l++ DEp + L+  +++r+l+ll++l+r  g+ v+++T
  CTQ28299.1 116 LRLHQSLSAAERRQqvlnllaKVGLSHPEQRFDQYPHQLSGGMKQRVLIAIAIALQP---DLIIADEPTSALDVTVQKRILDLLDILRReSGTAVLFVT 211
                 3333333333333355666668888899999999***********955555555555...************************99999999******* PP

      AAA_21 297 HSpll 301
                 H+  l
  CTQ28299.1 212 HDLAL 216
                 **887 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00037
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdel 36 
                 +l+G  gsGK++L ++l ++ r+  d+ + t++ 
  CTQ28299.1 310 ALVGESGSGKTTLARILLGFERA--DAGQVTIDG 341
                 79***************887543..333333333 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 0.00017
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSpl 300
                 ++relS G+++  a++ al+  +   ++l++DE  + L+  +++ +l ll +l++  g   ++ TH+  
  CTQ28299.1 416 TPRELSGGQRQRVAIARALILEP---AILVLDEATSALDVTVQAQILALLQQLQQqLGLSYLFITHDLA 481
                 7899*******999999999988...************************88888899********976 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   4.2e-06    0.0015       5     131 ..      33     212 ..      29     216 .. 0.54
   2 !   24.8   0.2   6.2e-08   2.1e-05       9     127 ..     310     475 ..     303     483 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.2e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee.......................................erpevv......fvtlpsstsskdllr 58 
                   +l+ +GesG+GKTt+++ +   l   a   +                                       ++++++         l +s s ++ ++
  CTQ28299.1  33 GEMLAFVGESGSGKTTTAQAIIGLLADNAR--RdagrivlngevisdwsdirlnrlrgvsislvpqdpgnslNPVKTIgqqveeILRLHQSLSAAERRQ 129
                 67899*****************99943322..1246666666666666666666665555555555555555444444444443333333334444444 PP

      AAA_22  59 ellralglelka........erlsseell.ealeqalraravielliiDEaqh.lrseealeeLrsllnl.srkgvqliLvGtp 131
                 ++l+ l   + +        ++++++  + +++  a+  +  + l+i DE    l+  ++ + + +ll++ +r + + +L+ t+
  CTQ28299.1 130 QVLNLLAKVGLShpeqrfdqYPHQLSGGMkQRVLIAIAIALQPDLIIADEPTSaLD-VTVQKRILDLLDIlRRESGTAVLFVTH 212
                 44444444444465555555444444444344444444444488888888888774.333333333333332455555555555 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 6.2e-08
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee.................erpevvfvtlpsstsskdllrellralglelka.................... 70 
                 +++GesG+GKTtl+r ll    ++  a +                 + ++ + +  +++  s d ++ l+ +++++lk+                    
  CTQ28299.1 310 ALVGESGSGKTTLARILLGFERAD--AGQvtidgidaghlsreaqrQLRRKIQFVYQNPFASLDPRQTLFAIIEEPLKNferlsaatrrqrvesvaarv 406
                 79****************997544..4445599999999999776633334444455555677788999999999999999999999999999999999 PP

      AAA_22  71 ......erlsseell.ealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliL 127
                          + +el   + ++ + ara    +++l++DEa   l+   ++++l  L +l+   + g++ ++
  CTQ28299.1 407 alapelLSRTPRELSgGQRQRVAIARALilePAILVLDEATSaLDvtvQAQILALLQQLQQ--QLGLSYLF 475
                 999888555555555455555555555589999*********9988666999999988887..66666644 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   2.9e-06     0.001      26     214 ..      35     227 ..      24     233 .. 0.74
   2 !   22.2   0.0   2.3e-07   7.8e-05      25     211 ..     307     492 ..     295     500 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.9e-06
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCC.CCC--..BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrsekls.dlihk..skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkk 121
                 + a vG+ GSGK+   +Ai  +L +++ +   +  l+ ++i+     + +++   +++++ ++++++    ++  +i ++v++  + +  +     +++
  CTQ28299.1  35 MLAFVGESGSGKTTTAQAIIGLLADNARRDAGRIVLNgEVISDwsDIRLNRLRGVSISLVPQDPGNS---LNPVKTIGQQVEEILRLHQSLSAA-ERRQ 129
                 66889**************999998888776665555267877543444555556666666777666...556667777777766655555544.4568 PP

                 HHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                 +v +ll+++g+s           +LSgG k+ v +a+ +A+q      l + De  +aLD +  k++ +ll+  + ++   v  +++++   a++  ++
  CTQ28299.1 130 QVLNLLAKVGLSHPeqrfdqyphQLSGGMKQRVLIAIAIALQP----DLIIADEPTSALDVTVQKRILDLLDILRRESGTAVLFVTHDLALAAERADRI 224
                 89999999999988899999999********999999999874....5999*******************99777776666666666666666655555 PP

                 EEE CS
                 xxx RF
       SMC_N 212 tkv 214
                 +  
  CTQ28299.1 225 MVF 227
                 544 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 2.3e-07
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--..BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE.EEEEETTEEE-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk..skekasvkkaeveitfdnedkklkiekeevsisrrvkrkge.seykingkevtk 120
                 s  a+vG+ GSGK+ l   +   LG++ a    + +++ +     s+e +++ + +++ +++n+ ++l  +++ + i  +  ++ e  + +  +++v++
  CTQ28299.1 307 STHALVGESGSGKTTLARIL---LGFERA-DAGQVTIDGIDAGhlSREAQRQLRRKIQFVYQNPFASLDPRQTLFAIIEEPLKNFErLSAATRRQRVES 401
                 45799*********998766...998777.5555555554433778889999999*********99988878777776666655542566666677776 PP

                 HHHHHHHHCTT-..STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 kevsellesagi..skelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgv 211
                    +  l+ + +  ++ +LSgG+++ va+a  + +   +p ++ +lDe  +aLD +  +++  ll++ +++    ++ i+++  ++++    v v
  CTQ28299.1 402 VAARVALAPELLsrTPRELSGGQRQRVAIARALIL---EP-AILVLDEATSALDVTVQAQILALLQQLQQQlgLSYLFITHDLATVRRIADSVTV 492
                 555556665555114679*******9999866433...44.5889*********************99988556788899888888777655555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.6   3.3e-05     0.012       9      68 ..      19      82 ..      13     273 .. 0.67
   2 !   27.7   4.1   8.7e-09     3e-06      12     167 ..     296     471 ..     289     476 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.3e-05
      AAA_16  9 leqLlsalervrsgrpelvllsGesGvGKsslvrellralekd.....ggiflrgkcdqlesaip 68
                ++++ + ++  + +r+e++ ++GesG+GK++ ++++   l ++     g i+l+g+  +  s+i+
  CTQ28299.1 19 WREVVHNIS-FSIQRGEMLAFVGESGSGKTTTAQAIIGLLADNarrdaGRIVLNGEVISDWSDIR 82
                555555555.3345569****************98886555546666756666666666633332 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 8.7e-09
      AAA_16  12 LlsalervrsgrpelvllsGesGvGKsslvrellralekd...........ggiflrgkcdqlesaipy..sa.laqalareellrqlldeaesaelea 96 
                 L s+   vr+g+     l+GesG+GK++l+r ll  +e++            g++ r+  +ql+++i +  +  +a++  r +l++ +++++++ e+  
  CTQ28299.1 296 LDSVSFEVRRGS--THALVGESGSGKTTLARILLG-FERAdagqvtidgidAGHLSREAQRQLRRKIQFvyQNpFASLDPRQTLFAIIEEPLKNFERLS 391
                 444444677775..4668****************5.555557788888884467777777777777777875559****99999999999944444444 PP

      AAA_16  97 wrekleeala..avpelagaea..........srllellkrllallsrderplvlvlDdlqwadeaslql.laaLlrlles..kpl 167
                 ++++ +++ +  a  +la+++           +r + +++r+l       +p +lvlD++  a + + q+ + aLl+ l++  + l
  CTQ28299.1 392 AATRRQRVESvaARVALAPELLsrtprelsggQRQRVAIARAL----I-LEPAILVLDEATSALDVTVQAqILALLQQLQQqlG-L 471
                 4443333333344444444444333332222233333333333....2.2369********99998888888888888777342.3 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.4e-06    0.0019       2      23 ..     234     255 ..     233     279 .. 0.88
   2 !   18.5   0.0   6.3e-06    0.0022       1      33 [.     499     531 ..     499     537 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5.4e-06
   oligo_HPY   2 ErgpssklfdeplHPYTkaLlr 23 
                 E+g +++++++p+HPYT+ Ll+
  CTQ28299.1 234 EQGATEAIVQRPQHPYTRQLLH 255
                 99******************97 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 6.3e-06
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd 33 
                 vE g++++lf  p+  YT+ L++++p++ ++  
  CTQ28299.1 499 VEHGDVNRLFAAPQQAYTRELIAAIPQVSSRLA 531
                 8*************************9987765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   9.5e-06    0.0033      13      49 ..      24      60 ..      17      65 .. 0.79
   2 !   14.5   0.1   6.5e-05     0.022      14      38 ..     298     322 ..     294     326 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 9.5e-06
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDAiqalLvpa 49
                ++ +++i++ ++  ++G+sGsGK+T   Ai+ lL  +
  CTQ28299.1 24 HNISFSIQRGEMLAFVGESGSGKTTTAQAIIGLLADN 60
                336778886669***************9999998755 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 6.5e-05
      AAA_29  14 ghtieidlkgatlltGpsGsGKSTl 38 
                   ++e+++ +++ l+G+sGsGK+Tl
  CTQ28299.1 298 SVSFEVRRGSTHALVGESGSGKTTL 322
                 56778875559*************8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0021      0.72      90     121 ..      23      55 ..       9      67 .. 0.81
   2 !   16.0   0.0   2.5e-05    0.0085      83     130 ..     289     337 ..     273     352 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0021
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallp 121
                  +++++  ++  ++ ++vG+SG GK+t   a+++
   CTQ28299.1  23 VHNISFSIQRgEMLAFVGESGSGKTTTAQAIIG 55 
                  667777777769**************9888776 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 2.5e-05
                  -TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  83 saktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                   ++  ++l++++ +++  +t +lvG+SG GK+tL   ll+ +++  g+v
   CTQ28299.1 289 GKQALQALDSVSFEVRRgSTHALVGESGSGKTTLARILLGFERADAGQV 337
                  5566678888888888779*******************99777777766 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1    0.0022      0.75       2      22 ..      37      57 ..      36     185 .. 0.87
   2 !    9.6   0.0    0.0034       1.2       3      34 ..     311     344 ..     309     382 .. 0.67
   3 ?    5.0   0.0     0.087        30      31     108 ..     409     476 ..     385     499 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0022
                EEESSTTSSHHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavakel 22
                 ++G  G GKT++a+a++  l
  CTQ28299.1 37 AFVGESGSGKTTTAQAIIGLL 57
                589**************9876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0034
                 EESSTTSSHHHHHHHHHHH..HTHEEEEEETTTC CS
         AAA   3 lyGppGtGKTllakavake..lgvefleisgsel 34 
                 l+G  G GKT+la+ +     +++  ++i+g + 
  CTQ28299.1 311 LVGESGSGKTTLARILLGFerADAGQVTIDGIDA 344
                 89************99765223333444444444 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.087
                 TTTCSSSSTTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEE CS
         AAA  31 gsellskyvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskviviga 108
                 ++ells +  e +   r+ ++ a++   +p il++DE+ +               v++q+l+ l++++++ + +  + +
  CTQ28299.1 409 APELLSRTPRELSGGQRQRVAIARALIlEPAILVLDEATSALDVT----------VQAQILALLQQLQQQLG-LSYLFI 476
                 56777777788888888888888887799*********9998777..........88888888888887644.444444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   0.00011     0.039      15      50 ..      26      64 ..      14     145 .. 0.82
   2 !    8.5   0.0    0.0073       2.5      23      37 ..     310     324 ..     291     327 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 0.00011
      AAA_23 15 idF...skgltlItGpNGaGKTTildAiklaLygetprl 50
                i F      + +++G+ G+GKTT  +Ai   L   ++r 
  CTQ28299.1 26 ISFsiqRGEMLAFVGESGSGKTTTAQAIIGLLADNARRD 64
                666654456789****************99988876554 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0073
      AAA_23  23 lItGpNGaGKTTild 37 
                 +++G+ G+GKTT+ +
  CTQ28299.1 310 ALVGESGSGKTTLAR 324
                 79**********976 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00033      0.11      22      71 ..      33      81 ..      24      91 .. 0.74
   2 ?    1.4   0.0      0.59     2e+02     288     366 ..     145     214 ..      99     217 .. 0.77
   3 ?    7.2   0.0     0.011       3.6      25      50 ..     308     333 ..     295     397 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00033
      AAA_15 22 seeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeni 71
                 e +  ++G+ +sGK++ ++a+  +l  + + +   i+++ e ++++ +i
  CTQ28299.1 33 GE-MLAFVGESGSGKTTTAQAIIGLLADNARRDAGRIVLNGEVISDWSDI 81
                34.899****************9888877666666666666666666555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.59
      AAA_15 288 ddeelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHSp 366
                   ++++ ++ + G+++ +l+++ i+   +          ++ +EP   L    qk + +ll  l +++ t v++ TH  
  CTQ28299.1 145 QRFDQYPHQLSGGMKQRVLIAIAIALQPDL---------IIADEPTSALDVTVQKRILDLLDILRRESGTAVLFVTHDL 214
                 677888899999999999999998876655.........9999999999999999999999999999999999999975 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.011
      AAA_15  25 ltvliGkNnsGKSsilealdlFlnnk 50 
                 +  l+G+ +sGK++++++l  F   +
  CTQ28299.1 308 THALVGESGSGKTTLARILLGFERAD 333
                 5689**************98776644 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.012       4.2       4      24 ..      38      58 ..      35      67 .. 0.83
   2 !    9.1   0.0    0.0036       1.2       4      20 ..     311     327 ..     309     334 .. 0.91
   3 ?    4.4   0.1     0.098        34      17      89 ..     388     462 ..     385     506 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.012
                EE--SSSSHHHHHHHGGGGBS CS
       AAA_5  4 LvGppGtgKselaerlaaaln 24
                 vG++G+gK++ a+ +  +l 
  CTQ28299.1 38 FVGESGSGKTTTAQAIIGLLA 58
                69************9988883 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0036
                 EE--SSSSHHHHHHHGG CS
       AAA_5   4 LvGppGtgKselaerla 20 
                 LvG++G+gK++la+ l+
  CTQ28299.1 311 LVGESGSGKTTLARILL 327
                 9************9876 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.098
                 HHGGGGB.S--EEEEE--TT--HHHHH-.-B--.........--------.G-SEEEEESGGG--.HHHHHHHHHHH CS
       AAA_5  17 erlaaal.nreveyvqltrdtteedlkg.rreikngttslvdsplvraar.egeilvlDEverae.sevlnsLlsll 89 
                 erl+aa+ +++ve v+ +  + +e l   +re+++g+  ++  ++ ra   e++ilvlDE + a    v++  l ll
  CTQ28299.1 388 ERLSAATrRQRVESVAARVALAPELLSRtPRELSGGQ--RQRVAIARALIlEPAILVLDEATSALdVTVQAQILALL 462
                 5677777666666666666666666643145543333..333344445546***********998445555555555 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0033       1.1       8      44 ..      19      55 ..      13      76 .. 0.75
   2 !    7.8   0.1    0.0072       2.5      19      43 ..     303     327 ..     288     338 .. 0.72
   3 ?    1.7   0.0      0.53   1.8e+02      89     130 ..     329     372 ..     327     398 .. 0.76
   4 ?    3.4   0.2      0.16        55      95     121 ..     439     466 ..     424     483 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0033
                     HHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat  8 lkelleqikkvaktdlsvlitGesGtGKellaraihe 44
                      +e++++i+  ++    +  +GesG+GK++ a+ai  
       CTQ28299.1 19 WREVVHNISFSIQRGEMLAFVGESGSGKTTTAQAIIG 55
                     567777888888888888899*************965 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0072
                      CTSSS-EEEECSTTSSHHHHHHHHH CS
  Sigma54_activat  19 aktdlsvlitGesGtGKellaraih 43 
                      ++  ++  ++GesG+GK++lar + 
       CTQ28299.1 303 VRRGSTHALVGESGSGKTTLARILL 327
                      4455667789***********9875 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.53
                      HHHTTTSEEEEETG..GGS-HHHHHHHHHHHHHSEEESBTSSSE CS
  Sigma54_activat  89 fekadgGtlfLDei..gelplelQekLlrvlqegevervGsske 130
                      fe+ad G + +D i  g+l+ e+Q +L r +q    ++  s ++
       CTQ28299.1 329 FERADAGQVTIDGIdaGHLSREAQRQLRRKIQFVYQNPFASLDP 372
                      899*********984468*********99998666555555555 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.16
                      SEEEEETGG.GS-HHHHHHHHHHHHHSE CS
  Sigma54_activat  95 GtlfLDeig.elplelQekLlrvlqege 121
                       +l LDe +  l++++Q+++l +lq+ +
       CTQ28299.1 439 AILVLDEATsALDVTVQAQILALLQQLQ 466
                      6899***75269************9854 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0075       2.6       3      26 ..      37      60 ..      35      83 .. 0.82
   2 !   12.9   0.0    0.0002     0.069       3      85 ..     310     391 ..     309     416 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0075
         PRK  3 gvagsSGaGkttvarklekifgre 26
                +  g+SG+Gktt+a+++  +++ +
  CTQ28299.1 37 AFVGESGSGKTTTAQAIIGLLADN 60
                5679***********998888754 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.0002
         PRK   3 gvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleerkrakekevsflspeandfdllyevlkelkegk 85 
                 ++ g+SG+Gktt+ar l   f+r+    ++i+g+    l r  ++   ++ +   ++ +  l+p+   f+ ++e lk+++   
  CTQ28299.1 310 ALVGESGSGKTTLARILL-GFERADAGQVTIDGIDAGHLSREAQRQLRRKIQFVYQNPFASLDPRQTLFAIIEEPLKNFERLS 391
                 578*********998765.6888888889999999999999999988999999999********************9987655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0    0.0002     0.069       3      27 ..      36      60 ..      34      71 .. 0.86
   2 !   11.2   0.1   0.00073      0.25       2      20 ..     308     326 ..     307     337 .. 0.87
   3 ?   -0.8   0.6       3.8   1.3e+03      71     123 ..     426     474 ..     347     506 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0002
                EEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT  3 vilqGeaGsGKTtLlqklalawaeg 27
                ++  Ge+GsGKTt +q ++ ++a++
  CTQ28299.1 36 LAFVGESGSGKTTTAQAIIGLLADN 60
                6789***************999986 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00073
                 CEEEEC-TTTCHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkl 20 
                 + +l Ge+GsGKTtL++ l
  CTQ28299.1 308 THALVGESGSGKTTLARIL 326
                 56899**********9855 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 3.8
                 C.CHHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EE CS
       NACHT  71 e.vwavllelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasl 123
                 + v + ++ + e + l+lD +  + +   q   +++  lL++l ++  l  + l
  CTQ28299.1 426 QrVAIARALILEPAILVLDEATSALDVTVQ---AQILALLQQLQQQ--LGLSYL 474
                 234444444445555777766666555555...6666666666555..444444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00038      0.13      24      54 ..      35      65 ..      21      78 .. 0.86
   2 ?    0.9   0.0      0.74   2.5e+02     175     200 ..     144     169 ..     136     174 .. 0.84
   3 ?    5.5   0.0     0.028       9.7      27      44 ..     311     328 ..     295     366 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00038
  Mg_chelatase 24 nlllvGppGsGKtmlakrlpsllpplseeea 54
                   l +vG +GsGKt  a+++ +ll++  +++a
    CTQ28299.1 35 MLAFVGESGSGKTTTAQAIIGLLADNARRDA 65
                  6789********************9887765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.74
  Mg_chelatase 175 ekeierYlsklsgplldRidlqvevk 200
                   e++ ++Y ++lsg +  R+ + +++ 
    CTQ28299.1 144 EQRFDQYPHQLSGGMKQRVLIAIAIA 169
                   677899*************9999884 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.028
  Mg_chelatase  27 lvGppGsGKtmlakrlps 44 
                   lvG +GsGKt la+ l +
    CTQ28299.1 311 LVGESGSGKTTLARILLG 328
                   79***********98865 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.014       4.9      30      52 ..      30      52 ..      13      77 .. 0.86
   2 ?    0.5   0.0       1.1   3.7e+02     165     188 ..     188     212 ..     117     213 .. 0.82
   3 !    9.5   1.7    0.0019      0.67      31      50 ..     304     323 ..     283     479 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.014
      AAA_25 30 lpagelallaGapgtGKttlald 52
                + +ge  +++G +g+GKtt a  
  CTQ28299.1 30 IQRGEMLAFVGESGSGKTTTAQA 52
                7899***************9865 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.1
      AAA_25 165 v.galvealeriarrtgaavllvhH 188
                 v +++++ l+ ++r+ g avl+v H
  CTQ28299.1 188 VqKRILDLLDILRRESGTAVLFVTH 212
                 248899999999***********99 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.0019
      AAA_25  31 pagelallaGapgtGKttla 50 
                 ++g++++l+G +g+GKttla
  CTQ28299.1 304 RRGSTHALVGESGSGKTTLA 323
                 689****************8 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.2    0.0016      0.56       2      20 ..      36      54 ..      35     223 .. 0.81
   2 !    9.7   1.1    0.0026      0.91       4      20 ..     311     327 ..     309     401 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0016
      AAA_33  2 vllvGlpGsGKstlaerll 20
                + +vG +GsGK+t a+ ++
  CTQ28299.1 36 LAFVGESGSGKTTTAQAII 54
                679************9874 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0026
      AAA_33   4 lvGlpGsGKstlaerll 20 
                 lvG +GsGK+tla+ ll
  CTQ28299.1 311 LVGESGSGKTTLARILL 327
                 79***********9886 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0027      0.93      17      41 ..      29      55 ..      14      62 .. 0.76
   2 !    9.7   0.1    0.0023      0.78      18      40 ..     303     327 ..     284     338 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0027
                CH..TEEEEEEESTTSSHHHHHHHHHH CS
        TsaE 17 al..gdvilLeGdLGaGKTtlvrglak 41
                ++  g+++++ G+ G+GKTt +++++ 
  CTQ28299.1 29 SIqrGEMLAFVGESGSGKTTTAQAIIG 55
                2344889****************9986 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0023
                 H..TEEEEEEESTTSSHHHHHHHHH CS
        TsaE  18 l..gdvilLeGdLGaGKTtlvrgla 40 
                 +  g++ +L G+ G+GKTtl+r l+
  CTQ28299.1 303 VrrGSTHALVGESGSGKTTLARILL 327
                 13466799*************9876 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00084      0.29       1      26 [.      35      60 ..      35      65 .. 0.89
   2 !    7.6   0.0    0.0094       3.2       3      21 ..     310     328 ..     308     339 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00084
        MobB  1 vlgivgksgsGKTtLleklipelkar 26
                +l++vg sgsGKTt  + +i  l+++
  CTQ28299.1 35 MLAFVGESGSGKTTTAQAIIGLLADN 60
                589*****************999876 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0094
        MobB   3 givgksgsGKTtLleklip 21 
                 ++vg sgsGKTtL   l+ 
  CTQ28299.1 310 ALVGESGSGKTTLARILLG 328
                 589**********988775 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.32   1.1e+02      33      53 ..      31      51 ..      24      68 .. 0.85
   2 ?    1.9   0.1      0.37   1.3e+02     109     173 ..     161     223 ..     145     233 .. 0.77
   3 ?    4.3   0.0     0.069        24      19      53 ..     292     324 ..     284     336 .. 0.72
   4 !    7.8   0.1    0.0057         2     118     157 ..     436     473 ..     412     484 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.32
        TniB 33 krmpnlllvGdsnnGKtmive 53
                +r + l +vG+s  GKt+ ++
  CTQ28299.1 31 QRGEMLAFVGESGSGKTTTAQ 51
                56678999*********9876 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.37
        TniB 109 qqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGteealralrtDp 173
                 +  +++  +l++ ++i DE  ++l   ++ q+++l +l  L +e   ++  v  + al+a r+D 
  CTQ28299.1 161 RVLIAIAIALQPDLIIADEPTSAL--DVTVQKRILDLLDILRRESGTAVLFVTHDLALAAERADR 223
                 4555666789999***********..566678899999999999988888888887777777776 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.069
        TniB  19 ilerLeeLleypkrkrmpnlllvGdsnnGKtmive 53 
                 +l+ L+++       r +   lvG+s  GKt++++
  CTQ28299.1 292 ALQALDSVSFE--VRRGSTHALVGESGSGKTTLAR 324
                 44444444433..344467899**********976 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0057
        TniB 118 lkvrvLiiDEihnllagsarkqreflnalksLgnelkipi 157
                 l++ +L++DE  ++l   ++ q ++l++l++L+++l ++ 
  CTQ28299.1 436 LEPAILVLDEATSAL--DVTVQAQILALLQQLQQQLGLSY 473
                 5778***********..6667889***********99886 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0074       2.6      44      67 ..      30      53 ..      12      67 .. 0.86
   2 ?   -1.4   0.1       4.8   1.7e+03     103     151 ..     166     216 ..     156     225 .. 0.66
   3 !   11.5   0.0   0.00052      0.18      29      70 ..     287     330 ..     272     354 .. 0.85
   4 ?   -1.5   0.1         5   1.7e+03     102     136 ..     431     467 ..     418     483 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0074
   IstB_IS21 44 iekkenivllGpsGvGKshlaial 67
                i++ e ++++G sG GK+  a a+
  CTQ28299.1 30 IQRGEMLAFVGESGSGKTTTAQAI 53
                8999***************99997 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 4.8
   IstB_IS21 103 lkrllkvdllilDd..lgllpldqaeaellfeviekryerrsiiitsnlpf 151
                 ++  l++dl+i D+   +l    q+   +l++++ +  +++ + +t +l +
  CTQ28299.1 166 IAIALQPDLIIADEptSALDVTVQKRILDLLDILRRESGTAVLFVTHDLAL 216
                 555678899999983223333344555677788877777777777776655 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00052
   IstB_IS21  29 sldkrkvkeLatlsf.iekkenivllGpsGvGKshlaia.lgve 70 
                 sl k+++++L + sf +++    +l+G sG GK+ la   lg e
  CTQ28299.1 287 SLGKQALQALDSVSFeVRRGSTHALVGESGSGKTTLARIlLGFE 330
                 5678899********8899999**************95414555 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 5
   IstB_IS21 102 alkrllkvdllilDdlgllpld...qaeaellfeviek 136
                 a + +l++++l+lD+     ld   qa+   l++ +++
  CTQ28299.1 431 ARALILEPAILVLDEAT-SALDvtvQAQILALLQQLQQ 467
                 44557788999999964.33440013334444444444 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.021       7.3       5      27 ..      39      61 ..      35      71 .. 0.83
   2 ?    4.0   0.0      0.12        42      59     135 ..     134     214 ..     122     238 .. 0.81
   3 ?    7.1   0.0     0.013       4.6       4      44 ..     311     353 ..     308     397 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.021
                E--TTSSHHHHHHHHHHHH...G CS
    NTPase_1  5 TGppGvGKtTlvkkvlellkssg 27
                 G++G+GKtT  + ++ ll+++ 
  CTQ28299.1 39 VGESGSGKTTTAQAIIGLLADNA 61
                599**************998765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.12
                 EEEETT.---SSEETTEEE-HHH.HHHHHHHHHHHHHHHH-EEEE--.-STTGGG-HHHHHHHHHHHT..TTSEEEEE--SS CS
    NTPase_1  59 iLarve.akreprvgkyvvdves.feelalealrkalseadviviDE.iGkmElkskkfkeaveevLk..sekpvlavihrr 135
                  La+v+ ++ e r+++y  ++   +++ +l a+  a  ++d+i+ DE    + ++++k +  + ++L+  s++ vl+v h  
  CTQ28299.1 134 LLAKVGlSHPEQRFDQYPHQLSGgMKQRVLIAIAIA-LQPDLIIADEpTSALDVTVQKRILDLLDILRreSGTAVLFVTHDL 214
                 577888677788999999999877999999999877.59********55789999999999999999877889999999876 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.013
                 EE--TTSSHHHHHHHHH..HHH...GGGEEEEEEEEE------ CS
    NTPase_1   4 iTGppGvGKtTlvkkvl..ellkssgvkvgGfyteevreggrr 44 
                 + G++G+GKtTl + +l  e  +  +v+++G+ +    ++ +r
  CTQ28299.1 311 LVGESGSGKTTLARILLgfERADAGQVTIDGIDAGHLSREAQR 353
                 77**********9887633667777999999988776644444 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00025     0.087     104     157 ..       5      61 ..       1      92 [. 0.78
   2 ?    5.2   0.8     0.027       9.2     126     156 ..     303     333 ..     193     365 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00025
       T2SSE 104 tlddlgaeealkekiaev...lrkavrerglilvsGgTgsGKttllyallkeinksd 157
                 +++dl+++ + + + +ev   ++ ++++  ++ + G  gsGKtt++ a++  ++++ 
  CTQ28299.1   5 SVEDLRISYRSRGEWREVvhnISFSIQRGEMLAFVGESGSGKTTTAQAIIGLLADNA 61 
                 556666666666555544111556899999999*****************9998773 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.027
       T2SSE 126 vrerglilvsGgTgsGKttllyallkeinks 156
                 vr+  +  + G  gsGKttl+ +ll +  ++
  CTQ28299.1 303 VRRGSTHALVGESGSGKTTLARILLGFERAD 333
                 4444444567999*******99999875555 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1      0.18        63      24      86 ..     145     194 ..     113     197 .. 0.59
   2 !   11.1   0.2     0.001      0.35      63      89 ..     437     463 ..     398     464 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.18
     SbcCD_C  24 kelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatlle 86 
                 +++++   +lSGG kq  + +a+a al             ++l++ DE  s lD + ++++l+
  CTQ28299.1 145 QRFDQYPHQLSGGMKQ-RVLIAIAIALQ------------PDLIIADEPTSALDVTVQKRILD 194
                 5556666677777773.33444444432............44555555555555555555555 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.001
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                  +++++LDEA s lD + +a++l+ll+
  CTQ28299.1 437 EPAILVLDEATSALDVTVQAQILALLQ 463
                 3789*******************9997 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0019      0.67      10      46 ..      33      69 ..      25      72 .. 0.85
   2 !    8.0   0.0      0.01       3.4      10     127 ..     306     464 ..     298     476 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0019
      AAA_19 10 ekvllvtaGpGtGKTrvlkhivallvelggvkpeeil 46
                 ++l+ ++  G+GKT++ ++i+ ll ++ ++++ +i+
  CTQ28299.1 33 GEMLAFVGESGSGKTTTAQAIIGLLADNARRDAGRIV 69
                567778999*****************99999887776 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.01
      AAA_19  10 ekvllvtaGpGtGKTrvlkhiva.llvelggvkpeeillvaftgrAakelrerlaalgae..................atTiHrlal............ 77 
                  ++ ++++  G+GKT++ +  +  +  ++g+v  + i +  + + A ++lr +++ + ++                                       
  CTQ28299.1 306 GSTHALVGESGSGKTTLARILLGfERADAGQVTIDGIDAGHLSREAQRQLRRKIQFVYQNpfasldprqtlfaiieepL-------Knferlsaatrrq 397
                 5667899*********999888635678899999*****************9998777778999999666666665552.......0333333344444 PP

      AAA_19  78 ...............ldfddlltealelle..............eaeeekklqeeellivDEf.qdvd.elqyrLlkallg 127
                                l                                +  + e ++l+ DE+ + +d  +q ++l  l +
  CTQ28299.1 398 rvesvaarvalapelL-------------SrtprelsggqrqrvA-IARALILEPAILVLDEAtSALDvTVQAQILALLQQ 464
                 4444444443333331.............2444444455554432.23344557778888986356777777766665554 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0016      0.54      28      55 ..      28      55 ..      21      63 .. 0.82
   2 ?    6.8   0.0     0.012       4.2      31      60 ..     304     333 ..     298     377 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0016
       AAA_7 28 lllknkkpvllvGptGtGKtviikdllk 55
                  ++++  + +vG++G+GKt++++ ++ 
  CTQ28299.1 28 FSIQRGEMLAFVGESGSGKTTTAQAIIG 55
                5678889999************998765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.012
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkldke 60 
                 +++    lvG++G+GKt++++ ll     +
  CTQ28299.1 304 RRGSTHALVGESGSGKTTLARILLGFERAD 333
                 56667789**********998776554444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0079       2.7       4      21 ..      35      52 ..      32      69 .. 0.87
   2 !    9.5   0.0    0.0022      0.75       6      22 ..     310     326 ..     305     362 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0079
      AAA_24  4 kiliyGpsgiGKTtlake 21
                +++ +G+sg+GKTt+a  
  CTQ28299.1 35 MLAFVGESGSGKTTTAQA 52
                57789**********976 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0022
      AAA_24   6 liyGpsgiGKTtlakel 22 
                 +++G+sg+GKTtla+ l
  CTQ28299.1 310 ALVGESGSGKTTLARIL 326
                 799***********876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.031        11       4      22 ..      39      57 ..      37     124 .. 0.76
   2 !    9.7   0.0    0.0035       1.2       3      22 ..     311     327 ..     310     376 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.031
      AAA_18  4 tGtpGvGKttlakeLskrl 22
                 G +G+GKtt a+++  +l
  CTQ28299.1 39 VGESGSGKTTTAQAIIGLL 57
                6889*********994433 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0035
      AAA_18   3 ltGtpGvGKttlakeLskrl 22 
                 l G +G+GKttla+ L   l
  CTQ28299.1 311 LVGESGSGKTTLARIL---L 327
                 7899**********99...3 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1    0.0027      0.92      27      55 ..      37      68 ..      33      71 .. 0.78
   2 ?    7.2   0.2     0.014         5      27      44 ..     310     327 ..     301     328 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0027
       DUF87 27 AilgsTGsGKSntvavLleelle...kkgati 55
                A +g++GsGK++t+  ++  l+    ++ ++i
  CTQ28299.1 37 AFVGESGSGKTTTAQAIIGLLADnarRDAGRI 68
                778***************99886664444455 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.014
       DUF87  27 AilgsTGsGKSntvavLl 44 
                 A +g++GsGK++++++Ll
  CTQ28299.1 310 ALVGESGSGKTTLARILL 327
                 889************997 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.035        12      11      34 ..      30      53 ..      20     259 .. 0.82
   2 !   10.1   0.5    0.0014       0.5      18     152 ..     310     468 ..     293     477 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.035
                HHTTCEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 11 ilgggdvlvaaeTGsGKTlaflip 34
                i +g+ +   +e GsGKT+ ++  
  CTQ28299.1 30 IQRGEMLAFVGESGSGKTTTAQAI 53
                4478888899********997654 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0014
                 EEEESTTSSHHHHHHHHHHHHHHHS...................TTSTS-EEEEEESSHHHH.HHH.HHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxx.xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  18 lvaaeTGsGKTlaflipvlqivyet...................kgktgpkalivePtreLa.eqt.lnnlkkfkkyidlrvlliiggvaardqlskld 95 
                  + +e GsGKT+ + i +  + ++                    + +++ + ++  P  +L  +qt +  +++ +k+ + r+++ +  ++ ++  +++ 
  CTQ28299.1 310 ALVGESGSGKTTLARILLGFERADAgqvtidgidaghlsreaqrQLRRKIQFVYQNPFASLDpRQTlFAIIEEPLKNFE-RLSAATRRQRVESVAARVA 407
                 5677889999998888777333333666666666666666666555556777777777777423331344455555554.5555555556666666665 PP

                 TTCSEEEEEHHHHHHHH.HCTSSH...CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHH CS
                 xxxxxxxxxxxxxxxxx.xxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  96 ngvdivvgtpgrlddll.stgkln...lsqvrflVlDEadrlldqgfsdfinrilnqlpqi 152
                   ++++  tp  l     ++  +    + +  +lVlDEa   ld   + +i ++l+ql+q+
  CTQ28299.1 408 LAPELLSRTPRELSGGQrQRVAIAralILEPAILVLDEATSALDVTVQAQILALLQQLQQQ 468
                 669999999988877442222222444566689*************************775 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0042       1.5       3      29 ..      38      64 ..      36      83 .. 0.74
   2 ?    6.2   0.0     0.039        13       3      18 ..     311     326 ..     309     336 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0042
  RNA_helicase  3 lyGpsgeGKStlakeLakallkklklk 29
                  ++G+sg GK+t+a+ ++  l+++   +
    CTQ28299.1 38 FVGESGSGKTTTAQAIIGLLADNARRD 64
                  89*************998888776443 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.039
  RNA_helicase   3 lyGpsgeGKStlakeL 18 
                   l+G+sg GK+tla+ L
    CTQ28299.1 311 LVGESGSGKTTLARIL 326
                   79**********9986 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0061       2.1      21      41 ..      34      54 ..      19      63 .. 0.86
   2 ?    6.4   0.0     0.013       4.6      24      38 ..     310     324 ..     296     330 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0061
                EEEEEEESTTSSHHHHHHHHC CS
      NB-ARC 21 lvvalvGmgGvGKttlakqil 41
                 ++a+vG  G+GKtt a+ i+
  CTQ28299.1 34 EMLAFVGESGSGKTTTAQAII 54
                4799*************9986 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.013
                 EEEESTTSSHHHHHH CS
      NB-ARC  24 alvGmgGvGKttlak 38 
                 alvG  G+GKttla+
  CTQ28299.1 310 ALVGESGSGKTTLAR 324
                 79***********97 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1    0.0022      0.74       6      27 ..      40      61 ..      36      65 .. 0.87
   2 ?    6.2   0.2      0.03        10       6      22 ..     313     329 ..     310     526 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0022
                SSTTSSHHHHHHHHHHHHHHTT CS
                xxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  6 tkGGvGKTtlaanLaralarrg 27
                + +G+GKTt+a +++ +la++ 
  CTQ28299.1 40 GESGSGKTTTAQAIIGLLADNA 61
                689****************954 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.03
                 SSTTSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLara 22 
                 + +G+GKTtla  L+  
  CTQ28299.1 313 GESGSGKTTLARILLGF 329
                 689*******9888764 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0097       3.3       5      23 ..      37      55 ..      34      61 .. 0.87
   2 ?    7.3   0.0      0.01       3.6       6      22 ..     311     327 ..     308     333 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0097
   PduV-EutP  5 lliGkvgsGKttLtqalkg 23
                 ++G++gsGKtt +qa+ g
  CTQ28299.1 37 AFVGESGSGKTTTAQAIIG 55
                699************9865 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.01
   PduV-EutP   6 liGkvgsGKttLtqalk 22 
                 l+G++gsGKttL++ l 
  CTQ28299.1 311 LVGESGSGKTTLARILL 327
                 89**********99875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.038        13       2      22 ..      36      56 ..      35      77 .. 0.84
   2 !    8.6   0.0    0.0056       1.9       3      26 ..     310     334 ..     308     363 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.038
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                 a+vG + +GK+t  +a++g 
  CTQ28299.1 36 LAFVGESGSGKTTTAQAIIGL 56
                589***************984 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0056
                 EEEESTTSSHHHHHHHHHTS.TEEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.kaiv 26 
                 a+vG + +GK+tL + l+g  +a +
  CTQ28299.1 310 ALVGESGSGKTTLARILLGFeRADA 334
                 89***************99434443 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0      0.05        17       3      20 ..      37      54 ..      35      70 .. 0.85
   2 !    9.2   0.0     0.004       1.4       4      32 ..     311     339 ..     309     361 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.05
                EEESSTTSSHHHHHHCHC CS
         Roc  3 vlvGdsgvGKtsllkrfv 20
                 +vG+sg+GKt+ ++ ++
  CTQ28299.1 37 AFVGESGSGKTTTAQAII 54
                78**********998876 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.004
                 EESSTTSSHHHHHHCHCT-CCC-EEETTT CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsekeksti 32 
                 lvG+sg+GKt+l++ ++  +  +  + ti
  CTQ28299.1 311 LVGESGSGKTTLARILLGFERADAGQVTI 339
                 8************9998766655555444 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0057         2       2      41 ..      33      75 ..      32      80 .. 0.75
   2 ?    5.8   0.0     0.035        12       2      22 ..     306     326 ..     305     355 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0057
                -EEEEEESSTTSSHHHHHHHHHHHHHHTT--...EEEEEHHHH CS
  APS_kinase  2 gvvvwltGlsgsGKstianalekkLvekgis...vylLdGdnv 41
                g ++ + G sgsGK+t a+a+   L ++ ++    ++L+G+++
  CTQ28299.1 33 GEMLAFVGESGSGKTTTAQAIIGLLADNARRdagRIVLNGEVI 75
                6678899*************99999877643111456777665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.035
                 -EEEEEESSTTSSHHHHHHHH CS
  APS_kinase   2 gvvvwltGlsgsGKstianal 22 
                 g +  l G sgsGK+t+a+ l
  CTQ28299.1 306 GSTHALVGESGSGKTTLARIL 326
                 5667799***********987 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.012       4.3       8      37 ..      27      56 ..      22     165 .. 0.76
   2 ?    6.7   0.0     0.015       5.2       5      38 ..     296     330 ..     292     376 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.012
                 HS-EBTT-EEEEEESTTSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  8 lfpivqGqrtlipgafgvGktvisqslskq 37
                  f+i +G+ ++ +g++g Gkt+ +q+++  
   CTQ28299.1 27 SFSIQRGEMLAFVGESGSGKTTTAQAIIGL 56
                 6899*******************9998754 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.015
                  HHHH.S-EBTT-EEEEEESTTSSHHHHHHHHHHHS CS
                  xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   5 lDal.fpivqGqrtlipgafgvGktvisqslskqs 38 
                  lD++ f + +G + +++g++g Gkt++++ l+   
   CTQ28299.1 296 LDSVsFEVRRGSTHALVGESGSGKTTLARILLGFE 330
                  5554377889*****************99887665 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0065       2.2       3      21 ..      35      53 ..      33      70 .. 0.78
   2 ?    5.4   0.0     0.035        12       4      35 ..     309     340 ..     307     387 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0065
                EEEEEESTTSSHHHHHHHH CS
       SRP54  3 villvGlqGaGKTttlaKL 21
                ++++vG  G+GKTtt+  +
  CTQ28299.1 35 MLAFVGESGSGKTTTAQAI 53
                6789***********8655 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.035
                 EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEE CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkegkkvllv 35 
                  +lvG  G+GKTt +  L    ++++ +v + 
  CTQ28299.1 309 HALVGESGSGKTTLARILLGFERADAGQVTID 340
                 579*********98766655555555555555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.018       6.4      18      40 ..      35      57 ..      22      72 .. 0.80
   2 ?    6.8   0.0     0.011       3.7      20      50 ..     310     340 ..     297     363 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.018
  Zeta_toxin 18 lillgGqpGAGKselaellkdel 40
                ++  +G +G+GK+++a+++   l
  CTQ28299.1 35 MLAFVGESGSGKTTTAQAIIGLL 57
                556789***********987665 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.011
  Zeta_toxin  20 llgGqpGAGKselaellkdelerqgnvvrld 50 
                  l+G +G+GK++la+ l    +++ + v++d
  CTQ28299.1 310 ALVGESGSGKTTLARILLGFERADAGQVTID 340
                 589***********99877655566666665 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.041        14      16      37 ..      30      51 ..      25      57 .. 0.89
   2 ?    6.8   0.0     0.011       3.8      17      37 ..     304     324 ..     292     357 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.041
      ATPase 16 ipegrvvlitGepGtGKtifal 37
                i +g++   +Ge+G+GKt+ a+
  CTQ28299.1 30 IQRGEMLAFVGESGSGKTTTAQ 51
                678999999**********987 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.011
      ATPase  17 pegrvvlitGepGtGKtifal 37 
                  +g++  ++Ge+G+GKt++a 
  CTQ28299.1 304 RRGSTHALVGESGSGKTTLAR 324
                 6899999***********985 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.029        10      18      39 ..      36      57 ..      22      84 .. 0.65
   2 ?    6.9   0.0    0.0072       2.5       4      41 ..     296     332 ..     293     345 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.029
  TrwB_AAD_bind 18 ilivGttGsGKtqalekllrai 39
                   +++vG  GsGKt+++++++  +
     CTQ28299.1 36 LAFVGESGSGKTTTAQAIIGLL 57
                   5789********9988765332 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0072
  TrwB_AAD_bind   4 iagvplpkeretqhilivGttGsGKtqalekllraira 41 
                    +++v+++++r   h+ +vG  GsGKt+ ++ ll   ra
     CTQ28299.1 296 LDSVSFEVRRGSTHA-LVGESGSGKTTLARILLGFERA 332
                    678999999999996.68*********99999866555 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.013       4.6      15      39 ..      29      53 ..      20      88 .. 0.74
   2 ?    4.4   0.0     0.064        22      22      37 ..     309     324 ..     290     338 .. 0.77
   3 ?   -1.4   0.0       3.8   1.3e+03     111     132 ..     429     450 ..     425     483 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
                HHHH-SEEEEE--TTSSTTHHHHHH CS
        PhoH 15 alkkndivfaiGpaGtGKtylaval 39
                ++++ +++  +G++G+GKt  a a+
  CTQ28299.1 29 SIQRGEMLAFVGESGSGKTTTAQAI 53
                577889999**********998764 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.064
                 EEEE--TTSSTTHHHH CS
        PhoH  22 vfaiGpaGtGKtylav 37 
                    +G++G+GKt la 
  CTQ28299.1 309 HALVGESGSGKTTLAR 324
                 5679**********95 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3.8
                 GGGTT--B-SEEEEE-SGGG-- CS
        PhoH 111 aymRGrTlndafvilDEAQntt 132
                 a  R   l+ a+++lDEA ++ 
  CTQ28299.1 429 AIARALILEPAILVLDEATSAL 450
                 5556666788888888886643 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.071        25       4      31 ..      37      69 ..      34      91 .. 0.74
   2 ?    7.1   0.0     0.011       3.6       4      23 ..     310     331 ..     307     357 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.071
                EEEESTTCCHHHHHHHHH.....CT--SS-EEE CS
        cobW  4 vltGflGsGKTtLlnhll.....enraglklav 31
                 ++G  GsGKTt  ++++     + r++    v
  CTQ28299.1 37 AFVGESGSGKTTTAQAIIglladNARRDAGRIV 69
                678999******999999887644444444444 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.011
                 EEEESTTCCHHHHHHHHH..CT CS
        cobW   4 vltGflGsGKTtLlnhll..en 23 
                  l+G  GsGKTtL + ll  e+
  CTQ28299.1 310 ALVGESGSGKTTLARILLgfER 331
                 68999********998887533 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.019       6.6      16      29 ..      36      49 ..      29      61 .. 0.83
   2 ?    5.9   0.1     0.022       7.7      17      33 ..     310     326 ..     303     330 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.019
     Pox_A32 16 lalvGgsGsGktvy 29
                la+vG+sGsGkt+ 
  CTQ28299.1 36 LAFVGESGSGKTTT 49
                89**********86 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.022
     Pox_A32  17 alvGgsGsGktvyLlsL 33 
                 alvG+sGsGkt+  + L
  CTQ28299.1 310 ALVGESGSGKTTLARIL 326
                 89*********976555 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0094       3.3      26      50 ..      36      60 ..      20     149 .. 0.74
   2 ?    4.5   0.0     0.048        16      27      43 ..     310     326 ..     294     448 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0094
                EEEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha 26 llllGqseSGKsTilkqlkllykkg 50
                l ++G+s+SGK+T+ + +  l  ++
  CTQ28299.1 36 LAFVGESGSGKTTTAQAIIGLLADN 60
                789***********99987555444 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.048
                 EEEESTTSSHHHHHHHH CS
     G-alpha  27 lllGqseSGKsTilkql 43 
                  l+G+s+SGK+T+ + l
  CTQ28299.1 310 ALVGESGSGKTTLARIL 326
                 599*********98755 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.014       4.7      42      61 ..      36      55 ..      18      62 .. 0.81
   2 ?    3.7   0.0     0.095        33      41      59 ..     309     326 ..     284     347 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.014
                  EEEE--TTSSHHHHHHHHHH CS
  FtsK_SpoIIIE 42 llvaGatgsGKStalntLil 61
                  l  +G +gsGK+t+ +++i 
    CTQ28299.1 36 LAFVGESGSGKTTTAQAIIG 55
                  5679*************995 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.095
                   SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  41 hllvaGatgsGKStalntL 59 
                   h  ++G +gsGK+t  + L
    CTQ28299.1 309 H-ALVGESGSGKTTLARIL 326
                   4.457********987766 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.099        34       3      19 ..      37      53 ..      35      86 .. 0.79
   2 ?    6.1   0.0     0.034        12       3      20 ..     310     327 ..     308     366 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.099
      AAA_28  3 vitGgestGKTtlleaL 19
                +++G +++GKTt+++a+
  CTQ28299.1 37 AFVGESGSGKTTTAQAI 53
                68999*********986 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.034
      AAA_28   3 vitGgestGKTtlleaLa 20 
                 +++G +++GKTtl++ L 
  CTQ28299.1 310 ALVGESGSGKTTLARILL 327
                 78999*********9985 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0048       1.7      13      55 ..      24      64 ..      15      77 .. 0.78
   2 ?    0.8   0.0       1.2   4.2e+02      22      41 ..     304     323 ..     285     334 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0048
                HHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S..... CS
      ResIII 13 enlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee 55
                 n+  ++  +r + + ++ + G+GKT +a ++i  l+ +++++
  CTQ28299.1 24 HNISFSI--QRGEMLAFVGESGSGKTTTAQAIIGLLADNARRD 64
                5555444..4777778999**************9999887655 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 1.2
                 .TTSEEEEEESTTSTHHHHH CS
      ResIII  22 krdkrglikmaTGtGKTlva 41 
                 +r     ++ + G+GKT +a
  CTQ28299.1 304 RRGSTHALVGESGSGKTTLA 323
                 455556678899*****987 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.37   1.3e+02      23      43 ..      40      60 ..      36     130 .. 0.67
   2 ?    6.0   0.0     0.011       3.8      23      43 ..     313     333 ..     310     368 .. 0.80
   3 ?   -0.4   0.0      0.98   3.4e+02     524     579 ..     435     488 ..     429     512 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.37
      AAA_13 23 GwNGaGKTtLSrllrslelge 43
                G  G+GKTt ++++  l   +
  CTQ28299.1 40 GESGSGKTTTAQAIIGLLADN 60
                788*********998874433 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.011
      AAA_13  23 GwNGaGKTtLSrllrslelge 43 
                 G  G+GKTtL+r+l  +e+  
  CTQ28299.1 313 GESGSGKTTLARILLGFERAD 333
                 788***********9998754 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.98
      AAA_13 524 igkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkk 579
                 i +  i v+D   S LD +++  +  l+++   ++   + lfi TH l   + + +
  CTQ28299.1 435 ILEPAILVLDEATSALDVTVQAQILALLQQLQ-QQLGLSYLFI-THDLATVRRIAD 488
                 567899************************97.8999999999.999998888766 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0064       2.2      19      45 ..      34      60 ..      25      73 .. 0.81
   2 ?   -1.9   0.1       6.6   2.3e+03      89     124 ..     171     212 ..     117     267 .. 0.61
   3 ?    5.7   2.5     0.031        11      20      50 ..     308     338 ..     299     472 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0064
      AAA_30 19 rvavltGpAGtGKttalkalreaweaa 45
                 + + +G  G+GKtt+ +a+  +++++
  CTQ28299.1 34 EMLAFVGESGSGKTTTAQAIIGLLADN 60
                477899************998877766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 6.6
      AAA_30  89 g.tllivDEagmv....dtkqlaallkaaek.agakvilvGD 124
                 + +l+i DE   +     +k + +ll+++++ +g+ v++v  
  CTQ28299.1 171 QpDLIIADEPTSAldvtVQKRILDLLDILRReSGTAVLFVTH 212
                 446677777443332222333444444444423455555544 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.031
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrvi 50 
                 +++l+G  G+GKtt+ + l    +a+ g+v 
  CTQ28299.1 308 THALVGESGSGKTTLARILLGFERADAGQVT 338
                 6799***********9999887777755554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              52  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.42
# Mc/sec: 3853.58
//
Query:       CTQ28300.1  [L=328]
Description: putative monooxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-41  141.8   7.8      5e-41  141.1   7.8    1.3  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   7.8   2.8e-45     5e-41      17     305 ..      16     287 ..       4     296 .. 0.79

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 2.8e-45
  Bac_luciferase  17 aasaslrylvelaraaEelGfdavwvaehhggpgga..ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGRfglglgtgg 109
                     +a+ ++r ++e++r+aE+lGfd++w+a+hh+ ++    ++++++la++aa+T+rirlgta+ +l+  +P+++A++aa Ld l++GR+++g g+gg
      CTQ28300.1  16 SAQTRYRLAAEQIRHAERLGFDSAWIAQHHFHEQEGglPSPLVFLAHVAAQTDRIRLGTAIITLPMENPLRVAEDAAVLDLLTDGRLEVGFGSGG 110
                     33458999***********************87777*********************************************************** PP

  Bac_luciferase 110 paveerrfGvdhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgpiPvyvaaaspaglelaarhadglllag...eppeeaae 201
                      ++ +  fG+  ++r a +++ +++++ +wrg++ ++    ++       p p q +  +++a  s +g+  a++ ++gl+l      pp e + 
      CTQ28300.1 111 TPTSFLPFGLTSEQRGAAFADHLHLIHSAWRGDTLSHPDNRLY------PPAP-QLAERIWIATFSAEGAIRAGQAGHGLMLSRtqpRPPGEPRL 198
                     ******************************7777777555534......4555.55488***********************9998988888888 PP

  Bac_luciferase 202 lierlra.gaaeagrdpa...dirvgisltvivadteeeAraearaliagldfyaldsegagreaeaaeiqeeedanlwagaadavpdelvaata 292
                      ++ ++     ++ ++ +   ++r+++s+t  vad+ + A++ a+  +                   +++  +++a ++   +d+v+d l +  a
      CTQ28300.1 199 PLDAIQNpIIDAYLAALPdgvAPRILASRTAFVADSLAHALQVAEPGL-------------------RKQATQHRAAGHTIEGDSVTDYLQQLDA 274
                     8888777533332222223469**********************8888...................2222233333333333333333333344 PP

  Bac_luciferase 293 lvGtpeqvaerla 305
                      vG+pe+v++ la
      CTQ28300.1 275 HVGDPEHVIASLA 287
                     4666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2528.88
//
Query:       CTQ28301.1  [L=363]
Description: Alkylhydroperoxidase AhpD domain protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-13   50.9   1.0    3.6e-13   49.4   0.2    2.3  2  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.22   3.9e+03      24      50 ..      52      77 ..      39     104 .. 0.60
   2 !   49.4   0.2     2e-17   3.6e-13       3      66 ..     225     288 ..     223     314 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.22
                HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
         CMD 24 kereLialavsaangceyCvdaHtraA 50
                 er  +a  v+ +++ +  ++aH+++ 
  CTQ28301.1 52 DERFAVAAKVAKLHQADA-LAAHYAGF 77
                555555556666666555.66776654 PP

  == domain 2  score: 49.4 bits;  conditional E-value: 2e-17
                 HHHHHHHHHHHHCCGSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHH CS
         CMD   3 llraltalreallareggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaq 66 
                 +l+ +t ++++++++ ggL+++ereL+a+++s +ngc yC+++H+r+A +  ++e  ++++la+
  CTQ28301.1 225 VLEQRTLTDKGIFYTAGGLPRAERELAATVASKINGCIYCASVHARKAAQLAKDETAVDTLLAV 288
                 6889999*******8899*******************************999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2970.63
//
Query:       CTQ28302.1  [L=384]
Description: putative major facilitator class transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-36  123.4  69.8    2.8e-34  118.6  54.9    2.0  2  MFS_1     Major Facilitator Superfamily
    1.6e-10   40.5  14.4    1.6e-10   40.5  14.4    3.0  3  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
      0.032   13.5  42.3      0.041   13.2  42.3    1.0  1  MFS_4     Uncharacterised MFS-type transporter YbfB
      0.039   12.5  36.3      0.096   11.2   7.5    2.6  2  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6  54.9   6.2e-38   2.8e-34       1     338 [.       8     328 ..       8     332 .. 0.83
   2 !   10.1   8.7   6.1e-05      0.27     127     171 ..     330     373 ..     322     383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 6.2e-38
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 l+l++f  ++a + ++ +lp  +a+d gis  ++g +++ ya+g ++++++++ ls rf+ ++v+l+ + l +lg +l++f ss++ +l+++r+++G+ 
  CTQ28302.1   8 LALGTFGLGMAEFGIMGVLP-DMAHDVGISIPAAGNMIAWYAFGVVIGAPIMALLSSRFSLKSVMLFLAGLCILGNTLFTF-SSSYaMLALGRLVSGFP 104
                 6899****************.******************************************************888889.66666************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplv 197
                  ga+f +ga+++++++p+ + + a++ + +g+ ++ ++g + g +l ++++Wr++f ++a++ + +f+   ++ +++    + ++  +e          
  CTQ28302.1 105 HGAFFGVGAIILSKIAPPGKVTAAVAGMIGGMTIANLVGVPGGTWLGHHFSWRYTFALIAVFNVAVFLA--IFCWVPTLYDRASTRLRE---------- 191
                 ******************************************************************997..555555555555555555.......... PP

       MFS_1 198 pawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallav 296
                 + ++ l ++   w++++a  ++ +g+++ ++++  ++  v g++    + l+++l++l+++++ l++g++s r+++   ++ a+  +++a+ +l+++a+
  CTQ28302.1 192 Q-FRFLASPA-PWLIFAATMFGNAGVFAWFSYIKPFMLNVSGFA-ESKMMLIMMLAGLGMVVGNLFSGKISGRYSP--LRIAAMTDGVIAVTLLLIFAF 285
                 2.55555555.4544444444445777788888889********.5666667***********************9..666666666666777777777 PP

       MFS_1 297 tssavllllvlvl.iGfglgfvfpsllalasdlappeeagtas 338
                  +++v++l++ +l +   +++  p+ + l+++  + e+ g+a 
  CTQ28302.1 286 GEHKVASLALAFLcCAGLFALSAPLQILLLQNAKGGEMLGAAG 328
                 7778888885555155566766777777777776766666665 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 6.1e-05
       MFS_1 127 sagfslGailgpllgglla.sslgWravfyilaivsllafvlflll 171
                 +++f+lG+++g+  gg+++ + +gW +v + +a++s+la+   +ll
  CTQ28302.1 330 QIAFNLGSAIGAFCGGMMIaQGFGWNSVALPAAALSFLAMS--ALL 373
                 679*************9999*******************55..233 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5  14.4   3.5e-14   1.6e-10      49     191 ..      41     177 ..      28     192 .. 0.93
   2 ?    0.2   4.1     0.059   2.7e+02      45      95 ..     234     285 ..     201     304 .. 0.66
   3 ?    0.5   1.4     0.048   2.2e+02      54      88 ..     332     367 ..     327     383 .. 0.71

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 3.5e-14
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlai 147
                 g + + + +G +iG+ ++ ll+ rf+ k+++l+ a l++ g+ l  ++    s+ +l++gR+++G++ G++ ++  + +s+iAp+ +  a v     ++
  CTQ28302.1  41 GNMIAWYAFGVVIGAPIMALLSSRFSLKSVMLFLAGLCILGNTLFTFSS---SYAMLALGRLVSGFPHGAFFGVGAIILSKIAPPGKVTAAVAGMIGGM 136
                 788999*******************************************...**********************************9999999999999 PP

                 HHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS CS
    Sugar_tr 148 tfGilvaaifglglnktsnadgwrillglqlvpallllilllfl 191
                 t+  lv+   g+ l +  +   wr++++l +v+ ++++++++ +
  CTQ28302.1 137 TIANLVGVPGGTWLGHHFS---WRYTFALIAVFNVAVFLAIFCW 177
                 9999999999999999888...*************999988654 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.059
                 ..HHHHHHHTHHHHHHHHHHHHHHHHHHTT.HHHHHHHHHHHHHHHHHHHH- CS
    Sugar_tr  45 svlsglivsiflvGaiiGslfagllgdrfG.Rkkslliaavlfvigavlqaa 95 
                 ++ + li+ ++ +G ++G lf+g+++ r++  + + ++ +v++v   ++ a+
  CTQ28302.1 234 ESKMMLIMMLAGLGMVVGNLFSGKISGRYSpLRIAAMTDGVIAVTLLLIFAF 285
                 25788999999999*********99999884455555555555544444444 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.048
                 THHHHHHHHHHHHHHH.HHHTTHHHHHHHHHHHHHH CS
    Sugar_tr  54 iflvGaiiGslfagll.gdrfGRkkslliaavlfvi 88 
                 +f++G++iG++ +g++ ++ fG  ++ l aa+l++ 
  CTQ28302.1 332 AFNLGSAIGAFCGGMMiAQGFGWNSVALPAAALSFL 367
                 799********9997515667777777766555554 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  42.3     9e-06     0.041       2     361 ..      12     371 ..      11     373 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9e-06
       MFS_4   2 avalGiGRFsytpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlv 100
                 + +lG++ F    +LP++ +++++s+ +ag + a  + G  +Ga + a   s+   + ++l  + ++ l      + +s a+++l R+++G   ++ + 
  CTQ28302.1  12 TFGLGMAEFGIMGVLPDMAHDVGISIPAAGNMIAWYAFGVVIGAPIMALLSSRFSLKSVMLFLAGLCILGNTLFTFSSSYAMLALGRLVSGFPHGAFFG 110
                 579*****************************************766454444455555666666677777777788999999*********9998886 PP

       MFS_4 101 fgsslvlahaaaarrervgallfaGvGlGiavsgll.vllllqlglsassl..Wlalavlsavllllvalllpraalreasaaaeaakaeqkslpllal 196
                 +g+ ++l+++  a  ++v a++ aG   G+ +++l+ v+ +  lg + s+     ++av+ ++++l+++ ++p    r++   +e+ + +++ +p+l++
  CTQ28302.1 111 VGA-IILSKI--APPGKVTAAV-AGMIGGMTIANLVgVPGGTWLGHHFSWRytFALIAVFNVAVFLAIFCWVPTLYDRASTRLREQFRFLASPAPWLIF 205
                 665.566664..5566788887.5655599999987455655555555544447888999999**********77777777777777888888888887 PP

       MFS_4 197 llaYglaGfGYiitatFlvaiardg.aggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllslls..psplglivssvllGlt 292
                 +++ +   +G  +   ++  +  +  + ++    l+ +l+Gl+++vg l + +++ r    r+ a++  + av +ll  +   + +++l+++ + + + 
  CTQ28302.1 206 AATMF-GNAGVFAWFSYIKPFMLNVsGFAESKMMLIMMLAGLGMVVGNLFSGKISGRYSPLRIAAMTDGVIAVTLLLIFAFgeHKVASLALAFLCCAGL 303
                 76533.33456677778766555542556666778889*******************999999999999999999998774237899************ PP

       MFS_4 293 flaitalvlqlarelappatrrllglmTasfgigQilGpllasllaeatgslalallvaaaalvlaali 361
                 f    +l + l ++  + +   ++g   ++f +g ++G+   +++ ++  + +++ l aaa+ +la+ +
  CTQ28302.1 304 FALSAPLQILLLQNAKGGEMLGAAGG-QIAFNLGSAIGAFCGGMMIAQGFGWNSVALPAAALSFLAMSA 371
                 **999999999888888777666654.689**************9999999999999999999999865 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   7.5   2.1e-05     0.096     261     342 ..      40     119 ..      29     124 .. 0.89
   2 ?    7.9  19.6   0.00021      0.96     143     327 ..     127     304 ..     123     350 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.1e-05
       MFS_2 261 asvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladv 342
                 a ++ +    ++++g+p+++ l +r++ k ++l+ a l+i++ +l+ +   s+++++ +  +++gf+ g+++ + + +l+ +
  CTQ28302.1  40 AGNMIAWYAFGVVIGAPIMALLSSRFSLKSVMLFLAGLCILGNTLFTFS--SSYAMLALGRLVSGFPHGAFFGVGAIILSKI 119
                 555666667899********************************99998..**********************999999865 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00021
       MFS_2 143 svlggvlaailafllvlilgg.lkserkgylifaliialLmllgviivvlgtkervemrkkekteqkeklslleqlkevfrnraflillllfllaalal 240
                 ++++g+++ + +  lv+++gg        ++++ ++ia+  ++++++++  +             ++ +++l+eq++ + +  ++li++++ + + +++
  CTQ28302.1 127 AAVAGMIGGMTIANLVGVPGGtWLGHHFSWRYTFALIAVFNVAVFLAIFCWVPTL---------YDRASTRLREQFRFLASPAPWLIFAATMFGN-AGV 215
                 3444555555555555556553444556677777777777666666666666644.........4899*********999998888777766555.569 PP

       MFS_2 241 gvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlll...qpsnlllflvllviagfg 327
                 + +++    ++  v g ++s+++++++++ +++++g ++  ++  r++  +++++   + +v l+l++++   + ++l+l+++++  ag++
  CTQ28302.1 216 FAWFSYIKPFMLNVSGfAESKMMLIMMLAGLGMVVGNLFSGKISGRYSPLRIAAMTDGVIAVTLLLIFAFgehKVASLALAFLCC--AGLF 304
                 999999999******************************************9999999999999999999654222222222222..2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2771.40
//
Query:       CTQ28303.1  [L=146]
Description: Glyoxalase family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-09   37.7   0.0    2.4e-09   37.5   0.0    1.0  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
  ------ inclusion threshold ------
      0.054   13.8   0.0      0.074   13.3   0.0    1.3  1  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
       0.11   13.3   0.1       0.14   13.0   0.1    1.2  1  Glyoxalase_6  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0     4e-13   2.4e-09       2     128 .]       8     128 ..       7     128 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 4e-13
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGE CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvk 100
                 + hva  v+ l+ s+dFYt+   ++++ + +     +  + a++ + ++  +lvl +++++a+++     + + h+++ + +  ++++ +  ++++g  
  CTQ28303.1   8 FTHVAFTVRCLASSIDFYTRYTAMTVIHQRE-PDLPSARKVAWLSDRTRPFALVLVQSDDPADTPL----GPFGHLGVSCATQAEIDEKVALARREG-V 100
                 68*****************************.6666999***************************....8899***********************.7 PP

                 EEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase 101 vvaepgrhyfgalysfyfrDpdGillei 128
                   +ep+  +   +y+++f DpdG++le+
  CTQ28303.1 101 LRREPEQLGDPVGYFAFFADPDGNTLEL 128
                 99999*********************96 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.074       1      91 [.       9     100 ..       9     117 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
                   EEEEEE-S-HHHHHHHHHH.TT-EES.S--E.EETTTTEEEEEEEETTEEEEEEEESSTT-THHHTS-EEEEEEEEES...-HHHHHHHHCTTTE CS
  Glyoxalase_4   1 dQigivVeDleaavarfsallGvgpw.qryrdepqevdlafallgsgsvqieLieplegpeflaehgeglhhlaywvd...dldaavarleeqGf 91 
                   +++++ V+ l   ++++++   ++++ qr +d p+  ++a++  ++ ++ + L++ ++ +++     + + hl++ +    ++d++va ++ +G+
    CTQ28303.1   9 THVAFTVRCLASSIDFYTRYTAMTVIhQREPDLPSARKVAWLSDRTRPFALVLVQSDDPADT---PLGPFGHLGVSCAtqaEIDEKVALARREGV 100
                   59*****************999996637778889999*********99********999766...788888888888544499999999999986 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.3e-05      0.14       6     105 ..      15     127 ..      10     129 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
  Glyoxalase_6   6 aadpaalaaFwaaalgweveree....aaledpegvgpaaedaatllfqrvpe..paknr....vHldlav...edldaevarlvalGArvlreprd 89 
                   ++  a  ++F+ + + ++v +++     ++++ ++ +    ++ ++++  v+   pa ++     Hl +++   +++d++va + + G  + ++++ 
    CTQ28303.1  15 VRCLASSIDFYTRYTAMTVIHQRepdlPSARKVAWLSD---RTRPFALVLVQSddPADTPlgpfGHLGVSCatqAEIDEKVALARREGVLRREPEQL 108
                   55567778999999977776666444433333333333...33333333333344455533344899996655688899999999999999999999 PP

  Glyoxalase_6  90 gthgr...vlaDPeGneFc 105
                   g++ +    +aDP+Gn   
    CTQ28303.1 109 GDPVGyfaFFADPDGNTLE 127
                   988889**********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1200.09
//
Query:       CTQ28304.1  [L=272]
Description: Polyphosphate kinase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-96  322.5   0.1    1.6e-96  322.3   0.1    1.0  1  PPK2             Polyphosphate kinase 2 (PPK2)
  ------ inclusion threshold ------
        0.1   12.3   0.1        2.4    7.8   0.0    2.4  2  Thymidylate_kin  Thymidylate kinase


Domain annotation for each model (and alignments):
>> PPK2  Polyphosphate kinase 2 (PPK2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.3   0.1  1.7e-100   1.6e-96       2     225 ..      19     242 ..      18     246 .. 0.99

  Alignments for each domain:
  == domain 1  score: 322.3 bits;  conditional E-value: 1.7e-100
                 --HHHHHHHHHHHHHHHHHHHHSGGGGG-EEEEEEEESTTS-HHHHHHHHHTTS-GGG-EEEE--S--HHHHTS-TTHHHHTT---TT-EEEEES-GGG CS
        PPK2   2 lskdeyeeelaklqielvklqekvkaegkklvvifegrDaAGKgGaikrvtealnprvarvvalkaPteeEksqwylqRyvehlPakgeivlFdRswYn 100
                 l++++ye++l+kl +elvklq++v ++g k+ ++fegrD+AGKgG+ik +te+++pr+ rvval+ Pte+Eksq y+qRy++hlPa+geiv+FdRswYn
  CTQ28304.1  19 LDNKAYEKALRKLHVELVKLQRWVVHKGLKVCIVFEGRDGAGKGGTIKAITERVSPRIFRVVALPSPTEREKSQLYFQRYIKHLPAAGEIVIFDRSWYN 117
                 68899********************************************************************************************** PP

                 GGTHHHHHTSS-HHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSS-CCC---CCCCCHHHCHHHHHHHHHHHHHHH--SSS-EE CS
        PPK2 101 ragvervmgfctdkeaerflreipefErmlvesgillvKfwlsiskeeqleRfkeRredPlkqwKlsplDlksrekWddytkakeemlartdteeaPWi 199
                 ragvervmgfct++e+++fl+ +p +Er +vesgi+l+K+wl++s++eq++R+++R++d  k wKlsp+D+ks ++Wd+yt+a+++m+a tdt+ aPW+
  CTQ28304.1 118 RAGVERVMGFCTPEEVQKFLDGAPMVERGMVESGIILLKYWLEVSPQEQERRLRDRIDDGRKIWKLSPMDIKSFNRWDEYTAARDAMFAATDTAWAPWF 216
                 *************************************************************************************************** PP

                 EEE-SSHHHHHHHHHHHHHHHHHHHH CS
        PPK2 200 vveaddKkrarlnvirtllkalkyee 225
                 v +++dKkr rln+i++ll++++ye 
  CTQ28304.1 217 VARSEDKKRVRLNIITHLLSQIPYEA 242
                 **********************9986 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00026       2.4       1      31 [.      53      83 ..      53      92 .. 0.84
   2 ?    1.9   0.0     0.018   1.6e+02      69      90 ..      95     116 ..      87     119 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00026
                     EEESTTSSHHHHHHHHHHHHHHTTE.EEEES CS
  Thymidylate_kin  1 iEGlDGaGKttqaellkerlkeegikvvltr 31
                     +EG DGaGK   ++++ er + +  +vv  +
       CTQ28304.1 53 FEGRDGAGKGGTIKAITERVSPRIFRVVALP 83
                     8******************999988866554 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.018
                      THHHHHHHHHTT-EEEEES-HH CS
  Thymidylate_kin  69 leekikpalkqgktvivdRylf 90 
                      ++++ik   + g++vi+dR  +
       CTQ28304.1  95 FQRYIKHLPAAGEIVIFDRSWY 116
                      4589999999*********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2338.43
//
Query:       CTQ28305.1  [L=61]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00095   19.6   0.1     0.0014   19.0   0.1    1.3  1  CcdA      Post-segregation antitoxin CcdA


Domain annotation for each model (and alignments):
>> CcdA  Post-segregation antitoxin CcdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1     8e-08    0.0014      38      67 ..      26      55 ..      15      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 8e-08
        CcdA 38 ekaerwkeenreaieelNrfveehGlfsde 67
                 ++++ +++++e+i+++N+f+++ G++ d+
  CTQ28305.1 26 LREADKQRQHKEFIAAMNEFIAKGGTLTDD 55
                5788899********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 543.04
//
Query:       CTQ28306.1  [L=108]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-28   98.6   0.1    2.2e-28   98.4   0.1    1.0  1  CcdB      CcdB protein


Domain annotation for each model (and alignments):
>> CcdB  CcdB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.1   1.2e-32   2.2e-28       1      99 [.       5     106 ..       5     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 1.2e-32
        CcdB   1 qFdvYrnpsas.kkaipylldvqsdlldelktrvVvPLlraselskvakrLnpvlevegeevvlltaelaavpakeLgkk..vaslseerdeiiaAlDl 96 
                 qF+vYrn+sa+ +k++py++ vq+d++++l+trv++PL+r ++l++++++++p+++++ ++++l+t++++++++k++ ++  v++ls+ r+ +i+++D+
  CTQ28306.1   5 QFNVYRNCSAQtNKTLPYYMIVQNDYYADLATRVIIPLIRPQQLPRWHQHVVPRINIKFDSFLLCTPMISNLNNKRIPPQdfVCNLSHARQGVIDSIDT 103
                 9****************************************************************************99888***************** PP

        CcdB  97 llt 99 
                 l+t
  CTQ28306.1 104 LIT 106
                 *97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 925.39
//
Query:       CTQ28307.1  [L=219]
Description: formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-19   69.7  17.8    2.8e-19   69.4  17.8    1.1  1  Ni_hydr_CYTB  Prokaryotic cytochrome b561
  ------ inclusion threshold ------
       0.12   12.9  29.7       0.42   11.2  12.9    2.5  2  DUF4405       Domain of unknown function (DUF4405)
        2.5    8.2  11.5       0.72    9.9   0.9    3.4  3  OppC_N        N-terminal TM domain of oligopeptide transport 


Domain annotation for each model (and alignments):
>> Ni_hydr_CYTB  Prokaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4  17.8   4.6e-23   2.8e-19       4     182 .]      13     187 ..      10     187 .. 0.90

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 4.6e-23
                   --TTHHHHHHHHHHHHHHHHHHHHHS------S-GGG-...HHHHHHHHHHHHHHHHHHHHHHH.------------STTTSSSSS----------- CS
  Ni_hydr_CYTB   4 lvarllHWlnallvvllllsgllianlhprlywgdsgk...aralHklaGlvllalllfrllwl.kkakkpspriifrqikrdltlllrgrkpeagk 96 
                    + r++HW+++++++l +lsg+ ++++  ++  +++g+   +r lH ++G+++++ l+f+++    +++ ++++i + + + ++ +   ++ +++gk
    CTQ28307.1  13 FIDRACHWTVVICFFLVALSGISFFFPTLQWLTETFGTpqmGRILHPFFGVLIFVALMFMFVRFvHHNIPDKQDIPWLKGIVEVLKGNEHKVARVGK 109
                   5679******************9999999999998888**99999************666665559******************************* PP

                   -----TTTHHHHHHHHHHHHHHHHHHHT.HHHHHHHH...HTS-THHHHHHH.HHHHHHHHHHHHHHHHHHHHHH---XXXXXXXXX CS
  Ni_hydr_CYTB  97 nnplqklvhlllyvllvvliltGlllsf.aatagfplllddkggaqlarelHellaaallafvvlHiaaallhgpvkkdtlrrMitg 182
                   +n++qk++++ ++ +++vl +tG++++    ++ fp+     +  +    +H  +a++l+  +++H ++a++ +     +++ Mi g
    CTQ28307.1 110 YNAGQKMMFWTIMSMIFVLLVTGVIIWRpYFAEYFPM-----QVIRYSLLIHATSAIILIHAILIHMYMAFWVKG----SIKGMIEG 187
                   **************************99854566655.....9999999***99999999************996....78888876 PP

>> DUF4405  Domain of unknown function (DUF4405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.8    0.0011       6.4       3      59 ..      19      70 ..      17      79 .. 0.79
   2 ?   11.2  12.9     7e-05      0.42       6      66 .]     121     176 ..     116     176 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0011
     DUF4405  3 dlllllsflvlaiSGillsfavlpsgrgaywaflglskhqwrdiHeilgllflilvv 59
                 ++++++f+++a+SGi  +f +l +     +     + ++ r +H ++g+l +++++
  CTQ28307.1 19 HWTVVICFFLVALSGISFFFPTLQWLTETFG-----TPQMGRILHPFFGVLIFVALM 70
                5899***************776663322222.....667789999999999998865 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 7e-05
     DUF4405   6 lllsflvlaiSGillsfavlpsgrgaywa.flglskhqwrdiHeilgllflilvvlHlgl.hw 66 
                 +  +++vl+++G+++++ ++ ++++   +            iH +++++++ ++++H+++  w
  CTQ28307.1 121 IMSMIFVLLVTGVIIWRPYFAEYFPMQVIrY-------SLLIHATSAIILIHAILIHMYMaFW 176
                 444567899********99997776666653.......679******************9777 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.012        71      17      36 ..      22      41 ..      19      52 .. 0.84
   2 ?    0.5   0.2       0.1   6.2e+02      21      36 ..      62      77 ..      60      90 .. 0.63
   3 ?    9.9   0.9   0.00012      0.72      18      45 ..     122     149 ..     120     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.012
      OppC_N 17 vvglvilllllliaifaPli 36
                vv  ++l++l  i++f P +
  CTQ28307.1 22 VVICFFLVALSGISFFFPTL 41
                67789999999999999877 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.1
      OppC_N 21 villlllliaifaPli 36
                 +l++++l+  f  ++
  CTQ28307.1 62 GVLIFVALMFMFVRFV 77
                4666666666665555 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00012
      OppC_N  18 vglvilllllliaifaPliaPydpqdli 45 
                  +++++ll++ + i+ P++a y p+++i
  CTQ28307.1 122 MSMIFVLLVTGVIIWRPYFAEYFPMQVI 149
                 699*****************99995554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1728.19
//
Query:       CTQ28308.1  [L=294]
Description: formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-25   89.6   8.6    1.1e-25   89.6   8.6    1.8  2  Fer4_11         4Fe-4S dicluster domain
      4e-19   68.1   0.1    7.6e-19   67.2   0.1    1.4  1  Form-deh_trans  Formate dehydrogenase N, transmembrane
      3e-14   53.3  25.4    3.6e-07   30.7   7.7    3.1  3  Fer4_7          4Fe-4S dicluster domain
    7.9e-11   42.0  27.5    4.2e-06   26.8   9.2    2.8  2  Fer4_9          4Fe-4S dicluster domain
    8.8e-11   41.8  27.2    1.3e-06   28.4  10.6    3.7  4  Fer4_10         4Fe-4S dicluster domain
    1.3e-09   37.7  34.3    4.4e-05   23.4   3.0    5.0  5  Fer4_6          4Fe-4S binding domain
    2.2e-07   30.4  36.9    3.7e-05   23.4   3.0    5.6  6  Fer4            4Fe-4S binding domain
    4.7e-07   29.5  28.3     0.0079   16.2   1.2    4.6  4  Fer4_2          4Fe-4S binding domain
    6.7e-07   29.3  28.1      4e-06   26.9   7.8    3.8  3  Fer4_21         4Fe-4S dicluster domain
    8.8e-07   29.4  17.8      0.037   14.6   3.6    4.3  4  Fer4_17         4Fe-4S dicluster domain
    5.1e-06   26.6  32.7     0.0017   18.7   2.9    4.5  4  Fer4_4          4Fe-4S binding domain
    0.00033   21.5  30.6       0.15   13.0   0.0    5.1  6  Fer4_16         4Fe-4S double cluster binding domain
     0.0022   18.8  41.6       0.33   12.0   3.3    4.5  4  Fer4_3          4Fe-4S binding domain
     0.0097   14.6   0.3      0.016   13.8   0.3    1.3  1  GP120           Envelope glycoprotein GP120
  ------ inclusion threshold ------
      0.034   14.3  22.4      0.082   13.1   3.7    4.0  4  Fer4_18         4Fe-4S dicluster domain
      0.076   12.8   0.6      0.076   12.8   0.6    4.1  4  Fer4_20         Dihydroprymidine dehydrogenase domain II, 4Fe
      0.079   13.8  18.3       0.21   12.4   2.1    3.8  4  Fer4_22         4Fe-4S dicluster domain
       0.09   13.2  33.4       0.21   12.0   2.9    4.2  5  Fer4_8          4Fe-4S dicluster domain
        0.1   13.2   0.0       0.18   12.4   0.0    1.4  1  APC_u14         Unstructured region on APC between SAMP and A


Domain annotation for each model (and alignments):
>> Fer4_11  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.4       3.7   3.5e+03      52      62 ..      43      53 ..      26      70 .. 0.54
   2 !   89.6   8.6   1.2e-28   1.1e-25       2      99 ..      92     188 ..      91     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.7
     Fer4_11 52 eacPykivrkn 62
                +ac  ++  +n
  CTQ28308.1 43 KACQVACSEWN 53
                23333333344 PP

  == domain 2  score: 89.6 bits;  conditional E-value: 1.2e-28
     Fer4_11   2 ewlflpeqCrhCleppCvasapse.aivkdeetGaVlldektkkeevrevveacPykivrkneetgkvekCdmcldrveaGllpacvescptgalnfgd 99 
                 ewl+  + C+hC ep C++++ps  ai++   +G+V ++++++  ++  ++ +cP++++r n+e ++v kC++c+drv+ G++pacv++cptga++fg+
  CTQ28308.1  92 EWLIRKDGCMHCAEPGCLKACPSAgAIIQYA-NGIVDFQQENCI-GCGYCIAGCPFNVPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFGT 188
                 68999999***************96666665.***********7.****************************************************96 PP

>> Form-deh_trans  Formate dehydrogenase N, transmembrane
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.1   8.1e-22   7.6e-19       1      44 []     246     289 ..     246     289 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 8.1e-22
                     --HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH--B-S-SSTT CS
  Form-deh_trans   1 ISplVelWKGvlKplgalgmaatalagffHYitvGPneveeeee 44 
                     I+++++lWKG+lKpl+a+g++at+++ + HYi++GPn++ +++e
      CTQ28308.1 246 IDTSISLWKGALKPLAAAGFIATFAGLIYHYIGIGPNKEVDDDE 289
                     99*************************************99997 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   7.7   3.8e-10   3.6e-07       1      50 [.      38     114 ..      38     116 .. 0.92
   2 !   25.6  10.7   1.4e-08   1.3e-05       2      52 .]     133     183 ..     132     183 .. 0.76
   3 !    9.3   2.4    0.0018       1.7       2      22 ..     160     189 ..     159     209 .. 0.65

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 3.8e-10
      Fer4_7   1 rCigCgaCvaaC..........................pvkaieldeeenekgtekveidpekClgCga..CvavCPt 50 
                 +C+gC+aC++aC                          ++ ++++ e  +++g+ ++ i+ + C++C +  C ++CP+
  CTQ28308.1  38 SCVGCKACQVACsewndirddvghcvgvydnpadlsakSWTVMRFSET-EQNGKLEWLIRKDGCMHCAEpgCLKACPS 114
                 5******************************99999877888888886.667999**********************7 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 1.4e-08
      Fer4_7   2 CigCgaCvaaCpvkaieldeeenekgtekveidpekClgC.........gaCvavCPtga 52 
                 CigCg+C a Cp ++ +l++e+n            kC+ C          aCv++CPtga
  CTQ28308.1 133 CIGCGYCIAGCPFNVPRLNKEDNR---------VYKCTLCvdrvsvgqePACVKTCPTGA 183
                 *******************98544.........345555544444443368*******98 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0018
      Fer4_7   2 CigC......g...aCvaaCpvkaieldee 22 
                 C+ C      g   aCv++Cp++ai +  +
  CTQ28308.1 160 CTLCvdrvsvGqepACVKTCPTGAIHFGTK 189
                 666644443313448888888888887654 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2  10.4   5.4e-07   0.00051       2      50 ..      39     117 ..      38     118 .. 0.84
   2 !   26.8   9.2   4.5e-09   4.2e-06       1      51 []     132     184 ..     132     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.4e-07
      Fer4_9   2 CtgCgaCveaCpagvvvedaaerkarlraase...........................eaCigCga..CveaCpk.ga 50 
                 C+gC+aC+ aC  +  ++d+++  + +    +                           + C++C +  C++aCp+ ga
  CTQ28308.1  39 CVGCKACQVACSEWNDIRDDVGHCVGVYDNPAdlsakswtvmrfseteqngklewlirkDGCMHCAEpgCLKACPSaGA 117
                 ***********88888888888877776655578888888888888888899999****99**************9555 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 4.5e-09
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraaseeaCigCga.........CveaCpkgai 51 
                 +C+gCg+C++ Cp++v +  +  + +        +C+ C +         Cv+ Cp+gai
  CTQ28308.1 132 NCIGCGYCIAGCPFNVPRLNKEDNRVY-------KCTLCVDrvsvgqepaCVKTCPTGAI 184
                 6***************99888887777.......5**********************997 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.9   2.2e-05     0.021       3      21 ..      33      50 ..      31      85 .. 0.79
   2 !   28.4  10.6   1.4e-09   1.3e-06       2      56 .]      93     144 ..      92     144 .. 0.89
   3 !   21.1  11.1   2.7e-07   0.00026       4      56 .]     128     180 ..     125     180 .. 0.74
   4 ?    4.9   2.6      0.03        28      14      24 ..     174     184 ..     158     205 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.2e-05
     Fer4_10  3 vidddtCirCgkCvkaCPa 21
                 id ++C++C++C+ aC +
  CTQ28308.1 33 LIDVSSCVGCKACQVAC-S 50
                68999************.3 PP

  == domain 2  score: 28.4 bits;  conditional E-value: 1.4e-09
     Fer4_10   2 vvidddtCirCg..kCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 + i +d C++C+   C kaCP+      +  ++  ++ v+   e+C+gcg+C++ CP
  CTQ28308.1  93 WLIRKDGCMHCAepGCLKACPS-----AGAIIQYANGIVDFQQENCIGCGYCIAGCP 144
                 678899******888*******.....777777788888889**************9 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 2.7e-07
     Fer4_10   4 idddtCirCgkCvkaCPadltsvgakgeaseeeavrkkvekCtgc......g...aCveaCP 56 
                 ++++ Ci+Cg C + CP+            + ++++  v+kCt c      g   aCv+ CP
  CTQ28308.1 128 FQQENCIGCGYCIAGCPF---------NVPRLNKEDNRVYKCTLCvdrvsvGqepACVKTCP 180
                 67899*************.........3333334444568899997777773567******9 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.03
     Fer4_10  14 kCvkaCPadlt 24 
                 +Cvk CP+ + 
  CTQ28308.1 174 ACVKTCPTGAI 184
                 57777777443 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   2.1   1.4e-05     0.013       4      21 ..      34      51 ..      33      54 .. 0.93
   2 !    7.6   3.2    0.0044       4.2       9      24 .]     100     118 ..      95     118 .. 0.81
   3 !   23.4   3.0   4.7e-08   4.4e-05       1      23 [.     125     147 ..     125     148 .. 0.92
   4 ?   -1.6   0.2       3.5   3.3e+03      12      16 ..     160     164 ..     159     169 .. 0.68
   5 !   10.1   0.3   0.00072      0.68      14      24 .]     174     184 ..     170     184 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
      Fer4_6  4 idpdkCigCgdCvrvCPe 21
                id ++C+gC +C ++C e
  CTQ28308.1 34 IDVSSCVGCKACQVACSE 51
                899*************86 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0044
      Fer4_6   9 CigCgd..CvrvCP.egai 24 
                 C +C +  C ++CP +gai
  CTQ28308.1 100 CMHCAEpgCLKACPsAGAI 118
                 888966799*****66887 PP

  == domain 3  score: 23.4 bits;  conditional E-value: 4.7e-08
      Fer4_6   1 vveidpdkCigCgdCvrvCPega 23 
                 +v +++++CigCg C++ CP+++
  CTQ28308.1 125 IVDFQQENCIGCGYCIAGCPFNV 147
                 5789****************986 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 3.5
      Fer4_6  12 CgdCv 16 
                 C  Cv
  CTQ28308.1 160 CTLCV 164
                 55555 PP

  == domain 5  score: 10.1 bits;  conditional E-value: 0.00072
      Fer4_6  14 dCvrvCPegai 24 
                 +Cv+ CP+gai
  CTQ28308.1 174 ACVKTCPTGAI 184
                 5*********8 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   3.6   2.9e-05     0.028       3      18 ..      34      49 ..      32      50 .. 0.95
   2 ?   -0.6   0.3       1.5   1.4e+03      10      15 ..      99     104 ..      95     105 .. 0.63
   3 ?    1.0   0.2      0.44   4.1e+02      14      19 ..     108     113 ..     107     115 .. 0.89
   4 !   23.4   3.0   3.9e-08   3.7e-05       4      22 ..     129     147 ..     126     149 .. 0.88
   5 ?   -1.1   0.2       2.1   1.9e+03       7      11 ..     159     163 ..     158     165 .. 0.59
   6 !   12.7   0.4     9e-05     0.085      13      23 ..     174     184 ..     174     185 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.9e-05
                EETTTSSS-THHHHHS CS
        Fer4  3 ideekCigCGaCvevC 18
                id + C+gC+aC  +C
  CTQ28308.1 34 IDVSSCVGCKACQVAC 49
                899************* PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.5
                 S-THHH CS
        Fer4  10 gCGaCv 15 
                 gC+ C+
  CTQ28308.1  99 GCMHCA 104
                 566665 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.44
                 HHHHST CS
        Fer4  14 CvevCP 19 
                 C ++CP
  CTQ28308.1 108 CLKACP 113
                 99**** PP

  == domain 4  score: 23.4 bits;  conditional E-value: 3.9e-08
                 ETTTSSS-THHHHHSTTTE CS
        Fer4   4 deekCigCGaCvevCPvgA 22 
                  +e CigCG+C+  CP+++
  CTQ28308.1 129 QQENCIGCGYCIAGCPFNV 147
                 5799*************97 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 2.1
                 TSSS- CS
        Fer4   7 kCigC 11 
                 kC+ C
  CTQ28308.1 159 KCTLC 163
                 55555 PP

  == domain 6  score: 12.7 bits;  conditional E-value: 9e-05
                 HHHHHSTTTEE CS
        Fer4  13 aCvevCPvgAI 23 
                 aCv+ CP+gAI
  CTQ28308.1 174 ACVKTCPTGAI 184
                 7*********9 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.5   1.2e-05     0.011       5      20 ..      34      49 ..      31      51 .. 0.90
   2 !    7.8   1.5     0.004       3.8       8      21 ..      98     113 ..      93     114 .. 0.82
   3 !   16.2   1.2   8.3e-06    0.0079       7      21 ..     130     144 ..     125     145 .. 0.88
   4 ?    5.6   1.5     0.021        20       9      22 .]     159     181 ..     150     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-05
      Fer4_2  5 vdtdrCigCgaCvsaC 20
                +d  +C+gC+aC+ aC
  CTQ28308.1 34 IDVSSCVGCKACQVAC 49
                8999************ PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.004
      Fer4_2   8 drCigC...gaCvsaCP 21 
                 d C++C   g C++aCP
  CTQ28308.1  98 DGCMHCaepG-CLKACP 113
                 67****7655.****** PP

  == domain 3  score: 16.2 bits;  conditional E-value: 8.3e-06
      Fer4_2   7 tdrCigCgaCvsaCP 21 
                  ++CigCg C+  CP
  CTQ28308.1 130 QENCIGCGYCIAGCP 144
                 589*******999** PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.021
      Fer4_2   9 rCigC......g...aCvsaCPa 22 
                 +C+ C      g   aCv+ CP+
  CTQ28308.1 159 KCTLCvdrvsvGqepACVKTCPT 181
                 788888866554778*******7 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   3.2   0.00031      0.29       3      20 ..      34      51 ..      31      64 .. 0.88
   2 !   26.9   7.8   4.2e-09     4e-06       3      53 ..      95     145 ..      94     148 .. 0.90
   3 ?    0.8   1.8      0.58   5.5e+02      46      57 ..     174     184 ..     151     186 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00031
     Fer4_21  3 idedkCigCgkCliaCed 20
                id ++C+gC+ C +aC++
  CTQ28308.1 34 IDVSSCVGCKACQVACSE 51
                89999***********86 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 4.2e-09
     Fer4_21   3 idedkCigCgk..CliaCedtshqaieidaktvlkvvedeCvGCnlCssvCPv 53 
                 i +d C++C +  Cl+aC+  s  ai   a+ ++  ++++C+GC  C++ CP 
  CTQ28308.1  95 IRKDGCMHCAEpgCLKACP--SAGAIIQYANGIVDFQQENCIGCGYCIAGCPF 145
                 8899*****9666******..6788888899999******************6 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.58
     Fer4_21  46 lCssvCPvedci 57 
                  C++ CP+ ++i
  CTQ28308.1 174 ACVKTCPT-GAI 184
                 48888885.777 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.3   0.00023      0.22      41      57 ..      34      50 ..       5      54 .. 0.75
   2 !    7.8   0.2     0.005       4.7       2      14 ..     100     114 ..      59     126 .. 0.75
   3 !   14.6   3.6   3.9e-05     0.037       1      29 [.     132     160 ..     132     172 .. 0.83
   4 ?    2.9   0.5      0.17   1.6e+02       7      26 ..     174     193 ..     158     212 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00023
     Fer4_17 41 ekaslCieCgeCerkCP 57
                  +s+C++C+ C+ +C 
  CTQ28308.1 34 IDVSSCVGCKACQVACS 50
                4789************6 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.005
     Fer4_17   2 CiqCgy..ClpeCps 14 
                 C++C+   Cl++Cps
  CTQ28308.1 100 CMHCAEpgCLKACPS 114
                 667765557777766 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 3.9e-05
     Fer4_17   1 rCiqCgyClpeCpsyeaydnepkkllraa 29 
                 +Ci+CgyC++ Cp++  + n++++ +++ 
  CTQ28308.1 132 NCIGCGYCIAGCPFNVPRLNKEDNRVYKC 160
                 6*************999888887766665 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.17
     Fer4_17   7 yClpeCpsyeaydnepkkll 26 
                 +C++ Cp+++++   +k++l
  CTQ28308.1 174 ACVKTCPTGAIHFGTKKEML 193
                 48889999888665555544 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   2.2   0.00016      0.15       3      15 ..      38      50 ..      37      60 .. 0.91
   2 ?    7.0   1.5      0.01       9.5       2      16 ..      98     114 ..      96     121 .. 0.88
   3 !   18.7   2.9   1.8e-06    0.0017       1      17 []     130     146 ..     130     146 .. 0.94
   4 ?    4.8   3.4     0.053        50       6      17 .]     171     182 ..     158     182 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00016
      Fer4_4  3 rCigCgsCvaaCP 15
                +C+gC++C  aC+
  CTQ28308.1 38 SCVGCKACQVACS 50
                7***********7 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.01
      Fer4_4   2 erCigCgs..CvaaCPq 16 
                 + C +C    C  aCP+
  CTQ28308.1  98 DGCMHCAEpgCLKACPS 114
                 78*****888******5 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 1.8e-06
      Fer4_4   1 qerCigCgsCvaaCPqg 17 
                 qe+CigCg C+a CP++
  CTQ28308.1 130 QENCIGCGYCIAGCPFN 146
                 79*************86 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.053
      Fer4_4   6 gCgsCvaaCPqg 17 
                 + ++Cv +CP+g
  CTQ28308.1 171 QEPACVKTCPTG 182
                 6789******86 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.8     0.016        15      49      64 ..      34      49 ..       7      53 .. 0.69
   2 ?    0.2  13.6       1.6   1.5e+03       2      62 ..      39     105 ..      38     113 .. 0.74
   3 ?    4.2   2.5      0.09        85       2      20 ..     100     121 ..      99     131 .. 0.77
   4 !   11.1   2.8   0.00063      0.59      50      67 .]     129     146 ..     121     146 .. 0.81
   5 ?    0.7   0.1       1.1   1.1e+03      50      62 ..     153     165 ..     146     166 .. 0.74
   6 !   13.0   0.0   0.00016      0.15       7      30 ..     174     198 ..     170     215 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.016
     Fer4_16 49 kkqeaitgCdiCqdvC 64
                     + gC++Cq +C
  CTQ28308.1 34 IDVSSCVGCKACQVAC 49
                4556677777777777 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.6
     Fer4_16   2 CgtCgkCaevCPt.naikekkekei...earecisyntaekkdlaedeekckkqeai..tgCdiCqd 62 
                 C++C++C  +C + n i+ +   ++   +++++ s++     +++e+e++ k ++ i   gC  C++
  CTQ28308.1  39 CVGCKACQVACSEwNDIRDDVGHCVgvyDNPADLSAKSWTVMRFSETEQNGKLEWLIrkDGCMHCAE 105
                 ************9677999955543222888888887888888888888888666667777777764 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.09
     Fer4_16   2 CgtCgk..CaevCPt.naikek 20 
                 C  C +  C+++CP+ +ai + 
  CTQ28308.1 100 CMHCAEpgCLKACPSaGAIIQY 121
                 99999999******85666655 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 0.00063
     Fer4_16  50 kqeaitgCdiCqdvCPan 67 
                 +qe+++gC+ C + CP+n
  CTQ28308.1 129 QQENCIGCGYCIAGCPFN 146
                 578899999999999988 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 1.1
     Fer4_16  50 kqeaitgCdiCqd 62 
                 + ++++ C  C+d
  CTQ28308.1 153 EDNRVYKCTLCVD 165
                 4578899999986 PP

  == domain 6  score: 13.0 bits;  conditional E-value: 0.00016
     Fer4_16   7 kCaevCPtnaikekkeke.iearec 30 
                 +C+++CPt+ai+  ++ke +e  e+
  CTQ28308.1 174 ACVKTCPTGAIHFGTKKEmLEVAEE 198
                 7***********8844440444443 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   4.8     0.024        22       1      11 [.      39      49 ..      39      53 .. 0.93
   2 !    9.3   5.8    0.0026       2.4       1      15 []     100     117 ..     100     117 .. 0.79
   3 !    9.6   4.1     0.002       1.9       1      14 [.     133     146 ..     133     147 .. 0.94
   4 !   12.0   3.3   0.00035      0.33       1      15 []     160     183 ..     160     183 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.024
      Fer4_3  1 CtgCgaCvevC 11
                C+gC aC ++C
  CTQ28308.1 39 CVGCKACQVAC 49
                *********** PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0026
      Fer4_3   1 CtgCga..CvevCPv.gA 15 
                 C++C    C+++CP+ gA
  CTQ28308.1 100 CMHCAEpgCLKACPSaGA 117
                 ****6345******8666 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.002
      Fer4_3   1 CtgCgaCvevCPvg 14 
                 C+gCg C   CP +
  CTQ28308.1 133 CIGCGYCIAGCPFN 146
                 ************86 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 0.00035
      Fer4_3   1 CtgCg.........aCvevCPvgA 15 
                 Ct C          aCv+ CP+gA
  CTQ28308.1 160 CTLCVdrvsvgqepACVKTCPTGA 183
                 999955788999999********9 PP

>> GP120  Envelope glycoprotein GP120
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.3   1.7e-05     0.016     114     197 ..     113     194 ..     102     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.7e-05
                 EEETTTTEEEE................EEEXSSSXXXSEEEEEEEEEXTTSXEEEEEEXXSS..XXXTXSXBEEEEEEE--SEEEE CS
       GP120 114 ssaariineksnci..enntcaglgyeeikqcefniksleqdkkkeykdtykleivvidndtagtsylrscntsvikeacdkvsfe 197
                  sa+ ii+  + ++  +++ c g gy  i  c fn+  l+++ ++ yk t  ++ v + ++    + +++c t  i+   +k   e
  CTQ28308.1 113 PSAGAIIQYANGIVdfQQENCIGCGYC-IAGCPFNVPRLNKEDNRVYKCTLCVDRVSVGQEP---ACVKTCPTGAIHFGTKKEMLE 194
                 57888888776665224678******5.99****************************9998...457889998888777776655 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.8    0.0014       1.4      50      81 ..      28      59 ..      10      68 .. 0.81
   2 ?    3.6   0.4     0.077        73      84     113 ..      99     130 ..      94     131 .. 0.83
   3 ?   13.1   3.7   8.7e-05     0.082      58      94 ..     130     166 ..     126     172 .. 0.91
   4 ?    1.4   0.2      0.37   3.5e+02      66      74 ..     174     182 ..     171     197 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0014
     Fer4_18 50 keerkekgagdcidcescvkvcPtgidirkGl 81
                 e  k  +++ c+ c++c   c    dir+ +
  CTQ28308.1 28 AEVAKLIDVSSCVGCKACQVACSEWNDIRDDV 59
                45555667899******************965 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.077
     Fer4_18  84 eciscll..cidacdkvmeklgkpkgliryss 113
                  c+ c++  c+ ac +    +++ +g++++++
  CTQ28308.1  99 GCMHCAEpgCLKACPSAGAIIQYANGIVDFQQ 130
                 48888866699999999999999999999987 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 8.7e-05
     Fer4_18  58 agdcidcescvkvcPtgidirkGlqleciscllcida 94 
                 + +ci c++c++ cP ++   +       +c+lc+d 
  CTQ28308.1 130 QENCIGCGYCIAGCPFNVPRLNKEDNRVYKCTLCVDR 166
                 679****************999999**********96 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.37
     Fer4_18  66 scvkvcPtg 74 
                 +cvk cPtg
  CTQ28308.1 174 ACVKTCPTG 182
                 699999998 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.2      0.31   2.9e+02      19      43 ..      34      56 ..      21      63 .. 0.76
   2 ?   12.8   0.6   8.1e-05     0.076      22      49 ..      98     125 ..      79     132 .. 0.83
   3 ?    2.7   1.2      0.11     1e+02      22      40 ..     131     147 ..     126     151 .. 0.86
   4 ?    1.3   2.0      0.29   2.7e+02      27      39 ..     170     182 ..     149     202 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.31
                HHHTT----TT-HHHHCSTT---HH CS
     Fer4_20 19 eeAsRClqCkkapcvkgCPveidip 43
                 + s C+ C  + c+ +C   +di+
  CTQ28308.1 34 IDVSSCVGC--KACQVACSEWNDIR 56
                566789999..78999999988886 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 8.1e-05
                 TT----TT-HHHHCSTT---HHHHHHHH CS
     Fer4_20  22 sRClqCkkapcvkgCPveidipefikki 49 
                 + C++C+++ c k+CP    i ++ + i
  CTQ28308.1  98 DGCMHCAEPGCLKACPSAGAIIQYANGI 125
                 56*****************999998766 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.11
                 TT----TT-HHHHCSTT-- CS
     Fer4_20  22 sRClqCkkapcvkgCPvei 40 
                 + C+ C   +c++gCP ++
  CTQ28308.1 131 ENCIGC--GYCIAGCPFNV 147
                 679***..89******986 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.29
                 -TT-HHHHCSTT- CS
     Fer4_20  27 CkkapcvkgCPve 39 
                  +++ cvk+CP+ 
  CTQ28308.1 170 GQEPACVKTCPTG 182
                 35789******86 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.4   0.00082      0.77      73      93 ..      30      50 ..      18      52 .. 0.82
   2 ?   -0.2   1.1         2   1.9e+03      78      93 ..      96     113 ..      68     116 .. 0.60
   3 ?   12.4   2.1   0.00023      0.21      75      95 ..     126     146 ..     116     147 .. 0.83
   4 ?   -0.9   0.0       3.2   3.1e+03       7      18 ..     174     185 ..     169     210 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00082
     Fer4_22 73 fkekfgesgCvGCgRCieacp 93
                +++ ++ s+CvGC  C+ ac 
  CTQ28308.1 30 VAKLIDVSSCVGCKACQVACS 50
                55667999***********97 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 2
     Fer4_22  78 gesgCvGCgR..Cieacp 93 
                  + gC+ C    C +acp
  CTQ28308.1  96 RKDGCMHCAEpgCLKACP 113
                 555566665333666665 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00023
     Fer4_22  75 ekfgesgCvGCgRCieacpvk 95 
                   f+++ C+GCg Ci+ cp +
  CTQ28308.1 126 VDFQQENCIGCGYCIAGCPFN 146
                 568999************976 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 3.2
     Fer4_22   7 aCtlvCptCsCf 18 
                 aC  +Cpt   +
  CTQ28308.1 174 ACVKTCPTGAIH 185
                 588888886543 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.9   0.00022      0.21      48      62 ..      36      50 ..      13      55 .. 0.70
   2 ?    6.9  13.4    0.0093       8.8       2      63 ..      36     114 ..      35     115 .. 0.51
   3 ?    0.5   3.7      0.88   8.3e+02       4      18 ..      99     115 ..      96     121 .. 0.76
   4 ?    4.2  12.6     0.062        59       3      17 ..     131     145 ..     129     183 .. 0.69
   5 ?    1.8   1.7      0.35   3.3e+02      50      64 ..     159     182 ..     156     214 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00022
      Fer4_8 48 lwsCttcgaCtevCp 62
                + sC++c+aC+++C 
  CTQ28308.1 36 VSSCVGCKACQVACS 50
                667777777777775 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0093
      Fer4_8   2 lekCieCgaCqsaCp......................vlrrtkkhlldargeaaedvqeeqvleeeealwsCttcga..CtevCpv 63 
                 +++C++C aCq aC                       +++++  ++++  +++   + e+         + C++c +  C ++Cp 
  CTQ28308.1  36 VSSCVGCKACQVACSewndirddvghcvgvydnpadlSAKSWTVMRFSETEQNG--KLEWLI-----RKDGCMHCAEpgCLKACPS 114
                 789***********7333333333333332222233233333322222222222..222332.....4588888887889999995 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.88
      Fer4_8   4 kCieCg..aCqsaCpvl 18 
                  C++C    C +aCp++
  CTQ28308.1  99 GCMHCAepGCLKACPSA 115
                 48888656788889875 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.062
      Fer4_8   3 ekCieCgaCqsaCpv 17 
                 e+Ci+Cg+C + Cp+
  CTQ28308.1 131 ENCIGCGYCIAGCPF 145
                 89***********94 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.35
      Fer4_8  50 sCttcga.........CtevCpvg 64 
                 +Ct c           C++ Cp+g
  CTQ28308.1 159 KCTLCVDrvsvgqepaCVKTCPTG 182
                 555554444444455566666654 PP

>> APC_u14  Unstructured region on APC between SAMP and APC_crr
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00019      0.18      18      50 ..       4      36 ..       1      46 [. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00019
     APC_u14 18 sqqdlekkkPtsPvkPmPqsseyraRlrknaes 50
                ++qd+ k+  t P+ P P + +y+a + k  + 
  CTQ28308.1  4 ETQDIIKRSATNPITPAPRARDYKAEVAKLIDV 36
                579999*********************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2271.60
//
Query:       CTQ28309.1  [L=803]
Description: Formate dehydrogenase, nitrate-inducible, major subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-25   88.5   0.0    1.2e-21   77.3   0.0    2.2  2  Molybdopterin    Molybdopterin oxidoreductase
    1.9e-16   60.1   0.0    6.9e-16   58.2   0.0    2.0  1  Molydop_binding  Molydopterin dinucleotide binding domain


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   1.3e-25   1.2e-21     103     379 ..       2     377 ..       1     381 [. 0.82
   2 !    9.0   0.0   6.5e-05      0.59     387     429 ..     402     444 ..     400     447 .. 0.93

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 1.3e-25
                    SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC.-EEEEECSSB-HCGGGCSEEEEEHTTTHHHHHHHHHHHHHHCCCCTCHHHHHHEEC CS
  Molybdopterin 103 snpledlensdliilwGsNvreerpilnarirkaalkkk.akvivigpryaellkfadewlaikpgtdaalalamghvilqelkvdkeflrkytyg 197
                    +n  +d+ n+ +++++G N +e +p+   r  ++a++++ a +iv++pr++ +++ ad + +i+ gtd  ++ +   ++++++k +       +y+
     CTQ28309.1   2 TNHWVDIKNANVVVVMGGNAAEAHPVG-FRWAMEAKNNNdATLIVVDPRFTRTASVADIYAPIRSGTDITFLSGVLLYLIENNKINA------EYV 90 
                    67788**********************.888888888889************999****************99999***********......9** PP

                    HHHCCCCCCCEECCS..............................................................HHHHHHCCHHHHHHHHHHH CS
  Molybdopterin 198 keetdmpllvtleee..............................................................tgkkkevvariarelarna 231
                    k +t+  llv  +                                                                 g  k+   ++ + la   
     CTQ28309.1  91 KHYTNASLLVRDDFAfeeglfsgydaekrqydksswnyqfdengyakrdetlshprcvwnllkqhvsrytpevveniCGTPKADFLKVCDVLASTS 186
                    **********99988999*******************************************************55555555555555566666666 PP

                    HHHTSSEEEEECHHHHTSTTHHHHHHHHHHHHHHCTHCSSTTCEEEEESSCTTHHHCHHHHTCCTTCCCCCCCTT..................... CS
  Molybdopterin 232 aktagksmiivGaglnhrqdgdaiyravinLallvgnvgqpgGgwahlnGqlilagaaekvgalpvllsvkslke..................... 306
                    a+ ++   +++  g ++++ g++++r+++++ ll+gn+g  gGg+++l+G  +++g          l+ + +l++                     
     CTQ28309.1 187 AADRT-TTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSTSLPGYLTLPSdkqtdlqsylsantpkatlpe 281
                    66666.78999***************************************7777775444444433444444444666666666666666667776 PP

                    ..........................HHHHHCCCTTTCSTS.S--ECGGCHHHHHHTTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEESC CS
  Molybdopterin 307 ..........................ekikfaaeqpgnlgn.fprnlfversnllkssgkkvlyllgnnpevdhadenevekalekldlvvvldgr 375
                                              e     +++ + l++    +++++  n++ ++++  +   g np+ + +d+n+v++ l kl+  vv+d  
     CTQ28309.1 282 qvnywsnypkffvslmksfygeaaqkE----NDWGFEWLPKwDQAYDVIKYFNMMDNGNVTGYICQGFNPVASFPDKNKVVRSLSKLKYMVVIDPL 373
                    666666666888888876665533321....2222222222134577888888888888888888888**************************99 PP

                    SSHH CS
  Molybdopterin 376 ltst 379
                    +t+t
     CTQ28309.1 374 VTET 377
                    9887 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 6.5e-05
                    EEBE-CCGSEEEEE-TTSEEEEEEESSS-STT-BEHHHHHHHH CS
  Molybdopterin 387 LPaatwyEkedlytndegrfqhlkqavsppgeaksdwkIlkaL 429
                    LP++++ E+++   n+ +  q   +  ++pgea++d +Il  +
     CTQ28309.1 402 LPSTCFAEEDGSIANSGRWLQWHWKGQDAPGEARNDGEILAGI 444
                    9****************99999999**************9866 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   7.8e-20   6.9e-16       4     110 ..     681     796 ..     678     797 .. 0.90

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 7.8e-20
                      EEE-BTTBSTTTTTCGCCHHHHCSSS-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-T........TEEEEESSHCC....... CS
  Molydop_binding   4 itgrsldqlhsqtrtrpvlrlakpepevveinpedAaalGikdGdlVevesrrGsvevrakvtervrp........Gvvfmpfgwwe..agekg 87 
                      +t+r  +++h++t++    + a+pe+ +vei++  A+  Gi++Gd+V+v+s+rG +++ a+vt r+r          +v +p +w+     +kg
       CTQ28309.1 681 TTYRLTEHFHTWTKHALLNSIAQPEQ-FVEISEGLAKSKGIANGDWVKVSSKRGFIRAVAVVTRRLRTlnvngqqvETVGIPLHWGFegVARKG 773
                      899**********************9.************************************9998644443333788889999889999*** PP

                      S-GHCTS--SCSTTT--CSTT-E CS
  Molydop_binding  88 gnaNaltddatdplsgtpefksv 110
                        aN+lt+   d  s+tpe+k++
       CTQ28309.1 774 YIANTLTPNVGDSNSQTPEYKAF 796
                      *********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 5390.82
//
Query:       CTQ28310.1  [L=195]
Description: Formate dehydrogenase, nitrate inducible, alpha subunit, selenocysteine-containing [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-20   72.8   0.2    3.9e-20   71.6   0.1    1.7  2  Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
    1.5e-06   27.5   0.1    1.8e-06   27.2   0.1    1.2  1  Molybdopterin   Molybdopterin oxidoreductase
  ------ inclusion threshold ------
      0.031   14.1   3.3      0.084   12.8   3.3    1.8  1  TAT_signal      TAT (twin-arginine translocation) pathway sig
       0.11   12.7   0.7       0.53   10.6   0.5    2.1  3  Rieske_3        Rieske 3Fe-4S


Domain annotation for each model (and alignments):
>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.1   8.7e-24   3.9e-20       2      55 .]      44     104 ..      43     104 .. 0.96
   2 ?   -2.9   0.0       1.6     7e+03      38      44 ..     160     166 ..     145     169 .. 0.70

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 8.7e-24
                     EEEEEE-SSBTT--EEEEEE.......ETTEEEEEEE-TTSTTTTT---HHHHTCHHCCCB CS
  Molybdop_Fe4S4   2 kvvktaCpyCgvgCglevhv.......kdgkivkvegdpdhpvnegrlCvKGrtllervyn 55 
                     k+++++C+yC+vgCgl++++       +++ i+++egdpdhpv++g lC+KG+ ll++v++
      CTQ28310.1  44 KEIRNTCTYCSVGCGLLMYSlgdgaknAKEAIYHIEGDPDHPVSRGALCPKGAGLLDYVHS 104
                     7899**********************999*****************************985 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.6
                     TTT---H CS
  Molybdop_Fe4S4  38 negrlCv 44 
                     + g+lC+
      CTQ28310.1 160 STGMLCA 166
                     3488885 PP

>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1     4e-10   1.8e-06       1      36 [.     107     140 ..     107     191 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 4e-10
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHH CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkyt 36 
                    Rl+yP +R  a g +k++r+sWdeA++ ia+ +k+ 
     CTQ28310.1 107 RLRYPQYR--APGSDKWQRISWDEAFNRIARLMKAD 140
                    9*******..*********************99973 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.3   1.9e-05     0.084       1      24 [.       2      25 ..       2      27 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.9e-05
  TAT_signal  1 klSRRdFLKgsAAaaAAaalggca 24
                ++SRR F K  A+++A++++++++
  CTQ28310.1  2 DVSRRKFFKICAGGMAGTTAAALG 25
                58*******************987 PP

>> Rieske_3  Rieske 3Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   0.00012      0.53       1      16 [.      50      65 ..      50      79 .. 0.81
   2 ?   -1.7   0.0      0.82   3.7e+03      57      91 ..      70     104 ..      67     107 .. 0.72
   3 ?   -1.5   0.0      0.71   3.2e+03      56      76 ..     138     158 ..     123     174 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00012
                -SSBTT--EEEEEEEE CS
    Rieske_3  1 CdyCivgCgYkvYkWp 16
                C yC vgCg  +Y+  
  CTQ28310.1 50 CTYCSVGCGLLMYSLG 65
                9*********999865 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.82
                 TTEEEEEEEEE-TT-TTTTT---TTGGGTTTTS-B CS
    Rieske_3  57 dgkdvnvvivpdkdcvvnkGdssirGgrlaeklys 91 
                 ++k+    i  d d  v +G    +G+ l + ++s
  CTQ28310.1  70 NAKEAIYHIEGDPDHPVSRGALCPKGAGLLDYVHS 104
                 56666667888889999999988888877666665 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.71
                 ETTEEEEEEEEE-TT-TTTTT CS
    Rieske_3  56 kdgkdvnvvivpdkdcvvnkG 76 
                 k  +d n + + ++ ++vn+ 
  CTQ28310.1 138 KADRDANFIEKNEQGVTVNRW 158
                 556667777777777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1558.14
//
Query:       CTQ28311.1  [L=292]
Description: metabolite and drug efflux pump [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-13   49.0  42.8    2.5e-07   30.9  20.8    2.1  2  EamA           EamA-like transporter family
  ------ inclusion threshold ------
        1.5    7.8  19.8        2.4    7.1  19.8    1.5  1  PHO4           Phosphate transporter family
        6.8    6.5  28.2      0.095   12.6   9.5    2.3  2  7TMR-DISM_7TM  7TM diverse intracellular signalling


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4  14.0   4.3e-09   2.6e-05       6     135 ..       9     136 ..       4     138 .. 0.90
   2 !   30.9  20.8   4.2e-11   2.5e-07       3     134 ..     158     285 ..     156     288 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 4.3e-09
        EamA   6 lallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvf 104
                 + ++a ++w+++  l++ +++ +  +  +++ + ++g+ll+++  +   ++  ++++ +l+  +l + + ++  l + ya ++ +a +++++++l P +
  CTQ28311.1   9 IGFAAIILWSTMVGLIRGVSEGLGAVGGAAMIYSLSGLLLIFTVGFPNLRQ--IPRRYLLAGSVLFVSYEICLALSLGYAASRQQAIEVGMVNYLWPSL 105
                 578999********************9999999999999977777766666..8999999988888888888889************************ PP

        EamA 105 tlilsvlllgekltlkqllgivlillGvlli 135
                 t+++++l+ g+k +++ + g++l+llGv  +
  CTQ28311.1 106 TILFAILFNGQKSGWLVIPGLILALLGVGWV 136
                 ***************************9877 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 4.2e-11
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsle 101
                  +lla+++a++wa+y +++ +  r  + +tl+++   + ++ l +  l +++++  +s+  ++ l+ ++ ++  la+ +++ ++ ++++s  + +++++
  CTQ28311.1 158 SYLLAFVGAFIWAAYCTVTAKYARGKNAITLFVL---LTALTLWLKFLASDQPPMLFSWPVVIKLMTVS-VALGLAYAAWNVGILHGNVSLLAAASYFT 252
                 689****************999999999999863...33344433333344444366665555544444.789999*********************** PP

        EamA 102 PvftlilsvlllgekltlkqllgivlillGvll 134
                 Pv++  l+++ll  +l+++ + g++++ lG ll
  CTQ28311.1 253 PVLSSALAAILLSATLSWSFWQGAGMVCLGSLL 285
                 ******************************998 PP

>> PHO4  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  19.8   0.00041       2.4      93     251 ..     126     288 ..       6     291 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00041
        PHO4  93 lvGaliGaalaaeggeavkwkklvkivlswvlsPllggiiaallfllvkrlilvkeklknalralpvlvlvtiailalsilfkgeskkddeeteklfkf 191
                 l+ al+G++++++g ++++ ++++  v+s  ls ll+++ a++ +    ++    +k+ ++++a+ ++vl+t+++l l +l +        + + lf++
  CTQ28311.1 126 LILALLGVGWVLGGEHGLQPDEIISNVISSPLSYLLAFVGAFIWAAYCTVT----AKYARGKNAITLFVLLTALTLWLKFLASD-------QPPMLFSW 213
                 7889*******98889**999999988888899999998888888888877....67888999999888888877777666655.......78899*** PP

        PHO4 192 lqvvsaalvsfahGanDvanaiGpllaalisiykask.evpl...............wvlllgglaialGlllgGk 251
                  +v+  ++vs+a G   +a  +G+l   + s++ a++  +p+               w +  g+ +++lG ll ++
  CTQ28311.1 214 PVVIKLMTVSVALGLAYAAWNVGILHGNV-SLLAAASyFTPVlssalaaillsatlsWSFWQGAGMVCLGSLLCWY 288
                 *************************5544.4444333344543444444455555567778888889999998887 PP

>> 7TMR-DISM_7TM  7TM diverse intracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   9.5   1.6e-05     0.095      74     193 ..      41     161 ..      36     171 .. 0.67
   2 ?   -1.2  13.7      0.27   1.6e+03      71     183 ..     160     274 ..     140     288 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
  7TMR-DISM_7TM  74 llllilfllFarsflelkkkp.rllklllllavllsllllllpllpyteslslaqllallvillllligikaw.rkgnkparyfliawlllligvl 167
                    + l++l+l+F+  f +l++ p r+l +  +l+v + ++l+l +l  y  s + a+ + ++ +l+  l+++ a+ ++g+k+ ++ + +++l l+gv 
     CTQ28311.1  41 YSLSGLLLIFTVGFPNLRQIPrRYLLAGSVLFVSYEICLAL-SLG-YAASRQQAIEVGMVNYLWPSLTILFAIlFNGQKSGWLVIPGLILALLGVG 134
                    445558888*****999774435555555566655555555.555.5555555555555555555555555555********************** PP

  7TMR-DISM_7TM 168 idilsllgllpsnffte.yllqigvll 193
                    + +    gl p  ++++  ++++++ll
     CTQ28311.1 135 WVLGGEHGLQPDEIISNvISSPLSYLL 161
                    *66555557777788887888777665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.27
  7TMR-DISM_7TM  71 ltlllllilfllFarsflelkkkprllklllllavllsllllllpll...pyteslslaqllallvillllligikawrkgnkparyfliawllll 163
                    l+ ++++++ ++++    +    +   k  + l+vll++l l l +l     ++ +s+  ++ l+++ ++l ++++aw  g    +  l+a + ++
     CTQ28311.1 160 LLAFVGAFIWAAYCTVTAK----YARGKNAITLFVLLTALTLWLKFLasdQPPMLFSWPVVIKLMTVSVALGLAYAAWNVGILHGNVSLLAAASYF 251
                    2222222222223333222....2222223333333333333333332223333333333777777777778888888777777777777777777 PP

  7TMR-DISM_7TM 164 igvlidilsllg...llpsnfft 183
                    + vl  +l+++    +l+++f+ 
     CTQ28311.1 252 TPVLSSALAAILlsaTLSWSFWQ 274
                    66666554432222355555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2280.61
//
Query:       CTQ28312.1  [L=257]
Description: 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-52  177.0   0.3    6.8e-52  176.4   0.3    1.3  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    7.7e-51  172.3   0.0    9.6e-51  172.0   0.0    1.1  1  adh_short     short chain dehydrogenase
    4.1e-07   30.1   0.5    7.9e-07   29.1   0.5    1.6  1  KR            KR domain
  ------ inclusion threshold ------
      0.029   13.8   0.1       0.29   10.6   0.0    2.1  2  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.4   0.3   1.5e-55   6.8e-52       1     232 [.      12     254 ..      12     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 176.4 bits;  conditional E-value: 1.5e-55
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Gaa+gIGr++A+++a+eGa ++l d++   ++ +++la++ g  v  le+D +  e+ e+++++ v++fg++D+l+nn+g +     pf+e + +++
    CTQ28312.1  12 GAAQGIGRQTAEQAAAEGAALLLIDRSSYVHELAATLAQS-GCLVlaLEADLEAWESTEQAFAAGVAHFGRIDVLINNVGGTIW-ARPFAEYQPDQI 106
                   9*****************************8888888876.544335************************************9.9*********** PP

                   HHHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BH.....CTGGGGSTT. CS
  adh_short_C2  96 draldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpik.....Tlaasgikg. 184
                   ++ +  +l  ++  ++aalp ++k+g gsivn+ssv+   +  n   y+aaK++++altr++A+e+   giR+Nav+pg ++     T+ +++ ++ 
    CTQ28312.1 107 EKEIRRSLFPTLWGCRAALPwMLKQGkGSIVNISSVAT--AGVNRVPYSAAKGGVNALTRSIAMEYSGSGIRINAVAPGGTEapprlTPRNEEQPSe 201
                   ********************7777779*********55..677788*********************************998222223444444333 PP

                   .....HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 185 .....fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                         +++ ++  a++ l+r gt  e a+a+lfLasdeasyitG tl v gG
    CTQ28312.1 202 qekawYQQVVDQTVASSLLHRYGTLAEQANAILFLASDEASYITGVTLPVAGG 254
                   333334457788888999********************************999 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.0   0.0   2.1e-54   9.6e-51       1     185 [.       6     188 ..       6     199 .. 0.95

  Alignments for each domain:
  == domain 1  score: 172.0 bits;  conditional E-value: 2.1e-54
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfselse 98 
                 kvv++tGa++GIGr++a++ a+eGa ++++drs + ++e+a+ l + g  +la+++D++ +e++e+++++ v+++g++dvL+nN+G   + +pf+e++ 
  CTQ28312.1   6 KVVVITGAAQGIGRQTAEQAAAEGAALLLIDRS-SYVHELAATLAQSGCLVLALEADLEAWESTEQAFAAGVAHFGRIDVLINNVGGtIWARPFAEYQP 103
                 89*******************************.5699*******99***************************************9899********* PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSH CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTd 185
                 +++e+ i   l+ +++ +ra+lp mlkq +G+Ivn+sSva+  +  + ++YsA+K++v++ltrs+a+e++ +gir+navaPG+++ +
  CTQ28312.1 104 DQIEKEIRRSLFPTLWGCRAALPWMLKQGKGSIVNISSVAT--AGVNRVPYSAAKGGVNALTRSIAMEYSGSGIRINAVAPGGTEAP 188
                 ****************************************9..89999***********************************9954 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.5   1.8e-10   7.9e-07       3     161 ..       8     164 ..       6     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.8e-10
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE.---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvih.aAgvlrdklleem 100
                 ++itG++ g+G+++a++ a++ga+ l+l+ Rs    +  ++l a+l+++g+ v +++aD+   ++ e+++++  a++++i   i+   g++  ++++e 
  CTQ28312.1   8 VVITGAAQGIGRQTAEQAAAEGAA-LLLIDRS----SYVHELAATLAQSGCLVLALEADLEAWESTEQAFAAGVAHFGRIDVLINnVGGTIWARPFAEY 101
                 79********************96.7788899....56778999*************************************998725678889999999 PP

                 -HHHHH....HHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHH CS
          KR 101 taedle....qvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalae 161
                 + +++e    + l p + G++     + ++    +v +SS+a+      ++ Y+aa   ++al +
  CTQ28312.1 102 QPDQIEkeirRSLFPTLWGCRAALPWMLKQGKGSIVNISSVATA--GVNRVPYSAAKGGVNALTR 164
                 99887511115666888888776666667777888888888874..4456788888777777765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.4e-05      0.29       1      61 [.       8      73 ..       8     105 .. 0.85
   2 ?    1.2   0.0     0.047   2.1e+02     138     166 ..     148     173 ..     124     215 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.4e-05
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.....elveldltdrsalerlfk 61
                +++tGa+  iG++++++ +++g  ++ +dr s+ ++ a+            e+dl   +++e++f+
  CTQ28312.1  8 VVITGAAQGIGRQTAEQAAAEGAALLLIDRSSYVHELAATLAQsgclvLALEADLEAWESTEQAFA 73
                68*****************************98888766554478888777888888888888776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.047
                 -SSHHHHHHHHHHHHHHHHHHHH.T-EEEE CS
   Epimerase 138 pnspYaaaKlageklveayaaqy.glnaii 166
                  + pY+aaK  +  l++++a +y g    +
  CTQ28312.1 148 NRVPYSAAKGGVNALTRSIAMEYsG----S 173
                 5779999999999999999999933....2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1856.47
//
Query:       CTQ28313.1  [L=338]
Description: Toluate 1,2-dioxygenase electron transfer component (Includes: Ferredoxin; Ferredoxin--NAD(+) reductase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.8e-21   74.5   0.0    1.6e-20   73.8   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    3.3e-15   55.8   4.6    7.3e-14   51.5   4.2    2.2  2  Fer2           2Fe-2S iron-sulfur cluster binding domain
    1.3e-14   54.3   0.0    2.3e-14   53.5   0.0    1.4  1  FAD_binding_6  Oxidoreductase FAD-binding domain
     0.0021   18.2   0.0       0.16   12.1   0.0    2.2  2  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   3.5e-24   1.6e-20       1     108 [.     210     312 ..     210     313 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 3.5e-24
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    m+agGtG+aP++s+l++++ +   +++v+l+yG+ +++dl+  + l+++ ++l g  ++++v   +e++ + ++g+v+d+l + +l+  ++++++y
     CTQ28313.1 210 MLAGGTGLAPLLSMLHTLQTQ-GSQRPVMLLYGVTRDCDLVKTDALDTFTQQLTG-YRWLPV-VADENSTCPQRGFVTDHLDDAMLN--NGDVDIY 300
                    9******************98.999******************************.89****.777777789*********777777..******* PP

                    EECSHHHHHHHH CS
  NAD_binding_1  97 vCGppgMikavr 108
                    +CGpp+M++av+
     CTQ28313.1 301 LCGPPPMVNAVA 312
                    *********986 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   4.2   1.6e-17   7.3e-14       3      78 .]      10      86 ..       8      86 .. 0.85
   2 ?    2.5   0.0     0.032   1.4e+02      18      36 ..     286     303 ..     280     304 .. 0.89

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 1.6e-17
                TTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE..CTT..SSSSTHHHHHTTEEEEGGGSEES CS
        Fer2  3 idgkevevevadgettlldaaeenggidipysCggggCgtClvevlegev..qsd..etelegeeldegklrlaCqtivt 78
                 dg ++ +++++ge+ +ldaa ++ ++ +p++C  g CgtC++++ +ge+   +d   ++l+++e +++++ l+Cq+++t
  CTQ28313.1 10 EDGVTRFIQCNAGEK-VLDAAYRQ-KVNLPMDCSDGVCGTCKCHCASGEYdlGEDylDEALSDDEAQARQV-LTCQMVPT 86
                689************.*******9.*************************863337766677776555555.*****986 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.032
                 BHHHHHHHTTTTTSTTSSS CS
        Fer2  18 tlldaaeenggidipysCg 36 
                  l da+ +ng++di y+Cg
  CTQ28313.1 286 HLDDAMLNNGDVDI-YLCG 303
                 489***********.9997 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   5.2e-18   2.3e-14       3      99 .]     110     200 ..     108     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 5.2e-18
                    EEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEECETTCCEEEEEE.BSST.TECCEEEEEEE--TT-HHHHHH.HCS-TT-EEEEEEEE-S CS
  FAD_binding_6   3 kltekeevsedtrifrfklpsekqklglpvGqhvflrlkikgeaviRsYtpisse.nekGelellvkvypgGkmsqaL.delkigdtleikGPlGk 96 
                    ++ +++ +s+    + ++l+++ +   +++Gq+++++++  g+  +R+Y++ s + + +G++  l++++pgG msq L +++++gd l+++GP+G+
     CTQ28313.1 110 QVRQVNLLSDTAIELVVALDEPLA---FLPGQYINIQVP--GTPHVRAYSFSSLPgSLEGRF--LIRNVPGGMMSQWLtQRARPGDRLTLSGPMGS 198
                    577788899999999999996655...999******999..8889*****999985688877..**************777*************** PP

                    EEC CS
  FAD_binding_6  97 feY 99 
                    f Y
     CTQ28313.1 199 F-Y 200
                    9.5 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   3.5e-05      0.16       4      49 ..     208     249 ..     206     266 .. 0.85
   2 ?    3.9   0.0     0.012        53     132     152 ..     292     312 ..     271     315 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.5e-05
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   4 vllvagGiGitpfisilkdllkkskkealktkkikliwvvresssl 49 
                    +l++agG+G++p++s+l  l  + +    + + + l+ v+r+ + +
     CTQ28313.1 208 LLMLAGGTGLAPLLSMLHTLQTQGS----QRPVMLLYGVTRDCDLV 249
                    89***************99888777....88888899999887655 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.012
                    xxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 132 hknssvgvfvCGppklvkevk 152
                     +n+ v ++ CGpp +v+ v+
     CTQ28313.1 292 LNNGDVDIYLCGPPPMVNAVA 312
                    5788999**********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2671.95
//
Query:       CTQ28314.1  [L=161]
Description: Benzoate 1,2-dioxygenase subunit beta [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-44  150.8   0.3      3e-44  150.6   0.3    1.0  1  Ring_hydroxyl_B  Ring hydroxylating beta subunit
    8.1e-05   22.8   0.0    0.00014   22.0   0.0    1.4  1  SnoaL_4          SnoaL-like domain
  ------ inclusion threshold ------
       0.16   12.6   0.3       0.23   12.1   0.3    1.7  1  SnoaL_2          SnoaL-like domain


Domain annotation for each model (and alignments):
>> Ring_hydroxyl_B  Ring hydroxylating beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.6   0.3     5e-48     3e-44       2     143 ..      14     153 ..      13     154 .. 0.98

  Alignments for each domain:
  == domain 1  score: 150.6 bits;  conditional E-value: 5e-48
                      HHHHHHTT-HHHHHCTEEEEEEEEEE-B----GGGGGGSBTS-EEEEE-HHHHHHHHHHHTSTT-GGGSS--EEEEEEEEEEEEE-SSTTEEEE CS
  Ring_hydroxyl_B   2 eAelLDdrdydaWlallaedihYwmpareereererdpqaeesaifdddragLedRvrrietgrswaenPpsRtrhlvsnVeveeteadgelev 95 
                      eA+lLDdr++d+Wl+++++++ Ywmpa+ ++++ +rdpq+e s+i++++r+gLedRv ri+t+rs+a++P++Rt+h++snVe+   e+d+ lev
       CTQ28314.1  14 EARLLDDRQWDEWLSCYSPQVVYWMPAWGDDDQLTRDPQKEISLIYYPNREGLEDRVYRIKTERSGASTPEPRTTHIISNVELMG-ESDEGLEV 106
                      9*******************************************************************************99988.69999*** PP

                      EEEEEEEEEETTTEEEEEEEEEEEEEEE-SSTEEEEEEEEEES-SSBS CS
  Ring_hydroxyl_B  96 rsnflvlrnrlerqvdifaGeredvlrrsddsfkiarrtilldnsvil 143
                      r+++++ ++r++ ++d ++G +  +l ++d+  +i+r+t+ l+n++i+
       CTQ28314.1 107 RYSWVTWSHRYQ-HTDAYFGSTCCTLIEQDGRPQIVRKTVRLNNDYIR 153
                      ************.*********************************98 PP

>> SnoaL_4  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.3e-08   0.00014       7     116 ..       5     153 ..       1     155 [. 0.69

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.3e-08
                 HHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTS...............--EES.....HHHHHHHHHS.......HHHHHH-EEEEE---EEEEE CS
     SnoaL_4   7 eaIrdlvarygyylDtkdweeladlFtedavvdytgvg.............egvleg.....rdairaalre.......aldgfaltqHllsnplield 80 
                 e++r++++  +++lD+++w+e+ +++ +++v+ ++++g             +          r+++++ + +       a +++++t+H++sn     +
  CTQ28314.1   5 EQVRQFLYYEARLLDDRQWDEWLSCYSPQVVYWMPAWGdddqltrdpqkeiS----LiyypnREGLEDRVYRiktersgASTPEPRTTHIISNVELMGE 99 
                 7899*********************************997666555544440....15555566666655555555444666777*******9888775 PP

                 TT...EEEEEEEEEEEEEETT..............EEEEEE...EEEEEEEEEE CS
     SnoaL_4  81 gd...tAtgrayllatlvrdg..............dggrqvl.aggryedelvr 116
                 +d   + + ++  + + + ++              dg++q +    r+ ++++r
  CTQ28314.1 100 SDeglEVRYSWVTWSHRYQHTdayfgstcctlieqDGRPQIVrKTVRLNNDYIR 153
                 552124555555555554444677777777777777777777344677777777 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   3.9e-05      0.23       7      32 ..      17      43 ..       7     139 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.9e-05
                HHHTTCHHHHHHTEEEEEEEEET.TSE CS
     SnoaL_2  7 alnagdldalaalfapdvvwedp.gge 32
                 l+++ +d+++++++p vv++ p  g+
  CTQ28314.1 17 LLDDRQWDEWLSCYSPQVVYWMPaWGD 43
                6899*****************998555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1297.67
//
Query:       CTQ28315.1  [L=460]
Description: 2-halobenzoate 1,2-dioxygenase large subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-21   74.9   0.0      7e-21   74.0   0.0    1.5  1  Rieske           Rieske [2Fe-2S] domain
    7.8e-19   68.5   0.4    1.2e-18   67.8   0.4    1.2  1  Ring_hydroxyl_A  Ring hydroxylating alpha subunit (catalytic 
  ------ inclusion threshold ------
      0.024   14.6   0.0      0.045   13.7   0.0    1.4  1  Rieske_2         Rieske-like [2Fe-2S] domain
       0.15   11.6   0.1        1.2    8.6   0.0    2.4  2  Aromatic_hydrox  Homotrimeric ring hydroxylase


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   1.6e-24     7e-21       1      82 [.      49     131 ..      49     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 1.6e-24
                 CEEEEEEGGGC-.TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGG.SEEETT.EEE-TTT--EEETTSBEEE-TTH CS
      Rieske   1 swvavakesdvp.egdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplse.gkidekgvleCpcHgwaydadGkvikgPap 82 
                 +wv +a+es++p +gd++t+++g++p+++ rd+++e++Al + C Hrga l++ +++ +k+ ++Cp+Hgw+++++Gk++k++ +
  CTQ28315.1  49 NWVFLAHESQIPqPGDYYTLTLGRQPVIITRDKKNELHALINSCAHRGAMLCRrKTG-NKNSFTCPFHGWTFSNNGKLLKAKDE 131
                 69***************************************************7777.666*****************998776 PP

>> Ring_hydroxyl_A  Ring hydroxylating alpha subunit (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.4   2.8e-22   1.2e-18       9     212 ..     200     438 ..     194     440 .. 0.84

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 2.8e-22
                      HHHHHESS-HHHHHHHHHHCCCCCTTTHHHHHHCS-TTS-..--EEEEE-SSSS-EEEEEES-THHHHHHHHHHHHHHHHS.HHHHHHHGCHHH CS
  Ring_hydroxyl_A   9 aetldikaNWKlaaEnflEsYHvpvlHpellrallpeele..taeaaeyagfgphgsgsyvgqpgdlrlepaaavreldae.aaapeleglede 99 
                      + ++ ++ NWKl aEn  + YHv+v+H + + +  +++ e    +   ++g+++   g+y+++ g++ l++ a  +e+    a +++l  +  e
       CTQ28315.1 200 SSSYVYEGNWKLGAENGADGYHVSVVHWNYASTMSRRNYEaeGTHTVDANGWSKSLGGGYGFDNGHMLLWTRALNPEVRPVyAHRERLQAEFGE 293
                      4577889********************99977777777667788999999*******************************8888887777777 PP

                      HCEEEE.....EEEETTTEEEE..TTTTEEEEEEESSTT-EEEEEEEEEETT..S-HHH..HHHHHHHHHHHCSTTHHHHHHHHHHHHHHTTS. CS
  Ring_hydroxyl_A 100 qdrgal.....hftifPnlsillapdhvvifrviPtgpettevelealvppdataseel..keelaavvdrtfgvveeeDaelceevQqglrs. 185
                      ++ +++     +  ++Pn+ +   + + +i++++P ++++tev++++++p+++  +++    ++++++++   g+   +D e   ++Q+g  + 
       CTQ28315.1 294 RRADQMvnetrNLCLYPNVYLM-DQFSTQIRVIRPIAVDKTEVTIWCFAPKGESDQARAlrIRQYEDFFNV-SGMGTPDDLEEFSACQRGYLGe 385
                      77777799999********998.99999************************8744444447777777766.357999************8888 PP

                      ........................TTTSBSCCC...SCSSHHHHHHHHHHHHHH CS
  Ring_hydroxyl_A 186 ........................rgyepgpvl...srqEeavrhFhewvrdrv 212
                                               g++p++ +   s+ E  + ++h++++  +
       CTQ28315.1 386 nlpwsdlsrgalrwvdgadehaqhAGFSPRL-SgvkSEDEALYIAHHHHWQTLM 438
                      9999999999999999999998886666655.2344888888888999998776 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     1e-05     0.045       1      97 [.      49     141 ..      49     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1e-05
                 SEEEEEECCCS-TTB-EEEEE.TTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS-TTSB-BEE-EEES CS
    Rieske_2   1 ewvpvckledlvketgvaalv.dgkqvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecledeevslkvypvrve 97 
                 +wv +++ +++++      l  + + v++ r +k+e++A+ n +   + ++l r + g+k      ++P ++ +f+ ++G+ l++++ s   yp   +
  CTQ28315.1  49 NWVFLAHESQIPQPGDYYTLTlGRQPVIITRDKKNELHALINSCAH-RGAMLCRRKTGNK---NSFTCPFHGWTFS-NNGKLLKAKDESTGGYPPSFK 141
                 69999999***999997776659999999***************99.6788999888887...78899****9999.789999998888877776555 PP

>> Aromatic_hydrox  Homotrimeric ring hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.21   9.5e+02      44      96 ..      46     102 ..      38     110 .. 0.74
   2 ?    8.6   0.0   0.00026       1.2      29      54 ..     202     228 ..     167     238 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.21
  Aromatic_hydrox  44 fdPghvlihkdsqlviesd.lalplGfkPv...geratevkvvvddtgpkGllnlyt 96 
                      f+   v++ ++sq  +  d ++l+lG +Pv    ++++e +++ ++ + +G + +  
       CTQ28315.1  46 FEGNWVFLAHESQIPQPGDyYTLTLGRQPViitRDKKNELHALINSCAHRGAMLCRR 102
                      555667777777777666625899999995333699999999999999999987754 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00026
  Aromatic_hydrox  29 rrvikanWrlavengfdPghvl.ihkd 54 
                        v + nW+l  eng d  hv  +h++
       CTQ28315.1 202 SYVYEGNWKLGAENGADGYHVSvVHWN 228
                      456789**************9615654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 4065.28
//
Query:       CTQ28316.1  [L=308]
Description: Catechol 1,2-dioxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-64  214.4   0.0      1e-63  214.1   0.0    1.1  1  Dioxygenase_C    Dioxygenase
    1.8e-22   79.0   0.4      3e-22   78.3   0.4    1.4  1  Dioxygenase_N    Catechol dioxygenase N terminus
    3.4e-05   24.0   0.0    0.00014   22.0   0.0    1.9  2  CarboxypepD_reg  Carboxypeptidase regulatory-like domain


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.1   0.0   1.7e-67     1e-63       1     180 [.     105     289 ..     105     291 .. 0.98

  Alignments for each domain:
  == domain 1  score: 214.1 bits;  conditional E-value: 1.7e-67
                    ---S--EET--EEESEEE---S--TT--EEEEEEEEE-TTSSB-TT-EEEEE---TTS--TTS-TTS-SSTTTTEEEEE--TTSEEEEEEE----E CS
  Dioxygenase_C   1 iegPlyveeapededlarledkgeeegerlvlsGrvldeaGkplagalvelWhanaeGrYshkkeeheapelnlrgriltdeeGryrirtikPapY 96 
                    iegPlyv++ap +e++ar++d g + ge++ l+G+v d++G+p+a+a v++Whan+ G Ys +++   ++e+nlr+ri t ++Gry++r+i P++Y
     CTQ28316.1 105 IEGPLYVANAPLAEGHARMDD-GADAGEVMWLHGEVKDTEGRPVANAIVDIWHANTLGNYSFFDPG--QSEYNLRRRIRTGADGRYSVRSIMPSGY 197
                    89*******************.9*******************************************..9*************************** PP

                    E--TTSHHHHHHHHTT---EE-SEEEEEEE-TTB--EEEEEEETT-TTTTS-TT----TTTEE--EEE-SH........S-.EEEEE--EE- CS
  Dioxygenase_C  97 pipndGptgklldalgrhawRPaHiHfsvsapghrklvTqlyfegdkyladdivsaakeeLiaeleesede........eekalelefdlvL 180
                    ++p+dGpt+klld lgrh++RPaHiHf+vsapgh++l+ q++++gdkyl+dd+++a++++Lia++ + +d         e++ +e+ fd+ L
     CTQ28316.1 198 GCPPDGPTQKLLDRLGRHGNRPAHIHFFVSAPGHKHLTSQINLNGDKYLWDDFAFATRDGLIADPVKVTDReiiaqrnlEGEHTEVCFDFTL 289
                    *******************************************************************99999999999999999*****998 PP

>> Dioxygenase_N  Catechol dioxygenase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.4     5e-26     3e-22       1      73 [.      27      94 ..      27      96 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 5e-26
                   -HHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH.....TT-HHHHHHHTTHHHHHHHHHHHHHHH CS
  Dioxygenase_N  1 dpRlkeiverlvrhlhdfirevdlteeEwwaavdfLtrvGqisddkrqEfiLlsdvLGlehlvdaindakeag 73
                   d+R+k+i++rl+++++++i+++++teeE+w+av++L ++G      rqE+ Ll+++LGleh++d+++da +a+
     CTQ28316.1 27 DERFKAIIHRLLENICTLIDDYNVTEEEFWHAVNYLHELGG-----RQEAALLAAGLGLEHFLDLRQDAIDAA 94
                   89***************************************.....**********************98875 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.4e-08   0.00014       2      48 ..     135     195 ..     135     198 .. 0.82
   2 ?   -2.0   0.0      0.76   4.6e+03      51      70 ..     223     241 ..     217     244 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.4e-08
  CarboxypepD_reg   2 isGrVtdasgapiagatVtvtnadtg..............tvastttdadGafrlrglppg 48 
                      ++G V+d+ g+p+a+a V + +a+t                +++ +t+adG++++r++ p 
       CTQ28316.1 135 LHGEVKDTEGRPVANAIVDIWHANTLgnysffdpgqseynLRRRIRTGADGRYSVRSIMPS 195
                      68******************9876623566666667666679**************99884 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.76
  CarboxypepD_reg  51 svtvsapGyatatreevtlt 70 
                         vsapG +  t+ ++ l+
       CTQ28316.1 223 HFFVSAPGHKHLTS-QINLN 241
                      567999**999996.58776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2646.78
//
Query:       CTQ28317.1  [L=96]
Description: muconolactone delta-isomerase (MIase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-40  137.3   0.0    1.5e-40  137.2   0.0    1.0  1  MIase     Muconolactone delta-isomerase
     0.0037   17.2   0.0     0.0052   16.7   0.0    1.1  1  GYD       GYD domain


Domain annotation for each model (and alignments):
>> MIase  Muconolactone delta-isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   0.0   1.7e-44   1.5e-40       1      90 []       1      90 [.       1      90 [. 0.99

  Alignments for each domain:
  == domain 1  score: 137.2 bits;  conditional E-value: 1.7e-44
       MIase  1 mlFlvemtvklpedlpaeevaelkarekaraqelqrqGklvrlwrvvgeyanisifdvedndeLhelLssLPlfpymtievtpLarHpsd 90
                mlF+vemtv++p+++pa+e++e+k+reka++q+lqr+Gk++++wrv+g yan+sifdv+d++eLh++L++LPl+p+m i+v++L+rHps+
  CTQ28317.1  1 MLFKVEMTVNIPPGFPANEAEEIKQREKAYSQQLQREGKWRHIWRVAGLYANVSIFDVQDAEELHQILMGLPLYPFMAIKVEALCRHPSS 90
                9***************************************************************************************95 PP

>> GYD  GYD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.8e-07    0.0052      14      66 ..      19      69 ..      16      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.8e-07
         GYD 14 glkdsperreeakealveslGgkleslyatlGeyDvvvivEapDdetaaalsl 66
                + ++ ++r+++ +++l  + +gk+++++ + G y  v i+++ D e+  ++ +
  CTQ28317.1 19 EAEEIKQREKAYSQQL--QREGKWRHIWRVAGLYANVSIFDVQDAEELHQILM 69
                5678899999999999..889*************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 839.41
//
Query:       CTQ28318.1  [L=372]
Description: Muconate cycloisomerase 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-46  159.1   1.5    1.7e-46  158.6   1.5    1.1  1  MR_MLE_C  Enolase C-terminal domain-like
    5.2e-32  110.5   0.1    1.3e-31  109.3   0.1    1.6  1  MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N
  ------ inclusion threshold ------
      0.052   14.2   0.4        4.2    8.1   0.0    2.9  2  HHH_5     Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.6   1.5   2.8e-50   1.7e-46       8     219 ..     155     363 ..     148     364 .. 0.93

  Alignments for each domain:
  == domain 1  score: 158.6 bits;  conditional E-value: 2.8e-50
                 HHHHHHT.-SEEEEETSSSHHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESSSSTTTHHHHHHHHHHHH.SSEEEES CS
    MR_MLE_C   8 elvaeqg.fravKlkvggddvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEPvppeddleglaelrara.sipiaag 104
                 +l+ae g +ra+Klk+g+ ++a d++++ra+ ea+  gd+++++vD+nqawd+at  + +rel++++++++E+Pv++ +d ++l +l+ ++ ++ i a+
  CTQ28318.1 155 KLLAE-GrHRAFKLKIGARELATDLRHTRAIVEAL--GDRASIRVDVNQAWDAATGAKGCRELAAMGVDLIEQPVSA-HDNAALVRLS-QQiETAILAD 248
                 45666.45***************************..5577**********************99************.67999*****.66699***** PP

                 TTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCS.SHHHHHHHHHHHHTTTTBEEEEEEGGGGHTSGCSBSSSSEEETT CS
    MR_MLE_C 105 EslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgs.gglglaaslhlaaaipnllileyfldaelleeelleeplevedG 202
                 E +++++d  +l+++g   ++ ++++++gG++ ++++a++a+a+g+ +  +++  g +g++aslh  +++p l++  +++++ ll++++++ pl++ dG
  CTQ28318.1 249 EAVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAGIGLYGGTMLeGTVGTVASLHAWSTLP-LQWGTEMFGPLLLKDDIVSVPLTFADG 346
                 ****************************************************9659**************8.888888888888*************** PP

                 EEECTSSSBTSSEB-HH CS
    MR_MLE_C 203 rvtvpdgpGlGveldee 219
                  v++p++pGlGvelde+
  CTQ28318.1 347 QVALPQTPGLGVELDED 363
                 ***************87 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.1   2.1e-35   1.3e-31       3     117 .]       9     128 ..       7     128 .. 0.95

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 2.1e-35
                 EEEEEEEEEEECEEEETTEEEEEEEEEEEEEEECTTEEEEEEEE-STT......GHHHHHHHHHHHHHHHHTTSBTTHHHHHHHHHHHHCSSCHHHHHH CS
    MR_MLE_N   3 evvvveeavklrPvqlavttvqkqslvlvkietseGvvGigeatsvgg......raetikaelddhlapllvgkdaanisdlaqllkravlgnmsAkaa 95 
                 e  +v++ +++rP++l++tt++ qslv+v+++ s+G+ Gigeat++gg      ++e+i +++ ++l pll g++a+n+++l+  ++ a++gn++Ak+a
  CTQ28318.1   9 ESWIVDV-PTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIGGlsygveSPEAISSAITHYLTPLLKGQPADNLNALTARMNGAIKGNTFAKSA 106
                 6667755.5568*************************************************************************************** PP

                 HHHHHHHHHHHHTTSBHHHHTT CS
    MR_MLE_N  96 idmAlwDlkakalnlpladLlG 117
                 i++Al+D+++kal+lp++ LlG
  CTQ28318.1 107 IETALLDAQGKALGLPVSALLG 128
                 *********************9 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0007       4.2       7      37 ..      44      74 ..      40      80 .. 0.89
   2 ?    3.0   0.1     0.026   1.5e+02      13      32 ..     268     288 ..     263     295 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0007
                STT--HHHHHHHHTTT--SHHHHHHS-HHHH CS
       HHH_5  7 vsGiGpktAlallsaGiesvedlaaadveeL 37
                + GiG++t +  ls G+es+e++ +a ++ L
  CTQ28318.1 44 ICGIGEATTIGGLSYGVESPEAISSAITHYL 74
                66**********************9987766 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.026
                 HHHHHHHTT.T--SHHHHHHS CS
       HHH_5  13 ktAlallsa.Giesvedlaaa 32 
                 ++Al++++a G +sv +la+ 
  CTQ28318.1 268 AYALKIAKAgGPNSVLALARV 288
                 689******66****999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2846.13
//
Query:       CTQ28319.1  [L=265]
Description: Pca regulon regulatory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-32  110.2   0.4    1.5e-31  108.9   0.1    1.8  2  IclR           Bacterial transcriptional regulator
    2.4e-13   49.7   0.4    2.4e-13   49.7   0.4    2.0  2  HTH_IclR       IclR helix-turn-helix domain
    0.00014   22.1   0.0    0.00045   20.5   0.0    1.8  1  Rrf2           Transcriptional regulator
    0.00066   19.7   0.9     0.0029   17.7   0.4    2.2  3  HTH_9          RNA polymerase III subunit RPC82 helix-turn-he
    0.00099   19.0   1.4     0.0018   18.1   0.2    2.1  2  MarR_2         MarR family
      0.001   19.0   0.1     0.0047   16.8   0.0    2.1  2  HTH_11         HTH domain
     0.0011   18.6   0.0     0.0044   16.6   0.0    2.1  2  GntR           Bacterial regulatory proteins, gntR family
     0.0033   17.2   0.0      0.012   15.4   0.0    2.0  1  HTH_5          Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.026   14.3   0.0    1.4  1  HTH_DeoR       DeoR-like helix-turn-helix domain
      0.038   13.6   0.2       0.11   12.1   0.2    1.7  1  HTH_24         Winged helix-turn-helix DNA-binding
      0.045   13.6   0.0      0.097   12.6   0.0    1.5  1  TrmB           Sugar-specific transcriptional regulator TrmB
      0.089   12.7   0.0       0.18   11.7   0.0    1.4  1  DUF977         Bacterial protein of unknown function (DUF977)
      0.096   12.7   0.0       0.19   11.7   0.0    1.4  1  Dimerisation2  Dimerisation domain
       0.12   10.9   0.0       0.16   10.5   0.0    1.1  1  Cullin         Cullin family


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.4   3.1e+03      38      62 ..      39      63 ..      34      72 .. 0.75
   2 !  108.9   0.1   1.2e-34   1.5e-31       5     128 ..     140     263 ..     137     264 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.4
                HHHT---SSTTS--SHHHHHHHHHH CS
        IclR 38 erlelkrlterTitdpeeLleeLak 62
                +rl++ +l+++T  ++++ +++L +
  CTQ28319.1 39 QRLTISQLSQKTQISRAAVRRCLYT 63
                5667888888888888888888765 PP

  == domain 2  score: 108.9 bits;  conditional E-value: 1.2e-34
                 ETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEEEET CS
        IclR   5 avsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvsgpt 103
                 + +  G+rlp++at++G++lL+al+ee+le  l+r +l r+t++T++d   L++e+a+vR qGya+ +   e g++++A+p+  ++g+vvaA++v +p+
  CTQ28319.1 140 IDLGRGSRLPAWATSMGRVLLSALPEEQLEVTLSRATLIRYTPHTLCDLSGLRAEIARVRMQGYALADRQIEVGLCSLAVPVLSRHGQVVAALNVGVPA 238
                 55668********************************************************************************************** PP

                 TTSHHHHHHHHHHHHHHHHHHHHHH CS
        IclR 104 arlteeelkeellalvreaArkisr 128
                 a+++ + lke+ la +r aA ++s 
  CTQ28319.1 239 ATVSAAALKEKALAPLRRAAMDLSL 263
                 ********************99985 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.4   1.8e-16   2.4e-13       1      49 [.      23      71 ..      23      74 .. 0.97
   2 ?   -3.0   0.1       5.2   6.7e+03      27      36 ..     233     242 ..     230     243 .. 0.80

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.8e-16
                HHHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  1 sldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                sl+R+l++L+a++ ++q+lt+s+l+++t +++++v+R+L tL  lG+v 
  CTQ28319.1 23 SLARGLEVLNAFTPQRQRLTISQLSQKTQISRAAVRRCLYTLAALGMVH 71
                79*********************************************96 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.2
                 HHTS-HHHHH CS
    HTH_IclR  27 rtglpkStvh 36 
                 + g+p +tv+
  CTQ28319.1 233 NVGVPAATVS 242
                 6899***996 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.5e-07   0.00045      20      61 ..      35      76 ..      24      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.5e-07
                SSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
        Rrf2 20 eeeeepvsseeiaerqnispsylekilakLrkaglvksvrGk 61
                 ++++ +++++++++++is+  +++ l +L+  g+v+s  G+
  CTQ28319.1 35 TPQRQRLTISQLSQKTQISRAAVRRCLYTLAALGMVHSPDGR 76
                4566679*******************************9997 PP

>> HTH_9  RNA polymerase III subunit RPC82 helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.4   2.2e-06    0.0029      25      57 ..      38      70 ..      37      71 .. 0.94
   2 ?   -2.3   0.0         4   5.1e+03      21      34 ..     176     189 ..     175     191 .. 0.84
   3 ?   -2.7   0.0         5   6.4e+03      39      51 ..     205     217 ..     202     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.2e-06
                HSSBEHHHHHHHHSSTHHHHHHHHHHHHHTTSE CS
       HTH_9 25 kgrltlrelvkktkLsldqVkksLvvLiqhrlV 57
                + rlt+++l++kt++s+  V++ L++L  +++V
  CTQ28319.1 38 RQRLTISQLSQKTQISRAAVRRCLYTLAALGMV 70
                679*************************99999 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4
                 HHHHHSSBEHHHHH CS
       HTH_9  21 tLlrkgrltlrelv 34 
                 tL+r++  tl +l+
  CTQ28319.1 176 TLIRYTPHTLCDLS 189
                 89999999998886 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5
                 STHHHHHHHHHHH CS
       HTH_9  39 LsldqVkksLvvL 51 
                 L  +q+  +L++L
  CTQ28319.1 205 LADRQIEVGLCSL 217
                 667899999**99 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.2   1.4e-06    0.0018      20      52 ..      37      71 ..      21      77 .. 0.81
   2 ?   -2.3   0.1       3.4   4.4e+03      27      50 ..     228     251 ..     224     260 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.4e-06
                S..EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE CS
      MarR_2 20 r..dltvgelarrlglsksavsrilkrLvaaGLve 52
                +  +lt+++l +++++s++av r l  L a G+v 
  CTQ28319.1 37 QrqRLTISQLSQKTQISRAAVRRCLYTLAALGMVH 71
                3457****************************995 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.4
                 HHHHHTSSHHHHHHHHHHHHHTTS CS
      MarR_2  27 larrlglsksavsrilkrLvaaGL 50 
                 ++++l++  +a++   + L ++ L
  CTQ28319.1 228 VVAALNVGVPAATVSAAALKEKAL 251
                 555666666666666666666655 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.7e-06    0.0047      12      43 ..      37      68 ..      28      77 .. 0.89
   2 ?   -2.3   0.0       3.5   4.5e+03      23      35 ..     166     180 ..     166     180 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.7e-06
      HTH_11 12 argpisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                +r+ +++++L++++ +Sr++vrr + +L +lg
  CTQ28319.1 37 QRQRLTISQLSQKTQISRAAVRRCLYTLAALG 68
                5667*******************999999888 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.5
      HTH_11  23 eeLnv..Srrtvrrd 35 
                 e+L+v  Sr+t  r+
  CTQ28319.1 166 EQLEVtlSRATLIRY 180
                 567776699998876 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.4e-06    0.0044      22      61 ..      39      77 ..      32      80 .. 0.93
   2 ?   -3.1   0.0       5.1   6.5e+03      13      25 ..     137     149 ..     130     150 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.4e-06
                SB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCE CS
        GntR 22 dkLPsereLaaefgVsrttvReALrrLeaeglverrqgrG 61
                ++L + ++L+++  +sr  vR+ L +L+a g+v++ +gr+
  CTQ28319.1 39 QRL-TISQLSQKTQISRAAVRRCLYTLAALGMVHSPDGRS 77
                789.9*****************************999986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.1
                 HHTTSS-TTSB-- CS
        GntR  13 IlsgelrpGdkLP 25 
                 +ls  l  G++LP
  CTQ28319.1 137 LLSIDLGRGSRLP 149
                 4555666677776 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   9.6e-06     0.012      14      47 .]      39      72 ..      28      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.6e-06
                SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
       HTH_5 14 gelcvcelaeelglsqstvShHLkkLreaGLVek 47
                + l++++l+ ++++s+++v++ L  L  +G+V++
  CTQ28319.1 39 QRLTISQLSQKTQISRAAVRRCLYTLAALGMVHS 72
                679***************************9975 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     2e-05     0.026      11      44 ..      37      70 ..      31      75 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2e-05
    HTH_DeoR 11 qqgklsveelvellgvSeaTiRRDLneLeeqgll 44
                q++ l++ +l++  ++S a +RR L +L++ g++
  CTQ28319.1 37 QRQRLTISQLSQKTQISRAAVRRCLYTLAALGMV 70
                7899*************************99986 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   8.3e-05      0.11      16      41 ..      39      64 ..      37      70 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.3e-05
      HTH_24 16 prisqreLAerlglSpstvnrrlkrL 41
                 r+++++L++++ +S+++v+r+l  L
  CTQ28319.1 39 QRLTISQLSQKTQISRAAVRRCLYTL 64
                59*******************98555 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.6e-05     0.097      20      58 ..      38      76 ..      30      87 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.6e-05
                HCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 20 lgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                ++++t++++++++ ++r+ v + L  L   G+V+  +gr
  CTQ28319.1 38 RQRLTISQLSQKTQISRAAVRRCLYTLAALGMVHSPDGR 76
                56899****************************988877 PP

>> DUF977  Bacterial protein of unknown function (DUF977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.18      23      56 ..      37      70 ..      29      77 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
      DUF977 23 kneritisdleritGvgrtsvrkylvdvlerGdl 56
                +++r+tis+l + t + r +vr++l    + G +
  CTQ28319.1 37 QRQRLTISQLSQKTQISRAAVRRCLYTLAALGMV 70
                578**********************988777755 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015      0.19      20      65 ..      27      73 ..      20      83 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
  Dimerisation2 20 eLgvFdlLke.eeplsaeevaeelgasvkGterLldacvaLgLLere 65
                    L+v ++    ++ l+ ++++++ ++s  +++r l +++aLg+ ++ 
     CTQ28319.1 27 GLEVLNAFTPqRQRLTISQLSQKTQISRAAVRRCLYTLAALGMVHSP 73
                   566777776668999****************************9965 PP

>> Cullin  Cullin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00013      0.16     554     589 ..      30      65 ..      12      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
      Cullin 554 vLllFndeeeklsyeeiqeatglpekeLkrtLqsLa 589
                 vL +F  ++++l++++++++t+++ + ++r+L  La
  CTQ28319.1  30 VLNAFTPQRQRLTISQLSQKTQISRAAVRRCLYTLA 65 
                 8999*99999************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2098.45
//
Query:       CTQ28320.1  [L=499]
Description: Methyl viologen resistance protein SmvA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-43  146.7  97.4      2e-39  135.6  57.0    2.5  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.31    9.8  30.5        1.7    7.4  10.7    3.0  2  Sugar_tr  Sugar (and other) transporter
       0.39   10.3   3.5       0.37   10.4   0.2    2.6  2  TMEM100   Transmembrane protein 100


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6  57.0   3.3e-43     2e-39       1     352 [.      11     403 ..      11     404 .. 0.85
   2 !   25.2  32.4   1.1e-09   6.8e-06       2     156 ..     261     421 ..     260     490 .. 0.78

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 3.3e-43
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 +ll+++ +a+++++l +a+p +l+ +lg+s+ e+ +++ +y+l++a ++lp+G+l+d++G +r+lllg ++f++++l++++ s+   +l+++r+l ++g
  CTQ28320.1  11 ILLVYIPVAIDATVLHVAAP-TLSVALGSSGNELLWIIDIYSLVMAGMVLPMGALGDKIGFKRLLLLGSAIFGIASLCAAL-SPTAmTLIASRALLAVG 107
                 589999**************.******************************************************888887.788879*********** PP

       MFS_1  99 agalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                 a++++pa +a i+  f++ ++r++a+gl++a  s Ga++gpl+gg+l++++ W +vf+i+ ++ l+++ + + ++p+ p +r+ +    +         
  CTQ28320.1 108 AAMIVPATLAGIRSTFAEaSQRNMALGLWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVIAINAKVVPRQPARREQPLNLLQAlvliaail 206
                 *******************************************************************9998888888888888887777769******* PP

       MFS_1 189 .................................kgtgpaplvpawkallkdpvlw.......illialllfffgfsglltllplylqevlgls...gll 244
                                                              k+l + +++         ++++ +++++   ++l+ + l++ + l +    + +
  CTQ28320.1 207 mlvfsaksalkgqlalwltalvalggaamltwfI----------RKQLSAARPMVdmrlfthRIILSGVMMAMTALITLVGFELLMAQELQFVhqkTPF 295
                 *999999998888887777776664444444430..........555555555523311122244444444444444444444455555555577757* PP

       MFS_1 245 laglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfnt 343
                 +ag+++  +++++ +++++ag l+ rlg r   + ++ll ++++lglal+ +++ ++l++ ++ l+Gf ++ +  ++ ++++  ap+e+a++a ++ ++
  CTQ28320.1 296 EAGIFMLPVMVASGFSGPIAGLLVSRLGLREVATGGMLLSAFSFLGLALTDFSTQQWLAWGLMTLLGFSVASALLASSSAIMAAAPKEKAAAAGAIETM 394
                 ***9999999999999*************************************999999999999********************98888866666668 PP

       MFS_1 344 agslggalg 352
                 a+ lg+ lg
  CTQ28320.1 395 AYELGAGLG 403
                 888**9998 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 1.1e-09
       MFS_1   2 llaaflsalarsilgpalplalaedlg....ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll...fasslwlllvlrv 93 
                 +l+++++a+++ i+++ + l++a++l+     +p e+g+ +  ++++++++ +++G l+ r+G r v   g+ll+a+++l l+   f+++ wl + l  
  CTQ28320.1 261 ILSGVMMAMTALITLVGFELLMAQELQfvhqKTPFEAGIFMLPVMVASGFSGPIAGLLVSRLGLREVATGGMLLSAFSFLGLAltdFSTQQWLAWGLMT 359
                 455556666666666666668888887555567777777777788899999999999999999999999999999999666664455577778888888 PP

       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyi 156
                 l G+  ++++ a+ ++i + +pke+ + a ++ ++++ lGa lg +l gl+++  +++a+  +
  CTQ28320.1 360 LLGFSVASALLASSSAIMAAAPKEKAAAAGAIETMAYELGAGLGIALFGLILTR-SYSASIAL 421
                 999999999999999999999998999999999999999999997777777733.44454444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  10.7   0.00029       1.7      49     120 ..      44     112 ..      22     177 .. 0.78
   2 ?    6.9  11.9    0.0004       2.4      41     177 ..     295     426 ..     260     435 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00029
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlas 120
                  +i  i++++ +   l +g lgd++G k  ll ++++f i++++ a+++   +   li++R l+ +g+ ++ 
  CTQ28320.1  44 LWIIDIYSLVMAGMVLPMGALGDKIGFKRLLLLGSAIFGIASLCAALSP---TAMTLIASRALLAVGAAMIV 112
                 566667777666666789*******************************...8999*******998876654 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0004
                 HHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHH CS
    Sugar_tr  41 keessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgal 139
                  e      g+++  ++v + +++ +agll+ r+G + +   + +l+  + +  a+++  ++ ++      l+G++v  a   ++  i   Apk+++ a 
  CTQ28320.1 295 FE-----AGIFMLPVMVASGFSGPIAGLLVSRLGLREVATGGMLLSAFSFLGLALTDFSTQQWLAWGLMTLLGFSVASALLASSSAIMAAAPKEKAAAA 388
                 33.....59999999*********************9987766666666555666665557788888899***************************** PP

                 HHHHHHHHHHHHHHHH.HHHHHHHTSS-TTHHHHHHHCC CS
    Sugar_tr 140 vslyqlaitfGilvaa.ifglglnktsnadgwrillglq 177
                 + +  +a+ +G  +++  fgl+l ++ +     ++ gl+
  CTQ28320.1 389 GAIETMAYELGAGLGIaLFGLILTRSYS-ASIALPSGLS 426
                 ***********98886156666644333.4555555555 PP

>> TMEM100  Transmembrane protein 100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.3      0.32   1.9e+03      65     104 ..     173     212 ..     163     217 .. 0.63
   2 ?   10.4   0.2   6.2e-05      0.37      80     109 ..     459     488 ..     444     496 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.32
     TMEM100  65 LvaGvvvtavaytfnshgsvisvlglvLLsaGlvllassa 104
                 +v+ + + +v       ++ ++ l  ++L a +++l+ sa
  CTQ28320.1 173 VVIAINAKVVPRQPARREQPLNLLQALVLIAAILMLVFSA 212
                 4555555555555555566666666666777777777765 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 6.2e-05
     TMEM100  80 shgsvisvlglvLLsaGlvllassavCWkv 109
                 +++  i+  +lvL +aG++ll+ +a  W+ 
  CTQ28320.1 459 AKTAFIQAHSLVLATAGVLLLLLAAGIWRS 488
                 456679999*******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       987  (0.0550505); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 3920.85
//
Query:       CTQ28321.1  [L=191]
Description: TetR family transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-12   44.7   0.4    1.6e-11   43.8   0.4    1.5  1  TetR_N     Bacterial regulatory proteins, tetR family
    1.7e-06   28.2   0.4    1.7e-06   28.2   0.4    2.1  2  TetR_C_6   BetI-type transcriptional repressor, C-terminal
    0.00056   19.9   0.4      0.004   17.2   0.0    2.2  2  TetR_C_27  Tetracyclin repressor-like, C-terminal domain
     0.0094   16.0   0.0      0.016   15.3   0.0    1.4  1  TetR_C_17  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.4   3.5e-15   1.6e-11       1      43 [.      13      55 ..      13      59 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 3.5e-15
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeL 43
                I+ aA++l  + G++a+tvr+IA++A+v++g l+++F+s  eL
  CTQ28321.1 13 IMQAAMRLALRGGFAAMTVRQIAREAQVAAGQLHHHFTSIGEL 55
                899***********************************98777 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.3      0.11   4.8e+02      22      56 ..      17      51 ..       3      78 .. 0.64
   2 !   28.2   0.4   3.8e-10   1.7e-06      22     111 ..      97     187 ..      79     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
                HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH CS
    TetR_C_6 22 elavwlafwaeaardpelaelqrenyarlrsnlra 56
                ++++ l    +a++  ++a+  +++  +l+++++ 
  CTQ28321.1 17 AMRLALRGGFAAMTVRQIAREAQVAAGQLHHHFTS 51
                44444444556677777777777777777766654 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 3.8e-10
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH.TTSCTTSTHHHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH CS
    TetR_C_6  22 elavwlafwaeaardpelaelqrenyarlrsnlrallaelae.gglradadaeaaAerlaAlidGLwlraalapeeldaeraralvrrhld 111
                   ++w +  + a +dp++++ +  + + ++++ +a+++++++ g++r+++ a+++A+r  Al+ GL    al+ + ld+++  + v+ ++ 
  CTQ28321.1  97 YIRLWREGQVLADSDPDIKAAYLLTMNMWHAETVAIIEQGLAsGEFRSAEPAADIAWRFIALVCGLDGIYALDAQALDEAAFSRYVNKMIT 187
                 5688889999999*****************************************************99999*******9999888887775 PP

>> TetR_C_27  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.12   5.4e+02      62      88 ..      23      49 ..       7      60 .. 0.80
   2 !   17.2   0.0   8.9e-07     0.004      49      92 ..     126     169 ..     102     182 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.12
                CT-STT--HHHHHHHHHHHSGGGTSHH CS
   TetR_C_27 62 aGeFkaadpeaaaravfdatarfhhPa 88
                +G F+a  ++++ar    a +++hh+ 
  CTQ28321.1 23 RGGFAAMTVRQIAREAQVAAGQLHHHF 49
                588999999999999999999999875 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 8.9e-07
                 HHHHHHHHHHHHHCT-STT--HHHHHHHHHHHSGGGTSHHHHHH CS
   TetR_C_27  49 eeqlaeIireGvaaGeFkaadpeaaaravfdatarfhhPalaae 92 
                 ++    Ii++G a+GeF++a+p+a     f a+++ ++ ++a +
  CTQ28321.1 126 HAETVAIIEQGLASGEFRSAEPAADIAWRFIALVCGLDGIYALD 169
                 556678******************99999999999888777655 PP

>> TetR_C_17  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.6e-06     0.016      49      85 ..     126     162 ..     106     178 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.6e-06
                 HHHHHHHHHHHHHTTS---SS-HHHHHHHHHHHHHHH CS
   TetR_C_17  49 vealkellqeGvergEfkPqlplesiakylisfldGl 85 
                  ++ ++++++G ++gEf+ + p+++ia  +i+++ Gl
  CTQ28321.1 126 HAETVAIIEQGLASGEFRSAEPAADIAWRFIALVCGL 162
                 5667899********************9999886444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1452.08
//
Query:       CTQ28322.1  [L=460]
Description: nitrate/nitrite transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-11   42.1  68.0    5.2e-11   42.1  68.0    2.2  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1  68.0   2.9e-15   5.2e-11       2     353 .]      43     419 ..      38     419 .. 0.76
   2 ?   -1.4   7.5     0.048   8.6e+02     119     175 ..     400     457 ..     392     460 .] 0.58

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 2.9e-15
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.....sslwlllvlrvlq 95 
                 ll+af++ + +s+++++l    +  ++++ +++ ll++l +l  a++ +p+++++  fG r + +l+ +++++ +++l +a     +++w++++  +l+
  CTQ28322.1  43 LLLAFCVWMLFSAVAVNLN---KVGFHFTTDQLFLLTALPSLSGAILRVPYSFMVPLFGGRYWTVLSTVILIVPCIWLGVAiqnitTPFWVFIIIALLC 138
                 4556666666666666666...7789999*****************************98887777777777774555544456678899********* PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla..sslg................Wravfyilaivsllafvlfllllpeep 176
                 G++ ga f++++  i+  fpk ++g+a+g+ ++  +lG+ +  +++++++   ++                  + + ++  +++lla v   +++  ++
  CTQ28322.1 139 GFA-GANFASSMGNISFFFPKAKQGSALGVNGGLGNLGVSVMQMVAPAVIflPLFTflgvhgvtqpdgstitLSNAALVWVPLLLLATVA--AWFGMND 234
                 **9.8999999999*************************999666664441344448889999*****999999999*********9886..8887777 PP

       MFS_1 177 perkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrr 275
                  + ++ s +++         +p    +lk+p++w ll  l+l++fg ++ ++  +  +     ++ ++ ++ l  ++ ++ga ++ ++g +sdrlg  r
  CTQ28322.1 235 IAGSKASIRDQ---------LP----VLKRPHMW-LLSLLYLATFGSFIGFSAGFA-MLAKTQFP-AVDILKLAFFGPFIGALARSFGGIISDRLGGVR 317
                 77777777777.........35....888999*9.444444444444443333333.36777888.688888888888888888*************** PP

       MFS_1 276 rlllallllllaalglallavtssavllll.......vlvliGfglgfvfpsllalasdla...ppeeag...............tasglfntagslgg 349
                  +l++++l++l++ +l+l+ + s +  +l+       +++++G+g+g +f +++++  +l+     +++g               +a+g+++ +g++gg
  CTQ28322.1 318 VTLVNFVLMALFTGLLFLTLPGSGSGSFLAfyvvfmgLFLTAGLGSGSTFQMIAVIFRQLTidsV-KQRGgsdeeaqheavtdtaAALGFISAIGAIGG 415
                 ******************99995555555544455535555999999996666666655554420.444445555555666666699999999999999 PP

       MFS_1 350 algp 353
                 ++ p
  CTQ28322.1 416 FFIP 419
                 9876 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.048
       MFS_1 119 rgraigllsagfslGailgp.llggllasslgWravfyilaivsllafvlfllllpee 175
                  + a+g++sa  ++G  + p ++g  la  ++  +++ ++ +++++++++ +l++ ++
  CTQ28322.1 400 TAAALGFISAIGAIGGFFIPkAFGTSLAMTGSPVGAMKVFFVFYVVCVLVTWLVYGRR 457
                 5667777777777777777525555555555566665555555555544444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 3416.88
//
Query:       CTQ28323.1  [L=1246]
Description: nitrate reductase 2 (NRZ), alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.3e-171  569.1   0.0   7.7e-171  568.8   0.0    1.1  1  Molybdopterin    Molybdopterin oxidoreductase
    4.6e-21   74.9   0.0    1.6e-20   73.2   0.0    1.9  2  Molydop_binding  Molydopterin dinucleotide binding domain
    4.7e-17   62.2   4.3    1.6e-16   60.5   4.3    2.0  1  Nitr_red_alph_N  Respiratory nitrate reductase alpha N-termin
      0.004   17.1   0.2      0.013   15.5   0.1    1.9  2  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  568.8   0.0  1.7e-174  7.7e-171       1     431 [.     108     831 ..     108     832 .. 0.99

  Alignments for each domain:
  == domain 1  score: 568.8 bits;  conditional E-value: 1.7e-174
                    B--S-EEEC..................................TTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHH CS
  Molybdopterin   1 RlkyPmvRk..................................qargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslasl 62 
                    RlkyP+ Rk                                   arg+G+Fvr+sW+e ++liaa+++ tik ygpdrvagfs++p+msm+s+a++
     CTQ28323.1 108 RLKYPLARKrlielwrealaqhpdpvlawdsimqdpaktrsykAARGKGGFVRSSWKELNQLIAAANVWTIKHYGPDRVAGFSPIPAMSMVSYAAG 203
                    9*********************************************************************************************** PP

                    HHHHHHTT-EEE-BEECCGGGTTHHHHCHHCCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB-HCGGGC CS
  Molybdopterin  63 kkllsllggknlsfydwyadlppasaqqtigsdsrsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpryaellkfa 158
                     ++lsl+gg++lsfydwy+dlppas+    ++++++++es     d++ns++ii+wGsNv+++r+++ a++  ++++k++k+i+i+p+y+e++k +
     CTQ28323.1 204 TRYLSLIGGTCLSFYDWYCDLPPASP--MTWGEQTDVPESA----DWYNSSYIIAWGSNVPQTRTPD-AHFFTEVRYKGTKTIAITPDYSEVAKLC 292
                    **************************..8999*********....**********************.***********************99*** PP

                    SEEEEEHTTTHHHHHHHHHHHHHHCCCCTCHHHHHHEECHHHCCCCCCCEECCS.......................................... CS
  Molybdopterin 159 dewlaikpgtdaalalamghvilqelkvdkeflrkytygkeetdmpllvtleee.......................................... 212
                    d+wla+k+gtd ala+amghvil+ ++ d+++ ++ +y + +tdmp+lv le +                                          
     CTQ28323.1 293 DQWLAPKQGTDSALAMAMGHVILKAFHLDNPSDYFLNYCRTYTDMPMLVILEPRddgsytpgrmlrasdlldglgesnnpewktvaynsdgelvap 388
                    ************************************************************************************************ PP

                    ................................................................................................ CS
  Molybdopterin 213 ................................................................................................ 212
                                                                                                                    
     CTQ28323.1 389 ngsigfrwgekgkwnleqradgkdvelklslldirdsvvsvgfpyfggnenphfrsvaqspvtlhplpakqltlasgesglvvsvydlilanygld 484
                    ************************************************************************************************ PP

                    ..........................HHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHHHHHHHHCTHCSSTTCEEEEESS. CS
  Molybdopterin 213 ..........................tgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyravinLallvgnvgqpgGgwahlnG. 281
                                              tg+ ++ + +iare+a+ a+kt+g+smii+Gag+nh++++d++yr++inL+ ++g+vgq+gGgw h++G 
     CTQ28323.1 485 rglddvnaakdfaevkaytpawaeqiTGVPRQHIEQIAREFADTAHKTHGRSMIILGAGVNHWYHMDMNYRGMINLLVFCGCVGQSGGGWSHYVGq 580
                    ************************************************************************************************ PP

                    ....................................................................................CTTHHHCHHHHT CS
  Molybdopterin 282 ....................................................................................qlilagaaekvg 293
                                                                                                        +l+++++ae +g
     CTQ28323.1 581 eklrpqtgwlplafaldwsrpprqmnstsyfynhasqwryekltaqellspladaskfsgslidfnvraermgwlpsapqlnvnPLTIKQQAEAAG 676
                    ************************************************************************************************ PP

                    CCTTCCCCCCCTTHHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEESH................HHHHSTTSCCCHCHHH.CSSEEEEEE CS
  Molybdopterin 294 alpvllsvkslkeekikfaaeqpgnlgnfprnlfversnllkssgkkvlyllgn...............npevdhadenevekale.kldlvvvld 373
                      p +l+v+slk++ i+faaeqp+ ++n+prnlf++rsnll+ssgk+++y+l++               ++ev++++  + + a e kldl+v+ld
     CTQ28323.1 677 LSPAELTVQSLKSGDIRFAAEQPDSGKNHPRNLFIWRSNLLGSSGKGHEYMLKYllgtdsgiqgdelgaSDEVKPEEVEWQTAAIEgKLDLLVTLD 772
                    *********************************************************************888888888888777777********* PP

                    SCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEE.EEESSS-STT-BEHHHHHHHHHH CS
  Molybdopterin 374 grltstalyaDiiLPaatwyEkedlytndegrfqh.lkqavsppgeaksdwkIlkaLak 431
                    +r++st+l++Di+LP+atwyEk+d++t+d+++f+h l++av+p++eaksdw+I+k++ak
     CTQ28323.1 773 FRMSSTCLFSDIVLPTATWYEKDDMNTSDMHPFIHpLSAAVDPAWEAKSDWEIYKDIAK 831
                    *********************************************************98 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.4   6.5e+03      30      48 ..     448     466 ..     440     472 .. 0.83
   2 !   73.2   0.0   3.5e-24   1.6e-20       1     106 [.    1086    1200 ..    1086    1205 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.4
                      -EEEEEHHHHHHHT--TT- CS
  Molydop_binding  30 evveinpedAaalGikdGd 48 
                      + v ++p  A++l ++ G+
       CTQ28323.1 448 SPVTLHPLPAKQLTLASGE 466
                      4799*********999997 PP

  == domain 2  score: 73.2 bits;  conditional E-value: 3.5e-24
                       EEEEEE-BTTBSTTTT.TCGCCHHHHCSSS-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC......... CS
  Molydop_binding    1 lrLitgrsldqlhsqt.rtrpvlrlakpepevveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwwe......... 82  
                       l + t+++++ +hs++ ++  +l l++ +p  v++++ dA++lGi+d+d++e ++++G++++ra+v++rv+pG+  m++++++         
       CTQ28323.1 1086 LNFLTPHQKWGIHSTYsENLLMLTLSRGGP-IVWLSETDAKELGIEDNDWIEAFNANGALTARAVVSQRVPPGMTMMYHAQERimnipgsev 1176
                       5689************99999999999999.**************************************************99********* PP

                       .....S-GHCTS--SCSTTT--CS CS
  Molydop_binding   83 agekggnaNaltddatdplsgtpe 106 
                       +g++gg  N++t+   +p++ +  
       CTQ28323.1 1177 TGRRGGIHNSVTRVCPKPTHMIGG 1200
                       ************877777766555 PP

>> Nitr_red_alph_N  Respiratory nitrate reductase alpha N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   4.3   3.5e-20   1.6e-16       1      38 []       3      40 ..       3      40 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 3.5e-20
  Nitr_red_alph_N  1 hlldrlrffrkkkekfadgHgetteedReWEdaYRrRW 38
                     +lldr+r+f++k e+fa+gHg++ + +R+WEd+YR+RW
       CTQ28323.1  3 KLLDRFRYFKQKGETFANGHGQVYNNNRDWEDSYRQRW 40
                     59************************************ PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   2.8e-06     0.013      10      54 ..      53     104 ..      44     105 .. 0.78
   2 ?   -2.7   0.0       1.4   6.2e+03      28      48 ..    1175    1196 ..    1160    1198 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.8e-06
                     SBTT--EEEEEEETTEEE.......EEEE-TTSTTTTT---HHHHTCHHCCC CS
  Molybdop_Fe4S4  10 yCgvgCglevhvkdgkiv.......kvegdpdhpvnegrlCvKGrtllervy 54 
                     +C+ +C+ +++vk+g ++       + ++ pd p  e r C++G++   ++y
      CTQ28323.1  53 NCTGSCSWKIYVKNGLVTwetqqtdYPRTRPDLPNHEPRGCPRGASYSWYLY 104
                     8*****************5555555555556666666********9877766 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.4
                      EEEE-TTSTTTT.T---HHHHT CS
  Molybdop_Fe4S4   28 kvegdpdhpvne.grlCvKGrt 48  
                      +v g + +  n   r+C+K  +
      CTQ28323.1 1175 EVTGRRGGIHNSvTRVCPKPTH 1196
                      5666666666665799999655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 8402.52
//
Query:       CTQ28324.1  [L=514]
Description: nitrate reductase 2 (NRZ), beta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.9e-38  128.6   5.3    1.9e-37  127.4   5.3    1.7  1  Fer4_11         4Fe-4S dicluster domain
    2.3e-29  100.9   0.0    4.3e-29  100.0   0.0    1.5  1  Nitr_red_bet_C  Respiratory nitrate reductase beta C-terminal
    1.7e-08   34.5  15.8    9.1e-06   25.7   3.8    3.3  3  Fer4_10         4Fe-4S dicluster domain
      9e-08   32.6  17.8    4.9e-05   23.8   5.1    3.6  3  Fer4_7          4Fe-4S dicluster domain
    8.4e-06   25.6  18.8     0.0056   16.7   0.2    3.9  4  Fer4_6          4Fe-4S binding domain
    0.00096   19.3  18.3     0.0078   16.4   4.2    3.3  3  Fer4_9          4Fe-4S dicluster domain
  ------ inclusion threshold ------
       0.01   15.6  24.0      0.016   15.0   2.0    4.9  4  Fer4            4Fe-4S binding domain
       0.01   15.9  22.0      0.014   15.5   1.9    4.0  3  Fer4_2          4Fe-4S binding domain
      0.018   15.5   8.9      0.036   14.6   0.2    3.5  3  Fer4_13         4Fe-4S single cluster domain of Ferredoxin I
      0.023   15.4   5.9        2.2    9.1   0.1    3.3  3  Fer4_15         4Fe-4S single cluster domain
      0.042   14.0  21.4      0.076   13.2   4.1    3.1  3  Fer4_21         4Fe-4S dicluster domain
       0.16   12.4   0.1       0.16   12.4   0.1    3.8  3  Fer4_8          4Fe-4S dicluster domain
       0.19   12.3  15.0        1.4    9.5   0.2    3.9  3  Fer4_17         4Fe-4S dicluster domain
       0.26   11.9  24.6       0.22   12.1   0.9    4.1  3  Fer4_4          4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Fer4_11  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   5.3   1.5e-40   1.9e-37       2      99 ..     175     271 ..     174     272 .. 0.98

  Alignments for each domain:
  == domain 1  score: 127.4 bits;  conditional E-value: 1.5e-40
     Fer4_11   2 ewlflpeqCrhCleppCvasapseaivkdeetGaVlldektkkeevrevveacPykivrkneetgkvekCdmcldrveaGllpacvescptgalnfgd 99 
                 ++++lp+ C+hCl+p+Cva++ps+ai+k+ee+G+Vl+d+++++ ++r+++++cPyk+++ n+++gk+ekC +c++r+e+G++++c+e+c+++++++g+
  CTQ28324.1 175 FMMYLPRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCR-GWRMCISGCPYKKIYFNWKSGKSEKCIFCYPRIESGQPTVCSETCVGRIRYLGV 271
                 699***************************************9.***************************************************996 PP

>> Nitr_red_bet_C  Respiratory nitrate reductase beta C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0   0.0   3.4e-32   4.3e-29       1      80 [.     358     436 ..     358     437 .. 0.97

  Alignments for each domain:
  == domain 1  score: 100.0 bits;  conditional E-value: 3.4e-32
  Nitr_red_bet_C   1 LsPvvsaveagkldeeadgllpaveslRiPveYLAnLltAGdeepvekaLkrllamRaymRaknvegeadeavleevglt 80 
                     LsP++s+++ag+l  ++ ++lpaveslRiPv+YLAnLl+AGd+ pv +aLkr++amR+y+R+++veg +d++++eevgl+
      CTQ28324.1 358 LSPIQSVADAGGL-PSNGNILPAVESLRIPVQYLANLLSAGDTGPVLRALKRMMAMRHYKRSQTVEGVTDTRAIEEVGLS 436
                     9************.66699***********************************************************97 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2   5.6e-05     0.071       2      22 ..       9      27 ..       8      59 .. 0.78
   2 !   25.7   3.8   7.1e-09   9.1e-06       6      56 .]     180     227 ..     175     227 .. 0.94
   3 ?    3.0   0.7     0.088   1.1e+02      39      55 ..     237     262 ..     230     263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.6e-05
     Fer4_10  2 vvidddtCirCgkCvkaCPad 22
                +v++ d+Ci+C +C   C  +
  CTQ28324.1  9 MVLNLDKCIGCHTCSVTC--K 27
                68999*************..3 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 7.1e-09
     Fer4_10   6 ddtCirCg..kCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 +  C +C    Cv+ CP+     ga+++++e++ v ++ +kC g+ +C++ CP
  CTQ28324.1 180 PRLCEHCLnpSCVATCPS-----GAIYKREEDGIVLIDQDKCRGWRMCISGCP 227
                 678****9899*******.....*****************************9 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.088
     Fer4_10  39 rkkvekCtgc.........gaCveaC 55 
                 ++k+ekC++c         + C e C
  CTQ28324.1 237 SGKSEKCIFCypriesgqpTVCSETC 262
                 6799******7777776666999998 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.2   5.6e-05     0.072       1      18 [.      15      32 ..      15      65 .. 0.76
   2 !   23.8   5.1   3.8e-08   4.9e-05       2      50 ..     183     228 ..     182     230 .. 0.89
   3 !    7.0   6.5    0.0069       8.8       1      48 [.     215     262 ..     215     266 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.6e-05
      Fer4_7  1 rCigCgaCvaaCpvkaie 18
                +CigC+ C ++C++ + +
  CTQ28324.1 15 KCIGCHTCSVTCKNVWSS 32
                7***********865543 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 3.8e-08
      Fer4_7   2 CigCg..aCvaaCpvkaieldeeenekgtekveidpekClgCgaCvavCPt 50 
                 C +C    Cva+Cp++ai+ +ee   +    v id++kC g ++C++ CP+
  CTQ28324.1 183 CEHCLnpSCVATCPSGAIYKREE---D--GIVLIDQDKCRGWRMCISGCPY 228
                 99995559************987...3..5899*****************8 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0069
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenekgtekveidpekClgC.........gaCvavC 48 
                 +C g + C + Cp+k i+++ +          +++ekC++C         ++C ++C
  CTQ28324.1 215 KCRGWRMCISGCPYKKIYFNWK---------SGKSEKCIFCypriesgqpTVCSETC 262
                 688889*************987.........35777888885555555555788777 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   1.1    0.0012       1.5       7      19 ..      14      26 ..      11      35 .. 0.91
   2 !   10.2   2.4    0.0005      0.64       8      24 .]     182     200 ..     179     200 .. 0.88
   3 !   16.7   0.2   4.4e-06    0.0056       1      22 [.     208     229 ..     208     232 .. 0.91
   4 ?   -2.7   0.1       5.7   7.4e+03       6      13 ..     240     247 ..     239     248 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
      Fer4_6  7 dkCigCgdCvrvC 19
                dkCigC  C + C
  CTQ28324.1 14 DKCIGCHTCSVTC 26
                9***********9 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0005
      Fer4_6   8 kCigC.gd.CvrvCPegai 24 
                 +C +C ++ Cv+ CP gai
  CTQ28324.1 182 LCEHClNPsCVATCPSGAI 200
                 8****666*********98 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 4.4e-06
      Fer4_6   1 vveidpdkCigCgdCvrvCPeg 22 
                 +v id+dkC g + C++ CP++
  CTQ28324.1 208 IVLIDQDKCRGWRMCISGCPYK 229
                 588*****************85 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 5.7
      Fer4_6   6 pdkCigCg 13 
                  +kCi C+
  CTQ28324.1 240 SEKCIFCY 247
                 58999786 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.2   0.00021      0.27       1      14 [.      15      28 ..       6      52 .. 0.79
   2 !   16.4   4.2   6.1e-06    0.0078       2      49 ..     183     229 ..     182     232 .. 0.89
   3 ?   -0.6   7.8       1.2   1.5e+03       1      46 [.     215     262 ..     215     266 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
      Fer4_9  1 kCtgCgaCveaCpa 14
                kC+gC++C   C++
  CTQ28324.1 15 KCIGCHTCSVTCKN 28
                68888888888864 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 6.1e-06
      Fer4_9   2 CtgCga..CveaCpagvvvedaaerkarlraaseeaCigCgaCveaCpkg 49 
                 C  C +  Cv+ Cp+g++ +++  +++ ++++   +C g + C+  Cp +
  CTQ28324.1 183 CEHCLNpsCVATCPSGAIYKREEDGIVLIDQD---KCRGWRMCISGCPYK 229
                 99997666********************9875...8************86 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.2
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraaseeaCigCga.........CveaC 46 
                 kC g + C++ Cp++ +   ++ +k +       +Ci+C           C e C
  CTQ28324.1 215 KCRGWRMCISGCPYKKIYFNWKSGKSE-------KCIFCYPriesgqptvCSETC 262
                 5778889******99999999988877.......599998777777777777777 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   2.0   1.2e-05     0.016       2      18 ..      10      26 ..       9      28 .. 0.89
   2 ?    8.2   0.4    0.0017       2.2      14      24 .]     191     201 ..     190     201 .. 0.92
   3 ?    4.5   0.3     0.027        34       2      20 ..     210     228 ..     209     229 .. 0.88
   4 ?    2.6   0.3      0.11   1.4e+02       6      11 ..     241     246 ..     239     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
                EEETTTSSS-THHHHHS CS
        Fer4  2 videekCigCGaCvevC 18
                v + +kCigC +C   C
  CTQ28324.1 10 VLNLDKCIGCHTCSVTC 26
                6799**********999 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0017
                 HHHHSTTTEEE CS
        Fer4  14 CvevCPvgAIt 24 
                 Cv  CP gAI+
  CTQ28324.1 191 CVATCPSGAIY 201
                 **********6 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.027
                 EEETTTSSS-THHHHHSTT CS
        Fer4   2 videekCigCGaCvevCPv 20 
                  id++kC g   C++ CP+
  CTQ28324.1 210 LIDQDKCRGWRMCISGCPY 228
                 59*****999999999997 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.11
                 TTSSS- CS
        Fer4   6 ekCigC 11 
                 ekCi+C
  CTQ28324.1 241 EKCIFC 246
                 9***** PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   1.9   1.1e-05     0.014       3      20 ..       9      26 ..       7      28 .. 0.87
   2 ?    7.5   1.8    0.0037       4.8       5      21 ..     178     196 ..     175     197 .. 0.85
   3 ?    6.3   0.1    0.0087        11       3      22 .]     209     228 ..     207     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
      Fer4_2  3 vvvdtdrCigCgaCvsaC 20
                +v + d+CigC +C   C
  CTQ28324.1  9 MVLNLDKCIGCHTCSVTC 26
                57899*********8889 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0037
      Fer4_2   5 vdtdrCigCg..aCvsaCP 21 
                 + ++ C +C   +Cv  CP
  CTQ28324.1 178 YLPRLCEHCLnpSCVATCP 196
                 66889****889******* PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0087
      Fer4_2   3 vvvdtdrCigCgaCvsaCPa 22 
                 v +d d+C g + C+s CP+
  CTQ28324.1 209 VLIDQDKCRGWRMCISGCPY 228
                 789******999******95 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   2.8e-05     0.036       2      29 ..      12      39 ..      11      61 .. 0.80
   2 ?    1.6   0.2      0.32     4e+02      11      26 ..     190     207 ..     183     211 .. 0.75
   3 ?    2.6   0.5      0.16     2e+02       1      17 [.     211     227 ..     211     229 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.8e-05
     Fer4_13  2 DrdtCiacgaCvelaPdvFeeddeggas 29
                + d+Ci+c++C  ++ +v    +  +++
  CTQ28324.1 12 NLDKCIGCHTCSVTCKNVWSSREGMEYA 39
                569***************9988865554 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.32
     Fer4_13  11 aCvelaPd..vFeeddeg 26 
                 +Cv+++P   +++++++g
  CTQ28324.1 190 SCVATCPSgaIYKREEDG 207
                 699999954488888775 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.16
     Fer4_13   1 VDrdtCiacgaCvelaP 17 
                 +D+d+C +   C + +P
  CTQ28324.1 211 IDQDKCRGWRMCISGCP 227
                 8**************99 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1    0.0017       2.2       3      23 ..      11      31 ..       9      54 .. 0.82
   2 ?   -1.2   0.2       2.7   3.5e+03      56      64 ..     192     200 ..     190     201 .. 0.83
   3 ?    7.7   0.2    0.0047         6       1      19 [.     209     227 ..     209     245 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0017
     Fer4_15  3 vDrdaCigcglCvaeapevfe 23
                ++ d+Cigc  C   +++v  
  CTQ28324.1 11 LNLDKCIGCHTCSVTCKNVWS 31
                6789************98865 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.7
     Fer4_15  56 araCPvdAI 64 
                 +++CP +AI
  CTQ28324.1 192 VATCPSGAI 200
                 579**9999 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0047
     Fer4_15   1 VvvDrdaCigcglCvaeap 19 
                 V +D+d+C g  +C+  +p
  CTQ28324.1 209 VLIDQDKCRGWRMCISGCP 227
                 78************99886 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.0     7e-05      0.09       4      20 ..      12      28 ..       8      35 .. 0.81
   2 ?   13.2   4.1   5.9e-05     0.076       9      53 ..     184     228 ..     180     232 .. 0.72
   3 ?   -2.9   1.8       6.1   7.8e+03       8      11 ..     243     246 ..     239     268 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7e-05
     Fer4_21  4 dedkCigCgkCliaCed 20
                + dkCigC  C ++C++
  CTQ28324.1 12 NLDKCIGCHTCSVTCKN 28
                56889999999999975 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 5.9e-05
     Fer4_21   9 igC..gkCliaCedtshqaieidaktvl.kvvedeCvGCnlCssvCPv 53 
                  +C   +C+ +C+     ai + ++  +  + +d+C G  +C+s CP 
  CTQ28324.1 184 EHClnPSCVATCP---SGAIYKREEDGIvLIDQDKCRGWRMCISGCPY 228
                 4552247999**9...47886666655505569**************6 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 6.1
     Fer4_21   8 CigC 11 
                 Ci C
  CTQ28324.1 243 CIFC 246
                 4444 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00013      0.16       2      19 ..      13      31 ..      12      66 .. 0.73
   2 ?   -2.2   6.6       4.5   5.8e+03      51      64 ..     183     198 ..     141     231 .. 0.65
   3 ?   -2.3   0.2       4.8   6.2e+03      10      15 ..     257     262 ..     239     300 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
      Fer4_8  2 lekCieCgaCqsaCp.vlr 19
                l+kCi+C  C  +C  v++
  CTQ28324.1 13 LDKCIGCHTCSVTCKnVWS 31
                6899999999999963333 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.5
      Fer4_8  51 Cttcga..CtevCpvg 64 
                 C +c +  C+  Cp g
  CTQ28324.1 183 CEHCLNpsCVATCPSG 198
                 4444434455555543 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 4.8
      Fer4_8  10 aCqsaC 15 
                  C ++C
  CTQ28324.1 257 VCSETC 262
                 455555 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2    0.0011       1.4      43      57 ..      13      27 ..       3      55 .. 0.82
   2 ?    7.6   0.5    0.0044       5.7       2      24 ..     183     207 ..     182     211 .. 0.85
   3 ?    1.0   3.7      0.51   6.5e+02       1      18 [.     215     232 ..     215     264 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0011
     Fer4_17 43 aslCieCgeCerkCP 57
                 ++Ci+C+ C+  C 
  CTQ28324.1 13 LDKCIGCHTCSVTCK 27
                567778888777775 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0044
     Fer4_17   2 CiqCgy..ClpeCpsyeaydnepkk 24 
                 C +C    C++ Cps+++y+ e++ 
  CTQ28324.1 183 CEHCLNpsCVATCPSGAIYKREEDG 207
                 99999667***********998875 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.51
     Fer4_17   1 rCiqCgyClpeCpsyeay 18 
                 +C++ ++C+  Cp+ ++y
  CTQ28324.1 215 KCRGWRMCISGCPYKKIY 232
                 699999*******97775 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.4    0.0018       2.3       2      15 ..      14      27 ..      13      38 .. 0.90
   2 ?    4.9   2.8     0.034        44       8      17 .]     189     198 ..     181     198 .. 0.73
   3 ?   12.1   0.9   0.00017      0.22       1      16 [.     213     228 ..     213     229 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0018
      Fer4_4  2 erCigCgsCvaaCP 15
                ++CigC  C  +C+
  CTQ28324.1 14 DKCIGCHTCSVTCK 27
                99*******99996 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.034
      Fer4_4   8 gsCvaaCPqg 17 
                 +sCva+CP+g
  CTQ28324.1 189 PSCVATCPSG 198
                 49******86 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00017
      Fer4_4   1 qerCigCgsCvaaCPq 16 
                 q++C g + C++ CP+
  CTQ28324.1 213 QDKCRGWRMCISGCPY 228
                 79*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3870.11
//
Query:       CTQ28325.1  [L=231]
Description: nitrate reductase 2 (NRZ), delta subunit (assembly subunit) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-12   46.4   0.5    9.6e-12   45.1   0.2    1.8  2  Nitrate_red_del  Nitrate reductase delta subunit


Domain annotation for each model (and alignments):
>> Nitrate_red_del  Nitrate reductase delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.2   5.4e-16   9.6e-12      22     135 ..      44     151 ..      22     153 .. 0.79
   2 ?   -0.0   0.0     0.045   8.1e+02      32      72 ..     146     183 ..     127     204 .. 0.66

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 5.4e-16
  Nitrate_red_del  22 ededllelaaeYtrLFlgpgrrsasPyesvYlsekkgllfgestlevrefyrqaglevaeefneppDHlaveLeflahLaereaeaeea.eeae 114
                        + ll+ +ae++++F  ++ +s++++e v+++    + +g++ +++ + y+qagl++  +++e pDHl+++Le+l+ L  +ea   e  ++ +
       CTQ28325.1  44 LTAPLLDRQAEWCEVFERGRATSLLLFEHVHAE---SRDRGQAMVDLMNQYQQAGLQI--DCRELPDHLPLYLEYLSILPPAEAR--EGlQNIA 130
                      589999***************************...4669****************85..56667************99976664..4456777 PP

  Nitrate_red_del 115 alleaqkafleehllpWlpef 135
                       +l+ +   l+++  p+++ f
       CTQ28325.1 131 PILALIGGRLKQRACPYYQLF 151
                      777777777777777777655 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.045
  Nitrate_red_del  32 eYtrLFlgpgrrsasPyesvYlsekkgllfgestlevrefy 72 
                       Y++LF++    + sP  s  +++   ++ ge++ + r+++
       CTQ28325.1 146 PYYQLFDALLALAKSPLTSDSVTK---QVAGEKRDDTRQAL 183
                      577788877777777777777773...44444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1935.06
//
Query:       CTQ28326.1  [L=226]
Description: nitrate reductase 2 (NRZ), gamma subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-79  264.5  11.6    7.2e-79  264.4  11.6    1.0  1  Nitrate_red_gam  Nitrate reductase gamma subunit


Domain annotation for each model (and alignments):
>> Nitrate_red_gam  Nitrate reductase gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.4  11.6     4e-83   7.2e-79       1     219 []       6     225 ..       6     225 .. 0.99

  Alignments for each domain:
  == domain 1  score: 264.4 bits;  conditional E-value: 4e-83
  Nitrate_red_gam   1 ntllfvvlPYvalavlvvgsllryrydqftwtskSsqllekklLrlgsplFHvGilvvllgHlvGlliPksvtealgvseelyqllalvaGlia 94 
                      n++++ ++PY++ +v++vgs+lry+y q+tw+++Ssq+l+k+ + l s+lFH+Gil +++gHl+G+l+P++v++++ +  +++ql+a+++G+i+
       CTQ28326.1   6 NVFFYDIYPYLCGTVFLVGSWLRYDYGQYTWRASSSQMLDKRGMVLWSNLFHIGILGIFFGHLFGMLTPHWVYSWF-LPMSQKQLMAMILGGIC 98 
                      679*************************************************************************.***************** PP

  Nitrate_red_gam  95 gvlalvGlllLllRRltnkrvraatsasDkvvlllLllqillGllttlvsaldy.gseretispwlrslltlqpd.aellaevplifklHvllg 186
                      gvl+lvG + Ll+RRltn+r+ra+++++D+++l++Ll+q++lGl+t+++sa++  gse+ ++++w++ ++t++    ++l +v +i+++H++lg
       CTQ28326.1  99 GVLTLVGGIGLLMRRLTNPRIRATSTTADILILCILLIQCALGLTTIPFSAQHPdGSEMLKLVDWAQAVVTFHGGaSAHLDGVAWIYRVHLVLG 192
                      ****************************************************999*******************98999*************** PP

  Nitrate_red_gam 187 lllfalfPFtrLvHvlsapleYllrpyqvvrsr 219
                      +++f++fPFtrLvHv+sap+eY++r+yqvvrsr
       CTQ28326.1 193 MTIFLIFPFTRLVHVWSAPVEYFTRRYQVVRSR 225
                      *******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1830.21
//
Query:       CTQ28327.1  [L=281]
Description: N-hydroxyarylamine O-acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-82  276.1   0.0    3.4e-82  275.9   0.0    1.0  1  Acetyltransf_2  N-acetyltransferase
  ------ inclusion threshold ------
      0.023   14.5   0.0      0.039   13.7   0.0    1.4  1  SnoaL           SnoaL-like polyketide cyclase


Domain annotation for each model (and alignments):
>> Acetyltransf_2  N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.9   0.0   3.8e-86   3.4e-82       2     237 ..      22     256 ..      21     259 .. 0.98

  Alignments for each domain:
  == domain 1  score: 275.9 bits;  conditional E-value: 3.8e-86
                     HHHHHHHHHHHHHHS-EE-HHHHTT-----SHHHHHHHHTTST--B-HHHHHHHHHHHHHHTT-EEEEEEEEEETTGGSSSSSSCEEEEEEEEET CS
  Acetyltransf_2   2 LetLrellqahlraiPFENldvllgeeieldlealfdklVkkkRGGyCyelNgLlarvLkelGFevtllagrvvvkaeeaastertHllllVtid 96 
                     ++tLrel+ +h+ aiPFENldvll +ei+ld  al +kl++++RGGyC+e+NgLl+r+L+e+GF+v++l+grvv  ++++ +++rtH lllV+++
      CTQ28327.1  22 IDTLRELHLQHNSAIPFENLDVLLPREIHLDDGALEEKLIAARRGGYCFEQNGLLERALREIGFNVRSLLGRVVLANPPQ-MPPRTHRLLLVEVA 115
                     89*****************************************************************************8.************** PP

                     TEEEEE-SSSSCG.-SS-EESSTTCEEEESSEEEEEEEETTCEEEEEEEETTEEEEEEEEEEEEB-HHHHHHHHHHHHHSTT-HHHCS-EEEEEE CS
  Acetyltransf_2  97 getylvDvGFGgstltaplelesgkdqqtthgifrlveeeenewvlekkkreewvklYsftleprqiedfeeandylstspdsvftkkllcslat 191
                     ge++++DvGFGg+tltap++l ++  qqt+hg +rlv+e++ ew+l+ +++e+w+++Y+f+l  ++ +d++++n++ +++p+s+f+++ll+++++
      CTQ28327.1 116 GERWIADVGFGGQTLTAPIKLLADIPQQTPHGSYRLVHEGD-EWTLQFNHHEHWQSMYHFDLGRQYASDYVMGNFWSAHWPQSHFRHHLLMCRHL 209
                     *****************************************.***************************************************** PP

                     TT.EEEEEETTEEEEEETTSEEEEEEE-SHHHHHHHHHHTT----SC CS
  Acetyltransf_2 192 pd.grltLvgrtlterekdgaleeiklltdeeleevlkekFgielea 237
                     pd g++tL++ ++t+ e+++ +e+ +  + ++l+e+l+++Fg+ +++
      CTQ28327.1 210 PDgGKMTLTNFHFTHWENNHVVEKVDFADVSALYEALQTRFGLGVDD 256
                     **99************88888**********************9985 PP

>> SnoaL  SnoaL-like polyketide cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.4e-06     0.039      89     125 ..     209     245 ..     198     246 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.4e-06
                 E-TT-EEEEEEEEEEEEETTEEEEEEEEECHHHHHHH CS
       SnoaL  89 pptGkkvkfeeitllrvedGkIveewdviDllgllrQ 125
                  p G k++++ +++ ++e+  +ve+ d++D  +l+  
  CTQ28327.1 209 LPDGGKMTLTNFHFTHWENNHVVEKVDFADVSALYEA 245
                 58999***************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2229.78
//
Query:       CTQ28328.1  [L=570]
Description: ABC transporter, permease protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-26   91.9  37.2    1.4e-14   54.3  14.8    4.0  5  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   1.1     0.024   4.3e+02     156     179 ..      27      50 ..      14      95 .. 0.62
   2 !   54.3  14.8   7.8e-19   1.4e-14       1     179 [.      96     284 ..      96     290 .. 0.87
   3 ?   -0.2   0.7     0.038   6.9e+02      48      79 ..     304     336 ..     300     338 .. 0.85
   4 ?   -0.7   0.2     0.058     1e+03     109     168 ..     327     381 ..     323     385 .. 0.80
   5 !   51.9  14.4   4.1e-18   7.3e-14       3     184 ..     384     569 ..     382     570 .] 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.024
  BPD_transp_1 156 ggvlalviavlllnlvadilqrll 179
                   g++la+++++++l lv+ +lq+++
    CTQ28328.1  27 GATLAALVMLVALPLVFILLQAIF 50 
                   444444444444444444444443 PP

  == domain 2  score: 54.3 bits;  conditional E-value: 7.8e-19
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf...........vilsilghlilpviillllsaapyvrlirraalrslpkdlvea 86 
                   g++lGil + +++ +l +l + l+ +++ +P+++ a+ + l++             l++l ++  ++++++++ ++p+v++ +++ l +  + l  +
    CTQ28328.1  96 GLPLGILRG-MFSLPLPRLWDLLFLIPFLTPPYISALSWMLALqsqgylqqltgWQLNDLLFSRSGIVLVMTFNIFPVVYFAVSRSLLASGTRLAVV 191
                   799******.999999******************8888777778999*****99999999999999******************************* PP

  BPD_transp_1  87 aralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG.lgtllleailgydyseis..nggvlalviavlllnlvadilqrll 179
                   ar+ Gas w+ f++v+lP++ p +++g++laf++++ ++ ++  lgs  G +   +l++ +++ ++ +     g++ l ++++++ l+a +lqr l
    CTQ28328.1 192 ARVHGASAWRAFWHVTLPMLSPALAAGMLLAFTLAIEEFGVPAALGSRAGvV---MLTVGIEKKLADWPvdLPGAALLSLLLMAVALFAWWLQRRL 284
                   **********************************************997752...33333344443333333788899999999999999998876 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.038
  BPD_transp_1  48 ilghlilp.viillllsaapyvrlirraalrsl 79 
                   +lg++ lp v+++++++ +++ +  ++++l s+
    CTQ28328.1 304 SLGWMTLPaVLAMAAVGGLAVGVPAVSMMLTSV 336
                   689999999999999999999888888888775 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.058
  BPD_transp_1 109 piitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlll 168
                   p+++ ++ +++g l g v +e ++    l  +   + ++ d  +++ g++l l++  +l+
    CTQ28328.1 327 PAVSMMLTSVMGTLSGGVSVENVT----LRHFAALFDQQGDALSAL-GTSLSLALGSALI 381
                   778899999999999999999999....999999999999988888.6666666655554 PP

  == domain 5  score: 51.9 bits;  conditional E-value: 4.1e-18
  BPD_transp_1   3 llGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf...vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGas 93 
                    lG+laa   + r+ k++ +++ l+ ++ +lP +v+++ l+l+    ++  + +++ +++++ +   ++p+ ++ + +alr+l  +l+ aar+ Gas
    CTQ28328.1 384 ALGLLAAwlvMVRKIKGRGMVDALSLMPAALPGVVVGVGLILLWnqpFWPRSPYNTLWMLLLSYCCLLLPWPVRYVGSALRQLGPNLEPAARVHGAS 480
                   589********************************88888866689*************************************************** PP

  BPD_transp_1  94 rwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis.nggvlalviavlllnlvadilqrlldprvr 184
                   + q +r +vlP+++p +++ ++++f+ +  + v  ++l    + gt+++ + +++++ ++s   g++++ + +l  ++++    +l ++r+r
    CTQ28328.1 481 PLQALRLIVLPLVFPALLAAMLMVFAVASRELVTSLLLS---PAGTQTVAVFIWRQFEQGSvGQGMAMASLTLLTGLVLMLTALALMQRRTR 569
                   **************************9999998888888...69*****************7667777777777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3862.09
//
Query:       CTQ28329.1  [L=322]
Description: putative ABC transporter substrate binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-32  111.5   1.1    5.8e-32  111.1   1.1    1.1  1  SBP_bac_6   Bacterial extracellular solute-binding protein
    9.1e-28   97.6   5.3    1.2e-27   97.1   5.3    1.1  1  SBP_bac_11  Bacterial extracellular solute-binding protein
    1.3e-25   90.8   2.8    1.5e-25   90.6   2.8    1.1  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    2.1e-17   64.1   6.3    2.8e-17   63.7   6.3    1.1  1  SBP_bac_1   Bacterial extracellular solute-binding protein
     0.0064   16.2   1.0       0.65    9.6   1.0    2.6  1  PBP_like_2  PBP superfamily domain
  ------ inclusion threshold ------
      0.012   15.7   0.0        3.5    7.9   0.0    2.7  3  Rhomboid_N  Cytoplasmic N-terminal domain of rhomboid serine 
      0.037   14.2   0.0      0.076   13.2   0.0    1.5  1  PPR_2       PPR repeat family


Domain annotation for each model (and alignments):
>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   1.1   2.2e-35   5.8e-32       1     232 [.      74     296 ..      74     304 .. 0.87

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 2.2e-35
   SBP_bac_6   1 nplpdlilsfdkdflekfieeglfqpldpanlpnvnkdfaeeglkdpdgkyypygvgplvlavnkdrlkgrpvPksWaDLldPeykgkvalpgnngsdl 99 
                 np +d+++s + d  e + + g + p+ +an+++v+     ++lk    +y++ gv++l+++ n++  +  p Pk W DL++P +k+kv+ p+++   +
  CTQ28329.1  74 NPQADVLISASWDTAEDLHQRGWLLPFASANADQVP-----ANLKSA--DYIAQGVSALGIVWNSKSGT--PEPKEWRDLTQPAFKDKVTTPDPAL--S 161
                 799*********************************.....888887..9*****************65..45**********************7..5 PP

   SBP_bac_6 100 fealllalykdfg.edgvkkllrnlkanlhpaq..mvkaagslesgepavsvvpyffadilpekkkgknlkvvwPedGalvspifmlvkkg.kkkelak 194
                  + l l +  ++   d++++l+ +lk+n+  +   + +a++++ +g   + v  + ++  + + ++g +lkv+ P +G+++ p  m++ k  +++ +ak
  CTQ28329.1 162 GASLDLLIGLQNSmGDQAWQLFDDLKKNGMVVSgpNAQAVTPVMQGA-KAAVFGAVDYVSYGNIQQGESLKVIFPASGTVIAPRPMMILKTsQHPGEAK 259
                 5555555555555579******************************7.55555555555555555567******************************* PP

   SBP_bac_6 195 afidfllspevqailakaggvfPvvtnpavlnelpega 232
                 afid+ lspe+qa +a+a++ +P+  ++a++ +l +  
  CTQ28329.1 260 AFIDYVLSPEGQAKVADAWL-MPARRDVAAKRPLLDAL 296
                 *******************9.***98777777776655 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   5.3   4.7e-31   1.2e-27       1     226 [.      28     276 ..      28     278 .. 0.89

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 4.7e-31
                 .EEEE-SSTHHHHHHHHHHHHHHH---EEEEESSHHHHHHHHHHH.....-SEEEESSH.HHHHHHHHGGGGG...............GG-EEEEEEEE CS
  SBP_bac_11   1 ltvaaagslaaalrelaaaFeahtgvkvevsaggsgklarqiadga...rpDvwipassawlellaaaglvqa...............esavplasspl 81 
                 ltv++ag      + la  Fe++tgvkv+v  +  gk+++++++++   ++Dv+i+as +  e+l+++g + +               +++ +   s l
  CTQ28329.1  28 LTVYTAGP-GSLAKSLASGFEQQTGVKVTVFQATTGKVMARLEAEQanpQADVLISASWDTAEDLHQRGWLLPfasanadqvpanlksADYIAQGVSAL 125
                 78999988.89999****************************8887788*******************999999999********98888888888999 PP

                 EEEESTT-TT.---SHHHHHHSS-..-EEEE--T-TTTTHH.HHHHGGG.--..HHHHHHHHHT.EEEEESSHHHHHHHHHTTT-SEEEEEHHHHH... CS
  SBP_bac_11  82 viavpkgnpk.kikgwadLlkpgl..klavadPttspsGlaalalleaa.ga..qellkalekk.vvklgessrqlltaveageadagivyeseakaa. 172
                  i+ +  +    +k w dL++p +  k+ ++dP+ s++ l  l  l+++ g+   +l++ l+k+ +v++g+   q++t v++g  +a++++   + +  
  CTQ28329.1 126 GIVWNSKSGTpEPKEWRDLTQPAFkdKVTTPDPALSGASLDLLIGLQNSmGDqaWQLFDDLKKNgMVVSGP-NAQAVTPVMQGAKAAVFGAVDYVSYGn 223
                 99998888543899**********888*************8888888432434445999999996666666.599999***************996665 PP

                 .HSTTSSEEEE--TTT--...EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHH CS
  SBP_bac_11 173 .engdkleavylpeglnldpldypaavlkkaakreaAraFlafLrspeaqailrk 226
                  ++g+ l+++ +  g+++  ++ p+++lk+++++ +A+aF+++++spe+qa +++
  CTQ28329.1 224 iQQGESLKVIFPASGTVI--APRPMMILKTSQHPGEAKAFIDYVLSPEGQAKVAD 276
                 67899************7..9*****************************98765 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   2.8   5.9e-29   1.5e-25       2     270 ..      42     289 ..      41     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 5.9e-29
                 HHHHHHHH-TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH-HHHHHTT--TS.----EEEEEEE-EEEEE CS
   SBP_bac_8   2 lakefekktgvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnlddltdalaavgydgklygvPyasetpyvliyn 100
                 la+ fe++tgvkv+v +a ++++++ l a+ a  +a d ++++a+ d +  l ++g+l ++++  n+d++++ l++++y    +gv    +   ++++n
  CTQ28329.1  42 LASGFEQQTGVKVTVFQATTGKVMARLEAEQANPQA-D-VLISASWDTAEDLHQRGWLLPFAS-ANADQVPANLKSADYIA--QGV----SA-LGIVWN 130
                 5778*************************9987666.4.366666788999***********6.8***********99755..444....55.699999 PP

                 HHHHHHS.---BHHHHHHHHHHHHHH-SEGG--.-GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE.-S..--SSTTTTTSBSEEEE-T CS
   SBP_bac_8 101 kdllekaedpktwdellaaakklkgkfglpdpa.sgwlqaallakdgksldddggkdglkealellkklkdngkty.dtgadavsefanGevaftings 197
                  +       pk w +l++  +++k k+++pdpa sg  + +l+  ++ s+         ++a++l+++lk+ng ++ + +a+av  + +G  a++++  
  CTQ28329.1 131 SKSGT--PEPKEWRDLTQ--PAFKDKVTTPDPAlSGASLDLLIG-LQNSMG--------DQAWQLFDDLKKNGMVVsGPNAQAVTPVMQGAKAAVFGAV 216
                 77766..49*********..*************55777777777.755554........79************99834689**************9977 PP

                 THHHHHH.-TTTSEEEE--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S-TTT CS
   SBP_bac_8 198 wdiaaaq.kagkklgaivpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnksaal 270
                   +   + ++g+ l++i+p++g+++   +++++k + ++ + A++F+ +++spe+qa+ a+++ ++  ++ aa 
  CTQ28329.1 217 DYVSYGNiQQGESLKVIFPASGTVIAPRPMMILKTSQHPGE-AKAFIDYVLSPEGQAKVADAWLMPARRDVAAK 289
                 6655444355******************************7.*******************8877666666655 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   6.3   1.1e-20   2.8e-17       7     315 .]      36     272 ..      31     272 .. 0.76

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 1.1e-20
                 HHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE CS
   SBP_bac_1   7 gaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds 104
                 g+  + l+   fe+  +g+kV++ +  +g ++   +l  ++ +++aDv ++ ++d+  +l + g+llp+ +  +++ +   k           ++i ++
  CTQ28329.1  36 GSLAKSLA-SGFEQ-QTGVKVTVFQATTGKVMA--RLEAEQANPQADVLISaSWDTAEDLHQRGWLLPFASANADQVPANLK---------SADYIAQG 121
                 55566666.88999.8******99999******..88888888999*****7777777***********9877777544433.........33444444 PP

                 .EEESEEEEEEEEEEEETTTHH.CTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHHHHHH CS
   SBP_bac_1 105 .kvlyvPlyaargliYNkdlfe.kagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaatylv 201
                           a g+++       k+g ++p+ W +l+ +a k k  ++ p       + sg    +++ l +s+g                        
  CTQ28329.1 122 vS--------ALGIVW-----NsKSGTPEPKEWRDLTQPAFKDKVTTPDP-------ALSGASLDLLIGLQNSMG------------------------ 176
                 33........778888.....55888888*********************.......888888888999999999........................ PP

                 HHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCSTHHH CS
   SBP_bac_1 202 klyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgsknpea 300
                 +  ++ +++ ++ g+++++ + +a+++ ++  +aa++ +  +  +   ++++  + ++++++                    +   +++i+k+s++p +
  CTQ28329.1 177 DQAWQLFDDLKKNGMVVSGPNAQAVTPVMQGAKAAVFGAVDYVSYGNIQQGESLKVIFPASGTV------------------IAPRPMMILKTSQHPGE 257
                 4444445556777777777777777777777777776666665333333333334444444443..................599************** PP

                 HHHHHHHHTSHHHHH CS
   SBP_bac_1 301 AkkFldfllspeaqa 315
                 Ak+F+d++lspe+qa
  CTQ28329.1 258 AKAFIDYVLSPEGQA 272
                 *************96 PP

>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   1.0   0.00025      0.65      22      74 ..      37      92 ..      23     269 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00025
  PBP_like_2 22 palrkladafekaapgakvnyastGSgagikalrngd....vdfagsdrplteseia 74
                ++ + la  fe++ +g+kv++    +g+ +++l +++    +d+ +s ++ t++++ 
  CTQ28329.1 37 SLAKSLASGFEQQ-TGVKVTVFQATTGKVMARLEAEQanpqADVLISASWDTAEDLH 92
                4556676669999.8********************9999999999999999999763 PP

>> Rhomboid_N  Cytoplasmic N-terminal domain of rhomboid serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0014       3.5      46      75 ..      61      90 ..      42      95 .. 0.72
   2 ?   -2.4   0.0       2.1   5.4e+03      11      26 ..     177     192 ..     167     204 .. 0.72
   3 ?    4.7   0.0     0.014        35       1      22 [.     246     267 ..     246     279 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0014
  Rhomboid_N 46 laqveaeleeFlqnPedekYqqAsWetget 75
                + +v a le+  +nP+++   +AsW+t+e 
  CTQ28329.1 61 TGKVMARLEAEQANPQADVLISASWDTAED 90
                4455555556699**************996 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.1
  Rhomboid_N  11 raaqafidYlrsqgik 26 
                 + a+++ d l++ g+ 
  CTQ28329.1 177 DQAWQLFDDLKKNGMV 192
                 6789999999988875 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.014
  Rhomboid_N   1 MilLlslenpraaqafidYlrs 22 
                 M+ L +++ p  a+afidY  s
  CTQ28329.1 246 MMILKTSQHPGEAKAFIDYVLS 267
                 7889999************755 PP

>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0     3e-05     0.076      15      34 ..     172     191 ..     166     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3e-05
       PPR_2  15 kkgkveeAfklfneMkkrgl 34 
                 ++ + ++A++lf++ kk+g 
  CTQ28329.1 172 QNSMGDQAWQLFDDLKKNGM 191
                 678899*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2197.01
//
Query:       CTQ28330.1  [L=233]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-35  123.2   0.0    1.4e-35  122.8   0.0    1.2  1  ABC_tran      ABC transporter
    4.3e-10   39.9   0.1    0.00019   21.4   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    4.8e-05   23.8   1.6    0.00037   20.9   1.6    2.0  1  AAA_16        AAA ATPase domain
    0.00033   20.6   0.0    0.00062   19.7   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
    0.00042   20.3   0.3      0.063   13.2   0.1    2.2  2  NACHT         NACHT domain
    0.00059   19.8   0.0    0.00088   19.2   0.0    1.2  1  Rad17         Rad17 P-loop domain
    0.00075   19.2   0.0     0.0014   18.3   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
     0.0028   17.9   0.1      0.017   15.4   0.0    1.9  2  AAA_22        AAA domain
     0.0075   16.5   0.1      0.027   14.7   0.1    1.9  2  AAA_28        AAA domain
  ------ inclusion threshold ------
      0.013   15.1   0.1      0.052   13.1   0.1    1.9  2  AAA_25        AAA domain
      0.024   15.1   0.0       0.22   11.9   0.0    2.2  2  AAA           ATPase family associated with various cellular 
      0.025   14.6   0.1      0.052   13.6   0.1    1.5  1  AAA_5         AAA domain (dynein-related subfamily)
      0.031   14.8   0.0      0.049   14.2   0.0    1.5  1  AAA_18        AAA domain
      0.045   13.9   0.4       0.31   11.2   0.1    2.1  2  AAA_33        AAA domain
       0.05   13.8   0.4       0.84    9.9   0.4    2.3  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
      0.055   14.0   0.0      0.084   13.4   0.0    1.2  1  AAA_23        AAA domain
       0.07   12.5   0.0         11    5.3   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
      0.096   12.8   0.0       0.19   11.8   0.0    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
        0.1   12.5   0.0       0.17   11.8   0.0    1.2  1  ATPase_2      ATPase domain predominantly from Archaea
       0.15   12.1   0.0       0.29   11.2   0.0    1.5  1  AAA_14        AAA domain
        0.2   12.0   0.0       0.43   11.0   0.0    1.5  1  RNA_helicase  RNA helicase
       0.24   10.5   0.0       0.46    9.6   0.0    1.4  1  NB-ARC        NB-ARC domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   0.0   1.7e-38   1.4e-35       1     136 [.      22     168 ..      22     169 .. 0.97

  Alignments for each domain:
  == domain 1  score: 122.8 bits;  conditional E-value: 1.7e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren.............esdee 84 
                 l++ +l++++g++va++G++G+GKStLl+llagl+ p++Gei++ ++ + +    l+  ++ ig+++q+  l+p+++v++n             e++++
  CTQ28330.1  22 LDRFTLHIEPGRIVALLGPSGCGKSTLLRLLAGLSVPASGEIRFGDRLVARagWGLPPEQRDIGMVFQDYALWPHMSVAQNvafplrmrgvsrsERERR 120
                 67899****************************************99999999999************************************9999999 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++al+++gl+++++++     s LSgGq+qrvalara++ +p++ll+DEp 
  CTQ28330.1 121 VSEALARVGLNGFAERKP----SGLSGGQQQRVALARAIVAAPRVLLFDEPL 168
                 ************999999....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   5.2e-06    0.0043       1      23 [.      34      56 ..      34      93 .. 0.81
   2 !   21.4   0.0   2.3e-07   0.00019     176     298 ..     105     200 ..      88     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 5.2e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldlla 23
                + +l Gp g+GKS+LL++l +l+
  CTQ28330.1 34 IVALLGPSGCGKSTLLRLLAGLS 56
                5789***************9995 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 2.3e-07
      AAA_21 176 fgfakekrllqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkl 274
                 f+  +++  +++++r+++++ +++ ++g++                         e+ ++ lS G+++  al+ a+ +a+   ++ll+DEp ++L+ +l
  CTQ28330.1 105 FPLRMRGVSRSERERRVSEALARVGLNGFA-------------------------ERKPSGLSGGQQQRVALARAIVAAP---RVLLFDEPLSNLDSEL 175
                 556666777777777777777777777655.........................4556799******99**********...**************** PP

      AAA_21 275 lrrllell.kelsrngaQviltTHS 298
                  ++l + + ++l++ g+  + +TH+
  CTQ28330.1 176 RESLCGEMsRLLRQLGITALYVTHD 200
                 *****8886777779*********7 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   1.6   4.5e-07   0.00037      24     131 ..      31     191 ..      21     203 .. 0.55

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 4.5e-07
      AAA_16  24 p.elvllsGesGvGKsslvrellralekd..........................................ggif.lrgkcdqlesaipysa.laqala 77 
                 p ++v l G+sG+GKs+l+r l+     +                                          ++ f lr + ++     ++   + +ala
  CTQ28330.1  31 PgRIVALLGPSGCGKSTLLRLLAGLSVPAsgeirfgdrlvaragwglppeqrdigmvfqdyalwphmsvaqNVAFpLRMRGVSR---SERERrVSEALA 126
                 3489******************97333334667777666665555555555544433333333332222222222222222222...111222444443 PP

      AAA_16  78 reellrqlldeaesaeleawrekleeala............................avpelagaeasrllellkrllalls 131
                 r +l    +++                                              + ++l+++++++l+ +++rll++l 
  CTQ28330.1 127 RVGLNGFAERK-----------------PsglsggqqqrvalaraivaaprvllfdePLSNLDSELRESLCGEMSRLLRQLG 191
                 33333333333.................022223333333333466677778888888888888888888888888887665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   7.5e-07   0.00062      94     130 ..      26      63 ..       3      68 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 7.5e-07
                  HHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  94 kellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  + +++  ++++l+G+SG GKStL+  l++    + ge+
   CTQ28330.1  26 TLHIEPgRIVALLGPSGCGKSTLLRLLAGLSVPASGEI 63 
                  555665599******************99777666666 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   7.8e-05     0.063       1      21 [.      33      53 ..      33      56 .. 0.90
   2 ?    5.4   0.0     0.019        16      33     113 ..     100     187 ..      87     227 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.8e-05
                SCEEEEC-TTTCHHHHHHHHH CS
       NACHT  1 rlvilqGeaGsGKTtLlqkla 21
                r+v+l G++G+GK+tLl+ la
  CTQ28330.1 33 RIVALLGPSGCGKSTLLRLLA 53
                6899*************9876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.019
                 C-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C.....CHHHHCCSCCCEE.....EEEE-.STT-SS-TCH.........HHHHH CS
       NACHT  33 afklvFflslrelsrsgnarsladllfsqlpepaapvse.....vwavllelperlL.....lilDg.lDelvtdlgqkekqpvrtlLseli 113
                 a  + F l++r +srs+++r++ + l+++++   a+ ++     + + +++l++ ++     l++D  l  l ++l++    ++   +s+l+
  CTQ28330.1 100 AQNVAFPLRMRGVSRSERERRVSEALARVGLNGFAERKPsglsgGQQQRVALARAIVaaprvLLFDEpLSNLDSELRE----SLCGEMSRLL 187
                 34899***********************99988877777677775555555555555666666666434444444444....4444444444 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.1e-06   0.00088      38      69 ..      25      56 ..      18      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.1e-06
       Rad17 38 dvLesrkkriLLisGPsGCgkstvvkvLskel 69
                 +L  ++ ri+ + GPsGCgkst ++ L+   
  CTQ28330.1 25 FTLHIEPGRIVALLGPSGCGKSTLLRLLAGLS 56
                567778899******************99665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.7e-06    0.0014      15      50 ..      25      60 ..      21      66 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.7e-06
      AAA_29 15 htieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                 t++i++  ++ l GpsG GKSTll  ++ l vpa+
  CTQ28330.1 25 FTLHIEPGRIVALLGPSGCGKSTLLRLLAGLSVPAS 60
                5788988889**************976666666666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.1e-05     0.017       5      26 ..      32      53 ..      28      70 .. 0.89
   2 ?    0.2   0.0      0.99   8.1e+02      37      63 ..     154     182 ..     109     219 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.1e-05
      AAA_22  5 agilvvtGesGtGKTtllrrll 26
                 +i+++ G+sG+GK+tllr l+
  CTQ28330.1 32 GRIVALLGPSGCGKSTLLRLLA 53
                6899***************986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.99
      AAA_22  37 e..erpevvfvtlpsstsskdllrellra 63 
                    + p+v++++ p s+  ++l++ l+ +
  CTQ28330.1 154 AivAAPRVLLFDEPLSNLDSELRESLCGE 182
                 13333444444444444444444444444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   3.3e-05     0.027       2      24 ..      35      57 ..      34      76 .. 0.82
   2 ?   -1.5   0.0       3.2   2.6e+03      61      80 ..     145     166 ..     110     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.3e-05
      AAA_28  2 ivitGgestGKTtlleaLaargy 24
                ++++G++++GK+tll+ La   +
  CTQ28330.1 35 VALLGPSGCGKSTLLRLLAGLSV 57
                799***************96544 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
      AAA_28  61 eeqleeeaaa..aankvlfcDr 80 
                 ++q+ ++a+a  aa++vl++D 
  CTQ28330.1 145 QQQRVALARAivAAPRVLLFDE 166
                 4455555555778888888885 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   6.4e-05     0.052      25      54 ..      24      53 ..       3      75 .. 0.77
   2 ?   -0.4   0.0      0.89   7.2e+02     166     192 ..     177     203 ..     118     205 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.4e-05
      AAA_25 25 lvkgllpagelallaGapgtGKttlaldla 54
                 +  ++  g +++l G++g+GK+tl+  la
  CTQ28330.1 24 RFTLHIEPGRIVALLGPSGCGKSTLLRLLA 53
                55668999*****************86665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.89
      AAA_25 166 galvealeriarrtgaavllvhHvgKe 192
                 ++l   + r+ r++g++ l v H ++e
  CTQ28330.1 177 ESLCGEMSRLLRQLGITALYVTHDRRE 203
                 556666777888889999999887765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00028      0.22       2      20 ..      36      54 ..      35      88 .. 0.90
   2 ?    0.9   0.0      0.68   5.6e+02      47      66 ..     148     166 ..      99     203 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00028
                EEESSTTSSHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavak 20
                 l Gp G+GK++l + +a 
  CTQ28330.1 36 ALLGPSGCGKSTLLRLLAG 54
                699************9996 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.68
                 HHHHHHHHHTSTSEEEEEET CS
         AAA  47 relfkeakekakpsilfiDE 66 
                 r  +++a   a p +l++DE
  CTQ28330.1 148 RVALARAIVAA-PRVLLFDE 166
                 44444454454.78888887 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   6.3e-05     0.052       2      22 ..      35      55 ..      34      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.3e-05
                EEEE--SSSSHHHHHHHGGGG CS
       AAA_5  2 vlLvGppGtgKselaerlaaa 22
                v L+Gp+G+gKs+l + la +
  CTQ28330.1 35 VALLGPSGCGKSTLLRLLAGL 55
                679**************9976 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     6e-05     0.049       1      21 [.      35      55 ..      35     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6e-05
      AAA_18  1 IlltGtpGvGKttlakeLskr 21
                ++l G++G+GK+tl + L+ +
  CTQ28330.1 35 VALLGPSGCGKSTLLRLLAGL 55
                6899**************654 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00038      0.31       2      20 ..      35      53 ..      34      60 .. 0.88
   2 ?    0.7   0.0      0.65   5.3e+02      61     108 ..     150     201 ..      99     210 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00038
      AAA_33  2 vllvGlpGsGKstlaerll 20
                v l G++G+GKstl++ l+
  CTQ28330.1 35 VALLGPSGCGKSTLLRLLA 53
                7789**********99776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.65
      AAA_33  61 elarkalsagrnvildat..nlsrrer....arflklarrlgvpvrivvvetde 108
                 +lar   +a r +++d +  nl+ + r     ++ +l+r+lg    +++v+ d+
  CTQ28330.1 150 ALARAIVAAPRVLLFDEPlsNLDSELReslcGEMSRLLRQLGIT--ALYVTHDR 201
                 56777777777788888855555444444446777888888844..44444444 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.4     0.001      0.84      29      85 ..     137     180 ..     110     185 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
     SbcCD_C  29 ssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatll 85 
                 + ++lSGG++q    +ala     ++        a+r++++DE  s+lD+e +++l 
  CTQ28330.1 137 KPSGLSGGQQQR---VALA----RAIV------AAPRVLLFDEPLSNLDSELRESLC 180
                 556666666632...3333....2222......35899************9998875 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0    0.0001     0.084      14      39 ..      26      52 ..      15      55 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.0001
      AAA_23 14 eidFsk.gltlItGpNGaGKTTildAi 39
                +++ ++  ++++ Gp G+GK+T+l+ +
  CTQ28330.1 26 TLHIEPgRIVALLGPSGCGKSTLLRLL 52
                55555535999************9866 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.014        11      25      41 ..      33      49 ..      22      59 .. 0.84
   2 ?    5.3   0.0     0.015        12     135     185 ..     139     185 ..      96     216 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.014
                SEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnll 41
                ++ a++Gp G+GKs ll
  CTQ28330.1 33 RIVALLGPSGCGKSTLL 49
                47899*********987 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.015
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke 185
                 + LSgG+++ vala   Ai ++    + l+De  ++LD + ++ ++  + +
  CTQ28330.1 139 SGLSGGQQQRVALAR--AIVAAP--RVLLFDEPLSNLDSELRESLCGEMSR 185
                 479*****9888774..444333..35688999999999888887755544 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00023      0.19       2      21 ..      35      54 ..      34      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00023
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                va++G +  GKStL++ l g
  CTQ28330.1 35 VALLGPSGCGKSTLLRLLAG 54
                89**************9987 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00021      0.17      17      39 ..      29      51 ..      25      60 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00021
    ATPase_2 17 repneiyfiYGpegsGKtaLlke 39
                 ep +i+ + Gp g+GK++Ll+ 
  CTQ28330.1 29 IEPGRIVALLGPSGCGKSTLLRL 51
                588999***************95 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00036      0.29       3      23 ..      33      53 ..      31      65 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00036
      AAA_14  3 kilvitGaRrvGKTtllkqli 23
                +i+++ G+  +GK+tll+ l+
  CTQ28330.1 33 RIVALLGPSGCGKSTLLRLLA 53
                899**************9886 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00053      0.43       2      19 ..      36      53 ..      35      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00053
  RNA_helicase  2 wlyGpsgeGKStlakeLa 19
                   l Gpsg+GKStl + La
    CTQ28330.1 36 ALLGPSGCGKSTLLRLLA 53
                  689**********99876 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00056      0.46      17      38 ..      30      50 ..      21      53 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00056
                TSCSEEEEEEESTTSSHHHHHH CS
      NB-ARC 17 elqslvvalvGmgGvGKttlak 38
                e++  +val G  G+GK+tl++
  CTQ28330.1 30 EPG-RIVALLGPSGCGKSTLLR 50
                566.69*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1757.45
//
Query:       CTQ28331.1  [L=193]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-12   46.4   0.0    5.3e-12   46.0   0.0    1.1  1  Flavin_Reduct  Flavin reductase like domain
  ------ inclusion threshold ------
      0.064   13.3   0.1       0.34   11.0   0.0    1.9  2  Arabinose_bd   Arabinose-binding domain of AraC transcription


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   5.9e-16   5.3e-12       7     138 ..      20     154 ..      14     164 .. 0.89

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 5.9e-16
                    E-EEEEE.EE.TTEEEEEEESSEEEEETTTTEEEEEEETTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCCCCEEECT.CCCS CS
  Flavin_Reduct   7 pvavvttsvp.ptsplgatlssftslsldPplvafslrlpsstadalkeagefvinllsesqealadafsqksgprtddksifagltwees.ptga 100
                    p  ++t+ ++ +++++ + + + +++ + Pp va+ ++++  t + ++++g f i +     ++   a ++ sg r++dk+++ g+   ++ + g+
     CTQ28331.1  20 PTILITSYDApSDRRNVMAAAWSMPVEFAPPRVAIVVDKSTWTREIIERNGTFGIVVPGVAAASWTYAVGSVSG-RDEDKFNAWGIPVVTGpELGL 114
                    66677776664777778****************************************99999999******999.*****9988999999977899 PP

                    EEE.TTCSEEEEEEEEEEECC.TTEEEEEEEEEEEEESTT CS
  Flavin_Reduct 101 pal.lgalasleCqvvgsvel.gdhelfigeVvavkvgdd 138
                    p++ + +la++eC+++    +  + + + geVv++  ++ 
     CTQ28331.1 115 PLIeEKCLAWMECRLLPATAAqTQYDTLFGEVVSAAADER 154
                    ***999***********87774579999*****9987775 PP

>> Arabinose_bd  Arabinose-binding domain of AraC transcription regulator, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.8e-05      0.34     149     185 ..      26      63 ..       7      65 .. 0.84
   2 ?   -0.1   0.0     0.097   8.7e+02     151     177 ..     131     157 ..     127     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.8e-05
  Arabinose_bd 149 ehpapa.daaeyrrlFgcpvrFgapanalvfdaadldl 185
                   +++ap+ ++  +++++  pv+F  p+ a+v+d++ +++
    CTQ28331.1  26 SYDAPSdRRNVMAAAWSMPVEFAPPRVAIVVDKSTWTR 63 
                   69999977779**********************99987 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.097
  Arabinose_bd 151 papadaaeyrrlFgcpvrFgapanalv 177
                   pa a +++y+ lFg  v   a++ a+v
    CTQ28331.1 131 PATAAQTQYDTLFGEVVSAAADERAFV 157
                   566677899999999999888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1597.17
//
Query:       CTQ28332.1  [L=75]
Description: 4-oxalocrotonate tautomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-14   53.3   0.0    2.6e-14   52.9   0.0    1.2  1  Tautomerase    Tautomerase enzyme
     0.0042   17.1   0.0     0.0053   16.8   0.0    1.1  1  Tautomerase_2  Tautomerase enzyme
  ------ inclusion threshold ------
      0.029   14.6   0.0      0.039   14.2   0.0    1.3  1  Tautomerase_3  Putative oxalocrotonate tautomerase enzyme
       0.12   10.9   0.1       0.13   10.8   0.1    1.0  1  Mqo            Malate:quinone oxidoreductase (Mqo)


Domain annotation for each model (and alignments):
>> Tautomerase  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   5.7e-18   2.6e-14       1      52 [.       2      54 ..       2      58 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 5.7e-18
                 -EEEEEESTCS.-HHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEEE-TTSEEE CS
  Tautomerase  1 PfvnIklvegr.saeqKaeLaervTealvealgaprsaivVvieEvpaenwgv 52
                 P+v+Ik++ ++ ++eqK +La+++Te+l+++l+ ++sa++V++ +v+++ w++
   CTQ28332.1  2 PHVDIKCFPRElTDEQKTALAADITEVLIRHLNSKESAVSVALTQVEPDAWQA 54
                 9**************************************************85 PP

>> Tautomerase_2  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.2e-06    0.0053      32      79 ..       4      52 ..       1      53 [. 0.91

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.2e-06
                   EEEEEES--..-HHHHHHHHHHHHHHHHHHH---GGGEEEEEEEE-GGGE CS
  Tautomerase_2 32 ieitlsegR..seeqKkaLyralaerlaaklgirpeDvfivlvenpkedW 79
                   ++i ++ +R  ++eqK+aL + ++e l ++l+ +++ v + l++++++ W
     CTQ28332.1  4 VDIKCF-PRelTDEQKTALAADITEVLIRHLNSKESAVSVALTQVEPDAW 52
                   677787.774479***********************************99 PP

>> Tautomerase_3  Putative oxalocrotonate tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   8.6e-06     0.039       1      30 [.       1      30 [.       1      53 [. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.6e-06
                   --EEEEEE-TTSS-HHHHHHHHHHHHHHHH CS
  Tautomerase_3  1 MPlwkiyhpkntftkeekealakkiteiYt 30
                   MP  +i   +  +t+e+k+ala++ite+ +
     CTQ28332.1  1 MPHVDIKCFPRELTDEQKTALAADITEVLI 30
                   999***********************9875 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1     3e-05      0.13     351     398 ..      23      70 ..      12      74 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3e-05
         Mqo 351 ldLvkYlieqvlkskedrlealreflpeakkedWelvvaGqRvqvikk 398
                  d+++ li+++  ++++   al++  p+a +  W+ + a q  q+ik+
  CTQ28332.1  23 ADITEVLIRHLNSKESAVSVALTQVEPDAWQAVWDSEIAPQMAQLIKQ 70 
                 689999****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 686.69
//
Query:       CTQ28333.1  [L=205]
Description: putative enzyme with similarity with GST [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-08   34.7   0.0    3.5e-08   33.7   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    1.7e-06   28.2   0.0    4.9e-06   26.7   0.0    1.7  2  GST_N_2   Glutathione S-transferase, N-terminal domain
      9e-06   26.0   0.0    1.8e-05   25.0   0.0    1.6  1  GST_N     Glutathione S-transferase, N-terminal domain
      0.001   19.2   0.0     0.0024   18.0   0.0    1.6  2  GST_C_3   Glutathione S-transferase, C-terminal domain
     0.0029   17.6   1.1     0.0072   16.3   0.3    2.2  1  GST_C_2   Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
       0.07   13.4   0.0       0.17   12.1   0.0    1.6  1  GST_C     Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.2e-11   3.5e-08      15      72 ..      17      79 ..      15      88 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.2e-11
                HHHHHHT--EEEE---TTTT....HHHHHHH-TT--SSEEE.TTS-EEESHHHHHHHHHHHH- CS
     GST_N_3 15 laLnekglpvevvevtpgeh....deellaknplgkvPvLe.ddgealtdSlaIidyLeelyp 72
                l+L + ++p+evv+v++++     +e+l+++npl +vP+L+  dg ++t+++aI+  + +++p
  CTQ28333.1 17 LMLSLADIPYEVVDVEGFDQpgpaRERLRQINPLCQVPTLRlADGSIMTETAAIALMILDQRP 79
                689999*********966644445****************9668************9888877 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.6e-09   4.9e-06      10      67 ..      17      74 ..      13      77 .. 0.87
   2 ?   -2.2   0.0       1.8   5.4e+03      27      43 ..     166     181 ..     146     184 .. 0.54

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.6e-09
                HHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHH CS
     GST_N_2 10 ialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlryl 67
                ++l l  +++++  v   +++  + e + ++np+++VP+L + dg++ +e+++I+ ++
  CTQ28333.1 17 LMLSLADIPYEVVDVEGFDQPGPARERLRQINPLCQVPTLRLADGSIMTETAAIALMI 74
                799***********9444455666688***************************9997 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.8
                 ..-TTSHHHHHHHHCTT CS
     GST_N_2  27 epkgfekseefprlnpr 43 
                  ++g +  ++f ++ p+
  CTQ28333.1 166 YRWGPRQ-AWFDDHAPK 181
                 3444443.466666665 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   6.1e-09   1.8e-05       3      72 ..       2      72 ..       1      76 [. 0.88

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 6.1e-09
                EEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGC.HHHHHHCTTS-SSEEEET.TEEEESHHHHHH CS
       GST_N  3 ltlysirgsprahrirlllaakgveyevvpldfeageeks.pellklnplgkvPaLedn.gkkltESraIle 72
                +t+y+ +g + +   +l+l  ++++yevv+++  +++  + + l ++npl +vP+L    g + tE+ aI+ 
  CTQ28333.1  2 ITVYGVPG-WGSTISELMLSLADIPYEVVDVEGFDQPGPArERLRQINPLCQVPTLRLAdGSIMTETAAIAL 72
                68999999.99999*****************9655555555***************8877**********85 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2   3.6e+03      52      58 ..     107     113 ..      93     131 .. 0.80
   2 !   18.0   0.0   8.1e-07    0.0024      19      96 ..     123     199 ..     104     202 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
                 S--HHHH CS
     GST_C_3  52 klTyADl 58 
                 ++TyAD+
  CTQ28333.1 107 TFTYADY 113
                 6799986 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 8.1e-07
                 HHHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHHTCC.CC-HHHHHHHHHHHTSHHHHHHH CS
     GST_C_3  19 ekkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleeaeal.kkfpklkalyervearpkikaYl 96 
                 e+  e  ++  ++ + +fe+ l+  +g++ +g ++T+ D  + ++     ++++  ++ pk +a   +v +rp+++a l
  CTQ28333.1 123 EQLVENCRQYRKNLYLWFEQQLA--AGPWALGASVTLLDCYIAAMYRWGPRQAWFdDHAPKFAAIARAVCQRPELAAAL 199
                 444555556667778899****9..999****************999888884555899****************9976 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3   2.4e-06    0.0072       9      46 ..     131     168 ..     119     197 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.4e-06
                 HHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHH CS
     GST_C_2   9 eqldaaldaleahLadspflfGdqptlaDialapflvr 46 
                 +  ++   ++e++La +p+++G+  tl D+  a+++ +
  CTQ28333.1 131 QYRKNLYLWFEQQLAAGPWALGASVTLLDCYIAAMYRW 168
                 4555555589*************************998 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.6e-05      0.17      18      71 ..     120     173 ..      98     193 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.6e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHT CS
       GST_C  18 ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlg 71 
                 +  e+lv+++++  ++ +  +e +l+   +  G  +tl D+++++  +w +r  
  CTQ28333.1 120 AAAEQLVENCRQYRKNLYLWFEQQLAAGPWALGASVTLLDCYIAAMYRWGPRQA 173
                 567889*****************************************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.33
# Mc/sec: 1865.35
//
Query:       CTQ28334.1  [L=297]
Description: ABC transporter substrate binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-31  108.8   0.0    3.2e-31  108.5   0.0    1.1  1  SBP_bac_3  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.0   1.8e-35   3.2e-31       1     224 [.      54     280 ..      54     281 .. 0.91

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 1.8e-35
                 EEEEE-S.-BTTTBEE-T.TS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSH CS
                 xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvda.dypPfsykde.ngeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdas 97 
                 l+v+++a ++pP       n +  G d+d+a+ +a +lg+k+ +vp+ w++   +++sg++D+a  +i++t++R+ek+dF + y + ++++ v+ + +s
  CTQ28334.1  54 LTVAISAlNSPPLALLASdNRTRIGSDPDIARLLAGSLGLKLRLVPTAWEDWPLGIASGRYDVALINIAVTEKRKEKFDFAT-YRVDSLAFSVK-S-TS 149
                 6888888899*****99989999**********************************************************6.**********9.4.46 PP

                 GTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC.......TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  98 kissiksladLkgkkvgvqagstaeellkeelkk.......gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyai 189
                 +i  ++++adL+g+kv v  g+++e +l  ++++       +a+ v+  ++++  + +++gr+d +++ ++v+ay ++ n+   vv       ++  ++
  CTQ28334.1 150 DIAAVNGPADLAGRKVIVGSGTNQERILLGWNEDnraagrpQAQPVYLTDDASGNLYIQSGRADIFFGPQSVAAYKAALNGQTRVVG---LGPKKAWVA 245
                 8999***********************888665578899888888887778888777*****************************9...555666666 PP

                 EEETTTHHHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 190 avrkgdseLrkainkalaelkadgtlakisekWfg 224
                    k+++ L+ a+++al+  +a g++++  ++W+ 
  CTQ28334.1 246 TTTKKGNGLVYALQAALDGAIARGEYQQVLARWGE 280
                 778999***************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2346.06
//
Query:       CTQ28335.1  [L=259]
Description: putative transporter subunit: ATP-binding component of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-35  121.1   0.0    6.2e-35  120.7   0.0    1.2  1  ABC_tran     ABC transporter
      4e-17   63.0   0.2    5.2e-09   36.3   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    5.3e-09   35.8   0.0    0.00022   20.8   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
    2.8e-05   23.7   0.0    5.6e-05   22.8   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
      3e-05   23.0   0.3      0.041   12.7   0.1    2.9  2  ABC_ATPase   Predicted ATPase of the ABC class
    3.7e-05   24.2   0.1    8.1e-05   23.1   0.1    1.6  1  AAA_16       AAA ATPase domain
    4.2e-05   22.4   0.0      0.032   12.9   0.0    2.1  2  AAA_13       AAA domain
    0.00012   21.9   0.0       0.01   15.6   0.0    2.1  2  AAA_15       AAA ATPase domain
    0.00034   20.6   0.0    0.00078   19.4   0.0    1.7  1  ATPase_2     ATPase domain predominantly from Archaea
    0.00037   21.0   0.1    0.00075   20.1   0.0    1.5  1  AAA_23       AAA domain
    0.00063   19.7   0.0     0.0015   18.4   0.0    1.6  2  RsgA_GTPase  RsgA GTPase
    0.00096   19.4   0.2     0.0035   17.6   0.2    2.1  1  AAA_22       AAA domain
     0.0017   18.5   0.1       0.38   11.0   0.1    3.1  2  SbcCD_C      Putative exonuclease SbcCD, C subunit
     0.0036   17.4   0.0      0.057   13.4   0.0    2.3  2  AAA_14       AAA domain
     0.0056   16.8   0.0      0.012   15.8   0.0    1.7  1  AAA_33       AAA domain
      0.009   15.6   0.1      0.033   13.8   0.0    1.9  2  cobW         CobW/HypB/UreG, nucleotide-binding domain
  ------ inclusion threshold ------
      0.017   15.1   0.0      0.048   13.6   0.0    1.7  2  NACHT        NACHT domain
      0.018   15.1   0.6       0.31   11.1   0.6    2.7  1  MMR_HSR1     50S ribosome-binding GTPase
      0.018   14.8   0.0      0.049   13.4   0.0    1.6  2  AAA_30       AAA domain
      0.025   15.1   0.0      0.055   14.0   0.0    1.6  1  AAA_18       AAA domain
      0.028   14.3   0.0      0.068   13.1   0.0    1.7  1  APS_kinase   Adenylylsulphate kinase
      0.031   14.0   0.1      0.063   13.0   0.0    1.6  1  AAA_24       AAA domain
      0.048   13.2   0.3        0.2   11.2   0.0    1.9  2  AAA_25       AAA domain
      0.055   13.0   0.1        2.5    7.6   0.0    2.7  3  CobU         Cobinamide kinase / cobinamide phosphate guanylt
      0.058   12.2   0.0      0.097   11.4   0.0    1.3  1  Adeno_IVa2   Adenovirus IVa2 protein
       0.06   12.5   0.0       0.59    9.2   0.0    2.0  2  G-alpha      G-protein alpha subunit
      0.063   13.3   0.1       0.72    9.9   0.0    2.3  2  AAA_5        AAA domain (dynein-related subfamily)
      0.077   12.6   0.0       0.13   11.8   0.0    1.3  1  AAA_27       AAA domain
      0.081   12.8   0.0       0.26   11.2   0.0    1.7  2  Rad17        Rad17 P-loop domain
      0.088   13.3   0.0       0.19   12.2   0.0    1.6  1  oligo_HPY    Oligopeptide/dipeptide transporter, C-terminal r
        0.1   13.0   0.0        1.1    9.7   0.0    2.2  1  AAA          ATPase family associated with various cellular a
        0.1   12.8   0.1       0.48   10.7   0.0    2.0  2  AAA_28       AAA domain
        0.1   11.3   0.0       0.13   11.0   0.0    1.2  1  RNA12        RNA12 protein
       0.11   11.7   0.0        0.2   10.8   0.0    1.3  1  NB-ARC       NB-ARC domain
       0.13   11.5   0.0       0.24   10.6   0.0    1.3  1  Zeta_toxin   Zeta toxin


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.0   1.2e-37   6.2e-35       1     137 []      24     182 ..      24     182 .. 0.88

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 1.2e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG............B-HHHCCHCEEEE-SS--S-TTSBHHHH........ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke............qeleslrkeigvlpqepqlfpeltvren........ 79 
                 l++vsl++ +g++++i+G++G+GKStLl+++ +l++ +eG i++dg+ + +            +e+ + r ++g+++q+ +lfp+ltv en        
  CTQ28335.1  24 LDDVSLEIPPGTVTVILGPSGSGKSTLLRTINHLERVDEGFIQIDGDYIGYrrkgdklyemkeKEILRQRINVGYVFQNFNLFPHLTVLENlieapiah 122
                 799**********************************************999*********777777888899***********************999 PP

                 ......HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ......esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                       e+ ++++++l+ +gl +++d       ++LSgGq+qr+a+aral+ +p+++l+DEpt+
  CTQ28335.1 123 qqvtrkEAIARAYELLDVVGLRNKAD----AWSRHLSGGQQQRIAIARALALNPRVILFDEPTS 182
                 88744444444666666666666444....445*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.6e-08   2.4e-05       1      36 [.      36      73 ..      36     103 .. 0.71
   2 !   36.3   0.0     1e-11   5.2e-09     235     297 ..     152     211 ..     148     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4.6e-08
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl..drdvegltdel 36
                ++v+ Gp gsGKS+LL+++ +l r+     ++++ ++ 
  CTQ28335.1 36 VTVILGPSGSGKSTLLRTINHLERVdeGFIQIDGDYIG 73
                79*******************98765433333333333 PP

  == domain 2  score: 36.3 bits;  conditional E-value: 1e-11
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 r+lS G+++ +a++ al+  +   +++l+DEp + L+P+l+ ++l+++k+l+r g+ ++++TH
  CTQ28335.1 152 RHLSGGQQQRIAIARALALNP---RVILFDEPTSALDPELVGEVLDVIKKLARSGTTLVVVTH 211
                 799****99978888888777...*************************************** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   8.5e-05     0.044      25      46 ..      35      56 ..      12      60 .. 0.81
   2 !   20.8   0.0   4.3e-07   0.00022     135     208 ..     108     223 ..      71     233 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.5e-05
                SEEEEEESTTSSHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAilF 46
                 +t+i+Gp GSGKs ll  i +
  CTQ28335.1 35 TVTVILGPSGSGKSTLLRTINH 56
                489**************99976 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 4.3e-07
                 T............................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT CS
                 x............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e............................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn 189
                 +                                             LSgG+++ +a+a  +A++    + + l+De  +aLD + v +v +++k+   +
  CTQ28335.1 108 HltvlenlieapiahqqvtrkeaiarayelldvvglrnkadawsrHLSGGQQQRIAIARALALNP---R-VILFDEPTSALDPELVGEVLDVIKKLARS 202
                 3444445555555555555555555555555555555556666669**************99864...3.679*********************98777 PP

                 .SEEEEE-SSHHHCCC-.SCE CS
                 .xxxxxxxxxxxxxxxx.xxx RF
       SMC_N 190 .aQfivislreemleka.dkl 208
                  + ++v++++ ++ +++ d++
  CTQ28335.1 203 gTTLVVVTHEIGFAREVaDQV 223
                 588899999988876652444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.1e-07   5.6e-05      13      39 ..      25      51 ..      21      57 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.1e-07
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                d+ ++ei +  +t++ GpsGsGKSTll
  CTQ28335.1 25 DDVSLEIPPGTVTVILGPSGSGKSTLL 51
                66788998888***************9 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1     8e-05     0.041     241     265 ..      30      55 ..      27      58 .. 0.91
   2 !    6.8   0.0    0.0048       2.5     322     353 ..     153     184 ..     143     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8e-05
                 EE-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAle 265
                  ip G vt+I G+   GKsTLL+ ++
  CTQ28335.1  30 EIPPGtVTVILGPSGSGKSTLLRTIN 55 
                 699999*****************997 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0048
                 S--HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 322 dASGStsqAanimealeagakllLiDEDtsAt 353
                   SG   q  +i++al ++ +++L+DE tsA 
  CTQ28335.1 153 HLSGGQQQRIAIARALALNPRVILFDEPTSAL 184
                 569999999*********************94 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   1.6e-07   8.1e-05      24     107 ..      32     180 ..      20     228 .. 0.51

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.6e-07
      AAA_16  24 p..elvllsGesGvGKsslvrellralekdggiflrgkcdql..esaipysalaqalareellrqllde......................aesaelea 96 
                 p   ++++ G+sG+GKs+l+r++  +le+ +  f++ + d    +++   + l ++ ++ e+lrq  +                       + + ++  
  CTQ28335.1  32 PpgTVTVILGPSGSGKSTLLRTIN-HLERVDEGFIQIDGDYIgyRRK--GDKLYEMKEK-EILRQRINVgyvfqnfnlfphltvlenlieaPIAHQQVT 126
                 4557899*****************.6776654454444444411222..1334444433.444444444444333333333333333211144444444 PP

      AAA_16  97 wrekleeala...........................................a 107
                  +e++ +a++                                           +
  CTQ28335.1 127 RKEAIARAYElldvvglrnkadawsrhlsggqqqriaiaralalnprvilfdeP 180
                 444444444455555455544444444444444444444444444444444444 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0     0.003       1.6      19      64 ..      37      93 ..      30     139 .. 0.70
   2 !   12.9   0.0   6.2e-05     0.032     525     580 ..     170     222 ..     143     224 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.003
      AAA_13 19 NliYGwNGaGKTtLSrllrslelgetepkfangsi.............eitngeeldir 64
                 +i G  G+GK+tL r ++ le+    + f +                e++++e l+ r
  CTQ28335.1 37 TVILGPSGSGKSTLLRTINHLER--VDEGFIQIDGdyigyrrkgdklyEMKEKEILRQR 93
                5899****************976..4455644332445555555555555555555555 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.2e-05
      AAA_13 525 gkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580
                  + +++ +D P S LD + +  v   ik+ +    +   l + TH + f +ev ++
  CTQ28335.1 170 LNPRVILFDEPTSALDPELVGEVLDVIKKLA---RSGTTLVVVTHEIGFAREVADQ 222
                 4789**************************9...88899*************9876 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     2e-05      0.01      12      71 ..      22      78 ..      21      93 .. 0.78
   2 ?    4.7   0.0     0.039        20     301     364 ..     158     211 ..      76     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2e-05
      AAA_15 12 Rslkdveidlsee.ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeni 71
                ++l+dv++++ +  +tv+ G+ +sGKS++l+ ++ +   +    + +i i+ + + + ++ 
  CTQ28335.1 22 KALDDVSLEIPPGtVTVILGPSGSGKSTLLRTINHLERVD----EGFIQIDGDYIGYRRKG 78
                78999999999989*******************9998877....55666666555555544 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.039
      AAA_15 301 vqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 +q+ + ++  ++ +         + ++l++EP   L p++  ++ + +k+la+++   +++ TH
  CTQ28335.1 158 QQQRIAIARALALN---------PRVILFDEPTSALDPELVGEVLDVIKKLARSGT-TLVVVTH 211
                 55555555444443.........4469****************************7.8999999 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.5e-06   0.00078       6      83 ..      22     123 ..      17     230 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.5e-06
    ATPase_2   6 kelkeleeilerepneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekal...................... 82 
                 k+l+++   le  p ++ +i Gp gsGK++Ll+ i + le  d+  +  i+   +   ++ +++ e +ek+ l++ +                      
  CTQ28335.1  22 KALDDVS--LEIPPGTVTVILGPSGSGKSTLLRTI-NHLERVDE-GFIQIDGDYIGYRRKGDKLYEMKEKEILRQRInvgyvfqnfnlfphltvlenli 116
                 5555553..5667899****************975.55555554.444556666666666666667788888888777766666666666555554444 PP

    ATPase_2  83 ......g 83 
                       +
  CTQ28335.1 117 eapiahQ 123
                 4444431 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.5e-06   0.00075       4      39 ..      11      54 ..       8      56 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.5e-06
      AAA_23  4 ienfrsf.......rdqeidFsk.gltlItGpNGaGKTTildAi 39
                i ++ ++       +d++++  +  +t+I Gp G+GK+T+l+ i
  CTQ28335.1 11 ITGVSKYygrhkalDDVSLEIPPgTVTVILGPSGSGKSTLLRTI 54
                55555555554444566666644269***************977 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     3e-06    0.0015      88     121 ..      22      56 ..       8      69 .. 0.79
   2 ?   -2.6   0.0         9   4.6e+03      32      63 ..     122     154 ..     108     191 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3e-06
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallp 121
                  ++l++++ ++    ++v++G+SG GKStL+ +++ 
   CTQ28335.1  22 KALDDVSLEIPPgTVTVILGPSGSGKSTLLRTINH 56 
                  566666666665589**************999876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9
                  HHHHHHHHHHHHHTT-EEEEEE.E-GGG--HHH CS
  RsgA_GTPase  32 lnlldrfLvlaeekgiepvivl.nKiDlleeee 63 
                  +++++r  ++a + ++  v+ l nK+D  +++ 
   CTQ28335.1 122 HQQVTRKEAIARAYELLDVVGLrNKADAWSRHL 154
                  555555555555555433333326666665554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   6.9e-06    0.0035       6      29 ..      35      58 ..      33     213 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 6.9e-06
      AAA_22  6 gilvvtGesGtGKTtllrrlleql 29
                +++v+ G+sG+GK+tllr++ +  
  CTQ28335.1 35 TVTVILGPSGSGKSTLLRTINHLE 58
                6899***************98875 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.52   2.7e+02      69      81 ..      60      72 ..      56      75 .. 0.88
   2 !   11.0   0.1   0.00074      0.38      32      89 ..     153     197 ..     131     198 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.52
     SbcCD_C 69 LDEAFsklDeesi 81
                 DE+F ++D+++i
  CTQ28335.1 60 VDEGFIQIDGDYI 72
                5********9987 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00074
     SbcCD_C  32 tlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                  lSGG++q  +      a+a ++        ++r++++DE  s lD+e + ++l++++
  CTQ28335.1 153 HLSGGQQQR-I------AIARALAL------NPRVILFDEPTSALDPELVGEVLDVIK 197
                 555665532.2......22223333......489*******************99987 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00011     0.057       3      53 ..      35      82 ..      33     101 .. 0.70
   2 ?    1.4   0.0      0.59     3e+02      51     107 ..     191     243 ..     158     258 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00011
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekll 53
                 + vi G+  +GK+tll+++ + +   +e ++ i+ d   ++++ d+  l+
  CTQ28335.1 35 TVTVILGPSGSGKSTLLRTINHLER-VDEGFIQIDGDYIGYRRKGDK--LY 82
                5889************998854444.679999999998877654433..33 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.59
      AAA_14  51 kllelileklkeekktylflDEiqevpewekalkslvdegknldvivtGSnskllsk 107
                 ++l++i++++++  + +++  Ei  ++e+ + +  +vd    ++++  GS+  +l +
  CTQ28335.1 191 EVLDVIKKLARSGTTLVVVTHEIGFAREVADQVVFMVD----GRIVEQGSSDEVLNH 243
                 44445555433323344555666666666666666666....247777777777655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.3e-05     0.012       1      33 [.      36      90 ..      36     218 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.3e-05
      AAA_33  1 lvllvGlpGsGKstlaerl..lkklg..avllssdt..................l 33
                ++++ G++GsGKstl++ +  l++ +  ++ ++ d+                  l
  CTQ28335.1 36 VTVILGPSGSGKSTLLRTInhLERVDegFIQIDGDYigyrrkgdklyemkekeiL 90
                67889***********985325554467888888885555555555555544442 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.4e-05     0.033       2      21 ..      36      55 ..      35      83 .. 0.87
   2 ?   -1.4   0.0       2.9   1.5e+03     108     129 ..     216     236 ..     200     246 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.4e-05
                EEEEEESTTCCHHHHHHHHH CS
        cobW  2 vtvltGflGsGKTtLlnhll 21
                vtv+ G+ GsGK+tLl+++ 
  CTQ28335.1 36 VTVILGPSGSGKSTLLRTIN 55
                89***************986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.9
                 HCCCECEEEEEEETTTH.CCHC CS
        cobW 108 sdltldavvavvDaknleaeee 129
                 ++  +d vv++vD++ +e +++
  CTQ28335.1 216 AREVADQVVFMVDGRIVE-QGS 236
                 466789999999996664.333 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.4e-05     0.048       2      21 ..      36      55 ..      35      62 .. 0.89
   2 ?   -2.0   0.0       5.8     3e+03      76      89 ..     216     229 ..     177     250 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.4e-05
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                + ++ G++GsGK+tLl+ + 
  CTQ28335.1 36 VTVILGPSGSGKSTLLRTIN 55
                6799*************996 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.8
                 HCCSCCCEEEEEE- CS
       NACHT  76 llelperlLlilDg 89 
                   e+++++++ +Dg
  CTQ28335.1 216 AREVADQVVFMVDG 229
                 34566666676666 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   0.00061      0.31       3      21 ..      38      56 ..      36     251 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00061
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                +i+G + +GKStL++++  
  CTQ28335.1 38 VILGPSGSGKSTLLRTINH 56
                799************9964 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.5e-05     0.049      19      41 ..      35      57 ..      30      72 .. 0.87
   2 ?   -2.0   0.0         5   2.6e+03      90      96 ..     173     179 ..     129     218 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.5e-05
      AAA_30 19 rvavltGpAGtGKttalkalrea 41
                 v+v+ Gp G+GK+t+l++++++
  CTQ28335.1 35 TVTVILGPSGSGKSTLLRTINHL 57
                589***************99876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5
      AAA_30  90 tllivDE 96 
                 ++++ DE
  CTQ28335.1 173 RVILFDE 179
                 3444444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   0.00011     0.055       2      30 ..      38      83 ..      38     141 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 0.00011
      AAA_18  2 lltGtpGvGKttlakeLskrlgf.................gvnlrd 30
                ++ G++G+GK+tl + ++ ++ +                 g++l +
  CTQ28335.1 38 VILGPSGSGKSTLLRTINHLERVdegfiqidgdyigyrrkGDKLYE 83
                589**************76653355445554333333333222222 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00013     0.068       3      99 ..      35     134 ..      33     145 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00013
                 EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SSHHHHHHHHHH..HHHHHHHHHHTT-E.EEEE--.--SHHHHHHHHHHHH CS
  APS_kinase   3 vvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfseedRkenirr..vaevaklladagli.vlvafi.sPyreeReaarelle 97 
                 +v  + G sgsGKst+ ++++ +L++     + +dGd +    + d  +++++++   +r  v+ v ++++   ++ vl  +i +P +++  + +e+++
  CTQ28335.1  35 TVTVILGPSGSGKSTLLRTIN-HLERVDEGFIQIDGDYIGYRRKGDKLYEMKEKEILRQRinVGYVFQNFNLFPHLtVLENLIeAPIAHQQVTRKEAIA 132
                 566788***********9998.899*************9777777766666666655555125667777766554413344444566666555555555 PP

                 CH CS
  APS_kinase  98 ea 99 
                 +a
  CTQ28335.1 133 RA 134
                 55 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00012     0.063       4      23 ..      36      61 ..      34      96 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00012
      AAA_24  4 kiliyGpsgiGKTtlakel......g 23
                  +i Gpsg+GK+tl++++       
  CTQ28335.1 36 VTVILGPSGSGKSTLLRTInhlervD 61
                579***************94433333 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00039       0.2      30      50 ..      31      51 ..      26      54 .. 0.93
   2 ?   -0.4   0.0       1.4   7.4e+02     129     186 ..     188     209 ..     127     212 .. 0.48

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00039
      AAA_25 30 lpagelallaGapgtGKttla 50
                +p g+++++ G++g+GK+tl+
  CTQ28335.1 31 IPPGTVTVILGPSGSGKSTLL 51
                799****************97 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.4
      AAA_25 129 dvdaleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllv 186
                                                     vg++++ ++++ +r g ++++v
  CTQ28335.1 188 L-----------------------------------VGEVLDVIKKL-ARSGTTLVVV 209
                 1...................................23333333333.2334444444 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.24   1.2e+02       1      14 [.      37      50 ..      37      61 .. 0.86
   2 ?    7.6   0.0    0.0049       2.5      84     128 ..     171     215 ..     143     223 .. 0.78
   3 ?   -1.1   0.0       2.4   1.2e+03     153     167 ..     218     232 ..     215     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.24
        CobU  1 ilvtGgarSGKSef 14
                ++++G++ SGKS++
  CTQ28335.1 37 TVILGPSGSGKSTL 50
                579*********86 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0049
        CobU  84 wltnllleeeaekveekleeeveellealkelkatvvlVsnEvgl 128
                     +l++e +++ + +l  ev +++++l+++ +t+v+V+ E+g+
  CTQ28335.1 171 NPRVILFDEPTSALDPELVGEVLDVIKKLARSGTTLVVVTHEIGF 215
                 55566777666668889999999********************97 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.4
        CobU 153 aeadevvlvvaGlpl 167
                 + ad+vv++v G  +
  CTQ28335.1 218 EVADQVVFMVDGRIV 232
                 579********9865 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019     0.097      88     107 ..      35      54 ..      10      63 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
  Adeno_IVa2  88 viGviyGPtGsGksqllrnl 107
                  + vi GP GsGks llr++
  CTQ28335.1  35 TVTVILGPSGSGKSTLLRTI 54 
                 588***************86 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0011      0.59      27      47 ..      38      58 ..      35      66 .. 0.87
   2 ?    0.8   0.0      0.42   2.1e+02     174     223 ..      82     154 ..      74     164 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0011
                EEEESTTSSHHHHHHHHHHHC CS
     G-alpha 27 lllGqseSGKsTilkqlklly 47
                ++lG s+SGKsT+l+ +  l+
  CTQ28335.1 38 VILGPSGSGKSTLLRTINHLE 58
                589************998775 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.42
                 ----CHHHHCS-----SEEEEEEEC........................T-TEEEEEEEE-SSHHHHHGTCCCT CS
     G-alpha 174 YlptddDilkarlktvGisetkfev........................dsklefrivdvgGqrserkkWvpff 223
                 Y+ +++ il+ r   vG    +f++                           + ++++dv G r++  +W  ++
  CTQ28335.1  82 YEMKEKEILRQR-INVGYVFQNFNLfphltvlenlieapiahqqvtrkeAIARAYELLDVVGLRNKADAWSRHL 154
                 666666666666.4566666666655555555555555555444444333344599************998765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0014      0.72       3      22 ..      38      57 ..      37      66 .. 0.90
   2 ?    1.0   0.0      0.76   3.9e+02      64     105 ..     169     209 ..     112     242 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0014
                EEE--SSSSHHHHHHHGGGG CS
       AAA_5  3 lLvGppGtgKselaerlaaa 22
                +++Gp+G+gKs+l + + ++
  CTQ28335.1 38 VILGPSGSGKSTLLRTINHL 57
                689************99886 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.76
                 -.G-SEEEEESGGG--.HHHHHHHHHHHHSSEEE..-SSSEEE- CS
       AAA_5  64 r.egeilvlDEverae.sevlnsLlslleerrllleeggelvka 105
                   +++++++DE + a  +e ++++l ++ +  ++   g++lv +
  CTQ28335.1 169 AlNPRVILFDEPTSALdPELVGEVLDVIKKLARS---GTTLVVV 209
                 2588888888888887788888887777654444...5555554 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00026      0.13      14      49 ..      24      57 ..      16      58 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00026
      AAA_27 14 ftdrsldfsaeeadlhliyGpNEAGKstalrAisdl 49
                ++d sl+++     +++i+Gp  +GKst+lr i++l
  CTQ28335.1 24 LDDVSLEIP--PGTVTVILGPSGSGKSTLLRTINHL 57
                456677777..7889*****************9987 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00052      0.26      33      65 ..      22      54 ..      15      62 .. 0.87
   2 ?   -1.6   0.0       4.4   2.2e+03     132     175 ..     171     213 ..     151     221 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00052
       Rad17 33 ewlkadvLesrkkriLLisGPsGCgkstvvkvL 65
                ++l+  +Le  +  + +i GPsG gkst ++ +
  CTQ28335.1 22 KALDDVSLEIPPGTVTVILGPSGSGKSTLLRTI 54
                68889999999999**************99876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.4
       Rad17 132 dkklilvedlPnkfyrds.dalrevirkylrssealplilvitei 175
                 + ++il ++  +    ++   + +vi+k  rs+ +  l++v  ei
  CTQ28335.1 171 NPRVILFDEPTSALDPELvGEVLDVIKKLARSGTT--LVVVTHEI 213
                 55677777766777777767778899999888888..66666665 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00038      0.19       1      23 [.     232     254 ..     232     259 .] 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00038
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlr 23 
                 vE+g+s++++++p+HP T+  l+
  CTQ28335.1 232 VEQGSSDEVLNHPQHPRTRQFLS 254
                 8***************9987554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0022       1.1       3      66 ..      39     179 ..      37     220 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0022
                 EESSTTSSHHHHHHHHHHH.......H............THEEEEEETTTCSSS............................................. CS
         AAA   3 lyGppGtGKTllakavake.......l............gvefleisgsellsk............................................. 37 
                 + Gp G GK++l + + +        +            g +++e++ +e+l +                                             
  CTQ28335.1  39 ILGPSGSGKSTLLRTINHLervdegfIqidgdyigyrrkGDKLYEMKEKEILRQrinvgyvfqnfnlfphltvlenlieapiahqqvtrkeaiarayel 137
                 689**********99977633332220222222222222233555555555544677777777777777777777777777777777777777777777 PP

                 ............STTHHHHHHHHHHHHHHHTS.TSEEEEEET CS
         AAA  38 ............yvgesekkirelfkeakeka.kpsilfiDE 66 
                             +  + +   ++ ++ a++ a +p ++++DE
  CTQ28335.1 138 ldvvglrnkadaWSRHLSGGQQQRIAIARALAlNPRVILFDE 179
                 777777777777666666666666666776767778888887 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00093      0.48       3      20 ..      38      55 ..      36      69 .. 0.85
   2 ?   -1.1   0.0       3.8   1.9e+03      61      79 ..     159     178 ..     110     186 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00093
      AAA_28  3 vitGgestGKTtlleaLa 20
                vi+G++++GK+tll+ ++
  CTQ28335.1 38 VILGPSGSGKSTLLRTIN 55
                9*************8775 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.8
      AAA_28  61 eeqleee.aaaaankvlfcD 79 
                 +++++ + a a +++v+++D
  CTQ28335.1 159 QQRIAIArALALNPRVILFD 178
                 12222220222456666666 PP

>> RNA12  RNA12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00025      0.13      16      57 ..      33      76 ..      20     126 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
       RNA12 16 vntFivvkGPrGSGkkeLvldrvlkdrkk....vlvidCdelvkar 57
                + t +v+ GP GSGk+ L+  r++++ ++     + id d +   r
  CTQ28335.1 33 PGTVTVILGPSGSGKSTLL--RTINHLERvdegFIQIDGDYIGYRR 76
                67999*************9..6666655555568888888886644 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00038       0.2      22      51 ..      36      64 ..      24      71 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00038
                EEEEEESTTSSHHHHHHHHCCSHCCCCCCB CS
      NB-ARC 22 vvalvGmgGvGKttlakqilnksdevegrF 51
                v  + G  G+GK+tl++ i++  + v++ F
  CTQ28335.1 36 VTVILGPSGSGKSTLLRTINHL-ERVDEGF 64
                56799**************987.7766655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00047      0.24      19      53 ..      37      71 ..      30      86 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00047
  Zeta_toxin 19 illgGqpGAGKselaellkdelerqgnvvrldpDd 53
                 ++ G +G+GKs+l++ ++   + +++++++d+D 
  CTQ28335.1 37 TVILGPSGSGKSTLLRTINHLERVDEGFIQIDGDY 71
                5566899***********998889*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      629  (0.0350828); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 1922.40
//
Query:       CTQ28336.1  [L=308]
Description: ABC transporter, permease protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-16   60.0  18.1    2.5e-16   60.0  18.1    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   2.1     0.094   1.7e+03      33      61 ..      26      71 ..       7      76 .. 0.50
   2 !   60.0  18.1   1.4e-20   2.5e-16       2     183 ..      74     273 ..      69     275 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.094
  BPD_transp_1 33 fvlaillvlvf.................vilsilghlilpviilll 61
                  +vla++++ v+                 vil +lg++ l  ++ ++
    CTQ28336.1 26 LVLAVVIQSVAfnprwewgvfarwffdpVILEGLGQTLLLTLLGTV 71
                  2222222222245555555455555555555555555555555555 PP

  == domain 2  score: 60.0 bits;  conditional E-value: 1.4e-20
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf....................vilsilghlilpviillllsaapyvrlirraa 75 
                   +++G l+a   l++++ l+ l  ++i +++slP +v++i+l+ +                       +++lg+  + +++ l+l + +y+  i+r++
    CTQ28336.1  74 VIFGGLLAlarLSSSWLLSSLAWGYIWLFRSLPLIVVLIILYNFSylydtlslgipftgvtwasyQTINVLGQFST-AVVGLTLVQSAYTAEIIRGG 169
                   66777777899999999***********************99666999************9996544445555555.55666666779********* PP

  BPD_transp_1  76 lrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlva 172
                   +  ++++++eaa alG++ w++  +++lP+al++i+++ ++ +++l +g+++++ l+    +  l+ +++++y+ ++  + ++ ++++ +l+++ v+
    CTQ28336.1 170 FLGVDHGQYEAAAALGLPAWRRTLRIILPQALRTILPSGFNEIISLAKGTAMVYVLA----MPELFYTIQMIYNRTQEVIPLLMVGAAWYLAITSVL 262
                   *********************************************************....*************99999888888888999999999 PP

  BPD_transp_1 173 dilqrlldprv 183
                    ++q l+++ +
    CTQ28336.1 263 SAIQYLVERGL 273
                   99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2475.63
//
Query:       CTQ28337.1  [L=169]
Description: GCN5-related N-acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-12   46.2   0.2    6.2e-12   45.8   0.2    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.3e-08   34.0   0.0      3e-08   33.7   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    9.3e-08   32.4   0.1    1.3e-07   31.9   0.1    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0018   18.2   0.0     0.0034   17.3   0.0    1.4  1  Acetyltransf_13  ESCO1/2 acetyl-transferase
     0.0022   17.8   0.0     0.0031   17.4   0.0    1.2  1  NMT              Myristoyl-CoA:protein N-myristoyltransferase
     0.0059   16.7   0.1      0.014   15.5   0.1    1.7  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase
     0.0067   16.4   0.1       0.01   15.8   0.1    1.3  1  FR47             FR47-like protein
  ------ inclusion threshold ------
      0.082   13.0   0.0        0.1   12.7   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
       0.11   12.5   0.0       0.59   10.2   0.0    2.0  2  CIDE-N           CIDE-N domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.2   3.1e-15   6.2e-12      15     117 .]      33     132 ..      19     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 3.1e-15
                     HHHHHHHHHHHHHHHSTTCEEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHH CS
  Acetyltransf_1  15 pnedaseeefeesfsleaegllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaa 108
                      ++++ e e  e+   +  gl++  e++ge+i++  +++++    ++a+i +++ ++  r +Gl+ + +++le+ra   g+  i+l++   +  a
      CTQ28337.1  33 YFSRDAEVELSEWYVPPQ-GLFIvLEREGEIIATGAYKPKDR---HTAEIKRIWTHRRLRQQGLAAKVVQELERRAVLAGYSHIYLTTGFRQPEA 123
                     344444444444433344.555559*****************...9************************************************* PP

                     HHHHHHTTE CS
  Acetyltransf_1 109 irlYeklGF 117
                     ++lY   G+
      CTQ28337.1 124 VKLYLSQGY 132
                     ****77886 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.5e-11     3e-08      28     109 ..      48     135 ..      22     143 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.5e-11
  Acetyltransf_10  28 egealllvaeeggkivGviel..rdgs..hisllfVdpeyrgqGigkaLleaveeeaekdgikl..eltvnaspyavpfYeklGFkav 109
                       ++ l++v+e++g+i+ ++++  +d++  +i ++  ++  r+qG++++ ++++e++a  +g+++   +t   +p+av++Y ++G++a 
       CTQ28337.1  48 PPQGLFIVLEREGEIIATGAYkpKDRHtaEIKRIWTHRRLRQQGLAAKVVQELERRAVLAGYSHiyLTTGFRQPEAVKLYLSQGYEAQ 135
                      5677899*********77777424444899**************************999*99999555556888***********986 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   6.5e-11   1.3e-07       2      75 ..      50     133 ..      49     134 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 6.5e-11
                     TEEEEEEEETTEEEEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH.TT....SEEEEEEEEE....THHHHHHHHHHTTEE CS
  Acetyltransf_7   2 kgevfVaeddgkivGfialslld...aeitrlaVdpeyrgkGiGraLlea.ae....kgiileqlel....naekaikfYeklGFe 75 
                     +g ++V+e++g+i+ + a+++ d   aei+r++++   r +G++ + ++  ++     g+   + +l    ++++a+k+Y + G+e
      CTQ28337.1  50 QGLFIVLEREGEIIATGAYKPKDrhtAEIKRIWTHRRLRQQGLAAKVVQElERravlAGYS--HIYLttgfRQPEAVKLYLSQGYE 133
                     67899***********9*9999999999999*****************9632234555633..345522433249**********8 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.7e-06    0.0034       7      34 ..      78     105 ..      75     123 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.7e-06
  Acetyltransf_13   7 isriWvssshRrkgiAtkLldaarenfi 34 
                      i+riW+++  R++g+A k ++ + ++ +
       CTQ28337.1  78 IKRIWTHRRLRQQGLAAKVVQELERRAV 105
                      89****************9998877655 PP

>> NMT  Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.6e-06    0.0031     105     157 ..      72     124 ..      61     126 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.6e-06
                 EEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEEEEESSTSSSES CS
         NMT 105 vlklveinfLcvhkklRskrlapvlikEitRrvnlkgifqavytagvvlpkpv 157
                   +++ei+ +  h++lR++ la  +++E+ Rr  l g  +   t+g   p+ v
  CTQ28337.1  72 DRHTAEIKRIWTHRRLRQQGLAAKVVQELERRAVLAGYSHIYLTTGFRQPEAV 124
                 567899999****************************9888889998877766 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.1   6.2e+03      17      35 ..      33      50 ..      24      51 .. 0.66
   2 !   15.5   0.1   7.1e-06     0.014       7      52 ..      58     103 ..      52     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.1
  Acetyltransf_CG 17 YevrkegvldfthTeVpee 35
                     Y  +++ ++++   +Vp++
       CTQ28337.1 33 YF-SRDAEVELSEWYVPPQ 50
                     43.4556777777788775 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 7.1e-06
  Acetyltransf_CG   7 degeevafleYevrkegvldfthTeVpeelrGkGiAkkLvkaaldd 52 
                      +ege +a+  Y+ ++ ++ ++  + ++ +lr +G+A+k v++    
       CTQ28337.1  58 REGEIIATGAYKPKDRHTAEIKRIWTHRRLRQQGLAAKVVQELERR 103
                      368999******9999************************987655 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1     5e-06      0.01      21      80 ..      75     135 ..      55     140 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5e-06
                 TSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S.-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  21 ggelgalqvlpehrrrGlgsrlvkalakeiaergk.tvllvvvasNtpsirlyeklGfeki 80 
                   e+  + ++   r++Gl+ ++v++l ++ + +g+ ++ l ++    ++ +ly + G+e+ 
  CTQ28337.1  75 TAEIKRIWTHRRLRQQGLAAKVVQELERRAVLAGYsHIYLTTGFRQPEAVKLYLSQGYEAQ 135
                 57899999*******************99888775378899999**********9999986 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.3e-05       0.1      49     136 ..      50     134 ..      37     151 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.3e-05
  Acetyltransf_4  49 eyvflvae.sdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFel 136
                     + +f v+e +++i+++ +++ +k+  +  + +  ++  +r  +++gl+ + ++ le ++   ++  ++  +   + ++++++ + G+e 
      CTQ28337.1  50 QGLFIVLErEGEIIATGAYK-PKD--RHTAEIKRIWT-HRRLRQQGLAAKVVQELERRAVLAGYSHIYLTTGFRQPEAVKLYLSQGYEA 134
                     5689****************.677..44444455777.688******************999******999989999*********986 PP

>> CIDE-N  CIDE-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.55   1.1e+03      38      57 ..      49      68 ..      40      71 .. 0.77
   2 ?   10.2   0.0    0.0003      0.59       5      30 ..      80     105 ..      77     130 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.55
                STT-EEEETTTT-EE.SCCC CS
      CIDE-N 38 seevtlvLeeDGTeVddeey 57
                ++ + +vLe  G ++ +  y
  CTQ28337.1 49 PQGLFIVLEREGEIIATGAY 68
                67788999999988877766 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0003
                 EEEETTSS-EEEEEESSHHHHHHHHH CS
      CIDE-N   5 kvrdvkrekkkgvaakslkeLlekga 30 
                 ++++++r ++ g+aak ++eL +++ 
  CTQ28337.1  80 RIWTHRRLRQQGLAAKVVQELERRAV 105
                 89*******************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       251  (0.0139997); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1423.56
//
Query:       CTQ28338.1  [L=310]
Description: Periplasmic binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-40  137.8   0.2    4.3e-40  137.5   0.2    1.1  1  SBP_bac_3        Bacterial extracellular solute-binding prote
  ------ inclusion threshold ------
       0.12   12.6   0.0       0.22   11.8   0.0    1.5  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   0.2   4.8e-44   4.3e-40       3     223 ..      65     292 ..      63     294 .. 0.89

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 4.8e-44
                 EEE-S.-BTTTB.EE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxx.xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   3 vgvda.dypPfs.ykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 v+v a ++pP + + d+n++l G + d+a+ +a++lg++v +vp+sw++   +++sgk+D+ai++it+t+eR+ek+dF + y + +++++v++  +s  
  CTQ28338.1  65 VAVAAlNSPPLTvFADDNKTLLGSEADIARLVAESLGLEVNVVPTSWEDWPLGVTSGKYDAAISNITVTKERKEKFDFAT-YRKDSLGFYVKS--TSPL 160
                 55555588887616666**************************************************************6.**********94..4578 PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC......TSEE...EEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE.ECGGCECEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkk......gaei...vefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv.eeplsseeya 188
                 s+i++ +d++g k+ v  g+++e++l  ++++      +      v+++++++ ++aL++gr+da+++ +++ a+ ++  ++ k+v + ++   ++   
  CTQ28338.1 161 SKIDKAEDIAGLKIIVGSGTNQEAILLAWNAEnvkkglK--PfipVYTKDDAAQTLALQTGRADAFFGPNVIGAWKAALTGKTKLVGSvDGGWPKAAHI 257
                 9************************99877775555441..1444566777777999******************************988899999999 PP

                 EEEETTTHHHHHHHHHHHHHHHHTTHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 189 iavrkgdseLrkainkalaelkadgtlakisekWf 223
                 ++  k+ds L++a+++al+  +a+g +ak  ++W+
  CTQ28338.1 258 AVTLKKDSGLVNAVQAALNGAIASGDYAKVLNRWG 292
                 9999******************************7 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.4e-05      0.22      74     100 ..     118     144 ..      64     157 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.4e-05
                      HHTTS-SEE-SS-B--HHHHTTSEEES CS
  Lig_chan-Glu_bd  74 llekkadlavapltitaeReevvdFtk 100
                      + ++k d a++++t+t+eR+e  dF++
       CTQ28338.1 118 VTSGKYDAAISNITVTKERKEKFDFAT 144
                      56789********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2373.67
//
Query:       CTQ28339.1  [L=437]
Description: putative monooxygenase MoxC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-63  215.3   2.2      2e-63  214.7   2.2    1.3  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.7   2.2   1.1e-67     2e-63       6     306 ..      20     376 ..      17     402 .. 0.87

  Alignments for each domain:
  == domain 1  score: 214.7 bits;  conditional E-value: 1.1e-67
  Bac_luciferase   6 flptrqggalgaasaslrylvelaraaEelGfdavwvaehhggpgga.......ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatL 93 
                     ++++r+++a+ +as++++ + + a +aE+ ++d+++va+++ ++ ++       ++++t+l+alaa T+r++l  + ++ y  +P+++A+q+a+L
      CTQ28339.1  20 MSAWRHPAAQADASINFDFVTQTALKAEAGKLDFIFVADGLYINEKSiphflnrFEPLTVLSALAAITRRLGLVGTLSTSY-SEPFTTARQFASL 113
                     67899999999999******************************999**********************************.************* PP

  Bac_luciferase  94 dhlsgGRfglglgtggpaveerrfGv....dhderyarlrEfvevlrrlwrg.....................eevdfeGeffsvkgalllprpg 163
                     dhls+GR+g++++t+  +  +++f++    dh+ ry+ ++E+++v+++lw +                     ++ d++G+ff+v+g+l++ r++
      CTQ28339.1 114 DHLSQGRAGWNVVTSPLEGSAKNFSRaqhpDHALRYRIADEYLQVVKGLWDSweedafvrnketgqffdknklHTLDHHGDFFKVAGPLNIARTP 208
                     **************************************************5588899***************8888******************9 PP

  Bac_luciferase 164 qgpiP.vyvaaaspaglelaarhadglllageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraea...raliagld..... 249
                     qg +P ++ a+as++g +laarhad++++++ +++ea++++++++++ a++ r+p+++ +  +++viv+d++e+A++++   +al+ ++      
      CTQ28339.1 209 QG-RPiIFQAGASDDGKKLAARHADAIFTHQDSLAEAQAFYRDVKSQLAAYQRSPDQLHIFQGVSVIVGDDAEDAERQYqttAALV-SIEdalny 301
                     99.**77888888******************************************************************7754444.33368888 PP

  Bac_luciferase 250 ...........fyaldsegagreaeaaeiqeeedanlwagaadav..pdelvaatal......vGtpeqvaerlaa 306
                                +y+ld+++++ ++ + ++++  +  + +++a+ +  + ++va  a+       Gt+ +va+ l+ 
      CTQ28339.1 302 lgryfehhdfsQYPLDEPFPDIGDLGQNSFRSTTD-EIKRHARERglTLRQVALEAAsprprfTGTASDVADGLQL 376
                     88999999999999999999888766654333322.2222222220133333333336678888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3227.21
//
Query:       CTQ28340.1  [L=373]
Description: Uncharacterized hydrolase YxeP [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-30  105.0   0.5    5.4e-30  104.6   0.5    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    8.9e-12   44.9   0.0    2.1e-11   43.7   0.0    1.6  1  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.5     6e-34   5.4e-30       1     206 [.      63     367 ..      63     368 .. 0.90

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 6e-34
                    EEEEES-BSS.TTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEE CS
                    xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVp.eeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdav 94 
                    +l++++D++p ee t g   p++++++ G+++++G+d ++   l+a+ +l++ ++e    +g +++lfqp+EE   gGak l+  g++  e+v a+
     CTQ28340.1  63 ALRADIDALPiEEAT-GL--PYRSQNQ-GVMHACGHDIHTSVMLGAALLLKEREAEL---PGRVRILFQPAEENF-GGAKTLIRaGAL--EEVSAI 148
                    69********66666.55..*****88.************************88887...*************54.999*****7666..69**** PP

                    EEEEEESSSBTCHSTETEEEE........................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxx........................................................................... RF
  Peptidase_M20  95 felhieepgileagklaigvv........................................................................... 115
                    f++h e pg+++ g++a + +                                                                           
     CTQ28340.1 149 FGMHNE-PGLPV-GEFATRGGafyanvdrfvfkvtgkgahaarphegrdaillasqlvtvlqsvasrevntldsvvlsvtriqggntwnvlpesve 242
                    ****77.*****.99888888*************************************************************************** PP

                    .................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHH.TTTE.EEEEEE CS
                    .................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxx RF
  Peptidase_M20 116 .................................kvevelleggapvtlndsplvkalaeaaeelfgekvelivsgpggtdarff.agip.tvmifg 176
                                                     +++v +  +g+ + +nd++++++++e+a ++ g++++    + gg+d++ + ++ip +++ +g
     CTQ28340.1 243 legtlrthssevqqrvkarvseiaagfasafgaQIDVFW-YAGPTALVNDARWADFASEVAAQA-GYRTHHADLHLGGEDFAVYlQHIPgAFVSIG 336
                    ******************************964466663.588888889**************8.*88555433359*******8999945566** PP

                    SSG.GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 177 pgs.glaHspnEyvdledlekgikvlarlle 206
                      s  + H+p  + d++ ++ ++ ++arl+e
     CTQ28340.1 337 SASeYGLHHPAFNPDERLIAPAAHYFARLAE 367
                    5544999***99999************9987 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   2.4e-15   2.1e-11       8     101 ..     175     266 ..     165     272 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 2.4e-15
                 EEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHH CS
   M20_dimer   8 ggkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeil 101
                  +  +v+gk++H++ p+ g++Ai ++++l++ l++  +++   ++l    l+vt i+gG+  nv+p+++e++ ++R+   e  ++v++++ ei+
  CTQ28340.1 175 RFVFKVTGKGAHAARPHEGRDAILLASQLVTVLQSVASREV--NTLDSVVLSVTRIQGGNTWNVLPESVELEGTLRTHSSEVQQRVKARVSEIA 266
                 45677*******************************99977..***********************************9999999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2806.66
//
Query:       CTQ28341.1  [L=335]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-29  102.7  12.7    1.2e-28  100.5  12.7    1.8  1  Bac_luciferase   Luciferase-like monooxygenase
     0.0088   16.5   0.0      0.029   14.9   0.0    2.0  2  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5  12.7   1.3e-32   1.2e-28      15     309 ..      17     296 ..       3     298 .. 0.75

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 1.3e-32
  Bac_luciferase  15 lgaasaslrylvelaraaEelGfdavwvaehhggpgga.ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGRfglglgt. 107
                      +aa ++l++++ la++aE++G++++wvaehh+ ++ a +++  ++a+l+++T+rirlg++ ++l  ++P+ +A+ +  L  l++GR++lg+g+ 
      CTQ28341.1  17 ETAA-QALARTLTLAQHAEAWGYHRFWVAEHHNTDQLAsPSPELVIAWLLGHTRRIRLGSGGVMLQHYSPYKVAENFNLLAALAPGRIDLGVGKa 110
                     3344.59**************************99998*******************************************************98 PP

  Bac_luciferase 108 .ggpaveerrfGv.dhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgpiPvyvaaaspaglelaarhadglllageppeeaa 200
                      gg +  +r+  +  h+e    +++ +  l  +++    +  Ge  s++ + + pr ++g    ++ +as +++elaar  d+ +++ +++    
      CTQ28341.1 111 pGGLPLSTRALQQgLHQEEKGTFADQLAQLDNWLSLT--EPGGEE-SLRATPIPPRRADG----FLLGASLESAELAARL-DWNFVFAAHLNGDS 197
                     8888888777744566666666666666666666222..234555.55666666777666....9999999*******97.88888887777777 PP

  Bac_luciferase 201 elierlragaaeagrdpadirvgisltvivadteeeAraearaliagld...fyaldsegagreaeaaeiqeeedanlwagaadavpdel..vaa 290
                     +l + +  +++e + +    + ++++ v+vad+++ A a a++   ++    + +             + + e +a ++a++a ++p ++   ++
      CTQ28341.1 198 ALRRAVFNRWRELSPR----EAMVAVQVVVADDPATAAALAQQVEVWGVeleNGQRV-----------TVGSEAQAVAFARQAGSRPTRIarRES 277
                     7777777755556664....669******************7766555332222222...........334444444444444444222200344 PP

  Bac_luciferase 291 talvGtpeqvaerlaayae 309
                      ++ Gtpeqv +rl+a+++
      CTQ28341.1 278 SLISGTPEQVKARLDALQA 296
                     457***********99875 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.3e-06     0.029       8      34 ..      24      53 ..      17      90 .. 0.82
   2 ?   -3.0   0.0       1.2   1.1e+04      30      43 ..     226     239 ..     219     266 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.3e-06
  Glyco_tranf_2_4  8 pefla...hhlalgfdrilvydndstDgtr 34
                      ++l+   h++a+g++r++v+++++tD+ +
       CTQ28341.1 24 ARTLTlaqHAEAWGYHRFWVAEHHNTDQLA 53
                     5555444499*****************975 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.2
  Glyco_tranf_2_4  30 tDgtrailkelpev 43 
                      ++ t+a l+++ ev
       CTQ28341.1 226 DPATAAALAQQVEV 239
                      44577777776553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2502.38
//
Query:       CTQ28342.1  [L=183]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00011   22.3   0.0    0.00033   20.8   0.0    1.7  2  SKI              Shikimate kinase
    0.00016   21.8   0.1    0.00023   21.4   0.1    1.7  1  AAA_33           AAA domain
     0.0002   21.9   0.0    0.00046   20.7   0.0    1.7  2  AAA_18           AAA domain
     0.0002   21.6   0.3    0.00044   20.5   0.0    2.0  2  AAA_28           AAA domain
    0.00021   21.6   0.0     0.0024   18.1   0.0    2.1  2  AAA_22           AAA domain
    0.00091   19.0   0.0     0.0013   18.5   0.0    1.2  1  Cytidylate_kin   Cytidylate kinase
     0.0019   18.6   0.0     0.0034   17.8   0.0    1.6  1  AAA_16           AAA ATPase domain
     0.0058   16.6   0.0      0.012   15.6   0.0    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0068   16.8   0.0      0.011   16.2   0.0    1.4  1  AAA              ATPase family associated with various cellul
     0.0074   16.2   0.0      0.021   14.7   0.0    1.7  2  NACHT            NACHT domain
  ------ inclusion threshold ------
      0.013   15.9   0.0       0.02   15.3   0.0    1.3  1  RNA_helicase     RNA helicase
      0.013   16.0   0.0      0.024   15.2   0.0    1.4  1  ABC_tran         ABC transporter
      0.014   15.3   0.2        2.2    8.1   0.0    2.3  2  Ploopntkinase3   P-loop Nucleotide Kinase3
      0.025   14.4   0.0      0.046   13.6   0.0    1.4  1  CPT              Chloramphenicol phosphotransferase-like prot
      0.037   13.8   0.0      0.058   13.1   0.0    1.3  1  PRK              Phosphoribulokinase / Uridine kinase family
      0.052   13.6   0.0      0.081   13.0   0.0    1.3  1  DUF87            Helicase HerA, central domain
      0.061   13.8   0.0       0.15   12.5   0.0    1.6  1  AAA_17           AAA domain
      0.066   13.3   0.0       0.11   12.6   0.0    1.5  1  MMR_HSR1         50S ribosome-binding GTPase
       0.07   13.2   0.0       0.12   12.4   0.0    1.4  1  Cytidylate_kin2  Cytidylate kinase-like family
      0.075   12.8   0.5       0.17   11.6   0.5    1.5  1  AAA_29           P-loop containing region of AAA domain
      0.094   12.6   0.0       0.21   11.5   0.0    1.5  2  RsgA_GTPase      RsgA GTPase
      0.097   11.8   0.1       0.13   11.4   0.1    1.1  1  C-C_Bond_Lyase   C-C_Bond_Lyase of the TIM-Barrel fold
       0.14   12.1   0.0       0.21   11.5   0.0    1.3  1  APS_kinase       Adenylylsulphate kinase
       0.18   11.0   0.0       0.24   10.5   0.0    1.2  1  NB-ARC           NB-ARC domain
       0.21   11.3   0.0       0.33   10.6   0.0    1.3  1  AAA_24           AAA domain
        0.3   10.9   0.0        0.4   10.4   0.0    1.2  1  ATP_bind_1       Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   4.8e-07   0.00033       1      26 [.       9      34 ..       9      46 .. 0.94
   2 ?   -1.7   0.1       4.1   2.8e+03     119     141 ..     140     163 ..     119     178 .. 0.54

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4.8e-07
                TTSSHHHHHHHHHHHHTSEEEEHHHH CS
         SKI  1 mGaGKstvGkllAkklglefiDlDel 26
                +G+GKst++++lA++l+l++i+lD+l
  CTQ28342.1  9 SGSGKSTLARRLAHRLELPWIELDRL 34
                59**********************97 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.1
                 HHHHHHH.HHHHHHCCSSCEEEEC CS
         SKI 119 elleela.ereplyeeaadvvvde 141
                 ++++ la  ++p y+++  v v++
  CTQ28342.1 140 HRRRYLAdMQDPQYRHIRFVRVRN 163
                 333334444445555544444444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   3.3e-07   0.00023       4      32 ..       5      33 ..       3     179 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3.3e-07
      AAA_33  4 lvGlpGsGKstlaerllkklgavllssdt 32
                +vG +GsGKstla+rl+ +l    ++ d 
  CTQ28342.1  5 VVGTSGSGKSTLARRLAHRLELPWIELDR 33
                79***************999866666655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   6.7e-07   0.00046       1      30 [.       3      33 ..       3      72 .. 0.80
   2 ?   -2.0   0.0       7.3     5e+03      36      66 ..     144     176 ..     139     182 .. 0.50

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 6.7e-07
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf.gvnlrd 30
                I + Gt+G+GK+tla++L+ rl++ +++l  
  CTQ28342.1  3 INVVGTSGSGKSTLARRLAHRLELpWIELDR 33
                5689***************998766544444 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 7.3
      AAA_18  36 glllevdpe.aldeskrlded.kldklldalee 66 
                 +l +++dp+  + ++ r++ + + ++ll++le+
  CTQ28342.1 144 YLADMQDPQyRHIRFVRVRNPrQAEALLRELEA 176
                 566666666633333333333033444555554 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   6.4e-07   0.00044       2      32 ..       3      33 ..       2     109 .. 0.86
   2 ?   -1.6   0.1       4.2   2.9e+03      33      40 ..     143     150 ..     119     180 .. 0.56

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 6.4e-07
      AAA_28  2 ivitGgestGKTtlleaLaar.gypvvpEaar 32
                i ++G++++GK+tl+++La r + p++ E  r
  CTQ28342.1  3 INVVGTSGSGKSTLARRLAHRlELPWI-ELDR 33
                889****************99899998.4555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.2
      AAA_28  33 eileekla 40 
                 ++l + ++
  CTQ28342.1 143 RYLADMQD 150
                 33333333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.5e-06    0.0024      10      30 ..       5      25 ..       2      59 .. 0.87
   2 ?    1.5   0.0      0.47   3.3e+02      44      84 ..     128     176 ..      92     182 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.5e-06
      AAA_22 10 vtGesGtGKTtllrrlleqld 30
                v+G sG+GK+tl+rrl+++l+
  CTQ28342.1  5 VVGTSGSGKSTLARRLAHRLE 25
                89****************985 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.47
      AAA_22  44 fvtlpsstsskdllrellralglelka........erlsseellealeq 84 
                 ++ l  ++++++ +r+ l ++++++ +        ++ + e+ll+ le 
  CTQ28342.1 128 SIILWTLKTWRQHRRRYLADMQDPQYRhirfvrvrNPRQAEALLRELEA 176
                 5556667788888888888888888888888877777777777766665 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.9e-06    0.0013       2      33 ..       4      35 ..       3      43 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.9e-06
                    EEE-STTSSHHHHHHHHHHHHT-EEEEHHHHH CS
  Cytidylate_kin  2 aiDGPagsGKssvaralaeklglkyldtgalY 33
                     + G +gsGKs++ar+la++l+l +++   lY
      CTQ28342.1  4 NVVGTSGSGKSTLARRLAHRLELPWIELDRLY 35
                    67799*******************99988888 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.9e-06    0.0034      27      51 ..       3      27 ..       1     109 [. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.9e-06
      AAA_16 27 vllsGesGvGKsslvrellralekd 51
                + ++G sG+GKs+l+r+l+++le  
  CTQ28342.1  3 INVVGTSGSGKSTLARRLAHRLELP 27
                5699****************99877 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.7e-05     0.012       4      26 ..       5      27 ..       2      32 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.7e-05
                EE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5  4 LvGppGtgKselaerlaaalnre 26
                +vG +G+gKs+la+rla++l+ +
  CTQ28342.1  5 VVGTSGSGKSTLARRLAHRLELP 27
                69*****************9655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.6e-05     0.011       3      49 ..       5      51 ..       3      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.6e-05
                EESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakelgvefleisgsellskyvgesekkirel 49
                ++G+ G GK++la+ +a+ l+ + +e++    + +++g+  + + + 
  CTQ28342.1  5 VVGTSGSGKSTLARRLAHRLELPWIELDRLYWRPNWQGAPDEAFFAA 51
                78**************************9999998888877665555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.1e-05     0.021       5      24 ..       5      24 ..       2      34 .. 0.88
   2 ?   -2.0   0.0       4.4     3e+03     122     141 ..     129     147 ..     117     174 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.1e-05
                EEC-TTTCHHHHHHHHHHHH CS
       NACHT  5 lqGeaGsGKTtLlqklalaw 24
                + G +GsGK+tL+++la+ +
  CTQ28342.1  5 VVGTSGSGKSTLARRLAHRL 24
                89***************987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.4
                 EEEEEEECCCHHHHCTTSSC CS
       NACHT 122 sllltvrpralrdleeqlee 141
                  +l+t+++ +  + +++l++
  CTQ28342.1 129 IILWTLKTWRQ-HRRRYLAD 147
                 34444444332.44444443 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0   2.9e-05      0.02       3      38 ..       5      38 ..       3      49 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.9e-05
  RNA_helicase  3 lyGpsgeGKStlakeLakallkklklkkkdsvysrn 38
                  ++G sg GKStla++La++l+  l  ++ d++y+r+
    CTQ28342.1  5 VVGTSGSGKSTLARRLAHRLE--LPWIELDRLYWRP 38
                  89*****************99..5557777888776 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   3.4e-05     0.024      14      34 ..       3      23 ..       1      30 [. 0.87

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.4e-05
                EEEEESTTSSHHHHHHHHTTS CS
                xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagl 34
                + +vG +G+GKStL++ la+ 
  CTQ28342.1  3 INVVGTSGSGKSTLARRLAHR 23
                578************999876 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0033       2.2       6      30 ..       3      27 ..       1      43 [. 0.83
   2 ?    4.9   0.3     0.031        21     124     153 ..     135     164 ..     132     182 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0033
  Ploopntkinase3  6 iylvGqPGaGkstlmaeltkgfdrs 30
                    i +vG+ G+Gkstl   l++ ++  
      CTQ28342.1  3 INVVGTSGSGKSTLARRLAHRLELP 27
                    779************9999887765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.031
  Ploopntkinase3 124 dawrkarskklgrvqneswvkgrlsasrkl 153
                     ++wr++r + l  +q++ + + r   +r+ 
      CTQ28342.1 135 KTWRQHRRRYLADMQDPQYRHIRFVRVRNP 164
                     68*****************99999888874 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.7e-05     0.046       7      32 ..       6      31 ..       2      39 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.7e-05
                EE-TTSSHHHHHHHHHHHSSS-EEEE CS
         CPT  7 nGgsssGKsslaralqevldepwlhl 32
                 G+s sGKs+lar l + l+ pw++l
  CTQ28342.1  6 VGTSGSGKSTLARRLAHRLELPWIEL 31
                59*********************987 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.4e-05     0.058       2      27 ..       3      28 ..       2      36 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.4e-05
         PRK  2 IgvagsSGaGkttvarklekifgrek 27
                I v g SG+Gk+t+ar+l ++++  +
  CTQ28342.1  3 INVVGTSGSGKSTLARRLAHRLELPW 28
                8899**************99998655 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00012     0.081      28      47 ..       5      24 ..       1      27 [. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00012
       DUF87 28 ilgsTGsGKSntvavLleel 47
                ++g++GsGKS++++ L ++l
  CTQ28342.1  5 VVGTSGSGKSTLARRLAHRL 24
                99**************9987 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00021      0.15       1      24 [.       6      29 ..       6      32 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00021
                EE-TTSSHHHHHHHHHHHHTEEEE CS
      AAA_17  1 lGgPGsGKgtqceklvekygfthl 24
                +G  GsGK+t++++l+++++++ +
  CTQ28342.1  6 VGTSGSGKSTLARRLAHRLELPWI 29
                699**************9999876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00016      0.11       2      22 ..       3      23 ..       2      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00016
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                + +vG + +GKStL ++l  +
  CTQ28342.1  3 INVVGTSGSGKSTLARRLAHR 23
                679***************864 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00018      0.12       2      28 ..       3      29 ..       2      34 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00018
  Cytidylate_kin2  2 ITIsreyGsgGetigeaLAekLglpfy 28
                     I + ++ Gsg++t++++LA++L+lp +
       CTQ28342.1  3 INVVGTSGSGKSTLARRLAHRLELPWI 29
                     6677899****************9976 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.5   0.00025      0.17      27      38 ..       5      16 ..       2      17 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
      AAA_29 27 ltGpsGsGKSTl 38
                ++G+sGsGKSTl
  CTQ28342.1  5 VVGTSGSGKSTL 16
                79*********8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0003      0.21     104     124 ..       5      25 ..       2      33 .. 0.86
   2 ?   -2.6   0.0       6.3   4.3e+03      70     100 ..     146     177 ..     136     180 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0003
                  EECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase 104 lvGqSGvGKStLinallpele 124
                  +vG SG GKStL  +l+ +le
   CTQ28342.1   5 VVGTSGSGKSTLARRLAHRLE 25 
                  79*************998766 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.3
                  HHHHHTTSEEE.E--TTTHTTHHHHHHHCTTS CS
  RsgA_GTPase  70 eelealgyevl.lvsaktkegleelkellkdk 100
                  +++++ +y+ + +v++++ +++e+l ++l+ +
   CTQ28342.1 146 ADMQDPQYRHIrFVRVRNPRQAEALLRELEAQ 177
                  55555555433377888888888888888765 PP

>> C-C_Bond_Lyase  C-C_Bond_Lyase of the TIM-Barrel fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00018      0.13      59      97 ..     134     177 ..     125     182 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
  C-C_Bond_Lyase  59 lkelaeaekek.....ekeelpllFvRvRspeqlkellerlgea 97 
                     lk++++++++      + + + + FvRvR+p+q+++ll++l+++
      CTQ28342.1 134 LKTWRQHRRRYladmqDPQYRHIRFVRVRNPRQAEALLRELEAQ 177
                     555555444446665567788999***************99654 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00031      0.21       5      27 ..       3      25 ..       1      34 [. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00031
                EEEESSTTSSHHHHHHHHHHHHH CS
  APS_kinase  5 vwltGlsgsGKstianalekkLv 27
                + + G sgsGKst+a++l+++L+
  CTQ28342.1  3 INVVGTSGSGKSTLARRLAHRLE 25
                5578***************9996 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00035      0.24      23      44 ..       3      24 ..       1      52 [. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00035
                EEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC 23 valvGmgGvGKttlakqilnks 44
                + +vG  G+GK+tla+   + +
  CTQ28342.1  3 INVVGTSGSGKSTLARRLAHRL 24
                689************9988874 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00048      0.33       4      25 ..       2      22 ..       1      33 [. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00048
      AAA_24  4 kiliyGpsgiGKTtlakelgpk 25
                +i ++G sg+GK+tla++l  +
  CTQ28342.1  2 NINVVGTSGSGKSTLARRL-AH 22
                67899************99.44 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00058       0.4       1      21 [.       5      25 ..       5      33 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00058
  ATP_bind_1  1 vvGpaGsGKttfvgalseile 21
                vvG+ GsGK+t+ ++l+  le
  CTQ28342.1  5 VVGTSGSGKSTLARRLAHRLE 25
                89***********99988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1402.91
//
Query:       CTQ28343.1  [L=295]
Description: putative nucleic acid-binding regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-40  137.5   3.1      6e-40  136.9   3.1    1.3  1  LysR_substrate  LysR substrate binding domain
    2.6e-21   75.3   1.8    5.5e-21   74.3   1.8    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.028   14.5   0.5       0.11   12.6   0.5    2.0  1  HTH_20          Helix-turn-helix domain
      0.058   14.0   0.0       0.13   12.9   0.0    1.5  1  Mga             Mga helix-turn-helix domain
      0.082   13.0   0.0       0.25   11.4   0.0    1.8  1  Cro             Cro


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.9   3.1   1.7e-43     6e-40       2     206 ..      90     295 .]      89     295 .] 0.98

  Alignments for each domain:
  == domain 1  score: 136.9 bits;  conditional E-value: 1.7e-43
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEE.EEEEEEEEETTSGGGG.SS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLa.eeplvlvaspdhpLar.ge 94 
                     ++++g Lri+a +++a+ +l p+l+ f+ +yP++ +e+++++   l d + ++ +D+++r+g++   +++a+++a + ++ +v sp++ L r g+
      CTQ28343.1  90 ERPAGNLRITAGEHAASAVLWPALKPFMLQYPDINIEITVDN--GLTDIVGDR-FDAGVRLGEQVAKDMIAVRIApDMRMAVVGSPAY-LQRaGT 180
                     6899**************************************..*********.*********************999**********.**99** PP

                     SECGGGGCTSEEEEESTTST...HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEE CS
  LysR_substrate  95 pvsledLadeplilleegsg...lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relyl 185
                     p ++ dLa++++i l+ +++   + +++ +  re ++++++ l +nsl   +++++aGlG+a++p+  v+++la+grlv ++l+e+++    ++l
      CTQ28343.1 181 PQTPWDLAQHRCINLRLPTRgglYAWEFARDGREIQVRVEGQLILNSLPQRIDAAEAGLGLAYVPDDCVAEALASGRLV-RVLAEWTPAfPGYHL 274
                     ***************88888899********************************************************.*************** PP

                     EEETTCCCHHHHHHHHHHHHH CS
  LysR_substrate 186 vyrkgrelspavrafidflre 206
                     +y+++r++++a+  +++ lr+
      CTQ28343.1 275 YYPSRRQHTSAFTLLLETLRR 295
                     *****************9985 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   1.8   1.5e-24   5.5e-21       2      60 .]       7      65 ..       6      65 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 1.5e-24
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++l  f  va+e+sftrAA +Lg+sq+a+s++++ LE +l+v+L++Rt+r++++TeaGe
  CTQ28343.1  7 NDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRHLETRLDVRLLTRTTRSVVPTEAGE 65
                68999*****************************************************7 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5     3e-05      0.11      20      49 ..      14      43 ..       8      57 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3e-05
                STCTTB-HHHHHHHHTS-HHHHHHHHHHHH CS
      HTH_20 20 araegltaselaerldlskntlsyHLrvLe 49
                  a++++++  a++l++s++ ls+ +r Le
  CTQ28343.1 14 VVARERSFTRAAAQLGVSQSALSHAMRHLE 43
                57899************************8 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.6e-05      0.13      21      59 ..       9      47 ..       3      54 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.6e-05
                HHHHHHHHSEEEHHHHHHHCT--HHHHHHHHHHHHHHCH CS
         Mga 21 llkflfeeeevsieelaqelyiSestlkrkikelnklLk 59
                ll f++  +e s+++ a++l +S+s l + +++l+ +L 
  CTQ28343.1  9 LLSFMVVARERSFTRAAAQLGVSQSALSHAMRHLETRLD 47
                8999999****************************9985 PP

>> Cro  Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.9e-05      0.25      16      34 ..      22      40 ..      15      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.9e-05
                HHHHHHHTS-HHHHHHHHH CS
         Cro 16 aktAkdlgvkqsaIsKAlk 34
                +++A +lgv qsa+s A++
  CTQ28343.1 22 TRAAAQLGVSQSALSHAMR 40
                79***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2271.91
//
Query:       CTQ28344.1  [L=484]
Description: L-asparagine transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.2e-126  423.2  40.9   1.4e-126  422.9  40.9    1.0  1  AA_permease    Amino acid permease
    4.5e-42  144.4  44.3    5.7e-42  144.0  44.3    1.0  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  422.9  40.9  1.6e-130  1.4e-126       2     477 ..      35     475 ..      34     477 .. 0.97

  Alignments for each domain:
  == domain 1  score: 422.9 bits;  conditional E-value: 1.6e-130
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  v++ia+gg+iGtglf+g g  l+ aGp+ a l+yl++g+++f++ ++lge++ + p+sg+f  ya++flg+++++v G++y+++w+++ ++++ta++ 
   CTQ28344.1  35 VQMIAIGGAIGTGLFLGAGARLQMAGPALA-LVYLVCGIFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFVNWAMTGIVDITAVAL 131
                  9**************************555.******************************************************************* PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga..gfrflgdngsifknnlppgfakeee 195
                  ++++w+ + d+p +wv+++  l+++ ++n++gvk+++e+ef++al+k++ai+af++vg i+l +gkp +g+  gf+ ++dng+    ++p+g      
   CTQ28344.1 132 YMHYWGAFGDVP-QWVFALGALAIVGTMNMIGVKWFAEMEFWFALVKVLAIVAFLVVGTIFLGSGKPLDGNatGFHLITDNGG----FFPHG------ 218
                  ************.*********************************************99********9999***********....*****...... PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplin 293
                    ++  +++ + vvfaf++ielv+++agE+kdPe ++Pkai++v++ri++fYv+s++l++ll+p+n+ +  +      spfv+f++++gv+++++++n
   CTQ28344.1 219 --LLPALVLVQGVVFAFASIELVGTAAGECKDPETMVPKAINSVIWRIGLFYVGSVVLLVLLLPWNAYQAGQ------SPFVTFFSKLGVPYIGSVMN 308
                  ..*******************************************************************999......9******************* PP

  AA_permease 294 aviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfR 391
                  +v+ltaalss+ns+lys+ R+l s+++ g aPk+++k+s+++vP+++il+++ +++++++l++l ++  +vf+++l+++ l +++ w++i ++++r+R
   CTQ28344.1 309 IVVLTAALSSLNSGLYSTGRILRSMSMGGSAPKFMSKMSRHHVPYAGILATLGVYVVGVFLNYLVPS--QVFEIVLNVASLGIIASWGFIVVCQMRLR 404
                  *******************************************************************..***************************** PP

  AA_permease 392 kalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrpql 477
                  ka+k+   ++++++f+++++p++++l+l++l ++l+++a+ ++                +++ +++l+ ++lv++++ v++++ ++
   CTQ28344.1 405 KAIKE--GKAAKVSFRMPGAPFTSWLTLLFLFSVLVLMAFDYPNG-------------TYTIGSIPLLAVLLVAGWFGVRKRVHEI 475
                  **555..5559******************************8888.............7888888888888888888888877665 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0  44.3   6.4e-46   5.7e-42       5     423 ..      34     462 ..      31     465 .. 0.85

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 6.4e-46
  AA_permease_2   5 safalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsv 98 
                    ++ +++ig +ig+g f     ++  +gpal+l++++ ++i+s+  l ++ El  + p+sg  ++y++++ g+k+a++++w++++ ++ +  + +++
     CTQ28344.1  34 QVQMIAIGGAIGTGLFLGAgaRLQMAGPALALVYLV-CGIFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFVNWAMTGIVDITA 128
                    67789************97666666****9998888.455556788899***877*********************************99555555 PP

  AA_permease_2  99 aasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl......stetdt..ffpng 186
                    +a y+ + +g ++   ++++ ++a + l++v ++n +g+k+ a + ++ +++k+l ++++l+ +g i+++ g           + +td+  ffp+g
     CTQ28344.1 129 VALYMHY-WGAFG---DVPQWVFALGALAIVGTMNMIGVKWFAEMEFWFALVKVLAIVAFLV-VGTIFLGSGKPL-DgnatgfHLITDNggFFPHG 218
                    6666665.77653...4577889999****************************75555555.555555333333.33566674444446699999 PP

  AA_permease_2 187 wpgvllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvili 280
                        l+   +v+++f+ +e +   + e  ++++ vpkai++++  ++++y++  ++++  +p++  +  ++   ++  ff ++g +   ++++i++
     CTQ28344.1 219 LLPALVLVQGVVFAFASIELVGTAAGEckDPETMVPKAINSVIWRIGLFYVGSVVLLVLLLPWNAYQAGQS---PFVTFFSKLGVPYIGSVMNIVV 311
                    9999***********************6566689*******************************997443...699******************* PP

  AA_permease_2 281 alsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkr 376
                      ++l ++n+ ++++ r+l++++  g  P+f++k+++++ p+++i  t+ v ++ ++l +l++s  + ++l+v+slg+i s+++++++ + lrk  
     CTQ28344.1 312 LTAALSSLNSGLYSTGRILRSMSMGGSAPKFMSKMSRHHVPYAGILATLGVYVVGVFLNYLVPSQVFEIVLNVASLGIIASWGFIVVCQMRLRKAI 407
                    ****************************************************9*999999**********************************98 PP

  AA_permease_2 377 phlkr.......pgkilvaiigalfllfllvalffp.pkgpatqssliytiiltv 423
                    ++ k        pg++ ++++ +lfl+ +lv+++f  p+g  t  s+ ++ +l+v
     CTQ28344.1 408 KEGKAakvsfrmPGAPFTSWLTLLFLFSVLVLMAFDyPNGTYTIGSIPLLAVLLV 462
                    8775566887777778888888888888888888762455557777777755544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3370.33
//
Query:       CTQ28345.1  [L=73]
Description: Uncharacterized lipoprotein YgdR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-23   80.8   1.5    5.6e-23   80.6   1.5    1.1  1  DUF903    Bacterial protein of unknown function (DUF903)
  ------ inclusion threshold ------
        0.1   13.1   6.0          1   10.0   6.0    2.1  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> DUF903  Bacterial protein of unknown function (DUF903)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   1.5   6.3e-27   5.6e-23       1      49 []      23      71 ..      23      71 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 6.3e-27
                EEEEEETTS-EEEEES--EE-TTTSCEEEEBTTS-EEEEEGGGEEEEEE CS
      DUF903  1 pyvittkDGqtivtdgkPelDkdtGmyeYeDeeGkevqInkddVkqike 49
                +yv+ttk+Gqtivt+gkP+lDk+tGm++Y De+G+++ In +dV+q +e
  CTQ28345.1 23 NYVMTTKSGQTIVTHGKPQLDKETGMTSYIDESGNKREINSSDVSQLVE 71
                7*********************************************987 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.0   0.00012         1       1      18 []       1      21 [.       1      21 [. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00012
      LPAM_1  1 MKKillalga...lllLsGCs 18
                MKK++++++a   l+lL+GCs
  CTQ28345.1  1 MKKPFMVICAgamLALLAGCS 21
                ****888886666999****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 590.47
//
Query:       CTQ28346.1  [L=353]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-11   41.9   0.2      0.013   15.1   0.1    3.1  3  SGL            SMP-30/Gluconolactonase/LRE-like region
    2.7e-06   27.0   0.1          1    9.4   0.1    4.5  4  PQQ            PQQ enzyme repeat
    2.7e-05   23.7   0.2      0.086   12.3   0.0    2.4  2  Glu_cyclase_2  Glutamine cyclotransferase
     0.0001   22.0   1.9    0.00029   20.5   1.2    2.1  1  PQQ_2          PQQ-like domain
    0.00017   20.3   0.1      0.066   11.7   0.0    2.8  3  Cytochrom_D1   Cytochrome D1 heme domain
    0.00048   19.5   0.8          2    7.6   0.0    3.4  4  Lactonase      Lactonase, 7-bladed beta-propeller
     0.0072   16.3   0.6      0.057   13.4   0.2    2.4  2  Phytase-like   Esterase-like activity of phytase
     0.0082   16.6   2.8        8.3    7.0   0.1    4.5  4  PQQ_3          PQQ-like domain
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.27   11.4   0.0    1.6  1  RcsD_ABL       RcsD-ABL domain


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   6.5e-06     0.013      95     173 ..      51     126 ..      45     165 .. 0.86
   2 !   10.9   0.0   0.00012      0.25     115     243 ..     164     289 ..     147     292 .. 0.77
   3 !   13.9   0.0   1.5e-05      0.03     111     150 ..     290     330 ..     283     346 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6.5e-06
         SGL  95 pdGrlwfGtmgdeeakgeevgalyrldpd.gklervlddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnr 173
                 ++++lw+ t + ++ ++   g +yrldp    +++++ +   p G  +++++ tl + +++  +++a+d +  +g ++ r
  CTQ28346.1  51 QENALWVATSQSRSLDKG--GVVYRLDPTtLDVTQIIHNDLKPFGATINHATGTLWFGNTVDSTVTAIDAK--TGAVKGR 126
                 56789********99999..*********999***********************************9984..4545554 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00012
         SGL 115 galyrldpd.gklervlddl.tipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkgegepDGlavDa.eGnvwvAvwgggkvvrf 210
                   ++++d+   kl+ +++++ +++ Gla++p+ k lY+++   +++  +  d+e++++ +r+++ d  k++  +  l +D   ++ +++  ++ +v ++
  CTQ28346.1 164 SVIWVVDGAtLKLKTTITGTgAMATGLAIDPQAKRLYTTNAD-GELLTI--DSESNTIASRKKLQDDGKAHF-YLNLSLDTaGHRAFITDSKQPEVLVV 258
                 5667778877788777777526899************76654.555555..557777888998866666664.44577777477899999999****** PP

         SGL 211 dpd.GklieeiklpakrvtscaFgGpdlrtLyit 243
                 d+  Gk++e+i+ p     ++ F  p++++ y+t
  CTQ28346.1 259 DTRdGKVLEKIAAP--ESLAVLF-NPARNEAYVT 289
                 *999**********..5556677.6999999999 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 1.5e-05
         SGL 111 geevgalyrldpd.gklervlddltipNGlawspdgktlYl 150
                  ++ g++ ++d++  k++++ +  t pN la+s+dgktlY+
  CTQ28346.1 290 HRKAGEVSVIDGKsYKVVKTFKTPTHPNSLALSEDGKTLYV 330
                 344599*******9**************************9 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00051         1       6      23 ..     106     124 ..     101     124 .. 0.86
   2 ?    3.2   0.0     0.046        91       3      30 ..     199     226 ..     197     232 .. 0.85
   3 ?    3.1   0.0     0.052     1e+02       6      24 ..     248     267 ..     244     272 .. 0.78
   4 !    5.4   0.0    0.0093        19       4      36 ..     287     320 ..     285     322 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00051
                 E.ETTSEEEEEETTTCCEE CS
         PQQ   6 g.sadGylyAlDadTGkvl 23 
                 g + d ++ A+Da+TG v+
  CTQ28346.1 106 GnTVDSTVTAIDAKTGAVK 124
                 5578999*********986 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.046
                 EEEEETTSEEEEEETTTCCEEEEEESSS CS
         PQQ   3 vylgsadGylyAlDadTGkvlWrfktgg 30 
                 +y + adG l+ +D +++++  r+k+++
  CTQ28346.1 199 LYTTNADGELLTIDSESNTIASRKKLQD 226
                 677889************9999988876 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.052
                 E.ETTSEEEEEETTTCCEEE CS
         PQQ   6 g.sadGylyAlDadTGkvlW 24 
                 + s+   ++ +D ++Gkvl 
  CTQ28346.1 248 TdSKQPEVLVVDTRDGKVLE 267
                 5556667999********96 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0093
                 EEE.ETTSEEEEEETTTCCEEEEEESSSCGSSES CS
         PQQ   4 ylg.sadGylyAlDadTGkvlWrfktggpvlslp 36 
                 y++  + G +  +D ++ kv+ +fkt+ +++sl 
  CTQ28346.1 287 YVThRKAGEVSVIDGKSYKVVKTFKTPTHPNSLA 320
                 555589999999999999*************987 PP

>> Glu_cyclase_2  Glutamine cyclotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1   0.00037      0.73     180     240 ..     101     159 ..      69     162 .. 0.80
   2 !   12.3   0.0   4.3e-05     0.086     104     209 ..     163     272 ..     160     301 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00037
  Glu_cyclase_2 180 geiyaNvwqtdrilridpatGkvtgvidlsalreeaekaakedVlNGiAydpetdrlfvTG 240
                    g+++     + ++  id++tG+v+g + l++ +++++ +        +A++++t+++++TG
     CTQ28346.1 101 GTLWFGNTVDSTVTAIDAKTGAVKGRLVLDERQRSETVRPL--QPRELAVNEQTNTVYITG 159
                    55555555677899***************998877777653..46679************9 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.3e-05
  Glu_cyclase_2 104 egvafvydaetleeigrvsye...geGWGlttdgkrlvmsdGsstltfldpktfaetksvevtkdgkevsklN.ELeyvkgeiyaNvwqtdrilri 195
                    e+v+ v+d +tl+ +++++ +     G ++  + krl++++   +l  +d ++ +  ++ + ++dgk+  +lN  L+ +  + +    ++ ++l +
     CTQ28346.1 163 ESVIWVVDGATLKLKTTITGTgamATGLAIDPQAKRLYTTNADGELLTIDSESNTIASRKKLQDDGKAHFYLNlSLDTAGHRAFITDSKQPEVLVV 258
                    67788899999999999887432367777788899**************************************77********************* PP

  Glu_cyclase_2 196 dpatGkvtgvidls 209
                    d+++Gkv ++i + 
     CTQ28346.1 259 DTRDGKVLEKIAAP 272
                    *********99864 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   1.2   1.5e-07   0.00029       2     154 ..     110     273 ..     109     331 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.5e-07
       PQQ_2   2 egvvsaldaatGaelWrvdlarplgggvsravlsggtlfvatgggrlvaldaatGkvlWettl.egpvvga............plvaegrvvvvasdgq 87 
                 +++v+a+da+tGa+  r+ l+++ ++++ r++ + + l+v + +++++       +v+W ++  + +++++                 +r++  ++dg+
  CTQ28346.1 110 DSTVTAIDAKTGAVKGRLVLDERQRSETVRPL-QPRELAVNEQTNTVYITGLGKESVIWVVDGaTLKLKTTitgtgamatglaIDPQAKRLYTTNADGE 207
                 799***************88666666666777.777777777777777777777777777764222333334444555566665666777799999999 PP

       PQQ_2  88 lialdaedGkrlWstqqrseepaelrssaspavagdtvvvges.sgklvaldpkdGkvlWerelaapr 154
                 l+++d+e+ + + + +++ + +a++  + s   ag+++++ +s   ++ ++d +dGkvl +  +aap+
  CTQ28346.1 208 LLTIDSESNTIASRKKLQDDGKAHFYLNLSLDTAGHRAFITDSkQPEVLVVDTRDGKVLEK--IAAPE 273
                 9999999999999999999999997777777778888888888688999999999999644..45554 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.24   4.8e+02     306     355 ..      32      86 ..      26     103 .. 0.70
   2 !    5.1   0.0    0.0035         7      15      73 ..     164     222 ..     143     277 .. 0.67
   3 !   11.7   0.0   3.3e-05     0.066       7      54 ..     286     332 ..     280     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.24
                   EE-HHHHHT--EEEEEE-TTSSEEEEEEE--SS.....EEEEEETTTTEEEEEEE CS
  Cytochrom_D1 306 vltlaesaglkvvhvEfnkdGdevwlSvwdgkd.....alvvyDdktlklkkvik 355
                    + l++  g+ + ++ ++++ + +w++  ++        +   D+ tl+  + i+
    CTQ28346.1  32 EEMLRKAVGKGAYEMAYSQQENALWVATSQSRSldkggVVYRLDPTTLDVTQIIH 86 
                   5678888899999999999999999987766555553333344778877777666 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0035
                   TEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEE CS
  Cytochrom_D1  15 gkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaev 73 
                     + ++dg + +   ++ + +a+ ++    ++ + +y+   Dg++  iD   ++i  + 
    CTQ28346.1 164 SVIWVVDGATLKLKTTITGTGAMATGLAIDPQAKRLYTTNADGELLTIDSESNTIASRK 222
                   45678999999999999999999999999999999999999999999998777755443 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 3.3e-05
                   EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEE CS
  Cytochrom_D1   7 fvvverdagkvalldgdskeilavletgyalHisrvfasdgRyvyvig 54 
                     v+ r ag+v ++dg+s++ +++++t      s   ++dg+ +yv  
    CTQ28346.1 286 AYVTHRKAGEVSVIDGKSYKVVKTFKTPTH-PNSLALSEDGKTLYVSV 332
                   679***********************9764.36888999999999965 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.25   4.9e+02     269     314 ..      70     112 ..      27     128 .. 0.50
   2 ?   -0.2   0.0      0.24   4.8e+02     278     309 ..     125     159 ..     115     176 .. 0.68
   3 !    7.3   0.0    0.0013       2.5      23      93 ..     172     236 ..     154     270 .. 0.69
   4 !    7.6   0.0   0.00099         2      25      58 ..     302     335 ..     276     347 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.25
                 EEEEE-TTT--EEEEEEEE-SSS.--EEEE-TTSSEEEEEETTTTE CS
   Lactonase 269 avfavdeadgtltlveevstegkfPRdfaldpsgklllvanqksdn 314
                 +v+++d+   tl  +++++   k P   +++++   l+++n  +++
  CTQ28346.1  70 VVYRLDPT--TLDVTQIIHNDLK-PFGATINHATGTLWFGNTVDST 112
                 33444333..2333333333222.4444555555555555555554 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.24
                 --EEEEEEEE-SSS....--EEEE-TTSSEEEEEE CS
   Lactonase 278 gtltlveevstegkf...PRdfaldpsgklllvan 309
                 g+l l e++ +e+     PR++a++++ + +++ +
  CTQ28346.1 125 GRLVLDERQRSETVRplqPRELAVNEQTNTVYITG 159
                 56666666655554333389999998888888765 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0013
                 TTS-EEEEEE.EEESS---SEEE-TTSSEEEEEET.STTTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE CS
   Lactonase  23 etgkltplel.vaelenPsyLalspdgktlYavnetgeeggvsafaidkdsgeltllnkvssegaspchlsv 93 
                 +t  l+  ++ + ++++++ La++p++k+lY+ n +   g++ + + ++  +++    k +++g++  +l +
  CTQ28346.1 172 AT--LKLKTTiTGTGAMATGLAIDPQAKRLYTTNAD---GELLTIDSES--NTIASRKKLQDDGKAHFYLNL 236
                 33..4444444568999****************996...5555544443..455555566666666666544 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.00099
                 S-EEEEEEEEESS---SEEE-TTSSEEEEEET.S CS
   Lactonase  25 gkltplelvaelenPsyLalspdgktlYavnetg 58 
                 ++ + +++ ++ + P+ Lals+dgktlY++ ++ 
  CTQ28346.1 302 KSYKVVKTFKTPTHPNSLALSEDGKTLYVSVKQA 335
                 4444555666667777777777777777766654 PP

>> Phytase-like  Esterase-like activity of phytase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.17   3.5e+02      76     111 ..      98     134 ..      45     203 .. 0.72
   2 !   13.4   0.2   2.9e-05     0.057      47     153 ..     216     343 ..     181     352 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.17
  Phytase-like  76 apdgtfwvssEggpfilefdad.Gkllrelplpaell 111
                    ++gt+w++   +  +  +da+ G ++++l l ++ +
    CTQ28346.1  98 HATGTLWFGNTVDSTVTAIDAKtGAVKGRLVLDERQR 134
                   5678888888888888888877788888876655543 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.9e-05
  Phytase-like  47 veitevtplkdpdgapfpkkglDpEgiav.apdgtfwvssEggpfilefdad.Gkllrelplpaellpaaspd........................ 117
                    +i+++ +l+d+ +a f    l    + + +++ + ++++  +p +l +d   Gk+l++++ p+ l++  +p+                        
    CTQ28346.1 216 NTIASRKKLQDDGKAHF---YL---NLSLdTAGHRAFITDSKQPEVLVVDTRdGKVLEKIAAPESLAVLFNPArneayvthrkagevsvidgksykv 306
                   45555566666666555...22...23444588899**************666************998888888899******************99 PP

  Phytase-like 118 .aglrrnrGfEglalspdgrkLyaalEspldqdgaka 153
                    +  ++     +lals dg++Ly+ + ++   +++++
    CTQ28346.1 307 vKTFKTPTHPNSLALSEDGKTLYVSVKQASSREKEAT 343
                   98888889999*************9999977766655 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.063   1.3e+02      17      40 .]      46      78 ..      36      78 .. 0.78
   2 !    7.0   0.1    0.0042       8.3      20      40 .]      99     120 ..      89     120 .. 0.87
   3 ?    2.3   0.4      0.13   2.6e+02      14      39 ..     181     214 ..     146     215 .. 0.70
   4 ?   -0.9   0.0       1.3   2.6e+03      15      27 ..     317     331 ..     308     333 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.063
       PQQ_3 17 pavd..gglvyvgtg.......dGtlyAlDaet 40
                +a++  ++ + v+t+        G +y lD++t
  CTQ28346.1 46 MAYSqqENALWVATSqsrsldkGGVVYRLDPTT 78
                56654456788999999999999********98 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0042
       PQQ_3  20 dgglvyvgtg.dGtlyAlDaet 40 
                 + g++ +g + d t++A+Da+t
  CTQ28346.1  99 ATGTLWFGNTvDSTVTAIDAKT 120
                 67999999999*********98 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.13
       PQQ_3  14 nsspavdggl........vyvgtgdGtlyAlDae 39 
                 +++ a++ gl        +y++  dG l  +D e
  CTQ28346.1 181 TGTGAMATGLaidpqakrLYTTNADGELLTIDSE 214
                 3333444444444444449999999999888866 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.3
       PQQ_3  15 sspav..dgglvyvg 27 
                  s+a+  dg ++yv+
  CTQ28346.1 317 NSLALseDGKTLYVS 331
                 456662247799996 PP

>> RcsD_ABL  RcsD-ABL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014      0.27       6      81 ..      69     149 ..      65     159 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
    RcsD_ABL   6 ditvllditseevrkivsrllenyGaelltkdernl.sqeydilltDdpakl..ekstlLlsdde..tgveklkprrlrvN 81 
                 +++ +ld t+ +v +i+++ l+ +Ga++ ++   +  ++  d ++t  +ak+   k  l+l++ +  ++v+ l+pr+l vN
  CTQ28346.1  69 GVVYRLDPTTLDVTQIIHNDLKPFGATINHATGTLWfGNTVDSTVTAIDAKTgaVKGRLVLDERQrsETVRPLQPRELAVN 149
                 78899999********************99987764255577666655544421666666654431156778888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 2643.32
//
Query:       CTQ28347.1  [L=701]
Description: putative iron outer membrane receptor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-56  191.5  31.0    4.9e-56  191.5  31.0    2.0  2  TonB_dep_Rec  TonB dependent receptor
    7.7e-22   77.9   5.5    8.2e-22   77.8   3.2    2.2  2  Plug          TonB-dependent Receptor Plug Domain
      2e-12   46.8   3.5      2e-12   46.8   3.5    2.0  2  OMP_b-brl_3   Outer membrane protein beta-barrel family


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   5.8      0.39   2.3e+03      79     162 ..     142     217 ..      71     242 .. 0.61
   2 !  191.5  31.0   8.3e-60   4.9e-56      30     469 ..     251     696 ..     227     697 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.39
                   EEEEEEEEEEEEEEEEEEEEEEEEEEEECEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEECCBEESCCTC.CSEEEEEE CS
  TonB_dep_Rec  79 glnYsstdgdsdynnsglgggrsynrdndyyglgnvlaaeldlngdlwfG.snladgldyrklsddgydaydplnps.gdasdsvd 162
                   ++ Y++  g   + +s +g+++ ++  ++yyg  +++++ +  +g   +G  + a ++dy+ +++         + + g+++ s  
    CTQ28347.1 142 SALYGNSSGGVINVTSQTGTQPPTVEASSYYGSFGTWHYGMKATGA--VGdGSHAGDVDYTVSTN--------RFTThGYRDHSGA 217
                   5667777788888888888899999999999999999999988777..77544444555553221........1111233333333 PP

  == domain 2  score: 191.5 bits;  conditional E-value: 8.3e-60
                   EEEEEEE..EEEEEEEEEECCCEECCCEEECECCEEEE..EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE.............EEEEEEEECEE CS
  TonB_dep_Rec  30 lgsalsr..gylgtnplyygdnysetdnkrlrlgydyd..lddnlswklslraglnYsstdgdsdynnsglgg.............grsynrdndyy 109
                    g++ +   ++ +++p + ++++++++++++++g++y+  l+ ++++  s+ +   Y+  + ++++ +   +              +r       y+
    CTQ28347.1 251 GGLTADEwrDNPRQSP-RGDQYNTRKNTRQTQAGLRYErqLSAQDDL--SVMM---YAGERETTQFQSIPRAPqlkpshaggvidlTR------HYQ 335
                   2222222313333333.555557777788888888888334555555..6666...77333333333333333455556422222222......445 PP

                   EEEEEEEEEEEE..EEEEEEEEEEEEEEEEEEEEE..EECCBEESCCTC......CSEEEEEEEEEEEE..EEEEEEEEETTEEEEEEEEEEEETTC CS
  TonB_dep_Rec 110 glgnvlaaeldl..ngdlwfGsnladgldyrklsd..dgydaydplnps......gdasdsvdrdsygl..yaqdnikltdrltltlGlRydhysvf 194
                   g +++l+ + +l    +l++G      ldy ++s   +gy ++  +n++      g  +++ ++  + +  y+q +++ltd+l+l++G+Ry  + ++
    CTQ28347.1 336 GIDTRLTHRGELlvPVTLTAG------LDYENMSErrKGYENFVMVNGApqygeqGALRRNERNLMWNVdpYLQTQWQLTDKLSLDAGVRYSSVWFD 426
                   555555555555555555699......****9555567888888888887665443333333333334599*********************99999 PP

                   SSSS.........EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEECCCCCEEEEC.STT---EEEEEEEEEEEEEETTEEEEE CS
  TonB_dep_Rec 195 gkdlrag......afsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggsngaggalsng.npdLkPEtsknyelGlkldddrlnltl 284
                   ++d++ +      + + s+++++P+ +l y +td ++++ s++rgf  P+++el+++      + +++g n  LkP t +++e+G k + +++ +t+
    CTQ28347.1 427 SNDYYITpgngddSGDASYHKWLPAGSLKYALTDAWNVYLSAGRGFETPTINELSYR------SDNQSGlNFGLKPSTNDTVEIGSKTRIGNGLFTA 517
                   9999999999999888899*************************************4......4555545666**************8777777*** PP

                   EEEEEEEEEEEEEESSSSCSTTTCSEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECEC....EEECTTTTSSTTEESEEEEEEEEEE CS
  TonB_dep_Rec 285 ayFridiknfittdpdgpslgglgdfqyqNvgkarikGvElelsyrltpgWglglsgggytYydagdd....sdaddggnplpnvPkhtanlgltYk 377
                   a+F+++++n i+ d+++++      ++y N+gk+r +G El+l+ ++ ++W+l   ++  t++da++     +da+ +gn++p++ ++++ +++ Y 
    CTQ28347.1 518 ALFQTNTDNEIVVDSSSGGR-----TSYKNAGKTRRQGMELGLDQQFGESWRL--KAA-WTWLDATYRtnvcDDASCNGNRIPGIARNMGYASFGY- 605
                   ****************9888.....9********************9999995..666.99*9997777899*******************99999. PP

                   CSEEEEEEEESEEEEEEECCSSEEEEECECCEEEE--EEEEEEEEEEEES...SSEEEEEEEESTTETCSCEEESTT.....TTTCCEB--SEEEEE CS
  TonB_dep_Rec 378 fpaggWgaglllagarYvavggrrygdaantfrrvpgYtlldlslgYklp...knltlslgvnNLfdkryyassgyy.....glggypgpgRtfrlg 466
                   +p  gW ag    + rY   ++   +++ nt  + p++t++ l+ gYk++    ++ l++ ++NLfd++y  s         g ++ p+pgR++ +g
    CTQ28347.1 606 QPEQGWYAGS---DIRYM--SD-IMANDENTA-KAPSWTVVGLTTGYKWSygrMDMDLFGRIDNLFDREYVGSV--IvnesnGRYYEPAPGRNYGIG 693
                   67999**555...77993..66.666677777.**************777766444***********7644443..15594444444466******* PP

                   EEE CS
  TonB_dep_Rec 467 lry 469
                   l++
    CTQ28347.1 694 LNL 696
                   *96 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   3.2   1.4e-25   8.2e-22       2     108 .]      41     152 ..      40     152 .. 0.95
   2 ?   -1.5   0.0      0.61   3.6e+03      58      70 ..     370     382 ..     356     401 .. 0.71

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 1.4e-25
                 HGCCSSEEEEEEHHHHHHT.TTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-G......GCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEE CS
        Plug   2 kkdtpgsvsvvtaediekq.gatsladalqgvpgvnvsssgggggassisiRGlgs......nrvlvlvDGvpianggsgagdlssidpedierievlk 93 
                 + dtp++vsvv+ +++++  +  +l+++l  vpg++v+++++  +  ++siRG+gs      +  +++vDG+p+ ++++g+g++s+id+  ++ ievl+
  CTQ28347.1  41 ELDTPAAVSVVNGDEMRQAaPRVNLSESLGAVPGLQVQNRQNYAQDLQLSIRGFGSrstygvRGLRIYVDGIPA-TMPDGQGQTSNIDIGSVDTIEVLR 138
                 569****************88****************9999999999**************************6.58********************** PP

                 SSCHCTTSSTGSSEE CS
        Plug  94 GpasalyGsdaigGv 108
                 Gp salyG +++gGv
  CTQ28347.1 139 GPFSALYG-NSSGGV 152
                 ********.888887 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.61
                 CSEEEETTEEESC CS
        Plug  58 rvlvlvDGvpian 70 
                  + v+v+G+p+++
  CTQ28347.1 370 ENFVMVNGAPQYG 382
                 56699*****875 PP

>> OMP_b-brl_3  Outer membrane protein beta-barrel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.076   4.5e+02     120     138 ..     270     288 ..     202     309 .. 0.80
   2 !   46.8   3.5   3.3e-16     2e-12     118     301 ..     401     580 ..     352     679 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.076
  OMP_b-brl_3 120 syskklgkfsykaGlRaEy 138
                  +y+ + +  + +aGlR+E 
   CTQ28347.1 270 QYNTRKNTRQTQAGLRYER 288
                  4555555556677777775 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 3.3e-16
  OMP_b-brl_3 118 Yasyskklg.kfsykaGlRaEytnikgess.....ttnesfkknyfnlfPsvslsyklndknklqlslsYyrriinRPsisqLnPfrnysdplnisqG 209
                  Y++ + +l  k+s+ aG+R+ ++ ++ +++     + ++s + +y ++ P  sl y l+d  ++ ls     r  + P+i++L+   ++++ l     
   CTQ28347.1 401 YLQTQWQLTdKLSLDAGVRYSSVWFDSNDYyitpgNGDDSGDASYHKWLPAGSLKYALTDAWNVYLS---AGRGFETPTINELSYRSDNQSGL----- 490
                  9999999988*************9999866555556777889******************9877777...78889*9**99998766666665..... PP

  OMP_b-brl_3 210 NPnLkPeftnsfelgyskk.wkltlslsyrytndniqitvitddnnnvllttyeNlgksqsyglelslslnptkwwslnanlnlyynkskidg 301
                  N  LkP+  + +e+g +++  +  +++ + +tn+ ++i+v + + +   +t+y+N+gk+++ g+el+l +++ + w+l+a  +    ++++++
   CTQ28347.1 491 NFGLKPSTNDTVEIGSKTRiGNGLFTAALFQTNTDNEIVV-DSSSG--GRTSYKNAGKTRRQGMELGLDQQFGESWRLKAAWTWLDATYRTNV 580
                  557***************9445888888888888886665.33333..357899************************998776655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 5050.93
//
Query:       CTQ28348.1  [L=568]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-72  245.2   2.5    2.3e-72  245.0   2.5    1.0  1  Amidohydro_3  Amidohydrolase family
    7.9e-16   58.3   0.2      3e-15   56.4   0.0    1.9  2  Amidohydro_1  Amidohydrolase family
  ------ inclusion threshold ------
       0.11   11.8   0.0       0.21   10.9   0.0    1.3  1  TatD_DNase    TatD related DNase


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.0   2.5   3.9e-76   2.3e-72       1     473 []      54     566 ..      54     566 .. 0.90

  Alignments for each domain:
  == domain 1  score: 245.0 bits;  conditional E-value: 3.9e-76
  Amidohydro_3   1 eviDakGrlvlPGFvDsHtHlagggvnl.rllrlpdarvtslegvltavrdqagttpkgrwivgeGwdeaqf....aeerfpyalaeldevledapv 92 
                   +viD+kG+l lP+  DsH+H +g  ++    l+ +d  v+sl+ + +++rdqa++tp+g wi + G d ++     ae+r   +++++d+v +d+p 
    CTQ28348.1  54 QVIDLKGKLILPAAHDSHIH-IGWLADSwHCLNCQD--VRSLAVLRERLRDQAARTPAGAWIRVCGLDPNAIkecaAEQRSL-TRWDIDDVTADHPT 146
                   7*******************.555567779******..************************999**666642221556655.************** PP

  Amidohydro_3  93 llaaldtHaavrnsaaldlagiteatpdpaggeilrdangegatgllreg.afhlvldlapl.areaeaaavaaalaalasyGitsv.........e 178
                   lla  d+H+ ++ns+al+l g++++tpdp gg + r a ge + g   +  a hl++ ++p  + +a+++ + aa + ++s G+ s+          
    CTQ28348.1 147 LLALWDGHSCIVNSRALALSGLDASTPDPLGGHLGRTASGE-LDGNFIDLpAMHLASGTMPRlTVAALKENLLAAQRLMNSEGYASYtegamgpgeN 242
                   *****************************************.******************666**************************99777766 PP

  Amidohydro_3 179 agggnvsslddleplfeltaeeklplrvi.....ikelldaaerlglpls.......pgseeltigavklfadgvlgsrtalltepyf......... 254
                    +  +  ++ ++++++el++e+kl+ rv+      +  ++++  l + l+        ++++l ++++klf dgv+ s+ta++++ y+         
    CTQ28348.1 243 TREVGAAGDRAIAAYRELQDEGKLTARVSiafysAERGVQSCATLKRDLDsfdfsqfTDRDWLDCRTIKLFCDGVPTSHTAWMNQDYAdrpgyrgrs 339
                   6666778999*******************9998855555555555555557777777778************************************* PP

  Amidohydro_3 255 .....tgwpdfedealaelvaaadergldvaihaigdaavddvldafeaaaekngnqdrr.rlehaegvtesqiervaalqvaagvqpvfnfedell 345
                         ++++   eal +++ +a++rg++va+ha gd+av  +++ f +a ++++ + rr ++ h+++ + ++   +a+ ++  + qp +       
    CTQ28348.1 340 vfggpEATEEAQVEALQQMILLAHQRGFQVAVHAVGDKAVKVTINSFVQAIQRYPGESRRhYVLHGSMGDRQDFVMAAKYGILLSEQPSPGG----- 431
                   *77554444444555******************************************999***************************66655..... PP

  Amidohydro_3 346 dsrlg.perargs.......tpvkellnagvkvalgsDapvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtL 434
                      ++ ++rar           ++ +++ gv va+gsD   + ++    ++aav+rk  + g+v rp+  +s+ + +++yT ++A++ g+e  +G++
    CTQ28348.1 432 -PAYDyEQRARYCgikgeicKGLRDIIDLGVIVAGGSDGIMALVNWRKMVQAAVTRKSSSSGKVIRPELAISVADGVRMYTINAAYQEGKEAVRGSI 527
                   .4455567777777777788***************************************999*********************************** PP

  Amidohydro_3 435 evGadADlvvldadpldvdppelaearvrltvvdGrvvy 473
                   evG+ AD+ vld+d+++v ++e+   rv++t+v+G+vv+
    CTQ28348.1 528 EVGKVADFQVLDRDIFAVAHEEIGASRVVMTMVGGNVVF 566
                   *************************************97 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.13   7.6e+02       2      14 ..      63      75 ..      62     105 .. 0.80
   2 !   56.4   0.0     5e-19     3e-15     124     344 .]     345     565 ..     334     565 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.13
                  EEE-EEEEEEECE CS
  Amidohydro_1  2 vlPGlIDaHvHle 14
                  +lP+  D+H+H+ 
    CTQ28348.1 63 ILPAAHDSHIHIG 75
                  899999*****96 PP

  == domain 2  score: 56.4 bits;  conditional E-value: 5e-19
                   CGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEEETTTTSTCC.....HHTTTHCCEEEHCTCEEE..HH......HHHHHH CS
  Amidohydro_1 124 heapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetiehgthlevaes.....lglldeiklilahgvhlt..pt......eaellk 207
                   ++  +++ e+l++++ +a++r+ +va+Ha ++k+  + +++ f+  i++    ++++       g   +  ++++ g++l+  p+      ++e   
    CTQ28348.1 345 EATEEAQVEALQQMILLAHQRGFQVAVHAVGDKAV-KVTINSFVQAIQRYPGESRRHYvlhgsMGDRQDFVMAAKYGILLSeqPSpggpayDYEQ-- 438
                   4445566789999999*************886666.5999999977777444444444999886777777999********77558886444444.. PP

                   HHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHHHHHHCCTT...TTHCHCHHHHHHHHHTHHHHHHTT-TT CS
  Amidohydro_1 208 erlkeagvahcpfsnsilrsgrealrkaldeGvkvglgtDgaasgnslnlleelrlalklqrgllye...deegglslkealrmaTingAkalgldd 301
                       +a+ +       i ++ +  lr+ +d Gv+v+ g+D    + +l  ++ + +a+ +++++  +   ++e  +s+++ +rm+Tin+A + g + 
    CTQ28348.1 439 ----RARYC------GIKGEICKGLRDIIDLGVIVAGGSD---GIMALVNWRKMVQAAVTRKSSSSGkviRPELAISVADGVRMYTINAAYQEGKEA 522
                   ....44555......4569999999999999*********...4444555599999999999988889***************************** PP

                   TSSSS-TTSB--EEEECCCT.CGGGTTTCTSEEEEEEEETTEEE CS
  Amidohydro_1 302 kvGsievGkdADlvvvdldi.laafvglkkdgnvkkvivkGklv 344
                     GsievGk AD+ v+d di   a +++     v++++v+G++v
    CTQ28348.1 523 VRGSIEVGKVADFQVLDRDIfAVAHEEIGA-SRVVMTMVGGNVV 565
                   ****************99886333333333.359*******997 PP

>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.5e-05      0.21     102     175 ..     344     424 ..     334     427 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.5e-05
                 CCCGHHHHHHHHHHHHHHHHHTTEEEEEEEES......-HHHHHHHHHHCG.GCCS.EEEETT--S-HHHHHHHHHTTEEEE CS
  TatD_DNase 102 eestkeaqeevFeeqlrlAkelklplviHlrk......aeedlleilkeaa.eaka.kvvlHsfsgsaeeakkflklgyyis 175
                  e+t eaq e++++++ lA++ +  + +H++       + + ++++++++  e+     vlH   g+ +   +++k+g+ +s
  CTQ28348.1 344 PEATEEAQVEALQQMILLAHQRGFQVAVHAVGdkavkvTINSFVQAIQRYPgES-RrHYVLHGSMGDRQDFVMAAKYGILLS 424
                 57899**************************98877777779999999998444.459***********9999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3942.29
//
Query:       CTQ28349.1  [L=99]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-29  102.1   0.4      2e-29  101.9   0.4    1.0  1  DUF406    Protein of unknown function (DUF406)


Domain annotation for each model (and alignments):
>> DUF406  Protein of unknown function (DUF406)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.4   1.1e-33     2e-29       3      92 .]       5      96 ..       3      96 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 1.1e-33
                -SS-SSS-----SS-SS--STTEEEEEEE-SSHHHHHHHHHHHHHHHHHH...STT-.EEEE----TT-SEEEEEEE-SSHHHHHHHHHHHH CS
      DUF406  3 kaeeeaagcavdvgtiidnsdcvaeveivaaseaeaeaalakltekAkav..esepveisseieeaedgveLkarfkFscqAEklIFeLklR 92
                 ++++++gca+dvgtiidn+dcv++ e+ ++s++eae+++a++ e+A a+  +sep +++++i++a d+v+L+ ++ FscqAEk+IFeL+lR
  CTQ28349.1  5 VDKCSTKGCAIDVGTIIDNEDCVYRAEKAFPSREEAESTVAAVRERAAAAapASEPPQVDYTIAAAGDAVKLDLSIAFSCQAEKIIFELSLR 96
                689*******************************************9999889**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 819.21
//
Query:       CTQ28350.1  [L=21]
Description: hypothetical protein CH1034_230024 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (21 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       105  (0.00585643); expected 358.6 (0.02)
Passed bias filter:                       73  (0.00407162); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 171.89
//
Query:       CTQ28351.1  [L=311]
Description: ribonucleoside hydrolase 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-90  302.8   0.1    3.7e-90  302.6   0.1    1.0  1  IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase


Domain annotation for each model (and alignments):
>> IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.6   0.1   2.1e-94   3.7e-90       2     305 .]       4     301 ..       3     301 .. 0.93

  Alignments for each domain:
  == domain 1  score: 302.6 bits;  conditional E-value: 2.1e-94
                   EEEEEE--SHHHHHHHHHHHCTHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHHCTTT.S-EEEE-SS-SSSS.S-SHHHHTTTSSTSS-.--SSHC CS
  IU_nuc_hydro   2 kvilDtDpGiDDalAlllalaespeiellgittvaGnvsleqatrnalrvlealggrddipvyaGaekpllre.kaaaeihGedGlgdvllpeperk 97 
                   ++++D+DpG+DDa+Al+lala+ pe+e++++t++aGn++ e++ rn+lr+l +l++r+dipv+ Ga kpl+r+   a+++hGe+Gl++  lpep+ +
    CTQ28351.1   4 PIMIDCDPGHDDAIALVLALAS-PELEVKAVTASAGNQTPEKTLRNVLRML-TLLNRQDIPVAGGAWKPLMRDlIIADNVHGESGLDGPSLPEPAFA 98 
                   699*****************95.****************************.7777999**************777777*******99999***999 PP

                   SCSSHHHHHHHHHHHHCHHTTTTEEEEECS-SHHHHHHHHHTCCHHHHEEEEEEE---SSS--SSSSSS-HHHHHSHHHHHHHHHT.S-E.EEEE-H CS
  IU_nuc_hydro  98 aesesavdalidaveaareypgevtlvatGplTNiAlalrldpelakkvkrlviMGGaftarGNvtpvaEfNifvDPeAAkiVles.apvkitlvpl 193
                   +++  av++++  +   re ++ vtlvatGp TN+Al+l+ +pel +k++r+viMGGa++  GN++p+aEfNi+vDP+AA++V++s  pv  ++++l
    CTQ28351.1  99 PQNCTAVELMASVL---RESQEPVTLVATGPQTNVALLLASHPELHAKIARIVIMGGAMG-LGNWQPAAEFNIYVDPQAAEMVFQSgIPV--VMAGL 189
                   99*9***9998889...666545***********************************99.***********************987776..***** PP

                   HHHTTSCHEECHHHHHHHHCSTCBHHHHHHHHHHHHHHHHHHHHH.SSEEE-HHHHHHHHHH-GGGEEEEEEEEEEESSSSTTTTEEEEETSTT.TT CS
  IU_nuc_hydro 194 dvthkvqalltseeveelaalekglgafladllefyikaykeaeg.sdgaplhDplavavaldpelvttkrlavdveleggltrGrtvvdlrrl.kk 288
                   dvth  +a++ ++++e+ +++++++++++a+ll+f+++++k+++  +dgaplhDp+++a++l+pe++tt +  v ve+eg++t+G+tvvd+ +l ++
    CTQ28351.1 190 DVTH--KAQILPADIERFRQIGNPVSTIVAELLDFFMAYHKDEKWgFDGAPLHDPCTIAWLLKPEIFTTIERWVGVETEGKYTQGMTVVDYYHLtGN 284
                   ****..767889999999999888888*******999966655556***********************999**********************999 PP

                   S--EEEEEEE-HHHHHH CS
  IU_nuc_hydro 289 aknvkvatevdverfle 305
                   ++n++ + +vd+e+f++
    CTQ28351.1 285 RPNTTLMLDVDREAFVD 301
                   ***************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2348.77
//
Query:       CTQ28352.1  [L=345]
Description: putative conserved oxidoreductase, Zn-dependent and NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.8e-45  151.4   0.0    1.4e-44  150.4   0.0    1.5  1  ADH_N_2       N-terminal domain of oxidoreductase
    1.1e-17   64.2   0.0    1.6e-17   63.7   0.0    1.2  1  ADH_zinc_N    Zinc-binding dehydrogenase
    2.3e-12   48.1   0.0    3.6e-12   47.5   0.0    1.3  1  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.4   0.0   2.3e-48   1.4e-44       1     107 [.       9     115 ..       9     116 .. 0.99

  Alignments for each domain:
  == domain 1  score: 150.4 bits;  conditional E-value: 2.3e-48
     ADH_N_2   1 kqwvlkkrpegaptesdfeleeeelpelkdGevlvralylSvDPymRgrmndaksyvepvelgdvmrggavgeVveSknpdfkvGdlVvgllgwqdyav 99 
                 ++wvl++rp+g+pt+++f+lee+e+p++++G+vl+r+ ylS+DPymRgrm+da sy +pv++g vm+gg+v++Vv S+++d+++Gd+V+g++gwqdy +
  CTQ28352.1   9 RRWVLASRPHGEPTAENFRLEESEVPTPGPGQVLLRTVYLSLDPYMRGRMSDAPSYSPPVAIGAVMVGGTVSRVVSSNHADYQPGDWVLGYSGWQDYEL 107
                 89************************************************************************************************* PP

     ADH_N_2 100 sdgkglek 107
                 sdg+gl k
  CTQ28352.1 108 SDGSGLVK 115
                 *****987 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   2.6e-21   1.6e-17       1     120 [.     161     294 ..     161     305 .. 0.88

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 2.6e-21
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC..TSSEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakk.lGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg..gkgee 95 
                 +vG  + q+ k+ G++++++++ +ek+++a + lG d ++++ +a d+ e++++++ ++g+dv++e vG g++++a l ll+   r+ v+G+  g++ +
  CTQ28352.1 161 PVGATVGQIGKIKGCRTVGIAGGAEKCRYAVEtLGFDLCLDH-RAdDFAEQLAQAC-PQGIDVYYENVG-GKVFDAVLPLLNTAARVPVCGLvsGYNAT 256
                 79****************************999*********.777**********.99**********.**********************7655555 PP

                 E.........EEHHHHHHTT-EEEEE-SSC....HHHH CS
  ADH_zinc_N  96 e.........fdlrnlllkeksilGsllgs....lree 120
                           + ++ +l+k+++++G++ g+       e
  CTQ28352.1 257 GlpdgpdrlpLLMATILKKRIRMQGFIIGQdyghRIAE 294
                 588899998888888*************9964443344 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   6.1e-16   3.6e-12       1     133 []     194     339 ..     194     339 .. 0.77

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 6.1e-16
                   TT-SEEEETTSTTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEE.EE----............S-EEE-CHHHCTTT-EEEE--GGG.. CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe...aatggegvDvvldtvggealleaslkvlpggGrl.vsiggpp...........lsaallkpakkrkgrsvkyeflfsmk 82 
                   lG+d ++d+r++df+   a+++++g+Dv +++vgg+ + +a+l +l+  +r+ v  g  +            +  ll+ +   k+r +   f++  +
    CTQ28352.1 194 LGFDLCLDHRADDFAeqlAQACPQGIDVYYENVGGKVF-DAVLPLLNTAARVpV-CGLVSgynatglpdgpDRLPLLMATI-LKKRIRMQGFII-GQ 286
                   89*************9998889****************.*******88799853.33222457788888643333333333.333333333333.34 PP

                   .-...-HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  83 as..aqadileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   ++  + a+  ++++++++eGk++ + +   +l++a++A+  l +g  +GK+V+
    CTQ28352.1 287 DYghRIAEFQQQMGRWVQEGKIKYREQLIDGLDQAPQALIGLLKGENFGKVVI 339
                   44765666569****************99***********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2738.13
//
Query:       CTQ28353.1  [L=193]
Description: putative regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-13   48.6   0.0      9e-13   48.1   0.0    1.3  1  HTH_3     Helix-turn-helix
    2.3e-09   37.1   0.0    4.1e-09   36.3   0.0    1.4  1  HTH_19    Helix-turn-helix domain
    2.3e-09   37.4   0.6      4e-09   36.7   0.6    1.4  1  HTH_31    Helix-turn-helix domain
    7.9e-05   22.3   0.0    0.00014   21.5   0.0    1.5  1  Cupin_2   Cupin domain
    0.00026   20.8   0.2    0.00047   20.0   0.2    1.4  1  HTH_25    Helix-turn-helix domain
    0.00049   20.5   0.0    0.00078   19.8   0.0    1.4  1  HTH_26    Cro/C1-type HTH DNA-binding domain
  ------ inclusion threshold ------
       0.13   12.2   0.4       0.26   11.3   0.0    1.6  2  HTH_37    Helix-turn-helix domain
       0.15   11.9   0.0       0.79    9.6   0.0    2.0  2  TetR_N    Bacterial regulatory proteins, tetR family
       0.16   11.8   0.3       0.55   10.1   0.0    1.9  2  HTH_IclR  IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   4.5e-16     9e-13       1      54 [.      16      69 ..      16      70 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 4.5e-16
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvslde 54
                ++  R+ +g+s+ +LAe++G sr+ i +iE+Ge++P+ ++l +l+ a+g+s++ 
  CTQ28353.1 16 IRIERESRGWSLNDLAERAGASRAMIHKIERGESSPTASMLGRLSGAFGISMST 69
                7889***********************************************975 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.1e-12   4.1e-09       3      61 ..      15      72 ..      14      75 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.1e-12
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyllq 61
                r++  Re +g+++ +laer+g sr++i++iE g++  p+a++l +++ a+gi+   l+ 
  CTQ28353.1 15 RIRIERESRGWSLNDLAERAGASRAMIHKIERGES-SPTASMLGRLSGAFGISMSTLIA 72
                566669****************************9.*****************998875 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.6     2e-12     4e-09       2      57 ..      12      66 ..      11      76 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 2e-12
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                + a+ r  Re +G+s+ ++Aer+g s++ ++++E+G+   p+ + l +l  a+g +
  CTQ28353.1 12 ISARIRIERESRGWSLNDLAERAGASRAMIHKIERGES-SPTASMLGRLSGAFGIS 66
                57899999******************************.6*********9999986 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   7.3e-08   0.00014       4      70 ..     116     184 ..     113     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7.3e-08
                 EEETTEEEEEECSSSEE..EEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2   4 elppGesapshrHpged..effyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllvv 70 
                 elppG + p+   +++   +++   +Ge+++  ++ ++e++aGd++   +    rf+N++ e +++lvv
  CTQ28353.1 116 ELPPGSDVPMPAASYALarQLIWLQQGELVFVEGNTRHEMQAGDCLELGPPNDCRFINESAETCVYLVV 184
                 5677776665544333334999999******************************************98 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   2.3e-07   0.00047       2      36 ..      16      50 ..      15      56 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.3e-07
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT--T CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEeddfd 36
                 r +Re+rg+sl ++a++   + ++++++E+++++
  CTQ28353.1 16 IRIERESRGWSLNDLAERAGASRAMIHKIERGESS 50
                6889***************************9876 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.9e-07   0.00078       7      59 ..      21      72 ..      15      75 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.9e-07
      HTH_26  7 adrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLle 59
                  rg + ++La+++g s+a ++++  g+ ++++++ L ++  a+g++++ L+ 
  CTQ28353.1 21 ESRGWSLNDLAERAGASRAMIHKIERGE-SSPTASMLGRLSGAFGISMSTLIA 72
                6799************************.7*******************9985 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013      0.26      21      55 ..      14      48 ..       4      52 .. 0.88
   2 ?   -3.7   0.1         6   1.2e+04      18      29 ..     131     142 ..     130     143 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                HHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT- CS
      HTH_37 21 laiaeliekrelsqseaaqllgiaqPkvsrllrgk 55
                ++i+  +e+r++s  ++a++ g +++ + +++rg+
  CTQ28353.1 14 ARIRIERESRGWSLNDLAERAGASRAMIHKIERGE 48
                5688899*************************997 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6
                 HHHHHHHHHHHH CS
      HTH_37  18 qlalaiaeliek 29 
                 +la+++++l+++
  CTQ28353.1 131 ALARQLIWLQQG 142
                 589999999886 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0004      0.79      18      34 ..      26      42 ..      15      43 .. 0.87
   2 ?   -0.6   0.0      0.59   1.2e+03      17      33 ..      65      81 ..      56      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0004
                -HHHHHHHHTSSHHHHH CS
      TetR_N 18 tvreIAkrAGvskgalY 34
                +++++A+rAG s++ ++
  CTQ28353.1 26 SLNDLAERAGASRAMIH 42
                89***********9986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.59
                --HHHHHHHHTSSHHHH CS
      TetR_N 17 ttvreIAkrAGvskgal 33
                 +++ + +rA + +g l
  CTQ28353.1 65 ISMSTLIARAEMQEGKL 81
                58999999999998866 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00027      0.55      12      36 ..      18      42 ..      17      44 .. 0.89
   2 ?   -1.5   0.1       1.1   2.2e+03      18      34 ..      53      69 ..      48      71 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00027
                -CTTBSS-BHHHHHHHHTS-HHHHH CS
    HTH_IclR 12 laeapqeltlselArrtglpkStvh 36
                ++++ ++++l +lA+r+g +++  h
  CTQ28353.1 18 IERESRGWSLNDLAERAGASRAMIH 42
                5788999**************9888 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
                S-BHHHHHHHHTS-HHH CS
    HTH_IclR 18 eltlselArrtglpkSt 34
                +  l  l+ ++g++ St
  CTQ28353.1 53 ASMLGRLSGAFGISMST 69
                45688999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1370.18
//
Query:       CTQ28354.1  [L=56]
Description: hypothetical protein CH1034_230028 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 441.80
//
Query:       CTQ28355.1  [L=172]
Description: putative acyltransferase with acyl-CoA N-acyltransferase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-18   67.5   0.0    1.6e-18   67.3   0.0    1.0  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    5.6e-16   58.8   0.1    7.2e-16   58.5   0.1    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.9e-12   48.1   0.1    2.2e-12   47.8   0.1    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    1.5e-09   37.8   0.0    2.1e-09   37.4   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.8e-09   37.9   0.1    2.7e-09   37.3   0.1    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    2.4e-09   37.0   0.0    4.7e-09   36.1   0.0    1.4  1  FR47             FR47-like protein
    1.1e-06   28.4   0.0    1.3e-06   28.1   0.0    1.1  1  GNAT_acetyltran  GNAT acetyltransferase
    0.00032   20.8   0.0    0.00052   20.1   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
     0.0082   16.2   0.1      0.057   13.5   0.1    2.0  2  Acetyltransf_9   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   8.1e-22   1.6e-18       1     153 [.       3     155 ..       3     157 .. 0.93

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 8.1e-22
  Acetyltransf_4   1 iraateeDakeilaiyaeyvvntaitfeyevssveefekflealdsekeyvflvae.sdrivGyaylgqfkkr.akdwkaelsvylaerdnnkeg 93 
                     ir a ++D ++i +iy+  vv ta  ++ +    +    + ea+ ++  ++ lv e ++ i Gy   g  ++  + ++ +e svy+     + +g
      CTQ28355.1   3 IRPAIKDDCAAIAEIYNHAVVHTAAIWNDKTVDTDNRIAWFEAR-QLAGFPVLVSEeDGVITGYSSFGDWRAFdGFRHTVEHSVYVH-PEHQGKG 95 
                     6778899************9999999987777767777788887.999********9***********8888889***********5.88***** PP

  Acetyltransf_4  94 lgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiDm 153
                     lgr+l+ al+  +++ n + ++a i s+n +s  +h+ lGF  +g+  +++ k+grw D 
      CTQ28355.1  96 LGRKLLVALIAEARRLNKHVMVAGIESQNHASLHLHETLGFITTGQMPQVGTKFGRWLDL 155
                     *********************************************************996 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.1   3.6e-19   7.2e-16      12     117 .]      25     136 ..      14     136 .. 0.80

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 3.6e-19
                     THHHHHHHHHHH..HHHHHHSTTC.EEEE..EEETTEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEE CS
  Acetyltransf_1  12 ffppnedaseee..feesfsleae.gllv..aeedgeliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivla 100
                     +   ++d++++   +  +f+     g+ v   eedg + G+ s+         ++++ +s++V+pe++gkGlG++Ll al+ +ar+ + + +v+ 
      CTQ28355.1  25 TAAIWNDKTVDTdnRIAWFEARQLaGFPVlvSEEDGVITGYSSFGDWRAfDGFRHTVEHSVYVHPEHQGKGLGRKLLVALIAEARRLNKHVMVAG 119
                     4456777777777655554444444333345888899*****999999999999*********************************99998999 PP

                     EETTEHHHHHHHHHTTE CS
  Acetyltransf_1 101 veedndaairlYeklGF 117
                     +e+ n+a+ +l+e lGF
      CTQ28355.1 120 IESQNHASLHLHETLGF 136
                     *999********99**9 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.1   1.1e-15   2.2e-12       4     137 ..       3     136 ..       1     137 [. 0.83

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.1e-15
  Acetyltransf_3   4 LrplteeDlealfelrsdpevmrylpepltleeaeewlerawaeeseeegygwaivlkdtgv.iGsvglrdleeedee...aelgymlapsfwgk 94 
                     +rp+ ++D +a++e++++  v+++  ++ +  +++ +++  w e  +  g+  ++  +++gv  G+ ++ d    d++   +e + +++p+++gk
      CTQ28355.1   3 IRPAIKDDCAAIAEIYNHAVVHTAAIWNDKTVDTDNRIA--WFEARQLAGFPVLVS-EEDGViTGYSSFGDWRAFDGFrhtVEHSVYVHPEHQGK 94 
                     89**9************8889987666555555555555..444444577887774.555577999999987777777888************** PP

  Acetyltransf_3  95 GyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     G+++  + al+  a ++l+ + +va i+ +N+aS  ++e lGf
      CTQ28355.1  95 GLGRKLLVALIAEA-RRLNKHVMVAGIESQNHASLHLHETLGF 136
                     **************.9999***********************9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   1.1e-12   2.1e-09      33     112 ..      53     142 ..      29     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1.1e-12
  Acetyltransf_10  33 llvaeeggkivGvielrdgs........hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavgee 112
                      +lv ee+g i G+ +  d +          + ++V+pe++g+G+g++Ll a+++ea++ + ++    +++++ +   + e+lGF ++g++
       CTQ28355.1  53 VLVSEEDGVITGYSSFGDWRafdgfrhtVEHSVYVHPEHQGKGLGRKLLVALIAEARRLNKHVmVAGIESQNhASLHLHETLGFITTGQM 142
                      566666777777776633333555665334568*****************************9*********8889**********9765 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   1.3e-12   2.7e-09       5      75 ..      53     137 ..      40     138 .. 0.68

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.3e-12
                     EEEEEETTEEEEEEEEEEES.......TCTEE..EEE-GGGTTSSHHHHHHHH.........TT...SEEEEEEEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld.......aeitr..laVdpeyrgkGiGraLlea.........ae...kgiileqlelnaekaikfYeklGFe 75 
                     v+V e+dg i G+ ++           +   +  ++V+pe++gkG+Gr+Ll a         ++    gi  e    ++++++++ e lGF+
      CTQ28355.1  53 VLVSEEDGVITGYSSFGDWRafdgfrhTV--EhsVYVHPEHQGKGLGRKLLVAliaearrlnKHvmvAGI--E---SQNHASLHLHETLGFI 137
                     67888888888887766666877765344..146*****************8755443322211222332..2...1222578999999996 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   2.4e-12   4.7e-09      26      79 ..      84     138 ..      78     143 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2.4e-12
                 EEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEE.EEETT-HHHHHHHHHHT-EE CS
        FR47  26 alqvlpehrrrGlgsrlvkalakeiaergktvll.vvvasNtpsirlyeklGfek 79 
                 +++v+peh+++Glg++l  al++e ++ +k+v++  +  +N++s +l e lGf  
  CTQ28355.1  84 SVYVHPEHQGKGLGRKLLVALIAEARRLNKHVMVaGIESQNHASLHLHETLGFIT 138
                 79*************************777776516999**************86 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   6.7e-10   1.3e-06     156     237 ..      49     139 ..      14     143 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 6.7e-10
  GNAT_acetyltran 156 kGlGvvilkngeivsgasSys......vyekgieieidTkedyrrkgLAtivaaalileclkrg...lyPsWDaaneaSvaLaekLGYefe 237
                       G+ v++ +++ ++ g sS+        +++ +e ++  ++++++kgL +++  ali e+ + +   +++    +n aS++L e LG+  +
       CTQ28355.1  49 AGFPVLVSEEDGVITGYSSFGdwrafdGFRHTVEHSVYVHPEHQGKGLGRKLLVALIAEARRLNkhvMVAGIESQNHASLHLHETLGFITT 139
                      477788999999*******99999999999*****************************9765511157778888*************876 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.6e-07   0.00052      28      61 ..      83     116 ..      55     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.6e-07
  Acetyltransf_CG  28 thTeVpeelrGkGiAkkLvkaalddareeglkvv 61 
                      + ++V++e++GkG+++kL  a + +ar+ ++ v 
       CTQ28355.1  83 HSVYVHPEHQGKGLGRKLLVALIAEARRLNKHVM 116
                      3589************************999986 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.29   5.7e+02       3      55 ..       4      50 ..       2      68 .. 0.68
   2 !   13.5   0.1   2.9e-05     0.057      78     107 ..      84     113 ..      79     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.29
                    EEE-GGGHHHHHHHHHHHTT----H..HHHHHHHHHHTTSEEEEEEETTEEEE CS
  Acetyltransf_9  3 relteedldevlellkyaFqdeespleeireyfrklleesrvlgaedngelvg 55
                    r++ ++d  +++e+ + a  ++         + +k+++ ++ + +++  +l+g
      CTQ28355.1  4 RPAIKDDCAAIAEIYNHAVVHTAA------IWNDKTVDTDNRIAWFEARQLAG 50
                    555666666666665555444443......25678888888888888877776 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.9e-05
                     EEEE-CCGTTS-HHHHHHHHHHHHHHHTT- CS
  Acetyltransf_9  78 gVavapehrgrgvlskLlaraleemreegq 107
                     +V v+peh+g+g+ +kLl ++++e+r  ++
      CTQ28355.1  84 SVYVHPEHQGKGLGRKLLVALIAEARRLNK 113
                     699*******************99987544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1273.62
//
Query:       CTQ28356.1  [L=149]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-19   69.8  23.7      3e-19   69.7  23.7    1.0  1  DMT_YdcZ   Putative inner membrane exporter, YdcZ
  ------ inclusion threshold ------
          2    8.6   6.7        1.5    9.1   3.4    2.1  2  DUF872     Eukaryotic protein of unknown function (DUF872)


Domain annotation for each model (and alignments):
>> DMT_YdcZ  Putative inner membrane exporter, YdcZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7  23.7   3.4e-23     3e-19       3     139 .]       7     143 ..       5     143 .. 0.93

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 3.4e-23
    DMT_YdcZ   3 lllallaGallalqaaiNaqLgkklgsplaAalvsflvGlivllllllllrksaalaalk.svpwwallGGllGavfvtlnillvpklGaaltvvlvll 100
                 l++ ++aG+ l +q+++  +++++ ++ l+A+l++ lvG+++++++lll +  a +++l+ sv+ww+l+ GllG +fv+++i  ++++Gaa+t++++++
  CTQ28356.1   7 LACLIAAGVGLVVQNTLMVRITQSASTILIAMLLNSLVGIVIFVTMLLLRQGVAGFQELAlSVKWWTLIPGLLGSFFVFASISGYQNVGAATTIAVLVA 105
                 67889**************************************9999999977555554449************************************* PP

    DMT_YdcZ 101 GqllaslliDhfGlfgvekrplsltrllGlllllaGvvl 139
                 +ql+++l++D +   gv+ r+l +  l+G+++l++G++l
  CTQ28356.1 106 SQLVGGLIMDLVRAHGVPVRAL-IGPLCGAVMLVVGAWL 143
                 *********************9.99***********997 PP

>> DUF872  Eukaryotic protein of unknown function (DUF872)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.4   0.00016       1.5      38     105 ..      26      92 ..      15      96 .. 0.87
   2 ?    0.1   0.0     0.094   8.4e+02      54      68 ..     131     145 ..     117     148 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00016
      DUF872  38 kvkknrkvvlaallLlllGlvLlllgvvilvepseGvssavflvlGlllfiPGvYhvvyiylavrGak 105
                 ++ +   ++l a+lL  l  +++++++++l +  +G ++ +   +   ++iPG+    +++ ++ G++
  CTQ28356.1  26 RITQSASTILIAMLLNSLVGIVIFVTMLLLRQGVAGFQELAL-SVKWWTLIPGLLGSFFVFASISGYQ 92 
                 67788899*******98888889999************9885.566889*************999976 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.094
      DUF872  54 llGlvLlllgvvilv 68 
                 l G+v+l++g+++++
  CTQ28356.1 131 LCGAVMLVVGAWLVA 145
                 678999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1153.31
//
Query:       CTQ28357.1  [L=77]
Description: hypothetical protein CH1034_230031 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-43  146.4   6.0    2.3e-43  146.2   6.0    1.0  1  DUF2526        Protein of unknown function (DUF2526)
  ------ inclusion threshold ------
      0.013   16.0   0.5      0.014   15.9   0.5    1.1  1  Acyl-CoA_ox_N  Acyl-coenzyme A oxidase N-terminal


Domain annotation for each model (and alignments):
>> DUF2526  Protein of unknown function (DUF2526)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.2   6.0   2.6e-47   2.3e-43       1      81 []       1      77 []       1      77 [] 0.99

  Alignments for each domain:
  == domain 1  score: 146.2 bits;  conditional E-value: 2.6e-47
     DUF2526  1 mshledvkvrvdaalaesviahmnellialsddaqlsreeryqqqqrlrtaiahhGrqekedaeaeederreeltkGGkil 81
                m+hl++v+v+vd++lae+viahmnellialsddaqlsreery+qqqrlrtaiahhGrq++e+++a    rre+ltkGG+il
  CTQ28357.1  1 MAHLDEVIVKVDDTLAEGVIAHMNELLIALSDDAQLSREERYIQQQRLRTAIAHHGRQHQEEQDA----RREQLTKGGAIL 77
                9****************************************************************....**********97 PP

>> Acyl-CoA_ox_N  Acyl-coenzyme A oxidase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9   0.5   1.6e-06     0.014      36      74 ..      31      69 ..      21      77 .] 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-06
                   STGGGS-HHHHHHHHHHHHHHHHHHHHHTTSBTTCHHHH CS
  Acyl-CoA_ox_N 36 edyyflsreeryeealrkatrllkklrelqierkeseee 74
                   +d  +lsreery ++ r  t+++++ r++q+e+++  e+
     CTQ28357.1 31 SDDAQLSREERYIQQQRLRTAIAHHGRQHQEEQDARREQ 69
                   56789*************************877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1048  (0.0584528); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 620.58
//
Query:       CTQ28358.1  [L=532]
Description: dipeptide transporter; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-95  318.2   5.6    9.8e-95  317.7   5.6    1.2  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.7   5.6   5.5e-99   9.8e-95       2     376 ..      72     452 ..      71     453 .. 0.94

  Alignments for each domain:
  == domain 1  score: 317.7 bits;  conditional E-value: 5.5e-99
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSS......B-SHHHHHHHHHHHHTGGGHCTTHHHHHC........TCTEEEEEEEETTEEEEEESSET CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGt......pltAeDvvfsferlldpdtasgyasllee........dqdikkveavddytvrftlkkpn 86 
                 ++p LA++ w vs+Dgkt+tf+LR+gvkF   +      +++A+Dv fs  r +dp +++   s  ++        d+ ik+v++vddy+v+f+l++pn
  CTQ28358.1  72 PIPSLATE-WHVSEDGKTWTFTLRQGVKFNSNKffkptrDFNADDVLFSVLRQMDPQHPYHKVSQGNYeyfhdvglDKLIKSVKKVDDYHVQFELNEPN 169
                 79******.7**************************************************9999999999****************************9 PP

                 T.........TTTTHCHHHHHHHGCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSS CS
   SBP_bac_5  87 a.........lfltllaavpasiakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeid 176
                 a          +++l a++  ++       ++ + ++ ++ pvgtGPY l+++k +++i++ +np+Yw  g++  ++++f++ p+ ++r+a+lq++e++
  CTQ28358.1 170 AafladwgmdFASILSAEYGEAML------KKGTPENVDNWPVGTGPYALQQYKVDSQIRYIANPHYW-EGEVPTKHLIFSITPNVETRLAKLQTNECQ 261
                 966666665334444455555555......88899*********************************.****************************** PP

                 EEESTTCCTHCHHHHHTTEEEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHH CS
   SBP_bac_5 177 dvaepppsdieqlkeakglkvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekA 275
                 ++  p+p + + +k +k+l + +    ++v+ylafNt+k+pfd++ vRqAl+yA D+++ivkav+   + +a+s++p+++ g++++ +++  +ydp+kA
  CTQ28358.1 262 IIPAPSPVQFPVIKGNKDLAL-HAVEALNVGYLAFNTEKKPFDNVLVRQALNYATDKQAIVKAVFLDSGSVAKSPIPSTMLGYKKDLPDY--DYDPQKA 357
                 *********************.****************************************************************9997..78***** PP

                 HHHHHHTT-BCSSTSCEETCEEEEEEEEETTSHHHH.HHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTT CS
   SBP_bac_5 276 kklLkeaGykdgdggglrekklkltlllasgspaek.aiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsss 373
                 k+lLk+aG+++g +  l      + + ++  +++++ +iae+iq++++k+G+k+++ +++w  +yl+ +++g++d +l gw++d++dpdnf  ++ls+ 
  CTQ28358.1 358 KALLKQAGLEQGAEVTL------WSMPVQRPYNPNSkRIAEMIQNDWAKVGVKAKIVSYEW-GEYLAGMRKGEHDSALYGWMSDNGDPDNFAGTLLSCD 449
                 ************99765......99999888777777************************.************************************9 PP

                 CTT CS
   SBP_bac_5 374 gag 376
                 +++
  CTQ28358.1 450 NIQ 452
                 876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3641.44
//
Query:       CTQ28359.1  [L=477]
Description: Vanillin dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-136  455.5   0.3   1.9e-136  455.3   0.3    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  455.3   0.3    1e-140  1.9e-136       1     462 []      13     466 ..      13     466 .. 0.97

  Alignments for each domain:
  == domain 1  score: 455.3 bits;  conditional E-value: 1e-140
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlr 98 
                 w+++e+ +t+   +Pa++e    ++aa+ +d +++v+aA+ af+ w+++ ++eR+++L +aa+ +  r+ ++++++++etG + + a  +v+ a+d+lr
  CTQ28359.1  13 WHDAEGrRTFTRRHPAHDEAASVAAAASLADGKRCVEAAACAFPLWRDTAPAERRRLLLEAAEQMLLREAKFIAAMAAETGATAHWAGFNVHLAADILR 111
                 889999566****************************************************************************************** PP

                 HHHHHHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE-...-SST CS
      Aldedh  99 yyaelaeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvv...tgsg 193
                  +a+l +++eg+++ps  +g+la+ +r+  Gvv+  +PWN Pl+la+++la  la+GNtv+lK ae +p++  l++ ++++ag+P+gv+n++   + + 
  CTQ28359.1 112 EAAALTTQIEGQIIPSnVPGNLAMGVRQGAGVVLGMAPWNAPLILATRALATPLACGNTVILKGAELSPATQGLIIDALDAAGFPPGVVNYLtcaPEDA 210
                 ****************55**************************************************************************4444456 PP

                 CCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHH CS
      Aldedh 194 sevgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklvea 292
                   + e l++hp v+ v+ftGst+vgr ia+++++ lk+ +lElGGk+pl+vl+daD+++a++++v+gaf naGQ+C++++r++v + ++++f+  l+ +
  CTQ28359.1 211 PALVESLIAHPAVRRVNFTGSTPVGRIIARTCGQYLKPAVLELGGKAPLLVLDDADIEQAAAGAVFGAFANAGQICMSTERIIVDNAVAEAFIPLLARR 309
                 678999********************************************************************************************* PP

                 HHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHH CS
      Aldedh 293 akklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaN 391
                 a++l       ++   GP+++ +  +++++++++a ++ga+ll+Gg      ++++  ++Pt+l++vt++mr+++eE FGPV ++i++++eeea+++aN
  CTQ28359.1 310 AAAL-------PAALTGPVVDMNTIARCNALIDDALAKGARLLTGG------RANDTHMSPTLLDGVTREMRLWREESFGPVKAIIRVHSEEEALAVAN 395
                 *999.......45678******************************......6899******************************************* PP

                 SSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 392 dteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 d+eyGL+a+v+++d +ra +va+rl++G ++iN +t++++ ++pfgG+k+Sg+Gr+gg++g+ e+te++++
  CTQ28359.1 396 DSEYGLSAAVYSRDSARAWNVAQRLHTGICHINGPTVHDEAQMPFGGCKASGYGRFGGRAGIAEFTELRWI 466
                 ****************************************99*************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3408.64
//
Query:       CTQ28360.1  [L=249]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-18   66.6   2.1    5.6e-18   66.4   2.1    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    5.5e-16   59.0   0.0    9.1e-16   58.3   0.0    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
    3.1e-08   33.2   0.0    4.8e-08   32.6   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
    0.00018   21.7   0.1    0.00022   21.4   0.1    1.3  1  Thioesterase   Thioesterase domain
     0.0028   17.4   0.0       0.45   10.2   0.0    2.2  2  PGAP1          PGAP1-like protein
  ------ inclusion threshold ------
      0.049   13.5   0.2      0.074   12.9   0.2    1.2  1  Lipase_3       Lipase (class 3)
      0.053   13.7   0.0      0.095   12.8   0.0    1.3  1  Kazal_2        Kazal-type serine protease inhibitor domain
      0.077   12.8   0.0        0.1   12.4   0.0    1.3  1  Abhydrolase_3  alpha/beta hydrolase fold
        0.1   11.9   0.1       0.33   10.3   0.0    1.7  2  DUF915         Alpha/beta hydrolase of unknown function (DUF9


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   2.1   2.8e-21   5.6e-18       1     219 [.      25     243 ..      25     244 .. 0.64

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 2.8e-21
                    EEEE--GC.....GCHHHH..HHHHCCTCEEEEE--TTST.S-GGCS--HHH...CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC...E CS
  Abhydrolase_6   1 vlllHGagssassWlvapL..aallaagvhvlapDlpGhG.rsdpppldled...ladlaalldelaagggpvvlvGHSlGGalalaaapla.lvv 89 
                    v+++HG+g+  ss+ ++++   ++l+++ + + +DlpG+G ++ p++++++    ++ l+++l +l+    ++ l+GHS+GG++a +aa l+  +v
     CTQ28360.1  25 VVFIHGLGCA-SSYDYPRIasDPALRER-RKILIDLPGFGySDKPRAFSYNIhgqALVLEQFLSHLR--LQRFALFGHSMGGSIAIEAAGLLgERV 116
                    8*****8854.44445699887777777.5557*******766667788866443444488888886..8889**************777779555 PP

                    E..EEES-..----TTTS----TTHHHHHHTT-CCCCHCCH.S-HS.CCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGC.....EEE CS
  Abhydrolase_6  90 g..vlldppptalpagllaaalelllallallrllawlsre.plpr.lfladedadaawrarlarlaallaglgllpaaawadlpvpl.....lvl 176
                    +  ++ +p    l ag +   ++++++  ++++++++ ++     r ++ +++   a+w+++ a+ +         + ++w++ +++l     l++
     CTQ28360.1 117 TtlLVSEP---NLFAGGGEYSRRIAAQSESAFVADGYARLLaEE-RsPWAGCLQNSAPWAVWRAASSLICG-----SDTPWFTQLCQLrcqkmLIV 203
                    53344444...777777888888888888888887777321111.12444444434445555444443333.....34488888888888886665 PP

                    CTT-CHHHHCHHCCCH.STTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 177 ggeDplvprllerlla.qagarlpvvlpgaGHlphleepdevae 219
                    g++    p +++  l+ ++g  +  ++p+aGH++  e+p+ +a+
     CTQ28360.1 204 GERSL--P-YADSDLVqAQGIPV-GIVPHAGHSMAWENPQGLAQ 243
                    64444..3.22222223466666.7899****66666**99997 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   4.6e-19   9.1e-16       2     122 ..      24     139 ..      24     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 4.6e-19
                    EEEEE-STTT.CGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   2 vlvilhGlpg.ssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    ++v++hGl+  ss+ + +  +a++ a ++ + il+Dl+G+gyS+++ a     y++   a +l+++l +l +++++l GhSmGG ia ++a +  e
     CTQ28360.1  24 PVVFIHGLGCaSSYDYPR--IASDPALRERRKILIDLPGFGYSDKPRA---FSYNIHGQALVLEQFLSHLRLQRFALFGHSMGGSIAIEAAGLLGE 114
                    79*****98758888888..99999999********************...9******************************************** PP

                    GEEEEEEESECSSCCHHHHHHHHHHH CS
  Abhydrolase_1  97 rVkalvllgaidpaaslieaqrqqak 122
                    rV  l   ++ + +a  +e  r++a+
     CTQ28360.1 115 RVTTLLVSEP-NLFAGGGEYSRRIAA 139
                    **98877777.666666666666555 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   2.4e-11   4.8e-08       7     111 ..      25     126 ..      23     158 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 2.4e-11
  Hydrolase_4   7 vvlvHGla.ehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvag 103
                  vv++HGl+  +s  y ++a + a ++   + +D  G+G s+  r+   +++     l++f+++++     +++ l+GhSmGG ia++++    ++v+ 
   CTQ28360.1  25 VVFIHGLGcASSYDYPRIASDPALRERRKILIDLPGFGYSDKPRAFSYNIHGQALVLEQFLSHLR----LQRFALFGHSMGGSIAIEAAGLLGERVTT 118
                  89****96267779*******************************88888877777888887777....66799***************888887999 PP

  Hydrolase_4 104 lilsaPal 111
                  l +s P+l
   CTQ28360.1 119 LLVSEPNL 126
                  99888876 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   1.1e-07   0.00022      57      90 ..      82     115 ..      27     144 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.1e-07
                   HHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHC CS
  Thioesterase  57 ealrqiqpegPyalfGhSlGgllAfevArqLesq 90 
                   e+ +++     +alfGhS+Gg +A e+A  L ++
    CTQ28360.1  82 EQFLSHLRLQRFALFGHSMGGSIAIEAAGLLGER 115
                   455555555569****************999776 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0083        17       3      23 ..      21      42 ..      19      57 .. 0.73
   2 !   10.2   0.0   0.00022      0.45      91     123 ..      91     120 ..      71     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0083
       PGAP1  3 sGipVlFvpGna.gsykqvrsl 23
                +G pV+F++G++  s  +   +
  CTQ28360.1 21 DGLPVVFIHGLGcASSYDYPRI 42
                799*******851444455555 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00022
       PGAP1  91 tsviliGHSmGGivaraaltlknyikqsvntil 123
                 ++  l GHSmGG +a   +  + +  + v+t+l
  CTQ28360.1  91 QRFALFGHSMGGSIA---IEAAGLLGERVTTLL 120
                 667899********9...555555566666666 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   3.7e-05     0.074      56      90 ..      82     116 ..      71     131 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.7e-05
                 HHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT CS
    Lipase_3  56 krllekypeysivvtGHSLGgalAlLaaldlveng 90 
                 ++ l+  +  ++++ GHS+Gg++A+ aa  l e+ 
  CTQ28360.1  82 EQFLSHLRLQRFALFGHSMGGSIAIEAAGLLGERV 116
                 5555666667899***********98887776665 PP

>> Kazal_2  Kazal-type serine protease inhibitor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.8e-05     0.095      14      32 ..     181     199 ..     175     203 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.8e-05
                 EEETTTEEESSHHHHHHHC CS
     Kazal_2  14 VCGsDgktYtseCkLqaag 32 
                 +CGsD+  +t +C+L++++
  CTQ28360.1 181 ICGSDTPWFTQLCQLRCQK 199
                 9************999876 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.1e-05       0.1      65     108 ..      85     124 ..      67     214 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.1e-05
                    HHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE CS
  Abhydrolase_3  65 elgadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyP 108
                      ++  +r +l+G S GG +a  +a  + ++    v+++++  P
     CTQ28360.1  85 LSHLRLQRFALFGHSMGGSIAIEAAGLLGER----VTTLLVSEP 124
                    4578899******************999998....444444445 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.73   1.4e+03      12      22 ..      23      33 ..      20      37 .. 0.81
   2 ?   10.3   0.0   0.00016      0.33      92     117 ..      80     105 ..      64     108 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.73
      DUF915 12 iPtifihGygg 22
                 P++fihG g 
  CTQ28360.1 23 LPVVFIHGLGC 33
                69******875 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00016
      DUF915  92 vlseLkkkYnikkfnavGhSmGglal 117
                 vl++  ++  +++f + GhSmGg+ +
  CTQ28360.1  80 VLEQFLSHLRLQRFALFGHSMGGSIA 105
                 899999999**************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1957.70
//
Query:       CTQ28361.1  [L=57]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-25   88.6   6.8    2.6e-25   88.4   6.8    1.0  1  Toxin_GhoT_OrtT  Toxin GhoT_OrtT
  ------ inclusion threshold ------
      0.014   15.3   1.5      0.017   15.0   1.5    1.2  1  DUF5325          Family of unknown function (DUF5325)
      0.021   13.7   4.3      0.021   13.7   4.3    1.0  1  PelG             Putative exopolysaccharide Exporter (EPS-E)


Domain annotation for each model (and alignments):
>> Toxin_GhoT_OrtT  Toxin GhoT_OrtT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   6.8   4.3e-29   2.6e-25       1      55 []       4      57 .]       4      57 .] 0.99

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 4.3e-29
  Toxin_GhoT_OrtT  1 welilviYaiglvisvlitfflskdpslkirLLsalliglTWPlSfPvvllfslf 55
                     ++++lv+Yai+ vi+++i++fl+k+ s +irLL+allig+TWP+SfP++ll+slf
       CTQ28361.1  4 YQKMLVFYAIMGVICAVISWFLTKE-SRMIRLLAALLIGATWPFSFPMALLVSLF 57
                     89***********************.****************************9 PP

>> DUF5325  Family of unknown function (DUF5325)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   1.5   2.8e-06     0.017       1      41 [.       1      40 [.       1      49 [. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.8e-06
     DUF5325  1 MkkikwifllyAilAvaslmgiGiaigersilgiiiaival 41
                M+ +++++++yAi++v++   i+ ++ ++s ++ ++a +++
  CTQ28361.1  1 MTLYQKMLVFYAIMGVICA-VISWFLTKESRMIRLLAALLI 40
                8899**************5.688888888887777766555 PP

>> PelG  Putative exopolysaccharide Exporter (EPS-E)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   4.3   3.6e-06     0.021     158     213 ..       3      57 .]       1      57 [] 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.6e-06
        PelG 158 dykaiilsFligylvsvllalllrkllegleglllgfalGllvllvlllvlilreF 213
                  y++++++++i++++  +++++l+k  + ++ ll+++++G +  + + ++l+++ F
  CTQ28361.1   3 LYQKMLVFYAIMGVICAVISWFLTKE-SRMIRLLAALLIGATWPFSFPMALLVSLF 57 
                 59***********************9.9*************999999999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 438.68
//
Query:       CTQ28362.1  [L=83]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 676.72
//
Query:       CTQ28363.1  [L=65]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.046   13.6   0.0      0.078   12.8   0.0    1.5  1  PsbN      Photosystem II reaction centre N protein (psbN)


Domain annotation for each model (and alignments):
>> PsbN  Photosystem II reaction centre N protein (psbN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.4e-06     0.078       9      28 ..       5      24 ..       1      31 [. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.4e-06
        PsbN  9 isiaavlvaiTgfsiYtaFG 28
                ++ia+ l+ +T+ +iY a G
  CTQ28363.1  5 LAIAIYLLTMTARAIYCACG 24
                6899**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      174  (0.00970495); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 545.22
//
Query:       CTQ28364.1  [L=481]
Description: medium chain aldehyde dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.7e-164  546.0   0.2   6.4e-164  545.8   0.2    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
       0.18   10.8   0.0       0.29   10.1   0.0    1.5  1  LuxC      Acyl-CoA reductase (LuxC)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  545.8   0.2  7.1e-168  6.4e-164       3     462 .]      19     476 ..      17     476 .. 0.98

  Alignments for each domain:
  == domain 1  score: 545.8 bits;  conditional E-value: 7.1e-168
                 T-SSSEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHH CS
      Aldedh   3 esesetievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryy 100
                 ++e+e+++v+nPatgevi ++++ata++vdaav+aA +af+aw+++++++Rae+L k+ad++ +++e la+le+l++Gkpl+   + e++ ++dv+r++
  CTQ28364.1  19 AGEGEKVPVYNPATGEVILEIAEATAAQVDAAVEAADRAFDAWSQTTPKTRAECLLKLADAISAQAETLAQLESLNCGKPLHCVINdEMPAIADVFRFF 117
                 567789*****************************************************************************9999************ PP

                 HHHHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHH CS
      Aldedh 101 aelaeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevge 198
                 a++a+ l g ++    eg+++++rr+P+Gvv++I+PWN+Pl++aawklapalaaGN+vv+KP+e tpl+al+lael+++  +P+gv+nv+ g+g++vg+
  CTQ28364.1 118 AGAARCLPGMAAGEyLEGHTSMIRRDPVGVVASIAPWNYPLMMAAWKLAPALAAGNCVVIKPSEITPLTALKLAELAKD-IFPEGVINVLFGRGKTVGD 215
                 *********66555469**************************************************************.8****************** PP

                 HHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT-- CS
      Aldedh 199 alvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklk 297
                  l++h +v++vs+tGs ++g +i  + a+++kr+++ElGGk+p+iv++daD+d++v+++ +  f+naGQ C+aa r++ q++iyd++vekl +a+++lk
  CTQ28364.1 216 PLTAHVKVRMVSLTGSIATGAHIIGHTASSIKRTHMELGGKAPVIVFDDADIDAVVDGVRTFGFYNAGQDCTAACRIYAQQGIYDQLVEKLGAAVASLK 314
                 **************************999********************************************************************** PP

                 BS-TTSTT-SB---SSHHHHHHHHHHHHHHHH.TTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSE CS
      Aldedh 298 vgdpldedtdvGPliseaqlekvekyveeake.egaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdtey 395
                 +g p+d +t++GPl s a+le+v + ve a++  ++k+++Gg   ++ +  gy+++Pt+la+ +++++i+q E+FGPV+sv++f+de++a+++aNd++y
  CTQ28364.1 315 MGAPEDAATELGPLSSLAHLERVSAAVEAARAlPHIKVVTGG---SRADGAGYYFQPTLLAGARQEDAIVQREVFGPVVSVTPFSDEAQALSWANDSQY 410
                 ******************************994589******...7899************************************************** PP

                 ESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 396 GLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 GLa++v+tkd+ ra+r+++rl++G  ++N++     e+ p+gG k Sg+G++++ +gle+yt v++v
  CTQ28364.1 411 GLASSVWTKDVGRAHRLSARLQYGCTWVNTHFMLVSEM-PHGGQKLSGYGKDMSMYGLEDYTVVRHV 476
                 *******************************9999999.***********************99987 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   3.3e-05      0.29      78     144 ..     134     200 ..      42     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.3e-05
        LuxC  78 ktkeksyekaqprglvlhvlsgNvpll.pvmsilqglLvknvnllkvSssdpflaaallksladvden 144
                 + ++ s +++ p g+v  + + N pl+ + + ++ +l ++n+ ++k+S   p +a +l+   +d+ ++
  CTQ28364.1 134 EGHT-SMIRRDPVGVVASIAPWNYPLMmAAWKLAPALAAGNCVVIKPSEITPLTALKLAELAKDIFPE 200
                 4455.88999***************86378*************************9999888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3574.69
//
Query:       CTQ28365.1  [L=268]
Description: putative spermidine/putrescine transporter subunit; permease component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-10   40.3  16.4    2.6e-10   40.3  16.4    1.6  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.17   3.1e+03      42      42 ..      32      32 ..      12      78 .. 0.55
   2 !   40.3  16.4   1.5e-14   2.6e-10       2     165 ..      80     247 ..      79     257 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.17
  BPD_transp_1 42 v 42
                  +
    CTQ28365.1 32 A 32
                  2 PP

  == domain 2  score: 40.3 bits;  conditional E-value: 1.5e-14
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilg.hlilp.viillllsaapyvrlirraalrslpk...dlveaaral 90 
                   ++lG laa    ++ ++++++++ l  ++ +lP ++ ++ l+      ++++  +  p ++++++ +a++ v++++++++    +   + vea+  l
    CTQ28365.1  80 LVLGTLAAgalWRSAFFGKNAVSLLLLLPIALPGIITGLALL------TAFKaVGLEPgLLTIVVGHATFCVVVVFNNVIARFRRtswSMVEASMDL 170
                   789999999988888999************************......777766666768999999999999999999998776655589******* PP

  BPD_transp_1  91 GasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG.lgtlll.eailgydyseisnggvlalviav 165
                   Ga+ wq+fr+vvlPn+ + +++g +laf++++ + +++ f+++    l ++ll +    +d++ ++++++l++++ +
    CTQ28365.1 171 GATGWQTFRYVVLPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERtLPLWLLnQLGRPRDVPVTNVVALLVMLVTT 247
                   ******************************************54434333222133344566655533333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2194.09
//
Query:       CTQ28366.1  [L=309]
Description: putative spermidine/putrescine transporter subunit; permease of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-16   58.5  18.9    7.2e-16   58.5  18.9    2.3  3  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.011   15.3   2.0      0.011   15.3   2.0    1.9  2  DUF1182       Protein of unknown function (DUF1182)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   3.0       0.3   2.7e+03      32      64 ..      22      51 ..       8      70 .. 0.57
   2 ?   -4.3   5.5       1.5   1.3e+04      58     146 ..      45      53 ..      21     102 .. 0.42
   3 !   58.5  18.9     8e-20   7.2e-16       2     179 ..     102     303 ..     101     306 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.3
  BPD_transp_1 32 sfvlaillvlvfvilsilghlilpviillllsa 64
                  ++ l++ll+     l ++g   l+ +++ll+++
    CTQ28366.1 22 VLGLFLLLL---GPLMWFGIVYLGSLLTLLWQS 51
                  333444444...334445544455444444444 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 1.5
  BPD_transp_1  58 illllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleail 146
                   +                                                                                tll+++i 
    CTQ28366.1  45 L--------------------------------------------------------------------------------TLLWQSIY 53 
                   2................................................................................22222222 PP

  == domain 3  score: 58.5 bits;  conditional E-value: 8e-20
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvf...........................vilsilghlilpviillllsaapyvrli 71 
                   +++++++a++ ++k + ++++ + ++++  ++v a  +vl++                           v  + l ++ l+ ++++++ ++p+++l 
    CTQ28366.1 102 LPMAWYMARYTSGKMKAFFYIAVMLPMWASYIVKAYAWVLLLakdgvaqwflghlglegalnallsvpaVGGNTLSTSGLGRFLVFVYIWLPFMILP 198
                   799******************************777777777778999999****************998888888999999*************** PP

  BPD_transp_1  72 rraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlll 168
                   ++aal+ +p +l +a+  lGa ++q+fr+vvlP+a+p i++g i++f + lg+++++ ++g   + g+++ +   +++ + +++ +++a++++ ++l
    CTQ28366.1 199 VQAALERIPGSLLQASADLGAAPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVG---PPGYFIGNMVYSQQGAIGNMPMAAAFTLVPIVL 292
                   *************************************************************...469999999999999999999999999999999 PP

  BPD_transp_1 169 nlvadilqrll 179
                   ++++ ++++ l
    CTQ28366.1 293 IALYLAFVKRL 303
                   99999888776 PP

>> DUF1182  Protein of unknown function (DUF1182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.24   2.2e+03      66      96 ..      23      55 ..      20      72 .. 0.70
   2 ?   15.3   2.0   1.3e-06     0.011      81     154 ..      66     136 ..      57     143 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.24
     DUF1182 66 lgsfllsl.plillq.aylvvflqalvepvytv 96
                lg fll l pl+ +  +yl   l  l +  yt 
  CTQ28366.1 23 LGLFLLLLgPLMWFGiVYLGSLLTLLWQSIYTF 55
                778877765788775257777777778888875 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.3e-06
     DUF1182  81 ylvvflqalvep.vytvavcsllknitssttsaaqvlplavalyryrivvlkkkmsswfvvvvhiivstifivia 154
                 + + +l+al +p  y ++v +l+ +++ + +sa   lp+a  + ry      +km ++f ++v   +   +iv a
  CTQ28366.1  66 FTLANLRALFNPaNYDIIVRTLVMALCVTLASALLALPMAWYMARYT----SGKMKAFFYIAVMLPMWASYIVKA 136
                 5678999**99945***************************999996....689999999999877666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2393.45
//
Query:       CTQ28367.1  [L=337]
Description: putative spermidine/putrescine transporter subunit; ATP-binding component of ABC superfamily tranporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-33  115.3   0.0    4.9e-33  114.5   0.0    1.4  1  ABC_tran  ABC transporter
    1.2e-14   54.2   0.5    3.1e-14   52.9   0.5    1.7  1  TOBE_2    TOBE domain
    9.7e-06   25.6   0.3       0.01   15.7   0.1    2.1  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
     0.0052   16.2   0.8      0.091   12.2   0.1    2.2  2  SMC_N     RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.028   13.9   0.1        5.4    6.4   0.0    2.2  2  PhoH      PhoH-like protein
      0.028   14.7   0.7       0.16   12.2   0.7    2.1  1  AAA_22    AAA domain
       0.06   13.7   1.0       0.22   11.9   1.0    2.2  1  AAA_16    AAA ATPase domain
      0.089   12.5   0.1       0.22   11.3   0.1    1.6  1  AAA_29    P-loop containing region of AAA domain
       0.14   12.6   0.5        1.4    9.4   0.5    2.3  1  AAA       ATPase family associated with various cellular acti


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   0.0   2.5e-36   4.9e-33       2     136 ..      21     162 ..      20     163 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.5 bits;  conditional E-value: 2.5e-36
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 + vs+ ++ ge   ++G++G+GK+t l+l+ag ++   G+i++ g++ +e  l+ +++ + +++q+  lfp++++ +n             ++ +++++
  CTQ28367.1  21 DGVSIGIRDGEFFSMLGPSGSGKTTCLRLIAGFEQLSGGTIHIFGQPASE--LPPWQRDVNTVFQDYALFPHMSILDNvayglmvkgmakkARHARAQE 117
                 789**********************************************9..************************************88777888*** PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 al+k+ l   ++++     s+LSgGq+qrva+aral+++p++lllDEp 
  CTQ28367.1 118 ALEKVALGFAHHRKP----SQLSGGQRQRVAIARALVNQPRVLLLDEPL 162
                 *********988888....*****************************6 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.5   1.5e-17   3.1e-14       2      73 ..     257     330 ..     256     333 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 1.5e-17
      TOBE_2   2 aiRPEklrlaaaggan.glsGtVedveylGsstryvvelaggqlvvvrqpnadr.d..salapGdtVelswdpdda 73 
                 ++RPE++rl  +gg++ +++G+V+ v+y+G+ tr+ ++la+g +++v+q+n d+ +  s ++ G+ V+ sw+  ++
  CTQ28367.1 257 SLRPEHVRL--QGGGEvQVQGVVQAVQYQGAATRIELRLADGDKLLVSQANIDGaAaaSVPRTGQIVQASWSRSAM 330
                 79*******..566889**********************************99987788999*********98766 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00083       1.7       4      28 ..      35      57 ..      32      85 .. 0.71
   2 !   15.7   0.1   5.2e-06      0.01     229     299 ..     127     195 ..      87     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00083
      AAA_21  4 liGpNgsGKSnLLdaldllarldrd 28
                + Gp gsGK++ L+++ ++ +   +
  CTQ28367.1 35 MLGPSGSGKTTCLRLIAGFEQ--LS 57
                68**************88754..33 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 5.2e-06
      AAA_21 229 gqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSp 299
                  + + +++lS G+++  a++ al  ++   ++ll+DEp   L+ kl +     lk+l++  g+ +i++TH+ 
  CTQ28367.1 127 AHHRKPSQLSGGQRQRVAIARALVNQP---RVLLLDEPLGALDLKLREQMQVELKKLQQsLGITFIFVTHDQ 195
                 555668899*****9999999999988...**************9999999888888888**********95 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.041        82      25      41 ..      31      47 ..      21      52 .. 0.82
   2 !   12.2   0.1   4.6e-05     0.091     133     213 ..     131     209 ..      76     215 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.041
                SEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnll 41
                +f +++Gp GSGK+  l
  CTQ28367.1 31 EFFSMLGPSGSGKTTCL 47
                678899*******9765 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4.6e-05
                 STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 133 skelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgvtk 213
                 ++++LSgG+++ va+a  +    v++  + llDe   aLD k ++++   lk+ +++    fi +++++     ++  v v+ 
  CTQ28367.1 131 KPSQLSGGQRQRVAIARAL----VNQPRVLLLDEPLGALDLKLREQMQVELKKLQQSlgITFIFVTHDQSEALSMSDRVAVFN 209
                 3459*******99987653....45555779*********************8887755889999999988888877777776 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0058        12      18      46 ..      29      58 ..      22      68 .. 0.78
   2 ?    6.4   0.0    0.0027       5.4      47      91 ..     138     188 ..     131     216 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0058
                H-SEEEEE--TTSSTT.HHHHHHHHHHHHT CS
        PhoH 18 kndivfaiGpaGtGKt.ylavalavealkk 46
                + ++  ++Gp+G+GKt  l + +++e+l+ 
  CTQ28367.1 29 DGEFFSMLGPSGSGKTtCLRLIAGFEQLSG 58
                5678899********735778888877765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0027
                 TS-SEEEEEE-S--T......T----SS---------TTTHHHHHHHTTTS CS
        PhoH  47 kkvkriiltrpavea......geelGflpgdleekvdpylrplydaLkdll 91 
                 ++ +r+ ++r+ v+       +e lG+l+ +l+e++++ l+ l ++L  ++
  CTQ28367.1 138 GQRQRVAIARALVNQprvlllDEPLGALDLKLREQMQVELKKLQQSLGITF 188
                 556666677766665566668************************997554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.7     8e-05      0.16      10      99 ..      35     160 ..      27     198 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8e-05
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee.............erpevvfvtlpsstsskdllrellralglelka......................... 70 
                   G+sG+GKTt+lr ++   +      +             +++ +vf + +      ++l +++  l +++ a                         
  CTQ28367.1  35 MLGPSGSGKTTCLRLIAGFEQLSGGTIHifgqpaselppwqRDVNTVFQDYALFP-HMSILDNVAYGLMVKGMAkkarharaqealekvalgfahhrkp 132
                 57************99887643333333666666666666655555533322222.3333344444333333334444455555555555555544443 PP

      AAA_22  71 .erlsseellealeqalraravielliiDE 99 
                  +    ++ + a+++al ++ +  +l++DE
  CTQ28367.1 133 sQLSGGQRQRVAIARALVNQPR--VLLLDE 160
                 3333333333444444444444..666666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.0   0.00011      0.22      26     142 ..      32     159 ..      17     313 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
      AAA_16  26 lvllsGesGvGKsslvrellr..alekdggif.lrgkcdql....esa..........ipysalaqalareellrqlldeaesaeleawrekleeala. 106
                      G+sG+GK++ +r ++   +l++      + g+  +     +++           p   +++   + +l+ +  ++  +a +++++e+le+++  
  CTQ28367.1  32 FFSMLGPSGSGKTTCLRLIAGfeQLSGG-T-IhIFGQPASElppwQRDvntvfqdyalFPHMSILDNV-AYGLMVKGMAK--KARHARAQEALEKVALg 125
                 55668*************9951133333.2.2244444444344433333333222221112233333.22444444333..45566666666666666 PP

      AAA_16 107 .....avpelagaeasrllellkrllallsrderplvlvlD 142
                        ++l+g +++r++  ++r+l       +p vl+lD
  CTQ28367.1 126 fahhrKPSQLSGGQRQRVA--IARAL----V-NQPRVLLLD 159
                 6665544444444433333..33444....1.345677776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00011      0.22      13      39 ..      21      47 ..      18      50 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                dg +i i+  +++ + GpsGsGK+T l
  CTQ28367.1 21 DGVSIGIRDGEFFSMLGPSGSGKTTCL 47
                566677774459999**********75 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.5   0.00069       1.4       3      21 ..      35      53 ..      33     209 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00069
                EESSTTSSHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavake 21
                + Gp G GKT++ + +a  
  CTQ28367.1 35 MLGPSGSGKTTCLRLIAGF 53
                57**************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 2582.89
//
Query:       CTQ28368.1  [L=370]
Description: putative spermidine/putrescine transporter subunit; periplasmic-binding component of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-24   86.7   4.0    2.9e-24   86.4   4.0    1.1  1  SBP_bac_8       Bacterial extracellular solute-binding protei
    1.6e-20   74.3   6.2    2.1e-20   73.9   6.2    1.1  1  SBP_bac_1       Bacterial extracellular solute-binding protei
    7.7e-14   51.7   1.0    4.8e-09   36.0   0.2    2.1  2  SBP_bac_6       Bacterial extracellular solute-binding protei
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.068   12.7   0.0    2.0  2  Ral             Antirestriction protein Ral
      0.056   12.8   0.5       0.13   11.6   0.0    1.7  2  Glyco_hydro_62  Glycosyl hydrolase family 62
      0.093   12.3   0.0       0.15   11.6   0.0    1.3  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
       0.14   12.2   0.0       0.32   11.1   0.0    1.5  1  UPF0004         Uncharacterized protein family UPF0004


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   4.0   1.1e-27   2.9e-24       2     267 ..      45     316 ..      44     322 .. 0.80

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 1.1e-27
                 HHHHHHHH-TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GG.GS.TTHHH-HH.HHHTT..--TS.----EEEEEEE- CS
   SBP_bac_8   2 lakefekktgvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladls.dl.dnlddltd.alaav..gydgklygvPyasetpy 95 
                 ++++fek+tg +vnv taa+ d    + + +a+g +   d+v+a++da  +l+  + +++++  l   + +l++  ++++   + gk+yg Py+++ p 
  CTQ28368.1  45 WVSQFEKDTGCQVNVKTAATSDE---MVSLMAKGGY---DLVTASGDASLRLIMGKRVQPINtALiAGWGSLDPrIAKGAwfNVGGKVYGTPYQWG-PN 136
                 799***************87663...4444557766...689999*****************64456777787756666567789***********.69 PP

                 EEEEEHHHHHHS.---BHHHHHHHHHHHH.HH-.....SEGG---GGGGGGTHH.....ETTEE-.--H..HHH.HHHHHHHHHHHHTT-EE-S...-- CS
   SBP_bac_8  96 vliynkdllekaedpktwdellaaakklk.gkf.....glpdpasgwlqaalla.....kdgksl.dddggkdglkealellkklkdngktydtga.da 181
                 +l+yn+ +++   +p++w  ++   ++l+ gk+     + +d ++  + aal+      ++g +   +  ++ ++ ++l+ l++ ++ +  y+ +a  +
  CTQ28368.1 137 LLMYNTRVFP-T-PPDSWRVVFV-KQDLPdGKTnqgrvQAYDGPIYIADAALFVkatqpQLGIEDpYQL-TETQYNAVLKVLRDQQPLIHRYWHDAtVQ 231
                 **********.5.*****99974.455544444333336677666655555555555442333321444.566789*************9999885266 PP

                 SSTTTTTSBSEEEE-TTHHHHHH-TTTSEEEE--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S- CS
   SBP_bac_8 182 vsefanGevaftingswdiaaaqkagkklgaivpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnks 267
                 +++f+n  va++++++ +++ ++++g++++ ++pk+g+  ++++++  + ak++   A ++++w ++p  q + a   g +pv ++
  CTQ28368.1 232 MNDFKNEGVAASSSWPYQANGLKAEGQPVATVFPKEGVTGWADTTMLHSEAKHPVC-AYKWMNWSLTPKVQGDVAAWFGSLPVVPE 316
                 67**********************************88777778888999*****6.**********************9999875 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   6.2   8.3e-24   2.1e-20      15     314 ..      46     301 ..      33     302 .. 0.81

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 8.3e-24
                 HHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCEEEESEEEE. CS
   SBP_bac_1  15 akafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkildskvlyvPly. 112
                 + +fek  +g +V++++  +++ +      ++a    +D+++ ++d   rl+ ++ ++p+++ ++a ++  +++ a+ ++  v++k+++      P++ 
  CTQ28368.1  46 VSQFEK-DTGCQVNVKTAATSDEMV----SLMAKG-GYDLVTASGDASLRLIMGKRVQPINTALIAGWGSLDPRIAKGAWFNVGGKVYG-----TPYQw 133
                 478***.9*********97777777....455555.258888877777788888********************999999888777666.....9***5 PP

                 EEEEEEEETTTHHCTTGGGSHBHH.HHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHHHHHHHHHHHHHHH CS
   SBP_bac_1 113 aargliYNkdlfekagldppwtWd.elveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaatylvklyavanlt 210
                 ++++l+YN+ +f     +pp +W   +v+ +   ++ + + ++   g  +  +a++f  a   +l          g+++p++ t ++y   l+    l 
  CTQ28368.1 134 GPNLLMYNTRVFP----TPPDSWRvVFVKQDLPDGKTNQGRVQAYDGPIYIADAALFVKATQPQL----------GIEDPYQLTETQYNAVLK---VLR 215
                 5************....5666***77777777777777777444444445555555555555555..........566666666555555555...567 PP

                 HHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCSTHHHHHHHHHHHT CS
   SBP_bac_1 211 kelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgsknpeaAkkFldfll 309
                 ++++  + ++ d +   ++f++  +a+  +++++a+  + +++ va++++ke++ +                  +a++ ++ + +k+p+ A k++++ l
  CTQ28368.1 216 DQQPLIHRYWHDATVQMNDFKNEGVAASSSWPYQANGLKAEGQPVATVFPKEGVTG------------------WADTTMLHSEAKHPVCAYKWMNWSL 296
                 7*******************************************************..................************************* PP

                 SHHHH CS
   SBP_bac_1 310 speaq 314
                 +p+ q
  CTQ28368.1 297 TPKVQ 301
                 **988 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     7e-06     0.018       5      78 ..      78     153 ..      76     158 .. 0.71
   2 !   36.0   0.2   1.9e-12   4.8e-09     111     219 ..     205     314 ..     175     328 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7e-06
   SBP_bac_6   5 dlilsfdkdflekfieeglfqpld...panlpnvnkdfa.eeglkdpdgkyy..pygvgplvlavnkdrlkgrpvPksWa 78 
                 dl++  + d+  ++i  + +qp++    a + ++++ +a  ++++ + gk y  py++gp +l++n+ +++    P sW 
  CTQ28368.1  78 DLVT-ASGDASLRLIMGKRVQPINtalIAGWGSLDPRIAkGAWFNVG-GKVYgtPYQWGPNLLMYNTRVFPTP--PDSWR 153
                 6666.556666666677777888877755556666555535555555.555558****************766..****6 PP

  == domain 2  score: 36.0 bits;  conditional E-value: 1.9e-12
   SBP_bac_6 111 fgedgvkkllrnlkanlhpaqmvkaagslesgepavsvvpyffadilpekkkgknlkvvwPedGalvspifmlvkkg.kkkelakafidfllspevqai 208
                 +  ++v k lr+   + h ++ +  ++ ++ +++ v  +  + +++   k +g++++ v P++G + + ++ ++ ++ k++  a++++++ l p+vq +
  CTQ28368.1 205 TQYNAVLKVLRDQQPLIHRYWHDATVQMNDFKNEGVAASSSWPYQANGLKAEGQPVATVFPKEGVTGWADTTMLHSEaKHPVCAYKWMNWSLTPKVQGD 303
                 44677888888888999999999999999999999**************************************************************** PP

   SBP_bac_6 209 lakaggvfPvv 219
                 +a+ +g++Pvv
  CTQ28368.1 304 VAAWFGSLPVV 314
                 *****99*995 PP

>> Ral  Antirestriction protein Ral
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.6e-05     0.068       7      42 ..      42      77 ..      37      80 .. 0.89
   2 ?   -1.3   0.0      0.63   1.6e+03      35      44 ..     346     355 ..     344     365 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.6e-05
         Ral  7 knqwcsrfkkckGckldaecmvkPeemalvredGki 42
                +  w s+f k  Gc+++       +em+ ++  G +
  CTQ28368.1 42 QYDWVSQFEKDTGCQVNVKTAATSDEMVSLMAKGGY 77
                458**************************9998865 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.63
         Ral  35 lvredGkivd 44 
                 +v e Gk+v 
  CTQ28368.1 346 PVAEGGKYVP 355
                 899*****94 PP

>> Glyco_hydro_62  Glycosyl hydrolase family 62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     5e-05      0.13      88     137 ..     125     177 ..     113     189 .. 0.76
   2 ?   -2.0   0.1      0.69   1.8e+03      85     105 ..     280     300 ..     255     307 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5e-05
  Glyco_hydro_62  88 kiwvlayqwgpttfsyrtssdptnangwsa...eqalfsgkisdsstgaidqt 137
                     k++   yqwgp  + y+t   pt +++w     +q l  gk  +    a d  
      CTQ28368.1 125 KVYGTPYQWGPNLLMYNTRVFPTPPDSWRVvfvKQDLPDGKTNQGRVQAYDGP 177
                     566778**********************8522257788888777766666654 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.69
  Glyco_hydro_62  85 apkkiwvlayqwgpttfsyrt 105
                     +  k  v ay+w +++++ + 
      CTQ28368.1 280 SEAKHPVCAYKWMNWSLTPKV 300
                     334445677777777776665 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     6e-05      0.15      21      73 ..      47      99 ..      28     110 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6e-05
                    HHHHHHHSSEEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS-EEEE CS
  Phosphonate-bd 21 dyLseelGvevelvvatdyaavvealragqvDiaflgplayvqardqagvepl 73
                      +++ +G +v++++a++ +++v  ++ g +D++ +++ a +++   + v+p+
      CTQ28368.1 47 SQFEKDTGCQVNVKTAATSDEMVSLMAKGGYDLVTASGDASLRLIMGKRVQPI 99
                    567999*****************************999888888777777776 PP

>> UPF0004  Uncharacterized protein family UPF0004
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00013      0.32       7      42 ..      53      91 ..      49      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                -S-CCCC...HHHHHHHHHTTTSSS----SSS--SEEEE CS
     UPF0004  7 lGCqmNe...vdseelaslLkkegyelvedeeeAdvvlv 42
                 GCq+N+   + s+e++sl++k gy+lv+ + +A + l+
  CTQ28368.1 53 TGCQVNVktaATSDEMVSLMAKGGYDLVTASGDASLRLI 91
                7*****83334689******************9998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2927.33
//
Query:       CTQ28369.1  [L=470]
Description: putative DNA-binding transcriptional regulator fused with a domain with PLP-binding motif [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-32  112.5   0.0    3.3e-32  112.0   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
    4.5e-12   45.4   0.0    1.5e-11   43.8   0.0    1.9  1  GntR             Bacterial regulatory proteins, gntR family
  ------ inclusion threshold ------
      0.028   13.0   0.0      0.043   12.3   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
      0.037   14.0   2.1      0.049   13.5   0.7    1.9  2  APH              Phosphotransferase enzyme family
      0.059   13.6   0.1       0.22   11.8   0.1    2.0  1  GGDEF_2          GGDEF-like domain
       0.11   11.2   0.0       0.14   11.0   0.0    1.2  1  Aminotran_MocR   Alanine-glyoxylate amino-transferase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.0   1.1e-35   3.3e-32      44     349 ..     146     447 ..     121     461 .. 0.86

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 1.1e-35
                    THHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHH CS
  Aminotran_1_2  44 dglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeeal 139
                     g +el++a+a+ +   +++++ ++ ++v + Ga +++++  ++   +pgd ++v +p +    ++l+  +++  +++++     ++dl ale+al
     CTQ28369.1 146 PGNAELRHAIARRYA-LQGMNVSPD-EIVITAGALEALNLSLQAV-TEPGDWVVVENPCFYGALQALERLRLKALSVATD--VREGIDLTALEAAL 236
                    3679*******9999.789999999.9999999999999999999.79******************************77..6778********** PP

                    TTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEE CS
  Aminotran_1_2 140 keapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilg 235
                    ++ p +     + l ++ +NP G  ++ e+  +l++l  +yn++l+ D++Y++++fg +++ ++ ++  +e  +l ++s+sK + ++G+R+G++++
     CTQ28369.1 237 QNYPVKA----CWLMTNGQNPLGFTLSAEKKAALVALLARYNVMLIEDDVYSELYFGREKPLPAKFWDRQE-MTLHCSSFSKCL-VPGFRIGWVAA 326
                    **87433....45667779**************************************88766644444444.46********87.8********** PP

                    .EHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS...TEEEECCSCSSEEEEEETHH.CHHHHHHHHHH CS
  Aminotran_1_2 236 .naavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael...glkvlasqsgmflltdlsae.takelskkLle 326
                     ++a + q+ +l +++  ss++q a++  ls++  ++ +l   r++l++r ++  ++L +    +++v  s+sg+fl+ +l++  +a++ls   l 
     CTQ28369.1 327 gKQARRIQQLQLMSTLSTSSPMQLALVDYLSTKR-YDAHLRRLRRQLAERKQQAWQALLRHlppEVIVHHSDSGYFLWIELPEGaDASALSARALA 421
                    755555555555555566**************66.788****************99997778*******************988899999999999 PP

                    TCTEEEEEGGGGTS....TTEEEEECT CS
  Aminotran_1_2 327 evgvyvtpgtsftv....pgrlRitvA 349
                      ++ + pg+ f +    ++++R++ A
     CTQ28369.1 422 S-HISIAPGKMFSTsdswTSFFRFNTA 447
                    9.9********************9986 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   4.9e-15   1.5e-11       1      64 []       3      66 ..       3      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 4.9e-15
                HHHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  1 lyeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                +y+q++++L+e+I  g++ pGd+LPs re +   g s +tv  A++ Le++g +++r+++G +V
  CTQ28369.1  3 KYQQLAQQLTEQIALGVWLPGDRLPSLREQVISSGMSFMTVSHAYQLLESQGRIVARPQSGYYV 66
                59***********************************************************998 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.4e-05     0.043      71     149 ..     172     253 ..     153     287 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.4e-05
                      EEESSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHT.HHHTTCEEEEESTTSHHHHHHHCCT.TEEEEEEESS-.TT CS
  Cys_Met_Meta_PP  71 lavssGmaAiaaailallkaGdeivvsddlYggtqrllkkv.lkklgievkfvdtsdleelekaike.ntklvylEtpt.np 149
                      ++++  + A++++++a+ + Gd +vv++ ++ g+ + l+++ lk l++ +++ +  dl +le+a+++  +k+ +l t + np
       CTQ28369.1 172 VITAGALEALNLSLQAVTEPGDWVVVENPCFYGALQALERLrLKALSVATDVREGIDLTALEAALQNyPVKACWLMTNGqNP 253
                      556666789999**************9998777766666652777*********************9899**9998876355 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.59   1.8e+03     118     132 ..     113     127 ..      25     196 .. 0.61
   2 ?   13.5   0.7   1.7e-05     0.049      98     170 ..     326     394 ..     264     396 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.59
                 HHCHTCCHHHHHHCH CS
         APH 118 flaqdlellrqlesa 132
                 f++++l++l+ql+++
  CTQ28369.1 113 FPDPRLFPLQQLNRS 127
                 223334444444333 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.7e-05
                 HHHHHCCHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHHH--SSS-EEEE- CS
         APH  98 lgeflaalhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeqvlaalaallpgelptvllH 170
                 +g   ++++q++  +   ++ + q + ++ +  ++  ++l+++ ++ l+e+ +q+++al+++lp   p+v++H
  CTQ28369.1 326 AGKQARRIQQLQLMSTLSTSSPMQLALVDYLSTKRYDAHLRRLRRQ-LAERKQQAWQALLRHLP---PEVIVH 394
                 5666677777764434444444454444444444444666666677.999**************...9****9 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   7.4e-05      0.22      33      82 ..     372     421 ..     328     436 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.4e-05
     GGDEF_2  33 daerllraleealralgpdalvavrgdrlvlllpaedeedaeallerlar 82 
                  aer ++a++++lr+l p+++v+  ++   l++ +++ +da+al +r+++
  CTQ28369.1 372 LAERKQQAWQALLRHLPPEVIVHHSDSGYFLWIELPEGADASALSARALA 421
                 55667899*****************************9999966655543 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.5e-05      0.14     126     217 ..     194     284 ..     170     428 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.5e-05
                     EEEEEES--HHHHHHHHHHT-EEEEEEEE.TTEE-HHHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTS CS
  Aminotran_MocR 126 kllvtvpGydrhfllleelGielltvdlq.ddGpdvdaveklvaedasvkGilavpkysnptGetiseevarrlaalkaaapdfrifaddaya 217
                      ++v  p +   +  le+l ++ l+v  +  +G d+ a+e    ++  vk  + + +  np G t+s+e+   l+al a   +  +  dd y+
      CTQ28369.1 194 WVVVENPCFYGALQALERLRLKALSVATDvREGIDLTALEAAL-QNYPVKACWLMTNGQNPLGFTLSAEKKAALVALLA-RYNVMLIEDDVYS 284
                     567778888888888999999999887653589*****99765.55679***************************975.5677788888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3522.89
//
Query:       CTQ28370.1  [L=32]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 263.31
//
Query:       CTQ28371.1  [L=465]
Description: ubiquinol oxidase subunit I, cyanide insensitive [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     1e-165  551.5  22.5   1.1e-165  551.3  22.5    1.0  1  Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
  ------ inclusion threshold ------
      0.036   14.1   7.3      0.055   13.6   0.2    3.1  3  DUF4235         Protein of unknown function (DUF4235)


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_I  Cytochrome bd terminal oxidase subunit I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  551.3  22.5  1.3e-169  1.1e-165       1     418 []       9     437 ..       9     437 .. 0.99

  Alignments for each domain:
  == domain 1  score: 551.3 bits;  conditional E-value: 1.3e-169
  Cyt_bd_oxida_I   1 laRlqfaltavfHflfvpltlGlalllailetlylrtgdekykklakfwgklfainFavGvvtGivlefqfgtnWseysrfvGdifgapLaiEgl 95 
                     laR+qfa+t++fH++f+++t+Gla +la+le l+l+t++++++ l++fw+k+fa+nF++Gvv+G+v+++qfgtnWs++s+f+G+i g++L++E+l
      CTQ28371.1   9 LARVQFAFTVSFHIIFPAITIGLASYLAVLEGLWLKTKNPVWRSLYHFWSKIFAVNFGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLTYEVL 103
                     89********************************************************************************************* PP

  Cyt_bd_oxida_I  96 lAFflEstflglmlfgwdrvskklhllatwlvaigtllSalwIlaanswmqtPvGaelnpdtgraeltdflavlfnpsalakflHtvlaalltaa 190
                     +AFflE+ flg+mlfgw+rv ++lh++at++va+gt++S++wIla nswmqtP+G+e++ d+ +++ +d+lav+fnps+++++lH+++aa+l +a
      CTQ28371.1 104 TAFFLEAGFLGVMLFGWNRVGPGLHFFATCMVALGTIISTFWILASNSWMQTPQGFEIV-DG-QVVPVDWLAVIFNPSFPYRLLHMTVAAFLSSA 196
                     **********************************************************9.55.899***************************** PP

  Cyt_bd_oxida_I 191 ffvagvsawyllr.rekefarkslkialvvalvaallqallGdlsgkevaetqpaKlAAmeglwetee...aplslfgipdeeeeknefaieiPg 281
                     +fv + +aw+llr +++ + rk++++al+++l++a++qal+Gd++g +++++qpaK+AA+eg+we+     +pl lfg+pd +++++++ +eiP 
      CTQ28371.1 197 LFVGASAAWHLLRgNQSPAIRKMFSMALWMTLLVAPVQALIGDMHGLNTLKHQPAKIAAIEGHWENPPgepTPLLLFGWPDMDQQRTRYGLEIPA 291
                     *************77677**********************************************99878899*********************** PP

  Cyt_bd_oxida_I 282 llsllatgsldgevkGlndlpkeevPpvalvfwsfrimvglgvlllllallalll.........rwllrllllaiplpfiaveaGWivtevGRqP 367
                     l sl++t+sld++v+ l+++++ee+P+ ++vfwsfr+m glg+l+lll +lal+l         r +lr++l+++p ++ia+ aGW++tevGRqP
      CTQ28371.1 292 LGSLILTHSLDKQVPALKEFAPEERPNSTVVFWSFRLMAGLGMLMLLLGVLALWLrrgdrlyhsRPFLRFALWMGPSGLIAILAGWVTTEVGRQP 386
                     ****************************************************************77***************************** PP

  Cyt_bd_oxida_I 368 WivygllrtadavspvsagevllslilflllylvLlvvevylllklikkgp 418
                     W+vyg+ rtadavs +   ++ +sl++f+++y +++ v++ ++l+li+kgp
      CTQ28371.1 387 WVVYGVQRTADAVSAHGDLHMSVSLLTFIVVYSAVFGVGYSYMLRLIRKGP 437
                     *************************************************97 PP

>> DUF4235  Protein of unknown function (DUF4235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2      0.53   4.7e+03       4      24 ..      63      83 ..      62      87 .. 0.67
   2 ?   13.6   0.2   6.1e-06     0.055       9      57 ..     187     238 ..     181     243 .. 0.87
   3 ?    3.7   0.2    0.0071        64       7      72 ..     370     441 ..     368     446 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.53
     DUF4235  4 lglvlglvaGavagkafaavW 24
                +++++g+v G+v    f + W
  CTQ28371.1 63 VNFGMGVVSGLVMAYQFGTNW 83
                567788888887665555555 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6.1e-06
     DUF4235   9 glvaGavagkaf...aavWkkvtgedaPkdpkdedvslrevllfAaisGavl 57 
                   va+++++++f   +a+W++++g++ P+  k  ++ l++ ll A ++++++
  CTQ28371.1 187 MTVAAFLSSALFvgaSAAWHLLRGNQSPAIRKMFSMALWMTLLVAPVQALIG 238
                 679999999997555899**********99999****************997 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.0071
     DUF4235   7 vlglvaGavagkafaavWkkvtge...daP..kdpkdedvslre.vllfAaisGavlavvrvaadRgtargv 72 
                 +++++aG+v   + ++ W     +   da   + + + +vsl   ++++ a+ G+ ++ +  ++++g +++ 
  CTQ28371.1 370 LIAILAGWVTTEVGRQPWVVYGVQrtaDAVsaHGDLHMSVSLLTfIVVYSAVFGVGYSYMLRLIRKGPQEML 441
                 578999******999999876666334444444555788888877889999999999999888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3749.42
//
Query:       CTQ28372.1  [L=336]
Description: Cytochrome d ubiquinol oxidase, subunit II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-95  319.8  34.3    2.1e-95  319.6  34.3    1.0  1  Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
  ------ inclusion threshold ------
      0.082   12.6   0.2       0.16   11.7   0.2    1.4  1  TMEM252          Transmembrane protein 252 family


Domain annotation for each model (and alignments):
>> Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.6  34.3   2.3e-99   2.1e-95       1     303 []       5     325 ..       5     325 .. 0.91

  Alignments for each domain:
  == domain 1  score: 319.6 bits;  conditional E-value: 2.3e-99
  Cyt_bd_oxida_II   1 lqliwflligvllagYvvldGfDlGvGillpllakkdeerrlllnsigpvWdgnevWLvtaggalfaaFPlayatlfsglylpllliLlglilR 94 
                      l++iwf++i+++ ++Y+v+dGfDlG+G+l+ +++    +r++++ns++pvWdgne+WLv++g++lf+aFPlaya+++ +l +pl+l+L+gli+R
       CTQ28372.1   5 LSVIWFVIIVFATLMYIVMDGFDLGIGLLFSTVRG-GGDRDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIIDALSIPLTLMLIGLIFR 97 
                      679*****************************743.45******************************************************** PP

  Cyt_bd_oxida_II  95 gvafefrskaeskrwrklwdlaffigSllaalllGvalgnllqGvpfdad.eygflsdllnpfallvglllvalflllGalylalktegelqer 187
                      gvafefr +a+ +++r +wd aff gSlla++ +Gv++g++++G+ ++ + + g ++d+l+pf+l++g+ l+++++llGa++l++k+eg+lq++
       CTQ28372.1  98 GVAFEFRFQAT-PSHRPFWDRAFFGGSLLATFSQGVVVGAVINGFTVSGRaFSGGMFDWLTPFSLFCGFGLCVTYALLGATWLVMKSEGALQQK 190
                      *********86.689*******************************864434466778************************************ PP

  Cyt_bd_oxida_II 188 arrlalvlalvllvllvvvllwtll.................lvllllavlalllavlllrk....kreglaflasaltvllvvlllavslfPy 260
                      +r++++ l+ +ll++++v++lwt+l                 l  l++++l++l+  +l+r+    +r++ +f++++++v+l + +l++s++P 
       CTQ28372.1 191 MRSASRQLLGALLAVFAVISLWTPLahpaiaarwfslpnlyfL--LPVPLLVILVSGWLWRTlhqrDRHVSPFTLTLGLVFLGFSGLGISIWPH 282
                      **************************************98542..44444444444433333331366888*********************** PP

  Cyt_bd_oxida_II 261 llpssltianaasseytlkvmlivalillplvlaytawlyrvf 303
                      ++p+ +t+++aa++++++ +ml++al+++p++l+yt w+y+vf
       CTQ28372.1 283 IIPPAITLWQAAAPPQSQGFMLVGALLIIPVILGYTCWSYYVF 325
                      ******************************************9 PP

>> TMEM252  Transmembrane protein 252 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   1.8e-05      0.16      12      46 ..     227     262 ..     219     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.8e-05
     TMEM252  12 lilaylllPlGf.villsGifWstyrqaseskevfs 46 
                 l   y+llP+ + vil+sG +W t +q  ++ + f+
  CTQ28372.1 227 LPNLYFLLPVPLlVILVSGWLWRTLHQRDRHVSPFT 262
                 5667*****98538999**********998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2698.84
//
Query:       CTQ28373.1  [L=41]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-17   61.2   9.8    6.5e-17   61.1   9.8    1.0  1  DUF2474   Protein of unknown function (DUF2474)


Domain annotation for each model (and alignments):
>> DUF2474  Protein of unknown function (DUF2474)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   9.8   3.6e-21   6.5e-17       2      38 ..       4      40 ..       3      41 .] 0.97

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 3.6e-21
     DUF2474  2 plwkRlgWLvlIWaaSVlaLgvvAlllRllMtaAGlk 38
                 + kRl+WL+++W++SVl+L++++ll+RllMtaAGlk
  CTQ28373.1  4 AWPKRLLWLIALWGGSVLTLAAISLLFRLLMTAAGLK 40
                6***********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      128  (0.00713927); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 336.87
//
Query:       CTQ28374.1  [L=101]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 865.27
//
Query:       CTQ28375.1  [L=76]
Description: hypothetical protein CH1034_230049 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-27   94.7   1.5    3.5e-27   94.6   1.5    1.0  1  DUF2554   Protein of unknown function (DUF2554)


Domain annotation for each model (and alignments):
>> DUF2554  Protein of unknown function (DUF2554)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   1.5   1.9e-31   3.5e-27       1      74 [.       1      74 [.       1      76 [] 0.97

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 1.9e-31
     DUF2554  1 mltkalsvvlltcalfsGqllakqkdhefvwvktvdhqlrheadsdelravaeesaeGlrehfywqksrkpeay 74
                ml +++s +ll calfsG lla++++he+  v++ + ql headsdelr+  ee+a  lreh+ wq  rkp a 
  CTQ28375.1  1 MLKRSISALLLLCALFSGHLLAHRQGHEYFPVQSLEQQLLHEADSDELRSQHEEAAADLREHHRWQDDRKPRAS 74
                8999*******************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 640.19
//
Query:       CTQ28376.1  [L=653]
Description: putative peptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-73  247.1   0.1    5.3e-71  238.5   0.0    2.2  2  Peptidase_U32  Peptidase family U32
      1e-18   67.9   0.0      2e-18   67.0   0.0    1.5  1  DUF3656        Collagenase


Domain annotation for each model (and alignments):
>> Peptidase_U32  Peptidase family U32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.5   0.0   5.9e-75   5.3e-71       2     231 ..      79     305 ..      78     307 .. 0.93
   2 !    6.6   0.0   0.00042       3.8      38      66 ..     524     552 ..     522     560 .. 0.87

  Alignments for each domain:
  == domain 1  score: 238.5 bits;  conditional E-value: 5.9e-75
  Peptidase_U32   2 eklrkyleklaelgvdavivqDpgvlelareeapelelhlStqanitnseavrflkelGasrvvlaRElsleeikaikekvpdvelEvfvhGalcv 97 
                    e +++++++l+++gvda+ivqD+g++el   ++p +elh+Stq+ i+++e+++fl++ G+s++vlaREl+l +ikai +++ d  +E f+hGalcv
     CTQ28376.1  79 EPAQRLITDLYDAGVDALIVQDMGIMEL---DLPPIELHASTQCDIRSVEKAKFLSDAGFSQIVLARELNLSQIKAIYDHT-DATIEFFIHGALCV 170
                    5678899*********************...99************************************************.************** PP

  Peptidase_U32  98 aysGrcllssylsgrsanrgecaqpcrldyrlieekekgeeepieedekgtyllspkdlclieelpelleaGvdslKIeGRmkspeyvatvvrvYr 193
                    aysG+c++s++ +grsanrg+c+q+crl+y+l +++ +   ++       ++lls+kd     +l +l++aGv s+KIeGR+k+ +yv++++  Yr
     CTQ28376.1 171 AYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVAYE-------KHLLSMKDNDQTANLAALIDAGVRSFKIEGRYKDMSYVKNITAHYR 259
                    *******************************999998776663.......3********************************************* PP

  Peptidase_U32 194 eaidallagr........eevkeelkeeleklanrgltsgfllgrk 231
                    +++da++++r         + +  +    +k+++rg t++f+  rk
     CTQ28376.1 260 QMLDAIIEDRgdlarasaGRTEHFFIPSTDKTFHRGSTDYFVNARK 305
                    **********998877755555667777888899998888887665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00042
  Peptidase_U32  38 elhlStqanitnseavrflkelGasrvvl 66 
                    e hlS  an++n++a +f++++G++ + +
     CTQ28376.1 524 ETHLSFLANVYNHKARAFYQRYGVQLIDA 552
                    68*********************987655 PP

>> DUF3656  Collagenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   2.3e-22     2e-18       2     107 .]     391     504 ..     390     504 .. 0.92

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 2.3e-22
     DUF3656   2 yrtsdkklteelekslek.seerkipvdlelaakegeplkltvtde............leeAkkrplteenirkqLsklGgtpFeleeieidldglfiP 87 
                  r+ d+    +++++l k s+er+i vd++l++ + e+l lt+t+e            + eA++++ + +n+r+  +klG+t+++++e++++l +lf+P
  CTQ28376.1 391 NRNLDH----NWQQALLKtSSERRIAVDVTLSGWQ-EQLVLTMTCEdgvsvthtldgeFAEANQAEKALANLRDGVTKLGQTIYYAREVQVNLPPLFVP 484
                 577777....8999998999***********8664.68999999889999999999**9999999999*************************9***** PP

     DUF3656  88 vseLnelRRealekLeearl 107
                  s Ln+lRRe+ e L+earl
  CTQ28376.1 485 NSLLNQLRRETAEMLDEARL 504
                 *****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 4881.29
//
Query:       CTQ28377.1  [L=189]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-16   58.4   0.0    7.2e-16   58.0   0.0    1.2  1  HTH_3     Helix-turn-helix
      1e-10   41.8   0.0    1.8e-10   41.0   0.0    1.4  1  HTH_31    Helix-turn-helix domain
    5.1e-09   35.7   0.1    8.6e-09   35.0   0.1    1.3  1  Cupin_2   Cupin domain
    2.7e-06   27.3   0.0    3.5e-06   27.0   0.0    1.2  1  HTH_19    Helix-turn-helix domain
    4.3e-06   26.5   0.0    6.9e-06   25.8   0.0    1.3  1  HTH_25    Helix-turn-helix domain
    0.00024   21.5   0.0    0.00033   21.0   0.0    1.2  1  HTH_26    Cro/C1-type HTH DNA-binding domain
     0.0017   18.3   0.1     0.0025   17.7   0.1    1.2  1  HTH_37    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.066   13.2   0.1       0.11   12.5   0.1    1.3  1  HTH_11    HTH domain
        0.1   12.4   0.1        0.2   11.5   0.1    1.5  1  HTH_23    Homeodomain-like domain
       0.13   12.1   0.1       0.26   11.1   0.1    1.5  1  HTH_IclR  IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0     4e-19   7.2e-16       1      53 [.      11      63 ..      11      65 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 4e-19
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvsld 53
                lk lR+q+g+s+  LAe++Gvs++ + +iE++e++P++ tl+k+a  L+v+++
  CTQ28377.1 11 LKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPFS 63
                799***********************************************986 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0     1e-13   1.8e-10       2      57 ..       7      61 ..       6      69 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 1e-13
      HTH_31  2 LGalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgld 57
                L+a+L++lR+++G+s+  +Ae +gvs++ l+++E+ +   p+ a+l ++a++l+++
  CTQ28377.1  7 LAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNES-SPTVATLWKIATGLNVP 61
                99************************************.6*************997 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.1   4.8e-12   8.6e-09       3      68 ..     103     169 ..     101     172 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 4.8e-12
                 EEEETTEEEEEECSSSEE.EEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEE CS
     Cupin_2   3 velppGesapshrHpged.effyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparll 68 
                 ++l+pG+ ++s  H+    e ++V++G++ l + ge++ l+aG+   f     H++rN+g ++a++ 
  CTQ28377.1 103 ITLAPGALSESTPHEKGViEHVVVISGTLDLCLQGEWHSLQAGEGRRFAGDATHAYRNRGAQAAHFH 169
                 689****889999988888*****************************************9999885 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.9e-09   3.5e-06       4      59 ..      11      65 ..       8      71 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.9e-09
      HTH_19  4 LkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyl 59
                Lk +R ++g+++  lae++g+s++++ +iE +++  p+  +l kia  l+++  ++
  CTQ28377.1 11 LKTLRQQRGWSLSRLAEETGVSKAMLGQIERNES-SPTVATLWKIATGLNVPFSAF 65
                99******************************99.**********99999887666 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.8e-09   6.9e-06       2      35 ..      11      44 ..      10      47 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3.8e-09
                HHHHHHTTT--HHHHHHHSS--HHHHHHHHCT-- CS
      HTH_25  2 LraaRearglsleevaketkIrkdylealEeddf 35
                L+  R++rg+sl  +a+et ++k++l ++E++++
  CTQ28377.1 11 LKTLRQQRGWSLSRLAEETGVSKAMLGQIERNES 44
                8999**************************9986 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.9e-07   0.00033       2      61 ..      11      69 ..      10      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.9e-07
      HTH_26  2 LrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLleye 61
                L+ l ++rg + s+La+ tg+s+a l  +  ++ ++++  tL ki++ L++ ++  +++ 
  CTQ28377.1 11 LKTLRQQRGWSLSRLAEETGVSKAMLGQIERNE-SSPTVATLWKIATGLNVPFSAFIVPD 69
                888999***************************.7****************998888775 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   1.4e-06    0.0025      17      71 ..       5      58 ..       1      60 [. 0.92

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.4e-06
                HHHHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHHHHHHHHT CS
      HTH_37 17 aqlalaiaeliekrelsqseaaqllgiaqPkvsrllrgklsrfsldkLlnlltal 71
                  la++++ l+++r++s s +a+ +g++++ + +++r + s+ ++ +L +++t l
  CTQ28377.1  5 QHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIER-NESSPTVATLWKIATGL 58
                57999*******************************9.**********9999987 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.1e-05      0.11       6      30 ..      11      34 ..       6      36 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.1e-05
      HTH_11  6 lelLleargpisgeeLAeeLnvSrr 30
                l+ L+++rg +s ++LAee++vS++
  CTQ28377.1 11 LKTLRQQRG-WSLSRLAEETGVSKA 34
                889*99999.*************86 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00011       0.2      11      39 ..      11      41 ..       3      46 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
      HTH_23 11 llllae..GlsvreIAreLgvsrrTvyrwlk 39
                l+ l++  G+s ++ A+e gvs+  + ++ +
  CTQ28377.1 11 LKTLRQqrGWSLSRLAEETGVSKAMLGQIER 41
                56666679**************988877755 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00014      0.26      12      33 ..      14      34 ..       5      36 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
                -CTTBSS-BHHHHHHHHTS-HH CS
    HTH_IclR 12 laeapqeltlselArrtglpkS 33
                l+++ ++++ls lA++tg++k+
  CTQ28377.1 14 LRQQ-RGWSLSRLAEETGVSKA 34
                5555.559************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1502.96
//
Query:       CTQ28378.1  [L=388]
Description: putative benzoate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-139  465.4  52.2   1.3e-139  465.2  52.2    1.0  1  BenE      Benzoate membrane transport protein


Domain annotation for each model (and alignments):
>> BenE  Benzoate membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  465.2  52.2  7.4e-144  1.3e-139       4     377 ..       7     380 ..       4     381 .. 0.99

  Alignments for each domain:
  == domain 1  score: 465.2 bits;  conditional E-value: 7.4e-144
        BenE   4 slsavlagllavligyagslviifqaaqaaglseaqiaswllalslvmglsgillslryrvPvvtaWstPgaalLvtslpglslaeavgaflvsaallv 102
                  l+++ ag++avl+gya+s++ii+qaa+aag+++ qia+w++al+l+mg+s++ ls++ +vPv+taWstPgaalLv+ l+g++laeavg f++++al+v
  CTQ28378.1   7 PLPTLFAGFVAVLVGYASSAAIIWQAAAAAGATPGQIAGWMTALGLAMGISTLALSAWRKVPVLTAWSTPGAALLVSGLQGVTLAEAVGIFIFANALIV 105
                 57899********************************************************************************************** PP

        BenE 103 lvGisgaldrlvkriPkslaaallagillrfglkavkaleqqpllvlalllsyllarrfaPryavllvLvvgvlvavllGklelaalalelarpewitP 201
                 ++G +g ++rl++ iP+slaaa+lagillrfgl+a++ l+++  l++ +l+++ll++++ Pr+av+++Lv+g l+a+++G++ +aa++l+ ++pew++P
  CTQ28378.1 106 ICGATGLFARLMQIIPHSLAAAMLAGILLRFGLQAFAGLQDHLPLCGGMLAAWLLCKALWPRFAVVAALVIGALIAAASGDVASAAVPLAFVTPEWVAP 204
                 *************************************************************************************************** PP

        BenE 202 efslaallslalPlvlvaltsqflpGlavLkaagYeapakplivatglasllaapfGgvtvnlaaitAaictgpdahedkarryvaalaaglfyllagi 300
                 +f+ a lls++lP++lv+++sq+ pG+a L+a+gY +p++ liv++g ++ll+apfG++++ +aaitAaic++p+ah+d+++r+ aa+aag+fyllag+
  CTQ28378.1 205 QFTPALLLSVGLPFFLVTMASQNAPGFATLQASGYTVPVSALIVVCGGLALLLAPFGVYSICIAAITAAICQSPEAHPDPNQRWLAAIAAGGFYLLAGL 303
                 *************************************************************************************************** PP

        BenE 301 faatlvalfaalPkelvallAglALlgaiasalqaalkderereaalvtflvtasgltllgigaafwGlvlGllvll 377
                 f+++++al++alP +++++lAglALlg+i+++l +a+++  er+aa++tflvtasg+tl gig+afwG+vlG +++ 
  CTQ28378.1 304 FGGSITALMSALPPAWIQMLAGLALLGTIGGSLFQAVHQASERDAAVLTFLVTASGVTLAGIGSAFWGVVLGGVSYG 380
                 ************************************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2723.93
//
Query:       CTQ28379.1  [L=289]
Description: Transcriptional regulator, AraC family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-24   84.2   0.0    9.2e-11   41.6   0.0    2.5  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara
    5.9e-23   80.9   1.3    1.2e-22   80.0   0.8    1.8  2  HTH_18    Helix-turn-helix domain
     0.0061   16.3   0.3       0.25   11.1   0.0    2.8  3  HTH_IclR  IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   4.1e-14   2.5e-10       1      41 [.     194     234 ..     194     235 .. 0.96
   2 !   41.6   0.0   1.5e-14   9.2e-11       6      41 ..     247     284 ..     245     285 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 4.1e-14
                 HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyr 41 
                 +  +l+++lt++d+A+++g+S+++F r F++ ++m P+qy 
  CTQ28379.1 194 IDAHLDQPLTLADLAQQAGLSEFHFARMFRQSLNMAPHQYV 234
                 6789************************************6 PP

  == domain 2  score: 41.6 bits;  conditional E-value: 1.5e-14
                 SCT.--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   6 stn.ltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                 +++ l +++iA ++gf S+s+Fs++ k++tG tPsq r
  CTQ28379.1 247 CHSaLPLTEIALACGFsSPSHFSHRVKAATGLTPSQLR 284
                 45559*******************************98 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         2   1.2e+04       8      27 ..      99     118 ..      95     121 .. 0.71
   2 !   80.0   0.8     2e-26   1.2e-22       1      80 [.     207     285 ..     207     286 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2
                 -HHHHHHHHHHHTSS-HHHH CS
      HTH_18   8 srrtLqrlfkrvlgltpkey 27 
                 +  +L+r+ ++v   +p+ +
  CTQ28379.1  99 TDAHLRRVGEEVWDRSPANF 118
                 55678888888888888766 PP

  == domain 2  score: 80.0 bits;  conditional E-value: 2e-26
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 la+++g+s+ ++ r+f++ l++ p++y+ + R+ +A  l+ + ++l+++eiAla+GFs++s+Fs+  ++++g+tPs+ r+
  CTQ28379.1 207 LAQQAGLSEFHFARMFRQSLNMAPHQYVMQQRMAKAQNLICH-SALPLTEIALACGFSSPSHFSHRVKAATGLTPSQLRA 285
                 89************************************8875.**********************************997 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   4.3e-05      0.25      13      31 ..     196     214 ..     190     215 .. 0.92
   2 ?    2.1   0.0     0.029   1.8e+02      17      34 ..     249     266 ..     245     268 .. 0.84
   3 ?   -3.2   0.0       1.2   7.4e+03      26      34 ..     274     282 ..     272     284 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.3e-05
                 CTTBSS-BHHHHHHHHTS- CS
    HTH_IclR  13 aeapqeltlselArrtglp 31 
                 a+ +q+ltl++lA+++gl+
  CTQ28379.1 196 AHLDQPLTLADLAQQAGLS 214
                 6789*************97 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.029
                 SS-BHHHHHHHHTS-HHH CS
    HTH_IclR  17 qeltlselArrtglpkSt 34 
                  +l l+e+A ++g + ++
  CTQ28379.1 249 SALPLTEIALACGFSSPS 266
                 6799*******9988765 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.2
                 HHHTS-HHH CS
    HTH_IclR  26 rrtglpkSt 34 
                 ++tgl++S 
  CTQ28379.1 274 AATGLTPSQ 282
                 689999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2124.06
//
Query:       CTQ28380.1  [L=298]
Description: putative transmembrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-26   92.4  40.5    1.1e-15   58.0  15.1    2.1  2  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7  17.4   1.4e-14   2.5e-10       5     136 ..       4     134 ..       1     135 [. 0.91
   2 !   58.0  15.1   6.3e-20   1.1e-15       2     136 ..     149     285 ..     146     286 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.4e-14
        EamA   5 llallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePv 103
                 ll  l++++w+++++++      v      f+rf +a++ +l+i+l++++ +  l  kd l+ ll g+  +++ f++f++a   ++ +  s+i+s++++
  CTQ28380.1   4 LLYALVVVIWGTTWIAIFLQQGPVAAPVSIFWRFAVASVTMLAILLVTRRLR-PLGAKDHLCCLLQGCCVFCFNFWCFYTAAAWINTGLESVIFSIAVL 101
                 67789999*********55544444445567*********************.999999**************************************** PP

        EamA 104 ftlilsvlllgekltlkqllgivlillGvllil 136
                 f +i s+l++++++  + +++++l+l+G+++++
  CTQ28380.1 102 FNAINSFLFFRQQPPGRFWAAAALGLAGIVILF 134
                 ******************************987 PP

  == domain 2  score: 58.0 bits;  conditional E-value: 6.3e-20
        EamA   2 lgillallaalfwaiyfvls.killrkvspltltfvrfliagillliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnaslit 98 
                 +gi l  l++  ++++ ++s ++  r +++lt++ + +l +++++ +iall++ ++ ++++++ + +ll+l+l+g+v+af+++f+++ +++as+a++ t
  CTQ28380.1 149 WGIGLSALGTYGFSLGNMFSiRHQRRGLETLTTNSWAMLYGTLVMGAIALLRGDNFmPEWTVSYLGALLYLALFGSVIAFGAYFTLVGRIGASKAAYST 247
                 7777878888888888888889***************************************************************************** PP

        EamA  99 slePvftlilsvlllgekltlkqllgivlillGvllil 136
                 +l P+++l +s ++ g    +  ++g++lillG l+++
  CTQ28380.1 248 LLFPLVALSISTVYEGYVWHSNAVIGLALILLGNLVMF 285
                 *********************************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2394.72
//
Query:       CTQ28381.1  [L=222]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-55  186.5   0.1    4.6e-55  186.3   0.1    1.0  1  DUF3313   Protein of unknown function (DUF3313)


Domain annotation for each model (and alignments):
>> DUF3313  Protein of unknown function (DUF3313)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.3   0.1   2.6e-59   4.6e-55       1     185 [.      30     213 ..      30     214 .. 0.99

  Alignments for each domain:
  == domain 1  score: 186.3 bits;  conditional E-value: 2.6e-59
     DUF3313   1 kysgflsdYsgLeptsdpdgdkslvyvdpgvdlakydkviiepvvvypkadptkglspadlqelanyfdraLceeLskryelvdspgpgtLrvrlaitg 99 
                 +ysgfl+dYs+L++t++++g++ l+++dp+++ a+yd++++ pv++yp ++pt+++ ++ lq + ny++++L++++s+r +l++++g ++L++r aitg
  CTQ28381.1  30 QYSGFLKDYSSLKETTSASGKPELRWIDPNFNPANYDNIVYHPVTYYPVPKPTTQVGEKALQDILNYTNKELKQAISERKPLATTAGKRSLIFRGAITG 128
                 69************************************************************************************************* PP

     DUF3313 100 vkptnpvlaaasvvlPiglvvsavqkaagertgvGsltveaellDaatgellaaavdkragnklatsarvsslsdakdaidkwakd 185
                 v++++++l++++v+ P++++v+++q+a+g+rt++++l++eae++Da+t+++++++v+k++g++la++++  +++ +k++id++a d
  CTQ28381.1 129 VDSSKEGLQFYEVI-PVAMIVAGTQAATGHRTMDTNLYFEAEVIDASTNKPVIKVVRKGEGKTLANENTPLTVDTLKQVIDDMAVD 213
                 **************.*************************************************88****************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1836.14
//
Query:       CTQ28382.1  [L=198]
Description: putative AdoMet-dependent methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-97  324.0   0.0    2.7e-97  323.8   0.0    1.0  1  TehB             Tellurite resistance protein TehB
    7.9e-13   48.9   0.0    1.1e-12   48.4   0.0    1.2  1  Methyltransf_25  Methyltransferase domain
    5.4e-11   42.6   0.0    6.4e-11   42.4   0.0    1.1  1  Methyltransf_23  Methyltransferase domain
    4.5e-10   40.0   0.0    6.5e-10   39.5   0.0    1.2  1  Methyltransf_11  Methyltransferase domain
    6.6e-10   39.6   0.0    9.7e-10   39.1   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
    1.7e-07   31.1   0.0    2.1e-07   30.9   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    4.8e-06   26.2   0.0    6.2e-06   25.9   0.0    1.2  1  MTS              Methyltransferase small domain
     0.0061   16.2   0.0     0.0084   15.7   0.0    1.2  1  NodS             Nodulation protein S (NodS)
  ------ inclusion threshold ------
      0.011   15.5   0.0       0.03   14.0   0.0    1.6  1  TPMT             Thiopurine S-methyltransferase (TPMT)


Domain annotation for each model (and alignments):
>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.8   0.0  1.4e-100   2.7e-97       3     193 .]       3     193 ..       1     193 [. 0.99

  Alignments for each domain:
  == domain 1  score: 323.8 bits;  conditional E-value: 1.4e-100
                 CCGCCHHHHHHT-----HHHHHHCCCS-S-EEEEES-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG----S-EEEEEE CS
        TehB   3 ikkedyfskkynltathsevveavkivkpgkvldlgcgqgrnslylsllgydvtawdknensiafleeikekenlknistalydineaklderydfils 101
                  ++ dyfs+ky lt+thsev++a+ iv pg++ldlgcg+grnslyl+++g+ vtawdkn +s+++le+i+  e l+n++ta+ d+n++++d +yd+ils
  CTQ28382.1   3 KRDADYFSQKYSLTRTHSEVLHAATIVPPGRALDLGCGNGRNSLYLAANGFAVTAWDKNPMSLNNLESIRAAERLDNLQTAVKDLNSLSFDGEYDLILS 101
                 6899*********************************************************************************************** PP

                 ESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEE--EEEEEEE-TTS-EEEEEEEEEE CS
        TehB 102 tvvlmfleaeripsiienmqectkvggynlivaamstddvpctvpfsftfkegelkeyykdwellkynedvgelhktdengnriklkfatll 193
                 tvv+mfle+++ip +i+nmq+ct +ggynlivaam+t+d+pctv+f+f+fk +el++yy++wellkynedvgelh+td+ngnrikl+fatll
  CTQ28382.1 102 TVVMMFLEPDTIPGLIANMQRCTAAGGYNLIVAAMDTEDYPCTVGFPFAFKPDELRDYYQGWELLKYNEDVGELHRTDANGNRIKLRFATLL 193
                 ******************************************************************************************97 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   5.7e-16   1.1e-12       2      97 .]      35     128 ..      34     128 .. 0.95

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 5.7e-16
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      LdlGcG+Gr++l+la+++    vt+ D ++  l++ ++  ++e+l n++  ++d+++l+f+ g++Dl++s+ ++++l+++ ++ +++++ r++ 
       CTQ28382.1  35 LDLGCGNGRNSLYLAANG--FAVTAWDKNPMSLNNLESIRAAERLdNLQTAVKDLNSLSFD-GEYDLILSTVVMMFLEPDTIPGLIANMQRCTA 125
                      9***************95..*****************999999999*************97.6*******766999*****************9 PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                       gG
       CTQ28382.1 126 AGG 128
                      999 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   3.2e-14   6.4e-11      19     118 ..      27     133 ..       8     181 .. 0.74

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 3.2e-14
  Methyltransf_23  19 klraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaae.....pqgkfdlIvlrevlehvp.d.ppellrqi 105
                      +  ++gr Ld+GcG G+++ +l++ngf vt+ D +p+  + +e+++ a+     +   ++      +g +dlI ++ v+  ++ d  p l++++
       CTQ28382.1  27 TIVPPGRALDLGCGNGRNSLYLAANGFAVTAWDKNPMSLNNLESIRAAERLDNLQTAVKDlnslsFDGEYDLILSTVVMMFLEpDtIPGLIANM 120
                      466899*******************************9999995555555544333333322233677************999547******** PP

  Methyltransf_23 106 atllkpgGyllls 118
                      +++++ gGy l+ 
       CTQ28382.1 121 QRCTAAGGYNLIV 133
                      *********6665 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   3.3e-13   6.5e-10       1      94 [.      35     130 ..      35     132 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 3.3e-13
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvLkpg 91 
                      Ld+GcG+Gr++ +la +g  v++ D ++  l+  ++    e+l +++  v d+ +l f d+ +Dl++s+ v++++  +    +++++ R+   g
       CTQ28382.1  35 LDLGCGNGRNSLYLAANGFAVTAWDKNPMSLNNLESIRAAERLdNLQTAVKDLNSLSF-DGEYDLILSTVVMMFLepDTIPGLIANMQRCTAAG 127
                      8*************************9999977766666666678999999*****99.67**************9989*************** PP

                      EEE CS
  Methyltransf_11  92 Gll 94 
                      G+ 
       CTQ28382.1 128 GYN 130
                      *95 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   4.9e-13   9.7e-10       1      98 [.      35     129 ..      35     130 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 4.9e-13
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnirkl 92 
                      L++GcG+G+++ +l+++  +  +t+ D +p ++ +  e +++ e+++n +  +++l++l+ dg   +Dl+++  v+  l  ++i  +++n+ ++
       CTQ28382.1  35 LDLGCGNGRNSLYLAAN--GFAVTAWDKNPMSL-NNLESIRAAERLDNLQTAVKDLNSLSFDG--EYDLILSTVVMMFLepDTIPGLIANMQRC 123
                      8****************..**************.***********************998887..9**************99999********* PP

  Methyltransf_12  93 LkpgGr 98 
                       + gG+
       CTQ28382.1 124 TAAGGY 129
                      ***995 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0     1e-10   2.1e-07       6     106 ..      33     129 ..      30     175 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1e-10
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkile...e 96 
                      r lDlGCG+G+ ++ la +   +  v+  D ++ +++  +++++   ldn++  + d ++l+  +    +Dlils  v++ + +pd i +   +
       CTQ28382.1  33 RALDLGCGNGRNSLYLAAN---GFAVTAWDKNPMSLNNLESIRAAERLDNLQTAVKDLNSLS--FD-GEYDLILST-VVMMFLEPDTIPGliaN 119
                      679**************54...446*************************************..66.9******96.44444444444333336 PP

  Methyltransf_31  97 iervlkpggi 106
                      ++r    gg+
       CTQ28382.1 120 MQRCTAAGGY 129
                      6666666665 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   3.1e-09   6.2e-06      32     103 ..      31     101 ..      16     138 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.1e-09
                 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEEE CS
         MTS  32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdlivs 103
                  g++lDlGcG+G  ++ la++    +vt+ d++ ++l+  +   +a++l+ +++  +d+ +   ++++dli+s
  CTQ28382.1  31 PGRALDLGCGNGRNSLYLAANGF--AVTAWDKNPMSLNNLESIRAAERLDnLQTAVKDLNSLSFDGEYDLILS 101
                 5789***************9655..5************************9********************97 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.2e-06    0.0084      45     147 ..      32     135 ..       7     143 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.2e-06
        NodS  45 adalevGcaaGalterlapyckrltvvdvveeaiarar..ervkesshiswivsdvqqfstdekfdlivvaevlyyiedvaelraavrnlvsllapdgq 141
                 + al++Gc  G  +  la     +t  d  + +++     +  ++  +++  v+d++ +s d ++dli+ + v+ ++e    + + + n+ +  a++g+
  CTQ28382.1  32 GRALDLGCGNGRNSLYLAANGFAVTAWDKNPMSLNNLEsiRAAERLDNLQTAVKDLNSLSFDGEYDLILSTVVMMFLE-PDTIPGLIANMQRCTAAGGY 129
                 689***********************99988887643210233444569999*********************99996.56799999999998888887 PP

        NodS 142 lvfGsa 147
                  +  +a
  CTQ28382.1 130 NLIVAA 135
                 655555 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.5e-05      0.03      31     188 ..      24     168 ..      11     189 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
                 HT.T-S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHHHTTSGGGGGEEEE--...........-TTT---SS-..EEEEEEESSTTTS CS
        TPMT  31 dalkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffeeanlepkvkelsgvkeysageiellcgdvFtlraeelgkfdliydraalvAl 129
                 +a++  + +r+l  +CG++ +   lA++g  v + +  ++ +++  e     +++++l+ + +        l +  F+      g++dli   ++++ l
  CTQ28382.1  24 HAATIVPPGRALDLGCGNGRNSLYLAANGFAVTAWDKNPMSLNNL-ESIRAAERLDNLQTAVK-------DLNSLSFD------GEYDLILSTVVMMFL 108
                 45566788899999****************************995.44444555555555444.......13333455......779************ PP

                 -GGGHHHHHHHHHHHEEEEEE..EEEEE---S---..-SS----HHHHHHHHGGTEEEEEE CS
        TPMT 130 ppelreryakslaelLkpdgeglLvtldypqaehe..GPPfsvpeaeleallsagfkvael 188
                 +p+  +   +++++   ++g  l+v  ++ +      G Pf+ + +el+ ++ + +++ + 
  CTQ28382.1 109 EPDTIPGLIANMQRCTAAGGYNLIVAAMDTEDYPCtvGFPFAFKPDELRDYYQG-WELLKY 168
                 ********************99999888766554335************99875.455443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1508.42
//
Query:       CTQ28383.1  [L=334]
Description: potassium-tellurite ethidium and proflavin transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-39  136.5  27.4    1.4e-39  136.3  27.4    1.0  1  SLAC1     Voltage-dependent anion channel
  ------ inclusion threshold ------
       0.12   10.8   0.2       0.17   10.3   0.2    1.1  1  FHIPEP    FHIPEP family


Domain annotation for each model (and alignments):
>> SLAC1  Voltage-dependent anion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3  27.4   1.5e-43   1.4e-39       1     323 [.      12     309 ..      12     310 .. 0.87

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 1.5e-43
       SLAC1   1 hftpawFaivMGtgilalllkalp..arglriislilfllalvlfllllvlyllrfilypeavrkelrhpveslflgtfpmglltilnglllvlpgewl 97 
                 +++ ++F++v+Gt +++ ++++ +   +  r i+  l+ la+++++ll+++++ r i++p +v +e+rhpv s f+++fp ++l++ +gl+      w 
  CTQ28383.1  12 NLPAGYFGMVLGTIGMGFAWRYAStlWPVSRSIGDGLVTLAMAMWVLLSMAFISRAIRFPASVLREMRHPVSSSFVSLFPATTLLVAIGLAP-----WC 105
                 6899****************852222356677**************************************************8888766665.....66 PP

       SLAC1  98 atlalvllWi.gvllslltavvvvfllftekeekleeitpawllpvvgllvvallg.allaesqnpslqllgilvvslllwglGlllalvlfvlylyrl 194
                   la+  l++ gv+l+l++a +++  l++ ++  +e++tp ++lp+v++  +++++ ++l           g   ++l+++g G++ +l l   +l+rl
  CTQ28383.1 106 RPLAIG-LFVpGVALQLAYAAWQSGGLWRGNHP-REATTPGLYLPTVANNFISAMAcGAL-----------GFSDAGLVFLGAGVFSWLSLEPAILQRL 191
                 678888.7766**************55554444.89************988888884677...........6899************************ PP

       SLAC1 195 ithklppaelrptlfiplGplgqgalallllgkaapkaaevlkvlalllalflwglglfwllvavlsvls.lpv..rlkfslswWaftFPlgalalati 290
                  + + +p+ lr +l i l+p+ ++++a+l++  +    +  ++++a l    l+g+gl+ ll+    +l+ +p+  r+ f+ s+W+f+F + ala+  +
  CTQ28383.1 192 RSAGELPTPLRTSLGIQLAPALVACSAWLSV--N----GGEADTFAKL----LFGYGLLQLLF----MLRlMPWylRQPFNASFWSFSFGISALATTGL 276
                 ****************************777..3....3334556666....89999999888....444222355777******************** PP

       SLAC1 291 elgkaleseafkvlgtillvllvlvwllvlvgt 323
                 +lg+a + ++f+ l++ l++++ lv+ l+l++t
  CTQ28383.1 277 HLGQARGDGFFHHLAMPLFIFSNLVVGLLLLRT 309
                 ***9999************************99 PP

>> FHIPEP  FHIPEP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   1.9e-05      0.17     190     292 ..      19     123 ..      11     142 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 1.9e-05
                 XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX CS
      FHIPEP 190 GliiGvlqhgmslsealetY.tlLtiGDGLvsqiPaLlisvaagiivtrva.seenlgeeivkqllanpkalliaagvllllalvpgl.pklvflllaa 285
                 G+++G++ +g ++  a + + +  +iGDGLv+   a+ + ++ ++i +r+    +++ +e+ + ++++   l+ a ++l++++l p   p ++ l++ +
  CTQ28383.1  19 GMVLGTIGMGFAWRYASTLWpVSRSIGDGLVTLAMAMWVLLSMAFI-SRAIrFPASVLREMRHPVSSSFVSLFPATTLLVAIGLAPWCrPLAIGLFVPG 116
                 9999999999999999999934579************999999986.776635699****************************985413333344444 PP

                 XXXXXXX CS
      FHIPEP 286 llallay 292
                 +++ lay
  CTQ28383.1 117 VALQLAY 123
                 4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2732.34
//
Query:       CTQ28384.1  [L=326]
Description: putative enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-19   67.2  25.1    4.9e-08   32.5   1.0    7.5  8  B_solenoid_ydck  Beta solenoid repeat from YDCK
    1.8e-07   30.6   2.5        2.7    7.8   0.1    5.7  5  Hexapep          Bacterial transferase hexapeptide (six repea
    7.7e-05   22.9   4.3       0.02   15.2   0.8    3.3  3  Bactofilin       Polymer-forming cytoskeletal
  ------ inclusion threshold ------
      0.053   12.4   1.1          1    8.2   0.3    2.3  3  Fucokinase       L-fucokinase
       0.14   11.9   0.2       0.35   10.6   0.2    1.6  1  DUF2572          Protein of unknown function (DUF2572)


Domain annotation for each model (and alignments):
>> B_solenoid_ydck  Beta solenoid repeat from YDCK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.3   4.8e+03       1       8 [.      72      79 ..      72      81 .. 0.81
   2 ?    3.3   0.2     0.022        81       5      18 .]      94     107 ..      92     107 .. 0.92
   3 !   32.3   0.1   1.6e-11   5.7e-08       1      18 []     107     124 ..     107     124 .. 0.99
   4 !    5.6   0.2    0.0045        16       2      14 ..     153     165 ..     153     168 .. 0.91
   5 !   32.5   1.0   1.4e-11   4.9e-08       1      18 []     169     186 ..     169     186 .. 0.98
   6 !    7.4   0.1    0.0011       4.1       1      11 [.     208     218 ..     208     220 .. 0.87
   7 ?   -0.1   0.0      0.27   9.9e+02      11      18 .]     237     244 ..     236     244 .. 0.88
   8 ?   -1.8   0.1      0.92   3.3e+03       5      11 ..     279     285 ..     277     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.3
  B_solenoid_ydck  1 AQIyGnAt 8 
                     A+I ++A+
       CTQ28384.1 72 ARIRDDAR 79
                     89989998 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.022
  B_solenoid_ydck   5 GnAtVqhsfVeHra 18 
                      G A ++ s++ H+a
       CTQ28384.1  94 GRACIHSSQISHHA 107
                      8999********98 PP

  == domain 3  score: 32.3 bits;  conditional E-value: 1.6e-11
  B_solenoid_ydck   1 AQIyGnAtVqhsfVeHra 18 
                      AQI++n+tV++s+V++++
       CTQ28384.1 107 AQISDNVTVMQSQVRGYC 124
                      9****************9 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0045
  B_solenoid_ydck   2 QIyGnAtVqhsfV 14 
                      QIy  AtV +s++
       CTQ28384.1 153 QIYQRATVSASRI 165
                      9**********99 PP

  == domain 5  score: 32.5 bits;  conditional E-value: 1.4e-11
  B_solenoid_ydck   1 AQIyGnAtVqhsfVeHra 18 
                      AQIyG+A+V h+fVeHra
       CTQ28384.1 169 AQIYGDAFVEHAFVEHRA 186
                      9****************8 PP

  == domain 6  score: 7.4 bits;  conditional E-value: 0.0011
  B_solenoid_ydck   1 AQIyGnAtVqh 11 
                      A++yG+A+ ++
       CTQ28384.1 208 ARVYGHARLIA 218
                      9******9887 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 0.27
  B_solenoid_ydck  11 hsfVeHra 18 
                      ++++e+ +
       CTQ28384.1 237 NAVIEGNC 244
                      79****88 PP

  == domain 8  score: -1.8 bits;  conditional E-value: 0.92
  B_solenoid_ydck   5 GnAtVqh 11 
                      G+++V h
       CTQ28384.1 279 GDVIVEH 285
                      8999976 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1   0.00079       2.8       2      30 ..      72     100 ..      65     101 .. 0.68
   2 ?    1.6   0.0      0.07   2.5e+02       1      33 [.     106     137 ..     106     140 .. 0.78
   3 ?    1.9   0.0     0.057     2e+02      18      33 ..     200     215 ..     198     218 .. 0.67
   4 !    5.3   0.0    0.0048        17       1      18 [.     237     254 ..     231     258 .. 0.65
   5 !    7.8   0.1   0.00076       2.7       6      30 ..     267     291 ..     263     297 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00079
                 EEEETTEEE-TTEEEETTEEE-TTEEEET CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIga 30 
                 ++I +++ +  f+v+ + ++IG +++I++
  CTQ28384.1  72 ARIRDDARLTGFCVVSHEATIGGRACIHS 100
                 34444444445999999999998888876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.07
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvv 33 
                 +++I +nv+++  ++++g + + d +++ +++ 
  CTQ28384.1 106 HAQISDNVTVM-QSQVRGYCRLADEARLLPHCQ 137
                 57899999999.888888888888877777665 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.057
                 TTEEE-TTEEEETTEE CS
     Hexapep  18 gnVkIGdnvkIgagvv 33 
                 ++V + dn+++  +++
  CTQ28384.1 200 NDVWVCDNARVYGHAR 215
                 6777777777766665 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0048
                 TEEEETTEEE-TTEEEET CS
     Hexapep   1 stvIGsnvlIgpfavigg 18 
                 ++vI+ n+l+ + a++gg
  CTQ28384.1 237 NAVIEGNCLLKHRAMVGG 254
                 456666666666666666 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.00076
                 TTEEE-TTEEEETTEEE-TTEEEET CS
     Hexapep   6 snvlIgpfaviggnVkIGdnvkIga 30 
                 ++vlI   +vi g+V++   v I  
  CTQ28384.1 267 DDVLIQGRTVITGDVIVEHQVSIND 291
                 7899999999999999988888865 PP

>> Bactofilin  Polymer-forming cytoskeletal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.029     1e+02       7      56 ..      78     122 ..      65     140 .. 0.57
   2 ?    3.8   0.0      0.02        72      32      79 ..     149     197 ..     136     215 .. 0.80
   3 !   15.2   0.8   5.5e-06      0.02      22      95 ..     218     297 ..     209     299 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.029
  Bactofilin   7 tkikGelevegdlridGkveGdieakgklvvgeggkvegnikaeevvvaG 56 
                 ++++G   v+++  i G  +  i+++   +++++++++ n+++ + +v+G
  CTQ28384.1  78 ARLTGFCVVSHEATIGG--RACIHSS---QISHHAQISDNVTVMQSQVRG 122
                 33333333333444433..3334333...566666666666665555555 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.02
  Bactofilin  32 kgklvvgeggkvegnikaeevvvaGt.vkGnveaeekvelkktakveGd 79 
                 ++ l++ ++++v+++   +++++ G  +     +e++ e+ ++a++eG+
  CTQ28384.1 149 DKVLQIYQRATVSASRILHQAQIYGDaFVEHAFVEHRAEVFDQARLEGN 197
                 5678888999999998889999999876778888889999999999997 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 5.5e-06
  Bactofilin  22 dGkveGdi.eakgklvvgeggkvegnika.eevvvaGtvk...GnveaeekvelkktakveGdika.ksleieegavfeG 95 
                 +G+ e  i + + + +v+e++++egn    +++ v G+ +   G +  ++ v +++ ++++Gd+ + ++++i++++++ +
  CTQ28384.1 218 AGRGEDAIpTVRYSSQVAENAVIEGNCLLkHRAMVGGEAQlrgGPILLDDDVLIQGRTVITGDVIVeHQVSINDEVQIAA 297
                 55556666555677789999999999777355999999888889999999999999999999999866788998888765 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.3   0.00028         1     269     313 ..      91     141 ..      68     181 .. 0.64
   2 ?   -0.8   0.0      0.16   5.6e+02     270     304 ..     154     188 ..     130     198 .. 0.75
   3 ?    1.8   0.0     0.025        88     293     353 ..     229     292 ..     216     305 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00028
  Fucokinase 269 kkkesavvinSvlessvsvgegsvie......hsslkgnvsigsnsivsgl 313
                 ++  +a++++S+++++++++++  ++      +++l ++ +   ++ v   
  CTQ28384.1  91 TIGGRACIHSSQISHHAQISDNVTVMqsqvrgYCRLADEARLLPHCQVIAA 141
                 446789999999999999999998884555555555555555555555443 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.16
  Fucokinase 270 kkesavvinSvlessvsvgegsviehsslkgnvsi 304
                 + ++a+v  S + +++++  ++ +eh  ++ + ++
  CTQ28384.1 154 IYQRATVSASRILHQAQIYGDAFVEHAFVEHRAEV 188
                 36788999999999999999999999888776666 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.025
  Fucokinase 293 iehsslkgnvsigsnsivsglelessee.....slelpddtilqtlslklskekeyvtvvfGieDd 353
                  ++s++ +n  i+ n+++ +  +  +e+      + l dd+++q+  + +++    v   ++i+D+
  CTQ28384.1 229 RYSSQVAENAVIEGNCLLKHRAMVGGEAqlrggPILLDDDVLIQGRTVITGDV--IVEHQVSINDE 292
                 44555556666666666655555555445555555566666666666655553..44445555554 PP

>> DUF2572  Protein of unknown function (DUF2572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   9.9e-05      0.35     162     194 ..     265     297 ..     260     305 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.9e-05
     DUF2572 162 AegdLkieGkGkisGavitegkltleekvkisy 194
                  ++d+ i+G+  i+G vi e++++++++v+i+ 
  CTQ28384.1 265 LDDDVLIQGRTVITGDVIVEHQVSINDEVQIAA 297
                 578999************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2360.70
//
Query:       CTQ28385.1  [L=192]
Description: ribosomal-protein-L7/L12-serine acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-16   61.5   0.0    1.7e-16   61.2   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    1.3e-09   38.3   0.0    1.7e-09   37.9   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.8e-08   34.7   0.1    2.5e-08   34.2   0.1    1.2  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
     0.0038   16.9   0.1     0.0075   16.0   0.1    1.6  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.081   12.9   0.1       0.12   12.4   0.1    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   4.6e-20   1.7e-16       2     137 ..      18     157 ..      17     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 4.6e-20
  Acetyltransf_3   2 LlLrplteeDlealfe.lrsdpe.vmrylpe...pltleeaeewlera..waeeseeegyg..waivlkdtgviGsvglrdleeedeeaelgyml 87 
                     L+L+ + e+ + +l++ ++++++ +++ l++    ++++e+++ ++    +++    ++y   ++++l ++  +G+ +++++e+++++a +gy++
      CTQ28385.1  18 LTLVAIDERYVSDLHQlVVKNQRwLQQSLSWpaeVRSEDETRRHVQGNvmLHQ----RDYAkmFLLFLDKQ-LVGVLSFNQIEPQNKTAYIGYWI 107
                     78888888888999984466666455534443359999999999997754444....55554588877777.8********************** PP

  Acetyltransf_3  88 apsfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     +++++g+G+ +  ++a+++++ +   ++r+v+++   N++S +v+ + Gf
      CTQ28385.1 108 DEEHQGQGLLSRSLQAFIRHYAASGLVRRFVIKCRVANTRSNQVALRNGF 157
                     ******************999988889**********************9 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   4.7e-13   1.7e-09       7     117 .]      41     157 ..      31     157 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 4.7e-13
                     HHHHHTHHHHHHHHHHH.HHHH......HHSTTC.EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTT CS
  Acetyltransf_1   7 llvesffppnedaseee.fees......fsleae.gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareeg 93 
                     +l+ s  +p e +se+e +         +++ +    ++   d +l+G +s+++i +  +++ayi ++++++e++g+Gl s+ l+a +++    g
      CTQ28385.1  41 WLQQSLSWPAEVRSEDEtR-RHvqgnvmLHQRDYaKMFLLFLDKQLVGVLSFNQIEP-QNKTAYI-GYWIDEEHQGQGLLSRSLQAFIRHYAASG 132
                     5555666677777777741.3334555533334456777889999**********99.4555555.***************************** PP

                     E.SEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  94 i.kkivlaveedndaairlYeklGF 117
                     + ++ v+ +++ n+++  +  + GF
      CTQ28385.1 133 LvRRFVIKCRVANTRSNQVALRNGF 157
                     *9**999*********999888887 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1     7e-12   2.5e-08      23     153 ..      44     176 ..      24     178 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 7e-12
  Acetyltransf_4  23 taitfeyevssveefekfleal.d...sekeyvflvaesdrivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnien 113
                     + + + +ev s +e+ +  +        ++  +fl + + ++vG +  +q+++  +++ a + ++++e+ + +  l r l +++  +++   +++
      CTQ28385.1  44 QSLSWPAEVRSEDETRRHVQGNvMlhqRDYAKMFLLFLDKQLVGVLSFNQIEP--QNKTAYIGYWIDEEHQGQGLLSRSLQAFIRHYAASGLVRR 136
                     45556666666666666665543233357788999999***************..***********9888888889999**************** PP

  Acetyltransf_4 114 llaeiaspnensiqfhkalGFelvgifkkcikkngrwiDm 153
                     ++++  ++n+ s q++ + GF l+g ++++ + ng + D+
      CTQ28385.1 137 FVIKCRVANTRSNQVALRNGFVLEGCLRQAEYLNGSYDDQ 176
                     ***********************************99886 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   2.1e-06    0.0075      88     141 ..     108     161 ..      38     164 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.1e-06
                     SHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  88 eaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                     ++e+ g+gl ++ l+a+++   a+  +rr v+  +v N+r+ ++  + Gf+ e+
      CTQ28385.1 108 DEEHQGQGLLSRSLQAFIRHYAASGLVRRFVIKCRVANTRSNQVALRNGFVLEG 161
                     56788*********************************************9775 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.2e-05      0.12      28      82 ..      71     131 ..      50     167 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.2e-05
  Acetyltransf_10  28 egealllvaeeggkivGvi...elrdgs.....hisllfVdpeyrgqGi.gkaLleaveeeaek 82 
                         a++++++ ++++vGv+   ++   +           +d+e++gqG+ +++L  +++++a  
       CTQ28385.1  71 RDYAKMFLLFLDKQLVGVLsfnQI---EpqnktAYIGYWIDEEHQGQGLlSRSLQAFIRHYAAS 131
                      55678999***********55544...223446777889*********6488888888888744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1504.13
//
Query:       CTQ28386.1  [L=614]
Description: glucan biosynthesis protein, periplasmic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.4e-181  603.3   0.0     4e-181  603.1   0.0    1.0  1  MdoG           Periplasmic glucan biosynthesis protein, MdoG
    0.00025   20.7   2.1    0.00053   19.7   2.1    1.6  1  TAT_signal     TAT (twin-arginine translocation) pathway sign
  ------ inclusion threshold ------
       0.17   12.1   0.2        1.9    8.7   0.0    2.3  2  EpoR_lig-bind  Erythropoietin receptor, ligand binding


Domain annotation for each model (and alignments):
>> MdoG  Periplasmic glucan biosynthesis protein, MdoG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  603.1   0.0  6.7e-185    4e-181       1     477 []     108     597 ..     108     597 .. 0.95

  Alignments for each domain:
  == domain 1  score: 603.1 bits;  conditional E-value: 6.7e-185
                 --HHHHHHHHHHHHTS-----------------HHHHTT-EE-GGG-BT.TTSSSS-EEEEEE-BTTB-S-BEEEEE..-SS-EEE----GGGEE-TTS CS
        MdoG   1 Fsfetvkekaralaakpyaapeeelpealakldydqyrkirfrpekalw.keeklpfevqffhlgllfkepvkinev..edgkareiaydpslFdygke 96 
                 F+++ +++ a++la++p+  ++++lp +la+l+ ++y++i+++ +++lw + e++++++qffh g+ f+++v+++ +  ++++arei+++p+lF+y+++
  CTQ28386.1 108 FDYAVLQAMAHDLARQPWGGAPRDLPPTLANLTPQAYNSIQYDANHSLWnNIEERKLDIQFFHVGMGFRRRVRMFSLdaSTQQAREIHFRPELFKYNDA 206
                 8999*********************************************888999*********************9655688*************999 PP

                 ...---TTTSTT--EEEEEEEEECCETTEEEEEEEEESTTEEEE--TT-----EEES-EESTT-TT--B--EEEEEEEE---TT---EEEEEEEEETTE CS
        MdoG  97 ...kkakelpkdlgfaGfrlhaplnkeevkdellvflGASYFRavgkgqqyGlsARglaidtaepkgEeFPaFtefwlerpakeaksltvyAlLdspsv 192
                    + + e ++dlgfaGfr+ ++ +   +++++++flGASYFRav+++ qyGlsARgla+dt ++++EeFP+Ft+fw+e+ + +a+ +tvyAlLdsps+
  CTQ28386.1 207 gvdTRQLEGQSDLGFAGFRVFKAPE--LARRDIVAFLGASYFRAVDSTYQYGLSARGLAVDTFTDTPEEFPDFTSFWFETVKGDATVFTVYALLDSPSI 303
                 876667778889*********7666..479********************************************************************* PP

                 EEEEEEEEE-.SSSEEEEEEEEEEESS--S-EEEEEEEE-EEEBTTB--SS--S-S-EES--EEEEE-TTS-EEEEE----SS-EEEEEEEES--EEEE CS
        MdoG 193 tGayrfvirp.geetvvdveatlflRkdveklGiapltSmflfgendrrkaddfrpevhDsdgLliatgngewiwRpLnnpkklqvssfadenpkGFGL 290
                 tGay+f+i++ ++++++dve +l++Rkd+++lGiap+tSmf +g+n+rr++d ++p++hDsd L+++ gngew++RpLnnp+klq+++f+d+np+GFGL
  CTQ28386.1 304 TGAYKFTIHCqDTQVIMDVENHLYARKDIKQLGIAPMTSMFSCGNNERRMCDTIHPQIHDSDRLSMWLGNGEWVCRPLNNPQKLQFNAFQDKNPRGFGL 402
                 *********9558899*********************************************************************************** PP

                 E-----GGGT--TTT-GGG--EEEEEESS---EEEEEEEE---SSTTS--EEEEEEESS---TT-EEEEEEEEEEES-GGGGT.TSBEEEEEEEEES.. CS
        MdoG 291 lqrdrefesYqDlearYekRPslwvepkgdwgkGaveLveiptddEtnDNivafWvpeeplkageelefaYrltwgeeepkaeeplarvvatrvgkg.. 387
                 lq dr+f++YqD+  +Y+kRPslwvep+++wgkGav+L+eipt+ Et DNiv+fW+pe+++kag+el+f+Yrl+w++++p+ ++plarv atr+g+g  
  CTQ28386.1 403 LQLDRDFSHYQDVMGWYNKRPSLWVEPRNQWGKGAVSLMEIPTTGETLDNIVCFWQPEKAVKAGDELDFRYRLYWSAQPPV-STPLARVLATRTGMGgf 500
                 ******************************************************************************998.889***********977 PP

                 .STT...-TT-...-SEEEEEEEEE-TTGGGS-T---EEEEEE-TTEEEEEEEEEETTTTEEEEEEEEEE.S-T.S-EEEEEEEEETTCEEEEEEEEEE CS
        MdoG 388 .eek...kekr...keskkfvvdfegealekleeeeveaevtasageivessvernpetkgwrlvfdlep.ede.epvelravLkkgekalsetwlyqw 477
                  e++   +  +   k +++f++df g++l++++++ +e+++t s+ge ++ ++ +++  +g+r+ fd+ p +d+ +pve+r++L+ +++a+setwlyq+
  CTQ28386.1 501 pEGWapgE--HypdKWARRFAIDFVGGDLKAAAPRGIEPVITLSSGEAKQIEILYVEPFDGYRILFDWYPtTDStDPVEMRLFLRCQGEAISETWLYQY 597
                 43336542..33456677***********9999989**********************************6443699********************97 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   2.1   8.8e-08   0.00053       2      25 ..      64      87 ..      63      88 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 8.8e-08
  TAT_signal  2 lSRRdFLKgsAAaaAAaalggcaa 25
                ++RR FLK s A+aA  ++ g+a+
  CTQ28386.1 64 MNRRRFLKSSMAVAAVCGTSGVAS 87
                9*******************9987 PP

>> EpoR_lig-bind  Erythropoietin receptor, ligand binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.11   6.6e+02      19      37 ..     272     290 ..     267     327 .. 0.74
   2 ?    8.7   0.0   0.00032       1.9      19      46 ..     448     475 ..     442     484 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.11
                    SSSS-EEEEEEEE-SST-T CS
  EpoR_lig-bind  19 eekedftCfweeeeekals 37 
                    ee+ dft fw e  +++ +
     CTQ28386.1 272 EEFPDFTSFWFETVKGDAT 290
                    5788******888777643 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00032
                    SSSS-EEEEEEEE-SST-TGGEEEEEEE CS
  EpoR_lig-bind  19 eekedftCfweeeeekalstdysllYal 46 
                    e++ +++Cfw++e++ + + + ++ Y+l
     CTQ28386.1 448 ETLDNIVCFWQPEKAVKAGDELDFRYRL 475
                    567889***********99999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4564.37
//
Query:       CTQ28387.1  [L=362]
Description: Aryl-alcohol dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-23   83.5   3.1    1.9e-23   82.9   3.1    1.3  1  ADH_zinc_N       Zinc-binding dehydrogenase
    2.3e-23   82.1   0.5    4.3e-23   81.3   0.5    1.5  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    1.5e-10   40.9   1.1    2.2e-10   40.4   1.1    1.2  1  Glu_dehyd_C      Glucose dehydrogenase C-terminus
    4.5e-06   27.7   0.2    8.6e-06   26.8   0.2    1.5  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.036   13.3   5.0      0.064   12.6   5.0    1.4  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
      0.063   12.8   0.5       0.14   11.7   0.5    1.6  1  MTS              Methyltransferase small domain
       0.12   13.1   0.1       0.38   11.5   0.1    1.9  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   3.1   7.5e-27   1.9e-23       1     116 [.     195     310 ..     195     324 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 7.5e-27
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeefd 98 
                 +vGl a+++Ak  G+ ++iavd+ +++l+la +lGa++ in ke d v+ ik++t g+g+++++e++G+ a + +a+ ++kp G++++vG+ +g+ +++
  CTQ28387.1 195 AVGLSAIMAAKLTGCsQIIAVDIHASRLALAGELGATHQINGKEQDAVAVIKQIT-GKGAHYAVETTGVSAIVLQAVHAVKPLGTVAIVGF-TGDITLN 291
                 69****************************************887**********.88********************************6.5555699 PP

                 HHH.HHHTT-EEEEE-SSC CS
  ADH_zinc_N  99 lrn.lllkeksilGsllgs 116
                 ++n l+++ ks++G++ g+
  CTQ28387.1 292 VQNdLMAEGKSLVGVIEGD 310
                 999788********99887 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.5   1.7e-26   4.3e-23       2      91 ..      28     117 ..      27     153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 1.7e-26
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTS...S CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvs...l 91 
                 +e+l+k+ a+g+C++D  + ++     v++p ilGHE +G+v++vg++v++++vGd+Vv+    +c +C++C ++++++Ce+ ++l+++    
  CTQ28387.1  28 DEILVKIVATGVCHTDAVMRDN--PGVVPMPAILGHEGAGIVASVGEAVSGIRVGDHVVL-SYAACHHCENCLSNHPSACEDFNTLNFGgrrE 117
                 89***************98886..89**********************************.7789***************7777776654442 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   1.1   8.7e-14   2.2e-10      32     210 ..     186     360 ..     179     362 .] 0.81

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 8.7e-14
  Glu_dehyd_C  32 esalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatY.vdsre.tpvdeipeas.eemdlvvEaTGsakhafeaiealapnGv 126
                  es +v G G++GL a+++ ++  +g +++  ++ +     ++ l  elGat  ++ +e + v  i +++ +   + vE+TG ++ +++a++a++p G 
   CTQ28387.1 186 ESLVVFGCGAVGLSAIMAAKL--TGCSQIIAVDIH---ASRLALAGELGATHqINGKEqDAVAVIKQITgKGAHYAVETTGVSAIVLQAVHAVKPLGT 278
                  6889*********99766665..789988887764...558899*******84454441567777776526789************************ PP

  Glu_dehyd_C 127 aaLlGvpedsevevdggelhrelvleNkalvGsvN..anrrhfeaavdtLaalpeslldelvtkvvdldeleeAfeddd..etiKtvv 210
                  +a++G + d +++v     +++l+ e k lvG +   a  + f   + +L +  +  +d+l++ +++l+++++Af+d+   + iK vv
   CTQ28387.1 279 VAIVGFTGDITLNV-----QNDLMAEGKSLVGVIEgdAVPALFIPLLVQLYKQGKFPIDKLIA-RYPLADINQAFADSAsgKVIKPVV 360
                  *********98765.....67888899******972245678999999999999999*****7.69*********9876336788776 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.2   3.4e-09   8.6e-06       1     127 [.     228     355 ..     228     361 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.4e-09
                   TT-SEEEETTSTTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyrtedfe...aatggegvDvvldtvggealleaslkvlpggGrlvsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadileel 93 
                   lGA++ i+ +++d++   +++ g+g  ++++t+g  a++ ++++++++ G++  +g      + +l ++++    + +++ +++  a ++a  +  l
    CTQ28387.1 228 LGATHQINGKEQDAVaviKQITGKGAHYAVETTGVSAIVLQAVHAVKPLGTVAIVGfT---GDITLNVQNDLMAEGKSLVGVIEGDA-VPALFIPLL 320
                   8*********666666**77779***********888889999999777***888843...33333333334445555555554444.5999999** PP

                   HHHHHHHH..----EEEEEEGGGHHHHHHHHHSS-- CS
  ADH_zinc_N_2  94 aalieeGk..lrpvvdrvfpleeaaeAhrylesgra 127
                   ++l+++Gk  +   +  ++pl+++++A+++ +sg++
    CTQ28387.1 321 VQLYKQGKfpIDKLIA-RYPLADINQAFADSASGKV 355
                   *******955555666.6***************986 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   5.0   2.5e-05     0.064      13      82 ..     170     241 ..     168     283 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.5e-05
                  CTSEEETTCEETCB---EEEEESTSHHHHHHHHHHHHTT.-EEEEEESSHHHHHHHHHTTTCECEE..HCHHH CS
  AlaDh_PNT_C  13 fggkgtlaGgvpgvepakvlviGgGvaGlqAiatakglg.akVtvlDvrparleqleslgakfvev..lksqe 82 
                  ++g+gt++ +++ v     +v+G G +Gl+Ai +ak  g  ++ ++D+ ++rl    +lga+  ++  +++++
   CTQ28387.1 170 QTGSGTVLNRLKPVVGESLVVFGCGAVGLSAIMAAKLTGcSQIIAVDIHASRLALAGELGAT-HQIngKEQDA 241
                  68999999999999999*******************99945899********9999998876.3331133333 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.5   5.5e-05      0.14      17      81 ..     170     235 ..     167     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.5e-05
                 -HHHHHHHHHCHCCTCSEEEEET-TTSHHHH.HHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC CS
         MTS  17 DkGsklLletlpkelsgkvlDlGcGaGvlga.alakespeaevtlvdvdarAlesakenleankle 81 
                  +Gs   l+ l+    ++++ +GcGa  l+a ++ak +   ++ +vd++a  l++a e  ++++++
  CTQ28387.1 170 QTGSGTVLNRLKPVVGESLVVFGCGAVGLSAiMAAKLTGCSQIIAVDIHASRLALAGELGATHQIN 235
                 67999999****999999*******86565505556666666*********999998877777766 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00015      0.38       4      48 ..     191     234 ..     189     278 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
                      ET-TTSHHHHHHHCTS.TSSEEEEEESSHHHHHHHHHHHHHTTTTE CS
  Methyltransf_25   4 lGcGtGrltlalakrl.gkakvtgvDiseemleaareraeeeglnv 48 
                      +GcG   l++ +a++l g +++++vDi ++ l+ a e  + ++  +
       CTQ28387.1 191 FGCGAVGLSAIMAAKLtGCSQIIAVDIHASRLALAGELGATHQ--I 234
                      69**96666666666659***************9998775543..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2600.54
//
Query:       CTQ28388.1  [L=501]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.9e-102  343.2   0.0    1.3e-88  298.1   0.0    2.0  2  COesterase     Carboxylesterase family
    1.2e-10   41.6   0.9    1.9e-09   37.7   0.9    2.5  2  Abhydrolase_3  alpha/beta hydrolase fold
     0.0023   17.5   0.0     0.0045   16.5   0.0    1.4  1  Peptidase_S9   Prolyl oligopeptidase family
  ------ inclusion threshold ------
       0.08   11.8   0.1       0.68    8.7   0.1    1.9  1  Say1_Mug180    Steryl acetyl hydrolase
       0.13   11.0   0.2       0.19   10.4   0.2    1.1  1  HgmA           homogentisate 1,2-dioxygenase


Domain annotation for each model (and alignments):
>> COesterase  Carboxylesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.1   0.0   3.6e-92   1.3e-88       3     336 ..       7     328 ..       5     340 .. 0.90
   2 !   43.3   0.0   6.4e-15   2.3e-11     383     499 ..     353     477 ..     347     490 .. 0.85

  Alignments for each domain:
  == domain 1  score: 298.1 bits;  conditional E-value: 3.6e-92
                 SEEEETTEEEEEEEEEESTCSEEEEEEEEESSB---GGGTTS--BE----SSEEECBS---BESEECSSSSSCGHHCHHHBES---EEEEEEESSSSST CS
  COesterase   3 pvvetslGkvrGkrvklksekevdaFlGiPYAepPvgelRFkkPepaepwtgvrdAtkfspaCpqnaeksekeekeleawvsEDCLyLnvytPkekkea 101
                 p  +t++G++ G   +      ++ ++GiPYA+pPvg+lR+++P+pa +w+gvr A++fs+a +q+++  ++   + +   sEDCLyLnv++P+   +a
  CTQ28388.1   7 PLAKTRQGTLAGSAEQ-----GIHIWRGIPYAAPPVGPLRWRAPQPAARWQGVRPAETFSAASWQDIDYCRELGGGDPGAFSEDCLYLNVWAPA---SA 97 
                 6789999*****9999.....9***********************************************99999999999*************6...45 PP

                 TSSEEEEEEE--STTTS-BGCG..S-THHHHHHHTSEEEEE----HHHHH-B-.....SSTTSBS-HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEET CS
  COesterase 102 kkklPVlVwihGggfqtgsase..ydgsaLaaegnvivVtinYRlGvlGFlst.....gdeeapGNvGllDqvlALrWVkenIasFGGdpervtlfGes 193
                  + lPV+Vw+hGggf++g +s   ydg+aLa++ +v+vVt+nYRlG lGF++      +  e   N++llDq++AL+WV+enI++FGGd  +vtlfGes
  CTQ28388.1  98 AQPLPVMVWLHGGGFTIGAGSLppYDGKALASR-DVVVVTVNYRLGHLGFFAHpaleeEAGERLYNFALLDQIAALQWVQENIHAFGGDAANVTLFGES 195
                 7778*****************99**********.******************9764322244456********************************** PP

                 HHHHHHHHHHHSGGGTTSBSEEEEES--TTSTTTSBSHHHHHHHHHHHHTTS-CSSHHHHHHHHHCS-HHHHHHCCGGSSSSSSTTC-SSS-B--SSSS CS
  COesterase 194 AGaasvsllllsplsrglfkraIlqSGsalspwaiqkkarkrakklakkvgckassskelveclrsksaeelldaqekaleasssklvsfaPvvdgdfl 292
                 AGa sv  l++sp ++glf++aI+qSG  l p   ++ka+++ + la++++ ++ s++     lr  +ae +l+ +          ++  aP+ ++++l
  CTQ28388.1 196 AGARSVLSLMASPKAKGLFHKAIIQSGYTL-PDLPREKALEKGRLLAEHFALPQGSAE----ELRAIPAEAFLSLTAP-------LNTGPAPIAGDAVL 282
                 ***************************655.6678888**************877766....69***********987.......78899999****** PP

                 SS-HHHHHHCGC..CSEEEEEEETTTTHHHHCCHSTTTSSSSHHHH CS
  COesterase 293 pekPeellkseg..kvplliGvnkdegllflaylldkeksvkkkee 336
                 p+  +e++      ++p++iG n+de++ ++ + +d   +++k ++
  CTQ28388.1 283 PQPMLETFFAGRqhPIPVMIGSNSDEASVMAVFGVDIAGQIQKLRR 328
                 *6444555543369******************99998877776655 PP

  == domain 2  score: 43.3 bits;  conditional E-value: 6.4e-15
                 HHHHHHHTHHHHHHHHHHHHHTT-SEEEEEEE--STTSSSTTTGSSBTTTTHHHHTTGGGTSGCS..S-HH.HHHHHHHHHHHHHHHHHHSSTTS..TT CS
  COesterase 383 elltdvlfkapvlrtaklhasrgspvYlYsfdyrnssskkpkwmgvvhgdeleyvfglpllekee..ftke.deklsrkmmtywtnFaktgnPnk..ee 476
                 e++ d+ f++    ++++ ++ g+p++ Y fdy ++++++    g+ hg+e++yvf++  l++    + +e d  +++++ +yw++Fa+    ++  ++
  CTQ28388.1 353 EVCRDMAFTTLGYVVMQAQQRVGQPCWRYWFDYVAEAEHDAYPHGAWHGNEVPYVFDNLRLTDPVrqYASEaDLAFAAQVADYWAQFARLASGEQtlSG 451
                 57789999999999999999********************7779**************99987767866666****************966555555** PP

                 SS----B.TTTBEEEEESSSSS...E CS
  COesterase 477 eekWpkytkeeekylkinlkpk...r 499
                  ++Wp++   ++++l+i+l+++   +
  CTQ28388.1 452 AVRWPACLRGRDRLLRIGLHKRggfK 477
                 *****************999864444 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.9   5.2e-13   1.9e-09       1      95 [.     104     211 ..     104     257 .. 0.82
   2 ?   -2.9   0.0       1.4     5e+03      92     118 ..     326     352 ..     320     394 .. 0.52

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 5.2e-13
                    EEEE--STTTS--TTTTHHHHHHHHHHHTSEEEEEE---..............TTTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakelgavvvsvdYrl..............APehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGG 82 
                    +v++HGGGf++g  + +    + la++ ++vvv v+Yrl              A e  +  a+ d +aal+w++e+ +++g d+++++l+G+SaG+
     CTQ28388.1 104 MVWLHGGGFTIGAGSLPPYDGKALASR-DVVVVTVNYRLghlgffahpaleeeAGERLYNFALLDQIAALQWVQENIHAFGGDAANVTLFGESAGA 198
                    79**********999998888888875.9*********97777777777777788999******************99*****************9 PP

                    HHHHHHHHHHHHT CS
  Abhydrolase_3  83 nlaaavalrarde 95 
                      ++ ++   +++
     CTQ28388.1 199 RSVLSLMASPKAK 211
                    8666665554444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.4
                    HHHTT---EEEEEEESE-SST.SSTTSH CS
  Abhydrolase_3  92 ardegepkvagqvliyPvtdl.ertese 118
                    +r+e ++++  + l+yP+++  e+  + 
     CTQ28388.1 326 LRRERRLGLGLIKLLYPGVKGdEAL-GR 352
                    5555566667777777765442222.22 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-06    0.0045       9      98 ..     126     223 ..     122     227 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-06
                   HHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHH....HHHHHHHHHHHTT...S--GGGEEEEEETHHHHHHHHHHH..H-GGG-SEEEEES CS
  Peptidase_S9   9 lladrGyvvvvanirGsggyGeafhdagkrklgqnefd....Dfiaaaealakeg...yvdserlaitGgSyGGyltgaaln..qrpdlFkaavaev 96 
                    la+r++vvv +n+r ++  G   h a++++ g++ ++    D+iaa++++ ++      d+ ++ ++G S+G   ++ +++  +++ lF+ a+++ 
    CTQ28388.1 126 ALASRDVVVVTVNYRLGH-LGFFAHPALEEEAGERLYNfallDQIAALQWVQENIhafGGDAANVTLFGESAGARSVLSLMAspKAKGLFHKAIIQS 221
                   588************876.99999999999999987766666*********7776432569************987777776669999*****9999 PP

                   E- CS
  Peptidase_S9  97 pv 98 
                   + 
    CTQ28388.1 222 GY 223
                   86 PP

>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00019      0.68     123     215 ..     102     207 ..      84     221 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00019
  Say1_Mug180 123 pvllylHGGgfalk......lipvtlvfLsnlrklfp.dm.ailvsDYtvtaakdqskkYplqvleslavydylvksk.gf....knvvvlGdSaGGn 207
                  pv+++lHGGgf ++      ++   l     +  + + ++  +     + ++ +     Y   +l+ +a  +++ + + +f     nv+++G+SaG  
   CTQ28388.1 102 PVMVWLHGGGFTIGagslppYDGKALASRDVVVVTVNyRLgHLGFFAHPALEEEAGERLYNFALLDQIAALQWVQENIhAFggdaANVTLFGESAGAR 199
                  677777777776642221112222332222222222222222223344555556666778888888888888887765222223379*********** PP

  Say1_Mug180 208 lvLslllk 215
                   vLsl+  
   CTQ28388.1 200 SVLSLMAS 207
                  ****9865 PP

>> HgmA  homogentisate 1,2-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   5.2e-05      0.19     248     273 ..     385     410 ..     369     418 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.2e-05
                 EEEEEEE-S--EEEEEES---EEEEG CS
        HgmA 248 faakldhspldvvaWhGnyvPykydl 273
                 ++a+ +h ++   aWhGn vPy +d 
  CTQ28388.1 385 YVAEAEHDAYPHGAWHGNEVPYVFDN 410
                 68999999999*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3633.68
//
Query:       CTQ28389.1  [L=447]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.6e-120  401.0   0.2   4.2e-120  400.8   0.2    1.0  1  DUF1338   Domain of unknown function (DUF1338)
  ------ inclusion threshold ------
       0.28   11.1   0.2       0.28   11.1   0.2    2.3  2  VEK-30    Plasminogen (Pg) ligand in fibrinolytic pathway


Domain annotation for each model (and alignments):
>> DUF1338  Domain of unknown function (DUF1338)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.8   0.2  4.7e-124  4.2e-120       1     324 []       9     401 ..       9     401 .. 0.98

  Alignments for each domain:
  == domain 1  score: 400.8 bits;  conditional E-value: 4.7e-124
     DUF1338   1 elaralldalsekYlarvpkvralvelvraanaaslssegek......tdelerllvedHgAiRtggvtnegidalarlfaslGyvpvgeydlpekklp 93 
                 e+++++++a+s++Y+++vp++++l+elv+++n a+l+++++        del+rl+ve+HgAiR+g  t+e++++l+r+fa +G++pv++ydl+++++p
  CTQ28389.1   9 EIREHFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPQLheqlanADELARLNVERHGAIRVG--TAEELATLRRMFAIMGMYPVSYYDLSQAGVP 105
                 689************************************9998999888889**************..******************************* PP

     DUF1338  94 ahwtaFrpp.eedlaknlpRvFiSeLrvedlsdaaqraieayvlaareiftkrllellekleedggltagdaeafvaealetfrwqkeapvakadyelL 191
                 +h+taFrp+ +++la+n++R+F+S+Lr+e++++ a+r++++ +la+r+ift+r+l+l++++e++g++t++da++fv+ealetfrw+++a+v++++y++L
  CTQ28389.1 106 VHSTAFRPIdDAALARNPFRIFTSLLRLELIENRALRERAEAILARRKIFTPRCLALIAQYEAEGEFTSADAREFVQEALETFRWHRQATVDEETYHAL 204
                 *********9999************************************************************************************** PP

     DUF1338 192 aaeseyaAwvl.vngyaiNHlTprvldidalqafleergiklkdeieGpptvspdglLrQtSfkAleeevkfaegsgeevgavparfgEieqRgvlltn 289
                 ++e++++A+v+ + g++iNHlTpr+ldid++q+ + e gi++k+ ieGpp+++ ++lLrQtSfkAlee+v fa   ge  g+++arfgEieqRgv+lt+
  CTQ28389.1 205 HREHRLIADVVcFPGCHINHLTPRTLDIDRVQSLMPECGIEPKALIEGPPRREVPILLRQTSFKALEEPVMFA---GEHRGTHSARFGEIEQRGVALTP 300
                 ************************************************************************9...666689***************** PP

     DUF1338 290 kgrnlydellkea..................................................................gepilyedFlpgnAagIFes 322
                 kgr+lyd+ll++a                                                                  ++pi+yedFlp++AagIF+s
  CTQ28389.1 301 KGRALYDRLLQAAgtgkdnlshqqhlqevfsefpdsefllrqqglawfryrltptgeahrqafrpgddpqpliergwvvAQPIIYEDFLPVSAAGIFQS 399
                 **********************************************************************9999866544******************* PP

     DUF1338 323 tl 324
                 +l
  CTQ28389.1 400 NL 401
                 96 PP

>> VEK-30  Plasminogen (Pg) ligand in fibrinolytic pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   3.2e-05      0.28       1      13 [.      57      68 ..      57      69 .. 0.95
   2 ?   -1.5   0.7      0.29   2.6e+03       1       7 [.     115     121 ..     115     121 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.2e-05
      VEK-30  1 DDaELeRLKNERH 13
                +D EL RL+ ERH
  CTQ28389.1 57 AD-ELARLNVERH 68
                79.********** PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.29
      VEK-30   1 DDaELeR 7  
                 DDa+L R
  CTQ28389.1 115 DDAALAR 121
                 9****88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3535.61
//
Query:       CTQ28390.1  [L=246]
Description: protocatechuate 3,4-dioxygenase beta chain (3,4-PCD) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-55  187.1   0.0    2.4e-55  186.8   0.0    1.1  1  Dioxygenase_C    Dioxygenase
    1.4e-15   56.6   1.5    2.7e-15   55.7   1.5    1.5  1  PCDO_beta_N      Protocatechuate 3,4-dioxygenase beta subunit
      8e-06   26.0   0.0    3.4e-05   24.0   0.0    2.0  1  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
  ------ inclusion threshold ------
       0.22   11.8   0.0       0.37   11.1   0.0    1.2  1  DUF4198          Domain of unknown function (DUF4198)
       0.24   10.7   0.0       0.33   10.2   0.0    1.1  1  MTHFR            Methylenetetrahydrofolate reductase


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.8   0.0   6.6e-59   2.4e-55       1     182 []      48     231 ..      48     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: 186.8 bits;  conditional E-value: 6.6e-59
                    ---S--EET..--EEESEEE---S-.-TT--EEEEEEEEE-TTSSB-TT-EEEEE---TTS--TTS-TTS-SS.TTTTE..EEEE--TTSEEEEEE CS
  Dioxygenase_C   1 iegPlyvee..apededlarledkg.eeegerlvlsGrvldeaGkplagalvelWhanaeGrYshkkeeheap.elnlr..griltdeeGryrirt 90 
                    i+gP+++++  +p d+dl+ +  k+  ++ger++++G v+d  G+p++++lve+W+ana GrY+hkk+++ ap ++n+   gr+ltde+G+y +rt
     CTQ28390.1  48 ITGPVFSHDdlGPLDNDLILNYAKEgLPIGERIIVHGYVRDGFGRPMKNTLVEVWQANAGGRYRHKKDQYLAPiDPNFGgcGRVLTDENGYYCFRT 143
                    79******999*******99988877****************************************************9999************** PP

                    E----EE--TTSHHHHHHHHTT---EE-SEEEEEEE-TTB.--EEEEEEETT-TTTT.S-TT--.....--TTTEE--EEE-SHS-.EEEEE--EE CS
  Dioxygenase_C  91 ikPapYpipndGptgklldalgrhawRPaHiHfsvsapgh.rklvTqlyfegdkyla.ddivsa.....akeeLiaeleesedeeekalelefdlv 179
                    ikP+pYp++n           +  +wRPaHiHfs+s+++  ++l+Tq+yfegd++++ ++iv +     a   Liael+++++ + ++l+++fdlv
     CTQ28390.1 144 IKPGPYPWRN-----------QASDWRPAHIHFSLSGDAWaQRLITQMYFEGDPLIKqCPIVRTinnddAVRTLIAELDMHAAVPLDCLAYRFDLV 228
                    **********...........889****************9****************9******99999999************************ PP

                    --B CS
  Dioxygenase_C 180 Ldg 182
                    L+g
     CTQ28390.1 229 LRG 231
                    *85 PP

>> PCDO_beta_N  Protocatechuate 3,4-dioxygenase beta subunit N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   1.5   7.5e-19   2.7e-15       2      33 ..      12      43 ..      11      44 .. 0.95

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 7.5e-19
  PCDO_beta_N  2 prdrasHPpalyPpYkSSvLRaPkqpLislpq 33
                 +rd++sHPpa++P+Yk+SvLR+Pk++Lisl++
   CTQ28390.1 12 HRDYSSHPPAYAPGYKTSVLRSPKNALISLQN 43
                 69****************************98 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   9.4e-09   3.4e-05       2      63 ..      82     162 ..      81     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 9.4e-09
  CarboxypepD_reg   2 isGrVtdasgapiagatVtvtnadtg...................tvastttdadGafrlrglppgtysvtvsapGyatat 63 
                      ++G+V+d  g+p+++  V+v +a+ g                      ++ td++G++ +r ++pg+y  + +a+  ++a 
       CTQ28390.1  82 VHGYVRDGFGRPMKNTLVEVWQANAGgryrhkkdqylapidpnfgGCGRVLTDENGYYCFRTIKPGPYPWRNQASDWRPAH 162
                      79******************876665689999999999998887668*********************9888777666665 PP

>> DUF4198  Domain of unknown function (DUF4198)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.37     161     205 ..      91     149 ..      89     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
     DUF4198 161 GkPlagaeveveyggt..ryrdapdeikv............ktdadGvvtftlpkaGlw 205
                 G+P++++ vev+ +++  ryr+++d++ +             td++G+  f+  k+G +
  CTQ28390.1  91 GRPMKNTLVEVWQANAggRYRHKKDQYLApidpnfggcgrvLTDENGYYCFRTIKPGPY 149
                 99************99999***9999776778888888888***********9999987 PP

>> MTHFR  Methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   9.1e-05      0.33     154     198 ..     154     198 ..     138     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.1e-05
                 T-S-HHHHHHHHHHHHHCT--EEEEEE-S-HHHHHHHHHHHHHCT CS
       MTHFR 154 eaksleadlkylkeKvdaGAdfiitQlffdvdkflkfveqvreag 198
                 +a++++    ++    da A+ +itQ++f+ d ++k +  vr + 
  CTQ28390.1 154 QASDWRPAHIHFSLSGDAWAQRLITQMYFEGDPLIKQCPIVRTIN 198
                 7889999999999999*******************9988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1961.71
//
Query:       CTQ28391.1  [L=206]
Description: protocatechuate 3,4-dioxygenase alpha chain (3,4-PCD) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-20   72.4   0.0    2.5e-19   69.4   0.0    1.9  1  Dioxygenase_C  Dioxygenase


Domain annotation for each model (and alignments):
>> Dioxygenase_C  Dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   1.4e-23   2.5e-19      24     181 ..      43     196 ..      33     197 .. 0.84

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 1.4e-23
                    -TT--EEEEEEEEE-TTSSB-TT-EEEEE---TTS--TTS-TTS-SS..TTTTE..EEEE--.TTSEEEEEEE----EE--TTSHHHHHHHHTT-- CS
  Dioxygenase_C  24 eeegerlvlsGrvldeaGkplagalvelWhanaeGrYshkkeeheap..elnlr..griltd.eeGryrirtikPapYpipndGptgklldalgrh 114
                    +  ger++++Grv+d  G p+++ l+e+W+ana+GrY+h +++++++  ++++r  gr+ +d   G +r++tikP+p   ++    g+l+      
     CTQ28391.1  43 DTAGERITIEGRVIDGSGTPVRDVLLEIWQANAAGRYNHPDDRQQQKavDPAFRgwGRTCSDfTSGIWRFETIKPGPVVGRD----GRLM------ 128
                    789************************************99987776689****99999999678************87776....3332...... PP

                    -EE-SEEEEEEE-TTB.--EEEEEEETT-TTTT..S-TT--.....--TTTEE--EEE-SHS-.EEEEE--EE-- CS
  Dioxygenase_C 115 awRPaHiHfsvsapgh.rklvTqlyfegdkyla..ddivsa.....akeeLiaeleesedeeekalelefdlvLd 181
                         H+ + v a g+   l T++yf+ ++  +  d++++       ++ Liae e + +e    + ++fd+ L+
     CTQ28391.1 129 ---APHVNLWVVARGInIGLNTRMYFADEHEANasDPVLNLiewevRRKTLIAEREVRGTE----VVYRFDIHLQ 196
                    ...359**********889*******98876656466666678886778888888777666....7799999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1565.46
//
Query:       CTQ28392.1  [L=307]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-34  118.2   0.0    4.5e-34  117.6   0.0    1.2  1  LysR_substrate  LysR substrate binding domain
    1.5e-18   66.5   4.7    1.6e-18   66.4   3.1    1.9  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.013   15.5   0.4       0.21   11.7   0.2    2.5  2  HTH_20          Helix-turn-helix domain
       0.11   12.4   0.6        0.2   11.5   0.6    1.5  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.0     1e-37   4.5e-34       7     208 ..     102     305 ..      97     306 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 1e-37
                     EEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGG CS
  LysR_substrate   7 rLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLargepvsle 99 
                      +riga pt+a  +lp ++ +f+++  +++l++ +++++ ll++l++ge+D++i +       sgl+++ L+ e l lv++p+hpL ++  v+l+
      CTQ28392.1 102 IVRIGALPTAALGILPTVIGQFHKQQKDITLQVATMNNTMLLAGLKSGEIDIGIGRMSDpeLMSGLHYELLFLESLKLVVRPGHPLLQE-TVTLS 195
                     58****************************************************9988888***************************9.899** PP

                     GGCTSEEEEESTTSTHHHHHHHHHHCTTEEC.EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCC CS
  LysR_substrate 100 dLadeplilleegsglrdlledalreaglkp.rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrel 193
                      + ++p ++ ++g+  r+ +e++l+++g k   + +e+ s++  ++l    + + ++p+ av+d+l++g l alp++   +  ++++++r +  l
      CTQ28392.1 196 RVMEWPVVVSPKGTVPRQNAEALLQSQGCKMpAGCIETLSASLSRQLTVDFDYVWFVPSGAVKDDLRRGVLTALPIATQGAGEPIGILTRVDATL 290
                     ******************************98999*******************************************8888************* PP

                     HHHHHHHHHHHHHHH CS
  LysR_substrate 194 spavrafidflreal 208
                     +p +++++ ++r+++
      CTQ28392.1 291 TPGTQTLLSAIRKSM 305
                     ***********9875 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   3.1   3.5e-22   1.6e-18       1      60 []      13      72 ..      13      72 .. 0.96
   2 ?   -2.8   0.0       1.4   6.2e+03      24      39 ..     124     139 ..     122     141 .. 0.81

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 3.5e-22
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSS.EEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgr.glrLTeaGe 60
                lr+l++fvava++g++ rAAe L+lsqpa+s+ +++LE++ g++LfeR gr g++LT  Ge
  CTQ28392.1 13 LRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFER-GRlGAQLTLVGE 72
                79**********************************************.7779****8875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
                 TS-HHHHHHHHHHHHH CS
       HTH_1  24 glsqpavsrqikrLEe 39 
                 +  q+ ++ q++++++
  CTQ28392.1 124 HKQQKDITLQVATMNN 139
                 5679999999999998 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   4.6e-05      0.21      16      50 ..      13      51 ..      11      54 .. 0.91
   2 ?    0.9   0.0      0.11   4.8e+02       7      20 ..     257     273 ..     254     294 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.6e-05
                HHHH....STCTTB-HHHHHHHHTS-HHHHHHHHHHHHH CS
      HTH_20 16 lraL....araegltaselaerldlskntlsyHLrvLee 50
                lr+L    a a+  t++  ae+l ls+  ls+ L++Le+
  CTQ28392.1 13 LRHLhtfvAVAQQGTLGRAAETLNLSQPALSKTLNELEQ 51
                67888888899999***********************97 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
                 HS-HHHHHHHHHH...S CS
      HTH_20   7 LahPvRrrilraL...a 20 
                 + +  Rr++l aL   +
  CTQ28392.1 257 VKDDLRRGVLTALpiaT 273
                 55778999999995541 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   4.4e-05       0.2      10      44 ..      23      57 ..      13      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.4e-05
                HTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30 10 enggnisatAkaLhvHrnTlryRLrrieellgldl 44
                +++g + ++A++L+++   l++ L+ +e+l+g  l
  CTQ28392.1 23 AQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRL 57
                567999**************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2258.06
//
Query:       CTQ28393.1  [L=790]
Description: putative quinate dehydrogenase (quinone) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-39  130.2   1.0    1.2e-06   28.1   0.0    7.7  7  PQQ            PQQ enzyme repeat
    6.2e-22   78.3   1.0    6.1e-06   26.0   0.0    4.4  4  PQQ_2          PQQ-like domain
    7.3e-07   29.5  30.5        0.3   11.6   0.0    9.5  8  PQQ_3          PQQ-like domain
  ------ inclusion threshold ------
        1.4    7.6   3.9        2.1    7.1   3.9    1.1  1  O-antigen_lig  O-antigen ligase like membrane protein


Domain annotation for each model (and alignments):
>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.3e-08     6e-05       1      30 [.     224     253 ..     224     258 .. 0.83
   2 !   14.1   0.0   7.3e-06     0.033       2      28 ..     288     314 ..     287     323 .. 0.82
   3 !   13.7   0.1   9.7e-06     0.043       4      32 ..     355     384 ..     353     389 .. 0.83
   4 !   28.1   0.0   2.7e-10   1.2e-06      11      37 ..     441     467 ..     437     468 .. 0.91
   5 ?    4.2   0.0     0.011        47       5      26 ..     490     511 ..     486     520 .. 0.76
   6 !   17.8   0.0     5e-07    0.0023      10      30 ..     664     684 ..     655     691 .. 0.83
   7 !   19.4   0.0   1.6e-07   0.00069       4      37 ..     719     752 ..     715     753 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.3e-08
                 TEEEEEETTSEEEEEETTTCCEEEEEESSS CS
         PQQ   1 gvvylgsadGylyAlDadTGkvlWrfktgg 30 
                 +++y++++  +++AlD+d+Gk++Wr++ ++
  CTQ28393.1 224 DTLYVCTPYSKVLALDVDSGKEKWRYDSKS 253
                 5789995555****************9665 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 7.3e-06
                 EEEEEETTSEEEEEETTTCCEEEEEES CS
         PQQ   2 vvylgsadGylyAlDadTGkvlWrfkt 28 
                 +++l++ d +l A+DadTGk++  f  
  CTQ28393.1 288 RLFLPTIDARLIAIDADTGKLCENFGD 314
                 578999**************9976665 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 9.7e-06
                 EEE.ETTSEEEEEETTTCCEEEEEESSSCG CS
         PQQ   4 ylg.sadGylyAlDadTGkvlWrfktggpv 32 
                 y +  ++G+++A+D+ TGk+ W  ++g+p 
  CTQ28393.1 355 YSTgEPPGVVRAFDVHTGKLAWAWDPGNPA 384
                 5555899***************98888876 PP

  == domain 4  score: 28.1 bits;  conditional E-value: 2.7e-10
                 EEEEEETTTCCEEEEEESSSCGSSESE CS
         PQQ  11 ylyAlDadTGkvlWrfktggpvlslpi 37 
                  ++A+Da+TG+v+W+f+t +++l++++
  CTQ28393.1 441 SIVAVDATTGQVRWHFQTTHHDLWDFD 467
                 799*********************986 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.011
                 EEETTSEEEEEETTTCCEEEEE CS
         PQQ   5 lgsadGylyAlDadTGkvlWrf 26 
                  +s+ G ++ l+++TG+ + ++
  CTQ28393.1 490 QTSKQGMIFMLNRETGEPVAKV 511
                 34888***********987555 PP

  == domain 6  score: 17.8 bits;  conditional E-value: 5e-07
                 SEEEEEETTTCCEEEEEESSS CS
         PQQ  10 GylyAlDadTGkvlWrfktgg 30 
                 G+  A+D++TGk++W++++g 
  CTQ28393.1 664 GTMSAVDLKTGKLVWQVPVGT 684
                 8999**************987 PP

  == domain 7  score: 19.4 bits;  conditional E-value: 1.6e-07
                 EEEETTSEEEEEETTTCCEEEEEESSSCGSSESE CS
         PQQ   4 ylgsadGylyAlDadTGkvlWrfktggpvlslpi 37 
                 ++g+ d yl+A+D ++Gk++W+ +++   +s p+
  CTQ28393.1 719 FAGTQDFYLRAFDTANGKEIWKSRLPVGSQSGPM 752
                 5669999******************999999887 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.1e-06    0.0047      98     151 ..     196     253 ..     173     264 .. 0.66
   2 !   16.8   0.1   8.5e-07    0.0038      26     101 ..     277     377 ..     250     398 .. 0.72
   3 !   26.0   0.0   1.4e-09   6.1e-06       3     146 ..     362     509 ..     360     523 .. 0.77
   4 !   24.4   0.0   4.1e-09   1.8e-05       3      78 ..     664     752 ..     662     773 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.1e-06
       PQQ_2  98 rlWstqqrseepaelrssaspava....gdtvvvgessgklvaldpkdGkvlWerel.a 151
                 ++W  +    ++ + +s a++  +    gdt++v ++ +k+ ald+++Gk+ W + + +
  CTQ28393.1 196 VAWVAHTGDIPQSN-GSGAEDQNTplqiGDTLYVCTPYSKVLALDVDSGKEKWRYDSkS 253
                 46663333334444.23333333335578999999999999999999999999887744 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 8.5e-07
       PQQ_2  26 gggvsravlsggtlfvatgggrlvaldaatGkvlWettlegpvvga................plvaegrvvvva.......sdg....qlialdaedGk 97 
                  +g+ ++    ++lf  t  +rl+a+da tGk+  ++  +g v  +                plva++ vvv           g    +++a+d ++Gk
  CTQ28393.1 277 AAGT-QPAACSRRLFLPTIDARLIAIDADTGKLCENFGDRGIVDLSvgmgevkagyyqqtstPLVAGNVVVVGGrvadnysT-GeppgVVRAFDVHTGK 373
                 4445.33337788888889999999999999987776655554444777777889999999999999999888788555541.1466689999999999 PP

       PQQ_2  98 rlWs 101
                 ++W 
  CTQ28393.1 374 LAWA 377
                 9997 PP

  == domain 3  score: 26.0 bits;  conditional E-value: 1.4e-09
       PQQ_2   3 gvvsaldaatGaelWrvdlarplgggvsravlsggtlfvatgggrlvaldaatGkvlWettlegpvvgaplvaegrvvvvasdg..qlialdaedGkrl 99 
                 gvv+a+d  tG++ W  d+    g+   ++v+++g  +++ g++++ ++   + k+   + ++g   ++ ++ ++r+ + + ++  +++a+da++G++ 
  CTQ28393.1 362 GVVRAFDVHTGKLAWAWDP----GNPALTGVPPEGQTYTR-GTPNVWSAMSYDAKLNLIYLPTGN-ATPDFFGGERTALDD-KYssSIVAVDATTGQVR 453
                 89***************98....5555567799******9.555555555578888887777776.555588888886666.4457************* PP

       PQQ_2 100 Wstqqrseepaelrssaspava........gdtvvvges.sgklvaldpkdGkvlW 146
                 W++q + +   ++  +++p ++           v+v++s  g + +l+ ++G+++ 
  CTQ28393.1 454 WHFQTTHHDLWDFDLPSQPLLYdlpdgkggTTPVLVQTSkQGMIFMLNRETGEPVA 509
                 **888776777777788888878888887444455555588888999999999865 PP

  == domain 4  score: 24.4 bits;  conditional E-value: 4.1e-09
       PQQ_2   3 gvvsaldaatGaelWrvdlar.............p.......lgggvsravlsggtlfvatgggrlvaldaatGkvlWettlegpvvgaplvaegr 78 
                 g+ sa+d +tG+++W+v +++             p       lg+ +  a+ sg  +f++t    l a+d+a+Gk++W+ +l++  ++     + +
  CTQ28393.1 664 GTMSAVDLKTGKLVWQVPVGTvedtgplgirmhmPipigmptLGASL--ATQSGLLFFAGTQDFYLRAFDTANGKEIWKSRLPVGSQS-----GPM 752
                 6789*************554444455565555551556664455555..995555555557778899***************887443.....344 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.6      0.06   2.7e+02      15      33 ..      34      51 ..      28      56 .. 0.78
   2 ?    2.9   0.0     0.038   1.7e+02      21      39 ..     223     241 ..     198     242 .. 0.93
   3 !   11.6   0.0   6.7e-05       0.3       1      40 []     243     305 ..     243     305 .. 0.88
   4 !    9.5   0.5   0.00031       1.4       9      40 .]     329     371 ..     326     371 .. 0.86
   5 ?    0.9   2.0      0.16   7.2e+02       8      40 .]     398     449 ..     372     449 .. 0.69
   6 ?    2.6   0.0     0.046   2.1e+02       1      40 []     450     504 ..     450     504 .. 0.52
   7 !   10.5   0.9   0.00015      0.68       1      39 [.     674     733 ..     674     734 .. 0.83
   8 ?    1.5   0.0       0.1   4.7e+02       1      17 [.     735     751 ..     735     765 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.06
       PQQ_3 15 sspavdgglvyvgtgdGtl 33
                + +a++gg++y++ + G +
  CTQ28393.1 34 AKLALVGGTLYFALM-GVV 51
                5679********977.655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.038
       PQQ_3  21 gglvyvgtgdGtlyAlDae 39 
                 g+++yv t+  ++ AlD +
  CTQ28393.1 223 GDTLYVCTPYSKVLALDVD 241
                 89***************87 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 6.7e-05
       PQQ_3   1 GevlWsv.......................qlpgpvnsspavdgglvyvgtgdGtlyAlDaet 40 
                 G+++W++                       q+  +++++pa+  ++++  t d +l A+Da+t
  CTQ28393.1 243 GKEKWRYdskssspnwqrcrglgyyedsqaQTAPAAGTQPAACSRRLFLPTIDARLIAIDADT 305
                 8899999999999999999988888888887766777999*********************98 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.00031
       PQQ_3   9 lpg.pvnsspavdgglvyvgtg..........dGtlyAlDaet 40 
                  ++ + +s+p+v+g++v+vg+            G ++A+D +t
  CTQ28393.1 329 AGYyQQTSTPLVAGNVVVVGGRvadnystgepPGVVRAFDVHT 371
                 5554556999*****************************9887 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.16
       PQQ_3   8 qlpgpvnsspavdg..glvyvgtg..................dGtlyAlDaet 40 
                 ++p  v+s++ +d   +l+y  tg                    +++A+Da+t
  CTQ28393.1 398 GTP-NVWSAMSYDAklNLIYLPTGnatpdffggertalddkySSSIVAVDATT 449
                 334.5777778887445799999988888888888888888888888888876 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.046
       PQQ_3   1 GevlWsvql..pg....pvnssp.avd.....ggl..vyvgtg.dGtlyAlDaet 40 
                 G+v+W +q+  ++    ++ s+p ++d     gg+  v v t+ +G +++l+ et
  CTQ28393.1 450 GQVRWHFQTthHDlwdfDLPSQPlLYDlpdgkGGTtpVLVQTSkQGMIFMLNRET 504
                 8999999773222332444455543335544444355444444477777777666 PP

  == domain 7  score: 10.5 bits;  conditional E-value: 0.00015
       PQQ_3   1 GevlWsvqlpgpvnssp....................avdgglvyvgtg.dGtlyAlDae 39 
                 G+++W+v+++    ++p                    a+  gl++++++ d  l+A+D++
  CTQ28393.1 674 GKLVWQVPVGTVEDTGPlgirmhmpipigmptlgaslATQSGLLFFAGTqDFYLRAFDTA 733
                 99*****9987555677788889999999999999889999988888777********86 PP

  == domain 8  score: 1.5 bits;  conditional E-value: 0.1
       PQQ_3   1 GevlWsvqlpgpvnssp 17 
                 G+++W+ +lp   +s+p
  CTQ28393.1 735 GKEIWKSRLPVGSQSGP 751
                 9******9998888888 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.9   0.00046       2.1     196     272 ..      17      95 ..      11      97 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00046
  O-antigen_lig 196 kfiiillllillllllGTKvalfGliiiliialilllik.lilkkkklkkkkl.llaiillvligillaiypyspiyrr 272
                     +  ++l++ l++ +lG K+al+G  + ++++ ++++i  +++ +++     l ++a+i+ v+ +i+ a ++y p+ +r
     CTQ28393.1  17 LLAGLMLIIGLAVGILGAKLALVGGTLYFALMGVVMVIAaVLIFRNRRGGILLyAVAFIASVIWAISDAGWNYWPLFSR 95 
                    555567777789999********99999999988888887666666666555558888888888888899999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 5355.75
//
Query:       CTQ28394.1  [L=372]
Description: Alcohol dehydrogenase class 3 (Alcohol dehydrogenase class III) (S-(hydroxymethyl)glutathione dehydrogenase) (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-26   89.8   1.6    9.5e-26   89.8   1.6    2.0  2  ADH_N         Alcohol dehydrogenase GroES-like domain
    4.4e-23   81.7   0.3    7.6e-23   80.9   0.3    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
    2.3e-07   31.9   0.0    5.2e-07   30.8   0.0    1.6  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    6.9e-05   22.4   0.0    0.00014   21.5   0.0    1.5  1  Glu_dehyd_C   Glucose dehydrogenase C-terminus
     0.0021   18.0   1.4        0.2   11.7   0.5    2.2  2  MinC_C        Septum formation inhibitor MinC, C-terminal dom
  ------ inclusion threshold ------
      0.033   13.6   0.1      0.055   12.8   0.1    1.3  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
      0.068   12.9   0.1       0.11   12.2   0.1    1.4  1  Met_10        Met-10+ like-protein
        1.5    8.4   3.5        2.7    7.6   3.5    1.3  1  CLLAC         CLLAC-motif containing domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   1.6   4.3e-29   9.5e-26       2     105 ..      28     151 ..      27     155 .. 0.81
   2 ?   -1.6   0.1       1.1   2.5e+03      46      61 ..     178     192 ..     159     197 .. 0.72

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 4.3e-29
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-................... CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlC................... 81 
                 gevl+k++ +g+C++D  +l+g +++e  +p +lGHE  G+v+evg++v++lk Gd+V+   + +cgeC+ Ck+g++nlC                   
  CTQ28394.1  28 GEVLVKITHTGVCHTDAFTLSG-DDPEGVFPAVLGHEGGGIVVEVGEGVTSLKPGDHVIPLYTAECGECKFCKSGKTNLCqavratqgkglmpdgttrf 125
                 89********************.8********************************************************7777777777776666665 PP

                 .....TTBEETTTSS-S..SSBSEEEECGGG CS
       ADH_N  82 .....eeakllgvsldG..gfaeyvvvpekk 105
                      + ++     + G  +f+ey+v+ e +
  CTQ28394.1 126 syngePIYH-----YMGtsTFSEYTVCAEIS 151
                 432222222.....33311577777766655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
                 ESTT-CS--TT-EEEE CS
       ADH_N  46 vgpevkklkvGdrVvv 61 
                 v  ++ k+k Gd V+v
  CTQ28394.1 178 VH-NTAKVKAGDTVAV 192
                 33.3457999999998 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.3   3.4e-26   7.6e-23       1     119 [.     197     319 ..     197     331 .. 0.88

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 3.4e-26
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTC.H.HHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEE.EEEEECSCTSSEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykea.d.lverikeltggegvdvvfecvGsgatleaalkllkpg.GrlvvvGggkgee 95 
                 g+Gla++q A  + a ++ avd +++k+ lak++Ga+ +in+++  + +++ i elt ++gvd++fec+G+  +++aal+++++g G  v++G+ + ++
  CTQ28394.1 197 GIGLAVIQGAVQAQAgRILAVDTNPDKFTLAKEMGATDFINPNDYdKpIQDVIVELT-DGGVDFSFECIGNVNVMRAALECCHKGwGESVIIGVAGAGQ 294
                 8*****************************************555336899999***.55**********************************55556 PP

                 EEEHHHHH.HTT-EEEEE-SSCHHH CS
  ADH_zinc_N  96 efdlrnll.lkeksilGsllgslre 119
                 e+++r++   + +  +Gs +g+++ 
  CTQ28394.1 295 EIKTRPFQlVTGRVWRGSAFGGVKG 319
                 699999554999999*****99544 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   2.3e-10   5.2e-07       2     127 ..     231     362 ..     230     363 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 2.3e-10
                   T-SEEE...ETT..STTHH.HHH-TT-EEEEEES-HHHHH.HHHHHHE.EEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHH CS
  ADH_zinc_N_2   2 GAdevi...dyr..tedfe.aatggegvDvvldtvggealleaslkvl.pggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadile 91 
                   GA+ +i   dy+   +d+  + t  +gvD  ++++g+ + ++a+l+++ +g G  v ig   + +++  ++++  +++v     f   ++ + + l 
    CTQ28394.1 231 GATDFInpnDYDkpIQDVIvELT-DGGVDFSFECIGNVNVMRAALECChKGWGESVIIGVAGAGQEIKTRPFQLVTGRVWRGSAFGGVKG-RSQ-LP 324
                   77778877766642345557787.567*********99999*******8888**988884345566666666555555555555543444.566.** PP

                   HHHHHHHHHH--..--EEEEEEGGGHHHHHHHHHSS-- CS
  ADH_zinc_N_2  92 elaalieeGklr..pvvdrvfpleeaaeAhrylesgra 127
                    +++   +Gk+r  p +++++ple+++eA++++++g+ 
    CTQ28394.1 325 GMVEDAMAGKIRldPFITHRLPLEQINEAFDLMHEGKS 362
                   **********77669*******************9985 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   6.1e-08   0.00014      32     212 .]     188     369 ..     174     369 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 6.1e-08
  Glu_dehyd_C  32 esalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGat.Yv..dsretpvdeipe..aseemdlvvEaTGsakhafeaiealap. 123
                  +++ v G G +GL  +    + + +  r+  +++  +p  +  l +e+Gat ++  +   +p++++    ++  +d+ +E+ G+ +++ +a+e     
   CTQ28394.1 188 DTVAVFGLGGIGLAVIQGA-V-QAQAGRILAVDT--NP-DKFTLAKEMGATdFInpNDYDKPIQDVIVelTDGGVDFSFECIGNVNVMRAALECCHKg 280
                  6899********9774433.3.455666666664..44.46779******955522344678888643115678******************988652 PP

  Glu_dehyd_C 124 nGvaaLlGvpeds.evevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdldeleeAfe..dddetiKtvvel 212
                   G  +++Gv     e++ +  +l +  v +  a +G v  + +   +  d++a   +  ld ++t++++l++++eAf+  ++ ++i+tv+++
   CTQ28394.1 281 WGESVIIGVAGAGqEIKTRPFQLVTGRVWRGSA-FGGVKGRSQLPGMVEDAMA--GKIRLDPFITHRLPLEQINEAFDlmHEGKSIRTVIHF 369
                  699*******7644999999*****99999887.6888877776666666554..45669*****************94345589***9987 PP

>> MinC_C  Septum formation inhibitor MinC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.5     9e-05       0.2      21      74 ..     175     230 ..     171     256 .. 0.76
   2 ?    4.9   0.0     0.011        25      17      75 ..     283     342 ..     269     366 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9e-05
                 SC-B-TT-EEEESS-EEEEEEE-SEEEE...-TTS-TT--EEEEEE--SEEEETTEE CS
      MinC_C  21 lgdVnpGAeviAdgniivlGalrGrahA...GakgneearifalklepeqlrIadyi 74 
                 +g+V++ A+v A++ + v+G l G+ +A   Ga + +  ri+a + +p +  +a+ +
  CTQ28394.1 175 IGAVHNTAKVKAGDTVAVFG-LGGIGLAviqGAVQAQAGRILAVDTNPDKFTLAKEM 230
                 79*****************9.6676555222777777789***99999999988444 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.011
                 EEEESC-B-TT-EEEESS-EEEEEEE.-SEEEE-TTS-TT--EEEEEE--SEEEETTEEE CS
      MinC_C  17 dlvvlgdVnpGAeviAdgniivlGal.rGrahAGakgneearifalklepeqlrIadyia 75 
                 + v++g   +G e+      +v G++ rG+a+ G+kg+++   ++++  + ++r++ +i+
  CTQ28394.1 283 ESVIIGVAGAGQEIKTRPFQLVTGRVwRGSAFGGVKGRSQLPGMVEDAMAGKIRLDPFIT 342
                 5688899999999999999999998669***********999999999999999996555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.5e-05     0.055      34      77 ..     185     229 ..     175     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.5e-05
                   GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHH CS
  2-Hacid_dh_C  34 lsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeee 77 
                    +g tv+++GlG IG av++ + + ++ +++a+d++++k + ++e
    CTQ28394.1 185 KAGDTVAVFGLGGIGLAVIQGAVQAQAgRILAVDTNPDKFTLAKE 229
                   5799****************998777769*****99886554444 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   5.1e-05      0.11      97     142 ..     183     229 ..     178     278 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.1e-05
                 T--TT-EEEET.T-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHH CS
      Met_10  97 lveegevVvdv.fAGiGpfaipiakyskakrvlaidlnPesvkylke 142
                 +v+ g++V    + GiG   i  a+ ++a r+la+d nP+ + + ke
  CTQ28394.1 183 KVKAGDTVAVFgLGGIGLAVIQGAVQAQAGRILAVDTNPDKFTLAKE 229
                 57778877554389**************************9988776 PP

>> CLLAC  CLLAC-motif containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.5    0.0012       2.7      10      23 ..     164     177 ..     164     178 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0012
       CLLAC  10 vCLLACiitTaigV 23 
                 vCLL C +tT ig 
  CTQ28394.1 164 VCLLGCGVTTGIGA 177
                 8***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2877.27
//
Query:       CTQ28395.1  [L=91]
Description: regulator protein that represses frmRAB operon [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-19   69.4   0.5    2.8e-19   69.3   0.5    1.0  1  Trns_repr_metal  Metal-sensitive transcriptional repressor


Domain annotation for each model (and alignments):
>> Trns_repr_metal  Metal-sensitive transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.5   1.5e-23   2.8e-19       1      75 [.       7      86 ..       7      88 .. 0.85

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 1.5e-23
                     HHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHH.....HHHHHHHHHH CS
  Trns_repr_metal  1 ekkkllnrLkrieGQvrgiqrmieedryCidiltQlaAvrsalnkvglelledhlkhcva..eaiee.....ekieeliell 75
                     +kk++l r++ri+GQv++++r++e +++C+ il+Q+a++r+a n+++ e++e hl++ ++  ++        + ++e+  ll
       CTQ28395.1  7 DKKRALSRVRRIRGQVEALERALESGEPCMTILQQIASIRGAANGLMGEMVEIHLQDELVsgDT--TpeqraARMAEVGHLL 86
                     699********************************************************96633..2223456666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 765.31
//
Query:       CTQ28396.1  [L=175]
Description: cytochrome b561 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-22   80.1  14.0    1.7e-22   79.9  14.0    1.0  1  Ni_hydr_CYTB    Prokaryotic cytochrome b561
      0.001   19.5   7.3     0.0069   16.9   1.4    2.6  2  DUF4405         Domain of unknown function (DUF4405)
  ------ inclusion threshold ------
      0.041   14.0   6.7       0.15   12.2   0.5    2.6  2  Cytochrom_B561  Eukaryotic cytochrome b561


Domain annotation for each model (and alignments):
>> Ni_hydr_CYTB  Prokaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9  14.0   2.8e-26   1.7e-22       2     181 ..       5     172 ..       4     173 .. 0.91

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 2.8e-26
                   ----TTHHHHHHHHHHHHHHHHHHHHHS------S-GGG-HHHHHHHHHHHHHHHHHHHHHHH------------STTTSSSSS------------- CS
  Ni_hydr_CYTB   2 yslvarllHWlnallvvllllsgllianlhprlywgdsgkaralHklaGlvllalllfrllwlkkakkpspriifrqikrdltlllrgrkpeagknn 98 
                   ys + + +HWl+ llvv++++   l  + +++           +H ++G+++++l+++rll++                      l+ + p+  +++
    CTQ28396.1   5 YSGLQIGIHWLVFLLVVVAYAAMELRGFFPRSERPLI----NMVHVSCGITIFVLMVARLLVR----------------------LKSPAPPIVPKP 75 
                   77888899*************8887777777766553....457*******************......................************ PP

                   ---TT.....THHHHHHHHHHHHHHHHHHHTHHHHHHHH.............HTS-THHHHHHH.HHHHHHHHHHHHHHHHHHHHHH---X.XXXXX CS
  Ni_hydr_CYTB  99 plqkl.....vhlllyvllvvliltGlllsfaatagfpll..........lddkggaqlarelHellaaallafvvlHiaaallhgpvkkd.tlrrM 179
                   ++ +       hl++y+l+++l+l G++++   ++g p++            d++  + ++ +He+la+a ++++ lH++aallh+++ kd tl rM
    CTQ28396.1  76 SPMMTgfahlGHLAIYLLFIALPLIGMVMM--YWRGNPWYafgltmpyapQSDFERVDTLKAIHEWLANAGYFVIGLHALAALLHHYWWKDnTLLRM 170
                   ***99************************6..56777777888889999999********************************************* PP

                   XX CS
  Ni_hydr_CYTB 180 it 181
                   ++
    CTQ28396.1 171 MP 172
                   86 PP

>> DUF4405  Domain of unknown function (DUF4405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.4    0.0045        27      25      59 ..      17      57 ..       7      58 .. 0.76
   2 !   16.9   1.4   1.2e-06    0.0069       4      62 ..      88     152 ..      85     156 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0045
     DUF4405 25 lpsgrgaywa.....flgl.skhqwrdiHeilgllflilvv 59
                +  + +ay+a     f++  ++  + ++H  +g+  ++l+v
  CTQ28396.1 17 FLLVVVAYAAmelrgFFPRsERPLINMVHVSCGITIFVLMV 57
                444555666677666767789999***************98 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.2e-06
     DUF4405   4 lllllsflvlaiSGillsfavlpsgrgaywa..........flgl...skhqwrdiHeilgllflilvvlHl 62 
                 l++ l+f++l + G+++ +     +rg+ w+          +        +++++iHe+l+ +  ++++lH 
  CTQ28396.1  88 LAIYLLFIALPLIGMVMMY-----WRGNPWYafgltmpyapQ--SdfeRVDTLKAIHEWLANAGYFVIGLHA 152
                 78899*********99883.....344445533454565553..05578899*******************6 PP

>> Cytochrom_B561  Eukaryotic cytochrome b561
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   2.5e-05      0.15      87     128 ..      20      62 ..       7      68 .. 0.66
   2 ?    4.8   0.2    0.0047        28      75     136 ..     100     162 ..      98     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.5e-05
                     HHHHHHHHTS.S---HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cytochrom_B561  87 lvlGfvlfll.pklskklralllplHvllGlvifvlaivtall 128
                     +v++ +++ l   ++++ r+l++ +Hv +G++ifvl ++ +l+
      CTQ28396.1  20 VVVAYAAMELrGFFPRSERPLINMVHVSCGITIFVLMVARLLV 62 
                     2333333322033567778999999***********9998776 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0047
                     HHHHHHHHHHHHH.HHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cytochrom_B561  75 lGlvtvilfllql.vlGfvlfllpklskklralllplHvllGlvifvlaivtallGlleklif 136
                     +G+v++ +    + ++G+++ ++p+   +   +l+ +H +l  + + +  + al +ll++ ++
      CTQ28396.1 100 IGMVMMYWRGNPWyAFGLTMPYAPQSDFERVDTLKAIHEWLANAGYFVIGLHALAALLHHYWW 162
                     677777777766526899999999999999999999999999999888777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1386.29
//
Query:       CTQ28397.1  [L=120]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 910.63
//
Query:       CTQ28398.1  [L=61]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.029   13.9   0.9       0.05   13.1   0.9    1.4  1  NapE      Periplasmic nitrate reductase protein NapE
       0.78    7.9   3.5       0.77    8.0   3.5    1.0  1  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> NapE  Periplasmic nitrate reductase protein NapE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.9   5.5e-06      0.05      16      36 ..       9      29 ..       2      35 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.5e-06
        NapE 16 lkaflfltvvlfPiLsValVg 36
                +  fl+l + ++PiL V+++g
  CTQ28398.1  9 IEGFLLLLLSMWPILLVVFIG 29
                678*****************9 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.5   8.6e-05      0.77      70     112 ..       9      55 ..       1      60 [. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 8.6e-05
     DUF2070  70 rs.lflalltelivviisllaillsall...qalvllalvlslalvf 112
                    ++l ll+++++++++++++++s+++    +  l +l+++la+ +
  CTQ28398.1   9 IEgFLLLLLSMWPILLVVFIGVAISFYTmllRKTALACLLFALAIGA 55 
                 4458999******************9888887777777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       970  (0.0541023); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 464.42
//
Query:       CTQ28399.1  [L=154]
Description: Transcriptional regulator, HxlR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-19   68.7   0.0      4e-19   68.2   0.0    1.2  1  HxlR      HxlR-like helix-turn-helix
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.19   11.7   0.0    1.3  1  HTH_45    Winged helix-turn-helix


Domain annotation for each model (and alignments):
>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   4.5e-23     4e-19       2      88 ..      21     106 ..      20     109 .. 0.97

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 4.5e-23
                 HHSTTHHHHHHHHTTS-EEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHHHHHHHHHH CS
        HxlR   2 iggkWkllilvellkgkkRfselkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelkkwgeeyle 88 
                 ig++W l+i++e ++  +Rfse++++l ++++++La+rL++L   g++e  + +      eY ltekGrs+ p++ +l +wge+y+ 
  CTQ28399.1  21 IGERWCLMIIREAFDDVRRFSEFQKNL-GLAKNILASRLKHLVDIGIFEILPASDGSAYKEYVLTEKGRSVFPIVVALRQWGERYMF 106
                 89*************************.9*******************************************************985 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.1e-05      0.19      27      65 ..      45      90 ..      29     100 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.1e-05
      HTH_45 27 ykanLsykllnkYLdmLvekgli.......kkskekYvlTekGlel 65
                ++  L  ++l + L++Lv+ g+            ++YvlTekG+ +
  CTQ28399.1 45 KNLGLAKNILASRLKHLVDIGIFeilpasdGSAYKEYVLTEKGRSV 90
                6777888999999********95558987666889********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1222.91
//
Query:       CTQ28400.1  [L=405]
Description: putative uncharacterized transporter YgaY [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-31  108.4  85.0    4.1e-25   88.5  43.5    2.0  2  MFS_1         Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.071   12.4  43.1       0.38   10.0  43.1    2.0  1  MFS_4         Uncharacterised MFS-type transporter YbfB


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5  43.5   4.6e-29   4.1e-25       5     325 ..      35     342 ..      28     347 .. 0.80
   2 !   33.8  33.5   1.9e-12   1.7e-08       3     168 ..     236     399 ..     235     403 .. 0.90

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 4.6e-29
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgagal 102
                  +l+ ++ + + p+l   +a +l +sp  ig ++t+  +g+a++ l+l +l+d +  r++++++ ll+++++l+++ +++++ +ll + ++ Gl+ +++
  CTQ28400.1  35 CALAVANVYSAQPLLD-SMAVSLKVSPGMIGSVITATQAGYAIGLLFLVPLGDWL-NRKYVVMSQLLLSVAALVAAgLSPNIATLLGAMLIVGLM-AVV 130
                 3444555555666666.99**********************************99.888888888888888677776778888***********9.799 PP

       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawk 201
                 + + +a++a ++++++rg+a+g l++g+  G++l   ++g++a+ +gWrav++ +a ++l+ +   +++   + p+ +++++k+       + l+++++
  CTQ28400.1 131 VQVLVAWVAILATPQKRGQAVGTLTSGIVSGILLSRFISGAIADIAGWRAVYLTAACLMLMIAG--IVWKIMPSPPQQPQPQKPT----YLSLLKSVFQ 223
                 999999999999999*********************************************9944..4777777777777777777....7777777899 PP

       MFS_1 202 allkdpvlw.illialllfffgfsg..lltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                 + l+ p+l    ++al++f+ +fs+   ++ +pl   + l ls + ++g +++l++++g+ +a  ag+++d     ++   ++l+l+l+++++++++ +
  CTQ28400.1 224 LYLTEPQLRkRGILALFIFA-AFSMlwSTMVMPL---TALSLS-HTQTG-MFGLAGFAGMLAAARAGKWADQ---GWAQRTTGLALALLTISWLPIGYA 313
                 99999999553444444443.4444334555555...678999.78888.8999999999999999999999...78********************** PP

       MFS_1 298 ssavllllvlvl.iGfglgfvfpsllala 325
                 ++++l+l++ v+ + f++  v +s+++l+
  CTQ28400.1 314 ETSLLWLIAGVIaLDFAVQAVHVSSQSLI 342
                 77777777555558886666655555554 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 1.9e-12
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlga 99 
                 ++a+++++a+s+l++++  +  ++l +s+++ g+ ++l +++ ++a+  +G ++d  +  r + l+ +ll++++ l + +a +sl +l+++ +   ++ 
  CTQ28400.1 236 ILALFIFAAFSMLWSTMV-MPLTALSLSHTQTGM-FGLAGFAGMLAAARAGKWADQgWAQRTTGLALALLTISW-LPIGYAeTSLLWLIAGVIALDFAV 331
                 578899999999999999.7789999*******7.89999999*************997777888888888888.555588555559************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlf 168
                  a+  ++++li +  p    +r +g ++ ++slG++ g++++  l+s++gW+av ++ a+vs+ af+++
  CTQ28400.1 332 QAVHVSSQSLIIAARPA-AASRLVGAYMCFYSLGSATGAIVATQLYSHWGWQAVCLAGAAVSACAFLIW 399
                 **************999.***********************************************9974 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  43.1   4.2e-05      0.38      12     360 ..      45     397 ..      33     400 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 4.2e-05
       MFS_4  12 ytpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlr.llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlah 109
                   p+L  +   +++s++ +g + +a  +GY +G l+ ++ l    +R   ++  ll++v++l+a +l  ++a++l + ++ G+ + vv v+++ +++  
  CTQ28400.1  45 AQPLLDSMAVSLKVSPGMIGSVITATQAGYAIGLLF-LVPLGDWLNRKYvVMSQLLLSVAALVAAGLSPNIATLLGAMLIVGLMAVVVQVLVAWVAILA 142
                 56999****************************885.57777776776659999***************************************999877 PP

       MFS_4 110 aaaarrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaaeaakaeqkslpllalll...aYglaG. 204
                  ++++r++  + l +G+  Gi++s  + + + +  +++ +++l +a l +++  +v+ ++p +++++ + + +    ++   ++++l l   +    G 
  CTQ28400.1 143 -TPQKRGQAVGTLTSGIVSGILLSRFI-SGAIADIAGWRAVYLTAACLMLMIAGIVWKIMP-SPPQQPQPQKPTY--LSLLKSVFQLYLtepQLRKRGi 236
                 .6777777777888*********9865.6677778888999********************.6666666666663..3333333333331012222332 PP

       MFS_4 205 fGYiitatFlvaiardg..aggalleallWllvGlaaivgvlvwlrvakrsglr...ralaaallieavgvl.lsllspsplglivssvllGltflait 297
                 +++ i a F ++   +     +  l +    ++Gla ++g+l+  r+ k  + +   r + +al++  ++ l +  + +s+l+li +++ l  +  a+ 
  CTQ28400.1 237 LALFIFAAFSMLWSTMVmpLTALSLSHTQTGMFGLAGFAGMLAAARAGKWADQGwaqRTTGLALALLTISWLpIGYAETSLLWLIAGVIALDFAVQAVH 335
                 3555666665554444432444445555667899999999999887776555441003344445444454332567899******************** PP

       MFS_4 298 alvlqlarelappatrrllglmTasfgigQilGpllasllaeatgslalallvaaaalvlaal 360
                  +   l+    p a  rl+g+    + +g + G+++a  l++  g  +++ l++aa+ + a l
  CTQ28400.1 336 VSSQSLIIAARPAAASRLVGAYMCFYSLGSATGAIVATQLYSHWGW-QAVCLAGAAVSACAFL 397
                 ******************************************9985.4455555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1036  (0.0577835); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 3176.26
//
Query:       CTQ28401.1  [L=333]
Description: adenosine deaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     1e-100  337.3   0.0   1.2e-100  337.1   0.0    1.0  1  A_deaminase  Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.1   0.0  6.5e-105  1.2e-100       2     327 ..       6     328 ..       5     329 .. 0.99

  Alignments for each domain:
  == domain 1  score: 337.1 bits;  conditional E-value: 6.5e-105
                  S-EEEEEEECCCSS-HHHHHHHHHHHCHT..SS-SCCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHTCCCCCCHHHHHHCCCCCHCTTCCCCCCCCSH CS
  A_deaminase   2 lpKvdlHvHldgclnpktllrlakkkgikeldekvveedeklltlqekfesLkeflydlsvdvlvlhwlievvrllavekakdlakdfvkylevifsP 99 
                  lp +d+H Hldg+++ +t+l+l+++ +i+ l+++ ++++ ++++  + + +L +fl++l+++v+vl+ + e++r++a+e+++d+a+++++y+e++fsP
   CTQ28401.1   6 LPLTDIHRHLDGNIRAQTILDLGREFNIA-LPATTLDTLRPHVQVTSLEPDLVSFLAKLDWGVKVLA-SLEACRRVAYENVEDAARNGLHYVELRFSP 101
                  799************************99.*************************************.****************************** PP

                  HHHHHH-GCSTCCHHHHCCCCCCCCCCHCCT-EEEEEECCETT.TCCGHCCCHHHHHHCCCCCCCCCCCCC-TTSTTGGGHHHHHCCCCHTT-EEEEE CS
  A_deaminase 100 lfeatagpqlpelevvlkvvdgfdsvedeskvkerlilvksrk.peewseeinelasyyrdytvvnldllndekiepaslflklraeagkstllltpH 196
                   ++a+ + +lp + vv++v+ g++++++++ v++rli + sr+ +e++++e+  +  ++r+ ++++ldl++de ++p++lf +++++a+++++++t+H
   CTQ28401.1 102 RYMAMTH-RLPVDGVVEAVIAGVQEGCRDFQVDARLIGILSRTfGEAACQEELAALLAHRE-GITALDLAGDELGFPGTLFRNHFNQARDAGWHITVH 197
                  *******.9***************************************************9.************************************ PP

                  ESSSS-CHHHHHHHHCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-SHHHHHHHHH CS
  A_deaminase 197 aGEagglehvveAllllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlqfgttLieeYaiaa 294
                  aGEa+g+e++++A+++l+aerigHGv++++dp+L++ la+++i++e c +SNv++++++++a++Plk+fle+g+ +slntDDP+++g+++i+eY++aa
   CTQ28401.1 198 AGEAAGPESIWQAIRELGAERIGHGVKAVEDPALMDYLAEHRIGIESCLTSNVQTSTVASLAQHPLKQFLEHGVLASLNTDDPAVQGVDIIHEYTVAA 295
                  ************************************************************************************************** PP

                  HHHT--HHHHHHHHHHHHHCSSS-HHHHHHHCH CS
  A_deaminase 295 qvfklseedlaelarNsvkqsflsadekkklld 327
                   +++ls+e++++ ++N++  +fl ++ek++l++
   CTQ28401.1 296 PAAGLSREQIRQAQINGLTLAFLGEQEKAALIQ 328
                  ******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2805.03
//
Query:       CTQ28402.1  [L=346]
Description: putative oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-24   87.6   0.0    1.5e-24   87.1   0.0    1.3  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    2.1e-16   60.0   0.0    3.4e-16   59.3   0.0    1.3  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 
    0.00025   21.7   0.0    0.00051   20.7   0.0    1.5  1  NAD_binding_3   Homoserine dehydrogenase, NAD binding domain
     0.0034   17.8   0.0     0.0063   16.9   0.0    1.4  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   3.4e-28   1.5e-24       1     119 [.       5     121 ..       5     122 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 3.4e-28
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS-S CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPlat 97 
                   +rv+++G+G++ + +++pl   +++  + a+ ++da + +  a+  gv+++s   +ll+dp+id+v++atpn+th+ lakaaleagkhv+++KP++ 
    CTQ28402.1   5 IRVGLVGFGYASKTFHAPLIGGTPGMALKAVASSDADKVH--ADWPGVKVMSAPGDLLDDPDIDLVVIATPNDTHFPLAKAALEAGKHVVVDKPFTV 99 
                   69*********888888*******************9999..89***************************************************** PP

                   SHHHHHHHHHHHHHHTS-EEEE CS
  GFO_IDH_MocA  98 tveeakelvelaekkgklvsvg 119
                   t+++a+el  la++ g+++sv 
    CTQ28402.1 100 TLSQARELESLAKHCGRILSVF 121
                   ******************9996 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   7.6e-20   3.4e-16       3     116 .]     136     241 ..     135     241 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 7.6e-20
                     HHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSHHCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEEEEEEEEEETTEE CS
  GFO_IDH_MocA_C   3 lIengklGevvsvdvwtldtragaeakkrwkrrkkksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaavmsvlnlekgsge 97 
                     lI++g+lGev +++++++++r++ + ++r++++  +++G+++dl+ H +D++ +LfG p s +++l   +q+++ a+++d++   ++ l++ + +
      CTQ28402.1 136 LINEGQLGEVCYFESHFDRFRPQVRQRWREQAG--PGSGIWYDLAPHLLDQVVVLFGLPVSITVDL---AQLRPGAQSTDYF---HAVLAYPQRR 222
                     8************99999999999999999988..7******************************...8************...9********* PP

                     EEEEEECCTSSSEEEEEEE CS
  GFO_IDH_MocA_C  98 vitlesgvskglsiryvie 116
                     v ++++  +  +s r++++
      CTQ28402.1 223 VVLHGTLLAAAESARFIVH 241
                     ******9999999999976 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.1e-07   0.00051      22     112 ..      30     116 ..      16     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.1e-07
                    EEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGGG-HHHHHHHTSSSTTS-- CS
  NAD_binding_3  22 lelvavadrdsllskdrkallasealtldlddliahldpdvvVEcasseavaelvlkaLkagkdvvtankgaladealyeeLreaaeanga 112
                    + l+ava +d   +++  a+ +  ++++   dl++++d+d+vV +++ +    l+ +aL+agk+vv+     ++ + + +eL ++a+  g+
     CTQ28402.1  30 MALKAVASSD---ADKVHADWPGVKVMSAPGDLLDDPDIDLVVIATPNDTHFPLAKAALEAGKHVVVDKPFTVT-LSQARELESLAKHCGR 116
                    5688999999...677778889********************************************97666666.7788888888887666 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.4e-06    0.0063       1      95 [.       6      94 ..       6      99 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.4e-06
                    EEEEETTTSHHHHHHHHHHHC.TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTS.EEEE CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLee.hpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeagv.kviD 95
                    +v++vG  Gy  + +   L    p + l +++ss+     k+++  +    g ++   + d  +  ++d+v+ a+p++++ +la++++eag  +v+D
      CTQ28402.1  6 RVGLVG-FGYASKTFHAPLIGgTPGMALKAVASSDA---DKVHADWP----GVKVMSAPGDLLDDPDIDLVVIATPNDTHFPLAKAALEAGKhVVVD 94
                    688888.88999888665555588888888777666...44444445....3334344446677789************************955665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2817.54
//
Query:       CTQ28403.1  [L=456]
Description: Aryl-phospho-beta-D-glucosidase BglC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.2e-173  575.2   0.0   8.1e-173  575.0   0.0    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  575.0   0.0  4.5e-177  8.1e-173       4     452 ..       3     453 ..       1     454 [. 0.96

  Alignments for each domain:
  == domain 1  score: 575.0 bits;  conditional E-value: 4.5e-177
                    GS-TT-EEEEE--HHHHH--TTSTT---BHHHHHHHHGGGSTTS---SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTSTT---HHHHHH CS
  Glyco_hydro_1   4 tfpedFlwgaataayqiEGawnedGkgesiwDtftetpgkvlegsngdvacdsYhrykeDvallkelgvkayrfSisWpRilPkGegeinekGlay 99 
                     fp++Flwgaataayq+EG+ ++dGkg+siwD++++ pg ++eg++gd+a+d+Yhr++eDval++e+g+++yrfSisWpR+lP+G+g++ne+G+++
     CTQ28403.1   3 AFPHNFLWGAATAAYQVEGGHDADGKGPSIWDIYSHLPGTTFEGTTGDIAVDHYHRFREDVALMAEMGLQSYRFSISWPRLLPAGRGKVNEAGVQF 98 
                    7*********************************************************************************************** PP

                    HHHHHHHHHHTT-EEEEEEESS--BHHHHHH-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHTSS-STT-S-TTTHHHHHHHH CS
  Glyco_hydro_1 100 YerLidelleagieplvTlyHwdlPqaLqdeGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgyltgefaPgkkdleaayeaaHn 195
                    Y+ Lidell+++iep++TlyHwdlPqaLqdeGgwe r++ +af eya+++++rfg +vklw+TfnE  v+  +gy+ g ++P ++d ++a++a H+
     CTQ28403.1  99 YSDLIDELLAHNIEPMITLYHWDLPQALQDEGGWEARTTAEAFAEYARLCYARFGSRVKLWATFNETIVFIGHGYINGLHPPAVRDPARAIQACHH 194
                    ************************************************************************************************ PP

                    HHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG..S----HHHHHHH.TT--SEE CS
  Glyco_hydro_1 196 lllaharavklykevaqkgkigivlnlslaeplseseedkeaaeraleflngwfldpvvkGdYpeemkellrergalpeiteedkell.kgkadfl 290
                    +++aha avk+++e+a  g+ig v  l+ ++pl++se+d++a+e a+ ++++w  dpv+kG+Yp+++  + +     p +  +d +ll  +  df+
     CTQ28403.1 195 VFIAHALAVKAFREMAVAGEIGFVNVLQPHTPLTDSEADIKATELADAIHTHWLYDPVLKGTYPADLLAQTQALWGVPRFAPGDDALLrDNRCDFI 290
                    ****************************************************************************************66789*** PP

                    EEEEEEEEEEEE--...-STT---..SSGGGGG-SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE----EE-BSSSHHH--HHHHHHHH CS
  Glyco_hydro_1 291 glnyYtsrlvknkeseeaslskte..ekkleeevdpslpktdigwiiepeglrkllellkkeYqklpiyiteNGlgakdeieegkveDdkRidYlk 384
                    glnyY +++v++++  e+ +  +   e  +    +p+ + t++gw+i p+gl + ++++k +Y+++piyiteNGlgakd i++g+v Dd RidYl 
     CTQ28403.1 291 GLNYYRRETVSAQPP-EIATGGEPgvEGLFYFVRNPQSTYTEWGWEIWPQGLTDGIMMIKARYGDIPIYITENGLGAKDPIIDGEVVDDPRIDYLS 385
                    *************94.444444430033455666************************************************************** PP

                    HHHHHHHHHHHTT--EEEEEEE-SB----GGGTTSEE--SEEEETTTTTEEEE-HHHHHHHHHHH-SS CS
  Glyco_hydro_1 385 ehlnevkkaiedgvdlkgYvawsllDnfewaegyskrfGlvyvdrnetleRtpkkSakwykeviekng 452
                    +h+ +++ka+  g+d++gY+ ws++D+++w++gy+k++G+vyvd++++l R++kkS++wyk+vi+++g
     CTQ28403.1 386 SHIGALEKALALGADVRGYYPWSFIDLLSWLNGYQKQYGFVYVDHQQNLARKRKKSFYWYKSVIASHG 453
                    ****************************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3599.68
//
Query:       CTQ28404.1  [L=89]
Description: Cnu protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-28   97.2   0.0    6.7e-28   96.8   0.0    1.2  1  HHA           Haemolysin expression modulating protein
  ------ inclusion threshold ------
      0.034   13.3   0.5       0.04   13.0   0.5    1.1  1  NAD_synthase  NAD synthase


Domain annotation for each model (and alignments):
>> HHA  Haemolysin expression modulating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   7.5e-32   6.7e-28       1      57 []      26      86 ..      26      86 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 7.5e-32
                HHHHT---HHHHHHHHHHHHHHS-HH.HHHHHHHHHTHHHHHHHT.TS---..S--THHHH CS
         HHA  1 lrlRrcssidtlEkvieklkyeltdd.EllefysAaDHRrAELvs.gkLyD..kvPksvWk 57
                l++R++ss+++lEk++++l+y+ltd  E++++y+AaDHRrAELvs gkL+D  +vPksvW+
  CTQ28404.1 26 LKFRKISSLESLEKLFDHLNYSLTDTqEIVNMYRAADHRRAELVSgGKLFDvgQVPKSVWR 86
                79**********************999******************99*************7 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.5   4.5e-06      0.04     188     240 ..      12      66 ..       2      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.5e-06
                   HHHHSS-HHHHHHHHT..HSSSS...HHHHHTTT--HHHHHHHHHHHHHTGGGGS CS
  NAD_synthase 188 eeeLgikYdelDeiLk..lvekkkspeeiikekelpaevvekieklvkksehKrk 240
                   + +++ k  +lD +Lk   +   +s e++ ++++++ + +++i+++++  +h+r 
    CTQ28404.1  12 DYKMDTKMTVLDYLLKfrKISSLESLEKLFDHLNYSLTDTQEIVNMYRAADHRRA 66 
                   45799999********777888899999************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 708.63
//
Query:       CTQ28405.1  [L=146]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-40  136.5  14.7    9.2e-40  136.4  14.7    1.0  1  DUF2569        Protein of unknown function (DUF2569)
  ------ inclusion threshold ------
        4.4    5.5  11.2          5    5.3  11.2    1.0  1  DUF2070        Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> DUF2569  Protein of unknown function (DUF2569)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4  14.7     1e-43   9.2e-40       2     143 .]       7     144 ..       6     144 .. 0.99

  Alignments for each domain:
  == domain 1  score: 136.4 bits;  conditional E-value: 1e-43
     DUF2569   2 krigGwLllpligLilsllsialelidalkalfsleewstlknleslltlllileiitnialvafsilllvlffkrrksfPklyiifllanlvlalida 100
                 +rigGwLl+pl++L++ lls++l+l+ + +al+s+++++ l + ++  ++l++ ++++++a+++++++l+++ffkrr+++Pk+yii+ll++l+la++ a
  CTQ28405.1   7 ERIGGWLLAPLAWLLVALLSASLSLLFFANALMSPQTYTLLRAMSAGHMALWVASLLFALAMWYYTLWLTIAFFKRRSVVPKHYIIWLLITLLLAIK-A 104
                 79***********************************************************************************************.* PP

     DUF2569 101 lllspifekldaqairellqsvlaaaiwipYflkSkRVketFv 143
                 +++sp+   +d  a+r+ll+++laaa++ pYf++S+RVk+tFv
  CTQ28405.1 105 FAFSPV---SDVLALRQLLFPLLAAALLAPYFRRSQRVKRTFV 144
                 ******...*********************************8 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  11.2   0.00056         5      72     172 ..      23     130 ..       2     142 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.00056
     DUF2070  72 lflalltelivviisllaillsall...qalvllalvlslalvfalrllvlvavsdesllkavlpaliqpllailllvly....fspesfllllllsli 163
                 ++l++   l++++  l++  +++ll   +a  +  +v sl +++a+ +  l+++     +++v+p   +  l+i ll+++    fsp s +l+l  +l+
  CTQ28405.1  23 ALLSASLSLLFFANALMSPQTYTLLramSAGHMALWVASLLFALAMWYYTLWLTIAFFKRRSVVPKHYIIWLLITLLLAIkafaFSPVSDVLALRQLLF 121
                 444444444444444444455545578777788889999************************887776666666666666666455555555555555 PP

     DUF2070 164 falavylfi 172
                  +la++l+ 
  CTQ28405.1 122 PLLAAALLA 130
                 555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1150.14
//
Query:       CTQ28406.1  [L=193]
Description: putative inner membrane subunit of an electron transport system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-60  203.1  23.5    3.5e-60  202.9  23.5    1.0  1  Rnf-Nqr   Rnf-Nqr subunit, membrane protein


Domain annotation for each model (and alignments):
>> Rnf-Nqr  Rnf-Nqr subunit, membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.9  23.5     2e-64   3.5e-60       2     173 ..       5     190 ..       4     191 .. 0.97

  Alignments for each domain:
  == domain 1  score: 202.9 bits;  conditional E-value: 2e-64
                 -HHHHHHHHHTS-TTTTT--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHH------.....---HHHHHHHHHHHHHHHHHHT------THHHH CS
     Rnf-Nqr   2 lkillsgilkeNpvlvqflGiCpflavskklknalgmglavtfvlvlsnlvisllrklipk.....klriivfilviAalvtlvelvlkaflpslykaL 95 
                 l +++ ++l++N+vlv+flG+Cpf++vskkl++a+gmgla+tfv++l++++++l+ ++i+      +lr+++filviA++v+++e+v+++++p+ly+ L
  CTQ28406.1   5 LLLFIGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLATTFVMTLASICAWLIDTWILIplnlvYLRTLAFILVIAVVVQFTEMVVRKTSPALYRLL 103
                 6799******************************************************99999************************************ PP

                 HHHHHHHHS-HHHHHHHHT-----.---THHHHHHHHHHHHHHHHHHHHHHHHHHT........S-SSS.-----SHHHHHHHHHHH CS
     Rnf-Nqr  96 giflpLivvNCiilgraeafaskn.svleslldglgsglGftlalvllaairellg........kGtliglilagllagaFlglggl 173
                 giflpLi++NC++lg+a+++++   ++l+s+l+g+++++Gf l++vl+aaire+l         +G +i+li+agl+++aF+g++gl
  CTQ28406.1 104 GIFLPLITTNCAVLGVALLNINLGhNFLQSALYGFAAAVGFSLVMVLFAAIRERLVvadvpapfRGNAIALITAGLMSLAFMGFSGL 190
                 ********************96547************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1520.40
//
Query:       CTQ28407.1  [L=192]
Description: putative iron-sulfur protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-16   59.2  15.6    3.3e-16   59.2  15.6    1.9  2  Fer4_21   4Fe-4S dicluster domain
      5e-12   45.3   3.6      5e-12   45.3   3.6    2.2  1  FeS       Putative Fe-S cluster
    1.1e-10   40.8  25.5    4.3e-06   26.3   7.3    3.2  3  Fer4      4Fe-4S binding domain
    7.2e-09   35.7  32.1      1e-06   28.8  15.1    2.4  2  Fer4_9    4Fe-4S dicluster domain
    3.2e-08   34.0  17.2    0.00024   21.6   1.1    2.8  2  Fer4_7    4Fe-4S dicluster domain
    5.2e-07   29.5  27.2    1.1e-05   25.3   5.3    3.2  3  Fer4_6    4Fe-4S binding domain
    6.1e-07   30.3  19.0     0.0002   22.2   2.5    2.9  3  Fer4_16   4Fe-4S double cluster binding domain
    9.7e-06   25.4  21.3    0.00019   21.3   2.8    3.3  3  Fer4_2    4Fe-4S binding domain
    9.7e-06   25.6  15.4    9.7e-06   25.6  15.4    3.1  3  Fer4_10   4Fe-4S dicluster domain
     0.0067   17.3   4.7     0.0067   17.3   4.7    3.4  3  Fer4_3    4Fe-4S binding domain
     0.0094   16.4  21.1       0.13   12.9   3.0    3.4  3  Fer4_4    4Fe-4S binding domain
  ------ inclusion threshold ------
      0.032   15.1   0.4      0.032   15.1   0.4    2.6  3  Fer4_22   4Fe-4S dicluster domain
       0.12   13.2  17.3       0.56   11.0   3.8    3.3  2  Fer4_15   4Fe-4S single cluster domain
       0.29   11.7  23.6       0.32   11.6   3.6    3.1  3  Fer4_17   4Fe-4S dicluster domain
        1.8    8.8  15.1        2.5    8.3   3.5    2.4  3  Fer4_18   4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.5       2.1   2.5e+03      10      19 ..      48      58 ..      45      74 .. 0.61
   2 !   59.2  15.6   2.7e-19   3.3e-16       1      58 [.     110     163 ..     110     164 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.1
     Fer4_21 10 gCgkC.liaCe 19
                +Cg+C +  C+
  CTQ28407.1 48 QCGQCgYPGCR 58
                57777333454 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 2.7e-19
     Fer4_21   1 AridedkCigCgkCliaCedtshqaieidaktvlkvvedeCvGCnlCssvCPvedcie 58 
                 A+ide +CigC+kC++aC+   ++ai ++++++++v++d C+GCnlC+++CP+ +ci+
  CTQ28407.1 110 AVIDEPNCIGCTKCIQACP---VDAIVGATRAMHTVMSDLCTGCNLCVAPCPT-QCIS 163
                 89*****************...8*****************************6.**97 PP

>> FeS  Putative Fe-S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   3.6   4.2e-15     5e-12       1      33 []      44      76 ..      44      76 .. 0.96

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 4.2e-15
         FeS  1 LPgtNCgaCGypgCmafAealvegeaqledCpp 33
                LP+++Cg+CGypgC+++Aea+   ++++++C p
  CTQ28407.1 44 LPQSQCGQCGYPGCRPYAEAVGVQGEKINRCAP 76
                9********************99999*****76 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.5      0.48   5.8e+02      11      14 ..      49      52 ..      46      54 .. 0.68
   2 !   26.3   7.3   3.6e-09   4.3e-06       2      23 ..     111     132 ..     110     133 .. 0.94
   3 !   24.2   3.6   1.6e-08     2e-05       2      24 .]     141     163 ..     140     163 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.48
                -THH CS
        Fer4 11 CGaC 14
                CG+C
  CTQ28407.1 49 CGQC 52
                7777 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 3.6e-09
                 EEETTTSSS-THHHHHSTTTEE CS
        Fer4   2 videekCigCGaCvevCPvgAI 23 
                 vide  CigC +C+++CPv+AI
  CTQ28407.1 111 VIDEPNCIGCTKCIQACPVDAI 132
                 89*******************9 PP

  == domain 3  score: 24.2 bits;  conditional E-value: 1.6e-08
                 EEETTTSSS-THHHHHSTTTEEE CS
        Fer4   2 videekCigCGaCvevCPvgAIt 24 
                 ++  ++C+gC++Cv  CP+ +I+
  CTQ28407.1 141 TVMSDLCTGCNLCVAPCPTQCIS 163
                 5788*****************95 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   8.9   6.3e-07   0.00075       4      51 .]      48     132 ..      46     132 .. 0.93
   2 !   28.8  15.1   8.5e-10     1e-06       1      51 []     116     162 ..     116     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.3e-07
      Fer4_9   4 gCgaC.veaC.pagvvvedaaerkarlraase...................................eaCigCgaCveaCpkgai 51 
                 +Cg+C  + C p+  +v+ ++e+++r+   +e                                    +CigC +C++aCp +ai
  CTQ28407.1  48 QCGQCgYPGCrPYAEAVGVQGEKINRCAPGGEgvmlkiaallnvdpqpvdgdaqeaeparmlavidePNCIGCTKCIQACPVDAI 132
                 799997888988889999999999999998889**********************************99*************987 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 8.5e-10
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraaseeaCigCgaCveaCpkgai 51 
                 +C+gC++C++aCp +++v+   +    +       C+gC+ Cv+ Cp+++i
  CTQ28407.1 116 NCIGCTKCIQACPVDAIVGATRAMHTVMSD----LCTGCNLCVAPCPTQCI 162
                 6****************9988888877755....6*************987 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   9.1   9.5e-06     0.011      20      52 .]      99     131 ..      47     131 .. 0.54
   2 !   21.6   1.1     2e-07   0.00024       2      32 ..     147     177 ..     146     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.5e-06
      Fer4_7  20 deeenekgtekveidpekClgCgaCvavCPtga 52 
                 d +e e+ ++ ++id+ +C+gC++C+++CP++a
  CTQ28407.1  99 DAQEAEPARMLAVIDEPNCIGCTKCIQACPVDA 131
                 22333334455699999*************997 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 2e-07
      Fer4_7   2 CigCgaCvaaCpvkaieldeeenekgtekve 32 
                 C+gC+ Cva Cp+++i+l +++  ++t k++
  CTQ28407.1 147 CTGCNLCVAPCPTQCISLVPVATTPETWKWD 177
                 ******************9998777766665 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.2       1.6   1.9e+03       8      13 ..      48      53 ..      46      59 .. 0.61
   2 !   25.3   5.3   9.2e-09   1.1e-05       2      24 .]     110     132 ..     109     132 .. 0.96
   3 !   16.0   5.5     8e-06    0.0096       4      24 .]     142     162 ..     141     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.6
      Fer4_6  8 kCigCg 13
                 C +Cg
  CTQ28407.1 48 QCGQCG 53
                455554 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 9.2e-09
      Fer4_6   2 veidpdkCigCgdCvrvCPegai 24 
                 ++id+ +CigC +C+ +CP +ai
  CTQ28407.1 110 AVIDEPNCIGCTKCIQACPVDAI 132
                 79******************998 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 8e-06
      Fer4_6   4 idpdkCigCgdCvrvCPegai 24 
                 +  d+C+gC+ Cv+ CP++ i
  CTQ28407.1 142 VMSDLCTGCNLCVAPCPTQCI 162
                 678***************986 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.2       4.8   5.7e+03       1       6 [.      48      53 ..      47      59 .. 0.70
   2 !   22.2   2.5   1.6e-07    0.0002       1      21 [.     116     136 ..     116     143 .. 0.87
   3 !   19.5   1.3   1.1e-06    0.0014       2      36 ..     147     181 ..     146     191 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4.8
     Fer4_16  1 rCgtCg 6 
                +Cg+Cg
  CTQ28407.1 48 QCGQCG 53
                477776 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 1.6e-07
     Fer4_16   1 rCgtCgkCaevCPtnaikekk 21 
                 +C++C+kC+++CP++ai + +
  CTQ28407.1 116 NCIGCTKCIQACPVDAIVGAT 136
                 6****************9874 PP

  == domain 3  score: 19.5 bits;  conditional E-value: 1.1e-06
     Fer4_16   2 CgtCgkCaevCPtnaikekkekeiearecisy..nta 36 
                 C++C+ C+  CPt++i+    +++ ++e+ ++  +t+
  CTQ28407.1 147 CTGCNLCVAPCPTQCISLV--PVATTPETWKWdlHTI 181
                 *****************99..8888888887755554 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.8      0.92   1.1e+03      10      14 ..      49      53 ..      44      59 .. 0.67
   2 !   21.3   2.8   1.6e-07   0.00019       3      21 ..     110     128 ..     108     129 .. 0.92
   3 !   14.0   3.4   3.4e-05      0.04       7      22 .]     144     159 ..     138     159 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.92
      Fer4_2 10 CigCg 14
                C +Cg
  CTQ28407.1 49 CGQCG 53
                66666 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 1.6e-07
      Fer4_2   3 vvvdtdrCigCgaCvsaCP 21 
                 +v+d+ +CigC +C++aCP
  CTQ28407.1 110 AVIDEPNCIGCTKCIQACP 128
                 589**************** PP

  == domain 3  score: 14.0 bits;  conditional E-value: 3.4e-05
      Fer4_2   7 tdrCigCgaCvsaCPa 22 
                 +d C+gC+ Cv  CP+
  CTQ28407.1 144 SDLCTGCNLCVAPCPT 159
                 799*******999**7 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.4      0.49   5.9e+02       6      13 ..      46      53 ..      41      74 .. 0.78
   2 !   25.6  15.4   8.1e-09   9.7e-06       2      56 .]     110     158 ..     109     158 .. 0.83
   3 !   11.9   6.0   0.00016      0.19       5      22 ..     143     160 ..     139     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.49
     Fer4_10  6 ddtCirCg 13
                +++C +Cg
  CTQ28407.1 46 QSQCGQCG 53
                56777777 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 8.1e-09
     Fer4_10   2 vvidddtCirCgkCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 +vid+  Ci+C+kC +aCP+     +a+  a++  +    ++ Ctgc  Cv+ CP
  CTQ28407.1 110 AVIDEPNCIGCTKCIQACPV-----DAIVGATRAMHTVM-SDLCTGCNLCVAPCP 158
                 689*****************.....66666666555554.788***********9 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00016
     Fer4_10   5 dddtCirCgkCvkaCPad 22 
                  +d C++C+ Cv+ CP++
  CTQ28407.1 143 MSDLCTGCNLCVAPCPTQ 160
                 5789************94 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.7         2   2.4e+03       3       7 ..      48      52 ..      47      54 .. 0.83
   2 !   17.3   4.7   5.6e-06    0.0067       1      15 []     117     131 ..     117     131 .. 0.98
   3 ?    5.3  10.8     0.038        46       1      13 [.     147     159 ..     147     161 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 2
      Fer4_3  3 gCgaC 7 
                +Cg+C
  CTQ28407.1 48 QCGQC 52
                59999 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 5.6e-06
      Fer4_3   1 CtgCgaCvevCPvgA 15 
                 C+gC  C ++CPv+A
  CTQ28407.1 117 CIGCTKCIQACPVDA 131
                 *************98 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.038
      Fer4_3   1 CtgCgaCvevCPv 13 
                 CtgC++Cv  CP+
  CTQ28407.1 147 CTGCNLCVAPCPT 159
                 ************7 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.8      0.58     7e+02       6      10 ..      48      52 ..      47      54 .. 0.91
   2 !   12.9   3.0   0.00011      0.13       3      16 ..     116     129 ..     114     133 .. 0.93
   3 !   12.3   2.9   0.00016       0.2       2      17 .]     145     160 ..     144     160 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.58
      Fer4_4  6 gCgsC 10
                +Cg+C
  CTQ28407.1 48 QCGQC 52
                7**** PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00011
      Fer4_4   3 rCigCgsCvaaCPq 16 
                 +CigC +C+ aCP+
  CTQ28407.1 116 NCIGCTKCIQACPV 129
                 7************7 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00016
      Fer4_4   2 erCigCgsCvaaCPqg 17 
                 + C+gC  Cva CP++
  CTQ28407.1 145 DLCTGCNLCVAPCPTQ 160
                 88************86 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.4       9.8   1.2e+04       4       9 ..      48      53 ..      44      61 .. 0.69
   2 ?   15.1   0.4   2.6e-05     0.032      76      95 ..     111     130 ..     102     131 .. 0.84
   3 ?    6.7   2.9     0.011        13      76      95 ..     141     160 ..     134     162 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 9.8
     Fer4_22  4 sCgaCt 9 
                +Cg+C 
  CTQ28407.1 48 QCGQCG 53
                456654 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.6e-05
     Fer4_22  76 kfgesgCvGCgRCieacpvk 95 
                  ++e  C+GC +Ci+acpv+
  CTQ28407.1 111 VIDEPNCIGCTKCIQACPVD 130
                 568899***********985 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.011
     Fer4_22  76 kfgesgCvGCgRCieacpvk 95 
                 ++ +  C+GC+ C++ cp++
  CTQ28407.1 141 TVMSDLCTGCNLCVAPCPTQ 160
                 5567889******9999976 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.8   0.00047      0.56       2      19 ..     111     128 ..     110     143 .. 0.81
   2 ?    6.0   5.8     0.017        20       6      20 ..     145     159 ..     141     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00047
     Fer4_15   2 vvDrdaCigcglCvaeap 19 
                 v+D+ +Cigc  C++++p
  CTQ28407.1 111 VIDEPNCIGCTKCIQACP 128
                 69***************7 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.017
     Fer4_15   6 daCigcglCvaeape 20 
                 d+C+gc+lCva +p+
  CTQ28407.1 145 DLCTGCNLCVAPCPT 159
                 99*********9985 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  12.1     0.076        91       2      58 ..      49     129 ..      47     131 .. 0.51
   2 ?   10.1   3.0   0.00077      0.92       1      15 [.     116     130 ..     116     143 .. 0.72
   3 ?   11.6   3.6   0.00027      0.32      42      58 ..     143     159 ..     131     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.076
     Fer4_17   2 CiqCgy..Clp....eCpsyeaydne.pk..kllraakl..........glleeaeke.....eka..slCieCgeCerkCPq 58 
                 C qCgy  C+p    +  ++e+++ + p    ++ ++++          g+ +ea  e      ++   +Ci+C +C ++CP 
  CTQ28407.1  49 CGQCGYpgCRPyaeaVGVQGEKINRCaPGgeGVMLKIAAllnvdpqpvdGDAQEA--EparmlAVIdePNCIGCTKCIQACPV 129
                 8888888888833222222222332222233455555555666776554222222..13343434432679999999999996 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00077
     Fer4_17   1 rCiqCgyClpeCpsy 15 
                 +Ci+C  C+++Cp  
  CTQ28407.1 116 NCIGCTKCIQACPVD 130
                 588888888888765 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00027
     Fer4_17  42 kaslCieCgeCerkCPq 58 
                 + +lC++C++C++ CP 
  CTQ28407.1 143 MSDLCTGCNLCVAPCPT 159
                 5589***********97 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.6    0.0024       2.9      59      73 ..     115     129 ..      98     135 .. 0.77
   2 ?    8.3   3.5    0.0021       2.5      60      74 ..     116     130 ..     106     144 .. 0.73
   3 ?    5.8   3.9     0.012        15      57      74 ..     143     160 ..     132     164 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0024
     Fer4_18  59 gdcidcescvkvcPt 73 
                  +ci c +c++ cP+
  CTQ28407.1 115 PNCIGCTKCIQACPV 129
                 578888888888886 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0021
     Fer4_18  60 dcidcescvkvcPtg 74 
                 +ci c +c++ cP++
  CTQ28407.1 116 NCIGCTKCIQACPVD 130
                 677777777777764 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.012
     Fer4_18  57 gagdcidcescvkvcPtg 74 
                  +  c+ c+ cv+ cPt+
  CTQ28407.1 143 MSDLCTGCNLCVAPCPTQ 160
                 4556************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1484.73
//
Query:       CTQ28408.1  [L=719]
Description: putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-46  156.9   1.6    4.5e-46  156.5   0.0    2.1  2  Complex1_51K     Respiratory-chain NADH dehydrogenase 51 Kd s
      4e-33  113.4   0.0    9.6e-33  112.2   0.0    1.7  1  RnfC_N           RnfC Barrel sandwich hybrid domain
    3.1e-13   49.3   0.2    7.4e-13   48.2   0.2    1.7  1  SLBB             SLBB domain
    8.1e-09   35.9   7.6    2.5e-08   34.4   7.6    1.9  1  Fer4_7           4Fe-4S dicluster domain
    2.8e-08   33.2  13.8     0.0002   21.1   3.5    2.6  2  Fer4             4Fe-4S binding domain
    6.9e-08   32.5   9.8    2.9e-07   30.5  10.0    2.0  2  Fer4_10          4Fe-4S dicluster domain
    2.1e-06   27.8  10.0    7.9e-06   26.0  10.0    2.0  1  Fer4_9           4Fe-4S dicluster domain
      4e-06   27.2  19.5    1.2e-05   25.6   9.0    2.5  2  Fer4_8           4Fe-4S dicluster domain
    5.9e-06   26.1  14.9     0.0049   16.9   3.1    2.6  2  Fer4_2           4Fe-4S binding domain
    1.3e-05   26.0  12.2      0.014   16.3   1.9    3.5  2  Fer4_16          4Fe-4S double cluster binding domain
    1.4e-05   25.5  11.2     0.0002   21.8  10.2    2.9  2  Fer4_17          4Fe-4S dicluster domain
    2.4e-05   24.5   8.7      0.037   14.5   0.9    2.6  2  Fer4_4           4Fe-4S binding domain
    0.00017   21.6   6.7    0.00057   20.0   6.7    1.9  1  Fer4_21          4Fe-4S dicluster domain
    0.00019   21.0   0.0    0.00046   19.7   0.0    1.6  1  NQRA             Na(+)-translocating NADH-quinone reductase s
    0.00055   19.9  15.4      0.026   14.6   3.2    2.6  2  Fer4_6           4Fe-4S binding domain
    0.00075   19.7   9.3     0.0062   16.7   0.6    3.0  2  Fer4_18          4Fe-4S dicluster domain
     0.0022   18.8   5.0       0.13   13.2   0.6    2.6  2  Fer4_22          4Fe-4S dicluster domain
     0.0056   17.2  13.3       0.04   14.5   0.9    3.6  2  Fer4_13          4Fe-4S single cluster domain of Ferredoxin I
  ------ inclusion threshold ------
       0.02   15.5   0.0      0.051   14.2   0.0    1.7  1  NQRA_SLBB        NQRA C-terminal domain
      0.033   15.1  19.3      0.066   14.2   3.7    2.8  2  Fer4_3           4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.0     5e-49   4.5e-46       1     151 [.     139     283 ..     139     284 .. 0.98
   2 ?   -2.6   0.5       4.8   4.3e+03      66      96 ..     475     505 ..     435     527 .. 0.56

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 5e-49
  Complex1_51K   1 vkeagivGrGGagfPthvKlkakakkkkkylivNaaEcEPgltkDrllmreepheileGlkiaaealgaekgvigvrdekpeaiealekalaeakaa 97 
                   +++ g+ G+GGagfPt+ Kl+   + k+k+li+NaaEcEP++t+D++lm++ + +i+eG++i+a++l+ e+++ig++d+kp+ai++l++ l +a+  
    CTQ28408.1 139 IHQFGVAGLGGAGFPTGSKLRGGGD-KIKTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPEEVLIGIEDNKPQAISMLRAVLCDAHG- 233
                   7899********************9.89******************************************************************87. PP

  Complex1_51K  98 glldievvklagkYpaGeekaLiesltgrevprgkppadvgvvvnNveTlaavy 151
                       i+++ +++kYp+G +k+L++ ltg++vp+g+  +d+gv+++Nv+T++av+
    CTQ28408.1 234 ----ISLRVIPTKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVK 283
                   ....************************************************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.8
  Complex1_51K  66 algaekgvigvrdekpeaiealekalaeaka 96 
                   a + +k+ +   ++++eai+a  ++++++++
    CTQ28408.1 475 AERHKKAAVQPAAKDQEAISAALARVRDKQR 505
                   3333344444444455555554444444444 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.0   1.1e-35   9.6e-33       1     101 []      14     115 ..      14     115 .. 0.96

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 1.1e-35
      RnfC_N   1 ltfkgGvhppenkelskekpieklplpkelvlplsqhiGapakplvkvgdkVlkGqkiaeaegfvsapvhasvsGtVkaiekrlvahgsgve..avvie 97 
                 ++f+gG+hppe+k++s+ +p+++++lp+++v+pl+qhiGa+++++vkvgd+Vl+Gq +++  g  ++pvha++sGt+ ai+++++ah+s++   +v+i+
  CTQ28408.1  14 WDFNGGIHPPEMKTQSNGTPLRQVSLPQRFVIPLKQHIGAEGELCVKVGDRVLRGQPLTRGWGR-MLPVHAPTSGTIAAIAPHTTAHPSALAemSVIID 111
                 79***********************************************************998.8***********************96334***** PP

      RnfC_N  98 nDge 101
                  Dge
  CTQ28408.1 112 ADGE 115
                 *986 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.2   8.3e-16   7.4e-13       1      57 [.     296     344 ..     296     345 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 8.3e-16
                 EEEEESS.BSS-EEEEEETT-BHHHHHHTTT-SBSS.........-EEEE-SSSSS-- CS
        SLBB   1 vVtVtGe.VkrPgnyevpigttlsdlieqaGGltddadlksvnLarlavipgGpmmgi 57 
                 vVt+tGe V+rPgn+++++gt++++l+++aG  + ++           vi+gGp mg+
  CTQ28408.1 296 VVTLTGEaVTRPGNVWARLGTPVRHLLNDAGFCPSAEP---------MVIMGGPLMGF 344
                 7*************************************.........8*********8 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   7.6   2.7e-11   2.5e-08       2      52 .]     377     430 ..     376     430 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.7e-11
      Fer4_7   2 CigCgaCvaaCpvkaield...eeenekgtekveidpekClgCgaCvavCPtga 52 
                 Ci C aC++aCp++ +  +    ++ ++  + ++++  +C+ CgaC+ vCP+++
  CTQ28408.1 377 CIRCSACADACPADLLPQQlywFSKGQQHDKATAHNLADCIECGACAWVCPSNI 430
                 ************9988866444333344446678899**************986 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.6   4.2e-06    0.0038       8      21 ..     377     390 ..     373     392 .. 0.90
   2 !   21.1   3.5   2.2e-07    0.0002       5      22 ..     413     430 ..     410     431 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.2e-06
                 SSS-THHHHHSTTT CS
        Fer4   8 CigCGaCvevCPvg 21 
                 Ci+C aC+++CP +
  CTQ28408.1 377 CIRCSACADACPAD 390
                 ************87 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 2.2e-07
                 TTTSSS-THHHHHSTTTE CS
        Fer4   5 eekCigCGaCvevCPvgA 22 
                   +Ci CGaC+ vCP + 
  CTQ28408.1 413 LADCIECGACAWVCPSNI 430
                 568************985 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5  10.0   3.3e-10   2.9e-07       6      56 .]     374     427 ..     371     427 .. 0.91
   2 !   15.4   2.6   1.6e-05     0.015       5      29 ..     412     443 ..     408     459 .. 0.67

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 3.3e-10
     Fer4_10   6 ddtCirCgkCvkaCPadl...tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 ++ CirC +C +aCPadl   + +  ++ +  ++a  +++ +C++cgaC+ +CP
  CTQ28408.1 374 EKGCIRCSACADACPADLlpqQLYWFSKGQQHDKATAHNLADCIECGACAWVCP 427
                 678***************88888888899999999999***************9 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.6e-05
     Fer4_10   5 dddtCirCgkCvkaCPadl...........tsvgak 29 
                 +   Ci+Cg+C  +CP+++           +    +
  CTQ28408.1 412 NLADCIECGACAWVCPSNIplvqyfrqekaE----I 443
                 6678*************88887776633320....2 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0  10.0   8.8e-09   7.9e-06       2      49 ..     377     429 ..     376     430 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 8.8e-09
      Fer4_9   2 CtgCgaCveaCpagvv..ve...daaerkarlraase...eaCigCgaCveaCpkg 49 
                 C++C aC +aCpa++   +    +++++ ++ +   +    +Ci+CgaC+ +Cp++
  CTQ28408.1 377 CIRCSACADACPADLLpqQLywfSKGQQHDKAT---AhnlADCIECGACAWVCPSN 429
                 ***********7777633330003444444444...255699************98 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   9.0   1.4e-08   1.2e-05       4      65 .]     376     430 ..     373     430 .. 0.81
   2 !   15.9   2.7   1.5e-05     0.013       3      34 ..     414     462 ..     412     494 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.4e-08
      Fer4_8   4 kCieCgaCqsaCpvlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvgi 65 
                  Ci+C+aC +aCp+    ++    ++g++ + + + ++      l  C +cgaC+ vCp +i
  CTQ28408.1 376 GCIRCSACADACPADLLPQQLYWFSKGQQHD-KATAHN------LADCIECGACAWVCPSNI 430
                 6************666666666666666666.667767......9**************997 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.5e-05
      Fer4_8   3 ekCieCgaCqsaCp.................vlrrtkkhlldargeaae 34 
                  +CieCgaC   Cp                 ++r++ +h  +a+ + ++
  CTQ28408.1 414 ADCIECGACAWVCPsniplvqyfrqekaeiaAIRQEEQHAAEAKARFEA 462
                 68***********877776665555555544333344444444444444 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   4.1   3.8e-05     0.034       9      22 .]     376     389 ..     372     389 .. 0.89
   2 !   16.9   3.1   5.5e-06    0.0049       6      21 ..     412     427 ..     408     428 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.8e-05
      Fer4_2   9 rCigCgaCvsaCPa 22 
                  Ci+C+aC +aCPa
  CTQ28408.1 376 GCIRCSACADACPA 389
                 5************8 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 5.5e-06
      Fer4_2   6 dtdrCigCgaCvsaCP 21 
                 + + Ci+CgaC ++CP
  CTQ28408.1 412 NLADCIECGACAWVCP 427
                 5566************ PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.5   2.9e-05     0.026       2      20 ..     377     395 ..     376     414 .. 0.83
   2 !   16.3   1.9   1.5e-05     0.014       2      41 ..     416     459 ..     415     486 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.9e-05
     Fer4_16   2 CgtCgkCaevCPtnaikek 20 
                 C++C +Ca++CP++ + ++
  CTQ28408.1 377 CIRCSACADACPADLLPQQ 395
                 *************998876 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.5e-05
     Fer4_16   2 CgtCgkCaevCPtna.....ikekkekeiearecisyntaekkdl 41 
                 C++Cg+Ca vCP+n      ++++ ++ei+a ++++++ ae k  
  CTQ28408.1 416 CIECGACAWVCPSNIplvqyFRQE-KAEIAAIRQEEQHAAEAKAR 459
                 *************98532222222.33333333333344443332 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   3.5    0.0018       1.6      42      60 ..     373     391 ..     355     392 .. 0.78
   2 !   21.8  10.2   2.2e-07    0.0002       2      60 ..     377     430 ..     376     431 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0018
     Fer4_17  42 kaslCieCgeCerkCPqgl 60 
                 + + Ci C  C+ +CP++l
  CTQ28408.1 373 EEKGCIRCSACADACPADL 391
                 5567999999999999886 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 2.2e-07
     Fer4_17   2 CiqCgyClpeCpsyeaydnepkkllraaklglleeaekeekaslCieCgeCerkCPqgl 60 
                 Ci+C++C+++Cp     ++     l+ ++ g+ ++  + ++  +CieCg C+ +CP+++
  CTQ28408.1 377 CIRCSACADACPADLLPQQ-----LYWFSKGQQHDKATAHNLADCIECGACAWVCPSNI 430
                 ************9776443.....3333335555556779*****************98 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   1.5    0.0001      0.09       3      16 ..     376     389 ..     372     397 .. 0.88
   2 !   14.5   0.9   4.1e-05     0.037       4      17 .]     416     429 ..     410     435 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.0001
      Fer4_4   3 rCigCgsCvaaCPq 16 
                  Ci+C +C +aCP 
  CTQ28408.1 376 GCIRCSACADACPA 389
                 4************5 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 4.1e-05
      Fer4_4   4 CigCgsCvaaCPqg 17 
                 Ci+Cg+C  +CP++
  CTQ28408.1 416 CIECGACAWVCPSN 429
                 ************75 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   6.7   6.3e-07   0.00057       5      52 ..     374     427 ..     371     433 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.3e-07
     Fer4_21   5 edkCigCgkCliaCedtshqai........eidaktvl.kvvedeCvGCnlCssvCP 52 
                 e+ Ci C  C+ aC+      +        +++++ ++ ++   +C+ C  C+ vCP
  CTQ28408.1 374 EKGCIRCSACADACPAD---LLpqqlywfsKGQQHDKAtAHNLADCIECGACAWVCP 427
                 678***********953...3333336765333333331445689************ PP

>> NQRA  Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   5.2e-07   0.00046      22     218 ..      36     245 ..      26     257 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 5.2e-07
        NQRA  22 dakavkkvallgedyvglkpklkvkegdkVkkGqvlfedKknpgvlftspasGevvein...rGekRvlqsvvievdgd.eeeefekfskkelaslsre 116
                 +++ ++++ +  ++++g + +l vk+gd+V +Gq+l        + + +p sG++++i      +  +l ++ + +d d e   +e+ + ++ ++ +re
  CTQ28408.1  36 QVSLPQRFVIPLKQHIGAEGELCVKVGDRVLRGQPLTRGWG-RMLPVHAPTSGTIAAIAphtTAHPSALAEMSVIIDADgEDRWIERDGWSDYQTRTRE 133
                 55667778888899999999****************98765.467889**********7222344566766555555443566677888899******* PP

        NQRA 117 evkeqLlksGlwtalrtrPf...skvaapdsepkaifvsamdtnPlaadpeviikeeeeafqaglkvlsk.Ltegkvhvckkkeaalpla.......el 204
                 ++ e++ + G+   l    f   sk+    ++ k ++++a++ +P+    + ++++ +++  +g+++l++ L +++v +  ++++    +       ++
  CTQ28408.1 134 ALIERIHQFGVA-GLGGAGFptgSKLRGGGDKIKTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHiLQPEEVLIGIEDNKPQAISmlravlcDA 231
                 **********85.56666672234555567899999********************************9835667788877766544333223334455 PP

        NQRA 205 ekvelhefsGphPa 218
                 ++++l+ +  ++P+
  CTQ28408.1 232 HGISLRVIPTKYPS 245
                 55555555555555 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   4.4   0.00067       0.6       9      23 ..     377     391 ..     377     392 .. 0.92
   2 !   14.6   3.2   2.9e-05     0.026       9      23 ..     416     430 ..     410     431 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00067
      Fer4_6   9 CigCgdCvrvCPega 23 
                 Ci C +C+++CP++ 
  CTQ28408.1 377 CIRCSACADACPADL 391
                 ************975 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.9e-05
      Fer4_6   9 CigCgdCvrvCPega 23 
                 Ci Cg+C+ vCP ++
  CTQ28408.1 416 CIECGACAWVCPSNI 430
                 ************875 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   2.6      0.02        18      56      73 ..     372     389 ..     362     393 .. 0.65
   2 !   16.7   0.6     7e-06    0.0062      48      77 ..     403     432 ..     395     444 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.02
     Fer4_18  56 kgagdcidcescvkvcPt 73 
                 +++  ci c++c + cP 
  CTQ28408.1 372 QEEKGCIRCSACADACPA 389
                 455556666666666665 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 7e-06
     Fer4_18  48 kekeerkekgagdcidcescvkvcPtgidi 77 
                 +++++ ++++ +dci+c++c  vcP +i +
  CTQ28408.1 403 QQHDKATAHNLADCIECGACAWVCPSNIPL 432
                 56778888999**************99965 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.3     0.014        12      77      94 ..     372     389 ..     360     391 .. 0.73
   2 !   13.2   0.6   0.00014      0.13       1      64 [.     415     475 ..     415     496 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.014
     Fer4_22  77 fgesgCvGCgRCieacpv 94 
                  +e+gC+ C  C +acp+
  CTQ28408.1 372 QEEKGCIRCSACADACPA 389
                 567788888888888876 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00014
     Fer4_22   1 rClsCgaCtlvCptCsCfdvedetkeeskegervrvwdsClleeftkvaggenvrkekkerlrq 64 
                 +C++CgaC+ vCp+ +      ++  e++e   +r+ ++   e  ++ +++ ++r e+++  r 
  CTQ28408.1 415 DCIECGACAWVCPSNIPLVQYFRQ--EKAEIAAIRQEEQHAAEAKARFEAR-QARLEREKAARA 475
                 5************97654433333..2333333443333333333333222.222222222222 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.5     0.033        29       3      17 ..     374     388 ..     373     390 .. 0.90
   2 !   14.5   0.9   4.5e-05      0.04       5      19 ..     415     429 ..     412     467 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.033
     Fer4_13   3 rdtCiacgaCvelaP 17 
                 ++ Ci c aC++++P
  CTQ28408.1 374 EKGCIRCSACADACP 388
                 579************ PP

  == domain 2  score: 14.5 bits;  conditional E-value: 4.5e-05
     Fer4_13   5 tCiacgaCvelaPdv 19 
                  Ci+cgaC++++P  
  CTQ28408.1 415 DCIECGACAWVCPSN 429
                 6************74 PP

>> NQRA_SLBB  NQRA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.7e-05     0.051       1      46 [.     296     343 ..     296     346 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.7e-05
   NQRA_SLBB   1 viAlaGpavkkprlvrtrlGaslsdllage.lksg.evRvISGsVLtG 46 
                 v++l+G av+ p+ v  rlG ++  ll++    ++ e  vI G +L G
  CTQ28408.1 296 VVTLTGEAVTRPGNVWARLGTPVRHLLNDAgFCPSaEPMVIMGGPLMG 343
                 8****************************9955555999999999999 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.4    0.0015       1.4       1      12 [.     377     388 ..     377     390 .. 0.94
   2 ?   14.2   3.7   7.3e-05     0.066       1      14 [.     416     429 ..     416     430 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0015
      Fer4_3   1 CtgCgaCvevCP 12 
                 C+ C+aC ++CP
  CTQ28408.1 377 CIRCSACADACP 388
                 ************ PP

  == domain 2  score: 14.2 bits;  conditional E-value: 7.3e-05
      Fer4_3   1 CtgCgaCvevCPvg 14 
                 C+ CgaC  vCP++
  CTQ28408.1 416 CIECGACAWVCPSN 429
                 ************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1454  (0.0810977); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.44
# Mc/sec: 4868.55
//
Query:       CTQ28409.1  [L=350]
Description: putative inner membrane oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.3e-107  357.6  17.3     6e-107  357.4  17.3    1.0  1  NQR2_RnfD_RnfE  NQR2, RnfD, RnfE family


Domain annotation for each model (and alignments):
>> NQR2_RnfD_RnfE  NQR2, RnfD, RnfE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.4  17.3  3.4e-111    6e-107       3     292 .]       6     348 ..       4     348 .. 0.95

  Alignments for each domain:
  == domain 1  score: 357.4 bits;  conditional E-value: 3.4e-111
  NQR2_RnfD_RnfE   3 sssphvrdkestkrimldvliallpallfgvynfglqalllilvavvvavlaEvlfaklrkkevkvt..dlsavvtglLlalilPptlplwvvvi 95 
                     +ssp+++++++t+riml vl+a +p +++++++fg++++l+i++a ++a ++E+++ klrk++v+ t  d+sa++tglLla+++Pp +p+w+vv+
      CTQ28409.1   6 ASSPYTHNQRQTSRIMLLVLLAAVPGIVVQTWFFGWGTVLQIVLAALTAWATEAAILKLRKQPVAATlkDNSALLTGLLLAVSIPPLAPWWMVVL 100
                     79**************************************************************999**************************** PP

  NQR2_RnfD_RnfE  96 gsvfaivvvKelfGGlGqNifNPAlvgrafllisfpaqmt.wva....................................DavsgatpLaalk.. 151
                     g++fa+v++K+l+GGlG+N+fNPA++g+++llisfp+qmt w++                                    D+vs+atpL+++k  
      CTQ28409.1 101 GTAFAVVIAKQLYGGLGHNPFNPAMIGYVVLLISFPVQMTsWLPsyeiaahipafsdalqmiftghtaaggdmaslrlgiDGVSQATPLDTFKts 195
                     *****************************************9988999*********************************************88 PP

  NQR2_RnfD_RnfE 152 ......saslldl.flg.niagsigetsalalllgglyLlvrkiiswripvsvlatvavlsllfn....llaapplfhllsGglllgafFmatdp 234
                            +++l+l ++g  +ag  ++++++a l+ggl+Ll++k i+w+ipvs+l+++ ++++l +    +  a+p +hllsG+++lgafF++tdp
      CTQ28409.1 196 lhaghsVQQVLQLpVYGgVLAGLGWQWMNIAWLAGGLFLLWQKAIRWHIPVSFLVSLGLCATLGWifspQSLASPQMHLLSGATMLGAFFILTDP 290
                     776654145565533334899****************************************7777666866788********************* PP

  NQR2_RnfD_RnfE 235 vtspitkkGklifglliGlltvliRvfgaypeGvafaiLlmNllvplidkltrprnfg 292
                     vt+++t++G+lifg+l+Gll++liR fg+yp+Gvafa+Ll+N++vplid++trpr++g
      CTQ28409.1 291 VTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYG 348
                     *******************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2783.99
//
Query:       CTQ28410.1  [L=214]
Description: putative oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-19   68.2   0.1    1.4e-18   67.3   0.1    1.5  1  FMN_bind        FMN-binding domain
  ------ inclusion threshold ------
      0.094   13.2   0.0       0.17   12.3   0.0    1.6  1  Acetyltransf_7  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> FMN_bind  FMN-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.1   1.5e-22   1.4e-18       1      67 [.     107     195 ..     107     196 .. 0.92

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 1.5e-22
                 SSSSEEEEEEEEETTTSBEEEEEEEESSS-TTTGGG.........................CTTHHHHSSEEETCTTBHHHHHHHHHHHHHH CS
    FMN_bind   1 GyggtikvlvtvkdgdgtItgievlehsETpglgsk.........................avkkdggdqevDaiSGATissravkdavnaa 67 
                 Gy+g i++lv+  d  gt+ g +v+eh+ETpglg+k                         avkkdgg  ++D+++GATi++rav++av++a
  CTQ28410.1 107 GYSGAIQLLVAA-DFSGTVLGTRVTEHHETPGLGDKielrlsdwithfagkvihgqgdshwAVKKDGG--DFDQFTGATITPRAVVNAVKRA 195
                 9***********.999*******************999***999999988888777666555999998..9*******************98 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05      0.17       2      50 ..      83     134 ..      82     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
                     TEEEEEEEETTEEEEEEEEEEES.....TCTEE..EEE-GGGTTSSHHHHHHHHTT CS
  Acetyltransf_7   2 kgevfVaeddgkivGfialslld.....aeitr..laVdpeyrgkGiGraLleaae 50 
                     +++v++a+++++++G +  +               l V+ ++ g  +G++  e+ e
      CTQ28410.1  83 QHKVWIAKNNDRPIGAVMEA--TapdgySG--AiqLLVAADFSGTVLGTRVTEHHE 134
                     579************65433..23574333..356***************999722 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1752.88
//
Query:       CTQ28411.1  [L=232]
Description: putative inner membrane NADH-quinone reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-62  208.1  11.0    1.1e-61  207.9  11.0    1.0  1  Rnf-Nqr   Rnf-Nqr subunit, membrane protein


Domain annotation for each model (and alignments):
>> Rnf-Nqr  Rnf-Nqr subunit, membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.9  11.0     6e-66   1.1e-61       3     173 ..       6     199 ..       4     200 .. 0.99

  Alignments for each domain:
  == domain 1  score: 207.9 bits;  conditional E-value: 6e-66
                 HHHHHHHHHTS-TTTTT--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHT------THHHHHHHHHH CS
     Rnf-Nqr   3 killsgilkeNpvlvqflGiCpflavskklknalgmglavtfvlvlsnlvisllrklipkklriivfilviAalvtlvelvlkaflpslykaLgiflpL 101
                 +++++g++k+N +lvq+lG+Cp+lav+++++nalg+gla+t+vl+l+nl+is lr++ p+++ri++++++iA++v +v+++++a++  ly++Lgif+pL
  CTQ28411.1   6 DVIVQGLWKNNSALVQLLGMCPLLAVTSTATNALGLGLATTLVLTLTNLTISSLRRWTPAEIRIPIYVMIIASVVSVVQMLINAYAFGLYQSLGIFIPL 104
                 6899*********************************************************************************************** PP

                 HHS-HHHHHHHHT--------THHHHHHHHHHHHHHHHHHHHHHHHHHTS-SSS........................-----SHHHHHHHHHHH CS
     Rnf-Nqr 102 ivvNCiilgraeafasknsvleslldglgsglGftlalvllaairellgkGtlig.......................lilagllagaFlglggl 173
                 iv+NCi+ graeafa k++++ s+ldg+  g+G t+a+++l+++re+lg+Gtl++                       ++la+l++gaF+glg++
  CTQ28411.1 105 IVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREILGNGTLFDgadsllgswakvlrievfhtdtpFLLAMLPPGAFIGLGMM 199
                 ********************************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1763.44
//
Query:       CTQ28412.1  [L=211]
Description: endonuclease III DNA glycosylase/apyrimidinic (AP) lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-19   68.3   0.0    9.9e-19   67.8   0.0    1.3  1  HhH-GPD        HhH-GPD superfamily base excision DNA repair p
    1.5e-07   30.9   0.0    3.1e-07   29.9   0.0    1.6  1  HHH            Helix-hairpin-helix motif
    0.00029   21.1   3.8    0.00046   20.4   3.8    1.3  1  EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   1.7e-22   9.9e-19       1     107 [.      34     168 ..      34     169 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 1.7e-22
                 HHHHHHTTS-HHHHHHHHHHHHHHHSHCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF
     HhH-GPD   1 vsailsqqtsderanriierlferfgfptpedladadeekLrelirelGfyrrKakyikelArilv................................. 66 
                 ++++ls+q +d+++n+++++l+      tp +++++  + ++++i+++G++++Ka+++++++ril+                                 
  CTQ28412.1  34 IAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLALGVDGVKSYIKTIGLFNSKAENVIKTCRILLeqhngevpedraalealpgvgrktanvvlntaf 130
                 6899********************5..5*********************************************************************55 PP

                 S-SSS--TTSHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 gkpdvlivvDvhvrrilkrlrsikekktkkkvekkleelle 107
                 g   ++i+vD+h+ r+++r +++   k+ ++ve+kl ++++
  CTQ28412.1 131 G--WPTIAVDTHIFRVCNRTQFAPG-KNVEQVEEKLLKVVP 168
                 4..899*****************99.699*****9988875 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   5.1e-11   3.1e-07       2      29 ..     100     127 ..      99     128 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 5.1e-11
                 HHHHHTSSHHHHHTSTT-SHHHHHHHHH CS
         HHH   2 leglipasreeLlalPGVGpktAeaIls 29 
                 ++g++p +r+ L+alPGVG+ktA+++l+
  CTQ28412.1 100 HNGEVPEDRAALEALPGVGRKTANVVLN 127
                 799***********************95 PP

>> EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   3.8   7.7e-08   0.00046       1      17 []     187     203 ..     187     203 .. 0.99

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 7.7e-08
  EndIII_4Fe-2S   1 CTARkPkCeaCPLaDlC 17 
                    C ARkP+C+ C + DlC
     CTQ28412.1 187 CIARKPRCGSCLIEDLC 203
                    ***************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1669.20
//
Query:       CTQ28413.1  [L=85]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 649.51
//
Query:       CTQ28414.1  [L=501]
Description: putative oligopeptide transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-89  301.1  20.2    1.5e-89  300.7  20.2    1.1  1  PTR2          POT family
    7.8e-18   64.5  54.5    7.8e-17   61.2  53.1    2.6  2  MFS_1         Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.31   11.0   1.4         31    4.6   0.0    2.5  2  TMEM213       TMEM213 family


Domain annotation for each model (and alignments):
>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.7  20.2   2.4e-93   1.5e-89       2     388 ..      89     446 ..      88     459 .. 0.93

  Alignments for each domain:
  == domain 1  score: 300.7 bits;  conditional E-value: 2.4e-93
                 HHHHHHHHHHHHHHHHCCCCTTTTSS--S--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        PTR2   2 ktIllgsiiyaiGhvvlalsaipslksaesagvrvallfigLalIalGtGgiKpnvSafgadqfeekdprersrfFsiFyfsiNvGSLlsliitpylqe 100
                 ++I+lg+i++aiG++++a+s +++           a++++g+a+Ia+G+G++K+n+S++++ +++++dpr +++ F+++y+siN+GS++s+++tp+l+ 
  CTQ28414.1  89 RVIMLGAIVLAIGYALVAWSGHDA-----------AIVYMGMATIAVGNGLFKANPSSLLSTCYDKNDPRLDGA-FTMYYMSINIGSFFSMLATPWLAA 175
                 89********************99...........59*************************************.************************ PP

                 TT-HHHHHHHHHHHHHHHHHHHHCTTTS-EE------SHHHHCCCHSHHHHHCCCHHHHHHHHHHHHHSHHHHHH--.-HHCCHCHHHHHHHHH-...H CS
        PTR2 101 nvgyplgFgipavlmiiallvFllGsrlykkkppkgnvltkvfkvllvaaknkvkkirssagkkklhwldkakeldk.alsileivvegivfnim...t 195
                 + g++++F++++v+m+i+++ F+++++++k++++k+++    + +l +a++  v     + +  +++wl +++ +++ +   l++v+ giv++++    
  CTQ28414.1 176 RFGWSVAFALSVVGMVITIINFAFCQKWVKQYGSKPDFAPVHMGKL-LATIAGV-----VVLVAIATWLLHNQGIARmV---LGVVALGIVVIFAketI 265
                 **************************************99999999.5555444.....6777889*********9955...55555555555553326 PP

                 HTHHCHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHH.HTST-BE.SSCB--GGGGHHHHHHHHHHHHHHHHHCTHHHHHHTTSSCCCCHHHHHHHHH CS
        PTR2 196 kkkveevkrllrvvplflpliifwalyaQmgttlvlqa.rtmnrki.gsfeippaqlqvlnailillliPifdklvypllrkltlgltslkkiavGlfl 292
                   k + +++++ ++ l++++i+f++ly+Qm+t+l+++a r+++++i g +  +p+q+q+ln+++i++ +Pi+++++++++++    l ++ k+a+G++l
  CTQ28414.1 266 GLKGAPRRKMIVAFLLMVEAIVFFVLYSQMPTSLNFFAiRNVEHSIlG-LAFEPEQYQALNPFWIMIGSPILAAIYNKMGDR----LPMPHKFAIGMVL 359
                 77999*****************************************99.********************************7....88*********** PP

                 HHHHHHHHHHHHHHHCCHHHT----------TCCCHHHHHHHHHHHHHCCCHHHHHHCTSS-TTTCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCT CS
        PTR2 293 aslafaiaaivelkraktlpelpeaeevqisvlwlipqylligiselfasiggleffykeapksmkslitglflltnalgnflssvlatlvakate 388
                 +s af+++ + + ++++++          +sv wli++y+l++i+el++s  gl++++++ p++++++i+g+++lt+a + ++++ +a+l+a +++
  CTQ28414.1 360 CSGAFLVLPLGAKFASDAG---------IVSVNWLILSYALQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAAIIAGKIANLMAVPEN 446
                 *******************.........9**************************************************************98775 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2  53.1   1.3e-20   7.8e-17      10     352 ..      35     434 ..      26     435 .. 0.78
   2 !   15.1  20.7   1.4e-06    0.0082      39     177 ..     327     482 ..     275     498 .. 0.62

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 1.3e-20
       MFS_1  10 larsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpag 106
                 ++++ l  ++  +l ++lg+s++   +l++ ++++   ++ ++G+l+d+ +G +rv++lg++++a+g +l +++ +   +++ + +  ++g g++ ++ 
  CTQ28414.1  35 FGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKvLGTKRVIMLGAIVLAIGYALVAWSGHDAaIVYMGMATIAVGNGLFKANP 133
                 5666777788889************************************88****************33333675555599999999************ PP

       MFS_1 107 aaliadwfpk..eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll....peepperkrkspkeee........... 188
                  +l++  + k  ++   a+ ++++++++G+ + +l+ ++la+ +gW+++f +  + +++ ++   + +    +  + +++ ++p+  +           
  CTQ28414.1 134 SSLLSTCYDKndPRLDGAFTMYYMSINIGSFFSMLATPWLAARFGWSVAFALSVVGMVITIIN--FAFcqkwVKQYGSKPDFAPVHMGkllatiagvvv 230
                 *********9767***********************************************996..3333466333334444444444366677777798 PP

       MFS_1 189 ..........................kgtgpaplvp.......awkallkdpvlw..illialllfffgfsglltllplylqevlgls........gll 244
                                           +                ++k   +++ +   +l++ +++ff+ +s++ t l +++      s          +
  CTQ28414.1 231 lvaiatwllhnqgiarmvlgvvalgiV--------VifaketiGLKGAPRRKMIVafLLMVEAIVFFVLYSQMPTSLNFFAIRNVEHSilglafepEQY 321
                 888888888766665555444333221........2333333334444444422122344444444555555888888875444444455665877347 PP

       MFS_1 245 laglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..........ssavllllvlvliGfglgfvfpsllalasdlappee 333
                 +a+   ++  ++g   +++++++ +++g r ++   ++++++++ g +l+ +            s  +l+l+++l ++g  +++++ la++++l+p++ 
  CTQ28414.1 322 QAL--NPFWIMIG---SPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLgakfasdagiVSVNWLILSYALQSIGELMISGLGLAMVAQLVPQRL 415
                 777..88888888...99***************9999998888888888888889******9999999999**************************** PP

       MFS_1 334 agtasglfntagslggalg 352
                 +g+++g   ++ + +++++
  CTQ28414.1 416 MGFIMGSWFLTTAGAAIIA 434
                 ******9995555555554 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.4e-06
       MFS_1  39 tlyalgaavaslplGrlsdrfG.rrrvlllglllfalg.lllll...fa.....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraiglls 127
                    ++g+ +++ ++  ++dr+  + + + +g++l + + l+l+l   fa      s+ +l+++ +lq++g+ ++  +g+a++a+++p++  g+ +g + 
  CTQ28414.1 327 FWIMIGSPILAAIYNKMGDRLPmPHK-FAIGMVLCSGAfLVLPLgakFAsdagiVSVNWLILSYALQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWF 424
                 33445555555555555666533333.455555555553555556666455565445589999999999999999999999999999988888888888 PP

       MFS_1 128 agfslGailgpllggllasslg.............Wravfyilaivsllafvlfllllpeepp 177
                 ++++ +ai++  ++ l+a                 +  vf+ ++iv+++ + l  +ll++++ 
  CTQ28414.1 425 LTTAGAAIIAGKIANLMA---VpenvtdplvslevYGHVFLQIGIVTAVIAAL--MLLTAPKL 482
                 888888877777777777...12346799999999999999999999999776..66655554 PP

>> TMEM213  TMEM213 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.6     0.006        36      43      56 ..     171     184 ..     166     196 .. 0.80
   2 ?    4.6   0.0    0.0051        31      42      79 .]     457     495 ..     452     495 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.006
     TMEM213  43 GWiaaavGWslwfl 56 
                  W+aa  GWs+ f 
  CTQ28414.1 171 PWLAARFGWSVAFA 184
                 6*********9984 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0051
     TMEM213  42 yGWiaaavGWslw.fltlillcvgklvkltpdepkdlqa 79 
                 yG +   +G       +l+ll   kl ++t d++ d++a
  CTQ28414.1 457 YGHVFLQIGIVTAvIAALMLLTAPKLNRMTQDDSADIKA 495
                 5566666665444044799***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       990  (0.0552178); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3494.34
//
Query:       CTQ28415.1  [L=201]
Description: glutathionine S-transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-13   49.5   0.1      6e-13   48.8   0.1    1.3  1  GST_C     Glutathione S-transferase, C-terminal domain
    1.1e-10   41.6   0.0    3.3e-10   40.2   0.0    1.8  1  GST_N     Glutathione S-transferase, N-terminal domain
      7e-09   35.8   0.1    1.3e-08   34.9   0.1    1.5  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    3.3e-08   33.7   0.0    7.1e-08   32.6   0.0    1.6  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    6.3e-08   32.9   0.0    1.2e-07   32.0   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    7.5e-08   32.3   0.8    1.5e-07   31.3   0.8    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.024   14.4   0.1       0.18   11.6   0.1    2.2  1  GST_C_6   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.1   2.3e-16     6e-13       4      93 .]     103     189 ..      96     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 2.3e-16
                 HHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C   4 lisqilllfyvkaeekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerimarp 93 
                 +++++ +++++++ +++e ++  a+  + + l+++++ l+++ +l G ++t+AD +l+++l+w++ ++l+   +++ ++  w++ ++arp
  CTQ28415.1 103 TELHKSFTPLFRP-DTPEDYKPVARGLLEKKLQYVDAALADKQWLTGHRFTIADGYLFTVLRWAYAIKLDM--AAYGHIGNWMTQVAARP 189
                 5677888999999.59999****************************************************..6***************9 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.3e-13   3.3e-10       4      75 ..       2      74 ..       1      75 [. 0.91

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.3e-13
                EEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGC.HHHHHHCTTS-SSEEEET.TEEEESHHHHHHHHH CS
       GST_N  4 tlysirgsprahrirlllaakgveyevvpldfeageeks.pellklnplgkvPaLedn.gkkltESraIleYia 75
                +l+  +g + + + +++l ++g+++    +d+ +++ +  +++l +np+g+vPaL  + +  ltE  aI++Yia
  CTQ28415.1  2 KLFYKPG-ACSLASHIALRESGLDFTLQSVDLAQKRLENgEDYLLINPKGQVPALLLDdDILLTEGVAIMQYIA 74
                7777888.788999******************99999999**************9877699************8 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.1   5.1e-12   1.3e-08      19      97 ..     119     196 ..      96     198 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 5.1e-12
                 HHHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHHTCC.CC-HHHHHHHHHHHTSHHHHHHHC CS
     GST_C_3  19 ekkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleeaeal.kkfpklkalyervearpkikaYle 97 
                 e  k + +  l+k l+y++ +l+   +++l g+++T+AD  lf+vl     ++ + +++ ++ +++ +v+arp+++a l+
  CTQ28415.1 119 EDYKPVARGLLEKKLQYVDAALA--DKQWLTGHRFTIADGYLFTVLRWAYAIKLDmAAYGHIGNWMTQVAARPAVAAALA 196
                 7788899999*************..899*******************9999955569*******************9886 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   2.8e-11   7.1e-08       8      69 ..      14      75 ..       9      76 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 2.8e-11
                HHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHHH CS
     GST_N_2  8 vlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlrylet 69
                 +ial++ gl+++++ v+l +k  e++e+++ +np+g+VP+L ++d   ++e  +I++y+++
  CTQ28415.1 14 SHIALRESGLDFTLQSVDLAQKRLENGEDYLLINPKGQVPALLLDDDILLTEGVAIMQYIAD 75
                58******************************************9989999********987 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   4.7e-11   1.2e-07      14      74 ..      15      80 ..      13      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 4.7e-11
                HHHHHHHT--EEEE---TTTT....HHHHHHH-TT--SSEEE.TTS-EEESHHHHHHHHHHHH-GG CS
     GST_N_3 14 rlaLnekglpvevvevtpgeh....deellaknplgkvPvLe.ddgealtdSlaIidyLeelypgp 74
                ++aL+e gl++++ +v+  ++     e +l +np+g+vP+L  dd+  lt+  aI++y+ ++ p++
  CTQ28415.1 15 HIALRESGLDFTLQSVDLAQKrlenGEDYLLINPKGQVPALLlDDDILLTEGVAIMQYIADQVPDR 80
                58***********999966643445899*************8467889************998876 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.8     6e-11   1.5e-07       8      67 ..     126     182 ..      88     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 6e-11
                 HHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHH CS
     GST_C_2   8 leqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdireaypnlraWl 67 
                 +  l+++l  ++a Lad+++l G ++t+aD  l+++l ++ a+      ++ay ++  W+
  CTQ28415.1 126 RGLLEKKLQYVDAALADKQWLTGHRFTIADGYLFTVLRWAYAIKL---DMAAYGHIGNWM 182
                 556899**********************************99873...344554444444 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     7e-05      0.18       2      37 ..     130     165 ..     129     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7e-05
     GST_C_6   2 kkdleaLselLgdkkyFfGdkPtslDAlvFGhlaqi 37 
                 +k l+ +   L+dk+++ G++ t +D ++F +l   
  CTQ28415.1 130 EKKLQYVDAALADKQWLTGHRFTIADGYLFTVLRWA 165
                 578899999**********99*********988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1537.21
//
Query:       CTQ28416.1  [L=286]
Description: pyridoxal kinase 2/pyridoxine kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-15   57.2   0.0      2e-15   56.9   0.0    1.1  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
    2.5e-11   43.4   0.1    7.4e-11   41.9   0.1    1.8  1  PfkB          pfkB family carbohydrate kinase
    6.1e-05   22.6   0.1    0.00033   20.2   0.1    2.0  1  Carb_kinase   Carbohydrate kinase
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.039   14.0   0.0    1.8  2  SsgA          Streptomyces sporulation and cell division prot


Domain annotation for each model (and alignments):
>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   4.4e-19     2e-15      60     237 ..      74     259 ..      51     267 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 4.4e-19
                   --SEEEE-S--SHHHHHHH...HHHHHH.TTS.SEEEE---SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHH CS
  Phos_pyr_kin  60 kvdavKiGmlasaeiievv...aeklkk.ykv.pvVlDPVmvaksgselleeeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkl 151
                   ++dav  G l+sae  e +   ++++k    + ++ +DPVm   +   ++++ + e   +  lp +++i PNl E+e L+g+++++++++ +aa++l
    CTQ28416.1  74 TCDAVLSGYLGSAEQGEHIlgiVRQVKAaNPAaKYFCDPVMGHPEKGCIVAPGVAEFHVRYALPASDIIAPNLVELEILCGHPVASVSEAVAAAREL 170
                   5888889999998877665222444433233459*************************************************************** PP

                   HHTT-SEEEEEEGGS-S.SSEEEEEEEETSSEEEEEEEE----..S--BTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHCG-B CS
  Phos_pyr_kin 152 lklgakaVlikGghleg.eeavvtdvlydgeeveeleaeriet..knthGtGCtlssaiaaelakgesleeAvkkAkeyvteaikeale 237
                   +++g + Vl+k     g + ++++ +l++ ee  +++ + ++   ++  G G++ s  +  +l +g sl++A+++ ++ v+e + ++ +
    CTQ28416.1 171 IAQGPEVVLVKHLARAGlSMDRFEMLLVTAEEAWHISRPLVDFglRQPVGVGDVTSGLLLVKLLQGASLRDALEHVTAAVYEIMLATKN 259
                   ***********88665546666666777***********9985227889*************************999988887765555 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1   1.6e-14   7.4e-11     178     284 ..     133     248 ..      94     252 .. 0.80

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 1.6e-14
                 HHHHCTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE........TTEEEEEEE.SSSS..-SBGTTHHHHHHHHHH CS
        PfkB 178 lellaladllkpneeElealtgekledieealaalhklkakgaktvvvtlGkeGalvve........kdgelkvpavpkvk..vvDttGAGDsfvggfl 266
                 + +l+ +d++ pn  Ele+l+g++ +++ ea+aa+ +l+a+g+++v+v++ ++  l  +         ++ +++++ p v+    +++G GD   g +l
  CTQ28416.1 133 RYALPASDIIAPNLVELEILCGHPVASVSEAVAAARELIAQGPEVVLVKHLARAGLSMDrfemllvtAEEAWHISR-PLVDfgLRQPVGVGDVTSGLLL 230
                 45679*******************************************8755544444445555555999999999.767622569************* PP

                 HHHHTTHHHHHHHHHHHH CS
        PfkB 267 aallegksleealrfana 284
                 + ll+g+sl++al+  +a
  CTQ28416.1 231 VKLLQGASLRDALEHVTA 248
                 *************98765 PP

>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   7.3e-08   0.00033     120     229 ..     140     264 ..     131     275 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 7.3e-08
                  EEEE--HHHHHHHCTTTCHHCCSHHHHHHHHHHHHTTEEEEESTTSEEEEC.........TTEEEEE--...--GGG-STTHHHHHHHHHHHHHHCTS CS
  Carb_kinase 120 viLTPhkkEfkrLlkaivkkeddrlelarelaqklnavvllkgekdvivsp.........egevlinst...gssalakGGsGDvLaGligalLaqne 205
                   i+ P+ +E + L++ +v++ ++ + +arel+++ + vvl+k  +    s          ++e +++s    + +++   G GDv++Gl++  L q +
   CTQ28416.1 140 DIIAPNLVELEILCGHPVASVSEAVAAARELIAQGPEVVLVKHLARAGLSMdrfemllvtAEEAWHISRplvDFGLRQPVGVGDVTSGLLLVKLLQGA 237
                  599***************************************86654333321111111155666665411134556778***********9999988 PP

                  ...SHHHHHHHHHHHHHHHHHHHCCCT CS
  Carb_kinase 206 ...asyeaaiaaawlhgaasdeaaekk 229
                     +++e + aa+++   a ++++e +
   CTQ28416.1 238 slrDALEHVTAAVYEIMLATKNMQEYE 264
                  777888888888888777777776654 PP

>> SsgA  Streptomyces sporulation and cell division protein, SsgA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.5   6.7e+03      30      39 ..     165     174 ..     146     178 .. 0.76
   2 ?   14.0   0.0   8.6e-06     0.039      26      50 ..     201     225 ..     192     227 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.5
                 EEEHHHHHHH CS
        SsgA  30 vfaRelLaeG 39 
                 + aRel+a+G
  CTQ28416.1 165 AAARELIAQG 174
                 4678888888 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 8.6e-06
                 -EEEEEEHHHHHHHTTS-EEETTEE CS
        SsgA  26 evewvfaRelLaeGlrapageGdVr 50 
                 e  w+++R l+  Glr+p+g GdV+
  CTQ28416.1 201 EEAWHISRPLVDFGLRQPVGVGDVT 225
                 668********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2183.71
//
Query:       CTQ28417.1  [L=424]
Description: tyrosyl-tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-92  309.8   0.0    2.2e-92  309.5   0.0    1.1  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)
     0.0001   22.0   0.0    0.00024   20.7   0.0    1.7  1  S4            S4 domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.5   0.0   2.5e-96   2.2e-92       3     292 ..      31     328 ..      29     329 .. 0.98

  Alignments for each domain:
  == domain 1  score: 309.5 bits;  conditional E-value: 2.5e-96
                   HS--EEEEEEETSSS.-BGGGHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT.-SSHHHHHHHHHHHHHH..HHHHHHHTCHTTT....EEEEETH CS
  tRNA-synt_1b   3 erplrvysGidPTgk.lHlGylvplkklvelqkaghevffliaDlhAiigdps.kaeerklrkreevlena..ikaqlakgldpek....aevvlqs 91 
                   ++p+++y+G+dPT++ lHlG+lvpl +l ++q+agh++++l+++++++igdps ka+erkl+++++v+e++  i++q+a +ld++     a   +++
    CTQ28417.1  31 QGPIALYCGFDPTADsLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSfKAAERKLNTEDTVQEWVdkIRKQVAPFLDFDCgdnsAIAANNY 127
                   6799**********************************************************************************9998889**** PP

                   HHHTTHHHHHHHHHHHTTCBHHHHHHHHHCCHHCSS.SC--BHHHHHHHHHHHHHHHHTCHS....EEEEEGGGHHHHHHHHHHHHHHHHHSTTSS- CS
  tRNA-synt_1b  92 ewlehlelaellrdlgklgslnrmlqfksvkkrlee.gegislgeftYplLqaaDilllkad....lvpgGsDQkqnielgrdlarrfnkkevfkkp 183
                   +w  +++++++lrd+gk++s+n+m+++++vk+rl++ ++gis++ef+Y lLq++D+++l++     l++gGsDQ++ni++g+dl rr++++    ++
    CTQ28417.1 128 DWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRdDQGISFTEFSYNLLQGYDFACLNKLhgvaLQIGGSDQWGNITSGIDLTRRLHQN----QV 220
                   ************************************99***********************99999************************9....** PP

                   EEEEET-BBSTTSSSBTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTCSHHHHHHHHHTHHHCHHHHHHHHCCSEE.ESSHHHHHHHHHCCCCHHHH CS
  tRNA-synt_1b 184 egltvplltgldGekKmSKSagnsaIfLddekesvkkkiqkavtdsdeevekllklktelsnelierleavsgkkp.kreaeellaeevtklvhggd 279
                   +gltvpl+t++dG+ K++K++g+ a++Ld++k+s++k++q+++++ d++v+++lk +t++++ +i++le++ +++    +a+ +lae+vt+lvhg++
    CTQ28417.1 221 FGLTVPLITKADGT-KFGKTEGG-AVWLDPKKTSPYKFYQFWINTADADVYRFLKFFTFMDIAEINALEEEDKNSGkAPRAQYVLAEQVTRLVHGEE 315
                   **************.********.***********************************************888877779***************** PP

                   HHHHHHHHHHHHH CS
  tRNA-synt_1b 280 lkkalaealnell 292
                     +a+++ +++l+
    CTQ28417.1 316 GLEAAKRITESLF 328
                   ********99998 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.7e-08   0.00024       4      43 ..     360     399 ..     359     404 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.7e-08
                 HHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE- CS
          S4   4 dkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVk 43 
                  + l+ + l +sr +Ar+ +    V++NG++  dp y   
  CTQ28417.1 360 LQALVDSELQPSRGQARKTVASNAVTINGEKQADPEYVFA 399
                 45677799***************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3350.51
//
Query:       CTQ28418.1  [L=220]
Description: pyridoxine 5'-phosphate oxidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-24   85.7   0.0    2.6e-24   85.2   0.0    1.2  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
    1.2e-18   66.9   1.6    1.2e-18   66.9   1.6    2.1  2  PNP_phzG_C      Pyridoxine 5'-phosphate oxidase C-terminal di
      0.004   16.8   0.0     0.0077   15.8   0.0    1.4  1  Pyrid_ox_like   Pyridoxamine 5'-phosphate oxidase like
  ------ inclusion threshold ------
      0.057   13.6   0.0      0.084   13.1   0.0    1.2  1  ThuA            Trehalose utilisation


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   5.9e-28   2.6e-24       2      85 ..      42     124 ..      41     127 .. 0.94

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 5.9e-28
                     HHHHHHHHHHSSEEEEEEEETTSEEEEEEEEEEEETTTTEEEEEEETTSHHHHHHHHH-EEEEEEEETTGSEEEEEEEEEEEES CS
  Putative_PNPOx   2 deelreflaeskavvlATvdedGrPnvspvllkagdgrdgivfatnadsrklrnleenprvallflddelgrgvrieGtaelvs 85 
                     ++++ + la++ a+v+ATvde G+P+ ++vllk+ d++ g+vf+tn  srk++++e+np+v+llf +  l+r+v++ G+ae +s
      CTQ28418.1  42 RQACDAKLADPTAMVVATVDERGQPYQRIVLLKHYDEK-GLVFYTNLGSRKAHQIENNPQVSLLFPWHMLERQVMVIGKAERLS 124
                     56788999*************************88888.******************************************997 PP

>> PNP_phzG_C  Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.74   3.3e+03      22      31 ..      14      23 ..      12      44 .. 0.59
   2 !   66.9   1.6   2.7e-22   1.2e-18       1      43 []     180     220 .]     180     220 .] 0.98

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.74
  PNP_phzG_C 22 HdRfrYeree 31
                H R  Y+r +
  CTQ28418.1 14 HLRREYTRGG 23
                8888888743 PP

  == domain 2  score: 66.9 bits;  conditional E-value: 2.7e-22
  PNP_phzG_C   1 WgGyrvvPeeiEFWqgrpsRlHdRfrYereeedgkWkierLsP 43 
                 WgG+rv  e++EFWqg+++RlHdRf Y+r++  g Wki+rL+P
  CTQ28418.1 180 WGGFRVSIEQMEFWQGGEHRLHDRFLYQRDS--GAWKIDRLAP 220
                 *****************************99..79*******9 PP

>> Pyrid_ox_like  Pyridoxamine 5'-phosphate oxidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.7e-06    0.0077      16      84 ..      54     122 ..      47     136 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.7e-06
  Pyrid_ox_like  16 amLttteadgklksrPMatqkveedgdlwfltkkdsdkvkeirkdsqvnlafsdeskkkyvsvsGtaev 84 
                    am++ t ++     +     k  ++  l f+t+  s+k+++i++++qv+l+f  +  +  v+v G+ae 
     CTQ28418.1  54 AMVVATVDERGQPYQRIVLLKHYDEKGLVFYTNLGSRKAHQIENNPQVSLLFPWHMLERQVMVIGKAER 122
                    5555444433333333444455556668899*********************99999999999999985 PP

>> ThuA  Trehalose utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.9e-05     0.084     136     192 ..      36      92 ..      25     104 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.9e-05
                 EEEEEEE.-...S---SE..EEEEE...............ETE...TTEEEEEE----TTS CS
                 xxxxxxx.x...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThuA 136 rtdewYn.f...kpnprgvhvlatvdestydpngadhPiaWcreydgkGrvFytalGhtee 192
                 + ++w+      k +++ + v+atvde+     + +  i+  ++yd kG vFyt+lG  ++
  CTQ28418.1  36 LFERWLRqAcdaKLADPTAMVVATVDERG----QPYQRIVLLKHYDEKGLVFYTNLGSRKA 92 
                 556666643544555666899****8885....35667888899*************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1642.06
//
Query:       CTQ28419.1  [L=119]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-16   60.1   0.1    1.9e-16   59.8   0.1    1.2  1  MliC      Membrane-bound lysozyme-inhibitor of c-type lysozym
  ------ inclusion threshold ------
       0.92   10.1   3.5         16    6.2   3.5    2.2  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> MliC  Membrane-bound lysozyme-inhibitor of c-type lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.1   2.1e-20   1.9e-16       1      63 [.      45     106 ..      45     110 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 2.1e-20
                 EEECCCEEEEEEEECTTEEEEEEECCTEEEEEEEEETSSSEEEE.ETEEEEEETTEEEEEETTT CS
        MliC   1 YqCdsgaevtvtyiagdpsfavlrlggktltLaqavSaSGarYs.anyewWtkGdeAtLtwggg 63 
                 YqCd++ ++tv+ + + ++++++ +++++l L++ +SaSGarY+   y++W+kGd+At++++++
  CTQ28419.1  45 YQCDQK-PLTVHRN-NARQQVSFIYDNQQLNLSEGLSASGARYTdGVYVFWSKGDTATVYKRDR 106
                 9**986.*******.****************************7527*************9886 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.5    0.0018        16       1      18 []      13      29 ..      13      29 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0018
      LPAM_1  1 MKKillalgalllLsGCs 18
                MKKil+ ++  ++L+GCs
  CTQ28419.1 13 MKKILI-AVVPFMLAGCS 29
                777654.56679*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 895.95
//
Query:       CTQ28420.1  [L=374]
Description: anhydro-N-acetylmuramic acid kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-172  574.1   0.0   1.4e-172  573.9   0.0    1.0  1  AnmK      Anhydro-N-acetylmuramic acid kinase
  ------ inclusion threshold ------
        0.1   12.3   0.1       0.24   11.1   0.1    1.6  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom


Domain annotation for each model (and alignments):
>> AnmK  Anhydro-N-acetylmuramic acid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  573.9   0.0  1.5e-176  1.4e-172       2     366 .]       5     367 ..       4     367 .. 0.99

  Alignments for each domain:
  == domain 1  score: 573.9 bits;  conditional E-value: 1.5e-176
                 EEEEEE--TT-SEEEEEEEEESS.SEEEEEEEEEE--HHHHHHHHHTSS--BSHHHHHHHHHHHHHHHHHHHHHHHHHHTT--GGGEEEEEE--EEEEE CS
        AnmK   2 lyiGlmsGtslDgvdivlvdleeakvellashlfpipedlreklldllqggaatlkalgeldqelgllfadavnellqkqelkaeeiraigshGqtvrh 100
                 ++iG+msGtslDg+d+vl+++ e+ v++ as ++pip++++e++l+++qg++ tl++lg+ld++lg+lfadav +l+++++lk++++ aig+hGqtv+h
  CTQ28420.1   5 RFIGVMSGTSLDGIDVVLATITENMVAQQASLTWPIPHAIKEEILAICQGQSLTLSQLGRLDTRLGRLFADAVLALMRQESLKPTDVIAIGCHGQTVWH 103
                 79************************************************************************************************* PP

                 EGGG..TEEEEE--HHHHHHHHSS-EEE--HHHHHHTTS-S---HHHHHHHHHS-SSS-EEEEEESSEEEEEEE-TTS--EEEEEEESSHHHHHHHHHH CS
        AnmK 101 epegevpftlqlgdanliaektgitvvaDfRrrDvaaGGqGaPLvpafheallaaenearavLniGGianvsvlapnaevlgfDtGPgnaLlDawieke 199
                 ep+ge+p+tlq+gd+n+ia++tgitvv+DfRrrD+a+GGqGaPLvpafh+alla++ e+r+vLniGGianvs+lap+++v g+DtGPgn+LlDawi+++
  CTQ28420.1 104 EPQGEAPHTLQIGDNNQIAAHTGITVVGDFRRRDMALGGQGAPLVPAFHHALLAHPVERRMVLNIGGIANVSLLAPGQPVRGYDTGPGNMLLDAWIWRQ 202
                 *************************************************************************************************** PP

                 HS-SS-GGGHHHHCS---HHHHHHHHTSCCHH--SS----TTTSSHHHHHHHHTTSTT-H..HHHHHHHHHHHHHHHHHHHHHH-TT--EEEEESGGGG CS
        AnmK 200 rgkayDkdgewaasGkvnkkLLaelladpyfalpaPkstGrelFnlawlekklakapeaalpeDvqatLveltavtiadallkaqadaerllvcGGGak 298
                 +gk+yDkd++wa +Gkv   LL+++l+dp+falpaPkstGre+Fn+ wle+++a+ p     eDvqatL+eltavti++++l ++  +erllvcGGGa+
  CTQ28420.1 203 KGKPYDKDAQWASEGKVLLPLLQDMLSDPWFALPAPKSTGREYFNYGWLEQHMARYPGLR-GEDVQATLAELTAVTISEQVLLSGG-CERLLVCGGGAR 299
                 *********************************************************866.8********************9988.9*********** PP

                 -HHHHHHHHHHSTTSEEEEGGGGTS-GGGHHHHHHHHHHHHHHTT---S-HHHH--SS-----EEE-- CS
        AnmK 299 npvlmarlaallpevevestdelgldsdavealaFawLaartlnglPgnlpsvtGakkavlLGaiypa 366
                 np+lmarlaallp++ev++tde g+++d++ealaFawLa+rtl+glPgnlpsvtGa++a++LGai+pa
  CTQ28420.1 300 NPLLMARLAALLPGTEVSTTDEAGISGDDMEALAFAWLAWRTLAGLPGNLPSVTGASEASVLGAIFPA 367
                 ******************************************************************95 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   2.7e-05      0.24     151     187 ..     289     324 ..     268     333 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.7e-05
      FGGY_C 151 drlavdGGgskndllmqllAdilgvpVerpktaeata 187
                 +rl+v+GGg++n+llm  lA +l  + e+  t+ea++
  CTQ28420.1 289 ERLLVCGGGARNPLLMARLAALLPGT-EVSTTDEAGI 324
                 79**************9999999755.5566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2970.23
//
Query:       CTQ28421.1  [L=155]
Description: putative outer membrane lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-08   32.1  26.4    1.7e-07   31.0  26.4    1.6  1  Rick_17kDa_Anti  Glycine zipper 2TM domain
  ------ inclusion threshold ------
       0.04   13.7  26.3      0.088   12.6  26.3    1.6  1  Gly-zipper_YMGG  YMGG-like Gly-zipper
       0.04   13.9  26.1       0.13   12.2  25.6    2.1  2  Gly-zipper_Omp   Glycine zipper
       0.44   10.3   2.6       0.52   10.0   2.6    1.2  1  POR_N            Pyruvate flavodoxin/ferredoxin oxidoreductas
       0.78    9.3   4.1        1.2    8.7   4.1    1.3  1  DUF533           Protein of unknown function (DUF533)
        6.6    6.7  14.5         18    5.3  14.5    1.7  1  DUF2076          Uncharacterized protein conserved in bacteri
        8.4    6.6  21.4         29    4.9  21.4    2.0  1  Bacteriocin_IIc  Bacteriocin class II with double-glycine lea
        8.8    6.2  28.8        1.8    8.4  11.1    2.6  2  Gly-zipper_OmpA  Glycine-zipper domain


Domain annotation for each model (and alignments):
>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0  26.4   7.5e-11   1.7e-07       1      41 [.      62     102 ..      62     103 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 7.5e-11
  Rick_17kDa_Anti   1 vGaliGAaaGgvaGaaigggggrvlGavvGAaaGavaGnai 41 
                      +Ga++GA++Gg +G+ iggg+gr+l++++GA+aG+vaG+ +
       CTQ28421.1  62 IGAIGGAVLGGFLGNTIGGGTGRSLATAAGAVAGGVAGQGV 102
                      6****************999******************976 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  26.3   3.9e-05     0.088       4      45 ..      61     104 ..      58     105 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.9e-05
                      .XXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXX- CS
  Gly-zipper_YMGG   4 vrGAaiGAaaGAvvGaliGsgggkG....AaiGAaaGalaGgaiGa 45 
                      + GA  GA++G  +G+ iG  gg+G    +a GA+aG++aG  +++
       CTQ28421.1  61 AIGAIGGAVLGGFLGNTIG--GGTGrslaTAAGAVAGGVAGQGVQG 104
                      6899999999999999999..778877879***********88775 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  11.0    0.0016       3.6      21      41 ..      61      81 ..      43      83 .. 0.76
   2 ?   12.2  25.6     6e-05      0.13       2      44 ..      67     108 ..      62     110 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0016
  Gly-zipper_Omp 21 gtGaliGAavGaavGgliGaa 41
                    ++Ga++GA++G+++G+ iG  
      CTQ28421.1 61 AIGAIGGAVLGGFLGNTIGGG 81
                    689999999999999999865 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 6e-05
  Gly-zipper_Omp   2 GaaiGAaaGaliGgavggrgtGaliGAavGaavGgliGaamdk 44 
                     Ga++G+++G  iGg +g r   +++GA++G+++G ++  am k
      CTQ28421.1  67 GAVLGGFLGNTIGGGTG-RSLATAAGAVAGGVAGQGVQGAMNK 108
                     55555555555555555.7899999999999999888888876 PP

>> POR_N  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.6   0.00023      0.52      36      85 ..      48      97 ..      29     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00023
                EE.EEEE-SSHHHHHHHHHHHHCTT-EEEEEEECCHHHHCCCCHHHHHHT CS
       POR_N 36 gdvevvqmesEigaisaviGAaaaGaraaTaTSgqGllLmienlglaage 85
                ++++ +q  +   ai+a+ GA+++G ++ T   g G +L+  +  +a+g 
  CTQ28421.1 48 TRAVQIQSGDDSNAIGAIGGAVLGGFLGNTIGGGTGRSLATAAGAVAGGV 97
                456788999999***************************98777776665 PP

>> DUF533  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.1   0.00054       1.2       3      48 ..      65     105 ..      63     146 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00054
      DUF533   3 gggaaaggllglllGskkgrklgkkalklGglAalGglAykayqnw 48 
                  gga++gg lg  +G+++gr+l+++     + A+ Gg+A + +q  
  CTQ28421.1  65 IGGAVLGGFLGNTIGGGTGRSLATA-----AGAVAGGVAGQGVQGA 105
                 6899999********9996655544.....4455566666666532 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  14.5    0.0081        18     152     191 ..      79     117 ..      26     149 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0081
     DUF2076 152 GggFLggAlqtAAGVaGGvllangleslfsgksgeegaas 191
                 G g  g +l+tAAG ++G ++++g+++ +++ +g e ++ 
  CTQ28421.1  79 G-GGTGRSLATAAGAVAGGVAGQGVQGAMNKTQGVELEIR 117
                 2.224668**********************9886554444 PP

>> Bacteriocin_IIc  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  21.4     0.013        29      17      59 ..      55      99 ..      43     102 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.013
  Bacteriocin_IIc 17 GG..kcaqgtvggivggalaGaatGaatlgilgaavGavvGavvG 59
                      G  ++a g +gg+v+g+  G ++G+ t+  l++a+Gav+G+v+G
       CTQ28421.1 55 SGddSNAIGAIGGAVLGGFLGNTIGGGTGRSLATAAGAVAGGVAG 99
                     566677888899999999999999999*****************9 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  11.1   0.00079       1.8       9      36 ..      61      83 ..      60      87 .. 0.92
   2 ?    2.0  11.1      0.08   1.8e+02      13      30 ..      89     106 ..      82     107 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00079
  Gly-zipper_OmpA  9 alGAaaGAavGaitGsaGtGAaiGAasG 36
                     a+GA++GA++G++      G  iG+++G
       CTQ28421.1 61 AIGAIGGAVLGGFL-----GNTIGGGTG 83
                     89************.....999999998 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.08
  Gly-zipper_OmpA  13 aaGAavGaitGsaGtGAa 30 
                      aaGA+ G+++G+  +GA+
       CTQ28421.1  89 AAGAVAGGVAGQGVQGAM 106
                      99********99999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1202.39
//
Query:       CTQ28422.1  [L=453]
Description: Diguanylate cyclase (GGDEF) domain-containing protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-73  245.8  37.6    3.5e-73  245.8  37.6    1.6  2  MASE4         Membrane-associated sensor, integral membrane d
    4.5e-45  153.3   0.1    6.2e-45  152.8   0.1    1.2  1  GGDEF         Diguanylate cyclase, GGDEF domain


Domain annotation for each model (and alignments):
>> MASE4  Membrane-associated sensor, integral membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1     0.054   4.9e+02     107     140 ..       8      42 ..       3      44 .. 0.79
   2 !  245.8  37.6     4e-77   3.5e-73       2     239 .]      40     277 ..      39     277 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.054
       MASE4 107 srknkilllliillfllal.lllahllSshseelt 140
                   k+ il+++i+ll  +++  ++a +++s+s++ +
  CTQ28422.1   8 IVKRLILYICICLLAGIGIsGMTAFFHTSFSSTSS 42 
                 55777889999999999999999999999988765 PP

  == domain 2  score: 245.8 bits;  conditional E-value: 4e-77
       MASE4   2 llplllpvltiallvldliiallllmqylcdkkrlyllilafAFlgsalllietllvfpgvfeakgllelnyndavifYlfRhlsfavlillalllykk 100
                 ++  l+p+lt +l+v+++ ia+++ m+y++ k+rlyl++++f F+ sall+++tl+++p++++++ +  +n+ndavi+Y+fR++++avl++++++ly +
  CTQ28422.1  40 TSSILFPLLTSFLMVFHITIACFMGMKYWSSKRRLYLTPVSFGFACSALLMLGTLSSYPDWLTCNPAPVVNQNDAVIYYFFRNIMMAVLFMSSIILYYF 138
                 56789********************************************************************************************** PP

       MASE4 101 rksklesrknkilllliillfllallllahllSshseeltldiidnktenfsalwssgilllLialwlvalllllivtrlrnifwlsltllclsyiltl 199
                 r++ ++s k ++l++  ++lf+l++++l++l+Sshs++l++++id+ + +f++lw+s+i++lL+a+w+++l+ll+   +lrnifw+s++++c +y++tl
  CTQ28422.1 139 RQRIMHSWKAHVLTFTACILFTLTIIVLSWLYSSHSPWLSVNFIDDLSHTFTPLWQSIIGWLLMAVWFITLILLISLSKLRNIFWFSGAFFCSAYLFTL 237
                 *************************************************************************************************** PP

       MASE4 200 lllllaeeresvgWYaaRlfevvstlvllliLlydvfkly 239
                 ++ll++    + +WY+aR+fe+++tl+l+l+Ll+dvf ly
  CTQ28422.1 238 FQLLSTAGELDQTWYQARFFETLCTLFLILVLLVDVFILY 277
                 ***************************************9 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.8   0.1   6.9e-49   6.2e-45       2     161 .]     292     444 ..     291     444 .. 0.96

  Alignments for each domain:
  == domain 1  score: 152.8 bits;  conditional E-value: 6.9e-49
                 SB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHHH CS
       GGDEF   2 ahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaaela 100
                   D+lT+L+NR+++ ++l+q+l++++  q++l+vl+ dld+Fk+ind+yGh +GD+v+q +a+ L+s+ r +d +aR+gg+eFa+ll +t ++ea+++a
  CTQ28422.1 292 IRDPLTRLYNRSFFYDTLNQQLAKVNA-QHPLSVLISDLDHFKRINDSYGHVAGDKVIQFAASVLESHSRVDDAAARIGGEEFALLLVNTGEKEAQAIA 389
                 57***********************87.9********************************************************************** PP

                 HHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSSC CS
       GGDEF 101 erirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrnr 161
                 erir ++++ + +      +  +tis+G++++  ++  ++e  +++Adea+yeaK++grn+
  CTQ28422.1 390 ERIRLAVSAGESH-----LPERMTISMGVYTTY-DNSVTAEACVQRADEAMYEAKNNGRNQ 444
                 ****999998885.....55679*********6.*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1207  (0.0673211); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 3008.62
//
Query:       CTQ28423.1  [L=144]
Description: DNA-binding transcriptional activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-19   67.3   1.3    1.5e-18   66.5   0.2    1.9  2  MarR            MarR family
    4.4e-12   46.3   0.6    1.7e-11   44.5   0.1    2.0  2  HTH_27          Winged helix DNA-binding domain
    2.5e-11   43.3   0.2    5.7e-11   42.1   0.1    1.7  2  MarR_2          MarR family
    3.9e-05   23.5   1.1    6.9e-05   22.8   0.3    1.9  2  HTH_Crp_2       Crp-like helix-turn-helix domain
    0.00015   21.9   0.4     0.0035   17.5   0.1    2.2  2  B-block_TFIIIC  B-block binding subunit of TFIIIC
     0.0015   18.3   1.0     0.0032   17.3   0.2    2.0  3  HxlR            HxlR-like helix-turn-helix
     0.0031   17.3   0.4      0.093   12.6   0.0    2.8  3  HTH_5           Bacterial regulatory protein, arsR family
     0.0034   16.9   0.5      0.011   15.3   0.1    2.0  2  HTH_24          Winged helix-turn-helix DNA-binding
     0.0039   17.1   0.1      0.022   14.7   0.0    2.0  2  TrmB            Sugar-specific transcriptional regulator TrmB
  ------ inclusion threshold ------
       0.01   15.8   0.6      0.061   13.3   0.0    2.4  3  HTH_36          Helix-turn-helix domain
      0.015   15.4   0.2      0.017   15.2   0.2    1.2  1  Replic_Relax    Replication-relaxation
      0.016   14.8   1.0      0.033   13.9   0.0    2.0  3  GntR            Bacterial regulatory proteins, gntR family
      0.022   14.5   0.6       0.27   10.9   0.1    2.1  2  DUF4423         Domain of unknown function (DUF4423)
      0.025   14.6   0.5       0.13   12.3   0.0    2.3  3  HTH_20          Helix-turn-helix domain
      0.032   14.0   0.0      0.091   12.5   0.0    1.7  1  LexA_DNA_bind   LexA DNA binding domain
      0.063   13.1   0.5       0.12   12.3   0.5    1.5  1  DUF4756         Domain of unknown function (DUF4756)
      0.076   13.1   0.3       0.23   11.6   0.0    1.8  2  RsbU_N          Phosphoserine phosphatase RsbU, N-terminal do
        0.1   12.8   0.0       0.22   11.8   0.0    1.5  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.15   12.0   0.9       0.93    9.5   0.1    2.7  2  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.2   1.6e-21   1.5e-18       1      58 [.      29      87 ..      29      88 .. 0.98
   2 ?   -1.4   0.1       2.4   2.3e+03      37      44 ..     129     136 ..     122     136 .. 0.71

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 1.6e-21
                --HHHHHHHHHHHHSTT.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR  1 ltltqfviLrilyeqgp.lsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58
                lt+t++v+L+++++ +p +s+++Lak++g++++++ r+ld+Le+kGli+R+ + +DrR+
  CTQ28423.1 29 LTQTHWVTLHNIHQLPPeQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRA 87
                8*********************************************************7 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.4
                 HHHHHHHT CS
        MarR  37 vldrLekk 44 
                 ++++Le++
  CTQ28423.1 129 LIRKLEQN 136
                 68888875 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.1   1.8e-14   1.7e-11       1      67 [.      29      95 ..      29      96 .. 0.93
   2 ?   -0.4   0.0       1.7   1.6e+03       2      16 ..     119     133 ..     118     139 .. 0.69

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 1.8e-14
      HTH_27  1 ltrqqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdk 67
                lt+ ++++Lh+i     ++++ +l+++  +e+ + +  l++L+ekGL+ r++++ drr+kr++lT+k
  CTQ28423.1 29 LTQTHWVTLHNIHQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEK 95
                7999*********66666666*********************************************9 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.7
      HTH_27   2 trqqalv.Lhlirhrr 16 
                 + q++ + Lhlir  +
  CTQ28423.1 119 SKQEVETlLHLIR-KL 133
                 6788888788887.44 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   6.1e-14   5.7e-11       3      62 .]      29      87 ..      27      87 .. 0.96
   2 ?   -2.7   0.0       6.1   5.8e+03      32      42 ..     117     127 ..     116     135 .. 0.52

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 6.1e-14
                --HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  3 ltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                lt +++  L++++  p++  ++ +la++ g++++++ r+l+ L+++GL+ r+++  D+Ra
  CTQ28423.1 29 LTQTHWVTLHNIHQLPPE-QSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRA 87
                89**************97.7***************************************7 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.1
                 TSSHHHHHHHH CS
      MarR_2  32 glsksavsril 42 
                 g+sk+ v  +l
  CTQ28423.1 117 GVSKQEVETLL 127
                 45555554443 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.3   7.3e-08   6.9e-05      18      54 ..      43      79 ..      10      94 .. 0.72
   2 ?   -2.4   0.0       5.1   4.9e+03      36      45 ..     124     133 ..     115     140 .. 0.57

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 7.3e-08
                EEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 18 ielpltqeelAsmlGltretvsrilseLkreglisrg 54
                +    +q +lA  +G+ + ++ r+l +L+++glisr+
  CTQ28423.1 43 LPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQ 79
                34457899***************************64 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.1
                 HHHHHHHHHH CS
   HTH_Crp_2  36 etvsrilseL 45 
                 et+  ++++L
  CTQ28423.1 124 ETLLHLIRKL 133
                 3444444444 PP

>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   3.7e-06    0.0035      21      54 ..      49      82 ..      47      95 .. 0.87
   2 ?    2.5   0.0      0.17   1.6e+02      24      45 ..     115     136 ..     105     138 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.7e-06
  B-block_TFIIIC 21 qsdLakeskqdprslfyrlksLekkgLIvkqsii 54
                    q +Lak+++++  sl   l+ Le+kgLI +q+  
      CTQ28423.1 49 QIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCA 82
                    889****************************984 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.17
  B-block_TFIIIC  24 LakeskqdprslfyrlksLekk 45 
                     L+ +skq+++ l +++++Le++
      CTQ28423.1 115 LSGVSKQEVETLLHLIRKLEQN 136
                     67899**************997 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.9   1.8e+03      32      59 ..      16      45 ..       7      48 .. 0.58
   2 !   17.3   0.2   3.4e-06    0.0032      22      80 ..      50     104 ..      29     114 .. 0.79
   3 ?   -2.3   0.0       4.3     4e+03      34      46 ..     124     136 ..     110     139 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.9
                -HHHHHHHHHHHH..HTTSEEEEEESSSS- CS
        HxlR 32 sqkmLaqrLreLe..qdglierevypevPp 59
                 + ++ +rL+ Le  q + +  + +++ Pp
  CTQ28423.1 16 WRALIDHRLKPLEltQTHWVTLHNIHQLPP 45
                555666777755511555666666666665 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 3.4e-06
                 HHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGGHHHHHHHH CS
        HxlR  22 selkralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrslepvlqelk 80 
                  +l++a+ +i q  L+++L +Le++gli+r++  +       +ltek + l + +   +
  CTQ28423.1  50 IQLAKAI-GIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLINEM---E 104
                 5788888.9*************************999999999999887655444...3 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 4.3
                 HHHHHHHHHHHHT CS
        HxlR  34 kmLaqrLreLeqd 46 
                 ++L + +r+Leq+
  CTQ28423.1 124 ETLLHLIRKLEQN 136
                 4566667777775 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.38   3.6e+02      19      39 ..       7      27 ..       7      28 .. 0.90
   2 !   12.6   0.0   9.9e-05     0.093      20      46 ..      51      77 ..      46      78 .. 0.94
   3 ?   -0.5   0.0       1.2   1.2e+03       2      16 ..     109     124 ..     108     136 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.38
                HHHHHHHTS-HHHHHHHHHHH CS
       HTH_5 19 celaeelglsqstvShHLkkL 39
                ++la+ +++ ++ ++h Lk L
  CTQ28423.1  7 SDLARLVRVWRALIDHRLKPL 27
                79**************99977 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 9.9e-05
                HHHHHHTS-HHHHHHHHHHHHHTTSEE CS
       HTH_5 20 elaeelglsqstvShHLkkLreaGLVe 46
                +la+++g+ q+ + + L +L+e GL++
  CTQ28423.1 51 QLAKAIGIEQPSLVRTLDQLEEKGLIS 77
                8************************97 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.2
                 HHHHHHHHHHTTSS.E CS
       HTH_5   2 ptRlkILklLaege.l 16 
                 +tR +IL+ ++++e  
  CTQ28423.1 109 KTRDEILSGVSKQEvE 124
                 6888999999987745 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.1e-05     0.011      16      47 ..      45      76 ..      45      77 .. 0.95
   2 ?   -2.0   0.1       2.8   2.6e+03      33      43 ..     125     135 ..     123     136 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
      HTH_24 16 prisqreLAerlglSpstvnrrlkrLeeeGlI 47
                p  sq +LA+++g+ ++ + r l++Lee+GlI
  CTQ28423.1 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLI 76
                6689***************************9 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.8
      HTH_24  33 tvnrrlkrLee 43 
                 t++  +++Le+
  CTQ28423.1 125 TLLHLIRKLEQ 135
                 66778999997 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.3e-05     0.022      27      56 ..      51      80 ..      46      92 .. 0.91
   2 ?   -0.5   0.0       1.2   1.1e+03       5      24 ..     117     136 ..     116     142 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.3e-05
                HHCCCTTSSCHCHHHHHHHHHHCTSEEEES CS
        TrmB 27 eiaeelgvprskvYevLrsLedkGlVerek 56
                ++a+++g+++++  ++L +Le+kGl+ r+ 
  CTQ28423.1 51 QLAKAIGIEQPSLVRTLDQLEEKGLISRQT 80
                689***********************9985 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.2
                 HHHHHCCCHCHHHHHHCCCH CS
        TrmB   5 GLseyEakvYlaLlklgpat 24 
                 G s+ E+++ l L+++ + +
  CTQ28423.1 117 GVSKQEVETLLHLIRKLEQN 136
                 77899999999998665555 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.5e-05     0.061      27      55 .]      48      76 ..      38      76 .. 0.92
   2 ?   -3.3   0.1       9.7   9.1e+03      34      46 ..      79      91 ..      77      92 .. 0.73
   3 ?   -0.4   0.0       1.2   1.1e+03      35      49 ..     116     130 ..     114     136 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.5e-05
      HTH_36 27 sqetlakrlglsknTvsraikeLeqlGyi 55
                sq  lak+ g+   + +r ++ Le++G+i
  CTQ28423.1 48 SQIQLAKAIGIEQPSLVRTLDQLEEKGLI 76
                8899***********************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.7
      HTH_36 34 rlglsknTvsrai 46
                +++ s++ + r++
  CTQ28423.1 79 QTCASDRRAKRIK 91
                6778888888876 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.2
      HTH_36  35 lglsknTvsraikeL 49 
                 +g+sk+ v + + + 
  CTQ28423.1 116 SGVSKQEVETLLHLI 130
                 688888665554433 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.2   1.8e-05     0.017      13      92 ..      50     124 ..      37     143 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-05
  Replic_Relax  13 rqiarllfashratarrrLarLrelgllsr.lrkrvggarggsepyvYaLtpkGarllaaqra.epeprskrdrrereassr 92 
                    q+a+++  ++ + + r L +L+e+gl+sr +  ++++        +  Lt+k++ l++++++   + r+++ +  ++   +
    CTQ28423.1  50 IQLAKAIGIEQPS-LVRTLDQLEEKGLISRqTCASDRR------AKRIKLTEKAEPLINEMEEvIGKTRDEILSGVSKQEVE 124
                   5999999999999.****************55555333......34699*********666555333344444444444444 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.5e-05     0.033      23      57 ..      42      79 ..      37      82 .. 0.88
   2 ?   -2.8   0.0       5.5   5.2e+03       3      17 ..     104     118 ..     103     121 .. 0.76
   3 ?   -3.4   0.1       8.2   7.8e+03       6      15 ..     130     139 ..     127     141 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.5e-05
                B---HH...HHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        GntR 23 kLPser...eLaaefgVsrttvReALrrLeaeglverr 57
                +LP+e+   +La+++g+  +++ + L++Le++gl+ r+
  CTQ28423.1 42 QLPPEQsqiQLAKAIGIEQPSLVRTLDQLEEKGLISRQ 79
                5777774447*************************997 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.5
                 HHHHHHHHHHHHTTS CS
        GntR   3 eqvyerLredIlsge 17 
                 e+v  + r++Ilsg+
  CTQ28423.1 104 EEVIGKTRDEILSGV 118
                 567777889999986 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 8.2
                 HHHHHHHHHT CS
        GntR   6 yerLredIls 15 
                  ++L++ Il+
  CTQ28423.1 130 IRKLEQNILD 139
                 5678888775 PP

>> DUF4423  Domain of unknown function (DUF4423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00029      0.27      24      75 ..      35      82 ..      28     103 .. 0.80
   2 ?    1.9   0.0      0.17   1.6e+02     125     150 ..     117     142 ..     112     144 .] 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
     DUF4423 24 pvirellplkdfkadpeelakrlrpkisaeevekalefLlklgllkkdedgk 75
                ++++++ +l+++ ++  +lak+++  i +    ++l+ L++ gl+ ++    
  CTQ28423.1 35 VTLHNIHQLPPE-QSQIQLAKAIG--IEQPSLVRTLDQLEEKGLISRQTC-A 82
                567778889999.88889******..********************9986.4 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.17
     DUF4423 125 aiskedyekikkeirefrkkilaiae 150
                 ++sk++ e + + ir++ ++il++ +
  CTQ28423.1 117 GVSKQEVETLLHLIRKLEQNILDLQA 142
                 89999************999998866 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       2.8   2.7e+03      29      49 ..       8      28 ..       7      29 .. 0.74
   2 ?   12.3   0.0   0.00014      0.13      29      57 ..      51      79 ..      42      80 .. 0.92
   3 ?   -1.8   0.0       3.5   3.3e+03      40      49 ..     125     134 ..     112     139 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.8
                HHHHHHTS-HHHHHHHHHHHH CS
      HTH_20 29 elaerldlskntlsyHLrvLe 49
                +la+++++ ++ ++++L+ Le
  CTQ28423.1  8 DLARLVRVWRALIDHRLKPLE 28
                677777777777888888886 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00014
                HHHHHHTS-HHHHHHHHHHHHHCTTEEEE CS
      HTH_20 29 elaerldlskntlsyHLrvLeeagLvevv 57
                +la+++++ + +l + L++Lee gL+ ++
  CTQ28423.1 51 QLAKAIGIEQPSLVRTLDQLEEKGLISRQ 79
                89************************876 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.5
                 HHHHHHHHHH CS
      HTH_20  40 tlsyHLrvLe 49 
                 tl + +r+Le
  CTQ28423.1 125 TLLHLIRKLE 134
                 3444448886 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.7e-05     0.091      22      60 ..      41      80 ..      36      85 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.7e-05
                   HSS--..-HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GG CS
  LexA_DNA_bind 22 tgypP..sireiaralglkSpsaveehLkaLerKGyierdp 60
                   ++ pP  s  ++a+a+g++ ps v   L  Le KG+i r+ 
     CTQ28423.1 41 HQLPPeqSQIQLAKAIGIEQPSLV-RTLDQLEEKGLISRQT 80
                   5778833445669******88877.57**********9986 PP

>> DUF4756  Domain of unknown function (DUF4756)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   0.00012      0.12      78     139 ..      76     139 ..      56     142 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
     DUF4756  78 issskartsakasg.nldvlqerviyr.kaiseksdeeivalvikqrteaalefqrsveqsleq 139
                 is  ++ +  +a + +l    e +i +   +  k+ +ei++ v kq  e+ l + r +eq +  
  CTQ28423.1  76 ISRQTCASDRRAKRiKLTEKAEPLINEmEEVIGKTRDEILSGVSKQEVETLLHLIRKLEQNILD 139
                 555544444444333555556666654267999***************************8765 PP

>> RsbU_N  Phosphoserine phosphatase RsbU, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00024      0.23      19      59 ..       9      49 ..       5      53 .. 0.84
   2 ?   -1.8   0.1       3.6   3.4e+03       7      29 ..     115     137 ..     109     141 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
                HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH-TTS-HHHH CS
      RsbU_N 19 LyeaeelsrellekgispeeivelHkevleelskdlpedvq 59
                L+    + r+l+ ++++p+e++++H   l ++ +  pe+ q
  CTQ28423.1  9 LARLVRVWRALIDHRLKPLELTQTHWVTLHNIHQLPPEQSQ 49
                5566677799*******************999998777655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.6
                 HHHHHHH--HHHHHHHHHHHHHH CS
      RsbU_N   7 LkeyletqdeqsLyeaeelsrel 29 
                 L+   +++ e+ L+ + +l +++
  CTQ28423.1 115 LSGVSKQEVETLLHLIRKLEQNI 137
                 55555566666666666665555 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00023      0.22      26      53 ..      50      77 ..      37      80 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00023
                    HHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 26 kdlaerLnvspssVsemlkkLekdGyve 53
                     +la++++++ +s   +l  Le++G++ 
      CTQ28423.1 50 IQLAKAIGIEQPSLVRTLDQLEEKGLIS 77
                    58***********************985 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00098      0.93      20      40 ..      53      73 ..      48      97 .. 0.77
   2 ?   -1.7   0.1       3.1     3e+03      30      39 ..     126     135 ..     124     137 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00098
                HHHHTS-HHHHHHHHHHHHHH CS
       HTH_1 20 AeeLglsqpavsrqikrLEee 40
                A++ g+ qp++ r + +LEe 
  CTQ28423.1 53 AKAIGIEQPSLVRTLDQLEEK 73
                899****************94 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.1
                 HHHHHHHHHH CS
       HTH_1  30 vsrqikrLEe 39 
                 + + i++LE+
  CTQ28423.1 126 LLHLIRKLEQ 135
                 6688999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1133.54
//
Query:       CTQ28424.1  [L=78]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-12   46.9   6.4      2e-12   46.9   6.4    1.4  2  DUF1656   Protein of unknown function (DUF1656)


Domain annotation for each model (and alignments):
>> DUF1656  Protein of unknown function (DUF1656)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   6.4   1.1e-16     2e-12       5      56 .]      19      70 ..      16      70 .. 0.95
   2 ?   -0.3   0.1     0.063   1.1e+03      19      25 ..      69      75 ..      65      78 .] 0.38

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.1e-16
     DUF1656  5 gGvyvPpllvlallAllltlllrrllarlglyrlvWhpaLfdlAlfvcllgl 56
                + vy+Ppl+ ++ll+++++l l+r l+ + +   +Whp L+dl+lf++ ++l
  CTQ28424.1 19 ASVYFPPLFKAVLLGFFIWLFLHRQLRDWMYAGDIWHPLLMDLSLFALSVCL 70
                68*********************************************98876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.063
     DUF1656 19 Allltll 25
                +l+l ll
  CTQ28424.1 69 CLALVLL 75
                2333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 628.91
//
Query:       CTQ28425.1  [L=298]
Description: undecaprenyl pyrophosphate phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-17   60.8   9.8    1.6e-16   59.9   0.7    3.0  3  Biotin_lipoyl_2  Biotin-lipoyl like
    2.5e-16   60.3   0.8    6.1e-10   39.7   0.0    2.8  3  HlyD_3           HlyD family secretion protein
      3e-15   56.0   6.3    6.7e-14   51.6   6.3    2.2  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    2.9e-06   27.1   1.2    5.8e-06   26.1   1.2    1.6  1  HlyD             HlyD membrane-fusion protein of T1SS
    0.00015   21.5   0.4       0.84    9.5   0.1    2.7  3  Biotin_lipoyl    Biotin-requiring enzyme
      0.006   15.4   0.0      0.021   13.6   0.0    1.7  2  HlyD_2           HlyD family secretion protein


Domain annotation for each model (and alignments):
>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.7   5.3e-20   1.6e-16       1      50 []      41      90 ..      41      90 .. 0.97
   2 ?   -4.2   1.3       5.5   1.7e+04      39      46 ..      95     102 ..      91     103 .. 0.53
   3 !    6.6   0.0    0.0023       6.8       4      27 ..     165     188 ..     162     198 .. 0.86

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 5.3e-20
  Biotin_lipoyl_2  1 evvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50
                     e+v I+++vsG + qlnV+d+qrVkaG vL+++D++ ++ a+  a+aqla
       CTQ28425.1 41 EQVGITPQVSGSILQLNVTDNQRVKAGEVLFTIDDTPYRIAVLNAQAQLA 90
                     7899********************************************96 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 5.5
  Biotin_lipoyl_2  39 qlalaqae 46 
                      ++a+aqae
       CTQ28425.1  95 EVAKAQAE 102
                      34555555 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0023
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaG 27 
                       ++apv+G V+ l  + G++  +G
       CTQ28425.1 165 VVKAPVDGWVTNLSTRVGDYATTG 188
                      589****************98888 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3   1.2e-06    0.0037       3      49 ..      46      91 ..      44     140 .. 0.70
   2 !   39.7   0.0   2.1e-13   6.1e-10       1      82 [.     165     245 ..     165     277 .. 0.89
   3 ?   -0.9   0.0      0.92   2.7e+03      46      78 ..     260     288 ..     253     292 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.2e-06
      HlyD_3  3 rApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgs 49
                +  v+G + +lnv+ ++ v ag++l++i +   + + +  ++a+l++
  CTQ28425.1 46 TPQVSGSILQLNVTDNQRVKAGEVLFTIDD-TPYRIAVLNAQAQLAK 91
                6689************************97.3443333333333333 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 2.1e-13
      HlyD_3   1 tlrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptv.da 82 
                 +++ApvdG v+ l+ ++g++ + g +++ +++  ++ v  +  ++ l+ i+ +g+++++ l  ++++tlkg + +i++ + d+
  CTQ28425.1 165 VVKAPVDGWVTNLSTRVGDYATTGHPVFALVDSHSFYVLGYFEETKLRHIR-IGDPAQIILY-SNQQTLKGHVASIGRAIvDQ 245
                 699***********************************************7.*********8.4458**********976333 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.92
      HlyD_3  46 dlgsikkkgqkvtlkldqgsdytlkgkierisp 78 
                 ++++++   q+v +++  +   tl++ ++ +s 
  CTQ28425.1 260 NIPWVR-LAQRVPVRIA-FD--TLPADVTLVSG 288
                 678887.4555555554.21..67777777766 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   6.3   2.2e-17   6.7e-14      19     188 ..      42     242 ..      33     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 2.2e-17
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX.............................XXXXXXXX CS
    HlyD_D23  19 larvsarveGwveklyvnatgdkVkkGqpLael....yspelvaaqeeyllalkakkklkkke............................lleaarer 85 
                 ++ ++++v+G + +l+v+   ++Vk+G+ L+++    y   +++aq+++ +a+++  k+++++                             l++a+  
  CTQ28425.1  42 QVGITPQVSGSILQLNVT-DNQRVKAGEVLFTIddtpYRIAVLNAQAQLAKAQAEVAKAQAEQskaasearrrrslsqnaisaedlenvntALNTATTT 139
                 56799************9.9*************5444556899********999544444444455666777888888888999999999988888899 PP

                 XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  86 Lrllgvseeqiae.lektgkvqktvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdy 183
                 L + +      ++ l++ +   +++ vkap++G Vt+++ r G+y+++g ++f + d  + +v     e++l+ +++g+++++ +   +++t++G+v+ 
  CTQ28425.1 140 LAAARAGVGVTEAaLKHAQWQLSQTVVKAPVDGWVTNLSTRVGDYATTGHPVFALVDSHSFYVLGYFEETKLRHIRIGDPAQIILY-SNQQTLKGHVAS 237
                 988766555554404445555577889********************************************************886.6778*******9 PP

                 XXXXX CS
    HlyD_D23 184 iyptv 188
                 i   +
  CTQ28425.1 238 IGRAI 242
                 98765 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   1.2     2e-09   5.8e-06      12      76 ..      25     293 ..      12     296 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2e-09
                 E.................................................................................................. CS
                 x.................................................................................................. RF
        HlyD  12 a.................................................................................................. 12 
                                                                                                                    
  CTQ28425.1  25 Nfytqspwtrdgkvraeqvgitpqvsgsilqlnvtdnqrvkagevlftiddtpyriavlnaqaqlakaqaevakaqaeqskaasearrrrslsqnaisa 123
                 344456666666666666666666666666666666666666666666666666666666666666666677777777777777777777777777777 PP

                 ....................................................................................EEEEEEEECEEEEEE CS
                 ....................................................................................xxxxxxxxxxxxxxx RF
        HlyD  13 ....................................................................................etdldqvrvgqpvev 27 
                                                                                                     et+l+++r+g+p+++
  CTQ28425.1 124 edlenvntalntatttlaaaragvgvteaalkhaqwqlsqtvvkapvdgwvtnlstrvgdyattghpvfalvdshsfyvlgyfeETKLRHIRIGDPAQI 222
                 777777777777777777777788888888888888888888888888888888999999999999999999999999999999*************** PP

                 EGCGEEECTTTSEEEEEEECTSB.......................EEEEEEEEEEEETTEEEESSSS-TTE CS
                 xxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  28 rfdAfpqtktgkftgvVvgispd.......................rvpvrvvvekaqgpyyplriglkaga 76 
                 ++   +qt++g++ +  + i ++                       rvpvr+  ++   +++ + +g ++++
  CTQ28425.1 223 ILYSNQQTLKGHVASIGRAIVDQsveqgtglvanikpnipwvrlaqRVPVRIAFDTLPADVTLV-SGTTCTV 293
                 ******************************************************9999998887.7777665 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00028      0.84      44      73 .]      44      73 ..      41      73 .. 0.89
   2 !    9.4   0.0   0.00031      0.93      42      73 .]     163     194 ..     162     194 .. 0.92
   3 ?   -3.1   0.1       2.4   7.1e+03      60      70 ..     243     253 ..     232     255 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00028
                   EEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 44 eieapkaGvvkeilvkeGdtvevgdllaki 73
                    i+ +++G + ++ v +++ v++g++l++i
     CTQ28425.1 44 GITPQVSGSILQLNVTDNQRVKAGEVLFTI 73
                   5778899********************987 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00031
                    EEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  42 emeieapkaGvvkeilvkeGdtvevgdllaki 73 
                    ++ ++ap++G v+ +   +Gd  ++g +++ +
     CTQ28425.1 163 QTVVKAPVDGWVTNLSTRVGDYATTGHPVFAL 194
                    6789************************9865 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.4
                    TTEEE-TTCEE CS
  Biotin_lipoyl  60 eGdtvevgdll 70 
                    ++++ve+g+ l
     CTQ28425.1 243 VDQSVEQGTGL 253
                    56667777655 PP

>> HlyD_2  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.16   4.9e+02      76      98 ..      55      77 ..      38     145 .. 0.64
   2 !   13.6   0.0   7.1e-06     0.021     253     304 ..     185     238 ..     171     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.16
      HlyD_2 76 kyfvkeGdkvkkgkkvaeiqkse 98
                +  v +  +vk g+ +++i ++ 
  CTQ28425.1 55 QLNVTDNQRVKAGEVLFTIDDTP 77
                44555566666666666665543 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 7.1e-06
      HlyD_2 253 vnkGdpifkivnnqkwYlvtlvekeevkslkegk..kvkvkvddeeinakvyki 304
                    G+p+f +v+ ++ Y++ + e+ ++ +++ g   ++++ +++++++++v  i
  CTQ28425.1 185 ATTGHPVFALVDSHSFYVLGYFEETKLRHIRIGDpaQIILYSNQQTLKGHVASI 238
                 578*****************************96337888899999**999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1632  (0.0910257); expected 358.6 (0.02)
Passed bias filter:                      851  (0.047465); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2160.88
//
Query:       CTQ28426.1  [L=674]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.3e-165  551.8  39.0   2.6e-165  551.7  39.0    1.0  1  FUSC         Fusaric acid resistance protein family
      6e-15   55.5  11.2      6e-15   55.5  11.2    2.8  2  FUSC_2       Fusaric acid resistance protein-like
     0.0063   16.7   4.7     0.0063   16.7   4.7    2.9  2  ArAE_1       Aromatic acid exporter family member 1
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.26   11.1   0.0    1.5  1  Gemini_AL3   Geminivirus AL3 protein
        2.3    6.9   5.0        4.6    5.9   5.0    1.4  1  ALMT         Aluminium activated malate transporter


Domain annotation for each model (and alignments):
>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  551.7  39.0  7.2e-169  2.6e-165       1     656 [.      20     663 ..      20     664 .. 0.98

  Alignments for each domain:
  == domain 1  score: 551.7 bits;  conditional E-value: 7.2e-169
        FUSC   1 dwlFalKtllAalLALyiAlrleLpqPywAmtTVfiVsqPlsGavlsKslyRllGTllGaaaavllvalfvqapllfllalalWiglclalslldrnfr 99 
                 +w++al++ +A++LAL iA++l+L++PywAmt++++Vs P++G v+sKs+ R++G+llGa+aa+ll +++ ++p+lfl+ ++ W++lc+++++l  n+ 
  CTQ28426.1  20 QWRYALRNGIAMCLALSIAYALDLDEPYWAMTSAAVVSFPTVGGVISKSFGRIAGSLLGACAALLLAGHTLNDPWLFLFSISGWLALCTWACALFTNNV 118
                 6************************************************************************************************** PP

        FUSC 100 sYafvLAGYTaalialpava..dPetvFdiAvaRvseIvlGIvCaalVsalvfPrsvapalrarlrallrdalalaaaalageegaeareaararlaad 196
                 +Yaf LAGYT+a+ia+p+++  d ++++ iA++Rv+e+++GI+C +l+++++ ++s + +l ++l++++ ++l++a+ ++ +e +++ r +a++ ++++
  CTQ28426.1 119 AYAFQLAGYTCAIIAFPVINisDSYELWVIAQSRVCEVIVGILCGGLMMMILPSTSDGSNLLTALKTMHTRLLEHASLLWVPETTDAIR-TAHESVIGQ 216
                 ********************889999***********************************************************9996.********* PP

        FUSC 197 ilalealrsqaayesprirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaaleaaaaaealeaalaalrarlralrralea 295
                 il+++ lr qa + + r+r++++ l+ ll+++l++++++ssl+r+l ++++++a++++ l+ llaela+      ++a+  ++a++ a l+  + a+  
  CTQ28426.1 217 ILTMNLLRIQAFWSHYRFRRQNPLLNYLLHQQLRMTSVISSLRRMLLNWPDAPANTRQVLESLLAELAT------PHADSYHVARILAPLAPRQDADY- 308
                 ********************************************************999**********......999999*********99999999. PP

        FUSC 296 dadtaalllarlaellaelaqllaslraleaaiaa....arraerlarhrdhlaallnglraalaillaglfWiatgWpsGatavllaaivcslfatld 390
                    ++ +++arl+ +++ +++  +++r+ e+a a       +a++larh+d ++allng+r+++a++++g++ i t+W+s+a a++la+i+c+l++ + 
  CTQ28426.1 309 ---RHIAFWARLRYFCRIYLESSRWIRRVENASAIaefnVPAAPPLARHTDQAEALLNGVRTFCALVAIGAWGISTQWTSCAAALTLASICCVLYSVSA 404
                 ...***************************998878999888899****************************************************** PP

        FUSC 391 nPapallqfligtllavlaallllfvvlPhvdgfplLvlvl.applllgglllarprlagiglglavffalllapqnamtydfatflnsalAlllGvll 488
                 +P + l+ ++ + +l +l++++++f+++ +v++ ++++l+l ++++++ +l l+ p++ag++ +l+vf+ +++a++n+++yd+a+f+n++l+ ++Gv++
  CTQ28426.1 405 SPFRSLTLLMQTLVLLSLFSFVVKFGLMVQVTDLWQFLLFLfPLLTTMQLLKLQWPKYAGLWGQLIVFMGSFIAVTNPPVYDYAAFFNDNLSKIVGVGF 503
                 *********************************9999999934556789999*********************************************** PP

        FUSC 489 aavvfrlirpvsaewlarrllralrrdlaraasrpaaeaesrfesrmldrlaqllprlaaapparrellrdglaalrlgravlrLrralera.laaear 586
                 a+++f+++ p s++++ rr++ralrr++++++sr+++++e++fes ++++++ql ++ +  + arr+llr+g+  l+++++v++Lr++  r+ + a++r
  CTQ28426.1 504 AWLAFAVLSPGSDARKGRRHIRALRRHFVDQLSRHPQHSEHEFESLVYHHVSQLSQSKD--ALARRWLLRWGVVLLNCSHVVWQLREWETRSdPLAQVR 600
                 ********************************************************997..99**************************999999**** PP

        FUSC 587 aaldavlaalafrapaaarsarrlrapaaalraldaalaalaaseatsalrralaaLvrlrlalldkasa 656
                 + + ++l++++      +++++++r++a +l++l+++++al+++++++a r+++aa++rl +al++ ++a
  CTQ28426.1 601 DLCINLLRDVM------SERGVQQRPLASTLQELQRICDALNHHHQPAA-RELAAAIWRLYCALSQLEQA 663
                 ***********......999*****************************.***************99886 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5  11.2   1.7e-18     6e-15       1     124 [.      33     163 ..      32     166 .. 0.82
   2 ?   -7.3  12.1         5   1.8e+04      15      99 ..     387     479 ..     365     511 .. 0.50

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 1.7e-18
      FUSC_2   1 lavliaellglwrgeWalitaaivlsptlgasltravqRilGtvlGavlallll.yllpgnlalallvfll.vfli....afflkrnyalafifltlla 93 
                 la+ ia++l+l+ ++Wa+++aa+v  pt+g++  + + Ri+G +lGa++alll  + l  ++ +++ +  +  +++     f+ +  ya++ + +t+ +
  CTQ28426.1  33 LALSIAYALDLDEPYWAMTSAAVVSFPTVGGVISKSFGRIAGSLLGACAALLLAgHTLNDPWLFLFSISGWlALCTwacaLFTNNVAYAFQLAGYTCAI 131
                 577899**********************************************985777777777754433323333333255667889********999 PP

      FUSC_2  94 lllyslaa..gsgnpieialhRlldvliGilia 124
                 +++  + +  +s   + ia +R+++v++Gil++
  CTQ28426.1 132 IAFPVI-NisDSYELWVIAQSRVCEVIVGILCG 163
                 998876.4589999999**************98 PP

  == domain 2  score: -7.3 bits;  conditional E-value: 5
      FUSC_2  15 eWalitaaivlsp.tlgasltravqRilGtvlGavlallll...yllpgn..lalallvfllvfliaffl..krnyalafifltllalllysl 99 
                   al+ a i++   +++as +r +  ++ t++ + l+ +++    +++ +  ++++l++f l+ ++ +++  +++ya+    l +++ +++++
  CTQ28426.1 387 AAALTLASICCVLySVSASPFRSLTLLMQTLVLLSLFSFVVkfgLMVQVTdlWQFLLFLFPLLTTMQLLKlqWPKYAGLWGQLIVFMGSFIAV 479
                 334444444444345555555555555555444433333331121222223566666666665555553322566655555555555555544 PP

>> ArAE_1  Aromatic acid exporter family member 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   4.7   1.8e-06    0.0063       9      83 ..      26     100 ..      23     170 .. 0.73
   2 ?    0.9   4.7      0.13   4.5e+02      29     136 ..     390     506 ..     363     511 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.8e-06
      ArAE_1   9 KtaiavalailiaellgleyavsAgIiailsiqptkkrslrtalerllasvlaliiavvffellGykpiviglvl 83 
                 + +ia++la+ ia++l+l+ +  A   a +   pt    + +++ r+++s+l++  a++++    ++p+ + + +
  CTQ28426.1  26 RNGIAMCLALSIAYALDLDEPYWAMTSAAVVSFPTVGGVISKSFGRIAGSLLGACAALLLAGHTLNDPWLFLFSI 100
                 579**************************999*************************998877777777665443 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.13
      ArAE_1  29 avsAgIiail.siqptkkrslrtalerllasvlaliiavvffellGykpiviglvlllfipltvklkle....egivvssVlv....lhllesksisla 118
                  + A I  +l s++ +  rsl++ ++ l+   l  ++  + +++   + + + l+l+ ++++++ lkl+    +g+   +++     +++ + +  ++a
  CTQ28426.1 390 LTLASICCVLySVSASPFRSLTLLMQTLVLLSLFSFVVKFGLMVQVTDLWQFLLFLFPLLTTMQLLKLQwpkyAGLWGQLIVFmgsfIAVTNPPVYDYA 488
                 456778776658999999999999888765554444444444455556677777777777777777776545577777777652222456666777888 PP

      ArAE_1 119 lllnelllilvGigvall 136
                 +++n  l  +vG+g+a l
  CTQ28426.1 489 AFFNDNLSKIVGVGFAWL 506
                 888888888889888877 PP

>> Gemini_AL3  Geminivirus AL3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.3e-05      0.26      38      92 ..     480     535 ..     469     539 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.3e-05
  Gemini_AL3  38 trtkiyqiqirfnhnlrkaldlhkcflnlvvlss.srrlsGealldrlklrvllyl 92 
                 t+ ++y+    fn nl k++++  ++l + vls  s    G +++  l+ + +  l
  CTQ28426.1 480 TNPPVYDYAAFFNDNLSKIVGVGFAWLAFAVLSPgSDARKGRRHIRALRRHFVDQL 535
                 67789999999********************9962566789999999999987666 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.0    0.0013       4.6      42     171 ..      47     171 ..      21     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0013
        ALMT  42 vWailTVvvvlefsvGATlskGlnRalaTliAGglalgvselasssgkileeivigvsvFiiaalatflrliPaikarYdYgvlvflLTFclvvvsgyr 140
                  Wa+    vv   +vG  +sk + R +++l++ + al+   la ++ +   + +  +s+    al t++       ++  Y++     T +++++   +
  CTQ28426.1  47 YWAMTSAAVVSFPTVGGVISKSFGRIAGSLLGACAALL---LAGHTLN--DPWLFLFSISGWLALCTWACALF--TNNVAYAFQLAGYTCAIIAFPVIN 138
                 5998888888888******************9887776...6666655..67777888877777778765433..345678888888888888777666 PP

        ALMT 141 td...evielAvkRfltiaiGaliclivsifvfP 171
                      e+  +A++R+  +++G+l+   + +++ P
  CTQ28426.1 139 ISdsyELWVIAQSRVCEVIVGILCG-GLMMMILP 171
                 5511145668**********98654.55555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4628.32
//
Query:       CTQ28427.1  [L=173]
Description: superoxide dismutase, Cu, Zn [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-29  100.6   0.6    9.4e-29  100.4   0.6    1.0  1  Sod_Cu    Copper/zinc superoxide dismutase (SODC)


Domain annotation for each model (and alignments):
>> Sod_Cu  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.6   5.3e-33   9.4e-29       4     142 .]      33     172 ..      30     172 .. 0.87

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 5.3e-33
                 SEEEEEEEEEEEECSTTSTCEEEEEEEECSS-STEEEEEEEESSTTTTTT........TGGG-SB-STT-..CSSTT.TTTCS-TTEEEEEEESTTSEE CS
      Sod_Cu   4 gkgevsGtvtftqeeskesgsvevtvevkglppggkhgfHiHengdcsag........fksagghfnptg.kkhgap.ndeerhaGDLgnievdadgta 92 
                 g g++ G+v++t+++    +++e+  +++ lppg khgfHiH+ g+c+++          +aggh++p++  kh++p      h+GDL+ ++v++ g+a
  CTQ28427.1  33 GVGQTIGSVKITETD----RGLEFAPTLRALPPG-KHGFHIHAEGSCQPAmkegkavaAGAAGGHYDPQHtGKHEGPlG--AGHLGDLPLLVVNDAGVA 124
                 457888******876....46***********97.6***********9999******9999******966345665523..69**************** PP

                 EEEEEEESC.BCSTTTBCTTEEEEEESS---TT.SCHHHTTSSSEEEEEEE CS
      Sod_Cu  93 kleittdklvslkgensilgralvihagaDdlg.eskptgnagariacGvI 142
                 +  i + +l +l    ++ g+al++h g D+++  ++p g+ g+r+acGvI
  CTQ28427.1 125 DQPIIAPRLKTLA---EVKGKALMVHVGGDNMAdSPQPLGGGGERFACGVI 172
                 ***9966656666...89**************9899**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1340.11
//
Query:       CTQ28428.1  [L=298]
Description: putative oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-44  150.8   0.0    8.5e-44  149.9   0.0    1.4  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   4.8e-48   8.5e-44       3     292 ..      18     291 ..      16     293 .. 0.92

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 4.8e-48
                   EEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.....--SSSTTSSSS-HH.HHHHHHHHH CS
  Aldo_ket_red   3 glGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.....dlrdaeiksglske.nireslees 93 
                   ++G w+l + +++s+ e +  +++ l+ G++++D A++Yg+ q+e  +Gealk++++ r  + i++K+     +    +i  ++++  +i+ s e+s
    CTQ28428.1  18 VMGYWRLMD-WKMSPGELVSFIEQHLDLGVTTVDHADIYGDYQCEAAFGEALKRAPHLRSRMEIVSKCgiatrARAENTIGHYITDRdHIVLSAEQS 113
                   689999998.6*********************************************************88775333334444443336********* PP

                   HHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHHTT-EEEEB CS
  Aldo_ket_red  94 lkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynll.releeegllelckkkgvpliay 189
                   l++L td++Dlll+Hrpdp ++   ev++a+  l+ +Gk+r++GvSnf+ +q   +++  + +++++qve +++ ++l   g+l+ ++++ ++ +a+
    CTQ28428.1 114 LRNLATDHLDLLLIHRPDPLMD-ADEVAEAFLALHHSGKVRHFGVSNFTPAQFTLLQSRLPFTLATNQVEISPVhQPLLLDGTLDQLQQLRIRPMAW 209
                   **********************.***************************************************999999***************** PP

                   STTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHH.TT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHH CS
  Aldo_ket_red 190 splggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselake.hgvslaqlalryalsqpavgivipgasnieqlednldalelklseee 285
                   s+lggG l +++                      +++ + +el ++a+e +  s++q++++++l  p +  +i+g+ +ie+++  + a +l ++ ++
    CTQ28428.1 210 SCLGGGRLFNEE----------------------GFQALRDELAQVAHElNADSIEQVVYAWVLRLPSQPLPIIGSGKIERVRSAIVAEKLSMTRQQ 284
                   ********9333......................45799**********5555******************************************** PP

                   HHHHHHH CS
  Aldo_ket_red 286 vaeldel 292
                   + +++++
    CTQ28428.1 285 WFRIRKA 291
                   *999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2138.72
//
Query:       CTQ28429.1  [L=79]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-20   71.7   7.1    3.7e-20   71.4   7.1    1.1  1  DUF1289    Protein of unknown function (DUF1289)
  ------ inclusion threshold ------
      0.028   14.4   0.1      0.032   14.2   0.1    1.2  1  DUF2550    Protein of unknown function (DUF2550)
       0.15   11.2   0.2       0.15   11.1   0.2    1.1  1  Flu_B_NS1  Influenza B non-structural protein (NS1)


Domain annotation for each model (and alignments):
>> DUF1289  Protein of unknown function (DUF1289)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   7.1   6.3e-24   3.7e-20       1      47 [.      12      57 ..      12      58 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 6.3e-24
     DUF1289  1 sPCigvCkldpedglClGCgRtldEiaaWssmsdeerravlarleqr 47
                sPC g+C++d e+g+C+GC+R+++E+++W++msd+++++vl+ ++qr
  CTQ28429.1 12 SPCRGICQTD-ERGYCRGCFRSREERFNWQRMSDAQKQEVLRLCRQR 57
                9*********.***********************************9 PP

>> DUF2550  Protein of unknown function (DUF2550)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   5.4e-06     0.032      30      87 ..      15      73 ..       3      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.4e-06
     DUF2550 30 RelpaeggrgWrlGvarYsgeelewyrllslrprPsrvlsRrgle.vegrrepegeeaa 87
                R   ++++rg+  G++r ++e+++w r+++++ +  ++l+R++l    + ++pe++e+ 
  CTQ28429.1 15 RGICQTDERGYCRGCFRSREERFNWQRMSDAQKQEVLRLCRQRLLrKIRANRPEPAEEP 73
                5555788999********************************98633344556666654 PP

>> Flu_B_NS1  Influenza B non-structural protein (NS1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   2.6e-05      0.15      31      67 ..      34      69 ..      17      77 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.6e-05
                HHHHHTTT-S-HHHHHHHHHHHHHHHHHHHHHHHTS- CS
   Flu_B_NS1 31 yerfswqraldypgqdrlhrlkrklesrikthnksep 67
                 erf wqr  d   q+ l+  +++l  +i++ n+ ep
  CTQ28429.1 34 EERFNWQRMSDAQKQEVLRLCRQRLLRKIRA-NRPEP 69
                59*************9998888888888875.56666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 618.09
//
Query:       CTQ28430.1  [L=199]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-13   48.3   0.0    1.3e-12   47.6   0.0    1.2  1  TetR_C_13  Tetracyclin repressor-like, C-terminal domain
    6.7e-11   41.8   0.0    1.1e-10   41.1   0.0    1.4  1  TetR_N     Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.073   13.0   0.0       0.11   12.4   0.0    1.3  1  SPOC       SPOC domain


Domain annotation for each model (and alignments):
>> TetR_C_13  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   2.2e-16   1.3e-12       4     108 ..      84     188 ..      82     194 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 2.2e-16
                 HHHHHHHHHHHHHHHTTTT----HHHHHHHTGGGS-TTHHHHHHHHHHHHHHHHHHHHHHHHCTTSS-TTS-HHHHHHHHHHHHHHHHHHHHHHTSSHH CS
   TetR_C_13   4 erlrafvedakagmeryefkrGCLvGnLgqEvaalpesfrerleevledwqkrvaacleeaqeageiaadadaeelaeffwigWeGAvlRaklerstqP 102
                 +rl a+++++ +++ +++   GCL   L  Ev +l+e++r+++++  +++ + + ++le+ +++g++a d +a +l++++++ W GA l ak++rs++P
  CTQ28430.1  84 DRLLAYYQHTLNQFCQQGIISGCLTVKLSAEVCDLSEDMRAAMDRGASQIIALLGDALEKGRQEGSLAFDGEAMTLSQVLYSLWLGANLQAKITRSATP 182
                 6999*********************************************************************************************** PP

                 HHHHHH CS
   TetR_C_13 103 lelfle 108
                 le+ l+
  CTQ28430.1 183 LESALA 188
                 *98665 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.9e-14   1.1e-10       1      42 [.      13      54 ..      13      59 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.9e-14
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKee 42
                Il+++++l  +rG+ +++++e+ k A v kg++Y+yF+sKe+
  CTQ28430.1 13 ILATGEQLCMHRGFTGMGLSELLKTAEVPKGSFYHYFRSKEA 54
                89***************************************8 PP

>> SPOC  SPOC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.9e-05      0.11      86     106 ..      39      64 ..       6      72 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
                 H.....HHHHHHTTTEEEE.....EE CS
        SPOC  86 e.....lvdYLksKqraGvvnlnksg 106
                 e     ++ Y++sK+++Gv +l+++ 
  CTQ28430.1  39 EvpkgsFYHYFRSKEAFGVALLEHHY 64 
                 133355*************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1543.56
//
Query:       CTQ28431.1  [L=365]
Description: N-ethylmaleimide reductase, FMN-linked [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-87  294.6   0.0    1.2e-87  294.4   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.4   0.0   6.5e-92   1.2e-87       1     342 []       5     344 ..       5     344 .. 0.93

  Alignments for each domain:
  == domain 1  score: 294.4 bits;  conditional E-value: 6.5e-92
                   CCCS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEE CS
  Oxidored_FMN   1 kLFkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvv 97 
                   kLF P+k+g +t+ nR+ map+trlr+ ++g +++ l+ eyy+qra+   +liitea+ ++++ +g+ +apg+++ eqi++w+k+t  vh++++ ++
    CTQ28431.1   5 KLFSPLKVGAVTVPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS--SGLIITEATQISAQAKGYAGAPGLHSPEQIAAWQKITAGVHAENGHIA 99 
                   79********************************************9..99********************************************** PP

                   EEEE--GGGS..SCSTCEC..SS.ESSSSSTTT-...........S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH- CS
  Oxidored_FMN  98 vqlwhlGreakseyladqevdspsdpvaldaqee..........esaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFls 184
                   vqlwh+Gr ++s  ++     +p +p+al a  +          +     ++++l+  ei  ++++f +A  +a++AgfD Ve h+a+GYLl+qFls
    CTQ28431.1 100 VQLWHTGRISHSSLQPGGA--APVAPSALSAGTRtslrdenghaIRVDTSMPRALETAEIPGIVNDFRQAVGNARDAGFDLVELHSAHGYLLHQFLS 194
                   **********888887777..9999999999988889998888733444449********************************************* PP

                   TTT----STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHH.HHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCCT CS
  Oxidored_FMN 185 pksnkrtDeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaet.aqkivllkelekrlkdgkklalvhaaeprkrgagsvrteq 280
                   p  n+rtD+ygGs+enRar +levvdaV +  ++er+g+R+Sp + +++  ++ +    +++l++el+kr +     a++h+ e  + +ag +  + 
    CTQ28431.1 195 PSANQRTDQYGGSVENRARLVLEVVDAVSQEWSAERIGIRVSPIGSFQNVDNGPNEeEDALYLISELAKRGI-----AYLHMSE--PDWAGGKPYS- 283
                   *******************************************99998876665444789*********998.....9999999..6788776655. PP

                   THHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCGG CS
  Oxidored_FMN 281 ekntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpln 342
                   e + ++v+    + +i++g ++ e+ a++  ++g +d va+gR  +a+pdlv +l+k+ pln
    CTQ28431.1 284 EAFRQKVRDRFPGVIIGAGAYTVEK-ANDLINKGLIDAVAFGRDYIANPDLVARLQKKAPLN 344
                   7899********************9.99999**************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2950.88
//
Query:       CTQ28432.1  [L=135]
Description: glyoxalase I, Ni-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-25   88.2   0.0    5.5e-25   88.0   0.0    1.0  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    1.3e-08   35.1   0.0    9.4e-08   32.3   0.0    1.9  2  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
    4.1e-06   27.5   0.0    7.3e-06   26.7   0.0    1.4  1  Glyoxalase_6  Glyoxalase-like domain
     0.0027   17.8   0.0     0.0035   17.4   0.0    1.4  1  CppA_N        CppA N-terminal
  ------ inclusion threshold ------
      0.018   14.9   0.0      0.043   13.7   0.0    1.6  1  Glyoxalase_2  Glyoxalase-like domain
      0.074   13.2   0.0          3    7.9   0.0    2.1  1  Glyoxalase_3  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.0   1.8e-28   5.5e-25       2     128 .]       3     123 ..       2     123 .. 0.90

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 1.8e-28
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEE.EEST..EEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHT CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdn.teet..eglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkea 97 
                 + h++l+vgdl++s+dFYt+vLG+kl++ ++n +  +      ++   +++ +iel++n+  ++++ +           ++ial+v++ ++a++r++++
  CTQ28432.1   3 LLHTMLRVGDLQRSIDFYTNVLGMKLLRTSENpE-YKysLAFVGYGEESETAVIELTYNWGVDSYELGT--------AYGHIALSVDNAAEACERIRQN 92 
                 78*****************************743.334333344555677889****************........8********************* PP

                 TGEEEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase  98 gvkvvaepgrhyfgalysfyfrDpdGillei 128
                 g++v++e g  + g  ++++++DpdG+++e+
  CTQ28432.1  93 GGNVTREAGPVKGGTTVIAFVEDPDGYKIEL 123
                 *****************************96 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   3.1e-11   9.4e-08       2     105 ..       5     108 ..       4     112 .. 0.87
   2 ?    1.7   0.0     0.099     3e+02      38      58 ..     110     129 ..     106     133 .. 0.78

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 3.1e-11
                   EEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETT..EEEEEEEESSTT-THHHTS-EEEEEEEEES-HHHHHHHHCTTTEEEEEE CS
  Glyoxalase_4   2 QigivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgs..vqieLieplegpeflaehgeglhhlaywvddldaavarleeqGfevvqk 96 
                   ++ + V Dl++ +++++++lG++  ++ ++++++++laf+ +g++s    ieL  ++  ++   e g+   h+a+ vd+  +a++r +++G  v+ +
    CTQ28432.1   5 HTMLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGEESetAVIELTYNWGVDSY--ELGTAYGHIALSVDNAAEACERIRQNGGNVTRE 99 
                   6667799************************************99899999*9999999665..99****************************976 PP

                   EE-GGGTT- CS
  Glyoxalase_4  97 gvragaagr 105
                   +  + ++ +
    CTQ28432.1 100 AGPVKGGTT 108
                   533333334 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.099
                   EEEEEEEETTEEEEEEEESST CS
  Glyoxalase_4  38 lafallgsgsvqieLiepleg 58 
                   +af++  +g  +ieLie  + 
    CTQ28432.1 110 IAFVEDPDG-YKIELIEEKDA 129
                   577778887.8*****98775 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.5e-09   7.3e-06       3     105 ..       7     122 ..       5     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.5e-09
  Glyoxalase_6   3 vldaadpaalaaFwaaalgweveree.........aaledpegvgpaaedaatllfqrvpe..................paknrvHldlavedldae 72 
                   +l + d ++ ++F+  +lg+++ r++         a                 +  ++  e                  +     H+ l+v++++++
    CTQ28432.1   7 MLRVGDLQRSIDFYTNVLGMKLLRTSenpeykyslA----------------FVGYGEESEtavieltynwgvdsyelgT--AYGHIALSVDNAAEA 85 
                   6778899*****************994444332220................2222333335666666666677777443..358************ PP

  Glyoxalase_6  73 varlvalGArvlreprdgthgr....vlaDPeGneFc 105
                   ++r+ + G+ v re    ++g+     ++DP+G    
    CTQ28432.1  86 CERIRQNGGNVTREAGPVKGGTtviaFVEDPDGYKIE 122
                   **************9999888899999******8765 PP

>> CppA_N  CppA N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.2e-06    0.0035       3      49 ..       5      56 ..       3      98 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
      CppA_N  3 tpvlrvnnrdlniafyqetlGlklls.een....alavfsdwaeaeelfvie 49
                + +lrv + +  i+fy + lG+kll   en      + f  ++e +e+ vie
  CTQ28432.1  5 HTMLRVGDLQRSIDFYTNVLGMKLLRtSENpeykYSLAFVGYGEESETAVIE 56
                5689********************9523441111234455556666666666 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.4e-05     0.043       4     115 ..       6     125 ..       3     127 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.4e-05
                   ---EES-HHHHHHHHHHTT---EEEE-SSEEEETTS-EE.......EEHHHHHH.-------S.--SS-EEEEEES-HHHHHHHH..GGGS-EEEEE CS
  Glyoxalase_2   4 illvvkdieeskkFYedvlelkikldfGenvsfetgfal.......kedlkeli.nldesiae.qsnnfeLyFevedvdaflqklkeaeniellhel 91 
                   ++l v d+++s +FY +vl +k+     en +++  +a        +  + el+ n   + +e      ++   v++  ++ +++++++  ++  e 
    CTQ28432.1   6 TMLRVGDLQRSIDFYTNVLGMKLLR-TSENPEYKYSLAFvgygeesETAVIELTyNWGVDSYElGTAYGHIALSVDNAAEACERIRQNG-GNVTREA 100
                   678999****************976.46777777776665565322222444444333333333555567778999*********9988.6888899 PP

                   EE-TTS-EEEEEE.-TT--EEEEEE CS
  Glyoxalase_2  92 kekpWgqrvirfy.DpDkhiiEige 115
                      + g +vi f  DpD+  iE+ e
    CTQ28432.1 101 GPVKGGTTVIAFVeDPDGYKIELIE 125
                   999999999887449******9865 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0     0.001         3       3      99 ..       5      93 ..       3     121 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.001
  Glyoxalase_3  3 HvvlavpdleeaaarfarrlGftvtpggehpglgtaNalvmfgdgYlEllav..dpeapaperprlfgldrlakgeglhtlalrtddidataarlraaG 99
                  H++l v+dl++ ++ +++ lG+++   +e p+     + + f       +++  + e++  e    +g d ++ g    ++al++d+++++ +r r++G
    CTQ28432.1  5 HTMLRVGDLQRSIDFYTNVLGMKLLRTSENPEYK---YSLAF-------VGYgeESETAVIELTYNWGVDSYELGTAYGHIALSVDNAAEACERIRQNG 93
                  5666666666666666666666665555555521...11111.......11100222222223334555666666666666666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1071.13
//
Query:       CTQ28433.1  [L=215]
Description: ribonuclease T (RNase T) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-38  131.8   0.0    3.8e-38  131.6   0.0    1.0  1  RNase_T   Exonuclease
    1.2e-05   25.4   0.0    6.8e-05   22.9   0.0    1.8  1  DUF5051   3' exoribonuclease, RNase T-like


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   4.2e-42   3.8e-38       1     165 []      20     194 ..      20     194 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 4.2e-42
                 EEEEEEESSSTTCTTS-EEEEEEEEEETTCC...EEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHH.HHTCEBHHHHHHHHHHHHHHH........TCC CS
     RNase_T   1 vviDlEttgldakekdeiieiaaisidggen...eigetfhfyvkptelakltdecteftgitqem.ldeapsfkevleefkellrkl........all 87 
                 vviD+Et+g++a ++d+++eiaai+++++e     ++et hf+v+p+e+a+l++e+++f+gi++ +  ++a s++++l ++++++rk+        a++
  CTQ28433.1  20 VVIDVETAGFNA-KTDALLEIAAITLKMDEHgwlMPDETLHFHVEPFEGANLQPEALAFNGINPHDpQRGAVSEYDALHAIFKMVRKGmkesdcsrAIM 117
                 8***********.8****************************************************9*******************99*********** PP

                 CETTTCEEEESSHHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHC..HHHHHHHHHTTCHSSSS.TSSHHHHHHHHHHHH CS
     RNase_T  88 vahnaafdvgflraadkrilkkevpkrnqfldtlildkatlkelar..tsldklaeklgleedgr.aHrAldDaeataklf 165
                 vahna fd +f+  a +r   +   krn+f++++++d+a+l++la   t+l k++  +g+++dg  aH+Al+D+e ta+lf
  CTQ28433.1 118 VAHNATFDHSFTMTAAERA-GL---KRNPFHPFVTFDTAALSGLALgqTVLSKACIAAGMPFDGAqAHSALYDTEQTAQLF 194
                 ******************9.55...6****************************************************998 PP

>> DUF5051  3' exoribonuclease, RNase T-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   7.6e-09   6.8e-05       3     165 ..      20     197 ..      19     198 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 7.6e-09
     DUF5051   3 lmiDiEtlgne.etaelvsIGaVff..petG......eFyaeidlesdeeagidaetieWWlkqskearaell...kdtqeakslkdalqaleeFl... 86 
                 ++iD+Et+g + +t +l++I+a+++  +e G      + +  +++   e a+           q ++ + + +   + +  a s  dal a+++ +   
  CTQ28433.1  20 VVIDVETAGFNaKTDALLEIAAITLkmDEHGwlmpdeTLHFHVEP--FEGAN----------LQPEALAFNGInphDPQRGAVSEYDALHAIFKMVrkg 106
                 589******998999********9988777887665533333333..22233..........345555545442333346789999999*****99999 PP

     DUF5051  87 .....ekslkvwangasfDlviLraafel.......lipwkywndrdvrtlvalapelekgeekkreipfe.gvkHnALaDAkhqakavsai 165
                           ++a++a+fD++   +a e+         p+  +++  ++ l  ++  l+k +     +pf+  ++H+AL+D +  a+++ +i
  CTQ28433.1 107 mkesdCSRAIMVAHNATFDHSFTMTAAERaglkrnpFHPFVTFDTAALSGLALGQTVLSKAC-IAAGMPFDgAQAHSALYDTEQTAQLFCEI 197
                 98876334569***********99999999*9986436777778888888888878888886.999999996689**********9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1619.25
//
Query:       CTQ28434.1  [L=115]
Description: monothiol glutaredoxin [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-19   67.8   0.0    1.2e-18   67.1   0.0    1.4  1  Glutaredoxin  Glutaredoxin


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   6.5e-23   1.2e-18       1      60 []      17      81 ..      17      81 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 6.5e-23
                  EEEEES.....TSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin  1 vvlftk.....ptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvfidgkhv 60
                  ++l++k     p C+++++a+++L  +g +f+++d++++++ir+el ++++++t+Pq+++dg++v
    CTQ28434.1 17 ILLYMKgspklPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELV 81
                  689***********************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 942.25
//
Query:       CTQ28435.1  [L=290]
Description: putative exported hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.9e-32  109.1   0.0    2.1e-31  108.0   0.0    1.6  1  NLPC_P60       NlpC/P60 family
    0.00011   22.0   0.0       0.15   11.7   0.0    2.6  2  DUF1175        Protein of unknown function (DUF1175)
     0.0017   18.5   0.1      0.091   12.8   0.0    2.6  2  Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX
     0.0061   16.5   0.0      0.014   15.3   0.0    1.6  1  Amidase_5      Bacteriophage peptidoglycan hydrolase
  ------ inclusion threshold ------
       0.01   16.4   0.1      0.052   14.1   0.1    2.2  1  CHAP           CHAP domain
      0.029   14.5   0.0      0.061   13.4   0.0    1.5  1  Amidase_6      Putative amidase domain
        1.2    9.5   0.0        1.2    9.5   0.0    2.2  2  LRAT           Lecithin retinol acyltransferase
        6.6    6.9   6.6        2.6    8.2   3.9    1.6  2  DAG_kinase_N   Diacylglycerol kinase N-terminus


Domain annotation for each model (and alignments):
>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   9.5e-35   2.1e-31       1     105 []     172     282 ..     172     282 .. 0.97

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 9.5e-35
                 T-BB-TT--BTT.EB-HHHHHHHHHHTT.T----SSHHHHCCCSEE..EEGGG--TTEEEEESG..TGGESEEEEEEETTEEEEEE..TTEEEEEETTS CS
    NLPC_P60   1 gkpYrwGGksps.gfDCsglvryafaka.gielprssgeqeaagkkkeiskselkrGDLvffkt..kkgisHvgiYlgngkmlhas..sekvsvsslse 93 
                 gkpYrwGG+sp+ gfDCsglv+ya+++   i++pr+++e+++ +  + + ++el+ GDLvff+t  ++ ++Hvg+Y+gngk+++++  +  ++++slse
  CTQ28435.1 172 GKPYRWGGTSPRtGFDCSGLVYYAYKDLvKIHIPRTANEMYHLRDARPVDRDELQSGDLVFFRTrgRGAADHVGVYVGNGKFIQSPrtGRDIQITSLSE 270
                 89********999***************************************************99999*****************99999******** PP

                 TTBHSCEEECCE CS
    NLPC_P60  94 kywkkrllgvrr 105
                 +yw ++++g+rr
  CTQ28435.1 271 DYWVRHYVGARR 282
                 ********9987 PP

>> DUF1175  Protein of unknown function (DUF1175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   6.8e-05      0.15      52      78 ..     184     210 ..     140     223 .. 0.84
   2 !    7.9   0.0   0.00098       2.2     139     167 ..     222     250 ..     208     265 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.8e-05
     DUF1175  52 eerDCaglvryavrEalkkhdarwlek 78 
                 +  DC+glv ya+++ +k h +r +++
  CTQ28435.1 184 TGFDCSGLVYYAYKDLVKIHIPRTANE 210
                 567***************998876654 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00098
     DUF1175 139 veqAkpgDllFfdqeddelPyHlmiylge 167
                  ++ ++gDl+Ff+        H+ +y+g+
  CTQ28435.1 222 RDELQSGDLVFFRTRGRGAADHVGVYVGN 250
                 45779*********9999999******99 PP

>> Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.1e-05     0.091      79     128 ..     157     206 ..     129     219 .. 0.78
   2 ?    2.9   0.0     0.047   1.1e+02      20      40 ..     233     261 ..     224     286 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-05
  Peptidase_C92  79 aeqrqkaaeaalrrlgkpYdfgFeleddrlY.CsklVakaykealgikvkt 128
                    ++++++a++  + +lgkpY +g   + +  + Cs lV+ ayk  ++i++++
     CTQ28435.1 157 QKAQSTAMNKLMGQLGKPYRWG-GTSPRTGFdCSGLVYYAYKDLVKIHIPR 206
                    677899999999**********.666555555*********8777776654 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.047
  Peptidase_C92  20 inpatasefkHvgivvgeeg........d 40 
                    +++  ++  +Hvg++vg+++         
     CTQ28435.1 233 FRTRGRGAADHVGVYVGNGKfiqsprtgR 261
                    33434577889999999888554444440 PP

>> Amidase_5  Bacteriophage peptidoglycan hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.4e-06     0.014      28     115 ..     185     265 ..     172     278 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.4e-06
   Amidase_5  28 sydcsssvyfaliaaGalsaGsavntetlfdslikngykeiaennakrGdifiwGvrGasaGagGhtglfidsesiihcnygangitv 115
                  +dcs  vy+a +     +    +n  +    l   + + + +++ + Gd++ + +rG   Ga  h+g+++ ++++i    +   i +
  CTQ28435.1 185 GFDCSGLVYYAYKDLVKIHIPRTANEMYH---L--RDARPVDRDELQSGDLVFFRTRGR--GAADHVGVYVGNGKFIQSPRTGRDIQI 265
                 59*********998777776666664333...3..356788999**********99995..999*************98777766666 PP

>> CHAP  CHAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.3e-05     0.052       9      72 ..     187     249 ..      98     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.3e-05
                 SHHHHHHHHHHHHS.....SSSSSSECTCCHHCEEEEEECSTBS--TTEEEEEETTTTBCT-EEEEEEE CS
        CHAP   9 qCvefaywrlrqag.....gnaddWnnakkakgyknqanvgsstpkvGdivvfdrggeggyGHVaiVek 72 
                 +C  ++y+ ++ +       +a++         +++ + v++ + + Gd+v+f+  g g+ +HV++ ++
  CTQ28435.1 187 DCSGLVYYAYKDLVkihipRTANEM------YHLRDARPVDRDELQSGDLVFFRTRGRGAADHVGVYVG 249
                 7999998887766322222112222......224455567776779*******9988777*****9765 PP

>> Amidase_6  Putative amidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.7e-05     0.061      99     149 ..     221     274 ..     193     288 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.7e-05
   Amidase_6  99 tksklklGdvvqyekngdgtydHtaivtkidsngspee...eilvaqhtkdrln 149
                   ++l+ Gd+v+++++g+g  dH+ + ++  +  ++ +   +i++++ ++d + 
  CTQ28435.1 221 DRDELQSGDLVFFRTRGRGAADHVGVYVGNGKFIQSPRtgrDIQITSLSEDYWV 274
                 3345********************998876554333233669999999999554 PP

>> LRAT  Lecithin retinol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.0      0.66   1.5e+03      91      91 ..     107     107 ..      43     175 .. 0.55
   2 ?    9.5   0.0   0.00052       1.2       3      32 ..     225     257 ..     223     281 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.66
                 H CS
        LRAT  91 n 91 
                 +
  CTQ28435.1 107 A 107
                 2 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00052
                 --TT-EEEEE-....SSSEEEEEEEETTEEEEEE CS
        LRAT   3 lkrGdllevsR....tlyeHhgiyvGdgkVvHlt 32 
                 l+ Gdl+ + R     ++ H g+yvG+gk +   
  CTQ28435.1 225 LQSGDLVFF-RtrgrGAADHVGVYVGNGKFIQSP 257
                 678999885.3356699***********998754 PP

>> DAG_kinase_N  Diacylglycerol kinase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.9    0.0011       2.6      65     140 ..       9      84 ..       5     110 .. 0.50
   2 ?   -1.6   0.1       1.2   2.7e+03     110     110 ..     136     136 ..      88     171 .. 0.45

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0011
  DAG_kinase_N  65 eelcqrLFlsFqkkesqeespesqkkeasksssseenvl.kkseesllkskkkkkekkekkkksekkksseelkaat 140
                     lc+ LF+s + +   ++s  +++++as ++  +++ + +k++ +++k+k+++k++++k+++++  ++++  ++++
    CTQ28435.1   9 ISLCALLFTSISFTPLAQASG-HTHASASPKALPAKSGSeRKKKATSQKTKTTAKTTSKKSSRTRLPTRTTAASQTA 84 
                   579******999999887774.3444443332222222212223333333333333333333333333333333332 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
  DAG_kinase_N 110 l 110
                   +
    CTQ28435.1 136 R 136
                   1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1449  (0.0808188); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2048.95
//
Query:       CTQ28436.1  [L=161]
Description: Regulatory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-18   65.2   0.9    7.1e-18   64.7   0.9    1.3  1  HTH_18    Helix-turn-helix domain
      2e-13   50.1   3.7    2.4e-08   33.9   0.5    2.3  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.9   7.9e-22   7.1e-18       1      80 [.      36     114 ..      36     115 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 7.9e-22
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +a++ g+s +++qr+f  v+g+t + y+ r+++  A   L++ t+ s++ i   lG++ +++F r f+++fg++P++yrr
  CTQ28436.1  36 IAKKSGYSHWYFQRQFAMVTGCTLASYVSRRKMTIATIYLTQ-TQASIQSISQCLGYEGQAAFCRTFHRHFGMSPTRYRR 114
                 6999************************************86.************************************8 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   4.3e-07    0.0039       1      40 [.      23      62 ..      23      64 .. 0.94
   2 !   33.9   0.5   2.6e-12   2.4e-08       6      42 .]      77     114 ..      75     114 .. 0.94

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.3e-07
                HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHH CS
    HTH_AraC  1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqy 40
                ++ ++ + l++  iA   g+S  yF+r+F  +tG+t  +y
  CTQ28436.1 23 IEAHIFDTLSVSAIAKKSGYSHWYFQRQFAMVTGCTLASY 62
                67899999****************************9988 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 2.6e-12
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 +t  +i +i++ lg+  +  F+r+F++ +Gm+P+ yr+
  CTQ28436.1  77 QTQASIQSISQCLGYeGQAAFCRTFHRHFGMSPTRYRR 114
                 78889*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1202.13
//
Query:       CTQ28437.1  [L=193]
Description: superoxide dismutase, Fe [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-40  137.8   1.0    1.2e-39  134.6   0.1    2.5  3  Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal do
    1.9e-35  121.2   0.7    3.1e-35  120.5   0.7    1.4  1  Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin


Domain annotation for each model (and alignments):
>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.19   1.7e+03      78      95 ..      27      44 ..      22      50 .. 0.82
   2 ?    0.3   0.0     0.085   7.6e+02      69      78 ..      70      79 ..      58      83 .. 0.87
   3 !  134.6   0.1   1.3e-43   1.2e-39       1     101 [.      89     189 ..      89     190 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.19
                HHTT-HHHHHHHHGGGBB CS
    Sod_Fe_C 78 dyqnkradYieafwnvvn 95
                +y ++ ++Y++++ n+++
  CTQ28437.1 27 HYGKHHQAYVTNLNNLIK 44
                578888999999999885 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.085
                E-SGGGTHHH CS
    Sod_Fe_C 69 DvwehAYyld 78
                 vw+h +y +
  CTQ28437.1 70 QVWNHTFYWN 79
                79*****975 PP

  == domain 3  score: 134.6 bits;  conditional E-value: 1.3e-43
                 --HHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETTTEEEEEEEETTTBGGGGTTCEEEEEE-SGGGTHHHHTT-HHHHHHHHGGGBBHHHH CS
    Sod_Fe_C   1 psgelaeaieedfgslekfkkefkaaalavfgsGwawLvldkkkkLeivttknqdnplvkeakplLalDvwehAYyldyqnkradYieafwnvvnWkev 99 
                 p+gela+ai ++fgs+ +fk++f++aa+++fg Gw+wLv++ +++L+iv+t+n+ +pl+++akplL++DvwehAYy+dy+n+r++Y+++fw +vnWk+v
  CTQ28437.1  89 PEGELAAAIAKSFGSFADFKAKFTDAAAKNFGAGWTWLVKNADGSLAIVSTSNAGTPLTTDAKPLLTVDVWEHAYYIDYRNARPSYLDHFWALVNWKFV 187
                 89************************************************************************************************9 PP

                 HH CS
    Sod_Fe_C 100 ee 101
                 ++
  CTQ28437.1 188 AA 189
                 86 PP

>> Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   0.7   3.5e-39   3.1e-35       1      82 []       2      82 ..       2      82 .. 0.98

  Alignments for each domain:
  == domain 1  score: 120.5 bits;  conditional E-value: 3.5e-39
                S------SS-TTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHHCHHHHCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTB- CS
    Sod_Fe_N  1 kyeLpeLpYaydaLePhisketlelHhdkHhktYvnnlNkalekleeakkkleelvlkklekalrnnagghvnHslfwknls 82
                ++eLp+LpYa daL+Phis+etle+H++kHh++Yv+nlN+++++++++ k+lee+v +++e++++nna++++nH+++w++l+
  CTQ28437.1  2 SFELPALPYAKDALAPHISAETLEYHYGKHHQAYVTNLNNLIKGTAFEGKSLEEIV-RTSEGGVFNNAAQVWNHTFYWNCLA 82
                59*****************************************************9.999*******************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1426.36
//
Query:       CTQ28438.1  [L=388]
Description: putative transport protein (MFS superfamily) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-32  112.5  42.9      2e-32  112.5  42.9    2.0  2  MFS_1     Major Facilitator Superfamily
    1.5e-11   44.2  41.5    1.8e-11   44.0  41.5    1.0  1  MFS_4     Uncharacterised MFS-type transporter YbfB
    1.1e-05   24.5  12.4    1.1e-05   24.5  12.4    2.6  2  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
        5.1    6.5   8.4        2.2    7.7   4.2    2.3  2  GPI2      Phosphatidylinositol N-acetylglucosaminyltransferas


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5  42.9   4.5e-36     2e-32       1     334 [.      10     322 ..      10     331 .. 0.87
   2 !    7.8   8.6   0.00031       1.4     122     178 ..     326     382 ..     320     388 .] 0.71

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 4.5e-36
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+++af ++++ +  + +lp  +a+   +s  ++g+l+++ya+g +v+++++  l     rr  l++ + +f +g ll ++a+ +++ll++r++++l  
  CTQ28438.1  10 LAIGAFGIGTTEFSPMGLLP-VIAKGVDVSIPVAGMLISAYAIGVMVGAPLMTLLLSHRARRNALIFLMGIFTVGNLLSSIAPDYTTLLLSRIITSLNH 107
                 68999***************.9******************************99999876777************44444656666************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 ga+f +g +++a ++pk ++++a++ + +g  ++ i g +++ +l + +gWr +f++ a+++lla+v   l++  ++ + +  +++++          +
  CTQ28438.1 108 GAFFGLGSVVAASVVPKHKQASAVATMFMGLTIANIGGVPAATWLGETIGWRMSFLATAGLGLLAMV--SLWFSLPKGSAGERPDVKK----------E 194
                 *****************************************************************66..5888888888888888888..........5 PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                  ++ ll+++vl +ll+++l+++++f+++++ +p+ l++  + s+ l ++++l l+++++  +  l+g+++dr       +l ++llll+a++la+  ++
  CTQ28438.1 195 -LSVLLRPQVLSALLTTVLGAGAMFTLYTYISPV-LNTLTHASS-LFITAMLVLIGVGFSLGNYLGGKFADR---SVSGTLKGFLLLLMAIMLAIPLLA 287
                 .99******9977888888888777777777777.699999995.44444666666666666**********...778899999999999999999999 PP

       MFS_1 298 ssavllllvlvliGfglgfvfpsllalasdlappeea 334
                 +s++ ++++++++G + + v+p+l+  ++++a  +ea
  CTQ28438.1 288 QSQAGAAISMIVWGAATFAVVPPLQMRVMRVA--HEA 322
                 9999999********99999999999999999..433 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00031
       MFS_1 122 aigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeeppe 178
                   ++  ++f+lG +lg+++gg+++   lg+  v ++ ai++ la++l +++  + +pe
  CTQ28438.1 326 SSSVNIGAFNLGNALGAAAGGAVIsGGLGYAFVPVMGAIIAGLALLL-VWFSGRAQPE 382
                 56788899***********9999966777777777777777777655.3444444444 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0  41.5     4e-15   1.8e-11       3     362 ..      15     373 ..      11     374 .. 0.86

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 4e-15
       MFS_4   3 valGiGRFsytpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvf 101
                  ++G   Fs   +LP++ + + +s+  ag+l +a ++G +vGa l +  ls++a R  l   +   ++  l ++++   +++ll R+++ +  ++ + +
  CTQ28438.1  15 FGIGTTEFSPMGLLPVIAKGVDVSIPVAGMLISAYAIGVMVGAPLMTLLLSHRARRNALIFLMGIFTVGNLLSSIAPDYTTLLLSRIITSLNHGAFFGL 113
                 3444445555557*********************************9*********99888888888888889999999******************** PP

       MFS_4 102 gsslvlahaaaarrervgallfaGvGlGia.vsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaaeaakaeqkslpllallla 199
                 gs ++ + + ++++++  a +f G  +  a ++g+ ++  l +  ++ ++ la+a l +++++ ++  lp  +  +++ +  +++     +p +  +l+
  CTQ28438.1 114 GSVVAASVVPKHKQASAVATMFMGLTI--AnIGGVPAATWLGETIGWRMSFLATAGLGLLAMVSLWFSLP--KGSAGERPDVKKELSVLLRPQVLSALL 208
                 **********************87655..449999999999999999999********************..667777777777788888999999999 PP

       MFS_4 200 YglaGfGYiit.atFlvaiardg.aggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllsllspsplglivssvllGltflai 296
                   + G+G + t  t+++ + ++   +++l+  ++ +l+G++  +g ++  + a+rs  +++    ll+ a+ ++++ll +s +g ++s ++ G++++a+
  CTQ28438.1 209 TTVLGAGAMFTlYTYISPVLNTLtHASSLFITAMLVLIGVGFSLGNYLGGKFADRSVSGTLKGFLLLLMAIMLAIPLLAQSQAGAAISMIVWGAATFAV 307
                 9999999877626****999998778888899999**********************************************************999988 PP

       MFS_4 297 ta.lvlqlarelappatrrllglmTa.sfgigQilGpllasllaeatgslalallvaaaalvlaaliv 362
                 ++ l ++++r + +++ + l + + + +f +g +lG+++ +++ +   ++a + +++a ++ la+l+v
  CTQ28438.1 308 VPpLQMRVMR-V-AHEAPGLSSSVNIgAFNLGNALGAAAGGAVISGGLGYAFVPVMGAIIAGLALLLV 373
                 8625555555.4.455555555554438***********99999888888888889999888888876 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5  12.4   2.5e-09   1.1e-05      48     190 ..      42     178 ..      29     182 .. 0.88
   2 ?   -6.6   9.1         4   1.8e+04      44      71 ..     235     262 ..     197     376 .. 0.59

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.5e-09
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqla 146
                  g++ s++ +G ++G+ ++ ll     R+++l++   +f +g++l+ +a+    +  l+++R+++ +  G++ +l ++ ++ + pk++    v    ++
  CTQ28438.1  42 AGMLISAYAIGVMVGAPLMTLLLSHRARRNALIFLMGIFTVGNLLSSIAP---DYTTLLLSRIITSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMG 137
                 6899**********************************************...9**********************************98888888888 PP

                 HHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGG CS
    Sugar_tr 147 itfGilvaaifglglnktsnadgwrillglqlvpallllilllf 190
                 +t+  + +    + l +t +   wr+ +  ++ + ll ++ l+f
  CTQ28438.1 138 LTIANIGGVPAATWLGETIG---WRMSFLATAGLGLLAMVSLWF 178
                 88777777666666666666...999999999888776655554 PP

  == domain 2  score: -6.6 bits;  conditional E-value: 4
                 ...HHHHHHHTHHHHHHHHHHHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgd 71 
                 ss+ +++++ +  vG  +G +++g+++d
  CTQ28438.1 235 SSLFITAMLVLIGVGFSLGNYLGGKFAD 262
                 2222333333333333333333333333 PP

>> GPI2  Phosphatidylinositol N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.19   8.3e+02     227     227 ..     102     102 ..      27     154 .. 0.57
   2 ?    7.7   4.2   0.00049       2.2      71     218 ..     164     318 ..     130     377 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.19
        GPI2 227 t 227
                 +
  CTQ28438.1 102 I 102
                 1 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00049
        GPI2  71 svvllssiltvlgwllwelwaskee..........srssraqqrlktiksalliyftllglSPiLksLTkstssDSIwalsfwlllinifffdysiekk 159
                 + ++l+++++v +w+ + + ++ e+           r +  ++ l+t+  a  +++    +SP+L++LT++ s   I a+ ++l+ +   + +y   k 
  CTQ28438.1 164 ATAGLGLLAMVSLWFSLPKGSAGERpdvkkelsvlLRPQVLSALLTTVLGAGAMFTLYTYISPVLNTLTHASS-LFITAM-LVLIGVGFSLGNYLGGKF 260
                 444555555555555554444444345555555544445555558888899999999999*********9854.233333.222333334445554444 PP

        GPI2 160 kskekeeklvaslStnaalmastvLASRLpstlqVFslllfsievfglfPvfrrslrhr 218
                   ++ +++l   l + +a+m ++ L  + ++ +++ s+++     f+++P ++ ++ + 
  CTQ28438.1 261 ADRSVSGTLKGFLLLLMAIMLAIPLLAQ-SQAGAAISMIVWGAATFAVVPPLQMRVMRV 318
                 4333333344444444444333333222.455666667777777777777666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2522.64
//
Query:       CTQ28439.1  [L=341]
Description: DNA-binding transcriptional repressor, hypoxanthine-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.8e-41  139.8   0.0    2.3e-40  138.7   0.0    1.5  2  Peripla_BP_3  Periplasmic binding protein-like domain
    1.3e-34  119.9   0.0    1.6e-34  119.7   0.0    1.0  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    1.1e-19   71.0   0.0    1.6e-19   70.5   0.0    1.1  1  Peripla_BP_4  Periplasmic binding protein domain
    2.8e-19   68.6   0.7    5.8e-19   67.6   0.7    1.6  1  LacI          Bacterial regulatory proteins, lacI family
  ------ inclusion threshold ------
      0.011   16.0   0.0      0.026   14.8   0.0    1.6  1  PucR          Purine catabolism regulatory protein-like famil
      0.023   14.1   0.4      0.062   12.7   0.4    1.8  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
       0.04   14.0   0.1       0.15   12.1   0.0    2.0  2  HTH_3         Helix-turn-helix
      0.065   12.8   0.3        1.1    8.8   0.1    2.4  2  HTH_24        Winged helix-turn-helix DNA-binding
       0.12   12.2   2.6          1    9.2   0.1    2.6  3  HTH_38        Helix-turn-helix domain
       0.13   12.1   0.2        1.1    9.1   0.1    2.2  2  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.4     6e+03      70      86 ..      55      72 ..      13      92 .. 0.54
   2 !  138.7   0.0   1.3e-43   2.3e-40       2     166 .]     171     331 ..     171     331 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.4
                  HHCC.-SEEEEESSCCHH CS
  Peripla_BP_3 70 klaa.lPtAviaasDelA 86
                  k ++ +  +++a+s e+A
    CTQ28439.1 55 KVNHtKSIGLLATSSEAA 72
                  222222235555555444 PP

  == domain 2  score: 138.7 bits;  conditional E-value: 1.3e-43
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEESSCCHHHHHHHHHCCTT- CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPtAviaasDelAlgvlqalreagl 98 
                   ++L+e+Ghr+i++i   g+ +  +   r++gf qa++e+ + ++e ++ + d++ ++++ra+  +  l+ +++PtAv++  D +A+g++ a++e+gl
    CTQ28439.1 171 RYLIERGHREIGVIP--GPLERNTGAGRLAGFMQAMKEAHISVPENWIVQGDFEPESGYRAMQQI--LNQQHRPTAVFCGGDIMAMGAICAADEMGL 263
                   58*************..8888889999**********************************9833..233349************************ PP

                   -TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  99 rvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   rvP+d+s+ig+d+   a+++sP+lTt++qp + lG+aa ++lld++ +++++ +++++ p+lveR+S+
    CTQ28439.1 264 RVPQDISLIGYDNVRNARYFSPALTTIHQPKDSLGEAAFNMLLDRIVNKREESQSIEVHPRLVERRSV 331
                   **********************************************88888888888*********97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   8.7e-38   1.6e-34       2     272 ..      60     322 ..      59     329 .. 0.92

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 8.7e-38
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSH.HHHHHHHHHHHHTT-SEE.EEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTTS CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaagee.edlakaidllkakgidgl.iiatsdtsfdditakaes.gipvialedaidapdgv 95 
                   +++gl+  ++++ +f+++++ ++k  ++ g+ ++l +a ++ e++ ++++ +++k++dgl ++++  ++ + +   +e+  ip++ ++    ++d  
    CTQ28439.1  60 KSIGLLATSSEAAYFAEIIESVEKSCFQKGYTLILGNAWNDlEKQRAYLSMMAQKRVDGLlVMCSEYPD-SVLSMLEEYrHIPMVVMDWGEAKADFT 155
                   78*********************************98865515666*************8256788888.8999999999*******9988888788 PP

                   -EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-..TT-SEEE-SSHH CS
  Peripla_BP_1  96 PcvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh..Peidaivainde 190
                   + vi +++q g+ ++++Li++gh++ i +++gp    t + r  Gf++a++ea   v + ++ +g+ + e ++ a++++l+++  P+  a+ ++ d 
    CTQ28439.1 156 DAVIDNAFQGGYIAGRYLIERGHRE-IGVIPGPLERNTGAGRLAGFMQAMKEAHISVPENWIVQGDFEPESGYRAMQQILNQQhrPT--AVFCGGDI 249
                   988888*******************.***************************99*************************9888***..******** PP

                   HHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEEE--EEEEE CS
  Peripla_BP_1 191 aalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkerehprvllip 272
                   +a+Ga+ a+   G l+ ++++     s+ +yd+     +   + + l++i  p++ lG +a++m+l+ i ++re+++++ + 
    CTQ28439.1 250 MAMGAICAADEMG-LRVPQDI-----SLIGYDNV---RNARYFSPALTTIHQPKDSLGEAAFNMLLDRIVNKREESQSIEVH 322
                   *************.*******.....********...7778899*************************9999999988765 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   8.9e-23   1.6e-19       1     253 [.      62     308 ..      62     313 .. 0.88

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 8.9e-23
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSH.HHHHHHHHHHHHTT-EEEEESTTGCTTT-C CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvds.talapalkkakaaGIpVvafdsddapsger 96 
                   ig++ ++++ ++f ++ e +e+ + ++g++ ++ g+a nd ++Q a ++ + +k vdg++v   +  + + ++l++ +  +Ip+v++d    ++++ 
    CTQ28439.1  62 IGLLATSSEAAYFAEIIESVEKSCFQKGYTLIL-GNAWNDLEKQRAYLSMMAQKRVDGLLVMCSEYpDSVLSMLEEYR--HIPMVVMDWG-EAKADF 154
                   67777778888******************9999.9**********************99877666637788*****87..9*********.999999 PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHH.TTTECEEEESS CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaeva.ganwdaekaqqaleallt.anpldgilaan 191
                   +  v  + ++ G+++++yl e    +   + ++ G +  +  + r++gf++++ke   i + + ++ +++ ++e +++a++++l  ++   ++++ +
    CTQ28439.1 155 TDAVIDNAFQGGYIAGRYLIERGHRE---IGVIPGPLERNTGAGRLAGFMQAMKE-AHISVPENWIvQGDFEPESGYRAMQQILNqQHRPTAVFCGG 247
                   99*********************965...9999**********************.88888885555889***************766579****** PP

                   CCHHHCHHHHHHHTTT.TSTEE.EEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHH CS
  Peripla_BP_4 192 dgmaegalealeaagl.agkvv.vtgqDatpealeaikdGtidatvaqdpyelgyaavelaval 253
                   d ma+ga+ a  + gl  ++++ ++g+D+   a+ +  + t   t+ q+   lg+aa+ ++++ 
    CTQ28439.1 248 DIMAMGAICAADEMGLrVPQDIsLIGYDNVRNARYFSPALT---TIHQPKDSLGEAAFNMLLDR 308
                   ****************8444444999999888888877777...99999999999999999865 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.7   3.2e-22   5.8e-19       1      46 []       3      48 ..       3      48 .. 0.99

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 3.2e-22
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                tikDVA++A+VS++TVS+v+n+++ V+eetr+ V aa++el+Y P+
  CTQ28439.1  3 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPS 48
                9*******************************************96 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.4e-05     0.026      46     113 ..      92     158 ..      64     161 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.4e-05
        PucR  46 lttglalkddpealaelvrelaeagvaaLviklgreipeelieaadel.glPlielpeevpfveiieev 113
                 l+ g a++ d e++++++  +a++ v +L +    e p++++++ +e+ ++P++++++    ++ + +v
  CTQ28439.1  92 LILGNAWN-DLEKQRAYLSMMAQKRVDGLLVMC-SEYPDSVLSMLEEYrHIPMVVMDWGEAKADFTDAV 158
                 33467786.999*********************.69********998538******9976666666666 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   3.5e-05     0.062      27      45 ..       1      19 [.       1      24 [. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.5e-05
  HTH_Tnp_ISL3 27 srsvkavArqlgvSwtTVw 45
                  ++++k+vA++ +vS+tTV 
    CTQ28439.1  1 MATIKDVAKRANVSTTTVS 19
                  68****************7 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.4e-05      0.15      11      32 ..       3      24 ..       3      27 .. 0.91
   2 ?   -4.0   0.1       8.9   1.6e+04      29      36 ..     174     181 ..     174     182 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.4e-05
                HHHHHHHHHTSSHHHHHHHHTT CS
       HTH_3 11 sqeeLAeklGvsrstisriEnG 32
                +++++A++++vs +t+s+ +n 
  CTQ28439.1  3 TIKDVAKRANVSTTTVSHVINK 24
                789***************9996 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 8.9
                 HHTTSSCS CS
       HTH_3  29 iEnGernP 36 
                 iE+G+r++
  CTQ28439.1 174 IERGHREI 181
                 8***9986 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00063       1.1      19      40 ..       3      24 ..       2      24 .. 0.91
   2 ?    1.6   0.0      0.11     2e+02      25      39 ..      41      55 ..      32      56 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00063
      HTH_24 19 sqreLAerlglSpstvnrrlkr 40
                +++++A+r ++S +tv+  +++
  CTQ28439.1  3 TIKDVAKRANVSTTTVSHVINK 24
                89***************98876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.11
      HTH_24 25 erlglSpstvnrrlk 39
                ++l+ Sps+v r lk
  CTQ28439.1 41 KELHYSPSAVARSLK 55
                578888888888776 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00058         1      22      41 ..       3      22 ..       2      24 .. 0.91
   2 ?    2.5   0.0      0.07   1.3e+02      21      33 ..      45      57 ..      38      59 .. 0.58
   3 ?   -3.7   0.2       5.9   1.1e+04      10      19 ..     171     180 ..     171     180 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00058
      HTH_38 22 slreIArrLgrspsTIsREl 41
                +++++A+r ++s++T+s  +
  CTQ28439.1  3 TIKDVAKRANVSTTTVSHVI 22
                799**************987 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.07
      HTH_38 21 lslreIArrLgrs 33
                +s +++Ar L+++
  CTQ28439.1 45 YSPSAVARSLKVN 57
                4555566666555 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 5.9
      HTH_38  10 ReeIerllae 19 
                 R+ Ier++ e
  CTQ28439.1 171 RYLIERGHRE 180
                 7889999865 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00063       1.1      19      40 ..       3      24 ..       2      35 .. 0.90
   2 ?    0.2   0.0       0.4   7.1e+02      16      29 ..      42      56 ..      34      59 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00063
      HTH_23 19 svreIAreLgvsrrTvyrwlkr 40
                +++++A++ +vs  Tv++++++
  CTQ28439.1  3 TIKDVAKRANVSTTTVSHVINK 24
                89****************9987 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.4
      HTH_23 16 e.GlsvreIAreLgv 29
                e  +s++++Ar L v
  CTQ28439.1 42 ElHYSPSAVARSLKV 56
                133555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2648.93
//
Query:       CTQ28440.1  [L=334]
Description: putative DNA-binding transcriptional regulator; LysR-type [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-28   99.9   0.1    2.1e-28   99.1   0.1    1.4  1  LysR_substrate  LysR substrate binding domain
    2.7e-20   72.0   0.1    5.5e-20   71.1   0.1    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.033   14.1   0.1       0.19   11.7   0.0    2.0  2  MarR_2          MarR family
       0.04   13.7   0.0       0.08   12.8   0.0    1.4  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.1   4.8e-32   2.1e-28       2     206 ..      88     290 ..      87     292 .. 0.95

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 4.8e-32
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGG.S CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLar.g 93 
                     +g rg+L+i++ + + + ++ +++ +f +++P+vel + ++  + + d+la+g++ lai a +      ++ +r  +   + +v++ dhpLa+  
      CTQ28440.1  88 NGWRGQLSIAVDDIVKPARMRQMIVDFYRHFPDVELIVFQEVFNGVWDALADGRVELAIGATRSipVGGRYAFRDMGMLSWDCVVASDHPLAKmD 182
                     689*************************************************************99****************************9 PP

                     SSECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEE CS
  LysR_substrate  94 epvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvy 187
                      p+s + L+++p +++e+ s+       +     l+ + ++ v ++e+ + + +aGl ++++p++++r+++++g+  al l++ p+p ++ +l +
      CTQ28440.1 183 GPLSDDILRNWPSLVREDTSRSLPKRTTW----LLDNQKRVVVPDWESSATCLSAGLCVGMVPSHFARPWIDRGEWTALALEN-PFPdAACCLTW 272
                     9**************99999955555555....488899999*****************************************.7777******* PP

                     ETTCCCHHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflre 206
                     ++++ +spa+ +++d+l +
      CTQ28440.1 273 QQND-ASPALNWMLDYLGD 290
                     ****.**********9976 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.1   1.2e-23   5.5e-20       4      59 ..       7      62 ..       5      63 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 1.2e-23
                HHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  4 lrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l++ +ava++gsf++AA+eL+  ++avs  +++LEe+l vpLfeR +r ++LT+aG
  CTQ28440.1  7 LEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTPAG 62
                8999*****************************************8889******9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.2e-05      0.19      12      47 ..      11      42 ..       7      43 .. 0.86
   2 ?   -0.9   0.0      0.35   1.5e+03      29      43 ..      74      88 ..      72      90 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
                HHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 12 aaLgrrpgrdltvgelarrlglsksavsrilkrLva 47
                 a++r++    + ++ a++l+  +savs++++ L++
  CTQ28440.1 11 DAVARNG----SFSAAAQELHRVPSAVSYTVRQLEE 42
                5667776....899********************97 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.35
                HHHTSSHHHHHHHHH CS
      MarR_2 29 rrlglsksavsrilk 43
                ++++++++  ++i +
  CTQ28440.1 74 KKMQITRQQCQQIAN 88
                5799********987 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.8e-05      0.08       8      48 ..      13      52 ..       7      55 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
                HHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHH CS
      HTH_30  8 ylenggnisatAkaLhvHrnTlryRLrrieellgldlddpd 48
                    +g+ sa+A++Lh  +  ++y +r++ee l ++l + +
  CTQ28440.1 13 VA-RNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERR 52
                44.46***************************999886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2807.45
//
Query:       CTQ28441.1  [L=393]
Description: putative transporter; MFS superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-42  145.5  43.6    1.8e-42  145.5  43.6    2.0  2  MFS_1     Major Facilitator Superfamily
    2.1e-11   43.4   2.6    2.1e-11   43.4   2.6    2.2  2  Sugar_tr  Sugar (and other) transporter
    4.3e-06   25.5   7.6    4.3e-06   25.5   7.6    2.7  2  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.5  43.6   3.1e-46   1.8e-42       4     344 ..      15     340 ..      12     344 .. 0.87
   2 ?   -1.2   4.2      0.12   7.4e+02      65      99 ..     346     378 ..     342     384 .. 0.60

  Alignments for each domain:
  == domain 1  score: 145.5 bits;  conditional E-value: 3.1e-46
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagal 102
                 + +l +la ++++pa+  a+++dl+ s+++i+  l+l+ +g+a+++l++G+lsdr+Gr++vll gl++fa+g+l +l++++ +l+l+lr+lq++g +a+
  CTQ28441.1  15 LSVLGFLATDMYLPAFA-AMQQDLNTSAASISASLSLFLAGFALGQLFWGPLSDRYGRKPVLLSGLAIFAAGCLGMLWVHNATLMLALRFLQAIGVCAA 112
                 578899***********.******************************************************88888989999**************** PP

       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawk 201
                 + + +a++ad++p ++ +r ++ ++  ++l+++l+pllg++l+ ++ W+a+f  l +++ll+++     l+ ++ +++ + ++++         ++ + 
  CTQ28441.1 113 AVTWQAMVADYYPAQRTNRIFATIMPLVGLSPALAPLLGSWLLVHFEWQAIFATLFAITLLLML---PALRLKAAAKSVVVTQQK---------IT-FL 198
                 **************************************************************88...888888888888888888.........44.55 PP

       MFS_1 202 allkdpvlw..illialllfffgfsglltllplylqevlglsglllaglllallalvgail.allagrlsdrlgrrrrlllallllllaalglallavt 297
                 all+++     +l++a++++   f++ lt +p++    +g++   +a +l+ +++ +++ + +  + +l+++++ + +l + l+++++++++  l+++ 
  CTQ28441.1 199 ALLRSREYSgnVLIYAACSA--SFFAWLTGSPFI-LHEMGYG--PTAIGLSYIPQTIAFLVgGYGCRALLQKWSGQQMLPWLLVIFAISVAATWLVGLQ 292
                 55555544233488888888..899999*****7.9******..3444445555555544438888899999*************************** PP

       MFS_1 298 ssavllll..vlvliGfglgfvfpsllalasdlappeeagtasglfnta 344
                 ++a+l++l  ++ ++ +  g ++p++ a+a + +p +++g+a++l nt+
  CTQ28441.1 293 THASLVALmiPFCMMAVVNGGIYPIVVAQALKPFP-QATGRAAALQNTL 340
                 66666665434444888*****************8.*********9997 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.12
       MFS_1  65 lllglllfalglllllfasslwlllvlrvlqGlga 99 
                 +l++ll++al  + +l+ ++  ++lv+  l+G+g+
  CTQ28441.1 346 FLTSLLVSALI-ATPLL-TTTSVMLVSIGLAGIGY 378
                 45555555555.33333.55557888888888875 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   2.6   3.4e-15   2.1e-11      39     130 ..      35     123 ..      15     176 .. 0.86
   2 ?   -3.2   4.6      0.46   2.7e+03     325     383 ..     277     330 ..     185     381 .. 0.68

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 3.4e-15
                 HHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTT CS
    Sugar_tr  39 sskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEi 130
                 ++ ++s+  +++++s+fl+G ++G+lf g+l+dr+GRk++ll + ++f +g + + + +   +  ++++ R+l  igv +a v+    ++ +
  CTQ28441.1  35 QDLNTSAASISASLSLFLAGFALGQLFWGPLSDRYGRKPVLLSGLAIFAAGCLGMLWVH---NATLMLALRFLQAIGVCAAAVTWQAMVADY 123
                 33344556789************************************************...899*************99999877666655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.46
                 HHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTT CS
    Sugar_tr 325 agmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsv 383
                 ++ ai  +      l++ ++   as va++  + ++a+ + g+ p++   +   fpq++
  CTQ28441.1 277 VIFAISVAAT---WLVGLQT--HASLVALMIPFCMMAVVNGGIYPIVVAQALKPFPQAT 330
                 2222222222...3334444..3678888888888888888888888777777777665 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   7.6   7.2e-10   4.3e-06     228     342 ..      11     123 ..       6     151 .. 0.85
   2 ?  -11.0  16.7         3   1.8e+04     269     320 ..     249     306 ..     132     376 .. 0.62

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 7.2e-10
       MFS_2 228 illllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviag 325
                 +l+ l +l +la+ ++  +++  ++  l+ +++ +s++l ++ ++ +lg ++w pl  r+g+k + l+g+++ +++ +++l++   n +l+l+l ++  
  CTQ28441.1  11 WLAGLSVLGFLATDMYLPAFAA-MQQDLNtSAASISASLSLFLAGFALGQLFWGPLSDRYGRKPVLLSGLAIFAAGCLGMLWV--HNATLMLALRFLQA 106
                 5555555555555555555553.555566699999999999999999************************************..9999999999**** PP

       MFS_2 326 fgvgvaallpwsmladv 342
                 +gv++aa++  +m+ad 
  CTQ28441.1 107 IGVCAAAVTWQAMVADY 123
                 **************996 PP

  == domain 2  score: -11.0 bits;  conditional E-value: 3
       MFS_2 269 tisallgiplwqplakrlgkkntyllgalltivllvlvlll......qpsnlllflvl 320
                 ti+ l+g     +l ++++ +++  + +++ ++  + ++l+      +   l++ + +
  CTQ28441.1 249 TIAFLVGGYGCRALLQKWSGQQMLPWLLVIFAISVAATWLVglqthaSLVALMIPFCM 306
                 5555555555555555555555555555555555555555544321111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2984.39
//
Query:       CTQ28442.1  [L=382]
Description: cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.5e-102  340.3   0.3     1e-101  339.8   0.3    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
      3e-16   59.9   0.0      6e-16   58.9   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    1.4e-15   57.5   0.0    2.2e-15   56.9   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.7e-15   57.5   0.0    3.1e-15   56.6   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    5.3e-10   39.3   0.0    1.1e-09   38.2   0.0    1.6  1  Methyltransf_31  Methyltransferase domain
    4.6e-09   36.9   0.0    9.7e-09   35.9   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
    3.4e-06   26.7   0.0    5.8e-06   26.0   0.0    1.3  1  MTS              Methyltransferase small domain
    4.8e-05   23.2   0.0      7e-05   22.7   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    9.2e-05   22.1   0.1    0.00019   21.1   0.1    1.4  1  MetW             Methionine biosynthesis protein MetW
    0.00043   20.4   0.0    0.00088   19.4   0.0    1.5  1  FtsJ             FtsJ-like methyltransferase
    0.00091   19.2   0.0     0.0014   18.6   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
  ------ inclusion threshold ------
      0.044   13.4   0.0        1.4    8.5   0.0    2.2  1  TPMT             Thiopurine S-methyltransferase (TPMT)
      0.049   13.3   0.0      0.076   12.7   0.0    1.2  1  GCD14            tRNA methyltransferase complex GCD14 subunit
      0.072   12.6   0.0       0.11   12.0   0.0    1.3  1  Methyltransf_PK  AdoMet dependent proline di-methyltransferas
      0.091   11.8   0.0       0.16   11.0   0.0    1.4  1  RrnaAD           Ribosomal RNA adenine dimethylase


Domain annotation for each model (and alignments):
>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.8   0.3  8.6e-105    1e-101       2     273 .]     108     368 ..     107     368 .. 0.98

  Alignments for each domain:
  == domain 1  score: 339.8 bits;  conditional E-value: 8.6e-105
                 XSXXXHHHHHHHHTS-HHHHCTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHH CS
        CMAS   2 kkkkevenikahYDlsndffalfldptmtYsCAyferddmtLeeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqakl 100
                 +kk+++   k+hYDl+nd+f+ +ldp m+YsC y+++++  Le+Aq+aKldli++klel+pGm++LdiGcGWG+l+ +++++y+v+vvg+T+S+eq+k+
  CTQ28442.1 108 SKKRAWIVGKEHYDLGNDLFSRMLDPYMQYSCGYWKEAQS-LEAAQQAKLDLICRKLELEPGMRVLDIGCGWGGLAEYMARNYQVSVVGVTISAEQQKM 205
                 78999999****************************9987.********************************************************** PP

                 HHHHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHH CS
        CMAS 101 akkrvdeldlerkvevklldyedldekvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhkkelaerglklkfidkeiFPgGelpsie 199
                 a++r+++ld    ve++l+dy+dl++ +dr+vsvg+fehvg +ny+t+f++++++lk++G++llhti s+ +++++    +  +idk+iFP+G+lps++
  CTQ28442.1 206 AQARCADLD----VEIRLQDYRDLHDSFDRIVSVGMFEHVGPKNYATYFEVADRNLKPNGRFLLHTIGSKVTDHNV----D-PWIDKYIFPNGCLPSVR 295
                 ********9....9*******************************************************9999888....3.8**************** PP

                 HHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHHHHHSHHHHHHHHHHHHHHHHHHHHTTSCEEEEE CS
        CMAS 200 eieeeiseagftvvdveslrahYakTLkaWaealqenkdeaialvseevarmyelYLagcaeaFrkgyidvaql 273
                 +i+e +se +f ++d+++++a+Y +TL+aW+e++ + + e+++++se+++rm+++YL++ca aFr++ i+++q+
  CTQ28442.1 296 HIAE-ASEKHFVMEDWHNFGADYDTTLMAWYERFLASWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQV 368
                 **99.8899***************************************************************96 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0     5e-19     6e-16       1      97 []     171     261 ..     171     261 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 5e-19
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLk 94 
                      vLd+GcG G l++++a+++ + +v+gv is+e+ + a++r+  ++l+ve++ +d +dl+   +sfD +vs+g+++h+ +++++++++ + r Lk
       CTQ28442.1 171 VLDIGCGWGGLAEYMARNY-QVSVVGVTISAEQQKMAQARC--ADLDVEIRLQDYRDLH---DSFDRIVSVGMFEHVGPKNYATYFEVADRNLK 258
                      9*****************9.7********************..5689***********7...69*******99********************* PP

                      EEE CS
  Methyltransf_25  95 pgG 97 
                      p+G
       CTQ28442.1 259 PNG 261
                      *99 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   1.9e-18   2.2e-15      17     143 ..     160     297 ..     141     319 .. 0.73

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 1.9e-18
  Methyltransf_23  17 lpk..lraggrvLdiGcGtGillevlren.gfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqgkfdlIvlrevlehvp..dppellrqi 105
                        k  l++g+rvLdiGcG G l+e++++n ++sv+gv +s e++++a+ +    ++  + q+ ++  ++fd Iv+  ++ehv   +++ ++  +
       CTQ28442.1 160 CRKleLEPGMRVLDIGCGWGGLAEYMARNyQVSVVGVTISAEQQKMAQARCADLDVEIRLQDYRDLHDSFDRIVSVGMFEHVGpkNYATYFEVA 253
                      22233899******************666388**********99999544444444556667888999**************9778******** PP

  Methyltransf_23 106 atllkpgGylllseplaslkedrllldw..lylvpag.....rhi 143
                       ++lkp+G++ll++++++   d+ ++ w  +y++p+g     rhi
       CTQ28442.1 254 DRNLKPNGRFLLHTIGSKV-TDHNVDPWidKYIFPNGclpsvRHI 297
                      **************99764.4444444445677766433333444 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   2.6e-18   3.1e-15       1      95 [.     172     264 ..     172     265 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 2.6e-18
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvLkpg 91 
                      Ld+GcG G lae++a+++  +vvgv +s+e+ k+a+++  + +  ve++ +d ++  + d sfD +vs  +++hv  ++ + +++ + R Lkp+
       CTQ28442.1 172 LDIGCGWGGLAEYMARNYqVSVVGVTISAEQQKMAQARCADLD--VEIRLQDYRD--LHD-SFDRIVSVGMFEHVgpKNYATYFEVADRNLKPN 260
                      8**************9999*********************999..9999999998..677.********************************* PP

                      EEEE CS
  Methyltransf_11  92 Gllv 95 
                      G+++
       CTQ28442.1 261 GRFL 264
                      *997 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   9.5e-13   1.1e-09       2     120 ..     166     270 ..     165     319 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 9.5e-13
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnal..adpdki 93 
                      + g+rvlD+GCG G l+  +a+  + +  vvG+ is+e  + A++++++l    ve + +d  +l      ++fD i+s + + ++  ++ + +
       CTQ28442.1 166 EPGMRVLDIGCGWGGLAEYMAR--NYQVSVVGVTISAEQQKMAQARCADLD---VEIRLQDYRDLH-----DSFDRIVSVGMFEHVgpKNYATY 249
                      579******************4..45899****************988665...57********99.....89**********55521566778 PP

  Methyltransf_31  94 leeiervlkpggilliedprllaelpa 120
                      +e + r+lkp+g++l+ ++        
       CTQ28442.1 250 FEVADRNLKPNGRFLLHTIG------S 270
                      8999***********99987......3 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   8.1e-12   9.7e-09       1      99 []     172     263 ..     172     263 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 8.1e-12
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnirkl 92 
                      L+iGcG G l+++++++  +++++gv is+++ + a+++ a+ +     +++l++  +l +    sfD +v+ + ++h+  k+ + +++ + + 
       CTQ28442.1 172 LDIGCGWGGLAEYMARN-YQVSVVGVTISAEQQKMAQARCADLDV----EIRLQDYRDLHD----SFDRIVSVGMFEHVgpKNYATYFEVADRN 256
                      8*************999.9**************888888888774....666666665433....**************999999********* PP

  Methyltransf_12  93 LkpgGrl 99 
                      Lkp+Gr+
       CTQ28442.1 257 LKPNGRF 263
                      *****96 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   4.8e-09   5.8e-06      22     136 ..     158     264 ..     153     273 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 4.8e-09
                 HHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHHH CS
         MTS  22 lLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsNPPfhagkatelavaee 120
                 l+ ++l+ e   +vlD+GcG+G l+  +a+++ +++v+ v ++a+  ++a++ +++  l+ve++ +d   +++ ++fd ivs   f +      +   +
  CTQ28442.1 158 LICRKLELEPGMRVLDIGCGWGGLAEYMARNY-QVSVVGVTISAEQQKMAQARCAD--LDVEIRLQDYR-DLH-DSFDRIVSVGMFEHVGP---KNYAT 248
                 5566778888899**************99965.45788888888888887777665..55778888865.566.6*******999865554...46667 PP

                 HHHHHHHHEEEEEEEE CS
         MTS 121 liaeAkeaLkegGeLl 136
                  ++ A + Lk++G++l
  CTQ28442.1 249 YFEVADRNLKPNGRFL 264
                 8999999999999986 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   5.9e-08     7e-05      64     123 ..     158     215 ..     134     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 5.9e-08
                 HHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTT CS
        PCMT  64 lalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldl 123
                 l++  lel++g+rvL++G+G G l+  +ar  + +  vv++  ++e ++ a+++   ld+
  CTQ28442.1 158 LICRKLELEPGMRVLDIGCGWGGLAEYMARNYQVS--VVGVTISAEQQKMAQARCADLDV 215
                 5677899**********************987655..58888777777777777666655 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   1.6e-07   0.00019      11      80 ..     165     233 ..     155     242 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.6e-07
        MetW  11 ikpgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdldkdlenfed..ksfdyvv 80 
                 ++pg rvld+GcG G l e+++ + qv+  G+ +++e  + + a+     + d++  l+ ++d  +sfd +v
  CTQ28442.1 165 LEPGMRVLDIGCGWGGLAEYMARNYQVSVVGVTISAEQQKMAQARC---ADLDVEIRLQDYRDlhDSFDRIV 233
                 6899******************************999988888875...45688888888887556788766 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   7.3e-07   0.00088       8      70 ..     155     215 ..     150     277 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.3e-07
                 HHHHHHHHHT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEES.SSSHHHTTEEEECS-C CS
        FtsJ   8 KLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDl.qpmaplpgvttiqgdi 70 
                 KL  i  k + ++pg++v+D+g++ Gg +++++++  +   vv+v++  + +++ + ++   d+
  CTQ28442.1 155 KLDLICRKLE-LEPGMRVLDIGCGWGGLAEYMARNY-Q-VSVVGVTIsAEQQKMAQARCADLDV 215
                 7888888888.99**********************6.4.79******54557777777775555 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.2e-06    0.0014      24      75 ..     166     214 ..     150     234 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.2e-06
  Methyltransf_32  24 sgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklg 75 
                      ++ ++v+D+G+G g L+  +a    +y+++vvg+ +++e  + a++r + l 
       CTQ28442.1 166 EPGMRVLDIGCGWGGLAEYMAR---NYQVSVVGVTISAEQQKMAQARCADLD 214
                      56789*****************...9****************9999988887 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0012       1.4      26      70 ..     156     201 ..     146     312 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0012
                 HHHHHHT.T-S--EEEEEET-TT-HHHHHH-BT.TEEEEEE-S-HH CS
        TPMT  26 lkkfldalkakaglrvlvPlCGkaldlvwlAeq.grevvGvelsel 70 
                 l   + +l++++g rvl  +CG +  +  +A + + +vvGv +s  
  CTQ28442.1 156 LDLICRKLELEPGMRVLDIGCGWGGLAEYMARNyQVSVVGVTISAE 201
                 5666788999999999999999999999999652678999999854 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.3e-05     0.076      29      81 ..     156     208 ..     151     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.3e-05
       GCD14  29 isliimkLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraeka 81 
                 + li  kLel+pG +v++ G G g l++++ar  +      t+   +q++ +a
  CTQ28442.1 156 LDLICRKLELEPGMRVLDIGCGWGGLAEYMARNYQVSVVGVTISAEQQKMAQA 208
                 6799****************************865544445555555555555 PP

>> Methyltransf_PK  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.1e-05      0.11      57     162 ..     169     268 ..     150     307 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.1e-05
  Methyltransf_PK  57 kvaldcGaGiGrvtknlLlkllskvDlvepvekflekakeelaeekkkvgkvyvvglqeftPeegrYdliWiqWcvghLtDedlvaflkrckka 150
                       ++ld+G+G G +++ +  ++      v +v   +++ ++++a+  + +    ++ lq++   ++++d i    +  h+  ++++ +++ + + 
       CTQ28442.1 169 MRVLDIGCGWGGLAEYMARNYQ-----VSVVGVTISAEQQKMAQ-ARCADLDVEIRLQDYRDLHDSFDRIVSVGMFEHVGPKNYATYFEVADRN 256
                      5789999999999888777664.....44556668899999999.33444457899************************************** PP

  Methyltransf_PK 151 lkpnGlivvken 162
                      lkpnG + +   
       CTQ28442.1 257 LKPNGRFLLHTI 268
                      *****9987654 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00013      0.16      19      50 ..     156     187 ..     150     225 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                 HHHHHHHH-GGTTSEEEEES-TTTCCHHHHHC CS
      RrnaAD  19 ineIldklnleekltvleigpGkGilTeeLak 50 
                 ++ I +kl+le+ + vl+ig G G l e +a 
  CTQ28442.1 156 LDLICRKLELEPGMRVLDIGCGWGGLAEYMAR 187
                 67899*******************99998843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2714.08
//
Query:       CTQ28443.1  [L=211]
Description: riboflavin synthase, alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-47  158.1   2.4    4.8e-23   81.0   0.1    2.2  2  Lum_binding  Lumazine binding domain


Domain annotation for each model (and alignments):
>> Lum_binding  Lumazine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.4   4.4e-26   7.8e-22       1      87 []       3      87 ..       3      87 .. 0.95
   2 !   81.0   0.1   2.7e-27   4.8e-23       1      87 []     100     185 ..     100     185 .. 0.92

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 4.4e-26
                 -S--SEEEEEEEEE.ECGCTTEETEESGGGGG..TTT-EEEETTEEEEEEEEEE.SSEEEEEEEHHHHHHSSGGG--TTSEEEEEEE CS
  Lum_binding  1 tGiVeevgtvesiekeekledltielpelakylvekGdsiavnGvcLTVvteeveeeeftvdvipeTlerttlgelkvgdkVNlEra 87
                 tGiV+++++v+si+++ + ++  +elp+ +   +e G+s+a nG+cLTV+  e++  ++++d+++eTl+ t+lg+++vgd+VN+Era
   CTQ28443.1  3 TGIVQGTAKVVSIDDKPNFRTHVVELPAHMLEGLETGASVANNGCCLTVT--EINGARISFDLMKETLRITNLGDIQVGDEVNVERA 87
                 8************88888999999999999999****************9..899******************************96 PP

  == domain 2  score: 81.0 bits;  conditional E-value: 2.7e-27
                  -S--SEEEEEEEEE.ECGCTTEETEES..GGGGG..TTT-EEEETTEEEEEEEEEE.SSEEEEEEEHHHHHHSSGGG--TTSEEEEEEE CS
  Lum_binding   1 tGiVeevgtvesiekeekledltielp..elakylvekGdsiavnGvcLTVvteeveeeeftvdvipeTlerttlgelkvgdkVNlEra 87 
                  +G++ +++++++i ++e+ +++ ++++  +l+ky++ kG +i ++G++LTV   ev++++f v++ipeTl+rttlg++k gd+VN+E++
   CTQ28443.1 100 SGHIMTTAEIVKILTSENNRQIWFKVQdpTLMKYILYKG-FIGIDGISLTVG--EVTATRFCVHLIPETLQRTTLGAKKLGDRVNIEID 185
                  6************5556677777777777**********.***********8..89*******************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1627.21
//
Query:       CTQ28444.1  [L=457]
Description: multidrug efflux system transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-74  248.3  27.8    2.1e-40  138.0   6.6    3.0  4  MatE             MatE
    3.8e-09   36.7   6.1    3.8e-09   36.7   6.1    4.9  5  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai
     0.0092   16.0   3.1        1.1    9.3   0.2    2.9  2  DUF5389          Family of unknown function (DUF5389)


Domain annotation for each model (and alignments):
>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   6.6   3.5e-44   2.1e-40       1     161 []      17     177 ..      17     177 .. 0.98
   2 ?   -2.3   0.4      0.51     3e+03      19      47 ..     179     207 ..     178     210 .. 0.72
   3 !  124.2  13.2   6.3e-40   3.7e-36       1     161 []     244     405 ..     244     405 .. 0.99
   4 ?   -2.4   0.3      0.56   3.3e+03      76      94 ..     421     439 ..     419     445 .. 0.59

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 3.5e-44
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqils 99 
                 P++l++++++ ++++dt+++g+++++++Aav+i++si+ + ++f+ gl  alt++v+q  G+++++r++ ++rqg++l+ ++s++i+++ l+++ +i+s
  CTQ28444.1  17 PVILAQVAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVVAQLNGSGRRERIAPQVRQGFWLAGFVSVLIMVV-LWNAGYIIS 114
                 9****************************************************************************************.999999999 PP

        MatE 100 lftqdee.vlelakrylrililgipalalqlvlsgilrgagktkvplyislislllniplnyl 161
                  +++ +  ++e+a  ylr+l++g+p++++++v+++ + g +ktk+++++ +i+ll+nip+ny+
  CTQ28444.1 115 SMHNIDPlLAEKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYI 177
                 9999877799****************************************************7 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.51
        MatE  19 lvgrlgskalAavsialsilsllfvfllg 47 
                 + g++g  +l++v+ +  ++s++ v + +
  CTQ28444.1 179 IYGHFGMPELGGVGCGVATASVYWVMFAS 207
                 56888888889998888888877665544 PP

  == domain 3  score: 124.2 bits;  conditional E-value: 6.3e-40
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqils 99 
                 Pial+ ++e++l++++ llv+ lg  ++A+++ial+++sl+fv++l+l++a+t++vg +lG++++ +a++++r+g+ ++++l++++a++++l ++qi+ 
  CTQ28444.1 244 PIALALFFEVTLFAVVALLVSPLGIIDVAGHQIALNFSSLMFVLPLSLAAAVTIRVGFRLGQGSTIDAQVSARTGVGVGVCLAVFTAIFTVLMRKQIAL 342
                 9************************************************************************************************** PP

        MatE 100 lftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislisl.llniplnyl 161
                 l+++++ev+ la++++++++++++ +++q++ sgilrg+++t+ +++i++ ++ +l++p +yl
  CTQ28444.1 343 LYNDNPEVVTLASHLMLLAAIYQISDSIQVIGSGILRGYKDTRSIFFITFTAYwVLGLPSGYL 405
                 ***********************************************************9996 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.56
        MatE  76 lilllllsliiallvllfs 94 
                 ++ +++++l  a+++++++
  CTQ28444.1 421 FWCGFIIGLTSAAIMMMLR 439
                 5666666666666666555 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   4.0       2.2   1.3e+04     101     126 ..      44      67 ..      11     106 .. 0.67
   2 ?   -0.1   1.3      0.15   8.7e+02      83     113 ..      84     114 ..      63     129 .. 0.64
   3 !   36.7   6.1   6.4e-13   3.8e-09       1     104 [.     130     240 ..     130     269 .. 0.72
   4 ?   -4.1   8.9       2.5   1.5e+04      63     137 ..     258     332 ..     238     338 .. 0.56
   5 !    6.8   4.2    0.0011       6.4       3      79 ..     359     442 ..     357     454 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.2
  Polysacc_synt_C 101 mgivvylllllllgllllaalallla 126
                      m++v+++   +l+ +l++++l  lla
       CTQ28444.1  44 MAAVAIGTSIWLPAILFGHGL--LLA 67 
                      555555566666666666633..222 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.15
  Polysacc_synt_C  83 iklellrrllkpllaalvmgivvylllllll 113
                      i +++++ ++   ++++++++v++   +++ 
       CTQ28444.1  84 IAPQVRQGFWLAGFVSVLIMVVLWNAGYIIS 114
                      4555678888777777777777443333333 PP

  == domain 3  score: 36.7 bits;  conditional E-value: 6.4e-13
  Polysacc_synt_C   1 vLailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllli......plfgivGaaiatvlallvvavlnlyalrrllgikl.el 87 
                      +L+ l ++++ + +++v  +   gl ++k  ++  +ig+lv++ +n+++i      p++g vG  +at+  + v+++ +l+++rr   ++    
       CTQ28444.1 130 YLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIyghfgmPELGGVGCGVATASVYWVMFASMLWWVRRARTMRDiRC 223
                      58999*********************************************95555555566************************888877543 PP

  Polysacc_synt_C  88 lrrllkpllaalvmgiv 104
                      + r+  p +a+l+  + 
       CTQ28444.1 224 VERFSGPDFAVLLRLVQ 240
                      44444443333333333 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 2.5
  Polysacc_synt_C  63 vlallvvavlnlyalrrllgiklellrrllkpllaalvmgivvylllllllgllllaal..alllavlvgalvY.lll 137
                      v+allv+ + ++  + +++ ++++ l  +l + laa+v   v    ++l  g + +a++   ++++v+v+ +v+ +++
       CTQ28444.1 258 VVALLVSPLGIIDVAGHQIALNFSSLMFVLPLSLAAAVTIRV---GFRLGQGSTIDAQVsaRTGVGVGVCLAVFtAIF 332
                      444455555555555555555553344444444555555555...666666666666444488888888888884344 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0011
  Polysacc_synt_C   3 ailalsiiflslstvlssiLqglgrqkialkalvig.alvklilnllli......plfgivGaaiatvlallvvavlnlyalrr 79 
                       + a++ i  s+++++s+iL g + ++ ++ +++ +  ++ l   +ll       p++g  G  ++ +++l+ +a++++ ++r 
       CTQ28444.1 359 LLAAIYQISDSIQVIGSGILRGYKDTRSIFFITFTAyWVLGLPSGYLLAltdmivPRMGPAGFWCGFIIGLTSAAIMMMLRMRF 442
                      567888899999**************98777666551556666666666667777********************999888765 PP

>> DUF5389  Family of unknown function (DUF5389)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.2   0.00019       1.1      19      67 ..      99     148 ..      85     179 .. 0.82
   2 !    6.2   0.2    0.0017        10      16      81 ..     246     312 ..     242     341 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00019
     DUF5389  19 lfclPvllwPlallispnllknPalsdtqvklmsiflwlyP.lvlaiiar 67 
                    + v+lw    +is+  + +P l ++ v ++  +lw  P ++++ +ar
  CTQ28444.1  99 SVLIMVVLWNAGYIISSMHNIDPLLAEKAVGYLRALLWGAPgYLFFQVAR 148
                 4456799********************************99334455676 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0017
     DUF5389  16 aialfclPvllwPlallispnllknPalsdtqvklmsiflwlyPlvl..aiiarilyklnqrkaklak 81 
                 a+alf    l+  +all+sp  + + a  +  + + s ++++ Pl l  a++ r+ ++l q ++  a+
  CTQ28444.1 246 ALALFFEVTLFAVVALLVSPLGIIDVAGHQIAL-NFSSLMFVLPLSLaaAVTIRVGFRLGQGSTIDAQ 312
                 788888888888899999997777666666555.6788899999988335899******998765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3602.83
//
Query:       CTQ28445.1  [L=97]
Description: acid shock-inducible periplasmic protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.025   14.4   1.1      0.033   14.0   1.1    1.5  1  DUF2574          Protein of unknown function (DUF2574)
       0.27   11.1   9.2       0.28   11.1   9.2    1.1  1  Spore_coat_CotO  Spore coat protein CotO
       0.52   10.6   9.7       0.63   10.3   9.7    1.1  1  YbgS             YbgS-like protein
       0.65   10.2   5.5       0.71   10.1   5.5    1.0  1  MMR1             Mitochondrial Myo2 receptor-related protein
       0.71    8.6   3.8       0.79    8.4   3.8    1.1  1  Presenilin       Presenilin
        1.5    8.7   6.2        1.9    8.3   6.2    1.3  1  Coilin_N         Coilin N-terminus
        1.6    9.1   8.0        1.9    8.9   8.0    1.1  1  CCDC53           Subunit CCDC53 of WASH complex
        2.9    7.9   8.9        3.8    7.5   8.9    1.2  1  DUF2561          Protein of unknown function (DUF2561)
        3.9    7.3   7.0          5    6.9   7.0    1.2  1  Kei1             Inositolphosphorylceramide synthase subunit 
        6.9    7.1  10.0          9    6.7  10.0    1.2  1  RNA_pol_Rpc4     RNA polymerase III RPC4


Domain annotation for each model (and alignments):
>> DUF2574  Protein of unknown function (DUF2574)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.1   1.9e-05     0.033       4      43 ..       3      42 ..       1      94 [. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-05
     DUF2574  4 yllmGiivlayGlsspvfasdtatltisGkvtaptcsaev 43
                 +l+ ++  a Glss +fa+d+a+ t s   +  t + + 
  CTQ28445.1  3 KVLALVVAAAMGLSSVAFAADAASTTPSAAASHTTVHHKK 42
                467778999*****************99999999988654 PP

>> Spore_coat_CotO  Spore coat protein CotO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   9.2   0.00016      0.28      44      92 ..      39      89 ..       1      95 [. 0.55

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
  Spore_coat_CotO 44 kkdeaeekkpekaveee..veqekkkeaaePaeqeeeekaeeeekkeeeeq 92
                     +++++++ + + a+e++    ++++k aa+Pa q++ ++a++++k ++++ 
       CTQ28445.1 39 HHKKHHKAAAKPAAEQKaqAAKKHHKAAAKPAAQQKAQAAKKHHKAAHHAA 89
                     122223333333344443233444556788888888888888877777655 PP

>> YbgS  YbgS-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   9.7   0.00035      0.63       1      87 [.       1      85 [.       1      91 [. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00035
        YbgS  1 mkklailfltaaltlgsGaalaadsnnGqansaadaGavagdakqnvaPnkvdnskinngstntnstatksttdsdklskdevhknt 87
                mkk+  l+++aa++l+s a +aad+++ + ++aa   +v   ++++ a      +k  ++  +   +a k++ +++  +++++hk +
  CTQ28445.1  1 MKKVLALVVAAAMGLSSVA-FAADAASTTPSAAASHTTVHHKKHHKAAAKPAAEQKAQAAK-KHHKAAAKPAAQQKAQAAKKHHKAA 85
                89999**********9976.56666555655666666666666666666666666666655.6666667777888888888899865 PP

>> MMR1  Mitochondrial Myo2 receptor-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.5   0.00039      0.71      68     135 ..      16      84 ..       2      96 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00039
        MMR1  68 skkaseqeatgskqnnek.elnvekskiskltiketleqlreeksqqksksaekekqkrsvaakseqes 135
                 s++a  ++a +++ +  + ++ v+++k  k   k++ eq  ++ +++++  a+ + q++++aak++++ 
  CTQ28445.1  16 SSVAFAADAASTTPSAAAsHTTVHHKKHHKAAAKPAAEQKAQAAKKHHKAAAKPAAQQKAQAAKKHHKA 84 
                 34444444444444444445667777789999****999977555555555555555555555544442 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.8   0.00044      0.79     245     292 ..      35      80 ..       4      96 .. 0.28

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00044
  Presenilin 245 keeasesskeeeseeesseksaqsseseeeseeesseaessaeessee 292
                 +++ +++++++++ + ++e++aq+   ++++++++++a++++++ +++
  CTQ28445.1  35 HTTVHHKKHHKAAAKPAAEQKAQA--AKKHHKAAAKPAAQQKAQAAKK 80 
                 111111111111111111111111..1111111111111111111110 PP

>> Coilin_N  Coilin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   6.2     0.001       1.9      88     136 ..      37      83 ..       9      88 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.001
    Coilin_N  88 esededsresasksasttkqkkkkKrekkqeeqdeqkasqaakdkkkkk 136
                     +++ + a+k a+++k +  kK++k   +   q++ qaak  k++k
  CTQ28445.1  37 TVHHKKHHKAAAKPAAEQKAQAAKKHHKAAAKPAAQQKAQAAK--KHHK 83 
                 3344555666666666666666666666555544444444443..3433 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   8.0    0.0011       1.9      44     108 ..      15      82 ..       3      96 .. 0.35

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
      CCDC53  44 LsSip...gleeveaeaaeastsddnaarkgppppppsseaaaaaaqaeeasqaeesaeeeaeeqees 108
                 LsS+    ++ +++++aa+++t+ +++++++++++p++ ++a+aa++ ++a+++++ +++++++++++
  CTQ28445.1  15 LSSVAfaaDAASTTPSAAASHTTVHHKKHHKAAAKPAAEQKAQAAKKHHKAAAKPAAQQKAQAAKKHH 82 
                 56665443333333332222222222222222222222222222222222222222222222222111 PP

>> DUF2561  Protein of unknown function (DUF2561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   8.9    0.0021       3.8      72     145 ..       4      78 ..       2      93 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0021
     DUF2561  72 vsalvivgavPl..LLrarrvaeaePaarargaperaaaapargadapaeraeaeeasaekaealreaaewssaav 145
                 v alv+++a+ l  +  a  +a++ P+a+a+ ++ +  + ++++a++pa++ +a++a++++++a ++aa+ +++a 
  CTQ28445.1   4 VLALVVAAAMGLssVAFAADAASTTPSAAASHTTVHHKK-HHKAAAKPAAEQKAQAAKKHHKAAAKPAAQQKAQAA 78 
                 668999999887223455667777788777666665555.567777888887888888888888888887776654 PP

>> Kei1  Inositolphosphorylceramide synthase subunit Kei1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   7.0    0.0028         5      81     141 ..      22      81 ..       5      95 .. 0.34

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0028
        Kei1  81 lDtvistaytvlFavdWflvleehdaaaaasta..gsasaeatagatapaavssaasatsasv 141
                 +D+  +t + ++  ++   +  +h++aaa+ +a  ++++a+++ +a+a+ a +++++++++++
  CTQ28445.1  22 ADAASTTPSAAASHTTVHHK--KHHKAAAKPAAeqKAQAAKKHHKAAAKPA-AQQKAQAAKKH 81 
                 44433333333332222222..22222222222122222222222222221.11111111111 PP

>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  10.0     0.005         9      22      66 ..      39      81 ..      13      96 .. 0.37

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.005
  RNA_pol_Rpc4 22 saaeddkseaesqsaekakaeeeskaekasgaeaeekkskkkssk 66
                  + ++++k +a++++++ka+a+++ ++  a +++a+++k ++++++
    CTQ28445.1 39 HHKKHHKAAAKPAAEQKAQAAKKHHK--AAAKPAAQQKAQAAKKH 81
                  22222222222222222222222222..22222222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2837  (0.158235); expected 358.6 (0.02)
Passed bias filter:                      867  (0.0483574); expected 358.6 (0.02)
Passed Vit filter:                       153  (0.00853366); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 797.03
//
Query:       CTQ28446.1  [L=192]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-43  146.5   0.2    5.2e-43  146.3   0.2    1.1  1  Lysine_decarbox  Possible lysine decarboxylase
    4.3e-17   62.1   0.9    5.5e-17   61.8   0.9    1.1  1  LDcluster4       SLOG cluster4 family


Domain annotation for each model (and alignments):
>> Lysine_decarbox  Possible lysine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.3   0.2   5.9e-47   5.2e-43       1     130 [.      46     174 ..      46     176 .. 0.99

  Alignments for each domain:
  == domain 1  score: 146.3 bits;  conditional E-value: 5.9e-47
                      HHHHHHHHHHTTS-EEEEEECCHHHHHCCTTT-SEEEEESSHHHHHHHHHHHESEEEE-S-SHHHHHHHHHHHHHHHTTSS-S.EEEEEEGGGC CS
  Lysine_decarbox   1 meavakgaleaggrviGiipkillaeeapneevnelvivedmeeRkealveladafvilPGGiGTleElleiltliqlgkhqkvPiillnpkgy 94 
                      m+ava++aleagg viG++p+ l+++e+++  ++el++vedm+eRk +++ lad+f++lPGG+GTleE++e +t++qlg+h+k P+ +ln+kgy
       CTQ28446.1  46 MGAVADAALEAGGVVIGVMPRGLVEREIAHRGLTELHVVEDMHERKTKMAALADGFIALPGGAGTLEEIFEQWTWAQLGIHEK-PCAFLNIKGY 138
                      9**********************************************************************************.********** PP

                      CHHHHHHHHHHHHTTSS-GGGGGCEEEESSHHHHHH CS
  Lysine_decarbox  95 ydkllefletlveegtisekareliivvddpeevle 130
                      yd+l+++++++v eg++++  +e++ ++ +++e+++
       CTQ28446.1 139 YDPLQAMVDNMVREGFMHPRYAEMLPFATSADEIIA 174
                      *******************************99975 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.9   6.1e-21   5.5e-17       4     114 ..       4     115 ..       1     128 [. 0.87

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 6.1e-21
  LDcluster4   4 igVm.GsaeteakeealelaeelGrliAkegavlltGgrt.GvmeaaskGakeagGltvGilpa.ssekehsnk.yvdiiiyTGlglagRnlilvlssd 98 
                 ig++ Gs++ + ++  le+a+ +Gr +A++g+ l+ Gg + G+m a++ +a eagG+++G++p    e+e +++ ++++ ++ ++  + R + ++  +d
  CTQ28446.1   4 IGIFcGSSA-GEHPLYLETARLVGRTLAQQGLALVYGGGKvGLMGAVADAALEAGGVVIGVMPRgLVEREIAHRgLTELHVVEDMH-E-RKTKMAALAD 99 
                 666515444.4677789*********************999**********************94455555555889********9.4.9********* PP

  LDcluster4  99 vviaiggrsGTlsEia 114
                   ia++g++GTl+Ei 
  CTQ28446.1 100 GFIALPGGAGTLEEIF 115
                 **************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1463.02
//
Query:       CTQ28447.1  [L=161]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   13.3   0.8         17    5.1   0.0    3.1  3  DUF1580    Protein of unknown function (DUF1580)
      0.056   13.4   0.0       0.61   10.0   0.0    2.0  2  PSCyt2     Protein of unknown function (DUF1549)
       0.17   12.2   0.6         44    4.4   0.0    2.8  3  QVR        Sleepless protein
       0.23   11.3   0.7         23    4.9   0.0    3.0  3  LBR_tudor  Lamin-B receptor of TUDOR domain
        2.1    8.5   4.1         77    3.4   0.1    3.2  3  Bee_toxin  Honey bee toxin


Domain annotation for each model (and alignments):
>> DUF1580  Protein of unknown function (DUF1580)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0047        17      10      24 ..       4      18 ..       1      22 [. 0.89
   2 ?    2.4   0.0     0.034   1.2e+02      11      24 ..      32      45 ..      27      49 .. 0.85
   3 ?    2.5   0.0     0.031   1.1e+02      11      24 ..      59      72 ..      54      77 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0047
     DUF1580 10 tGrrvsvstilRWsl 24
                +G+ +s  t+ RW+ 
  CTQ28447.1  4 NGLEPSTPTMSRWCS 18
                899***********7 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.034
     DUF1580 11 GrrvsvstilRWsl 24
                G+ +   t+ RW+ 
  CTQ28447.1 32 GLEPTTPTMSRWCS 45
                7788899******7 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.031
     DUF1580 11 GrrvsvstilRWsl 24
                G+ +   t+ RW+ 
  CTQ28447.1 59 GLEPTTPTMSRWCS 72
                7788899******7 PP

>> PSCyt2  Protein of unknown function (DUF1549)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00017      0.61      16      51 ..      12      47 ..       3      56 .. 0.78
   2 ?    3.2   0.0      0.02        72      21      58 ..      44      79 ..      38      85 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00017
      PSCyt2 16 kpseeadrrtllRRvsldLtGlpPtpeeveaFladk 51
                ++s  ++++   RR++  L+Gl Pt+  ++++ +++
  CTQ28447.1 12 TMSRWCSNQLSYRRIMVRLIGLEPTTPTMSRWCSNQ 47
                566778888999**************9999998544 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.02
      PSCyt2 21 adrrtllRRvsldLtGlpPtpeeveaFladksadayek 58
                ++++   +R++   +Gl Pt+  ++++ +++ +  ye+
  CTQ28447.1 44 CSNQLSYKRIMVRSIGLEPTTPTMSRWCSNQLS--YER 79
                66777789****************999955444..444 PP

>> QVR  Sleepless protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.042   1.5e+02      52      72 ..      11      31 ..       4      37 .. 0.82
   2 ?    4.4   0.0     0.012        44      52      78 ..      38      64 ..      32      71 .. 0.79
   3 ?    2.8   0.0     0.038   1.4e+02      52      78 ..      65      91 ..      59      96 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.042
         QVR 52 eavkRtCssklqiklelvdhv 72
                 +++R Cs++l+ +  +v  +
  CTQ28447.1 11 PTMSRWCSNQLSYRRIMVRLI 31
                5799********999999876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.012
         QVR 52 eavkRtCssklqiklelvdhvcmkesk 78
                 +++R Cs++l+ k  +v  +  + ++
  CTQ28447.1 38 PTMSRWCSNQLSYKRIMVRSIGLEPTT 64
                5799*************9998776555 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.038
         QVR 52 eavkRtCssklqiklelvdhvcmkesk 78
                 +++R Cs++l+ + ++v +  +++s 
  CTQ28447.1 65 PTMSRWCSNQLSYERNVVVTTGTHISG 91
                5799********999998777776665 PP

>> LBR_tudor  Lamin-B receptor of TUDOR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.11   3.9e+02      13      24 ..      13      24 ..       9      30 .. 0.82
   2 ?    1.7   0.0     0.063   2.2e+02      13      24 ..      40      51 ..      36      57 .. 0.83
   3 ?    4.9   0.0    0.0064        23      13      28 ..      67      82 ..      63      88 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
   LBR_tudor 13 mgRWPGSsLyye 24
                m+RW   +L y+
  CTQ28447.1 13 MSRWCSNQLSYR 24
                9***99999886 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.063
   LBR_tudor 13 mgRWPGSsLyye 24
                m+RW   +L y+
  CTQ28447.1 40 MSRWCSNQLSYK 51
                9****9999997 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0064
   LBR_tudor 13 mgRWPGSsLyyevkvl 28
                m+RW   +L ye +v+
  CTQ28447.1 67 MSRWCSNQLSYERNVV 82
                9***********9987 PP

>> Bee_toxin  Honey bee toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.046   1.6e+02      23      31 ..      10      18 ..       9      31 .. 0.85
   2 ?    3.4   0.1     0.021        77      22      31 ..      36      45 ..      21      58 .. 0.83
   3 ?    2.6   0.1     0.039   1.4e+02      23      31 ..      64      72 ..      62      82 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.046
   Bee_toxin 23 tPtmsikCN 31
                tPtms  C 
  CTQ28447.1 10 TPTMSRWCS 18
                9****9985 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.021
   Bee_toxin 22 VtPtmsikCN 31
                 tPtms  C 
  CTQ28447.1 36 TTPTMSRWCS 45
                59****9985 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.039
   Bee_toxin 23 tPtmsikCN 31
                tPtms  C 
  CTQ28447.1 64 TPTMSRWCS 72
                9****9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1215.70
//
Query:       CTQ28448.1  [L=75]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.56   10.3   4.2       0.71    9.9   4.2    1.1  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.2   3.9e-05      0.71      31      88 ..      12      64 ..       9      71 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 3.9e-05
  Phage_holin_3_6 31 kragsgagllgaagvlallalllllval....alalaalwlaalivaavllvlagvlalvgl 88
                     +r+++gag+ ++a  +al ++++++       +++l         + +v ++++ +  + ++
       CTQ28448.1 12 SRVIRGAGMGLGASGIALAGWFFFFSVNeykfLWGL---------LSVVGFLVGYLIYRFAY 64
                     699*******************99999885544666.........66666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 625.10
//
Query:       CTQ28449.1  [L=72]
Description: Type VI secretion ATPase, ClpV1 family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 522.79
//
Query:       CTQ28450.1  [L=294]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-26   93.4   2.5    1.9e-26   92.7   2.5    1.3  1  LysR_substrate  LysR substrate binding domain
    1.2e-17   63.6   3.4    2.3e-17   62.7   3.4    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   2.5   2.1e-30   1.9e-26       6     207 ..      95     290 ..      92     292 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 2.1e-30
                     EEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGG CS
  LysR_substrate   6 grLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsled 100
                     ++L i++ pt+a+++l p+l rf+a++P++ +++ + +  +   l  +g +D+ai +++p+++g+e++ L+ e l++v++++  L   + + +  
      CTQ28450.1  95 RSLEIAVLPTFASRWLIPRLGRFAAQHPHIVVNIAARS--DPFILPGSG-FDAAIHFEHPAWTGMEVTFLFAEYLLPVCHAA--LLTDDDL-PGL 183
                     689***********************************..6666669**.********************************..6666677.788 PP

                     GCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTCCCH CS
  LysR_substrate 101 LadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgrels 194
                     L +++ i+++++   + +  + ++ a  +p ++ + +  e+++a+v++  G+al+p+++v+ el +g lv +p+p+ p    +++l+ + g e  
      CTQ28450.1 184 LNRLTRIHRRQNPDAWLHYARECGLALDNPAQGPRYDLHEMAIAAVLSQQGVALVPKMYVESELSAGTLV-APWPGSPTLaKRFCLIKPGGVEGE 277
                     9999****9999999999999999999999****************************************.*****85556************** PP

                     HHHHHHHHHHHHH CS
  LysR_substrate 195 pavrafidflrea 207
                     pa++ f ++l+++
      CTQ28450.1 278 PALQMFERWLQTE 290
                     **********976 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   3.4   2.5e-21   2.3e-17       4      59 ..      11      66 ..       9      67 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 2.5e-21
                HHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  4 lrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l +f+a a++g+f+rAA eL l+  a+srqi+rLE++l+ +Lf+Rtg ++rL +aG
  CTQ28450.1 11 LLAFEAAARHGNFARAAAELALTEGAISRQIARLEALLDSKLFDRTGSRVRLNPAG 66
                679******************************************999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2366.98
//
Query:       CTQ28451.1  [L=171]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1412.24
//
Query:       CTQ28452.1  [L=278]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-26   93.3   1.8    4.3e-26   92.2   1.8    1.5  1  Lactamase_B      Metallo-beta-lactamase superfamily
    4.5e-10   39.4   0.0    6.9e-10   38.8   0.0    1.3  1  Lactamase_B_2    Beta-lactamase superfamily domain
    3.6e-05   23.7   0.0    9.8e-05   22.3   0.0    1.6  1  Lactamase_B_3    Beta-lactamase superfamily domain
     0.0013   18.2   0.0      0.003   17.0   0.0    1.6  2  Lactamase_B_6    Metallo-beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.043   14.4   0.2       0.57   10.8   0.0    2.8  3  CysA_C_terminal  CysA C-terminal regulatory domain


Domain annotation for each model (and alignments):
>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   1.8   1.2e-29   4.3e-26       8     197 .]      58     257 ..      56     257 .. 0.94

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 1.2e-29
                  EEEEEETTCEEEES--SCHHHHHHHH...HHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHH..... CS
  Lactamase_B   8 syliegdggviLiDtGtsteaaraal...elaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkgll..... 97 
                  +yli+g g ++L+DtGt+++++   +   +la+lg++p+++da++lTH+H+DHiGgl   + +  +p + v + +++  ++ a   +   +++     
   CTQ28452.1  58 AYLIRGRGNTVLVDTGTGGANGVGGEliaNLARLGVGPEEIDAILLTHAHPDHIGGLLSAAGTPAYPNATVFLPTRESAYWLATSTFDNASDRgrrnv 155
                  7*************************************************************9999999999999999999999888888888999** PP

                  ..TTCHCGCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSHHCCCCCC.TTCEEE-SHCHHHHHHHHHHHHHHHCHSEE CS
  Lactamase_B  98 ..lagvsadkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallagetgridltlrgaevrdpsdaekyldsllklaglkaevl 193
                     ++v a+     + ++d+++  + +  + +g+++gh+++++e+g+ ++l+ GD ++ +++ + +++  +a++ dp +a+ +++ ll+ a+++  ++
   CTQ28452.1 156 llVRRVLANCAAQIRGVDDEEVIAGIRPCPLPGHTPGHTGYRLEAGDTSLLIWGDIVHFPSIQSARPEASVAFDVDPEQARRTREILLRQAASERWLI 253
                  *977788888889999999999999999***************************************************************9998887 PP

                  EESS CS
  Lactamase_B 194 vpgH 197
                  +  H
   CTQ28452.1 254 AGMH 257
                  7655 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.9e-13   6.9e-10       2     147 ..      67     215 ..      66     240 .. 0.70

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.9e-13
                    EEEES--TT........HHHHHTCGGS--S.SS--..SEEEEE-SS--HHHHGGGGCCCC..C--EEEEEEEE.HHHHHHCCTTCGHHHCHTT... CS
  Lactamase_B_2   2 riLiDagpd........lrqqalralqPve.lrdelppidaVllthaHyDHlaglltlre..lrpkklplyap.kgvlavleanfvylaleee... 82 
                     +L+D+g++        l ++        + l   +++ida+llthaH DH+ gll+ +    +p +++++ p ++ +  l++++  +a+++    
     CTQ28452.1  67 TVLVDTGTGgangvggeLIAN-------LArLGVGPEEIDAILLTHAHPDHIGGLLSAAGtpAYP-NATVFLPtRESAYWLATSTFDNASDRGrrn 154
                    699*****9877744443333.......222566788**********************985333.467764424444444444444444444555 PP

                    ..........TTEEEEEE-TTSEEEECSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEECTTEEEEEESS-S--- CS
  Lactamase_B_2  83 ..........pavnvheldwgesfelgdggleitatparhksgrrldrnagdtlGlriegggkrvyyigDtgyip 147
                              +a +++ +d +e   ++  g  i++ p+++ ++           G+r+e g+ +++  gD  ++p
     CTQ28452.1 155 vllvrrvlanCAAQIRGVDDEE--VIA--G--IRPCPLPGHTPG--------HTGYRLEAGDTSLLIWGDIVHFP 215
                    5444477766666666666333..444..4..9**********9........9********************99 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.7e-08   9.8e-05       9     123 ..      58     220 ..      54     230 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.7e-08
  Lactamase_B_3   9 sflletagarilvDPf.........kanlgyeppa...........eeaDlvlisqaledHahletlkql.......................... 58 
                    ++l++++g ++lvD +         +                    ee+D++l+++a++dH      + +                          
     CTQ28452.1  58 AYLIRGRGNTVLVDTGtggangvggE--------LianlarlgvgpEEIDAILLTHAHPDHIGGLLSA-Agtpaypnatvflptresaywlatstf 144
                    689***********995444444330........244666666666***************8543222.235665666666666555555555555 PP

  Lactamase_B_3  59 .......aenvkvlee...geslevggleiravatshdav..ggsergenngflleqdgltiyhlGhlahelsseel 123
                            +nv ++++     +++++g++ ++v + ++++  +g+++g  +g++le ++ +++  G+++h +s ++ 
     CTQ28452.1 145 dnasdrgRRNVLLVRRvlaNCAAQIRGVDDEEVIAGIRPCplPGHTPG-HTGYRLEAGDTSLLIWGDIVHFPSIQSA 220
                    555554444444444343334466777777777777777732466666.6999999999999999999997766554 PP

>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   8.4e-07     0.003       7      53 ..      66     115 ..      60     134 .. 0.74
   2 ?   -2.8   0.1         1   3.6e+03     139     158 ..     188     207 ..     186     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.4e-07
  Lactamase_B_6   7 vkiLlDvGwdeskvslesalkelekv.i..ptvdliLLshatlehlGaya 53 
                     ++L+D G+ + +    + +++l +  +  +++d+iLL+ha ++h+G++ 
     CTQ28452.1  66 NTVLVDTGTGGANGVGGELIANLARLgVgpEEIDAILLTHAHPDHIGGLL 115
                    5789999998887777778888888642448****************963 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1
  Lactamase_B_6 139 GhtlGGtiWkiskesekivY 158
                    Ght+G t ++++ +  +++ 
     CTQ28452.1 188 GHTPGHTGYRLEAGDTSLLI 207
                    9******9999988777765 PP

>> CysA_C_terminal  CysA C-terminal regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         5   1.8e+04      32      42 ..      89      99 ..      89      99 .. 0.78
   2 ?   10.8   0.0   0.00016      0.57      25      39 ..     170     184 ..     165     186 .. 0.89
   3 ?   -0.5   0.0      0.53   1.9e+03      11      29 ..     250     268 ..     246     272 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5
  CysA_C_terminal 32 vvayVRPhDle 42
                     ++++V P++++
       CTQ28452.1 89 ARLGVGPEEID 99
                     57888899996 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00016
  CysA_C_terminal  25 agadgqevvayVRPh 39 
                       g+d++ev+a++RP+
       CTQ28452.1 170 RGVDDEEVIAGIRPC 184
                      589***********8 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.53
  CysA_C_terminal  11 klriGglalpvPelagadg 29 
                      ++ i+g++l +P  a +++
       CTQ28452.1 250 RWLIAGMHLGLPGFARVEN 268
                      67799*******7666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2381.09
//
Query:       CTQ28453.1  [L=49]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      191  (0.0106531); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 461.71
//
Query:       CTQ28454.1  [L=144]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-09   36.3   0.1    9.7e-09   35.2   0.1    1.5  1  Trans_reg_C  Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
       0.17   12.0   0.0       0.22   11.7   0.0    1.1  1  DUF4178      Domain of unknown function (DUF4178)


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.1   1.1e-12   9.7e-09       3      76 ..      34     109 ..      32     110 .. 0.93

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.1e-12
                  EEE-SHHHHHHHHHHHHT.TTSEEEHHHHHHHHTTTTS.TSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEE CS
  Trans_reg_C   3 eveltpkefklLelLlen.pgrvvsreeLleevwgede.dvddrtvdvhisrLRkkLeddekkprlIetvrgvGYr 76 
                  +v+l ++   lLe+Ll++ ++r vs eeL+ +vw++++  ++++ + + i+ L   L++++ ++ lI  v+  GY 
   CTQ28454.1  34 QVQLRSTMACLLEYLLAHgRERLVSDEELMINVWEKNNlRPSAQRLWQVIQSLKSRLHQAGVESALIIRVKCAGYY 109
                  6899999999***998885789*****************************************************7 PP

>> DUF4178  Domain of unknown function (DUF4178)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.4e-05      0.22       5      95 ..      25     120 ..      23     128 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.4e-05
     DUF4178   5 ivtldgedyvVvGrlrydeggyrwtEylledgsegrwLsveelelalletvpgrelepgewpe..........apedppe.....tltldgkrYrleer 88 
                 i+tl+g++ +V+ r ++ +      Eyll  g+e+   s+eel + ++e+ + r+  ++ w+           a            ++++   Y+  + 
  CTQ28454.1  25 IITLRGTRTQVQLRSTMACL----LEYLLAHGRER-LVSDEELMINVWEKNNLRPSAQRLWQViqslksrlhqA-----GvesalIIRVKCAGYYINNV 113
                 79999999999999999997....9********99.888888*******9999988888888776555444322.....13334566666667777777 PP

     DUF4178  89 gtarvta 95 
                 + a++++
  CTQ28454.1 114 YVAEIYS 120
                 7777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1264.78
//
Query:       CTQ28455.1  [L=238]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.014   15.2   0.2      0.099   12.5   0.0    2.3  2  HTH_23      Homeodomain-like domain
      0.023   15.3   1.6      0.023   15.3   0.3    1.6  2  DUF2285     Uncharacterized conserved protein (DUF2285)
       0.04   12.8   0.1       0.06   12.3   0.1    1.2  1  Fucokinase  L-fucokinase


Domain annotation for each model (and alignments):
>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.23   1.4e+03      12      29 ..      95     112 ..      92     115 .. 0.79
   2 ?   12.5   0.0   1.7e-05     0.099       8      36 ..     142     170 ..     137     175 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.23
      HTH_23  12 lllaeGlsvreIAreLgv 29 
                 l + ++  vre++r+L +
  CTQ28455.1  95 LWVSQREAVREVSRLLRC 112
                 566678889999999976 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.7e-05
      HTH_23   8 lrillllaeGlsvreIAreLgvsrrTvyr 36 
                 +r++ +  +G+sv++ A+ Lg++r  vy+
  CTQ28455.1 142 MRMIDATMKGQSVHQMAATLGINRKRVYN 170
                 468999999******************97 PP

>> DUF2285  Uncharacterized conserved protein (DUF2285)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.3   3.9e-06     0.023      12      73 ..     103     168 ..      89     177 .. 0.77
   2 ?   -2.9   0.0       1.7     1e+04      22      37 ..     207     223 ..     191     230 .. 0.47

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.9e-06
     DUF2285  12 laalarlaralagrapgplaralalt...pqqrrrllhlLqalDarlagaslreiAevl.fgaerv 73 
                 ++ ++rl+r la+r+ +  +r ++ +   +q++ + ++ ++++Da+++g+s +++A++l  +++rv
  CTQ28455.1 103 VREVSRLLRCLAERRWPLVPRHQRQSvsfRQRAPLNRLEMRMIDATMKGQSVHQMAATLgINRKRV 168
                 5678899999997776666655443311155666778899******************98777765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.7
     DUF2285  22 la.grapgplaralalt 37 
                 l+ +++++  +ra +++
  CTQ28455.1 207 LTtAANATLSPRAASRP 223
                 22233333333333344 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     1e-05      0.06     191     253 ..     148     210 ..     137     230 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1e-05
  Fucokinase 191 fknssnvtkeeeslreareelwnlLkgtpLnvillnnskFyHlgttaeylehltkdaslkeel 253
                 + + ++v +  ++l   r++++n L++ + n  l++ s+F H+ t +  ++ l+ d   +++ 
  CTQ28455.1 148 TMKGQSVHQMAATLGINRKRVYNGLERIKVNFRLVSHSHFHHFMTDRLSFSRLSADLRCLTTA 210
                 4467889999999999******************************99999998888777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 2094.93
//
Query:       CTQ28456.1  [L=69]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-08   32.9   3.3    5.9e-08   32.6   3.3    1.2  1  DUF1471   Protein of unknown function (DUF1471)
  ------ inclusion threshold ------
      0.045   13.8   1.9      0.052   13.6   1.9    1.1  1  PepSY_2   Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   3.3   6.6e-12   5.9e-08       8      54 ..      24      67 ..      22      69 .] 0.91

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 6.6e-12
                EECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEE CS
     DUF1471  8 svsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAel 54
                svs  +++++ +e++++++A+e+GA +Y Itsa+   ++ +h tAel
  CTQ28456.1 24 SVSATASTLDRAEAKIAAQAAEQGA-SYKITSAQF--NNRVHMTAEL 67
                55666*******************9.58*******..********98 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.9   5.8e-06     0.052       3      51 ..       8      57 ..       6      64 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.8e-06
     PepSY_2  3 alalalallaaaAlAgrrdtdspkadwlpreklvakleaqGy..kvkkiev 51
                 ++ al+l++aa +A++   ++ + d   ++k+ a++++qG   k++++++
  CTQ28456.1  8 VAVSALSLFSAASFAQSVSATASTLDRA-EAKIAAQAAEQGAsyKITSAQF 57
                6788999********7777777777765.8888888888885337776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 604.60
//
Query:       CTQ28457.1  [L=211]
Description: carbonic anhydrase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-47  161.7   0.0    1.9e-47  161.4   0.0    1.1  1  Pro_CA    Carbonic anhydrase


Domain annotation for each model (and alignments):
>> Pro_CA  Carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.4   0.0   1.1e-51   1.9e-47       1     155 [.      34     188 ..      34     189 .. 0.90

  Alignments for each domain:
  == domain 1  score: 161.4 bits;  conditional E-value: 1.1e-51
                 EEEEEETTTTS-HHHHTTS-TTSEEEEEETTG---TT...-HHHHHHHHHHHHTS--SEEEEEEETT-HHHHHHHSHHCCSTTSSHHHHHHHHHHHHHH CS
      Pro_CA   1 alvigCsDSRvppelitdagpGdlFvvrnvgnlvppa...dssvlaaleyAvevlkvkhivVlGHskCGavkaalkaekseeeagaidkwlekireale 96 
                 al+i+CsDSR++pel+t+++pG+lFv+rn+gn+vp+      +v+a++eyAv +l+v +iv++GHs+CGa+ka +++ +  e ++a+++wl+ +++a++
  CTQ28457.1  34 ALFISCSDSRLVPELVTQQEPGQLFVIRNAGNIVPSFgpePGGVSATIEYAVVALGVTDIVICGHSNCGAMKAIATC-QCLEPMPAVSHWLRYADAAKA 131
                 69********************************98899899******************************77776.45888*********9999988 PP

                 HCHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHTTS-EEEEEEEETTTTE CS
      Pro_CA  97 kveeelesekekearerlleeenVaeqlenLlekpvvreavekgklkvhGlvydletGe 155
                  ve+++ +  +++++ + +++enV +ql+n++++p v+  +++++l++hG++yd+etG+
  CTQ28457.1 132 VVEKKTWA--SETDKVNGMVQENVIAQLNNIKTHPSVAVGLRDHTLRLHGWFYDIETGD 188
                 88765333..445555555***************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1786.04
//
Query:       CTQ28458.1  [L=209]
Description: Threonine efflux protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-35  121.0   8.8    4.9e-35  120.7   8.8    1.1  1  LysE      LysE type translocator
  ------ inclusion threshold ------
      0.089   12.5   7.5       0.41   10.3   7.5    2.2  1  TerC      Integral membrane protein TerC family


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   8.8   5.5e-39   4.9e-35       2     191 ..      15     204 ..      14     206 .. 0.97

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 5.5e-39
        LysE   2 slllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksve..aslvk 98 
                 ++++spGp++++v +++++r++ +g+++alg   g a++ ++++lGl+ +l+a p ++  l+++Gg+yLlwlg++ +r + +++  +++     +sl k
  CTQ28458.1  15 MGVISPGPSFIFVARNAVARSRLHGMVTALGTGAGAAIFSIMAMLGLQKVLTAVPELFIGLKVAGGLYLLWLGYKIFRGSAQPMDFSASGMAgnRSLLK 113
                 6789*********************************************************************************999998899***** PP

        LysE  99 pflkglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvlriinvvvgvlligfavklll 191
                 +f+ gl + lsNPk+ l ++s++ all +  q ++  ++i  +  ++ ++ w+sl+a++ ++ ++r+ + +++r i++ ++ +l +++++l+ 
  CTQ28458.1 114 TFRDGLYTQLSNPKTALVFASIFTALLPA--QIPTVFYYIVPLMSFLIDVSWYSLVALVLSADRPRRVYLRLKRRIDIATATVLGALGLRLIA 204
                 ****************************5..99999999999************************************************986 PP

>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   7.5   4.6e-05      0.41      38      82 ..      40      95 ..       2     209 .] 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.6e-05
        TerC 38 ilgAlvlRi.llillavallel..........fdlilligglfLlytavkellekr 82
                ++ Al + + ++i++++a+l l          f  ++++ggl+Ll++++k ++ + 
  CTQ28458.1 40 MVTALGTGAgAAIFSIMAMLGLqkvltavpelFIGLKVAGGLYLLWLGYKIFRGSA 95
                4444444321233333333333444444677679999*************998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1676.85
//
Query:       CTQ28459.1  [L=256]
Description: DeoR family transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-40  138.7   0.1      2e-40  138.4   0.1    1.2  1  DeoRC           DeoR C terminal sensor domain
    1.1e-14   53.9   0.0    2.1e-14   53.0   0.0    1.4  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    2.6e-07   30.5   0.0    4.5e-07   29.7   0.0    1.3  1  HTH_11          HTH domain
    5.5e-05   23.1   0.0    0.00011   22.2   0.0    1.5  1  HTH_Mga         M protein trans-acting positive regulator (MG
    0.00025   20.8   0.2    0.00054   19.7   0.2    1.5  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
     0.0031   17.6   0.1      0.006   16.6   0.1    1.4  1  HTH_20          Helix-turn-helix domain
      0.004   17.5   0.0     0.0092   16.3   0.0    1.6  1  Rrf2            Transcriptional regulator
     0.0047   16.6   0.1      0.011   15.4   0.0    1.7  2  GntR            Bacterial regulatory proteins, gntR family
      0.005   16.8   0.0      0.011   15.8   0.0    1.5  1  Put_DNA-bind_N  Putative DNA-binding protein N-terminus
  ------ inclusion threshold ------
      0.033   14.1   0.0       0.07   13.1   0.0    1.6  1  HTH_12          Ribonuclease R winged-helix domain
      0.036   13.6   0.1      0.071   12.7   0.1    1.5  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.082   12.7   0.3       0.21   11.4   0.1    1.7  2  Peptidase_C41   Hepatitis E cysteine protease
       0.12   12.2   0.1       0.26   11.2   0.1    1.5  1  MarR_2          MarR family
       0.12   12.4   0.0       0.27   11.3   0.0    1.5  1  FeoC            FeoC like transcriptional regulator
       0.13   12.9   0.2       0.26   11.9   0.2    1.5  1  HTH_32          Homeodomain-like domain
       0.16   12.2   0.0        0.3   11.3   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4   0.1   1.8e-43     2e-40       2     159 ..      78     235 ..      77     236 .. 0.98

  Alignments for each domain:
  == domain 1  score: 138.4 bits;  conditional E-value: 1.8e-43
       DeoRC   2 naeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflga 100
                 n + K rIA++ a+l+++g tif+d+GtT+l++a+aL+++  ltvvTns ++a++L +k+ ++v++lGG+v+++s+ +vg++a  +++ + +d+ f+g 
  CTQ28459.1  78 NRAIKLRIAQQCARLVKPGGTIFIDTGTTNLAMAEALPAELALTVVTNSPEIAAVLVKKPLYDVVMLGGQVQRASGGCVGAAAVAQVQGMLFDQGFIGG 176
                 67789********************************************************************************************** PP

       DeoRC 101 ngidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitD 159
                 +++ +e+glt +d+++ e+k+a+i++ +++i+   s+K+   a + +aa ++id+l+++
  CTQ28459.1 177 CAMAPESGLTGFDYADCEFKKAVIKQCSEIIVGLTSDKIPAAARFVVAASSDIDVLVVE 235
                 ********************************************************986 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   1.9e-17   2.1e-14       1      53 [.      11      63 ..      11      66 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1.9e-17
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavs 53
                R++ i + l++ g +   el+++l+vSe TiRRDL eL+ +g  ++++GGav+
  CTQ28459.1 11 RQALICQILQENGRVVCAELAARLQVSEHTIRRDLHELSREGFCKKVYGGAVL 63
                999************************************************86 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0     4e-10   4.5e-07       1      44 [.      11      55 ..      11      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 4e-10
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg..v 44
                R+  i ++L +++g +  +eLA +L vS+ t+rrd+ +L+  g   
  CTQ28459.1 11 RQALICQIL-QENGRVVCAELAARLQVSEHTIRRDLHELSREGfcK 55
                677788888.99999*************************999544 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   9.7e-08   0.00011       4      45 ..       9      49 ..       8      58 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 9.7e-08
     HTH_Mga  4 ikrklkLlelLteneksltldelakeLglseltlqsdiseLn 45
                ++r++ ++ +L e +++    ela +L  se t++ d++eL 
  CTQ28459.1  9 QQRQALICQILQE-NGRVVCAELAARLQVSEHTIRRDLHELS 49
                79***********.**************************96 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   4.8e-07   0.00054      10      36 ..      17      43 ..      14      48 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.8e-07
  HTH_AsnC-type 10 eaLqedaRisyaeLAervGlSestvlr 36
                   ++Lqe++R  +aeLA+r+ +Se t++r
     CTQ28459.1 17 QILQENGRVVCAELAARLQVSEHTIRR 43
                   69***********************98 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   5.3e-06     0.006      15      53 ..      15      53 ..      11      57 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.3e-06
                HHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTT CS
      HTH_20 15 ilraLaraegltaselaerldlskntlsyHLrvLeeagL 53
                i++ L +++ + ++ela+rl++s  t+++ L++L++ g+
  CTQ28459.1 15 ICQILQENGRVVCAELAARLQVSEHTIRRDLHELSREGF 53
                8999999***************************99886 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.2e-06    0.0092      19      60 ..      19      59 ..       7      67 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.2e-06
                HSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
        Rrf2 19 keeeeepvsseeiaerqnispsylekilakLrkaglvksvrG 60
                ++e+++ v  +e+a+r ++s++ +++ l++L+++g+ k v G
  CTQ28459.1 19 LQENGR-VVCAELAARLQVSEHTIRRDLHELSREGFCKKVYG 59
                444544.999**************************998766 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   9.9e-06     0.011      17      53 ..      18      53 ..      10      62 .. 0.82
   2 ?   -3.7   0.0       8.7   9.8e+03      19      30 ..     109     120 ..     106     121 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.9e-06
                SS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTS CS
        GntR 17 elrpGdkLPsereLaaefgVsrttvReALrrLeaegl 53
                 l+ + +     eLaa++ Vs +t+R+ L +L++eg 
  CTQ28459.1 18 ILQENGRV-VCAELAARLQVSEHTIRRDLHELSREGF 53
                55666666.678***********************95 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 8.7
                 -TTSB---HHHH CS
        GntR  19 rpGdkLPsereL 30 
                 +  ++LP+e +L
  CTQ28459.1 109 AMAEALPAELAL 120
                 566789988666 PP

>> Put_DNA-bind_N  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.6e-06     0.011      21      48 ..      20      45 ..      15      46 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.6e-06
                    HHTT--EE-HHHHHHHCTS-HHHHHHHH CS
  Put_DNA-bind_N 21 keegveriSSteLaealgvtaaqvRKDL 48
                    +e+g  r+ + eLa++l+v++ ++R+DL
      CTQ28459.1 20 QENG--RVVCAELAARLQVSEHTIRRDL 45
                    4444..999******************9 PP

>> HTH_12  Ribonuclease R winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.2e-05      0.07       3      58 ..      15      63 ..      13      71 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.2e-05
      HTH_12  3 ILkilaesdkpigakeiaeeLkkrgydigeravRyrLrkleergltrrvgyagrel 58
                I +il+e+ +++ a e+a  L+     ++e ++R+ L  l ++g+ ++v y+g+ l
  CTQ28459.1 15 ICQILQENGRVVCA-ELAARLQ-----VSEHTIRRDLHELSREGFCKKV-YGGAVL 63
                66788888886655.5677775.....677888*************998.555543 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   6.4e-05     0.071      10      36 ..      17      43 ..      10      53 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.4e-05
      HTH_24 10 elLqknprisqreLAerlglSpstvnr 36
                ++Lq+n+r   +eLA rl +S  t++r
  CTQ28459.1 17 QILQENGRVVCAELAARLQVSEHTIRR 43
                79******************9988887 PP

>> Peptidase_C41  Hepatitis E cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.5   6.2e+03     116     124 ..      29      37 ..      12      64 .. 0.54
   2 ?   11.4   0.1   0.00018      0.21      46     132 ..      85     170 ..      75     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.5
  Peptidase_C41 116 rltatvkvs 124
                     l+a ++vs
     CTQ28459.1  29 ELAARLQVS 37 
                    233334444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00018
  Peptidase_C41  46 lgqectcflqpaegavgdqghdneayegsdvdpaesaisdisgsyvvpgt.alqplyqaldlpaeivaragrltatvkvsqvdgridc 132
                    + q+c+ +++p      d g  n a   ++  pae a++ ++ s  +      +ply+ + l  ++   +g    +  v+qv+g +  
     CTQ28459.1  85 IAQQCARLVKPGGTIFIDTGTTNLAM--AEALPAELALTVVTNSPEIAAVlVKKPLYDVVMLGGQVQRASGGCVGAAAVAQVQGMLFD 170
                    689********************997..5778**********998777651568***********999999999999******98755 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00023      0.26      14      50 ..      18      53 ..       6      57 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00023
                HHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTS CS
      MarR_2 14 LgrrpgrdltvgelarrlglsksavsrilkrLvaaGL 50
                +  + gr +  +ela+rl++s +++ r l +L++ G+
  CTQ28459.1 18 ILQENGR-VVCAELAARLQVSEHTIRRDLHELSREGF 53
                5555554.7779********************99986 PP

>> FeoC  FeoC like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00024      0.27       7      47 ..      17      57 ..      14      64 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00024
        FeoC  7 eyleergrvslkeLsrhfkaspealeamLeqwvrkGrvekv 47
                + l+e+grv   eL+ ++++s+ +++  L  + r G  +kv
  CTQ28459.1 17 QILQENGRVVCAELAARLQVSEHTIRRDLHELSREGFCKKV 57
                679**********************9988888888866665 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00023      0.26      29      71 ..       7      43 ..       5      45 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00023
      HTH_32 29 lsdevrariiallreeprWsprqlaarlaeregvkvShstvyr 71
                ++++ +a i+++l+e+ r  + +laarl      +vS+ t++r
  CTQ28459.1  7 FPQQRQALICQILQENGRVVCAELAARL------QVSEHTIRR 43
                578899999****6666***********......9*******9 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00027       0.3      18      53 ..      20      55 ..      14      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
                    HHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 18 eekkvvktkdlaerLnvspssVsemlkkLekdGyve 53
                     e++ v  ++la rL+vs  ++   l +L+++G+ +
      CTQ28459.1 20 QENGRVVCAELAARLQVSEHTIRRDLHELSREGFCK 55
                    466777789************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2075.54
//
Query:       CTQ28460.1  [L=144]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-08   33.5   0.0      5e-08   33.2   0.0    1.1  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
    9.8e-05   23.1   0.0    0.00013   22.7   0.0    1.1  1  Glyoxalase_6  Glyoxalase-like domain
    0.00031   21.0   0.1    0.00058   20.1   0.1    1.4  2  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   8.4e-12     5e-08       1     128 []      19     142 ..      19     142 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 8.4e-12
                 EEEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTG CS
  Glyoxalase   1 gidhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagv 99 
                 +i+h+al +++l+  ++F+ + + + + +k+  +++ +++ + +  +++ +iel+  +  + a +     +++ +h+a+ +   e+v++  +r+ +ag 
  CTQ28460.1  19 KIAHFALWTQQLDVQARFWVDFFAASINEKYLSQTNPGFASYFVTIDDEVVIELMTKPGLQQACADN--NHTGWAHLALSVGGAEQVDAIAQRAGAAG- 114
                 699****************************966666888888888888999***999999999998..33489************************. PP

                 EEEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase 100 kvvaepgrhyfgalysfyfrDpdGillei 128
                  +   p r+  ++ y +++ DpdG+l+ei
  CTQ28460.1 115 -ILISPPRTTGDGYYEAVIADPDGNLIEI 142
                 .66667799999999999**********8 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.1e-08   0.00013       5     106 ..      26     142 ..      22     143 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.1e-08
  Glyoxalase_6   5 daadpaalaaFwaaalgweveree............aaledpegvgpaaedaatllfqrvpe..........paknrvHldlavedldaevarlval 79 
                    +++ +  a+Fw + +  +  ++             ++++          d++ + + + p           +++   Hl l+v  +++  a + ++
    CTQ28460.1  26 WTQQLDVQARFWVDFFAASINEKYlsqtnpgfasyfVTID----------DEVVIELMTKPGlqqacadnnhTGW--AHLALSVGGAEQVDAIAQRA 110
                   57888999*********99999998855555555544444..........4444444444445555544543555..9******6665555555566 PP

  Glyoxalase_6  80 GArvlreprdgthgr.....vlaDPeGneFcv 106
                   GA  +  +  +t+g+     v+aDP+Gn   +
    CTQ28460.1 111 GAAGILISPPRTTGDgyyeaVIADPDGNLIEI 142
                   6665555555555556799*********8876 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.036   2.1e+02      68      81 ..      19      32 ..      14      39 .. 0.83
   2 !   20.1   0.1   9.7e-08   0.00058       2      93 ..      22     117 ..      21     130 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.036
                  EEEEEEEEES-HHH CS
  Glyoxalase_4 68 glhhlaywvddlda 81
                  ++ h+a+w+++ld 
    CTQ28460.1 19 KIAHFALWTQQLDV 32
                  689******98885 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 9.7e-08
                   EEEEE-S-HHHHHHHHHH.TT-EESS--E..EETTTTEEEEEEEETTEEEEEEEESS.TT-THHHTS-EEEEEEEEE...S-HHHHHHHHCTTTEEE CS
  Glyoxalase_4   2 QigivVeDleaavarfsallGvgpwqryrd.epqevdlafallgsgsvqieLieple.gpeflaehgeglhhlaywv...ddldaavarleeqGfev 93 
                   + +++++ l+  ++++ + +     ++y + +  ++  +f++  + +v ieL+     ++   +++++g  hla+ v   +++da+ +r+ ++G+ +
    CTQ28460.1  22 HFALWTQQLDVQARFWVDFFAASINEKYLSqTNPGFASYFVTIDD-EVVIELMTKPGlQQACADNNHTGWAHLALSVggaEQVDAIAQRAGAAGILI 117
                   888999999999999999999887777765145578888888888.5******755515566666***********955568999999999999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1296.00
//
Query:       CTQ28461.1  [L=227]
Description: Chloramphenicol O-acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-21   76.9   0.0    2.3e-21   76.7   0.0    1.0  1  CAT           Chloramphenicol acetyltransferase
     0.0067   15.9   0.0        1.1    8.6   0.0    2.2  2  2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catal


Domain annotation for each model (and alignments):
>> CAT  Chloramphenicol acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.0   2.5e-25   2.3e-21       1     199 [.       4     195 ..       4     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 2.5e-25
         CAT   1 ftlidletwerkehfehylkvvkctysltvelditalkkeikkkklkvypaliyllarvvnkhkefrmalkdeelvvWdsvnPaytvfnketetfssiw 99 
                 +++id  +w r++hf  y+++++ +++l v +   +l +  k +++ ++   +y+l r+ n  +++r  ++++e++ +ds+  + t +    e f  +w
  CTQ28461.1   4 YRIIDTASWPRRDHFTFYRQFANPSFNLCVPIAAQRLYECAKDRRVSFFQLALYALLRAANGVPQLRQRVRNDEVIEYDSLAVM-TPVMTVGEGFRQVW 101
                 789****************************************************************************98754.44455689****** PP

         CAT 100 teydedfaeflktyaediaeysektklfPksdllentlnvsslPWvsftsfnlnvaneedyllPiftigkykkeedkvllPvaiqvhhavcdGfhaarl 198
                 ++  ++fa f + ++ +i   + +t+  P     e  +  s lPW+ fts++   +      +P +t gk ++     ++Pva +  ha +dG ha+r+
  CTQ28461.1 102 CDNAPEFAAFSAAATPKIVAAR-ETSPAPLIVDGEHFICASCLPWLHFTSMTHAEYAV-GAAVPALTWGKLQNG----VIPVAGRFNHAFVDGLHASRF 194
                 ***************9998765.45566777677889999**********99765554.5579*******9754....79******************9 PP

         CAT 199 l 199
                  
  CTQ28461.1 195 Y 195
                 6 PP

>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00013       1.1      58      95 ..      47      82 ..      26      92 .. 0.82
   2 !    5.3   0.0    0.0013        12     197     232 ..     174     209 ..     152     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00013
                  ----HHHHHHHHHHHHHHH-GGGG-EE.EESEEEE--S CS
  2-oxoacid_dh 58 akltlldflikavalAlkefPelnasvdeeekeivvkk 95
                   +++++++ ++a+++A + +P+l+ +v ++e  ++ ++
    CTQ28461.1 47 RRVSFFQLALYALLRAANGVPQLRQRVRNDE--VIEYD 82
                  489************************8888..55554 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0013
                   EEEEEEEEETTT--HHHHHHHHHHHHHTT-HHXXXX CS
  2-oxoacid_dh 197 vmtlslsaDHRvidGaeaarFlntlkkllenpeell 232
                   v+++   + H  +dG +a+rF + +++  ++pe+l 
    CTQ28461.1 174 VIPVAGRFNHAFVDGLHASRFYALVEEGFNDPERLW 209
                   688889999***********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1806.26
//
Query:       CTQ28462.1  [L=567]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-80  269.3   2.3    6.3e-80  268.9   2.3    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.9   2.3   3.5e-84   6.3e-80       1     374 [.     104     486 ..     104     489 .. 0.92

  Alignments for each domain:
  == domain 1  score: 268.9 bits;  conditional E-value: 3.5e-84
                 SEEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC...........TCTEEEEEEEETTEEEEEESSETTT CS
   SBP_bac_5   1 evvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee...........dqdikkveavddytvrftlkkpnal 88 
                 ++vp+LAes w+vs+D+k+yt+kLR+g++FsDG+pltAeDv+f++  lldp++ + +  +l++            +++ + +++d++t+++t+++p   
  CTQ28462.1 104 KLVPGLAES-WTVSPDNKVYTIKLRPGLTFSDGSPLTAEDVAFTLTVLLDPKYDGDTDITLANiaggadykagkADSVSGLKVIDPLTLQVTTTQP--- 198
                 689******.7**************************************************99*********************************... PP

                 TTTHCHHHHHHHGC......CHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEE.ES CS
   SBP_bac_5  89 fltllaavpasiak......kaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddv.ae 180
                   t+la++  ++ +        +  + d+      kp g+GPY+ +++ pgq+i++ +n +++ +g p   r++++v  ++++  + +q+Ge d+    
  CTQ28462.1 199 GATTLAKIGGPVLSkawygkGYQRGNLDYLRSLHGKPLGNGPYVYDKYIPGQEIRFHANSHFY-RGTPPTPRFIYRVT-NPSTNFQLFQTGETDYDaFT 295
                 555666666666666667777788999999*******************************88.9*************.**************865477 PP

                 TTCCTHCHHHHHTTEEEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHH CS
   SBP_bac_5 181 pppsdieqlkeakglkvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklL 279
                   p+dieqlk+    ++ +   ++ +  + fN ++p ++dkrvRqAl y + r++++++v++gy+++a  +++p+s++++ e  ++y +ydp++AkklL
  CTQ28462.1 296 SRPDDIEQLKMLGFANI-NLYGSSDYSQVEFNVHRPALQDKRVRQALIYGLERQKLIDVVYQGYGKVAIEPIAPISWAFNAEGVNPY-PYDPAQAKKLL 392
                 7899*****99999999.*****************************************************9999999998888776.79********* PP

                 HHTT-BCSSTSCEETC.EEEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTTC CS
   SBP_bac_5 280 keaGykdgdggglrek.klkltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsssg 374
                 +eaG+k g +g + ++ +++ ++ll+s + +++a+  + ++++++iG+ ++ ++vd+ ++  +++k+g++d++ ++ + +  dp++ ++ f+ss +
  CTQ28462.1 393 DEAGWKAGADGIRAKDgQRLELTLLVSKKVLNDALIPIAKENWRQIGVLLKPQVVDF-NALMAQRKAGNYDLASFSTS-TLNDPHDGVWDFYSSEA 486
                 ********9877777799999999999999***************************.888899***********877.55888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 4534.85
//
Query:       CTQ28463.1  [L=319]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-42  143.7  17.4    5.1e-42  143.7   9.7    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.9    0.0011        20      26      64 ..       9     104 ..       2     110 .. 0.71
   2 !  143.7   9.7   2.8e-46   5.1e-42       1     184 [.     111     316 ..     111     317 .. 0.99

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0011
  BPD_transp_1  26 vllslPsfvlaillvlvf.........................................................vilsilghlilpviillllsa 64 
                   +l++lP+++la ++++++                                                          +++ l ++i+  ++l+ + +
    CTQ28463.1   9 LLQTLPMLLLASFIIFLLfaktpgdfidgnitltatraaelkaiygldqplltrylhwlgqllrgdlgfslqyqiPVSQLLNQYIWNSFLLASVAL 104
                   78999****999988766788999988888888888888888888888888888888888888888888888887444444444444444444443 PP

  == domain 2  score: 143.7 bits;  conditional E-value: 2.8e-46
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.......................vilsilghlilpviillllsaapyvrlirra 74 
                   g+ +G+++al++++++d+l+++ +++ +s+P+f l +ll+ +f                       ++l+++ hl+lpv++l++l+a+ ++r++r++
    CTQ28463.1 111 GLAVGVVSALRPGSWFDHLVSVAVFAAMSFPTFFLCLLLIKWFavdlhwlpvggmtntgsdesgwqYVLQVAAHLALPVLALVMLQAGSLTRYVRAS 207
                   7899********************************************************************************************* PP

  BPD_transp_1  75 alrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlv 171
                   +l+++ +d++++ara+G+ +++++ k++l+nal piit+l++ ++gl+ ga+++e +++wpG g   ++++ ++dy+  + g +l+l++++++ nl+
    CTQ28463.1 208 MLDVVKMDFIRTARAKGLQERTVILKHALRNALLPIITLLGFELPGLFSGAIITEKVFNWPGAGHIHIDSLAARDYPVLM-GFTLFLAVLTIVGNLL 303
                   ********************************************************************************.**************** PP

  BPD_transp_1 172 adilqrlldprvr 184
                   ad+l+++ dpr+r
    CTQ28463.1 304 ADVLYAWADPRIR 316
                   ***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2344.88
//
Query:       CTQ28464.1  [L=316]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-27   94.9   6.5      1e-26   93.8   6.5    1.5  1  BPD_transp_1  Binding-protein-dependent transport system inne
    3.5e-13   49.3   0.7    3.5e-13   49.3   0.7    3.3  4  OppC_N        N-terminal TM domain of oligopeptide transport 
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.041   14.1   0.0    1.8  1  DUF4731       Domain of unknown function (DUF4731)
      0.058   13.8   4.1       0.25   11.8   4.1    2.1  1  BatA          Aerotolerance regulator N-terminal
        1.7    8.4   5.5        7.3    6.3   0.0    2.8  3  EMC3_TMCO1    Integral membrane protein EMC3/TMCO1-like


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   6.5   2.9e-30     1e-26       1     184 [.     120     312 ..     120     313 .. 0.95

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 2.9e-30
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp..viillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   g+llG+l++ + ++ +dkl++++ ++++++P + l+i+  ++++ l+   ++ ++  v++l+ll ++ ++rl+r + l+ +++d++ a  +lG+s +
    CTQ28464.1 120 GYLLGALSG-YVGGLTDKLIMRVADLVMTIPGLPLLIVAGAMLSELDFSPDSRIYmvVVMLSLLEWPRLARLVRGQCLSLRERDFMLATQVLGLSAR 215
                   789******.****************************99999666666655544358999************************************ PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis............nggvlalviavlllnlvadilqrlld 180
                   ++++ ++lPn++p ++  + +a+++++   ++l++lg    lg +  ++++g+++++++            + + +a+ i v+++n++ d l ++ d
    CTQ28464.1 216 HRLFGHLLPNTIPILVVMATMAVANAILSESALSYLG----LGVVPPTPSWGNMMDAANslidfqrrpwlwMPPGIAIFITVIAINVLGDGLRDAMD 308
                   *************************************....******************************************************** PP

  BPD_transp_1 181 prvr 184
                   p ++
    CTQ28464.1 309 PNMK 312
                   *986 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.7   9.6e-17   3.5e-13       1      51 []      27      79 ..      27      79 .. 0.88
   2 ?   -2.6   0.5       1.5   5.5e+03      18      32 ..     104     118 ..     102     125 .. 0.69
   3 ?   -1.0   0.0       0.5   1.8e+03      22      37 ..     229     244 ..     229     271 .. 0.76
   4 ?    0.2   0.0      0.21   7.5e+02      19      36 ..     286     303 ..     286     313 .. 0.62

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 9.6e-17
      OppC_N  1 slwqdawrrFkrNklAvvglvilllllliaifaPliaPydp..qdliqn....llpP 51
                s+w++ wr+++rN+lA++ l +l+++++ ++++P+++P++   +    +    ++pP
  CTQ28464.1 27 SPWRQGWRQLRRNRLAMFCLLLLAVMAVWCVLGPVWSPWSDdaT----DalsiNQPP 79
                8*************************************974433....24556**99 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
      OppC_N  18 vglvilllllliaif 32 
                 ++lvi ll  ++++ 
  CTQ28464.1 104 ISLVIGLLTMVMSVC 118
                 788888887777765 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.5
      OppC_N  22 illlllliaifaPlia 37 
                 il++++ +a+ +  ++
  CTQ28464.1 229 ILVVMATMAVANAILS 244
                 7888888888776664 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.21
      OppC_N  19 glvilllllliaifaPli 36 
                 g +i++++++i ++++ +
  CTQ28464.1 286 GIAIFITVIAINVLGDGL 303
                 567788888777877777 PP

>> DUF4731  Domain of unknown function (DUF4731)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.1e-05     0.041       8      70 ..      62     129 ..      59     131 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
     DUF4731   8 YsrWdessrDevsvaavssteeasslk....risrkl.ctGklgialkvlggvalfwvvfilGYvtGy 70 
                 +s W ++ +D +s++++ ++e+ ++ +     ++++l ++G++++ + +l+ v  +   ++lG ++Gy
  CTQ28464.1  62 WSPWSDDATDALSINQPPGAEHWLGTDflgrDVYTRLlLAGRISLVIGLLTMVMSVCLGYLLGALSGY 129
                 588*****************99988752222577775269*************99999*********9 PP

>> BatA  Aerotolerance regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   4.1   6.9e-05      0.25      20      72 ..       2      54 ..       1      58 [. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
        BatA 20 iillyllkrrpqev.vfsslrlleevekdeea.lqrlkknllllLrllalallvl 72
                +il yl  rr+q++  +++l+ +  ++  +++ +++l++n l +  ll+la++++
  CTQ28464.1  2 MILSYLASRRRQRQaAIPALAHI--TPSPWRQgWRQLRRNRLAMFCLLLLAVMAV 54
                566777777776666********..777788888888888887777777777665 PP

>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.4      0.66   2.4e+03     117     133 ..     144     161 ..     105     182 .. 0.47
   2 ?    4.3   0.2    0.0085        30      13      34 ..     226     247 ..     217     252 .. 0.82
   3 ?    6.3   0.0     0.002       7.3       1      44 [.     270     311 ..     270     316 .] 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.66
  EMC3_TMCO1 117 vvaklp.fpltgrfksll 133
                  v+++p +pl++    +l
  CTQ28464.1 144 LVMTIPgLPLLIVAGAML 161
                 234444444444444444 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0085
  EMC3_TMCO1  13 llPivivillvgiltgllsell 34 
                  +Pi++v+  +++++++lse  
  CTQ28464.1 226 TIPILVVMATMAVANAILSESA 247
                 69****************9865 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.002
  EMC3_TMCO1   1 dlvldplirdwvllPivivillvgiltgllsellqkllidkkkm 44 
                 ++++d++ r+w+ +P  i i+++ i+  +l   l+   +d + m
  CTQ28464.1 270 NSLIDFQRRPWLWMPPGIAIFITVIAINVLGDGLRDA-MDPN-M 311
                 5789**************************9999985.5666.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2343.50
//
Query:       CTQ28465.1  [L=326]
Description: D-ala-D-ala transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-28  100.5   0.0    1.4e-28  100.1   0.0    1.2  1  ABC_tran         ABC transporter
    1.9e-19   69.9   0.2    3.6e-19   69.0   0.2    1.5  1  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
    0.00012   21.7   0.3     0.0018   17.7   0.3    2.0  1  SMC_N            RecF/RecN/SMC N terminal domain
     0.0015   18.8   0.2      0.015   15.6   0.2    2.1  1  AAA_22           AAA domain
     0.0023   17.3   0.1      0.056   12.8   0.1    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0029   17.5   0.0      0.015   15.1   0.0    1.9  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
  ------ inclusion threshold ------
      0.022   15.1   0.2      0.042   14.2   0.2    1.7  1  AAA_16           AAA ATPase domain
       0.03   14.1   0.1       0.22   11.2   0.0    2.1  2  IstB_IS21        IstB-like ATP binding protein
      0.035   13.6   0.0      0.063   12.8   0.0    1.3  1  AAA_7            P-loop containing dynein motor region
      0.048   13.3   0.6      0.056   13.1   0.5    1.4  1  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
      0.056   13.2   0.5       0.31   10.7   0.0    2.0  2  Sigma54_activat  Sigma-54 interaction domain
      0.087   13.2   0.1        0.2   12.1   0.0    1.6  2  AAA              ATPase family associated with various cellul
       0.19   11.5   0.0       0.34   10.7   0.0    1.4  1  AAA_29           P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.0     1e-31   1.4e-28       2     136 ..      26     184 ..      25     185 .. 0.94

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 1e-31
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH.......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx.......... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp.....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren.......... 79 
                 ++vs+++++g++v++vGe+G+GKS  +++l+gll p     + Gei++ ++dl +    q      +++++++qe  + l+p lt++e+          
  CTQ28465.1  26 QEVSFTIQAGQTVGVVGESGCGKSVTAMALMGLLPPqtariDGGEIRFADRDLLRlkarQMADLRGHQLAMIFQEpmSALNPVLTIGEQlceppirhlg 124
                 78**********************************88888889999999999999997778888899*******9999******************** PP

                 ....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                     ++  ++ ++ls++gl    d+ +++ p++LSgG+ qrv++a+al ++pkll++DEpt
  CTQ28465.1 125 atpkAAWHQAIQLLSEVGLAR-GDSLMTRYPHQLSGGMLQRVMIAMALSCRPKLLIADEPT 184
                 **9999999**********99.888889999*****************************9 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.2   2.6e-22   3.6e-19       1      65 []     236     300 ..     236     300 .. 0.99

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 2.6e-22
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekdklekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE+g +++++++p+HPYT++L++s p + +++++l++i+g++p+l +l++GC Fa RC+ a++ C
  CTQ28465.1 236 VEQGATAEVLRHPQHPYTRGLIASRPVPGERRRRLYSIPGQVPDLAALPAGCAFAGRCERATARC 300
                 8**************************************************************99 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.3   1.3e-06    0.0018      29     212 ..      40     230 ..      20     237 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-06
                 EEESTTSSHHHHHHHHHHHCTT.TTT....TTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  29 ivGpNGSGKsnlldAilFvLGersak....klrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkev 123
                 +vG+ G+GKs    A++ +L  ++a+    ++r ++ + l  k ++ a +   +++++f+++ ++    ++ ++i  ++ +    ++     ++  ++ 
  CTQ28465.1  40 VVGESGCGKSVTAMALMGLLPPQTARidggEIRFADRDLLRLKARQMADLRGHQLAMIFQEPMSA---LNPVLTIGEQLCEPPI-RHLGATPKAAWHQA 134
                 66777777776666666666665554333345555554444445566666666666666666665...5566666666665555.33333444445556 PP

                 HHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE..EEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf..ivislreemlekadklvgv 211
                  +ll+++g+ +          +LSgG  + v++a+ ++   ++p+ l + De   aLD +  +++ +ll+ +   +Q+  + i+++ ++++++ + v v
  CTQ28465.1 135 IQLLSEVGLARGdslmtryphQLSGGMLQRVMIAMALS---CRPK-LLIADEPTTALDVTVQAQILRLLRDRARASQMamMLITHDLGVIAQMAEQVVV 229
                 667777777776888888888*****999999998865...6676.7789********************99888885338899999999998666555 PP

                 E CS
                 x RF
       SMC_N 212 t 212
                 +
  CTQ28465.1 230 M 230
                 4 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   1.1e-05     0.015      10     128 ..      40     213 ..      33     220 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.1e-05
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee......erpevvfvtlpsstsskdllrellralglelka................................ 70 
                 v+GesG+GK++++  l+  l+ + +  +      +++++++ ++ +  +++    +l+ +++++ +a                                
  CTQ28465.1  40 VVGESGCGKSVTAMALMGLLPPQTARIDggeirfADRDLLRLKARQMADLRGH--QLAMIFQEPMSAlnpvltigeqlceppirhlgatpkaawhqaiq 136
                 89****************99877666669999996666666666666544443..33333333333344466666666666666777777777777777 PP

      AAA_22  71 .................erlsseell.ealeqalraravielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                                  + + s  +l + +   + +++  +lli DE    l+   ++++l+ Lr+++    +++++ L+
  CTQ28465.1 137 llsevglargdslmtryPHQLSGGMLqRVMIAMALSCRP-KLLIADEPTTaLDvtvQAQILRLLRDRAR--ASQMAMMLI 213
                 777777778888876643333333333444444455555.99999999998988666999999999999..777777665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   4.1e-05     0.056      20      51 ..      33      64 ..      16      71 .. 0.81
   2 ?    2.0   0.0     0.082   1.1e+02     177     199 ..     149     171 ..     140     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-05
  Mg_chelatase 20 aGgHnlllvGppGsGKtmlakrlpsllpplse 51
                    g  + +vG +G+GK++ a +l++llpp + 
    CTQ28465.1 33 QAGQTVGVVGESGCGKSVTAMALMGLLPPQTA 64
                  555677789*******************9875 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.082
  Mg_chelatase 177 eierYlsklsgplldRidlqvev 199
                    ++rY ++lsg +l R+ + +++
    CTQ28465.1 149 LMTRYPHQLSGGMLQRVMIAMAL 171
                   5789*************998876 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.48   6.6e+02       3      22 ..      39      58 ..      38      90 .. 0.70
   2 !   15.1   0.0   1.1e-05     0.015     233     302 ..     153     220 ..     139     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.48
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                +++G  g+GKS    al +l
  CTQ28465.1 39 GVVGESGCGKSVTAMALMGL 58
                689********988888666 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.1e-05
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv..iltTHSplll 302
                  +++lS G+++   ++++ l+ ++  +ll+ DEp + L+  +++ +l+ll++ +r  +Q   +l TH+  ++
  CTQ28465.1 153 YPHQLSGGMLQR-VMIAMALSCRP--KLLIADEPTTALDVTVQAQILRLLRDRAR-ASQMamMLITHDLGVI 220
                 57899****999.66666666666..79**********************55555.4665559999998776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   3.1e-05     0.042      19      55 ..      32      73 ..      15     271 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-05
      AAA_16 19 vrsgrpelvllsGesGvGKsslvrellralekd.......ggif 55
                + +g  + v ++GesG+GKs  + +l+  l  +       ++ f
  CTQ28465.1 32 IQAG--QTVGVVGESGCGKSVTAMALMGLLPPQtaridggEIRF 73
                4444..67999**************9987777755555432333 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00016      0.22      32      67 ..      19      55 ..       9      95 .. 0.81
   2 ?    0.5   0.0      0.31   4.3e+02     104     141 ..     170     206 ..     128     227 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
   IstB_IS21 32 krkvkeLatlsf.iekkenivllGpsGvGKshlaial 67
                + +v+++++ sf i++ + + ++G sG GKs  a+al
  CTQ28465.1 19 RSRVRAVQEVSFtIQAGQTVGVVGESGCGKSVTAMAL 55
                5678888889985688999****************98 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.31
   IstB_IS21 104 krllkvdllilDdlgllpldqaeaellfeviekryerr 141
                 +   +++lli D+   + ld   ++++++++ +r   +
  CTQ28465.1 170 ALSCRPKLLIADEPT-TALDVTVQAQILRLLRDRARAS 206
                 445678899999864.5678888888888888775443 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.5e-05     0.063      26      61 ..      28      63 ..       7      69 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.5e-05
       AAA_7 26 lelllknkkpvllvGptGtGKtviikdllkkldkek 61
                ++  +++++ v +vG++G+GK+v+++ l+  l++++
  CTQ28465.1 28 VSFTIQAGQTVGVVGESGCGKSVTAMALMGLLPPQT 63
                56678999******************9999888765 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.5   4.1e-05     0.056       7      35 ..      28      56 ..      22     187 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.1e-05
                 HHS-EBTT-EEEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  7 alfpivqGqrtlipgafgvGktvisqsls 35
                 + f+i  Gq+++++g++g+Gk+v + +l+
   CTQ28465.1 28 VSFTIQAGQTVGVVGESGCGKSVTAMALM 56
                 5699*******************987765 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00023      0.31       9      43 ..      22      56 ..      15      68 .. 0.82
   2 ?    0.3   0.1      0.36     5e+02     103     122 ..     185     204 ..     176     234 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
                     HHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHH CS
  Sigma54_activat  9 kelleqikkvaktdlsvlitGesGtGKellaraih 43
                      +++++++ +++   +v ++GesG+GK++ a a+ 
       CTQ28465.1 22 VRAVQEVSFTIQAGQTVGVVGESGCGKSVTAMALM 56
                     466788888899999****************9875 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.36
                      GGS-HHHHHHHHHHHHHSEE CS
  Sigma54_activat 103 gelplelQekLlrvlqegev 122
                      + l++++Q+++lr+l ++  
       CTQ28465.1 185 TALDVTVQAQILRLLRDRAR 204
                      568999********998765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014       0.2       3      52 ..      40     100 ..      38     114 .. 0.72
   2 ?   -2.9   0.1       6.1   8.4e+03      84     111 ..     190     216 ..     181     227 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
                 EESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SS..........STTHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakelgvefleisgsell.sk..........yvgesekkirelfke 52 
                 ++G  G+GK+ +a a++  l  +  +i+g e++  +          +   + ++++++f+e
  CTQ28465.1  40 VVGESGCGKSVTAMALMGLLPPQTARIDGGEIRfADrdllrlkarqMADLRGHQLAMIFQE 100
                 78******************99999999998884335555555555556666666666665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.1
                 HHHHHHHHHHHHTTTSSSTEEEEEEESS CS
         AAA  84 rvvnqLlteldgvkkkeskvivigatnr 111
                 +v++q+l+ l +  +  s++ ++++t++
  CTQ28465.1 190 TVQAQILRLLRDRARA-SQMAMMLITHD 216
                 6778888888777775.44666666665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00024      0.34      16      50 ..      29      63 ..      23      67 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00024
      AAA_29 16 tieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                +++i+  +++ ++G+sG GKS    A++ lL p++
  CTQ28465.1 29 SFTIQAGQTVGVVGESGCGKSVTAMALMGLLPPQT 63
                566664448889*********88889999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2201.70
//
Query:       CTQ28466.1  [L=323]
Description: oligopeptide transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-27   96.8   0.0    1.9e-27   96.4   0.0    1.1  1  ABC_tran   ABC transporter
    2.6e-19   69.5   0.9    4.2e-19   68.8   0.9    1.3  1  oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal reg
    3.2e-07   30.5   1.4     0.0019   18.0   0.0    2.7  3  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
     0.0023   18.2   0.6      0.011   16.0   0.6    2.0  1  AAA_22     AAA domain
     0.0036   17.7   0.0     0.0053   17.2   0.0    1.4  1  AAA_16     AAA ATPase domain
  ------ inclusion threshold ------
       0.09   12.5   0.2       0.17   11.6   0.2    1.4  1  AAA_29     P-loop containing region of AAA domain
        0.2   11.4   0.0       0.27   11.0   0.0    1.2  1  PRK        Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.0   7.5e-31   1.9e-27       2     136 ..      34     184 ..      33     185 .. 0.91

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 7.5e-31
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH...........HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx...........xxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren...........esdee 84 
                 + vs+++++g++ ++vGe+G+GK+t+ ++l+gl+++ +G++++ g++l +     l+  r +++ ++q+  ++l+p+l++++            +++e 
  CTQ28466.1  34 DGVSFNIRPGTIFGLVGESGSGKTTVGRTLLGLYEKSAGSVKFHGQELADltaPALRAIRPRMQLVFQDpySSLNPRLRIGDAigeamlehklcARNEL 132
                 78***********************************************9999999*************999**************9999999855555 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  +++++ +++ +l+ ++  + p+++SgGq+qr+ +aral+ +p+++++DEp 
  CTQ28466.1 133 YDRVIDVMKICGLAPEHYARFPHQFSGGQRQRIGIARALILNPDFIVADEPI 184
                 6677777777777777777889*****************************7 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.9   1.6e-22   4.2e-19       1      65 []     236     300 ..     236     300 .. 0.99

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 1.6e-22
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekdklekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE +++++lf++plHPYT+aL+++vp ld++ ++ + ++ge p++ + ++GC+F++RCp a e C
  CTQ28466.1 236 VESASRDALFSRPLHPYTRALMAAVPTLDPHSEPQALVQGEIPDPANPPAGCRFSSRCPLACERC 300
                 8**************************************************************99 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.3   0.00017      0.43       1      23 [.      45      67 ..      45     117 .. 0.83
   2 ?   -0.4   0.0      0.32   8.1e+02     254     281 ..      91     120 ..      79     132 .. 0.66
   3 !   18.0   0.0   7.5e-07    0.0019     235     302 ..     155     220 ..     151     221 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00017
      AAA_21  1 lnvliGpNgsGKSnLLdaldlla 23
                + +l+G  gsGK+++ ++l +l 
  CTQ28466.1 45 IFGLVGESGSGKTTVGRTLLGLY 67
                578****************9984 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.32
      AAA_21 254 alkkgsllliDEpEngLHPkll..rrllel 281
                 a  ++  l++ +p ++L+P+l     + e 
  CTQ28466.1  91 AIRPRMQLVFQDPYSSLNPRLRigDAIGEA 120
                 55554558999********88755555555 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 7.5e-07
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                 +++S G+++ ++++ al+  +   ++++ DEp + L+ ++++ ++ l+++l++ +g+ +++ +H+  ++
  CTQ28466.1 155 HQFSGGQRQRIGIARALILNP---DFIVADEPISALDVSIQAQIINLFSDLRDnRGVTFLFISHDLGVV 220
                 688999999988888888888...99**********************9999999*********98776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.6   4.3e-06     0.011       7      49 ..      45      88 ..      40     220 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.3e-06
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaee...erpevvfvtlps 49
                i  ++GesG+GKTt+ r+ll  +++ a       ++ e++  t+p+
  CTQ28466.1 45 IFGLVGESGSGKTTVGRTLLGLYEKSAG--SvkfHGQELADLTAPA 88
                55689***************99964333..1335444444444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.1e-06    0.0053      26      92 ..      45     106 ..      29     245 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.1e-06
      AAA_16  26 lvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesa 92 
                 +  l+GesG+GK+++ r+ll  +ek+ +  ++ + ++l   + + a  ++a+ r   ++ + +++ s+
  CTQ28466.1  45 IFGLVGESGSGKTTVGRTLLGLYEKS-AGSVKFHGQEL---ADLTApALRAI-R-PRMQLVFQDPYSS 106
                 56699***************888888.77788888888...55544488888.6.7777777774442 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   6.7e-05      0.17      13      38 ..      34      59 ..      31      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.7e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTl 38
                dg +++i++  ++ l+G+sGsGK+T+
  CTQ28466.1 34 DGVSFNIRPGTIFGLVGESGSGKTTV 59
                67788898877999**********96 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001      0.27       1      24 [.      45      68 ..      45     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
         PRK  1 vIgvagsSGaGkttvarklekifg 24
                + g+ g+SG+Gkttv r+l  + +
  CTQ28466.1 45 IFGLVGESGSGKTTVGRTLLGLYE 68
                56999************9976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2338.24
//
Query:       CTQ28467.1  [L=175]
Description: putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0002   21.4   0.1    0.00038   20.5   0.1    1.5  1  RcnB      Nickel/cobalt transporter regulator
     0.0014   18.5   0.0      0.002   18.0   0.0    1.2  1  DUF1236   Protein of unknown function (DUF1236)
  ------ inclusion threshold ------
      0.094   12.5  20.4       0.21   11.3  20.4    1.6  1  Collagen  Collagen triple helix repeat (20 copies)


Domain annotation for each model (and alignments):
>> RcnB  Nickel/cobalt transporter regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   6.3e-08   0.00038      27      50 ..     144     167 ..     139     168 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 6.3e-08
        RcnB  27 prGyrWvriggdyvLvaiatGvIa 50 
                 ++Gy+W+ +g+d vLva  t +++
  CTQ28467.1 144 YPGYEWRAVGDDLVLVALSTAIVT 167
                 79*****************99986 PP

>> DUF1236  Protein of unknown function (DUF1236)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.3e-07     0.002      14      64 ..     115     170 ..     105     171 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.3e-07
     DUF1236  14 eeevsvGaalPetVelrpvPdevv.i.p...eyrYvvvndrtviVdpqtrriVevi 64 
                  ++v++G++lP  ++ +++P+ ++ + p   +y++  v d  v+V  +t  + +vi
  CTQ28467.1 115 AKNVARGKPLPPGIAKKTLPASMInDlPyypGYEWRAVGDDLVLVALSTAIVTAVI 170
                 589*******************99877799***************99987777666 PP

>> Collagen  Collagen triple helix repeat (20 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  20.4   3.6e-05      0.21      13      41 ..      37      65 ..      27      83 .. 0.44

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.6e-05
                XXXXXX-----XXXXEEEE-TTSS----- CS
    Collagen 13 GppGkrGepGeaGekGekGpaGekGppGa 41
                G++G++G++G++G++G++G++G++G++G+
  CTQ28467.1 37 GNHGNSGNHGNSGNHGNNGNSGDHGNKGQ 65
                22222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1323.89
//
Query:       CTQ28468.1  [L=143]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-10   40.0   0.1    4.9e-10   39.6   0.1    1.2  1  DinB      DinB family
    2.4e-08   34.5   0.5      3e-08   34.2   0.5    1.1  1  DinB_2    DinB superfamily


Domain annotation for each model (and alignments):
>> DinB  DinB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1   5.5e-14   4.9e-10       4     144 ..       3     141 ..       1     143 [] 0.88

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 5.5e-14
                 X-...HHHHHHHHHHHHHHHHHCT--CCCTT--SSTTS--HHHHHHHHHHHHHHHHHHHHH..SSSGGGT---------HHHHHHHHHHHHHHHHCT-- CS
        DinB   4 ktlleellqynqwardrtldaiaaLpdeelkaengegfqsvkqtlnHvldveelwlsrlegeegapavddqterkeleeldalrealderliafldqlt 102
                 k+++++ll+y++w +  tl+ai+a++    +   ge+ +   ++ nH+  v+ +++++l g     +     e+ ++ el+++  a+++++i+  ++ t
  CTQ28468.1   3 KDTVVTLLKYKRWIDFATLQAIRAIDG-TVH---GEKRHLTIRLMNHIHVVDMIFRANLRGRPHGYTALNTPETPTVDELETAMTACTDKYIQYVSAMT 97 
                 5566799******************74.555...799999999******************777778888889999999***********999988776 PP

                 H..HHHHSEE------SS-EEHHHHHHHHHHHHHHHHHHHHHHH CS
        DinB 103 d..leretlldradagtvkmtlaelLaHvinHethHrGqitvll 144
                      +++  ++ d+g++ mt  e+L H+  H+ +HrG++  ++
  CTQ28468.1  98 PadFHERIAFKFVDGGDGNMTAMEMLNHMLFHGAYHRGAVGWMI 141
                 5448888889******************************9997 PP

>> DinB_2  DinB superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.5   3.4e-12     3e-08      35     126 ..      42     135 ..      32     137 .. 0.96

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 3.4e-12
      DinB_2  35 llaHlgnveelllerlrgeeaprpgldpltppsaaealaylaevrarllallealtdadldrpltap..hpglgkltlgdvllfvlqHeqhHle 126
                 l+ H+  v +++ + lrg+++  ++l+  + p+++e+  ++ ++ +  ++ ++a+t+ad+++++ +   + g g +t+ ++l+++l H ++H++
  CTQ28468.1  42 LMNHIHVVDMIFRANLRGRPHGYTALNTPETPTVDELETAMTACTDKYIQYVSAMTPADFHERIAFKfvDGGDGNMTAMEMLNHMLFHGAYHRG 135
                 678*****************99**********************************************9999********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1134.76
//
Query:       CTQ28469.1  [L=94]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.17   12.0   0.0        3.2    7.9   0.0    2.0  2  Condensin2nSMC  Condensin II non structural maintenance of ch


Domain annotation for each model (and alignments):
>> Condensin2nSMC  Condensin II non structural maintenance of chromosomes subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.01   1.8e+02     110     125 ..      13      28 ..      10      32 .. 0.89
   2 ?    7.9   0.0   0.00018       3.2      96     127 ..      40      71 ..      29      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.01
  Condensin2nSMC 110 veemlvrlyepilwrs 125
                     +e++l+  ++p lw+s
      CTQ28469.1  13 LETVLMATLDPDLWKS 28 
                     78999*********97 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00018
  Condensin2nSMC  96 kvLsafhskkkekeveemlvrlyepilwrsLk 127
                      +++ f  k  e++v e+lvr + p +w +L+
      CTQ28469.1  40 ALMELFNVKPAENAVAELLVRGMTPYIWAYLS 71 
                     5677788888999***************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 775.14
//
Query:       CTQ28470.1  [L=75]
Description: hypothetical protein CH1034_230144 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 638.09
//
Query:       CTQ28471.1  [L=510]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-42  143.2  53.3    9.1e-42  143.2  53.3    2.4  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        0.2   10.8   0.4       0.28   10.3   0.4    1.2  1  PMD       Plant mobile domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2  53.3     1e-45   9.1e-42       1     351 [.      20     410 ..      20     412 .. 0.88
   2 ?   -0.2   1.8     0.042   3.8e+02     123     167 ..     471     491 ..     410     507 .. 0.50

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 1e-45
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 +++aa+l  l+++   ++ p a++++lg sp+++++l+ +++l+++ + l +G+ +d + r+r++++g++lf+l++ll++++++l+l  vlr+lqGl+a
  CTQ28471.1  20 VFMAALLLPLSFTGGVMTTP-AIQQSLGGSPAALSWLTNGFMLTFGSFLLAAGVAADAIDRKRIFIAGAALFCLSSLLFCLTHNLFLSGVLRALQGLAA 117
                 68899999999999888888.******************************************************55555579*99************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 ++++++g a++a+++ + +r+ra+++l++ f++G ++gpll g++++++gWr+v+ ++a++s+ +++++l+ lp+++++++r ++   +          
  CTQ28471.1 118 AMILASGSAALAQLYDGAQRTRAFSILGTVFGVGLAFGPLLIGFMIDAVGWRGVYALFALLSAGVLLIGLVSLPATEKSEPRTPDNLGLtlftlalmlf 216
                 *****************************************************************9997788877777777776655559********* PP

       MFS_1 189 ..................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllall 253
                                                    ++++ p+++ +++l++++++  +l+  + +++++  ll+ +pl ++   g+s   +++l+l++l
  CTQ28471.1 217 taslmvipargflslttlalliasgglfvafvvrCRRVNNPVLE-LSLLRHPRFVG-VLLLPVATCCCYVVLLIIVPLHFMGGEGMS-ESQSALYLMAL 312
                 ****************************9999999999999999.9*******886.7777777788***********99*******.78888888888 PP

       MFS_1 254 alvgailallagrlsdrlgrrrrlllallllllaalglallavt...ssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslgg 349
                  + ++++  +a+ l + +++     ++ ++l++a++gl+ll+ +   ++ + l+l+l+l+G g+++ ++++  la + +p  +ag+a+glfnt++ +g 
  CTQ28471.1 313 TAPMLVFPSVAALLTRWFSP---GQVSTAGLMMASIGLLLLGDAfhsNHLPQLVLALILCGAGAALPWGLMDGLAISAVPVAKAGMAAGLFNTVRVAGE 408
                 88887776666666666665...666666666666666666666544777777779999***********************************98887 PP

       MFS_1 350 al 351
                  +
  CTQ28471.1 409 GI 410
                 66 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.042
       MFS_1 123 igllsagfslGailgpllggllasslgWravfyilaivsllafvl 167
                  +                         ++++f  la+v+ll++++
  CTQ28471.1 471 DSA------------------------YTLLFSGLAVVTLLCALM 491
                 222........................333333333333333332 PP

>> PMD  Plant mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4   3.1e-05      0.28     115     161 ..      89     134 ..      36     145 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.1e-05
         PMD 115 llwlskfvfptksgnkvkeevlplaedlarggkiAlapavLAslYrd 161
                 l+ ls+++f+ +++  ++  vl  +  la++  +A ++a+LA lY  
  CTQ28471.1  89 LFCLSSLLFCLTHNLFLS-GVLRALQGLAAAMILASGSAALAQLYDG 134
                 4679******99999999.**************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 3746.38
//
Query:       CTQ28472.1  [L=305]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-51  172.4   0.5    9.7e-51  172.1   0.5    1.1  1  LysR_substrate  LysR substrate binding domain
    5.8e-17   61.4   2.2    5.8e-17   61.4   2.2    2.7  3  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.068   13.1   0.4       0.22   11.5   0.1    2.0  2  MarR_2          MarR family
       0.14   12.0   0.2       0.39   10.6   0.2    1.8  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.1   0.5   2.2e-54   9.7e-51       3     206 ..      89     291 ..      87     293 .. 0.94

  Alignments for each domain:
  == domain 1  score: 172.1 bits;  conditional E-value: 2.2e-54
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSE CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gepv 96 
                     +++g+Lri+ p +++ +ll p+l +f ++yP+vel+l  +d  +l++l++eg +D+air+g+++ds+l+ar+L+  ++vl+asp++ La+ g p 
      CTQ28472.1  89 QPTGKLRISLP-VIGYRLLLPALTAFSRLYPQVELDLDFSD--RLVNLIDEG-VDVAIRSGELADSRLIARKLGGFRFVLCASPAY-LAEyGVPG 178
                     799********.66***************************..*********.*********************************.***99999 PP

                     CGGGGCTSEEEEESTTST.HHHHHHHHHHCT..TEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEE CS
  LysR_substrate  97 sledLadeplilleegsg.lrdlledalrea..glkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvy 187
                     s+++La +++i+++ +++ l + +e    +    +++ ++++vn++ea+++l aaG+Gia++p+++vr+++++g+l+  +lp++ ++  ++++++
      CTQ28472.1 179 SPAELAAHKCIFFRFPATgLIQPWELRGMRLtgDFRAAAVMTVNNIEAAIRLSAAGMGIAYVPDFVVREAMDEGQLQ-EVLPGCCVKdGHFSVLW 272
                     *************977777555555555555559999****************************************.***************** PP

                     ETTCCCHHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflre 206
                     +++r+lsp++r fidf+++
      CTQ28472.1 273 PASRYLSPRIRCFIDFIAA 291
                     ****************976 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   2.2   1.3e-20   5.8e-17       2      59 ..       5      62 ..       4      63 .. 0.96
   2 ?    0.0   0.1      0.19   8.4e+02      30      51 ..      72      93 ..      70      98 .. 0.76
   3 ?   -3.4   0.0       2.2     1e+04      13      20 ..     210     217 ..     208     218 .. 0.87

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 1.3e-20
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                  l  fv  ae+ sf +AA+ Lg+s +av + ++rLE+ lgv+Lf+R++r+++LT++G
  CTQ28472.1  5 TSLTSFVRTAETLSFVQAARLLGISASAVGKNVARLEHKLGVRLFNRSTRNVSLTAEG 62
                56899****************************************************9 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.19
                HHHHHHHHHHHHTS-SEEESSS CS
       HTH_1 30 vsrqikrLEeelgvpLfeRtgr 51
                +  qi++ E+el   L + tg+
  CTQ28472.1 72 ILEQIQEAESELTSSLSQPTGK 93
                6679********9999888655 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.2
                 HSSHHHHH CS
       HTH_1  13 egsftrAA 20 
                 +g f++AA
  CTQ28472.1 210 TGDFRAAA 217
                 79999999 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   4.8e-05      0.22      14      46 ..      11      41 ..       7      43 .. 0.87
   2 ?   -2.9   0.0       1.5   6.8e+03      22      36 ..     219     233 ..     214     235 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.8e-05
                HHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHH CS
      MarR_2 14 LgrrpgrdltvgelarrlglsksavsrilkrLv 46
                ++ ++   l+  + ar lg+s sav + ++rL+
  CTQ28472.1 11 VRTAET--LSFVQAARLLGISASAVGKNVARLE 41
                566666..8999********************8 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.5
                 EEHHHHHHHHTSSHH CS
      MarR_2  22 ltvgelarrlglsks 36 
                 +tv+ ++++ +ls +
  CTQ28472.1 219 MTVNNIEAAIRLSAA 233
                 477777777777655 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   8.7e-05      0.39      18      42 .]      17      41 ..      12      41 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.7e-05
  HTH_AsnC-type 18 isyaeLAervGlSestvlrRvrrLe 42
                   +s+ + A+ +G+S+s+v + v+rLe
     CTQ28472.1 17 LSFVQAARLLGISASAVGKNVARLE 41
                   699999*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2499.72
//
Query:       CTQ28473.1  [L=329]
Description: putative dioxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-19   69.6   0.0    6.3e-19   68.9   0.0    1.4  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    5.2e-19   68.6   0.0    8.4e-19   67.9   0.0    1.3  1  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   7.1e-23   6.3e-19       3     100 ..      35     129 ..      33     145 .. 0.90

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 7.1e-23
      DIOX_N   3 vidlsplsddedraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKeklakspsfrGysrlgeektdgkkldwkesfdlgtelp 100
                  idls++   ++++++aeql eA+ e+Gff+v+ hg+p ++i+++f++++ FF+lP+e+K+++   + + G+++ ++ + +++ +d+kes+++ ++l 
  CTQ28473.1  35 CIDLSNF--AARKNDIAEQLWEAAVEIGFFQVSHHGIPLADIRQAFSMTEAFFDLPDEVKRQYPLAG-NAGWESKAQVRPSTRTPDQKESYQITRPLM 129
                 69***88..9999**************************************************7765.789999999988889**********99865 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   9.4e-23   8.4e-19       5     100 ..     191     295 ..     187     296 .. 0.85

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 9.4e-23
                   EEEEEE-S---------EEEEEESSSEEEEEEE-.TT---EE..EE..TE.EEE----TTEEEEEE-HHHHHHTTS-S----EEE----GTGS...E CS
  2OG-FeII_Oxy   5 lvlnyypphpdpevilglgahtdaslltillqdd.vgglevf..kd..gk.wlrvppvdnslivniGdallflsngryksvlHrVlpvneger...R 92 
                   ++l+yy   ++    ++ gahtd  +lt+l+q +  ggl+v   kd  ++ w++++p +++++ niGd+l+ +s+ +++s++HrV++  + e    R
    CTQ28473.1 191 RMLHYYATEQSQQGMWRAGAHTDFDCLTLLFQRPgQGGLQVCpgKDreSQqWTSIEPREEVITCNIGDMLMRWSDDQLPSNFHRVRNPLPHEYqgqR 287
                   567887444444447**************************5445566556***********************************8888555677* PP

                   EEEEEEE- CS
  2OG-FeII_Oxy  93 vsiayfie 100
                   +s+a+f++
    CTQ28473.1 288 YSLAFFCQ 295
                   ******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2636.72
//
Query:       CTQ28474.1  [L=472]
Description: putative hydrolase protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-42  145.7   0.0    2.6e-42  145.4   0.0    1.1  1  Amidohydro_1  Amidohydrolase family
    1.5e-09   37.9   5.2    4.5e-08   33.0   2.8    2.5  2  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4   0.0   2.9e-46   2.6e-42       1     327 [.      55     414 ..      55     435 .. 0.87

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 2.9e-46
                   EEEE-EEEEEEECETTECSSS......GHHHHH..........STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH.....HHHHHHHHHHTSSSE CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrga......tledwl..........vppetaaealesgiktalksGtttvadmgattst.....giealleaaeelplg 76 
                   ++ P+ +++H Hl+qsll+g+       l  wl           +++t + a+++g++++l+sG+ +vad+++   +       e ++ + e+  lg
    CTQ28474.1  55 VIYPAWVNTHHHLFQSLLKGEpqglnqSLTAWLsatpyrfraaFDEHTFRLAVRIGLVELLRSGCASVADHNYLYWPdmpfdTSEIVFSEGEA--LG 149
                   589********************9999999999****************************************86667766555555555555..5* PP

                   EEEEEESSEGGS..............GCCCSHHHHHHHHHHHHHHHHHHCTTTCEE.EEEEECGTCCSHHH.HHHHHHHHHHHHTTEEEEEETSSCH CS
  Amidohydro_1  77 lrilggkvsldr..............gsaetskasreklkagaaetikgkadgvvk.valapheapafsde.elkealkeakkrdlpvaiHaletkg 157
                   +ri+++++  ++              ++++  +a +e+l+++     +++ ++ +  v +ap    +  +  +l+e++k+a++ ++ ++ H++et  
    CTQ28474.1 150 MRIVLCRGGATQgraveqdlpvalrpETFDGYMADVERLVSRY----HDPRPESLRrVVMAPTTVLHSAPGaQLREMAKLARQLGIRLHSHLSETVD 242
                   ******999999**************99**************9....66666666666666666665555338************************ PP

                   HHHHHHHHHTTTEEEETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCC CS
  Amidohydro_1 158 evedaeaafgetiehgthlevaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvkvglgtDgaasgns 254
                      +a+++f+     +t++ ++ + + l+   +++ah v l p+e++ll +   ++g+ahcp sn +l+sg+++l  + ++Gv v+lg+Dgaas+ +
    CTQ28474.1 243 YLDAARQKFA-----MTPVQFCAEHDWLGN-DVWFAHLVKLLPEEIALLGRT--GTGIAHCPQSNGRLGSGIADLLALEQAGVPVSLGVDGAASNEA 331
                   **********.....99*************.*********************..**************************************99999 PP

                   GGHHHH.........HHHHHHHHHHCCTT...TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTT CS
  Amidohydro_1 255 lnllee.........lrlalklqrgllye...deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvg 327
                   +++  e          r +++ q   + +   ++++  ++++++r+ + +gA++lgl+ + G+++vG +ADl++  ld  + ++g
    CTQ28474.1 332 ADMQSEahaawllqrARKGMLAQPRYAGGtfeGGADAATVEDVVRWGSAGGAQILGLA-QSGTLQVGMQADLAIYRLD-DPRYFG 414
                   9887777777777777777754444444489889999********************7.**************99652.344444 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0019        17       3      25 ..      49      71 ..      47      88 .. 0.86
   2 !   33.0   2.8   5.1e-12   4.5e-08     202     447 ..     148     408 ..      74     420 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0019
  Amidohydro_3  3 iDakGrlvlPGFvDsHtHlaggg 25
                  iDa+ ++ +P+ v  H Hl+   
    CTQ28474.1 49 IDARDCVIYPAWVNTHHHLFQSL 71
                  9*****************99876 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 5.1e-12
  Amidohydro_3 202 lplrvi.....ikelldaaerlglplspgseeltigavklfadgvl........gsrtalltepyftgwpdfedea.laelvaaadergldvaihai 284
                   l +r++      ++ +++ + l+  l     e+ +g ++  + +v         + r + ++    t++ +   +a l+e++++a++ g++++ h  
    CTQ28474.1 148 LGMRIVlcrggATQGRAVEQDLPVALR---PETFDGYMADVERLVSryhdprpeSLRRVVMAP---TTVLHSAPGAqLREMAKLARQLGIRLHSHLS 238
                   445555555555555555555555555...455555555555522222222222223333332...3333444444599999999988887766665 PP

  Amidohydro_3 285 gdaavd...dvldafeaa.....aekngnqdrrrlehaegvtesqiervaalqvaagvqpvfnfedelldsrlgperargstpvkellnagvkvalg 373
                   +  +vd   ++   f+++     ae  ++   +  +h   + +++i+ + + +  ++ +p++n        r     ++g++ + +l +agv+v+lg
    CTQ28474.1 239 E--TVDyldAARQKFAMTpvqfcAEHDWLGNDVWFAHLVKLLPEEIALLGRTGTGIAHCPQSNG-------R----LGSGIADLLALEQAGVPVSLG 322
                   4..4441112222233334444433333333234444444466666666666666666666655.......3....4677799************** PP

  Amidohydro_3 374 sD..apvgpfdpwprigaavmrktrrgg..........evlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvld.a 447
                    D  a  +  d  ++ +aa  ++ +r+g          ++ +     ++e++++  ++g+A++lgl +  GtL+vG++ADl++++ +
    CTQ28474.1 323 VDgaASNEAADMQSEAHAAWLLQRARKGmlaqpryaggTFEGGADAATVEDVVRWGSAGGAQILGLAQS-GTLQVGMQADLAIYRlD 408
                   ***9999999*********9999999999********99999999***********************9.**************954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3593.15
//
Query:       CTQ28475.1  [L=329]
Description: putative binding protein (ABC superfamily, peri_bind) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-24   86.4   0.0    3.8e-24   85.8   0.0    1.2  1  NMT1      NMT1/THI5 like
  ------ inclusion threshold ------
       0.18   11.8   0.0       0.36   10.8   0.0    1.4  1  DUF3875   Domain of unknown function, B. Theta Gene descripti


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.0   4.2e-28   3.8e-24       3     214 ..      43     245 ..      41     246 .. 0.90

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 4.2e-28
                 GGHHHHHHHHTTHHHHTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEEE-S- CS
        NMT1   3 nhaglyvAkekGYFkeeGldVeivepadpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqeplsglivlkdsgikspkDLkGkrigyvgs 101
                 +  g+y A++ G +k+ GldVei  ++++ + ++l+ s  ad+ + y  +ll   ++g+  +++aa +q  ++gl++++d  ++s++ Lk k++ ++  
  CTQ28475.1  43 EQGGYYQAQATGLYKKYGLDVEIRSGGPQVNGMQLLLSKRADVIIGYDLQLLEGIQRGFQAKAIAAPFQYDPQGLLTHAD--VTSLQGLKDKTLLVSS- 138
                 5679***************************************************************************9..************9999. PP

                 TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT-----SEEEEEEHHHHHH-HHHHHHHHH CS
        NMT1 102 pfekallkallakdggdpsdvtlvnvggtslakalltgkvDaaiggyenwegvelesegkelrifaladlgvpdyyslvlitnekllkenpelvkkFlr 200
                 + + +    l a++ ++ ++v    +  ++  ++++ + + a   +y   e++++++ g+++++f ++++g    y  +li+  ++++e++ + +kF+r
  CTQ28475.1 139 SGQATWWPWLKAQYQLSDAQVRP--Y-TFNI-QPFVVDDAVAQQ-AYVSSEVFQVQKAGVKANFFLFSEHGY-PPYGGILIARPDTIAERKAAMAKFVR 231
                 56677778888888887777777..4.4454.466666666665.67777*********************9.56778899****************** PP

                 HHHHHHHHHHHSHH CS
        NMT1 201 AlkkGyeyalahPe 214
                 A+ +G+   l++P+
  CTQ28475.1 232 ASMEGWVSYLKDPA 245
                 **********9995 PP

>> DUF3875  Domain of unknown function, B. Theta Gene description (DUF3875)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     4e-05      0.36      21      39 ..      77      95 ..      73      96 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4e-05
     DUF3875 21 civSkdaditvafevelPE 39
                 ++Sk ad+ +++ ++l E
  CTQ28475.1 77 LLLSKRADVIIGYDLQLLE 95
                699**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2922.71
//
Query:       CTQ28476.1  [L=299]
Description: Transcriptional regulator, LysR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-38  130.0   0.0      1e-37  129.5   0.0    1.1  1  LysR_substrate  LysR substrate binding domain
    4.4e-17   61.8   3.3    6.1e-17   61.3   0.5    2.5  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.16   11.6   0.1       0.41   10.3   0.1    1.6  1  HTH_50          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.0   1.7e-41     1e-37       3     204 ..      90     292 ..      88     296 .. 0.98

  Alignments for each domain:
  == domain 1  score: 129.5 bits;  conditional E-value: 1.7e-41
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvs 97 
                       rg++ri++++++ r+++  +l++ +++yP++++ l++ ++ ++ ++l +ge+D++i+++p+++++l++r +ae  + +v++ +hpLa +  v+
      CTQ28476.1  90 LRRGHVRIATIDAINRHFFSTMLKEVHKHYPNISFTLTTINNIHIQQALISGEADFGIMLNPQTSRELQVRAFAEMNMGIVVPTGHPLASRSAVR 184
                     689******************************************************************************************** PP

                     GGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTC CS
  LysR_substrate  98 ledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgr 191
                     ++++ d+p+il +++  + + +e++   +g +++ +  +n++++++ l++  +Gi++l r+ + de+++g+l ++pl +p+l+ ++l+l++ + r
      CTQ28476.1 185 FSQCLDYPFILPSAPLMISEPVEALVNISGNEVKEVAVSNNIHMIRTLIKEQMGIGILCRLDILDEIESGQLAFVPLTDPQLKpFTLALCVSPAR 279
                     ***********998888****************************************************************************** PP

                     CCHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidfl 204
                     +ls a+  ++++l
      CTQ28476.1 280 QLSLAASMMLNQL 292
                     *****99888876 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.5     1e-20   6.1e-17       4      60 .]       8      64 ..       5      64 .. 0.97
   2 ?   -0.2   0.1      0.16   9.7e+02      29      41 ..     284     296 ..     278     298 .. 0.82

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 1e-20
                HHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  4 lrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l +f +va++gsf++A e+L++s +++ rqi r E+el  pLfeR+  glrLT+aGe
  CTQ28476.1  8 LLYFTEVARQGSFRKASEALHVSASSIDRQILRVEQELAMPLFERHPTGLRLTAAGE 64
                779*****************************************************7 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHH CS
       HTH_1  29 avsrqikrLEeel 41 
                 a+s+++++LE ++
  CTQ28476.1 284 AASMMLNQLEMLF 296
                 7899999999776 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   6.9e-05      0.41      23      42 ..      17      36 ..      11      40 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.9e-05
      HTH_50 23 YpStRklAkrLGvShtaian 42
                 +S+Rk+ ++L+vS + i +
  CTQ28476.1 17 QGSFRKASEALHVSASSIDR 36
                58************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2598.27
//
Query:       CTQ28477.1  [L=322]
Description: Vanillate O-demethylase oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-10   39.7   2.5    5.9e-10   39.0   2.5    1.4  1  Fer2           2Fe-2S iron-sulfur cluster binding domain
    8.2e-05   23.2   0.0    0.00026   21.6   0.0    1.9  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    0.00052   20.3   0.0     0.0027   18.0   0.0    2.1  3  FAD_binding_6  Oxidoreductase FAD-binding domain
     0.0015   18.6   0.2     0.0038   17.2   0.2    1.7  1  Fer2_4         2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
       0.01   15.8   0.3      0.023   14.7   0.1    1.7  2  Fer2_3         2Fe-2S iron-sulfur cluster binding domain
      0.017   15.3   0.5        3.4    7.8   0.2    2.5  2  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   2.5     2e-13   5.9e-10       5      77 ..     243     313 ..     239     314 .. 0.82

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 2e-13
                 TEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE.CTTSSSSTHHHHHTTEEEEGGGSEE CS
        Fer2   5 gkevevevadgettlldaaeenggidipysCggggCgtClvevlegev.qsdetelegeeldegklrlaCqtiv 77 
                  ++++++va+++t + ++++++ g+++ +sC++g Cg+C + vl+g   ++d + l+ ee+++++ ++ C++++
  CTQ28477.1 243 SSGQRLQVAADQT-IAQVLQHA-GVEVMLSCEQGMCGSCITGVLDGIPeHRD-SVLTAEEKADNDQITLCCSRA 313
                 4567788888999.*******9.***********************997666.666666666777778888876 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   8.8e-08   0.00026       2     107 ..     114     204 ..     113     206 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 8.8e-08
                    EEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEEE CS
  NAD_binding_1   2 iagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvyv 97 
                     agG Gi+P++++ +ai+++   k+ + l y + ++++ +++ +l++l  +++g    +++ s+e a+    + rv + l   +++   ++t v+ 
     CTQ28477.1 114 FAGGIGITPLLAMAEAIAAR---KGALELHYYVASSRQTAFSPRLNQL--TANG-TVAIHC-SEEGAS---LRQRVPECL---TVP--HPDTVVIA 194
                    69*****************7...799**********************..5566.356777.555555...488888888...455..789***** PP

                    ECSHHHHHHH CS
  NAD_binding_1  98 CGppgMikav 107
                    CGp+g+i+  
     CTQ28477.1 195 CGPEGFIQRL 204
                    ******9865 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   8.9e-07    0.0027      29      97 ..      36     103 ..      21     104 .. 0.85
   2 ?   -2.7   0.0       2.6   7.7e+03      60      92 ..     134     168 ..     130     170 .. 0.64
   3 ?   -1.9   0.0       1.5   4.5e+03      50      74 ..     222     246 ..     210     267 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 8.9e-07
                    ---TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--..TT-HHHHHH.HCS-TT-EEEEEEEE-SE CS
  FAD_binding_6  29 glpvGqhvflrlkikgeaviRsYtpissenekGelellvkvy..pgGkmsqaL.delkigdtleikGPlGkf 97 
                     + +G h+ + ++  g    R+Y+++ +++ +++ e+ v+         s +L ++lk gd l+i+ P  +f
     CTQ28477.1  36 AYSAGAHIDIIIPGVGP---RQYSLCGTPDRSNTYEICVRLTdtS-TGGSRYLhQQLKAGDRLAISPPRNHF 103
                    578999*****997775...**********************752.3469***778**********999887 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.6
                    CCEEEEEEE--..TT-HHHHHHHCS-TT-EEEEEE CS
  FAD_binding_6  60 kGelellvkvy..pgGkmsqaLdelkigdtleikG 92 
                    kG lel+  v   ++ ++s  L++l  + t++i++
     CTQ28477.1 134 KGALELHYYVAssRQTAFSPRLNQLTANGTVAIHC 168
                    55566653333336677788888888888887766 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.5
                    EEE.BSSTTECCEEEEEEE--TT-H CS
  FAD_binding_6  50 sYtpissenekGelellvkvypgGk 74 
                     +tp++++n+  +  + +     G+
     CTQ28477.1 222 RFTPAAENNTAAKNAFYIELTSSGQ 246
                    5666666666666666665555554 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   1.3e-06    0.0038       4      39 ..     239     274 ..     238     303 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.3e-06
      Fer2_4   4 vtltfDGkevtvpeGdtvasAllangvdvprsckyg 39 
                 ++lt  G++++v +++t+a++l+ +gv+v+ sc +g
  CTQ28477.1 239 IELTSSGQRLQVAADQTIAQVLQHAGVEVMLSCEQG 274
                 678999***************************984 PP

>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.7   5.1e+03      64      80 ..     160     176 ..     157     189 .. 0.78
   2 ?   14.7   0.1   7.7e-06     0.023       5      71 ..     221     291 ..     217     316 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.7
      Fer2_3  64 inGkptlaCtatikdla 80 
                  nG++++ C+++  +l 
  CTQ28477.1 160 ANGTVAIHCSEEGASLR 176
                 69999999998766655 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 7.7e-06
      Fer2_3   5 kRfdprrdrgkqkvqeyeveaeeedtvldaL..lkikeev.dptlafrasCregiCGscav.ainGkptla 71 
                  Rf+p+ +++++  + + +e +++ + l++   ++i + + +  +    sC++g+CGsc   +++G p+  
  CTQ28477.1 221 ERFTPAAENNTAAKNAFYIELTSSGQRLQVAadQTIAQVLqHAGVEVMLSCEQGMCGSCITgVLDGIPEHR 291
                 6899988888889999999988666655544114455544467788999**********541567777554 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0011       3.4       5      24 ..     112     131 ..     110     137 .. 0.85
   2 ?    5.2   0.0    0.0073        22     133     154 ..     186     207 ..     132     209 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
                    xxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   5 llvagGiGitpfisilkdll 24 
                    ll agGiGitp++ ++  + 
     CTQ28477.1 112 LLFAGGIGITPLLAMAEAIA 131
                    799**********9987665 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0073
                    xxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 133 knssvgvfvCGppklvkevkkl 154
                    +   + v+ CGp++++++++++
     CTQ28477.1 186 PHPDTVVIACGPEGFIQRLRSV 207
                    5667889***********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2469.61
//
Query:       CTQ28478.1  [L=427]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-15   55.8   6.4    5.3e-09   36.1   3.3    2.4  2  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.4   4.8e-09   8.5e-05       4      50 ..      62     105 ..      60     111 .. 0.84
   2 !   36.1   3.3   2.9e-13   5.3e-09     139     389 ..      96     339 ..      89     415 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 4.8e-09
  Amidohydro_3   4 DakGrlvlPGFvDsHtHlagggvnlrllrlpdarvtslegvltavrd 50 
                   D+ G+l lPG+v++H+Hl+++   + ++r+ +  +  l+++ ++++d
    CTQ28478.1  62 DLAGALTLPGLVEPHAHLDKTF-TIERCRPAQ--AGLLAAIHAMHED 105
                   9********************8.559999988..7777777777666 PP

  == domain 2  score: 36.1 bits;  conditional E-value: 2.9e-13
  Amidohydro_3 139 lregafhlvldlapl.areaeaaavaaalaalasyGitsveagggnvsslddleplfeltaeeklplrviikelldaaerlglpls..pgseeltig 232
                   l+  a h++ +  ++ +r++ ++ + aala++a++G+t+    +  +  +d++++++e+++ +      + +  l+++  ++lpl   p ++e  ++
    CTQ28478.1  96 LA--AIHAMHEDRRHwTRADIQRRASAALARAAANGVTHL-RSHVDWFTADAPDAWQEIARLD------TGGITLERVALVPLPLFrePAQAEAIAR 183
                   44..334444444888999999******************.8888888888888888888888......6677788888888887788********* PP

  Amidohydro_3 233 avklfadgvlgsrtalltepyftgwpdfedealaelvaaadergldvaihaigdaavd.dvldafeaaaekngnqdrrrlehaegv...tesqierv 325
                   +v+ ++   l +  ++ ++         +  a+++l+  a+  +ld+++h++++ +   ++l+ ++ +  ++++ ++  ++h++++   +++q++++
    CTQ28478.1 184 TVANIGERCLLGGFIHSSNW--------DATAMENLLYSAARGDLDLDLHIDEELSEVsQGLTWLADHLSRHPFPGHICCSHGCALaagSDEQAAPI 272
                   *******9999999999993........4555**********************99988*****************99******************* PP

  Amidohydro_3 326 aalqvaagvqpvfnf..edelldsrlg.perargstpvkellnagvkvalgsDapvgpfdpwpriga 389
                    +  +a gv ++  +  +  l+d  +g ++r+rg+t + e  +agv + lg D   + f+p+ ++  
    CTQ28478.1 273 LRQLAAHGVTLIALPmtNLLLQDATFGrTPRQRGITLLHEAQAAGVATLLGCDNVQDAFCPAGSYDP 339
                   ****************8888888999**************************944444555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3276.97
//
Query:       CTQ28479.1  [L=159]
Description: Endoribonuclease L-PSP family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-15   57.3   0.0      4e-13   49.5   0.0    2.1  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   2.2e-17     4e-13       6     119 ..       9     147 ..       5     149 .. 0.87

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 2.2e-17
                    TTSSS-BSEEEETTEEEEEEE-SB-T.....................TTSCB.....-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSG CS
  Ribonuc_L-PSP   6 aaaapYsqavkagnlvyvsGqlpldp.....................etgelv....egdveeqtrqalenlkavLaaagaslsdvVkvtvFladi 76 
                    a++a+Y    +ag+++++sG +p++p                     +tge+     +g + +q   +le +++++a+ag ++sdv+k+  ++ ++
     CTQ28479.1   9 APLARYAAWRRAGDFIFLSGIIPVNPltgtivngfqdvpepvrellgATGEFStdakQGPILAQSWYVLESIRRTVASAGGQMSDVIKLVQYFRNL 104
                    56999***99*************************************88887431113446679999***************************** PP

                    GGHHHHHHHHHHHSSSSTS--EEEEEE-SBSG..GG-SEEEEEEE CS
  Ribonuc_L-PSP  77 edfaevnevyaeafdelkeaParsaveVaaLp..kgakvEIeaia 119
                    ++f  +++v + +++++   P++++v+V+++    ++++E+ea++
     CTQ28479.1 105 DHFPYYSRVRKLFYPDQP--PVSTVVQVSEMLpdATVLIEVEATV 147
                    **********99999995..*********9882455667777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1167.13
//
Query:       CTQ28480.1  [L=293]
Description: putative creatininase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-68  228.8   0.0      8e-68  228.5   0.0    1.0  1  Creatininase  Creatinine amidohydrolase


Domain annotation for each model (and alignments):
>> Creatininase  Creatinine amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.5   0.0   4.5e-72     8e-68       3     241 .]      15     254 ..      14     254 .. 0.91

  Alignments for each domain:
  == domain 1  score: 228.5 bits;  conditional E-value: 4.5e-72
  Creatininase   3 ltwpeveea.lkeddvailPvGstEqHGphlplgtDtliaealaervaeklgak..alvlPtlpyGvseehlgfpGTislspetliavlrdilesla 96 
                   l+w++v+++ +k+++v++lP+G++EqHGphlp+++D++i++ +a ++ ++l+a   a+  P++ yG seehl+fpGT++ls +tl++ l +i+esl+
    CTQ28480.1  15 LSWTDVAALpDKSNTVIVLPTGAIEQHGPHLPCSVDSVISSGVAGHALARLPATipAYAIPPIVYGKSEEHLHFPGTLTLSGDTLLHTLLEIAESLY 111
                   79*******99***********************************999998888899*************************************** PP

  Creatininase  97 rhGfrrivlvngHggnsaalkeaarelraehdaaavrvtaaekelaaalkleeaae.aaeeseeee.gggHAgelEtSlmlalrpelVrmdraedpe 191
                   r+Gfr+++++ngHgg+ ++l+ a+re+r +h ++++ +  ++ ++++       +  ++ +s++e+  ++HAg++Et+lmlal+pe V+m+ra+++ 
    CTQ28480.1 112 RAGFRKLLMINGHGGQPQILQIACREMRLRH-GDFIAIP-HDVFNVP-------NCeKQFLSPHEQrMAMHAGHSETALMLALAPECVHMERAVANF 199
                   *******************************.6655433.3333333.......33344556677779****************************9 PP

  Creatininase 192 eaklakeg.....vstaedaeelspsGvlGdpskataekGealleaaveelaell 241
                   +++++           a+   ++ psGv+Gdp+ at+e+Ge ll+++++++a+++
    CTQ28480.1 200 PPEFPCPTlskgrPAAAWASYDFGPSGVIGDPTPATREQGEGLLDSLAASWAQAI 254
                   9999888899999999***********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 2158.66
//
Query:       CTQ28481.1  [L=327]
Description: ABC transporter substrate-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-26   93.0   0.1    8.7e-26   91.2   0.0    1.9  2  NMT1            NMT1/THI5 like
  ------ inclusion threshold ------
      0.026   14.1   0.0       0.04   13.5   0.0    1.2  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0   9.7e-30   8.7e-26       2     213 ..      39     241 ..      38     243 .. 0.89
   2 ?   -1.8   0.0      0.28   2.5e+03      92     117 ..     300     325 ..     279     327 .] 0.73

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 9.7e-30
                 GGGHHHHHHHHTTHHHHTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEEE-S CS
        NMT1   2 pnhaglyvAkekGYFkeeGldVeivepadpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqeplsglivlkdsgikspkDLkGkrigyvg 100
                 ++h g+y A++ G ++ +GldVei+ ++++ ++++l+a+g+ad  + +  + l + ++g++ v+va+++q++++ +i++++  +++p++Lk k+  +  
  CTQ28481.1  39 AEHGGFYQAQATGLYQHAGLDVEIKMGGPQINVMQLMAAGQADCTLGDNGQALETWQAGVHAVTVATVFQHSPTVFITHDK--VENPAELKDKTFLLAT 135
                 68****************************************************************************998..************9999 PP

                 -TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT-----SEEEEEEHHHHHH-HHHHHHHH CS
        NMT1 101 spfekallkallakdggdpsdvtlvnvggtslakalltgkvDaaiggyenwegvelesegkelrifaladlgvpdyyslvlitnekllkenpelvkkFl 199
                  +    +     ++ g+  s+v    +  +++ +++l++k  +   gy + e +++++ g++  + +l+d+g    y + +i+  ++++++p +v++F+
  CTQ28481.1 136 -EAYTSFWPWAKSELGLAGSKVRP--Y-TFNV-QPFLADKNLVQQ-GYVTSEPFSVAKGGQPFYVYPLSDWGY-PPYGNSIICMADTIRKRPAAVAAFV 227
                 .55556666666666777777777..4.4565.477777766666.66666*********************9.67788999999************** PP

                 HHHHHHHHHHHHSH CS
        NMT1 200 rAlkkGyeyalahP 213
                 +A+ +G++  l++P
  CTQ28481.1 228 KASMEGWKSYLQDP 241
                 ************99 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.28
                 TTSEEEE-S-TTHHHHHHHHHHHTT- CS
        NMT1  92 kGkrigyvgspfekallkallakdgg 117
                 k k i  ++ pfe++   ++++ +g+
  CTQ28481.1 300 KNKLIDASKVPFEQTYTLEMVKDAGV 325
                 45666667777888888888888776 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.4e-06      0.04      16     121 ..      45     144 ..      39     175 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.4e-06
                     HHHHHHHHHHHHSSEEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE CS
  Phosphonate-bd  16 yqpladyLseelGvevelvvatdyaavvealragqvDiaflgplayvqardqagveplatrvrsdGsasyrsviivradsdiqsledLkgktiaf 110
                     yq+ a+ L ++ G +ve++++     v++ ++agq+D  + ++ ++++  + agv ++ + +     +   +v+i+++  ++++ ++Lk+kt+ +
      CTQ28481.1  45 YQAQATGLYQHAGLDVEIKMGGPQINVMQLMAAGQADCTLGDNGQALETWQ-AGVHAVTVATV---FQHSPTVFITHD--KVENPAELKDKTFLL 133
                     566677788999************************************985.66655555554...245555666665..79************* PP

                     --TT-TTTTHH CS
  Phosphonate-bd 111 vspsStsGylv 121
                     +  + ts +  
      CTQ28481.1 134 ATEAYTSFWPW 144
                     ***99995555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2500.59
//
Query:       CTQ28482.1  [L=276]
Description: putative ATP-binding protein BAB2_1147 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-31  108.8   0.0      4e-31  108.4   0.0    1.2  1  ABC_tran      ABC transporter
    0.00066   20.0   0.2     0.0032   17.7   0.2    2.0  1  AAA_22        AAA domain
     0.0017   18.8   0.0      0.003   18.0   0.0    1.5  1  AAA_16        AAA ATPase domain
     0.0042   16.8   0.1     0.0098   15.6   0.1    1.5  1  AAA_29        P-loop containing region of AAA domain
     0.0047   16.8   0.0     0.0085   16.0   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
     0.0095   15.9   0.0      0.016   15.1   0.0    1.3  1  Rad17         Rad17 P-loop domain
  ------ inclusion threshold ------
      0.021   15.3   0.0      0.079   13.4   0.0    1.9  2  AAA           ATPase family associated with various cellular 
      0.026   14.5   0.5      0.054   13.4   0.5    1.9  1  NACHT         NACHT domain
      0.029   13.9   0.1      0.099   12.2   0.0    1.8  2  AAA_25        AAA domain
      0.034   14.5   0.0       0.28   11.6   0.0    2.1  2  RNA_helicase  RNA helicase
      0.042   13.7   0.0       0.25   11.1   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      0.045   13.8   0.1       0.16   12.0   0.0    1.9  2  AAA_5         AAA domain (dynein-related subfamily)
      0.051   13.5   0.0       0.14   12.0   0.0    1.6  2  ATPase_2      ATPase domain predominantly from Archaea
       0.07   12.8   0.0        0.2   11.3   0.0    1.7  2  AAA_30        AAA domain
       0.16   11.3   0.1        0.4   10.0   0.0    1.6  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.17   11.1   0.1       0.32   10.2   0.1    1.3  1  NB-ARC        NB-ARC domain
       0.21   11.0   0.0        6.7    6.1   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   0.0   3.8e-34     4e-31       3     136 ..      42     180 ..      40     181 .. 0.94

  Alignments for each domain:
  == domain 1  score: 108.4 bits;  conditional E-value: 3.8e-34
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeieka 88 
                  v+l++++ge + ++G++G+GKStLlk++agl++p  G++ l  +    +++e++++ +++++qe++l p ++vr+n             e + +++++
  CTQ28482.1  42 PVNLTINQGEFITLLGPSGCGKSTLLKMVAGLVEPSDGKLMLWRR----DSREKAQHPLSFVFQEATLMPWSSVRNNvrlpldlagvpraEGNTRVSEV 136
                 69**************************************66655....5566***********************************9999999**** PP

                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 l+ +gl +++d       ++LSgG++ rv++ar l+++pklll+DEp+
  CTQ28482.1 137 LELVGLGKFADVLP----RELSGGMQMRVSIARGLVTRPKLLLMDEPF 180
                 ********988887....*****************************6 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2     3e-06    0.0032       4      99 ..      49     178 ..      47     217 .. 0.55

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee..............erpevvfvtlpsstsskdllrellralglelka.................. 70 
                 +  ++++ G+sG+GK+tll++++   +  +   +              ++p  + ++ + ++ ++++++++   l+l +                    
  CTQ28482.1  49 QGEFITLLGPSGCGKSTLLKMVAGLVEP-S---DgklmlwrrdsrekaQHPLSFVFQEATLMPWSSVRNNVRLPLDLAGVPraegntrvsevlelvglg 143
                 56799****************9987632.1...123467776666665333333444444444555555555555544444444555555555555555 PP

      AAA_22  71 ........erlsseellealeqalraravielliiDE 99 
                         e     +++  +++ l +r +  ll+ DE
  CTQ28482.1 144 kfadvlprELSGGMQMRVSIARGLVTRPK--LLLMDE 178
                 55555554444444444555555555544..666666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.8e-06     0.003      22      52 ..      48      78 ..      38     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.8e-06
      AAA_16 22 grpelvllsGesGvGKsslvrellralekdg 52
                +++e + l G+sG+GKs+l+++++  +e ++
  CTQ28482.1 48 NQGEFITLLGPSGCGKSTLLKMVAGLVEPSD 78
                456899***************9997666664 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   9.3e-06    0.0098      18      41 ..      46      69 ..      41      80 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.3e-06
      AAA_29 18 eidlkgatlltGpsGsGKSTllDA 41
                +i++ +++ l GpsG GKSTll  
  CTQ28482.1 46 TINQGEFITLLGPSGCGKSTLLKM 69
                56655588999**********955 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     8e-06    0.0085      98     121 ..      49      72 ..      20      83 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8e-06
                  TTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallp 121
                  ++++++l+G+SG GKStL++++++
   CTQ28482.1  49 QGEFITLLGPSGCGKSTLLKMVAG 72 
                  45899**************98876 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.5e-05     0.016      44      66 ..      49      71 ..      24      80 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.5e-05
       Rad17 44 kkriLLisGPsGCgkstvvkvLs 66
                + + + + GPsGCgkst +k+++
  CTQ28482.1 49 QGEFITLLGPSGCGKSTLLKMVA 71
                45567788************987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.5e-05     0.079       2      21 ..      54      73 ..      53     117 .. 0.88
   2 ?   -0.6   0.0       1.5   1.6e+03      58      93 ..     170     199 ..     125     240 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.5e-05
                EEESSTTSSHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavake 21
                 l Gp G+GK++l k va  
  CTQ28482.1 54 TLLGPSGCGKSTLLKMVAGL 73
                689**************975 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.5
                 TSEEEEEET....GGGHHHHHTTCCCHHHHHHHHHHHHHH CS
         AAA  58 kpsilfiDE....idalaksrsgseseeeervvnqLltel 93 
                 +p+ l++DE    +d++++++          + + Ll+ +
  CTQ28482.1 170 RPKLLLMDEpfgaLDEITRNK----------LDSDLLRLW 199
                 456666666433333333333..........333344433 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.5   5.2e-05     0.054       3      41 ..      53     101 ..      51     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.2e-05
                 EEEEC-TTTCHHHHHHHHH..........HHHCTS-SCCCC-SEEEEEE CS
       NACHT   3 vilqGeaGsGKTtLlqkla..........lawaegklpqgafklvFfls 41 
                 + l G++G+GK+tLl+ +a          ++w+++  ++ +++l+F+++
  CTQ28482.1  53 ITLLGPSGCGKSTLLKMVAglvepsdgklMLWRRDSREKAQHPLSFVFQ 101
                 6799***********9997333333333344555555554555555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.4e-05     0.099      30      50 ..      47      67 ..      37      91 .. 0.87
   2 ?   -1.5   0.0       1.5   1.6e+03     172     190 ..     195     213 ..     189     216 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.4e-05
      AAA_25 30 lpagelallaGapgtGKttla 50
                +  ge++ l G++g+GK+tl+
  CTQ28482.1 47 INQGEFITLLGPSGCGKSTLL 67
                789****************97 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
      AAA_25 172 leriarrtgaavllvhHvg 190
                 l r+ ++ + +v++v H+ 
  CTQ28482.1 195 LLRLWQEQNLTVVFVTHSI 213
                 5566678999******985 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00027      0.28       1      19 [.      53      71 ..      53     104 .. 0.84
   2 ?    0.5   0.0      0.75   7.9e+02      55     105 ..     176     227 ..     161     229 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00027
  RNA_helicase  1 iwlyGpsgeGKStlakeLa 19
                  i l Gpsg+GKStl k +a
    CTQ28482.1 53 ITLLGPSGCGKSTLLKMVA 71
                  5689**********99854 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.75
  RNA_helicase  55 idDfgqvkdee.npsdlaelirlvsstpyplnmasleekgtlftSkvvivts 105
                   +d+     de    +  ++l+rl + +++++     + ++ +f S+ vi+++
    CTQ28482.1 176 MDEPFGALDEItRNKLDSDLLRLWQEQNLTVVFVTHSIHEAVFLSQRVIMMA 227
                   5554444444433345578888888888888888888888999999999987 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00023      0.25       2      22 ..      53      73 ..      52     121 .. 0.80
   2 ?    0.2   0.0       0.5   5.3e+02     280     299 ..     194     213 ..     145     215 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00023
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                  l Gp g+GKS+LL+   +l
  CTQ28482.1 53 ITLLGPSGCGKSTLLKMVAGL 73
                6799************99887 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.5
      AAA_21 280 ellkelsrngaQviltTHSp 299
                 +ll++ ++ +  v+++THS 
  CTQ28482.1 194 DLLRLWQEQNLTVVFVTHSI 213
                 44444444788999999995 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00015      0.16       4      35 ..      55      87 ..      53      92 .. 0.77
   2 ?   -2.0   0.0       3.1   3.3e+03      28      37 ..     205     214 ..     179     236 .. 0.46

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
                EE--SSSSHHHHHHHGGGGB.S--EEEEE--TT CS
       AAA_5  4 LvGppGtgKselaerlaaal.nreveyvqltrd 35
                L+Gp+G+gKs+l + +a ++  +    ++ +rd
  CTQ28482.1 55 LLGPSGCGKSTLLKMVAGLVePSDGKLMLWRRD 87
                9*************9999987666555555555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.1
                 EEEE--TT-- CS
       AAA_5  28 eyvqltrdtt 37 
                 ++v  t ++ 
  CTQ28482.1 205 TVVFVTHSIH 214
                 2332332222 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00014      0.14      19      44 ..      49      74 ..      40     114 .. 0.80
   2 ?   -1.7   0.0       2.1   2.2e+03     147     171 ..     197     219 ..     171     233 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
    ATPase_2 19 pneiyfiYGpegsGKtaLlkeiienl 44
                + e++ + Gp g+GK++Llk ++   
  CTQ28482.1 49 QGEFITLLGPSGCGKSTLLKMVAGLV 74
                56788899************987665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.1
    ATPase_2 147 nliesltkekhlcvviclsS..eglfi 171
                 +    l +e++l+vv+++ S  e +f+
  CTQ28482.1 197 R----LWQEQNLTVVFVTHSihEAVFL 219
                 3....4456899999988875555555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019       0.2      17      48 ..      49      80 ..      42      97 .. 0.81
   2 ?   -2.2   0.0       2.7   2.8e+03      40      65 ..     197     222 ..     182     235 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggr 48
                +  + +l Gp G GK+t+lk ++ ++e + g+
  CTQ28482.1 49 QGEFITLLGPSGCGKSTLLKMVAGLVEPSDGK 80
                44588999***************999988555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.7
      AAA_30  40 eaweaaggrviglAptgkaAkvLaee 65 
                 ++w++++ +v+ ++++   A  L++ 
  CTQ28482.1 197 RLWQEQNLTVVFVTHSIHEAVFLSQR 222
                 56777777777777777766666655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00038       0.4      23      51 ..      51      79 ..      36      97 .. 0.83
   2 ?   -2.5   0.0       2.5   2.7e+03     116     159 ..     184     231 ..     164     236 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00038
  Mg_chelatase 23 HnlllvGppGsGKtmlakrlpsllpplse 51
                    + l+Gp+G+GK+ l k +++l+ p + 
    CTQ28482.1 51 EFITLLGPSGCGKSTLLKMVAGLVEPSDG 79
                  55789****************99987765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.5
  Mg_chelatase 116 pefkrkvlev..LRePledg..evtisrakakvefparfqlvaamNpc 159
                    e++r+ l++  LR   e++   v ++ + +++ f ++  +++a+ p 
    CTQ28482.1 184 DEITRNKLDSdlLRLWQEQNltVVFVTHSIHEAVFLSQRVIMMAARPG 231
                   455555554322555545431156666777777777777777777765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1    0.0003      0.32      21      40 ..      51      70 ..      44      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0003
                EEEEEEESTTSSHHHHHHHH CS
      NB-ARC 21 lvvalvGmgGvGKttlakqi 40
                 +++l G  G+GK+tl+k +
  CTQ28482.1 51 EFITLLGPSGCGKSTLLKMV 70
                599*************9976 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0064       6.7      24      42 ..      50      68 ..      30      75 .. 0.83
   2 ?    2.9   0.0     0.058        61     135     192 ..     151     204 ..     115     232 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0064
                SSEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlld 42
                 +f  ++Gp G+GKs ll 
  CTQ28482.1 50 GEFITLLGPSGCGKSTLLK 68
                468999*********9986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.058
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf 192
                  +LSgG +  v++a       v +  l l+De   aLDe  ++k+ + l +  ++  +
  CTQ28482.1 151 RELSGGMQMRVSIA----RGLVTRPKLLLMDEPFGALDEITRNKLDSDLLRLWQEQNL 204
                 56777765444444....4445556688999999999999998886544433322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2022.78
//
Query:       CTQ28483.1  [L=271]
Description: Hydroxymethylpyrimidine ABC transporter, transmembrane component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-25   88.0  20.2    6.1e-25   88.0  20.2    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   6.4      0.45   8.1e+03      36      62 ..      27      69 ..      14      80 .. 0.48
   2 !   88.0  20.2   3.4e-29   6.1e-25       2     182 ..      82     257 ..      81     260 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.45
  BPD_transp_1 36 aillvlvf................vilsilghlilpviillll 62
                  a++l++                  v+l +l+++ +p++++ll+
    CTQ28483.1 27 AMVLLWQGavsyfripaflvpsplVMLESLWTHLTPLLLALLF 69
                  4444433344444444444444442334444444443333333 PP

  == domain 2  score: 88.0 bits;  conditional E-value: 3.4e-29
  BPD_transp_1   2 illGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   i++G+ +a  l +n+++  +l p+i +l+ +P++++a+l++       +++++ l+++++++l+a+++++ ++ ++lrs++ +l  ++r+  asrwq
    CTQ28483.1  82 IVIGAAVAfiLVQNRFVETALFPYIVFLQVTPIVAIAPLII------IWVKDATLSLVVCATLMAVFPIISNTTQGLRSVSPGLLSYFRLNHASRWQ 172
                   89999************************************......9************************************************* PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpG....lgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                   ++++ ++P+alp+++  l++++g++l gav++ef+++ +G    l +++l+a  + d++     +++a+++++ l  ++++ ++ ++++r
    CTQ28483.1 173 TLVRLRIPSALPYFFGALRISSGLSLIGAVVAEFVAGTGGtntgLAYQILQAGYQLDIP-----LMFAALLLISLAGIALFGVMSWVSRR 257
                   ************************************99999999999999999999999.....56666666666666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2174.58
//
Query:       CTQ28484.1  [L=473]
Description: FAD/FMN-containing dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-26   92.8   0.2    6.5e-26   90.7   0.2    1.9  2  FAD_binding_4   FAD binding domain
  ------ inclusion threshold ------
      0.026   14.2   0.0      0.063   12.9   0.0    1.7  1  FAD-oxidase_C   FAD linked oxidases, C-terminal domain
       0.07   12.9   0.0       0.13   11.9   0.0    1.4  1  Formyl_trans_N  Formyl transferase


Domain annotation for each model (and alignments):
>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.2   1.1e-29   6.5e-26       2     130 ..      54     183 ..      53     191 .. 0.97
   2 ?   -1.2   0.0      0.26   1.6e+03       4      27 ..     386     409 ..     384     410 .. 0.89

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 1.1e-29
                    EEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTC CS
  FAD_binding_4   2 aavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgi 96 
                    +avvrp++eee++ ++ ++++++lp++ rG+ ++  gq v  +gg+++d++ ln+i+ +   +gt++++aG++l+d++ a++++g+ l++ p+++ 
     CTQ28484.1  54 DAVVRPRDEEELRQLVSACAQHQLPLTLRGSATGNYGQLVpLEGGLLVDMTGLNQIVALG--NGTVRAQAGIRLADIETAARPTGWELRCMPSTYR 147
                    89*************************************99*********99****9999..9********************************* PP

                    GSBHHHTTTTT-EETTEEGG--HH..GTEEEEEEEE CS
  FAD_binding_4  97 pgtvGGaiatnagGygsekyGlir..dnvlglevvl 130
                     +++GG+  ++ gG gs  yG+++   nvl+++v++
     CTQ28484.1 148 LASLGGLYGGGFGGIGSINYGPLAapGNVLSVKVMT 183
                    **********************99999*******98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.26
                    EEEESSHHHHHHHHHHHHHCTSCE CS
  FAD_binding_4   4 vvrpeseeevaaalrlaneaglpv 27 
                    +vr +++e + +++++ +++++++
     CTQ28484.1 386 LVRYTTPERLNDIMQIFRDNDVKI 409
                    68999**************99986 PP

>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     1e-05     0.063     234     250 .]     431     447 ..     429     447 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
                    HHHHHH-TT--BSTT-- CS
  FAD-oxidase_C 234 riKaalDPkgiLNPgkv 250
                    ++K+ lDP+g+LNPgk+
     CTQ28484.1 431 AVKQSLDPAGLLNPGKL 447
                    79*************96 PP

>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.2e-05      0.13     109     134 ..     293     318 ..     278     325 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.2e-05
                     SSSTTTTBSS-HHHHHHHTTSSEEEE CS
  Formyl_trans_N 109 pSLLPrfkGaaaiqraleaGdketGv 134
                      SLLPr++G++ai++a e+  +  G 
      CTQ28484.1 293 ASLLPRHHGSNAIRQASEEARTRNGS 318
                     59****************99999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3440.69
//
Query:       CTQ28485.1  [L=109]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 916.16
//
Query:       CTQ28486.1  [L=59]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      157  (0.00875676); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 497.61
//
Query:       CTQ28487.1  [L=302]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-43  149.4   0.0    1.5e-43  149.1   0.0    1.1  1  DUF535    Protein of unknown function (DUF535)


Domain annotation for each model (and alignments):
>> DUF535  Protein of unknown function (DUF535)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.1   0.0   8.3e-48   1.5e-43      39     276 ..      61     285 ..      42     290 .. 0.90

  Alignments for each domain:
  == domain 1  score: 149.1 bits;  conditional E-value: 8.3e-48
      DUF535  39 llkkqprllekllrpYlsknlsakqrleaivdhytfleelltaellqellekk..gltlaelegkeeeeleleLsinagqrkEGelsLelrdedkqlly 135
                 + k    + +k++++Yl k+ls +++l++    ++f+e+ +  ++l++l++    g +++++  k++++l+++L   + +++EGel L+l+  d +++y
  CTQ28487.1  61 VTKGLVPFEDKPFKAYLNKRLSKRRKLDIAHGSLNFIEKTFHPDVLPQLYNVAdfGREMFSIPLKNGDKLDVKL-LASPFQEEGELMLQLFLGD-RRVY 157
                 55555556789***************************************98668999****************.6999*************88.77** PP

      DUF535 136 sltFtllkregektllIGalQGpkkenakelikqlTKachGlrPkrLllealkllaealgveqilavsnkghvyrqlryrlkkkkklvadYdefWeelg 234
                 s+ F+ +        +IG++QG k + +++ +k lTK++hG rPk++++ +l  l + +++++++a+  +    +     + k++ ++a+Y+++W e+g
  CTQ28487.1 158 SVCFSCT---DDGRAYIGGIQGGK-DITNDEVKVLTKELHGARPKNIIMSVLYGLLRYFNISTVYAIDSD----Y-----HVKSDLVKASYSSLWLEMG 243
                 *****99...66799********9.888999**************************************9....3.....468899************* PP

      DUF535 235 GeakdkeyyeLPleeerkdleeiaskKRseYrkRyalldele 276
                 Ge++++++y+LP +e +k++ee++sk Rs++ kR  l + ++
  CTQ28487.1 244 GEKQARGWYKLPAQEIKKSIEEVKSKHRSQFIKREGLKELIQ 285
                 **********************************77766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2346.00
//
Query:       CTQ28488.1  [L=57]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 435.37
//
Query:       CTQ28489.1  [L=46]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 353.99
//
Query:       CTQ28490.1  [L=296]
Description: LysR family transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-41  141.2   1.2    4.3e-41  140.6   1.2    1.2  1  LysR_substrate  LysR substrate binding domain
    3.4e-18   65.3   2.6    3.4e-18   65.3   2.6    1.8  2  HTH_1           Bacterial regulatory helix-turn-helix protein
    0.00024   20.3   0.0      0.038   13.1   0.0    2.2  2  PBP_like        PBP superfamily domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   1.2   7.2e-45   4.3e-41       4     205 ..      91     291 ..      89     294 .. 0.98

  Alignments for each domain:
  == domain 1  score: 140.6 bits;  conditional E-value: 7.2e-45
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsl 98 
                     +rg+++++a p++a+ +lp++l++fr ry +v + ++   +e+++++++eg++ ++i+++p + ++l ++pLa +++v++++++ pLa+++++++
      CTQ28490.1  91 QRGKISVAAMPSFAANVLPEALKAFRDRYAGVNVTVHDVINEQVIEMVREGRVEMGIAFEPSPNHNLLFTPLAVDRFVAIVPQQSPLAKKKQLTW 185
                     69********************************************************************************************* PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrel 193
                     ++L  +++i+l+++s+ r  le+al+++g++++vale+ +l ++ ++va+GlG + +p++  +  +a+ + v++pl++pp++  +++++  + +l
      CTQ28490.1 186 QELLTLDFITLQRPSAVRLMLEEALARSGRQLDVALESHQLVTVGRMVASGLGGSAVPALC-KTQMASLGAVCIPLSDPPIEKCVGAIHAGHLPL 279
                     ************************************************************9.67788888899********************** PP

                     HHHHHHHHHHHH CS
  LysR_substrate 194 spavrafidflr 205
                     s+a++a++d l+
      CTQ28490.1 280 SKAAQALLDTLK 291
                     *********997 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   2.6   5.7e-22   3.4e-18       2      60 .]       6      64 ..       5      64 .. 0.98
   2 ?   -3.6   0.0       1.9   1.1e+04      16      23 ..     279     286 ..     276     286 .. 0.82

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 5.7e-22
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                +qlr+f+ava + +f+ A e+L+lsqpa+s  ik LEe+lg  L++R++r+++LT++Ge
  CTQ28490.1  6 KQLRAFLAVAHTLNFAHASERLNLSQPALSLTIKGLEEALGGALLQRSTRKVTLTQEGE 64
                79********************************************************7 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.9
                 HHHHHHHH CS
       HTH_1  16 ftrAAeeL 23 
                 +++AA++L
  CTQ28490.1 279 LSKAAQAL 286
                 68999987 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   6.3e-06     0.038     133     178 ..     131     174 ..     107     183 .. 0.84
   2 !    5.4   0.0    0.0015         9      84     168 ..     183     262 ..     174     291 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.3e-06
                 HHHHHCCHCCETTCCECCCGG-HCCCCCCECTTCE-EEEEEEEECT CS
    PBP_like 133 hlavaaaVaagradvgvgieavaeelkgldfvplaeerydlvvrke 178
                 + +v ++V+ gr+ +g+++e+   + ++l f+pla  r+  +v+++
  CTQ28490.1 131 NEQVIEMVREGRVEMGIAFEPSP-N-HNLLFTPLAVDRFVAIVPQQ 174
                 6889*******************.5.7************9999876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0015
                 -BGGGC-S-B-EEEEE-TTSHHHHHHHHHHC-CEECTE-SSTTSEEESSHHHHHCCHCCETTCCEC.CCGG-HCCCCCCECTTCE- CS
    PBP_like  84 tnwkdladaplrlvnRetGSGtrdlfdellkkegiskssikgyaqearshlavaaaVaagradvgv.gieavaeelkgldfvplae 168
                  +w++l    l +++ ++ S  r++++e+l++   s+ ++   a e  + ++v ++Va+g +  +v ++ ++  +  g   +pl++
  CTQ28490.1 183 LTWQEL--LTLDFITLQRPSAVRLMLEEALAR---SGRQLDV-ALESHQLVTVGRMVASGLGGSAVpALCKTQMASLGAVCIPLSD 262
                 567777..66889999999***********88...5555555.789999999*******987666545544443333555566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2347.93
//
Query:       CTQ28491.1  [L=235]
Description: acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-74  250.6   0.1    1.2e-74  250.4   0.1    1.0  1  CoA_trans  Coenzyme A transferase


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.4   0.1   6.6e-79   1.2e-74       4     215 ..      11     217 ..       8     219 .. 0.97

  Alignments for each domain:
  == domain 1  score: 250.4 bits;  conditional E-value: 6.6e-79
                 HHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHTTTSEEEEESTTTE..ECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHHHH CS
   CoA_trans   4 aaeavakeikdGmtvavGGFgligiPealiaalarsgvkdltviiseagv..lglgplllngsvkkviasyggetvnprfgkqflsgelefellpqgtl 100
                  ++a++  + dGmt++ GGFgl+giPe+lia++ r+ v++ltv+++++gv  +glg+ll +++v kv+asy+ge  n  f++ +lsgel +el+pqgtl
  CTQ28491.1  11 YEAALE-GLTDGMTLLAGGFGLCGIPENLIAEVQRRQVQGLTVVSNNCGVdgFGLGMLLESRQVSKVVASYVGE--NALFEQLVLSGELAVELTPQGTL 106
                 566776.9******************************************************************..*********************** PP

                 HHHHHHHHHTEETTEEEESTTTTSHGGTTESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHSHHHHHHEEEEEEEEEEEECTTSS CS
   CoA_trans 101 aerlraGgaglpelgfltntgigtlvapklkkvpgfgGaeyilepalkadvalikaskadeegnlvfeksagnfnkpaiaeaakvtileveeivekgkl 199
                 ae +raGgag+p  gf+t tg+gt va++ k+v++f+G++yile+a++ d+al+k +kad +gn+v++++a+nfn p +a+a+++t++eveeiv+ g+l
  CTQ28491.1 107 AEKIRAGGAGIP--GFYTATGYGTPVAEG-KEVRQFDGRHYILEEAIRGDFALVKGWKADWYGNVVYRHTAQNFN-PLMATAGRITVVEVEEIVPPGEL 201
                 ************..***************.9********************************************.*********************** PP

                 ECCCESBTGGGHSEEE CS
   CoA_trans 200 dpekvliPgvlvdavv 215
                 +p ++++Pg++vd+++
  CTQ28491.1 202 PPSAIHTPGIYVDRLI 217
                 *************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1878.48
//
Query:       CTQ28492.1  [L=218]
Description: acetoacetyl-CoA transferase, beta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-40  137.7   1.5    3.9e-40  137.5   1.5    1.0  1  CoA_trans        Coenzyme A transferase
    7.1e-07   29.3   0.2    9.9e-07   28.8   0.2    1.3  1  AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal 


Domain annotation for each model (and alignments):
>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   1.5   4.4e-44   3.9e-40       2     216 ..       5     200 ..       4     201 .. 0.96

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 4.4e-44
                 CHHHHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHTTTSEEEEESTTTEECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHHHH CS
   CoA_trans   2 etaaeavakeikdGmtvavGGFgligiPealiaalarsgvkdltviiseagvlglgplllngsvkkviasyggetvnprfgkqflsgelefellpqgtl 100
                 e++a +va+e++dG++v++G    igiP +l+a++++     +++++se+g+lg+g  + ++ ++++++++g++tv+  +g+++++++ +f+ +++g++
  CTQ28492.1   5 EQMAMRVAQELRDGDYVNLG----IGIP-TLVANYIPA--GIEVMLQSENGLLGMGEFPDEETIDADMINAGKQTVTAQTGAAIFDSAQSFA-MIRGGH 95 
                 78999***************....****.*********..889*************************************************.****** PP

                 HHHHHHHHHTEETTEEEESTTTTSHGGTTESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEESSGGGHTTHSHHHHHHEEEEEEEEEEEECTTSS CS
   CoA_trans 101 aerlraGgaglpelgfltntgigtlvapklkkvpgfgGaeyilepalkadvalikaskadeegnlvfeksagnfnkpaiaeaakvtileveeivekgkl 199
                 ++ +++G+ +++  g++++++i+    +k  +v+g+gGa++++ +a + +++++ +  +++e++l  +++++ ++ ++i+  ++ t+l+ +ei  +   
  CTQ28492.1  96 VDLTVLGAFEVDVAGNIASWMIP----GK--MVKGMGGAMDLVAGAQN-IIVVMTHASKNGESKLLPQCTLPLTGVGCIR--RVLTDLALLEI--VDGA 183
                 ***********************....66..****************6.88888888888********************..***********..7889 PP

                 ECCCESBTGGGHSEEEE CS
   CoA_trans 200 dpekvliPgvlvdavve 216
                   ++++ Pgv+ d+v++
  CTQ28492.1 184 FVLREVAPGVSPDEVIR 200
                 999***********985 PP

>> AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.2   1.1e-10   9.9e-07      37     102 ..      99     158 ..      64     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.1e-10
                      EEEE-SEEETTS-EESSECTTCCTCGGTTHHHHHHHHHHSTT-EEEEE--SEETTTTEESEESS-S CS
  AcetylCoA_hyd_C  37 sinsalevdltGqvnseslggrvvsGvGgqldFvrgaalskggksiialpStakkgeiSrIvpslk 102
                      ++  a+evd+ G+++s ++ g++v G+Gg +d v+ga++      i++++ ++k+ge S+ +p+++
       CTQ28492.1  99 TVLGAFEVDVAGNIASWMIPGKMVKGMGGAMDLVAGAQN-----IIVVMTHASKNGE-SKLLPQCT 158
                      567899********************************9.....6666666667777.99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1866.82
//
Query:       CTQ28493.1  [L=393]
Description: Acetyl-CoA acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.2e-102  340.0   0.1   1.1e-101  339.6   0.1    1.2  1  Thiolase_N     Thiolase, N-terminal domain
    6.3e-51  171.2   0.9    1.1e-50  170.3   0.9    1.5  1  Thiolase_C     Thiolase, C-terminal domain
    1.6e-07   31.1   3.1    9.1e-07   28.7   0.5    3.0  3  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
  ------ inclusion threshold ------
       0.32   10.9   4.0        4.8    7.1   0.3    2.9  3  ACP_syn_III    3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.6   0.1  2.5e-105  1.1e-101       1     259 [.       4     263 ..       4     264 .. 0.99

  Alignments for each domain:
  == domain 1  score: 339.6 bits;  conditional E-value: 2.5e-105
                 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsi 99 
                 ++iv+a+rtpig+f+g+++ lsa++L+a+++++lle+ ++++++vde+i+G+vl+ag gqn+arq al+ag+p ++pavtvn vc+Sglkav +a+q+i
  CTQ28493.1   4 IAIVAAVRTPIGSFRGAFAPLSAVDLGAAVVRGLLERCQLPAAAVDELIFGQVLTAGCGQNPARQTALRAGLPVDTPAVTVNLVCGSGLKAVQQAVQAI 102
                 68************************************************************************************************* PP

                 HTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTBE CS
  Thiolase_N 100 aageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdeiv 198
                 ++g+a +v+agG+Esmsnap+ ++  +r+gl++g++ ++d +i+dgl+dafn++hmG+taenla++++isRe+qd+fA++s++kaaaa++ag+F++eiv
  CTQ28493.1 103 RCGDAGIVIAGGQESMSNAPYLMH-GARDGLRFGHASLQDSMIQDGLWDAFNDYHMGITAENLADAFDISRERQDAFAASSQRKAAAAIAAGRFREEIV 200
                 ***********************8.99************************************************************************ PP

                 -EEEEESSSE.EEE-S-TTS-TT--HHHHHTS-BSSSTT.SS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 199 Pvkvkgkkgk.ktvdkdeairsevtaekLaklkpaFkke.GtvtAgnasqisDGaaavllmse 259
                 Pv+v++ k+   +v+ de++r+e++  +La+l+paF+ + G+vtAgnas+++DGaaavllm+ 
  CTQ28493.1 201 PVSVPQGKKPpRVVTDDEQPRPETSEQQLAQLRPAFRPAdGSVTAGNASSLNDGAAAVLLMRV 263
                 ******999999**************************99*********************85 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.3   0.9   2.6e-54   1.1e-50       2     122 ..     272     392 ..     271     393 .] 0.98

  Alignments for each domain:
  == domain 1  score: 170.3 bits;  conditional E-value: 2.6e-54
                 --SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHC CS
  Thiolase_C   2 kplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkke 100
                  +la+i+s a++gvdp+ +g+gP+ a +++l++ag+t++++dl+E+nEAFa+qaLav + l++d ekvNvnGGaialGHP+GasG+Ri+v+l++e++++
  CTQ28493.1 272 PVLARIVSSAVAGVDPSVMGIGPVSACRQALQRAGWTLDEVDLIEANEAFAVQALAVGQLLEWDSEKVNVNGGAIALGHPIGASGCRILVSLVHEMQRR 370
                 579************************************************************************************************ PP

                 TTSEEEEEEEETTTEEEEEEEE CS
  Thiolase_C 101 ggklgvaalCigggqgvalvie 122
                 g+ +g+a+lC gggqg+a+ ++
  CTQ28493.1 371 GASKGLATLCVGGGQGIAMTLQ 392
                 *******************997 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.5     2e-10   9.1e-07     165     207 ..      78     120 ..      66     132 .. 0.90
   2 ?    0.2   0.0       0.1   4.6e+02     228     253 .]     235     266 ..     224     266 .. 0.77
   3 ?   -0.1   0.0      0.13   5.7e+02      95     111 ..     297     316 ..     285     389 .. 0.72

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2e-10
                    -SSEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---S CS
  ketoacyl-synt 165 rGpsvtvdtACsSslvavhaavqslrsgeadvalaGGvelllt 207
                    + p+vtv   C S+l+av++avq++r g+a +++aGG e + +
     CTQ28493.1  78 DTPAVTVNLVCGSGLKAVQQAVQAIRCGDAGIVIAGGQESMSN 120
                    5699**********************************98876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.1
                    TTBTTB......-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 228 afdpka......dGfvlGEGvGavvLkrleda 253
                    af+p++      +   l +G++av+L+r ++a
     CTQ28493.1 235 AFRPADgsvtagNASSLNDGAAAVLLMRVDKA 266
                    56666666666677778899999999998776 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.13
                    HHHHHHHHHTS-HHTC...T CS
  ketoacyl-synt  95 aawealedagltpeel...d 111
                    a+++al++ag+t +e+   +
     CTQ28493.1 297 ACRQALQRAGWTLDEVdliE 316
                    78899999999988874443 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.3    0.0011       4.8       3      38 ..      84     119 ..      82     123 .. 0.85
   2 ?   -2.7   0.0       1.2   5.4e+03      32      49 ..     159     177 ..     156     195 .. 0.69
   3 ?    3.9   0.1     0.011        48      52      66 ..     251     265 ..     241     277 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0011
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGG CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetls 38 
                  +n +C + + a+++A ++i+ g a  v+  g e +s
   CTQ28493.1  84 VNLVCGSGLKAVQQAVQAIRCGDAGIVIAGGQESMS 119
                  7899******************88877766666666 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
                  EEEEEGGGCS-TTT.HHHH CS
  ACP_syn_III  32 igaetlskilDwkd.rsta 49 
                  i+ae+l++ +D ++ r+ a
   CTQ28493.1 159 ITAENLADAFDISReRQDA 177
                  6788888888876435444 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.011
                  B-EEEEEEEEEEESS CS
  ACP_syn_III  52 fGDGAgAvvleasee 66 
                  + DGA+Av+l + ++
   CTQ28493.1 251 LNDGAAAVLLMRVDK 265
                  78********98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2868.73
//
Query:       CTQ28494.1  [L=286]
Description: 3-hydroxybutyryl-CoA dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-52  176.9   0.0    4.8e-52  176.4   0.0    1.2  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
    6.1e-19   68.4   0.0      1e-18   67.7   0.0    1.4  1  3HCDH           3-hydroxyacyl-CoA dehydrogenase, C-terminal d
    1.1e-05   25.4   0.0    3.9e-05   23.7   0.0    1.9  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
      9e-05   22.7   0.0     0.0002   21.6   0.0    1.7  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
     0.0052   16.5   0.1     0.0092   15.6   0.1    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0067   15.7   0.0      0.011   15.0   0.0    1.3  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0071   16.9   0.0      0.014   15.9   0.0    1.7  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
     0.0076   16.5   0.1      0.017   15.3   0.1    1.6  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0082   16.7   0.0      0.015   15.8   0.0    1.4  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.015   14.9   0.0    1.3  1  DAO             FAD dependent oxidoreductase
      0.011   15.3   0.0      0.025   14.2   0.0    1.5  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
      0.036   13.1   0.1      0.049   12.7   0.1    1.1  1  GIDA            Glucose inhibited division protein A
      0.052   13.6   0.0      0.077   13.0   0.0    1.4  1  CbiA            CobQ/CobB/MinD/ParA nucleotide binding domain
      0.079   12.7   0.1        2.3    8.0   0.0    2.7  2  Regnase_1_C     Endoribonuclease Regnase 1/ ZC3H12 C-terminal
       0.12   11.7   0.0       0.16   11.2   0.0    1.2  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.4   0.0     4e-55   4.8e-52       2     178 ..       6     182 ..       5     184 .. 0.98

  Alignments for each domain:
  == domain 1  score: 176.4 bits;  conditional E-value: 4e-55
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfael 100
                 +av+GaG+mG gia  fa++g+ V+l+d+++++l+++ + +++ l++l+++g+ + ++++a+lar+++t  l++++da l iEa++E+l+lK++++ael
  CTQ28494.1   6 LAVLGAGLMGVGIACHFARHGHAVRLYDTDPQRLAEVPAVASAILRELEASGQQDPADRDAVLARLTPTPTLNALADATLLIEAIPERLALKHALYAEL 104
                 69************************************************************************************************* PP

                 HCCS-TTSEEEE--SSS-HHHHCCCSSSGGGEEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT-EEEEEC CS
     3HCDH_N 101 ekiakpdailasnTSslsiselaealkrperviglHFfnPpplmkLvEvvrgekTseetvatvvelakkigktpvvvk 178
                 e+++ +++i+asnTS+l++++la+ +++per++++HF+ Pp+l++LvEvv+g++T ++   +v +++++   ++vv++
  CTQ28494.1 105 ETLIADETIIASNTSGLPPDRLAQGMRHPERLLIAHFWHPPHLIPLVEVVPGSATLPHLARQVSDFCAACALEAVVLN 182
                 *********************************************************************999999975 PP

>> 3HCDH  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   8.7e-22     1e-18       1      97 []     187     285 ..     187     285 .. 0.93

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 8.7e-22
                 TTTHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHS...SCHHHHHHHHHHHHHHHHHHHHHHHTTTHGGHH-HHHHHHHHTT--BGGGTBSSSB CS
       3HCDH   1 GFvvnRvlapllneavrlveegvaspediDaamrlglGlp...mGpfelldlvgldvakkilevlaeelgerayapsplleklveagrlgrktgkgfyk 96 
                 GFv nR++++ll+ea+++v+ g+aspe +D++mr++lG +   +Gp+e +d++gl ++++i ++l  el     +   l+ + v  g+ g ++ +gfy+
  CTQ28494.1 187 GFVGNRLQFALLREALHIVHSGIASPEVVDQVMRASLGRRyamVGPLEAADMTGLATVQDICQHLLPELASG-TEMMSLVAEKVARGDTGARSRQGFYR 284
                 9*************************************997778*******************999997777.333579*******************8 PP

                 C CS
       3HCDH  97 y 97 
                 +
  CTQ28494.1 285 W 285
                 7 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   3.3e-08   3.9e-05       2     109 ..       6     124 ..       5     138 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 3.3e-08
                     EEEE--SHHHHHHHHHHHTTT--EEEE-S-H...........HHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHH..H CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaenghevrlwvree...........elieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqal..r 83 
                      avlGaG  G  +A+++a++gh vrl+  ++           + ++e++++ +     +  ++ + l+ t+ l +al++a++++ ++P      +
      CTQ28494.1   6 LAVLGAGLMGVGIACHFARHGHAVRLYDTDPqrlaevpavasAILRELEASGQQDPADR-DAVLARLTPTPTL-NALADATLLIEAIPERLAlkH 98 
                     59*****************************9999999666666666666655555434.4555677877777.57888*********9754224 PP

                     HHHHHHCCC--TT-EEEE---SEET. CS
  NAD_Gly3P_dh_N  84 evlkklkgllkkkailvsliKGieeg 109
                        ++l++l+++++i++s + G+ ++
      CTQ28494.1  99 ALYAELETLIADETIIASNTSGLPPD 124
                     5678999999*****99999999654 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.7e-07    0.0002       2      50 ..       6      54 ..       5     121 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.7e-07
                   EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHH CS
  NAD_binding_2  2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesie 50
                   ++++G G MG  +a +++++g+ v +y+ +++++ e+ a    ++ ++e
     CTQ28494.1  6 LAVLGAGLMGVGIACHFARHGHAVRLYDTDPQRLAEVPAVASAILRELE 54
                   799****************************999998776644444444 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   7.7e-06    0.0092       2      36 ..       7      42 ..       6      60 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.7e-06
                EEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHH CS
        ApbA  2 ailGaGaiGsllaakLakagadvtlilrsr.rleal 36
                a+lGaG +G  +a++ a++g+ v l++ ++ rl+++
  CTQ28494.1  7 AVLGAGLMGVGIACHFARHGHAVRLYDTDPqRLAEV 42
                79*************************999888765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   9.3e-06     0.011     144     192 ..       5      52 ..       2      59 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.3e-06
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsaaleea 192
                  r++v G+G+ Gv +A+++a+ g+ v l +  ++ l +++  +sa+  ++
   CTQ28494.1   5 RLAVLGAGLMGVGIACHFARHGHAVRLYDTDPQRLAEVPAVASAI-LRE 52 
                  799********************9999999999986565544444.444 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.2e-05     0.014       1      47 [.       5      47 ..       5     114 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg 47
                   +++++GaG mg ++a  ++++g   h +++  + +p++++e  + ++
     CTQ28494.1  5 RLAVLGAGLMGVGIACHFARHG---HAVRLY-DTDPQRLAEVPAVAS 47
                   689*******************...****55.******999766555 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.4e-05     0.017       1      29 [.       8      36 ..       8      38 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.4e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   ++GaGl G  +A++ a++g+ v l+++ +
     CTQ28494.1  8 VLGAGLMGVGIACHFARHGHAVRLYDTDP 36
                   89************************876 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.2e-05     0.015       1      51 [.       5      54 ..       5      58 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHH CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqekle 51
                +++v+G+G+ g+  A+ +a++g+ V + +  ++ l ++ +++++++ ++le
  CTQ28494.1  5 RLAVLGAGLMGVGIACHFARHGHAVRLYDTDPQRL-AEVPAVASAILRELE 54
                689***************************99999.444555555555555 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.3e-05     0.015       2      46 ..       6      52 ..       5     141 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-05
                EEEECTSHHHHHHHHHHHHTT..EEEEESSSS.TTSSGGGSSEEEEES CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllekgdi.agsgaSgrnsgllhs 46
                +++ G+G +G+++A + ar+g  V l++ +++ ++ +    +s++l+ 
  CTQ28494.1  6 LAVLGAGLMGVGIACHFARHGhaVRLYDTDPQrLA-EVPAVASAILRE 52
                68******************99******9954133.666666666655 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.1e-05     0.025       2      45 ..       5      48 ..       4      55 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.1e-05
                    EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-S CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvDideekvdklnsgkip 45
                    +++v+G+G +G+  a  +a++gh v + D d ++ +++ +  + 
      CTQ28494.1  5 RLAVLGAGLMGVGIACHFARHGHAVRLYDTDPQRLAEVPAVASA 48
                    689*******************************9988766555 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   4.1e-05     0.049       3      43 ..       7      47 ..       5      60 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.1e-05
                EEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSE CS
        GIDA  3 iViGgGhAGceAAlaaarlGakvlLithkldtiaelsCnps 43
                 V+G+G+ G+  A + ar G+ v L+  + +++ae++   s
  CTQ28494.1  7 AVLGAGLMGVGIACHFARHGHAVRLYDTDPQRLAEVPAVAS 47
                79********************************9975554 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.5e-05     0.077      17      55 ..      16     169 ..      14     283 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.5e-05
                 HHHHHHHHHTT--EEEEEEEESSCCCCH.......HTTEB-HHHH...................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxx...................................................... RF
        CbiA  17 anLaralarrglrVllvDaDpqannlai.......leglendiep...................................................... 54 
                 +++a+ +ar+g+ V l+D+Dpq+ + ++       l        +                                                      
  CTQ28494.1  16 VGIACHFARHGHAVRLYDTDPQRLA-EVpavasaiL--------Releasgqqdpadrdavlarltptptlnaladatllieaiperlalkhalyaele 105
                 57999*****************655.3334433321........0233345556677788888888888888888766666666666666666666666 PP

                 ...............................................................C CS
                 ...............................................................x RF
        CbiA  55 ...............................................................d 55 
                                                                                d
  CTQ28494.1 106 tliadetiiasntsglppdrlaqgmrhperlliahfwhpphliplvevvpgsatlphlarqvsD 169
                 6666666666666666666666666666666666666666666666555555544444444440 PP

>> Regnase_1_C  Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0       0.2   2.4e+02      33      39 ..      34      40 ..      33      52 .. 0.83
   2 ?    8.0   0.0    0.0019       2.3       2      27 ..     195     220 ..     194     222 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.2
  Regnase_1_C 33 lDaQeLA 39
                 +D+Q+LA
   CTQ28494.1 34 TDPQRLA 40
                 7*****8 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0019
  Regnase_1_C   2 yqdeRekVfinLCgiFppdLVraVMa 27 
                  ++ +Re  +i   gi +p++V++VM 
   CTQ28494.1 195 FALLREALHIVHSGIASPEVVDQVMR 220
                  666899999999*************6 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.16      30      77 ..       5      52 ..       3     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEE CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvev 77
                 +  v+G+G  G+  +   ++ g  V+++D++p+rl ++ ++ + +++ 
   CTQ28494.1  5 RLAVLGAGLMGVGIACHFARHGHAVRLYDTDPQRLAEVPAVASAILRE 52
                 568**********999999*******************9977765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2170.05
//
Query:       CTQ28495.1  [L=463]
Description: Uncharacterized transporter YxjC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   11.8   0.1       0.14   11.8   0.1    4.1  5  DUF4131   Domain of unknown function (DUF4131)
       0.34   10.4   0.0       0.34   10.4   0.0    3.1  4  DUF3169   Protein of unknown function (DUF3169)


Domain annotation for each model (and alignments):
>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   5.0      0.64   5.7e+03       8      41 ..       4      32 ..       1      39 [. 0.36
   2 ?   -1.8   2.1      0.23   2.1e+03      26      47 ..      84     114 ..      60     153 .. 0.60
   3 ?   11.8   0.1   1.6e-05      0.14       2      75 ..     177     278 ..     176     287 .. 0.56
   4 ?   -0.1   0.6      0.07   6.2e+02       8      27 ..     286     310 ..     278     358 .. 0.55
   5 ?   -3.9   0.7         1   9.3e+03      30      39 ..     436     445 ..     419     459 .. 0.33

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.64
     DUF4131  8 vllalllllllllllllrrrprrrvlllllllll 41
                ++ +++l+ll+l++++      + v+l++ +++l
  CTQ28495.1  4 IIALAALALLMLAAYRG-----YSVILFAPIAAL 32
                33334444444443332.....222333322222 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.23
     DUF4131  26 r.........rprrrvllllllllllallgf 47 
                 +          +r  + +++l+++ll  +g+
  CTQ28495.1  84 SivaaairilGRRHAIPVIVLVCALLTYGGV 114
                 3444444442334444444444444444444 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 1.6e-05
     DUF4131   2 glplalvllalllllllllllllrr.....rprrrv.......................llllllllllallgfalrapqpnandlsqlles....gqe 68 
                 +  ++l l+++l+++++ ll+l r+     +    +                       l++++ lll+++l ++++ + p+    s+ l++    +  
  CTQ28495.1 177 WAAPWLGLIGSLFIIIFGLLWLERQrrkaqA----RgegygtdlqnepetpddidlphpLIAIAPLLLVGVLNLLFTHWIPQWYGASHELNLpglaKPV 271
                 67799****************9866655550....1555555555555555555555553333333333333333333333333344444433343555 PP

     DUF4131  69 viveGvv 75 
                 v+ +G++
  CTQ28495.1 272 VTEVGKI 278
                 5555666 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.07
     DUF4131   8 vllalllllllllllllrr.....r 27 
                  +l+++++l l++++++ r      
  CTQ28495.1 286 AALLSGIVLVLVCGYRNIRgrlaeG 310
                 3444444444444444443655432 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 1
     DUF4131  30 rrvlllllll 39 
                 +  +++++++
  CTQ28495.1 436 YGGIFAITVI 445
                 2222222222 PP

>> DUF3169  Protein of unknown function (DUF3169)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   3.7     0.023     2e+02       3      63 ..      54     109 ..      52     123 .. 0.76
   2 ?   10.4   0.0   3.8e-05      0.34      21     125 ..     147     253 ..     145     303 .. 0.80
   3 ?   -3.1   0.2      0.48   4.3e+03       8      31 ..     360     383 ..     358     400 .. 0.70
   4 ?   -3.8   0.5      0.78     7e+03     214     227 ..     447     460 ..     434     462 .. 0.50

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.023
     DUF3169   3 allkfillmliggliGgiiGfllgafeaekgleelsaalkelllligskilpllliiavlv 63 
                 +++ f++l +   l+G+++G l+ +          s + +++ +l +++++p++++++ l+
  CTQ28495.1  54 KMVGFVKLYFPVFLLGAVFGKLIELSGFS-----RSIVAAAIRILGRRHAIPVIVLVCALL 109
                 677889999999999*****999665333.....344456777888899******977665 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 3.8e-05
     DUF3169  21 iGfllgafeaekgleelsaalkelllligskilpllliiavlvviis..vvflrkakkllkkwdeeddeeseeeyeqiekklsiglilssvslilsfll 117
                 +G+++ +++a  g+ ++++++ + ++ ++++++p+l +i  l +ii+  +++ r+ +k +++ ++   + ++e +   +  l  +li++  +l + +l+
  CTQ28495.1 147 LGAFSFTMDALPGTPQIQNIIPTSFFGTNAWAAPWLGLIGSLFIIIFglLWLERQRRKAQARGEGYGTDLQNEPETPDDIDLPHPLIAIAPLLLVGVLN 245
                 688888899999999999999999**************9999999998888888888888888888777776655555667777777777777777777 PP

     DUF3169 118 ilasyslk 125
                 +l++ +  
  CTQ28495.1 246 LLFTHWIP 253
                 77766655 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.48
     DUF3169   8 illmliggliGgiiGfllgafeae 31 
                 i +++++g++G   G+++ a+ a 
  CTQ28495.1 360 ISVTVLAGITGSASGGMSIALAAM 383
                 566788899998888888666443 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 0.78
     DUF3169 214 llivlfllslvfgt 227
                  l+vlf++++++ t
  CTQ28495.1 447 SLAVLFVIATFYVT 460
                 34444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3457.43
//
Query:       CTQ28496.1  [L=256]
Description: D-beta-hydroxybutyrate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-56  191.8   0.7    2.1e-56  191.1   0.7    1.2  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    3.6e-52  176.7   0.5    4.5e-52  176.4   0.5    1.1  1  adh_short     short chain dehydrogenase
    3.5e-09   36.8   0.8    5.1e-09   36.3   0.8    1.2  1  KR            KR domain
     0.0078   15.7   0.2      0.022   14.2   0.2    1.8  1  Epimerase     NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.14   11.5   0.0    1.1  1  DUF1776       Fungal family of unknown function (DUF1776)


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.1   0.7   5.9e-60   2.1e-56       1     233 [.      12     253 ..      12     254 .. 0.90

  Alignments for each domain:
  == domain 1  score: 191.1 bits;  conditional E-value: 5.9e-60
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                   G  sgIG +iAk la++Ga++vl  +++++ ++ +e+a+ ++   +  +D +d  q+ea++  ++++fg++Di++nnagi +   +p+++++ ++++
    CTQ28496.1  12 GSTSGIGLGIAKVLAQAGAQLVLNGFGDSS-HARAEVAALGKIPgYHDADLRDVGQIEAMMHYAESTFGGVDIVINNAGIQHV--APVEQFPVDKWN 105
                   5679*************************9.445555554444467*************************************..************ PP

                   HHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTT...... CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikg...... 184
                   ++l++nl s+f++++ alp m+++  g+i+n++sv++ ++ ++ +ay aaK+a+++lt+++A e ++ gi++Na++pg++ T++ +++i++      
    CTQ28496.1 106 DILAINLSSVFHTTRLALPGMRQRnwGRIINIASVHGLVASKEKSAYVAAKHAVVGLTKTVALETARSGITCNAICPGWVLTPLvQQQIDKriaegv 202
                   *******************5555449********************************************************995555555555565 PP

                   ..HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 185 ..fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                     +++  + l++++p g+++tp++ +e+alfL+sd+a+ + G+   +DgG+
    CTQ28496.1 203 dpEQASAQLLAEKQPSGEFVTPQQLGEMALFLCSDAAAQVRGAAWNMDGGW 253
                   43555777789***************************************6 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.4   0.5   1.2e-55   4.5e-52       1     192 [.       6     195 ..       6     198 .. 0.94

  Alignments for each domain:
  == domain 1  score: 176.4 bits;  conditional E-value: 1.2e-55
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 k++lvtG +sGIG+ iak la++Ga++v+ +  ++   ++ +e+ ++g+   +  +D++d  ++ea++  a++ +g++d+++nNAGi++++p++++  +
  CTQ28496.1   6 KTALVTGSTSGIGLGIAKVLAQAGAQLVLNGFGDS--SHARAEVAALGKIPGYHDADLRDVGQIEAMMHYAESTFGGVDIVINNAGIQHVAPVEQFPVD 102
                 79***************************666644..45777777777778899********************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCT CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelre 192
                 +w++++++Nl +vf++tr++lp m ++++GrI+n++Sv+g+v++++ +aY A+K+av+glt+++a e a++gi++na++PG v T++++++ +
  CTQ28496.1 103 KWNDILAINLSSVFHTTRLALPGMRQRNWGRIINIASVHGLVASKEKSAYVAAKHAVVGLTKTVALETARSGITCNAICPGWVLTPLVQQQID 195
                 ***************************************************************************************998765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.8   1.4e-12   5.1e-09       2     158 ..       7     161 ..       6     178 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.4e-12
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 t l+tG + g+Gl +a+ la+ ga+ lvl +     +++     ae++alg    + +aD+ d  ++ea+++ ++++++ +  vi+ Ag+ + +++e+ 
  CTQ28496.1   7 TALVTGSTSGIGLGIAKVLAQAGAQ-LVLNGFG--DSSH---ARAEVAALGKIPGYHDADLRDVGQIEAMMHYAESTFGGVDIVINNAGIQHVAPVEQF 99 
                 579********************85.8999888..3333...44667777888899******************************************* PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaNaflDa 158
                   ++++ +la  ++ + +  +l  +    ++   ++ ++S+ gl+ s+++++Y aa + + +
  CTQ28496.1 100 PVDKWNDILAINLSSVFHTTRLALPgmrqRNWGRIINIASVHGLVASKEKSAYVAAKHAVVG 161
                 **********999999998888655565599999**********************887655 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   6.1e-06     0.022       1      96 [.       8     112 ..       8     248 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.1e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHHHH...HH..T-SEEEE--S---HHHHHHSHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl....elveldltdrsalerlfk...ee..qpdavihlAavggvaassedpadfiek 90 
                 +lVtG t  iG  ++k l+++g +++      s++++a+ + l      +++dl+d  ++e++++   ++  ++d+vi+ A++++va   + p d +++
  CTQ28496.1   8 ALVTGSTSGIGLGIAKVLAQAGAQLVLNGFGDSSHARAEVAALgkipGYHDADLRDVGQIEAMMHyaeSTfgGVDIVINNAGIQHVAPVEQFPVDKWND 106
                 59********************997766666566666666666889*99*******996666654111444789************9999999998877 PP

                 HTHHHH CS
   Epimerase  91 nlqgtl 96 
                  l+++l
  CTQ28496.1 107 ILAINL 112
                 666665 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.9e-05      0.14     105     155 ..      93     143 ..      83     181 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.9e-05
     DUF1776 105 tgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsi 155
                 + p+e+ p+++w++ l  +l+s + t+   lp +++r+  ++  i   +++
  CTQ28496.1  93 VAPVEQFPVDKWNDILAINLSSVFHTTRLALPGMRQRNWGRIINIASVHGL 143
                 68**********************************773333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2024.37
//
Query:       CTQ28497.1  [L=290]
Description: HTH-type transcriptional regulator BudR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-33  115.3   0.2    3.1e-33  114.9   0.2    1.2  1  LysR_substrate  LysR substrate binding domain
    6.7e-26   90.0   0.5    1.7e-25   88.7   0.5    1.7  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0049   16.4   0.0      0.011   15.3   0.0    1.6  1  HTH_24          Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.091   12.6   0.0        1.3    8.9   0.0    2.4  2  HTH_5           Bacterial regulatory protein, arsR family
      0.096   12.5   0.0       0.21   11.4   0.0    1.6  1  HTH_10          HTH DNA binding domain
       0.15   11.9   0.0       0.43   10.4   0.0    1.8  2  HTH_8           Bacterial regulatory protein, Fis family
       0.17   12.0   0.0       0.36   10.9   0.0    1.5  1  EFG_II          Elongation Factor G, domain II


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.2   1.2e-36   3.1e-33       3     203 ..      88     289 ..      86     290 .] 0.94

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 1.2e-36
                     TSCEEEEEEEECCCH.HHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGGSSS CS
  LysR_substrate   3 glrgrLrigapptla.ryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLargep 95 
                     g  g+L++g++++ a +  +  ll rf+  +P+v+l+  e++ ++l  +l e elD+a++++p+ ++  +  r + eep+v+++++d pLa +  
      CTQ28497.1  88 GMNGSLSLGITSSDAfHPQIFTLLHRFQLDHPGVTLHQMEDNMANLMTALGEAELDIAFVRLPCeSSKAFNLRIIDEEPMVIALPRDNPLATQPT 182
                     6679999999977776778899******************************************999999999999******************* PP

                     ECGGGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEE CS
  LysR_substrate  96 vsledLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyr 188
                     ++le+L+d   il++++ +  l +l+ + + +ag++ ++a++++++++ l++v aG G+al+p+s+    ++++++++ pl++ pl+ ++++++r
      CTQ28497.1 183 LALEQLRDVAPILFPREVApgLYELVYNSCLRAGIDMERAWQSSQISSSLSMVNAGFGFALVPQSM--TCIQQPNVSYHPLSGAPLKTDIAIAWR 275
                     ********9999998777779*********************************************..899************************ PP

                     TTCCCHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidf 203
                     + + +s++v++f+++
      CTQ28497.1 276 RFE-RSRTVKRFLAM 289
                     **9.********976 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.5   6.6e-29   1.7e-25       1      60 []       3      62 ..       3      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 6.6e-29
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr lr+fvava++++ft+AA+eLg+sqp +s+qi+rLE+e+g+pLf R +rg++LTeaGe
  CTQ28497.1  3 LRYLRYFVAVARTRHFTQAAKELGISQPPLSQQIQRLEREVGTPLFRRLTRGVELTEAGE 62
                688********************************************************7 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   4.3e-06     0.011      23      44 ..      21      42 ..      18      42 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.3e-06
      HTH_24 23 LAerlglSpstvnrrlkrLeee 44
                 A++lg+S+++++++++rLe+e
  CTQ28497.1 21 AAKELGISQPPLSQQIQRLERE 42
                59******************86 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00051       1.3      18      41 ..      18      41 ..      11      42 .. 0.88
   2 ?    0.6   0.0      0.21   5.3e+02      27      35 ..     251     259 ..     248     259 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00051
                HHHHHHHHTS-HHHHHHHHHHHHH CS
       HTH_5 18 vcelaeelglsqstvShHLkkLre 41
                +++ a+elg+sq+ +S++  +L+ 
  CTQ28497.1 18 FTQAAKELGISQPPLSQQIQRLER 41
                67779*************999985 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.21
                 S-HHHHHHH CS
       HTH_5  27 lsqstvShH 35 
                 + q++vS+H
  CTQ28497.1 251 IQQPNVSYH 259
                 67******* PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.1e-05      0.21      21      51 ..      13      43 ..       8      45 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.1e-05
      HTH_10 21 PRrvtlkeLAkelGIskstlsehLrkaeskl 51
                 R+ +  + AkelGIs++ ls+ +++ e+ +
  CTQ28497.1 13 ARTRHFTQAAKELGISQPPLSQQIQRLEREV 43
                678888899*****************99876 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00017      0.43      13      35 ..      11      32 ..      10      39 .. 0.78
   2 ?   -2.3   0.0       1.6   4.1e+03      12      19 ..      77      84 ..      76      85 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00017
                HHHHTTT-HHHHHHHHTS-HHHH CS
       HTH_8 13 ALertgGnkskAArlLGisRrtL 35
                A +rt+ + ++AA++LGis   L
  CTQ28497.1 11 AVARTR-HFTQAAKELGISQPPL 32
                667888.99*********96655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
                HHHHHTTT CS
       HTH_8 12 aALertgG 19
                aALe+++G
  CTQ28497.1 77 AALEKAKG 84
                79**9998 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014      0.36      19      63 ..     105     149 ..      93     159 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
      EFG_II  19 dklskaLarlleEDptlrverdeeTketilsGmGelHleivverl 63 
                  ++ + L+r++ + p +++++ e+    +++++Ge+ l+i+  rl
  CTQ28497.1 105 PQIFTLLHRFQLDHPGVTLHQMEDNMANLMTALGEAELDIAFVRL 149
                 578899***********************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2350.43
//
Query:       CTQ28498.1  [L=259]
Description: Alpha-acetolactate decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-85  285.2   0.1    3.1e-85  284.9   0.1    1.0  1  AAL_decarboxy  Alpha-acetolactate decarboxylase
  ------ inclusion threshold ------
      0.057   13.4   0.0      0.099   12.6   0.0    1.3  1  DUF3748        Protein of unknown function (DUF3748)


Domain annotation for each model (and alignments):
>> AAL_decarboxy  Alpha-acetolactate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.9   0.1   3.5e-89   3.1e-85       1     218 [.      29     246 ..      29     247 .. 0.99

  Alignments for each domain:
  == domain 1  score: 284.9 bits;  conditional E-value: 3.5e-89
  AAL_decarboxy   1 lyqvstlsaLmegvyegtltvsellkhGdfGlGTfeeldGEliildgkvYqlksdgsvrevddeektPFavvtkfepektvklkealskeeleeal 96 
                    lyq+s++saL++gvyeg++t+++llkhGdfGlGTf+eldGEli++ ++vYql++dgs+r++++e+ktPFav+t f+p+ ++++++++s+++l+e +
     CTQ28498.1  29 LYQTSLMSALLSGVYEGSTTIADLLKHGDFGLGTFNELDGELIAFSSQVYQLRADGSARKAQPEQKTPFAVMTWFQPQYRKTFDHPVSRQQLHEVI 124
                    7*********************************************************************************************** PP

  AAL_decarboxy  97 eellpskNlfyairidGtfksvkvRsvpkqekpyeplaevakkqsefefenveGtlvGfrtPeylqginvaGlHlHFisddrkfGGHvldfeleev 192
                    ++++ps+Nlf+a+ridG+f++ ++R+vp+q+ py+ +++v+++q++f+f++ eG lvGfrtP+++qginvaG+H HFi+ddrk GGH+ld++l+++
     CTQ28498.1 125 DQQIPSDNLFCALRIDGHFRHAHTRTVPRQTPPYRAMTDVLDDQPVFRFNQREGVLVGFRTPQHMQGINVAGYHEHFITDDRKGGGHLLDYQLDHG 220
                    ************************************************************************************************ PP

  AAL_decarboxy 193 eveiakisklelelpedeeFeeadlk 218
                     +++ +i+kl ++lp d++F +a+l+
     CTQ28498.1 221 VLTFGEIHKLMIDLPADSAFLQANLH 246
                    ***********************996 PP

>> DUF3748  Protein of unknown function (DUF3748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.1e-05     0.099      26      94 ..     167     235 ..     160     251 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
     DUF3748  26 eqWkydfsrrrGviveeaepekastldalditpPytpGaLrGGshvhvfsgdgewvsftynDhvlkeld 94 
                 +q  + f++r+Gv+v  ++p++++ ++   + + + +   +GG h   ++ d   ++f    +++ +l 
  CTQ28498.1 167 DQPVFRFNQREGVLVGFRTPQHMQGINVAGYHEHFITDDRKGGGHLLDYQLDHGVLTFGEIHKLMIDLP 235
                 555689**********************************************99999987777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2116.11
//
Query:       CTQ28499.1  [L=559]
Description: Acetolactate synthase, catabolic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-53  179.1   2.1    4.6e-50  169.6   1.6    2.5  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    2.5e-39  134.5   0.5    6.2e-39  133.2   0.1    1.9  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    6.4e-31  106.9   0.0    4.5e-30  104.2   0.0    2.2  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.21   11.3   0.0    1.4  1  CO_dh         CO dehydrogenase beta subunit/acetyl-CoA syntha
        0.2   12.0   1.0       0.48   10.7   0.0    2.0  2  HTH_18        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.6   1.6   1.3e-53   4.6e-50       3     168 ..      13     176 ..      11     179 .. 0.98
   2 !    7.4   0.0   0.00083         3      93     163 ..     479     543 ..     435     549 .. 0.84

  Alignments for each domain:
  == domain 1  score: 169.6 bits;  conditional E-value: 1.3e-53
                   HHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEEE CS
  TPP_enzyme_N   3 vaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsgd 99 
                   +a+++v  L+a+gv++vfg+pG  i +++d+l ++ +ir++ +rhE +aaf+A ++ r+tgk gv+lvtsgpG  n++t++a+A++++ P+++l g 
    CTQ28499.1  13 GADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDS-SIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGA 108
                   89*********************************.6************************************************************ PP

                   --CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EE CS
  TPP_enzyme_N 100 rptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleev 168
                   +++++  ++v q  +d +a+f pvtkya++vt p++l+e++  A+r+a +grpg ++++lp+dv++ +v
    CTQ28499.1 109 VKRADKAKQVHQ-SMDTVAMFSPVTKYAVEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPV 176
                   *******99999.***************************************************99887 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00083
                   EEEEEEE--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHH CS
  TPP_enzyme_N  93 llvlsgdrptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdv 163
                   ++++  ++++++ + gv  + +d +a ++++    + v+s+e+l+++lr A+++      gP+++++p d 
    CTQ28499.1 479 MVAIQEEKKYQRLS-GVEFGPMDFKAYAESFGAKGFAVESAEALEPTLRAAMDVD-----GPAVVAIPVDY 543
                   55555555555555.55555889999999***99*****************9999.....********996 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.7   2.5e+03     123     143 ..     132     152 ..      86     165 .. 0.59
   2 !  133.2   0.1   1.7e-42   6.2e-39       1     152 [.     393     538 ..     393     539 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.7
                   EEEEESSH.HHHHHHHHHHHH CS
  TPP_enzyme_C 123 kgarvekadveeleealkeal 143
                   + + ve++ ++ l+e++  a+
    CTQ28499.1 132 TKYAVEVTAPDALAEVVSNAF 152
                   323444555577777777777 PP

  == domain 2  score: 133.2 bits;  conditional E-value: 1.7e-42
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   d+G++ +w+ar+l   r r+++ s+g  tmG++lp+AiGa l +p+r+vv+++GDGgfl + +el+tavr +++++++++ ++gy+m+  q+e++++
    CTQ28499.1 393 DMGSFHIWIARYLYSFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQ 489
                   89**********99999*******************************************************************************7 PP

                   CTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEE CS
  TPP_enzyme_C  98 krksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpalie 152
                    r sg++   + p+df ++ae++Gakg+ ve+a  e le++l++a++ +gpa++ 
    CTQ28499.1 490 -RLSGVE---FGPMDFKAYAESFGAKGFAVESA--EALEPTLRAAMDVDGPAVVA 538
                   .788888...99*****************9***..******************96 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.22     8e+02      13      36 ..     100     123 ..      95     134 .. 0.83
   2 !  104.2   0.0   1.3e-33   4.5e-30       1     137 []     197     331 ..     197     331 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.22
                   SEEEEE-CHHCHTTGHHHHHHHHH CS
  TPP_enzyme_M  13 rpvilvGggvarsgaseelrelae 36 
                    pv+ +Gg v+r++ ++++++  +
    CTQ28499.1 100 DPVVALGGAVKRADKAKQVHQSMD 123
                   6999********999999887655 PP

  == domain 2  score: 104.2 bits;  conditional E-value: 1.3e-33
                   HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTS.TTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedh.plylgmlglhgskaanealeeaDlvlalGarfddirttgs 96 
                   i+++a+l+++ak+p++l+G  +++ + s++lr+l+e+ +iPv++t++++g++++d+  +++g++gl+ ++a++++l+ aDlv+++G  ++    +++
    CTQ28499.1 197 IDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNfSRFAGRVGLFNNQAGDRLLQLADLVICIG--YSP---VEY 288
                   799**************************************************98868899*************************..555...446 PP

                   TT.TTTTT-.EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  97 ep.efapea.kiihididpaeigknyqvdlaivgdvketleaL 137
                   ep  +++ + +++hid+ pa   +ny++d+++vgd++ tl++L
    CTQ28499.1 289 EPaMWNSGNaTLVHIDVLPAYEERNYTPDVELVGDIAGTLNKL 331
                   6668888888******************************987 PP

>> CO_dh  CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.9e-05      0.21      23      70 ..     195     242 ..     182     283 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.9e-05
                 --SHHHHHHHHHSSSEEEEE-S--.-HH.HHHHHHHHHTSSSEEEEET CS
       CO_dh  23 ealkvvakmikkakrPllivGpqvlkaeneeakekkilekklkvvata 70 
                  a+ +vak+i +ak+P+ ++G  + + en  a  +  +  +++v  t 
  CTQ28499.1 195 DAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTY 242
                 56789****************************999999999998875 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00013      0.48      35      67 ..     225     257 ..     224     260 .. 0.89
   2 ?   -1.8   0.2       1.1   3.9e+03      10      48 ..     352     390 ..     349     392 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00013
                 HHHHHHHSSS---HHHHHHHTT-S-HHHHHHHH CS
      HTH_18  35 rArrlLlentglsvaeiAlalGFsdlsrFsraf 67 
                 +A r+Lle+++ +v+ ++ a+G  ++ +Fsr+ 
  CTQ28499.1 225 KALRRLLETSHIPVTSTYQAAGAVNQDNFSRFA 257
                 5778888999********************985 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
                 HHHHHHHHHHTSS-HHHHHHH.HHHHHHHHHHHSSS---H CS
      HTH_18  10 rtLqrlfkrvlgltpkeylrr.lRlerArrlLlentglsv 48 
                 r+ qr + ++ g    +++ + lR+ rA+++++ n++ ++
  CTQ28499.1 352 RQHQRELLDRRGAQLNQFALHpLRIVRAMQDIV-NSDVTL 390
                 555666666677777776544388999999887.477766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.20s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 4494.43
//
Query:       CTQ28500.1  [L=256]
Description: Diacetyl reductase ((S)-acetoin forming) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-63  211.4   2.7    9.9e-63  211.1   2.7    1.0  1  adh_short        short chain dehydrogenase
    5.7e-61  206.1   2.4    7.6e-61  205.6   2.4    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.7e-13   50.9   0.9    2.3e-13   50.4   0.9    1.2  1  KR               KR domain
    0.00015   22.1   0.5    0.00027   21.2   0.5    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0011   18.1   0.4     0.0014   17.7   0.4    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
  ------ inclusion threshold ------
      0.015   15.2   1.6      0.025   14.4   1.6    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.081   13.5   1.7       0.17   12.5   1.7    1.5  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
       0.12   11.8   0.9       0.17   11.3   0.9    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.1   2.7   4.4e-66   9.9e-63       1     193 [.       3     196 ..       3     198 .. 0.98

  Alignments for each domain:
  == domain 1  score: 211.1 bits;  conditional E-value: 4.4e-66
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 kv+lvtGa++GIG+aia +l+++G+ v+++d++++++++va+e++++g +a+a++vDv+dr++v a+ve+a+k lg+ dv+vnNAG++ s+p+++++ e
  CTQ28500.1   3 KVALVTGAGQGIGKAIALRLVRDGFAVAIADYNDATAKAVASEINQAGGRAMAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPE 101
                 89************************************************************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short 100 ewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelrek 193
                  +++v+++N++gv++ ++a+++a++ ++++G+I+n +S+ag+v+++++a+Ys+sK+av+glt+++a++lap gi+vn+ +PG+v+T+m +e+ ++
  CTQ28500.1 102 IVDKVYNINVKGVIWGIQAAVEAFKkEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQ 196
                 ************************9999*************************************************************998765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.6   2.4   3.4e-64   7.6e-61       1     233 [.       9     253 ..       9     254 .. 0.92

  Alignments for each domain:
  == domain 1  score: 205.6 bits;  conditional E-value: 3.4e-64
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   Ga +gIG+aiA +l + G  v+++d+n++  k+ + e+ +++g++ ++++DV+d++qv a+ve++++++g++D++vnnag+ap+  +p+++++ e +
    CTQ28500.1   9 GAGQGIGKAIALRLVRDGFAVAIADYNDATaKAVASEINQAGGRAmAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPS--TPIESITPEIV 103
                   889***************************55555666666666645*************************************..*********** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC...CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTT...HH CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg...gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikg...fd 186
                   d++ ++n+++++  ++aa++++k++   g+i+n  s +++++ p+ ++y+ +K a+ +lt+++A++l+p gi+vN  +pg++kT+++++i++   + 
    CTQ28500.1 104 DKVYNINVKGVIWGIQAAVEAFKKEghgGKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRqvsE- 199
                   ********************88766588***********************************************************999986531. PP

                   H.......HHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 187 e.......lleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   +         +e+++r+ lgrl +pe+va+++ +Las+++ y+tGq l +DgG+
    CTQ28500.1 200 AagkplgyGTAEFAKRITLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGM 253
                   133444546899*****************************************8 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.9     1e-16   2.3e-13       3     155 ..       5     158 ..       4     178 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1e-16
                 EEEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekg.arhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                  l+tG+  g+G+++a  l+++g a  ++       +d+++ka  +e+++ g + ++v++Dvsd+d+v a++e+++++ +    +++ Agv+  +++e+ 
  CTQ28500.1   5 ALVTGAGQGIGKAIALRLVRDGfAVAIAD-----YNDATAKAVASEINQAGGRAMAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESI 98 
                 59********************4444432.....35678888999****************************************************** PP

                 -HHHHHHHHTTTTHHH.HHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHHHH CS
          KR 101 taedleqvlapKvkGa.wnLhelled....esldffvlfSSiagllgsagqanYaaaNaf 155
                 t e +++v++  vkG+ w ++ ++e      +   ++   S ag +g+++ a Y++    
  CTQ28500.1  99 TPEIVDKVYNINVKGViWGIQAAVEAfkkeGHGGKIINACSQAGHVGNPELAVYSSSKFA 158
                 *************99646676666554435677889999***************987655 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.5   1.2e-07   0.00027       2      75 ..       6      85 ..       5      95 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.2e-07
                     EEE--S.HHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH..TTTCEEEEE--TTTHHHHHHHHHTTS.......SEEEE CS
  Sacchrp_dh_NADP  2 liiGaG.svGqavaellarhfdvdaeitvadrskeklealaaka..lgvrfeaialdaenyeavLaallkeg.......dlvvn 75
                     l+ GaG ++G+a+a  l+r +     +++ad +++ ++a+a+++  +g r+ a+++d++++++v aa ++++       d++vn
       CTQ28500.1  6 LVTGAGqGIGKAIALRLVRDGF---AVAIADYNDATAKAVASEInqAGGRAMAVKVDVSDRDQVFAA-VEQArktlggfDVIVN 85
                     67799647***********985...6**************9999999****************6655.4444355666677776 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.4   6.4e-07    0.0014       1     105 [.       6     123 ..       6     148 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 6.4e-07
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlresp..elleelskvnvkk.viegDvtdkdkleeale.......gvdvvihlaslvdvag..klte.. 85 
                 +vtG++  +G+a+  +Lvr +    v ++D ++ +   + +e+++ + +   +++Dv d d++ +a+e       g dv++  a++ +++    +t   
  CTQ28500.1   6 LVTGAGQGIGKAIALRLVRDGF--AVAIADYNDATakAVASEINQAGGRAmAVKVDVSDRDQVFAAVEqarktlgGFDVIVNNAGVAPSTPieSITPei 102
                 69***999************96..6777775544400444555555444469*********99888762222222568999999998776532333312 PP

   3Beta_HSD  86 .deimkvnvkGTrnvleacvk 105
                  d+++++nvkG    ++a+v+
  CTQ28500.1 103 vDKVYNINVKGVIWGIQAAVE 123
                 277888999998777777765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.6   1.1e-05     0.025       4      69 ..       7      72 ..       3      87 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-05
                EE--SC.CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEE CS
     3HCDH_N  4 viGaGt.mGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisf 69
                v GaG+ +G+ ia  +++ g+ V + d +++++++++++i++     + + k++ +++++++a ++ 
  CTQ28500.1  7 VTGAGQgIGKAIALRLVRDGFAVAIADYNDATAKAVASEINQAG-GRAMAVKVDVSDRDQVFAAVEQ 72
                77999779********************************9844.4456677777788888877764 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.7   7.7e-05      0.17       1      70 [.       3      71 ..       3      76 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.7e-05
                   EEEEE.TTSH.HHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.-EEECECHHHHHHH-SEEEE-S- CS
  F420_oxidored  1 kigii.GaGn.mgealasgllaagaqpheivvansrnpekaeelaeelg.vkvtavdneeaaeeadvvvlavk 70
                   k++++ GaG+ +g+a+a++l++ g     + +a + n  +a++ a+e++ ++  a++ +  +++ d v+ av 
     CTQ28500.1  3 KVALVtGAGQgIGKAIALRLVRDG---FAVAIA-DYNDATAKAVASEINqAGGRAMAVKVDVSDRDQVFAAVE 71
                   678888999879************...999988.99*********9998644455555555667888888875 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.9   7.7e-05      0.17       1      84 [.       5     100 ..       5     171 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.7e-05
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HH....HHHHHHHHH.T-SEEEE--S.---HHHHHHSH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrs....alerlfkee.qpdavihlAa.vggvaassedp 84 
                 +lVtGa   iG+a++ +l + g  v   d + +a ++a   ++         v++d+ dr+    a+e++ k+  ++d++++ A+   + + +s++p
  CTQ28500.1   5 ALVTGAGQGIGKAIALRLVRDGFAVAIADYN-DATAKAVASEInqaggraMAVKVDVSDRDqvfaAVEQARKTLgGFDVIVNNAGvAPSTPIESITP 100
                 59****999*************887666655.44444444444679***999*********444444444444456888888888655555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1978.22
//
Query:       CTQ28501.1  [L=187]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-26   91.7   0.0    7.8e-26   91.4   0.0    1.1  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
    2.3e-05   24.6   0.0    2.9e-05   24.3   0.0    1.1  1  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   8.7e-30   7.8e-26       1     137 [.       7     148 ..       7     149 .. 0.88

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 8.7e-30
  Acetyltransf_3   1 RLlLrplteeDlealfelrsdpevmrylpe..pltleeaeewlerawaeeseeegyg.waivl..kdtgviGsvglrdleeedee.aelgymlap 89 
                     RL+Lr++ ++D+++lf+++ dp+++++ p    ++ + a+  ++r w +  e+  +g wai l  +++++iG+ gl  ++ +d+  ++lgy++ +
      CTQ28501.1   7 RLYLRRVNASDIDDLFRIYGDPATNTFNPAgpYPDISHARNVMAR-WLNHWENYRFGnWAISLkeNPDRIIGFGGLSIISYDDTPiMNLGYRFST 100
                     9**************************555546777888888885.666666677778***985444447*******999999889********* PP

  Acetyltransf_3  90 sfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     ++wgkG+ate+++ ++ y f+ l+l ++ av+ +++ aS+++l+k+G+
      CTQ28501.1 101 ESWGKGLATEFAKYAVGYGFDVLKLAEISAVVRPNHLASQKILTKAGL 148
                     ***********************************************7 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.3e-09   2.9e-05       3     116 ..      20     147 ..      18     148 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.3e-09
                     HHHHHHHHHTH......HHHHHHHHHH..HHHHHHSTTC...EEEE..EEET.TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHH CS
  Acetyltransf_1   3 dlvellvesff......ppnedaseee..feesfsleae...gllv..aeed.geliGfisllkipdekggvayieslaVspeyrgkGlGsaLle 83 
                     dl+++++++ +       p++d s+++  ++ ++   ++   g ++   +e+ +++iGf +l++i   +++ + + ++  s e +gkGl+++  +
      CTQ28501.1  20 DLFRIYGDPATntfnpaGPYPDISHARnvMARWLNHWENyrfGNWAisLKENpDRIIGFGGLSIISYDDTPIMNL-GYRFSTESWGKGLATEFAK 113
                     6666677666666666655666666666633332222222336666555555899************55555555.******************* PP

                     HHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTT CS
  Acetyltransf_1  84 aleeraree.gikkivlaveedndaairlYeklG 116
                     +++ + ++   + +i + v++++ a+++ ++k G
      CTQ28501.1 114 YAVGYGFDVlKLAEISAVVRPNHLASQKILTKAG 147
                     *********9999999999999****99999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1573.25
//
Query:       CTQ28502.1  [L=113]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 984.30
//
Query:       CTQ28503.1  [L=83]
Description: hypothetical protein CH1034_230177 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 736.53
//
Query:       CTQ28504.1  [L=280]
Description: Cytochrome c-type biogenesis protein CcmI [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-05   23.3  14.6       0.28   12.1   0.5    5.1  4  TPR_14    Tetratricopeptide repeat
    0.00036   20.7   0.0    0.00068   19.8   0.0    1.5  1  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
      0.005   16.9   0.5       0.27   11.4   0.0    3.1  2  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.02   15.6   4.6       0.02   15.6   4.6    3.2  3  TPR_16    Tetratricopeptide repeat
       0.02   15.5   1.5       0.79   10.5   0.1    3.8  3  TPR_6     Tetratricopeptide repeat
      0.063   13.8  14.8       0.32   11.5   0.1    3.7  4  TPR_19    Tetratricopeptide repeat
       0.12   12.5   8.3        1.5    9.0   1.3    2.9  3  TPR_9     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.012        30      24      44 .]     146     166 ..     131     166 .. 0.83
   2 !   12.1   0.5   0.00011      0.28       3      42 ..     159     198 ..     157     200 .. 0.93
   3 !   12.0   0.5   0.00012       0.3       1      42 [.     191     235 ..     191     238 .. 0.87
   4 !    8.4   4.2    0.0017       4.4       6      43 ..     233     274 ..     231     275 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.012
      TPR_14  24 lrralalaPddaeawlllaql 44 
                 lr  l++ P+d++ w ll++l
  CTQ28504.1 146 LRSHLQDTPNDLAGWQLLGRL 166
                 88899**************97 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00011
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawllla 42 
                  +++l+++ l l d ++Ai ++ ra al  dd++a + +a
  CTQ28504.1 159 GWQLLGRLGLLLNDGETAIGAFGRAHALSGDDPAAAFDYA 198
                 69999******************************99998 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00012
      TPR_14   1 peallalaeallalGdpde...AiallrralalaPddaeawllla 42 
                 p+a  ++a+al ++Gd  +    + llr++ +++P+++ ++ +la
  CTQ28504.1 191 PAAAFDYASALVRAGDSGQvrmGELLLRDLHQRQPNSLPVLEMLA 235
                 68899********987555555********************998 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0017
      TPR_14   6 alaeallalGdpdeAiallrralalaP....ddaeawlllaq 43 
                 +la    +++d+ eA+a+l+++la+ P      a++ ++laq
  CTQ28504.1 233 MLALSAVRNEDYPEAVAALQALLARLPkgdaRRAAIVRQLAQ 274
                 6888899******************99642222445577776 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.7e-07   0.00068       6      81 ..     174     253 ..     170     254 .. 0.94

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.7e-07
                 HHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-...HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   6 knAiflaerllaaetespedayllAlclylngq...ykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 ++Ai  + r++a + ++p +a+ +A +l ++g+         llr++ + +++sl ++  +A +++  + y eA+aaL++
  CTQ28504.1 174 ETAIGAFGRAHALSGDDPAAAFDYASALVRAGDsgqVRMGELLLRDLhQRQPNSLPVLEMLALSAVRNEDYPEAVAALQA 253
                 79****************************98877699999*************************************86 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.096   2.5e+02       8      20 ..     181     193 ..     158     206 .. 0.60
   2 !   11.4   0.0   0.00011      0.27       4      32 ..     231     259 ..     229     260 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.096
       TPR_2   8 GlayyklgdyeeA 20 
                 G+a++ +gd   A
  CTQ28504.1 181 GRAHALSGDDPAA 193
                 4555555555555 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00011
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldP 32 
                 l +l+l++ ++ dy eA++a+++ l+  P
  CTQ28504.1 231 LEMLALSAVRNEDYPEAVAALQALLARLP 259
                 6789*********************9887 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.6   1.7e+04      14      26 ..     113     125 ..     112     132 .. 0.53
   2 ?    5.6   0.6      0.01        26      14      49 ..     174     206 ..     153     208 .. 0.71
   3 ?   15.6   4.6   7.7e-06      0.02       2      33 ..     233     264 ..     232     278 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.6
      TPR_16  14 ddAaaaleaalkr 26 
                 ++A++ + a+l +
  CTQ28504.1 113 QQAERHFPALLQQ 125
                 6677776444443 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.01
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgdaalrqgr 49 
                 + A+ a+ +a ++ +++P   +A++ ++ a+ r+g+
  CTQ28504.1 174 ETAIGAFGRAHALSGDDP---AAAFDYASALVRAGD 206
                 556667777777774444...466666666666665 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 7.7e-06
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPda 33 
                 +la++a+r+ dy++A+aal+a+l+r p+  ++
  CTQ28504.1 233 MLALSAVRNEDYPEAVAALQALLARLPKGDAR 264
                 79***********************9655443 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.74   1.9e+03       7      22 ..     181     197 ..     162     207 .. 0.61
   2 ?    0.5   0.1      0.48   1.2e+03      22      33 .]     216     227 ..     192     227 .. 0.78
   3 ?   10.5   0.1   0.00031      0.79       5      31 ..     233     259 ..     230     260 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.74
                 HHHHHH.HHHHHHHHHH CS
       TPR_6   7 alsyrk.lgdtdkAlea 22 
                 ++++   ++d+++A ++
  CTQ28504.1 181 GRAHALsGDDPAAAFDY 197
                 34444434455555555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.48
                 HHHHHHHH-TT- CS
       TPR_6  22 alerlikeYPdS 33 
                 +l++l ++ P+S
  CTQ28504.1 216 LLRDLHQRQPNS 227
                 688999999998 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00031
                 HHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYP 31 
                 +lals  +  d+ +A++al+ l+ + P
  CTQ28504.1 233 MLALSAVRNEDYPEAVAALQALLARLP 259
                 7999999966*************9977 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       2.5   6.5e+03      13      27 ..      42      57 ..      30      74 .. 0.58
   2 ?   -0.0   0.0      0.51   1.3e+03      18      42 ..     150     174 ..     128     177 .. 0.82
   3 ?   11.5   0.1   0.00013      0.32       6      40 ..     172     206 ..     167     209 .. 0.93
   4 ?    8.5   3.9    0.0011       2.9       2      36 ..     239     277 ..     215     280 .] 0.67

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.5
      TPR_19 13 lleqalqedpk.naea 27
                +l+++ qe  + n+++
  CTQ28504.1 42 RLQELAQERGEdNPAL 57
                4555444433324444 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.51
      TPR_19  18 lqedpknaearllLAeallalgqld 42 
                 lq+ p++++ + lL ++ l l++ +
  CTQ28504.1 150 LQDTPNDLAGWQLLGRLGLLLNDGE 174
                 7889999999999988877777655 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00013
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgq 40 
                 d + A+ ++ +a + + ++++a+ ++A al+ +g+
  CTQ28504.1 172 DGETAIGAFGRAHALSGDDPAAAFDYASALVRAGD 206
                 6679****************************997 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0011
      TPR_19   2 laegdyaeAlalleqalqedpk....naearllLAeall 36 
                 + ++dy eA+a+l+++l+  pk     a++  +LA+a+ 
  CTQ28504.1 239 VRNEDYPEAVAALQALLARLPKgdarRAAIVRQLAQAQQ 277
                 446677777777777776666555556666667777665 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.4    0.0034       8.7      25      66 ..     153     194 ..     134     195 .. 0.90
   2 ?    4.4   0.2     0.016        40      36      67 ..     181     212 ..     165     218 .. 0.78
   3 ?    9.0   1.3   0.00059       1.5      36      71 ..     235     272 ..     221     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0034
       TPR_9  25 aPddpeerrdRGlllaqlGclsaAladLeaylalapdapdae 66 
                  P+d   +   G+l   l++ ++A+ ++ ++ al++d+p+a+
  CTQ28504.1 153 TPNDLAGWQLLGRLGLLLNDGETAIGAFGRAHALSGDDPAAA 194
                 69*************************************985 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.016
       TPR_9  36 GlllaqlGclsaAladLeaylalapdapdaea 67 
                 G+++a +G+  aA++d   +l  a+d  ++++
  CTQ28504.1 181 GRAHALSGDDPAAAFDYASALVRAGDSGQVRM 212
                 77888888888888888888888888888776 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00059
       TPR_9  36 GlllaqlGclsaAladLeaylalap..dapdaeairaq 71 
                 +l  ++ +++ +A+a+L+a la  p  da+ a+ +r++
  CTQ28504.1 235 ALSAVRNEDYPEAVAALQALLARLPkgDARRAAIVRQL 272
                 667788999****************8777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.34
# Mc/sec: 2443.82
//
Query:       CTQ28505.1  [L=152]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-53  180.1   0.1    1.6e-53  179.9   0.1    1.0  1  CcmH      Cytochrome C biogenesis protein
  ------ inclusion threshold ------
      0.044   13.7   0.0      0.073   13.0   0.0    1.3  1  DUF3797   Domain of unknown function (DUF3797)
      0.046   13.6   0.0        1.1    9.2   0.0    2.2  2  LT-IIB    Type II heat-labile enterotoxin , B subunit (LT-IIB
      0.066   13.2   0.0       0.11   12.5   0.0    1.3  1  zf-DNL    DNL zinc finger
      0.069   13.2   0.0      0.096   12.7   0.0    1.3  1  CpXC      CpXC protein
       0.12   12.6   1.3        9.1    6.5   0.1    2.1  2  DUF4381   Domain of unknown function (DUF4381)
       0.12   12.1   0.4       0.33   10.7   0.1    1.9  2  HTH_38    Helix-turn-helix domain
       0.15   11.8   0.0        0.2   11.4   0.0    1.2  1  CG-1      CG-1 domain
        0.2   11.0   3.1        3.1    7.1   0.1    2.1  2  DUF2092   Predicted periplasmic protein (DUF2092)


Domain annotation for each model (and alignments):
>> CcmH  Cytochrome C biogenesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.9   0.1     8e-57   1.6e-53       2     143 .]       8     146 ..       7     146 .. 0.96

  Alignments for each domain:
  == domain 1  score: 179.9 bits;  conditional E-value: 8e-57
                 XXXXXXXXXXXXGGGGS--SSHHHHHHHHHHHHHEE-TTSSS-BTTT--SHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHTTT-EE---XXXXXXXXX CS
        CcmH   2 llllllalaaaaaeedeelkdpaqeararalseeLRClvCqnqsiadSnaelAkdlrrevremlkaGksdeeivdylvarYGdfVlykPpvkastllLW 100
                 ll+l+l+ +a aa+++ ++kd+aqe+ +r+++++LRC++Cqn+siadSna +A+d+r++v+e++++Gk++ +ivdy+varYG+fV+y+Pp++a t+lLW
  CTQ28505.1   8 LLALMLTGQAWAAIDTWQFKDEAQEQAFREITSQLRCPKCQNNSIADSNAMIAADMRQKVYELMQQGKTKGQIVDYMVARYGHFVSYEPPLTAGTVLLW 106
                 68899999******************************************************************************************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        CcmH 101 lgPllllllgllvlllllrrrkkkkaeeeelsaeeearleall 143
                 lgP l++l+g++v+++++rrr   +a   +ls ee++rl+all
  CTQ28505.1 107 LGPGLFVLAGAGVIIARARRRDIPDA---ALSVEERQRLAALL 146
                 *********************95544...4**********997 PP

>> DUF3797  Domain of unknown function (DUF3797)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.7e-05     0.073      15      31 ..      43      59 ..      34      66 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.7e-05
     DUF3797 15 qCPeCgNnkvlNsegkv 31
                 CP+C+Nn +  s++ +
  CTQ28505.1 43 RCPKCQNNSIADSNAMI 59
                7************9987 PP

>> LT-IIB  Type II heat-labile enterotoxin , B subunit (LT-IIB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.089   1.8e+02      11      34 ..       7      31 ..       2      60 .. 0.71
   2 ?    9.2   0.0   0.00053       1.1      59      97 ..     110     147 ..     107     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.089
                XXXXXXXXXXXXX---HH.HHHHHH CS
      LT-IIB 11 vlmaallsvqvyagvsef.fkdicn 34
                +l+a +l++q++a +  + fkd  +
  CTQ28505.1  7 ILLALMLTGQAWAAIDTWqFKDEAQ 31
                5667788999999987643777654 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00053
                 EEEEEETTS-EEEE---SSTTHHHHHHHHHHHHHHHHHH CS
      LT-IIB  59 giyvvsstggvwrisrakdypdnvlsaeirkiamaavls 97 
                 g++v++ +g +   +r +d pd  ls e r+  +aa+l 
  CTQ28505.1 110 GLFVLAGAGVIIARARRRDIPDAALSVEERQR-LAALLQ 147
                 899*******9999**************9874.677765 PP

>> zf-DNL  DNL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.3e-05      0.11      17      60 ..      30      73 ..      24      79 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.3e-05
      zf-DNL 17 iskkaYekGvVivqCpgCknrHliaDnLgwf.edkkktiedilke 60
                 +++a+++ +   +Cp+C+n+  iaD   ++ +d ++++ +++++
  CTQ28505.1 30 AQEQAFREITSQLRCPKCQNNS-IADSNAMIaADMRQKVYELMQQ 73
                5678888888889*******97.7887766659999999999986 PP

>> CpXC  CpXC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.8e-05     0.096       1      33 [.      42      74 ..      12      85 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.8e-05
        CpXC  1 ltCpaCgkefeaeiwtsidadedpelkeklldg 33
                l+Cp+C+++  a+   +i+ad ++++ e + +g
  CTQ28505.1 42 LRCPKCQNNSIADSNAMIAADMRQKVYELMQQG 74
                345555555555555555555555555555444 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0046       9.1      21      65 ..       4      48 ..       2      73 .. 0.67
   2 ?    5.4   0.1    0.0098        20      16      56 ..      97     143 ..      92     152 .] 0.52

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0046
     DUF4381 21 wwlllaalllllllvlalwllrrrkrnrreAlreLaalradeada 65
                  ++l+al+l + +++a+  ++ ++ ++++A re+++  +  + +
  CTQ28505.1  4 VMVILLALMLTGQAWAAIDTWQFKDEAQEQAFREITSQLRCPKCQ 48
                566776777777777777777755556899999998766333333 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0098
     DUF4381  16 PpapGwwlllaalll..llllvlalwllrrrkrn.......rreAlreLa 56 
                 P++ G+ ll ++  l  l+ +++++ + rrr+ +            + La
  CTQ28505.1  97 PLTAGTVLLWLGPGLfvLAGAGVIIARARRRDIPdaalsveE---RQRLA 143
                 667776666655555224455555555555554466664442...33333 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         2   4.1e+03      10      22 ..      64      76 ..      62      80 .. 0.79
   2 ?   10.7   0.1   0.00017      0.33       5      21 ..     134     150 ..     132     151 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2
      HTH_38 10 ReeIerllaeGls 22
                R++ + l ++G++
  CTQ28505.1 64 RQKVYELMQQGKT 76
                7778889999987 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00017
      HTH_38   5 LsleeReeIerllaeGl 21 
                 Ls eeR+++++ll+eG+
  CTQ28505.1 134 LSVEERQRLAALLQEGK 150
                 9***************7 PP

>> CG-1  CG-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0001       0.2      52     114 ..      21      84 ..       5      86 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
        CG-1  52 kDGynwrkkkdgktvrEdhekLkvggeeviecyyahseenetfqrRiYwlldse.ehivLvhYl 114
                  D ++++   +++++rE   +L+  + +  +   +++ + + +++++Y l+++  ++  +v Y+
  CTQ28505.1  21 IDTWQFKDEAQEQAFREITSQLRCPKCQNNSIADSNAMIAADMRQKVYELMQQGkTKGQIVDYM 84 
                 59************************9999999999999************9997788888886 PP

>> DUF2092  Predicted periplasmic protein (DUF2092)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.5    0.0088        17     178     199 ..      15      36 ..       9      41 .. 0.90
   2 ?    7.1   0.1    0.0015       3.1      62     103 ..      48      89 ..      36      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0088
     DUF2092 178 pqytaefsdWnldpeipedtFr 199
                 +q  a + +W++++e +e++Fr
  CTQ28505.1  15 GQAWAAIDTWQFKDEAQEQAFR 36 
                 688999***************8 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0015
     DUF2092  62 drefyyDGktftlydkaenvYaqapapgtidelldklqekyg 103
                 +++ + D   +++ d +++vY  ++ ++t  +++d++  +yg
  CTQ28505.1  48 QNNSIADSNAMIAADMRQKVYELMQQGKTKGQIVDYMVARYG 89 
                 6777889999*****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1144  (0.0638072); expected 358.6 (0.02)
Passed bias filter:                      889  (0.0495845); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 1294.09
//
Query:       CTQ28506.1  [L=184]
Description: periplasmic thioredoxin of cytochrome c-type biogenesis [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-24   86.3   0.0    1.9e-24   86.0   0.0    1.1  1  Redoxin        Redoxin
    5.3e-15   55.4   0.0    6.7e-15   55.1   0.0    1.1  1  AhpC-TSA       AhpC/TSA family
    3.2e-05   24.3   0.0    4.8e-05   23.8   0.0    1.2  1  Thioredoxin_2  Thioredoxin-like domain
    0.00047   20.4   0.0    0.00077   19.7   0.0    1.3  1  Thioredoxin_8  Thioredoxin-like
     0.0063   16.5   0.0      0.011   15.7   0.0    1.4  1  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
      0.018   15.2   0.0       0.03   14.5   0.0    1.4  1  Thioredoxin_7  Thioredoxin-like


Domain annotation for each model (and alignments):
>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.0   6.4e-28   1.9e-24       3     136 ..      42     164 ..      40     172 .. 0.95

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 6.4e-28
                 TSBB---ECCEETTCEEEEEHHH.HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHH.HHHHHHHTT-TSEE.EE-TTSHHH CS
     Redoxin   3 gdkaPdftlplaatdgnsvslse.fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndaf.vkefwgkeglkfpv.lsDgsaaft 98 
                 g+++P+f+l+ ++t g++++ +    gk++++n++++ +cPtC+aeh +l+ la++    gv vv+++ ++d + +++++ ++g+++++ l+Dg++ + 
  CTQ28506.1  42 GKPLPEFRLEALNTPGQTLDRRTlIDGKPLLLNVWAT-WCPTCRAEHQFLNGLAQQ----GVRVVGMNYKDDRQkAMSWLQRLGNPYRLsLYDGNGMLG 135
                 899**********************************.*********999988777....*************************************** PP

                 HHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSC CS
     Redoxin  99 kalGlrleedaseglrtpryavidedgkvvylevepep 136
                  +lG++         ++p +++id +g +++++ ++ +
  CTQ28506.1 136 LDLGVY---------GAPETFLIDGQGIIRWRHAGDLN 164
                 ****99.........******************99987 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   2.2e-18   6.7e-15       1     123 [.      41     157 ..      41     158 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 2.2e-18
                 TTSB----EEE..STTCEEEECHHH.TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEES.SSCHHHHHHHHH-H.SSEE.EE-TTSHH CS
    AhpC-TSA   1 vgdkapdfelk..nadgetvslsdy.kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsv.dspeshkkfiekeslnfpl.lsDeegkv 94 
                 +g++ p+f l+  n+ g+t +  ++  gkp++l+++++ wcp C++e + l+ l+    ++gv v+g +  d+ ++  ++ ++ + +++l l+D +g +
  CTQ28506.1  41 IGKPLPEFRLEalNTPGQTLDRRTLiDGKPLLLNVWAT-WCPTCRAEHQFLNGLA----QQGVRVVGMNYkDDRQKAMSWLQRLGNPYRLsLYDGNGML 134
                 799********88888******9999************.********98888765....79********999999**************9789****** PP

                 HHHTT-EETTTTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  95 akaygvlkeekglalratfvidkegkiry 123
                   ++gv+        + tf+id +g+ir+
  CTQ28506.1 135 GLDLGVY------GAPETFLIDGQGIIRW 157
                 *******......9*************98 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.6e-08   4.8e-05       4      98 ..      67     161 ..      65     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.6e-08
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgk.eivarlpG 98 
                    +gkp+l+ +++++Cp C++ ++ l  l +  vrv+ + +k++ ++++  +++  ++   +  ++ n  l+  +gv g P ++++dg+  i  r  G
     CTQ28506.1  67 DGKPLLLNVWATWCPTCRAEHQFLNGLAQQGVRVVGMNYKDDRQKAMSWLQRLGNP-YRLSLYDGNGMLGLDLGVYGAPETFLIDGQgIIRWRHAG 161
                    69********************9999966666666888888888888888888888.5777799***********************655555555 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.6e-07   0.00077       1      94 [.      68     154 ..      68     155 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.6e-07
                    .SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT-HHHHTT-S--TT-SEEEEE-TT-B CS
  Thioredoxin_8   1 gkvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsvpfddkkrnklkkkynvkaiPtlvvldknge 94 
                    gk +lL ++a+wcp c+a ++ l+ l ++     +v++v  ++  ++++  + l+    +++++   d+ +  l   ++v + P ++++d +g 
     CTQ28506.1  68 GKPLLLNVWATWCPTCRAEHQFLNGLAQQ-----GVRVVGMNYKDDRQKAMSWLQRL-GNPYRLSLYDG-NGMLGLDLGVYGAPETFLIDGQGI 154
                    6899****************999999875.....58********9999999999999.99999999988.688999999999999999999985 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.7e-06     0.011      18      47 ..      68      97 ..      55     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.7e-06
                 SSEEEEEEE-TTSHHHHCHHHHHHHHHHHC CS
  Thioredoxin 18 kklvlveFyApwCghCkalaPeleklaeel 47
                  k++l++ +A+wC+ C+a   +l+ la++ 
   CTQ28506.1 68 GKPLLLNVWATWCPTCRAEHQFLNGLAQQG 97
                 6899*************9888888888764 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     1e-05      0.03      16      34 ..      67      85 ..      62     112 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1e-05
                   HT--EEEEE--TT-HHHHH CS
  Thioredoxin_7 16 rgkpvlvffgaswcftCqa 34
                   +gkp+l+++ a+wc+tC+a
     CTQ28506.1 67 DGKPLLLNVWATWCPTCRA 85
                   59***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1471.83
//
Query:       CTQ28507.1  [L=650]
Description: heme lyase, CcmF subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-127  425.5   9.1   1.4e-127  425.5   9.1    2.7  3  CcmF_C           Cytochrome c-type biogenesis protein CcmF C-
    8.7e-56  189.1  20.4    8.7e-56  189.1  20.4    2.6  2  Cytochrom_C_asm  Cytochrome C assembly protein
  ------ inclusion threshold ------
       0.49   10.8   3.9        1.7    9.1   3.9    1.9  1  DUF5313          Family of unknown function (DUF5313)
        2.1    6.8  70.9        2.4    6.6  11.8    2.3  2  DUF2339          Predicted membrane protein (DUF2339)


Domain annotation for each model (and alignments):
>> CcmF_C  Cytochrome c-type biogenesis protein CcmF C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.2   5.3       3.6   1.6e+04      41      63 ..       7      29 ..       5     144 .. 0.56
   2 ?   -4.1   2.1       1.6   7.4e+03     170     170 ..     268     268 ..     184     306 .. 0.46
   3 !  425.5   9.1  3.1e-131  1.4e-127       1     322 [.     316     637 ..     316     638 .. 0.99

  Alignments for each domain:
  == domain 1  score: -5.2 bits;  conditional E-value: 3.6
      CcmF_C 41 NllLvvaaavVllGTLyPlvlda 63
                N lL+ aa + ll  +yPl   a
  CTQ28507.1  7 NFLLCLAAGLALLLSVYPLWGAA 29
                55666666666666666654433 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.6
      CcmF_C 170 r 170
                 +
  CTQ28507.1 268 K 268
                 1 PP

  == domain 3  score: 425.5 bits;  conditional E-value: 3.1e-131
      CcmF_C   1 LalLvvviGgsLlLfalrapklksggrfalvSREsaLllnNllLvvaaavVllGTLyPlvldalglgkiSVGaPyFnavfvplmvplllllgvGpllrW 99 
                 L+lL+v+iGgsLlL+al++ +++++ +++l+SRE++Ll nN+lL++a++vVllGTL+Plv+++lglg+iS+G+P+Fn++f+ lm+p++lllg+Gpl+rW
  CTQ28507.1 316 LVLLIVAIGGSLLLYALKGGRVRARVEHTLWSRETFLLGNNILLMAAMLVVLLGTLLPLVHKELGLGSISIGEPFFNTMFTALMAPFALLLGLGPLIRW 414
                 89************************************************************************************************* PP

      CcmF_C 100 kraklaellkrllvalvlalvlalllal.llgelkvlaalglalavwvvlaalaelaerlrakakellarlrklprsawGmvlAHlGvavtvlGvalvs 197
                 +r+++a+ +krl++al+++l l+l+l++ l+++++++a+ gl++a+wv++ al e++er+ ++++ ++++lr+l+rs+wGmvl+H+Gvavtv+G+++++
  CTQ28507.1 415 RRDDVARQIKRLIIALLVTLSLSLALPWlLQDRITAMAVTGLMMALWVLIFALLEVHERA-THRHGFWRGLRTLTRSQWGMVLGHVGVAVTVIGITFSQ 512
                 ****************************66699**************************9.799*********************************** PP

      CcmF_C 198 ayeverdvrlkpgesvevagyefefegveeveGpNYtaeraelevsrdgkevatlepekRlYtvqempmteaaidagllrdlYvalGeeledeawavrl 296
                 +y+verdvr++pg+s+++ +y+f f+gv+++ GpN+t+ ++ ++v+r+g++ atl++ekR+Yt+++m+mteaai+ gl+rdlY+alGeel+d++wavrl
  CTQ28507.1 513 NYSVERDVRMRPGDSIDIDRYHFVFNGVRNIVGPNWTGGEGIIAVTRNGRPEATLYAEKRFYTASRMMMTEAAISGGLTRDLYAALGEELSDGSWAVRL 611
                 *************************************************************************************************** PP

      CcmF_C 297 yvkpfvrwiWlGallmalGGllalld 322
                 y+kpfvrwiW+G++lmalGGl+++ld
  CTQ28507.1 612 YYKPFVRWIWYGGVLMALGGLCCMLD 637
                 ************************98 PP

>> Cytochrom_C_asm  Cytochrome C assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.1  20.4   1.9e-59   8.7e-56       1     208 [.      89     296 ..      89     299 .. 0.98
   2 ?   -2.4   5.3      0.76   3.4e+03      51      90 ..     402     467 ..     325     509 .. 0.69

  Alignments for each domain:
  == domain 1  score: 189.1 bits;  conditional E-value: 1.9e-59
  Cytochrom_C_asm   1 lsnleesllllawilsllgllleylarklnlsllaavaliaalillgfalf..........lllaelqesadlnpalqspilmiHvplallsYa 84 
                      ++ +e+slll++++ls++++ ++ ++r ++l+ +a+v++++ +i++gf+lf           l++ +++++dlnp+lq+ ++++H+p+++++Y+
       CTQ28507.1  89 WGAHEGSLLLWVLLLSVWTFAVAIFSRRMPLDAVARVLAVMGMIAFGFLLFilftsnpfsrGLPQYPIDGRDLNPLLQDIGMIFHPPILYMGYV 182
                      899******************************************************************************************* PP

  Cytochrom_C_asm  85 tliigallsialliierqlkkkkklklsanlkllkqldrlsyriiliGfvlltigiilGsvWa..eeaWGsywsWDpketaslitWlvfaallh 176
                      +++++++++ia l                  +l ++++r+s+ ++++++++lt+gi+lGs Wa  e++WG++w+WDp+e+as+++Wlv +allh
       CTQ28507.1 183 GFSVAFAFAIASL---------------LAGRLDTAWARWSRPWTQAAWMFLTLGIVLGSAWAyyELGWGGWWFWDPVENASFMPWLVGTALLH 261
                      *************...............78899************************************************************* PP

  Cytochrom_C_asm 177 sri..ek.gwrgkkaailailgflllllayfgvrl 208
                      s +  ek g    ++++lai++f l+ll++f+vr+
       CTQ28507.1 262 SLAvtEKrGSFRAWTVLLAIAAFSLCLLGTFLVRS 296
                      **999888**************************9 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.76
  Cytochrom_C_asm  51 f..........................lllaelqesadlnpalqspilmiHvplallsYatliiga 90 
                      f                           ll++l  s  l  +lq++i ++ v+ +++++ +li++ 
       CTQ28507.1 402 FalllglgplirwrrddvarqikrliiALLVTLSLSLALPWLLQDRITAMAVTGLMMALWVLIFAL 467
                      133456666666777777777777766677777777778888888888888888887777777665 PP

>> DUF5313  Family of unknown function (DUF5313)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.9   0.00038       1.7      23      97 ..     413     482 ..     411     493 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00038
     DUF5313  23 dWvleDlagkgaaaRhviraavplvlilavllLlpgslyvrlemtllillvavlyslalnkesrrhrlakhgldp 97 
                 +W ++D+a++  + R +i   v+l+l la+ +Ll   ++  +   l+++l+ ++++l   +e   hr   hg+ +
  CTQ28507.1 413 RWRRDDVARQ--IKRLIIALLVTLSLSLALPWLLQDRITAMAVTGLMMALWVLIFALLEVHERATHR---HGFWR 482
                 6888999886..6899****************************************99888887776...55555 PP

>> DUF2339  Predicted membrane protein (DUF2339)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  51.7    0.0024        11     248     565 ..       8     368 ..       2     376 .. 0.57
   2 ?    6.6  11.8   0.00054       2.4     249     330 ..     395     568 ..     379     647 .. 0.54

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0024
     DUF2339 248 alaalalaalylalaawlarrkrekaralgeallll.......avvfltlAlplaleaa....wltvalAlegaalawlaglrqkrrlarlfgllalrl 335
                  l++la+++++l+  + l+  +r++ r+++ a  l+       + +fl l+       a      tv +++e    a+ +++r   ++    g l l +
  CTQ28507.1   8 FLLCLAAGLALLLSVYPLWGAARQDRRLMALARPLAcglfaciGGAFLLLVH------AfvvnDFTVRYVAENSNSALPVWYRVAATWGAHEGSLLLWV 100
                 5667776666666666665555555555554444444344433333333333......23444788899999999999999999999999999988888 PP

     DUF2339 336 llaaalllalvllrl.......alalsllvllpllllllllkeke...........lgalvw..................lllgyglpaaalalaawl. 397
                 ll++++  a+++ +        a  l+++++ ++++ll++l   +           +                       l +gy++  +a+a+a++  
  CTQ28507.1 101 LLLSVWTFAVAIFSRrmpldavARVLAVMGMIAFGFLLFILFTSNpfsrglpqypiD----GrdlnpllqdigmifhppiLYMGYVGFSVAFAFAIASl 195
                 888888665555444559877766666677777777777776444666655555550....05555555566666666666688888855555555441 PP

     DUF2339 398 .lrrre...dklarvleaaallllllllavelryalaggllfagswaslaeallalpvl..vllalallllarrrasaslaslyragaalllllallll 490
                  + r +   ++++r + +aa+++l+l + +  ++a +++ + ++   + +e +  +p+l  ++l+ +l++  +r+        +ra++ ll+++a+ l 
  CTQ28507.1 196 lAGRLDtawARWSRPWTQAAWMFLTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLvgTALLHSLAVTEKRG-------SFRAWTVLLAIAAFSLC 287
                 133433667567777778999999999999999999999866654444445545555551122233333333333.......34455555555554444 PP

     DUF2339 491 llllvvvlanpll....igea.vgglpllNpldlalllplvlllllarllkraappaegklrr.......aaaalalalaalffvll 565
                 ll  ++v++  l+    ++ +  +gl++l +l +a+   l+l++l   +++ a+  ++ ++r        +     l++aa+++vll
  CTQ28507.1 288 LLGTFLVRSGVLVsvhaFASDpSRGLFILVLLIVAIGGSLLLYALKGGRVR-ARVEHTLWSREtfllgnnI-----LLMAAMLVVLL 368
                 4444444433333211122224777*******9999888888888777755.5555555555577553332.....33333333333 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00054
     DUF2339 249 laalal.aalylalaawlarrkrekaralgeallll.avvfltlAlplaleaawltval.....Alegaalawlaglrqkrrlarlfg........... 329
                 ++al++  al+l+l  +++ r+++ ar++ + +++l + + l+lAlp +l+++ +++a+     Al+++  a+l     ++r + + g           
  CTQ28507.1 395 FTALMApFALLLGLGPLIRWRRDDVARQIKRLIIALlVTLSLSLALPWLLQDRITAMAVtglmmALWVLIFALL---EVHERATHRHGfwrglrtltrs 490
                 44444223555555555555556666666666655568888888888888888777777444444444444443...2222222222255555555555 PP

     DUF2339 330 .............................................................................l 330
                                                                                              +
  CTQ28507.1 491 qwgmvlghvgvavtvigitfsqnysverdvrmrpgdsididryhfvfngvrnivgpnwtggegiiavtrngrpeatlY 568
                 555555555555555555555555555555555555555555555555555555555555555555555555555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 4605.50
//
Query:       CTQ28508.1  [L=152]
Description: periplasmic heme chaperone [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-42  142.1   0.0      1e-41  141.9   0.0    1.0  1  CcmE      CcmE
  ------ inclusion threshold ------
      0.072   13.3   0.2       0.33   11.2   0.0    2.1  2  DUF3951   Protein of unknown function (DUF3951)


Domain annotation for each model (and alignments):
>> CcmE  CcmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.9   0.0   1.2e-45     1e-41       1     128 []       4     137 ..       4     137 .. 0.96

  Alignments for each domain:
  == domain 1  score: 141.9 bits;  conditional E-value: 1.2e-45
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSXXBXTTTTTS-.....-S-.TTSEEEEEEEE-TTT-EE-TTSSEEEEEEE-T.-EEEEEEES---TT CS
        CcmE   1 rrkkrlklivllllvlaavvvlvlsalqenlvyfltpsevlek.....kae.egrrlrvgGlVkegsvkrdpesleveFvvtdlekelkVeYegilPdl 93 
                 rrk+rl++++++l++l+++v l+l+al++n+++f+tp e++ +     + + +g+rlrvgG V++gs++rdp++l+v+F+++d++  + V+Y+gilPdl
  CTQ28508.1   4 RRKTRLYIVLAVLAGLGLTVSLTLYALSSNIDLFYTPGEIIYGktetrALPhTGQRLRVGGYVQPGSLQRDPQTLDVRFKLYDARGVVDVSYKGILPDL 102
                 5899************************************8887888744559******************************999************* PP

                 --TTSEEEEEEEE-TTSEEEECCEEESS-XXXX.H CS
        CcmE  94 FregqgvvveGrleedgvfeAeevlaKhdekYmpk 128
                 Fregqgvv++G l+ +++++A++vlaKhde+Y+p+
  CTQ28508.1 103 FREGQGVVAQGVLDGERHITAQQVLAKHDENYTPP 137
                 *********************************96 PP

>> DUF3951  Protein of unknown function (DUF3951)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.7e-05      0.33      22      48 ..      23      49 ..       8      51 .. 0.72
   2 ?   -1.3   0.0      0.28   2.5e+03      36      47 ..     133     144 ..     128     147 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.7e-05
     DUF3951 22 vayklFvkkesidiyYTPfdsiTgqtk 48
                v+  l+     id +YTP + i g+t 
  CTQ28508.1 23 VSLTLYALSSNIDLFYTPGEIIYGKTE 49
                5666777778899************97 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.28
     DUF3951  36 yYTPfdsiTgqt 47 
                  YTP +  T  t
  CTQ28508.1 133 NYTPPEVKTAMT 144
                 69**98777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1261.73
//
Query:       CTQ28509.1  [L=76]
Description: cytochrome c biogenesis protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-16   59.7   7.7    4.1e-16   58.8   7.7    1.5  1  CcmD      Heme exporter protein D (CcmD)
  ------ inclusion threshold ------
      0.016   15.2   0.3      0.019   14.9   0.3    1.1  1  DUF5472   Family of unknown function (DUF5472)


Domain annotation for each model (and alignments):
>> CcmD  Heme exporter protein D (CcmD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   7.7   4.6e-20   4.1e-16       1      44 []      15      58 ..      15      58 .. 0.99

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 4.6e-20
        CcmD  1 GgYafYVWlsYgitllvlagLilwslrdrrrllrelrrleaReq 44
                GgYa+YVWl++++t++++++L +++l+ rr+l+ e+rr++aRe+
  CTQ28509.1 15 GGYAVYVWLAVAVTVAAFGLLTVHTLWARRALFHEVRRQQARER 58
                9*****************************************96 PP

>> DUF5472  Family of unknown function (DUF5472)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.3   2.1e-06     0.019       5      34 ..      10      39 ..       7      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.1e-06
     DUF5472  5 chlndgdtwlflwlftafvvavlgllllhy 34
                  ln g   +++wl  a  va +gll +h 
  CTQ28509.1 10 AFLNMGGYAVYVWLAVAVTVAAFGLLTVHT 39
                67999*********************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1036  (0.0577835); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 645.38
//
Query:       CTQ28510.1  [L=245]
Description: heme exporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-30  104.6  21.0    6.2e-30  104.6  21.0    1.4  2  Cytochrom_C_asm  Cytochrome C assembly protein


Domain annotation for each model (and alignments):
>> Cytochrom_C_asm  Cytochrome C assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6  21.0   3.5e-34   6.2e-30      36     214 .]      29     184 ..       5     184 .. 0.90
   2 ?   -4.0   0.1      0.56     1e+04     135     139 ..     209     213 ..     199     226 .. 0.52

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 3.5e-34
  Cytochrom_C_asm  36 avaliaalillgfalflllaelqesadlnpalqspilmiHvplallsYatliigallsialliierqlkkkkklklsanlkllkqldrlsyrii 129
                      +++l+++ + +gf ++        +ad++++++++i+++Hvp+a++s+++++ +a+++++ +                 ++++k +d ++ +++
       CTQ28510.1  29 SALLLVIGLGWGFGFA--------PADYQQGESYRIMYLHVPTAMWSMGLYLAMAVAAFVGV-----------------VWQIKMADLAIAALA 97 
                      3344555566777777........9*************************************.................*************** PP

  Cytochrom_C_asm 130 liGfvlltigiilGsvWaeeaWGsywsWDpketaslitWlvfaallhsri..ek.gwrgkkaailailgflllllayfgvrllgeglh 214
                      ++G+v +++++++G+ W++++WG++w+WD+++t++l++++++a+++++++   +  ++g++a il ++g+++l++++++v +++ +lh
       CTQ28510.1  98 PVGAVCTLVALVSGAAWGKPMWGTWWIWDARLTSELVLLFLYAGVIALWHafDDrRLAGRAAGILVLVGVVNLPIIHYSVYWWN-TLH 184
                      ********************************************99999999667****************************9.787 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 0.56
  Cytochrom_C_asm 135 lltig 139
                      +lt++
       CTQ28510.1 209 FLTLS 213
                      11111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1864.87
//
Query:       CTQ28511.1  [L=219]
Description: heme exporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-83  277.7  31.5    6.3e-83  277.5  31.5    1.0  1  CcmB           CcmB protein
    0.00022   20.7  10.4    0.00022   20.7  10.4    1.9  2  ABC2_membrane  ABC-2 type transporter
     0.0093   16.0   1.7     0.0093   16.0   1.7    3.5  4  BTP            Chlorhexidine efflux transporter


Domain annotation for each model (and alignments):
>> CcmB  CcmB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.5  31.5   1.1e-86   6.3e-83       1     214 [.       2     215 ..       2     216 .. 0.99

  Alignments for each domain:
  == domain 1  score: 277.5 bits;  conditional E-value: 1.1e-86
        CcmB   1 llalllrdlrlalRakgelllgllFfllvvtllplavGPdtallsriapgilWvaallaslLsldrlfaadfedGsLellllapvplellvlaKalAhw 99 
                 + all+r+lrla R+++e+l++l+Ffl+v+tl+p++vG  ++ll++iapg++Wvaalla+lL +drlf++d +dGsLe+l+l p+pl ++vl+K++Ahw
  CTQ28511.1   2 MRALLARELRLAWRSGAEILNPLWFFLIVITLFPFGVGAAPQLLAQIAPGVVWVAALLAALLVMDRLFRDDWQDGSLEQLMLLPTPLVAVVLVKVVAHW 100
                 679************************************************************************************************ PP

        CcmB 100 lltglplvllapllalllnleaaalgllaltLllGtpalsllgavgaAltvgLkrgglLlslLvlPliiPvlifaveaveaaaegldveaalalllalt 198
                 +++glpl++++pl+alll++  +  g+laltLllGtp+ls+lgavg+ ltvgLkrgg+LlslLvlPl +P+lifa++a++aaa+gl+v ++la+l+a+ 
  CTQ28511.1 101 MMSGLPLLIVSPLAALLLGMSLHDAGVLALTLLLGTPTLSFLGAVGVGLTVGLKRGGVLLSLLVLPLAVPLLIFATAACQAAAAGLPVSGYLAMLAAFL 199
                 *************************************************************************************************** PP

        CcmB 199 vvtlvlapfAaaaalr 214
                  ++++l pfA+aaalr
  CTQ28511.1 200 TASATLCPFATAAALR 215
                 ***************9 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7  10.4   3.7e-08   0.00022       4     172 ..       3     167 ..       2     177 .. 0.85
   2 ?   -0.9   2.7      0.15   9.2e+02     118     146 ..     179     206 ..     160     217 .. 0.60

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.7e-08
  ABC2_membrane   4 kallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedgl.nr.pgllffsvlflafsaltsvapvferergvlerelvsplyslsayv 97 
                    +all re++++wr+ + + l +l + l+++++f +  g ++   + l ++ pg++  ++l  a ++++   +  + + g+le+++  p+ +l a+v
     CTQ28511.1   3 RALLARELRLAWRSGAEI-LNPLWFFLIVITLFPFGVGAAP---QLLaQIaPGVVWVAALLAA-LLVMDRLFRDDWQDGSLEQLMLLPT-PLVAVV 92 
                    699************888.7666666666666666666443...4442447************.777777699999*************.****** PP

  ABC2_membrane  98 lakvlvelpvsllqalifllivyflvgldlsrfflflllllltalaasslgllisalapsfedasqlaslvllpl 172
                    l kv+++ ++s l  li++ ++ +l+g+ l   + + l+lll + ++s+lg +   l++ ++ +++l sl++lpl
     CTQ28511.1  93 LVKVVAHWMMSGLPLLIVSPLAALLLGMSLHDAGVLALTLLLGTPTLSFLGAVGVGLTVGLKRGGVLLSLLVLPL 167
                    *************************9****844666999999999999999999999999999999999999997 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.15
  ABC2_membrane 118 ivyflvgldlsrfflflllllltalaass 146
                    +     gl++s + l++l+++lta a+++
     CTQ28511.1 179 CQAAAAGLPVS-GYLAMLAAFLTASATLC 206
                    22334588886.88888888888777766 PP

>> BTP  Chlorhexidine efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.5      0.77   4.6e+03      21      29 ..      48      56 ..      43      66 .. 0.51
   2 ?   -0.6   0.2      0.25   1.5e+03      22      35 ..      86      99 ..      81     107 .. 0.52
   3 !   16.0   1.7   1.6e-06    0.0093      18      45 ..     107     134 ..     103     142 .. 0.90
   4 ?   -2.1   1.6      0.71   4.3e+03      24      28 ..     171     175 ..     157     209 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.77
         BTP 21 lvpllawll 29
                ++p+++w+ 
  CTQ28511.1 48 IAPGVVWVA 56
                555555552 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.25
         BTP 22 vpllawllgvslle 35
                +pl+a++l + +++
  CTQ28511.1 86 TPLVAVVLVKVVAH 99
                55555555443333 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 1.6e-06
         BTP  18 llllvpllawllgvslleagvldiglsl 45 
                 ll++ pl+a+llg+sl++agvl++ l+l
  CTQ28511.1 107 LLIVSPLAALLLGMSLHDAGVLALTLLL 134
                 899********************99987 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.71
         BTP  24 llawl 28 
                 ll ++
  CTQ28511.1 171 LLIFA 175
                 33222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1774.32
//
Query:       CTQ28512.1  [L=207]
Description: heme exporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-27   96.1   0.0      3e-27   95.8   0.0    1.1  1  ABC_tran     ABC transporter
    5.4e-12   46.1   0.1    6.9e-06   26.1   0.1    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00026   20.5   0.0      0.047   13.1   0.0    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.049   12.9   0.1       0.74    9.1   0.1    2.1  2  Zeta_toxin   Zeta toxin
      0.057   13.3   0.1       0.73    9.7   0.0    2.2  2  NACHT        NACHT domain
      0.063   13.0   0.0       0.14   11.8   0.0    1.5  1  AAA_30       AAA domain
      0.077   13.5   0.1       0.12   12.8   0.1    1.2  1  AAA_23       AAA domain
      0.096   12.9   0.0          3    8.1   0.0    2.1  2  Roc          Ras of Complex, Roc, domain of DAPkinase
        0.1   12.2   2.1        5.7    6.5   2.1    2.6  1  AAA_25       AAA domain
       0.11   10.0   0.1       0.15    9.6   0.1    1.1  1  DUF3584      Protein of unknown function (DUF3584)
       0.23   11.4   0.0       0.35   10.8   0.0    1.3  1  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.0   1.8e-30     3e-27       4     136 ..      20     154 ..      17     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 1.8e-30
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHSTTG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdeeiekalsklglk 95 
                 ++l+l +ge++++ G+nGaGK++Ll++l+gl +p++G + ++g++l +  +es+++++ +l ++p ++  lt+ en        + ++ e al+ +gl 
  CTQ28512.1  20 LTLSLAAGELLQVAGDNGAGKTSLLRILCGLARPESGVVSWQGQPLAK-VRESFHRQLLWLGHKPGVNAALTADENlrfffpaSRLQQRESALAAVGLA 117
                 799*********************************************.*********************************989999*********** PP

                 GTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  96 elkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + +d ++    s+LS Gq++rval r+ l++++l++lDEp+
  CTQ28512.1 118 GYEDLPL----SQLSAGQQRRVALTRLWLTDAPLWILDEPF 154
                 ******9....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.2e-06    0.0019       5      83 ..      33     106 ..      32     115 .. 0.73
   2 !   26.1   0.1   4.3e-09   6.9e-06     230     300 ..     120     187 ..     117     187 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.2e-06
      AAA_21   5 iGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv 83 
                  G+Ng+GK++LL++l +lar       ++ +++ g++++k++ ++ +       + +++  l+ + + r+++   r q 
  CTQ28512.1  33 AGDNGAGKTSLLRILCGLAR-----PESGVVSWQGQPLAKVRESFHRQLLWLGHKPGVNAALTADENLRFFFPASRLQQ 106
                 6**************99998.....677777777777777777777766666666666666666666666666666665 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 4.3e-09
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpl 300
                  +lp+++lS G++r  al  + l ++   +l ++DEp + L+  ++++l + l++++r g+  iltTH+pl
  CTQ28512.1 120 EDLPLSQLSAGQQRRVALTRLWLTDA---PLWILDEPFTALDATAMETLTRRLEQHARQGGCAILTTHQPL 187
                 689************77777777777...9****************************88888******96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0063        10      28      42 ..      31      45 ..      19      50 .. 0.85
   2 !   13.1   0.0   2.9e-05     0.047     135     197 ..     125     184 ..      81     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0063
                EEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxx RF
       SMC_N 28 aivGpNGSGKsnlld 42
                 + G NG+GK++ll 
  CTQ28512.1 31 QVAGDNGAGKTSLLR 45
                689*********985 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.9e-05
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivisl 197
                 ++LS G++  val  l        apl++lDe   aLD++ ++ + ++l+++  +    i +++
  CTQ28512.1 125 SQLSAGQQRRVALTRL----WLTDAPLWILDEPFTALDATAMETLTRRLEQHARQgGCAILTTH 184
                 5788888887777655....5789**************************99877334454554 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00045      0.74      18      37 ..      29      48 ..      21      63 .. 0.81
   2 ?    1.6   0.0     0.085   1.4e+02      78      99 ..     160     181 ..     151     183 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00045
  Zeta_toxin 18 lillgGqpGAGKselaellk 37
                l++++G  GAGK++l++ l 
  CTQ28512.1 29 LLQVAGDNGAGKTSLLRILC 48
                6789***********99875 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.085
  Zeta_toxin  78 kdaselvekllqeaiengynii 99 
                  ++ +l+++l q+a + g+ i+
  CTQ28512.1 160 TAMETLTRRLEQHARQGGCAIL 181
                 68999*************9987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00045      0.73       3      21 ..      30      48 ..      28      56 .. 0.82
   2 ?    1.5   0.0      0.15   2.4e+02      35      52 ..      94     114 ..      81     185 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00045
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                + + G++G GKT Ll+ l+
  CTQ28512.1 30 LQVAGDNGAGKTSLLRILC 48
                6689***********9776 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.15
                 SEEEEEETTTTTTS-...... CS
       NACHT  35 klvFflslrelsrsgna...r 52 
                  l Ff++ ++l++++ a    
  CTQ28512.1  94 NLRFFFPASRLQQRESAlaaV 114
                 688999999999998875552 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.8e-05      0.14      15     116 ..      25     172 ..      17     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.8e-05
      AAA_30  15 tsgdrvavltGpAGtGKttalkalreaweaa.g.................grviglAptgkaAkvLaeelgi....eastiakllkrlk.......... 81 
                 + g+ +  + G  G+GKt +l+ l  +++ + g                 ++++ l ++  + ++L+++ ++    +as++++  ++l+          
  CTQ28512.1  25 AAGE-LLQVAGDNGAGKTSLLRILCGLARPEsGvvswqgqplakvresfhRQLLWLGHKPGVNAALTADENLrfffPASRLQQRESALAavglagyedl 122
                 4554.67789**************999999967999999999999999887777777666666666555443225588888888888889999999999 PP

      AAA_30  82 ...............grarlepgtllivDE.agmvdtkqlaallkaaekag 116
                                 r  l+++ l+i DE    +d++ +++l++++e+ +
  CTQ28512.1 123 plsqlsagqqrrvalTRLWLTDAPLWILDEpFTALDATAMETLTRRLEQ-H 172
                 9999999999999985566788899****94466699999999999998.3 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   7.6e-05      0.12      25      40 ..      33      48 ..      27      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.6e-05
      AAA_23 25 tGpNGaGKTTildAik 40
                 G+NGaGKT++l+ ++
  CTQ28512.1 33 AGDNGAGKTSLLRILC 48
                6***********9988 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0018         3       4      20 ..      32      48 ..      30      58 .. 0.85
   2 ?    2.6   0.0     0.094   1.5e+02      64     115 ..     129     182 ..     128     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0018
                EESSTTSSHHHHHHCHC CS
         Roc  4 lvGdsgvGKtsllkrfv 20
                + Gd+g+GKtsll+ ++
  CTQ28512.1 32 VAGDNGAGKTSLLRILC 48
                67**********99776 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.094
                 -SGGCTTTT-HHHHCTSCEEEEE..EEGHHHHCHHHHHHHHHHHCSSS-EEEEE CS
         Roc  64 aGqerfrslhplylreaalailv..ydsrssenlkeWlkelkkvagkspvilvg 115
                 aGq+r  +l++l+l++a l il   +++ + + +++  + l+++a++  + ++ 
  CTQ28512.1 129 AGQQRRVALTRLWLTDAPLWILDepFTALDATAMETLTRRLEQHARQGGCAILT 182
                 9******************99963355666677888888888888877665555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.1    0.0035       5.7      30      50 ..      24      44 ..      20     188 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0035
      AAA_25 30 lpagelallaGapgtGKttla 50
                l+agel  +aG+ g+GKt l+
  CTQ28512.1 24 LAAGELLQVAGDNGAGKTSLL 44
                578999999999999999875 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   9.1e-05      0.15      20      37 ..      30      47 ..      21      48 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 9.1e-05
     DUF3584 20 tnieGtNaaGKTtLlrLi 37
                 ++ G N+aGKT+Llr++
  CTQ28512.1 30 LQVAGDNGAGKTSLLRIL 47
                6899************86 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00021      0.35      91     131 ..      18      59 ..       3      86 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
                  HHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  91 eelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  ++l+  l+  ++  ++G  G+GK++L+  l + ++ + g vs
   CTQ28512.1  18 AALTLSLAAgELLQVAGDNGAGKTSLLRILCGLARPESGVVS 59 
                  55666666559999**************99987666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 1749.71
//
Query:       CTQ28513.1  [L=446]
Description: Gluconate 2-dehydrogenase cytochrome c subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-24   85.1   0.0    4.6e-10   40.5   0.0    3.6  3  Cytochrom_C      Cytochrome c
    1.5e-23   82.9   0.3      1e-10   41.8   0.0    3.9  3  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
    6.3e-05   22.6   2.4        3.8    7.3   0.0    3.3  3  Paired_CXXCH_1   Doubled CXXCH motif (Paired_CXXCH_1)
    0.00063   19.7   0.1         16    5.6   0.0    3.3  3  Cytochrome_C7    Cytochrome c7 and related cytochrome c
  ------ inclusion threshold ------
      0.021   13.5   0.1       0.59    8.7   0.0    2.6  3  DHOR             Di-haem oxidoreductase, putative peroxidase
      0.049   13.3   1.5        6.8    6.4   0.0    3.9  5  Cytochrom_C550   Cytochrome c-550 domain
       0.21   12.2   0.9         44    4.8   0.0    4.1  4  PSCyt1           Planctomycete cytochrome C
        2.5    9.0  11.3         10    7.0   0.1    3.8  4  GSu_C4xC__C2xCH  Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C


Domain annotation for each model (and alignments):
>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.4e-08   5.4e-05       2      90 ..      32     131 ..      31     132 .. 0.82
   2 !   16.3   0.0   7.4e-06     0.017       2      91 ..     180     292 ..     179     293 .. 0.61
   3 !   40.5   0.0     2e-13   4.6e-10       2      91 ..     319     405 ..     318     406 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.4e-08
                  --HHHHH.HTTGGGTB-SSSBSSS................--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHH CS
  Cytochrom_C   2 arGkelf.tanCaaCHgvegggakqgg............gptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaa 86 
                  ++G+ l  + +C+aCH+ ++ g++ +g            + +++   e   + +  +  ++  ++   +d+ + ++  a+ ++ + r++e+++++++a
   CTQ28513.1  32 KQGEYLArAGDCVACHTNGKAGKPFAGglpmetpigtiySTNITPDKEHGIGGYTFEEFDDAVRKGVRKDGSTLYP--AMPYPSFARISEADMRAMYA 127
                  57888888889*****999999998889**********99999999999999999999998876666666666666..44444458************ PP

                  HHHT CS
  Cytochrom_C  87 YLks 90 
                  Y ++
   CTQ28513.1 128 YFMH 131
                  *995 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 7.4e-06
                  --HHHHH.H.TTGGGTB-SSSBSSS.........................--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.... CS
  Cytochrom_C   2 arGkelf.t.anCaaCHgvegggakqgg.....................gptlsgaaerasaasigasvanpaavsaprddfekkkltaempark... 73 
                  +rG+ l+    +C aCH+++    ++                       +                        +s+ + ++ +   ++e+   +   
   CTQ28513.1 180 ERGRYLVeGlGHCGACHTPRSLTMQEKAlsesegddylagsnapidgwvA------------------------SSLRGENRDGLGTWSEAELAEflk 253
                  567777743459*********99986445555555555555444444444........................444444444444444433333444 PP

                  .....................TT--HHHHHHHHHHHHTT CS
  Cytochrom_C  74 .....................erlteqeiadlaaYLksl 91 
                                       + l++++i ++a YLksl
   CTQ28513.1 254 tgrndksvvfggmsdvvehslQYLSDDDITAIARYLKSL 292
                  44444555555555556677799**************97 PP

  == domain 3  score: 40.5 bits;  conditional E-value: 2e-13
                  --HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHHTT CS
  Cytochrom_C   2 arGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaemparkerlteqeiadlaaYLksl 91 
                  + G++l+ +nCaaCH+ +g g k +  p l+g+   ++++    +      +  p+++ +   ++  mp +  rl++q++ad+++++++ 
   CTQ28513.1 319 KTGAALYVDNCAACHRTDGAGYKRA-FPSLKGNPVVQTEDATSLIHIVLTGSTTPAVKDAV--SNLTMPSFGWRLDDQQVADVVNFIRTS 405
                  689****77*************988.*******9999999999999888666655555555..5566777777**************996 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.2e-08   2.7e-05       2      66 ..      30     128 ..      29     129 .. 0.78
   2 !   12.2   0.1     8e-05      0.18       4      67 .]     180     289 ..     177     289 .. 0.72
   3 !   41.8   0.0   4.5e-14     1e-10       2      67 .]     317     402 ..     316     402 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.2e-08
  Cytochrome_CBB3   2 aaaaGaalykk.nCasCHgkggagpslagr.dwep.......................dalvdiiknGkg........aMpafgg.qlsdeelw 61 
                       +++G++l ++ +C++CH++g+ag+++ag   +e+                       +++ d++++G++        aMp     ++s+++ +
       CTQ28513.1  30 LIKQGEYLARAgDCVACHTNGKAGKPFAGGlPMETpigtiystnitpdkehgiggytfEEFDDAVRKGVRkdgstlypAMPYPSFaRISEADMR 123
                      579999**9999************888855566544666677777778889999999999999999997333445555899555559******* PP

  Cytochrome_CBB3  62 alvaY 66 
                      a++aY
       CTQ28513.1 124 AMYAY 128
                      ****9 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 8e-05
  Cytochrome_CBB3   4 aaGaalykk..nCasCHgkggag...........................pslagr......dwepdalvdiiknG.......kgaMpafgg.. 53 
                      ++G++l +   +C +CH++  +                             sl+g+      +w++++l +++k G       +g+M +     
       CTQ28513.1 180 ERGRYLVEGlgHCGACHTPRSLTmqekalsesegddylagsnapidgwvaSSLRGEnrdglgTWSEAELAEFLKTGrndksvvFGGMSDVVEhs 273
                      678888887779******5544344455667777888888888888888866663323455788889999999999555554447999766555 PP

  Cytochrome_CBB3  54 ..qlsdeelwalvaYl 67 
                         lsd+++ a++ Yl
       CTQ28513.1 274 lqYLSDDDITAIARYL 289
                      789************7 PP

  == domain 3  score: 41.8 bits;  conditional E-value: 4.5e-14
  Cytochrome_CBB3   2 aaaaGaalykknCasCHgkggag.....pslagr...dwep...dalvdiiknG...........kgaMpafggqlsdeelwalvaYl 67 
                      + ++Gaaly  nCa+CH ++gag     psl+g+      +     l +i+  G           +  Mp+fg +l+d++++++v+++
       CTQ28513.1 317 DSKTGAALYVDNCAACHRTDGAGykrafPSLKGNpvvQ--TedaTSLIHIVLTGsttpavkdavsNLTMPSFGWRLDDQQVADVVNFI 402
                      5689**************999***********885432..1334899999999966666555443348******************98 PP

>> Paired_CXXCH_1  Doubled CXXCH motif (Paired_CXXCH_1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0017       3.8       5      17 ..      39      51 ..      37      61 .. 0.76
   2 !    6.1   0.1     0.004       8.9       7      24 ..     190     208 ..     186     216 .. 0.70
   3 !    7.3   0.0    0.0017       3.8       7      24 ..     327     344 ..     322     355 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0017
  Paired_CXXCH_1  5 aegeClsCHnphg 17
                    ++g+C +CH   +
      CTQ28513.1 39 RAGDCVACHTNGK 51
                    6899*****7654 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.004
  Paired_CXXCH_1   7 geClsCHnphgs.dnpkll 24 
                     g C +CH p +   ++k l
      CTQ28513.1 190 GHCGACHTPRSLtMQEKAL 208
                     57*****998763355555 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0017
  Paired_CXXCH_1   7 geClsCHnphgsdnpkll 24 
                     ++C +CH++ g+ +++ +
      CTQ28513.1 327 DNCAACHRTDGAGYKRAF 344
                     67******9998877655 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0     0.007        16      49      59 ..      38      52 ..      17      73 .. 0.70
   2 ?    4.8   0.0     0.012        28      15      58 ..     191     200 ..     176     218 .. 0.64
   3 !    5.2   0.0    0.0091        20      49      57 ..     327     336 ..     300     359 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.007
  Cytochrome_C7 49 t....CgaCHdgkna 59
                   +    C aCH++ +a
     CTQ28513.1 38 AragdCVACHTNGKA 52
                   123347777766554 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.012
  Cytochrome_C7  15 kCtdCHsklfeskakkkmaemekgkskkaevesltCgaCHdgkn 58 
                    +                                  CgaCH+ + 
     CTQ28513.1 191 H----------------------------------CGACHTPRS 200
                    4..................................555555443 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0091
  Cytochrome_C7  49 t.CgaCHdgk 57 
                    + C+aCH+ +
     CTQ28513.1 327 DnCAACHRTD 336
                    1466666654 PP

>> DHOR  Di-haem oxidoreductase, putative peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.41   9.3e+02     358     376 ..      31      49 ..      20      59 .. 0.67
   2 ?    1.4   0.0     0.044        98     360     389 ..     181     211 ..     174     221 .. 0.74
   3 ?    8.7   0.0   0.00027      0.59      60     144 ..     317     398 ..     304     424 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.41
        DHOR 358 vieGaklFeqvgCaeChtp 376
                 +++G+ l +  +C +Cht 
  CTQ28513.1  31 IKQGEYLARAGDCVACHTN 49 
                 5566666666666666653 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.044
        DHOR 360 eGaklFeqvg.CaeChtpkfttkaedeisgl 389
                 +G+ l e +g C +Chtp+  t  e+++s++
  CTQ28513.1 181 RGRYLVEGLGhCGACHTPRSLTMQEKALSES 211
                 56666666655********999888888765 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00027
        DHOR  60 ldgLGpvfnnasCnsChakdGRsstpvleadeervklksneai.flriskiedtevknksasnsygakvavpgfgtqlfhrgvlgv 144
                   + G++  + +C +Ch  dG +     +  + +  +++++a  ++ i      + + + a ++ + ++++p+fg +l ++ v  v
  CTQ28513.1 317 DSKTGAALYVDNCAACHRTDGAGYKRAFPSLKGNPVVQTEDATsLIHIVL----TGSTTPAVKDAVSNLTMPSFGWRLDDQQVADV 398
                 567899999*************9998888777665555555541445542....22233334444555666666666666555554 PP

>> Cytochrom_C550  Cytochrome c-550 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.13   2.9e+02      27      46 ..      32      52 ..      19      64 .. 0.75
   2 ?   -1.4   0.0       0.8   1.8e+03     101     120 ..     111     130 ..      97     136 .. 0.85
   3 ?   -3.4   0.1       3.2   7.1e+03      36      43 ..     191     198 ..     186     211 .. 0.73
   4 ?    1.0   0.0      0.15   3.3e+02      86     119 ..     257     289 ..     251     297 .. 0.76
   5 ?    6.4   0.0    0.0031       6.8      11      43 ..     303     335 ..     295     354 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.13
                    HHHHHHHHH.HTHHHHGGGSB CS
  Cytochrom_C550 27 kkgkklFea.eCaqCHvgGkt 46
                    k+g+ l +a +C  CH++Gk 
      CTQ28513.1 32 KQGEYLARAgDCVACHTNGKA 52
                    55555554327********86 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.8
                     TGGGTTS-HHHHHHHHHHHH CS
  Cytochrom_C550 101 ypelrnltdedlkaiagyil 120
                     yp++  +++ d++a+ +y +
      CTQ28513.1 111 YPSFARISEADMRAMYAYFM 130
                     899999*********99987 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.2
                     HTHHHHGG CS
  Cytochrom_C550  36 eCaqCHvg 43 
                     +C+ CH+ 
      CTQ28513.1 191 HCGACHTP 198
                     69999974 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.15
                     SBGTTTSSSCCGTTTTGGGTTS-HHHHHHHHHHH CS
  Cytochrom_C550  86 edlaelhpslksadiypelrnltdedlkaiagyi 119
                     +d + ++  ++   ++ +l+ l+d+d++aia y+
      CTQ28513.1 257 NDKSVVFGGMSDVVEH-SLQYLSDDDITAIARYL 289
                     5555566666555556.8999**********996 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.0031
                     ESSTTS-EEEEEHHHHHHHHHHHHHHTHHHHGG CS
  Cytochrom_C550  11 plneegetvtlseeqlkkgkklFeaeCaqCHvg 43 
                     p++++  + +   ++ k+g  l+ ++Ca CH  
      CTQ28513.1 303 PVEDSVVKDLWKGNDSKTGAALYVDNCAACHRT 335
                     555555556666788999*************53 PP

>> PSCyt1  Planctomycete cytochrome C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.019        44       1      19 [.      43      65 ..      43      81 .. 0.85
   2 ?   -0.6   0.0      0.93   2.1e+03       8      26 ..      77      97 ..      75     122 .. 0.72
   3 ?    1.0   0.1       0.3   6.8e+02       1       9 [.     192     200 ..     192     222 .. 0.75
   4 ?    0.8   0.0      0.34   7.7e+02       1      10 [.     329     338 ..     329     360 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.019
      PSCyt1  1 CyeCHgpdda....egglrLdsr 19
                C++CH+  +a     ggl +++ 
  CTQ28513.1 43 CVACHTNGKAgkpfAGGLPMETP 65
                ******99999999999988875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.93
      PSCyt1  8 dda..egglrLdsrdaalkgg 26
                d++   gg+ ++ +d+a ++g
  CTQ28513.1 77 DKEhgIGGYTFEEFDDAVRKG 97
                555568999999999999844 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.3
      PSCyt1   1 CyeCHgpdd 9  
                 C +CH+p +
  CTQ28513.1 192 CGACHTPRS 200
                 999**9976 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.34
      PSCyt1   1 CyeCHgpdda 10 
                 C +CH  d a
  CTQ28513.1 329 CAACHRTDGA 338
                 99***99865 PP

>> GSu_C4xC__C2xCH  Geobacter CxxxxCH...CXXCH motif (GSu_C4xC__C2xCH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.4     0.025        55       5      17 ..      44      56 ..      42      59 .. 0.83
   2 ?    2.7   0.6       0.1   2.3e+02      30      36 .]     190     196 ..     183     196 .. 0.84
   3 ?    7.0   0.1    0.0047        10      22      36 .]     307     333 ..     294     333 .. 0.69
   4 ?   -3.8   0.0         8   1.8e+04      22      27 ..     401     410 ..     391     412 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.025
  GSu_C4xC__C2xCH  5 tYCHsnGtgtspt 17
                     + CH nG+++ p 
       CTQ28513.1 44 VACHTNGKAGKPF 56
                     78*****999875 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.1
  GSu_C4xC__C2xCH  30 aaCgsCH 36 
                      ++Cg+CH
       CTQ28513.1 190 GHCGACH 196
                      57***** PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0047
  GSu_C4xC__C2xCH  22 g.....Wtstat.......gaaCgsCH 36 
                            W++ ++       +++C++CH
       CTQ28513.1 307 SvvkdlWKGNDSktgaalyVDNCAACH 333
                      1456678877777788889899***** PP

  == domain 4  score: -3.8 bits;  conditional E-value: 8
  GSu_C4xC__C2xCH  22 g....Wtsta 27 
                           W++ a
       CTQ28513.1 401 FirtsWGNNA 410
                      1455599877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 3792.89
//
Query:       CTQ28514.1  [L=594]
Description: Gluconate 2-dehydrogenase flavoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-23   82.5   0.0    8.3e-23   81.5   0.0    1.5  1  GMC_oxred_C    GMC oxidoreductase
    1.1e-08   34.9   0.0    4.6e-08   32.8   0.0    2.0  2  GMC_oxred_N    GMC oxidoreductase
     0.0032   16.8   0.1     0.0091   15.3   0.0    1.8  2  FAD_binding_3  FAD binding domain
     0.0059   15.9   0.1       0.62    9.2   0.0    3.0  3  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.022   14.1   0.0      0.047   13.1   0.0    1.5  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      0.029   14.0   0.0       0.06   12.9   0.0    1.5  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
      0.037   14.6   1.8        1.6    9.4   0.7    2.9  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.043   13.4   0.0       0.16   11.6   0.0    1.9  2  ApbA           Ketopantoate reductase PanE/ApbA
       0.11   11.6   0.1       0.17   10.9   0.1    1.3  1  Lycopene_cycl  Lycopene cyclase protein
       0.12   12.3   0.0       0.22   11.4   0.0    1.5  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
       0.16   11.7   0.0       0.25   11.0   0.0    1.3  1  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro
       0.17   12.5   0.0       0.47   11.1   0.0    1.8  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> GMC_oxred_C  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   5.6e-26   8.3e-23       3     142 ..     449     574 ..     447     575 .. 0.92

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 5.6e-26
                  --EEEEEST..T-TCCEEEEE--TT-SHHHHHHHHHHHHHHHHHCTSGGGTTEECCEECCCTTTTS.HCHHCHHCHHCHHHHH-EE-S--B-TT-B-S CS
  GMC_oxred_C   3 srGrvtlss..sdptgaplidpnylsdprdlaalvealkaarkilaaaaldvleeeltpgaaeetsdaavesdealekfvkeavltsaHplGtcrMGa 98 
                   ++++ l+   ++  g+pl++++++++++d++++  ++ +++ i++a+  + ++    p++a+ ++d++ ++++              H+ G++ MG+
   CTQ28514.1 449 RQNYLDLDPnyKNVFGQPLLRMTFDWQENDIKMAQFMFDKMAPIAKAM--KPKYILGSPKNANSHFDTTTYQTT--------------HMNGGAVMGE 530
                  568888998889999*********************************..578888888888888877777777..............********** PP

                  TCGCBSB-TTSBBTT-CSEEE-SGGGSSS--SS-THHHHHHHHH CS
  GMC_oxred_C  99 dpkdsVVDsdlrvhgvdnLrVvDaSvfPsapganptltilalAe 142
                  dpk+s+V+ +l++++v+n++V++aS+fP+ +g npt t++alA+
   CTQ28514.1 531 DPKTSAVNRYLQSWDVHNVFVIGASAFPQGLGYNPTGTVAALAY 574
                  ******************************************96 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.72   1.1e+03       5      82 ..      12     101 ..       9     112 .. 0.54
   2 !   32.8   0.0   3.1e-11   4.6e-08     169     291 ..     234     347 ..     141     351 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.72
  GMC_oxred_N   5 veggGsagsvvAaRLsedpstsvlvleaggreknrl............imvlalalklidkklntayetepekalngr.rlilpaGktlGG 82 
                  ++g G +g+ +A+ L+e +  +v++le g+                       + +++++k+++t   ++ ++a+  r  + +  G ++GG
   CTQ28514.1  12 IVGFGWVGAIMAKELTEAG-LNVVALERGPMRDTWPdgaypqvideltYNIRRKLFQDLSKSTVTIRHNTSQQAVPYRqLAAFLPGTGVGG 101
                  5677888888888888876.56778888875443322555544322221222233344444455544555555544331222335666666 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 3.1e-11
  GMC_oxred_N 169 rdlngkhqcGvcllgvtcrtgarqstarawLrpalerpnleiltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLqrS 266
                    ++ ++ cG+c     c    + s   + L+   +++  e+ t+a++ k+ l + k ra+GV++ d +g   ++   a+ v++ a  + + +l+++S
   CTQ28514.1 234 AQMGPCNFCGFCSGY-ACYMYSKASPNVNILPALRQEKRFELRTNANVLKVNLTDDKSRATGVTYVDGQGR--EMEQPADLVIIGAFQFHNVHLMLLS 328
                  455667999999866.8*******************99***************99*************999..999999******************* PP

  GMC_oxred_N 267 GlGkaehLkevgvdvvvdlp.vGknL 291
                  G+Gk  +       +    + vG+n+
   CTQ28514.1 329 GIGKPYN-------PETGEGvVGRNF 347
                  ***9888.......444455577776 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.1e-06    0.0091       1      32 [.       7      38 ..       7      48 .. 0.93
   2 ?   -2.8   0.0       1.9   2.8e+03     225     281 ..     432     489 ..     421     490 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.1e-06
                   EEEEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   +tdV+IVG G +G++ a++L+eaG +vv +e+
     CTQ28514.1  7 KTDVAIVGFGWVGAIMAKELTEAGLNVVALER 38
                   69****************************98 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.9
                    EEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEE.EEEEEEEEESSS CS
  FAD_binding_3 225 rfyvqvearaekeersekfteeevkarlreivgektldveieevs.awtvaqrvaeky 281
                     ++ +++++a+ + +s +++  ++  ++++ +g++ l+  +++ +   ++aq++ +k+
     CTQ28514.1 432 TYTHHLSMDAHGAHQSYRQNYLDLDPNYKNVFGQPLLRMTFDWQEnDIKMAQFMFDKM 489
                    5667788888888888888888888999999999999988888641577777776665 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00042      0.62       2     174 ..       9      39 ..       3      85 .. 0.71
   2 ?    0.6   0.0      0.18   2.6e+02     196     234 ..     270     315 ..     261     325 .. 0.81
   3 ?    1.6   0.0      0.09   1.3e+02     259     278 ..     536     556 ..     520     573 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00042
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegdeekia 99 
                  dv+++G G+ G  +a++l +ag++v+ +e                                                                     
   CTQ28514.1   9 DVAIVGFGWVGAIMAKELTEAGLNVVALE--------------------------------------------------------------------- 37 
                  56666666666666666666666666664..................................................................... PP

                  ESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 100 ydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlvear 174
                                                                                           ++
   CTQ28514.1  38 -------------------------------------------------------------------------RG 39 
                  .........................................................................33 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.18
                  TTEEEEESCEEEEEEETTE.....EEEEEETTSCE..EEESEEEE- CS
                  xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxx..xxxxxxxxx RF
  Pyr_redox_2 196 eGvevklgtsvkeidgnge.....klevvledgee..idadlvvva 234
                  +  e++++++v +++  ++      +++v+++g+e   +adlv+++
   CTQ28514.1 270 KRFELRTNANVLKVNLTDDksratGVTYVDGQGREmeQPADLVIIG 315
                  4668899999999998888777777779999999977788888876 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.09
                  E--TTSBES.STTEEE-GGGC CS
                  xxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2 259 vvdeflrtn.vpgiyaiGDva 278
                   v+++l++  v+++++iG+ a
   CTQ28514.1 536 AVNRYLQSWdVHNVFVIGASA 556
                  6999**9966********988 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.1e-05     0.047      33      72 ..       4      43 ..       1      60 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.1e-05
                  -GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHH CS
  2-Hacid_dh_C 33 elsgktvGiiGlGrIGqavakrlkafgmkviaydrskkke 72
                   l++  v+i+G+G +G  +ak l++ g++v+a +r + ++
    CTQ28514.1  4 VLKKTDVAIVGFGWVGAIMAKELTEAGLNVVALERGPMRD 43
                  578899**************************99987744 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     4e-05      0.06       2      32 ..       5      35 ..       4      49 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4e-05
                HHTS-EEEES-SHHHHHHHHHHHHTT--EEE CS
        IlvN  2 lkgkkiaviGyGsqGhaqalnlrdsgldvvv 32
                lk+  +a++G+G  G   a++l ++gl+vv 
  CTQ28514.1  5 LKKTDVAIVGFGWVGAIMAKELTEAGLNVVA 35
                88999***********************974 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.7    0.0011       1.6       2      32 ..      10      40 ..       9      89 .. 0.90
   2 ?    2.7   0.0      0.13   1.9e+02      52      77 ..     269     296 ..     261     300 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0011
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversd 32
                v++vG G++g  +A++l+e g +V  +er++
  CTQ28514.1 10 VAIVGFGWVGAIMAKELTEAGLNVVALERGP 40
                89***********************999986 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.13
                 HTTEEEECSEEEEEEE.EETTS.EEEEE CS
   Pyr_redox  52 kngievllntkveeie.gsedg.vesvk 77 
                 ++  e+++n++v +++ ++++   ++v+
  CTQ28514.1 269 EKRFELRTNANVLKVNlTDDKSrATGVT 296
                 55789***********544444666666 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.16       1      31 [.      10      40 ..      10      46 .. 0.93
   2 ?   -2.0   0.0       1.6   2.4e+03      24      74 ..     262     314 ..     246     322 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr 31
                +ai+G+G +G ++a +L++ag +v+ + r++
  CTQ28514.1 10 VAIVGFGWVGAIMAKELTEAGLNVVALERGP 40
                69************************99987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
                 EEEE-SCH.HHHH.HHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE CS
        ApbA  24 vtlilrsr.rlea.lkknGlrltseggeeilrppealsaeekselepidlviv 74 
                 +   lr++ r+e   + n l+++  + + ++   + ++ + ++  +p+dlvi+
  CTQ28514.1 262 ILPALRQEkRFELrTNANVLKVNLTDDKSRATGVTYVDGQGREMEQPADLVII 314
                 56667777677755666666666666333333333333334677789999998 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00012      0.17       1      35 [.       9      41 ..       9      49 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasps 35
                   Dv+++G G  g  +A++l   ++gl+vv +e +p 
     CTQ28514.1  9 DVAIVGFGWVGAIMAKEL--TEAGLNVVALERGPM 41
                   9*****************..999*******99884 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015      0.22       2      30 ..      10      38 ..       9      89 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdi 30
                va++G G +Ga +a+ + +agl+Vv +++
  CTQ28514.1 10 VAIVGFGWVGAIMAKELTEAGLNVVALER 38
                9************************9998 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017      0.25      30      62 ..       5      37 ..       1      94 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
                   STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEE CS
  ELFV_dehydrog 30 legkrvaisGsGnvgsyaallltelgakvvavs 62
                   l+++ vai G+G vg  +a+ lte+g +vva+ 
     CTQ28514.1  5 LKKTDVAIVGFGWVGAIMAKELTEAGLNVVALE 37
                   68999**************************85 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00032      0.47       2      37 ..      10      41 ..       9      54 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00032
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCC CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpe 37
                   ++i+G+G +g+ +a+ l++ag    ++v a +r p 
     CTQ28514.1 10 VAIVGFGWVGAIMAKELTEAG---LNVV-ALERGPM 41
                   89*******************...9999.8899885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4414.03
//
Query:       CTQ28515.1  [L=251]
Description: Gluconate 2-dehydrogenase subunit 3 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-38  131.9   0.1    2.9e-38  131.2   0.0    1.4  2  Gluconate_2-dh3  Gluconate 2-dehydrogenase subunit 3
  ------ inclusion threshold ------
      0.013   14.4   0.0       0.02   13.9   0.0    1.1  1  Peptidase_C69    Peptidase family C69
        0.1   12.0   6.2       0.29   10.5   4.6    2.6  2  UCR_Fe-S_N       Ubiquitinol-cytochrome C reductase Fe-S subu
       0.13   12.3   0.0       0.25   11.4   0.0    1.4  1  DUF2164          Uncharacterized conserved protein (DUF2164)


Domain annotation for each model (and alignments):
>> Gluconate_2-dh3  Gluconate 2-dehydrogenase subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.8     8e+03      21      38 ..      29      46 ..      20      60 .. 0.64
   2 !  131.2   0.0   6.6e-42   2.9e-38       2     136 .]      70     224 ..      69     224 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.8
  Gluconate_2-dh3 21 gpgakeagvaafidrqla 38
                     g ga ++gva     q a
       CTQ28515.1 29 GAGAGAIGVATSATAQAA 46
                     678888888776655555 PP

  == domain 2  score: 131.2 bits;  conditional E-value: 6.6e-42
  Gluconate_2-dh3   2 eqaallaaladrIiPstdt.gpgakeagvaafidrqlad.........................aplppeqeayrkglaaldayaraeygksFv 69 
                      +++a+++a+++r+iP+ d+ gpgakeagv++fidrql++                          pl p ++ y  g+a+ +a+++++y k+F+
       CTQ28515.1  70 REWAFINAAVARLIPA-DElGPGAKEAGVPEFIDRQLNTpyatgsiwymqgpfnpdvpkemgyqLPLVP-KQIYNLGIADAEAWCQDQYHKTFA 161
                      89**************.999*******************************************999999.************************ PP

  Gluconate_2-dh3  70 eldgaqqdalLealekeaeakgtgealeasaeahfFsllreltlegyftspigggna..lgwrligfpG 136
                      el+ +qqd+ L  +e + +a  ++++l+as    fF+ l+++t eg+f++pi+ggn+  +gw+li+fpG
       CTQ28515.1 162 ELSSEQQDEALGLWESG-KA--EFKQLPASL---FFTYLLQNTREGFFSDPIHGGNKgmVGWTLINFPG 224
                      *****************.54..667888888...**********************************9 PP

>> Peptidase_C69  Peptidase family C69
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.4e-06      0.02     237     300 ..     106     168 ..      91     174 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.4e-06
  Peptidase_C69 237 drryntpRvWylqrklnPeieqdpesedlplivkperKisvedvkyvlssHyegteyDpygseg 300
                    ++ y+t   Wy+q  +nP++  ++   +lpl+ k    + ++d +   ++ y++t  + ++++ 
     CTQ28515.1 106 NTPYATGSIWYMQGPFNPDVP-KEMGYQLPLVPKQIYNLGIADAEAWCQDQYHKTFAELSSEQQ 168
                    566888899***********9.8899****************************9887777654 PP

>> UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.6   6.5e-05      0.29       1      29 [.       1      34 [.       1      43 [. 0.82
   2 ?   -2.3   0.0      0.66     3e+03      28      36 ..     213     221 ..     213     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.5e-05
  UCR_Fe-S_N  1 mseaesdeptRRDFLy.....iATgavgaVGaaa 29
                m+++e+ +++RRDFL+     i T+++g+ Ga+a
  CTQ28515.1  1 MMSSEKTNNSRRDFLVksmalIPTVVIGGAGAGA 34
                6788999********7554446799999999998 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.66
  UCR_Fe-S_N  28 aaaawPfid 36 
                 +++ w++i+
  CTQ28515.1 213 GMVGWTLIN 221
                 6788***98 PP

>> DUF2164  Uncharacterized conserved protein (DUF2164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.5e-05      0.25      46      65 ..     139     158 ..     133     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.5e-05
     DUF2164  46 hiYNqalaDaqalleerled 65 
                  iYN ++aDa+a+ +++  +
  CTQ28515.1 139 QIYNLGIADAEAWCQDQYHK 158
                 79************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2049.81
//
Query:       CTQ28516.1  [L=123]
Description: Lactoylglutathione lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-08   34.9   0.0    1.7e-08   34.7   0.0    1.1  1  Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygena


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   9.3e-13   1.7e-08       2     127 ..       2     116 ..       1     117 [. 0.91

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 9.3e-13
                 EEEEEEEESHHHHHHHHHHHH...HTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHT CS
  Glyoxalase   2 idhvallvgdleksldFYtkv...LGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkea 97 
                 +dhv   v+d+++s +F+ ++   LG +lv + +       + +++  ag+g ++l l+++++++a+ +         +af+a++ e+v+++++ + +a
  CTQ28516.1   2 FDHVKFGVSDYAASKAFFLQAlapLGVTLVGEGE-------PSYGAELAGSGDASLCLYQSAEKPAPLH---------IAFRADSREQVDAFWQAALAA 84 
                 59*******************9999********9.......99*************************8.........********************* PP

                 TGEEEEEEECH..HCTEEEEEEEEETTSEEEE CS
  Glyoxalase  98 gvkvvaepgrh..yfgalysfyfrDpdGille 127
                 g+k  + pg +  y  + y +++  pdG+ +e
  CTQ28516.1  85 GGKDNGAPGLRlnYHASYYAAFVIAPDGHNIE 116
                 ****9999865115556666699999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       231  (0.0128842); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 955.33
//
Query:       CTQ28517.1  [L=356]
Description: Fe(3+) ions import ATP-binding protein FbpC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-35  121.7   0.0    4.8e-35  121.1   0.0    1.3  1  ABC_tran     ABC transporter
    2.4e-08   34.2   0.6     0.0041   17.0   0.1    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00028   21.3   0.1    0.00055   20.4   0.1    1.4  1  AAA_16       AAA ATPase domain
    0.00058   19.6   0.2     0.0016   18.2   0.2    1.7  1  AAA_29       P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.015   15.5   0.0        0.3   11.3   0.0    2.6  2  TOBE_2       TOBE domain
      0.016   15.5   0.2       0.11   12.7   0.1    2.0  2  AAA_22       AAA domain
      0.018   15.0   0.2      0.066   13.1   0.0    1.8  2  NACHT        NACHT domain
      0.021   14.4   0.1      0.036   13.7   0.1    1.3  1  cobW         CobW/HypB/UreG, nucleotide-binding domain
      0.025   14.3   0.4      0.044   13.5   0.4    1.3  1  AAA_30       AAA domain
       0.03   14.5   0.1       0.06   13.5   0.1    1.5  1  AAA_33       AAA domain
       0.03   14.7   0.0      0.097   13.1   0.1    1.7  2  AAA          ATPase family associated with various cellular a
      0.031   14.2   0.1      0.054   13.4   0.1    1.3  1  RsgA_GTPase  RsgA GTPase
      0.038   13.4   0.0       0.92    8.9   0.0    2.1  1  SMC_N        RecF/RecN/SMC N terminal domain
       0.05   14.1   0.0      0.076   13.5   0.0    1.2  1  AAA_23       AAA domain
      0.063   13.8   0.0       0.13   12.8   0.0    1.6  1  AAA_18       AAA domain
      0.075   12.6   0.2       0.16   11.5   0.2    1.5  1  AAA_25       AAA domain
       0.12   11.2   0.2       0.17   10.6   0.2    1.1  1  DLIC         Dynein light intermediate chain (DLIC)
       0.14   12.4   0.1       0.26   11.5   0.1    1.5  1  AAA_28       AAA domain
       0.17   11.9   0.1       0.31   11.0   0.1    1.3  1  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
       0.19   10.5   0.7        7.6    5.2   0.2    2.4  2  ABC_ATPase   Predicted ATPase of the ABC class
       0.21   10.7   0.3       0.34   10.1   0.3    1.2  1  NB-ARC       NB-ARC domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.1   0.0   5.6e-38   4.8e-35       1     136 [.      19     167 ..      19     168 .. 0.98

  Alignments for each domain:
  == domain 1  score: 121.1 bits;  conditional E-value: 5.6e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren.............esd 82 
                 lk vs++l +ge+v ++G++G+GK+tLl+++agl+kpt+G+i + ++ + +     e++  ++++g ++q   l+p++tv +n             e +
  CTQ28517.1  19 LKGVSMTLGRGEVVSLLGPSGSGKTTLLRAVAGLEKPTSGRIAIGNRTVYDgtprSEIPAEERNLGLVFQSYALWPHKTVFDNvayplklrkvaagEIK 117
                 799******************************************9999999999999***************************************** PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++++l++lgl +l +++     ++LSgGq+qrva+ ral+ +p+++llDEp 
  CTQ28517.1 118 VRVQRVLDQLGLGHLGNRHP----HQLSGGQQQRVAIGRALVYNPPVILLDEPL 167
                 **************999998....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   4.7e-06    0.0041       4      51 ..      34      74 ..      31      89 .. 0.67
   2 !   15.7   0.1   1.2e-05      0.01     220     298 ..     123     199 ..      87     205 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.7e-06
      AAA_21  4 liGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldl 51
                l Gp gsGK++LL+a  +l       e  t+ +  +g+ +++++ +++
  CTQ28517.1 34 LLGPSGSGKTTLLRAVAGL-------EKPTSGRIAIGNRTVYDGTPRS 74
                89**************999.......4445554445554444444444 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.2e-05
      AAA_21 220 gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                  + +l  g+ +++ +++lS G+++  a+  al + +   +++l+DEp ++L+ kl ++   +l+el    g   +++TH+
  CTQ28517.1 123 VLDQLGLGHLGNRHPHQLSGGQQQRVAIGRALVYNP---PVILLDEPLSNLDAKLREEARVFLRELIIkLGLSALMVTHD 199
                 555666689999999*********999999999988...*****************777766655555566778888887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   6.4e-07   0.00055      22      51 ..      27      55 ..      18      89 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 6.4e-07
      AAA_16 22 grpelvllsGesGvGKsslvrellralekd 51
                gr+e+v l G+sG+GK++l+r+++  lek 
  CTQ28517.1 27 GRGEVVSLLGPSGSGKTTLLRAVA-GLEKP 55
                7889******************99.56665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   1.8e-06    0.0016      15      45 ..      22      52 ..      18      61 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.8e-06
      AAA_29 15 htieidlkgatlltGpsGsGKSTllDAiqal 45
                 ++++ + +++ l GpsGsGK+Tll A++ l
  CTQ28517.1 22 VSMTLGRGEVVSLLGPSGSGKTTLLRAVAGL 52
                567777666999*************998765 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.45   3.8e+02      18      40 ..     229     251 ..     202     278 .. 0.73
   2 ?   11.3   0.0   0.00035       0.3       2      75 ..     284     352 ..     283     353 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.45
      TOBE_2  18 glsGtVedveylGsstryvvela 40 
                 g ++t    e++Gs  r++ ++ 
  CTQ28517.1 229 GSPATLFAAEFMGSNNRLHGKVM 251
                 66788888899999999986665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00035
      TOBE_2   2 aiRPEklrlaaagganglsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpddavv 75 
                 +iR E+lrl++a+++n+l+       ylG+  +y+ +++g  + +  ++ ++   al+  +  +l+++++d+++
  CTQ28517.1 284 VIRVERLRLDGAAQDNSLQLPLLTSMYLGDRWEYLFRTEGDDFPL--RAYGT---ALRDAEHCHLTLPAEDVWI 352
                 79*******6555568***********************987733..33333...5666666666666666655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00013      0.11       7      26 ..      31      50 ..      26      77 .. 0.87
   2 ?    0.4   0.0      0.86   7.3e+02      57      99 ..     120     165 ..      86     196 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
      AAA_22  7 ilvvtGesGtGKTtllrrll 26
                ++ + G+sG+GKTtllr ++
  CTQ28517.1 31 VVSLLGPSGSGKTTLLRAVA 50
                56789************987 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.86
      AAA_22  57 lrellralglelkaerlsseell.ealeqalrarav...ielliiDE 99 
                  +++l +lgl++ + +   ++l   + ++ +  ra    ++++++DE
  CTQ28517.1 120 VQRVLDQLGLGHLG-NRHPHQLSgGQQQRVAIGRALvynPPVILLDE 165
                 57788888888888.55555665444444444444489999999998 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.8e-05     0.066       2      21 ..      31      50 ..      30      55 .. 0.90
   2 ?   -1.0   0.0       1.7   1.5e+03      90     127 ..     163     198 ..     145     213 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.8e-05
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +v l G++GsGKTtLl+ +a
  CTQ28517.1 31 VVSLLGPSGSGKTTLLRAVA 50
                7889************9987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.7
                 STT-SS-TCH.........HHHHHCTTTTT--EEEEEE CS
       NACHT  90 lDelvtdlgqkekqpvrtlLselirkkllpeasllltv 127
                 lDe  + l++k ++++r+ L+eli k  l  + l++t 
  CTQ28517.1 163 LDEPLSNLDAKLREEARVFLRELIIK--LGLSALMVTH 198
                 56667777777788899999999988..6666666664 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   4.2e-05     0.036       2      31 ..      31      62 ..      30      65 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.2e-05
                EEEEEESTTCCHHHHHHHHH..CT--SS-EEE CS
        cobW  2 vtvltGflGsGKTtLlnhll..enraglklav 31
                v+ l G+ GsGKTtLl+++   e+  + ++a+
  CTQ28517.1 31 VVSLLGPSGSGKTTLLRAVAglEKPTSGRIAI 62
                67789*************98877777777775 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   5.2e-05     0.044      17      43 ..      28      54 ..      21      66 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.2e-05
      AAA_30 17 gdrvavltGpAGtGKttalkalreawe 43
                +  v+ l Gp G+GKtt+l+a++ + +
  CTQ28517.1 28 RGEVVSLLGPSGSGKTTLLRAVAGLEK 54
                3459999**************987765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1     7e-05      0.06       1      20 [.      31      50 ..      31      74 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7e-05
      AAA_33  1 lvllvGlpGsGKstlaerll 20
                +v l G++GsGK+tl++ ++
  CTQ28517.1 31 VVSLLGPSGSGKTTLLRAVA 50
                68899***********9986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   0.00011     0.097       2      20 ..      33      51 ..      32      69 .. 0.89
   2 ?   -1.9   0.0       4.7     4e+03      53      66 ..     153     165 ..     132     181 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
                EEESSTTSSHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavak 20
                 l Gp G GKT+l +ava 
  CTQ28517.1 33 SLLGPSGSGKTTLLRAVAG 51
                589**************96 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.7
                 HHHTSTSEEEEEET CS
         AAA  53 akekakpsilfiDE 66 
                 a    +p ++++DE
  CTQ28517.1 153 ALVY-NPPVILLDE 165
                 3333.499999999 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   6.3e-05     0.054      98     123 ..      28      53 ..       3      67 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.3e-05
                  TTSEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpel 123
                  +++++ l+G+SG GK+tL+ a+++ +
   CTQ28517.1  28 RGEVVSLLGPSGSGKTTLLRAVAGLE 53 
                  34999**************9998754 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0011      0.92      26     184 ..      31     183 ..      21     215 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--..BTTCSSTTEEEEEEEEEETT...EESSSSSSCEEEEEEEETTSEEEEEETTEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk..skekasvkkaeveitfdned...kklkiekeevsisrrvkrkgeseykingkevt 119
                 + +++Gp GSGK+ ll A+    G ++ ++ r +  ++ ++    +++  +++ ++ ++f+      +k++ ++  + ++ r++  ge +       v+
  CTQ28517.1  31 VVSLLGPSGSGKTTLLRAV---AGLEKPTSGRIAIGNRTVYDgtPRSEIPAEERNLGLVFQSYAlwpHKTVFDNVAYPLKLRKVAAGEIK-------VR 119
                 6678999999999999998...56666666666666666666554444445555555555433311133334444444444444444422.......22 PP

                 HHHHHHHHHCTT-...STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH CS
                 xxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 120 kkevsellesagi...skelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk 184
                  + v ++l   ++   ++++LSgG+++ va+   +    v   p+ llDe  ++LD+k +++   +l+
  CTQ28517.1 120 VQRVLDQLGLGHLgnrHPHQLSGGQQQRVAIGRAL----VYNPPVILLDEPLSNLDAKLREEARVFLR 183
                 22233332222221113556777777766654322....23346677777777777666666555555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.9e-05     0.076      21      39 ..      31      49 ..      11      52 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.9e-05
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                ++ + Gp G+GKTT+l+A+
  CTQ28517.1 31 VVSLLGPSGSGKTTLLRAV 49
                56689************97 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00015      0.13       3      44 ..      34      73 ..      32     106 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00015
      AAA_18  3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe 44
                l G++G+GKttl ++++ ++     ++ +a  n+++++ +p 
  CTQ28517.1 34 LLGPSGSGKTTLLRAVAGLE--KPTSGRIAIGNRTVYDGTPR 73
                89*************98777..66666666666666666665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00019      0.16      29      51 ..      25      47 ..      15      52 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
      AAA_25 29 llpagelallaGapgtGKttlal 51
                 l +ge++ l G++g+GKttl+ 
  CTQ28517.1 25 TLGRGEVVSLLGPSGSGKTTLLR 47
                5789****************985 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2    0.0002      0.17      22      55 ..      26      59 ..      17      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
        DLIC 22 lPsgksvlvlGedgsGkttliaklqGveeekkGr 55
                l  g  v +lG +gsGkttl+  + G+e++  Gr
  CTQ28517.1 26 LGRGEVVSLLGPSGSGKTTLLRAVAGLEKPTSGR 59
                66788899*********************99997 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00031      0.26       2      21 ..      32      51 ..      31      75 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00031
      AAA_28  2 ivitGgestGKTtlleaLaa 21
                + ++G++++GKTtll+a a 
  CTQ28517.1 32 VSLLGPSGSGKTTLLRAVAG 51
                6689*************984 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00036      0.31      14      40 ..      26      50 ..      16      57 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00036
                HHHCHTEEEEEEESTTSSHHHHHHHHH CS
        TsaE 14 lakalgdvilLeGdLGaGKTtlvrgla 40
                l++  g+v+ L G+ G+GKTtl r++a
  CTQ28517.1 26 LGR--GEVVSLLGPSGSGKTTLLRAVA 50
                344..889****************986 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2    0.0089       7.6     240     265 ..      24      50 ..       7      52 .. 0.86
   2 ?    3.0   0.0     0.042        36     380     413 ..     182     215 ..     138     223 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0089
                 EEE-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAle 265
                 m + +G v+ + G+   GK+TLL+A++
  CTQ28517.1  24 MTLGRGeVVSLLGPSGSGKTTLLRAVA 50 
                 7777889999***************85 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.042
                 HHHHHHHH--EEEEEESS-GCCTTT-SEEEEEET CS
  ABC_ATPase 380 vrelykklgvstilvvggsgdyldvAdtvilmee 413
                 +rel+ klg+s ++v+   ++ ++++d+++l+++
  CTQ28517.1 182 LRELIIKLGLSALMVTHDQNEAMAISDRILLLNN 215
                 57899999*********************99986 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3    0.0004      0.34      21      40 ..      30      49 ..      19      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0004
                EEEEEEESTTSSHHHHHHHH CS
      NB-ARC 21 lvvalvGmgGvGKttlakqi 40
                 vv+l G  G+GKttl++ +
  CTQ28517.1 30 EVVSLLGPSGSGKTTLLRAV 49
                499*************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2605.52
//
Query:       CTQ28518.1  [L=589]
Description: Ferric iron ABC transporter, permease protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-22   77.9  35.1    5.1e-13   49.2  16.2    3.5  4  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.02   15.0   0.6      0.092   12.9   0.6    2.2  1  Gas_vesicle   Gas vesicle protein
      0.033   14.3   4.1      0.078   13.1   4.1    1.5  1  UPF0242       Uncharacterised protein family (UPF0242) N-term


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.4      0.68   4.1e+03      67      73 ..      28      34 ..       9      78 .. 0.58
   2 !   49.2  16.2   8.6e-17   5.1e-13       1     182 [.      80     275 ..      80     285 .. 0.82
   3 ?    1.1   1.0     0.047   2.8e+02     110     169 ..     309     383 ..     304     392 .. 0.63
   4 !   43.1  10.9   6.2e-15   3.7e-11       3     168 ..     381     577 ..     379     589 .] 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.68
  BPD_transp_1 67 yvrlirr 73
                  + +++++
    CTQ28518.1 28 LLFIVVQ 34
                  2222222 PP

  == domain 2  score: 49.2 bits;  conditional E-value: 8.6e-17
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf..............vilsilghlilpviillllsaapyvrlirraalrslp 80 
                   +i+lG ++a   ++ n ++++++ pli v+  + ++vl++  v+++               +  +  ++++++++++ l+ +p ++l +++alrs+ 
    CTQ28518.1  80 AIPLGGILAflmVRTNLPGRRIIEPLILVPIFVSPMVLGFGYVVAAgpvgffsqwaqqliGFVPWNIYSMFSIVVIAGLTHVPHAYLYISSALRSVG 176
                   589999999999999999999999999999999999988887777799999999999**8788788899999************************* PP

  BPD_transp_1  81 kdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis...nggvlalviavlllnlvadi 174
                   +d +eaar+ Ga++ q++  v lP++ p+i+   +l f + l  + l++ lg +p  g+++l ++l++ ++      +     l +av+++++++ i
    CTQ28518.1 177 SDVEEAARTVGATPLQVMTSVSLPMVRPSILYACVLLFFLGLEVFGLMLVLG-DP-EGNMVLATYLYKLTNKLGtpsY----HLMAAVAVVLICITI 267
                   **************************************99999999999999.43.8888888888888887775552....333333333333333 PP

  BPD_transp_1 175 lqrlldpr 182
                      +l++r
    CTQ28518.1 268 PLVMLQRR 275
                   33333333 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.047
  BPD_transp_1 110 iitglilafggllggavlleflgswpGlgtllleailgydyseis................nggvlalviavllln 169
                   +++ l +++g  l g +l  f+ +w G+g  l++ ++   +++i                 ++g + +vi++l + 
    CTQ28518.1 309 VVAWLTVTIGVPLLGVALRAFISNW-GVGVSLWDELSLATFHNIWqqpnllraivnsmaigIIGGALAVICYLFVG 383
                   5666677777778888888888888.47777777777777777777888888888776444333333333333333 PP

  == domain 4  score: 43.1 bits;  conditional E-value: 6.2e-15
  BPD_transp_1   3 llGilaalnrnkkldkllrpliivllslPsfv..laillvlvf............................vilsilghlilpviillllsaapyvr 69 
                   ++Gi +  ++   ++++l+  + v++++P ++  la+l+v++f                            v l +l ++i++v +++++ +++y +
    CTQ28518.1 381 FVGIAMH-RKADNVTRFLDYSVLVPRAVPGLLagLAFLWVFLFvpmwldqslkhgwlsalpvadwlrehliVQLRALRNTIFSVWLAYTVVWMAYGL 476
                   6777787.777789999999************555555555559***************************************************** PP

  BPD_transp_1  70 lirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG...lgtllleailgydyseisnggvlalvi 163
                   +++++ l ++  +l+eaar  Gasr qi r+v++P++   +i + +l f ++  +++   +l+ +pG   +g++l++   +  ++  ++ +++ +++
    CTQ28518.1 477 RLISSTLLQVGPELEEAARSNGASRGQITRHVTVPLSRYGLIGSWLLMFLIFEREYSTGVYLL-SPGtetIGSMLVSLWAAGAIDIVAALSFINILL 572
                   ***************************************************************.455566666666655555555444333333444 PP

  BPD_transp_1 164 avlll 168
                   +v+ l
    CTQ28518.1 573 VVIGL 577
                   44444 PP

>> Gas_vesicle  Gas vesicle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6   1.5e-05     0.092      13      39 .]     306     331 ..     305     331 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
  Gas_vesicle  13 GvVIdgditisvagieLltikLrlviA 39 
                  G+V+ +++t+++ g++Ll++ Lr+ i+
   CTQ28518.1 306 GAVVVAWLTVTI-GVPLLGVALRAFIS 331
                  9**********8.9**********985 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   4.1   1.3e-05     0.078       4      55 ..      17      93 ..      15      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
     UPF0242  4 llisiiflYllPll..llaiysiqllseqksWs.....................llsiGlllaaa..GsLlllllll 55
                ++i ++++Y++ l+  + ++ s +++s +ksWs                     +l++Gl ++a+  G +l++l+++
  CTQ28518.1 17 VCITALVIYVPLLFivVQSFLSAPFFSRSKSWSleafafiftdpdfylalrsgfILAFGLVIIAIplGGILAFLMVR 93
                6888899997666665678999**************************************88876457888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4431.67
//
Query:       CTQ28519.1  [L=362]
Description: putative ABC transporter, periplasmmic iron binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-22   79.1   3.5    4.8e-22   79.1   3.5    1.5  2  SBP_bac_8   Bacterial extracellular solute-binding protein
    3.6e-16   59.6   1.0    5.9e-16   58.9   1.0    1.2  1  SBP_bac_11  Bacterial extracellular solute-binding protein
    1.1e-14   54.5   0.2    1.6e-14   53.9   0.2    1.2  1  SBP_bac_6   Bacterial extracellular solute-binding protein
    2.1e-13   50.9   8.4    2.9e-13   50.4   7.2    1.8  1  SBP_bac_1   Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.75   3.4e+03     176     195 ..      31      50 ..      19      56 .. 0.59
   2 !   79.1   3.5   1.1e-25   4.8e-22       2     269 ..      59     315 ..      59     323 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.75
                 -S..--SSTTTTTSBSEEEE CS
   SBP_bac_8 176 dtgadavsefanGevaftin 195
                 d + ++ +++++G+v+++++
  CTQ28519.1  31 DYQKTIDAAVKEGKVVIYST 50 
                 33445555666666666655 PP

  == domain 2  score: 79.1 bits;  conditional E-value: 1.1e-25
                 HHHHHHHH-.TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GGGSTTHHH-HHHHHTT--TS.----EEEEEEE-EEEE CS
   SBP_bac_8   2 lakefekkt.gvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlaeeglladlsdldnlddltdalaavgydgklygvPyasetpyvliy 99 
                 l+k fe+++ gvkv++  ++s +l + + ++ aag +   dvvw ++ + a   +  + ++   +++ ++l+d++      ++ +++  ++e p v+iy
  CTQ28519.1  59 LIKGFEAQYpGVKVEYNDMNSTELYNRYISEQAAGGGS-GDVVWSSSMDTALKLATEYAEQY-ASPEVKQLPDWAV-----WQQKAYGTTYE-PVVFIY 149
                 5788*******************************875.58888865443333333444444.4588888988777.....33466777888.69**** PP

                 EHHHHHHS.---BHHHHHHH....HHHHHHH-SEGG---GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE.-S..--SSTTTTTSBSEE CS
   SBP_bac_8 100 nkdllekaedpktwdellaa....akklkgkfglpdpasgwlqaallakdgksldddggkdglkealellkklkdngkty.dtgadavsefanGevaft 193
                 nk l++++e+p+++ +l ++    a+k+kgk++++d   + l ++l  +d         +++ +++++ l+++ + g t+ ++  ++++ + +Ge +++
  CTQ28519.1 150 NKRLIPQNEVPDSHTALAKLiasqADKFKGKVTTYDIEKSGLGFMLAVQD---------SQADANYFADLANIAKGGLTVqSSTGTMMERVSSGENLIG 239
                 ******988********9885555669******99988654444444414.........455589*************99445589************* PP

                 EE-TTHHHHHH.-TTTSEEEE--S--EEEEEEEEEEBTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS-S-TT CS
   SBP_bac_8 194 ingswdiaaaq.kagkklgaivpkqgsfaggkglavpknaknedlaAldFlkwltspenqaalaektgyipvnksaa 269
                 +n  +++a a+ k+++ lg+++pk+ +++ +    ++  +++++ aA+ +l +++s+ +q+ la +   ++++ + a
  CTQ28519.1 240 YNILGSYAEARaKNDPSLGIAYPKDYVLVLSRVSFISQESEHPN-AAKLWLDYVLSEKGQQILASQADIPSIRRDIA 315
                 ********999555889***************999*********.6******************9887777777666 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   1.0   1.3e-19   5.9e-16       3     226 ..      46     303 ..      45     304 .. 0.74

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 1.3e-19
                 EEE-SSTHHHHHHHHHHH.HHHH---EEEEESSHHHHHHHH.....HHH..-SEEEESSH.HHHHHHHH...GGGGG............GG-EEEEEEE CS
  SBP_bac_11   3 vaaagslaaalrelaaaF.eahtgvkvevsaggsgklarqi.....adgarpDvwipassawlellaaa...glvqa............esavplassp 80 
                 v ++++ ++a   l++ F ++++gvkve+   +s +l+++      a+g   Dv+++ s++   +la++   +++ +            ++a   ++ p
  CTQ28519.1  46 VIYSTTDTKAAGPLIKGFeAQYPGVKVEYNDMNSTELYNRYiseqaAGGGSGDVVWSSSMDTALKLATEyaeQYASPevkqlpdwavwqQKAYGTTYEP 144
                 44555557888899****5557*****************77454435566*********9998888777555444448888999999999999999*** PP

                 EEEEESTT-......TT---SHHHHHHS...S-..-EEEE--T-TTTTHH.HHHHGGG--.....HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEE CS
  SBP_bac_11  81 lviavpkgn......pkkikgwadLlkp...gl..klavadPttspsGlaalalleaaga.....qellkalekkvvklgessrqlltaveageadagi 163
                 +v++++k        p++++ +a+L++    ++  k+ + d   + sGl  + +++ ++a     ++l++  +++ +    s+++++++v +ge  +g 
  CTQ28519.1 145 VVFIYNKRLipqnevPDSHTALAKLIASqadKFkgKVTTYD--IEKSGLGFMLAVQDSQAdanyfADLANIAKGGLT-VQSSTGTMMERVSSGENLIGY 240
                 **********9999999**********74555544566666..5556665554555333333456666555555544.556789**********77665 PP

                 .EEHHHHH...HSTTSSEEEE--TTT--...EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHH CS
  SBP_bac_11 164 .vyeseakaa.engdkleavylpeglnldpldypaavlkkaakreaAraFlafLrspeaqailrk 226
                  +  s a a+ +n + l + y+++ +++  + +++ + + + +++aA+ +l++++s+++q+il++
  CTQ28519.1 241 nILGSYAEARaKNDPSLGIAYPKDYVLV-LSRVSF-ISQESEHPNAAKLWLDYVLSEKGQQILAS 303
                 3333444333268888888899888887.444444.888899********************986 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.2   3.6e-18   1.6e-14      23     219 ..     115     310 ..      97     344 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 3.6e-18
   SBP_bac_6  23 lfqpldpanlpnvnkdfaeeglkdpdgkyypygvgplvlavnkdrlkgrpvPksWaDLld......Peykgkvalpgnngsdlfealllalykdfgedg 115
                 + +++ ++ +++++      +    + k y+ +++p+v+++nk  +++ +vP s + L +      +++kgkv+  + +   +   ++la+  ++  ++
  CTQ28519.1 115 YAEQYASPEVKQLP-----DWAVW-QQKAYGTTYEPVVFIYNKRLIPQNEVPDSHTALAKliasqaDKFKGKVTTYDIE--KSGLGFMLAVQDSQADAN 205
                 55555555555555.....33333.57899**********************6666665444444499*********99..69999************* PP

   SBP_bac_6 116 vkkllrnlkanlhpaq..mvkaagslesge..pavsvvpyffadilpekkkgknlkvvwPedGalvspifmlvkkg.kkkelakafidfllspevqail 209
                 + + l+n+++++  +q  + +++ +++sge    ++++  ++ + ++++    +l + +P+d  lv   + ++ ++ ++++ ak ++d+ ls+++q+il
  CTQ28519.1 206 YFADLANIAKGGLTVQssTGTMMERVSSGEnlIGYNILGSYAEARAKNDP---SLGIAYPKDYVLVLSRVSFISQEsEHPNAAKLWLDYVLSEKGQQIL 301
                 *****************999**********44444555555555555555...*********999999999999999********************** PP

   SBP_bac_6 210 akaggvfPvv 219
                 a +   +P++
  CTQ28519.1 302 ASQAD-IPSI 310
                 ***97.9997 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   7.2   6.6e-17   2.9e-13       5     315 .]      51     299 ..      48     299 .. 0.70

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 6.6e-17
                 HHHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHT.TSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHH CS
   SBP_bac_1   5 tegaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlaka.glllpldpyvkaylapgvkdaadklsssvlpkil 102
                 t+++a   l+ k fe+++pg+kVe+++  s +l++ ++   aaG g  Dv+++         +   +l   ++y++ y+ p+vk+  ++++ ++ +k +
  CTQ28519.1  51 TDTKAAGPLI-KGFEAQYPGVKVEYNDMNSTELYNRYISEQAAGGGSGDVVWS--------SSMdTALKLATEYAEQYASPEVKQ--LPDWAVWQQKAY 138
                 5556666677.99********************************999*****........223588888899999999999885..555556666666 PP

                 CEEEESEEEEEEEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCT.....HCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSH CS
   SBP_bac_1 103 dskvlyvPlyaargliYNkdlfekagldppwtWdelveaakklkekgkkp.....iggarggsasgtayyfalalakslggkvfdkdgggldnpegvta 196
                 +++      y++ ++iYNk l  + +++   t    ++a +  k kgk +       g++++ a ++                                
  CTQ28519.1 139 GTT------YEPVVFIYNKRLIPQNEVPDSHTALAKLIASQADKFKGKVTtydieKSGLGFMLAVQDS------------------------------- 200
                 632......3599**********888886666666666777777777776223332222222222222............................... PP

                 HHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE.EEEEEEEEBTT CS
   SBP_bac_1 197 atylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi.lgayglaipkg 294
                   ++ + y+ +++++ ++g ++++++g+ + + +++Ge  ++++ l++            +a++  k+++ lg+a      + k+   + +    i+  
  CTQ28519.1 201 --QADANYFADLANIAKGGLTVQSSTGTMMER-VSSGENLIGYNILGS------------YAEARAKNDPSLGIA------YPKDYVlVLSRVSFISQE 278
                 ..233344444558999999999999999888.667777777666666............333333333333332......223333569999****** PP

                 CSTHHHHHHHHHHHTSHHHHH CS
   SBP_bac_1 295 sknpeaAkkFldfllspeaqa 315
                 s +p aAk +ld++ls+++q+
  CTQ28519.1 279 SEHPNAAKLWLDYVLSEKGQQ 299
                 ******************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 3113.22
//
Query:       CTQ28520.1  [L=90]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 700.26
//
Query:       CTQ28521.1  [L=359]
Description: putative hydroxyacid dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-108  362.0   2.8   3.3e-108  361.8   2.8    1.0  1  Ldh_2     Malate/L-lactate dehydrogenase


Domain annotation for each model (and alignments):
>> Ldh_2  Malate/L-lactate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.8   2.8  1.8e-112  3.3e-108       4     332 ..      10     338 ..       7     339 .. 0.96

  Alignments for each domain:
  == domain 1  score: 361.8 bits;  conditional E-value: 1.8e-112
                 HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHTT-GGGTGGGHHHHHHHHHTTSSBSS---EEEEEETTEEEEEETTE-HHHHHHHHHHHHHHHHHHH CS
       Ldh_2   4 eelralveavleaagvseedAeivadvlveadlrGvdsHGvarlpryverlkkgkinpkaepevvketpavavvDgdnglGqvvakkamelaiekakeh 102
                 ++l+++v ++++++g ++ +A++vad+l++a+l G+dsHGv ++p+yv++ + g ++ + +++v+k+++av+++Dg+ g+Gqvva++am+l iekak+h
  CTQ28521.1  10 TDLHKFVVSLFTHLGSTPGEATLVADHLIAANLAGHDSHGVGMIPSYVKSHAGGFLQLNRHATVTKDAGAVVTLDGNAGFGQVVAHEAMQLGIEKAKQH 108
                 689************************************************************************************************ PP

                 SEEEEEEEEEE--SSHHHHHHHHHHTTSEEEEEEEE..SSEB--TTBSS--BE--EEEEEEEETTSSEEEEEEESBSS-HHHHHHHHHCT---STTSEE CS
       Ldh_2 103 GigivavrnsnhfGaagyyaemaaeaGligiaftns..splvaptggkeavlGtNPiafaaPakeeepfvlDmAtSvvargkievaarkgkpiPegwal 199
                 G++++a+rn++h+G++gy+ae++a+aGli+i+f+++  +p+vap+ gk+ ++GtNP+++ +P+++++p++lD AtS++a gk +va  kg+ + +g+++
  CTQ28521.1 109 GMAAIALRNAHHVGRIGYWAEQCAAAGLISIHFVSVigDPMVAPFRGKDSRFGTNPLCVVFPRAGHPPLLLDYATSAIAFGKTRVAWHKGEAVAPGCLI 207
                 ************************************99************************************************************* PP

                 ETTSSEES-HHHHHCC..CEE-BTTTHHHHHHHHHHHHHHTCTTTS-HGGGSSSSSSCTSS-SSEEEEEEEEEGGGTT.HHHHHHHHHHHHHHHHTS-B CS
       Ldh_2 200 DadGnpttDPaaaleg..gallplGghKGyglalmvelLagvLsgaatgkevsgsedeekkpaklghffiaidpeafgdaeefkervdalldelraspp 296
                 Da+G+pttDPa + ++  gall++++hKGy+la+++e+L+g+Lsg++t+ + ++ +++ ++  + +++ ++++p+af da + +++++a+++++++sp+
  CTQ28521.1 208 DAEGRPTTDPAVMQTSplGALLTFAQHKGYALATLCEVLGGALSGGQTT-HQESLQTSVDAIFN-CMTTVILRPDAF-DAPDSQAQTEAFIAWCKQSPH 303
                 *************999********************************9.33444444444444.************.9*****************987 PP

                 STTTSS---TTHHHHHHHHHHHHH-EEEEHHHHHHH CS
       Ldh_2 297 aegadevllPGereaaaraerlkeGipldeavleel 332
                    + +vl PGe eaa+r++rl++Gipld+  ++++
  CTQ28521.1 304 D-SDAPVLAPGEWEAANREARLAQGIPLDAGSWQAI 338
                 7.59*****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2674.41
//
Query:       CTQ28522.1  [L=716]
Description: Formate dehydrogenase H [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-90  302.2   0.0    1.1e-89  301.3   0.0    1.4  2  Molybdopterin    Molybdopterin oxidoreductase
    2.2e-30  105.0   0.0    4.2e-30  104.0   0.0    1.5  1  Molydop_binding  Molydopterin dinucleotide binding domain
    7.8e-13   48.2   0.2    1.5e-12   47.3   0.2    1.5  1  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.3   0.0   1.9e-93   1.1e-89       1     430 [.      61     488 ..      61     490 .. 0.92
   2 ?   -3.1   0.0      0.46   2.8e+03     324     364 ..     633     678 ..     610     691 .. 0.78

  Alignments for each domain:
  == domain 1  score: 301.3 bits;  conditional E-value: 1.9e-93
                    B--S-EEECTTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHH....CHH CS
  Molybdopterin   1 RlkyPmvRkqargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppasaq....qti 92 
                    Rlk+Pm+R q+   G F +vsW+eA  + a++l+++++k+gp +++ ++s++ + +e+ ++++k+++++ +  ++++d++a+++++  +    q+ 
     CTQ28522.1  61 RLKQPMIRYQK--GGAFTPVSWQEAIRYTASKLREIKEKHGPRAIMTTGSSRGTGNETNYVMQKFARAVLN--TNNVDCCARVCHGPSVaglqQA- 151
                    9*******555..5*********************************************************..9************997555333. PP

                    CCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB-HCGGGCSEEEEEHTTTHHHHHHHHHHHHHHCCCCTC CS
  Molybdopterin  93 gsdsrsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpryaellkfadewlaikpgtdaalalamghvilqelkvdk 188
                          n ++sn+++d+ens+  +++G N +  +pi+ ar   +a+ ++ak+iv++pr  e+++ ad +l ++ g+  al++a+g+v+l+e +++k
     CTQ28522.1 152 ----LGNGAMSNSISDIENSKCLLVFGYNCADSHPIV-ARRVIKARDNGAKIIVCDPRRIETARIADRHLQLNNGSNMALVNAFGYVLLEEELYNK 242
                    ....34567999*************************.55555588888*********************************************** PP

                    HHHHHHEECHHHCCCCCCCEECCSHHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHHHHHHHHCTHCSSTTCEEEEESSCTT CS
  Molybdopterin 189 eflrkytygkeetdmpllvtleeetgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyravinLallvgnvgqpgGgwahlnGqli 284
                      +++yt g + +++ ++ + +e ++ + +v ar +re  r ++++a+++ i++G+g+++  +  +++r++++Lall+gn g+p  g++ ++Gq++
     CTQ28522.1 243 TYVERYTEGLDAYREAVKDYAPEAVEGIVGVSAREIREAMR-MFAAAPSATIMWGMGVTQFGQAVDVVRGLASLALLTGNLGRPNVGVGPVRGQNN 337
                    ***********************777777777777777555.5566666*********************************************** PP

                    HHHCHHHHTCCTTCCCCCCCTT......HHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEES CS
  Molybdopterin 285 lagaaekvgalpvllsvkslke......ekikfaaeqpgnlgnfprnlfversnllkssgkkvlyllgnnpevdhadenevekalekldlvvvldg 374
                    ++g a+++g lp l + ++ ++      +  +++  +p  +    + +++e  +++  +++k++y++g++p ++ ad ++v k  e ld+vvv d+
     CTQ28522.1 338 VQG-ACDMGVLPNLFPGYQEVTdpavraKFAAAWGIDPALMDDQVGTRITEVPHKALTGEIKAYYIMGEDPLQTEADLGLVRKGIEALDFVVVQDI 432
                    ***.**********999999999**965555555667778888899999999999999************************************** PP

                    CSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEEEEESSS-STT-BEHHHHHHHHH CS
  Molybdopterin 375 rltstalyaDiiLPaatwyEkedlytndegrfqhlkqavsppgeaksdwkIlkaLa 430
                    ++t+ta++aD++LPa++w E+ +++t +++ fq+++qa++p+g+ k dw+I++ La
     CTQ28522.1 433 FMTKTAEMADVLLPATSWGEHGGVFTCADRGFQRFEQAIPPAGNVKRDWEIISLLA 488
                    ****************************************************9887 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.46
                    -ECGGCHHHHHHTTSSSEEEEESH......HHHHSTTSCCCHCHHH CS
  Molybdopterin 324 rnlfversnllkssgkkvlyllgn.....npevdhadenevekale 364
                    r ++++r++l  + +++v+y+  +     ++e ++ +   ++k++e
     CTQ28522.1 633 RGKVISRADLSDRINPGVVYMTYQwwvgaCNELTQDNLDPISKTPE 678
                    6788999999999999999998767777766666666666666655 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.0     7e-34   4.2e-30       1     111 []     576     683 ..     576     683 .. 0.97

  Alignments for each domain:
  == domain 1  score: 104.0 bits;  conditional E-value: 7e-34
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS..-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC.....S-GHC CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpep..evveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwweagekggnaNa 92 
                      l+L+t+r+++++    +t+++ +l++ ++   +v++np+dA++lGi+d +lV+++srrG+v  ra +++r++pGvv+m+++ww      g++N+
       CTQ28522.1 576 LVLCTVREVGHYSCRSMTGNCAALQSLADepGRVQMNPADAQRLGIADKQLVWISSRRGKVISRADLSDRINPGVVYMTYQWWV-----GACNE 664
                      789**********9999999999999988889****************************************************.....***** PP

                      TS--SCSTTT--CSTT-EE CS
  Molydop_binding  93 ltddatdplsgtpefksva 111
                      lt+d +dp+s+tpe k++a
       CTQ28522.1 665 LTQDNLDPISKTPETKYCA 683
                      ****************996 PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.2   2.5e-16   1.5e-12       1      54 [.       1      53 [.       1      54 [. 0.93

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 2.5e-16
                    SEEEEEE-SSBTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHTCHHCCC CS
  Molybdop_Fe4S4  1 ekvvktaCpyCgvgCglevhvkdgkivkvegdpdhpvnegrlCvKGrtllervy 54
                    +k++ ++CpyCg gC+l+++v ++ki ++e   d+ +n+ +lC+KG+ ++++++
      CTQ28522.1  1 MKKITSVCPYCGAGCKLKLVVDNNKIIRAEAA-DGVTNQNQLCLKGYYGWDFLN 53
                    7999**********************998865.6999**************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4982.14
//
Query:       CTQ28523.1  [L=385]
Description: Hippurate hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-31  108.3   0.1    5.4e-31  107.9   0.1    1.2  1  Peptidase_M20  Peptidase family M20/M25/M40
    1.1e-13   51.0   0.0    2.6e-13   49.8   0.0    1.5  1  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.15   11.8   0.0    1.2  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.9   0.1     9e-35   5.4e-31       2     206 ..      69     379 ..      68     380 .. 0.90

  Alignments for each domain:
  == domain 1  score: 107.9 bits;  conditional E-value: 9e-35
                    EEEES-BSS.TTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH.HHHTTTCESEE CS
                    xxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Peptidase_M20   2 lgsHlDvVp.eeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle.gleerekvdav 94 
                    l++++D++p +e      +  ++++   G+++++G+d++++++laa++ l++ +       gt++++fqp+EE   gGa++++e gl+er+++da+
     CTQ28523.1  69 LRADMDALPiTELG----SvSYRSRRA-GVMHACGHDGHTAMLLAAAAHLAQTRHF----SGTVHFVFQPAEENL-GGARKMVEeGLFERFPMDAI 154
                    89*******54444....339999966.**********************996666....9************65.9*******77779******* PP

                    EEEEEESSSBTCHSTETEEEE........................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxx........................................................................... RF
  Peptidase_M20  95 felhieepgileagklaigvv........................................................................... 115
                    ++lh + pgi+  g++a   +                                                                           
     CTQ28523.1 155 YALHNW-PGIPL-GEVALSDGammasldafeitlrgkschaampesgadpivaaaqlimalqtipsrrlspqdsavvsitqinggeainvlpdtvv 248
                    ******.****9.8855555599************************************************************************* PP

                    .................................EEEEEEEEEESHEEECCHHH.HHHHHHHHHHHHTSC.EEEEEES.SSBHTHHHH.TTTE.EEE CS
                    .................................xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxx.xxxx.xxx RF
  Peptidase_M20 116 .................................kvevelleggapvtlndspl.vkalaeaaeelfgek.velivsg.pggtdarff.agip.tvm 173
                                                     + e++ +  g+pvt n ++l ++ ++e+a +++g + v+    + ++++d++ + ++ p +++
     CTQ28523.1 249 lrgtfrclsnrvrarvreliesyvatqpqvsdvQGEIS-WFPGYPVTKN-HALqAQQVREVAVATLGAQaVRWNQAPsMASEDFACMlEACPgAYF 342
                    *****************************998778888.4688889999.7777**********99988788888889*********777796779 PP

                    EEE.SSG...GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxx.xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 174 ifg.pgs...glaHspnEyvdledlekgikvlarlle 206
                    ++g  g+   +  H+   +++++ +  g+++++ l+e
     CTQ28523.1 343 WIGtDGEtpsKPLHNASYDFNDALIGPGVAMWVGLVE 379
                    9**555457799999999999***********99987 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   4.4e-17   2.6e-13       8     103 ..     181     274 ..     177     278 .. 0.93

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 4.4e-17
                 EEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTS CS
   M20_dimer   8 ggkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeilek 103
                  ++it +gk++H+++p+ ga++i ++a+l+ +l+  +++     +     +++t+i+gG a+nv+pd++ +  ++R l +  +++v+e ie+++++
  CTQ28523.1 181 AFEITLRGKSCHAAMPESGADPIVAAAQLIMALQTIPSRRL--SPQDSAVVSITQINGGEAINVLPDTVVLRGTFRCLSNRVRARVRELIESYVAT 274
                 589*********************************99955..666667799*****************************************986 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.5e-05      0.15      42      96 ..     103     159 ..      55     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.5e-05
                    HHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHHH....HHCCCTTEEEEEE CS
  Peptidase_M28  42 vaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafak....akpelkkiaavln 96 
                    +a+lL  a  la+  ++   +v f+f  aEE  l G++++++    +++++++i a+ n
     CTQ28523.1 103 TAMLLAAAAHLAQ-TRHFSGTVHFVFQPAEE-NLGGARKMVEeglfERFPMDAIYALHN 159
                    6999999999998.4488*************.699******866655669998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2903.67
//
Query:       CTQ28524.1  [L=25]
Description: hypothetical protein CH1034_240021 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (25 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        74  (0.00412739); expected 358.6 (0.02)
Passed bias filter:                       49  (0.002733); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 190.75
//
Query:       CTQ28525.1  [L=399]
Description: putative transporter protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-24   85.2  55.9    5.7e-17   61.7  24.8    2.0  2  MFS_1       Major Facilitator Superfamily
    2.6e-09   36.9  35.4    4.3e-09   36.1  35.4    1.3  1  MFS_4       Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
      0.027   13.3  24.5       0.24   10.2   6.8    2.3  2  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8  30.7   3.5e-13   2.1e-09       2     246 ..      16     242 ..      13     248 .. 0.77
   2 !   61.7  24.8   9.5e-21   5.7e-17       2     168 ..     207     372 ..     206     390 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 3.5e-13
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlga 99 
                 ++aa l+++  + + p+++l la++ +i+p  +gll++l  +g++++s++  +l  r+    +l  +l+l+al+ ++++ +++ ++lll+ r+l+Gl++
  CTQ28525.1  16 IMAASLVGFITGYTVPLISLELAQQ-QIAPLYVGLLAALPPAGMMISSFLSPALCRRVEMGVLLSGSLILLALA-TIAScMTTDMTLLLLPRLLTGLAS 112
                 4667777777777778887744444.599*****************************8888999999999999.88886756666************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 g+++ +g ++i+  +++++r+  +gl++++f    + gpll ++      W+ + +i+ ++   +++l  +l   +  +r+   ++          +++
  CTQ28525.1 113 GVIIVLGESWITGGAAGSQRATLTGLYASAFTGCQLAGPLLISVGP---AWQTSALIAIVAVTAVCLL--MLRHLPTGTRESLGERAS--------WRS 198
                 ****************************************977655...6887776666666666453..444444444444433333........444 PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlgls...gllla 246
                     l +  ++  l  ++++f+f+ +++l+llply  ++ gl+   ++ll+
  CTQ28525.1 199 ----LGAFLPV--LASGVFCFAFFDASILALLPLY-GMDKGLNeglAVLLV 242
                 ....4433344..99999999999999********.*****9973322222 PP

  == domain 2  score: 61.7 bits;  conditional E-value: 9.5e-21
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslw.lllvlrvlqGlg 98 
                 + ++f+ a+  + ++++lp +++ d g+++  + ll+t++  g a ++ plG+l+dr+G rrv l ++++f+l+ l+l+l+  ++   l++  +l G++
  CTQ28525.1 207 ASGVFCFAFFDASILALLP-LYGMDKGLNEGLAVLLVTVVLTGDAMFQTPLGWLADRVGIRRVHLSCAVVFSLSlLALPLM-LGSRiQLMAICLLLGAA 303
                 67899**************.777799999*********************************9999999999994555556.34444599999999999 PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlf 168
                 agal++++++ + + f++++  + ++l++ ++s+G++ gp+++g+l+   g+ ++ + l + ++l f+l+
  CTQ28525.1 304 AGALYTLSLVRAGKTFNGQKLIMINALFGFFWSAGSVAGPVVSGMLIGITGYDGLIVTLVASGVL-FLLI 372
                 9**************************************************99985555555555.4443 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1  35.4   7.2e-13   4.3e-09      20     357 ..      37     370 ..      18     375 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 7.2e-13
       MFS_4  20 laegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrerv 118
                 la++q+ +  +gllaa   +G ++ ++l     ++ +  + l ++l++ +l+++a+ +t+ ++++ll R+l+G+as+v++v+g s++   aa ++r+++
  CTQ28525.1  37 LAQQQIAPLYVGLLAALPPAGMMISSFLSPALCRRVEMGVLLSGSLILLALATIASCMTTDMTLLLLPRLLTGLASGVIIVLGESWITGGAAGSQRATL 135
                 67888889999****************9977777777777799***********************************************999999999 PP

       MFS_4 119 gallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaaeaakaeqkslpllalllaYglaGfGYi..itatFlv 215
                  +l +a    G  ++g l +      ++   +W+  a++++v++ +v ll+  ++l  +  ++  ++a  +sl+++  +la g++ f++    +   l+
  CTQ28525.1 136 TGL-YASAFTGCQLAGPLLIS-----VGP--AWQTSALIAIVAVTAVCLLML-RHLPTGTRESLGERASWRSLGAFLPVLASGVFCFAFFdaSILALLP 225
                 885.88877777766654432.....233..488999999999999999998.5555556666666899999999999999999999995223455677 PP

       MFS_4 216 aiardg..aggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgv.llsllspsplglivssvllGltflaitalvlql.arelapp 310
                 ++  d+   +g ++     +l+G a++ ++l wl  a+r g+rr+     ++ ++++ +l+l++ s + l+  ++llG++  a   l l + ++ + ++
  CTQ28525.1 226 LYGMDKglNEGLAVLLVTVVLTGDAMFQTPLGWL--ADRVGIRRVHLSCAVVFSLSLlALPLMLGSRIQLMAICLLLGAAAGALYTLSLVRaGKTFNGQ 322
                 766665347888888899999**********985..789999998777777777775158********************9998888775516777888 PP

       MFS_4 311 atrrllglmTasfgigQilGpllasllaeatgslal.allvaaaalvl 357
                 + + + +l    +  g ++Gp++ ++l   tg   l ++lva+++l+l
  CTQ28525.1 323 KLIMINALFGFFWSAGSVAGPVVSGMLIGITGYDGLiVTLVASGVLFL 370
                 889*****************************8865156699999987 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   6.8     4e-05      0.24     229     361 ..      14     146 ..       8     171 .. 0.90
   2 ?    8.4  10.6   0.00014      0.84     236     377 ..     212     353 ..     154     364 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4e-05
  MFS_1_like 229 ifllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisf 327
                 +++++a ++g++ g     ++l L + +     +G l al  ++ ++  f++  l +++ + +ll  +l++ +l  +   +++++ l+l+  +L g++ 
  CTQ28525.1  14 AMIMAASLVGFITGYTVPLISLELAQQQIAPLYVGLLAALPPAGMMISSFLSPALCRRVEMGVLLSGSLILLALATIASCMTTDMTLLLLPRLLTGLAS 112
                 55666777777777777779999**************************************************999999999***************** PP

  MFS_1_like 328 gllwaaaveyvskiapksleatgqgllsglyfgl 361
                 g++ + + +++   a  s +at+ gl+++++ g 
  CTQ28525.1 113 GVIIVLGESWITGGAAGSQRATLTGLYASAFTGC 146
                 *****************************99885 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00014
  MFS_1_like 236 ilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaii.enawlvlpievLhgisfgllwaa 333
                    ++ + i + l lY  ++g  + l+  lv++   +  ++     +l +++G++++ + + +++ l +l + ++  +   ++ i +L g++ g+l+  
  CTQ28525.1 212 CFAFFDASILALLPLYGMDKGLNEGLAVLLVTVVLTGDAMFQTPLGWLADRVGIRRVHLSCAVVFSLSLLALPLMlGSRIQLMAICLLLGAAAGALYTL 310
                 344566666677888989999999999999999999999999999****************************99988888889999999999999999 PP

  MFS_1_like 334 aveyvskiapksleatgqgllsglyfglGralGsliGGllwdlk 377
                     + k +  +    + +l+  +++++G+  G +++G+l+++ 
  CTQ28525.1 311 SLVRAGKTFNGQKLIMINALFG-FFWSAGSVAGPVVSGMLIGIT 353
                 9999999999999999999985.66***************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3016.60
//
Query:       CTQ28526.1  [L=144]
Description: Glyoxalase I, nickel isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-14   54.6   0.4    1.7e-14   54.1   0.4    1.2  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
     0.0042   17.8   0.1     0.0059   17.4   0.1    1.2  1  Glyoxalase_6  Glyoxalase-like domain
  ------ inclusion threshold ------
       0.03   14.3   0.0      0.056   13.4   0.0    1.4  1  Glyoxalase_2  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.4   2.9e-18   1.7e-14       2     127 ..      12     124 ..      11     125 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 2.9e-18
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGE CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvk 100
                 idh+ l+v d e+s +FYt vL +  + ++            ++ a++ ++++ + + + g++++        hh+af+a+d + v++++  +  +g++
  CTQ28526.1  12 IDHILLVVEDFEASKNFYTAVLSALEIPVIT-------TANEYLLADELVVASRHSPEAAGKLTGR-------HHLAFQARDRDMVDAFYHAALTHGGR 96 
                 9********************8888877777.......45689**********************9.......9************************* PP

                 EEEEEE.CHHCTEEEEEEEEETTSEEEE CS
  Glyoxalase 101 vvaepg.rhyfgalysfyfrDpdGille 127
                   + pg rhy  + y +++ Dp G+ +e
  CTQ28526.1  97 DNGAPGeRHYHPGYYAAFVLDPQGNNIE 124
                 ***99746777777777*********98 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   9.9e-07    0.0059       4     104 ..      17     123 ..      14     126 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9.9e-07
  Glyoxalase_6   4 ldaadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpe...paknrvHldlavedld...aevarlvalGArvlreprdgthgr 94 
                   l ++d +a   F+ a+l     +       ++      +d+  ++ ++ pe   +   r Hl +++ d+d   a  ++++  G+r  ++p +++ + 
    CTQ28526.1  17 LVVEDFEASKNFYTAVLSALEIPVI---TTANEYL--LADELVVASRHSPEaagKLTGRHHLAFQARDRDmvdAFYHAALTHGGRDNGAPGERHYHP 108
                   5577899999999999944443333...2333333..4678888889999986533349*****996664444999*************99987766 PP

  Glyoxalase_6  95 .....vlaDPeGneF 104
                         + DP+Gn  
    CTQ28526.1 109 gyyaaFVLDPQGNNI 123
                   99**********975 PP

>> Glyoxalase_2  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.3e-06     0.056       3      23 ..      14      34 ..      12      50 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.3e-06
                  ----EES-HHHHHHHHHHTT- CS
  Glyoxalase_2  3 lillvvkdieeskkFYedvle 23
                   illvv+d+e sk+FY  vl+
    CTQ28526.1 14 HILLVVEDFEASKNFYTAVLS 34
                  689**************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1231.51
//
Query:       CTQ28527.1  [L=69]
Description: hypothetical protein CH1034_240024 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       153  (0.00853366); expected 358.6 (0.02)
Passed bias filter:                      121  (0.00674884); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.22s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 642.69
//
Query:       CTQ28528.1  [L=410]
Description: multidrug efflux system protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-32  113.3  37.3    1.2e-32  113.3  37.3    1.6  2  MFS_1     Major Facilitator Superfamily
    5.3e-08   32.2   9.7    5.3e-08   32.2   9.7    2.3  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3  37.3   1.3e-36   1.2e-32       6     344 ..      26     356 ..      21     364 .. 0.80
   2 ?    1.7  12.6     0.011        96      67     168 ..     296     395 ..     295     404 .. 0.77

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 1.3e-36
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfp 104
                 f ++l+ +++ p +  ++ +++ ++++ +   ++ly +g ++++ +lG+lsdr+Grr+vll+g+++fal+++ ++f++s+   l++r++qG   +++ +
  CTQ28528.1  26 FSAYLTTDLIQPGII-HIIREFEADVALAPASVSLYLAGGLALQWLLGPLSDRIGRRPVLLTGAIIFALACFSMIFVTSIDQYLIARFIQGTSICFIST 123
                 678999999999999.999***************************************************777778666559***************** PP

       MFS_1 105 agaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkal 203
                 +g++ i + f ++e  r ++ l++ + l++++gpl+g+ l+  l W ++f i++++slla     ll++  p +   +    +     +  +++ +   
  CTQ28528.1 124 VGYVSIQEAFDEKESIRIMAALTSIVLLAPVIGPLAGAGLMNFLHWKLLFAIIGAMSLLAWA---LLIFNMPETVTSQGRGFR----PGEVFSE-FVRA 214
                 ***********************************************************966...777777777777766677....6788888.9999 PP

       MFS_1 204 lkdpvlw.illialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrls.drlgr...rrrlllallllllaalglallav 296
                 +k+pv++  +l+ ++++   + + ++l+p++l ++ g+s g  +a + +++++ v++++ ++++r++ d +++   +r++ + l +ll++++g + +++
  CTQ28528.1 215 FKQPVVLtGALALSFSNL-PIITWVALSPVILIDDGGMSrG-AYAWTQVPVFGGVIIAS-IIVARFIkDPTSHrfiWRTIPIQLTGLLVLLAGNIAWPH 310
                 999988655555555553.7777*****************6.55555555555554333.344444435444434478888889999999999999999 PP

       MFS_1 297 tssavllllvlvliGfglgfvfpsll..alasdlappeeagtasglfn.ta 344
                 t   ++++ +  l+ +g g+ fp l+  al s+++p    gt+s+ +n +a
  CTQ28528.1 311 T--WWWSVSGTSLYALGTGLLFPVLFrfALFSHSLP---KGTVSATINiVA 356
                 9..677766777777777777777761155566665...688888888444 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.011
       MFS_1  67 lglllfalglllllfasslwlllvlrvlqGlgagalfpag..aaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsll 163
                 +gll++++g  +++ ++++w+ + +  l +lg+g+lfp+    al+++  pk   +  i +++++f +++     ++ +++ ++g r +f  la+++ +
  CTQ28528.1 296 TGLLVLLAG-NIAW-PHTWWWSVSGTSLYALGTGLLFPVLfrFALFSHSLPKGTVSATINIVALSFMAAS---VEVARWVYFQAGGRIAFHCLALIAGI 389
                 577777777.6666.588889999999***********97336899999999777777777777666666...56699999999999999999999999 PP

       MFS_1 164 afv.lf 168
                 +++ l+
  CTQ28528.1 390 VVImLV 395
                 977333 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   9.7   5.9e-12   5.3e-08      50     194 ..      55     194 ..      39     201 .. 0.90
   2 ?   -1.0   2.2     0.068   6.1e+02     141     200 ..     257     317 ..     250     323 .. 0.68

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 5.9e-12
                 HHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHH CS
    Sugar_tr  50 livsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlait 148
                 ++vs++l+G+++ + ++g+l+dr+GR+++ll++a++f  + + +++ +   s+ +++++R++ G ++ ++s++  + i+E   +k   +++    + + 
  CTQ28528.1  55 ASVSLYLAGGLALQWLLGPLSDRIGRRPVLLTGAIIFALACFSMIFVT---SIDQYLIARFIQGTSICFISTVGYVSIQEAFDEKESIRIMAALTSIVL 150
                 689*********************************************...******************************988888888888888888 PP

                 HHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGG.S--- CS
    Sugar_tr 149 fGilvaaifglglnktsnadgwrillglqlvpallllilllf.lPES 194
                 +  +++   g+gl ++     w++l+++  +++ll  +ll+f +PE+
  CTQ28528.1 151 LAPVIGPLAGAGLMNFLH---WKLLFAIIGAMSLLAWALLIFnMPET 194
                 888889999999999999...*******9999998877775538888 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.068
                 HHHHHHHHHHHHHHHHHHHHH.HTSS-.TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHH CS
    Sugar_tr 141 slyqlaitfGilvaaifglgl.nktsn.adgwrillglqlvpallllilllflPESPrylve 200
                  ++q+ +  G ++a+i+ + + ++ ++ +  wr  + +ql   l+ll++ + +P + ++ v+
  CTQ28528.1 257 AWTQVPVFGGVIIASIIVARFiKDPTShRFIWRT-IPIQLTGLLVLLAGNIAWPHTWWWSVS 317
                 57899999********999995443332444542.223333334467777999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.36
# Mc/sec: 3449.71
//
Query:       CTQ28529.1  [L=130]
Description: Glyoxalase I, nickel isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-05   25.1   0.0      5e-05   23.5   0.0    1.7  1  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
  ------ inclusion threshold ------
      0.015   16.1   0.0      0.021   15.6   0.0    1.3  1  Glyoxalase_6  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   5.6e-09     5e-05       4     128 .]       4     123 ..       2     123 .. 0.75

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 5.6e-09
                 EEEEEESHHHHHHHHHHHHHTSE.EEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTTGEE CS
  Glyoxalase   4 hvallvgdleksldFYtkvLGfk.lvkktdnteeteglriaffhaggghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeagvkv 101
                 +++l ++dl ++++FY   + +   vk   n+ + ++ ++   h  g +++++  + p g  ++          va+ a++v  +++ +  + + g++ 
  CTQ28529.1   4 YIMLGTNDLPRAIKFYDPLMALLgHVKAGRNEQGASWGTFNGNHTCGLCVGVPFDQQPAGVGNGT--------MVALNARSVAHIAELHALALQLGGRD 94 
                 79999***********9976543033333434444666666666666667777777777777776........8************************* PP

                 EEEEECH..HCTEEEEEEEEETTSEEEEE CS
  Glyoxalase 102 vaepgrh..yfgalysfyfrDpdGillei 128
                  ++pg++  y ++  s+y+rDpdG++l +
  CTQ28529.1  95 EGGPGHRpqYGDGFHSAYVRDPDGNKLAF 123
                 *****971145556666********9875 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.0   2.3e-06     0.021       2     104 ..       5     121 ..       4     124 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.3e-06
  Glyoxalase_6   2 vvldaadpaalaaFwaaa...lgwevereeaaledpegvgpaaedaatllfqrvpe....paknrvHldl...avedldaevarlvalGArvlrepr 88 
                   ++l ++d  ++++F+  +   lg +++ ++   + +++++ +++ +  l+++   +     + n   + l   +v+++++  a +++lG+r  + p 
    CTQ28529.1   5 IMLGTNDLPRAIKFYDPLmalLGHVKAGRN--EQGASWGTFNGNHTCGLCVGVPFDqqpaGVGNGTMVALnarSVAHIAELHALALQLGGRDEGGPG 99 
                   567788888888888754221455544444..5666666665555555544433335554445556666633556888999************9998 PP

  Glyoxalase_6  89 dgthgr......vlaDPeGneF 104
                   ++ + +       ++DP+Gn  
    CTQ28529.1 100 HRPQYGdgfhsaYVRDPDGNKL 121
                   88877789************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 999.75
//
Query:       CTQ28530.1  [L=204]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-43  148.9   0.3      2e-43  148.4   0.3    1.2  1  DUF1062        Protein of unknown function (DUF1062)
  ------ inclusion threshold ------
      0.037   13.8   3.3        0.1   12.3   3.3    1.8  1  zf-H2C2_5      C2H2-type zinc-finger domain
        0.1   12.5   1.7         10    6.1   0.1    2.5  2  zinc_ribbon_4  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> DUF1062  Protein of unknown function (DUF1062)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4   0.3   3.4e-47     2e-43       1     131 [.      36     166 ..      36     170 .. 0.99

  Alignments for each domain:
  == domain 1  score: 148.4 bits;  conditional E-value: 3.4e-47
     DUF1062   1 vNAnkkklDvWliykCekCdstwnltileRvkvksidkellerllsNdkelareyafdlellrrnkaeldeepeyevekeileeaaeeeeleieiklea 99 
                 vN++kk lD+W iykC++Cd+twn+++++R +v++i++ell+rll+Nd++++++ya dl++l+rn+ae +++p+++++++++ + ++++++++++++++
  CTQ28530.1  36 VNSQKKLLDIWSIYKCTHCDYTWNIALFSRLHVSKINRELLQRLLQNDAAMVHYYAADLATLKRNRAEPSGQPDFRIHEQWSVTLMACQRITVRVRVSQ 134
                 8************************************************************************************************** PP

     DUF1062 100 pielrldkllaeklglSrselkrlieegkiss 131
                 p+++ l ++l+++l+lS++e++ l+++g+i+ 
  CTQ28530.1 135 PFRISLLSILKKQLKLSTAEIRWLVATGHIEG 166
                 *****************************975 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.3   1.7e-05       0.1       1       9 [.      49      57 ..      49      57 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.7e-05
   zf-H2C2_5  1 YKCsqCDYs 9 
                YKC++CDY+
  CTQ28530.1 49 YKCTHCDYT 57
                9*******7 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0018        10       4      17 ..      18      31 ..      18      42 .. 0.84
   2 ?    5.2   0.2    0.0033        19      27      36 .]      50      59 ..      47      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0018
  zinc_ribbon_4  4 tCpsCkakyeidde 17
                   +Cp+C+ k+ ++++
     CTQ28530.1 18 RCPACNVKRDFAPS 31
                   7*****99998875 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0033
  zinc_ribbon_4 27 rCskCghvFr 36
                   +C++C  +++
     CTQ28530.1 50 KCTHCDYTWN 59
                   8*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1554.20
//
Query:       CTQ28531.1  [L=240]
Description: glutamine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-35  121.3   0.0    5.1e-35  121.0   0.0    1.1  1  ABC_tran      ABC transporter
    3.7e-12   46.7   0.0    2.4e-06   27.6   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    8.4e-09   35.2   0.1    4.5e-05   23.0   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
    1.8e-05   24.4   0.0    3.2e-05   23.6   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
    0.00019   21.3   0.0      0.007   16.1   0.0    2.0  2  AAA_15        AAA ATPase domain
    0.00073   20.1   0.0     0.0011   19.5   0.0    1.2  1  AAA_23        AAA domain
      0.001   18.8   0.0     0.0014   18.4   0.0    1.4  1  AAA_30        AAA domain
     0.0015   18.9   0.0      0.004   17.5   0.0    1.7  1  AAA_16        AAA ATPase domain
     0.0018   17.1   0.1        1.4    7.6   0.1    3.0  2  ABC_ATPase    Predicted ATPase of the ABC class
     0.0025   18.1   0.0     0.0072   16.6   0.0    1.9  1  AAA_22        AAA domain
     0.0031   16.2   0.0      0.035   12.8   0.0    1.9  2  AAA_13        AAA domain
     0.0075   16.0   0.0      0.014   15.1   0.0    1.5  1  AAA_24        AAA domain
      0.008   16.3   0.1      0.013   15.6   0.1    1.7  1  AAA_33        AAA domain
     0.0083   16.1   0.0      0.013   15.5   0.0    1.3  1  Rad17         Rad17 P-loop domain
     0.0099   15.8   0.0      0.016   15.1   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.035   13.8   0.0    1.4  1  IstB_IS21     IstB-like ATP binding protein
       0.02   14.4   0.0      0.039   13.4   0.0    1.4  1  PhoH          PhoH-like protein
      0.021   14.7   0.1      0.043   13.7   0.1    1.5  1  NTPase_1      NTPase
      0.027   13.8   0.0      0.054   12.8   0.0    1.4  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.039   13.9   0.0      0.086   12.8   0.0    1.7  1  NACHT         NACHT domain
      0.048   13.6   0.0       0.14   12.1   0.0    1.8  2  ATPase_2      ATPase domain predominantly from Archaea
      0.071   12.7   0.0       0.13   11.8   0.0    1.4  1  cobW          CobW/HypB/UreG, nucleotide-binding domain
       0.08   13.2   0.2        1.1    9.5   0.2    2.3  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
      0.084   13.1   0.0       0.24   11.6   0.0    1.8  2  AAA_28        AAA domain
      0.085   13.4   0.2       0.19   12.3   0.2    1.6  1  AAA_18        AAA domain
      0.086   12.6   0.2       0.19   11.5   0.1    1.7  2  ATP_bind_1    Conserved hypothetical ATP binding protein
       0.11   13.0   0.0         21    5.5   0.0    2.4  2  AAA           ATPase family associated with various cellular 
       0.11   12.8   0.1       0.15   12.4   0.1    1.4  1  AAA_19        AAA domain
       0.14   12.1   0.0       0.38   10.8   0.0    1.8  2  AAA_5         AAA domain (dynein-related subfamily)
       0.15   11.8   0.0       0.22   11.2   0.0    1.3  1  PRK           Phosphoribulokinase / Uridine kinase family
       0.16   11.5   0.0        5.1    6.6   0.0    2.2  2  CobU          Cobinamide kinase / cobinamide phosphate guanyl
       0.25   10.4   0.0        0.3   10.2   0.0    1.2  1  G-alpha       G-protein alpha subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.0   0.0   9.2e-38   5.1e-35       1     137 []      17     165 ..      17     165 .. 0.92

  Alignments for each domain:
  == domain 1  score: 121.0 bits;  conditional E-value: 9.2e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH............HHHTC. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxx. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren............esdee. 84 
                 l+ +s ++k+ e+v i+G++G+GKSt+l+++  l++  eGe+ ++g   ++  ++l+++r+++g+++q  +lfp++tv en                + 
  CTQ28531.1  17 LRGISCDIKPQEVVCIIGPSGSGKSTFLRCMNALETVSEGEVVVNGFAAHDrtTDLNKMRESVGMVFQRFNLFPHMTVLENlimapmnlrnmpR---Qq 112
                 6789*****************************************998888899*********************************9996551...34 PP

                 ....HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 ....iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                     +e++l+k+gl++++d       ssLSgGq+qrva+aral+ kp+++l+DEpt+
  CTQ28531.1 113 vvdlAEALLAKVGLSDKRDAWP----SSLSGGQQQRVAIARALAMKPSIMLFDEPTS 165
                 5567999*********666665....*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.8e-06    0.0033       2      22 ..      30      50 ..      29      87 .. 0.81
   2 !   27.6   0.0   4.3e-09   2.4e-06     235     297 ..     135     194 ..     112     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.8e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                 ++iGp gsGKS++L+++  l
  CTQ28531.1 30 VCIIGPSGSGKSTFLRCMNAL 50
                68***************9887 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 4.3e-09
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 ++lS G+++  a++ al+  +   s+ l+DEp + L+P+l+  +le++k+l+++g   +++TH
  CTQ28531.1 135 SSLSGGQQQRVAIARALAMKP---SIMLFDEPTSALDPELVGDVLEVMKNLASEGMTMVIVTH 194
                 567888888867777777655...****************************99********* PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00058      0.33      24      44 ..      27      47 ..      18      55 .. 0.83
   2 !   23.0   0.0     8e-08   4.5e-05     135     209 ..     129     207 ..      54     215 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00058
                SSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAi 44
                +++ +i+Gp GSGKs +l  +
  CTQ28531.1 27 QEVVCIIGPSGSGKSTFLRCM 47
                45889**********998665 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 8e-08
                 T......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-.SCEE CS
                 x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxx RF
       SMC_N 135 e......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemleka.dklv 209
                 +      +LSgG+++ va+a  +A++     +++l+De  +aLD + v  v e++k+  ++ + +++++++ ++ +++ d+++
  CTQ28531.1 129 KrdawpsSLSGGQQQRVAIARALAMK----PSIMLFDEPTSALDPELVGDVLEVMKNLASEgMTMVIVTHEMGFAREVaDRVI 207
                 36666669************999975....3699**********************877665899999999888766535554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   5.6e-08   3.2e-05      14      48 ..      19      53 ..      13      67 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 5.6e-08
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTllDAiqalLvp 48
                g + +i++++++ ++GpsGsGKST+l  ++al + 
  CTQ28531.1 19 GISCDIKPQEVVCIIGPSGSGKSTFLRCMNALETV 53
                5567899999***************9888887554 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-05     0.007      17      50 ..      22      54 ..      17      96 .. 0.73
   2 ?    3.7   0.0     0.073        41     323     364 ..     154     194 ..      69     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-05
      AAA_15 17 veidlseeltvliGkNnsGKSsilealdlFlnnk 50
                ++i+ +e + ++iG+ +sGKS++l+ ++ + + +
  CTQ28531.1 22 CDIKPQE-VVCIIGPSGSGKSTFLRCMNALETVS 54
                3444455.******************99988777 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.073
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 k+ i l++EP   L p++   + + +k+la+++    +i TH
  CTQ28531.1 154 KPSIMLFDEPTSALDPELVGDVLEVMKNLASEGM-TMVIVTH 194
                 5689*****************************8.5666677 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.9e-06    0.0011      12      40 ..      19      48 ..       2      54 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.9e-06
      AAA_23 12 dqeidFsk.gltlItGpNGaGKTTildAik 40
                + ++d ++  +++I+Gp G+GK+T+l+++ 
  CTQ28531.1 19 GISCDIKPqEVVCIIGPSGSGKSTFLRCMN 48
                555666444799***************986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.5e-06    0.0014      17      71 ..      26      84 ..      23     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.5e-06
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggrvi..glAptgkaAkv..Laeelgieas 71
                ++ v+++ Gp G+GK+t l+ ++++ + ++g+v+  g+A   +  +   ++e++g+  +
  CTQ28531.1 26 PQEVVCIIGPSGSGKSTFLRCMNALETVSEGEVVvnGFAAHDRTTDLnkMRESVGMVFQ 84
                56799*****************9999888545443588888888764448888887544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.2e-06     0.004      25      52 ..      28      77 ..      19     211 .. 0.53

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.2e-06
      AAA_16 25 elvllsGesGvGKsslvrellralekd.......................g 52
                e+v ++G+sG+GKs+ +r+   ale+                        +
  CTQ28531.1 28 EVVCIIGPSGSGKSTFLRCMN-ALETVsegevvvngfaahdrttdlnkmrE 77
                7899*************9988.45544454444433333333333333330 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.02        11     243     265 ..      26      48 ..      15      52 .. 0.87
   2 !    7.6   0.1    0.0025       1.4     324     353 ..     138     167 ..     127     219 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.02
                 -SSEEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 243 pkGvtlIvGggfhGKsTLLeAle 265
                 p+ v+ I+G+   GKsT L+ ++
  CTQ28531.1  26 PQEVVCIIGPSGSGKSTFLRCMN 48 
                 688***************98764 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0025
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAt 353
                 SG   q ++i++al ++ +++L+DE tsA 
  CTQ28531.1 138 SGGQQQRVAIARALAMKPSIMLFDEPTSAL 167
                 9999999*********************95 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.3e-05    0.0072       4      29 ..      26      51 ..      23     198 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.3e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleql 29
                 + +++++G+sG+GK+t lr +    
  CTQ28531.1 26 PQEVVCIIGPSGSGKSTFLRCMNALE 51
                577899*************9887764 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.17        97      21      43 ..      32      54 ..      24      86 .. 0.79
   2 !   12.8   0.0   6.2e-05     0.035     526     580 ..     154     205 ..     145     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.17
      AAA_13 21 iYGwNGaGKTtLSrllrslelge 43
                i G  G+GK+t+ r ++ le+ +
  CTQ28531.1 32 IIGPSGSGKSTFLRCMNALETVS 54
                77999*********999998654 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 6.2e-05
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580
                 k  i  +D P S LD + +  v   +k+ +   ++   + i TH + f +ev ++
  CTQ28531.1 154 KPSIMLFDEPTSALDPELVGDVLEVMKNLA---SEGMTMVIVTHEMGFAREVADR 205
                 899**************************9...777778899*********9876 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.5e-05     0.014       4      22 ..      29      47 ..      27      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.5e-05
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 ++i+Gpsg+GK+t+++ +
  CTQ28531.1 29 VVCIIGPSGSGKSTFLRCM 47
                58**************998 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   2.4e-05     0.013       1      19 [.      29      47 ..      29     166 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.4e-05
      AAA_33  1 lvllvGlpGsGKstlaerl 19
                +v ++G++GsGKst+++ +
  CTQ28531.1 29 VVCIIGPSGSGKSTFLRCM 47
                7999***********9854 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.2e-05     0.013      40     115 ..      22     100 ..       8     119 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.2e-05
       Rad17  40 LesrkkriLLisGPsGCgkstvvkvLsk.elgiklrewlnpvslkepdn...qksdfkgltekesrflsqiesfkeleLk 115
                  + ++++++ i GPsG gkst ++ +   e + + +  +n+   ++      +  +  g++ +  ++ + + + ++l  +
  CTQ28531.1  22 CDIKPQEVVCIIGPSGSGKSTFLRCMNAlETVSEGEVVVNGFAAHDRTTdlnKMRESVGMVFQRFNLFPHMTVLENLI-M 100
                 556778899***************997615555556678998865443311355666666544444588888887774.3 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.9e-05     0.016      97     130 ..      24      58 ..       6      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.9e-05
                  CTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  +k  ++++++G+SG GKSt++  ++  ++++ gev
   CTQ28531.1  24 IKPqEVVCIIGPSGSGKSTFLRCMNALETVSEGEV 58 
                  5554899*************999887666666555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.3e-05     0.035      44      90 ..      24      72 ..      15     124 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.3e-05
   IstB_IS21 44 iekkenivllGpsGvGKs.hlaialgveavraglsvl.fvrvedLveel 90
                i+ +e ++++GpsG GKs +l +  + e+v +g  v+  + ++d  + l
  CTQ28531.1 24 IKPQEVVCIIGPSGSGKStFLRCMNALETVSEGEVVVnGFAAHDRTTDL 72
                677899***********63778888999999887665234444444444 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.9e-05     0.039      16      49 ..      24      58 ..      14      60 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.9e-05
                HHH-SEEEEE--TTSST.THHHHHHHHHHHHTTS- CS
        PhoH 16 lkkndivfaiGpaGtGK.tylavalavealkkkkv 49
                +k +++v++iGp+G+GK t+l ++ a+e +++++v
  CTQ28531.1 24 IKPQEVVCIIGPSGSGKsTFLRCMNALETVSEGEV 58
                67789************78999*******999876 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   7.7e-05     0.043       2      39 ..      30      69 ..      29      82 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.7e-05
                EEEE--TTSSHHHHHH..HHHHHH...GGGEEEEEEEEE- CS
    NTPase_1  2 vfiTGppGvGKtTlvk..kvlellkssgvkvgGfyteevr 39
                v+i Gp+G+GK+T+++  ++le++++ +v v+Gf +++ +
  CTQ28531.1 30 VCIIGPSGSGKSTFLRcmNALETVSEGEVVVNGFAAHDRT 69
                7899*********97533899*************998765 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.7e-05     0.054      31      59 ..      20      47 ..       7      53 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.7e-05
                  EEEEGGGS-.SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 31 lvldlkkmashllvaGatgsGKStalntL 59
                  + +d+k+ +  + ++G +gsGKSt+l+ +
    CTQ28531.1 20 ISCDIKPQE-VVCIIGPSGSGKSTFLRCM 47
                  578889999.999*************987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00015     0.086       2      18 ..      29      45 ..      28      74 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00015
                CEEEEC-TTTCHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlq 18
                +v++ G++GsGK+t+l+
  CTQ28531.1 29 VVCIIGPSGSGKSTFLR 45
                89*************97 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00025      0.14      16      40 ..      23      47 ..      20     121 .. 0.83
   2 ?   -1.3   0.0         3   1.7e+03     121     170 ..     157     199 ..     147     208 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00025
    ATPase_2 16 erepneiyfiYGpegsGKtaLlkei 40
                + +p+e++ i Gp gsGK+++l+ +
  CTQ28531.1 23 DIKPQEVVCIIGPSGSGKSTFLRCM 47
                56799****************9854 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3
    ATPase_2 121 iiiiDelqklidlglngaellvkeLlnliesltkekhlcvviclsSeglf 170
                 i+++De   +     +   +lv + l+++++l +e  +++vi++ + g  
  CTQ28531.1 157 IMLFDEPTSAL----D--PELVGDVLEVMKNLASEG-MTMVIVTHEMGFA 199
                 66677766666....4..778888888888865554.4555555555555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00023      0.13       2      43 ..      29      68 ..      28      87 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00023
                EEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCHCCC CS
        cobW  2 vtvltGflGsGKTtLlnhllenraglklavivNefgevsiDa 43
                v+ + G+ GsGK+t+l+ + + +   +  v+vN f   ++D+
  CTQ28531.1 29 VVCIIGPSGSGKSTFLRCMNALETVSEGEVVVNGFA--AHDR 68
                67899**************999999999*****998..5554 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2     0.002       1.1      63      89 ..     154     180 ..     125     181 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.002
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                 +++++++DE  s lD+e +  +le+++
  CTQ28531.1 154 KPSIMLFDEPTSALDPELVGDVLEVMK 180
                 47899*****************99987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00042      0.24       2      25 ..      30      53 ..      29      84 .. 0.76
   2 ?   -2.1   0.0       7.3   4.1e+03      70      83 ..     201     214 ..     178     216 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00042
      AAA_28  2 ivitGgestGKTtlleaLaargyp 25
                ++i+G++++GK+t l+ ++a +++
  CTQ28531.1 30 VCIIGPSGSGKSTFLRCMNALETV 53
                89************9877765443 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 7.3
      AAA_28  70 aaankvlfcDrgll 83 
                   a++v+f+D g++
  CTQ28531.1 201 EVADRVIFIDQGVI 214
                 34566777776665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   0.00034      0.19       1      22 [.      30      51 ..      30      97 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00034
      AAA_18  1 IlltGtpGvGKttlakeLskrl 22
                +++ G++G+GK+t+ +  + ++
  CTQ28531.1 30 VCIIGPSGSGKSTFLRCMNALE 51
                79***********998776654 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00034      0.19       1      23 [.      32      54 ..      32      70 .. 0.78
   2 ?   -2.6   0.0       6.8   3.8e+03     112     134 ..     176     198 ..     156     208 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00034
  ATP_bind_1  1 vvGpaGsGKttfvgalseilelr 23
                ++Gp GsGK+tf + ++ + + +
  CTQ28531.1 32 IIGPSGSGKSTFLRCMNALETVS 54
                79**********99887765544 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.8
  ATP_bind_1 112 akiveeLesefalvvvyLvDsqr 134
                  +++++L+se+ ++v++  +  +
  CTQ28531.1 176 LEVMKNLASEGMTMVIVTHEMGF 198
                 34666777766666666555555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.038        21       1      16 [.      30      45 ..      30      87 .. 0.88
   2 ?    5.2   0.0     0.048        27      32      98 ..     127     184 ..     110     209 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.038
                EEEESSTTSSHHHHHH CS
         AAA  1 vllyGppGtGKTllak 16
                v+++Gp G GK+++ +
  CTQ28531.1 30 VCIIGPSGSGKSTFLR 45
                689*********9877 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.048
                 TTCSSSSTTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA  32 sellskyvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                 s+ ++ + +  +   ++ ++ a++ a kpsi+++DE  +    +          +v   l++++++ +
  CTQ28531.1 127 SDKRDAWPSSLSGGQQQRVAIARALAmKPSIMLFDEPTSALDPE----------LVGDVLEVMKNLAS 184
                 5555556666667777777788888888********87776666..........56666666666666 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00026      0.15       9      39 ..      26      56 ..      20     193 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00026
      AAA_19  9 kekvllvtaGpGtGKTrvlkhivallvelgg 39
                +++v++++++ G+GK++ l+++ al    +g
  CTQ28531.1 26 PQEVVCIIGPSGSGKSTFLRCMNALETVSEG 56
                6789***************998776444333 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00068      0.38       2      22 ..      30      50 ..      29      78 .. 0.85
   2 ?   -2.5   0.0       8.3   4.6e+03      65      88 ..     154     178 ..     141     209 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00068
                EEEE--SSSSHHHHHHHGGGG CS
       AAA_5  2 vlLvGppGtgKselaerlaaa 22
                v+++Gp+G+gKs++ + + a+
  CTQ28531.1 30 VCIIGPSGSGKSTFLRCMNAL 50
                89***********99887765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 8.3
                 G-SEEEEESGGG--.HHHHHHHHHH CS
       AAA_5  65 egeilvlDEverae.sevlnsLlsl 88 
                 +++i+++DE + a  +e ++ +l +
  CTQ28531.1 154 KPSIMLFDEPTSALdPELVGDVLEV 178
                 5566666665555444444444433 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00039      0.22       1      45 [.      29      70 ..      29      96 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00039
         PRK  1 vIgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldrae 45
                v+ + g+SG+Gk+t+ r ++ +     v   e+    f   dr  
  CTQ28531.1 29 VVCIIGPSGSGKSTFLRCMNALET---VSEGEVVVNGFAAHDRTT 70
                68899**********998865433...332233333333333333 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.13        73       2      14 ..      31      43 ..      30      79 .. 0.87
   2 ?    6.6   0.0    0.0091       5.1      73     128 ..     143     198 ..     126     211 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.13
        CobU  2 lvtGgarSGKSef 14
                 ++G++ SGKS+f
  CTQ28531.1 31 CIIGPSGSGKSTF 43
                699********98 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0091
        CobU  73 kevvLvDcltlwltnllleeeaekveekleeeveellealkelkatvvlVsnEvgl 128
                 ++v++  +l++  + +l++e +++ + +l  +v e+++ l++  +t+v+V+ E+g+
  CTQ28531.1 143 QRVAIARALAMKPSIMLFDEPTSALDPELVGDVLEVMKNLASEGMTMVIVTHEMGF 198
                 5666666677777778888777778889999999*******************997 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00054       0.3      26      48 ..      30      52 ..      18     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00054
                EEEEESTTSSHHHHHHHHHHHCS CS
     G-alpha 26 llllGqseSGKsTilkqlkllyk 48
                + ++G s+SGKsT+l+ +  l++
  CTQ28531.1 30 VCIIGPSGSGKSTFLRCMNALET 52
                6789************9998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 1809.94
//
Query:       CTQ28532.1  [L=254]
Description: Amino acid ABC transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-23   83.2   6.8    1.8e-23   83.2   6.8    1.5  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.031   14.5   0.1      0.068   13.4   0.1    1.5  1  DUF2754       Protein of unknown function (DUF2754)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.32   2.9e+03     113     140 ..      23      46 ..      14      49 .. 0.67
   2 !   83.2   6.8     2e-27   1.8e-23      19     183 ..      65     248 ..      34     250 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.32
  BPD_transp_1 113 glilafggllggavlleflgswpGlgtl 140
                   ++  +++ ++ g+++ ++lg    lg++
    CTQ28532.1  23 TIKCTIICVILGTLWGLTLG----LGRM 46 
                   55556677777777777777....7765 PP

  == domain 2  score: 83.2 bits;  conditional E-value: 2e-27
  BPD_transp_1  19 llrpliivllslPsfvlaillvlvf.......................vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGa 92 
                    +r+++ +++++P fv ++++ +++                         l + + ++l+ i++++l a++yv  i+ra+++s++k+++ea+ralG+
    CTQ28532.1  65 PVRFYVSAFRGTPLFVQIMVVHFALvplfinprdgllvtsglmsadfaRELRASYGAFLSCIVAITLNAGAYVSEIFRAGIQSIDKGQMEASRALGM 161
                   5788999999******88886655567779****************99777788889999************************************* PP

  BPD_transp_1  93 srwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   + w+++rkv+lP+a++ i++ l++++++++++++l++ +g    l +l   a   +   ++++ ++l++ ++++++++++  l+  l++r+
    CTQ28532.1 162 PWWKTMRKVILPQAFRRILPPLGNNAIAIVKDSSLASAIG----LADLAYAARTVSGAYATYWEPYLTISLVYWVITFLLAQLVNRLEKRF 248
                   ****************************************....9998888888777777778**************************97 PP

>> DUF2754  Protein of unknown function (DUF2754)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   7.6e-06     0.068      15      60 ..     197     243 ..     189     252 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.6e-06
     DUF2754  15 avalGlifilnGvvGllGfeakGwqty.avGlvtwvisfwiaGliir 60 
                 a a+Gl  +      + G  a  w+ y ++ lv wvi+f +a l+ r
  CTQ28532.1 197 ASAIGLADLAYAARTVSGAYATYWEPYlTISLVYWVITFLLAQLVNR 243
                 56777777777777778888999*999569*************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1976.00
//
Query:       CTQ28533.1  [L=255]
Description: Histidine-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-62  209.7   1.1    4.1e-62  209.5   1.1    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    7.6e-12   45.5   0.1    3.8e-10   40.0   0.1    2.4  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine
     0.0076   16.2   0.5      0.029   14.3   0.3    1.9  2  NMT1             NMT1/THI5 like
  ------ inclusion threshold ------
      0.019   15.3   0.0        0.1   12.9   0.0    2.1  1  LTD              Lamin Tail Domain


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.5   1.1   9.2e-66   4.1e-62       2     224 ..      27     246 ..      26     247 .. 0.95

  Alignments for each domain:
  == domain 1  score: 209.5 bits;  conditional E-value: 9.2e-66
                 EEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   2 rvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaskis 100
                 +vg+ ++y+Pf++++ +++l+Gfd+d++kaiak  g++v++v+++w+++++ l++g  Di+i++itit++R++ vdFs pyf a+q+++v  +d    s
  CTQ28533.1  27 TVGSGGTYRPFEFENSQKQLEGFDIDIIKAIAKAEGFDVKLVNTPWEGIFATLNTGDRDIIISGITITDKRKQMVDFSAPYFPAEQSIVVA-QD----S 120
                 89****************************************99***********************************************.54....3 PP

                 CHSSCGCGTTSEEEEETTSHHHHHHHHHHHC.TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE.ECGGCECEEEEEEETTTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 101 siksladLkgkkvgvqagstaeellkeelkk.gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv.eeplsseeyaiavrkgdse 197
                 +++sla Lk+ kvgv+++st +  + e l k +  i++fd+ + +lq+L ++ v a+v+d  v++y++k++p+k+++lv +++++ ++ +iav kg+se
  CTQ28533.1 121 QVDSLAALKNEKVGVVNSSTGDIVVSEVLGKnSTAIKRFDNTPLMLQELFEDGVSAAVGDVGVVKYYIKQHPEKQFKLVpDAKFERQYFGIAVAKGNSE 219
                 688889**************99777765555788999************************************************************** PP

                 HHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 198 LrkainkalaelkadgtlakisekWfg 224
                 L+ +in++l+++ adgt+aki++ Wf+
  CTQ28533.1 220 LLGKINAGLQKIVADGTYAKIYKTWFD 246
                 **************************7 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   8.4e-14   3.8e-10      23     113 ..      41     118 ..      32     120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 8.4e-14
                      -GGGGEESHHHHHHHHHHHHHT-EEEEEE-TT-----BETTTTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEEES CS
  Lig_chan-Glu_bd  23 egneryeGfcidLlkelakklgfkYelklvedgkyGskkekkkewnGmigellekkadlavapltitaeReevvdFtkpfmelgisilikk 113
                      ++++++eGf id++k++ak  gf+ +l               + w+G+   l +++ d++++ +tit +R+++vdF+ p+     si++ +
       CTQ28533.1  41 NSQKQLEGFDIDIIKAIAKAEGFDVKLVN-------------TPWEGIFATLNTGDRDIIISGITITDKRKQMVDFSAPYFPAEQSIVVAQ 118
                      45688******************988854.............36*************************************9999998765 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.12   5.5e+02     107     149 ..      53      92 ..      45     106 .. 0.76
   2 !   14.3   0.3   6.4e-06     0.029      75     144 ..     112     177 ..      59     198 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.12
                 HHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEET CS
        NMT1 107 llkallakdggdpsdvtlvnvggtslakalltgkvDaaiggye 149
                 ++ka+ +++g    dv+lvn+     ++ l tg  D +i g++
  CTQ28533.1  53 IIKAIAKAEGF---DVKLVNTPWEGIFATLNTGDRDIIISGIT 92 
                 67888888888...78888887777777888888888886665 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 6.4e-06
                 EEEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEE CS
        NMT1  75 sglivlkdsgikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaa 144
                 ++++v +ds+++s++ Lk  ++g+v+s+ ++++++++l k+    + + + +       ++l ++ v aa
  CTQ28533.1 112 QSIVVAQDSQVDSLAALKNEKVGVVNSSTGDIVVSEVLGKNSTAIKRFDNTPLM----LQELFEDGVSAA 177
                 6789999**********************************9987777776652....234555555555 PP

>> LTD  Lamin Tail Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.3e-05       0.1      30      95 ..      80     144 ..      75     158 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.3e-05
         LTD  30 NtsskavdLsgwkledasge.ytfpngtgtlaageyvvvwsgsgttsasngskasssavwnnggdav 95 
                 Nt++ ++ +sg +++d+ ++   f +     +a +++vv+++s+ +s+++ +++++ +v + +gd v
  CTQ28533.1  80 NTGDRDIIISGITITDKRKQmVDFSAP--YFPAEQSIVVAQDSQVDSLAALKNEKVGVVNSSTGDIV 144
                 9*****************998777555..7************9888777775555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1871.90
//
Query:       CTQ28534.1  [L=300]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-11   44.0   0.0    2.9e-11   43.3   0.0    1.3  1  SIS            SIS domain
    1.4e-08   34.6   0.0    4.5e-08   33.0   0.0    1.8  2  HTH_6          Helix-turn-helix domain, rpiR family
  ------ inclusion threshold ------
      0.029   14.4   0.1        5.7    7.0   0.2    2.6  2  SIS_2          SIS domain
      0.093   12.2   0.0       0.38   10.3   0.0    1.8  2  Lactamase_B_2  Beta-lactamase superfamily domain
       0.14   12.2   0.1       0.33   11.1   0.1    1.6  1  Spo0A_C        Sporulation initiation factor Spo0A C terminal
       0.15   12.5   0.7        1.4    9.4   0.2    2.4  2  DUF1318        Protein of unknown function (DUF1318)


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   9.7e-15   2.9e-11       1     110 [.     140     249 ..     140     270 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 9.7e-15
                 HHCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSS CS
         SIS   1 lLakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplaread 99 
                 lL++a+++ ++G+G+s+ +a++ a+ + +ig +++++  ++    ++l  ++++d++i+  +    ++ + ++++ak+ g ++i++T   +s  ++ea 
  CTQ28534.1 140 LLSDARQVGIFGIGASGILAEYTARLFSRIGLPAYVMNRTGFSLAEQLIGLQRGDVLIMMGQKSPHREGLTTLREAKRLGIPTILLTQAVDSRFSQEAQ 238
                 699***************************************99999**************************************************** PP

                 EEEEEEEECHC CS
         SIS 100 lalyinaepet 110
                 ++++++ +  +
  CTQ28534.1 239 VVIDVPRGGDS 249
                 ***99876655 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   1.5e-11   4.5e-08       8      72 ..      20      84 ..      15      89 .. 0.91
   2 ?   -1.8   0.0       1.1   3.2e+03      21      48 ..     110     136 ..      92     148 .. 0.57

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.5e-11
                HHH-----HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH--HHHH CS
       HTH_6  8 qskkekltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselklaLak 72
                + + ++l++  + ++ yi  + + + e +  ++A a + S+at+vr  + LGf G +elk +++ 
  CTQ28534.1 20 RARAHQLSPRLRAVVSYINDNREVVLEHTAMEIATATQTSDATVVRAIQALGFAGLRELKQTMER 84
                5677888888899***********************************************98875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
                 HHHHHHH-S---TT--HHHHHHHTT--H CS
       HTH_6  21 iaeyilaspdkaielsikalAkaaavSe 48 
                  ++++l+  + ++e+ ++ + + aav +
  CTQ28534.1 110 SIDFVLEGHQRVCEV-LSRVDNRAAVAQ 136
                 456666666665554.334444444444 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0019       5.7       8      56 ..     123     164 ..     118     182 .. 0.71
   2 ?    4.5   0.0     0.011        32      97     137 ..     186     226 ..     177     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0019
                 HHHHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSS CS
       SIS_2   8 eilerivetqaeaiekaaeliadslenggkvlvfGsGhSaalaeelaar 56 
                 e+l+r+   + +a+++a++l+ d+    ++v +fG G S +lae++a r
  CTQ28534.1 123 EVLSRV--DNRAAVAQAVALLSDA----RQVGIFGIGASGILAEYTA-R 164
                 566666..6667777777777766....56779**********9875.3 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.011
                 HHTT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE CS
       SIS_2  97 rlvrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlt 137
                 +l  l+ gDvL+ + ++      +  +++ak++g+++i lt
  CTQ28534.1 186 QLIGLQRGDVLIMMGQKSPHREGLTTLREAKRLGIPTILLT 226
                 456789******************************99776 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00013      0.38      67     134 ..      27      94 ..      10     118 .. 0.86
   2 ?   -0.7   0.0      0.29   8.6e+02      42      73 ..     204     236 ..     179     274 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00013
                    HHHCCTTCGHHHCHTTTTEEEEEE-TTSEEEECSTTEEEEEEEE-EE--C.TCCE-TTTSEEEEEECTT CS
  Lactamase_B_2  67 lavleanfvylaleeepavnvheldwgesfelgdggleitatparhksgr.rldrnagdtlGlrieggg 134
                    +  l+a  +y+++++e  ++++ +++ + ++  d+ + ++a++a +++g  +l++++++++G  +++++
     CTQ28534.1  27 SPRLRAVVSYINDNREVVLEHTAMEIATATQTSDATV-VRAIQALGFAGLrELKQTMERWFGTSVTSAE 94 
                    5578899999999999999999999999999998776.************89999999*******9554 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.29
                    HHHGGGGCCCCC--EEEEEE.EEHHHHHHCCTT CS
  Lactamase_B_2  42 DHlaglltlrelrpkklply.apkgvlavlean 73 
                     H +gl tlre +   +p +  ++ v +  +++
     CTQ28534.1 204 PHREGLTTLREAKRLGIPTIlLTQAVDSRFSQE 236
                    588999999994433466433666666665555 PP

>> Spo0A_C  Sporulation initiation factor Spo0A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00011      0.33      25      89 ..      34      95 ..      28     103 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
     Spo0A_C 25 elvledpellesitkelypevAkkykttpsrVeraIrhaIevaWekgnkekleelfgysinsekg 89
                  +++d++  e + ++   e+A   +t+ ++V raI+    +   ++ k+++e++fg s++s ++
  CTQ28534.1 34 VSYINDNR--EVVLEHTAMEIATATQTSDATVVRAIQALGFAG-LRELKQTMERWFGTSVTSAEK 95
                44444444..467777789*****************9665555.5556799******99987654 PP

>> DUF1318  Protein of unknown function (DUF1318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00047       1.4      30      68 ..      24      63 ..      17      82 .. 0.77
   2 ?    0.6   0.0      0.27     8e+02       6      26 ..     139     159 ..     134     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00047
     DUF1318 30 aa.aaearalvkaiNakRkavYteiAaknglsleevakla 68
                ++ +++ ra+v+ iN++R+ v +++A + ++ ++   +++
  CTQ28534.1 24 HQlSPRLRAVVSYINDNREVVLEHTAMEIATATQTSDATV 63
                4467899****************99977666655544444 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.27
     DUF1318   6 lkldeakaqGlvGetadGylg 26 
                 + l++a++ G+ G  a+G l+
  CTQ28534.1 139 ALLSDARQVGIFGIGASGILA 159
                 56899*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2286.98
//
Query:       CTQ28535.1  [L=325]
Description: putative iron compound ABC transport system periplasmic binding component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-18   67.1   0.0    2.2e-18   66.7   0.0    1.1  1  Peripla_BP_2    Periplasmic binding protein
  ------ inclusion threshold ------
      0.061   13.2   0.0       0.17   11.8   0.0    1.7  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
       0.12   12.3   0.4       0.66    9.9   0.3    2.3  2  DUF4224         Domain of unknown function (DUF4224)


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   3.6e-22   2.2e-18      47     216 ..     105     268 ..      87     294 .. 0.86

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 3.6e-22
                   SSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS-EEE----TTSHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT.-EEEEEE CS
  Peripla_BP_2  47 dgeidvEklaalkPDlvilskglgltdedeellksgiptvivessntgeslkeqiralgellgledeaeklvaeidsklaaaksaidsekpkpvlvf 143
                     +id+E++aa++PDl+i  ++    +   e+l++++ptv  +  +   s  e  r l++l+g++ +   l  ++++ + ++k+ ++   +  v v 
    CTQ28535.1 105 TADIDLEAVAAARPDLIITEPSR---HVSVEQLEKIAPTVSIDHLQ--GSAPEIYRKLAQLTGTQPRLAILERRYQEQIKQLKAMVNPP-QYSVSVI 195
                   5689*****************99...9999***************9..*****************************************.7777777 PP

                   EETTE..EEEE-TTSTTTHHHHTS--EES..TTT--STT-EEE-HHHHHHH--SEEEEEEHHHHT-S--HHHHT- CS
  Peripla_BP_2 144 ggadeggyvvagsnsyigdlldalgieni..aaeskkseyeeisaEqilasdpdvifvsgraeadnktgleflke 216
                     a++g ++v +s++  g +l+++g++    ++  + ++++++saEq+ + d+d +f ++r ++   + +++l++
    CTQ28535.1 196 Q-ANNGKVTVHHSYHALGRVLRDAGFRFPplIERIPDGQRIDVSAEQLPELDADFVFATWR-SDTGGKPQDELQA 268
                   6.7777*****************9876544399999*************************.5555555555555 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.8e-05      0.17       3      54 ..     156     205 ..     155     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.8e-05
  YdaS_antitoxin   3 kaieivGgqkaLAealgvsqqaVsqWlkgkkqvpaervpeIekatnGeVtre 54 
                     k++++ G+q++LA +    q+++ q+ +     p+++ +++ +a nG+Vt +
      CTQ28535.1 156 KLAQLTGTQPRLAILERRYQEQIKQLKA--MVNPPQYSVSVIQANNGKVTVH 205
                     677899********************75..3469****************98 PP

>> DUF4224  Domain of unknown function (DUF4224)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00011      0.66       7      26 ..     157     184 ..     156     187 .. 0.95
   2 ?   -1.9   0.0      0.54   3.3e+03      21      30 ..     213     222 ..     210     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00011
     DUF4224   7 laeLTGyk........rrsaQakwLran 26 
                 la+LTG++        r++ Q+k+L+a+
  CTQ28535.1 157 LAQLTGTQprlailerRYQEQIKQLKAM 184
                 89************************98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.54
     DUF4224  21 kwLranGipf 30 
                 ++Lr  G++f
  CTQ28535.1 213 RVLRDAGFRF 222
                 6899999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 2695.41
//
Query:       CTQ28536.1  [L=350]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-80  268.3  34.5      9e-80  268.0  34.5    1.0  1  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.0  34.5     5e-84     9e-80       2     312 .]      37     345 ..      35     345 .. 0.98

  Alignments for each domain:
  == domain 1  score: 268.0 bits;  conditional E-value: 5e-84
       FecCD   2 lllllllslllgavkispsevfeallgka..dsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgsl 98 
                 ll+l l+sl+ g++++++s++ +all+ +   ++ ++i++++rlpr+l+all+Ga+L++aGa +Q++trN LadP+++G+++ga++++++++l++ ++ 
  CTQ28536.1  37 LLALGLYSLSRGSYPLPASTLARALLAPQemGEQPRFILFDIRLPRILMALLCGAMLGLAGAAMQSITRNGLADPGLIGVKEGASIVVLALVLFF-PAV 134
                 678999********************98888999999*******************************************************998.*** PP

       FecCD  99 slfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvlllllllllllla 197
                 +l++ pla ++g+++++llvl+la   +  s+ ++iL+Gi vs  l+a++ +++++++ ++++++++wl+Gsl+ a+w  ++++++++l ++++l++ a
  CTQ28536.1 135 GLVWRPLAGMVGGIVVALLVLTLA---RDCSRPRFILIGIGVSWSLAAAVGIFMTTADVRDVQTAMIWLAGSLQAATWPLLAVAFCWALPGAIILFCTA 230
                 ************************...99********************************************************************** PP

       FecCD 198 rkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgi 296
                 r  d+  lgd+tA  lGv+ +++++l +++ +llt+++v+ vG +gFvGL++Ph+ar+++     +ll+ sal+Gall+l++d+l+rl+++p ++p+gi
  CTQ28536.1 231 RAADVALLGDRTAIGLGVRLQQLTVLRFFAPVLLTSASVSCVGSLGFVGLMAPHMARFVLRGGQVSLLCGSALIGALLVLATDTLGRLAFAPLQIPAGI 329
                 *************************************************************************************************** PP

       FecCD 297 vtaliGapffiylllr 312
                 v+al+G pff++ll+r
  CTQ28536.1 330 VIALVGCPFFVVLLWR 345
                 *************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2559.39
//
Query:       CTQ28537.1  [L=341]
Description: iron-enterobactin transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-83  278.9  37.3      5e-83  278.7  37.3    1.0  1  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.7  37.3   2.8e-87     5e-83       1     312 []      25     338 ..      22     338 .. 0.97

  Alignments for each domain:
  == domain 1  score: 278.7 bits;  conditional E-value: 2.8e-87
       FecCD   1 llllllllslllgavkispsevfeallgka.dsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlallll.lgs 97 
                 ll+++ l+ l lga +i p++v++all+ +  ++e+ i+++lrl r++aall+GaaL+vaG+llQtv+rNpL +P+ilG+++ga+l++v++ +l+ +++
  CTQ28537.1  25 LLIAASLVHLGLGARWIAPQTVLRALLEYDpRNFEQRIIIDLRLVRLAAALLTGAALGVAGLLLQTVIRNPLGEPHILGLNAGASLAVVATSALGlSFG 123
                 5778889999*****************999999*************************************************************99888 PP

       FecCD  98 lslfalplaaflgallalllvllla.rkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvlllllllllll 195
                 +  ++ pl a  ga l ++ v++la  +r+ga+pl++ L+G+a+s ++sa+t+++l+l +e++l ++++wl+G+l+g +w ++  +lv +l++l ++ll
  CTQ28537.1 124 AFPAGRPLTAACGAGLLFGGVMALAsAGRGGATPLRITLCGVALSGFASAVTAAILIL-DEQTLLAMRTWLAGDLAGLNWCTLQTALVPALIGLGVALL 221
                 8889999999999999999999998899****************************99.**************************************** PP

       FecCD 196 larkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpv 294
                 +a +l++lalgd++A  lGvn  ++rll ll++all+++ava++GpigFvGL+vPh++r+lv +d r  lpl+a +Gal l+lad++ar+l++p+el +
  CTQ28537.1 222 IAPRLNVLALGDKVALGLGVNLVQTRLLGLLAIALLCGAAVAVAGPIGFVGLVVPHMVRRLVTEDIRLALPLAAPVGALALVLADIAARTLVAPQELAT 320
                 *************************************************************************************************** PP

       FecCD 295 givtaliGapffiylllr 312
                 g++tal+Gap+fi++ +r
  CTQ28537.1 321 GAMTALVGAPLFIFIAAR 338
                 **************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2756.79
//
Query:       CTQ28538.1  [L=273]
Description: iron-enterobactin transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-29  101.0   0.0    9.9e-29  100.6   0.0    1.2  1  ABC_tran         ABC transporter
    6.3e-10   39.3   0.2    7.9e-05   22.6   0.0    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      5e-07   29.4   0.0      0.023   14.1   0.1    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
    2.5e-05   23.9   0.3    5.1e-05   22.9   0.3    1.5  1  AAA_29           P-loop containing region of AAA domain
    4.9e-05   22.7   0.1    8.1e-05   22.0   0.1    1.2  1  Zeta_toxin       Zeta toxin
    0.00029   21.3   0.2    0.00092   19.6   0.2    1.8  1  AAA_16           AAA ATPase domain
    0.00035   20.4   0.0      0.002   17.9   0.0    1.8  2  AAA_15           AAA ATPase domain
    0.00056   19.7   0.0     0.0009   19.0   0.0    1.4  1  AAA_30           AAA domain
     0.0018   17.9   0.2      0.006   16.2   0.1    1.9  2  AAA_25           AAA domain
     0.0021   18.6   0.3     0.0034   17.9   0.3    1.2  1  AAA_23           AAA domain
     0.0021   18.2   0.1     0.0078   16.4   0.0    1.9  2  AAA_33           AAA domain
     0.0026   16.6   0.4        0.2   10.4   0.4    2.2  2  ABC_ATPase       Predicted ATPase of the ABC class
     0.0095   15.9   0.1      0.015   15.2   0.1    1.3  1  RsgA_GTPase      RsgA GTPase
  ------ inclusion threshold ------
      0.014   15.3   0.6      0.026   14.4   0.1    1.7  2  NACHT            NACHT domain
      0.041   14.1   0.4        0.2   11.9   0.1    2.1  2  AAA_22           AAA domain
       0.05   13.5   0.1      0.077   12.9   0.1    1.3  1  APS_kinase       Adenylylsulphate kinase
       0.07   12.7   0.0       0.11   12.0   0.0    1.3  1  AAA_27           AAA domain
      0.098   11.7   0.1       0.16   11.0   0.1    1.3  1  T2SSE            Type II/IV secretion system protein
        0.1   12.5   0.1        0.2   11.6   0.1    1.5  1  NTPase_1         NTPase
       0.11   11.9   0.1       0.17   11.2   0.1    1.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.11   11.9   0.1       0.16   11.3   0.1    1.2  1  FtsK_SpoIIIE     FtsK/SpoIIIE family
       0.12   12.7   0.4       0.52   10.5   0.1    2.0  2  AAA_28           AAA domain
       0.14   11.7   0.8       0.29   10.7   0.5    1.6  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.14   11.9   0.2        3.1    7.5   0.0    2.1  2  ATP_bind_1       Conserved hypothetical ATP binding protein
       0.16   12.0   0.6       0.86    9.6   0.1    2.2  2  AAA_5            AAA domain (dynein-related subfamily)
       0.18   11.5   0.1       0.37   10.5   0.1    1.9  2  AAA_24           AAA domain
       0.19   11.4   0.1       0.44   10.2   0.1    1.6  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.22   12.0   0.2       0.57   10.7   0.1    1.7  1  AAA_18           AAA domain
       0.23   11.5   0.1       0.56   10.2   0.1    1.7  2  AAA_14           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   1.6e-31   9.9e-29       2     136 ..      28     175 ..      27     176 .. 0.94

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 1.6e-31
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTC.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxx.. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..............esdee.. 84 
                 ++++l++  g+++++ G nG+GKStLl+++a++lkp  G ++ldg+ +++ +++ +++++g+lpq p   ++ltv e               +s+++  
  CTQ28538.1  28 DDINLTIPTGKMTVLAGANGSGKSTLLSTIARMLKPLGGCVRLDGQAIHQMPTKTVSRQLGILPQSPLTPEGLTVFELvsrgrypwqglmrqWSEADel 126
                 89****************************************************************************9*******9999884444445 PP

                 .HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 .iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  +e+al+  g  e+++ +v     sLSgGq+qr  +a+al+++   +llDEpt
  CTQ28538.1 127 aVEEALRLTGTAEFAHLPV----DSLSGGQRQRCWIAMALAQQTATILLDEPT 175
                 6999999999999999999....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.3e-07   7.9e-05       1      23 [.      39      61 ..      39     101 .. 0.84
   2 !   15.1   0.1   2.5e-05     0.015     232     292 ..     143     200 ..     114     210 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.3e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldlla 23
                ++vl G+NgsGKS+LL ++  + 
  CTQ28538.1 39 MTVLAGANGSGKSTLLSTIARML 61
                69*****************7774 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.5e-05
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv 292
                 lp+++lS G+++  + +++ l++    +++l+DEp + L+ + +  +lell  l+r+ +  
  CTQ28538.1 143 LPVDSLSGGQRQR-CWIAMALAQQT--ATILLDEPTTWLDLRYQVDILELLQTLTREHGRT 200
                 79999********.99*99999888..9***********************7777744333 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   3.7e-05     0.023      24      45 ..      37      58 ..      28      63 .. 0.84
   2 !   13.4   0.0   6.1e-05     0.038     118     197 ..      75     204 ..      57     225 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.7e-05
                SSEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAil 45
                 ++t++ G+NGSGKs ll  i 
  CTQ28538.1 37 GKMTVLAGANGSGKSTLLSTIA 58
                469**************99986 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 6.1e-05
                 E-HHHHHHHHHCTT-STT......................................................CS-HHHHHHHHHHHHHHHHCCS--SEE CS
                 xxxxxxxxxxxxxxxxxx......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 118 vtkkevsellesagiske......................................................lLSgGektLvalaLlfAiqkvkpaply 162
                 +++   + + ++ gi ++                                                      +LSgG+++ + +a+ +A q    ++  
  CTQ28538.1  75 IHQMPTKTVSRQLGILPQspltpegltvfelvsrgrypwqglmrqwseadelaveealrltgtaefahlpvdSLSGGQRQRCWIAMALAQQ----TATI 169
                 5555555555555555555555556666666666666666666666666666666666666666666666669***********9999855....5678 PP

                 EECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 163 llDeidaaLDeknvkkvaellkeksknaQfivisl 197
                 llDe    LD ++   + ell++ + +    v+++
  CTQ28538.1 170 LLDEPTTWLDLRYQVDILELLQTLTREHGRTVVTV 204
                 9*********************8877755444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.3   8.2e-08   5.1e-05      18      48 ..      33      63 ..      26      68 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 8.2e-08
      AAA_29 18 eidlkg.atlltGpsGsGKSTllDAiqalLvp 48
                +i   g +t+l+G++GsGKSTll  i+ +L p
  CTQ28538.1 33 TIP-TGkMTVLAGANGSGKSTLLSTIARMLKP 63
                555.4459***************999988876 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   1.3e-07   8.1e-05      17      54 ..      38      75 ..      26      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.3e-07
  Zeta_toxin 17 klillgGqpGAGKselaellkdelerqgnvvrldpDdl 54
                k+ +l+G+ G+GKs+l++ +++ l++ g++vrld+  +
  CTQ28538.1 38 KMTVLAGANGSGKSTLLSTIARMLKPLGGCVRLDGQAI 75
                7899******************************8766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.2   1.5e-06   0.00092      23     123 ..      36     160 ..      26     217 .. 0.51

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.5e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqllde...........................aesae 93 
                 ++ +++l G+ G+GKs+l+ +++r l+  gg + l g++ +    +p  ++ ++l   ++l q                               +e a 
  CTQ28538.1  36 TGKMTVLAGANGSGKSTLLSTIARMLKPLGGCVrLDGQAIHQ---MPTKTVSRQL---GILPQSPLTpegltvfelvsrgrypwqglmrqwseaDELAV 128
                 45899******************8777775444566666666...2322222222...22222222222222233333333333322222211122222 PP

      AAA_16  94 leawrekleeala..............avpelagaeasrllell 123
                             +              +v++l+g +++r + ++
  CTQ28538.1 129 ------------EealrltgtaefahlPVDSLSGGQRQRCWIAM 160
                 ............13333445555668866666666664444432 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.2e-06     0.002      18      50 ..      33      64 ..      29      92 .. 0.76
   2 ?    0.1   0.0      0.84   5.2e+02     291     358 ..     142     199 ..     114     204 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.2e-06
      AAA_15 18 eidlseeltvliGkNnsGKSsilealdlFlnnk 50
                +i+  + +tvl G+N+sGKS++l  +  +l+  
  CTQ28538.1 33 TIPTGK-MTVLAGANGSGKSTLLSTIARMLKPL 64
                566667.9******************9999865 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.84
      AAA_15 291 elplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQ 358
                  lp++  + G+++  ++++ ++              +l++EP + L    q  + +ll+ l +++   
  CTQ28538.1 142 HLPVDSLSGGQRQRCWIAMALAQQTAT---------ILLDEPTTWLDLRYQVDILELLQTLTREHG-R 199
                 688999999999999999887765555.........999999888888888888888888877775.5 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.5e-06    0.0009      18      97 ..      37     131 ..      22     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.5e-06
      AAA_30  18 drvavltGpAGtGKttalkalreaweaag..grviglAptgkaAkvLaeelgi........eastiakllkrlk.....grarlepgtllivDEa 97 
                  +++vl G+ G+GK+t+l++++++++  g   r+ g A  +   k+++++lgi        e+ t+ +l++r +      + ++++++ l v Ea
  CTQ28538.1  37 GKMTVLAGANGSGKSTLLSTIARMLKPLGgcVRLDGQAIHQMPTKTVSRQLGIlpqspltpEGLTVFELVSRGRypwqgLMRQWSEADELAVEEA 131
                 3599************************8465666899999999999999998777777778888888887777887773356677777777777 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   9.7e-06     0.006      29      54 ..      33      58 ..      26      68 .. 0.90
   2 ?   -3.4   0.0       9.8     6e+03      58      71 ..     256     269 ..     248     271 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.7e-06
      AAA_25 29 llpagelallaGapgtGKttlaldla 54
                 +p g+ ++laGa g+GK+tl++ +a
  CTQ28538.1 33 TIPTGKMTVLAGANGSGKSTLLSTIA 58
                689******************99887 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.8
      AAA_25  58 atGkpwlgpvapeq 71 
                  tGkp++ p++ +q
  CTQ28538.1 256 QTGKPFFMPFRARQ 269
                 48999999887776 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.3   5.5e-06    0.0034      17      40 ..      32      58 ..      24      68 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.5e-06
      AAA_23 17 F...skgltlItGpNGaGKTTildAik 40
                +     ++t++ G NG+GK+T+l  i 
  CTQ28538.1 32 LtipTGKMTVLAGANGSGKSTLLSTIA 58
                44456689***************8876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.3e-05    0.0078       2      36 ..      40      78 ..      39     138 .. 0.84
   2 ?   -0.5   0.0         2   1.3e+03      17      33 ..     160     186 ..     152     243 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.3e-05
      AAA_33  2 vllvGlpGsGKstlaerllkklg....avllssdtlrrr 36
                ++l G++GsGKstl+  +++ l+    +v+l+  +++++
  CTQ28538.1 40 TVLAGANGSGKSTLLSTIARMLKplggCVRLDGQAIHQM 78
                6899**********9988666666669999998887764 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2
      AAA_33  17 erllkklgavllssdt..........l 33 
                   l+++++++ll+++t          +
  CTQ28538.1 160 MALAQQTATILLDEPTtwldlryqvdI 186
                 456666667777777643333333330 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.4   0.00033       0.2     240     266 ..      32      59 ..      30      62 .. 0.92
   2 ?    4.1   0.0     0.026        16     324     357 ..     149     182 ..     137     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00033
                 EEE-SS.EEEEEE-TTSSHHHHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAlek 266
                 + ip+G +t+++G +  GKsTLL+ +++
  CTQ28538.1  32 LTIPTGkMTVLAGANGSGKSTLLSTIAR 59 
                 679**99****************99975 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.026
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH- CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmi 357
                 SG   q  +i+ al  ++ ++L+DE t+   l +
  CTQ28538.1 149 SGGQRQRCWIAMALAQQTATILLDEPTTWLDLRY 182
                 9999999******************998666655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   2.4e-05     0.015      97     122 ..      34      60 ..       8      88 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.4e-05
                  CTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  97 lkd.ktsvlvGqSGvGKStLinallpe 122
                  +   k++vl+G  G GKStL+ +++  
   CTQ28538.1  34 IPTgKMTVLAGANGSGKSTLLSTIARM 60 
                  44449****************999875 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   4.3e-05     0.026       3      25 ..      40      62 ..      38      90 .. 0.89
   2 ?   -2.9   0.0       8.8   5.4e+03      20      28 ..     158     166 ..     147     202 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.3e-05
                EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  3 vilqGeaGsGKTtLlqklalawa 25
                 +l G++GsGK+tLl  +a+ ++
  CTQ28538.1 40 TVLAGANGSGKSTLLSTIARMLK 62
                6899**************99876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.8
                 HHHHHCTS- CS
       NACHT  20 lalawaegk 28 
                 +a+a+a+++
  CTQ28538.1 158 IAMALAQQT 166
                 333333332 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00033       0.2       5      29 ..      37      61 ..      34      87 .. 0.91
   2 ?   -0.4   0.0       2.1   1.3e+03      90     116 ..     165     194 ..     123     207 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00033
      AAA_22  5 agilvvtGesGtGKTtllrrlleql 29
                 +++v+ G  G+GK+tll ++++ l
  CTQ28538.1 37 GKMTVLAGANGSGKSTLLSTIARML 61
                6899***************999887 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 2.1
      AAA_22  90 avielliiDEaqh.lr...seealeeLrsll 116
                 ++ + +++DE    l+   + ++le L +l 
  CTQ28538.1 165 QT-ATILLDEPTTwLDlryQVDILELLQTLT 194
                 33.4555555555554433355555555554 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00012     0.077       4      43 ..      39      77 ..      36      89 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
                EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTT CS
  APS_kinase  4 vvwltGlsgsGKstianalekkLvekgisvylLdGdnvRh 43
                +  l+G  gsGKst+  +++++L+  g  +++LdG+ + +
  CTQ28538.1 39 MTVLAGANGSGKSTLLSTIARMLKPLGG-CVRLDGQAIHQ 77
                56799******************99995.779****9976 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00018      0.11      17      50 ..      30      61 ..      20      76 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
      AAA_27 17 rsldfsaeeadlhliyGpNEAGKstalrAisdll 50
                 +l+++  + +++++ G+N +GKst+l+ i ++l
  CTQ28538.1 30 INLTIP--TGKMTVLAGANGSGKSTLLSTIARML 61
                445554..7899*****************99876 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00026      0.16     122     154 ..      30      62 ..       4      69 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00026
       T2SSE 122 lrkavrerglilvsGgTgsGKttllyallkein 154
                 ++  + + ++ +++G+ gsGK+tll ++  +++
  CTQ28538.1  30 INLTIPTGKMTVLAGANGSGKSTLLSTIARMLK 62 
                 55566677899***************9988775 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00032       0.2       3      27 ..      41      65 ..      39      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00032
                EEE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1  3 fiTGppGvGKtTlvkkvlellkssg 27
                ++ G  G+GK+Tl++ ++++lk  g
  CTQ28538.1 41 VLAGANGSGKSTLLSTIARMLKPLG 65
                689******************9775 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00028      0.17      16      67 ..      31      82 ..      17     102 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
  Mg_chelatase 16 eiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkk 67
                  ++++  g   +l+G+ GsGK+ l + ++ +l pl     l+ ++i+ + +k+
    CTQ28538.1 31 NLTIPTGKMTVLAGANGSGKSTLLSTIARMLKPLGGCVRLDGQAIHQMPTKT 82
                  555555667789**********************999999999998776644 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00026      0.16      35      59 ..      29      57 ..       9      61 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00026
                  GGGS-.....SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 35 lkkma....shllvaGatgsGKStalntL 59
                   ++ +      +++aGa gsGKSt l t+
    CTQ28538.1 29 DINLTiptgKMTVLAGANGSGKSTLLSTI 57
                  44444445445699************986 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00085      0.52       3      22 ..      41      60 ..      39      76 .. 0.88
   2 ?   -0.1   0.0       1.6   9.8e+02     128     155 ..     177     204 ..     126     209 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00085
      AAA_28  3 vitGgestGKTtlleaLaar 22
                v+ G+ ++GK+tll+ +a++
  CTQ28538.1 41 VLAGANGSGKSTLLSTIARM 60
                899************99975 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.6
      AAA_28 128 redleereaiderlrealrelgipviiv 155
                 + dl++  +i e+l+ + re+g  v+ v
  CTQ28538.1 177 WLDLRYQVDILELLQTLTREHGRTVVTV 204
                 4466777778888888888888888877 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   0.00047      0.29       2      22 ..      39      59 ..      38      66 .. 0.88
   2 ?   -2.4   0.0       4.8     3e+03     137     151 ..     210     224 ..     182     238 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00047
                EEEEEESTTCCHHHHHHHHHC CS
        cobW  2 vtvltGflGsGKTtLlnhlle 22
                +tvl+G  GsGK+tLl+++ +
  CTQ28538.1 39 MTVLAGANGSGKSTLLSTIAR 59
                699*************99875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.8
                 HHHHTSSEEEEE-HH CS
        cobW 137 dqlaaadllvlnKtD 151
                   +++adllv+ K  
  CTQ28538.1 210 FAVNYADLLVFLKQG 224
                 456677777776654 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0051       3.1       2      23 ..      43      64 ..      42      79 .. 0.81
   2 ?    2.4   0.0      0.18   1.1e+02     111     140 ..     186     216 ..     154     223 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0051
  ATP_bind_1  2 vGpaGsGKttfvgalseilelr 23
                +G  GsGK+t+ ++++ +l+  
  CTQ28538.1 43 AGANGSGKSTLLSTIARMLKPL 64
                799***********99988766 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.18
  ATP_bind_1 111 lakiveeLes.efalvvvyLvDsqrltdptk 140
                   +++++L++ ++++vv++L D +++ + ++
  CTQ28538.1 186 ILELLQTLTReHGRTVVTVLHDLNFAVNYAD 216
                 445889999999***********99988665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1    0.0014      0.86       3      23 ..      41      61 ..      39      89 .. 0.85
   2 ?   -0.0   0.0       1.3     8e+02      20      48 ..     159     187 ..     157     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0014
                EEE--SSSSHHHHHHHGGGGB CS
       AAA_5  3 lLvGppGtgKselaerlaaal 23
                +L G+ G+gKs+l   +a++l
  CTQ28538.1 41 VLAGANGSGKSTLLSTIARML 61
                799****************99 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.3
                 GGGBS--EEEEE--TT--HHHHH--B--. CS
       AAA_5  20 aaalnreveyvqltrdtteedlkgrreik 48 
                 a al +++ +++l + tt  dl+++++i 
  CTQ28538.1 159 AMALAQQTATILLDEPTTWLDLRYQVDIL 187
                 56778899999999999999999999984 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1    0.0006      0.37       2      25 ..      37      59 ..      36     207 .. 0.87
   2 ?   -3.0   0.0       8.2   5.1e+03     157     174 ..     238     255 ..     225     262 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0006
      AAA_24  2 klkiliyGpsgiGKTtlakelgpk 25
                +++ ++ G +g+GK+tl++++  +
  CTQ28538.1 37 GKMTVLAGANGSGKSTLLSTI-AR 59
                67899**************99.43 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.2
      AAA_24 157 anelkeevDlvlranlkr 174
                  +++k+ +D+ ++++++ 
  CTQ28538.1 238 PELIKHVFDVDVQMSINP 255
                 678999999999999875 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00071      0.44       2      21 ..      41      60 ..      40      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00071
  Viral_helicase1  2 vvhGvpGcGKStlirkllrt 21
                     v +G+ G+GKStl+ +++r+
       CTQ28538.1 41 VLAGANGSGKSTLLSTIARM 60
                     789***************99 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00092      0.57       2      22 ..      41      61 ..      41      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00092
      AAA_18  2 lltGtpGvGKttlakeLskrl 22
                +l+G+ G+GK+tl   ++++l
  CTQ28538.1 41 VLAGANGSGKSTLLSTIARML 61
                589**************9997 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00091      0.56       2      26 ..      37      61 ..      36      83 .. 0.87
   2 ?   -2.8   0.0       9.5   5.9e+03      64      74 ..     165     175 ..     155     203 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00091
      AAA_14  2 rkilvitGaRrvGKTtllkqlikel 26
                +k+ v+ Ga  +GK+tll ++++ l
  CTQ28538.1 37 GKMTVLAGANGSGKSTLLSTIARML 61
                6899***************999766 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 9.5
      AAA_14  64 kktylflDEiq 74 
                 ++  ++lDE  
  CTQ28538.1 165 QTATILLDEPT 175
                 55667777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2114.50
//
Query:       CTQ28539.1  [L=718]
Description: TonB-dependent siderophore receptor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-62  212.5  30.1    2.1e-62  212.5  30.1    1.5  1  TonB_dep_Rec  TonB dependent receptor
    1.3e-14   54.7   0.3    4.8e-14   52.8   0.3    2.1  1  Plug          TonB-dependent Receptor Plug Domain
  ------ inclusion threshold ------
      0.086   12.5   0.1       0.21   11.3   0.1    1.6  1  LRR_10        Leucine-rich repeat
      0.095   13.3   0.1       0.27   11.8   0.1    1.8  1  Laminin_G_2   Laminin G domain


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.5  30.1   4.7e-66   2.1e-62      14     469 ..     252     716 ..     241     717 .. 0.77

  Alignments for each domain:
  == domain 1  score: 212.5 bits;  conditional E-value: 4.7e-66
                   EEEEEEEEEEEETTTTEEEEEEE.....EEEEEEEEEECCCEECCC..EEECECCEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEE.... CS
  TonB_dep_Rec  14 llanngdylrytdggdlgsalsr.....gylgtnplyygdnysetd..nkrlrlgydydlddnlswklslraglnYs.stdgdsdynnsglgg.... 98 
                   + +  + +++y++++d g+ ++       + ++ + +++   + td  ++ ++l+++y l+d   w  ++r+ ++Ys +     +yn++  +     
    CTQ28539.1 252 TVTASYSHRDYSAPFDRGTIFDLntghaVNVDRKT-RFDEAFNITDgySDLAQLNAEYRLNDA--W--TARFDYSYSqD-----HYNDNQARVmayd 338
                   45555666667777777766666555553333333.555555555533666677777777777..*..99998888841.....2222222222222 PP

                   ..EEEEEEEE..CEEE..EEEEEEEEEEEEEEEEEE...EEEEEEEEEEEEEE...........EECCBEESCCTC.........CSEEEEEEEEEE CS
  TonB_dep_Rec  99 ..grsynrdn..dyyg..lgnvlaaeldlngdlwfG...snladgldyrklsd...........dgydaydplnps.........gdasdsvdrdsy 166
                     +++ +r+   +     +++ ++ ++dl+g++++G   + l +g+ y +++            +g++ y p++++         +d++ +++++sy
    CTQ28539.1 339 saTGNLTRRVdgT--HgsTQKMHSTRADLQGNVVVGgfyNELLTGVAYENYDLlrtdmlrcknvKGFNIYHPVYGTldtcntvsaSDSDQRIQQESY 433
                   2233333333323..1458888999999999988888887777777777644444468999999999999999999********99*********** PP

                   EEEEEEEEEEETTEEEEEEEEEEEETTCSSSS.....EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEECCCCCEEEECSTT- CS
  TonB_dep_Rec 167 glyaqdnikltdrltltlGlRydhysvfgkdlrag..afsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggsngaggalsngnpdL 261
                   ++y+qd + ltd++ +++G+Ry++y+++++++r    + ++++ +++P++gl+y++t+++sl+a+++++f  P+ +  ++           +g   L
    CTQ28539.1 434 AAYVQDALYLTDNWIAVAGVRYQYYTQYAGKGRPFnvNTDSRDEKWTPKAGLVYKVTPNVSLFANVAQSFM-PQSSIASY-----------IGE--L 516
                   ****************************999888899999999****************************.99999999...........899..* PP

                   --EEEEEEEEEEEEEE.TTEEEEEEEEEEEEEEEEEEESSSSCSTTTCSEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECECEEECT CS
  TonB_dep_Rec 262 kPEtsknyelGlkldd.drlnltlayFridiknfittdpdgpslgglgdfqyqNvgkarikGvElelsyrltpgWglglsgggytYydagddsdadd 357
                    PE+s++ye+G k+d  + +++++a+F+i+ +n+++t + g+       ++  ++gk+r++GvE++l++++t+++++   ++ y Y+da++ +d+d+
    CTQ28539.1 517 PPEESTSYEVGAKFDLlNGITANIALFDIHKRNVLYTESIGDE------TVAKTAGKVRSQGVEVDLAGSITDNLSV--IAS-YGYTDAKVLEDPDY 604
                   *************88899999*******************998......888899***************9998773..666.******999***** PP

                   TTTSSTTEESEEEEEEEEEECSEEEEEEEE..SEEEEEEECCSSEEEEECECCEEEE--EEEEEEEEEEEESSSE....EEEEEEESTTETCSCEEE CS
  TonB_dep_Rec 358 ggnplpnvPkhtanlgltYkfpaggWgagl..llagarYvavggrrygdaantfrrvpgYtlldlslgYklpknl....tlslgvnNLfdkryyass 448
                    g+plpnvPkht++l ltY ++++ ++ +   +++g+  v  ++ r+g++   + ++ gY++ d++++Yk +  l    tl+++v+NLfdk+yy+ss
    CTQ28539.1 605 AGKPLPNVPKHTGSLFLTY-DIHNVYNSNTltVGGGGHAV--SK-RSGTNGADY-YLQGYAVADVFAAYKMK--LqypvTLQVNVKNLFDKTYYTSS 694
                   *******************.44555553333322344332..44.344444444.9*************776..33455***********8766666 PP

                   STT.TTTCCEB--SEEEEEEEE CS
  TonB_dep_Rec 449 gyy.glggypgpgRtfrlglry 469
                       +lg+  g +R + +++++
    CTQ28539.1 695 IGTnNLGNQIGDPREVQFTVKM 716
                   666789999999*****99975 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.3   1.1e-17   4.8e-14       3     107 ..      77     173 ..      75     174 .. 0.91

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 1.1e-17
                 GCCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-G.GCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHCTT CS
        Plug   3 kdtpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgs.nrvlvlvDGvpianggsgagdlssidpedierievlkGpasaly 100
                  d+p+ v++v+   +e+q atsl++al +v++v   +++ gg+++ ++ RG+g+ ++  ++ +G++        + l     ++ er+evlkGpas+ly
  CTQ28539.1  77 LDIPQVVNTVSDRVLEDQHATSLDEALYNVANVVQ-TNTLGGTQDAFTRRGFGAnRDGSIMTNGLR--------TVLPRSFNAATERVEVLKGPASTLY 166
                 689*******************************6.******************777899*****8........55666667899************** PP

                 SSTGSSE CS
        Plug 101 GsdaigG 107
                 G   +gG
  CTQ28539.1 167 GILDPGG 173
                 *999998 PP

>> LRR_10  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   4.6e-05      0.21       5      45 ..     434     474 ..     430     492 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.6e-05
      LRR_10   5 aeyikDyiaLkeiWealdGknWsykGeespkGanWnFnkel 45 
                 a+y++D + L + W a+ G +++y+ +   kG  +n n + 
  CTQ28539.1 434 AAYVQDALYLTDNWIAVAGVRYQYYTQYAGKGRPFNVNTDS 474
                 78******************************999999874 PP

>> Laminin_G_2  Laminin G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1     6e-05      0.27      40     101 ..     317     375 ..     266     389 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6e-05
                  EEEEE-SSSS-ESSSSEEEEEEECTTEEEEEECTS--CCCE-CSS.......S.EEES--TT CS
  Laminin_G_2  40 dtellssgkklndgewHsveverkgknltlsvDggetseanepgesqgldleeslylGGlep 101
                  +   ++s+ + nd++  +   +  ++nlt +vDg + s++++++     dl++++++GG+  
   CTQ28539.1 317 RFDYSYSQDHYNDNQARVMAYDSATGNLTRRVDGTHGSTQKMHSTRA--DLQGNVVVGGF-Y 375
                  33344449999****************************99998776..8**********.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5378.84
//
Query:       CTQ28540.1  [L=257]
Description: Taurine import ATP-binding protein TauB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-32  112.5   0.0    3.1e-32  112.0   0.0    1.2  1  ABC_tran      ABC transporter
    3.8e-05   23.6   0.1      0.012   15.4   0.0    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0001   22.7   0.9    0.00036   20.9   0.8    2.0  1  AAA_16        AAA ATPase domain
    0.00011   22.2   0.0    0.00041   20.3   0.0    1.9  3  RsgA_GTPase   RsgA GTPase
    0.00054   20.2   0.0      0.001   19.4   0.0    1.5  1  AAA_22        AAA domain
     0.0029   17.3   0.0     0.0081   15.9   0.0    1.7  2  AAA_29        P-loop containing region of AAA domain
     0.0029   17.8   0.1       0.46   10.6   0.0    2.2  2  AAA_33        AAA domain
     0.0034   17.3   0.0     0.0058   16.6   0.0    1.3  1  Rad17         Rad17 P-loop domain
     0.0038   17.5   0.1      0.043   14.0   0.1    2.2  2  AAA_28        AAA domain
  ------ inclusion threshold ------
      0.024   14.6   0.1      0.055   13.5   0.1    1.6  1  AAA_5         AAA domain (dynein-related subfamily)
       0.04   14.5   0.1      0.067   13.7   0.1    1.6  1  AAA_18        AAA domain
      0.047   13.3   0.0       0.11   12.1   0.0    1.6  1  AAA_25        AAA domain
      0.051   13.0   0.0       0.08   12.3   0.0    1.3  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.055   13.4   0.0       0.12   12.2   0.0    1.6  1  NACHT         NACHT domain
      0.062   13.7   0.0       0.13   12.7   0.0    1.8  1  AAA           ATPase family associated with various cellular 
      0.071   13.2   0.0       0.13   12.4   0.0    1.4  1  MMR_HSR1      50S ribosome-binding GTPase
       0.14   11.8   0.1       0.99    9.1   0.0    2.3  3  IstB_IS21     IstB-like ATP binding protein
       0.19   12.1   0.0       0.45   10.9   0.0    1.6  1  RNA_helicase  RNA helicase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.0   3.1e-35   3.1e-32       1     136 [.      31     168 ..      31     169 .. 0.95

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 3.1e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...........esdeeieka 88 
                 l+n+sl+l++ge va++G++G+GKStLl+llagl+ p++G++++dg+ l          e   ++q+p+l p ltvr+n             +++++++
  CTQ28540.1  31 LENISLQLRPGESVALLGPSGCGKSTLLRLLAGLEAPQSGQMQIDGAALGA-----PGPERILVFQDPTLYPWLTVRQNvllgpqaqgkkGLEAKADAL 124
                 78*******************************************999988.....8888899*********************99888777888**** PP

                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++gl+ + +       ++LSgG+ qr alarall++p+llllDEp 
  CTQ28540.1 125 IDRIGLQAFSEAWP----RQLSGGMAQRAALARALLNEPRLLLLDEPL 168
                 ********998888....*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.3e-05     0.012       3      23 ..      45      65 ..      43      95 .. 0.80
   2 !    6.4   0.1     0.007         7     235     267 ..     139     168 ..     135     202 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
      AAA_21  3 vliGpNgsGKSnLLdaldlla 23
                +l Gp g+GKS+LL++l +l 
  CTQ28540.1 45 ALLGPSGCGKSTLLRLLAGLE 65
                799**************9994 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.007
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpE 267
                 r+lS G+ + +al+ all  +   +lll+DEp 
  CTQ28540.1 139 RQLSGGMAQRAALARALLNEP---RLLLLDEPL 168
                 799****99999999999988...*******95 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.8   3.6e-07   0.00036      24      52 ..      40      76 ..      30     197 .. 0.58

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.6e-07
      AAA_16 24 p.elvllsGesGvGKsslvrellralekd........g 52
                p e+v l G+sG+GKs+l+r l+  le+         g
  CTQ28540.1 40 PgESVALLGPSGCGKSTLLRLLA-GLEAPqsgqmqidG 76
                4489****************999.45554234444431 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   4.1e-07   0.00041      81     123 ..      22      65 ..       8      76 .. 0.82
   2 ?   -3.4   0.0       8.2   8.1e+03      93     113 ..      95     115 ..      93     118 .. 0.79
   3 ?   -2.1   0.0       3.2   3.2e+03      54      85 ..     169     200 ..     167     211 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4.1e-07
                  E--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  81 lvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpel 123
                  ++ ++t   le+++ +l+  + ++l+G+SG GKStL+  l++ +
   CTQ28540.1  22 TLGKQTVPVLENISLQLRPgESVALLGPSGCGKSTLLRLLAGLE 65 
                  56666777789999999988999****************99854 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.2
                  HHHHCTTSEEEEECSTTSSHH CS
  RsgA_GTPase  93 lkellkdktsvlvGqSGvGKS 113
                  l ++l+ +  vl+G+   GK 
   CTQ28540.1  95 LYPWLTVRQNVLLGPQAQGKK 115
                  667888899999999888885 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.2
                  E-GGG--HHHHHHHHHHHHHHTTSEEEE--TT CS
  RsgA_GTPase  54 nKiDlleeeeeleelkeelealgyevllvsak 85 
                   K+D l++ +  +el +  ++ gy+ llv  +
   CTQ28540.1 169 GKLDSLTRISMQRELIALWQQQGYTSLLVTHD 200
                  57777777776777777888888887777555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     1e-06     0.001       7      99 ..      43     166 ..      38     205 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee........erpevv.fvtlpsstsskdllrellralglelka..................erlsseel 78 
                 ++++ G+sG+GK+tllr l+     ++ + +        ++pe +  ++ p +  + ++++++l   + ++k+                  +++  ++l
  CTQ28540.1  43 SVALLGPSGCGKSTLLRLLAGLEAPQSGQMQidgaalgaPGPERIlVFQDPTLYPWLTVRQNVLLGPQAQGKKgleakadalidriglqafSEAWPRQL 141
                 78999**************99875554444499999999555555477777777899999999999999999999999999998888888866666666 PP

      AAA_22  79 l.ealeqalrarav...ielliiDE 99 
                    + ++a+ ara    ++ll++DE
  CTQ28540.1 142 SgGMAQRAALARALlnePRLLLLDE 166
                 6566666666666677788999998 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.1e-06    0.0081      17      39 ..      36      58 ..      31      78 .. 0.83
   2 ?   -2.7   0.0         5     5e+03      25      35 ..     104     114 ..      98     117 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.1e-06
      AAA_29 17 ieidlkgatlltGpsGsGKSTll 39
                +++++ +++ l GpsG GKSTll
  CTQ28540.1 36 LQLRPGESVALLGPSGCGKSTLL 58
                566666799*************8 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5
      AAA_29  25 tlltGpsGsGK 35 
                  +l Gp+  GK
  CTQ28540.1 104 NVLLGPQAQGK 114
                 56888888888 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00046      0.46       3      20 ..      45      62 ..      44      82 .. 0.88
   2 ?    5.3   0.0      0.02        20      47     111 ..     137     206 ..      83     211 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00046
      AAA_33  3 llvGlpGsGKstlaerll 20
                 l G++G+GKstl++ l+
  CTQ28540.1 45 ALLGPSGCGKSTLLRLLA 62
                578***********9876 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.02
      AAA_33  47 dytrvldrlyqilnelarkalsagrnvildat......nlsrrerarflklarrlgvpvrivvvetdeetl 111
                 ++ +++  + q+  +lar  l + r ++ld +      +++ + ++++++l++++g+  ++v+ +  e++l
  CTQ28540.1 137 WPRQLSGGMAQRA-ALARALLNEPRLLLLDEPlgkldsLTRISMQRELIALWQQQGYTSLLVTHDIEEALL 206
                 4445555555664.889999999999999**98888866666999***************99999988875 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.9e-06    0.0058      37      72 ..      33      68 ..      25      82 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.9e-06
       Rad17 37 advLesrkkriLLisGPsGCgkstvvkvLskelgik 72
                  +L+ r+ + + + GPsGCgkst ++ L+   +++
  CTQ28540.1 33 NISLQLRPGESVALLGPSGCGKSTLLRLLAGLEAPQ 68
                556666666667788**************9776665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   4.4e-05     0.043       2      20 ..      44      62 ..      43      74 .. 0.86
   2 ?    1.1   0.0      0.42   4.2e+02     134     162 ..     176     203 ..     138     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.4e-05
      AAA_28  2 ivitGgestGKTtlleaLa 20
                ++++G++++GK+tll+ La
  CTQ28540.1 44 VALLGPSGCGKSTLLRLLA 62
                89****************9 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.42
      AAA_28 134 reaiderlrealrelgipviivpsgdvee 162
                 r  +++ l++++++ g+  + v + d+ee
  CTQ28540.1 176 RISMQRELIALWQQQGYTSLLV-THDIEE 203
                 6778899999999999998888.888876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   5.5e-05     0.055       2      22 ..      44      64 ..      43      73 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.5e-05
                EEEE--SSSSHHHHHHHGGGG CS
       AAA_5  2 vlLvGppGtgKselaerlaaa 22
                v L+Gp+G+gKs+l + la +
  CTQ28540.1 44 VALLGPSGCGKSTLLRLLAGL 64
                78**************99865 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   6.7e-05     0.067       1      21 [.      44      64 ..      44     139 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.7e-05
      AAA_18  1 IlltGtpGvGKttlakeLskr 21
                ++l G++G+GK+tl + L+ +
  CTQ28540.1 44 VALLGPSGCGKSTLLRLLAGL 64
                6899**************755 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00011      0.11      30      54 ..      38      62 ..      16      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
      AAA_25 30 lpagelallaGapgtGKttlaldla 54
                l+ ge ++l G++g+GK+tl+  la
  CTQ28540.1 38 LRPGESVALLGPSGCGKSTLLRLLA 62
                456999**************86665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     8e-05      0.08      24     100 ..      43     116 ..      32     131 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkeeekllkrrpfraphhsaskaalvGggskpkpG 100
                   ++ l+Gp+G+GK+ l + l++l +p s + +++ a++ +      e+ l+ + p   p  ++ +  l+G +++ k+G
    CTQ28540.1  43 SVALLGPSGCGKSTLLRLLAGLEAPQSGQMQIDGAALGA---PGPERILVFQDPTLYPWLTVRQNVLLGPQAQGKKG 116
                   6889*******************9999999988877653...34577777777777777777777777777777766 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00012      0.12       3      21 ..      44      62 ..      42      73 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                v+l G++G+GK+tLl+ la
  CTQ28540.1 44 VALLGPSGCGKSTLLRLLA 62
                899************9887 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00013      0.13       2      20 ..      45      63 ..      44     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
                EEESSTTSSHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavak 20
                 l Gp G+GK++l + +a 
  CTQ28540.1 45 ALLGPSGCGKSTLLRLLAG 63
                699*************997 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00013      0.13       2      23 ..      44      65 ..      43      76 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
                EEEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgek 23
                va++G +  GKStL++ l g +
  CTQ28540.1 44 VALLGPSGCGKSTLLRLLAGLE 65
                89***************99854 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00099      0.99      45      64 ..      39      58 ..      18      71 .. 0.83
   2 ?   -1.2   0.0       1.5   1.5e+03      43      62 ..      98     116 ..      94     124 .. 0.81
   3 ?   -3.2   0.0       5.8   5.8e+03     163     171 ..     120     128 ..     118     134 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00099
   IstB_IS21 45 ekkenivllGpsGvGKshla 64
                +  e+++llGpsG GKs l 
  CTQ28540.1 39 RPGESVALLGPSGCGKSTLL 58
                55799***********9875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.5
   IstB_IS21  43 fiekkenivllGpsGvGKsh 62 
                 +++ ++n+ llGp   GK  
  CTQ28540.1  98 WLTVRQNV-LLGPQAQGKKG 116
                 88888986.67***999965 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.8
   IstB_IS21 163 latAilDRl 171
                  a+A++DR+
  CTQ28540.1 120 KADALIDRI 128
                 589999998 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00045      0.45       2      19 ..      45      62 ..      44      75 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00045
  RNA_helicase  2 wlyGpsgeGKStlakeLa 19
                   l Gpsg+GKStl + La
    CTQ28540.1 45 ALLGPSGCGKSTLLRLLA 62
                  589**********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1832.37
//
Query:       CTQ28541.1  [L=331]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-14   52.2  18.0    5.9e-14   52.2  18.0    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2      0.17     3e+03     127     158 ..      33      64 ..      23      76 .. 0.48
   2 !   52.2  18.0   3.3e-18   5.9e-14       5     169 ..     152     312 ..     134     323 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.17
  BPD_transp_1 127 lleflgswpGlgtllleailgydyseisnggv 158
                     +f+++wp  g+++  ++ +   ++++ gg+
    CTQ28541.1  33 GGLFTLTWPDAGRRWPFSEGWALAQFTLGGGL 64 
                   34455555555554444444444444443333 PP

  == domain 2  score: 52.2 bits;  conditional E-value: 3.3e-18
  BPD_transp_1   5 Gilaa..lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifr 99 
                   G++++     ++++ +++ p+  +l  +Ps +l++l +       i+ +++ + ++l++ls+ ++v++++ +++  ++k ++ +ar+lGas + ++ 
    CTQ28541.1 152 GFITGlaIGWSQRIGYWVHPVLRLLGPVPSTALLPLCL------FIFPSSFGASVFLIALSTWFPVTVLTWSGVMGIDKAWYDVARTLGASQRFLIL 242
                   4444455669999999********************99......789999999999999999999999999999*********************** PP

  BPD_transp_1 100 kvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavllln 169
                   +v++P+alp ++ gl++ +g+++   +++e++g ++G+g  l  a+ +  y++++++++++++++  l++
    CTQ28541.1 243 RVAIPAALPNVFVGLFMGLGASFSVLIVAEMVGVKSGIGFYLQWAQGWAAYPNMYAALLVMALLCSGLIS 312
                   ****************************************************888555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2598.36
//
Query:       CTQ28542.1  [L=345]
Description: putative ABC-type taurine transport system periplasmic binding component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-17   62.2   0.0    1.4e-16   60.9   0.0    1.5  1  NMT1_2          NMT1-like family
    4.8e-16   59.4   0.0    6.9e-16   58.8   0.0    1.2  1  NMT1            NMT1/THI5 like
     0.0053   16.4   0.0      0.022   14.4   0.0    1.9  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
  ------ inclusion threshold ------
      0.013   15.3   0.2      0.013   15.3   0.2    2.2  2  TAT_signal      TAT (twin-arginine translocation) pathway sig
      0.065   12.7   0.1       0.11   12.0   0.1    1.2  1  VitK2_biosynth  Menaquinone biosynthesis


Domain annotation for each model (and alignments):
>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0     4e-20   1.4e-16       7     243 ..      51     273 ..      46     281 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 4e-20
      NMT1_2   7 qlklGfia.ltdaaplvvakekglfakeGltvelekq.aswaelrdkllagelDaahvltpapllidlGiggakadmkvlaslnlnGqaitlsnklkdk 103
                 ++kl+ ++  ++ ap++va+++++f+k+ l+ve + + +s+ +l++++++g+ Da++    ++l + + +   ++ ++v ++  ++G ++ l       
  CTQ28542.1  51 KIKLAINKsAVCLAPVAVAEQQKIFSKYNLDVEFVNFgSSTDVLLEAIATGKADAGVG---MALRWLKAL---EQGFDVKLTAGTHGGCLNLLT----- 138
                 66677665246789******************9999836677899***********98...666666666...334455555555666666643..... PP

      NMT1_2 104 kvsdakalkdlvakkkas.kplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvtaltsqel 201
                    +++ +  l     +s k+ +i+vt   +  +  +  +L+ +G+dp +dv+  v p   +  +l +++i++  ++eP+ ++++  g  ++++ s+  
  CTQ28542.1 139 --AKDSPFGGL-----ESlKGQTIGVTDMAGPDKNFFAILLKRHGIDPISDVQWKVYPADLLSVALDKREIAAISGSEPFSYRLLETGK-YQLIASNMT 229
                 ..344555544.....222779***************************************************************9999.999977766 PP

      NMT1_2 202 ..wkdhPekvlgvredfveknpntaralvkalleAtkwldakke 243
                   + +  ++vlgv+ +++ +++ +a al++a+leA  +  a +e
  CTQ28542.1 230 gdYANLSCCVLGVSGSLARDHKPAAAALTQAILEAHSYAAAHPE 273
                 667999*******************************9997554 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   1.9e-19   6.9e-16       5     214 ..      64     273 ..      62     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 1.9e-19
                 HHHHHHHHTTHHHHTTEEEEEE--SSTTHH.HHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEEE-S.- CS
        NMT1   5 aglyvAkekGYFkeeGldVeivepadpsda.telvasgkadfgvsyqesllaarakglpvvsvaallqeplsglivlkdsgikspkDLkGkrigyvg.s 101
                 a++ vA+++  F + +ldVe+v  + ++d+ +e++a+gkad gv    + l a ++g++v+  a   +    +l++ kds+   +++LkG++ig++  +
  CTQ28542.1  64 APVAVAEQQKIFSKYNLDVEFVNFGSSTDVlLEAIATGKADAGVGMALRWLKALEQGFDVKLTAGT-HGGCLNLLTAKDSPFGGLESLKGQTIGVTDmA 161
                 7899******************99888887369***************************976665.5899999**********************988 PP

                 TTHHHHHHHHHHHTT--G.GG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT-----SEEEEEEHHHHHH-HHHHHHHH CS
        NMT1 102 pfekallkallakdggdp.sdvtlvnvggtslakalltgkvDaaiggyenwegvelesegkelrifaladlgvpdyyslvlitnekllkenpelvkkFl 199
                 + +k ++  ll+ +g+dp sdv+   +  + l+ al + ++ a+  g e +      + gk   i +    + +++   vl ++ +l+++++ +++++ 
  CTQ28542.1 162 GPDKNFFAILLKRHGIDPiSDVQWKVYPADLLSVALDKREIAAIS-GSEPFSYRL-LETGKYQLIASNMTGDYANLSCCVLGVSGSLARDHKPAAAALT 258
                 89**************87689999888777777799999999988.777754444.3555555555555555559************************ PP

                 HHHHHHHHHHHHSHH CS
        NMT1 200 rAlkkGyeyalahPe 214
                 +A+ ++  ya+ahPe
  CTQ28542.1 259 QAILEAHSYAAAHPE 273
                 **************8 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     6e-06     0.022      36     163 ..      88     205 ..      76     225 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6e-06
                     -SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS.-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCC CS
  Phosphonate-bd  36 atdyaavvealragqvDiaflgplayvqardqa.gveplatrvrsdGsasyrsviivradsdiqsledLkgktiafvspsStsGylvpaalLvke 129
                     +++ + + ea+++g++D +  ++l  ++a +q  +v+++a + +          +++++ds+   le Lkg+ti++++ +      + a lL k+
      CTQ28542.1  88 GSSTDVLLEAIATGKADAGVGMALRWLKALEQGfDVKLTAGTHG------GCLNLLTAKDSPFGGLESLKGQTIGVTDMAGPD-KNFFAILL-KR 174
                     55667899********************9988447777777776......3445999*********************99888.66777778.89 PP

                     CT--HHHHSSEEEE--HHHHHHHHHTTSSSEEEE CS
  Phosphonate-bd 130 agldpeddfsevfsgshdaavlavlsgdadaaav 163
                     +g+dp  d +    + ++a +l+v+ ++ + aa+
      CTQ28542.1 175 HGIDPISDVQW---KVYPADLLSVALDKREIAAI 205
                     99999766544...55666666666666666665 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.2   3.7e-06     0.013       2      21 ..       6      26 ..       5      29 .. 0.78
   2 ?   -3.3   1.7       2.8     1e+04      16      20 ..     253     257 ..     253     260 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.7e-06
  TAT_signal  2 lSRRdFLKgsAAaa.AAaalg 21
                +SRR FL+ s+++a A++ l+
  CTQ28542.1  6 FSRRRFLQLSGGLAlAGVSLP 26
                8*************4444476 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.8
  TAT_signal  16 AAaal 20 
                 AAaal
  CTQ28542.1 253 AAAAL 257
                 44444 PP

>> VitK2_biosynth  Menaquinone biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     3e-05      0.11     191     233 ..     249     290 ..     238     296 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
                     CCHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHCCSTTS.HHH CS
  VitK2_biosynth 191 dlaaeaakeleealreSveyalahldevaeyaaeraqemddev 233
                     d  + aa++l++a+ e+ +ya ah+++va+ ++++a  ++++ 
      CTQ28542.1 249 D-HKPAAAALTQAILEAHSYAAAHPESVAQSFLAHALNTSEAE 290
                     2.247889***************************99987644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2487.18
//
Query:       CTQ28543.1  [L=320]
Description: Aliphatic sulfonates family ABC transporter, substrate-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-16   58.6   0.0    1.1e-15   58.1   0.0    1.2  1  NMT1            NMT1/THI5 like
    1.1e-13   51.5   1.0    1.6e-13   50.9   1.0    1.2  1  NMT1_2          NMT1-like family
    4.9e-13   49.2   0.1      1e-12   48.2   0.1    1.5  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
    1.4e-11   44.2   0.0    7.5e-08   32.1   0.0    2.3  2  SBP_bac_3       Bacterial extracellular solute-binding protei
    3.4e-05   23.4   0.0    6.4e-05   22.5   0.0    1.4  1  NMT1_3          NMT1-like family


Domain annotation for each model (and alignments):
>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   3.2e-19   1.1e-15      35     157 ..      68     187 ..      55     229 .. 0.84

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 3.2e-19
                 HHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--.EEEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-H CS
        NMT1  35 telvasgkadfgvsyqesllaarakglpvvsvaallqepl.sglivlkdsgikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtsl 132
                  e++++g++d g+     ll a a g+pv+++a    +p  ++++v  +s +ks +DLkGkri++ +++++  +  + l+++g++p++v+ v  g  ++
  CTQ28543.1  68 AEALNAGAVDAGIIGDAPLLFALANGAPVKAIAVDKSNPAgTAVLVSPGSTLKSGADLKGKRIATGKGSIGHFVALKALEQAGISPKEVQWVFLGPVDA 166
                 57899***************************9766555435677777888***********************************************9 PP

                 HHHHHCTSSSEEECEETTTHHHHHH CS
        NMT1 133 akalltgkvDaaiggyenwegvele 157
                   all+g+vDa+     +we ++ +
  CTQ28543.1 167 KVALLNGSVDAWA----TWEPYTTQ 187
                 99********987....55555544 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   1.0   4.6e-17   1.6e-13      36     240 ..      55     242 ..      20     251 .. 0.83

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 4.6e-17
      NMT1_2  36 tvelekqaswaelrdkllagelDaahv.ltpapllidlGiggakadmkvlaslnlnGqaitlsnklkdkkvsdakalkdlvakkkaskplkiavtfpgs 133
                 +++++++ ++a l ++l ag +Da+++  +p+++++ +G    +++ +++ + n  G a+++s +      s+ k+ +dl       k+ +ia++  + 
  CTQ28543.1  55 DIKWAEFPAAAPLAEALNAGAVDAGIIgDAPLLFALANGA---PVKAIAVDKSNPAGTAVLVSPG------STLKSGADL-------KGKRIATGKGSI 137
                 5899***********************9999999999999...5555555556666778888876......777777777.......677888866555 PP

      NMT1_2 134 thdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvtaltsqelwkdhPekvlgvredfve..knpntaralvka 230
                  h ++l  +L++aG+ p ++v+ v + p ++  +l  g +d++++ eP+  q+v+ + G ++++ + l++++  ++l+++ + ++  +++++++  ++ 
  CTQ28543.1 138 GHFVAL-KALEQAGISP-KEVQWVFLGPVDAKVALLNGSVDAWATWEPYTTQMVKTNEGQILVSGKGLLPGN--TFLAATDSALNdpQKRAALQDYLQR 232
                 665555.689*******.**************************************************8874..5555555555423677889999*** PP

      NMT1_2 231 lleAtkwlda 240
                 l+ A++w  a
  CTQ28543.1 233 LAGAERWAYA 242
                 *******985 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.1   2.8e-16     1e-12      41     219 ..      66     235 ..      46     253 .. 0.86

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 2.8e-16
                     HHHHHHHTTS-SEEE--HHHHHHHHHH.S-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--H CS
  Phosphonate-bd  41 avvealragqvDiaflgplayvqardq.agveplatrvrsdGsasyrsviivradsdiqsledLkgktiafvspsStsGylvpaalLvkeagldp 134
                      ++eal ag vD + +g  + + a ++ a v+++a+ ++    +   ++++v ++s+++s +dLkgk+ia +  s   G+ v +  L ++ag+ p
      CTQ28543.1  66 PLAEALNAGAVDAGIIGDAPLLFALANgAPVKAIAVDKS----NPAGTAVLVSPGSTLKSGADLKGKRIATGKGS--IGHFVALKAL-EQAGISP 153
                     579*****************9997655489********8....99**************************9988..699999999*.9*****9 PP

                     HHHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH-HHHHTTEEEEEEEE.EEE--EEEEETT...S-HHHHHHHHHHHHH--- CS
  Phosphonate-bd 135 eddfsevfsgshdaavlavlsgdadaaavsadaledlvaegpedkdelrviassp.pipndpvvvrke...lseelkekiqdallslae 219
                     ++  + vf g  da v a+l+g +da a+++  ++++v+++     e +++ s + ++p+ ++++  +    +++ ++++qd+l  la 
      CTQ28543.1 154 KE-VQWVFLGPVDAKV-ALLNGSVDAWATWEPYTTQMVKTN-----EGQILVSGKgLLPGNTFLAATDsalNDPQKRAALQDYLQRLAG 235
                     86.5******888765.67******************9874.....7788888874568888888877787778888889998887765 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   3.1e-05      0.11     122     193 ..      45     115 ..      15     118 .. 0.70
   2 !   32.1   0.0   2.1e-11   7.5e-08      86     209 ..     108     233 ..     105     241 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.1e-05
                 HHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 122 eellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrk 193
                 ++ + ++l+++++  ef+  + + +aL++g vda +  ++ l  ++++ +  k+++   ++++++ a+ v +
  CTQ28543.1  45 AANALQNLPYDIKWAEFPAAAPLAEALNAGAVDAGIIGDAPLLFALANGAPVKAIA-VDKSNPAGTAVLVSP 115
                 222444566799**********************8777777777777766666666.566666666666665 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 2.1e-11
                 EEEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC....TSEEE.EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  86 gqvllvrkkdaskissiksladLkgkkvgvqagstaeellkeelkk....gaeiv.efdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlve 179
                 g+++lv  +     s++ks adLkgk++++ +gs  +  + ++l++      e++ +f    +a  aL ng+vda+++ +p   ++vk+n+++ +v  +
  CTQ28543.1 108 GTAVLVSPG-----STLKSGADLKGKRIATGKGSIGHFVALKALEQagisPKEVQwVFLGPVDAKVALLNGSVDAWATWEPYTTQMVKTNEGQILVS-G 200
                 677777755.....4799999**************9966555555466654445556999***********************************99.5 PP

                 CGGCECEEEEEEET...TTHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx RF
   SBP_bac_3 180 eplsseeyaiavrk...gdseLrkainkalael 209
                 + l + +   a+     +d++ r+a+++ l++l
  CTQ28543.1 201 KGLLPGNTFLAATDsalNDPQKRAALQDYLQRL 233
                 555555554444332335666667776666666 PP

>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.8e-08   6.4e-05      93     167 ..     109     181 ..      88     197 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.8e-08
      NMT1_3  93 fqlvvskdsgigsiadlkgkrvsvGpegsGtegsarailealglsekdlklleelgygesadalkdgqldgaalv 167
                  +++vs  s+++s adlkgkr++ G+ + G +  a++ le +g+s k+++   +lg+ ++  al +g +d+ a+ 
  CTQ28543.1 109 TAVLVSPGSTLKSGADLKGKRIATGKGSIG-HFVALKALEQAGISPKEVQW-VFLGPVDAKVALLNGSVDAWATW 181
                 56788999******************5555.5589999************6.8******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2320.83
//
Query:       CTQ28544.1  [L=383]
Description: putative acyl-CoA dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-11   43.4   1.4    8.5e-11   42.3   0.1    2.2  2  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    8.9e-10   38.7   0.0    1.6e-09   37.9   0.0    1.4  1  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
      1e-09   38.8   0.3    2.9e-09   37.3   0.3    1.8  1  Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
    7.4e-06   26.6   0.1    1.5e-05   25.6   0.1    1.5  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.96   4.3e+03      40      56 ..      16      32 ..       9      43 .. 0.60
   2 !   42.3   0.1   1.9e-14   8.5e-11      10     130 ..     256     364 ..     248     367 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.96
                   HHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2 40 tqlalaeaaarldAAra 56
                   + ++ ae aa+ldA  +
     CTQ28544.1 16 LRQQMAEQAASLDASGE 32
                   44566666666666555 PP

  == domain 2  score: 42.3 bits;  conditional E-value: 1.9e-14
                    HHHHHHHHHHHHHHHHHCTTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Acyl-CoA_dh_2  10 aAraalaefvelarervrassgekladdpatqlalaeaaarldAAralleraaaraealaaagkevtvedraearraaalavelaiaavdalfeaa 105
                    +A+aa + +v + ++rv a+ g +l+  p +q +++++a  l   r lle+aaa       + +++      ea +a+++ +++ai+av+ + e++
     CTQ28544.1 256 IAHAAHDWLVRWLAGRVPAGLGHPLSRLPRVQEKVGQIAGLLLVNRSLLEQAAAL------RFSAI------EANLAKVTITDNAIQAVNIALELT 339
                    89***************************************************99......44444......799********************* PP

                    GGGGGBTT-HHHHHHHHHHHHCTSG CS
  Acyl-CoA_dh_2 106 GgsalrkesplqRlwRDahaaaaHa 130
                    G ++l  ++pl+R++R++  +++H+
     CTQ28544.1 340 GNHGLSRQNPLERHYRNVLCGRVHT 364
                    ***********************96 PP

>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   3.5e-13   1.6e-09       6      97 .]     124     214 ..     123     214 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 3.5e-13
                    -SS-SS-GGG---EE.EEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE.. CS
  Acyl-CoA_dh_M   6 EpqaGsdvasvktta.aerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfedv 97 
                    Ep+ Gs +++    + a+r  +++ ++G+Ki+ t+ +   ++ v+ar  ++d+   + ++lvp d+pg+sv + ++  G+r + ++e+ f++v
     CTQ28544.1 124 EPELGSPARGGLPDTvATRRAEGWDISGHKIYTTGIEGLRWLAVWAR--SDDNPPLVGTWLVPGDSPGISVVKSWDHAGMRATGSHEVIFNHV 214
                    77778887776655557777779************************..4444788999************999999*************987 PP

>> Acyl-CoA_dh_1  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.3   6.4e-13   2.9e-09      18     132 ..     249     361 ..     239     364 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 6.4e-13
                    --..-SHHHHHHHHHHHHHHHTS..B-CC-BGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHG CS
  Acyl-CoA_dh_1  18 vaaaalglarraleealeyarrr..kafgkplidhqlvreklaemaaeleaarllvyraaealdagkpdraeasmaKlfaselaqevadlamqllG 111
                    +aa    +a++a + +++++  r  +  g pl   + v+ek++++a  l + r+l+++aa++      +  ea++aK+  ++ a ++++ a++l G
     CTQ28544.1 249 LAAIYDSIAHAAHDWLVRWLAGRvpAGLGHPLSRLPRVQEKVGQIAGLLLVNRSLLEQAAALR----FSAIEANLAKVTITDNAIQAVNIALELTG 340
                    556666788999999999999994444559*****************************9743....335678*********************** PP

                    GGTTSGGGHHHHHHHHTHHHH CS
  Acyl-CoA_dh_1 112 gaGyleeypverlyrdarvlr 132
                     +G+++++p+er+yr++++ r
     CTQ28544.1 341 NHGLSRQNPLERHYRNVLCGR 361
                    ****************99876 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   3.4e-09   1.5e-05      15      82 ..      16      83 ..       4      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.4e-09
                   HHHHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHH CS
  Acyl-CoA_dh_N 15 aeeelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalll 82
                   +++++a++aa  d++gefp+  ++ l + G+l ++vp   gGag++  +   v+  +a +  ++al++
     CTQ28544.1 16 LRQQMAEQAASLDASGEFPWRNIDHLRAGGWLSLAVPPSCGGAGASLAQLQQVIAAIAWGEPATALIV 83
                   56788999***********999**********************999999999999999888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2682.86
//
Query:       CTQ28545.1  [L=361]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-73  246.7   7.4    4.9e-73  246.3   7.4    1.1  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.3   7.4   2.8e-77   4.9e-73       9     313 ..      11     323 ..       3     324 .. 0.94

  Alignments for each domain:
  == domain 1  score: 246.3 bits;  conditional E-value: 2.8e-77
  Bac_luciferase   9 trqggalgaas...aslrylvelaraaEelGfdavwvaehhggpggaldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhlsgGR 100
                     +r ++++ a+    ++ +y+v++a++ E++Gfd+++v+         +d f + a +   T++i+ + a++p++  +P+++A+ +atL+hl +GR
      CTQ28545.1  11 HRLSSETIAPVgpiFDRDYIVRFAQTHEAAGFDRLLVGHWSDQ----PDGFLVTALAGLSTQKIQYLLAHRPGF-VSPTLAARKFATLEHLLEGR 100
                     44444444444667899********************977776....***************************.******************** PP

  Bac_luciferase 101 fglglgtggpaveerrfGv..dhderyarlrEfvevlrrlwrgeev.dfeGeffsvkgalllprpgqgp.iPvyvaaaspaglelaarhadglll 191
                     + +++++gg+ +e+rr+G+  dhd+ryar++ f++++r++w++e + d + +f+++++a++  rp q+p +P+y++++s+a++++a++had++ l
      CTQ28545.1 101 LAVHIISGGNDAEQRRDGDylDHDQRYARTDAFLDIVRQVWTSEQPvDIHNDFYQAEQAWSAIRPLQKPhLPIYFGGSSEAAIAVAGKHADVFAL 195
                     *****************************************998888********************999************************* PP

  Bac_luciferase 192 ageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraearaliagld...........fyaldsegagreaeaaeiqeeedanl 275
                     +ge++++  e+i+r+ra aa++ r   di + +s+ +i+ad+e+eA+++a+++++               ++ +s ga+r+ ++a++++  d++l
      CTQ28545.1 196 WGESLAQTGETIQRVRAEAAKHQR---DIGFSVSFRPIIADSEAEAWEKAEHILHV-AteqaaqrgggfKAKPESIGAQRLRATAAQGRVVDKRL 286
                     ************************...9**********************877744.4599999999*99999********************** PP

  Bac_luciferase 276 wagaadavpdelvaatalvGtpeqvaerlaayaeagvd 313
                     w g a++v   + ++talvGtpeqva++l +y+++gv+
      CTQ28545.1 287 WTGIAQLV-GGGHNSTALVGTPEQVADALLDYYDLGVR 323
                     *******9.9**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2682.23
//
Query:       CTQ28546.1  [L=297]
Description: putative LysR family regulatory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-31  108.9   4.2    3.2e-31  108.3   4.2    1.2  1  LysR_substrate  LysR substrate binding domain
    1.3e-17   63.5   1.3    3.9e-17   61.9   1.3    1.9  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0018   18.1   0.9     0.0066   16.3   0.1    2.3  2  MarR_2          MarR family
     0.0045   16.8   0.7      0.013   15.3   0.7    1.8  1  HTH_30          PucR C-terminal helix-turn-helix domain
     0.0045   16.6   0.0      0.011   15.3   0.0    1.7  1  HTH_50          Helix-turn-helix domain
     0.0073   16.1   0.2      0.023   14.5   0.2    1.9  1  HTH_8           Bacterial regulatory protein, Fis family
  ------ inclusion threshold ------
      0.017   14.7   0.1      0.051   13.1   0.1    1.8  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.055   13.4   0.0       0.14   12.1   0.0    1.6  1  MarR            MarR family
      0.093   12.9   0.0       0.25   11.5   0.0    1.7  1  HTH_28          Helix-turn-helix domain
       0.11   12.7   0.0       0.18   12.1   0.0    1.3  1  NUMOD1          NUMOD1 domain
       0.16   12.0   0.5       0.24   11.5   0.5    1.3  1  Replic_Relax    Replication-relaxation
       0.18   11.6   0.1       0.18   11.6   0.1    2.3  3  HTH_AsnC-type   AsnC-type helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   4.2   2.1e-34   3.2e-31       2     188 ..      86     272 ..      85     281 .. 0.96

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 2.1e-34
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS...CCTTEEEEEEEEEEEEEEEETTSGGGGS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp...edsglearpLaeeplvlvaspdhpLarg 93 
                     g++rg Lr+g+p++l++  lp +l+++ +++P+++ ++++g+s +l ++l++gelD  +++gp      +g+  r L+  ++v+++ +   L + 
      CTQ28546.1  86 GEPRGALRLGVPQSLSEIALPAALSALSQQFPGLSPQITCGWSGQLQRRLENGELDGMLAMGPAqqsFAEGYSGRLLCPLEVVPIVGRRLNLRAS 180
                     799*************************************************************999999*******************755554 PP

                     SSECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEE CS
  LysR_substrate  94 epvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyr 188
                        sl+++a+  +il ++g+glr  l + l+++gl+++  +e+  ++  +alva+GlG++l+pr a++ ++ ++++ +l l+++++   l+l++ 
      CTQ28546.1 181 ---SLRECAERGWILNPDGCGLRAGLIRELQSQGLRLTLNVESAGAQLQIALVAQGLGLGLVPRAALASSPWRDEVAVLSLSDFQPAVSLWLIHA 272
                     ...89***************************************************************************************985 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   1.3   2.6e-20   3.9e-17       2      59 ..       4      61 ..       3      62 .. 0.96

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 2.6e-20
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                +++ +++a ++  s+++AAe Lg++q+a++r+++rLE+el+v+L+eR++r l+LT+aG
  CTQ28546.1  4 DDIDALLATVQFSSLNQAAEYLGITQSAITRRLQRLEQELNVTLLERQTRPLTLTAAG 61
                68899****************************************************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   4.4e-06    0.0066      23      47 ..      17      41 ..       6      42 .. 0.89
   2 ?   -2.1   0.0       2.5   3.7e+03      41      50 ..     203     212 ..     200     212 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.4e-06
                EHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsrilkrLva 47
                + ++ a++lg+++sa++r+l+rL++
  CTQ28546.1 17 SLNQAAEYLGITQSAITRRLQRLEQ 41
                56789******************96 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.5
                 HHHHHHHTTS CS
      MarR_2  41 ilkrLvaaGL 50 
                 ++++L+++GL
  CTQ28546.1 203 LIRELQSQGL 212
                 5677777776 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.7   8.4e-06     0.013      13      50 ..      16      53 ..       7      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 8.4e-06
                T-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHH CS
      HTH_30 13 gnisatAkaLhvHrnTlryRLrrieellgldlddpddr 50
                 +++++A+ L++    ++ RL+r+e+ l++ l + ++r
  CTQ28546.1 16 SSLNQAAEYLGITQSAITRRLQRLEQELNVTLLERQTR 53
                799****************************9988877 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.5e-06     0.011      22      46 ..      14      38 ..       6      40 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.5e-06
      HTH_50 22 kYpStRklAkrLGvShtaianklrk 46
                ++ S   +A+ LG++++ai ++l++
  CTQ28546.1 14 QFSSLNQAAEYLGITQSAITRRLQR 38
                6889999****************97 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.2   1.5e-05     0.023      22      42 .]      19      39 ..      17      39 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
                HHHHHHHTS-HHHHHHHHHHT CS
       HTH_8 22 skAArlLGisRrtLyrKLkkY 42
                 +AA++LGi+ + ++r+L+++
  CTQ28546.1 19 NQAAEYLGITQSAITRRLQRL 39
                69*****************95 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.4e-05     0.051      21      44 ..      19      42 ..      16      42 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.4e-05
      HTH_24 21 reLAerlglSpstvnrrlkrLeee 44
                ++ Ae lg+++s+++rrl+rLe+e
  CTQ28546.1 19 NQAAEYLGITQSAITRRLQRLEQE 42
                5668889***************86 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.6e-05      0.14      24      44 ..      22      42 ..      16      46 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.6e-05
                HHHHTS-HHHHHHHHHHHHHT CS
        MarR 24 akklgvskstvtrvldrLekk 44
                a+ lg+++s++tr l rLe++
  CTQ28546.1 22 AEYLGITQSAITRRLQRLEQE 42
                899****************95 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00016      0.25      14      39 ..      17      42 ..       6      54 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
      HTH_28 14 svreaArelgisrrtvyrWikryeeg 39
                s ++aA+ lgi+++ + r ++r+e++
  CTQ28546.1 17 SLNQAAEYLGITQSAITRRLQRLEQE 42
                8899********************94 PP

>> NUMOD1  NUMOD1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012      0.18      15      34 ..      14      33 ..       5      36 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
      NUMOD1 15 kFsSireAakyLgishntIn 34
                 FsS+++Aa+yLgi  + I+
  CTQ28546.1 14 QFSSLNQAAEYLGITQSAIT 33
                6*************988877 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   0.00016      0.24       3      69 ..       9      65 ..       8      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
  Replic_Relax  3 lLaehrvlTtrqiarllfashratarrrLarLrelgllsrlrkrvggarggsepyvYaLtpkGarll 69
                  lLa +++++ +q a++l  +++a + rrL+rL+++  ++ l+++  ++         +Lt +G+r+ 
    CTQ28546.1  9 LLATVQFSSLNQAAEYLGITQSA-ITRRLQRLEQELNVTLLERQ--TRP-------LTLTAAGHRVY 65
                  7999*******************.********999989888887..333.......47888888887 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00012      0.18      22      42 .]      20      40 ..      16      40 .. 0.88
   2 ?   -2.9   0.1       4.4   6.5e+03      24      34 ..     172     182 ..     171     184 .. 0.74
   3 ?   -3.9   0.1       9.1   1.4e+04       8      15 ..     203     210 ..     203     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
  HTH_AsnC-type 22 eLAervGlSestvlrRvrrLe 42
                   + Ae +G+++s++ rR++rLe
     CTQ28546.1 20 QAAEYLGITQSAITRRLQRLE 40
                   56899***************8 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.4
  HTH_AsnC-type  24 AervGlSestv 34 
                    ++r++l +s  
     CTQ28546.1 172 GRRLNLRASSL 182
                    89999988765 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 9.1
  HTH_AsnC-type   8 ILeaLqed 15 
                    ++++Lq +
     CTQ28546.1 203 LIRELQSQ 210
                    79999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2182.05
//
Query:       CTQ28547.1  [L=200]
Description: Putataive cysteine dioxygenase type I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-09   36.7   0.1    3.2e-09   36.3   0.1    1.2  1  CDO_I         Cysteine dioxygenase type I
  ------ inclusion threshold ------
      0.066   13.0   0.0        4.3    7.1   0.0    2.1  2  Peptidase_S3  Alphavirus core protein


Domain annotation for each model (and alignments):
>> CDO_I  Cysteine dioxygenase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.1   3.6e-13   3.2e-09       4     157 ..       4     159 ..       1     167 [. 0.70

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 3.6e-13
                 XX----SSHHHHHHHHHHHTTSS---HHHHHHHHHHS---HHHHG..GG----SSS-EEEEE.-GGGT.-EEEEEEE-TT-B--EE--TT-EEEEEEEE CS
       CDO_I   4 pvvakaetlaqlqalllellrekavdveevaslveayksdaveWa..klakfdpekytrnlv.agngk.sellllcWgpGtassvHDHtdsvgalklla 98 
                 p  +k +++++ +  l+   +++a   + va+ ++a+     +W   +++   p++y + l+ a +g+ + ++   WgpG+a+ +HDH    ga+ +l+
  CTQ28547.1   4 PRLEKLRHFIHEVDRLHREHHQAAPLLDAVAQRLAAL-VRYDDWLpeEYTLPHPHHYQQYLLhADSGErFSIVSFVWGPGQATPIHDHR-VWGAIGMLR 100
                 5666667777777777776666666666665544333.24457766689999999999999954444324555567************6.789****** PP

                 S-EEEEEE----SS-----EEEEEE--TT-EEEE-.TTT-EEEEEES-SSS-EEEEEEEE CS
       CDO_I  99 GeLkEtkfAwalkrleesdivdekrllsngtayvn.delglHrveNlSsdegAVSlHlYa 157
                 G     ++    +      +     l   ++ +v  d+  +Hrv N+  d+  +S+H+Y 
  CTQ28547.1 101 GAEENQRYQLDADGIPRALGAATL-LEAGQVEKVSaDDGDIHRVSNALADRVSISIHVYG 159
                 **9999998888766555444433.445555566516667*******************5 PP

>> Peptidase_S3  Alphavirus core protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00047       4.3      73     136 ..      50     110 ..      31     114 .. 0.79
   2 ?    3.9   0.0    0.0046        41       4      38 ..     125     159 ..     122     171 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00047
                   -B-S---SEEEEETTEEEEEETTEEEEETTS--TT-TT-EEE-TTS-EEEEEEEEEEETTEEEE CS
  Peptidase_S3  73 kytsekpegfynwhhgavqysggrftiprgvgkrgdsgrpildnkgrvvaivlggadegsrtal 136
                   +yt  +p  + ++       sg rf+i   v ++g++  pi d +      +l ga+e  r  l
    CTQ28547.1  50 EYTLPHPHHYQQYLLH--ADSGERFSIVSFVWGPGQA-TPIHDHRVWGAIGMLRGAEENQRYQL 110
                   4666666655544433..359**************86.6****9988888899*****999766 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0046
                   XSXSSEEEEEETTTEEEEEEEEETTEEEEETTS-S CS
  Peptidase_S3   4 leadrlfevknedgdvigyallvedkvmkplhvkg 38 
                   lea ++ +v  +dgd+   + ++ d+v   +hv g
    CTQ28547.1 125 LEAGQVEKVSADDGDIHRVSNALADRVSISIHVYG 159
                   78999999*************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1555.63
//
Query:       CTQ28548.1  [L=526]
Description: Sulfurtransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-36  124.6   0.0    1.6e-09   38.2   0.0    4.3  4  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   4.2e-10   7.5e-06       7     106 ..      15     101 ..      10     102 .. 0.83
   2 !   38.2   0.0   8.9e-14   1.6e-09       1     106 [.     131     225 ..     131     226 .. 0.81
   3 !   26.6   0.0   3.7e-10   6.6e-06       7      93 ..     275     346 ..     267     357 .. 0.79
   4 !   28.0   0.0   1.3e-10   2.4e-06       1     106 [.     377     467 ..     377     468 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 4.2e-10
   Rhodanese   7 ellekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidn.kktvvvycdgggraaaaaallkklGyknvsvldGGfkaw 104
                 +ll++++ al+DvR+++++++ h   Avn+             pl +l  e++++ i +  +++ vy++g g a+ a   l++ Gy++v +l  G+ +w
  CTQ28548.1  15 ALLDRRELALIDVREEADFATAHPLFAVNL-------------PLSKLELEVRRR-IPRfTTPLTVYDNGEGLAEIAVERLRSWGYQDVALLAEGLAGW 99 
                 456889989*********************.............777777777776.556266677777666669999999999**999*********** PP

   Rhodanese 105 ke 106
                  +
  CTQ28548.1 100 RR 101
                 75 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 8.9e-14
   Rhodanese   1 sakelkell.ekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGykn.vsvl 97 
                 sa+e+++l+ ++++v+++D+R ++eY++ +Ipg+++v          + ++l+  +e+l +   +++++v+v c+g+ r+   ++ l  +G++n  + l
  CTQ28548.1 131 SAQEVQALIdSRQEVVIVDARRFDEYQTMSIPGSISV----------PGGELALRVESLTP---SPQTPVIVNCAGRTRSIIGTQSLINAGVPNpAHAL 216
                 689999***5666666*********************..........44444444444444...7**************8888777777********** PP

   Rhodanese  98 dGGfkawke 106
                 ++G  +w  
  CTQ28548.1 217 RNGTIGWTL 225
                 ***999975 PP

  == domain 3  score: 26.6 bits;  conditional E-value: 3.7e-10
   Rhodanese   7 ellekgkva.llDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaa.aallkklGykn 93 
                 +     ++  l+DvR+peeY++gh pg+++           + ++l +  + +++    ++ ++v+++d+g raa +  +l++ +G+++
  CTQ28548.1 275 QSD---RTTfLFDVRSPEEYAAGHYPGSLSA----------PGGQLVQETDHFASV---RGARIVLLDDDGIRAAITgSWLAQ-MGWET 346
                 322...2235*********************..........999999999999998...9*************7777455555.88654 PP

  == domain 4  score: 28.0 bits;  conditional E-value: 1.3e-10
   Rhodanese   1 sakelkellekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaa.aallkklGyknvsvld 98 
                 s+++l++ le++++++lD  +++ + + hIpgA  +                +l ++l++    + ++ vv c ++  a+ a    +   G k v++l 
  CTQ28548.1 377 SPAQLAQQLEEPDTVVLDFTTSANFVARHIPGAWWL-------------TRSQLRQALEAI--PPAQRYVVTCGSSLLARYAvPEVAALTG-KPVQLLT 459
                 6899*********99*********************.............444455555554..679*******999996666444444479.88***** PP

   Rhodanese  99 GGfkawke 106
                 GG  aw +
  CTQ28548.1 460 GGTLAWIA 467
                 ******76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3944.70
//
Query:       CTQ28549.1  [L=241]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.1e-41  140.0   0.0    1.1e-40  139.6   0.0    1.0  1  Cu-oxidase_4  Multi-copper polyphenol oxidoreductase laccase


Domain annotation for each model (and alignments):
>> Cu-oxidase_4  Multi-copper polyphenol oxidoreductase laccase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.6   0.0   6.4e-45   1.1e-40      42     221 ..      31     224 ..      12     236 .. 0.87

  Alignments for each domain:
  == domain 1  score: 139.6 bits;  conditional E-value: 6.4e-45
                   GEEE-B--SS--EEE-EE--GGCSSSS..B..-SEEEESSTTSEEEEEESSSEEEEEEETTSSEEEEEEE-HHHHHHTHHHHHHHHHCSTT--GGGE CS
  Cu-oxidase_4  42 rlvlleqvHgtevvvvaeeaaakgsaeeeeleaDalvtdepgvalavltADCvPvlladpkgkvvaaaHaGwrGlvagvlektveamkelgakpedi 138
                   +l+ ++ vHg+ev++ ++   +   +++   + Da++t  +g+ ++v+tADC+P+l+a+++g+ v  +HaGw+Glv+g++ + ++ +++ g++ +d+
    CTQ28549.1  31 ELAPVKLVHGNEVHHYQQ---P-LPTRP---HPDAVFTAVAGQKVGVVTADCLPLLIASRDGRYVCSVHAGWQGLVSGIVDNSLACFRQQGVALADL 120
                   4677899******66554...2.12222...26**************************************************************** PP

                   EEEE-SB--TTT-EEEHHHHHHHHHHSGGGG.....................EEEEETTEEEE-HHHHHHHHHHHTT-..SEEEE---BTTT-TTT- CS
  Cu-oxidase_4 139 laaiGPsIgpecyeVgeevaeafeaadpeaa.....................aaaeeegkaylDLaalarlqLeeaGvkeenieasglCTvceedrf 214
                   ++a+GP I+p+cyeV++ ++++++++    +                     aaa+++++ ++DL+a+a+++++eaGv+++++e+ g CT+c ++ +
    CTQ28549.1 121 VIAVGPYIHPCCYEVSAGFYQQLLDQPGGDRvarhrqrlfhsrsgpvsdplkAAARGSDNLWFDLRAFAEAIFAEAGVAPASVEWLGSCTYCTPQSL 217
                   ***********************865555546667777888889999999887777777889*********************************** PP

                   --HHHHS CS
  Cu-oxidase_4 215 FSyRrdg 221
                    SyRr +
    CTQ28549.1 218 GSYRRRT 224
                   *****84 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1918.67
//
Query:       CTQ28550.1  [L=398]
Description: hydroxy-aromatic acid transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-37  126.9  76.8    1.2e-34  119.8  49.2    2.0  2  MFS_1      Major Facilitator Superfamily
    2.9e-16   59.4  14.2    2.9e-16   59.4  14.2    3.0  3  Sugar_tr   Sugar (and other) transporter
    1.3e-10   41.2  45.9    1.7e-10   40.7  45.9    1.1  1  MFS_4      Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
       0.39   10.8   6.7        7.3    6.7   1.4    2.7  2  P5-ATPase  P5-type ATPase cation transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8  49.2   2.6e-38   1.2e-34       2     293 ..      20     297 ..      19     303 .. 0.87
   2 !   13.7  25.7   4.8e-06     0.021      69     174 ..     287     391 ..     281     396 .. 0.77

  Alignments for each domain:
  == domain 1  score: 119.8 bits;  conditional E-value: 2.6e-38
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +++a++ +l+  ++g+a+   +a+++ +++ ++g+++++  lg + ++l++G l+dr+Gr+r+ll ++llf+l++l+ ++a s+++ll++r+l+G+g g
  CTQ28550.1  20 FMVALMEGLDLQAAGIAAV-GMAQAFALDKMQMGWIFSAGILGLLPGALVGGMLADRHGRKRILLGSVLLFGLFSLATALAWSFPTLLLARLLTGVGLG 117
                 7889999999999999999.******************************************************77777779999************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpa 199
                 a++p+ +al+++ +  + rgra++l++ g+ +Ga+l+++lg   + ++ W+ +f+i ++v ll++ l + +lpe++   + ++++++     ++ ++p 
  CTQ28550.1 118 AALPNLIALTSEAAGSRFRGRAVSLMYCGVPIGAALAAALGFSGL-AAAWQIIFWIGGVVPLLLIPLLMRWLPESQAFQRAEASVPL-----RTLFAP- 209
                 **********************************99987754333.568***************99978888888888887777777.....444444. PP

       MFS_1 200 wkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglal 293
                  +a  +     +l+++ +++ +++++l  +lp+ l    g+  + +a++++  l++++a++ ll+g+l+d+l + r+ ll+++++l+++l+l  
  CTQ28550.1 210 GQAAATL----LLWLGYFFTLLVVYMLINWLPM-LLVGQGFR-ASQAAGVMFSLQIGAACGTLLLGALMDKLTPLRMSLLIYSGILASLLALGS 297
                 3333333....48888888889***********.5*******.8***************************88888877777777777777654 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 4.8e-06
       MFS_1  69 lllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafv 166
                  +l +l  +l++ assl+ +l++ +++Gl+a ++ ++ +al+   +p   r+ ++g + a   lGa+ gpll+g ++    g  +v+ + a+  +la+v
  CTQ28550.1 287 GILASLL-ALGS-ASSLTGMLLAGFVAGLFATGGQSVLYALAPLFYPAAIRATGVGTAVAVGRLGAMSGPLLAGKMLaLGTGTVGVMAASAPGIVLAGV 383
                 2333333.3333.266669*******************************************************8883555577778888888888888 PP

       MFS_1 167 lfllllpe 174
                  +++l+ +
  CTQ28550.1 384 AVFWLMHR 391
                 65565544 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4  14.2   6.4e-20   2.9e-16      44     199 ..      47     196 ..      13     201 .. 0.90
   2 !    4.0   4.5     0.004        18      48     122 ..     250     322 ..     241     325 .. 0.76
   3 ?    1.8   5.8     0.019        85     342     414 ..     294     365 ..     280     390 .. 0.72

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 6.4e-20
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                  ++++g+i+s+ ++G + G+l++g+l+dr GRk +ll +++lf   ++ +a+a    s+  l+++R+l+G+g+G+a      ++sE A  + Rg+ vsl
  CTQ28550.1  47 DKMQMGWIFSAGILGLLPGALVGGMLADRHGRKRILLGSVLLFGLFSLATALAW---SFPTLLLARLLTGVGLGAALPNLIALTSEAAGSRFRGRAVSL 142
                 689************************************************999...****************************************** PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHH.HHGGGS---HHHHH CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpallll.illlflPESPrylv 199
                    ++ +G  +aa +g+  +   +   w+i +++  v +lll+ +l+ +lPES  +  
  CTQ28550.1 143 MYCGVPIGAALAAALGF--SGLAA--AWQIIFWIGGVVPLLLIpLLMRWLPESQAFQR 196
                 ********999998764..44444..7**********9999983556799***99975 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.004
                 HHHHHHTHHHHHHHHHHHHHHHHHHTT.HHHHHHH.HHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfG.Rkkslli.aavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvl 122
                    ++ ++++Ga++G l++g l+d++   + slli +++l++  a+ +a +     + +l++g v   ++ G++svl
  CTQ28550.1 250 AAGVMFSLQIGAACGTLLLGALMDKLTpLRMSLLIySGILASLLALGSASSL----TGMLLAGFVAGLFATGGQSVL 322
                 55667789*****************975677777758888888888877777....888888855555667777776 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.019
                 TTSS...CHHHHHHHHHHHH.HHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH CS
    Sugar_tr 342 vakskaasivaivfialfia.lfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig 414
                   +  +as +  +++a f+a lfa+g  +v++ l++ ++p ++R+++   avav  l  +   ll   ++   +
  CTQ28550.1 294 ALG--SASSLTGMLLAGFVAgLFATGGQSVLYALAPLFYPAAIRATGVGTAVAVGRLGAMSGPLLAGKMLALGT 365
                 444..45666667777776648********************************99988877777666655544 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7  45.9   3.8e-14   1.7e-10      19     361 ..      40     384 ..      38     386 .. 0.76

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 3.8e-14
       MFS_4  19 llaegqlslsqagllaaaNylGYLvGalla.afalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarre 116
                 + ++  l+  q+g++ +a  lG L Gal+  + a ++g++R+ ll+++l+  l  la al+ sf ++ll+R+l+Gv+ +++l    +l  + a    r+
  CTQ28550.1  40 MAQAFALDKMQMGWIFSAGILGLLPGALVGgMLADRHGRKRI-LLGSVLLFGLFSLATALAWSFPTLLLARLLTGVGLGAALPNLIALTSEAAGSRFRG 137
                 7778889999******************97245778888888.99********************************9999988888888888899*** PP

       MFS_4 117 rvgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllp.raalreasaaaea..akaeqkslpllalllaYglaGfGYiitat 212
                 r  +l+++Gv +G a+++ l   +l+++++     ++ +v+ ++l+ l++ +lp  +a++ a+a+ +     a+ + +++l l l Y++  +   +   
  CTQ28550.1 138 RAVSLMYCGVPIGAALAAALGFSGLAAAWQII--FWIGGVVPLLLIPLLMRWLPeSQAFQRAEASVPLrtLFAPGQAAATLLLWLGYFFTLLVVYMLIN 234
                 ****************9998888888777655..66789999999999999999755556555555550056788999999999999998876666677 PP

       MFS_4 213 Flva.iardgaggalleallWllvGlaaivgvlvwlrv.akrsglrralaaallieavgvllsllspsplglivssvllGltflaitalvlqlarelap 309
                 +l+  ++ +g++++ ++  + +l  ++a+ g+l+   + +k + lr  l +   i a  ++l     s++g+++++ + Gl+ ++  ++  +la  ++p
  CTQ28550.1 235 WLPMlLVGQGFRASQAAGVMFSLQ-IGAACGTLLLGALmDKLTPLRMSLLIYSGILASLLALGS-ASSLTGMLLAGFVAGLFATGGQSVLYALAPLFYP 331
                 887615677766666655555554.667777766555504555555555555555444333333.3677888899999998888877766666666666 PP

       MFS_4 310 patrrl..lglmTasfgigQilGpllasllaeatgslalallvaaaalvlaali 361
                  a  r+  +g + a+  +g + Gplla+ + +   +   +++++a  +vla+++
  CTQ28550.1 332 AAI-RAtgVGTAVAVGRLGAMSGPLLAGKMLALGTGTVGVMAASAPGIVLAGVA 384
                 655.5501455555667999********9999988889999999999***9987 PP

>> P5-ATPase  P5-type ATPase cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.3    0.0024        11      17      42 ..     167     192 ..     158     202 .. 0.85
   2 ?    6.7   1.4    0.0016       7.3      17      43 ..     215     241 ..     210     268 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0024
   P5-ATPase  17 lalyilgciltlGlllLlfrWlPewr 42 
                 ++++++g ++ l l+ Ll+rWlPe +
  CTQ28550.1 167 QIIFWIGGVVPLLLIPLLMRWLPESQ 192
                 6788899999999**********965 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0016
   P5-ATPase  17 lalyilgciltlGlllLlfrWlPewrv 43 
                 ++l +lg+++tl ++++l+ WlP + v
  CTQ28550.1 215 TLLLWLGYFFTLLVVYMLINWLPMLLV 241
                 6899*******************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 2957.61
//
Query:       CTQ28551.1  [L=338]
Description: 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-74  250.1   5.2    3.3e-74  249.8   5.2    1.1  1  HMGL-like       HMGL-like
    4.4e-31  106.2   0.3    1.1e-30  104.9   0.3    1.7  1  DmpG_comm       DmpG-like communication domain
  ------ inclusion threshold ------
      0.083   13.1   0.0       0.21   11.7   0.0    1.7  2  SOUL            SOUL heme-binding protein
        1.5    8.9   4.7         14    5.8   0.1    4.0  6  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.8   5.2   7.4e-78   3.3e-74       2     262 ..       6     262 ..       5     264 .. 0.98

  Alignments for each domain:
  == domain 1  score: 249.8 bits;  conditional E-value: 7.4e-78
                 -EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--.............TSGGGT.THHHHHHHS---TT-B.....--EE-SSHHHHHHHHH. CS
   HMGL-like   2 vkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEv.............gfpaaseddfevvraiakavkkar...ilalvrarekdikaavea 84 
                 ++i+d+tLRDG +a+++++s++++++ia aLd+agvd+iEv             gf+a+s  d+++++a+a++v +a+   +l++ + + +d+kaa++ 
  CTQ28551.1   6 LYISDVTLRDGMHAIRHQYSLAQVQQIASALDKAGVDSIEVahgdglqgssfnyGFGAHS--DIAWIEAAADVVSQAKiatLLLPGIGTLHDLKAAYQ- 101
                 79**********************************************************..************99988889999*************. PP

                 ...TT-SEEEEEEES-HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-ETTT-BTTTBS--HHHHHHHHHHHHHHT-SEEEEEETTS---HHHHHHHHHH CS
   HMGL-like  85 lkgagakrvhvfiatselhlkaklkkdreevakkaeeavkaarslgkdvelsledasrtdleflaevveaaeeaGatriniaDtvGvltPneaaelisa 183
                    aga++v+v++++se              a+ a++++++ar+lg+d++ +l+++++++++ la+++ ++e++Gat+i++ D+ G +++n+++++++a
  CTQ28551.1 102 ---AGARVVRVATHCSE--------------ADVAAQHIAFARELGMDTVGFLMMSHMISPQALAQQALKMESYGATCIYVVDSGGTMNMNDIRDRFRA 183
                 ...**************..............******************************************************************** PP

                 HHHHS-.GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT-B----HHHHHHHHH CS
   HMGL-like 184 lkervkdkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealgvdtgldlqklrsiaa 262
                 lk+++k+++++ +H+H++l+l+van+++Ave+G+dr+d++++G+G++aGna+le+++aa+ +lg+++g+dl+ l+++a+
  CTQ28551.1 184 LKAVLKPETATGMHAHHNLSLGVANSIVAVEEGCDRIDASLAGMGAGAGNAPLEVFIAAADKLGWQHGTDLYALMNAAD 262
                 ***************************************************************************9986 PP

>> DmpG_comm  DmpG-like communication domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.3   2.5e-34   1.1e-30       1      61 [.     273     333 ..     273     335 .. 0.97

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 2.5e-34
   DmpG_comm   1 pridreslvlGyaGVYSsFllhaeraaerygvdardilvelGrrklvgGQEDliidvAleL 61 
                 +r+dre+l+lGyaGVYSsFl+h e+aa+ryg++a dilvelG+r++vgGQED+i+dvAl+L
  CTQ28551.1 273 VRVDRETLALGYAGVYSSFLRHSEAAAKRYGLSAVDILVELGKRRMVGGQEDMIVDVALDL 333
                 589********************************************************99 PP

>> SOUL  SOUL heme-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.7e-05      0.21      76     138 ..     133     192 ..      42     209 .. 0.79
   2 ?   -2.0   0.0       0.8   3.6e+03      88     164 ..     262     296 ..     251     304 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.7e-05
        SOUL  76 tmsfvlpskyqaeepPkPtddsrVkleevpertvavrrFsGfateeevkeeaeeLreaLekdg 138
                 t+ f++ s++  +  P+   ++++k+e+ ++++++v+  +G+++ ++++++ ++L++ L+ + 
  CTQ28551.1 133 TVGFLMMSHM-IS--PQALAQQALKMESYGATCIYVVDSGGTMNMNDIRDRFRALKAVLKPET 192
                 6778887775.45..7777888*******************99****************5333 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.8
        SOUL  88 eepPkPtddsrVkleevpertvavrrFsGfateeevkeeaeeLreaLekdggeekkdsyvlaqYnppftppflrrNE 164
                 +e+ +P +d+ V++++                                         +  + +Y   +   flr+ E
  CTQ28551.1 262 DELVRPLQDRPVRVDR-----------------------------------------ETLALGYAGVY-SSFLRHSE 296
                 3333444444444444.........................................34555555555.55555555 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.5   6.8e+03      41      51 ..      39      49 ..      37      77 .. 0.67
   2 ?    5.8   0.1    0.0032        14      33      54 ..      94     115 ..      91     123 .. 0.83
   3 ?    2.1   0.0     0.047   2.1e+02      35      48 ..     123     136 ..     116     151 .. 0.86
   4 ?   -2.9   0.0       1.6   7.3e+03       4      19 ..     189     204 ..     188     213 .. 0.66
   5 ?   -2.6   0.1       1.3   5.9e+03      35      44 ..     240     249 ..     240     250 .. 0.90
   6 ?   -0.8   0.0      0.37   1.6e+03      36      53 ..     297     316 ..     296     328 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.5
                    CT-EEEEESSS CS
  Hydrolase_like 41 aGwksvLVltG 51
                    aG++s+ V+ G
      CTQ28551.1 39 AGVDSIEVAHG 49
                    66677666665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0032
                     THHHHHHHCT-EEEEESSSSS- CS
  Hydrolase_like  33 tDiagAnnaGwksvLVltGvtr 54 
                     +D+++A +aG++ v V+t  ++
      CTQ28551.1  94 HDLKAAYQAGARVVRVATHCSE 115
                     8***************996655 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.047
                     HHHHHHCT-EEEEE CS
  Hydrolase_like  35 iagAnnaGwksvLV 48 
                     ia+A++ G+++v  
      CTQ28551.1 123 IAFARELGMDTVGF 136
                     99*********975 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 1.6
                     TTSSHHHHHHHHHH-- CS
  Hydrolase_like   4 KPepemydfalevlgs 19 
                     KPe  +   a++ l++
      CTQ28551.1 189 KPETATGMHAHHNLSL 204
                     6777777777776644 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 1.3
                     HHHHHHCT-E CS
  Hydrolase_like  35 iagAnnaGwk 44 
                     ia+A + Gw+
      CTQ28551.1 240 IAAADKLGWQ 249
                     899******7 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 0.37
                     HHHHHCT-EE..EEESSSSS CS
  Hydrolase_like  36 agAnnaGwks..vLVltGvt 53 
                     a+A+++G++   +LV  G+ 
      CTQ28551.1 297 AAAKRYGLSAvdILVELGKR 316
                     6899***9996677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2492.65
//
Query:       CTQ28552.1  [L=316]
Description: acetaldehyde-CoA dehydrogenase II, NAD-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-63  211.0   1.3    1.1e-62  210.3   1.3    1.3  1  AcetDehyd-dimer  Prokaryotic acetaldehyde dehydrogenase, dime
      6e-14   52.5   0.2    4.9e-13   49.6   0.0    2.3  3  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
     0.0004   20.9   0.2     0.0012   19.4   0.2    1.9  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
     0.0031   18.3   0.1     0.0074   17.1   0.1    1.6  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
  ------ inclusion threshold ------
      0.091   12.1   0.6       0.21   10.9   0.1    1.8  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
       0.11   12.5   0.2       0.31   11.1   0.2    1.7  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
        0.2   12.3   1.9        1.3    9.7   0.0    2.7  3  NAD_binding_3    Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> AcetDehyd-dimer  Prokaryotic acetaldehyde dehydrogenase, dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.3   1.3   4.3e-66   1.1e-62       1     138 []     131     284 ..     131     284 .. 0.99

  Alignments for each domain:
  == domain 1  score: 210.3 bits;  conditional E-value: 4.3e-66
  AcetDehyd-dimer   1 CgGQAtiPivaavsrvaeveyaeivasiasksaGpgtranideftetTakaieevggakkgkaiiilnpaepplimrdtvyalveeeadeeaie 94 
                      CgGQAtiP++aavsrva+v+yaeivasias+saGpgtranideftetT++aie+vgga kgkaii+lnpaeppl+mrdtvy+l e  a++eai+
       CTQ28552.1 131 CGGQATIPMIAAVSRVAKVHYAEIVASIASQSAGPGTRANIDEFTETTSQAIEKVGGAGKGKAIIVLNPAEPPLMMRDTVYVLSE-LASQEAIA 223
                      ************************************************************************************9.7799**** PP

  AcetDehyd-dimer  95 esveemveevqeyvPGYrlkqevqfd.................eekvsvllevegagdylP 138
                      +s++em+++vq+yvPGYrlkq+vqf+                 + k++v+levega++ylP
       CTQ28552.1 224 ASIAEMAAAVQAYVPGYRLKQQVQFEvipedrpvnlpgvgcfsGLKTAVYLEVEGAAHYLP 284
                      ************************************99999999****************9 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   1.9e-16   4.9e-13       1     116 [.       5     118 ..       5     123 .. 0.89
   2 ?   -2.0   0.0       1.8   4.7e+03      22      53 ..     149     179 ..     140     200 .. 0.66
   3 ?   -0.4   0.0      0.56   1.4e+03     102     118 ..     205     222 ..     175     225 .. 0.75

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1.9e-16
                     EEEEETTTSHHHHHH.HHHHHCTSSEEEEEEEESTT.TTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHH..HHTTS CS
  Semialdhyde_dh   1 kvaivGatGyvGqel.lrlLeehpevelvvllsssr.saGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapkl..aeagv 91 
                     kvai+G +G++G++l +++L++ +++e++v+++ +  s+G + a++ + ++++++ +   ++++e++++d+vf a++ag++ +  ++l  a+ g+
      CTQ28552.1   5 KVAIIG-SGNIGTDLmIKILRHGQHLEMAVMVGIDPqSDGLARARRLG-VATTHEGVGGLMQMAEFADIDFVFDATSAGAHIKNDAALreAKPGI 97 
                     7*****.*******9899*************9998889********99.66666666666888********************999996677899 PP

                     EEEESSSTTTTSTTSEBE-HHHHGG CS
  Semialdhyde_dh  92 kviDlssdfRlkddavyvlpevnre 116
                     +viDl+++       +y++p vn +
      CTQ28552.1  98 RVIDLTPAA----IGPYCVPVVNLA 118
                     *********....9********954 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.8
                     TSSEEEEEEEESTTTTTSBHHHHSGGGTTTEC CS
  Semialdhyde_dh  22 hpevelvvllsssrsaGkklaeavkaleegkd 53 
                       ++e+v+ ++s++ aG   +++  + +e++ 
      CTQ28552.1 149 VHYAEIVASIASQS-AGPGTRANIDEFTETTS 179
                     55677777777777.88777666664444444 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.56
                     TSTTSEBE-HHHH.GGGG CS
  Semialdhyde_dh 102 lkddavyvlpevn.reai 118
                     +  d vyvl+e+  +eai
      CTQ28552.1 205 MMRDTVYVLSELAsQEAI 222
                     445999*****9735554 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.2   4.6e-07    0.0012       1      52 [.       5      56 ..       5     103 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.6e-07
                   EEEEETTSHHHHHHHHHHHHTTS.-GGCEEEEEESSCCCHHHHHHHHC-EEEC CS
  F420_oxidored  1 kigiiGaGnmgealasgllaaga.qpheivvansrnpekaeelaeelgvkvta 52
                   k++iiG+Gn+g  l+ ++l++g+  +  ++v+ +++ + ++ + ++lgv +t+
     CTQ28552.1  5 KVAIIGSGNIGTDLMIKILRHGQhLEMAVMVGIDPQSDGLARA-RRLGVATTH 56
                   79*********************99999999999999988765.555655554 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   2.9e-06    0.0074       2      77 ..       5      85 ..       4     100 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.9e-06
                  EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH.HHHTTHEEESS....HHHHHTCTTESEEEE-S-GGGHHH CS
  GFO_IDH_MocA  2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeav.aesfgveaysd....leelladpeidavivatpngthee 77
                  +vaiiG+G+ig++ + ++ ++ +++e++  + +d+++   + a+++gv+  ++    l ++++  +id+v+ at +g h +
    CTQ28552.1  5 KVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLArARRLGVATTHEgvggLMQMAEFADIDFVFDATSAGAHIK 85
                  79************9999999899988888887776554445788888877777777888888779**9999999977744 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   8.2e-05      0.21      35     125 ..       2     101 ..       1     128 [. 0.73
   2 ?   -1.8   0.0      0.65   1.7e+03      47      70 ..     222     245 ..     221     255 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.2e-05
                   TTSEEEEES-SHHHHHHH....HHHHHTT-EE.EEESSSHHHHHCHHHHTC..EECSHHHHHHH-SE..EEE-S--STTTTTSBSHHHHHCSTTTEE CS
  2-Hacid_dh_C  35 sgktvGiiGlGrIGqava....krlkafgmkv.iaydrskkkeeeeeelgv..elvsleellaesDi..vslhlpltpetrhlinaeelakmkkgai 122
                   ++++v+iiG G+IG+ ++    +  + ++m v +++d++ +  +++++lgv  +++ +  l++ +++  +  +  +t +  h+ n+++l++ k+g  
    CTQ28552.1   2 RKRKVAIIGSGNIGTDLMikilRHGQHLEMAVmVGIDPQSDGLARARRLGVatTHEGVGGLMQMAEFadIDFVFDATSAGAHIKNDAALREAKPGIR 98 
                   6799**********97542111555688886625688887766667777664344466666666666335667788999999999999999999988 PP

                   EEE CS
  2-Hacid_dh_C 123 liN 125
                   +i 
    CTQ28552.1  99 VID 101
                   875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.65
                   HHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  47 IGqavakrlkafgmkviaydrskk 70 
                   I+ ++a++++a+++ v +y  +++
    CTQ28552.1 222 IAASIAEMAAAVQAYVPGYRLKQQ 245
                   889999999999999999988766 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00012      0.31      11     100 ..       2      95 ..       1     109 [. 0.71

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                   TT-EEEEES-SHHHH.HHHHHHHCCT-CEEEEEESSHHHHHHHHHHH.T.ET-EEEEGCGHHHHH..HT-SEEEE-SSSSS-SB-HHHHHCCHH CS
  Shikimate_DH  11 kekkvlliGaGemae.lvakhLlakgvkkvvvaNRtlerakelaeel.kgeeiealkleelkell..aeadvvisataseepilekeeveealk 100
                   +++kv +iG G++++ l++k L + +  +++v+     + + la+    g+ ++   +  l+++   a++d v+ at++  +i + ++++ea+ 
    CTQ28552.1   2 RKRKVAIIGSGNIGTdLMIKILRHGQHLEMAVMVGIDPQSDGLARARrLGVATTHEGVGGLMQMAefADIDFVFDATSAGAHIKNDAALREAKP 95 
                   5789*********97377888888889999999877777777766542344455555555555441156778********99999999988874 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0005       1.3       1      87 [.      10     100 ..      10     120 .. 0.66
   2 ?    1.0   0.1      0.25   6.5e+02      60      80 ..     210     230 ..     190     236 .. 0.81
   3 ?   -2.0   0.1       2.1   5.5e+03      73     102 ..     279     307 ..     278     315 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0005
                    --SHHHHHHHHHHHH---S..SEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-..S--HHHHTTHHHHHHTTEEEE CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqse..ielelvavadrdsllskdrkallasealtldlddliahldpdvvVEc..asseavaelvlkaLkagkdvv 87 
                    G G+iG++++ +++r+ +   + +++ +  ++d l++++r+  +++ + +  l ++++++d+d v ++  a+     + +l+  k g+ v+
     CTQ28552.1  10 GSGNIGTDLMIKILRHGQHleMAVMVGIDPQSDGLARARRLGVATTHEGVGGLMQMAEFADIDFVFDAtsAGAHIKNDAALREAKPGIRVI 100
                    89*******9999999987333333333344445555556555555566666666666669*******44444455566666666666665 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.25
                    -EEEEE-S--HHHHTTHHHHH CS
  NAD_binding_3  60 pdvvVEcasseavaelvlkaL 80 
                    + v+ E+as+ea+a  ++++ 
     CTQ28552.1 210 VYVLSELASQEAIAASIAEMA 230
                    6788899******99988765 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.1
                    HTTHHHHHHTTEEEE-S--CGGG-HHHHHH CS
  NAD_binding_3  73 aelvlkaLkagkdvvtankgaladealyee 102
                    a ++l+a + + d++t    a a e+   +
     CTQ28552.1 279 AAHYLPAYAGNLDIMTSAALATA-EQMAGA 307
                    56888888889999998888888.444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2380.31
//
Query:       CTQ28553.1  [L=269]
Description: 2-keto-4-pentenoate hydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-19   68.0   0.0    1.1e-18   67.7   0.0    1.1  1  FAA_hydrolase    Fumarylacetoacetate (FAA) hydrolase family
  ------ inclusion threshold ------
       0.11   12.7   0.2       0.37   10.9   0.1    1.9  2  FbpC_C_terminal  FbpC C-terminal regulatory nucleotide bindin


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   1.2e-22   1.1e-18      25     217 ..      78     259 ..      41     260 .. 0.80

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 1.2e-22
                    EEEEEEGGGE.EETTE..EE-TTSSSS-EE......EEEEEEEESS-B--T.--HHHHHTTEEEEEEEEEEE-SBGGG---.HHHHHHTGGGEEEE CS
  FAA_hydrolase  25 drhiplepvfflkrasslvgpgdpirrPagsekldyEvELavvigkplrev.lsveeAedaiaGytllnDvsaRdlqaeekaplgwflgksfdtft 119
                    d+++          a+   g++++++  +   ++++E+E+a+v+ ++l ++ ++ +e ++ai +++ +++v+   + +++   +++++++++++  
     CTQ28553.1  78 DFGTLF--------ADMCYGDNAEVPFGRV-LQPKVEAEIALVLKQDLPHAdTTFDELYNAIEWVLPALEVVGSRIRDWSIGFVDTVADNASCGLY 164
                    333333........3444444444444444.44567**********888888799*****************8888888885679***99999*** PP

                    EE-B--B-.STT---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH.....-B-TT-EEEEEES.......S--EE--TT-EEEEEETTT CS
  FAA_hydrolase 120 piGpwivtpdeledpedlelrlrvngeevqdsntkdmifspaeliahlsagl.....tLepGdliltGTpsgvgaeeeslkflkdgDeveveiegl 210
                    +iG  + +p+ l d +++++ ++ n+e v++++ ++++ +p +   +l++ l     +L++Gd++ltG + g      +++ +++gD  +++ieg+
     CTQ28553.1 165 VIGGPAQRPAGL-DLKQCAMHMTRNQELVSSGRGSECLGHPLNAAVWLARKLaslgePLRAGDIVLTGAL-G------PMVTINEGDSFVAHIEGI 252
                    ******665555.89****************************99999998888888*************.4......79**************** PP

                    EEEEEEE CS
  FAA_hydrolase 211 GelrnrV 217
                    G++++r+
     CTQ28553.1 253 GSVAARF 259
                    ***9986 PP

>> FbpC_C_terminal  FbpC C-terminal regulatory nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.61   5.5e+03      25      35 ..     111     121 ..     109     124 .. 0.79
   2 ?   10.9   0.1   4.2e-05      0.37      19      48 ..     222     251 ..     219     257 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.61
                      EEEEEESS--- CS
  FbpC_C_terminal  25 VlTlnLpsAPv 35 
                      Vl + Lp+A +
       CTQ28553.1 111 VLKQDLPHADT 121
                      78889999976 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 4.2e-05
                      EEETTEEEEEEESS----TTTSEEEEEE-S CS
  FbpC_C_terminal  19 lraGqtVlTlnLpsAPvLsdGisaVlyLDG 48 
                      lraG  VlT +L    ++ +G s V++++G
       CTQ28553.1 222 LRAGDIVLTGALGPMVTINEGDSFVAHIEG 251
                      79**************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2117.19
//
Query:       CTQ28554.1  [L=288]
Description: 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-25   87.8   0.2    6.5e-15   55.5   0.2    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
    3.6e-22   80.0   0.2    4.2e-22   79.8   0.2    1.0  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.2e-15   57.4   0.0    7.1e-15   54.9   0.0    1.9  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0033   16.2   0.0     0.0039   15.9   0.0    1.2  1  Ndr            Ndr family
     0.0042   17.3   0.0     0.0081   16.3   0.0    1.4  1  FokI_N         Restriction endonuclease FokI, recognition dom
      0.008   15.9   0.1      0.016   14.8   0.1    1.5  1  Esterase       Putative esterase
  ------ inclusion threshold ------
      0.012   14.7   0.0      0.017   14.2   0.0    1.2  1  DUF1057        Alpha/beta hydrolase of unknown function (DUF1
      0.056   12.9   0.1       0.32   10.4   0.0    2.3  3  Peptidase_S9   Prolyl oligopeptidase family
      0.071   13.2   0.0       0.21   11.7   0.0    1.8  2  Abhydrolase_4  TAP-like protein
      0.091   12.1   0.0       0.15   11.4   0.0    1.3  1  DUF915         Alpha/beta hydrolase of unknown function (DUF9
       0.11   11.6   0.2        1.2    8.1   0.2    2.0  2  DUF2048        Abhydrolase domain containing 18


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.2     4e-18   6.5e-15       3     107 ..      38     147 ..      36     215 .. 0.75
   2 !   30.8   0.0   1.4e-10   2.3e-07     201     256 ..     221     273 ..     189     274 .. 0.78

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 4e-18
                    EEEE-STTTCGGGGTTGHHHHHHHHT...TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHG CS
  Abhydrolase_1   3 lvilhGlpgssdvwaerglapaLakd...gfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyp 95 
                    +v+lhG + ++  wa+  + ++++     g++v+llD +G g+S++  ++     + +  a++l+ ++d+lg+dk++l+G SmGG  a a+ +  p
     CTQ28554.1  38 VVMLHGSGPGATGWAN--FSRNIDPLveaGYRVLLLDCPGWGKSDAIVNS---GSRSDLNARILKSVVDQLGIDKVHLLGNSMGGHSAVAFTLSWP 128
                    7778875554444655..44444433444********************6...44666577888899***************************** PP

                    GGEEEEEEESE.......C CS
  Abhydrolase_1  96 erVkalvllga.......i 107
                    erV++lvl+g+        
     CTQ28554.1 129 ERVAKLVLMGGgtggmslF 147
                    **********977776551 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 1.4e-10
                    HHHHHCTHHHHSEEEEEEETTCSSSCH.HHHHHHHHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 201 llrlrelknvlaptlvisgtsDplvpp.kaledlaqllpkkrlvvisdagHlafleg 256
                      r   l +++aptl+++g++D+ vp    l+ la+   +++l+++ d+gH+a++e+
     CTQ28554.1 221 GPR---LGEISAPTLIVWGRNDRFVPMdAGLRVLAGI-AGSELHIYRDCGHWAQWEH 273
                    233...456999***************7777777766.555**************98 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.2   2.6e-25   4.2e-22       1     218 [.      38     278 ..      38     280 .. 0.66

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 2.6e-25
                    EEEE--GC.....G..CHHHHHHHHCCTCEEEEE--TTSTS-.....GGCS--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC... CS
  Abhydrolase_6   1 vlllHGagssassW..lvapLaallaagvhvlapDlpGhGrs.....dpppldledladlaalldelaagggpvvlvGHSlGGalalaaapla... 86 
                    v++lHG+g +a++W  + +++ +l  ag++vl +D+pG G s     +++  dl++ + l  ++d l  g ++v+l+G+S+GG+ a a    +   
     CTQ28554.1  38 VVMLHGSGPGATGWanFSRNIDPLVEAGYRVLLLDCPGWGKSdaivnSGSRSDLNA-RILKSVVDQL--GIDKVHLLGNSMGGHSAVA---FTlsw 127
                    89************6448899*******************6623333444444433.4446666666..6**************9999...55556 PP

                    ....EE.EEES-..----TTT.S----TTHHHHHHTT-CCCCHCCH...........S-HSCCCCHHHC.......CCCHCHCCCGHHHHCCHHCH CS
  Abhydrolase_6  87 ..lvvg.vlldppptalpagl.laaalelllallallrllawlsre...........plprlfladeda.......daawrarlarlaallaglgl 160
                      +v++ vl+ +  ++++++l  +++ e ++ l+al+r ++  +++           +l++ +++   a       +++  +++   +   ++ ++
     CTQ28554.1 128 peRVAKlVLMGG--GTGGMSLfTPMPTEGIKLLNALYREPTIENLKkmmsifvfdtrDLTEALFE---ArlnnmlsRRDHLDNFVKSLEANPKQFP 218
                    676666999999..444444455555555555555555544442222223333222234444444...1122223345555555555555555556 PP

                    TTCCHHTT-TTGCEEEC.TT-CHHHHCHHCCCH....STTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 161 lpaaawadlpvpllvlg.geDplvprllerlla....qagarlpvvlpgaGHlphleepdeva 218
                       +++  + +p+l+++  +D+ vp  +++ l+    +ag +l ++++++GH+ + e++d ++
     CTQ28554.1 219 DFGPRLGEISAPTLIVWgRNDRFVP--MDAGLRvlagIAGSEL-HIYRDCGHWAQWEHADSFN 278
                    6677999999999999659999***..8877776668888888.***********99999876 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   4.3e-18   7.1e-15       4     232 ..      35     267 ..      32     273 .. 0.73

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 4.3e-18
  Hydrolase_4   4 kavvvlvHGlaehsg...ryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaaf.vekvkeehpelplfllGhSmGGliallyllry 97 
                  k +vv++HG +  +     +++ ++ L+++G+ v+ lD  G+G+s+   + v+s +    Dl+a  ++ v+++ +  ++ llG SmGG  a++++l  
   CTQ28554.1  35 KETVVMLHGSGPGATgwaNFSRNIDPLVEAGYRVLLLDCPGWGKSD---AIVNSGS--RSDLNARiLKSVVDQLGIDKVHLLGNSMGGHSAVAFTLSW 127
                  7899*****98777611145556788*******************5...4444444..4566665247777888899********************* PP

  Hydrolase_4  98 pdkvaglilsaPalkikaklkappllklllkllgkllpklqv..snnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleeraakit.. 191
                  p++va+l+l++   +  +   ++p+     kll+ l+++ ++   +++ + ++ + ++  +a+ +  l     + + l ++++ +++  ++ +++   
   CTQ28554.1 128 PERVAKLVLMGGGTGGMSL--FTPMPTEGIKLLNALYREPTIenLKKMMSIFVFDTRDLTEALFEARLNNMLSRRDHLDNFVKSLEANPKQFPDFGpr 223
                  *************998866..66666667788888888888833223333445566666666666666555555555555555555555555544444 PP

  Hydrolase_4 192 .....lPllllhGeaDkvvdpeasrelyerlgskdktlklypglyH 232
                       +P+l++ G +D+ v+++a  ++++ ++    +l++y  + H
   CTQ28554.1 224 lgeisAPTLIVWGRNDRFVPMDAGLRVLAGIA--GSELHIYRDCGH 267
                  44555*******************88887777..579999999999 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.4e-06    0.0039      86     204 ..      93     212 ..      67     284 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.4e-06
                 HTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHH...HHH.......TTTS-HHHHHHHHHS-HHHHHHT-HH CS
         Ndr  86 adqllavldhfklksviglGvgaGAyilarfalkhperveglvLinitskaagwvewake...KlsskllkkvgltdllkdlllahkFgkeeksensdl 181
                 a  l++v+d++ +++v  lG   G    + f+l++perv  lvL+   +   ++   + +   Kl  + l++    ++lk ++    F     +e    
  CTQ28554.1  93 ARILKSVVDQLGIDKVHLLGNSMGGHSAVAFTLSWPERVAKLVLMGGGTGGMSLFTPMPTegiKLL-NALYREPTIENLKKMMSIFVFDTRDLTE-ALF 189
                 456789***************************************887777776554432122555.3555556666666666666666655533.444 PP

                 HHHHHHHHHT-TTHHHHHHHHHH CS
         Ndr 182 vreyrkllkerlnsknlelylea 204
                  ++  ++l++r+  +n  + lea
  CTQ28554.1 190 EARLNNMLSRRDHLDNFVKSLEA 212
                 55555566666665555555554 PP

>> FokI_N  Restriction endonuclease FokI, recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     5e-06    0.0081      11      61 ..     166     217 ..     161     221 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5e-06
      FokI_N  11 sleslkkvvaifv.egskvhrelveeklpklvsekdGkkelleelearelsi 61 
                 ++e+lkk+++ifv ++ ++ + l e +l++++s +d  +++++ lea++++ 
  CTQ28554.1 166 TIENLKKMMSIFVfDTRDLTEALFEARLNNMLSRRDHLDNFVKSLEANPKQF 217
                 689*********9456688999**************************9875 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1     1e-05     0.016     117     143 ..     108     134 ..      88     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1e-05
                 EEEEEETHHHHHHHHHHHCSTTTCCEE CS
    Esterase 117 ravaGqSmGGlgALilalkhpdrFgsv 143
                   ++G SmGG++A+   l +p+r +  
  CTQ28554.1 108 VHLLGNSMGGHSAVAFTLSWPERVAKL 134
                 4799******************98765 PP

>> DUF1057  Alpha/beta hydrolase of unknown function (DUF1057)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     1e-05     0.017      32     126 ..      32     140 ..      23     190 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1e-05
     DUF1057  32 gsplGtvvalhGs.PGshnDfkYir..skleelkiRligvnyPGfefvtgylgqkytnaeRnsyskalleelelkgklillghsRGcenaLqlavtl.. 125
                 g+ + tvv lhGs PG+     + r  + l e+  R++ ++ PG  + ++  +            k+++++l ++ k+ llg s G+ +a+  + +   
  CTQ28554.1  32 GDGKETVVMLHGSgPGATGWANFSRniDPLVEAGYRVLLLDCPGWGKSDAIVNSGSRSDLNARILKSVVDQLGID-KVHLLGNSMGGHSAVAFTLSWpe 129
                 66788*******98998766666552267999******************999998888888999********96.9*************999888755 PP

     DUF1057 126 ..........e 126
                            
  CTQ28554.1 130 rvaklvlmggG 140
                 44444444443 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   1.8e+03       2      26 ..      53      77 ..      52      89 .. 0.85
   2 ?   -1.1   0.1      0.66   1.1e+03      64      87 ..     106     129 ..      95     139 .. 0.81
   3 ?   10.4   0.0    0.0002      0.32     141     205 ..     219     285 ..     131     288 .] 0.74

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
                  ---HHHHHHHCCT-EEEEE--TTSS CS
  Peptidase_S9  2 sfsselqlladrGyvvvvanirGsg 26
                  +fs ++  l ++Gy v+  +  G g
    CTQ28554.1 53 NFSRNIDPLVEAGYRVLLLDCPGWG 77
                  6899999999*******99998865 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.66
                   GGEEEEEETHHHHHHHHHHHH-GG CS
  Peptidase_S9  64 erlaitGgSyGGyltgaalnqrpd 87 
                   +++ + G S GG  + a   + p+
    CTQ28554.1 106 DKVHLLGNSMGGHSAVAFTLSWPE 129
                   788899******988877666665 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.0002
                   -.......---EEEEEEETT-SSS-THHHHHHHHHHH--S-S.EEEEEETTS-SSTTSSHHHHHHHHHHHHHH CS
  Peptidase_S9 141 k.......aypplLlihGlaDdrvppaealklvaaLqkkgkn.vlllifpdegHgvgkprakveelarllaFl 205
                           +++p+L++ G +D  vp+  +l+++a         ++l+i+ d gH+++  ++     + +l+Fl
    CTQ28554.1 219 DfgprlgeISAPTLIVWGRNDRFVPMDAGLRVLAGI-----AgSELHIYRDCGHWAQ-WEHADSFNQLVLNFL 285
                   25666666899********************99855.....4499*********998.444445555566666 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.6   7.5e+03      63      84 ..      12      33 ..       7      49 .. 0.72
   2 ?   11.7   0.0   0.00013      0.21      34      92 ..     228     286 ..     210     288 .] 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.6
  Abhydrolase_4 63 avlvtvegeGHgalaagntCvd 84
                   ++ + v+++G +  +  n+C d
     CTQ28554.1 12 SRFLNVDEGGRTLRIHINDCGD 33
                   6777888888887778888876 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00013
  Abhydrolase_4  34 aapvLllqnerDpaTPyegakklakalggavlvtvegeGHgalaagntCvdkavdaYLl 92 
                    +ap+L++ +++D  +P+  + ++   + g++l ++++ GH a  ++ ++ +++v ++L+
     CTQ28554.1 228 SAPTLIVWGRNDRFVPMDAGLRVLAGIAGSELHIYRDCGHWAQWEHADSFNQLVLNFLA 286
                    489**************************************998***********9997 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.9e-05      0.15      85     123 ..      92     126 ..      82     140 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.9e-05
      DUF915  85 qakwlkkvlseLkkkYnikkfnavGhSmGglaltsYlee 123
                 +a  l    +    + +i+k+ ++G SmGg +++ ++ +
  CTQ28554.1  92 NARIL----KSVVDQLGIDKVHLLGNSMGGHSAVAFTLS 126
                 44455....55555568*****************99875 PP

>> DUF2048  Abhydrolase domain containing 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2   0.00076       1.2     163     207 ..      93     137 ..      78     155 .. 0.76
   2 ?    1.4   0.0     0.085   1.4e+02     298     349 ..     233     284 ..     227     287 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00076
     DUF2048 163 slvllhwlereGyGplgltGlSmGGhmaslaasnwpkplvlvpcl 207
                 ++ l   +++ G  ++ l G SmGGh a   +  wp  ++ + ++
  CTQ28554.1  93 ARILKSVVDQLGIDKVHLLGNSMGGHSAVAFTLSWPERVAKLVLM 137
                 44455556666*****************99999999999877665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.085
     DUF2048 298 vvaAkdDayvpresvaslqeiwpgsevr.yldgGHvsayllkkklfrkaivea 349
                 +v  ++D++vp ++   +    +gse + y d GH      + + f + + + 
  CTQ28554.1 233 IVWGRNDRFVPMDAGLRVLAGIAGSELHiYRDCGHWA-QWEHADSFNQLVLNF 284
                 67889******9999955555567776527999**74.557888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 2410.83
//
Query:       CTQ28555.1  [L=314]
Description: 2,3-dihydroxyphenylpropionate 1,2-dioxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-81  273.4   0.0    1.8e-81  273.2   0.0    1.0  1  LigB      Catalytic LigB subunit of aromatic ring-opening dio
  ------ inclusion threshold ------
       0.22   10.5   0.0       0.35    9.9   0.0    1.3  1  TrfA      TrfA protein


Domain annotation for each model (and alignments):
>> LigB  Catalytic LigB subunit of aromatic ring-opening dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.2   0.0     2e-85   1.8e-81       1     273 []       4     306 ..       4     306 .. 0.97

  Alignments for each domain:
  == domain 1  score: 273.2 bits;  conditional E-value: 2e-85
        LigB   1 galllsHvppilaavdgkeqealrekvikgyesireriaeksPdtiivvsphhlt....dvnpvfvlgvaeefeaiddfgkflprleyelkgnpeLaek 95 
                 ++++lsH p++ + vd +eq++l+e v+++++ +r+riae+ P+++++++p+h++    dv+p+f+lgv++  +ai+df     +++++l+++ eLae+
  CTQ28555.1   4 YLHCLSHTPLV-GFVD-PEQAVLDE-VNGVIADARRRIAEFDPELVVLFAPDHYNgffyDVMPPFCLGVGA--TAIGDFA----SAAGDLPVPAELAEA 93 
                 589********.7777.69999888.*********************************************..*****99....*************** PP

        LigB  96 iaealkksgidlavesnsmklDHGtlvPLelmlp..deakvpvikvslntvaypllsferlykLGeAlrkaveeldknvlilgsGglsHqlegdeaaka 192
                 +a+a+ +sgidlav s++m++DHG+++PLe++l+  d   vpv++v++n+va pl++f+r++ LGeA++++ ++l+k+vlilgsGglsHq++++e+aka
  CTQ28555.1  94 CAHAILNSGIDLAV-SYNMQVDHGFAQPLEFLLGglD--RVPVLPVFINGVAAPLPGFQRTRLLGEAMGRFLNTLNKRVLILGSGGLSHQPPVPELAKA 189
                 **************.*******************666..9*********************************************************** PP

        LigB 193 daq.....................................tlllneefdeelldllkegrveelckmskeelsaaagheeeelvplvvalGalsgdkae 254
                 da+                                       +ln+++d++++ ll++gr+ el+++ ++elsa ag++++e++++v+a++als  +++
  CTQ28555.1 190 DAHlrdrllgggkqlppdererrqqrvinaarrftedphsLHPLNPVWDNRFMSLLEQGRLSELDAIGNDELSAMAGKSTHEIKTWVAAFAALSA-FGR 287
                 ***************************************6666***************************************************5.*** PP

        LigB 255 lrkelvsyeglpavsavfg 273
                 +r+e+++y+++p+++a+fg
  CTQ28555.1 288 WRSEGRYYRPIPEWIAGFG 306
                 *****************96 PP

>> TrfA  TrfA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   3.9e-05      0.35     182     206 ..      36      60 ..      23      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 3.9e-05
        TrfA 182 rcqveideeivvlfagdhytkfvwe 206
                 r   e d e+vvlfa dhy  f ++
  CTQ28555.1  36 RRIAEFDPELVVLFAPDHYNGFFYD 60 
                 445689**************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2392.29
//
Query:       CTQ28556.1  [L=554]
Description: 3-(3-hydroxyphenyl)propionate hydroxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-83  280.6   0.0    2.4e-83  280.3   0.0    1.1  1  FAD_binding_3   FAD binding domain
    1.5e-05   24.4   0.0     0.0026   17.1   0.1    2.4  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    7.6e-05   22.1   0.0    0.00076   18.8   0.1    2.1  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    0.00041   19.2   0.4     0.0018   17.0   1.0    1.7  2  HI0933_like     HI0933-like protein
    0.00046   20.7   0.4     0.0011   19.5   0.3    1.7  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0017   18.5   0.1      0.004   17.4   0.1    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0058   16.3   1.3      0.047   13.3   0.4    2.5  3  DAO             FAD dependent oxidoreductase
     0.0062   15.8   0.2       0.01   15.1   0.2    1.3  1  Thi4            Thi4 family
  ------ inclusion threshold ------
      0.018   14.1   0.6      0.045   12.8   0.3    1.7  2  Lycopene_cycl   Lycopene cyclase protein
      0.037   13.4   0.0       0.25   10.7   0.1    2.2  3  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.038   13.3   0.0      0.066   12.6   0.0    1.3  1  ThiF            ThiF family
      0.065   12.8   0.3        0.1   12.2   0.3    1.2  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.12   12.6   0.1       0.25   11.6   0.1    1.6  1  TrkA_N          TrkA-N domain
       0.14   11.5   0.4        3.5    6.9   0.9    2.1  2  FAD_oxidored    FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.3   0.0   1.9e-86   2.4e-83       2     348 ..      16     352 ..      15     353 .. 0.95

  Alignments for each domain:
  == domain 1  score: 280.3 bits;  conditional E-value: 1.9e-86
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH...CHH CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradle...les 94 
                    ++V+IVGaGp+Glm a+ L + G++v++vek +t +++pra g+++++++ ++ +Gl + +l +++p + m++++ +      +  ad++    e+
     CTQ28556.1  16 AQVAIVGAGPVGLMMANYLGQMGISVLVVEKLATLIDYPRAIGIDDESLRAMQAVGLVNDVLPHTTPWHAMRFLTPKG-----RCFADIQpmtDEF 106
                    69****************************************************************************.....556665555347* PP

                    CST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEEEEEEEE CS
  FAD_binding_3  95 spervtvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvyeagvld 189
                    +++r  ++ q++++ ++++ +++ + ++  f++eve++ q +++vt ++++  +ge+etvra++lv++DGg S +r+tl i+feg+    ++ v+d
     CTQ28556.1 107 GWSRRNAFIQPQVDAVMYHGLQRFPqVRCLFSREVEAFSQKGDSVTLNLKGP-DGERETVRADWLVACDGGASFIRRTLNIPFEGKTAPNQWIVID 201
                    **************************************************99.79999*******************************9****** PP

                    EEEEC.-SCCCTTCCEEEEECCTTEEEEEECCE.TEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEEEEEEEEEEEEEEESSSEE CS
  FAD_binding_3 190 vlfda.dlsdiveplvlilsaesrgvmviPlen.tlerfyvqvearaekeersekfteeevkarlreivgektldveieevsawtvaqrvaekyrk 283
                    + +d   ++     +v++ +++ r     P+ + +l + ++ +e++   +e++ + +e +  +rl + v ++  +ve+ + +++t+++r+ae++r 
     CTQ28556.1 202 IANDPlATP-----HVYLCCDPVR-----PYVSaALPHGVRRFEFMVMPGETEAQLSEPHNMRRLLSKVLPDPDRVELIRQRVYTHNARLAERFRI 287
                    *99986666.....7999988866.....888888899999******************************************************* PP

                    TTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 284 grvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaavlkGeAkeelLdtYeeerravaqavvdf 348
                    +rv+laGDAaHi+p+++GqG N++++Da+nLawkLa+v++G+A+e+lLd+Y++err++a+a++d 
     CTQ28556.1 288 DRVLLAGDAAHIMPVWQGQGYNSGMRDAFNLAWKLALVVNGKAGEALLDSYQQERRDHAKAMIDL 352
                    **************************************************************986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1     2e-06    0.0026     143     178 ..      16      51 ..       3      71 .. 0.77
   2 ?    4.5   0.0     0.013        17     197     276 ..     132     217 ..     110     231 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2e-06
                  SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  +++++vG+G++G+ +A +l ++g  v +ve + +l 
   CTQ28556.1  16 AQVAIVGAGPVGLMMANYLGQMGISVLVVEKLATLI 51 
                  568888888888888888888888888888877765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.013
                  TEEEEESCEEEEEEETTEEEE..EEETTSCE..EEESEEEE-S.-EEES-HHCS.HCCT-EEEETTEEE--TTSBES.STTEEE-GG CS
                  xxxxxxxxxxxxxxxxxxxxx..xxxxxxxx..xxxxxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
  Pyr_redox_2 197 Gvevklgtsvkeidgngekle..vvledgee..idadlvvvav.Gvrpstelle.eklglelderggivvdeflrtn.vpgiyaiGD 276
                   v++ +  +v+++ ++g++++  ++  dge+  + ad +v +  G +  +++l+    g +  ++ +iv+d        p++y++ D
   CTQ28556.1 132 QVRCLFSREVEAFSQKGDSVTlnLKGPDGERetVRADWLVACDgGASFIRRTLNiPFEGKTA-PNQWIVIDIANDPLaTPHVYLCCD 217
                  688999999999999999555457777777677999*9999994555566666665555555.899998888876544799999988 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   5.9e-07   0.00076       2      30 ..      20      47 ..      19      82 .. 0.91
   2 ?    0.8   0.0      0.18   2.3e+02     208     269 ..     113     178 ..      95     215 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.9e-07
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkg 30
                 I+GaGP Gl +a  l ++g+ ++l++Ek 
   CTQ28556.1 20 IVGAGPVGLMMANYLGQMGI-SVLVVEKL 47
                 9*******************.7*****95 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.18
  Pyr_redox_3 208 yslkpdienrleelvke.ekikvlfnaevkeikekeeeykvk..tedgkkvevkddvvla.tGykp 269
                  + ++p +   + +++++  +++ lf  ev++ ++k  +++++   +dg++ +v+ d ++a  G  +
   CTQ28556.1 113 AFIQPQVDAVMYHGLQRfPQVRCLFSREVEAFSQKGDSVTLNlkGPDGERETVRADWLVAcDGGAS 178
                  456666666666666667779************999988766437889888887777777455544 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.0   1.4e-06    0.0018       2      33 ..      17      48 ..      16      52 .. 0.92
   2 ?   -1.7   0.0       0.7     9e+02     123     167 ..     132     179 ..     127     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.4e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 +v+++G+G+ Glm A  +++ g +Vl++ek  
   CTQ28556.1 17 QVAIVGAGPVGLMMANYLGQMGISVLVVEKLA 48
                 79***************************965 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.7
                  T-EEE-S--EEEEECETTE.EEEEE.....TTEEEEESEEEE----SS- CS
  HI0933_like 123 gvklrletevksvekeedgkfrvktk....seeeleadklvlAtGGlSi 167
                  +v++  ++ev++++++ d+ +++++k    ++e+++ad lv   GG+S+
   CTQ28556.1 132 QVRCLFSREVEAFSQKGDS-VTLNLKgpdgERETVRADWLVACDGGASF 179
                  5777788899999887777.777776566678899999999999*9996 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.3   8.6e-07    0.0011       2      35 ..      18      51 ..      17      59 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 8.6e-07
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                v++vG+G +gl++A++l ++g +V vve   +l 
  CTQ28556.1 18 VAIVGAGPVGLMMANYLGQMGISVLVVEKLATLI 51
                89**************************988876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   3.1e-06     0.004       1      28 [.      20      47 ..      20      50 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.1e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   IvGaG  Gl +A +L + g++vl++ek 
     CTQ28556.1 20 IVGAGPVGLMMANYLGQMGISVLVVEKL 47
                   9*************************95 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.4   3.7e-05     0.047       2      28 ..      18      46 ..      17      49 .. 0.94
   2 ?    0.4   0.0      0.29   3.7e+02     161     229 ..     133     204 ..     108     305 .. 0.61
   3 ?   -1.9   0.0       1.5   1.9e+03      56     106 ..     459     506 ..     439     535 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.7e-05
                EEEECTSHHHHHHHHHHHHTT..EEEEES CS
         DAO  2 vviiGGGiiGlstAyeLarrg..Vtllek 28
                v+i+G+G +Gl  A +L + g  V+++ek
  CTQ28556.1 18 VAIVGAGPVGLMMANYLGQMGisVLVVEK 46
                9****************8889*******8 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.29
                 -EEEESECEEEEEEEETCEEEEE..EECT.EEEEEEEE..EEE--GGGHHHH.HTT.CTTTSEEEEEEEEEEEEEE CS
         DAO 161 veilegtevtgleeedgkvwgve..rttp.gendaada..vVnaaGawsdll.gll.keldlpispvrgqvlvlkp 229
                 v++l+ +ev+++++++     v    + p ge+++++a  +V + G  s ++ ++l  +++ ++ p +  v+ +++
  CTQ28556.1 133 VRCLFSREVEAFSQKG---DSVTlnLKGPdGERETVRAdwLVACDGGAS-FIrRTLnIPFEGKTAPNQWIVIDIAN 204
                 7888889999997653...333333334446664445554888888665.55444432223444444444444444 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHHHHSSTTSEEE.EEEEEEESSHHHHHHHHHHHHHH CS
         DAO  56 elarlslealeelreleeelgididyrr.tGllslaadeeelealdkllall 106
                 ++ar+ + ++++++ + e   i+ + ++ +G+l ++++   +++l+ ++a+ 
  CTQ28556.1 459 QIARWRAIGVRFIQVVPEV-QIHREQDNaPGTLRVGDT---QNRLKSWFAQH 506
                 6666666666666666653.555553334677777644...44555555542 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2     8e-06      0.01      18      49 ..      16      46 ..       8      50 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8e-06
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailer 49
                + v+ivGaG+ GL  a yl++  ++ v+++e+
  CTQ28556.1 16 AQVAIVGAGPVGLMMANYLGQM-GISVLVVEK 46
                689*******************.*******97 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   3.5e-05     0.045       2      32 ..      18      46 ..      17      56 .. 0.90
   2 ?   -2.0   0.0       1.1   1.4e+03      43      94 ..     302     351 ..     279     360 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.5e-05
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvliea 32
                   v+++GaGp gl +A+ l   ++g++v+++e 
     CTQ28556.1 18 VAIVGAGPVGLMMANYL--GQMGISVLVVEK 46
                   89***************..**********96 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
  Lycopene_cycl  43 vWsdefedlgaleecvehsWsgtivylddgkkillgraYgrvsskrlkeell 94 
                    vW+ ++ + g + ++ +  W+ + v   +  + ll+  Y++ ++++ k+++ 
     CTQ28556.1 302 VWQGQGYNSG-MRDAFNLAWKLALVVNGKAGEALLD-SYQQERRDHAKAMID 351
                    8999999999.9999999999998888888888888.899999888887765 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00019      0.25      35      70 ..      14      49 ..       4      73 .. 0.83
   2 ?   -4.0   0.0       6.2     8e+03      84     124 ..     140     180 ..     136     180 .. 0.81
   3 ?   -1.1   0.0      0.81     1e+03     141     167 ..     325     351 ..     322     358 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00019
                  TTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C 35 sgktvGiiGlGrIGqavakrlkafgmkviaydrskk 70
                  +  +v+i+G+G +G  +a++l ++g+ v+++++  +
    CTQ28556.1 14 HTAQVAIVGAGPVGLMMANYLGQMGISVLVVEKLAT 49
                  5679*************************9987655 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6.2
                   SHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEE CS
  2-Hacid_dh_C  84 sleellaesDivslhlpltpetrhlinaeelakmkkgaili 124
                   ++e++ ++ D v+l+l   +  r+ + a+ l ++  ga +i
    CTQ28556.1 140 EVEAFSQKGDSVTLNLKGPDGERETVRADWLVACDGGASFI 180
                   56777888899999999999999999998888888777776 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.81
                   HHTTSCCEEEES--SSSSSGTCHHHHH CS
  2-Hacid_dh_C 141 LksgkiagaalDvfeeeplpedsplle 167
                   + +gk + a lD +++e  ++ + +++
    CTQ28556.1 325 VVNGKAGEALLDSYQQERRDHAKAMID 351
                   5689999**********8887766655 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.1e-05     0.066      11      46 ..       7      43 ..       3      52 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.1e-05
                HHHHHHHT.SEEEEE--SHHHHHHHHHHHHHTTTEEE CS
                xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 11 dgqekLrd.skvllvGaGglGsellknLalsGvgklt 46
                d q ++++ ++v++vGaG +G  ++ +L  +G++ l 
  CTQ28556.1  7 DIQPAVQHtAQVAIVGAGPVGLMMANYLGQMGISVLV 43
                55666666689*********************98665 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3     8e-05       0.1       2      31 ..      17      46 ..      16      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8e-05
                    EEEEE--STTHHHHHHHHHHCTSEEEEE-S CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvDi 31
                    +++++G+G vGl++a  l ++g+ v++v +
      CTQ28556.1 17 QVAIVGAGPVGLMMANYLGQMGISVLVVEK 46
                    79*************************986 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1    0.0002      0.25       1      39 [.      18      56 ..      18      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0002
                EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelre 39
                ++i+G+G vG  +a++L + g++v+v++k    ++  r+
  CTQ28556.1 18 VAIVGAGPVGLMMANYLGQMGISVLVVEKLATLIDYPRA 56
                68*****************7768*****98777666655 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.9    0.0027       3.5       2      31 ..      18      47 ..      17      50 .. 0.92
   2 ?    1.7   0.0       0.1   1.3e+02      76     142 ..     103     173 ..      84     181 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0027
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveer 31
                  v +vG+gp G++ A    ++G +vl+ve+ 
    CTQ28556.1 18 VAIVGAGPVGLMMANYLGQMGISVLVVEKL 47
                  99**************************85 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.1
  FAD_oxidored  76 kkrskw.n...tfepevakavleemlaeagvtvllntrlvevekegkriesvtveske..g.rktirAkvfiDA 142
                   +++++w +   + +p+v + +++ + + ++v+ l+ +++++  ++g   +svt++ k   g r+t+rA+  + +
    CTQ28556.1 103 TDEFGWsRrnaFIQPQVDAVMYHGLQRFPQVRCLFSREVEAFSQKG---DSVTLNLKGpdGeRETVRADWLVAC 173
                   4566665234588999999999999999****************98...4455444443357999999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4075.28
//
Query:       CTQ28557.1  [L=270]
Description: DNA-binding transcriptional activator, 3HPP-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-13   50.4   0.2    3.1e-13   49.7   0.2    1.3  1  IclR       Bacterial transcriptional regulator
      2e-11   43.5   1.0      2e-11   43.5   1.0    2.1  2  HTH_IclR   IclR helix-turn-helix domain
    1.1e-06   28.5   0.0    5.1e-06   26.3   0.0    2.1  2  MarR       MarR family
    7.3e-06   25.8   0.7    1.9e-05   24.5   0.1    2.0  1  MarR_2     MarR family
    4.6e-05   22.9   0.0    9.1e-05   21.9   0.0    1.5  1  HTH_24     Winged helix-turn-helix DNA-binding
    9.2e-05   22.3   0.2    0.00066   19.6   0.1    2.4  2  HTH_Crp_2  Crp-like helix-turn-helix domain
    0.00056   20.2   0.2      0.002   18.4   0.1    1.9  2  GAF_2      GAF domain
     0.0017   18.2   0.0     0.0059   16.5   0.0    1.8  2  TrmB       Sugar-specific transcriptional regulator TrmB
     0.0024   18.5   0.1     0.0076   16.9   0.1    1.8  2  GAF        GAF domain
     0.0053   16.7   0.2      0.014   15.4   0.0    1.8  2  HTH_29     Winged helix-turn helix
  ------ inclusion threshold ------
      0.014   15.3   0.1      0.038   13.9   0.0    1.8  1  HTH_11     HTH domain
      0.027   14.2   0.7        3.7    7.3   0.1    2.3  2  DUF4194    Domain of unknown function (DUF4194)
      0.042   13.7   0.1       0.48   10.3   0.0    2.5  2  HTH_23     Homeodomain-like domain
      0.043   13.9   0.0       0.14   12.3   0.0    1.9  1  HTH_28     Helix-turn-helix domain
      0.055   13.1   2.2       0.16   11.7   0.1    2.5  3  GntR       Bacterial regulatory proteins, gntR family
      0.058   13.7   0.0       0.36   11.2   0.0    2.3  2  Rrf2       Transcriptional regulator
      0.068   13.2   0.6       0.26   11.4   0.2    2.3  2  HTH_20     Helix-turn-helix domain
      0.092   12.7   0.0        0.2   11.6   0.0    1.7  1  HTH_36     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.2   3.1e-16   3.1e-13       7     128 ..     135     258 ..     131     259 .. 0.92

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 3.1e-16
                 TSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--.SHHHHHHHHHHHHHHTSEEEES..SSSTTEEEEEEEEE-TTSSEEEEEEEEEE CS
        IclR   7 saiGtrlplyataiGKalLaaldeeeleallerlelkrlterTit.dpeeLleeLakvReqGyavdre..EeeegvrciAapifdasgevvaAvsvsgp 102
                  ++G+rlpl  ta G   La+ +++e++a+++ l   +  e+ ++ +pe L + La++R++Gy  +     +ee +++iA+p+   +++v++ ++++  
  CTQ28557.1 135 AMVGRRLPLLLTASGLTWLAFAPDAERDAIVSMLAARPEAEYQLArEPERLAAILARTRQNGYGENFRgwRQEEKIASIAVPVCS-QQRVIGCLNLVYI 232
                 579******************************99999999987637999*************8765422799***********9.889********** PP

                 TTTSHHHHHHHHHHHHHHHHHHHHHH CS
        IclR 103 tarlteeelkeellalvreaArkisr 128
                 ++ +t e+++++ l++++ +Ar+i++
  CTQ28557.1 233 ASAMTIEQAAQKHLPALQRVARQIEA 258
                 ************************85 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   1.0     2e-14     2e-11       2      51 ..      15      64 ..      14      65 .. 0.97
   2 ?   -2.5   0.2       4.7   4.6e+03      12      27 ..     178     191 ..     177     193 .. 0.58

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 2e-14
                HHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  2 ldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                l+R+l +L++l++ +++ t   lA+ +gl+++tv+RlL tL+e+G+v++ 
  CTQ28557.1 15 LSRGLLLLKLLNKFDGGATPGLLAEFSGLHRTTVRRLLETLQEEGFVRRS 64
                89**********************************************85 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.7
                 -CTTBSS-BHHHHHHH CS
    HTH_IclR  12 laeapqeltlselArr 27 
                 la++p++  l+ + +r
  CTQ28557.1 178 LAREPER--LAAILAR 191
                 6666665..5665555 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   5.1e-09   5.1e-06      16      55 ..      30      69 ..      18      73 .. 0.84
   2 ?   -1.0   0.0       1.8   1.8e+03      16      33 ..     225     242 ..     222     242 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 5.1e-09
                TTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTS CS
        MarR 16 gplsvseLakklgvskstvtrvldrLekkGlieRskspeD 55
                g+++   La+++g++++tv r+l +L ++G+++Rs+s + 
  CTQ28557.1 30 GGATPGLLAEFSGLHRTTVRRLLETLQEEGFVRRSRSDDS 69
                4488889*****************************9875 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.8
                 TTEEHHHHHHHHTS-HHH CS
        MarR  16 gplsvseLakklgvskst 33 
                 g+l++  +a+++ +++++
  CTQ28557.1 225 GCLNLVYIASAMTIEQAA 242
                 77888899*****99985 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   1.9e-08   1.9e-05      11      56 ..      22      66 ..      17      69 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.9e-08
                HHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 11 LaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                L  L   +g+  t+g la+  gl + +v r+l+ L++ G+v+r+++
  CTQ28557.1 22 LKLLNKFDGG-ATPGLLAEFSGLHRTTVRRLLETLQEEGFVRRSRS 66
                5556666666.7********************************97 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   9.1e-08   9.1e-05       8      48 .]      21      62 ..      17      62 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 9.1e-08
      HTH_24  8 ILelLqk.nprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                +L+lL k +++ +   LAe +gl ++tv+r l+ L+eeG+++
  CTQ28557.1 21 LLKLLNKfDGGATPGLLAEFSGLHRTTVRRLLETLQEEGFVR 62
                7999************************************96 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   6.6e-07   0.00066      26      55 ..      36      65 ..      20      80 .. 0.83
   2 ?   -0.9   0.0       1.6   1.6e+03       1      12 [.     183     194 ..     181     216 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.6e-07
                HHHHHTTSSHHHHHHHHHHHHHTTSEEETE CS
   HTH_Crp_2 26 elAsmlGltretvsrilseLkreglisrgr 55
                 lA++ Gl+r tv r+l  L++eg ++r+r
  CTQ28557.1 36 LLAEFSGLHRTTVRRLLETLQEEGFVRRSR 65
                59*************************643 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHC CS
   HTH_Crp_2   1 qRlArfLlrlae 12 
                 +RlA+ L r ++
  CTQ28557.1 183 ERLAAILARTRQ 194
                 688888877533 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.8   1.7e+03       9      64 ..      49     102 ..      41     106 .. 0.53
   2 !   18.4   0.1     2e-06     0.002      85     134 ..     202     257 ..     143     261 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.8
                 HHHHHHHHHSS..EEEEEEE-TTS-EEEE.EEEES-TTSTT-S-B---TT.HHHHHHH CS
       GAF_2   9 dlvldelvelgaalgyillvdddgglrla.awgeaeeefgaaldrplgeg.lvgealr 64 
                 +++l++l+e     g++     d+++rl    ++  ++f++++  +  +  l+ge lr
  CTQ28557.1  49 RRLLETLQE----EGFVRRSRSDDSFRLTiNVRQLSDGFRDEHWISALATpLLGELLR 102
                 444444444....456666666666665555555555555555443333324565555 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2e-06
                 HHHHTT--E..EEEEE-TTS---EEEEE....S......--HHHHHHHHHHHHHHH CS
       GAF_2  85 aghaglrsf..lavPlisegrvvGvlnl....yankppafdeedlelLeelaeqia 134
                  g+++   +  +avP++s+ rv+G+lnl    +a   ++  + +l  L+ +a+qi 
  CTQ28557.1 202 RGWRQEEKIasIAVPVCSQQRVIGCLNLvyiaSAMTIEQAAQKHLPALQRVARQIE 257
                 34444444466*******99*******99888899999999************995 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.4   3.4e+03      36      47 ..       5      16 ..       4      18 .. 0.81
   2 !   16.5   0.0   5.9e-06    0.0059      20      57 ..      29      66 ..      20      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.4
                CHCHHHHHHHHH CS
        TrmB 36 rskvYevLrsLe 47
                +s +Y+++r L+
  CTQ28557.1  5 ESAAYKTVRGLS 16
                688999999996 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 5.9e-06
                HCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB 20 lgpatadeiaeelgvprskvYevLrsLedkGlVerekg 57
                 g at   +ae +g+ r++v + L+ L + G+V+r+++
  CTQ28557.1 29 DGGATPGLLAEFSGLHRTTVRRLLETLQEEGFVRRSRS 66
                578889999**************************986 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.9   2.9e+03      78      96 ..      79      97 ..      32     104 .. 0.63
   2 !   16.9   0.1   7.7e-06    0.0076      42     131 ..     162     258 ..     112     260 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.9
                HHHHHHHTTESEEEEEEEE CS
         GAF 78 rrdllenmgirsslvvPlv 96
                 +d ++  + +s+l+ Pl+
  CTQ28557.1 79 LSDGFRDEHWISALATPLL 97
                3344555666677777765 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 7.7e-06
                 C..EEEETTSHHHH.....HHHHHSSSEEESTGGTSTTHHTT.HHHHHHHHTTESEEEEEEEEETTEEEEEEEEEE.SSS....CSHHHHHHHHHHHHH CS
         GAF  42 w..lfmkngrgicg.....qvlatgqplvipdstpdprfaqy.nrrdllenmgirsslvvPlvndgelwGllvlhn.psp....pftreelellqvlad 127
                    + m       +     + la ++p +++ + +  r + y ++ +  ++ + ++s++vP+ ++++++G l l+   s+    +  +  l  lq +a+
  CTQ28557.1 162 DaiVSMLA-----ArpeaeYQLA-REPERLAAILARTRQNGYgENFRGWRQEEKIASIAVPVCSQQRVIGCLNLVYiASAmtieQAAQKHLPALQRVAR 254
                 23322222.....2343434444.5666666655666666667455555666667*********************84445555678888********* PP

                 HHHH CS
         GAF 128 qvav 131
                 q++ 
  CTQ28557.1 255 QIEA 258
                 *985 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.4e-05     0.014      14      50 ..      33      66 ..      17      73 .. 0.81
   2 ?   -3.2   0.0       9.2   9.2e+03      10      20 ..     234     243 ..     232     256 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
      HTH_29 14 tvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrs 50
                t+  +A++ gl+r+tv+r l+  +e+G     +r rs
  CTQ28557.1 33 TPGLLAEFSGLHRTTVRRLLETLQEEG---FVRRSRS 66
                5555899********************...7775555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9.2
      HTH_29  10 eGvstvsqiAk 20 
                  ++ t+ q+A+
  CTQ28557.1 234 SAM-TIEQAAQ 243
                 566.7888886 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.9e-05     0.038       4      44 ..      20      60 ..      17      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.9e-05
      HTH_11  4 qilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                 +l+lL++ +g  +   LAe  ++ r+tvrr +++L+e g+
  CTQ28557.1 20 LLLKLLNKFDGGATPGLLAEFSGLHRTTVRRLLETLQEEGF 60
                589999999999**************************995 PP

>> DUF4194  Domain of unknown function (DUF4194)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0037       3.7     123     151 ..      45      72 ..      37      79 .. 0.81
   2 ?    5.1   0.0     0.017        17     101     138 ..     160     197 ..     159     212 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0037
     DUF4194 123 kkrldaalrklkelgllrrldgd.eertry 151
                 +++++++l++l+e g++rr ++d + r  +
  CTQ28557.1  45 RTTVRRLLETLQEEGFVRRSRSDdSFR--L 72 
                 7899*****************964444..3 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.017
     DUF4194 101 sveeiveklesflpldrdeakfkkrldaalrklkelgl 138
                 +++ iv++l+++  ++ + a++ +rl a+l++ +++g+
  CTQ28557.1 160 ERDAIVSMLAARPEAEYQLAREPERLAAILARTRQNGY 197
                 5899*******************************987 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00049      0.48      23      46 ..      37      60 ..      17      63 .. 0.80
   2 ?    0.2   0.0      0.73   7.2e+02       2      16 ..     179     193 ..     178     208 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00049
      HTH_23 23 IAreLgvsrrTvyrwlkryreeGl 46
                 A+  g +r Tv+r l++ +eeG+
  CTQ28557.1 37 LAEFSGLHRTTVRRLLETLQEEGF 60
                57888**************99*97 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.73
      HTH_23   2 asereRlrillllae 16 
                 a+e eRl ++l+  +
  CTQ28557.1 179 AREPERLAAILARTR 193
                 678899999988764 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00014      0.14      11      49 ..      29      65 ..      20      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
      HTH_28 11 aGh.svreaArelgisrrtvyrWikryeegGiagLvprrr 49
                +G+ +   +A+  g++r+tv+r++  ++e+G+   v r+r
  CTQ28557.1 29 DGGaTPGLLAEFSGLHRTTVRRLLETLQEEGF---VRRSR 65
                46668888999******************998...77777 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00016      0.16      30      57 ..      37      64 ..      35      67 .. 0.91
   2 ?   -0.2   0.0      0.79   7.8e+02      33      44 ..     112     123 ..     110     130 .. 0.81
   3 ?   -2.7   0.0       4.9   4.9e+03      23      33 ..     245     255 ..     234     260 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
                HHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        GntR 30 LaaefgVsrttvReALrrLeaeglverr 57
                La+  g  rttvR+ L +L++eg v r 
  CTQ28557.1 37 LAEFSGLHRTTVRRLLETLQEEGFVRRS 64
                7899999******************986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.79
                 HHTS-HHHHHHH CS
        GntR  33 efgVsrttvReA 44 
                  ++V++++vRe 
  CTQ28557.1 112 TLDVDAMVVRET 123
                 6899******96 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4.9
                 B---HHHHHHH CS
        GntR  23 kLPsereLaae 33 
                  LP+ + +a +
  CTQ28557.1 245 HLPALQRVARQ 255
                 45555555544 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00036      0.36      17      58 ..      25      64 ..      10      67 .. 0.78
   2 ?   -1.2   0.0       2.7   2.7e+03      65      73 ..     176     184 ..     172     203 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00036
                HHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        Rrf2 17 LakeeeeepvsseeiaerqnispsylekilakLrkaglvksv 58
                L k +++  ++   +ae  +++++ ++++l++L+++g+v+  
  CTQ28557.1 25 LNKFDGG--ATPGLLAEFSGLHRTTVRRLLETLQEEGFVRRS 64
                4444443..577779************************865 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.7
                 EEESSHCCC CS
        Rrf2  65 yrLakppee 73 
                 y+La++pe+
  CTQ28557.1 176 YQLAREPER 184
                 778888775 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00026      0.26      22      58 ..      29      65 ..      10      67 .. 0.88
   2 ?   -2.7   0.0       6.5   6.5e+03      39      50 ..     240     251 ..     230     258 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00026
                CTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20 22 aegltaselaerldlskntlsyHLrvLeeagLvevvr 58
                ++g+t++ lae  +l+++t+++ L++L+e g+v++ r
  CTQ28557.1 29 DGGATPGLLAEFSGLHRTTVRRLLETLQEEGFVRRSR 65
                7899999999999*********************988 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.5
                 HHHHHHHHHHHH CS
      HTH_20  39 ntlsyHLrvLee 50 
                 + + +HL +L++
  CTQ28557.1 240 QAAQKHLPALQR 251
                 345566666665 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0002       0.2      31      54 ..      37      60 ..      14      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0002
      HTH_36 31 lakrlglsknTvsraikeLeqlGy 54
                la+ +gl++ Tv+r +  L + G+
  CTQ28557.1 37 LAEFSGLHRTTVRRLLETLQEEGF 60
                89*****************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2174.92
//
Query:       CTQ28558.1  [L=352]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-29  102.9   0.5    2.5e-29  102.5   0.5    1.2  1  Peripla_BP_2  Periplasmic binding protein
  ------ inclusion threshold ------
      0.027   13.9   0.0        1.5    8.2   0.0    2.2  2  KdpD          Osmosensitive K+ channel His kinase sensor doma


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.5   2.8e-33   2.5e-29       1     237 [.      45     298 ..      45     299 .. 0.90

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 2.8e-33
                   EEE-SHHHHHHHHHTT-GGGEEEB...-GGG--GGGGGGT....TS-BSBESSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS-EEE----T CS
  Peripla_BP_2   1 iaslspsvteillalGatdkvvgv...dtttsdpldadklee..aivevgadgeidvEklaalkPDlvilskglgltdedeellksgiptvivessn 92 
                   +++l   +  +l+ l a++ +vgv   +++  +p++a+ ++e  + ++ g  +++++E+l+al+P +v++ ++  +++ + +++++gip+v+   + 
    CTQ28558.1  45 VVVLQHQTLNLLVQLHAAEDIVGVlssWKKQLGPQFARFMPElgQLATPGDLTQVNIESLLALRPQVVFVANYA-PPAMIAQIQQAGIPVVAISLRH 140
                   688888888999999888777775444899999*****************************************.********************99 PP

                   TS...................HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT..-EEEEEEEETTE..EEEE-TTSTTTHHHHTS-- CS
  Peripla_BP_2  93 tg...................eslkeqiralgellgledeaeklvaeidsklaaaksaidse.kpkpvlvfggadeggyvvagsnsyigdlldalgi 169
                    +                   ++l e ir +ge+++++ eae+l++   ++  +a++ ++ +      + ++ a++      g + y g ++  +g+
    CTQ28558.1 141 DAageknkmnptmadeeqaynAGLMEGIRLIGEVVERQPEAEALIHYTFEARKQANAPVADIpP-NQRVRVYMANPD-LNTYGAGKYTGLMMAHAGA 235
                   999***********************************************************63.444444444442.34445566666777779** PP

                   EESTTT--STT-EEE-HHHHHHH--SEEEEEEHHHHT-S--HHHHT-SHHHHTSHHHHTT-EEEE-HH CS
  Peripla_BP_2 170 eniaaeskkseyeeisaEqilasdpdvifvsgraeadnktgleflkenpllaelpAvkngrVyaldss 237
                    n+aa+s  +++ ++s Eq+l+++p+vifv +r      +++++++++p ++++ Avk++rV+ ++++
    CTQ28558.1 236 LNVAAAS-VKGARQVSLEQVLEWNPQVIFVQDR----YPQVVKQIENDPQWQAIDAVKHHRVWLMPEY 298
                   *******.*************************....****************************987 PP

>> KdpD  Osmosensitive K+ channel His kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.005        44      69      92 ..      95     118 ..      66     129 .. 0.87
   2 ?    8.2   0.0   0.00017       1.5      70     111 ..     246     287 ..     225     293 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.005
        KdpD  69 eleeldldailarkpevvlvDela 92 
                  l++++++++la +p+vv+v ++a
  CTQ28558.1  95 DLTQVNIESLLALRPQVVFVANYA 118
                 57899***************8877 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00017
        KdpD  70 leeldldailarkpevvlvDelahtnapgsrhekryqdveel 111
                  ++++l+++l+ +p+v++v +   + +++ +++ ++q ++++
  CTQ28558.1 246 ARQVSLEQVLEWNPQVIFVQDRYPQVVKQIENDPQWQAIDAV 287
                 57899********************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 3019.29
//
Query:       CTQ28559.1  [L=335]
Description: putative ABC transporter permease protein HI_1471 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-86  290.8  34.1    1.3e-86  290.5  34.1    1.0  1  FecCD            FecCD transport family
  ------ inclusion threshold ------
      0.094   11.8   8.4       0.14   11.3   8.4    1.4  1  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.5  34.1   1.4e-90   1.3e-86       5     311 ..      21     326 ..      16     327 .. 0.97

  Alignments for each domain:
  == domain 1  score: 290.5 bits;  conditional E-value: 1.4e-90
       FecCD   5 llllslllgavkispsevfeallgka..dsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgslslf 101
                 + ++sl++g++++s+s v + l++    +    +iv+++rlprv++all+G+aL+++Ga lQ+v++NpL+dP+i+G+++g+a+g +la+ll+    ++ 
  CTQ28559.1  21 IAVASLCFGQYPLSLSAVGHTLVHLPpgEGVIGQIVWSVRLPRVVMALLAGGALGLCGATLQGVFQNPLVDPHIIGVTAGSAFGGTLAILLG---VGSL 116
                 67899*****************987788889999********************************************************96...7888 PP

       FecCD 102 alplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllll.neealesilfwllGslsgaswskvllllvllllllllllllark 199
                  +++  f+++l+al+l+++la  +++ s+l liL+Gi++s +++al+sl+++l+ +ee+l +i+fwllGs+++asw+kvll+++ l++++ +l+ l+ +
  CTQ28559.1 117 LMMASTFFFGLVALGLIYALAALQGRDSTLGLILSGIILSGFFAALVSLMQYLAdSEETLPNIVFWLLGSFATASWHKVLLMSLPLAVAAGALWKLRWR 215
                 8999**************************************************9999***************************************** PP

       FecCD 200 ldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgivt 298
                 ++llal ++ A+slGv+v+ +r  +l+++a+l+a+ va++G i+++GL+vPh+arllvgadhr+llp +++lGa+l+l++d lar+l+ ++e+p+gi+t
  CTQ28559.1 216 INLLALEERDARSLGVPVAALRRGVLVCCAVLVAAQVAVSGSIAWMGLVVPHLARLLVGADHRRLLPTAFWLGAALMLVVDDLARTLT-QAEIPIGIIT 313
                 ***************************************************************************************7.69******** PP

       FecCD 299 aliGapffiylll 311
                 al+Gap+f +ll+
  CTQ28559.1 314 ALLGAPLFTVLLV 326
                 ***********98 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   8.4   1.5e-05      0.14     231     310 ..     105     190 ..      51     264 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.5e-05
  ABC2_membrane_3 231 l..gipfg.nlglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglfp.ledlp....salkwifsiiPffapg 310
                         +i  g +++l++   ++fgl+++ l+y+l +l  + +t  ++++ +il  sgff++l++ ++ l+    +  +++f+++ +fa +
       CTQ28559.1 105 GtlAILLGvGSLLMMASTFFFGLVALGLIYALAALQGRDSTLGLILSGIIL--SGFFAALVSlMQYLAdseeTLPNIVFWLLGSFATA 190
                      244344444778888********************9998886665555554..88888887764444444434444566666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2491.15
//
Query:       CTQ28560.1  [L=249]
Description: Uncharacterized ABC transporter ATP-binding protein HI_1470 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.3e-22   79.1   0.0    6.7e-22   78.5   0.0    1.3  1  ABC_tran    ABC transporter
    1.1e-11   45.1   0.1    2.2e-07   31.0   0.0    2.1  2  AAA_21      AAA domain, putative AbiEii toxin, Type IV TA sys
      9e-06   25.3   0.2      0.034   13.6   0.2    2.1  2  SMC_N       RecF/RecN/SMC N terminal domain
      8e-05   22.3   0.0    0.00017   21.3   0.0    1.5  1  AAA_29      P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.015   15.0   0.1       0.98    9.1   0.0    2.0  2  AAA_15      AAA ATPase domain
       0.11   13.0   0.1       0.16   12.4   0.1    1.2  1  AAA_23      AAA domain
       0.17   10.7   0.2        6.9    5.3   0.0    2.1  2  ABC_ATPase  Predicted ATPase of the ABC class


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   2.6e-25   6.7e-22       4     136 ..      22     154 ..      19     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 2.6e-25
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHSTTG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklglk 95 
                 ++l +++ge++a++G nG GKStLl +l+g l p  Ge++++ g  l     +s+r  +++   +  l  + +  +       e+ +++e+al++lg+ 
  CTQ28560.1  22 LTLACRPGEIWAVLGANGRGKSTLLDTLTGVLPPLGGEMQCEgGVALVP---QSFRPAFRWRVSDVVLMGRARHVDLfaqpdeEDARRVEQALAQLGIA 117
                 78999**********************************9996666666...777777777777766666665444467788789999*********** PP

                 GTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  96 elkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  l+++        LSgGq+q v +aral+++++ +llDEp+
  CTQ28560.1 118 ALAEDDF----GALSGGQQQLVLIARALVSASQNILLDEPC 154
                 ***9999....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   4.2e-05      0.11       3      22 ..      33      52 ..      31      78 .. 0.87
   2 !   31.0   0.0   8.6e-11   2.2e-07     233     299 ..     123     187 ..      96     189 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.2e-05
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                ++ G+Ng GKS+LLd+l ++
  CTQ28560.1 33 AVLGANGRGKSTLLDTLTGV 52
                578**************876 PP

  == domain 2  score: 31.0 bits;  conditional E-value: 8.6e-11
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSp 299
                 ++  lS G+++l  ++ al +a +    +l+DEp + L+   +  +l+l+ ++++r    v++tTH+p
  CTQ28560.1 123 DFGALSGGQQQLVLIARALVSASQN---ILLDEPCSALDLGNQQVVLQLIgDLAHRQARTVLFTTHDP 187
                 57789*******9999999999977...**********************9999999**********9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0002       0.5      26      48 ..      31      53 ..      23      62 .. 0.87
   2 !   13.6   0.2   1.3e-05     0.034     136     201 ..     126     189 ..      85     201 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0002
                EEEEEESTTSSHHHHHHHHHHHC CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAilFvL 48
                + a++G+NG GKs lld +  vL
  CTQ28560.1 31 IWAVLGANGRGKSTLLDTLTGVL 53
                5689*************997665 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.3e-05
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislreem 201
                 +LSgG+++Lv +a       v+ +   llDe  +aLD  n + v +l+   ++++   ++ ++++ ++
  CTQ28560.1 126 ALSGGQQQLVLIARA----LVSASQNILLDEPCSALDLGNQQVVLQLIGdlAHRQARTVLFTTHDPNH 189
                 8*******9866543....334444479********************94344445566777776654 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   6.6e-08   0.00017      20      48 ..      27      55 ..      18      60 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 6.6e-08
      AAA_29 20 dlkgatlltGpsGsGKSTllDAiqalLvp 48
                ++ ++  + G++G GKSTllD ++ +L p
  CTQ28560.1 27 RPGEIWAVLGANGRGKSTLLDTLTGVLPP 55
                55568899****************99977 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.014        35      27      43 ..      33      49 ..      29      53 .. 0.86
   2 ?    9.1   0.0   0.00038      0.98     298     367 ..     128     188 ..     125     190 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.014
      AAA_15 27 vliGkNnsGKSsileal 43
                 + G+N+ GKS++l+ l
  CTQ28560.1 33 AVLGANGRGKSTLLDTL 49
                567***********987 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00038
      AAA_15 298 GsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHSph 367
                 + G+q+l+l++  +++a+++         +l++EP   L   +q+v+ +l+ +la      v++tTH p 
  CTQ28560.1 128 SGGQQQLVLIARALVSASQN---------ILLDEPCSALDLGNQQVVLQLIGDLAHRQARTVLFTTHDPN 188
                 569*****************.........*****************************99*******995 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   6.3e-05      0.16      24      43 ..      34      53 ..      24      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.3e-05
      AAA_23 24 ItGpNGaGKTTildAiklaL 43
                + G NG GK+T+ld ++ +L
  CTQ28560.1 34 VLGANGRGKSTLLDTLTGVL 53
                68************998766 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0027       6.9     244     265 ..      28      50 ..      23      54 .. 0.84
   2 ?    3.3   0.0     0.011        28     324     354 ..     128     158 ..     121     171 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0027
                 SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 244 kG.vtlIvGggfhGKsTLLeAle 265
                  G + ++ G +  GKsTLL  l 
  CTQ28560.1  28 PGeIWAVLGANGRGKSTLLDTLT 50 
                 455999*************9985 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.011
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HH CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtN 354
                 SG   q + i++al   ++ +L+DE  sA  
  CTQ28560.1 128 SGGQQQLVLIARALVSASQNILLDEPCSALD 158
                 899999999*****************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1972.99
//
Query:       CTQ28561.1  [L=247]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-42  145.0   0.1    3.3e-42  144.8   0.1    1.0  1  SBP_bac_11  Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.22   11.6   0.0    1.3  1  DUF1027     Protein of unknown function (DUF1027)


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8   0.1   3.7e-46   3.3e-42       1     229 [.       6     240 ..       6     241 .. 0.93

  Alignments for each domain:
  == domain 1  score: 144.8 bits;  conditional E-value: 3.7e-46
                 .EEEE-SSTHHHHHHHHHHHHHHH---EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGGGG-EEEEEEEEEEEESTT-TT---SHHHH CS
  SBP_bac_11   1 ltvaaagslaaalrelaaaFeahtgvkvevsaggsgklarqiadgarpDvwipassawlellaaaglvqaesavplassplviavpkgnpkkikgwadL 99 
                 lt++aagsl+ a+  l+a F++htg+ v+ ++g++g l+++i++g+++ v+++a++a++++l +agl+q  + + +as++l + ++++  ++  +w +L
  CTQ28561.1   6 LTLLAAGSLRSAFLPLVAHFRQHTGLAVDAQFGPAGLLRERIEAGSPCAVFASANAAHPQALLQAGLAQ--ECQGFASNQLMLTARRSPDNDGLDWLAL 102
                 799******************************************************************..****************998877777777 PP

                 HH.SS--EEEE--T-TTTTHH.HHHHGGG--..HHHHHHHHHTEEEEESSHHHHHHH..........HHTTT-SEEEEEHHHHH..HSTTSSEEEE--T CS
  SBP_bac_11 100 lk.pglklavadPttspsGlaalalleaaga..qellkalekkvvklgessrqllta..........veageadagivyeseakaaengdkleavylpe 185
                 l    l+la+++P  +psG+++++l+++ +a  ++l +a+++++++l+++ r+ l+           ++++ ad++i+y +   a +  d+l+ +++p+
  CTQ28561.1 103 LStTRLRLATSTPGCDPSGDYTWQLFARIEAryPGLGNAMAGRAQQLVGG-RDSLSVppgeiagawlIRQNLADLFIGYAHYGPALATCDDLRTLTIPA 200
                 773678***********************999999**********99886.55555556666666999***************9999************ PP

                 TT--...EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT- CS
  SBP_bac_11 186 glnldpldypaavlkkaakreaAraFlafLrspeaqailrkyGf 229
                  +n+ + dy++a l+ +    aA a+++f++++ +q  lr++Gf
  CTQ28561.1 201 PWNI-RCDYQLARLRAD---PAALALYRFILGDVGQGYLRQAGF 240
                 ***8.9*********88...7**********************9 PP

>> DUF1027  Protein of unknown function (DUF1027)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05      0.22      29      51 ..     219     241 ..     207     246 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
     DUF1027  29 ildkydYivGDigyekLRLkGFy 51 
                 +l+ y +i+GD+g++ LR  GF+
  CTQ28561.1 219 ALALYRFILGDVGQGYLRQAGFM 241
                 5788******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1877.50
//
Query:       CTQ28562.1  [L=278]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-12   46.0   0.0    8.8e-12   45.1   0.0    1.4  1  Shikimate_dh_N   Shikimate dehydrogenase substrate binding do
      2e-06   27.3   0.4    3.7e-06   26.5   0.4    1.4  1  ThiF             ThiF family
     0.0025   17.5   0.1     0.0036   16.9   0.1    1.3  1  ApbA             Ketopantoate reductase PanE/ApbA
      0.004   17.2   0.0     0.0076   16.3   0.0    1.4  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
     0.0068   16.6   0.2      0.013   15.7   0.2    1.5  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.013   15.4   0.0       0.02   14.8   0.0    1.3  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.027   14.1   2.8      0.038   13.6   2.3    1.4  1  DAO              FAD dependent oxidoreductase
      0.029   13.7   0.0      0.043   13.2   0.0    1.2  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.052   12.8   0.0      0.077   12.2   0.0    1.2  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      0.058   13.5   0.0       0.78    9.8   0.0    2.0  2  DUF2656          Protein of unknown function (DUF2656)
       0.06   12.8   0.0      0.089   12.2   0.0    1.3  1  adh_short        short chain dehydrogenase
      0.065   12.5   1.1       0.11   11.7   0.8    1.5  2  FAD_binding_3    FAD binding domain
      0.081   12.9   0.0       0.19   11.7   0.0    1.5  2  Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
       0.14   12.4   0.1       0.33   11.2   0.1    1.7  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   6.9e-15   8.8e-12       3      83 .]      14      95 ..      13      95 .. 0.97

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 6.9e-15
                    ESS-TT-SHHHHHHHHHHHCTSSEEEEEEE-SCCTHHHHHHHHHH.TTESEEEE-TTSCCHHHGGSSEE-HHHHHHT--SEE CS
  Shikimate_dh_N  3 GnpikhSlSPaihnaafkalglngsyeafeveedelekaveelra.lglaGlnvTiPfKeaviplldelseeAkaigAvNti 83
                    G+p +  + P i+n +f +++++++ +++ v +++  +++  l +  ++ G+ vT+P+K a ++l+ +ls++A+ +gA+N i
      CTQ28562.1 14 GYPTASFKAPMIYNPWFVDQQVDVKVVPMGVRPEDYAAFIPPLFTmTNIIGALVTMPHKIATCDLVQRLSPTAAIAGACNAI 95
                    89999999*********************************99998**********************************87 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.4   2.9e-09   3.7e-06      18      49 ..     126     157 ..     110     159 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 2.9e-09
                 TSEEEEE--SHHHHHHHHHHHHHTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  18 dskvllvGaGglGsellknLalsGvgkltlvD 49 
                  ++ l+vG Gg+Gs ++  La++Gv+ ltl D
  CTQ28562.1 126 GTRALVVGSGGVGSAIAASLAAAGVSALTLYD 157
                 5899***************************9 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   2.8e-06    0.0036       2      36 ..     130     165 ..     129     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.8e-06
                 EEES-SHHHHHHHHHHHHHTHC.EEEE-SCHHHHHH CS
        ApbA   2 ailGaGaiGsllaakLakagad.vtlilrsrrleal 36 
                 +++G+G++Gs +aa+La+ag    tl++ ++++++ 
  CTQ28562.1 130 LVVGSGGVGSAIAASLAAAGVSaLTLYDTRPEVAHA 165
                 69****************998857777776677664 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.9e-06    0.0076      11      66 ..     125     179 ..     117     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.9e-06
                   TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEG CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkl 66 
                   ++ ++l++G G +++ +a  L+a+gv +++      e a++la +l+++ +  l++
    CTQ28562.1 125 QGTRALVVGSGGVGSAIAASLAAAGVSALTLYDTRPEVAHALAGRLHQH-YPQLDI 179
                   6789******************************************877.555555 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2     1e-05     0.013       1      31 [.     131     162 ..     131     183 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1e-05
                    EE--SHHHHHHHHHHHCCTE.EEEEE-SSSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagf.dvlllekrdrl 31 
                    +vG+G  G+++A+ La ag+   +l+++r+ +
     CTQ28562.1 131 VVGSGGVGSAIAASLAAAGVsALTLYDTRPEV 162
                    8*******************56*******987 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.6e-05      0.02       4      46 ..     131     174 ..     128     187 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
                 EE--SCCHHHHHHHHHHTT-E.EEEE-S-HHHHHHHHHHHHHHH CS
     3HCDH_N   4 viGaGtmGagiaavfasagle.Vvlvdiseealekalekieksl 46 
                 v+G+G +G+ iaa +a+ag++  +l+d+++e +++ + ++++ +
  CTQ28562.1 131 VVGSGGVGSAIAASLAAAGVSaLTLYDTRPEVAHALAGRLHQHY 174
                 9******************963799******9999988888755 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.3   2.9e-05     0.038       2      39 ..     129     165 ..     128     193 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.9e-05
                 EEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTSSGGGS CS
         DAO   2 vviiGGGiiGlstAyeLarrg...VtllekgdiagsgaSgr 39 
                  +++G+G +G+++A  La++g    tl++ +++++ +   +
  CTQ28562.1 129 ALVVGSGGVGSAIAASLAAAGvsaLTLYDTRPEVA-H---A 165
                 58******************999********9999.3...3 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.4e-05     0.043      30      73 ..     120     164 ..     105     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.4e-05
                   SBS-GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHH CS
  2-Hacid_dh_C  30 lgkelsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkee 73 
                   +g + +g +  ++G G +G+a+a  l+a g+  ++ yd++++  +
    CTQ28562.1 120 KGFNPQGTRALVVGSGGVGSAIAASLAAAGVsALTLYDTRPEVAH 164
                   566778999*********************966778888877555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     6e-05     0.077     142     183 ..     123     168 ..      90     183 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6e-05
                  T...SEEEEES-SHHHHHHHHHHHHHT-E.EEEEESSSSSSTTS-H CS
                  x...xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 142 p...krivvvGgGyiGvElAaalaklgke.vtlveardrllraldk 183
                  +    r++vvG+G +G+ +Aa la +g+   tl + r+++  al  
   CTQ28562.1 123 NpqgTRALVVGSGGVGSAIAASLAAAGVSaLTLYDTRPEVAHALAG 168
                  1455789*********************989999999999844443 PP

>> DUF2656  Protein of unknown function (DUF2656)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.22   2.8e+02      14     115 ..      39     137 ..      32     146 .. 0.72
   2 ?    9.8   0.0   0.00061      0.78      94     131 ..     199     236 ..     155     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.22
     DUF2656  14 avpalsreefaevfadglsasseiqcreledhPhWlveilfsesklspeqvgeecakalaqkRkelqkgeeaapdiLilgglktsparssapdaLqeGe 112
                 +vp+  r e  ++f+  l ++++i  + +   Ph +    + +   + ++++ +c  a++++     +g+  + + ++lg +++   +++   aL  G+
  CTQ28562.1  39 VVPMGVRPEDYAAFIPPLFTMTNIIGALV-TMPHKIATCDLVQRLSPTAAIAGAC-NAIRREADGSLSGDMFDGEGFVLGLRRKGF-NPQGTRALVVGS 134
                 55554555556678888888899999988.9999999998888666666777777.567777777779999999999999887764.334444677777 PP

     DUF2656 113 WGV 115
                  GV
  CTQ28562.1 135 GGV 137
                 776 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00061
     DUF2656  94 glktsparssapdaLqeGeWGVdvVEtasaekfLkaig 131
                 g+k s++ + + d L +G W  +vV t++   +L+a +
  CTQ28562.1 199 GMKASDPLPLDVDRLAPGAWVGEVVMTQEYTPLLRAAQ 236
                 799**************************999999866 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.9e-05     0.089       3      53 ..     129     181 ..     127     203 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.9e-05
                 EEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHT..TSEEEE CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkee..gakala 53 
                 +lv+G + G+G aia  la++G++ +  +d ++e ++++a  l+++  + +++ 
  CTQ28562.1 129 ALVVGSG-GVGSAIAASLAAAGVSALTlYDTRPEVAHALAGRLHQHypQLDITL 181
                 6788765.***************999989*****99999999998644334444 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.8   8.9e-05      0.11       2      46 ..     127     171 ..     126     174 .. 0.82
   2 ?   -2.7   0.0         2   2.6e+03     104     129 ..     225     249 ..     204     251 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.9e-05
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEE CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradgln 46 
                    t  l+VG+G +G   a  L+ aGv+ + +   + +v +  a+ l+
     CTQ28562.1 127 TRALVVGSGGVGSAIAASLAAAGVSALTLYDTRPEVAHALAGRLH 171
                    5789*********************98887777777666666666 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2
                    HHHHHHHHHHHHHHHTEEETCSEEEE CS
  FAD_binding_3 104 qteleriLvehaeerglqvrfkteve 129
                     +e +++L+++ ++r + ++++t+++
     CTQ28562.1 225 TQEYTPLLRAA-QARQCHIQRGTDML 249
                    45666777666.99999999999975 PP

>> Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.6   7.2e+03      23      40 ..      69      86 ..      60      94 .. 0.73
   2 ?   11.7   0.0   0.00015      0.19       7      79 ..     109     185 ..     107     196 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.6
  Glyco_tran_WecB 23 lpervagidlieellera 40
                     +p+++a +dl+++l   a
       CTQ28562.1 69 MPHKIATCDLVQRLSPTA 86
                     577888888888876554 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00015
  Glyco_tran_WecB   7 DGigvvlaarll...lgkplpervagi.dlieelleraeee.glrvfllGgkpevlekaaerlrekypglriagthdg 79 
                      DG g vl +r +   + + ++  v g+  +  ++ + ++++    + l+ ++pev+ ++a rl ++yp+l+i  +++ 
       CTQ28562.1 109 DGEGFVLGLR-RkgfNPQGTRALVVGSgGVGSAIAASLAAAgVSALTLYDTRPEVAHALAGRLHQHYPQLDITLMQPD 185
                      6777777777.424322333445555532222233333333345789999**********************998876 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00026      0.33       2      44 ..     130     170 ..     129     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
                      EEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH CS
  Sacchrp_dh_NADP   2 liiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka 44 
                      l++G+G+vG+a+a  la+ +     +t+ d   e ++ala  +
       CTQ28562.1 130 LVVGSGGVGSAIAASLAAAGVS--ALTLYDTRPEVAHALAGRL 170
                      89*****************987..9999999999988887554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2094.18
//
Query:       CTQ28563.1  [L=440]
Description: D-galactonate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-56  191.1  32.2    2.5e-56  191.1  32.2    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.17   10.7  33.5       0.31    9.8  11.7    2.9  3  Sugar_tr  Sugar (and other) transporter
       0.37   10.5   5.5      0.057   13.2   1.0    1.9  2  DUF3464   Photosynthesis affected mutant 68


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.1  32.2   4.3e-60   2.5e-56       1     353 []      31     395 ..      31     395 .. 0.86
   2 !    5.7   9.8   0.00098       5.9     124     174 ..     381     431 ..     381     439 .. 0.71

  Alignments for each domain:
  == domain 1  score: 191.1 bits;  conditional E-value: 4.3e-60
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l++++++++l+r++lg+a+p  l+ +lgi+p+ +g+l++++a+++a+a++p+G + drfG + +++l+l+l++l++l+  +a +l +ll++r+  G+ +
  CTQ28563.1  31 LAIGTMINYLDRTVLGIAAP-KLTAELGIDPAIMGILFSAFAWTYALAQIPGGLFLDRFGNKVTYFLSLTLWSLFTLFHGMAVGLKTLLLCRFGLGISE 128
                 689*****************.******************************************************555558899899************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 +  fp+   ++++wfp++er++a++++++g  lG ++ ++l  ++++ +gWr++f+ +++v++l++++++   ++ep+e +r s++e+e          
  CTQ28563.1 129 APCFPVNSRVVSAWFPQQERAKATAVYTVGEYLGLACFAPLLFWIMDGFGWRVLFVSVGAVGILFALVWWRC-YREPHEDPRLSQQEREhienggglsa 226
                 ****************************************************************99974444.68888888888888888*99999998 PP

       MFS_1 189 ..kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr.........lgrrrr 276
                    +++ +++    ++ll+++++  + i+ + + +++ ++lt++p++l + ++++ +l +g+++ l+++++a++ +++g+lsd+         lgr+  
  CTQ28563.1 227 ptDQQVAFSWPL-VRQLLSKRQIIGASIGQFAGNTVLVFFLTWFPTWLATERHMP-WLKVGFFSILPFVAAAGGVMFGGWLSDKllkatgsanLGRK-- 321
                 888888888888.99999999887677777777778888****************.****************************8777555444443.. PP

       MFS_1 277 lllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                   l ++++ll+a +++ +++ +s ++++lv+ ++ fg+g+ +++ ++l+sd ap+   g   glfn++ +l+g+l p
  CTQ28563.1 322 --LPIVAGLLMASCIITANWLESDLAVILVMSFAFFGQGM-VGLGWTLISDIAPKGLGGLTGGLFNFCANLAGILTP 395
                 ..33333333344444444444445666666666668887.69*******************************987 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.00098
       MFS_1 124 gllsagfslGailgpllggllasslg..Wravfyilaivsllafvlfllllpe 174
                 gl++ +++l+ il+pl+ g++++ +g  + a+ yi ++++l +  +++l+++ 
  CTQ28563.1 381 GLFNFCANLAGILTPLVIGFIVAGFGnfFYALIYIGGAALLGV--VAYLFILG 431
                 7899******************888875555555555555544..45666654 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   9.3   6.9e-05      0.41     253     437 ..      23     201 ..       7     208 .. 0.69
   2 ?   -1.2   0.8      0.12   6.9e+02      51      73 ..     286     309 ..     253     339 .. 0.71
   3 ?    9.8  11.7   5.2e-05      0.31     336     437 ..     334     429 ..     312     435 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 6.9e-05
                 .HHHHHHHHHHHHHHTT..HHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHH...HHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS. CS
    Sugar_tr 253 qrlligvvlqifqqltG..inaimyysptifenlglsksllvtiivgvvnfvatfvai...flvdrfGRRtllllGaagmaicfvilgivalllvaksk 346
                 +r+ i ++l+i++  ++    ++ + +p+++ +lg+++  ++ i++++  ++  ++ i   ++ drfG + +++l+++  ++++++ g  ++++ ++  
  CTQ28563.1  23 RRIGILALLAIGTMINYldRTVLGIAAPKLTAELGIDPA-IMGILFSAFAWTYALAQIpggLFLDRFGNKVTYFLSLTLWSLFTLFHG--MAVGLKT-- 116
                 444444444444443331145666789999999999999.777777776666666555555899999999999999999999999999..8888888.. PP

                 ..CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS CS
    Sugar_tr 347 aasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffv 437
                       + ++ + + + ++   pv   +vs  fpq+ R+ka+a+ ++   l     + l  +i++  g  + f+  +++ +lf+++ + ++
  CTQ28563.1 117 ------LLLCRFGLGISEAPCFPVNSRVVSAWFPQQERAKATAVYTVGEYLGLACFAPLLFWIMDGFGWRVLFVSVGAVGILFALVWWRCY 201
                 ......2233333333344444666668999999999999999999998887666655555555555547778888888888887776655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.12
                 HHHTHHHHHHHHHH.HHHHHHHHT CS
    Sugar_tr  51 ivsiflvGaiiGsl.fagllgdrf 73 
                 ++si+ ++a++G++ f+g+l+d++
  CTQ28563.1 286 FFSILPFVAAAGGVmFGGWLSDKL 309
                 556666666666651456777765 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 5.2e-05
                 ..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHH CS
    Sugar_tr 336 ivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvf 434
                 i+++ + +++     +a+++++ f a+f+ g+ ++ w l+s+++p+++ +++  +  ++ +la +l+ l++ +i+   g++++ l++ g a+l  ++ +
  CTQ28563.1 334 IITANWLESD-----LAVILVMSF-AFFGQGMVGLGWTLISDIAPKGLGGLTGGLFNFCANLAGILTPLVIGFIVAGFGNFFYALIYIGGAALLGVVAY 426
                 2233344432.....566666666.88899******************************************************************999 PP

                 HHS CS
    Sugar_tr 435 ffv 437
                 +f+
  CTQ28563.1 427 LFI 429
                 997 PP

>> DUF3464  Photosynthesis affected mutant 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2      0.81   4.8e+03      62     115 ..     246     302 ..     228     306 .. 0.58
   2 ?   13.2   1.0   9.5e-06     0.057      79     118 ..     329     368 ..     321     392 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.81
     DUF3464  62 RvalfsGiPlalGlatfvvfylivs...kelvdlptwvvllvslvlFglgvlGlsYG 115
                 R ++ + i  ++G +++v+f         +  ++p + v + s++ F +++ G+ +G
  CTQ28563.1 246 RQIIGASIGQFAGNTVLVFFLTWFPtwlATERHMPWLKVGFFSILPFVAAAGGVMFG 302
                 555555555555555555444322200022334666667777777777777777765 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 9.5e-06
     DUF3464  79 vvfylivskelvdlptwvvllvslvlFglgvlGlsYGvlS 118
                  +  +i++ ++++   +v+l++s+++Fg g++Gl + ++S
  CTQ28563.1 329 LMASCIITANWLESDLAVILVMSFAFFGQGMVGLGWTLIS 368
                 4456789999************************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3230.48
//
Query:       CTQ28564.1  [L=617]
Description: AP endonuclease, family 2/4-hydroxyphenylpyruvate dioxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-34  119.6   0.1    2.5e-34  118.5   0.1    1.6  2  AP_endonuc_2  Xylose isomerase-like TIM barrel
    2.7e-28   98.9   0.0    2.2e-27   96.0   0.0    2.1  2  Glyoxalase_5  Hydroxyphenylpyruvate dioxygenase, HPPD, N-term
    5.7e-07   29.8   0.1      0.013   15.8   0.0    2.7  2  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
    1.1e-06   28.8   0.0    3.7e-06   27.2   0.0    1.8  2  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   0.1   5.7e-38   2.5e-34       2     210 .]      19     218 ..      18     218 .. 0.94
   2 ?   -3.9   0.0       1.7   7.8e+03      26      43 ..     299     316 ..     285     331 .. 0.68

  Alignments for each domain:
  == domain 1  score: 118.5 bits;  conditional E-value: 5.7e-38
                   HHHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTT CS
  AP_endonuc_2   2 aaaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlhpGtagagp 98 
                    a+a+aG++gvE+f  dl  ++     + +e+r+++++lgl+i+++++f +f++    + +a+     ++++r   l+++LG+++l l++       
    CTQ28564.1  19 HAIAAAGYQGVEIFENDLLYYT----GTPAEIRQLAADLGLKITLFQPFRDFEGASRAQFAAN----MARARRKFALMRELGCETLLLCSN-----V 102
                   689******************9....68***************************99999999....**********************55.....5 PP

                   TSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGGEEEEEE.EESS.. CS
  AP_endonuc_2  99 kgseeeawerlaeslneladyaekegvklalEtlagsgvelgdeelarlldavdspnvgvclDtgHlliaeedvddalraladrikhvHikDakg.. 193
                     +  ++ e+ +++l++la  ae+eg+ +++E la+ ++ ++++++++ +++vdsp +g++lD +H+l++++ +d++     ++i +v+++Da    
    CTQ28564.1 103 QPDCSADSELQVADLRALATLAEEEGIAIGYEALAWGTHVNRWQQAWERVRRVDSPALGLVLDSFHILARGDTLDALPSVPVEKITFVQLADAPYmk 199
                   5555566777899*********************************************************88888888888999************* PP

                   ..TTTTSSTTEESTTSSSS CS
  AP_endonuc_2 194 ..dlgagrdrhvpigeGei 210
                      l ++r+ ++ +g+Ge+
    CTQ28564.1 200 mdLLEWSRHFRCFPGQGEL 218
                   *****************85 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.7
                   HHHHHHHHHHHHHHTTSE CS
  AP_endonuc_2  26 sdeelrelrkaldelglr 43 
                   s +e+++l + l++lg++
    CTQ28564.1 299 SAAEAQRLGQHLQALGFQ 316
                   667778888888888776 PP

>> Glyoxalase_5  Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   4.8e-31   2.2e-27       8     138 ..     289     418 ..     284     419 .. 0.94
   2 ?   -0.0   0.0       0.2   9.1e+02      48      93 ..     482     530 ..     476     544 .. 0.71

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 4.8e-31
  Glyoxalase_5   8 dGfefvefaape..aealeelfeklGftavarhrskdvtlyrqGginfilneepdsaaakfarehGpsacalafrvkdakkayeralekGakpveke 102
                   +G+ef+efaa +  a+ l + +++lGf+    hrs++vtl+r+Gg  +++n++p+s a +f + hG s ca+a+rv+++++   ra + G  + + +
    CTQ28564.1 289 HGLEFIEFAASAaeAQRLGQHLQALGFQYEGSHRSRQVTLWRNGGARIVINHQPHSWADHFYQRHGVSLCAMALRVEHSASLVARARALGYATWQGD 385
                   69******998743689******************************************************************************** PP

  Glyoxalase_5 103 tgvmelkiPaikGiGgsllylvdryeekksiydidf 138
                   +g++e  iPai    gsl+yl+d    +++iy+ df
    CTQ28564.1 386 AGPNETPIPAICAPDGSLIYLIDA---GEAIYERDF 418
                   **********************96...567999998 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.2
  Glyoxalase_5  48 qGginfilneepd...saaakfarehGpsacalafrvkdakkayerale 93 
                   qG+i + ln  ++     a + a   G++    af  +d  +a +++ e
    CTQ28564.1 482 QGDIRLALNISQSratQIARSVACYQGAGLQHAAFACRDLPAACDQLAE 530
                   9999999997543111345566677888888889998888887777655 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   8.8e-05      0.39      29      97 ..     317     385 ..     296     393 .. 0.77
   2 !   15.8   0.0   2.8e-06     0.013      11      88 ..     446     530 ..     435     532 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.8e-05
                   -E.EETTTTEEEEEEEETTEEEEEEEESS.TT-THHHTS-EEEEEEEEES-HHHHHHHHCTTTEEEEEEE CS
  Glyoxalase_4  29 yrdepqevdlafallgsgsvqieLieple.gpeflaehgeglhhlaywvddldaavarleeqGfevvqkg 97 
                   y+   ++ ++ ++++g++ + i   +p++  + f+++hg  l   a++v+     var+++ G++  q +
    CTQ28564.1 317 YEGSHRSRQVTLWRNGGARIVIN-HQPHSwADHFYQRHGVSLCAMALRVEHSASLVARARALGYATWQGD 385
                   33344456678899999888888.7888835589999****************************87754 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.8e-06
                   HHHHHHHHH.TT-EES..S--E.EETTTTEEEEEEEETTEEEEEEEESSTT-THHH.....TS-EEEEEEEEES-HHHHHHHHCT CS
  Glyoxalase_4  11 eaavarfsallGvgpw..qryrdepqevdlafallgsgsvqieLieplegpeflae.....hgeglhhlaywvddldaavarlee 88 
                   +  v +f +++G+  +  q+ +d+   v+   +++ +g++++ L    + ++ +a+     +g+gl+h a++++dl aa+++l+e
    CTQ28564.1 446 DNWVMFFRTVFGFSLEheQTLPDPYGLVRSLAVRSPQGDIRLALNISQSRATQIARsvacyQGAGLQHAAFACRDLPAACDQLAE 530
                   5566788999998755115555555568888899999988888866666666666668889*******************99875 PP

>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.86   3.9e+03      52      99 ..     334     379 ..     307     384 .. 0.66
   2 !   27.2   0.0   8.2e-10   3.7e-06       2     123 ..     433     572 ..     432     575 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.86
                 EEEEEEECCTTSCTHHCCBSC..TSEEEEEEEEEHCHHHHHHHHHHHTTG CS
  Glyoxalase  52 ielvlneapsgaakhvkkiee..tvhhvafialdvedvgkaldrlkeagv 99 
                 + +v+n+ p++ a h+       ++  +  +al ve  +  + r+++ g+
  CTQ28564.1 334 ARIVINHQPHSWADHF----YqrHGVSLCAMALRVEHSASLVARARALGY 379
                 5566666666666666....322344455567777777777777777765 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 8.2e-10
                 EEEEE..EEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETTTSEEEEEEEECCTTSCTHHCCBS.CTSEEEEEEEEEHCHHHHHHHHHHHT CS
  Glyoxalase   2 idhva..llvgdleksldFYtkvLGfklvkktdnteeteglriaffhaggghielvlneapsgaakhvkkie.etvhhvafialdvedvgkaldrlkea 97 
                 idh+a  + ++  + ++ F++ v+Gf l  +     +++ +r+ ++++ +g i l+ln + s a +  +++   +++++++ a++  d+ +a+d+l+e 
  CTQ28564.1 433 IDHLAlgMEADSRDNWVMFFRTVFGFSLEHEQTLPDPYGLVRSLAVRSPQGDIRLALNISQSRATQIARSVAcYQGAGLQHAAFACRDLPAACDQLAEV 531
                 66666555566678899****************99999*****************************95555449************************ PP

                 TGEEEEEEECHHCTEEEEE...............EEEETTS CS
  Glyoxalase  98 gvkvvaepgrhyfgalysf...............yfrDpdG 123
                      ++p  +y + l  f               y rDp G
  CTQ28564.1 532 ARHTLPIPANYYDDLLARFggeldvgqlqrqqllYDRDPQG 572
                 *999****99999999999********************88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4364.23
//
Query:       CTQ28565.1  [L=212]
Description: putative bacterial regulatory protein, Tet [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-32  109.9   0.0    1.2e-31  109.2   0.0    1.4  1  TetR_C_29       Tetracyclin repressor-like, C-terminal domain
    2.2e-13   49.8   0.5    4.4e-13   48.8   0.5    1.5  1  TetR_N          Bacterial regulatory proteins, tetR family
    3.2e-05   24.2   0.5    0.00035   20.8   0.0    2.5  2  TetR_C_24       Tetracyclin repressor-like, C-terminal domain
     0.0025   18.0   0.0     0.0037   17.4   0.0    1.3  1  TetR_C_4        YsiA-like protein, C-terminal region
  ------ inclusion threshold ------
      0.018   14.4   0.0      0.034   13.5   0.0    1.3  1  GCV_T           Aminomethyltransferase folate-binding domain
      0.024   15.3   0.0      0.046   14.4   0.0    1.5  1  Cytochrom_B562  Cytochrome b562
       0.14   12.0   0.0       0.29   10.9   0.0    1.5  2  dCache_1        Cache domain


Domain annotation for each model (and alignments):
>> TetR_C_29  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.2   0.0   4.8e-35   1.2e-31       1     117 [.      84     200 ..      84     206 .. 0.96

  Alignments for each domain:
  == domain 1  score: 109.2 bits;  conditional E-value: 4.8e-35
                 HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHS-TT--TTS--SS-.THHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHHHHHHHHHTHHHHHHHH- CS
   TetR_C_29   1 PvealrrlveftfdyhaanpefvrLvsiEnlhrgrhlkksesirelnspliekleeilerGqaagvFrpgvdaldlyllisslcffrvsnrhtlsalfg 99 
                 Pveal rlv++ ++yha++ +++r +++En++rg+ lk+s +++ ln+++++ le+il rGq++gvF++g+da+d++ liss++f++vsn +t+s+l+ 
  CTQ28565.1  84 PVEALVRLVRWSVRYHATHADYMRVICMENMQRGKWLKSSGELKPLNRTALSILEDILLRGQQQGVFQAGLDARDVHRLISSFSFYQVSNFYTFSSLYL 182
                 9*************************************************************************************************9 PP

                 --TTSHHHHHHHHHHHHH CS
   TetR_C_29 100 rdlsspealerrralivd 117
                  d   +   e++ a+ +d
  CTQ28565.1 183 DDPLPAIDDEAMVAHHCD 200
                 999888888888888777 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.5   1.7e-16   4.4e-13       1      47 []      16      62 ..      16      62 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 1.7e-16
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                I +aA ++fae+G +++ +++IA +A+++k+ + +yF+sKe+L++++
  CTQ28565.1 16 IFSAAIAVFAEHGLSGARMEQIATEAQTTKRMVVYYFKSKEQLYQEV 62
                789*****************************************997 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.4      0.41     1e+03      20      54 ..      42      76 ..      31      78 .. 0.73
   2 !   20.8   0.0   1.4e-07   0.00035       3      81 ..      83     164 ..      81     168 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.41
                HHTHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHH CS
   TetR_C_24 20 aeereeaavllrelraLspehreeiralrreyerl 54
                 + +++++ ++++ ++L +e ++++ a+ re e++
  CTQ28565.1 42 QTTKRMVVYYFKSKEQLYQEVLQHVYARIRETEQQ 76
                45566777788888888888888888888888776 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.4e-07
                 SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-H..HHHHHHHHHHHHHHHHHHHHHHHHHHTTSB.-SS-HHHHHHHHH CS
   TetR_C_24   3 spaerLralvrahveviaeereeaavllrelraLsp..ehreeiralrreyerllrdlieeGvaagef.edldpklaalail 81 
                 +p+e L +lvr  v+++a++ ++++v+  e  +  +  ++  e++ l r   ++l+d++ +G+++g+f + ld++ + ++i 
  CTQ28565.1  83 PPVEALVRLVRWSVRYHATHADYMRVICMENMQRGKwlKSSGELKPLNRTALSILEDILLRGQQQGVFqAGLDARDVHRLIS 164
                 89*************************99966655533677899************************9999*999998886 PP

>> TetR_C_4  YsiA-like protein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.4e-06    0.0037      22      99 ..      84     163 ..      59     176 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.4e-06
                 HHHHHHHHHHHHHHHHHC-HHHHHHHHTTCCGSSHHHHH..HHHHHHHHHHHHHHHHHHHHHHTTSC-TT--HHHHHHHH CS
    TetR_C_4  22 aeeklkllvekhfsqlsadkelaivtqlelrqsnlelrl..kinevlkgyltlldeiiaeGkekGefkeeldvrlarqli 99 
                 + e l +lv+  ++  +++ +   v  +e  q  + l+    ++ + +  l++l++i+  G+++G f+++ld+r +++li
  CTQ28565.1  84 PVEALVRLVRWSVRYHATHADYMRVICMENMQRGKWLKSsgELKPLNRTALSILEDILLRGQQQGVFQAGLDARDVHRLI 163
                 566677777777777777777666777776666666665224667778889************************99998 PP

>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.3e-05     0.034     201     239 ..     131     169 ..     123     171 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
       GCV_T 201 eeaeelweaLleagkeegvkpaGlgArdtlRlEaglrly 239
                   a  + e +l  g+++gv +aGl Ard+ Rl +++ +y
  CTQ28565.1 131 RTALSILEDILLRGQQQGVFQAGLDARDVHRLISSFSFY 169
                 6788999*************************9998887 PP

>> Cytochrom_B562  Cytochrome b562
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.8e-05     0.046      30      88 ..      32      90 ..      18     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.8e-05
  Cytochrom_B562 30 kelraaaedakeatpsklekdseeqkdYqeGldklidqldkaealakagkleeakaalk 88
                    ++++++a++a++++   +   +++++ Yqe l+++ + + ++e+++  +++  ++a+++
      CTQ28565.1 32 ARMEQIATEAQTTKRMVVYYFKSKEQLYQEVLQHVYARIRETEQQLGLENVPPVEALVR 90
                    6899*******999978888999***********************9999998888776 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.94   2.4e+03      42      66 ..      48      65 ..      32      83 .. 0.50
   2 ?   10.9   0.0   0.00011      0.29     133     176 ..     130     172 ..      96     179 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.94
    dCache_1 42 lqdlleepnraneasreslqallks 66
                ++ ++++ +       +  q+ l++
  CTQ28565.1 48 VVYYFKSKE-------QLYQEVLQH 65
                555555433.......333333333 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00011
    dCache_1 133 gkpvitiavpiyddsgkfiGvlaadldldnlqdllsniklgetg 176
                 +++ ++i + i  + g+ +Gv++a ld+ ++ +l+s++++++ +
  CTQ28565.1 130 NRTALSILEDILLR-GQQQGVFQAGLDARDVHRLISSFSFYQVS 172
                 78999*******96.***********************999855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      751  (0.0418874); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1582.86
//
Query:       CTQ28566.1  [L=70]
Description: hypothetical protein CH1034_240063 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-34  117.9   0.5    1.5e-34  117.8   0.5    1.0  1  DUF2767   Protein of unknown function (DUF2767)


Domain annotation for each model (and alignments):
>> DUF2767  Protein of unknown function (DUF2767)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   0.5   8.1e-39   1.5e-34       1      67 []       1      67 [.       1      67 [. 0.99

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 8.1e-39
     DUF2767  1 MkrdvleeelYdEvCRvvGdvVlvlaelGqetkriviadvlrTrlarkkdqrdaleqkalEkairll 67
                M++++++++lY+E+CRvvG+vVl++++lGqe+k+ivia+vlrT+la++k+qr++l+++a+Ek+i++l
  CTQ28566.1  1 MGNKAKDDDLYQEMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTSLANRKIQRSPLTVEAMEKVIHAL 67
                9****************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 569.08
//
Query:       CTQ28567.1  [L=64]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 482.74
//
Query:       CTQ28568.1  [L=470]
Description: pyruvate kinase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-151  503.3  10.6   3.5e-151  503.0  10.6    1.1  1  PK         Pyruvate kinase, barrel domain
    1.6e-29  102.5   0.8    4.8e-29  101.0   0.3    2.1  2  PK_C       Pyruvate kinase, alpha/beta domain
    0.00024   20.3   0.3    0.00084   18.5   0.3    2.0  1  HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.0  10.6  5.8e-155  3.5e-151       1     344 [.       1     341 [.       1     345 [. 0.98

  Alignments for each domain:
  == domain 1  score: 503.0 bits;  conditional E-value: 5.8e-155
                 ---SEEEEEESCCCTSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHTTTTS-EEEEE---S-EBB--BTTCSSSEEE-TTSEEEEE-SCT CS
          PK   1 lrrtkivctlGPasesvekleklieaGlnvvrlnfshGsheehqerienvreaekklgkkvaillDtkGpeirtgllkdgkkdielkegdklkvsldek 99 
                 +++tkivct+GP++es e+l+k++eaG+nv+rlnfshG++ eh +ri+n+r+++ k+gkk aillDtkGpeirt +l++g+ d++lk+g+++++++d++
  CTQ28568.1   1 MKKTKIVCTIGPKTESEEMLTKMLEAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKKAAILLDTKGPEIRTIKLEGGN-DVSLKAGQTFTFTTDKS 98 
                 69*****************************************************************************88.***************** PP

                 CTTTBBTTEEEBS-TTHHHHS-TTEEEEETTTTEEEEEEEEETTEEEEEEESS-EEE-SS-BEE-TTS---S-SS-HHHHHHHHHHHHCT-SEEEETTE CS
          PK 100 lkeegdeelialdyknivkdvevGktilvdDGllslkvlevdeekeleveventgvlgskkgvnlpgtkvdlpalsekDkadlrfgvkqgvdliaasfv 198
                 + +  ++e++a++y++ ++d+ vG+t+lvdDGl++++v++++ +k + ++v n+g lg++kgvnlpg+++ lpal+ekDk+dl fg +qgvd++aasf+
  CTQ28568.1  99 VIG--NNEIVAVTYEGFTSDLAVGNTVLVDDGLIGMEVTAIEGNK-VICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFI 194
                 996..59************************************99.***************************************************** PP

                 -SHHHHHHHHHHHTCCC.TTSEEEEEE-SCHHHHTHHHHHHHSSEEEEEHHHHHHHSTCCCHHHHHHHHHHHHHHHT--EEEESSTTGGGGTSSS--HH CS
          PK 199 rkasDvkevrevleeeg.keikiiakienqegvenldeileasDgimvarGDlGieipaekvllvqkklikkcnlagkpvitatqmlesmiknPrptra 296
                 rk sDv e+re l+++g ++i+ii+kienqeg++n+deileasDgimvarGD+G+eip+e+v+++qk++i+kc +a k+vitatqml+smiknPrptra
  CTQ28568.1 195 RKRSDVVEIREHLKAHGgENIQIISKIENQEGLNNFDEILEASDGIMVARGDMGVEIPVEEVIFAQKMIIEKCIRARKVVITATQMLDSMIKNPRPTRA 293
                 ***************999********************************************************************************* PP

                 HHHHHHHHHHHT-SEEEESHHHHTSS-HHHHHHHHHHHHHHHHHTS-H CS
          PK 297 evsDvanavlDGtDavmLsgetakGkyPveavkamaevaleaekalke 344
                 e+ Dvana+lDGtDavmLsge+akGkyP eav++ma+++ ++++ +++
  CTQ28568.1 294 EAGDVANAILDGTDAVMLSGESAKGKYPLEAVTIMATICERTDRVMTS 341
                 ******************************************998876 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         2   1.2e+04      17      29 ..     103     115 ..      99     118 .. 0.72
   2 !  101.0   0.3     8e-33   4.8e-29       1     117 []     356     468 ..     356     468 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2
                 SEEEEE-SSSHHH CS
        PK_C  17 kaIvvltesGetA 29 
                 + Iv++t  G t 
  CTQ28568.1 103 NEIVAVTYEGFTS 115
                 6788888888875 PP

  == domain 2  score: 101.0 bits;  conditional E-value: 8e-33
                 HHHHHHHHHHHHHHT-SEEEEE-SSSHHHHHHHHT-TSSEEEEEESHHHHHHHHHHCTTEEHHH.HHHHH...TTSHHHHHHHHHHHTTSS-STSEEEE CS
        PK_C   1 eaiakaaveaaeelgakaIvvltesGetArliskyrpkvpiiavtpneltarqlalyrGvypvlvekaktaestdellreavkvakeaglvkkgdevvv 99 
                 ea+++ ave+ae+l+a +Ivv+t+ G++Ar + ky+p++ i+a+t+ne tarql l++Gv+p lve+     std+++  + + a+++gl++kgd vv+
  CTQ28568.1 356 EAVCRGAVETAEKLEAPLIVVATQGGKSARAVRKYFPDATILALTTNETTARQLVLSKGVVPQLVEE---IASTDDFYHLGKDLALKSGLARKGDVVVM 451
                 89**************************************************************986...789****99******************** PP

                 EE-SSSS..SS--EEEEE CS
        PK_C 100 taGtpkgesgttNtlrVv 117
                 ++G     sgttNt+ V+
  CTQ28568.1 452 VSGALVP-SGTTNTASVH 468
                 ***9876.9******997 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.3   1.4e-07   0.00084      75     153 ..     175     246 ..     169     309 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.4e-07
                 HHHGG.HHHTTSSEEEESS--SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHH.TSTTEEEEEE-HHH CS
   HpcH_HpaI  75 kqdle.vldlgaqvvlvPkvetaeealevvsalrepekgirganketrllaqiEsaegvknaeeIa.avegldgvflGaeD 153
                 kqdl+   ++g++ v   ++ ++ +++e+ + l+ +        ++++++  iE +eg++n +eI+ a++g++++     D
  CTQ28568.1 175 KQDLIfGCEQGVDFVAASFIRKRSDVVEIREHLKAHG------GENIQIISKIENQEGLNNFDEILeASDGIMVA---RGD 246
                 6777778889999999999999999999999999998......79*********************888776654...444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3600.59
//
Query:       CTQ28569.1  [L=78]
Description: murein lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-26   90.1  10.2      1e-25   89.9  10.2    1.1  1  LPP             Lipoprotein leucine-zipper
    0.00014   22.2   8.9    0.00018   21.8   7.3    1.7  2  Alanine_zipper  Alanine-zipper, major outer membrane lipoprot
    0.00039   20.5   0.2     0.0038   17.4   0.1    2.0  2  JIP_LZII        JNK-interacting protein  leucine zipper II
    0.00063   19.6   0.9    0.00069   19.4   0.9    1.0  1  MctB            Copper transport outer membrane protein, MctB
     0.0017   18.3   0.2     0.0021   18.0   0.2    1.1  1  TMF_DNA_bd      TATA element modulatory factor 1 DNA binding
     0.0018   18.0   0.1     0.0022   17.7   0.1    1.2  1  DivIC           Septum formation initiator
     0.0029   17.7   1.4     0.0034   17.5   1.4    1.1  1  ADIP            Afadin- and alpha -actinin-Binding
     0.0036   17.5   0.2      0.004   17.4   0.2    1.1  1  DUF948          Bacterial protein of unknown function (DUF948
     0.0038   15.5   0.4     0.0041   15.4   0.4    1.0  1  EzrA            Septation ring formation regulator, EzrA
     0.0073   16.7   2.5      0.011   16.2   2.5    1.3  1  NPV_P10         Nucleopolyhedrovirus P10 protein
  ------ inclusion threshold ------
      0.011   15.8   2.0      0.013   15.6   2.0    1.1  1  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
      0.013   15.5   1.6      0.014   15.3   1.6    1.0  1  YscO            Type III secretion protein YscO
      0.013   15.5   0.2      0.017   15.2   0.2    1.2  1  DUF1664         Protein of unknown function (DUF1664)
      0.014   15.5   1.2      0.016   15.3   1.2    1.1  1  Tropomyosin_1   Tropomyosin like
      0.019   15.4   0.1      0.023   15.2   0.1    1.2  1  DUF16           Protein of unknown function DUF16
      0.025   14.0   1.2      0.031   13.7   1.2    1.0  1  Cluap1          Clusterin-associated protein-1
      0.026   15.0   0.5      0.034   14.6   0.5    1.1  1  ZapB            Cell division protein ZapB
      0.029   13.0   0.7       0.03   13.0   0.7    1.0  1  DUF3138         Protein of unknown function (DUF3138)
      0.029   13.5   0.5      0.031   13.4   0.5    1.0  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
       0.03   14.8   1.6      0.034   14.6   1.6    1.3  1  EspB_PE         ESX-1 secreted protein B PE domain
      0.033   13.1   0.4      0.037   12.9   0.4    1.0  1  Spc7            Spc7 kinetochore protein
      0.034   14.2   0.7      0.052   13.6   0.7    1.3  1  TolA_bind_tri   TolA binding protein trimerisation
      0.037   14.1   0.2       0.04   14.0   0.2    1.1  1  COG2            COG (conserved oligomeric Golgi) complex comp
      0.053   14.2   0.1      0.063   13.9   0.1    1.2  1  AKNA            AT-hook-containing transcription factor
      0.055   13.9   0.2      0.073   13.5   0.2    1.3  1  FlaC_arch       Flagella accessory protein C (FlaC)
      0.065   13.4   0.7        0.1   12.7   0.3    1.5  1  MbeD_MobD       MbeD/MobD like
       0.17   12.5   1.7       0.22   12.2   1.7    1.2  1  SlyX            SlyX
       0.79   10.0   6.3       0.26   11.5   1.4    2.2  2  XhlA            Haemolysin XhlA
        1.8    7.9   8.0       0.28   10.5   3.1    1.7  2  DUF4407         Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9  10.2   1.6e-28     1e-25       1      53 []      26      78 .]      26      78 .] 0.99

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 1.6e-28
         LPP  1 kldeLssqVsqLkskvdqlssdvnsakaaaqaakeEAaRANqRlDNiaqsYkK 53
                k+d+Lss+V++L++kvdqls+dvn++++++qaak++AaRANqRlDN+a+sY+K
  CTQ28569.1 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQAHSYRK 78
                89**************************************************9 PP

>> Alanine_zipper  Alanine-zipper, major outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.052        32       7      21 ..      24      38 ..      22      39 .. 0.87
   2 !   21.8   7.3   2.9e-07   0.00018       1      39 [.      32      70 ..      32      75 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.052
  Alanine_zipper  7 qakadqaeqdaaaak 21
                    +ak+dq+++d++ ++
      CTQ28569.1 24 NAKIDQLSSDVQTLN 38
                    689********9876 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 2.9e-07
  Alanine_zipper  1 aqveelqakadqaeqdaaaaksaadeAkskAdeAaarAe 39
                    ++v+ l+ak+dq++ d++a +s+ ++Ak  A+ A++r +
      CTQ28569.1 32 SDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70
                    689********************************9865 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.29   1.8e+02      33      46 ..      25      38 ..      25      39 .. 0.87
   2 !   17.4   0.1   6.1e-06    0.0038      32      65 ..      38      71 ..      35      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.29
    JIP_LZII 33 arvdeLtsereiLr 46
                a++d+L+s+ ++L+
  CTQ28569.1 25 AKIDQLSSDVQTLN 38
                69*******99885 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 6.1e-06
    JIP_LZII 32 IarvdeLtsereiLreEleslqkakerlesrike 65
                 a+vd+L+++ +++r+++++ ++  +r ++r+ +
  CTQ28569.1 38 NAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71
                58*****************************987 PP

>> MctB  Copper transport outer membrane protein, MctB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.9   1.1e-06   0.00069      22      75 ..      11      68 ..       6      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.1e-06
        MctB 22 ivlGsgvlsd....nlldtlegqveelreekeelraeadaleaqleaaddfaaavapr 75
                ++lGs++l++    + +d+l+++v++l+++ ++l+++++a++++++aa+d aa++ +r
  CTQ28569.1 11 VILGSTLLAGcssnAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQR 68
                6789999888877555****************************99998877776655 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2   3.5e-06    0.0021      11      59 ..      24      72 ..      22      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.5e-06
  TMF_DNA_bd 11 DeqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkklekl 59
                +++I+qL +  + L +k ++l+n +  +r++++ +  + ++ +++l+++
  CTQ28569.1 24 NAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72
                6899*******************************99999999999887 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   3.6e-06    0.0022       3      54 ..      11      62 ..       7      75 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.6e-06
                XXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXX CS
       DivIC  3 llfllllifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksde 54
                ++++  l  g ++  ++ ql +++++l+a++++l+++ +++ + v+  k+d 
  CTQ28569.1 11 VILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDA 62
                5666777777788888888888888888888888888888888888886544 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.4   5.5e-06    0.0034      57     110 ..      22      75 ..      19      78 .] 0.83

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.5e-06
        ADIP  57 slnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqk 110
                 s+n++i +l+++ + l++k+++l++ + + ++ +++++ + + ++++l ++ + 
  CTQ28569.1  22 SSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQAHS 75 
                 578889999999999999999999999999999999999999999988887765 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   6.5e-06     0.004      25      71 ..      24      70 ..       6      77 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.5e-06
      DUF948 25 kktldeaaatieelekqvdpilkevedllakvnelledvneklekvd 71
                +  +d++++ +++l+ +vd+++++v+++ + v++  +d  +  +++d
  CTQ28569.1 24 NAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70
                33455555555555555555555555555555555555555555555 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   6.6e-06    0.0041     108     159 ..      25      76 ..      21      78 .] 0.60

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.6e-06
                 HHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHHHHHT--TTTTHH CS
        EzrA 108 eeldeveekikkileelkelteseeknreeieklkekYrelrkkllanrfsy 159
                 +++d++ ++++++++++++l +  +  r+ ++++k++  + +++l ++ +sy
  CTQ28569.1  25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQAHSY 76 
                 4566666666666666666666666666666666666666666666666666 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.5   1.7e-05     0.011       9      49 ..      30      74 ..      23      78 .] 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.7e-05
     NPV_P10  9 IradikavddkVdalqqqv....ddvqenlpdvtelnekLdaqsa 49
                  +d++ ++ kVd l++ v     dvq+   d    n++Ld+q+ 
  CTQ28569.1 30 LSSDVQTLNAKVDQLSNDVnamrSDVQAAKDDAARANQRLDNQAH 74
                5689***************55555666666677889999999976 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   2.0   2.1e-05     0.013       3      48 ..      27      72 ..      23      78 .] 0.49

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.1e-05
  TPR_MLP1_2  3 lksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYere 48
                +++l +++++l+++ +++ ++++++++d+++ ++ a++a+q+  ++
  CTQ28569.1 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72
                4445555555555555555555555555555555555555544433 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   1.6   2.3e-05     0.014      67     115 ..      26      74 ..      21      78 .] 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  67 elekvkqqvalLrekeaelekqveeakqqleaerealrqarkelqearr 115
                  ++++ + v+ L +k+ +l ++v  ++  ++a+ + +++a + l +  +
  CTQ28569.1  26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQAH 74 
                 6999999****************************99999999987655 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.2   2.7e-05     0.017      62     103 ..      28      69 ..      19      76 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.7e-05
     DUF1664  62 rhLssridrvdkkldeqkeiskeikeevtevredlseigedv 103
                 ++Lss+++++++k+d+ ++  ++++++v+++++d ++ ++ +
  CTQ28569.1  28 DQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 
                 567777777777777777777777777777777766655544 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   1.2   2.7e-05     0.016      32      75 ..      29      72 ..      22      78 .] 0.78

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.7e-05
  Tropomyosin_1 32 ekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnn 75
                   +  ++++ L+ k++ql ++v+ + ++++ ak+ a  ++++  n+
     CTQ28569.1 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72
                   56678999**********************99998887765544 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   3.7e-05     0.023      47      82 ..      24      59 ..      10      75 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.7e-05
                .HHHHHHHHHHHHHHHHHHHHHHHHHHHHH...... CS
       DUF16 47 geqinkleqkvekqgekikelkveqkaqgeelnkvd 82
                + +i++l   v+++++k+++l+++++a + ++++ +
  CTQ28569.1 24 NAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAK 59
                567888888888888888888888888888777433 PP

>> Cluap1  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.2   5.1e-05     0.031     172     218 ..      25      71 ..      22      75 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.1e-05
      Cluap1 172 eaikkvkeelektkkalenlesdeanLeakiekkkqeleraqkrLqs 218
                 ++i++++++++++++++++l++d +++ + ++  k +  ra++rL++
  CTQ28569.1  25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 
                 67999****************************************75 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.5   5.5e-05     0.034      19      64 ..      26      71 ..      24      73 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.5e-05
        ZapB 19 titlLqmeieeLkeeneelkeenreleeeneqlkeereawqerlkk 64
                +i++L+  ++ L +++ +l++  +++++ +++ k++ +  ++rl++
  CTQ28569.1 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71
                6888999999999999999999999999999999999999999975 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.7   4.8e-05      0.03      11      57 ..      19      64 ..       4      76 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.8e-05
     DUF3138 11 alaldglaaaaatadrikalkaqltalqrqvkelraalaaakaaaGg 57
                a    + a +++ ++++++l+a++++l + v+++r+ ++aak  a  
  CTQ28569.1 19 A-GCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64
                4.345678888899*************************99976654 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.5   4.9e-05     0.031      77     128 ..      21      72 ..      12      78 .] 0.57

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.9e-05
       Atg14  77 adlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleer 128
                 +++++++ +l+ ++++l++++++ ++ + ++++++   + d++ ++++l + 
  CTQ28569.1  21 CSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 
                 4555555555555555555555555555555555555555555555555443 PP

>> EspB_PE  ESX-1 secreted protein B PE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.6   5.5e-05     0.034      29      72 ..      35      78 .]      10      78 .] 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.5e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     EspB_PE 29 elakaaveqLnasAealrkylaageaErerLAesLrnaAkaYee 72
                ++ +a v+qL+   +a+r+ ++a++++++r  + L+n A  Y++
  CTQ28569.1 35 QTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQAHSYRK 78
                4556789***********************************86 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.4   5.9e-05     0.037     211     261 ..      23      73 ..      20      78 .] 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.9e-05
        Spc7 211 lkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeck 261
                  +a+i++++ ++++l++++++l+++++++++  + ++++ a+a++ l+++ 
  CTQ28569.1  23 SNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 
                 567888888888888888888888888888888888888888888887664 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.7   8.4e-05     0.052      26      72 ..      26      72 ..      22      75 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.4e-05
  TolA_bind_tri 26 qlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlrkleag 72
                   ++++l++++++L+ ++++l+++++ ++   +    d  +  ++l ++
     CTQ28569.1 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72
                   68899999999999999999999998887777766666666666555 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   6.5e-05      0.04      59     102 ..      29      72 ..      15      78 .] 0.63

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.5e-05
        COG2  59 slSghLvglqeeleevesplaaarkkvesvreklsereeevesk 102
                 +lS+  + l++++++++ +++a+r++v+++++  +++ ++++++
  CTQ28569.1  29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 
                 35555556666666666666666666666666666666666555 PP

>> AKNA  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1    0.0001     0.063      46      80 ..      25      59 ..      15      75 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.0001
        AKNA 46 aeIyqlgqrleeLkdqtdqlkqkveefskdiaqds 80
                a+I ql   ++ L  ++dql + v+++++d++  +
  CTQ28569.1 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAK 59
                89****************************96543 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   0.00012     0.073       8      38 ..      26      56 ..      24      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00012
   FlaC_arch  8 klsklsteletvkkeneelsksveelkenVk 38
                k+++ls+ ++t+ ++ ++ls++v+ +  +V+
  CTQ28569.1 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQ 56
                8999999***************999999986 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   0.00016       0.1      48      70 .]      24      46 ..      18      56 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00016
   MbeD_MobD 48 seqvtgLsqQVesLseqvrRlsr 70
                ++++++Ls  V+ L+ +v+ ls+
  CTQ28569.1 24 NAKIDQLSSDVQTLNAKVDQLSN 46
                57899999999999999999996 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.7   0.00036      0.22      18      58 ..      26      66 ..      23      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00036
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXX CS
        SlyX 18 tieeLndvvaeqqqqidrlqrqlrllaerlkeleessgase 58
                 i++L+  v   + ++d+l   +++++  ++++++++++++
  CTQ28569.1 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARAN 66
                6999**************************99998876443 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1       0.1        64      10      28 ..      24      42 ..      22      45 .. 0.81
   2 ?   11.5   1.4   0.00042      0.26       4      36 ..      39      71 ..      29      76 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.1
        XhlA 10 etkldnleervdkleekaa 28
                ++k+d l+++v++l+ k +
  CTQ28569.1 24 NAKIDQLSSDVQTLNAKVD 42
                5799999999999988876 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00042
        XhlA  4 erlerietkldnleervdkleekaaeaeekikn 36
                 ++ ++ ++++ + ++v+  +++aa+a ++++n
  CTQ28569.1 39 AKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71
                345555566666666777777777777777776 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2      0.55   3.4e+02      15      31 ..       7      23 ..       3      25 .. 0.88
   2 ?   10.5   3.1   0.00045      0.28     119     167 ..      26      73 ..      22      77 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.55
     DUF4407 15 giGavvlltallAalsg 31
                 +Gav+l   llA++s 
  CTQ28569.1  7 VLGAVILGSTLLAGCSS 23
                58************995 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00045
     DUF4407 119 eakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkel 167
                 ++++l++ ++ +l+a++++l ++++a+++ ++aa+++++++++ +++++
  CTQ28569.1  26 KIDQLSSDVQ-TLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 
                 3444433333.47888888888888888888888888888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1573  (0.087735); expected 358.6 (0.02)
Passed bias filter:                      927  (0.0517039); expected 358.6 (0.02)
Passed Vit filter:                       190  (0.0105974); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 619.64
//
Query:       CTQ28570.1  [L=328]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-24   85.3   0.0    8.7e-24   84.0   0.0    1.7  2  Ldt_C     L,D-transpeptidase C-terminal domain
    4.2e-20   72.6   0.0    6.7e-20   72.0   0.0    1.3  1  YkuD      L,D-transpeptidase catalytic domain
    1.5e-06   28.2   0.0    3.3e-06   27.1   0.0    1.6  1  LysM      LysM domain
  ------ inclusion threshold ------
       0.13   12.5   0.4       0.54   10.5   0.0    2.2  2  DUF2749   Protein of unknown function (DUF2749)


Domain annotation for each model (and alignments):
>> Ldt_C  L,D-transpeptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.3     1e+04      58      67 .]     224     233 ..     213     233 .. 0.76
   2 !   84.0   0.0   1.9e-27   8.7e-24       1      67 []     237     303 ..     237     303 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.3
       Ldt_C  58 errsGmPvev 67 
                 + ++G Pv++
  CTQ28570.1 224 QVKTGTPVRI 233
                 4689999987 PP

  == domain 2  score: 84.0 bits;  conditional E-value: 1.9e-27
       Ldt_C   1 PvKvsvEPdgsryvEvHqPLSrseeddpqtvpltlskelkkfledaevdkakvkaalerrsGmPvev 67 
                 PvK++vEPdg+ryvEvH+PLS++e ++++t  +tl++++++f ed++vd+ ++k+a++rr+G+Pv v
  CTQ28570.1 237 PVKFAVEPDGKRYVEVHRPLSQTEGENTRTIAYTLPAAFHAFAEDKAVDDLQLKKAMSRRAGYPVVV 303
                 9****************************************************************87 PP

>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   1.5e-23   6.7e-20       3     146 .]      98     233 ..      96     233 .. 0.81

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 1.5e-23
                 EEEEETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE---EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTTCECCCCEEE-STTS.- CS
        YkuD   3 yivvdlaeqrllvlyengklvlsfpvsvGgkkegdreTPlGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskvalgkvkfvfpngsg.i 100
                  ivv+lae rl+++  + +lv+ +p  +G   + + eTP++t r+++k +nptw+++  i  +++       p  + +++ +  lg++      g+g +
  CTQ28570.1  98 GIVVNLAELRLYYFPPGENLVQVYPLGIG---QLGLETPEMTTRVGQKIPNPTWTPTAGIRARSLEKGV-TLPA-VVPAGPNNPLGRYALRLAYGNGeY 191
                 59******8885555555588********...66********************988888776666554.4554.455666668888877776666659 PP

                 EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEEEE CS
        YkuD 101 yiHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpvvi 146
                  iHgt+apd  +     r S+GC+r++ +d+k+l+ +v++gtpv i
  CTQ28570.1 192 LIHGTNAPDSVGL----RVSSGCMRMNADDIKALFSQVKTGTPVRI 233
                 9*******88666....99*************************98 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   7.3e-10   3.3e-06       2      44 .]      43      86 ..      42      86 .. 0.96

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 7.3e-10
                EE-TT-.-HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEEE CS
        LysM  2 tVkkGD.TLwsIAkrygitveklleaNnlsspdkifpGqkLkiP 44
                tV++GD  L +IA+ +++    +leaN    p  ++pG++  iP
  CTQ28570.1 43 TVQEGDrNLQAIARHFDTAAMLILEANDTIAPVQPKPGTQVLIP 86
                9**************************8888888*******999 PP

>> DUF2749  Protein of unknown function (DUF2749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00012      0.54       1      24 [.       1      24 [.       1      34 [. 0.89
   2 ?   -1.2   0.1      0.54   2.4e+03      10      34 ..     302     321 ..     293     324 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
     DUF2749  1 msprilIvlviavaagagtilwlv 24
                m+++++I l+++ a+ga+t+ w v
  CTQ28570.1  1 MKRKTMITLALLSALGASTAAWAV 24
                9*********************86 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.54
     DUF2749  10 viavaagagtilwlvvqpragtsgs 34 
                 v+  +ag +t++ l     a +s+s
  CTQ28570.1 302 VVSAGAG-STATSL----SAQNSSS 321
                 3333333.344544....3445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2751.97
//
Query:       CTQ28571.1  [L=138]
Description: sulfur acceptor protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-41  139.0   0.0    7.6e-41  138.8   0.0    1.0  1  SufE      Fe-S metabolism associated domain


Domain annotation for each model (and alignments):
>> SufE  Fe-S metabolism associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.8   0.0   4.2e-45   7.6e-41       2     121 ..      12     132 ..      11     133 .. 0.98

  Alignments for each domain:
  == domain 1  score: 138.8 bits;  conditional E-value: 4.2e-45
                 HHHHHSSSHHHHHHHHHHHHHTS----CCCCCCCEEECTSSSEEEEEEEEETTS.EEEEEEESSHHHHHHHHHHHHHCTTEECCCCTCC-TCHHHHHTT CS
        SufE   2 eefsllddweeryrylielgkklpplpeelkteenkvkGCqsqvwlaaeledgk.lkfeadsdarivkGllalllevlsgktpeeilavdledfleelg 99 
                 ++fs++ +wee+y y+ielg++l+pl+ e+++ +n ++GCqsqvw++++ + ++ +++++dsda+ivkGl+a+++ +++  t+++i ++d++ ++e++ 
  CTQ28571.1  12 RNFSRCANWEEKYLYIIELGQRLAPLSPEEHSVQNIIQGCQSQVWIVMDQDPTGvITLRGDSDAAIVKGLIAVVFILYDRMTAQDITEFDVRPWFEKMA 110
                 58***********************************************998888******************************************** PP

                 SHHHHCHHHHHHHHHHHHHHHH CS
        SufE 100 lsehlspsRsnGlaamlkrika 121
                 l++hl+psRs+Gl+am++ i+a
  CTQ28571.1 111 LTQHLTPSRSQGLEAMIRAIRA 132
                 ********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1225.06
//
Query:       CTQ28572.1  [L=406]
Description: selenocysteine lyase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.2e-152  507.3   0.0   2.5e-152  507.1   0.0    1.0  1  Aminotran_5      Aminotransferase class-V
    0.00092   18.6   0.6     0.0013   18.1   0.6    1.1  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
     0.0069   15.0   0.0      0.029   12.9   0.0    1.7  2  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
      0.066   12.5   0.0      0.073   12.3   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  507.1   0.0  5.7e-156  2.5e-152       1     371 []      25     394 ..      25     394 .. 1.00

  Alignments for each domain:
  == domain 1  score: 507.1 bits;  conditional E-value: 5.7e-156
                  EEEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC.-TTTSEEEEETTS CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslars.lkpgdeivvteae 97 
                  +yldsaA++qkp++V+ a +e+y++ +a+vhr++h+l++eat+ +e++r++ a+++na s+ee++f++Gtte+inlva+s++++ + +gd+i+++e+e
   CTQ28572.1  25 VYLDSAASAQKPEAVIGAEAEFYRHGYAAVHRGIHTLSAEATARMEAVRQQAATFLNAGSAEEVVFVRGTTEGINLVANSWGNAnVGAGDNIIISEME 122
                  7************************************************************************************************* PP

                  HGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEE CS
  Aminotran_5  98 hhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDfl 195
                  hhan+vpwq+l+ r ga+++vipl+++g+l+ld +  l +++t+l+ait vsnv+Gt +p++++++la+++ga vlvD+aqav+h+p+dv++lg+Df+
   CTQ28572.1 123 HHANIVPWQMLCARVGAELRVIPLNPDGTLQLDVVPGLFDPRTRLLAITEVSNVLGTENPLAALIALAHQHGAKVLVDGAQAVMHHPVDVQALGCDFY 220
                  ************************************************************************************************** PP

                  EEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEET.TEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC CS
  Aminotran_5 196 afsghKllgPtGiGvlyvrkellekleplllggemveevsl.eettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlk 292
                  +fs+hKl+gPtGiGvly+r+ell+ + p+++gg+m+++vsl e+tt+++ap++feaGTpn+ giiglgaal y++++gl++i+++e++l+ y+l++l+
   CTQ28572.1 221 VFSAHKLYGPTGIGVLYARSELLQTMAPWEGGGSMIATVSLtEGTTWNQAPWRFEAGTPNTGGIIGLGAALTYVSQLGLTQIAEYEQTLMRYALDALR 318
                  ************************************************************************************************** PP

                  TSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTTHHHHHHTT.S-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 293 slpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhcaqplmkrlalegtvRaSlyiynteeevdrl 371
                  ++p++ lygp    +r+++++fn+ ++ha dv+++Ld++gIavr+Ghhca+plm+r+++++++RaSl++ynt eevdrl
   CTQ28572.1 319 AVPDLILYGP---VQRKGVIAFNLGQHHAYDVGSFLDNYGIAVRTGHHCAMPLMARYQVPAMCRASLAMYNTTEEVDRL 394
                  *********9...9***************************************************************98 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.6   2.9e-07    0.0013      25     149 ..      72     205 ..      56     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.9e-07
                      HHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHH...TTTTTT-EEEEESSS-THHHHH....HHHTT-EEEEE-B-TTTSSB-GGGCGGG--TT CS
  DegT_DnrJ_EryC1  25 veeFEkafaaylgvkhaiavssGtaAlhlaLra...lgvgpgdeVIvpsltFvatana....vlelgakpvfvDvdpdtynidpaaieaaiter 111
                      v++ ++ f +   ++ ++ v   t+++ l+ +     +vg+gd +I+  +   a + +     +++ga+   +  +p + +++ + +  +  +r
       CTQ28572.1  72 VRQQAATFLNAGSAEEVVFVRGTTEGINLVANSwgnANVGAGDNIIISEMEHHANIVPwqmlCARVGAELRVIPLNP-DGTLQLDVVPGLFDPR 164
                      45555555555568889999999999999999888899**********99999886541112568999998888885.57888999******** PP

                      E..EEEEEB.-GGGB---HHHHHHHHHHCT-EEEEE-TT-T CS
  DegT_DnrJ_EryC1 112 t..kaIlpV.hlyGqvadmdalkaiaakhglkvieDaAhAl 149
                      t   aI+ V +++G  + ++al a+a++hg kv+ D A+A+
       CTQ28572.1 165 TrlLAITEVsNVLGTENPLAALIALAHQHGAKVLVDGAQAV 205
                      *666999885699***************************8 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.12   5.3e+02     242     270 ..      54      83 ..      49     106 .. 0.69
   2 !   12.9   0.0   6.5e-06     0.029      88     198 ..     110     226 ..      99     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.12
                      HHHHHTTHHHHHHHHHHH.HHHHHHHHHTS CS
  Cys_Met_Meta_PP 242 llrGlkTLslRlerhqen.AlkvAefLekh 270
                      ++rG++TLs    +  e   ++ A fL++ 
       CTQ28572.1  54 VHRGIHTLSAEATARMEAvRQQAATFLNAG 83 
                      789999999876655444145567777654 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.5e-06
                      S-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST.....TSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGT. CS
  Cys_Met_Meta_PP  88 lkaGdeivvsddlYggtqrllkkvlkklgievkfvdt.....sdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDnt. 175
                      + aGd+i++s+  +       + ++ ++g e +++        +l+ +   ++++t+l+ +  ++n l     ++++++la+++g+ v+vD + 
       CTQ28572.1 110 VGAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLnpdgtLQLDVVPGLFDPRTRLLAITEVSNVLGTENPLAALIALAHQHGAKVLVDGAq 203
                      5689999999998888888888888888888888865333335677788899***************************************752 PP

                      ..TTHTTTS-GGGGT-SEEEEETTT CS
  Cys_Met_Meta_PP 176 ..faspllqrplklgaDivvhSaTK 198
                        +  p+ +++  lg+D  v Sa K
       CTQ28572.1 204 avMHHPVDVQA--LGCDFYVFSAHK 226
                      22666776665..589999888877 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.6e-05     0.073     107     213 ..     150     241 ..      43     354 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
                      TBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT CS
  Beta_elim_lyase 107 GkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdl 200
                      G+++l+ +  + ++      +++l+ +t   n+      + + l+++ a+a+++g ++++DgA    a+  + ++v   + ++D  ++s+ K  
       CTQ28572.1 150 GTLQLDVVPGLFDP------RTRLLAITEVSNV----LGTENPLAALIALAHQHGAKVLVDGAQ---AV--MHHPVDVQALGCDFYVFSAHKL- 227
                      55555555555554......6778888888886....3355668899***************84...44..4445555566888888888884. PP

                      --SS-.EEEEE-HH CS
  Beta_elim_lyase 201 lanvG.gvlafrdd 213
                        + G gvl  r +
       CTQ28572.1 228 YGPTGiGVLYARSE 241
                      55677777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2835.40
//
Query:       CTQ28573.1  [L=424]
Description: component of SufBCD complex [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-70  236.1   0.2    4.3e-70  235.8   0.2    1.1  1  UPF0051   Uncharacterized protein family (UPF0051)
  ------ inclusion threshold ------
       0.15   12.2   0.2        4.7    7.4   0.0    2.8  3  DUF3576   Domain of unknown function (DUF3576)


Domain annotation for each model (and alignments):
>> UPF0051  Uncharacterized protein family (UPF0051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.8   0.2   4.8e-74   4.3e-70       3     218 .]     171     394 ..     169     394 .. 0.97

  Alignments for each domain:
  == domain 1  score: 235.8 bits;  conditional E-value: 4.8e-74
     UPF0051   3 fertlivveegaevtiieey........agcgvveifvgenAklkyvkvqnwsedavnlstkraeegrdaklelttvslggkltrkepsvelkgegaea 93 
                 + r+++ +e gae+ti+e+y        ++ g +++ v++nA+l+++k+  ++ ++++++++   +grda+  + ++ lgg++ r+++s++l ge++++
  CTQ28573.1 171 HYRHHLALESGAEATIVEHYlslneqphFTGGRLTMTVADNAHLQHIKLAFENARSYHFAHNDLLLGRDASAFSSSFLLGGQVLRHQTSTRLGGENSNL 269
                 5688899*************98877777667******************************************************************** PP

     UPF0051  94 elnglylakgkqhldtrtkvdhngpntssrilskgvlkdearavfrgkikvrkgaqktdahqenrnLllsdkaradtiPeleidaddvkasHgAtvGki 192
                 +ln+l++  +++ +d+rt +dh++  ++sr+l+k++++d++ravf+g i v++ a ktd++++n+nLll++ a++dt+P+lei+addvk+sHgAtvG+i
  CTQ28573.1 270 RLNSLAMPVKNEVCDSRTWLDHQVGYCTSRQLHKTIVSDKGRAVFNGLINVAPLALKTDGQMTNNNLLLGRLAEVDTKPQLEIYADDVKCSHGATVGRI 368
                 *************************************************************************************************** PP

     UPF0051 193 deeqlfYLmsRGlseeeArrlivrgf 218
                 deeqlfYL+sRG++++ A+++i+++f
  CTQ28573.1 369 DEEQLFYLRSRGIEQQAAQQMILYAF 394
                 ************************99 PP

>> DUF3576  Domain of unknown function (DUF3576)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.051   4.5e+02      52      70 ..      98     116 ..      97     140 .. 0.83
   2 ?    7.4   0.0   0.00052       4.7      54      94 ..     267     307 ..     264     312 .. 0.93
   3 ?   -1.3   0.0      0.27   2.4e+03      52      68 ..     398     414 ..     376     418 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.051
     DUF3576  52 ldkeLradalkvsvfkqvr 70 
                 l+++L a +++vsv +q +
  CTQ28573.1  98 LSDDLAASGVEVSVDNQRQ 116
                 6789**********99987 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00052
     DUF3576  54 keLradalkvsvfkqvrkegewvdaevdaetaselenaILt 94 
                 ++Lr ++l + v ++v+++ +w d++v   t+++l ++I++
  CTQ28573.1 267 SNLRLNSLAMPVKNEVCDSRTWLDHQVGYCTSRQLHKTIVS 307
                 68999********************************9985 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.27
     DUF3576  52 ldkeLradalkvsvfkq 68 
                 l++++r+dal+ +v  +
  CTQ28573.1 398 LTEAIRSDALREQVLAR 414
                 56778888888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3154.94
//
Query:       CTQ28574.1  [L=248]
Description: component of SufBCD complex, ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-19   71.4   0.0    1.4e-19   71.0   0.0    1.2  1  ABC_tran        ABC transporter
    2.5e-07   30.4   0.4      0.013   15.0   0.1    2.2  2  SMC_N           RecF/RecN/SMC N terminal domain
    1.3e-05   25.2   0.0     0.0045   16.8   0.0    2.1  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    0.00062   19.5   0.0     0.0012   18.6   0.0    1.4  1  AAA_29          P-loop containing region of AAA domain
     0.0046   16.9   0.0     0.0071   16.3   0.0    1.3  1  RsgA_GTPase     RsgA GTPase
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.018   15.2   0.0    1.3  1  AAA_33          AAA domain
      0.016   15.2   0.1          8    6.5   0.0    2.3  2  AAA_5           AAA domain (dynein-related subfamily)
       0.02   13.6   0.0      0.031   12.9   0.0    1.3  1  AAA_13          AAA domain
       0.02   15.4   0.1      0.045   14.2   0.0    1.6  2  AAA_23          AAA domain
      0.024   15.2   0.0      0.034   14.7   0.0    1.6  1  AAA_18          AAA domain
      0.027   14.7   0.1      0.078   13.2   0.0    1.8  2  AAA_28          AAA domain
      0.035   13.7   0.0      0.062   12.9   0.0    1.4  1  AAA_25          AAA domain
      0.035   14.4   0.4       0.28   11.5   0.4    2.2  1  AAA_22          AAA domain
      0.047   13.3   0.0      0.086   12.4   0.0    1.3  1  AAA_27          AAA domain
      0.084   12.6   0.0       0.15   11.8   0.0    1.3  1  Cytidylate_kin  Cytidylate kinase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   1.2e-22   1.4e-19       1     135 [.      17     172 ..      17     174 .. 0.80

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 1.2e-22
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................. 79 
                 l+ ++l++++ge++ai+G+nG+GKStL ++lag ++   t G+++++gk+l e   + ++ + i + +q p   p+++++                   
  CTQ28574.1  17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYevTGGRVEFKGKNLLElAAEDRAGEGIFMAFQYPVEIPGVSNQFFlqtalnavrnyrgqeal 115
                 5789*****************************9988789***********99889999999********99999996655589999996654444332 PP

                 HHHTC...HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxx...xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdee...iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEp 135
                 +   +    + + +k++l +++++ +++s    +SgG+k+r  + ++ + +p+l +lDE 
  CTQ28574.1 116 D---RfdfQDLMEEKIKLLQMPEDLLTRSVnVGFSGGEKKRNDILQMAVLEPELCILDES 172
                 1...13432222334444446666666666699**************************6 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.5e-05      0.03      25      42 ..      28      45 ..      19      50 .. 0.85
   2 !   15.0   0.1   1.1e-05     0.013     137     203 ..     146     209 ..      96     224 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.5e-05
                SEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlld 42
                ++ ai+GpNGSGKs l  
  CTQ28574.1 28 EVHAIMGPNGSGKSTLSA 45
                5789**********9866 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.1e-05
                 S-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
       SMC_N 137 LSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemle 203
                 +SgGek+   + L +A+ +  p  l++lDe d+ LD    k+v++ +++ ++    fi++++ +++l 
  CTQ28574.1 146 FSGGEKKRNDI-LQMAVLE--P-ELCILDESDSGLDIDALKIVSQGVNALRDGkRAFIIVTHYQRILD 209
                 57777765554.4444443..3.39***********************98876478999999988775 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.8e-06    0.0045       2      83 ..      30     106 ..      29     143 .. 0.67
   2 !    6.7   0.0    0.0048       5.7     258     303 .]     164     209 ..     146     209 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.8e-06
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv 83 
                  ++ GpNgsGKS+L  +l +  r d +v+g+  e+ g++ +   +    +  + ++f++ +e   + gv  +++l+   ++v
  CTQ28574.1  30 HAIMGPNGSGKSTLSATLAG--REDYEVTGGRVEFKGKNLLELAAEDRAGEGIFMAFQYPVE---IPGVSNQFFLQTALNAV 106
                 5799**************44..3366777777776666666666655555555555555555...77777777777777777 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0048
      AAA_21 258 gsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                 + l ++DE ++gL+  +l+ + + +++l++++  +i++TH   +ld
  CTQ28574.1 164 PELCILDESDSGLDIDALKIVSQGVNALRDGKRAFIIVTHYQRILD 209
                 3899************************************887775 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   9.7e-07    0.0012      16      38 ..      21      43 ..      11      48 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.7e-07
      AAA_29 16 tieidlkgatlltGpsGsGKSTl 38
                 +e+++ +++ ++Gp+GsGKSTl
  CTQ28574.1 21 NLEVRPGEVHAIMGPNGSGKSTL 43
                577888889*************8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.9e-06    0.0071      81     128 ..       8      56 ..       2      66 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.9e-06
                  E--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  81 lvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktg 128
                   v +++k+ l+ l+ +++  ++ +++G+ G GKStL  +l+++++ ++ 
   CTQ28574.1   8 HVAVEDKAILRGLNLEVRPgEVHAIMGPNGSGKSTLSATLAGREDYEVT 56 
                  566777777888888888779*********************9988875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   1.5e-05     0.018       3      27 ..      31      55 ..      29     135 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.5e-05
      AAA_33  3 llvGlpGsGKstlaerllkklgavl 27
                 + G++GsGKstl+  l+ ++++++
  CTQ28574.1 31 AIMGPNGSGKSTLSATLAGREDYEV 55
                678***************9999876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0069       8.2       4      21 ..      32      49 ..      31      56 .. 0.86
   2 ?    6.5   0.0    0.0067         8      35      75 ..     132     173 ..     122     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0069
                EE--SSSSHHHHHHHGGG CS
       AAA_5  4 LvGppGtgKselaerlaa 21
                + Gp G+gKs+l+  la 
  CTQ28574.1 32 IMGPNGSGKSTLSATLAG 49
                57***********99986 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0067
                 T--HHHHH--B--..........--------G-SEEEEESGG CS
       AAA_5  35 dtteedlkgrreik.ngttslvdsplvraaregeilvlDEve 75 
                 +++e+ l+ ++++  +g+++ ++ +l  a+ e+e+++lDE +
  CTQ28574.1 132 QMPEDLLTRSVNVGfSGGEKKRNDILQMAVLEPELCILDESD 173
                 58899999999999*9999999999999***********965 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.6e-05     0.031      20      42 ..      31      53 ..      21      89 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.6e-05
      AAA_13 20 liYGwNGaGKTtLSrllrslelg 42
                 i G NG+GK+tLS  l+  e  
  CTQ28574.1 31 AIMGPNGSGKSTLSATLAGREDY 53
                689**************997543 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.8e-05     0.045      21      35 ..      29      43 ..      14      48 .. 0.79
   2 ?   -2.5   0.0       4.9   5.9e+03     169     169 ..     121     121 ..      64     158 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.8e-05
      AAA_23 21 ltlItGpNGaGKTTi 35
                + +I GpNG+GK+T+
  CTQ28574.1 29 VHAIMGPNGSGKSTL 43
                679***********8 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.9
      AAA_23 169 k 169
                 +
  CTQ28574.1 121 Q 121
                 2 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.8e-05     0.034       3      36 ..      32      75 ..      31     203 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.8e-05
      AAA_18  3 ltGtpGvGKttlakeLskrlgf..........gvnlrdvakeng 36
                ++G+ G+GK+tl+  L+ r+ +          g nl ++a+e++
  CTQ28574.1 32 IMGPNGSGKSTLSATLAGREDYevtggrvefkGKNLLELAAEDR 75
                89**************9998888887777777777777777765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.5e-05     0.078       3      26 ..      31      55 ..      29      76 .. 0.87
   2 ?   -2.1   0.0       3.3   3.9e+03      14      29 ..     231     246 ..     230     247 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.5e-05
      AAA_28  3 vitGgestGKTtlleaLaar.gypv 26
                +i+G+ ++GK+tl++ La r +y+v
  CTQ28574.1 31 AIMGPNGSGKSTLSATLAGReDYEV 55
                89****************7757776 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.3
      AAA_28  14 tlleaLaargypvvpE 29 
                 +l+++L+++gy +++E
  CTQ28574.1 231 SLVKQLEEQGYGWLTE 246
                 5899*******99987 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.2e-05     0.062      31      55 ..      25      49 ..      14      78 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.2e-05
      AAA_25 31 pagelallaGapgtGKttlaldlal 55
                + ge+++++G+ g+GK+tl   la 
  CTQ28574.1 25 RPGEVHAIMGPNGSGKSTLSATLAG 49
                459****************998885 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   0.00023      0.28       8      30 ..      30      52 ..      24     210 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00023
      AAA_22  8 lvvtGesGtGKTtllrrlleqld 30
                 +++G+ G+GK+tl ++l+ + d
  CTQ28574.1 30 HAIMGPNGSGKSTLSATLAGRED 52
                589************99988764 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.2e-05     0.086      19      45 ..      20      46 ..      16      49 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.2e-05
      AAA_27 19 ldfsaeeadlhliyGpNEAGKstalrA 45
                l+++    ++h i+GpN +GKst+ + 
  CTQ28574.1 20 LNLEVRPGEVHAIMGPNGSGKSTLSAT 46
                677778899**************8765 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.15       2      25 ..      31      54 ..      30      61 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
                    EEE-STTSSHHHHHHHHHHHHT-E CS
  Cytidylate_kin  2 aiDGPagsGKssvaralaeklglk 25
                    ai GP gsGKs+++ +la + +++
      CTQ28574.1 31 AIMGPNGSGKSTLSATLAGREDYE 54
                    799***************987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1808.67
//
Query:       CTQ28575.1  [L=495]
Description: component of SufBCD complex [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-69  232.0   0.0      8e-69  231.6   0.0    1.1  1  UPF0051   Uncharacterized protein family (UPF0051)
  ------ inclusion threshold ------
      0.059   13.2   0.0       0.16   11.8   0.0    1.6  1  CHIPS     Chemotaxis-inhibiting protein CHIPS
      0.078   12.8   0.3       0.16   11.8   0.3    1.5  1  DUF3463   Domain of unknown function (DUF3463)


Domain annotation for each model (and alignments):
>> UPF0051  Uncharacterized protein family (UPF0051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.6   0.0   1.3e-72     8e-69       2     218 .]     234     466 ..     233     466 .. 0.97

  Alignments for each domain:
  == domain 1  score: 231.6 bits;  conditional E-value: 1.3e-72
     UPF0051   2 qfertlivveegaevtiieeyagc............gvveifvgenAklkyvkvqnw......sedavnlstkra.eegrdaklelttvslggkltrke 81 
                 qfert++v++eg+ v++i   +gc            +vve++++++A++ky++vqnw       ++++n++tkra  eg+++k+++t+ ++g+++t+k+
  CTQ28575.1 234 QFERTILVADEGSYVSYI---EGCsapvrdsyqlhaAVVEVIIHKDAEVKYSTVQNWfpgdnnTGGILNFVTKRAlCEGENSKMSWTQSETGSAITWKY 329
                 89****************...677777777777777*************************9777**********87799******************* PP

     UPF0051  82 psvelkgegaeaelnglylakgkqhldtrtkvdhngpntssrilskgvlkdearavfrgkikvrkgaqktdahqenrnLllsdkaradtiPeleidadd 180
                 ps+ l+g+++ +e+ +++l++g+q++dt+tk++h g+nt+s+i+skg++++++++++rg +k+ + a++++++++++++l+++++ a+t+P++e++++ 
  CTQ28575.1 330 PSCILRGDNSIGEFFSVALTSGHQQADTGTKMIHIGKNTRSTIISKGISAGHSQNSYRGLVKIMPTATNARNYTQCDSMLIGPDCGAHTFPYVECRNNS 428
                 *************************************************************************************************** PP

     UPF0051 181 vkasHgAtvGkideeqlfYLmsRGlseeeArrlivrgf 218
                 ++++H+At+++i e+qlfY+ +RG+se++A ++iv+gf
  CTQ28575.1 429 AQLEHEATTSRIGEDQLFYCLQRGISEDDAISMIVNGF 466
                 *************************************9 PP

>> CHIPS  Chemotaxis-inhibiting protein CHIPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.6e-05      0.16      15      87 ..     221     293 ..     216     295 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.6e-05
       CHIPS  15 lrnylkkgtknsaqfekmviltenkgyytvylntplaedrknvellgkmyktyffkkgeskssyving.pgktn 87 
                 l  y++  + ++ qfe+ + l  + g y  y++   a  r   +l   +    + k  e k s v n  pg  n
  CTQ28575.1 221 LSTYFRINAEKTGQFERTI-LVADEGSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKDAEVKYSTVQNWfPGDNN 293
                 677899999999****975.6667899*************************************9985366655 PP

>> DUF3463  Domain of unknown function (DUF3463)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   2.7e-05      0.16      91     127 ..      80     116 ..      68     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.7e-05
     DUF3463  91 leetdwekygkgkdpkCanCmvhsgyEasavsdtvks 127
                  ++ ++++y + + p+C nC   +  E+ av++t ++
  CTQ28575.1  80 YDKLNYQDYSYYSAPSCGNCDETCASEPGAVQQTGAN 116
                 578899999999********************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3670.62
//
Query:       CTQ28576.1  [L=125]
Description: Fe-S cluster assembly protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-18   67.1   0.0    1.6e-18   66.9   0.0    1.0  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0     9e-23   1.6e-18       3     111 .]      18     118 ..      16     118 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 9e-23
                  EEE-HHHHHHHHHHHHCTTEC..EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEEE CS
  Fe-S_biosyn   3 itlteaAaeklkkllaedkke..lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLks 98 
                  +t+t+aAa+++++l+++++ +  lrL++++ g       C+ g+ y l+++ e+ +++d  +es+g k++   ++++f+ +g++ld+v +  +  +k+
   CTQ28576.1  18 LTMTPAAAAHIRDLMRKQPDKkgLRLGIKTSG-------CA-GFGYVLEMIAEP-APDDLLFESDGAKLFAPLQAMPFI-DGTELDYVREGLNEIFKF 105
                  8***************9877778*********.......**.************.************************.9***************** PP

                  ETCCEEEEEEEEE CS
  Fe-S_biosyn  99 dngilddnvglgk 111
                  +n+ ++ ++g+g+
   CTQ28576.1 106 HNPKAQHECGCGE 118
                  ***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1018.28
//
Query:       CTQ28577.1  [L=65]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 502.85
//
Query:       CTQ28578.1  [L=131]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-07   30.9   9.6    5.4e-07   30.1   9.6    1.3  1  DoxX      DoxX
  ------ inclusion threshold ------
      0.051   13.7   8.1      0.062   13.4   7.8    1.5  1  DoxX_2    DoxX-like family


Domain annotation for each model (and alignments):
>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   9.6     6e-11   5.4e-07       2      84 ..      11      93 ..      10      94 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 6e-11
        DoxX  2 llllRlllgvlfiahGlqkltgfglegtaaslaalglpppellaylaalvElvgglllllGll..tRlaAlalavtllvatltvh 84
                l l R+l+  +f+++G+  ++  ++++++++++ +glp p+l+a  +++++l+g+ l++++ +   ++++ +l+v++l ++ + h
  CTQ28578.1 11 LCLSRVLVTFFFWMAGIYGVF--HFAEIVQEMVTVGLPWPVLFAAGTIFCQLAGSALIVFNPAgyGWIGSGMLIVFTLLTIPLGH 93
                5678*****************..9************************************9862257************998877 PP

>> DoxX_2  DoxX-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   7.8   6.9e-06     0.062       3      55 ..      15      69 ..      13     122 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.9e-06
      DoxX_2  3 tvllalffllsGvakllraeevvakfaqlgfpssfvrllGv..vellgalgLllp 55
                 vl+++ff ++G+  +++ +e+v+ +  +g+p  ++++ G+  ++l+g ++++  
  CTQ28578.1 15 RVLVTFFFWMAGIYGVFHFAEIVQEMVTVGLPWPVLFAAGTifCQLAGSALIVFN 69
                699**********************************999644799999988743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1021.21
//
Query:       CTQ28579.1  [L=210]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-26   90.9   1.3    6.1e-25   87.6   0.1    2.1  2  TetR_C_7     AefR-like transcriptional repressor, C-terminal 
    4.3e-15   55.2   0.9    9.1e-15   54.2   0.9    1.6  1  TetR_N       Bacterial regulatory proteins, tetR family
    5.3e-05   23.4   1.5    0.00011   22.3   1.5    1.5  1  TetR_C_6     BetI-type transcriptional repressor, C-terminal
     0.0016   18.7   1.0     0.0016   18.7   1.0    1.7  2  TetR_C_11    Tetracyclin repressor-like, C-terminal domain
     0.0052   16.9   0.0     0.0083   16.3   0.0    1.3  1  HTH_Tnp_1_2  Helix-turn-helix of insertion element transposas
  ------ inclusion threshold ------
      0.022   14.8   0.0      0.042   13.9   0.0    1.5  1  TetR_C_27    Tetracyclin repressor-like, C-terminal domain
      0.032   14.7   0.0        6.7    7.2   0.0    2.6  2  STPPase_N    Serine-threonine protein phosphatase N-terminal 
      0.077   12.9   0.0       0.18   11.7   0.0    1.6  1  TOBE_3       TOBE-like domain
      0.085   13.2   0.1        1.8    9.0   0.0    2.3  2  TetR_C_25    Tetracyclin repressor-like, C-terminal domain
       0.11   12.8   0.0       0.32   11.3   0.0    1.8  1  TetR_C_24    Tetracyclin repressor-like, C-terminal domain
       0.11   12.3   0.0       0.32   10.9   0.0    1.7  2  PT-TG        Pre-toxin TG


Domain annotation for each model (and alignments):
>> TetR_C_7  AefR-like transcriptional repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.062     1e+02      26      81 ..      36      88 ..      31      90 .. 0.79
   2 !   87.6   0.1   3.7e-28   6.1e-25       1     118 [.      89     206 ..      89     207 .. 0.99

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.062
                HHHHHHT-HHHHCCHHHT.T----HHHHHHHHHHHHTTSB-SS-HHHHHHHHHHHH CS
    TetR_C_7 26 viaeaerfPelarafyeagpgrveealaayLeaavaaGrLridDpelAAeqflgll 81
                ++ae  r   +a+a + a  +  e+ ++a+L++++    L+i D ++A ++ l l+
  CTQ28579.1 36 TTAEIARVAGVAKATLYANFSDKEHLIEAVLRQES---DLTISDHDFAQRHHLPLI 88
                56788888888888888877888888888887776...59**********998877 PP

  == domain 2  score: 87.6 bits;  conditional E-value: 3.7e-28
                 HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHT-HHHHCCHHHT.T----HHHHHHHHHHHHTTSB-SS-HHHHHHHHHHHHHHHHTHHHHHH------H CS
    TetR_C_7   1 eqLtalgrallalllspevlalaRlviaeaerfPelarafyeagpgrveealaayLeaavaaGrLridDpelAAeqflgllkgelfwprlfgveeppse 99 
                 e+Lta+g +++++++++e +   Rl+ ++a r P+l  +fy+agpgr++++l+a++++a +aG+Lr+ Dp+ AA+ ++gl  g +     +g+ +p+s+
  CTQ28579.1  89 EVLTAFGYRFVRFINQRELTGWDRLIASAAVRHPDLPGRFYAAGPGRAQQMLEAIIAEAIEAGTLRACDPQEAADELAGLWLGMTSLAIKLGARPPLSD 187
                 68************************************************************************************************* PP

                 HHHHHHHHHHHHHHHHHHB CS
    TetR_C_7 100 eeiervvesaVdmFlaaYg 118
                 +ei++ ve+a d+Fl+aY 
  CTQ28579.1 188 DEIKQRVERALDVFLRAYS 206
                 ******************5 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.9   5.6e-18   9.1e-15       1      47 []      20      65 ..      20      65 .. 0.98

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 5.6e-18
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                Il aAr+lf e+G + +t++eIA+ AGv+k++lY  F++Ke L+ea+
  CTQ28579.1 20 ILQAARKLFLEQGLE-VTTAEIARVAGVAKATLYANFSDKEHLIEAV 65
                9**************.99***************************97 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   1.5     7e-08   0.00011      31     113 ..     116     201 ..     102     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 7e-08
                 HHHTT-HHHHHHHHHH.HHHHHHHHHHHHHHHHHTTSCTTSTHHHHHHHHHHHHHHH.HHHHHHTC.TTCHHHHHHHHHHHHHHHH CS
    TetR_C_6  31 aeaardpelaelqren.yarlrsnlrallaelaegglradadaeaaAerlaAlidGL.wlraalap.eeldaeraralvrrhldal 113
                 ++a+r+p+l  ++ ++   r +++l a++ae+ e+g++++ d+++aA++la l  G+ +l   l+  ++l+ +++ + v+r ld  
  CTQ28579.1 116 SAAVRHPDLPGRFYAAgPGRAQQMLEAIIAEAIEAGTLRACDPQEAADELAGLWLGMtSLAIKLGArPPLSDDEIKQRVERALDVF 201
                 45699999987755555*****************99********************963443344348999999999999999865 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       3.4   5.6e+03      62      62 ..      38      38 ..      17      68 .. 0.54
   2 !   18.7   1.0   9.9e-07    0.0016      13      91 ..      93     170 ..      88     197 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.4
   TetR_C_11 62 a 62
                a
  CTQ28579.1 38 A 38
                2 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 9.9e-07
   TetR_C_11  13 allralaealaspragallrallaeaqrdpelaealrerlleprraalravlrrAvarGelradadvelvldlllgpll 91 
                 a+  ++++++++++ +   r ++++a r+p+l  ++ ++   + ++ l+a+++ A++ G lra  d++ ++d l+g++l
  CTQ28579.1  93 AFGYRFVRFINQRELTGWDRLIASAAVRHPDLPGRFYAAGPGRAQQMLEAIIAEAIEAGTLRA-CDPQEAADELAGLWL 170
                 55556777777777777778888999************778888999***************9.888888887777665 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.1e-06    0.0083      14      68 ..      22      77 ..      10      91 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.1e-06
                 HHH.HHHHHHHH--S-HHHHHHHHTS-HHHHHHHH.H-HHHHHHHHHHHHHHHHTTH CS
  HTH_Tnp_1_2 14 kaa.ellvendyekltldeiaeevgvsrsTlykWk.kkkeFieyvnelaeefleeer 68
                 +aa +l  e+ + ++t++eia+  gv+++Tly    +k++ ie v ++ ++++ ++ 
   CTQ28579.1 22 QAArKLFLEQGL-EVTTAEIARVAGVAKATLYANFsDKEHLIEAVLRQESDLTISDH 77
                 454156689999.99*****************766599999*999998888876665 PP

>> TetR_C_27  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.6e-05     0.042      47      75 ..     135     163 ..     133     194 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHHHHHHCT-STT--HHHHHH CS
   TetR_C_27  47 eleeqlaeIireGvaaGeFkaadpeaaar 75 
                 +++++l+ Ii+e+++aG+ +a dp++aa 
  CTQ28579.1 135 RAQQMLEAIIAEAIEAGTLRACDPQEAAD 163
                 57899*********************996 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0041       6.7      28      41 ..      18      31 ..      14      32 .. 0.93
   2 ?    4.4   0.0     0.032        52      18      40 ..     181     203 ..     170     206 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0041
   STPPase_N 28 rqlCakareiFLsQ 41
                ++++++ar++FL+Q
  CTQ28579.1 18 QAILQAARKLFLEQ 31
                689**********9 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.032
   STPPase_N  18 kkvqLseaEIrqlCakareiFLs 40 
                  + +Ls +EI+q + +a ++FL+
  CTQ28579.1 181 ARPPLSDDEIKQRVERALDVFLR 203
                 5678*****************95 PP

>> TOBE_3  TOBE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.18       4      42 ..      30      69 ..      29      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
      TOBE_3  4 egglpatvrrirpvGpivRlELerl.gdtgeliEvelprd 42
                e+gl++t + i +v++++ + L  +  d ++liE+ l  +
  CTQ28579.1 30 EQGLEVTTAEIARVAGVAKATLYANfSDKEHLIEAVLRQE 69
                79***********************999********9876 PP

>> TetR_C_25  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.16   2.6e+02      72     101 ..      66      92 ..      34      94 .. 0.77
   2 ?    9.0   0.0    0.0011       1.8      33      81 ..     141     190 ..     136     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.16
   TetR_C_25  72 lheeedptdlravlreylermvlPalElyt 101
                 l++   ++dl+   +++++r  lP +E+ t
  CTQ28579.1  66 LRQ---ESDLTISDHDFAQRHHLPLIEVLT 92 
                 444...77888888999**********988 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
   TetR_C_25  33 eayleegvaaGtirpsrdpkarArylalsslGalllelqlhe..eedptdl 81 
                 ea+++e+++aGt+r   dp++ A  la   lG++ l+++l +  + + +++
  CTQ28579.1 141 EAIIAEAIEAGTLRA-CDPQEAADELAGLWLGMTSLAIKLGArpPLSDDEI 190
                 7899*********97.699999*****999999999999877334444444 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019      0.32      51      80 ..     136     165 ..     131     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHHHTTSB-SS-HHHHHHHH CS
   TetR_C_24  51 yerllrdlieeGvaagefedldpklaalai 80 
                  +++l+++i+e+++ag+++++dp+ aa  +
  CTQ28579.1 136 AQQMLEAIIAEAIEAGTLRACDPQEAADEL 165
                 5899*******************9998655 PP

>> PT-TG  Pre-toxin TG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.5   7.3e+03      41      47 ..      42      48 ..      32      56 .. 0.51
   2 ?   10.9   0.0    0.0002      0.32      31      48 ..     102     119 ..     101     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.5
       PT-TG 41 Rllaava 47
                R+++++ 
  CTQ28579.1 42 RVAGVAK 48
                3333332 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0002
       PT-TG  31 iTGeklsdwdRllaaval 48 
                 i++++l++wdRl+a++a+
  CTQ28579.1 102 INQRELTGWDRLIASAAV 119
                 7899***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1709.04
//
Query:       CTQ28580.1  [L=394]
Description: L-lactate dehydrogenase, FMN-linked [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.2e-123  412.6   0.5   1.4e-123  412.4   0.5    1.0  1  FMN_dh        FMN-dependent dehydrogenase
    1.2e-07   31.5   0.2    1.8e-07   30.9   0.2    1.2  1  NMO           Nitronate monooxygenase
    4.7e-05   22.6   0.1    0.00012   21.2   0.1    1.7  2  IMPDH         IMP dehydrogenase / GMP reductase domain
  ------ inclusion threshold ------
       0.01   15.0   0.0      0.017   14.3   0.0    1.2  1  IGPS          Indole-3-glycerol phosphate synthase
      0.022   13.9   0.6      0.035   13.3   0.6    1.3  1  Glu_synthase  Conserved region in glutamate synthase
        0.2   10.9   2.7        4.5    6.5   0.4    2.8  3  ThiG          Thiazole biosynthesis protein ThiG
       0.21   10.6   0.1       0.31   10.1   0.1    1.1  1  B277          Domain of unknown function


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.4   0.5  5.3e-127  1.4e-123       1     346 [.      13     375 ..      13     377 .. 0.98

  Alignments for each domain:
  == domain 1  score: 412.4 bits;  conditional E-value: 5.3e-127
                 HHCCS-HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS CS
      FMN_dh   1 ArkrlpkkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvast 99 
                 Ar+rlp++ f+y++gga  e t+++n a++ +++lr+rvl ++ ++ l+tt+l+ ++++Pv ++Pvg++++++++ge+++araa++agip++lstv+ +
  CTQ28580.1  13 ARRRLPRFLFDYIDGGAVAENTMNANAAELASVALRQRVLCGAGEPTLATTILDAPWAMPVALGPVGATGMYARRGEVQAARAASRAGIPYTLSTVSVC 111
                 89************************************************************************************************* PP

                 -HHHHHHHHTT-EEEEEE-CSSHHHHHHHHHHHHHCTESEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH............. CS
      FMN_dh 100 sleevaaaaegplwfqlyvpkdrelteellkraeaagykalvltvDtpvlgkRerdlrngfslppklklrnllqelakpewaaeal............. 185
                 s+eeva++a g lw qlyv kdr  +++ l+ra+aag+k+lv+tvD+p++g R rd r+g+s p + +lr++lq+ ++p+wa+++              
  CTQ28580.1 112 SIEEVASHASGALWSQLYVLKDRGYMRNALERAWAAGMKTLVFTVDMPIPGSRYRDNRSGMSGPHA-TLRQYLQACTHPRWAMNVGlagrplsfgniea 209
                 *******9999*************************************************998877.99****************************** PP

                 .......THHHHHHCCCHB-TC--HHHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS CS
      FMN_dh 186 .....kkasaaaefvgkqldpsltwddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavggrievlvDgG 279
                      +++ + + f+++ +dps+ w+d++w+r+ ++++l++KG+l+a+da++av++G+dgivvSNHGGRqldga++t ++Lp++v+avg++++vl+D+G
  CTQ28580.1 210 ytghkMTMDDYMGFISNNFDPSIAWHDLEWIRDSWQGKLIIKGILDADDARNAVRLGADGIVVSNHGGRQLDGAIPTARALPRVVDAVGDDLTVLADSG 308
                 *98755555666*************************************************************************************** PP

                 --SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHCGGE CS
      FMN_dh 280 irrGsDvlkAlalGAdavllGRpflyglaagGeeGvervleilraelertmallGvksvaeldrsll 346
                 +r+G+Dv++ lalGA++vllGR+++y+laa+Ge+Gv+++l+++ ++++ tm+l+G++s + ++ ++l
  CTQ28580.1 309 VRSGVDVIRLLALGAKGVLLGRAYIYALAAAGEAGVAHLLRLFAEDMKVTMTLTGATSPSAISLDCL 375
                 ***********************************************************99998876 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.2   7.1e-11   1.8e-07     135     273 ..     245     380 ..     223     393 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 7.1e-11
         NMO 135 agvvliptissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavd..iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkes 231
                  g ++i  i  +++ar + ++GaD ++v  ++ GG q + ++    + + +p+v+dav   + v+A  G+  + +v   LalGA+gv +g +++ +  +
  CTQ28580.1 245 QGKLIIKGILDADDARNAVRLGADGIVV--SNHGGRQLDGAI---PTARALPRVVDAVGddLTVLADSGVRSGVDVIRLLALGAKGVLLGRAYIYALAA 338
                 566778889999****************..589999986666...599**********778*********************************88766 PP

         NMO 232 dakdahkkklleaklddteltsavsGrpaRalatelleelee 273
                   ++ + + l    +d  +  +  +  +  a+  + l +le+
  CTQ28580.1 339 AGEAGVAHLLRLFAEDMKVTMTLTGATSPSAISLDCLDRLEQ 380
                 554444444444444433333333334566777777777776 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       0.7   1.8e+03     286     329 ..      77     120 ..      71     126 .. 0.86
   2 !   21.2   0.1   4.7e-08   0.00012     135     245 ..     236     342 ..     225     389 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.7
                 -SBEEEEEE--B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 286 peGvegrvpykgsvkevveqlvgglrsgmgylGaktieelkeka 329
                 p G  g+ + +g+v++      +g+  +++ + + +iee+ ++a
  CTQ28580.1  77 PVGATGMYARRGEVQAARAASRAGIPYTLSTVSVCSIEEVASHA 120
                 67889999999999999999999999999999999999987765 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 4.7e-08
                 HHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 135 avkeikkkveeveviaGnvataegakaLieagadavkvGiGpGsiCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadav 233
                  +++i+++++  ++i   + +a+ a++ ++ gad++ v    G     r + g+ +p + A+ +v++a+   + +v+aD G+++  d+++ la+Ga+ v
  CTQ28580.1 236 DLEWIRDSWQ-GKLIIKGILDADDARNAVRLGADGIVVSNHGG-----RQLDGA-IPTARALPRVVDAVG-DDLTVLADSGVRSGVDVIRLLALGAKGV 326
                 5788998885.55555558999999999999999999977766.....888885.999******999875.589************************* PP

                 EESCC....CTTBTTS CS
                 xxxxx....xxxxxxx RF
       IMPDH 234 mlGsl....lagteEs 245
                 +lG+     la+  E+
  CTQ28580.1 327 LLGRAyiyaLAAAGEA 342
                 ***8622224555554 PP

>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   6.5e-06     0.017     166     241 ..     254     332 ..     245     339 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.5e-06
                 SSHHHHHHHHHTT-SEEEEESEETTTTEE-CHHHHHHCHCC-...TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHH CS
        IGPS 166 hdeeeleralklgakiiGvNnRnLktlevdlntteeLaklvp...kdvllvaeSGiktredveklkeegvnafLvGesl 241
                  d+++   a++lga+ i v n   ++l+  + t + L  +v+   +d ++ a SG+++  dv +l + g++++L G + 
  CTQ28580.1 254 LDADDARNAVRLGADGIVVSNHGGRQLDGAIPTARALPRVVDavgDDLTVLADSGVRSGVDVIRLLALGAKGVLLGRAY 332
                 57788899*************99999999999999998888766588*****************************985 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.6   1.3e-05     0.035     258     310 ..     283     336 ..     253     342 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
                   HHHHHHHHHH.HTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHHT CS
  Glu_synthase 258 alaevdqtlk.eeglrdrvsliadGglktgadvvkalalGAdavgigtaalial 310
                   a++ +    +    + d +++ ad g+++g+dv+  lalGA  v +g+a + al
    CTQ28580.1 283 AIPTARALPRvVDAVGDDLTVLADSGVRSGVDVIRLLALGAKGVLLGRAYIYAL 336
                   4444443322023467899*****************************988776 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.38   9.7e+02      23      58 ..      30      64 ..      26      99 .. 0.73
   2 ?    3.5   0.0     0.015        38     178     205 ..     248     274 ..     232     296 .. 0.71
   3 ?    6.5   0.4    0.0017       4.5     169     206 ..     292     331 ..     281     348 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.38
                HHHHHHHHHT-SEEEEECCGSTTTS.TTS--CCCCC CS
        ThiG 23 vlkeaveasgaeivtvalrRvnleekaseeellell 58
                v +++++a  ae+  valr   l   a+e++l+ ++
  CTQ28580.1 30 VAENTMNANAAELASVALRQRVLCG-AGEPTLATTI 64
                5677888888999999998766655.4555555554 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.015
                 BEEES---SHHHHHHHHHTT-SEEEESH CS
        ThiG 178 vivDAGigspsdaaqamelGadavllnt 205
                 +i+  Gi  + da +a+ lGad++++  
  CTQ28580.1 248 LII-KGILDADDARNAVRLGADGIVVSN 274
                 555.49999**************99864 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0017
                 HHHHH-..SS-BEEES---SHHHHHHHHHTT-SEEEESHH CS
        ThiG 169 iiieea..kvPvivDAGigspsdaaqamelGadavllnta 206
                  +++ +  ++ v+ D G++s  d++  + lGa++vll  a
  CTQ28580.1 292 RVVDAVgdDLTVLADSGVRSGVDVIRLLALGAKGVLLGRA 331
                 555555557899************************9876 PP

>> B277  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00012      0.31     205     266 ..     305     369 ..     285     373 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00012
        B277 205 alarvgsgpdlmmliigvvmgigigvaigfgian...anlthllsqhvtnttvthttttttspsf 266
                 a + v sg d++ l+     g+ +g a  + +a    a ++hll     +  vt t t +tsps 
  CTQ28580.1 305 ADSGVRSGVDVIRLLALGAKGVLLGRAYIYALAAageAGVAHLLRLFAEDMKVTMTLTGATSPSA 369
                 4456889***9999988889999999999998862226799**********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3226.14
//
Query:       CTQ28581.1  [L=1030]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.2e-147  491.5   4.4   5.5e-147  491.1   4.4    1.0  1  ACR_tran      AcrB/AcrD/AcrF family
     0.0035   17.0   1.1     0.0035   17.0   1.1    2.7  3  ABC_membrane  ABC transporter transmembrane region
  ------ inclusion threshold ------
      0.051   13.9   0.0       0.14   12.5   0.0    1.7  1  HTH_55        RctB helix turn helix domain


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  491.1   4.4  9.2e-151  5.5e-147       2    1019 ..       9    1011 ..       8    1012 .. 0.93

  Alignments for each domain:
  == domain 1  score: 491.1 bits;  conditional E-value: 9.2e-151
                  HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS- CS
    ACR_tran    2 ikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtd 98  
                  ++++++ + ++l l ++i ++G ++++ l  ++ P ++  + +v t  pGa +++++++v++plE+ l+ l+  + ++  ++ g + itl+ +d+t+
  CTQ28581.1    9 SALAVRERSVTLFLIILISVAGLVAFFGLGRAEDPPFTVKQMTVITVWPGATAQEMQDQVAEPLEKRLQELKWYDRTETYTRPGMALITLSLQDQTP 105 
                  6789999*****************************************************************************************9 PP

                  HHHHHH...HHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHH CS
    ACR_tran   99 idiArq...qvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqk 192 
                  + +  +   q  ++l    ++LP +v+ p ++ ++ ++ +   +a+++  g+ + + +rd  ++ +++qL +v+GV +v++ G++ + + +  + ++
  CTQ28581.1  106 PSEVPEqfyQARKKLGDEAKNLPAGVSGPMMN-DEFADVTFALFALKAR-GEPPRQLVRD--AEALRQQLLHVSGVKKVNILGEQAERIYLSFSHDR 198 
                  987655122567889999999*****666655.5566667777888888.7777777776..5789*****************8888888888999* PP

                  HHCTT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEEETTSCEEEHHHCEEEEEEESSSSSEE.EETTEEEEEEEEEEET CS
    ACR_tran  193 laklgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivknqdgskvrlrDvAkVelgaeeerlaa.tfngkpavllevkklp 288 
                  la lgl+++ ++ al++qnv  aaG++e ++ ++ ir  g++   ++i++  +  + g  ++l DvA+Ve g e+ +++  + +g+pa ll+v ++ 
  CTQ28581.1  199 LATLGLSPEAIFAALNSQNVLTAAGAIETRGGQIFIRLDGAFDRLQQIRDTPI-IAGGRTLKLADVATVERGYEDPATFLiRHQGEPALLLGVVMRE 294 
                  **************************************************999.89*******************9887527889************ PP

                  TSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCH CS
    ACR_tran  289 ganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNl 385 
                  g n ++  ka +++ ++++++lP g++++ v d++  ++a+++e   + ++a+++v+ v f+  + +r  +++a avPl l + f+v++a g     
  CTQ28581.1  295 GWNGLALGKALDAETASINQNLPLGMSLTKVTDQSVNISAAVDEFMIKFFVALLVVMAVCFVS-MGWRVGVVVAAAVPLTLAVVFVVMAATGKNFDR 390 
                  **************************************************9987777777776.56******************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCH CS
    ACR_tran  386 ltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltlt 482 
                  +tL+ L lA Gl+vDdAi+ +E ++ k+ee g ++l+a++++ +  + +++a++lv    f+P  f + + G+   +    + +a+++s +va+++t
  CTQ28581.1  391 ITLGSLILALGLLVDDAIIAIEMMVVKMEE-GYDRLKASAYAWSHTAAPMLAGTLVTALGFMPNGFAQSTAGEYASNVFWIVGIALIASWIVAVIFT 486 
                  ******************************.****************************************************************** PP

                  HHHHHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB-HHHHHHH CS
    ACR_tran  483 PalcallLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgvsleqtqkv 579 
                  P l   lL  rk   ++    +         +++++ll +v+ h+++v + ++ l+++ +l ++ + k+f+P  d+ ++++ vqlp g+s++qt+++
  CTQ28581.1  487 PWLGVHLLPDRKPAAAG----HAALYDTPRYQRFRRLLTRVIVHKWRVAAGVVALFIVAILGMSVVKKQFFPTSDRPEVLVEVQLPYGSSISQTSAA 579 
                  ********999997764....3333334457899*************************************************************** PP

                  HHHHHHHHHTTTTEEEEEEEECECS...SE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTT..STSSEEEEEETTSSCCCSSSSCEEE CS
    ACR_tran  580 lkqvekilkekpevesvfavtGfae...sgdtagpnsakvfisLkpekerkeeeksvealierlrkelkk..ipganvellapiqlreletlsgvrs 671 
                   +++e+ l+ +pe + v++  G      +   a+     +f +L   ++    +  +eal +rlr+++++   p+a+   + + ql +      +  
  CTQ28581.1  580 AAKIEHWLQRQPEAKIVTSYIGQGAprfYLAMAPELPDPSFAKLVVLTDG---QGAREALKRRLREAVANglAPEAR---VRVTQLVF---GPYSPY 667 
                  ******************99997543235556666777788888888866...778888888888888762234444...33344444...788889 PP

                  EEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE-GGG CS
    ACR_tran  672 elqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvrleedl 768 
                   ++  ++g d +aL  +a++++++l+++p +  v++++ +++p ++ + +++++++ G+s + + + l+  l+g  ++++ e+ r v+v+ r+  d 
  CTQ28581.1  668 PVAWRVMGPDPHALLDIADRVKSVLQASPLMRTVNTDWGSRVPVMHFSLNQDRLQASGLSSQSVAQQLQFLLSGIPITTVREDIRAVQVIGRAAGDI 764 
                  999999******************************************************************************************* PP

                  SSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT....SSTTEEEEEEHHHHHHHHHHCH CS
    ACR_tran  769 rsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkv..klpegvtiewtgqaeqeqeasns 863 
                  r +p ++++  +  + g+ vpls++  ++ ++  + + r ++ ++++++g+vae+    ++++a +k  + +  +lp+g++ie +g+ e+  +a+  
  CTQ28581.1  765 RLDPAKIADFTLVGSGGQRVPLSQIGDVSIRMEDPLLRRRDRTPTITVRGDVAENLQPPDVSTALMKPLQPIidSLPPGYRIETAGSIEESGKATRA 861 
                  *******************************************************99999999998888876556********************** PP

                  HHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHH CS
    ACR_tran  864 llilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaileaak 960 
                  ++ l+++ + l  l++ +++ sls+ ++++lt Pl+l+G +  lll+++++ + a+vGli+l G+ ++N ++l+  +++ ++  g+++  a++ea  
  CTQ28581.1  862 MVPLFPIMIALTLLIIILQVRSLSAMVMVFLTAPLGLIGVVPTLLLFNQPFGINALVGLIALSGILMRNTLILIGQIHHNQQ-AGLDPFHAVVEATV 957 
                  ******************************************************************************9999.9************* PP

                  HCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  961 eRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvl 1019
                  +R rP+L+Talaail ++PL  s   G      l+ +++gG +  t++tL ++P++Y++
  CTQ28581.1  958 QRARPVLLTALAAILAFIPLTHSVFWG-----TLAYTLIGGTLGGTIMTLIFLPAMYAI 1011
                  *********************999888.....59***********************86 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.1   5.8e-07    0.0035      81     170 ..     301     389 ..     289     392 .. 0.83
   2 ?   -3.1   1.0      0.79   4.7e+03     127     148 ..     465     486 ..     456     494 .. 0.54
   3 ?   -7.8   5.3         3   1.8e+04     126     152 ..     868     894 ..     859     907 .. 0.49

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.8e-07
                   HHHHHCSTHHHHHH.SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH.HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  81 fkkilrqpmsffdt.nsvGellsrltndvsklrdglgeklglffqslltfvgglivmfy.lgwkltlvllailpliilvsaviakilkklkk 170
                   + k l ++++ +++  + G  l+++t++  +++ ++ e+++ ff +ll++++++    + +gw++ +v+ a +pl + v +v++  + k+++
    CTQ28581.1 301 LGKALDAETASINQnLPLGMSLTKVTDQSVNISAAVDEFMIKFFVALLVVMAVCF---VsMGWRVGVVVAAAVPLTLAVVFVVMAATGKNFD 389
                   667788888888886889********************99888877766665554...448******************9999998887765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.79
                   HHHHHHHHHHHHHSHHHHHHHH CS
  ABC_membrane 127 ltfvgglivmfylgwkltlvll 148
                   ++++ +++++++ +w ++++ +
    CTQ28581.1 465 SNVFWIVGIALIASWIVAVIFT 486
                   4445555555555555544433 PP

  == domain 3  score: -7.8 bits;  conditional E-value: 3
                   HHHHHHHHHHHHHHSHHHHHHHHHHHH CS
  ABC_membrane 126 lltfvgglivmfylgwkltlvllailp 152
                   +++ +++li+++ +    ++v+++++ 
    CTQ28581.1 868 IMIALTLLIIILQVRSLSAMVMVFLTA 894
                   344444444444433333333333333 PP

>> HTH_55  RctB helix turn helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.4e-05      0.14      54      90 ..     621     657 ..     616     663 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.4e-05
      HTH_55  54 telieatdgkltraaiqqrlraavsiglfeqlpvrfe 90 
                 ++l+  tdg+ +r a+++rlr av+ gl  +  vr  
  CTQ28581.1 621 AKLVVLTDGQGAREALKRRLREAVANGLAPEARVRVT 657
                 678999**********************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1030 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1013  (0.0565006); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.42
# Mc/sec: 7299.08
//
Query:       CTQ28582.1  [L=369]
Description: Efflux transporter, RND family, MFP subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-12   47.6   4.2    1.8e-12   47.0   4.2    1.2  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    1.8e-11   44.6   2.1    4.5e-08   33.7   0.3    2.8  2  HlyD_3           HlyD family secretion protein
    1.3e-08   34.5  14.1    1.7e-07   30.9   1.1    2.9  3  Biotin_lipoyl_2  Biotin-lipoyl like
    0.00022   21.0   0.1       0.28   11.0   0.2    2.4  2  Biotin_lipoyl    Biotin-requiring enzyme
     0.0031   17.2   0.0       0.14   11.9   0.0    2.3  2  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
  ------ inclusion threshold ------
      0.022   14.5   0.0      0.052   13.3   0.0    1.6  1  SHOCT            Short C-terminal domain
      0.098   12.9   0.1        8.9    6.6   0.0    2.5  2  Peptidase_M23    Peptidase family M23


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   4.2     7e-16   1.8e-12      17     202 ..      59     261 ..      50     265 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 7e-16
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......................XXXXXXXXXXXXXXXX CS
    HlyD_D23  17 rrlarvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalkakkklkkke......................lleaarerLrllgvse 93 
                 r+++++  rv+G v + +v+ tg++Vk+Gq L++l+  +l+   +    a +a+++ +kk                       +++aa+e     ++s+
  CTQ28582.1  59 RTQSDLGFRVAGKVLERRVE-TGQSVKRGQLLLRLDPADLALQAQSQQRAVDAARARAKKAandlaryrglvasgaisaaefdQINAAAEAA-RADLSA 155
                 56778889************.*******************75444444444444444333346799999**999998888887444444433.245555 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  94 eqiaelektgkvqktvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyptvdpet 192
                 +q a+ +  ++++ +  + a ++GvV+e  +  Gq+v++g++++++a   +    ++++e+  + v  g+++ +t    + + +++++  +++  d++t
  CTQ28582.1 156 AQ-AQANVAQNATGYAGLLADADGVVVETLAEPGQVVSAGQVVIRLARAGQREARVQLPETLRPAV--GSEALATRYGSESQPVTATLRLLSDAADATT 251
                 55.44455566677788999****************************************998876..88999999999******************** PP

                 XXXXXXXXXX CS
    HlyD_D23 193 RtvkvRield 202
                 Rt+++R++l+
  CTQ28582.1 252 RTFEARYVLN 261
                 ******9986 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00063       1.6       6      37 ..      68      98 ..      67     120 .. 0.82
   2 !   33.7   0.3   1.8e-11   4.5e-08       2      93 ..     172     260 ..     171     294 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00063
      HlyD_3  6 vdGvvvelnveegevvqagdelleiippdtll 37
                v+G+v e  ve g+ v +g+ ll++ p ++l+
  CTQ28582.1 68 VAGKVLERRVETGQSVKRGQLLLRLDP-ADLA 98
                79**********************986.4444 PP

  == domain 2  score: 33.7 bits;  conditional E-value: 1.8e-11
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktgaykvevsl 93 
                 l A  dGvvve  +e+g+vv+ag+++ +++   + ++++++p++ ++ + ++  ++++    +  +++++++  +s+ +da+t++++++  l
  CTQ28582.1 172 LLADADGVVVETLAEPGQVVSAGQVVIRLARAGQREARVQLPETLRPAVGSEALATRY-G--SESQPVTATLRLLSDAADATTRTFEARYVL 260
                 57999******************************************99643333333.3..34469*****************99987654 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   1.1   6.7e-11   1.7e-07       8      46 ..      67     105 ..      61     122 .. 0.84
   2 ?   -3.1   1.1       2.8   7.2e+03      41      49 ..     154     162 ..     145     163 .. 0.66
   3 !   12.9   0.3   2.9e-05     0.073       7      33 ..     174     200 ..     172     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 6.7e-11
  Biotin_lipoyl_2   8 pvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqae 46 
                      +v+G+V + +V+ Gq Vk G++L++lD+ +l+l+ +  +
       CTQ28582.1  67 RVAGKVLERRVETGQSVKRGQLLLRLDPADLALQAQSQQ 105
                      79******************************6655433 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.8
  Biotin_lipoyl_2  41 alaqaeaql 49 
                        aqa+a++
       CTQ28582.1 154 SAAQAQANV 162
                      446777776 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 2.9e-05
  Biotin_lipoyl_2   7 apvsGrVaqlnVkdGqrVkaGdvLael 33 
                      a+ +G+V++ + + Gq+V aG+v ++l
       CTQ28582.1 174 ADADGVVVETLAEPGQVVSAGQVVIRL 200
                      688********************9987 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0014       3.7      12      35 ..      68      91 ..      60      95 .. 0.67
   2 !   11.0   0.2   0.00011      0.28      47      73 .]     174     200 ..     170     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0014
                   EEE..ECSESSSTTCEE-TTSEEEE CS
  Biotin_lipoyl 12 veeg.vvevlvkvGdkVkagqvlae 35
                   v+ g v+e  v++G++Vk gq l+ 
     CTQ28582.1 68 VA-GkVLERRVETGQSVKRGQLLLR 91
                   33.4566677777777777777765 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00011
                    BSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  47 apkaGvvkeilvkeGdtvevgdllaki 73 
                    a+++Gvv+e l++ G+ v++g++++++
     CTQ28582.1 174 ADADGVVVETLAEPGQVVSAGQVVIRL 200
                    789999999999999999999999875 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   5.6e-05      0.14      79     113 ..      68     102 ..      65     111 .. 0.86
   2 ?    2.7   0.0     0.038        97      80     106 ..     177     203 ..     173     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.6e-05
                 TTTTTEEES----SEE-SEEEEEEE-HHHHGGGSS CS
  PTS_EIIA_1  79 lkgegFellvkegdkVkagdklvevdleaikkagy 113
                 + g++ e  v++g++Vk+g++l+++d++ ++ ++ 
  CTQ28582.1  68 VAGKVLERRVETGQSVKRGQLLLRLDPADLALQAQ 102
                 5799999********************99876665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.038
                 TTTTEEES----SEE-SEEEEEEE-HH CS
  PTS_EIIA_1  80 kgegFellvkegdkVkagdklvevdle 106
                 +g + e+l++ g+ V+ag+ ++++  +
  CTQ28582.1 177 DGVVVETLAEPGQVVSAGQVVIRLARA 203
                 67778999*************998766 PP

>> SHOCT  Short C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     2e-05     0.052       3      22 ..     122     141 ..     121     142 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
       SHOCT   3 LekLkeLyarGeIteEEFea 22 
                 L++++ L a+G+I+ +EF++
  CTQ28582.1 122 LARYRGLVASGAISAAEFDQ 141
                 789999************98 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0035       8.9      23      69 ..      41      89 ..      37      93 .. 0.69
   2 ?    3.5   0.0     0.031        80      41      73 ..     165     201 ..     135     216 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0035
                   EEEEEEE.ETTT.EEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEE CS
  Peptidase_M23 23 tVvfagk.kegy.GnvviidhgdgystlyahlskisvkegqkVkaGqvI 69
                   tV  a+  ++++ G vv  +++d  + + + + + +v++gq Vk+Gq +
     CTQ28582.1 41 TVERAEAsSRAFtGVVVARTQSDLGFRVAGKVLERRVETGQSVKRGQLL 89
                   566666633344355555555555677777777889**********975 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.031
                    ECTCEEEEEEEESEESS-....TTEEE-TTCEEEEEB CS
  Peptidase_M23  41 hgdgystlyahlskisvk....egqkVkaGqvIGtvg 73 
                     ++gy  l a  + + v+    +gq V+aGqv+ +  
     CTQ28582.1 165 NATGYAGLLADADGVVVEtlaePGQVVSAGQVVIRLA 201
                    4555666666666655444444888888888875554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2971.42
//
Query:       CTQ28583.1  [L=204]
Description: TetR family transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-14   50.9   1.3    2.4e-13   49.6   1.3    1.7  1  TetR_N     Bacterial regulatory proteins, tetR family
    7.6e-12   45.2   0.0    1.2e-11   44.7   0.0    1.3  1  TetR_C_27  Tetracyclin repressor-like, C-terminal domain
     0.0047   17.2   0.3       0.22   11.8   0.2    2.2  2  TetR_C_24  Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
      0.061   12.9   0.1       0.14   11.7   0.0    1.6  2  OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS famil
       0.11   12.6   0.1        1.2    9.2   0.1    2.2  1  TetR_C_4   YsiA-like protein, C-terminal region
       0.13   12.1   0.0       0.33   10.8   0.0    1.7  1  WIYLD      Ubiquitin-binding WIYLD domain


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   1.3     8e-17   2.4e-13       1      46 [.      22      67 ..      22      68 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 8e-17
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLlea 46
                IldaA++ f+++Gy++ttv ++Ak+ G sk+ +Y+ F+sK+++ ea
  CTQ28583.1 22 ILDAAMAHFSRYGYEKTTVTDLAKAIGFSKAYIYKFFDSKQAIGEA 67
                9****************************************99776 PP

>> TetR_C_27  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   3.9e-15   1.2e-11       1      93 [.      90     183 ..      90     192 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 3.9e-15
                 HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCT-STT--H.HHHHHHHHHHSGGGTSHHHHHHH CS
   TetR_C_27   1 AeerLrewlaalfeakrrkarddpelFatyvvlieeelevvekhieeleeqlaeIireGvaaGeFkaadp.eaaaravfdatarfhhPalaaew 93 
                 A+e+Lr++++al ea  + + +d +l+++ +v++++++   e++  +l++++ +I+ eG +aGeF+ + p ++a  av  ++  f++P+ ++  
  CTQ28583.1  90 ASEKLRRLFRALTEAGSELFFEDRKLYDIAAVAARDKWPSTEQYAGHLQQLIGQILVEGRQAGEFERKTPlDEATLAVYMVMCPFINPVQLQYN 183
                 89***************************************************************9887726666678888888****988765 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.1    0.0056        17       7      52 ..      72     117 ..      68     123 .. 0.86
   2 !   11.8   0.2   7.3e-05      0.22       4      81 ..      90     168 ..      89     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0056
                 HHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHHHHHHHHHHHHHH CS
   TetR_C_24   7 rLralvrahveviaeereeaavllrelraLspehreeiralrreye 52 
                 rL++++ a+ e+ia+ +++   l r +raL+++  e + + r+ y+
  CTQ28583.1  72 RLEKIMVAVSEAIADAPSASEKLRRLFRALTEAGSELFFEDRKLYD 117
                 8999999999999999999999999999999999998888888775 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 7.3e-05
                 HHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB.-SS-HHHHHHHHH CS
   TetR_C_24   4 paerLralvrahveviaeereeaavllrelraLspehreeiralrreyerllrdlieeGvaagef.edldpklaalail 81 
                 ++e+Lr+l ra++e+  e + e + l+        ++     +   ++++l+ +++ eG++agef ++   + a+la+ 
  CTQ28583.1  90 ASEKLRRLFRALTEAGSELFFEDRKLYDIAAVAARDKWPSTEQYAGHLQQLIGQILVEGRQAGEFeRKTPLDEATLAVY 168
                 678888888888888888777777777777777788888888999999*****************88888888888775 PP

>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.74   2.2e+03      33      52 ..      27      47 ..      22      72 .. 0.72
   2 ?   11.7   0.0   4.6e-05      0.14      43      73 ..      92     123 ..      64     126 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.74
                HHHHHHHTHH..HHTHHHHHH CS
   OMPdecase 33 ydlvegwgfe.gtgaklaala 52
                ++ ++++g+e +t+ +la+++
  CTQ28583.1 27 MAHFSRYGYEkTTVTDLAKAI 47
                566788888888888888765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.6e-05
                 .HHTHHHHHHHHHT.SEEEEEEEE-S-HHHHH CS
   OMPdecase  43 gtgaklaalarkhg.flifeDrKfaDIGntve 73 
                 + + +l++++ + g  l feDrK+ DI+++++
  CTQ28583.1  92 EKLRRLFRALTEAGsELFFEDRKLYDIAAVAA 123
                 5678999999999999***********99876 PP

>> TetR_C_4  YsiA-like protein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00042       1.2      67      93 ..     134     161 ..      69     176 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00042
                 HHHH.HHHHHHHHHHHHTTSC-TT--HH CS
    TetR_C_4  67 kgyl.tlldeiiaeGkekGefkeeldvr 93 
                  g+l +l+ +i+ eG+++Gef+++ +  
  CTQ28583.1 134 AGHLqQLIGQILVEGRQAGEFERKTPLD 161
                 34542699*************9987654 PP

>> WIYLD  Ubiquitin-binding WIYLD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011      0.33       8      27 ..      23      42 ..      17      47 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
       WIYLD  8 idaAidamkelGfskeqvrp 27
                 daA+ +++++G++k++v+ 
  CTQ28583.1 23 LDAAMAHFSRYGYEKTTVTD 42
                69***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1530.65
//
Query:       CTQ28584.1  [L=331]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-11   44.3   0.3    3.1e-11   43.5   0.3    1.4  1  NAD_binding_10  NAD(P)H-binding
    2.6e-10   40.2   0.0    4.1e-10   39.5   0.0    1.3  1  Epimerase       NAD dependent epimerase/dehydratase family
    1.3e-05   24.4   0.1    0.00032   19.9   0.1    2.4  1  RmlD_sub_bind   RmlD substrate binding domain
    8.3e-05   22.3   0.0    0.00013   21.6   0.0    1.3  1  NmrA            NmrA-like family
    0.00049   19.6   0.1    0.00097   18.6   0.1    1.6  1  adh_short       short chain dehydrogenase
  ------ inclusion threshold ------
       0.19   10.7   0.0       0.27   10.2   0.0    1.1  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.3     1e-14   3.1e-11       1     109 [.      11     118 ..      11     164 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 1e-14
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC...HHHH...HHHHHHHHHHCT CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggk...deeg...aknivdaakeag 89 
                     GA+G++G +++++l+a+ +++v+al R +   +    e+g++ + gd++d  ++a+a +g+d++v a+++ g    ++++    +n+++aa+++ 
      CTQ28584.1  11 GASGGIGGEVARRLVAD-NWQVRALKRGARMRD-P--EDGIQWIAGDALDGGQVAAAAAGCDVIVHAVNPPGYrhwRQQVlpmLRNTLQAAERQ- 100
                     9****************.6*****977665555.4..58*****************************88777666555556677777777764. PP

                     --EEEEEEETTTTSGCGCHH CS
  NAD_binding_10  90 vkRfvlvsaigvgdevpgef 109
                       R ++v    v++  p++f
      CTQ28584.1 101 --RALVVLPGTVYNYGPDAF 118
                     ..444444444444445555 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.4e-13   4.1e-10       1     183 [.       7     170 ..       7     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1.4e-13
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtlnll 99 
                 +l++Ga+G iG  ++++l + +++v +l+r   a+ +  ++ ++++ +d +d+ +++++ +  ++d+++h+    g++++ ++          + +n l
  CTQ28584.1   7 VLILGASGGIGGEVARRLVADNWQVRALKRG--ARMRDPEDGIQWIAGDALDGGQVAAAAA--GCDVIVHAVNPPGYRHWRQQVLP-------MLRNTL 94 
                 79*****************************..4444555566****************99..********998888887777555.......556889 PP

                 HHHHHHTCTEEEEEEEGGGGTSCSSSS.BSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTT CS
   Epimerase 100 eaarkagvkrllflsSsevYGkdaeqp.keettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevs 183
                 +aa ++ +  ++  +++  YG+da  p   e++     +p +  +a  +a+e  +++y + +g +a+i+r    +Gpr g   ++
  CTQ28584.1  95 QAAERQRA-LVVLPGTVYNYGPDAF-PlIAEEA---AQQPVTRKGAIRVAMELALKDYVQRGG-RALIVRAGDFFGPRAG---NN 170
                 99999999.9**************9.8766666...45677778999***********99998.**************33...33 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   1.1e-07   0.00032       2     162 ..       6     174 ..       5     258 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.1e-07
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TTT--TTSHHHHHHHH..HHH--SEEEE------HHHHHHS..HHHHHHHHTH.HHHHHHHHHHHC CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltreeldltdaeavaell..keakpdvvvnaAAytavDkaEse..eeaayavnae.avealAeaaaav 92 
                    k+l++Ga+G +G e+a++l +++++v al+r  + ++d+e   + +  ++ +   v  aAA  +v     +    +  + ++    ++  +aa++ 
     CTQ28584.1   6 KVLILGASGGIGGEVARRLVADNWQVRALKRG-ARMRDPEDGIQWIagDALDGGQVAAAAAGCDVIVHAVNppGYRHWRQQVLpMLRNTLQAAERQ 100
                    79***************************665.566777666666623344455788888877775444441123333333331346677999999 PP

                    T-EEEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHH...H-SSEEEEEE-SEESS.SSS-HHHH CS
  RmlD_sub_bind  93 galLihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavla...agkkalivRtswvyge.kgknfvkt 162
                     al++   t y +  ++    +e+++++P++  G+ ++a+E a ++    g +alivR +  +g   g+n+ ++
     CTQ28584.1 101 RALVVLPGTVYNYGPDAFPLIAEEAAQQPVTRKGAIRVAMELALKDyvqRGGRALIVRAGDFFGPrAGNNWFSQ 174
                    9************9999999************************995555669**********97467776554 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   4.3e-08   0.00013       1      73 [.       7      75 ..       7      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 4.3e-08
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE--- CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtg 73
                +l++Ga+G +G+ v+r l++++++vral R  +        e G + ++gd+ d   +++a  g dv+  +++
  CTQ28584.1  7 VLILGASGGIGGEVARRLVADNWQVRALKRGARMRD----PEDGIQWIAGDALDGGQVAAAAAGCDVIVHAVN 75
                79**************************99887666....467999999999999999999999999987776 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   3.2e-07   0.00097       3      34 ..       7      38 ..       5      86 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.2e-07
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrse 34
                vl+ Gas+GIG ++a++l++++++v +++r +
  CTQ28584.1  7 VLILGASGGIGGEVARRLVADNWQVRALKRGA 38
                9************************9998874 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0     9e-05      0.27       1      73 [.       8      73 ..       8      80 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9e-05
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihl 73
                +++G++G +G ++ ++Lv  +  ++vr+l    + ++++    ++    i gD +d  ++ +a  g dv++h 
  CTQ28584.1  8 LILGASGGIGGEVARRLVADN--WQVRALK--RGARMRDPEDGIQ---WIAGDALDGGQVAAAAAGCDVIVHA 73
                699***************988..9***975..5556655555444...67*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2368.14
//
Query:       CTQ28585.1  [L=303]
Description: putative transcriptional regulator (LysR family) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-30  105.2  10.4      4e-30  104.8  10.4    1.2  1  LysR_substrate  LysR substrate binding domain
    2.9e-16   59.2   0.6    7.5e-16   57.8   0.6    1.8  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8  10.4   4.4e-34     4e-30       2     208 ..      94     293 ..      93     294 .. 0.89

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 4.4e-34
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gep 95 
                     ++lrg +r++a++++++ +lppl+ar+r++ P++ +el  ++  ++ d l+++e+D+a+r+  p++++l+ar+L++ +l l a +++ L r g p
      CTQ28585.1  94 AELRGVVRVAASEVVGAEVLPPLVARLRQACPNIVIELMLSN--RFQD-LLHREADIAVRMVAPQQEQLIARRLGRIELGLHATAAY-LTRqGLP 184
                     789***************************************..9999.66666*********************************.***9999 PP

                     ECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEEC.EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEET CS
  LysR_substrate  96 vsledLadeplilleegsglrdlledalreaglkp.rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrk 189
                      +l+dLa + li ++  ++l +++++a    ++++   a++++s  a l+l++aG Gi++  + ++ d +    l+ +  +++ l  +++lv ++
      CTQ28585.1 185 ATLDDLASHALIGFDSATPLVRRALQAYP--RFQReAFAMRTDSDLAQLSLIRAGAGIGICQAPLA-DGIIP--LQRVLAADFSLYLDTWLVMHE 274
                     9************9977775555554433..34444778**************************9.66666..786777888999********* PP

                     TCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidflreal 208
                     + ++spa +++ dfl++ l
      CTQ28585.1 275 DLRHSPACKRVFDFLAQGL 293
                     ***************8865 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.6   8.3e-20   7.5e-16       2      59 ..       8      65 ..       7      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 8.3e-20
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                ++ r+f+av +egs+++A + L+++qp++ r+i+ LE++lg+ Lf+R++ gl  T+a+
  CTQ28585.1  8 EWYRTFLAVLQEGSLSGASRTLNITQPTAGRHIAGLENALGQALFTRSQTGLLATDAA 65
                6789********************************************99*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2249.69
//
Query:       CTQ28586.1  [L=332]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-32  113.0   0.1    2.1e-32  112.6   0.1    1.2  1  Peripla_BP_2  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   0.1   1.2e-36   2.1e-32       1     237 [.      43     307 ..      43     308 .. 0.93

  Alignments for each domain:
  == domain 1  score: 112.6 bits;  conditional E-value: 1.2e-36
                   EEE-SHHHHHHHHHTT-GGGEEEB-GGG--GGGGGGT..TS-BSBESSSB-HHHHHHH--SEEEE-GGG........GGGHHHHHHHS-EEE----T CS
  Peripla_BP_2   1 iaslspsvteillalGatdkvvgvdtttsdpldadkleeaivevgadgeidvEklaalkPDlvilskgl.....gltdedeellksgiptvivessn 92 
                   +++l++ ++eill+lG+ ++vv+ + ++  +l++ ++ +a++++ +   +++E+++a  PD v ++  l     + +++ e+l  +g++ ++ +  +
    CTQ28586.1  43 VVALGQNTVEILLLLGLQKQVVASAFWPTSVLPQLAEQNAKIKTLTVEIPSLESVLAQNPDFVPAQLPLllgpeSKVARREDLATVGVNSYVSPGMC 139
                   89********************************99999******************************7766666666666666666666666666 PP

                   TS.................HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT...-EEEEEEEETTE...EEEE-TTSTTTHHHHTS-- CS
  Peripla_BP_2  93 tg.................eslkeqiralgellgledeaeklvaeidsklaaaksaidse..kpkpvlvfggade.ggyvvagsnsyigdlldalgi 169
                   +                    l+ +i  +  +++ ed++++l+a+++++ a++++   +   + + v++f++a + ++ +v g ns  g +++ lg+
    CTQ28586.1 140 ATkkatgdmygsrqklwdmTWLYQEISDFSRIFNVEDRGQALIADFKKREADLRQEFGKSkkDLSFVFWFSSASPsADAYVGGKNSASGFIASVLGG 236
                   559*****************************************************9999778899999999888899******************* PP

                   EESTTT--STT-EEE-HHHHHHH--SEEEEEEH.....HHHT-S--HHHHT-SHHHHTSHHHHTT-EEEE-HH CS
  Peripla_BP_2 170 eniaaeskkseyeeisaEqilasdpdvifvsgr.....aeadnktgleflkenpllaelpAvkngrVyaldss 237
                    n++ +  + e+ ++s+E i a++pdvi+v++      a +++ ++ +flk++p++++l+Avk+g+++ +d +
    CTQ28586.1 237 HNAITS--ETEWPTVSWESIIAANPDVIVVASLdrnrwALDKAEEKIKFLKSDPAVSQLEAVKKGHIVVMDGQ 307
                   ***999..7***********************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2540.81
//
Query:       CTQ28587.1  [L=345]
Description: Iron compound ABC superfamily ATP binding cassette transporter, binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-89  297.6  40.4    1.1e-88  297.3  40.4    1.0  1  FecCD            FecCD transport family
    6.8e-05   22.5  26.3    6.8e-05   22.5  26.3    2.0  2  ABC-3            ABC 3 transport family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.3  40.4   1.2e-92   1.1e-88       2     312 .]      25     341 ..      22     341 .. 0.98

  Alignments for each domain:
  == domain 1  score: 297.3 bits;  conditional E-value: 1.2e-92
       FecCD   2 lllllllslllgavkispsevfeallgka.......dsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalll 93 
                 l+l++++ +++g+  i++++vf a+++++       +++ +++++++rl r+l+a+ +Ga+La++G++lQ++++N La+P++lG+s+ga+ gav +++l
  CTQ28587.1  25 LALVIAVGVSVGELAIPLQNVFYAISNRTgltaeplNRIYESVIWDFRLSRALVAACCGAGLAICGVVLQSLLKNALAEPYVLGVSAGASTGAVSIVVL 123
                 677888999****************99999***999999************************************************************ PP

       FecCD  94 llgslslfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllll.neealesilfwllGslsgaswskvllllvlllllll 191
                 + +++++++l++ af+ga++a+++v ll+ ++++  +++ iLaG+a s l++a+t++ + ++ +++++++++fwllGs+sg++w ++ l++v++l++l+
  CTQ28587.1 124 G-LGAGAISLSAGAFAGAFAAFAFVALLT-NGARGGNERTILAGVAASQLFNAITAYTISTSaSAQQARDVMFWLLGSFSGVRWPEFQLVIVVVLAGLA 220
                 9.9**************************.***************************99988899********************************** PP

       FecCD 192 lllllarkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllspt 290
                 ++l++ar ld++++gd+ A+slG+ v rvrl+l+ ++al+ta++v+++G igFvGL+vPh++r+++g+ hr+ll++sal+Ga+l++lad+++rll++p+
  CTQ28587.1 221 VCLWYARALDAFTFGDDAAASLGIAVPRVRLILFTTAALITATIVSMAGSIGFVGLVVPHVMRFFFGPLHRTLLIASALAGAILMVLADIASRLLIAPQ 319
                 *************************************************************************************************** PP

       FecCD 291 elpvgivtaliGapffiylllr 312
                  lpvg+vtal+G+pff+++++r
  CTQ28587.1 320 SLPVGVVTALVGVPFFAVIIYR 341
                 *******************986 PP

>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.6      0.19   1.7e+03      54      71 ..      16      33 ..      11      42 .. 0.62
   2 !   22.5  26.3   7.6e-09   6.8e-05      35     243 ..     110     323 ..      73     341 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.19
       ABC-3 54 vnlllgailvgliaaval 71
                   +l+ai+++l++av++
  CTQ28587.1 16 GWCVLAAIVLALVIAVGV 33
                555556666666666554 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 7.6e-09
       ABC-3  35 gdalsHaalpGvalayllgvnlllgailvgliaaval.ellkrktklked..taigivlsvfl.alglvlvslikk..skvdldsyLfGniltisqedl 127
                 +++ s  a++ v+l++  g   l + +++g +aa+a+ +ll++ ++  ++  ++ g+ +s  + a+   ++s + +   + d++ +L+G+  ++   ++
  CTQ28587.1 110 SAGASTGAVSIVVLGLGAGAISLSAGAFAGAFAAFAFvALLTNGARGGNErtILAGVAASQLFnAITAYTISTSASaqQARDVMFWLLGSFSGVRWPEF 208
                 455666677778888888766555555556666665505566666654442145688887766578888888777677889****************** PP

       ABC-3 128 iliaiieavvllllllfwkelllitfdeelAkveglsvkllkllllalialavvvalqavGviLvialliiPaatArrltrslesllivAillglvsvv 226
                  l++++++  l+++l+  + l ++tf  + A++ g+ v +++l+l++  al  ++++ ++G i  + l ++P ++   ++   ++lli ++l g++ +v
  CTQ28587.1 209 QLVIVVVLAGLAVCLWYARALDAFTFGDDAAASLGIAVPRVRLILFTTAALITATIVSMAGSIGFVGL-VVPHVMRFFFGPLHRTLLIASALAGAILMV 306
                 **************************************************************998885.78***************************9 PP

       ABC-3 227 aGlllSyyldlatGavi 243
                 +  + S  l ++ +  +
  CTQ28587.1 307 LADIASRLLIAPQSLPV 323
                 99999987766554333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2482.55
//
Query:       CTQ28588.1  [L=253]
Description: ABC transporter (Iron.B12.siderophore.hemin), ATP-binding component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-34  118.6   0.0    3.6e-34  118.2   0.0    1.2  1  ABC_tran      ABC transporter
    8.9e-09   35.6   0.1    8.9e-05   22.4   0.0    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    4.7e-05   22.9   0.1    0.00036   20.1   0.1    2.0  1  SMC_N         RecF/RecN/SMC N terminal domain
    0.00031   21.2   0.3    0.00056   20.3   0.3    1.4  1  AAA_16        AAA ATPase domain
     0.0075   16.0   0.0       0.25   11.0   0.0    2.0  2  AAA_15        AAA ATPase domain
  ------ inclusion threshold ------
       0.02   14.4   0.0      0.036   13.5   0.0    1.4  1  CutC          CutC family
      0.036   14.0   0.0      0.091   12.7   0.0    1.7  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
      0.042   14.3   0.0      0.087   13.3   0.0    2.0  1  AAA           ATPase family associated with various cellular 
      0.044   13.7   0.0      0.069   13.1   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
       0.06   13.1   0.0       0.16   11.7   0.0    1.7  2  AAA_29        P-loop containing region of AAA domain
       0.09   12.8   0.2       0.55   10.2   0.1    2.1  2  AAA_5         AAA domain (dynein-related subfamily)
       0.14   12.7   0.0       0.24   11.9   0.0    1.3  1  AAA_23        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.0   2.4e-37   3.6e-34       1     137 []      18     167 ..      18     167 .. 0.96

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 2.4e-37
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esd 82 
                 ++nvsl + +ge+v+++G+nG+GKS+Ll++lagl +p++G+++ldg+d+ +  +++l +++++++q+     +++vr+                  ++d
  CTQ28588.1  18 VNNVSLRVPRGETVGLLGPNGCGKSSLLRVLAGLRRPDAGRVTLDGQDIARMAKKQLARRVAFVEQHGMTEANMRVRDVvrlgriphhspfsnwsaQDD 116
                 58*****************************************************************99999999***9**************987777 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 e i++al+++ + e+ ++ +     sLSgG++qrv +aral++ p+ +llDEpt+
  CTQ28588.1 117 EAIAAALQRVAMLEKSEQGW----LSLSGGERQRVHIARALAQSPSEILLDEPTN 167
                 77999999999999888888....******************************8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     6e-08   8.9e-05       3      25 ..      32      54 ..      31      82 .. 0.78
   2 !   11.2   0.1   0.00015      0.23     252     285 ..     154     184 ..     136     215 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6e-08
      AAA_21  3 vliGpNgsGKSnLLdaldllarl 25
                +l GpNg+GKS+LL+ l +l+r 
  CTQ28588.1 32 GLLGPNGCGKSSLLRVLAGLRRP 54
                699*****************974 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00015
      AAA_21 252 lralkkgsllliDEpEngLHPkllrrllellkel 285
                 ++ +   s +l+DEp n+L+ + +  l++l++el
  CTQ28588.1 154 AQSP---SEILLDEPTNHLDIHHQMQLMQLISEL 184
                 3333...559********************9664 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   2.4e-07   0.00036      27     187 ..      31     185 ..       7     212 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.4e-07
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCH.CCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrse.klsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevs 124
                   ++GpNG+GKs+ll  +    G r   + r + + +d+    k++ +   a ve +   e +     ++ v + r   ++  s++  ++ e+  + ++
  CTQ28588.1  31 VGLLGPNGCGKSSLLRVL---AGLRRPDAGRVTlDGQDIARMAKKQLARRVAFVEQHGMTEANM--RVRDVVRLGRIPHHSPFSNWSAQDDEAIAAALQ 124
                 4589**********9988...6766666666552445555555666667777777764444443..556668888888888888888888777777666 PP

                 H..HHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHC CS
                 x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 125 e..llesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeks 187
                 +  +le+++    +LSgGe++ v +a  +A     p+   llDe   +LD ++  ++ +l+ e  
  CTQ28588.1 125 RvaMLEKSEQGWLSLSGGERQRVHIARALAQS---PS-EILLDEPTNHLDIHHQMQLMQLISELP 185
                 4226788888888*********9999887744...33.369********************9976 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.3   3.8e-07   0.00056      20     107 ..      26     133 ..      17     186 .. 0.56

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.8e-07
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde................aesaeleawrekle 102
                    r+e v l G+ G+GKssl+r l+  l++ ++  ++ + ++     ++ +  ++lar+  + + + +                +  + ++ w+++ +
  CTQ28588.1  26 P--RGETVGLLGPNGCGKSSLLRVLA-GLRRPDAGRVTLDGQDI----AR-MAKKQLARRVAFVEQHGMteanmrvrdvvrlgriPHHSPFSNWSAQDD 116
                 4..447899***************99.67777533333333333....11.344555455555555555333333333344444444445555555555 PP

      AAA_16 103 eala............a 107
                 ea+a            +
  CTQ28588.1 117 EAIAaalqrvamleksE 133
                 55554444333333331 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00017      0.25      28      48 ..      33      53 ..      22      78 .. 0.75
   2 ?    2.7   0.3     0.057        86     327     351 ..     160     184 ..     142     188 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
      AAA_15 28 liGkNnsGKSsilealdlFln 48
                l G+N++GKSs+l++l  +  
  CTQ28588.1 33 LLGPNGCGKSSLLRVLAGLRR 53
                78************9965555 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.057
      AAA_15 327 lliEEPEahLHpqaqkvlikllkel 351
                 +l++EP +hL + +q++l++l+ el
  CTQ28588.1 160 ILLDEPTNHLDIHHQMQLMQLISEL 184
                 899*****************99987 PP

>> CutC  CutC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.4e-05     0.036      95     155 ..     164     224 ..     145     243 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
        CutC  95 tadgeiDlkaleklieaaegLgvtfHrAfDvvadpeealeqlielgvervLtsGqkssale 155
                 ++ +++D++   +l++    L+vt   A+   +  +   ++li +   ++L sG+++++l 
  CTQ28588.1 164 EPTNHLDIHHQMQLMQLISELPVTSIVAIHDLNHAAMFCDSLIVMQQGQILASGTPEEILS 224
                 67899**************************************************998875 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.1e-05     0.091       1      12 [.     212     223 ..     212     225 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.1e-05
  BCA_ABC_TP_C   1 rvIAeGtPaEvr 12 
                   +++A+GtP+E+ 
    CTQ28588.1 212 QILASGTPEEIL 223
                   69*********7 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.8e-05     0.087       3      37 ..      33      69 ..      31     240 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.8e-05
                EESSTTSSHHHHHHHHHHHH..THEEEEEETTTCSSS CS
         AAA  3 lyGppGtGKTllakavakel..gvefleisgsellsk 37
                l Gp G+GK++l + +a     ++  ++++g ++  +
  CTQ28588.1 33 LLGPNGCGKSSLLRVLAGLRrpDAGRVTLDGQDIARM 69
                89**************998422233455555555533 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.6e-05     0.069      98     122 ..      27      51 ..       5      85 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.6e-05
                  TTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpe 122
                  +++t+ l+G+ G GKS+L+ +l++ 
   CTQ28588.1  27 RGETVGLLGPNGCGKSSLLRVLAGL 51 
                  468999***************9985 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.16      16      39 ..      22      45 ..      16      56 .. 0.80
   2 ?   -3.4   0.0       5.6   8.4e+03       8      21 ..     110     123 ..     108     129 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
      AAA_29 16 tieidlkgatlltGpsGsGKSTll 39
                ++++ + +++ l Gp+G GKS+ll
  CTQ28588.1 22 SLRVPRGETVGLLGPNGCGKSSLL 45
                566654458889**********98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.6
      AAA_29   8 NWgtfdghtieidl 21 
                 NW   d++ i   l
  CTQ28588.1 110 NWSAQDDEAIAAAL 123
                 88888887766555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00037      0.55       4      22 ..      33      51 ..      30      84 .. 0.86
   2 ?   -0.3   0.0      0.67     1e+03      19      49 ..     149     179 ..     140     214 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00037
                EE--SSSSHHHHHHHGGGG CS
       AAA_5  4 LvGppGtgKselaerlaaa 22
                L+Gp G+gKs+l + la +
  CTQ28588.1 33 LLGPNGCGKSSLLRVLAGL 51
                9*************99876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.67
                 GGGGBS--EEEEE--TT--HHHHH--B--.. CS
       AAA_5  19 laaalnreveyvqltrdtteedlkgrreikn 49 
                 +a+al ++  +++l + t+  d+  ++++++
  CTQ28588.1 149 IARALAQSPSEILLDEPTNHLDIHHQMQLMQ 179
                 5555555555555555555555555555432 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00016      0.24      24      39 ..      33      48 ..      26      50 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00016
      AAA_23 24 ItGpNGaGKTTildAi 39
                + GpNG+GK+++l+ +
  CTQ28588.1 33 LLGPNGCGKSSLLRVL 48
                78**********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 1940.79
//
Query:       CTQ28589.1  [L=410]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-26   92.7  43.6      3e-26   92.2  43.6    1.3  1  MFS_1       Major Facilitator Superfamily
    1.8e-06   27.1  13.2    7.1e-06   25.1   7.3    2.1  2  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
        0.2   12.0   3.3       0.54   10.6   0.2    3.2  2  DUF2516     Protein of unknown function (DUF2516)
        7.4    5.3  15.7        1.1    8.0   8.9    2.4  2  Sugar_tr    Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2  43.6   6.8e-30     3e-26       3     349 ..      19     361 ..      17     402 .. 0.89

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 6.8e-30
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgag 100
                  ++f+  ++++++ p+l l+l +d  +s+  igl+l+l ++ +  + +++G l+dr+G++ ++l+g ++ ++g+lll+ + +slw+++++ +l+G+g++
  CTQ28589.1  19 GSQFVFNIGFYAVVPFLALFLRDDMLLSGGLIGLILGLRTFSQQGMFILGGTLADRYGAKAIILAGCVVRVAGFLLLA-CgASLWPIILGACLTGVGGA 116
                 67899999*****************************************************************55555.46****************** PP

       MFS_1 101 alfpagaaliadwfpke......ergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgp 193
                 ++ p++ al+a+  +++       r+  ++l++++  lGa++gp++gg+l+  +g+r + ++ a+++lla+    +l+++ p + ++ +++++      
  CTQ28589.1 117 LFSPSIEALLARAGTHSqangkrSRAEWFALFAVCGELGAVIGPVAGGVLS-GIGFRHIALAGAGIFLLALA---VLFFCLPADGHTTTTRRR------ 205
                 ***********998887777777899999**********************.999***************66...667777777777777777...... PP

       MFS_1 194 aplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalgla 292
                    vp w+ l+ ++++ ++++a  ++ + +++l+  lp+   ++ g      ++ l++l++l+++ l+l ++r+++r+g+ r+l +++lll+++++++a
  CTQ28589.1 206 ---VPWWTPLRQPRFV-AFILAYSSWLLSYNQLYLALPVE-IQRSGGR-EQDLAPLFMLASLLIITLQLPLARFARRMGAVRILPVGFLLLSASFASVA 298
                 ...6756667767755.599999999999**********6.6666666.699*********************************************** PP

       MFS_1 293 llavtssavllll.......vlvliGfglgfvfpsllalasdlappeeagtasglfntagslgg 349
                 l+a++  ++ ++l       ++ l+++g+ + +p++  l+  +a ++  g+ +g+  tag+ + 
  CTQ28589.1 299 LFAAA-PPAEGWLrlmpaagFVTLLTLGQMLLVPAAKDLIPLFAEESTLGAHYGALATAGGCAV 361
                 *****.444444455677744445888***************************9999988665 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   7.3   1.6e-09   7.1e-06     242     373 ..      29     166 ..      16     176 .. 0.80
   2 !    5.8   1.1    0.0012       5.4     182     316 ..     174     311 ..     154     329 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.6e-09
  MFS_1_like 242 giienFlflYL.kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgll......waa 333
                  ++  Fl l+L +++  s+ l+G ++ l+++++  +f+++  l +++G+  +++++ ++ ++ fll+a+  ++w +++   L g+  +l+       +a
  CTQ28589.1  29 YAVVPFLALFLrDDMLLSGGLIGLILGLRTFSQQGMFILGGTLADRYGAKAIILAGCVVRVAGFLLLACGASLWPIILGACLTGVGGALFspsieaLLA 127
                 456679************************************************************************999999976665111111233 PP

  MFS_1_like 334 aveyvskiapksleatgqgllsglyfglGralGsliGGll 373
                  +   s++ +k+ +a   +l++     lG  +G ++GG+l
  CTQ28589.1 128 RAGTHSQANGKRSRAEWFALFAVC-GELGAVIGPVAGGVL 166
                 333445677788888888888765.448888888888886 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0012
  MFS_1_like 182 llyvlaallvisllvvlilnetekesklkvtkslqvllnilknpeviifllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffa 280
                 +++  a++++++l+v+  +     ++ +  +  +   +  l++p+ ++f+l+      s++ ++  l + ++  g  +  l  l +l  ++ i+l +  
  CTQ28589.1 174 IALAGAGIFLLALAVLFFCLPADGHTTTTRR--RVPWWTPLRQPRFVAFILAYSSWLLSYNQLYLALPVEIQRSGGREQDLAPLFMLASLLIITLQLPL 270
                 4444455555555553333333333333333..3678999***********9999999999998888888899999999999999999*********** PP

  MFS_1_like 281 eklleklGhvklliiallayilrfllyaii.....enawlv 316
                  +  +++G+v++l +++l+  + f  +a++      + wl+
  CTQ28589.1 271 ARFARRMGAVRILPVGFLLLSASFASVALFaaappAEGWLR 311
                 *************************9999976565555665 PP

>> DUF2516  Protein of unknown function (DUF2516)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   0.00012      0.54      24      80 ..     122     184 ..      99     189 .. 0.79
   2 ?   -0.3   0.3      0.31   1.4e+03      43      66 ..     307     329 ..     283     337 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00012
     DUF2516  24 vdalrrradaF.eaagkrtKpfWlailgvallvlll......glfgalsl.lgliavvaalvYlv 80 
                 ++al++ra    +a gkr++  W+a+ +v+  ++ +      g+    ++ +  ia++ a+++l+
  CTQ28589.1 122 IEALLARAGTHsQANGKRSRAEWFALFAVCGELGAVigpvagGVL--SGIgFRHIALAGAGIFLL 184
                 6788888877725779**************999999888864433..345577888999999985 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.31
     DUF2516  43 pfWlailgvallvlllglfgalsl 66 
                 + Wl ++ +a +v+ll + g++ l
  CTQ28589.1 307 EGWLRLMPAAGFVTLL-TLGQMLL 329
                 5799999999999999.4455544 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   8.9   0.00024       1.1      49     118 ..      51     117 ..      13     127 .. 0.73
   2 ?    0.6   0.6     0.043   1.9e+02      36      96 ..     136     193 ..     118     203 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00024
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGl 118
                 gli+++  + +    +++g+l+dr+G k ++l+++v+ v+g +l a+     s++ +i+g  l+G+g  l
  CTQ28589.1  51 GLILGLRTFSQQGMFILGGTLADRYGAKAIILAGCVVRVAGFLLLACGA---SLWPIILGACLTGVGGAL 117
                 5555555555555557899***********************9999999...9************98655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.043
                 -SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-T CS
    Sugar_tr  36 ksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaa 96 
                 + k s +e   +  l++ +  +Ga+iG + +g l+ +  R  +l+ a++++++ avl ++ 
  CTQ28589.1 136 NGKRSRAE---WFALFAVCGELGAVIGPVAGGVLSGIGFRHIALAGAGIFLLALAVLFFCL 193
                 33333444...88899999999999*99999988877667777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.35
# Mc/sec: 3465.25
//
Query:       CTQ28590.1  [L=343]
Description: 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.8e-40  136.8   0.0    1.9e-39  135.9   0.0    1.4  1  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
    0.00037   20.5   0.0    0.00065   19.7   0.0    1.3  1  CNP1         CNP1-like family
      0.002   17.7   0.0     0.0088   15.6   0.0    2.0  2  Meth_synt_1  Cobalamin-independent synthase, N-terminal domai


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.0   3.1e-43   1.9e-39       1     319 [.       5     330 ..       5     334 .. 0.87

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 3.1e-43
                  S-BB--SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHHTTSTTEE--SS--EEEETTEEE---EE- CS
  Meth_synt_2   1 lpTttiGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfgealdgfaftkngwvqsygsrcvrppiiv 98 
                  lpT+t GS P+ + + +  + +   +ls ee  +  r++ +  +++q ++g+D++++ge  R+  v  f e+l+g+ f k ++v+ ++      p +v
   CTQ28590.1   5 LPTSTAGSLPKPSWLAQPETLWSPWKLSSEELLAGKRDALRLSLDDQLRAGIDIVSDGEQTRQHFVTTFIEHLSGVDFAKREIVKIRNRYEASVPTVV 102
                  79***********************************************************************************999999999**** PP

                  SS---SS-SSTHHHHHHTTS-SS-BEEEEE-HHHHHHTSEE-TTS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-TTSSTT--SSGGGH.HHHHHH CS
  Meth_synt_2  99 gdvsrpaamtvkesalaqsltdkpvkglltGpvtilnwsfvrddvdraeaaaqialalrdevkdLeaaGikviQiDepalreGlplkkadw.aayldw 195
                  g v+r++++ v+ + +   lt++p+k  l Gp+t+++  +     +r++ a + a  l +e+k+LeaaG+ +iQ+Depa+     ++++dw  a l+ 
   CTQ28590.1 103 GAVERQKPVFVEDARYLRQLTSQPIKWALPGPMTMIDTLYDNHYKSREKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNVF-FDEVNDWgIAALER 199
                  ****************************************9999***********************************9764.55555662467777 PP

                  HHHHHHHHHTT.......S-TTSEEEEEES-S..--CCCHHHHHTT--SEEEESBSSS-SSGGGGTTTT---SEEEEBSS-TTSSS--THHHHHHHHH CS
  Meth_synt_2 196 aveafrldtia.......aaddtqvhtHlCys..elndilsaiaaldvDvitieasrsdeellealeevkygrgvglGvydihsprvpsmeeiaalik 284
                  a+e+ + +t++       ++++t+ +  l ++  ++++  +++++ + D+i++e  +s    ++ l e   g++v +G +d+ s ++++ ee+a +++
   CTQ28590.1 200 ATEGLKCETAVhicygygIKANTDWKKTLGSEwrQYEEAFPQLQKSSLDIISLECHNSR-VPMDLL-ELIRGKKVMVGAIDVASHAIETPEEVAGTLR 295
                  7777766654222222225666666655554322667777*************976665.333333.3345699************************ PP

                  CHHCTS-STSB-BB-SS-STTS-HHHHHHHHHHHH CS
  Meth_synt_2 285 kaldvapkerlwvnPdCGLktrkreearaalknmv 319
                  kal+ + +++l+ + +CG++ ++r+ a+ +l+   
   CTQ28590.1 296 KALAFVDADKLYPSTNCGMAPLPRHVATGKLHALS 330
                  *************************9999998765 PP

>> CNP1  CNP1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.1e-07   0.00065      67     127 ..     201     262 ..     195     269 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.1e-07
        CNP1  67 yeGirCataerklYatgrkdnkrWikaraaeWqrieeseanrlraaLar.dyfCeekavard 127
                  eG++C+ta    Y++g k n+ W+k+  +eW++ ee  ++ +++ L   +  C+++ v+ d
  CTQ28590.1 201 TEGLKCETAVHICYGYGIKANTDWKKTLGSEWRQYEEAFPQLQKSSLDIiSLECHNSRVPMD 262
                 79*********************************998888888777431445777666655 PP

>> Meth_synt_1  Cobalamin-independent synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.11   6.5e+02      27      60 ..      30      63 ..      18      77 .. 0.78
   2 !   15.6   0.0   1.5e-06    0.0088     148     208 ..     125     184 ..      94     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.11
                 SS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES- CS
  Meth_synt_1 27 kiseeeLektakeLrakhwkkqkeagidlipvnd 60
                 k+s+eeL++  ++  +  ++ q +agid+++ ++
   CTQ28590.1 30 KLSSEELLAGKRDALRLSLDDQLRAGIDIVSDGE 63
                 7788888888887777778888889****98776 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.5e-06
                  GGEEEEEE-HHHHHHT-EETTCC.-HCHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGS CS
  Meth_synt_1 148 ieakpvllGpltflkLskakeekveklellekLlpvYkelleeLkeagvewvqidEPalvl 208
                     k  l Gp+t +     ++ k ++++l  ++ ++ ++  +eL++agv+++q+dEPa+ +
   CTQ28590.1 125 QPIKWALPGPMTMIDTLYDNHYK-SREKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNV 184
                  45677899999999755555555.68889999999999999*****************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2558.28
//
Query:       CTQ28591.1  [L=326]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.3e-179  594.4   4.5   4.9e-179  594.3   4.5    1.0  1  DUF1852   Domain of unknown function (DUF1852)


Domain annotation for each model (and alignments):
>> DUF1852  Domain of unknown function (DUF1852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  594.3   4.5  2.7e-183  4.9e-179       1     323 []       1     321 [.       1     321 [. 0.99

  Alignments for each domain:
  == domain 1  score: 594.3 bits;  conditional E-value: 2.7e-183
     DUF1852   1 mkkdltfsiksirfdedykPsestrittnfanlarGekrqenlrnalkmidnrfnalaewdnpkgdrysveleiisveidieaeekeeafplieilktk 99 
                 m++++t++ik++rfde+y+P+e+trittnfanlarG +r+enlrn+l m++nrfn+la+wdnp++dry+vel+iisve++i  ++++ +fp+ieil+t+
  CTQ28591.1   1 MNNKFTYTIKRTRFDENYNPAENTRITTNFANLARGVNREENLRNTLIMMNNRFNSLAHWDNPHNDRYAVELDIISVEMNI--AQDSASFPVIEILQTH 97 
                 899******************************************************************************..788999********** PP

     DUF1852 100 ivdkktgkriegivGnnfssyvrdydfsvlllehnkdkaefsvPedfGdlhGklfkslvnseaykekfkkaPviclsvsssktykrtenehPvlGveyk 198
                 ivdkk+g+r++givGnnfssyvrdydfsvlllehnkd+++fsvPe+fG+lhG++fk +v+s+a++++f+kaPviclsvss+ +y+rt+nehPvlG+ey 
  CTQ28591.1  98 IVDKKSGERHAGIVGNNFSSYVRDYDFSVLLLEHNKDQSRFSVPENFGELHGNIFKDFVQSSAWRANFSKAPVICLSVSSKDVYHRTGNEHPVLGIEYA 196
                 *************************************************************************************************** PP

     DUF1852 199 qdelsltdeyfakmGlkvryfmPknsvaPlafyfsgdllsdytnlelististmetfqkiyrPeiynansaagkvykpslkhqdysltkivydreersq 297
                 q+ +slt++yf+kmGl+vryfmPknsvaPlafyf+gdllsdyt+leli+tistmetfqkiyrPeiynans+ag++y+p+l+h d+sltkivydreers 
  CTQ28591.1 197 QEGVSLTERYFSKMGLQVRYFMPKNSVAPLAFYFTGDLLSDYTSLELIATISTMETFQKIYRPEIYNANSPAGQYYQPNLSHLDHSLTKIVYDREERSL 295
                 *************************************************************************************************** PP

     DUF1852 298 laveqgkfaeehfikpykeileqwsa 323
                 la+eqgkf+++hfi+p+k++leqwsa
  CTQ28591.1 296 LAIEQGKFTQQHFINPHKTLLEQWSA 321
                 ************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2534.78
//
Query:       CTQ28592.1  [L=106]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.16   12.6   3.9       0.36   11.4   3.9    1.6  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s
       0.23   11.7   2.8       0.27   11.5   2.8    1.4  1  DUF4148   Domain of unknown function (DUF4148)


Domain annotation for each model (and alignments):
>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.9     4e-05      0.36       1      16 [.       1      16 [.       1      16 [. 0.97

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4e-05
      LPAM_1  1 MKKillalgalllLsG 16
                MKK llal+a++++++
  CTQ28592.1  1 MKKALLALFAIATVTA 16
                **************97 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.8     3e-05      0.27       1      22 [.       1      27 [.       1      91 [. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3e-05
     DUF4148  1 Mkstliaaalaaavaaaaala.....a 22
                Mk+ l+a+ ++a+v+aa+a+a     +
  CTQ28592.1  1 MKKALLALFAIATVTAASAFAadktdV 27
                999999999***********9765440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 799.89
//
Query:       CTQ28593.1  [L=82]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-16   59.1  12.3    3.8e-16   59.1  12.3    2.2  2  Transgly_assoc   Transglycosylase associated protein
    9.7e-05   22.5  17.4    0.00011   22.4  17.4    1.0  1  DUF5518          Family of unknown function (DUF5518)
  ------ inclusion threshold ------
       0.46   10.3   6.1       0.24   11.1   3.8    1.7  2  Gly-zipper_YMGG  YMGG-like Gly-zipper
       0.64   10.2   5.5       0.24   11.6   2.9    1.6  2  DUF2306          Predicted membrane protein (DUF2306)
        1.3    8.5   5.9        1.6    8.3   5.9    1.0  1  DUF2632          Protein of unknown function (DUF2632)
          4    7.4  15.3        1.1    9.3   7.6    2.2  2  Trep_Strep       Hypothetical bacterial integral membrane pro
        5.6    6.7  14.8          1    9.1   0.3    3.0  3  FeoB_C           Ferrous iron transport protein B C terminus
        7.2    6.9  14.7          1    9.6   1.0    3.0  3  DUF2537          Protein of unknown function (DUF2537)
        8.9    7.1  13.4        2.4    8.9   8.5    1.9  2  DUF4282          Domain of unknown function (DUF4282)


Domain annotation for each model (and alignments):
>> Transgly_assoc  Transglycosylase associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   3.4      0.28   5.6e+02       1      34 [.       7      33 ..       7      34 .. 0.59
   2 !   59.1  12.3   1.9e-19   3.8e-16       1      48 [.      33      81 ..      33      82 .] 0.97

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.28
  Transgly_assoc  1 IilGivGAfvGgfllgllgigvgggelaslivai 34
                    Ii G++  +++ ++++         + +++iv +
      CTQ28593.1  7 IIFGLIAGILAKWIMPGK-------DGGGFIVTV 33
                    677777777888876533.......445555554 PP

  == domain 2  score: 59.1 bits;  conditional E-value: 1.9e-19
  Transgly_assoc  1 IilGivGAfvGgfllgllgi.gvgggelaslivaiiGAiILLfivrlvr 48
                    +ilGi+GA+vGg++  l+g+ +v+g++++s++va+iGA ++Lfi+r vr
      CTQ28593.1 33 VILGIIGAVVGGWISTLFGFgKVDGFNFGSFVVAVIGALVVLFIYRKVR 81
                    69*********************************************98 PP

>> DUF5518  Family of unknown function (DUF5518)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4  17.4   5.3e-08   0.00011      25     102 ..       4      75 ..       1      80 [. 0.75

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 5.3e-08
     DUF5518  25 vgsllgllvgGlvaGylaggdskdgavaGalaGligaipvlvlllvlllglvaaigglagfvallvalllvvllllvv 102
                  ++++++l++G++a ++  g+ + g+++ ++ G+iga++++++++++++      g + gf +++++++++ +l++++
  CTQ28593.1   4 LSWIIFGLIAGILAKWIMPGKDGGGFIVTVILGIIGAVVGGWISTLFGF------GKVDGFNFGSFVVAVIGALVVLF 75 
                 679999******************************************5......34444444333333333333333 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   3.8     0.022        43      28      41 ..      28      44 ..       8      48 .. 0.54
   2 ?   11.1   3.8   0.00012      0.24       7      39 ..      36      72 ..      23      72 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.022
                     X...XXXXXXXXXXXXX CS
  Gly-zipper_YMGG 28 G...AaiGAaaGalaGg 41
                     G   ++i + +Ga++Gg
       CTQ28593.1 28 GfivTVILGIIGAVVGG 44
                     36664555556666665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00012
                     XXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXX CS
  Gly-zipper_YMGG  7 AaiGAaaGAvvGaliGsgggkG....AaiGAaaGala 39
                     + iGA++G  +  l+G g   G      + A++Gal+
       CTQ28593.1 36 GIIGAVVGGWISTLFGFGKVDGfnfgSFVVAVIGALV 72
                     6788888888888888444444555577777777765 PP

>> DUF2306  Predicted membrane protein (DUF2306)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       0.8   1.6e+03      39      56 ..       7      24 ..       2      33 .. 0.63
   2 ?   11.6   2.9   0.00012      0.24      37      78 ..      31      72 ..      27      82 .] 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.8
     DUF2306 39 vlavllaalsglflsvya 56
                ++ +l+a++ + ++   +
  CTQ28593.1  7 IIFGLIAGILAKWIMPGK 24
                445667777777766555 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00012
     DUF2306 37 vyvlavllaalsglflsvyatgglvlllgflllallwlvftv 78
                v+v+++++ a+ g ++s+++ +g+v  + f+ + +++++ +v
  CTQ28593.1 31 VTVILGIIGAVVGGWISTLFGFGKVDGFNFGSFVVAVIGALV 72
                67999******************9999999999888887665 PP

>> DUF2632  Protein of unknown function (DUF2632)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.9   0.00078       1.6      71     140 ..       6      74 ..       3      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00078
     DUF2632  71 wlflslaslaiaywwlpsmtftgywaltiiatilglimlimmsvkfvsfvkl.fyrtgsfaiairgpivlv 140
                 w+++ l +  +a w +p     g + +t+i  i+g ++   +s  f  f k+  +  gsf +a+ g +v++
  CTQ28593.1   6 WIIFGLIAGILAKWIMPGKDGGG-FIVTVILGIIGAVVGGWISTLF-GFGKVdGFNFGSFVVAVIGALVVL 74 
                 9999999999*******988666.5789999999*99999999877.5666525899*********99876 PP

>> Trep_Strep  Hypothetical bacterial integral membrane protein (Trep_Strep)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.7     0.035        70      78      95 ..       4      21 ..       1      28 [. 0.72
   2 ?    9.3   7.6   0.00053       1.1       4      55 ..      29      81 ..      24      82 .] 0.93

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.035
  Trep_Strep 78 wlvlllaiiggliaelia 95
                + ++++ +i+g++a  i+
  CTQ28593.1  4 LSWIIFGLIAGILAKWIM 21
                567788888888888777 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00053
  Trep_Strep  4 litigiftalyfvvvfvvgm.lglispvlmlllpaivallagivymllvakvp 55
                +i ++i++++  vv   ++  +g+ ++ ++ + +++va++++ v++++++kv+
  CTQ28593.1 29 FIVTVILGIIGAVVGGWISTlFGFGKVDGFNFGSFVVAVIGALVVLFIYRKVR 81
                7999***********9999988888999***********************97 PP

>> FeoB_C  Ferrous iron transport protein B C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.3    0.0005         1       9      32 ..       7      30 ..       2      32 .. 0.81
   2 ?    4.6   2.0     0.013        27       5      21 ..      33      49 ..      29      60 .. 0.77
   3 ?    1.6   1.6      0.11   2.2e+02       5      20 ..      63      78 ..      57      82 .] 0.55

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0005
      FeoB_C  9 ilvallvalllkkttlkgep.spfv 32
                i++ l++++l+k++ ++g++  +f+
  CTQ28593.1  7 IIFGLIAGILAKWI-MPGKDgGGFI 30
                88899999999998.9999877777 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.013
      FeoB_C  5 Yllgilvallvalllkk 21
                 +lgi+ a++ +++   
  CTQ28593.1 33 VILGIIGAVVGGWISTL 49
                789**********9865 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.11
      FeoB_C  5 Yllgilvallvalllk 20
                +++ ++ al+v ++ +
  CTQ28593.1 63 FVVAVIGALVVLFIYR 78
                4445555555555555 PP

>> DUF2537  Protein of unknown function (DUF2537)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.0   0.00052         1      59      77 ..       3      21 ..       1      22 [. 0.91
   2 ?    3.6   2.5     0.038        75      63      79 ..      33      49 ..      29      50 .. 0.90
   3 ?    1.5   0.1      0.17   3.5e+02      12      23 ..      64      75 ..      55      81 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00052
     DUF2537 59 vlRWvvlGvaaGvlvgwia 77
                +l W+++G++aG+l+ wi+
  CTQ28593.1  3 ILSWIIFGLIAGILAKWIM 21
                788**************96 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.038
     DUF2537 63 vvlGvaaGvlvgwiall 79
                v+lG++ +v+ gwi++l
  CTQ28593.1 33 VILGIIGAVVGGWISTL 49
                689***********987 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.17
     DUF2537 12 fvavvvavavva 23
                +vav+ a++v+ 
  CTQ28593.1 64 VVAVIGALVVLF 75
                233333333333 PP

>> DUF4282  Domain of unknown function (DUF4282)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   3.3     0.011        22      23      61 ..       6      42 ..       1      43 [. 0.85
   2 ?    8.9   8.5    0.0012       2.4      18      61 ..      34      76 ..      28      80 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.011
     DUF4282 23 lialvllslivgafaalseslsagggllllllaviafll 61
                 i+++l+++i++ +++   + + gg+++ ++l++i++++
  CTQ28593.1  6 WIIFGLIAGILAKWIMP--GKDGGGFIVTVILGIIGAVV 42
                57888889999999999..9999************9986 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0012
     DUF4282 18 ilgivlialvllslivgafaalseslsagggllllllaviafll 61
                ilgi+ ++++ +++++ +f ++ +++++g+++++++ a+++ ++
  CTQ28593.1 34 ILGIIGAVVGGWISTLFGFGKV-DGFNFGSFVVAVIGALVVLFI 76
                7899999999999999999999.888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1021  (0.0569468); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 610.19
//
Query:       CTQ28594.1  [L=136]
Description: putative esterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-15   57.1   0.5    2.4e-15   56.6   0.5    1.2  1  4HBT      Thioesterase superfamily
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.13   12.4   0.0    1.4  1  DUF4442   Domain of unknown function (DUF4442)


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.5   2.7e-19   2.4e-15       1      79 []      50     127 ..      50     127 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 2.7e-19
                 TSSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEEE CS
        4HBT   1 gGvvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrlva 79 
                 +G +hgG+ + l+++ +++a   +  +++ vv++e +++++r++r g +++  ++ l++g++ +v+++e++de+ rl++
  CTQ28594.1  50 FGLLHGGASVVLAETLGSVAGYLCSEGEQKVVGLEVNANHIRSARGG-RVRGVCKALHVGTRHQVWQIEIFDEQSRLCC 127
                 699********************************************.****************************997 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.5e-05      0.13      19      63 ..      24      68 ..      20     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.5e-05
                G--EEEEEETTEEEEEE---GGGB-TTSSB-HHHHHHHHHHHHHH CS
     DUF4442 19 vgprieelepgraevrlkkrrrvrNhigtvHAiAicnlaElamGl 63
                + +r+e+++ +  e++++   r++  +g +H++A + laE+  ++
  CTQ28594.1 24 LDIRFETVTDDTLEATMPVDSRTQQPFGLLHGGASVVLAETLGSV 68
                5799************************************97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       238  (0.0132746); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1074.20
//
Query:       CTQ28595.1  [L=1018]
Description: putative conserved FAD-linked oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-66  221.9   0.0    1.6e-65  221.3   0.0    1.4  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
      6e-38  129.7   0.0    1.4e-37  128.5   0.0    1.7  1  FAD_binding_4  FAD binding domain
    6.8e-13   48.9   0.9    1.6e-12   47.6   0.9    1.7  1  Fer4_8         4Fe-4S dicluster domain
      0.001   19.1   0.2     0.0079   16.3   0.0    2.3  2  BBE            Berberine and berberine like
     0.0019   17.9   0.3     0.0042   16.8   0.3    1.5  1  Fer4_20        Dihydroprymidine dehydrogenase domain II, 4Fe-
     0.0034   17.9   4.3      0.037   14.6   4.3    2.4  1  Fer4_17        4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.031   14.4   0.1      0.065   13.4   0.1    1.4  1  Fer4_18        4Fe-4S dicluster domain
       0.04   14.5   0.2       0.04   14.5   0.2    1.8  2  Fer4_7         4Fe-4S dicluster domain
       0.47   10.6   5.3        1.2    9.3   3.2    1.9  2  Fer4_10        4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.3   0.0   7.9e-69   1.6e-65       1     250 []     281     539 ..     281     539 .. 0.98

  Alignments for each domain:
  == domain 1  score: 221.3 bits;  conditional E-value: 7.9e-69
                    --SEEEEEEEEESSHHHHHHHHHHHHHHT---SEEEEE-HHHHHHHHHTS-SS.......TTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT CS
  FAD-oxidase_C   1 lpearavalvafpsfeaavkavreiaqagiipaalelmdkkaldlveatkgak.......kglpdeeealllvefegddeeeaeeelealveaile 89 
                    lp++r++++v+++sf++a++ ++ +++a  + +++e++d+k l+l+++++ ++       + +++e+  l++vef+gdd++ ++++++ ++++ l+
     CTQ28595.1 281 LPKVRRLVNVKYDSFDSALRNAPFMVEA--KALSVETVDSKVLNLAREDIVWHsvselitDVPDKEMLGLNIVEFAGDDAALIDQQVT-TLCQRLD 373
                    599*************************..**********************************************************.******* PP

                    -EEEEE................ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEEETTEEEEEEEEEE CS
  FAD-oxidase_C  90 atgaad......vlvaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyglevvlfgHagdgnlhlyilfdl 179
                    + +aa+       +v+ d + +e+++++Rk+a+ +l +a+++a+++++ eDt+vP+++lad++ +++alld++gl++ +fgH++ g+lh+++++d+
     CTQ28595.1 374 ELMAASeagvigWQVCHDLEGVERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLADYIVEFRALLDSHGLSYGMFGHVDAGVLHVRPALDM 469
                    ****999987644*********************************************************************************** PP

                    E..--TT--THHHHHHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT-- CS
  FAD-oxidase_C 180 adeaeeeraeklvdevvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgkv 250
                    +d+++e  +++++devv+l++++gG ++gEHG G++ + y + ++ge+++a +r+iKa++DP++ LNPgk+
     CTQ28595.1 470 CDPQQEILMKQISDEVVALTAKYGGLLWGEHGKGFRAE-YSPAFFGETLYAELRKIKAVFDPDNRLNPGKI 539
                    ***********************************988.******************************96 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.5   0.0     7e-41   1.4e-37       1     138 [.      52     192 ..      52     193 .. 0.97

  Alignments for each domain:
  == domain 1  score: 128.5 bits;  conditional E-value: 7e-41
                    EEEEEEESSHHHHHHHHHHHHHCTSC...EEEESSSTTEESTTCSCCEEEEEETT.S--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGG CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneaglp...vlvrGgGssllgqavatggvvldlsr.lnrileideeegtatveaGvtlgdlvealaakglllglep 92 
                    p+av++p+s+++va + r+a+e + +   +++rGgG++++gqa+ +gg+++d+sr +nri+ei++eeg+++veaGv+ ++l+++l+++g+++ +e 
     CTQ28595.1  52 PDAVIFPRSTADVALLARVAAEPRFKsliFTPRGGGTGTNGQAL-NGGIIVDMSRyMNRIIEINPEEGWVRVEAGVIKDQLNQFLKPYGYFFAPEL 146
                    89********************9666666**************8.*************************************************** PP

                    GTTCGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  93 gsgipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                    ++ +++t+GG+i t a+G+gs +yG+++d+vlgl++vl  G ++++
     CTQ28595.1 147 STSNRATLGGMINTDASGQGSLVYGKTSDHVLGLRAVLMGGDILDT 192
                    ******************************************9986 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.9   8.3e-16   1.6e-12       3      65 .]     576     687 ..     574     687 .. 0.95

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 8.3e-16
      Fer4_8   3 ekCieCgaCq......saCpvlrrtkkhlldargeaaedvqeeqvlee............................................eealwsC 51 
                 ++C+++g+C+       +Cp+++ +++++++++g+a+  v+e+ +l +                                            +ea+  C
  CTQ28595.1 576 MECNGNGLCFnfdvksPMCPSMKVSNQRIHSPKGRATL-VREWLRLLAdrgvdpnqlekalpeqgvslrslvartrnswharkgeydfshevKEAMSGC 673
                 78**********999999********************.999999888999999999999999999999999999************************ PP

      Fer4_8  52 ttcgaCtevCpvgi 65 
                 ++c+aC+++Cp++i
  CTQ28595.1 674 LACKACSTQCPIKI 687
                 ***********997 PP

>> BBE  Berberine and berberine like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.69   1.4e+03      23      44 ..     232     253 ..     230     253 .. 0.86
   2 !   16.3   0.0     4e-06    0.0079      13      37 ..     507     532 ..     471     535 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.69
                 HHHHHHHHHHH-TT--S--TT- CS
         BBE  23 ferLvkvKtkyDPdNvFrneqs 44 
                 f++L +  t yD ++vF+ e+s
  CTQ28595.1 232 FPKLNRFLTGYDLRHVFNDEMS 253
                 7888888899********9987 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 4e-06
                 HHHHHHHGGG.HHHHHHHHHHH-TT- CS
         BBE  13 ewgerYFggN.ferLvkvKtkyDPdN 37 
                 e+  ++Fg+  ++ L+k+K+ +DPdN
  CTQ28595.1 507 EYSPAFFGETlYAELRKIKAVFDPDN 532
                 89999***888**************9 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   2.1e-06    0.0042       8      45 ..     656     692 ..     649     700 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.1e-06
                 SB----HHHHHHHH.TT----TT-HHHHCSTT---HHHH CS
     Fer4_20   8 valglteeealeeA.sRClqCkkapcvkgCPveidipef 45 
                  + +++ ++ ++eA s Cl C  + c+++CP++id+pef
  CTQ28595.1 656 RKGEYDFSHEVKEAmSGCLAC--KACSTQCPIKIDVPEF 692
                 55666766667777468****..78*************9 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   4.3   1.9e-05     0.037       2      61 .]     578     688 ..     577     688 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.9e-05
     Fer4_17   2 CiqCgyClp......eCpsyeaydnepkkllraakl..........................................glleeaeke..........ek 42 
                 C++ g C +      +Cps++  +++ +++  +a+l                                                  +          e+
  CTQ28595.1 578 CNGNGLCFNfdvkspMCPSMKVSNQRIHSPKGRATLvrewlrlladrgvdpnqlekalpeqgvslrslvartrnswhaR-------KgeydfshevkEA 669
                 6667777666666667777777666544444444444444445666666665555555555554544443333333222.......022333444558* PP

     Fer4_17  43 aslCieCgeCerkCPqgld 61 
                 +s C+ C+ C+++CP ++d
  CTQ28595.1 670 MSGCLACKACSTQCPIKID 688
                 ***************8876 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.3e-05     0.065      51      77 ..     663     689 ..     644     695 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.3e-05
     Fer4_18  51 eerkekgagdcidcescvkvcPtgidi 77 
                  ++ +++++ c++c++c + cP++id+
  CTQ28595.1 663 SHEVKEAMSGCLACKACSTQCPIKIDV 689
                 4455788999****************8 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       5.8   1.2e+04      35      49 ..     575     595 ..     539     598 .. 0.57
   2 ?   14.5   0.2     2e-05      0.04      29      50 ..     664     685 ..     632     687 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.8
      Fer4_7  35 pekClgCgaCva......vCP 49 
                 +++C g g C +       CP
  CTQ28595.1 575 AMECNGNGLCFNfdvkspMCP 595
                 355666666665444444555 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2e-05
      Fer4_7  29 ekveidpekClgCgaCvavCPt 50 
                 ++v+  ++ Cl C+aC + CP 
  CTQ28595.1 664 HEVKEAMSGCLACKACSTQCPI 685
                 667788999************6 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.6    0.0014       2.8      27      56 .]     655     684 ..     575     684 .. 0.72
   2 ?    9.3   3.2   0.00059       1.2       7      21 ..     671     685 ..     664     704 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0014
     Fer4_10  27 gakgeaseeeavrkkvekCtgcgaCveaCP 56 
                   kge++ + +v+++++ C +c aC  +CP
  CTQ28595.1 655 ARKGEYDFSHEVKEAMSGCLACKACSTQCP 684
                 5567777788888899*************9 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00059
     Fer4_10   7 dtCirCgkCvkaCPa 21 
                 + C+ C++C + CP 
  CTQ28595.1 671 SGCLACKACSTQCPI 685
                 557888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1018 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 7063.49
//
Query:       CTQ28596.1  [L=370]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-57  195.7  38.7    1.2e-57  195.5  38.7    1.0  1  AI-2E_transport  AI-2E family transporter


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5  38.7   6.8e-62   1.2e-57       2     326 ..      15     344 ..      14     345 .. 0.98

  Alignments for each domain:
  == domain 1  score: 195.5 bits;  conditional E-value: 6.8e-62
  AI-2E_transport   2 llilvllllllalypfiselllplliAlvlayllnpvvkfL.kkrgvkrvlavllvlllllvllvllvlllvplliaqltqlvkslp..ayids 92 
                      l++l+l+l+++ +++++++++l +++A+ ++++++pv  +L ++ + kr lavl+++lll++l+v++++llv++l++ +  l+k ++  +++  
       CTQ28596.1  15 LSVLFLALIIISCLWVVQPFILSFAWAGTVVIATWPVLLRLqRVLFGKRLLAVLAMTLLLFLLFVIPIALLVNSLVDNSVPLIKLISsgNVTLP 108
                      799**************************************99********************************************7777888 PP

  AI-2E_transport  93 lqnilnelpslleele.nliqalkqslskilsnilssi...lnsllsllasllglilslvlvllllffllldgeklrqgilkllpervrervka 182
                        ++ln++p   ++l+  ++  l++  s+i+++++++i   ++++++ +a++++l++++ l+ll++ +l+++ge++  g++ ++++   +r +a
       CTQ28596.1 109 DFAWLNSVPLVGDKLYsAWHGLLDMGGSAIMAKVRPYIgttTSWFVGQAAHIGKLLVYCGLMLLFSALLYWRGEQVAYGFRYFATRLAAKRGDA 202
                      889*************66********************9999**************************************************** PP

  AI-2E_transport 183 ilrelektlsgylrgqvlvaliigvlvfigllilgvpyalllailvglanliPyiGavivlipiaiialltggikevlivlivvllvqliegni 276
                      ++  + +++++++ g+v++al ++vl++igl++ gvpya ll++++++++ +  +G+++vl+p +i++++ g+ +++ +vl+v+  v+ +++n+
       CTQ28596.1 203 AVLLAGQAVRAVALGVVVTALTQAVLGGIGLAVSGVPYAALLTVVMIFTC-LVQLGPLLVLVPSIIWLYWSGD-TTWGTVLLVWSCVVGTMDNV 294
                      **************************************************.67********************.******************** PP

  AI-2E_transport 277 lePklmgkrlglhplvillsllaggklfGlvGlilavpltavikaileay 326
                      ++P l++++++l+ ++il+ +++g+  fG++Gl+++++l+av +++++a+
       CTQ28596.1 295 IRPVLIRMGADLPMILILTGVIGGLIAFGMIGLFIGPVLLAVSWRLYDAW 344
                      ************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2620.71
//
Query:       CTQ28597.1  [L=792]
Description: phosphoenolpyruvate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-120  402.0   0.3   2.9e-120  401.5   0.3    1.2  1  PPDK_N           Pyruvate phosphate dikinase, PEP/pyruvate bi
    6.3e-60  202.8   0.0    1.3e-59  201.7   0.0    1.4  1  PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
    5.5e-27   93.3   0.3    1.8e-26   91.6   0.3    2.0  1  PEP-utilizers    PEP-utilising enzyme, mobile domain
  ------ inclusion threshold ------
      0.036   13.3   0.0       0.16   11.1   0.0    2.1  3  Polysacc_deac_2  Divergent polysaccharide deacetylase
      0.056   12.6   0.3       0.25   10.4   0.0    2.3  3  HpcH_HpaI        HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> PPDK_N  Pyruvate phosphate dikinase, PEP/pyruvate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  401.5   0.3    8e-124  2.9e-120       2     321 ..      22     350 ..      21     357 .. 0.96

  Alignments for each domain:
  == domain 1  score: 401.5 bits;  conditional E-value: 8e-124
      PPDK_N   2 elvGGKganLael...lneagipvPpgfaitadafrefleengleekideelkeldvddvdelrkaskeirelilsaelPeeleeaikeayeelgkkfg 97 
                 + vGGK+a+L+e+   l+  g++vP+gfa+tadaf++fl+++g++++i ++l+e+d+ddv++l+ka+++ir++i+++++ +ele+ai++ay+ l++  +
  CTQ28597.1  22 DRVGGKNASLGEMitnLSGMGVSVPNGFATTADAFNQFLDQSGVNQRIYALLDETDIDDVSALAKAGAQIRQWIIDTPFQSELENAIRDAYDLLSA--D 118
                 67***********97777788*************************************************************************86..7 PP

      PPDK_N  98 deelpvaVRSSataEDlpkasfaGqqdtyLnvggeeevleaikavfaSlfnerAilYrkekgldheevalavvvqkmvnsdlgasGVafsldpetGfkd 196
                 d+e ++aVRSSataED+p+asfaGqq+t+Lnv+g ++vl a+k+vfaSlfn+rAi+Yr ++g+dh  val+++vq+mv+sdl++sGV+fs+d+e+Gf++
  CTQ28597.1 119 DAEASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAVKHVFASLFNDRAISYRVHQGYDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQ 217
                 7789*********************************************************************************************** PP

      PPDK_N 197 evlinasyGlGeaVVaGrvtpdefvvekstrk.....ilekkigekeikivydekeeg...tkevevpeeereklaLsdeeveeLaeiakkiekhygtp 287
                 +v+i++++GlGe VV+G+v+pdef+v+k+t       i+++++g+k+i++vy + +e+   ++ ++vp+++r+ ++Ls+eev+eLa+ a +iekhyg+p
  CTQ28597.1 218 VVFITSAWGLGEMVVQGAVNPDEFYVHKPTLAagrpaIVRRTMGSKKIRMVYAPTQEHgkqVRIEDVPQAQRDIFSLSNEEVQELAKQAVQIEKHYGRP 316
                 *******************************99*******************999888677888889******************************** PP

      PPDK_N 288 mdiEfaideeegklyllQaRpetrtsekkekkaa 321
                 mdiE+a+d+++gkl+++QaRpet++s+ ++ +  
  CTQ28597.1 317 MDIEWAKDGHTGKLFIVQARPETVRSRGQVMERY 350
                 *************************998876655 PP

>> PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.7   0.0   3.8e-63   1.3e-59      20     286 ..     484     784 ..     473     791 .. 0.90

  Alignments for each domain:
  == domain 1  score: 201.7 bits;  conditional E-value: 3.8e-63
                      CEEEEEESSCHHHHHHHHCTXSSEEEEEHHHHCTTS..CCHHHHHH.............................HHHHHHHHHHHTTTSEEEE CS
  PEP-utilizers_C  20 ikvlaNidtpedaekalengaeGiGLlRtEflfmar..eelpteee.............................qaeaykkvleamngrpvvv 82 
                      +kv++N+++p+ a   +  + eG+GL R Ef+++ +   ++ ++ e                             ++e ++++ +a++++ v+v
       CTQ28597.1 484 LKVMMNVGNPDRAFDFACLPNEGVGLARLEFIINRMigVHPRALLEfddqepglqneirelmkgydsprefyvgrLTEGIATLGAAFYPKRVIV 577
                      79*******************************9985333666666889********************************************* PP

                      EXXXSSCCGGSGGC...HHHH.XSXGGGSSXTHHHHCCS..HHHHHHHHHHHHHHCCCC...EEEEEESSXXSHHHHHHHHHHHHHHHHHHHHC CS
  PEP-utilizers_C  83 RtlDiggdkelpel...keepeevNPmlGfRgirlglse..pelfetqlrAllrasaag...kleimlPmvasveeleeakkiieevkeeleke 168
                      R+ D+++++  + +    +epee+NPmlGfRg  +++se  ++ f  +  A++r++  +   ++e+m+P+v++v    +ak+++ee +++  k+
       CTQ28597.1 578 RLSDFKSNEYANLVggeRYEPEEENPMLGFRGAGRYVSEsfRDCFALECEAMKRVRNDMgltNVEVMVPFVRTVA---QAKAVVEELERQGLKR 668
                      ********654443446799***************9999899***************54456**********986...5777777764443333 PP

                      TCTXXTTXEEEEEEXSHHHHHTHHHHCTTSSEEEEXHHHHHHHHHTXXCCCHCHHHHSXTTTCHHCCCHHHHHHHHHHCCXEEEEESCCCCS.C CS
  PEP-utilizers_C 169 gvkkkkkvkvGiMiEvpsaalladklakevdFfSiGtNDLtQytlavdRdneevaklydplepavlrlikevikaaeekglkvgiCGelagd.p 261
                          ++++k+ +M E+ps alla++++++ d+fSiG+ND+tQ++l++dRd+  v++l+d+ + av++l+++ i+aa+++g+ vgiCG+ ++d +
       CTQ28597.1 669 ---GENGLKIIMMCEIPSNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVSELFDERNDAVKALLSMAIRAAKKQGKYVGICGQGPSDhE 759
                      ...4789************************************************************************************626 PP

                      CCHHHHHHCTXSEEEEXGGGHHHHH CS
  PEP-utilizers_C 262 savellvglGldelSmsaasvpaar 286
                        +++l++ G+d+lS++++ v ++ 
       CTQ28597.1 760 DFAAWLMEEGIDSLSLNPDTVVQTW 784
                      6899****************98875 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.3     5e-30   1.8e-26       2      73 .]     386     457 ..     385     457 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 5e-30
                    --S-EEEEES---HHHHTTS-GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.HH--TEEEEEETTTT CS
  PEP-utilizers   2 leegvILvaeetspsdiagldkaaGivterGGmtSHaAivArelgiPaVvgvgeatielkegdlitvDgstG 73 
                    +e+g++Lv+++t+p++ + ++ka++ivt+rGG+t+HaAi+ArelgiPaVvg+g+at +++e++ +tv +++G
     CTQ28597.1 386 IEPGDVLVTDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATDRIQENQNVTVSCAEG 457
                    789******************************************************************998 PP

>> Polysacc_deac_2  Divergent polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.86   3.1e+03      39      91 ..      85     138 ..      80     141 .. 0.80
   2 ?   -3.4   0.0       1.2   4.4e+03     141     169 ..     282     310 ..     273     314 .. 0.70
   3 ?   11.1   0.0   4.5e-05      0.16     123     197 ..     694     766 ..     681     776 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.86
                      HHHHHCT-EEEEEEEE--TTTTT.---TT-B-TTS-HHHHHHHHHHHHCCSTT- CS
  Polysacc_deac_2  39 eaaraaghevllhlPmepksypk.dpgpgaLlvsmseeeiekrleaalsrvpga 91 
                      ++a a+ ++ ++  P +++ +++ +   + L  ++ e+  + r +a  +++p a
       CTQ28597.1  85 AKAGAQIRQWIIDTPFQSELENAiRDAYDLLSADDAEASFAVRSSATAEDMPDA 138
                      567778889999999999998888888888888888888888888888888877 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.2
                      CT--EEE-SEE.TTSS-SHHHHHHHHHHHH CS
  Polysacc_deac_2 141 lgvpvaerdvf.LDnetdeaairkqlkkla 169
                      + vp a+rd+f L ne+ ++++ kq  +++
       CTQ28597.1 282 EDVPQAQRDIFsLSNEE-VQELAKQAVQIE 310
                      57899999998555555.777777766655 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 4.5e-05
                      EEE-S--TT-SHHHHHHHCT--EEE-SEETTSS-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCCHHHHHHHHHH CS
  Polysacc_deac_2 123 flDsrtsaksvaakvakelgvpvaerdvfLDnetdeaairkqlkklaklakkkGsaiaighprpetieaLkewlp 197
                      ++D  ++  + + ++a  l   ++  +   D+++  +a+++ l  +++ akk+G+ ++i+  +p   e  ++wl 
       CTQ28597.1 694 YFDGFSIGSNDMTQLALGLDRDSGVVSELFDERN--DAVKALLSMAIRAAKKQGKYVGICGQGPSDHEDFAAWLM 766
                      5565566666666666666666666777777766..8***************************99999999985 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.86   3.1e+03     193     215 ..      76      98 ..      46      99 .. 0.82
   2 ?   -2.4   0.0      0.59   2.1e+03     189     204 ..     203     218 ..     148     231 .. 0.54
   3 ?   10.4   0.0   7.1e-05      0.25      87     165 ..     642     717 ..     627     771 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.86
                 SSHHHHHHHHHTTHCEEEEEEHH CS
   HpcH_HpaI 193 sdiddaegflaegalfvalGfdg 215
                 +didd++++ ++ga++ ++ +d+
  CTQ28597.1  76 TDIDDVSALAKAGAQIRQWIIDT 98 
                 68999999999999999998775 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.59
                 E.E-SSHHHHHHHHHT CS
   HpcH_HpaI 189 dtvasdiddaegflae 204
                 ++v++ id ++gf + 
  CTQ28597.1 203 SGVMFSIDTESGFDQV 218
                 2233444444444444 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 7.1e-05
                 EEEESS--SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHH.HTT-TTSTT CS
   HpcH_HpaI  87 vvlvPkvetaeealevvsalrepekgirganketrllaqiEsaegvknaeeIaavegldgvflGaeDlsa.dlgtkrspe 165
                  v+vP+v t ++a++vv+ l++     + +  ++ +++ i s++ +   e+   +e  dg  +G++D +  +lg+ r+++
  CTQ28597.1 642 EVMVPFVRTVAQAKAVVEELERQGLKRGENGLKIIMMCEIPSNALLA--EQ--FLEYFDGFSIGSNDMTQlALGLDRDSG 717
                 59********************9977777778999999998876543..33..345567777777776532666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.39
# Mc/sec: 6087.98
//
Query:       CTQ28598.1  [L=55]
Description: hypothetical protein CH1034_240095 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       161  (0.00897987); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 449.96
//
Query:       CTQ28599.1  [L=277]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-72  242.9   0.0    4.9e-72  242.8   0.0    1.0  1  Kinase-PPPase  Kinase/pyrophosphorylase


Domain annotation for each model (and alignments):
>> Kinase-PPPase  Kinase/pyrophosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.8   0.0   2.8e-76   4.9e-72       1     255 []       9     267 ..       9     267 .. 0.94

  Alignments for each domain:
  == domain 1  score: 242.8 bits;  conditional E-value: 2.8e-76
  Kinase-PPPase   1 ifvvSdstGetaeavaraalaqFeevevelevlpfvkteekleevleeake.ee.....aivvyTlvdeelrealeeaaeekgveavdllgpllea 90 
                    +f++Sd+t++tae +++a+++qF+ v ++  +lpfv++ +++++v e++++  +     ++v+y++v +e+r+++  ++e     + d+++ l+++
     CTQ28599.1   9 VFYISDGTAITAEVLGHAVMSQFP-VAISSVTLPFVENISRARAVKEQIDAiYQqtgirPLVFYSIVIPEIRDII-LQSEG---FCQDIVQALVAP 99 
                    89*********************9.9999999****99999999999995533357999****************.55566...8*********** PP

  Kinase-PPPase  91 leeelgvkpkeepgllhkl....dedYfkrieAieFalkhDDGkkprklkeADivLvGvSRtsKTPlSlyLaq.kglkvaNvPLvpe....lelpk 177
                    l++el+ +p++ ++++h l      +Y +ri+Ai+++l+hDDG + r+l++A+++L+GvSR++KTP+SlyLa+ +g+++aN+P++ +    l lp+
     CTQ28599.1 100 LQQELNLDPTPVAHRTHGLnpgnLIKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSRCGKTPTSLYLAMqYGIRAANYPFIADdmdnLVLPA 195
                    ******************96655579***********************************************9************8788899*** PP

  Kinase-PPPase 178 elfevdkkkvfgLtidperLveiRkeRlkslglksesYadlerveeeleeaeklfrklgipvidvtnksiEetAaeil 255
                    +l +  ++k+fgLti+perL++iR+eR++    +s +Ya+l++++ e++e+e+l+rk++ip++++tn s+Ee+A++i+
     CTQ28599.1 196 SL-KPLQHKMFGLTINPERLAAIREERRE----NS-RYASLRQCRMEVTEVEALYRKNKIPCLNSTNYSVEEIATKIM 267
                    **.9999**********************....77.9****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2165.20
//
Query:       CTQ28600.1  [L=348]
Description: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.1e-105  350.3   0.0   6.2e-105  350.0   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family
  ------ inclusion threshold ------
       0.14   11.9   0.2        1.3    8.8   0.0    2.3  2  DBD_HTH       Putative DNA-binding domain


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.0   0.0  6.9e-109  6.2e-105       8     274 ..      39     337 ..      23     338 .. 0.97

  Alignments for each domain:
  == domain 1  score: 350.0 bits;  conditional E-value: 6.9e-109
                   H...HHCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S.SSTTS-SHTTHHHTHHHHHHHHHHH............ CS
  DAHP_synth_1   8 a...adiliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKpRrstvgfkGlindpdlkilsrikkel............ 89 
                   +   ++il+G+d rllvi+GPCsi+d +aaleyA+rl+ ++e+++ +lei+mr+yfeKp r++vg+kGli+dpdl++++r+++++            
    CTQ28600.1  39 RrriEKILNGEDRRLLVIIGPCSIHDTDAALEYARRLQGMRERYQPQLEIVMRTYFEKP-RTVVGWKGLISDPDLNGSYRVNHGIelarrlllqvne 134
                   144579*****************************************************.************************************* PP

                   .T-EEEEEESSCCTHHHHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TT....HHHHHHHHHHHHHHHTTE.........EE--EEEEEEE CS
  DAHP_synth_1  90 .glpiatevldpisvqyladvvdiiqiGArttesqdllelasglskpvglKngtd....vaidemkaaaekilflgv.........etkgiilcerg 172
                    g+p+ate+ld+++ q++ad++++++iGArttesq ++e+as+ls+pvg+Kngtd    +a+d+++a++++++fl+          +t+g+++++++
    CTQ28600.1 135 lGVPTATEFLDMVTGQFIADLISWGAIGARTTESQIHREMASALSCPVGFKNGTDgntrIAVDAIRASRASHMFLSPdkqgqmtiyQTSGNPYGHII 231
                   ************************************************************************************************* PP

                   EEESTSSSSSCHCHHHHHHHHHHCTSS.-EEEESCHHHTTCGGGGHHHHHHHHHHHHHTT...ESEEEEEBBSSCCC-SSTGGGGBBCTCBHHHHHH CS
  DAHP_synth_1 173 lrggkktnrdvedvaavkilkeetgkl.pvmvDvsHansrkdykrqkkvlklakaaiaaG...iaGvmiEshlnpgkalsdgkqalkygksetdaci 265
                   +rggk +n+++ed+aa+ ++++e++ + +++vD+sH+n++k+++rq +v+++++++i+aG   iaG+m+Es+l++g++++  +q+l+ g+s+td c+
    CTQ28600.1 232 MRGGKRPNYHAEDIAAAGEALREFDLPeQLVVDFSHGNCQKQHRRQLEVCADICQQIRAGstaIAGIMAESFLQEGTQKVVPGQPLTWGQSITDPCL 328
                   ************************6669********************************************************************* PP

                   HHHHHHHHH CS
  DAHP_synth_1 266 lkeltelll 274
                   ++e++e+ll
    CTQ28600.1 329 SWEDSERLL 337
                   ****99875 PP

>> DBD_HTH  Putative DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00015       1.3       2      23 ..      36      57 ..      36      59 .. 0.80
   2 ?    0.3   0.0      0.07   6.3e+02       5      10 ..     275     280 ..     274     283 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00015
     DBD_HTH  2 STrRrqLdklLDsldDkeLsii 23
                S+ Rr+++k+L+  d + L+ii
  CTQ28600.1 36 SASRRRIEKILNGEDRRLLVII 57
                889*********8666666665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.07
     DBD_HTH   5 RrqLdk 10 
                 RrqL++
  CTQ28600.1 275 RRQLEV 280
                 *****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2761.11
//
Query:       CTQ28601.1  [L=75]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-17   61.5   0.5    7.5e-17   60.8   0.5    1.3  1  hemP      Hemin uptake protein hemP


Domain annotation for each model (and alignments):
>> hemP  Hemin uptake protein hemP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.5   4.2e-21   7.5e-17       2      37 .]      40      75 .]      39      75 .] 0.98

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 4.2e-21
                EEHHHHTTSSSEEEEEETTEEEEEEE-TTS-EEEE- CS
        hemP  2 idSreLlgggrevlIeHgGetYrLRiTrngKLILTK 37
                i+Sr Llg++++v+IeHgG++Y LR+T +gKLILTK
  CTQ28601.1 40 ISSRVLLGSEGRVVIEHGGQRYLLRQTHAGKLILTK 75
                89*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 577.15
//
Query:       CTQ28602.1  [L=480]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.4e-158  527.8   0.0   2.7e-158  527.6   0.0    1.0  1  UPF0061          Uncharacterized ACR, YdiU/UPF0061 family
  ------ inclusion threshold ------
      0.051   13.7   1.6       0.42   10.7   0.2    2.6  3  Ubiq_cyt_C_chap  Ubiquinol-cytochrome C chaperone


Domain annotation for each model (and alignments):
>> UPF0061  Uncharacterized ACR, YdiU/UPF0061 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  527.6   0.0    3e-162  2.7e-158       4     466 ..       2     451 ..       1     453 [. 0.96

  Alignments for each domain:
  == domain 1  score: 527.6 bits;  conditional E-value: 3e-162
     UPF0061   4 kleyepaleslgsdfydeveaaefpkkilrvrndalleelgldeeevkdeelieifgke...kgiepflalrYhGyQFGeynpqLGDGRgfllgqvrdk 99 
                 +l+++++++++  dfy+ ++++ +++ +l++rn  l+++lg+ ++ +  e+ + ++g+e    g++p+ a++Y+G+QFG +++qLGDGRg+llg+ +  
  CTQ28602.1   2 TLSFTTHWRDELPDFYTSLSPTPLDNARLIWRNAPLAQQLGVPDALFAPESGAGVWGGEallPGMSPL-AQVYSGHQFGAWAGQLGDGRGILLGEQQLA 99 
                 789********************************************************9999****9.****************************** PP

     UPF0061 100 dgelydfglKGsGlTPySRsaDGrlvLksgvREvlasealhklgvrtsralslietgekllRedePspersavvvRlarshiRfGtferlkylkrldll 198
                 dg+ yd++lKG+GlTPySR++DGr+vL+s++RE lasea+h+lg++t+ral ++++++ ++Re     e++a+++R+a+sh+RfG+fe+++y+++++++
  CTQ28602.1 100 DGRRYDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHALGIPTTRALAMVTSDTPVYRE---RVEPGAMLMRVAESHVRFGHFEHFYYRREPQKV 195
                 ***************************************************************...********************************* PP

     UPF0061 199 kkLldyvieeyypeladeeekyaqfyaelvervAelvAqWmaaGFchgVlNTDNmsilGeslDYGPyaFldkydpkftaayfDyagrYsyanQpsiilw 297
                 ++L+dyvi++++p+l+de++ky ++++++v r+A+++A+W+++GF+hgV+NTDNmsilG+++DYGPy+Fld+++p+f+++++Dy+grYs++nQp++ lw
  CTQ28602.1 196 QQLADYVIRHHWPQLQDEADKYLLWFRDIVMRTAQTIASWQTVGFAHGVMNTDNMSILGLTIDYGPYGFLDDFQPDFICNHSDYQGRYSFENQPAVGLW 294
                 *************************************************************************************************** PP

     UPF0061 298 NLeqlaeplallieaeeleealeeykevyttkYaqlmlkkLGleklsekekefdselleellelLqetqvdYneffveLaeskskkwrdeaesileese 396
                 NL++la++l+ +i+ae+l++al+ey++ + t+Y q m+ kLGl     ++++ d++ll+ l++l+ +++ dY+++f+ L++s++ ++++  +       
  CTQ28602.1 295 NLQRLAQSLSPFISAEALNAALDEYQHALLTAYGQRMRDKLGL----FSQQKGDNDLLDGLFALMIREKSDYTRTFRLLSHSEQLSAASPLRD------ 383
                 *******************************************....56666679*************************9988776643332...... PP

     UPF0061 397 keleeekleeWrelYkklleeleedeleeraerlkkvNpktvllrplieeviekiaeeddlsplkkllek 466
                 + ++++++++W + Y+++l++++  + ++r++r++ vNp++vl+++l++++ie+ ae  d+ +l++l+ +
  CTQ28602.1 384 EFIDRAAFDSWFAGYRARLRDEQV-DDAQRQQRMQGVNPALVLRNWLAQRAIEQ-AEAGDMGELERLHAA 451
                 3467899*************8766.77899************************.9**********9976 PP

>> Ubiq_cyt_C_chap  Ubiquinol-cytochrome C chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.036   3.2e+02     106     124 ..     189     207 ..     119     218 .. 0.84
   2 ?   -3.5   0.0       1.1     1e+04      35      44 ..     317     326 ..     300     336 .. 0.54
   3 ?   10.7   0.2   4.6e-05      0.42      34      97 ..     383     453 ..     350     465 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.036
  Ubiq_cyt_C_chap 106 evdleklaglvgyvraqla 124
                       ++++k+++l+ yv++  +
       CTQ28602.1 189 RREPQKVQQLADYVIRHHW 207
                      4589999999999999765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.1
  Ubiq_cyt_C_chap  35 reieqelldk 44 
                      +e++ +ll +
       CTQ28602.1 317 DEYQHALLTA 326
                      3344444444 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 4.6e-05
  Ubiq_cyt_C_chap  34 greieqelldkffedvdeklreegvgdlsvpkrmkkl......aeafygrllaydealgs.ddaaLaaalw 97 
                      ++ i ++ +d  f   +++lr+e+v d ++++rm+        ++ +++r+++  ea++    ++L aal+
       CTQ28602.1 383 DEFIDRAAFDSWFAGYRARLRDEQVDDAQRQQRMQGVnpalvlRNWLAQRAIEQAEAGDMgELERLHAALA 453
                      47899999***************************994333334444555566666665567777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3378.02
//
Query:       CTQ28603.1  [L=154]
Description: putative peptidase lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-30  103.7   0.0      6e-30  103.4   0.0    1.1  1  NLPC_P60  NlpC/P60 family
      0.007   16.1   0.0      0.029   14.0   0.0    1.8  2  DUF1175   Protein of unknown function (DUF1175)
  ------ inclusion threshold ------
       0.13   12.8   0.0       0.22   12.1   0.0    1.4  1  CHAP      CHAP domain


Domain annotation for each model (and alignments):
>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0     1e-33     6e-30       1     105 []      47     153 ..      47     153 .. 0.97

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 1e-33
                 T-BB-TT--BTTEB-HHHHHHHHHHTT.T----SSHHHHCCCSEE..EEGGG--TTEEEEESG..TGGESEEEEEEETTEEEEEE.TTEEEEEETTSTT CS
    NLPC_P60   1 gkpYrwGGkspsgfDCsglvryafaka.gielprssgeqeaagkkkeiskselkrGDLvffkt..kkgisHvgiYlgngkmlhas.sekvsvsslseky 95 
                 g pYr+GG++p+g+DCsg+v  +f++   ++lpr+++eq++ g++  i k++l +GDLvffkt  ++   HvgiY  +++++has s++v+ ssl++ y
  CTQ28603.1  47 GAPYRYGGMTPRGVDCSGFVVRTFRDKfALQLPRETREQAEIGTR--IDKRDLLPGDLVFFKTgsGESGLHVGIYDTDNQFIHAStSQGVTRSSLDNVY 143
                 78*************************9*****************..****************9888899***************************** PP

                 BHSCEEECCE CS
    NLPC_P60  96 wkkrllgvrr 105
                 w+k+++++rr
  CTQ28603.1 144 WNKKFWQARR 153
                 ******9987 PP

>> DUF1175  Protein of unknown function (DUF1175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.13   7.7e+02      54      65 ..      60      71 ..      53      89 .. 0.76
   2 !   14.0   0.0   4.9e-06     0.029     138     167 ..      93     122 ..      82     144 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.13
     DUF1175 54 rDCaglvryavr 65
                 DC+g+v  + r
  CTQ28603.1 60 VDCSGFVVRTFR 71
                7*****965554 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 4.9e-06
     DUF1175 138 dveqAkpgDllFfdqeddelPyHlmiylge 167
                 d +  +pgDl+Ff+ ++ e+  H+ iy  +
  CTQ28603.1  93 DKRDLLPGDLVFFKTGSGESGLHVGIYDTD 122
                 667779*********************666 PP

>> CHAP  CHAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.7e-05      0.22       9      71 ..      61     120 ..      50     133 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.7e-05
                 SHHHHHHHHHHHHSSSSSSS.ECTCCHHCEEEEEECSTBS--TTEEEEEETTTTBCT-.EEEEEE CS
        CHAP   9 qCvefaywrlrqaggnaddW.nnakkakgyknqanvgsstpkvGdivvfdrggeggyG.HVaiVe 71 
                 +C  f+   +r     a +  +  +++++ + +++ ++    +Gd+v+f+ g+++  G HV+i  
  CTQ28603.1  61 DCSGFVVRTFRDKF--ALQLpR--ETREQAEIGTRIDKRDLLPGDLVFFKTGSGE-SGlHVGIYD 120
                 56666633333221..333321..1122333333344444469******999954.788***964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1169.44
//
Query:       CTQ28604.1  [L=249]
Description: vitamin B12 transporter subunit : ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-22   80.1   0.0    3.5e-22   79.4   0.0    1.4  1  ABC_tran     ABC transporter
    1.7e-11   44.5   0.1    2.6e-06   27.5   0.1    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    8.3e-06   26.3   0.5    1.7e-05   25.2   0.5    1.5  1  AAA_16       AAA ATPase domain
    8.3e-05   22.1   0.1       0.27   10.6   0.1    2.1  2  SMC_N        RecF/RecN/SMC N terminal domain
    0.00032   20.4   0.0    0.00064   19.4   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
     0.0015   18.7   0.2      0.048   13.8   0.1    2.2  2  AAA_33       AAA domain
     0.0047   17.1   0.0     0.0096   16.1   0.0    1.6  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
     0.0048   16.8   0.0      0.041   13.8   0.0    2.0  2  RsgA_GTPase  RsgA GTPase
     0.0055   16.3   0.7      0.056   13.0   0.7    2.4  1  AAA_25       AAA domain
     0.0081   16.2   0.0      0.041   13.9   0.0    1.9  2  CCDC32       Coiled-coil domain containing 32
  ------ inclusion threshold ------
      0.016   15.5   0.4       0.14   12.4   0.4    2.1  1  AAA_22       AAA domain
      0.033   14.7   0.0      0.052   14.0   0.0    1.2  1  AAA_23       AAA domain
      0.057   13.1   0.3       0.62    9.8   0.1    2.2  2  AAA_30       AAA domain
      0.064   12.8   0.0       0.12   11.9   0.0    1.4  1  AAA_27       AAA domain
       0.12   12.7   1.3       0.32   11.4   0.7    2.1  2  EccE         Putative type VII ESX secretion system transloco
       0.14   11.8   0.0        1.3    8.6   0.0    1.9  2  AAA_15       AAA ATPase domain
       0.16   12.2   0.0       0.31   11.2   0.0    1.6  1  AAA_28       AAA domain
       0.19   11.3   0.4       0.35   10.5   0.1    1.6  2  SRP54        SRP54-type protein, GTPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0   3.5e-25   3.5e-22       4     137 .]      19     162 ..      16     162 .. 0.87

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 3.5e-25
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTCHHHHHHHSTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........esdeeiekalsklgl 94 
                  s  +++ge+v +vG+nGaGKStLl  +agl++   G+++++g+ l+e + ++l ++ g+l q+++    + v            +++++++++++lgl
  CTQ28604.1  19 FSAAFRAGEIVHLVGPNGAGKSTLLTRMAGLSD-GPGTVHFNGRLLDEWPARELARRRGYLCQHQTPPFAMPVWHYlalhmqqqGDSARLSDIAARLGL 116
                 678899*************************98.69****************************6555555566667887777778888********** PP

                 GGTTCBGESTTSGGS-HHHHHHHHHHHHHHH.......TSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxx RF
    ABC_tran  95 kelkdtvvksspssLSgGqkqrvalarallk.......kpkllllDEpta 137
                 +++  ++v    ++LSgG++qrv la+++l+       + +llllDEp++
  CTQ28604.1 117 DNKLGRPV----NQLSGGEWQRVRLAAVILQidplsnsAGQLLLLDEPMN 162
                 ********....****************98633333335699******86 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.3e-05     0.013       4      23 ..      31      50 ..      28      73 .. 0.81
   2 !   27.5   0.1   2.6e-09   2.6e-06     231     299 ..     121     193 ..      97     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
      AAA_21  4 liGpNgsGKSnLLdaldlla 23
                l+GpNg+GKS+LL  + +l+
  CTQ28604.1 31 LVGPNGAGKSTLLTRMAGLS 50
                8************8777765 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 2.6e-09
      AAA_21 231 elparelSdGtkrllalltallralkkg....sllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299
                  +p+++lS G  +  +l++ +l+ ++ +     lll+DEp n+L+ + ++ l +ll els+ g+ v++++H+ 
  CTQ28604.1 121 GRPVNQLSGGEWQRVRLAAVILQIDPLSnsagQLLLLDEPMNSLDVAQQAALDRLLHELSAAGIAVVMSSHDL 193
                 67999******9999**********999****************************999999*********94 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.5   1.7e-08   1.7e-05      24     170 .]      26     187 ..      13     187 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.7e-08
      AAA_16  24 pelvllsGesGvGKsslvrellralekdg.gif...lrgkcdql........esa........ipysa.laqalareellrqlldeaesaeleawrekl 101
                 +e+v l+G+ G GKs+l+++ +    + g ++f   l     +         +           p+++ ++ +l    l  q   +++  +  a+r  l
  CTQ28604.1  26 GEIVHLVGPNGAGKSTLLTRMAGLSDGPGtVHFngrL----LDEwparelarR-RgylcqhqtPPFAMpVWHYL---ALHMQQQGDSARLSDIAARLGL 116
                 389*******************766666544443332....333221123331.03444444477777788888...4444444444444555555556 PP

      AAA_16 102 eeala.avpelagaea..srllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrlleskpllvv 170
                 +  l+ +v++l+g e    rl++++ + ++ ls+ + +l+l+ + +  +d a++++l+ Ll++l++  ++vv
  CTQ28604.1 117 DNKLGrPVNQLSGGEWqrVRLAAVILQ-IDPLSNSAGQLLLLDEPMNSLDVAQQAALDRLLHELSAAGIAVV 187
                 666668999999999854444444444.46777767778888889******************998777775 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00061      0.61      26      41 ..      28      43 ..      19      47 .. 0.83
   2 !   10.6   0.1   0.00028      0.27     133     196 ..     123     189 ..      93     205 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00061
                EEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnll 41
                +  +vGpNG+GKs ll
  CTQ28604.1 28 IVHLVGPNGAGKSTLL 43
                6679*********987 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00028
                 STTCS-HHHHHHHHH.HHHHHHHCC..S--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE- CS
                 xxxxxxxxxxxxxxx.xxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 133 skelLSgGektLval.aLlfAiqkv..kpaplyllDeidaaLDeknvkkvaellkeksknaQfivis 196
                   ++LSgGe + v l a+++ i     +   l llDe    LD ++ +++ +ll+e s     +v+s
  CTQ28604.1 123 PVNQLSGGEWQRVRLaAVILQIDPLsnSAGQLLLLDEPMNSLDVAQQAALDRLLHELSAAGIAVVMS 189
                 4569*****7655551466666555005557*************************99764444443 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   6.4e-07   0.00064      20      55 ..      24      59 ..      17      61 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 6.4e-07
      AAA_29 20 dlkg.atlltGpsGsGKSTllDAiqalLvpakkvrfN 55
                + +g ++ l+Gp+G+GKSTll  ++ l  ++ +v+fN
  CTQ28604.1 24 R-AGeIVHLVGPNGAGKSTLLTRMAGLSDGPGTVHFN 59
                4.344899*************9999998888899998 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   4.8e-05     0.048       2      20 ..      29      47 ..      28      60 .. 0.88
   2 ?    3.0   0.0       0.1     1e+02      67     106 ..     149     190 ..      92     203 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.8e-05
      AAA_33  2 vllvGlpGsGKstlaerll 20
                v lvG++G+GKstl++r++
  CTQ28604.1 29 VHLVGPNGAGKSTLLTRMA 47
                789*************987 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.1
      AAA_33  67 lsagrnvildatnls..rrerarflklarrlgvpvrivvvet 106
                  sag+ ++ld ++ s   +++a++++l+++l+++  +vv+++
  CTQ28604.1 149 NSAGQLLLLDEPMNSldVAQQAALDRLLHELSAAGIAVVMSS 190
                 478888999999665448999********9999888887765 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   9.7e-06    0.0096      21      88 ..     115     176 ..      90     178 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9.7e-06
     SbcCD_C  21 gkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                 g + +l r +++lSGGe q     + +aa+  +++    +++a +l++LDE  ++lD   +a+l +ll
  CTQ28604.1 115 GLDNKLGRPVNQLSGGEWQR----VRLAAVILQIDPL--SNSAGQLLLLDEPMNSLDVAQQAALDRLL 176
                 566778999*********54....5566777777775..48999*************99998887766 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.1e-05     0.041      98     121 ..      25      48 ..       5      56 .. 0.81
   2 ?    0.5   0.0      0.49   4.9e+02      56      85 ..     164     192 ..     159     208 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.1e-05
                  TTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallp 121
                  +++++ lvG+ G+GKStL+ ++++
   CTQ28604.1  25 AGEIVHLVGPNGAGKSTLLTRMAG 48 
                  34999**************98876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.49
                  GGG--HHHHHHHHHHHHHHTTSEEEE--TT CS
  RsgA_GTPase  56 iDlleeeeeleelkeelealgyevllvsak 85 
                  +D+++++  l++l +el+a+g++v++ s +
   CTQ28604.1 164 LDVAQQAA-LDRLLHELSAAGIAVVMSSHD 192
                  55555555.666666666666666666555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.7   5.6e-05     0.056      31      54 ..      24      47 ..      21     192 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.6e-05
      AAA_25 31 pagelallaGapgtGKttlaldla 54
                +age++ l+G+ g+GK+tl++ +a
  CTQ28604.1 24 RAGEIVHLVGPNGAGKSTLLTRMA 47
                5899****************9987 PP

>> CCDC32  Coiled-coil domain containing 32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0         1     1e+03     128     147 ..      15      34 ..       3      37 .. 0.85
   2 !   13.9   0.0   4.1e-05     0.041      87     150 ..     161     226 ..     148     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1
      CCDC32 128 wLlPekvAisaeEleyllkp 147
                 +L P   A  a+E+++l+ p
  CTQ28604.1  15 RLAPFSAAFRAGEIVHLVGP 34 
                 5899999**********976 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 4.1e-05
      CCDC32  87 LesLsqkkkecwdrlLad..eveselfeegldldesalerl.kRwLlPekvAisaeEleyllkpdal 150
                 ++sL+ +++   drlL++  +    + ++ +dl+ ++l +  + wLl +  Ai  +E+ ++l++++l
  CTQ28604.1 161 MNSLDVAQQAALDRLLHElsAAGIAVVMSSHDLN-HTLRHAgQSWLLCQGEAIACGETAEVLNEENL 226
                 689***************6555666667776665.666665278******************99876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   0.00014      0.14       7      44 ..      28      57 ..      24     199 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
      AAA_22  7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvf 44
                i+ ++G+ G+GK+tll r++   d        +p++v+
  CTQ28604.1 28 IVHLVGPNGAGKSTLLTRMAGLSD--------GPGTVH 57
                6779**************988765........444444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.2e-05     0.052      23      36 ..      30      43 ..      22      47 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.2e-05
      AAA_23 23 lItGpNGaGKTTil 36
                 ++GpNGaGK+T+l
  CTQ28604.1 30 HLVGPNGAGKSTLL 43
                589**********8 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00062      0.62      16      39 ..      25      47 ..      13      59 .. 0.81
   2 ?    1.5   0.0      0.22   2.1e+02      87     121 ..     150     188 ..     101     224 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00062
      AAA_30 16 sgdrvavltGpAGtGKttalkalr 39
                 g  ++ l+Gp G+GK+t+l+ ++
  CTQ28604.1 25 AG-EIVHLVGPNGAGKSTLLTRMA 47
                44.38999************9876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.22
      AAA_30  87 epgtllivDE....agmvdtkqlaallkaaekagakvil 121
                 ++g+ll+ DE      ++ ++ l++ll ++++ag+ v++
  CTQ28604.1 150 SAGQLLLLDEpmnsLDVAQQAALDRLLHELSAAGIAVVM 188
                 566888888842222234667778888888888877776 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.12      12      47 ..      14      47 ..       5      52 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
      AAA_27 12 GkftdrsldfsaeeadlhliyGpNEAGKstalrAis 47
                G+++  s +f+ + + +hl +GpN AGKst+l+ + 
  CTQ28604.1 14 GRLAPFSAAFR-AGEIVHL-VGPNGAGKSTLLTRMA 47
                55555666676.4666776.5**********98765 PP

>> EccE  Putative type VII ESX secretion system translocon, EccE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       8.7   8.7e+03      30      56 ..      81     107 ..      71     111 .. 0.68
   2 ?   11.4   0.7   0.00032      0.32       7      71 ..     138     202 ..     133     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8.7
        EccE  30 egaaraaaaaarRlakaLreqGirarv 56 
                 ++    a+ + + la ++++qG +ar+
  CTQ28604.1  81 HQTPPFAMPVWHYLALHMQQQGDSARL 107
                 555556666667777888888877776 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00032
        EccE   7 tWlalrldpeenvaa.lsaRgggtegaaraaaaaarRlakaLreqGirarvleaeeldaalaalav 71 
                   ++l +dp +n a+ l   +  + ++  a +aa +Rl+++L  +Gi+ +v+++ +l++ l+++++
  CTQ28604.1 138 AAVILQIDPLSNSAGqLLLLDEPMNSLDVAQQAALDRLLHELSAAGIA-VVMSSHDLNHTLRHAGQ 202
                 5567777777776664555677889999999****************5.66778889988888765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0013       1.3      25      41 ..      28      44 ..      18      51 .. 0.87
   2 ?    1.1   0.0      0.26   2.6e+02     290     365 ..     120     192 ..      94     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0013
      AAA_15 25 ltvliGkNnsGKSsile 41
                +  l+G+N++GKS++l 
  CTQ28604.1 28 IVHLVGPNGAGKSTLLT 44
                6779**********995 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.26
      AAA_15 290 eelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                    p+n+ + G  + + l+  il +     +++   +ll++EP ++L   +q  l +ll el+  +   v++++H 
  CTQ28604.1 120 LGRPVNQLSGGEWQRVRLAAVILQIDPL--SNSAGQLLLLDEPMNSLDVAQQAALDRLLHELSAAGI-AVVMSSHD 192
                 5567788888888888888888888888..888899**************************99998.89999995 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00032      0.31       2      44 ..      29      76 ..      28     120 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00032
      AAA_28  2 ivitGgestGKTtlleaLa..ar..gypvv.pEaareileeklakged 44
                + ++G+ ++GK+tll ++a  ++  g++++  +   e    +la++++
  CTQ28604.1 29 VHLVGPNGAGKSTLLTRMAglSDgpGTVHFnGRLLDEWPARELARRRG 76
                5689**************955334555555555555555555555554 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00035      0.35       3      24 ..      28      49 ..      26      55 .. 0.88
   2 ?   -3.6   0.0         7     7e+03      37      61 ..     164     188 ..     161     198 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00035
                EEEEEESTTSSHHHHHHHHHHH CS
       SRP54  3 villvGlqGaGKTttlaKLaal 24
                ++ lvG++GaGK t l+++a l
  CTQ28604.1 28 IVHLVGPNGAGKSTLLTRMAGL 49
                6789***************965 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 7
                 ESTSSTTHHHHHHHHHHHTTEEEEE CS
       SRP54  37 aDtfRaaAveQLktlaeklgvpvik 61 
                 +D+   aA++ L +  + +g+ v+ 
  CTQ28604.1 164 LDVAQQAALDRLLHELSAAGIAVVM 188
                 6667777777776666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 1802.83
//
Query:       CTQ28605.1  [L=183]
Description: putative glutathione peroxidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-44  149.9   0.1      2e-44  149.6   0.1    1.1  1  GSHPx     Glutathione peroxidase
      2e-06   27.6   0.0    0.00021   21.0   0.0    2.1  2  Redoxin   Redoxin
    0.00014   21.7   0.1     0.0004   20.3   0.0    1.8  2  AhpC-TSA  AhpC/TSA family


Domain annotation for each model (and alignments):
>> GSHPx  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.6   0.1   3.4e-48     2e-44       2     107 ..       6     111 ..       5     112 .. 0.98

  Alignments for each domain:
  == domain 1  score: 149.6 bits;  conditional E-value: 3.4e-48
                 GGBEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGGGTEEEEEEEE-TTTT---S-GGGHHHTSSHTTT-SSEEB--BBSSSTTB CS
       GSHPx   2 yelsakdidgekvkleklrgkvvlivnvaskCglteqykeleelqkrykdkglvilgfPCnqfgkqepgsdeeikkfrqgkyevtfellekievnGeke 100
                  ++++++idgek++l +++gkv+livnvaskCglt+qy++le+lqk+++ +g+ +lgfPCnqf  qepgs+eeik+f++++y+vtf+l++ki+vnGe++
  CTQ28605.1   6 LNTEVTTIDGEKTTLASFAGKVLLIVNVASKCGLTPQYEQLEDLQKQFAAEGFSVLGFPCNQFLGQEPGSEEEIKTFCSTTYGVTFPLFSKIDVNGEHR 104
                 578999********************************************************************************************* PP

                 -HHHHHH CS
       GSHPx 101 dplykfl 107
                  ply+ l
  CTQ28605.1 105 APLYQKL 111
                 ****987 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   3.5e-08   0.00021      16      68 ..      13      63 ..       5      99 .. 0.79
   2 !    4.6   0.0    0.0041        25     119     146 ..     150     176 ..     142     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.5e-08
                TCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEE CS
     Redoxin 16 tdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvav 68
                 dg++++l++f+gk+++++ v++  c+  +++  +le+l+++++++g++v++ 
  CTQ28605.1 13 IDGEKTTLASFAGKVLLIVNVAS-KCGL-TPQYEQLEDLQKQFAAEGFSVLGF 63
                599********************.**98.78889****************987 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0041
                 EEEEETTEEEEEEESSSCHTSTTSHHHH CS
     Redoxin 119 avidedgkvvylevepepeteesnaeav 146
                 +++d++g+v++++ ++++++ ++++ a+
  CTQ28605.1 150 FLVDRQGNVIQRFSPDMTPD-DPQLVAA 176
                 89***************965.7776655 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   6.7e-08    0.0004       6      88 ..       6      95 ..       1     103 [. 0.79
   2 ?   -2.3   0.0      0.67     4e+03     113     122 ..     150     159 ..     148     161 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 6.7e-08
                ---EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCH........HHHHHHHH.-H.SSEEEE CS
    AhpC-TSA  6 pdfelknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspe........shkkfiek.eslnfplls 88
                 + e+++ dge+ +l+ ++gk+++++ +++  c  +  + ++l++l ++f+++g+ v+g  +++          ++k f+ + ++++fpl+s
  CTQ28605.1  6 LNTEVTTIDGEKTTLASFAGKVLLIVNVAS-KCGLT-PQYEQLEDLQKQFAAEGFSVLGFPCNQFLgqepgseeEIKTFCSTtYGVTFPLFS 95
                57789999************9999999999.89876.7899******************988765445555555777776541457777776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.67
                 EEE-TTSBEE CS
    AhpC-TSA 113 fvidkegkir 122
                 f++d++g++ 
  CTQ28605.1 150 FLVDRQGNVI 159
                 9999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1447.01
//
Query:       CTQ28606.1  [L=266]
Description: DL-methionine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-84  281.7   1.1    3.8e-84  281.5   1.1    1.0  1  Lipoprotein_9   NLPA lipoprotein
      0.006   16.5   0.1      0.013   15.5   0.1    1.5  1  DUF4223         Protein of unknown function (DUF4223)
     0.0092   15.6   0.1      0.047   13.3   0.0    1.9  2  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
  ------ inclusion threshold ------
       0.52   10.9   6.2        1.9    9.1   6.2    2.0  1  LPAM_1          Prokaryotic membrane lipoprotein lipid attach


Domain annotation for each model (and alignments):
>> Lipoprotein_9  NLPA lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.5   1.1   8.4e-88   3.8e-84       1     236 []      28     266 .]      28     266 .] 0.99

  Alignments for each domain:
  == domain 1  score: 281.5 bits;  conditional E-value: 8.4e-88
                    EEEEEETTTHHHHHHHHHHHHHTTT.EEEEEEEESSSSHHHHHHHTTSSSEEEEEEHHHHHHHHHHTT-.EEEEEEEEE---EEE-SS-SSGGG-- CS
  Lipoprotein_9   1 lkvGvlsgpeaevlekvkkllkkkg.ldleiveFtdyvqpNkaladgeiDanaFQhlpyLeqfnkekgkklvavgnthvepiglYSkkykslselk 95 
                    +kv++ +gp++ ++++v++++k+k+ ld+e+v+F+dyv pN+al+++++DanaFQ+lpyLe++ ke+g+k++ vg+t+v pi++YS+++k++sel+
     CTQ28606.1  28 VKVAINTGPDEAIWKVVEQVAKDKYhLDVEVVSFNDYVLPNEALNNKDVDANAFQTLPYLEAQSKERGYKFAVVGKTFVFPIAAYSHRIKNISELP 123
                    79********************************************************************************************** PP

                    TT-EEEEESSHHHHHHHHHHHHHTTSSEE-TT-CTT--GGGEEE-TT--EEEEE-GGGHHHHGGT..SSEEEE-HHHHHHTT--HHHH-SEE-SST CS
  Lipoprotein_9  96 eGatiavpndpsnegRaLllLekagLikLkdgkgllatvkdIteNpknLkikeleaaqlpraldd..vdaavintnyalkagldpkkdalfeedkd 189
                    eGat++++n+++  gR LllL+++gL+kLk g g+l t+ dI +Npk+Lki e+++ ql r+ldd  v +++intn+  +agl+  +d+lf e  d
     CTQ28606.1 124 EGATVTISNETTTLGRSLLLLQAQGLLKLKPGVGYLPTTLDIIDNPKQLKIVEVDTPQLTRTLDDpnVSLSIINTNFSAQAGLSAARDGLFMEGPD 219
                    *****************************************************************99**************************99* PP

                    SSG-EEEEEETTCTTSHHHHHHHHHHTSHHHHHHHHHHTTTSSEE-S CS
  Lipoprotein_9 190 spyvniivvrekdkddeavkklveayqseevkkaiekkykgavvpaw 236
                    spyvn iv+re++kd++++++l +a+q+ ev++ +++ ykg+++++w
     CTQ28606.1 220 SPYVNAIVAREDNKDSKKIQELKAAFQTSEVAEKAKEVYKGDAIKGW 266
                    ********************************************998 PP

>> DUF4223  Protein of unknown function (DUF4223)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   2.8e-06     0.013       1      29 [.       1      29 [.       1      31 [. 0.91

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.8e-06
     DUF4223  1 mkklvkialvaavvstltaCtGsvenkek 29
                mkkl+ +al+a+ v++l+aC  +  nk k
  CTQ28606.1  1 MKKLFSLALIATSVALLSACSPDEDNKVK 29
                9*******************988887765 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.1e-05     0.047      25     119 ..      50     139 ..      38     183 .. 0.84
   2 ?    0.2   0.0       0.1   4.6e+02      82     105 ..     219     243 ..     189     265 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
                     HHHSSEEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS.-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHH.GG-EEEE--TT-TT CS
  Phosphonate-bd  25 eelGvevelvvatdyaavvealragqvDiaflgplayvqardqa.gveplatrvrsdGsasyrsviivradsdiqsledL.kgktiafvspsSts 117
                     ++   +ve+v ++dy    eal +  vD   +++l+y++a+ +  g++  ++ +        + + i++ ++ i+++++L +g+t+++   + t 
      CTQ28606.1  50 DKYHLDVEVVSFNDYVLPNEALNNKDVDANAFQTLPYLEAQSKErGYKFAVVGKT-------FVFPIAAYSHRIKNISELpEGATVTISNETTTL 137
                     555678***********************************99747777776665.......777888888899999999999999999999988 PP

                     TT CS
  Phosphonate-bd 118 Gy 119
                     G 
      CTQ28606.1 138 GR 139
                     85 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.1
                     -SEEEEEEEEETTSS.--SHHHHGG CS
  Phosphonate-bd  82 sasyrsviivradsd.iqsledLkg 105
                     ++ y  +i++r+d++  +++++Lk 
      CTQ28606.1 219 DSPYVNAIVAREDNKdSKKIQELKA 243
                     5677777777777654666666653 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   6.2   0.00042       1.9       1      18 []       1      21 [.       1      21 [. 0.91

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00042
      LPAM_1  1 MKKi...llalgalllLsGCs 18
                MKK+    l+++ ++lLs+Cs
  CTQ28606.1  1 MKKLfslALIATSVALLSACS 21
                9***888899999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2210.50
//
Query:       CTQ28607.1  [L=328]
Description: vitamin B12 transporter subunit: membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-87  293.8  36.5    1.5e-87  293.5  36.5    1.0  1  FecCD     FecCD transport family
    7.5e-06   25.6  15.1    1.4e-05   24.7  15.1    1.4  1  ABC-3     ABC 3 transport family
  ------ inclusion threshold ------
      0.057   12.6   0.0      0.079   12.2   0.0    1.1  1  NUP       Purine nucleoside permease (NUP)


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.5  36.5   2.5e-91   1.5e-87       1     312 []      22     323 ..      22     323 .. 0.97

  Alignments for each domain:
  == domain 1  score: 293.5 bits;  conditional E-value: 2.5e-91
       FecCD   1 llllllllslllgavkispsevfeallgkadsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgsls 99 
                 lll++ll+sl++g+ +i+p e ++a       + + +++++rlpr+la+llvGaaLa++Ga++Q++++NpLa+P++lG+s+ga++g+++a+ll+ g l+
  CTQ28607.1  22 LLLVTLLISLCAGEQWIPPGEWLSA-------KGQLFIWQIRLPRTLAVLLVGAALALSGAIMQALFENPLAEPGLLGVSNGAGVGLIAAVLLGKGVLP 113
                 6899*******************98.......45789************************************************************** PP

       FecCD 100 lfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllar 198
                  +al l+a++gall+++++l +a  r++ s+ +l+LaG+a+++++sal+++ ++++++ +l+++++w++G ++g++w+++ +l+++ll +l +++l ++
  CTQ28607.1 114 GWALGLCAIFGALLITFILLRFA--RRHLSTSRLLLAGVALGIICSALMTWAVYFSTSFDLRQLMYWMMGGFGGVDWQQL-WLMIALLPVLCWVCLQSQ 209
                 ***********************..*******************************************************.566778899999****** PP

       FecCD 199 kldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvg.adhrkllplsallGallllladllarlllsptelpvgi 296
                 +l+llalg+  A++lG++   +r ll++++ ++++v+val+G igF+GL++Phi+r l+g +dhr llp+++l+Ga  ll ad++arl+ls +elp+g+
  CTQ28607.1 210 PLNLLALGEVSARQLGLPLWLWRKLLVVATGWMVGVSVALAGAIGFIGLVIPHILR-LCGlSDHRVLLPACMLAGASALLGADIIARLALSAAELPIGV 307
                 ********************************************************.6666************************************** PP

       FecCD 297 vtaliGapffiylllr 312
                 vta++Gap+fi+lllr
  CTQ28607.1 308 VTATLGAPVFIWLLLR 323
                 **************97 PP

>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7  15.1   2.3e-09   1.4e-05      44     241 ..     109     302 ..      98     321 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.3e-09
       ABC-3  44 pGvalayllgvnlllgailvglia.avalellkrktklkedtaigivlsvflalglvlvslikkskvdldsyLfGniltisqedliliaiieavvllll 141
                  Gv  +++lg+  ++ga+l+++i+  +a   l++   l   +a+gi++s+ +  ++ + +  +    +l+ +++G   +++ ++l+l++++ + vl+ +
  CTQ28607.1 109 KGVLPGWALGLCAIFGALLITFILlRFARRHLSTSRLLLAGVALGIICSALMTWAVYFSTSFD--LRQLMYWMMGGFGGVDWQQLWLMIAL-LPVLCWV 204
                 48888999999999999999976516677788888888999**************99998888..789******************99776.5578999 PP

       ABC-3 142 llfwkelllitfdeelAkveglsvkllkllllalialavvvalqavGviLvialliiPaatArrltrslesllivAillglvsvvaGlllSyyldlatG 240
                 +l+ ++l l+ + e  A+  gl++ l + ll++ ++  v v++ ++G+i  i l +iP ++ r+ + s +++l+ A +l+  s+++G+ + + l l++ 
  CTQ28607.1 205 CLQSQPLNLLALGEVSARQLGLPLWLWRKLLVVATGWMVGVSVALAGAIGFIGL-VIPHIL-RLCGLSDHRVLLPACMLAGASALLGADIIARLALSAA 301
                 9************************************************99996.679776.6777788899999999999999999988877776665 PP

       ABC-3 241 a 241
                  
  CTQ28607.1 302 E 302
                 4 PP

>> NUP  Purine nucleoside permease (NUP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.3e-05     0.079      53      89 ..     151     188 ..     129     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
         NUP  53 GegeinaaasimaLvlsprFdLtk.tYfliaGiaGvnP 89 
                   g i +a  + a+ +s+ FdL++  Y++++G +Gv+ 
  CTQ28607.1 151 ALGIICSALMTWAVYFSTSFDLRQlMYWMMGGFGGVDW 188
                 567788999999**********9957**********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       926  (0.0516482); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2596.55
//
Query:       CTQ28608.1  [L=477]
Description: putative H+/gluconate symporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.64   10.0   0.0       0.64   10.0   0.0    3.8  4  DUF2116   Uncharacterized protein containing a Zn-ribbon (DUF
       0.83    9.3   0.0       0.83    9.3   0.0    2.5  3  UL45      UL45 protein, carbohydrate-binding C-type lectin-li
        3.1    8.1   6.5        2.8    8.3   0.1    3.7  3  DUF1294   Protein of unknown function (DUF1294)


Domain annotation for each model (and alignments):
>> DUF2116  Uncharacterized protein containing a Zn-ribbon (DUF2116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.06   3.6e+02      33      56 ..      14      37 ..      11      40 .. 0.70
   2 ?   -4.6   1.7         3   1.8e+04      43      51 ..      69      77 ..      58      82 .. 0.48
   3 ?   10.0   0.0   0.00011      0.64      22      54 ..     259     291 ..     258     296 .. 0.89
   4 ?   -1.9   1.5      0.58   3.5e+03      45      56 ..     301     312 ..     297     315 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.06
     DUF2116 33 kkvarsqqilfgililllavvlvl 56
                + + r   i+ + l+l++++ l+ 
  CTQ28608.1 14 RNITRKNVIIGLLLLLFVLIALWC 37
                556677777777777888887775 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 3
     DUF2116 43 fgilillla 51
                ++i  +++a
  CTQ28608.1 69 AVISSIIIA 77
                222222222 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00011
     DUF2116  22 ekCqeeyekkrkkvarsqqilfgililllavvl 54 
                 ek qe ++ ++++ +++  + f++ i+++a+v 
  CTQ28608.1 259 EKPQEDLSAAQQRRRKLSALAFAATIIVMAIVG 291
                 677999************************985 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.58
     DUF2116  45 ililllavvlvl 56 
                 ++i++l+v l++
  CTQ28608.1 301 AIIVMLLVALMT 312
                 566666666665 PP

>> UL45  UL45 protein, carbohydrate-binding C-type lectin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.3       1.1   6.7e+03      56      69 ..      21      34 ..      17      36 .. 0.86
   2 ?   -2.3   2.0      0.49   2.9e+03      48      78 ..     152     185 ..     129     192 .. 0.70
   3 ?    9.3   0.0   0.00014      0.83      12      75 ..     246     310 ..     240     335 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.1
        UL45 56 ialGvlltvfviva 69
                + +G+ll  fv++a
  CTQ28608.1 21 VIIGLLLLLFVLIA 34
                67999999999986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.49
        UL45  48 alllilggialGvlltvfvivatlv...favpls 78 
                  ++ +lg +a G  + v+vi+ + +   +++p  
  CTQ28608.1 152 LICGSLGTMAGGNAIIVAVIIPVAAavrLTPPTV 185
                 3788889999998888888875554557888865 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00014
        UL45  12 pvkaelrfevrailedepsvlsstsssrtkrkspaaalllilggialGvll...tvfvivatlvfav 75 
                  ++++lr +v +  ++++ ++ +++ +r k+ s  a    i+ +  +Gv++   + f+i+  l+ a+
  CTQ28608.1 246 MTEGKLRYDVDLAEKPQEDLSAAQQ-RRRKL-SALAFAATIIVMAIVGVVIkagFSFAIIVMLLVAL 310
                 4688999999988888887766666.45555.4555558999********94444466655444443 PP

>> DUF1294  Protein of unknown function (DUF1294)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.18   1.1e+03      30      43 ..     150     163 ..     137     166 .. 0.78
   2 ?   -0.3   0.3      0.21   1.3e+03      27      40 ..     305     318 ..     303     325 .. 0.83
   3 ?    8.3   0.1   0.00046       2.8      28      50 ..     381     403 ..     379     404 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.18
     DUF1294  30 lallgGslGallgm 43 
                   l++GslG+++g 
  CTQ28608.1 150 SILICGSLGTMAGG 163
                 5689******9985 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.21
     DUF1294  27 LlllallgGslGal 40 
                 +ll+al+ G +G+l
  CTQ28608.1 305 MLLVALMTGLVGGL 318
                 689*********97 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00046
     DUF1294  28 lllallgGslGallgmrlfrHKt 50 
                 +++ ++g ++Ga +++ +f HK+
  CTQ28608.1 381 FAFNIIGHVPGAAVAQMTFTHKI 403
                 7889999***************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1077  (0.0600703); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3420.09
//
Query:       CTQ28609.1  [L=304]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-23   81.0   0.2      1e-22   80.5   0.2    1.2  1  LysR_substrate  LysR substrate binding domain
    2.2e-18   66.0   0.2    4.5e-18   65.0   0.2    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.2   1.2e-26     1e-22       3     208 ..      88     281 ..      86     282 .. 0.89

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 1.2e-26
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvs 97 
                      +r ++++g+ p+l+ +l+p+l+ +f +++ ++ + l+++++e+l+++l+ +e+Dla++++p ++ ++  + +ae plv +  +++   r+  v+
      CTQ28609.1  88 DPRAKITLGCLPSLGLSLVPELVTDFYQQNSNLVMTLTTEHTETLVKKLDLREIDLALTLQPVQQGEILTTLIAEVPLVYI-DRHY---RQGAVE 178
                     68999***********************************************************************99988.5555...6789** PP

                     GGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCC CS
  LysR_substrate  98 ledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgre 192
                     ++++ ++++i      g + l  +   ++ ++ ++ l v ++ ++ ++v+ G+G ++   + +++ la  +++  p+ + p+  +l+l++r++  
      CTQ28609.1 179 IDQIDQQRWIS----PGPHSLSAAIATRRDFSTTR-LNVQTYYMATEFVKRGMGCSITDIFSAQHNLAP-EMI-HPITP-PMAINLCLLRRADVS 265
                     ***********....44444444444577776666.***************************887777.777.79999.9************** PP

                     CHHHHHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidflreal 208
                     lsp ++ f+dfl ++l
      CTQ28609.1 266 LSPMAQKFVDFLCQRL 281
                     ***********97765 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.2     5e-22   4.5e-18       1      59 [.       3      61 ..       3      62 .. 0.96

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 5e-22
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                lr+l++f av+ +gs++rAAe+L++sqpa+s+++k+ E +lg +Lf+R  ++l +T ++
  CTQ28609.1  3 LRHLEIFYAVMTCGSLSRAAEALNISQPAASKALKSAEMRLGFTLFQRVRGKLLPTSEA 61
                79**********************************************9999***9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2415.01
//
Query:       CTQ28610.1  [L=417]
Description: D-amino acid dehydrogenase 2 small subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-57  196.2   0.1    1.3e-57  196.0   0.1    1.0  1  DAO              FAD dependent oxidoreductase
    2.6e-08   34.0   0.4    1.3e-07   31.8   0.1    2.1  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    4.3e-08   32.3   0.0    0.00019   20.2   0.1    2.1  2  HI0933_like      HI0933-like protein
    6.1e-06   25.6   0.9    1.1e-05   24.8   0.9    1.6  1  FAD_binding_2    FAD binding domain
      2e-05   24.0   0.0    5.1e-05   22.7   0.0    1.6  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
    7.7e-05   23.2   0.1    0.00018   22.0   0.1    1.6  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      0.001   18.4   0.0      0.033   13.4   0.1    2.1  2  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
     0.0023   17.2   0.0     0.0033   16.7   0.0    1.3  1  FAD_binding_3    FAD binding domain
     0.0027   17.7   0.1        0.2   11.6   0.1    2.4  2  NAD_binding_9    FAD-NAD(P)-binding
     0.0039   16.5   0.1     0.0066   15.8   0.1    1.4  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
     0.0046   16.2   0.1     0.0069   15.7   0.1    1.2  1  Thi4             Thi4 family
     0.0065   15.6   0.1      0.012   14.7   0.1    1.4  1  GIDA             Glucose inhibited division protein A
     0.0097   15.2   1.0       0.15   11.3   0.1    2.4  2  Amino_oxidase    Flavin containing amine oxidoreductase
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.031   13.6   0.0    1.7  2  FAD_oxidored     FAD dependent oxidoreductase
      0.013   15.1   0.2      0.031   13.9   0.2    1.6  1  ApbA             Ketopantoate reductase PanE/ApbA
      0.078   13.4   0.0       0.12   12.8   0.0    1.4  1  NAD_binding_7    Putative NAD(P)-binding
       0.11   12.9   0.0       0.25   11.8   0.0    1.5  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
       0.12   11.9   0.0        0.2   11.2   0.0    1.2  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
       0.13   12.1   0.1       0.24   11.3   0.1    1.4  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
       0.77   10.4   2.9       0.58   10.8   0.1    2.2  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.0   0.1   1.4e-60   1.3e-57       1     348 [.       4     394 ..       4     398 .. 0.84

  Alignments for each domain:
  == domain 1  score: 196.0 bits;  conditional E-value: 1.4e-60
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH.......................................... CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas.......................................... 55 
                 ++viiGGG++Gl+tA+eL +rg  V lle++ ++gs++S +n+g+l+  +  +p a                                           
  CTQ28610.1   4 RIVIIGGGVVGLATAWELIKRGhqVQLLERNAEPGSATSFANGGQLSYRYV-APLADsgvplqgmkwmgkadsplnmrlrmsiqqwrwllqflracnnq 101
                 59*******************99***********************99663.44344679999************************************ PP

                 .......HHHHHHHHHHHHHHHHHHHHSS.TTSEEEEEEEEEESSHHHHHHHHHHHHHHHHTTTTE.EEEEHHHHHHHSTTST....TTSEEEEETTEE CS
         DAO  56 .......elarlslealeelreleeelgi.didyrrtGllslaadeeelealdkllallleaglda.elldaeevrelepalp....gllgalfypdtg 141
                         ++rlsl +++ ++++ +e ++ d+ +rr+G+l++ +    + ++ +++a++   ++++ + l+ae +++lepal+     l+g++++p++ 
  CTQ28610.1 102 tnkmngdHILRLSLLSRQVMQAWRDEDNLaDFHWRRSGKLIIHRR---EYDF-NKAAKGI--DPQYqQALNAEACLQLEPALKhispSLQGGIYSPGDE 194
                 *******66677777777774444443442799*********764...3335.3344332..2233358***99******9334555999********* PP

                 EEEHHHHHHHHHHHHHHTT.-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGGHH.HHHTT.CTTTSEEEEEEEEEEEEEECCTHSTG CS
         DAO 142 qvdpakltaalaraaealG.veilegtevtgleeedgkvwgverttp.gendaadavVnaaGawsd.llgll.keldlpispvrgqvlvlkplseklvs 236
                 ++d+++++ al++++ a     +l+++ev++l++ +g+++ +  +t+ g+ +  d  V+aaG +s+ llg l    ++p+ +++g++l+l p +e    
  CTQ28610.1 195 TADCHQFCLALLDKLNASSdFSLLTQCEVRRLNKLGGRISSL--ETSqGTLTG-DEYVVAAGNGSGsLLGHLgV--RVPLCALKGYSLTL-PYPE---- 283
                 **************755544************8888999999..677698755.99**********77744434..56************.8888.... PP

                 SGCSEEEEEEEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGGGCGEE..EEEEEEEE.ETTSSEEEEEEETEEEEEEEE CS
         DAO 237 paailpvpetdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedidellealrklfPqlgdvl..rkwaGlrp.lpdglpligetpgvkglylat 332
                 +a i+p+  +++d ++ +v++r+++++++ +    + g+d  e  e +i++l + +++ fP+l+ +   + w+G+rp +p g p++g++ g+++l+++ 
  CTQ28610.1 284 KAGIAPDI-SVTDYGHKIVYARLGQQLRIAAMV--DIGYDGDELRESRIQALKNIVARSFPELEGLDeaEVWTGMRPsTPAGPPMLGRA-GYPNLWMNL 378
                 35888998.999999********99****9998..7777778********************96655225*******779********6.6******** PP

                 ECTTTHHHHHHHHHHH CS
         DAO 333 GhsghGltlapatGkl 348
                 G ++ G+tla++++ +
  CTQ28610.1 379 GQGSLGFTLAAGSAVV 394
                 ************9966 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   1.4e-10   1.3e-07       1      43 [.       7      49 ..       7      60 .. 0.87
   2 ?   -0.7   0.0         2   1.8e+03      29      41 ..     227     240 ..     225     253 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.4e-10
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETT.C CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpg.v 43
                   I+G+G+ Gl++A++L k+g++v+lle++  + G a+s+ ++g  
     CTQ28610.1  7 IIGGGVVGLATAWELIKRGHQVQLLERNAEP-GSATSFANGGqL 49
                   9******************************.689998887743 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2
                    SSSSGGG-EECE.T CS
  NAD_binding_8  29 drlGGraasyev.p 41 
                    ++lGGr++s e  +
     CTQ28610.1 227 NKLGGRISSLETsQ 240
                    789*****988743 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   2.2e-07   0.00019       2      46 ..       4      48 ..       3      51 .. 0.91
   2 !    9.8   0.0   0.00031      0.28     115     196 ..     205     286 ..     194     295 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.2e-07
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKilisGgGr 46
                 ++++iGgG  Gl +A ++ krg++V lle++ ++g+    + gG+
   CTQ28610.1  4 RIVIIGGGVVGLATAWELIKRGHQVQLLERNAEPGSATSFANGGQ 48
                 69*********************************9888877776 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00031
                  HHHHHHH.HT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-GGGT--SHHHHHHHHTT--EEEEEEES-- CS
  HI0933_like 115 llkelke.agvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiPklGstgkgyklaeqfghtivplrpalvp 196
                  ll +l++ ++ +l +++ev++++k  +++ +++t s+++l+ d+ v+A G  S   lG  g  ++l +  g +++ ++p + +
   CTQ28610.1 205 LLDKLNAsSDFSLLTQCEVRRLNKLGGRISSLET-SQGTLTGDEYVVAAGNGSGSLLGHLGVRVPLCALKGYSLTLPYPEKAG 286
                  55555542688999**************99****.9***********************999999999999999988887665 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.9   1.2e-08   1.1e-05       2      44 ..       5      47 ..       4     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.2e-08
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S- CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGg 44
                   +++iG+G+ GLa A e+ ++G++v ++e   e g+at ++ Gg
     CTQ28610.1  5 IVIIGGGVVGLATAWELIKRGHQVQLLERNAEPGSATSFANGG 47
                   79**************************************998 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   5.6e-08   5.1e-05     142     178 ..       2      38 ..       1      69 [. 0.77
   2 ?   -2.3   0.0       2.2     2e+03      85     108 ..     233     253 ..     188     268 .. 0.57

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 5.6e-08
                  TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 142 pkrivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  +kriv++GgG++G+ +A +l k g++v l+e++ ++ 
   CTQ28610.1   2 NKRIVIIGGGVVGLATAWELIKRGHQVQLLERNAEPG 38 
                  589*****************************99887 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.2
                  EEETEEECTCEEEEEESEEEE--- CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  85 vklekkkegdeekiaydklvlAtG 108
                  +   ++   ++ +++ d+ v+A G
   CTQ28610.1 233 ISSLET---SQGTLTGDEYVVAAG 253
                  222222...223455555555555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1     2e-07   0.00018       1      35 [.       4      38 ..       4      44 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2e-07
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35
                ++v++GgG++gl  A +l + g++V+++er+ ++ 
  CTQ28610.1  4 RIVIIGGGVVGLATAWELIKRGHQVQLLERNAEPG 38
                79****************************99886 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   3.7e-05     0.033     165     198 ..       3      36 ..       1      48 [. 0.71
   2 ?    2.7   0.0     0.068        61      89     134 ..     208     254 ..     195     260 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.7e-05
  Pyr_redox_3 165 qkvvViGgknSavDaAlelvrkgaeVtvvtrgse 198
                  +++v+iGg+  +  +A el+++g++V+++ r++e
   CTQ28610.1   3 KRIVIIGGGVVGLATAWELIKRGHQVQLLERNAE 36 
                  6677777777777777777777777777777664 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.068
  Pyr_redox_3  89 evaksfelpiklfeeVesvkk.edegfevetsketyeAkkviiAtGe 134
                  ++ +s + +  +++eV++++k  ++  ++ets++t++ ++ ++A+G 
   CTQ28610.1 208 KLNASSDFSLLTQCEVRRLNKlGGRISSLETSQGTLTGDEYVVAAGN 254
                  5666777788899********5567799*****************96 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.6e-06    0.0033       4      36 ..       5      37 ..       2     106 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.6e-06
                   EEEE--SHHHHHHHHHHHHTTHHEEEEESSSSS CS
  FAD_binding_3  4 VlIVGaGpaGlmlallLseaGvrvvlvekrstt 36
                   ++I+G+G +Gl +a +L ++G +v l+e+ ++ 
     CTQ28610.1  5 IVIIGGGVVGLATAWELIKRGHQVQLLERNAEP 37
                   78***************************9875 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00022       0.2       1      39 [.       6      40 ..       6      52 .. 0.82
   2 ?    3.7   0.0     0.064        57     102     155 ..     200     254 ..     198     255 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00022
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdp.sepgag 39
                   +i+G+G+ Gla++ +L++r      ++++l ++ +epg+ 
     CTQ28610.1  6 VIIGGGVVGLATAWELIKRG-----HQVQLLERnAEPGSA 40
                   7******************4.....888899985566754 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.064
  NAD_binding_9 102 dlfeellarlpegvtvevhra.evvdleeradgqavlladgaslaadaVvLAlGh 155
                    ++  +ll++l+++ +++++++ ev +l++ +++   l++++ +l+ d+ v+A G+
     CTQ28610.1 200 QFCLALLDKLNASSDFSLLTQcEVRRLNKLGGRISSLETSQGTLTGDEYVVAAGN 254
                    5667788899999999998777*******************************98 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   7.3e-06    0.0066      30      62 ..       4      36 ..       1      58 [. 0.90

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.3e-06
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrpa 62
                 ++++iGgGv+Gl+ ++   + g +V++l+ +++
   CTQ28610.1  4 RIVIIGGGVVGLATAWELIKRGHQVQLLERNAE 36
                 79**************************99976 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   7.6e-06    0.0069      18      63 ..       3      49 ..       1      57 [. 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.6e-06
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT..TTTSTT CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGGa..wlGGql 63
                  +vi+G+G  GL++a  l k+ + +v +ler+  pG  +    GGql
  CTQ28610.1  3 KRIVIIGGGVVGLATAWELIKR-GHQVQLLERNAEPGSATsfANGGQL 49
                569*******************.*************987522467776 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.3e-05     0.012       2      31 ..       5      34 ..       4      51 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.3e-05
                EEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLithk 31
                +++iGgG  G++ A+++ ++G++v L+  +
  CTQ28610.1  5 IVIIGGGVVGLATAWELIKRGHQVQLLERN 34
                89************************9554 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00017      0.15       3      27 ..      14      38 ..      13      49 .. 0.92
   2 ?    1.9   0.1      0.12   1.1e+02      97     260 ..      88     252 ..      78     260 .. 0.54

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
                   HHHHHHHHHHTTEEEEEEESSSSSB CS
  Amino_oxidase  3 GLaaArqLlsaGfdVtvlEardrvG 27
                   GLa+A++L  +G++V++lE +  +G
     CTQ28610.1 14 GLATAWELIKRGHQVQLLERNAEPG 38
                   9******************998887 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.12
                    HHHHHHHHHHH...CHHHHHHHHHHHHHHHHH..HHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTTTTCBHHH CS
  Amino_oxidase  97 wealleqgals...aellsleeklrlgleall..qktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdpselsakl 187
                    w+ ll++ + +   +++++    lrl+l +    q+++de +l+++++  s     +r++ d +     i+p++ ++l+ a + +  +p    +k+
     CTQ28610.1  88 WRWLLQFLRACnnqTNKMNGDHILRLSLLSRQvmQAWRDEDNLADFHWRRSGKLIIHRREYDFNKAAKGIDPQYQQALN-AEACLQLEP---ALKH 179
                    6666665555555566666666666666666677888888888888888777777777777766666666663333332.222223222...3333 PP

                    HTCCCCHHHHHTSCCCEE.TTHTHHHHHHHHHTTTTEEEETSEEEEEEEE.ETTCEEEEETTSTEEEESEEEE-S CS
  Amino_oxidase 188 alpllwelegfggslllp.rgGlsqlpealaeelrgldirlntrVkeikr.egdgvtvtledgevveaDaVvvTv 260
                      p+l+      g+ +        +l + l + +++ ++++ ++V+++++ +g   ++++++g+  ++D +vv++
     CTQ28610.1 180 ISPSLQGGIYSPGDETADcHQFCLALLDKLNA-SSDFSLLTQCEVRRLNKlGGRISSLETSQGTL-TGDEYVVAA 252
                    33333333333333222211112233333333.55666777777777777555556666555553.777777766 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.5e-05     0.031       2      39 ..       5      42 ..       4     111 .. 0.88
   2 ?   -1.4   0.0       1.3   1.2e+03      89     127 ..     202     240 ..     154     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.5e-05
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGllt 39
                  +v++GGg+ G+a A    ++G +v L+e++   G  ++
    CTQ28610.1  5 IVIIGGGVVGLATAWELIKRGHQVQLLERNAEPGSATS 42
                  89***************************998875554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.3
  FAD_oxidored  89 akavleemlaeagvtvllntrlvevekegkriesvtves 127
                     a+l+++ a ++  +l+++++++ +k g+ri s+++ +
    CTQ28610.1 202 CLALLDKLNASSDFSLLTQCEVRRLNKLGGRISSLETSQ 240
                   456677777889999999999999999999999999954 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   3.5e-05     0.031       1      31 [.       5      35 ..       5      51 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.5e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr 31
                i+i+G G +G   a++L k g++v l+ r++
  CTQ28610.1  5 IVIIGGGVVGLATAWELIKRGHQVQLLERNA 35
                89*************************9987 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00014      0.12       7      39 ..       2      34 ..       1     104 [. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00014
  NAD_binding_7  7 gkkvlvvGgGevAarkvrklleagakvtvvape 39
                   +k+++++GgG v++  +  l++ g +v+++  +
     CTQ28610.1  2 NKRIVIIGGGVVGLATAWELIKRGHQVQLLERN 34
                   79*************************998776 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00027      0.25       2      64 ..       9      92 ..       9     125 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00027
  Glyco_trans_4_4  2 GigryvaelaraLaarGheVtvltpapapg...............apeleedgvrvhrlpvprrps.plad.laal....ralr 64
                     G+g++  ++a +L +rGh+V++l +++ pg                 +l   gv++ ++++  + + pl++ l+++    r+l 
       CTQ28610.1  9 GGGVVGLATAWELIKRGHQVQLLERNAEPGsatsfanggqlsyryVAPLADSGVPLQGMKWMGKADsPLNMrLRMSiqqwRWLL 92
                     78899999999*************9888888888888888877665558889*****997666655155553222223322222 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00022       0.2       2      32 ..       4      34 ..       3      37 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
                    EEEEE--STTHHHHHHHHHHCTSEEEEE-S- CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvDid 32
                    +i++iG G vGl ta  l ++gh+v ++  +
      CTQ28610.1  4 RIVIIGGGVVGLATAWELIKRGHQVQLLERN 34
                    8************************877665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00027      0.24       2      33 ..       5      36 ..       4      44 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdisee 33
                + +iG G++G   a  ++++g++V+l+++++e
  CTQ28610.1  5 IVIIGGGVVGLATAWELIKRGHQVQLLERNAE 36
                789*************************9876 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00065      0.58       1      37 [.       4      36 ..       4      51 .. 0.85
   2 ?   -2.3   0.3       7.9   7.1e+03       5      18 ..     378     391 ..     378     393 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00065
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCC CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpe 37
                   +i iiG+G +g a a  l+++g   h++ +  +rn e
     CTQ28610.1  4 RIVIIGGGVVGLATAWELIKRG---HQVQLL-ERNAE 36
                   699*******************...999965.88776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.9
                    ETTSHHHHHHHHHH CS
  F420_oxidored   5 iGaGnmgealasgl 18 
                    +G G++g++la g 
     CTQ28610.1 378 LGQGSLGFTLAAGS 391
                    799*******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3185.21
//
Query:       CTQ28611.1  [L=122]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-23   82.5   0.0    2.8e-23   82.2   0.0    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.0   1.5e-27   2.8e-23       9     120 ..      15     120 ..       9     121 .. 0.94

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 1.5e-27
                    SS-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGG.HHHHHHHHHHHSSSSTS--EEEEEE CS
  Ribonuc_L-PSP   9 apYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladied.faevnevyaeafdelkeaParsave 103
                     + s  v  g+l+++sGq+p+ +      e+d+  qtr++le+++a+Laaag+++++++ ++++l++ie+ fa++nev+ ++++e +  Par+av+
     CTQ28611.1  15 PRLSASVAYGDLLFLSGQTPKSN------EDDIVLQTREVLEKIDALLAAAGSDKQHILSAQIWLKNIERdFAAFNEVWVQWMPEGY-SPARAAVQ 103
                    5678999*************985......99*************************************988***************6.9******* PP

                    -SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP 104 VaaLpkgakvEIeaiav 120
                    ++   ++++vEI ++av
     CTQ28611.1 104 AEMARPEILVEIMLTAV 120
                    *************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 977.33
//
Query:       CTQ28612.1  [L=99]
Description: integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-30  104.5   0.1    2.9e-30  104.3   0.1    1.0  1  Bac_DNA_binding  Bacterial DNA-binding protein
    1.2e-07   31.8   0.0    1.5e-07   31.5   0.0    1.1  1  HU-HIG           HU domain fused to wHTH, Ig, or Glycine-rich
    1.8e-06   27.7   0.0    2.7e-06   27.2   0.0    1.2  1  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
     0.0091   16.1   0.0      0.014   15.6   0.0    1.3  1  HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
  ------ inclusion threshold ------
       0.17   11.9   0.0        2.2    8.3   0.0    2.1  2  HU-DNA_bdg       DNA-binding domain


Domain annotation for each model (and alignments):
>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.1   8.2e-34   2.9e-30       1      89 [.       3      91 ..       3      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 8.2e-34
                     EEHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEEEEE--BS-B-TTT--B--B--EEEEEEEE-HHHHHHH CS
  Bac_DNA_binding  1 mtkkeLieeiaektgltkkdakrvveafldtikeaLkkgekvelsgFGtfkvkerkartgrnpkTgekvkiparkvvkFkpskelkeav 89
                     +tk+e+ e + +k gl+k+dak++ve f+++i  aL++ge+v+lsgFG+f ++++++r grnpkTge + i ar+vv+F+p+++lk +v
       CTQ28612.1  3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91
                     69************************************************************************************998 PP

>> HU-HIG  HU domain fused to wHTH, Ig, or Glycine-rich motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   4.2e-11   1.5e-07      42     122 ..      13      95 ..       2      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 4.2e-11
      HU-HIG  42 skrstlsrgdvkavldaledelkeaLadGerVeLgelGyFslslks.kgvedekevransikkkki.nfrpgkklkkelkkas 122
                  +  +ls+ d k  ++ + +e+++aL++Ge+V+L ++G+F l  k  ++  ++k+ +   i  +++  frpg+klk+++++as
  CTQ28612.1  13 FDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNqRPGRNPKTGEDIPITARRVvTFRPGQKLKSRVENAS 95 
                 56668899999999********************************8788889988888888777527**********99875 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   7.5e-10   2.7e-06       5      52 ..      10      57 ..       8      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 7.5e-10
  HU-CCDC81_bac_2  5 nsiaeaegisyeeAlqkiekeveelkqeLeeegrveleniGeLslnee 52
                     +++ ++ g+s ++A + +e + ee++++Le++++v+l++ G++ l ++
       CTQ28612.1 10 EYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDK 57
                     5888999************************************88765 PP

>> HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.8e-06     0.014      14      57 ..      16      57 ..      11      60 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.8e-06
  HU-CCDC81_euk_2 14 aglsrdvVescvqetfqalgdllrngknvelefkgiGvLsirnr 57
                     +gls+++++  v+ +f ++ ++l+ng++v+l   g+G++ +r++
       CTQ28612.1 16 LGLSKRDAKELVELFFEEIRRALENGEQVKLS--GFGNFDLRDK 57
                     689**************************986..6898888887 PP

>> HU-DNA_bdg  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0006       2.2      43      77 ..      16      51 ..       2      57 .. 0.85
   2 ?    1.7   0.0     0.069   2.5e+02     102     116 ..      79      93 ..      74      97 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0006
                TTS-HHHHHHHHHHHHHHHHHHHTTT-EEE.-SSEE CS
  HU-DNA_bdg 43 tevrketienilnlykrevseaileGysVn.tglgr 77
                 +++k ++++ ++l+ +e+ +a+++G++V+  g+g+
  CTQ28612.1 16 LGLSKRDAKELVELFFEEIRRALENGEQVKlSGFGN 51
                578999***********************8346665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.069
                 EEEEE-HHHHHHHHT CS
  HU-DNA_bdg 102 vsltqgkeLrealak 116
                 v +++g++L++++++
  CTQ28612.1  79 VTFRPGQKLKSRVEN 93 
                 789*********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 873.10
//
Query:       CTQ28613.1  [L=795]
Description: phenylalanine tRNA synthetase, beta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-72  240.6   0.0    1.1e-71  240.1   0.0    1.3  1  B3_4             B3/4 domain
      1e-54  185.2   0.0    1.8e-54  184.4   0.0    1.4  1  tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM 
    1.5e-28   98.7   0.1    4.3e-28   97.3   0.1    1.8  1  tRNA_bind        Putative tRNA binding domain
    5.5e-28   97.2   0.3    1.4e-27   96.0   0.1    1.8  2  FDX-ACB          Ferredoxin-fold anticodon binding domain
    4.6e-22   78.1   0.5    2.3e-21   75.9   0.2    2.4  2  B5               tRNA synthetase B5 domain
    0.00091   19.4   0.0        1.1    9.5   0.0    3.8  4  PhetRS_B1        Phe-tRNA synthetase beta subunit B1 domain


Domain annotation for each model (and alignments):
>> B3_4  B3/4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.1   0.0   3.7e-75   1.1e-71       1     174 []     212     385 ..     212     385 .. 1.00

  Alignments for each domain:
  == domain 1  score: 240.1 bits;  conditional E-value: 3.7e-75
                 TSSEEEEEEEES--.-----HHHHHHHHHTT-----HHHHHHHHHHHHHT--EEEEEGGGTBTEEEEEE--TTEEEEBTTS-EEEE-TTSEEEETEEEE CS
        B3_4   1 acpryaarvlrgvkktapspewlqrrLrragirpinnvVDitNyvmlelgqPlhafDldkiqgdivvrlakegeklvtldgkereldeedlviadsekp 99 
                 acpry++rv++g++ +ap+p+w++++Lrr+gir+i++vVD+tNyv+lelgqP+hafD d+i+g ivvr+akege+lv+ldg+e +ld+++lviad++k+
  CTQ28613.1 212 ACPRYLGRVVKGINVKAPTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDRDRIEGGIVVRMAKEGETLVLLDGSEAKLDSDTLVIADHNKA 310
                 6************************************************************************************************** PP

                 EEETTTEEBTTTB--TT--EEEEEEEE--HHHHHHHHHHTT---HHHHHHHH---TTTHHHHHHHHHHHHHHHH- CS
        B3_4 100 vslagvmggeeskvsedTknvfleaaafdpvsirktarrlglrseaskrfergvdpekleaaldravallselcg 174
                 +++ g++gge+s+v+++T+nv+le+a+f+p si ++arr+gl+++as+r+ergvdp+++ +al+ra++ll +lcg
  CTQ28613.1 311 LAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRYERGVDPALQYKALERATRLLIDLCG 385
                 **************************************************************************7 PP

>> tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.4   0.0     6e-58   1.8e-54       1     213 [.     474     685 ..     474     686 .. 0.96

  Alignments for each domain:
  == domain 1  score: 184.4 bits;  conditional E-value: 6e-58
  tRNA_synthFbeta   1 IpstlPkapttegelnkeqklrrklrdllagaGlnEvitysfvsekeldklleddderkavelanPlsedqsvlRtsLlpglLevlarNlargn 94 
                      Ip    +a + +g++ ++    +++++ll + G++Evitysfv++k+ + +   +  ++a+ l  P+s+++s++R sL+ glL ++ +N++r++
       CTQ28613.1 474 IPDEPVQAGLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPKVQQLI---HAGEEALILPSPISSEMSAMRLSLWTGLLGTVVYNQNRQQ 564
                      67777777778887777888889*************************999...999************************************* PP

  tRNA_synthFbeta  95 edvrlFEigkvflkd.seeelpeeerhlaivltgkreeeswsekaravdfydlkgivealleslgi.ekvefepaehpalhpgrsAeikvdgke 186
                      ++vr+FE g  f +d ++  ++++  +la++++g+r+ee+w+ ++++vdfydlkg +ea+l+  g  +++ef+++   alhpg+sA i+++g++
       CTQ28613.1 565 SRVRIFESGLRFVPDtNAPLGIRQDVMLAGAICGNRYEEHWTLAKETVDFYDLKGDLEAVLDLTGKlADIEFRAEATTALHPGQSAAIYLKGER 658
                      ***************999999********************************************99*************************** PP

  tRNA_synthFbeta 187 vGvlGelhpevleafdlkqrvyvfEld 213
                      +G++G +hpe+ +++dl++r+ vfEl+
       CTQ28613.1 659 IGFIGVVHPELERKLDLNGRTLVFELE 685
                      *************************97 PP

>> tRNA_bind  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.1   1.4e-31   4.3e-28       1      95 [.      45     145 ..      45     146 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 1.4e-31
                 EEEEEEEEEEEETTSSTEEEEEEEESSSSEEEEEESCTTTST.HHHHTTEEEEEET.TSESE..EETTEEESSEE-EEEC..CESSCEEEEEESST--T CS
   tRNA_bind   1 lrvGkvleaeehpnadkLlvlkvdvGeeeprqivsgaknvye.peelvakkvvvva.nlkpk..klrGveSeGMilsaee..ldekevgilelpadvea 93 
                 ++vG+v+e+ +hpnadkL+v+kv+vG+e+ ++iv+ga+n+++  +++va++++v++  +k+k  klrG+ SeGM++s +e  ++++++gi+elpad+++
  CTQ28613.1  45 VVVGEVVECGQHPNADKLRVTKVNVGGERLLDIVCGAPNCRQgLKVAVATIGAVLPgDFKIKaaKLRGEPSEGMLCSFSElgISDDHSGIIELPADAPI 143
                 79******************************************************95555555******************9**************** PP

                 TC CS
   tRNA_bind  94 Ge 95 
                 G+
  CTQ28613.1 144 GT 145
                 *8 PP

>> FDX-ACB  Ferredoxin-fold anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.6   1.1e+04       6      24 ..     175     193 ..     175     200 .. 0.80
   2 !   96.0   0.1   4.5e-31   1.4e-27       1      94 []     701     794 ..     701     794 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.6
                 EEEEEEEEEESSS-HHHHH CS
     FDX-ACB   6 verDlalvvdekveaaell 24 
                 v rD+a++ ++ ++a e+ 
  CTQ28613.1 175 VARDVAVLNKAPLNAPEIT 193
                 679****999998888776 PP

  == domain 2  score: 96.0 bits;  conditional E-value: 4.5e-31
                 -SS--EEEEEEEEEESSS-HHHHHHHHHHHH-TTEEEEEEEEEEESTTS-SSEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHTT.T-BES CS
     FDX-ACB   1 SkfPaverDlalvvdekveaaelleavreaagellesvqlfDvYrgkklaegkkSlalrltlqskertLtdeevnaaiekvvealekklgaelR 94 
                 S+fPa +rD+a++v e+v+aa++l+ +++ + + +  v+lfDvYrgk++aeg kSla++l+lq+++rtL++ee++a ++++veal+++++a+lR
  CTQ28613.1 701 SRFPANRRDIAVLVAENVAAADVLAECKKVGVNQVVGVNLFDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVARCVEALKERFQASLR 794
                 89*******************************************************************************************9 PP

>> B5  tRNA synthetase B5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.7     5e+03      35      62 ..     153     180 ..     116     182 .. 0.80
   2 !   75.9   0.2   7.7e-25   2.3e-21       1      67 []     406     471 ..     406     471 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.7
                 SSTTCEEEE--TT-TT--SHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
          B5  35 kdkdlllVtvPswRsDlereeDliEEva 62 
                  d++++++ v + R D +  + ++ +va
  CTQ28613.1 153 LDDNTIEISVTPNRADCLGIIGVARDVA 180
                 5788899999999999887777777766 PP

  == domain 2  score: 75.9 bits;  conditional E-value: 7.7e-25
                 EEEEHHHHHHHHTS---HHHHHHHHHHTT-E.EESSTTCEEEE--TT-TT--SHHHHHHHHHHHH-G CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
          B5   1 vslrvekinkllGidlseeeiikiLkrlgceriekdkdlllVtvPswRsDlereeDliEEvaRlyGY 67 
                 ++lr +k+ +l+G +++++++++iL+rlgce+ + ++ +++   PswR D+e eeDl+EEvaR+yGY
  CTQ28613.1 406 ITLRRSKLDRLIGHHIDDAQVTDILQRLGCEV-TVGEGEWQAVAPSWRFDMEIEEDLVEEVARVYGY 471
                 6899***************************8.9999*****************************9 PP

>> PhetRS_B1  Phe-tRNA synthetase beta subunit B1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.094   2.8e+02      13      43 ..      10      40 ..       4      90 .. 0.68
   2 ?    2.8   0.0     0.046   1.4e+02      52      80 ..     154     182 ..     141     185 .. 0.86
   3 !    9.5   0.0   0.00037       1.1       3      35 ..     405     437 ..     403     461 .. 0.91
   4 ?   -2.3   0.0       1.8   5.4e+03      60      73 ..     703     718 ..     701     721 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.094
   PhetRS_B1 13 kalgkelteeeledllfefGlElDeiveeee 43
                + ++  ++ e l+d +   GlE+D ++  + 
  CTQ28613.1 10 EWVNPAIDSEALSDQITMAGLEVDGVEPVAG 40
                55667789999*************9986555 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.046
   PhetRS_B1  52 eeviykidipAnryDLLcleglaralkvF 80 
                 +++++ i +  nr D L + g+ar ++v 
  CTQ28613.1 154 DDNTIEISVTPNRADCLGIIGVARDVAVL 182
                 6778999****************998875 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00037
   PhetRS_B1   3 tisvkkeaLfkalgkelteeeledllfefGlEl 35 
                 ti++++++L++++g+++++ +++d+l ++G E+
  CTQ28613.1 405 TITLRRSKLDRLIGHHIDDAQVTDILQRLGCEV 437
                 899***************************997 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.8
   PhetRS_B1  60 ipAnryDL..Lclegl 73 
                  pAnr D+  L +e++
  CTQ28613.1 703 FPANRRDIavLVAENV 718
                 59*****733555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.48
# Mc/sec: 4970.57
//
Query:       CTQ28614.1  [L=327]
Description: phenylalanyl-tRNA synthetase, alpha-subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.2e-108  359.3   0.1   1.1e-107  359.1   0.1    1.1  1  tRNA-synt_2d     tRNA synthetases class II core domain (F)
    4.6e-27   93.7   1.6    7.7e-27   93.0   1.1    1.7  2  Phe_tRNA-synt_N  Aminoacyl tRNA synthetase class II, N-termin
    0.00013   21.4   0.0    0.00082   18.9   0.0    2.2  3  tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM 
  ------ inclusion threshold ------
      0.043   13.4   0.2       0.69    9.5   0.1    2.1  2  FAD-oxidase_C    FAD linked oxidases, C-terminal domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.1   0.1  2.5e-111  1.1e-107       2     245 .]      92     326 ..      91     326 .. 0.99

  Alignments for each domain:
  == domain 1  score: 359.1 bits;  conditional E-value: 2.5e-111
                   .-TSSCTSCTSHSB-SHHHHHHHHHHHHHHCTTCEESSTTSEEEHHHHTSTTTSTTTSHHHCHTTSEBTCTSSS-ECESEEE-SSTHHHHHHHHTTS CS
  tRNA-synt_2d   2 idvtlpgkrieagklhpltkvleeikeiflelgfeevegpevesefynfdaLnvpqdhpaRdmqdtFylkkpekaveekllLRthttavqirtlekk 98 
                   idv+lpg+rie+g+lhp+t+++++i+++f elgf++++gpe+e++++nfdaLn+p +hpaR+ +dtF++       + ++lLRt+t+ vqirt+e++
    CTQ28614.1  92 IDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF-------DATRLLRTQTSGVQIRTMENQ 181
                   8********************************************************************.......6689***************** PP

                   -SSEEEEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHHHCTSTEEEEEEECEETTEEEEEEEEEEECCSSSSEEEEEEEEEE CS
  tRNA-synt_2d  99 kppikiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleellkklfgaevkvrfrpsyfpftePsaevdvylvekkkkwlEllgaGmv 195
                   +ppi+ii++grv+R+d  D+th+++Fhq+egl+vd+n+s+++lkg+l+++l+++f+++++vrfrpsyfpftePsaevdv+   k++kwlE+lg+Gmv
    CTQ28614.1 182 QPPIRIIAPGRVYRNDY-DQTHTPMFHQMEGLIVDKNISFTNLKGTLHDFLNNFFEEDLQVRFRPSYFPFTEPSAEVDVMG--KNGKWLEVLGCGMV 275
                   *****************.*************************************************************88..************** PP

                   -HHHHHHTT-..TTSEEEEEEEEHHHHHHHHHT-SSGHHHHTT.HHHHGGG CS
  tRNA-synt_2d 196 rpevleavgid.eevsgfafGlGveRlamlkygieDiRelvendlrflrqf 245
                   +p+vl++vgid e +sgfafG+G+eRl+ml+yg++D+R+++endlrfl+qf
    CTQ28614.1 276 HPNVLRNVGIDpEVYSGFAFGMGMERLTMLRYGVTDLRAFFENDLRFLKQF 326
                   *************************************************97 PP

>> Phe_tRNA-synt_N  Aminoacyl tRNA synthetase class II, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   1.1   1.7e-30   7.7e-27       2      69 .]      20      87 ..      19      87 .. 0.98
   2 ?   -3.9   0.0         3   1.3e+04      11      19 ..     257     265 ..     255     267 .. 0.83

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 1.7e-30
                     CCCCCCCCHHHHHCCCCCCCCCCCTTTTCCCCTTTHHHHCCHHHHCCCCCCCCCHHHCCHCCHHHHHC CS
  Phe_tRNA-synt_N  2 dleeLeelRvkyLGkkGeltellkelgklppeeRkeaGkliNelKqeieealeerkeeleaaeleakl 69
                     d ++L+++Rv+yLGkkG+lt ++ +l++lppeeR++aG++iNe+K+++++al++rk+ele a+l+a+l
       CTQ28614.1 20 DVAALDNVRVEYLGKKGHLTLQMTTLRELPPEERPAAGAVINEAKEQVQQALNARKAELEGAALNARL 87
                     789***************************************************************97 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3
                      HHHHCCCCC CS
  Phe_tRNA-synt_N  11 vkyLGkkGe 19 
                      v ++Gk+G+
       CTQ28614.1 257 VDVMGKNGK 265
                      7899**996 PP

>> tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.34   1.5e+03     112     137 ..      46      70 ..      35      89 .. 0.68
   2 ?   -1.9   0.0       0.4   1.8e+03       1      35 [.      92     126 ..      92     128 .. 0.90
   3 !   18.9   0.0   1.8e-07   0.00082      92     208 ..     180     290 ..     166     292 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.34
  tRNA_synthFbeta 112 eelpeeerhlaivltgkreeeswsek 137
                       elp eer  a+++ +++ +e+++++
       CTQ28614.1  46 RELPPEERPAAGAVINEA-KEQVQQA 70 
                      567888888888888887.4444443 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.4
  tRNA_synthFbeta   1 IpstlPkapttegelnkeqklrrklrdllagaGln 35 
                      I  +lP   +  g l++  ++ +++ ++  ++G++
       CTQ28614.1  92 IDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFT 126
                      66789999999999************999999996 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 1.8e-07
  tRNA_synthFbeta  92 rgnedvrlFEigkvflkdseeelpeeerhlaivltgkreeeswsekaravdfydlkgivealleslgiek..vefepaehpalhpgrsAeikvd 183
                      ++++ +r+   g+v+++d +++     +++ ++++ k+            +f +lkg++  +l+++  e+  v+f+p+  p+ +p  sAe+ v 
       CTQ28614.1 180 NQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDKN-----------ISFTNLKGTLHDFLNNFFEEDlqVRFRPSYFPFTEP--SAEVDVM 260
                      56666666667777777744445555556666667777...........9****************9866558888999999999..5777776 PP

  tRNA_synthFbeta 184 gk.....evGvlGelhpevleafdlkqrvy 208
                      gk     ev   G +hp+vl++ +++ +vy
       CTQ28614.1 261 GKngkwlEVLGCGMVHPNVLRNVGIDPEVY 290
                      666679988889**************9998 PP

>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.03   1.3e+02     140     176 ..       2      42 ..       1      56 [. 0.80
   2 ?    9.5   0.1   0.00015      0.69      93     142 ..      55     101 ..      50     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.03
                    HHHHHHHHHHHHHHHHHH....EEEEEEEEEETTEEEEEEE CS
  FAD-oxidase_C 140 srladlvrdikalldkyg....levvlfgHagdgnlhlyil 176
                    s+la+lv+ +ka++++      l+ v++ + g  ++  + +
     CTQ28614.1   2 SHLAELVASAKAAINEASdvaaLDNVRVEYLGKKGHLTLQM 42 
                    8999*******99999999999*********9766654444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00015
                    EEE..........ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHH CS
  FAD-oxidase_C  93 aadvlvaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrl 142
                    aa +++ + +++++++++aRka l+    a+l+a  a+++ D+s+P  r+
     CTQ28614.1  55 AAGAVINEAKEQVQQALNARKAELE---GAALNARLAAETIDVSLPGRRI 101
                    55556777888889***********...999***************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2519.00
//
Query:       CTQ28615.1  [L=165]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1361.35
//
Query:       CTQ28616.1  [L=118]
Description: 50S ribosomal protein L20, also posttranslational autoregulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-49  165.1   9.4    4.9e-49  164.9   9.4    1.0  1  Ribosomal_L20  Ribosomal protein L20
     0.0054   16.7   0.5     0.0081   16.1   0.5    1.2  1  SMC_ScpA       Segregation and condensation protein ScpA


Domain annotation for each model (and alignments):
>> Ribosomal_L20  Ribosomal protein L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.9   9.4   5.5e-53   4.9e-49       1     107 []       3     109 ..       3     109 .. 0.99

  Alignments for each domain:
  == domain 1  score: 164.9 bits;  conditional E-value: 5.5e-53
                    XXX.XXXXXXXXXXXXX--SSS---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHCCTTS---HHHHHHH CS
  Ribosomal_L20   1 RvkrgvaarkrrkkilklakgyrgrrsklyrvakqavekalqyayrdRkkkkrdfrklwitrinaaarenglsYskfingLkkanielnRkvLadl 96 
                    Rvkrgv ar+r+kkilk+akgy+g+rs++yrva qav+ka qyayrdR+++kr+fr+lwi+rinaaar+ng+sYskfingLkka++e++Rk+Lad+
     CTQ28616.1   3 RVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADI 98 
                    9*********************************************************************************************** PP

                    HHH-HHHHHHH CS
  Ribosomal_L20  97 AindpeaFkal 107
                    A+ d+ aF+al
     CTQ28616.1  99 AVFDKVAFTAL 109
                    ********986 PP

>> SMC_ScpA  Segregation and condensation protein ScpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.5     9e-07    0.0081      84     142 ..      46     105 ..      42     116 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 9e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    SMC_ScpA  84 eYrkykeeaklfkeleaerlksfska.rsdleefikeveevavkieksvfklieafnkll 142
                  Yr +++  + f++l + r+   +++     ++fi+ +++  v+i+ ++++ i+ f k+ 
  CTQ28616.1  46 AYRDRRQRKRQFRQLWIARINAAARQnGISYSKFINGLKKASVEIDRKILADIAVFDKVA 105
                 59*****************965555415789*********************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 924.53
//
Query:       CTQ28617.1  [L=123]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1001.09
//
Query:       CTQ28618.1  [L=144]
Description: protein chain initiation factor IF-3 (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-37  127.6   0.5    2.1e-37  126.9   0.5    1.3  1  IF3_C     Translation initiation factor IF-3, C-terminal doma
    2.7e-21   75.6   0.3    6.6e-21   74.4   0.0    1.8  2  IF3_N     Translation initiation factor IF-3, N-terminal doma
  ------ inclusion threshold ------
      0.022   13.9   0.1      0.029   13.5   0.1    1.1  1  DUF2303   Uncharacterized conserved protein (DUF2303)


Domain annotation for each model (and alignments):
>> IF3_C  Translation initiation factor IF-3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9   0.5   3.6e-41   2.1e-37       1      86 []      55     141 ..      55     141 .. 0.99

  Alignments for each domain:
  == domain 1  score: 126.9 bits;  conditional E-value: 3.6e-41
                 S-EEEEEEESS--HHHHHHHHHHHHHHHHHT-EEEEEEE--S-TTSHHHHHHHHHHHHHHHTTTTEEEEEEE.EE-SSEEEEEEEES CS
       IF3_C   1 ievKEiklrpkidehDlevKlknarkFLeegdkvKvtlrfrGReiahkelgkevleriaeeleevakvekkp.klegrqmimvlapk 86 
                 i+vKEik+rp +de+D++vKl+++ +FLe+gdk K+tlrfrGRe+ah+++g+evl+r++++l e+a+ve+ p k+egrqmimvlapk
  CTQ28618.1  55 IQVKEIKFRPGTDEGDYQVKLRSLIRFLEDGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLVELAVVESFPtKIEGRQMIMVLAPK 141
                 79*********************************************************************999************8 PP

>> IF3_N  Translation initiation factor IF-3, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.0   1.1e-24   6.6e-21      23      70 .]       1      48 [.       1      48 [. 0.98
   2 ?   -3.0   0.0       1.5   9.1e+03      38      43 ..     115     120 ..     106     126 .. 0.63

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 1.1e-24
                EEHHHHHHHHHHHTSEEEEEESSSSS-EEEEE-HHHHHHHHHHHHHHH CS
       IF3_N 23 istreAlrlaeekgldLVevspnaepPVcrimdygkfrYeqkkkekea 70
                +s+reA++ aee+g+dLVe+spnaepPVcrimdygkf+Ye++k  ke+
  CTQ28618.1  1 MSLREAIEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQ 48
                899*******************************************97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.5
                 EEEEEE CS
       IF3_N  38 dLVevs 43 
                 dLVe++
  CTQ28618.1 115 DLVELA 120
                 677765 PP

>> DUF2303  Uncharacterized conserved protein (DUF2303)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   4.8e-06     0.029     180     256 ..      36     115 ..      32     123 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.8e-06
     DUF2303 180 dfsfkeeakesveak.lklPeqftlaippyeggaerrielr..lryrtddgelvlilrlvraeavleeaaeefaeeieee 256
                 +f ++++++++ ++k  k+ +  +++++p   +  ++++lr  +r++ d+++ +++lr    e + +++  e+++ +++ 
  CTQ28618.1  36 KFLYEKSKSSKEQKKkQKVIQVKEIKFRPGTDEGDYQVKLRslIRFLEDGDKAKITLRFRGREMAHQQIGMEVLNRVKDD 115
                 567777777777777799999999999**999999999998668999999**********************99999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1041  (0.0580624); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1140.98
//
Query:       CTQ28619.1  [L=642]
Description: threonyl-tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-51  173.6   0.0    8.5e-51  172.4   0.0    1.6  2  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    1.4e-23   82.8   1.6    4.2e-23   81.3   1.6    1.8  1  HGTP_anticodon  Anticodon binding domain
    1.2e-14   54.1   0.1    7.1e-13   48.4   0.0    2.5  2  TGS             TGS domain
    2.2e-14   53.2   0.0    4.6e-14   52.2   0.0    1.5  1  tRNA_SAD        Threonyl and Alanyl tRNA synthetase second ad


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.4   0.0   1.9e-54   8.5e-51       1     178 [.     318     528 ..     318     529 .. 0.96
   2 ?   -3.7   0.0       2.2   9.9e+03      78     138 ..     549     571 ..     546     596 .. 0.55

  Alignments for each domain:
  == domain 1  score: 172.4 bits;  conditional E-value: 1.9e-54
                   EEEEETTSEEEEE-SSSHHHHHHHHHHHEEEBGG.SSEEEEEEEEEEBTTTS.TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   1 YkledrndreyiLkPtneetfvelirdevlrskr.LPlklyqiqtkyRdEks.dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlg 95 
                   ++++++n rey++kP+n++++v+++++  l+s+r LPl+++++++++R+E+s +++GL+Rvr+F+q+d+++f++e++++d+++ +i+ ++++++++g
    CTQ28619.1 318 FTTSSEN-REYCIKPMNCPGHVQIFNQG-LKSYRdLPLRMAEFGSCHRNEPSgALHGLMRVRGFTQDDAHIFCTEDQVRDEVNACIRMVYDMYSTFG 412
                   5677787.*****************966.***777*****************9******************************************** PP

                   .SCEEEEEEGTTSC.................................BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEE CS
                   xxxxxxxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  96 lefraiielmsaks.................................adykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksv 159
                   +e+ +++++++ ++                                 a+y++k ef+++++ l++++++gt+q + ++l++rl+a+++ enn+++ +
    CTQ28619.1 413 FEKIVVKLSTRPEKrigsdetwdraeadlavaleennipfeyqlgegAFYGPKIEFTLYDC-LDRAWQCGTVQLD-FSLPQRLSASYVGENNERQVP 507
                   *********888778999*******************************************.*************.********************* PP

                   EEEEEE.EE.HHHHHHHHHHH CS
                   xxxxxx.xx.xxxxxxxxxxx RF
  tRNA-synt_2b 160 imicaa.ig.veRllsaileq 178
                   +mi++a +g +eR++++++e+
    CTQ28619.1 508 VMIHRAiLGsLERFIGILTEE 528
                   *******9*********9997 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.2
                   HHHHHHHHHHHHHHHHTT.SCEEEEEEGTTSCBTTSEEEEEEEEETTTSEEEEEEEEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  78 dslrdlikaisriferlglefraiielmsaksadykdkkefeavsesltkgieigtiqklg 138
                   ds ++++++  r +++ g+ +                                      + 
    CTQ28619.1 549 DSQAEYVNELTRKLQNAGIRV--------------------------------------KA 571
                   555566666666666655554......................................33 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   1.6   9.3e-27   4.2e-23       1      93 [.     541     630 ..     541     631 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 9.3e-27
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklke 93 
                     qvvv+++++      ey+++l ++L++agirv+ d +ne+ig+kire+ l  +p+++v G+ke+e g+v+vr+r  ++  +++++e++ekl++
      CTQ28619.1 541 QVVVMNITD---SQAEYVNELTRKLQNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSMDVNEVIEKLQQ 630
                     899*****9...889****************************************************************************97 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   1.6e-16   7.1e-13       3      60 .]       4      61 ..       2      61 .. 0.97
   2 ?    2.9   0.0     0.025   1.1e+02      41      55 ..     101     117 ..      91     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.6e-16
                EEETTSSEEEEETTB-HHHHHHHHSTTHHHHEEEEEECSEEEETTSBB-SSEEEEEEE CS
         TGS  3 vytPdGkvpdlprgatveDfAykIhrslakkfiyAlVnGqrvgldhvLedgdvveIvt 60
                +++PdG++ ++++  +++D+A  I+ +lak++i+++VnG++v+ + ++e++ +++I+t
  CTQ28619.1  4 ITLPDGSQRHFDHAVSPMDVALDIGPGLAKATIAGRVNGELVDACDPIESDSTLSIIT 61
                677*****************************************************98 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.025
                 S..EEEETTSBB-SSEE CS
         TGS  41 G..qrvgldhvLedgdv 55 
                 G    v+ldh+L ++d+
  CTQ28619.1 101 GfyYDVDLDHTLTQEDI 117
                 455579*********96 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0     1e-17   4.6e-14       3      44 .]     172     219 ..     171     219 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 1e-17
                 EEEETT.EEEEESS---SBGGGC-SEEEE.......CCECCCTCEEEEE CS
    tRNA_SAD   3 vvsiGdisvelCgGtHvpnTgeIgafkil.......seesiakglrRIy 44 
                 ++++++ ++++C+G+Hvpn++++ +fk++       +++s++k+l+RIy
  CTQ28619.1 172 LYHHEE-YIDMCRGPHVPNMRFCHHFKLMktagaywRGDSNNKMLQRIY 219
                 588998.*****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       926  (0.0516482); expected 358.6 (0.02)
Passed bias filter:                      722  (0.04027); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.23s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4995.64
//
Query:       CTQ28620.1  [L=77]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 620.67
//
Query:       CTQ28621.1  [L=21]
Description: hypothetical protein CH1034_240118 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (21 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       205  (0.011434); expected 358.6 (0.02)
Passed bias filter:                      102  (0.00568911); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 178.47
//
Query:       CTQ28622.1  [L=252]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-55  186.4   8.6    7.5e-55  186.2   8.6    1.0  1  DUF481    Protein of unknown function, DUF481


Domain annotation for each model (and alignments):
>> DUF481  Protein of unknown function, DUF481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.2   8.6   4.2e-59   7.5e-55       1     211 [.      47     251 ..      47     252 .] 0.99

  Alignments for each domain:
  == domain 1  score: 186.2 bits;  conditional E-value: 4.2e-59
      DUF481   1 velGlslktGNtettslnaalklkrrtgrwrlslkaeyeygesngettaekyrvslqydyklserlylfalgsyetDrfsgldsratlgaGlGyrlidt 99 
                 v++G+ +++GNt+++s++a+ +l++  +++ +sl++++ +++sn+e+++eky v ++++y+l++ +y+f++gs+ tDr++g+++r ++ aG+G+++++ 
  CTQ28622.1  47 VNAGYLAQSGNTKSSSMTADSTLTWYGNTTAWSLWGNASNTSSNDERSSEKYAVGGRSRYNLTDMNYVFGQGSWLTDRYNGYQQRDVVTAGYGRQILNG 145
                 79************************************************************************************************* PP

      DUF481 100 dktklsleaGpgyrytkytdeeeeedeeevilrlsldyeykisdnvsftqdlevevnleggsnttlrsetgltvkltdalslkisyevdydsdppe.gk 197
                 + ++l++e Gpg+ry++ytd+   +++++  + +s  + ++++dn++f+q ++v +   g+++tt++se +l+v ++ +++lk++y+v+++s+pp+   
  CTQ28622.1 146 PVHSLRFEFGPGVRYDEYTDG---DTDTQPLGYASGTWAWQMTDNAKFSQGVSV-F---GAEDTTVNSESALNVAINAHFALKVAYNVTWNSEPPAsAP 237
                 *********************...******************************.5...7************************************778 PP

      DUF481 198 kktDtrlsvsLvys 211
                 ++tD+r+s+sL+y+
  CTQ28622.1 238 EHTDRRTSLSLGYK 251
                 *************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1940.36
//
Query:       CTQ28623.1  [L=310]
Description: 6-phosphofructokinase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-56  192.2   0.1    1.5e-56  192.0   0.1    1.0  1  PfkB          pfkB family carbohydrate kinase
    9.5e-06   25.2   0.0    1.6e-05   24.5   0.0    1.3  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
  ------ inclusion threshold ------
      0.013   15.0   0.1      0.017   14.6   0.1    1.2  1  Carb_kinase   Carbohydrate kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.0   0.1   2.5e-60   1.5e-56      19     299 ..      20     296 ..       7     299 .. 0.94

  Alignments for each domain:
  == domain 1  score: 192.0 bits;  conditional E-value: 2.5e-60
                 SSHTTSEE.EESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTTSEEEEEEEEGGGGGHH CS
        PfkB  19 eklegelv.evktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvdedgertivfnrgaaadlt 116
                  ++++e + +++  ++ +GG g+NvA+a+  lg+++++i+ vG+ + Ge+l+++l++e+v+++ v+  ++tr++l + v  ++++  +v+   a  d +
  CTQ28623.1  20 PQIYPEGKlRCSAPVFEPGGGGINVARAVTFLGGKATAIFPVGGAT-GEHLAALLADEQVPVETVETRDWTRQNLHVHVAASGEQYRFVMPGAALTDDE 117
                 333677788*************************************.**********************************998899999999999999 PP

                 HHHHHHHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHH CS
        PfkB 117 keeleededlleeadllyisgllsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkpneeElealtgekledieealaalhkl 215
                 ++ lee++  +e ++ll++sg+l++++++++l +l + a+++g   +++ d++g+ ++ a l+ +  + l+kpn++El+al++++l +++++  a++ l
  CTQ28623.1 118 FRRLEEKVLTIEPGSLLVVSGSLPPGISVDNLMQLVKNAQQQG--LRCIIDSSGD-ALAAALD-VGNIELVKPNQKELSALVQRDLSQPDDVRLAAQSL 212
                 999****************************************..*********7.6666666.68********************************* PP

                 HHTTS.SEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSSSTCS CS
        PfkB 216 kakga.ktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqkkgaiasl 299
                 +++g+ + vvv+lG +Gal v+ +g+++v + p+ k  +t+GAGDs+vg+++  l+e++sle+++rf++a++++++ ++g++ ++
  CTQ28623.1 213 IQSGKvRRVVVSLGPQGALGVDASGSVQVVP-PPMKSQSTVGAGDSMVGAMTLRLAENASLEDMVRFGVAAGSAATINQGTRLCS 296
                 *******************************.99**********************************************99876 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.6e-09   1.6e-05     119     224 ..     180     279 ..     157     295 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.6e-09
                   G-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHH.TT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BTHHHHHHHHHHHHHHCT CS
  Phos_pyr_kin 119 latvitPNlpEaeaLlgekikteedmkeaakkllk.lgakaVlikGghlegeeavvtdvlydgeeveeleaerietknthGtGCtlssaiaaelakg 214
                     +++ PN +E++aL+++++++ +d++ aa++l++  +++ V++  g           + +d ++ +++  + +++++t G+G+++  a++ +la++
    CTQ28623.1 180 NIELVKPNQKELSALVQRDLSQPDDVRLAAQSLIQsGKVRRVVVSLGPQ----GA---LGVDASGSVQVVPPPMKSQSTVGAGDSMVGAMTLRLAEN 269
                   6789*******************************66789999988862....22...456888888888899999********************* PP

                   SSHHHHHHHH CS
  Phos_pyr_kin 215 esleeAvkkA 224
                    sle+ v+ +
    CTQ28623.1 270 ASLEDMVRFG 279
                   ****999865 PP

>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   2.9e-06     0.017      84     219 ..     150     284 ..     119     307 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.9e-06
                  HHHCHHHCCCCS-EEEEGGGGGSGGGG...TTTTSSEEEE--HHHHHHHCTTTCHHCCSHHHHHHHHHH..HHTTEEEEESTTSEE.EECTTEEEEE- CS
  Carb_kinase  84 kklleevlekdeplviDAdgLnllaqknelserkaeviLTPhkkEfkrLlkaivkkeddrlelarelaq..klnavvllkgekdvi.vspegevlins 178
                   +l++++ ++   ++iD +g +l a      +  +     P++kE + L++  + + dd+  +a+ l+q  k+  vv+  g +  + v+  g v  ++
   CTQ28623.1 150 MQLVKNAQQQGLRCIIDSSGDALAAAL----DVGNIELVKPNQKELSALVQRDLSQPDDVRLAAQSLIQsgKVRRVVVSLGPQGALgVDASGSVQVVP 243
                  344444444444589998877777775....333444568***********999888888888888887346778999999776653778******** PP

                  ---GGG-STTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHH CS
  Carb_kinase 179 tgssalakGGsGDvLaGligalLaqneasyeaaiaaawlhg 219
                       + + G GD + G++ + La n++  + +  ++ + +
   CTQ28623.1 244 PPMKSQSTVGAGDSMVGAMTLRLAENASLEDMVRFGVAAGS 284
                  **************************955555444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2462.34
//
Query:       CTQ28624.1  [L=94]
Description: hypothetical protein CH1034_240121 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-38  129.3   0.1    4.4e-38  129.1   0.1    1.0  1  GhoS      Endoribonuclease GhoS


Domain annotation for each model (and alignments):
>> GhoS  Endoribonuclease GhoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.1   2.5e-42   4.4e-38       3      93 ..       2      92 ..       1      93 [. 0.98

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 2.5e-42
                ....--EEEEEE--GGGHHHHHHHHHHHHHTTEESEEE-SSS-EEE-TTSEEEE---S-HHHHHHHHHHGGGTSS----EEEEEEHHHHHT CS
        GhoS  3 ssdvtrYvvtvkyhekslseinelnsvltragFsltlaDeeGkpheLgtntfglisalseeeieelaaglaesalgkkpevevltveeylk 93
                s+++t++vv+v++he++l+eine+++++tragF+ltl+DeeG pheLgtntfgl+s +++ee+++l+aglae+alg+ +e++v+t+ e+lk
  CTQ28624.1  2 SNEITAWVVSVTFHEQALTEINEVSNHFTRAGFVLTLNDEEGSPHELGTNTFGLLSGQTAEEVKALSAGLAEAALGRPAEIAVATFAEWLK 92
                689**************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 746.49
//
Query:       CTQ28625.1  [L=290]
Description: putative phosphotransferase/kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.1e-113  377.1   0.0   5.8e-113  376.9   0.0    1.0  1  Fructosamin_kin  Fructosamine kinase
    6.2e-22   78.7   1.8    9.3e-22   78.1   1.8    1.1  1  APH              Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Fructosamin_kin  Fructosamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.9   0.0  6.5e-117  5.8e-113       1     287 [.       1     286 [.       1     287 [. 0.99

  Alignments for each domain:
  == domain 1  score: 376.9 bits;  conditional E-value: 6.5e-117
  Fructosamin_kin   1 mwkaiaqllsealgkafeiteaekveggeineayllseeeqrfFvklnekealemFeaEaesLealaetqtirvPkvlavGelkdasfLvleyL 94 
                      mw+ai++ll + ++++ ei+ ++++ ggei++a++l+ + +++Fvk++e+e l++F+aE ++Le+l++++t+rvP+v+avG+ +d sf+v+eyL
       CTQ28625.1   1 MWQAISTLLRDWHTEDAEIELKTELPGGEIHSAWHLRFGGKDYFVKCDERELLPIFTAESDQLELLSRSKTVRVPQVFAVGSDRDYSFVVMEYL 94 
                      9********************************************************************************************* PP

  Fructosamin_kin  95 elklekkesaaelgqqLaklHraseqkefGfdvdntigktpqpNewqssWaeFfaeqRlgvqlelakekglefakieelvervaellskhqpkp 188
                      + +  ++++a+ lgqqLa+lH++s+q++fG+d+dn +++tpqpN+wq++W+ FfaeqR+g+qlela+ekgl+f++i++lv++v+++l++hqp+p
       CTQ28625.1  95 PPRPLDAHNAFLLGQQLAHLHQWSDQPQFGLDFDNDLSTTPQPNAWQRRWSVFFAEQRIGWQLELAAEKGLHFGDIDTLVDMVQQRLANHQPQP 188
                      ***7778*************************************************************************************** PP

  Fructosamin_kin 189 sllHGdLWsgNaaltkdgepvifdPaayygdrEvdlamtelfggfpsefyegYqsivpldegyeeRkelYqLYhlLnhlnlFgggylsqaqkli 282
                      sllHGdLWsgN+al+ dg p+ifdPa+y+gdrE+dlam+ ++ + p+++y+gYqs+ pl +g+ +R+++YqLY lLn++ lFgg++l +aq+++
       CTQ28625.1 189 SLLHGDLWSGNCALGPDG-PYIFDPACYWGDRECDLAMLPMHPEQPPQIYDGYQSVSPLPSGFLDRQPIYQLYTLLNRAILFGGQHLVTAQQAL 281
                      ******************.*************************************************************************** PP

  Fructosamin_kin 283 qkllk 287
                      +++l 
       CTQ28625.1 282 DDVLM 286
                      *9985 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   1.8     1e-25   9.3e-22       3     224 ..      23     240 ..      23     246 .. 0.85

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 1e-25
                 EEE--.SSCEEEEEEETT--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHH CS
         APH   3 relsggasnrtylvttpagryvlrrnpparaaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealge 100
                 +el+gg +   +++  ++++y+++  + + + + + +e + l lL++++  +vP+v+a    + ++ + f+++ey+p+r+l+         + +  lg+
  CTQ28625.1  23 TELPGGEIHSAWHLRFGGKDYFVKCDERE-LLPIFTAESDQLELLSRSKTvRVPQVFA---VGSDRDYSFVVMEYLPPRPLDA--------HNAFLLGQ 109
                 589**************************.999999999999999988778*******...88999999**************........78889*** PP

                 HHCCHHCH..-STTTB-.............SHHCHTCCHHHHHHCHHHCCCGCCTCC..HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC.. CS
         APH 101 flaalhqvd.paalpla.............dflaqdlellrqlesatarllaselld..lleeleeqvlaalaallpgelptvllHgDlhpgNllvdpd 183
                  la+lhq + +++ +l+             + +++ +++++q+  ++  l a++ l   ++  l + v ++la + p   +++llHgDl +gN  + pd
  CTQ28625.1 110 QLAHLHQWSdQPQFGLDfdndlsttpqpnaWQRRWSVFFAEQRIGWQLELAAEKGLHfgDIDTLVDMVQQRLANHQP---QPSLLHGDLWSGNCALGPD 205
                 ********666666666566666666666699999999999999998766666666667777777779999999999...9****************66 PP

                 TTEEEEE---TT-EEEECCHHHHCCHHHCSCHCCCHCHHHH CS
         APH 184 dgrvtGviDfedaglgpplyDlavllrswtseldpeflaal 224
                  g+   ++D  +  +g++ +Dla+l+++   e+ p  ++++
  CTQ28625.1 206 -GPY--IFDPAC-YWGDRECDLAMLPMH--PEQPPQIYDGY 240
                 .665..9***86.6************88..78888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2401.08
//
Query:       CTQ28626.1  [L=248]
Description: membrane spanning protein in TonB-ExbB-ExbD complex [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-36  125.0  55.2    3.6e-36  124.6  55.2    1.2  1  TonB_N    TonB polyproline region
    1.7e-17   63.6   0.0    3.6e-17   62.6   0.0    1.6  1  TonB_C    Gram-negative bacterial TonB protein C-terminal


Domain annotation for each model (and alignments):
>> TonB_N  TonB polyproline region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6  55.2   4.1e-40   3.6e-36       1     134 []      36     167 ..      36     167 .. 0.91

  Alignments for each domain:
  == domain 1  score: 124.6 bits;  conditional E-value: 4.1e-40
                 XXXXXXXXXXX.XXXXXXXXXXXXXXX....XXXXXXXXXXX..XXXXXXXXXXXXX..XXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXX.XXXX CS
      TonB_N   1 eqvielPkaeqkpisvtmvapaelepPapaaaepePapePavepePePePEvvPePp..apvviekPkPe..PkPkPkPkpvkkvekkkrevkp.tear 94 
                 +qvie+P+++q pi++tmvapa+lepP    ++++P  eP+vepePePePEvvPePp  apvvi+kP+P+  PkPkPkPkp+kkve++krevkp +e+r
  CTQ28626.1  36 HQVIEQPSPTQ-PIEITMVAPADLEPP----PAAQPVVEPVVEPEPEPEPEVVPEPPkeAPVVIHKPEPKpkPKPKPKPKPEKKVEQPKREVKPaAEPR 129
                 79*********.***************....999********************************998833556889999*************99*** PP

                 XXXXXXXX...XXXXXXXXXXXXXXXXXXXXX--SS-EEE CS
      TonB_N  95 pesPfendesaasarpvtaaataaaaspsvsaasgPrals 134
                 p+sPfen+++ a+ar +++++++aaa+p+v+a+sgPra+s
  CTQ28626.1 130 PASPFENNNT-APAR-TAPSTSTAAAKPTVTAPSGPRAIS 167
                 ********55.6777.6677788999************86 PP

>> TonB_C  Gram-negative bacterial TonB protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0     4e-21   3.6e-17       2      77 ..     170     240 ..     169     243 .. 0.90

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 4e-21
                 -----HHHHHHTEEEEEEEEEEE-TTSBEEEEEEEEESSSSCSHHHHHHHHTT-EE-TT--EEE......EEEEEE CS
      TonB_C   2 epeYPeeArrrgieGtvtveftidpdGnvtnvkvvkssgseiLdkaAleavrkwkfkpapkngkpvtvkitvpirF 77 
                 +p+YP++A++ +ieGtv+v+f+++pdG+++n+++++  +  ++++++  a+r+w+++ +  +   vt++i    +F
  CTQ28626.1 170 QPSYPARAQALRIEGTVRVKFDVSPDGRIDNLQILSAQPANMFEREVKSAMRRWRYEQGRPG-TGVTMTI----KF 240
                 89********************************************************9985.3555555....33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1816.15
//
Query:       CTQ28627.1  [L=98]
Description: putative enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-26   92.1   0.0    2.4e-26   92.0   0.0    1.0  1  YCII      YCII-related domain
    0.00014   22.1   0.0    0.00019   21.7   0.0    1.3  1  DUF1330   Domain of unknown function (DUF1330)


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   2.6e-30   2.4e-26       1      94 [.       1      94 [.       1      95 [. 0.99

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 2.6e-30
                EEEEEEEEE-TTGHHHHHHHHHHHHHHHHHHHHTTGEEEEEEEECSCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT-HHHHTTEEEEEEEEEE CS
        YCII  1 MlyvilaydkpasleeraallaahlayleelkkeGvllaaGpklvidGpfaetkeqlgGfyiveaadldeaieiaardPfveaGlveerevkef 94
                Mlyvi+a d  +sle+r ++++ahla+l+ l++eG+ll+aGp+++ d++ ++++++ g+++i+e+++l++a+++a +dP+++aG++ ++ vk+ 
  CTQ28627.1  1 MLYVIYAEDIADSLEKRLSVRPAHLARLQLLHDEGRLLTAGPMPAVDSNEPGAAGFSGSTVIAEFESLEAAQAWANDDPYIAAGVYRQVSVKPY 94
                9******************************************************************************************986 PP

>> DUF1330  Domain of unknown function (DUF1330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.1e-08   0.00019      51      81 ..      58      88 ..      23      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.1e-08
     DUF1330 51 trlvvieFpsveaarawyeSpeYqaakalRq 81
                  +v+ eF+s+eaa+aw +++ Y aa   Rq
  CTQ28627.1 58 GSTVIAEFESLEAAQAWANDDPYIAAGVYRQ 88
                689********************99988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.27s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 747.81
//
Query:       CTQ28628.1  [L=215]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-37  126.8   1.4    1.1e-36  126.6   1.4    1.1  1  YceI      YceI-like domain


Domain annotation for each model (and alignments):
>> YceI  YceI-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   1.4   6.1e-41   1.1e-36       1     146 []      50     212 ..      50     212 .. 0.93

  Alignments for each domain:
  == domain 1  score: 126.6 bits;  conditional E-value: 6.1e-41
                 EEE-CCC-EEEE........-EEEEECTECCEEEE..TTT..EEEEEEEEGGGEESS.HCHHHHHHCTCTT-TTT--EEEECCCCEE........EEEE CS
        YceI   1 YtldpahssvtftvkhlgvskvtGrfkkvsgelsvdeddp.essvevtidvasidtgnakrdehlksadffdvakyPtatFvstsve......akvtGd 92 
                 Y+ldp+h+sv ++++h+g+s+ t  +++vsg+l++d+++p +ssv+vt++v++id++++ + +++ ++++fdv+++P+atF+st+ve      ++v+G+
  CTQ28628.1  50 YSLDPQHTSVVISWNHFGFSNPTAYISDVSGKLAFDKENPeKSSVNVTLPVKTIDAHVKALTDEFLGKEYFDVKTFPDATFQSTKVEskgdnkYDVEGN 148
                 99**************************************88*****************9*8888888*************************89**** PP

                 EEETTEEEEEEEEEEEEE.EE........CCEECEEEEEGGGGTC...TTTC-SEEEEEEEEEE CS
        YceI  93 LtikGvtkpvtlpvtvng.aa........agfsatgtidrtdFGlkr.galvgdeveleielea 146
                 LtikG+tkpv l++ +n+ ++        +gf+atg+i+r+dF l++   +v+d+v++++++ea
  CTQ28628.1 149 LTIKGITKPVVLHAVLNKqDMhpmvkkeaIGFDATGVIKRSDFKLDKyVPAVSDNVTITLSTEA 212
                 ****************962436677777788**************889678*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1711.46
//
Query:       CTQ28629.1  [L=65]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.28s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 477.92
//
Query:       CTQ28630.1  [L=68]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 559.12
//
Query:       CTQ28631.1  [L=486]
Description: cardiolipin synthase 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-37  128.2   0.0      1e-22   80.5   0.0    2.5  3  PLDc_2    PLD-like domain
    4.6e-16   58.3   0.9    2.2e-07   30.8   0.0    2.7  3  PLDc      Phospholipase D Active site motif
    5.5e-07   29.4   5.6    1.2e-06   28.3   5.6    1.6  1  PLDc_N    Phospholipase_D-nuclease N-terminal


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.6   9.5e+03      35      45 ..      21      31 ..       5      42 .. 0.81
   2 !   45.1   0.0   1.4e-15   8.6e-12       1     101 [.     134     242 ..     134     267 .. 0.78
   3 !   80.5   0.0   1.7e-26     1e-22       7     124 ..     332     445 ..     326     454 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.6
      PLDc_2 35 rgvkvrillds 45
                 gv +ril+ +
  CTQ28631.1 21 AGVTLRILMKR 31
                68999999987 PP

  == domain 2  score: 45.1 bits;  conditional E-value: 1.4e-15
      PLDc_2   1 liqliksAkksidiatyyfvsdrei...ldallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfet......ll....gslHaKl 86 
                 li+ i+ A+++i ++ y+ ++       +++l++aa+rgv++r++lds     g+v    ++ +++++++ag+ev +  +      +l     + H+K+
  CTQ28631.1 134 LIRDIQLARHNIEMVFYIWQPGGMAdsvAESLMAAARRGVHCRLMLDSA----GSV-AFFRSPWAAMMRNAGIEVVEALKvnlmrvFLrrmdLRQHRKM 227
                 6788999**********9955444244499*****************93....333.35678888888999999888774445445115556899**** PP

      PLDc_2  87 ylidgktvivGSsNl 101
                 ++id+ ++++GS+N+
  CTQ28631.1 228 VMIDNYIAYTGSMNM 242
                 **************7 PP

  == domain 3  score: 80.5 bits;  conditional E-value: 1.7e-26
      PLDc_2   7 sAkksidiatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfetllgslHaKlylidgktvivGSsNltkrg 105
                  Ak+++ + t+yfv+++++l a++ aa+rgv+v i+l++ k+d+ +v  as++ + el l+agv+++ fe   g lH+K +l+dg+  +vG++Nl+ r+
  CTQ28631.1 332 AAKEHLIMTTPYFVPSDDLLHAICTAAQRGVDVSIILPR-KNDSLLVGWASRAFFTEL-LAAGVKIYQFEG--GLLHTKSVLVDGELSLVGTVNLDMRS 426
                 699***********************************9.678899999*********.99******9986..789*********************** PP

      PLDc_2 106 ldlnlElnvviedkelake 124
                 l ln+E+ +vi+d+ + + 
  CTQ28631.1 427 LWLNFEITLVIDDAGFGSD 445
                 *************966554 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   3.7e-11   2.2e-07       1      28 []     219     246 ..     219     246 .. 0.93
   2 !   25.6   0.0   1.5e-09   9.1e-06       2      28 .]     400     426 ..     399     426 .. 0.95
   3 ?   -3.6   0.0       2.5   1.5e+04      10      15 ..     435     440 ..     434     442 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 3.7e-11
                 TTBEE---EEEETTTEEEEE---SSHHH CS
        PLDc   1 ymgthHqKivivDdrvafvGgaNLcdgr 28 
                 ++ ++H+K+v++D+++a+ G++N+ d r
  CTQ28631.1 219 MDLRQHRKMVMIDNYIAYTGSMNMVDPR 246
                 5789********************9986 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 1.5e-09
                 TBEE---EEEETTTEEEEE---SSHHH CS
        PLDc   2 mgthHqKivivDdrvafvGgaNLcdgr 28 
                 +g++H+K v vD+++++vG+ NL++++
  CTQ28631.1 400 GGLLHTKSVLVDGELSLVGTVNLDMRS 426
                 799**********************97 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 2.5
                 EEETTT CS
        PLDc  10 vivDdr 15 
                 +++Dd+
  CTQ28631.1 435 LVIDDA 440
                 89**96 PP

>> PLDc_N  Phospholipase_D-nuclease N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   5.6   2.1e-10   1.2e-06       6      41 ..      23      59 ..      17      60 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 2.1e-10
      PLDc_N  6 alidiird.rnpssklaWllvilflPvlGailYllfG 41
                + ++i+++ r   s +aWll+i +lP++G+i+Yl fG
  CTQ28631.1 23 VTLRILMKrRAVPSAMAWLLIIYILPLVGIIAYLSFG 59
                56778885366666**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3548.08
//
Query:       CTQ28632.1  [L=109]
Description: hypothetical protein CH1034_240129 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-45  152.7   0.4    3.1e-45  152.6   0.4    1.0  1  DUF440    Protein of unknown function, DUF440


Domain annotation for each model (and alignments):
>> DUF440  Protein of unknown function, DUF440
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.6   0.4   1.7e-49   3.1e-45       1     101 []       8     109 .]       8     109 .] 0.97

  Alignments for each domain:
  == domain 1  score: 152.6 bits;  conditional E-value: 1.7e-49
      DUF440   1 rltedealdqaydiFlelaadnLdpadillfnlqfeerGavelvepaedWeeevgvevdkeeyaevliGL.eeeqdelddiFariLisrdkdekechil 98 
                 rltede+l+qaydiFlelaadnLdpadi+lfnlqfeerG++el++p++dWee+v+ +++++++aev+iGL  ++  e++diFar+L++r+kd+k chil
  CTQ28632.1   8 RLTEDETLEQAYDIFLELAADNLDPADIILFNLQFEERGGAELFDPSADWEEHVDYDLNPDFFAEVVIGLaDTDGGEINDIFARVLLCREKDHKLCHIL 106
                 579*******************************************************************777889*********************** PP

      DUF440  99 Wke 101
                 W+e
  CTQ28632.1 107 WRE 109
                 *85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 815.41
//
Query:       CTQ28633.1  [L=277]
Description: Potassium voltage-gated channel subfamily KQT [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-27   94.4  19.0    7.8e-27   94.1  19.0    1.1  1  Ion_trans      Ion transport protein
    1.9e-16   59.8   9.8    1.9e-16   59.8   9.8    2.3  3  Ion_trans_2    Ion channel
      1e-05   24.4   3.4      1e-05   24.4   3.4    2.1  2  PKD_channel    Polycystin cation channel
    0.00059   19.8   1.8     0.0009   19.2   1.8    1.3  1  DZR            Double zinc ribbon
     0.0015   18.2   1.7     0.0069   16.1   0.1    2.1  2  zinc_ribbon_2  zinc-ribbon domain
  ------ inclusion threshold ------
       0.88    9.7   7.2        1.2    9.3   0.6    2.4  2  UPF0547        Uncharacterised protein family UPF0547


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1  19.0   2.6e-30   7.8e-27       3     237 ..      32     240 ..      24     248 .. 0.87

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 2.6e-30
                 HHHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH..HHHH...HHHHHH CS
   Ion_trans   3 vfelfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl..vlse...esllll 95 
                 +f+l+++l+i++ + + +  +        + +i+ +lel++ta+ftle ll+i + ++  +++Y+ ++w ++D+  +lp ++ +     e   + +++ 
  CTQ28633.1  32 LFALLSVLVIFIESGLGTQYHLTLD----EwHIFVWLELLVTAVFTLEYLLRIATWPN--PLHYIFSFWGLIDLATILPLYVMWlwP--EislNYVFAW 122
                 3556666666666666655333333....359***********************999..9*********************88550..3455679*** PP

                 HHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSS CS
   Ion_trans  96 svlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmtteg 194
                 +++r++r lr+lkl++ +++l ++ +a++ +  +l+++  ++++v++if+++++ +                +p   ++ F+++  +++w+++++tt+g
  CTQ28633.1 123 RAMRAIRALRILKLLRFMPSLNVFWRAIVSARHQLILFYSFIAIVMVIFGSLMYLIE---------------GP---EYGFTTLNASVYWAIVTITTVG 203
                 ****************************************************98888...............45...55688899************** PP

                 HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 195 wgdilyatldekskvaliyfvifiilgsflllNlliaviadnf 237
                 +gdi+++t  ++      ++++++il+++ +++++ ++i++  
  CTQ28633.1 204 YGDITPHTPLGR------ILASILILIGYSIIAIPTGLITTHM 240
                 ************......*********************9865 PP

>> Ion_trans_2  Ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.7   5.2e+03      64      77 ..      30      43 ..      26      54 .. 0.61
   2 ?   -1.3   0.2      0.73   2.2e+03      49      74 ..      57      81 ..      46      84 .. 0.71
   3 !   59.8   9.8   6.3e-20   1.9e-16       2      76 ..     164     239 ..     163     242 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHH CS
  Ion_trans_2 64 alfalflavlgkvl 77
                 + ++++l+vl++++
   CTQ28633.1 30 CGLFALLSVLVIFI 43
                 44444444444443 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.73
                 ----HHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2 49 dagrlftivyillGlalfalflavlg 74
                 ++  +f+++++l+  ++++ +l  ++
   CTQ28633.1 57 EW-HIFVWLELLVTAVFTLEYLLRIA 81
                 45.67888888888888776666665 PP

  == domain 3  score: 59.8 bits;  conditional E-value: 6.3e-20
                  HHHHTCHHHHHHHHT....T.---HHH.HHHHHHHHHTTS----SSTT-----HHHHHHHHHHHHHHHHHHHHHHHH CS
  Ion_trans_2   2 vlllvlifgaviysleegwe.kwsfld.alYfsfvtltTiGYGdivpetdagrlftivyillGlalfalflavlgkv 76 
                  ++++++ifg+++y + eg e +++ l+ ++Y+++vt+tT+GYGdi+p+t++gr+++ ++il+G++++a+ + ++++ 
   CTQ28633.1 164 IAIVMVIFGSLMYLI-EGPEyGFTTLNaSVYWAIVTITTVGYGDITPHTPLGRILASILILIGYSIIAIPTGLITTH 239
                  78999**********.553338888888****************************************999888765 PP

>> PKD_channel  Polycystin cation channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.1   1.0      0.01        30     205     258 ..      56     107 ..      49     114 .. 0.77
   2 !   24.4   3.4   3.4e-09     1e-05     307     406 ..     128     224 ..     115     241 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.01
                  SHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH CS
  PKD_channel 205 tklslflllievvfvvfvlyfvveeilkirkerasylrsvwnlldlaivvlsvv 258
                  ++++ f+ l ++v  vf l +  + +   +++ ++y+ s+w l+dla ++  +v
   CTQ28633.1  56 DEWHIFVWLELLVTAVFTLEYLLRIA--TWPNPLHYIFSFWGLIDLATILPLYV 107
                  56777777877788888888887754..477779************98876655 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 3.4e-09
                  HHHHGGGGG------------------------HHHHHHHHHHHHHHHHHHSSSS-STTSSHHHHHHHHHHHHTT---HHHHHHH-TTHHHHHHHHHH CS
  PKD_channel 307 lttlkllkvlrfnktlslltktlaralkdvlgfalvivilflayaqlgvllfGtqasnfsnlvksiltlfrlilgdfqytelesgnrvLGpllllalv 404
                  +  l++lk+lrf++ l+++ +++ +a ++++ f   i+i+++ ++ l++l+ G +   f +l  s+    ++++  ++y ++      LG +l ++l+
   CTQ28633.1 128 IRALRILKLLRFMPSLNVFWRAIVSARHQLILFYSFIAIVMVIFGSLMYLIEGPE-YGFTTLNASVYWA-IVTITTVGYGDIT-PHTPLGRILASILI 222
                  6789*************************************************86.579**99999988.6677889999984.34444444444443 PP

                  HH CS
  PKD_channel 405 fl 406
                  ++
   CTQ28633.1 223 LI 224
                  33 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.8     3e-07    0.0009       1      49 []     253     272 ..     238     277 .] 0.59

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3e-07
         DZR   1 CpqCgeelppdarfCseCgtklkavaaedrCpsCgek.vdpearfCpeCG 49 
                 CpqC+                              +   d +arfC++CG
  CTQ28633.1 253 CPQCQ------------------------------QGdHDDNARFCHACG 272
                 55555..............................544555555555554 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.11   3.2e+02      15      19 ..     252     256 ..     249     259 .. 0.74
   2 !   16.1   0.1   2.3e-06    0.0069       9      23 .]     261     275 ..     260     275 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.11
  zinc_ribbon_2  15 FCpyC 19 
                     Cp+C
     CTQ28633.1 252 LCPQC 256
                    68888 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.3e-06
  zinc_ribbon_2   9 lqdnakFCpyCGtpl 23 
                    ++dna+FC  CG+ l
     CTQ28633.1 261 HDDNARFCHACGHAL 275
                    79**********976 PP

>> UPF0547  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   1.0     0.024        73       3       8 ..     253     258 ..     251     259 .. 0.87
   2 ?    9.3   0.6    0.0004       1.2      13      22 ..     264     273 ..     263     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.024
     UPF0547   3 CPeCea 8  
                 CP+C++
  CTQ28633.1 253 CPQCQQ 258
                 ****97 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0004
     UPF0547  13 aaqfCphCGy 22 
                 +a+fC+ CG+
  CTQ28633.1 264 NARFCHACGH 273
                 89*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2013.08
//
Query:       CTQ28634.1  [L=334]
Description: oligopeptide transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-31  109.4   0.0    2.6e-31  109.0   0.0    1.2  1  ABC_tran         ABC transporter
    5.5e-19   68.4   0.1    9.7e-19   67.7   0.1    1.4  1  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
    0.00024   21.4   0.1     0.0027   18.0   0.1    2.3  1  AAA_22           AAA domain
     0.0025   17.3   0.0     0.0045   16.5   0.0    1.4  1  SMC_N            RecF/RecN/SMC N terminal domain
     0.0032   17.3   0.1        1.1    9.0   0.0    2.2  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
  ------ inclusion threshold ------
      0.028   14.2   0.3       0.08   12.7   0.1    1.8  2  PRK              Phosphoribulokinase / Uridine kinase family
      0.029   14.3   0.2      0.055   13.4   0.2    1.4  1  NACHT            NACHT domain
      0.029   14.1   0.0      0.054   13.3   0.0    1.4  1  GlgX_C           Glycogen debranching enzyme C-terminal domai
      0.051   14.0   0.0       0.12   12.8   0.0    1.6  1  AAA              ATPase family associated with various cellul
      0.055   13.4   0.0        0.1   12.5   0.0    1.4  1  RsgA_GTPase      RsgA GTPase
      0.058   13.1   0.1        0.1   12.4   0.1    1.3  1  AAA_29           P-loop containing region of AAA domain
      0.069   13.0   0.1       0.14   12.0   0.1    1.5  1  MobB             Molybdopterin guanine dinucleotide synthesis
      0.073   13.5   0.1       0.11   12.9   0.1    1.5  1  AAA_16           AAA ATPase domain
      0.081   13.0   0.0       0.15   12.1   0.0    1.5  1  MMR_HSR1         50S ribosome-binding GTPase
       0.11   12.9   0.0       0.22   11.9   0.0    1.5  1  RNA_helicase     RNA helicase
       0.12   12.0   0.3       0.45   10.2   0.0    1.9  2  Sigma54_activat  Sigma-54 interaction domain
       0.13   11.6   0.6       0.94    8.8   0.1    2.1  2  TniB             Bacterial TniB protein
       0.18   10.9   0.0       0.27   10.4   0.0    1.3  1  NB-ARC           NB-ARC domain
       0.34    9.5   0.3       0.94    8.0   0.1    1.6  2  AAA_13           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.0   2.7e-34   2.6e-31       2     136 ..      41     192 ..      40     193 .. 0.93

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 2.7e-34
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH...............H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx...............x RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren...............e 80 
                 + v+l l+ege++++vGe+G+GKSt++++++gl+k t G++ + gkdl     +e++ +r+ i++++q+  ++l+p++t++e                e
  CTQ28634.1  41 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGKVAWLGKDLLGmkqEEWRDVRSDIQMIFQDplASLNPRMTIGEIiaeplrtyhpkmprqE 139
                 789********************************************98878799999***********999*********************998777 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  ++++++++ k+gl     + +++ p+++SgGq qr+ +aral+ +pkl+++DEp 
  CTQ28634.1 140 VRDRVKAMMMKVGLLP---NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPV 192
                 7777888888888766...8888889*****************************7 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.1     1e-21   9.7e-19       1      65 []     244     311 ..     244     311 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 1e-21
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd...klekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE g+ +++ ++plHPYTkaL+++vp +d+  +   +++ ++ge ps+ + ++GC+F++RCp a +eC
  CTQ28634.1 244 VELGTYDEVYHNPLHPYTKALMSAVPIPDPDLEktkTIQLLEGELPSPINPPSGCVFRTRCPLAGPEC 311
                 8*****************************99988999****************************** PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   2.9e-06    0.0027      10     129 ..      55     222 ..      48     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.9e-06
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevv....fvtlpsstsskdllrellralglelka.................................. 70 
                 v+GesG+GK+t +r +    ++       + +v+         ++++++d+++++  +++++l +                                  
  CTQ28634.1  55 VVGESGCGKSTFARAIIGLVKAT------DGKVAwlgkDLLGMKQEEWRDVRSDIQMIFQDPLASlnprmtigeiiaeplrtyhpkmprqevrdrvkam 147
                 89****************98542......333335555444445558******************9999999999999998888888777777777777 PP

      AAA_22  71 ...........erlsseellealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvG 129
                            +r   e    ++++   ara    ++l+i DE    l+   ++++++ L +l+   + g++li++ 
  CTQ28634.1 148 mmkvgllpnliNRYPHEFSGGQCQRIGIARALilePKLIICDEPVSaLDvsiQAQVVNLLQQLQR--EMGLSLIFIA 222
                 77777777775444444444777777777777999999999997776888555999999999999..9999999985 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.7e-06    0.0045      27     205 ..      53     231 ..      36     244 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.7e-06
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCC.CCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEE.EETTEEE-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrsekl.sdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgesey.kingkevtkkev 123
                   +vG+ G+GKs +  Ai   +G  +a+  + + l +dl+  ++e+ +  + +++++f+++ ++    +++++i   + +  ++ + k+ ++ev +  v
  CTQ28634.1  53 LGVVGESGCGKSTFARAI---IGLVKATDGKVAWLgKDLLGMKQEEWRDVRSDIQMIFQDPLAS---LNPRMTIGEIIAEPLRTYHpKMPRQEV-RDRV 144
                 569***************...78777777777765378998889999999*********99998...788899998888877744414444444.4679 PP

                 HHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemleka 205
                 + ++ ++g+ ++       ++SgG+ + + +a  + +   +p  l + De  +aLD +  ++v++ll++ + +    +i i+++  ++++ 
  CTQ28634.1 145 KAMMMKVGLLPNlinryphEFSGGQCQRIGIARALIL---EP-KLIICDEPVSALDVSIQAQVVNLLQQLQREmgLSLIFIAHDLAVVKHI 231
                 9999999999999999999*****9988777655433...34.48899********************98887445678888888887776 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0081       7.6       3      22 ..      54      73 ..      53     103 .. 0.84
   2 !    9.0   0.0    0.0011       1.1     231     301 ..     159     227 ..     137     229 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0081
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                +++G  g+GKS++ +a+ +l
  CTQ28634.1 54 GVVGESGCGKSTFARAIIGL 73
                589**************776 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSpll 301
                 ++ ++e+S G+ + ++++ al+  +   +l++ DEp + L+ ++++ ++ ll +l+r  g  +i+  H+  +
  CTQ28634.1 159 NRYPHEFSGGQCQRIGIARALILEP---KLIICDEPVSALDVSIQAQVVNLLQQLQReMGLSLIFIAHDLAV 227
                 5678899999999989999999888...99**********************99999888888888887665 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.2     2e+03     126     146 ..      11      31 ..       3      34 .. 0.79
   2 ?   12.7   0.1   8.5e-05      0.08       2      23 ..      53      74 ..      52      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.2
         PRK 126 vaelldlkiyvdisidlelar 146
                 + e +dlk+  di++  ++ +
  CTQ28634.1  11 LLEIADLKVHFDIKDGKQWFW 31 
                 67899*******999888877 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 8.5e-05
         PRK  2 IgvagsSGaGkttvarklekif 23
                +gv g+SG+Gk+t+ar++  ++
  CTQ28634.1 53 LGVVGESGCGKSTFARAIIGLV 74
                599*************997655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   5.9e-05     0.055       2      26 ..      52      76 ..      51      83 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.9e-05
                CEEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawae 26
                ++ + Ge+G+GK+t+++ ++ + ++
  CTQ28634.1 52 TLGVVGESGCGKSTFARAIIGLVKA 76
                56699**************977765 PP

>> GlgX_C  Glycogen debranching enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.7e-05     0.054       3      50 ..      77     123 ..      75     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.7e-05
      GlgX_C   3 gDgnvqWLnaegqplsaeeWeqgakrlqilLsdrwLitlnateevael 50 
                  Dg+v+WL ++   +++eeW++  + +q+ + d  L  ln    + e+
  CTQ28634.1  77 TDGKVAWLGKDLLGMKQEEWRDVRSDIQMIFQD-PLASLNPRMTIGEI 123
                 6***************************98765.46667766666655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00012      0.12       3      52 ..      55     109 ..      53     124 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
                 EESSTTSSHHHHHHHHHHHHT.....HEEEEEETTTCSSSSTTHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakelg.....vefleisgsellskyvgesekkirelfke 52 
                 ++G  G+GK+++a+a++  ++     v  l  ++  + ++ + +  ++i+++f++
  CTQ28634.1  55 VVGESGCGKSTFARAIIGLVKatdgkVAWLGKDLLGMKQEEWRDVRSDIQMIFQD 109
                 68***************99852222244444444444444666777777777775 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011       0.1      93     125 ..      43      76 ..      17      86 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
                  HHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  93 lkellkd.ktsvlvGqSGvGKStLinallpelel 125
                  ++ +l + +t  +vG+SG GKSt+  a+++  ++
   CTQ28634.1  43 VTLRLYEgETLGVVGESGCGKSTFARAIIGLVKA 76 
                  554454449999*************999886555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00011       0.1      13      46 ..      41      74 ..      38      82 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTllDAiqalL 46
                dg t+++ + ++  ++G+sG GKST+  Ai+ l 
  CTQ28634.1 41 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV 74
                566777775556779**********998887665 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00015      0.14       2      34 ..      53      85 ..      52      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
        MobB  2 lgivgksgsGKTtLleklipelkarglrvgtiK 34
                lg+vg sg+GK t+   +i  +ka + +v+ + 
  CTQ28634.1 53 LGVVGESGCGKSTFARAIIGLVKATDGKVAWLG 85
                89************************9999875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00011      0.11      24      53 ..      50      79 ..      36     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
      AAA_16 24 pelvllsGesGvGKsslvrellralekdgg 53
                +e + ++GesG+GKs+ +r++   +++++g
  CTQ28634.1 50 GETLGVVGESGCGKSTFARAIIGLVKATDG 79
                477889*************99755555544 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00016      0.15       2      22 ..      53      73 ..      52      95 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                 ++vG +  GKSt+ +a++g 
  CTQ28634.1 53 LGVVGESGCGKSTFARAIIGL 73
                689***************995 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00023      0.22       3      21 ..      55      73 ..      53     121 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00023
  RNA_helicase  3 lyGpsgeGKStlakeLaka 21
                  ++G+sg+GKSt+a+ ++  
    CTQ28634.1 55 VVGESGCGKSTFARAIIGL 73
                  78************97644 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00048      0.45      26      49 ..      54      77 ..      34      84 .. 0.80
   2 ?   -1.0   0.0       1.3   1.3e+03      99     120 ..     188     210 ..     164     217 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00048
                     EEECSTTSSHHHHHHHHHHHSTTT CS
  Sigma54_activat 26 litGesGtGKellaraiheaskrk 49
                      ++GesG+GK+++arai    k +
       CTQ28634.1 54 GVVGESGCGKSTFARAIIGLVKAT 77
                     489*************98766655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
                      EET.GGGS-HHHHHHHHHHHHHS CS
  Sigma54_activat  99 LDe.igelplelQekLlrvlqeg 120
                       De ++ l++++Q+++ ++lq+ 
       CTQ28634.1 188 CDEpVSALDVSIQAQVVNLLQQL 210
                      45558899999999999999874 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.3   2.8e+02      38      53 ..      53      68 ..      48      79 .. 0.85
   2 ?    8.8   0.1     0.001      0.94     118     163 ..     181     224 ..     139     235 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.3
        TniB 38 lllvGdsnnGKtmive 53
                l +vG+s +GK++ ++
  CTQ28634.1 53 LGVVGESGCGKSTFAR 68
                669*********9775 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.001
        TniB 118 lkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvGte 163
                 l+++++i DE  ++l   ++ q +++n+l++L++e+ ++++ +  +
  CTQ28634.1 181 LEPKLIICDEPVSAL--DVSIQAQVVNLLQQLQREMGLSLIFIAHD 224
                 7899******99999..6778899****************987655 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00029      0.27      22      43 ..      52      73 ..      36     115 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00029
                EEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 22 vvalvGmgGvGKttlakqilnk 43
                 +++vG  G+GK+t a+ i+  
  CTQ28634.1 52 TLGVVGESGCGKSTFARAIIGL 73
                578**************99765 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.71   6.7e+02      23      50 ..      57      78 ..      55      95 .. 0.76
   2 ?    8.0   0.1     0.001      0.94     524     578 ..     180     232 ..     173     238 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.71
      AAA_13 23 GwNGaGKTtLSrllrslelgetepkfan 50
                G  G GK+t++r++  l       k + 
  CTQ28634.1 57 GESGCGKSTFARAIIGLV------KATD 78
                7789*********98883......3344 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.001
      AAA_13 524 igkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevk 578
                 i + k ++ D PvS LD  ++  v++l+++   ++   + +fi  H l   k ++
  CTQ28634.1 180 ILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ-REMGLSLIFI-AHDLAVVKHIS 232
                 568899***********************997.6777777777.58877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2306.53
//
Query:       CTQ28635.1  [L=337]
Description: oligopeptide transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-28   97.5   0.0    1.2e-27   97.1   0.0    1.2  1  ABC_tran   ABC transporter
    1.4e-21   76.7   0.1    2.7e-21   75.9   0.1    1.5  1  oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal reg
    1.2e-06   28.6   0.5    4.7e-06   26.6   0.0    1.9  2  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
    0.00039   19.9   0.2    0.00093   18.7   0.2    1.5  1  SMC_N      RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.019   14.7   0.2        0.9    9.2   0.0    2.1  2  IstB_IS21  IstB-like ATP binding protein
       0.07   12.9   1.5        0.1   12.3   0.5    1.8  2  AAA_29     P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0     4e-31   1.2e-27       2     136 ..      40     196 ..      39     197 .. 0.88

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 4e-31
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE....EETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx........... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGei....lldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren........... 79 
                 ++++++l++ge+++ivGe+G+GKS  + +l+gll   +G+i    +++g+++ +    +  +   ++i++++q+  ++l+p ++v+e+           
  CTQ28635.1  40 NDLNFTLQAGETLGIVGESGSGKSQTAFALMGLLAA-NGRIggsaTFNGRQILNlperELNKLRAEQISMIFQDpmTSLNPYMRVGEQlmevlmlhkgl 137
                 899******************************986.55555555******9999884444555678*******9999*******************99 PP

                 ...HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                    e+ ee  k+l+ ++++e + +++k  p+++SgG++qrv++a+all++p+ll++DEpt
  CTQ28635.1 138 skaEAFEESVKMLDAVKMPE-ARKRMKMFPHEFSGGMRQRVMIAMALLCRPRLLIADEPT 196
                 88777777888899999999.666678999*****************************9 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.1     9e-25   2.7e-21       1      65 []     248     312 ..     248     312 .. 0.99

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 9e-25
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekdklekikgeapslerldeGCpFapRCpfaleeC 65 
                 +E+g+++++f +p HPY+++Ll++vprld+e d+l +i+g++p+l rl++GCpF+pRCp+a+e+C
  CTQ28635.1 248 MEYGQARDVFYQPSHPYSIGLLNAVPRLDAEGDALLTIPGNPPNLLRLPKGCPFQPRCPHAMEQC 312
                 7**************************************************************** PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.26   7.9e+02       3      13 ..      53      63 ..      52      85 .. 0.90
   2 !   26.6   0.0   1.6e-09   4.7e-06     234     302 ..     166     232 ..      82     233 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.26
      AAA_21  3 vliGpNgsGKS 13
                +++G  gsGKS
  CTQ28635.1 53 GIVGESGSGKS 63
                69********9 PP

  == domain 2  score: 26.6 bits;  conditional E-value: 1.6e-09
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                 ++e+S G+++   ++ all ++   +ll+ DEp + L+  +++ +++ll+el+r  ++ +i+ TH+  ++
  CTQ28635.1 166 PHEFSGGMRQRVMIAMALLCRP---RLLIADEPTTALDVTVQAQIMTLLNELKReFNTAIIMITHDLGVV 232
                 3567******978888888777...9***********************99999899*********8876 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   3.1e-07   0.00093      28     208 ..      53     239 ..      43     249 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.1e-07
                 EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCC..CCC--.BTTCSSTTEEEEEEEEEETTEE....SSSSSSCEEEEEEEETTSEEEEEETTEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx.xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersakklrsekls..dlihk.skekasvkkaeveitfdnedkk....lkiekeevsisrrvkrkgeseykingkevt 119
                  ivG+ GSGKs    A++ +L   + +   s++++  ++++  ++e +++   +++++f+++  +    +  +  e  +++ + +kg s+ +  +++v+
  CTQ28635.1  53 GIVGESGSGKSQTAFALMGLLAA-NGRIGGSATFNgrQILNLpERELNKLRAEQISMIFQDPMTSlnpyM--RVGEQLMEVLMLHKGLSKAEAFEESVK 148
                 69***************988885.443333333322134443445667777778*****99888855433..344444455555555555555555555 PP

                 H...HHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-.SCE CS
                 x...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xxx RF
       SMC_N 120 k...kevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemleka.dkl 208
                      ++ e  +++++ ++++SgG ++ v++a+ +    ++p+ l + De   aLD +  +++ +ll+e + +  + +i+i+++ ++++   dk+
  CTQ28635.1 149 MldaVKMPEARKRMKMFPHEFSGGMRQRVMIAMAL---LCRPR-LLIADEPTTALDVTVQAQIMTLLNELKREfnTAIIMITHDLGVVAGIcDKV 239
                 51115556677889999*******77766666553...37776.7789********************887763367888888877776554555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0003       0.9      33      68 ..      34      70 ..       8      85 .. 0.78
   2 ?    3.3   0.0      0.02        60     100     149 ..     178     229 ..     171     234 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0003
   IstB_IS21 33 rkvkeLatlsf.iekkenivllGpsGvGKshlaialg 68
                  v+++  l+f +++ e + ++G sG GKs  a al 
  CTQ28635.1 34 GDVTAVNDLNFtLQAGETLGIVGESGSGKSQTAFALM 70
                5566777777734678999***************984 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.02
   IstB_IS21 100 aralkrllkvdllilDd..lgllpldqaeaellfeviekryerrsiiitsnl 149
                   a++ l +++lli D+   +l    qa+  +l++ +++ ++++ i+it +l
  CTQ28635.1 178 MIAMALLCRPRLLIADEptTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 229
                 556778999*******943455566788889999999999********9876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   3.4e-05       0.1      18      50 ..      45      77 ..      37      87 .. 0.74
   2 ?   -2.9   0.0       1.9   5.7e+03      41      57 ..     205     221 ..     203     221 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.4e-05
      AAA_29 18 eidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                +++  ++  ++G+sGsGKS    A++ lL ++ 
  CTQ28635.1 45 TLQAGETLGIVGESGSGKSQTAFALMGLLAANG 77
                455334667**********77779999998886 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.9
      AAA_29  41 AiqalLvpakkvrfNka 57 
                 A+++ L+ + k++fN a
  CTQ28635.1 205 AQIMTLLNELKREFNTA 221
                 55566667778999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 2560.40
//
Query:       CTQ28636.1  [L=302]
Description: oligopeptide transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.8e-26   90.6   9.4    9.8e-26   90.6   9.4    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne
      2e-13   50.1   0.4      2e-13   50.1   0.4    3.3  4  OppC_N        N-terminal TM domain of oligopeptide transport 


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   3.1     0.079   7.1e+02     118     168 ..      40     119 ..      33     123 .. 0.62
   2 !   90.6   9.4   1.1e-29   9.8e-26       1     182 [.     119     300 ..     119     302 .] 0.98

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.079
  BPD_transp_1 118 fggllggavlleflgswpGlgtllleailgydyseis..................................nggvlalviavlll 168
                   +++l+   ++++f++       +++++ +++d+++++                                  ++gv+a+++av+l 
    CTQ28636.1  40 VTSLIMLVLIALFVT-----FAPMVSSFSYFDTDWGMmsnapdmasghyfgtdssgrdllvrvaiggrislMVGVAAALVAVILG 119
                   444555555555555.....66677777777777776777777777777777777777777777776666655666666666665 PP

  == domain 2  score: 90.6 bits;  conditional E-value: 1.1e-29
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g+l G+l++ + ++k+d ++++l ++l s+P++ ++illv      + +g+ il   ++++++s++ ++r++r + l+   k+++eaa + G+s+  
    CTQ28636.1 119 GTLYGSLSG-YLGGKVDSVMMRLLEILNSFPFMFFVILLV------TFFGQNILLiFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTAS 208
                   677899***.******************************......*********88**************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqrlldpr 182
                   i+ ++++Pn+l +++  + l +++++   ++l+flg    lgt+   +++g  +s ++           +++ +lv+ ++ +n++ d l ++ldp+
    CTQ28636.1 209 IVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLG----LGTQEPLSSWGALLSDGAnsmevspwllLFPAGFLVVTLFCFNFIGDGLRDALDPK 300
                   ************************************....*****************9**********9*************************97 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.4   2.2e-17     2e-13       1      50 [.      24      76 ..      24      77 .. 0.92
   2 ?   -2.8   0.6      0.76   6.8e+03      24      32 ..     109     117 ..     102     125 .. 0.50
   3 ?   -2.4   3.7      0.54   4.9e+03      21      35 ..     149     163 ..     149     174 .. 0.76
   4 ?   -3.4   0.2       1.1   9.8e+03      21      33 ..     278     290 ..     276     293 .. 0.59

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 2.2e-17
      OppC_N  1 slwqdawrrFkrNklAvvglvilllllliaifaPliaPydp..qdli.qnllp 50
                slwqda rrF  N++Av +l++l+l++l++ faP+++ +++  +d+  + ++p
  CTQ28636.1 24 SLWQDARRRFMHNRAAVTSLIMLVLIALFVTFAPMVSSFSYfdTDWGmMSNAP 76
                8************************************9999988887555776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.76
      OppC_N  24 llllliaif 32 
                 ++ +l+a++
  CTQ28636.1 109 VAAALVAVI 117
                 333444433 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.54
      OppC_N  21 villlllliaifaPl 35 
                 +++ ++ll+ +f+  
  CTQ28636.1 149 FMFFVILLVTFFGQN 163
                 567778888888754 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 1.1
      OppC_N  21 villlllliaifa 33 
                 +++++l+ + +++
  CTQ28636.1 278 FLVVTLFCFNFIG 290
                 5566666665655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       912  (0.0508673); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2265.82
//
Query:       CTQ28637.1  [L=306]
Description: oligopeptide transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-39  133.5  18.7    7.1e-39  133.5  18.7    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        7.4    6.1   8.7        1.4    8.4   1.2    2.5  2  BCLP          Beta-casein like protein


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.12   1.1e+03      23      41 ..       9      24 ..       2      71 .. 0.66
   2 !  133.5  18.7   7.9e-43   7.1e-39       1     185 []     112     306 .]     112     306 .] 0.99

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.12
  BPD_transp_1 23 liivllslPsfvlaillvl 41
                  + +   ++P++ ++i + +
    CTQ28637.1  9 CLE---AIPTLFILITISF 24
                  444...4444443333321 PP

  == domain 2  score: 133.5 bits;  conditional E-value: 7.9e-43
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf...........vilsilghlilpviillllsaapyvrlirraalrslpkdlvea 86 
                   g+ +G++aal++n ++d++++++  ++  +Psfv+a+llv++f            + ++l+++ilp+++l+l ++a ++r++r +++++l ++++++
    CTQ28637.1 112 GVAAGVIAALKQNTRWDYAVMGVAMTGVVIPSFVVAPLLVMIFaitlhwlpgggWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRT 208
                   799**************************************************98889999************************************ PP

  BPD_transp_1  87 aralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   ara+G++ ++i+ +++l+ al p+++ ++ af+g+++g++++e++ + pG+g+l+++  l++dys+ +  +++ ++++++l+n+++d+l++++dp++
    CTQ28637.1 209 ARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL-SLTILVGALTILFNAIVDVLYAVIDPKI 304
                   ********************************************************************.***************************9 PP

  BPD_transp_1 184 rk 185
                   r+
    CTQ28637.1 305 RY 306
                   95 PP

>> BCLP  Beta-casein like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.2   0.00015       1.4      35     100 ..      89     154 ..      81     160 .. 0.87
   2 ?    1.3   1.1     0.024   2.2e+02       7      55 ..     197     250 ..     194     301 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00015
        BCLP  35 avtleyavsnviavvsgllsiisGivaivlsrnlknkklqwallvlsllaallsaacavgLlvavv 100
                  v+ ++ vs  +  ++ ll++++G++a v++  ++n++  +a++ ++++  ++  + +  Llv + 
  CTQ28637.1  89 LVAASFPVSAKLGFAAFLLAVVIGVAAGVIAALKQNTRWDYAVMGVAMTGVVIPSFVVAPLLVMIF 154
                 567788999999999**********************************99999888888887764 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.024
        BCLP   7 lilvGHvnfllgalvhG.....avlrhvskkkkavtleyavsnviavvsgllsi 55 
                 +i v H nf+ +a  +G     ++lrh  k+     l+y+    + +++g + i
  CTQ28637.1 197 MIEVLHSNFIRTARAKGlpmrrIILRHALKPALLPVLSYMGPAFVGIITGSMVI 250
                 677889999999998883322235556555555556666665555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2254.01
//
Query:       CTQ28638.1  [L=544]
Description: oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-86  288.6   9.1    8.6e-86  288.2   9.1    1.2  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.2   9.1   4.8e-90   8.6e-86       2     376 ..      83     464 ..      82     465 .. 0.94

  Alignments for each domain:
  == domain 1  score: 288.2 bits;  conditional E-value: 4.8e-90
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHC..............TCTEEEEEEEETTEEEEEESSET CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyasllee..............dqdikkveavddytvrftlkkpn 86 
                 ++p++Aes w+ ++D k++tf+LRk++k+s+G+p+tA+D+v+s++rl+dp+tas+yas+ ++                +  +v+a+dd+t+++tl++p 
  CTQ28638.1  83 PIPGVAES-WD-NKDFKVWTFHLRKDAKWSNGEPVTAQDFVYSWQRLVDPKTASPYASYPQYghivnvdeiidgkkAPSELGVKAIDDHTLEVTLSEPV 179
                 68******.57.***********************************************999************************************* PP

                 TTTTTHCHHHHHHHGCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHH.HTTSSSEEESTTCC CS
   SBP_bac_5  87 alfltllaavpasiakkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaal.qsGeiddvaeppps 184
                 ++f+ ll +++ s++ k a ++  ++++ + + v++G+Y+lk+++ +++iv+ernp+Yw++ k  ++ +++    +s+++ ++  +sGe+ d+++ +++
  CTQ28638.1 180 PYFYKLLVNPAMSPVYKPAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVMERNPHYWDNAKTVINTVTWLPT-SSEVTYVNRyRSGEL-DMTYNQLP 276
                 ****************999999999*************************************************.8888888888*****.88788888 PP

                 THCHHHHHTTEEE.EEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHH....SHHHHHHHH CS
   SBP_bac_5 185 dieqlkeakglkv.lyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpayka....ydpekAkkl 278
                     +k +k +++ l+ +p++ ++y+ +N++k+pf d+rvR Al + +Dr+ i+++v + +  pa++++pp  +ga+ + ++ + +       e+Akkl
  CTQ28638.1 277 IELFQKLKKEIPNeLHVDPYLCTYYYEINNQKAPFTDVRVRTALKLGLDRDIIANKVKGQGDLPAYGYTPPYTDGAKLSEPEWF-TwsqeKRNEEAKKL 374
                 888888888888888******************************************999999*******99999876655533.36888667****** PP

                 HHHTT-BCSSTSCEETCEEEEEEEEETTSHHHHHHHHHHHHHHHH.TTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTTCTT CS
   SBP_bac_5 279 LkeaGykdgdggglrekklkltlllasgspaekaiaeliqqqlkk.iGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsssgag 376
                 L+eaGy  ++        ++++ ll+++s ++k++a + ++ ++k +Gi+v++ + +w +t+l+++++g++d++  gw ady +p +fln++ls+s+++
  CTQ28638.1 375 LAEAGYSADK--------PLTFNLLYNTSDLHKKLAIAAASLWRKnLGIDVKLVNQEW-KTFLDTRHQGTYDVARAGWCADYNEPTSFLNTMLSDSSMN 464
                 ********97........568899999999999*************************.***********************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4117.89
//
Query:       CTQ28639.1  [L=215]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-75  250.8  10.7    8.5e-75  250.6  10.7    1.0  1  MarC          MarC family integral membrane protein
  ------ inclusion threshold ------
          1    8.8   5.4        0.9    9.0   0.2    2.1  2  DUF3087       Protein of unknown function (DUF3087)
          1    9.1   4.0        1.3    8.7   0.5    2.3  2  Trp_oprn_chp  Tryptophan-associated transmembrane protein (Tr
        5.1    7.2  14.4          4    7.6   1.7    3.1  3  YrvL          Regulatory protein YrvL
          8    7.0  10.9         14    6.3   1.2    3.0  2  PNTB_4TM      4TM region of pyridine nucleotide transhydrogen


Domain annotation for each model (and alignments):
>> MarC  MarC family integral membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.6  10.7   2.4e-78   8.5e-75       1     203 []       8     210 ..       8     210 .. 0.99

  Alignments for each domain:
  == domain 1  score: 250.6 bits;  conditional E-value: 2.4e-78
        MarC   1 lkaiikafvsLlaiinplgnvpvflslleevskeerkrialkasilallillvfllfGelilklfgisidalkiaGgillfliaidmlkakqkkekkkk 99 
                 ++a++k+f+ L+a++np+g++pvf+s++++++++ r++++l+a++++++ill +l++G+ il++fgisid+++iaGgil+++ia++m+++k  ++k++k
  CTQ28639.1   8 FSAYFKFFIGLFALVNPVGIIPVFISMTSYQPAAVRNKTNLTANLSVAIILLTSLFLGDGILQIFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNK 106
                 679************************************************************************************************ PP

        MarC 100 seeeeseekdeiavvPLAlPliaGPgaittvlvlaseassivekvavvlaillaalitllilllsslilrllgktginaleRlmGllLvalavqlivdG 198
                 +e++e++ +++i vvPLAlPl+aGPgai++++v+ ++++s+v+ v + lai+++al++++i++++++++rllg+tgin+++R+mGllL+al++++iv+G
  CTQ28639.1 107 QEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSWVHLVGFSLAIAVFALCCWGIFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTG 205
                 *************************************************************************************************** PP

        MarC 199 ikeil 203
                 ik ++
  CTQ28639.1 206 IKALF 210
                 *9875 PP

>> DUF3087  Protein of unknown function (DUF3087)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2   0.00025       0.9       4      64 ..      35      93 ..      32     106 .. 0.77
   2 ?    2.0   1.2     0.036   1.3e+02      21      71 ..     157     207 ..     142     209 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00025
     DUF3087  4 qeidkerYrkklnrvivalvallavlsllfstllialfgeeevsnfhlnllGvvlalvlta 64
                ++ +++  r+k+n      va+++++sl ++  ++++fg  ++++f++   G+++ ++ ++
  CTQ28639.1 35 TSYQPAAVRNKTNLTANLSVAIILLTSLFLGDGILQIFG-ISIDSFRI-AGGILVVTIAMS 93
                56778899*******************************.45667765.344444444444 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.036
     DUF3087  21 alvallavls.llfstllialfgeeevsnfhlnllGvvlalvltaailrklk 71 
                 + v +l + + + ++  l+ l+g++++ n+   ++G +l ++ + +i+  +k
  CTQ28639.1 157 IAVFALCCWGiFRMAPWLVRLLGQTGI-NVITRIMGLLLMALGIEFIVTGIK 207
                 344445554414578999*****9988.99999***9999999988887665 PP

>> Trp_oprn_chp  Tryptophan-associated transmembrane protein (Trp_oprn_chp)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.5   0.00037       1.3       6      84 ..      81     160 ..      78     166 .. 0.82
   2 ?    1.0   0.1      0.09   3.2e+02      66      89 ..     186     209 ..     182     213 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00037
  Trp_oprn_chp   6 lgAallllasrltWvtvtvsdalggprtvalsGadwapaltalAlvllAaavAvlavrglgrrvvgvllal.agagaava 84 
                   +++++l+++ ++  +++++ ++++++++ + +  + +  +++lAl l+A+  A+  +  +g r  + + ++  ++++av 
    CTQ28639.1  81 IAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSWVHLVgFSLAIAVF 160
                   577888999999999999999999999999999999999**********************9998887543134444444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.09
  Trp_oprn_chp  66 grrvvgvllalagagaavaalsll 89 
                   + r++g+ll+++g+  +v+++++l
    CTQ28639.1 186 ITRIMGLLLMALGIEFIVTGIKAL 209
                   6799**********9999999876 PP

>> YrvL  Regulatory protein YrvL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.69   2.5e+03      23      30 ..      14      21 ..       8      50 .. 0.54
   2 ?    7.6   1.7    0.0011         4      11      38 ..      52      79 ..      44      96 .. 0.85
   3 ?    7.5   1.1    0.0012       4.2      31      65 ..     140     174 ..     135     208 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.69
        YrvL 23 vvvglfkl 30
                +++glf+l
  CTQ28639.1 14 FFIGLFAL 21
                33333333 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0011
        YrvL 11 lvliivfaifflvvvglfkllGieYeSv 38
                l ++i++ + ++++ g+++++Gi+ +S 
  CTQ28639.1 52 LSVAIILLTSLFLGDGILQIFGISIDSF 79
                67899999***************98886 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0012
        YrvL  31 lGieYeSvgslllFfliflvlglllellakillkv 65 
                  G++Y S+ +l+ F l++ v  l++  ++++ + +
  CTQ28639.1 140 WGTRYHSWVHLVGFSLAIAVFALCCWGIFRMAPWL 174
                 69****************99999887666554444 PP

>> PNTB_4TM  4TM region of pyridine nucleotide transhydrogenase, mitoch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   2.7     0.012        43      37      79 ..      55      94 ..      16      96 .. 0.76
   2 ?    6.3   1.2    0.0038        14      23      51 ..     123     151 ..     116     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.012
    PNTB_4TM 37 iiivgallalgstlakvlgaiavvlasinvvGGFlvtqrmLkm 79
                 ii+ + l lg     +l+++++ ++s+ ++GG lv +  ++m
  CTQ28639.1 55 AIILLTSLFLG---DGILQIFGISIDSFRIAGGILVVTIAMSM 94
                22222222222...569*****************998777766 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0038
    PNTB_4TM  23 LhtPLmsvtnaisgiiivgallalgstla 51 
                 L  PLm++  ais++i+ g+ +    +l+
  CTQ28639.1 123 LALPLMAGPGAISSTIVWGTRYHSWVHLV 151
                 556**************998666553333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1685.23
//
Query:       CTQ28640.1  [L=71]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      189  (0.0105416); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 533.07
//
Query:       CTQ28641.1  [L=891]
Description: fused acetaldehyde-CoA dehydrogenase; iron-dependent alcohol dehydrogenase; pyruvate-formate lyase deactivase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.7e-114  380.3   0.3   1.2e-113  379.7   0.3    1.3  1  Fe-ADH         Iron-containing alcohol dehydrogenase
    1.1e-28  100.0   3.4    1.5e-27   96.2   3.4    2.0  1  Aldedh         Aldehyde dehydrogenase family
    1.2e-15   57.9   1.0    2.4e-06   27.4   1.2    2.6  2  Fe-ADH_2       Iron-containing alcohol dehydrogenase
  ------ inclusion threshold ------
      0.066   13.1   0.5       0.36   10.7   0.0    2.4  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
        6.3    7.7   6.9        4.3    8.3   0.0    3.5  4  DUF3235        Protein of unknown function (DUF3235)


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.7   0.3  3.3e-117  1.2e-113       1     360 [.     457     850 ..     457     854 .. 0.94

  Alignments for each domain:
  == domain 1  score: 379.7 bits;  conditional E-value: 3.3e-117
                 -SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHH CS
      Fe-ADH   1 PtrivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKa 99 
                 P+ i+f +g+l    +++   g+kralivtd++++ ++g++d++++ l++ag+e +vf +ve +ptl+ v+++a+la+++++dv+ia+GGGs++D+AK+
  CTQ28641.1 457 PKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLF-NNGYADQITSVLKAAGVETEVFFEVEADPTLTIVRKGADLANSFKPDVIIALGGGSPMDAAKI 554
                 889*********999999999************99.*************************************************************** PP

                 HHHHTT.............................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHH CS
      Fe-ADH 100 ialllanpe..vedyl........gegkakkkka.lpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglD 187
                 +++++++pe  +e++         ++ k +k    ++++ai Tt+GtGsevtp+av+td+++g+k++++d+ l+Pd+aivD +l++++Pk++ a++glD
  CTQ28641.1 555 MWVMYEHPEthFEELAlrfmdirkRIYKFPKMGVkAKMVAITTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLD 653
                 *******955955555555576565555433333599************************************************************** PP

                 HHHHHHHHHHHHT---TTSSB--HHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH... CS
      Fe-ADH 188 alahalEayvskkanplsdalaleairliaknleravadge.dleareqmllastlaglafsnaglgavHalahalgalfgiphglanaillpavlrfn 285
                 a++halEayvs  a+++sd+ al+a++l+ ++l+ ++++g+ ++ are+++ a+t+ag+af+na lg++H++ah+lg++f+iphglana+l   v+r+n
  CTQ28641.1 654 AVTHALEAYVSVLASEFSDGQALQALKLLKEYLPASYHEGSkNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYN 752
                 ****************************************88********************************************************* PP

                 ......................HHHHHHT...........T--HHHHHHHHHHHHHTT---SHHHHT-TT-HH....HHHHHHHT-TSGGGGSSS--- CS
      Fe-ADH 286 a...............eaaperlaqlaralgge....sdeeaaeeliealrellkelglptsLselgvdeedl....dklaeaalkdrslannprelt 360
                 a               ++a++r+a++a+ lg       ++++ e+l+++l+ + +elg+p+s++e gv+e+d+    dkl+e+a++d+++++npr + 
  CTQ28641.1 753 AndnptkqtafsqydrPQARRRYAEIADHLGLSapgdRTAAKIEKLLAWLESIKAELGIPKSIREAGVQEADFlahvDKLSEDAFDDQCTGANPRYPL 850
                 ***************99999************9**999999*****************************8777888*****************9875 PP

>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   3.4   4.3e-31   1.5e-27      28     426 ..       6     399 ..       1     406 [. 0.76

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 4.3e-31
                 HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEECTTEEEEEEEEE CS
      Aldedh  28 aedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaeklegevlpssegklalvrreP 126
                  ++++a v++ k+a++++a+ + e+  +i+r+aa + ++ +  la++ ++e G  + e +   +  ++ + y a   ek  g vl+ +++  +++  eP
  CTQ28641.1   6 IAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCG-VLSEDDTFGTITIAEP 103
                 578999***************************************************9999766666666666666666555.5666789********* PP

                 -SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT....TS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHHHHHH CS
      Aldedh 127 lGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea....glPkgvlnvvtgsgsevgealvehpevdkvsftGstevgrki 221
                 +G++  I+P   P ++a+ k ++ l + N++++ P +++   + + a ++ +a    g Pk+++  +  +  e+++al++hp+++++  tG+  + +  
  CTQ28641.1 104 IGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAaiaaGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAA 202
                 **********************************98877776666666665555555**********************************98776665 PP

                 HHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TTS.......TT-SB---SS CS
      Aldedh 222 akaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpld.......edtdvGPlis 313
                 ++    + k+ +    G+ p+++ e aD+++av++++++ ++ +G +C + + ++v +s+yd+++e+++ +   l +g++l+       ++  + + i 
  CTQ28641.1 203 YS----SGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYLLQGKELKavqdiilKNGALNAAIV 297
                 55....4689999999*****************************************************999888888887722222222222222222 PP

                 HHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSS....SEESEEEEE-SBHH. CS
      Aldedh 314 eaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdt....eyGLaagvftkdle. 407
                  + ++k+ ++   ++ +  k+l+G                  ++nv+++ + a +E   P l+++++kd+e+a+++a +       G +++++t++ + 
  CTQ28641.1 298 GQPAAKIAELAGFTVPATTKILIGE-----------------VTNVDESEPFA-HEKLSPTLAMYRAKDFEDAVAKAEKLvamgGIGHTSCLYTDQDNq 378
                 2222222222222222222222222.................45555555544.455678888888888888888888752222468888888865441 PP

                 ..HHHHHHHHS-SSEEEESSS CS
      Aldedh 408 ..raervaerleaGnvyiNds 426
                   r+ ++ + +++  + iN++
  CTQ28641.1 379 paRVAYFGQMMKTARILINTP 399
                 115566667777777777776 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   7.2e-10   2.6e-06      18      94 ..     478     555 ..     463     562 .. 0.90
   2 !   27.4   1.2   6.7e-10   2.4e-06      99     246 ..     589     738 ..     580     741 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 7.2e-10
    Fe-ADH_2  18 elkkvllvadentkka.agekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyv 94 
                 + k++l+v+d+   +  +++++++ lk ag+++ev+ eve++++l+ v+k ++ +++ + d+++a+GgG+ +D+ak++
  CTQ28641.1 478 GHKRALIVTDRFLFNNgYADQITSVLKAAGVETEVFFEVEADPTLTIVRKGADLANSFKPDVIIALGGGSPMDAAKIM 555
                 56899******9655549****************999***************************************97 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 6.7e-10
    Fe-ADH_2  99 nvpyvsvpTaaSvDGfaspgaslvvd..gkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaamvqeaae 194
                 + ++v++ T+    +   p+a ++ d  g+k  +   a +P   i+D +++ + P++l a G  D++      + + la+e+s+  a+++ + ++e + 
  CTQ28641.1 589 KAKMVAITTTSGTGSEVTPFAVVTDDatGQKYPLaDYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKEYLP 687
                 6789999999888888999999999988999999888999999*******************************************************9 PP

    Fe-ADH_2 195 klved.kketealeellealalsgigisrpaSGsEHliSHaldmlalkqalHG 246
                 +  ++  k+  a e++ +a +++gi+++++  G +H ++H l   +  +  HG
  CTQ28641.1 688 ASYHEgSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQF--HIPHG 738
                 999862557889999****************************999..88998 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.56     2e+03      14      24 ..      43      53 ..      40      55 .. 0.87
   2 ?   10.7   0.0    0.0001      0.36      16      32 ..     771     787 ..     765     792 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.56
  HTH_AsnC-type 14 edaRisyaeLA 24
                   +daRi+ a++A
     CTQ28641.1 43 ADARIPLAKMA 53
                   79*****9988 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0001
  HTH_AsnC-type  16 aRisyaeLAervGlSes 32 
                    aR+ yae+A+ +GlS++
     CTQ28641.1 771 ARRRYAEIADHLGLSAP 787
                    9**************96 PP

>> DUF3235  Protein of unknown function (DUF3235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.5      0.21   7.7e+02      18      57 ..       7      45 ..       2      63 .. 0.75
   2 ?   -2.9   0.3       3.6   1.3e+04       6      33 ..     138     165 ..     137     168 .. 0.71
   3 ?    8.3   0.0    0.0012       4.3      34      58 ..     246     270 ..     223     274 .. 0.87
   4 ?   -3.1   0.0       4.3   1.5e+04       4      13 ..     785     794 ..     784     837 .. 0.61

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.21
                HHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHTT CS
     DUF3235 18 ApvaaaaataqkavadlaatsdelavDavydalkdalaka 57
                A+  a +++++ka ++ a+ ++  +vD+++ a   a+a a
  CTQ28641.1  7 AELNALVERVKKAQREYASFTQ-EQVDKIFRAAALAAADA 45
                7778889999997777777665.47999998866666554 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.6
                 --HHHHTTT.S-HHHHHHHHHHHHHHHH CS
     DUF3235   6 PtpRdaaaaqapApvaaaaataqkavad 33 
                 P pR   a++++A+   +aa a+ a++d
  CTQ28641.1 138 PHPRAKEATNKAADIVLQAAIAAGAPKD 165
                 6788888887888877777777766665 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0012
                 HT--HHHHHHHHHHHHHHHHHHTTT CS
     DUF3235  34 laatsdelavDavydalkdalakaG 58 
                  a++++++ vD vyda+++++a  G
  CTQ28641.1 246 CASEQSVVVVDSVYDAVRERFASHG 270
                 58999****************9988 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 4.3
                 TS--HHHHTT CS
     DUF3235   4 SAPtpRdaaa 13 
                 SAP  R+aa 
  CTQ28641.1 785 SAPGDRTAAK 794
                 7888888653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (891 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.40
# Mc/sec: 6622.61
//
Query:       CTQ28642.1  [L=175]
Description: thymidine kinase/deoxyuridine kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-51  173.5   0.0    4.2e-51  173.3   0.0    1.0  1  TK        Thymidine kinase
  ------ inclusion threshold ------
       0.06   13.6   0.0      0.086   13.1   0.0    1.2  1  AAA_22    AAA domain


Domain annotation for each model (and alignments):
>> TK  Thymidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.3   0.0   4.7e-55   4.2e-51      30     177 .]       1     156 [.       1     156 [. 0.99

  Alignments for each domain:
  == domain 1  score: 173.3 bits;  conditional E-value: 4.7e-55
          TK  30 kkvvvikaakdnRysegkvvthdgisleak..ksktssleeikeeleeedvdvvlvDEaqFfe.qdivelseklanegkivivagLdtdFerklFenil 125
                 +++vv++a++d+R+++gkv++++g+s  a+  + +ts +++i +e++ + +++vlvDE+qF++ ++++else++++ +++v+++gL+tdF+++lF++++
  CTQ28642.1   1 MRTVVYTAEIDDRFGAGKVSSRIGLSSPARlyNPQTSLFDDIAAEHQLKPIHCVLVDESQFLTrEQVHELSEVVDTLDIPVLCYGLRTDFRGELFTGSQ 99 
                 689**************************998899**************************************************************** PP

          TK 126 kllalaekvkklkavCmkCgkkAsftkrln......kekeviliGgkekYvsvCrkcy 177
                 +lla+++k+++lk++C +Cg+kAs++ rl+      +e+e+++iGg+e+YvsvCrk+y
  CTQ28642.1 100 YLLAWSDKLVELKTIC-FCGRKASMVLRLDqegrpyNEGEQVVIGGNERYVSVCRKHY 156
                 ****************.****************************************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.6e-06     0.086      88     129 ..      45      85 ..      12      93 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.6e-06
      AAA_22  88 arav..ielliiDEaqhlrseealeeLrsllnlsrkgvqliLvG 129
                 +++   i+++++DE q+l + e++ eL++ ++  + +++++  G
  CTQ28642.1  45 EHQLkpIHCVLVDESQFL-TREQVHELSEVVD--TLDIPVLCYG 85 
                 33335789**********.**********999..9888887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1443.05
//
Query:       CTQ28643.1  [L=135]
Description: global nucleic acid-binding transcriptional dual regulator H-NS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-20   73.0   4.4    2.6e-20   73.0   4.4    1.9  2  Histone_HNS  H-NS histone family
     0.0032   17.9   0.6     0.0041   17.6   0.6    1.3  1  DUF3037      Protein of unknown function (DUF3037)
  ------ inclusion threshold ------
      0.026   14.8   0.9      0.037   14.3   0.9    1.3  1  TetR_C_24    Tetracyclin repressor-like, C-terminal domain
      0.034   14.4   0.0      0.046   14.0   0.0    1.3  1  PaaX_C       PaaX-like protein C-terminal domain


Domain annotation for each model (and alignments):
>> Histone_HNS  H-NS histone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2     0.031   1.4e+02      12      40 ..      10      38 ..       3      42 .. 0.71
   2 !   73.0   4.4   5.9e-24   2.6e-20       1      91 [.      32     127 ..      32     128 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.031
                 XXXXXXXXXXXXXXXXXXXXXXXXX---- CS
  Histone_HNS 12 qeealeaeerkealaeirelaaeyGltle 40
                  + +l+a++r+  l++++e++++  + ++
   CTQ28643.1 10 NIRTLRAQARECTLETLEEMLEKLEVVVN 38
                 45667888888888888888887776655 PP

  == domain 2  score: 73.0 bits;  conditional E-value: 5.9e-24
                  XXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX----SSS--..---EEEEE.......---T..TT-SSS.-EEEEES----HHHHHHH... CS
  Histone_HNS   1 eLkalieelekqeea..leaeerkealaeirelaaeyGltleelaae..akkakkkkakakk..vpaK..YrdpetegetWsGrGrkPkwlkaalaag 90 
                  +L+ +++e++++e+a  +e eer+++l+++re++ ++G++++el+++  a   k+ + k+k+  +paK  Y+d+++e +tW+G+Gr+P+++k+a+++ 
   CTQ28643.1  32 KLEVVVNERREEENAaaAEIEERTRKLQQYREMLIADGIDPNELLSTmaA--VKAGT-KTKRaaRPAKysYVDENGETKTWTGQGRTPAVIKKAMDEQ 126
                  5777888888888886679*************************888542..33222.2222349***99*************************986 PP

                  . CS
  Histone_HNS  91 k 91 
                  +
   CTQ28643.1 127 G 127
                  5 PP

>> DUF3037  Protein of unknown function (DUF3037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.6     9e-07    0.0041      37      93 ..      10      66 ..       3      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9e-07
     DUF3037 37 deaRlralfpeldlealeeelkaleeicegekaagpiakldlaerfrwltaprstvi 93
                + + lra + e+ le+lee+l++le +++++++++++a  +++er+r+l++ r+ +i
  CTQ28643.1 10 NIRTLRAQARECTLETLEEMLEKLEVVVNERREEENAAAAEIEERTRKLQQYREMLI 66
                455678888999*********************999****************99877 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.9   8.2e-06     0.037      13      68 ..      20      75 ..       9      86 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.2e-06
                HHHHHHHHHTHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB CS
   TetR_C_24 13 rahveviaeereeaavllrelraLspehreeiralrreyerllrdlieeGvaagef 68
                ++ +e++ e  e+  v+++e+r  + ++++ei ++ r++++  + li++G++  e+
  CTQ28643.1 20 ECTLETLEEMLEKLEVVVNERREEENAAAAEIEERTRKLQQYREMLIADGIDPNEL 75
                67788888999999*************************************98887 PP

>> PaaX_C  PaaX-like protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     1e-05     0.046      17      70 ..      25      77 ..      15     102 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1e-05
      PaaX_C 17 kYeeflaeyrpllkellekeelapeeaFlvrtlllheyrkllfrDPgLPeellp 70
                + ee+l++++ +++e++e+e++a++e   +rt+ l++yr++l  D   P+ell 
  CTQ28643.1 25 TLEEMLEKLEVVVNERREEENAAAAE-IEERTRKLQQYREMLIADGIDPNELLS 77
                55789999999999999988855555.799**********************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1621  (0.0904122); expected 358.6 (0.02)
Passed bias filter:                      857  (0.0477997); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1096.45
//
Query:       CTQ28644.1  [L=300]
Description: glucose-1-phosphate uridylyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-26   93.3   0.0    2.2e-26   93.0   0.0    1.1  1  NTP_transferase  Nucleotidyl transferase
    2.3e-07   31.3   0.0    3.4e-07   30.7   0.0    1.4  1  NTP_transf_3     MobA-like NTP transferase domain
     0.0034   17.2   0.0     0.0094   15.7   0.0    1.7  2  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly
  ------ inclusion threshold ------
      0.029   14.3   0.1      0.044   13.7   0.1    1.2  1  CTP_transf_3     Cytidylyltransferase
      0.092   12.6   0.0       0.18   11.7   0.0    1.5  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
       0.11   12.5   0.0       0.21   11.6   0.0    1.4  1  DUF4833          Domain of unknown function (DUF4833)


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   7.2e-30   2.2e-26       1     242 [.      10     276 ..      10     280 .. 0.88

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 7.2e-30
                      EEEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT...................... CS
  NTP_transferase   1 kavILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg...................... 72 
                      kavI + G GtR+ P t++++k ++p ++k +liq+++++++++gi+e iv +t+  + ++e+++ +  +++                      
       CTQ28644.1  10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITE-IVLVTHSSKNSIENHFDTSFELEamlekrvkrqlleevqsicpph 101
                      689999************************.*****************.7778889999*******99888899****************9988 PP

                      SEEEEEEESS--BGGHHHHHTHHHHTTSSE..EEEEETTEEEEST.......THHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEEC..... CS
  NTP_transferase  73 vevlialepegkgtAdAvalaaelledeksdelvlvLggDhlikd.......ayeeavkkaiekaakgtvtfgivpveeateyGviead..... 154
                      v++  + +   kg+ +Av+ a  +++de     +++L++ +l ++       ++ e++ ++ e++a     ++++pve+ t+yGv+  +     
       CTQ28644.1 102 VTIMQVRQGLAKGLGHAVLCAHPVVGDEPV---AVILPDVILDEYesdlsrdNLAEMISRFDETGA---SQIMVEPVEDVTAYGVVDCKgeslk 189
                      888888899999***************995...888887554333566777799999999999999...99****************9977776 PP

                      ..TTSBEEEEECS-SSHSH.CSEECCSEEEEETTHHHHHHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHHH CS
  NTP_transferase 155 ..eegrverfvEKPkeaka.selassGiYvfnsevllflakdleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldsllean 242
                        e+      vEKPk++ a s+la+ G Yv   ++   lak   + +  e ++td++  ++e+++v+++  +k+++   D G+   +++a 
       CTQ28644.1 190 pgESVPMVGVVEKPKADVApSNLAVVGRYVLSADIWPLLAK-TPPGAGDEIQLTDAIDMLIEKETVEAY-HMKGKS--HDCGNKLGYMQAF 276
                      555558899********9999******************88.888999999************999977.555545..7999988777775 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.1e-10   3.4e-07       2     119 ..      12     167 ..      11     230 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.1e-10
                   EEEEESS-TTT....TT.THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHC..HHHH.........................HHTTCTS-EEE-T CS
  NTP_transf_3   2 viLAGGrSsRm....gg.dKallplggkpllervldalraagvdevvvvggde..evla.........................alarlgvrvvede 66 
                   vi  +G ++Rm    +  +K +lpl +kpl+++v++   aag+ e+v+v+ ++  ++++                          + ++ v++++ +
    CTQ28644.1  12 VIPVAGLGTRMlpatKAiPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSknSIENhfdtsfeleamlekrvkrqlleevqSICPPHVTIMQVR 108
                   66679******6654238********************************99434444455566666656666666654443332223355555555 PP

                   TS.S-SHHHHHHHHHHHH.SSSCEEEEETT-TT......--HHHHHHHHHCHHHHTSSEE CS
  NTP_transf_3  67 dp.gkgplaslaaalraaadadavlvlacDmPl......ltpelverllaaaaasgadvv 119
                   +   kg ++++++a   + ++++v+v++ D++l      l+++ +++++ +++++ga+ +
    CTQ28644.1 109 QGlAKGLGHAVLCAHPVV-GDEPVAVILPDVILdeyesdLSRDNLAEMISRFDETGASQI 167
                   443577777777777777.99******999999887777777777777777777776544 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.2e-06    0.0094       3      55 ..      11      65 ..      10      82 .. 0.82
   2 ?   -2.8   0.0       1.5   4.4e+03     106     133 ..     148     175 ..     143     179 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.2e-06
                EEEECTTSSCTT...-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGG CS
        IspD  3 vvipAAGsGkRm...kaglpKqflelkgqtllehtvdallaskavdkivvvvsedd 55
                +vip AG G+Rm    +  pK  l l +++l++  v+   a   + +iv+v +  +
  CTQ28644.1 11 AVIPVAGLGTRMlpaTKAIPKEMLPLVDKPLIQYVVNECIA-AGITEIVLVTHSSK 65
                79*********95545778******************9999.56777877777665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
                 -HHHHHHHHHHHHTTCSEEEEEEE-SSE CS
        IspD 106 kaadiaellaaaeqstqgailalpvkDt 133
                 +++++ae++   +++ ++ i++ pv+D 
  CTQ28644.1 148 SRDNLAEMISRFDETGASQIMVEPVEDV 175
                 5678899999999888899999999995 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.5e-05     0.044      16      82 ..      31      95 ..      26     108 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
                  GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES-HHHHHHHHHTT.SEEEE--TTCSSHHHHHHHHHH CS
  CTP_transf_3 16 KnlldlggkpliayvleaalkskafekvivaTDseeiknvakefg.asvlvtrsslesdterflevvk 82
                  K +l+l +kpli+yv+ + + ++  e v v T  ++ kn +++++  s+ +    ++++++ +le+v+
    CTQ28644.1 31 KEMLPLVDKPLIQYVVNECIAAGITEIVLV-T--HSSKNSIENHFdTSFELEAMLEKRVKRQLLEEVQ 95
                  99*******************998666555.4..3334555555546666666666666666666665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     6e-05      0.18      26     110 ..      21     104 ..      10     108 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6e-05
                 EEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEE CS
     3HCDH_N  26 vlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfaelekiakpdail 110
                 +++  ++++ ++ l  + k l + v ++ + +  +e +l + s ++++e+  d+ +  Ea+ E+ ++Kr++++e+++i++p++ +
  CTQ28644.1  21 RMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEK-RVKRQLLEEVQSICPPHVTI 104
                 5555555555556666666666666666666667777777888899999999***********8.7***************9876 PP

>> DUF4833  Domain of unknown function (DUF4833)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.9e-05      0.21      23      65 ..     247     289 ..     238     299 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.9e-05
     DUF4833  23 kldkkepikvyWiryeekgkkkeLsyiqrklaYGvkvkkvskn 65 
                 +l +ke++++y ++ + ++  ++L+y+q  + YG+++k+  ++
  CTQ28644.1 247 MLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHKTLGDD 289
                 58899********************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2425.32
//
Query:       CTQ28645.1  [L=337]
Description: response regulator of RpoS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-30  103.1   0.1    1.6e-29  102.3   0.1    1.4  1  Response_reg  Response regulator receiver domain
  ------ inclusion threshold ------
       0.17   11.9   0.0       0.31   11.1   0.0    1.5  1  BRCT_3        BRCA1 C Terminus (BRCT) domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.3   0.1   1.8e-33   1.6e-29       1     111 [.      10     120 ..      10     121 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.3 bits;  conditional E-value: 1.8e-33
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +liv+D+p++r+ll+ +l++ g  ++ +aedgk+al+++ e ++dl+++Di+mp+m+Glel++++r++ ++lp+++++a+++++d+ +al++g++d+
    CTQ28645.1  10 ILIVEDEPVFRSLLHGWLTSLGA-TTFQAEDGKDALHKMTEVHPDLMICDISMPRMNGLELVETLRNRGEQLPILMISATENMADIAKALRLGVQDV 105
                   8**********************.999********************************************************************** PP

                   EESSG.-HHHHHHHH CS
  Response_reg  98 lsKpf.dpeeLlkal 111
                   l Kp+ d ++L++ +
    CTQ28645.1 106 LLKPVkDFDRLRETV 120
                   *****7788888765 PP

>> BRCT_3  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.5e-05      0.31       2      59 ..       4      63 ..       3      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.5e-05
      BRCT_3  2 ilkdlkillvseqkefeelWseilklaGaavvkkekseaee..islgkldvvvtdsscpe 59
                +l++ +il+v +++ f++l +  l+  Ga++ ++e  +     +++   d+++ d s+p+
  CTQ28645.1  4 PLAGKQILIVEDEPVFRSLLHGWLTSLGATTFQAEDGKDALhkMTEVHPDLMICDISMPR 63
                8999***************************877655443344777778******99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 2979.53
//
Query:       CTQ28646.1  [L=300]
Description: putative esterase of the alpha-beta hydrolase superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-24   84.7   0.9    3.2e-23   83.0   0.9    1.8  1  Patatin   Patatin-like phospholipase
  ------ inclusion threshold ------
       0.16   11.9   0.3       0.28   11.1   0.3    1.3  1  PriC      Primosomal replication protein priC


Domain annotation for each model (and alignments):
>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.9   3.6e-27   3.2e-23       1     201 [.       8     165 ..       8     167 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 3.6e-27
     Patatin   1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdaealr 99 
                 L+l+ G +rg +++g+++aL +++g+ +di++G S+G+++++++a++r pa   + ++  ++n++  +               +  + +ggl+ +e   
  CTQ28646.1   8 LALGAGAARGWSHIGVINAL-QRAGIEIDIVAGCSIGSLVGAAYACNRLPAL--ESWVCSFSNWDVLKL-------------MDLSWRRGGLLRGEKVF 90 
                 8999****************.**************************99999..555555566666666.............679************** PP

     Patatin 100 ellrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSsafPglfppvsldgelyvDGGilsNv 198
                 +  r++++  +++r+ +r++++                            ++ ++ +e   +++dl  a+raS+++Pgl++pv+++g ++vDG++++ v
  CTQ28646.1  91 NHYRRIMPVTEIERCERRFAAV---------------------------ATNLSTGRELWFTEGDLHLAIRASCSMPGLMSPVRHNGYWLVDGAVVNPV 162
                 **********************...........................789999999999***********************************999 PP

     Patatin 199 Pil 201
                 P+ 
  CTQ28646.1 163 PVS 165
                 985 PP

>> PriC  Primosomal replication protein priC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   3.1e-05      0.28     113     162 ..     203     251 ..     176     253 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHT....T--THHHHHHHHHHHHHHHHHHH CS
        PriC 113 akhqeyerrLeemiaereqqlekaqslaekqklqqeilaleqRlgRCrqa 162
                 +k   + +rL+++++++ ++++  +  +  + + + i++le+Rl+R r a
  CTQ28646.1 203 EKEGPWHTRLRARLTRMSSRRTAVTP-TAMEIMTTSIQVLENRLKRNRMA 251
                 45556*******************99.55555**************8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2230.76
//
Query:       CTQ28647.1  [L=152]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-31  108.2   0.0    3.4e-31  108.0   0.0    1.1  1  UPF0225       UPF0225 domain
    2.1e-17   62.7  22.7    6.4e-11   42.0  11.5    2.2  2  SEC-C         SEC-C motif
     0.0044   17.3   0.4     0.0098   16.2   0.4    1.6  1  CW_binding_1  Putative cell wall binding repeat


Domain annotation for each model (and alignments):
>> UPF0225  UPF0225 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   5.8e-35   3.4e-31       2      99 .]      30     127 ..      29     127 .. 0.99

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 5.8e-35
     UPF0225   2 aeaLmRsRysAyvlkdadYlvatthpetreaeeeaeleatakkvkflkleiletekeekedeatVeFkarlkekgkektlhErSrFvredgrWlYvdg 99 
                 +++LmRsRysA+v+kdadYl++t+hp++++++ +aele+ ++++++l+l++ +++++++ +e++V+F+ar++++++  ++ ErSrF +e+g+W+Y+dg
  CTQ28647.1  30 PSQLMRSRYSAFVMKDADYLIKTWHPSCQAQQFRAELEKGFSQTEWLGLTLFASDEGRAPNEGFVSFVARFNDNNRPGAIIERSRFLKENGQWYYIDG 127
                 89**********************************************************************************************98 PP

>> SEC-C  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   3.3   6.7e-10     4e-06       1      19 []       1      19 [.       1      19 [. 0.95
   2 !   42.0  11.5   1.1e-14   6.4e-11       1      19 []     134     152 .]     134     152 .] 0.97

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 6.7e-10
       SEC-C  1 RNdpCPCGSGkKYKkCCgp 19
                ++++CPCGS + Y  CC++
  CTQ28647.1  1 MSQLCPCGSALEYSSCCQR 19
                79***************86 PP

  == domain 2  score: 42.0 bits;  conditional E-value: 1.1e-14
       SEC-C   1 RNdpCPCGSGkKYKkCCgp 19 
                 RNdpCPCGSGkK+KkCCg+
  CTQ28647.1 134 RNDPCPCGSGKKFKKCCGQ 152
                 9****************95 PP

>> CW_binding_1  Putative cell wall binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.4   1.6e-06    0.0098       2      15 ..     114     127 ..     113     128 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.6e-06
                   EEEEETTEEEEETT CS
  CW_binding_1   2 gWvkdngnWYYfds 15 
                   ++ k+ng+WYY d+
    CTQ28647.1 114 RFLKENGQWYYIDG 127
                   89*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1207.64
//
Query:       CTQ28648.1  [L=280]
Description: formyltetrahydrofolate hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-54  184.5   0.0    1.8e-54  184.2   0.0    1.1  1  Formyl_trans_N  Formyl transferase
    2.7e-08   33.4   0.0    5.8e-08   32.4   0.0    1.6  1  ACT             ACT domain


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.2   0.0     2e-58   1.8e-54       2     181 .]      86     262 ..      85     262 .. 0.98

  Alignments for each domain:
  == domain 1  score: 184.2 bits;  conditional E-value: 2e-58
                     EEEEEESESSHHHHHHHHHHHHTTSECEEEEEEESCTTEHCHHHHHHCCHCCCECHHCCSCCCCCCCHHHHHHHHCTT-SEEEEES--S---HHH CS
  Formyl_trans_N   2 kivvlisgtgsnlqalldalkkgsleadvvlvvsnkdkaaglekaeaasiptkvfeekkleprsqfeeelaeelkelkadlivlagymkllpkel 96 
                     ++v+l+++++++l +ll+++++g+l++d+++v++n+d+++  +  e+++ip++++++++l+++ ++++ + ++++++++d++vla+ym++l++e+
      CTQ28648.1  86 RVVILVTKEAHCLGDLLMKANYGGLDVDIAAVIGNHDTLR--SLVERFGIPFELVSHEGLSRE-EHDQRMGDAIAAHEPDYVVLAKYMRVLTPEF 177
                     9**************************************9..999**************9876.9****************************** PP

                     HHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N  97 vqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehkalveal 181
                     v+++++ki+niH+S+LP+f Ga+++++a+e+G+k  G+t h+v+++lD+G+i++q+ +++++++t+e++++  +d+e+++l +al
      CTQ28648.1 178 VARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRAL 262
                     *********************************************************************************9986 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   6.5e-12   5.8e-08       2      64 ..       8      69 ..       7      71 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 6.5e-12
                EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHT CS
         ACT  2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkk 64
                vlr+ +pD++Gl+ar+++++ ++ +Ni+  + + ++++ +++++ +++++  +++++l+ l +
  CTQ28648.1  8 VLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRT-GRFFMRTELEGIFNDATLLADLDS 69
                799**********************************9.********9999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       292  (0.0162865); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2088.23
//
Query:       CTQ28649.1  [L=77]
Description: hypothetical protein CH1034_240146 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 607.15
//
Query:       CTQ28650.1  [L=147]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-15   55.9   0.5    4.9e-15   54.8   0.2    1.8  2  HTH_24          Winged helix-turn-helix DNA-binding
    4.5e-14   52.0   1.8    5.9e-14   51.6   0.8    1.8  2  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    2.9e-11   43.2   0.0    4.6e-11   42.5   0.0    1.3  1  AsnC_trans_reg  Lrp/AsnC ligand binding domain
    0.00021   21.3   0.1    0.00045   20.2   0.1    1.6  1  HTH_20          Helix-turn-helix domain
    0.00043   20.2   0.0    0.00082   19.3   0.0    1.4  1  MarR            MarR family
    0.00088   19.7   0.1     0.0042   17.5   0.1    2.0  2  HTH_27          Winged helix DNA-binding domain
     0.0019   17.9   0.2     0.0046   16.7   0.2    1.6  1  HTH_IclR        IclR helix-turn-helix domain
     0.0026   17.6   0.7     0.0047   16.8   0.7    1.6  1  MarR_2          MarR family
     0.0075   16.2   0.3      0.016   15.2   0.1    1.6  2  HTH_Crp_2       Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.017   14.9   0.0       0.03   14.1   0.0    1.5  1  LexA_DNA_bind   LexA DNA binding domain
      0.021   14.6   0.0      0.027   14.2   0.0    1.2  1  DUF294_C        Putative nucleotidyltransferase substrate bin
      0.066   12.6   0.0      0.088   12.2   0.0    1.2  1  DUF620          Protein of unknown function (DUF620)
      0.097   12.5   0.0       0.16   11.8   0.0    1.4  1  DUF501          Protein of unknown function (DUF501)
       0.18   11.7   0.0       0.37   10.7   0.0    1.5  1  RuvB_C          RuvB C-terminal winged helix domain
       0.24   11.0   0.0       0.42   10.2   0.0    1.4  1  DDRGK           DDRGK domain


Domain annotation for each model (and alignments):
>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.2   4.1e-18   4.9e-15       1      48 []       5      52 ..       5      52 .. 0.98
   2 ?   -2.9   0.0       4.3   5.2e+03      31      38 ..     137     144 ..     136     146 .. 0.85

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 4.1e-18
      HTH_24  1 ldetdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                lde+dr+IL++L +++r s + L+ r+gl+++ + +r+krLee G+I+
  CTQ28650.1  5 LDEIDRAILSCLTQDARVSLKVLSARVGLTSPSTAERVKRLEERGVIQ 52
                7*********************************************95 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.3
      HTH_24  31 pstvnrrl 38 
                 +s+v+rrl
  CTQ28650.1 137 SSPVKRRL 144
                 58999997 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.8     5e-17   5.9e-14       1      42 []       5      46 ..       5      46 .. 0.99
   2 ?   -3.5   0.0       8.2   9.8e+03      32      38 ..     138     144 ..     136     144 .. 0.79

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 5e-17
  HTH_AsnC-type  1 LDeiDrkILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   LDeiDr+IL++L +daR s + L++rvGl+ +  ++Rv+rLe
     CTQ28650.1  5 LDEIDRAILSCLTQDARVSLKVLSARVGLTSPSTAERVKRLE 46
                   8****************************************8 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8.2
  HTH_AsnC-type  32 stvlrRv 38 
                    s+v rR+
     CTQ28650.1 138 SPVKRRL 144
                    7899995 PP

>> AsnC_trans_reg  Lrp/AsnC ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   3.9e-14   4.6e-11       2      73 ..      72     136 ..      70     138 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 3.9e-14
                     EEEE-GGGTTHHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEEEEEEEE CS
  AsnC_trans_reg   2 lvslepghpeqleefeealaelpeVvecyrvtGdydyllkvvvrdlealerflreklaslpgvartetsivl 73 
                     +v+  pg    l+++ + ++++pe +e  +vtG+++++++ vvrd+++l+++    l+ l ++a+ +ts+v 
      CTQ28650.1  72 RVRPLPGL---LQKVDKYIQAMPECIESDKVTGEDCFVMRLVVRDIAQLDTL----LDGLAEYAQCNTSVVK 136
                     55556566...99***************************************....9999999******996 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   3.8e-07   0.00045       9      55 ..       6      52 ..       4      57 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.8e-07
                -HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
      HTH_20  9 hPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLve 55
                ++  r+il+ L++++ ++++ l +r++l+  +   +++ Lee g + 
  CTQ28650.1  6 DEIDRAILSCLTQDARVSLKVLSARVGLTSPSTAERVKRLEERGVIQ 52
                56679***************************************986 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   6.9e-07   0.00082       8      48 ..      12      52 ..      10      54 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 6.9e-07
                HHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  8 iLrilyeqgplsvseLakklgvskstvtrvldrLekkGlie 48
                iL +l +    s++ L  ++g++++++ + ++rLe++G i+
  CTQ28650.1 12 ILSCLTQDARVSLKVLSARVGLTSPSTAERVKRLEERGVIQ 52
                899***********************************986 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   3.5e-06    0.0042       4      49 ..       8      52 ..       5      64 .. 0.91
   2 ?   -0.3   0.0       1.3   1.5e+03      31      50 ..      59      82 ..      53      85 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.5e-06
      HTH_27  4 qqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLve 49
                 ++++L ++  +++r++l+ l+ r+ +++ ++++ +k+L+e+G+++
  CTQ28650.1  8 IDRAILSCLT-QDARVSLKVLSARVGLTSPSTAERVKRLEERGVIQ 52
                6889******.*********************************94 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.3
      HTH_27 31 edshisyslkkLtek....GLver 50
                + ++  ysl +L++     GL+++
  CTQ28650.1 59 NLAALGYSLQALVRVrplpGLLQK 82
                556677999999986566677765 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   3.9e-06    0.0046       7      48 ..      11      51 ..      10      53 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.9e-06
                HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyv 48
                aiL +l++ ++ ++l+ l++r gl+ +++   ++ L+e+G +
  CTQ28650.1 11 AILSCLTQDAR-VSLKVLSARVGLTSPSTAERVKRLEERGVI 51
                699***99999.7***************************87 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.7   3.9e-06    0.0047      16      51 ..      10      51 ..       2      75 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.9e-06
                CTTTS......EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2 16 rrpgr......dltvgelarrlglsksavsrilkrLvaaGLv 51
                r+         +++ + l +r gl+ +++  ++krL+++G +
  CTQ28650.1 10 RAILScltqdaRVSLKVLSARVGLTSPSTAERVKRLEERGVI 51
                4444455555569***************************98 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.3e-05     0.016      20      57 ..      20      58 ..       5      64 .. 0.83
   2 ?   -2.4   0.0       4.2     5e+03      57      66 ..     109     118 ..     102     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.3e-05
                EEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET.EEE CS
   HTH_Crp_2 20 lpltqeelAsmlGltretvsrilseLkreglis.rg.rri 57
                 +++ + l++++Glt  ++    ++L+++g+i+  g r +
  CTQ28650.1 20 ARVSLKVLSARVGLTSPSTAERVKRLEERGVIQgYGaR-V 58
                5789999**************************55633.4 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.2
                 EEES-HHHHH CS
   HTH_Crp_2  57 irildleaLr 66 
                 ++++d+++L 
  CTQ28650.1 109 LVVRDIAQLD 118
                 7788888885 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.5e-05      0.03      31      57 ..      27      52 ..       6      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.5e-05
                   HHHHHTS-.HHHHHHHHHHHHHTTSEE CS
  LexA_DNA_bind 31 iaralglkSpsaveehLkaLerKGyie 57
                   ++ ++gl+Sps++ e+ k+Le +G+i+
     CTQ28650.1 27 LSARVGLTSPSTA-ERVKRLEERGVIQ 52
                   6789******997.69*********96 PP

>> DUF294_C  Putative nucleotidyltransferase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.3e-05     0.027      50      89 ..      24      63 ..       7      89 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.3e-05
    DUF294_C 50 vRllALeagieatnTleRlkalaeagvlsaelaedlleay 89
                 ++l+ + g+++ +T+eR+k+l+e+gv++   a+  l a+
  CTQ28650.1 24 LKVLSARVGLTSPSTAERVKRLEERGVIQGYGARVNLAAL 63
                468999**********************876665544444 PP

>> DUF620  Protein of unknown function (DUF620)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.4e-05     0.088      82     125 ..      74     113 ..      64     131 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.4e-05
      DUF620  82 rPlrrvlqGLdprstanlfseaacvgekkindedcfvLkleadk 125
                 rPl  +lq +d      + +  +c+   k+++edcfv++l + +
  CTQ28650.1  74 RPLPGLLQKVD----KYIQAMPECIESDKVTGEDCFVMRLVVRD 113
                 55555555555....45556789****************97654 PP

>> DUF501  Protein of unknown function (DUF501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00013      0.16      27      60 ..      26      59 ..       8      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
      DUF501 27 pfptlywLtcpelvkavsrLEaeglvkaleekla 60
                +  + + Lt+p  +++v+rLE++g+++ + ++++
  CTQ28650.1 26 VLSARVGLTSPSTAERVKRLEERGVIQGYGARVN 59
                55666779*******************9988875 PP

>> RuvB_C  RuvB C-terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00031      0.37       4      37 ..       5      35 ..       4      43 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00031
                --HHHHHHHHHHHHT.TT--B-HHHHHHHTT--H CS
      RuvB_C  4 LdeldikyLkllkekfkggpvglktlaailgeek 37
                Lde+d+ +L++l+   ++  v+lk+l+a +g+++
  CTQ28650.1  5 LDEIDRAILSCLT---QDARVSLKVLSARVGLTS 35
                89**********9...89*********9998765 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00035      0.42     107     145 ..      15      53 ..       2      54 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00035
                 HHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS-E CS
       DDRGK 107 yikekKvvlleelavkfklktqevierikeLeeqgsltG 145
                  + +   v l+ l+++ +l++   +er+k Lee g ++G
  CTQ28650.1  15 CLTQDARVSLKVLSARVGLTSPSTAERVKRLEERGVIQG 53 
                 556666789999*************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1189.71
//
Query:       CTQ28651.1  [L=298]
Description: UAA transporter family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-30  103.5  43.3      6e-17   62.1  14.0    2.0  2  EamA        EamA-like transporter family
  ------ inclusion threshold ------
        5.3    7.1   7.4        3.7    7.7   1.1    2.7  2  Adipogenin  Adipogenin


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8  21.3   1.8e-16   1.6e-12       4     136 ..       7     135 ..       4     136 .. 0.94
   2 !   62.1  14.0   6.7e-21     6e-17       2     134 ..     149     276 ..     148     279 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.8e-16
        EamA   4 illallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsleP 102
                 ++ + la++++++ + +   ll+ ++   ++f+r+li+++ ll++++l+++++ +   +  l+l+++g  + v+ +ll+f a +++s + a+++ +++P
  CTQ28651.1   7 VWQMSLAMIISGSIGAFV--LLSGLPVTDVVFWRCLIGALTLLVFIVLSRQPF-SRLTRFTLALAVIGGAALVVNWLLLFAAYSRISIGMATVVYNTQP 102
                 55677999*****99999..99*******************************.7777788999*********************************** PP

        EamA 103 vftlilsvlllgekltlkqllgivlillGvllil 136
                  + ++++++l ge+++  ++  ++l++ Gv+++l
  CTQ28651.1 103 FMLVLMGMVL-GERVSAVKWGWLLLAFGGVVILL 135
                 *999999998.********************986 PP

  == domain 2  score: 62.1 bits;  conditional E-value: 6.7e-21
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsl 100
                  g+llal aa+f+a++++++++ l+ ++ ++++f++ l++ ++ll++    e +       +w +ll+lg++ t +++ l+++a++k++  + + ++++
  CTQ28651.1 149 TGVLLALGAAFFYALTAIIARK-LHPLPAQHIAFIQVLVGVVMLLPLVHAPELTA----SFPWRYLLILGIVHTGIMYQLLYSAIQKLPTPVTGSLSFI 242
                 69********************.7*************************999999....778999********************************** PP

        EamA 101 ePvftlilsvlllgekltlkqllgivlillGvll 134
                  P+++++  +l+++  l+  qllg +lil++++ 
  CTQ28651.1 243 YPLVAMVVDYLVFHHALSAVQLLGGMLILFAAAG 276
                 ******************************9986 PP

>> Adipogenin  Adipogenin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.1   0.00041       3.7      10      37 ..      27      54 ..      22      62 .. 0.80
   2 ?    1.9   0.6     0.026   2.3e+02       3      34 ..     243     270 ..     241     274 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00041
  Adipogenin 10 ndltlsflvfwlclpvalllfllivwlr 37
                  l ++ +vfw cl  al l+++iv  r
  CTQ28651.1 27 SGLPVTDVVFWRCLIGALTLLVFIVLSR 54
                55667789*********99988888655 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.026
  Adipogenin   3 yplvplvndltlsflvfwlclpvalllflliv 34 
                 yplv +v d    +lvf   l    ll  +++
  CTQ28651.1 243 YPLVAMVVD----YLVFHHALSAVQLLGGMLI 270
                 777777765....8999999875555444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2411.43
//
Query:       CTQ28652.1  [L=225]
Description: nitrate reductase 1, gamma (cytochrome b(NR)) subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-79  265.4   9.2      4e-79  265.2   9.2    1.0  1  Nitrate_red_gam  Nitrate reductase gamma subunit


Domain annotation for each model (and alignments):
>> Nitrate_red_gam  Nitrate reductase gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.2   9.2   2.2e-83     4e-79       1     219 []       5     224 ..       5     224 .. 0.99

  Alignments for each domain:
  == domain 1  score: 265.2 bits;  conditional E-value: 2.2e-83
  Nitrate_red_gam   1 ntllfvvlPYvalavlvvgsllryrydqftwtskSsqllekklLrlgsplFHvGilvvllgHlvGlliPksvtealgvseelyqllalvaGlia 94 
                      n+++f ++PY+a +v+++gs+lry+y q+tw++ Ssq+l++k ++l+s+lFH+Gil +++gH++G+l+P++++e++ +  +++q +a++aG+++
       CTQ28652.1   5 NMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYESF-LPIDVKQKMAMIAGGAC 97 
                      689*************************************************************************.9**************** PP

  Nitrate_red_gam  95 gvlalvGlllLllRRltnkrvraatsasDkvvlllLllqillGllttlvsaldy.gseretispwlrslltlqpd.aellaevplifklHvllg 186
                      gv++lvG llLl RRl ++rvra+t+ +D+++l lL++q++lGllt+++sa+++ gse+++++ w++s++t++    ++l +v +if++H++lg
       CTQ28652.1  98 GVMTLVGGLLLLKRRLLSPRVRATTTGADILILSLLMVQCALGLLTIPFSAQHMdGSEMMKLVGWAQSVVTFHGGaSQHLDGVAFIFRVHLVLG 191
                      **************************************************************************9899**************** PP

  Nitrate_red_gam 187 lllfalfPFtrLvHvlsapleYllrpyqvvrsr 219
                      ++lf+lfPF+rLvH++sap+eYl+r+yq+vr r
       CTQ28652.1 192 MTLFLLFPFSRLVHIWSAPVEYLTRKYQIVRAR 224
                      *******************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1728.42
//
Query:       CTQ28653.1  [L=236]
Description: molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-11   43.5   3.4    2.9e-11   43.5   3.4    1.8  2  Nitrate_red_del  Nitrate reductase delta subunit


Domain annotation for each model (and alignments):
>> Nitrate_red_del  Nitrate reductase delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   3.4   1.6e-15   2.9e-11       7     129 ..      38     152 ..      22     159 .. 0.75
   2 ?   -0.7   0.1     0.074   1.3e+03      91     117 ..     155     179 ..     142     199 .. 0.68

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 1.6e-15
  Nitrate_red_del   7 eveealaelaealaaededllelaaeYtrLFlgpgrrsasPyesvYlsekkgllfgestlevrefyrqaglevaeefneppDHlaveLeflahL 100
                      e + al+ + + l   ++d l+ +a Y +LF+ ++ +s++++e v+ +    + +g++ +++ + y+++gl  +++  e pDHl+++Le+la+L
       CTQ28653.1  38 EDAHALGVFLRDL--VAQDPLDAQAAYSELFDRGRATSLLLFEHVHGE---SRDRGQAMVDLMAQYERHGLLLDSH--ELPDHLPLYLEYLAQL 124
                      4444444455555..789999***********8888888888888888...36689999************84443..46************** PP

  Nitrate_red_del 101 aereaeaeea.eeaealleaqkafleehll 129
                       e+ea       + + +l  + a l+++ +
       CTQ28653.1 125 PEEEALG--GlRDVAPILGLLSARLQQRES 152
                      *988753..234555555555555555555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.074
  Nitrate_red_del  91 aveLeflahLaereaeaeeaeeaeall 117
                      av++e+l +La ++ ++++   ae+++
       CTQ28653.1 155 AVLFELLLKLANTQVDSQKV--AEKIA 179
                      67788888888888776543..33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1757.40
//
Query:       CTQ28654.1  [L=511]
Description: nitrate reductase 1, beta (Fe-S) subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.8e-38  128.3   5.7    2.2e-37  127.2   5.7    1.6  1  Fer4_11         4Fe-4S dicluster domain
    2.7e-30  103.9   0.0    4.8e-30  103.1   0.0    1.4  1  Nitr_red_bet_C  Respiratory nitrate reductase beta C-terminal
    4.9e-09   36.6  15.9    8.4e-06   26.3   4.7    3.5  3  Fer4_7          4Fe-4S dicluster domain
    1.3e-08   34.8  15.8    1.2e-05   25.3   4.1    3.3  3  Fer4_10         4Fe-4S dicluster domain
    7.5e-06   25.8  19.7     0.0028   17.7   0.2    3.9  4  Fer4_6          4Fe-4S binding domain
    0.00049   20.2  17.9       0.01   15.9   4.7    3.3  3  Fer4_9          4Fe-4S dicluster domain
     0.0098   15.9  22.7      0.014   15.5   1.9    4.0  3  Fer4_2          4Fe-4S binding domain
  ------ inclusion threshold ------
      0.016   15.0   2.0      0.016   15.0   2.0    4.8  4  Fer4            4Fe-4S binding domain
      0.021   15.5   7.9        1.2    9.9   0.1    3.5  3  Fer4_15         4Fe-4S single cluster domain
      0.047   14.2   9.2      0.048   14.2   0.1    3.5  3  Fer4_13         4Fe-4S single cluster domain of Ferredoxin I
      0.058   13.9  14.3        1.2    9.8   0.1    4.0  3  Fer4_17         4Fe-4S dicluster domain
      0.082   13.1  21.8      0.091   12.9   1.1    3.1  3  Fer4_21         4Fe-4S dicluster domain
       0.25   11.8   0.2       0.25   11.8   0.2    3.8  3  Fer4_8          4Fe-4S dicluster domain
        2.2    9.0  24.5          1   10.1   0.9    3.9  3  Fer4_4          4Fe-4S binding domain
        3.4    8.7  15.8         66    4.6   0.2    3.9  2  Fer4_16         4Fe-4S double cluster binding domain


Domain annotation for each model (and alignments):
>> Fer4_11  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   5.7   1.8e-40   2.2e-37       2      99 ..     175     271 ..     174     272 .. 0.98

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 1.8e-40
     Fer4_11   2 ewlflpeqCrhCleppCvasapseaivkdeetGaVlldektkkeevrevveacPykivrkneetgkvekCdmcldrveaGllpacvescptgalnfgd 99 
                 ++++lp+ C+hCl+p+Cva++ps+ai+k+ee+G+Vl+d+++++ ++r+++++cPyk+++ n+++gk+ekC +c++r+e+G++++c+e+c+++++++g+
  CTQ28654.1 175 FMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCR-GWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIESGMPTVCSETCVGRIRYLGV 271
                 699***************************************9.***************************************************996 PP

>> Nitr_red_bet_C  Respiratory nitrate reductase beta C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0     4e-33   4.8e-30       1      81 []     358     436 ..     358     436 .. 0.97

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 4e-33
  Nitr_red_bet_C   1 LsPvvsaveagkldeeadgllpaveslRiPveYLAnLltAGdeepvekaLkrllamRaymRaknvegeadeavleevglte 81 
                     LsP++sa++ag+l ++ +g+lp+veslRiPv+YLAnLltAGd++pv  aLkr+lamR+y+Ra++v+g +d+++leevgl+e
      CTQ28654.1 358 LSPIQSAADAGEL-GS-NGILPDVESLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETVDGVVDTRALEEVGLSE 436
                     9**********99.65.8*************************************************************85 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   4.1e-05     0.049       1      19 [.      15      33 ..      15      73 .. 0.79
   2 !   26.3   4.7     7e-09   8.4e-06       2      50 ..     183     228 ..     176     230 .. 0.90
   3 ?    2.5   0.4      0.19   2.3e+02      34      48 ..     239     262 ..     233     266 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-05
      Fer4_7  1 rCigCgaCvaaCpvkaiel 19
                +CigC+ C ++C++ + + 
  CTQ28654.1 15 KCIGCHTCSVTCKNVWTSR 33
                7***********8766654 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 7e-09
      Fer4_7   2 CigCg..aCvaaCpvkaieldeeenekgtekveidpekClgCgaCvavCPt 50 
                 C +C   aCva+Cp++ai+ +ee   +    v id++kC g ++C++ CP+
  CTQ28654.1 183 CEHCLnpACVATCPSGAIYKREE---D--GIVLIDQDKCRGWRMCITGCPY 228
                 9999556*************987...3..5899*****************8 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.19
      Fer4_7  34 dpekClgC.........gaCvavC 48 
                 ++ekC++C         ++C ++C
  CTQ28654.1 239 KSEKCIFCypriesgmpTVCSETC 262
                 6799****6666666666899999 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   4.8e-05     0.058       2      23 ..       9      28 ..       8      58 .. 0.75
   2 !   25.3   4.1   9.9e-09   1.2e-05       6      56 .]     180     227 ..     175     227 .. 0.94
   3 ?    3.1   0.6     0.089   1.1e+02      39      55 ..     237     262 ..     229     263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.8e-05
     Fer4_10  2 vvidddtCirCgkCvkaCPadl 23
                +v++ d+Ci+C +C   C  ++
  CTQ28654.1  9 MVLNLDKCIGCHTCSVTC--KN 28
                68999*************..33 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 9.9e-09
     Fer4_10   6 ddtCirCg..kCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 +  C +C   +Cv+ CP+     ga+++++e++ v ++ +kC g+ +C+  CP
  CTQ28654.1 180 PRLCEHCLnpACVATCPS-----GAIYKREEDGIVLIDQDKCRGWRMCITGCP 227
                 678****9899*******.....*****************************9 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.089
     Fer4_10  39 rkkvekCtgc.........gaCveaC 55 
                 ++k+ekC++c         + C e C
  CTQ28654.1 237 SGKSEKCIFCypriesgmpTVCSETC 262
                 6799******7777776666999998 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   1.1    0.0012       1.4       7      19 ..      14      26 ..      11      35 .. 0.91
   2 !    9.6   3.1   0.00085         1       8      24 .]     182     200 ..     179     200 .. 0.87
   3 !   17.7   0.2   2.3e-06    0.0028       1      22 [.     208     229 ..     208     232 .. 0.91
   4 ?   -2.6   0.1       6.1   7.3e+03       6      13 ..     240     247 ..     239     248 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0012
      Fer4_6  7 dkCigCgdCvrvC 19
                dkCigC  C + C
  CTQ28654.1 14 DKCIGCHTCSVTC 26
                9***********9 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00085
      Fer4_6   8 kCigC.gd.CvrvCPegai 24 
                 +C +C ++ Cv+ CP gai
  CTQ28654.1 182 LCEHClNPaCVATCPSGAI 200
                 899**666*********98 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 2.3e-06
      Fer4_6   1 vveidpdkCigCgdCvrvCPeg 22 
                 +v id+dkC g + C++ CP++
  CTQ28654.1 208 IVLIDQDKCRGWRMCITGCPYK 229
                 588*****************85 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 6.1
      Fer4_6   6 pdkCigCg 13 
                  +kCi C+
  CTQ28654.1 240 SEKCIFCY 247
                 58999786 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.2   0.00017      0.21       1      17 [.      15      31 ..       9      54 .. 0.78
   2 !   15.9   4.7   8.8e-06      0.01       2      49 ..     183     229 ..     182     231 .. 0.89
   3 ?    0.1   7.2       0.8   9.5e+02       1      46 [.     215     262 ..     215     266 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
      Fer4_9  1 kCtgCgaCveaCpagvv 17
                kC+gC++C   C++  +
  CTQ28654.1 15 KCIGCHTCSVTCKNVWT 31
                69999999999976544 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 8.8e-06
      Fer4_9   2 CtgCga..CveaCpagvvvedaaerkarlraaseeaCigCgaCveaCpkg 49 
                 C  C +  Cv+ Cp+g++ +++  +++ ++++   +C g + C+  Cp +
  CTQ28654.1 183 CEHCLNpaCVATCPSGAIYKREEDGIVLIDQD---KCRGWRMCITGCPYK 229
                 99997666********************9875...8************86 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.8
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraaseeaCigCga.........CveaC 46 
                 kC g + C++ Cp++ +   ++ +k +       +Ci+C           C e C
  CTQ28654.1 215 KCRGWRMCITGCPYKKIYFNWKSGKSE-------KCIFCYPriesgmptvCSETC 262
                 6788889******99999999988887.......599998777777777777777 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.9   1.1e-05     0.014       3      20 ..       9      26 ..       7      28 .. 0.87
   2 !    7.8   1.9    0.0033         4       5      21 ..     178     196 ..     175     197 .. 0.86
   3 !    6.6   0.1    0.0075       8.9       3      22 .]     209     228 ..     207     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
      Fer4_2  3 vvvdtdrCigCgaCvsaC 20
                +v + d+CigC +C   C
  CTQ28654.1  9 MVLNLDKCIGCHTCSVTC 26
                57899*********8889 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0033
      Fer4_2   5 vdtdrCigCg..aCvsaCP 21 
                 + ++ C +C   aCv  CP
  CTQ28654.1 178 YLPRLCEHCLnpACVATCP 196
                 66889****889******* PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0075
      Fer4_2   3 vvvdtdrCigCgaCvsaCPa 22 
                 v +d d+C g + C++ CP+
  CTQ28654.1 209 VLIDQDKCRGWRMCITGCPY 228
                 789******999******95 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   2.0   1.3e-05     0.016       2      18 ..      10      26 ..       9      28 .. 0.89
   2 ?    8.6   0.9    0.0014       1.7      13      24 .]     190     201 ..     190     201 .. 0.94
   3 ?    4.2   0.4     0.034        41       2      20 ..     210     228 ..     209     229 .. 0.88
   4 ?    2.6   0.3      0.11   1.4e+02       6      11 ..     241     246 ..     239     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
                EEETTTSSS-THHHHHS CS
        Fer4  2 videekCigCGaCvevC 18
                v + +kCigC +C   C
  CTQ28654.1 10 VLNLDKCIGCHTCSVTC 26
                6799**********999 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0014
                 HHHHHSTTTEEE CS
        Fer4  13 aCvevCPvgAIt 24 
                 aCv  CP gAI+
  CTQ28654.1 190 ACVATCPSGAIY 201
                 7**********6 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.034
                 EEETTTSSS-THHHHHSTT CS
        Fer4   2 videekCigCGaCvevCPv 20 
                  id++kC g   C+  CP+
  CTQ28654.1 210 LIDQDKCRGWRMCITGCPY 228
                 59*****999999999997 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.11
                 TTSSS- CS
        Fer4   6 ekCigC 11 
                 ekCi+C
  CTQ28654.1 241 EKCIFC 246
                 9***** PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1     0.001       1.2       3      28 ..      11      35 ..       9      59 .. 0.78
   2 ?   -1.4   0.6       3.5   4.2e+03      56      64 ..     192     200 ..     184     201 .. 0.86
   3 ?    8.7   0.2    0.0025         3       1      19 [.     209     227 ..     209     245 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
     Fer4_15  3 vDrdaCigcglCvaeapevfeldedg 28
                ++ d+Cigc  C   +++v +   +g
  CTQ28654.1 11 LNLDKCIGCHTCSVTCKNVWTSR-EG 35
                6789************9997766.45 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.5
     Fer4_15  56 araCPvdAI 64 
                 +++CP +AI
  CTQ28654.1 192 VATCPSGAI 200
                 578999999 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0025
     Fer4_15   1 VvvDrdaCigcglCvaeap 19 
                 V +D+d+C g  +C++ +p
  CTQ28654.1 209 VLIDQDKCRGWRMCITGCP 227
                 78*************9996 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1     4e-05     0.048       2      28 ..      12      38 ..      11      60 .. 0.82
   2 ?    2.1   1.0      0.24   2.9e+02      11      27 ..     190     208 ..     183     218 .. 0.73
   3 ?    1.5   0.6      0.37   4.5e+02       1      17 [.     211     227 ..     211     229 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4e-05
     Fer4_13  2 DrdtCiacgaCvelaPdvFeeddegga 28
                + d+Ci+c++C  ++ +v    +  ++
  CTQ28654.1 12 NLDKCIGCHTCSVTCKNVWTSREGMEY 38
                569***************988876554 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.24
     Fer4_13  11 aCvelaPd..vFeeddegg 27 
                 aCv+++P   +++++++g 
  CTQ28654.1 190 ACVATCPSgaIYKREEDGI 208
                 79****9544899988754 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.37
     Fer4_13   1 VDrdtCiacgaCvelaP 17 
                 +D+d+C +   C   +P
  CTQ28654.1 211 IDQDKCRGWRMCITGCP 227
                 8************9999 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00097       1.2      44      57 ..      14      27 ..       4      64 .. 0.75
   2 ?    8.0   0.4    0.0034         4       2      24 ..     183     207 ..     182     211 .. 0.84
   3 ?    1.2   3.6      0.46   5.5e+02       1      18 [.     215     232 ..     215     293 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00097
     Fer4_17 44 slCieCgeCerkCP 57
                ++Ci+C+ C+  C 
  CTQ28654.1 14 DKCIGCHTCSVTCK 27
                56666666666664 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0034
     Fer4_17   2 CiqCgy..ClpeCpsyeaydnepkk 24 
                 C +C    C++ Cps+++y+ e++ 
  CTQ28654.1 183 CEHCLNpaCVATCPSGAIYKREEDG 207
                 99999555***********998875 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.46
     Fer4_17   1 rCiqCgyClpeCpsyeay 18 
                 +C++ ++C+  Cp+ ++y
  CTQ28654.1 215 KCRGWRMCITGCPYKKIY 232
                 6999999******97775 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.1   7.6e-05     0.091       4      20 ..      12      28 ..       9      37 .. 0.81
   2 ?   12.1   4.4   0.00014      0.17       9      53 ..     184     228 ..     180     232 .. 0.72
   3 ?   -2.7   1.7       5.6   6.6e+03      33      42 ..     254     263 ..     239     267 .. 0.45

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.6e-05
     Fer4_21  4 dedkCigCgkCliaCed 20
                + dkCigC  C ++C++
  CTQ28654.1 12 NLDKCIGCHTCSVTCKN 28
                56889999999999985 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00014
     Fer4_21   9 igC..gkCliaCedtshqaieidaktvl.kvvedeCvGCnlCssvCPv 53 
                  +C    C+ +C+     ai + ++  +  + +d+C G  +C++ CP 
  CTQ28654.1 184 EHClnPACVATCP---SGAIYKREEDGIvLIDQDKCRGWRMCITGCPY 228
                 4552236999999...47886666655505569**************6 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.6
     Fer4_21  33 vlkvvedeCv 42 
                 + +v +++Cv
  CTQ28654.1 254 MPTVCSETCV 263
                 2334444454 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00021      0.25       2      17 ..      13      28 ..      12      64 .. 0.80
   2 ?    0.5   2.5      0.73   8.8e+02      50      63 ..     182     197 ..     149     199 .. 0.66
   3 ?   -2.2   0.0       5.1     6e+03      10      15 ..     257     262 ..     240     306 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00021
      Fer4_8  2 lekCieCgaCqsaCpv 17
                l+kCi+C  C  +C  
  CTQ28654.1 13 LDKCIGCHTCSVTCKN 28
                6799999999999963 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.73
      Fer4_8  50 sCttcga..CtevCpv 63 
                  C +c +  C+  Cp 
  CTQ28654.1 182 LCEHCLNpaCVATCPS 197
                 4555554557777765 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 5.1
      Fer4_8  10 aCqsaC 15 
                  C ++C
  CTQ28654.1 257 VCSETC 262
                 455666 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.5    0.0022       2.6       2      15 ..      14      27 ..      13      37 .. 0.90
   2 ?    4.5   2.7     0.051        61       8      17 .]     189     198 ..     181     198 .. 0.73
   3 ?   10.1   0.9   0.00084         1       1      16 [.     213     228 ..     213     229 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0022
      Fer4_4  2 erCigCgsCvaaCP 15
                ++CigC  C  +C+
  CTQ28654.1 14 DKCIGCHTCSVTCK 27
                99*******99996 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.051
      Fer4_4   8 gsCvaaCPqg 17 
                 ++Cva+CP+g
  CTQ28654.1 189 PACVATCPSG 198
                 38******86 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00084
      Fer4_4   1 qerCigCgsCvaaCPq 16 
                 q++C g + C+  CP+
  CTQ28654.1 213 QDKCRGWRMCITGCPY 228
                 79*************8 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2     0.055        66      53      64 ..      15      26 ..       8      60 .. 0.82
   2 ?    0.4  10.6       1.1   1.3e+03       2      30 ..     183     216 ..     182     263 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.055
     Fer4_16 53 aitgCdiCqdvC 64
                +++gC +C  +C
  CTQ28654.1 15 KCIGCHTCSVTC 26
                455666665555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.1
     Fer4_16   2 CgtCgk..CaevCPtnaikekkekei...earec 30 
                 C  C +  C+ +CP++ai +++e  i   ++++c
  CTQ28654.1 183 CEHCLNpaCVATCPSGAIYKREEDGIvliDQDKC 216
                 88886556**********9986655322244555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3897.89
//
Query:       CTQ28655.1  [L=1247]
Description: nitrate reductase 1, alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.1e-189  630.0   0.0   3.7e-189  629.2   0.0    1.4  1  Molybdopterin    Molybdopterin oxidoreductase
    2.2e-24   85.6   0.1    1.6e-22   79.6   0.0    2.5  2  Molydop_binding  Molydopterin dinucleotide binding domain
    3.1e-17   62.7   4.0    9.1e-17   61.2   4.0    1.9  1  Nitr_red_alph_N  Respiratory nitrate reductase alpha N-termin
     0.0053   16.7   0.1      0.013   15.5   0.1    1.6  1  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  629.2   0.0  8.2e-193  3.7e-189       1     432 []     108     833 ..     108     833 .. 1.00

  Alignments for each domain:
  == domain 1  score: 629.2 bits;  conditional E-value: 8.2e-193
                    B--S-EEEC..................................TTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHH CS
  Molybdopterin   1 RlkyPmvRk..................................qargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslasl 62 
                    RlkyP++Rk                                  qarg+G+Fvr+sW+e++eliaas++yt+k+ygpdrvagfs++p+msm+s+as+
     CTQ28655.1 108 RLKYPLMRKrlmkmwreakvqhsdpveawasiiedadkaksfkQARGRGGFVRSSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASG 203
                    9*********************************************************************************************** PP

                    HHHHHHTT-EEE-BEECCGGGTTHHHHCHHCCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECSSB-HCGGGC CS
  Molybdopterin  63 kkllsllggknlsfydwyadlppasaqqtigsdsrsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigpryaellkfa 158
                    +++lsl+gg++lsfydwy+dlppas+    ++++++++es     d++ns++ii+wGsNv+++r+++ a++  ++++k++k+++i+p+yae++k +
     CTQ28655.1 204 ARYLSLIGGTCLSFYDWYCDLPPASP--MTWGEQTDVPESA----DWYNSSYIIAWGSNVPQTRTPD-AHFFTEVRYKGTKTVAITPDYAEIAKLC 292
                    **************************..8999*********....**********************.**************************** PP

                    SEEEEEHTTTHHHHHHHHHHHHHHCCCCTCHHHHHHEECHHHCCCCCCCEECCS.......................................... CS
  Molybdopterin 159 dewlaikpgtdaalalamghvilqelkvdkeflrkytygkeetdmpllvtleee.......................................... 212
                    d+wla+k+gtdaa+alamghv+l+e++ dk+++++++y++++tdmp+lv+lee+                                          
     CTQ28655.1 293 DLWLAPKQGTDAAMALAMGHVMLREFHLDKPSQYFTDYVRRYTDMPMLVMLEERdgyyaagrtlrasdlvdslgqennpewktvafdekgdmtvpn 388
                    ************************************************************************************************ PP

                    ................................................................................................ CS
  Molybdopterin 213 ................................................................................................ 212
                                                                                                                    
     CTQ28655.1 389 gslgfrwgdkgkwnleqrdgktgeeielrlsllgshdevanvgfpyfggegsehfnkvdlenillhklpakrlqladgstalvttvydltmanygl 484
                    ************************************************************************************************ PP

                    ...........................HHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHHHHHHHHCTHCSSTTCEEEEESS CS
  Molybdopterin 213 ...........................tgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyravinLallvgnvgqpgGgwahlnG 281
                                               tg++++ ++r+are+a+na+kt+g+smiivGaglnh++++d++yr++in+++++g+vgq+gGgwah++G
     CTQ28655.1 485 erglnddncaagydevkaytpawaekiTGVSRAHIIRTAREFADNADKTHGRSMIIVGAGLNHWFHLDMNYRGLINMLIFCGCVGQSGGGWAHYVG 580
                    ************************************************************************************************ PP

                    .....................................................................................CTTHHHCHHHH CS
  Molybdopterin 282 .....................................................................................qlilagaaekv 292
                                                                                                         +l +a++a k+
     CTQ28655.1 581 qeklrpqtgwqplafaldwqrparhmnstsyfynhssqwryetvtaqellspmadksrysghlidfnvraermgwlpsapqlgvnPLRIADEAKKA 676
                    ************************************************************************************************ PP

                    TCCTTCCCCCCCTTHHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEESH.....................HHHHSTTSCCCHCHHHCSSE CS
  Molybdopterin 293 galpvllsvkslkeekikfaaeqpgnlgnfprnlfversnllkssgkkvlyllgn....................npevdhadenevekalekldl 368
                    g+ pv+++vkslke++i+faaeqp+n++n+prnlf++rsnll+ssgk+++y+l++                    ++ev++ d+++     +kldl
     CTQ28655.1 677 GMTPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYllgtengiqgkdlgkqggvkPEEVEWRDNGLD----GKLDL 768
                    ***************************************************************************************....***** PP

                    EEEEESCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEE.EEESSS-STT-BEHHHHHHHHHHH CS
  Molybdopterin 369 vvvldgrltstalyaDiiLPaatwyEkedlytndegrfqh.lkqavsppgeaksdwkIlkaLakk 432
                    vv+ld+rl+st+ly+Di+LP+atwyEk+d++t+d+++f+h l++av+p++e+ksdw+I+k +akk
     CTQ28655.1 769 VVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHpLSAAVDPAWESKSDWEIYKGIAKK 833
                    ***************************************************************97 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.018        81      29      74 ..     447     493 ..     437     518 .. 0.76
   2 !   79.6   0.0   3.6e-26   1.6e-22       1     107 [.    1087    1202 ..    1087    1206 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.018
                      S.-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEE CS
  Molydop_binding  29 p.evveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvv 74 
                      + e ++++   A++l ++dG +  v++ +  + ++  ++ +++ + +
       CTQ28655.1 447 DlENILLHKLPAKRLQLADGSTALVTTVYDLTMANYGLERGLNDDNC 493
                      44789********************9987766666655555555555 PP

  == domain 2  score: 79.6 bits;  conditional E-value: 3.6e-26
                       EEEEEE-BTTBSTTTT.TCGCCHHHHCSSS-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC......... CS
  Molydop_binding    1 lrLitgrsldqlhsqt.rtrpvlrlakpepevveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwwe......... 82  
                       l + t+++++ +hs++ ++  +l l++ +p  v+++++dA+ lGi+d+d++ev++++G++++ra+v++rv+ G+  m++++++         
       CTQ28655.1 1087 LNFLTPHQKWGIHSTYsDNLLMLTLSRGGP-IVWMSEADAKDLGIEDNDWIEVFNANGALTARAVVSQRVPAGMTMMYHAQERivnlpgsei 1177
                       5689************99999******999.**************************************************99********* PP

                       .....S-GHCTS--SCSTTT--CST CS
  Molydop_binding   83 agekggnaNaltddatdplsgtpef 107 
                       +g++gg  N++t+   +p++ +  +
       CTQ28655.1 1178 TGQRGGIHNSVTRITPKPTHMIGGY 1202
                       ************9999999887666 PP

>> Nitr_red_alph_N  Respiratory nitrate reductase alpha N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   4.0     2e-20   9.1e-17       1      38 []       3      40 ..       3      40 .. 0.99

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 2e-20
  Nitr_red_alph_N  1 hlldrlrffrkkkekfadgHgetteedReWEdaYRrRW 38
                     ++ldr+r+f++k e+fadgHg++ + +R+WEd+YR+RW
       CTQ28655.1  3 KFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRW 40
                     59************************************ PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   2.8e-06     0.013      10      54 ..      53     104 ..      44     105 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.8e-06
                     SBTT--EEEEEEETTEEE.......EEEE-TTSTTTTT---HHHHTCHHCCC CS
  Molybdop_Fe4S4  10 yCgvgCglevhvkdgkiv.......kvegdpdhpvnegrlCvKGrtllervy 54 
                     +C+ +C+ +++vk+g ++       + ++ pd p  e r C++G++   ++y
      CTQ28655.1  53 NCTGSCSWKIYVKNGLVTwetqqtdYPRTRPDLPNHEPRGCPRGASYSWYLY 104
                     8*****************5555555555556666666********9877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 8050.89
//
Query:       CTQ28656.1  [L=462]
Description: nitrate/nitrite transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-14   53.8  62.9    1.4e-14   53.8  62.9    2.1  2  MFS_1         Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8  62.9   7.9e-19   1.4e-14       2     353 .]      45     422 ..      42     422 .. 0.79
   2 ?   -0.6  15.3     0.028     5e+02      84     170 ..     350     455 ..     345     461 .. 0.71

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 7.9e-19
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa....sslw.lllvlrvlq 95 
                 ll+af++ + +s+++++l    +  ++++ +++ +l++l al  a++ +p+++++  fG rr+  ++  ++++ +++l fa    s+ + ++++  +l+
  CTQ28656.1  45 LLLAFCVWMLFSAVAVNLN---KVGFQFTTDQLFMLTALPALSGALLRVPYAFMVPLFGGRRWTAFSTGIMIVPCVWLGFAvqdtSTPFsIFVIISLLC 140
                 5677777777777777777...4456677888889************************99999999999999978888866788555559******** PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...................Wravfyilaivsllafvlfllllpee 175
                 G++ ga f++++a i+  fpk ++g a+g+ ++  ++G+ +  l+++l++ s++                    + + +i  ++++++ + ++++++ +
  CTQ28656.1 141 GFA-GANFASSMANISFFFPKAKQGGALGVNGGLGNMGVSVMQLVAPLVV-SISifavfggngseqpdgsmlyLENAAWIWVPFLIIFTL-AAWFFMND 236
                 **9.8******************************************998.5566889999************9999********99877.78999999 PP

       MFS_1 176 pperkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrr 274
                  +++k + ++++          p    +lk+ +lw +++ l+l++fg ++ ++  +  + +   ++  ++++ +  ++ ++ga ++ ++g++sdrlg  
  CTQ28656.1 237 LSASKASLSEQL----------P----VLKRLHLW-IMALLYLATFGSFIGFSAGFA-MLSKTQFP-DVQILHYAFFGPFIGALARSMGGAISDRLGGT 318
                 999999999888..........6....78888999.555555555555554444444.37888888.499999999999999999************** PP

       MFS_1 275 rrlllallllllaalglallavt......ssavllll......vlvl..iGfglgfv....fpsllalasdlappeeag...............tasgl 340
                 r +l++++++++++++l+l+ +t             +      ++++  +G+g++ +    ++++  l++d +  +++g               +a+g+
  CTQ28656.1 319 RVTLVNFVVMAVFCALLFLTLPTngqggnF------IaffavfMVLFltAGLGSASTfqmiSVIFRKLTMDRV--KAQGgseaqamreaatdtaAALGF 409
                 ***********************7776542......2222333333335777777773444444555555555..333344555555566666699999 PP

       MFS_1 341 fntagslggalgp 353
                 ++ +g++gg++ p
  CTQ28656.1 410 ISAIGAIGGFFIP 422
                 9999999999877 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.028
       MFS_1  84 slw.lllvlrvlqGlgagalfpagaaliadwfpke.................ergraigllsagfslGailgpllggllasslg.Wravfyilaivsll 163
                  ++ +++vl + +Glg+++ f ++ ++++++++++                 + + a+g++sa  ++G  + p + g+ +++ g   +++ ++ ++++ 
  CTQ28656.1 350 AFFaVFMVLFLTAGLGSASTFQMISVIFRKLTMDRvkaqggseaqamreaatDTAAALGFISAIGAIGGFFIPKAFGISLDLTGsPAGAMKVFLVFYIA 448
                 47779*****************************98999999977777777777777777777777777777666666665555544445555555555 PP

       MFS_1 164 afvlfll 170
                 ++v+ ++
  CTQ28656.1 449 CVVITWA 455
                 5444334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3289.23
//
Query:       CTQ28657.1  [L=592]
Description: sensory histidine kinase in two-component regulatory system with NarL [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-18   67.2   2.9    1.9e-18   66.7   0.6    2.6  2  HisKA_3      Histidine kinase
    2.8e-11   43.9   0.8    9.8e-11   42.2   0.1    2.4  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    6.4e-11   42.5   1.3    1.8e-10   41.1   0.5    2.2  2  HAMP         HAMP domain
    2.3e-09   37.3   3.5    2.3e-09   37.3   3.5    4.0  5  PilJ         Type IV pili methyl-accepting chemotaxis transdu
     0.0001   22.2   0.0    0.00027   20.9   0.0    1.7  1  HATPase_c_2  Histidine kinase-like ATPase domain
    0.00064   19.6   0.0      0.002   18.0   0.0    1.8  2  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
     0.0062   16.8   1.2      0.023   14.9   0.2    2.2  2  NES_C_h      Nicking enzyme C-terminal middle helical domain
  ------ inclusion threshold ------
        5.7    7.5  11.0        5.3    7.6   5.6    3.2  2  Spectrin     Spectrin repeat


Domain annotation for each model (and alignments):
>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.6   8.5e-22   1.9e-18       1      64 [.     390     453 ..     390     457 .. 0.97
   2 ?   -3.0   0.1       4.8   1.1e+04      43      52 ..     501     510 ..     493     531 .. 0.62

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 8.5e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
     HisKA_3   1 ERariARELHDsvgqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrllhnLr 64 
                 ERa iARELHDs++qsLs +k+q+++++++ ++ p + ++ l +i++ ++++ +++R+ll+++r
  CTQ28657.1 390 ERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPTESRQLLGQIRNELNTSWAQLRELLTTFR 453
                 9**************************************************************9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.8
                 HHHHHHHHHH CS
     HisKA_3  43 reieelarea 52 
                 + ++e++++a
  CTQ28657.1 501 QIAREALSNA 510
                 3333333333 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       4.5     1e+04      75      97 ..      26      49 ..      25      53 .. 0.77
   2 !   42.2   0.1   4.4e-14   9.8e-11       4     110 ..     497     585 ..     494     588 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.5
                SH.HHHHHHHHHHHTTTEEEEEEE CS
   HATPase_c 75 Gl.GlsivkklvelmgGeiwvese 97
                G+ G++i+ +lv+ ++G+ + +++
  CTQ28657.1 26 GVaGMAISARLVNGVQGSAHAINK 49
                555999****99988888877655 PP

  == domain 2  score: 42.2 bits;  conditional E-value: 4.4e-14
                 HHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEE CS
   HATPase_c   4 krLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGt 102
                 ++L qi +++++Na+k+ ++a+e++v+++++++++++ v DnG+G+p                       +++Gl i++  ++ ++G+ +v+ ++++Gt
  CTQ28657.1 497 IHLLQIAREALSNALKH-ASATEVTVTVSQRDNQVRLVVADNGRGVPDHAER-----------------SNHYGLIIMRDRAQSLRGDCQVRRRETGGT 577
                 7899*************.99*********8779**************94444.................6789*******9998*************** PP

                 EEEEEEES CS
   HATPase_c 103 tftftlpl 110
                 ++++t+  
  CTQ28657.1 578 EVIVTFIP 585
                 *9996544 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.5   3.3e+03      37      48 ..     134     145 ..     121     147 .. 0.75
   2 !   41.1   0.5   7.8e-14   1.8e-10       1      52 [.     173     224 ..     173     225 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHH CS
        HAMP  37 iGeLarafNaMl 48 
                 i++L+ af++  
  CTQ28657.1 134 IDQLVTAFDHTT 145
                 788888888766 PP

  == domain 2  score: 41.1 bits;  conditional E-value: 7.8e-14
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 +l  r+lrP ++L + ar++++ d+++r  +sgr+E+++L+ a+N+M+++L 
  CTQ28657.1 173 WLRARLLRPWKQLLSMARAVSQRDFTQRAHISGRNEMATLGMALNNMSEELA 224
                 7889*********************************************995 PP

>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   3.5     1e-12   2.3e-09       5     107 ..      39     130 ..      36     137 .. 0.74
   2 ?   -1.5   0.1       1.1   2.4e+03      40      64 ..     216     240 ..     181     248 .. 0.66
   3 ?    1.8   1.1      0.11   2.4e+02      41      83 ..     356     400 ..     340     427 .. 0.74
   4 ?    0.4   0.1      0.29   6.5e+02      40      72 ..     424     456 ..     409     475 .. 0.56
   5 ?   -3.4   0.0       4.3   9.7e+03      80      95 ..     499     514 ..     485     533 .. 0.47

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1e-12
        PilJ   5 qsegdaaaINvAGslRMqsqRlakeallaaagaydaaearaqlretiaqfdrtlaalrlgdpapgllvpaeavraqleaveqlWqelkkpa.....eaa 98 
                   +g+a+aIN AGslRMqs+Rl        a++       ++ ++ +a++ +t+ +++l+++a++          ql+a++q Wq ++ p      ++a
  CTQ28657.1  39 GVQGSAHAINKAGSLRMQSYRLL-------AAI----PLNENDQKLVADMTATVFSPELQNSARRD-----GQEIQLKALQQYWQLALAPGmqravNQA 121
                 679********************.......223....2445556789****************955.....4456899999999988888754333555 PP

        PilJ  99 laqqddaay 107
                  ++qd a  
  CTQ28657.1 122 EVAQDVADF 130
                 555555555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
        PilJ  40 aaearaqlretiaqfdrtlaalrlg 64 
                  +  +++l+e+ a+++r++++ + g
  CTQ28657.1 216 LNNMSEELAESYAVLERRVQEKTAG 240
                 3555677777777777777665555 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.11
        PilJ  41 aearaqlretiaqfdrtlaalrlgdpapgllvpae..avraqlea 83 
                   +++ ++  ++q+  tla  r ++++++l v++e  ++ ++l++
  CTQ28657.1 356 HDQQQLVDTLVEQLTSTLALDRHQEKQQQLIVMEEraTIARELHD 400
                 4567788888999******************99999966655543 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.29
        PilJ  40 aaearaqlretiaqfdrtlaalrlgdpapgllv 72 
                  +e+r+ l + ++++++++a+lr+  ++ +l+ 
  CTQ28657.1 424 PTESRQLLGQIRNELNTSWAQLRELLTTFRLQL 456
                 455566666666666666666665444444443 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 4.3
        PilJ  80 qleaveqlWqelkkpa 95 
                  l+  ++  ++++k+a
  CTQ28657.1 499 LLQIAREALSNALKHA 514
                 3444444444444444 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.2e-07   0.00027      25      83 ..     492     547 ..     485     582 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.2e-07
  HATPase_c_2  25 seelldeirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpg.fdpetl 83 
                  ++ ++ ++   + Ea++Na +ha       +v+v++++++++++++vaD+G+g  d +++
   CTQ28657.1 492 PSHQAIHLLQIAREALSNALKHASA----TEVTVTVSQRDNQVRLVVADNGRGvPDHAER 547
                  5566667777899***********8....78999999****************6665543 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.1   4.6e+03      90     114 ..     362     386 ..     334     402 .. 0.51
   2 !   18.0   0.0   8.9e-07     0.002       9      48 ..     505     544 ..     502     572 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.1
  HATPase_c_3  90 vitkkegesstltldvdkidkenek 114
                  v t  e+ +stl ld+++ ++++  
   CTQ28657.1 362 VDTLVEQLTSTLALDRHQEKQQQLI 386
                  3344444444555555555444433 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 8.9e-07
  HATPase_c_3   9 elvdNsld.AdaenvkievnknrgktgeivieDdGkGmsee 48 
                  e + N+l  A+a++v+++v++++ ++ ++v+ D+G G++  
   CTQ28657.1 505 EALSNALKhASATEVTVTVSQRD-NQVRLVVADNGRGVPDH 544
                  668899988************86.799***********876 PP

>> NES_C_h  Nicking enzyme C-terminal middle helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.55   1.2e+03      29      62 ..     175     208 ..     160     245 .. 0.78
   2 !   14.9   0.2     1e-05     0.023       1      87 [.     353     439 ..     353     453 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.55
     NES_C_h  29 kkrmLknWknStlikkavgedktkqleeiekqee 62 
                 + r L  Wk+   + +av++    q  +i+  +e
  CTQ28657.1 175 RARLLRPWKQLLSMARAVSQRDFTQRAHISGRNE 208
                 7789999***999999999998888888875444 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1e-05
     NES_C_h   1 hfSpkeKkqlselakelktfvnlesieekkrmLknWknStlikkavgedktkqleeiekqeelleeAdellnkeadrlveklYpelD 87 
                 h+S ++++ + +l  +l   + l+  +ek+++L   ++ ++i +++++ + + l+ ++ q + l+   + l +e+ +l+ +   el 
  CTQ28657.1 353 HLSHDQQQLVDTLVEQLTSTLALDRHQEKQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPTESRQLLGQIRNELN 439
                 7999**************************************************************999999999999988776664 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.38   8.6e+02      61     105 .]     217     243 ..     210     257 .. 0.61
   2 ?    7.6   5.6    0.0024       5.3      42     104 ..     398     457 ..     354     458 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.38
                 HHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  61 nelaeklldeghsaseeieerleelnerWeeLkelaaerkqkLee 105
                 n ++                  eel e ++ L+++++e+ + Le+
  CTQ28657.1 217 NNMS------------------EELAESYAVLERRVQEKTAGLEQ 243
                 4444..................55555555555555555555543 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0024
                 HHHHHHHHHHHHHHHHHHHHHHHHHH.HHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  42 khkaleaelaaqqervkalnelaekl.ldeghsaseeieerleelnerWeeLkelaaerkqkLe 104
                  h+ + + l+ ++ +v  l+ ++++l +++     + + +  +eln+ W++L+el+ + + +L 
  CTQ28657.1 398 LHDSIAQSLSCMKMQVSCLQMQGDALpTES----RQLLGQIRNELNTSWAQLRELLTTFRLQLT 457
                 68888888999999999999******6666....7********************999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1213  (0.0676558); expected 358.6 (0.02)
Passed bias filter:                      747  (0.0416643); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 4460.32
//
Query:       CTQ28658.1  [L=216]
Description: DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-31  106.5   0.1    1.3e-30  105.9   0.1    1.3  1  Response_reg  Response regulator receiver domain
    3.9e-23   80.7   0.4    8.7e-23   79.6   0.4    1.6  1  GerE          Bacterial regulatory proteins, luxR family
    4.2e-10   39.2   0.5    8.4e-10   38.2   0.1    1.7  2  Sigma70_r4_2  Sigma-70, region 4
    4.8e-07   29.2   0.2    1.7e-06   27.5   0.2    2.0  1  Sigma70_r4    Sigma-70, region 4
    7.8e-06   25.6   0.3    3.7e-05   23.4   0.0    2.2  2  HTH_38        Helix-turn-helix domain
    0.00011   21.7   0.1     0.0003   20.3   0.1    1.8  1  HTH_24        Winged helix-turn-helix DNA-binding
    0.00019   21.1   0.1    0.00053   19.7   0.0    1.9  2  HTH_23        Homeodomain-like domain
     0.0073   16.4   0.1      0.025   14.7   0.0    2.0  2  HTH_28        Helix-turn-helix domain
     0.0089   16.1   0.1      0.027   14.5   0.0    1.9  2  HTH_20        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.016   15.2   0.0      0.036   14.1   0.0    1.5  1  HTH_7         Helix-turn-helix domain of resolvase
      0.025   14.4   0.0      0.068   13.1   0.0    1.7  1  MarR_2        MarR family
      0.039   14.0   0.0       0.12   12.4   0.0    1.8  1  HTH_29        Winged helix-turn helix
      0.047   13.3   0.4      0.081   12.6   0.4    1.4  1  CENP-B_N      CENP-B N-terminal DNA-binding domain
      0.059   13.3   0.2       0.23   11.4   0.2    2.1  1  HTH_11        HTH domain
       0.12   12.8   0.2       0.32   11.5   0.1    1.7  2  HTH_40        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.1   1.1e-33   1.3e-30       1     111 [.       9     120 ..       9     121 .. 0.98

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 1.1e-33
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   +l++dD+p++r++++ql+    ++++++ea++g++ +el+++ ++dlillD+nmpgm+Gle+l+++re++ + +v++++  + eed+v alk gad+
    CTQ28658.1   9 ILLIDDHPMLRTGVKQLISmAPDIQVIGEASNGAQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRVVVFSVSNHEEDVVTALKRGADG 105
                   89*****************889*************************************************************************** PP

                   EEESSG-HHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkal 111
                   +l K+++pe+Llkal
    CTQ28658.1 106 YLLKDMEPEDLLKAL 120
                   ************998 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.4   7.3e-26   8.7e-23       2      56 ..     155     209 ..     154     210 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 7.3e-26
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                 +L++REr++L+l+a+G+ nk+IA++l+i e TVkvh+++++kK+++ksrve++++
  CTQ28658.1 155 QLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVW 209
                 7***************************************************987 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         7   8.3e+03      11      22 ..       1      12 [.       1      13 [. 0.67
   2 !   38.2   0.1     7e-13   8.4e-10       8      54 .]     153     198 ..     151     198 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7
                  S-HHHHHHHHHH CS
  Sigma70_r4_2 11 Lperqreifllr 22
                  +++++r+ +ll+
    CTQ28658.1  1 MSQQERATILLI 12
                  467778777776 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 7e-13
                   HTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   8 laeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +++L++r+r i+ l+  +gl+ k IA++l+i+e+tVk +++  +kk+
    CTQ28658.1 153 ISQLTPRERDILKLI-AQGLPNKMIARRLDITESTVKVHVKHMLKKM 198
                   789***********8.6************************999997 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.2   1.4e-09   1.7e-06       2      49 ..     153     199 ..     153     200 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.4e-09
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkLR 49 
                 +++L++rer++l+l   +gl+ + I++rl+i++++V+ + k  l+k++
  CTQ28658.1 153 ISQLTPRERDILKLIA-QGLPNKMIARRLDITESTVKVHVKHMLKKMK 199
                 579***********95.88999************************97 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.4   1.7e+03       5      13 ..       1       9 [.       1      11 [. 0.84
   2 !   23.4   0.0   3.1e-08   3.7e-05       3      41 ..     154     191 ..     152     193 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.4
      HTH_38  5 LsleeReeI 13
                +s +eR +I
  CTQ28658.1  1 MSQQERATI 9 
                689***999 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 3.1e-08
      HTH_38   3 khLsleeReeIerllaeGlslreIArrLgrspsTIsREl 41 
                 ++L++ eR  I +l+a+Gl ++ IArrL+   sT+  ++
  CTQ28658.1 154 SQLTPRER-DILKLIAQGLPNKMIARRLDITESTVKVHV 191
                 79******.*************************97555 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   2.5e-07    0.0003       3      44 ..     158     197 ..     156     197 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.5e-07
      HTH_24   3 etdrkILelLqknprisqreLAerlglSpstvnrrlkrLeee 44 
                   +r+IL+l+ +  +++++ +A+rl+++ stv+ ++k + ++
  CTQ28658.1 158 PRERDILKLIAQ--GLPNKMIARRLDITESTVKVHVKHMLKK 197
                 57899*******..***********************99875 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       7.1   8.4e+03       4      12 ..       3      11 ..       2      11 .. 0.80
   2 !   19.7   0.0   4.5e-07   0.00053      10      35 ..     163     188 ..     158     206 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 7.1
      HTH_23  4 ereRlrill 12
                 +eR+ ill
  CTQ28658.1  3 QQERATILL 11
                689999986 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 4.5e-07
      HTH_23  10 illllaeGlsvreIAreLgvsrrTvy 35 
                 il+l a+Gl+ + IAr+L+++++Tv 
  CTQ28658.1 163 ILKLIAQGLPNKMIARRLDITESTVK 188
                 99***********************7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         5     6e+03       3      13 ..     117     127 ..     117     133 .. 0.81
   2 !   14.7   0.0   2.1e-05     0.025       4      34 ..     162     192 ..     161     196 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5
      HTH_28   3 leiikllaaGh 13 
                 l++++++aaG+
  CTQ28658.1 117 LKALQQAAAGE 127
                 68999999986 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2.1e-05
      HTH_28   4 eiikllaaGhsvreaArelgisrrtvyrWik 34 
                  i+kl+a+G + + +Ar+l i+++tv++ +k
  CTQ28658.1 162 DILKLIAQGLPNKMIARRLDITESTVKVHVK 192
                 699***********************99887 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         3   3.6e+03      26      35 ..     134     143 ..     115     157 .. 0.50
   2 !   14.5   0.0   2.3e-05     0.027      11      49 ..     159     195 ..     156     200 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3
                 -HHHHHHHHT CS
      HTH_20  26 taselaerld 35 
                   + la+ l+
  CTQ28658.1 134 LTPVLAASLR 143
                 3344555554 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHH CS
      HTH_20  11 vRrrilraLaraegltaselaerldlskntlsyHLrvLe 49 
                   r+il+++  a+gl  + +a+rld++ +t+  H++ + 
  CTQ28658.1 159 RERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHML 195
                 5699*****..************************9875 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     3e-05     0.036      14      39 ..     163     188 ..     156     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3e-05
                 GGSSTTTT--STTTSSSS---SSSS- CS
       HTH_7  14 vvkLleeGisiskIAkevnisRsTvY 39 
                 ++kL+++G + + IA++++i+ sTv+
  CTQ28658.1 163 ILKLIAQGLPNKMIARRLDITESTVK 188
                 799*********************95 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.7e-05     0.068       2      47 ..     155     196 ..     154     197 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.7e-05
                 T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2   2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLva 47 
                  ltp ++++L  ++ +    l  + +arrl+++ s+v  ++k + +
  CTQ28658.1 155 QLTPRERDILKLIAQG----LPNKMIARRLDITESTVKVHVKHMLK 196
                 79***********999....6779*****************99876 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0    0.0001      0.12       4      29 ..     163     187 ..     161     193 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
      HTH_29   4 allllaeGvstvsqiAkllglsrrtv 29 
                 +l l+a+G++  ++iA++l+++++tv
  CTQ28658.1 163 ILKLIAQGLP-NKMIARRLDITESTV 187
                 799******9.**************9 PP

>> CENP-B_N  CENP-B N-terminal DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   6.8e-05     0.081       6      45 ..     155     193 ..     151     203 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.8e-05
                 S--HHHHHHHHHHHHCTT-HHHHHHHHT--CCHHHHHHHC CS
    CENP-B_N   6 sLTlreKievIqrleegeSkaelarrfnvpestlsdilkn 45 
                 +LT+re  ++ +++ +g   + +arr+ + est+   +k+
  CTQ28658.1 155 QLTPRER-DILKLIAQGLPNKMIARRLDITESTVKVHVKH 193
                 89***97.9*************************988887 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00019      0.23       1      39 [.     159     194 ..     159     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
      HTH_11   1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaL 39 
                 R+++il+l+  a+g ++ + +A++L+++++tv  ++k +
  CTQ28658.1 159 RERDILKLI--AQG-LPNKMIARRLDITESTVKVHVKHM 194
                 889999999..666.999**************9999876 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.6   9.1e+03      51      61 ..     114     124 ..      92     139 .. 0.58
   2 ?   11.5   0.1   0.00027      0.32       6      41 ..     164     199 ..     160     214 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.6
      HTH_40  51 eeeekeIeeai 61 
                 e+  k++++a 
  CTQ28658.1 114 EDLLKALQQAA 124
                 33334444443 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00027
      HTH_40   6 lelleeglsieeIAkerglkesTIegHLaelieege 41 
                 l+l+ +gl  + IA++  ++esT+  H+ +++++ +
  CTQ28658.1 164 LKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 199
                 68999***********************99998843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1848.69
//
Query:       CTQ28659.1  [L=460]
Description: putative adhesin/invasin [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.9e-100  333.6   2.0    1.1e-99  333.3   2.0    1.1  1  IAT_beta  Inverse autotransporter, beta-domain


Domain annotation for each model (and alignments):
>> IAT_beta  Inverse autotransporter, beta-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.3   2.0  6.2e-104   1.1e-99       2     276 .]      59     335 ..      58     335 .. 0.98

  Alignments for each domain:
  == domain 1  score: 333.3 bits;  conditional E-value: 6.2e-104
    IAT_beta   2 sakqigellsed...sakeaaksliksaaesevnsevekwLsqfgtarvelnvdsegslkgssldlLlplydnkesllFsQlglrrkddrttvNlGlGl 97 
                 +ak++ge++++d   +a+e+a+ ++ s++ +ev++++e+wLs++g+a+v+l vd+eg+++gs+ ++++pl+dn+++l+++Q++++r++++ ++N+GlG+
  CTQ28659.1  59 VAKKFGEASMSDnglTAGEQAQLFAISKIGNEVSHQLESWLSPWGNANVDLLVDKEGKFTGSKGSWFVPLQDNDRYLTWNQYSVTRREHDLVGNIGLGQ 157
                 68999999999768899999******************************************************************************* PP

    IAT_beta  98 RrfldewmlGaNaFlDydltsshsRlglGaEawkdylkLsaNyYirlsgwkkskdledyeerpanGyDvraegylPaypqlgaklkyeqYfGdeVdlfd 196
                 R+++++w+lG+N+F+D+ l++s +R+++GaEaw +yl+LsaNyY++l +w+  + ++++e+r+a GyDv+a+++lP+y+++++++++eqYfGd+Vdlf+
  CTQ28659.1 158 RWRVGGWLLGYNSFYDKVLSESLARGSVGAEAWGEYLRLSANYYHPLGDWQLRD-NQTQEQRMAAGYDVTAQARLPFYQHINTSVSVEQYFGDSVDLFH 255
                 **************************************************9876.89****************************************** PP

    IAT_beta 197 kgkrqkdpsavtlglnytpvPlvtleaeekqgksgksdtqlnlqlnyrlGvplskqldpdavaasrslagsrydlVeRnn 276
                 +g+ +++p av++glnytpvPlvt++a++kqg++g s+++++l+lnyr+Gvpl++ql +d+va s+sl+gsr d  eR+n
  CTQ28659.1 256 SGTGYHNPVAVSVGLNYTPVPLVTVTAKHKQGENGVSQNNVGLKLNYRFGVPLKQQLAADEVAISNSLRGSRFDSPERDN 335
                 ******************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3537.62
//
Query:       CTQ28660.1  [L=866]
Description: Nitrate reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-79  267.8   0.0    2.5e-79  267.3   0.0    1.2  1  Molybdopterin    Molybdopterin oxidoreductase
    3.4e-26   91.4   0.1    7.2e-26   90.4   0.1    1.6  1  Molydop_binding  Molydopterin dinucleotide binding domain
    3.3e-19   68.6   1.3    3.3e-19   68.6   1.3    1.8  2  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain
    1.9e-10   40.9   2.0      4e-10   39.9   2.0    1.6  1  Fer2_BFD         BFD-like [2Fe-2S] binding domain


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.3   0.0   5.5e-83   2.5e-79      18     429 ..      67     472 ..      58     475 .. 0.91

  Alignments for each domain:
  == domain 1  score: 267.3 bits;  conditional E-value: 5.5e-83
                    EE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHH....CHHCCCCCTTTS-SS-CCGG CS
  Molybdopterin  18 vrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppasaq....qtigsdsrsnyessnpledl 109
                    ++v W++Al++ aa+l+++i+++gp++va+++sg+l+ +e +++++kl++ ++g   +++d++ +l+++sa+    +++g+d +      ++  d+
     CTQ28660.1  67 QQVAWPQALAETAARLRQIIDQHGPQAVAFYASGQLL-TEDYYAANKLMKGFIG--AANIDTNSRLCMSSAVtgykRAFGADVV-P----CSYDDV 154
                    579**********************************.****************..9**************9999999999955.4....4445** PP

                    GG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC..-EEEEECSSB-HCGGGCSEEEEEHTTTHHHHHHHHHHHHHHCCCCTCHHHHHHEECHHHCCC CS
  Molybdopterin 110 ensdliilwGsNvreerpilnarirkaalkkk..akvivigpryaellkfadewlaikpgtdaalalamghvilqelkvdkeflrkytygkeetdm 203
                    ensdl++l+GsN ++ +p+l  r+ +a +  +  +++++i+pr +++ + ad +la+ pg+d+ l++++ +++ + +     f +  +   +   +
     CTQ28660.1 155 ENSDLVVLVGSNAAWAHPVLFQRLAQAKRD-NprLRIVAIDPRRTATCEIADRHLALAPGSDGGLFAGLLNALAEAGACVDGFRDGPQALAAARGW 249
                    ********************6666665555.56*************999****************9999999999998877455544444444333 PP

                    CCCCEECCSHHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHHHHHHHHHCTHCSSTTCEEEEESSCTTHHHCHHHHTCCTTCC CS
  Molybdopterin 204 pllvtleeetgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyravinLallvgnvgqpgGgwahlnGqlilagaaekvgalpvll 299
                     +      ++++ ++ +a+ +  + r+++++   ++ ++++g+n++++g++ ++a+in++l+ g++g+ g+g+++l+Gq++++g +++vg l+++l
     CTQ28660.1 250 DV-----ARVAAFCGLPADEVAGFYREFIAAPR-AITLYTMGINQSASGSDKCNAIINVHLASGKYGRRGCGPFSLTGQPNAMG-GREVGGLATML 338
                    33.....447799***************98766.**************************************************.999****9999 PP

                    CCCCCTT...HHHHHCCCTTTCSTSS--ECGGCHHHHHHTTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEESCS.SHHHHTSSEEEEBE- CS
  Molybdopterin 300 svkslke...ekikfaaeqpgnlgnfprnlfversnllkssgkkvlyllgnnpevdhadenevekalekldlvvvldgrl.tstalyaDiiLPaat 391
                     +++       +  ++ ++ + l ++p+ ++ve   +++++++k+++++g+np+v+ +d + v++al  + lv+v+d+   t+t ++a+i +Pa +
     CTQ28660.1 339 AAHMDFVpddLQRLARFWGTERLAQTPGLTAVELFAAIGRGEVKAVWIMGTNPVVSLPDSHAVSQALAACPLVIVSDVAAqTDTGRFAHIRFPALA 434
                    988876679999999********************************************************************************* PP

                    CCGSEEEEE-TTSEEEEEEESSS-STT-BEHHHHHHHH CS
  Molybdopterin 392 wyEkedlytndegrfqhlkqavsppgeaksdwkIlkaL 429
                    w Ek++++tn+e+r+++ + + +ppgeak dw+I+  +
     CTQ28660.1 435 WGEKNGTVTNSERRISRQRSFLPPPGEAKADWWIIARV 472
                    **********************************9876 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.1   1.6e-29   7.2e-26       1     110 [.     570     680 ..     570     681 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 1.6e-29
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS.-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC.....S-GHCT CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpep.evveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwweagekggnaNal 93 
                      l+L++gr +dq+h++trt+ v+rl ++   ++ve+ p+dA ++ +  + l +++sr+G ++++++++e+ rpG++f+p++w++++ ++g +N+l
       CTQ28660.1 570 LILNSGRIRDQWHTMTRTGAVPRLMQHIAePMVEVAPQDAVRYQLPADGLARIWSRHGVMVAKVAISEGQRPGSLFVPMHWNNQFARQGRVNNL 663
                      79*************************999**************************************************************** PP

                      S--SCSTTT--CSTT-E CS
  Molydop_binding  94 tddatdplsgtpefksv 110
                       ++ tdp+sg+pe k++
       CTQ28660.1 664 LAAVTDPYSGQPESKQA 680
                      *************9986 PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   1.3   7.3e-23   3.3e-19       1      52 [.       1      52 [.       1      54 [. 0.96
   2 ?   -4.6   1.5         4   1.8e+04      11      16 ..     844     849 ..     843     849 .. 0.89

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 7.3e-23
                    SEEEEEE-SSBTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHTCHHC CS
  Molybdop_Fe4S4  1 ekvvktaCpyCgvgCglevhvkdgkivkvegdpdhpvnegrlCvKGrtller 52
                    +k+++t+CpyCgvgCg++++v d   v+v+gd++hp+n grlCvKG++l e+
      CTQ28660.1  1 MKTIRTTCPYCGVGCGVLASVDDAGQVSVRGDDQHPANLGRLCVKGAALGET 52
                    89*********************************************99886 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 4
                     BTT--E CS
  Molybdop_Fe4S4  11 CgvgCg 16 
                     Cg++Cg
      CTQ28660.1 844 CGTNCG 849
                     9****8 PP

>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   2.0   8.8e-14     4e-10       1      50 [.     812     860 ..     812     861 .. 0.98

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 8.8e-14
    Fer2_BFD   1 iVCrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiLa 50 
                 iVC+C+gv e  I +ai + g  +v ++  ++k gt+Cg+C+p+++++La
  CTQ28660.1 812 IVCSCFGVGEWSINEAI-ASGCASVGALGGKLKCGTNCGSCVPELNALLA 860
                 8****************.999****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 6254.18
//
Query:       CTQ28661.1  [L=1355]
Description: Nitrite reductase (NAD(P)H) large subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-94  316.0   0.2    3.2e-47  161.2   0.0    2.3  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    4.8e-31  107.2   5.8    1.5e-14   54.3   0.0    4.2  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    5.5e-30  103.4   0.0    1.3e-29  102.2   0.0    1.7  1  Rieske_2       Rieske-like [2Fe-2S] domain
    4.2e-26   90.7   0.0    1.5e-11   44.0   0.0    2.7  2  Rubredoxin_C   Rubredoxin NAD+ reductase C-terminal domain
    6.5e-18   64.7   0.0    1.1e-17   64.0   0.0    1.4  1  NIR_SIR        Nitrite and sulphite reductase 4Fe-4S domain
    2.7e-17   62.9   4.6    3.6e-10   40.0   4.7    2.7  2  Fer2_BFD       BFD-like [2Fe-2S] binding domain
    8.2e-14   51.5   0.0    2.2e-06   27.1   0.0    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    9.2e-11   41.4   0.0    2.3e-10   40.2   0.0    1.7  1  NIR_SIR_ferr   Nitrite/Sulfite reductase ferredoxin-like half
    7.7e-08   32.3  13.7      0.052   13.1   2.5    5.4  6  DAO            FAD dependent oxidoreductase
      3e-07   29.9   9.4      0.036   13.2   2.5    4.0  4  GIDA           Glucose inhibited division protein A
    5.5e-06   25.3   4.3        5.1    5.7   0.8    5.9  7  HI0933_like    HI0933-like protein
    1.4e-05   25.2   3.3       0.06   13.6   0.9    3.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    2.3e-05   23.8   6.7      0.036   13.4   0.1    2.5  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      6e-05   22.5   0.1      0.044   13.1   0.0    2.8  3  Amino_oxidase  Flavin containing amine oxidoreductase
    0.00011   21.5   0.0       0.13   11.3   0.0    3.5  4  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    0.00077   19.5  19.7       0.94    9.5   0.0    6.6  7  NAD_binding_9  FAD-NAD(P)-binding
     0.0035   17.8   3.7        5.9    7.4   0.0    3.7  3  NAD_binding_7  Putative NAD(P)-binding
  ------ inclusion threshold ------
       0.12   11.4  17.5       0.35    9.9   1.5    4.1  4  FAD_binding_2  FAD binding domain
       0.16   11.8   4.7          3    7.7   0.2    2.6  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
       0.31   11.3   2.5         84    3.5   0.1    4.3  5  TrkA_N         TrkA-N domain
       0.33   11.0   2.0        1.8    8.6   0.3    2.4  2  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
       0.39   10.0   8.0        5.8    6.1   3.7    2.6  2  FAD_oxidored   FAD dependent oxidoreductase
        1.5    8.0  10.5        1.3    8.2   0.6    2.4  2  FAD_binding_3  FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   0.0   4.1e-50   3.2e-47       2     279 ..       4     272 ..       3     287 .. 0.92
   2 !  152.4   0.3   1.9e-47   1.5e-44       3     283 ..     404     685 ..     402     705 .. 0.89

  Alignments for each domain:
  == domain 1  score: 161.2 bits;  conditional E-value: 4.1e-50
                  SEEEE--SHHHHHHHHHHHH...HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.......HHHHCHHHHCCCCHCCTCEEEEESCEEEEETE CS
                  xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq...agakvtlvelegtclnggcllskallgvaedaeias.......evvkklnqgielllgeevvkidpgkkkvklek 89 
                  ++vviG G+A++++ ++l +   a + +t+v++e +  ++++ ls+ l+g + +a+i +       ++      g+ l+ ge v ++d +++++ + +
   CTQ28661.1   4 RLVVIGNGMAATRLVQRLVErdpARFAITVVGDEPHPAYNRIQLSPLLAGEKTAAQIPLlpaewytRH------GVCLRSGEAVDEVDIQQRRLRIAE 95 
                  78******************9988*******************************9999876554443......7******99*************43 PP

                  EECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Pyr_redox_2  90 kkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrll.raldkels 186
                        + +  d+lv AtGs+p+++++pG    ++   rtl+++e++     p  +vv+GgG+ GvE Aaal++ g evtl+++++ l+ + +d  ++
   CTQ28661.1  96 ------TWLPWDELVFATGSRPFIPPLPGIDRPQVMPFRTLADVERILAIPGP--AVVIGGGVLGVEAAAALRRHGGEVTLLHRGSGLMaPLTDAFAA 185
                  ......469*********************66666666*********999999..******************************************* PP

                  HHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGC.T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
  Pyr_redox_2 187 aaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDva.g 279
                  ++l+++le++G++++l +++ +id++g    v l dg+++ a  vv+a+Gv+p+++l+  ++g+ +  ++givvd++++++ pgi aiG ++  
   CTQ28661.1 186 DELRQQLEARGIRCVLACRIAAIDADG----VRLADGRVFRAARVVLATGVQPDSRLA-AQSGVLC--QRGIVVDRQMASSLPGISAIGECCeI 272
                  ********************9999999....79*************************.*******..99*********************963 PP

  == domain 2  score: 152.4 bits;  conditional E-value: 1.9e-47
                  EEEE--SHHHHHHHHHHHH....HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH......HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEE CS
                  xxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaq....agakvtlvelegtclnggcllskallgvaedaeias......evvkklnqgielllgeevvkidpgkkkvklekk 90 
                  +v +G G+ G+++ ++       ++++++++++e++  ++++ ls+ ++g +++   ++      e+      giel+lge v +id++++ v +   
   CTQ28661.1 404 LVLVGHGMVGHHFLEQCVSrnlhQQYRIVVFGEERYPAYDRVHLSEYFAGRSAESLSLAagdffiEH------GIELRLGEAVATIDRDARLVRD--- 492
                  578999999999999888878867********************99776655555433358777666......*******99********66666... PP

                  ECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Pyr_redox_2  91 kegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaalaklgkevtlveardrll.raldkels 186
                     ++++i  dklvlAtGs p+ ++ipG    ++++ rtld+ +++  +    k+ vv+GgG+ G+E A al++lg e+ +ve +++l+  +ld   +
   CTQ28661.1 493 --AEGHEIHWDKLVLATGSYPFVPPIPGNDLAGCFVYRTLDDLDRIAAHAAAaKSGVVIGGGLLGLEAANALKQLGLETQVVEFAPNLMaVQLDNGGA 588
                  ..67889**********************99999999**********999997888**********************************99****** PP

                  HHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGC...TEC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx RF
  Pyr_redox_2 187 aaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDva...ggk 281
                  a+l+e++ + Gv v++ +  ++i ++ + l++   dg  + +d+vv+++G+rp+++l+ +   l++ erggi +d ++rt++p++ aiG +a   +  
   CTQ28661.1 589 AMLREKIVALGVGVHTSKATTAIVREADGLRLNFADGGALRTDMVVFSAGIRPQDALA-RGCALQVGERGGIHIDGQCRTSDPDVLAIGECAlwdN-- 683
                  *********************************************************9.999999***************************7541.. PP

                  CS CS
                  xx RF
  Pyr_redox_2 282 gg 283
                  ++
   CTQ28661.1 684 KI 685
                  33 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   1.9e-17   1.5e-14       2      76 ..     143     213 ..     142     218 .. 0.94
   2 ?    1.5   0.0      0.59   4.6e+02      50      71 ..     467     488 ..     453     493 .. 0.85
   3 !   50.7   0.6   2.5e-16   1.9e-13       2      76 ..     546     618 ..     545     625 .. 0.94

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1.9e-17
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsedgvesv 76 
                 +vv+GgG++g+E+A+al+++g +Vt+++r++ l+ +l D+ a+++l+++le++gi+ +l  ++++i+ ++     v
  CTQ28661.1 143 AVVIGGGVLGVEAAAALRRHGGEVTLLHRGSGLMaPLTDAFAADELRQQLEARGIRCVLACRIAAIDADG-----V 213
                 69*****************************************************************665.....3 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.59
                 HHHTTEEEECSEEEEEEEEETT CS
   Pyr_redox  50 lekngievllntkveeiegsed 71 
                 + ++gie++l++ v+ i+ +++
  CTQ28661.1 467 FIEHGIELRLGEAVATIDRDAR 488
                 6689*************98876 PP

  == domain 3  score: 50.7 bits;  conditional E-value: 2.5e-16
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsedgvesv 76 
                  vv+GgG++glE+A+al++lg +++vve +++l+  +lD+  +++l+ek+ ++g+ v++++ +++i+ ++dg   +
  CTQ28661.1 546 GVVIGGGLLGLEAANALKQLGLETQVVEFAPNLMaVQLDNGGAAMLREKIVALGVGVHTSKATTAIVREADG---L 618
                 69*******************************************************************998...3 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.0   1.7e-32   1.3e-29       2     103 ..    1243    1343 ..    1242    1344 .. 0.99

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 1.7e-32
                  EEEEEECCCS-TTB-EEEEETTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS-TTSB-BEE-EEEST CS
    Rieske_2    2 wvpvckledlvketgvaalvdgkqvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecledeevslkvypvrved 98  
                  w++vc l++++++ g+ a ++++q+alfr   e+vyA+dn++p s+anvlsrGl+gd +ge+vv sPlykq+ +L++G  ++ +e++++++pv+ve+
  CTQ28661.1 1243 WQAVCDLDAIPAQAGIGARLGERQIALFRF-GERVYALDNREPGSTANVLSRGLLGDVGGEPVVISPLYKQRIRLRDGWPCDGDEQAVRAWPVKVEN 1338
                  ******************************.9***************************************************************** PP

                  SEEEE CS
    Rieske_2   99 gkvev 103 
                  gkv+v
  CTQ28661.1 1339 GKVWV 1343
                  ****9 PP

>> Rubredoxin_C  Rubredoxin NAD+ reductase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   2.2e-14   1.7e-11       3      67 ..     309     373 ..     308     376 .. 0.94
   2 !   44.0   0.0   1.9e-14   1.5e-11       2      68 ..     716     785 ..     716     787 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 2.2e-14
                   -EEEETTEEEEEES--TT---SEEEEEE-SS-..EEEEEEETTEEEEEEEES-HHHHHHHHHHHH CS
  Rubredoxin_C   3 tiLkvsgidlfSvGdieeeekaeelveedkekgkYkklfikngklvGAiliGDtkesaklkklie 67 
                   t Lkv+gi+lfS+G+ ++ e+ ++++  d   + Y++l++++g+l G  l+GD + +a l   +e
    CTQ28661.1 309 TRLKVTGIELFSAGEQQAGEQDDIYTSWDPIDRHYRRLLLRDGRLRGVLLMGDCTAAAALTARLE 373
                   78****************************************************99998877666 PP

  == domain 2  score: 44.0 bits;  conditional E-value: 1.9e-14
                   --EEEETTEEEEEES--TT---.SEEEEEE-SS-..EEEEEEETT..EEEEEEEES-HHHHHHHHHHHHT CS
  Rubredoxin_C   2 vtiLkvsgidlfSvGdieeeek.aeelveedkekgkYkklfikng..klvGAiliGDtkesaklkkliek 68 
                   +t+Lk +g+d+ S+Gd ++    ++++++ d+ +++Ykk+++ ++   l G +l+GD +++a+l++++ +
    CTQ28661.1 716 STKLKLLGVDVASFGDAQGRTPgCQSYQWTDGPQQIYKKIVVSQDgkALLGGVLVGDASDYATLLQMMLN 785
                   699*****************99********************875447****************999876 PP

>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   1.4e-20   1.1e-17       2     152 ..    1028    1166 ..    1027    1171 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 1.4e-20
                  SSSCCCCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR    2 ganlrnvtlcpgaglceeallDttelakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakkt 98  
                  g++lr+v++c+g+++c+  + D+t la ++e    ++y+  + P+K K+avsgc + c++++ +Dig++++ k     g+n++v G+ g +++ +  
  CTQ28661.1 1028 GKSLRTVKSCVGSTWCRYGVQDSTGLAVRLE----HRYKGLRAPHKIKMAVSGCTRECAEAQGKDIGVIATDK-----GWNLYVCGNGGMKPRHADL 1115
                  7899***************************....9*************************************.....******************* PP

                  EEEEEEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHH..HHHHHHHHH.H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx.x RF
     NIR_SIR   99 sarlgfvpeeevlevveaivevyrdhgdrknrkkeRlkylverl..GvekFrekv.e 152 
                  +a    ++e  +++ ++ ++ +y     r++ + +R   ++++l  Gv+ +r++v e
  CTQ28661.1 1116 FA--SDLDEATLIRSIDRLLMFYI----RTADRLQRTSTWMDNLegGVAYLRQVVlE 1166
                  **..5778888*************....*************9876688888888833 PP

>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   4.7   4.6e-13   3.6e-10       1      50 [.     819     867 ..     819     868 .. 0.96
   2 !   20.0   0.0   8.5e-07   0.00066       2      50 ..     881     929 ..     881     930 .. 0.91

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 4.6e-13
    Fer2_BFD   1 iVCrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiLa 50 
                 ++C+C++v++g+I +a+ ++g+ ++ ++k  t+a tgCggC   ++++++
  CTQ28661.1 819 PICSCHNVSKGDICQAV-NNGAGDMSAIKSCTRAATGCGGCSALVKQVME 867
                 59***************.999************************99875 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 8.5e-07
    Fer2_BFD   2 VCrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiLa 50 
                 VC+ +  +++eI + +r ++++t+e++  r + g gC  C+p ++ +La
  CTQ28661.1 881 VCEHFPWSRQEIYHLVRVNHIHTFEQLISRYGQGHGCDVCKPLVASVLA 929
                 566677799*******7788***************************98 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   2.8e-09   2.2e-06     127     281 ..     102     246 ..      70     267 .. 0.77
   2 !   22.1   0.0   9.8e-08   7.6e-05      96     281 ..     472     653 ..     467     668 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.8e-09
  Pyr_redox_3 127 kviiAtGefdkPnklnipGeek.lvkhyskvkefhkya..gqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleel 221
                  +++ AtG   +P  +  pG ++ +v+ +++  +++ +       vViGg+  +v+aA  l r+g eVt+++rgs + +  +d          ++l++ 
   CTQ28661.1 102 ELVFATGS--RPFIPPLPGIDRpQVMPFRTLADVERILaiPGPAVVIGGGVLGVEAAAALRRHGGEVTLLHRGSGLMAPLTDA------FAADELRQQ 191
                  68899998..9999999999964677777777777765345789******************************988875443......445555555 PP

  Pyr_redox_3 222 vkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkkslfel 281
                  ++ + i+ +   ++ +i+ +     v+ +dg+ +++  +vvlatG +pd ++ ++s++  
   CTQ28661.1 192 LEARGIRCVLACRIAAIDADG----VRLADGRVFRA-ARVVLATGVQPDSRLAAQSGVLC 246
                  55556*************874....56789987765.99***********9998877655 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 9.8e-08
  Pyr_redox_3  96 lpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeek.lvkhyskvkef.....hkyagqkvvViGgknSavDaAlelvrkg 187
                  ++ +l e V +++++++    +++ ++++ +k+++AtG   +P ++ ipG +   + +y++ +++     h  a +  vViGg+  + +aA  l + g
   CTQ28661.1 472 IELRLGEAVATIDRDARLV-RDAEGHEIHWDKLVLATGS--YPFVPPIPGNDLaGCFVYRTLDDLdriaaHAAAAKSGVVIGGGLLGLEAANALKQLG 566
                  5667778888888876544.3778889***********9..699********74689999998651111155667889******************** PP

  Pyr_redox_3 188 aeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkkslfel 281
                   e +vv    ++ + +      l       l+e +    + v++ + +++i ++    +++++dg  +++ d vv+  G +p+  + + + ++ 
   CTQ28661.1 567 LETQVVEFAPNLMAVQ------LDNGGAAMLREKIVALGVGVHTSKATTAIVREADGLRLNFADGGALRT-DMVVFSAGIRPQDALARGCALQV 653
                  *******999766654......5555555565555554499************************99887.78899999999866666555555 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   2.9e-13   2.3e-10       3      68 ..     956    1018 ..     954    1019 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 2.9e-13
  NIR_SIR_ferr    3 qkdgkgyymvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLae 68  
                    qkdg   y+v  r+ +G +t++ l a+ +ia++y+  + ++T  Q + l+g + e+l++i++eLa+
    CTQ28661.1  956 QKDGS--YSVVPRMAAGEVTPDGLIAIGQIAKRYQ-LYSKVTGGQRIDLFGARLEHLPAIWRELAD 1018
                    89988..8***************************.****************************96 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.7   3.6e+03     157     221 ..      69     128 ..      65     129 .. 0.62
   2 !   13.1   2.5   6.7e-05     0.052       3      30 ..     144     173 ..     142     176 .. 0.91
   3 !   11.8   0.1   0.00017      0.13     149     207 ..     185     238 ..     179     261 .. 0.76
   4 !    6.9   0.0    0.0052       4.1     154     203 ..     465     510 ..     436     526 .. 0.77
   5 ?    2.4   0.4      0.12        92       3      27 ..     547     573 ..     546     589 .. 0.87
   6 ?    0.1   0.1      0.62   4.9e+02     151     205 ..     590     642 ..     580     662 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.7
                 HHTT-EEEESECEEEEEEEETCEEEEE.EECTEEE.EEEEEEEE--GGGHH.HHHTTCTT....TSEEEEEE CS
         DAO 157 ealGveilegtevtgleeedgkvwgve.rttpgen.daadavVnaaGawsd.llgllkel....dlpispvr 221
                  ++Gv ++ g+ v +++ +     +++      e+    d +V a+G  s+ ++   ++l    +++++p+r
  CTQ28661.1  69 TRHGVCLRSGEAVDEVDIQ---QRRLRiA----ETwLPWDELVFATG--SRpFI---PPLpgidRPQVMPFR 128
                 5789999999888888554...3444211....23235677999999..55566...444333367888887 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 6.7e-05
                 EEECTSHHHHHHHHHHHHTT..EEEEESSS CS
         DAO   3 viiGGGiiGlstAyeLarrg..Vtllekgd 30 
                 v+iGGG+ G+ +A +L r+g  Vtll +g+
  CTQ28661.1 144 VVIGGGVLGVEAAAALRRHGgeVTLLHRGS 173
                 9***************99978*****9985 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHH.HH CS
         DAO 149 taalaraaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsd.ll 207
                 +  l++++ea+G+++++ +++ +++     + gv r ++g++++a  vV+a+G++ d  l
  CTQ28661.1 185 ADELRQQLEARGIRCVLACRIAAID-----ADGV-RLADGRVFRAARVVLATGVQPDsRL 238
                 5679999*****************5.....4566.334488744456******9988744 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0052
                 HHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGG CS
         DAO 154 raaealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGaw 203
                 + + ++G+e+++g+ v  ++++   +  v r+++g++ + d++V+a+G +
  CTQ28661.1 465 DFFIEHGIELRLGEAVATIDRD---ARLV-RDAEGHEIHWDKLVLATGSY 510
                 44899********99999*774...4555.434466645699******88 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.12
                 EEECTSHHHHHHHHHHHHTT..EEEEE CS
         DAO   3 viiGGGiiGlstAyeLarrg..Vtlle 27 
                 v+iGGG  Gl +A +L + g  + ++e
  CTQ28661.1 547 VVIGGGLLGLEAANALKQLGleTQVVE 573
                 8***************77788877766 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.62
                 HHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECT.EEEEEEEEEEE--GGGHH CS
         DAO 151 alaraaealGveilegtevtgleeedgkvwgve.rttp.gendaadavVnaaGawsd 205
                  l++++ alGv +++    t++ +e   + g++ + ++ g+ ++ d vV +aG+  +
  CTQ28661.1 590 MLREKIVALGVGVHTSKATTAIVRE---ADGLRlNFADgGALRT-DMVVFSAGIRPQ 642
                 466779*********9777778665...5666666666566444.66******8755 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   2.5   4.6e-05     0.036       3      29 ..     144     177 ..     142     186 .. 0.80
   2 ?    2.9   0.0      0.06        46     128     150 ..     210     232 ..     185     245 .. 0.84
   3 ?    0.2   0.0       0.4   3.1e+02     124     151 ..     483     510 ..     469     519 .. 0.80
   4 !   12.8   1.4   5.8e-05     0.045       3      29 ..     547     580 ..     546     638 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.6e-05
                 EEE-SSHHHHHHHHHHHHTT--EEEE.......E CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLi.......t 29 
                 +ViGgG  G+eAA+a+ r G +v+L+       +
  CTQ28661.1 144 VVIGGGVLGVEAAAALRRHGGEVTLLhrgsglmA 177
                 8************************944444433 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.06
                 EEEEEETTS-EEEECEEEE--TT CS
        GIDA 128 vkgvvtedgetikakavviatGt 150
                   gv+++dg++++a  vv+atG 
  CTQ28661.1 210 ADGVRLADGRVFRAARVVLATGV 232
                 589*******************6 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.4
                 CTTEEEEEEETTS-EEEECEEEE--TT- CS
        GIDA 124 eekkvkgvvtedgetikakavviatGtf 151
                  ++  + v+ ++g++i+ ++ v+atG++
  CTQ28661.1 483 IDRDARLVRDAEGHEIHWDKLVLATGSY 510
                 3467888999****************97 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 5.8e-05
                 EEE-SSHHHHHHHHHHHHTT--EEEE.......E CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLi.......t 29 
                 +ViGgG+ G+eAA a+++lG+++  +       +
  CTQ28661.1 547 VVIGGGLLGLEAANALKQLGLETQVVefapnlmA 580
                 7**********************99966555553 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.6   2.8e+03     119     164 ..      68     109 ..      55     111 .. 0.78
   2 !    5.7   0.8    0.0065       5.1       3      33 ..     143     173 ..     142     179 .. 0.91
   3 ?    2.9   0.0     0.045        35     114     164 ..     187     232 ..     184     243 .. 0.87
   4 ?   -1.4   0.0      0.91   7.1e+02     367     393 ..     253     278 ..     239     279 .. 0.87
   5 ?    4.9   0.0     0.011       8.9      84     164 ..     433     509 ..     400     516 .. 0.70
   6 ?    3.3   0.3     0.035        27       4      33 ..     547     576 ..     544     581 .. 0.90
   7 ?    2.3   0.0     0.068        53     113     163 ..     589     638 ..     588     646 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.6
                  HHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 119 lkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                   ++ gv lr  ++v +v+ ++ +   +++  e+ l  d+lv+AtG+
   CTQ28661.1  68 YTRHGVCLRSGEAVDEVDIQQRR---LRI-AETWLPWDELVFATGS 109
                  56789999999999999775544...666.6689999******997 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0065
                  EEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVlllekak 33 
                   +viGgG  G+ aA++++++g +V+ll +++
   CTQ28661.1 143 AVVIGGGVLGVEAAAALRRHGGEVTLLHRGS 173
                  59************************98775 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.045
                  HHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like 114 allkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                   l ++l+++g+++ l ++++++  ++dg   v++ +++ ++a+++vlAtG 
   CTQ28661.1 187 ELRQQLEARGIRCVLACRIAAI--DADG---VRLADGRVFRAARVVLATGV 232
                  58999*****************..6777...666679************96 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.91
                  TTT-BBTTSTTEEE-GGGBSEEE-TTT CS
  HI0933_like 367 sktmeskkvpgLffaGEvlDvegvtGG 393
                   ++m + ++pg+  +GE+ +++g+t G
   CTQ28661.1 253 DRQM-ASSLPGISAIGECCEIDGQTWG 278
                  5678.8899**************9966 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.011
                  HHHHHTT--EEE-STTEEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE---- CS
  HI0933_like  84 alveelgvelkeedsgrlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGG 164
                   + ee+  ++   +    F  + +ae++  a      e g++lrl ++v+++  ++d ++  ++ +++e++ dklvlAtG+
   CTQ28661.1 433 VFGEERYPAYDRVHLSEYFAGR-SAESLSLAAGDFFIEHGIELRLGEAVATI--DRDARLVRDA-EGHEIHWDKLVLATGS 509
                  5555555555555555555555.6666666666667789*************..5566556666.9*************96 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.035
                  EEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like   4 iviGgGaAGlmaAisaakrgkrVlllekak 33 
                  +viGgG  Gl aA ++++ g ++ ++e a+
   CTQ28661.1 547 VVIGGGLLGLEAANALKQLGLETQVVEFAP 576
                  8************************99765 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.068
                  HHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 113 dallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                   +l +++ + gv ++++++ +++ +e+dg +r++  ++++l++d +v++ G
   CTQ28661.1 589 AMLREKIVALGVGVHTSKATTAIVREADG-LRLNFADGGALRTDMVVFSAG 638
                  58999******************999999.*****9***********9988 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.9   7.6e-05      0.06       1      30 [.     145     174 ..     145     181 .. 0.93
   2 !   10.6   0.1   0.00065       0.5       1      27 [.     548     574 ..     548     580 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.6e-05
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdr 30 
                    ++G+G+ G  aA++L+++g +v+ll ++++
     CTQ28661.1 145 VIGGGVLGVEAAAALRRHGGEVTLLHRGSG 174
                    8***********************988765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00065
                    EE--SHHHHHHHHHHHCCTEEEEEE-S CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllek 27 
                    ++G+Gl Gl aA +L++ g++ +++e 
     CTQ28661.1 548 VIGGGLLGLEAANALKQLGLETQVVEF 574
                    8********************999985 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   4.6e-05     0.036      28      60 ..     140     172 ..     121     197 .. 0.84
   2 !   11.9   2.3   0.00013       0.1      31      72 ..     546     588 ..     536     618 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.6e-05
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESS CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvr 60 
                  p+  +viGgGv G++A+a+ ++ g +Vt+l   
   CTQ28661.1 140 PGPAVVIGGGVLGVEAAAALRRHGGEVTLLHRG 172
                  6788***********************998765 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00013
                  EEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHH.HHHHTTT CS
  AlaDh_PNT_C  31 vlviGgGvaGlqAiatakglgakVtvlDvrparle.qleslga 72 
                   +viGgG  Gl+A+++ k+lg +++v++  p+ +  ql++ ga
   CTQ28661.1 546 GVVIGGGLLGLEAANALKQLGLETQVVEFAPNLMAvQLDNGGA 588
                  48**************************999876425555444 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0     0.009         7     198     262 ..     162     232 ..     154     242 .. 0.73
   2 ?   -2.0   0.0       2.2   1.7e+03     221     263 ..     470     510 ..     460     518 .. 0.83
   3 !   13.1   0.0   5.7e-05     0.044     179     260 ..     555     637 ..     528     641 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.009
                    HTSCCCEETTH...THHHHHHHHH.......TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-H CS
  Amino_oxidase 198 fggslllprgG...lsqlpealae.......elrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvpl 262
                    +gg+++l+ +G   ++ l +a+a+       e+rg +  l +r   i+      +v+l dg+v++a +Vv+++ +
     CTQ28661.1 162 HGGEVTLLHRGsglMAPLTDAFAAdelrqqlEARGIRCVLACRIAAIDA----DGVRLADGRVFRAARVVLATGV 232
                    5666666666666688899999997766666666666667777777766....555557*************987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.2
                    TTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-HH CS
  Amino_oxidase 221 rgldirlntrVkeikregdgvtvtledgevveaDaVvvTvplg 263
                    +g ++rl++ V  i+r  d   v+   g++++ D+ v+++  +
     CTQ28661.1 470 HGIELRLGEAVATIDR--DARLVRDAEGHEIHWDKLVLATGSY 510
                    677999*********9..7788888899999999999998765 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 5.7e-05
                    TTTTCBHHHHTCCCCHHHHHTSCCCEE...TTHTHHHHHHHHHTTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S CS
  Amino_oxidase 179 dpselsaklalpllwelegfggslllp...rgGlsqlpealaeelrgldirlntrVkeikregdgvtvtledgevveaDaVvvTv 260
                    ++++++a  +l l+ ++ +f+ +l+ +    gG ++l e + +  +g+ +++++  + i re+dg ++++ dg  ++ D Vv  +
     CTQ28661.1 555 GLEAANALKQLGLETQVVEFAPNLMAVqldNGGAAMLREKIVA--LGVGVHTSKATTAIVREADGLRLNFADGGALRTDMVVFSA 637
                    34667777777777888888888888899999***********..************************************9765 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.2   1.6e+02     192     222 ..       3      34 ..       1      50 [. 0.83
   2 ?    3.9   0.0     0.032        25     150     228 ..     101     175 ..      73     190 .. 0.76
   3 ?   -3.3   0.0       4.7   3.6e+03     145     160 ..     219     234 ..     214     235 .. 0.78
   4 !   11.3   0.0   0.00017      0.13     141     218 ..     492     570 ..     472     587 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.2
  K_oxygenase 192 kriaVvGsGqSaaeifedllrrqkk.velklv 222
                  +r++V+G G  a  +++ l++r ++   +++v
   CTQ28661.1   3 RRLVVIGNGMAATRLVQRLVERDPArFAITVV 34 
                  799******************97753666665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.032
  K_oxygenase 150 rnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrseal 228
                   +lv ++G++p iP++   ++ +++v+   +++  ++ l+ +   +V+G+G  + e +  l r+    e++l+ r+++l
   CTQ28661.1 101 DELVFATGSRPFIPPLPG-ID-RPQVMPFRTLADVERILAIPGPAVVIGGGVLGVEAAAALRRHGG--EVTLLHRGSGL 175
                  5799**********9876.55.47888777777666668899999***********9999988776..78888887665 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4.7
  K_oxygenase 145 eelearnlvlgvGtep 160
                  + ++a ++vl++G +p
   CTQ28661.1 219 RVFRAARVVLATGVQP 234
                  5678888999999887 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00017
  K_oxygenase 141 egeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkee.llakkriaVvGsGqSaaeifedllrrqkkve 218
                  + e +e++  +lvl++G+ p +P++  +      v+ + + l r+++  +a+k+ +V+G+G  + e ++ l +   +++
   CTQ28661.1 492 DAEGHEIHWDKLVLATGSYPFVPPIPGNDLAGCFVYRTLDDLDRIAAhAAAAKSGVVIGGGLLGLEAANALKQLGLETQ 570
                  4456788889**************9877664445555556666665547889999********9999999887655555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0012      0.94       1      43 [.       6      43 ..       6      91 .. 0.73
   2 ?   -1.5   1.4       2.9   2.2e+03       1      19 [.     144     162 ..     144     172 .. 0.86
   3 !    7.7   0.1     0.004       3.1     134     155 ..     211     232 ..     183     233 .. 0.80
   4 ?    2.2   0.0       0.2   1.6e+02       1      36 [.     405     441 ..     405     450 .. 0.79
   5 ?    5.3   0.0     0.022        17     120     154 ..     475     508 ..     437     510 .. 0.68
   6 ?   -1.5   0.2       2.8   2.2e+03       1      19 [.     547     565 ..     547     575 .. 0.84
   7 ?    4.2   0.1     0.048        38     117     154 ..     600     638 ..     588     640 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0012
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlf..dpsepgagrvwr 43
                   +++G G++++ +++rL++r   ++++ it++  +p+++      +
     CTQ28661.1  6 VVIGNGMAATRLVQRLVERD--PARFAITVVgdEPHPAY-----N 43
                   69*****************5..*********53334443.....3 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
  NAD_binding_9   1 aivGaGprGlavlerLlar 19 
                    +++G+G+ G+ ++++L ++
     CTQ28661.1 144 VVIGGGVLGVEAAAALRRH 162
                    69************99887 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.004
  NAD_binding_9 134 qavlladgaslaadaVvLAlGh 155
                      v+ladg+ ++a +VvLA+G 
     CTQ28661.1 211 DGVRLADGRVFRAARVVLATGV 232
                    35899****************6 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.2
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlf..dpsep 36 
                    ++vG G+ G  +le+ ++r+  +++ +i +f  +++++
     CTQ28661.1 405 VLVGHGMVGHHFLEQCVSRN-LHQQYRIVVFgeERYPA 441
                    68*****************6.99999999995233444 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.022
  NAD_binding_9 120 hraevvdleeradgqavlladgaslaadaVvLAlG 154
                      +e+v+  +r++ + v+ a+g++++ d++vLA+G
     CTQ28661.1 475 RLGEAVATIDRDA-RLVRDAEGHEIHWDKLVLATG 508
                    4455555555544.4799****************9 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 2.8
  NAD_binding_9   1 aivGaGprGlavlerLlar 19 
                    +++G+G  Gl ++++L + 
     CTQ28661.1 547 VVIGGGLLGLEAANALKQL 565
                    69***********999765 PP

  == domain 7  score: 4.2 bits;  conditional E-value: 0.048
  NAD_binding_9 117 vevhraevv.dleeradgqavlladgaslaadaVvLAlG 154
                    v vh+++++ ++ ++adg ++  adg  l+ d Vv   G
     CTQ28661.1 600 VGVHTSKATtAIVREADGLRLNFADGGALRTDMVVFSAG 638
                    66787766537999*********************9887 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0076       5.9       8      46 ..       3      54 ..       1     111 [. 0.61
   2 ?    4.3   0.2      0.07        54      10      40 ..     143     173 ..     141     254 .. 0.65
   3 ?    4.8   0.3     0.049        38       4      37 ..     540     573 ..     537     634 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0076
  NAD_binding_7  8 kkvlvvGgGevAarkvrklleag...akvtvvapevkeele..........e 46
                   ++ +v+G G  A+r v++l+e +     +tvv  e +++ +          e
     CTQ28661.1  3 RRLVVIGNGMAATRLVQRLVERDparFAITVVGDEPHPAYNriqlspllagE 54
                   799*****************97763367999998853333344344444440 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.07
  NAD_binding_7  10 vlvvGgGevAarkvrklleagakvtvvapev 40 
                     +v+GgG ++ + +  l + g +vt++   +
     CTQ28661.1 143 AVVIGGGVLGVEAAAALRRHGGEVTLLHRGS 173
                    58************************76663 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.049
  NAD_binding_7   4 dlkgkkvlvvGgGevAarkvrklleagakvtvva 37 
                        k+ +v+GgG ++++ ++ l + g + +vv 
     CTQ28661.1 540 AAAAKSGVVIGGGLLGLEAANALKQLGLETQVVE 573
                    56678889*******************9999974 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   3.8     0.013        10       3      32 ..     144     173 ..     143     185 .. 0.91
   2 ?   -1.9   0.0       1.7   1.3e+03     370     401 ..     244     269 ..     180     274 .. 0.63
   3 ?    9.9   1.5   0.00045      0.35       3      49 ..     547     592 ..     546     623 .. 0.80
   4 ?    3.1   0.0     0.051        40     368     404 ..     651     681 ..     628     693 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.013
                    EEE--SHHHHHHHHHHHHTTT-EEEEESSS CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvekeq 32 
                    +ViG+G+ G  AA++++++G +v+++  ++
     CTQ28661.1 144 VVIGGGVLGVEAAAALRRHGGEVTLLHRGS 173
                    9***********************998765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
                    EEES-EEEBETTSBESTTEEESSBTEEE-STC CS
  FAD_binding_2 370 hytmgGvetdengrvldadgqpipGLYAaGev 401
                      ++ G+++d ++         +pG  A+Ge+
     CTQ28661.1 244 VLCQRGIVVDRQMAS------SLPGISAIGEC 269
                    334556666666665......77777777776 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00045
                    EEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavl 49 
                    +ViG+Gl GL AA ++++ Gl++ vve +++   a +   Gg+++++
     CTQ28661.1 547 VVIGGGLLGLEAANALKQLGLETQVVEFAPN-LMAVQLDNGGAAMLR 592
                    8**************************8887.335555566666655 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.051
                    EEEEES-EEEBETTSBESTTEEESSBTEEE-STCEES CS
  FAD_binding_2 368 aqhytmgGvetdengrvldadgqpipGLYAaGevaag 404
                     q +  gG+++d ++r+        p+  A+Ge+a +
     CTQ28661.1 651 LQVGERGGIHIDGQCRT------SDPDVLAIGECALW 681
                    677889***********......9999*******955 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.2    0.0039         3       3      33 ..     144     174 ..     143     200 .. 0.80
   2 ?    5.0   0.6     0.025        20       4      36 ..     548     580 ..     546     609 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0039
                 EEE--SCCHHHHHHHHHHTT-EEEEE-S-HH CS
     3HCDH_N   3 aviGaGtmGagiaavfasagleVvlvdisee 33 
                  viG G++G + aa++ ++g eV+l+ + + 
  CTQ28661.1 144 VVIGGGVLGVEAAAALRRHGGEVTLLHRGSG 174
                 59***********************988554 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.025
                 EE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHH CS
     3HCDH_N   4 viGaGtmGagiaavfasagleVvlvdiseeale 36 
                 viG G++G + a+++ + gle+++v+ +++ ++
  CTQ28661.1 548 VIGGGLLGLEAANALKQLGLETQVVEFAPNLMA 580
                 9************************99887665 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.3   2.5e+03       2      27 ..       6      34 ..       5      43 .. 0.77
   2 ?    3.5   0.1      0.11        84       2      26 ..     144     168 ..     143     183 .. 0.87
   3 ?    0.2   0.0       1.1   8.5e+02       2      33 ..     405     438 ..     404     462 .. 0.77
   4 ?    3.1   0.1      0.14   1.1e+02       2      33 ..     547     578 ..     546     608 .. 0.85
   5 ?   -2.7   0.0       8.9   6.9e+03      44      58 ..     768     782 ..     760     786 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.3
                EEES-SHHHHHHHHHHHHTT....EEEEEE CS
      TrkA_N  2 iiiGlGrvGrslaeeLsegg....kdvvvi 27
                ++iG G  +++l+++L e+       ++v+
  CTQ28661.1  6 VVIGNGMAATRLVQRLVERDparfA-ITVV 34
                89**************996656643.5555 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.11
                 EEES-SHHHHHHHHHHHH.TTEEEEE CS
      TrkA_N   2 iiiGlGrvGrslaeeLse.ggkdvvv 26 
                 ++iG G +G + a  L++ gg +v++
  CTQ28661.1 144 VVIGGGVLGVEAAAALRRhGG-EVTL 168
                 8*****************666.4887 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.1
                 EEES-SHHHHHHHHHHHHTT..EEEEEEESSHHH CS
      TrkA_N   2 iiiGlGrvGrslaeeLsegg..kdvvvidkdeer 33 
                 +++G+G vG + +e+  +++  +++ ++   eer
  CTQ28661.1 405 VLVGHGMVGHHFLEQCVSRNlhQQYRIVVFGEER 438
                 79*************9997667666666666665 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.14
                 EEES-SHHHHHHHHHHHH.TTEEEEEEESSHHH CS
      TrkA_N   2 iiiGlGrvGrslaeeLse.ggkdvvvidkdeer 33 
                 ++iG G +G + a+ L++ g +   v++  ++ 
  CTQ28661.1 547 VVIGGGLLGLEAANALKQlGLE-TQVVEFAPNL 578
                 89****************7764.8888877764 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 8.9
                 EEES-TTSHHHHHHT CS
      TrkA_N  44 vvvgdatdeevLeea 58 
                 v+vgda+d ++L ++
  CTQ28661.1 768 VLVGDASDYATLLQM 782
                 899********9876 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.61   4.7e+02      26      51 ..     143     168 ..     134     171 .. 0.88
   2 ?    8.6   0.3    0.0023       1.8      10      63 ..     530     584 ..     524     617 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.61
                    EEEE--SHHHHHHHHHHHHCT-EEEE CS
  AdoHcyase_NAD  26 avvaGyGdvGkGcaaslkglGarviv 51 
                    avv+G G +G  +aa+l+ +G  v++
     CTQ28661.1 143 AVVIGGGVLGVEAAAALRRHGGEVTL 168
                    789999***************99975 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0023
                    CHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-H.HHHHHHH CS
  AdoHcyase_NAD  10 vdgikratdvllaGkvavvaGyGdvGkGcaaslkglGarvivtevdP.icalqaa 63 
                    +d + r +    a k  vv+G G +G  +a++lk+lG    v e  P + a+q  
     CTQ28661.1 530 LDDLDRIAAHAAAAKSGVVIGGGLLGLEAANALKQLGLETQVVEFAPnLMAVQLD 584
                    688999999999********************************99945677654 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   3.7    0.0074       5.8       3      31 ..     144     172 ..     143     175 .. 0.93
   2 ?    5.1   0.1     0.015        12       3      30 ..     547     574 ..     547     578 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0074
  FAD_oxidored   3 vVvGGgpaGvaAAiaAaraGakvlLveer 31 
                   vV+GGg+ Gv AA a  r+G +v L+++ 
    CTQ28661.1 144 VVIGGGVLGVEAAAALRRHGGEVTLLHRG 172
                   8************************9886 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.015
  FAD_oxidored   3 vVvGGgpaGvaAAiaAaraGakvlLvee 30 
                   vV+GGg+ G+ AA a ++ G ++ +ve 
    CTQ28661.1 547 VVIGGGLLGLEAANALKQLGLETQVVEF 574
                   8************************995 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   3.6     0.048        37       4      33 ..     143     172 ..     141     177 .. 0.91
   2 ?    8.2   0.6    0.0016       1.3       5      31 ..     547     573 ..     545     581 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.048
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekr 33 
                     +++G+G  G+ +a  L+++G +v+l+ + 
     CTQ28661.1 143 AVVIGGGVLGVEAAAALRRHGGEVTLLHRG 172
                    579***********************9885 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0016
                    EEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlve 31 
                    +++G+G+ Gl +a+ L++ G ++ +ve
     CTQ28661.1 547 VVIGGGLLGLEAANALKQLGLETQVVE 573
                    69*********************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.91u 0.27s 00:00:01.18 Elapsed: 00:00:00.43
# Mc/sec: 9393.49
//
Query:       CTQ28662.1  [L=262]
Description: Nitrate transport protein NasD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.2e-33  113.8   0.0    1.3e-32  113.2   0.0    1.3  1  ABC_tran     ABC transporter
    7.2e-05   22.7   0.1    0.00015   21.7   0.1    1.5  1  RsgA_GTPase  RsgA GTPase
    0.00025   21.5   0.0    0.00041   20.8   0.0    1.6  1  AAA_16       AAA ATPase domain
    0.00041   20.2   0.1       0.61    9.8   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00069   19.3   0.7     0.0021   17.8   0.2    2.0  2  AAA_29       P-loop containing region of AAA domain
    0.00092   19.6   0.1     0.0095   16.4   0.1    2.1  1  AAA          ATPase family associated with various cellular a
  ------ inclusion threshold ------
      0.011   15.9   0.8       0.16   12.1   0.8    2.3  1  AAA_33       AAA domain
      0.013   15.6   0.2      0.049   13.7   0.1    1.9  2  MMR_HSR1     50S ribosome-binding GTPase
       0.02   13.7   1.2      0.047   12.5   0.1    2.1  2  ABC_ATPase   Predicted ATPase of the ABC class
      0.023   15.2   0.3      0.036   14.5   0.3    1.3  1  AAA_23       AAA domain
      0.065   12.8   1.3       0.11   12.0   0.0    2.0  3  AAA_25       AAA domain
      0.088   12.5   0.0       0.15   11.7   0.0    1.3  1  ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-bindi
      0.099   12.9   1.3       0.36   11.1   0.8    2.4  2  AAA_22       AAA domain
        0.1   12.9   0.1        1.1    9.5   0.1    2.3  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
       0.12   12.4   0.0       0.26   11.3   0.0    1.6  1  Dynamin_N    Dynamin family
       0.18   11.3   0.6       0.28   10.7   0.1    1.5  2  FeoB_N       Ferrous iron transport protein B
        0.2   11.3   0.1       0.28   10.8   0.1    1.1  1  AAA_15       AAA ATPase domain
        0.2   11.5   0.1        2.6    7.9   0.0    2.2  2  Rad17        Rad17 P-loop domain
       0.23   11.5   1.8        1.1    9.2   0.2    2.8  4  AAA_5        AAA domain (dynein-related subfamily)
       0.25   10.5   0.1       0.33   10.1   0.1    1.4  1  G-alpha      G-protein alpha subunit
       0.26   10.7   0.3         13    5.2   0.1    2.2  2  SMC_N        RecF/RecN/SMC N terminal domain
       0.33   10.9   1.2       0.41   10.6   0.2    1.7  2  NACHT        NACHT domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.0   1.6e-35   1.3e-32       1     136 [.      24     166 ..      24     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 1.6e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................esde 83 
                 l+nvs+++ ege++ ++G++G+GKStLl+l+ag ++pteG +l+d++++          e +v++q+++l p l++ +n                e++e
  CTQ28662.1  24 LQNVSFDIVEGETISLIGHSGCGKSTLLNLIAGITTPTEGGLLCDNREIAG-----PGPERAVVFQNHSLLPWLSCFDNvalavdqvfrrtmsksERRE 117
                 79********************************************99999.....99999******************************98766667 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +ie+ l+++++ +  +++      ++SgG+kqrv +aral+ kpk+lllDEp+
  CTQ28662.1 118 WIEHNLARVQMGHALHKRP----GEISGGMKQRVGIARALAMKPKVLLLDEPF 166
                 7999999999999777777....*****************************6 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   1.8e-07   0.00015      96     121 ..      31      56 ..       6      65 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.8e-07
                  HCTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallp 121
                   ++++t+ l+G+SG GKStL+n +++
   CTQ28662.1  31 IVEGETISLIGHSGCGKSTLLNLIAG 56 
                  35679*****************9987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   5.1e-07   0.00041      24     107 ..      34     165 ..      22     257 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.1e-07
      AAA_16  24 pelvllsGesGvGKsslvrellralekd.................ggiflrgkcdqlesa.....ipysalaqalareellrqllde..aesaeleawr 98 
                 +e + l+G+sG+GKs+l++ ++  +++                  +             a      +++++++++++  l  +   +   +++e+++w 
  CTQ28662.1  34 GETISLIGHSGCGKSTLLNLIAG-ITTPteggllcdnreiagpgpE----------R--AvvfqnHSLLPWLSCFDNVALAVDQVFRrtMSKSERREWI 119
                 37899*****************5.5554465444444433333321..........2..2111113446788888776666655555563344666666 PP

      AAA_16  99 ekleeala.....................................a 107
                 e+ +++++                                     +
  CTQ28662.1 120 EHNLARVQmghalhkrpgeisggmkqrvgiaralamkpkvllldeP 165
                 6666666677755554444444444444444444444444444440 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0018       1.5       4      23 ..      39      58 ..      37      87 .. 0.83
   2 !    9.8   0.0   0.00075      0.61     234     298 ..     136     198 ..     103     201 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0018
      AAA_21  4 liGpNgsGKSnLLdaldlla 23
                liG  g+GKS+LL ++ ++ 
  CTQ28662.1 39 LIGHSGCGKSTLLNLIAGIT 58
                8***************8874 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00075
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ellkelsrngaQviltTHS 298
                 + e+S G+k+  +++ al+  +   ++ll+DEp   L+    ++l  +++ + ++ ++ +++ TH+
  CTQ28662.1 136 PGEISGGMKQRVGIARALAMKP---KVLLLDEPFGALDALTRAHLQdTVMHIQQELNTTIVMITHD 198
                 6778999998877777777766...9*************88888884555555557899******8 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         2   1.6e+03      51      60 ..      11      20 ..       5      21 .. 0.79
   2 !   17.8   0.2   2.6e-06    0.0021      15      48 ..      27      60 ..      18      63 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2
      AAA_29 51 kvrfNkaane 60
                ++rfN a++e
  CTQ28662.1 11 SQRFNTASGE 20
                579****975 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.6e-06
      AAA_29 15 htieidlkg.atlltGpsGsGKSTllDAiqalLvp 48
                 +++i + g ++ l+G+sG GKSTll  i+ + +p
  CTQ28662.1 27 VSFDIVE-GeTISLIGHSGCGKSTLLNLIAGITTP 60
                4455543.45999************9776666666 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.2e-05    0.0095       3      99 ..      39     198 ..      37     225 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.2e-05
                 EESSTTSSHHHHHHHHHHHHTHE.............................................................EEEEETTTCSSSSTT CS
         AAA   3 lyGppGtGKTllakavakelgve.............................................................fleisgsellskyvg 40 
                 l+G  G+GK++l + +a  +  +                                                             + ++++   l k  g
  CTQ28662.1  39 LIGHSGCGKSTLLNLIAGITTPTeggllcdnreiagpgperavvfqnhsllpwlscfdnvalavdqvfrrtmskserrewiehnLARVQMGHALHKRPG 137
                 89*****************74333445555556777777888888888888888899989999999888888888888888888899999999989999 PP

                 HHHHHHHHHHHHHHHTS.TSEEEEEET....GGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA  41 esekkirelfkeakeka.kpsilfiDE....idalaksrsgseseeeervvnqLlteldgvkkk 99 
                 e +  +++ +  a++ a kp++l++DE    +dal+++     ++  + ++++L t +   +++
  CTQ28662.1 138 EISGGMKQRVGIARALAmKPKVLLLDEpfgaLDALTRAH---LQDTVMHIQQELNTTIVMITHD 198
                 9999999999999999999********888889998888...6667777777777776666665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.8    0.0002      0.16       4     111 ..      39     204 ..      37     209 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
      AAA_33   4 lvGlpGsGKstlaerllkklgavllssdt............................................lrrrlfgtdqqskt............ 46 
                 l+G++G+GKstl+  ++        +++t                                            +rr++ +++++ ++            
  CTQ28662.1  39 LIGHSGCGKSTLLNLIAGI------TTPTeggllcdnreiagpgperavvfqnhsllpwlscfdnvalavdqvFRRTMSKSERR-EWiehnlarvqmgh 130
                 79**********9988743......33443334444457888888888888888888888888888887777644444442222.22445555555555 PP

      AAA_33  47 ....dytrvldrlyqilnelarkalsagrnvildat......nlsrrerarflklarrlgvpvrivvvetdeetl 111
                     ++ +++  ++q++ ++ar  + + + ++ld +      +++++ ++ ++++ ++l+  + +++ ++de++l
  CTQ28662.1 131 alhkRPGEISGGMKQRV-GIARALAMKPKVLLLDEPfgaldaLTRAHLQDTVMHIQQELNTTIVMITHDVDEAVL 204
                 44433444555566666.666655555555667888777776666788888888888888888888888888876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1     6e-05     0.049       2      21 ..      37      56 ..      36      72 .. 0.88
   2 ?   -1.0   0.0       2.3   1.9e+03      23      42 ..     181     200 ..     169     254 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6e-05
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                + ++G++  GKStL+n + g
  CTQ28662.1 37 ISLIGHSGCGKSTLLNLIAG 56
                789*************9987 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.3
                 TEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1  23 kaivsdkpgtTrdinegrvk 42 
                 + +++++  tT+ ++++ v+
  CTQ28662.1 181 VMHIQQELNTTIVMITHDVD 200
                 45666677777777777665 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.54   4.4e+02     249     264 ..      39      54 ..      30      58 .. 0.76
   2 ?   12.5   0.1   5.8e-05     0.047     323     384 ..     139     200 ..     108     226 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.54
                 EEE-TTSSHHHHHHHH CS
  ABC_ATPase 249 IvGggfhGKsTLLeAl 264
                 ++G    GKsTLL+ +
  CTQ28662.1  39 LIGHSGCGKSTLLNLI 54 
                 5677788******966 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.8e-05
                 --HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHH CS
  ABC_ATPase 323 ASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrely 384
                  SG + q + i++al ++ k+lL+DE   A   + r ++ + +++ ++e  t++v   +++ 
  CTQ28662.1 139 ISGGMKQRVGIARALAMKPKVLLLDEPFGALDALTRAHLQDTVMHIQQELNTTIVMITHDVD 200
                 59**********************************99999999888876666665555544 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.3   4.5e-05     0.036      10      44 ..      24      59 ..      19      73 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.5e-05
      AAA_23 10 frdqeidF.skgltlItGpNGaGKTTildAiklaLy 44
                ++++++d  +     ++G+ G+GK+T+l+ i  +++
  CTQ28662.1 24 LQNVSFDIvEGETISLIGHSGCGKSTLLNLIAGITT 59
                56666666766677899*************998876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00014      0.11      30      54 ..      31      55 ..      24      83 .. 0.82
   2 ?   -2.7   0.0       4.6   3.8e+03       9      29 ..     103     123 ..      99     127 .. 0.76
   3 ?   -2.7   0.2       4.6   3.8e+03     171     188 ..     180     197 ..     170     198 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
      AAA_25 30 lpagelallaGapgtGKttlaldla 54
                +++ge++ l+G++g+GK+tl+  +a
  CTQ28662.1 31 IVEGETISLIGHSGCGKSTLLNLIA 55
                679****************975544 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.6
      AAA_25   9 avsvadlaapppprrwlvkgl 29 
                 ++++++  ++ ++r+w+ ++l
  CTQ28662.1 103 DQVFRRTMSKSERREWIEHNL 123
                 556777788899999998887 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4.6
      AAA_25 171 aleriarrtgaavllvhH 188
                  + +i+++++ +++++ H
  CTQ28662.1 180 TVMHIQQELNTTIVMITH 197
                 556899999999999998 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00019      0.15       9      35 ..      29      55 ..      23      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00019
                 S-EBTT-EEEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  9 fpivqGqrtlipgafgvGktvisqsls 35
                 f iv+G+++ ++g +g+Gk+++++ ++
   CTQ28662.1 29 FDIVEGETISLIGHSGCGKSTLLNLIA 55
                 789*******************98876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.8   0.00044      0.36       8      26 ..      37      55 ..      32     211 .. 0.88
   2 ?   -2.2   0.0       5.7   4.6e+03      45      64 ..     235     254 ..     219     260 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00044
      AAA_22  8 lvvtGesGtGKTtllrrll 26
                + ++G+sG+GK+tll+ ++
  CTQ28662.1 37 ISLIGHSGCGKSTLLNLIA 55
                789***********98765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.7
      AAA_22  45 vtlpsstsskdllrellral 64 
                 v+l+ ++    l++++l++l
  CTQ28662.1 235 VQLADDSRYHHLRQQILHFL 254
                 44555555555555555554 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0014       1.1      62      84 ..     155     177 ..     108     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0014
     SbcCD_C  62 palrlvfLDEAFsklDeesiatl 84 
                  ++++++LDE F+ lD+ ++a l
  CTQ28662.1 155 MKPKVLLLDEPFGALDALTRAHL 177
                 46899***********9888776 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00032      0.26       1      25 [.      37      60 ..      37      70 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00032
                EEEEEBTTTTHHHHHHHHHTS--S- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilp 25
                i ++G+   GKS++ln + g    p
  CTQ28662.1 37 ISLIGHSGCGKSTLLNLIAGIT-TP 60
                789****************987.45 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00034      0.28       2      24 ..      36      58 ..      35      61 .. 0.90
   2 ?   -3.3   0.0       7.2   5.8e+03     126     141 ..     180     195 ..     167     203 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00034
                EEEEEESTTSSHHHHHHHHHTTS CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgak 24
                t+ l+G   +Gk+tl+n ++g +
  CTQ28662.1 36 TISLIGHSGCGKSTLLNLIAGIT 58
                799****************9975 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.2
                 -HHHHHHHHTS-EEEE CS
      FeoB_N 126 dlkkLsekLgvpvvkt 141
                  + +++++L++ +v +
  CTQ28662.1 180 TVMHIQQELNTTIVMI 195
                 4455555566555554 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00035      0.28      14      43 ..      24      54 ..      21      73 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsileal 43
                l++v+ d+ e  +  liG+ ++GKS++l+++
  CTQ28662.1 24 LQNVSFDIVEGeTISLIGHSGCGKSTLLNLI 54
                677777777765779*************998 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0032       2.6      49      68 ..      38      57 ..      22      62 .. 0.80
   2 ?    1.1   0.0      0.41   3.3e+02       3      80 ..     112     191 ..     110     207 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0032
       Rad17 49 LisGPsGCgkstvvkvLske 68
                 + G sGCgkst ++ ++ +
  CTQ28662.1 38 SLIGHSGCGKSTLLNLIAGI 57
                4679*********9998866 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.41
       Rad17   3 edenelWfekykPekaeelavhkkk..ie.evkewlk.advLesrkkriLLisGPsGCgkstvvkvLskelgiklrewlnpv 80 
                 ++e  +W+e      +   a+hk+   i+  +k+ +  a  L  +  ++LL+  P G   + +   L +  ++++++ ln +
  CTQ28662.1 112 KSERREWIEHNLARVQMGHALHKRPgeISgGMKQRVGiARALAMK-PKVLLLDEPFGALDALTRAHL-QDTVMHIQQELNTT 191
                 577788999999999999999998511332234433214444444.457778888776665554444.34556666666655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2    0.0014       1.1       4      23 ..      39      58 ..      36      66 .. 0.87
   2 ?   -1.7   0.0       3.3   2.7e+03      69      96 ..      93     120 ..      85     150 .. 0.73
   3 ?   -0.1   0.1         1   8.3e+02      76      76 ..     174     174 ..      99     222 .. 0.63
   4 ?   -1.9   0.0       3.8   3.1e+03      18      45 ..     223     250 ..     214     252 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0014
                EE--SSSSHHHHHHHGGGGB CS
       AAA_5  4 LvGppGtgKselaerlaaal 23
                L+G +G+gKs+l   +a  +
  CTQ28662.1 39 LIGHSGCGKSTLLNLIAGIT 58
                9************9998766 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.3
                 EEEESGGG--HHHHHHHHHHHHSSEEE. CS
       AAA_5  69 lvlDEveraesevlnsLlslleerrlll 96 
                  ++D v  a ++v+ + +s  e+r++  
  CTQ28662.1  93 SCFDNVALAVDQVFRRTMSKSERREWIE 120
                 5677777777777777766666666653 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1
                 G CS
       AAA_5  76 r 76 
                 r
  CTQ28662.1 174 R 174
                 3 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 3.8
                 HGGGGBS--EEEEE--TT--HHHHH--B CS
       AAA_5  18 rlaaalnreveyvqltrdtteedlkgrr 45 
                  la  l r+ + vql +d ++ +l++++
  CTQ28662.1 223 ILAVDLPRPRHRVQLADDSRYHHLRQQI 250
                 4555568899999999999999999986 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1    0.0004      0.33      25      50 ..      36      61 ..      12     199 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0004
                EEEEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha 25 kllllGqseSGKsTilkqlkllykkg 50
                ++ l+G+s++GKsT+l+ +  + +++
  CTQ28662.1 36 TISLIGHSGCGKSTLLNLIAGITTPT 61
                5889*************999888776 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.015        13      25      43 ..      35      53 ..      21      57 .. 0.79
   2 ?    3.6   0.0     0.048        39     136     198 ..     138     198 ..      92     217 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.015
                SEEEEEESTTSSHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldA 43
                +  +++G+ G+GKs ll+ 
  CTQ28662.1 35 ETISLIGHSGCGKSTLLNL 53
                45689*********99875 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.048
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislr 198
                 ++SgG k+ v +a  +A+   kp+ + llDe   aLD+  ++ + + + + +++  + +++i+++
  CTQ28662.1 138 EISGGMKQRVGIARALAM---KPK-VLLLDEPFGALDALTRAHLQDTVMHIQQElnTTIVMITHD 198
                 689999999999988876...455.4689**99****9999999998886665511444444543 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2    0.0005      0.41       2      21 ..      36      55 ..      35      59 .. 0.89
   2 ?   -3.4   0.1       9.5   7.7e+03      70      92 ..     179     201 ..     168     209 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0005
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                ++ l G +G+GK+tLl  +a
  CTQ28662.1 36 TISLIGHSGCGKSTLLNLIA 55
                7889************9776 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.5
                 -CCHHHHCCSCCCEEEEEE-STT CS
       NACHT  70 sevwavllelperlLlilDglDe 92 
                 ++v+ + +el + +++i  ++De
  CTQ28662.1 179 DTVMHIQQELNTTIVMITHDVDE 201
                 34444444555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 1829.36
//
Query:       CTQ28663.1  [L=294]
Description: Nitrate transport permease protein NrtB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-20   73.3  16.5      2e-20   73.3  16.5    1.6  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.093   12.7   0.9       0.22   11.5   0.9    1.6  1  DUF5359       Family of unknown function (DUF5359)
       0.29   11.7   0.1       0.29   11.7   0.1    3.5  5  LPAM_1        Prokaryotic membrane lipoprotein lipid attachme


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.34     2e+03      29      44 ..      46      93 ..      20     116 .. 0.55
   2 !   73.3  16.5   3.4e-24     2e-20       1     170 [.     120     277 ..     120     290 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.34
  BPD_transp_1 29 slPsfv.laillvlvf...............................v 44
                   lP+++ l++ll+++                                 
    CTQ28663.1 46 LLPPLLgLGVLLLAWQlaamhskgfptplstldsaltlfadpfyqdgP 93
                  444444455555544445555555555555555555555555555554 PP

  == domain 2  score: 73.3 bits;  conditional E-value: 3.4e-24
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   gi+lG+l++  r+ ++ +++ pli +l+ + +++++++ +        ++ +  +   ++++ +++++++++++++r +p+d+ ++ar+l +s+w++
    CTQ28663.1 120 GIPLGFLIG--RSLFFARMFNPLIALLRPVSPLAWLPIGL------LLFQKAEPASSWTIFICSIWPMVINTAEGVRRIPQDYLNVARVLQLSEWTV 208
                   89*******..999************************99......7889999998888899999******************************** PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnl 170
                   +rk+++P++lp ++tg++l++g+++   v++e+l+++ G+g ++++  ++++++  +  +++a+vi+ ++ +l
    CTQ28663.1 209 MRKILFPAVLPAVLTGVRLSIGIAWLVIVAAEMLTGGLGIGFWIWN--EWNNLNVEN--IIIAIVIIGVVGLL 277
                   ***********************************76555555555..555555555..44444444444433 PP

>> DUF5359  Family of unknown function (DUF5359)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.9   3.8e-05      0.22       3      27 ..     260     284 ..     259     290 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.8e-05
     DUF5359   3 kvEriliKlviiqfifLllaQlllh 27 
                 +vE i+i +vii ++ Lll Q l++
  CTQ28663.1 260 NVENIIIAIVIIGVVGLLLEQGLML 284
                 69*******************9975 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.8         3   1.8e+04      11      14 ..      55      58 ..      50      59 .. 0.53
   2 ?   -2.6   0.5       1.7     1e+04      11      16 ..     115     120 ..     113     120 .. 0.75
   3 ?   11.7   0.1   4.9e-05      0.29       1      16 [.     209     224 ..     209     224 .. 0.98
   4 ?   -1.2   0.1      0.62   3.7e+03       6      16 ..     234     244 ..     234     244 .. 0.81
   5 ?   -4.0   1.0         3   1.8e+04       4      10 ..     264     270 ..     264     271 .. 0.77

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3
      LPAM_1 11 lllL 14
                +llL
  CTQ28663.1 55 VLLL 58
                4455 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.7
      LPAM_1  11 lllLsG 16 
                 l++L+G
  CTQ28663.1 115 LAALAG 120
                 788887 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 4.9e-05
      LPAM_1   1 MKKillalgalllLsG 16 
                 M+Kil+ +++ ++L+G
  CTQ28663.1 209 MRKILFPAVLPAVLTG 224
                 ***************9 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.62
      LPAM_1   6 lalgalllLsG 16 
                 l+++a+ +L+G
  CTQ28663.1 234 LVIVAAEMLTG 244
                 67899889998 PP

  == domain 5  score: -4.0 bits;  conditional E-value: 3
      LPAM_1   4 illalga 10 
                 i++a+++
  CTQ28663.1 264 IIIAIVI 270
                 6899987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2211.77
//
Query:       CTQ28664.1  [L=418]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   9.8e-105  349.8   0.1   1.3e-104  349.4   0.1    1.1  1  NMT1_2      NMT1-like family
    7.3e-05   22.5   1.5    0.00023   20.9   1.5    1.9  1  TAT_signal  TAT (twin-arginine translocation) pathway signal 
     0.0019   18.2   0.0      0.014   15.3   0.0    2.0  2  NMT1        NMT1/THI5 like


Domain annotation for each model (and alignments):
>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.4   0.1  2.1e-108  1.3e-104       1     253 []      38     289 ..      38     289 .. 0.99

  Alignments for each domain:
  == domain 1  score: 349.4 bits;  conditional E-value: 2.1e-108
      NMT1_2   1 aapekeqlklGfialtdaaplvvakekglfakeGltvelekqaswaelrdkllagelDaahvltpapllidlGiggakadmkvlaslnlnGqaitlsnk 99 
                 ++pe++++++Gfi+ltd+apl++a+ kg+ +k+G+t+  +k+aswa++rdkl+agelDaah+l++++++++lGi+++++ m+ l++ln nGqaitls +
  CTQ28664.1  38 DKPEQTRVRVGFIPLTDCAPLAIAAAKGFDQKYGITLVASKEASWAAVRDKLVAGELDAAHILYGLLYGLELGIASKPQAMANLMTLNRNGQAITLSSE 136
                 689************************************************************************************************ PP

      NMT1_2 100 lkdkkvsdakalkdlvakkkaskplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvtalts 198
                 l++k+v+d  +lk+l++++ +  ++++a+tfp++th+++l+ywLa+aG+dp++dv++vvvpppqmv n++ g++ gfcvgePwna+a+++ iG+ta+ts
  CTQ28664.1 137 LQEKGVTDLGGLKRLIDRSAP-GSYTFAHTFPTGTHAMWLYYWLASAGIDPFNDVRTVVVPPPQMVMNMRIGNMSGFCVGEPWNARAINDRIGFTAATS 234
                 *******************99.9**************************************************************************** PP

      NMT1_2 199 qelwkdhPekvlgvredfveknpntaralvkalleAtkwldakkenraeaaklla 253
                 q++w++hPekvlg+r+d+ve+npntaralv al+eA++w+ a++en +e+a lla
  CTQ28664.1 235 QDIWPEHPEKVLGTRRDWVERNPNTARALVAALMEAQRWIAASPENTRETARLLA 289
                 ***************************************************9985 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   1.5   3.8e-08   0.00023       1      23 [.       6      28 ..       6      31 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.8e-08
  TAT_signal  1 klSRRdFLKgsAAaaAAaalggc 23
                ++SRR +L+++AA++ A++l+g+
  CTQ28664.1  6 SISRRRLLQAGAALGGAMLLPGV 28
                59*******************97 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.086   5.2e+02       3      37 ..      54      88 ..      53     135 .. 0.79
   2 !   15.3   0.0   2.4e-06     0.014     107     215 ..     174     280 ..     163     281 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.086
                GGHHHHHHHHTTHHHHTTEEEEEE--SSTTHHHHH CS
        NMT1  3 nhaglyvAkekGYFkeeGldVeivepadpsdatel 37
                + a+l +A++kG+ ++ G+ +   ++a  + + + 
  CTQ28664.1 54 DCAPLAIAAAKGFDQKYGITLVASKEASWAAVRDK 88
                66889999999999999998866655554444444 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.4e-06
                 HHHHHHHHTT--G.GG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT--.---SEEEEEEHHHHHH-HHHHHHHHHHHH CS
        NMT1 107 llkallakdggdp.sdvtlvnvggtslakalltgkvDaaiggyenwegvelesegkelrifaladlgvp.dyyslvlitnekllkenpelvkkFlrAlk 203
                  l   la++g+dp +dv +v v   ++   +++ ++  + g+  + e  ++++   ++ + a++  ++  +  + vl t  ++++ np++++++++Al 
  CTQ28664.1 174 WLYYWLASAGIDPfNDVRTVVVPPPQM---VMNMRIGNMSGFCVG-EPWNARAINDRIGFTAATSQDIWpEHPEKVLGTRRDWVERNPNTARALVAALM 268
                 555667777775337788887766665...566666666655555.6666665555555555555554449**************************** PP

                 HHHHHHHHSHHH CS
        NMT1 204 kGyeyalahPee 215
                 ++  +++a Pe+
  CTQ28664.1 269 EAQRWIAASPEN 280
                 **********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3269.17
//
Query:       CTQ28665.1  [L=393]
Description: Nitrate regulatory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-44  150.7   1.2    8.7e-44  150.7   1.2    2.4  3  NIT       Nitrate and nitrite sensing
    1.2e-18   66.6   5.1    5.7e-18   64.5   5.1    2.2  1  ANTAR     ANTAR domain
  ------ inclusion threshold ------
       0.39   11.4   4.3       0.89   10.3   1.3    2.8  3  DUF2203   Uncharacterized conserved protein (DUF2203)


Domain annotation for each model (and alignments):
>> NIT  Nitrate and nitrite sensing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3       1.3   7.9e+03      51      63 ..      19      32 ..       7      39 .. 0.42
   2 !  150.7   1.2   1.4e-47   8.7e-44       2     229 ..      42     277 ..      41     278 .. 0.87
   3 ?   -0.1   0.9      0.18   1.1e+03     142     179 ..     303     335 ..     279     378 .. 0.51

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
         NIT 51 rrldallra.ldqL 63
                rrl++ + + l+qL
  CTQ28665.1 19 RRLQKQQLQqLSQL 32
                33332211112232 PP

  == domain 2  score: 150.7 bits;  conditional E-value: 1.4e-47
         NIT   2 LvhaLQkERglsagylasgg....ge.rkaae.laaqraatDaalaalra.l.aglarrldallraldqLpalRrqvdtrkldakeavaaYtdviaaLl 92 
                 Lvh LQ ERg+s+ yl sgg    +e r++ + ++++ a   a l+++ra + ++l  r++++ ++l+qLpalR+q+  r++ a++a++++++vi++Ll
  CTQ28665.1  42 LVHMLQCERGASNIYLCSGGllytAEcRAGGAlVDERLALFYASLERARAvAgSALCWRIARAVDELAQLPALRAQIGRRQIAAEAATEQFSRVIRHLL 140
                 9*****************98876433444444455555555555555556688999*********************989******************* PP

         NIT  93 dladelaqgspdrelarqlralaalsrakEalsqerallaaalaagrfsaalyaaflslvarqqaalaefraaatpaqralydetvt.gpavkaaetlr 190
                 + a +l+++++d+ +a++l+al+ ++++kE ++qeral+a ++++g+fs++l++++ + +  qq  +++f+a ++pa  +l++   + g +++++++++
  CTQ28665.1 141 NIAPQLNDSIDDPPVAGRLVALYSFMQGKELVGQERALGALGFTRGEFSDSLRQQLVDRIDGQQPCFDSFQALGSPATVQLFRTQCHaGLDIEQLRRIA 239
                 ****************************************************************888*******************6488999999988 PP

         NIT 191 dr.lastggvdaed...e.eeWfaastaridqlravesrladdl 229
                  +  +      a+d   +  +Wf  +t+r++qlr+ve++l ddl
  CTQ28665.1 240 CTrQP------AADggeTaLRWFGLQTQRLEQLREVEEQLIDDL 277
                 77221......1223322566*********************97 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.18
         NIT 142 aalyaaflslvarqqaalaefraaatpaqralydetvt 179
                 + l +++l lv +q   l+++     ++q a+++++++
  CTQ28665.1 303 PRLDKQLLPLVRQQAYELQQL-----SSQLASLKDALE 335
                 444444555554444444444.....334444444443 PP

>> ANTAR  ANTAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   5.1   9.5e-22   5.7e-18       2      54 .]     329     381 ..     328     381 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 9.5e-22
                 HHHHHHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHCTTTS-HHHHHHHH- CS
       ANTAR   2 qLeealeeRklieqAkgiLmeryglsedeAfrlLrklSmdsnvklrevAeavv 54 
                  L++aleeRklie+Ak +Lm+++g+ e++A++ Lrk++md+n++++e+A+a++
  CTQ28665.1 329 SLKDALEERKLIEKAKSLLMTHQGMQEEQAWQTLRKMAMDKNQRMVEIARALL 381
                 699************************************************96 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.25   1.5e+03      60      98 ..      20      58 ..       3      58 .. 0.56
   2 ?   -1.6   0.0      0.73   4.4e+03      33      33 ..     105     105 ..      80     150 .. 0.59
   3 ?   10.3   1.3   0.00015      0.89       9      71 ..     307     378 ..     302     389 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.25
     DUF2203 60 aeieelveeieelGvevkdleaglvDFpakldgeevllC 98
                   ++ ++++++lG    +l+a++    +++   +++lC
  CTQ28665.1 20 RLQKQQLQQLSQLGELASQLSALVHMLQCERGASNIYLC 58
                333455666666666666665544455566666666666 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.73
     DUF2203  33 e 33 
                 +
  CTQ28665.1 105 V 105
                 1 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00015
     DUF2203   9 nalLpllkelleelralrkeleeleeeleeakaeaekse.........aaeleaeleeleaeieelveeiee 71 
                 ++lLpl++++  el++l ++l++l+++lee k  +++++         ++++ ++l+++++  ++ + ei +
  CTQ28665.1 307 KQLLPLVRQQAYELQQLSSQLASLKDALEERKLIEKAKSllmthqgmqEEQAWQTLRKMAMDKNQRMVEIAR 378
                 689***********************9999988776666788766555444445555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1171  (0.0653132); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2861.84
//
Query:       CTQ28666.1  [L=117]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-22   80.5   0.1    1.3e-22   80.3   0.1    1.0  1  DrsE      DsrE/DsrF-like family


Domain annotation for each model (and alignments):
>> DrsE  DsrE/DsrF-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.1   7.4e-27   1.3e-22       2     117 .]       3     117 .]       2     117 .] 0.94

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 7.4e-27
                 EEEEEE-S-TTTBSHHHHHHHHHHHHHTTT..-EEEEEE-GGGGGGGBS---TGGGTS---GGGGGGCGGGT-EEEEEHHHHHHTT--GGGE-T-.-EE CS
        DrsE   2 kvfilvtggpygseaarealelalaaaalg..hevsvffygdGvllllkgqtanpadeknlaellkalkeygvklyvCgqaakargldededlgv.gve 97 
                 +++i+ +g+ ygse+ + +l+la a++++   +++++f++ d+v++ l+gq  +pa+++n++++l+ l +++v++ +C+++a+ rg+++   l v gve
  CTQ28666.1   3 RIVIIANGAAYGSESLFNSLRLAIALREQQsdLDLKLFLMSDAVTAGLRGQ--KPAEGYNVQQMLEILTAQQVPVKLCKTCADGRGVSAL-PL-VdGVE 97 
                 6899**********************999999*****************77..6777*******************************65.55.45*** PP

                 EE-HHHHHHHHHH-SEEEE- CS
        DrsE  98 vsglgelaelqnegdrvitf 117
                 v++l ela++ + +d+v+tf
  CTQ28666.1  98 VGTLVELAQWTLAADKVLTF 117
                 *******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 930.41
//
Query:       CTQ28667.1  [L=80]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-06   27.2   0.0    1.9e-05   24.5   0.0    1.9  1  DUF1883   Domain of unknown function (DUF1883)


Domain annotation for each model (and alignments):
>> DUF1883  Domain of unknown function (DUF1883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     1e-09   1.9e-05      14      87 ..      13      79 ..       4      80 .] 0.89

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1e-09
                T-------SSS-------HHHHHHHHHHTT---S-----SSS------SSS--------TTSSS---------- CS
     DUF1883 14 geivevelsaaanvrLmdssnfrsfkngrrhkylGGlakksPvrltvpesghWhvviDleglrGsvrssvkvle 87
                g++++v++s++++++Lm ++       g  h  +  + ++  + ltvp sg+W+v iD +++  s ++s++ ++
  CTQ28667.1 13 GDTLVVRCSERCHIHLMSAK-----VPGDSHADILSVQDRDSAYLTVPYSGTWNVLIDSHSQ--SLEHSISYVP 79
                899**************987.....57999999999**********************9987..7788888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 582.97
//
Query:       CTQ28668.1  [L=226]
Description: regulatory protein for cation transport [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-53  180.5   0.0    3.8e-53  180.2   0.0    1.1  1  ChaC      ChaC-like protein
     0.0036   17.9   0.0     0.0054   17.3   0.0    1.2  1  GGACT     Gamma-glutamyl cyclotransferase, AIG2-like


Domain annotation for each model (and alignments):
>> ChaC  ChaC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.2   0.0   4.2e-57   3.8e-53       1     177 [.      47     214 ..      47     216 .. 0.95

  Alignments for each domain:
  == domain 1  score: 180.2 bits;  conditional E-value: 4.2e-57
                 EEEEESSHHHHS--TT-SEEEEEEEETEEEEEEEEESSSSS-SSS-EEEEEEEEHHH-EEEEEEEEE-GGGGGGGGGGGGGSTT..TTEEEEEEEEEE- CS
        ChaC   1 lwvfgYGSLiwkpdfeytesrravihgyaRrfwlsstdhRGteekPGrvltLiedeegstiGvvyripaeeaeevleyLeeRElvtnGytlkevevylk 99 
                 +w+fgYGSLiw+p+ +y+es+++++ g++R+f+l+ t+ RG++ +PGr+l+L+e+  g+t+Gv+yr+p ++ ee+l+ L++RE++t+    + ++ ++k
  CTQ28668.1  47 VWIFGYGSLIWNPALNYRESCTGTLPGWHRAFCLRLTAGRGSACQPGRMLALKEG--GRTTGVAYRLPDDTLEEELTLLWKREMITG----CYLPTWCK 139
                 7*****************************************************7..***************************887....66788887 PP

                 EETTTS-EEEEEEEEEE-TTSTTB--S--HHHHHHHHHH-EETTEEHHHHHHHHHHHHHTS-----BHHHHHHHHHHH CS
        ChaC 100 kdakeekvvlealvyvatikneqyagdedleeiAkviaaaaGpsGsnaeYlfelakaleklgigirDehLeeleelvk 177
                  + +++++ ++alv++++++++ +++d+ ++ iA +ia+a+Gp G+na+Ylf+l++al+klg  ++D  L +l+++v+
  CTQ28668.1 140 LELDDGRT-VNALVFIMDPRHPLFEPDTSAQVIAPLIARASGPLGTNAQYLFSLEQALRKLG--MHDASLDDLVASVR 214
                 77555555.8***************************************************7..**********9997 PP

>> GGACT  Gamma-glutamyl cyclotransferase, AIG2-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     6e-07    0.0054       1     105 [.      49     157 ..      49     170 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6e-07
                 EEESSTTSTTSCCCHHHHCSECEEEEEEEECCTBEEEE.....ET.TT...EEEE..TTSSE.EEEEEEEE-H....HHHHHHHHCT.TTTTSEEEEEE CS
       GGACT   1 vFvYGtLkrgepnhqrlllgarflesgpatlkgyrlyd....lgg.ky...palv..pgdgekVkGelyevdd....eelarLDelEpeepseYereev 85 
                 +F YG+L    +n    l   +++es + tl+g+++      ++g +    p+ +   ++g++ +G++y++ d    eel  L + E   ++ Y  + +
  CTQ28668.1  49 IFGYGSLI---WNPA--L---NYRESCTGTLPGWHRAFclrlTAGrGSacqPGRMlaLKEGGRTTGVAYRLPDdtleEELTLLWKRE-MITGCYLPTWC 138
                 68899999...4433..2...233444444444443322222323122235443355677888********77678788999*****.99*******88 PP

                 EEEC.TTS-EEEEEEEEETT CS
       GGACT  86 kvevledgeqveawvYvyag 105
                 k+e+ +dg++v+a v+++++
  CTQ28668.1 139 KLEL-DDGRTVNALVFIMDP 157
                 8888.*************66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1780.30
//
Query:       CTQ28669.1  [L=76]
Description: putative conserved cation transport regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-28   96.7   6.7      1e-27   96.4   6.7    1.1  1  ChaB      ChaB


Domain annotation for each model (and alignments):
>> ChaB  ChaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   6.7   5.8e-32     1e-27       1      60 []       9      75 ..       9      75 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 5.8e-32
        ChaB  1 LPesvresLpehAqeifveafnsaleeY.d......desdeerAhrvAwaavkekYekdedgkWekk 60
                LP+sv++ Lp hAqei++eafnsa+++Y d      d+s+ee+Ah+vAwaavk++Yek++d+kW+kk
  CTQ28669.1  9 LPDSVQHVLPAHAQEIYKEAFNSAWDQYkDkderrdDASREETAHKVAWAAVKNSYEKGDDDKWHKK 75
                8***************************77***********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1034  (0.0576719); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 566.99
//
Query:       CTQ28670.1  [L=366]
Description: calcium/sodium:proton antiporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-22   80.5  39.2    9.5e-15   54.9  17.3    2.2  2  Na_Ca_ex       Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9  17.3   5.3e-19   9.5e-15       3     150 ..      40     190 ..      38     191 .. 0.96
   2 !   31.6  14.0   7.7e-12   1.4e-07       3     149 ..     224     364 ..     222     366 .] 0.84

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 5.3e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT..HHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCEC CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltge..vdlaignvlGsnifnlllviGlialigslkvdsesl 99 
                 +++ il+l++i  +a+ +v++a+++a   +  g+++G ++l+l++ + E+ ++ + ++tg   ++l ++++++ +++++++ +G+++l+g+  +   ++
  CTQ28670.1  40 IAINILALVGILSSAFSVVRHADVLA---HRLGEPYGSLILSLSVVILEVSLISALMATGDaaPTLMRDTLYSIIMIVTGGLVGFSLLLGG-RKFATQY 134
                 5678999*******************...9*****************************999*****************************.8888888 PP

                 CHHHHHHHHHHHHHHHHHHHTCHHHHH.....HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 100 kldlgllllvallllllvlllllplfv.....pgrltvleglvllllYalylvlsl 150
                 ++ +g+++++++l+ l++++l++p+++     ++ +++l++++ +++Y+++l++++
  CTQ28670.1 135 MNLFGIKQYLIALFPLAIIVLVFPMALpganfSTGQSLLVAVISAAMYGVFLLIQT 190
                 8888*********************99***************************97 PP

  == domain 2  score: 31.6 bits;  conditional E-value: 7.7e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkl 101
                 ++++++ l+++++ +++  + +e + +s++ + ++ G  l+Al   +pE + ++ a+l+++v+ a++  +Gs+++ + l+++++ li  +   +++l +
  CTQ28670.1 224 TAWLLVHLVAVIAVTKMNANPLETLLTSMNAPVAFTGF-LVALLILSPEGLGALKAVLNNQVQRAMNLFFGSVLATISLTVPVVTLI--AFLTGNELRF 319
                 56777778888888888888888888888999999998.************************************************..4566666788 PP

                 HHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 102 dlgllllvallllllvlllllplfvpgrltvleglvllllYalylvls 149
                  lg+  +v++++    l+l+ + f +gr +vl+g+++++l+a+yl   
  CTQ28670.1 320 GLGAPEMVVMVA---SLVLCHISFSTGRTNVLNGAAHMALFAAYLMTI 364
                 887755555555...44555677789******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2697.54
//
Query:       CTQ28671.1  [L=284]
Description: 3-deoxy-D-manno-octulosonate 8-phosphate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.5e-69  231.6   0.0    8.7e-69  231.4   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.4   0.0   4.9e-73   8.7e-69      10     274 ..      10     275 ..       2     276 .. 0.97

  Alignments for each domain:
  == domain 1  score: 231.4 bits;  conditional E-value: 4.9e-73
                   HCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S..SSTTS-SHTTHHHTHHHHHHHHHHHT-EEEEEESSCCTHHH CS
  DAHP_synth_1  10 diliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKp.RrstvgfkGlindpdlkilsrikkelglpiatevldpisvqy 105
                   di   +d +++++ G++++e+++ a+ ++e++  +++kl   ++++++a+f+K+ R+s+++++G+++++++ki+++ k+++g++i+t+v++ +++q 
    CTQ28671.1  10 DINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLG--IPYVFKASFDKAnRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEASQAQP 104
                   778889********************************99..******************************************************* PP

                   HHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TTHHHHHHHHHHHHHHHTTEEE--EEEEEEEEEESTSSSSSCHCHHHHHHHHHHCTSS-EE CS
  DAHP_synth_1 106 ladvvdiiqiGArttesqdllelasglskpvglKngtdvaidemkaaaekilflgvetkgiilcerglrggkktnrdvedvaavkilkeetgklpvm 202
                   +advvd+iq++A++++++dl+e+++++ +++++K+ ++v++ +m ++ +k  + g  ++++ilc rg  +g+   + v d+  + ++k+++++ pv+
    CTQ28671.1 105 VADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFIEGG--NDKVILCDRGANFGY--DNLVVDMLGFGVMKKASNNSPVI 197
                   *******************************************************..7**************..9****************999*** PP

                   EESCHHHTTCG......GGGHHHHHHHHHHHHHTTESEEEEEBBSSCCC-SSTGGGGBBCTCBHHHHHHHHHHHHHHH CS
  DAHP_synth_1 203 vDvsHansrkd......ykrqkkvlklakaaiaaGiaGvmiEshlnpgkalsdgkqalkygksetdacilkeltelll 274
                   +Dv+Ha + +d      ++r+++v +la+a++a+GiaG++iE+h++p++a++dg++al ++k+e + +++k  ++l++
    CTQ28671.1 198 FDVTHALQCRDpfgaasGGRRAQVSELARAGMAVGIAGLFIEAHPDPDHAKCDGPSALPLDKLEPFLKQMKAIDDLVK 275
                   *********************************************************************999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2170.24
//
Query:       CTQ28672.1  [L=270]
Description: putative transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-40  136.3   0.0    8.4e-40  135.9   0.0    1.2  1  Transglut_core2  Transglutaminase-like superfamily
    1.9e-25   88.8   1.0    1.9e-25   88.8   1.0    2.2  3  TPR_9            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Transglut_core2  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.0   9.4e-44   8.4e-40       3     154 ..      34     185 ..      32     186 .. 0.96

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 9.4e-44
  Transglut_core2   3 vlaeLdalaaevraelsseraaaekleaLnellyeelgFagneddyydprnslldqVLerrrGiPislsvvylevArrlglplegvgfPghflv 96 
                      v++eL++l + +++e++   ++++++e L+el+y+e+gF  ++  y+ ++ ++ld+VL +r+G  +sl++++l +A+rl lp+ +v fP+++l+
       CTQ28672.1  34 VEEELQRLLRLAQEEIAPSWDQERQIERLLELFYDEWGFGASQGVYRLSDALWLDKVLVNRQGSAVSLGAILLWIAQRLALPVVPVIFPTQMLL 127
                      6789****************************************************************************************** PP

  Transglut_core2  97 rvg.espegevliDPfnaGrllskedleellraalgaeaeltreflapasnrdvltRll 154
                      r++ e+ e+ +li+Pfn G++l++++le +l++++g+ ael +e+l++a+n +v+++ll
       CTQ28672.1 128 RADpETSEEMWLINPFN-GETLDEHTLEVWLKGNIGPVAELFNEDLDEADNAEVIRKLL 185
                      *995444555*******.**************************************998 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.49   4.4e+03      64      64 ..      55      55 ..      36      70 .. 0.52
   2 ?   -3.8   0.0       1.7   1.5e+04      61      72 ..     174     185 ..     169     185 .. 0.76
   3 !   88.8   1.0   2.2e-29   1.9e-25       1      73 []     188     260 ..     188     260 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.49
       TPR_9 64 d 64
                +
  CTQ28672.1 55 Q 55
                1 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.7
       TPR_9  61 dapdaeairaqL 72 
                 +a+ ae ir++L
  CTQ28672.1 174 EADNAEVIRKLL 185
                 678889998876 PP

  == domain 3  score: 88.8 bits;  conditional E-value: 2.2e-29
       TPR_9   1 lkaiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeairaqLn 73 
                 lk+++++e+++e al+++e ll+++P+dp+e+rdRGl++aql+c ++Al dL ++++++p++p  e+iraq+n
  CTQ28672.1 188 LKSALMEERQMELALRASEALLQFNPEDPYEIRDRGLIYAQLDCDHVALLDLSYFVEQCPEDPISEMIRAQIN 260
                 899********************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2199.57
//
Query:       CTQ28673.1  [L=130]
Description: putative membrane protein; putative component of transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-40  137.4   6.1    2.6e-40  137.3   6.1    1.0  1  SirB      Invasion gene expression up-regulator, SirB
    0.00047   18.9   7.5    0.00055   18.7   7.5    1.0  1  DUF2339   Predicted membrane protein (DUF2339)
  ------ inclusion threshold ------
       0.11   12.5   1.0       0.24   11.4   1.0    1.5  1  Ac76      Orf76 (Ac76)
       0.21   11.3   0.8       0.31   10.7   0.8    1.2  1  DUF2981   Protein of unknown function (DUF2981)
          3    6.7  10.6       0.59    9.0   3.0    2.0  2  DUF3488   Domain of unknown function (DUF3488)


Domain annotation for each model (and alignments):
>> SirB  Invasion gene expression up-regulator, SirB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.3   6.1   7.2e-44   2.6e-40       2     119 ..       5     126 ..       4     127 .. 0.96

  Alignments for each domain:
  == domain 1  score: 137.3 bits;  conditional E-value: 7.2e-44
        SirB   2 lalkhlHlllvllslllFilrgllllkgsallqkkllkilphivdtlLllsgiaLlvllglspftka..WltaKlvllvvyivlgvval..krakskkl 96 
                 +a+ +lH+++v++s+ lF+lr+++++ +s+ll++++++i+ph++dtlL+lsg +L++++++ pft++  Wlt+Kl+++++yi+lg++al  +r +s++ 
  CTQ28673.1   5 TAVLYLHIATVAVSVGLFVLRYWWMYHQSPLLNQRWVRIAPHCSDTLLFLSGAGLMAITHYLPFTEDgaWLTEKLFGVIIYIALGFIALgrRRPRSQQS 103
                 6899************************************************************76668********************877889**** PP

        SirB  97 rllafvlAlvvflyivslAltks 119
                 r++af+lAlvv+++i++lA+t+ 
  CTQ28673.1 104 RFIAFLLALVVLFIIIQLAITRI 126
                 ********************985 PP

>> DUF2339  Predicted membrane protein (DUF2339)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   7.5   1.5e-07   0.00055     380     491 ..      11     121 ..       2     129 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.5e-07
     DUF2339 380 lllgyglpaaalalaawllrrre.....dklarvleaa.allllllllavelryalaggllfagswaslaeallalpvlvllalallllarrrasasla 472
                  +++++++  +++l +w++++++     ++++ + ++  +ll+l  + +++    + ++l f ++ a+l+e   ++ v++++al++++l+rrr +++++
  CTQ28673.1  11 HIATVAVSVGLFVLRYWWMYHQSpllnqRWVRIAPHCSdTLLFLSGAGLMA----ITHYLPFTEDGAWLTEK--LFGVIIYIALGFIALGRRRPRSQQS 103
                 4677788899**********8889887666666666641333333333333....4445567779999999*..9999999**********98766665 PP

     DUF2339 473 slyragaalllllalllll 491
                 + ++a   +l++l+++  l
  CTQ28673.1 104 R-FIAFLLALVVLFIIIQL 121
                 5.43444444444444333 PP

>> Ac76  Orf76 (Ac76)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.0   6.8e-05      0.24       6      40 ..      81     119 ..      77     126 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.8e-05
        Ac76   6 llialivlafil....dkneklsellltllllfvlFiil 40 
                  +i+ i+l+fi        ++ s ++ +ll l+vlFii+
  CTQ28673.1  81 GVIIYIALGFIAlgrrRPRSQQSRFIAFLLALVVLFIII 119
                 677788888885322112346899999********9985 PP

>> DUF2981  Protein of unknown function (DUF2981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.8   8.7e-05      0.31      12      77 ..      53     119 ..      49     127 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.7e-05
     DUF2981  12 lLlGvslYlvlhYLhPsLhkvawl...llgvnaisavlGflGalkRslvveavYlvfylislvlvvltv 77 
                 +L G  l ++ hYL P   + awl   l+gv +i   lGf+ + +R    +   ++ +l++lv++++++
  CTQ28673.1  53 FLSGAGLMAITHYL-PFTEDGAWLtekLFGV-IIYIALGFIALGRRRPRSQQSRFIAFLLALVVLFIII 119
                 799**********9.8888999983334444.455669***9998887776666666666666666554 PP

>> DUF3488  Domain of unknown function (DUF3488)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.0   0.00017      0.59      13      65 ..       3      63 ..       1      73 [. 0.74
   2 ?    3.1   2.1     0.011        39       8      61 ..      60     118 ..      50     128 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00017
     DUF3488 13 llplalrlplwvlllaalllvwrl.llarrraplpsrwll.......lllallavalllls 65
                l++ +l+l++ +++++++l+v+r+ +++ ++  l +rw++       +ll l +++l++++
  CTQ28673.1  3 LFTAVLYLHIATVAVSVGLFVLRYwWMYHQSPLLNQRWVRiaphcsdTLLFLSGAGLMAIT 63
                677899******************8888888888889*99666665444444444555444 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.011
     DUF3488   8 alalallplalrlplwvlllaalllvwrl.llarrraplps...rwlllllallav.al 61 
                 +++  +lp  +   + +  l+++++ + l ++a +r+++ s   r++ +llal+++ ++
  CTQ28673.1  60 MAITHYLPFTEDGAWLTEKLFGVIIYIALgFIALGRRRPRSqqsRFIAFLLALVVLfII 118
                 44455555555555555566666666555555444444444122444444444443222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1034  (0.0576719); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1013.50
//
Query:       CTQ28674.1  [L=283]
Description: N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-21   76.8   0.0    2.1e-21   76.3   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
      3e-19   69.4   2.2    4.7e-19   68.8   1.1    1.9  1  PrmC_N           PrmC N-terminal domain
    1.6e-16   60.3   0.1    1.1e-15   57.6   0.0    1.9  2  MTS              Methyltransferase small domain
    1.1e-09   38.9   0.1    6.4e-09   36.4   0.0    2.1  2  Methyltransf_25  Methyltransferase domain
    4.2e-07   29.9   0.0      4e-06   26.8   0.0    2.2  1  Methyltransf_23  Methyltransferase domain
    5.4e-07   29.2   0.0    8.4e-07   28.6   0.0    1.2  1  Methyltransf_4   Putative methyltransferase
    8.4e-07   29.6   0.0    1.4e-05   25.6   0.0    2.4  1  Methyltransf_11  Methyltransferase domain
    6.8e-06   26.7   0.0    4.7e-05   24.1   0.0    2.0  2  Methyltransf_12  Methyltransferase domain
    9.4e-05   21.9   0.0    0.00013   21.4   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00015   21.5   0.0    0.00024   20.8   0.0    1.3  1  UPF0020          Putative RNA methylase family UPF0020
    0.00019   21.2   0.0    0.00027   20.7   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
    0.00024   20.7   0.0    0.00035   20.2   0.0    1.1  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
    0.00035   20.3   0.0     0.0007   19.3   0.0    1.4  1  Cons_hypoth95    Conserved hypothetical protein 95
    0.00041   20.2   0.0    0.00058   19.7   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0013   18.0   0.0     0.0045   16.3   0.0    1.8  2  Methyltransf_2   O-methyltransferase domain
     0.0068   16.4   0.0     0.0096   15.9   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
  ------ inclusion threshold ------
      0.011   15.7   0.0       0.02   14.8   0.0    1.4  1  Methyltransf_18  Methyltransferase domain
      0.014   14.9   0.0      0.023   14.1   0.0    1.3  1  TehB             Tellurite resistance protein TehB
      0.046   12.6   0.0      0.062   12.2   0.0    1.2  1  GATase_4         Glutamine amidotransferases class-II
       0.09   12.1   0.0        0.3   10.4   0.0    1.7  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
        0.1   11.8   0.0       0.15   11.2   0.0    1.2  1  Methyltransf_3   O-methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   2.4e-24   2.1e-21       4     119 ..     111     247 ..     108     272 .. 0.88

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 2.4e-24
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsn............... 81 
                       +r+lDlG+GtG+++++la   +p++ev+ +D  ++a+ lA  na++lg+ nv+ +q+d+++ l      ++f  i+sn               
       CTQ28674.1 111 PCRILDLGTGTGAIALALA-SERPDCEVTAVDVMPDAVALALRNAEHLGIANVTISQSDWFSaLA----GQRFATIVSNppyidaadphlaegd 199
                      689****************.669***************************************555....489***********99999999999 PP

  Methyltransf_31  82 ...evl.......naladpdkileeiervlkpggilliedprllaelp 119
                         e+l       + lad++ i++e  ++l+pgg +l+e+ +++ e  
       CTQ28674.1 200 vrfEPLtalvagdQGLADLAHIIREGRQYLQPGGWMLLEHGWTQGEAV 247
                      99944455589*******************************666544 PP

>> PrmC_N  PrmC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   1.1   5.5e-22   4.7e-19       2      71 .]       7      74 ..       6      74 .. 0.99

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 5.5e-22
      PrmC_N  2 aLreaearLkaagieeaeldAelLlahvlglsrsdlllrgerelteeqlerfeelierRaarePlqyIlG 71
                +L++a+arL+++  ++++ dAe+Ll hv+g  r+++l+ ge+ l++++++++e+l+ rR+++eP+++++G
  CTQ28674.1  7 WLQQAIARLAES--DSPRRDAEILLGHVTGRARTWILAFGETTLSADEAAKLEALLVRRQRGEPIAHLVG 74
                9**********9..******************************************************99 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   1.3e-18   1.1e-15      27     110 ..     107     190 ..      96     198 .. 0.89
   2 ?    0.3   0.0      0.52   4.5e+02     119     136 ..     219     236 ..     210     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 1.3e-18
                 CHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEEE---STTT CS
         MTS  27 lpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdlivsNPPfhag 110
                 lp+ +  ++lDlG+G+G++++ala+e p+ evt+vdv   A+++a +n+e+ +++ v++ +sd +++++ ++f +ivsNPP+ + 
  CTQ28674.1 107 LPT-APCRILDLGTGTGAIALALASERPDCEVTAVDVMPDAVALALRNAEHLGIAnVTISQSDWFSALAGQRFATIVSNPPYIDA 190
                 555.3446**********************************************99*************************8665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.52
                 HHHHHHHHHHEEEEEEEE CS
         MTS 119 eeliaeAkeaLkegGeLl 136
                  ++i+e +++L++gG +l
  CTQ28674.1 219 AHIIREGRQYLQPGGWML 236
                 5799***********776 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   7.5e-12   6.4e-09       1      71 [.     114     184 ..     114     199 .. 0.86
   2 ?   -0.5   0.0       2.4   2.1e+03      81      97 .]     217     233 ..     207     233 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 7.5e-12
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvss 71 
                      +LdlG+GtG ++lala + ++++vt+vD+ +++++ a ++ae+ g+ nv++ q d  +   + ++f  +vs+
       CTQ28674.1 114 ILDLGTGTGAIALALASERPDCEVTAVDVMPDAVALALRNAEHLGIaNVTISQSDWFSAL-AGQRFATIVSN 184
                      8*****************879*********************99999*******995543.45578877774 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.4
                      HHHHHHHHHHHHEEEEE CS
  Methyltransf_25  81 dlekalkeiarvLkpgG 97 
                      dl+++++e ++ L+pgG
       CTQ28674.1 217 DLAHIIREGRQYLQPGG 233
                      788999**********9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   4.7e-09     4e-06      10     138 ..     101     259 ..      93     272 .. 0.66

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 4.7e-09
  Methyltransf_23  10 sdklerllpklraggrvLdiGcGtGillevl.ren.gfsvtgvDlspeaveiae.........kakkaqkdqfdeqeaaepqgkfdlIvlrevl 92 
                       ++l+rl+    a+ r+Ld+G+GtG  +  l +e+  ++vt+vD +p av++a          +   +q+d f   +a   q +f +Iv++   
       CTQ28674.1 101 EQALARLP---TAPCRILDLGTGTGAIALALaSERpDCEVTAVDVMPDAVALALrnaehlgiaNVTISQSDWF---SALAGQ-RFATIVSNPPY 187
                      44445554...6888**********7666662444346*************9977777776665555555555...333344.55555555444 PP

  Methyltransf_23  93 ehvpdpp.........................ellrqiatllkpgGylllse.plaslkedrllldwlylvp 138
                          dp+                         + +r  +++l pgG++ll+  +++  + + l+++ +yl+ 
       CTQ28674.1 188 IDAADPHlaegdvrfepltalvagdqgladlaHIIREGRQYLQPGGWMLLEHgWTQGEAVRALFREAGYLDV 259
                      444444447777777777777777777776668888888899999999887643333345555666666655 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   9.8e-10   8.4e-07       5      64 ..     114     173 ..     111     186 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 9.8e-10
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHH CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvl 64 
                     +l++G+G G + +alA ++Pd+++ ++++  + va +l+++e+l++ N+ i ++d +  l
      CTQ28674.1 114 ILDLGTGTGAIALALASERPDCEVTAVDVMPDAVALALRNAEHLGIANVTISQSDWFSAL 173
                     79**************************************************99976554 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.7e-08   1.4e-05       1      94 [.     115     235 ..     115     237 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.7e-08
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES.-CCC-C............... CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvsse.vlhhve............... 75 
                      Ld+G+GtG++a ala+    ++v++vD+ + +++la ++a+  g+ +v++ ++d  +  ++ + f  +vs+   ++  +               
       CTQ28674.1 115 LDLGTGTGAIALALASERpdCEVTAVDVMPDAVALALRNAEHLGIaNVTISQSDWFS-ALAGQRFATIVSNPpYIDAADphlaegdvrfeplta 207
                      8**************55558****************999999999999999999887.788888888888874333332345566677777777 PP

                      .........CHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11  76 .........dpekalkeiaRvLkpgGll 94 
                               d++++++e ++ L+pgG++
       CTQ28674.1 208 lvagdqglaDLAHIIREGRQYLQPGGWM 235
                      7777777778888888888888888876 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   5.5e-08   4.7e-05       1      70 [.     115     181 ..     115     196 .. 0.80
   2 ?    0.2   0.0       1.6   1.3e+03      79      98 ..     215     234 ..     205     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 5.5e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlv 70 
                      L++G+GtG+++ al+ + pd+e+t+vD+ p+a+   +  l+  e +  +nv++ + d ++   g+ f ++
       CTQ28674.1 115 LDLGTGTGAIALALASERPDCEVTAVDVMPDAV---ALALRNAEHLGIANVTISQSDWFSALAGQRFATI 181
                      8********************************...5555555555677888877776665555555555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.6
  Methyltransf_12  79 lkdirevldnirklLkpgGr 98 
                      l+d++ ++++ r+ L pgG+
       CTQ28674.1 215 LADLAHIIREGRQYLQPGGW 234
                      57899999999********8 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.6e-07   0.00013     153     233 ..     102     184 ..      95     185 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.6e-07
        PrmA 153 ealeklvkegeevlDvGtGSGiLaia.aakLgakkvvavDiDevAvkvakeNaelNkvea.klevalseellk...eekadvivaN 233
                 +al +l  +  ++lD+GtG+G +a+a a+     +v+avD+ + Av  a +Nae  ++++  ++   +++ ++    +++  iv+N
  CTQ28674.1 102 QALARLPTAPCRILDLGTGTGAIALAlASERPDCEVTAVDVMPDAVALALRNAEHLGIANvTIS---QSDWFSalaGQRFATIVSN 184
                 678888888899*********99998444556679*******************9988884442...2222211224566666666 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.9e-07   0.00024      69     135 ..     127     191 ..      98     200 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.9e-07
                 HHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GG.GEEEEE--GGG--STTS---EEEE-------- CS
     UPF0020  69 aeeearaelklygsDldrrvvqgareNaekagvgd.liefsqadaakLrlkegevdvivtnpPYGerl 135
                 a +++r++ ++ ++D  + +v+ a +Nae+ g+++ +i++s++ + +L   +  + +iv+npPY ++ 
  CTQ28674.1 127 ALASERPDCEVTAVDVMPDAVALALRNAEHLGIANvTISQSDW-FSALA-GQ-RFATIVSNPPYIDAA 191
                 4456678999***********************8614555554.55577.44.79*********7765 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.2e-07   0.00027      46     112 ..     110     174 ..      97     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.2e-07
  Methyltransf_16  46 sklsvlELGsGtGlvGlavaellpeakviltDl.eellellkknielnknalkskvkvevLdWgeele 112
                      +++++l+LG GtG + la+a+  p+++v+  D+ ++++ l  +n e    +   +v++++ dW   l 
       CTQ28674.1 110 APCRILDLGTGTGAIALALASERPDCEVTAVDVmPDAVALALRNAEH---LGIANVTISQSDWFSALA 174
                      6899*************************999625688888888877...456788888888877665 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   4.1e-07   0.00035       4      70 ..     114     181 ..     112     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.1e-07
  Methyltransf_15   4 ilDlfsGaGGnviqfalv..fekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklkleki 70 
                      ilDl +G+G  + ++a +   ++v a+++ ++ +a+a +Nae  g++ ++t+ + d+f++la  ++++i
       CTQ28674.1 114 ILDLGTGTGAIALALASErpDCEVTAVDVMPDAVALALRNAEHLGIA-NVTISQSDWFSALAGQRFATI 181
                      89999999999999999877689*********************997.69*************999877 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   8.2e-07    0.0007      42     126 ..     111     190 ..      97     200 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8.2e-07
                    C-EEEETT-TTSHHHHHHHH.TT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTT CS
  Cons_hypoth95  42 garvLDlfaGsGalglEAlS.RgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyake 126
                     +r+LDl  G+Ga++l  +S R   ++++v+  + av++  +n e+l++ + +++ + d ++al     ++++f  +  +PPy + 
     CTQ28674.1 111 PCRILDLGTGTGAIALALASeRPDCEVTAVDVMPDAVALALRNAEHLGIAN-VTISQSDWFSAL-----AGQRFATIVSNPPYIDA 190
                    6899************988768888***********************886.444444444444.....3458**********765 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   6.8e-07   0.00058      47     132 ..      82     168 ..      56     175 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.8e-07
                 -EEEETTEEE--HHHHHHHHHHTT.-.-TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES- CS
        PCMT  47 plsigynatiSaphmvalalelle.l.kkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgD 132
                 pl ++  + i  p +  l+ + l  l ++  r+L++G+G+G  +  la   ++++ v +++ +++ v+ a rn ++l+++nv++  +D
  CTQ28674.1  82 PLFVSPATLIPRPDTECLVEQALArLpTAPCRILDLGTGTGAIALALAS-ERPDCEVTAVDVMPDAVALALRNAEHLGIANVTISQSD 168
                 5555566666667777777777766424568**********99888876.599*******************************9998 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.3e-06    0.0045      65     121 ..     113     170 ..      96     179 .. 0.83
   2 ?   -1.5   0.0       1.5   1.3e+03      93     108 ..     217     232 ..     214     253 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.3e-06
                     EEEEET-TTSHHHHHHHHH-TT-EEEEEE.-HHHHHHHHHHS-----TTEEEEES-TT CS
  Methyltransf_2  65 slvDvGGGtGalakaivsayPtikvivfD.lpeVveaAkehlsageeervefvgGdff 121
                     +++D+G GtGa+a a +s  P ++v+  D +p+ v+ A +  +     +v+  + d f
      CTQ28674.1 113 RILDLGTGTGAIALALASERPDCEVTAVDvMPDAVALALRNAEHLGIANVTISQSDWF 170
                     689**************************55999999988766666667777777766 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.5
                     E-HHHHHHHHHHS--- CS
  Methyltransf_2  93 DlpeVveaAkehlsag 108
                     Dl++++++ +++l++g
      CTQ28674.1 217 DLAHIIREGRQYLQPG 232
                     9999999999998765 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.1e-05    0.0096      14      79 ..     101     161 ..      96     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-05
  Methyltransf_32  14 akllkelakesgaltvvDvGaGkgYLsfvlalkeke.yklkvvgidakeelvekaekraeklgkkfn 79 
                      +++l++l   +++++++D+G G g  + +la+   e   ++v+++d+  + v+ a + ae+lg  +n
       CTQ28674.1 101 EQALARL--PTAPCRILDLGTGTGAIALALAS---ErPDCEVTAVDVMPDAVALALRNAEHLG-IAN 161
                      5555553..67899******************...4379**********************99.333 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.4e-05      0.02      12      86 ..     108     181 ..     102     183 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.4e-05
  Methyltransf_18  12 vekgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklkeeevdtv 86 
                       +   r++D Gt  g ++++l++e+   +v+a+D+ + +++ a +n+e+ g+  ++++  sd +++l  + + t+
       CTQ28674.1 108 PTAPCRILDLGTGTGAIALALASERPDCEVTAVDVMPDAVALALRNAEHLGIA-NVTISQSDWFSALAGQRFATI 181
                      5556699*******************************************995.689999998888876555555 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.7e-05     0.023      30     101 ..     110     183 ..      96     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.7e-05
                 -S-EEEEES-TTSHHHHHHHHT..T-EEEEEES-HHHHHHHHHHHHHTT-TTEEEEE--GGG----S-EEEEEE CS
        TehB  30 kpgkvldlgcgqgrnslylsll..gydvtawdknensiafleeikekenlknistalydineaklderydfils 101
                  p+++ldlg g g  +l l+      +vta+d   +++a   + +e+  + n++ +  d  +a   +r+  i+s
  CTQ28674.1 110 APCRILDLGTGTGAIALALASErpDCEVTAVDVMPDAVALALRNAEHLGIANVTISQSDWFSALAGQRFATIVS 183
                 7******************98722578************99999999999999999999988888888888887 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.3e-05     0.062     141     211 ..     128     202 ..     123     253 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.3e-05
    GATase_4 141 lasrfekaepsaeeler.alaelakeiaelGvfnlllsdgralfahastrLvyilRkaPfgea...elkdedlev 211
                 las+ ++ e +a ++++ a+a  +++ ++lG +n+ +s++++  a a++r+++i+ ++P+  a   +l++ d++ 
  CTQ28674.1 128 LASERPDCEVTAVDVMPdAVALALRNAEHLGIANVTISQSDWFSALAGQRFATIVSNPPYIDAadpHLAEGDVRF 202
                 555666566666666654788888899999******************************544223677766654 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00035       0.3      47     104 ..     110     166 ..      99     173 .. 0.86
   2 ?   -1.4   0.0       1.4   1.2e+03     130     150 ..     216     236 ..     186     261 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00035
                      -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE CS
  Ubie_methyltran  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflq 104
                       + ++lD+ +Gtg +a++l+++ +   +v+ +D+ ++ +  + + +++ g  n+   q
       CTQ28674.1 110 APCRILDLGTGTGAIALALASE-RPDCEVTAVDVMPDAVALALRNAEHLGIANVTISQ 166
                      4669**************9865.8999***************9999999999987655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.4
                      S-HHHHHHHHHHHEEEEEEEE CS
  Ubie_methyltran 130 tDklkaLkeayrvlkpGGrlv 150
                      +D  + ++e ++ l+pGG ++
       CTQ28674.1 216 ADLAHIIREGRQYLQPGGWML 236
                      566666666666666666543 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017      0.15      50      99 ..     113     161 ..      96     175 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
                     EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GG CS
  Methyltransf_3  50 rvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvae 99 
                     r+l++G+ tG  +La+a + P D +++a+d+ ++a+++al+  ++ g+a+
      CTQ28674.1 113 RILDLGTGTGAIALALASERP-DCEVTAVDVMPDAVALALRNAEHLGIAN 161
                     899***********9999987.89****************9999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2131.44
//
Query:       CTQ28675.1  [L=360]
Description: peptide chain release factor 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.7e-76  254.1   0.4    8.7e-76  254.1   0.4    1.6  2  PCRF          PCRF domain
    3.5e-40  136.6   0.3    3.5e-40  136.6   0.3    2.0  3  RF-1          RF-1 domain
     0.0049   17.0   0.6      0.012   15.7   0.6    1.7  1  HR1           Hr1 repeat
     0.0059   16.8   0.8     0.0059   16.8   0.8    2.8  2  ABC_tran_CTD  ABC transporter C-terminal domain


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.1   0.4     2e-79   8.7e-76       3     193 .]      14     203 ..      12     203 .. 0.99
   2 ?   -1.7   0.0      0.51   2.3e+03      21      58 ..     261     298 ..     254     340 .. 0.67

  Alignments for each domain:
  == domain 1  score: 254.1 bits;  conditional E-value: 2e-79
                 HHHTTTTTST.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT....-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTTSEE CS
        PCRF   3 eeleelekklsdpevwedqekakklskelaeleeivealeeleealedleeakelleedeelaelaeeeleelekeleeleeelkklLlpkdendekna 101
                 e++ee+++ l d ++++dq+k+++ls+e+a+l+++++ ++++++++ed+e+a+ +l +d+e++e+a+eel++++++ ++le++l+ lLlpkd++de+na
  CTQ28675.1  14 ERHEEVQALLGDAATIADQDKFRALSREYAQLSDVARCYTDWRQVQEDIETAQMML-DDPEMREMAQEELRDAKEKGDQLEQQLQVLLLPKDPDDERNA 111
                 89*****************************************************9.****************************************** PP

                 EEEEEE-SSTHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEESSS.SEEEEEEEEESTTHHHHHGGG-EEEEEEEE-TTSSS--EEEEEEEE CS
        PCRF 102 ileiraGaGGdeaalfaedLlrmYtryaerkgwkvevldaseeeagGikevtleiegegaYgkLkfEsGvHRvqRvpetesqgrihTStatV 193
                 ++e+raG+GGdeaalfa+dL+rmYtryae+++w+ve+l+a+e e+gG+kev+++i+g+g+Yg+LkfEsG HRvqRvp+tesqgrihTS++tV
  CTQ28675.1 112 FVEVRAGTGGDEAALFAGDLFRMYTRYAESRRWQVEILSANEGEHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTV 203
                 *******************************************************************************************9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.51
                 GGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT CS
        PCRF  21 qekakklskelaeleeivealeeleealedleeakell 58 
                 +++ k+ +k l+ l + ++a+e ++++++++++ ++ll
  CTQ28675.1 261 RSQHKNKAKALSVLGARIRAAEVAKRQQAEASTRRNLL 298
                 44445555555555555666665666655555555555 PP

>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3       1.9   8.5e+03      79      79 ..      79      79 ..      55      97 .. 0.44
   2 ?   -2.7   0.1       1.2   5.6e+03      17      38 ..     177     198 ..     176     205 .. 0.76
   3 !  136.6   0.3   7.7e-44   3.5e-40       6     116 .]     216     321 ..     211     321 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.9
                C CS
        RF-1 79 e 79
                +
  CTQ28675.1 79 Q 79
                1 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
                 E---SSSSSSGCSSSCEEEEEE CS
        RF-1  17 frssGaGGQnVNktesaVrlth 38 
                 f s+G+  Q V  tes+ r++ 
  CTQ28675.1 177 FESGGHRVQRVPATESQGRIHT 198
                 5688888899999999988854 PP

  == domain 3  score: 136.6 bits;  conditional E-value: 7.7e-44
                 E--GGGEEEEEE---SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-.S.-S---S.--ECEE CS
        RF-1   6 eidekdleidtfrssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkkekkkigtgs.sekiRt 103
                 +i+++dl+idtfrssGaGGQ+VN+t+sa+r+thlptg ivvecq+eRsq+kN++kAl++L a+++++e+++++++e+++r ++    +g+g+ s++ Rt
  CTQ28675.1 216 DINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTG-IVVECQDERSQHKNKAKALSVLGARIRAAEVAKRQQAEASTR-RN---LLGSGDrSDRNRT 309
                 79***********************************.8*************************9988888887777777.55...789********** PP

                 EECGCTTEEEETT CS
        RF-1 104 ynkkpqsrvkdhr 116
                 yn+ pq+rv+dhr
  CTQ28675.1 310 YNF-PQGRVTDHR 321
                 ***.********9 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.6   2.6e-06     0.012      29      63 ..      66     101 ..      43     107 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.6e-06
         HR1  29 k.ktqnkkvrqeaeselsesnskielLreqLeelqa 63 
                 + + ++ ++r+ a+ el++++ k ++L++qL+ l  
  CTQ28675.1  66 QmMLDDPEMREMAQEELRDAKEKGDQLEQQLQVLLL 101
                 5577899************************98765 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.8   1.3e-06    0.0059      14      64 ..       6      55 ..       3      60 .. 0.86
   2 ?    1.3   5.5     0.095   4.3e+02      19      60 ..      57      99 ..      53     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-06
  ABC_tran_CTD 14 eaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelyerW 64
                   a++eaL e+ +e++a l d++  +d++k+ +ls+e+++l  + ++ y  W
    CTQ28675.1  6 VAKLEALYERHEEVQALLGDAATIADQDKFRALSREYAQLS-DVARCYTDW 55
                  5899***********************************95.566666666 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.095
  ABC_tran_CTD 19 aLEeeiaeleaeladpelysdp.eklaelsaeleeleaeLeel 60
                  + +e+i++ +  l dpe+ +   e+l ++ ++ ++le++L+ l
    CTQ28675.1 57 QVQEDIETAQMMLDDPEMREMAqEELRDAKEKGDQLEQQLQVL 99
                  56899999*********98555699**************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2820.75
//
Query:       CTQ28676.1  [L=418]
Description: glutamyl tRNA reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-52  174.6   0.0    2.6e-51  173.2   0.0    1.8  1  GlutR_N          Glutamyl-tRNAGlu reductase, N-terminal domai
      2e-50  170.4   0.9    4.3e-50  169.4   0.9    1.6  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    1.5e-24   86.3   3.4    1.5e-24   86.3   3.4    2.1  2  GlutR_dimer      Glutamyl-tRNAGlu reductase, dimerisation dom
    1.3e-06   27.6   0.8    2.9e-06   26.4   0.8    1.5  1  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
    1.3e-05   25.7   0.9    8.4e-05   23.1   0.8    2.5  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    0.00058   20.1   1.6     0.0014   18.9   0.2    2.4  3  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0057   17.5   0.8      0.025   15.4   0.1    2.3  2  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
  ------ inclusion threshold ------
      0.025   14.2   0.0       0.15   11.7   0.0    2.4  1  UPF0181          Uncharacterised protein family (UPF0181)
       0.86    9.6   4.7       0.62   10.0   1.0    2.4  2  T2SSF            Type II secretion system (T2SS), protein F
        1.6    8.5  10.0       0.12   12.3   2.8    2.6  3  DUF3323          Protein of unknown function N-terminus (DUF3


Domain annotation for each model (and alignments):
>> GlutR_N  Glutamyl-tRNAGlu reductase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.2   0.0   1.4e-54   2.6e-51       1     146 []       6     156 ..       6     156 .. 0.98

  Alignments for each domain:
  == domain 1  score: 173.2 bits;  conditional E-value: 1.4e-54
     GlutR_N   1 iginhktapvelreklafseeelkellkel.ee.kvkeaviLsTCNRtEiylsaeeeeeaseellellaevs...leelkeklyvlegeeavrHlfrVa 94 
                 +ginhktapv+lre+++fs e+l+++l++l ++  v++ v+LsTCNRtE+yls+ee+++ +e+l+++l++++   +e+l+++ly +++++av+Hl+rVa
  CTQ28676.1   6 LGINHKTAPVALRERVTFSPETLDKALESLlAQpMVQGGVVLSTCNRTELYLSVEEQDNLQEALIRWLCNYHglnEEDLRKSLYWHQDNDAVSHLMRVA 104
                 69***************************99777999**********************************88889*********************** PP

     GlutR_N  95 sGLdSlvlGEdqIlgQvkeayelakeagtlgkvLerlfqkaikvakrvrtet 146
                 sGLdSlvlGE+qIlgQvk+a++ +++ +   ++Ler+fqk+++vakrvrtet
  CTQ28676.1 105 SGLDSLVLGEPQILGQVKKAFADSSRGHLNVSELERMFQKSFSVAKRVRTET 156
                 ***************************************************8 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.4   0.9   2.4e-53   4.3e-50       2     138 .]     172     306 ..     171     306 .. 0.98

  Alignments for each domain:
  == domain 1  score: 169.4 bits;  conditional E-value: 2.4e-53
                   HHHHHHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB-HHHHHCC CS
  Shikimate_DH   2 lakkkleslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisataseepilekeeveea 98 
                   la++++esl++ +vll+GaGe++elva+hL +++v+k+v+aNRt+era++laee+++e   +++l++++e+l+ead++is+tas+ pi+ k++ve+a
    CTQ28676.1 172 LARQIFESLSSVTVLLVGAGETIELVARHLREHHVRKMVIANRTRERAQALAEEVGAE---VIALSDIDERLKEADIIISSTASPLPIIGKGMVERA 265
                   89*****************************************************888...************************************ PP

                   HHH.S...EEEEE--SS-SB-TTGGGSTTCCCEEHHHHHHH CS
  Shikimate_DH  99 lkkrk.kplllvDiavPRdvepevaeledvrlytvDdLkev 138
                   lk+r+ +p+llvDiavPRdvepev++l +++ly+vDdL+++
    CTQ28676.1 266 LKARRnQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQNI 306
                   ****99********************************986 PP

>> GlutR_dimer  Glutamyl-tRNAGlu reductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       4.8   8.6e+03      29      36 ..     215     222 ..     192     243 .. 0.53
   2 !   86.3   3.4   8.1e-28   1.5e-24       1      96 [.     320     416 ..     320     417 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.8
                  HHHHHHHH CS
  GlutR_dimer  29 lrekaeei 36 
                   re+a+++
   CTQ28676.1 215 TRERAQAL 222
                  23333333 PP

  == domain 2  score: 86.3 bits;  conditional E-value: 8.1e-28
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-S..-------.-TTHHHHHHHHHHHHHHHHHHSS.-TTTTHHHHHHHHH.. CS
  GlutR_dimer   1 kAeaiIeeeveefeawlkslevvptIkalrekaeeireeeleralkklaldgedree.lekltrslvnkllheptarLkea.edeeeellealrrlFn 96 
                  +Ae+i+e+e++ef+awl+++++++tI+++r++ e++ree  ++al+ l+ +g d++e +++l+r+l+n+l+h+pt++L++a +d ++e l++lr+ ++
   CTQ28676.1 320 QAESIVEQETSEFMAWLRAQSASETIREYRSQSEQVREELTAKALAALE-QGGDAQEiMQDLARKLTNRLIHAPTKSLQQAaRDGDDERLHILRNSLG 416
                  7************************************************.99999999***********************54445599999998765 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.8   1.6e-09   2.9e-06     117     214 ..     170     263 ..     156     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.6e-09
                      HHHHHHHHS-TT--EEEEE--SHHHHHHHHHHCCCS--SEEEEE-SSHHHHHHHHHHCCS.CTT-EEECSCHHHHTTSSEEEE----SS-SB-G CS
  OCD_Mu_crystall 117 savaakyLarkdasvlaiiGaGvqaetqlealkavldikevriydrdeeaaekfaenlqefefevsackseeeavegadivvtvTaakapilka 210
                        +a +   + ++ ++ ++GaG   e+ ++ l++   ++++ i +r++e a+++ae++ +   ev a ++  e  ++adi++  Ta+  pi+ +
       CTQ28676.1 170 CTLARQIFESLSSVTVLLVGAGETIELVARHLRE-HHVRKMVIANRTRERAQALAEEVGA---EVIALSDIDERLKEADIIISSTASPLPIIGK 259
                      45555555666888999*******9999999876.5799999***********9999985...******************************* PP

                      GGS- CS
  OCD_Mu_crystall 211 ewvk 214
                       +v+
       CTQ28676.1 260 GMVE 263
                      9998 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         4   7.2e+03      68      96 ..      22      51 ..      21      52 .. 0.76
   2 !   23.1   0.8   4.7e-08   8.4e-05       4      68 ..     187     249 ..     184     282 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4
                   -S-HHHHHHHHHHC.GHHHHTTSEEEEESS CS
  F420_oxidored 68 avkpedveevlsel.akdalkgklvisvla 96
                   ++ pe ++++l++l a+   +g +v+s+++
     CTQ28676.1 22 TFSPETLDKALESLlAQPMVQGGVVLSTCN 51
                   567888888888886777788999999887 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 4.7e-08
                    EETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECE.CHHHHHHH-SEEEE- CS
  F420_oxidored   4 iiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtav.dneeaaeeadvvvla 68 
                    ++GaG+ +e +a+ l ++    +++v+a +r+ e+a++laee+g++v+a  d  e ++ead+++ +
     CTQ28676.1 187 LVGAGETIELVARHLREHH--VRKMVIA-NRTRERAQALAEEVGAEVIALsDIDERLKEADIIISS 249
                    67****************8..9999988.***************98888515678999****9954 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.5   4.4e+03      45      75 ..      19      48 ..       9      53 .. 0.70
   2 !   18.9   0.2   7.8e-07    0.0014       1      61 [.     185     238 ..     185     283 .. 0.82
   3 ?   -3.3   0.0       5.7     1e+04      38      66 ..     339     367 ..     335     373 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.5
                     TTTCEEEEE--TTTHHHHHHHHHTTSSEEEE CS
  Sacchrp_dh_NADP 45 lgvrfeaialdaenyeavLaallkegdlvvn 75
                      +v+f++++ld++ ++  La+ + +g++v++
       CTQ28676.1 19 ERVTFSPETLDKALESL-LAQPMVQGGVVLS 48
                     56788888888887777.6666666677765 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 7.8e-07
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyea 61 
                      vl++GaG + + va+ l +h+    ++++a r++e+++ala++     + a+ +  +++++
       CTQ28676.1 185 VLLVGAGETIELVARHLREHHVR--KMVIANRTRERAQALAEE-----VGAEVIALSDIDE 238
                      799**************999976..9**********9999964.....4555555555555 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5.7
                      HHHHCHHTTTCEEEEE--TTTHHHHHHHH CS
  Sacchrp_dh_NADP  38 ealaakalgvrfeaialdaenyeavLaal 66 
                      + + +++++ r +++++  e  ++ Laal
       CTQ28676.1 339 QSASETIREYRSQSEQVREELTAKALAAL 367
                      45555566666666666666666656555 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.4e-05     0.025       2      85 ..     184     268 ..     183     275 .. 0.81
   2 ?   -0.5   0.1       1.2   2.1e+03      32      55 ..     345     368 ..     306     401 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
                   EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE..EESSHHHHHTCTTESEEEE-S-GGG...HHHHHHHHHHT CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve..aysdleelladpeidavivatpngt...heelakaalea 85 
                    v+++GaG   +  +r l+e+ +  ++v + ++  era+a+ae+ g+e  a sd++e l+  e+d++i  t + +   ++ ++++al+a
    CTQ28676.1 184 TVLLVGAGETIELVARHLREH-HVRKMV-IANRTRERAQALAEEVGAEviALSDIDERLK--EADIIISSTASPLpiiGKGMVERALKA 268
                   5899******99999999999.666666.99*****************9999*******9..666666555553334488888888876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.2
                   ECSSHHHHHHHHHHTTHEEESSHH CS
  GFO_IDH_MocA  32 ldpdaeraeavaesfgveaysdle 55 
                   + +  +++e+v+e++ ++a + le
    CTQ28676.1 345 IREYRSQSEQVREELTAKALAALE 368
                   456667788888888888766644 PP

>> UPF0181  Uncharacterised protein family (UPF0181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.5e-05      0.15      29      48 ..     189     208 ..     187     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.5e-05
     UPF0181  29 ssgeAIalVAqelReehqak 48 
                  +ge I+lVA++lRe+h +k
  CTQ28676.1 189 GAGETIELVARHLREHHVRK 208
                 68**************9765 PP

>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.44   7.8e+02      35      80 ..     149     197 ..     137     224 .. 0.60
   2 ?   10.0   1.0   0.00034      0.62      47      94 ..     340     390 ..     313     399 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.44
                 HHHHHHHHHTTS.SHHHHHC.....T-TT.TS-HHHHHHHHHHHHHT-HHHH CS
       T2SSF  35 lkriarrlraGg.slseale.....rtpssefpelvvqlirageeggnLaev 80 
                  kr++++ + G  ++s a++     r     f +l +  + ++ +g +++ v
  CTQ28676.1 149 AKRVRTETDIGAsAVSVAFAactlaR---QIFESLSSVTVLLVGAGETIELV 197
                 57777888888755577777664433...23344444444444444444444 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00034
                 SHHHHHC..T-TT.TS.-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHH CS
       T2SSF  47 slseale..rtpssef.pelvvqlirageeggnLaevLerlaeyleeerel 94 
                 s se ++  r++s++   el +  ++a e+gg+  e++++la+ l +++ +
  CTQ28676.1 340 SASETIReyRSQSEQVrEELTAKALAALEQGGDAQEIMQDLARKLTNRLIH 390
                 4567777777777899999************************99888765 PP

>> DUF3323  Protein of unknown function N-terminus (DUF3323)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.71   1.3e+03      48      66 ..      23      41 ..      14     118 .. 0.56
   2 ?   -1.4   0.1         1   1.8e+03      33      50 ..     230     247 ..     193     272 .. 0.60
   3 ?   12.3   2.8   6.5e-05      0.12      73     149 ..     310     385 ..     289     387 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.71
     DUF3323 48 farsdleevlealfgepll 66
                f++ +l ++le l+ +p++
  CTQ28676.1 23 FSPETLDKALESLLAQPMV 41
                5666666666666665543 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
     DUF3323  33 rvsladldaalrksrfar 50 
                  + l+d+d++l+++ +  
  CTQ28676.1 230 VIALSDIDERLKEADIII 247
                 355666666666655554 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 6.5e-05
     DUF3323  73 aaeaeawaavfaaleaeaaarpelreWldklrgygllrrlykkdeeaarellrqalrvlaaLpadgvrlpvlAarvt 149
                 + ++++ aav a+    +++ +e+ +Wl++ ++++++r+  +++e+  +el ++al++l++    ++ +  lA ++t
  CTQ28676.1 310 NLAQRKAAAVQAESI-VEQETSEFMAWLRAQSASETIREYRSQSEQVREELTAKALAALEQGGDAQEIMQDLARKLT 385
                 344555555555555.778889***************9999999887779999999999987666677777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1476  (0.0823247); expected 358.6 (0.02)
Passed bias filter:                      795  (0.0443416); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.37
# Mc/sec: 3407.57
//
Query:       CTQ28677.1  [L=203]
Description: chaperone for lipoproteins [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-47  161.8   0.8    1.4e-47  161.5   0.8    1.1  1  LolB      Outer membrane lipoprotein LolB
    0.00049   19.8   0.0       0.48   10.1   0.0    2.1  2  DUF4292   Domain of unknown function (DUF4292)
     0.0045   16.8   0.4     0.0059   16.5   0.4    1.2  1  DUF3261   Protein of unknown function (DUF3261)


Domain annotation for each model (and alignments):
>> LolB  Outer membrane lipoprotein LolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   0.8   2.4e-51   1.4e-47       1     153 []      46     200 ..      46     200 .. 0.97

  Alignments for each domain:
  == domain 1  score: 161.5 bits;  conditional E-value: 2.4e-51
        LolB   1 eqwqlsGrlavkspeqsvsanfdwqqqgdr.yeleLtspLGqtvlelevdpegatledsdgqaytaadaeeLleellgwelPvsgLrqWvlglpapaae 98 
                 +q+q++G +a+ s+eq+v+a+f+wqq+g++ y+l Lt+pLG+t+l l+++p++++l+d++gq+yta+daee++ +l+g+++P+++LrqW+ glp  +a+
  CTQ28677.1  46 NQFQTRGAFAYLSDEQKVYARFFWQQTGQDrYRLLLTNPLGSTELSLTAQPGSVQLIDNKGQTYTATDAEEMIGRLTGMPIPLNSLRQWIIGLPG-DAT 143
                 58***********************999999****************************************************************.9** PP

        LolB  99 eleldeqgrlekleq....dgwevrYqnyqdvegvplPkrlelereelqqrikLvideW 153
                 +++ld+  rl++l++    + w+v+Y  y+++++++lP+++el+++ +  rikL++d+W
  CTQ28677.1 144 DYSLDDRYRLRELNYtqngKTWHVTYGGYTSDTQPALPSNVELNNGAQ--RIKLKMDNW 200
                 ***************99**************************66666..********* PP

>> DUF4292  Domain of unknown function (DUF4292)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   8.1e-05      0.48      35     110 ..      75     148 ..      43     162 .. 0.73
   2 !    9.5   0.0   0.00012      0.73     136     177 ..     151     190 ..     140     201 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8.1e-05
     DUF4292  35 eaiwlsaapflGievaralitpdsvlvydklnkryfvgdfsnLs.kllgvelsfellqnlllGqlleplraekskvk 110
                 ++ +l +++ lG +   +   p sv+++d+  ++y   d +++  +l+g+++  ++l   ++G    p+ a++++++
  CTQ28677.1  75 DRYRLLLTNPLGSTELSLTAQPGSVQLIDNKGQTYTATDAEEMIgRLTGMPIPLNSLRQWIIGL---PGDATDYSLD 148
                 555555555667777788899*****************7766555******************9...7777777444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00012
     DUF4292 136 rrleslevndpsgrrklevtYsnFksvdsvllPaeielqaee 177
                 +rl +l+++++ +  +++vtY  ++s  +  lP+++el+   
  CTQ28677.1 151 YRLRELNYTQNGK--TWHVTYGGYTSDTQPALPSNVELNNGA 190
                 5777766666666..*********************997544 PP

>> DUF3261  Protein of unknown function (DUF3261)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.4   9.9e-07    0.0059      22     133 ..      71     196 ..      37     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.9e-07
     DUF3261  22 eldpeqlrlaglsplGqrlftlsydgqelev.ers.rrlPdqlkaeqvladlqlalWPlaalqaalp.....esgwsleeederdgq...Rtly.rnge 109
                 +  +++ rl++++plG + ++l+ + ++++  +++ ++   + +ae ++  l+ +  Pl++l++ +        ++sl++          R+l   ++ 
  CTQ28677.1  71 QTGQDRYRLLLTNPLGSTELSLTAQPGSVQLiDNKgQTY-TATDAEEMIGRLTGMPIPLNSLRQWIIglpgdATDYSLDD------RyrlRELNyTQNG 162
                 456779*************************85553333.3457*********************996666644666666......3335988777778 PP

     DUF3261 110 lileIey..........ldgrivleneaagYrLt 133
                 ++++++y          l+++++l+n a+  +L+
  CTQ28677.1 163 KTWHVTYggytsdtqpaLPSNVELNNGAQRIKLK 196
                 88889*9999*******9*********9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1696.46
//
Query:       CTQ28678.1  [L=283]
Description: 4-diphosphocytidyl-2-C-methylerythritol kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-11   43.6   0.3      5e-11   42.7   0.3    1.5  1  GHMP_kinases_N  GHMP kinases N terminal domain
    4.2e-06   27.0   0.0    7.6e-06   26.2   0.0    1.4  1  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.3   5.6e-15     5e-11       1      65 [.      91     148 ..      91     149 .. 0.93

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 5.6e-15
                     EEEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHS CS
  GHMP_kinases_N   1 divikseiPvgaGLGSSAAlavalvaAllallglsleeaklaleaerlaqggngsggDvaasvyG 65 
                     di+i++++P+g GLG++++ a+++++Al++l+g        +l   +la +g   g Dv+++v G
      CTQ28678.1  91 DISIDKRLPMGGGLGGGSSNAATVLVALNHLWG-------CGLSEDELATLGLQLGADVPVFVRG 148
                     799*****************************7.......666777999*************988 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   8.4e-10   7.6e-06      14      77 ..     203     259 ..     189     266 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 8.4e-10
  GHMP_kinases_C  14 gellnlsqrselkavvgilppeleellealselGalgaklsGaGgGptvfalfkdkdeaeqvar 77 
                      ++ +++   el   +++ ++e++++l++l+e+    ++l+G+  G++vfa f ++++a qv++
      CTQ28678.1 203 LNCEFSNDC-EL--IARKRFREVDAALSWLLEYA--PSRLTGT--GACVFAEFNTESAARQVLD 259
                     444443333.55..899999**********9999..*******..****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2071.70
//
Query:       CTQ28679.1  [L=337]
Description: ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-50  168.8   0.1    2.3e-49  166.2   0.0    2.2  2  Pribosyltran_N  N-terminal domain of ribose phosphate pyropho
    5.3e-31  108.1   0.7    9.6e-31  107.2   0.7    1.5  1  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
    8.8e-19   67.6   2.1    1.1e-18   67.2   0.4    1.9  3  Pribosyltran    Phosphoribosyl transferase domain
     0.0045   16.5   0.0     0.0072   15.8   0.0    1.3  1  UPRTase         Uracil phosphoribosyltransferase
  ------ inclusion threshold ------
       0.13   11.7   0.0       0.24   10.9   0.0    1.4  1  PRTase_2        Phosphoribosyl transferase


Domain annotation for each model (and alignments):
>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.2   0.0   6.4e-53   2.3e-49       1     116 []      26     143 ..      26     143 .. 0.98
   2 ?   -0.0   0.0      0.23   8.1e+02      43      83 ..     231     267 ..     199     278 .. 0.71

  Alignments for each domain:
  == domain 1  score: 166.2 bits;  conditional E-value: 6.4e-53
  Pribosyltran_N   1 lkifagssskeLaekiakrlgvelgkakvsrfadgEikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakritaViPylgysrqd 95 
                     +k+fag++++eLa++ia+rl ++lg+a v+rf+dgE++v+i+e+vrg d+fiiqs+++p+ndnlmel++m+dalrrasa ritaViPy+gy+rqd
      CTQ28679.1  26 MKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQD 120
                     89********************************************************************************************* PP

  Pribosyltran_N  96 rk.ks.repisaklvaklLeaaG 116
                     r+ +s r+pi+ak+va+ L+++G
      CTQ28679.1 121 RRvRSaRVPITAKVVADFLSSVG 143
                     *99777**************998 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.23
  Pribosyltran_N  43 esvrgkdvfiiqslskpvndnlmelllmidalrrasakrit 83 
                      +v g+d++++ ++ +        l+  ++al++  akr+ 
      CTQ28679.1 231 GDVAGRDCVMVDDMIDT----GGTLCKAAEALKERGAKRVF 267
                     46667777766666533....34567777888888888876 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.7   2.7e-34   9.6e-31      74     183 ..     226     335 ..     185     336 .. 0.95

  Alignments for each domain:
  == domain 1  score: 107.2 bits;  conditional E-value: 2.7e-34
                     ---EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEEEEE---TTHHHHHHHSS--EEEEESSS--HHHHHT-TTEEEE--HHHHHH CS
  Pribosyl_synth  74 pltvvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvlathGllssdaprlleesaidevvvtntipheiqklrcskiktvdislllae 168
                      + ++Gdv+Gr  ++vdd+id   ++ +aae lkerGa ++++ ath ++s +a +++++s ide vv +tip   +    +k++t+ +s +lae
      CTQ28679.1 226 VMHIIGDVAGRDCVMVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAIQNIKNSVIDEFVVCDTIPLAPEIKALDKVRTLTLSGMLAE 320
                     5899**********************************************************************999999*************** PP

                     HHHHHHHT---TT-S CS
  Pribosyl_synth 169 airrihngesmsylf 183
                     airri n+es+s +f
      CTQ28679.1 321 AIRRISNEESISAMF 335
                     ************998 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.63   2.2e+03      43      74 ..      37      68 ..      36      78 .. 0.79
   2 ?   -3.1   0.0       1.4     5e+03     106     128 ..      95     120 ..      92     137 .. 0.67
   3 !   67.2   0.4   3.1e-22   1.1e-18      27     119 ..     182     267 ..     173     293 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.63
                  HHHHHHHHSTT-EE-EEEEEE-TTT--EE... CS
  Pribosyltran 43 fakiladeLevplayvrkvkyrpdgseeaarg 74
                  +a+++a++L   l +  + +++++  +++++ 
    CTQ28679.1 37 LAQRIANRLYTSLGDAAVGRFSDGEVSVQINE 68
                  68999999999999999988888888887654 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.4
                   HHHHHHCC-BSEEEEEEEE...E-HH CS
  Pribosyltran 106 alelLkekgpeevriavlv...dkpa 128
                   ++++L+++ + ++ ++ ++   ++ +
    CTQ28679.1  95 MVDALRRASAGRITAVIPYfgyARQD 120
                   67888888888888888876643333 PP

  == domain 3  score: 67.2 bits;  conditional E-value: 3.1e-22
                   -GGGEEEEEEETTTHHHHHHHHHHS.TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEE CS
  Pribosyltran  27 ngkpdvvvgiargGvpfakiladeL.evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpeevr 119
                   n  +++vv ++ gGv++a ++a+ L +  +a+++k++ r+++s++++          +d+ag+ +++VDD++dtGgTl++a+e+Lke+g+++v 
    CTQ28679.1 182 NLDNPIVVSPDIGGVVRARAIAKLLnDTDMAIIDKRRPRANVSQVMH--------IIGDVAGRDCVMVDDMIDTGGTLCKAAEALKERGAKRVF 267
                   6679*********************8888999999999999999998........79**********************************985 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     2e-06    0.0072     110     151 ..     224     265 ..     194     294 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2e-06
     UPRTase 110 eyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvge 151
                   + ++  ++a r  +++D +i TGg++++a + Lkerg++ 
  CTQ28679.1 224 SQVMHIIGDVAGRDCVMVDDMIDTGGTLCKAAEALKERGAKR 265
                 344445577888999**********************99863 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.7e-05      0.24     122     152 ..     236     266 ..     227     285 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.7e-05
    PRTase_2 122 kelvLvDDEistGktalnliralqeklprkr 152
                 +  v+vDD i tG t+++ ++al+e+  ++ 
  CTQ28679.1 236 RDCVMVDDMIDTGGTLCKAAEALKERGAKRV 266
                 678********************99876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2620.71
//
Query:       CTQ28680.1  [L=550]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-76  257.9  26.1    1.3e-76  257.9  26.1    1.4  2  Sulfate_transp  Sulfate permease family
    2.5e-11   43.2   0.0    3.9e-11   42.6   0.0    1.3  1  STAS            STAS domain


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.9  26.1   1.4e-80   1.3e-76       1     378 [.      20     402 ..      20     405 .. 0.89
   2 ?   -3.6   0.2      0.41   3.6e+03     169     194 ..     421     447 ..     410     461 .. 0.57

  Alignments for each domain:
  == domain 1  score: 257.9 bits;  conditional E-value: 1.4e-80
  Sulfate_transp   1 lkgDliaGitvallaiPqalayallaglppiygLyssvvpqlvyalfGtsrqlavGpvavlslivgeiiakvaeeepekgieiattltllaGviq 95 
                     ++ DliaGitv+++aiP+a+a+a+ +g+pp+ygLy+s v+++v+al G+sr +++Gp+a++ +i+  + ++        g++ ++++tl++G+++
      CTQ28680.1  20 FTRDLIAGITVGIIAIPLAMALAIGSGVPPQYGLYTSAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQF-------GLAGLLVATLMSGIFL 107
                     789*****************************************************************9999.......**************** PP

  Sulfate_transp  96 vllGllRLgflveflseavlsGfiaGaaivillsqikvllglervskkeslvsvlsslftnlekvnlakvvlgllllvvLlvtkellkklkkllv 190
                     +l+Gl R+g+l+e+++ +v  Gf++G++i+i + qik +lgl+    +e   + + +l   l+++n+ ++++g+++l +L+++ +l  +l     
      CTQ28680.1 108 ILFGLARFGRLIEYIPLSVTLGFTSGIGITIGTMQIKDFLGLQMPHVPEHYLQKVAALAMALPTINVGDAAIGVVTLGILILWPRLGIRLPGH-- 200
                     *******************************************888999999*********************************76655544.. PP

  Sulfate_transp 191 ipapaelvavivatlvsaif........elkreagvki.....vgeipsglpelslp........kvdwsllsallpdalaialvglleaiavsk 264
                           l a++ +  v++++           ++++ +       + ip+ lp+l lp         ++w  l+allp+a+++a++g +e+++ + 
      CTQ28680.1 201 ------LPALLGGCAVMLVVnllggdvaTIGSQFHYQLadgtqGNGIPQLLPQLVLPwdmpgsnfTLSWASLQALLPAAFSMAMLGAIESLLCAV 289
                     ......4444444444444422222111222333333222222467999999999999999**999***************************** PP

  Sulfate_transp 265 sldkkkgykvdsnkELvAlGfsNilsslfgglpatgafsrsavnikaGaktqlsglvsalvvllvllvltplleyiPkavLaaiiivagkglLve 359
                     +ld ++g+k+++n EL+++G+ Ni++++fgg++at+a++rsa n++aGa ++++ +++al+v+l+ll+l+pll+ +P +++aa++++++++ + e
      CTQ28680.1 290 VLDGMTGTKHKANSELIGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPVAAVIHALLVILALLILAPLLSWLPLSAMAALLLMVAWN-MSE 383
                     *******************************************************************************************.9** PP

  Sulfate_transp 360 lkelkklwklskldflill 378
                      +++++l +  + d ++++
      CTQ28680.1 384 AHKVINLLRHAPKDDIVVM 402
                     ********96666555444 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.41
  Sulfate_transp 169 llllvvLlvtkellkklkkl..lvipap 194
                     +++l+ Ll+++++ +++ +l  +++ +p
      CTQ28680.1 421 GIVLASLLFMRRI-ARMTHLapVNVEVP 447
                     3556666666664.34444445444444 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   4.3e-15   3.9e-11       2     115 ..     442     544 ..     441     546 .. 0.94

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 4.3e-15
                 EEEEECTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHHHTT CS
        STAS   2 idaeeiegililrldgpidfanaesfkeklkravgeepervekkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevreklektg 100
                 +++e+++++l+lr+ gp++fa ae++  +l+  ++ +          + ++l ++av+++D  G+ a+++++++l   g+e+ ++n+  +  ++l ++g
  CTQ28680.1 442 VNVEVPDDVLVLRVIGPLFFAAAEGLFNDLETRIAGK----------RIVVLKWDAVPVLDAGGLDAFQRFVNKLP-EGCELRVSNLEFQPLRTLARAG 529
                 5899********************************9..........8****************************.********************** PP

                 CGGCC..SEEESSHH CS
        STAS 101 ffdeveeeklfltvh 115
                 +    ++  ++++ +
  CTQ28680.1 530 VKPLPGRLSFYPDRQ 544
                 *99888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4085.38
//
Query:       CTQ28681.1  [L=348]
Description: putative albicidin resistance protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-19   68.4   0.2    1.5e-18   66.6   0.1    2.0  2  MerR_1          MerR HTH family regulatory protein
    1.4e-14   54.6   4.2    9.6e-08   32.6   0.3    2.5  2  TipAS           TipAS antibiotic-recognition domain
    1.7e-14   53.3   0.5    8.7e-14   51.0   0.3    2.3  2  MerR            MerR family regulatory protein
    3.1e-05   24.4   4.2    3.1e-05   24.4   4.2    3.8  4  MerR-DNA-bind   MerR, DNA binding
     0.0015   18.9   3.9        0.3   11.5   0.1    3.5  3  HTH_31          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.013   15.5   0.1        3.2    7.9   0.1    2.6  2  Myb_DNA-bind_5  Myb/SANT-like DNA-binding domain
      0.091   12.3   0.0       0.24   11.0   0.0    1.8  1  WHIM1           WSTF, HB1, Itc1p, MBD9 motif 1
       0.11   12.3   2.5       0.46   10.4   0.1    3.0  3  HTH_23          Homeodomain-like domain


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.1   6.9e-22   1.5e-18       3      68 ..       5      71 ..       3      72 .. 0.96
   2 ?   -2.2   0.0       2.1   4.7e+03       6      19 ..     211     224 ..     210     229 .. 0.81

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 6.9e-22
                HHHHHHHHTS-HHHHHHHHHHTT-S-EE.-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XXXX CS
      MerR_1  3 igevakilgvtthtlrywekegllkpkr.teggrryYtdedierLklikyLlkrGltlkgikkllns 68
                +ge+ak++g+t++tl+++e+ gll p+  +e g+r+Y+ + ++rL++ik+L ++Gltl+ ik++l+ 
  CTQ28681.1  5 VGELAKRAGLTVRTLHHYEQTGLLTPSArSEAGYRLYNLSAVQRLHMIKALAQAGLTLATIKDYLDR 71
                79*********************999999***********************************985 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.1
                 HHHHHTS-HHHHHH CS
      MerR_1   6 vakilgvtthtlry 19 
                  ++++gvt+  + y
  CTQ28681.1 211 MVEQTGVTPAIIAY 224
                 57899***999876 PP

>> TipAS  TipAS antibiotic-recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.3   4.3e-11   9.6e-08      29     114 ..     147     229 ..     126     231 .. 0.85
   2 !   23.0   0.3   3.9e-08   8.7e-05      23      75 ..     246     298 ..     235     324 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 4.3e-11
                 XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TipAS  29 dweelkaelkelfaklaaalaagkdpdseeaqelaeehralieefwgecskeilaglgqmYvadprftenydkkgeglaeflrdAi 114
                 d  + ++ + el+++++ ++a+g + ds++a++la ++++ +e+ +    +e l  l +m++a+p++ e+     +   +++ +A+
  CTQ28681.1 147 DE-QRAQAWRELTEEVQTLMASGCPTDSPQAMRLATRWMERLEQDTA-GRPEFLTRLNEMHAAEPQMVEQTGV-TPAIIAYITEAF 229
                 43.44567***********************************8666.******************9999884.499999999987 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 3.9e-08
                 XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TipAS  23 aklskedweelkaelkelfaklaaalaagkdpdseeaqelaeehralieefwg 75 
                   ++ +++ +  +e+ +l akl +a+++g++pds+  q+la+ + +l + + g
  CTQ28681.1 246 MAFTRQHYFDRLQEWPALVAKLHQACREGVAPDSASGQALARAWLELFQSYAG 298
                 5677888888889**********************************997655 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.3   3.9e-17   8.7e-14       2      38 .]       5      41 ..       4      41 .. 0.98
   2 ?   -1.3   0.0      0.85   1.9e+03       6      14 ..     212     220 ..     210     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 3.9e-17
                HHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  2 IgevAeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                +ge+A+++G+++rtL++YE+ GL+ p+ R+e+GyRlY
  CTQ28681.1  5 VGELAKRAGLTVRTLHHYEQTGLLTPSARSEAGYRLY 41
                69**********************************9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.85
                 HHHHTTTHH CS
        MerR   6 AeltGvspr 14 
                  e tGv+p 
  CTQ28681.1 212 VEQTGVTPA 220
                 589****97 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   4.2   1.4e-08   3.1e-05       1      63 [.      46     102 ..      46     104 .. 0.88
   2 ?    0.9   0.3      0.31     7e+02      21      43 ..     139     160 ..     133     162 .. 0.70
   3 ?    3.4   0.1     0.051   1.1e+02      18      51 ..     159     190 ..     157     203 .. 0.79
   4 ?   -3.4   0.0       6.7   1.5e+04      32      46 ..     277     291 ..     271     295 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.4e-08
                    HHHHHHHHHHHHTT--HHHHHHHHHHHHSTTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind   1 leRLkfIrrarrlGFsLdeIrelLalyddrappcqdvrallarklaeleeriaeLqalraeLa 63 
                    ++RL++I+ + ++G++L+ I++ L     ++++  +  +ll ++++ l++++++  +lr++L 
     CTQ28681.1  46 VQRLHMIKALAQAGLTLATIKDYL-----DRQTLSLP-ELLTQQIDMLNAQLRDVGRLRDRLL 102
                    79**********************.....33444444.6**********************95 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.31
                    HHHHHHHHSTTTBHHHHHHHHHH CS
  MerR-DNA-bind  21 relLalyddrappcqdvrallar 43 
                    ++l  + +++++++q++r+l+++
     CTQ28681.1 139 AAL-PFAAQDEQRAQAWRELTEE 160
                    443.3677789999999999875 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.051
                    HHHHHHHHHHHS.TTTBHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind  18 deIrelLalydd.rappcqdvrallarklaeleer 51 
                    +e+++l+    + ++++ q++r l+ r++++le+ 
     CTQ28681.1 159 EEVQTLM--ASGcPTDSPQAMR-LATRWMERLEQD 190
                    5777777..3366777777777.**********96 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 6.7
                    TBHHHHHHHHHHHHH CS
  MerR-DNA-bind  32 ppcqdvrallarkla 46 
                    p+++  +al++++l+
     CTQ28681.1 277 PDSASGQALARAWLE 291
                    566666788888886 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   0.00013       0.3      19      63 ..       7      50 ..       4      61 .. 0.78
   2 ?   -2.3   0.1       2.7     6e+03       8      21 ..     103     139 ..      96     141 .. 0.43
   3 !    6.8   0.0    0.0037       8.4      23      62 ..     176     213 ..     171     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
      HTH_31 19 evAerlgvsestlsrlEqGrrgrpspavlealaralgldpaerae 63
                e+A+r+g+++ tl+++Eq    + + a  ea  r+++l+  +r +
  CTQ28681.1  7 ELAKRAGLTVRTLHHYEQTGL-LTPSARSEAGYRLYNLSAVQRLH 50
                89****************666.45566666666777666666655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.7
      HTH_31   8 alRera.......................GLsqeevA 21 
                  lRe+                          sq+e+A
  CTQ28681.1 103 VLREALasgnepdleswlqtlelmkmydrWFSQQELA 139
                 5555544444444443333333333333224556655 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0037
      HTH_31  23 rlgvsestlsrlEqGrrgrpspavlealaralgldpaera 62 
                 + ++   ++ rlEq + g  +p++l++l + + ++p  ++
  CTQ28681.1 176 AMRLATRWMERLEQDTAG--RPEFLTRLNEMHAAEPQMVE 213
                 5667778**********9..67*****9999998887665 PP

>> Myb_DNA-bind_5  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0014       3.2      31      51 ..     144     164 ..     132     183 .. 0.86
   2 ?    4.8   0.0     0.014        31      26      66 ..     274     312 ..     262     321 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0014
  Myb_DNA-bind_5  31 aatnkaKsraWeeiaervnal 51 
                     aa+ +++++aW+e++e+v++l
      CTQ28681.1 144 AAQDEQRAQAWRELTEEVQTL 164
                     677899************983 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.014
  Myb_DNA-bind_5  26 gkksdaatnkaKsraWeeiaervnalgsveRtaeelkkkwe 66 
                     g + d+a+ +a +raW e+ +++   g++++t+++ ++ +e
      CTQ28681.1 274 GVAPDSASGQALARAWLELFQSY--AGTRPQTLQKFRRAME 312
                     556789999*************9..7888999999998776 PP

>> WHIM1  WSTF, HB1, Itc1p, MBD9 motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.24      16      46 .]      40      70 ..      24      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
                CCCS-HHHHHHHHHHHHHHHCCC-CCHHHHH CS
       WHIM1 16 YyeLspeeklkiLkiLcdlllsssavReeie 46
                 y+Ls +++l + k+L    l+ + ++++++
  CTQ28681.1 40 LYNLSAVQRLHMIKALAQAGLTLATIKDYLD 70
                599**************************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.41   9.3e+02      22      38 ..       7      23 ..       3      27 .. 0.78
   2 ?   10.4   0.1    0.0002      0.46       2      28 ..      43      70 ..      42      72 .. 0.89
   3 ?   -2.3   0.1         2   4.5e+03       4      16 ..      97     109 ..      96     113 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.41
      HTH_23 22 eIAreLgvsrrTvyrwl 38
                e A++ g + rT+ ++ 
  CTQ28681.1  7 ELAKRAGLTVRTLHHYE 23
                67899999999998765 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0002
      HTH_23  2 asereRlrillllae.GlsvreIAreLg 28
                +s+++Rl+++++la+ Gl+ ++I + L+
  CTQ28681.1 43 LSAVQRLHMIKALAQaGLTLATIKDYLD 70
                5899*****************9988776 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2
      HTH_23   4 ereRlrillllae 16 
                  r+Rl++l+ ++ 
  CTQ28681.1  97 LRDRLLVLREALA 109
                 6899999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2606.14
//
Query:       CTQ28682.1  [L=91]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-47  159.9   0.8    1.8e-47  159.7   0.8    1.0  1  DUF2583    Protein of unknown function (DUF2583)
  ------ inclusion threshold ------
      0.018   14.7   1.7      0.022   14.4   1.7    1.0  1  CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
       0.11   12.3   0.9       0.14   12.0   0.9    1.3  1  DUF5134    Domain of unknown function (DUF5134)
       0.22   12.3   3.1       0.28   11.9   3.1    1.1  1  DUF4282    Domain of unknown function (DUF4282)


Domain annotation for each model (and alignments):
>> DUF2583  Protein of unknown function (DUF2583)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.7   0.8   3.9e-51   1.8e-47       1      88 []       1      88 [.       1      88 [. 0.99

  Alignments for each domain:
  == domain 1  score: 159.7 bits;  conditional E-value: 3.9e-51
     DUF2583  1 mkrkkalllGnvlmglGlllmvaslaysvlnqlpelelpellaeaallgifiGallWlaGarvgGrekvadrywWlrhydkryrrkkh 88
                mkrk+a+llGnvlmglGl++mv++++ys+lnqlp+l+lp+++a++a+l+if+Ga+lWlaGar+gG+e+v+drywW+rhydkr+rr++h
  CTQ28682.1  1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQLNLPQFFAHGAILSIFVGAVLWLAGARIGGHEQVSDRYWWVRHYDKRCRRNQH 88
                9************************************************************************************987 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.7   4.8e-06     0.022     134     193 ..       1      59 [.       1      61 [. 0.94

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.8e-06
   CPP1-like 134 lnrKekklgravlltlvgLvvGlllGsllasllqvdvalsglsseellvslvtlvllwlv 193
                 ++rK+ +l+  vl++l++ v+ + +G  + + l++  +l++ ++  +++s+++  +lwl+
  CTQ28682.1   1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQ-LNLPQFFAHGAILSIFVGAVLWLA 59 
                 689**************************999955.999*******************97 PP

>> DUF5134  Domain of unknown function (DUF5134)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.9   3.2e-05      0.14       6      45 ..       8      59 ..       3      88 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.2e-05
     DUF5134  6 avlhllMavgMaaMawpagvalpsagq............lavvfalaalwfl 45
                 ++ +lM++g ++M++ +g  +  + +            +  +f+ a+lw +
  CTQ28682.1  8 LLGNVLMGLGLVVMVVGVGYSILNQLPqlnlpqffahgaILSIFVGAVLWLA 59
                56899**************998877744776666444433333444444433 PP

>> DUF4282  Domain of unknown function (DUF4282)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.1   6.3e-05      0.28      15      69 ..      12      64 ..       7      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.3e-05
     DUF4282 15 vlYilgivlialvllslivgafaalseslsagggllllllaviafllmilllRiv 69
                vl  lg+v++++++ ++i++ + +l   l+ + + +++l + ++++l+++ +Ri+
  CTQ28682.1 12 VLMGLGLVVMVVGVGYSILNQLPQL--NLPQFFAHGAILSIFVGAVLWLAGARIG 64
                4556888999999999999999999..9*************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 692.95
//
Query:       CTQ28683.1  [L=194]
Description: peptidyl-tRNA hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-56  188.9   0.0    7.9e-56  188.7   0.0    1.0  1  Pept_tRNA_hydro  Peptidyl-tRNA hydrolase


Domain annotation for each model (and alignments):
>> Pept_tRNA_hydro  Peptidyl-tRNA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.7   0.0   4.4e-60   7.9e-56       1     170 [.       5     187 ..       5     188 .. 0.92

  Alignments for each domain:
  == domain 1  score: 188.7 bits;  conditional E-value: 4.4e-60
                      EEEE---SSTCCTTCGGGHHHHHHHHHHHH............TCEEEEEETTEEEEEEEESS-GGGHHHHHHHHHHHCT--..GEEEEEEETTS CS
  Pept_tRNA_hydro   1 livGLGNpgkeYektRHNvGflvvdelakk............aevaegkiegekvlllkPqtymNlsGeavkellkfykieseeilvvhDdldl 82 
                      livGL Npg+eY+ tRHN+G ++vd la++            + +++ +++ge+v ll P+t+mNlsG+av+++++fy+i+++eilv hD+ldl
       CTQ28683.1   5 LIVGLANPGAEYAATRHNAGAWYVDLLADRhraplreeskffGYTSRINLAGEDVRLLVPTTFMNLSGKAVAAMATFYRINPDEILVAHDELDL 98 
                      8***************************99887777776665445555********************************************** PP

                      STTEEEEEESS--TT-HHHHHHHHHHT-S-.SEEEEEEE---ST-CGGHHHHCTSB-HHHHHC.HHHHHHHHHHCHHHHHHHTSCCHCCC CS
  Pept_tRNA_hydro  83 plgkirlkkkgssgghnGlksiikklgtek.fvRlriGIgrpekakkkvadyVLskfskeeek.leevlekaaealeellkeeleaamnk 170
                      p+g +++k +g++gghnGlk+ii+klg++  f+Rlr+GIg+p + k+kv+ +VL+k +++e+k +++++++aa+++e +lk++l++a+n+
       CTQ28683.1  99 PPGVAKFKLGGGHGGHNGLKDIISKLGNNPnFHRLRVGIGHPGD-KNKVVGFVLGKPPASEQKlIDDAVDEAARCTEIWLKDGLTKATNR 187
                      **************************98755***********86.767**********999888****************9889999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1500.85
//
Query:       CTQ28684.1  [L=363]
Description: putative GTP-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-40  135.8   0.8      1e-39  134.6   0.3    1.9  2  YchF-GTPase_C  Protein of unknown function (DUF933)
    1.2e-21   76.9   0.0    2.6e-21   75.8   0.0    1.6  1  MMR_HSR1       50S ribosome-binding GTPase
    4.7e-09   36.0   0.0    3.1e-08   33.3   0.0    2.1  2  FeoB_N         Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.032   14.3   0.6        0.2   11.7   0.2    2.5  2  TGS            TGS domain


Domain annotation for each model (and alignments):
>> YchF-GTPase_C  Protein of unknown function (DUF933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.81   3.6e+03      59      80 ..     108     129 ..      93     132 .. 0.77
   2 !  134.6   0.3   2.2e-43     1e-39       1      84 []     279     362 ..     279     362 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.81
  YchF-GTPase_C  59 keagklrlegkdyvvqdgDiil 80 
                    ++ + +++ gk    +d D+i+
     CTQ28684.1 108 ENDNIIHVAGKVNPTEDIDVIN 129
                    4566788899999999999986 PP

  == domain 2  score: 134.6 bits;  conditional E-value: 2.2e-43
  YchF-GTPase_C   1 LitffTaGekevraWtikkgttapqaAgviHsDfekgFiraevikyedlvelgseaaakeagklrlegkdyvvqdgDiilfkfN 84 
                    L+t+fTaG kevraWti  g+tapqaAg+iH+DfekgFira++i+yed++++++e+ akeagk+r egkdy+v+dgD+++f fN
     CTQ28684.1 279 LQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTIAYEDFIAYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFLFN 362
                    89********************************************************************************98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0   5.8e-25   2.6e-21       2      87 ..       5     112 ..       4     150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 5.8e-25
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE.................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke.................ielvDtpGliegaseekglgkaflalee.adlillv 82 
                 ++ivG pNvGKStL+nalt++  +++++p++T+++n+g v + +++                 +e+vD++Gl++gas+++glg++fl +++ +++i +v
  CTQ28684.1   5 CGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRldklaeivkpqrilpttMEFVDIAGLVKGASKGEGLGNQFLTNIReTEAIGHV 103
                 79************************************9984332255566667777777777************************988779****** PP

                 EETT....T CS
    MMR_HSR1  83 vdas....e 87 
                 v++      
  CTQ28684.1 104 VRCFendnI 112
                 *99843220 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   6.9e-12   3.1e-08       2      44 ..       4      46 ..       3      55 .. 0.90
   2 ?   -0.3   0.0      0.15   6.7e+02     101     153 ..     196     248 ..     162     250 .. 0.65

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 6.9e-12
                EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklkl 44
                ++ +vG pnvGk+tlfnalt+a  + +N+p  t+e ++g + +
  CTQ28684.1  4 KCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPM 46
                5679********************************9998765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.15
                 HHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH CS
      FeoB_N 101 llelgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieell 153
                  l l+  + +a    d  e++ +  ++++++e+ g  vv+++a+ + +i el 
  CTQ28684.1 196 FLTLKPTMYIANVNEDGFENNPYLDQVRAIAEQEGSVVVPVCAAVEADIAELD 248
                 45555555555444555555555556677788888888888888888888876 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.51   2.3e+03      14      32 ..     228     246 ..     219     246 .. 0.86
   2 ?   11.7   0.2   4.6e-05       0.2      13      38 ..     295     320 ..     284     360 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.51
                 ETTB-HHHHHHHHSTTHHH CS
         TGS  14 prgatveDfAykIhrslak 32 
                 ++g+ v+ ++ ++  ++a+
  CTQ28684.1 228 QEGSVVVPVCAAVEADIAE 246
                 57999999****9999985 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.6e-05
                 EETTB-HHHHHHHHSTTHHHHEEEEE CS
         TGS  13 lprgatveDfAykIhrslakkfiyAl 38 
                 +p gat+ ++A kIh+++ k fi A+
  CTQ28684.1 295 IPVGATAPQAAGKIHTDFEKGFIRAQ 320
                 899*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2750.87
//
Query:       CTQ28685.1  [L=109]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00011   22.0   0.0     0.0002   21.2   0.0    1.4  1  DUF1869   Domain of unknown function (DUF1869)


Domain annotation for each model (and alignments):
>> DUF1869  Domain of unknown function (DUF1869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.1e-08    0.0002       4      56 ..      55     107 ..      52     108 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.1e-08
                 -EEEEEEETTT--EEEEEE--SCGGC-HHHHHHHHHHHHHHHHHTTSSSSS-S CS
     DUF1869   4 elllTvTNknNGVSVDkefeslaeLkdpevaaevvKdLiNivRgYdsdeetnv 56 
                 e+ l +TN   G+SV+    +  e + p+     +K ++ iv gY++ e+t +
  CTQ28685.1  55 EISLSLTNAASGISVELHHPASGESATPAFIEGELKKIVQIVDGYEAAEDTHI 107
                 67899*********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 847.73
//
Query:       CTQ28686.1  [L=304]
Description: putative rhizopine-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-51  174.5  12.1    3.4e-51  174.3  12.1    1.0  1  Peripla_BP_4  Periplasmic binding protein domain
    5.2e-13   49.1   1.7    5.7e-13   48.9   1.7    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    1.6e-05   24.8   5.5      5e-05   23.1   4.6    1.8  2  Peripla_BP_6  Periplasmic binding protein
    0.00084   19.7   0.2     0.0044   17.3   0.0    2.2  2  Peripla_BP_3  Periplasmic binding protein-like domain
     0.0017   17.6   0.0      0.013   14.6   0.0    2.1  2  ANF_receptor  Receptor family ligand binding region
  ------ inclusion threshold ------
      0.095   12.4   0.3        2.4    7.9   0.0    2.6  3  PGM_PMM_I     Phosphoglucomutase/phosphomannomutase, alpha/be


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.3  12.1   1.2e-54   3.4e-51       1     258 []      24     279 ..      24     279 .. 0.96

  Alignments for each domain:
  == domain 1  score: 174.3 bits;  conditional E-value: 1.2e-54
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTT..GCTTT- CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsd..dapsge 95 
                   igv++ +++ +f + +r+ +e+ a++  ++v++  da++d+ +Q++q++++ia+gvd+iiv+pvds+   +  k a++a++p v +++   d+   +
    CTQ28686.1  24 IGVSMAYFDQNFLTIIRQSIEKEAQARHVDVQF-EDARGDTGRQADQVQSFIASGVDAIIVDPVDSASTPQLTKMAQQAKMPLVYVNRTpgDKTLPP 119
                   89*******************************.6******************************9888899999**************99888899 PP

                   CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESS CS
  Peripla_BP_4  96 rlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanp.ldgilaan 191
                   ++ +vg d+ ++G+lq+e+la+  + k g+v+i+ G+++d+ a +r++ +++v ++yp +k+v++ ++an++++++ + ++++  + + +d + a+n
    CTQ28686.1 120 GVVFVGSDERESGTLQMEALAKLANYK-GNVAIMIGNLTDAGALQRTKDVEQVVAKYPAMKVVQK-QPANYSRSEGMDLMQNWTGNGEaIDIVAANN 214
                   999************************.***********************************95.677****************7744******** PP

                   CCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT-- CS
  Peripla_BP_4 192 dgmaegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGkk 258
                   d+ma+ga+ ale+++  +k ++ g+Datp  l+a+++ +i+ tv+qd+ ++g++a+ +a++l+kG+k
    CTQ28686.1 215 DEMAIGAAMALEKSQ--KKLLIGGIDATPDGLKALASDKIQVTVFQDAVGQGKTALAVALKLIKGEK 279
                   *************44..6777********************************************97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   1.7   1.9e-16   5.7e-13       2     204 ..      22     230 ..      21     294 .. 0.82

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.9e-16
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-.SSHHHHHHHHHHHHHTT-SEEEEE-S-GG.HHHHHHHHHH.T-EEEEESS--B-T... CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaa.geeedlakaidllkakgidgliiatsdts.fdditakaes.gipvialedaidap... 92 
                   +k+g+ +++ d+ f   + + i+k+a++  vdv    a g+ + +a ++++  a+g+d++i+   d    +++t++a++  +p + ++++  +    
    CTQ28686.1  22 EKIGVSMAYFDQNFLTIIRQSIEKEAQARHVDVQFEDArGDTGRQADQVQSFIASGVDAIIVDPVDSAsTPQLTKMAQQaKMPLVYVNRTPGDKtlp 118
                   6889999999999999999*************977554155666779999999**********7777669*******************95544455 PP

                   TTS-EEEE-HHHHHHHHHHHHHHHHHHHT.GEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SS CS
  Peripla_BP_1  93 dgvPcvipddtqageestqkLiaeghkrp.iallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivain 188
                    gv  v  d+ + g+ + + L + +  ++ +a++ g+    +a +r++  ++ +a+    +k v+      ++ ++ +++++   ++  id++ a+n
    CTQ28686.1 119 PGVVFVGSDERESGTLQMEALAKLANYKGnVAIMIGNLTDAGALQRTKDVEQVVAKYPA-MKVVQKQPANYSRSEGMDLMQNWTGNGEAIDIVAANN 214
                   67778889*************************************************55.77788888888999*********************** PP

                   HHHHHHHHHHHHHTT. CS
  Peripla_BP_1 189 deaalGavlalkkeGr 204
                   de+a+Ga++al+k  +
    CTQ28686.1 215 DEMAIGAAMALEKSQK 230
                   ************9875 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   4.6   1.7e-08     5e-05      41     239 ..      50     251 ..      25     261 .. 0.79
   2 ?    1.8   0.1     0.051   1.5e+02      42      71 ..     251     281 ..     209     293 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.7e-08
                   EEEEEEEEE-TTSHHHHHHHHHHHHHCT--SE.EEE-BSHHHHHHHHHHHHHHT-EEEESS-HHCCTT.STTEEESS--HHHHHHHHHHHHHH..HT CS
  Peripla_BP_6  41 rkielverDdaydpdraaeaarrlvdqdgvda.lvgplssavaaavaevlakdgvpvigpagltgekc.spyvfslgpsysaqasalveylak..el 133
                   r ++++ +D  +d+ r a++++ ++   gvda +v+p+ sa + ++++ +++++ p++++  + g+k+  p v+ +g + + +++  +e+lak  ++
    CTQ28686.1  50 RHVDVQFEDARGDTGRQADQVQSFIA-SGVDAiIVDPVDSASTPQLTKMAQQAKMPLVYVNRTPGDKTlPPGVVFVGSDERESGTLQMEALAKlaNY 145
                   7899**********************.776652689************************9999876626667777888888888889998875456 PP

                   TSCEEEEEEES.SHHHHHHHHHHHHHHHCCTEE.EEEEEEE-TTHHHHHHHHHHHHTTT-SE.EEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC- CS
  Peripla_BP_6 134 ggkkvalvyad.yafgregiaalkaaakaaGge.vvgeepvplgttdfsaqvlqikaagada.vllagtgadlaallkaaaeaGldakrillvswsg 227
                   +g  + ++++  +a   +  ++++++++++    vv+  p   + ++   ++++    g  + +++a+  ++++ ++ a+++   +   +l+++ ++
    CTQ28686.1 146 KGNVAIMIGNLtDAGALQRTKDVEQVVAKYPAMkVVQKQPANYSRSEGMDLMQNWTGNGEAIdIVAANNDEMAIGAAMALEKSQKK---LLIGGIDA 239
                   78888888877355556667899999999977679999999999999888888888887777777777777777776666666444...66777777 PP

                   CHHHHHHHHHHH CS
  Peripla_BP_6 228 seedlkalggea 239
                   ++  lkal+ ++
    CTQ28686.1 240 TPDGLKALASDK 251
                   777777777665 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.051
                   EEEEE.EEE-TTSHHHHHHHHHHHHHCT--S CS
  Peripla_BP_6  42 kielv.erDdaydpdraaeaarrlvdqdgvd 71 
                   ki+++   D  ++ ++a+++a +l+ +++v 
    CTQ28686.1 251 KIQVTvFQDAVGQGKTALAVALKLIKGEKVE 281
                   7777746788899*************99995 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.49   1.5e+03     114     129 ..      86     101 ..      72     131 .. 0.83
   2 !   17.3   0.0   1.5e-06    0.0044      45     164 ..     182     294 ..     147     296 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.49
                   CCCSSSS--EEEE--H CS
  Peripla_BP_3 114 laalssPplTtvrqpl 129
                   + + s+P+lT ++q++
    CTQ28686.1  86 VDSASTPQLTKMAQQA 101
                   4477889999888876 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.5e-06
                   EEEE-S-SS-SSHHHHH.....HHHHHCC..-SEEEEESSCCHHHHHHHHHCCTT--TTTTEEEEBSS--SCC..CSSSS--.EEEE--HHHHHHHH CS
  Peripla_BP_3  45 netvvaaddpaaaaaaraalllqalklaa..lPtAviaasDelAlgvlqalreaglrvPedlsvigfddsela..alssPpl.TtvrqpleelGraa 136
                   ++ +++  ++++ + ++++        ++    + v a++De+A+g+  al+  +     +l + g+d ++    al+s ++  tv q++ + G++a
    CTQ28686.1 182 QKQPANYSRSEGMDLMQNWT-------GNgeAIDIVAANNDEMAIGAAMALEKSQK----KLLIGGIDATPDGlkALASDKIqVTVFQDAVGQGKTA 267
                   33333333333333333333.......3332227999****************999....599999**99777778888888669************ PP

                   HHHHHHHHTT---S--EEEE--EEE--G CS
  Peripla_BP_3 137 aellldllegekappeqvllppelveRe 164
                   +   l+l+ + ++++++v +p elv+ e
    CTQ28686.1 268 LAVALKLI-KGEKVESHVWIPFELVTKE 294
                   ********.5555777778999999876 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.4e-06     0.013      24     115 ..      51     144 ..      42     195 .. 0.80
   2 ?    0.5   0.0     0.087   2.6e+02      20      51 ..     247     280 ..     243     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.4e-06
                   EEEEEEEE-TT-HHHHHHHHHHHCCCCEEEEEE.-SSHHHHHHHHHHHCCTT-EEEESS---GGGG-TTTTTTE....EESS--CHHHHHHHHHHHH CS
  ANF_receptor  24 klgyeiidtccdfslaleaaldflkgkvvaviG.pssssvsdavaslanlfkiPvisygstspelsdknryptf....lrtvpsdtsqaqAivdilk 115
                    ++++ +d   d+ +   ++++f++  v+a+i  p+ s+++ ++ ++a+++k+P++ y  ++ +  dk+  p +       + s t q++A++++ +
    CTQ28686.1  51 HVDVQFEDARGDTGRQADQVQSFIASGVDAIIVdPVDSASTPQLTKMAQQAKMPLV-Y--VNRTPGDKTLPPGVvfvgSDERESGTLQMEALAKLAN 144
                   567888999****************77***999899********************.4..5566666666555544444444445556666666555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.087
                   STTEEEEEEE.EE-TT-HHHHHHHHHHHCCC.CE CS
  ANF_receptor  20 lpgiklgyei.idtccdfslaleaaldflkg.kv 51 
                   l + k+++++ +d   + ++al++al+++kg kv
    CTQ28686.1 247 LASDKIQVTVfQDAVGQGKTALAVALKLIKGeKV 280
                   5566999***77777***************9445 PP

>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.077   2.3e+02      62      89 ..      71     101 ..      65     109 .. 0.83
   2 ?    7.9   0.0   0.00079       2.4      41      76 ..     120     156 ..     108     165 .. 0.88
   3 ?   -3.5   0.0       2.6   7.8e+03      28      46 ..     217     235 ..     209     236 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.077
                 HHHHCCT-CEEEEE...EB-HHHHHHHHHHC CS
   PGM_PMM_I  62 aglaanGvevillg...llptPavsfairkl 89 
                 + ++a+Gv++i+++    ++tP +  ++++ 
  CTQ28686.1  71 QSFIASGVDAIIVDpvdSASTPQLTKMAQQA 101
                 66899*********99999***998777765 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00079
                 -EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE.E CS
   PGM_PMM_I  41 kkvvvGrDtRvssrelaealaaglaanGvevillg.l 76 
                 + v+vG D R s++   eala+ +  +G  +i++g l
  CTQ28686.1 120 GVVFVGSDERESGTLQMEALAKLANYKGNVAIMIGnL 156
                 679*********************9999999999844 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.6
                 HHHHHHCHHCSTS-EEEEE CS
   PGM_PMM_I  28 qaiaeylkaeakkkkvvvG 46 
                 +ai+ +++ e+ +kk+++G
  CTQ28686.1 217 MAIGAAMALEKSQKKLLIG 235
                 4666666666678888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2244.27
//
Query:       CTQ28687.1  [L=471]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-53  179.9  13.2      7e-52  175.2   8.5    2.4  2  VasL           Type VI secretion system, EvfB, or VasL
    2.7e-20   72.7   2.4    4.7e-20   71.9   0.1    2.5  3  ImpA_N         ImpA, N-terminal, type VI secretion system
  ------ inclusion threshold ------
       0.13   12.3   0.7       0.55   10.3   0.1    2.1  2  DHR10          Designed helical repeat protein 10 domain
       0.94    9.6   8.8        1.1    9.4   0.8    2.3  2  GlnD_UR_UTase  GlnD PII-uridylyltransferase


Domain annotation for each model (and alignments):
>> VasL  Type VI secretion system, EvfB, or VasL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.1    0.0012       5.5      21     101 ..      88     172 ..      81     180 .. 0.77
   2 !  175.2   8.5   1.6e-55     7e-52       1     147 []     303     447 ..     303     447 .. 0.99

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0012
        VasL  21 eqlveqaqqlwPdsaav.....kaltrqWqqqlearalpaeslsgweqartqlqqLsdkLlelerqrgklTvSeLKsavydiqksl 101
                 + lv+q ++lwP+++ +     ++l+++ +q + +  l  e  ++ eqa++ lq     L++le    +  +S+L++ ++++ + +
  CTQ28687.1  88 SLLVRQGKNLWPQALPArteifRTLSKRLRQVIRTLNLTPEDVESLEQAERSLQSFDAVLQRLEIAPEN-QLSDLRALLHSTATRF 172
                 5689999*****98766222224689999**************************99999999976544.3466666666655555 PP

  == domain 2  score: 175.2 bits;  conditional E-value: 1.6e-55
        VasL   1 yqqqLerLeklsplaalrygeqlveqaqqlwPdsaavkaltrqWqqqlearalpaeslsgweqartqlqqLsdkLlelerqrgk.lTvSeLKsavydiq 98 
                 +q+qL++L++l+p++a++yg+qlv+qa ++wPd  ++++l++qW+qql+a alpae+l+gw+++++qlq+L+d+L++l++q+gk lTvSeLK+av++i+
  CTQ28687.1 303 TQRQLGELARLAPDWAVSYGDQLVHQALIRWPD--QAQPLAQQWRQQLSAGALPAENLTGWSEGMQQLQRLADQLNALDEQKGKyLTVSELKTAVFAIT 399
                 699******************************..**************************************************************** PP

        VasL  99 kslnseiPleeqLRqLaaqkekgqpvspallkqiedrlnallaryyllq 147
                 +s+n+++PleeqLRqLaa  + +qp+++a+ +  e +l++l+++y+ll+
  CTQ28687.1 400 QSFNRAVPLEEQLRQLAA-LPVDQPWPAARGSLAELHLQQLIVEYALLK 447
                 ******************.**************************9986 PP

>> ImpA_N  ImpA, N-terminal, type VI secretion system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.1   1.1e-23   4.7e-20       6     117 ..       8     112 ..       3     118 .. 0.91
   2 ?   -2.4   0.1       1.1   4.9e+03      85     103 ..     324     342 ..     319     353 .. 0.78
   3 ?   -1.2   0.0      0.48   2.1e+03      73      93 ..     354     374 ..     346     378 .. 0.82

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 1.1e-23
      ImpA_N   6 ddspcGedlrydpefdaleearnkarsdqsieakaadWkkveelaeelleerskDLrvavwlteallrleglaglaeglellaelleryWdelhPalde 104
                  + ++G d+r  ++f+al++++nk ++    ++ + +W+  e+la+ lle+++ DL+ ++w+t a++rl g+ag++egl+l+++ll r+ ++l+P++  
  CTQ28687.1   8 RHYKAGGDPRTLADFMALRAEMNKLSH---PARPDINWPYAEQLARGLLEHHGADLQTVAWYTLARARLGGVAGINEGLTLMESLLVRQGKNLWPQAL- 102
                 56789********************98...69****************************************************************85. PP

      ImpA_N 105 ddleaRvnalawL 117
                     aR +++++L
  CTQ28687.1 103 ---PARTEIFRTL 112
                 ...3466555555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
      ImpA_N  85 ellaelleryWdelhPald 103
                 +l+++ l r+ d++ P ++
  CTQ28687.1 324 QLVHQALIRWPDQAQPLAQ 342
                 7889999999999999875 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.48
      ImpA_N  73 rleglaglaeglellaeller 93 
                   e l+g++eg++ l++l ++
  CTQ28687.1 354 PAENLTGWSEGMQQLQRLADQ 374
                 5678999******99999876 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00012      0.55      19      71 ..     100     152 ..      98     175 .. 0.90
   2 ?   -0.5   0.1      0.28   1.2e+03      40      55 ..     366     381 ..     357     393 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00012
       DHR10  19 relqakidalqvvekdlrsciklleeieaelakleeakkklkelrdaleekei 71 
                 ++l a+++ +  + k lr++i+ l+   +++++le+a++ l++  + l+ +ei
  CTQ28687.1 100 QALPARTEIFRTLSKRLRQVIRTLNLTPEDVESLEQAERSLQSFDAVLQRLEI 152
                 578899***********************************998888887776 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.28
       DHR10  40 klleeieaelakleea 55 
                 ++l+ ++++l++l+e+
  CTQ28687.1 366 QQLQRLADQLNALDEQ 381
                 3333334444443333 PP

>> GlnD_UR_UTase  GlnD PII-uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.8   0.00024       1.1      58     106 ..     112     160 ..     105     176 .. 0.88
   2 ?    4.1   1.7      0.01        47      54     132 ..     336     413 ..     324     418 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00024
  GlnD_UR_UTase  58 tlealeelvergllteeeakelreayrflrrlehrLqlladrqthrLpf 106
                    + + l++++++  lt+e+++ l++a+r l++   +Lq l+ + +++L +
     CTQ28687.1 112 LSKRLRQVIRTLNLTPEDVESLEQAERSLQSFDAVLQRLEIAPENQLSD 160
                    5678999999999******************************999985 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.01
  GlnD_UR_UTase  54 rerstlealeelvergllteeeakelreayrflrrlehrLqlladrqthrLpfdeeeqrrlaealgyredkaafmkelf 132
                    + +++++++++   +g l++e+    +e  + l+rl   L +l++++   L+ +e + +  a    + ++  +++++l+
     CTQ28687.1 336 QAQPLAQQWRQQLSAGALPAENLTGWSEGMQQLQRLADQLNALDEQKGKYLTVSELKTAVFAITQSF-NRAVPLEEQLR 413
                    66788999999999**************************************996555555555555.44444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3275.93
//
Query:       CTQ28688.1  [L=147]
Description: Type VI secretion system lysozyme-related protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-11   42.8   0.0    4.4e-11   42.4   0.0    1.2  1  GPW_gp25  Gene 25-like lysozyme


Domain annotation for each model (and alignments):
>> GPW_gp25  Gene 25-like lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.5e-15   4.4e-11       6      89 ..      32     111 ..      27     114 .. 0.93

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2.5e-15
                 HHHHHHHHHHCSBTTSSTT-TT-SBGGGHHHHCS--CHHHHHHHHHHHHHHHH-TTEEEEEEEE......CCCCTEEEEEEEEE CS
    GPW_gp25   6 svrrdleiLLntfpgervsvlnyGlpllallfaslsedreriareireailrfEpRirlvsveveveeededargrlrieIeat 89 
                 sv ++++ +Ln + g  +  ++yGlp+++ + + + + + ++ + + +++l++EpR+++ +v +  +++    +g+lr  I+a+
  CTQ28688.1  32 SVLDNMQRILNCRAGTLAHLPDYGLPDMTAVLQGMPASAHQLMSTLSAVLLKYEPRLQRIAVVM-LDQHA---PGELRYAIDAE 111
                 7999*******************************99*************************99.55555...9****999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1133.45
//
Query:       CTQ28689.1  [L=180]
Description: Type VI secretion lipoprotein, VC_A0113 family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-33  113.8   0.2    4.5e-33  113.5   0.2    1.1  1  T6SS-SciN   Type VI secretion lipoprotein, VasD, EvfM, TssJ, 
  ------ inclusion threshold ------
      0.028   13.7   0.0      0.039   13.2   0.0    1.1  1  Lyx_isomer  D-lyxose isomerase
       0.18   12.1   0.0       0.26   11.6   0.0    1.2  1  DUF1363     Protein of unknown function (DUF1363)
        0.4   11.3   0.2        0.4   11.3   0.2    1.9  2  LPAM_1      Prokaryotic membrane lipoprotein lipid attachment
       0.49   10.3   2.1       0.92    9.4   2.1    1.5  1  LPAM_2      Prokaryotic lipoprotein-attachment site


Domain annotation for each model (and alignments):
>> T6SS-SciN  Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.2   1.3e-36   4.5e-33       1     119 [.      49     169 ..      49     175 .. 0.95

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 1.3e-36
                 EEEEEEEEE-TT-S--TTS----EEEEEEEES--HHHHHS-HHHHHHSHHHHHGGGEEEEEEEEE-TT-EEEEEEEE-TT--EEEEEE--S-GG..G-B CS
   T6SS-SciN   1 ttldltleaaadlNpdeegrpsPvvvrvyqLkddsaFeqadffslqdddkeaLgadlvavkevvlrPgetrelslkldeearyvGvvaayrdld..kar 97 
                 +tl+l+l a++ +N +++g ++++vvr+yqLkd++aF+++d+ sl+  d +aL+ad va+k+v lrPge+++++++++ +a++v+v+a + d+d  +++
  CTQ28689.1  49 KTLHLDLRAREGVNNNAKGASLATVVRIYQLKDRQAFDNTDYPSLFAGDGQALQADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDltQNS 147
                 689************************************************************************************************ PP

                 -EEEEE--TTS.EEEEEEEE-S CS
   T6SS-SciN  98 wrlvlkipekkekkklkveldr 119
                 wrlvl+++e ++  ++ +e ++
  CTQ28689.1 148 WRLVLTRDELDPARPRIIEASQ 169
                 *********9997777776655 PP

>> Lyx_isomer  D-lyxose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.1e-05     0.039      97     165 ..      47     122 ..      41     136 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
  Lyx_isomer  97 qvtpmHfHwskaeDiinR.gGgkl..vielynsdedeklededv..tvsvDGvkktv..aageklrlkpGesitle 165
                 qv  +H   +  e + n   G++l  v+++y+ ++++ ++++d     + DG++ +    a + +rl+pGes+t+ 
  CTQ28689.1  47 QVKTLHLDLRAREGVNNNaKGASLatVVRIYQLKDRQAFDNTDYpsLFAGDGQALQAdrVAEKDVRLRPGESVTVD 122
                 788889999999999765257777446999**99999996665511567788765441158899*********985 PP

>> DUF1363  Protein of unknown function (DUF1363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.3e-05      0.26       9      66 ..      24      82 ..      19      94 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.3e-05
     DUF1363  9 igcgagntmdatfrsctphesfyyl.sinhdlkareaqnnntnsdticfsthlhkrsnr 66
                 gcg  +t+     s+t    +  + ++  dl+are  nnn++  +++   ++++  +r
  CTQ28689.1 24 TGCGLTQTVKDGAVSVTQSIFYPQVkTLHLDLRAREGVNNNAKGASLATVVRIYQLKDR 82
                699999999988888885433323314567************99888877777766665 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00011       0.4       5      17 ..      14      26 ..       9      26 .. 0.91
   2 ?   -3.4   0.3         5   1.8e+04       9      12 ..     132     135 ..     131     136 .. 0.42

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
      LPAM_1  5 llalgalllLsGC 17
                lla++++ +L+GC
  CTQ28689.1 14 LLAFLMVTVLTGC 26
                89*********** PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5
      LPAM_1   9 gall 12 
                 +a++
  CTQ28689.1 132 VAVA 135
                 4544 PP

>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.1   0.00026      0.92       2      16 ..      14      28 ..      13      29 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00026
      LPAM_2  2 llllallllLaGCGq 16
                ll+++ ++ L+GCG+
  CTQ28689.1 14 LLAFLMVTVLTGCGL 28
                799***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 1264.53
//
Query:       CTQ28690.1  [L=348]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-75  252.4   0.0    6.3e-75  252.2   0.0    1.0  1  T6SS_TssG  Type VI secretion, TssG


Domain annotation for each model (and alignments):
>> T6SS_TssG  Type VI secretion, TssG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.2   0.0   3.5e-79   6.3e-75       4     298 ..      10     308 ..       7     309 .. 0.93

  Alignments for each domain:
  == domain 1  score: 252.2 bits;  conditional E-value: 3.5e-79
   T6SS_TssG   4 rfdffqavrllerpese..plgeaarprdepvrfrqapslafpaseiasiearaeeeryrvevnflGLlGpnGpLPlhyteelleerreddealraFlD 100
                  ++f+++++lle+++++   +g+     dep+rfr++p ++fpa ei+ ++ +++ +++ v+v+f+GL+G+++pLP+hy+++++ +rre+ ea+++FlD
  CTQ28690.1  10 YMNFYRFCQLLEKNHPKapIIGSGWLVGDEPIRFRPHPGMGFPAGEIRGMDDPEPPRPPAVRVTFMGLYGVESPLPTHYSDDIA-QRREGVEATEDFLD 107
                 589********66665565999999999**********************555545599*************************.8************* PP

   T6SS_TssG 101 iFnhRllslfyrawakyrlavslerpaedrfsqyllaLvGlgspalrrr.alpdeallayagllarrtrsaegLeailsdyfgv..pveveefvgrwve 196
                 +FnhRl++++yr+w+ky+++++++++++d++sqyll L+Glg p+ ++  a p  ++la++ ++  + rs eg+ea+++ +     +++v ++ + +++
  CTQ28690.1 108 LFNHRLIAQYYRIWRKYSYPATFRAGGTDNISQYLLGLAGLGIPGCAAVaASPLSRFLALLPVMMLPGRSGEGMEALVALLA-PgtRATVYHHDPCRIP 205
                 ********************************************999995556666***********************443.346************* PP

   T6SS_TssG 197 ipeaqrtrlgaqnarLGedavlGsrvwdrqskfrirlgplsldeyrrllpggealraLaalvrfylgeeldvdleLvlkreevpparL..geeeaarLG 293
                 ++++  + ++++  +L ++ v+G+++ d+++++ ++l + + de+r +lpgge +  L+al++ +lg +ldv+l+L ++r+ +p a+L  ++e+a++LG
  CTQ28690.1 206 LSQPLTMSVRQP-VSLQHRPVMGTHATDVNGQVLLQLATEKPDEVRGWLPGGELFSDLMALLHVWLGSHLDVRLQLCVARHLLPDAQLccQQEHAVQLG 303
                 **9988888886.9****************************************************************************99******* PP

   T6SS_TssG 294 wtswL 298
                 +t++L
  CTQ28690.1 304 RTAVL 308
                 ***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2738.93
//
Query:       CTQ28691.1  [L=587]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.5e-186  619.2   0.1   8.4e-186  619.1   0.1    1.0  1  T6SS_TssF  Type VI secretion system, TssF


Domain annotation for each model (and alignments):
>> T6SS_TssF  Type VI secretion system, TssF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  619.1   0.1  4.7e-190  8.4e-186       1     601 [.       1     582 [.       1     584 [. 0.97

  Alignments for each domain:
  == domain 1  score: 619.1 bits;  conditional E-value: 4.7e-190
   T6SS_TssF   1 mddellryYerELaylreagaefAeeyPkiAarlgldgeeveDPhVeRLlegfAflaaRiqqklddefpelteaLlevlyPhylapiPSmavvqlepdp 99 
                 mdd +lry+++E++ylrea+++fA+++P+ Aa+l ld+ + +DP+VeRL+egfAf ++R+++k+dd++pelte+L+++l+Phyl++iPS+++v l+p  
  CTQ28691.1   1 MDDLTLRYFDAEMRYLREAAKAFAQAHPDRAAMLDLDKAGTPDPYVERLFEGFAFSVGRLREKIDDDLPELTEGLVSMLWPHYLRTIPSLSIVALTPT- 98 
                 99************************************************************************************************. PP

   T6SS_TssF 100 eegslaegftvprgtelesrpsegegtrcrFrtaqdvtLwPleiaearltsapaalpaaalaaaaaavlrlrLelt.gvsfaeldldrLrlyLagdeel 197
                   ++++ ++tvp+g e++srp + ++t cr+rt++d+tL Pl+i+ea +t++p++++a          lrlr++++  ++++++dl++L lyL +d+ +
  CTQ28691.1  99 -LPAMKIAETVPAGFEISSRPLGPKNTVCRYRTTRDLTLNPLAIEEAVMTAEPDGRSA----------LRLRFACSeLAEWSQTDLRHLALYLGEDAVT 186
                 .********************999*********************************9..........********87799****************** PP

   T6SS_TssF 198 asaLyelLlahvkavvvrdpgedeervvlpasalrpvGfdddeallpyeersfsgyrllqEyfafpekflFfdlsglqellarlageelelillldrad 296
                  saLy +L++  +a+++r pg+  erv l++  ++p  f+++++l+p+ e++fsgy+ll Eyf+f+ekf+F++l+gl+++  +++ ++++l +++++ +
  CTQ28691.1 187 GSALYLWLTRRQAALYLRLPGQT-ERVSLDG-YFSPGEFSEEDRLWPKGESAFSGYQLLLEYFTFREKFMFVQLNGLENITLPAGISHFTLEVVFSEVW 283
                 *********************97.9999998.7****************************************************************** PP

   T6SS_TssF 297 peleeavsaesfaLnctPviNLFekraepieldpteteyplvpdrsrpldyeiysvdeVegsgeegeeaefrpfyalr.....adgeapgayytvrrep 390
                 ++ +  vsa+s++L+c+PviNLF+++a+p++++  e+ey l+p+r +++++eiysvd+V+gsg +++ea+++pf ++r      +++ap++yy++r ++
  CTQ28691.1 284 QS-DLPVSASSLRLHCVPVINLFTLEADPLTISGLENEYLLRPKRLQDGHTEIYSVDSVTGSG-RTGEARYVPFTRFRhqggmMRRHAPERYYHTRVKR 380
                 **.*********************************************************999.88************9999888889**********9 PP

   T6SS_TssF 391 relsdrrnrrgtevflslvdrdeap.aeedleqlsiellctNrdlpel.lpvggstdltleesapvervrnlraptaprapplegelaWrlishlslny 487
                      + ++  ++++l+l++++++  +e++ e++s++++ tN++lp++ l+++  ++ ++  + +  +vrnl++pt p +pp+e++++Wr++shl + +
  CTQ28691.1 381 -----GVTGM-HDTWLILGGQQWEAdRELARETVSLRITGTNGQLPRRaLQSTLLDRCESIPA-TPLTVRNLCKPTLPAYPPAEDRYHWRVMSHLGTRF 472
                 .....66666.8*************7788888****************888887777776666.8889******************************* PP

   T6SS_TssF 488 lsltdggaeaLrellrlyafrddaatrrqidgivsvslrpvtrrvpgkgglvfarGveitltldesafeges.vylfgavLerffaryasinsftqlvl 585
                 l ++ + ae Lr++l+ly++r+d+ ++r++d+i +vs+++++r+    +g ++ rG++i++tld s+f g++ v lfg +L+rffa+ya++n+f ql+l
  CTQ28691.1 473 LNMMSS-AEVLRGTLSLYNWREDELNNRRLDAILAVSHHRIQRFE---QG-FLLRGLDIEVTLDGSGFTGAGdVHLFGDMLNRFFALYADMNQFNQLTL 566
                 ****98.**************************************...67.9*********************************************** PP

   T6SS_TssF 586 rsqqrgeiarwpprag 601
                 + q++g+++rw++++ 
  CTQ28691.1 567 IVQPEGKCIRWKENHS 582
                 ************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4562.63
//
Query:       CTQ28692.1  [L=1136]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-72  242.5  17.6    1.9e-71  241.1  17.6    1.8  1  IcmF-related  Intracellular multiplication and human macropha
    8.7e-52  175.7   2.3    2.5e-51  174.2   2.3    1.8  1  IcmF_C        Type VI secretion protein IcmF C-terminal


Domain annotation for each model (and alignments):
>> IcmF-related  Intracellular multiplication and human macrophage-killing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.1  17.6   2.1e-75   1.9e-71       1     307 [.     416     732 ..     416     734 .. 0.94

  Alignments for each domain:
  == domain 1  score: 241.1 bits;  conditional E-value: 2.1e-75
  IcmF-related   1 LpaLdalrdlleqlldyreeepplslrfGLyqgdkleaalraaYraalrqlllpplaarleaeLravaaap........dpeeayeaLKvYlMLsdp 89 
                   L+aL+al++ l ql+++ ++ +p++lr GL+q+d l+aal ++Y ++ + ll++++a +le++L a+++ p          + ay +LK YlML++p
    CTQ28692.1 416 LHALSALQKTLSQLEYRSQHCAPWYLRAGLSQNDDLLAALFPRYGEMAQPLLRDAAAHHLEEQLTAFVQLPpdsplrekMTKTAYGQLKQYLMLTRP 512
                   689********************************************************************************************** PP

  IcmF-related  90 erldaafladwltrdweralegergeqer..erllehldallaakr..aiaalspldealVaqaRaaL....rrvplaervYarlkaraeasar.pp 177
                   e++daa++a+ l++dw+++   + +  +   ++ll++++a l  ++  + ++    d+ lV+q+R +L    ++ + + ++Y++++a++  +++ ++
    CTQ28692.1 513 EKMDAAWFATTLMQDWSQRSGIADAVWQGsgPSLLAFYAASLVSHPqwRLPV----DDGLVSQVRTRLirqmGQRNSESTLYQKMLAQV--ANQyAD 603
                   ****************776665555444478*********999877566655....*********************************..5555** PP

  IcmF-related 178 vtladlv.GpdaaevftrsspltegvpglfTrkGyeevflkaldeaaeklleeddWVlgdltes.sseaspeqlakelrelYftdYaaeWqafLndl 272
                   ++lad++ ++da+++f++++    +vpg+fTr+++e+++++a++++++++++e dWVl+d+++   +++spe+l+++l e+Yf+d+  +W +fLn+l
    CTQ28692.1 604 MRLADMTaDTDASRLFSTDE----VVPGMFTRQAWEQAVQPAIEKVVAERRDEMDWVLSDTKQTaAQSTSPEALRARLAERYFADFSGAWLDFLNSL 696
                   *******************9....***********************************7777766899**************************** PP

  IcmF-related 273 rvkpfaslaqavealrllsdpd.sPlrrllqavade 307
                   r++++a+l++a+++l+l++d + sPl++l+++++ +
    CTQ28692.1 697 RWQRAATLSDAIDQLTLMADVRqSPLVALMNTLSVQ 732
                   ********************************9987 PP

>> IcmF_C  Type VI secretion protein IcmF C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2   2.3   2.8e-55   2.5e-51       2     203 .]     863    1060 ..     862    1060 .. 0.97

  Alignments for each domain:
  == domain 1  score: 174.2 bits;  conditional E-value: 2.8e-55
      IcmF_C    2 elleelaeqawrlvlksaraqlnrawqaevyepcqqalagrYPFarsssrdvsladfarffgpg.GlldkFfqkqLapfvdtsgntwrprqendkgl 97  
                  +l+++++eqaw++vl +a+++ln++w++ v+e +++a+ grYPF++ +s++vsl+ +a+++ ++ G +++F+q++L+++++++g++w +++ n +gl
  CTQ28692.1  863 TLFVRPMEQAWQQVLTPAAESLNAQWRSAVVEDWNSAFGGRYPFKN-TSSEVSLPLLAKYLDSEtGRIARFLQTRLNGVLHKEGSRWMADSINAQGL 958 
                  6899*****************************************9.99************************************************ PP

      IcmF_C   98 glspaflkqfqraarirdalfagggepsvefeirplplsagvtelkleidgqklryrhgpsawvelsWPgaasatgrarltltpdasggspstleae 194 
                  +++pafl++++++++++d+ fa +ge++++f++rp + + gv++++l id+qkl y +++  w+++sWP +++a+g a+l++ +    g++++ +++
  CTQ28692.1  959 TFNPAFLQAMNTLSHLSDVAFA-NGEAGLHFALRPGT-ADGVMQTELVIDSQKLVYMNQMPVWRRFSWPADTEAPG-ASLSWVS-TRAGTRQYGDFP 1051
                  **********************.9*************.*********************************88777.*****77.4677789***** PP

      IcmF_C  195 GpWalfRLl 203 
                  G W+++RLl
  CTQ28692.1 1052 GAWGWIRLL 1060
                  ********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 8410.46
//
Query:       CTQ28693.1  [L=385]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.071   12.8   0.4       0.13   12.0   0.4    1.4  1  zf_Hakai  C2H2 Hakai zinc finger domain


Domain annotation for each model (and alignments):
>> zf_Hakai  C2H2 Hakai zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   7.2e-06      0.13      12      25 ..      69      82 ..      63      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.2e-06
    zf_Hakai 12 CrRTYLSqRDLqAH 25
                C R YL  RDL+AH
  CTQ28693.1 69 CLRCYLWDRDLKAH 82
                99************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3103.90
//
Query:       CTQ28694.1  [L=88]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-22   78.9   7.4    2.7e-22   78.7   7.4    1.0  1  PAAR_motif  PAAR motif


Domain annotation for each model (and alignments):
>> PAAR_motif  PAAR motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   7.4   1.5e-26   2.7e-22       2      70 .]       9      80 ..       8      80 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 1.5e-26
                -BTTB---BB-----SEEETTEEB-BTT-BB....--E..--B----SSEEETTEEB-BTT-BBTTS-BB-. CS
  PAAR_motif  2 GdkthhgGpiipgsptvliggkpaArvgdsvvCp.pck..gaiakgsstvligGkpaArvgdktaCgatvis 70
                G+kt+hgG +i++s+t++++gkp+A+vgd+v+Cp p++  +ai++g++ +  +Gk ++++g+k++Cg++vis
  CTQ28694.1  9 GHKTTHGGAVISASSTMIVNGKPVALVGDKVSCPiPGHgtNAIIEGAPEWSSDGKAIVVDGCKCQCGCQVIS 80
                99********************************988899******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 738.06
//
Query:       CTQ28695.1  [L=108]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 861.96
//
Query:       CTQ28696.1  [L=87]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.091   12.7   0.0      0.091   12.7   0.0    1.0  1  SBP_bac_1  Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.1e-06     0.091      95     140 ..      22      70 ..       6      86 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.1e-06
                 HHHTHHHHCE.EE....ES.EEEE.E..EEEEEEETTTHHCTTGGGSHBHHHHHH CS
   SBP_bac_1  95 ssvlpkilds.kv....ly.vPly.a..argliYNkdlfekagldppwtWdelve 140
                 ++++++ + + ++    +y +P+  +  + g+ YNkdlf +       t+  ++e
  CTQ28696.1  22 MVYVEAKIVMtAYrgeeIYtLPMPhQnsSVGFTYNKDLFSETV-----TFY-PLE 70 
                 44444433333556789888887554479**********9533.....333.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 672.59
//
Query:       CTQ28697.1  [L=87]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       261  (0.0145574); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 660.53
//
Query:       CTQ28698.1  [L=297]
Description: Sulfatase modifying factor 1-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-36  125.1   0.0    6.8e-36  124.2   0.0    1.4  1  FGE-sulfatase  Sulfatase-modifying factor enzyme 1


Domain annotation for each model (and alignments):
>> FGE-sulfatase  Sulfatase-modifying factor enzyme 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   0.0   3.8e-40   6.8e-36       3     228 ..      39     255 ..      37     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 3.8e-40
                    TTEEEE-SEEEEES-........TSTTGGCCC-S-EEEEES-EEEESS--BHHHHHHHHHHH....HSSETTEEEEETSCTTBCCTTC-SSTT-TT CS
  FGE-sulfatase   3 pemvlipgGsfemGs........eektandeeapahevtvraFaidkteVTnaqyaafveatgyeteaasqwwaeveganvrhpegrksdikkrad 90 
                     +mv ++gG+f mG          +   n+++++ h+v +++F i+k++VTn +y+++++ tg +           +  n+   e+  +  +k++ 
     CTQ28698.1  39 SNMVPVKGGEFLMGDfgplvgekLPFSINQDDKVLHKVVLSDFSISKFKVTNDDYNKYLQITGIK----------KPPINILVKEY--PSLQKGDY 122
                    68******************976666789999*****************************9955..........34445555554..43444443 PP

                    SB--S--HHHHHHHHHHHCHHHTS-EE---HHHHHHHHHTT-SSSSCTTBSTTSCCGB...S.STTTTB--TTCGGS-SS.---TT-S-B-TTS-B CS
  FGE-sulfatase  91 hPvvhVsweDavaYArwlgkktgegyrLPteaEweyAArggkkgreypwgdelkpakniwqG.slakfekeaaaadsqngrtspvgsfppnalGly 185
                       v+V+w+ a+ Y++wlgk++ + ++LPtea+weyAAr   +g+  p+  +     +   G ++ ++++  + +d++     pvg++ppn+lGly
     CTQ28698.1 123 --SVGVTWQQAKDYCQWLGKESDRNIDLPTEAQWEYAARS--RGQYIPFATNNG---EFLPGkNIPSQDELSEYTDGAGIPIYPVGKYPPNPLGLY 211
                    ..69**********************************97..455555544433...23344446666777777788888899************* PP

                    -TTCSSEEEEEEE--.THCCH-SSCS----SS-SSEEEEC--TT CS
  FGE-sulfatase 186 DmaGNvwEWtsdwyk.kyalapaeelsqeaekgelrvvkGgswl 228
                    Dm    +EWt+dwy+  y  ++  +  q   kg  +v++G+   
     CTQ28698.1 212 DMGLSGSEWTNDWYAsDYYSHSPVNDPQGPVKGTEKVLRGNVGG 255
                    ***************9888888888899999999******8655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2382.46
//
Query:       CTQ28699.1  [L=297]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-37  127.3   0.0    2.1e-36  125.9   0.0    1.5  1  FGE-sulfatase  Sulfatase-modifying factor enzyme 1


Domain annotation for each model (and alignments):
>> FGE-sulfatase  Sulfatase-modifying factor enzyme 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   0.0   1.1e-40   2.1e-36       3     224 ..      39     251 ..      37     269 .. 0.82

  Alignments for each domain:
  == domain 1  score: 125.9 bits;  conditional E-value: 1.1e-40
                    TTEEEE-SEEEEES-........TSTTGGCCC-S-EEEEES-EEEESS--BHHHHHHHHHHH....HSSETTEEEEETSCTTBCCTTC-SSTT-TT CS
  FGE-sulfatase   3 pemvlipgGsfemGs........eektandeeapahevtvraFaidkteVTnaqyaafveatgyeteaasqwwaeveganvrhpegrksdikkrad 90 
                     +mv ++gG+f mG          +   n+++++ h+v +++F i+k++VTn +y+++++ tg ++            + +    ++++  +k++ 
     CTQ28699.1  39 SNMVPVKGGEFLMGDfgplvgqkLPFSINQDDKVLHKVVLSDFSISKFKVTNDDYNKYLQITGVKK------------SPIHIFLKNYPSLQKGD- 121
                    68******************98666778999******************************99553............33333333233333333. PP

                    SB--S--HHHHHHHHHHHCHHHTS-EE---HHHHHHHHHTT-SSSSCTTBSTTSCCGB...S.STTTTB--TTCGGS-SS.---TT-S-B-TTS-B CS
  FGE-sulfatase  91 hPvvhVsweDavaYArwlgkktgegyrLPteaEweyAArggkkgreypwgdelkpakniwqG.slakfekeaaaadsqngrtspvgsfppnalGly 185
                       v+V+w+ a+ Y++wlgk +g++++LPtea+weyAAr   +  ++p+ + ++       G ++  +++ +  +d++ +   pvg++ppn+lGly
     CTQ28699.1 122 -YSVGVTWQQAKDYCQWLGKGSGKKIDLPTEAQWEYAARSRGQYFQFPTNNGEYL-----PGkNVPGKDELDIYTDGFGFPFYPVGKYPPNPLGLY 211
                    .369**********************************98444444444444443.....343466689999999*****9*************** PP

                    -TTCSSEEEEEEE--.THCCH-SSCS----SS-SSEEEEC CS
  FGE-sulfatase 186 DmaGNvwEWtsdwyk.kyalapaeelsqeaekgelrvvkG 224
                    Dm    +EWt+dwy+  y  ++  +  q   +g ++v++G
     CTQ28699.1 212 DMGLSGSEWTNDWYAaDYYSHSPVNDPQGPAQGTKKVLRG 251
                    ***************988888888888999999999**99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2255.65
//
Query:       CTQ28700.1  [L=296]
Description: Sulfatase modifying factor 1-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-37  130.1   0.0    1.2e-37  129.9   0.0    1.1  1  FGE-sulfatase  Sulfatase-modifying factor enzyme 1


Domain annotation for each model (and alignments):
>> FGE-sulfatase  Sulfatase-modifying factor enzyme 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0     7e-42   1.2e-37       2     244 ..      38     272 ..      37     294 .. 0.83

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 7e-42
                    STTEEEE-SEEEEES-........TSTTGGCCC-S-EEEEES-EEEESS--BHHHHHHHHHHH....HSSETTEEEEETSCTTBCCTTC-SSTT-T CS
  FGE-sulfatase   2 apemvlipgGsfemGs........eektandeeapahevtvraFaidkteVTnaqyaafveatgyeteaasqwwaeveganvrhpegrksdikkra 89 
                    + +mv ++gG+f mG          +   +++++  h+v +++F i+k++VTn +++ +++ t ++         +v+    rhp+        + 
     CTQ28700.1  38 VSNMVPVQGGEFLMGDfgplvgekLPFSIQQDDKNLHKVILSDFSISKYKVTNDDFNVYLKVTDKK-------NPPVDILAKRHPSL------LKG 120
                    578******************9765667899999****************************8655.......57899999999997......899 PP

                    TSB--S--HHHHHHHHHHHCHHHTS-EE---HHHHHHHHHT.T-SSSSCTTBSTTSCCGB...S.STTTTB--TTCGGS-SS.---TT-S-B-TTS CS
  FGE-sulfatase  90 dhPvvhVsweDavaYArwlgkktgegyrLPteaEweyAArg.gkkgreypwgdelkpakniwqG.slakfekeaaaadsqngrtspvgsfppnalG 183
                    d P+ +V w+ a+ Y++wlg k+g++++LPtea+we+AAr  g+     +  +e++p      G ++ ++++ ++ +d+      pvg++p+n+lG
     CTQ28700.1 121 DYPA-GVIWQQAKDYCQWLGIKSGKKIDLPTEAQWEFAARSrGQYLPFATNNGEFSP------GkNVPSQDELNKYTDGMGLPIYPVGKYPSNPLG 209
                    9996.899*******************************982333333444445555......4446778888888899999999*********** PP

                    -B-TTCSSEEEEEEE--.THCCH-SSCS----SS-SSEEEEC--TTS.T.TGGCTSTT-E.EE CS
  FGE-sulfatase 184 lyDmaGNvwEWtsdwyk.kyalapaeelsqeaekgelrvvkGgswlkae.lssllraafrasa 244
                    lyDm    +EWt+dwy+  y  ++  ++ q  e+g  +v++G+   +++ +  + r+++    
     CTQ28700.1 210 LYDMGLSGSEWTNDWYAaDYYSNSPVKNPQGPEQGTEKVLRGNVGGDRQyALTMFRQSASPLP 272
                    *****************99999999999**************988877655555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2444.89
//
Query:       CTQ28701.1  [L=753]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.7   0.2      0.035   14.3   0.2    1.6  1  HALZ      Homeobox associated leucine zipper


Domain annotation for each model (and alignments):
>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2     2e-06     0.035      20      40 ..      94     114 ..      90     115 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2e-06
        HALZ  20 dydsLkkenekLkaelqeLke 40 
                  y++L+k n++L++el++L++
  CTQ28701.1  94 AYEALNKANQALRKELMSLTA 114
                 699****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5510.20
//
Query:       CTQ28702.1  [L=828]
Description: Rhs element Vgr protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-68  229.5   4.3    6.3e-68  229.3   3.4    1.5  2  Phage_GPD      Phage late control gene D protein (GPD)
    1.1e-54  184.5   5.1    2.1e-54  183.5   5.1    1.5  1  DUF2345        Uncharacterized protein conserved in bacteria 
    3.9e-33  113.8   0.6    1.1e-32  112.3   0.6    1.9  1  T6SS_Vgr       Putative type VI secretion system Rhs element 
     0.0092   15.4   0.8      0.092   12.1   0.1    2.6  3  Sarcoglycan_1  Sarcoglycan complex subunit protein
  ------ inclusion threshold ------
       0.14   11.5   2.4       0.25   10.7   1.8    1.7  1  Cthe_2159      Carbohydrate-binding domain-containing protein
       0.22   11.5   2.6       0.56   10.2   2.6    1.7  1  Sugarporin_N   Maltoporin periplasmic N-terminal extension


Domain annotation for each model (and alignments):
>> Phage_GPD  Phage late control gene D protein (GPD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.3   3.4   2.1e-71   6.3e-68       2     301 ..      35     355 ..      34     357 .. 0.94
   2 ?   -3.6   0.0       1.7   5.1e+03     200     214 ..     756     777 ..     752     815 .. 0.51

  Alignments for each domain:
  == domain 1  score: 229.3 bits;  conditional E-value: 2.1e-71
   Phage_GPD   2 eglselfefeldllssdadldlkallgqpvtvsield....dgskrvihGlvteaeqvgadgrlarYrltlrPwlwlltlr.rdsriFqnktvpdIlea 95 
                 e+lsel+ ++++++s+++++d+++ll +p+ ++++ +     +   ++hG++t +++v++++++++Y++tl+P l+ll+++ r +r F nk+vp+++e+
  CTQ28702.1  35 EKLSELYYYTITFTSAEKNIDAAQLLSKPAMLTMGGGalqqLADCKRVHGVITTFRRVNRSEDQSTYQITLQPFLSLLDKQfRSHRFFVNKSVPEVVEQ 133
                 89********************************9889988778899**************************************************** PP

   Phage_GPD  96 vlaeh.giavekrfrlersypkreycvQyrESdlaFvsRLleeeGifyffeh.edg.shtLvladassalppsaggpsiryhrqsgteae.reaitrfa 190
                 vl+eh  + +e++f+l+++yp re + Qy+ESdlaF++RLl+e Gifyff+  e++ s+++++ada++al+    +++++++++sg++++ +e+i+ ++
  CTQ28702.1 134 VLQEHhLHDWEYEFNLKQHYPRREQINQYQESDLAFIQRLLAEVGIFYFFTLqEEAqSEVVHFADAQRALMF---DKTLPVNSPSGMSDSgAESIWGLS 229
                 *****99********************************************96555999**********988...9*********************** PP

   Phage_GPD 191 earrlapgkvtlrdydykkpkadlsaeaaqpr....aaasalevydypgdyask........aegerlarlrlealrararrfsgesnvrglapGrtft 277
                 ++++++ + vt+rdy+++++++ l++ +a+ +    ++ +++evy+y+ ++ ++        + ++ +arl +e++ a+++ +++ s++++lap +++t
  CTQ28702.1 230 ITHNVVEANVTTRDYNPRDAQSVLQSATADMTrgngEGITYGEVYHYKLRHRERgdkidpqtETANFYARLDHERFLAHQTLITANSTAAWLAPAQVLT 328
                 ***********************88887777778889999*******884444455566677************************************* PP

   Phage_GPD 278 lsghp...rkaaanreylitsvehhge 301
                 +++      +a +++ +lit++ ++++
  CTQ28702.1 329 VTDSLpstLPAPVQDPLLITGTGFTAS 355
                 ***88999889999*******999876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.7
   Phage_GPD 200 vtlrdydykkpkad.......l 214
                   ++dyd++kp+ +       +
  CTQ28702.1 756 MGAADYDANKPELPvgfseffT 777
                 5678999999999966655431 PP

>> DUF2345  Uncharacterized protein conserved in bacteria (DUF2345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.5   5.1   7.2e-58   2.1e-54       3     150 ..     610     758 ..     608     759 .. 0.98

  Alignments for each domain:
  == domain 1  score: 183.5 bits;  conditional E-value: 7.2e-58
     DUF2345   3 egalpelaqpllvlsapaGialttpqslqlaage.nlaltagqdtqlaagkrllaaageaislfaqkagikliAakgkveiqAqsdalellAkkdvtvt 100
                 ++al+elaqp +vl+ap+G+++++pq + l++g+ ++ ++++q+t+++a kr+++aagea+sl+a+kag+kl+Aakgk+eiqAq+dale++Akkd+tvt
  CTQ28702.1 610 NDALKELAQPGIVLNAPQGVSISSPQAVRLSSGSaSVGIVSQQNTDISALKRFTVAAGEAVSLLARKAGMKLFAAKGKIEIQAQDDALEATAKKDITVT 708
                 6899*****************************979*************************************************************** PP

     DUF2345 101 StegkieisAkkeillaaggayirleggnIelgtpGkievkaashsftGp 150
                 S+eg++ei+A++e++++++gayirl+ggnIelg+pG+i +k+a+ +++G+
  CTQ28702.1 709 SVEGRVEITAAEELVVNCAGAYIRLSGGNIELGCPGNILLKSANVQKMGA 758
                 ************************************************98 PP

>> T6SS_Vgr  Putative type VI secretion system Rhs element Vgr
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   0.6   3.8e-36   1.1e-32       3     108 .]     490     593 ..     488     593 .. 0.96

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 3.8e-36
    T6SS_Vgr   3 vk.gsgynqlvldDtegqeriqLaseh.gksqLnlGhlvdqedngrgakrGeGfeLrTdaagavRagkGlllstearakaqgkqldmeealaqleqaae 99 
                 v  ++ +n+l+++D++g+e+i+L++e+ gk+qLnlGh v+ + +   + rGeG+eLrTd+++++R+g G+++s++++++a  ++l meea+aqle+a  
  CTQ28702.1 490 VIrTPTNNKLRMEDKRGEEHIKLSTEYgGKTQLNLGHNVNAQ-R---ELRGEGAELRTDKWVSIRGGAGVFISADKQPSAGDRMLAMEEAIAQLENALG 584
                 455999*********************99***********99.4...7*************************************************** PP

    T6SS_Vgr 100 laesLsdaA 108
                 +a+sL++aA
  CTQ28702.1 585 IAKSLASAA 593
                 ******987 PP

>> Sarcoglycan_1  Sarcoglycan complex subunit protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.82   2.4e+03     171     191 ..     541     561 ..     525     576 .. 0.77
   2 ?    0.3   0.0      0.12   3.7e+02     170     205 ..     622     657 ..     610     672 .. 0.67
   3 !   12.1   0.1   3.1e-05     0.092     180     217 ..     683     730 ..     660     760 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.82
  Sarcoglycan_1 171 lesdtrlslrgnegvrieaka 191
                    l++d+ +s+rg  gv+i+a +
     CTQ28702.1 541 LRTDKWVSIRGGAGVFISADK 561
                    555566888888888888865 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.12
  Sarcoglycan_1 170 klesdtrlslrgnegvrieakageieatslkdikLk 205
                    +l++++ +s++ ++ vr+++ + ++ + s++++ ++
     CTQ28702.1 622 VLNAPQGVSISSPQAVRLSSGSASVGIVSQQNTDIS 657
                    455666666666677777666666666666666655 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 3.1e-05
  Sarcoglycan_1 180 rgnegvrieakageieatslkdikLkssnGsivLdak..........g 217
                     ++ +++i+a++  +eat++kdi+  s +G++ ++a            
     CTQ28702.1 683 AAKGKIEIQAQDDALEATAKKDITVTSVEGRVEITAAeelvvncagaY 730
                    355569****************************99865555555552 PP

>> Cthe_2159  Carbohydrate-binding domain-containing protein Cthe_2159
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.8   8.2e-05      0.25     108     198 ..     645     739 ..     623     765 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.2e-05
   Cthe_2159 108 knGikskddLkits.gtlnvtA.vddgi...kgkdsleikdgtltitaggdgiksendedeekGyvtingGtititsaddgiq..aetsltinggtlt 198
                 + Gi+s+ +  i+    ++v A +   +   k+  +l  ++g+++i+a++d+++++ ++d +   vt  +G ++it+a++ +   a  ++ ++gg+++
  CTQ28702.1 645 SVGIVSQQNTDISAlKRFTVAAgEAVSLlarKAGMKLFAAKGKIEIQAQDDALEATAKKDIT---VTSVEGRVEITAAEELVVncAGAYIRLSGGNIE 739
                 55666666666666334555554333331112333456679999999999999999877764...444456777776555443113455556666655 PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.6   0.00019      0.56      22      51 ..     566     595 ..     559     598 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00019
  Sugarporin_N  22 aaasltiEaRLaaLEkrLqeAeqraqaAea 51 
                    + +l+ E+ +a+LE +L  A++ a+aAe+
    CTQ28702.1 566 GDRMLAMEEAIAQLENALGIAKSLASAAES 595
                   5679************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (828 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 6020.78
//
Query:       CTQ28703.1  [L=565]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-19   68.4   0.0      1e-18   67.5   0.0    1.5  1  OmpA      OmpA family
  ------ inclusion threshold ------
       0.51    9.6   4.6       0.45    9.8   1.0    2.1  2  UbiA      UbiA prenyltransferase family
        2.1    8.0   5.6        1.6    8.3   3.0    2.1  2  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   1.7e-22     1e-18       1      95 []     435     531 ..     435     531 .. 0.93

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 1.7e-22
                 .B-TTS--B-GGGHHHHHHHHHHHH.S-S--EEEEE---S---HHHHHHHHHHHHHHHHHHHHH.TTSSGGGEEEEE-TT--------------EE. CS
        OmpA   1 yFapgsseLtpkaksaldkiaellk.kpeqkitveGhtdaagseernweLSqkRAeaVanylqn.egvppsrisvsgyGaerpitanntaekkarnr 95 
                 +F++g+s L+p + + l      +k kp   i+v Ghtd+ g++++n++LS kRAeaV++++ +   vp+s + v+gyGa+rp+++n+t+e++a+nr
  CTQ28703.1 435 LFDTGKSALKPGSTKLLVNSLLGIKaKPGWLIVVAGHTDSIGNDRSNQQLSLKRAEAVRDWMRDtGDVPESCFAVQGYGASRPVASNETPEGRAQNR 531
                 5**************9998888888677777*********************************555****************************98 PP

>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.0   7.5e-05      0.45     187     238 ..       4      58 ..       1      64 [. 0.61
   2 ?    0.8   0.1     0.041   2.5e+02      31      90 ..     258     336 ..     239     343 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 7.5e-05
        UbiA 187 aarillalllavllla..llllllalllllylllalllaalallr.aarlvrrrd 238
                 +ar+ll++l+++l l+  l++++l   + +++ l++lla+ a l+ + r+  +r+
  CTQ28703.1   4 NARRLLTILTVILALWlvLGFWPLSIGNQVIFSLCILLAGGAALWrQRRRAVSRQ 58 
                 4566644444444444558888888899998888888776665550444444444 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.041
        UbiA  31 laaaaanalNdyfDreiDadme....................rtpnRPlvsGrispkealifaivllilgllllalllnp 90 
                 +++  a + N+++  +i a++                       p+R+ vs+r+   ++l +++ +l+l+l++la ++n 
  CTQ28703.1 258 CLTPVAAVANNLWQQQIAAITTlspgndaapgphplpdlllsSLPHRHGVSRRMR-DAGLSAGVGFLFLALAMLASFINN 336
                 4455555556666555555555555555555555555555544477777777777.666777777777777777677665 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.0   0.00027       1.6       9      62 ..      11      61 ..       5      78 .. 0.70
   2 ?   -1.3   0.0      0.25   1.5e+03       9      23 ..     320     334 ..     296     371 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00027
     DUF4131  9 llalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsql 62
                +l ++l+l l+l+++     +    ++++l++lla++ +++r++++++++  + 
  CTQ28703.1 11 ILTVILALWLVLGFW---PLSIGNQVIFSLCILLAGGAALWRQRRRAVSRQRSE 61
                444555555555555...34555699*******************999776655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.25
     DUF4131   9 llallllllllllll 23 
                 + +l+l+l++l+ ++
  CTQ28703.1 320 VGFLFLALAMLASFI 334
                 222333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4331.36
//
Query:       CTQ28704.1  [L=217]
Description: DotU family type IV/VI secretion system protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-40  138.6   2.5    2.8e-40  138.3   2.5    1.0  1  DotU      Type VI secretion system protein DotU
  ------ inclusion threshold ------
      0.023   14.1   1.0      0.035   13.5   1.0    1.3  1  SfLAP     Sap, sulfolipid-1-addressing protein
       0.33   11.7   2.9          2    9.2   0.0    2.8  3  DUF2849   Protein of unknown function (DUF2849)


Domain annotation for each model (and alignments):
>> DotU  Type VI secretion system protein DotU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   2.5   4.6e-44   2.8e-40       5     203 ..      12     203 ..       9     205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 4.6e-44
        DotU   5 aarpllllvarlresasepdvealrerlveelrafeqrlkaagysaediedaryalcaliDEavlntpwgers..eWarepLqvrffnetqgGekffer 101
                  + p +l+v +lr ++   d eal+++  +++++++++l a g+s++++e++ ya+cal+DE+vln + +      W++ pLq+rff + ++Ge+++er
  CTQ28704.1  12 TFYPGWLMVSQLRCGQPVTDGEALYRQACRWVTEAREALTAGGVSEASAEQMLYAYCALLDESVLNRASQDDGyrRWRKDPLQARFFSTLNAGEELWER 110
                 6899*********9999************************************************99965444669*********************** PP

        DotU 102 lerlledpaenldlLevyylcLaLGFeGryrleadgeeelealrqrlyeeirrlrgeaeealsphwqagdeaarrllrrelp.lwvilalallvllllf 199
                 +++ll++p++++++L+++++ L LGF G+yr e+d  e++e++ q+l +++          +s  ++a+++ + ++lr+  +  w  +a+ +++l++l+
  CTQ28704.1 111 IRQLLREPTADAAVLTCFFRTLQLGFVGQYRAEDD--ERREDVAQALGARVP--------PFSLTQEAPVVVRASRLRSGRRmYWCGWAAGIVALAALW 199
                 *******************************9976..58*************........567777777888888886654547999999999999999 PP

        DotU 200 lgls 203
                 l++s
  CTQ28704.1 200 LTFS 203
                 9886 PP

>> SfLAP  Sap, sulfolipid-1-addressing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.0   5.9e-06     0.035       5      58 ..     154     208 ..     151     216 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.9e-06
       SfLAP   5 AlvvalsPlrlgvavlllsr.prpvlnllaFlvgwlvvlvalglivlfvlrslls 58 
                 Al++ + P++l+    ++ r +r ++   ++++gw++++val+++ l++++ l++
  CTQ28704.1 154 ALGARVPPFSLTQEAPVVVRaSRLRSGRRMYWCGWAAGIVALAALWLTFSSVLSQ 208
                 66777777777765555544499999999*******************9988775 PP

>> DUF2849  Protein of unknown function (DUF2849)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00033         2       8      40 ..      29      60 ..      25      78 .. 0.77
   2 ?   -2.4   0.0       1.3   7.7e+03      21      34 ..      87     100 ..      83     120 .. 0.58
   3 ?    1.8   0.3     0.065   3.9e+02       2      17 ..     171     186 ..     170     201 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00033
     DUF2849  8 LldGevvyltadgkWsedlaeAavl..eeadeala 40
                 +dGe+ y++a   W+++ +eA ++      ea a
  CTQ28704.1 29 VTDGEALYRQACR-WVTEAREALTAggV--SEASA 60
                68*******7766.*********99542..33332 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
     DUF2849  21 kWsedlaeAavlee 34 
                 +W +d  +A+ +++
  CTQ28704.1  87 RWRKDPLQARFFST 100
                 56666666666622 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.065
     DUF2849   2 vvTAnrLldGevvylt 17 
                 vv A rL++G+  y+ 
  CTQ28704.1 171 VVRASRLRSGRRMYWC 186
                 899*********9994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1600.95
//
Query:       CTQ28705.1  [L=446]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-133  445.9   7.3   1.4e-133  445.7   7.3    1.0  1  T6SS_VasE  Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ,


Domain annotation for each model (and alignments):
>> T6SS_VasE  Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  445.7   7.3  7.8e-138  1.4e-133       1     428 []      18     443 ..      18     443 .. 0.98

  Alignments for each domain:
  == domain 1  score: 445.7 bits;  conditional E-value: 7.8e-138
   T6SS_VasE   1 HFQqqdrylehllrerlralspyaWGvseleldeeaLalgklalesasgifpDGtlfdapendplPeplelpeeeetknltvyLalplrragganvsee 99 
                 +FQqq r+ +h ++++ r++ +++WGv ++e+d++aL+l +l+ +++ ++f DGtl+d++ +d lP+++++++   +++++v+Lalpl +a+g+n++ +
  CTQ28705.1  18 QFQQQARWDAHVADTVSRMALAHPWGVLRAEFDASALTLSRLNATRLIVRFADGTLIDTELADILPPVRDVSD-VMQDSVEVLLALPLLSASGGNLD-D 114
                 6************************************************************************.479********************.5 PP

   T6SS_VasE 100 eesaaaaaRyraeeeevrDlnsegqeeaevqlarlnlrLllesedtgdylllpvarikedrdgkveldesFiPpclslsaspllksllrellgllkara 198
                  +++a+ +R+rae+++v+ l   g e++e++++r++l+L+l++e+++++l++pvar+++d++g++++d++FiPp+lsl+asp+l s l ell++l+ar 
  CTQ28705.1 115 GQESARPRRWRAEQVTVQELA--GHERSELAVLRHALTLRLSTEENAAFLTCPVARLVRDAQGQWIVDPEFIPPLLSLAASPTLVSELGELLHRLQARR 211
                 5555578**************..77779*********************************************************************** PP

   T6SS_VasE 199 eala..krerasqgagfgvadvadfllLqllnraepllrhlleapklhPerlYeellelaGeLstFseesrrprelpaYdHddlaasFapleaelrelL 295
                 ++l+  +re++ ++a+f+vadv+ f+lL++ln+aep+l++l + p+ hPe lY+el++laG+L+tFs e ++++++p Y+H  + ++F pl+a+l +lL
  CTQ28705.1 212 RRLMamRRESNARMADFAVADVSLFWLLNALNSAEPVLSELHQDPSRHPELLYRELARLAGSLLTFSLE-HHLEAIPRYRHASPVQVFPPLFALLDTLL 309
                 *********************************************************************.99*************************** PP

   T6SS_VasE 296 savleqravaiple.erkdglyvarldderlleearfvLaVradlpaeelrerfpaqaKvgsvekirelvnsalpGiplrplpvaPrqipyragyvYFe 393
                 +++l++r++ai le + +++++++rl+d+rl+e+a+f+L+Vr++lp+++l++rfp+++K gs +++ e+vn al+Gi+++pl+++P++ip+r +++YF+
  CTQ28705.1 310 EVSLPSRVIAIALEqSADREIWRGRLHDARLREGADFYLSVRSSLPPHQLQSRFPQLCKAGSHDDVAEVVNIALSGIAIKPLSHVPAAIPLRLENQYFA 408
                 **************455669******************************************************************************* PP

   T6SS_VasE 394 Ldkkgelwkqllksgaialhvpgefpdlelelwav 428
                 Ld + ++ +++l++g++ ++ p+++ d++lel+av
  CTQ28705.1 409 LDLSTDAARAMLEAGNCTFYTPESLGDVKLELFAV 443
                 *********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3628.16
//
Query:       CTQ28706.1  [L=109]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-16   60.5   0.0    2.6e-16   60.3   0.0    1.0  1  GGACT     Gamma-glutamyl cyclotransferase, AIG2-like
  ------ inclusion threshold ------
      0.021   15.2   0.0      0.025   14.9   0.0    1.2  1  AIG2_2    AIG2-like family


Domain annotation for each model (and alignments):
>> GGACT  Gamma-glutamyl cyclotransferase, AIG2-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   2.8e-20   2.6e-16       1     104 [.       4     106 ..       4     109 .] 0.82

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 2.8e-20
                 EEESSTTSTTSCCCHHHHCSECEEEEEEEECCTBEEEE...ET..TTEEEE.TTSSE.EEEEEEEE-H..HHHHHHHHCT.TTTTSEEEEEEEEEC.TT CS
       GGACT   1 vFvYGtLkrgepnhqrlllgarflesgpatlkgyrlyd..lgg..kypalv.pgdgekVkGelyevdd..eelarLDelEpeepseYereevkvevled 92 
                 +FvYGtL +g +n + +l +    e +p +++g + y+  +g+  ++p++v + +g +V+G+l+  d   ++++ LD++E    + Y+r++v+v++ +d
  CTQ28706.1   4 LFVYGTLCPGRSNAH-ILEA-IGGEWRPGYVTG-TFYArgWGAaaDFPGIVlDAHGPRVNGYLFLSDRlaAHWPMLDDFE----EGYDRVPVEVTT-DD 94 
                 7*************9.6633.344678888888.7777673323599****888899********9889888********....99****777766.** PP

                 S-EEEEEEEEET CS
       GGACT  93 geqveawvYvya 104
                 g+q++aw+Y  +
  CTQ28706.1  95 GQQISAWIYQLQ 106
                 *********885 PP

>> AIG2_2  AIG2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.8e-06     0.025      12      52 ..      71     107 ..      58     109 .] 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.8e-06
      AIG2_2  12 enlkdLDkqEgvedgiyrpievrVstatgeevlaraYvlsn 52 
                 ++++ LD+ E+     y ++ v+V+t +g++++a++Y+l++
  CTQ28706.1  71 AHWPMLDDFEE----GYDRVPVEVTTDDGQQISAWIYQLQP 107
                 56778888887....8**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 821.61
//
Query:       CTQ28707.1  [L=210]
Description: nucleoprotein/polynucleotide-associated enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-59  199.7  12.0    4.6e-59  199.5  12.0    1.0  1  DUF2058       Uncharacterized protein conserved in bacteria (
  ------ inclusion threshold ------
      0.052   12.3   2.8      0.053   12.3   2.8    1.1  1  Dynactin_p62  Dynactin p62 family
       0.18   11.4   2.0       0.28   10.8   2.0    1.3  1  DUF2229       CoA enzyme activase uncharacterised domain (DUF
        1.9    8.2   9.3        3.4    7.4   9.3    1.4  1  EMC3_TMCO1    Integral membrane protein EMC3/TMCO1-like


Domain annotation for each model (and alignments):
>> DUF2058  Uncharacterized protein conserved in bacteria (DUF2058)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.5  12.0     1e-62   4.6e-59       1     174 []      36     210 .]      36     210 .] 0.99

  Alignments for each domain:
  == domain 1  score: 199.5 bits;  conditional E-value: 1e-62
     DUF2058   1 sLqeQLlkaGLvdkkkakkakkekrkqkkqkkkgaadeakeaaeeakaekaerdrelneqrkeeaekkalkaqirqlieenrlkkkegeiaynFtdgkk 99 
                 +LqeQ+lkaGLv++kk++k++++++k++ q+++     a+ea+ee+k++++erd++l+eq+k++  +k++kaq++qlie+nr++ ++g+i +nFtd++ 
  CTQ28707.1  36 TLQEQMLKAGLVSSKKMAKVQRTAKKSRVQARE-----AREAVEENKKAQLERDKQLSEQQKQAVLAKEYKAQVKQLIEMNRITVARGDIGFNFTDNNL 129
                 59***************************9977.....99*********************************************************** PP

     DUF2058 100 vkklyvdeklqkqLvkGrlaivrl......eeeyelvpaevaekiaerdeevvvllnekeeeekdeddpYadyqiPDDLmW 174
                 +kk++vd+ +q+qL++Grlai+rl      e+ey+++pa vaekia+rd++ +vl+++ +++e+deddpYad+++PDDLmW
  CTQ28707.1 130 IKKIMVDKPTQTQLINGRLAIARLavdnkpEGEYAIIPAVVAEKIAQRDASSIVLHSALSQDEQDEDDPYADFKVPDDLMW 210
                 ************************9999999************************************************** PP

>> Dynactin_p62  Dynactin p62 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.8   1.2e-05     0.053     127     214 ..      48     134 ..      23     208 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.2e-05
  Dynactin_p62 127 takersklkerrkeaessseeeaeeeeseeedetale.dsdekldaearfanLkaFYksqlaeassasaelsaled..lgfsspsalsRim 214
                   ++k++  +k +r  ++++s+ +a+e+ +  e++++++ ++d++l+++++ a L   Yk+q+++  ++++ ++a +d   +f+  + +++im
    CTQ28707.1  48 SSKKM--AKVQR--TAKKSRVQAREAREAVEENKKAQlERDKQLSEQQKQAVLAKEYKAQVKQLIEMNRITVARGDigFNFTDNNLIKKIM 134
                   22222..22222..222222233333333333344445899**********************9988888888888334455556666776 PP

>> DUF2229  CoA enzyme activase uncharacterised domain (DUF2229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.0   6.1e-05      0.28     117     185 ..      46     100 ..       9     120 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.1e-05
     DUF2229 117 vldledkkelakqlleelgiskkeikkAvekAleaqkafkeelrkkgeelleeleeegkkgivllGrpY 185
                 +++ +++++ +++  ++ +++ +e+++Ave+  +aq + +++l +++++++              +++Y
  CTQ28707.1  46 LVSSKKMAK-VQRTAKKSRVQAREAREAVEENKKAQLERDKQLSEQQKQAVL-------------AKEY 100
                 222222222.222333557777777777777777777777777666665544.............3333 PP

>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   9.3   0.00076       3.4      32      96 ..      40     104 ..      34     116 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00076
  EMC3_TMCO1  32 ellqkllidkkkmekeqkrekelqkrarelqkngdklklkklekrqeelmedqsemmmdqmkpmi 96 
                 ++l+  l+  kkm k+q++ k+   +are+++  +++k+++le+ ++   ++++ ++ +  k ++
  CTQ28707.1  40 QMLKAGLVSSKKMAKVQRTAKKSRVQAREAREAVEENKKAQLERDKQLSEQQKQAVLAKEYKAQV 104
                 68889999************************999999999998887777777666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3121  (0.174076); expected 358.6 (0.02)
Passed bias filter:                      929  (0.0518155); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1453.73
//
Query:       CTQ28708.1  [L=232]
Description: Ribosomal large subunit pseudouridine synthase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-26   92.8   0.0    3.2e-26   92.3   0.0    1.2  1  PseudoU_synth_2  RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   1.8e-30   3.2e-26       1     159 [.      25     180 ..      25     181 .. 0.91

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 1.8e-30
  PseudoU_synth_2   1 dlvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeega 94 
                      +lv++nKPag+ + +++     + + +     r  +    + lvhRLD +tsGl+++A+++ + + l ++f++r+v K+Y al+ g+  e+eg+
       CTQ28708.1  25 HLVLINKPAGLLSLSGK-----DPRNLDSVHHRLVQRFPGCTLVHRLDFGTSGLMVIARNKGINALLCQQFSQRTVDKVYTALLCGHLAEDEGI 113
                      689**********9999.....55555555555667777899**************************************************** PP

  PseudoU_synth_2  95 ikkkiskdtekqegarrkaeeldgkkavtylkvlksgs....seksakvslveleletGrkhQiRvhla 159
                      +++ i k  + +  +r+    ++gk a+++++v+++ +     e+  + + v l++etGr+hQ+R+h++
       CTQ28708.1 114 VEAAIAK--DPARFPRMALCARHGKPARSRYRVIDRLYqareGERALALTRVTLTPETGRTHQLRIHCQ 180
                      *******..899999***********************8887777888899*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1747.74
//
Query:       CTQ28709.1  [L=160]
Description: putative cold-shock protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-09   35.8   0.1      8e-09   35.2   0.1    1.3  1  CSD       'Cold-shock' DNA-binding domain


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.1   4.5e-13     8e-09       2      65 ..       4      64 ..       3      65 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 4.5e-13
                EEEEE.EEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEEE CS
         CSD  2 tGtVk.wfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVtk 65
                +Gt+  wf++ kgfGFI++e+g+ + ++Hv ++ + +   ++++ +V+Fe + ++kg +A+ V+ 
  CTQ28709.1  4 NGTITtWFKD-KGFGFIKDENGE-NRYFHVIKVANPD--LIKKDAAVTFEPTTNNKGLSAYAVKV 64
                6777527777.************.6688999999888..89********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1306.43
//
Query:       CTQ28710.1  [L=299]
Description: LysR family transcriptional regulator YbhD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-43  146.3   0.7    9.5e-43  146.0   0.7    1.1  1  LysR_substrate  LysR substrate binding domain
    1.1e-19   70.1   0.2    2.5e-19   69.0   0.2    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    3.7e-05   22.9   0.0     0.0018   17.4   0.0    2.4  2  PBP_like        PBP superfamily domain
    0.00074   19.1   0.3     0.0028   17.2   0.0    2.1  3  HTH_50          Helix-turn-helix domain
  ------ inclusion threshold ------
       0.08   12.7   0.6       0.21   11.4   0.3    1.9  2  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   0.7   2.7e-46   9.5e-43       3     206 ..      92     294 ..      90     297 .. 0.96

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 2.7e-46
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvs 97 
                       +g ++++++p++a y++p+++++f+aryP+v+++l  ++  ++++++ +g++D+++++    ++++e++pLa++++v+++++dhpLar++ +s
      CTQ28710.1  92 ARTGLVTVATVPSAAYYFMPEIIRSFQARYPQVRIRLIDSSVGNVIEAVSSGQADFGLCFAKNLPASIEFTPLADDRYVAACRHDHPLARKTHLS 186
                     56899****************************************************************************************** PP

                     GGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCC CS
  LysR_substrate  98 ledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgre 192
                     +++  +++ i l++ sg+r ll++ l++   ++   +e+ ++ ++l++v+aG+Gia +p++ + ++ ++  l+a+pl +p ++r+++l++ +gr 
      CTQ28710.1 187 WQAYFEQDYIGLDRVSGNRTLLDRELAHLTPARPSICETRHVTTMLGMVEAGIGIAAVPAMSM-PAGEHSVLRAVPLTDPVVTRTVGLIRLSGRI 280
                     *****************************9999999**************************9.88*************9999***********9 PP

                     CHHHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidflre 206
                     +s  ++ +  ++ e
      CTQ28710.1 281 QSYVAAELEKLIIE 294
                     88888777666655 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.2   6.9e-23   2.5e-19       1      60 []       7      66 ..       7      66 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 6.9e-23
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                +++l +f a++e gsf+ AAe   lsq+a+sr+i +LE +lg +Lf+Rt+r+++LT +G+
  CTQ28710.1  7 FNDLYAFRALMEYGSFRLAAESICLSQSALSRRIEKLETALGNRLFDRTTRRVTLTLYGQ 66
                689*****************************************************9997 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.1e-07    0.0018     132     178 ..     132     176 ..     114     183 .. 0.90
   2 ?    2.3   0.0     0.022        78     103     166 ..     202     262 ..     195     271 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.1e-07
                 SHHHHHCCHCCETTCCECCCGG-HCCCCCCECTTCE-EEEEEEEECT CS
    PBP_like 132 shlavaaaVaagradvgvgieavaeelkgldfvplaeerydlvvrke 178
                 s ++v +aV++g+ad g+++++    + +++f+pla+ ry  ++r +
  CTQ28710.1 132 SVGNVIEAVSSGQADFGLCFAKNLP-A-SIEFTPLADDRYVAACRHD 176
                 56799***************99995.6.9***********9998876 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.022
                 SHHHHHHHHHHC-CEECTE-SSTTSEEESSHHHHHCCHCCETTCCEC.CCGG-HCCCCCCECTTC CS
    PBP_like 103 SGtrdlfdellkkegiskssikgyaqearshlavaaaVaagradvgv.gieavaeelkgldfvpl 166
                 SG r l+d++l+   + +++++    e r   ++  +V+ag + ++v +++  a e   l  vpl
  CTQ28710.1 202 SGNRTLLDRELAH--LTPARPSIC--ETRHVTTMLGMVEAGIGIAAVpAMSMPAGEHSVLRAVPL 262
                 9**********66..577777764..556667778888888777776566655555555555555 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   7.9e-07    0.0028      18      46 ..      14      42 ..      12      44 .. 0.92
   2 ?   -3.7   0.0       2.6   9.4e+03      14      27 ..     112     125 ..     111     125 .. 0.79
   3 ?   -3.0   0.0       1.7     6e+03      13      25 ..     290     298 ..     284     298 .. 0.54

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7.9e-07
      HTH_50 18 kayekYpStRklAkrLGvShtaianklrk 46
                +a+ +Y+S+R++A+   +S++a  +++ k
  CTQ28710.1 14 RALMEYGSFRLAAESICLSQSALSRRIEK 42
                6899********************99876 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.6
      HTH_50  14 elikkayekYpStR 27 
                 e+i ++ ++Yp +R
  CTQ28710.1 112 EIIRSFQARYPQVR 125
                 57889999999766 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.7
      HTH_50  13 relikkayekYpS 25 
                 + +i    e+YpS
  CTQ28710.1 290 KLII----EQYPS 298
                 4444....55555 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3     6e-05      0.21      13      55 ..      20      63 ..      12      66 .. 0.82
   2 ?   -1.4   0.0      0.57   2.1e+03      12      30 ..      65      83 ..      59      90 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6e-05
                T-HHHHHHHHTS-HHHHHHHHHHHHHHHS--.TTSHHHHHHHHH CS
      HTH_30 13 gnisatAkaLhvHrnTlryRLrrieellgld.lddpddrlaLyl 55
                g+ + +A++  ++   l+ R++++e  lg   +d++ +r++L l
  CTQ28710.1 20 GSFRLAAESICLSQSALSRRIEKLETALGNRlFDRTTRRVTLTL 63
                88899************************662566777777765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.57
                TT-HHHHHHHHTS-HHHHH CS
      HTH_30 12 ggnisatAkaLhvHrnTlr 30
                g+n ++ +++L  H+ T+ 
  CTQ28710.1 65 GQNFAERSEQLLAHVETVL 83
                6788888899999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2426.66
//
Query:       CTQ28711.1  [L=269]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-39  136.2   2.1    1.7e-39  135.9   2.1    1.0  1  SBP_bac_11  Bacterial extracellular solute-binding protein
    0.00019   21.5   0.0       0.34   10.8   0.0    2.2  2  SBP_bac_1   Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   2.1   1.9e-43   1.7e-39       1     230 []      27     254 ..      27     254 .. 0.94

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 1.9e-43
                 .EEEE-SSTHHHHHHHHHHHHHHH---EEEEESSH.....HHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGGGG-EEEEEEEEEEEESTT-TT.-- CS
  SBP_bac_11   1 ltvaaagslaaalrelaaaFeahtgvkvevsaggs.....gklarqiadgarpDvwipassawlellaaaglvqaesavplassplviavpkgnpk.ki 93 
                 +tv+ +g+++aal+ la+a+e++tg +++v  g+s     +++ +++a+g+++Dv+i+   ++l++l++ag++q++s++ la sp+ ++v++g+p   i
  CTQ28711.1  27 VTVMISGGFKAALEKLAPAWEKQTGNHLVVIPGPSmgktpQAIPNRLARGEHADVVIMVG-DALTSLEKAGRTQPDSRRELADSPIGVVVKAGAPLpAI 124
                 59*********************************966666666777************8.799*******************************9789 PP

                 -SHHHHHHSS-...-EEEE--T-TTTTHH.H.HHHGGG--HHHHHHHHHTEEEEESSHHHHHHHHHTTT-SEEEEEHHHHH..HSTTSSEEE.E--TTT CS
  SBP_bac_11  94 kgwadLlkpgl...klavadPttspsGlaal.alleaagaqellkalekkvvklgessrqlltaveageadagivyeseakaaengdkleav.ylpegl 187
                 ++ ++L++  l   ++a++d   s+sG+++  +l++ +g   +++a+++k++ ++e   +++++v+ g++++g+++ se++   + +++++v +lp++l
  CTQ28711.1 125 HNADQLRATLLaapSVAYSD---SASGRYVSsTLFHTLG---IDDAMQSKAQ-MVER-IPVASEVAKGRYAIGFQQVSELL---PVPGVTFVgELPDNL 212
                 999999999888889*****...999998886899999*...*********8.7775.78*********************...9************** PP

                 --...EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT-B CS
  SBP_bac_11 188 nldpldypaavlkkaakreaAraFlafLrspeaqailrkyGfr 230
                 +   + ++ av+ +a+++++ +a+l++L+sp+aq+++++ G+r
  CTQ28711.1 213 QY-ITRFAGAVTISADHPQEGKALLTYLASPAAQETIHATGMR 254
                 *8.89************************************98 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   3.8e-05      0.34       6      73 ..      37     100 ..      32     118 .. 0.86
   2 !    8.8   0.0   0.00015       1.4     289     315 .]     220     246 ..     181     246 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHHHHHHHHTTEEEEEEEE.CHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBEC CS
   SBP_bac_1   6 egaalqalvakafekehpgikVeiesv.gsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllp 73 
                 +  al++l+  a+ek  +g   +++++ + g   q++  ++a G   aDv+++ +d ++ l kag  +p
  CTQ28711.1  37 A--ALEKLA-PAWEK-QTGNHLVVIPGpSMGKTPQAIPNRLARGE-HADVVIMVGDALTSLEKAGRTQP 100
                 4..899999.99***.79*9999999856666666**********.77*****9999999999988776 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00015
                 EEEBTTCSTHHHHHHHHHHHTSHHHHH CS
   SBP_bac_1 289 laipkgsknpeaAkkFldfllspeaqa 315
                  a+  ++++p++ k++l++l+sp+aq+
  CTQ28711.1 220 GAVTISADHPQEGKALLTYLASPAAQE 246
                 57777899*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 2089.69
//
Query:       CTQ28712.1  [L=431]
Description: citrate-proton symporter (MFS superfamily) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-33  114.1  37.6    7.3e-24   84.4  11.2    2.0  2  Sugar_tr   Sugar (and other) transporter
    1.2e-30  106.6  82.8    1.6e-24   86.5  51.5    2.0  2  MFS_1      Major Facilitator Superfamily
  ------ inclusion threshold ------
        0.2   11.6   3.6       0.45   10.6   0.2    3.4  2  PGF-CTERM  PGF-CTERM motif


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4  11.2   1.2e-27   7.3e-24       6     202 ..      21     222 ..      16     232 .. 0.91
   2 !   35.8  19.0   6.8e-13   4.1e-09     242     434 ..     226     420 ..     218     423 .. 0.73

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 1.2e-27
                 HHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT..... CS
    Sugar_tr   6 alggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk..... 99 
                 + g +l+ +d+++ g+++t ++ +++f +s++ +s     + + +++++ ++ + iG++++g  +d++GR+k+l+++  ++  g++l+++++++     
  CTQ28712.1  21 TSGNFLEQFDFFLFGFYATYIA-HTFFPASSEFASL----MMTFAVFGAGFLMRPIGAIVLGAYIDKVGRRKGLIVTLSIMATGTFLIVLIPSYqtigl 114
                 4455*****************9.6666666655545....5689999999******************************************999**99 PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.....TTHHHHHHHCCHHHHHHHHHHGGGS-- CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn.....adgwrillglqlvpallllilllflPE 193
                 ++  ++++gR+l G+++G++ + v++y++EiA++   g+ +s++  + ++ i+vaa +g++ln + +     ++gwri++ + +++  +++il+  l+E
  CTQ28712.1 115 WAPLLVLIGRLLQGFSAGAELGGVSVYLAEIATPGRKGFYTSWQSGSQQVAIMVAAAMGFALNAVLEpsaisDWGWRIPFLFGCLIVPFIFILRRKLEE 213
                 **************************************************************999999************99999999*********** PP

                 -HHHHHHTT CS
    Sugar_tr 194 SPrylvekg 202
                 +  ++  + 
  CTQ28712.1 214 TQEFTARRH 222
                 *99987655 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 6.8e-13
                 HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH.. CS
    Sugar_tr 242 wkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgiv 337
                 +++++ +    ++++i+ +++++   t    i+ y+pt+ +++ +      llvt++v + nf+   v+  l+drfGRR +l + ++  a++++  +  
  CTQ28712.1 226 MRQVFATLLANWQVVIAGMMMVAMTTTAFYLITVYAPTFGKKVLMLSAsdsLLVTLLVAISNFFWLPVGGALSDRFGRRSVL-IAMTLLALATAWPA-- 321
                 55666665567899999999999999****************988665577****************************655.55555555555555.. PP

                 HHHHTTSS...CHHHHHHHHHHHHH.HHTTTTHHHHHHHHHHSHTTTHHHHHHHHHH....HHHHHHHHHH.HHHHHHHCHHHT-HHHHHHHHHHHHHH CS
    Sugar_tr 338 alllvakskaasivaivfialfial.falgwgpvpwvlvsElfpqsvRskalaiava....vnwlanflis.llfpiiteaigggyvflvfaglavlfi 430
                   +l ++    s++++  ++l++ + +++  g  +   ++E+ p +vR ++ ++a+     v   ++ +is  l+ ++ ++ + gy   + a++ +l++
  CTQ28712.1 322 LTMLANAP---SFLMMLSVLLWLSFiYGMYNGA-MIPALTEIMPAEVRVAGFSLAYSlataVFGGFTPVIStALIEYTGDKASPGYWMSFAAICGLLAT 416
                 44444444...99****9999997625555555.55778*********888777664100033333333331345555555558999999999999999 PP

                 HHHH CS
    Sugar_tr 431 ifvf 434
                  + +
  CTQ28712.1 417 CYLY 420
                 9877 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5  51.5   2.6e-28   1.6e-24       3     337 ..      22     368 ..      20     371 .. 0.74
   2 !   34.0  23.3   2.5e-12   1.5e-08      37     174 ..     278     422 ..     276     430 .. 0.79

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 2.6e-28
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyal.ga.....avaslplGrlsdrfGrrrvlllglllfalglllllfa.....sslw.l.. 87 
                  + fl  ++++++g+ ++ ++a+++  + se+  l+ ++a+ ga      +++++lG+ +d++Grr+ l+++l ++a g++l++++     ++lw +  
  CTQ28712.1  22 SGNFLEQFDFFLFGFYAT-YIAHTFFPASSEFASLMMTFAVfGAgflmrPIGAIVLGAYIDKVGRRKGLIVTLSIMATGTFLIVLIpsyqtIGLWaPll 119
                 5789999***********.9999988777775554444444133556668999999999********************44444332454555664455 PP

       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg........Wravfyilaivsllafvlfllllpeeppe 178
                 +l++r+lqG+ aga + ++ +++a+++++ ++g+++++ s++ +++++++++ g +l + l         Wr +f++ +++  + f+   l  +++  e
  CTQ28712.1 120 VLIGRLLQGFSAGAELGGVSVYLAEIATPGRKGFYTSWQSGSQQVAIMVAAAMGFALNAVLEpsaisdwgWRIPFLFGCLIVPFIFI---L--RRKLEE 213
                 8999*************************************8888888887777766655555555555599999998888888766...3..333333 PP

       MFS_1 179 rkrkspkeeekgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrr 276
                  + ++ ++      + ++++++  ll++ ++  + ++++++++++f++++++ p++ ++vl ls +  ++l+  l+a+ +++  +++g+lsdr+grr  
  CTQ28712.1 214 TQEFTARR-----HHLAMRQVFATLLANWQVViAGMMMVAMTTTAFYLITVYAPTFGKKVLMLS-ASDSLLVTLLVAISNFFWLPVGGALSDRFGRRSV 306
                 33333333.....35566666667777776634344444444459999****************.8999999***********************9877 PP

       MFS_1 277 lllallllllaalglallavt.ssavllllvlvliGfglgfvfpsllalasdlappeeagta 337
                 l+ + ll+l++a   + + +   s +++l vl+ ++f +g+++++++ ++++ +p+e + + 
  CTQ28712.1 307 LIAMTLLALATAWPALTMLANaPSFLMMLSVLLWLSFIYGMYNGAMIPALTEIMPAEVRVAG 368
                 77666665555554444444413444444477779*******************99877655 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 2.5e-12
       MFS_1  37 lltl.yalgaavaslplGrlsdrfGrrrvlllglllfalglllll.f.a.sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa.g 129
                 l+tl +a+  ++  +++G+lsdrfGrr+vl+++ ll +++++ +l + a ++++ ++l + +  ++ +g+++ a++ +++++ p e r  +++l+++ +
  CTQ28712.1 278 LVTLlVAISNFFWLPVGGALSDRFGRRSVLIAMTLLALATAWPALtMlAnAPSFlMMLSVLLWLSFIYGMYNGAMIPALTEIMPAEVRVAGFSLAYSlA 376
                 44543888999999999***********9999999999994555564347555558888888999999*****************99999999888835 PP

       MFS_1 130 fslGailgpllggllasslg...Wravfyilaivsllafvlfllllpe 174
                 +++   ++p+++ +l+++ g    ++ ++ +a+++ l++ +   l+++
  CTQ28712.1 377 TAVFGGFTPVISTALIEYTGdkaSPGYWMSFAAICGLLATC--YLYRR 422
                 55555***************887666667777777777665..55554 PP

>> PGF-CTERM  PGF-CTERM motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.3      0.36   2.1e+03      12      21 ..      60      69 ..      59      69 .. 0.80
   2 ?   10.6   0.2   7.5e-05      0.45       9      22 ..     409     422 ..     407     423 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.36
   PGF-CTERM 12 GLLaaalLaR 21
                +  +a++L+R
  CTQ28712.1 60 AVFGAGFLMR 69
                6679999998 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 7.5e-05
   PGF-CTERM   9 AlaGLLaaalLaRR 22 
                 A++GLLa+ +L+RR
  CTQ28712.1 409 AICGLLATCYLYRR 422
                 9******99****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3041.45
//
Query:       CTQ28713.1  [L=308]
Description: Transcriptional regulatory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.9e-20   70.8   3.5    1.8e-19   69.9   3.5    1.4  1  LysR_substrate  LysR substrate binding domain
    1.2e-14   54.0   0.0    3.4e-14   52.5   0.0    1.8  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   3.5     2e-23   1.8e-19       9     206 ..     105     300 ..     103     303 .. 0.96

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 2e-23
                     EEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS...CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGG CS
  LysR_substrate   9 rigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp...edsglearpLaeeplvlvaspdhpLargepvsled 100
                      i++++ +a  ++p l+  ++++ P++++el+  + +  l  l++ge+Dla+ ++ p   ++++le   ++++++v++  ++     ++ ++l++
      CTQ28713.1 105 QIAITDFTAFCVFPTLMHHLQREAPGLRFELRYLPHSPALTELLAGEVDLALGFNTPdepAHPDLEEINWLRDEYVVISQAN-----RTALTLDA 194
                     589999*****************************9999999************************************7777.....7999**** PP

                     GCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCCHH CS
  LysR_substrate 101 LadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrelsp 195
                         +++++++ +  +  l+  l+++g +++va+++ s+ ++   +++ + +  lpr a++   ++ rl + plp p +p+++ ++ ++++  ++
      CTQ28713.1 195 YLAARHLVVTPWNERQGVLDCELERQGYSRQVAMKTPSMLSAPFIIEQSDLLMALPRRAAETMARAARLTIFPLPFPVPPFDVKIYAHQRSGKRE 289
                     ****************************************************************************8888*************** PP

                     HHHHHHHHHHH CS
  LysR_substrate 196 avrafidflre 206
                     a+r++i +l++
      CTQ28713.1 290 ATRWLISLLQT 300
                     *******9976 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   3.8e-18   3.4e-14       1      55 [.      13      67 ..      13      71 .. 0.94

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 3.8e-18
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrL 55
                l++l +f+av +++s++ AAeeL +s +a+s++++rL+++l++pLf R g+++ +
  CTQ28713.1 13 LNLLPVFDAVYRSRSVRLAAEELAMSTSALSHALSRLRSALNDPLFYREGHRMCP 67
                68999*******************************************9999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2483.99
//
Query:       CTQ28714.1  [L=158]
Description: GCN5-related N-acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-18   67.6   0.0    1.3e-18   67.4   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
      3e-10   40.1   0.0    3.8e-10   39.8   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.8e-09   37.3   0.0    4.4e-09   36.7   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00019   22.1   0.0    0.00023   21.9   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    0.00034   20.8   0.0    0.00043   20.4   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    0.00072   19.5   0.0     0.0012   18.8   0.0    1.3  1  FR47             FR47-like protein
     0.0054   16.8   0.0     0.0091   16.1   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
      0.023   14.9   0.0      0.036   14.2   0.0    1.3  1  Acetyltransf_6   Acetyltransferase (GNAT) domain
      0.037   13.5   0.0      0.039   13.4   0.0    1.1  1  Acetyltransf_15  Putative acetyl-transferase
      0.048   13.7   0.0      0.075   13.1   0.0    1.3  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
       0.12   12.1   0.0       0.65    9.7   0.0    1.9  1  Acetyltransf_8   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   7.7e-22   1.3e-18      14     113 ..      31     133 ..      15     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 7.7e-22
                     HHHHHHHHHHHHHHHHSTTC.EEEEEEETTEEEEEEEEEEEET..TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTE CS
  Acetyltransf_1  14 ppnedaseeefeesfsleae.gllvaeedgeliGfisllkipd..ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedn 105
                     ++  +++ee++e  f    + + l++e  g+ +G++ ++  +   + ++ +y+e+l+V p+yrg G+G+aLl++++++a ++++ ++++ v ++n
      CTQ28714.1  31 EEVVTTPEEIRETLFASGSKtEALICEVAGKAVGYAVFFTSYStwLGRNGIYMEDLYVTPDYRGIGAGKALLKTIAQYAVQRQCGRLEWSVLDWN 125
                     33344444444444444555688999*******************99************************************************ PP

                     HHHHHHHH CS
  Acetyltransf_1 106 daairlYe 113
                     ++ai +Y 
      CTQ28714.1 126 QPAIDFYL 133
                     *******5 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   2.3e-13   3.8e-10      14     108 ..      31     139 ..       8     145 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 2.3e-13
  Acetyltransf_10  14 kefisp.ealreri.e.egealllvaeeggkivGviel.rdgs........hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnas 94 
                      +e++++ e++re + +  +++  l++e+ gk vG++   ++ s        +++ l+V p+yrg G gkaLl+++ ++a +++ +  e +v   
       CTQ28714.1  31 EEVVTTpEEIRETLfAsGSKTEALICEVAGKAVGYAVFfTSYStwlgrngiYMEDLYVTPDYRGIGAGKALLKTIAQYAVQRQCGRlEWSVLDW 124
                      34444349999998754677889*************444444445555566***************************8888888788888887 PP

  Acetyltransf_10  95 p.yavpfYeklGFka 108
                      +  a++fY ++G ++
       CTQ28714.1 125 NqPAIDFYLSIGAQP 139
                      77*********9766 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   2.7e-12   4.4e-09       5      73 ..      53     136 ..      42     136 .. 0.71

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 2.7e-12
                     EEEEEETTEEEEEEEEEEES........TCTEE..EEE-GGGTTSSHHHHHHHHTT.......SEEEEEEEEE..THHHHHHHHHHTT CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld........aeitr..laVdpeyrgkGiGraLleaae.......kgiileqlel..naekaikfYeklG 73 
                      +++e  gk vG++++  +          +     l+V p+yrg G G+aLl+ ++        g +le + l  n ++ai+fY + G
      CTQ28714.1  53 ALICEVAGKAVGYAVFFTSYstwlgrngIY--MedLYVTPDYRGIGAGKALLKTIAqyavqrqCG-RLEWSVLdwN-QPAIDFYLSIG 136
                     5678888*****999999989776654333..266******************622234432333.3343344322.39*****9987 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.4e-07   0.00023       2     137 ..       3     137 ..       2     138 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.4e-07
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmrylpe..pltleeaeewlerawaeeseeegygwaivlkdtgviGsv.glrdleeedee...aelgymlaps 90 
                     +++r++t++D+ a++ +  + +v +  pe   +t+ee +e l    a++   ++   +i++ +++++G++  +++++ + ++      ++++ p+
      CTQ28714.1   3 ITIRQATPDDATAIYDMIYELAVYEKAPEevVTTPEEIRETLF---ASG---SKTEALICEVAGKAVGYAvFFTSYSTWLGRngiYMEDLYVTPD 91 
                     689************9766666665333345666666666665...444...34446777766768***95556889998889976667999*** PP

  Acetyltransf_3  91 fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     ++g G ++  ++ + +ya +++   rl++ +   N+  i  + ++G 
      CTQ28714.1  92 YRGIGAGKALLKTIAQYAVQRQ-CGRLEWSVLDWNQPAIDFYLSIGA 137
                     ******************6666.************999988888885 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.7e-07   0.00043       1     133 [.       5     136 ..       5     143 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.7e-07
  Acetyltransf_4   1 iraateeDakeilaiyaeyvvntaitfeyevssveefekflealdsekeyvflvae.sdrivGyaylg.qfkkr.akdwkaelsvylaerdnnke 92 
                     ir at++Da +i ++  e  v ++  +e++v + ee+   l a   + +   l+ e +++ vGya          ++++  +   y+   d +  
      CTQ28714.1   5 IRQATPDDATAIYDMIYELAV-YEKAPEEVVTTPEEIRETLFAS--GSKTEALICEvAGKAVGYAVFFtSYSTWlGRNGIYMEDLYVT-PDYRGI 95 
                     89**********998876555.566788899*****99777775..44444445555*******987633333359999999999997.799999 PP

  Acetyltransf_4  93 glgrelidaleqvlkeqnienllaeiaspnensiqfhkalG 133
                     g g++l++ + q++ +    +l+ ++   n+++i+f+ ++G
      CTQ28714.1  96 GAGKALLKTIAQYAVQRQCGRLEWSVLDWNQPAIDFYLSIG 136
                     99***********************************9999 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   7.1e-07    0.0012      21      82 ..      80     142 ..      70     148 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.1e-07
                 TSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT.-HHHHHHHHHHT-EEEEE CS
        FR47  21 ggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvas.NtpsirlyeklGfekiee 82 
                 g ++  l+v p+ r+ G g+ l k +a+  ++r+   l + v + N+p+i +y ++G +  +e
  CTQ28714.1  80 GIYMEDLYVTPDYRGIGAGKALLKTIAQYAVQRQCGRLEWSVLDwNQPAIDFYLSIGAQPQDE 142
                 557888**************************9998888877655************987743 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.6e-06    0.0091      16      56 ..      71     112 ..      55     115 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.6e-06
  Acetyltransf_CG  16 eYe.vrkegvldfthTeVpeelrGkGiAkkLvkaalddaree 56 
                      +Y+ + + + + ++  +V + +rG G +k+L k++ ++a ++
       CTQ28714.1  71 SYStWLGRNGIYMEDLYVTPDYRGIGAGKALLKTIAQYAVQR 112
                      453466677899999************************987 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.2e-05     0.036      26     133 ..       8     119 ..       2     126 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-05
  Acetyltransf_6  26 tdpedleallelf..raqwarr.pdvfadpltraflrdllaalaargalrlyvlrldgrpvAvalglrsgdrlyywlggydpe......laklsp 111
                     ++p+d+ a+++     a +++  ++v +   ++++ + l+a+   + + + +  ++ g+ v++a+ + s  ++    g y ++      +++ ++
      CTQ28714.1   8 ATPDDATAIYDMIyeLAVYEKApEEVVT--TPEEIRETLFAS---GSKTEALICEVAGKAVGYAVFFTSYSTWLGRNGIYMEDlyvtpdYRGIGA 97 
                     4677777777777333444444334432..222333334333...67889999999********9999998888888887666666666****** PP

  Acetyltransf_6 112 gllllweliedaaeeGlrrfdl 133
                     g+ ll  +++ a+++ + r+++
      CTQ28714.1  98 GKALLKTIAQYAVQRQCGRLEW 119
                     ***************9999887 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.4e-05     0.039      64     101 ..      50     109 ..       6     145 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.4e-05
  Acetyltransf_15  64 s......................silieknvleiYtlyvsekyrgkGlakklLeeslkel 101
                      +                      s+   +n++ + +lyv ++yrg G  k lL+ + ++ 
       CTQ28714.1  50 KtealicevagkavgyavfftsySTWLGRNGIYMEDLYVTPDYRGIGAGKALLKTIAQYA 109
                      344444444444444444444445677789989999*****************9986654 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.6e-05     0.075       1     103 [.       4     110 ..       4     114 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.6e-05
                     .EEEE-GGGHHHHHHHHHHHTT----H........HHHHHHHHHHTTSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS- CS
  Acetyltransf_9   1 eirelteedldevlellkyaFqdeespl......eeireyfrklleesrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrg 89 
                     +ir++t++d  +++++  +   +e+ p       eeire +    ++ ++l++e  g+ vg + +++   +  G+  +  +  +  v p++rg g
      CTQ28714.1   4 TIRQATPDDATAIYDMIYELAVYEKAPEevvttpEEIRETLFASGSKTEALICEVAGKAVGYAVFFTSYSTWLGR--NGIYMEDLYVTPDYRGIG 96 
                     59*************9987655555555559996599999999999***************************97..589999************ PP

                     HHHHHHHHHHHHHH CS
  Acetyltransf_9  90 vlskLlaraleemr 103
                       ++Ll++  +++ 
      CTQ28714.1  97 AGKALLKTIAQYAV 110
                     *******9988765 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0004      0.65      86     143 ..      88     143 ..      23     145 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0004
                     ESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEEE CS
  Acetyltransf_8  86 igeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekekev 143
                     +  +++rg g ++all+++++y++++ ++ r        N+ ai ++ ++G ++++e+
      CTQ28714.1  88 V-TPDYRGIGAGKALLKTIAQYAVQR-QCGRLEWSVLDWNQPAIDFYLSIGAQPQDEW 143
                     3.5899******************99.9***********************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1235.03
//
Query:       CTQ28715.1  [L=547]
Description: phosphoenolpyruvate carboxykinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-200  666.0   0.0   2.9e-200  665.8   0.0    1.0  1  PEPCK_ATP  Phosphoenolpyruvate carboxykinase
  ------ inclusion threshold ------
      0.025   14.7   0.0       0.14   12.4   0.0    2.2  3  AAA_33     AAA domain
      0.087   13.2   0.0       0.17   12.2   0.0    1.5  1  AAA_16     AAA ATPase domain


Domain annotation for each model (and alignments):
>> PEPCK_ATP  Phosphoenolpyruvate carboxykinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  665.8   0.0  4.9e-204  2.9e-200       3     464 ..      23     491 ..      21     492 .. 0.96

  Alignments for each domain:
  == domain 1  score: 665.8 bits;  conditional E-value: 4.9e-204
                 EEES--HHHHHHHHHHT.....TS-EE-TTS-EEE--TT--S--GGGEEEE--TTTTTTS-BTTT......BEEE-HHHHHHHHHHHHHHHHTS-EEEE CS
   PEPCK_ATP   3 virnlsvaeLveealkr.....eegkltstgalvvetgkktgRspkdkfiVedeetedkiwWgkv......nkpiseekfealkekvleylkekelyvv 90 
                  ++n+ ++ L+ ++++       +g++t++ga++v+tg +tgRsp+dk+iV+de+t+d++wW +       nkp+s++ +++lk+ v+ +l++k+lyv+
  CTQ28715.1  23 FFYNPDYDLLIAHETSPeltgaARGVMTDSGAVAVDTGIFTGRSPRDKYIVRDEQTRDTVWWADSglgrndNKPLSPDVWRSLKSLVAGQLSGKKLYVI 121
                 5789999999999888767765669*************************************886677777**************************** PP

                 EEEE-SSTTT-EEEEEEES-HHHHHHHHHHSBGGS-S-TTT---SEEEEEETT----HHHH.--SSS-EEEEETTTTEEEEES---THHHHHHHHHHHH CS
   PEPCK_ATP  91 dafagadpkyrlkvrviterawqalfvknllirpteeeleefepdftilnapefkadpekd.glnsetvvalnlekklvlilgteYaGEikKsifsvmn 188
                 da +ga+p++rl vr++te+awqa+fvkn++i p+++el++f+pdf++ln + +++ ++++ g+nse++va+nl+++++li+gt+Y+GE+kK++fsvmn
  CTQ28715.1 122 DAWCGASPDTRLGVRFVTEVAWQAHFVKNMFIVPSADELASFTPDFVVLNGAGCTNANWQAqGMNSENFVAFNLSERIQLIGGTWYGGEMKKGLFSVMN 220
                 **************************************************999998888877************************************* PP

                 HHHHHTT-EEEEEEEEE-T.TS-EEEEEE-TTSSHHHHH-BTTB-EEESSEEEE-SS-EEES-SEEEEE-TT--TTTSHHHHHHHSTT-EEES-EE-TT CS
   PEPCK_ATP 189 yllpkkgvlsmhcsanvgekkgdvalfFGLSGtGKTtLsadperkligdDehgwsdegvfniegGcYaKtidLskekepeiynairfgavlENvvldee 287
                 yllp+kg++smhcsan g ++gdvalfFGLSGtGKTtLs+dp+r+ligdDehgw+d+gvfn+egGcYaKti+L+ ++epeiy air++a+lENvv++ +
  CTQ28715.1 221 YLLPQKGIASMHCSANRG-EAGDVALFFGLSGTGKTTLSTDPHRQLIGDDEHGWDDDGVFNFEGGCYAKTINLDPQAEPEIYGAIRRNALLENVVVR-A 317
                 ******************.677**************************************************************************6.5 PP

                 T--EETT--SS-S--EEEEEGGGSSSB-TT.SEE--EEEEEEEE--TTS-S-SEEEE-HHHHHHHHHH-EEEE-----------EEEE-GGG-GGG-SS CS
   PEPCK_ATP 288 trevdfddtslteNtrvaypiehienakee.svaghpkniifLtadafgvlPpvskLtkeqamyhFlsGytakvaGtergvtepeatFsacfgapFlpl 385
                 +++vd++d s+teNtrv+yp++hi+n++++ s+aghp+++ifL+adafgvlPpvs+Lt+eq++yhFlsG+t+k+aGterg+t+p++tFsac+ga+Fl l
  CTQ28715.1 318 DGSVDYADGSKTENTRVSYPLSHIDNIVKPvSRAGHPSKVIFLAADAFGVLPPVSRLTTEQMQYHFLSGFTSKLAGTERGITQPTPTFSACYGAAFLLL 416
                 6899**********************77651667***************************************************************** PP

                 -HHHHHHHHHHHHHHH--EEEEEE-SEESSSTTTSEE--HHHHHHHHHHHHTTCCCTS-EEE-TTT--EEES-BTTC-G CS
   PEPCK_ATP 386 hpteyaelLaeklekhnakvyLvNtGwtggaygvgkrislkatraiikaildgeleavefekdpvfglevptevpgvps 464
                 hpt+ya++La k+++++a+++LvNtGw+g     gkr+sl++tr+ii+ail+g+    + ++ pvfgl++p+++pgv+s
  CTQ28715.1 417 HPTQYASVLAAKMAESGAEAWLVNTGWNGE----GKRLSLRDTRSIISAILNGTTGPLREDTIPVFGLAIPQSIPGVDS 491
                 ****************************99....*********************999*******************97 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.44   2.6e+03      47      77 ..      93     123 ..      42     150 .. 0.69
   2 ?   12.4   0.0   2.3e-05      0.14       1      22 [.     243     264 ..     243     271 .. 0.86
   3 ?   -3.2   0.0       1.5   8.8e+03      85     107 ..     341     363 ..     329     365 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.44
      AAA_33  47 dytrvldrlyqilnelarkalsagrnvilda 77 
                 d + +++++++ l+ l++  ls ++ +++da
  CTQ28715.1  93 DNKPLSPDVWRSLKSLVAGQLSGKKLYVIDA 123
                 5566788889999999988888888888887 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.3e-05
      AAA_33   1 lvllvGlpGsGKstlaerllkk 22 
                 + l+ Gl+G+GK+tl++  +++
  CTQ28715.1 243 VALFFGLSGTGKTTLSTDPHRQ 264
                 6789***********9987766 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.5
      AAA_33  85 rarflklarrlgvpvrivvvetd 107
                  ++++k ++r+g p +++++ +d
  CTQ28715.1 341 IDNIVKPVSRAGHPSKVIFLAAD 363
                 56788889999999999999887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.9e-05      0.17      12      60 ..     228     285 ..     225     360 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
      AAA_16  12 Llsalervrsgrp.elvllsGesGvGKsslvrellralekd.......ggif.lrgkc 60 
                 ++s+ +++++g+   + l+ G sG+GK++l +  +r+l +d       +g+f ++g c
  CTQ28715.1 228 IASMHCSANRGEAgDVALFFGLSGTGKTTLSTDPHRQLIGDdehgwddDGVFnFEGGC 285
                 56777888899988999**************999999988877777764555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4092.60
//
Query:       CTQ28716.1  [L=297]
Description: HTH-type transcriptional regulator YjiE [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-17   64.1   0.0    1.5e-17   63.6   0.0    1.2  1  LysR_substrate   LysR substrate binding domain
    5.1e-14   52.0   0.7    1.2e-13   50.8   0.0    2.0  3  HTH_1            Bacterial regulatory helix-turn-helix protei
  ------ inclusion threshold ------
       0.08   12.8   0.0       0.43   10.4   0.0    2.0  2  HTH_30           PucR C-terminal helix-turn-helix domain
       0.15   11.8   0.1       0.28   10.9   0.1    1.4  1  Ribosom_S30AE_C  Sigma 54 modulation/S30EA ribosomal protein 


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   3.4e-21   1.5e-17       5     207 ..      93     292 ..      90     294 .. 0.90

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 3.4e-21
                     CEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEE.TTS..GGGG.S CS
  LysR_substrate   5 rgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvas.pdh..pLar.g 93 
                     ++++ri a p+l+  llp+++a ++ r  + ++++++ + ++ +  l+eg+ D+ + + ++      ++ +++++  l+lv + ++h  pL++ +
      CTQ28716.1  93 TQKIRIDAAPSLSVLLLPEIIAGYTDRKNK-TFHVESINVNDAVFNLKEGKSDFILSFYNEelMNYPFINHKIFDSYLHLVSPcDEHgrPLFHlH 186
                     5789********************988766.677777777799999***************999999****************533455777765 PP

                     SSECGGGGCTSEEEEESTTSTHHHHHHHHHHCT.TEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEE CS
  LysR_substrate  94 epvsledLadeplilleegsglrdlledalrea.glkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvy 187
                     + v       +pl+ + ++s + ++++++ +++ +++   ++ ++  e l++++++G+G+++lp++ +++el++grl  +  + + lp   +l++
      CTQ28716.1 187 RGV-------LPLMKYANDSYMGRQVNQVIDRTpEITFSLTFVSSMSELLKRMILNGDGVGWLPQYSIQRELDEGRLT-ILDESLSLPIGAWLYR 273
                     555.......7**********************9********************************************.777777*******999 PP

                     ETTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflrea 207
                       +r l+ a+++f+++++++
      CTQ28716.1 274 SGSR-LNQAAERFWQHIKTR 292
                     9998.************875 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   2.7e-17   1.2e-13       8      59 ..      14      65 ..       8      66 .. 0.94
   2 ?   -3.3   0.0       2.1   9.3e+03      41      51 ..     178     187 ..     176     190 .. 0.70
   3 ?   -3.2   0.0       1.9   8.5e+03      23      30 ..     278     285 ..     272     293 .. 0.54

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 2.7e-17
                HHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  8 vavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                +a+ e++sft AA++ ++sq++ sr+i++LE+ lg  +f+R+ + l+LT +G
  CTQ28716.1 14 IALEESRSFTLAAKARNISQSSFSRRIQSLEASLGFSIFDRSANPLQLTNRG 65
                6899*********************************************999 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.1
                 HTS-SEEESSS CS
       HTH_1  41 lgvpLfeRtgr 51 
                  g pLf+  +r
  CTQ28716.1 178 HGRPLFHL-HR 187
                 6899**97.34 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.9
                 HTS-HHHH CS
       HTH_1  23 Lglsqpav 30 
                 L+ +    
  CTQ28716.1 278 LNQAAERF 285
                 34444444 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   9.5e-05      0.43       9      46 ..      16      53 ..      14      61 .. 0.91
   2 ?   -1.0   0.0      0.35   1.6e+03       9      26 ..     271     289 ..     268     292 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.5e-05
                HHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTS CS
      HTH_30  9 lenggnisatAkaLhvHrnTlryRLrrieellgldldd 46
                le++++ + +Aka +++  +++ R++ +e  lg+++ d
  CTQ28716.1 16 LEESRSFTLAAKARNISQSSFSRRIQSLEASLGFSIFD 53
                89999****************************99766 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.35
                 H.HTTT-HHHHHHHHTS-H CS
      HTH_30   9 l.enggnisatAkaLhvHr 26 
                 l ++g +++++A++   H 
  CTQ28716.1 271 LyRSGSRLNQAAERFWQHI 289
                 4478899999999876665 PP

>> Ribosom_S30AE_C  Sigma 54 modulation/S30EA ribosomal protein C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   6.3e-05      0.28       8      40 ..     120     153 ..     119     156 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.3e-05
                      EEE-S--S-B-HHHHHHHHHHHT-SEEE.EEETT CS
  Ribosom_S30AE_C   8 rtkrfelkpmsveeAilqmellghdFfv.Frnae 40 
                      + k+f+++ + v +A+  +++ + dF++ F+n+e
       CTQ28716.1 120 KNKTFHVESINVNDAVFNLKEGKSDFILsFYNEE 153
                      689**********************965488887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2312.15
//
Query:       CTQ28717.1  [L=239]
Description: leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-31  108.1   0.0    7.1e-31  107.5   0.0    1.3  1  ABC_tran      ABC transporter
    3.7e-12   46.7   2.9    5.1e-07   29.8   0.3    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      6e-05   22.6   0.1       0.19   11.1   0.0    2.2  2  SMC_N         RecF/RecN/SMC N terminal domain
    0.00027   20.6   0.1    0.00077   19.2   0.1    1.8  1  AAA_29        P-loop containing region of AAA domain
    0.00028   21.3   0.1     0.0005   20.5   0.1    1.5  1  AAA_16        AAA ATPase domain
     0.0011   18.9   0.0     0.0018   18.1   0.0    1.4  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
     0.0047   16.9   0.0     0.0092   15.9   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.013   15.1   0.0       0.03   13.9   0.0    1.5  1  AAA_25        AAA domain
       0.02   14.6   0.1      0.044   13.5   0.0    1.5  2  AAA_15        AAA ATPase domain
      0.035   13.8   0.3        1.2    8.8   0.1    2.1  2  AAA_30        AAA domain
      0.042   14.0   0.2        0.2   11.8   0.1    2.1  1  AAA_33        AAA domain
      0.049   13.4   0.1       0.61    9.8   0.0    2.3  2  IstB_IS21     IstB-like ATP binding protein
       0.06   12.3   0.0      0.088   11.7   0.0    1.2  1  AAA_10        AAA-like domain
       0.07   13.2   0.0       0.14   12.2   0.0    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
      0.072   13.6   0.0       0.12   12.9   0.0    1.3  1  AAA_23        AAA domain
       0.11   12.4   0.1       0.28   11.1   0.1    1.7  2  NACHT         NACHT domain
       0.14   12.5   0.3       0.82    9.9   0.3    2.1  1  AAA_22        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.0   6.7e-34   7.1e-31       1     136 [.      21     165 ..      21     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 6.7e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren..............esdee 84 
                 lk+vsl+++ege+va++G nGaGKStLl+ + g+ + + Gei ++g+ +++  ++ ++++ i+  p+  ++fp++tv+en              e++++
  CTQ28717.1  21 LKQVSLTVNEGETVALIGANGAGKSTLLMSVFGQPRIAGGEIFYRGEAISRkSTHFIASNGIAQAPEGRRIFPDMTVEENllmgtiaignryqaEDKAR 119
                 799***********************************************94555567889***************************88877777777 PP

                 HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++  +l+      +++     +LSgG++q++a+aral+++p+llllDEp+
  CTQ28717.1 120 MYQLFPRLEERR--GQRA----MTLSGGEQQMLAIARALMSRPRLLLLDEPS 165
                 777777777555..5555....9****************************5 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.2   2.8e-06     0.003       3      60 ..      35      92 ..      34     134 .. 0.66
   2 !   29.8   0.3   4.9e-10   5.1e-07     234     293 ..     135     191 ..     119     193 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.8e-06
      AAA_21  3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfef 60
                +liG+Ng+GKS+LL    +  r+++  ++   e+ +++++  i+s     +pe++  f
  CTQ28717.1 35 ALIGANGAGKSTLLMSVFGQPRIAGGEIFYRGEAISRKSTHFIASNGIAQAPEGRRIF 92
                79************98855444455555555555555555555555555555555555 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 4.9e-10
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvi 293
                 a  lS G +++la++ al +++   +lll+DEp +gL P +++ ++++l+el++ g  ++
  CTQ28717.1 135 AMTLSGGEQQMLAIARALMSRP---RLLLLDEPSLGLAPLVVKQIFQILRELTAQGMTLF 191
                 5568*******99999999999...*************************9998776665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00018      0.19      25      44 ..      32      51 ..      19      57 .. 0.76
   2 !    9.8   0.0   0.00048       0.5     135     194 ..     113     193 ..      61     218 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00018
                SEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAi 44
                +  a++G+NG+GKs ll ++
  CTQ28717.1 32 ETVALIGANGAGKSTLLMSV 51
                45689**********99887 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00048
                 T.......................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEE CS
                 x.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx RF
       SMC_N 135 e.......................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfiv 194
                 +                       +LSgGe++++a+a      + +p  l llDe    L    vk++ ++l+e + +  + f+v
  CTQ28717.1 113 QaedkarmyqlfprleerrgqramTLSGGEQQMLAIARA---LMSRP-RLLLLDEPSLGLAPLVVKQIFQILRELTAQgmTLFLV 193
                 0444444444444444444444449********999865...34444.58899********99*******999998543233333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   7.3e-07   0.00077      15      39 ..      24      48 ..      16      52 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 7.3e-07
      AAA_29 15 htieidlkgatlltGpsGsGKSTll 39
                 ++++++ +++ l+G++G+GKSTll
  CTQ28717.1 24 VSLTVNEGETVALIGANGAGKSTLL 48
                55666655599*************8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   4.7e-07    0.0005      10     142 ..      19     162 ..      17     193 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.7e-07
      AAA_16  10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekdg.giflrgkcdqlesaipy..sa.laqalareellrqllde.....aesaeleawre 99 
                 ++L+++  +v++g  e v l+G+ G GKs+l+ +++ + + +g  if rg++ +  +++++  s  +aqa + ++++ ++  e                
  CTQ28717.1  19 QALKQVSLTVNEG--ETVALIGANGAGKSTLLMSVFGQPRIAGgEIFYRGEAISR-KSTHFiaSNgIAQAPEGRRIFPDMTVEenllmG--------TI 106
                 5566655577777..78*******************8777775356677777766.555555655599999998888888777444441........33 PP

      AAA_16 100 kleeala............avpelagaea...srllellkrllallsrderplvlvlD 142
                 ++  +++               e +g+ a   s   +++ ++++ l   +rp +l+lD
  CTQ28717.1 107 AIGNRYQaedkarmyqlfpRLEERRGQRAmtlSGGEQQMLAIARALM--SRPRLLLLD 162
                 34444332233333344444444444444444444444444442223..246777777 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.7e-06    0.0018       9      23 .]     222     236 ..     218     236 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.7e-06
  BCA_ABC_TP_C   9 aEvrndPrVieAYLG 23 
                   +   ndP+V++AYLG
    CTQ28717.1 222 QTLLNDPEVRKAYLG 236
                   5668**********9 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.7e-06    0.0092      92     130 ..      23      62 ..      10      82 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.7e-06
                  HHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  92 elkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  +++  +++ +t++l+G  G+GKStL+ ++ ++ +++ ge+
   CTQ28717.1  23 QVSLTVNEgETVALIGANGAGKSTLLMSVFGQPRIAGGEI 62 
                  5555555559****************99999887777776 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.9e-05      0.03      30      53 ..      28      51 ..      10      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.9e-05
      AAA_25 30 lpagelallaGapgtGKttlaldl 53
                + +ge+++l+Ga g+GK+tl++++
  CTQ28717.1 28 VNEGETVALIGANGAGKSTLLMSV 51
                589*****************9975 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.2e-05     0.044      14      41 ..      21      49 ..      19      82 .. 0.89
   2 ?   -2.4   0.0       2.8     3e+03     323     354 ..     155     186 ..     145     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.2e-05
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsile 41
                lk+v++ ++e  +  liG+N++GKS++l+
  CTQ28717.1 21 LKQVSLTVNEGeTVALIGANGAGKSTLLM 49
                778888888876889************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.8
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkeland 354
                 ++ +ll++EP + L p   k++++ l+el  +
  CTQ28717.1 155 RPRLLLLDEPSLGLAPLVVKQIFQILRELTAQ 186
                 467999****9999999999999999998665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0011       1.2      14      39 ..      27      52 ..      17      85 .. 0.78
   2 ?    3.2   0.0     0.059        62      61     122 ..     126     193 ..     112     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0011
      AAA_30 14 ltsgdrvavltGpAGtGKttalkalr 39
                + ++  +++l G+ G+GK+t+l ++ 
  CTQ28717.1 27 TVNEGETVALIGANGAGKSTLLMSVF 52
                445556999************98775 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.059
      AAA_30  61 vLaeelgieastiakllkrlk..grarlepgtllivDEagmv....dtkqlaallkaaekagakvilv 122
                 +L+e  g +a+t+    +++   +ra +++ +ll+ DE ++       kq+ ++l++++++g+++ lv
  CTQ28717.1 126 RLEERRGQRAMTLSGGEQQMLaiARALMSRPRLLLLDEPSLGlaplVVKQIFQILRELTAQGMTLFLV 193
                 57888888888888877666678666777779******987554557888889999999999988887 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00019       0.2       2      24 ..      34      56 ..      34     210 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
      AAA_33  2 vllvGlpGsGKstlaerllkklg 24
                v l+G++G+GKstl+ ++  +  
  CTQ28717.1 34 VALIGANGAGKSTLLMSVFGQPR 56
                5689***********99987655 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00058      0.61      35      70 ..      18      55 ..       8      70 .. 0.75
   2 ?    1.1   0.0      0.26   2.8e+02     100     122 ..     147     171 ..     105     197 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00058
   IstB_IS21 35 vkeLatlsf.iekkenivllGpsGvGKshlaia.lgve 70
                +++L + s  +++ e ++l+G  G+GKs l ++ +g+ 
  CTQ28717.1 18 IQALKQVSLtVNEGETVALIGANGAGKSTLLMSvFGQP 55
                56776666536789*************99876624554 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.26
   IstB_IS21 100 aralkrllkvdllilDd..lgllpl 122
                 a a + + +++ll+lD+  lgl pl
  CTQ28717.1 147 AIARALMSRPRLLLLDEpsLGLAPL 171
                 2223334567888888733444444 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.3e-05     0.088       3      54 ..      13      64 ..      11      75 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.3e-05
      AAA_10  3 VylkpllanqevkgsktnasasliiGdlGnGKSvlakllvlyisllggkali 54
                V+  p  a ++v  ++++   +++iG  G+GKS l   ++ + +++gg +++
  CTQ28717.1 13 VFYGPIQALKQVSLTVNEGETVALIGANGAGKSTLLMSVFGQPRIAGGEIFY 64
                8889999999999999888989**********************99999987 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013      0.14       2      23 ..      34      55 ..      33      76 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
                EEEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgek 23
                va++G   +GKStL+ + +g+ 
  CTQ28717.1 34 VALIGANGAGKSTLLMSVFGQP 55
                9**************9999874 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00011      0.12      21      37 ..      33      49 ..      16      52 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
      AAA_23 21 ltlItGpNGaGKTTild 37
                 ++++G NGaGK+T+l 
  CTQ28717.1 33 TVALIGANGAGKSTLLM 49
                56799**********96 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00027      0.28       2      20 ..      33      51 ..      32      55 .. 0.91
   2 ?   -2.6   0.0       4.3   4.5e+03     139     162 ..     161     183 ..     144     187 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                +v+l G++G GK+tLl ++
  CTQ28717.1 33 TVALIGANGAGKSTLLMSV 51
                899*************986 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.3
                 SSCE..EEEE--TCCHHHHHHHHC CS
       NACHT 139 leeaivlevegfsesrrkqlvrky 162
                 l e+ +l +++++ +++ q++r+ 
  CTQ28717.1 161 LDEP-SLGLAPLVVKQIFQILREL 183
                 3444.6677777777777777765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00078      0.82       8      30 ..      34      56 ..      28     202 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00078
      AAA_22  8 lvvtGesGtGKTtllrrlleqld 30
                ++++G  G+GK+tll  ++ q  
  CTQ28717.1 34 VALIGANGAGKSTLLMSVFGQPR 56
                689************99998873 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1694.19
//
Query:       CTQ28718.1  [L=291]
Description: leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-27   97.2   0.0    3.8e-27   95.5   0.0    1.8  1  ABC_tran      ABC transporter
    4.2e-10   39.9   0.3    6.7e-05   22.8   0.2    2.4  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    4.5e-07   29.7   0.7    7.7e-07   28.9   0.7    1.4  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
    4.4e-06   27.3   0.3      7e-06   26.7   0.3    1.2  1  AAA_23        AAA domain
    2.5e-05   23.8   0.1      0.012   15.0   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
    0.00027   20.7   0.1     0.0023   17.7   0.0    2.1  2  AAA_30        AAA domain
    0.00098   19.4   0.3      0.022   15.0   0.1    2.3  2  AAA_22        AAA domain
     0.0018   17.9   0.1     0.0038   16.9   0.1    1.5  1  AAA_29        P-loop containing region of AAA domain
     0.0021   17.9   0.0     0.0059   16.4   0.0    1.7  2  AAA_15        AAA ATPase domain
     0.0024   18.3   0.8      0.022   15.1   0.8    2.3  1  AAA_16        AAA ATPase domain
     0.0075   15.9   0.7       0.49    9.9   0.2    2.5  2  AAA_25        AAA domain
  ------ inclusion threshold ------
      0.011   14.6   0.6       0.27   10.0   0.0    2.1  2  ABC_ATPase    Predicted ATPase of the ABC class
      0.013   15.4   0.0      0.027   14.4   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
      0.021   14.4   0.2       0.18   11.4   0.0    2.4  3  AAA_27        AAA domain
      0.022   14.4   0.1      0.047   13.3   0.1    1.5  1  SRP54         SRP54-type protein, GTPase domain
      0.036   13.6   0.2      0.096   12.2   0.2    1.7  1  FeoB_N        Ferrous iron transport protein B
       0.07   13.2   0.1       0.12   12.4   0.1    1.7  1  MMR_HSR1      50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0   3.6e-30   3.8e-27       1     136 [.      21     211 ..      21     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 3.6e-30
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE...................EETTCEGGG...................B-HHHCCHCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxx...................xxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGei...................lldgkdlke...................qeleslrkei 61 
                 l++v+l++++g+++a++G+nGaGK+t++++l+g ++ t G+i                   +                            ++ + r+ +
  CTQ28718.1  21 LNDVNLEVERGSITALIGPNGAGKTTVFNCLTGFYRATGGSIvlrarekvtdviqvlgqklH-------PddflhpaqlgrriyykmfgGTHLVNRAGL 112
                 799***************************************77777777777765555440.......14444466666666668888899999**** PP

                 EEE-SS--S-TTSBHHHH............................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEE CS
                 xxxxxxxxxxxxxxxxxx............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  62 gvlpqepqlfpeltvren............................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllll 132
                 +  +q+ +lf+e++v en                            ++ +++  +l+ +++++++++ +     +LS+Gq++r+++ara++++p++++l
  CTQ28718.1 113 ARTFQNIRLFREMSVIENllvaqhtqvnrhllagilntrgyrqaesQALDRAFYWLEVVEMVDCANRLA----GTLSYGQQRRLEIARAMCTRPEMICL 207
                 ***************************************999744433344666666677777777777....************************** PP

                 ESTT CS
                 xxxx RF
    ABC_tran 133 DEpt 136
                 DEp 
  CTQ28718.1 208 DEPA 211
                 ***7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.2   6.4e-08   6.7e-05       1      25 [.      33      57 ..      33      99 .. 0.74
   2 ?   -2.4   0.0         3   3.2e+03     266     280 ..      83      99 ..      82     110 .. 0.77
   3 !   14.8   0.0   1.8e-05     0.019     236     294 ..     183     239 ..     171     247 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 6.4e-08
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl 25
                +++liGpNg+GK++++ +l ++ r+
  CTQ28718.1 33 ITALIGPNGAGKTTVFNCLTGFYRA 57
                79*****************998664 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3
      AAA_21 266 pEngLHPkll.rrll.e 280
                 p+ +LHP+ l rr++ +
  CTQ28718.1  83 PDDFLHPAQLgRRIYyK 99 
                 8999***8876777655 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 1.8e-05
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHP...kllrrllellkelsrngaQvil 294
                  lS G++r l ++ a+  ++     +++DEp +gL+P   ++l+r++++l++ +   + v+l
  CTQ28718.1 183 TLSYGQQRRLEIARAMCTRP---EMICLDEPAAGLNPvetQALSRIIRFLRQQHG--ITVLL 239
                 57777777755555555555...99*************************99987..77765 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.7   7.3e-10   7.7e-07       2      23 .]     262     283 ..     262     283 .. 0.99

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 7.3e-10
  BCA_ABC_TP_C   2 vIAeGtPaEvrndPrVieAYLG 23 
                   vIA G P++++++  Vi+AYLG
    CTQ28718.1 262 VIARGAPQAIQANASVIAAYLG 283
                   8********************9 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.3   6.7e-09     7e-06       5      40 ..      16      52 ..      12      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 6.7e-09
      AAA_23  5 enfrsfrdqeidFsk.gltlItGpNGaGKTTildAik 40
                 +++ ++d++++ ++  +t+++GpNGaGKTT++++++
  CTQ28718.1 16 GGIKALNDVNLEVERgSITALIGPNGAGKTTVFNCLT 52
                46777789999997736******************98 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.2e-05     0.012      24      57 ..      31      65 ..      11      88 .. 0.67
   2 !    7.2   0.0    0.0029       3.1     149     207 ..     192     252 ..      94     263 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
                SSEEEEEESTTSSHHHHHHHHH.HHCTT.TTTTTT CS
                xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAil.FvLGersakklr 57
                 s+ta++GpNG+GK+ +++ +  F+  +  +  lr
  CTQ28718.1 31 GSITALIGPNGAGKTTVFNCLTgFYRATGGSIVLR 65
                369**************998853544444444555 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0029
                 HHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
       SMC_N 149 LlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadk 207
                 L +A  ++ +  + +lDe +a L   ++++++++++  +++    ++ i ++ +m+ + + 
  CTQ28718.1 192 LEIARAMCTRPEMICLDEPAAGLNPVETQALSRIIRFLRQQhgITVLLIEHDMGMVMEISD 252
                 455677788888999*********************6666522666667777777666544 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.2e-06    0.0023      18      56 ..      31      69 ..      24      86 .. 0.87
   2 ?    0.7   0.0      0.34   3.6e+02      81     121 ..     177     239 ..     114     243 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.2e-06
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrviglAptg 56
                  +++l Gp G+GKtt+ + l+  ++a gg++++ A ++
  CTQ28718.1 31 GSITALIGPNGAGKTTVFNCLTGFYRATGGSIVLRAREK 69
                45899***************************9998765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.34
      AAA_30  81 k.................grarlepgtllivDEagmv....dtkqlaallkaaek.agakvil 121
                 +                 +ra +++ +++  DE +       t+ l ++++ +++ +g++v+l
  CTQ28718.1 177 AnrlagtlsygqqrrleiARAMCTRPEMICLDEPAAGlnpvETQALSRIIRFLRQqHGITVLL 239
                 044445555555666767666777778888888543223448888888888888833577766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.1e-05     0.022       4      63 ..      30      80 ..      27     100 .. 0.73
   2 ?    2.1   0.0       0.2   2.1e+02      91     128 ..     197     240 ..     156     243 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.1e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellra 63
                + +i++++G+ G+GKTt+ + l+  +         r++  ++ l + ++ +d+ + l ++
  CTQ28718.1 30 RGSITALIGPNGAGKTTVFNCLTGFY---------RATGGSIVLRAREKVTDVIQVLGQK 80
                6799***************9999888.........5555555555555555555555555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.2
      AAA_22  91 v....ielliiDEaqh.lr..seealeeLrsllnlsrkgvqliLv 128
                 +    +e++ +DE    l+  + +al+ + ++l  +++g++++L+
  CTQ28718.1 197 AmctrPEMICLDEPAAgLNpvETQALSRIIRFLR-QQHGITVLLI 240
                 1345678999999998897665888888877777.7999999887 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   3.6e-06    0.0038      14      39 ..      23      48 ..      12      53 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.6e-06
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTll 39
                +  +e+++ ++t l+Gp+G+GK+T++
  CTQ28718.1 23 DVNLEVERGSITALIGPNGAGKTTVF 48
                4566777555**************97 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.6e-06    0.0059      12      46 ..      19      54 ..      15      87 .. 0.84
   2 ?   -1.8   0.0       1.8   1.9e+03     323     349 ..     201     227 ..     186     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.6e-06
      AAA_15 12 Rslkdveidlsee.ltvliGkNnsGKSsilealdlF 46
                ++l dv ++++   +t liG+N++GK+++ + l  F
  CTQ28718.1 19 KALNDVNLEVERGsITALIGPNGAGKTTVFNCLTGF 54
                56667777777668***************9988766 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllk 349
                 ++  ++++EP a L p   + l + ++
  CTQ28718.1 201 RPEMICLDEPAAGLNPVETQALSRIIR 227
                 56789**********988887777665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.8   2.1e-05     0.022      19      63 ..      28      71 ..      18     273 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.1e-05
      AAA_16 19 vrsgrpelvllsGesGvGKsslvrellralekdg.giflrgkcdql 63
                v +g  +++ l+G+ G GK+++ ++l   ++++g  i+lr++ +  
  CTQ28718.1 28 VERG--SITALIGPNGAGKTTVFNCLTGFYRATGgSIVLRAREKVT 71
                5555..89*******************9888886577777776655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.2   0.00047      0.49      31      52 ..      29      50 ..      24     120 .. 0.91
   2 ?    4.3   0.0     0.025        26     143     188 ..     202     242 ..     138     243 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00047
      AAA_25 31 pagelallaGapgtGKttlald 52
                 +g++++l+G+ g+GKtt+   
  CTQ28718.1 29 ERGSITALIGPNGAGKTTVFNC 50
                689***************8655 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.025
      AAA_25 143 vrlvviDplsralggdensnsdvgalvealeri.arrtgaavllvhH 188
                 ++++++D  ++ l+  e+      ++++++ r+ ++++g++vll+ H
  CTQ28718.1 202 PEMICLDEPAAGLNPVET------QALSRIIRFlRQQHGITVLLIEH 242
                 677777766665555555......3333333333679********99 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.037        39     242     265 ..      28      52 ..      24      60 .. 0.86
   2 ?   10.0   0.0   0.00026      0.27     375     413 ..     221     259 ..     207     286 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.037
                 E-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAle 265
                 + +G +t+++G++  GK+T  + l 
  CTQ28718.1  28 VERGsITALIGPNGAGKTTVFNCLT 52 
                 67888***************99884 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00026
                 -HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEET CS
  ABC_ATPase 375 plvdrvrelykklgvstilvvggsgdyldvAdtvilmee 413
                 +l+  +r l++++g++++l+   +g  ++++d++i++++
  CTQ28718.1 221 ALSRIIRFLRQQHGITVLLIEHDMGMVMEISDHIIVLDH 259
                 588899******************************985 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.5e-05     0.027      91     122 ..      22      54 ..       6      73 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.5e-05
                  HHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  91 eelkellkd.ktsvlvGqSGvGKStLinallpe 122
                  ++++ +++  ++++l+G+ G+GK+t+ n l++ 
   CTQ28718.1  22 NDVNLEVERgSITALIGPNGAGKTTVFNCLTGF 54 
                  55555555559******************9975 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.18      10      47 ..      14      52 ..       6      60 .. 0.75
   2 ?   -0.3   0.0      0.63   6.6e+02      85     127 ..      64     105 ..      56     118 .. 0.75
   3 ?   -2.7   0.0       3.4   3.6e+03      69      95 ..     179     205 ..     178     230 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
      AAA_27 10 ryGkftd.rsldfsaeeadlhliyGpNEAGKstalrAis 47
                 +G ++  + ++++ e+ +++ ++GpN AGK+t+++ ++
  CTQ28718.1 14 HFGGIKAlNDVNLEVERGSITALIGPNGAGKTTVFNCLT 52
                455554314677888899999*************99886 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.63
      AAA_27  85 aRrkgrkktlldaddqalp.eevlaallggldretFealFgLdh 127
                  R +++ +++++  +q+l  ++ l++  ++l r+ + ++Fg +h
  CTQ28718.1  64 LRAREKVTDVIQVLGQKLHpDDFLHP--AQLGRRIYYKMFGGTH 105
                 57788888888888887653777777..6788999999998666 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.4
      AAA_27  69 rigavleeadgeelefaRrkgrkktll 95 
                 r++++l+  ++++le+aR   ++ +++
  CTQ28718.1 179 RLAGTLSYGQQRRLEIARAMCTRPEMI 205
                 788999999999999999876665555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.5e-05     0.047       3      36 ..      33      66 ..      31      74 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.5e-05
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkvllva 36
                +++l+G++GaGKTt    L   +++ g +++l a
  CTQ28718.1 33 ITALIGPNGAGKTTVFNCLTGFYRATGGSIVLRA 66
                6789********************9999999877 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   9.1e-05     0.096       3      28 ..      34      59 ..      32      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.1e-05
                EEEEESTTSSHHHHHHHHHTTSEEEE CS
      FeoB_N  3 valvGnpnvGkttlfnaltgakqkvg 28
                 al+G   +Gktt+fn ltg +   g
  CTQ28718.1 34 TALIGPNGAGKTTVFNCLTGFYRATG 59
                589*****************987765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00012      0.12       3      28 ..      35      61 ..      33     179 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
                EEEESTTSSHHHHHHHHHTS.TEEESS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge.kaivsd 28
                a++G   +GK+t++n ltg  +a  ++
  CTQ28718.1 35 ALIGPNGAGKTTVFNCLTGFyRATGGS 61
                89****************944443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2201.52
//
Query:       CTQ28719.1  [L=428]
Description: High-affinity branched-chain amino acid transport system permease protein BraE [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-48  164.7  33.5    2.4e-48  164.7  33.5    2.1  2  BPD_transp_2  Branched-chain amino acid transport system / pe
    1.5e-19   70.0   2.5    1.5e-19   70.0   2.5    4.5  5  DUF3382       Domain of unknown function (DUF3382)
  ------ inclusion threshold ------
        2.2    8.6   6.1       0.57   10.5   0.4    2.7  2  YqjK          YqjK-like protein
        2.4    7.9   7.0        1.5    8.6   1.6    2.4  2  DUF443        Protein of unknown function (DUF443)


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.8     0.095   4.2e+02      58     104 ..      23      68 ..       9     118 .. 0.55
   2 !  164.7  33.5   5.3e-52   2.4e-48       2     268 .]     120     405 ..     119     405 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.095
  BPD_transp_2  58 allvallvgaavglllgllvlrlkvdeliitllllsvlvgltllllt 104
                   +l + +++g +vg++l     ++  +  ++ l +++++ +l+l ll 
    CTQ28719.1  23 GLCALIVFGPIVGVVLK-GYGFTLAPARVAILVAVVMAGRLALSLLL 68 
                   34444444444444433.22223333333333333333333333333 PP

  == domain 2  score: 164.7 bits;  conditional E-value: 5.3e-52
  BPD_transp_2   2 ilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvgl 98 
                   +l ++ l++i+++++lGl++v+g+aG+++lg  +f+a+Gay  al  ++l+  ++++l+++ +++a++g+llg++vlr   d+l+i++l++ ++++l
    CTQ28719.1 120 LLTVAILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWAMLPLGAVMAALAGALLGFPVLRMHGDYLAIVTLGFGEIIRL 216
                   66788999***************************************************************************************** PP

  BPD_transp_2  99 tlllltgitsgvkgqssvkellgfagallsflsaviv......................llalllvlavllllrrtrfGralravgeneeaaralGi 173
                   +l+++   t+g++g++ ++++l+     +    + i                        l++ lvl+v  +l+r+++Gra++a++e+e a+ra+G+
    CTQ28719.1 217 VLNNWVSFTGGPNGVPVPSPTLFGLEFTRRAKDGGIPiheffhvsynpnlkfiflyavlCLVVMLVLLVKHRLTRMPIGRAWEALREDEIACRAMGL 313
                   ****************9999999999998888888889999*************999888888888888899************************* PP

  BPD_transp_2 174 nvkrvklltfvisgalAglaGallalllgsipp.nigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   n   vkl +f++++  Ag+aG+++a ++g+++p ++ +  +  ++a+vvlGg+gs lg+v++a+++ v  +ll+ +     e++++l+g+l++ ++
    CTQ28719.1 314 NHVLVKLSAFMLGASTAGIAGVFFASYQGFVNPtSFTFFESALILAIVVLGGMGSTLGVVLAAFVLTVTPELLRGF----DEYRVLLFGVLMVMMM 405
                   ***********************************************************************77777....69**********9986 PP

>> DUF3382  Domain of unknown function (DUF3382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   2.5   3.4e-23   1.5e-19       2      97 .]      15     112 ..      14     112 .. 0.98
   2 ?   -2.8   1.3       1.8   7.9e+03      11      25 ..     123     137 ..     119     154 .. 0.69
   3 ?   -1.1   0.6      0.52   2.3e+03       6      21 ..     181     196 ..     179     217 .. 0.74
   4 ?    2.0   0.1     0.057   2.5e+02      41      69 ..     272     300 ..     260     336 .. 0.82
   5 ?   -0.2   2.6      0.27   1.2e+03       5      50 ..     354     404 ..     351     420 .. 0.76

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 3.4e-23
     DUF3382   2 aLknAliaallalvlfvpilGlqleldgtrlvleprwglvaiavavvfvgqLlrplllqalkarkklkkveskadgvlvl......tqrwiillllvvA 94 
                 aL+++++a+l+al++f+pi+G+  +l+g+ ++l p   +vai+vavv++g+L+++lllq+ ++++  +++e ++dgv+v+      + rwii+ll+ +A
  CTQ28719.1  15 ALIDSVLAGLCALIVFGPIVGV--VLKGYGFTLAP--ARVAILVAVVMAGRLALSLLLQSHRGKAFIARFEGADDGVYVRppgyrsRLRWIIPLLVGLA 109
                 799*******************..***********..************************************************************** PP

     DUF3382  95 lvw 97 
                 +v+
  CTQ28719.1 110 IVF 112
                 *97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.8
     DUF3382  11 llalvlfvpilGlql 25 
                 +  l+l++++lGl l
  CTQ28719.1 123 VAILGLIYVLLGLGL 137
                 445666666666643 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.52
     DUF3382   6 Aliaallalvlfvpil 21 
                 A++aal  ++l +p+l
  CTQ28719.1 181 AVMAALAGALLGFPVL 196
                 6677777777766665 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.057
     DUF3382  41 vaiavavvfvgqLlrplllqalkarkklk 69 
                  a++++vv+++ L++  l +   +r++++
  CTQ28719.1 272 YAVLCLVVMLVLLVKHRLTRMPIGRAWEA 300
                 57889999999999998888777766655 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.27
     DUF3382   5 nAliaallalvlfvpilGlqleldgtrlvlep.......rwglvaiavavvfv 50 
                  Ali a+++l+ ++  lG+  +l    l+++p       +++ ++++v++v++
  CTQ28719.1 354 SALILAIVVLGGMGSTLGV--VLAAFVLTVTPellrgfdEYRVLLFGVLMVMM 404
                 5777777777777777777..88888888888999999977777777776664 PP

>> YqjK  YqjK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.8      0.37   1.7e+03      39      69 ..     272     301 ..     265     302 .. 0.72
   2 ?   10.5   0.4   0.00013      0.57      33      68 ..     386     422 ..     383     426 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.37
        YqjK  39 hlilvsgllallgvrrPrrllrwlrrglgaw 69 
                 +++l+  ++++l v + r + + + r++ a+
  CTQ28719.1 272 YAVLCLVVMLVLLVKH-RLTRMPIGRAWEAL 301
                 7889999999988888.66666677777665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00013
        YqjK  33 lrslrkhlilvsgllal.lgvrrPrrllrwlrrglga 68 
                 lr + ++ +l++g+l++ + + rPr l+r++r g+ +
  CTQ28719.1 386 LRGFDEYRVLLFGVLMVmMMIWRPRGLVRTSRSGVAL 422
                 66777888888888877699************99865 PP

>> DUF443  Protein of unknown function (DUF443)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3     0.038   1.7e+02      72     176 ..      27     129 ..       9     143 .. 0.70
   2 ?    8.6   1.6   0.00033       1.5      82     174 ..     254     345 ..     252     381 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.038
      DUF443  72 avllgnllrklidvfniqlsklvnliillivlllvlvlriyiskklkkklynevelekkskekiilipkslknfllllfaylfflglvilal.valiet 169
                  +++g ++  +++   + l +  ++i++++v++  l l + ++    k + ++    + +++ ++++p+  + +l  ++  l+ l++v  +l   ++ t
  CTQ28719.1  27 LIVFGPIVGVVLKGYGFTLAPARVAILVAVVMAGRLALSLLLQSHRGKAFIARF---EGADDGVYVRPPGYRSRLRWIIPLLVGLAIVFPFLaTKYLLT 122
                 566777777777777788888899999999999999999999999999999988...688999999998888877776655554444432220234445 PP

      DUF443 170 qniiili 176
                   i+ li
  CTQ28719.1 123 VAILGLI 129
                 5555554 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00033
      DUF443  82 lidvfniqlsklvnliillivlllvlvlriyiskklkkklynevelekkskekiilipkslknfllllfaylfflglvilalvali..etqniii 174
                 + + f++  ++++ +i l  vl lv++l++ ++++l++    + + e   +++i  +   l+++l+ l a  f+lg +++ + +++  ++q ++ 
  CTQ28719.1 254 IHEFFHVSYNPNLKFIFLYAVLCLVVMLVLLVKHRLTRMPIGR-AWEALREDEIACRAMGLNHVLVKLSA--FMLGASTAGIAGVFfaSYQGFVN 345
                 56789******************************98766665.47899999999999888887776655..44444444444433355555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       978  (0.0545485); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3013.10
//
Query:       CTQ28720.1  [L=324]
Description: leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-53  179.7  40.5    7.6e-53  179.4  40.5    1.1  1  BPD_transp_2     Branched-chain amino acid transport system /
  ------ inclusion threshold ------
      0.026   14.6   0.1       0.14   12.2   0.0    2.2  2  Phageshock_PspD  Phage shock protein PspD (Phageshock_PspD)
        5.4    6.9   5.1        8.7    6.2   0.9    3.3  3  B12D             NADH-ubiquinone reductase complex 1 MLRQ sub


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.4  40.5   1.3e-56   7.6e-53       2     268 .]      29     308 ..      28     308 .. 0.82

  Alignments for each domain:
  == domain 1  score: 179.4 bits;  conditional E-value: 1.3e-56
  BPD_transp_2   2 ilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl....lllallvallvgaavglllgllvlrlkvdel....iitll 90 
                   ++n+ltl+a+++++A+G+++v+gi+G+in++hg++++++ay++a+ lall       ++l++ + l++ ++v  ++g+++ r  +++l      + l
    CTQ28720.1  29 LINGLTLGAVYGLIAIGYTMVYGIIGMINFAHGEVYMVSAYLCAIGLALLSFFgihsFPLLIFATLVFTIVVTGVYGWAIERIAYRPLrnstRLAPL 125
                   78*******************************************99999888999*6666666666666666666666666666666543344444 PP

  BPD_transp_2  91 llsvlvgltlllltgitsgvkgqssvkellgfagallsflsaviv..........llalllvlavllllrrtrfGralravgeneeaaralGinvkr 177
                   ++ +   l+l+++ ++++g+++q     ++  +gal+++++  +v          + al+ +l++++++++tr+Gr++ra+ +++++a+ lGin++r
    CTQ28720.1 126 ISAIGMSLILQNYVQLSQGPNQQG---IPTLLSGALRMTVGDGVVqitwtkvfilVAALVGMLILTWIIQYTRLGRICRATQQDRRMAAILGINTDR 219
                   555555555544444555555444...4444444444444444444568999888999999************************************ PP

  BPD_transp_2 178 vklltfvisgalAglaGallalllgsippnigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   v+ l+fvi++a+AglaG+l+++ +g+ + +ig+ +g++a++a+vlGg+gsl g+++G+l++gv+++ +  l+  ++++++v+++all+++l
    CTQ28720.1 220 VISLVFVIGAAMAGLAGVLVTMNYGTFDFYIGFIIGIKAFTAAVLGGIGSLPGAMLGGLLLGVAEAQFAGLV--NSDYKDVFSFALLVAIL 308
                   ******************************************************************554444..57************987 PP

>> Phageshock_PspD  Phage shock protein PspD (Phageshock_PspD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.3e-05      0.14      23      40 ..     101     118 ..      88     131 .. 0.81
   2 ?   -2.2   0.0      0.73   4.4e+03       6      27 ..     295     317 ..     291     318 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.3e-05
  Phageshock_PspD  23 aGvAGWAvksvArrPLkl 40 
                      +Gv GWA+  +A rPL+ 
       CTQ28720.1 101 TGVYGWAIERIAYRPLRN 118
                      79**************95 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.73
  Phageshock_PspD   6 lkiaGklvlltA.lrYgPaGvAG 27 
                       k +  ++ll A l + P G+ G
       CTQ28720.1 295 YKDVFSFALLVAiLIFRPQGLLG 317
                      56666788877735788988866 PP

>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.12   7.3e+02       8      24 ..      11      27 ..       5      31 .. 0.75
   2 ?   -2.6   0.1      0.85   5.1e+03       5      15 ..     122     132 ..     120     135 .. 0.81
   3 ?    6.2   0.9    0.0015       8.7       5      24 ..     220     239 ..     217     241 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.12
        B12D  8 Lfvfigagvggavfylv 24
                  v+ +ag+++ +f+l 
  CTQ28720.1 11 AAVCLAAGGAMTAFFLQ 27
                56788888888888875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.85
        B12D   5 liPLfvfigag 15 
                 l PL+ +ig+ 
  CTQ28720.1 122 LAPLISAIGMS 132
                 78*****9985 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0015
        B12D   5 liPLfvfigagvggavfylv 24 
                 +i L++ iga+++g++ +lv
  CTQ28720.1 220 VISLVFVIGAAMAGLAGVLV 239
                 89*************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1067  (0.0595125); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2312.33
//
Query:       CTQ28721.1  [L=354]
Description: leucine/isoleucine/valine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-62  212.7   8.5    1.2e-62  212.6   8.5    1.0  1  Peripla_BP_6  Periplasmic binding protein
    1.3e-22   80.4   0.0    2.2e-22   79.7   0.0    1.3  1  ANF_receptor  Receptor family ligand binding region
    5.9e-20   71.6   0.0    8.3e-20   71.1   0.0    1.3  1  Peripla_BP_5  Periplasmic binding protein domain
     0.0033   17.4   0.0      0.045   13.7   0.0    2.3  2  PhnG          Phosphonate metabolism protein PhnG
  ------ inclusion threshold ------
      0.043   14.2   0.1      0.093   13.2   0.1    1.6  1  Toprim_2      Toprim-like
        0.1   12.3   0.4       0.38   10.5   0.1    2.1  3  PGM_PMM_I     Phosphoglucomutase/phosphomannomutase, alpha/be


Domain annotation for each model (and alignments):
>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.6   8.5   4.1e-66   1.2e-62       2     341 ..      11     349 ..      10     350 .. 0.94

  Alignments for each domain:
  == domain 1  score: 212.6 bits;  conditional E-value: 4.1e-66
                   EEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEEE CS
  Peripla_BP_6   2 ikiGlltplsGpyassgksllagaqaafeeiNaaGGinGrkielverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvig 98 
                   +kiG+ +p++Gp a++g ++++ga  a+++iNaaGGi+G ki lv  Dda  p++a+++a+rlvd+++v a+vg ++s+ ++ ++ev++++g++ i+
    CTQ28721.1  11 VKIGVAGPFTGPNATYGAQYWKGASQAVADINAAGGIKGEKIVLVQGDDACEPKQAVAVANRLVDEAKVSAVVGHFCSSSTMPASEVYDEAGILTIT 107
                   8************************************************************************************************ PP

                   SS-HHC...CTTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEEEEESSHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT-S CS
  Peripla_BP_6  99 pagltg...ekcspyvfslgpsysaqasalveylakelggkkvalvyadyafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlqikaagad 192
                   p+++++   e +    f++++ +++q++ +++y+++ l++kk+a++ + + +g+ +++a++aa+++ G + v +e ++ g+ df a+v++i a ++d
    CTQ28721.1 108 PGSTNPqitERGMKDLFRMCGRDDQQGAIAANYMLDVLKAKKIAVIHDKDTYGQGLADATRAALAKRGTKEVLYEGLSRGEKDFNALVTKIGALKPD 204
                   *99996333688999*******************************************************777************************ PP

                   EEEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHHHHHH.HHHTTEEEEESCSTCCCSHHHHHHHHHHHHHHTTGGC--HHHHHHHHHHHH CS
  Peripla_BP_6 193 avllagtgadlaallkaaaeaGldakrillvswsgseedlkalgg.eaaegvlavtpyfpdldnpavrafvaayeaayggapppsqfaaggyiaadl 288
                   +v+++g  + +  l+++++e+G++ak++ +  + ++ee + a+gg +  +gvl++ +  p  + p  +a  ++++a + +   p  +++ +y+++++
    CTQ28721.1 205 VVYFGGCHPEAGPLVRQMREQGVQAKFFSG-DCIVTEELVTAAGGpQFTNGVLMTFGQDPR-TLPDGKAVIEKFRASGFE---PEGYTLYAYASIQA 296
                   *************************95544.45577888888888466999**99886666.49**********997666...9************* PP

                   HHHHHHCCTHCCHHHHHHHHHHS-BECCCTCCBEECTTSBEE--EEEEEE-.TS CS
  Peripla_BP_6 289 llealkaagsltreavraaleslgfdgllgplkftaedhqasrpvyvvqvd.gg 341
                   +++a+ a+g ++ ++  + l+s ++++++g+ +++ +    ++++ v+q+d +g
    CTQ28721.1 297 IAAAWNAVG-TDNAKASDWLKSHDVETVMGKKAWDGKGDLKVSDYVVYQWDdKG 349
                   *********.899999***************9999999999**********655 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   7.2e-26   2.2e-22       7     353 ..      35     348 ..      32     349 .. 0.83

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 7.2e-26
                   HHHHHHHHT-TTSSTTEEEEEEEEE-TT-HHHHHHHHHHHCCC.CEEEEEE-SSHHHHHHHHHHHCCTT-EEEESS---GGGG-TTTTTTEEESS-- CS
  ANF_receptor   7 klAveeinsdpnllpgiklgyeiidtccdfslaleaaldflkg.kvvaviGpssssvsdavaslanlfkiPvisygstspelsdknryptflrtvps 102
                     Av +in+ ++ ++g k+ +   d++c++++a+++a+ ++   kv av+G  +ss++ +++++ +++ i  i++gst+p ++++   + ++r+   
    CTQ28721.1  35 SQAVADINAAGG-IKGEKIVLVQGDDACEPKQAVAVANRLVDEaKVSAVVGHFCSSSTMPASEVYDEAGILTITPGSTNPQITERGM-KDLFRMCGR 129
                   689*******65.5678*************************878************************************999999.778888887 PP

                   CHHHHH.HHHHHHHHTT--EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEESTCHHHCHHHHHHHHHHTT.T--EEEEEE-HHHHHHHHHHHH CS
  ANF_receptor 103 dtsqaq.AivdilkhfgWkkvaliysdddygesglqaleeeleergicvalkekipessnddevvrkllkeiks.karvivlfcssedarellkaar 197
                   d +q+  A   +l  ++ kk+a+i+++d+yg ++++a + +l++rg + +l e ++   + ++++++l ++i+  k++v+++   +++a  l++++r
    CTQ28721.1 130 DDQQGAiAANYMLDVLKAKKIAVIHDKDTYGQGLADATRAALAKRGTKEVLYEGLS---RGEKDFNALVTKIGAlKPDVVYFGGCHPEAGPLVRQMR 223
                   77666525566788********************************7666677788...6777888887777888********************** PP

                   HTTS-STTEEEEETCHCCCECTTS-CC..HHHHHTT-E.EEEE--B-HHHHHHHHHST--CCCSSSTCCGSTTCCHHHHH...HHHHHHHHHHHHHH CS
  ANF_receptor 198 rlgltgeeyvwiasdawtsslvldkpeltgleaaegvl.gfrlkdpnspkfsefldkreklsdekqnyenegkeqisyqaalmYdaVyllaeAlnkl 293
                   ++g++     + +  ++t +lv + +   g +++ gvl +f + +++ p+ + ++   ek+++     +  ++e   y +++ Y ++ ++a A n +
    CTQ28721.1 224 EQGVQA--KFFSGDCIVTEELVTAAG---GPQFTNGVLmTFGQDPRTLPDGKAVI---EKFRA-----SGFEPEG--YTLYA-YASIQAIAAAWNAV 304
                   *****9..455555555555555555...55566665437777778888888888...44443.....4445554..44544.************** PP

                   HCHHSSSHCCB-HHHHCCHHHHHHHHHHHT-EEEETTSCEEB-TTSBBE.-EEEEEEEECT CS
  ANF_receptor 294 lrkkkpgralscntlkpweggqkllrylrnvnfeGltGdvkfdengdrv.ptydilnlqgs 353
                   +                 ++ +k +++l+    e ++G+   d +gd++  +y +++++++
    CTQ28721.1 305 G-----------------TDNAKASDWLKSHDVETVMGKKAWDGKGDLKvSDYVVYQWDDK 348
                   *.................35567778999999999****999***************9975 PP

>> Peripla_BP_5  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   2.8e-23   8.3e-20       1     301 [.      11     310 ..      11     352 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 2.8e-23
  Peripla_BP_5   1 ikvGvLhSlsGtmaisekslkdaallaieeinaagGvlgrkieavvvdpasdwelfaekaeklieedkvevvfGcwtSasRkavlpvveelnalLfY 97 
                   +k+Gv    +G  a+   + +++a  a+++inaagG++g+ki  v  d a ++++  + a++l++e kv++v+G + S+s     +v++e   l + 
    CTQ28721.1  11 VKIGVAGPFTGPNATYGAQYWKGASQAVADINAAGGIKGEKIVLVQGDDACEPKQAVAVANRLVDEAKVSAVVGHFCSSSTMPASEVYDEAGILTIT 107
                   68999999***************************************************************************************** PP

  Peripla_BP_5  98 pvqYEGe..Es.sknviYtGaapnqqaipavdyllselgakrvflvGsdyvypretnrilkallkakggevvgeeYlplgssdvqkivakikkakpd 191
                   p     +  E   k+ +      +qq   a++y+l+ l ak+++++     y +  +  ++a+l+++g + v  e l+ g++d++++v+ki + kpd
    CTQ28721.1 108 PGSTNPQitERgMKDLFRMCGRDDQQGAIAANYMLDVLKAKKIAVIHDKDTYGQGLADATRAALAKRGTKEVLYEGLSRGEKDFNALVTKIGALKPD 204
                   *887765113315789999999*************************************************************************** PP

  Peripla_BP_5 192 vvlstinGdsnvafykelkeagikaekipvvslsvaeeela.aidaealvGhlaawnYfqsvdtpenkafvakfkarvgedrvtndpmeaayiqvkl 287
                   vv+      ++ ++ ++++e+g++a+ +    + v+ee +  a +++ + G l ++      + p+ ka+++kf+a   e    +  +  ay +++ 
    CTQ28721.1 205 VVYFGGCHPEAGPLVRQMREQGVQAKFFS-GDCIVTEELVTaAGGPQFTNGVLMTFGQ-DPRTLPDGKAVIEKFRASGFEP---EGYTLYAYASIQA 296
                   ***99999999************998665.4555555555404566777777665442.3344577777888887765553...4445667777777 PP

  Peripla_BP_5 288 waqAvekagstdve 301
                   +a+A +++g+++++
    CTQ28721.1 297 IAAAWNAVGTDNAK 310
                   77777777776654 PP

>> PhnG  Phosphonate metabolism protein PhnG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.5e-05     0.045      36      85 ..     212     264 ..     182     267 .. 0.77
   2 ?    0.7   0.0      0.16   4.7e+02      10      52 ..     289     333 ..     285     335 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
                 EEEEEEEEEEEEGGGTSSEEEEEEEEEEEEEEEETTS-...EEEEEEESS-HH CS
        PhnG  36 aPetglvmvrgraggtgepFnlGEvtvtraavrledgt...vGvayvlgrdkr 85 
                 +Pe+g  + ++r++g +++F+ G++ vt+  v  ++g     Gv ++ g+d+r
  CTQ28721.1 212 HPEAGPLVRQMREQGVQAKFFSGDCIVTEELVTAAGGPqftNGVLMTFGQDPR 264
                 79*****************************9997554444888888888765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.16
                 HHHS-HHHHHHHHHHH..-----EEEEEEEEEEEEEEEEEGGGTS CS
        PhnG  10 Lakapaeelealleel..alapevellraPetglvmvrgraggtg 52 
                  a a+ ++++a+++++  + a++ ++l++ ++  vm +   +g+g
  CTQ28721.1 289 YAYASIQAIAAAWNAVgtDNAKASDWLKSHDVETVMGKKAWDGKG 333
                 67788999********886678889**999999999877777766 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.1e-05     0.093      35      89 ..     141     194 ..     117     195 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.1e-05
    Toprim_2  35 alkllerypekkvvlalDnDkaGrkaakrlaellreagvrekir..elpegkDwnel 89 
                 +l++l++   kk+ + +D+D+ G+  a+  ++ l ++g++e       +++kD+n+l
  CTQ28721.1 141 MLDVLKA---KKIAVIHDKDTYGQGLADATRAALAKRGTKEVLYegLSRGEKDFNAL 194
                 4444444...57**************************6665554334477999975 PP

>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.7     5e+03      27      46 ..      35      56 ..      25      92 .. 0.63
   2 ?   10.5   0.1   0.00013      0.38      28      75 ..     135     182 ..     131     187 .. 0.88
   3 ?   -3.3   0.0       2.3   6.8e+03      67     102 ..     225     262 ..     219     266 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.7
                HHHHHHHCHHC..STS-EEEEE CS
   PGM_PMM_I 27 gqaiaeylkae..akkkkvvvG 46
                +qa+a++ +a   +++k v+v 
  CTQ28721.1 35 SQAVADINAAGgiKGEKIVLVQ 56
                4555555555554444444444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00013
                 HHHHHHCHHCSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE CS
   PGM_PMM_I  28 qaiaeylkaeakkkkvvvGrDtRvssrelaealaaglaanGvevillg 75 
                 + +a+y+    k+kk++v +D  ++++ la+a+ a la+ G + +l++
  CTQ28721.1 135 AIAANYMLDVLKAKKIAVIHDKDTYGQGLADATRAALAKRGTKEVLYE 182
                 5677888877889*****************************999876 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.3
                 CT-CEEEEE..EB-HHHHHHHHHHCCECEEEEE--TTS CS
   PGM_PMM_I  67 nGvevillg..llptPavsfairklkadagimitaSHn 102
                 +Gv++ +++  ++ t ++  a+   ++ +g+ +t  + 
  CTQ28721.1 225 QGVQAKFFSgdCIVTEELVTAAGGPQFTNGVLMTFGQD 262
                 56666555556666666666666666777777775555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2746.40
//
Query:       CTQ28722.1  [L=764]
Description: pyruvate formate-lyase 4/2-ketobutyrate formate-lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   6.2e-195  649.6   0.0   8.3e-195  649.2   0.0    1.1  1  PFL-like     Pyruvate formate lyase-like
    7.4e-41  139.0   0.0    1.3e-40  138.1   0.0    1.5  1  Gly_radical  Glycine radical


Domain annotation for each model (and alignments):
>> PFL-like  Pyruvate formate lyase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  649.2   0.0  9.2e-199  8.3e-195       4     647 .]      27     618 ..      23     618 .. 0.98

  Alignments for each domain:
  == domain 1  score: 649.2 bits;  conditional E-value: 9.2e-199
                 HHHH...HHHCC.HT.TS.E.EE.........SHHHHHHHHHHHHCTTS.-HHHHHHHHHHHHHHHS----.-TT-SS---SSSSTTEEE--TTTTCHH CS
    PFL-like   4 rier...lkknytlyeakps.le.........lerarllteseketege.pvdirrakalakilsnlplyI.rddElIvGsqtkkprkraifPegsirm 87 
                 +i++   +++nyt+ye+++s l+         +e++++  ++e++t++  ++d++ a +   i++++++yI ++ E+IvG+qt++p+kra+ P+g+i+m
  CTQ28722.1  27 QIDVrdfIQHNYTPYEGDESfLAdatpattalWEQVMAGIRVENATHAPvDFDTNVATS---ITAHAAGYInQPLEKIVGLQTDQPLKRALHPFGGIKM 122
                 6777788*************9889***********************************...************************************* PP

                 HHTT.TTTCCCSSSSTEBEECHHHHHHHHHHHHHTTTSHHHHHHHHCHHTTHHHHTSTSEE--CHGGSSCEEEE--HHHHHTCHHHHHHHHHHHHHHHH CS
    PFL-like  88 lede.ldtlaereadgfeideeekkilreifpyWkgktvnegvfdayteetkaaresgiitvglpdasgrGhiipdyervlkyGldglieeikeklakl 185
                 ++++ +++       g e+d++ + +++       +kt+n+gvfd+y++++ ++r+sg++t glpd +grG+ii+dy+rv++yG+++l++e + ++a l
  CTQ28722.1 123 IKSAfEAY-------GREMDPDFEYQFTA-----LRKTHNQGVFDVYSPDMLRCRKSGVLT-GLPDGYGRGRIIGDYRRVALYGIRYLVRERELQFADL 208
                 ****7777.......**************.....9**************************.************************************* PP

                 CCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHTTTS--SSHHHHHHHHHHHHHHHHHHSSCCEEE-BSHHH CS
    PFL-like 186 dlddpeaiekaefykaviisleavieyaeryarlaeelaeqetdpkrkaeLleiaevcgrvpskpaetfqEAiQlvwfvhlalvkesngaamslgRldq 284
                 +     a+e                e +e + rl+eelaeq    +++ +++e+a+++g ++s+pa+t++EA+Q+++f++la+vk++ng amslgR+ +
  CTQ28722.1 209 Q----PALE--------------RGEALEATLRLREELAEQ---RRALLQMQEMAARYGCDISHPARTAREAVQWLYFAYLAAVKSQNGGAMSLGRTAT 286
                 9....4444..............24567899**********...******************************************************* PP

                 HTHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTTB-----HHHHCCCTTT--.--EEEEESB-TTSSB---HHHHHHHHHHHHH.--SSSEEEEEE-TTS CS
    PFL-like 285 ylypyyekDleeGrlteeeaqelidclwlklrevrklrseeyaelfagydp.fqnltvGGqnedGrdavnelsyliLealenl.klpePnlsvrvskkl 381
                 +l++y+e+Dl++G l+ee+aqelid++++k+r+vr+lr++e + lf+g dp ++++++GG++ dGr++v+++++++L++l  + ++pePnl+v++s+ l
  CTQ28722.1 287 FLDIYIERDLRAGLLNEEQAQELIDHFIMKIRMVRFLRTPEFDSLFSG-DPiWATEVLGGMGLDGRTLVSKTTFRYLHTLHTMgPAPEPNLTVLWSQAL 384
                 ************************************************.888*********************************************** PP

                 -HHHHHHHHHHHHTTS--CEEEEHHHHHHHHHHTT--HHHHHTEEEETTTEEEECCCEES-SSEEEECHHHHHHHHTTTCETTTTCB-S-----GG.G- CS
    PFL-like 382 peeflkkaaevsrkGlgspayenddviipallnrgvsledArdyaiaGCvepqipGkeeqffaarinlakaLelalnnGrdektgkqvgpktgdvt.ef 479
                 p +f+k+aa+vs+  ++s++yendd+++          +d  dyaia+Cv+p+++Gk++qff+ar+nlak+L++a+n+G+dek + qvgpkt +++ e+
  CTQ28722.1 385 PVAFKKYAARVSIA-TSSLQYENDDLMRS------DFHSD--DYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLRdEV 474
                 **************.**************......77688..******************************************************9** PP

                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHTSTTHHHHT--GGGT-SSEECEEEEEE-HHHHHHHHHHHHHHHTTSTSS-HHHHHH CS
    PFL-like 480 ksyeelmeafkkqleylvklyvealniihymhdkyapepllsalvddciergkdlgegGarynfsgpqgvGlanvaDSLsAIkklVFddkkvtleeLke 578
                 ++y ++m+  +  +++l+ +y+ alniih+mhdky++e+ l+al+d+++ r++++g+            +Gl+++aDSLsAIk+    ++++++++ ++
  CTQ28722.1 475 LDYGTVMASLDHFMDWLAVQYISALNIIHCMHDKYSYEAALMALHDRDVYRTMACGI------------AGLSVAADSLSAIKY----ARVKPVRD-HH 556
                 *********************************************************............***************....********.** PP

                 HHHTTTTT-HHHHHHHHHS--TTSS-HHHHHHHHHHHHHHHHHHCTSB-TTSCEEEEEE--TTTHHHHH CS
    PFL-like 579 alaanFegeeelrqlllnaPkYGndddevDeiakevvetfaeevkkyknyrggkftaslltissnvpyg 647
                 +la++F +e       +++P+YGn+dd+vD ia ++ve+f++++++ ++ r++ +t+s+lti+snv+yg
  CTQ28722.1 557 GLAVDFVIE-------GDYPQYGNNDDRVDAIACDLVERFMRKIQALPTWRQAVPTQSILTITSNVVYG 618
                 *********.......****************************************************8 PP

>> Gly_radical  Glycine radical
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.0   1.5e-44   1.3e-40       1     106 []     634     745 ..     634     745 .. 0.98

  Alignments for each domain:
  == domain 1  score: 138.1 bits;  conditional E-value: 1.5e-44
                  TTSTTSHHCCHHHCHCHHCCCCCCTSECGCETTEETTECCCCHHHHHHHCC-CCCCCCHHCCCCCC......T-SECEEEEETCCCHCCCCCSCGGGC CS
  Gly_radical   1 lapganpmegrdkegplaslnSvakldyevaldgislnlkavpdalgkeeeerienlatlldgyfe......ggfhlnvnvvsretLldAqehpekyp 92 
                  +apganpm+grd++g++asl+Svakl++++a+dgis+++++vp+algk+   + +nl+ lldgyf+      gg+hlnvnv++re+LldA+ehpe+yp
   CTQ28722.1 634 FAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKAPSAQENNLVGLLDGYFHheetveGGQHLNVNVLNREKLLDAIEHPEQYP 731
                  79***************************************************************6689***************************** PP

                  CEEEESSSSEEECC CS
  Gly_radical  93 qltiRVsGYavnFv 106
                  +ltiRVsGYav+F+
   CTQ28722.1 732 NLTIRVSGYAVRFN 745
                  *************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 5811.15
//
Query:       CTQ28723.1  [L=402]
Description: propionate kinase/acetate kinase C, anaerobic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.8e-150  501.0   0.0     2e-150  500.8   0.0    1.0  1  Acetate_kinase  Acetokinase family


Domain annotation for each model (and alignments):
>> Acetate_kinase  Acetokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.8   0.0  1.1e-154    2e-150       2     389 ..       7     386 ..       6     387 .. 0.98

  Alignments for each domain:
  == domain 1  score: 500.8 bits;  conditional E-value: 1.1e-154
  Acetate_kinase   2 vLviNaGSsSlKfqlleaeakeevllkglveeilleeaellkklegekkeaektaiadheealklilntlkeekvikdlkeiaaighRvvhggek 96 
                     vLviN+GSsS+Kf++l+a a+++ ll+g++e i+ e a l+ +  g++     +a   +e al++i+ +l +   +++++++a+ighRv+hgg  
      CTQ28723.1   7 VLVINCGSSSIKFSVLDA-ASCDCLLNGVAEGINAERASLSLN--GGE--PVALAQRGYEGALQAIAGALAQ---RDLIDSVALIGHRVAHGGDL 93 
                     8*****************.8**************999998855..888..8899999***************...899***************** PP

  Acetate_kinase  97 ftesvlitdevvekikdlielaplhNpanlegieaakkllpevknvavfDtafhqtlpeeaylyalpeelyeehgiRrygfHgtshkyvskraak 191
                     ftesv+i +ev+++i+++++laplhN+a l+gi +a++l+pev +vavfDt+fhqtl++ea+ly+lp+e+y+++g+RrygfHgtsh+yvs+ra  
      CTQ28723.1  94 FTESVIISEEVINNIRQVSSLAPLHNYASLSGIASAQRLFPEVMQVAVFDTSFHQTLAPEAFLYGLPWEYYQNLGVRRYGFHGTSHRYVSQRALA 188
                     *********************************************************************************************** PP

  Acetate_kinase 192 ilgkpledlnlivcHlGnGaSvaavknGksvdtsmgltpLeGlvmgtRsGdidpailvylaeteglsadeventlnkksGllglsglssDlreve 286
                     +lg p+++  l+++HlGnGaS++av+nG+svdtsmg+tpLeGl+mgtRsGd+d++++ ++a ++ ++ +++e+++n  sGllg+sglssDlr +e
      CTQ28723.1 189 LLGLPEQESGLVIAHLGNGASICAVRNGRSVDTSMGMTPLEGLMMGTRSGDVDFGAMAWIAGETRQTLSDLERVANTASGLLGISGLSSDLRVLE 283
                     *********************************************************************************************** PP

  Acetate_kinase 287 daaeegdeeaelalkvyvhrlakyigeyaavlegkvDaivFTgGigenaalvrelvlkalevlglevdkeknk..nrsGedelisteqskvkviv 379
                     +a++eg+ +a+la+k++vhr+a++i+ +aa+l +++D+i+FTgGigen+ l+r+lv + l+v+gl++d ++n+  n+ Ge+ lis + s+v+++v
      CTQ28723.1 284 QAWHEGHARARLAIKTFVHRIARHIAGHAAAL-QRLDGIIFTGGIGENSVLIRRLVSERLTVFGLAMDAARNQqpNSAGER-LISADGSRVRCAV 376
                     ********************************.6**************************************656667777.************* PP

  Acetate_kinase 380 vptnEelaia 389
                     +ptnEe +ia
      CTQ28723.1 377 IPTNEERMIA 386
                     *********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2984.08
//
Query:       CTQ28724.1  [L=443]
Description: L-threonine/L-serine transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.9e-09   34.7  27.4    1.4e-08   34.2  27.4    1.1  1  Trp_Tyr_perm  Tryptophan/tyrosine permease family
  ------ inclusion threshold ------
       0.14   12.0   1.1        3.7    7.3   0.1    2.7  2  SPC25         Microsomal signal peptidase 25 kDa subunit (SPC


Domain annotation for each model (and alignments):
>> Trp_Tyr_perm  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2  27.4   1.6e-12   1.4e-08      13     370 ..      29     417 ..      22     440 .. 0.73

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.6e-12
  Trp_Tyr_perm  13 agtviGaGmlalPvatagagfipsllllilswvlmlasgllllEvllaake.easfttlakkllGkkgniivalvllfllyiLlvAyisggGsilse 108
                    gt+iGaG+l  P+ +   g ip l++l+l+  ++++    l+ + l   +   ++t+ +++ +Gk+g +++++ + f +  Ll  y   + +  + 
    CTQ28724.1  29 FGTAIGAGVLFFPIRAGFGGLIPILVMLVLAYPIAFYCHRALARLCLSGANpSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMT 125
                   69***************************999888888888888777666658899*******************************9999999999 PP

  Trp_Tyr_perm 109 lleeasg.ialsarlavliftlvlgalvvlstkavdrinrvllflklvafvlllallls.....kvksdvLls...aksdtskvslvlsalPvllls 196
                     e++ +  al++ ++ l++ l+++++++++  ++ ++ + l+   + ++v++  +l++      +++ +L +   +++d + + +v   + +++ s
    CTQ28724.1 126 FWENQLQmPALNRGVVALLLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVVISLSLIPywnsaVIDQVNLSDialTGHDGI-LVTVWLGISIMVFS 221
                   9988888466777788888999**********98888888888877777777777777611111455555555753333333.344455688***** PP

  Trp_Tyr_perm 197 fGFhgivpslv.....ky...ldkn..vkkvkkailiGtliaLvlyllWelivlGnlpreelariiakggn.ldtlveallellesks.lelav... 278
                   f F  iv s v     +y    +++  ++k  + i   +++  +++++  ++ l +l+ +++a ++a++ + l+ l + +  ++  ks +++++   
    CTQ28724.1 222 FNFSPIVSSFVvskreEYeaqFGREytERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMADAKAQNIPvLSYLANHFASMSGTKStFATLLeyg 318
                   ********98733332122223443336788888999999999**********************99986625777887777766544133333111 PP

  Trp_Tyr_perm 279 .elFsflAlatSflGvalglfdyladl.....fklsds..kkgrlklglvtflpPlvlalffPeg.flkalgyAG.laatilavilPallawkarkk 365
                    ++ + +A++ Sf+G  lg ++ l  l     +k +++  ++g+l++ +++f++   + + + +  +l  ++  G  + + l+++lP+    + rk 
    CTQ28724.1 319 aSIIALVAIFKSFFGHYLGTLEGLNGLilrfgYKGDKTrvSSGKLNTLSMVFIMGSTWVVAYANPnILDLIEAMGaPIIASLLCLLPMY---AIRKA 412
                   14667789999*********999887632312333333225688889999999999999999664145667777766777777777764...44444 PP

  Trp_Tyr_perm 366 kknap 370
                      a+
    CTQ28724.1 413 PSLAK 417
                   44444 PP

>> SPC25  Microsomal signal peptidase 25 kDa subunit (SPC25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1   0.00041       3.7      19      68 ..      13      62 ..       3      73 .. 0.87
   2 ?    2.3   0.1     0.015   1.3e+02      57      75 ..     260     278 ..     256     283 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00041
       SPC25 19 fkeshtltdvrLalGylavaiaavaflydykveFeeskpvlaiavvlYfi 68
                   s + +d+   lG++ +ai a++++++   +F    p+l+++v++Y i
  CTQ28724.1 13 SLSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILVMLVLAYPI 62
                556778899999************************************76 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.015
       SPC25  57 pvlaiavvlYfilsgiltl 75 
                 ++l++avv++f++s+++tl
  CTQ28724.1 260 SMLMVAVVMFFAFSCLFTL 278
                 6899************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3307.30
//
Query:       CTQ28725.1  [L=329]
Description: catabolic threonine dehydratase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-76  257.4   0.3    2.2e-76  257.1   0.3    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
      0.057   13.5   0.0       0.12   12.5   0.0    1.5  1  HTH_9     RNA polymerase III subunit RPC82 helix-turn-helix d


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.1   0.3   2.5e-80   2.2e-76       6     294 .]      26     312 ..      22     312 .. 0.97

  Alignments for each domain:
  == domain 1  score: 257.1 bits;  conditional E-value: 2.5e-80
                 SS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EE CS
        PALP   6 gpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGaev 104
                  +T + r++ +s+++++++flK E+++ tgSfK+Rga + l  l+ ++++k+vv++s+GNh++++++ +a+lG++  +v+p++a+++kva++  + aev
  CTQ28725.1  26 YKTGMPRSNYFSERCQGEIFLKFENMQRTGSFKIRGAFNKLCGLTAAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEV 124
                 5677778999****************************99999888889************************************************** PP

                 EEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTCCS CS
        PALP 105 vevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalarslr 203
                 v+ g+++++++a+a ++ +  eg+++++++d+p vi+g+gtiglEile+l  ++d v+vp+GgGgliaGia ++k+ +p++r+igv++e+++ +a+s+ 
  CTQ28725.1 125 VLHGDNFNDTLAKASDIVEL-EGRIFIPPYDDPQVIAGQGTIGLEILEDL-YDVDNVIVPIGGGGLIAGIAIAIKSINPTIRIIGVQSENVHGMAASWY 221
                 ********************.*****************************.6*********************************************** PP

                 ..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCTTCEEEEEEE-B CS
        PALP 204 agrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelkegdrvvviltg 294
                 ag+ ++  ++ t+adg +v +p+ l+ e++++lvd+iv vs++++ + m+ l +r+++++e ++a a aal   + ++ +++  ++v +++g
  CTQ28725.1 222 AGEITSHRHAGTLADGCDVARPGKLTYEIARQLVDDIVLVSEDDIRQSMVALIQRNKVITEGAGALACAALlSGKLDSYIQNR-KTVSLISG 312
                 ***********************************************************************888888888888.88888876 PP

>> HTH_9  RNA polymerase III subunit RPC82 helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.3e-05      0.12      30      57 ..     251     279 ..     244     280 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHS.STHHHHHHHHHHHHHTTSE CS
       HTH_9  30 lrelvkktk.LsldqVkksLvvLiqhrlV 57 
                 +r+lv ++  +s d +++s+v+Liq++ V
  CTQ28725.1 251 ARQLVDDIVlVSEDDIRQSMVALIQRNKV 279
                 68999999999**************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2680.20
//
Query:       CTQ28726.1  [L=313]
Description: DNA-binding transcriptional activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-30  105.7   0.0      3e-30  105.2   0.0    1.1  1  LysR_substrate  LysR substrate binding domain
    1.1e-17   63.7   0.0    2.2e-17   62.8   0.0    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.14   12.1   0.0       0.21   11.5   0.0    1.3  1  NMT1            NMT1/THI5 like


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0     5e-34     3e-30       8     205 ..      99     295 ..      98     298 .. 0.95

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 5e-34
                     EEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGGG CS
  LysR_substrate   8 LrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLargepvsled 100
                     +++g+p+ ++ +++ +++ +f+  +P+ ++++ e++ +++l ++++g+lD+ai ++      ++l+++pL+e ++vlva ++    +   v+l+ 
      CTQ28726.1  99 VSFGFPSLVGFTFMSEMVHQFKMTFPKARVSMYEAQLSAFLPAIRDGRLDFAIGTLSDemKLQDLHVEPLFESEFVLVANRAR--IGNGTVRLAS 191
                     579*******************************************************************************4..4555999*** PP

                     GCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTCCCH CS
  LysR_substrate 101 LadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgrels 194
                     L++e+++l e + g+  +l+  l+++g++++  + ++s+ ++++lv++ + ++++p  +  + + + + v++p++e +lp +++++v+ k+ +l 
      CTQ28726.1 192 LQHEQWVLPETNMGYYSELLTTLQRSGIRRENIVNTDSVVTIYNLVLNADFLTVIPCDMTTP-FGSSQFVTIPIKE-ALPvARYAAVWSKNYRLK 284
                     ***********************************************************966.78888999*****.9999************** PP

                     HHHHHHHHHHH CS
  LysR_substrate 195 pavrafidflr 205
                      a++ ++++++
      CTQ28726.1 285 TAAASLVEMAK 295
                     *******9976 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   3.6e-21   2.2e-17       2      60 .]      10      68 ..       9      68 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 3.6e-21
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++l +f++v ++gs+ + A++Lgl+qpavs+ i ++E+ +g +L++R + g++LTeaG+
  CTQ28726.1 10 QHLVVFQEVIRSGSIGAGAKALGLTQPAVSKIIGDMESYFGSELIVRRNTGVSLTEAGQ 68
                699********************************************999********8 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.6e-05      0.21      47     150 ..      47     156 ..      34     178 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.6e-05
                 EE-HHHHHHHHHTT--EEEEEEEE-S--EEEEEECCC--SSGGGGTTSEEE....E-S-TTHHHHHHHHHHHTT-..-GGG-EEEE-.TT-HHHHHHCT CS
        NMT1  47 vsyqesllaarakglpvvsvaallqeplsglivlkdsgikspkDLkGkrig....yvgspfekallkallakdgg..dpsdvtlvnvggtslakalltg 139
                  +   +l+++r  g+ ++  ++++ +  ++++   ++ +++++ L    +     +++s ++ +++++++++  +   ++ v + +++ + + +a+ +g
  CTQ28726.1  47 SYFGSELIVRRNTGVSLTEAGQVFLNWSEAITREMKNMVNEMNALTNSAVVdvsfGFPSLVGFTFMSEMVHQFKMtfPKARVSMYEAQLSAFLPAIRDG 145
                 566778899999999999999999555555555555559999999999987443334445699************4444678999999999******** PP

                 SSSEEECEETT CS
        NMT1 140 kvDaaiggyen 150
                 + D+aig++ +
  CTQ28726.1 146 RLDFAIGTLSD 156
                 ******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 2730.23
//
Query:       CTQ28727.1  [L=40]
Description: putative nitrilotriacetate monooxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      210  (0.0117129); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 314.21
//
Query:       CTQ28728.1  [L=266]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-15   55.8   0.0    8.2e-15   55.1   0.0    1.3  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
     0.0047   17.3   0.1      0.012   16.0   0.1    1.7  1  DUF1039         Protein of unknown function (DUF1039)
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.17   11.3   0.0    1.2  1  SBP_bac_3       Bacterial extracellular solute-binding protei


Domain annotation for each model (and alignments):
>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   1.4e-18   8.2e-15      83     243 .]      89     248 ..      65     248 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 1.4e-18
                     SEEEEEEEEETTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT--HHHHSSEE.EE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH-H CS
  Phosphonate-bd  83 asyrsviivradsdiqsledLkgktiafvspsStsGylvpaalLvkeagldpeddfsev.fsgshdaavlavlsgdadaaavsadaledlvaegp 176
                     ++yrs+++vr+ +  + l d+ g++ +  + +S sGy v + +  ++   + +++fs+v fsgsh+++++ + + +ad aa++  ++  l + +p
      CTQ28728.1  89 RRYRSLLVVREADSHRMLGDFLGRRAVCNAEHSQSGYNVLRKMV-APLS-REGRFFSAVmFSGSHRQSLRELQQENADIAAIDCVTYALLQRHQP 181
                     58****************************************98.5543.5579***************************************** PP

                     HHHTTEEEEEEEEEEE--EEEEETTS-HHHHHHHHHHHHH---SHHHHHHHHHTTEEEEEE--GGGG CS
  Phosphonate-bd 177 edkdelrviassppipndpvvvrkelseelkekiqdallslaeteegkkllealgiegfvpaddsdy 243
                      + + l+ i  sp+ p+ p+    + ++++ + +++al +l +++  + l +al i g+++++ + y
      CTQ28728.1 182 QALAGLVAIGWSPAAPGLPLITAGATPAATLNSLREALQQLVSDDRYRSLCDALLICGYSDMSREAY 248
                     *******************************************************999999999887 PP

>> DUF1039  Protein of unknown function (DUF1039)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     2e-06     0.012      13      48 ..     213     249 ..     209     262 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2e-06
     DUF1039  13 hailnaLPllipDeelrlvceAlLlfGLget.akAta 48 
                 +++++aL +l+ D   r  c AlL  G  +  + A a
  CTQ28728.1 213 NSLREALQQLVSDDRYRSLCDALLICGYSDMsREAYA 249
                 6899***********************8654144555 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.8e-05      0.17      89     217 ..      95     230 ..      90     233 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.8e-05
                 EEEEETTSHGTCCHSSCGCGTTSEEEEETTSHHHHH..HHHHHHC.......TSEEEEE.SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx.......xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  89 llvrkkdaskissiksladLkgkkvgvqagstaeel..lkeelkk.......gaeivef.dtleealqaLkngrvdavvadspvlaylvkknpdkkvvl 177
                 l+vr++d     s++ l d+ g++ +  a ++++ +  l++   +         ++v f  ++++ l++L+++++d ++ d ++ a l++++p + + l
  CTQ28728.1  95 LVVREAD-----SHRMLGDFLGRRAVCNAEHSQSGYnvLRKMV-AplsregrFFSAVMFsGSHRQSLRELQQENADIAAIDCVTYALLQRHQPQALAGL 187
                 5666433.....4566668878777777776655555444433.346666663344544499*********************************9999 PP

                 E...ECGGCECEEEEEEETTTHHHHHHHHHHHHHHHHTTHHHH CS
                 x...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 178 v...eeplsseeyaiavrkgdseLrkainkalaelkadgtlak 217
                 v     p ++    i +  +  + ++ + +al++l  d ++  
  CTQ28728.1 188 VaigWSPAAPGLPLITAGATPAATLNSLREALQQLVSDDRYRS 230
                 9887666666666667777777888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2117.44
//
Query:       CTQ28729.1  [L=346]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-29  103.3  35.6    1.9e-29  103.3  35.6    2.0  2  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   7.8     0.011   1.9e+02     126     176 ..      38      84 ..      19      88 .. 0.59
   2 !  103.3  35.6     1e-33   1.9e-29       5     241 ..      73     300 ..      67     311 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.011
  FA_desaturase 126 apsksrrrkwrllawlllllawlglwlalllllglall.lwlvplllllfll 176
                    + ++++ ++  l +wll++ ++ g++++++++  l+l+ +     +lll+++
     CTQ28729.1  38 QLARGWLWRSELPTWLLIVTVYGGWFACVAGWRTLGLFpA-----TLLLIWF 84 
                    3344555557777777777777777777777777664442.....2222222 PP

  == domain 2  score: 103.3 bits;  conditional E-value: 1e-33
  FA_desaturase   5 allla.lllglfllgitgslaHeaaHgalfkkrklnrwlndllgallglplgisysawrisHlrHHay..tngpdeDpdlaplalsrfeglfry.. 95 
                    +l++a lll +f  ++ +sl+He++Hg    ++ +  w+n llg+l  l+++++y  +r+sHl HH++  + +p++Dp++      +++++ ++  
     CTQ28729.1  73 GLFPAtLLLIWF-TAWYMSLQHELIHG----HPTRLAWFNQLLGTL-PLAVWYPYGVYRDSHLAHHRNhlLTHPEDDPESYYVTAESWQRFSAWqr 162
                    444555777777.56647********7....5559********775.566679*********9999999***********9888877777777642 PP

  FA_desaturase  96 llrlllgllvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglalllwlvplllllfllalvlnyveHyggdwg 191
                    +l  l+ +++  +lla+   ++ + + + +a++++ rr   ++ + llll++l++w a+ ++++l   ++++++ + + +l+ v+ ++eH +   +
     CTQ28729.1 163 RLIHLRNTFWGRLLLAPMMDIIHTLNSALWAFREGDRRAIAMWSLHLLLLTGLLTWMAAQGFSPL---WFVLAVSYPALALTKVRSFLEHRA---A 252
                    23334444444478888877777777888888888888899999999999999999999999998...89999999999999999*****88...6 PP

  FA_desaturase 192 erqvetsasirsaswllnlltgnlnyHieHHlfPgvpwyrLpelhrrlre 241
                    +++++ s   + a+ +++ l++nlnyH++HH  Pgvpwy L++l+  +r+
     CTQ28729.1 253 DDPLARSVINE-AGLPWRALFLNLNYHAVHHDLPGVPWYALRQLYL-HRQ 300
                    66666666666.********************************93.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2984.86
//
Query:       CTQ28730.1  [L=285]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-11   44.0   0.0    7.9e-11   42.4   0.0    1.8  1  T5orf172  T5orf172 domain
    5.1e-08   33.5   0.1    1.4e-07   32.1   0.0    1.8  2  MUG113    Meiotically up-regulated gene 113


Domain annotation for each model (and alignments):
>> T5orf172  T5orf172 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   8.8e-15   7.9e-11       1      95 [.       8      93 ..       8     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 8.8e-15
    T5orf172  1 gyvYiltnessegetillKIGrtsn.vqrRlkelskyptkppselevvae.kevrkvpnahrvErlihkeLadrryrvkcdcgkehrEwFevsleev 95
                gyvYil  +s++  t ++KIG t+  +++R ke+++   +pp+ l  + +  + r+vp+ h vE  +h  ++d r+r  +    +++E+F+v++e +
  CTQ28730.1  8 GYVYIL--VSDK--TPYIKIGGTDYlPEKRCKEINT---QPPYCLYAPWRvADYRSVPDWHNVETWLHYLFRDSRVRTIA----NQKELFNVTPELA 93
                89***8..3333..3479*****************4...444444433334889*******************6666632....59******98765 PP

>> MUG113  Meiotically up-regulated gene 113
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   1.6e-11   1.4e-07       2      69 ..      22      92 ..      21     102 .. 0.86
   2 ?   -2.4   0.0      0.88   7.9e+03      33      47 ..     106     118 ..      89     134 .. 0.67

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.6e-11
      MUG113  2 KIGrTnnv.erRlnelnrqcpskltllryyppss....pnahrlErllhleLkdkrlrdekcdcEwFevpaes 69
                KIG T+ + e+R +e+n+q p++  l++++ + +    p+ h +E  lh  ++d r+r   +++E F+v++e 
  CTQ28730.1 22 KIGGTDYLpEKRCKEINTQPPYC--LYAPWRVADyrsvPDWHNVETWLHYLFRDSRVRTIANQKELFNVTPEL 92
                ******777***********999..6666665556668*********************87788*****9975 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.88
      MUG113  33 sspnahrlErllhle 47 
                 +     +++rl+h++
  CTQ28730.1 106 T--TKPKIDRLFHHQ 118
                 4..566788888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2440.36
//
Query:       CTQ28731.1  [L=248]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-06   27.1   0.0    7.5e-06   25.6   0.0    1.8  1  Proteasome    Proteasome subunit
  ------ inclusion threshold ------
      0.071   13.0   0.0       0.12   12.2   0.0    1.3  1  Phage_base_V  Type VI secretion system, phage-baseplate injec


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   8.4e-10   7.5e-06       7     176 ..       4     185 ..       2     191 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 8.4e-10
                 EEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEE...ETT.EEEEEEESHHHHHHHHHHHHHHHHHHH....HH....HSSGTCHHHHHHHHHHHHH CS
  Proteasome   7 vvGikgkdgvvlaadkratagskllskstveKifki...ddh.igvafaGlaaDartlvrraraeaqlyr....lr....ygrpipverlvarvaaklq 93 
                 +v++   dg v+a+d+r+ ag  +    t++K++      ++ +++  aG  a ++ +++ ++a++++++    ++    y+  + + + + +v ++ +
  CTQ28731.1   4 CVAMCLADGLVFASDSRTNAG--VDHIATFKKLHVFhqeGERvLVLQSAGNLATTQSVISLLSARIRTQQepnlMQvtslYDAAMLIGKTLLEVIQRDS 100
                 899****************55..44455678877762224452456789***********998877766522211122347888888888888888888 PP

                 HHHHHCTTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEES...SEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHH CS
  Proteasome  94 aytqrsgrrpfgvslliagvdeeggpeLyqidpsGsyieek...davaiGsgseaaktalekeykedltleeavelavkalkeale 176
                 ++ q+ +  +f ++ll++g    ++ +L++i p G++ie     +++ iG+ s++ k+++++ ++ d  le+a+  a+ ++ ++l+
  CTQ28731.1 101 SNQQTCSNTNFNCNLLLGGQIAGETHRLFHIYPEGNFIEATrdtPYFQIGE-SKYGKPIIDRVLTIDTPLEQAMCCALISIDSTLR 185
                 88888899******************************9987789*****9.999*****************99999988888776 PP

>> Phage_base_V  Type VI secretion system, phage-baseplate injector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.4e-05      0.12      53     102 ..      37      86 ..      24      90 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
                   XXXTTXEEEEEEXXTTTXXEEEEEEEXXSSSXXSXXBTS-EEEE-TTS-E CS
  Phage_base_V  53 apsvGEqvvllspsGelatavvlpglysdafpapsnsadaevirfpDGav 102
                     + GE v++l   G+lat+  +++l s+   + ++ + ++v++  D a+
    CTQ28731.1  37 FHQEGERVLVLQSAGNLATTQSVISLLSARIRTQQEPNLMQVTSLYDAAM 86 
                   5678************************9998888777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1981.28
//
Query:       CTQ28732.1  [L=271]
Description: Transglutaminase family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-24   84.2   0.4    1.5e-23   83.4   0.4    1.4  1  Transglut_core   Transglutaminase-like superfamily
    1.4e-21   77.2   0.1      9e-21   74.6   0.0    2.2  2  Bact_transglu_N  Bacterial transglutaminase-like N-terminal r


Domain annotation for each model (and alignments):
>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.4   1.7e-27   1.5e-23       2     111 ..     116     217 ..     115     218 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 1.7e-27
  Transglut_core   2 alaeeltagakdplekakaiyewvrknveysaprrtpgsrdaeavletgkGncedfaslfvallRalGipaRvvtgylsgeeekeqsvasedaHa 96 
                     ++a++l   +++ +e +++++  +  +++ys p++t+ +++a +++   kG+c+d++++f a +Ral ipaR+v+gy+++++     +++  +Ha
      CTQ28732.1 116 EFAQRL-YRPDAAEESLNQLMADLLLRMPYS-PGATQVQDSAADAFARAKGVCQDHTHVFLACCRALEIPARYVSGYVYSDN-----AQHVAMHA 203
                     567777.6677788999**************.***********************************************875.....899999** PP

  Transglut_core  97 wvevylegygWvplD 111
                     w+ev+l +++W+++D
      CTQ28732.1 204 WAEVWL-DGRWLSFD 217
                     ******.*******9 PP

>> Bact_transglu_N  Bacterial transglutaminase-like N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.0     1e-24     9e-21       3      80 .]       5      80 ..       3      80 .. 0.93
   2 ?   -0.2   0.0      0.22     2e+03      22      40 ..     102     120 ..      99     163 .. 0.77

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 1e-24
  Bact_transglu_N  3 vrHrtrYtYdrpvslapqvlrLrPrsharqrvlsyslkvePepaevnwqqDafgnkvarvvvdephteleveaeseve 80
                     + H trY Yd++v+++ q+lrL+Prs+arq++ +++l++  + a   +++D +gn ++ +++d+ph+e++++a+++v+
       CTQ28732.1  5 IDHLTRYGYDEEVKFSTQYLRLTPRSTARQTITAWTLTLP-DGA-AVTTTDGWGNVLHVLTLDNPHKEITIRASGIVD 80
                     89************************************76.454.48999*************************996 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.22
  Bact_transglu_N  22 lrLrPrsharqrvlsyslk 40 
                      lr++P + a++ +++++ +
       CTQ28732.1 102 LRCTPLTRADTAIREFAQR 120
                      7999999999999988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2026.62
//
Query:       CTQ28733.1  [L=309]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-79  265.4   9.2    9.3e-79  265.2   9.2    1.0  1  Alpha-E   A predicted alpha-helical domain with a conserved E


Domain annotation for each model (and alignments):
>> Alpha-E  A predicted alpha-helical domain with a conserved ER motif.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.2   9.2   5.2e-83   9.3e-79       1     293 []       1     306 [.       1     306 [. 0.93

  Alignments for each domain:
  == domain 1  score: 265.2 bits;  conditional E-value: 5.2e-83
     Alpha-E   1 mlSRvAenLfWlgRYlERaentaRllrvtlqlllde.....eeewrallaalgaeegfeeryeeaeleevlkfllldeenpgSiasclraarenaravR 94 
                 mlSR+A++LfW++RYlERae++aR+l+vt++l++ +     +++++  l+ + ++e f++r+ + ++ ++l+f++ld +np Si+sc+++a +na+avR
  CTQ28733.1   1 MLSRTASELFWMARYLERAESYARVLDVTWKLSMIPrhsqqSRDLALPLNLSMTHELFQARHARFTMSNLLNFFALDGNNPCSIYSCVEMAWNNAHAVR 99 
                 9*********************************94455569999999999***********9989********************************* PP

     Alpha-E  95 erlssemWevlnelylelke....klsel......eflervkerlaafsGlaeetmlrdegwrFlrlGrrlERadntarlldvklael....eve..ds 177
                 + ls+e+We++n++ +el++        l       f+e+vker+++f+G++ +t+lr+++ +F+ +G+ +ERa  t++ll +k ++l    +    ++
  CTQ28733.1 100 GSLSAEVWESINATRIELRTlrqqG---LgelgsdGFFEWVKERVHLFRGAVIGTLLRNDALSFIGIGTLIERAFATTQLLLIKDQQLtndpD-PvrEY 194
                 *******************775431...2333667************************************************9999875443.166** PP

     Alpha-E 178 lqlealLrsvssletYrrryrsriepervlelLlldednPrSlafqleeleealaalspaeseegrsseaerllgellaelrladieell.eglhelld 275
                 ++l++lL++vs+ e+Y + yr+ ++ e+v+elL+l++d+PrSl+++++ l  +l+++++++     s ++ rl+++l+ +lr+++ ++l+  +l+  l+
  CTQ28733.1 195 YRLDTLLNAVSAREAYNSLYRQPVSRETVMELLILRNDIPRSLRASIADLVGELEKIANDR-----SYQPLRLAHQLNVDLRFSTRDDLAqADLQTTLN 288
                 *********************************************************7733.....45899*******************88******* PP

     Alpha-E 276 elqeelaelsdaiserYf 293
                  l++++++lsd+i ++Y+
  CTQ28733.1 289 GLLARINALSDSIRQTYL 306
                 *****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2504.67
//
Query:       CTQ28734.1  [L=479]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.8e-162  540.5   0.0   2.1e-162  540.3   0.0    1.0  1  CP_ATPgrasp_2  Circularly permuted ATP-grasp type 2
   1.4e-155  517.3   0.2   1.8e-155  517.0   0.2    1.1  1  CP_ATPgrasp_1  A circularly permuted ATPgrasp


Domain annotation for each model (and alignments):
>> CP_ATPgrasp_2  Circularly permuted ATP-grasp type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  540.3   0.0  2.4e-166  2.1e-162       1     375 []      78     451 ..      78     451 .. 0.98

  Alignments for each domain:
  == domain 1  score: 540.3 bits;  conditional E-value: 2.4e-166
                    -EEE-HHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHTTSS-GG.GGG-TT--GGGTT---GGG-S-SEEEEEEEE.SSS-EEEEEEE-SS---H CS
  CP_ATPgrasp_2   1 PriisaeeWaeleaGlaqRarllnaflaDiYgeqkllkegvlPaelvegspgflrelkgvkppggvrlhiaavDLvrdedgrwlVlednlraPsGv 96 
                    Prii+a eW+++ +G++qR+++lnafl DiY+eq++l++g++Pae v +++++++ ++g++ p+++++hi++vD+vr++dg+++Vlednlr+PsGv
     CTQ28734.1  78 PRIIPAGEWQRIDRGIRQRVKALNAFLYDIYHEQNILRAGLIPAEQVLANEQYQPCMQGINLPNNTYAHITGVDMVRNNDGQYYVLEDNLRTPSGV 173
                    9*********************************************************************************************** PP

                    HHHHHHHHHHHHH-HHHHHHS-B---TTHHHHHHHHHHHTS-.-S...S-EEEE---SSSTTHHHHHHHHHHHT-EEE-GGGEEE-SS-EEE--TT CS
  CP_ATPgrasp_2  97 gYalenRevlsrvlpelfrelrvrrlaeffealreaLaalapakaeeprtivlLtpGpynsayfEhafLArylgveLvegsDLtvrdgrvylktle 192
                    +Y+lenR++++r++pe+f+++++++++++++ l+++L++ +    ++p  +v++tpG++nsayfEh+fLA+++gveLve++DL++++g+vy++t+e
     CTQ28734.1 174 SYMLENRKMMMRLYPEMFEQHHIAPVERYPSYLLQTLRESSLV--DDPC-VVVMTPGRFNSAYFEHSFLAQQMGVELVESADLFIKNGAVYMRTTE 266
                    ****************************************774..4676.********************************************** PP

                    --EEE-EEEE-S-GGGS-TTTS-TT-SSS-TTHHHHHHTTS-EEES-TTTHHHHSTTTGGGHHHHHHHHH-S--SSEE---EETTSHHHHHHHHHS CS
  CP_ATPgrasp_2 193 glkrVdviyrrvdddfldplelradsllGvpgLleavragnvavaNalGsgvaddkalyaflpaliryllgeellLpnvptwwcgeeealeevlen 288
                    g++rVdviyrr+dd++ldpl++rads+lGvpgLl+++rag v++aNa+G+gvaddk +y+++p++ir++lge+++L+n+ptw c+++e+l++vl+n
     CTQ28734.1 267 GPRRVDVIYRRIDDAWLDPLAFRADSMLGVPGLLSVYRAGGVVLANAIGTGVADDKSIYPYVPEMIRFYLGEQPILSNIPTWQCRKAEDLRYVLSN 362
                    ************************************************************************************************ PP

                    GGGEEEEE--------EEEGGG--HHHHHHHHHHHHHSGGGEEEEE-----EEEEE...EEEEEEEEEE-EEE.ES.SEEE-S--EEEEE CS
  CP_ATPgrasp_2 289 ldelvvkpvdesggegvligpelsaaeleelrarikanperyvaqevvelstaptl...kleprhvdlRvFvlateegirvmpggLtRvA 375
                    l+ +vvk+v+++gg+g+l+gp+++++e+e++r+r+ anp++y+aq++++lst+pt+    l+prh+dlR++vl  ++++r++pggLtRvA
     CTQ28734.1 363 LELMVVKEVHGAGGYGMLVGPRSTKEEREAFRQRLLANPANYIAQDTLALSTCPTFvdeGLSPRHIDLRPYVLS-GQEMRLVPGGLTRVA 451
                    ********************************************************6544*************6.579***********8 PP

>> CP_ATPgrasp_1  A circularly permuted ATPgrasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  517.0   0.2    2e-159  1.8e-155       1     332 []      78     407 ..      78     407 .. 0.99

  Alignments for each domain:
  == domain 1  score: 517.0 bits;  conditional E-value: 2e-159
  CP_ATPgrasp_1   1 PrivsaeewerlerGlkqRvraLnafLaDiYgdqeilkdGlvPeelvlgnaaylramnGvevPgdvylhvagiDlvraedgefrvlednlrvpsGv 96 
                    Pri+ a ew+r++rG++qRv+aLnafL+DiY++q+il++Gl+P+e+vl n++y++ m+G+++P+++y+h++g+D+vr++dg+++vlednlr+psGv
     CTQ28734.1  78 PRIIPAGEWQRIDRGIRQRVKALNAFLYDIYHEQNILRAGLIPAEQVLANEQYQPCMQGINLPNNTYAHITGVDMVRNNDGQYYVLEDNLRTPSGV 173
                    9*********************************************************************************************** PP

  CP_ATPgrasp_1  97 sYllenRkivarlfPelfaelrvrpvadyaqaLlealrevapaeaadptvvvltPGvynsayfehayLarklGveLvegrDLvvrdnkvylrtteg 192
                    sY+lenRk+++rl+Pe+f+++ ++pv++y++ Ll++lre++  +  dp vvv+tPG++nsayfeh++La+++GveLve++DL+++++ vy+rtteg
     CTQ28734.1 174 SYMLENRKMMMRLYPEMFEQHHIAPVERYPSYLLQTLRESSLVD--DPCVVVMTPGRFNSAYFEHSFLAQQMGVELVESADLFIKNGAVYMRTTEG 267
                    ***************************************99876..9************************************************* PP

  CP_ATPgrasp_1 193 lkrvdviyRRvdddflDPlefrpdsvlGvpGlleayraGnvtlanavGsGvaddkavyafvPelieyyLgeepilknvetyrceeaddlkevLdrl 288
                     +rvdviyRR+dd++lDPl+fr+ds+lGvpGll++yraG v+lana+G+Gvaddk++y +vPe+i++yLge+pil+n++t+ c++a+dl++vL +l
     CTQ28734.1 268 PRRVDVIYRRIDDAWLDPLAFRADSMLGVPGLLSVYRAGGVVLANAIGTGVADDKSIYPYVPEMIRFYLGEQPILSNIPTWQCRKAEDLRYVLSNL 363
                    ************************************************************************************************ PP

  CP_ATPgrasp_1 289 selvvkevegsggygiviGptaskaelaelarrilaepeqyiaq 332
                    + +vvkev+g+ggyg+++Gp+++k+e+++ ++r la+p++yiaq
     CTQ28734.1 364 ELMVVKEVHGAGGYGMLVGPRSTKEEREAFRQRLLANPANYIAQ 407
                    ************************999****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3907.69
//
Query:       CTQ28735.1  [L=105]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.24s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 936.10
//
Query:       CTQ28736.1  [L=581]
Description: periplasmic trehalase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.2e-169  563.1   2.9   7.8e-169  562.8   2.9    1.1  1  Trehalase        Trehalase
    8.6e-08   31.5   0.0    1.6e-07   30.6   0.0    1.4  1  GDE_C            Amylo-alpha-1,6-glucosidase
     0.0002   20.8   0.3    0.00031   20.1   0.3    1.3  1  Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin gly
    0.00057   18.8   1.6      0.014   14.1   0.0    2.3  2  Glyco_hydro_63   Glycosyl hydrolase family 63 C-terminal doma
  ------ inclusion threshold ------
      0.052   12.1   0.0      0.075   11.5   0.0    1.1  1  Herpes_UL25      Herpesvirus UL25 family


Domain annotation for each model (and alignments):
>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  562.8   2.9  2.2e-172  7.8e-169       1     511 [.      60     537 ..      60     538 .. 0.97

  Alignments for each domain:
  == domain 1  score: 562.8 bits;  conditional E-value: 2.2e-172
                 CCTTSTCCCCCGCCTS-HHHHHHHHHCHHCCHHEE..TTTTHHHHHHHHCE-SGGGS.EEE-TT-HHHHHHHHHHHCTGGHH.EECCHHCCTTCCCCHT CS
   Trehalase   1 klfgdkktfvDearlsevdrllrlikaslekaltrridkedlkkfvedtfeetgselerivpkdekeqpeyflkkaedeelrleaeelnklwkalvrki 99 
                 klf d+ktf D+ ++s++ ++l++++ ++++       ++dl++fve +f+ +        +++ ++ p+      + ++lr   ++++ lw+ l+r  
  CTQ28736.1  60 KLFADQKTFADAIPNSDPLMILADYRMQKNQ------ASFDLRHFVELNFTLP--------KENDTYVPP------KGQTLR---QHIDGLWPVLTR-- 133
                 68**************************999......58************98........445555566......799999...************.. PP

                 TTS-SCE-TTECEEE-TT-EE-SBTTB-S-BCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHSS--SBSBGGGTT---S--HHHHHHHHHHHCHCC CS
   Trehalase 100 kkkvgllpeassllplpkpfvVPGgRFrElYyWDsYfvilGLleskkvdlakgmvenfiyliekYGkilNgnRsYYlsRSQPPlltdmvlrvyektedd 198
                   ++ + +++ sllplpkp+vVPGgRFrE+YyWDsYf++lGL+es+++d +++mv nf+ +i+ +G+i+NgnR+YYlsRSQPP+++ mv +++++ ++d
  CTQ28736.1 134 --STVEVEKWDSLLPLPKPYVVPGGRFREVYYWDSYFTMLGLAESGHWDKVEDMVANFAAEIDAWGHIPNGNRTYYLSRSQPPFFSFMVSLLATH-DGD 229
                 ..99999****************************************************************************************.*** PP

                 HHHHHHHHHHHHHHHCCTT.......TCCETTCCC-CTC-EEE--SSSTTS-TCCCHHHHHHHHHCTTHCCHHHHHCCCCHHHHHCCHHCHHHHCCCCT CS
   Trehalase 199 allravlaalkkeyefwma.......eqrldevtklskryllnrygvpeetprpesyledketaeklkkerkkeevyrelkaaaesgwdlssRwlresg 290
                 ++l+ + ++l+key +wma        ++ ++ +++ ++ llnry+++++tprpes+l d++ta++++ +r+++e+yr+l++aa+sgwd+ssRw+++ +
  CTQ28736.1 230 QVLKTYQPQLEKEYRYWMAgadalapGNADKRAVRMPDGALLNRYWDDNDTPRPESWLDDVKTAKSNP-NRPATEIYRDLRSAAASGWDFSSRWMDN-P 326
                 ************************99888888999999******************************.****************************.5 PP

                 T-S.TCCCCTGGGEE-HHHHHHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE--EETTTTEE----BGGGGHHHHCT-S-HH CS
   Trehalase 291 hdtgellelrtaklvpvDLNallyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeagvylDYdlkkkkqtnyesatnlvpLwaglaske 389
                 ++   l+++rt+++vpvDLNal+++lek++a+++++ gds+ ++++++ a++r++ai+k+LWn+++g+y+DYdlk++k +n+++a++l+pL++++as+e
  CTQ28736.1 327 QQ---LATIRTTSIVPVDLNALMFHLEKTLARASKASGDSAGATQYDALANARQQAIEKYLWNDKEGWYADYDLKSHKVRNQLTAAALFPLYVNAASRE 422
                 55...********************************************************************************************** PP

                 HHHHHHHHCHHHHCCCCCEESCCCC-SBSSS-SSTTSTTEEEHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCTSEBSCEETTSTSTTBTT- CS
   Trehalase 390 qaaklvakvlekleesgllvaegglgtsllksgrQWDyPngWaPlqilaveglerygeeelaerlaerwlktvtkafsdegklvEKYdvtreaeygGgg 488
                 +     a++++ + es+ll+ +ggl t++++sg+QWD+PngWaPlq++avegl++yg++++a+++ +r+l++v++++++++klvEKYdv+  + +gGgg
  CTQ28736.1 423 R-----ATKVAAAAESRLLK-PGGLTTTTVNSGQQWDAPNGWAPLQWVAVEGLQNYGQQKIAMEVTWRFLTNVQHTYDSKQKLVEKYDVS-STGTGGGG 514
                 *.....88999999******.*********************************************************************.566677** PP

                 SSSSTTCSBHHHHHHHHHHHCCH CS
   Trehalase 489 geyvlqeGFGWvNgvvlelLell 511
                 gey+lq+GFGW+Ngv+l++L+l+
  CTQ28736.1 515 GEYPLQDGFGWTNGVTLKMLDLI 537
                 ********************975 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   4.5e-11   1.6e-07      50     281 ..     177     444 ..     160     452 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 4.5e-11
       GDE_C  50 grfeeAreilltFaktlr.hGliPNlldegqealyntvdaslwlieaiekYleyagd.aeilrriypvlqeilqkyvqGtky................. 129
                 g +++  +++ +Fa  +   G iPN    g+  +y ++ ++ ++   ++    +++d  ++l+   p l++ ++ +++G +                  
  CTQ28736.1 177 GHWDKVEDMVANFAAEIDaWGHIPN----GNRTYYLSRSQPPFFSFMVSLL--ATHDgDQVLKTYQPQLEKEYRYWMAGADAlapgnadkravrmpdga 269
                 5666667777777666542577777....5677777777777776666533..3333356777777777777777777777777777777777777777 PP

       GDE_C 130 .................................kigldeedglisagerlnqlTWmDakvkgepvtPRdGkaveinaLwyaaLkileelaekalgeakk 195
                                                  +i+ d   +  s+ +      WmD   +   +   +  +v++naL+++  k+l++ ++   + a +
  CTQ28736.1 270 llnrywddndtprpeswlddvktaksnpnrpatEIYRDLRSAAASGWD--FSSRWMDNPQQLATIRTTSIVPVDLNALMFHLEKTLARASKASGDSAGA 366
                 777777777777777777777777777777765555554444433333..4567999655544444444569*******************99999*** PP

       GDE_C 196 ssykelaekikesfekkFwdeaaaavakreilaDvlksseekdlslRpNflialslapellseekakkvlekaeeeLltplGlktL 281
                 ++y++la+  ++  ek+ w+       k++ +aD+  +s++   +l   +l+ l ++    s+e+a+kv + ae +Ll+p Gl t 
  CTQ28736.1 367 TQYDALANARQQAIEKYLWN------DKEGWYADYDLKSHKVRNQLTAAALFPLYVN--AASRERATKVAAAAESRLLKPGGLTTT 444
                 ****************99**......9*******98888878888888888888775..5689999*****************985 PP

>> Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.3   8.6e-08   0.00031     153     249 ..     322     430 ..     274     452 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 8.6e-08
                      TT......-SS----HHHH.HHHHHHHHHHHHHHHHHHTTS..--HHHHHHHHHHHHHHHHHHB.-TTS..........-BTT--HHHHHHHHH CS
  Bac_rhamnosid6H 153 Wldpe.ardgaaktekalv.ataylvrslklvakiaellgkeedakkyaalaeelkaafnkkyldsetg..........svandtqtanalpLa 234
                      W+d + +    ++t+   v  +a +++  k++a+++++ g ++ a +y+ala++ ++a++k ++++++g          +v+n+  +a ++pL+
       CTQ28736.1 322 WMDNPqQLATIRTTSIVPVdLNALMFHLEKTLARASKASGDSAGATQYDALANARQQAIEKYLWNDKEGwyadydlkshKVRNQLTAAALFPLY 415
                      45444333344455555554689999**************************************99999*******99999999999******* PP

                      TT-S-GGGH.HHHHH CS
  Bac_rhamnosid6H 235 fglvpeaeraakvae 249
                      ++   ++  ++++a+
       CTQ28736.1 416 VNAASRERATKVAAA 430
                      ***977766554443 PP

>> Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     4e-06     0.014     251     321 ..     338     408 ..     319     440 .. 0.85
   2 !    3.5   0.5    0.0069        25     420     489 ..     467     533 ..     442     535 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4e-06
                     B-HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTTEETTTTEE-EEEE-T......... CS
  Glyco_hydro_63 251 lhvDlrsWvalaakslksiaellgeeeekekyaktekelsenleklhwseeekayaDlgvhtekvklkkke 321
                     + vDl++ +    k+l++ +++ g +  + +y   +++ ++++ek+ w+++e+ yaD+ ++++kv+ + + 
      CTQ28736.1 338 VPVDLNALMFHLEKTLARASKASGDSAGATQYDALANARQQAIEKYLWNDKEGWYADYDLKSHKVRNQLTA 408
                     569*********************************************************99999866554 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0069
                     HHHHHH---SS-.--HHHHHHHHHHHHHHHHHHHHHHHTSS--SEE-TTT.--EESSSS-.....TTGGGGHHHHH CS
  Glyco_hydro_63 420 salkhyskvegpykekakeiykeLrsnlvnnivkqyketGfvweqYddkt.GkgkgakeF.....tGWtslvvlim 489
                     ++l         ++   ++i  e+    + n+ ++y+++  + e+Yd ++ G+g g  e+      GWt  v l m
      CTQ28736.1 467 EGL---------QNYGQQKIAMEVTWRFLTNVQHTYDSKQKLVEKYDVSStGTGGGGGEYplqdgFGWTNGVTLKM 533
                     333.........344455666778888999*****************65448887765542233359998887655 PP

>> Herpes_UL25  Herpesvirus UL25 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.1e-05     0.075     248     340 ..     336     431 ..     321     435 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.1e-05
                  -----SHHHHHHTHHHHHHHHHHHH-S-SS-----...--GGGS-SS--S.-TTS--STTTTTTSHHHHHHHHTTSS-----S------------- CS
  Herpes_UL25 248 rplPstfeelleelpekleaLvadlkreagnnsya...fsnkklpksiaplnkggkYekgalsrhkvvrllvkrgvlpatkgevtpeeiaevdada 340
                     P+  ++l+ +l++ l++ ++    +ag+++y      ++++ ++++   k+g Y+   l++hkv + l ++ ++p   + + +e  ++v a+a
   CTQ28736.1 336 SIVPVDLNALMFHLEKTLARASKASGDSAGATQYDalaNARQQAIEKYLWNDKEGWYADYDLKSHKVRNQLTAAALFPLYVNAASRERATKVAAAA 431
                  5578899999999999999999999999******998777778888999989**************************999999998888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3971.02
//
Query:       CTQ28737.1  [L=706]
Description: Ferrioxamine receptor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-48  167.3  30.0    1.1e-48  167.3  30.0    1.9  2  TonB_dep_Rec  TonB dependent receptor
    2.7e-24   85.8   0.6    6.8e-24   84.5   0.6    1.7  1  Plug          TonB-dependent Receptor Plug Domain
     0.0021   17.5   3.5       0.72    9.2   0.0    3.0  3  DUF560        Protein of unknown function (DUF560)


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   2.3      0.15   8.8e+02      37      94 ..     176     237 ..     146     275 .. 0.48
   2 !  167.3  30.0   1.9e-52   1.1e-48      35     469 ..     266     704 ..     239     705 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.15
                   EEEEEEEEEECCCEECCCEEECECCEEEEEEEEEEE.....EEEEEEEEEEEEEEEEEEEEEE CS
  TonB_dep_Rec  37 gylgtnplyygdnysetdnkrlrlgydydlddnlsw.....klslraglnYsstdgdsdynns 94 
                     +++++   + + +++++k++ ++y+   +d+  w     + s + ++++++ +++  +++ 
    CTQ28737.1 176 PQFSQQG-HIRLTGGTQNTKGAAFDYTDAINDQWAWrligmTRSSDTQYDHTREERYAISPSL 237
                   3333333.3333344444555555555555666555443332222223333333333333333 PP

  == domain 2  score: 167.3 bits;  conditional E-value: 1.9e-52
                   EE.........EEEEEEEEEECCCEECCCEEECECCEEEEEEEEEEEEEEEEEEEEEE..EEEEEEEEEEEEEEE....EEEEEEEE.......CEE CS
  TonB_dep_Rec  35 sr.........gylgtnplyygdnysetdnkrlrlgydydlddnlswklslraglnYs..stdgdsdynnsglgg....grsynrdn.......dyy 109
                              ++l++++   gd  ++++++++ ++y++d+++++ w  s+ + ++Y+  ++  d++y  +++++     r     +       d +
    CTQ28737.1 266 PLdgtryahngRKLSPST-NEGDPGDGYQRRQQIYSYEFDHQFTDVW--SVYSAGSYThtNVSLDQVYQVGWIDDsdmlARG----YsgsrgslDGW 355
                   223333333332222222.333335556666666788888888888*..999999999555555666666666666665222....22222333333 PP

                   EEEEEEEEEEEE...EEEEEEEEEEEEEEEEEEEEE......EECCBEESCCTC.......CSEEEEEEEEEE..EEEEEEEEEEETTEEEEEEEEE CS
  TonB_dep_Rec 110 glgnvlaaeldl...ngdlwfGsnladgldyrklsd......dgydaydplnps.......gdasdsvdrdsy..glyaqdnikltdrltltlGlRy 188
                   +++n+l a++++    ++l +G      ++y+++++       g+ + +p+ ++       +++sd+ +r+ y  gly+qd++ + +r+++++++Ry
    CTQ28737.1 356 STDNRLRADFNTgdlAHTLILG------AEYHRFRNdlwtgaGGAAPLNPFSGYtaqtghtVTYSDDNNRRYYqtGLYLQDEMVW-NRWHVDVSARY 445
                   3444444444433334444466......999985554785553333333333336669999444444444444338*********.*********** PP

                   EEETTCSSSS....EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEECCCCCEEEECSTT---EEEEEEEEEEEEEE.TTEE.E CS
  TonB_dep_Rec 189 dhysvfgkdlrag.afsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggsngaggalsngnpdLkPEtsknyelGlkldd.drln.l 282
                   d++     + + g +++rs+++ s +++l y + ++ls + sys+++  P + +               g   LkP t++++e+Glk+++ ++++  
    CTQ28737.1 446 DRIVSQQVSDTQGtSNRRSDDHISGRASLLYALDNGLSPYLSYSQAIT-PAMLPGAD------------GK-PLKPTTAEQVEAGLKFQPpGSSDlY 528
                   *8888777777777789999****************************.********............53.3*****************644447* PP

                   EEEEEEEEEEEEEEEESSSSCSTTTCSEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECECEEECTTTTSSTT.EESEEEEEEEEEEC CS
  TonB_dep_Rec 283 tlayFridiknfittdpdgpslgglgdfqyqNvgkarikGvElelsyrltpgWglglsgggytYydagddsdaddggnplpn.vPkhtanlgltYkf 378
                   ++a ++ + k++ t+dp+  +       +y  +gk+ ++GvEle+ +++tp+++   + ++yt+++ ++++++d ++n  p+ +P+++a+++++Y +
    CTQ28737.1 529 SIAIYDLTQKDVATRDPNIAT------ATYIPAGKVHSQGVELEAHHQITPQLS---TIASYTWNRLRFQDTKDGTDNNTPQlTPDQMASFWARY-Q 615
                   *******************99......999999***************999988...5666***55555544444444444448***********.3 PP

                   SEEEEEEEE.SEEEEEEECCSSEEEEECECCEEEE--EEEEEEEEEEEES......SSEEEEEEEESTTETCSCEEESTTTTTCCEB--SEEEEEEE CS
  TonB_dep_Rec 379 paggWgagl.llagarYvavggrrygdaantfrrvpgYtlldlslgYklp......knltlslgvnNLfdkryyassgyyglggypgpgRtfrlglr 468
                       + ag+ ++ag+rY+  g+  ++d+ant  r+p+ tl+d++ + +l       k+  +++++nN+ d++y + ++   +++y+g+ R++ +++ 
    CTQ28737.1 616 ----FPAGIsVGAGVRYI--GK-QWADDANTA-RLPSVTLMDAMMRADLGvwsptlKGAYVQVNANNIGDREYISGCYGT-GNCYWGAERSVIATVG 703
                   ....44445556899**6..99.888888898.***********9888877776666668999*******9999999999.**************99 PP

                   E CS
  TonB_dep_Rec 469 y 469
                   y
    CTQ28737.1 704 Y 704
                   8 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.6   1.1e-27   6.8e-24       4     108 .]      64     168 ..      61     168 .. 0.93

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 1.1e-27
                 CCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-G.GCSEEEETTEEESCCCCSCTCGCSSBGGGEEEEEEEESSCHCTTS CS
        Plug   4 dtpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgs.nrvlvlvDGvpianggsgagdlssidpedierievlkGpasalyG 101
                 +t++svsvvt++++ +qga+++++al+++pgv +s +gg  +++ is+RG  + +  ++++DG++++ +++g+ ++ +idp+ ier++v++Gp+salyG
  CTQ28737.1  64 TTAQSVSVVTRQQMADQGANTISQALEYTPGVYSSFGGGATRFDAISLRGYHGgDVDNLFLDGMRLM-SDGGSHNVLQIDPWFIERVDVIRGPSSALYG 161
                 799*******************************99999999*********664788899*****97.578888888********************** PP

                 STGSSEE CS
        Plug 102 sdaigGv 108
                 ++ +gGv
  CTQ28737.1 162 QSVPGGV 168
                 ******8 PP

>> DUF560  Protein of unknown function (DUF560)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0003       1.8     115     171 ..     191     246 ..     178     256 .. 0.83
   2 ?   -2.9   0.1      0.59   3.5e+03     153     180 ..     402     429 ..     396     458 .. 0.64
   3 !    9.2   0.0   0.00012      0.72     116     154 ..     559     598 ..     536     607 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0003
      DUF560 115 skasGvrlslsywlsekwqlstsleyekeryterkrldgnqklvsasllylpnakqy 171
                 ++++G+++++   ++++w +    +       + ++   +++ +s sll++p++++ 
  CTQ28737.1 191 QNTKGAAFDYTDAINDQWAWRLIGMTRSSDT-QYDHTREERYAISPSLLWQPDSDTS 246
                 5789*************99988776554443.44888889************99875 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.59
      DUF560 153 gnqklvsasllylpnakqyfflGldfsr 180
                 g  ++  ++++y ++++++++  + + +
  CTQ28737.1 402 GYTAQTGHTVTYSDDNNRRYYQTGLYLQ 429
                 5555556666666655555554443333 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00012
      DUF560 116 kasGvrlslsywlsekwqlstsleyekeryter.krldgn 154
                 +++Gv+l+ ++++++++ + +s+++++ r++++ +  d+n
  CTQ28737.1 559 HSQGVELEAHHQITPQLSTIASYTWNRLRFQDTkDGTDNN 598
                 678***************************6664555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4806.13
//
Query:       CTQ28738.1  [L=203]
Description: lytic murein endotransglycosylase E [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-28   97.7   0.0    4.1e-28   97.4   0.0    1.1  1  SLT              Transglycosylase SLT domain
  ------ inclusion threshold ------
      0.036   14.7   0.0      0.073   13.7   0.0    1.5  1  Transglycosylas  Transglycosylase-like domain
       0.13   11.5   0.3       0.54    9.4   0.1    1.9  2  SLT_2            Transglycosylase SLT domain
       0.15   12.1   0.5        1.8    8.6   0.2    2.6  3  Pollen_allerg_1  Pollen allergen


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.0     9e-32   4.1e-28       3     116 ..      43     168 ..      41     169 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.4 bits;  conditional E-value: 9e-32
                 HHHHHHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT.....-SHHHHCSHHHHHHHHHHHHHHHHHTTTT.......HHHH CS
         SLT   3 iikaekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvk.....lsedelldPeknisagakyLkslykqyng.......slll 89 
                 ++ka  ++gv+p+l++ai++ ESg+np +vsksgavGLmQ+ pst +r+++r +     +s++el++Pe+nis+ga+yL+ l ++           +++
  CTQ28738.1  43 SEKAGAAWGVDPQLITAIIAIESGGNPAVVSKSGAVGLMQLKPSTSGRDVYRRMgwrgePSVSELKNPERNISMGAAYLSILENGPLAgikdpqvMRYA 141
                 578999*********************************************9999**99*************************99999********** PP

                 HHHHHHH-HHHHHHTTHSSHHHHHHHH CS
         SLT  90 alaAYNaGegtvkkakkevkkkekkkl 116
                 ++++Y++G+g++ ++++++++ +++++
  CTQ28738.1 142 VVVSYANGAGALLRTFSSNRQDAIEEI 168
                 *******************99988775 PP

>> Transglycosylas  Transglycosylase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.6e-05     0.073       9      37 ..      59      87 ..      53      98 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.6e-05
                     HHHHHHHSS-TT-TTSSSEBTTTTBEHHH CS
  Transglycosylas  9 aiAqcEsggnwaintgnGyyGglqfsqst 37
                     ai + Esggn a+++ +G+ G +q+++st
       CTQ28738.1 59 AIIAIESGGNPAVVSKSGAVGLMQLKPST 87
                     67889*********************998 PP

>> SLT_2  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00012      0.54      78      99 ..      44      65 ..      33      68 .. 0.87
   2 ?   -0.7   0.0      0.15   6.8e+02     151     165 ..      73      87 ..      67      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00012
       SLT_2 78 ariekeyGVpaeiivAiwgvEt 99
                +++ + +GV++++i+Ai+ +E+
  CTQ28738.1 44 EKAGAAWGVDPQLITAIIAIES 65
                788999***************9 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.15
       SLT_2 151 SwaGamGltQFmPss 165
                 S  Ga+Gl+Q  Ps+
  CTQ28738.1  73 SKSGAVGLMQLKPST 87 
                 789*******99986 PP

>> Pollen_allerg_1  Pollen allergen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2    0.0004       1.8      29      56 ..      31      56 ..      29      75 .. 0.80
   2 ?   -2.7   0.0       1.4   6.2e+03      20      35 ..      72      89 ..      59      97 .. 0.71
   3 ?    0.5   0.0      0.14   6.3e+02      13      26 ..     140     153 ..     133     155 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0004
  Pollen_allerg_1 29 VevkqggsseWtpmsrnwGavWqlnssp 56
                     V vk++   +W+p s++ Ga W ++ ++
       CTQ28738.1 31 VPVKRAM--QWMPISEKAGAAWGVDPQL 56
                     7788664..6************998655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.4
  Pollen_allerg_1 20 vggagdisaVevkqg..g 35
                     v ++g +  +++k +  g
       CTQ28738.1 72 VSKSGAVGLMQLKPStsG 89
                     556777888888877443 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.14
  Pollen_allerg_1  13 lavlvenvggagdi 26 
                       av+v++ +gag +
       CTQ28738.1 140 YAVVVSYANGAGAL 153
                      69*********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1474.46
//
Query:       CTQ28739.1  [L=304]
Description: L,D-carboxypeptidase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-30  103.8   0.0    1.3e-29  103.2   0.0    1.3  1  Peptidase_S66C  LD-carboxypeptidase C-terminal domain
    5.9e-23   81.3   0.0    9.4e-23   80.6   0.0    1.3  1  Peptidase_S66   LD-carboxypeptidase N-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_S66C  LD-carboxypeptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   1.5e-33   1.3e-29       1     124 []     169     285 ..     169     285 .. 0.91

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 1.5e-33
                     EEEEEEEEHHHHHCCTTSTTS---TT..EEEEEE--TTHHHHHHHHHHHHCTSTTGGG--EEEEEE--...G...CC...---HHHHHHHHHT-G CS
  Peptidase_S66C   1 eGrliGGnlsvlasllgtpylpekdlkgkILflEdvsespyridrmLtqlkeagvldkvkGivlGrftkp.eekeeeeekeeykealeevlaeil 94 
                     eG+l+GGnl++l+sl+gtp+lp    ++ IL++Ed++e+p r++rmL ql ++gvl   k++++G+ft   +  ++ ++  +    l +v++   
      CTQ28739.1 169 EGTLWGGNLAMLTSLIGTPWLP--AIRDGILVVEDINEHPFRVERMLLQLLHSGVLAAQKAVIFGSFTGSaP--NDYDAGYD----LPQVFDYLR 255
                     79********************..7899****************************************6632..23323455....999999999 PP

                     GGTTS-EEEEESESSSBS---EEETSEEEE CS
  Peptidase_S66C  95 edlkiPvlynldiGHtspnltlplGakael 124
                     ++l +P + +l++GH + ++tlplGa+a+l
      CTQ28739.1 256 QQLPLPLISGLEFGHEQRTVTLPLGARARL 285
                     ***************************997 PP

>> Peptidase_S66  LD-carboxypeptidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0     1e-26   9.4e-23       3     121 .]       6     126 ..       5     126 .. 0.88

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 1e-26
                    EE-SSS-GGGSSH.HHHHHHHHHHHHCTEEEEEGCTC--TTTTCSS-HHHHHHHHHHHHC-T.TECEEEES--SS-CHHCHHHH-HCCHHC....S CS
  Peptidase_S66   3 ivapSsglkkeeekeeleraievleelglevvlgksaaksagylagtdeeRaadLnealadp.eikaiicarGGygaarllpyldfdaikk....n 93 
                    +vapS+++ +   +++ +r++e+l++ g+ev +++ + ++++++agt+ eR+ad+n++++ p   ++++++rGGyga+rllp++d++ + +     
     CTQ28739.1   6 LVAPSGYCIN---QQAAARGVERLQQAGHEVAHQQVIPRRQQRFAGTEHERLADINQLAQLPgRNRIVLAVRGGYGASRLLPHIDWQGLVArqqrD 98 
                    79***99853...4699***************9998877888******************973578999*****************9443334559 PP

                    --EEEE-CCHHHHHHHHHHCHTBSEEE- CS
  Peptidase_S66  94 pkiliGySDiTalhlalyaktglvtlhg 121
                    p +++G+SD+Ta++  l a  +++t+ g
     CTQ28739.1  99 PLLICGHSDFTAIQSGLLAMGNVITFSG 126
                    9*****************9878889976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2401.79
//
Query:       CTQ28740.1  [L=577]
Description: putative cation/proton antiporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-59  199.8  46.0    7.2e-59  199.5  46.0    1.1  1  Na_H_Exchanger   Sodium/hydrogen exchanger family
    5.7e-11   42.1   0.0    1.1e-10   41.2   0.0    1.5  1  TrkA_C           TrkA-C domain
    4.2e-10   39.5   0.1    7.4e-10   38.7   0.1    1.4  1  CorC_HlyC        Transporter associated domain


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.5  46.0   1.2e-62   7.2e-59       7     380 ..      15     388 ..       9     389 .. 0.94

  Alignments for each domain:
  == domain 1  score: 199.5 bits;  conditional E-value: 1.2e-62
                     HHHHHHH....HHHHTTSXHHHHHHHHHHHHTTTTTS.......HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   7 lallvgl....larrlklpeivgliiaGlllGpsglg.l.iepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliG 95 
                     +++++ +    +++rl++p +v+++++G+l G  g g + +++      ++s+l l ++l++ G++++ +++r  l+++l la++gvlit +l+G
      CTQ28740.1  15 VLVTCSIllssFSSRLGIPILVIFLAIGMLAGIDGIGgIpFDN-YPFAYMVSNLALAVILLDGGMRTQASSFRVALWPALSLATVGVLITSALTG 108
                     333333335534*************************433444.6************************************************** PP

                     HHHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHHHHHHHH CS
  Na_H_Exchanger  96 lllylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllllliflvvavgg 190
                     +++++  +++++l+e+ll+gai+  td+++v ++l   + ++er+g++l+ es+ nD +av+l+  l++++  +++++  ++++++ ++  +++g
      CTQ28740.1 109 MMAAW--LFKLDLIEGLLIGAIVGSTDAAAVFSLL-GGKGLNERVGSTLEIESGSNDPMAVFLTITLIEMI--QQHQTGLSWMFAVHIIQQFGLG 198
                     ****9..79**************************.99999******************************..888888888999999******* PP

                     HHHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTT..HHHHHHHHHHHHHHHHHHHHHHHHSXH CS
  Na_H_Exchanger 191 lllglvigwllrlitrftdddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnk..lseklesfreglfnplfFvlvGlsldl 283
                     +++gl  g+ll  ++ ++   + l++ll+l   +++++++++l+ sgil++ l+G +l++ + +n+  + ++++ ++ +l+ +++F+++Gl + +
      CTQ28740.1 199 IAIGLGGGYLLLQMINRIVLPAGLYPLLALSGGIMIFAVTTSLDGSGILAVYLCGFLLGNRPIRNRhgILQNFDGLA-WLAQIAMFLVLGLLVTP 292
                     **********999999999****************************************9999999899********.***************** PP

                     HHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTX.SSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTT.SSTTTCSTSXHHHHHHHHHH CS
  Na_H_Exchanger 284 kvlnnhlsvlilvllilvaillgrilavflllrll.glslrealiigfgglqrgavalalaalgpalgllarel.yallivvvlftvlvqGlslk 376
                     + l   +  ++++ll+ ++i+++r+l+vf+ l  + g++lre+++i++ gl rgav ++la++  ++gl ++ l ++++++vvl+++l+qG+sl+
      CTQ28740.1 293 SDLL--PIAIPALLLSMWMIFIARPLSVFAGLLPFrGFNLRERVFISWVGL-RGAVPIILAVFPMMAGLDNARLfFNVAFFVVLVSLLLQGTSLS 384
                     ***8..************************9999989**************.******************************************9 PP

                     HHHH CS
  Na_H_Exchanger 377 pllk 380
                     +  k
      CTQ28740.1 385 WAAK 388
                     9766 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   1.8e-14   1.1e-10       6      69 ..     421     483 ..     417     484 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.8e-14
                 EE--GGGTTSBHHHHTHHHHS-EEEEEE-T-EEES--TT-B--TT-EEEEEEEHHHHHHHHHHH CS
      TrkA_C   6 vpagsplvGktlkelnlrargvlvvairRggeliipsgdtvLeeGDvllvvgspsdlaelrell 69 
                 ++a+ + +G  l++l ++    +++a+ R+++l++p+g+t+L+eGD+l v+g  +dl +l + +
  CTQ28740.1 421 LGADKWCIGAALRDLHMPP-ETRIAALFRNNVLLHPTGSTRLREGDILCVIGREHDLPALGKMF 483
                 78999**************.************************************99987766 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.1   1.2e-13   7.4e-10       2      79 ..     493     571 ..     492     573 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.2e-13
                 EECTTEEEEETT-BHHHHHHHHTSTTHHC...T-SBHHHHHHHHH-S---TT-EEEEEETTEEEEEEEEETTCEEEEEEEE CS
   CorC_HlyC   2 eldegsylvdGslpldeleeelglelpee...dyeTlgGlllellgriPkegesvevdleglrftVlemdgrrIkkvrvek 79 
                 ++ +g++++d++++  ++++++gl+  ee     ++lg  + +llg  P +g+  +v++ g+ +tV e ++ ++ kv v++
  CTQ28740.1 493 QRFFGDFILDAEARFADVAQIYGLDGGEEfreHQQSLGEVVQQLLGAAPVVGD--QVEFAGMVWTVAEKENDHVLKVGVRV 571
                 56789*******************97776663466******************..66666******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4112.97
//
Query:       CTQ28741.1  [L=356]
Description: alanine racemase 2, PLP-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-68  228.5   0.1      1e-67  228.0   0.1    1.2  1  Ala_racemase_N  Alanine racemase, N-terminal domain
    5.6e-41  139.2   0.2    8.8e-41  138.6   0.2    1.3  1  Ala_racemase_C  Alanine racemase, C-terminal domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.0   0.1   1.1e-71     1e-67       1     219 []       9     217 ..       9     217 .. 0.97

  Alignments for each domain:
  == domain 1  score: 228.0 bits;  conditional E-value: 1.1e-71
                     EEHHHHHHHHHHHHHHSCTTSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTSCSEEEEESC.STGGGHHHHHHTTEEEEE CS
  Ala_racemase_N   1 idldalrhNlrrlralagpgaklmavvKanayghgavevaralaeggadgfgvatleEalelreagitapilvleg.fspeelaalaeydltvtv 94 
                     idl alr+Nl+ +r++a pg++l+avvKanayghg+++v  al  + adgf+  +leEa+ lre+g+++pil+leg f+++ela l +y+lt+ v
      CTQ28741.1   9 IDLLALRQNLQIVRRAA-PGSRLWAVVKANAYGHGVARVWSALS-A-ADGFALLNLEEAILLREQGWKGPILLLEGfFHADELAVLDQYRLTTSV 100
                     89***************.9999*******************888.8.9****************************99***************** PP

                     SSHHHHHHHHHHHHHTTS-EEEEEEBESSSSSSSBSCHHHHHHHHHHHHTTTEEEEEEE-S-SSTTSTSHHHHHHHHHHHHHHHHHHHTTGGGSE CS
  Ala_racemase_N  95 dsleqlealaaaareagkplrvhlkidtgmgRlGftpeeleellealaalpglrleglmtHfasadepdeeteaqlarfeealeelekaglrppv 189
                     +s +q++al++a+   + pl++ lk+++gm+RlGf pe + +++++l+a +++    lm+Hfa a++p+  + + ++r+e+a+e l+   +r   
      CTQ28741.1 101 HSNWQIKALQQAKL--RAPLDIYLKVNSGMNRLGFMPERVHTVWQQLRAISNVGEMTLMSHFAEAENPQ-GIVEPMRRIEQAAEGLD--CPR--- 187
                     ************98..9**************************************************99.****************6..566... PP

                     EEEESHHHHHHSG.GGTTEEEESGGGGT-SS CS
  Ala_racemase_N 190 vslanSaaillaa.ahfdmvRpGialyGlsp 219
                      slanSaa+l+++ ahfd+vRpGi+lyG+sp
      CTQ28741.1 188 -SLANSAATLWHPeAHFDWVRPGIVLYGASP 217
                     .***********769**************98 PP

>> Ala_racemase_C  Alanine racemase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.2   9.8e-45   8.8e-41       1     123 [.     232     354 ..     232     355 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 9.8e-45
                     SEEEEEEEEEEEEESTTSEESGGGSEE-SSSEEEEEES--GGGTCGGGGT..TEEEETTEEEEEESEE-SSEEEEEECTSTT--TT-EEEEEEET CS
  Ala_racemase_C   1 vmtlkarviqvkevkagegvgYgatyvaerdtriavvpiGYaDGlprals..gevlingkrvpvvGrvcMDqlmvdlteveevkvgdevvllgeg 93 
                     vmtl++++i v+++++ge++gYg+ y++++++ri++v++GYaDG+pr +    +vl++g r+ +vGrv+MD+l vdlt ++++ +g  v+l+g+ 
      CTQ28741.1 232 VMTLRSEIIGVQNLRPGEAIGYGGLYRTTQEQRIGIVACGYADGYPRVAPsgTPVLVDGVRTTTVGRVSMDMLAVDLTPCPQAGIGAPVELWGK- 325
                     8**********************************************654355****************************************8. PP

                     EEEEHHHHHHHHTSEHHHHHHTSHTTSEEE CS
  Ala_racemase_C  94 eeitveelaeaagtisyeiltrlskrvprv 123
                      ei+++++a+ +gt+ ye++++l++rvp v
      CTQ28741.1 326 -EIKIDDVAASSGTVGYELMCALAPRVPVV 354
                     .8*************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       218  (0.0121591); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2715.90
//
Query:       CTQ28742.1  [L=432]
Description: D-amino acid dehydrogenase, small subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-73  246.2   1.2    8.4e-73  246.0   1.2    1.1  1  DAO              FAD dependent oxidoreductase
    4.6e-08   33.5   0.0    4.3e-05   24.0   0.0    2.4  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
    1.4e-07   31.7   0.1    4.8e-06   26.7   0.1    2.6  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    2.8e-07   30.0   0.1    0.00032   20.0   0.1    2.2  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      8e-07   28.5   1.2     0.0086   15.2   0.0    2.2  2  FAD_binding_2    FAD binding domain
    1.4e-06   28.1   0.0      2e-05   24.3   0.0    2.2  2  ApbA             Ketopantoate reductase PanE/ApbA
      4e-06   25.8   0.1      0.041   12.6   0.0    2.3  2  HI0933_like      HI0933-like protein
    2.2e-05   23.9   0.5     0.0018   17.6   0.2    2.2  2  FAD_binding_3    FAD binding domain
    0.00012   21.4   0.0     0.0002   20.7   0.0    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
     0.0003   20.2   0.0       0.27   10.5   0.0    2.2  2  Amino_oxidase    Flavin containing amine oxidoreductase
    0.00046   19.8   0.0    0.00079   19.0   0.0    1.3  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
     0.0005   19.5   1.0       0.35   10.1   0.8    2.7  2  FAD_oxidored     FAD dependent oxidoreductase
    0.00088   18.2   0.1        0.8    8.5   0.0    2.2  2  Trp_halogenase   Tryptophan halogenase
     0.0025   17.7   0.1      0.005   16.7   0.1    1.5  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.007   16.6   0.0      0.014   15.7   0.0    1.4  1  TrkA_N           TrkA-N domain
  ------ inclusion threshold ------
      0.041   12.9   0.4       0.33   10.0   0.2    2.0  2  GIDA             Glucose inhibited division protein A
      0.043   14.4   0.0        0.1   13.2   0.0    1.6  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.057   13.9   0.0       0.14   12.7   0.0    1.7  1  XdhC_C           XdhC Rossmann domain
      0.084   13.1   0.0       0.16   12.2   0.0    1.5  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.087   12.0   0.1        1.4    8.1   0.0    2.1  2  Thi4             Thi4 family
        0.1   11.1   0.0        2.4    6.6   0.0    2.0  2  GDI              GDP dissociation inhibitor
       0.14   12.2   0.0       0.24   11.4   0.0    1.4  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
       0.16   12.1   0.0        0.3   11.2   0.0    1.4  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
       0.16   11.3   0.0        0.3   10.4   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
        0.2   12.1   0.0       0.32   11.5   0.0    1.3  1  NAD_binding_7    Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.0   1.2   1.2e-75   8.4e-73       1     352 []       2     397 ..       2     397 .. 0.93

  Alignments for each domain:
  == domain 1  score: 246.0 bits;  conditional E-value: 1.2e-75
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH.......................................... CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas.......................................... 55 
                 +vvi G+G++G++ A++L+++g  Vt++++++ +++++S +n+g++++g++ +p+a                                           
  CTQ28742.1   2 RVVILGSGVVGVASAWYLSQAGhdVTVIDRQPGPAEETSAANAGQISPGYA-APWAApgvplkaikwmfqrhaplaigldgtsfqlkwmwqmlrncdtr 99 
                 59*******************99***************************8.9998899**************************************** PP

                 .......HHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTST....TTSEEEEETTEEEE CS
         DAO  56 .......elarlslealeelreleeelgididyrrtGllslaadeeelealdkllallleagldaelldaeevrelepalp....gllgalfypdtgqv 143
                        +++rl+++++++l++l +++gi+ + r+ G+l+l++++++ e+  + +a l++ag++++ll+a++++e+epal+    +l+g+l  p++ + 
  CTQ28742.1 100 hymenkgRMVRLAEYSRDCLKALRDTTGIQYEGRQGGTLQLFRTAKQYENATRDIAVLEDAGVPYQLLEAKRLAEVEPALAevshKLTGGLRLPNDETG 198
                 *******************************************9999***99******99**********99******9334678************** PP

                 EHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEE.EEEEEEEE--GGGHH.HHHTTCTT.TSEEEEEEEEEEEEEECCTHSTGSGC CS
         DAO 144 dpakltaalaraaealGveilegtevtgleeedgkvwgverttpgen.daadavVnaaGawsd.llgllkel.dlpispvrgqvlvlkplseklvspaa 239
                 d++ +t  la+ ae++Gv+++++t v +l +e+++++gv+    g +  + da V+a G +s+  l   k l d+p++p++g++l++ p+ +     + 
  CTQ28742.1 199 DCQLFTTRLAAMAEQAGVTFRFNTAVDALLHEGDRIAGVK--C-GDEiIKGDAYVMAFGSYSTaML---KGLvDIPVYPLKGYSLTI-PIAQ-----ED 285
                 ****************************9888899****4..2.33334569*********97555...666688************.9866.....46 PP

                 SEEEEEEEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGGGCGEEE..EEEEEEE.ETTSSEEEEEEETEEEEEEEEECT CS
         DAO 240 ilpvpetdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedidellealrklfPqlgdvlr..kwaGlrp.lpdglpligetpgvkglylatGhs 335
                 ++pv  t+ d+++ +++ r d+r++vGg a e  g++  +  + +++ l   +r+lfP+ g+v++   w+Glrp +pdg p++g+t  +k+l+l+tGh+
  CTQ28742.1 286 GAPVS-TILDETYKIAITRFDQRIRVGGMA-EIVGFNK-ALLQPRRETLEMVVRDLFPRGGHVEQatFWTGLRPmTPDGTPVVGRTA-YKNLWLNTGHG 380
                 88998.99999999****************.*******.99999***************99999667*******55*********86.*********** PP

                 TTHHHHHHHHHHHHHHH CS
         DAO 336 ghGltlapatGkllael 352
                   G+t+a+++G+l+++l
  CTQ28742.1 381 TLGWTMACGSGQLISDL 397
                 **************986 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   6.1e-08   4.3e-05       1      35 [.       2      36 ..       2      46 .. 0.90
   2 ?    7.0   0.0     0.012       8.6      44      78 ..     205     239 ..     200     242 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 6.1e-08
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll 35
                +vv++G+G++g+  A +l++ g++Vtv++r++ + 
  CTQ28742.1  2 RVVILGSGVVGVASAWYLSQAGHDVTVIDRQPGPA 36
                79****************************99776 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.012
                 HHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  44 kilqeklekngievllntkveeiegsedgvesvkl 78 
                 ++l+   e+ g+++++nt v ++ +++d + +vk+
  CTQ28742.1 205 TRLAAMAEQAGVTFRFNTAVDALLHEGDRIAGVKC 239
                 5667778899**************99999888876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   6.7e-09   4.8e-06       1      31 [.       5      35 ..       5      64 .. 0.89
   2 ?    1.9   0.0      0.36   2.6e+02      18      36 ..     297     315 ..     289     330 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 6.7e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31
                   I+G+G+ G + A++L++ag+dv+++++++++
     CTQ28742.1  5 ILGSGVVGVASAWYLSQAGHDVTVIDRQPGP 35
                   89**************************987 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.36
                    CTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  18 agfdvlllekrdrlGGraa 36 
                    +++ ++ +++r r+GG a 
     CTQ28742.1 297 YKIAITRFDQRIRVGGMAE 315
                    4778999*********986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   4.4e-07   0.00032     144     178 ..       2      36 ..       1      51 [. 0.72
   2 !    8.1   0.0    0.0019       1.4     186     237 ..     204     255 ..     141     309 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.4e-07
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  r+v+ G+G++Gv  A +l+++g++vt++++ + + 
   CTQ28742.1   2 RVVILGSGVVGVASAWYLSQAGHDVTVIDRQPGPA 36 
                  57788888888888888888888888888777665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0019
                  HHHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 186 saaleealekeGvevklgtsvkeidgngekle.vvledgeeidadlvvvavGv 237
                  + +l++  e+ Gv+++++t v ++  +g+++  v+ +d+  i+ d  v+a G 
   CTQ28742.1 204 TTRLAAMAEQAGVTFRFNTAVDALLHEGDRIAgVKCGDEI-IKGDAYVMAFGS 255
                  5566777788899999999999999888877755555544.888888888885 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.4   0.00011     0.081       2      41 ..       3      42 ..       2      52 .. 0.84
   2 !   15.2   0.0   1.2e-05    0.0086      89     181 ..     150     241 ..     125     271 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG- CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggataws 41
                   v++ GsG+ G a+A  +++aG++v+v++  +    +t ++
     CTQ28742.1  3 VVILGSGVVGVASAWYLSQAGHDVTVIDRQPGPAEETSAA 42
                   9***************************988655544444 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.2e-05
                    HHHHHHHHHHTT----BCCTS..SB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEE CS
  FAD_binding_2  89 apeavdeLeelgvpfsrtedg..pvdvrelGglsatartlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedgrvtGavven 181
                    a + ++ Le+ gvp++  e    +     l ++s++ +t+   ++ ++++ ++ +    rl++ a++agv+f+++t++d+L++e++r+ G+ + +
     CTQ28742.1 150 ATRDIAVLEDAGVPYQLLEAKrlAEVEPALAEVSHK-LTG--GLRLPNDETGDCQLFTTRLAAMAEQAGVTFRFNTAVDALLHEGDRIAGVKCGD 241
                    556666677777777772222221111122333333.222..23333366677777788999999999**********************98874 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.8e-08     2e-05       1      35 [.       3      38 ..       3      50 .. 0.89
   2 ?    1.3   0.0      0.34   2.4e+02      12      57 ..     202     249 ..     200     262 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.8e-08
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlea 35
                ++ilG+G +G   a++L++ag+dvt+i+r++  +e+
  CTQ28742.1  3 VVILGSGVVGVASAWYLSQAGHDVTVIDRQPgPAEE 38
                68****************************988887 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.34
                 HHHHHHHH.HTHC.EEEE-SCHHHHHHHHHCEEEEETT.CEEEEEECEE CS
        ApbA  12 llaakLak.agad.vtlilrsrrlealkknGlrltseg.geeilrppea 57 
                 l+  +La+ a +  vt+ ++++ ++al ++G r+ +++ g+ei++ ++ 
  CTQ28742.1 202 LFTTRLAAmAEQAgVTFRFNTA-VDALLHEGDRIAGVKcGDEIIKGDAY 249
                 6777888844444788888888.***************99999987765 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1    0.0002      0.14       2      37 ..       2      37 ..       1      47 [. 0.88
   2 !   12.6   0.0   5.8e-05     0.041     115     168 ..     207     259 ..     194     263 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklgr 37
                 +v+++G G  G+  A  ++++g++V+++++++ +++
   CTQ28742.1  2 RVVILGSGVVGVASAWYLSQAGHDVTVIDRQPGPAE 37
                 69***************************9987765 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.8e-05
                  HHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-G CS
  HI0933_like 115 llkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiP 168
                  l + +++agv++r +t+v ++ +e d++  vk+ ++e ++ d+ v+A G+ S +
   CTQ28742.1 207 LAAMAEQAGVTFRFNTAVDALLHEGDRIAGVKC-GDEIIKGDAYVMAFGSYSTA 259
                  6778899**************************.****************9987 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   2.5e-06    0.0018       3      40 ..       2      39 ..       1      47 [. 0.89
   2 ?    4.4   0.0     0.025        18     108     139 ..     204     235 ..     147     242 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.5e-06
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp 40
                    V+I G+G +G+ +a  Ls+aG +v++++++   ++++
     CTQ28742.1  2 RVVILGSGVVGVASAWYLSQAGHDVTVIDRQPGPAEET 39
                   69****************************99887766 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.025
                    HHHHHHHHHHHTEEETCSEEEECCEECCCCCC CS
  FAD_binding_3 108 eriLvehaeerglqvrfktevesleqdeegvt 139
                    +  L++ ae++g+++rf+t v +l+++++ ++
     CTQ28742.1 204 TTRLAAMAEQAGVTFRFNTAVDALLHEGDRIA 235
                    56689999*******************99876 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.8e-07    0.0002      30      72 ..       2      44 ..       1      73 [. 0.90

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.8e-07
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTT CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslga 72
                 +v+++G Gv+G+++++  ++ g +Vtv+D +p  +e+ ++ +a
   CTQ28742.1  2 RVVILGSGVVGVASAWYLSQAGHDVTVIDRQPGPAEETSAANA 44
                 79*****************************998888777554 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0026       1.9       3      23 ..      12      32 ..      11      35 .. 0.89
   2 !   10.5   0.0   0.00038      0.27     214     263 ..     208     256 ..     182     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0026
                   HHHHHHHHHHTTEEEEEEESS CS
  Amino_oxidase  3 GLaaArqLlsaGfdVtvlEar 23
                   G a A++L++aG+dVtv+  +
     CTQ28742.1 12 GVASAWYLSQAGHDVTVIDRQ 32
                   889**************9765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00038
                    HHHHHTTTTEEEETSEEEEEEEEETTC.EEEEETTSTEEEESEEEE-S-HH CS
  Amino_oxidase 214 ealaeelrgldirlntrVkeikregdg.vtvtledgevveaDaVvvTvplg 263
                     a+ae + g+++r+nt V  + +egd   +v++   e +++Da+v++   +
     CTQ28742.1 208 AAMAE-QAGVTFRFNTAVDALLHEGDRiAGVKCG-DEIIKGDAYVMAFGSY 256
                    46666.*****************88886888774.3445*******97765 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.1e-06   0.00079       1      32 [.       1      32 [.       1      48 [. 0.90

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.1e-06
                    SEEEEE--STTHHHHHHHHHHCTSEEEEE-S- CS
  UDPG_MGDP_dh_N  1 mkisviGlGYvGlvtaavlaeighevigvDid 32
                    m+++++G+G vG+ +a  l+++gh+v+++D +
      CTQ28742.1  1 MRVVILGSGVVGVASAWYLSQAGHDVTVIDRQ 32
                    89****************************86 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.8   0.00049      0.35       2     163 ..       3     171 ..       2     189 .. 0.73
   2 !    6.3   0.0    0.0071       5.1      83     126 ..     197     240 ..     173     252 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00049
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaeeqvvtgiareflerlrqrgga.rlkkrskwntfepevakavleeml 97 
                   vv+ G+g+ Gva A    +aG  v ++++++     ++++  + +   +a+ +++ g+  + ++ + qr +   ++ +   ++f+ + + ++l +  
    CTQ28742.1   3 VVILGSGVVGVASAWYLSQAGHDVTVIDRQPGPAEETSAANAGQISPGYAAPWAAPGVPLKAIKWMFQRHAPlAIGLDG--TSFQLKWMWQMLRNCD 97 
                   9*****************************9988888888888888888777888888888888887755543333222..2477777776666655 PP

  FAD_oxidored  98 .....aeagvtvllntrlvevekegkriesvtveske.g..rktirAkvfiDATgdGdlaalaGvpyrvGresr 163
                        +++g  v l +  +++ k  ++ ++++ e ++ g  +   +Ak +  AT d  +++ aGvpy++ + +r
    CTQ28742.1  98 trhymENKGRMVRLAEYSRDCLKALRDTTGIQYEGRQgGtlQLFRTAKQYENATRDIAVLEDAGVPYQLLEAKR 171
                   55554555666666666677777655689999999887674444578999999999999999999998755555 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0071
  FAD_oxidored  83 tfepevakavleemlaeagvtvllntrlvevekegkriesvtve 126
                   t + + +++ l +m ++agvt  +nt +++   eg+ri +v++ 
    CTQ28742.1 197 TGDCQLFTTRLAAMAEQAGVTFRFNTAVDALLHEGDRIAGVKCG 240
                   4677788889999****************************984 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0021       1.5       1      33 [.       2      31 ..       2      38 .. 0.92
   2 !    8.5   0.0    0.0011       0.8     152     209 ..     199     255 ..     196     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0021
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlves 33
                    ++vi+G G  G  +A +l++a+   ++vt+++ 
      CTQ28742.1  2 RVVILGSGVVGVASAWYLSQAG---HDVTVIDR 31
                    69********************...99**9976 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0011
                     -HHHHHHHHHHHHHHCT-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGG CS
  Trp_halogenase 152 daalyakfLrrvaearGvtrvegkvvevqldedgrveslrledgreveadlfiDcsGf 209
                     d +l+   L ++ae++Gvt +  + v++ l+e +r+++++  d+  +++d ++ + G 
      CTQ28742.1 199 DCQLFTTRLAAMAEQAGVTFRFNTAVDALLHEGDRIAGVKCGDEI-IKGDAYVMAFGS 255
                     66899999********************************96654.888888877665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1     7e-06     0.005       2      40 ..       3      41 ..       2      51 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7e-06
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekale 40
                v ++G+G++G   a  + +ag++V+++d+++  +e+  +
  CTQ28742.1  3 VVILGSGVVGVASAWYLSQAGHDVTVIDRQPGPAEETSA 41
                89***************************9988877665 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.9e-05     0.014       1      39 [.       3      41 ..       3      50 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-05
                EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelre 39
                ++i+G G vG + a +Ls+ g+ dv+vid+++  +ee ++
  CTQ28742.1  3 VVILGSGVVGVASAWYLSQaGH-DVTVIDRQPGPAEETSA 41
                79*****************555.8********99998765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   0.00046      0.33       2      30 ..       3      31 ..       2      50 .. 0.81
   2 ?    0.7   0.0       0.3   2.1e+02     115     154 ..     221     259 ..     202     267 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00046
                EEEE-SSHHHHHHHHHHHHTT--EEEEES CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLith 30
                v+++G G  G++ A+ ++++G++v+ i  
  CTQ28742.1  3 VVILGSGVVGVASAWYLSQAGHDVTVIDR 31
                99**********************99933 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.3
                 ES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT- CS
        GIDA 115 eeeveeliveekkvkgvvtedgetikakavviatGtflkg 154
                 +  v+ l+ e ++++gv+   +e+ik +a v+a G+++++
  CTQ28742.1 221 NTAVDALLHEGDRIAGVKCG-DEIIKGDAYVMAFGSYSTA 259
                 45688888888999999875.5789***********8765 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00014       0.1       1      45 [.       2      42 ..       2      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00014
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHH CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaee 45
                   ++ i+G+G +g a a  l++ag   h+++v+ +r+p  aee+ ++
     CTQ28742.1  2 RVVILGSGVVGVASAWYLSQAG---HDVTVI-DRQPGPAEETSAA 42
                   6889******************...****99.*****99998765 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00019      0.14       1      45 [.       3      53 ..       3      84 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00019
                EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE......- CS
      XdhC_C  1 lvifGaghvaqalarlaaalgfrvtvvdpreefatkerfpeade......t 45
                +vi+G g v+ a a +++++g +vtv+d ++  a+++++++a +      +
  CTQ28742.1  3 VVILGSGVVGVASAWYLSQAGHDVTVIDRQPGPAEETSAANAGQispgyaA 53
                69*****************************76766666655445555550 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00023      0.16       1      42 [.       3      41 ..       3      50 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00023
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHC CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaa 42
                     v+i+G+G vG a a++l++ ++    +tv+dr+   +e++ a
       CTQ28742.1  3 VVILGSGVVGVASAWYLSQAGHD---VTVIDRQPGPAEETSA 41
                     89******************985...******9988777665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0     0.002       1.4      19      50 ..       2      32 ..       1      38 [. 0.90
   2 ?    1.6   0.0       0.2   1.4e+02      95     136 ..     199     238 ..     194     248 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.002
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailers 50
                 vvi G+G  G+++a yl+++ +  v++++r+
  CTQ28742.1  2 RVVILGSGVVGVASAWYLSQA-GHDVTVIDRQ 32
                59******************9.9999999886 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.2
                 EHHHHHHHHHHHHHTSTTEEEEESEEEEEEEEETBTEEEEEE CS
        Thi4  95 daalftstllskvlqlanvkllnavaveDlivregegvaGvv 136
                 d  lft++l++ + q a+v     +av+ l ++eg+++aGv 
  CTQ28742.1 199 DCQLFTTRLAAMAEQ-AGVTFRFNTAVDAL-LHEGDRIAGVK 238
                 567899999998888.99998888888655.6677*****95 PP

>> GDI  GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.069        49       7      47 ..       3      43 ..       1      52 [. 0.87
   2 ?    6.6   0.0    0.0033       2.4     238     286 ..     208     256 ..     198     266 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.069
                EEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE- CS
         GDI  7 vivlGtGlkecilsGllsvdgkkvlhldrndyyGgesaslt 47
                v++lG+G+     +  ls  g+ v ++dr++    e+++ +
  CTQ28742.1  3 VVILGSGVVGVASAWYLSQAGHDVTVIDRQPGPAEETSAAN 43
                89********99999***************98777776655 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0033
                 HHHHHHTT-EEETS--ECEEEE-TTS-EEEEEETTEEEEECE.EEE-GGG CS
         GDI 238 arlsaiyGGtymlnkpvdevvldedgkvvGvkseeevakakk.vicdpsy 286
                 a ++   G t+ +n+ vd ++  e +++ Gvk ++e++k +  v++  sy
  CTQ28742.1 208 AAMAEQAGVTFRFNTAVDALLH-EGDRIAGVKCGDEIIKGDAyVMAFGSY 256
                 344445799*****99988877.999*************98625555666 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00033      0.24       2      40 ..       3      41 ..       2      54 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00033
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHH CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvreeelieeine 40
                    + +lG+G  G a A  l+++gh+v+++ r++  +ee ++
      CTQ28742.1  3 VVILGSGVVGVASAWYLSQAGHDVTVIDRQPGPAEETSA 41
                    89***************************9966666544 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00042       0.3       3      43 ..       4      44 ..       2      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00042
                   EEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTE CS
  NAD_binding_2  3 gfiGlGvMGsnmalnllkagykvavynrtkekveelvaega 43
                    ++G Gv G   a  l +ag++v+v++r++  +ee  a++a
     CTQ28742.1  4 VILGSGVVGVASAWYLSQAGHDVTVIDRQPGPAEETSAANA 44
                   5789**************************99999887763 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00042       0.3      38      77 ..       2      41 ..       1      50 [. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00042
                  EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHH CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeee 77
                  +v i+G G +G a a +l++ g +v+++dr++ + ee+++
    CTQ28742.1  2 RVVILGSGVVGVASAWYLSQAGHDVTVIDRQPGPAEETSA 41
                  799****************************998885544 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00045      0.32       9      40 ..       2      33 ..       1      96 [. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00045
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapev 40
                   +v++ G G v+   +  l +ag +vtv++ + 
     CTQ28742.1  2 RVVILGSGVVGVASAWYLSQAGHDVTVIDRQP 33
                   79**************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3366.64
//
Query:       CTQ28743.1  [L=510]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-176  587.6  10.5   1.3e-176  587.4  10.5    1.0  1  SpoVR     SpoVR like protein
  ------ inclusion threshold ------
      0.043   13.9   0.1      0.094   12.8   0.1    1.5  1  P21-Arc   ARP2/3 complex ARPC3 (21 kDa) subunit


Domain annotation for each model (and alignments):
>> SpoVR  SpoVR like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  587.4  10.5  1.5e-180  1.3e-176       1     417 [.      19     450 ..      19     451 .. 0.98

  Alignments for each domain:
  == domain 1  score: 587.4 bits;  conditional E-value: 1.5e-180
       SpoVR   1 deelkeleeakeeieeiakelgLdfypnqfeiitaeqmleaaayvgmPlrysHWsfGkeyeklkksykyglsklaYElViNsdPciaylleeNslvqqk 99 
                 d++++ le++ +e+ ++ak ++Ld+yp+q+e+it+eqm++a+++vgmP++y+HWsfGk++ ++++ yk+g+++laYE+ViNs+Pciayl+eeN++++q+
  CTQ28743.1  19 DWTFELLETYLAEVDRVAKLYRLDTYPHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETEQAYKHGQQGLAYEIVINSNPCIAYLMEENTITMQA 117
                 79************************************************************************************************* PP

       SpoVR 100 lviAHv.ygHndFFknNalFkkttdarkildslalaaerireyeeryGeeeVEklldaalaleel.vdrykrkekkkleeeekrkkereeye.sqvedl 195
                 lv+AH+ ygHn+FFknN+lF+++tda++i+d+l +a+++i+e+eeryG++eVEklld+++al+++ vdrykr++k +l+ee++r+k+reey  sqv+ l
  CTQ28743.1 118 LVMAHAcYGHNSFFKNNYLFRSWTDASSIIDYLIFARKYITECEERYGVDEVEKLLDSCHALMNYgVDRYKRPQKISLQEEKARQKSREEYLqSQVNML 216
                 *******************************************************************************************999***** PP

       SpoVR 196 wrtleekkkkeeeekekeekfpeepeedlllFleknapeLeeWqrdilrivreeaqYFlPQrqtkimNEGwAsywHstilnel....kltdeeileflk 290
                 wrtl++++++++ e+ +  ++p+ep+e+ll+F+eknap Le+Wqr+ilrivr+++qYF+PQ+qt++mNEGwA++wH+tiln+l    k+t++++lefl+
  CTQ28743.1 217 WRTLPKREEEKAIESAR--RYPSEPQENLLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQKQTQVMNEGWATFWHYTILNHLydegKVTERFMLEFLH 313
                 *****888776666666..******************************************************************************** PP

       SpoVR 291 shsgvv......apsksglNPYalGlklfedierrveepteeerekfdkkagegre..klfevrelekDesfirqyLtkelvrelklfslkkkeeeee. 380
                 sh++vv      +p +sg+NPYalG+++f+di+r++++ptee++ +f+++ag+ ++  +l+++++ +kDesfi+q+L+++++r++++f++ +++++++ 
  CTQ28743.1 314 SHTNVVfqppynSPWYSGINPYALGFAMFQDIKRICQSPTEEDKYWFPDIAGS-DWleTLHFAMRDFKDESFISQFLSPKIMRDFRFFTVLDDDHNNYl 411
                 *****************************************************.7778***********************************999988 PP

       SpoVR 381 .veaiidekgykkvrekLlkqltnagl.paiqvedvdle 417
                  ++ai++e+gy+++r+kL++q+++++l p+iqv++vdl+
  CTQ28743.1 412 eISAIHNEEGYREIRNKLSAQYNLSNLePNIQVWNVDLR 450
                 9*************************99********987 PP

>> P21-Arc  ARP2/3 complex ARPC3 (21 kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     1e-05     0.094      49     119 ..     129     201 ..     126     242 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1e-05
     P21-Arc  49 elFranvlfrnfeikgeaDrvLiYlilfisecLkklk..kstskeeaekelatlalenfaiPgdagfpLnsly 119
                 ++F+ n lfr++   ++    Li+   +i+ec ++    +  +  ++ ++l+++++++++ P + + + ++  
  CTQ28743.1 129 SFFKNNYLFRSWTDASSIIDYLIFARKYITECEERYGvdEVEKLLDSCHALMNYGVDRYKRPQKISLQEEKAR 201
                 69**********999988889*************987557888899****************87665544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 4168.84
//
Query:       CTQ28744.1  [L=239]
Description: DNA-binding transcriptional dual regulator of fatty acid metabolism [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-72  240.6   0.0      9e-72  240.3   0.0    1.1  1  FadR_C          FadR C-terminal domain
    2.7e-20   71.8   0.0    5.7e-20   70.7   0.0    1.6  1  GntR            Bacterial regulatory proteins, gntR family
    1.4e-06   28.8   0.0    2.9e-06   27.7   0.0    1.5  2  FCD             FCD domain
     0.0001   22.2   0.0    0.00018   21.4   0.0    1.4  1  HTH_Crp_2       Crp-like helix-turn-helix domain
    0.00014   21.7   0.0    0.00027   20.7   0.0    1.4  1  TrmB            Sugar-specific transcriptional regulator TrmB
      0.002   17.9   1.9      0.059   13.2   0.2    2.8  3  HTH_IclR        IclR helix-turn-helix domain
     0.0042   16.6   0.9     0.0098   15.4   0.1    2.0  3  HTH_24          Winged helix-turn-helix DNA-binding
     0.0059   16.8   0.0      0.011   15.9   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0077   16.3   0.2        0.2   11.8   0.1    2.5  2  HTH_28          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.028   14.6   0.0       0.08   13.2   0.0    1.7  1  PaaX            PaaX-like protein
      0.032   14.6   0.0      0.074   13.4   0.0    1.5  1  Rrf2            Transcriptional regulator
      0.073   13.0   0.0       0.16   11.9   0.0    1.6  1  MarR            MarR family
       0.19   11.3   0.0       0.29   10.7   0.0    1.3  1  Cut8            Cut8, nuclear proteasome tether protein


Domain annotation for each model (and alignments):
>> FadR_C  FadR C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.3   0.0   6.6e-75     9e-72       1     163 [.      72     234 ..      72     235 .. 0.99

  Alignments for each domain:
  == domain 1  score: 240.3 bits;  conditional E-value: 6.6e-75
      FadR_C   1 NnfwetsglniletlirldedkvpelvedllsaRtnisaiyireavknnpekslevlaevkeledkaeafaefDYklfrelafasgnkiYvLilNglkk 99 
                 Nnfwetsglniletl+rld+d+vp+l+++lls+Rtnis+i+ir+a++++p+k+l+vl++++e+ed+a+afae+DY++fr+lafasgn+iY+LilNg+k+
  CTQ28744.1  72 NNFWETSGLNILETLARLDHDSVPQLIDNLLSVRTNISTIFIRTAFRQHPDKALAVLDSAREVEDHADAFAELDYNIFRGLAFASGNPIYGLILNGMKG 170
                 9************************************************************************************************** PP

      FadR_C 100 lYsrvgslyFsneearelalkfYrelkelceeeeaekvaevvrkygkesgkiWkelkkelpenl 163
                 lY+r+g++yFs++ear+lal fY++l ++ce++ +++v e+vr+yg++sg+iW++++k+lp +l
  CTQ28744.1 171 LYTRIGRHYFSSPEARSLALGFYHQLAKVCEAGLHDQVYELVRRYGHDSGEIWHRMQKSLPGDL 234
                 ************************************************************9876 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   4.1e-23   5.7e-20       4      64 .]      11      71 ..       8      71 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 4.1e-23
                HHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  4 qvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                 ++e++ e I+++++ pG++LP+ereL++ +gV+rtt+Re+L+rL+++g++++++g+ t V
  CTQ28744.1 11 FAEEYIIESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKV 71
                57899******************************************************98 PP

>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       8.4   1.2e+04      69      75 ..      49      55 ..      40      70 .. 0.57
   2 !   27.7   0.0   2.1e-09   2.9e-06       2     122 ..     101     215 ..     100     218 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.4
         FCD 69 aelleel 75
                +e+l++l
  CTQ28744.1 49 REVLQRL 55
                2222222 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 2.1e-09
         FCD   2 lyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlalssperleeslaeH 100
                 l+ +R  +    +r+a r+  d  la l+ + e  + a+a      fae+d+   r la a+gnp    +l+ +     r+ r ++sspe ++ +l   
  CTQ28744.1 101 LLSVRTNISTIFIRTAFRQHPDKALAVLDSAREVEDHADA------FAELDYNIFRGLAFASGNPIYGLILNGMKGLYTRIGRHYFSSPEARSLALGFY 193
                 5678888889999999999999888888777777777766......***************************************************** PP

         FCD 101 raildAirardadaAraamrrH 122
                 +++++ ++a+  d++ +++rr 
  CTQ28744.1 194 HQLAKVCEAGLHDQVYELVRRY 215
                 ******************9985 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.3e-07   0.00018      25      54 ..      35      65 ..      23      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.3e-07
                HHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2 25 eelAsmlGltretvsrilseLkreglis.rg 54
                +el++++G+tr t+  +l++L r+g+++ ++
  CTQ28744.1 35 RELSELIGVTRTTLREVLQRLARDGWLTiQH 65
                79************************99532 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     2e-07   0.00027      26      61 ..      35      70 ..      33      73 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2e-07
                CHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTTTE CS
        TrmB 26 deiaeelgvprskvYevLrsLedkGlVerekgrpkl 61
                +e++e +gv r++  evL++L + G+ ++++g+p++
  CTQ28744.1 35 RELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTK 70
                89*******************************997 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2   4.3e-05     0.059      22      49 ..      35      62 ..      33      64 .. 0.95
   2 ?    2.7   0.0     0.079   1.1e+02       5      24 ..      79      97 ..      78     101 .. 0.81
   3 ?   -1.7   0.0       1.8   2.5e+03       3      10 ..     122     129 ..     122     130 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.3e-05
                HHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR 22 selArrtglpkStvhRlLqtLvelGyve 49
                +el++ +g++++t +  Lq L + G+++
  CTQ28744.1 35 RELSELIGVTRTTLREVLQRLARDGWLT 62
                59************************96 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.079
                HHHHHCT-CTTBSS-BHHHH CS
    HTH_IclR  5 alaiLdalaeapqeltlsel 24
                +l iL+ la+ + + ++ +l
  CTQ28744.1 79 GLNILETLARLDHD-SVPQL 97
                799*******9998.66666 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.8
                 HHHHHHHC CS
    HTH_IclR   3 dRalaiLd 10 
                 d+ala+Ld
  CTQ28744.1 122 DKALAVLD 129
                 79*****8 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   7.1e-06    0.0098      21      47 ..      35      61 ..      34      62 .. 0.96
   2 ?   -4.0   0.1       8.5   1.2e+04       7      13 ..      81      87 ..      80      88 .. 0.73
   3 ?   -2.3   0.0       2.4   3.3e+03      22      40 ..     210     228 ..     210     228 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.1e-06
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGlI 47
                reL+e +g++++t+++ l+rL ++G++
  CTQ28744.1 35 RELSELIGVTRTTLREVLQRLARDGWL 61
                8************************97 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 8.5
      HTH_24  7 kILelLq 13
                +ILe+L 
  CTQ28744.1 81 NILETLA 87
                7999886 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.4
      HTH_24  22 eLAerlglSpstvnrrlkr 40 
                 eL +r g  ++ ++ r+++
  CTQ28744.1 210 ELVRRYGHDSGEIWHRMQK 228
                 6778889999999***986 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.1e-06     0.011       8      56 ..      14      65 ..      11      68 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.1e-06
                    HH.HHHHHHHHH..HHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
  Fe_dep_repress  8 dY.LetIYtlse..ekkvvktkdlaerLnvspssVsemlkkLekdGyveyek 56
                    +Y +e I+ +    ++  +   +l+e ++v   +  e l++L++dG +  ++
      CTQ28744.1 14 EYiIESIWNNRFppGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH 65
                    55257777777654556677889************************98877 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00014       0.2      16      51 ..      35      68 ..      35      69 .. 0.92
   2 ?    1.7   0.0      0.21   2.9e+02      27      38 ..     206     217 ..     205     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
      HTH_28 16 reaArelgisrrtvyrWikryeegGiagLvprrrrp 51
                re++++ g++r+t++  ++r+   G+  L  ++++p
  CTQ28744.1 35 RELSELIGVTRTTLREVLQRLARDGW--LTIQHGKP 68
                799********************999..88888877 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.21
      HTH_28  27 rtvyrWikryee 38 
                 ++vy +++ry +
  CTQ28744.1 206 DQVYELVRRYGH 217
                 79********76 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.8e-05      0.08      29      56 ..      37      64 ..      35      70 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.8e-05
        PaaX 29 llaelGiseslvRaalsRlakaGwlvre 56
                l + +G+  +++R  l Rla++Gwl+ +
  CTQ28744.1 37 LSELIGVTRTTLREVLQRLARDGWLTIQ 64
                66789********************865 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.3e-05     0.074      29      61 ..      35      67 ..      28      69 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.3e-05
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
        Rrf2 29 eeiaerqnispsylekilakLrkaglvksvrGk 61
                +e++e  ++ ++ l+ +l++L++ g+++ + Gk
  CTQ28744.1 35 RELSELIGVTRTTLREVLQRLARDGWLTIQHGK 67
                699***************************997 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.16      21      48 ..      35      62 ..      21      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
                HHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR 21 seLakklgvskstvtrvldrLekkGlie 48
                 eL + +gv+++t+ +vl rL ++G+++
  CTQ28744.1 35 RELSELIGVTRTTLREVLQRLARDGWLT 62
                59************************97 PP

>> Cut8  Cut8, nuclear proteasome tether protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00021      0.29      42     103 ..      70     132 ..      31     135 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
        Cut8  42 rtpk.isgqpLplsrlLetLdkeqLqsllqslveehpeleqevskkapkpsiesllelLkekk 103
                 ++++  +   L++   L  Ld++++ +l+ +l++    +   + ++a +   +++l +L++ +
  CTQ28744.1  70 KVNNfWETSGLNILETLARLDHDSVPQLIDNLLSVRTNISTIFIRTAFRQHPDKALAVLDSAR 132
                 45555666779999*****************************************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1838.64
//
Query:       CTQ28745.1  [L=576]
Description: sodium:proton antiporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-290  963.3  23.0   3.7e-290  963.1  23.0    1.0  1  NhaB      Bacterial Na+/H+ antiporter B (NhaB)
    3.9e-06   26.3  48.0    0.00017   20.9   1.3    3.5  3  CitMHS    Citrate transporter
  ------ inclusion threshold ------
       0.51   10.4   1.6         52    4.0   0.9    3.8  3  ETRAMP    Malarial early transcribed membrane protein (ETRAMP


Domain annotation for each model (and alignments):
>> NhaB  Bacterial Na+/H+ antiporter B (NhaB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  963.1  23.0  6.3e-294  3.7e-290       2     514 ..      62     571 ..      61     572 .. 0.99

  Alignments for each domain:
  == domain 1  score: 963.1 bits;  conditional E-value: 6.3e-294
        NhaB   2 eislsqallknflgkspdwyklaiivfliinpivfflispfvagwllvaefiftlamalkcyplqpggllaieaviigmtsaeqvkeeivanlevllll 100
                 eis+++al++nflg+spdwykla+i+fli+np+vf  ++pfvagwllv+efiftlamalkcypl+pggllaiea++igmts+++v+eei+ nlevllll
  CTQ28745.1  62 EISYGRALWRNFLGQSPDWYKLALIIFLIVNPLVF-AVAPFVAGWLLVVEFIFTLAMALKCYPLLPGGLLAIEALLIGMTSPAHVREEIAGNLEVLLLL 159
                 799*******************************9.9************************************************************** PP

        NhaB 101 vfmvagiyfmkqlllfiftklllkirskillslafclaaaflsafldaltvvavvisvavgfysiyhkvasgkdlsedvdltddekieelkkeelekfr 199
                 +fmvagiyfmkqlllf+ft+lll+irsk+llslafclaaaflsafldaltvvavvisvavgfy+iyh+vas+++  +d dl dd++ie++++e+le+fr
  CTQ28745.1 160 MFMVAGIYFMKQLLLFVFTRLLLGIRSKMLLSLAFCLAAAFLSAFLDALTVVAVVISVAVGFYGIYHRVASARP--DDSDLLDDSHIEQHYREVLEQFR 256
                 *************************************************************************9..9********************** PP

        NhaB 200 aflrsllmhagvgtalggvvtlvgepqnliiaeqakwkfgefllrmspvtvpvlicglltcllveklklfgygeklpdevrkilvdfdreerkkrtkqd 298
                 +flrsl+mhagvgtalggv+t+vgepqnliia++a+w+fgef+lrm+pvt+pv++cglltcllvek++lfgyge lp  vrk+l++fd+++r++r++q+
  CTQ28745.1 257 GFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKAAGWHFGEFFLRMAPVTLPVMVCGLLTCLLVEKYRLFGYGEPLPPTVRKVLQEFDDRSRAQRSRQE 355
                 *************************************************************************************************** PP

        NhaB 299 kiklivqaliavwlivalalhlaavgliglsviilatsltgvtdehalgkafeealpftallavffsvvaviidqklfspviqfvlaaeektqlalfyi 397
                 +++li qali+vwlivala+hla+vgliglsviilat++tgvtdeha+gkaf+ealpftall+vffs+vaviidq+lf+pvi+fvl+a+ ++ql+lfy+
  CTQ28745.1 356 RLRLIAQALIGVWLIVALAFHLAEVGLIGLSVIILATTFTGVTDEHAIGKAFTEALPFTALLTVFFSIVAVIIDQQLFTPVIEFVLQASPHAQLSLFYL 454
                 *************************************************************************************************** PP

        NhaB 398 angllssvsdnvfvgtvyinevkaalleglitreqfellavaintgtnlpsvatpngqaaflflltsalaplirlsygrmvymalpytivlsivgllai 496
                 +ngllss+sdnvfvgtvyine+kaal++g+i+  qfe+lavaintgtnlpsvatpngqaaflflltsalaplirlsygrmv+malpytivl++vgll++
  CTQ28745.1 455 FNGLLSSISDNVFVGTVYINEAKAALEHGAISLPQFEMLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLTLVGLLCV 553
                 *************************************************************************************************** PP

        NhaB 497 efileavteylldlglil 514
                 ef+l +vt +ll  g+++
  CTQ28745.1 554 EFTLMPVTDWLLAHGWLV 571
                 **************9986 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5  21.2   0.00071       4.2      22     103 ..     131     219 ..      85     233 .. 0.77
   2 !   20.9   1.3   2.9e-08   0.00017     109     223 ..     255     395 ..     247     410 .. 0.78
   3 !    5.2  18.6    0.0017        10      17     164 ..     370     553 ..     355     566 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00071
                 x.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  22 l.......vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvllvlltallsafvsndgvvlimipivl 103
                 +       ++++  + + ia ++ +lll++++++++     l  ++ ++ll   ++k + l ++++l++a+lsaf++  +vv+++i++++
  CTQ28745.1 131 AiealligMTSPAHVREEIAGNLEVLLLLMFMVAGIYFMKQLLLFVFTRLLLGIRSK-MlLSLAFCLAAAFLSAFLDALTVVAVVISVAV 219
                 022233445566667777888888***************************888875.559999************77777777777665 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 2.9e-08
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
      CitMHS 109 lkklppllliplalaaniggaltpiGtpttraaarpglslpnlll...................lalllvgllplvllfmfgvalalpvnap....... 181
                   ++ ++l++ ++++ ++gg++t++G p            +nl++                   l++++ gll+++l+           ++        
  CTQ28745.1 255 FRGFLRSLMMHAGVGTALGGVMTMVGEP------------QNLIIakaagwhfgefflrmapvtLPVMVCGLLTCLLVE----------KYRlfgygep 331
                 5677889*********************............*****9999999999988888777666666665555554..........3334444455 PP

                 .................xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx RF
      CitMHS 182 .................kvkkqkaiieaiarsllpvatillla.....ykkveWsvlllfaGvf 223
                                   +++ ++++++ia++l+ v++i++la     +  +  sv++l++  +
  CTQ28745.1 332 lpptvrkvlqefddrsrAQRSRQERLRLIAQALIGVWLIVALAfhlaeVGLIGLSVIILATTFT 395
                 556666999999999999999999*******999999999888777776666666666666554 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0017
                 xxxxxx......xxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  17 lvlvll......vltieealsgiaspii........................llllgamiigaaleetGlfdrlaakllrlaggkrdllvllvlltall 85 
                 +v++++      ++++ +++       +                        +ll + + i+a++++  lf ++++++l+++    + l l+ l+ +ll
  CTQ28745.1 370 IVALAFhlaevgLIGLSVII-------LattftgvtdehaigkaftealpftALLTVFFSIVAVIIDQQLFTPVIEFVLQASPH--AQLSLFYLFNGLL 459
                 33333344433322222222.......12223444556666777777778889**************************99996..46999******** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxx RF
      CitMHS  86 safvsndgvvlimipivlslakrlkklppl...lliplalaaniggaltpiGtpttraaarpglslpnlll.......................lalll 158
                 s++ +n+ v  + i  + +  +  + + p    l++++ ++ n+ +++tp G             ++  ll                       ++l+l
  CTQ28745.1 460 SSISDNVFVGTVYINEAKAALEHGAISLPQfemLAVAINTGTNLPSVATPNGQA-----------AFLFLLtsalaplirlsygrmvwmalpytIVLTL 547
                 ******999999999999999875555555998889999999999999999999...........2223332233344444444443333333333344 PP

                 xxxxxx RF
      CitMHS 159 vgllpl 164
                 vgll++
  CTQ28745.1 548 VGLLCV 553
                 444333 PP

>> ETRAMP  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.47   2.8e+03       5      20 ..     187     202 ..     186     206 .. 0.80
   2 ?    4.0   0.9    0.0087        52      61      79 ..     207     226 ..     203     229 .. 0.90
   3 ?    1.8   0.0     0.044   2.6e+02      35      73 ..     336     375 ..     302     378 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.47
      ETRAMP   5 kvllffafLlavnllt 20 
                 k+ll +af+la  +l+
  CTQ28745.1 187 KMLLSLAFCLAAAFLS 202
                 6778899999998885 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0087
      ETRAMP  61 iatalallvasalG.lgiyk 79 
                 + t++a+++ +a+G +giy+
  CTQ28745.1 207 ALTVVAVVISVAVGfYGIYH 226
                 57999**************8 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.044
      ETRAMP  35 akkaikkiddkiekk.kkkkKliiistiatalallvasal 73 
                  +k ++++dd  +++  ++ +l +i+ + +++ l va+a+
  CTQ28745.1 336 VRKVLQEFDDRSRAQrSRQERLRLIAQALIGVWLIVALAF 375
                 66788888888777636788999***********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4226.32
//
Query:       CTQ28746.1  [L=176]
Description: oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-45  155.3  15.9    1.7e-45  155.0  15.9    1.0  1  DsbB      Disulfide bond formation protein DsbB


Domain annotation for each model (and alignments):
>> DsbB  Disulfide bond formation protein DsbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0  15.9   9.7e-50   1.7e-45       2     146 ..      12     159 ..      11     160 .. 0.98

  Alignments for each domain:
  == domain 1  score: 155.0 bits;  conditional E-value: 9.7e-50
                 HHHHHHHHHHHHHHHHHHHHHHCTTTTSXXSHHHHHHHHHHHHHHHHHHTTSSSS...HHHHHHHHHHHHHHHHHHHHHHHHHHHSX-SSTSB-B.SXX CS
        DsbB   2 rllllllalaslallalAlyfqhvlglePCelCvyqRlallliallallaaiapk...rllllllallaalvgaalaarhvgvellpwdpasCgs.lpt 96 
                 r ++ll+al++++l ++Al+fqhv+ l+PC++C+y+R+al++i+ ++l++aiapk   r ++++++l++a+ g+ la+ h+ ++l+p+++++C + +++
  CTQ28746.1  12 RGAWLLMALTAFILELVALWFQHVMLLQPCVMCIYERCALFGIMGAGLVGAIAPKtplRYVAMAIWLYSAIRGLQLAWEHTMIQLHPSPFQTC-DfAAR 109
                 678****************************************************99888*********************************.999** PP

                 XTTSXHHHHSSTTTTTXXSSSSSSSXECTTSEHHHHHHHHHHHHHHHHHH CS
        DsbB  97 fpealpldewlpevfkatgdCgeadwkllglsmaqwnllifalllllllv 146
                 fp +lpld+wlp+vf a+gdC+  +w++l l+m+qw + ifa++ll++++
  CTQ28746.1 110 FPTWLPLDKWLPQVFVASGDCSVRQWQFLSLEMPQWLVGIFAAYLLVAIL 159
                 **********************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1356.07
//
Query:       CTQ28747.1  [L=114]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-27   95.4   0.0    1.9e-27   95.1   0.0    1.1  1  DUF1971   Domain of unknown function (DUF1971)
     0.0035   17.0   0.1     0.0056   16.4   0.1    1.4  1  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> DUF1971  Domain of unknown function (DUF1971)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.0   2.1e-31   1.9e-27       1      80 []      14      94 ..      14      94 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 2.1e-31
                EE---EETTTS-GGGGSSETSSTTEEEEEEEEESEEEEEEEST..TSSECEEEEEETTEEEEB-TT-EEEEEESSTT-EEEE CS
     DUF1971  1 krtpvfteetlPaallekHnTkaGvwgklrVleGelkfyilae..egeeeeelllsaeqpgvvePqvwHkveplsddvefqv 80
                ++tp+ft+e++Paall++HnT aGv+g+l+V+eG++++y++a+  ++e+e++++++a+q+++++Pq+wH+ve lsdd++f++
  CTQ28747.1 14 RSTPFFTKENVPAALLSHHNTAAGVFGQLCVMEGTVTYYGFANeqATEPEKKVVIHAGQFATSPPQYWHRVE-LSDDARFNI 94
                79***************************************99889999***********************.9999***86 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   6.3e-07    0.0056      25      63 ..      44      90 ..      29      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.3e-07
                EEESEEEEE.ECTE.......EEEEETTEEEEE-TT-EEEEEE-SSS CS
     Cupin_2 25 VleGegelt.vdge.......eveleaGdsvyfpagtpHrfrNtgde 63
                V eG+++++   +e       +v+++aG+++  p+  +Hr++   d+
  CTQ28747.1 44 VMEGTVTYYgFANEqatepekKVVIHAGQFATSPPQYWHRVELSDDA 90
                889999999877555555666********************877755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 885.54
//
Query:       CTQ28748.1  [L=148]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-08   34.8  10.4    3.5e-08   34.0  10.4    1.4  1  CxxCxxCC  Putative zinc- or iron-chelating domain


Domain annotation for each model (and alignments):
>> CxxCxxCC  Putative zinc- or iron-chelating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0  10.4   1.9e-12   3.5e-08       2      85 .]      24      92 ..      23      92 .. 0.97

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.9e-12
    CxxCxxCC  2 CkeCgaCCkelkvklteedlerlkaaevaeeeeeskkiakadgrCvfldeetklCkiYeeR....pkicrlfpasekeellaraetCa 85
                C++Cg+CC    +kl +ed+++++ ++v               +C++l+ +t++C++Y++R    p++++l+++ +  +++++++tCa
  CTQ28748.1 24 CDGCGQCCL---HKLMDEDTDEIYFTNV---------------ACRQLNIKTCQCRNYARRfeyePDCIKLTRE-NLPTFEWLPPTCA 92
                *********...****************...............******************************9.8***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1219.92
//
Query:       CTQ28749.1  [L=219]
Description: putative isomerase/hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-52  178.7   0.0    1.3e-52  178.6   0.0    1.0  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
  ------ inclusion threshold ------
       0.17   12.3   0.0       0.35   11.2   0.0    1.5  2  TYA            TYA transposon protein


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.6   0.0   1.5e-56   1.3e-52       1     210 [.      18     212 ..      18     219 .] 0.94

  Alignments for each domain:
  == domain 1  score: 178.6 bits;  conditional E-value: 1.5e-56
                    .EEEEEEE--SHHHHHTTT.-SS-EEEEEEGGGE.EETTE..EE-TTSSSS-EE......EEEEEEEESS-B--T--HHHHHTTEEEEEEEEEEE- CS
  FAA_hydrolase   1 kivcdglnyaehvreagkaaeeppdrhiplepvfflkrasslvgpgdpirrPagsekldyEvELavvigkplrevlsveeAedaiaGytllnDvsa 96 
                    k+vc+g nya+h++e+g+a    p+     epv+f+k++++l+  ++p+++P+g  ++++EvELav ig  lr++ + e + + iaGy +++D++ 
     CTQ28749.1  18 KVVCVGSNYAKHIKEMGSA---TPE-----EPVLFIKPETALCDLRQPLVLPEGLGSVHHEVELAVLIGSTLRQA-TEEHVLKGIAGYGVALDLTL 104
                    689*************955...556.....899******************************************.8******************* PP

                    SBGGG---.HH..HHHHTGGGEEEEEE-B--B-.STT---SS-EEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHH-B-TT-EEEEEES...... CS
  FAA_hydrolase  97 Rdlqaeekapl..gwflgksfdtftpiGpwivtpdeledpedlelrlrvngeevqdsntkdmifspaeliahlsagltLepGdliltGTpsgvgae 190
                    Rdlqa+ k ++  +w ++k+fd+++pi+ +i  ++  +dp++ +l+l +nge++q+++t+dmi+++  lia++s+++tL++Gd+iltGTp+gvg  
     CTQ28749.1 105 RDLQAKMK-KAgqPWEKAKGFDNACPISGFIPAAEFHGDPQNTSLSLKINGEVRQQGTTADMIHKIVPLIAYMSRFFTLKAGDVILTGTPEGVG-- 197
                    ****9999.44568888**************99999999*****************************************************98.. PP

                    .S--EE--TT-EEEEEETTT CS
  FAA_hydrolase 191 eeslkflkdgDeveveiegl 210
                          l+ gDe+ev   gl
     CTQ28749.1 198 -----PLHSGDELEVGFNGL 212
                    .....5*******9998776 PP

>> TYA  TYA transposon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.4   1.3e+04      43      59 ..      33      50 ..      24      56 .. 0.62
   2 ?   11.2   0.0   3.9e-05      0.35      32      74 ..     119     161 ..     103     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.4
         TYA 43 assavpenhh.haspqaa 59
                + sa pe++   + p++a
  CTQ28749.1 33 MGSATPEEPVlFIKPETA 50
                567888776424556655 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3.9e-05
         TYA  32 tkansqqettpassavpenhhhaspqaaqvpspqnGpyqqqrm 74 
                  ka    ++ p s  +p  + h  pq ++  +  nG+ +qq+ 
  CTQ28749.1 119 EKAKGFDNACPISGFIPAAEFHGDPQNTSLSLKINGEVRQQGT 161
                 5777788999******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1645.42
//
Query:       CTQ28750.1  [L=93]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-33  113.6   0.2    5.4e-33  113.2   0.2    1.2  1  YcgL      YcgL domain
  ------ inclusion threshold ------
      0.054   13.7   0.1       0.09   13.0   0.1    1.4  1  UPF0180   Uncharacterised protein family (UPF0180)


Domain annotation for each model (and alignments):
>> YcgL  YcgL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.2     6e-37   5.4e-33       1      73 []       3      75 ..       3      75 .. 1.00

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 6e-37
        YcgL  1 caiYksskkeetYLYvekkddfsevPeeLlesfGkpefvmeleLskerkLaradaekVlaaLeeqGfylqlpp 73
                c iY+s+k+e+tYLYvekkddfs+vP+eL++sfG+p+++m l L+ ++kL++ad ekV++aL+eqG+ylqlpp
  CTQ28750.1  3 CVIYRSTKREQTYLYVEKKDDFSRVPDELMRSFGTPQMAMLLPLDGRKKLVNADLEKVKQALSEQGYYLQLPP 75
                9***********************************************************************9 PP

>> UPF0180  Uncharacterised protein family (UPF0180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     1e-05      0.09       5      22 ..      53      70 ..      50      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1e-05
     UPF0180  5 VeegLsnvkeaLrekGYe 22
                V  +L++vk+aL+e+GY 
  CTQ28750.1 53 VNADLEKVKQALSEQGYY 70
                899**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 705.12
//
Query:       CTQ28751.1  [L=232]
Description: cell division inhibitor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-33  113.7   0.0    4.5e-33  113.3   0.0    1.2  1  MinC_N    Septum formation inhibitor MinC, N-terminal domain
    4.6e-31  106.8   0.0    8.1e-31  106.0   0.0    1.4  1  MinC_C    Septum formation inhibitor MinC, C-terminal domain
  ------ inclusion threshold ------
       0.22   11.0   0.0       0.27   10.6   0.0    1.2  1  DUF1204   Protein of unknown function (DUF1204)


Domain annotation for each model (and alignments):
>> MinC_N  Septum formation inhibitor MinC, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   0.0   7.5e-37   4.5e-33       1     103 [.       1     103 [.       1     104 [. 0.99

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 7.5e-37
      MinC_N   1 leqapvelksskltvlvleLhtsdlerikqkLsdkiaeaPklfknapvvldvskleekvdlkaLkelisraglrivgvsgckdkaskeeimkagLpvLs 99 
                 ++++p+elk+s++t++v++Lh+++ e+i q+L+dkia+aP+++++apvv++++ +ee+v+++a+ e+i ++glri+gvsgck  ++k ei  ag+p+L+
  CTQ28751.1   1 MSNTPIELKGSSFTLSVVHLHDANPEVIRQALEDKIAQAPAFLRHAPVVVNIASIEEEVEWRAINEAIAATGLRIMGVSGCKIPRLKTEIDRAGIPLLT 99 
                 89************************************************************************************************* PP

      MinC_N 100 kske 103
                 + ke
  CTQ28751.1 100 EGKE 103
                 *987 PP

>> MinC_C  Septum formation inhibitor MinC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.0   1.4e-34   8.1e-31       2     101 ..     129     228 ..     128     229 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 1.4e-34
                 E-S-B-TT-EEEES.SEEEESC-B-TT-EEEESS-EEEEEEE-SEEEE-TTS-TT--EEEEEE--SEEEET.TEEEE--TT-..--S-EEEEE..ETTE CS
      MinC_C   2 vkktvRsGqqieae.gdlvvlgdVnpGAeviAdgniivlGalrGrahAGakgneearifalklepeqlrIa.dyiaraseeeeeekepeiaqisleedk 98 
                 ++++vRsGq+i+a+  dl+v+++V++GAe+iAdgni+v+G +rGra+AGa g+++a+if+++l++e+++Ia +y+   s+++++e ++++a+++l e +
  CTQ28751.1 129 IDQPVRSGQRIYAPhCDLIVTNHVSAGAELIADGNIHVYGMMRGRALAGAGGDRDAQIFCTHLAAELVSIAgEYWL--SDNIPAEFYGKAARLRLGESA 225
                 789*************************************************************************..99999999*******999988 PP

                 EEE CS
      MinC_C  99 ivi 101
                 + i
  CTQ28751.1 226 LAI 228
                 877 PP

>> DUF1204  Protein of unknown function (DUF1204)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.6e-05      0.27      84     132 ..      16      64 ..       6     101 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.6e-05
     DUF1204  84 kvaelvqkrldrvkahlddkkkiePkfleynqvsGnvklleelveaGev 132
                  v +l  +  + ++  l+dk +  P fl +  v  n++ +ee ve   +
  CTQ28751.1  16 SVVHLHDANPEVIRQALEDKIAQAPAFLRHAPVVVNIASIEEEVEWRAI 64 
                 566777788888999***************************9996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1838.19
//
Query:       CTQ28752.1  [L=270]
Description: cell division inhibitor, a membrane ATPase,activates minC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.8e-22   77.7   0.3    1.9e-21   76.8   0.3    1.4  1  AAA_31          AAA domain
    4.8e-20   71.9   0.1    6.4e-20   71.5   0.1    1.2  1  CbiA            CobQ/CobB/MinD/ParA nucleotide binding domain
    6.6e-17   61.8   1.1    1.2e-15   57.7   1.1    2.5  1  ParA            NUBPL iron-transfer P-loop NTPase
    1.4e-10   40.8   2.7    1.5e-09   37.5   1.9    2.2  2  ArsA_ATPase     Anion-transporting ATPase
    1.4e-09   37.7   0.6    2.9e-09   36.6   0.6    1.5  1  MipZ            ATPase MipZ
    4.1e-07   29.7   0.0    7.3e-07   28.9   0.0    1.4  1  CBP_BcsQ        Cellulose biosynthesis protein BcsQ
    2.5e-05   23.9   0.2     0.0007   19.1   0.1    2.5  2  Fer4_NifH       4Fe-4S iron sulfur cluster binding proteins, 
    0.00027   20.7   0.1     0.0004   20.2   0.1    1.3  1  AAA_24          AAA domain
     0.0018   18.1   0.1     0.0081   16.0   0.1    1.9  2  CLP1_P          mRNA cleavage and polyadenylation factor CLP1
     0.0049   16.5   2.5      0.022   14.4   1.2    2.1  2  SRP54           SRP54-type protein, GTPase domain
     0.0076   16.1   4.3          2    8.2   1.4    3.0  3  AAA_26          AAA domain
     0.0088   15.4   0.2       0.02   14.2   0.2    1.5  1  VirC1           VirC1 protein
  ------ inclusion threshold ------
      0.012   15.7   0.4       0.04   14.0   0.4    1.9  1  DUF87           Helicase HerA, central domain
      0.023   15.0   0.9      0.077   13.2   0.9    1.8  1  CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/C
      0.027   13.9   0.3        8.4    5.8   0.2    2.5  3  adh_short       short chain dehydrogenase
      0.089   12.4   2.2       0.73    9.4   2.4    2.2  2  AAA_25          AAA domain
       0.26   10.2   1.6       0.73    8.8   1.7    1.7  1  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
       0.68    9.6   2.5        1.6    8.4   2.5    1.5  1  AAA_30          AAA domain


Domain annotation for each model (and alignments):
>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.3   1.9e-24   1.9e-21       2     163 ..       3     159 ..       2     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 1.9e-24
      AAA_31   2 kvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQ.anattglgiekneiektlyevlieeknikeaiiktk.venldlipssidLaeaeielv 98 
                 ++I+++  KGGvGKTT+s ++a  la++gkk+ ++D+D    n+   +g+e +++  ++++v+  ++++++a+ik+k +enl+++p+s    + ++ l 
  CTQ28752.1   3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGlRNLDLIMGCE-RRVVYDFVNVIQGDATLNQALIKDKrTENLYILPASQT--RDKDAL- 97 
                 89************************************8637999999975.5566899999999*******9999879999*****864..333344. PP

      AAA_31  99 elekkeeilkellekvkd.eYDyiiiDcpPsLglltenaLvasdsviipvqaeayaleGleqllkt 163
                     ++e ++++le++k+ e+D+i+ D p  +++ +  aL+ +d+ ii +++e  +++  +++l  
  CTQ28752.1  98 ----TREGVDKVLEELKKmEFDFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGI 159
                 ....3444578888887636*********************************9998877777655 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.1   6.5e-23   6.4e-20       1     128 []       5     227 ..       5     227 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 6.5e-23
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 i+++s+kGGvGKTt +a++a+ la++g++++++D+D    nl +++g e ++                                               
  CTQ28752.1   5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYdfvnviqgdatlnqalikdkrtenlyilpasqtrdkdaltregvd 103
                 79******************************************99999999999999***************************************** PP

                 ................................................CCHCCCHHHHHHCHCHHHH....EEEEEEEEESS...-TTCHHHHHHHHHH CS
                 ................................................xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ................................................dlkrllellealgkkkall..lkiagvvlnrvdgeneetllkealeelkqr 103
                                                                 d +r+l++l++ +++ ++        ++l+r+++ + ++  + ++e++++ 
  CTQ28752.1 104 kvleelkkmefdfivcdspagietgalmalyfadeaiittnpevssvrDSDRILGILASKSRRAENGeePIKEHLLLTRYNPGRVNKGDMLSMEDVLEI 202
                 *********************************************************988888655587777789999999999999999999999977 PP

                 CTS-EEEEEE--CCHCCCCHHTS-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA 104 ygvpvlgviprdeavaeapargepv 128
                 ++++++gvip+d++v +a ++gepv
  CTQ28752.1 203 LRINLVGVIPEDQSVLRASNQGEPV 227
                 7*********************997 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   1.1   1.2e-18   1.2e-15       3     244 ..       2     245 ..       1     247 [. 0.78

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 1.2e-18
        ParA   3 kkviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeekpeqsekkli...PveakgikvmSigfllesedeavvwrGpmksk 98 
                  ++i+v+SgKGGVGK+t ++ +A+ La+kg+k+ ++D Di   ++  ++g+e++ +    + ++    +++  ik    + l     +    + ++  +
  CTQ28752.1   2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQgdaTLNQALIKDKRTENLYILPASQTRDKDALTRE 100
                 579**************************************************7555444344421133335577777777766677777888999999 PP

        ParA  99 aikqllkdvewgelDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteif..gkggge 195
                  ++++l++ +  e D+++ D P G    +l  +     ++a+i t p+  ++ d  + + ++ + + +     e ++ +   +  +  ++      ++e
  CTQ28752.1 101 GVDKVLEELKKMEFDFIVCDSPAGIETGALMALYFA--DEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVNkgDMLSME 197
                 99**********************988777665555..89******************99998877776655555555444433333333311334677 PP

        ParA 196 klaeelgvpllgeipldpeireasdegkplvlkepeseaakaleeiaek 244
                 ++ e l ++l+g ip d+++ +as++g+p++l++  s+a ka+++ +e+
  CTQ28752.1 198 DVLEILRINLVGVIPEDQSVLRASNQGEPVILDA-ASDAGKAYADTVER 245
                 88888999********************999886.67788888777766 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   1.9   1.5e-12   1.5e-09       3      38 ..       5      40 ..       2      46 .. 0.91
   2 ?    2.0   0.0     0.098        97     114     135 ..     103     124 ..      68     164 .. 0.85

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.5e-12
                 EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase  3 vilvgGKGGVGKttvsaatavklsekgkkvllistD 38
                 +++ +GKGGVGKtt+saa+a+ l++kgkk+++i  D
   CTQ28752.1  5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40
                 45678***************************9877 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.098
                  HHHHHHHHCSSSSEEEEESBSC CS
  ArsA_ATPase 114 eellkyvkeeeydvvvlDtaPT 135
                  +++l+++k++e+d +v D++  
   CTQ28752.1 103 DKVLEELKKMEFDFIVCDSPAG 124
                  6788889999******998643 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.6   2.9e-12   2.9e-09       1     130 [.       3     144 ..       3     165 .. 0.71

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2.9e-12
                 EEEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHHH..HHHHHHHHHT------EEE-.SSS-H........HHHTTS-HHHHHHH CS
        MipZ   1 hvivlgnekGGsGksttavhvavaLlkkGarvaaidldlrqrtlaryle..nraataerkglsLplpeala.lseae........eaeveeeeeaevae 88 
                 ++iv++  kGG Gk+t +  +a+ L++kG++  +id+d+  r l   ++   r+     + ++ + +  +a ++++         +++  +++  + + 
  CTQ28752.1   3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGceRRVVYDFVNVIQGDATLNQAlIKDKRtenlyilpASQTRDKDALTREG 101
                 58************************************9888887776521444333333333333322220222220001111145666777777789 PP

                 HHHHHHHHHH.H-SEEEEE--SS--HHHHHHHHT-SEEEEEEE CS
        MipZ  89 leelvadlea.eldfividtPGsdsalsrlahsladtlvtPln 130
                 +++++++l++ e+dfiv d+P   ++ + +a  +ad  +   n
  CTQ28752.1 102 VDKVLEELKKmEFDFIVCDSPAGIETGALMALYFADEAIITTN 144
                 999**99975389**********9999********98665444 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   7.3e-10   7.3e-07       3     151 ..       4     149 ..       1     157 [. 0.85

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 7.3e-10
    CBP_BcsQ   3 vlalqGvRGGvGttsllaaLawalhelgesvlviDlspd.nlLrlhFnvdieqregwaraeldgapwrqaale..yapgldllPfGelnveekenlqql 98 
                 +++++  +GGvG+t+ +aa+a+ l + g++ +viD+      L l    + +    +++    +a ++qa ++   +++l +lP  +++++++     +
  CTQ28752.1   4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGlRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKdkRTENLYILPASQTRDKDAL----T 98 
                 67777789***************************97642568999999999999999999999999999886226789*****9999999998....4 PP

    CBP_BcsQ  99 aekaeallaalkelkeqyrwillDlpagasaltrellaladlvllvvepdanc 151
                 +e  +++l++lk+   ++++i+ D pag ++ +  +l  ad  +  ++p++++
  CTQ28752.1  99 REGVDKVLEELKK--MEFDFIVCDSPAGIETGALMALYFADEAIITTNPEVSS 149
                 5555555555554..58*****************99999*********99865 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   7.1e-07    0.0007       4      39 ..       7      42 ..       3      89 .. 0.85
   2 ?    2.0   0.0      0.11   1.1e+02     193     241 ..     196     243 ..     131     254 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 7.1e-07
   Fer4_NifH  4 aiyGkGGiGksttsqnlsaalaemgkkvlivGCDPk 39
                   GkGG+Gk+t+s+ +++ la++gkk +++  D  
  CTQ28752.1  7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42
                457*************************99987755 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.11
   Fer4_NifH 193 iekfaeelgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrela 241
                 +e+  e l ++++ v+P d+ v +a+ + + vi  a  s+ +k y +  
  CTQ28752.1 196 MEDVLEILRINLVGVIPEDQSVLRASNQGEPVILDAA-SDAGKAYADTV 243
                 456667789999*********9999999887764333.33356666555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1     4e-07    0.0004       5      60 ..       6      75 ..       2     138 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4e-07
      AAA_24  5 iliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdieswedfldevvel.......a 60
                ++  G+ g+GKTt+ + +       g+k+++id++ Gl++ld + + + + + df++ ++ +        
  CTQ28752.1  6 VVTSGKGGVGKTTSSAAIatglaqkGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDatlnqalI 75
                5667*************99**********************99887766666666666666655555550 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   8.1e-06    0.0081       1      34 [.      10      43 ..      10      48 .. 0.92
   2 ?   -0.8   0.0       1.1   1.1e+03      90     145 ..     101     159 ..      87     169 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.1e-06
      CLP1_P  1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvGq 34
                G+  +GK+T ++ ++  +++kg+k+v++D D+G 
  CTQ28752.1 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGL 43
                66789***************************95 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
      CLP1_P  90 eveekleenkkakasgliIntpGwvkglgaell...leliealepdvvvvldqeellne 145
                  v++ lee kk++ ++++ ++p  ++  ++  l    e+i + +p+v  v d+++ l  
  CTQ28752.1 101 GVDKVLEELKKMEFDFIVCDSPAGIETGALMALyfaDEAIITTNPEVSSVRDSDRILGI 159
                 45666677778888999999987776543332212367888888888888888776655 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   1.2   2.2e-05     0.022       4      38 ..       6      40 ..       3      42 .. 0.88
   2 ?    1.0   0.0      0.28   2.8e+02      68      91 ..      98     121 ..      74     152 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.2e-05
                EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkvllvaaD 38
                ++  G  G+GKTt+ a +a  l ++gkk++++  D
  CTQ28752.1  6 VVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40
                5667999**********************999877 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHHTTSSEEEEEE CS
       SRP54  68 paavakeavekakeekidvvlvDT 91 
                 + + + + +e+ k+ ++d++++D+
  CTQ28752.1  98 TREGVDKVLEELKKMEFDFIVCDS 121
                 4455677789999999******96 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   1.4     0.002         2       3      32 ..       5      34 ..       3      38 .. 0.90
   2 ?    1.4   0.0      0.24   2.4e+02      67     115 ..      83     130 ..      62     147 .. 0.68
   3 ?    5.8   0.0     0.011        11     154     194 ..     152     217 ..     137     221 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.002
      AAA_26  3 ifvtgtdtgvGKTvvslgLvralkrkgvkv 32
                i+vt+   gvGKT+ s++++  l +kg k+
  CTQ28752.1  5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKT 34
                8999999******************99986 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.24
      AAA_26  67 lalsaplspelaarqegedid.lekivkelek.dadivvVEGagglgvpit 115
                 l +  p+s++  ++  ++  + ++k+ +el+k + d++v++   g+ ++ +
  CTQ28752.1  83 LYIL-PASQTRDKDALTR--EgVDKVLEELKKmEFDFIVCDSPAGIETGAL 130
                 4444.4444444443333..237888888888788*****99988877765 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.011
      AAA_26 154 qknvrvlGvilNkvrnpe..........................nvetlekksgipvlGvvPylpdl 194
                 +   r+lG+ ++k r +e                           +e + +   i+++Gv+P ++++
  CTQ28752.1 152 D-SDRILGILASKSRRAEngeepikehllltrynpgrvnkgdmlSMEDVLEILRINLVGVIPEDQSV 217
                 3.6799******9877755667888888888899999999999999****************99876 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2     2e-05      0.02       3      38 ..       4      39 ..       2      45 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2e-05
       VirC1  3 litfcslkGGaGkttalmglcsalasdgkrvalfea 38
                +i ++s kGG Gktt+  ++ + la++gk+  + + 
  CTQ28752.1  4 IIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDF 39
                78999***********************99877665 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.4     4e-05      0.04      30     203 ..      10     188 ..       9     211 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4e-05
       DUF87  30 gsTGsGKSntvavLleellekkgatililDpHGEYgkal......ekllsekvkvitpspsakdkelkinpwsldpeelldlleeddkpaaavqrsvle 122
                 g+ G+GK++  a +   l+ +kg +++++D +    +++      ++ + + v+vi+ +        ++n ++++ +  ++l++    +++  ++++ +
  CTQ28752.1  10 GKGGVGKTTSSAAIATGLA-QKGKKTVVIDFDIGLRNLDlimgceRRVVYDFVNVIQGD-------ATLNQALIKDKRTENLYIL-PASQTRDKDALTR 99 
                 778****************.**********99888888887777666667777777764.......6899999998888888888.4444444777777 PP

       DUF87 123 ealdqakakeekeklssdepveklleelk..........kekeelrklknqaiarlldkledllrkggsfsnsstdliallleklekegki 203
                 e +d++   ee +k+ +d +v  +   ++          +e+    ++  ++ +   + l  l +k +   n ++ + ++ll    ++g++
  CTQ28752.1 100 EGVDKVL--EELKKMEFDFIVCDSPAGIEtgalmalyfaDEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRV 188
                 7888777..7777777777776666666655666666554444444444444444444444444444444555555555555555555555 PP

>> CobA_CobO_BtuR  ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.9   7.8e-05     0.077       4     103 ..       4     120 ..       2     132 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.8e-05
  CobA_CobO_BtuR   4 lihvytGdG.KGKttAAlGlalRalgaglkvlvvqFlKg.eke.....sgElaalkkl........eielerlg..........kegfvkmeeee 73 
                     +i v  G+G  GKtt++  +a   + +g+k +v+ F  g + +       E++++  +        +                 ++ ++   +++
      CTQ28752.1   4 IIVVTSGKGgVGKTTSSAAIATGLAQKGKKTVVIDFDIGlR-NldlimGCERRVVYDFvnviqgdaT------LnqalikdkrtENLYI-LPASQ 90 
                     57778887537************************977743.2234435577776666655544331......1222343444223344.67888 PP

  CobA_CobO_BtuR  74 keedaaaakealekakealaseeydlvvlD 103
                     ++++ a ++e+++k+ e+l++ e+d++v D
      CTQ28752.1  91 TRDKDALTREGVDKVLEELKKMEFDFIVCD 120
                     9999999*********************99 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2    0.0084       8.4       2      31 ..       4      38 ..       3      71 .. 0.82
   2 ?   -2.8   0.0       3.7   3.7e+03      35      57 ..     100     120 ..      96     133 .. 0.68
   3 ?    5.6   0.0    0.0098       9.8      95     141 ..     193     238 ..     183     243 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0084
                EEEEESTTSHHHH.....HHHHHHHHTT-EEEEEE CS
   adh_short  2 vvlvtGassGIGr.....aiakelakeGakvvvvd 31
                +++vt + +G+G+     aia  la++G k+vv+d
  CTQ28752.1  4 IIVVTSGKGGVGKttssaAIATGLAQKGKKTVVID 38
                79**********83333356777888888888765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHTTSEEEEEE-T CS
   adh_short  35 ekleevakelkeegakalaiqvD 57 
                 e + +v++elk+   ++ +i +D
  CTQ28752.1 100 EGVDKVLEELKKM--EFDFIVCD 120
                 5566777777764..57777777 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0098
                 GCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTS CS
   adh_short  95 elseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkv 141
                  ls e++ +++ +Nl+gv+   ++vl+a  +q +  I   +S agk 
  CTQ28752.1 193 MLSMEDVLEILRINLVGVIPEDQSVLRA-SNQGEPVILDAASDAGKA 238
                 47788999********************.999999*********975 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.4   0.00073      0.73      35     150 ..       5     121 ..       1     125 [. 0.63
   2 ?   -3.1   0.0       4.9   4.9e+03      32      46 ..     223     237 ..     211     240 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00073
      AAA_25  35 lallaGapgtGKttlaldlalava.tGkpwlg.pvapeqgkVlyvsaEdsedelrrRlravgeal.........rddarllvldlagveslpLfakdrg 122
                 +++  G +g+GKtt    +a  +a +Gk+    ++    ++  ++ +++++  +   +  +  ++         ++ ++l++l +         +++++
  CTQ28752.1   5 IVVTSGKGGVGKTTSSAAIATGLAqKGKKTVViDFDIGLRNLDLIMGCERR-VVYDFVNVIQGDAtlnqalikdKRTENLYILPAS--------QTRDK 94 
                 57889**********999999999766654445343344444344444444.3444444444444555555555555666666542........34566 PP

      AAA_25 123 gtlltadvdaleaaieevegvrlvviDp 150
                 ++l+ + vd++ ++++++e  +++v D+
  CTQ28752.1  95 DALTREGVDKVLEELKKME-FDFIVCDS 121
                 6667788999999999965.99999886 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.9
      AAA_25  32 agelallaGapgtGK 46 
                  ge ++l +a+++GK
  CTQ28752.1 223 QGEPVILDAASDAGK 237
                 566777777777777 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.7   0.00074      0.73      34      66 ..       8      40 ..       2     121 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00074
                EEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE- CS
        MeaB 34 ltGvPGaGkstlvealglelrrrGkrvavlavD 66
                  G  G+Gk t   a+++ l+++Gk+  v+  D
  CTQ28752.1  8 TSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFD 40
                45999************************9888 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.5    0.0016       1.6      20      51 ..       5      36 ..       2      38 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0016
      AAA_30 20 vavltGpAGtGKttalkalreaweaaggrvig 51
                ++v  G  G GKtt+ +a++  ++++g++ ++
  CTQ28752.1  5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36
                67899*******************99866554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1946.68
//
Query:       CTQ28753.1  [L=89]
Description: cell division topological specificity factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-25   87.5   0.2      5e-25   87.3   0.2    1.0  1  MinE      Septum formation topological specificity factor Min
  ------ inclusion threshold ------
      0.049   13.4   0.1      0.051   13.3   0.1    1.2  1  DUF4364   Domain of unknown function (DUF4364)


Domain annotation for each model (and alignments):
>> MinE  Septum formation topological specificity factor MinE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.2   5.5e-29     5e-25       1      68 []      14      82 ..      14      82 .. 0.93

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 5.5e-29
                XXXSSS-EEEEEEEEES..SS--TTCCHHHHHHHHHHHHHH-..-SEEEEEEE.---E..EEEEEEEE-- CS
        MinE  1 SaevAKeRLkliLahdR.aslspelleqlkeeileviskYveideekvevkle.kekedvsvLeaniplk 68
                +a++AKeRL++i+a++R ++ +p++l+ql+++ilevi kYv+id+e v+v+le ++  d s+Le+n++l+
  CTQ28753.1 14 TANIAKERLQIIVAERRrGDAEPHYLPQLRKDILEVICKYVQIDPEMVSVQLEqRD-GDISILELNVTLP 82
                69**************999**********************************444.467*******996 PP

>> DUF4364  Domain of unknown function (DUF4364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   5.7e-06     0.051     100     141 ..      47      88 ..       9      89 .] 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.7e-06
     DUF4364 100 sevkadyykkengeytVklkikekdstllelklsvpseeqAk 141
                  ev ++y++ + +  +V+l+ +++d ++lel++++p+ e+ k
  CTQ28753.1  47 LEVICKYVQIDPEMVSVQLEQRDGDISILELNVTLPETEESK 88 
                 48999*******************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 694.77
//
Query:       CTQ28754.1  [L=375]
Description: ribonuclease D [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-41  142.4   0.0    4.1e-41  140.6   0.0    1.8  2  DNA_pol_A_exo1  3'-5' exonuclease
    1.6e-16   60.1   0.1    6.4e-15   54.9   0.0    2.7  3  HRDC            HRDC domain


Domain annotation for each model (and alignments):
>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.0   4.6e-45   4.1e-41       1     174 [.       3     169 ..       3     171 .. 0.99
   2 ?   -1.0   0.0      0.14   1.3e+03      67      86 ..     292     311 ..     269     338 .. 0.76

  Alignments for each domain:
  == domain 1  score: 140.6 bits;  conditional E-value: 4.6e-45
                     EEEEHSHHHHHHHHHHHTTSSEEEEEEEEE-SSSTTSSEEEEEEEEECSSEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHHHHH CS
  DNA_pol_A_exo1   1 yeivtdeeeleelieelknlkvvavDtEttsldlisatlvliliqlgekeeayiidplelgddvalealkrlledenitkvghnakfDlevlard 95 
                     y+++t++++l++++e+ +++++va+DtE+ ++++  ++ +l l ql++++++ +idpl + d   + +++ ll ++ +tk +h+ ++Dlev+ + 
      CTQ28754.1   3 YQMITTDDGLRAVCEAASAASAVALDTEFVRTRT--YYPQLGLLQLFDGQQVSLIDPLTIND---WAPMRDLLLNQDVTKYLHAGSEDLEVFLNA 92 
                     89********************************..**************************...9***************************** PP

                     HTS--SSEEEHHHHHHHTTHSTTSSHHHHHHHHHSB---GHCCTTSSTTTSSS-HHHHHHHHHHHHHTHHHHHHHHHHH CS
  DNA_pol_A_exo1  96 fgielenlfdtmlaayvldyershsLdsLaekylgdleldkeeqiakwqkarplleeqllYAaeDadvllrlfkkLtke 174
                     f   +++l+dt++ a++++ ++s++++s++e+y g ++ldk+e +++w  arpl+e q++YAa+D+++ll+++++L  e
      CTQ28754.1  93 FNLMPQPLIDTQILAAFCGRPMSWGFASMVEEYSG-VALDKSESRTDWL-ARPLTERQCEYAAADVWYLLPIASQLMAE 169
                     ***********************************.*************.*************************9876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.14
                     HHHHHHHT-TTSEEEESSHH CS
  DNA_pol_A_exo1  67 ealkrlledenitkvghnak 86 
                      +l++l++ + + kv+ ++k
      CTQ28754.1 292 APLQNLIDMPGYRKVFKDIK 311
                     56888888888888888877 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.4   1.3e+04      24      37 ..       4      17 ..       2      20 .. 0.73
   2 !   54.9   0.0   7.2e-19   6.4e-15       1      67 [.     213     278 ..     213     279 .. 0.97
   3 ?    2.2   0.0      0.02   1.8e+02       3      31 ..     305     333 ..     304     339 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.4
                HHHS-HHHHHHHHH CS
        HRDC 24 yvvfpdktLleiAe 37
                +++ +d+ L+++ e
  CTQ28754.1  4 QMITTDDGLRAVCE 17
                67888888888776 PP

  == domain 2  score: 54.9 bits;  conditional E-value: 7.2e-19
                 HHHHHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH---SHHHHHTSTTT-HHHHHHHHHHHHHH CS
        HRDC   1 qlallkaLrewReelAreedvppyvvfpdktLleiAeklPttleeLlqiegvgkrklekygeeilea 67 
                 ql++l+ L+ewR ++Are+d++ ++v+++++L+++A+++Pt+l+eL ++ g++   ++ +g++++++
  CTQ28754.1 213 QLGCLQLLAEWRLRKARERDLAVNFVVREEHLWSVARYMPTSLGELDSL-GLSGSEIRFHGKTLISL 278
                 799*********************************************9.*************9987 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHHHHHHTS-HHHHS-HHH CS
        HRDC   3 allkaLrewReelAreedvppyvvfpdkt 31 
                 +++k+ +++ +e++ e++v++  + +  +
  CTQ28754.1 305 KVFKDIKALVQEVSTEKGVSAELLASRRQ 333
                 69*****************9987766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2960.75
//
Query:       CTQ28755.1  [L=572]
Description: acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-114  383.0   0.0   1.7e-114  382.7   0.0    1.1  1  AMP-binding      AMP-binding enzyme
    4.4e-17   62.8   1.1    3.8e-16   59.8   0.3    2.6  2  AMP-binding_C    AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
       0.04   13.9   0.4        1.1    9.4   0.0    2.4  2  Pept_S41_N       Peptidase S41 N-terminal domain
       0.12   12.7   0.0       0.35   11.2   0.0    1.8  1  AMP-binding_C_2  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.7   0.0  3.8e-118  1.7e-114       1     422 [.      40     471 ..      40     472 .. 0.87

  Alignments for each domain:
  == domain 1  score: 382.7 bits;  conditional E-value: 3.8e-118
                  HHHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHH.HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESE CS
  AMP-binding   1 leeqaaktpdkvalvdsgegqtlTYreldervnrlAagLr.slGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakv 97 
                  +e++  ++ d++a+++   g+ +TYr l+er++++Aa+L+  lG++kgdrVa+++pn +++ val++il+aG++vv +np +t++el+++l+ds+a +
   CTQ28755.1  40 FEHATTRYADQPAFIN--MGEVMTYRKLEERSRAFAAYLQeGLGLQKGDRVALMMPNLLQYPVALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAAA 135
                  678889999******9..99********************99******************************************************** PP

                  EEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS..........................-TSCCCS-BTTSEEEEEEE-- CS
  AMP-binding  98 liatvdselleklleaaakleavklvivldadellkeeelkeeeeseekae..........................kpeeeeelkpddlayiiYTSG 169
                  ++  + s+ ++ l+++ ak  +v++vi++  ++ l +  +k++  +  +++                          +   ++e+ ++dla+++YT+G
   CTQ28755.1 136 IV--IVSNFAHTLEKVVAK-TQVQHVILTRMGDQLST--AKGTLVNFVVKYikrlvpkyhlpdaisfrsalqhgyrmQY-VKPEIVAEDLAFLQYTGG 227
                  **..666667777777765.56666666665554433..33333333333245677889999**************633.555899************ PP

                  SSSS-EEEEEEHHHHHHHHHHHHHHHC.SCCTTT-EE.EESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCH.HHHHHHHHHHHT-SEEEEEHHHH CS
  AMP-binding 170 TTGkPKGVmlshrnlvanvaslkletr.fklkeddvv.lsilplahifglilelllallsGatvvllpkdaald.pklllelieklkvtviagvPrvl 264
                  TTG  KG+ml+hrn++an+ +++  t+   l++++++ ++ lpl+hif+l++++ll++  G++  l+++  ++d p+ l++ ++k+  t ++gv++++
   CTQ28755.1 228 TTGVAKGAMLTHRNMLANLEQVN-ATYgPLLHRGKEFvVTALPLYHIFALTMNCLLFIELGGQNLLITN--PRDiPG-LVKELAKYPFTAMTGVNTLF 321
                  *********************86.33433366655552777*************************994..456466.5578888************* PP

                  HHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETT CS
  AMP-binding 265 eallesgalkaakkakdlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdg 362
                  +all++++++    + d+ssl+l   gg p+++++++++ +l+g+ +legYGlTE+++ v+ +++++ +   gs+G p+p +e+k+vD++  ++v++g
   CTQ28755.1 322 NALLNNKEFQ----QLDFSSLHLSAGGGMPVQQAVAERWVKLTGQYLLEGYGLTECSPLVS-VNPHDIDYHSGSIGLPVPSTEAKLVDDD-DNEVAPG 413
                  *****87777....56*******999**********************************9.5556666788*****************9.89999** PP

                  SEEEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 363 eeGellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                  ++Gel+++gp+vm gY+++p+at e ++  ++wl+TGD++++de+G l+iv+Rkkd+i +
   CTQ28755.1 414 QPGELCIKGPQVMLGYWQRPDATDEIIK--DGWLHTGDIAVMDEEGFLRIVDRKKDMILV 471
                  **************************98..57**************************76 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.23     1e+03      42      69 ..     174     201 ..     123     203 .. 0.70
   2 !   59.8   0.3   8.6e-20   3.8e-16       1      76 []     480     554 ..     480     554 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.23
                    HHHHHHHHHHHHT-TTTS-SEEEE-S-- CS
  AMP-binding_C  42 leeeLkahvrkelgpyavpkkvvfvdel 69 
                    l + +++++++ +++y  p+++ f ++l
     CTQ28755.1 174 LVNFVVKYIKRLVPKYHLPDAISFRSAL 201
                    4455666778889999999999988777 PP

  == domain 2  score: 59.8 bits;  conditional E-value: 8.6e-20
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+E ++++h +V e+a++Gvp    Gea++ fVv k + +++ee+L+ ++r++l  y+vpk v+f delpk   GK
     CTQ28755.1 480 EIEDVVMQHSGVLEVAAIGVPSGSSGEAVKIFVVKK-DAALTEEALITFCRRHLTGYKVPKLVEFRDELPKSNVGK 554
                    8*********************************97.445689*****************************9998 PP

>> Pept_S41_N  Peptidase S41 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00024       1.1      17      45 ..      21      49 ..      20      53 .. 0.87
   2 ?    2.1   0.1     0.042   1.9e+02      33      48 ..     318     336 ..     311     337 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00024
  Pept_S41_N 17 ndevpdlidprkfssPedfFksLlykkdd 45
                  +vp+ i+p+ ++s  ++F+  + ++ d
  CTQ28755.1 21 PADVPAEINPDRYQSLVELFEHATTRYAD 49
                579******************99877665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.042
  Pept_S41_N  33 edfFksLlykkd....drFS 48 
                 +++F++Ll++k+    d FS
  CTQ28755.1 318 NTLFNALLNNKEfqqlD-FS 336
                 689*****999877767.87 PP

>> AMP-binding_C_2  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.8e-05      0.35       1      44 [.     473     516 ..     473     534 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.8e-05
                      TEEE-HHHHHHHHHT-TTEEEEEEEEEEEETTEEEEEEEEEE-T CS
  AMP-binding_C_2   1 GvnvfPsqieevlkeieevepeYqivvtregelDelevkvEvke 44 
                      G nv+P +ie+v+++ ++v +   i v   ++ + +++ v  k+
       CTQ28755.1 473 GFNVYPNEIEDVVMQHSGVLEVAAIGVPSGSSGEAVKIFVVKKD 516
                      89**************9998877777777777777777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 4462.92
//
Query:       CTQ28756.1  [L=193]
Description: putative outer membrane-associated lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-48  163.2   0.0    3.4e-48  162.9   0.0    1.0  1  Slp       Outer membrane lipoprotein Slp family


Domain annotation for each model (and alignments):
>> Slp  Outer membrane lipoprotein Slp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   0.0   1.9e-52   3.4e-48       1     148 [.      20     172 ..      20     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: 162.9 bits;  conditional E-value: 1.9e-52
         Slp   1 LagCasvPeeirgesatel.slsevkaapeaykgkevrlGGkivkvenkkdktrleivslpLdssgrPelsdeseGRflarvegFlDPaiykkgrlvTv 98 
                 L+gC+svP++i+g+s+t++ +l +v++ap+ y+g+e+r+GGk+v+v+n++ ktrlei+++pLds +rP l+++s GR++a v+gFlDP+++ +g+lvTv
  CTQ28756.1  20 LSGCVSVPDAIKGTSPTPQqDLVRVMNAPQLYVGQEARFGGKVVNVQNQQGKTRLEIATVPLDSGARPVLGEPSRGRIFADVNGFLDPVDF-RGQLVTV 117
                 89***************999***********************************************************************.******* PP

         Slp  99 vGtlkgsetgkigeadytypvvevkgvklW.peeeveesyvkeyyye.......pywy 148
                 vG ++g+ +gk+g ++y++++++++g+k+W   ++v    + +++ +       p++y
  CTQ28756.1 118 VGPIAGVVDGKVGSTPYKFMLMNATGYKRWnVVQQVV---MPPQPIDpwmlgprPWGY 172
                 ******************************3333333...333333323445666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1716.17
//
Query:       CTQ28757.1  [L=231]
Description: putative peptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-29  102.8   0.0    3.4e-29  102.4   0.0    1.2  1  Peptidase_M22  Glycoprotease family


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.0   1.9e-33   3.4e-29      23     131 ..      28     132 ..      26     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 1.9e-33
                    HHHHHHHHHHHHHHHHHHHHHHTSTGGGEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHHHHCCHCTSEC.SSCEEEEESSSTEE CS
  Peptidase_M22  23 elasraHserllplieealaeaglsledldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleahalaarleeke.efPvvllvsGghtq 117
                    e++ r+H++r+lpl++e+l+e+g++l++lda a+++gPG+ftg+r+G+ +A+glal++++P++gV++l+ +a+ a  +++  +  v++++++++++
     CTQ28757.1  28 EICPREHTQRILPLVQEVLTESGTTLSELDALAFGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLATMAQGAWRKTGAtR--VLAAIDARMGE 121
                    6788***********************************************************************86665567..*********** PP

                    EEEECTTEEEEEEE CS
  Peptidase_M22 118 vylvkegryeilge 131
                    vy++   +y++ ++
     CTQ28757.1 122 VYWA---EYQRDEQ 132
                    ****...8887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1767.43
//
Query:       CTQ28758.1  [L=636]
Description: putative ATP-dependent helicase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-34  118.4   0.0      6e-34  117.7   0.0    1.4  1  Helicase_C_2  Helicase C-terminal domain
    7.7e-08   32.3   1.2     0.0003   20.6   0.1    3.5  4  DEAD          DEAD/DEAH box helicase
    5.5e-07   29.8   0.0    1.4e-05   25.2   0.0    2.7  2  ResIII        Type III restriction enzyme, res subunit
    4.6e-05   23.1   0.0    8.2e-05   22.3   0.0    1.3  1  DEAD_2        DEAD_2
      0.008   15.5   0.4       0.15   11.3   0.1    2.2  2  DUF2075       Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
       0.15   11.9   0.0       0.46   10.4   0.0    1.8  1  POTRA_2       POTRA domain, ShlB-type


Domain annotation for each model (and alignments):
>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.0     2e-37     6e-34       4     170 ..     459     616 ..     456     617 .. 0.96

  Alignments for each domain:
  == domain 1  score: 117.7 bits;  conditional E-value: 2e-37
  Helicase_C_2   4 llevvpggvlvffpSyklleevverlkeeleskkieifveekeesrekvleeykekkkkgaillavcrGklsEGidfsddllraviivglPfpnpkd 100
                   l+e+  g+++++++S++++++++e++++++    ++++ + +e s+ ++l+++ +    +a+l+a+   +++EG+d+++d+l++vii +lPf +p+d
    CTQ28758.1 459 LIEANDGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQ-GETSKGQLLQQFVS--AGNALLVATS--SFWEGVDVRGDALSLVIIDKLPFTSPDD 547
                   6788999*********************99...599***9.**************..*********9..**************************** PP

  Helicase_C_2 101 peveakreyldekgkknsgkewylpealravnQaiGRliRhkdDygaivllDeRfakeeireklpkwlre 170
                   p ++a++e ++ +g+ ++++e++lp+a+ +++Q++GRliR+ dD+g++v++D+R+  + +++ ++ +l++
    CTQ28758.1 548 PLLKARMEDCRLRGG-DPFDEVQLPDAVITLKQGVGRLIRDIDDRGVLVICDNRLVMRPYGAVFLASLPP 616
                   ***************.**********************************************99999876 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1     1e-07    0.0003       9      66 ..      33      82 ..      25     140 .. 0.73
   2 !    6.7   0.1    0.0018       5.5      97     136 ..     190     233 ..     180     257 .. 0.68
   3 ?   -1.7   0.0      0.72   2.1e+03     153     170 ..     385     400 ..     375     406 .. 0.64
   4 ?    0.8   0.0      0.12   3.7e+02      45     109 ..     462     523 ..     448     539 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1e-07
                HHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  9 plilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnn 66
                ++i   + ++v+a TG+GKT a+l p+l        + ++k++i + +++L  q +++
  CTQ28758.1 33 EAIEASRPLVVEAGTGTGKTYAYLAPAL--------RAKKKVIISTGSKALQDQLYSR 82
                5566778899******************........66789*************9974 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0018
                 TCSEEEEEHHH.HHHHH..HCTSSH..CTTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxx.xxxxx..xxxxxx..xxxxxxxxxxxxxxxxxx RF
        DEAD  97 gvdivvgtpgr.lddll..stgkln..lsqvrflVlDEadrlldq 136
                 ++d+vv ++   l+d++  +   +   + + +++++DEa++l d 
  CTQ28758.1 190 DADVVVVNHHLfLADMVvkE-SGFAelIPEAEVMIFDEAHQLPDI 233
                 47777777765155577643.3333468899*********99775 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.72
                 CTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxx RF
        DEAD 153 tcdgklqrqvivlSATlp 170
                  ++++ +   i+ SATl+
  CTQ28758.1 385 MAQKSGS--WIFTSATLS 400
                 3333333..9******98 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.12
                 STS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH.HTTCSEEEEEHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
        DEAD  45 ktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl.dngvdivvgtpgrld 109
                  +  ++++++ +++++++ +++++  +    l vl + g++++ + l+++ ++g  ++v+t + + 
  CTQ28758.1 462 ANDGRCFMLCTSHAMMRDLAEQFRATMT---LPVL-LQGETSKGQLLQQFvSAGNALLVATSSFWE 523
                 5667999****************99999...5665.446566655555552466888888876655 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   4.7e-09   1.4e-05       2     146 ..      18     232 ..      17     257 .. 0.71
   2 ?   -1.7   0.0      0.87   2.6e+03     135     147 ..     399     411 ..     376     431 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 4.7e-09
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHG.......................... CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleef.......................... 74 
                 +++re Q ++  ++ e++  +  + +++++ TGtGKT+ +++ + r +k     k+++   +k+l +q++++                           
  CTQ28758.1  18 FKPREPQRQMAVAVSEAI--EASRPLVVEAGTGTGKTYAYLAPALRAKK-----KVIISTGSKALQDQLYSRDlptvakalkftgklallkgrsnylcl 109
                 789***************..5999******************9999999.....799999*********954436666777778888888888888888 PP

                 ...............................................GGGTGG....GEEEESSS-B--.............................. CS
      ResIII  75 ...............................................kkflseaykeigkkvsgdkkka.........................kekds 101
                                                                +                                               +k++
  CTQ28758.1 110 erleqqalaggdlpvqtlsdvillrswsnqtqdgdistcasvaedsqA--------------------WplvtstndnclgsdcplykdcfvvkARKKA 188
                 888888888888888888887776555544444444333222222220....................2444444444555566666666666688888 PP

                 ..-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS CS
      ResIII 102 tnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlga 146
                  +++++v++ + + ad+   +e     l  + +v+i+DEaH l +
  CTQ28758.1 189 MDADVVVVNHHLFLADMVV-KESGFAELIPEAEVMIFDEAHQLPD 232
                 8999999999999999933.2222233333444********9987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.87
                 EEEEETGGGTTS. CS
      ResIII 135 viiiDEaHrlgak 147
                 + ++D  H+++a 
  CTQ28758.1 399 LSVNDDLHHFTAR 411
                 6799*****9986 PP

>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.7e-08   8.2e-05     112     176 .]     181     247 ..     170     247 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.7e-08
                 HHHHHHHHCCTSEEEEEHHHHTSCCCHHHHH..T..GCGCEEEECTCCCHHHHHHHCC-EEEECHHH CS
      DEAD_2 112 YylsrelledadiiilpYqyLldekireslk..gislknsivilDEAhNiedvceeaasveiseesl 176
                    +r+ + dad++++ ++++l   + ++    ++  + +++i+DEAh + d++ +    ++s+++l
  CTQ28758.1 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGfaELIPEAEVMIFDEAHQLPDIASQYFGQSLSSRQL 247
                 446799999**************999998876777899*******************9999999886 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.031        93       4      48 ..      41      80 ..      38      92 .. 0.77
   2 !   11.3   0.1     5e-05      0.15      69     121 ..     193     252 ..     176     274 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.031
     DUF2075  4 vlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlr 48
                ++V+ ++GtGKt+  l+ + ++     ++++++ +++++l++ l+
  CTQ28758.1 41 LVVEAGTGTGKTYAYLAPALRA-----KKKVIISTGSKALQDQLY 80
                689999*******999988887.....566666666666666665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 5e-05
     DUF2075  69 sfinnlsef......kkaeekkeepkedvvivDEAhrlltksdqaekqse.enqlkelmk 121
                  ++ n + f      k+    +  p+++v+i+DEAh l + ++q++ qs    ql +l k
  CTQ28758.1 193 VVVVNHHLFladmvvKESGFAELIPEAEVMIFDEAHQLPDIASQYFGQSLsSRQLLDLAK 252
                 55555555555555666677778899**************99998888764667776655 PP

>> POTRA_2  POTRA domain, ShlB-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00015      0.46      16      48 ..     226     259 ..     220     261 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
                 HC.CHHHHHCCCSSSEEEHHHHHHHHHHHHHHHH CS
     POTRA_2  16 le.eleallqpylgkclgladlnqlakeltnayi 48 
                 ++ +l  ++ +y g+ l++ +l  lak++t ay+
  CTQ28758.1 226 EAhQLPDIASQYFGQSLSSRQLLDLAKDITIAYR 259
                 554888999***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 4898.32
//
Query:       CTQ28759.1  [L=114]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-28   99.1   0.4    1.8e-28   99.0   0.4    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.4   9.8e-33   1.8e-28       2     121 .]       3     114 .]       2     114 .] 0.97

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 9.8e-33
                    TTSTTTSSS-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS-- CS
  Ribonuc_L-PSP   2 eaapaaaapYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaP 97 
                    +++++a a++s++v +++++y++G +p +     l ++d+ eqt+++l++++avL+++g+++s+++++t+Flad +dfa++n++++ ++ +  +aP
     CTQ28759.1   3 ITRIDAEARWSDVVIHNQTLYYTG-VPAN-----L-DADAFEQTANTLAQIDAVLEKQGSDKSRILDATIFLADKSDFAAMNKAWDAWVVAG-HAP 90 
                    67999*******************.9998.....4.9*******************************************************.8** PP

                    EEEEEE-SBSGGG-SEEEEEEEE- CS
  Ribonuc_L-PSP  98 arsaveVaaLpkgakvEIeaiavv 121
                    +r++ve++ +++++kvEI++ia+v
     CTQ28759.1  91 VRCTVEATLMNPQYKVEIKIIAAV 114
                    **********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 835.89
//
Query:       CTQ28760.1  [L=61]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-27   94.2   3.8    2.9e-27   94.0   3.8    1.1  1  UPF0181   Uncharacterised protein family (UPF0181)


Domain annotation for each model (and alignments):
>> UPF0181  Uncharacterised protein family (UPF0181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   3.8   1.6e-31   2.9e-27       1      49 [.       1      49 [.       1      50 [. 0.98

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 1.6e-31
     UPF0181  1 MldnllsLtHeqQQqAVEkIqeLmaqGmssgeAIalVAqelReehqake 49
                M+++l+sL+HeqQQ+AVE+I+eLmaqG+ssg+AIalVA+elR++h++++
  CTQ28760.1  1 MFAGLPSLSHEQQQKAVERIHELMAQGISSGQAIALVAEELRATHTGEQ 49
                9********************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 503.65
//
Query:       CTQ28761.1  [L=451]
Description: aminodeoxychorismate synthase, subunit I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-91  304.1   0.0    1.1e-90  303.7   0.0    1.1  1  Chorismate_bind  chorismate binding enzyme
    7.8e-24   84.5   0.0    3.2e-23   82.5   0.0    2.0  2  Anth_synt_I_N    Anthranilate synthase component I, N termina


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.7   0.0   1.2e-94   1.1e-90       1     258 []     187     441 ..     187     441 .. 0.99

  Alignments for each domain:
  == domain 1  score: 303.7 bits;  conditional E-value: 1.2e-94
                      .HCHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETTSEEEEECEEEEEEH CS
  Chorismate_bind   1 sredYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsellgaSPElllkveggrrietepiaGTrar 94 
                      sr++Y e++++v++++++gd+y+v+l++r++a+     d ++++r+l a n+ap+s++++l++  +l+ SPE+++++++g +i+t+pi+GT +r
       CTQ28761.1 187 SRQQYGEKFRQVQAYLHSGDCYQVNLAQRFQAS--YVGDEWQAFRQLNAVNRAPFSAFIRLDEGAILSLSPERFIQLRQG-EIQTRPIKGTLPR 277
                      689******************************..8899***************************************77.************* PP

                      SSSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESHH CS
  Chorismate_bind  95 gktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkk 188
                       ++p +d++++e+l++++K+raE+lmivdl+rnd+g+va pgsv+vpelf ve +++v+hlvsti+++l+ ++++ dll+a fP+g++tGaPk 
       CTQ28761.1 278 LDSPLADAQQAEKLANSPKDRAENLMIVDLMRNDIGRVAVPGSVRVPELFVVEPFPAVHHLVSTITARLPMTLHASDLLRAAFPGGSITGAPKV 371
                      ********************************************************************************************** PP

                      HHHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 189 rameiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      rameiidelE++rR++++G++gyl+  g+++++++IRt+ + +++l++ aG+GIvadS+ +aEy+Et +K
       CTQ28761.1 372 RAMEIIDELEPQRRNAWCGSIGYLSYCGNMDTSITIRTLTAWQGQLYCSAGGGIVADSEEAAEYQETFDK 441
                      *****************************************8888**********************988 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.0   3.6e-27   3.2e-23       9     141 ..      20     151 ..      14     152 .. 0.91
   2 ?   -1.5   0.0      0.31   2.7e+03      91     100 ..     388     397 ..     373     398 .. 0.78

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 3.6e-27
  Anth_synt_I_N   9 ylklaeeehkflLeSaeneggegrySfigldpflelkskngevevegpegeeleeeepldalrellerfrsaedseptelpfvgGlvGylgYDlvr 104
                    ++ l++ ++++lL S+  ++  +r+ ++ ++p+++l ++++++ v + e    + e+pl++l++ l+r   + ++ +++lpf gG++G++gYDl r
     CTQ28761.1  20 FAPLSALPWAMLLHSGFADHPHNRFDILVAAPRATLLTRGEQTWVDDGETVVVSAEDPLQLLQQQLDRQPFT-PQPHDDLPFLGGALGLFGYDLGR 114
                    667888899*******999999**************999999999996666666777*************88.66789****************** PP

  Anth_synt_I_N 105 eieklpksakddlnlpdarlilydtlivfDhkerrly 141
                     +e+lp++a++d +l d+   +yd+++++Dh+++++ 
     CTQ28761.1 115 RFERLPSHAQADIALADMAVGIYDWALIVDHQRQQIS 151
                    *********************************9975 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.31
  Anth_synt_I_N  91 vgGlvGylgY 100
                     +G +Gyl+Y
     CTQ28761.1 388 WCGSIGYLSY 397
                    5799*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3346.39
//
Query:       CTQ28762.1  [L=192]
Description: putative NUDIX hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-15   55.7   0.0    7.8e-15   55.1   0.0    1.4  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   4.3e-19   7.8e-15       2     115 ..      30     143 ..      29     170 .. 0.74

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 4.3e-19
                 EEEEEEEE.EEETTSEEEEEEES..SSSTTT.EESSEEECBTTS.HHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSG CS
       NUDIX   2 lrravgvv.llnekgevLlvrrs..kkpfpg.WelPgGkvepgE.tpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleevege 95 
                 +++av v  +++++  +Ll++rs   ++++g  ++PgG v+  + t+ +AA+RE++EE+ +++e +e++g+l+ +++++g++ +          +v g 
  CTQ28762.1  30 RQAAVLVPiVRRPQPGLLLTQRSplLRKHAGqVAFPGGAVDNTDaTLIAAALREAQEEVAIPPEAVEVIGVLPPVDSVTGFQVT----------PVVGI 118
                 6789999977777766*********888888578**********9*************************88777777666655..........33333 PP

                 CSST.....STTTEEEEEEEEHHHH CS
       NUDIX  96 lepn.....denevsevrwvpleel 115
                 ++p+       +evs+v  +pl+e+
  CTQ28762.1 119 IPPDlhyhaSQDEVSAVFEMPLAEA 143
                 3333333334445555544555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1533.22
//
Query:       CTQ28763.1  [L=454]
Description: L-serine deaminase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-94  316.9   6.0    1.5e-94  316.5   6.0    1.1  1  SDH_alpha  Serine dehydratase alpha chain
    2.4e-56  190.4   0.0    5.1e-56  189.3   0.0    1.6  1  SDH_beta   Serine dehydratase beta chain


Domain annotation for each model (and alignments):
>> SDH_alpha  Serine dehydratase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.5   6.0   1.6e-98   1.5e-94       2     260 .]     184     448 ..     183     448 .. 0.92

  Alignments for each domain:
  == domain 1  score: 316.5 bits;  conditional E-value: 1.6e-98
   SDH_alpha   2 kgleilelvteneeeaakrlsaeeidakleeiwevmdeaieeglsnkaiaeegllpgelkvkr.ayaalgkrll.............dklsaaAlavae 86 
                 +gl+++ +v++ne  a+ + s++ei++++ ++w++m+++i++g++    + eg+lpg l+v r a  al++ l+             d+++++Alav+e
  CTQ28763.1 184 TGLSLSGMVIQNE-LAL-H-SKKEIEDYFANVWQTMRACIDRGMN----T-EGVLPGPLRVPRrA-SALRRLLVasdklssdpmnvvDWVNMFALAVNE 273
                 68899999***99.888.5.59*********************98....6.***********955.6666666344444554445558*********** PP

   SDH_alpha  87 mnaaggrvvtaptsGaaGilPavlvalleelkas..eellraLllaaligilikrnasisgAecGcqaevGvacamAAaglaallggspeqienAaeia 183
                 +naaggrvvtapt+Ga+Gi+Pavl+++ + +++   e  +r++++ ++ig l+k nasisgAe+Gcq+evGvac+mAAagla+llg+speq++ Aaei+
  CTQ28763.1 274 ENAAGGRVVTAPTNGACGIVPAVLAYYDHFIESVspEIYIRYFMACGAIGALYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGASPEQVCVAAEIG 372
                 **************************8885544499*************************************************************** PP

   SDH_alpha 184 lehllGltCDpvaGlvkipCiernalgavkAvtaarlalagdggegivsldevietmrntgkdmsekyketseggLa 260
                 +eh+lGltCDpvaG v++pCierna++ vkA++aar+a++ ++ e +vsld+vietm++tgkdm++ky+ets+ggLa
  CTQ28763.1 373 MEHNLGLTCDPVAGQVQVPCIERNAIASVKAINAARMAMRRTS-EPRVSLDKVIETMYETGKDMNAKYRETSRGGLA 448
                 *****************************************88.*******************************97 PP

>> SDH_beta  Serine dehydratase beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.3   0.0   5.7e-60   5.1e-56       1     154 [.       3     155 ..       3     156 .. 0.98

  Alignments for each domain:
  == domain 1  score: 189.3 bits;  conditional E-value: 5.7e-60
                 XXXXXXXXXXXXX-TTTHHHHHHHHHHHHHHHHTT-TTT--EEEEEEEHHHHHS-TTSSHHHHHHHHHTT--TTTS-GGGHHHHHHHHHHHTEEEETT. CS
    SDH_beta   1 SvfdlfkiGiGPSSShTvgpmraaaaFveelkekelleevarirveLyGsLaatgkghgtdeAvllGLegeepetvdpdavesrleeieeekklklag. 98 
                 S+fd+fk+GiGPSSShTvgpm+a+++Fv++l ek+ll++v+r++v++yGsL++tgkgh+td A+++GL+g++p+tvd+da+++ ++++e++++l la+ 
  CTQ28763.1   3 SLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLNAVTRVAVDVYGSLSLTGKGHHTDIAIIMGLAGNQPDTVDIDAIPAFIRDVEARGRLLLANg 101
                 89**********************************************************************************************998 PP

                 TEEEE--HHHHEEEETT---SS-SSEEEEEEE-TTS-EEEEEEEEEETTTEEEETT CS
    SDH_beta  99 ekeiefdeeedivlekkkslplhsnglelsaldeegellleetyySiGGGfiveee 154
                 ++e++f  ++ + ++++ +lplh+ng++++a+++e+ +++ +tyySiGGGfiv+ee
  CTQ28763.1 102 QHEVDFPADDGMRFRSD-NLPLHENGMTIHAWAGEK-EIYCKTYYSIGGGFIVDEE 155
                 9*************997.9**************997.89**************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3451.66
//
Query:       CTQ28764.1  [L=525]
Description: putative cyclic di-GMP phosphodiesterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-58  197.0   0.0    4.7e-58  196.5   0.0    1.2  1  EAL        EAL domain
    2.5e-27   95.7   0.1    4.8e-27   94.8   0.1    1.3  1  CSS-motif  CSS motif domain associated with EAL


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.5   0.0   5.2e-62   4.7e-58       3     238 .]     272     501 ..     270     501 .. 0.94

  Alignments for each domain:
  == domain 1  score: 196.5 bits;  conditional E-value: 5.2e-62
                 HHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--CHHCC-CC CS
         EAL   3 alrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlspasladee 101
                 +++  ++++e+al+ QP  d+++g++ g+e+llrw++p++g+ispe f+p+ae ++l+  l+r+v+ ++ ++l+++ +  d++++++in+ ++++a+  
  CTQ28764.1 272 EISLGISAREFALWCQPLQDARSGRCCGVEILLRWNNPRRGTISPEVFIPIAEGNNLIIPLTRYVIAETARRLDAFPR--DRHFHIAINVAARHFANGL 368
                 56667899*******************************************************************973..788899************* PP

                 HHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHH.HHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHH CS
         EAL 102 fleelrellkqsgpspsrLvleitesellarlealqeevlar.LralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalia 199
                 +l++l +    s  + ++Lv+e+te+++l   ++   +++a+ L+ +G+++a+ddfgtg++sls l +l+pd++K+drs+++ +  d+ ++++++ +ia
  CTQ28764.1 369 LLRDLHNYW-FSVDPVQQLVVELTERDVL---QDGD-QHMAEhLHFKGVQLAIDDFGTGNTSLSWLEKLRPDVLKIDRSFTSSVGIDSVNATVTDIIIA 462
                 ******999.78888888********995...4444.444533888***************************************************** PP

                 HHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 200 lakelgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 la++l+i +vaegVet eq + lr+ g+d +QG+++++p
  CTQ28764.1 463 LANRLHIVTVAEGVETLEQESYLRSHGVDVLQGFYYARP 501
                 *************************************99 PP

>> CSS-motif  CSS motif domain associated with EAL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   0.1   5.4e-31   4.8e-27       6     202 ..      47     236 ..      43     238 .. 0.88

  Alignments for each domain:
  == domain 1  score: 94.8 bits;  conditional E-value: 5.4e-31
   CSS-motif   6 dalaeralerledvldqadqaldelqplagrpCseahlaaLrrivafspyvrdiglvkdgrlyCSSlwGeldlplpllppdltsrdgvrlwllrgtplv 104
                 ++ a++ ++ l+d+l+ ++  + +l+pl+g+pC ++h ++Lr+++a  + +r+++lv  g++yCSS++G+++++l++l+p+    +   l+++ +++l 
  CTQ28764.1  47 RTAASQRVAALNDILRPLSAQRATLLPLVGKPCPDIH-LTLRKMAASLQTIRSVALVTSGIVYCSSIFGPRQADLHRLQPA-LPAPRPLLLFSNDSSLL 143
                 5677888899***************************.*******************************************.66666666777788*** PP

   CSS-motif 105 pdrpalvlrrgnyavvispgv..fidgqylpelllavsssdgeqlalvvgpaallldgrvlslaeliasearssgalyvrakserypltvvvyappasl 201
                 ++ p+l+ +++ +    + gv   +++ +l +l+l   s  +  ++l+v      +d++++s + l + ++ ++g++++r +s+++p+tv +++p as+
  CTQ28764.1 144 KGSPVLIQWYPAAESGLD-GVmlVVNIELLGTLILNEKSALISDVSLQV------GDRYFSSRHGLLEKTHVPQGTVIYRQRSTEFPFTVNINGPGASA 235
                 ***************999.887777888886665555555555566666......78899***********************************9998 PP

   CSS-motif 202 l 202
                 +
  CTQ28764.1 236 I 236
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4156.91
//
Query:       CTQ28765.1  [L=519]
Description: putative membrane protein fused with conserved domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-49  165.7  14.5    1.2e-48  165.2  14.5    1.2  1  TerC       Integral membrane protein TerC family
    9.9e-18   63.9   0.1    2.4e-17   62.7   0.1    1.7  1  CorC_HlyC  Transporter associated domain
    8.2e-05   23.0   0.5       0.05   14.1   0.1    3.1  3  CBS        CBS domain
  ------ inclusion threshold ------
      0.045   13.5   8.5      0.031   14.0   5.2    2.0  2  DUF475     Protein of unknown function (DUF475)
        2.9    5.9   5.2        4.2    5.4   5.2    1.1  1  UPF0182    Uncharacterised protein family (UPF0182)


Domain annotation for each model (and alignments):
>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.2  14.5   3.4e-52   1.2e-48       1     180 [.      14     203 ..      14     204 .. 0.95

  Alignments for each domain:
  == domain 1  score: 165.2 bits;  conditional E-value: 3.4e-52
        TerC   1 ltlvlleivLsiDNlvviallvkklpeeqqkkalllGilgAlvlRillillavallel...........f...dlilligglfLlytavkellekrlen 85 
                 ltl++leivL+iDNlv+ia+l+ klp++q++ka+l+G+ +Alv+R+ l+ +++++++l           f   dli+l+gg+fLl++a+ el+e+    
  CTQ28765.1  14 LTLIVLEIVLGIDNLVFIAILADKLPPKQRDKARLIGLSLALVMRLGLLSVISWMVTLtkplitiadfsFsgrDLIMLLGGIFLLFKATTELHERL--- 109
                 689************************************************************9999883556*******************9865... PP

        TerC  86 klvkeekkkkkktkstllavviqielaDlvfslDSvlaavaitsdlfivitavilsilvlrflakllakllerfptlkylalalllligvklvle 180
                   ++++++ + k  +++++vv+qi+++D vfslD v++av++ ++l+++++av+++++++ +++k+l+++++++pt+ +l+l++ll+ig++lv+e
  CTQ28765.1 110 -ENRQHDAGHGKGYASFWVVVLQIVVLDAVFSLDAVITAVGMVNHLPVMMAAVVIAMILMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAE 203
                 .468888888999999****************************************************************************987 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.1   6.6e-21   2.4e-17       2      78 ..     432     509 ..     431     512 .. 0.91

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 6.6e-21
                 EECTTEEEEETT-BHHHHHHHHTST..THH.CT-SBHHHHHHHHH-S---TT-EEEEEETTEEEEEEEEETTCEEEEEEE CS
   CorC_HlyC   2 eldegsylvdGslpldeleeelgle..lpe.edyeTlgGlllellgriPkegesvevdleglrftVlemdgrrIkkvrve 78 
                 ++d++ +l++Gs++l+ l+++lgl+  + + ed  T++Gl++++ g+iP+ g+  +v l+ l ftV+e+++ r++ vr  
  CTQ28765.1 432 VIDGDGWLIKGSTDLHALQQALGLDplINDdEDIATVAGLVISANGHIPRIGD--VVSLPPLHFTVVEANDYRVDLVRAV 509
                 57999*******************888666579********************..77777*****************975 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0     0.005        18       4      55 ..     303     357 ..     300     359 .. 0.76
   2 !   14.1   0.1   1.4e-05      0.05       7      56 ..     370     419 ..     363     420 .. 0.78
   3 ?   -3.5   0.0       4.4   1.6e+04      12      29 ..     459     476 ..     457     482 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.005
                 HSBS..SCEEEETTSBHHHHHHHHHHHTSSEE.EEE.ETTTBEEEEEEHHHHHHHH CS
         CBS   4 imtr..dvvtvppdttleealelmrekgvsrl.PVV.dedgklvGivtlrDllral 55 
                 imt+  ++  v+ +++  e+ +++ ++ + +l PV   e ++++Giv  +  l al
  CTQ28765.1 303 IMTPrgEISWVDAEQSEDEIRRQLLSSPH-SLfPVCrGELDEIIGIVRAKEMLVAL 357
                 66666666678889999999999777776.555**9877778*****999888776 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.4e-05
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEEE.ETTTBEEEEEEHHHHHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPVV.dedgklvGivtlrDllrall 56 
                 ++ ++vp++ +   +l  +r+++ +++ +V +e g + G+vt  D+l+a++
  CTQ28765.1 370 SPAIVVPETLDPINLLGVLRRAR-GSFVIVtNEFGVVQGLVTPLDVLEAIA 419
                 56678888888888999997766.78844569999555***********97 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 4.4
                 EETTSBHHHHHHHHHHHT CS
         CBS  12 vppdttleealelmrekg 29 
                 ++ d++++ ++ l ++++
  CTQ28765.1 459 INDDEDIATVAGLVISAN 476
                 566777888887755544 PP

>> DUF475  Protein of unknown function (DUF475)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   5.2   8.7e-06     0.031     106     222 ..      54     165 ..      27     179 .. 0.64
   2 ?    1.0   0.8     0.083     3e+02     118     152 ..     160     194 ..     157     209 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.7e-06
      DUF475 106 kplaklgkldavsvvivlvlllllaallakkaeqrqkvllagllgl.ltyllvdglerlfekdeaakaaavraagkaglalflylevldasfsfdGviG 203
                 +++++lg l ++s +++l   l++ a ++ +       l+  l g+ l++    +l++ +e+   +++a   ++ ++  ++ l + vlda fs+d vi 
  CTQ28765.1  54 ALVMRLGLLSVISWMVTLTKPLITIADFSFSGR----DLIMLLGGIfLLFKATTELHERLEN--RQHDAGHGKGYASFWVVVLQIVVLDAVFSLDAVIT 146
                 455666666666666666555555555544433....3444444430233344445555554..33455566666666788999*************** PP

      DUF475 204 afaitkdivlialGlgiga 222
                 a  + + + +++  + i+ 
  CTQ28765.1 147 AVGMVNHLPVMMAAVVIAM 165
                 ***9999877777666654 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.083
      DUF475 118 svvivlvlllllaallakkaeqrqkvllagllgll 152
                  vvi+++l+ll+++ l++  +q+ +v++  l  ll
  CTQ28765.1 160 AVVIAMILMLLASKPLTRFVNQHPTVVVLCLSFLL 194
                 56677777777777777777777766665554333 PP

>> UPF0182  Uncharacterised protein family (UPF0182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   5.2    0.0012       4.2     160     279 ..      63     178 ..      45     186 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0012
     UPF0182 160 vllvyllsgeslgirl...kfaelskaarrhlsvllallllllalsywLdryellyskrgvvtGagYtdvnavlpaktilavialvvavlllvaivlkk 255
                 +++  +++      ++   + a++s + r  + +l++++ll++a   + +r e   +  ++  G gY    +v+   ++l ++  + av+ +v +v++ 
  CTQ28765.1  63 SVISWMVTL-----TKpliTIADFSFSGRDLIMLLGGIFLLFKATTELHERLENRQH--DAGHGKGYASFWVVVLQIVVLDAVFSLDAVITAVGMVNHL 154
                 222222111.....1123455788888899999999999999999999888776655..5899*********999999999999999999999887765 PP

     UPF0182 256 lklplialallvllaillgvvlpa 279
                   ++++ +++++l++++ + ++  
  CTQ28765.1 155 PVMMAAVVIAMILMLLASKPLTRF 178
                 444444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3655.83
//
Query:       CTQ28766.1  [L=323]
Description: fused mannose-specific PTS enzymes: IIA component; IIB component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-55  185.4   1.1    1.1e-54  184.7   1.1    1.3  1  PTSIIB_sorb    PTS system sorbose subfamily IIB component
    5.7e-36  123.3   0.0    1.3e-35  122.1   0.0    1.6  1  EIIA-man       PTS system fructose IIA component
  ------ inclusion threshold ------
       0.36   11.4   6.3       0.33   11.6   3.3    2.4  3  Ribosomal_60s  60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> PTSIIB_sorb  PTS system sorbose subfamily IIB component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.7   1.1   1.8e-58   1.1e-54       1     147 [.     164     310 ..     164     311 .. 0.99

  Alignments for each domain:
  == domain 1  score: 184.7 bits;  conditional E-value: 1.8e-58
                  EEEEEEETTGCGTTHHHHHHCCCTTSEEEEE-HHHHC-HHHHHHHHCCS-TTSEEEEE-HHHHHHHHHCB-.TTEEEEEEESSHHHHHHHHHTT---S CS
  PTSIIB_sorb   1 iklvRiDdRLiHGqVataWtkelkanriivvdDevakdelqkellkmaapsgvkvsilsvekaievlkkakvekekvlllvknpedalklveggvkik 98 
                  i l+RiDdRLiHGqVat+Wtke++++riivv+Deva+d+++k+ll+++ap+gv++++++v+k+i+v++++k+  ++v+ll++np+d+ ++veggvki+
   CTQ28766.1 164 IGLARIDDRLIHGQVATRWTKETNVTRIIVVSDEVAADTVRKTLLTQVAPPGVTAHVVDVAKMIRVYNNPKYAGQRVMLLFTNPTDVERIVEGGVKIT 261
                  679*********************************************************************************************** PP

                  EEEEEEB---TTSEESSSSBEE-HHHHHHHHHHHHC--EEEE-SSTTS- CS
  PTSIIB_sorb  99 evnvGnmakkegkkqvsksvslteeeiealkelaekgveveiqkvpsdk 147
                  +vn+G+ma+++gk+qv++++s+++++iea+k+l+++g+e+e++kv +d+
   CTQ28766.1 262 SVNIGGMAFRQGKTQVNNAISVDAKDIEAFKKLNARGIELEARKVSTDP 310
                  *********************************************9987 PP

>> EIIA-man  PTS system fructose IIA component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.0   2.1e-39   1.3e-35       2     113 ..       5     116 ..       4     119 .. 0.98

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 2.1e-39
                 EEEEESBCHHHHHHHHHHCCHSSS-SCEEEEEC-TTS-CCCHHHHHHHHHCTS--TTEEEEEESSCCCHHHHHHHHCCTTSTTEEEEEC--CHHHHHHH CS
    EIIA-man   2 ivivsHgelAeglaelleelagedqekviavggtpdesigtlaekikeaieevdsedevlvLvDlggatpfneaaleleekeelevitgvnlPlveeav 100
                 ivi +Hg++Ae+l++++e+l+ge qe+v +++++p+e+++tl ek++++++++d++++vl+LvD +g++pfn+a++++ +ke++evi+gvn+P+++e++
  CTQ28766.1   5 IVIGTHGWAAEQLLKTAEMLLGE-QENVGWIDFVPGENAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETF 102
                 9**********************.9************************************************************************** PP

                 HHH.CHHHCCHHHH CS
    EIIA-man 101 aar.asaslgelve 113
                 +ar + +s++elv+
  CTQ28766.1 103 MARdDDPSFDELVA 116
                 ***99******998 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.47   2.8e+03      27      47 ..      34      54 ..      15      77 .. 0.78
   2 ?   11.6   3.3   5.5e-05      0.33      23      66 ..      99     154 ..      88     159 .. 0.70
   3 ?   -2.7   0.0       1.5   9.1e+03      10      25 ..     293     308 ..     282     313 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.47
                   XXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s 27 vkalegkdieellangaakla 47
                   ++++ g++ e l+++ +a+la
     CTQ28766.1 34 IDFVPGENAETLIEKYNAQLA 54
                   577888999999999999876 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5.5e-05
                    XXXXXXXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  23 vkllvkalegkdieellangaakla............aaaaaaaaaaaaaaaaaaa 66 
                    v+++++   + + +el+a + + ++             aa+a+a+aaa++aaa+a+
     CTQ28766.1  99 VETFMARDDDPSFDELVALAVETGSegvkalkakpveKAAPAPAPAAAPKAAAPAK 154
                    56666666666666666655555555556777777777888899999888888887 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.5
                    XXXXXXXXXXXXXXXX CS
  Ribosomal_60s  10 vlkaagveveaarvkl 25 
                     l+a g+e+ea +v++
     CTQ28766.1 293 KLNARGIELEARKVST 308
                    3677788888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2594.90
//
Query:       CTQ28767.1  [L=266]
Description: mannose-specific enzyme IIC component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-75  252.7  38.3    3.2e-75  252.5  38.3    1.0  1  EII-Sor          PTS system sorbose-specific iic component
  ------ inclusion threshold ------
        3.4    7.1   7.4         11    5.5   2.0    2.4  2  Poxvirus_B22R_C  Poxvirus B22R protein C-terminal


Domain annotation for each model (and alignments):
>> EII-Sor  PTS system sorbose-specific iic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.5  38.3   3.5e-79   3.2e-75       1     233 []       5     237 ..       5     237 .. 0.99

  Alignments for each domain:
  == domain 1  score: 252.5 bits;  conditional E-value: 3.5e-79
     EII-Sor   1 liqailiglvaflagldsllgeltlerPlvagllvGlilGdlqtGlivGatlqlvylGvvtiGgavppdaalagiigtalailsgasaeaavalavpva 99 
                 l+q++l+++va++ag++s+l+e++++rPl+a++l+G++lGd++tG+i+G+tl++++lG+++iG+av+pdaala+ii+t+l+i+ ++s+ a++ala+p+a
  CTQ28767.1   5 LLQIVLVFIVACIAGMESVLDEFQFHRPLIACTLIGAVLGDMKTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTVLVIAGHQSIGAGIALAIPLA 103
                 58************************************************************************************************* PP

     EII-Sor 100 llgqllttlvrtinsvfvhkadkaaekgnlkkierlhlllplllglllrfipvflalyfgaeavqallnaipewllkgLsvaGglLpavGfAmllkvml 198
                 ++gq+lt++vrti+++f+h adkaae+gnl ++++lh+  ++l+++++++++v++a+ +g++ vq llnaipe++++gL++aGg++++vG+Am++++m 
  CTQ28767.1 104 AAGQVLTIIVRTITVAFQHAADKAAENGNLTALSWLHVSSLFLQAMRIAIPAVIVAISVGTSEVQGLLNAIPEVVTSGLNIAGGMIVVVGYAMVINMMR 202
                 *************************************************************************************************** PP

     EII-Sor 199 kkkllpffllGFvlaaylklnliavaiigvaiAli 233
                    l+pff lGFv aa++++nl+a+++ig+++A++
  CTQ28767.1 203 AGYLMPFFYLGFVTAAFTNFNLVALGVIGAVMAIL 237
                 *********************************85 PP

>> Poxvirus_B22R_C  Poxvirus B22R protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   2.0    0.0012        11       3      46 ..      76     119 ..      74     130 .. 0.90
   2 ?    4.5   0.3    0.0024        22       2      34 ..     173     205 ..     172     220 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0012
  Poxvirus_B22R_C   3 vvevvssvlskvGstlaiaGivaspkvaiaGlalqaisgliDig 46 
                      ++ ++s+vl   G     aGi+ +  +a+aG +l++i   i ++
       CTQ28767.1  76 LASIISTVLVIAGHQSIGAGIALAIPLAAAGQVLTIIVRTITVA 119
                      6789*******************************998887765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0024
  Poxvirus_B22R_C   2 kvvevvssvlskvGstlaiaGivaspkvaiaGl 34 
                      ++ evv+s l+  G+++ + G ++  +++ aG 
       CTQ28767.1 173 AIPEVVTSGLNIAGGMIVVVGYAMVINMMRAGY 205
                      6889************************99995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2027.81
//
Query:       CTQ28768.1  [L=283]
Description: mannose-specific enzyme IID component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-112  375.3   1.3   1.4e-112  375.2   1.3    1.0  1  EIID-AGA  PTS system mannose/fructose/sorbose family IID comp


Domain annotation for each model (and alignments):
>> EIID-AGA  PTS system mannose/fructose/sorbose family IID component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.2   1.3  8.1e-117  1.4e-112       1     265 []      12     281 ..      12     281 .. 0.97

  Alignments for each domain:
  == domain 1  score: 375.2 bits;  conditional E-value: 8.1e-117
    EIID-AGA   1 kltkkdlnkvflrslflqasfnyermqalgflysmlpalkklYkkdkedlkealkrhleffNtepqlatfilGitlalEeekang.eideeainavKvg 98 
                 klt++d++ vf+rs ++q+s+n+ermqalgf++sm+pa+++lY+++++ +k+a+krhleffNt+p++a+++lG+tla+Ee++ang eid+ ain++Kvg
  CTQ28768.1  12 KLTQSDIRGVFIRSNLFQGSWNFERMQALGFCFSMVPAIRRLYPENNDARKQAIKRHLEFFNTHPYVAAPVLGVTLAMEEQRANGaEIDDGAINGIKVG 110
                 79*****************************************99****************************************78************ PP

    EIID-AGA  99 lmGPlAGiGDslfwgtlrpilaaiaaslAlqgnilGpilflvvfnvvrlalryyllelGYklGtkaieklsesgllqkltkaasilGlfvvGaliaswv 197
                 lmGPlAG+GD++fwgt+rp++aa++a++A++g++lGp+lf+++fn+vrl++ryy++ +GY++G ++++++  +g lqklt++asilGlfv+Gal+++w+
  CTQ28768.1 111 LMGPLAGVGDPIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNAVRLLTRYYGVAYGYRKGVDIVKDMG-GGFLQKLTEGASILGLFVMGALVNKWT 208
                 **********************************************************************9.779************************ PP

    EIID-AGA 198 kistplkissget......tvslqdildkilpgllpllltllvywllkkkkvspikiilllvvigivgsllgil 265
                 ++++p+++s+ +       ++++q+ild+++pgl+plllt+ ++wll+kk v+p++ii++++vigi+g+++g+l
  CTQ28768.1 209 HVNIPMVVSKITGsdgqvhVTTVQTILDQLMPGLVPLLLTFACMWLLRKK-VNPLWIIVGFFVIGIAGYAVGLL 281
                 ******99866667777778******************************.********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2267.80
//
Query:       CTQ28769.1  [L=152]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-59  199.1   5.4    4.2e-59  198.9   5.4    1.0  1  DUF986    Protein of unknown function (DUF986)


Domain annotation for each model (and alignments):
>> DUF986  Protein of unknown function (DUF986)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.9   5.4   2.3e-63   4.2e-59       1     147 [.       4     150 ..       4     151 .. 0.99

  Alignments for each domain:
  == domain 1  score: 198.9 bits;  conditional E-value: 2.3e-63
      DUF986   1 tdiilillivllllyaiydefildklkgktkLkvkLkrrkkidalilivliviliyqnvteegesltlyLLavlillaiYlafiRspklllKeeGffya 99 
                 td+++il+i++ l+yaiyd+fi+++++g   L+++L rr+++d++i+++l +iliy+n+t++g+++t++LL +l+l+ +Yl++iR+pk+++K + ff+a
  CTQ28769.1   4 TDLVIILFILAQLAYAIYDQFIMPRRNGPVLLAIPLLRRSRVDGMIFVGLTAILIYNNITQHGTAITTWLLSALALMGLYLFWIRTPKIIFKPRAFFFA 102
                 799************************************************************************************************ PP

      DUF986 100 nifieYkkikainlsedgilvidlekrrllikvkklddlekivkflve 147
                 n++ieY++ik++nlsedg+lv++le+rrlli+v+++ddleki+k+l++
  CTQ28769.1 103 NVWIEYQRIKEMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLIT 150
                 *********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1177.56
//
Query:       CTQ28770.1  [L=188]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-53  179.9  17.2      6e-53  178.7  10.8    2.0  2  Mntp      Putative manganese efflux pump
  ------ inclusion threshold ------
       0.27   10.6   4.2       0.37   10.2   4.2    1.2  1  DUF373    Domain of unknown function (DUF373)
        4.3    7.0   0.0        4.3    7.0   0.0    3.8  4  DUF3918   Protein of unknown function (DUF3918)


Domain annotation for each model (and alignments):
>> Mntp  Putative manganese efflux pump
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.4     0.002        12      75      94 ..       3      22 ..       1      29 [. 0.82
   2 !  178.7  10.8     1e-56     6e-53       2     152 .]      31     182 ..      30     182 .. 0.97

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.002
        Mntp 75 lksllllaiatSiDAlavGl 94
                l +++lla++ S+DA+a+ +
  CTQ28770.1  3 LSATILLAFGMSMDAFAASI 22
                567899**********9755 PP

  == domain 2  score: 178.7 bits;  conditional E-value: 1e-56
        Mntp   2 vklkealkialifGlfqalmpliGwllGkllselieavdhwiafllLlllGlkmivealkeeeeekkek.eelslksllllaiatSiDAlavGlsLall 99 
                 +k++ea++++lifG +++l+pl+Gw lG+l+s++i +++hwiaf+lL++lG++mive+++ +++e+ e+ +++ ++ l+++a+atS+DA+avG++La+l
  CTQ28770.1  31 PKFSEAVRTGLIFGAIETLTPLVGWGLGMLASQFILEWNHWIAFILLVFLGGRMIVEGFRGDSDEACEApHRHGFWLLVTTAFATSLDAMAVGVGLAFL 129
                 67899*******************************************************99999888768888************************* PP

        Mntp 100 kvnillavlliGlvtlvlsllGlllGrklgsllgkkaeilGGliLiliGlkil 152
                 +v+i++++l+iG++t+++s+lG+++Gr +g llgk+aeilGG++Li+iG +il
  CTQ28770.1 130 QVSIVTTALAIGCATFIMSTLGMMVGRFIGPLLGKRAEILGGIVLIGIGSEIL 182
                 **************************************************998 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.2   6.2e-05      0.37     160     280 ..      52     164 ..      44     177 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.2e-05
      DUF373 160 plGlllliyalllllglpelalaiillllGlylllrGfgldelleelleklkesleegritfvtyvvalll..lligiisgyislesvssasvssgllt 256
                 ++G+ l ++a   +l+   +++ i+l++lG+ ++++Gf+ d+      e  +   + g   +vt+  a+ l  +++g+  ++ +++ v     ++ l +
  CTQ28770.1  52 LVGWGLGMLASQFILEWNHWIAFILLVFLGGRMIVEGFRGDS-----DEACEAPHRHGFWLLVTTAFATSLdaMAVGVGLAFLQVSIV-----TTALAI 140
                 5788888888888899999********************998.....46788888999999999999999944555555554443333.....446677 PP

      DUF373 257 lilafiygavewlalailtaslgk 280
                   ++fi++++ +++  ++  +lgk
  CTQ28770.1 141 GCATFIMSTLGMMVGRFIGPLLGK 164
                 777788888888877777666665 PP

>> DUF3918  Protein of unknown function (DUF3918)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   1.0     0.098   5.8e+02       1      18 [.       1      18 [.       1      21 [. 0.80
   2 ?    7.0   0.0   0.00072       4.3       4      21 ..      48      65 ..      47      69 .. 0.87
   3 ?   -1.3   0.1       0.3   1.8e+03       8      17 ..     119     128 ..     115     131 .. 0.77
   4 ?    0.3   0.3     0.094   5.6e+02       4      13 ..     133     142 ..     132     156 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.098
     DUF3918  1 MNrlmtSllalGaGaaay 18
                MN   t lla+G  + a+
  CTQ28770.1  1 MNLSATILLAFGMSMDAF 18
                777778899999988776 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00072
     DUF3918  4 lmtSllalGaGaaayqma 21
                + t l++ G+G++a q++
  CTQ28770.1 48 TLTPLVGWGLGMLASQFI 65
                567899**********97 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.3
     DUF3918   8 llalGaGaaa 17 
                 ++a G+G a 
  CTQ28770.1 119 AMAVGVGLAF 128
                 5789999886 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.094
     DUF3918   4 lmtSllalGa 13 
                 ++t++la+G 
  CTQ28770.1 133 IVTTALAIGC 142
                 6799999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1457.75
//
Query:       CTQ28771.1  [L=264]
Description: 23S rRNA m1G745 methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-15   56.2   0.0    1.3e-14   54.6   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
    3.4e-14   53.3   0.0    7.8e-14   52.2   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    5.3e-12   45.8   0.0    8.6e-12   45.1   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    2.1e-06   28.4   0.0    4.7e-06   27.3   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
    7.9e-06   25.8   0.0    1.9e-05   24.5   0.0    1.6  1  Methyltransf_23  Methyltransferase domain
    9.9e-05   21.8   0.0    0.00018   20.9   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0037   17.2   0.0     0.0057   16.7   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
     0.0049   16.5   0.0      0.007   16.0   0.0    1.2  1  NodS             Nodulation protein S (NodS)
  ------ inclusion threshold ------
      0.036   12.6   0.0      0.048   12.2   0.0    1.3  1  Methyltransf_29  Putative S-adenosyl-L-methionine-dependent m
       0.04   12.9   0.0      0.058   12.4   0.0    1.2  1  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
      0.045   14.1   0.0      0.095   13.0   0.0    1.5  1  AdoMet_MTase     Predicted AdoMet-dependent methyltransferase
      0.052   13.1   0.0      0.083   12.4   0.0    1.2  1  MTS              Methyltransferase small domain
      0.057   13.0   0.0      0.084   12.5   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW
       0.12   11.6   0.0       0.18   11.1   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
       0.13   11.3   0.0       0.28   10.2   0.0    1.5  1  Pox_MCEL         mRNA capping enzyme
       0.16   11.5   0.0        0.3   10.6   0.0    1.4  1  DLH              Dienelactone hydrolase family
       0.25   10.7   0.0       0.38   10.1   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   1.2e-17   1.3e-14       1      95 [.      87     170 ..      87     171 .. 0.94

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 1.2e-17
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGll 94 
                      Ld+GcG G+++ a+a  ++r  g+D+sk ++++a +++++     +f va+ ++lpf d+sfD+vv   + ++ e       e+aRv++pgG++
       CTQ28771.1  87 LDIGCGEGYYTHAFAAIASRSWGLDVSKPAIRAAAKRYPQV----NFCVASSQRLPFSDASFDAVVRIYAPCNAE-------ELARVVRPGGWV 169
                      8**************999*************9999999885....58**********************999996.......999*******98 PP

                      E CS
  Methyltransf_11  95 v 95 
                      +
       CTQ28771.1 170 I 170
                      7 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   7.4e-17   7.8e-14       2      97 .]      87     167 ..      86     167 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 7.4e-17
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkp 95 
                      Ld+GcG+G +t a+a+    ++ +g+D+s+ +++aa++r+    ++v+f +++ ++lpf d+sfD+vv ++a    +        +e+arv++p
       CTQ28771.1  87 LDIGCGEGYYTHAFAAIA--SRSWGLDVSKPAIRAAAKRY----PQVNFCVASSQRLPFSDASFDAVVRIYA----P-----CNAEELARVVRP 165
                      9**************985..9*******************....9************************855....2.....225799999999 PP

                      EE CS
  Methyltransf_25  96 gG 97 
                      gG
       CTQ28771.1 166 GG 167
                      98 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   8.1e-15   8.6e-12       6     129 ..      85     193 ..      82     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 8.1e-15
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeier 99 
                       +lD+GCG+G++t+++a  +   ++  G+D s+ ai+ A ++     +  v+F++++ + l+  ++d++fD ++       +++p+++ ee+ r
       CTQ28771.1  85 DLLDIGCGEGYYTHAFA-AI--ASRSWGLDVSKPAIRAAAKR-----YPQVNFCVASSQRLP--FSDASFDAVVR------IYAPCNA-EELAR 161
                      68***************.43..46789**************8.....899************..*********99......7888877.5669* PP

  Methyltransf_31 100 vlkpggilliedpr..llaelpakveeeskay 129
                      v++pgg +++++p   +l el++ +++e ++ 
       CTQ28771.1 162 VVRPGGWVITATPGprHLLELKGLIYDEVRLH 193
                      ***********998777777777777766643 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   4.5e-09   4.7e-06       1      75 [.      87     152 ..      87     169 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 4.5e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnv 75 
                      L+iGcG G +++a+++    ++  g+D+s+ ai +a+++  + +   ++  +l   d       +sfD+vv + +
       CTQ28771.1  87 LDIGCGEGYYTHAFAAI--ASRSWGLDVSKPAIRAAAKRYPQVNFCVASSQRLPFSD-------ASFDAVVRIYA 152
                      8*************999..**************888888888776443333333333.......39999997665 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.8e-08   1.9e-05       7     125 ..      68     187 ..      55     227 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.8e-08
  Methyltransf_23   7 eelsdklerllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdpp 99 
                      + l+d++++ l +  a+  +LdiGcG+G+ +  +++      g D s  a+  a+   ++ ++  + +q  ++++++fd +v ++  ++ +   
       CTQ28771.1  68 RPLRDAIAERL-RHYAPTDLLDIGCGEGYYTHAFAAIASRSWGLDVSKPAIRAAAkRYPQVNFCVASSQRLPFSDASFDAVVRIYAPCNAEE-- 158
                      55667776555.377889*******************************999997333444444455556677888********99998777.. PP

  Methyltransf_23 100 ellrqiatllkpgGylllseplasl........k 125
                           +a+ ++pgG+++  +p+ ++        +
       CTQ28771.1 159 -----LARVVRPGGWVITATPGPRHllelkgliY 187
                      .....66677799999888888776555555542 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.7e-07   0.00018      31     149 ..      66     169 ..      53     177 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.7e-07
                      THHHHHHHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES CS
  Ubie_methyltran  31 ihrlWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsf 124
                       +r  ++ + ++  +  ++++lD+ +G g ++ +++  + ++    +lD+++  ++ + k+     + +++f +a++++Lpf+d sfD v   +
       CTQ28771.1  66 HYRPLRDAIAERLRHYAPTDLLDIGCGEGYYTHAFAAIASRS---WGLDVSKPAIRAAAKR-----YPQVNFCVASSQRLPFSDASFDAVVRIY 151
                      5566788888888999999****************9988877...5789999988877776.....679********************98777 PP

                      -GGG-S-HHHHHHHHHHHEEEEEEE CS
  Ubie_methyltran 125 GlrnvtDklkaLkeayrvlkpGGrl 149
                         n        +e+ rv++pGG +
       CTQ28771.1 152 APCNA-------EELARVVRPGGWV 169
                      65554.......5667777777766 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.4e-06    0.0057      17      75 ..      74     128 ..      66     161 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.4e-06
  Methyltransf_32  17 lkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklg 75 
                      ++e  +++++++++D+G+G+gY + + a        +  g+d+++  +++a kr  +++
       CTQ28771.1  74 IAERLRHYAPTDLLDIGCGEGYYTHAFAA----IASRSWGLDVSKPAIRAAAKRYPQVN 128
                      4445688999******************9....7899*********9999999987776 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.7e-06     0.007      43     111 ..      82     148 ..      61     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.7e-06
        NodS  43 siadalevGcaaGalterlapyckrltvvdvveeaiararervkesshiswivsdvqqfs.tdekfdliv 111
                   +d l++Gc  G +t  +a ++ r   +dv + ai  a +r     ++++ v+  q++  +d+ fd +v
  CTQ28771.1  82 APTDLLDIGCGEGYYTHAFAAIASRSWGLDVSKPAIRAAAKRYP---QVNFCVASSQRLPfSDASFDAVV 148
                 45799*******************************99998865...59999999999863578899887 PP

>> Methyltransf_29  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.5e-05     0.048     120     220 ..      85     174 ..       9     193 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.5e-05
  Methyltransf_29 120 tvlDvGCgvasfgayllsrdvltlslapkDeheaqvqfaLeRgvpailavlgtkrlpyPsrsfdlihCsrCridwteedgilllevdRvlRpgG 213
                        lD+GCg   ++ ++    + + s +  D+ +  +  a  R       v +++rlp+  +sfd +   r   +          e+ Rv+RpgG
       CTQ28771.1  85 DLLDIGCGEGYYTHAFA--AIASRSWGL-DVSKPAIRAAAKRYPQVNFCVASSQRLPFSDASFDAVV--RIYAPC------NAEELARVVRPGG 167
                      579*****999988875..577777765.999999*******999999****************873..443333......34599******** PP

  Methyltransf_29 214 yfvlsap 220
                      + + ++p
       CTQ28771.1 168 WVITATP 174
                      8777655 PP

>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.5e-05     0.058     202     241 ..      83     122 ..      73     133 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.5e-05
  tRNA_U5-meth_tr 202 kgdllelycGnGnfslalarnfekvlateiakssveaaqy 241
                        dll++ cG+G ++ a+a   ++    +++k+++ aa +
       CTQ28771.1  83 PTDLLDIGCGEGYYTHAFAAIASRSWGLDVSKPAIRAAAK 122
                      57*********************************99975 PP

>> AdoMet_MTase  Predicted AdoMet-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     9e-05     0.095      59      93 ..      83     117 ..      73     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9e-05
  AdoMet_MTase  59 etsfvdvgcgngllvyvlaaegykgygidlrkrkl 93 
                   +t + d+gcg+g   + +aa   + +g+d+ k  +
    CTQ28771.1  83 PTDLLDIGCGEGYYTHAFAAIASRSWGLDVSKPAI 117
                   57789*************************99544 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.9e-05     0.083      25     101 ..      76     147 ..      70     150 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.9e-05
                 HHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEE CS
         MTS  25 etlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdli 101
                 e l + +  ++lD+GcG G+ + a+a+  ++     +dv++ A+++a + + + ++   +vas+    +++++fd++
  CTQ28771.1  76 ERLRHYAPTDLLDIGCGEGYYTHAFAAIASR--SWGLDVSKPAIRAAAKRYPQVNF---CVASSQRLPFSDASFDAV 147
                 55666666789*************9998888..6899*******999887766665...445555555555666666 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.9e-05     0.084      16      80 ..      85     148 ..      72     180 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.9e-05
        MetW  16 rvldlGcGdGellellkeekqvdgrGleldeegvaecvakGlsviqgdldkdlenfedksfdyvv 80 
                  +ld+GcG+G   + ++     ++ Gl++++ ++ ++ ++  +v    + ++   f+d sfd vv
  CTQ28771.1  85 DLLDIGCGEGYYTHAFAA-IASRSWGLDVSKPAIRAAAKRYPQVNFCVASSQRLPFSDASFDAVV 148
                 68**********999966.777999**********************9999999********998 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00017      0.18      52     109 ..      72     128 ..      54     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
                 HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS- CS
        CMAS  52 dlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeld 109
                 d i e+l+  +   lLdiGcG G+ ++  ++    +  gl +Sk   + a kr  +++
  CTQ28771.1  72 DAIAERLRHYAPTDLLDIGCGEGYYTHAFAAI-ASRSWGLDVSKPAIRAAAKRYPQVN 128
                 66778888888899*********987766555.8899999999999888888876665 PP

>> Pox_MCEL  mRNA capping enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00027      0.28      64     139 ..      82     163 ..      73     173 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00027
    Pox_MCEL  64 nklkvLdldcgkGgDLeKyekgeIsklvatDiaeesieeckeRY.......nklrsekkskyykFda.elirsdsfvssvrevf 139
                     +Ld++cg+G   +  +++  s+  + D+++ +i+ + +RY        + ++   s    Fda   i + +  +++  v+
  CTQ28771.1  82 APTDLLDIGCGEGYYTH-AFAAIASRSWGLDVSKPAIRAAAKRYpqvnfcvASSQRLPFS-DASFDAvVRIYAPCNAEELARVV 163
                 56789*******97544.4444557789****************7775433222222222.35677766677777777777666 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00029       0.3      36      73 ..      29      65 ..      23      85 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00029
         DLH 36 laeeGYvalaPdlYarqaldpndeaeaaraldelvskv 73
                la+eGYv l+P  ++r   dp+d ae ++a +   ++ 
  CTQ28771.1 29 LAKEGYVNLLPVQFKRSR-DPGDSAEMMQARRAFLDAG 65
                9*****************.********99987766655 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00036      0.38     163     211 ..      84     132 ..      73     172 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
        PrmA 163 eevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNa.elNkvea 211
                 + +lD+G+G G  + a a + a++  ++D+ + A+++a++   ++N + a
  CTQ28771.1  84 TDLLDIGCGEGYYTHAFAAI-ASRSWGLDVSKPAIRAAAKRYpQVNFCVA 132
                 5789*********9998888.67789**********98764314444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2003.16
//
Query:       CTQ28772.1  [L=581]
Description: transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-74  250.7   0.0    2.3e-74  250.4   0.0    1.1  1  Transpeptidase  Penicillin binding protein transpeptidase dom
    3.1e-18   66.8   0.0    1.2e-16   61.6   0.0    2.4  1  PBP_dimer       Penicillin-binding Protein dimerisation domai


Domain annotation for each model (and alignments):
>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.4   0.0   2.6e-78   2.3e-74       1     305 [.     253     547 ..     253     548 .. 0.94

  Alignments for each domain:
  == domain 1  score: 250.4 bits;  conditional E-value: 2.6e-78
                     EEEEEEETTT-BEEEEEEESE-TTTHHCC.TCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS.ECTCCCC-SSSSE CS
  Transpeptidase   1 gaavvldaktgevlamaskpsydpnakvg.kneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqsikdweqdnkgseg 94 
                     gaav++   tge+lamas p+++pn++ +   ++++nra+++++ePGSt+K++++++al++g+++pd+++d+ ++   g  +i+d         +
      CTQ28772.1 253 GAAVLIKIDTGEILAMASYPDFNPNNRDSaTLDDFRNRAISDTFEPGSTVKPLVIMTALQQGIVQPDSVVDTHPFVLDG-HRIRDVGYYP----E 342
                     79***************************98999*****************************************9765.3366666654....6 PP

                     EEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--.B--S.SH..HHHHHHHHTTTSBB-HHHHHHHHHHHHTTTEEE-- CS
  Transpeptidase  95 itlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaG.vptr.kw..legatisfgiGltvtplqlaqayaaiangGklvkP 185
                     ++l+ +l+kSs+t++++l+ +++ ++l +++k+fg+G++tg++l gesaG +p r +w  l++at++fg+Gl vtplqla++ya+i   G+ +++
      CTQ28772.1 343 LSLTGILQKSSDTGVSHLSLAMPVQHLIDTYKAFGFGEPTGLGLTGESAGlMPHRrYWgqLDRATFAFGYGLMVTPLQLAHVYATIGGFGIARPL 437
                     6*************************************************77777677************************************* PP

                     BSEEEEEECTTEEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCTTTTGCGTCTTS--EEEEEEEEECSSSTTSEEEEEEEEEEEEEESTTS-SEE CS
  Transpeptidase 186 hlvkaivdpdgvrkvkpkelnklpisketaekvkeglkgvvsrgsgtataavegykvagKTGTAevagkkgngkkegakiswfvgyapadnpkya 280
                     +++          +++p++++ +++ ++ +++v++++++v+  g g ++aav  y+va KTGTA+++g++g+    +++++  +g+apa+ p++a
      CTQ28772.1 438 SIT----------RIDPPVMGTRVMPESIVHSVEHMMESVALPGGGGTKAAVRDYRVAVKTGTAKKIGPDGKY--IDKYVAYTAGVAPASRPQFA 520
                     ***..........9******************************888888******************88665..55689*************** PP

                     EEEEECTCS..SSSSCCHHHHHHHHHH CS
  Transpeptidase 281 vavlieqpk..eaaggkaaapiakkil 305
                     ++v++++p   +++gg+++ap++ +i+
      CTQ28772.1 521 LVVVMNDPSngSYYGGAVSAPVFSQIM 547
                     **************************9 PP

>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   1.3e-20   1.2e-16       4     179 ..      62     214 ..      59     215 .. 0.90

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 1.3e-20
                 E----EE-TTS-EEEEEEEEEEEEEEESSS-HHHHHHH...HHHHHHHCHHHTTS-HHHHHHHHCCCCTSSTTSCECCCCCEECHHHCCCHHHHHCSTT CS
   PBP_dimer   4 apRGeIyDrngrlLAtnrpsytltitpsklkkkkalek...ikklaklleseenldderleelalkknsykaykpvviaediseeevarikenakdlpG 99 
                  +RG I Dr+gr+LA ++p+ ++ i+p+ + +k         + +a+ l+    l+   l ela++ +s     +  +a++i+ e+++ i + +  lpG
  CTQ28772.1  62 VERGMISDREGRPLAVSVPVSAIWIDPQTTMEKGGVGYgprWQAMAEALH----LN---LGELAQRVQSHPHARFLYLARQINPEQAEWIDKLH--LPG 151
                 78**************************9999987766778888888886....44...4445559999*********************9877..99* PP

                 -EEEEEEEEEETTTSTTHHHH-EEEEC-HHHHHCCCCHTCCTTCEEEESHHHHHTHHHHHECCCEEEEEEECTSSCCEEE CS
   PBP_dimer 100 inievepkRyYpkgelaahvlGyvgkiteeelekykekgyssgdliGksGlEkqyEeeLrGkkGkrqvkvdarGrileel 179
                 ++ ++e++R Yp g +aa++lG ++                   + G +G+Ek+++++L Gk G r v++d++G+++e++
  CTQ28772.1 152 VYLRDESRRFYPAGHVAANLLGFTNVD-----------------NQGIEGVEKSFNAQLTGKPGRRLVRKDKHGNVIENI 214
                 **********************88765.................89*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 4097.20
//
Query:       CTQ28773.1  [L=69]
Description: stress protein, member of the CspA-family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-33  113.5   1.6    3.2e-33  113.4   1.6    1.0  1  CSD       'Cold-shock' DNA-binding domain
     0.0012   18.5   0.4     0.0015   18.1   0.4    1.4  1  OB_RNB    Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   1.6   3.6e-37   3.2e-33       2      65 ..       5      68 ..       4      69 .] 0.98

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 3.6e-37
                EEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEEE CS
         CSD  2 tGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVtk 65
                +G+Vkwfn++kgfGFIt++dg+kdvFvH+saiqg+gf++L+egq+VeFe+++g+kgp A+nVt 
  CTQ28773.1  5 KGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTA 68
                7*************************************************************96 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.4   1.7e-07    0.0015       7      29 ..      14      36 ..      12      60 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.7e-07
                SSS-EEEEECT.TEEEEE-HHHH CS
      OB_RNB  7 kkGFGFlipdegkeDifippeqm 29
                +kGFGF+ p +g++D+f++ + +
  CTQ28773.1 14 SKGFGFITPADGSKDVFVHFSAI 36
                79****************97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 567.33
//
Query:       CTQ28774.1  [L=47]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 368.83
//
Query:       CTQ28775.1  [L=34]
Description: Cold shock-like protein cspC (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       172  (0.0095934); expected 358.6 (0.02)
Passed bias filter:                      120  (0.00669307); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 267.33
//
Query:       CTQ28776.1  [L=48]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 388.68
//
Query:       CTQ28777.1  [L=96]
Description: hypothetical protein CH1034_240274 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-34  115.8   1.2      8e-34  115.6   1.2    1.0  1  YebO      YebO-like protein
     0.0082   16.4   0.9       0.01   16.1   0.9    1.1  1  DUF4381   Domain of unknown function (DUF4381)
     0.0089   16.2   0.1      0.012   15.8   0.1    1.1  1  OSTbeta   Organic solute transporter subunit beta protein
  ------ inclusion threshold ------
      0.011   15.7   2.5      0.013   15.4   2.5    1.1  1  CHASE3    CHASE3 domain
      0.018   15.8   0.6      0.025   15.4   0.6    1.2  1  RTTN_N    Rotatin, an armadillo repeat protein, centriole fun


Domain annotation for each model (and alignments):
>> YebO  YebO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   1.2   2.2e-37     8e-34       2      80 .]      17      96 .]      16      96 .] 0.96

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 2.2e-37
        YebO  2 vlvivvlvgllvwFFvnRasvrAneqieLleelleqqkrQnaLLrrLaeakkeqsedveeksdaveesd.edfkrlipEr 80
                v+v ++lvgll+wFFvnRas+rAneqieLl++ll+qqkrQnaLLrrL+ea+++++edv+e++ a + +  ++f+rl++Er
  CTQ28777.1 17 VSVALLLVGLLLWFFVNRASSRANEQIELLQALLDQQKRQNALLRRLCEANAPEKEDVAEPTVASKAKGeDEFIRLVAER 96
                8999***********************************************************999999667*******9 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.9   2.8e-06      0.01      25      87 ..      13      71 ..       4      80 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.8e-06
     DUF4381 25 laalll..llllvlalwllr.rrkrnrreAlreLaalradeadakellaalselLkrvalayypre 87
                + +++   lll++l+lw +  r   +  e +++L+al        ++ ++ ++lL+r++ a  p++
  CTQ28777.1 13 ASLAVSvaLLLVGLLLWFFVnRASSRANEQIELLQALL-------DQQKRQNALLRRLCEANAPEK 71
                43333322444444444444233333566777777777.......666778999999998888855 PP

>> OSTbeta  Organic solute transporter subunit beta protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   3.2e-06     0.012      36     113 ..       7      84 ..       5      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.2e-06
     OSTbeta  36 ysiLvLsavvvvisvvLLarsiqanRnrKiqpqeketpealyleeakakennslnilretllsekpklaevevelkdr 113
                   iL L+ ++v ++++L +  +    nr   + +++    + l +++ ++n  l++l e + +ek+++ae +v  k +
  CTQ28777.1   7 PGILNLASLAVSVALLLVGLLLWFFVNRASSRANEQIELLQALLDQQKRQNALLRRLCEANAPEKEDVAEPTVASKAK 84 
                 569999999999999999988888888888877888888888999999*********************998887766 PP

>> CHASE3  CHASE3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   2.5   3.7e-06     0.013      45     106 ..      33      94 ..      32      96 .] 0.87

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.7e-06
      CHASE3  45 eqaraeiqealeelreltadnpeqqerldrl.ealieqklaeleetialrreggleaalalvr 106
                 ++a ++ +e++e l++l+ ++++q++ l rl ea++ +k +++e+t+a++   g ++   lv+
  CTQ28777.1  33 NRASSRANEQIELLQALLDQQKRQNALLRRLcEANAPEKEDVAEPTVASKAK-GEDEFIRLVA 94 
                 68999*************************9456666777**********98.8888888876 PP

>> RTTN_N  Rotatin, an armadillo repeat protein, centriole functioning
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.6   6.9e-06     0.025      15      65 ..       6      58 ..       2      68 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.9e-06
      RTTN_N 15 ehgllseedl.vkekellkkLlewFnfepvp.eeeevLaLllkllkspsaael 65
                + g+l  + l v+   ll+ Ll wF ++ ++ +++e ++Ll+ ll +++ ++ 
  CTQ28777.1  6 NPGILNLASLaVSVALLLVGLLLWFFVNRASsRANEQIELLQALLDQQKRQNA 58
                56777888898889999********999998899*********8887765543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1315  (0.0733449); expected 358.6 (0.02)
Passed bias filter:                      868  (0.0484132); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 811.40
//
Query:       CTQ28778.1  [L=78]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.024   14.2   0.0      0.024   14.2   0.0    1.1  1  VirArc_Nuclease  Viral/Archaeal nuclease


Domain annotation for each model (and alignments):
>> VirArc_Nuclease  Viral/Archaeal nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.4e-06     0.024     120     161 ..      30      71 ..      12      78 .] 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-06
  VirArc_Nuclease 120 vevakelevlGrtifihyadredklklisalrilnlekqgki 161
                       e++++ +vl r  fi+ a++ +kl +++a  ++ l  q+++
       CTQ28778.1  30 KEISRQKNVLPRNKFINSANAAEKLNILVAHYVKHLSPQQQA 71 
                      578999******************************988874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 691.26
//
Query:       CTQ28779.1  [L=79]
Description: hypothetical protein CH1034_240276 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-38  128.8   2.4    6.5e-38  128.6   2.4    1.0  1  YobH      YobH-like protein


Domain annotation for each model (and alignments):
>> YobH  YobH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   2.4   3.6e-42   6.5e-38       1      70 []       2      71 ..       2      71 .. 0.99

  Alignments for each domain:
  == domain 1  score: 128.6 bits;  conditional E-value: 3.6e-42
        YobH  1 rllirivillaviwvalLlsGyGvligskenaaGlGLqCqyltargvvtaqylhtdsGviGvtdCPllkk 70
                rl+ir++il+a++w+++LlsGyGvl++s+en++GlGL+Cqyltargv+ta y+h+dsGviGv++CPll+k
  CTQ28779.1  2 RLIIRTIILVAILWIGVLLSGYGVLFHSEENVGGLGLKCQYLTARGVSTALYVHSDSGVIGVSSCPLLRK 71
                79*******************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 615.38
//
Query:       CTQ28780.1  [L=263]
Description: DNA-binding transcriptional repressor KdgR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-49  165.0   0.1    4.8e-47  159.0   0.0    2.5  3  IclR            Bacterial transcriptional regulator
    4.6e-14   51.9   0.4    1.9e-13   50.0   0.0    2.1  2  HTH_IclR        IclR helix-turn-helix domain
    1.7e-05   24.3   0.0    6.7e-05   22.4   0.0    1.9  2  HTH_24          Winged helix-turn-helix DNA-binding
    0.00019   21.2   0.1    0.00071   19.4   0.1    2.0  1  TrmB            Sugar-specific transcriptional regulator TrmB
    0.00052   19.8   0.0     0.0013   18.6   0.0    1.7  1  HTH_5           Bacterial regulatory protein, arsR family
    0.00074   19.4   0.1     0.0026   17.7   0.0    1.9  2  HTH_11          HTH domain
     0.0028   17.8   0.2       0.01   16.0   0.2    2.0  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0036   17.7   0.6       0.53   10.7   0.1    2.4  2  HTH_26          Cro/C1-type HTH DNA-binding domain
     0.0042   17.0   0.1      0.011   15.6   0.0    1.7  2  MarR_2          MarR family
     0.0057   17.0   0.1      0.017   15.4   0.1    1.9  1  Rrf2            Transcriptional regulator
      0.006   17.2   0.3      0.017   15.7   0.1    1.8  2  Mga             Mga helix-turn-helix domain
     0.0061   16.5   0.0      0.014   15.3   0.0    1.5  1  MarR            MarR family
     0.0085   16.1   0.1      0.023   14.7   0.0    1.8  1  HTH_45          Winged helix-turn-helix
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.021   15.0   0.0    1.5  1  FUR             Ferric uptake regulator family
      0.026   14.6   0.1       0.13   12.3   0.0    2.2  3  HTH_20          Helix-turn-helix domain
       0.03   14.3   0.1      0.085   12.9   0.0    1.7  2  HTH_6           Helix-turn-helix domain, rpiR family
      0.047   13.7   0.1       0.18   11.8   0.0    1.9  2  Dimerisation2   Dimerisation domain
      0.055   13.3   0.0       0.27   11.1   0.0    2.0  2  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.062   13.3   0.1       0.15   12.1   0.1    1.6  1  PadR            Transcriptional regulator PadR-like family


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.083        78      40      78 ..      32      70 ..      22      74 .. 0.88
   2 ?   -1.9   0.0       2.9   2.8e+03      37      51 ..      95     109 ..      87     116 .. 0.78
   3 !  159.0   0.0   5.1e-50   4.8e-47       2     128 ..     129     254 ..     128     255 .. 0.98

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.083
                HT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTT CS
        IclR 40 lelkrlterTitdpeeLleeLakvReqGyavdreEeeeg 78
                 ++++l++r + ++ +  + L++++  Gy  +++E+e++
  CTQ28780.1 32 IGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGESEKY 70
                5688999999*************************9975 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.9
                 HHHHT---SSTTS-- CS
        IclR  37 lerlelkrlterTit 51 
                 ++ +el rlt++Ti 
  CTQ28780.1  95 IQMRELSRLTKETIH 109
                 667899999999996 PP

  == domain 3  score: 159.0 bits;  conditional E-value: 5.1e-50
                 SEEETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEE CS
        IclR   2 rlravsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvs 100
                 +lr++s+iG+r ply+taiGK+lLa+ d+ e+e++l  +e+kr terTit++eeLl+ L+ vReqGy  d+eE+eeg+rci++p+fd++g v+a++s+s
  CTQ28780.1 129 NLRMYSRIGRRNPLYSTAIGKVLLAWRDRSEVEQILDGVEYKRSTERTITSTEELLKVLDGVREQGYGEDNEEQEEGLRCIGVPVFDRFGVVIAGLSIS 227
                 689************************************************************************************************ PP

                 EETTTSHHHHHHHHHHHHHHHHHHHHHH CS
        IclR 101 gptarlteeelkeellalvreaArkisr 128
                 +pt r++ee+l+e ++a++++aArkis+
  CTQ28780.1 228 FPTLRFSEERLHE-YVAMLHQAARKISE 254
                 *************.************97 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0     2e-16   1.9e-13       1      52 []      15      65 ..      15      65 .. 0.96
   2 ?   -0.6   0.1       1.2   1.2e+03       9      48 ..      74     113 ..      74     117 .. 0.65

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 2e-16
                HHHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE... CS
    HTH_IclR  1 sldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqdg 52
                s+ + + iL+al+e+++  +++el++r  ++kStv+R+Lqt+  lGyv q+g
  CTQ28780.1 15 SVLKVFGILQALGEERE-IGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEG 65
                7899*************.8******************************985 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.2
                 HCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR   9 LdalaeapqeltlselArrtglpkStvhRlLqtLvelGyv 48 
                 L++++ ++++l + +l r +++     +Rl++  ++lG +
  CTQ28780.1  74 LKLFELGARALQNVDLVRSADIQMRELSRLTKETIHLGAL 113
                 5666777777777777777777666666666666666666 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     7e-08   6.7e-05       6      47 ..      20      61 ..      18      62 .. 0.96
   2 ?   -1.4   0.0       1.9   1.8e+03      16      26 ..      93     103 ..      89     105 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 7e-08
      HTH_24  6 rkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                + IL++L ++  i ++eL++r+ +S+stv r l+ +++ G++
  CTQ28780.1 20 FGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKSLGYV 61
                67***************************************8 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.9
      HTH_24  16 prisqreLAer 26 
                 ++i +reL++ 
  CTQ28780.1  93 ADIQMRELSRL 103
                 78999***985 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   7.5e-07   0.00071      15      58 ..      24      67 ..      20      76 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.5e-07
                HHHHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 15 laLlklgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                +aL ++ +  ++e+++++  ++s+vY+ L+ +++ G+V  e ++
  CTQ28780.1 24 QALGEEREIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGES 67
                566678888899**************************998554 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.3e-06    0.0013       7      45 ..      22      61 ..      18      63 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.3e-06
                HHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  7 ILklLae.gelcvcelaeelglsqstvShHLkkLreaGLV 45
                IL++L e +e  ++el+  + +s+stv + L  ++ +G+V
  CTQ28780.1 22 ILQALGEeREIGITELSQRVMMSKSTVYRFLQTMKSLGYV 61
                99999998999****************************9 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.8e-06    0.0026       5      44 ..      22      60 ..      18      67 .. 0.90
   2 ?   -1.8   0.0       3.4   3.2e+03      40      54 ..     181     195 ..     174     196 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.8e-06
      HTH_11  5 ilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgv 44
                il+ L e+r+ i + eL+++  +S++tv+r ++++++lg+
  CTQ28780.1 22 ILQALGEERE-IGITELSQRVMMSKSTVYRFLQTMKSLGY 60
                8999977777.***************************95 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.4
      HTH_11  40 eelgvpIesepgrGY 54 
                 eel+  +++++ +GY
  CTQ28780.1 181 EELLKVLDGVREQGY 195
                 677788899999999 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   1.1e-05      0.01      13      56 ..      22      65 ..      11      68 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-05
                    HHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
  Fe_dep_repress 13 IYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyveyek 56
                    I+++ +e+  ++ ++l++r   s+s+V   l+ +++ Gyv  e+
      CTQ28780.1 22 ILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEG 65
                    788888999999****************************8775 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   0.00057      0.53       7      33 ..      28      54 ..      23      59 .. 0.86
   2 ?    4.8   0.0      0.04        38      10      35 ..      83     108 ..      79     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00057
      HTH_26  7 adrgitkseLargtgisaatlsrlvkg 33
                 +r+i ++eL++++ +s++t++r+++ 
  CTQ28780.1 28 EEREIGITELSQRVMMSKSTVYRFLQT 54
                79*********************9985 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.04
      HTH_26  10 gitkseLargtgisaatlsrlvkgkp 35 
                  ++  +L r ++i+   lsrl k+++
  CTQ28780.1  83 ALQNVDLVRSADIQMRELSRLTKETI 108
                 556779*****************985 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-05     0.011       8      55 ..      20      65 ..      17      69 .. 0.88
   2 ?   -2.9   0.0       7.1   6.7e+03      11      27 ..      76     100 ..      76     104 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
                HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrp 55
                + +L aLg + +  + ++el +r  +sks+v r l+ + + G+v ++ 
  CTQ28780.1 20 FGILQALGEERE--IGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEG 65
                567888888887..999***************************9874 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.1
                 HHHHHCTTTS........EEEHHHH CS
      MarR_2  11 LaaLgrrpgr........dltvgel 27 
                 L++Lg+r  +        d+ ++el
  CTQ28780.1  76 LFELGARALQnvdlvrsaDIQMREL 100
                 6777777655554444444555555 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.8e-05     0.017       9      67 ..      15      72 ..       8      82 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.8e-05
                HHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEE CS
        Rrf2  9 yalhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrL 67
                 +l++  +L++  ee+ + ++e+++r+ +s+s + + l++++  g+v  ++G +  y+L
  CTQ28780.1 15 SVLKVFGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKSLGYVA-QEGESEKYSL 72
                56778888988889999*****************************95.5666666655 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.8e-05     0.017      19      56 ..      20      57 ..      15      58 .. 0.92
   2 ?   -2.2   0.0       6.9   6.5e+03      15      46 ..      66      99 ..      61     109 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.8e-05
                HHHHHHHHHHSEEEHHHHHHHCT--HHHHHHHHHHHHH CS
         Mga 19 yqllkflfeeeevsieelaqelyiSestlkrkikelnk 56
                + +l+ l ee+e+ i+el+q++++S+st++r ++ ++ 
  CTQ28780.1 20 FGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKS 57
                67899999***********************9999886 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 6.9
                HSHHHHHHHHHH..HHSEEEHHHHHHHCT--HHH CS
         Mga 15 eslkyqllkflf..eeeevsieelaqelyiSest 46
                es+ky l   lf    + ++  +l ++  i+   
  CTQ28780.1 66 ESEKYSLTLKLFelGARALQNVDLVRSADIQMRE 99
                5777777777773334444444555555555555 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-05     0.014       7      47 ..      21      61 ..      18      64 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
                HHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        MarR  7 viLrilyeqgplsvseLakklgvskstvtrvldrLekkGli 47
                 iL  l e+ ++ ++eL  ++++skstv r+l ++   G++
  CTQ28780.1 21 GILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKSLGYV 61
                58999****************************99888887 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.5e-05     0.023       9      61 ..      20      75 ..      15      94 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.5e-05
      HTH_45  9 adILeais.egeakkTkimykanLsykllnkYLdmLvekgli..kkskekYvlTek 61
                + IL+a+  e e   T++  ++ +s +++ ++L+++ + g++  + ++ekY+lT k
  CTQ28780.1 20 FGILQALGeEREIGITELSQRVMMSKSTVYRFLQTMKSLGYVaqEGESEKYSLTLK 75
                568888875777889***************************6444899*****66 PP

>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.2e-05     0.021      35      60 ..      38      63 ..      15     109 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.2e-05
                HTTTT--HHHHHHHHHHHHHTTSEEE CS
         FUR 35 eedpeislaTVYrtLklleeaglvke 60
                +++  +s +TVYr L++++++g v +
  CTQ28780.1 38 SQRVMMSKSTVYRFLQTMKSLGYVAQ 63
                567789****************9976 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00014      0.13      14      60 ..      21      67 ..      19      68 .. 0.95
   2 ?   -3.0   0.0       8.4     8e+03      46      56 ..      82      92 ..      82      94 .. 0.83
   3 ?   -1.8   0.0       3.7   3.5e+03      10      10 ..     155     155 ..     124     191 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
                HHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
      HTH_20 14 rilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvreg 60
                +il+aL ++++   +el +r+ +sk+t+++ L+++ + g+v +++e+
  CTQ28780.1 21 GILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGES 67
                79*****************************************9997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.4
                HHHHHCTTEEE CS
      HTH_20 46 rvLeeagLvev 56
                r+L+ ++Lv++
  CTQ28780.1 82 RALQNVDLVRS 92
                78999999986 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.7
                 H CS
      HTH_20  10 P 10 
                 +
  CTQ28780.1 155 R 155
                 2 PP

>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     9e-05     0.085      25      63 ..      22      60 ..       7      63 .. 0.89
   2 ?   -2.8   0.0         7   6.6e+03      17      34 ..     234     251 ..     230     256 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9e-05
                HHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSH CS
       HTH_6 25 ilaspdkaielsikalAkaaavSeativrfakkLGfkGF 63
                il+   + +e++i +l++    S++t+ rf +++   G+
  CTQ28780.1 22 ILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKSLGY 60
                67777888999*********************9988888 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7
                 HHHHHHHHHHH-S---TT CS
       HTH_6  17 sekkiaeyilaspdkaie 34 
                 se+++ ey+    + a++
  CTQ28780.1 234 SEERLHEYVAMLHQAARK 251
                 777777777554444444 PP

>> Dimerisation2  Dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00019      0.18      19      77 ..      15      73 ..      12      76 .. 0.80
   2 ?   -0.4   0.0       1.3   1.2e+03      20      63 ..      73     114 ..      66     120 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
  Dimerisation2 19 ceLgvFdlLke...eeplsaeevaeelgasvkGterLldacvaLgLLerekkeekkalYsnt 77
                   + L+vF +L+    e++    e+++++ +s + + r+l+++ +Lg   +e   ++++ Ys t
     CTQ28780.1 15 SVLKVFGILQAlgeEREIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQE---GESEKYSLT 73
                   66999999987633556669*************************99955...334678776 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.3
  Dimerisation2  20 eLgvFdlLkeeeplsaeevaeelgasvkGterLldacvaLgLLe 63 
                     L++F+l +    l+  ++ ++ +++++ ++rL +  + Lg L 
     CTQ28780.1  73 TLKLFELGAR--ALQNVDLVRSADIQMRELSRLTKETIHLGALD 114
                    6888888766..88888999999999999999999998888887 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00028      0.27       8      36 ..      22      50 ..      21      56 .. 0.94
   2 ?   -1.4   0.0       2.3   2.2e+03      12      26 ..      89     103 ..      87     105 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
  HTH_AsnC-type  8 ILeaLqedaRisyaeLAervGlSestvlr 36
                   IL+aL e   i  +eL++rv +S stv r
     CTQ28780.1 22 ILQALGEEREIGITELSQRVMMSKSTVYR 50
                   9**************************87 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.3
  HTH_AsnC-type  12 LqedaRisyaeLAer 26 
                    L + a i ++eL++ 
     CTQ28780.1  89 LVRSADIQMRELSRL 103
                    567789999***996 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00016      0.15      21      65 ..      36      79 ..      22      86 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
                CCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEE CS
        PadR 21 elsegllelseGslYpaLkrLekeglveseweesgegpprkyYrl 65
                els+  + +s++++Y+ L++++  g+v++e e ++ + + k+++l
  CTQ28780.1 36 ELSQR-VMMSKSTVYRFLQTMKSLGYVAQEGESEKYSLTLKLFEL 79
                44443.6789*******************9998887777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2113.21
//
Query:       CTQ28781.1  [L=456]
Description: putative transporter; MFS superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-51  173.5  45.3    5.8e-51  173.5  45.3    1.7  2  MFS_1     Major Facilitator Superfamily
    8.9e-07   28.1  13.7    8.9e-07   28.1  13.7    3.2  3  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
      0.025   12.9  13.6      0.078   11.3   2.4    2.4  2  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.5  45.3   9.7e-55   5.8e-51       2     352 ..      22     412 ..      21     413 .. 0.92
   2 ?    1.2   0.3     0.024   1.4e+02     129     168 ..     408     446 ..     406     455 .. 0.62

  Alignments for each domain:
  == domain 1  score: 173.5 bits;  conditional E-value: 9.7e-55
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 +l++ ++ l+ +i+++alp ++a+dl++sp++  +++ +y ++ ++a lpl++l+d +G rr++ +gl++f++++l++++ s +  +l ++rv qGlg+
  CTQ28781.1  22 VLGLTMAVLDGAIANVALP-TIASDLNASPAASIWIVNAYQIAIVIALLPLSFLGDMVGYRRIYKIGLVVFIFTSLACAL-SRSLeMLTFARVAQGLGG 118
                 68899999***********.******************************************************777776.89999************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 +al+++  ali+ ++p++  gr++g+ s  ++++++ gp ++++++s+++W+++f+i+ +++++afvl++ +lp +  ++k  +    +          
  CTQ28781.1 119 AALMSVNTALIRLIYPQRFLGRGMGINSFVVAVSSAAGPTIAAAILSLASWQWLFLINVPLGIVAFVLAMRFLPPNSARSKIIRFD--Lpsaimnaltf 215
                 *******************************************************************9888886666666666554..2469******* PP

       MFS_1 189 ....................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllagllla 251
                                                     + t p pl+p    ll+ p + + ++++++ f++ +++++ lp++lq+ +g s  +++glll 
  CTQ28781.1 216 gllitalsgfaqgqstqlvlaevaamlvvgfffvrrQLTMPVPLLP--VDLLRIPLFSLSICTSICSFCAQMLAMVSLPFFLQSMMGRS-EVETGLLLT 311
                 **********988888888888888888888887777777777777..5555555443699999999989999****************.9******** PP

       MFS_1 252 llalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslgga 350
                    l+++++a+lag+l+ +  +     ++ll+++++++glall+ + s + +++ ++l+G g+g+++++ +  ++ +ap +++g asg  +ta+ lg +
  CTQ28781.1 312 PWPLATMVMAPLAGYLIEKCHAGLLGAIGLLIMACGLFGLALLPSSPSDLDIIWRMALCGAGFGLFQSPNNHTIVASAPSHRSGGASGMLGTARLLGQS 410
                 ************************************************************************************************998 PP

       MFS_1 351 lg 352
                  g
  CTQ28781.1 411 TG 412
                 77 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.024
       MFS_1 129 gfslGailgpllggllasslgWravfyilaivsllafvlf 168
                 g s Ga+l +ll  ll  + g + + ++++ ++++a+++ 
  CTQ28781.1 408 GQSTGAALVALLFNLLG-NNGTHTALLLAGTLAIVAALIS 446
                 44556666666666666.5568888888888888887763 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1  13.7   1.5e-10   8.9e-07      32     197 ..      37     198 ..      17     212 .. 0.85
   2 ?   -1.1   2.0      0.11   6.3e+02     261     335 ..     279     352 ..     265     378 .. 0.68
   3 ?    1.9   1.0     0.013        80      47      95 ..     397     448 ..     365     453 .. 0.68

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.5e-10
                 STT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTT CS
    Sugar_tr  32 fglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEi 130
                   l +  s+ ++s   s +iv+++++  +i  l +++lgd++G++ ++ i+ v+f+  ++ +a++    s+e+l+++Rv  G+g  +   + + +i  i
  CTQ28781.1  37 VALPTIASDLNASPAASIWIVNAYQIAIVIALLPLSFLGDMVGYRRIYKIGLVVFIFTSLACALSR---SLEMLTFARVAQGLGGAALMSVNTALIRLI 132
                 333344444445556689************************************************...****************************** PP

                 S-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHH CS
    Sugar_tr 131 ApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPry 197
                  p++  g+ ++++ + +++    + ++ +++    + ++w +l+ + l +  ++l+++++ P+S r 
  CTQ28781.1 133 YPQRFLGRGMGINSFVVAVSSAAGPTIAAAILSLAS-WQWLFLINVPLGIVAFVLAMRFLPPNSARS 198
                 ****************************99999999.788888888887777788888888888775 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.11
                 HHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 261 lqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg 335
                 + ++ q+  + ++ ++  +++    +++ ll t    ++ ++a +++ +l++++    l  +G+++ma+ ++ l+
  CTQ28781.1 279 CSFCAQMLAMVSLPFFLQSMMGRSEVETGLLLTPWPLATMVMAPLAG-YLIEKCHAGLLGAIGLLIMACGLFGLA 352
                 55566666666666666666666666666666666666655555555.899998887777888888888777776 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.013
                 HHHHHHHTHHHHHHHHHHHHHHHHHHTTHH...HHHHHHHHHHHHHHHHHH- CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRk...kslliaavlfvigavlqaa 95 
                  sg++  + l+G+  G+ ++ ll + +G+     +ll a++l++++a+++++
  CTQ28781.1 397 ASGMLGTARLLGQSTGAALVALLFNLLGNNgthTALLLAGTLAIVAALISGL 448
                 3577777788888888888888888888752225688888888888888765 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.4   1.3e-05     0.078       8      86 ..      22     101 ..      17     125 .. 0.87
   2 ?    7.0   3.6   0.00026       1.6     288     378 ..     262     352 ..     181     357 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.3e-05
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP   8 llglvq.amvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslllalP 86 
                 +lgl+  ++ +++ ++++ ti    + + + s +i+ +++i+ ++++l +s++g+ +   r+  ig++++ + sl +al 
  CTQ28781.1  22 VLGLTMaVLDGAIANVALPTIASDLNASPAASIWIVNAYQIAIVIALLPLSFLGDMVGYRRIYKIGLVVFIFTSLACALS 101
                 444444377788999*****************************************999999999999999999999885 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00026
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
        OATP 288 krllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklv.lvvsllsll 378
                 ++ll+ p+f l i++s++ + + +  ++ lp +l++  + s+ e  ll+ +  +  +++  l +G+l++k++    +++ l  + ++l+ l+
  CTQ28781.1 262 VDLLRIPLFSLSICTSICSFCAQMLAMVSLPFFLQSMMGRSEVETGLLLTPWPLATMVMAPL-AGYLIEKCHAGLLGAIGLLiMACGLFGLA 352
                 67888889999999999999999999999999999999999999999988888888888764.67888888888887665540445555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.19s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 3698.87
//
Query:       CTQ28782.1  [L=294]
Description: membrane-associated Zn-dependent endopeptidase; self-cleaved [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-39  135.8   1.0    4.1e-39  134.4   1.0    1.7  1  Peptidase_M48    Peptidase family M48
    4.3e-05   22.9   0.0    7.7e-05   22.0   0.0    1.5  1  Peptidase_M56    BlaR1 peptidase M56
     0.0048   16.5   0.0     0.0071   15.9   0.0    1.3  1  Peptidase_M1     Peptidase family M1 domain
  ------ inclusion threshold ------
      0.049   13.5   0.0       0.08   12.8   0.0    1.3  1  SprT-like        SprT-like family
        6.3    6.9   6.5        0.5   10.5   1.4    1.8  2  DUF2614          Zinc-ribbon containing domain
        8.2    6.5   9.7        1.1    9.3   2.4    2.4  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   1.0   1.4e-42   4.1e-39       3     194 ..      74     289 ..      72     291 .. 0.84

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 1.4e-42
                    -SSHHHHHHHHHHHHTT-..-EEEEEEE-GGGT-EEEEESSS-E.EEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHH.HHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Peptidase_M48   3 reaelkevveelakeaglpkpltkvyvvnspkrNAFalgggknk.rivltdgLlkqllseeelaaVlGHElGHikhrhsvvs.livsllasillll 96 
                    +e++l ++v + a+++g+  ++++v+++++p++NAFa+g       +++++gLl q++s++e +aV++HE++Hi+++++v++ li+++++++++++
     CTQ28782.1  74 TERWLMNTVAQQAQQVGI--AMPQVAIYHAPDINAFATGARRDAsLVAVSTGLL-QNMSRDEAEAVIAHEISHIANGDMVTMtLIQGVVNTFVIFI 166
                    789***************..*********************8889*********.***************************99999999999999 PP

                    HHHHHTT-S.....HHHHHTT--S---HHHHHHHHHHTT...........HHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHH CS
                    xxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48  97 glallisra.....eedaagafldalavliglliillfl...........alSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrs 176
                     ++++  +a     ++++ g +   ++ +++++  +l+l           ++SR+rE+ AD+ +++l+  +++++ al++l+  +e q+ s+    
     CTQ28782.1 167 SRVIAQIAAgflggNREDEGESSNGNPLIYFAVATVLELvfgilasiitmWFSRYREFHADAGSARLVG-REKMIAALQRLKTSYEPQEASSMMAF 261
                    987665444111112333334444455555555555555799999************************.*****************776666544 PP

                    ..........HHS-SS--HHHHHHHHHH CS
                    ..........xxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 177 ..........ellstHPplleRiqalke 194
                              el++tHPpl +Ri+al++
     CTQ28782.1 262 cingkaksmsELFMTHPPLDKRIEALRS 289
                    6777777777****************96 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.6e-08   7.7e-05     140     220 ..      75     157 ..      13     165 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.6e-08
  Peptidase_M56 140 aeelkeaLkeakeemqlkr.nikirlsssidsPavlgllk..prIvlPadflkklsdeeleyillHElaHlkrkDllvnllvav 220
                    +  l + +++  +++++   +++i+ ++ i+  + +g+ +  + + +++ +l+++s +e e +++HE +H++++D++   l++ 
     CTQ28782.1  75 ERWLMNTVAQQAQQVGIAMpQVAIYHAPDINA-FATGARRdaSLVAVSTGLLQNMSRDEAEAVIAHEISHIANGDMVTMTLIQG 157
                    44555666666666664431567777777776.445555422457789999**************************9999875 PP

>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.4e-06    0.0071      56      87 ..     122     153 ..      80     158 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.4e-06
                   TTTS-HHHHHHHHHHHHHHHHHHHBTTTEEES CS
  Peptidase_M1  56 penssesdkrsvaeviaHElaHqWfGnlVtmk 87 
                    +  ++ ++ +++ viaHE++H   G++Vtm 
    CTQ28782.1 122 TGLLQNMSRDEAEAVIAHEISHIANGDMVTMT 153
                   3344556788999*****************96 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.7e-05      0.08      19      77 ..      94     146 ..      68     154 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.7e-05
   SprT-like  19 ggvkiiwskrlnttaGranlkratvrhhasIeLseklldsrsedrllntLaHElcHlal 77 
                 ++v i     +n  a  a+           +  s+ ll++ s+d+ + ++aHE+ H+a+
  CTQ28782.1  94 PQVAIYHAPDINAFATGARRDA------SLVAVSTGLLQNMSRDEAEAVIAHEISHIAN 146
                 4444444444444444444444......78899999*********************98 PP

>> DUF2614  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.4   0.00017       0.5      11      76 ..      11      75 ..       4      86 .. 0.85
   2 ?   -3.6   0.3       3.9   1.2e+04      40      47 ..     204     211 ..     195     220 .. 0.41

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
     DUF2614 11 tfalllvfiglivmyigllfkeselllvlflllGlllvlastvvyfwiGllstkavqvvcpeceke 76
                ++a+++vf gl++   g+  ++++ ll++ ll+G+   ++s ++  w+ l s    +++ p  e e
  CTQ28782.1 11 NLAVMVVF-GLVLSLTGIQSSSMTGLLIMALLFGFGGSIVSLMMSKWMALKSVGGEVIEQPRNETE 75
                56777776.789999***********************************9998888888877665 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.9
     DUF2614  40 flllGlll 47 
                  l++G+l+
  CTQ28782.1 204 ELVFGILA 211
                 22222222 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.4   0.00036       1.1      42      92 ..       4      58 ..       1      76 [. 0.69
   2 ?    1.2   0.8      0.12   3.7e+02      65      90 ..     192     217 ..     117     225 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00036
  Phage_holin_3_6 42 aagvlallalllllvalalala.a...lwlaalivaavllvlagvlalvglkklk 92
                     +a++l+   +++++++l+l l+ +   ++ + li+a+++   + ++ l++ k ++
       CTQ28782.1  4 IALFLLTNLAVMVVFGLVLSLTgIqssSMTGLLIMALLFGFGGSIVSLMMSKWMA 58
                     6778888888888888887776667878888888888888777777777666443 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.12
  Phage_holin_3_6  65 lwlaalivaavllvlagvlalvglkk 90 
                        l ++ va vl ++ g+la ++ + 
       CTQ28782.1 192 NPLIYFAVATVLELVFGILASIITMW 217
                      33444445555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2235.12
//
Query:       CTQ28783.1  [L=682]
Description: carboxy-terminal protease for penicillin-binding protein 3 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-58  196.1   5.7    6.7e-58  196.1   5.7    1.6  2  TSP_NTD        Tail specific protease N-terminal domain
    5.3e-53  179.0   0.1    8.8e-53  178.3   0.1    1.4  1  Peptidase_S41  Peptidase family S41
    2.5e-42  144.7   4.1    6.3e-42  143.4   4.1    1.7  1  DUF3340        C-terminal domain of tail specific protease (D
    6.5e-15   55.3   0.5    1.4e-14   54.2   0.5    1.6  1  PDZ            PDZ domain
    4.1e-06   26.5   1.2    1.5e-05   24.8   1.2    1.9  1  PDZ_6          PDZ domain
    0.00025   21.3   0.7    0.00069   19.9   0.7    1.8  1  PDZ_2          PDZ domain


Domain annotation for each model (and alignments):
>> TSP_NTD  Tail specific protease N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   5.7   2.2e-61   6.7e-58       2     193 .]      49     232 ..      48     232 .. 0.99
   2 ?   -2.2   0.1       1.4   4.3e+03      93      93 ..     599     599 ..     552     651 .. 0.48

  Alignments for each domain:
  == domain 1  score: 196.1 bits;  conditional E-value: 2.2e-61
     TSP_NTD   2 vekLereHykkkklddelskkvfdrYlkqLDpqklyflqsDidefekyreklddalkngdlsfaeeiynlyqkrieerkeyikellkkpfdfskdetle 100
                 +++++r Hy++ +ld+++s k+fdrYl+ LD++++++l+sD+++f ++++++ d+l++g+l+ ++++ynl q+r  er++y+ ++l++p+df+ +++++
  CTQ28783.1  49 TSRFTRSHYRQFDLDNAFSAKIFDRYLNLLDYSHNVLLASDVAKFAAKKDQIGDELRSGKLDVFYDLYNLGQQRRFERYQYALKVLERPMDFTGNDNFN 147
                 67899********************************************************************************************** PP

     TSP_NTD 101 ldrekapwakneaelkelwrkrlkneilaelklkskkdkeikkskeelekryeeqlkrlsqrlekkksedvfelflnalassfDPHTsYfspk 193
                 ldr+kapw+k+eael++lw  ++k++ l +lkl++k+dkei++   +l++ry+ +++rl q    ++sedvf+l ++a+a+ +DPHT+Y+sp+
  CTQ28783.1 148 LDRSKAPWPKDEAELNKLWDAKVKFDQL-SLKLAGKDDKEIRD---TLTRRYKFAIRRLAQ----TNSEDVFSLAMTAFAREIDPHTNYLSPR 232
                 ****************************.***********999...***************....***************************7 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
     TSP_NTD  93 f 93 
                  
  CTQ28783.1 599 K 599
                 1 PP

>> Peptidase_S41  Peptidase family S41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.3   0.1   2.9e-56   8.8e-53       1     164 [.     356     528 ..     356     530 .. 0.95

  Alignments for each domain:
  == domain 1  score: 178.3 bits;  conditional E-value: 2.9e-56
                    EEEEEEES-BCCTHHHHHHHHHHHHHHTTSSEEEEE-TTB-EBEHHHHHHHHHCCSSSSEEEEEECTTSEEEEEEHTCSS-STT-BSSEEEEEE-T CS
  Peptidase_S41   1 kiGyiripsfsektkeelakalkelkkknvkglilDlRnNgGGlldeavelaslflddglivstrgrdgkkkkksktekaseevqykgplvvLvne 96 
                    k+G++ ip f    +++++  l++l+k+nv+++i+DlR+NgGG l+eav+l++lf+++g++v++r+++gk ++ s+++     v ykgplvvLv++
     CTQ28783.1 356 KVGVLDIPGFYVGLTDDVKVQLQKLEKQNVSSIIIDLRSNGGGALTEAVSLSGLFIPSGPVVQVRDNNGKVREDSDNDGV---VYYKGPLVVLVDR 448
                    79********8899**********************************************************55554444...56*********** PP

                    TBBTHHHHHHHHHHHTTSEEEEES--SB-EEEEEEEE-TT............SSEEEEEEEEEEETTSBCTTTTS---SE CS
  Peptidase_S41  97 gsaSaseifagalkdngratlvGertfGkgtvqsvvelnd............gsalkltiakyltpdgrsiekkGvePdi 164
                     saSaseifa+a++d+gra++vGe+tfGkgtvq++++ln+             +++++ti+k+++ +g+s+++kGv+Pdi
     CTQ28783.1 449 FSASASEIFAAAMQDYGRALIVGEPTFGKGTVQQYRSLNRiydqmlrpewpaLGSVQYTIQKFYRINGGSTQRKGVTPDI 528
                    **************************************8889999999999999*************************9 PP

>> DUF3340  C-terminal domain of tail specific protease (DUF3340)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   4.1   2.1e-45   6.3e-42       4     154 ..     537     667 ..     534     668 .. 0.96

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 2.1e-45
     DUF3340   4 eeiGEssldnALpWDkIspanykkygkiaallpkLkkksekRiakdpeFklleediawlkerkek.ktvsLnekkrkaereeqeakrlarenerekakg 101
                  e+GE+++dnALpWD+I++a+y k g+++++ p+L k++++Ria+dpeF+++ +dia++++ k+k + vsLn+++r++e+ee++a rlar n r k++g
  CTQ28783.1 537 RETGEQYEDNALPWDSINAATYVKSGDLTPFGPELLKRHDERIAQDPEFQYIMKDIARYNAMKDKrNIVSLNYAQREKENEEDDAIRLARINDRLKREG 635
                 69**************************************************************99********************************* PP

     DUF3340 102 lkplksl.lleknlekeeelekedekeaeeddpkdkekkDiylrEaanIlaDli 154
                 ++plk+l +l                      pkd++++D+yl+E+++I+ Dl+
  CTQ28783.1 636 KPPLKKLdDL----------------------PKDYQEPDPYLDETVHIAVDLA 667
                 *****77555......................********************97 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.5   4.6e-18   1.4e-14       5      82 .]     240     320 ..     236     320 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 4.6e-18
                 ETS.TTSESSEEEEEETTSSSSSSEEEEEECTTSHHHHHT.SSTTEEEEEETT.....EETTTSHHHHHHHHHHTTTS.EEEEEEE CS
         PDZ   5 eke.grgglGfslkggsdqrgdkgifvsevlpggaaeadg.lkvGDkIlsvNg.....vdvenvsheeavqaikgskg.kvtLtil 82 
                 e++ + +g+G+ l++++d       +++++++gg+a++++ ++vGD+I++v++     vdv +++++++v++ikg+kg kv+L+il
  CTQ28783.1 240 EMSlSLEGIGAVLQMDDD-----YTVINSLVAGGPAAKSKaISVGDRIVGVGQtgksmVDVIGWRLDDVVALIKGPKGsKVRLEIL 320
                 4555899*******9888.....9*********99999999*******************************************95 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   1.2   4.9e-09   1.5e-05       1      54 [.     260     319 ..     260     320 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 4.9e-09
       PDZ_6   1 vVtaVdpgsPAdrAG.lrvGDiilsvNG.....qpveglsladvaallrgsagesvvlvv 54 
                 v+ + ++g+PA++   + vGD+i+ v+      ++v+g+ l+dv+al++g+ g++v+l++
  CTQ28783.1 260 VINSLVAGGPAAKSKaISVGDRIVGVGQtgksmVDVIGWRLDDVVALIKGPKGSKVRLEI 319
                 578899*******888***********74444469***********************97 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.7   2.3e-07   0.00069       2      77 ..     247     327 ..     246     332 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.3e-07
                 ...XX------..-EEEEEE-TTSGGGGT..--TT-EEEEETTB--SSHHHHH.......HHHHTS-TT-EEEEEEEETTEEEE CS
       PDZ_2   2 ylGvsvsdeedtggvlvvsVkeggPaakag.lkagDvilkvdgkkvksledli.......slllkkkpGdtVkltvlRdgkkkt 77 
                 ++G+ +++++d    ++ s   ggPaak++ +  gD+i+ v+ +   s  d+i        +l k+ +G++V+l++l  gk ++
  CTQ28783.1 247 GIGAVLQMDDD--YTVINSLVAGGPAAKSKaISVGDRIVGVGQTGK-SMVDVIgwrlddvVALIKGPKGSKVRLEILPAGKGAK 327
                 69********9..****************************97754.4444444555544666799999999999988777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.35
# Mc/sec: 5777.79
//
Query:       CTQ28784.1  [L=225]
Description: ProP transporter amplifier [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-42  142.7   0.4    6.8e-42  141.8   0.1    1.6  2  ProQ      ProQ/FINO family
    5.4e-24   83.4   1.8    9.1e-24   82.6   1.8    1.4  1  ProQ_C    ProQ C-terminal domain
     0.0071   16.7   0.1       0.03   14.6   0.1    2.1  3  S1        S1 RNA binding domain
  ------ inclusion threshold ------
      0.015   15.4   0.0       0.03   14.4   0.0    1.4  1  PARP_reg  Poly(ADP-ribose) polymerase, regulatory domain
        0.1   12.9   0.0       0.36   11.1   0.1    1.8  2  eIF2_C    Initiation factor eIF2 gamma, C terminal
        5.3    6.3   8.6        7.1    5.9   8.6    1.3  1  DUF4407   Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> ProQ  ProQ/FINO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8   0.1   2.3e-45   6.8e-42       2     109 ..       8     115 ..       7     116 .. 0.98
   2 ?   -0.2   0.2       0.3     9e+02      90     106 ..     112     128 ..     111     144 .. 0.64

  Alignments for each domain:
  == domain 1  score: 141.8 bits;  conditional E-value: 2.3e-45
        ProQ   2 ksvkeliaelaekFPkaFskegeakPLkiGIfedllerladkeklskkklrkaLktytsslrYlkavkegaaRvDLdGnpvgevteehaehAkaqlker 100
                 +s+ke+ia+lae+FP++Fs+egea+PLkiGIf+dl+er   + +lsk++lr+aL+ ytss+rYl++vk+ga RvDLdGnp+ge++e+h +hA++ql+e+
  CTQ28784.1   8 NSSKEVIAFLAERFPQCFSAEGEARPLKIGIFQDLVERVGGEMNLSKTQLRAALRLYTSSWRYLYGVKAGAIRVDLDGNPCGELEEQHIAHARQQLEEA 106
                 6789*********************************************************************************************** PP

        ProQ 101 kqkraakrk 109
                 k++++a+r+
  CTQ28784.1 107 KARVQAQRA 115
                 ******997 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.3
        ProQ  90 aehAkaqlkerkqkraa 106
                 a++A++q+k+r++ +aa
  CTQ28784.1 112 AQRAAQQAKKREAAAAA 128
                 55666666666555544 PP

>> ProQ_C  ProQ C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   1.8     3e-27   9.1e-24       2      51 .]     176     225 .]     175     225 .] 0.96

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 3e-27
                 SSSS-TT--B---SSSS---EEEEEE-SSSEEEEETTS-B--B-TTT--- CS
      ProQ_C   2 laeLkvGqqVkVklGkspmpAtileiaKddVrVqLasGlvvkVkaehLfl 51 
                  + L+vGq+ kVk+G+++m+At+lei+Kd+VrVqL+sG++++V+aehL++
  CTQ28784.1 176 VSVLTVGQALKVKAGNNAMDATVLEITKDGVRVQLTSGMSMIVRAEHLVF 225
                 6789********************************************85 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.7   5.2e+03      15      26 ..      74      86 ..      72      88 .. 0.75
   2 ?   -2.2   0.0       1.8   5.4e+03      49      59 ..     178     188 ..     173     191 .. 0.86
   3 !   14.6   0.1     1e-05      0.03       5      37 ..     191     223 ..     186     224 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.7
                EETTEEEEEET.T CS
          S1 15 vtkgGafVelg.n 26
                v  g+++V+l+ n
  CTQ28784.1 74 VKAGAIRVDLDgN 86
                5668999999944 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.8
                 CEETTEEEEEE CS
          S1  49 vlkvGdevkvk 59 
                 vl+vG+ +kvk
  CTQ28784.1 178 VLTVGQALKVK 188
                 78999999998 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 1e-05
                 TCEEEEEEEEEETTEEEEEETTTEEEEEEGGGS CS
          S1   5 gevveGeVtsvtkgGafVelgngvegfvpasel 37 
                 ++ ++++V ++tk+G++V+l  g++  v a++l
  CTQ28784.1 191 NNAMDATVLEITKDGVRVQLTSGMSMIVRAEHL 223
                 56799**********************999875 PP

>> PARP_reg  Poly(ADP-ribose) polymerase, regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     1e-05      0.03      27      67 ..      79     120 ..      74     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1e-05
    PARP_reg  27 leiDlkkmPLGkLskeqikkgyevLkelselikkkekaek.l 67 
                 +++Dl+  P G+L++++i ++ + L+e ++ ++++++a++ +
  CTQ28784.1  79 IRVDLDGNPCGELEEQHIAHARQQLEEAKARVQAQRAAQQaK 120
                 6799******************************99987422 PP

>> eIF2_C  Initiation factor eIF2 gamma, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.4   4.3e+03      46      73 ..      73     101 ..      65     106 .. 0.74
   2 ?   11.1   0.1   0.00012      0.36      21      60 ..     175     214 ..     158     221 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
                 EEESSEEEEEEEEEEE-S.TTEEEEEEEE CS
      eIF2_C  46 svkkdeakvkLkkPvcae.kgekialsRr 73 
                  vk   ++v+L    c e ++++ia  R+
  CTQ28784.1  73 GVKAGAIRVDLDGNPCGElEEQHIAHARQ 101
                 57778888899877777746777887776 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00012
                 C-----TTEEEEEEETTEEEEEEEEEEESSEEEEEEEEEE CS
      eIF2_C  21 kveklkkkEvLmlniGsastggvvtsvkkdeakvkLkkPv 60 
                 +v+ l+ ++ L ++ G +++ ++v +++kd ++v+L++ +
  CTQ28784.1 175 DVSVLTVGQALKVKAGNNAMDATVLEITKDGVRVQLTSGM 214
                 48999*******************************9765 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   8.6    0.0024       7.1     121     187 ..      93     156 ..      31     177 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0024
     DUF4407 121 kelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaake 187
                 +++ +  +++l++  a+ +aq+aa qa+ ++a a++ ++ + +++e ++ +++    ++ +g++ ++
  CTQ28784.1  93 EQHIAHARQQLEEAKARVQAQRAAQQAKKREAAAAAGQQDEGVRRERKPRPQQP---RRKEGAEQRK 156
                 233344444488888888888888888888888888888888888888866433...3334444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1743  (0.0972168); expected 358.6 (0.02)
Passed bias filter:                      777  (0.0433376); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 1685.26
//
Query:       CTQ28785.1  [L=184]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-12   46.6   0.2    5.3e-12   46.2   0.2    1.2  1  GAF_2     GAF domain
    8.1e-08   33.0   0.1      1e-07   32.7   0.1    1.2  1  GAF       GAF domain
     0.0079   16.5   0.0      0.011   16.1   0.0    1.3  1  GAF_3     GAF domain


Domain annotation for each model (and alignments):
>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.2   8.9e-16   5.3e-12      11     135 ..      54     168 ..      42     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 8.9e-16
                 HHHHHHHSS..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EEEEEE-TTS---EEEE CS
       GAF_2  11 vldelvelgaalgyillvdddgglrlaawgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglpaghaglrsflavPlisegrvvGvln 109
                 ++++l e+++a g++ll  +++   l+   ++++  + ++  p+g+g++g a+++ +   ++d+ +    +g+ a +a+ +s++++Pl+ +g+++Gvl 
  CTQ28785.1  54 LFERLSEVNWA-GFYLL--EGDT--LVLGPFQGKLACVRI--PVGRGVCGAAVAQAQVQRVEDVHA---FDGHIACDAASNSEIVFPLRVNGQIIGVLD 142
                 66777777777.66555..4455..889999999999999..9************99999999555...89999************************* PP

                 ES......--HHHHHHHHHHHHHHHH CS
       GAF_2 110 lyankppafdeedlelLeelaeqiai 135
                 + +   ++f++ed + L++l e++  
  CTQ28785.1 143 IDSPAYGRFTAEDEQGLRTLVEHLEK 168
                 *8888888**************9865 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.1   1.7e-11     1e-07      38     131 ..      80     168 ..      41     170 .. 0.74

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.7e-11
                 EEECC.EEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEETTEEEEEEEEEESSS.CSHHHHHHHHHHHHHHHHH CS
         GAF  38 qasrw.lfmkngrgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvndgelwGllvlhnpsp.pftreelellqvladqvav 131
                 q+    +++++grg+cg+++a+ q+ +++d+ + + + +           ++s +v Pl+++g+++G+l++++p   +ft e+++ l++l +++++
  CTQ28785.1  80 QGKLAcVRIPVGRGVCGAAVAQAQVQRVEDVHAFDGHIA-------CDAASNSEIVFPLRVNGQIIGVLDIDSPAYgRFTAEDEQGLRTLVEHLEK 168
                 33333678899******************8554333344.......47889999*******************75589************999876 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.9e-06     0.011      50     119 ..      88     162 ..      44     166 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.9e-06
       GAF_3  50 ldedsalarralssgevvsepsfaeedg.....lpdraalavPLvagrqviGvlalastkprafdaedlellesl 119
                 ++ +  ++ +a+++ +v+ + ++++ dg       +++ ++ PL++  q iGvl + s+ ++ f+aed++ l++l
  CTQ28785.1  88 IPVGRGVCGAAVAQAQVQRVEDVHAFDGhiacdAASNSEIVFPLRVNGQIIGVLDIDSPAYGRFTAEDEQGLRTL 162
                 455556667777777777777776666644433456788999****66********************9988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1370.53
//
Query:       CTQ28786.1  [L=427]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-79  263.5  32.1    6.6e-43  146.2  11.9    2.0  2  PqiA            Paraquat-inducible protein A
  ------ inclusion threshold ------
      0.028   14.0   0.6      0.094   12.3   0.6    1.8  1  XAF1_C          XIAP-associated factor 1 C-terminal domain
      0.075   13.0   2.2        0.1   12.6   0.4    2.0  2  Cytochrome_C7   Cytochrome c7 and related cytochrome c
       0.44    9.6   2.4       0.55    9.3   0.5    2.2  2  Tmemb_55A       Transmembrane protein 55A
        0.8    9.7   3.9        4.1    7.5   0.2    2.4  2  zinc-ribbons_6  zinc-ribbons
        6.1    7.1   9.7       0.26   11.4   0.5    2.9  3  Zn-ribbon_8     Zinc ribbon domain
        7.7    7.0   0.0        7.7    7.0   0.0    5.3  7  DUF983          Protein of unknown function (DUF983)


Domain annotation for each model (and alignments):
>> PqiA  Paraquat-inducible protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.6  12.2   2.4e-39   6.1e-36       3     155 ..      68     217 ..      66     218 .. 0.97
   2 !  146.2  11.9   2.6e-46   6.6e-43       1     155 [.     263     418 ..     263     419 .. 0.95

  Alignments for each domain:
  == domain 1  score: 123.6 bits;  conditional E-value: 2.4e-39
        PqiA   3 rtlalalaalillipAnllpimslsllgstseatllsgvlalweegswlvAllvflasilvPllklllllllllslklgrrprgsrrllrlleflgrWs 101
                 r+  +ala+l+l+++A + p+++l+llg + +a++l+g++++  +g++++A++v+++++++P+l ++++ +l+l   lg   +++r++l +l +l++W+
  CTQ28786.1  68 RLGSMALAMLLLMPFAWSEPLLRLHLLGVRIDANVLQGIWQMTAQGDPITAAMVLFCAVVAPVLLVVSISYLWLGNVLG---MNLRPVLLMLGKLKEWV 163
                 66779***********************************************************************887...669************** PP

        PqiA 102 MldVfvvgilvalvklgdlasiepgpgllafallvlltmlaassfdprllWdrl 155
                 Mld+++vgi va +k++d+a ++pg+gl+af+ l+ll +l+  +++ ++lW+r+
  CTQ28786.1 164 MLDIYLVGIGVASIKVQDYAFLQPGIGLVAFISLTLLSILTLIHMNVEELWERF 217
                 ****************************************************97 PP

  == domain 2  score: 146.2 bits;  conditional E-value: 2.6e-46
        PqiA   1 lqrtlalalaalillipAnllpimslsllgstseatllsgvlalweegswlvAllvflasilvPllklllllllllslklgrrprgs..rrllrllefl 97 
                 lqr++a ++a+l++l+pAnllpi  + ++g ++++t+lsg+++l+++ ++++A +vf+asilvP++k+++l++llls++++ ++  +    llrl+ ++
  CTQ28786.1 263 LQRSWAALIASLVFLLPANLLPISIIYVNGARQDDTILSGIISLASS-NIAIAGVVFIASILVPFTKVIVLFTLLLSIQFKCEQGLRtrILLLRLITWI 360
                 79*******************************************99.699***************************99955444456899******* PP

        PqiA  98 grWsMldVfvvgilvalvklgdlasiepgpgllafallvlltmlaassfdprllWdrl 155
                 grWsMld fv+++ ++l++  +l+ +++gp++++f++ v+lt+la++ +d+rllWd+ 
  CTQ28786.1 361 GRWSMLDLFVISLTMSLINRDQLLAFTMGPAAVYFGGAVILTILAVEWLDSRLLWDAH 418
                 *******************************************************985 PP

>> XAF1_C  XIAP-associated factor 1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   3.7e-05     0.094      18      36 ..      29      47 ..      18      58 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.7e-05
      XAF1_C 18 rrCsqCgiLLPLptLnkHq 36
                +rC qC++L  Lp+L++ q
  CTQ28786.1 29 QRCTQCDMLFRLPVLKRNQ 47
                7**************9877 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.63   1.6e+03      62      71 ..      25      34 ..      13      36 .. 0.71
   2 ?   12.6   0.4   4.1e-05       0.1      46      73 .]     228     253 ..     208     253 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.63
  Cytochrome_C7 62 vakkaeCakC 71
                   +a++++C++C
     CTQ28786.1 25 YAHYQRCTQC 34
                   4567788888 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.1e-05
  Cytochrome_C7  46 eslt.CgaCHdgknafsvakkaeCakCHt 73 
                    ++l+ C+ CH     ++   + +C++CHt
     CTQ28786.1 228 NNLQvCTGCHYTGYRDA---RGRCRRCHT 253
                    33335*******99995...7*******7 PP

>> Tmemb_55A  Transmembrane protein 55A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.5   0.00021      0.55     141     199 ..      21      80 ..       6     141 .. 0.86
   2 ?   -1.3   0.1      0.35     9e+02     152     205 ..     234     283 ..     219     331 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00021
   Tmemb_55A 141 elqpvgvrviCghCkntflftels.rtlarCPhCrkvssvGrryarkrsllllllglill 199
                  + p +    C+ C   f    l+ +  a CP+C      Gr+++ +r   ++l +l+l+
  CTQ28786.1  21 TPLPYAHYQRCTQCDMLFRLPVLKrNQSAWCPRCNAKVRDGRDWSLTRLGSMALAMLLLM 80 
                 3467777788*************98999******98888899999999888888877776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.35
   Tmemb_55A 152 ghCkntflftelsrtlarCPhCrkvssvGrryarkrsllllllglillviaigl 205
                 + C+    +t ++ ++ rC +C+      r  + +rs + l+ +l++l+ a  l
  CTQ28786.1 234 TGCH----YTGYRDARGRCRRCHTPLHHRRPQSLQRSWAALIASLVFLLPANLL 283
                 5554....4455667777777765555445555556666666666665555443 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2    0.0016       4.1      17      39 ..      29      58 ..      11      62 .. 0.83
   2 ?    2.9   0.4     0.042   1.1e+02      18      40 ..     232     256 ..     221     261 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0016
                    EE-TTT--.......EEEEEEE-SSS-S-- CS
  zinc-ribbons_6 17 yhCeaCqe.......dlkkealCpeCeqel 39
                     +C +C+        + ++ a Cp+C+ ++
      CTQ28786.1 29 QRCTQCDMlfrlpvlKRNQSAWCPRCNAKV 58
                    57999999999999888999******9987 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.042
                     E-TTT--..EEEEEEE-SSS-S--- CS
  zinc-ribbons_6  18 hCeaCqe..dlkkealCpeCeqele 40 
                      C  C+     +    C +C+ +l 
      CTQ28786.1 232 VCTGCHYtgYRDARGRCRRCHTPLH 256
                     5777776434456677888888875 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5    0.0001      0.26       7      37 ..      30      59 ..      27      60 .. 0.77
   2 ?   -0.5   0.1      0.54   1.4e+03      23      33 ..     227     237 ..     216     243 .. 0.76
   3 ?   -0.3   0.4      0.46   1.2e+03       7      15 ..     247     255 ..     237     264 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
  Zn-ribbon_8  7 rCeeCghefe..vlqsisdaplta.CPeCgsevr 37
                 rC++C+  f   vl     +++ a CP+C+++vr
   CTQ28786.1 30 RCTQCDMLFRlpVLK----RNQSAwCPRCNAKVR 59
                 7*****999963333....346777*****9987 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.54
  Zn-ribbon_8  23 dapltaCPeCg 33 
                  d++l++C  C+
   CTQ28786.1 227 DNNLQVCTGCH 237
                  66677799997 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.46
  Zn-ribbon_8   7 rCeeCghef 15 
                  rC++C++  
   CTQ28786.1 247 RCRRCHTPL 255
                  466666544 PP

>> DUF983  Protein of unknown function (DUF983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         6   1.5e+04       9      16 ..      29      36 ..      28      39 .. 0.79
   2 ?   -0.9   0.4      0.88   2.3e+03      36      49 ..      70      83 ..      47      97 .. 0.52
   3 ?    2.5   1.1     0.076     2e+02      27      55 ..     115     143 ..     106     160 .. 0.74
   4 ?   -1.2   0.4       1.1   2.7e+03      48      72 ..     183     207 ..     163     213 .. 0.59
   5 ?    7.0   0.0     0.003       7.7       1      40 [.     238     277 ..     238     289 .. 0.77
   6 ?   -0.9   1.3      0.87   2.2e+03      28      51 ..     321     344 ..     303     371 .. 0.58
   7 ?   -3.4   0.1       5.3   1.4e+04      29      43 ..     392     406 ..     387     414 .. 0.51

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6
      DUF983  9 daCeaCgl 16
                ++C +C++
  CTQ28786.1 29 QRCTQCDM 36
                68****86 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.88
      DUF983 36 ghlvvplallveva 49
                g ++++++ll+ +a
  CTQ28786.1 70 GSMALAMLLLMPFA 83
                33333444444444 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.076
      DUF983  27 Payfvilivghlvvplallvevayepplw 55 
                 P    +++ +++v+p++l+v ++y +  +
  CTQ28786.1 115 PITAAMVLFCAVVAPVLLVVSISYLWLGN 143
                 77778999999999999999999876444 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.1
      DUF983  48 vayepplwvhlliwlpltlllslll 72 
                 + ++p + + + i l+l+ +l+l+ 
  CTQ28786.1 183 AFLQPGIGLVAFISLTLLSILTLIH 207
                 4455566666666666666666654 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.003
      DUF983   1 FkgfLkvadaCeaCgldlsharaddgPayfvilivghlvv 40 
                 ++g+ + + +C++C + l+h r++ +      li+  +++
  CTQ28786.1 238 YTGYRDARGRCRRCHTPLHHRRPQSLQRSWAALIASLVFL 277
                 578889999*************998766666666665555 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.87
      DUF983  28 ayfvilivghlvvplallvevaye 51 
                  ++v +  ++++ +l+l ++++ e
  CTQ28786.1 321 SILVPFTKVIVLFTLLLSIQFKCE 344
                 333444444444444444444444 PP

  == domain 7  score: -3.4 bits;  conditional E-value: 5.3
      DUF983  29 yfvilivghlvvpla 43 
                  + +  +++l + ++
  CTQ28786.1 392 AVYFGGAVILTILAV 406
                 444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       994  (0.0554409); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3178.41
//
Query:       CTQ28787.1  [L=877]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-69  230.3   9.0    8.9e-16   58.0   0.1    7.4  7  MlaD         MlaD protein
  ------ inclusion threshold ------
      0.038   14.4   0.0         11    6.5   0.0    3.2  3  Herpes_HEPA  Herpesvirus DNA helicase/primase complex associa


Domain annotation for each model (and alignments):
>> MlaD  MlaD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.1   9.9e-20   8.9e-16       2      81 .]      46     137 ..      45     137 .. 0.97
   2 !   30.1   0.0   5.1e-11   4.6e-07       5      61 ..     163     229 ..     160     255 .. 0.82
   3 !   32.6   0.0     8e-12   7.2e-08       2      70 ..     280     348 ..     279     358 .. 0.92
   4 !   24.8   0.1   2.2e-09   1.9e-05       4      67 ..     394     455 ..     391     462 .. 0.95
   5 !   10.3   0.0   7.4e-05      0.67       5      71 ..     517     589 ..     513     595 .. 0.82
   6 !   35.6   0.0   9.3e-13   8.4e-09       4      81 .]     636     724 ..     634     724 .. 0.91
   7 !   37.2   0.0   2.9e-13   2.6e-09       2      65 ..     747     810 ..     746     823 .. 0.91

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 9.9e-20
        MlaD   2 gytvtaqfdnangLkvg.apVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsiped..........sraqvstggll.gekyialdpg 81 
                 g t+t+ f++ang+ +g +p+ry+Gv+vG+V++i+l++d  +++v +++++++++ +++           s a+vs+ + l g++yi + pg
  CTQ28787.1  46 GSTITIDFQSANGIVPGrTPIRYQGVEVGTVQDISLSKDLSKIEVSASIKRDMKDALRKEtqfwlvtpkaSLAGVSGLDALvGGNYIGMMPG 137
                 789******************************************************9999**************************99997 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 5.1e-11
        MlaD   5 vtaqfdnangLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsiped..........s 61 
                 +++q+++ ++L+ g+ V +r ++vGrV + +l+ ++++vt++v ++++++++++++          +
  CTQ28787.1 163 IHLQAPDLGSLNSGSLVYFRKIPVGRVYDYSLNANNQGVTIDVLIERRFTNLVKKGsrfwnvsgvkA 229
                 789*****************************************************55555555441 PP

  == domain 3  score: 32.6 bits;  conditional E-value: 8e-12
        MlaD   2 gytvtaqfdnangLkvg.apVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsipedsraqvstggl 70 
                 g+ vt+ +++  gLk+g +p +y+G++vG+ ++++l+p ++ vt ++++d++  t+++e++ +q++  +l
  CTQ28787.1 280 GVVVTLDLPDGDGLKAGsTPLMYQGLEVGQLSKLNLNPGGK-VTGEMTVDPSVVTLLREKTLIQMKKPKL 348
                 67799*******************************99888.6***********************9988 PP

  == domain 4  score: 24.8 bits;  conditional E-value: 2.2e-09
        MlaD   4 tvtaqfdnangLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsipedsraqvst 67 
                 tvt+ ++++ g+  g+p    Gv+vG+V + +l  ++++vt++v +d+++ ++i  ds+  v++
  CTQ28787.1 394 TVTLSAPESYGIDGGQPLVLHGVKVGQVLERKL--TAKGVTFQVAIDPEYRDLIHGDSKFVVNS 455
                 89*******************************..**********************9998876 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 7.4e-05
        MlaD   5 vtaqfdnangLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsiped........sraqvstggll 71 
                 + + +      ++g+ V yr   vG++ ++   p ++ + +++ +++++  +++++        +++++ ++gl+
  CTQ28787.1 517 LSLSAETLPDVQAGSVVLYRKFAVGEIIAV--KPRKDAFDIDLHIKPEYRYLLTNNsvfwaeggAKVKLDGNGLT 589
                 5556666666899*****************..7799999***************997777777777777777765 PP

  == domain 6  score: 35.6 bits;  conditional E-value: 9.3e-13
        MlaD   4 tvtaqfdnangLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsi.ped..........sraqvstggllgekyialdpg 81 
                 ++t+++ +a+++++g p+ry G+++G+++s++l   ++ v++++ l++++   + +++          s a+v+  ++l + yi+++pg
  CTQ28787.1 636 QITLHAYDAGKMAAGMPIRYLGIDIGQIQSLELITAKNEVQAKAVLYPEYVGTFaRAGtrfsvitpqiSAAGVEHLDTLFQAYINVEPG 724
                 6899999****************************************998888845558888888888******************997 PP

  == domain 7  score: 37.2 bits;  conditional E-value: 2.9e-13
        MlaD   2 gytvtaqfdnangLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsipedsraqv 65 
                 g  +++++++a++L  g+pV +rG++vG+Vt ++l   ++rv v++++ k+++ +++++s   +
  CTQ28787.1 747 GLNIVVEAPEAGSLGIGTPVLFRGLEVGTVTGLSLGSMSDRVMVKLRISKRYQYLVRNNSVFWL 810
                 66799*****************************************************987655 PP

>> Herpes_HEPA  Herpesvirus DNA helicase/primase complex associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0012        11       7      44 ..     188     225 ..     185     229 .. 0.91
   2 ?   -1.1   0.0      0.31   2.8e+03      25      42 ..     559     575 ..     545     578 .. 0.79
   3 ?    3.5   0.0     0.011     1e+02      17      43 ..     785     811 ..     773     816 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0012
  Herpes_HEPA   7 kvvdvelvlageqvtvrvllpkafdlLvtndesksnla 44 
                  +v d++l+ +++ vt+ vl+ + f  Lv++   ++n++
   CTQ28787.1 188 RVYDYSLNANNQGVTIDVLIERRFTNLVKKGSRFWNVS 225
                  57899**999999***********************86 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.31
  Herpes_HEPA  25 llpkafdlLvtndesksn 42 
                  + p+ + +L+tn+ ++++
   CTQ28787.1 559 IKPE-YRYLLTNNSVFWA 575
                  4555.***********97 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.011
  Herpes_HEPA  17 geqvtvrvllpkafdlLvtndesksnl 43 
                    +v v++ + k +++Lv n+ +++  
   CTQ28787.1 785 SDRVMVKLRISKRYQYLVRNNSVFWLA 811
                  345999**9****************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.22s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 6709.54
//
Query:       CTQ28788.1  [L=477]
Description: putative RNA AdoMet-dependent methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-47  160.6   0.0    4.9e-47  160.2   0.0    1.2  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
      3e-28   98.2   0.0    5.4e-28   97.3   0.0    1.5  1  Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransfer
    3.9e-12   46.0   0.0    7.8e-12   45.0   0.0    1.6  1  Methyltranf_PUA  RNA-binding PUA-like domain of methyltransfe
    4.4e-05   23.3   0.0    6.9e-05   22.7   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
     0.0009   19.4   0.0     0.0014   18.8   0.0    1.2  1  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.023   15.4   0.1       0.11   13.2   0.1    2.1  1  Methyltransf_25  Methyltransferase domain
      0.031   14.0   0.0      0.067   12.9   0.0    1.5  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.098   12.5   0.0        5.2    6.9   0.0    2.3  1  Methyltransf_23  Methyltransferase domain
       0.11   11.9   0.0       0.25   10.6   0.0    1.6  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.2   0.0   2.5e-50   4.9e-47       6     200 .]     115     309 ..     110     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 160.2 bits;  conditional E-value: 2.5e-50
                      --TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC..EEEEEEEE--CCGGGTTT-T CS
  Methyltr_RsmB-F   6 pqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaPCsgtgvirrdp 99 
                       ++ e+++D++aaPG+KTt ia+ m n+g ++A++ +++R+k +++n++r g+ n+ +++ D+r +   l  e+fD iLlDaPCsg gv+r+d 
       CTQ28788.1 115 NRQPERVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAALP-ETFDAILLDAPCSGEGVVRKDA 207
                      567799************************************************************99888.5********************* PP

                      CHHHH--HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH-TT.EEEESSBSTTSTTSSECEECTSEEE-TTTTSS- CS
  Methyltr_RsmB-F 100 dvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkred.velvetelsepkglklgeeagtlrllPhtenkd 192
                      d+  + +++    +a  q+el+++a++ l++gG+lvYsTC+++ eEn+ vie +L++ ++ ve+ ++    p  ++  + +g l+++P+ ++ +
       CTQ28788.1 208 DALKNWSPESNLDIAATQRELIDSAFHALRPGGTLVYSTCTLNREENQSVIEWLLSRYPQaVEILPLGELFPGAADALTAEGFLHVFPQIYDCE 301
                      **99***************************************************9987526888886665666666666679*********** PP

                      SEEEEEEE CS
  Methyltr_RsmB-F 193 gffiaklk 200
                      gff+a+l+
       CTQ28788.1 302 GFFVARLR 309
                      *****996 PP

>> Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransferase RsmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   2.7e-31   5.4e-28       1      90 []       8     105 ..       8     105 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 2.7e-31
                      --HHHHHHHHHHHGG..GHHHHHHHHH-----EEE--TTS..TTHHHHHHH..-SS--B-TT-TTEEES---.......TTSHHHHTTS-EE-- CS
  Methyltr_RsmF_N   1 LPeeFiekmkellge..eaeaflaaleeprkkglRvNtlKisveeleklse..efelepvpwceeGfyleeeerp....gkhplheaGlyYiQE 86 
                      +Pe+F+++m++ +++  ++++f+aa+++p ++++RvNtlKisv+++ +l +  +++l pvpwc+eGf++e+e++     g +++h +Gl+YiQE
       CTQ28788.1   8 FPEAFLAQMRAAMPAhlSFDDFIAACQRPLRRSIRVNTLKISVDDFLSLVApyGWQLAPVPWCAEGFWIEREDDDalplGSTAEHLSGLFYIQE 101
                      59*************999******************************98889******************98777899*************** PP

                      TTTH CS
  Methyltr_RsmF_N  87 pSam 90 
                      +S+m
       CTQ28788.1 102 ASSM 105
                      ***9 PP

>> Methyltranf_PUA  RNA-binding PUA-like domain of methyltransferase RsmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   3.9e-15   7.8e-12       1      50 []     419     468 ..     419     468 .. 0.96

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 3.9e-15
  Methyltranf_PUA   1 alrYlkGetielepdlkkGwvlVcydgyplGwgKlvggrlKNkyPkglRr 50 
                      a+++ +G+++   ++  + +++V+++g+plG +K+vg rlKN yP++l+r
       CTQ28788.1 419 AEEWYRGRDVYPQTAPGQDETIVTFQGVPLGLAKRVGSRLKNSYPRELVR 468
                      6899**********9999*****************************985 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.5e-08   6.9e-05       4     118 ..     118     253 ..     115     272 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.5e-08
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeq..gdieeleklledekfDlilsn.............e 82 
                        rv+D++++ G +t ++a ++g  + +   ++s+  +++  +n ++ g++nv + +  g ++ +   l  e+fD il +             +
       CTQ28788.1 118 PERVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHfdGRVFGAA--LP-ETFDAILLDapcsgegvvrkdaD 208
                      579***************************************************999554444433..44.89*******55555555555551 PP

  Methyltransf_31  83 vl..........naladpdkileeiervlkpggilliedprllael 118
                                  +  a + + + +++ +l+pgg l+ +++ l +e 
       CTQ28788.1 209 -AlknwspesnlDIAATQRELIDSAFHALRPGGTLVYSTCTLNREE 253
                      .0455555555477777778888*****************944443 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     7e-07    0.0014      23     150 ..     119     264 ..      95     273 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7e-07
                 -EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHHTTEEEECS-CCCSSHHHHHCHCHHH........SSEEEEEE--S-SS-CH..HHHHHHHH. CS
        FtsJ  23 ktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse........rkvdlvvsDgapdvsgv..hdldeylq. 110
                 ++v+D++aaPG+ +  ++ r+g++g ++a         ++v++++++i +    +  ++++++        + +d ++ D   + +gv  +d d++++ 
  CTQ28788.1 119 ERVMDVAAAPGSKTTQIAARMGNAGGILANEFSA----SRVKVLHANISRCGISNVALTHFDGrvfgaalpETFDAILLDAPCSGEGVvrKDADALKNw 213
                 56*******************9867666666555....89999*99999999999999999889999999999*******8764444433566666667 PP

                 ............CCCCHHHHCCHCCCCECCCEEEECCCH..CCCHHHHHHH.HHC CS
        FtsJ 111 ............sqLllaalelalkllkpggtfvlkifr..geeteallkq.lkk 150
                              +L+++a++     l+pggt+v  +++  +ee +++++  l++
  CTQ28788.1 214 spesnldiaatqRELIDSAFH----ALRPGGTLVYSTCTlnREENQSVIEWlLSR 264
                 777664443222355555555....5********999988666666888774544 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   5.6e-05      0.11       1      70 [.     121     193 ..     121     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.6e-05
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBS.SSTTTEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl.nvefvqgdaedlp.fedgsfDlvvs 70 
                      v+d+++ +G  t ++a+r+g ++ +++ ++s++ ++  ++++++ g+ nv + + d + +     ++fD++++
       CTQ28788.1 121 VMDVAAAPGSKTTQIAARMGnAGGILANEFSASRVKVLHANISRCGIsNVALTHFDGRVFGaALPETFDAILL 193
                      89****************9559********************9999999**9999999986346679**9987 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.4e-05     0.067      73     150 ..     117     195 ..      98     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.4e-05
                 TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES-GGG.TTGGG-SEEEEEESS CS
        PCMT  73 kgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDGrk.GyeekaPYdaihvga 150
                 + +rv++v +  G +t  +a  +g+ g +++ e +++ v+  ++n+ + +++nv++++ DGr  G +    +dai++ a
  CTQ28788.1 117 QPERVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRVfGAALPETFDAILLDA 195
                 5689*********************************************************964777778899998766 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0026       5.2      99     135 ..     226     262 ..     100     274 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0026
  Methyltransf_23  99 pellrqiatllkpgGylllseplaslkedrllldwly 135
                       el+++++  l+pgG l+ s+ + + +e++++ +wl+
       CTQ28788.1 226 RELIDSAFHALRPGGTLVYSTCTLNREENQSVIEWLL 262
                      3677777777788877777776666667777666665 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013      0.25      45     110 ..     115     180 ..     108     194 .. 0.86
   2 ?   -3.5   0.0       2.6   5.1e+03     136     150 ..     229     243 ..     224     252 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
                      S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT- CS
  Ubie_methyltran  45 vkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeL 110
                      ++++++v+Dva+  g  + +++  +g+ g +   +++++ +kv ++ + + g +n+ + + ++  +
       CTQ28788.1 115 NRQPERVMDVAAAPGSKTTQIAARMGNAGGILANEFSASRVKVLHANISRCGISNVALTHFDGRVF 180
                      68899***************************************************9988777655 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.6
                      HHHHHHHEEEEEEEE CS
  Ubie_methyltran 136 LkeayrvlkpGGrlv 150
                      + +a+  l+pGG+lv
       CTQ28788.1 229 IDSAFHALRPGGTLV 243
                      5689999*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3730.25
//
Query:       CTQ28789.1  [L=79]
Description: hypothetical protein CH1034_240286 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-43  145.2   0.1    5.7e-43  145.1   0.1    1.0  1  DUF1480   Protein of unknown function (DUF1480)


Domain annotation for each model (and alignments):
>> DUF1480  Protein of unknown function (DUF1480)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.1   0.1   3.2e-47   5.7e-43       1      79 []       1      78 [.       1      78 [. 0.99

  Alignments for each domain:
  == domain 1  score: 145.1 bits;  conditional E-value: 3.2e-47
     DUF1480  1 mtktklrigsfeiddaelsseedkgektvsiPCksdpdlClqldgWdeetsiPalldgkesllyrkkydkekdaWvlrl 79
                m+kt++rig+feiddael++e ++ge+t+siPCksdpdlC+qld+Wd++ts+Pa+l+g++s+lyrk+yd+++daWv+rl
  CTQ28789.1  1 MSKTNVRIGAFEIDDAELHGE-HQGERTLSIPCKSDPDLCMQLDAWDADTSVPAILNGEHSVLYRKHYDRQSDAWVMRL 78
                99*****************99.*******************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 637.40
//
Query:       CTQ28790.1  [L=63]
Description: hypothetical protein CH1034_240287 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-33  113.2   0.4      4e-33  113.1   0.4    1.0  1  DUF1482   Protein of unknown function (DUF1482)


Domain annotation for each model (and alignments):
>> DUF1482  Protein of unknown function (DUF1482)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.4   2.2e-37     4e-33       1      57 []       1      57 [.       1      57 [. 1.00

  Alignments for each domain:
  == domain 1  score: 113.1 bits;  conditional E-value: 2.2e-37
     DUF1482  1 mFaLVLtVcylnggcedlvvgvynteqeClaameeQkiRnggCyPiedvidgywiPA 57
                mFaLVL++cyl+ggced+vv+vy+ e +Cl ame+Q+iR+ggCyPied+idg+w+PA
  CTQ28790.1  1 MFALVLFICYLDGGCEDIVVDVYREETQCLVAMEDQRIRHGGCYPIEDFIDGFWQPA 57
                9*******************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 469.30
//
Query:       CTQ28791.1  [L=217]
Description: serine/threonine-specific protein phosphatase 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-13   50.2   0.3      9e-13   49.2   0.3    1.6  1  Metallophos    Calcineurin-like phosphoesterase
      0.004   17.4   0.0     0.0054   16.9   0.0    1.3  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.3     1e-16     9e-13       2     123 ..      12     102 ..      11     206 .. 0.60

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1e-16
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHHHHHHHHHTSEEEEEC-TTS.....CHHHHHHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellellaalvkypipvylllGNHe.....gfeeellnkygylgifsep 94 
                  +i+++gDlH     g+++ l++ l++l+ ++ +dl++ +GDl+drg+ + ++l ll+  +       +++GNHe     +     l++      + ++
   CTQ28791.1  12 NIWLMGDLH-----GCFALLMNRLRQLRFDPWADLLISVGDLIDRGPQSADCLGLLRCRWF-----RAVRGNHEqmaleA-----LES-----GDMRL 89 
                  69*******.....*****************************************999999.....9*******333321.....222.....22344 PP

                  HEHHHCEEETSEEEEEETTEEEEEEEESE CS
  Metallophos  95 wrsdaevfnnlplaslgsgslkvlllhGg 123
                  w+++              g    + ++G+
   CTQ28791.1  90 WQMN--------------G--GDWYVKGD 102
                  4433..............1..22222222 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.1e-07    0.0054       4      63 ..      14      96 ..      12     209 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.1e-07
  Metallophos_2  4 aiiSDlHsnldaleavlealke.vgvdaiihaGDl..eeeepevleellelapvlaVrGNnD....................e 63
                    ++ DlH+ +++l + l++l+    +d++i +GDl   + +   +  ll+ + ++aVrGN++                    +
     CTQ28791.1 14 WLMGDLHGCFALLMNRLRQLRFdPWADLLISVGDLidRGPQSADCLGLLRCRWFRAVRGNHEqmalealesgdmrlwqmnggD 96
                   6789******9999999988753447********955444444666677777**********777777776666666655431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1759.69
//
Query:       CTQ28792.1  [L=336]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-99  330.2   1.2    1.1e-98  330.0   1.2    1.0  1  DUF535    Protein of unknown function (DUF535)


Domain annotation for each model (and alignments):
>> DUF535  Protein of unknown function (DUF535)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.0   1.2  5.9e-103   1.1e-98       3     280 ..      50     327 ..      48     328 .. 0.99

  Alignments for each domain:
  == domain 1  score: 330.0 bits;  conditional E-value: 5.9e-103
      DUF535   3 wkelrrrlkfllrsllhprqtkkllqflnqspllkellkkqprllekllrpYlsknlsakqrleaivdhytfleelltaellqellekkgltlaelegk 101
                 w+++++r+kfllr++l++++t+++l++l++ + +++ll++q +l+ k++r+Yl ++l+a+qr+ a+++hy+++++l +++l +++ + +++ l++l+gk
  CTQ28792.1  50 WRQKNYRFKFLLRTALFYNATRAMLEALSARDDFNQLLAAQATLPGKVHRQYLTRDLNAWQRAVAVINHYRYIDTLRGSRLAHAMTAVSEVPLLTLNGK 148
                 9************************************************************************************************** PP

      DUF535 102 eeeeleleLsinagqrkEGelsLelrdedkqllysltFtllkregektllIGalQGpkkenakelikqlTKachGlrPkrLllealkllaealgveqil 200
                 e+ +++l+ s+  + ++EGe++L+lrd+d++ll+s+tF++++++  ++l+IG+lQGp+++ ++e+ikq+T+ac+Gl+PkrLlle +++la++ ++ +i+
  CTQ28792.1 149 EDRRFTLYASSAGKAEREGETTLWLRDSDHTLLASATFSVTRDHDAWQLVIGGLQGPRRHVSHEVIKQATRACYGLFPKRLLLEFIWQLAARSQIAAIY 247
                 *************************************************************************************************** PP

      DUF535 201 avsnkghvyrqlryrlkkkkklvadYdefWeelgGeakdkeyyeLPleeerkdleeiaskKRseYrkRyalldeleeqia 280
                 +vs++ghv+r+lryrl+k ++++a+YdefW++++G++++++ ++LPl+ erk+le+iaskKR+eYr+R++lld+l+eq+a
  CTQ28792.1 248 GVSDNGHVFRALRYRLSKGRHFHASYDEFWQSIDGQPESPWRWRLPLCLERKSLESIASKKRAEYRRRFQLLDQLTEQVA 327
                 *****************************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2547.20
//
Query:       CTQ28793.1  [L=112]
Description: hypothetical protein CH1034_240290 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-44  150.7   0.0    1.2e-44  150.5   0.0    1.1  1  DUF2511   Protein of unknown function (DUF2511)


Domain annotation for each model (and alignments):
>> DUF2511  Protein of unknown function (DUF2511)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.0   6.7e-49   1.2e-44       1      87 []      25     112 .]      25     112 .] 0.99

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 6.7e-49
     DUF2511   1 tvskleyGe.rWafareevaLdCragnalyainpstlvqYpLndiaeeqaksGkvsaqpidvillddpkdpgqkmslePfveralqLC 87 
                 tvs++e+G+  Waf+reev+L+Cr+gnalyainpstlvqYpLn++ae+q+k Gk++aqpi+vi++ddp++pgqkmsl+Pf+era++LC
  CTQ28793.1  25 TVSRFEVGKeSWAFNREEVMLTCRPGNALYAINPSTLVQYPLNEVAEQQVKAGKTTAQPISVIQIDDPQHPGQKMSLAPFIERAKKLC 112
                 7*******989***************************************************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 957.11
//
Query:       CTQ28794.1  [L=289]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-19   70.4  10.2    1.4e-19   70.4  10.2    3.5  4  CopD      Copper resistance protein D


Domain annotation for each model (and alignments):
>> CopD  Copper resistance protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       0.4   7.2e+03      43      53 ..      14      24 ..       2      32 .. 0.44
   2 ?   -2.1   6.4      0.28   5.1e+03      19      60 ..      63     110 ..      38     119 .. 0.69
   3 ?    2.0   1.5     0.015   2.7e+02      10      39 ..     120     149 ..     112     183 .. 0.68
   4 !   70.4  10.2   7.9e-24   1.4e-19       3     104 ..     186     282 ..     184     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.4
        CopD 43 lllaKlalllv 53
                 + ++la++ v
  CTQ28794.1 14 FISLMLAFGCV 24
                33333333333 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.28
        CopD  19 lvtGvvnallrvg......lagllttayGrlllaKlalllvllalaal 60 
                 l+ G +++   +       +++ ++t+ G +++  ++l  ++la+ ++
  CTQ28794.1  63 LLQGGMMGEGWTDvwrpavWQAVAGTRFGGVWIWQILLAWIALAVVWI 110
                 3445555533333334445899999****9999999999999998886 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.015
        CopD  10 lalaavavvlvtGvvnallrvglaglltta 39 
                 +al+a  ++l  Gv+ a+++ gl+g l+ +
  CTQ28794.1 120 VALLAAQLLLSAGVGHAAMHDGLTGVLQRT 149
                 7899999999*******9996665555522 PP

  == domain 4  score: 70.4 bits;  conditional E-value: 7.9e-24
        CopD   3 alrrFsrlalaavavvlvtGvvnallrvglagllt.tayGrlllaKlalllvllalaalnrfrlvprleaatgaggqalrhrlrrsaalelvlalvvll 100
                 ++ rFsr++++ava ++++G++nall+   +gl++ +++Gr+ll+K+al++ ++++a++nr++lvpr+    ++g+qa    + r+ ++e++l++++ll
  CTQ28794.1 186 TMARFSRYGHLAVAGTIASGALNALLI--QGGLIGaSPWGRMLLIKCALVAGMVVIALVNRYVLVPRM---SASGSQAES-LILRTTQAEIGLGALALL 278
                 589*********************999..6677777********************************...456666666.*****************9 PP

        CopD 101 laaa 104
                 ++++
  CTQ28794.1 279 AVSL 282
                 9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2556.22
//
Query:       CTQ28795.1  [L=124]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-25   89.8   0.7    2.2e-25   89.5   0.7    1.1  1  CopC      CopC domain
      0.002   18.5   0.0     0.0028   18.1   0.0    1.4  1  MG2       MG2 domain
     0.0084   16.8   0.1      0.011   16.4   0.1    1.2  1  Big_5     Bacterial Ig-like domain
  ------ inclusion threshold ------
      0.039   13.8   0.1      0.095   12.6   0.1    1.7  1  FlgD_ig   FlgD Ig-like domain


Domain annotation for each model (and alignments):
>> CopC  CopC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.7     5e-29   2.2e-25       1      92 []      27     123 ..      27     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 5e-29
        CopC   1 HaalvsstPaagatvaaapeevtLtFsepvel..skvkvtdpdgke....evetvdaktveaelkvplp.elaaGtYtVewrvvsaDGHpvsGsfsFtv 92 
                 Ha+l+++ P+aga+++a+p+++tL+Fse +e+  s v+vt+p++++    +   ++++++ ae++ pl+ +l++G+YtV+w+vvs DGH+++G+++F+v
  CTQ28795.1  27 HAHLQQQIPTAGAQLSASPQTLTLSFSEGIEPafSGVTVTGPQQHAvatgK--LTRSADNPAEVTLPLAeALPPGEYTVAWHVVSVDGHKTKGQYTFSV 123
                 9******************************************98877542..33444455566666667888************************98 PP

>> MG2  MG2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   6.2e-07    0.0028      36      95 ..      61     122 ..      25     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 6.2e-07
                 EEEEEE-TTSSEEEEEEEEE-CTTEEEEEEE--TT--SEEEEEEE..EECSTTT-EEEEEEE CS
         MG2  36 lkltirdpdgkevkelplatdetggaesefalpeaaklGeysvel..sadsaeeslssgsfr 95 
                   +t++ p++  v + +l+ ++++ ae++++l ea + Gey+v       +  ++ ++++f+
  CTQ28795.1  61 SGVTVTGPQQHAVATGKLTRSADNPAEVTLPLAEALPPGEYTVAWhvVSVDGHKTKGQYTFS 122
                 5689***************************************9954333444444555555 PP

>> Big_5  Bacterial Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   2.4e-06     0.011       9      91 ..      32     111 ..      27     123 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.4e-06
       Big_5   9 stsPadgatgvavnaeitvtFseavdastvtaatvialsdsettavtgs..ydasg.ktvtitpsaeLaanttYtvtitagikDla 91 
                 +  P++ga+  a  +++t++Fse ++++ +  + v+   +++ ++ tg+   +a++  +vt+ ++++L +  +Ytv     ++ ++
  CTQ28795.1  32 QQIPTAGAQLSASPQTLTLSFSEGIEPAFSGVT-VT--GPQQHAVATGKltRSADNpAEVTLPLAEAL-PPGEYTVAW--HVVSVD 111
                 668999*99999999************997544.44..566666666668777888899*******99.666788865..455555 PP

>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.1e-05     0.095      42      74 ..      93     124 .]      61     124 .] 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
                 EEESSSEEEEEEE-SB-TTS-B--SEEEEEEEE CS
     FlgD_ig  42 lgaqsaGvvsftWdGtdndGnkladGaYtvkvt 74 
                 ++a + G+++++W+    dG+   +G+Yt++v+
  CTQ28795.1  93 AEALPPGEYTVAWHVVSVDGH-KTKGQYTFSVK 124
                 568899**************9.679******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 979.11
//
Query:       CTQ28796.1  [L=76]
Description: DNA polymerase III, theta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-37  126.7   0.1    2.1e-37  126.6   0.1    1.0  1  DNA_pol3_theta  DNA polymerase III, theta subunit
  ------ inclusion threshold ------
      0.014   14.4   0.1      0.014   14.4   0.1    1.1  1  MMM1            Maintenance of mitochondrial morphology prote


Domain annotation for each model (and alignments):
>> DNA_pol3_theta  DNA polymerase III, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   0.1   2.3e-41   2.1e-37       2      69 ..       3      70 ..       2      71 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.6 bits;  conditional E-value: 2.3e-41
  DNA_pol3_theta  2 lNLaelskeemdkinvdlaasgvafkERynmPVvaeqvereqPeaLreYFreRlayyReeskklsrlp 69
                     NLa++s++emdk+nvdlaa+gvafkERynmPVva+ vereqP++Lr++FreRl+++R +s +lsrlp
      CTQ28796.1  3 RNLAKISQDEMDKVNVDLAAAGVAFKERYNMPVVADLVEREQPAHLRDWFRERLIAHRLASVSLSRLP 70
                    5*****************************************************************98 PP

>> MMM1  Maintenance of mitochondrial morphology protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.6e-06     0.014     290     323 ..      32      69 ..      15      76 .] 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-06
                 THHHHHHHHH....HHHHHHHHHHHBTT-EEEEE---- CS
        MMM1 290 dvPkiaslve....arlkkWfeercvePrfqvvklPsl 323
                 ++P +a+lve    a+l++Wf er +  r+  v+l  l
  CTQ28796.1  32 NMPVVADLVEreqpAHLRDWFRERLIAHRLASVSLSRL 69 
                 89*******9444447*****************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 629.27
//
Query:       CTQ28797.1  [L=219]
Description: DNA exonuclease X [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-14   52.8   0.0    9.4e-13   49.0   0.0    2.1  1  RNase_T   Exonuclease


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   5.3e-17   9.4e-13       2     165 .]       4     147 ..       4     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 5.3e-17
                 EEEEEESSSTTCTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETTTCEEEESSH CS
     RNase_T   2 viDlEttgldakekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahnaafdvgflr 100
                 viD+Et +l+ +    i+eia + i+ g+  i ++++ +v+p+++  +++++++++ it em+ ++p ++e+++     +     +vahna+fd  +l 
  CTQ28797.1   4 VIDTETCSLQGG----IVEIASVDIVDGQ--ITNPMSHLVRPDRP--ISPQAMAIHRITEEMVADKPWIEEIIPH----YHGSPWYVAHNASFDRRVLP 90 
                 8*********96....*************..9999**********..***********************99993....3335689****999865555 PP

                 HHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHC..HHHHHHHHHTTCHSSSS....TSSHHHHHHHHHHHH CS
     RNase_T 101 aadkrilkkevpkrnqfldtlildkatlkelar..tsldklaeklgleedgr....aHrAldDaeataklf 165
                  +             + ++t++l+++  ++ ++  ++l k ++   l  ++     +HrAl+D+  ta+l+
  CTQ28797.1  91 EMH-----------GEWICTMKLARRLWPGIKYsnMGLYKSRK---LNVTTPpglhHHRALYDCYITAALL 147
                 444...........45677888888888887774433333333...22222223578***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1620.05
//
Query:       CTQ28798.1  [L=675]
Description: protease II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.7e-104  349.9   1.7   2.2e-104  349.5   1.7    1.1  1  Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propel
    6.4e-67  225.1   0.1    9.7e-67  224.5   0.1    1.3  1  Peptidase_S9    Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Peptidase_S9_N  Prolyl oligopeptidase, N-terminal beta-propeller domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.5   1.7  2.5e-108  2.2e-104      12     414 .]       2     393 ..       1     393 [. 0.98

  Alignments for each domain:
  == domain 1  score: 349.5 bits;  conditional E-value: 2.5e-108
                     EETTEEEE-TTGGGGSTTSHHHH..HHHHHHHHHHHHHHCTST.CHHHHHHHHHHHT-S-EE---EEETTEEEEEEE-SS-SS-EEEEECSTS-T CS
  Peptidase_S9_N  12 elhgdkvsDpYrWLeDddspetk..ayleaenkyteevlaqlkelrekikeeitklikeddisapfrkgkyyyysrneggknqsvlyrqdalske 104
                     +lhgd+++D+Y+WL+Dd++  ++  +yl+aen+y ++v+++   l+e++ +ei+++i+++++sap+ k+++ y++  e g+++++++rq+ l++e
      CTQ28798.1   2 TLHGDTRIDNYYWLRDDERARPDvlEYLHAENAYGKQVMDSQLSLQERLLKEIIDRIPQREVSAPYSKNGFRYRQVYEPGCEYAIYQRQSVLKEE 96 
                     68***************98666666**************99999**********************************************9999* PP

                     TS-EEEEE-GGGGSTTS-.EEEEEEEE-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEESS-SSS-TSTS CS
  Peptidase_S9_N 105 geeeevlLDpNtlsedgtfvalgefavsedgkllAyslsksGsdwytirvkdietgedlpdeledvkfsgivWaadekgffYtrydkedersdtd 199
                     ++e+e+lLD N+ +++ +f+ lg++ + + ++l+A ++++ ++++y +r+ d+++ge++p+ le+v++  ++W +d++ + Y+r+++ +  ++  
      CTQ28798.1  97 WDEWEILLDANQRAAKSEFYTLGGLGIAPNNQLMAVAEDYLSRRQYGLRFCDLSNGEWYPEILENVTSG-FAWSNDSRFVWYVRKHPTTLLPY-- 188
                     *******************************************************************99.***********************.. PP

                     B-S-BEEEEEETTS-GGG-EEEES-TTGTTBEEEEEE-TTSSEEEEEEESSSS--EEEEEEGGGTSS--EEEEESSSSS-EEEEEEETTEEEEEE CS
  Peptidase_S9_N 200 tnlnqkvyrhkLGtaqseDelvfeeeeepkwllgaersedgkylfissasgtdtnelyvldlekeskkvlklvdnrfdaeysvehnegdrflilt 294
                          +v+rh++Gt++++D lv+e e+++++++++++++++++++i+ +s+t t+e+ +l++e ++++++ ++++r d+eys++h  ++ f++++
      CTQ28798.1 189 -----QVWRHTVGTPAQSDALVYE-EKDETFYVSVHKTTSQQFVVIYLSSAT-TSEVLLLNAELPDAEPVCFLPRRKDHEYSLDHY-QHAFYLRS 275
                     .....*******************.***************************.*********************************.8******* PP

                     -TT-TT-EEEEEETTSSSGGGEEEEE--.SSCEEEEEEECTTEEEEEEEETTEEEEEEEETTTS-.EEEEEB-SSSSEEEEEE--TT-SEEEEEE CS
  Peptidase_S9_N 295 ndgapnfrlvsvdlndpspsewkelvperekvvleeitvfknylvvsyrkdvlsrvqvvdlkngkvllfevplpgvgsvssasgekedselfysf 389
                     n++++nf l+++ l+d++  +w++l+p r++v+le++t+f+++lvv++r+++l+++++++ k+++v+ ++++ p+++++ +++ e e+s+l+y +
      CTQ28798.1 276 NREGKNFGLYRTVLRDEE--QWTTLIPPRHDVMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVVGIAFDDPAYVTWLAYNPEPETSRLRYGY 368
                     *****************9..*************************************************************************** PP

                     EETTCEEEEEEEETTTTCEEEEEEE CS
  Peptidase_S9_N 390 sSfltPstiykldlatgelellker 414
                     sS++tP+t+++ld++tge++++k++
      CTQ28798.1 369 SSMTTPDTLFELDMDTGERRVIKQQ 393
                     **********************986 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.5   0.1   1.1e-70   9.7e-67       3     208 ..     452     664 ..     450     668 .. 0.97

  Alignments for each domain:
  == domain 1  score: 224.5 bits;  conditional E-value: 1.1e-70
                   --.HHHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE- CS
  Peptidase_S9   3 fs.selqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpv 98 
                   fs s+l+ll +rG+v+++a++rG+g+ G++++++gk   ++n+f+D++++++al ++gy d++ ++ +GgS+GG+l+g+a+n+rp+lF++++a+vp+
    CTQ28798.1 452 FSaSRLSLL-NRGFVYAIAHVRGGGELGQQWYEDGKFLCKKNTFNDYLDVCDALLAQGYGDPRLCYGMGGSAGGMLMGVAVNERPELFHGVIAQVPF 547
                   787899999.*************************************************************************************** PP

                   --CCCHHCSTTS.THH.HCCCC--TTTCHHHHHHHHHH-CGGG--..---EEEEEEETT-SSS-THHHHHHHHHHH..--S-S.EEEEEETTS-SST CS
  Peptidase_S9  99 vdvlrydsdtdl.lte.eymewgnpeeneegykelspyspldnvk..aypplLlihGlaDdrvppaealklvaaLq..kkgkn.vlllifpdegHgv 188
                   vdv+++++d+++ lt+ e++ewgnp ++e++y+++++ysp+d v+  ayp++L+++Gl+D++v+++e++k+va+L+  k+++n +ll +++d+gHg+
    CTQ28798.1 548 VDVVTTMLDETIpLTTgEFEEWGNP-QDETYYHYMKSYSPYDGVRaqAYPHMLVTTGLHDSQVQYWEPAKWVAKLRelKTDDNlLLLCTDMDSGHGG 643
                   *************9999********.99999***********************************************999999************* PP

                   TSSHHHH.HHHHHHHHHHHHH CS
  Peptidase_S9 189 gkprakv.eelarllaFlkea 208
                   +++r k  e +a ++aF+   
    CTQ28798.1 644 KSGRFKSyEGVALEYAFFIAL 664
                   *****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4750.92
//
Query:       CTQ28799.1  [L=219]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-50  169.1   1.8    6.8e-50  169.1   1.8    1.4  2  DUF533    Protein of unknown function (DUF533)
  ------ inclusion threshold ------
      0.012   15.5   1.7       0.02   14.9   0.9    1.7  2  TerB      Tellurite resistance protein TerB
          2    9.0   6.5         18    5.9   5.8    2.6  2  YtxH      YtxH-like protein


Domain annotation for each model (and alignments):
>> DUF533  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.72   4.3e+03     156     168 ..       3      15 ..       2      17 .. 0.86
   2 !  169.1   1.8   1.1e-53   6.8e-50       6     178 ..      32     209 ..      27     210 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.72
      DUF533 156 aYLdeLaqaLgLd 168
                 ++L++L++ LgL+
  CTQ28799.1   3 NWLHQLQSLLGLQ 15 
                 69******99997 PP

  == domain 2  score: 169.1 bits;  conditional E-value: 1.1e-53
      DUF533   6 aaaggllglllGskkgr....klgkkalklGglAalGglAykayqnwqanqqeaapqsapkf.qeeeeekaelllrAmiaAAkADGhideeErqrIlqe 99 
                 +a ggl+gll++sk++r    k+g++al +Gg A+ G++ +++yq+  + q+ +a++++ +  ++e + ++ +l++A++ AAk+DGhid++Er++I+++
  CTQ28799.1  32 GAIGGLAGLLVASKSSRkllaKYGTSALLAGGGAVAGTVLWNKYQQKMRAQNTSAQAPETAAaPAEVDPRSVRLITALVFAAKSDGHIDDHERANIETQ 130
                 689************88888899**********************655444444444433332469********************************* PP

      DUF533 100 leelgldaeekalledeLrkPldlqelaaavknpelaaevYlaSllaidedsaaEraYLdeLaqaLgLdpelvaeleaq 178
                 l+++++d +++ l++++L++Pld+q+la+ + +p++a e+Y +S+++id d+++Er+YL++L +aL L+++++a++e++
  CTQ28799.1 131 LRAANIDVQARVLIDQALAQPLDPQRLAEGIIDPQEALEIYYVSCAVIDIDHFMERSYLNALGDALALPKDVRADIEQD 209
                 *****************************************************************************97 PP

>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.9   3.3e-06      0.02       7      60 ..      81     134 ..      75     153 .. 0.66
   2 ?   -1.3   0.0      0.32   1.9e+03      27      61 ..     167     197 ..     142     215 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.3e-06
        TerB   7 aeelaaaagaektdaake.afalalaallaevakaDgqvsesErqafrellksrf 60 
                 a++++a+a+++++++a+    ++ l++ l+  ak+Dg ++++Er+ +++ l ++ 
  CTQ28799.1  81 AQNTSAQAPETAAAPAEVdPRSVRLITALVFAAKSDGHIDDHERANIETQL-RAA 134
                 455555555555555533566777888888888888888888888887777.333 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.32
        TerB  27 alalaallaevakaDgqvsesErqafrellksrfg 61 
                 al++  +++ v+ +D+ + +s  +a+   l    +
  CTQ28799.1 167 ALEIYYVSCAVIDIDHFMERSYLNALGDAL----A 197
                 555566666666666666655555555544....4 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.8    0.0031        18       6      29 ..      30      53 ..      26      97 .. 0.85
   2 ?    0.9   0.0      0.12     7e+02      52      70 ..     191     217 ..     156     219 .] 0.77

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0031
        YtxH  6 iGaavGaaaglLlAPksGketRkd 29
                + +a+G +aglL A ks +++ ++
  CTQ28799.1 30 LPGAIGGLAGLLVASKSSRKLLAK 53
                5589*************9998665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.12
        YtxH  52 a........kekaedlkekvkekadel 70 
                 a        k+  +d+ ++++++ + l
  CTQ28799.1 191 AlgdalalpKDVRADIEQDIQSQKQAL 217
                 144555677999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1586.07
//
Query:       CTQ28800.1  [L=115]
Description: conserved hypothetical protein regulated by LexA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-32  109.7   3.2    5.6e-32  109.4   3.2    1.1  1  YebG             YebG protein
  ------ inclusion threshold ------
        0.1   12.9   0.7       0.19   12.1   0.7    1.4  1  Thyroglob_assoc  Thyroglobulin_1 repeat associated disordered


Domain annotation for each model (and alignments):
>> YebG  YebG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   3.2   6.2e-36   5.6e-32       1      73 [.       1      73 [.       1      74 [. 0.99

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 6.2e-36
                XXXXXXXXXXXXXXX..XXXHHHHHHHHHHHHHHHHHHHHHHHHHSTT--HHHHHHHHHHHHTTHHHHHHHHH CS
        YebG  1 MaVeikYvveRdGeekmtftsKkeADayDkmLdladeLaelLeqselgldeeqaEelallLaenkeelakalk 73
                MaVeikYvv+R+Geekm+f+sKkeADayDkmLdla+ L+++L +s+l++d+ q++++a++Lae+ke+l+++l+
  CTQ28800.1  1 MAVEIKYVVIREGEEKMSFASKKEADAYDKMLDLAEVLNDWLVASPLEMDDVQRDTMAMWLAERKEALQHILR 73
                ***********************************************************************97 PP

>> Thyroglob_assoc  Thyroglobulin_1 repeat associated disordered domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.7   2.1e-05      0.19       7      35 ..      76     103 ..      74     108 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.1e-05
  Thyroglob_assoc   7 KppqregsGKdDgskptptmetqPqvdee 35 
                      ++p++e + + D+s+p  t et P +d++
       CTQ28800.1  76 RLPEQETPAQ-DASAPSATAETSPAGDDA 103
                      799***9999.6*************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 898.03
//
Query:       CTQ28801.1  [L=392]
Description: phosphoribosylglycinamide formyltransferase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-56  190.6   0.0    2.6e-56  189.9   0.0    1.3  1  ATP-grasp        ATP-grasp domain
    1.2e-06   28.2   0.0    9.5e-06   25.3   0.0    2.3  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    5.4e-06   26.1   0.0    1.2e-05   25.0   0.0    1.5  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    2.8e-05   24.2   0.0    6.1e-05   23.1   0.0    1.6  1  ATP-grasp_3      ATP-grasp domain
    0.00066   19.2   0.0     0.0012   18.4   0.0    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0021   17.5   0.0     0.0039   16.6   0.0    1.4  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.003   17.7   1.1      0.003   17.7   1.1    1.9  2  LAL_C2           L-amino acid ligase C-terminal domain 2
  ------ inclusion threshold ------
      0.016   15.0   0.0      0.033   13.9   0.0    1.5  1  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
       0.11   12.4   0.0       0.24   11.3   0.0    1.6  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.9   0.0   1.3e-59   2.6e-56       2     171 .]     123     295 ..     122     295 .. 0.97

  Alignments for each domain:
  == domain 1  score: 189.9 bits;  conditional E-value: 1.3e-59
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC......GTTCEEEEE----SEEEEEEEEEETTC-EEE-- CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal......keekvivEefvpfekElsvlvvrsaeGetafyp 94 
                 e+l+lp++r+ +++s+e +++a++e+glp++vK ++++++GkGqs++rs+++l++a++++      ++++vivE +v+f++E+++l+v +++G ++f++
  CTQ28801.1 123 EELQLPTSRYRFADSEEGFRAAVTEIGLPCIVK-PVMSSSGKGQSFIRSADQLSEAWRYAqqggraGAGRVIVEGVVNFDFEITLLTVSAVDG-VHFCA 219
                 689******************************.**************************99999999*************************.***** PP

                 EEEEEEETTEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCT.EEEEEEESS--GGGGGHHHHB CS
   ATP-grasp  95 vvetvqedgilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledge.llvnElapRpHnsGhvtldaa 171
                 +v++ qedg++r+s++p+++s+ a+++a++ia+++v +Lgg+G+f+vElFv+  g+ ++++E++pRpH++G+vtl ++
  CTQ28801.1 220 PVGHRQEDGDYRESWQPQQMSDLALERAQAIAREVVLALGGYGLFGVELFVC--GDeVIFSEVSPRPHDTGMVTLISQ 295
                 ****************************************************..555******************875 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   4.8e-09   9.5e-06      22     176 ..     135     284 ..     113     295 .. 0.76
   2 ?   -0.7   0.0      0.43   8.5e+02      28      78 ..     341     391 ..     327     392 .] 0.76

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 4.8e-09
                      H-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-S....CEEEEE--ESEEEEEEEEE.TSSCEEEEEEEEE-SSSS CS
  Dala_Dala_lig_C  22 eekkellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkyde....kvlvEeaiegreievavlg.neklevsevgeivvkkgf 110
                       +++e +++ ++e+g+p++VKp+ + S  G s ++s+++l+ea + a +  +    +v+vE +++  ++e+++l  +    v+ +  +  +++ 
       CTQ28801.1 135 ADSEEGFRAAVTEIGLPCIVKPVMSSSGKGQSFIRSADQLSEAWRYAQQGGRagagRVIVEGVVNF-DFEITLLTvSAVDGVHFCAPVGHRQED 227
                      4556788999*************************************9975433338****98875.678888772111223333333333333 PP

                      S-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS- CS
  Dala_Dala_lig_C 111 ydyeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlP 176
                       dy + +         p ++++   e+ q++a ++  al++ Gl  v +f+   +e++++Ev + P
       CTQ28801.1 228 GDYRESW--------QPQQMSDLALERAQAIAREVVLALGGYGLFGVELFVC-GDEVIFSEVSPRP 284
                      4566655........4788888888999999999999999999999999998.6788889998888 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.43
                      HHHHHHHC-SSEEEEESSSST.TTTEEEESSGGGHHHHHHHHHTT-SCEEEE CS
  Dala_Dala_lig_C  28 lekveeelgypvfVKpareGS.SvGvskveseeelkeaieeafkydekvlvE 78 
                      +++v + l++ +f Kp   G   +Gv+ +  ++ ++ea+++a    + v+vE
       CTQ28801.1 341 QSAVGAGLQLRLFGKPEIDGTrRLGVTLAV-ADSVEEAVARAKAAAAAVIVE 391
                      556667788888888888887347887654.577999999999999999999 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   5.8e-09   1.2e-05      11      86 ..     124     195 ..     114     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 5.8e-09
                  HTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEE CS
  CPSase_L_D2  11 kinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlve 86 
                  +++ p   s  + ++++e   a++ eig P+i+k+ ++  GkG  ++r+ ++l+e+ + a++  +   g  +v ve
   CTQ28801.1 124 ELQLP--TSRYRFADSEEGFRAAVTEIGLPCIVKPVMSSSGKGQSFIRSADQLSEAWRYAQQGGR--AGAGRVIVE 195
                  44444..44444458888889999***********************************999886..466677776 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.1e-08   6.1e-05      10     159 ..     119     285 ..     113     287 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.1e-08
                  HHTTT.S---.....-EESS--........SSSEEEEESS-------B--SS--TTE................EEEE---SEEEEEEEEE.SSSEEEE CS
  ATP-grasp_3  10 kLkeagvkvP.tkleaeeleee........ekklvvKprdGaggesvrvveekeeaeaaieeve.........lvqefieGkplSvsllsdgekvlvl 89 
                  +L ++++++P ++++ +  ee           +++vKp+ ++ g++ ++++  +++ +a  + +         ++ e +   ++ ++ll   + v  +
   CTQ28801.1 119 RLAAEELQLPtSRYRFADSEEGfraavteiGLPCIVKPVMSSSGKGQSFIRSADQLSEAWRYAQqggragagrVIVEGVVNFDFEITLLT-VSAVDGV 215
                  566667777763333333333344445445999************************99999999*****99977777777888888887.7789999 PP

                  EEEEEEEET....TEEEEEEES----H..HHHHHHHHHHHHTTSTT--EEEEEEEEESS.SEEEEEEESS-- CS
  ATP-grasp_3  90 avnrqliekaekefvyaGnvtpietel..keevvelaeevvekleglaGyvGvDlvlkdeepyviEvNPRlt 159
                   ++  +  +++++  y+ +  p ++++   e+++++a+evv +l g  G++Gv+l +  +e ++ Ev PR+ 
   CTQ28801.1 216 HFCAPVG-HRQEDGDYRESWQPQQMSDlaLERAQAIAREVVLAL-GGYGLFGVELFVCGDEVIFSEVSPRPH 285
                  9998876.55677999999999999887799*************.**********99999**********85 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     6e-07    0.0012       6      70 ..      19      81 ..      16      99 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6e-07
                TTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE CS
   Epimerase  6 atGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavih 70
                ++G +G+ ++ ++++ g+e i++dr+++a + +  +  + + ++++++++l++l+++e+pd+++ 
  CTQ28801.1 19 GSGELGKEVAIECQRLGIETIAVDRYPDAPAMQVAH--RAHVINMLHGESLRALIEQEKPDYIVP 81
                57899*********************9999888777..999**********************86 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.9e-06    0.0039      36      73 ..      12      49 ..       5      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.9e-06
                  TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH CS
  2-Hacid_dh_C 36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkee 73
                    +v ++G G++G++va  ++ +g++ ia+dr++++ +
    CTQ28801.1 12 ATKVMLLGSGELGKEVAIECQRLGIETIAVDRYPDAPA 49
                  578999***************************99665 PP

>> LAL_C2  L-amino acid ligase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.5       8.6   1.7e+04      62      73 ..     243     254 ..     241     257 .. 0.68
   2 !   17.7   1.1   1.5e-06     0.003      44      75 ..     359     390 ..     355     391 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 8.6
      LAL_C2  62 aeaaaeeaaaei 73 
                 a+++a+++a+e+
  CTQ28801.1 243 ALERAQAIAREV 254
                 667777777766 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.5e-06
      LAL_C2  44 ssgdrlGyviatgdtaeeaeaaaeeaaaeiri 75 
                 +++ rlG  +a++d+ eea+a+a++aaa++ +
  CTQ28801.1 359 DGTRRLGVTLAVADSVEEAVARAKAAAAAVIV 390
                 7899************************9866 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.7e-05     0.033      11     105 ..     123     215 ..     117     232 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
                 HHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---.SEEEEEEEEECTTEE CS
      GARS_A  11 kkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelle.GeEvsllalvdgktv 105
                 ++ ++pt++y+  ++ e  ++ ++e + +  +vK++  ++gKg +  +s+++  +a +   +  + G    +v++E +++   E++ll+++  + v
  CTQ28801.1 123 EELQLPTSRYRFADSEEGFRAAVTEIGLPC-IVKPVMSSSGKGQSFIRSADQLSEAWRYAQQGGRAG--AGRVIVEGVVNfDFEITLLTVSAVDGV 215
                 57899*************************.*************99988887777777665544444..468999999984579999887544433 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012      0.24       1      68 [.      14      84 ..      14     103 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHH...HHHHHHHHHCCTTTTSS-HHHHCCCHHCEE CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealeka...lekieksleklvekgklkeeeveaalaris 68
                kv  +G+G +G+++a  + + g+e+  vd+ ++a +     ++++ + l+    +  +++e+ + ++ +i+
  CTQ28801.1 14 KVMLLGSGELGKEVAIECQRLGIETIAVDRYPDAPAMQvahRAHVINMLHGESLRALIEQEKPDYIVPEIE 84
                58899*************************77766554001444455666667777777888877777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2868.28
//
Query:       CTQ28802.1  [L=213]
Description: multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-88  295.7   0.9    1.4e-88  295.5   0.9    1.0  1  Aldolase   KDPG and KHG aldolase
    0.00096   18.8   0.3     0.0014   18.2   0.3    1.2  1  HMGL-like  HMGL-like
  ------ inclusion threshold ------
      0.094   11.7   0.7       0.14   11.2   0.7    1.2  1  IMPDH      IMP dehydrogenase / GMP reductase domain


Domain annotation for each model (and alignments):
>> Aldolase  KDPG and KHG aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.5   0.9   2.3e-92   1.4e-88       2     195 ..       9     203 ..       8     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 295.5 bits;  conditional E-value: 2.3e-92
                 HHHHHCHSEEEEE--SSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHH-TTSEEEEES--SHHHHHHHHHCT-SEEEESS--HHHHHHHH.H CS
    Aldolase   2 esilkeakvvpvivikdkedalplaeaLvagGlrvlevtlrteaaldairvlrkerpdllvgaGtvlnaeqlaeakeaGaqfvvsPGltadllkaav.d 99 
                 e+il+ ++vvpviv+k+ e+a+p+a+aLvagG+rvlevtlrte+al+air+++ke+pd++vgaGtv n eql++++eaGaqf++sPGlt+ llkaa+ d
  CTQ28802.1   9 EAILTSGPVVPVIVVKKLEHAVPMAKALVAGGVRVLEVTLRTECALEAIRAIAKEVPDAIVGAGTVTNVEQLKAVTEAGAQFAISPGLTESLLKAATeD 107
                 67999*****************************************************************************************98726 PP

                 TTS-EEEEESSHHHHHHHHHTT--EEEETTTTTTTHHHHHHHHCTTTTT-EEEEBSS--TTTHHHHHTSTTBS-EEESCCC-HHHHHTT-HHHHHH CS
    Aldolase 100 lkipllPGvstpseimlaldlGlkrlklfPaeasGGvkalkalagpfaqvrfiPtGGispanvrdylalpsvlvvgGswlveaslikkedldkitk 195
                  +ipl+PG+st+se+ml++++Glk++k+fPaea+GGvkal+a+agpf+++rf+PtGGispan+rdylal+svl++gGswlv+a++++++d+d+it 
  CTQ28802.1 108 GTIPLIPGISTVSELMLGMQYGLKEFKFFPAEANGGVKALQAIAGPFGHIRFCPTGGISPANYRDYLALNSVLCIGGSWLVPADALEAGDYDRITT 203
                 79********************************************************************************************97 PP

>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3   2.4e-07    0.0014      22      90 ..      26      88 ..      21     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.4e-07
                HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B..--EE-SSHHHHHHHHH....TT- CS
   HMGL-like 22 veeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkarilalvrarekdikaavealkgaga 90
                +e+ +++akaL++ gv+++Ev+ +      +e++raiak+v++a + a    + +++ka  e    aga
  CTQ28802.1 26 LEHAVPMAKALVAGGVRVLEVTLRTEC--ALEAIRAIAKEVPDAIVGAGTVTNVEQLKAVTE----AGA 88
                577789*****************9988..************999555555566777888777....554 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   2.3e-05      0.14     107     169 ..      31      90 ..      17      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 107 ervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagada 169
                   +kalv+ gv vl v      +e  lea+++i k+v++  v aG v++ e+ ka+ eaga++
  CTQ28802.1  31 PMAKALVAGGVRVLEVTL---RTECALEAIRAIAKEVPDAIVGAGTVTNVEQLKAVTEAGAQF 90 
                 567888888888888865...578899**********998788*****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1617.60
//
Query:       CTQ28803.1  [L=603]
Description: 6-phosphogluconate dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.2e-157  523.9   0.0   4.9e-157  523.7   0.0    1.0  1  ILVD_EDD  Dehydratase family
  ------ inclusion threshold ------
       0.01   15.5   0.0      0.018   14.8   0.0    1.3  1  NDUF_B7   NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)
       0.41   10.6   1.4       0.76    9.8   1.4    1.4  1  zf-A20    A20-like zinc finger


Domain annotation for each model (and alignments):
>> ILVD_EDD  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  523.7   0.0  8.2e-161  4.9e-157       2     517 .]      66     598 ..      65     598 .. 0.92

  Alignments for each domain:
  == domain 1  score: 523.7 bits;  conditional E-value: 8.2e-161
    ILVD_EDD   2 piigiansyselvpchvhlkelaeavkegveeaggvpaef.ntigvsDgiamgeegmrysLpsReliadsvetmleaqllDalvlisgCDKivPgllma 99 
                  +i+i++sy++++++h+++++++e++++++++a++v+     + +++Dg+++g++gm++sL sRe+ia+s ++ l+++++D++++++ CDKivPgl ma
  CTQ28803.1  66 NNIAIITSYNDMLSAHQPYEHYPEIIRKALHSANAVGQVAgGVPAMCDGVTQGQDGMELSLLSREVIAMSAAIGLSHNMFDGALYLGVCDKIVPGLTMA 164
                 68*********************************97554146777***************************************************** PP

    ILVD_EDD 100 aarl.niPaifvsgGpmeagkkkkldlssvfeavgalaagkiseeeleeleeaacpgaGsCsgmgTAntmaclaealGlslpgsasipatsaerkelae 197
                 a+++ ++P++f+++Gpm++g  +    ++ ++  + +a+gk+++  l e e+a+++++G+C+++gTAnt+++++e +G++lpgs+++++  + r++l++
  CTQ28803.1 165 ALSFgHLPSVFIPSGPMASGLPN----KEKVRIRQLYAEGKVDRMALLESEAASYHAPGTCTFYGTANTNQMVVEFMGMQLPGSSFVHPDAPLREALTA 259
                 *******************7544....344556669*************************************************************** PP

    ILVD_EDD 198 eagkrivelv..ekdlkp.rdiltkeafeNAivvllalGGStNavlHllAiAreagveltlddfdelsrkvpllaklkPsgkydmedlhraGGvpavlk 293
                 +a++++++++   ++  p  ++ +++ + N+iv+lla+GGStN+++Hl+A+Ar+ag+ +++ddf++ls+ vplla+l+P+g +d++++++aGGvp++++
  CTQ28803.1 260 AAARQVTRMTgnGNEWMPlGKMFDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGIIINWDDFSDLSDVVPLLARLYPNGPADINHFQAAGGVPVLVR 358
                 *********9542234455******************************************************************************** PP

    ILVD_EDD 294 eLlkagllhgdvltvtgktla........enleeaev............keqdvirplekplskegglavLkGnLapeG.avvKtsaveeellkfegpA 371
                 eLlk gllh+dv+tv g  l+        +      +             +++vi ++ekp+s++gg +vL+GnL   G av+Ktsav  e  + e+pA
  CTQ28803.1 359 ELLKGGLLHEDVHTVAGFGLSrytlepwlN------NgeldwregatapLDDQVIATFEKPFSRHGGTKVLSGNL---GrAVMKTSAVPVENQVIEAPA 448
                 ***99*************999555554440......04455566666679*************************...66*********99999***** PP

    ILVD_EDD 372 rvfdseeeaveailkgkikagdvvviryeGPkGgpGmpEm..lkptsallgkglgkkvalitDGRfSGas.kglvighvsPEAaegGpialvedGDiie 467
                 +vf+s+++++ a+++g +++++vvv+r +GPk ++GmpE+  l+p+  +l +    k+al+tDGR+SGas k+++++hv+PEA++gG +a v+dGD+i+
  CTQ28803.1 449 VVFESQHDVLPAFEAGLLDKDCVVVVRHQGPK-ANGMPELhkLMPPLGVLLDR-RFKIALVTDGRLSGASgKVPSAIHVTPEAYDGGLLAKVRDGDLIR 545
                 ********************************.99*******88888888874.49******************************************* PP

    ILVD_EDD 468 idiekrtlelevseeelaaRraawkp..ekkvkt.rgllakyaklvssaseGA 517
                 ++ ++++l+l+v+e+elaaR+ ++    +++v t r+++ + ++  s a++GA
  CTQ28803.1 546 VNGQTGELTLLVDEAELAARQPHIPDlsASRVGTgREMFGALREKLSGAEQGA 598
                 *********************87766655566777*****************8 PP

>> NDUF_B7  NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0     3e-06     0.018      12      55 ..      12      56 ..       8      61 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3e-06
     NDUF_B7 12 lplkeRDyCAhlLiplnkCrrenfp.lpwkCehekhayekCqyed 55
                +  + RD  A++L ++n+ + +++  + ++C +  h +  Cq +d
  CTQ28803.1 12 IIERSRDTRAAYLARINQAKTDTVHrAQLACGNLAHGFAACQADD 56
                55678********************9*****************99 PP

>> zf-A20  A20-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.4   0.00013      0.76       6      18 ..     219     232 ..     218     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00013
      zf-A20   6 g.CGFyGnpatngl 18 
                 g C FyG+++tn +
  CTQ28803.1 219 GtCTFYGTANTNQM 232
                 55**********77 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4640.04
//
Query:       CTQ28804.1  [L=491]
Description: glucose-6-phosphate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.1e-117  391.4   0.0   2.8e-117  391.1   0.0    1.1  1  G6PD_C        Glucose-6-phosphate dehydrogenase, C-terminal d
    1.4e-57  195.2   0.0    8.8e-57  192.6   0.0    2.0  2  G6PD_N        Glucose-6-phosphate dehydrogenase, NAD binding 
     0.0028   18.5   0.0     0.0059   17.4   0.0    1.5  1  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol


Domain annotation for each model (and alignments):
>> G6PD_C  Glucose-6-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  391.1   0.0  4.7e-121  2.8e-117       1     290 []     188     488 ..     188     488 .. 0.97

  Alignments for each domain:
  == domain 1  score: 391.1 bits;  conditional E-value: 4.7e-121
                 HHHHHS-STTSTTSSTTTEEEEEEEEEESS--TTTHHHHTTTHHHHHTTTTHHHHHHHHHH----SSSSHHHHHHHHHHHHTTB----G...GG.EEEE CS
      G6PD_C   1 lvlRfaNalfeplwnrnyidhvqitvketlgvegrggYydeaGalrDvvqnHllqllalvamepPasldaedirdekvkvLkslrplkleevekkvvrG 99 
                 l+lRfaN+lf + w+ ++idhv+itv+e++g+egr+gY+d+aG +rD++qnHllq+l+++am pP++l+a++irdekvkvLkslr +++++v++k+vrG
  CTQ28804.1 188 LALRFANSLFVNNWDCRTIDHVEITVAEEVGIEGRWGYFDQAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDRSNVREKTVRG 286
                 68************************************************************************************************* PP

                 EE.....E--TGS-STTSTTS-TT----SEEEEEEEB-STTTTT-EEEEEEESSBSS-EEEEEEEE---SS-SS.---......--EEEEEEESS-EEE CS
      G6PD_C 100 qYaagavkgkevkgYreeegvakdSkteTfvalkleidnerwagVPfylrtGKrLnekkteiriqfkkvpsdlf.kkke.....rneLviriqpdeais 192
                 qY+ag ++gk+v+gY+eeeg +k+S+teTfva+++ idn+rwagVPfylrtGKrL++k +e+++ fk+++ +lf +  +     +n+L+ir+qpde++ 
  CTQ28804.1 287 QYTAGFAQGKKVPGYLEEEGANKTSNTETFVAIRVDIDNWRWAGVPFYLRTGKRLPTKCSEVVVYFKTPELNLFkE--TwqelpQNKLTIRLQPDEGVD 383
                 **************************************************************************42..346799*************** PP

                 EEEEEE-SSS..E.....EEEEEEHHHHTT...---HHHHHHHHHHHT-GTTSB-HHHHHHHHHHHHHHHHHHHH..---EEEETTSSS-HHHHHHHHH CS
      G6PD_C 193 lklnakkpgl..eleleeveldlsykerfk...lpeaYerLlldvlkgdqtlFvrsdeveaaWkivdpileawee..eklekYeagsrgPeeadellek 284
                 +++ +k+pgl  + +l+ ++ldlsy+e+f+   l +aYerLll+ ++g q+lFvr+deve+aWk+vd+i+eaw++  +++++Y+ag++gP ++ +++++
  CTQ28804.1 384 IQVLNKVPGLdhKHNLQITKLDLSYSETFNqthLADAYERLLLETMRGIQALFVRRDEVEEAWKWVDSITEAWAAdrDAPKPYQAGTWGPVASVAMITR 482
                 *********987778999*********999999999*************************************889988******************** PP

                 HTX.X. CS
      G6PD_C 285 dgrkwr 290
                 dgr+w+
  CTQ28804.1 483 DGRSWN 488
                 *****5 PP

>> G6PD_N  Glucose-6-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.6   0.0   1.5e-60   8.8e-57       1     177 []      13     186 ..      13     186 .. 0.97
   2 ?    0.3   0.0      0.16   9.7e+02      92     127 ..     338     374 ..     254     408 .. 0.63

  Alignments for each domain:
  == domain 1  score: 192.6 bits;  conditional E-value: 1.5e-60
      G6PD_N   1 vifGasGdLakrkllPaLyelaregllpeevrivgvarsklsdeefrekvkealkkekekeeldeekleeflkrleyvsgdleeeeeyekLkekleele 99 
                 vifGa+GdLa+rkllP+Ly+l ++g++++++ri+gv+r +++++++++ v+eal++   ke++de  ++++  rle++++d+++++ +++L e+l++++
  CTQ28804.1  13 VIFGAKGDLARRKLLPSLYQLEKAGQIHADTRIIGVGRADWDKAAYTKVVREALETFM-KEKIDEGLWDTLSGRLEFCNLDVNDTSGFTRLGEMLDQKN 110
                 8*****************************************************8766.4559**********************************99 PP

      G6PD_N 100 anrlfYlavppslfeevaeklkkaglakeeewkrvvvEKPfGkdlesarelneelkkvfkeeqiyrIDhYLGketvqN 177
                 + ++ Y+a+pps+f+++++ l++a+l++  + +rvv+EKP+G++le++re+n++++++f+e q+yrIDhYLGketv N
  CTQ28804.1 111 RVTINYFAMPPSTFGAICKGLGEAKLNA--KPARVVMEKPLGTSLETSREINDQVGEFFEECQVYRIDHYLGKETVLN 186
                 **************************97..678*******************************************98 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.16
      G6PD_N  92 kekleeleanrlfYlavpp.slfeevaeklkkaglak 127
                  ++l ++ +++++Y+ +p  +lf+e+ ++l +++l+ 
  CTQ28804.1 338 GKRLPTKCSEVVVYFKTPElNLFKETWQELPQNKLTI 374
                 3333333368889999986589999999998887764 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   9.9e-07    0.0059       5     106 ..      45     160 ..      43     170 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9.9e-07
                   EETTSHH......HHHHHHHHHHTTTTEEE.EEEECSSHHHHHHH.HHHTTHEEESSHHHHHTCT.TESEEEE-S-GGG....HHHHHHHHHHTT-. CS
  GFO_IDH_MocA   5 iiGaGki......gskhlrplnesqrleev.valldpdaeraeav.aesfgveaysdleelladp.eidavivatpngt....heelakaaleagk. 87 
                   iiG+G++       +k +r   e++ +e++  +l+d+ + r e +  +  + + ++ l e+l+++ ++ + + a+p++t     + l +a l+a++ 
    CTQ28804.1  45 IIGVGRAdwdkaaYTKVVREALETFMKEKIdEGLWDTLSGRLEFCnLDVNDTSGFTRLGEMLDQKnRVTINYFAMPPSTfgaiCKGLGEAKLNAKPa 141
                   789998877644333335555555555566359**********99445555569999******9999**********88433455556666777779 PP

                   EEEEESSS-SSHHHHHHHH CS
  GFO_IDH_MocA  88 hvllEKPlattveeakelv 106
                    v++EKPl t++e  +e+ 
    CTQ28804.1 142 RVVMEKPLGTSLETSREIN 160
                   ************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3601.40
//
Query:       CTQ28805.1  [L=295]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-32  108.8   0.3    4.9e-31  106.5   0.0    2.2  2  HTH_6         Helix-turn-helix domain, rpiR family
    3.2e-28   98.2   0.2    6.2e-28   97.3   0.2    1.5  1  SIS           SIS domain
    1.2e-10   41.6   2.0    7.4e-07   29.3   0.1    2.5  2  SIS_2         SIS domain
     0.0021   17.8   1.3      0.008   16.0   0.1    2.6  3  HTH_IclR      IclR helix-turn-helix domain
     0.0073   15.7   0.0      0.017   14.5   0.0    1.6  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
  ------ inclusion threshold ------
      0.018   14.6   0.0      0.053   13.1   0.0    1.8  2  HTH_24        Winged helix-turn-helix DNA-binding
        0.1   12.4   0.8         16    5.3   0.0    2.4  2  SKA2          Spindle and kinetochore-associated protein 2
       0.11   12.4   0.3       0.82    9.6   0.0    2.3  2  MarR_2        MarR family
       0.14   12.1   0.0       0.51   10.3   0.0    1.9  2  MarR          MarR family


Domain annotation for each model (and alignments):
>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.0   2.5e-34   4.9e-31       1      76 [.       7      82 ..       7      83 .. 0.98
   2 ?   -0.9   0.0      0.83   1.7e+03      30      54 ..     190     214 ..     181     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 2.5e-34
                --HHHHHHHH-----HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH--HHHHHHHS CS
       HTH_6  1 mnllekiqskkekltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselklaLakelak 76
                mn+lekiqs+ e+l+kse+k+ae+ila p++ai++si+alA +a+vSe+t++rf+++L ++GF+++kl+La++la+
  CTQ28805.1  7 MNMLEKIQSRLEHLSKSERKVAEVILATPEQAIHSSIAALALEAGVSEPTVNRFCRSLETRGFPDFKLHLAQSLAH 82
                9************************************************************************996 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.83
                 ---TT--HHHHHHHTT--HHHHHHH CS
       HTH_6  30 dkaielsikalAkaaavSeativrf 54 
                 ++ + +s+ +lA+ a   +a+++ +
  CTQ28805.1 190 HTGRTKSLVELAQLARENDAMVIAL 214
                 5667789999999999999999866 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.2   3.1e-31   6.2e-28       1     130 [.     130     258 ..     130     259 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 3.1e-31
                 HHCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSS CS
         SIS   1 lLakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplaread 99 
                 lL++ak+i ++G G+s+a+a++++ k+ +++++v   +d    +++ ++++d+dd+v++is++g+tk+lv++a+la+e++a++ia+T s+g+plarea+
  CTQ28805.1 130 LLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVIYSDDIVLQRMS-CMNCDDDDVVVIISHTGRTKSLVELAQLARENDAMVIALT-SAGTPLAREAT 226
                 599*******************************999999998888.****************************************.*********** PP

                 EEEEEEEECHC.SSSHCHHHHHHHHHHHHHHH CS
         SIS 100 lalyinaepet.lvastksltaqlaaldalav 130
                 la+++ +++ t +++++ s +aql+++d+la+
  CTQ28805.1 227 LAITLDVPEDTdIYMPMVSRLAQLTVIDVLAT 258
                 *****************************986 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.3   9.5e-05      0.19       4      58 ..     106     157 ..     103     175 .. 0.77
   2 !   29.3   0.1   3.7e-10   7.4e-07     100     138 .]     178     216 ..     164     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.5e-05
                 HHHHHHHHHHHHH.SHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT CS
       SIS_2   4 aevteilerivet.qaeaiekaaeliadslenggkvlvfGsGhSaalaeelaarag 58 
                 +++++ l+++  + +++a+++a++l++++    +k+  fG G Saa a ++++++ 
  CTQ28805.1 106 ESAMASLDQVHHSlDMSAVNRAVDLLTQA----KKIAFFGLGSSAAVAHDAMNKFF 157
                 67778888886665678888888887765....99***************999875 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 3.7e-10
                 T--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2 100 rlkpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                 + +  Dv ++iS+ G+ +++ve+a+ a+e ++ viAlts
  CTQ28805.1 178 NCDDDDVVVIISHTGRTKSLVELAQLARENDAMVIALTS 216
                 56889*********************************8 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     4e-06     0.008      19      47 ..      41      69 ..      17      69 .. 0.86
   2 ?   -3.0   0.0       3.4   6.7e+03       1      10 [.     123     132 ..     123     133 .. 0.82
   3 ?   -1.2   0.0      0.93   1.8e+03      24      27 ..     200     203 ..     187     222 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4e-06
                -BHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
    HTH_IclR 19 ltlselArrtglpkStvhRlLqtLvelGy 47
                 +++ lA ++g++ +tv R++++L+ +G+
  CTQ28805.1 41 SSIAALALEAGVSEPTVNRFCRSLETRGF 69
                4899***********************97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.4
                 HHHHHHHHHC CS
    HTH_IclR   1 sldRalaiLd 10 
                 ++ Ra+++L 
  CTQ28805.1 123 AVNRAVDLLT 132
                 6889**9995 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.93
                 HHHH CS
    HTH_IclR  24 lArr 27 
                 lA+ 
  CTQ28805.1 200 LAQL 203
                 4433 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   8.6e-06     0.017      22      46 ..      36      59 ..      36      64 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.6e-06
  HTH_Tnp_ISL3 22 elllesrsvkavArqlgvSwtTVwr 46
                  e++++s s++a A + gvS+ TV+r
    CTQ28805.1 36 EQAIHS-SIAALALEAGVSEPTVNR 59
                  6899**.*****************9 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.7e-05     0.053      19      45 ..      42      68 ..      40      69 .. 0.92
   2 ?   -2.8   0.0       2.5   4.9e+03      32      44 ..     122     134 ..     122     137 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.7e-05
      HTH_24 19 sqreLAerlglSpstvnrrlkrLeeeG 45
                s++ LA + g+S +tvnr  + Le  G
  CTQ28805.1 42 SIAALALEAGVSEPTVNRFCRSLETRG 68
                8999********************998 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.5
      HTH_24  32 stvnrrlkrLeee 44 
                 s+vnr ++ L+++
  CTQ28805.1 122 SAVNRAVDLLTQA 134
                 6899999988876 PP

>> SKA2  Spindle and kinetochore-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.3    0.0095        19      41      65 ..       4      28 ..       1      37 [. 0.87
   2 ?    5.3   0.0    0.0079        16       9      29 ..     103     123 ..      95     132 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0095
        SKA2 41 vkLlerlkkvkeelqaLkeqceell 65
                + L++ l+k++++l++L++  ++++
  CTQ28805.1  4 LLLMNMLEKIQSRLEHLSKSERKVA 28
                579999***********99888776 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0079
        SKA2   9 alFqkaesdLdyvqhrLekef 29 
                 ++F++a + Ld v+h L++ +
  CTQ28805.1 103 KIFESAMASLDQVHHSLDMSA 123
                 68****************876 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00041      0.82      10      50 ..      27      69 ..      19      69 .. 0.79
   2 ?   -0.4   0.0      0.54   1.1e+03      34      48 ..     120     134 ..     118     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00041
                HHHHHHCTTTSEE..EHHHHHHHHTSSHHHHHHHHHHHHHTTS CS
      MarR_2 10 vLaaLgrrpgrdl..tvgelarrlglsksavsrilkrLvaaGL 50
                v  ++ + p++ +  ++++la + g+s ++v+r ++ L+ +G+
  CTQ28805.1 27 VAEVILATPEQAIhsSIAALALEAGVSEPTVNRFCRSLETRGF 69
                555666666663344999**********************995 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.54
                 SHHHHHHHHHHHHHT CS
      MarR_2  34 sksavsrilkrLvaa 48 
                 + sav+r+++ L +a
  CTQ28805.1 120 DMSAVNRAVDLLTQA 134
                 6699******99987 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00025      0.51      13      46 ..      36      69 ..      30      70 .. 0.84
   2 ?   -2.8   0.0       3.1   6.2e+03      29      43 ..     119     133 ..     117     134 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00025
                HHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
        MarR 13 yeqgplsvseLakklgvskstvtrvldrLekkGl 46
                ++    s++ La   gvs +tv r+ + Le +G+
  CTQ28805.1 36 EQAIHSSIAALALEAGVSEPTVNRFCRSLETRGF 69
                5555667889***********************8 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.1
                 S-HHHHHHHHHHHHH CS
        MarR  29 vskstvtrvldrLek 43 
                 ++ s+v r++d L +
  CTQ28805.1 119 LDMSAVNRAVDLLTQ 133
                 678999999997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2299.97
//
Query:       CTQ28806.1  [L=480]
Description: pyruvate kinase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.5e-130  434.0   4.4   4.9e-130  433.4   4.4    1.2  1  PK        Pyruvate kinase, barrel domain
    1.3e-29  102.8   0.2    3.4e-29  101.4   0.2    1.7  1  PK_C      Pyruvate kinase, alpha/beta domain


Domain annotation for each model (and alignments):
>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.4   4.4  5.5e-134  4.9e-130       2     341 ..       6     344 ..       5     350 .. 0.98

  Alignments for each domain:
  == domain 1  score: 433.4 bits;  conditional E-value: 5.5e-134
                 --SEEEEEESCCCTSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHTTTTS-EEEEE---S-EBB--BTTCSSSEEE-TTSEEEEE-SCTC CS
          PK   2 rrtkivctlGPasesvekleklieaGlnvvrlnfshGsheehqerienvreaekklgkkvaillDtkGpeirtgllkdgkkdielkegdklkvsldekl 100
                 rrtkiv+tlGPa++++++lek+i+aG+nvvr+nfshG+ e+hq r ++vre++ klg++vail D++Gp+ir++++k+gk  i l+ gdk+   ld++l
  CTQ28806.1   6 RRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGTPEDHQLRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGK--IFLNVGDKFL--LDANL 100
                 9*****************************************************************************99..*********9..67777 PP

                 .TTTBBTTEEEBS-TTHHHHS-TTEEEEETTTTEEEEEEEEETTEEEEEEESS-EEE-SS-BEE-TTS---S-SS-HHHHHHHHHHHHCT-SEEEETTE CS
          PK 101 .keegdeelialdyknivkdvevGktilvdDGllslkvlevdeekeleveventgvlgskkgvnlpgtkvdlpalsekDkadlrfgvkqgvdliaasfv 198
                  k+egd+e++ +dyk++  dv +G+++l+dDG+++lkvlev+  k + +ev+++g l+++kg+n++g+ ++++al++kDkad+ +++k gvd +a+sf 
  CTQ28806.1 101 gKGEGDKEKVGIDYKGLPADVVPGDILLLDDGRVQLKVLEVQGMK-VFTEVTVGGPLSNNKGINKLGGGLSAEALTDKDKADIVTAAKIGVDYLAVSFP 198
                 6889**************************************999.***************************************************** PP

                 -SHHHHHHHHHHHTCCCTTSEEEEEE-SCHHHHT...HHHHHHHSSEEEEEHHHHHHHSTCCCHHHHHHHHHHHHHHHT--EEEESSTTGGGGTSSS-- CS
          PK 199 rkasDvkevrevleeegkeikiiakienqegven...ldeileasDgimvarGDlGieipaekvllvqkklikkcnlagkpvitatqmlesmiknPrpt 294
                 r ++D++++r+++ ++g ++ki+ak+e++e+v +   +d+++ asD++mvarGDlG+ei++++++ +qk li++++++++ vitatqm+esmi+nP+pt
  CTQ28806.1 199 RCGEDLNYARRLARDAGCDAKIVAKVERAEAVCDqdaMDDVILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRSVITATQMMESMITNPMPT 297
                 ********************************76667************************************************************** PP

                 HHHHHHHHHHHHHT-SEEEESHHHHTSS-HHHHHHHHHHHHHHHHHT CS
          PK 295 raevsDvanavlDGtDavmLsgetakGkyPveavkamaevaleaeka 341
                 raev+DvanavlDGtDavmLs+eta+G+yP+e+v+ama+v+l aek 
  CTQ28806.1 298 RAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAMARVCLGAEKI 344
                 ********************************************985 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.2   3.8e-33   3.4e-29       1     117 []     363     477 ..     363     477 .. 0.94

  Alignments for each domain:
  == domain 1  score: 101.4 bits;  conditional E-value: 3.8e-33
                 HHHHHHHHHHHHHH.T-SEEEEE-SSSHHHHHHHHT-TSSEEEEEESHHHHHHHHHHCTTEEHHH.HHHHH...TTSHHHHHHHHHHHTTSS-STSEEE CS
        PK_C   1 eaiakaaveaaeel.gakaIvvltesGetArliskyrpkvpiiavtpneltarqlalyrGvypvlvekaktaestdellreavkvakeaglvkkgdevv 98 
                 eaia++a++aa++l g+ aI+++tesG+tA++ s++ +++pi+a++++e+t +  alyrGv+pv ++++   + +  +  +av+ + ++g++ +gd+vv
  CTQ28806.1 363 EAIAMSAMYAANHLkGITAIITMTESGRTALMTSRISSGLPIFALSRHERTLNLTALYRGVTPVFFDSQ--NDGVA-AAHDAVNLLRDKGYLVSGDLVV 458
                 89************99*************************************************9863..23444.47899***************** PP

                 EEE-SSSS..SS--EEEEE CS
        PK_C  99 vtaGtpkgesgttNtlrVv 117
                 vt+G+ +++ g+tNt r++
  CTQ28806.1 459 VTQGDVMSTIGSTNTTRIL 477
                 *****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3555.01
//
Query:       CTQ28807.1  [L=324]
Description: myristoyl-acyl carrier protein (ACP)-dependent acyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-100  336.0   0.0     2e-100  335.8   0.0    1.0  1  Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransfera


Domain annotation for each model (and alignments):
>> Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.8   0.0  1.1e-104    2e-100       2     295 .]      12     305 ..      11     305 .. 1.00

  Alignments for each domain:
  == domain 1  score: 335.8 bits;  conditional E-value: 1.1e-104
  Lip_A_acyltrans   2 kkfkkellhlrywlvwlgiavllllallPesvlrkilkglgrlaakflkrrrkiarkNLalvfpekseaerekiidksfesvgraivetirvaf 95 
                      +kf+k++l +ryw++wlg+++ + +al+P s+++ +l +lgrl+++++k++r++a+ NL ++fpekse ere+iid++++s+++a+v+++++  
       CTQ28807.1  12 PKFEKSFLLPRYWGAWLGVFAFAGIALTPPSFRDPLLGKLGRLVGRLAKSSRRRAQINLLYCFPEKSEYEREAIIDAMYASAPQAMVMMAELGL 105
                      79******************************************************************************************** PP

  Lip_A_acyltrans  96 isdeeiakrveviglehikealaeeegvilllpHfanwelaglvlakqypglavvaenkknpllnqliislRerfggkllprknaikelikalr 189
                      +++++i +rv+++g+  i+e+++++e+vi+l+pH + ++++++++a+ ++++a++++n+ np+++++++++R+rfgg++++r+++ik++i+++r
       CTQ28807.1 106 RDPQKILARVDWQGKAIIDEMQRNNEKVIFLVPHAWGVDIPAMLMASGGQKMAAMFHNQGNPVFDYVWNTVRRRFGGRMHARNDGIKPFIQSVR 199
                      ********************************************************************************************** PP

  Lip_A_acyltrans 190 kgevvvllpDqdlgrkdsvfvpfFgepaatttspaklalktkaavipvaiirkkdgskytvsvhPaldlssteDveqiaqalneilekeitaaP 283
                      +g+++++lpDqd+g+++s fv+fF++++at++++++l++ ++a+v+p++++++++++++tv v+P++d   ++D+++ia+++ne++e +++++ 
       CTQ28807.1 200 QGYWGYYLPDQDHGAEHSEFVDFFATYKATLPAIGRLMKVCRARVVPLFPVYDGKTHRLTVLVRPPMDDLLDADDTTIARRMNEEVEVFVKPHT 293
                      ********************************************************************************************** PP

  Lip_A_acyltrans 284 eqylwlhrrfkt 295
                      eqy+w+++++kt
       CTQ28807.1 294 EQYTWILKLLKT 305
                      **********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2570.97
//
Query:       CTQ28808.1  [L=439]
Description: putative metallopeptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-34  115.8   0.3    2.9e-33  113.9   0.2    2.0  2  Peptidase_M23    Peptidase family M23
    6.1e-11   42.3   0.8    1.7e-07   31.3   0.0    2.9  2  OapA             Opacity-associated protein A LysM-like domai
      4e-09   36.2   0.1    6.9e-09   35.4   0.1    1.4  1  OapA_N           Opacity-associated protein A N-terminal moti
    8.4e-09   35.4   1.2    1.6e-08   34.5   0.2    2.0  2  LysM             LysM domain
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.39   10.6   0.0    2.0  1  Biotin_lipoyl_2  Biotin-lipoyl like


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.8   2.9e+03      10      24 ..     177     191 ..     142     209 .. 0.73
   2 !  113.9   0.2   8.1e-37   2.9e-33       2      96 .]     312     406 ..     311     406 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.8
                    ETTT-EEEESSSEEE CS
  Peptidase_M23  10 apkgtpVlAaadGtV 24 
                     +kg+ V ++ +GtV
     CTQ28808.1 177 LQKGDWVNSVLKGTV 191
                    456777777777777 PP

  == domain 2  score: 113.9 bits;  conditional E-value: 8.1e-37
                    EESSEEEEETTT-EEEESSSEEEEEEEEETTTEEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEBSTSSCSSSEEEEEEEETTEEE-C CS
  Peptidase_M23   2 fhkGidiaapkgtpVlAaadGtVvfagkkegyGnvviidhgdgystlyahlskisvkegqkVkaGqvIGtvgstgrstgphLhfeirkngkavdp 96 
                    +h+G+d+a+p+gtpVlA+ dG+Vv a+ ++++G +v i+hg  y+t+y+hl k+ vk+gqkVk+G+ I+ +g+tgrstgphLh+e++ n++av+p
     CTQ28808.1 312 PHRGVDFAMPQGTPVLAVGDGEVVVAKRSGAAGYYVAIRHGRTYTTRYMHLRKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNP 406
                    7***************************9888**************************************************************9 PP

>> OapA  Opacity-associated protein A LysM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   4.7e-11   1.7e-07       3      79 ..      96     170 ..      95     176 .. 0.88
   2 !    8.4   0.1   0.00064       2.3      11      81 ..     193     271 ..     185     275 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 4.7e-11
        OapA   3 keyqvkkgktLaqvFRdnnLplsdvnalakveGadkplSnlksGqkvriklnaqgkvdelqlekgak.svlftRqsDG 79 
                 +ey v++g+tL+ +  + ++++ d+  l+    adk l nlk Gq++   l+a+g+++ l+ e + + +  +tR   G
  CTQ28808.1  96 HEYVVSTGDTLSSILNQYGIDMGDIAQLS---SADKELRNLKIGQQLSWTLTADGDLQSLTWEMSRReTRTYTRVDNG 170
                 68******************999986665...577****************************999956678887665 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00064
        OapA  11 ktLaqvFRdnnLplsdvnalakveGadkplSnlksGqkvrikln........aqgkvdelqlekgaksvlftRqsDGsf 81 
                  + +   Rd +L  ++++a+ k+   +    +lk+G+++ + ++        +q ++  ++l +++k+   +R  DG f
  CTQ28808.1 193 ASFVSSARDAGLTSTEISAVIKAMQWQMDFRKLKKGDEFSVLMSremldgkrEQSQLLGVRLRSDGKDYYAIRAEDGKF 271
                 55666679******************************98865422222322578888999999999999999999998 PP

>> OapA_N  Opacity-associated protein A N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   1.9e-12   6.9e-09       2      28 .]      12      39 ..      11      39 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.9e-12
      OapA_N  2 fqrLPklHRrlliaLslvvlvlllw.Ps 28
                f++LP++HR++l++Ls+++l +++w P+
  CTQ28808.1 12 FNNLPRPHRVMLGSLSVLTLAVAVWrPY 39
                9************************996 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.2   4.4e-12   1.6e-08       1      43 [.      98     141 ..      98     142 .. 0.92
   2 ?   -2.3   0.1       1.4     5e+03      36      42 ..     368     374 ..     366     377 .. 0.67

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 4.4e-12
                 EEE-TT--HHHHHHHCTCHHHHHHHHC....TCSSCGG--TTEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaN....nlsspdkifpGqkLki 43 
                 Y+V +GDTL+sI ++ygi++ +++++     +l++   +++Gq+L +
  CTQ28808.1  98 YVVSTGDTLSSILNQYGIDMGDIAQLSsadkELRN---LKIGQQLSW 141
                 9**************************77777777...*******86 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
                 -TTEEEE CS
        LysM  36 fpGqkLk 42 
                 +pGqk k
  CTQ28808.1 368 KPGQKVK 374
                 6777764 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00011      0.39      14      31 ..     363     380 ..     361     381 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
  Biotin_lipoyl_2  14 aqlnVkdGqrVkaGdvLa 31 
                       +l+Vk Gq Vk Gd +a
       CTQ28808.1 363 RKLLVKPGQKVKRGDRIA 380
                      689************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3397.22
//
Query:       CTQ28809.1  [L=314]
Description: zinc transporter subunit: periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-59  200.6   0.0    3.1e-59  200.5   0.0    1.0  1  ZnuA      Zinc-uptake complex component A periplasmic


Domain annotation for each model (and alignments):
>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.5   0.0   1.7e-63   3.1e-59       1     254 [.      28     308 ..      28     310 .. 0.89

  Alignments for each domain:
  == domain 1  score: 200.5 bits;  conditional E-value: 1.7e-63
                 EEESSHHHHHHHHHHHGGGCEEEECS-TTSTTTT----HHHHHHHHHSSEEEESSTTTSGTHHHHHHHHTTCCCEEEEETTTTC............CSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxx RF
        ZnuA   1 VvattsplgdlvrqvaGdrvevtvLvppgadpHsyeptprdvrklaeAdllvynglelEtwldkllasssqatrvevidlsegv............eee 87 
                 Vv++++plg +++++a    e +vL+p+ga+ H+y+++p+dv++l++Adl+v++g e+E+++dk  +s++++++v++ +l+ gv            +  
  CTQ28809.1  28 VVTSMKPLGFIAAAIADGVTETQVLLPDGASEHDYSLRPSDVKRLQNADLVVWIGPEMEAFMDKSTQSIAANKKVTIAELD-GVkpllitgaddddD-- 123
                 9***************999**********************************************9999988888888766.555555555554331.. PP

                 BCSS...................ESTGGGSHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGTEGEEEESSSTTHHHH CS
                 xxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ZnuA  88 eeee...................DpHiWlspknaiamveniadaLveadpanadtyeanaaayiekLeeldaeireelaeipeekrklvtthdafgyla 167
                   ++                   + H+Wlsp+ a+  + +i d+L+e+ p+  ++++ n++++++ L + d+++ +ela +  + + ++++hda+gy++
  CTQ28809.1 124 --HHghdhgaaekgdgdhhhgiyNMHLWLSPEIARLSAVAIHDKLLELMPQSRAKLDSNLQQFETALAATDKQVSNELAPL--KGKGYFVFHDAYGYFE 218
                 ..223355777788888888999********************************************************55..5666************ PP

                 HHTT-EEEEEESSSSS....HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHHHT-EEEEE-STSS.STSTTSTTSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
        ZnuA 168 rayglevagiagiste....aaqiaalieeikeagvkaifveplaspklaetlaeeagvkvatlyslds.lgdegsaetYidmmranleslk 254
                 ++ygl+ +g +++++e    a+++ ++++++ e++++++f+ep+++p+++e++a+ + v+++tl++l + ++ ++  ++Y +++++ +++  
  CTQ28809.1 219 KHYGLTSLGHFTVNPEiqpgAQRLHEIRTQLVEQKATCVFAEPQFRPAVIEAVARGTSVRMGTLDPLGTgITLGK--TSYPQFLTQLANQYS 308
                 ******************************************************************655455555..799999999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2626.45
//
Query:       CTQ28810.1  [L=250]
Description: zinc transporter subunit: ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-28  100.3   0.0    1.7e-28   99.8   0.0    1.2  1  ABC_tran      ABC transporter
    2.3e-08   34.2   1.4    0.00057   19.8   0.1    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0014   18.5   0.1     0.0065   16.4   0.0    1.9  2  RsgA_GTPase   RsgA GTPase
     0.0028   17.4   0.2     0.0066   16.2   0.2    1.6  1  AAA_29        P-loop containing region of AAA domain
     0.0051   16.4   2.2      0.045   13.3   2.2    2.0  1  AAA_25        AAA domain
     0.0068   15.9   0.1          1    8.7   0.0    2.2  2  SMC_N         RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.016   15.6   0.3      0.028   14.8   0.3    1.5  1  AAA_16        AAA ATPase domain
      0.026   14.8   0.6       0.12   12.6   0.6    2.0  1  AAA_22        AAA domain
      0.026   13.9   0.0      0.054   12.9   0.0    1.4  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
       0.05   13.6   0.1         10    6.1   0.0    2.1  2  MutS_V        MutS domain V
      0.061   13.8   0.0       0.09   13.3   0.0    1.2  1  AAA_23        AAA domain
      0.098   12.4   0.0       0.27   10.9   0.0    1.7  2  AAA_30        AAA domain
        0.1   12.8   0.0        2.4    8.4   0.0    2.2  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
       0.11   11.2   0.4        1.1    8.0   0.0    2.2  2  ABC_ATPase    Predicted ATPase of the ABC class
       0.15   12.0   0.1       0.29   11.0   0.1    1.4  1  Rad17         Rad17 P-loop domain
       0.16   11.5   0.0       0.21   11.2   0.0    1.3  1  AAA_27        AAA domain
       0.25   10.2   0.1       0.38    9.6   0.1    1.1  1  AAA_PrkA      PrkA AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.0   1.6e-31   1.7e-28       1     137 []      20     149 ..      20     149 .. 0.92

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 1.6e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........esdeeiekalsk 91 
                 l+++sl l +g+++ ++G+nGaGKStL+++++gl+ pteG i           ++ +r +ig++pq+ +l+ +l +  +        +++++i  al++
  CTQ28810.1  20 LSDISLALTPGKILTLLGPNGAGKSTLVRVVLGLVAPTEGVI-----------KRDARLRIGYVPQKLHLDATLPLTVSrflrlrpgTRKDDILPALKR 107
                 689***************************************...........6789**********99999986333357***999999999999999 PP

                 STTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  92 lglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++  +l d ++    ++LSgG+ qrv larall++p+ll+lDEpt+
  CTQ28810.1 108 VQAGHLIDAPM----QKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149
                 99999999988....*****************************95 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   3.5e-05     0.037       3      22 ..      34      53 ..      32      75 .. 0.80
   2 !   19.8   0.1   5.4e-07   0.00057     220     302 ..     104     184 ..      69     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.5e-05
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                 l GpNg+GKS+L +   +l
  CTQ28810.1 34 TLLGPNGAGKSTLVRVVLGL 53
                699**********9998777 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 5.4e-07
      AAA_21 220 gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                  +  +  g+  + p+ +lS G  +   l+ all ++    ll++DEp  g +   +  l++l+++l+   +  v++++H+ +l+
  CTQ28810.1 104 ALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRP---QLLVLDEPTQGVDVNGQVALYDLINQLRHeLDCAVLMVSHDLHLV 184
                 555667788889999999999555559999999999...99**********************9998899**********9995 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.1e-06    0.0065      85     122 ..      15      53 ..       3      70 .. 0.78
   2 ?   -0.9   0.0       1.2   1.3e+03     115     134 ..     162     181 ..     160     194 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.1e-06
                  TTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  85 ktkegleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                   +++ l++++ +l+  k+ +l+G+ G+GKStL+ ++l+ 
   CTQ28810.1  15 GQRRVLSDISLALTPgKILTLLGPNGAGKSTLVRVVLGL 53 
                  5566778888888877*****************998775 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.2
                  HHHHHCTT-----S------ CS
  RsgA_GTPase 115 Linallpelelktgevsekl 134
                  Lin+l+ el+ ++  vs++l
   CTQ28810.1 162 LINQLRHELDCAVLMVSHDL 181
                  89999999999999999876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   6.2e-06    0.0066      20      43 ..      28      51 ..      19      61 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.2e-06
      AAA_29 20 dlkgatlltGpsGsGKSTllDAiq 43
                ++  +  l Gp+G+GKSTl+  + 
  CTQ28810.1 28 TPGKILTLLGPNGAGKSTLVRVVL 51
                445578899**********95555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   2.2   4.2e-05     0.045      32     188 ..      29     179 ..      16     182 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.2e-05
      AAA_25  32 agelallaGapgtGKttlaldlalavatGkpwlg...pvap.eqgkVlyvsaEdsedelrrRlravgealrddarllvldlagv.eslpLfakdrggtl 125
                  g++  l G+ g+GK+tl+  +   va  + + +   +++       l ++a  +   +  R+ +++   r d+ l++l++++  + ++  +++  g  
  CTQ28810.1  29 PGKILTLLGPNGAGKSTLVRVVLGLVAPTEGVIKrdaRLRIgYVPQKLHLDATLPL--TVSRFLRLRPGTRKDDILPALKRVQAgHLIDAPMQKLSGGE 125
                 57888999***********9999999944444454332222223333444444444..556777777777999999***99888777777666655555 PP

      AAA_25 126 ltadvdaleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                 +++++  l++a+    +++l+v+D  +   g d n + +   l+++l++   ++++avl+v H
  CTQ28810.1 126 TQRVL--LARALLN--RPQLLVLDEPT--QGVDVNGQVALYDLINQLRH---ELDCAVLMVSH 179
                 56665..6777666..59******765..57788888887777777776...9*********9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00097         1      26      44 ..      32      50 ..      20      64 .. 0.83
   2 ?    5.1   0.0     0.012        13     136     202 ..     120     184 ..      86     199 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00097
                EEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnlldAi 44
                +  ++GpNG+GKs l+  +
  CTQ28810.1 32 ILTLLGPNGAGKSTLVRVV 50
                56789********998655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.012
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreeml 202
                  LSgGe +     +l+A    ++  l +lDe  +  D +   ++ +l+++ +++  + ++++s++ +++
  CTQ28810.1 120 KLSGGETQ----RVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLINQLRHEldCAVLMVSHDLHLV 184
                 79999865....344555556778899**********************99988335566666654433 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.3   2.6e-05     0.028      25      51 ..      31      57 ..      15     175 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.6e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekd 51
                 ++ l G+ G GKs+lvr +l  +  +
  CTQ28810.1 31 KILTLLGPNGAGKSTLVRVVLGLVAPT 57
                7999**************999655544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.6   0.00012      0.12       5      99 ..      30     146 ..      27     192 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee......................erpevv..fvtlpsstsskdllrellralglelkaerlsseell 79 
                  +il++ G+ G+GK+tl+r +l          e                        p +v  f  l  +t  +d+l +l r     l +  +  + l 
  CTQ28810.1  30 GKILTLLGPNGAGKSTLVRVVLGLVAPT----EgvikrdarlrigyvpqklhldaTLPLTVsrFLRLRPGTRKDDILPALKRVQAGHLID--APMQKLS 122
                 5799**************9888776333....1244466666666555555433322222234444444443333333333322222222..4444444 PP

      AAA_22  80 .ealeqalrarav...ielliiDE 99 
                     ++ l ara    ++ll++DE
  CTQ28810.1 123 gGETQRVLLARALlnrPQLLVLDE 146
                 444444444444455566777776 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.1e-05     0.054       7      49 ..      15      57 ..       9      65 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.1e-05
  Mg_chelatase  7 GqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllppl 49
                  Gq++    + +a + g  l l+Gp G+GK+ l + + +l++p 
    CTQ28810.1 15 GQRRVLSDISLALTPGKILTLLGPNGAGKSTLVRVVLGLVAPT 57
                  88888889999999999*******************9999886 PP

>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0097        10       3      18 ..      35      50 ..      32      59 .. 0.84
   2 ?    5.5   0.0     0.015        15      76     141 ..     137     201 ..     124     216 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0097
                EE-STTSSHHHHHHHH CS
      MutS_V  3 itGpnmaGkstylrqv 18
                + Gpn aGkst++r v
  CTQ28810.1 35 LLGPNGAGKSTLVRVV 50
                56***********975 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.015
                 -TTSEEEEESTS-SS-HHHHHHHHHHHHHHHHHTT--EEEEEES-GGGGGHHHHSTTEEEEEEEEE CS
      MutS_V  76 tekslvilDElGRGtstydGlaialavaeyllekikaktlfatHyheltklaekleevknlhlavk 141
                 ++  l++lDE   G  ++  +a+ + ++++l ++  + +l+  H  +l   ++      n h+ ++
  CTQ28810.1 137 NRPQLLVLDEPTQGVDVNGQVAL-YDLINQLRHELDCAVLMVSHDLHLVMAKTDEVLCLNQHICCS 201
                 456799********988766666.7889999*************9888877776666666666665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.5e-05      0.09      21      37 ..      32      48 ..       6      51 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.5e-05
      AAA_23 21 ltlItGpNGaGKTTild 37
                +  + GpNGaGK+T+++
  CTQ28810.1 32 ILTLLGPNGAGKSTLVR 48
                55678*********985 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00026      0.27      14      42 ..      26      54 ..      11      77 .. 0.77
   2 ?   -1.2   0.0       1.3   1.4e+03      81      96 ..     127     146 ..      84     174 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00026
      AAA_30 14 ltsgdrvavltGpAGtGKttalkalreaw 42
                + ++ ++ +l Gp G+GK+t+++++  ++
  CTQ28810.1 26 ALTPGKILTLLGPNGAGKSTLVRVVLGLV 54
                445556999**************986655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.3
      AAA_30  81 k....grarlepgtllivDE 96 
                 +    +ra l++ +ll+ DE
  CTQ28810.1 127 QrvllARALLNRPQLLVLDE 146
                 04444455677778888888 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0023       2.4      27      87 ..     115     162 ..     105     165 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0023
     SbcCD_C  27 srssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllel 87 
                 ++ +++lSGGe+q +    la   +al++       +++l++LDE  +++D + + +l +l
  CTQ28810.1 115 DAPMQKLSGGETQRV---LLA---RALLN-------RPQLLVLDEPTQGVDVNGQVALYDL 162
                 667888999999543...333...22333.......4788888888888887766666555 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.11   1.2e+02     243     262 ..      29      48 ..      12      54 .. 0.85
   2 ?    8.0   0.0    0.0011       1.1     375     418 ..     158     201 ..     118     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.11
                 -SSEEEEEE-TTSSHHHHHH CS
  ABC_ATPase 243 pkGvtlIvGggfhGKsTLLe 262
                 p ++ ++ G++  GKsTL++
  CTQ28810.1  29 PGKILTLLGPNGAGKSTLVR 48 
                 4459999***********97 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0011
                 -HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE CS
  ABC_ATPase 375 plvdrvrelykklgvstilvvggsgdyldvAdtvilmeeykpkd 418
                 +l d++++l+++l+  +++v+  +   ++  d+v+ ++++ +  
  CTQ28810.1 158 ALYDLINQLRHELDCAVLMVSHDLHLVMAKTDEVLCLNQHICCS 201
                 6889************************************8865 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00027      0.29      38      65 ..      23      50 ..      16      57 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00027
       Rad17 38 dvLesrkkriLLisGPsGCgkstvvkvL 65
                 +L   + +iL + GP G gkst v+v+
  CTQ28810.1 23 ISLALTPGKILTLLGPNGAGKSTLVRVV 50
                567778899****************985 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0002      0.21      16      49 ..      22      53 ..      12     127 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
      AAA_27 16 drsldfsaeeadlhliyGpNEAGKstalrAisdl 49
                d sl++     ++  ++GpN AGKst++r +  l
  CTQ28810.1 22 DISLALT--PGKILTLLGPNGAGKSTLVRVVLGL 53
                5566665..45556678**********9988766 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00036      0.38      89     108 ..      31      50 ..      27      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00036
    AAA_PrkA  89 qilyllGPvggGksslverl 108
                 +il llGP g+Gks+lv  +
  CTQ28810.1  31 KILTLLGPNGAGKSTLVRVV 50 
                 79**************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2043.74
//
Query:       CTQ28811.1  [L=261]
Description: zinc transporter subunit: membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-87  292.1  26.3    4.2e-87  291.9  26.3    1.0  1  ABC-3     ABC 3 transport family
    9.2e-06   24.9  28.2    9.5e-06   24.8  27.5    1.3  1  FecCD     FecCD transport family
  ------ inclusion threshold ------
        7.4    7.3  10.8        5.9    7.6   0.7    2.9  3  DUF883    Bacterial protein of unknown function (DUF883)


Domain annotation for each model (and alignments):
>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.9  26.3   7.1e-91   4.2e-87       1     257 [.       1     257 [.       1     258 [. 0.99

  Alignments for each domain:
  == domain 1  score: 291.9 bits;  conditional E-value: 7.1e-91
       ABC-3   1 qyeflqrallasilvslacallgsfvvlrrqsllgdalsHaalpGvalayllgvnlllgailvgliaavalellkrktklkedtaigivlsvflalglv 99 
                 ++e+l++ +la++++++a+++lgsfvv+rr+s++gd+l+Ha+l Gva+++ll+vn+++++i+v+l++a +l++l+++ +l++dt++gi+++++l+lglv
  CTQ28811.1   1 MIELLLPGWLAGMMLACAAGPLGSFVVWRRMSYFGDTLAHASLLGVAFGLLLNVNPFYAVIVVTLLLAGGLVWLEKRPHLAIDTLLGIMAHSALSLGLV 99 
                 57899********************************************************************************************** PP

       ABC-3 100 lvslikkskvdldsyLfGniltisqedliliaiieavvllllllfwkelllitfdeelAkveglsvkllkllllalialavvvalqavGviLviallii 198
                 +vsl+++++vdl++yLfG++l+++ +dli ia  +++v+ +ll++w++ll++t++++lA+v+g++++++klll++++al++ va+++vG++++++llii
  CTQ28811.1 100 VVSLMSNVRVDLMAYLFGDLLAVTPQDLIAIATGVVIVIGILLWQWRNLLAMTISPDLAFVDGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLII 198
                 *************************************************************************************************** PP

       ABC-3 199 PaatArrltrslesllivAillglvsvvaGlllSyyldlatGavivlvatllfllallv 257
                 PaatArr++r++e++++vA+ +g+++v+ Gl++S+++d+++G+++vl+a++lf+l++ +
  CTQ28811.1 199 PAATARRFARTPEQMAAVAVGVGMLAVTGGLTFSAFYDTPAGPSVVLCAAVLFILSMTK 257
                 ********************************************************975 PP

>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8  27.5   1.6e-09   9.5e-06     101     306 ..      53     251 ..      32     257 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.6e-09
       FecCD 101 falplaaf.lgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllar 198
                 +  p+ a+ +  ll ++ +++l  kr +       L Gi+ ++ ls    ++ l+  ++   +++ +l+G+l  ++ ++++ ++  +++++ +ll+  r
  CTQ28811.1  53 NVNPFYAViVVTLLLAGGLVWLE-KRPHLAID--TLLGIMAHSALSLGLVVVSLM--SNVRVDLMAYLFGDLLAVTPQDLIAIATGVVIVIGILLWQWR 146
                 33333333133333344444455.44444433..577988888777666666666..358899************************************ PP

       FecCD 199 kldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGL.ivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgi 296
                 +l +++++ ++A   Gv+ +rv+lll+l++al ++va+ +vG +    L i+P    + + ++ +++  +++ +G+l ++   +++ ++ +p    +g 
  CTQ28811.1 147 NLLAMTISPDLAFVDGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLlIIPAATARRFARTPEQMAAVAVGVGMLAVTGGLTFSAFYDTP----AGP 241
                 ******************************************99888853788888888888999999999999999999999988877544....444 PP

       FecCD 297 vtaliGapff 306
                  + l  a++f
  CTQ28811.1 242 SVVLCAAVLF 251
                 4444444444 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       1.5   8.9e+03      77      91 ..      38      52 ..      36      53 .. 0.75
   2 ?    7.6   0.7   0.00099       5.9      72      91 ..     123     142 ..     112     144 .. 0.89
   3 ?    5.9   0.4    0.0033        20      65      87 ..     202     224 ..     198     227 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.5
      DUF883 77 vGiAagvGlllGlLl 91
                ++ A  +G+ +GlLl
  CTQ28811.1 38 LAHASLLGVAFGLLL 52
                666777899999997 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00099
      DUF883  72 nPwqavGiAagvGlllGlLl 91 
                  P   ++iA+gv +++G+Ll
  CTQ28811.1 123 TPQDLIAIATGVVIVIGILL 142
                 57888*************97 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0033
      DUF883  65 addyVrenPwqavGiAagvGlll 87 
                 + +   + P q +++A+gvG+l+
  CTQ28811.1 202 TARRFARTPEQMAAVAVGVGMLA 224
                 55666789************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       972  (0.0542138); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 1989.43
//
Query:       CTQ28812.1  [L=336]
Description: holliday junction helicase, subunit B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-82  273.6   0.0    5.7e-82  273.2   0.0    1.2  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    5.2e-32  109.4   0.6    9.5e-32  108.6   0.6    1.5  1  AAA_lid_4        RuvB AAA lid domain
    1.7e-25   88.7   0.0    2.9e-25   87.9   0.0    1.4  1  RuvB_C           RuvB C-terminal winged helix domain
    5.5e-20   72.1   0.0      2e-19   70.4   0.0    1.9  2  AAA              ATPase family associated with various cellul
    1.9e-08   34.4   0.0     0.0007   19.6   0.0    2.3  2  AAA_5            AAA domain (dynein-related subfamily)
    7.2e-05   23.1   0.1      0.028   14.7   0.0    2.5  2  AAA_22           AAA domain
    0.00012   21.5   0.2      0.046   13.1   0.0    2.5  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00022   21.1   0.0       0.15   11.9   0.0    2.4  2  AAA_3            ATPase family associated with various cellul
    0.00053   20.0   0.0     0.0008   19.4   0.0    1.2  1  Rad17            Rad17 P-loop domain
     0.0009   19.0   0.0       0.88    9.3   0.0    2.2  2  Sigma54_activat  Sigma-54 interaction domain
     0.0012   18.1   0.3     0.0089   15.3   0.0    2.1  2  TIP49            TIP49 P-loop domain
     0.0025   18.2   0.3       0.14   12.5   0.0    2.6  2  AAA_16           AAA ATPase domain
     0.0045   17.0   0.0      0.009   16.0   0.0    1.5  1  AAA_14           AAA domain
     0.0056   17.2   0.0       0.02   15.4   0.0    1.9  2  AAA_18           AAA domain
  ------ inclusion threshold ------
      0.017   15.4   0.6      0.087   13.1   0.4    2.2  2  DUF4129          Domain of unknown function (DUF4129)
      0.021   14.8   0.2       0.16   11.9   0.0    2.1  2  NTPase_1         NTPase
      0.032   14.6   0.0      0.057   13.8   0.0    1.4  1  RNA_helicase     RNA helicase
      0.032   13.4   0.0          2    7.5   0.0    2.1  2  DUF815           Protein of unknown function (DUF815)
      0.044   13.6   0.0       0.32   10.8   0.0    2.1  2  Bac_DnaA         Bacterial dnaA  protein
      0.045   13.8   0.0      0.082   12.9   0.0    1.3  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.047   13.4   0.0       0.12   12.0   0.0    1.7  1  AAA_24           AAA domain
      0.052   12.6   0.0        3.7    6.6   0.0    2.2  2  MCM              MCM P-loop domain
       0.07   13.6   0.0       0.15   12.5   0.0    1.6  1  AAA_17           AAA domain
       0.07   12.3   0.0       0.14   11.3   0.0    1.4  1  NB-ARC           NB-ARC domain
      0.078   12.7   0.5       0.39   10.4   0.1    2.3  2  IstB_IS21        IstB-like ATP binding protein
       0.12   12.5   0.0       0.54   10.4   0.0    2.0  2  AAA_33           AAA domain
       0.14   12.5   0.5        2.4    8.5   0.1    2.3  2  AAA_19           AAA domain
       0.14   11.6   0.0        2.8    7.3   0.0    2.2  2  TniB             Bacterial TniB protein
       0.14   12.1   0.0       0.34   10.9   0.0    1.6  1  HTH_15           Helix-turn-helix domain of alkylmercury lyas
       0.15   12.3   0.3       0.36   11.1   0.0    1.7  1  AAA_28           AAA domain
       0.19   11.9   0.0       0.34   11.0   0.0    1.4  1  Sigma54_activ_2  Sigma-54 interaction domain
       0.19   12.3   0.0       0.33   11.5   0.0    1.4  1  ABC_tran         ABC transporter


Domain annotation for each model (and alignments):
>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.2   0.0     1e-84   5.7e-82       1     159 []      23     181 ..      23     181 .. 0.99

  Alignments for each domain:
  == domain 1  score: 273.2 bits;  conditional E-value: 1e-84
      RuvB_N   1 lrPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaalltnleekdvlfideihrlsra 99 
                 +rPk l+ey+gq +v+++++ifi+aak r++aldh+l++GpPGlGkttla+i+a+e+gv+l++tsgPvlekagdlaa+ltnle++dvlfideihrls++
  CTQ28812.1  23 IRPKLLAEYVGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPV 121
                 7************************************************************************************************** PP

      RuvB_N 100 veevlysamedfrldivigkGpsarsikldlpkftlvgattragllssPlrdrfgivarl 159
                 veevly+amed++ldi+ig+Gp+arsik+dlp+ftl+gattrag l+sPlrdrfgiv+rl
  CTQ28812.1 122 VEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRL 181
                 *********************************************************997 PP

>> AAA_lid_4  RuvB AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.6   1.7e-34   9.5e-32       1      74 []     184     257 ..     184     257 .. 0.99

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 1.7e-34
   AAA_lid_4   1 YeeeeLeeivkrsakilgveieeegaaeiarRsRGTPRianrLLrRvrDfaqvkgdgkitkevakkaLellevd 74 
                 Y+  +L++iv+rsa+ +g+e+++ega e+arRsRGTPRianrLLrRvrDfa+v++dg+i++++a++aL++l+vd
  CTQ28812.1 184 YQIPDLQHIVSRSARHMGLEMSDEGALEVARRSRGTPRIANRLLRRVRDFAEVRHDGTISADIAAQALDMLNVD 257
                 8899*********************************************************************9 PP

>> RuvB_C  RuvB C-terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   5.2e-28   2.9e-25       2      71 ..     259     328 ..     258     329 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 5.2e-28
                 T---HHHHHHHHHHHHT.TT--B-HHHHHHHTT--HHHHHHTTHHHHHHTTSEEEETTEEEE-HHHHHHH CS
      RuvB_C   2 lGLdeldikyLkllkekfkggpvglktlaailgeeketiedviEPyLlkeglIertsrGRilTkkglkyl 71 
                 +G+d +d+k+L ++++kf ggpvgl++laa++gee+etiedv EPyL+++g+++rt+rGR++T ++++++
  CTQ28812.1 259 EGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVRAWNHF 328
                 6*******************************************************************98 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       7.2     4e+03      66      95 ..       3      33 ..       3      54 .. 0.68
   2 !   70.4   0.0   3.5e-22     2e-19       1     130 [.      58     181 ..      58     183 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 7.2
                TGGGHHHHH.TTCCCHHHHHHHHHHHHHHHH CS
         AAA 66 Eidalaksr.sgseseeeervvnqLlteldg 95
                E+d+l++++ sg e+  ++ + ++Ll+e  g
  CTQ28812.1  3 EADRLVSADsSGFEEAADRAIRPKLLAEYVG 33
                7788888886666777777778888777554 PP

  == domain 2  score: 70.4 bits;  conditional E-value: 3.5e-22
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +l++GppG GKT+la+ va+e+gv++ ++sg+ l       ++ ++++++++++ +    +lfiDEi++l +              ++L++++++++ +
  CTQ28812.1  58 LLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLE------KAGDLAAMLTNLEPH---DVLFIDEIHRLSPVV-----------EEVLYPAMEDYQLD 136
                 699*****************************999......9********998655...7**********8888...........9************* PP

                 ...............SSTEEEEEEESSGGGSTHHHHSTTSSEEEET CS
         AAA 100 ...............eskvivigatnrpdkldpallrgRfdrkiei 130
                                  ++++igat+r  +l+++l+ +Rf +++++
  CTQ28812.1 137 imigegpaarsikidLPPFTLIGATTRAGSLTSPLR-DRFGIVQRL 181
                 ***************888******************.***998876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1    0.0002      0.11       1      29 [.      57      85 ..      57      90 .. 0.85
   2 !   19.6   0.0   1.2e-06    0.0007      62     138 .]     103     175 ..      91     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0002
                EEEEE--SSSSHHHHHHHGGGGBS--EEE CS
       AAA_5  1 dvlLvGppGtgKselaerlaaalnrevey 29
                ++l+ GppG gK++la  +a  ++ ++ +
  CTQ28812.1 57 HLLIFGPPGLGKTTLANIVANEMGVNLRT 85
                799**************999988766655 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 1.2e-06
                 ---G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---.......-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5  62 aaregeilvlDEveraesevlnsLlslleerrllleeggelvkakndd.llerfrviatanpldrslnelspalrsRf 138
                 + +  ++l++DE++r+++ v ++L + +e+ +l+++ g +    +  +  l++f++i+++ ++     +l+++lr+Rf
  CTQ28812.1 103 NLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSI-KiDLPPFTLIGATTRAG----SLTSPLRDRF 175
                 555779******************************9999996665.335666***********....9999*****9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.1e-05     0.028       7      28 ..      57      78 ..      54      86 .. 0.89
   2 ?    6.0   0.0     0.024        13      91     106 ..     103     123 ..      76     159 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.1e-05
      AAA_22  7 ilvvtGesGtGKTtllrrlleq 28
                +l+++G++G GKTtl++ ++++
  CTQ28812.1 57 HLLIFGPPGLGKTTLANIVANE 78
                799*************988775 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.024
      AAA_22  91 v...ielliiDEaqhlrs...e 106
                     + +l iDE+++l s   e
  CTQ28812.1 103 NlepHDVLFIDEIHRL-SpvvE 123
                 2445789*********.63333 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   8.3e-05     0.046       6      42 ..      32      75 ..      28      84 .. 0.66
   2 ?    5.7   0.0     0.015       8.4     107     138 ..     107     138 ..     101     152 .. 0.89
   3 ?   -3.5   0.0       9.7   5.5e+03     184     196 ..     166     178 ..     159     183 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.3e-05
  Mg_chelatase  6 kGqeeakralei..aaa...Gg..HnlllvGppGsGKtmlakrl 42
                  +Gq + +  +ei   aa   G    +ll++GppG GKt la+ +
    CTQ28812.1 32 VGQPQVRSQMEIfiQAAklrGDalDHLLIFGPPGLGKTTLANIV 75
                  56666666666522122222222269***************876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.015
  Mg_chelatase 107 nGvLfLDElpefkrkvlevLRePledgevtis 138
                   + vLf+DE+  ++  v evL   +ed ++ i+
    CTQ28812.1 107 HDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIM 138
                   679***********************998875 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 9.7
  Mg_chelatase 184 klsgplldRidlq 196
                    l  pl dR+ + 
    CTQ28812.1 166 SLTSPLRDRFGIV 178
                   6889999*99886 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00026      0.15       1      28 [.      57      84 ..      57      89 .. 0.93
   2 ?    6.7   0.0     0.011       6.1      64      93 ..     108     137 ..     101     150 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00026
       AAA_3  1 hvllegvPGlaktllvkalakaldlefk 28
                h+l+ g PGl+kt+l++ +a+ ++++++
  CTQ28812.1 57 HLLIFGPPGLGKTTLANIVANEMGVNLR 84
                99********************999875 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.011
       AAA_3  64 nllladeinrappktqsalleameerqvtv 93 
                 ++l+ dei r +p ++  l  ame+ q+ +
  CTQ28812.1 108 DVLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137
                 7999*********************99865 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.4e-06    0.0008      33      83 ..      43      93 ..      25     107 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.4e-06
       Rad17 33 ewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklrewlnpvslk 83
                 +++a  L       LLi GP+G gk+t  ++++ e+g++lr  + pv+ k
  CTQ28812.1 43 IFIQAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEK 93
                556666777666678******************************999855 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0047       2.6       8      44 ..      41      77 ..      34     103 .. 0.78
   2 !    9.3   0.0    0.0016      0.88      96     127 ..     109     141 ..     101     186 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0047
                     HHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat  8 lkelleqikkvaktdlsvlitGesGtGKellaraihe 44
                     ++  ++ +k   +   ++li G  G GK++la+ + +
       CTQ28812.1 41 MEIFIQAAKLRGDALDHLLIFGPPGLGKTTLANIVAN 77
                     444555555555556899**************99876 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0016
                      EEEEETGGGS-HHHHHHHHHHHHHSEEES.BTS CS
  Sigma54_activat  96 tlfLDeigelplelQekLlrvlqegever.vGs 127
                      +lf+Dei++l++ + e L  ++++ ++   +G+
       CTQ28812.1 109 VLFIDEIHRLSPVVEEVLYPAMEDYQLDImIGE 141
                      8*********************99988741454 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.6e-05    0.0089      25      77 ..      30      82 ..      11      88 .. 0.85
   2 ?    0.3   0.1      0.57   3.2e+02     281     291 ..     109     119 ..     106     139 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 25 glvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelged 77
                  vGq + r  + ++++  k +  a   +L+ Gp+g Gkt la  +++e+g +
  CTQ28812.1 30 EYVGQPQVRSQMEIFIQAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVN 82
                579***********998888777777889********************9965 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.57
                 XXXXXXXXXXX CS
       TIP49 281 vlfiDevhmlD 291
                 vlfiDe+h l 
  CTQ28812.1 109 VLFIDEIHRLS 119
                 9*******986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00025      0.14      22      46 ..      52      77 ..      32      87 .. 0.82
   2 ?    2.7   0.0      0.25   1.4e+02     126     157 ..     100     128 ..      89     137 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00025
      AAA_16 22 grp.elvllsGesGvGKsslvrellr 46
                g+    +l+ G++G GK++l++ +++
  CTQ28812.1 52 GDAlDHLLIFGPPGLGKTTLANIVAN 77
                4445789**************98876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.25
      AAA_16 126 llallsrderplvlvlDdlqwadeaslqllaa 157
                 +l   ++ e+  vl++D+++++ +   ++l+ 
  CTQ28812.1 100 ML---TNLEPHDVLFIDEIHRLSPVVEEVLYP 128
                 33...33344469*********9988888775 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.6e-05     0.009       5      96 ..      58     138 ..      56     149 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.6e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpe.wekalkslvdegknldvi 96 
                 l+i G+   GKTtl++ +++e          +nl + +   l++  +l  ++ ++ +   + +lf+DEi++++  +e++l   ++++ +ld++
  CTQ28812.1  58 LLIFGPPGLGKTTLANIVANEMG--------VNLRTTSGPVLEKAGDLAAMLTNL-E--PHDVLFIDEIHRLSPvVEEVLYPAMEDY-QLDIM 138
                 6899**********877775555........666665554444444566666665.4..4789*******98661455555555555.66766 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.6e-05      0.02       2      29 ..      59      84 ..      58     132 .. 0.77
   2 ?   -1.2   0.0       5.1   2.8e+03      23      64 ..     232     276 ..     218     297 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.6e-05
      AAA_18  2 lltGtpGvGKttlakeLskrlgfgvnlr 29
                l+ G+pG GKttla+ +++++  gvnlr
  CTQ28812.1 59 LIFGPPGLGKTTLANIVANEM--GVNLR 84
                699**************9999..55544 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 5.1
      AAA_18  23 gf......gvnlrdvakenglllevdpealdeskrldedkldklldal 64 
                  f      g+++ d+a++    l vd+e    ++ +d++ l +++d++
  CTQ28812.1 232 DFaevrhdGTISADIAAQALDMLNVDAE---GFDYMDRKLLLAVIDKF 276
                 4455566677777777777777777777...77777777777777766 PP

>> DUF4129  Domain of unknown function (DUF4129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0         4   2.2e+03      37      51 ..     113     127 ..      86     146 .. 0.68
   2 ?   13.1   0.4   0.00015     0.087       3      67 ..     190     253 ..     189     255 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 4
     DUF4129  37 aalaalaelfeearY 51 
                 +++++l  ++ee++Y
  CTQ28812.1 113 DEIHRLSPVVEEVLY 127
                 378889999999999 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00015
     DUF4129   3 rallraLaer.gldrrpgeTprEyarrvriapspaaalaalaelfeearYGgrpasaeeyrrlvea 67 
                 + ++ + a++ gl+   +e + E+arr r +p  a +l + ++ f e+r  ++++sa+ ++++++ 
  CTQ28812.1 190 QHIVSRSARHmGLEMS-DEGALEVARRSRGTPRIANRLLRRVRDFAEVRH-DGTISADIAAQALDM 253
                 6788888999888876.89*******************************.99*****99999885 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00028      0.16       1      23 [.      57      79 ..      57      94 .. 0.84
   2 ?    0.4   0.0      0.96   5.4e+02      91     105 ..     102     116 ..      88     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00028
                EEEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvlell 23
                +++i GppG GKtTl + v++++
  CTQ28812.1 57 HLLIFGPPGLGKTTLANIVANEM 79
                67899*************99988 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.96
                 HHHHHH-EEEE---S CS
    NTPase_1  91 kalseadviviDEiG 105
                 + l+  dv+ iDEi 
  CTQ28812.1 102 TNLEPHDVLFIDEIH 116
                 346889*******95 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0    0.0001     0.057       2      57 ..      59     114 ..      58     131 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.0001
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvys.rnpeddfwdgYtgqevvvidD 57 
                   +++Gp+g GK+tla+ +a+++  +l +++ + v    +    ++ + + ++v+ id+
    CTQ28812.1  59 LIFGPPGLGKTTLANIVANEMGVNLRTTS-GPVLEkAGDLAAMLTNLEPHDVLFIDE 114
                   79****************99997774444.333332444444455555555555555 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0036         2      47     115 ..      49     114 ..      23     117 .. 0.82
   2 ?    3.7   0.0     0.053        30     182     227 ..     171     212 ..     167     232 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0036
      DUF815  47 fleglpannvLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellrerperfilfvDD 115
                  l+g +  ++L++G  G GK +l   + ne+   g+ l   +   l++  +l ++l + + + +lf+D 
  CTQ28812.1  49 KLRGDALDHLLIFGPPGLGKTTLANIVANEM---GVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDE 114
                 47889999***************99998876...55666778888999999999999999999999986 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.053
      DUF815 182 LsdRFGlwlgFykldqeeYleiveklakklglelekeeleeeAlew 227
                 L dRFG++   +  +  +  +iv++ a+++gle+++e     Ale 
  CTQ28812.1 171 LRDRFGIVQRLEFYQIPDLQHIVSRSARHMGLEMSDEG----ALEV 212
                 78*****85555555567779************99744....4433 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00057      0.32      25      59 ..      46      80 ..      29      87 .. 0.83
   2 ?   -0.1   0.0       1.2   6.8e+02      93     110 ..     102     119 ..      91     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00057
                HHHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHH CS
    Bac_DnaA 25 kvaeapgkkynPlfiygevGlGktHLlkaignevl 59
                + a+  g + + l+i+g+ GlGkt L + ++ne+ 
  CTQ28812.1 46 QAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG 80
                567778889999****************9999875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.2
                 HHHTT-SEEEEE-GGGGT CS
    Bac_DnaA  93 eklrkvDvLliDDiqfla 110
                  +l   DvL iD+i+ l+
  CTQ28812.1 102 TNLEPHDVLFIDEIHRLS 119
                 567778********9885 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00015     0.082      13      50 ..      49      87 ..      36      90 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00015
                HHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT--.---- CS
        TsaE 13 klakalgdvilLeGdLGaGKTtlvrglakalgve.evkS 50
                kl   + d +l+ G+ G GKTtl+  +a+++gv+ + +S
  CTQ28812.1 49 KLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNlRTTS 87
                333333556999*********************988777 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00022      0.12       5      22 ..      58      75 ..      56     127 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00022
      AAA_24  5 iliyGpsgiGKTtlakel 22
                +li+Gp+g GKTtla+  
  CTQ28812.1 58 LLIFGPPGLGKTTLANIV 75
                69************9866 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0065       3.7      51      87 ..      47      85 ..      35     105 .. 0.73
   2 ?    3.8   0.0     0.046        26     124     152 ..     109     137 ..      90     141 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0065
                SSBBCSS-..EEEEEESSTSTHHHHHHHHHHHSSSEEEE CS
         MCM 51 ktklrgdi..nvllvgdpgtaKsqlLkyveklapravyt 87
                 +klrgd   ++l+ g pg++K++l + v++ +  +  t
  CTQ28812.1 47 AAKLRGDAldHLLIFGPPGLGKTTLANIVANEMGVNLRT 85
                56889986669***************9998877666543 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.046
                 EEEEESGGGSTCHHHHHHHHHHHHSEEEE CS
         MCM 124 vcciDefdkmkeedrsalhEamEqqtisi 152
                 v+ iDe+ + +   +++l+ amE+ ++ i
  CTQ28812.1 109 VLFIDEIHRLSPVVEEVLYPAMEDYQLDI 137
                 899********************999887 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00026      0.15       1      27 [.      61      87 ..      61     113 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00026
                EE-TTSSHHHHHHHHHHHHTEEEEEHH CS
      AAA_17  1 lGgPGsGKgtqceklvekygfthlsaG 27
                +G+PG GK+t+++ ++ ++g+   +++
  CTQ28812.1 61 FGPPGLGKTTLANIVANEMGVNLRTTS 87
                6******************98876664 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00025      0.14      16      43 ..      53      78 ..      43      84 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
                TTSCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 16 delqslvvalvGmgGvGKttlakqilnk 43
                d l+   + + G +G+GKttla+ + n+
  CTQ28812.1 53 DALD--HLLIFGPPGLGKTTLANIVANE 78
                4555..7899************999887 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00069      0.39      48      69 ..      56      77 ..      38     132 .. 0.84
   2 ?   -2.3   0.0       5.5   3.1e+03      93     136 ..     236     275 ..     224     279 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00069
   IstB_IS21 48 enivllGpsGvGKshlaialgv 69
                + ++++Gp+G GK+ la  ++ 
  CTQ28812.1 56 DHLLIFGPPGLGKTTLANIVAN 77
                6789************987665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.5
   IstB_IS21  93 arrdgklaralkrllkvdllilDdlgllpldqaeaellfeviek 136
                  r+dg ++  +++ ++ d+l +D  g+      +++ll+ vi+k
  CTQ28812.1 236 VRHDGTISADIAA-QALDMLNVDAEGFD---YMDRKLLLAVIDK 275
                 5555555555543.45566666666654...4446777777776 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00096      0.54       3      24 ..      59      80 ..      58     108 .. 0.85
   2 ?   -1.7   0.0       5.2   2.9e+03      72      96 ..     303     329 ..     295     331 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00096
      AAA_33  3 llvGlpGsGKstlaerllkklg 24
                l+ G+pG GK+tla  ++++ g
  CTQ28812.1 59 LIFGPPGLGKTTLANIVANEMG 80
                678***********98886655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 5.2
      AAA_33  72 nvildatnlsr..rerarflklarrlg 96 
                 ++++ +++l+r  r r++ +++++++g
  CTQ28812.1 303 PYLIQQGFLQRtpRGRMATVRAWNHFG 329
                 688999999973366667777777666 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0042       2.4      11      34 ..      56      79 ..      46      91 .. 0.80
   2 ?    2.0   0.0      0.43   2.4e+02      98     125 ..     102     129 ..      82     141 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0042
      AAA_19 11 kvllvtaGpGtGKTrvlkhivall 34
                ++ll+ ++pG GKT++ + + +++
  CTQ28812.1 56 DHLLIFGPPGLGKTTLANIVANEM 79
                5789**********9877766655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.43
      AAA_19  98 kklqeeellivDEfqdvdelqyrLlkal 125
                 ++l+ +++l++DE+  ++++  ++l   
  CTQ28812.1 102 TNLEPHDVLFIDEIHRLSPVVEEVLYPA 129
                 4576777**********97777766544 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.005       2.8      17      54 ..      35      74 ..      21      90 .. 0.72
   2 ?    2.1   0.0       0.2   1.1e+02     107     131 ..      93     118 ..      77     122 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.005
        TniB 17 keilerLeeLleypk..rkrmpnlllvGdsnnGKtmivek 54
                 ++ +++e  ++++k   +   +ll++G++  GKt++++ 
  CTQ28812.1 35 PQVRSQMEIFIQAAKlrGDALDHLLIFGPPGLGKTTLANI 74
                55556666666665442566799*************9875 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.2
        TniB 107 leqqvlrllrelkvr.vLiiDEihnl 131
                 +  +  ++l +l+++ vL iDEih+l
  CTQ28812.1  93 KAGDLAAMLTNLEPHdVLFIDEIHRL 118
                 55555667777776449*******97 PP

>> HTH_15  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00061      0.34      33      57 ..     278     302 ..     262     304 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00061
      HTH_15  33 GepVtveeLAaatgrsveevrqaLa 57 
                 G pV +++LAaa g   e ++++L+
  CTQ28812.1 278 GGPVGLDNLAAAIGEERETIEDVLE 302
                 88*********************97 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00064      0.36       3      24 ..      59      81 ..      57      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00064
      AAA_28  3 vitGgestGKTtlleaLaar.gy 24
                 i+G+++ GKTtl++  a++ g+
  CTQ28812.1 59 LIFGPPGLGKTTLANIVANEmGV 81
                699************99976554 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00061      0.34      23      85 ..      57     122 ..      37     136 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00061
                      -EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH..-HHHHHHHT.TTSEEEEEE-TT--HHH CS
  Sigma54_activ_2  23 pvfltGekGsgkelvArlLhknsgpwleifvverlak..lpldlleqa.kggtLylkdiadlskae 85 
                       +++ G++G+gk++ A++ +++ g +l  +    l k    + +l ++    +L++ +i+ ls+  
       CTQ28812.1  57 HLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKagDLAAMLTNLePHDVLFIDEIHRLSPVV 122
                      589******************999887776443333222445555554166899*****9999865 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00058      0.33      14      35 ..      58      79 ..      48     115 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00058
                EEEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagll 35
                + i+G+ G GK+tL++++a+++
  CTQ28812.1 58 LLIFGPPGLGKTTLANIVANEM 79
                689**************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 2503.24
//
Query:       CTQ28813.1  [L=203]
Description: component of RuvABC resolvasome, regulatory subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-20   73.4   0.0    4.3e-20   71.6   0.0    1.9  2  RuvA_N          RuvA N terminal domain
    1.2e-16   61.0   0.3    2.9e-16   59.8   0.3    1.7  1  HHH_5           Helix-hairpin-helix domain
    8.4e-15   55.0   1.6    8.4e-15   55.0   1.6    1.9  2  RuvA_C          RuvA, C-terminal domain
    3.3e-08   33.0   0.2    0.00081   19.1   0.1    2.5  2  HHH             Helix-hairpin-helix motif
     0.0021   18.3   0.1      0.023   15.0   0.0    2.4  2  IMS_HHH         IMS family HHH motif
     0.0085   16.3   0.2       0.51   10.6   0.2    2.3  2  HHH_3           Helix-hairpin-helix motif
     0.0089   16.3   0.0       0.36   11.2   0.0    2.4  2  Transposase_20  Transposase IS116/IS110/IS902 family
  ------ inclusion threshold ------
       0.01   16.2   0.1       0.27   11.6   0.0    2.4  2  HHH_8           Helix-hairpin-helix domain
      0.017   15.2   0.0        6.7    6.9   0.0    2.6  3  HHH_2           Helix-hairpin-helix motif
      0.083   12.8   0.1       0.23   11.4   0.0    1.7  2  LcrG            LcrG protein
        0.1   13.2   0.2        1.5    9.4   0.0    2.3  2  5_3_exonuc      5'-3' exonuclease, C-terminal SAM fold
       0.12   12.3   0.0        7.9    6.4   0.0    2.9  4  DUF3173         Domain of unknown function (DUF3173)
       0.15   12.2   0.6        5.4    7.3   0.1    2.4  2  FeS_assembly_P  Iron-sulfur cluster assembly protein


Domain annotation for each model (and alignments):
>> RuvA_N  RuvA N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   3.1e-23   4.3e-20       1      60 []       1      62 [.       1      62 [. 0.98
   2 ?   -1.3   0.0       1.8   2.4e+03      19      31 ..      76      88 ..      70     110 .. 0.69

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 3.1e-23
                -EEEEEEEEEEESSCEEEEEETTEEEEEEE-HHHHCC..-TTSEEEEEEEEEEETTEEEEEE CS
      RuvA_N  1 MIaylkGkvvekepdsivvevggvGYevfvplstlss..kegeevklythlivrEdalsLYG 60
                MI++l+G+++ek+p  +++e+ gvGYev++p++++++  + g+e+ ++th++vrEda+ LYG
  CTQ28813.1  1 MIGRLRGIILEKQPPLVLLETAGVGYEVHMPMTCFYElpEAGQEAIVFTHFVVREDAQLLYG 62
                **************************************989***99***************9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.8
                EEETTEEEEEEE- CS
      RuvA_N 19 vevggvGYevfvp 31
                + ++gvG ++ + 
  CTQ28813.1 76 IKTNGVGPKLALA 88
                7789999776655 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.3   2.1e-19   2.9e-16       1      57 []      72     130 ..      72     130 .. 0.86

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 2.1e-19
                 -HHHHTSTT--HHHHHHHHTTT--SHHHHHHS....-HHHHHTSTTS-HHHHHHHHHHHHH CS
       HHH_5   1 feeLlsvsGiGpktAlallsaGiesvedlaaa....dveeLakipGiGkktAeriilelkd 57 
                 f+eL++ +G+Gpk+Ala+ls+   s +++++a    +v+ L k+pGiGkktAer+i e kd
  CTQ28813.1  72 FKELIKTNGVGPKLALAILSG--MSAQQFVNAvereEVASLVKLPGIGKKTAERLIVEMKD 130
                 89*******************..76665555433338999******************997 PP

>> RuvA_C  RuvA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       5.6   7.7e+03      20      31 ..      95     106 ..      95     113 .. 0.64
   2 !   55.0   1.6   6.1e-18   8.4e-15       2      45 ..     159     201 ..     158     203 .] 0.95

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.6
                 HHHHHHHHHC-T CS
      RuvA_C  20 aekAvakvlanp 31 
                 a++ v++v++++
  CTQ28813.1  95 AQQFVNAVEREE 106
                 788888886433 PP

  == domain 2  score: 55.0 bits;  conditional E-value: 6.1e-18
                 HHHHHHHHHHHCTS-HHHHHHHHHHHHC-TTS-HHHHHHHHHCC CS
      RuvA_C   2 aledaveALlaLGYkekeaekAvakvlanpgasveelIraALkl 45 
                 a ++av+AL+aLGYk++ea ++v+k++  p+a++e+lIr+AL++
  CTQ28813.1 159 AEQEAVAALVALGYKPQEASRMVSKIA-RPDANSETLIREALRA 201
                 679************************.**************96 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00017      0.23      11      29 ..      73      91 ..      64      92 .. 0.89
   2 !   19.1   0.1   5.8e-07   0.00081      11      27 ..     108     124 ..     104     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
                HHHHTSTT-SHHHHHHHHH CS
         HHH 11 eeLlalPGVGpktAeaIls 29
                +eL +  GVGpk A aIls
  CTQ28813.1 73 KELIKTNGVGPKLALAILS 91
                6888889**********98 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 5.8e-07
                 HHHHTSTT-SHHHHHHH CS
         HHH  11 eeLlalPGVGpktAeaI 27 
                 + L++lPG+G+ktAe+ 
  CTQ28813.1 108 ASLVKLPGIGKKTAERL 124
                 679***********986 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.2   1.6e+03      18      24 ..      80      86 ..      79      90 .. 0.90
   2 !   15.0   0.0   1.7e-05     0.023      13      28 ..     110     125 ..     106     128 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.2
     IMS_HHH 18 GiGgklg 24
                G+G+kl+
  CTQ28813.1 80 GVGPKLA 86
                9****97 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.7e-05
     IMS_HHH  13 itkipGiGgklgekLe 28 
                 + k+pGiG+k++e+L 
  CTQ28813.1 110 LVKLPGIGKKTAERLI 125
                 679***********85 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.2   0.00037      0.51      15      60 ..      74     124 ..      71     125 .. 0.52
   2 !   10.0   0.0   0.00059      0.81      13      31 ..     107     125 ..     105     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00037
       HHH_3  15 eLqklpGlgpklAknIvayReknGpfks.....reeLlkvkglgpktfeql 60 
                 eL k +G+gpklA +I+    +++ ++      +  L+k +g+g+kt e+l
  CTQ28813.1  74 ELIKTNGVGPKLALAILSGMSAQQFVNAvereeVASLVKLPGIGKKTAERL 124
                 555666666666666666554443332211111345677777777776664 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00059
       HHH_3  13 aeeLqklpGlgpklAknIv 31 
                 ++ L klpG+g+k+A++++
  CTQ28813.1 107 VASLVKLPGIGKKTAERLI 125
                 5679999999999999965 PP

>> Transposase_20  Transposase IS116/IS110/IS902 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.12   1.7e+02       6      28 ..      77      98 ..      73     106 .. 0.78
   2 !   11.2   0.0   0.00026      0.36       4      28 ..     110     132 ..     107     135 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.12
  Transposase_20  6 sipGiGpvtaaallaeigdlrrf 28
                       G+Gp +a+a+l+ +   ++f
      CTQ28813.1 77 KTNGVGPKLALAILSGMSA-QQF 98
                    568***********98855.355 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00026
  Transposase_20   4 LesipGiGpvtaaallaeigdlrrf 28 
                     L  +pGiG+ ta +l++e+ d  rf
      CTQ28813.1 110 LVKLPGIGKKTAERLIVEMKD--RF 132
                     6689***************88..45 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.24   3.3e+02      46      63 ..      73      89 ..      65      91 .. 0.79
   2 ?   11.6   0.0    0.0002      0.27      41      63 ..     106     124 ..      95     128 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.24
                TTHCTTSTT--HHHHHHH CS
       HHH_8 46 eeeltklpgiGkkiaaki 63
                +e l k  g+G+k+a  i
  CTQ28813.1 73 KE-LIKTNGVGPKLALAI 89
                56.88999*******877 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0002
                 -HHHHTTHCTTSTT--HHHHHHH CS
       HHH_8  41 eitsleeeltklpgiGkkiaaki 63 
                 e++s    l klpgiGkk+a+++
  CTQ28813.1 106 EVAS----LVKLPGIGKKTAERL 124
                 4444....99**********985 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.9   6.8e+03      36      47 ..      17      28 ..      10      41 .. 0.70
   2 ?    6.9   0.0    0.0049       6.7      33      53 ..      71      91 ..      65     102 .. 0.84
   3 ?    5.9   0.0      0.01        14      28      51 ..     101     124 ..      93     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.9
       HHH_2 36 eLlevddiGeei 47
                 Lle  ++G e+
  CTQ28813.1 17 VLLETAGVGYEV 28
                688999999887 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0049
       HHH_2 33 sleeLlevddiGeeiAqsive 53
                 ++eL++ +++G++ A +i +
  CTQ28813.1 71 LFKELIKTNGVGPKLALAILS 91
                689*************99976 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.01
       HHH_2  28 aLkkasleeLlevddiGeeiAqsi 51 
                 a ++ ++  L+++++iG+++A+  
  CTQ28813.1 101 AVEREEVASLVKLPGIGKKTAERL 124
                 667778899999999999999874 PP

>> LcrG  LcrG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.23      21      61 ..      67     108 ..      55     114 .. 0.83
   2 ?   -3.3   0.0       6.6   9.1e+03      48      60 ..     152     164 ..     139     170 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
        LcrG  21 eRakllqelleglGlapeageklfggleae.lvkaaeqeLle 61 
                 +   l++el++  G++p+ +  +++g++a+  v+a e+e ++
  CTQ28813.1  67 QERTLFKELIKTNGVGPKLALAILSGMSAQqFVNAVEREEVA 108
                 34479***********************99577788998665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.6
        LcrG  48 eaelvkaaeqeLl 60 
                     + +aeqe +
  CTQ28813.1 152 AGPTADDAEQEAV 164
                 4455667888765 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.32   4.4e+02      24      38 ..      79      93 ..      74     112 .. 0.81
   2 ?    9.4   0.0    0.0011       1.5      23      40 ..     113     130 ..     105     137 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.32
  5_3_exonuc 24 pgiGektAakLlkey 38
                +g+G+k A ++l+ +
  CTQ28813.1 79 NGVGPKLALAILSGM 93
                79********99876 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0011
  5_3_exonuc  23 vpgiGektAakLlkeygs 40 
                  pgiG+ktA +L+ e+++
  CTQ28813.1 113 LPGIGKKTAERLIVEMKD 130
                 79***********99875 PP

>> DUF3173  Domain of unknown function (DUF3173)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         4   5.6e+03      12      24 ..      62      74 ..      58      77 .. 0.76
   2 ?    2.3   0.0      0.11   1.6e+02       7      26 ..     109     129 ..     105     132 .. 0.88
   3 ?    6.4   0.0    0.0057       7.9       7      22 ..     166     181 ..     163     186 .. 0.87
   4 ?   -3.0   0.0         5   6.8e+03      17      25 ..     190     198 ..     187     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4
     DUF3173 12 GfkehtArdiIrq 24
                Gf++++ r+++++
  CTQ28813.1 62 GFNNKQERTLFKE 74
                8888888877775 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.11
     DUF3173   7 dLikl.GfkehtArdiIrqaK 26 
                  L+kl G  ++tA+++I + K
  CTQ28813.1 109 SLVKLpGIGKKTAERLIVEMK 129
                 699999***********9887 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0057
     DUF3173   7 dLiklGfkehtArdiI 22 
                  L++lG+k++ A++++
  CTQ28813.1 166 ALVALGYKPQEASRMV 181
                 69***********997 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 5
     DUF3173  17 tArdiIrqa 25 
                  ++++Ir+a
  CTQ28813.1 190 NSETLIREA 198
                 578999998 PP

>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.11   1.6e+02      34      73 ..      83     122 ..      74     122 .. 0.83
   2 ?    7.3   0.1    0.0039       5.4      39      64 ..     145     170 ..     144     177 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.11
                     -EEEEEE--SSTT-TTHHHHHHHHHHHHC.STT--EEEEE CS
  FeS_assembly_P  34 gkVsvditltypacslaeairadaeaalralpgvevveVe 73 
                      k +++i  +  a+++++a++++  a l +lpg+ + ++e
      CTQ28813.1  83 PKLALAILSGMSAQQFVNAVEREEVASLVKLPGIGKKTAE 122
                     566777778889999999**9999999999***9988875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0039
                     EE--SSTT-TTHHHHHHHHHHHHC.S CS
  FeS_assembly_P  39 ditltypacslaeairadaeaalral 64 
                     d+ lt+pa + a++ +++a aal al
      CTQ28813.1 145 DLVLTSPAGPTADDAEQEAVAALVAL 170
                     689********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1599.70
//
Query:       CTQ28814.1  [L=173]
Description: component of RuvABC resolvasome, endonuclease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-68  228.6   0.6      3e-68  228.4   0.6    1.0  1  RuvC      Crossover junction endodeoxyribonuclease RuvC
    0.00085   19.4   0.0      0.002   18.2   0.0    1.7  1  DUF3882   Lactococcus phage M3 protein
  ------ inclusion threshold ------
      0.015   14.8   0.1      0.019   14.4   0.1    1.1  1  NeuB      NeuB family


Domain annotation for each model (and alignments):
>> RuvC  Crossover junction endodeoxyribonuclease RuvC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.4   0.6     5e-72     3e-68       1     148 []       4     150 ..       4     150 .. 1.00

  Alignments for each domain:
  == domain 1  score: 228.4 bits;  conditional E-value: 5e-72
                 EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE---S-HHHHHHHHHHHHHHHHHHH--SEEEEEE-S----HHHHHHHHHHHHHHHHHHHTTT--EEEE CS
        RuvC   1 ilGiDPGsrktGygvieeagrklslltsgvirtksdplserlkavfdaveelldayepdalaieqvffaknvdsvlklaqarGvvilaalereisvaey 99 
                 ilGiDPGsr+tGygvi+++gr+ls+l+sg+irtk+d+l +rlk ++++v+e++++++pd++aieqvf+akn+ds+lkl+qarGv+i+aa ++ ++v+ey
  CTQ28814.1   4 ILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAATNQALPVFEY 102
                 8************************************************************************************************** PP

                 EHHHHHHHHTSSTT--HHHHHHHHHHHTT----SS.S-THHHHHHHHHH CS
        RuvC 100 tpsqvkkavtGigkaekeqvqalvkrlLklkakpkpadaaDalavaith 148
                 +++qvk++v+Gig+aek+qvq++v++lLkl a+p+ adaaDala+aith
  CTQ28814.1 103 AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQ-ADAADALAIAITH 150
                 ***********************************.************9 PP

>> DUF3882  Lactococcus phage M3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.4e-07     0.002      18      99 ..      13      95 ..       1     152 [. 0.79

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.4e-07
                -EEEEE.EE..TTEEEEEEE----TTS-HHHHHHHHHHHHHHHHHHTT-TT-EEEEE-----SSHHHHHHHHHHHHHHHHHHBTT CS
     DUF3882 18 gtGyaf.rk..dnevvvGsikaynkkkdalerakdivdaikevieeydlkdyflaieepiitrkrkgsisliranGsflGvidnl 99
                 tGy   r+   +  ++Gs    +k  d   r k+i  +++e+i +++  dyf aie+  ++++   ++ l +a G  + +  n+
  CTQ28814.1 13 VTGYGViRQvgRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQ-PDYF-AIEQVFMAKNADSALKLGQARGVAIVAATNQ 95
                5888642555334468999888888899999****************8.4665.8*********************988777665 PP

>> NeuB  NeuB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   3.1e-06     0.019      94     162 ..      88     166 ..      68     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.1e-06
                 EE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHH..........HHHT--EEEEE-.---SS--GGG--TH CS
        NeuB  94 KiaSgeltnlpllekiaktgkpvilStGmatleeieeavevl.........reagaeklvllhC.tseYPapledvnLk 162
                  i ++  + lp+ e++a++ k+ ++  G a+ +++++ v++l         ++a a  +++ hC +s+  a++++++L+
  CTQ28814.1  88 AIVAATNQALPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLlklpanpqaDAADALAIAITHChVSQNAAQISETRLN 166
                 5667788899***************************************98888889999****557778888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1326.26
//
Query:       CTQ28815.1  [L=246]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-94  316.2   0.1    1.4e-94  316.0   0.1    1.0  1  Transcrip_reg  Transcriptional regulator


Domain annotation for each model (and alignments):
>> Transcrip_reg  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.0   0.1     8e-99   1.4e-94       1     239 [.       5     235 ..       5     236 .. 0.97

  Alignments for each domain:
  == domain 1  score: 316.0 bits;  conditional E-value: 8e-99
                    .XCHHCCCCCCHCCCCHHHHHHHHHHHHHHHHHTHH-S-GGG-HHHHHHHHHHHHTT--HHHHHHHHHHCCSTS.TS.--EEEEEEEEETTTEEEE CS
  Transcrip_reg   1 skWsnikhkKaandakkgklftklakeItvaakeeggpDpesNprLraaiekakkanvpkdnIeraIkkgagekseganyeevtyegygpggvavi 96 
                    skW+n+kh+Kaa+dak+gk+ftk+++e++ aa+  gg+Dp+sNprLraa++ka ++n+++d+++raI++g g+ +e+an+e+++yegygpgg+av+
     CTQ28815.1   5 SKWANTKHRKAAQDAKRGKIFTKIIRELVTAARL-GGGDPASNPRLRAAVDKALSNNMTRDTLNRAIARGVGG-DEDANMETIIYEGYGPGGTAVM 98 
                    8********************************6.999*********************************96.6889****************** PP

                    EEEEES-HHHHHHHHHHHHHHTT-EEE-TTSSGGGEEEEEEEEEECCHCT-HHHHHHHHHHHHTESEEEEETTTC.EEEEEEGGGHHHHHHHHHHT CS
  Transcrip_reg  97 vealTdnknrtaaevrsifsknggnlgesgsvsflFerkgvivveekeeevdedelleaaieaGaeDveedeeeevievitepedlaavkkaLeea 192
                    ve+l+dn+nrt+aevr++f+k ggnlg++gsvs+lF++kgvi++ ek    ded+++eaa+eaGaeDv +  +++ i v+t+ e++ av++aLe+a
     CTQ28815.1  99 VECLSDNRNRTVAEVRHAFTKTGGNLGTDGSVSYLFSKKGVISF-EK---GDEDTIMEAALEAGAEDVVT-YDDGAIDVYTAWEEMGAVRDALEAA 189
                    ********************************************.54...79*****************8.55789*******************9 PP

                    TT---SEEEEEEEESS-EE--HHHHHHHHHHHHHHHTSTTEEEEEES CS
  Transcrip_reg 193 gglevesaeleyipkeeveldeeeaekleklidaLeeldDVqnvytN 239
                     gl+ ++ae+++ip+++ ++d e+a kl +lid+Le++dDVq+vy+N
     CTQ28815.1 190 -GLKADAAEVSMIPSTKADMDAETAPKLLRLIDMLEDCDDVQEVYHN 235
                    .567******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1971.38
//
Query:       CTQ28816.1  [L=147]
Description: dATP pyrophosphohydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-20   73.9   1.1    1.3e-20   73.8   1.1    1.0  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   1.1   7.3e-25   1.3e-20       2     130 ..       5     141 ..       4     142 .. 0.86

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 7.3e-25
                 EEEEEEEEEEETTSE.EEEEEESSSSTTTEESSEEECBTTSHHHHHHHHHHHHHHSE..EEEEEEEEEEEEEEEEEEEEEEE.......EEEEEEEEEE CS
       NUDIX   2 lrravgvvllnekge.vLlvrrskkpfpgWelPgGkvepgEtpeeAArREleEEtGl..eaellellgrlhylapydgpygd.......eheilyvfle 90 
                 l+++v vv++ e+++ vL+++r+ ++++ W+ + G +e+gEt+ +AA+RE++EE+ +   +e+l+l+++ +++ ++ +++ +       e+   ++f  
  CTQ28816.1   5 LPVSVLVVIYAEDTKrVLMLQRR-DDPAFWQSVTGSLEAGETALQAAAREVKEEVAIdvACEQLTLIDCQRTVEFEIFSHLRhryapgvERNTEFWFCL 102
                 6799*********889*******.88888***************************74255*******9999999999999999999997777777776 PP

                 EECSGCSSTSTTTEEEEEEEEHHHHHHHHTHCTHHHHHHH CS
       NUDIX  91 evegelepndenevsevrwvpleellkeklaaesrkllpw 130
                 ++ +e e +   e+ ++rwv+ +e+++ +  +++r+ +++
  CTQ28816.1 103 ALPHEREIT-FTEHLAYRWVSATEAAALTKSWSNRQAIEE 141
                 666666666.77*************777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1128.65
//
Query:       CTQ28817.1  [L=595]
Description: aspartyl-tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-106  356.5   0.0   1.3e-106  356.2   0.0    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    2.2e-31  107.9   0.1    4.3e-31  107.0   0.1    1.5  1  GAD              GAD domain
      2e-16   59.7   0.0    4.6e-16   58.6   0.0    1.6  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    0.00066   19.2   0.1       0.53    9.7   0.0    2.3  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.2   0.0  2.9e-110  1.3e-106       2     314 .]     118     558 ..     117     558 .. 0.99

  Alignments for each domain:
  == domain 1  score: 356.2 bits;  conditional E-value: 2.9e-110
                  CCHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   2 eelrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqiar 99 
                  ee rlk+ryldlr++++ + l++r+++t+ vr++++++gf++ietP+L+k+ t+egar+++v+sr+++++f+aL+qspql+++ll+++g+dr++qi +
   CTQ28817.1 118 EEARLKYRYLDLRRPEMAQRLKTRAKITSFVRRFMDDHGFLDIETPMLTKA-TPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVK 214
                  799************************************************.********************************************** PP

                  EE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS-SS--HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 100 aFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaieklneigkdldkaderalvk 197
                  +FR+Ed+r+dr++ EFtqi++e+sf++  ++ +++e ++++l+ ev +++             dl + f+ +t++ea ++     +++dk+d+r  ++
   CTQ28817.1 215 CFRDEDLRADRQP-EFTQIDVETSFMTAPQVREIMEAMVRQLWLEV-KGV-------------DLGE-FPIMTFAEAERR-----YGSDKPDLRNPME 291
                  *************.********************************.888.............7774.************.....************* PP

                  .................................................................................................. CS
                  .................................................................................................. RF
  tRNA-synt_2 198 .................................................................................................. 197
                                                                                                                    
   CTQ28817.1 292 lvdvadllksvefavfagpandpkgrvaalrvpggasltrklideygnfvkiygakglayikvterakgmdginspvakfltaeiveaildrtgaqdg 389
                  ************************************************************************************************** PP

                  ................................HS--SEEEEEEEB...........GGGSTTCBBBSTTS........TTBBSEEEEEETTEEEEEEE CS
                  ................................xxxxxxxxxxxxx...........xxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 198 ................................keknepvfvtdfP...........aelkpFyarkeedd........kkltesyDllingvElvgGs 244
                                                  ++k+ p++v+dfP           a+++pF+++k+ +         ++++++yD++ing+E++gGs
   CTQ28817.1 390 dmiffgadnkkvvadalgalrlklgkdlsltdESKWAPLWVIDFPmfeddgeggltAMHHPFTSPKDMTAdelkaapeEAVANAYDMVINGYEVGGGS 487
                  ******************************************************************999899************************** PP

                  EB--SHHHHHHHHHHCCHH.SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XXX CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 245 lRiedpeeleeklkskgld.eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPklt 314
                  +Ri++ e++++++   g++ +e++ekf+++l+al+yG+pph+Gl++GldRl+mll+g+++IrdviaFPk+t
   CTQ28817.1 488 VRIHRGEMQQTVFGILGINeQEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTT 558
                  *******************99************************************************86 PP

>> GAD  GAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   0.1   9.6e-35   4.3e-31       1      95 []     307     406 ..     307     406 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 9.6e-35
                 HHHHHHS.TEEEEEEEETTG-TTTSHHHHHHHHHHHHHTTHSHCEEEEESS.....GGEETTTCCCS-HHHHHHHHHHCT--TTEEEEEEEEEHHHHHH CS
         GAD   1 fsealks.ggsvkalrvpggaaklsrkeideleefakelgakglawikveg.....egltgpiakflteeevkklleavgaeegDillfvAdkkktvnk 93 
                 f+ ++++ +g+v+alrvpgg a+l+rk ide+++f+k++gakgla+ikv++     +g+++p+akflt+e v+ +l+++ga++gD+++f+Ad+kk+v++
  CTQ28817.1 307 FAGPANDpKGRVAALRVPGG-ASLTRKLIDEYGNFVKIYGAKGLAYIKVTErakgmDGINSPVAKFLTAEIVEAILDRTGAQDGDMIFFGADNKKVVAD 404
                 67788999***********8.*****************************************************************************9 PP

                 HH CS
         GAD  94 al 95 
                 al
  CTQ28817.1 405 AL 406
                 97 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0     1e-19   4.6e-16       1      76 []      18     102 ..      18     102 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 1e-19
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET..HHHHHHHTTS-TTSEEEEEEEEEECTTS.........SEEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr..eeatklaenlkeGdvvrvtGrvkrrpgg.........elelkveeiell 76 
                      Vt++G+v ++  r+ g++ifid rD++g++qv++++  ++a kla++l+++ +++vtG+v++r+++          +e+ +++++++
       CTQ28817.1  18 VTLCGWVNRR--RDLGSLIFIDMRDREGIVQVFFDPdrADALKLASELRNEFCIQVTGTVRAREEKninadmatgAIEVLASDLTII 102
                      89********..***************************************************777677777777899999998876 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1   0.00075       3.4     103     129 ..     208     234 ..     192     260 .. 0.81
   2 !    9.7   0.0   0.00012      0.53     211     235 ..     530     552 ..     517     556 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00075
                   EEEEEEEEEBSST-SSSB-SEEEEEEE CS
  tRNA-synt_2d 103 kiisigrvfRrdavDathlaeFhqveg 129
                   ++  i ++fR +++ a +++eF+q++ 
    CTQ28817.1 208 RYYQIVKCFRDEDLRADRQPEFTQIDV 234
                   677889*******************85 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00012
                   EEEEEEEHHHHHHHHHT-SSGHHHH CS
  tRNA-synt_2d 211 gfafGlGveRlamlkygieDiRelv 235
                   g+af  G++Rl+ml +g ++iR+++
    CTQ28817.1 530 GLAF--GLDRLTMLLTGTDNIRDVI 552
                   5555..67**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4500.85
//
Query:       CTQ28818.1  [L=188]
Description: putative hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-40  139.1   0.0    1.9e-40  138.9   0.0    1.0  1  Isochorismatase  Isochorismatase family


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.9   0.0   1.1e-44   1.9e-40       1     175 []       9     183 ..       9     183 .. 0.94

  Alignments for each domain:
  == domain 1  score: 138.9 bits;  conditional E-value: 1.1e-44
  Isochorismatase   1 talvviDmqndfveegvkeseeisavveninkllkaarkagipviftrdvhe..leevkgdlderkaaphfkpgttgaelvpelaplegdvvvd 92 
                      talvviD+q++++  ++   +++++vv+++++l++++r++g pvi++r   +  + e  +++ + +a +h+ p+++ +     l  +e+d+ v+
       CTQ28818.1   9 TALVVIDLQEGIL-PFAGGPHRADEVVARAARLADKCRQQGSPVIMVRVGWSadFAEALKQPVDAQAGAHTLPENWWTYPAT-LGKQESDIEVT 100
                      8************.**********************************9999888888888888888888888888776665.56688****** PP

  Isochorismatase  93 KtrfsafagtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaalspelhdaalkrlkqafatvitted 175
                      K++++af+gtdl+ +L+++gi+ti+l+Gi+t+++Ve+tar a +lG++ v+++DA++a s+e+h+ ++ +++++ + v +te+
       CTQ28818.1 101 KRQWGAFYGTDLELQLRRRGIDTIILCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHQGSMTHIFPRIGRVRSTEE 183
                      ******************************************************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1569.44
//
Query:       CTQ28819.1  [L=272]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-50  171.8   0.5    2.9e-50  171.4   0.5    1.0  1  DUF72     Protein of unknown function DUF72


Domain annotation for each model (and alignments):
>> DUF72  Protein of unknown function DUF72
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.4   0.5   1.6e-54   2.9e-50      10     215 ..      21     248 ..      16     249 .. 0.93

  Alignments for each domain:
  == domain 1  score: 171.4 bits;  conditional E-value: 1.6e-54
                 HHHHHCCT-SEEEE-HHCCSSS-HHHHHHHHCTS-TT-EEEEE--CCCCCS.G-.SCHHHHHHHHHH.CHHHCT-EEEEEEE--TT--S.HHHHHHHHH CS
       DUF72  10 rLeyYarhfntVEinstFYalpspetvakwaaqtpedFrFavKapraitherne.daeealerflesalepLgeklgpllfQlppsfkfdeenlerLea 107
                 +Le+Yarhfn+VE+n+t Yalp+pe va+w++qt++dFrF++K+p +i+h+++  +++e+ ++f+++ l+pL++++g +++Qlp++f  ++++l  L +
  CTQ28819.1  21 SLEEYARHFNCVEGNTTLYALPKPEIVARWYEQTHDDFRFCFKFPATISHQAALrHCDELSSEFFAR-LAPLASRIGQYWLQLPATF--GPRDLPALWH 116
                 79************************************************852337**********8.*******************..988******* PP

                 HTTTS-..S.EEEE--BGGGH......H.HHHHHHHTT-E.EEEE.................--SSC--------SSTEEEEEE--SHHTTB----HHH CS
       DUF72 108 flaalp..l.lavEvRhrswf......e.llellrehgva.vvld.................epkkpklpledvttadfvyvRlhgreeryayrYseee 178
                 fl+ lp    + vEvRh+++f      + l++ l+e++v+ v+ld                 ++kkpk+p++ v ta++++vR++g +   + + ++e 
  CTQ28819.1 117 FLDGLPkdFtYGVEVRHPEFFakgeaeQqLNRGLHERNVNrVILDsrpvhsaaatspamidaQQKKPKVPVHAVMTARQPMVRFIGGD---DMAHNREL 212
                 ********55**********999**9846***********888899**************8655**********************96...788999** PP

                 HHHHHHHHHHHHTCSSEEEEEE-SBCCCHHHHHHHHH CS
       DUF72 179 laewaerikawaaegrevyvffnndaegqaplnaraL 215
                 ++ w++++++w+++  ++++f ++++ + ap+ + +L
  CTQ28819.1 213 FRVWLQTLAKWHQS-GTPWLFLHTPDIAFAPALVDTL 248
                 ************97.599************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 2231.73
//
Query:       CTQ28820.1  [L=131]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-25   88.5  10.1    3.6e-25   88.4  10.1    1.0  1  MAPEG     MAPEG family


Domain annotation for each model (and alignments):
>> MAPEG  MAPEG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4  10.1     2e-29   3.6e-25       1     130 []       3     120 ..       3     120 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 2e-29
                 HHHHHHHHHHHHHHHHHHHHHHHHHTT--SS---S......SH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.T-HHHHHHHHHHHHHHHHHHHH CS
       MAPEG   1 lalyagllallllllslivvkerrkakiaigegkanapralddklppklqrairahgNflEyvplfllavllaeltgaetglaallaaafvvaRvlhal 99 
                 +alya+l alll+ +s+ vv+ r+++ +++g+g+       +     +lq air+hgN +Eyvp++l+++l++e++ga t+++++++++++v+R++h++
  CTQ28820.1   3 SALYAVLGALLLVKFSFDVVRLRTQYHVGYGDGG-------FS----ELQVAIRVHGNAVEYVPIGLILLLFMEMNGALTWMVHVCGILLIVGRLMHSW 90 
                 589*******************************.......99....*****************************999******************** PP

                 HHHH-..SGGGHHHHHHHHHHHHHHHHHHHH CS
       MAPEG 100 gyiaggpppgRslgflltllvllvlsllaly 130
                 g +      +R  g+ +t+ +ll+++l++l+
  CTQ28820.1  91 GFHHR-VYYWRRSGMSATWCALLLMVLANLW 120
                 ***99.99*******************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1033.46
//
Query:       CTQ28821.1  [L=247]
Description: AdoMet-dependent methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-13   51.7   0.0    2.6e-13   50.5   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    3.8e-11   43.5   0.0    7.6e-11   42.5   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    1.9e-10   40.7   0.0    2.9e-10   40.1   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    1.2e-09   37.8   0.0    2.3e-09   36.9   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain
    2.6e-09   37.7   0.0    4.3e-09   37.0   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    1.3e-05   24.6   0.0    2.7e-05   23.6   0.0    1.5  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    1.7e-05   24.7   0.0    2.3e-05   24.3   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    6.2e-05   22.6   0.0    9.1e-05   22.1   0.0    1.2  1  MTS              Methyltransferase small domain
    0.00047   19.7   0.0       0.59    9.6   0.0    2.2  2  CheR             CheR methyltransferase, SAM binding domain
     0.0015   18.4   0.0      0.002   17.9   0.0    1.3  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0034   17.5   0.0      0.012   15.7   0.0    1.6  2  FtsJ             FtsJ-like methyltransferase
     0.0068   15.7   0.0      0.013   14.8   0.0    1.4  2  Rsm22            Mitochondrial small ribosomal subunit Rsm22
     0.0079   16.0   0.0      0.012   15.4   0.0    1.2  1  Met_10           Met-10+ like-protein
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.033   14.1   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
      0.048   13.3   0.0      0.085   12.5   0.0    1.4  1  UPF0020          Putative RNA methylase family UPF0020
       0.13   11.6   0.0       0.18   11.2   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
       0.15   11.6   0.0       0.42   10.0   0.0    1.7  2  Methyltransf_4   Putative methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   2.5e-16   2.6e-13       1      97 []      60     158 ..      60     158 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 2.5e-16
                      EEEET-TTSHHHHHHHCTS..TSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl..gkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeia 90 
                      v dlGc  G  tl + +++  + ++++++D s++m+e++r+++++ ++   ve+++gd++d+  e+    lv++++++++l++ d++++l++++
       CTQ28821.1  60 VYDLGCSLGAATLSVRRNIshPGCRIIAIDNSPAMVERCRRHINAYKAptPVEVIEGDIRDVTIEN--ASLVILNFTIQFLEPGDRQAILNKVY 151
                      78****************98637********************9966669*************987..789999999***************** PP

                      HHEEEEE CS
  Methyltransf_25  91 rvLkpgG 97 
                      + L+pgG
       CTQ28821.1 152 QGLNPGG 158
                      ******9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   7.2e-14   7.6e-11       2      96 .]      62     162 ..      61     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 7.2e-14
                      EET-TTSHHHHHHHHTT....SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHH CS
  Methyltransf_11   2 dvGcGtGrlaealakrg....arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRv 87 
                      d+Gc  G+ +  + ++     +r++++D s++m+++++++++  +    ve++++d++++ +e+    lv+++++++++   d++++l+++++ 
       CTQ28821.1  62 DLGCSLGAATLSVRRNIshpgCRIIAIDNSPAMVERCRRHINAYKAptPVEVIEGDIRDVTIEN--ASLVILNFTIQFLepGDRQAILNKVYQG 153
                      99************6656667********************99999999**********88877..669**********766************ PP

                      EEEEEEEEE CS
  Methyltransf_11  88 LkpgGllvi 96 
                      L pgG lv+
       CTQ28821.1 154 LNPGGALVL 162
                      ******985 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0   2.8e-13   2.9e-10       3     111 ..      56     164 ..      54     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 2.8e-13
  Methyltransf_31   3 kglrvlDlGCGtGeltfelae.elgpkaevvGiDiseeaielArenaq.klgldnveFeqgdieeleklledekfDlilsnevl..naladpdk 92 
                       +++v+DlGC  G+ t+   +    p+++++ iD+s+ ++e++r +    +  + ve+ +gdi +    +e  +  l++ n ++      d ++
       CTQ28821.1  56 PNTQVYDLGCSLGAATLSVRRnISHPGCRIIAIDNSPAMVERCRRHINaYKAPTPVEVIEGDIRDVT--IE--NASLVILNFTIqfLEPGDRQA 145
                      689*****************955556999****************554045566***********77..55..57899999888888999**** PP

  Methyltransf_31  93 ileeiervlkpggillied 111
                      il+++ + l+pgg+l++++
       CTQ28821.1 146 ILNKVYQGLNPGGALVLSE 164
                      ***************9876 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   2.2e-12   2.3e-09      54     169 ..      48     167 ..      21     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 2.2e-12
                     HHHSS-GGG-SEEEEET-TTSHHHHHHHH..H-TT-EEEEEE.-HHHHHHHHHHS.-----TTEEEEES-TTTS-----SEEEEESSGGGS-HHH CS
  Methyltransf_2  54 vleafdleglkslvDvGGGtGalakaivs..ayPtikvivfD.lpeVveaAkehl.sageeervefvgGdffkdslPeaDaillkrvlhDwsdek 144
                     +l++  +++ ++++D+G   Ga+   + +   +P++++i  D  p  ve+ ++h+   ++ + ve+++Gd+++ ++ +a +++l+  +   + ++
      CTQ28821.1  48 MLAERFVQPNTQVYDLGCSLGAATLSVRRniSHPGCRIIAIDnSPAMVERCRRHInAYKAPTPVEVIEGDIRDVTIENASLVILNFTIQFLEPGD 142
                     455555778899***********9999873359********94599*********55566678******************************** PP

                     HHHHHHHHHHH--TT-EEEEEE--- CS
  Methyltransf_2 145 cvklLkrvkkalpagGkvivveavl 169
                      + +L++v++ l++gG++++ e   
      CTQ28821.1 143 RQAILNKVYQGLNPGGALVLSEKFS 167
                     *******************999764 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0     4e-12   4.3e-09       2      99 .]      62     160 ..      61     160 .. 0.93

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 4e-12
  Methyltransf_12   2 eiGcGtGsllrallekl..pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnirk 91 
                      ++Gc  G+ +  +++++  p+++++++D sp+++e+ +++++++++   + ve+ + d+ d   +    lv+++++++ l   d++++l+++++
       CTQ28821.1  62 DLGCSLGAATLSVRRNIshPGCRIIAIDNSPAMVERCRRHINAYKA--PTPVEVIEGDIRDVTIE-NASLVILNFTIQFLepGDRQAILNKVYQ 152
                      89*****************************************996..77888888888777665.**************************** PP

  Methyltransf_12  92 lLkpgGrl 99 
                       L+pgG l
       CTQ28821.1 153 GLNPGGAL 160
                      ******75 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   2.5e-08   2.7e-05      46     215 ..      55     225 ..      40     244 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 2.5e-08
                      --TTEEEEES-TT-HHHHHHHHHHHHHH.EEEEEES-HHHHHHHHHHHHH.HTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHH CS
  Ubie_methyltran  46 krgakvlDvagGtgDlafklsdsvgekg.kvvvlDinenmLkvgekklke.egkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLk 137
                      ++ ++v D+ +  g  ++++ +++ + g +++ +D ++ m++  +++++  ++ + +e + ++  ++  e+ s  ++  +  +    D++  L+
       CTQ28821.1  55 QPNTQVYDLGCSLGAATLSVRRNISHPGcRIIAIDNSPAMVERCRRHINAyKAPTPVEVIEGDIRDVTIENASLVILNFTIQFLEPGDRQAILN 148
                      4566899*****************999889****************9987255669**************99988776666667889******* PP

                      HHHHHEEEEEEEEEEE.E----SHHHHHHHHHHHH.HHHHHHHHHHS-HHHHHHHHHHHHHS--HHHHHHHHHHTTEEE CS
  Ubie_methyltran 138 eayrvlkpGGrlvvle.fskvelpllsqayelyskevlPvlGkllakdldsyryLvesirafPdqetlkeliedaGfks 215
                      ++y+ l pGG+lv  e fs    ++ +  ++++   +    G     ++ + r + e +      et k+ +++aGf++
       CTQ28821.1 149 KVYQGLNPGGALVLSEkFSFEDAHVGELLFNMHHD-FKRANG-YSELEISQKRSMLENVMLTDSVETHKARLRQAGFEH 225
                      ************98873444444444445555443.333333.233334444555555555555666666666666665 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.2e-08   2.3e-05      21     134 ..      55     181 ..      20     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.2e-08
  Methyltransf_23  21 raggrvLdiGcGtGillevlren....gfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqg.....kfdlIvlrevlehvp..dppellr 103
                      +++  v d+Gc  G  + + r+n    g+ ++++D sp++ve+ +  ++a k +++ + ++ + +        l++l++++  ++  d  + l+
       CTQ28821.1  55 QPNTQVYDLGCSLGAATLSVRRNishpGCRIIAIDNSPAMVERCRRHINAYKAPTPVEVIEGDIRdvtieNASLVILNFTIQFLEpgDRQAILN 148
                      5677899*******988888887667799**************998888888888666444433366666***************88899**** PP

  Methyltransf_23 104 qiatllkpgGylllse..plaslkedrllldwl 134
                      ++++ l+pgG l+lse  + ++++  +ll +++
       CTQ28821.1 149 KVYQGLNPGGALVLSEkfSFEDAHVGELLFNMH 181
                      ***************964333444444444443 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   8.6e-08   9.1e-05      23     165 ..      49     190 ..      45     194 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 8.6e-08
                 HHHHCHCCTCSEEEEET-TTSHHHHHHHH..HTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHH CS
         MTS  23 LletlpkelsgkvlDlGcGaGvlgaalak..espeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdlivsNPPfhagkatelav 117
                 L+e + +  + +v DlGc  G+ ++++ +   +p  ++ ++d++ + +e +++ ++a k+   vev++ d+ + +  ++  l++ N  ++     e   
  CTQ28821.1  49 LAERFVQ-PNTQVYDLGCSLGAATLSVRRniSHPGCRIIAIDNSPAMVERCRRHINAYKAPtpVEVIEGDIRDVTI-ENASLVILNFTIQFL---EPGD 142
                 6677777.6778******8887666666511678889********************999999********99888.999******655443...4567 PP

                 HHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS--EEEEEESSE CS
         MTS 118 aeeliaeAkeaLkegGeLliVanrklgyeslleelfgnvevvaktkkf 165
                  ++++++  + L++gG L++  +   +  ++ e lf+ ++  ++ +++
  CTQ28821.1 143 RQAILNKVYQGLNPGGALVLSEKFSFEDAHVGELLFNMHHDFKRANGY 190
                 899999**********99775555555555556666777777777766 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00056      0.59      31      84 ..      56     102 ..      39     113 .. 0.78
   2 !    7.9   0.0    0.0018       1.9     143     173 ..     132     162 ..     119     176 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00056
                 SSEEEEEES-TTTHHHHHHHHHHHCHSTTTSSS-EEEEEEESSCHHHHHHHHTE CS
        CheR  31 krvriwsagcssGeEpYslAmllketlpkaaklkvkilAtDidlkvlekAkagv 84 
                  + +++  gcs G  + s+   +++      +  ++i+A+D++ +++e++++ +
  CTQ28821.1  56 PNTQVYDLGCSLGAATLSVRRNISH------P-GCRIIAIDNSPAMVERCRRHI 102
                 5678999999999777666555555......3.699**************9865 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0018
                 -SSGGGC-CHHHHHHHHHHHCCEEEEEEEEE CS
        CheR 143 rnvliYfdeetqekvlerfaeklkpgglLll 173
                    + ++++ +++++l+++++ l+pgg L+l
  CTQ28821.1 132 NFTIQFLEPGDRQAILNKVYQGLNPGGALVL 162
                 5567799999*******************98 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.9e-06     0.002      61     134 ..      45     119 ..      21     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTC.EEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-GG CS
        PCMT  61 mvalalellelkkgarvLevGsGsGyltavlarlvgekg.rvvsierikelveeakrnlkkldle.nvivvvgDGr 134
                 m++++ e   +++ ++v ++G+  G  t  + r + + g r+++i+ ++ +ve+ +r++++ ++   v v++gD r
  CTQ28821.1  45 MIGMLAER-FVQPNTQVYDLGCSLGAATLSVRRNISHPGcRIIAIDNSPAMVERCRRHINAYKAPtPVEVIEGDIR 119
                 33333332.389****************888877766544********************9877658999999966 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.2e-05     0.012      18      79 ..      53     127 ..      42     136 .. 0.84
   2 ?   -1.5   0.0       2.2   2.3e+03     124     154 ..     153     186 ..     143     228 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-05
                 -S-TT-EEEECT-TTSHHHHHHCCT.T..-SEEEEEESSSS............HHHTTEEEECS-CCCSSHHHHH CS
        FtsJ  18 lfkpgktvvDlgaaPGgwsqvllqrlga.kgkvvavDlqpm............aplpgvttiqgditdpetieki 79 
                 +++p+++v Dlg++ G+ +  + +++ + +++++a+D  p             + +  v++i+gdi+d + +++ 
  CTQ28821.1  53 FVQPNTQVYDLGCSLGAATLSVRRNISHpGCRIIAIDNSPAmvercrrhinayKAPTPVEVIEGDIRDVTIENAS 127
                 367999*******************96668********988899999888766566899999*****99888765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.2
                 CCECCCEEE.ECCCH..CCCHHHHHHHHHCCEEE CS
        FtsJ 124 llkpggtfv.lkifr..geeteallkqlkkfFek 154
                  l+pgg +v ++ f   ++++ +ll ++ + F++
  CTQ28821.1 153 GLNPGGALVlSEKFSfeDAHVGELLFNMHHDFKR 186
                 5778888775555652244444777777777776 PP

>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.3e-05     0.013      15     134 ..      38     156 ..      25     167 .. 0.71
   2 ?   -2.6   0.0       2.5   2.7e+03      53      92 ..     181     220 ..     171     229 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.3e-05
       Rsm22  15 tyavlrrvLdelaervpdflP.kslldvgegpgtalwaaselwe.eleevlvidaseelleiskelaadapelkeaalrrsvirealeleeadLviisy 111
                  y+ + +++  laer  +  P +++ d+g   g+a++ +    +    +++ id s ++ e  +  +++ ++   ++  +  i   +++e+a Lvi+ +
  CTQ28821.1  38 GYSNIISMIGMLAERFVQ--PnTQVYDLGCSLGAATLSVRRNIShPGCRIIAIDNSPAMVERCRRHINAYKAPTPVEVIEGDI-RDVTIENASLVILNF 133
                 566666666667666655..4145789****999999887766647889********99876654444444444443333334.24678899******* PP

       Rsm22 112 vLleledesreklvknlWakask 134
                 +++ le+ +r+++++++++ ++ 
  CTQ28821.1 134 TIQFLEPGDRQAILNKVYQGLNP 156
                 *****************998765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.5
       Rsm22  53 selweeleevlvidaseelleiskelaadapelkeaalrr 92 
                 ++ +++ + +  ++ s++   + + ++ d+ e+++a+lr+
  CTQ28821.1 181 HHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLRQ 220
                 5567777778888888888888888888888777776665 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-05     0.012      97     184 ..      53     138 ..      47     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
                 T--TT-EEEETT-TTTCCHHHCCHH..TTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEEEE--TTTGGGGH CS
      Met_10  97 lveegevVvdvfAGiGpfaipiaky..skakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrvvmnlpksaieFl 184
                  v+++  V d+    G  ++++ +     + r++aid  P+ v+  ++ i+  k    v++i++D r+v+  + a  v++n+    i+Fl
  CTQ28821.1  53 FVQPNTQVYDLGCSLGAATLSVRRNisHPGCRIIAIDNSPAMVERCRRHINAYKAPTPVEVIEGDIRDVT-IENASLVILNFT---IQFL 138
                 58999999999998888888877642134579*************************************8.666777887764...5555 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.1e-05     0.033      10      74 ..      52     118 ..      48     132 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
  Methyltransf_18  10 slvekgsrvaDiGtDHgylpiylvke..gkakkviasDinegplekakeniekagledkievrlsdG 74 
                      ++v+++++v D G+  g  ++ + ++  +   ++ia+D ++  +e+++++i+ ++  + +ev+ +d 
       CTQ28821.1  52 RFVQPNTQVYDLGCSLGAATLSVRRNisHPGCRIIAIDNSPAMVERCRRHINAYKAPTPVEVIEGDI 118
                      68999*********98876666655411555699**********************99999998885 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     8e-05     0.085      75     121 ..      81     127 ..      45     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8e-05
                 HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS- CS
     UPF0020  75 aelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkege 121
                 +  +++++D+ +++v+++r+  ++++    +e+ + d+++++ ++++
  CTQ28821.1  81 PGCRIIAIDNSPAMVERCRRHINAYKAPTPVEVIEGDIRDVTIENAS 127
                 44559************************************955544 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017      0.18     156     259 ..      51     163 ..      44     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
        PrmA 156 eklvkegeevlDvGt..GSGiLaiaaakL.gakkvvavDiDevAvkvakeNaelNkveaklevalseellk..eekadvivaNILaevl.....ielae 244
                 e++v+++++v D+G+  G++ L++         +++a+D  +  v+  ++ ++  k  + +ev +++++ +   e+a +++ N   + l       +++
  CTQ28821.1  51 ERFVQPNTQVYDLGCslGAATLSVRRNIShPGCRIIAIDNSPAMVERCRRHINAYKAPTPVEV-IEGDIRDvtIENASLVILNFTIQFLepgdrQAILN 148
                 899************8888999997654314569***************99988888888888.45555533358999*****9999984444347899 PP

        PrmA 245 dikklvkeggllilS 259
                 ++++ +++gg l+lS
  CTQ28821.1 149 KVYQGLNPGGALVLS 163
                 999999999999988 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0004      0.42       4      63 ..      59     121 ..      56     140 .. 0.80
   2 ?   -1.2   0.0       1.2   1.2e+03      99     117 ..     146     164 ..     143     222 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0004
                     EEEEET-TTSHHHHHH..HHHSTTSEEEEEES-HHHHHHHHHHHHHC.TTSSEEEEES-CCCH CS
  Methyltransf_4   4 vvleiGcGkGeflval..AkknPdknflGiEirvkvvakvlkkieal.elkNlrilrgdalkv 63 
                      v ++Gc  G +++       +P + +++i+ +  +v+++ ++i+a+   + +++++gd  +v
      CTQ28821.1  59 QVYDLGCSLGAATLSVrrNISHPGCRIIAIDNSPAMVERCRRHINAYkAPTPVEVIEGDIRDV 121
                     57899**999888766115579************************96678888888887544 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
                     HHHHHHHHEEEEEEEEEEE CS
  Methyltransf_4  99 llkelarvLkkgGvlelaT 117
                     +l+++ + L++gG l+l  
      CTQ28821.1 146 ILNKVYQGLNPGGALVLSE 164
                     6777777788888777653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 1880.78
//
Query:       CTQ28822.1  [L=334]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.2e-170  563.6   0.0     1e-169  563.4   0.0    1.0  1  Methyltransf_9   Protein of unknown function (DUF1698)
    1.8e-11   44.1   0.0    3.1e-11   43.4   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
      2e-09   37.4   0.0    3.3e-09   36.7   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    1.8e-07   31.8   0.0    3.9e-07   30.7   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
      2e-07   31.6   0.0    4.6e-07   30.4   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    7.1e-06   26.7   0.0    1.3e-05   25.8   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    8.6e-05   22.0   0.0    0.00013   21.3   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.066   13.0   0.1    1.9  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  563.4   0.0  4.7e-173    1e-169       1     315 []       7     322 ..       7     322 .. 1.00

  Alignments for each domain:
  == domain 1  score: 563.4 bits;  conditional E-value: 4.7e-173
                     HHHHHCTSTTHHHHHCHHHHHHHHH.HCTCCHHHCCHHHHHCS-----SEEESSSS-EEE-SS..-HHHHHHHHHHHHTT----CE-EEETTEEE CS
  Methyltransf_9   1 fykqiakaklsewletlpaqlkewq.ekehgdlkrwakaleklpelkpdsidlkdsvtiekeeqlsegekkklekllralmPWrkGPfslfGvdi 94 
                     fy+ iak+ ls+wletlpaq++ wq ++ hg++++w++a+e lpel+p ++dl +svt+e+e++lseg+++++e+ll++lmPWrkGP+sl+G++i
      CTQ28822.1   7 FYQLIAKSPLSHWLETLPAQVAAWQrDALHGKFREWERAVEFLPELTPWRLDLLHSVTAESETPLSEGHQRRIENLLKNLMPWRKGPYSLYGINI 101
                     8************************8899****************************************************************** PP

                     --SEEHHHHHHHHGGGS.--TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T---EEEEEEE CS
  Methyltransf_9  95 dteWrsdwkWdrvlphlsdlkgrtildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahllplgieqlpeleafdtvfsm 189
                     dteWrsdwkW+rvlphlsdl+grtildvGcg+Gyh+wrm+g+ga+l+vGidP++lfl+qfeavrkllg+dqrahllplgieqlp+leafdtvfsm
      CTQ28822.1 102 DTEWRSDWKWERVLPHLSDLTGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALEAFDTVFSM 196
                     *********************************************************************************************** PP

                     S-GGG-S-HHHHHHHHHCTEEEEEEEEEEEE-BSS-TT-EE--SS-BTTBSS---EEBHHHHHHHHHHTT-EEEEEEEEEE--TTTB--BTTB-S CS
  Methyltransf_9 190 GvlyhrrsPldhllqlkdqlvkgGelvletlvieGdenavlvPedryakmrnvyfiPsaaalkvWlekvgfvdvrivdesvttleeqrkteWlet 284
                     GvlyhrrsPldhl+qlkdql  gGelvletlv+eGden+vlvP drya+mrnvyfiPsaaalk+Wlek+gf+dv ivd +vt++eeqr+teW++t
      CTQ28822.1 197 GVLYHRRSPLDHLWQLKDQLAPGGELVLETLVVEGDENTVLVPGDRYAQMRNVYFIPSAAALKMWLEKCGFIDVCIVDACVTSTEEQRRTEWMTT 291
                     *********************************************************************************************** PP

                     --HHHHEETTEEEEETTSSB--EEEEEEEE- CS
  Methyltransf_9 285 eslkdfldpedpektveGypaPkravlvark 315
                     esl+dfldp+d++ktveGypaP rav++a+k
      CTQ28822.1 292 ESLADFLDPQDQRKTVEGYPAPLRAVIIATK 322
                     *****************************87 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   1.4e-14   3.1e-11      16     163 ..     118     270 ..      76     272 .. 0.75

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 1.4e-14
  Methyltransf_23  16 llpklraggrvLdiGcGtG.illevlrengfsvtgvDlspeaveiaekakkaqkdqfdeqeaaepqg.....................kfdlIv 87 
                      l+  + +g  +Ld+GcG+G ++ + + +  +  +g+D+                  f  q++a+ +                       fd++ 
       CTQ28822.1 118 LS--DLTGRTILDVGCGSGyHMWRMIGAGAHLAVGIDPTQ---------------LFLCQFEAVRKLlgndqrahllplgieqlpaleAFDTVF 194
                      33..678889*********666666655555778****52...............222222333111223334667777777777788****** PP

  Methyltransf_23  88 lrevlehvpdppellrqiatllkpgGylllseplaslk.edrllldwlylvpagrhisff.sarslkelleeaGlevv 163
                      ++ vl+h ++p   l q+++ l+pgG l+l++  ++   ++ l+   +y+  + r ++f+ sa +lk +le+ G+ +v
       CTQ28822.1 195 SMGVLYHRRSPLDHLWQLKDQLAPGGELVLETLVVEGDeNTVLVPGDRYAQ-M-RNVYFIpSAAALKMWLEKCGFIDV 270
                      ********************************9887643777777777754.4.56655559************9665 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   1.5e-12   3.3e-09       5     115 ..     124     230 ..     121     292 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1.5e-12
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkae.vvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkilee 96 
                       ++lD+GCG+G+   ++    g +a+  vGiD ++  + + ++ ++ lg d ++++    ie+l+ l   e fD ++s +vl++  +p + l +
       CTQ28822.1 124 RTILDVGCGSGYHMWRMI---GAGAHlAVGIDPTQLFLCQFEAVRKLLGNDqRAHLLPLGIEQLPAL---EAFDTVFSMGVLYHRRSPLDHLWQ 211
                      589***************...77888889**9999999999999999999999************76...89********************** PP

  Methyltransf_31  97 iervlkpggilliedprll 115
                      +++ l pgg+l++e+  ++
       CTQ28822.1 212 LKDQLAPGGELVLETLVVE 230
                      *************999833 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.8e-10   3.9e-07       1      97 []     126     220 ..     126     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.8e-10
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHH...HHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseeml...eaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiar 91 
                      +Ld+GcG+G ++ ++  + g++  +g+D+++ +l   ea+r+ +  ++ +++++   +e+lp  +  fD v+s+g+l h       + l ++++
       CTQ28822.1 126 ILDVGCGSGYHMWRMIGA-GAHLAVGIDPTQLFLcqfEAVRKLL-GNDQRAHLLPLGIEQLPALE-AFDTVFSMGVLYHRR--SPLDHLWQLKD 214
                      8**************999.68999*********93334444444.3555*************765.9******98888854..34467888888 PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                       L pgG
       CTQ28822.1 215 QLAPGG 220
                      888888 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0     2e-10   4.6e-07       1      95 [.     127     223 ..     127     224 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2e-10
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHH...HHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskeml...klakekaseeglkvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkp 90 
                      LdvGcG+G+++  +  +g +  vg+D+++ +l   +++++   +++ +  ++   +e+lp  +  fD v+s  vl h   p + l +++  L p
       CTQ28822.1 127 LDVGCGSGYHMWRMIGAGaHLAVGIDPTQLFLcqfEAVRKLLGNDQ-RAHLLPLGIEQLPALE-AFDTVFSMGVLYHRRSPLDHLWQLKDQLAP 218
                      8**************888899999**99999977766666666666.5889********9766.9***************************** PP

                      EEEEE CS
  Methyltransf_11  91 gGllv 95 
                      gG lv
       CTQ28822.1 219 GGELV 223
                      **998 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   5.9e-09   1.3e-05       1      99 []     127     222 ..     127     222 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 5.9e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieyt.gvDispsai...edakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnir 90 
                      L++GcG+G  + ++  +  ++++  g+D+ + ++   e+ ++ l   ++ +   + +e+l +l     ++fD+v++ +vl h + + + l +++
       CTQ28822.1 127 LDVGCGSGYHMWRMIGA--GAHLAvGIDPTQLFLcqfEAVRKLLGNDQRAHLLPLGIEQLPAL-----EAFDTVFSMGVLYHRRSPLDHLWQLK 213
                      8*******999999999..888877*********66666666666666656666666666555.....69************************ PP

  Methyltransf_12  91 klLkpgGrl 99 
                      + L+pgG l
       CTQ28822.1 214 DQLAPGGEL 222
                      *******76 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   5.9e-08   0.00013      51     173 ..     111     233 ..     107     254 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.9e-08
                 HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH..HHHHTS-SSS-EEEEES-GGG---..--SEEEEES-GGGTSGGGH CS
        CMAS  51 ldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklak..krvdeldlerkvevklldyedlde..kvdrvvsvgafehvgkeny 145
                  +++l  l+   G t+Ld+GcG G+ + r++   +++ +++ +   q  l++  ++ + l+++++++++ l+ e+l+    +d v s+g++ h   ++ 
  CTQ28822.1 111 WERVLPHLSDLTGRTILDVGCGSGYHMWRMIGA-GAH-LAVGIDPTQLFLCQfeAVRKLLGNDQRAHLLPLGIEQLPAleAFDTVFSMGVLYHR--RSP 205
                 556666677778*******************99.666.45666666666665314445578899999999******9877***********994..455 PP

                 HHHHHHHHHHS-TT-EEEEEEEEE--HH CS
        CMAS 146 dtffkklkkllkedGllllhtitslhkk 173
                  ++  +lk+ l ++G l+l+t++    +
  CTQ28822.1 206 LDHLWQLKDQLAPGGELVLETLVVEGDE 233
                 6677789999999***999999876555 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.9e-05     0.066      73     112 ..     122     159 ..     112     249 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.9e-05
                 TT-EEEEES-TTSHHHHHHHHHHCTTC.EEEEEESBHHHHH CS
        PCMT  73 kgarvLevGsGsGyltavlarlvgekg.rvvsierikelve 112
                  g  +L+vG+GsGy+   + r++g+ + ++v+i+ ++ +  
  CTQ28822.1 122 TGRTILDVGCGSGYH---MWRMIGAGAhLAVGIDPTQLFLC 159
                 5789**********9...77888876546899987665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2508.98
//
Query:       CTQ28823.1  [L=247]
Description: copper homeostasis protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-76  254.3   0.0      8e-76  254.0   0.0    1.0  1  CutC      CutC family


Domain annotation for each model (and alignments):
>> CutC  CutC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.0   0.0   4.5e-80     8e-76       2     201 ..       3     200 ..       2     201 .. 0.98

  Alignments for each domain:
  == domain 1  score: 254.0 bits;  conditional E-value: 4.5e-80
        CutC   2 llEvcveniesllaaqaagadRvELCaalavgGltPslgvlkeaaeeakipvyvmiRPRgGdFvysdeelkamleDieaarelgldgvvlGaltadgei 100
                 +lEvc+++++++ +a+  gadR+ELCaa+++gGltPs+gvl +a+e  ++pv++++RPRgGdF+y +ee++aml+Di+++r+lg++g+v+G+l+adg++
  CTQ28823.1   3 VLEVCCYSMACAREAERCGADRIELCAAPQEGGLTPSYGVLVSAREAITLPVHPIVRPRGGDFCYTEEEFAAMLNDIRMVRDLGFPGLVTGVLDADGQV 101
                 58************************************************************************************************* PP

        CutC 101 DlkaleklieaaegLgvtfHrAfDvvadpeealeqlielgvervLtsGqkssalegleklaeLveqaaerieimagaGvnaenvaelakktGvaevHls 199
                 D+ +++k+++aa++L+vtfHrAfD +adp +a  +l elgv+r+LtsGq+ssa +g++ ++eL++  +  i imagaGv+a+n+  + + +Gv+evH+s
  CTQ28823.1 102 DIPRMKKIMAAAGPLAVTFHRAFDLCADPRQAWKTLGELGVKRILTSGQQSSAEKGISLITELIAAGDTPI-IMAGAGVRAANLPLFLQ-AGVKEVHSS 198
                 ***********************************************************************.************99888.9*******9 PP

        CutC 200 ak 201
                 a 
  CTQ28823.1 199 AG 200
                 85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1955.55
//
Query:       CTQ28824.1  [L=189]
Description: putative metal-binding enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-70  235.1   0.0    4.6e-70  234.9   0.0    1.0  1  YecM      YecM protein


Domain annotation for each model (and alignments):
>> YecM  YecM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.9   0.0   2.6e-74   4.6e-70       2     180 .]      10     185 ..       9     185 .. 0.98

  Alignments for each domain:
  == domain 1  score: 234.9 bits;  conditional E-value: 2.6e-74
                 GHHHHHHHHHHHHHHHHHHHHHT---TT-EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---SS--SS CS
        YecM   2 lkelledlkeFeqkiqqlakklgldlsqleiDHialRvneeetaeawkeallqegellseneiNGRpIllfkLeqplqveeqkidvvELPypkekkypq 100
                 l+++++dl++F++++q+++++lgl+ + l++DHi+lR+++++tae+w+++l q+g+llsen+iNGRpI+lfkL++p+ v++++ ++vELP+p+ek+yp+
  CTQ28824.1  10 LADITADLPRFSDALQRFTARLGLEIAGLDADHISLRCHQNTTAERWRRGLEQCGTLLSENMINGRPICLFKLAEPVCVAHWRFHIVELPWPGEKRYPH 108
                 57899********************************************************************************************** PP

                 -EEEEEEEE--S-GGGHHHHHHHTS-HHHHHST...T-EEEE--------------EEEESSS-EEEEESS-HHHHHHH- CS
        YecM 101 egwEHielVlpseaqeleeealallekeallkkelegikvklsspkgekerLpnptlaikkneitiKlHphslkeivesE 180
                 egwEHie+Vlp+++ +l+++alall++  l ++   gi vk+sspkge+erLpnptla++++++t+K+Hp+s+++iv+sE
  CTQ28824.1 109 EGWEHIEIVLPGDPATLNARALALLADDGLSQP---GIVVKTSSPKGEHERLPNPTLAVTDGSVTVKFHPWSIEQIVASE 185
                 ****************************99988...9*****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1400.29
//
Query:       CTQ28825.1  [L=577]
Description: arginyl-tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-172  573.1   0.6   2.2e-172  572.8   0.6    1.1  1  tRNA-synt_1d     tRNA synthetases class I (R)
    2.9e-34  117.8   0.0    1.9e-33  115.2   0.1    2.2  2  DALR_1           DALR anticodon binding domain
    1.2e-22   80.3   0.1    4.1e-22   78.6   0.1    2.0  1  Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
     0.0025   17.2   0.1     0.0039   16.6   0.1    1.2  1  tRNA-synt_1e     tRNA synthetases class I (C) catalytic domai
  ------ inclusion threshold ------
      0.035   12.8   0.1      0.064   12.0   0.1    1.5  1  tRNA-synt_1g     tRNA synthetases class I (M)
      0.072   11.3   0.0       0.11   10.8   0.0    1.1  1  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)


Domain annotation for each model (and alignments):
>> tRNA-synt_1d  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  572.8   0.6  7.2e-176  2.2e-172       2     349 .]      96     446 ..      95     446 .. 0.98

  Alignments for each domain:
  == domain 1  score: 572.8 bits;  conditional E-value: 7.2e-176
                   HHHHHCCTTTT.---SST-EEEEE----BTTS--BHHHHHHHHHHHHHHHHHHHCT-EEEEEE--B-SSTCHHHHHHHHHHHTTTTTTS-----SCC CS
  tRNA-synt_1d   2 vssiLvqkrklqkksrekkkvvvdfssPniakemhvGhLrstiiGdavsrlleflGydvirlnhvGDWGtqfGlLiaylekkqdekllqeqelqdLe 98 
                   v+ +L ++r+ ++  ++ +++vvd+s+Pn+akemhvGhLrstiiGda +r+leflG++vir+nhvGDWGtqfG+Liaylek+q+e+ ++e+ l+dLe
    CTQ28825.1  96 VNRALQSERL-GVTKPQAQTIVVDYSAPNVAKEMHVGHLRSTIIGDASVRTLEFLGHKVIRANHVGDWGTQFGMLIAYLEKQQQEN-AGEMALADLE 190
                   6677878777.5999***********************************************************************.67******** PP

                   CHHHHHHHHCCCSHCCCHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHCT---EC...--CCCCCCCHHHHHHHHHCTT-EEECTTCEEE CS
  tRNA-synt_1d  99 afykeakkdydeeeifaerarnyvvkLqsgdedirklwkllvditrtelqklydrldvtlie...rGeslykeslneivkelkkkglvkesdGalvv 192
                   +fy+eakk+yde+e faerar+yvvkLq+gde++ ++w++lvdit+ ++q++ydrl+vtl++   +Gesly+++l++iv++lk+kgl++es+Ga+vv
    CTQ28825.1 191 GFYREAKKHYDEDEAFAERARSYVVKLQGGDEYFLQMWRKLVDITMSQNQITYDRLNVTLTRddvMGESLYNPMLPGIVADLKAKGLAVESEGATVV 287
                   ************************************************************************************************* PP

                   EECCC....TSSCCEECC-TTS-B-HHHHHHHHHHHHHHTT--SEEEEEEECCCHHHHHHHHHHHHCTTSSTTTSEEEEEEE--EE-TTSSBSBCSS CS
  tRNA-synt_1d 193 fldef....gkrlgvvvqksDGgylytttDiaaakerkeelkadkvlyvidsrqslhlqqiflilkkigyvpeskdlehanfGmvlgkdkkkfktrk 285
                   flde+    g+++gv++qk+DGgylytttDia+ak+r+e+l+ad+vly+idsrq++hl+q++ i++k+gyvp+s++leh++fGm+lgkd+k+fktr+
    CTQ28825.1 288 FLDEYknkeGEPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVLYYIDSRQHQHLMQAWTIVRKAGYVPDSVPLEHHMFGMMLGKDGKPFKTRA 384
                   ************************************************************************************************* PP

                   STC-BHHHHHHHHHHHHHHHHCCCCCCTS-CCCCHCHHHHHHHHHHHHCCCCTS-TTS-EE--H CS
  tRNA-synt_1d 286 GetvkLadlLdealeralqlikeknkdkvlqadelekvaeavgvgaikyaDlsknrindyifdw 349
                   G+tvkLadlLdealera++l++ekn+d  ++adele++a++vg+ga+kyaDlsknr++dy+fdw
    CTQ28825.1 385 GGTVKLADLLDEALERARRLVAEKNPD--MSADELENLAKVVGIGAVKYADLSKNRTTDYVFDW 446
                   ***************************..**********************************9 PP

>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.53   1.6e+03      36      71 ..     388     423 ..     374     425 .. 0.83
   2 !  115.2   0.1   6.3e-37   1.9e-33       1     119 []     460     577 .]     460     577 .] 0.96

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.53
                 HHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHH CS
      DALR_1  36 keLlkalaqfpevleeaaeelephklaeylyeLaat 71 
                  +L+  l +  e   + + e +p++ a+ l++La+ 
  CTQ28825.1 388 VKLADLLDEALERARRLVAEKNPDMSADELENLAKV 423
                 5778888888888888999999**********9985 PP

  == domain 2  score: 115.2 bits;  conditional E-value: 6.3e-37
                 HHHHHHHHHHHHHHTTCTTCCCCHCCHCCS-SHHHHHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHCTSTTSCTHHH.HHHHHHHHH CS
      DALR_1   1 vqyahaRiksilrkaeeegekleeealalleeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeelaaaRLaLvka 99 
                 +qya++R+ s++rka+ ++++   +   +  e++e +L+++l+qf+e+l+ +a+e +ph+++ yly+La  f+ fY+++++l +e+ee++++RL+L+ +
  CTQ28825.1 460 MQYAYTRVLSVFRKAGIDENAMIDAPVVI-AEDREAQLAARLLQFEETLSVVAREGTPHVMCAYLYDLAGLFSGFYEHCPILSAESEETRNSRLKLALL 557
                 6***************9998776666666.999****************************************************************** PP

                 HHHHHHHHHHHTT----S-- CS
      DALR_1 100 vrqvLangLdlLGieapekm 119
                 ++++L+ gLd LGie++e+m
  CTQ28825.1 558 TAKTLKLGLDTLGIETVERM 577
                 *******************9 PP

>> Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.1   1.4e-25   4.1e-22       3      85 .]       7      87 ..       4      87 .. 0.96

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 1.4e-25
                     HHHHHHHHHHHHHSS-HHHHGGG-E-.SSGGG-SEEEEGGGG--TT-..-HHHHHHHHHHT---TTTEEEEEEETT.EEEEEE CS
  Arg_tRNA_synt_N  3 lkeaiaealkkaagadleeeeiviekpknpkfGDyatnvamqlakklkknPreiAeeiaeklekseiiekvevagpGFiNffL 85
                     l e++++al +a   ++++ e+++ ++++ +fGDy+ n  m  akkl+++Pr++Ae++ ++l+ ++i  kve+agpGFiN+fL
       CTQ28825.1  7 LSEKVSQALIAA--GAPADCEPQVRQSAKVQFGDYQANGVMAVAKKLGMAPRQLAEQVLSHLDLNGIANKVEIAGPGFINIFL 87
                     67899*******..689999**************************************************************8 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.3e-06    0.0039      14     134 ..     119     291 ..     107     314 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.3e-06
                   EEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHH...HHHHHHHTTS-.................................... CS
  tRNA-synt_1e  14 vCGptvydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDk...iikrareeeks.................................... 71 
                      p v  ++h+Gh Rs+++ D   r+l+ lg++v   + v D   +   +i+  ++++++                                    
    CTQ28825.1 119 YSAPNVAKEMHVGHLRSTIIGDASVRTLEFLGHKVIRANHVGDWGTQfgmLIAYLEKQQQEnagemaladlegfyreakkhydedeafaerarsyvv 215
                   45688999**********************************9987622234433333333799********************************* PP

                   ............HHHHHHHHHHHHHHHHHHTT----SB.--BGGGGHHHHHHHHHHHHHTTSEEE-TTS-EEE-GG CS
  tRNA-synt_1e  72 ............vkelaekfieefkkdleaLnvlkptl.eprvsekvdeiielvekliekgyaYavsdgdvyfdvs 134
                               +++l++  +++ +  ++ Lnv  +       s + + + ++v+ l +kg a +++  +v+f  +
    CTQ28825.1 216 klqggdeyflqmWRKLVDITMSQNQITYDRLNVTLTRDdVMGESLYNPMLPGIVADLKAKGLAVESEGATVVFLDE 291
                   ***********999*********99*******97654404455667788999***********9999888888554 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.1e-05     0.064       6      52 ..     120     166 ..     115     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
                   --B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHH CS
  tRNA-synt_1g   6 alpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpi 52 
                   + p +  ++H+Ghl+++i++D+ +R     g++v+       +Gt+ 
    CTQ28825.1 120 SAPNVAKEMHVGHLRSTIIGDASVRTLEFLGHKVIRANHVGDWGTQF 166
                   56778899*************************99887777777765 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.5e-05      0.11      22     112 ..     112     201 ..     101     210 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.5e-05
  tRNA-synt_1  22 kkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgreefrekvrewkaeya 112
                  +++ ++    P+v  ++H+Gh   +++ d  +r+ ++ G++v +   +   G    + +   l ++++++  +++ ++     re k++y 
   CTQ28825.1 112 AQTIVVDYSAPNVAKEMHVGHLRSTIIGDASVRTLEFLGHKVIRANHVGDWGTQFGMLIA-YLEKQQQENAGEMALADLEGFYREAKKHYD 201
                  5556667789********************************998877777777776664.345666666777777777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4363.93
//
Query:       CTQ28826.1  [L=379]
Description: putative cytoplasmic protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.4e-106  356.5   5.5   1.8e-106  356.1   5.5    1.2  1  Glyco_hydro_88  Glycosyl Hydrolase Family 88


Domain annotation for each model (and alignments):
>> Glyco_hydro_88  Glycosyl Hydrolase Family 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.1   5.5    1e-110  1.8e-106       2     343 ..      38     377 ..      20     378 .. 0.99

  Alignments for each domain:
  == domain 1  score: 356.1 bits;  conditional E-value: 1e-110
                     HHHHHHHHHHHTTT--CCTSSTTCCE.HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCTTS-CTTSGGGTGHHHHHHHHHHHH-THHHHHH CS
  Glyco_hydro_88   2 ikkvngsfikkkeegkvielkkenewewtnGvflsglleayeatgdkeyldyakawadslideggktelelDdidigllllllyeltkderykea 96 
                     ik++ g+f+ + ++g++i++k ++ wewt+Gv l+g++++y++tgd e++d++++w+ + + eg++ ++++++++++l+l++++e+t++  y  +
      CTQ28826.1  38 IKDESGQFLLRLDDGRMIDTKGWAGWEWTHGVGLYGIYQYYQQTGDIEMRDIIDRWFADRFAEGAT-TKNVNTMAPFLTLAYRFEETGRMAYLPW 131
                     8899999***********************************************************.**************************** PP

                     HHHHHHHHHHCS-B.TTS.B.S...BTTSTTEEETHHHHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHHHBETTTSEB-SEEETTTTSTTS.- CS
  Glyco_hydro_88  97 aeeladyvlakpprtseGgfwh...kkkepeqlWlDgLfMaipllaklskvtgepkyldeaikqflltarhlfdpetGlyyhgwdesgtedwake 188
                     +e +a++ ++++prt++Gg++h   ++++++q+W D+L+M+++ lak++k++++p+y++ea++qfll+ ++l+d etGl++hgw+++g++++a +
      CTQ28826.1 132 LESWAEWAMHEMPRTEQGGMQHmtlAEENHQQMWDDTLMMTVLPLAKIGKLLNRPQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARA 226
                     *********************************************************************************************** PP

                     -BHHHHHHHHHHHHHHHHH..S-TT-TTHHHHHHHHHHHHHHHHCTS-TTSSEBSBTT-TTTTSSBEHHHHHHHHHHHHHHHHTTSS-HHHHHHH CS
  Glyco_hydro_88 189 fWaRgngWalaglaevlel..LpekekarqelinllrdlvkalaklqdeeglWhqilddgskesylEtSatalfvygLakgvnkglldkkkykkv 281
                      WaRgn+W++++++++lel  Lpe ++ r++li +l++++ alak+qd++glWh++ldd++  sylE+Sata+f+yg++k+v+k+++ +++y  v
      CTQ28826.1 227 RWARGNSWLTMVIPDFLELvdLPEGNAVRRYLITVLDAQIAALAKCQDDSGLWHTLLDDPH--SYLEASATAGFAYGILKAVRKRYV-GQHYAGV 318
                     ******************999****************************************..************************.******* PP

                     HHHHHHHHHHCEE-TTS-EEE-SEETS--SCTC.HHHHTS-EESS-HHHHHHHHHHHHHHHHH CS
  Glyco_hydro_88 282 aqkawkallkkaveedGqllvkqvsvgtgiggd.dyYksvdvnsiedygvgafllalievlrl 343
                     a+ka+++++++ +++ G+  + q+s+gtg+g d d+Y++ + +s+ +yg+++++l+l+e+lr 
      CTQ28826.1 319 AEKAIRGIVQN-ISPQGE--LLQTSFGTGMGSDlDFYRQIPLTSM-PYGQAMAILCLTEYLRK 377
                     ***********.******..*************************.**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2568.96
//
Query:       CTQ28827.1  [L=527]
Description: Oligogalacturonide transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-53  179.3  35.6    1.1e-52  179.0  35.6    1.1  1  MFS_2          MFS/sugar transport protein
    5.6e-17   61.7  34.1    5.6e-17   61.7  34.1    2.4  2  MFS_1          Major Facilitator Superfamily
  ------ inclusion threshold ------
        2.1    7.8   6.5        4.4    6.7   6.5    1.5  1  DUF3959        Protein of unknown function (DUF3959)


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.0  35.6   1.9e-56   1.1e-52       1     426 [.      13     451 ..      13     452 .. 0.92

  Alignments for each domain:
  == domain 1  score: 179.0 bits;  conditional E-value: 1.9e-56
       MFS_2   1 syglgalaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrw.....GrrrPwlllsaiilavsiillftppelsqs 94 
                 +yg+g++  + +++l a++ll+Fyt   gl+++ ++l++ +ar++Da++ p++G+l+d+  t+w     Grr+ +  l +i+ ++s+ +++   e    
  CTQ28827.1  13 AYGAGDFLGAGTTALTAAWLLYFYTTFCGLTPIEATLIFAAARVLDAVVSPLMGFLTDNFGTTWlgkrfGRRK-FFILLGIPCVFSYSAMWVG-E---- 105
                 59*********************************************************88877766669999.77777788888*******9.4.... PP

       MFS_2  95 akfiwllvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgt 193
                   f ++l+ty+l++++yt++ +py +lvp++t+d +++t++++ r  ++ +  +la++l+++l+ +lg   ++++ ++++ l++++L +++  +v+ +t
  CTQ28827.1 106 MGFWYYLATYLLFDMVYTMILVPYETLVPEMTDDFKQKTKFSGARISMAQMSAILASFLPGILLSWLGK--DNASSFFYASLVFSVLCAVMLTLVWCFT 202
                 589*****************************************************************7..**************************** PP

       MFS_2 194 kervem....rkkekteqkeklslleqlk.......evfrnraflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwq 280
                  er  +    +  +++++k+ l+l + l+       +++r + f+  l ++l  + a+ v n+ + Yy+ +vl  +++ as++l+++ i ++++++ + 
  CTQ28827.1 203 WERPREawseAALRAEAEKQNLTLAQSLNrlvielsSTLRIKIFRQHLGMYLGGYIAQDVFNAVFTYYVVFVLMqEAAVASNLLGTMAIFQFIAVIAMI 301
                 *999888887677888889999988876511111115689999*******************************99999******************** PP

       MFS_2 281 plakrlg...kkntyllgalltivllvlvlll.qpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglg 375
                 pl+ r+g    ++++++ + l  + ++l++ +     + l+l++ ++ag+g g+++++pw +++ ++D++e  tG+rreg+f+++ +++ k+  + +++
  CTQ28827.1 302 PLCIRFGpapSYRMVVVLFGLSSLSYALLYYAgLSDVYSLLLLISAVAGLGRGGINYVPWNTYTYIADVDEAITGQRREGIFAGIMTLTRKASQAGAVM 400
                 *******77777777777777777888888884455566778889****************************************************** PP

       MFS_2 376 vsgllLsafgyrakasvqspqvvlalrllyavlpavlllvallllvrypln 426
                 ++g++ +++g+ +++  q++ v +++ l+++v   v l+ ++l+ +r++ln
  CTQ28827.1 401 LVGIIMQLSGFVSGQKIQPEGVSHTILLILSVGTLVVLACGFLVSLRFKLN 451
                 *************************************************98 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7  34.1   9.3e-21   5.6e-17      11     324 ..      23     364 ..      16     391 .. 0.79
   2 !    3.7   2.0    0.0039        24     248     292 ..     397     443 ..     381     452 .. 0.57

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 9.3e-21
       MFS_1  11 arsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsd.........rfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGl 97 
                 + ++l++a  l ++++  g++p e+ l++++  ++ av s+++G+l+d         rfGrr++++l  +  +++ + ++++   ++w+ l+  +l  +
  CTQ28827.1  23 GTTALTAAWLLyFYTTFCGLTPIEATLIFAAARVLDAVVSPLMGFLTDnfgttwlgkRFGRRKFFILLGIPCVFS-YSAMWVgeMGFWYYLATYLLFDM 120
                 4444555555546666678*****************************99999999889****999999999999.6666666899************* PP

       MFS_1  98 gagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafv...lfllllpeepperkrkspkeee. 188
                  + +++    +l+ +++ + +++++  g   ++++++ail+  l g+l+s+lg    ++ fy+  ++s+l++v   l++++ +e+p+e + ++  + e 
  CTQ28827.1 121 VYTMILVPYETLVPEMTDDfKQKTKFSGARISMAQMSAILASFLPGILLSWLGkdnASSFFYASLVFSVLCAVmltLVWCFTWERPREAWSEAALRAEa 219
                 ******************************************************9988888888888888877777999999**************998 PP

       MFS_1 189 .......kgtgpaplvpawkallkdpvlw....illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrr 276
                        ++  ++ +++ +++ l+ + +     ++l + +   ++++ +++++ + l++    +    +++++a+++++++i+++ +       ++ r+
  CTQ28827.1 220 ekqnltlAQSLNRLVIE-LSSTLRIKIFRqhlgMYLGGYIAQDVFNAVFTYYVVFVLMQEAAVA--SNLLGTMAIFQFIAVIAMIPLCIRFGPAPSYRM 315
                 77777776666666666.5555555533222235777777776444445555555567777777..444445999999987775555554444556899 PP

       MFS_1 277 lllallllllaalglallavtssavllllvlvliGfglgfv.fpsllal 324
                  ++ ++l +l++++l+++++++ ++llll+++++G+g g + +++++++
  CTQ28827.1 316 VVVLFGLSSLSYALLYYAGLSDVYSLLLLISAVAGLGRGGInYVPWNTY 364
                 999999999999999999999999999999999***6666545555554 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0039
       MFS_1 248 lllallalvgailallagrlsdr..lgrrrrlllallllllaalgla 292
                 ++++l++++++ +++++g+ ++   +++ + l+l+++ l+++a+g++
  CTQ28827.1 397 GAVMLVGIIMQLSGFVSGQKIQPegVSHTILLILSVGTLVVLACGFL 443
                 24666677776667777777766333334444444444444444433 PP

>> DUF3959  Protein of unknown function (DUF3959)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.5   0.00074       4.4      12     109 ..     229     332 ..     223     350 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00074
     DUF3959  12 ilkqiplelslflggllfftslgsyytkktssricswlaytifitlllgiwdqyvtassllanaki...aaciaviplilrf......rtyaitlglla 101
                  l+++ +els  l   +f   lg y    +   ++    +t ++ ++l+   + + as ll    i    a ia+ipl +rf      r   + +gl +
  CTQ28827.1 229 SLNRLVIELSSTLRIKIFRQHLGMYLGGYIAQDVFNA-VFTYYVVFVLMQ--EAAVASNLLGTMAIfqfIAVIAMIPLCIRFgpapsyRMVVVLFGLSS 324
                 577788999999999999999****999999999986.588899998874..55677888766554222799999*****9855544456667788888 PP

     DUF3959 102 lwgallwd 109
                 l  all+ 
  CTQ28827.1 325 LSYALLYY 332
                 88888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3695.19
//
Query:       CTQ28828.1  [L=142]
Description: universal stress protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-13   50.2   0.0    4.1e-13   50.0   0.0    1.0  1  Usp       Universal stress protein family
  ------ inclusion threshold ------
       0.11   13.1   0.1       0.16   12.5   0.1    1.2  1  PSD4      Protein of unknown function (DUF1592)


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   4.6e-17   4.1e-13       2     140 ..       3     137 ..       2     138 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 4.6e-17
                 -SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHH CS
         Usp   2 ykrIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevae 100
                 y + lVav  ++es+ ++++A+  a+  +a++ l++   +++ +   +a+  +   e ++ee+++ ++  + a+ a  ++++ ++  g+ ++ i ++ +
  CTQ28828.1   3 YTHLLVAVAPTPESQVLIKKAVSIARPVNAKVSLITLATDPELYNQFAAPMMENLREVMQEETREFLN--ELARHADYPIERMTIACGELGHHIKDFCR 99 
                 889*******************************************9999999999999999988877..59*************************** PP

                 HTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEE CS
         Usp 101 eedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvV 140
                 ++ +dl+++G + +s +sr      +++++ ++ ++Vl+V
  CTQ28828.1 100 SHRVDLVICGNHNHSLFSR--ATCSAKSIVGSCGVDVLLV 137
                 *******************..7789999999999999998 PP

>> PSD4  Protein of unknown function (DUF1592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.8e-05      0.16      70     103 ..      38      75 ..      31      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.8e-05
        PSD4  70 tvekdkelfpef....dealreamreetelfveevlee 103
                 t++ d+el+++f     e+lre m+eet++f++e+ ++
  CTQ28828.1  38 TLATDPELYNQFaapmMENLREVMQEETREFLNELARH 75 
                 6788999***998888999**************97664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1128.28
//
Query:       CTQ28829.1  [L=476]
Description: trehalose-6-phosphate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.4e-146  487.3   0.0   5.1e-146  487.1   0.0    1.0  1  Glyco_transf_20  Glycosyltransferase family 20
  ------ inclusion threshold ------
       0.18   12.0   3.0        1.4    9.1   1.3    2.3  2  Metal_resist     Heavy-metal resistance


Domain annotation for each model (and alignments):
>> Glyco_transf_20  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  487.1   0.0  5.7e-150  5.1e-146      27     473 ..      19     454 ..       4     455 .. 0.96

  Alignments for each domain:
  == domain 1  score: 487.1 bits;  conditional E-value: 5.7e-150
                      ECCGSSHHHHHCCCHHCCC-EEEEEEECCES-CCC..HCCCCHHHCCCCCEEEEEE-HHHHHHHCCCHHHHCHHHHHTT-GG....G----HHH CS
  Glyco_transf_20  27 lkkssgglvsalkglkeetevvwvgwlgvevdeseeakekvskeleekfsvvpvflsdekveeyyngfsksvLWpllHYklpdsseekefersa 120
                       k s+ggl++ + g+ +++ ++w+gw+g+  d+++     +++    ++s++ + l++++++eyyn+fs++vLWp +HY+l+       f+r+a
       CTQ28829.1  19 KKSSAGGLAVGILGALRAAGGLWFGWSGEIGDDQQ----PLKQVSRGNISWASFNLNERDHDEYYNQFSNAVLWPAFHYRLD----LVSFQREA 104
                      367899************************99999....55566699***********************************....99****** PP

                      HHHHHHHHHHHHHHHHCC--TT-EEEEESGGGTTHHHHHHHCCTTSEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHH CS
  Glyco_transf_20 121 wdaYvkvnklFAdkiveeikdgdliwvhDYhLmllPellRkkledakigfflHiPFPsseifriLpvreeilegllgadliGFhtedyarhFls 214
                      w+ Y +vn + Adk++  i+++d++w+hDYhL+ +++ lRk+  +++igfflHiPFP+ eif++Lp ++e+le+l+++dl+GF+te++   Fl+
       CTQ28829.1 105 WEGYLRVNAMLADKLLPLIEPDDTLWIHDYHLLPFASELRKRGVNNRIGFFLHIPFPTPEIFNALPPHAELLEQLCDYDLLGFQTESDRTAFLD 198
                      ********************************************************************************************** PP

                      HHHHHSSEEEECTTEEEEETTEEEEEEE------HHHHHHHCCSCHHHHHHHHHHHHT.TTSEEEEEEEEC-GGG-HHHHHHHHHHHHHH-GGG CS
  Glyco_transf_20 215 ccsrllgleveskrggveykgrkvsvkalpigidverlesalkkesvsekvkelkerfenkkklilgvDrlDyikGvkqkllaferfLeeypel 308
                      ++   ++l+   +++  +++g+ +s++++pigid++++++ +k  ++  k+++lk++++n +k i++v+rlDy+kG+++++la+e++Le+yp++
       CTQ28829.1 199 SIAMQTRLSDLGDKR-YQAWGKAFSTEVYPIGIDPDEITRNAK-GPLPPKLAQLKNELKN-VKNIFSVERLDYSKGLPERFLAYETLLEKYPQH 289
                      ***999999999976.9***********************998.99************88.8******************************** PP

                      TTTEEEEEEEEB-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEEES---HHHHHHHHHH-SEEEE--SSBSS-CHHHHHHHCSTT.T-- CS
  Glyco_transf_20 309 rgkvvlvqiavpsredveeyqelekeveelvgrINgefgtldytPvvylersldfeeliallaaadvllvtslRdGmnlvakeyvvcqqe.kkg 401
                      +gk+ + qia++sr+dv++yq++++++e  +grINg+fg+l++tP++yl++++d++ l+++++++dv lvt+lRdGmnlvakeyv++q+  + g
       CTQ28829.1 290 HGKIRYTQIAPTSRGDVQAYQDIRHQLETAAGRINGQFGQLGWTPLYYLNQHFDRKLLMKVFRYSDVGLVTPLRDGMNLVAKEYVAAQDPdNPG 383
                      ****************************************************************************************98689* PP

                      EEEEETTBGGGGT-TTTSEEE-TT-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH CS
  Glyco_transf_20 402 vLiLSeFaGaaqsLkdaailvNPwdieevaeaikeaLkmseeerkkrekkllkqvskhdvqsWaesflselk 473
                      vL+LS+FaGaaq+L++ a++vNP+d +eva+a+++aL+m+ +er  r++ +l+ + ++d+++W+  f+++l+
       CTQ28829.1 384 VLVLSQFAGAAQELTS-ALIVNPYDRDEVAAALDRALSMPLAERIARHSAMLDVIRENDIHNWQARFVEDLQ 454
                      ***************6.6****************************************************97 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.024   2.2e+02       5      51 ..      26      78 ..      25      86 .. 0.77
   2 ?    9.1   1.3   0.00015       1.4      72     118 ..     393     439 ..     387     447 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.024
                  XXXXXXXXXXXXXXXXXXXXXXTTHHBH.......HHHHHHHS-TTHHHHHHH CS
  Metal_resist  5 lNlfllGalvgaalrgpggpppggparg......raellraalgLpaeqrael 51
                  l++ +lGal +a   ++g+ ++ g++++      r+++  a  +L++++++e+
    CTQ28829.1 26 LAVGILGALRAAGGLWFGWSGEIGDDQQplkqvsRGNISWASFNLNERDHDEY 78
                  67889999999999999999999988777777777777777777777777665 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00015
                   HHHHHHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
  Metal_resist  72 arrelaallaaepfDaaaieaalaeiraaqaalraqieeallefaat 118
                   a +el ++l  +p+D++ ++aal+++     a r +++ a+l+++++
    CTQ28829.1 393 AAQELTSALIVNPYDRDEVAAALDRALSMPLAERIARHSAMLDVIRE 439
                   67999*********************999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3759.18
//
Query:       CTQ28830.1  [L=262]
Description: trehalose-6-phosphate phosphatase, biosynthetic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-55  187.5   0.0    2.4e-55  187.2   0.0    1.1  1  Trehalose_PPase  Trehalose-phosphatase
    4.7e-11   42.9   0.0    7.5e-06   25.9   0.0    2.1  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
    6.9e-05   22.5   0.0    0.00026   20.6   0.0    1.8  1  S6PP             Sucrose-6F-phosphate phosphohydrolase
     0.0076   16.6   0.5       0.22   11.8   0.5    2.5  1  Hydrolase        haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Trehalose_PPase  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.2   0.0   5.5e-59   2.4e-55       1     229 [.      18     230 ..      18     234 .. 0.95

  Alignments for each domain:
  == domain 1  score: 187.2 bits;  conditional E-value: 5.5e-59
                      EEETBTTTB---SSGGG--B-TTHHHHHHHHHTTS-..EEEE-SS-HHHHHHHH---SSEEEEGGGTEEE-TT--EEE-HHHHTTHHHHHHHHH CS
  Trehalose_PPase   1 flDydGTlspivedpdaavpssellslLkkLasdpknvvaivSGrslkeeellvkvpelglaaeHGaeirspsgedwenqaevedlewlkevke 94 
                      f+D dGTl +i ++pd++v+++++l++L++La++  ++va++SGrs++e ++l  + +l+la+ HGae+r+ +g++      ++ ++ ++e+++
       CTQ28830.1  18 FFDLDGTLADIQPHPDQVVIPDSTLQALNALAQQQGGAVALISGRSMAELDALTHPWRLPLAGVHGAERRDINGKTYIV---SLPTALRDEIAA 108
                      89************************************************************************88776...************ PP

                      HHHHHHTTSTT-EEEEETTEEEEE-TT--TT..THHHHHHHHHHHHHHH.--EEEE-SSEEEEE-S---HHHHHHHHHHTS--------EEEEE CS
  Trehalose_PPase  95 ileektertpGsyiEekkfalsvHyrnaddeelqakelaehlesvltdkpdlevtqgkkvvevrpqgvsKGkaverlleslgsadseddfvlci 188
                       l +++e++pG  +E k++a+++Hyr+a+++    ++++e  +++++++p l+++ gk+vve++p+gv+KG+a+++++++ ++a    + ++++
       CTQ28830.1 109 ELTSALEALPGCELESKEMAFALHYRQAPQQ---QSAVLELAQRIVQRYPLLALQLGKCVVEIKPRGVNKGEAITAFMQEAPFA---GREPVFV 196
                      ******************************9...899999********************************************...6667777 PP

                      E-SSTTHHHHTTS-TT...-EEEEE--TTS---EES-SEEE CS
  Trehalose_PPase 189 GDdrtDedmFsvlrktkesgvsievsavevgskpskakysl 229
                      GDd+tDe  Fsv+++   +g+s++v+a e     ++a ++l
       CTQ28830.1 197 GDDLTDEAGFSVVNQL--QGMSVKVGAGE-----TQAHWRL 230
                      ****************..*******9997.....5555555 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.7e-09   7.5e-06       1      72 [.      17      92 ..      17     117 .. 0.80
   2 !   15.3   0.0   2.9e-06     0.013     156     227 ..     145     218 ..     121     228 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.7e-09
                 EEEEIIIIIS-.....TTS---HHHHHHHHHHHH.TTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEEECTTTE CS
  Hydrolase_3  1 ialDlDGTLln.....sdkkisektkeaikklke.kgikvviATGRslravlpvleelgldlpvialNGaliddekgk 72
                 +++DlDGTL +     ++  i+++t +a++ l + +g  v++ +GRs+ ++  + +     lp+ +++Ga  +d +gk
   CTQ28830.1 17 FFFDLDGTLADiqphpDQVVIPDSTLQALNALAQqQGGAVALISGRSMAELDALTHPWR--LPLAGVHGAERRDINGK 92
                 59********9999955555**********986549***************99999777..66888888877444444 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.9e-06
                  HHHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHS....SEEEE CS
  Hydrolase_3 156 elekelksklnklltitssskgyleimpkgvsKgtalkklakelnisleeviafGDgeNDieMLeaa....glgvA 227
                  el++++ ++++      + +k ++ei p+gv+Kg+a++++++e  +   e + +GD+  D + ++++    g++v 
   CTQ28830.1 145 ELAQRIVQRYPL--LALQLGKCVVEIKPRGVNKGEAITAFMQEAPFAGREPVFVGDDLTDEAGFSVVnqlqGMSVK 218
                  445555555554..677888999***********************************998888877555555555 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   5.8e-08   0.00026       5     221 ..      17     233 ..      14     247 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 5.8e-08
                 EEE-TBTTTB..........S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHHHHHHHHT----SEEEETTTTEEEE..TTEE-HHHHHHHHTT--H CS
        S6PP   5 lvsdLDntlv.........dgdnealarlnelleaeerkdvllvfaTGRsldsakellkeknllkPdvlitsvGteiyygeelvpdkaweeildekwdr 94 
                 +  dLD+tl             +++l++ln+l +   ++  ++ +++GRs+++  +l + ++l+   v     G+e    +++++ k +  +l +  + 
  CTQ28830.1  17 FFFDLDGTLAdiqphpdqvVIPDSTLQALNALAQ---QQGGAVALISGRSMAELDALTHPWRLPLAGV----HGAE----RRDINGKTYIVSLPTALRD 104
                 5679999999888733222222345555555555...6667777789****************95322....2433....578999999999***9999 PP

                 HHHHHHHHT-TTE.EE--GGG-BTTBEEEEE-TTS-THHHHHHHHHHHTTTS-EEEEEETTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGG CS
        S6PP  95 qavvealaklpeL.tlQpeeeqrehKvSyfvdkekaaevlkeleqlLekreldvkviyssgkdlDvlPkraskgeAlryLakkleleleqilvcGdsgn 192
                 ++ +e +++l++L     e+++ ++ + y   ++++ +vl+  +++ ++  l    +   +  + + P++ +kgeA++ +++   +  ++ +++Gd   
  CTQ28830.1 105 EIAAELTSALEALpGCELESKEMAFALHYRQAPQQQSAVLELAQRIVQRYPL--LALQLGKCVVEIKPRGVNKGEAITAFMQEAPFAGREPVFVGDDLT 201
                 *****99999999445557788899999999999999966555555444433..3334456689*********************************** PP

                 GHHHH..TSSSEEEE-..TT--HHHHHHHHHH- CS
        S6PP 193 Deell..ignvlgVvV..gnaqeellqwllena 221
                 De+ +  +++ +g  V  g  +++  +w l +a
  CTQ28830.1 202 DEAGFsvVNQLQGMSVkvGAGETQ-AHWRLADA 233
                 **9987555555554400443333.66766655 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.5   4.9e-05      0.22       3     205 ..      16     205 ..      15     210 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.9e-05
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTE.................HHHHTHHHHHHHHHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrg.................ayaigkpewltaldipp 84 
                 +++fD+dGTL + +p   +v+                    +al a a++ +ga++ +     r                  +    +++   +     
  CTQ28830.1  16 AFFFDLDGTLADIQPHPDQVVIPD--------------STLQALNALAQQQGGAVALISG---RSmaeldalthpwrlplagVHGAERRDINGKT---- 93 
                 689********9995555544443..............2334444444444444422222...22233333334444343323333333333333.... PP

                 HHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHH.HHHHH.TTGGGESEEEEHHCESSTTTSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  85 dlgaaigsaqsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetae.raanq.lGddyfdaviasdietvakpspegkva 181
                  +     +a ++   + l    al+ +   +     +e+a a+++ +a   + ++l   ++  ++  ++   lG      +  ++i+  +  + e+  a
  CTQ28830.1  94 -YIVSLPTALRDEIAAELT--SALEALPGCEL--ESKEMAFALHYRQAPQQQSAVLELAQRIVQRyPLLALqLG------KCVVEIKPRGVNKGEAITA 181
                 .222223444444444444..55555666666..7777777777767777778888888887777655444488......6667777788888899999 PP

                 HHHHHTSTGGGEEEEESSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 182 aireLqgkpeevamVGDgvnDaaa 205
                  ++e    ++e ++VGD ++D a+
  CTQ28830.1 182 FMQEAPFAGREPVFVGDDLTDEAG 205
                 999988888888999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1996.33
//
Query:       CTQ28831.1  [L=327]
Description: fused L-arabinose transporter subunits of ABC superfamily: membrane components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-44  152.5  35.6    1.2e-44  152.5  35.6    1.8  2  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
      0.023   14.6   2.0      0.033   14.1   0.6    1.9  2  PDR_CDR       CDR ABC transporter


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.4     0.052   4.7e+02     123     148 ..       9      39 ..       2      44 .. 0.61
   2 !  152.5  35.6   1.3e-48   1.2e-44       9     268 .]      57     314 ..      49     314 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.052
  BPD_transp_2 123 agallsflsaviv.....llalllvlavlll 148
                     + ++f++a i+     l++++++++ +++
    CTQ28831.1   9 GATRSTFSFARIWdqfgmLVVFAVLFIGCVI 39 
                   5566778888888888884444444444444 PP

  == domain 2  score: 152.5 bits;  conditional E-value: 1.3e-48
  BPD_transp_2   9 aailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvgltlllltg 105
                   ++  +++A G+ ++   +G ++l++++++a +++++a++++l +s l+l+++++ll+ga+ gl++g+ ++rlk++ li+tl+++ +++gl++     
    CTQ28831.1  57 ISMSGMVACGMLFCL-ASGDFDLSVASVIACAGVTTAVVINLSES-LWLGIAAGLLLGALSGLVNGFVIARLKINALITTLATMQIVRGLAY----- 146
                   677799*********.*****************************.**********************************************..... PP

  BPD_transp_2 106 itsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaGallalllg 202
                   i+s+ k +   +e +++ g+  +f+  +  +l++++++++ lll++t fGr+  a+g+neeaar++G++v r+k++ fv+sg++++ aG++la + +
    CTQ28831.1 147 IISDGKAVGIEDERFFTLGYANWFGLPAPIWLTVACLVVFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAAAGIILASRMT 243
                   *************************99999******************************************************************* PP

  BPD_transp_2 203 sippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   s++p +++g+++ +i a+vlGg+      g +  +v+G li+g+v++ +++ll i++  ++v+ g++l++++
    CTQ28831.1 244 SGQPMTSIGYELIVISACVLGGVslkggiGKISYVVAGILILGTVEN-AMNLLNISPFSQYVVRGVILLAAV 314
                   ***********************************************.*********************986 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.6   3.7e-06     0.033      40      78 ..      14      52 ..      10      60 .. 0.88
   2 ?   -2.2   0.0      0.46   4.1e+03      53      78 ..     118     143 ..     115     153 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.7e-06
     PDR_CDR 40 gyssshlwrnfgiliaflifflalyllatelisaekskg 78
                ++s + +w  fg l++f+++f+ + +++ ++ s+ ++kg
  CTQ28831.1 14 TFSFARIWDQFGMLVVFAVLFIGCVIFVPNFASFVNMKG 52
                577889***********************9999988887 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.46
     PDR_CDR  53 liaflifflalyllatelisaekskg 78 
                 + +f+i  l +++l+t+l +++  +g
  CTQ28831.1 118 VNGFVIARLKINALITTLATMQIVRG 143
                 56777777777777777777765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2363.64
//
Query:       CTQ28832.1  [L=504]
Description: fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-54  183.4   0.0      1e-32  113.5   0.0    2.2  2  ABC_tran     ABC transporter
    2.6e-13   50.5   1.5    0.00028   20.8   0.1    3.1  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00092   18.7   0.1      0.021   14.3   0.1    2.5  1  SMC_N        RecF/RecN/SMC N terminal domain
      0.001   19.0   1.1     0.0091   15.9   0.0    2.3  2  RsgA_GTPase  RsgA GTPase
     0.0072   16.0   0.5      0.023   14.4   0.0    2.0  2  AAA_29       P-loop containing region of AAA domain
     0.0093   16.0   0.5        1.3    9.2   0.1    2.6  2  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.04   13.9   0.3         11    6.0   0.0    2.3  2  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
      0.044   14.1   0.3        1.6    9.0   0.0    2.8  3  AAA_22       AAA domain
      0.046   13.4   0.1       0.39   10.4   0.0    2.0  2  AAA_15       AAA ATPase domain
      0.052   14.1   0.0      0.087   13.3   0.0    1.3  1  AAA_23       AAA domain
       0.12   12.1   0.5       0.76    9.5   0.0    2.4  2  AAA_30       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.0   6.2e-36     1e-32       1     137 []      23     172 ..      23     172 .. 0.95
   2 !   67.9   0.0   7.5e-22   1.2e-18       3     136 ..     274     427 ..     273     428 .. 0.88

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 6.2e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................esd 82 
                 l+++s+++++g+++a++GenGaGKStLlk+l+g++ pt+G++++ g+++   +++e l++ ++++ qe +l pe+tv+en                  +
  CTQ28832.1  23 LSDISFDCYPGQIHALMGENGAGKSTLLKILSGNYIPTAGHLQIGGQQMAFaNTMEALNAGVAIIYQELHLIPEMTVAENiylgqlphrggivnrsLLN 121
                 689**********************************************99899******************************999999988877666 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  e+   l++lgl+ +++t++    + LS Gq+q+v++a+al++++k++ +DEpt+
  CTQ28832.1 122 YEARLQLEHLGLDIDPETPL----KYLSIGQWQMVEIAKALARNAKIIAFDEPTS 172
                 66888899999999999999....9****************************96 PP

  == domain 2  score: 67.9 bits;  conditional E-value: 7.5e-22
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................xx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................es 81 
                  vsl+++ ge+v+++G  GaG S L+k l g ++ t G++ +dg++++  ++ +  ++ +  +p++   + + p ++vr+n                + 
  CTQ28832.1 274 PVSLSVRSGEIVGLFGLVGAGRSELMKGLFGGTQITGGQVYIDGQPVSIrKPAQAIQAGMMLCPEDrkaEGIIPVHSVRDNinisarrkhihagcliNN 372
                 59*********************************************99899**************99889999999*******999999999999944 PP

                 HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                   e+++a ++++  ++k+   ++   +LSgG +q+  l r l ++ k++llDEpt
  CTQ28832.1 373 AWEADNADQHIQSLNIKTPGPEQLIMNLSGGNQQKAILGRWLSEEMKVILLDEPT 427
                 4445555555555555555555557*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   1.1e-05     0.018       2      20 ..      36      54 ..      35      68 .. 0.90
   2 !   20.8   0.1   1.7e-07   0.00028     229     297 ..     136     201 ..      92     206 .. 0.87
   3 !   12.5   0.0     6e-05     0.097     220     296 ..     383     456 ..     337     463 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
      AAA_21  2 nvliGpNgsGKSnLLdald 20
                 +l G Ng+GKS+LL++l+
  CTQ28832.1 36 HALMGENGAGKSTLLKILS 54
                6899**************7 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.7e-07
      AAA_21 229 gqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 + e+p+  lS G+ ++  ++ al+r +   +++++DEp ++L  + +  l+++++el+++g  +i ++H
  CTQ28832.1 136 DPETPLKYLSIGQWQMVEIAKALARNA---KIIAFDEPTSSLSAREIDNLFRVIRELREEGRVIIYVSH 201
                 456677778******************...9****************************9999999999 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 6e-05
      AAA_21 220 gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296
                  + ++ ++ g e  + +lS G ++  a+l   l+     +++l+DEp  g++  + ++++ ++  l++ g+ v++++
  CTQ28832.1 383 IQSLNIKTPGPEQLIMNLSGGNQQK-AILGRWLSEEM--KVILLDEPTRGIDVGAKHEIYNVIYGLAASGVAVVFAS 456
                 555566666667778899*******.99999999999..7***********************77777789998887 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.3e-05     0.021      25     213 ..      34     217 ..      18     222 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.3e-05
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE.EEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkge.seykingkevtkke 122
                 ++ a++G+NG+GKs ll  ++      +a +l+    +++ ++  +  ++ +a v+i++++         +e+++  +++ ++   +  i +++  + e
  CTQ28832.1  34 QIHALMGENGAGKSTLLKILSGNYIP-TAGHLQIGG-QQMAFA--NTMEALNAGVAIIYQELHLI-----PEMTVAENIYLGQLpHRGGIVNRSLLNYE 123
                 57899***********9988533332.333555443.445554..688889999***99998887.....67777777776665445556666666777 PP

                 HHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEE.E-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfiv.islreemlekadklvgvtk 213
                  + +le+ g++++      +LS G+ ++v +a  +A    + a +  +De  + L ++++ ++ ++++e +++  +i+ +s+r e +   +  + v+k
  CTQ28832.1 124 ARLQLEHLGLDIDpetplkYLSIGQWQMVEIAKALA----RNAKIIAFDEPTSSLSAREIDNLFRVIRELREEGRVIIyVSHRMEEIFALSDAITVFK 217
                 7788888888887888888**********9998877....677899**************************98887758999877666666666655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.6e-06    0.0091      94     122 ..      27      56 ..      13      84 .. 0.76
   2 ?    1.1   0.3      0.19   3.2e+02      99     128 ..     282     311 ..     270     317 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.6e-06
                  HHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  94 kellkd.ktsvlvGqSGvGKStLinallpe 122
                  +  +   ++ +l+G+ G+GKStL++ l ++
   CTQ28832.1  27 SFDCYPgQIHALMGENGAGKSTLLKILSGN 56 
                  555544499*****************9988 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.19
                  TSEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelktg 128
                  ++++ l G  G+G+S L++ l + +++  g
   CTQ28832.1 282 GEIVGLFGLVGAGRSELMKGLFGGTQITGG 311
                  578889*************99998776655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.4e-05     0.023      22      39 ..      33      50 ..      22      56 .. 0.83
   2 ?   -2.0   0.1       1.9     3e+03      23      39 ..     282     299 ..     274     302 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
      AAA_29 22 kgatlltGpsGsGKSTll 39
                 +++ l+G++G+GKSTll
  CTQ28832.1 33 GQIHALMGENGAGKSTLL 50
                44889************8 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.9
      AAA_29  23 g.atlltGpsGsGKSTll 39 
                 g ++ l G  G+G S l+
  CTQ28832.1 282 GeIVGLFGLVGAGRSELM 299
                 3477789999****9886 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1   0.00078       1.3       3      22 ..      37      56 ..      36      76 .. 0.85
   2 ?    4.3   0.1     0.024        40       2      26 ..     285     309 ..     284     324 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00078
                EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge 22
                a++G   +GKStL++ l+g+
  CTQ28832.1 37 ALMGENGAGKSTLLKILSGN 56
                799*************9987 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.024
                 EEEEESTTSSHHHHHHHHHTSTEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaiv 26 
                 v+++G   +G S L++ l+g + i+
  CTQ28832.1 285 VGLFGLVGAGRSELMKGLFGGTQIT 309
                 89****************9987666 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0069        11      19      39 ..      33      53 ..      19      60 .. 0.80
   2 ?    5.5   0.1    0.0099        16      19      46 ..     282     309 ..     264     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0069
                TEEEEEEESTTSSHHHHHHHH CS
        TsaE 19 gdvilLeGdLGaGKTtlvrgl 39
                g++ +L G+ GaGK+tl + l
  CTQ28832.1 33 GQIHALMGENGAGKSTLLKIL 53
                67789************9976 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0099
                 TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve 46 
                 g+++ L G +GaG + l++gl  + +++
  CTQ28832.1 282 GEIVGLFGLVGAGRSELMKGLFGGTQIT 309
                 77899****************9988775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00099       1.6       6      25 ..      34      53 ..      31      64 .. 0.87
   2 ?    1.5   0.1       0.2   3.2e+02       6      26 ..     283     303 ..     279     341 .. 0.86
   3 ?   -2.1   0.0       2.7   4.4e+03      37      59 ..     387     412 ..     375     428 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00099
      AAA_22  6 gilvvtGesGtGKTtllrrl 25
                +i +++Ge G+GK+tll+ l
  CTQ28832.1 34 QIHALMGENGAGKSTLLKIL 53
                67789***********9966 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.2
      AAA_22   6 gilvvtGesGtGKTtllrrll 26 
                  i+ ++G +G+G++ l++ l+
  CTQ28832.1 283 EIVGLFGLVGAGRSELMKGLF 303
                 566799**********99776 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.7
      AAA_22  37 e...erpevvfvtlpsstsskdllre 59 
                 +   ++pe++ ++l++++ +k +l +
  CTQ28832.1 387 NiktPGPEQLIMNLSGGNQQKAILGR 412
                 35567888888888888877777433 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00024      0.39      19      43 ..      26      53 ..      21      55 .. 0.78
   2 ?    0.6   0.0      0.22   3.6e+02     289     363 ..     136     200 ..     111     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00024
      AAA_15 19 idlsee...ltvliGkNnsGKSsileal 43
                i+++ +   +  l G+N++GKS++l++l
  CTQ28832.1 26 ISFDCYpgqIHALMGENGAGKSTLLKIL 53
                5555555568899*************98 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.22
      AAA_15 289 deelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitT 363
                 d e+pl++ + G+ +++ ++  ++++ k          ++++EP  +L       l++ ++el ++++  +i+ +
  CTQ28832.1 136 DPETPLKYLSIGQWQMVEIAKALARNAKI---------IAFDEPTSSLSAREIDNLFRVIRELREEGR-VIIYVS 200
                 56788888888888888777766666655.........******999999999999999999988886.555555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.4e-05     0.087      20      38 ..      34      52 ..      15      55 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.4e-05
      AAA_23 20 gltlItGpNGaGKTTildA 38
                 + ++ G+NGaGK+T+l  
  CTQ28832.1 34 QIHALMGENGAGKSTLLKI 52
                688999**********975 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00047      0.76      19      82 ..      34     155 ..      30     201 .. 0.54
   2 ?   -0.5   0.2      0.52   8.5e+02      16      49 ..     281     313 ..     275     317 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00047
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa..........eelg.ieastiakllkrlk......................... 81 
                 ++++l G  G+GK+t+lk l   +    g++ +   + + A++++          +el  i+ +t+a+ ++  +                         
  CTQ28832.1  34 QIHALMGENGAGKSTLLKILSGNYIPTAGHLQIGGQQMAFANTMEalnagvaiiyQELHlIPEMTVAENIYLGQlphrggivnrsllnyearlqlehlg 132
                 58899**************97666655445555555555555555222222222222222344555444433335555555555555555555555555 PP

      AAA_30  82 ......................g 82 
                                       +
  CTQ28832.1 133 ldidpetplkylsigqwqmveiA 155
                 55555555555555555555543 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.52
      AAA_30  16 sgdrvavltGpAGtGKttalkalreaweaaggrv 49 
                 sg+ ++ l G  G+G + ++k+l    +  gg+v
  CTQ28832.1 281 SGE-IVGLFGLVGAGRSELMKGLFGGTQITGGQV 313
                 443.7889999**********9977777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3478.00
//
Query:       CTQ28833.1  [L=326]
Description: L-arabinose transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-88  295.5   0.0    4.6e-88  295.3   0.0    1.0  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    1.1e-19   71.0   0.6    1.4e-19   70.7   0.6    1.1  1  Peripla_BP_4  Periplasmic binding protein domain
     0.0015   18.9   0.0     0.0056   17.0   0.0    1.9  2  Peripla_BP_3  Periplasmic binding protein-like domain


Domain annotation for each model (and alignments):
>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.3   0.0   7.6e-92   4.6e-88       2     278 ..      26     319 ..      25     320 .. 0.99

  Alignments for each domain:
  == domain 1  score: 295.3 bits;  conditional E-value: 7.6e-92
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHHHHHHHHHHTT-SEEEEE-S-GG.HHHHHHHHHH.T-EEEEESS--B-T.... CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedlakaidllkakgidgliiatsdts.fdditakaes.gipvialedaidap.... 92 
                   lklg++++q++eP+f++++k+++ka+k++g+dv+++a++++e++++aid+l+a+g++g++i+t+d++ +++i+aka++ +++vi ++d+++++    
    CTQ28833.1  26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFDVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKlGSAIVAKARGyDMKVITVDDQFVNAkgkp 122
                   79*********************************************************************************************** PP

                   .TTS-EEEE-HHHHHHHHHHHHHHHHHHHT..G...EEEEEE-TTS.HHHHHHHHHHHHHHHTT-.GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT- CS
  Peripla_BP_1  93 .dgvPcvipddtqageestqkLiaeghkrp..i...allegpesal.takervqGflaalaeaGl.evkdvhvalgsndiedaaealnelleshPei 181
                    + vP+v++++ ++g++++q+L++e++kr+  +   a++++++ +l ta++r++G+ +al++aG+ + +++ v+++sndi++a++a n++l++hP++
    CTQ28833.1 123 mESVPLVMMAASEIGARQGQELYKEMQKRGwdVkdtAVMAITADELdTARRRTTGSIDALKAAGFpDAQIYRVPTKSNDIPGAFDAGNSMLVQHPQV 219
                   *******************************98999*****************************99****************************** PP

                   S..EEE-SSHHHHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH......-SEEEE--EEE CS
  Peripla_BP_1 182 d..aivaindeaalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqki......nkerehprvll 270
                   +  +iv++nd+++lG+v+a++++G +k+++ ++++i++v+++++L+kaq+t++++s+l++++++    G+k s+m+++++      +k++++++v+l
    CTQ28833.1 220 KhwLIVGMNDNTVLGGVRATEGQG-FKAPDVIGIGINGVDAVNELSKAQPTGFYGSLLPSPDIH----GYKTSEMLYNWVtkgvepPKFTAVTDVVL 311
                   ************************.***************************************....***************************** PP

                   EETTTHHH CS
  Peripla_BP_1 271 ipvkflke 278
                   i+++++ke
    CTQ28833.1 312 ITRDNFKE 319
                   ******98 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.6   2.4e-23   1.4e-19       2     252 ..      29     292 ..      28     297 .. 0.85

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 2.4e-23
                   EEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTT....GCTTT CS
  Peripla_BP_4   2 gvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsd....dapsg 94 
                   g++vk +++p+f++ ++ +++a k+lg++v+ +  a +d ++  ++i+++ a+g++g+++   d++  +++++ka+   ++V+++d +      +  
    CTQ28833.1  29 GFLVKQPEEPWFQTEWKFADKAGKDLGFDVIKI--AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVITVDDQfvnaKGKPM 123
                   799****************************99..*****************************************************987666667 PP

                   -CEEEEEC-HHHHHHHHHHHHHHHCTTH.....EEEEEETSCCCHHHHHHHHHHHHHHHHH..-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.. CS
  Peripla_BP_4  95 erlayvgfdneaaGelqaeylaeklggk....kgkvvilaGspgdpnaeeriegfrkvlke..ypgikivaevaganwdaekaqqalealltanp.. 183
                   e +  v     ++G+ q++ l + + ++    k + v+   +     a+ r+ g +++lk+  +p+ +i  +     +d   a +a +++l ++p  
    CTQ28833.1 124 ESVPLVMMAASEIGARQGQELYKEMQKRgwdvKDTAVMAITADELDTARRRTTGSIDALKAagFPDAQIYRVPTK-SNDIPGAFDAGNSMLVQHPqv 219
                   777799999*********************975565655556666667788************999999986445.799999**********99554 PP

                   .ECEEEESSCCHHHCHHHHHHHTTT.TSTEE...EEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHH CS
  Peripla_BP_4 184 .ldgilaandgmaegalealeaagl.agkvv...vtgqDatpealeaikdGtidatvaqdpyelgyaavelava 252
                       i+++nd++++g ++a+e +g+ a++v+   + g+Da +e  +a   G ++++ + +p   gy + e++++
    CTQ28833.1 220 kHWLIVGMNDNTVLGGVRATEGQGFkAPDVIgigINGVDAVNELSKAQPTG-FYGSLLPSPDIHGYKTSEMLYN 292
                   4446788******************87888855555555555555554444.4789999999999999999887 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.26   1.6e+03      72     113 ..      80     115 ..      46     150 .. 0.71
   2 !   17.0   0.0   9.3e-07    0.0056      19     115 ..     164     260 ..     145     316 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.26
                   CC-SEEEEESSCCHHHHHHHHHCCTT--TTTTEEEEBSS--S CS
  Peripla_BP_3  72 aalPtAviaasDelAlgvlqalreaglrvPedlsvigfddse 113
                   +a  +++++++    lg   +++++g+    d +vi +dd+ 
    CTQ28833.1  80 GA--KGFVICTPDPKLGSAIVAKARGY----DMKVITVDDQF 115
                   33..67777777777777777777777....88888888754 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 9.3e-07
                   TTSS-HHHHHHHHHHHHHHTTSSS-.EEEEE-S-SS-SSHHHHH.......HHHHHCC-SE....EEEESSCCHHHHHHHHHCCTT--TTTTEEEEB CS
  Peripla_BP_3  19 gdrgasasderergfrqaleelglp.lnetvvaaddpaaaaaaraal.ll.qalklaalPt....AviaasDelAlgvlqalreaglrvPedlsvig 108
                   +++++ ++++r+ g  +al+++g+p  ++++v ++  ++ +a +a   +l q      +P+     ++  +D++ lg ++a + +g++ P+ + + g
    CTQ28833.1 164 TADELDTARRRTTGSIDALKAAGFPdAQIYRVPTKSNDIPGAFDAGNsMLvQ------HPQvkhwLIVGMNDNTVLGGVRATEGQGFKAPDVIGI-G 253
                   35678999*****************899999999999999999998753332......34334448899*********************97753.4 PP

                   SS--SCC CS
  Peripla_BP_3 109 fddsela 115
                   +++ ++ 
    CTQ28833.1 254 INGVDAV 260
                   4433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2553.77
//
Query:       CTQ28834.1  [L=169]
Description: putative ferritin-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-18   66.8   0.1    2.1e-18   66.6   0.1    1.1  1  Ferritin  Ferritin-like domain


Domain annotation for each model (and alignments):
>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.1   1.2e-22   2.1e-18       2     140 ..       8     142 ..       7     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 1.2e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS....SHHHHHHC-SSSSCSSHHHHHHHHHHHHHHHHHHHH CS
    Ferritin   2 kaLneqladeltaayqylamawyvkgpgleglaeffdeqaeeerehadklaerilalGgtpvltraeleeieapkefgsveevleaalehekkvteslr 100
                 ++Ln q++ e++a++ yl+++ ++    ++g a f+++ a+   +  +++++++++ G  p++++ +  +    +e++s+e+ + + l ++++ ++ l 
  CTQ28834.1   8 QKLNTQMNLEFHASNVYLNLSEWCARHRFDGAATFLRTRAQSSITLTMRVFDYLKKAGSWPIVNPDHACN----PECTSLEDLFTQTLSDYQQRSRLLS 102
                 68*********************************************************88888877777....4688********************* PP

                 HHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin 101 elielaeeegDpatadfledfleeqeeheweleallekle 140
                  l++ a++++D+ t  fl+ + eeq++    l+++le+++
  CTQ28834.1 103 GLAQEAKAQSDDSTWRFLTLLAEEQQQDGLLLQSVLEEIR 142
                 ************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1330.87
//
Query:       CTQ28835.1  [L=520]
Description: putative oligogalacturonide transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-55  186.8  34.3    5.6e-55  186.6  34.3    1.0  1  MFS_2     MFS/sugar transport protein
    2.6e-10   39.7  36.7    2.6e-10   39.7  36.7    2.3  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
          9    6.8   9.2        8.3    6.9   0.0    4.1  4  DUF4059   Protein of unknown function (DUF4059)


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.6  34.3   9.4e-59   5.6e-55       2     427 .]      25     458 ..      24     458 .. 0.88

  Alignments for each domain:
  == domain 1  score: 186.6 bits;  conditional E-value: 9.4e-59
       MFS_2   2 yglgalaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlid...ktst..rwGrrrPwlllsaiilavsiillftppelsqsa 95 
                 yg g l    + ++ +++ll+Fyt   gl+ + +++++ va ++Dai++p++G+l+d   kt++  r Grrr +ll++ i+l++++ ll+       + 
  CTQ28835.1  25 YGGGNLLGSGALAISGAWLLYFYTTFCGLTLIEASFIFSVASIIDAISNPLMGYLTDnfgKTRLgkRFGRRRFFLLIG-IPLMMFYPLLWVE-----GL 117
                 5666666666778999*****************************************555466666889999555555.5555577777766.....67 PP

       MFS_2  96 kfiwllvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtk 194
                 +f ++l ty+++ i yt + +py +l++++t+d + R++lt+++ ++  l+ +laa+++++++l +g   ++++ +++++l++ ++ ++++  ++l+  
  CTQ28835.1 118 SFWYYLSTYVVFEIIYTSIMVPYETLATEMTDDFSLRSKLTGYKAIFGKLANFLAAFIPGQFILLYGK--DSATPFFLTGLTYGAILIVAISCLWLCSW 214
                 9*************************************************************999997..99999999999998888777777666666 PP

       MFS_2 195 ervem....rkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakr..l 286
                 er+      ++++k    + lsl ++++++f  r f++ l ++l+ + a  + ++++ Y++ +vl  + ++++ +  +  i++l++++l+  l+ +  +
  CTQ28835.1 215 ERERGeeveTSAKKGLLSTLLSLAKDMRSTFYLRVFRKHLGMYLCGFGAEWLFASIFTYFVIFVLQhDPAMVAGLNSLNSILQLISTALFIGLCVKkgF 313
                 665442255666666667788999******************************************9999999999999********999998766226 PP

       MFS_2 287 gkkntyllgalltivllvlvlll....qpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllL 381
                 +k  + +lg+++ +vll   l++    +   ++l++ ++v++g+g+g+ +++pw  ++ ++D++e  tG+rreg+++++ +f  k+   i ++ +g++L
  CTQ28835.1 314 SKPYILALGIVIFAVLLYTSLWFfhlpSGLATVLMFGITVLFGLGTGGVYYIPWTVYTFLADVDEIYTGRRREGIYAGAMTFSGKILRSIVVFSMGAIL 412
                 688888888888877777777777*9999999******************************************************************* PP

       MFS_2 382 safgyrakasvqspqvvlalrllyavlpavlllvallllvryplnd 427
                 s++g+++ka +q++++v+a++++++v  ++l+l+a+++  + +l++
  CTQ28835.1 413 SFYGFQSKAHSQPESAVTAIAVVFCVGVIALALAAIVFSKQMKLDR 458
                 ***********************************99999999885 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7  36.7   4.4e-14   2.6e-10      18     347 ..      42     399 ..      26     405 .. 0.63
   2 ?    0.6   2.5     0.034   2.1e+02     220     265 ..     402     447 ..     383     464 .. 0.48

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 4.4e-14
       MFS_1  18 alplalaedlgispseigllltlyalgaavaslplGrlsd.........rfGrrr.vlllglllfalglllllfa..sslwlllvlrvlqGlgagalfp 104
                 +l  ++++  g++  e+++++++ ++  a++++++G+l+d         rfGrrr +ll+g+ l+ +   ll+ +   s+w+ l   v+  + + +++ 
  CTQ28835.1  42 WLLYFYTTFCGLTLIEASFIFSVASIIDAISNPLMGYLTDnfgktrlgkRFGRRRfFLLIGIPLMMFY-PLLW-VegLSFWYYLSTYVVFEIIYTSIMV 138
                 333355555679999*************************99999999889****7777777777777.5555.5468899888888889999999999 PP

       MFS_1 105 agaaliadwfpk.eergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee.kgtgpap 195
                    +l+++++ + + r++ +g+ +++  l+  l++ + g ++ ++g      + ++ +  ++++++a+ + +l  +e+++ ++ +++++++  +t  + 
  CTQ28835.1 139 PYETLATEMTDDfSLRSKLTGYKAIFGKLANFLAAFIPGQFILLYGkdsatpFFLTGLTYGAILIVAISCLWLCSWERERGEEVETSAKKGlLSTLLSL 237
                 99*************************************999999988766655555555555555555655566888888888888888432222222 PP

       MFS_1 196 lvpawkallkdpvlw....illialllfffgfsglltllplylqevlglsglllaglllallalvgail.allagrlsdr.lgrrrrlllallllllaa 288
                 +++  ++ +  +v+     ++l+++   +  f++++t++ ++   vl  +   ++++l +l +++ +i+ al++g  +++ +++  + +lal+++++a+
  CTQ28835.1 238 AKD-MRSTFYLRVFRkhlgMYLCGFGAEW-LFASIFTYFVIF---VLQHD-PAMVAGLNSLNSILQLIStALFIGLCVKKgFSK--PYILALGIVIFAV 328
                 222.2222222333222223444444444.555555555554...55555.345555566666666666566888888885333..4444444444443 PP

       MFS_1 289 lglallavt.....ssavllll..vlvliGfglgfvfpsllalasdla.......ppeeagtasglfntagsl 347
                 l++  l ++       +vl  +  + vl+G+g g v+ + +++ + la       ++++ g ++g++++ g +
  CTQ28835.1 329 LLYTSLWFFhlpsgLATVL--MfgITVLFGLGTGGVYYIPWTVYTFLAdvdeiytGRRREGIYAGAMTFSGKI 399
                 3333333332223222222..2346666999666663333333333332333445667777777777776655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.034
       MFS_1 220 ffgfsglltllplylqevlglsglllaglllallalvgailallag 265
                 +++++++ + l +y  +    s   +a++++a++++vg+i+  la+
  CTQ28835.1 402 SIVVFSMGAILSFYGFQSKAHSQPESAVTAIAVVFCVGVIALALAA 447
                 3333334444444422222222124444444444444444432322 PP

>> DUF4059  Protein of unknown function (DUF4059)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0014       8.3       8      32 ..     191     216 ..     187     236 .. 0.76
   2 ?    1.8   0.9     0.054   3.2e+02       9      29 ..     317     337 ..     292     340 .. 0.92
   3 ?   -0.3   0.5      0.24   1.4e+03      12      37 ..     397     422 ..     392     451 .. 0.64
   4 ?   -0.9   0.1      0.37   2.2e+03      14      38 ..     429     453 ..     424     464 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0014
     DUF4059   8 lYlqgLllsillvllvsliwil.lra 32 
                 ++l gL   ++l++ +s++w+  +  
  CTQ28835.1 191 FFLTGLTYGAILIVAISCLWLCsWER 216
                 89******************862444 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.054
     DUF4059   9 YlqgLllsillvllvsliwil 29 
                 Y+ +L + i++vll + +w++
  CTQ28835.1 317 YILALGIVIFAVLLYTSLWFF 337
                 9999************99997 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.24
     DUF4059  12 gLllsillvllvsliwillralrkkd 37 
                 g +l +++v+ +++i  ++  ++k +
  CTQ28835.1 397 GKILRSIVVFSMGAILSFYGFQSKAH 422
                 56677777777777777776666655 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.37
     DUF4059  14 llsillvllvsliwillralrkkdK 38 
                 +++i +v+ v++i + l a+     
  CTQ28835.1 429 VTAIAVVFCVGVIALALAAIVFSKQ 453
                 5667777777777777766654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3602.21
//
Query:       CTQ28836.1  [L=83]
Description: hypothetical protein CH1034_240333 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-44  150.4   2.3    1.2e-44  150.2   2.3    1.0  1  DUF2766   Protein of unknown function (DUF2766)


Domain annotation for each model (and alignments):
>> DUF2766  Protein of unknown function (DUF2766)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   2.3   6.5e-49   1.2e-44       1      78 [.       1      78 [.       1      79 [. 0.99

  Alignments for each domain:
  == domain 1  score: 150.2 bits;  conditional E-value: 6.5e-49
     DUF2766  1 mskslneeqelvsdlvacqlvikqildvieviaPaevrekmsaqlksidfskhPaaadpvtkraiekaialielkfsk 78
                ms+ l+e++elvsd+vacqlvikqildvi+viaP+evrekm++qlk+idf+ hPa+adpvt ra++kaialielkf++
  CTQ28836.1  1 MSQHLTEHDELVSDVVACQLVIKQILDVIDVIAPVEVREKMTTQLKAIDFASHPASADPVTLRAVQKAIALIELKFTP 78
                9***************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 693.39
//
Query:       CTQ28837.1  [L=473]
Description: MFS family transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-44  151.5  43.2    2.9e-44  151.5  43.2    2.3  2  MFS_1     Major Facilitator Superfamily
    1.5e-06   26.9  22.7     0.0012   17.3   7.2    2.2  2  MFS_3     Transmembrane secretion effector
    2.2e-05   23.1   7.7    2.6e-05   22.9   6.7    1.5  2  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.5  43.2   4.8e-48   2.9e-44       2     352 ..      21     411 ..      20     412 .. 0.88
   2 ?    1.0   2.2     0.026   1.6e+02     137     166 ..     415     455 ..     407     472 .. 0.69

  Alignments for each domain:
  == domain 1  score: 151.5 bits;  conditional E-value: 4.8e-48
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 + a+f+ +l+ +++++alp  +a+d+g+++ e+++ +++y ++ av+++  G+++drfG+r ++ l+l++f l+++++ + s+   +++++r+lqG+g+
  CTQ28837.1  21 AGAFFMEFLDGTVIATALP-DMARDFGVTAVELNIGISAYLITLAVLIPASGWIADRFGARAIFTLALAIFTLASVFCGL-STEVhIFVAMRILQGVGG 117
                 5689***************.******************************************************666666.56555************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 ++++p+g  ++ + +pk +  +ai+ l+  + +++i+gp+lgg+++ +++W+++f+i+ +++l a++l   l   ++ ++   ++ +++          
  CTQ28837.1 118 ALMVPVGRLAALRTTPKHQLIKAIATLTWPALVAPIIGPPLGGFITRYASWHWIFFINVPLGLAAIIL--SLRIIPDIRETERRSFDLSgfittsvamv 214
                 *****************************************************************997..66666666666666666668899999999 PP

       MFS_1 189 .................................kgtgpaplvp.awkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllal 252
                                                   ++++++++p +    l  p  + + +++  lf + +s++ +llpl++q  +g++  + +gll+ +
  CTQ28837.1 215 slvtamerlgdrqpqiwptlalaalgfgcllysIRHFRRAAAPmVRLDALQVPT-FrVTMYGGSLFRASISAVPFLLPLLFQVGFGMD-PFHSGLLVLA 311
                 999999999999998888888887777777776334444444422222222222.24799999999999999****************.8****99999 PP

       MFS_1 253 lalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslgga 350
                 ++++++ +++ ++ l++ lg rr ll++++l ++++l++all +  ++v+++++++ +G  + ++ f+ + +la   +p+ ++  a+ lf+ta++l+  
  CTQ28837.1 312 VFVGNLTIKPATTPLIRWLGFRRLLLINGALNVCSLLACALLTPQ-TPVWAIMLILYLGGvFRSIQFTGVSTLAFADVPAAQMSDANTLFSTASQLAVG 409
                 99999999*************************************.999999966666666***********************************998 PP

       MFS_1 351 lg 352
                 lg
  CTQ28837.1 410 LG 411
                 87 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.026
       MFS_1 137 gpllggllasslg............Wravfyilaivsllafv 166
                 g ++g  l +++g            +r++f+++a+++l++++
  CTQ28837.1 415 G-AIGIRLGEQVGdwlhltelpgisFRLSFVFIALICLVGMI 455
                 4.44444445555555566666677**************987 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   7.2     2e-07    0.0012      64     194 ..      69     194 ..      47     224 .. 0.82
   2 !   15.5   7.5     7e-07    0.0042     219     356 ..     268     408 ..     249     471 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2e-07
       MFS_3  64 laGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvl 162
                  +G +aD f  R ++  + ++  l+sv+  +++      + + +a+ +l g+G al+ P  + +     +++++ +A+a  +    +a  +GP lgG +
  CTQ28837.1  69 ASGWIADRFGARAIFTLALAIFTLASVFCGLSTE-----VHIFVAMRILQGVGGALMVPVGRLAALRTTPKHQLIKAIATLTWPALVAPIIGPPLGGFI 162
                 4799********9999888888888888777765.....5567889999*************999999******************************* PP

       MFS_3 163 vaavGaalafavnalsylalivallrwkrevr 194
                    +   + f +n+   la i+  lr+ +++r
  CTQ28837.1 163 TRYASWHWIFFINVPLGLAAIILSLRIIPDIR 194
                 ************99777777666666555555 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 7e-07
       MFS_3 219 eikavlvRaalFglsasavlaLLPlvardqldgdalvyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslala...sslwvavlvl 314
                   ++++  + lF +s sav  LLPl+ +   + d+   G+l+ a+ vG ++    ++ L + l+  rl+l+  +     ll+ al    +++w ++l+l
  CTQ28837.1 268 TFRVTMYGGSLFRASISAVPFLLPLLFQVGFGMDPFHSGLLVLAVFVGNLTIKPATTPLIRWLGFRRLLLINGALNVCSLLACALLtpqTPVWAIMLIL 366
                 4577888999*****************************************9999999999******99988877776667666641115689999999 PP

       MFS_3 315 llgGaaWitalstlnvavqlavPrWvvgRalavYltvlaGgl 356
                  lgG    + ++++ + + + vP+   + a +++ t+++ ++
  CTQ28837.1 367 YLGGVFRSIQFTGVSTLAFADVPAAQMSDANTLFSTASQLAV 408
                 999987666666666555555554444444444433333222 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   6.7   4.3e-09   2.6e-05      46     212 ..      13     185 ..       5     196 .. 0.68
   2 ?   -2.6   0.0      0.23   1.4e+03     273     316 ..     203     245 ..     195     259 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.3e-09
       TRI12  46 faafslnvvatyfv..l..qasasalpnilqdvgqsens.slfstlwttgqavsilvmgrltdrfgrrp.fvilthilglvgaivgctatkfntllaam 138
                 f+a +l v+ ++f+  l     a+alp++ +d g +  + ++  + + +  av i   g ++drfg r  f ++  i+ l     g   +    ++ am
  CTQ28837.1  13 FSAPALLVAGAFFMefLdgTVIATALPDMARDFGVTAVElNIGISAYLITLAVLIPASGWIADRFGARAiFTLALAIFTLASVFCGL--STEVHIFVAM 109
                 555555565555542221134699*********9875431444455667789**************887366666777776555444..4444566677 PP

       TRI12 139 tllgvaagpagasplfvgelmsnktk....fl.gllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavll 212
                  +l    g  ga  + vg l + +t     ++  + +++ p++v   ++p lg  ++   sw wif+i + +   a++l
  CTQ28837.1 110 RILQ---GVGGALMVPVGRLAALRTTpkhqLIkAIATLTWPALVAPIIGPPLGGFITRYASWHWIFFINVPLGLAAIIL 185
                 6664...44566667788887766641111221455667799999999********************99776655554 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.23
       TRI12 273 viglissglgslvvfalyevygkpvrpivppalfkdtrgfvcil 316
                 + g+i++ +  + +++  e  g   +p + p+l   + gf c+l
  CTQ28837.1 203 LSGFITTSVAMVSLVTAMERLGD-RQPQIWPTLALAALGFGCLL 245
                 56777777777777777888885.68999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3344.86
//
Query:       CTQ28838.1  [L=212]
Description: Ribose-5-phosphate isomerase B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-30  104.7   0.0    4.9e-30  104.3   0.0    1.2  1  LacAB_rpiB  Ribose/Galactose Isomerase
      2e-22   78.1   0.1    3.4e-22   77.4   0.1    1.4  1  DUF3666     Ribose-5-phosphate isomerase


Domain annotation for each model (and alignments):
>> LacAB_rpiB  Ribose/Galactose Isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0   5.5e-34   4.9e-30       1     124 [.       3     144 ..       3     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 5.5e-34
                 EEEEE-GCGHHHHHHHHHHH....HHTTTEEEEECESS..SS---HHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHH CS
  LacAB_rpiB   1 iaigsDhagfelkekikeyL....kekghevidvgtes..eesvdYpdfakkvaeavasgeadlgiliCgtGiGmsiaaNkvkgiraalchdeesAkla 93 
                 ia+++++++++++ +i+++L    +ekg+ v++vg+++  +++++Y++++++++ +++s+++d+++++CgtG+G+ +++N ++g+++++c d+ +A l+
  CTQ28838.1   3 IALMMENSQANKNAIILKELnavaDEKGFPVYNVGMSDenDHHLTYIHLGIMASILLNSKAVDFVVTGCGTGQGALMSLNIHPGVVCGYCIDPADAFLF 101
                 89******************7665447********8887777********************************************************* PP

                 HHTT--SEEEE........ETTTS-HHHHHHHHHHHHH.......S CS
  LacAB_rpiB  94 rehnnanvlal........GarvigeelakeivkaFle.......t 124
                  ++nn+n+l+l        Ga++   ++   + kaF          
  CTQ28838.1 102 AQINNGNALSLpfakgfgwGAEL---NVRFIFEKAFTGrngegypP 144
                 ***********999999888888...99999999998855555542 PP

>> DUF3666  Ribose-5-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.1   3.8e-26   3.4e-22       2      47 .]     164     210 ..     163     210 .. 0.95

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 3.8e-26
                 HB-.-HHHHHHHS-HHHHHHHT-STTHHHHHTTT---HHHHHHHHTT CS
     DUF3666   2 tyk.dlleiLkaiDqdLvkgAisGerFqeyFFancqdeeIaayvkel 47 
                 ++k ++l++L+aiD+ Lvk+A+sG+rFq++FF+ncqd++I+++v+++
  CTQ28838.1 164 VVKeNYLDTLRAIDPQLVKTAVSGPRFQQCFFENCQDKAIEDFVRQI 210
                 6677****************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1603.11
//
Query:       CTQ28839.1  [L=111]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.03   14.3   0.2      0.046   13.7   0.2    1.3  1  NPM1-C    Nucleophosmin C-terminal domain


Domain annotation for each model (and alignments):
>> NPM1-C  Nucleophosmin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   2.6e-06     0.046      20      34 ..      19      33 ..      15      35 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.6e-06
      NPM1-C 20 veaKFinyvkncFkm 34
                +e K+ n++k+cFk+
  CTQ28839.1 19 LENKLSNFMKSCFKI 33
                699**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 840.91
//
Query:       CTQ28840.1  [L=165]
Description: ferritin iron storage protein (cytoplasmic) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-35  121.6   5.0    2.7e-35  121.4   5.0    1.0  1  Ferritin  Ferritin-like domain


Domain annotation for each model (and alignments):
>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   5.0   1.5e-39   2.7e-35       1     140 [.       7     142 ..       7     144 .. 0.97

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 1.5e-39
                 HHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS....SHHHHHHC-SSSS.CSSHHHHHHHHHHHHHHHHHH CS
    Ferritin   1 ikaLneqladeltaayqylamawyvkgpgleglaeffdeqaeeerehadklaerilalGgtpvltraeleeieapke.fgsveevleaalehekkvtes 98 
                 i++Lneq++ el+++++y +m+++++   +eg a+f++ +a+ee++h+++l++++ + G        ++ +i++p   ++s++e +++ +ehe+ +t++
  CTQ28840.1   7 IDKLNEQMNLELYSSLLYQQMSAWCSYHSFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGS-----LPRINAIASPFAeYASLDELFRQTYEHEQLITQK 100
                 689*********************************************************.....889999888888899******************* PP

                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin  99 lrelielaeeegDpatadfledfleeqeeheweleallekle 140
                 ++el+  a + +D+ t +fl+++++eq+e+e+ ++++++kl 
  CTQ28840.1 101 INELAHAAMTSQDYPTFNFLQWYVAEQHEEEKLFKSVIDKLT 142
                 ***************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       882  (0.049194); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1252.32
//
Query:       CTQ28841.1  [L=79]
Description: hypothetical protein CH1034_240338 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-35  119.8   0.1    4.9e-35  119.7   0.1    1.0  1  DUF2492   Protein of unknown function (DUF2492)


Domain annotation for each model (and alignments):
>> DUF2492  Protein of unknown function (DUF2492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.1   2.7e-39   4.9e-35       2      77 .]       3      78 ..       2      78 .. 0.99

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 2.7e-39
     DUF2492  2 siHgHevLelllasgesytkasLkeaieekFGeearFhtCsaedltadeLiefLlkkgKfvesedgftvnaekiCn 77
                siHgHevL+++lasges+t asL++ai+++FGeearFhtCsae+l+a++L++fL+kkgKf+++e+gft++++kiC+
  CTQ28841.1  3 SIHGHEVLQMMLASGESWTVASLEAAIRRRFGEEARFHTCSAENLSAAQLVAFLEKKGKFIAREEGFTTAENKICR 78
                8**************************************************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 627.88
//
Query:       CTQ28842.1  [L=403]
Description: tyrosine transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.1e-134  447.9  27.5   3.6e-134  447.7  27.5    1.0  1  Trp_Tyr_perm  Tryptophan/tyrosine permease family
    4.6e-09   35.5  17.1    4.6e-09   35.5  17.1    2.1  2  Aa_trans      Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Trp_Tyr_perm  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  447.7  27.5    4e-138  3.6e-134       2     393 ..       2     390 ..       1     391 [. 0.99

  Alignments for each domain:
  == domain 1  score: 447.7 bits;  conditional E-value: 4e-138
  Trp_Tyr_perm   2 tksllggvlliagtviGaGmlalPvatagagfipsllllilswvlmlasgllllEvllaakeeasfttlakkllGkkgniivalvllfllyiLlvAy 98 
                   ++  lg++l++agt+iGaGmla+P+a+ag+gf ++l ll+ +w+lm++++llllEv+++++++ ++ +la ++lG++g++++++ +lflly+L++Ay
    CTQ28842.1   2 KNRTLGSILIVAGTTIGAGMLAMPLAAAGVGFTVTLGLLFTLWALMCYTALLLLEVYQHVPADMGLGSLAARYLGRYGQWVTGFCMLFLLYALTAAY 98 
                   7889********************************************************************************************* PP

  Trp_Tyr_perm  99 isggGsilselleeasgialsarlavliftlvlgalvvlstkavdrinrvllflklvafvlllalllskvksdvLlsaksdtskvslvlsalPvlll 195
                   isg+G++l++ l+++ + +l++ + vliftl+ ga+v+++t++vd +nr+l+ +k+v++v++lall++++++ +Ll+    ++++ l+lsa+Pv+++
    CTQ28842.1  99 ISGAGELLASSLNQWLDWQLPPAAGVLIFTLLGGAVVCIGTALVDLFNRFLFSAKIVFLVIMLALLMPHIHQVNLLT-L--PVEQGLALSAIPVIFT 192
                   *****************************************************************************.4..89************** PP

  Trp_Tyr_perm 196 sfGFhgivpslvkyldknvkkvkkailiGtliaLvlyllWelivlGnlpreelariiakggnldtlveallelleskslelavelFsflAlatSflG 292
                   sfGFhg+vps+v+yl ++++k++++++iG+ i+Lv+y++W+l++lG+++ + +++++a+++ l++l+ea++e+++s+++elav+lF+ lAlatSflG
    CTQ28842.1 193 SFGFHGSVPSIVSYLRGDIRKLRRVFIIGSFIPLVAYIFWQLATLGSIDAPAFTALLANNAGLNGLLEAIREVVASPHVELAVHLFADLALATSFLG 289
                   ************************************************************************************************* PP

  Trp_Tyr_perm 293 valglfdyladlfklsdskkgrlklglvtflpPlvlalffPegflkalgyAGlaatilavilPallawkarkkkknapyrvlgGnkllllvlligiv 389
                   v+lglfdylad+f++++s  grl++g++tflpPl++alf+P+gf++algyAG+a ++la+i+Pall++k+r+++++a++rv+gG  +l lvll+gi 
    CTQ28842.1 290 VSLGLFDYLADMFQRKNSVGGRLQSGIITFLPPLAFALFYPRGFVMALGYAGVALAVLALIMPALLVMKSRREHPQATWRVAGGAPTLWLVLLCGIG 386
                   ***********************************************************************************************98 PP

  Trp_Tyr_perm 390 lilv 393
                   ++ +
    CTQ28842.1 387 IVAI 390
                   8765 PP

>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5  17.1   5.1e-13   4.6e-09       6     150 ..       6     174 ..       1     238 [. 0.72
   2 ?   -2.6   0.1      0.19   1.7e+03     356     383 ..     344     371 ..     333     395 .. 0.56

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 5.1e-13
    Aa_trans   6 lsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvsylil 104
                 l ++l ++ +++GaG+La+P A +  G  v l ll+  ++l +yt+llL++++++++        g l+ r+lG++g  ++++++l+ l   + +y+  
  CTQ28842.1   6 LGSILIVAGTTIGAGMLAMPLAAAGVGFTVTLGLLFTLWALMCYTALLLLEVYQHVP---ADMGLGSLAARYLGRYGQWVTGFCMLFLLYALTAAYISG 101
                 567889999*********************************************997...8888999******************************** PP

    Aa_trans 105 igdllpaifesffdt..........................lllsnvyfilisaliiipLs.lipnlskLsyl 150
                 +g+ll + + +++d                            l+++  f++ +++ +i+L+ l+p+++++  l
  CTQ28842.1 102 AGELLASSLNQWLDWqlppaagvliftllggavvcigtalvDLFNRFLFSAKIVFLVIMLAlLMPHIHQVNLL 174
                 *************976664444444444444444444444333444444444444444444444444444333 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.19
    Aa_trans 356 stplsfilPalfhlkliktekksleklv 383
                  + l++i Pal+ +k  +    ++ +++
  CTQ28842.1 344 LAVLALIMPALLVMKSRREHPQATWRVA 371
                 4567778888887777665544443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2781.25
//
Query:       CTQ28843.1  [L=222]
Description: conserved hypothetical protein; putative metal-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-31  107.7   5.6    9.1e-31  107.5   5.6    1.0  1  UPF0149   Uncharacterised protein family (UPF0149)
    2.6e-11   43.2   9.6    4.2e-11   42.6   9.6    1.4  1  SEC-C     SEC-C motif


Domain annotation for each model (and alignments):
>> UPF0149  Uncharacterised protein family (UPF0149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   5.6     1e-34   9.1e-31       1     172 [.      12     182 ..      12     184 .. 0.89

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 1e-34
                 HHHHHHHHHCT-SS-H...HHHHHHHHHHHHCT.HHHCCCHHHHCCCC..........STCHHHHHHHHHHHHHHHHHHCTTTTS------...S-HHH CS
     UPF0149   1 deLdelLasaelpesaldlaelhGfltgllcgpellppeeWlpallge...apafsdeeegeallallkrlyneiaaqLadedefefelll...edlad 93 
                 ++Ld+ La+++++   ld++el+G+lt++l++p+ ++p++Wl a++g+    p+++++ e++++++l  +++ +ia++L++ ++ +fe+l+   e   +
  CTQ28843.1  12 EWLDDTLAKYAAEGAILDVSELDGLLTAILSAPTDIEPAQWLLAIWGGadnVPRWANDRERDRFVNLTLQHMSDIAERLESYPD-QFEPLFgtrE---A 106
                 579*******9666666**********************************9*****************************888.6888884433...4 PP

                 HHHHHH...HHHHHHHHHHHHCTTT.GGG-SSHHHHHHHHHHHHHCT---TTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHH CS
     UPF0149  94 raepla...eWceGFlqGlglagddWlkdasseelaelLedlaalarleiaeeeeedeedeealeelieavpvavlllyeel 172
                   ++l+   eWc G+l+G++l+  dW  +  ++el+  L+ +a ++ +e  + ++ d+ +++++   ie +  a+l+ly+++
  CTQ28843.1 107 EGQELTiveEWCFGYLRGVALS--DW--STLPAELQPELDAIALHGSEE--QFSALDNLTADEFIASIERITPAALALYQYW 182
                 444444777************8..7*..4477999999***99999999..8999**************************9 PP

>> SEC-C  SEC-C motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   9.6   4.6e-15   4.2e-11       1      18 [.     203     220 ..     203     221 .. 0.96

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 4.6e-15
       SEC-C   1 RNdpCPCGSGkKYKkCCg 18 
                 RNdpCPCGSGkKYK+CC 
  CTQ28843.1 203 RNDPCPCGSGKKYKQCCL 220
                 9****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1732.29
//
Query:       CTQ28844.1  [L=293]
Description: Dihydrodipicolinate synthetase family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-35  122.3   0.0    1.7e-35  122.1   0.0    1.0  1  DHDPS     Dihydrodipicolinate synthetase family


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.0   9.6e-40   1.7e-35       2     286 ..       2     289 ..       1     292 [. 0.94

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 9.6e-40
                 -SEEEEE----B-TTSSB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE---SSHHHHHHHHHCCCCCT-SEE CS
       DHDPS   2 fsgiitalvtpfdedgkldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakgripviagvGsnstseaiklakkaeeaGadgv 100
                 fsg+ ++++tp + ++k+d++a  ++   l ++gvd+l ++G+tG  a ls +++  +v++a+    g+ip++ gvG+ +t+e ++l + a+eaGad++
  CTQ28844.1   2 FSGLCAFPLTPLH-QQKFDEKAFIRILARLTDAGVDSLGILGSTGSYAYLSRKQRRRVVQVAKAH-AGSIPMMVGVGAIATNEVLRLVEDAQEAGADAL 98 
                 899********97.579******************************************998766.589****************************** PP

                 EEE---SS---HHHHHHHHHHHHHCHSS-EEEEE-HHHHSHHHHHHHHHHHHTSTTEEEEE....E-SS-CTHHHHHHCCCSTTSEEEES-GGGHHHHH CS
       DHDPS 101 lavtPYYnkpsqeglyqhfkaiieatdlpvilYnvpsrtgadlspetvkrLaelenivgvK....eavgdleevikikkevgkdlviysGddelllsal 195
                 l+    Y + s e++  +++++  + + pv lY+ p  t + l+ e  +r+a+l+ i+++K     a +  e+v  ++++  +++++    d+ + + l
  CTQ28844.1  99 LLPMMSYQPLSAEEIFAFYEEVCRHVSVPVCLYDNPRTTHVMLADELQGRIAALPAIASIKipglPAPQASERVAALRQHLPSRVTLGVSGDAWATAGL 197
                 **999*******************************999999999999*************444335566689999999999999998889******** PP

                 HTT-SEEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCCCC.SCCHHHHHHHHCTTSSSBB.--TTS--S-HHHHHHHHHHH CS
       DHDPS 196 slGadGvisvtsniagermrqlikalkeGdlaeaaelnekllplikilfae.pnvilvktalellGlvveatlrkPltpleeeekeeleall 286
                 ++G +   sv   + ++ + +l++a++ Gd+a+ a+lne+l pl        +  + +  a+++lGl   + l +Pl++l ee+  e++++l
  CTQ28844.1 198 QAGCEAWYSVCGGLFPRCSLALVRAIRSGDVAQTAALNEQLAPLWRCFDRYgGSLRVIASAAAMLGLCDPDSLPRPLLSLGEEACREVASAL 289
                 *********************************************98887789999*****************************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2210.51
//
Query:       CTQ28845.1  [L=182]
Description: phosphatidylglycerophosphate synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-17   62.9   1.5    3.7e-17   62.9   1.5    2.7  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
  ------ inclusion threshold ------
        1.1    9.7  13.7         67    4.0  12.7    2.7  1  DUF202           Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   1.5   4.1e-21   3.7e-17       1      66 []       4      71 ..       4      71 .. 0.81
   2 ?    1.8   1.4     0.046   4.1e+02      17      27 ..      78     157 ..      73     181 .. 0.48

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 4.1e-21
                     S-HHHHHHHHHHHHHHHHHGGGS-H......HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf  1 nlPnaiTllrlllsvlailllltyyp....lvlailllliasltDalDGklARrlnqvstlGkllDslaD 66
                     n+P ++Tl+r++l+ + +l  ++y p     ++++l++++a++tD++DG+lARr+nq++++G++lD++aD
       CTQ28845.1  4 NIPTLLTLFRVILIPFFVL--AFYLPfswaPFACALIFFVAAVTDWFDGFLARRWNQSTRFGAFLDPVAD 71
                     69**********9665554..44555677756666666789999*************777*********9 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.046
                      HHHGGGS-H....................................................................... CS
  CDP-OH_P_transf  17 ailllltyyp.....................................................................l 27 
                      a++l++  y+                                                                     +
       CTQ28845.1  78 AMVLVAEHYHtwwvtlpaatmiareiiisalrewmaelgkrssvavswigkvkttaqmtalvwmlwrpypwvewagialF 157
                      44444444445555555555555555555555555555555555555555555555554544444555555532222221 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  12.7    0.0075        67      12      67 ..      29     176 ..      27     177 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0075
      DUF202  12 aWlRtslalialglallrffl.............................................................................. 32 
                 +W  +++ali++ +a++ +f                                                                               
  CTQ28845.1  29 SWAPFACALIFFVAAVTDWFDgflarrwnqstrfgafldpvadkvmvaiamvlvaehyhtwwvtlpaatmiareiiisalrewmaelgkrssvavswig 127
                 788888999999999998888888888888999999999999999999999998888888888888888888888888888888887776666666655 PP

      DUF202  33 ..............tgepsa....lgkilglilivlgiltllvglvrylrrqr 67 
                                    +    +  ++g++l+++++++ l+++ +yl  +r
  CTQ28845.1 128 kvkttaqmtalvwmL----WrpypWVEWAGIALFLVAAVLTLWSMLQYLNAAR 176
                 555544443333332....033336899********************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1505.93
//
Query:       CTQ28846.1  [L=610]
Description: excinuclease UvrABC, endonuclease subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-45  154.6   0.0    4.2e-45  153.4   0.0    1.6  1  UvrC_HhH_N  UvrC Helix-hairpin-helix N-terminal
    8.5e-11   42.0   0.1    1.7e-10   41.0   0.1    1.5  1  GIY-YIG     GIY-YIG catalytic domain
    3.5e-10   39.3   2.7    7.1e-10   38.3   2.7    1.5  1  UVR         UvrB/uvrC motif
      3e-09   36.3   0.1    0.00022   20.9   0.0    2.8  2  HHH         Helix-hairpin-helix motif
    2.4e-08   34.4   0.0    6.6e-08   33.1   0.0    1.7  1  HHH_5       Helix-hairpin-helix domain
    8.3e-06   26.0   0.2      0.049   13.9   0.0    3.2  3  HHH_3       Helix-hairpin-helix motif
    5.7e-05   23.1   0.0    0.00012   22.1   0.0    1.5  1  HHH_2       Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> UvrC_HhH_N  UvrC Helix-hairpin-helix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.4   0.0   1.6e-48   4.2e-45       3     154 .]     386     542 ..     384     542 .. 0.92

  Alignments for each domain:
  == domain 1  score: 153.4 bits;  conditional E-value: 1.6e-48
                 HTT-SS---EEEEEEEEEETTTEEEEEEEEEETTEE-GGG-EEEEEE.-SS--HHHHHHHHHHHHHTTS.....---SEEEESSSHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  UvrC_HhH_N   3 llglkekpkriecyDiShiqgtntvgsmvvfedgkpkkseyRkfkiksvkegdDyaamrevlrRrfkrllkefsklPdLiliDGGkgqlnaakevleel 101
                 +l+l+ ++kr+ec+DiSh++g++tv+s+vvf+ ++p + eyR+++i++ + gdDyaam++vlrRr+ ++ + ++k Pd+iliDGGkgql++ak+v++el
  CTQ28846.1 386 VLELP-AVKRMECFDISHTMGEQTVASCVVFDSNGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAID-DNKIPDVILIDGGKGQLAQAKAVFAEL 482
                 57788.69************************************************************998.99************************* PP

                 T-.....---EEEEES.................SSSEEEE--TT-HHHHHHHHHHHHHHHHHH CS
                 xx.....xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  UvrC_HhH_N 102 gl.....kipvvglaKdkkrktraka.....eereeevlelkkssealkllqrirdeaHrfAI 154
                 ++     +  ++g+aK+++rk   ++     e    e ++l+++s+al+++q+irde+H  AI
  CTQ28846.1 483 DVpwdkhHPLLLGVAKGSDRKAGLETlffepE---GEGFSLPPDSPALHVIQHIRDESHDHAI 542
                 **9987444499*****999988887885333...344***********************98 PP

>> GIY-YIG  GIY-YIG catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.1   6.5e-14   1.7e-10       2      78 .]      18      93 ..      17      93 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 6.5e-14
                -EEEEEEETTT--EEEEEESSHHHHHHHHHHHHHHT--S-HS.STEEEEEEEE----HHHHHHHHHHHHHHTTSSSS CS
     GIY-YIG  2 ggvYiirskenkliYvGstknlekRlkqHnagkkakytrkkgkkpfeliileifptksealelEkklikkyksnkyn 78
                 gvY +++  + +iYvG++k+l+kRl+++++++ a  ++ + +   + i +++  t++eal lE  +ik y++ +yn
  CTQ28846.1 18 PGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVALIAQIDVTVTHTETEALLLEHNYIKLYQP-RYN 93
                69*******************************999999988888999999**********************.998 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   2.7   2.8e-13   7.1e-10       2      34 ..     205     237 ..     204     239 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 2.8e-13
         UVR   2 klikeLeeemeeAaenedFEkAAklRDqinalk 34 
                 +++ +L + me+A++n++FE+AA++RDqi a++
  CTQ28846.1 205 QVLTQLIARMEKASQNLEFEEAARIRDQIQAVR 237
                 799***************************987 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   3.9e-05       0.1       5      30 .]     550     575 ..     546     575 .. 0.84
   2 !   20.9   0.0   8.5e-08   0.00022       2      27 ..     579     604 ..     578     605 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.9e-05
                 HHTSSHHHHHTSTT-SHHHHHHHHHH CS
         HHH   5 lipasreeLlalPGVGpktAeaIlsy 30 
                  +  s   L++++GVGpk+ +  l y
  CTQ28846.1 550 AKVKSTSSLETIEGVGPKRRQMLLKY 575
                 56678999***********9999877 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 8.5e-08
                 HHHHHTSSHHHHHTSTT-SHHHHHHH CS
         HHH   2 leglipasreeLlalPGVGpktAeaI 27 
                 l+gl  as+ee++++PG+  + Ae+I
  CTQ28846.1 579 LQGLQQASVEEIAKVPGISHALAEKI 604
                 79**********************99 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   2.6e-11   6.6e-08       3      54 ..     557     607 ..     556     609 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2.6e-11
                 HHHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHH CS
       HHH_5   3 eLlsvsGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriile 54 
                 +L +++G+Gpk+   ll+  ++ ++ l +a+vee+ak+pGi+  +Ae+i  +
  CTQ28846.1 557 SLETIEGVGPKRRQMLLKY-MGGLQGLQQASVEEIAKVPGISHALAEKIFYS 607
                 5899***************.****************************9655 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.43   1.1e+03      43      59 ..     230     246 ..     226     249 .. 0.86
   2 !    7.3   0.0    0.0021       5.4      29      62 ..     541     574 ..     538     576 .. 0.87
   3 !   13.9   0.0   1.9e-05     0.049      10      31 ..     584     605 ..     582     607 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.43
       HHH_3  43 reeLlkvkglgpktfeq 59 
                 r++ + v+++++k+f  
  CTQ28846.1 230 RDQIQAVRRVTEKQFVS 246
                 8999**********965 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0021
       HHH_3  29 nIvayReknGpfksreeLlkvkglgpktfeqlag 62 
                 +I  +R+k+ ++ks   L  ++g+gpk  + l +
  CTQ28846.1 541 AISGHRKKRAKVKSTSSLETIEGVGPKRRQMLLK 574
                 67789**********************9877655 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 1.9e-05
       HHH_3  10 tAsaeeLqklpGlgpklAknIv 31 
                 +As+ee++k+pG++ +lA++I 
  CTQ28846.1 584 QASVEEIAKVPGISHALAEKIF 605
                 7*******************95 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.6e-08   0.00012       8      52 ..     561     605 ..     558     610 .] 0.94

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.6e-08
       HHH_2   8 IrhVGektAklLakrFksldaLkkasleeLlevddiGeeiAqsiv 52 
                 I  VG k  + L k  + l+ L++as+ee+++v++i    A++i 
  CTQ28846.1 561 IEGVGPKRRQMLLKYMGGLQGLQQASVEEIAKVPGISHALAEKIF 605
                 889***************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4733.63
//
Query:       CTQ28847.1  [L=235]
Description: DNA-binding response regulator in two-component regulatory system with BarA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-29  102.3   0.0    2.9e-29  101.5   0.0    1.4  1  Response_reg  Response regulator receiver domain
    6.2e-21   73.7   2.8      7e-21   73.5   0.2    2.3  3  GerE          Bacterial regulatory proteins, luxR family
    2.4e-06   27.1   0.3    4.8e-06   26.1   0.1    1.6  2  Sigma70_r4_2  Sigma-70, region 4
    0.00029   20.6   0.0     0.0022   17.7   0.0    2.1  2  HTH_23        Homeodomain-like domain
     0.0024   17.8   0.2     0.0082   16.1   0.0    2.0  2  HTH_29        Winged helix-turn helix
      0.005   16.4   0.1      0.013   15.1   0.1    1.7  1  HTH_24        Winged helix-turn-helix DNA-binding
     0.0089   16.1   0.1      0.024   14.7   0.1    1.7  1  HTH_7         Helix-turn-helix domain of resolvase
  ------ inclusion threshold ------
       0.01   15.8   0.1      0.026   14.5   0.1    1.7  1  HTH_Mga       M protein trans-acting positive regulator (MGA)
      0.019   15.1   0.1       0.27   11.4   0.0    2.4  2  HTH_28        Helix-turn-helix domain
      0.028   13.9   0.1       0.12   11.9   0.0    2.0  2  Sigma70_r4    Sigma-70, region 4
      0.031   14.3   0.0      0.048   13.7   0.0    1.3  1  DUF2089       Protein of unknown function (DUF2089)
      0.065   13.1   0.1       0.25   11.2   0.0    1.9  2  Terminase_5   Putative ATPase subunit of terminase (gpP-like)
      0.068   13.1   0.2       0.21   11.5   0.1    1.9  2  HTH_5         Bacterial regulatory protein, arsR family
      0.086   13.3   0.0       0.22   12.0   0.0    1.7  1  HTH_40        Helix-turn-helix domain
       0.13   12.3   0.2       0.32   11.0   0.0    1.8  1  HTH_11        HTH domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.0   2.4e-32   2.9e-29       1     112 []      21     133 ..      21     133 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 2.4e-32
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   vl+vdD++lvr+++r++le  +g+++ +ea  g++a++++++++ d++l+D+nmpg+ Gle++++i +    ++vi+lt h+e++   ++++aga +
    CTQ28847.1  21 VLLVDDHELVRAGIRRILEdIKGIKVAGEACCGEDAVKWCRANSADVVLMDMNMPGIGGLEATRKIARSVAGTKVIMLTVHTENPLPAKVMQAGAAG 117
                   89*****************77***7777****************************************99*************************** PP

                   EEESSG-HHHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkale 112
                   +lsK  +p+e+++a++
    CTQ28847.1 118 YLSKGAAPQEVVNAIR 133
                   ***********99985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.9   5.9e+03       9      21 ..     109     121 ..     108     126 .. 0.78
   2 ?   -0.6   0.1      0.83     1e+03      21      31 ..     144     154 ..     131     155 .. 0.71
   3 !   73.5   0.2   5.9e-24     7e-21       2      57 .]     166     221 ..     165     221 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.9
                 HHHHHHCTTS-HH CS
        GerE   9 evLrllaeGksnk 21 
                 +v++  a+G+ +k
  CTQ28847.1 109 KVMQAGAAGYLSK 121
                 6999999998877 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.83
                 HHHHHHHTS-H CS
        GerE  21 keIAeelniSe 31 
                  +IA+++ +S+
  CTQ28847.1 144 SDIAQQMALSQ 154
                 589**999985 PP

  == domain 3  score: 73.5 bits;  conditional E-value: 5.9e-24
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 sLs+RE++++ ++++G++++eI+e+ln+S+kTV++++ ++++KLn++ +vel++la
  CTQ28847.1 166 SLSERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLA 221
                 8****************************************************997 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.7   6.8e+03      31      39 ..     145     153 ..     144     154 .. 0.81
   2 !   26.1   0.1     4e-09   4.8e-06       9      50 ..     165     205 ..     164     209 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.7
                   HHHHHHT-- CS
  Sigma70_r4_2  31 EIAellgis 39 
                   +IA+++ +s
    CTQ28847.1 145 DIAQQMALS 153
                   799999877 PP

  == domain 2  score: 26.1 bits;  conditional E-value: 4e-09
                   TTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHH CS
  Sigma70_r4_2   9 aeLperqreifllryleglsykEIAellgisegtVksrlsRA 50 
                   a+L+er+ +i+l++  +g +  EI+e+l++s++tV+s+ +R 
    CTQ28847.1 165 ASLSERELQIMLMI-TKGQKVNEISEQLNLSPKTVNSYRYRM 205
                   79***********8.8**********************9995 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.82   9.8e+02       9      30 ..     130     153 ..     125     154 .. 0.76
   2 !   17.7   0.0   1.8e-06    0.0022       6      40 ..     170     204 ..     168     209 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.82
      HTH_23   9 rillllae..GlsvreIAreLgvs 30 
                  +++ +a   ++  ++IA+++  s
  CTQ28847.1 130 NAIRCVASgqRYIASDIAQQMALS 153
                 578888866689999999987665 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.8e-06
      HTH_23   6 eRlrillllaeGlsvreIAreLgvsrrTvyrwlkr 40 
                 + l+i+l+  +G+ v eI+++L+ s+ Tv  ++ r
  CTQ28847.1 170 RELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYR 204
                 5689*************************988765 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       9.7   1.2e+04      16      25 ..     144     153 ..     143     153 .. 0.84
   2 !   16.1   0.0   6.9e-06    0.0082       3      33 ..     173     202 ..     172     205 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9.7
      HTH_29  16 sqiAkllgls 25 
                 s+iA+++ ls
  CTQ28847.1 144 SDIAQQMALS 153
                 6899999987 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 6.9e-06
      HTH_29   3 qallllaeGvstvsqiAkllglsrrtvyrwl 33 
                 q+ l++ +G++ v +i ++l+ls++tv+ ++
  CTQ28847.1 173 QIMLMITKGQK-VNEISEQLNLSPKTVNSYR 202
                 899*******9.****************997 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.1e-05     0.013       6      37 ..     172     201 ..     167     202 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
      HTH_24   6 rkILelLqknprisqreLAerlglSpstvnrr 37 
                 ++I+  + k  +   +e++e+l+lSp tvn +
  CTQ28847.1 172 LQIMLMITK--GQKVNEISEQLNLSPKTVNSY 201
                 555555555..77789**************86 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1     2e-05     0.024      12      41 ..     172     203 ..     166     208 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2e-05
                 GGGGSSTTTT--STTTSSSS---SSSS..--S CS
       HTH_7  12 nrvvkLleeGisiskIAkevnisRsTv..YRy 41 
                  ++  ++ +G+++++I +++n+s+ Tv  YRy
  CTQ28847.1 172 LQIMLMITKGQKVNEISEQLNLSPKTVnsYRY 203
                 58899*********************977665 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   2.2e-05     0.026       5      40 ..     169     201 ..     166     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.2e-05
     HTH_Mga   5 krklkLlelLteneksltldelakeLglseltlqsd 40 
                 +r+l+++  +t+     ++ e++++L+ls +t++s+
  CTQ28847.1 169 ERELQIMLMITK---GQKVNEISEQLNLSPKTVNSY 201
                 689999999999...44688**************98 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.49   5.9e+02       5      25 ..     131     153 ..     129     154 .. 0.82
   2 ?   11.4   0.0   0.00023      0.27       3      29 ..     172     198 ..     172     204 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.49
      HTH_28   5 iikllaaGhsvre..aArelgis 25 
                 +i+++a+G ++ +  +A+++ +s
  CTQ28847.1 131 AIRCVASGQRYIAsdIAQQMALS 153
                 8999**99977777799999887 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00023
      HTH_28   3 leiikllaaGhsvreaArelgisrrtv 29 
                 l+i++ + +G  v+e++++l++s+ tv
  CTQ28847.1 172 LQIMLMITKGQKVNEISEQLNLSPKTV 198
                 57888888******************9 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.3   1.5e+03      24      34 ..     144     154 ..     132     155 .. 0.88
   2 ?   11.9   0.0   9.9e-05      0.12       3      43 ..     165     204 ..     164     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.3
                 HHHHHHHTS-H CS
  Sigma70_r4  24 eEIgerlgiSr 34 
                 ++I++++ +S+
  CTQ28847.1 144 SDIAQQMALSQ 154
                 689****9997 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 9.9e-05
                 HHS-HHHHHHHHHHH.TTT--HHHHHHHHTS-HHHHHHHHHH CS
  Sigma70_r4   3 asLpererevlelrf.geglTleEIgerlgiSrerVrqiekr 43 
                 asL+ere +++ +   g++    EI+e+l++S  +V +   r
  CTQ28847.1 165 ASLSERELQIMLMITkGQK--VNEISEQLNLSPKTVNSYRYR 204
                 79*********99987777..9*************9876555 PP

>> DUF2089  Protein of unknown function (DUF2089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     4e-05     0.048       1      80 [.     134     212 ..     134     224 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4e-05
     DUF2089   1 CPvcgeelvvtrlkcescettiegeFelsefarLskeqlefvelfikarGnlkevekelgisYpTvrnrldeileaLgye 80 
                 C   g++ + + ++ + + ++ie e + s+fa+Ls+ +l+ + l i +  +++e+ ++l++s  Tv +   ++ ++L+++
  CTQ28847.1 134 CVASGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIM-LMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIH 212
                 77788889999999999999*******************976.55777779***************99988888888766 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       2.2   2.6e+03      13      26 ..     140     153 ..     139     155 .. 0.77
   2 ?   11.2   0.0   0.00021      0.25      12      36 ..     180     204 ..     175     208 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.2
  Terminase_5  13 GyrvaeIAeelglk 26 
                   y   +IA+ + l+
   CTQ28847.1 140 RYIASDIAQQMALS 153
                  577789**999876 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00021
  Terminase_5  12 qGyrvaeIAeelglkeatVysWkkr 36 
                  +G  v eI+e l+l+++tV s+  r
   CTQ28847.1 180 KGQKVNEISEQLNLSPKTVNSYRYR 204
                  566899***************9766 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.8   3.4e+03      16      29 ..     141     154 ..     129     154 .. 0.73
   2 ?   11.5   0.1   0.00017      0.21       6      32 ..     173     198 ..     168     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.8
                 EEHHHHHHHHTS-H CS
       HTH_5  16 lcvcelaeelglsq 29 
                 + ++++a ++ lsq
  CTQ28847.1 141 YIASDIAQQMALSQ 154
                 55799999998887 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00017
                 HHHHHHTTSSEEHHHHHHHHTS-HHHH CS
       HTH_5   6 kILklLaegelcvcelaeelglsqstv 32 
                 +I+ +  +g ++v e++e+l+ls+ tv
  CTQ28847.1 173 QIMLMITKG-QKVNEISEQLNLSPKTV 198
                 555555555.78**************9 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00018      0.22       7      32 ..     176     201 ..     171     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
      HTH_40   7 elleeglsieeIAkerglkesTIegH 32 
                  ++ +g+++ eI+++ +l+++T+ ++
  CTQ28847.1 176 LMITKGQKVNEISEQLNLSPKTVNSY 201
                 5889*******************998 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00027      0.32       1      33 [.     170     199 ..     169     201 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00027
      HTH_11   1 RllqilelLleargpisgeeLAeeLnvSrrtvr 33 
                 R+lqi+ ++  ++g+   +e++e+Ln+S +tv 
  CTQ28847.1 170 RELQIMLMI--TKGQ-KVNEISEQLNLSPKTVN 199
                 556666666..5553.79*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1841.64
//
Query:       CTQ28848.1  [L=74]
Description: hypothetical protein CH1034_240345 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-40  134.9   3.4      8e-40  134.7   3.4    1.0  1  DUF2594          Protein of unknown function (DUF2594)
  ------ inclusion threshold ------
      0.013   15.1   0.1      0.014   15.0   0.1    1.1  1  ATP-grasp        ATP-grasp domain
      0.044   14.4   3.1       0.05   14.2   3.1    1.1  1  Anti-adapt_IraP  Sigma-S stabilisation anti-adaptor protein
       0.12   13.1   6.6       0.47   11.2   1.8    2.0  2  DUF5327          Family of unknown function (DUF5327)


Domain annotation for each model (and alignments):
>> DUF2594  Protein of unknown function (DUF2594)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.7   3.4   1.8e-43     8e-40       1      74 []       1      74 []       1      74 [] 0.99

  Alignments for each domain:
  == domain 1  score: 134.7 bits;  conditional E-value: 1.8e-43
     DUF2594  1 msnvdfstsedtetLaeEvaClKalltllLkalGqAdAGkviinmEkyiaeledeeqaevFkntikqiktaYRq 74
                ms++dfst+e++++La+Ev+ClKa++tl+L+a+GqAdAG+vii+mEk+i+++ede+qa+vF++t+kqik+aYRq
  CTQ28848.1  1 MSTPDFSTAENKQELAQEVSCLKAMITLMLQAMGQADAGRVIIKMEKQISQMEDEAQAAVFSSTVKQIKQAYRQ 74
                899**********************************************************************8 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   3.1e-06     0.014       7      62 ..       2      57 ..       1      69 [. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.1e-06
                -B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHCG CS
   ATP-grasp  7 pvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqalealk 62
                ++p+f ++e+k+el + ++ l++ + +  + +g    G  +++ e++++q+ ++++
  CTQ28848.1  2 STPDFSTAENKQELAQEVSCLKAMITLMLQAMGQADAGRVIIKMEKQISQMEDEAQ 57
                79************************************************998873 PP

>> Anti-adapt_IraP  Sigma-S stabilisation anti-adaptor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   3.1   1.1e-05      0.05      17      71 ..      10      65 ..       7      74 .] 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
  Anti-adapt_IraP 17 eeskeLtaqVealelllsallltlskekvqeliesvekainsales.sdevlksda 71
                     e+++eL   V  l  +++ +l+++++ +  ++i + ek i +++++ +++v++s +
       CTQ28848.1 10 ENKQELAQEVSCLKAMITLMLQAMGQADAGRVIIKMEKQISQMEDEaQAAVFSSTV 65
                     56789999**********************************99883445555555 PP

>> DUF5327  Family of unknown function (DUF5327)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2    0.0084        37      21      45 ..       8      32 ..       5      40 .. 0.85
   2 ?   11.2   1.8    0.0001      0.47       7      36 ..      40      69 ..      35      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0084
     DUF5327 21 kaeseakvrehiaaikalceLllee 45
                +ae++++++++++ +ka+  L+l+ 
  CTQ28848.1  8 TAENKQELAQEVSCLKAMITLMLQA 32
                5789******************984 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.0001
     DUF5327  7 tvlekmeeelekakkaeseakvrehiaaik 36
                +v+ kme+++++++++++ a +   ++ ik
  CTQ28848.1 40 RVIIKMEKQISQMEDEAQAAVFSSTVKQIK 69
                799***************999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1407  (0.0784762); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 575.49
//
Query:       CTQ28849.1  [L=240]
Description: DNA-binding transcriptional activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-30  103.7   0.0    9.1e-30  103.1   0.0    1.3  1  Autoind_bind  Autoinducer binding domain
    4.6e-22   77.3   0.2    7.9e-22   76.6   0.2    1.4  1  GerE          Bacterial regulatory proteins, luxR family
      0.003   17.6   0.4      0.097   12.7   0.0    2.3  2  HTH_20        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.054   13.3   0.0       0.12   12.2   0.0    1.6  1  HTH_23        Homeodomain-like domain
      0.074   12.7   0.0       0.14   11.8   0.0    1.5  1  Sigma70_r4_2  Sigma-70, region 4


Domain annotation for each model (and alignments):
>> Autoind_bind  Autoinducer binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   2.5e-33   9.1e-30       3     138 ..      24     154 ..      22     167 .. 0.87

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 2.5e-33
                   HHHHHHHHHHHHHTTCSEEEEEEEETTSCESCEEEEEESS-HHHHHHHHHTTGGGT-HHHHHHHHCSSEEEEECGGCCCCCSHHHHHHHHHHHHTT- CS
  Autoind_bind   3 eelfdlltrlaaalGfdrfaygarapskdsaedvlllsnyPaeWlerYveegylaiDPvvreaarssspfvWsddllaaelspaarrfldeardfGl 99 
                   ee+++ll+r ++al++d++++++r+p + ++++v++ s+yP +W+++Y++e+y+aiDPv+r      +++ W+d+l+++     a +++d ard+Gl
    CTQ28849.1  24 EEVYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTFQSTYPRAWMSHYQAENYFAIDPVLRPENFMRGHLPWNDSLFRD-----APALWDGARDHGL 115
                   899***************************************************************************5.....55*********** PP

                   SEEEEEEEEETTSSEEEEEEEESSSSCCHHHHHHHHHHH CS
  Autoind_bind 100 rsGltvpvhgprgrlaalslageerdldaaeaaeararl 138
                   ++G+t+++  p++  ++ls++++ r +     +e + rl
    CTQ28849.1 116 QKGVTQCLTLPNHAQGFLSVSANNRLPGGYPEDELELRL 154
                   ********************7666544444333344444 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.2   2.2e-25   7.9e-22       2      57 .]     179     234 ..     178     234 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 2.2e-25
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                  +s+RE+e+L+++aeGk++ e+A++l+iSe+TV++h++n+++K+n+ ++++++++a
  CTQ28849.1 179 KFSRRELEILKWTAEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYA 234
                 58****************************************************97 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2     0.041   1.5e+02       9      56 ..     113     165 ..     110     169 .. 0.80
   2 !   12.7   0.0   2.7e-05     0.097      13      48 ..     185     218 ..     181     221 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.041
                 -HHHHHHHHHH...STCTTB-HHHHHHHH..TS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20   9 hPvRrrilraL...araegltaselaerl..dlskntlsyHLrvLeeagLvev 56 
                 h  + ++ + L   + a+g+       rl  + +  +l  +Lr+L e  L+++
  CTQ28849.1 113 HGLQKGVTQCLtlpNHAQGFLSVSANNRLpgGYPEDELELRLRTLTELSLLTL 165
                 6667777777777777888888888888887899999**********999986 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.7e-05
                 HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHH CS
      HTH_20  13 rrilraLaraegltaselaerldlskntlsyHLrvL 48 
                 ++il++   aeg t +e+a  l++s nt+++H + +
  CTQ28849.1 185 LEILKWT--AEGKTSAEVAMILSISENTVNFHQKNM 218
                 4566666..***********************6665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.3e-05      0.12       5      34 ..     182     211 ..     178     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.3e-05
      HTH_23   5 reRlrillllaeGlsvreIAreLgvsrrTv 34 
                 r+ l+il+  aeG++ +e+A +L +s++Tv
  CTQ28849.1 182 RRELEILKWTAEGKTSAEVAMILSISENTV 211
                 67899************************9 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     4e-05      0.14      24      46 ..     192     214 ..     181     215 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4e-05
                   TS---HHHHHHHHT--HHHHHHH CS
  Sigma70_r4_2  24 leglsykEIAellgisegtVksr 46 
                    eg++ +E+A +l ise+tV+ +
    CTQ28849.1 192 AEGKTSAEVAMILSISENTVNFH 214
                   59******************866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1681.81
//
Query:       CTQ28850.1  [L=250]
Description: putative transporter subunit: ATP-binding component of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-36  123.9   0.0    9.2e-36  123.4   0.0    1.2  1  ABC_tran     ABC transporter
    2.6e-13   50.5   0.0    2.5e-06   27.5   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    1.8e-09   37.4   0.1    2.5e-08   33.6   0.1    2.0  1  SMC_N        RecF/RecN/SMC N terminal domain
    4.1e-07   30.4   0.1    3.7e-06   27.3   0.1    2.0  1  AAA_22       AAA domain
    1.3e-05   24.2   0.9       0.17   10.6   0.0    2.9  2  ABC_ATPase   Predicted ATPase of the ABC class
    3.8e-05   24.1   0.2    9.5e-05   22.8   0.2    1.7  1  AAA_16       AAA ATPase domain
    7.8e-05   22.3   0.0    0.00014   21.5   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
     0.0001   22.1   0.0      0.042   13.5   0.0    2.1  2  AAA_15       AAA ATPase domain
    0.00011   21.0   0.0      0.034   12.8   0.0    2.0  2  AAA_13       AAA domain
    0.00026   21.5   0.0    0.00051   20.6   0.0    1.4  1  AAA_23       AAA domain
    0.00036   20.7   0.0    0.00095   19.3   0.0    1.8  1  AAA_33       AAA domain
    0.00066   19.7   0.1      0.035   14.0   0.0    2.1  2  ATPase_2     ATPase domain predominantly from Archaea
     0.0012   18.4   0.2       0.12   12.0   0.0    2.4  2  AAA_25       AAA domain
     0.0013   18.5   0.2     0.0026   17.5   0.1    1.7  1  AAA_30       AAA domain
     0.0021   18.0   0.1     0.0038   17.1   0.1    1.5  1  RsgA_GTPase  RsgA GTPase
     0.0023   17.9   0.0     0.0052   16.7   0.0    1.6  1  NACHT        NACHT domain
     0.0038   16.7   0.0     0.0068   15.9   0.0    1.4  1  PhoH         PhoH-like protein
     0.0059   15.8   0.1      0.012   14.9   0.1    1.7  1  NB-ARC       NB-ARC domain
     0.0071   16.1   0.0      0.017   14.8   0.0    1.6  2  AAA_24       AAA domain
     0.0079   16.6   0.1        1.2    9.6   0.0    2.4  2  AAA          ATPase family associated with various cellular a
     0.0091   15.6   0.1      0.023   14.3   0.0    1.7  2  cobW         CobW/HypB/UreG, nucleotide-binding domain
  ------ inclusion threshold ------
      0.016   15.5   0.3      0.044   14.0   0.0    1.9  2  AAA_28       AAA domain
      0.024   14.0   0.0        7.3    6.0   0.0    2.3  2  TniB         Bacterial TniB protein
      0.034   13.3   0.0      0.042   13.0   0.0    1.4  1  G-alpha      G-protein alpha subunit
       0.05   12.7   3.8       0.11   11.6   0.1    2.6  3  T2SSE        Type II/IV secretion system protein
       0.05   13.3   0.1        0.5   10.1   0.0    2.1  2  IstB_IS21    IstB-like ATP binding protein
      0.053   14.1   0.2       0.12   12.9   0.1    1.7  1  AAA_18       AAA domain
      0.056   13.8   0.1       0.18   12.1   0.0    1.8  2  AAA_19       AAA domain
      0.058   12.8   0.2       0.32   10.4   0.0    2.1  2  RecA         recA bacterial DNA recombination protein
       0.06   13.2   0.0       0.13   12.2   0.0    1.5  1  MobB         Molybdopterin guanine dinucleotide synthesis pro
      0.066   13.4   0.1       0.96    9.7   0.1    2.3  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
      0.068   13.2   0.0       0.51   10.4   0.0    2.1  2  AAA_14       AAA domain
      0.075   12.5   0.0       0.16   11.5   0.0    1.5  1  AAA_7        P-loop containing dynein motor region
      0.077   12.9   0.0       0.14   12.0   0.0    1.4  1  Rad17        Rad17 P-loop domain
       0.08   12.4   0.0       0.37   10.2   0.0    1.8  2  Pox_A32      Poxvirus A32 protein
       0.11   12.4   0.2        1.7    8.5   0.1    2.2  2  NTPase_1     NTPase
       0.12   12.5   0.0       0.23   11.5   0.0    1.7  1  MMR_HSR1     50S ribosome-binding GTPase
       0.14   11.9   0.0       0.61    9.8   0.0    1.9  2  ATP_bind_1   Conserved hypothetical ATP binding protein
       0.15   11.8   0.0       0.33   10.7   0.0    1.6  1  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
       0.17   11.5   0.0       0.21   11.2   0.0    1.2  1  ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-bindi
       0.17   11.9   0.0       0.32   11.0   0.0    1.4  1  TsaE         Threonylcarbamoyl adenosine biosynthesis protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.0   2.1e-38   9.2e-36       1     137 []      19     173 ..      19     173 .. 0.92

  Alignments for each domain:
  == domain 1  score: 123.4 bits;  conditional E-value: 2.1e-38
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG........B-HHHCCHCEEEE-SS--S-TTSBHHHH............ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxx............ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke........qeleslrkeigvlpqepqlfpeltvren............ 79 
                 l+ ++l++++ge+vai+G++G+GK+tLl+ +  l++p++G+i++ +  ++           +++lr+++g+++q+ +lfp+ tv en            
  CTQ28850.1  19 LHGIDLEVQKGEVVAIIGPSGSGKTTLLRSINLLEQPESGTIRVGDVTIDAgrslgpqkGLIRQLRQHVGFVFQNFNLFPHRTVLENiiegpvivkged 117
                 6789**************************************77777777777777787789**********************************988 PP

                 ..HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ..esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                   es +++ ++l+k+gl++++++      + LSgGq+qrva+aral+ +p+++l+DEpt+
  CTQ28850.1 118 kqESMARARELLAKVGLSGKENSYP----RRLSGGQQQRVAIARALAMRPDVILFDEPTS 173
                 8777778999999999999777666....*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   4.8e-07   0.00021       2      41 ..      32      59 ..      31      97 .. 0.74
   2 !   27.5   0.0   5.8e-09   2.5e-06     235     298 ..     143     203 ..     113     207 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4.8e-07
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsgggg 41
                 ++iGp gsGK++LL+ + ll +            + +g+
  CTQ28850.1 32 VAIIGPSGSGKTTLLRSINLLEQ------------PESGT 59
                68******************943............33333 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 5.8e-09
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 r lS G+++  a++ al+ ++   +++l+DEp + L+P+l+ ++l  +++l++++   +++TH 
  CTQ28850.1 143 RRLSGGQQQRVAIARALAMRP---DVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203
                 668999999989999999999...9****************************9999******5 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   5.7e-11   2.5e-08      24     204 ..      29     208 ..       3     224 .. 0.69

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 5.7e-11
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEET...TSEEEEEETTEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkr...kgeseykingkevt 119
                  ++ ai+Gp GSGK+ ll +i  +L + ++ ++r  +++  i +  ++   +k+ +  + ++ +  ++ ++ ++   r+v +   +g   +k ++k+ +
  CTQ28850.1  29 GEVVAIIGPSGSGKTTLLRSI-NLLEQPESGTIRVGDVT--IDA-GRSLGPQKGLIRQLRQHVG--FVFQNFNLFPHRTVLEniiEGPVIVKGEDKQES 121
                 35889****************.78888888899988765..555.5555556665555422222..223333333333333300034445555677778 PP

                 HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                 xxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 120 kkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204
                  +  +ell+++g+s +       LSgG+++ va+a  +A++   p  + l+De  +aLD + v +v + +++  ++   +vi  +e  +++
  CTQ28850.1 122 MARARELLAKVGLSGKensyprRLSGGQQQRVAIARALAMR---PD-VILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFAR 208
                 89999999999999887888889************998864...54.679*********************99988766666544444433 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   8.5e-09   3.7e-06       5     127 ..      29     200 ..      25     207 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 8.5e-09
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee....................................erpevv......fvtlpsst..sskdllre 59 
                   +++++G+sG+GKTtllr +    + e+   +                                    ++++v+       v ++++   +s   +re
  CTQ28850.1  29 GEVVAIIGPSGSGKTTLLRSINLLEQPESGTIRvgdvtidagrslgpqkglirqlrqhvgfvfqnfnlfPHRTVLeniiegPVIVKGEDkqESMARARE 127
                 56789***************99998666555559********************************99766666688888845555555237777799* PP

      AAA_22  60 llralglelka.....erlsseellealeqalraravielliiDEaqh.lr.s..eealeeLrsllnlsrkgvqliL 127
                 ll ++gl++k+     +    ++ + a+++al  r  + +++ DE    l+ +   e+l+++r+l+   +k + +i+
  CTQ28850.1 128 LLAKVGLSGKEnsyprRLSGGQQQRVAIARALAMR--PDVILFDEPTSaLDpElvGEVLNTIRQLAQ--EKRTMVIV 200
                 ******99999764433333333334444555444..66*******999976377**********99..88777765 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.2   0.00064      0.28     241     265 ..      25      50 ..       7      52 .. 0.88
   2 !   10.6   0.0    0.0004      0.17     324     433 ..     146     238 ..     133     249 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00064
                 EE-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAle 265
                  ++kG v++I+G+   GK+TLL++++
  CTQ28850.1  25 EVQKGeVVAIIGPSGSGKTTLLRSIN 50 
                 578999*****************996 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0004
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE-HHH CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmeeykpkdvtek 422
                 SG   q ++i++al ++ +++L+DE tsA           elv +       +++ +r+l ++   ++++v+  ++   dvAd+ i m++ ++ +   +
  CTQ28850.1 146 SGGQQQRVAIARALAMRPDVILFDEPTSALD--------PELVGE-------VLNTIRQL-AQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG-E 227
                 999999**********************953........667733.......34445555.333446688888888888999999999998888876.6 PP

                 HHHHHHCHT-- CS
  ABC_ATPase 423 akeiaeelatk 433
                 ak++ ++ ++ 
  CTQ28850.1 228 AKALFASPQQP 238
                 77666665554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.2   2.2e-07   9.5e-05      24     127 ..      29     187 ..      17     219 .. 0.56

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.2e-07
      AAA_16  24 pelvllsGesGvGKsslvrellralekd..............................ggiflrgkcdqlesaipysa.laqalareellrqlldeaes 91 
                 +e+v ++G+sG+GK++l+r++   le+                               ++ f+ +++  +    p  + l ++++   ++ + +d++es
  CTQ28850.1  29 GEVVAIIGPSGSGKTTLLRSIN-LLEQPesgtirvgdvtidagrslgpqkglirqlrqHVGFVFQNFNLF----PHRTvLENIIEG-PVIVKGEDKQES 121
                 389******************9.78888555555555555555555555555555555455555555555....222213334433.444444444333 PP

      AAA_16  92 aeleawrekleeala.....................................avpelagaeasrllellkrll 127
                    +++re l++ ++                                     ++++l+++    l  ++ + +
  CTQ28850.1 122 --MARARE-LLAKVGlsgkensyprrlsggqqqrvaiaralamrpdvilfdePTSALDPE----LVGEVLNTI 187
                 ..222222.122222455666666666666665555555555555555555544455554....444444444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.2e-07   0.00014      14      46 ..      21      53 ..      13      61 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.2e-07
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTllDAiqalL 46
                g ++e++  +++ ++GpsGsGK+Tll +i+ l 
  CTQ28850.1 21 GIDLEVQKGEVVAIIGPSGSGKTTLLRSINLLE 53
                5566777555****************8887765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   9.7e-05     0.042      20      48 ..      25      54 ..      19      69 .. 0.82
   2 ?    6.7   0.0     0.012       5.1     287     364 ..     126     202 ..      85     207 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.7e-05
      AAA_15 20 dlsee.ltvliGkNnsGKSsilealdlFln 48
                ++++  +  +iG+ +sGK+++l+ ++l+ +
  CTQ28850.1 25 EVQKGeVVAIIGPSGSGKTTLLRSINLLEQ 54
                44444699*****************99876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.012
      AAA_15 287 k.........ddeelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 +          +e+++  + + G+q+ + ++  ++ a++        +++l++EP   L p++  ++ ++++ la++++   +i TH
  CTQ28850.1 126 RellakvglsGKENSYPRRLSGGQQQRVAIA--RALAMRP-------DVILFDEPTSALDPELVGEVLNTIRQLAQEKR-TMVIVTH 202
                 1555555555666666666677777766554..4445555.......89*****************************9.5666667 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0075       3.3      21      56 ..      34      68 ..      27     133 .. 0.61
   2 !   12.8   0.0   7.8e-05     0.034     526     580 ..     162     213 ..     151     232 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0075
      AAA_13 21 iYGwNGaGKTtLSrllrslelgetepkfangsieit 56
                i G  G+GKTtL r ++ le+ e       g + i 
  CTQ28850.1 34 IIGPSGSGKTTLLRSINLLEQPES-GTIRVGDVTID 68
                66899*************987553.23344444444 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 7.8e-05
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580
                    ++ +D P S LD + +  v + i++ +   ++ + + i TH ++f + v ++
  CTQ28850.1 162 RPDVILFDEPTSALDPELVGEVLNTIRQLA---QEKRTMVIVTHEMSFARDVADR 213
                 5679*************************9...99999************99865 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.2e-06   0.00051      15      41 ..      22      51 ..      10      53 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.2e-06
      AAA_23 15 idF...skgltlItGpNGaGKTTildAikl 41
                id+   +  +++I+Gp G+GKTT+l+ i l
  CTQ28850.1 22 IDLevqKGEVVAIIGPSGSGKTTLLRSINL 51
                67777666899***************9976 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.2e-06   0.00095       1     118 [.      31     213 ..      31     228 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.2e-06
      AAA_33   1 lvllvGlpGsGKstlaerl..lkklg..avllssdt.............................................................lr 34 
                 +v ++G++GsGK+tl++++  l++    ++++   t                                                             l 
  CTQ28850.1  31 VVAIIGPSGSGKTTLLRSInlLEQPEsgTIRVGDVTidagrslgpqkglirqlrqhvgfvfqnfnlfphrtvleniiegpvivkgedkqesmarareL- 128
                 7899*************854366655667776665577788888888888887777777777777777777777777777777777777766664421. PP

      AAA_33  35 rrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvil.dat..nlsrrerarflklarrlgvpvrivvvetdeetlkeRlakR 118
                  + +g   +  +++ r++    q++ ++a +al+ + +vil d +   l+++   ++l+  r+l  + r +v+ t e   ++ +a R
  CTQ28850.1 129 LAKVGLSGKENSYPRRLSGGQQQRV-AIA-RALAMRPDVILfDEPtsALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADR 213
                 2222233333334444444444444.444.455555555544555445566666777777777776666666666666666666665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   7.9e-05     0.035      16      40 ..      25      49 ..      21      62 .. 0.83
   2 ?    3.5   0.0      0.13        57     121     164 ..     165     201 ..     153     223 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.9e-05
    ATPase_2 16 erepneiyfiYGpegsGKtaLlkei 40
                e ++ e++ i Gp gsGKt+Ll+ i
  CTQ28850.1 25 EVQKGEVVAIIGPSGSGKTTLLRSI 49
                56778999**************975 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.13
    ATPase_2 121 iiiiDelqklidlglngaellvkeLlnliesltkekhlcvvicl 164
                 +i++De   +     +   +lv e ln i +l +ek+++v++ +
  CTQ28850.1 165 VILFDEPTSAL----D--PELVGEVLNTIRQLAQEKRTMVIV-T 201
                 78999998888....5..89***********88887776665.4 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00026      0.12      31      50 ..      27      46 ..      19      51 .. 0.89
   2 ?    4.0   0.1     0.074        32      75     187 ..     111     202 ..     107     208 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00026
      AAA_25 31 pagelallaGapgtGKttla 50
                 +ge+++++G++g+GKttl+
  CTQ28850.1 27 QKGEVVAIIGPSGSGKTTLL 46
                689***************98 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.074
      AAA_25  75 lyvsaEdsedelrrRlravgeal...............rddarllvldlagveslpLfakdrggtlltadvdaleaaieevegvrlvviDplsralggd 158
                 ++v +Ed++ e   R+r++++++                +++r+                            a+++a+    +++++ +D  ++al+  
  CTQ28850.1 111 VIVKGEDKQ-ESMARARELLAKVglsgkensyprrlsgGQQQRV----------------------------AIARALAM--RPDVILFDEPTSALDP- 177
                 567777777.7777777777777443333322222222222222............................34555444..2566666665555533. PP

      AAA_25 159 ensnsdvgalvealeriarrtgaavllvh 187
                     + vg++++ ++++a++++  v+++h
  CTQ28850.1 178 ----ELVGEVLNTIRQLAQEKRTMVIVTH 202
                 ....3456777777777766666666666 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1     6e-06    0.0026      17      63 ..      29      74 ..      22     193 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6e-06
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa 63
                g  v+++ Gp G+GKtt+l++++ + + + g++ +   t  a + L+
  CTQ28850.1 29 G-EVVAIIGPSGSGKTTLLRSINLLEQPESGTIRVGDVTIDAGRSLG 74
                4.599*****************9888888655555444444444444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   8.7e-06    0.0038      86     125 ..      15      55 ..       1      72 [. 0.66

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.7e-06
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinallpelel 125
                   ++ l+ +  ++++ ++++++G+SG GK+tL+ +++  ++ 
   CTQ28850.1  15 GQTVLHGIDLEVQKgEVVAIIGPSGSGKTTLLRSINLLEQP 55 
                  5555666666666659***************9877653333 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.2e-05    0.0052       2      21 ..      31      50 ..      30      57 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.2e-05
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +v++ G++GsGKTtLl+++ 
  CTQ28850.1 31 VVAIIGPSGSGKTTLLRSIN 50
                799**************995 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.6e-05    0.0068      16      73 ..      26      81 ..      12     113 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-05
                HHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS----- CS
        PhoH 16 lkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpaveageelGflpgdle 73
                ++k ++v +iGp+G+GKt l     +++l++ +   i +   +++ag++lG ++g ++
  CTQ28850.1 26 VQKGEVVAIIGPSGSGKTTL--LRSINLLEQPESGTIRVGDVTIDAGRSLGPQKGLIR 81
                45789*************76..788999********99999**********9999443 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   2.7e-05     0.012      21      41 ..      30      50 ..      22     242 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.7e-05
                EEEEEEESTTSSHHHHHHHHC CS
      NB-ARC 21 lvvalvGmgGvGKttlakqil 41
                 vva+ G  G+GKttl+++i+
  CTQ28850.1 30 EVVAIIGPSGSGKTTLLRSIN 50
                49****************997 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     4e-05     0.017       4      22 ..      31      49 ..      28      86 .. 0.81
   2 ?   -2.1   0.0       6.1   2.6e+03     114     191 ..     186     205 ..     173     215 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4e-05
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 ++i+Gpsg+GKTtl++++
  CTQ28850.1 31 VVAIIGPSGSGKTTLLRSI 49
                799*************998 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6.1
      AAA_24 114 llkklqelrknvifiahektrkdedpegeakytrlepklgkktanelkeevDlvlranlkredkvgervlktsksesi 191
                 ++++l                                                          ++ +r++   ++e++
  CTQ28850.1 186 TIRQL----------------------------------------------------------AQEKRTMVIVTHEMS 205
                 22222..........................................................233444444444444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0028       1.2       2      18 ..      33      49 ..      32      87 .. 0.91
   2 ?    5.0   0.0     0.072        31      45     106 ..     148     199 ..     119     222 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0028
                EEESSTTSSHHHHHHHH CS
         AAA  2 llyGppGtGKTllakav 18
                 ++Gp G GKT+l +++
  CTQ28850.1 33 AIIGPSGSGKTTLLRSI 49
                589**********9987 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.072
                 HHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEE CS
         AAA  45 kirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivi 106
                   ++ ++ a++ a +p ++++DE  +    +          +v + l+ + ++ ++++ ++vi
  CTQ28850.1 148 GQQQRVAIARALAmRPDVILFDEPTSALDPE----------LVGEVLNTIRQLAQEKR-TMVI 199
                 4555555666666679999999987776666..........66666666666666422.4444 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.2e-05     0.023       2      25 ..      31      54 ..      30      76 .. 0.76
   2 ?   -1.9   0.0         5   2.2e+03      17      33 ..     184     200 ..     151     219 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.2e-05
                EEEEEESTTCCHHHHHHHHHCT-- CS
        cobW  2 vtvltGflGsGKTtLlnhllenra 25
                v+ + G+ GsGKTtLl+++   ++
  CTQ28850.1 31 VVAIIGPSGSGKTTLLRSINLLEQ 54
                67899************9863333 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5
                 HHHHHCT--SS-EEEEE CS
        cobW  17 lnhllenraglklaviv 33 
                 ln++ + ++++++ viv
  CTQ28850.1 184 LNTIRQLAQEKRTMVIV 200
                 33333334444444433 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0    0.0001     0.044       2      20 ..      32      50 ..      31      87 .. 0.83
   2 ?   -1.2   0.0       4.8   2.1e+03      85      85 ..     177     177 ..     125     225 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 0.0001
      AAA_28  2 ivitGgestGKTtlleaLa 20
                ++i+G++++GKTtll+ ++
  CTQ28850.1 32 VAIIGPSGSGKTTLLRSIN 50
                89*************9875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 4.8
      AAA_28  85 t 85 
                 +
  CTQ28850.1 177 P 177
                 1 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.017       7.3      36      58 ..      30      52 ..      22      65 .. 0.81
   2 ?    5.9   0.0     0.018       7.8     106     158 ..     149     199 ..     108     212 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.017
        TniB 36 pnlllvGdsnnGKtmivekFarl 58
                + + ++G+s  GKt+++++   l
  CTQ28850.1 30 EVVAIIGPSGSGKTTLLRSINLL 52
                5689************9986655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.018
        TniB 106 kleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipiv 158
                 ++++ +++   ++++ v+++DE  ++l    +   e+ln++++L +e +  ++
  CTQ28850.1 149 QQQRVAIARALAMRPDVILFDEPTSAL--DPELVGEVLNTIRQLAQEKRTMVI 199
                 33334444444567779******9999..7888899********999776555 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.6e-05     0.042      26      50 ..      32      56 ..      22     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.6e-05
                EEEEESTTSSHHHHHHHHHHHCS-- CS
     G-alpha 26 llllGqseSGKsTilkqlkllykkg 50
                + ++G s+SGK+T+l+++ ll++++
  CTQ28850.1 32 VAIIGPSGSGKTTLLRSINLLEQPE 56
                6789*****************9986 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00024      0.11     116     149 ..      16      49 ..       3      66 .. 0.77
   2 ?    0.6   0.1      0.53   2.3e+02     189     205 ..     152     168 ..     106     172 .. 0.80
   3 ?    0.1   0.1      0.78   3.4e+02      31      77 ..     180     226 ..     164     242 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
       T2SSE 116 ekiaevlrkavrerglilvsGgTgsGKttllyal 149
                 +++ + +   v++  ++ + G+ gsGKttll ++
  CTQ28850.1  16 QTVLHGIDLEVQKGEVVAIIGPSGSGKTTLLRSI 49 
                 566677788899999999************9654 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.53
       T2SSE 189 adllraaLRlrPDrimv 205
                 + ++  aL +rPD+i+ 
  CTQ28850.1 152 RVAIARALAMRPDVILF 168
                 557788999******85 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.78
       T2SSE  31 vdgielreveelekaalerlisriaalakldiseerplqd.arlpekg 77 
                 v++ +l+++++l +++ +++i +  ++  +d++++ + +d +r+ e+g
  CTQ28850.1 180 VGE-VLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDqGRIVEQG 226
                 667.88999999999999999999999999999998877647777555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0011       0.5      44      66 ..      26      48 ..      16      54 .. 0.87
   2 ?    0.8   0.0      0.79   3.4e+02      98     152 ..     152     207 ..     119     214 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0011
   IstB_IS21 44 iekkenivllGpsGvGKshlaia 66
                ++k e ++++GpsG GK+ l  +
  CTQ28850.1 26 VQKGEVVAIIGPSGSGKTTLLRS 48
                688999************98655 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.79
   IstB_IS21  98 klaralkrllkvdllilDdlgllpldqaeaellfeviekr.yerrs.iiitsnlpfa 152
                 ++a a +  +++d+++ D+  +  ld +   ++++ i +   e+r+ +i+t +++fa
  CTQ28850.1 152 RVAIARALAMRPDVILFDEP-TSALDPELVGEVLNTIRQLaQEKRTmVIVTHEMSFA 207
                 44444444566777777775.456677666666666655414444414556666665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00027      0.12       1      19 [.      32      50 ..      32     115 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00027
      AAA_18  1 IlltGtpGvGKttlakeLs 19
                +++ G++G+GKttl + ++
  CTQ28850.1 32 VAIIGPSGSGKTTLLRSIN 50
                689***********99883 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00041      0.18       9      30 ..      28      49 ..      22      62 .. 0.85
   2 ?   -1.6   0.0       7.1   3.1e+03     105     127 ..     165     189 ..     144     214 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00041
      AAA_19  9 kekvllvtaGpGtGKTrvlkhi 30
                k +v++++++ G+GKT++l+ i
  CTQ28850.1 28 KGEVVAIIGPSGSGKTTLLRSI 49
                67899************99876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 7.1
      AAA_19 105 llivDE.fqdvd.elqyrLlkallg 127
                 +++ DE ++ +d el  ++l+++ +
  CTQ28850.1 165 VILFDEpTSALDpELVGEVLNTIRQ 189
                 6666664456666666666555543 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00073      0.32      50      93 ..      26      73 ..      17      79 .. 0.72
   2 ?   -0.8   0.0       1.9   8.5e+02     185     200 ..      79      94 ..      76     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00073
                EETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--E....EEEESS--- CS
        RecA 50 lpkGriieiyGpessGkttlalhaiaeaqkkggva....afidaehal 93
                + kG ++ i Gp  sGkttl  ++    q ++g++    + ida  +l
  CTQ28850.1 26 VQKGEVVAIIGPSGSGKTTLLRSINLLEQPESGTIrvgdVTIDAGRSL 73
                579****************97766666666666652222345665555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.9
                 EEEE------------ CS
        RecA 185 finqirekiGvmfgnp 200
                 +i q+r+ +G +f n 
  CTQ28850.1  79 LIRQLRQHVGFVFQNF 94 
                 589**********985 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0003      0.13       1      19 [.      31      49 ..      31      69 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0003
        MobB  1 vlgivgksgsGKTtLlekl 19
                v++i+g sgsGKTtLl  +
  CTQ28850.1 31 VVAIIGPSGSGKTTLLRSI 49
                689************9752 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1    0.0022      0.96      62      89 ..     161     188 ..     131     189 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0022
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                  +++++++DE  s lD+e + ++l++++
  CTQ28850.1 161 MRPDVILFDEPTSALDPELVGEVLNTIR 188
                 35889******************99987 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0012      0.51       2      22 ..      29      49 ..      28      64 .. 0.85
   2 ?    0.3   0.0       1.6   6.9e+02      64      98 ..     162     201 ..     137     211 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0012
      AAA_14  2 rkilvitGaRrvGKTtllkql 22
                +++++i G+  +GKTtll+ +
  CTQ28850.1 29 GEVVAIIGPSGSGKTTLLRSI 49
                5799*************9876 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.6
      AAA_14  64 kktylflDEiqev......pewekalkslvdegknldvivt 98 
                 +  ++++DE   +       e+ +++++l +e+ +  vivt
  CTQ28850.1 162 RPDVILFDEPTSAldpelvGEVLNTIRQLAQEK-RTMVIVT 201
                 457788888877766655566677777777776.6677766 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00036      0.16      26      53 ..      22      50 ..       7      69 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00036
       AAA_7 26 lelllknkkpvllvGptGtGKtviikd.l 53
                ++l ++++  v ++Gp+G+GKt+++++  
  CTQ28850.1 22 IDLEVQKGEVVAIIGPSGSGKTTLLRSiN 50
                6777999999**************99853 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00033      0.14      32      64 ..      16      48 ..       6      55 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00033
       Rad17 32 kewlkadvLesrkkriLLisGPsGCgkstvvkv 64
                ++ l+   Le +k +++ i GPsG gk+t ++ 
  CTQ28850.1 16 QTVLHGIDLEVQKGEVVAIIGPSGSGKTTLLRS 48
                567888889********************9986 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00084      0.37      16      33 ..      32      49 ..      25      54 .. 0.88
   2 ?   -0.6   0.0       1.7   7.6e+02     180     206 ..     182     209 ..     174     235 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00084
     Pox_A32 16 lalvGgsGsGktvyLlsL 33
                +a++G sGsGkt+ L+s+
  CTQ28850.1 32 VAIIGPSGSGKTTLLRSI 49
                69*************985 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.7
     Pox_A32 180 kvlnilrsaeqkkrkvliiedsv.fseg 206
                 +vln +r+  q+kr ++i+   + f+ +
  CTQ28850.1 182 EVLNTIRQLAQEKRTMVIVTHEMsFARD 209
                 6788899999899988888655414443 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0039       1.7       2      19 ..      32      49 ..      31      74 .. 0.85
   2 ?    1.7   0.0      0.49   2.1e+02      94     137 ..     161     207 ..     121     226 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0039
                EEEE--TTSSHHHHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlvkkv 19
                v+i Gp+G+GKtTl++ +
  CTQ28850.1 32 VAIIGPSGSGKTTLLRSI 49
                7899**********9876 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.49
                 HHH-EEEE---S.TT..GGG-HHHHHHHHHHHTTTSEEEEE--SS-.- CS
    NTPase_1  94 seadviviDEiG.km..ElkskkfkeaveevLksekpvlavihrrk.d 137
                  ++dvi+ DE    +  El + ++ ++++++ ++++ +++v h+ +  
  CTQ28850.1 161 MRPDVILFDEPTsALdpEL-VGEVLNTIRQLAQEKRTMVIVTHEMSfA 207
                 6677777777431332133.3456678999999888999998887543 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00054      0.23       2      20 ..      32      50 ..      31     134 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00054
                EEEEESTTSSHHHHHHHHH CS
    MMR_HSR1  2 vaivGrpNvGKStLinalt 20
                vai+G + +GK+tL++++ 
  CTQ28850.1 32 VAIIGPSGSGKTTLLRSIN 50
                89**************983 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0014      0.61       1      17 [.      34      50 ..      34      64 .. 0.87
   2 ?   -0.6   0.0       2.2   9.4e+02     108     139 ..     180     211 ..     154     219 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0014
  ATP_bind_1  1 vvGpaGsGKttfvgals 17
                ++Gp GsGKtt+ ++++
  CTQ28850.1 34 IIGPSGSGKTTLLRSIN 50
                79**********99986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.2
  ATP_bind_1 108 seslakiveeLesefalvvvyLvDsqrltdpt 139
                 + +  + +++L++e +++v++  +  +++d++
  CTQ28850.1 180 VGEVLNTIRQLAQEKRTMVIVTHEMSFARDVA 211
                 55556678999999999999988888888855 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00075      0.33       4      23 ..      32      51 ..      29      71 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00075
   PduV-EutP  4 illiGkvgsGKttLtqalkg 23
                + +iG++gsGKttL ++++ 
  CTQ28850.1 32 VAIIGPSGSGKTTLLRSINL 51
                679************99975 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00047      0.21      11      64 ..      26     195 ..      15     220 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00047
                  EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEE............................................................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................................ RF
  ATP-synt_ab  11 ivqGqrtlipgafgvGktvisqslskqsnsddaiiyvg............................................................ 48 
                  + +G+ ++i+g +g Gkt++++s+    + ++ +i vg                                                            
   CTQ28850.1  26 VQKGEVVAIIGPSGSGKTTLLRSINLLEQPESGTIRVGdvtidagrslgpqkglirqlrqhvgfvfqnfnlfphrtvleniiegpvivkgedkqesma 123
                  67999****************88766654444677777777777788888888888888887777777777777777777777777777777777777 PP

                  ........................................................ESEEHHHHHHHHHHCH CS
                  ........................................................xxxxxxxxxxxxxxxx RF
  ATP-synt_ab  49 ........................................................iGergnevaevleefp 64 
                                                                          +Ge  n+++++ +e +
   CTQ28850.1 124 rarellakvglsgkensyprrlsggqqqrvaiaralamrpdvilfdeptsaldpelVGEVLNTIRQLAQEKR 195
                  777777777777777777777777777777777777777777777777766666665555555555555544 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00073      0.32      14      39 ..      24      49 ..       5      57 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00073
                HHHCHTEEEEEEESTTSSHHHHHHHH CS
        TsaE 14 lakalgdvilLeGdLGaGKTtlvrgl 39
                l  + g+v+++ G+ G+GKTtl r++
  CTQ28850.1 24 LEVQKGEVVAIIGPSGSGKTTLLRSI 49
                33333889***************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                       120  (0.00669307); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              41  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 1860.30
//
Query:       CTQ28851.1  [L=222]
Description: putative transporter subunit: permease component of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-26   91.2  11.3    8.4e-26   90.8  11.3    1.2  1  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8  11.3   4.7e-30   8.4e-26       1     183 [.      33     214 ..      33     216 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.8 bits;  conditional E-value: 4.7e-30
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasr 94 
                   g++lG+++a   +++ +++++l r +i +++++P ++ ++++++ +  ++i  + i +++i l l +a+y+  + raa+ s++k+++eaa   G+++
    CTQ28851.1  33 GLVLGFILAlmrMSPVWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTP 129
                   799****************************************999999888899999*************************************** PP

  BPD_transp_1  95 wqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                   wq++r+ +lP+a++++++ l ++f++l+++++l+ ++     +  l+ +a+l+   ++  ++++la+ ++++++ +v+  lq +++  +
    CTQ28851.1 130 WQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQ----VPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSSLQNYFENQL 214
                   **************************************....***************9999************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1620.57
//
Query:       CTQ28852.1  [L=328]
Description: D-cysteine desulfhydrase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-52  178.2   0.5    2.7e-52  178.0   0.5    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.0   0.5   1.5e-56   2.7e-52       4     294 .]      15     316 ..      12     316 .. 0.90

  Alignments for each domain:
  == domain 1  score: 178.0 bits;  conditional E-value: 1.5e-56
                 CSSS--EEEECCTCCCCCCEEEEEEGGGST..TSBTTHHHHHHHHHHHHTTTTTSEEEEEBS..SHHHHHHHHHHHHHT-EEEEEEETTS-........ CS
        PALP   4 gigpTPlvrlprlskelgvplflKlEslnp..tgSfKdRgaeyllarlkegtgaktvveass..GNhgralAaaaallGlkvtivvpadas........ 90 
                    pTPl  lprls++lg ++f+K+++++p  +g++K+R++e+l a++ ++ ga+t+++a++  +Nh r +Aa+aa+lGl ++ ++++           
  CTQ28852.1  15 IGAPTPLEYLPRLSDHLGREIFIKRDDTTPlaMGGNKLRKLEFLAADALRE-GADTLITAGAiqSNHVRQTAAVAAKLGLHCVALLENPIGtraenyls 112
                 5689**************************9****************9999.9********************************77766644445555 PP

                 HHHHHHHHHTT-EEEEECCHHHHHHHH...HHHHHHHSTTCEE--TTT.SHHHHHHHHTHHHHHHHHTT..TTEEEEEEE-SSSHHHHHHHHHHHHHST CS
        PALP  91 pekvallrllGaevvevggdydeavaa...aaelaaegegaylvsqfd.nptviegygtiglEileqlg..gkpdavvvpvGgGgliaGiaaglkerrp 183
                 +++++ll l++ +v+ ++  +d ++++   a +++a+g+ +y+++ ++ n ++ +gy   +lEi +q+    ++  vvv+ G++g++aG+a gl +  p
  CTQ28852.1 113 NGNRLLLDLFNTQVEMCDALTDPSAQLddlATRVEAQGYRPYVIPVGGsNALGALGYVESALEISQQCEdaVAISSVVVASGSAGTHAGLAVGLEQLMP 211
                 6****************877666666666699****************9999*************99994455557*********************** PP

                 T-EEEEEEECTTCGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-H.HHHHHHHHH.HHHHHH CS
        PALP 184 dvrvigvepegsdalarslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvep.ssaaalaal.klreag 280
                 + ++igv ++   ++a+ l    ++ v  ++  a +l+ +  +   + l d++  ++++ ++e+ ++a++lla+ egi+++p ++++a+a+l +   ++
  CTQ28852.1 212 QAELIGVTVS--RSVADQL----PKVVALQQAVANSLELQ--AKAEIILWDDYFAPGYGTPNEDGMAAVKLLAQLEGILLDPvYTGKAMAGLiDGITQK 302
                 *******766..5555555....77788889999999999..77777788************************************************* PP

                 CCTTCEEEEEEE-B CS
        PALP 281 elkegdrvvviltg 294
                 ++k++ ++++++tg
  CTQ28852.1 303 RFKDEGPILFVHTG 316
                 *************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2512.04
//
Query:       CTQ28853.1  [L=266]
Description: cystine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-71  239.4   0.7    3.7e-71  239.1   0.7    1.1  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    3.1e-11   43.5   0.0    9.3e-11   41.9   0.0    1.8  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine
  ------ inclusion threshold ------
       0.01   15.4   0.3       0.48   10.0   0.3    3.0  1  Phosphonate-bd   ABC transporter, phosphonate, periplasmic su
      0.019   14.9   0.4       0.12   12.2   0.2    2.0  2  NMT1             NMT1/THI5 like


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.1   0.7   8.3e-75   3.7e-71       1     224 [.      43     261 ..      43     262 .. 0.97

  Alignments for each domain:
  == domain 1  score: 239.1 bits;  conditional E-value: 8.3e-75
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 lrvg +++ypPfs++ ++g+ltGf+v++a+++ak lgvk +++p++wd+++++l+s+++D++i+++ti++eR++k+dFs+py ++g++ lv+k+++   
  CTQ28853.1  43 LRVGLEGTYPPFSFQGDDGKLTGFEVEFANELAKHLGVKADLKPTKWDGMLASLDSKRIDVVINQVTISDERKKKYDFSTPYTVSGVQALVKKGNE--- 138
                 79******************************************************************************************9644... PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETTTHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkgdseL 198
                   ik+ adLkgkkvgv  g+++ee+l+++ + g++++++d+++  +q+L+ gr+da+++d+ ++ +lvkk ++  +v  +e++s +e+++a+rkg+++L
  CTQ28853.1 139 GVIKTAADLKGKKVGVGLGTNYEEWLRQNVQ-GVDVRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTNNTLAVT-GEAFSRQEAGVALRKGNDDL 235
                 5778888********************9776.**********************************************.******************** PP

                 HHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 199 rkainkalaelkadgtlakisekWfg 224
                 +ka++ a+a++++dg l+++sekWfg
  CTQ28853.1 236 LKAVDGAIADMQKDGSLKALSEKWFG 261
                 *************************9 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   2.1e-14   9.3e-11      43     113 ..      64     135 ..      52     137 .. 0.90

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 2.1e-14
                      HT-EEEEEE-TT-----BET.TTTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEEES CS
  Lig_chan-Glu_bd  43 lgfkYelklvedgkyGskke.kkkewnGmigellekkadlavapltitaeReevvdFtkpfmelgisilikk 113
                      +gf+ e++ +  +++G k + k ++w+Gm+ +l +k++d+++ ++ti+ eR++  dF++p+  +g++ l+kk
       CTQ28853.1  64 TGFEVEFANELAKHLGVKADlKPTKWDGMLASLDSKRIDVVINQVTISDERKKKYDFSTPYTVSGVQALVKK 135
                      6788899999999999876514579*********************************************98 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00011      0.48      18     111 ..      69     155 ..      67     263 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
                     HHHHHHHHHHSSEEEEE--SSHHHHHHHHHTTS-SEEE--HHHHHHHHHHS-EEEEEEEEETT--SEEEEEEEEETTSS..--SHHHHGG-EEEE CS
  Phosphonate-bd  18 pladyLseelGvevelvvatdyaavvealragqvDiaflgplayvqardqagveplatrvrsdGsasyrsviivradsd..iqsledLkgktiaf 110
                     ++a+ L ++lGv+ +l+++   +++  +l++ ++D++  +     + +++++     t+           + +v+++++  i++ +dLkgk++++
      CTQ28853.1  69 EFANELAKHLGVKADLKPT-KWDGMLASLDSKRIDVVINQVTISDERKKKYDF---STPYT-----VSGVQALVKKGNEgvIKTAADLKGKKVGV 154
                     68999**************.59*************998666665555565563...33332.....22245555665544588888888888876 PP

                     - CS
  Phosphonate-bd 111 v 111
                     +
      CTQ28853.1 155 G 155
                     5 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.13     6e+02     102     146 ..      65     106 ..      60     126 .. 0.75
   2 ?   12.2   0.2   2.8e-05      0.12      75     144 ..     130     194 ..     122     213 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.13
                 TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEEC CS
        NMT1 102 pfekallkallakdggdpsdvtlvnvggtslakalltgkvDaaig 146
                 +fe  + ++l ++ g+ ++d++  + +g+ +  +l ++++D++i 
  CTQ28853.1  65 GFEVEFANELAKHLGV-KADLKPTKWDGMLA--SLDSKRIDVVIN 106
                 5566666777777777.77888888888887..899999999983 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.8e-05
                 EEEEEECCC-.-SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEE CS
        NMT1  75 sglivlkdsg.ikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaa 144
                 ++l+ + ++g ik+ +DLkGk++g+  + + +  l++ ++  g+   dv + + + t+ +++l  g++Da+
  CTQ28853.1 130 QALVKKGNEGvIKTAADLKGKKVGVGLGTNYEEWLRQNVQ--GV---DVRTYDDDPTK-YQDLRVGRIDAI 194
                 55666667779*************7765555555555443..33...33443433333.345555666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2183.10
//
Query:       CTQ28854.1  [L=495]
Description: cytoplasmic alpha-amylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-23   84.0   0.2    2.5e-23   83.2   0.2    1.3  1  Alpha-amylase    Alpha amylase, catalytic domain
    7.4e-11   41.0   0.1    0.00029   19.2   0.1    3.0  3  Glyco_hydro_70   Glycosyl hydrolase family 70
    6.8e-07   29.7   0.1    3.2e-06   27.5   0.0    2.2  2  Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
  ------ inclusion threshold ------
      0.041   14.1   0.9       0.14   12.4   0.1    2.1  2  DUF1939          Domain of unknown function (DUF1939)
      0.065   13.4   0.0       0.19   11.8   0.0    1.8  1  Malt_amylase_C   Maltogenic Amylase, C-terminal domain


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.2   6.9e-27   2.5e-23      13     325 ..      31     367 ..      29     376 .. 0.78

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 6.9e-27
                    CCCCT-SCEEE-B-CE..-S-TTTTSS-SCEC.........CE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC-..-TTSCC......CHCCHH CS
  Alpha-amylase  13 lkeLGvtaiwlsPifk..spqadhgYdiadyt.........kidpefGtnedlkeLiskahekgikvilDlVvNHt..sdehew......fkeslk 89 
                    l e+G++ +wl P +k  s     gYd+ d           ++ +++G++++l + i++++e +i v+lD+VvNH   +de+e       ++++++
     CTQ28854.1  31 LNEIGINMVWLPPAYKgaSGGYSVGYDTYDLFdlgefdqkgSVATKYGDKAQLLAAINALKEHNIAVLLDVVVNHKmgADEKEAlrvqrvDEQDRT 126
                    789*************99676778888888652233333335899******************************633455555887777556666 PP

                    STTSGGGCCC-E..............................ESS-STTC-TTTTCSCEECTTTTCEEESSS-TTS-BB-TTTCCCCCCCCCCCCC CS
  Alpha-amylase  90 kkgepkrdyyiwkegk........................eekeppnnwkslfdgsaweydekaqeyylhlflkklpdLnteneevrkelkdvvkf 161
                    + +e+  ++ +w + +                        e+++++   k ++d +   ++e+ ++   + ++   ++++ +n +v +e+k  ++ 
     CTQ28854.1 127 QIDEEIIECEAWTRYTfpvragqysqfvwdykcfsgidhiENPTEDGVFKIVNDYTGEGWNEQVDDELGNFDYLMGANIDFRNHAVTEEIKYWARW 222
                    6666666777777666888888899999999999999888888888888889999999999999999999999999****************8887 PP

                    CCTTT.-SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-S CS
  Alpha-amylase 162 wlekg.idGfRlDvvkhvskvealesngeflheftqalnetvasrkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlks 256
                    ++e+   dGfRlD+vkh++          f + + + ++e++   + +++v+E++s++ e+l++y    + +   ++d p   ++ k++  e++ +
     CTQ28854.1 223 VMEQTgCDGFRLDAVKHIPA--------WFYKAWIEHVQEVA--PQPLFIVAEYWSHEVEKLQQYIDLVEGKTM-LFDAP---LQMKFH--EASRQ 302
                    777767**************........9**********998..9***********999988888776655544.44444...333333..44455 PP

                    S-HHHHHHHHHHHHHHS-CCCTTCEEES--TTS--HHHHTTSSTTTTHHHHHHHHHCCCTSSSEEEEET CS
  Alpha-amylase 257 isakklkellkkwlkaleeaaeeavtflgnHDqeRilsrlgddsaeaekklklaaillltlrGvpviYy 325
                       ++++++++  l + +     avt++ nHD++ +    +  +  ++ k  ++a++ll  +Gvp ++y
     CTQ28854.1 303 GRDYDMSQIFSGTLVEADP--FHAVTLVTNHDTQPLQALEAPVE--PWFKPLAYALILLRENGVPSVFY 367
                    5568889999999988885..899********997766555444..35555566666666777777777 PP

>> Glyco_hydro_70  Glycosyl hydrolase family 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   8.2e-08   0.00029     620     692 ..      55     132 ..      31     141 .. 0.84
   2 !    4.0   0.1    0.0031        11     119     164 ..     181     226 ..     172     270 .. 0.80
   3 !   14.1   0.0   2.8e-06      0.01     346     421 ..     349     428 ..     332     455 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 8.2e-08
  Glyco_hydro_70 620 Gyaftdrydlgl.....skpnkyGtaddlvdaikalhksGikviadwvpdqiynlpekevvtatrvndfGedrkdsei 692
                     Gy   d +dlg      s  +kyG + +l+ ai al+++ i v+ d v +      eke   + rv++   ++ d ei
      CTQ28854.1  55 GYDTYDLFDLGEfdqkgSVATKYGDKAQLLAAINALKEHNIAVLLDVVVNHKMGADEKEALRVQRVDEQDRTQIDEEI 132
                     55555555555322222789***********************************************99988888877 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0031
  Glyco_hydro_70 119 qtGkkdpkytesdkGGyelllandvdnsnpvvqaeqlnwlyylmnf 164
                      tG+   +  + + G +++l+  ++d  n  v  e   w  ++m+ 
      CTQ28854.1 181 YTGEGWNEQVDDELGNFDYLMGANIDFRNHAVTEEIKYWARWVMEQ 226
                     56776555566679****************************9974 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 2.8e-06
  Glyco_hydro_70 346 asayallltnkdsvprvyyGdlyt....d...dGqymatkspyydaietllkarikyvaGGqamkvvevdkdevltsvryGkg 421
                     ++ayal+l   + vp v+y dl+     d   dG+  a   p  + ++ l+ ar +++ G q++     d+ + ++  r G++
      CTQ28854.1 349 PLAYALILLRENGVPSVFYADLFGasyeDtggDGETYAIEMPVIEQLHELIDARQRFAHGVQTLWF---DHPNCIAFSRSGTD 428
                     78********************8533333445899999************************9877...66666666666665 PP

>> Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.1   3.9e+03      35      66 ..     139     169 ..     136     191 .. 0.65
   2 !   27.5   0.0     9e-10   3.2e-06       3      95 ..     415     491 ..     413     492 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.1
                      ECEEESSSSSEEEEETTCTTSGCCTTT-.SSTS CS
  Alpha-amylase_C  35 qdyrvgvpaagkyrdvlntdaeeyggsg.lgnt 66 
                      ++y+++v  ag+y  ++  d + + g + ++n 
       CTQ28854.1 139 TRYTFPVR-AGQYSQFV-WDYKCFSGIDhIENP 169
                      67888776.99999888.677777777434443 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 9e-10
                      EEEETTSSEEEEEECT.TT.EEEEEEE-SSSSEEECEEESSSS.SEEEEETTCTTSGCCTTT-SSTSS-EEEECTTCBSEEEEEEESTTEEEEE CS
  Alpha-amylase_C   3 sakdeenkviaFeRgd.ge.kllvvfNfhpsnsrqdyrvgvpa.agkyrdvlntdaeeyggsglgntgkvvtvdddgransltltlpprsalvl 93 
                      +    ++++iaF+R + ++  ++vv+  ++++ ++++++g +  + ++rd+l +           n++++v++d++g    +t+t++  s++v+
       CTQ28854.1 415 D----HPNCIAFSRSGtDDdPGCVVIMSNGDEGEKTLTLGENYgNKRWRDFL-G-----------NREEIVETDGEG---CATFTCNGGSVSVW 489
                      4....69*******99855567777777888************8999*****.3...........455699999999...*************9 PP

                      EE CS
  Alpha-amylase_C  94 kv 95 
                       +
       CTQ28854.1 490 VL 491
                      76 PP

>> DUF1939  Domain of unknown function (DUF1939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.54   1.9e+03      25      40 ..     178     192 ..     176     195 .. 0.79
   2 ?   12.4   0.1   3.8e-05      0.14      12      56 ..     445     489 ..     434     490 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.54
     DUF1939  25 ikdytGnssvdvtvde 40 
                 + dytG+ +++ +vd 
  CTQ28854.1 178 VNDYTGE-GWNEQVDD 192
                 579***7.78888875 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 3.8e-05
     DUF1939  12 ksrwvqskwagatikdytGnssvdvtvdedGwvkievppkgySvw 56 
                 k  + + ++ + +  d++Gn    v +d +G   + +   ++Svw
  CTQ28854.1 445 KTLTLGENYGNKRWRDFLGNREEIVETDGEGCATFTCNGGSVSVW 489
                 55567789************************************* PP

>> Malt_amylase_C  Maltogenic Amylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.4e-05      0.19       9      56 ..     415     466 ..     409     481 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.4e-05
                     S-TTEEEEEEEETT...EEEEEEEESS-EEEEE--G.GGTT-EEEETTTTEE CS
  Malt_amylase_C   9 dnrkvlaYlReyed...etilvvaNrsaqaveldls.elagrvpvelfggee 56 
                     d+++++a+ R+  d     ++++ N  + + +l+l  ++ ++++++ +g+ e
      CTQ28854.1 415 DHPNCIAFSRSGTDddpGCVVIMSNGDEGEKTLTLGeNYGNKRWRDFLGNRE 466
                     7899*******99954455888889************************944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 3880.63
//
Query:       CTQ28855.1  [L=143]
Description: hypothetical protein CH1034_240352 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-53  178.0   0.0      4e-53  177.7   0.0    1.1  1  YedD      YedD-like protein
  ------ inclusion threshold ------
      0.068   13.7   2.5       0.15   12.6   2.5    1.6  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> YedD  YedD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7   0.0   4.5e-57     4e-53       1     105 [.      25     129 ..      25     130 .. 0.99

  Alignments for each domain:
  == domain 1  score: 177.7 bits;  conditional E-value: 4.5e-57
                 -------TTT-EEEE--S--TTSSSTT-EEEEEE-TTSEEEEEEESSSEEEEEEEEEEETTEEEEEETT--EEEEEEETTEEEETTEEEEEESS--HHH CS
        YedD   1 vvktPaPaelaGyWqskgPqkklvspeaiaslivtkeGdtldcrqWqrviakPgkltrldddlvnvtkklevyelelegdeleydgltlervdrptaec 99 
                 vvk+PaPa+laG+Wq+kgPq++++sp+aiaslivtkeGdt+dcrqWqrvia+Pgkl+++d++++nvt++l++y++e+eg++++yd++tl+rv+r+t ec
  CTQ28855.1  25 VVKAPAPAGLAGFWQTKGPQSAMMSPDAIASLIVTKEGDTFDCRQWQRVIAQPGKLMNRDSEIYNVTASLDIYPVEREGNTISYDRMTLSRVERLTPEC 123
                 8************************************************************************************************** PP

                 HHHHHH CS
        YedD 100 qdalak 105
                 ++a+ak
  CTQ28855.1 124 EKAWAK 129
                 ***998 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.5   1.6e-05      0.15       2      17 ..       2      16 ..       1      16 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
      LPAM_1  2 KKillalgalllLsGC 17
                KK l+++g++++L+GC
  CTQ28855.1  2 KK-LFFAGMVVALAGC 16
                55.7899********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1197.71
//
Query:       CTQ28856.1  [L=207]
Description: DNA-binding transcriptional activator, co-regulator with RcsB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-18   63.5   2.2    1.8e-17   62.6   2.2    1.5  1  GerE      Bacterial regulatory proteins, luxR family
  ------ inclusion threshold ------
      0.069   13.6   0.5       0.23   11.9   0.5    1.9  1  HTH_40    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   2.2     2e-21   1.8e-17       2      56 ..     137     191 ..     136     192 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 2e-21
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                 sLsk E+ +L+++++G  + +I+ ++ni++kTV++hk+ni kK++++++++++++
  CTQ28856.1 137 SLSKTESNMLQMWMAGHGTSQISTQMNIKAKTVSSHKGNIKKKIQTHNKQVIYHI 191
                 8**************************************************9986 PP

>> HTH_40  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   2.6e-05      0.23       5      35 ..     145     175 ..     141     197 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.6e-05
      HTH_40   5 tlelleeglsieeIAkerglkesTIegHLae 35 
                  l++++ g+   +I+++ ++k +T+ +H  +
  CTQ28856.1 145 MLQMWMAGHGTSQISTQMNIKAKTVSSHKGN 175
                 589*************************555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1216  (0.0678231); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1677.31
//
Query:       CTQ28857.1  [L=63]
Description: hypothetical protein CH1034_240354 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-36  122.1   0.1      6e-36  121.9   0.1    1.0  1  DSRB      Dextransucrase DSRB


Domain annotation for each model (and alignments):
>> DSRB  Dextransucrase DSRB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   0.1   3.4e-40     6e-36       1      60 [.       1      60 [.       1      61 [. 0.98

  Alignments for each domain:
  == domain 1  score: 121.9 bits;  conditional E-value: 3.4e-40
        DSRB  1 mkvndrvtvktDgeerReGtiLaveeFseGvmYLvaLedYPeGiWFFnekesadGvFvep 60
                m+vndrvtvktDg++rR+G++La+e FseG+mYLv+LedYP GiWFFne  ++dG+Fve 
  CTQ28857.1  1 MQVNDRVTVKTDGGPRRSGVVLAIESFSEGTMYLVSLEDYPLGIWFFNEIGHPDGIFVEK 60
                9*********************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 547.86
//
Query:       CTQ28858.1  [L=74]
Description: hypothetical protein CH1034_240355 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-31  106.4   0.7      8e-31  106.1   0.7    1.1  1  DUF2525   Protein of unknown function (DUF2525)


Domain annotation for each model (and alignments):
>> DUF2525  Protein of unknown function (DUF2525)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.7   4.5e-35     8e-31       1      60 []      17      74 .]      17      74 .] 0.99

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 4.5e-35
     DUF2525  1 dvdALLaAineisesevqefidnddahrvtvdgreydtyrELaeaFELDIrDftvsEvNr 60
                +vdALLaAineisesev++  + dd++r+++dgr ++t+rELaeaFELDI+Df++sE+Nr
  CTQ28858.1 17 NVDALLAAINEISESEVHR--TLDDPQRASIDGRGSHTWRELAEAFELDIHDFSASEANR 74
                7*****************9..**************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 650.71
//
Query:       CTQ28859.1  [L=559]
Description: putative diguanylate cyclase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-78  262.5   0.3    2.6e-78  261.9   0.3    1.3  1  CHASE7    Periplasmic sensor domain
    1.6e-46  158.0   0.1    2.6e-46  157.3   0.1    1.4  1  GGDEF     Diguanylate cyclase, GGDEF domain
     0.0058   16.9   0.2      0.022   15.0   0.2    2.0  1  GGDEF_2   GGDEF-like domain


Domain annotation for each model (and alignments):
>> CHASE7  Periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.9   0.3   4.4e-82   2.6e-78       1     186 [.      37     222 ..      37     223 .. 0.99

  Alignments for each domain:
  == domain 1  score: 261.9 bits;  conditional E-value: 4.4e-82
      CHASE7   1 twrevvvledayvasqrnqlaevakaldrqlQfsvdkLlflrngmeealqapldldalraavqqfeerRdkpaWqlelnrrralpvfGvsdafvarstl 99 
                 +wre++vle+ayva+qrn+la+va+++d +lQf++d+++f+r+gm++al++pld+d lr+a q++ ++R+++aW+++l++rr+lpvfG+s+++++++++
  CTQ28859.1  37 IWREINVLEEAYVANQRNNLANVAHEMDGLLQFNIDRMMFFRHGMQAALEQPLDIDVLRKASQRYLSQRHQQAWRVALPNRRTLPVFGISGSVAGDNPI 135
                 7************************************************************************************************** PP

      CHASE7 100 lsrddaklaneltaalelsyllsladnsadlaeriaYvSraGfyvstlPlaseqdveeryaqlvsaawFreqsqreNparkvrWtts 186
                 l+++d+++a+el+a+lel+yll+l+++++d+aer++Y+Sr+Gf++stlPl++e++v ++y+q++ a+wF++q+qr+Np+r+v+W+t+
  CTQ28859.1 136 LLVNDPLAADELMATLELGYLLNLTQHDRDFAERMQYISRSGFFTSTLPLRDESQVITHYSQALGAPWFTRQTQRNNPGRGVIWQTF 222
                 ************************************************************************************986 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.3   0.1   4.3e-50   2.6e-46       1     161 []     393     552 ..     393     552 .. 0.97

  Alignments for each domain:
  == domain 1  score: 157.3 bits;  conditional E-value: 4.3e-50
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a hD+lT+L NR +l e+     ++++r++++lav+ ldld+Fk+ind+yGh++GD+vL+ va++Lss++r++dl++R+gg+eF+i++p+t+++eaa++
  CTQ28859.1 393 AWHDALTRLLNRGALFEQAMAVASDCQRSGRPLAVIQLDLDHFKHINDRYGHQAGDRVLSMVASTLSSAVRQGDLLGRVGGEEFCIVMPNTTLQEAAAV 491
                 68************************999********************************************************************** PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSSC CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrnr 161
                 aer+r+ ++  +  ++ ++ +l v++s+G+++++++ + ++e l + Ad  ly aK++grn+
  CTQ28859.1 492 AERLRQRIQGREVFLH-NNVTLRVSASLGVSASEERGEYQFEALQSVADGRLYLAKQNGRNQ 552
                 *********9998655.667778*************************************97 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   3.6e-06     0.022      23      87 ..     425     514 ..     411     526 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.6e-06
     GGDEF_2  23 yvvvviel...........eedaerllraleealral..gpdalvavrgdrlvlllpaedeedaeallerlarrlgg............l 87 
                  +v+ ++l           +++++r+l+ +++ l+++  + d l  v g+++ +++p  + ++a+a++erl++r++g            +
  CTQ28859.1 425 LAVIQLDLdhfkhindrygHQAGDRVLSMVASTLSSAvrQGDLLGRVGGEEFCIVMPNTTLQEAAAVAERLRQRIQGrevflhnnvtlrV 514
                 55555555666666654444477889********8887555666667777**************************97777777755443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 4655.58
//
Query:       CTQ28860.1  [L=303]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-114  381.1  11.5   3.8e-114  380.8  11.5    1.0  1  DUF808    Protein of unknown function (DUF808)
     0.0052   16.5   0.5     0.0052   16.5   0.5    2.3  2  TerC      Integral membrane protein TerC family
  ------ inclusion threshold ------
       0.26   11.1   0.0       0.31   10.8   0.0    1.1  1  AAA_11    AAA domain
       0.32   11.1   4.7       0.96    9.6   4.7    1.9  1  SirB      Invasion gene expression up-regulator, SirB


Domain annotation for each model (and alignments):
>> DUF808  Protein of unknown function (DUF808)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  380.8  11.5  8.4e-118  3.8e-114       1     303 [.       4     290 ..       4     291 .. 0.93

  Alignments for each domain:
  == domain 1  score: 380.8 bits;  conditional E-value: 8.4e-118
      DUF808   1 sgllaLlDdiaalaklaaaslDDvaaaakkaakkaagvvvDDlavtaqqvsgvkaeRElpvvwkiakgSllNKlvillPaalllsafapwlitplLmlG 99 
                 s+ll+LlDdia+l       lDD++++ k+aakk+agv++DDl+++aqqv+gv+a+RElpvvw +akgS++NK vil+P+all+saf+pw+itplLmlG
  CTQ28860.1   4 SSLLTLLDDIATL-------LDDISVMGKVAAKKTAGVLGDDLSLNAQQVTGVRANRELPVVWGVAKGSFVNK-VILVPLALLISAFIPWAITPLLMLG 94 
                 69***********.......*****************************************************.************************* PP

      DUF808 100 gayLcfEGaeKvlekllhkeee.....eeeeeeeaeeadlaelEkekvkgairtDfiLSaEiivialgevaeeslltqvlvlvvvavliTvgvYGlVal 193
                 ga+LcfEG+eKvl++l  ++++     ++++ ++ +e+d  ++E++kvkgairtDfiLSaEi++i+lg vae++ll+q+l+l+ +a+l+T+gvYGlV++
  CTQ28860.1  95 GAFLCFEGVEKVLHSLEARKHKedperRQQRLAALAERDPLAFERDKVKGAIRTDFILSAEIVAITLGIVAEAPLLNQILILSGIAILVTIGVYGLVGV 193
                 ****************5333331223233333444555999********************************************************** PP

      DUF808 194 ivklDdvGlalakkkksklarklGrglvkamPkllkllsvvGtaAmllVgggilvhgleelglealaelvhhlaeavaeaaaalgavlewlvetllsav 292
                 ivklDd+G +la+ k+s+la+ lG+gl++++P+l+k+ls+vGt+Am+lVgggi+vhg++          +hh++e++++    lg+v++ ++++++++v
  CTQ28860.1 194 IVKLDDMGYWLAE-KRSALAQWLGKGLLAVAPRLMKVLSIVGTLAMFLVGGGIVVHGIA---------PLHHAIEHWSA---GLGGVMASTLPVVANLV 279
                 *************.559******************************************.........89999988876...789************** PP

      DUF808 293 vGlvvGavvva 303
                 +G+++Gavv+a
  CTQ28860.1 280 LGFIIGAVVLA 290
                 ********985 PP

>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.5   1.2e-06    0.0052      29      97 ..      52     125 ..      46     221 .. 0.64
   2 ?   -2.5   3.7      0.79   3.6e+03      79      79 ..     191     191 ..     134     291 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.2e-06
        TerC  29 qqkkalllGil.gAlvlRillillavallelf.....dlilligglfLlytavkellekrlenklvkeekkkkkk 97 
                 +++  +++G++ g +v +++l+ la  l+++f     + +l++gg+fL++ +v+ +l++ ++ k++++ ++++++
  CTQ28860.1  52 NRELPVVWGVAkGSFVNKVILVPLA-LLISAFipwaiTPLLMLGGAFLCFEGVEKVLHSLEARKHKEDPERRQQR 125
                 5666678998834455555555555.55555335555889****************9987333333333333332 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.79
        TerC  79 l 79 
                 +
  CTQ28860.1 191 V 191
                 2 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.8e-05      0.31     152     212 ..     110     170 ..      38     176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.8e-05
      AAA_11 152 lkkskekskskleqerrklkkerkelskeleeaeesleeevldeaeivltTlsgagsklle 212
                 l+  k+k+  +++q+r +  +er+ l  e ++++ +++++++ +aeiv+ Tl +++++ l 
  CTQ28860.1 110 LEARKHKEDPERRQQRLAALAERDPLAFERDKVKGAIRTDFILSAEIVAITLGIVAEAPLL 170
                 5566778888899999999999******************************999876665 PP

>> SirB  Invasion gene expression up-regulator, SirB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.7   0.00021      0.96      45     110 ..     170     241 ..     151     250 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00021
        SirB  45 vdtlLllsgiaLlvllglspftka.........WltaKlvllvvyivlgvvalkrakskklrllafvlAlvvfly 110
                 ++ +L+lsgia+lv++g++ ++           Wl +K  +l+  ++ g++a+     + +++l +v+ l++fl+
  CTQ28860.1 170 LNQILILSGIAILVTIGVYGLVGVivklddmgyWLAEKRSALAQWLGKGLLAV---APRLMKVLSIVGTLAMFLV 241
                 5679**************999544556788999********************...7788888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2330.55
//
Query:       CTQ28861.1  [L=303]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-38  129.4  48.4    3.5e-19   69.3  23.5    2.0  2  EamA             EamA-like transporter family
     0.0017   17.8  12.7       0.19   11.0   0.6    2.1  2  TPT              Triose-phosphate Transporter family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3  17.0   3.3e-22     3e-18       7     136 ..      13     140 ..       7     141 .. 0.93
   2 !   69.3  23.5   3.9e-23   3.5e-19       2     136 ..     150     284 ..     149     285 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 3.3e-22
        EamA   7 allaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlaf.llffyalkktsasnaslitslePvf 104
                 +++  ++w+++++++ +++++++pl+++++rfl+ag+lll ++l +++kl  + ++++l  +l+g+l  ++++ ++ +   +++++++a+++++++P+f
  CTQ28861.1  13 LFALYIIWGSTYFAIAVGVASWPPLMMAGIRFLAAGVLLLGWLLATGHKL--PARRPLLNAALIGVLLLAVGNgFVTLAEHQHVPSGIAAVMVATVPLF 109
                 4566799*******************************************..*********************555666789***************** PP

        EamA 105 tlilsvlllgekltlkqllgivlillGvllil 136
                 tl++s ++ g    ++++lgi+++l+G+++++
  CTQ28861.1 110 TLCFSRFF-GIATRKLEWLGIAIGLAGIVMLN 140
                 ********.********************987 PP

  == domain 2  score: 69.3 bits;  conditional E-value: 3.9e-23
        EamA   2 lgillallaalfwaiyfvlskillrkvspl.tltfvrfliagillliiallkegkl.aklslkdwllllllgllgtvlafllffyalkktsasnaslit 98 
                 +g+ll+l+++l+wa++ v+  ++   +++  ++ ++ +l+agi+ll+ ++l++++l +++s++++++l++l+++g+++a  +++ +++++++++a+ + 
  CTQ28861.1 150 WGALLILIGSLSWAFGSVYGSRI--VLPTGmMAGAIEMLAAGIVLLAASWLSGETLtRVPSWSGIAALAYLAIFGSLIAINAYMFLIRNVTPAVATSYA 246
                 9*******************776..3444326667**************************************************************** PP

        EamA  99 slePvftlilsvlllgekltlkqllgivlillGvllil 136
                 ++ Pv++++l+  + ge+l+l+++l++++i+++v+l++
  CTQ28861.1 247 YVNPVVAVLLGTGFGGESLSLIEWLALAVIIFAVVLVT 284
                 ************************************97 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.6   2.2e-05      0.19      31     134 ..      36     138 ..      27     174 .. 0.70
   2 !   10.9   6.2   2.4e-05      0.21      29     139 ..     175     287 ..     166     294 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.2e-05
         TPT  31 Pltvsavqllvgsvlilvlwalglkk...rpkisseflkailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLl 126
                 Pl+++ +++l+  vl+l  + +  +k   r  +  + l+ +l la+ + +   ++    ++v+   + ++ a+ P+Ft  +sr+ +g  +  l +l + 
  CTQ28861.1  36 PLMMAGIRFLAAGVLLLGWLLATGHKlpaRRPLLNAALIGVLLLAVGNGF---VTLAEHQHVPSGIAAVMVATVPLFTLCFSRF-FGIATRKLEWLGIA 130
                 77777777776666643333333333111444444455555555555555...55555689**********************9.78888999999999 PP

         TPT 127 pivgGval 134
                 + ++G+++
  CTQ28861.1 131 IGLAGIVM 138
                 99999765 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 2.4e-05
         TPT  29 pyPltvsavql.lvgsvlilvlwalglkkrpkisseflkailplalvktlghvlavvsls.kvaVSfthtvKasePiFtvilsrlllgeklsllvylsL 125
                 p  ++ +a+++ ++g+vl++++w +g + +   s++ ++a+  la++  l  + a + l  +v+   +     ++P+ +v+l + + ge+lsl  +l+L
  CTQ28861.1 175 PTGMMAGAIEMlAAGIVLLAASWLSGETLTRVPSWSGIAALAYLAIFGSLIAINAYMFLIrNVTPAVATSYAYVNPVVAVLLGTGFGGESLSLIEWLAL 273
                 6667888887615688899999*99877766668889999*****999999999988764244444444444579************************ PP

         TPT 126 lpivgGvalasvtE 139
                  +i+  v+l ++  
  CTQ28861.1 274 AVIIFAVVLVTLGK 287
                 *********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 2149.06
//
Query:       CTQ28862.1  [L=167]
Description: DNA mismatch endonuclease of very short patch repair [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-34  117.1   0.1    3.6e-34  116.4   0.1    1.3  1  Vsr       DNA mismatch endonuclease Vsr


Domain annotation for each model (and alignments):
>> Vsr  DNA mismatch endonuclease Vsr
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.1     2e-38   3.6e-34       1      73 [.       5      77 ..       5      78 .. 0.99

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 2e-38
                XXSSXHHHHHHHHHTXXSSSXHHHHHHHHHHHHTT--EEES-TTSTT--SEEEGGGTEEEEEE-TTTTT-SST CS
         Vsr  1 aDvydkakRskvmakikskdtkpElrlaklltglGlryRkndkslaGkPDvvlkkykvvvFvhGcFWHghdce 73
                aDv+dka+Rsk+m++i+++dt++E+r+a lltg G+ +  +d+ l+G+PD+ l++y++v+F+hGcFWH+hdc+
  CTQ28862.1  5 ADVHDKATRSKNMRAIATRDTAIEKRIAALLTGAGFTFVAQDRALPGRPDFTLPDYRCVIFTHGCFWHHHDCY 77
                6***********************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1353.36
//
Query:       CTQ28863.1  [L=466]
Description: DNA cytosine methylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-75  252.4   0.0    9.6e-75  252.0   0.0    1.1  1  DNA_methylase  C-5 cytosine-specific DNA methylase
    4.7e-21   74.4   1.6    2.8e-19   68.7   1.2    2.4  2  DNA_meth_N     DNA methylase N-terminal domain
  ------ inclusion threshold ------
       0.12   12.0   0.0       0.26   10.9   0.0    1.5  1  Cons_hypoth95  Conserved hypothetical protein 95


Domain annotation for each model (and alignments):
>> DNA_methylase  C-5 cytosine-specific DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.0   0.0   1.6e-78   9.6e-75       1     331 [.      81     442 ..      81     445 .. 0.87

  Alignments for each domain:
  == domain 1  score: 252.0 bits;  conditional E-value: 1.6e-78
                    -EEEEES-TT-HHHHHHHHTT-EEEEEEE--TTTHHHHHHH-.........-SEEEES-TTTS-.............GS--.-SEEEE---GGGTE CS
  DNA_methylase   1 lkfidLfaGiGGfrlgleaagfecvaaseidkkaaktYeanfk........kvsigDitkidkk.............klpediDlLvgGfPCqpfS 75 
                    ++fidLfaGiGG+r g+ea+g++cv+ se++k+a+ tY+an+         +++i Dit  + +             ++p ++D+L++GfPCqpfS
     CTQ28863.1  81 FRFIDLFAGIGGIRSGFEAIGGQCVFTSEWNKHAVRTYKANWYcdpqqhrfNEDIRDITLSQRSdvsdeeaarhireSIP-QHDVLLAGFPCQPFS 175
                    79****************************************9999986666667777777666999******9999999.6************** PP

                    CTSE........E--TT.SGGGHHHHHHHHHHHHH--SEEEEEEEGGGGGGCCSHHHHHHHHHHHHHTEEEE.........EEEEEGGGTT-SB-- CS
  DNA_methylase  76 vaGk........qkgfe.dtrgtLffeiiriikekkPkvfllENVkgLlkhdkgktlkvilekleelGYevs.........ykllnasdyGvpQnR 153
                     aG          +gf+ +t+gtLff+++rii +++P++f+lENVk+L++hd+g+t+ +i+++l+elGYev          +k+++ +++  pQ R
     CTQ28863.1 176 LAGVskknamgrAHGFAcETQGTLFFDVVRIIAARQPAIFVLENVKNLKSHDQGRTFRIIMQTLDELGYEVAdaehtgpddPKVIDGRHF-LPQHR 270
                    ***8665555544555434555********************************************************************.9**** PP

                    EEEEEEEEEGGG----------SS---GGG.....TSGGGTTS-EEBTTTB--GGGSSSTT-EE--.......S---HHHTS--B--TTS...-B- CS
  DNA_methylase 154 eRvfivgirkdlelnvlvkvkefrfpkkkdleasktlrdlleekseldeektalsdklvekeekikkttkaseegypkelsrnridkveelkglsa 249
                    eR+++vg+r dl+l  +   + ++   ++  ++++t+ +lle    + + k  l+  l++   + +++++a ++g+ + l++   +    +++lsa
     CTQ28863.1 271 ERIVLVGFRRDLQL--HAGFTLRDIAAQY-PAVRPTFGELLEP---TVDAKFILTPVLWKYLYRYARKHQARGNGFGYGLVDP-ANPHSVARTLSA 359
                    ***********996..5777777777777.48899*******8...6899999999999998888899999999***767777.88899999**** PP

                    ---S-STT--B-TTS---EEEETTEEE--T.TTGGG--B-BHHHHHHHHT--TT....-----SBHHHHHHHHTS--HHHHHHHHH CS
  DNA_methylase 250 trrksgrgeklekelaeagklqknkerfkpviekkriRrLtprEaarlqGfPdd....fefgskksaaykqiGnsVpvpvieaiak 331
                     ++k g   ++        +l+++   ++p++++ r+RrLtprE+arl+Gf++     f +++++++ay+q+GnsV+vpv  a+ak
     CTQ28863.1 360 RYYKDGA--EILVDRGWDRPLGEKHF-DDPLNQQRRPRRLTPRECARLMGFESPqgarFRIPVSDTQAYRQFGNSVVVPVFAAVAK 442
                    *****96..44444444444555544.4569********************9988999*************************998 PP

>> DNA_meth_N  DNA methylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   1.2   4.8e-23   2.8e-19       1      57 []      13      69 ..      13      69 .. 0.99
   2 ?    3.6   0.0      0.01        62      37      53 ..     388     404 ..     386     406 .. 0.90

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 4.8e-23
  DNA_meth_N  1 aLLeqvLeIYDqKtvaeeLrkvgeseWsretLnRwvkgksaarrLteaEvalLrkLL 57
                aLL+q+++IYD+Kt+++eL +vge++Ws ++L+R+ +  +aa+rL+ +Eva+L++LL
  CTQ28863.1 13 ALLRQLMTIYDVKTLVAELVSVGEQHWSAAILKRVAALGRAAERLRPQEVAHLATLL 69
                7*******************************************************9 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.01
  DNA_meth_N  37 kgksaarrLteaEvalL 53 
                 ++++++rrLt +E+a+L
  CTQ28863.1 388 NQQRRPRRLTPRECARL 404
                 78999**********99 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.4e-05      0.26      42      85 ..      80     123 ..      73     152 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.4e-05
                    C-EEEETT-TTSHH..HHHHHHTT-SEEEEEES-HHHHHHHHHHHC CS
  Cons_hypoth95  42 garvLDlfaGsGal..glEAlSRgakkavlvekdkeavkilkenle 85 
                    g r++DlfaG G++  g+EA+  +   +   e +k+av++ k+n+ 
     CTQ28863.1  80 GFRFIDLFAGIGGIrsGFEAIGGQ--CVFTSEWNKHAVRTYKANWY 123
                    679*********98779****765..67889***********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3594.47
//
Query:       CTQ28864.1  [L=235]
Description: putative metal-dependent phosphohydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-13   48.8   0.1    1.4e-12   47.9   0.1    1.4  1  HD        HD domain


Domain annotation for each model (and alignments):
>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.1   7.7e-17   1.4e-12       3     120 ..      28     130 ..      27     132 .. 0.90

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 7.7e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHH.CTCCHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHTTCCHHHHHHHHH CS
          HD   3 eHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeee.fekflaHekvgaeilrevekrlgld.ledvaklirehheswegkkrpr 99 
                  H ++V+  a +la  ++   dr +ll+a+++HDi+  p ++     +e  + +++a ek  a il+ ++ ++  d   +v+++i++h++s  ++    
  CTQ28864.1  28 SHFRRVWATATQLAAGEE--VDRLVLLTACYFHDIVSLPKNH-----PERsRSSMMAAEKTLA-ILQSAFADFPADrYPAVSHAIEAHSFSAAIP---- 114
                 7**************999..*******************999.....5555778888888888.8888888886669***************977.... PP

                 HHHCCTSCHHHHHHHHHHHHH CS
          HD 100 glaerqlslearivklaDrla 120
                      + +lea+iv++aDrl+
  CTQ28864.1 115 -----PRTLEAKIVQDADRLE 130
                 .....**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1872.69
//
Query:       CTQ28865.1  [L=93]
Description: putative outer membrane protein N [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0073   16.0   0.2     0.0088   15.7   0.2    1.1  1  DUF4310   Domain of unknown function (DUF4310)


Domain annotation for each model (and alignments):
>> DUF4310  Domain of unknown function (DUF4310)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   4.9e-07    0.0088     124     187 ..      22      82 ..      12      88 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 4.9e-07
     DUF4310 124 iGviiilirkl..tinqsnstfGadvmmGaGnasGrflGpliilsavaasipiGlGslvGaalfyk 187
                  G+ + +i ++  ++ + +s  Ga v    G ++G++lG l+ +      +  G+Gs++Ga+++y+
  CTQ28865.1  22 CGYCVWVIVRYwwVVGKIHSVPGASVEGDFGTTAGKWLGALLGM-----LVLGGIGSILGAVVWYT 82 
                 5665554443322688999********************99755.....4567***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 805.57
//
Query:       CTQ28866.1  [L=381]
Description: outer membrane pore protein N, non-specific [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-149  498.1  27.1   1.6e-149  498.0  27.1    1.0  1  Porin_1   Gram-negative porin
    1.8e-21   77.2  31.8    2.4e-21   76.8  31.8    1.1  1  Porin_4   Gram-negative porin


Domain annotation for each model (and alignments):
>> Porin_1  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  498.0  27.1  1.8e-153  1.6e-149       1     340 []      27     381 .]      27     381 .] 0.96

  Alignments for each domain:
  == domain 1  score: 498.0 bits;  conditional E-value: 1.8e-153
                 CTTEEEEEEEEEEEEEEEESTTSTCEEEEEEEEEEEEEEESSSSEEEEEEEEEEEESSSBTTCTTTCEEEEEEEEEEETTTEEEEEEEEE-TTHHHHCT CS
     Porin_1   1 KdgnkldlygkvtklhyfsdeksedgddtyariGfKGetqindqLtgygqwEyevkvngtegesaqsktrlaFaGLkfgevGsldyGrnygvvydveaw 99 
                 K+gnkldlygkv++lhyfsd++sedgd+ty+r+G+KGetqi ++LtgygqwEy++++n++e e a+s+trl+FaGLkf+++GsldyGrnygvvyd+e+w
  CTQ28866.1  27 KNGNKLDLYGKVDGLHYFSDDASEDGDQTYVRFGLKGETQITSELTGYGQWEYNIQANTSEKEGANSWTRLGFAGLKFADCGSLDYGRNYGVVYDIESW 125
                 8************************************************************************************************** PP

                 TTTSSSSSSCTSSCTTSTTTSEECCEEEEEESCCCCTSTTEEEEEEEE--B-TS............SSTTT-BESEEEEEEEEEETT..EEEEEEEEEE CS
     Porin_1 100 tdvlpefggdtvaqtdnfmtkrangvatYrntdFfGlvdglnfalqyqgknedts.....tnn...rnlkksngdgygvslsYeveGfalsvagayars 190
                 td+lpefggdt++qtd++mt+r+ngvatYrn+dFfGlvdgl+falqyqg+ne+ +     + n   r+l+++ngdg+g+s  Y+ + +++s ++ay++s
  CTQ28866.1 126 TDMLPEFGGDTYTQTDVYMTGRTNGVATYRNSDFFGLVDGLHFALQYQGNNENAGsgegtN-NggkRKLARENGDGFGISSYYDLD-MGISFGAAYSSS 222
                 *****************************************************98999963.3357999*****************.9*********** PP

                 EE-CHHC......TSSCSSTSEEEEEEEEEEEEETTEEEEEEEEEECSESEEE...EEEEESEEEEEEEEEEE-B.TTS..EEEEEEEEEEEEECETT. CS
     Porin_1 191 drtakqklelkseakllgngkkaevwalglkYdanniylaaaYaetrnatlvg...asgianktqnlevvaqyqf.dfG..lrPsiaYvqskgkdleg. 282
                 drt++q + +   +++++ng+ka++w++g+kYdanniylaa+Yaetrn+t +g     gianktqn+evvaqyqf df   lrPs+aY+qskgkdl   
  CTQ28866.1 223 DRTHNQLA-AARSSQRYANGDKADAWTVGAKYDANNIYLAAMYAETRNMTFYGndsFGGIANKTQNFEVVAQYQFdDFNlpLRPSVAYLQSKGKDLYAy 320
                 *****885.66788999************************************8766899***************8798889**************887 PP

                 .STCCEEEEEEEEEEEEEECCSSEEEEEEEEEE-S-TTSSC..CTSSTSC-EEEEEEEEEE CS
     Porin_1 283 .kkgdndlvkyvdvGatYyFnKnmsayVdykinlldkdddk..elgistddivavglvyqF 340
                  ++gd+dlvkyvdvG+tYyFnKnms+yVdykinlld+dd +  ++gi+tddiva+glvyqF
  CTQ28866.1 321 sRYGDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDRFykNSGIATDDIVALGLVYQF 381
                 79*************************************98999****************9 PP

>> Porin_4  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8  31.8   2.7e-25   2.4e-21       5     305 ..      13     351 ..       6     358 .. 0.78

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 2.7e-25
     Porin_4   5 laaaAgaAaAqs.......sVtlyGsidagvayvdgsatgssadgatgfdsgsrigftgsedldlGlglkasfele....agdngagtsgarqayvgls 92 
                 l ++A+aA+A++       +++lyG +d   + +d+       ++++g ++ +r+g++g +++ + l+   ++e +    ++++ +++s  r  ++gl+
  CTQ28866.1  13 L-LMASAANAAEiynkngnKLDLYGKVDGLHYFSDD-------ASEDGDQTYVRFGLKGETQITSELTGYGQWEYNiqanTSEKEGANSWTRLGFAGLK 103
                 2.56899988888***************66655553.......22333445578888887777777774444444443215556677888********* PP

     Porin_4  93 g.gfGkvtlGrqdgafdeagvdlafesgsladtgtalsgvsgsagfdsrdsnsiiyyspk.....fgGftagasyafgeddnt.....nglagsvagds 180
                   + G++++Gr++g+ +++ +  ++    l  +g++  ++++++++ +++ n+++ y+++      +G+ ++++y+ g+++n+     ++++g  +  +
  CTQ28866.1 104 FaDCGSLDYGRNYGVVYDIESWTDM----LPEFGGD--TYTQTDVYMTGRTNGVATYRNSdffglVDGLHFALQYQ-GNNENAgsgegTNNGGKRKLAR 195
                 ******************9984443....2333222..4566677779999***9999999966677********8.7777665565444455576777 PP

     Porin_4 181 ddndafglgagyafggvglavaaaysqgdneada..............dldawglgasvslggfklgasyadaendaaaaa.......adadlygvgas 258
                 ++ d+fg++ +y++   g++++aays++d + ++              + daw++ga+++ +++ l a ya+++n +++++       ++ ++++v a+
  CTQ28866.1 196 ENGDGFGISSYYDLD-MGISFGAAYSSSDRTHNQlaaarssqryangdKADAWTVGAKYDANNIYLAAMYAETRNMTFYGNdsfggiaNKTQNFEVVAQ 293
                 89***********53.57********7777777777899999999999***************************9999999***************** PP

     Porin_4 259 ytvgaltv....gaaygnydd.......agandadatsyglgatYnLskrtdlyaeya 305
                 y+++++++    ++ay + ++       + ++++  + + +g tY ++k+++ y+ y+
  CTQ28866.1 294 YQFDDFNLplrpSVAYLQSKGkdlyaysRYGDKDLVKYVDVGMTYYFNKNMSTYVDYK 351
                 ***76554333399998888866766554499999********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 3170.52
//
Query:       CTQ28867.1  [L=265]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-64  215.4   0.0    1.1e-63  215.2   0.0    1.0  1  Peptidase_M90  Glucose-regulated metallo-peptidase M90


Domain annotation for each model (and alignments):
>> Peptidase_M90  Glucose-regulated metallo-peptidase M90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.2   0.0     6e-68   1.1e-63      20     245 .]      19     243 ..       6     243 .. 0.95

  Alignments for each domain:
  == domain 1  score: 215.2 bits;  conditional E-value: 6e-68
  Peptidase_M90  20 wailearlpllaalseeekarLrelaqlflaekefegakgleltdemrlliAaqAcllilnlgldyYdglkeilvYpdefvarrevedeagvvhee 115
                    w++++ ++p+la+ls++e+++L ++a+ fl++k++ +++glelt   +  iA+  cl++l+lg+++ dg++e+l+Yp  f++++e ed+ g+vh++
     CTQ28867.1  19 WEQAL-AIPVLAHLSSTEQHKLTQMAARFLQQKRLVALQGLELTPLHQARIAMLFCLPVLELGIEWLDGFHEVLIYPAPFIVDDEWEDDIGLVHNQ 113
                    44443.69**************************************************************************************** PP

  Peptidase_M90 116 eeellGeawergpviLswedveaggeneedkenvviHEfaHkLDmedg.eadGvPplaerasaeeWaevlseeyeklrerve..akeeslidpYga 208
                    + + +G++w++gpv+L w d++ +++ ++   n+v+HE+aHkLD ++g +a GvP + +  +++ W++ l++++++++++++   +++  id+Y+a
     CTQ28867.1 114 RVVQSGQSWQQGPVVLNWLDIQDSFDASG--FNLVVHEVAHKLDTRNGdRASGVPLI-PLREVAGWEHDLHAAMNNIQDEIDlvGESAASIDAYAA 206
                    ***********************999998..*****************889****99.678999******************8645679******* PP

  Peptidase_M90 209 tnpaEFFAVasEaFFekpeklkeehpelyelLaafyr 245
                    t+paE+FAV+sE+FF++pe ++ ++p+l++ + +fyr
     CTQ28867.1 207 TDPAECFAVLSEYFFSAPELFAPRFPALWQRFCHFYR 243
                    ************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1993.08
//
Query:       CTQ28868.1  [L=129]
Description: putative mRNA endoribonuclease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-25   88.6   0.0    3.4e-25   88.4   0.0    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   1.9e-29   3.4e-25       3     120 ..      13     127 ..      11     128 .. 0.94

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 1.9e-29
                    TSTTTSSS-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGG.HHHHHHHHHHHSSSSTS-- CS
  Ribonuc_L-PSP   3 aapaaaapYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladied.faevnevyaeafdelkeaP 97 
                    +a+   ++Ys+a+k++++++vsGq+++  e+g   e d+++q+r a++nl+avLaaag++++dvV+vt F++d e+   ++ +++ e+  e   +P
     CTQ28868.1  13 QALYERNRYSPAIKSNGFLFVSGQVGSH-EDGSP-EHDLKAQVRLAFKNLNAVLAAAGCTFEDVVDVTLFVVDPESnLDAIWSILPEYWGEA-PYP 105
                    6888899*******************99.47776.***************************************99899*************.79* PP

                    EEEEEE-SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP  98 arsaveVaaLpkgakvEIeaiav 120
                      + ++V++L  g+k+EI++ia 
     CTQ28868.1 106 TLTGIGVTWLY-GFKFEIKVIAR 127
                    **********9.*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1011.14
//
Query:       CTQ28869.1  [L=306]
Description: LysR family transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-37  128.4   0.7    3.7e-37  127.7   0.7    1.3  1  LysR_substrate  LysR substrate binding domain
    7.7e-19   67.4   1.5    1.7e-18   66.3   1.5    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0073   16.1   0.4      0.018   14.9   0.4    1.6  1  HTH_IclR        IclR helix-turn-helix domain
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.017   15.0   0.0    1.2  1  Sec8_exocyst    Sec8 exocyst complex component specific domai
      0.014   15.2   0.6      0.028   14.2   0.6    1.5  1  HTH_30          PucR C-terminal helix-turn-helix domain
      0.027   13.9   0.2       0.79    9.2   0.2    2.6  2  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
       0.04   13.8   0.1       0.13   12.2   0.1    1.8  1  MarR_2          MarR family
      0.048   14.0   0.1       0.13   12.6   0.1    1.7  1  HTH_31          Helix-turn-helix domain
       0.15   12.3   0.0       0.24   11.6   0.0    1.3  1  ExbD            Biopolymer transport protein ExbD/TolR


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   0.7   1.9e-40   3.7e-37       4     207 ..      90     295 ..      88     297 .. 0.92

  Alignments for each domain:
  == domain 1  score: 127.7 bits;  conditional E-value: 1.9e-40
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSEC CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gepvs 97 
                     +rgrLr+ +p+ lar +l+p+l++f+aryP++++++ ++d  +++dl+ ++ +D+++r+g+++d++l+ar++++ ++ ++++p++  +r g+p +
      CTQ28869.1  90 PRGRLRVDVPSPLARLILVPALPAFHARYPDIQIDMGVSD--RVVDLIGDN-VDCVLRGGQITDQSLIARHVGDLQIGVYVAPSY-VERlGAPAH 180
                     89**************************************..*********.*********************************.9******** PP

                     GGGGCT..SEEEEESTTSTHHHHHHHHHHCT...TEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEE CS
  LysR_substrate  98 ledLad..eplilleegsglrdlledalrea...glkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylv 186
                     +++L++  +  + +  + +     + ++ e+   +++ + +l v++ +a l++ + GlG+  lp+++v+++ a g l+   + +++++ ++lyl+
      CTQ28869.1 181 PRELQNtdHCIVGFLSSRTSKIDPLVLCSENeriEITGNYVLAVDDGNAYLEAGLVGLGVIALPNYMVAAHQAVGALI-PLFTQWRISpMPLYLA 274
                     *****965556666655555555555666666446666****************************************.**************** PP

                     EETTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 187 yrkgrelspavrafidflrea 207
                     ++++r+ ++++r fid++ e 
      CTQ28869.1 275 FPPNRHVNAKLRVFIDWIVEL 295
                     ******************986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   1.5   8.3e-22   1.7e-18       2      59 ..       5      62 ..       4      63 .. 0.97

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 8.3e-22
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                +++r+f  v+e+gsft+AA+ L++s  +v++ i++LE++l v+L++Rt+r+l +T+ G
  CTQ28869.1  5 DAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLESRLRVRLLHRTTRKLGVTPDG 62
                789*****************************************************99 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4   8.9e-06     0.018       7      44 ..       5      42 ..       4      49 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.9e-06
                HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHH CS
    HTH_IclR  7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLve 44
                + ++a+a+  ++ +++  A+ ++++k+tv  l+q L+ 
  CTQ28869.1  5 DAMRAFARVVEAGSFTKAAQTLHMSKTTVTQLIQQLES 42
                5689********************************96 PP

>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   8.4e-06     0.017      72     133 ..      17      80 ..       5      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.4e-06
  Sec8_exocyst  72 asYskilssiqesqekvselKesleeak..kklstkkkeLkelnarsakykevieiLdaieelk 133
                   +s++k+ ++++ s+++v++l ++le+    + l+++  +L  + +  + y++vi++L  +e+ +
    CTQ28869.1  17 GSFTKAAQTLHMSKTTVTQLIQQLESRLrvRLLHRTTRKLGVTPDGAVYYERVIRLLADMEDAE 80 
                   79**********************9975225689***************************976 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.6   1.4e-05     0.028      11      47 ..      15      51 ..       7      56 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
                TTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSH CS
      HTH_30 11 nggnisatAkaLhvHrnTlryRLrrieellgldlddp 47
                + g+ +++A++Lh+++ T+++ ++++e  l + l   
  CTQ28869.1 15 EAGSFTKAAQTLHMSKTTVTQLIQQLESRLRVRLLHR 51
                56999***********************999888765 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2    0.0004      0.79      21      48 ..      10      37 ..       6      40 .. 0.83
   2 ?    1.9   0.0     0.074   1.5e+02      16      31 ..     288     303 ..     286     304 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0004
  HTH_Tnp_ISL3 21 lelllesrsvkavArqlgvSwtTVwril 48
                  ++++ e  s++ +A+ l+ S tTV   +
    CTQ28869.1 10 FARVVEAGSFTKAAQTLHMSKTTVTQLI 37
                  56777888****************8766 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.074
  HTH_Tnp_ISL3  16 leayilelllesrsvk 31 
                   + ++i+el++++ +++
    CTQ28869.1 288 FIDWIVELMQQHVPIT 303
                   789********99987 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   6.3e-05      0.13      25      48 ..      20      43 ..       5      44 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.3e-05
                HHHHHHHTSSHHHHHHHHHHHHHT CS
      MarR_2 25 gelarrlglsksavsrilkrLvaa 48
                +  a++l++sk +v+++++ L+++
  CTQ28869.1 20 TKAAQTLHMSKTTVTQLIQQLESR 43
                56799****************985 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   6.4e-05      0.13      18      59 ..      20      61 ..       7      65 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.4e-05
      HTH_31 18 eevAerlgvsestlsrlEqGrrgrpspavlealaralgldpa 59
                + +A+ l++s++t+++l q  + r + + l +  r lg++p+
  CTQ28869.1 20 TKAAQTLHMSKTTVTQLIQQLESRLRVRLLHRTTRKLGVTPD 61
                689************************************998 PP

>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00012      0.24      64     119 ..      24      80 ..      12      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
        ExbD  64 gsiyldkkav..sveelaqklkerkakppdkltvaikadkdvsygklvevldtlkkag 119
                 + ++++k +v  ++++l+ +l+ r    +++ ++ + +d+ v y+ +++ l+ +  a+
  CTQ28869.1  24 QTLHMSKTTVtqLIQQLESRLRVRLLHRTTR-KLGVTPDGAVYYERVIRLLADMEDAE 80 
                 4577888886679*****************9.*********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2256.99
//
Query:       CTQ28870.1  [L=313]
Description: conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-24   86.7   0.1    2.2e-24   85.9   0.1    1.4  1  Ldt_C     L,D-transpeptidase C-terminal domain
    1.2e-16   61.4   0.0    1.9e-16   60.8   0.0    1.2  1  YkuD      L,D-transpeptidase catalytic domain


Domain annotation for each model (and alignments):
>> Ldt_C  L,D-transpeptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.1   2.5e-28   2.2e-24       1      67 []     236     304 ..     236     304 .. 0.99

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 2.5e-28
       Ldt_C   1 PvKvsvEPdgsryvEvHqPLSrseed..dpqtvpltlskelkkfledaevdkakvkaalerrsGmPvev 67 
                 PvK+svEPdgs+++EvH+PLSr++++  ++++vpl+++++l+ f++ ++v+ a+v+++l+rrsGmPv++
  CTQ28870.1 236 PVKYSVEPDGSHWLEVHEPLSRNRAEfeSDRKVPLPMTSALRDFTQGPGVSPAQVEQTLQRRSGMPVNI 304
                 9************************999***************************************98 PP

>> YkuD  L,D-transpeptidase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   2.1e-20   1.9e-16       3     145 ..      99     231 ..      97     233 .. 0.85

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 2.1e-20
                 EEEEETTTTEEEEEEETTEEEEEEE-BEBTTS.TTSE--.-EEEEECEEEEEEE..EEGGGGT--TTSTT.EEEEEEEECCCTTCECCCCEEE-STTS- CS
        YkuD   3 yivvdlaeqrllvlyengklvlsfpvsvGgkkegdreTP.lGtfrikskvrnptwnvppsiarkeiypklrkdpeyldkknskvalgkvkfvfpngsgi 100
                  iv+++ae+rl+++   g+ v   p+ +G   + +reTP + +  + +k++ ptw vp    r+e+  +++  p  +++     ++    ++++ g+ +
  CTQ28870.1  99 GIVINVAEMRLYYYPPLGNSVEVLPIGIG---QAGRETPrNWVTAVERKQEGPTW-VPTANTRREYAKEGKTLPAMVPPGP---DNPMGLYAIYIGRLY 190
                 59*********99999*************...679***94578889999*****9.7777777777777777776666555...569999********* PP

                 EEEE.ETCSS...CTHHC.BSSSEEE-HHHHHHHHHHHHTTEEEE CS
        YkuD 101 yiHgtgapdlfergkgarrShGCirlseedakelyelvlvgtpvv 145
                 +iHgt+a+       g r S GCirl+++d+k l+++v+vgt+v 
  CTQ28870.1 191 AIHGTNANFGI----GLRVSQGCIRLRNDDIKFLFDNVPVGTRVQ 231
                 ***88888444....4588***********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2423.60
//
Query:       CTQ28871.1  [L=316]
Description: DNA-binding transcriptional activator of cysteine biosynthesis [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-41  139.7   0.3    1.3e-40  139.0   0.2    1.4  2  LysR_substrate  LysR substrate binding domain
    4.7e-13   48.9   0.0    1.1e-12   47.7   0.0    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    0.00093   18.7   0.1     0.0028   17.2   0.1    1.9  1  HTH_24          Winged helix-turn-helix DNA-binding
     0.0016   18.5   0.6     0.0075   16.4   0.3    2.3  2  HTH_28          Helix-turn-helix domain
     0.0097   15.8   0.1       0.02   14.8   0.1    1.4  1  HTH_5           Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
      0.055   12.8   0.0      0.089   12.1   0.0    1.3  1  DUF1670         Protein of unknown function (DUF1670)
      0.056   13.4   0.1       0.15   12.1   0.1    1.7  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.058   13.3   0.0       0.13   12.2   0.0    1.5  1  MarR            MarR family
       0.07   12.7   0.6       0.38   10.3   0.2    2.5  3  Sigma70_r4      Sigma-70, region 4
       0.08   13.0   0.0       0.31   11.1   0.0    2.0  2  HTH_20          Helix-turn-helix domain
      0.081   12.7   0.1       0.64    9.9   0.0    2.5  3  HTH_IclR        IclR helix-turn-helix domain
       0.11   13.1   0.1       0.57   10.8   0.1    1.9  2  Mga             Mga helix-turn-helix domain
       0.14   12.1   0.1       0.31   11.0   0.1    1.6  1  HTH_11          HTH domain
       0.16   12.2   0.0       0.51   10.6   0.0    1.9  2  UPF0122         Putative helix-turn-helix protein, YlxM / p13


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.2   4.1e+03     107     129 ..      25      47 ..      14      52 .. 0.79
   2 !  139.0   0.2     1e-43   1.3e-40       3     206 ..      90     293 ..      88     296 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.2
                     EEESTTSTHHHHHHHHHHCTTEE CS
  LysR_substrate 107 illeegsglrdlledalreaglk 129
                     +l++ +sg  ++++++ +e g++
      CTQ28871.1  25 MLYTSQSGVSRHIRELEEELGIE 47 
                     67888899999999999988886 PP

  == domain 2  score: 139.0 bits;  conditional E-value: 1e-43
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLargepv 96 
                       +g L+i++++t ary lpp++++fr+++ +v++elv+g+++e+++ll++g +D++i+++++ +d+ l a p+++ ++ l++++dhpL +  p+
      CTQ28871.1  90 DASGVLTIATTHTQARYSLPPVIKAFRELFSDVRVELVQGTPQEIEALLHNGGADIGIASERLsNDPTLAAFPWFRWHHSLLVPKDHPLTQVSPL 184
                     579******************************************************************************************** PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETT CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkg 190
                     +le++a++pli++++g + r ++++a+ ++gl p+++l++ + + ++  v+ GlG++l+ +    d+ +++    l+ ++  +   +++l  ++g
      CTQ28871.1 185 TLEAIARWPLITYRQGITGRSRIDEAFNRKGLMPDIVLSAQDSDVIKTYVELGLGVGLVAEQSG-DAREADTFTRLDTRH-LFDaNTVWLGLKRG 277
                     ***************************************************************6.777888888566666.9999********** PP

                     CCCHHHHHHHHHHHHH CS
  LysR_substrate 191 relspavrafidflre 206
                     + ++  v +fi+++ +
      CTQ28871.1 278 QLQRNYVWRFIELCNA 293
                     ************9976 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   8.4e-16   1.1e-12       1      59 [.       3      63 ..       3      64 .. 0.95

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 8.4e-16
                HHHHHHHHHHHHHS.SHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSE.EEE-HHH CS
       HTH_1  1 lrqlrlfvavaeeg.sftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrg.lrLTeaG 59
                ++ql++  + a++  ++t+ A  L++sq+ vsr+i++LEeelg ++f+R g++ l +Te G
  CTQ28871.1  3 FQQLKIIREAARQDyNLTEVANMLYTSQSGVSRHIRELEEELGIEIFIRRGKRlLGMTEPG 63
                589**********************************************888889999998 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   2.2e-06    0.0028      16      44 ..      15      43 ..       4      43 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.2e-06
      HTH_24 16 prisqreLAerlglSpstvnrrlkrLeee 44
                 + + +e+A +l  S+s v+r++++Leee
  CTQ28871.1 15 QDYNLTEVANMLYTSQSGVSRHIRELEEE 43
                446789*********************96 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   5.8e-06    0.0075       1      47 [.       4      52 ..       4      55 .. 0.87
   2 ?   -1.8   0.0       2.9   3.7e+03      15      28 ..     186     199 ..     185     200 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.8e-06
      HTH_28  1 qRleiikllaaGh.svreaArelgisrrtvyrWikryee.gGiagLvpr 47
                q l+ii+++a+++ + +e+A+ l +s++ v+r i+ +ee  Gi+    r
  CTQ28871.1  4 QQLKIIREAARQDyNLTEVANMLYTSQSGVSRHIRELEEeLGIEIFIRR 52
                569*******9999*************************8888755554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.9
      HTH_28  15 vreaArelgisrrt 28 
                   ++Ar+  i++r+
  CTQ28871.1 186 LEAIARWPLITYRQ 199
                 56899999999987 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.6e-05      0.02       4      41 ..       5      42 ..       4      43 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
                HHHHHHHHTTSSEEHHHHHHHHTS-HHHHHHHHHHHHH CS
       HTH_5  4 RlkILklLaegelcvcelaeelglsqstvShHLkkLre 41
                +lkI++  a++ +  +e a++l  sqs vS+H + L+e
  CTQ28871.1  5 QLKIIREAARQDYNLTEVANMLYTSQSGVSRHIRELEE 42
                6889999999**************************98 PP

>> DUF1670  Protein of unknown function (DUF1670)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.9e-05     0.089      93     140 ..       6      51 ..       1      67 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.9e-05
     DUF1670  93 vRlfnEAyeqealltqsDlalllgvstrtvskqvkeyqeeegivlptr 140
                 ++++ EA  q+  lt  ++a +l +s++ vs++++e+ ee gi +  r
  CTQ28871.1   6 LKIIREAARQDYNLT--EVANMLYTSQSGVSRHIRELEEELGIEIFIR 51 
                 68899******9998..59******************98888755444 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00012      0.15      25      52 ..      20      47 ..       8      60 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
                HHHHHHTTSSHHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2 25 eelAsmlGltretvsrilseLkreglis 52
                +e A+ml ++++ vsr ++eL++e  i+
  CTQ28871.1 20 TEVANMLYTSQSGVSRHIRELEEELGIE 47
                699*******************996666 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0    0.0001      0.13      16      43 ..      15      42 ..       2      43 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0001
                TTEEHHHHHHHHTS-HHHHHHHHHHHHH CS
        MarR 16 gplsvseLakklgvskstvtrvldrLek 43
                ++ +++e a++l++s+s v+r +++Le+
  CTQ28871.1 15 QDYNLTEVANMLYTSQSGVSRHIRELEE 42
                457999*********************8 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2    0.0003      0.38       8      43 ..       4      39 ..       1      44 [. 0.89
   2 ?   -2.1   0.0       2.2   2.8e+03      19      28 ..     182     191 ..     178     191 .. 0.80
   3 ?   -1.8   0.0       1.8   2.3e+03      16      28 ..     286     302 ..     284     310 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0003
                HHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHH CS
  Sigma70_r4  8 rerevlelrfgeglTleEIgerlgiSrerVrqiekr 43
                ++ ++++    ++++l E++++l  S++ V++++++
  CTQ28871.1  4 QQLKIIREAARQDYNLTEVANMLYTSQSGVSRHIRE 39
                67789999999*********************9885 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.2
                 TT--HHHHHH CS
  Sigma70_r4  19 eglTleEIge 28 
                  +lTle I++
  CTQ28871.1 182 SPLTLEAIAR 191
                 689***9995 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.8
                 HH....TTT--HHHHHH CS
  Sigma70_r4  16 rf....geglTleEIge 28 
                 rf      gl+l EI +
  CTQ28871.1 286 RFielcNAGLSLDEIKR 302
                 66666677899999865 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00024      0.31      28      52 ..      20      45 ..       7      53 .. 0.87
   2 ?   -3.5   0.0       9.1   1.2e+04      21      33 ..     291     303 ..     289     305 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
                HHHHHHHTS-HHHHHHHHHHHHH.CT CS
      HTH_20 28 selaerldlskntlsyHLrvLee.ag 52
                +e+a  l +s++ +s+H+r+Lee  g
  CTQ28871.1 20 TEVANMLYTSQSGVSRHIRELEEeLG 45
                6777788899************9555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 9.1
                 TCTTB-HHHHHHH CS
      HTH_20  21 raegltaselaer 33 
                  ++gl++ e++++
  CTQ28871.1 291 CNAGLSLDEIKRQ 303
                 5789999999875 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0005      0.64      14      45 ..      12      43 ..       6      43 .. 0.89
   2 ?   -3.5   0.0       7.7   9.9e+03      27      38 ..      72      83 ..      62      85 .. 0.67
   3 ?   -2.2   0.0         3   3.8e+03      14      28 ..     290     304 ..     286     307 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0005
                TTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHT CS
    HTH_IclR 14 eapqeltlselArrtglpkStvhRlLqtLvel 45
                +a+q+ +l+e+A+ +  + S v+R+++ L+e+
  CTQ28871.1 12 AARQDYNLTEVANMLYTSQSGVSRHIRELEEE 43
                467889***********************985 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7.7
                HHTS-HHHHHHH CS
    HTH_IclR 27 rtglpkStvhRl 38
                r+    S+v+Rl
  CTQ28871.1 72 RILNEASNVRRL 83
                444456777777 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3
                 TTBSS-BHHHHHHHH CS
    HTH_IclR  14 eapqeltlselArrt 28 
                  ++ +l+l e+ r++
  CTQ28871.1 290 LCNAGLSLDEIKRQA 304
                 5788999*9*99987 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00044      0.57      28      58 ..      14      44 ..       2      55 .. 0.84
   2 ?   -0.7   0.0       1.7   2.2e+03       8      66 ..      69     128 ..      64     135 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00044
                HSEEEHHHHHHHCT--HHHHHHHHHHHHHHC CS
         Mga 28 eeevsieelaqelyiSestlkrkikelnklL 58
                ++  +++e a+ ly S+s + r+i+el++ L
  CTQ28871.1 14 RQDYNLTEVANMLYTSQSGVSRHIRELEEEL 44
                67889***********************998 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.7
                 HHHHHHHHSHHHHHHHHHHHHSEEEHHHHHHHCT--HHHHHHHHHHHHHHCHCCT-EE.E CS
         Mga   8 llqellkeslkyqllkflfeeeevsieelaqelyiSestlkrkikelnklLkefdlel.t 66 
                 + +++l+e  + + l+ lf+++   +  +a ++   + +l  +ik +++l +++  el +
  CTQ28871.1  69 IAERILNEASNVRRLADLFTNDASGVLTIATTHTQARYSLPPVIKAFRELFSDVRVELvQ 128
                 556777777778888888888888888888888888999999999999999998888853 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00024      0.31       7      52 ..       7      54 ..       3      59 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00024
      HTH_11  7 elLleargp.isgeeLAeeLnvSrrtvrrdIkaL.eelgvpIesepgr 52
                ++++ea  +  +  e A  L  S + v r+I++L eelg++I  ++g+
  CTQ28871.1  7 KIIREAARQdYNLTEVANMLYTSQSGVSRHIRELeEELGIEIFIRRGK 54
                4555554444888999999***************66666999988886 PP

>> UPF0122  Putative helix-turn-helix protein, YlxM / p13 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0004      0.51      21      59 ..       4      42 ..       2      84 .. 0.91
   2 ?   -2.4   0.0       4.5   5.8e+03      22      39 ..     280     300 ..     258     306 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0004
     UPF0122 21 kqanylelyyadDlSlsEiAeefnvsrqavydnikrtek 59
                +q + +++   +D+ l+E+A+   +s++ v+ +i+  e+
  CTQ28871.1  4 QQLKIIREAARQDYNLTEVANMLYTSQSGVSRHIRELEE 42
                58889999999***********************99876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.5
     UPF0122  22 qanylelyy...adDlSlsEi 39 
                 q+ny+  ++   +  lSl Ei
  CTQ28871.1 280 QRNYVWRFIelcNAGLSLDEI 300
                 566655555222456777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2509.98
//
Query:       CTQ28872.1  [L=305]
Description: DNA-binding transcriptional dual regulator of nitrogen assimilation [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-31  108.5   0.4    3.9e-31  108.0   0.4    1.2  1  LysR_substrate  LysR substrate binding domain
    1.3e-21   76.3   0.1    3.2e-21   75.0   0.1    1.8  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.14   11.8   0.0    1.3  1  NMT1_2          NMT1-like family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.4   6.6e-35   3.9e-31       2     206 ..      87     289 ..      86     292 .. 0.96

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 6.6e-35
                     TTSCEEEEEEEECCCH.HHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSS CS
  LysR_substrate   2 gglrgrLrigapptla.ryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargep 95 
                     + lrg+++ig  p +a + + +pll+  r++ Pev + l+e++ ++l d+l++g+lD+a+++++ + +g++++pL++e l+lv  +d+p   g++
      CTQ28872.1  87 QTLRGQVSIGLAPGTAaSAITMPLLQTVRNELPEVMVYLQESSGTALNDKLLAGQLDMAVLYERSPVAGIVSQPLLKEDLYLVGTRDCP---GQS 178
                     7899******776555499*********************************************************************8...*** PP

                     ECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCC.HTTTEEEEEESSTTCEEEEEEEEET CS
  LysR_substrate  96 vsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdel.adgrlvalplpepplprelylvyrk 189
                     v+l ++a+ +l l ++ s+ r ++ +a+  ++l++++  e++s+ +l a++a+G+G ++lp+sa+r    a+++   + ++ p ++  l+l   +
      CTQ28872.1 179 VDLTAVAEMNLFLPRDYSAVRARVTEAFTLRRLSAKIIGEIESITTLTAAIASGMGATVLPESAARSLCgAANGWM-ARISTPSMSLSLSLNMSA 272
                     *****************************************************************99999999999.999998999********* PP

                     TCCCHHHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidflre 206
                     +  lsp+++a+ ++l++
      CTQ28872.1 273 RGSLSPQAQAVKEILLS 289
                     ***********999875 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.1   5.4e-25   3.2e-21       1      60 []       3      62 ..       3      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 5.4e-25
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr+l++fv++++ gs+t+AAe L+++qpa+s+q+++LE e++++L++Rt+rg+++TeaG+
  CTQ28872.1  3 LRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGEMDQQLLIRTKRGVTPTEAGK 62
                79********************************************************95 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.4e-05      0.14      39      69 ..     124     154 ..      89     234 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.4e-05
      NMT1_2  39 lekqaswaelrdkllagelDaahvltpapll 69 
                   +++s+++l+dkllag+lD+a+     p++
  CTQ28872.1 124 YLQESSGTALNDKLLAGQLDMAVLYERSPVA 154
                 45789*****************985555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.33
# Mc/sec: 2726.40
//
Query:       CTQ28873.1  [L=434]
Description: Salicylate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-69  232.5   0.0    7.4e-69  232.2   0.0    1.1  1  Chorismate_bind  chorismate binding enzyme


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.2   0.0   4.1e-73   7.4e-69       3     258 .]     173     424 ..     171     424 .. 0.98

  Alignments for each domain:
  == domain 1  score: 232.2 bits;  conditional E-value: 4.1e-73
                      CHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETTSEEEEECEEEEEEHSS CS
  Chorismate_bind   3 edYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsellgaSPElllkveggrrietepiaGTrargk 96 
                      e+Y+++v+++++eir+g++ kv++sr++ ++  +++d  a++   r++n+   sf+++ e++e lg+SPEl+++v g+ +++tep+aGTr r  
       CTQ28873.1 173 EAYKQQVARAVAEIRRGEYVKVIVSRAIPLP--SRIDMPATLLYGRQANTPVRSFMFRQEGREALGFSPELVMSVTGN-KVVTEPLAGTRDRMG 263
                      89*****************************..99999**************************************77.*************** PP

                      SHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESHHHH CS
  Chorismate_bind  97 tpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkkra 190
                      +pe+++a+e+ell+d+Ke  Eh + v+ + ++L+ v+ pgsv v++l++v++ ++v+hl s ++g+l+e+++++d++  lfP  + +G+Pk++a
       CTQ28873.1 264 NPEHNKAKEAELLHDSKEVLEHILSVKEAIAELEAVCLPGSVVVEDLMSVRQRGSVQHLGSGVSGQLAENKDAWDAFTVLFPSITASGIPKNAA 357
                      ********************************************************************************************** PP

                      HHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 191 meiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      +++i ++E+++R++Y+Ga+++ld d ++++a+v+R++++++++++++aGaGI+a+S+pe+E+ Et++K
       CTQ28873.1 358 LNAIMQIEKTPRELYSGAILLLD-DMRFDAALVLRSVFQDSQRCWIQAGAGIIAQSTPERELTETREK 424
                      ***********************.889**************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3675.90
//
Query:       CTQ28874.1  [L=426]
Description: Cytoplasmic transmembrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-13   49.4  89.4      4e-09   35.9  49.1    2.1  2  MFS_1     Major Facilitator Superfamily
    9.5e-05   21.1   4.3    0.00028   19.5   4.3    1.7  1  Acatn     Acetyl-coenzyme A transporter 1


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9  49.1   4.4e-13     4e-09       4     338 ..      25     365 ..      18     371 .. 0.76
   2 !   27.4  32.2   1.7e-10   1.5e-06       1     173 [.     237     413 ..     237     423 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 4.4e-13
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrf....G...rrr..vlllglllfalglllll...f.a....... 82 
                 +++  +l +++ + +lp al ++ g s + +g ++tl++l  +++ ++++++++r+    G   rr+  ++l g +++a+ l++++   + +       
  CTQ28874.1  25 VYVTQSLVSALSMQSLP-ALVRAAGGSLALAG-ATTLFML-PWALKFIWAPWIERWrlppGsqeRRSrmLILRGQVALAAILMIAAaigWfGreggfpd 120
                 56677778888888888.88888886777766.4666665.9**************8888355544434666677777777444444442325555666 PP

       MFS_1  83 sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkr 181
                 +++ +l+vl +++G  a+++  a+  + +d  ++   g ++++  +g+ lG+++g ++  +l+++ gW+++++++a +++ +   f l+  +ep++ ++
  CTQ28874.1 121 TQIVALFVLFMVAGTVASTIDIASDGFCVDQLTRAGYGWGNSVQVGGSYLGMMCGGGVFLMLSAASGWPVAMLMMAMLMMAL--SFPLWRITEPTRTAP 217
                 66778***************************************************************************99..778************ PP

       MFS_1 182 kspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrllla 280
                  ++++            +  al++++  + ll++l l++ + + l  l pl+l   l +s   l++l+++   ++g+++ l +g l++ +++ r+ll a
  CTQ28874.1 218 IPHVPA-----------LGYALRRKQARLGLLLVLMLNSGMRFVLPLLAPLLLDHGLSMS--ALGALFSGGNIAAGIAGTLAGGLLMKYTSPGRALLTA 303
                 *99999...........3556666663346777777777666667777777555555555..6666666666666666788999999************ PP

       MFS_1 281 llllllaalglallavtssavllll...vlvliGf.glgfvfpsllalasdlappeeagtas 338
                 +++  +a+l+++++ +    +lll     lv++    l+++ ++l a +++l +p +ag  +
  CTQ28874.1 304 YGVQGIALLAVVMTFMMAPGHLLLPilqCLVIVQSiSLACALVCLYATLMSLSSPLQAGVDF 365
                 *****************444444445565555555588888888888888887776666555 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 1.7e-10
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrf.Grrrvlllglllfalglllll...f..a..sslw.lllv 90 
                 lll+++l++ +r++l +++pl    d+g+s s++g l+++  ++a++a  ++G l  ++ ++ r ll+++ + +++ ll++   f  a  + l  +l  
  CTQ28874.1 237 LLLVLMLNSGMRFVLPLLAPL--LLDHGLSMSALGALFSGGNIAAGIAGTLAGGLLMKYtSPGRALLTAYGVQGIA-LLAVvmtFmmApgHLLLpILQC 332
                 578899999999998888883..5799******************9999999888777658889999999999999.3333335344443334446888 PP

       MFS_1  91 lrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllp 173
                 l ++q++  ++++   +a +  ++++ + g  + l++ + ++ ail+ ++gg++a+++g+ a+f+++++++lla+++  ++++
  CTQ28874.1 333 LVIVQSISLACALVCLYATLMSLSSPLQAGVDFTLFQCTDAAIAILAGVIGGVVAQHFGYAACFLFAGVFTLLAAWV--AYIR 413
                 888***********************************************************************775..4443 PP

>> Acatn  Acetyl-coenzyme A transporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   4.3   3.1e-08   0.00028       5     179 ..      22     184 ..      18     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.1e-08
       Acatn   5 LvvLyllqGiPvGLafgtiPflLkslaketsftelgvfslatyPyslkilWsPivDslysk...kiGrrrsWiiPvqlvsgilllvlglaiskglifeg 100
                 +  +y+ q +   L++ ++P l+++     s +  g  +l  +P++lk +W+P ++ +      +  r r  i+  q++ + +l+ ++ ai        
  CTQ28874.1  22 IAGVYVTQSLVSALSMQSLPALVRA--AGGSLALAGATTLFMLPWALKFIWAPWIERWRLPpgsQERRSRMLILRGQVALAAILM-IAAAI-------- 109
                 5568999***99***********99..667888889999999**************99765211333445566666766665555.22222........ PP

       Acatn 101 vddafhgeasekvlkvnilsLtlvflvLvllcatqDiavDgWaltiLskkslsyastaqtvGlnlGyflsftvflslns 179
                    +f  + +    +++i++L ++f+v   + +t Dia Dg+ ++ L++   ++    q+ G  lG +    vfl+l+ 
  CTQ28874.1 110 --GWFG-R-EGGFPDTQIVALFVLFMVAGTVASTIDIASDGFCVDQLTRAGYGWGNSVQVGGSYLGMMCGGGVFLMLSA 184
                 ..3563.3.3577899**********************************************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.35
# Mc/sec: 3606.28
//
Query:       CTQ28875.1  [L=600]
Description: ABC-transporter protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-29  103.6   0.0    2.1e-29  102.8   0.0    1.4  1  ABC_tran      ABC transporter
    1.8e-07   31.1   7.2    4.4e-07   29.8   6.9    1.8  1  ABC_membrane  ABC transporter transmembrane region
    3.2e-07   30.0   0.0    2.1e-05   24.1   0.0    2.3  2  SMC_N         RecF/RecN/SMC N terminal domain
     0.0013   18.0   0.0     0.0028   17.0   0.0    1.5  1  Zeta_toxin    Zeta toxin
     0.0057   17.0   0.2      0.022   15.1   0.2    2.1  1  AAA_16        AAA ATPase domain
     0.0081   15.8   0.0      0.014   15.0   0.0    1.4  1  SRP54         SRP54-type protein, GTPase domain
     0.0089   15.9   0.0      0.017   15.0   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.018   14.9   0.0          2    8.1   0.0    2.3  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
      0.021   15.1   0.0      0.082   13.2   0.0    2.0  1  AAA_22        AAA domain
       0.03   14.5   0.5       0.87    9.7   0.0    2.8  2  AAA_33        AAA domain
      0.043   13.5   0.4       0.32   10.7   0.0    2.3  2  AAA_30        AAA domain
      0.082   13.5   0.0       0.22   12.1   0.0    1.8  1  AAA_18        AAA domain
       0.11   12.6   0.3       0.52   10.4   0.3    2.2  1  CytB6-F_Fe-S  Cytochrome B6-F complex Fe-S subunit
        0.2   12.1   0.4        1.7    9.0   0.1    2.7  2  AAA           ATPase family associated with various cellular 
        1.5    9.3   6.7       0.43   11.1   1.7    2.5  2  DUF2061       Predicted membrane protein (DUF2061)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.0   1.7e-32   2.1e-29       1     137 []     361     510 ..     361     510 .. 0.86

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 1.7e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................esde 83 
                 l++vsl++ + ++ a+vG +GaGK+t+ kll++  +p++G+i + g d+++ + e+l++ i+v++q+  lf+++ +  n                ++ +
  CTQ28875.1 361 LNHVSLTFPAASMSALVGASGAGKTTVTKLLMRYADPQQGQISIGGVDIRRLTPEQLNSLISVVFQDVWLFDDT-LLANiriarpqatrqeveeaARAA 458
                 789**********************************************************************9.666669999997775553333333 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++ +++s+l +     t++++ + +LSgG++qr+++arallk++++++lDEpta
  CTQ28875.1 459 QCLEFISRLPQ--GWLTPMGEMGGQLSGGERQRISIARALLKNAPVVILDEPTA 510
                 33334444433..4577888888*****************************97 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   6.9   3.7e-10   4.4e-07       5     264 ..      34     291 ..      30     301 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 3.7e-10
                   HHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHH CS
  ABC_membrane   5 illailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnv.tgerlskrlrrklfkkilrqpmsffdtnsvGel 100
                   +l+++la +++ +   +l  i+d ll  gd+ +  l  +++++ +++++ ++l +    + +     +++++lr +l + + r p++  ++ ++Ge+
    CTQ28875.1  34 MLALLLAAFMQGIAFACLYPIIDALLR-GDAPQ--LLNWAMAFSVAAIVTLVLRWYGLGFEYRgHLAQATHELRLRLGEQLRRVPLEKLQRGRAGEM 127
                   67778888888888888999******9.99999..999*****999999999877666665444788899*************************** PP

                   HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTT CS
  ABC_membrane 101 lsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafg 197
                   +++l   v+   + +     +++  ++t +++ +  +++ w+l lv+l i+pl++++ +++ + +++  ++  +a  ++s  + E  +g+ +++  g
    CTQ28875.1 128 NALLLGSVDENLNYVIAIANILLLTIVTPLTASLATLWIDWRLGLVMLLIFPLLVPFYYWRRPAMRRQMQTLGEAHQRLSGDIVEFAQGMMVLRTCG 224
                   ********999999999999*********************************************************************99999988 PP

                   THHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHH CS
  ABC_membrane 198 reeyflekfekaleeakkagikkaia.nglligitqllgllsyalalwfGttlvisgelsvgdlvvfl 264
                     +   +     ++  ++ + +  +  +g+++ i+ ++ l +++++ + G+++v +g+l++  l++ +
    CTQ28875.1 225 SDADKSRALLAHFNALENLQTRTHRQgAGATMLIASVVELGLQVVV-LSGIVWVVTGTLNLAFLIAAV 291
                   8765555444444444444444444414555555555555555555.668888888877766655555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.048        57      23      41 ..     370     388 ..     359     394 .. 0.81
   2 !   24.1   0.0   1.8e-08   2.1e-05     136     211 ..     481     552 ..     430     560 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.048
                 TSSEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnll 41 
                 + s++a+vG+ G+GK+ ++
  CTQ28875.1 370 AASMSALVGASGAGKTTVT 388
                 45799***********986 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 1.8e-08
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                 +LSgGe++ +++a        k ap+++lDe  aaLD +   +v + +++  +n  +i+i++r  +++ a +++ +
  CTQ28875.1 481 QLSGGERQRISIAR----ALLKNAPVVILDEPTAALDIESELAVQKAIDNLVHNRTVIIIAHRLSTIAGAGNILVI 552
                 8******9887764....46799*****************************************999998777655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.3e-06    0.0028      20      60 ..     375     415 ..     367     438 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.3e-06
  Zeta_toxin  20 llgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPe 60 
                  l+G++GAGK+++ +ll ++ ++q++ + + + d+R+l Pe
  CTQ28875.1 375 ALVGASGAGKTTVTKLLMRYADPQQGQISIGGVDIRRLTPE 415
                 589************************************98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   1.9e-05     0.022      25     142 ..     372     506 ..     359     568 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdql...esaipy...salaqalareellrqllde.aesaeleawrekleeala.......... 106
                 ++  l+G+sG GK+++ + l+r++  + g    g  d     +        s +  ++    l+ + l +  + a ++a r++ eea++          
  CTQ28875.1 372 SMSALVGASGAGKTTVTKLLMRYADPQQGQISIGGVDIRrltP----EqlnSLISVVFQDVWLFDDTLLAnIRIARPQATRQEVEEAARaaqclefisr 466
                 56679*****************999994444333333321110....1111111111211122222222212222222222222222225555556666 PP

      AAA_16 107 .......avpelagaea..srllellkrllallsrderplvlvlD 142
                        + +e+ g+++  +r +  ++r+l  l++ +   v++lD
  CTQ28875.1 467 lpqgwltPMGEMGGQLSggERQRISIARAL--LKN-A--PVVILD 506
                 666666655555555554444444444444..333.2..244454 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.2e-05     0.014       3      52 ..     373     421 ..     371     447 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
                 EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHH CS
       SRP54   3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktla 52 
                 + +lvG  GaGKTt +  L ++   ++ ++ +  +D+ R    eQL+ l 
  CTQ28875.1 373 MSALVGASGAGKTTVTKLLMRYADPQQGQISIGGVDIRRLT-PEQLNSLI 421
                 5689**********999999999999**********98875.68887765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.4e-05     0.017      66     131 ..     340     403 ..     308     406 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.4e-05
                  HHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  66 eelkeelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  e++  ++ ++ y+     + ++++l++++  +   ++s+lvG SG+GK+t+ + l+  ++ + g++s
   CTQ28875.1 340 ERYDIRFDNVSYRYE---EGDGHALNHVSLTFPAaSMSALVGASGAGKTTVTKLLMRYADPQQGQIS 403
                  555555555544443...3456677777777766699******************998888888887 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0017         2       2      24 ..     374     396 ..     373     422 .. 0.74
   2 ?    4.4   0.0     0.023        27     238     272 ..     483     514 ..     473     544 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0017
      AAA_21   2 nvliGpNgsGKSnLLdaldllar 24 
                  +l+G+ g+GK+++ ++l   a+
  CTQ28875.1 374 SALVGASGAGKTTVTKLLMRYAD 396
                 68**************9955544 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.023
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHP 272
                 S G ++ + ++ all  +   +++++DEp + L+ 
  CTQ28875.1 483 SGGERQRISIARALLKNA---PVVILDEPTAALDI 514
                 666666655555555555...**********9986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.9e-05     0.082       5      32 ..     371     398 ..     370     459 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.9e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldee 32 
                 a++ +++G sG+GKTt+ + l++ +d +
  CTQ28875.1 371 ASMSALVGASGAGKTTVTKLLMRYADPQ 398
                 57889***************99887654 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00073      0.87       4      21 ..     376     393 ..     373     403 .. 0.89
   2 ?    1.7   0.1      0.22   2.6e+02      16      85 ..     493     572 ..     491     587 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00073
      AAA_33   4 lvGlpGsGKstlaerllk 21 
                 lvG++G+GK+t+ + l++
  CTQ28875.1 376 LVGASGAGKTTVTKLLMR 393
                 89**********999886 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.22
      AAA_33  16 aerllkklgavllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildat..........nlsrrer 85 
                 a+ llk+ ++v+l+++t+   ++ +   +k   + v +r+  i++ ++   + ag+ +++  +          +ls++ r
  CTQ28875.1 493 ARALLKNAPVVILDEPTAALDIESELAVQKAIDNLVHNRTVIIIAHRLSTIAGAGNILVIEEGqvveqgthaqLLSHHGR 572
                 789999999********999999866666665566666666666677766677776666655544444455555555555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00027      0.32      19      46 ..     372     399 ..     362     428 .. 0.81
   2 ?   -0.3   0.1      0.63   7.6e+02      88     112 ..     546     570 ..     493     593 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00027
      AAA_30  19 rvavltGpAGtGKttalkalreaweaag 46 
                  +++l+G+ G+GKtt+ k l + ++ ++
  CTQ28875.1 372 SMSALVGASGAGKTTVTKLLMRYADPQQ 399
                 5899**************9966555443 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.63
      AAA_30  88 pgtllivDEagmvdtkqlaallkaa 112
                 +g++l++ E  +v + + a+ll++ 
  CTQ28875.1 546 AGNILVIEEGQVVEQGTHAQLLSHH 570
                 3366666666666666666666544 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00019      0.22       3      21 ..     376     394 ..     375     477 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00019
      AAA_18   3 ltGtpGvGKttlakeLskr 21 
                 l G++G+GKtt++k L + 
  CTQ28875.1 376 LVGASGAGKTTVTKLLMRY 394
                 89**************654 PP

>> CytB6-F_Fe-S  Cytochrome B6-F complex Fe-S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00043      0.52       6      32 ..      29      55 ..      28      56 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00043
  CytB6-F_Fe-S  6 msrRqllNlllvGaialtaaaaLyPvv 32
                  m rR++l lll++ + + a a LyP +
    CTQ28875.1 29 MLRRSMLALLLAAFMQGIAFACLYPII 55
                  88***********************86 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.1   2.5e+03     103     125 ..     302     325 ..     289     331 .. 0.79
   2 ?    9.0   0.1    0.0015       1.7       3      37 ..     376     412 ..     374     552 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.1
                 EEEEEEESSGGGSTHHHHS.TTSS CS
         AAA 103 vivigatnrpdkldpallr.gRfd 125
                  ++i  t  ++ + +al r +Rf 
  CTQ28875.1 302 AMFISYTSVVELIASALQRiERFM 325
                 588999999999999999888875 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0015
                 EESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSS CS
         AAA   3 lyGppGtGKTllakavakelg..vefleisgsellsk 37 
                 l+G  G GKT++ k +++ ++  +  ++i g +++  
  CTQ28875.1 376 LVGASGAGKTTVTKLLMRYADpqQGQISIGGVDIRRL 412
                 89*****************962233455555555522 PP

>> DUF2061  Predicted membrane protein (DUF2061)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2         2   2.3e+03       9      21 ..      70      82 ..      66      84 .. 0.71
   2 ?   11.1   1.7   0.00036      0.43      13      40 ..     269     296 ..     265     299 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2
     DUF2061  9 vihtvvtflvayl 21
                +++++v+ +v+++
  CTQ28875.1 70 AMAFSVAAIVTLV 82
                4677777777776 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00036
     DUF2061  13 vvtflvaylltgslalAgaialvEpvvk 40 
                 vv  ++++++tg l lA+ ia v +++ 
  CTQ28875.1 269 VVLSGIVWVVTGTLNLAFLIAAVAMIMR 296
                 66778******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 4412.92
//
Query:       CTQ28876.1  [L=570]
Description: Permease and ATP-binding protein of yersiniabactin-iron ABC transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-32  112.6   0.0    3.8e-32  111.7   0.0    1.5  1  ABC_tran         ABC transporter
    2.3e-21   76.6   0.9    3.5e-21   76.1   0.9    1.3  1  ABC_membrane     ABC transporter transmembrane region
    3.4e-06   27.5   0.3    9.3e-06   26.1   0.3    1.7  1  AAA_16           AAA ATPase domain
    4.1e-06   26.4   0.0    0.00034   20.1   0.0    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
    7.3e-05   22.7   0.0    0.00014   21.8   0.0    1.4  1  RsgA_GTPase      RsgA GTPase
    0.00013   22.3   0.0     0.0014   18.9   0.0    2.3  1  AAA_22           AAA domain
    0.00068   20.1   0.0      0.011   16.2   0.0    2.3  1  AAA              ATPase family associated with various cellul
    0.00086   18.6   0.3     0.0049   16.2   0.0    2.3  3  Zeta_toxin       Zeta toxin
     0.0021   17.8   0.0     0.0067   16.2   0.0    1.8  1  AAA_30           AAA domain
     0.0049   17.0   0.0      0.016   15.3   0.0    1.9  1  AAA_33           AAA domain
     0.0053   16.6   0.0       0.11   12.3   0.0    2.2  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0071   15.9   3.8      0.062   12.9   0.0    2.8  3  AAA_25           AAA domain
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.044   13.5   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
       0.02   15.4   0.0      0.042   14.4   0.0    1.5  1  AAA_18           AAA domain
      0.028   14.2   0.0       0.29   10.9   0.0    2.2  2  IstB_IS21        IstB-like ATP binding protein
      0.035   13.8   0.0      0.078   12.7   0.0    1.7  1  AAA_24           AAA domain
      0.052   13.3   0.0      0.096   12.4   0.0    1.4  1  Cytidylate_kin   Cytidylate kinase
      0.088   12.5   0.1        1.4    8.6   0.0    2.3  2  Sigma54_activat  Sigma-54 interaction domain
      0.096   12.7   0.0       0.36   10.8   0.0    2.0  2  AAA_5            AAA domain (dynein-related subfamily)
       0.12   12.4   0.2       0.53   10.3   0.0    2.0  2  DUF1995          Domain of unknown function (DUF1995)
       0.13   11.0   8.0      0.047   12.5   0.5    2.3  2  DUF2207          Predicted membrane protein (DUF2207)
       0.13   12.3   0.0        2.8    8.0   0.0    2.9  3  AAA_14           AAA domain
       0.16   11.5   0.0       0.32   10.5   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
       0.17   11.1   0.0        1.9    7.6   0.0    2.4  3  NB-ARC           NB-ARC domain
       0.21   11.7   0.0        0.8    9.8   0.0    2.0  2  MMR_HSR1         50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0   5.2e-35   3.8e-32       1     137 []     330     479 ..     330     479 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 5.2e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................esde 83 
                 l++vs+++ +g++va+vG++GaGKSt+++ll++  +p++G+i++ g dl++ ++  l k++++++q+++lf ++ +++n                ++ +
  CTQ28876.1 330 LQEVSFHVPAGQIVALVGPSGAGKSTVARLLLRYADPDKGHIRIGGVDLRDMQTDTLMKQLSFVFQDNFLFADT-IANNirlgapdtpleaviaaARVA 427
                 689***********************************************************************.99999************9988888 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++++++s l   +  +t+v++++  LSgGq+qr+ +arall+++++l+lDE+ta
  CTQ28876.1 428 QAHDFISALPEGY--NTRVGERGVFLSGGQRQRITIARALLQDRPILVLDEATA 479
                 999****999888..9************************************96 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.9   4.9e-24   3.5e-21      46     253 ..      39     248 ..      12     269 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 4.9e-24
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHH CS
  ABC_membrane  46 lllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwk 142
                    +++++++ f+l l  + + ++++ +l++ lr++l +k l++p +  +++ +G++   + +dv +l+ +++++  l  +++++ +++++++f+l w+
    CTQ28876.1  39 GVIGCVVLTFVLRLQAFNTSHYAAFHLENILRSRLARKALQLPPGVLQQMGSGSVAKVMLDDVKSLHIFVADSTPLYARAIIMPLATIVILFWLDWR 135
                   4556666666666555666699*************************************************************************** PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHH...HHHH.HHHHHHHHHHHHHHHHHH CS
  ABC_membrane 143 ltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleea...kkag.ikkaianglligitqllg 235
                   l++++l++l    +v ++  ++++++ +++ ka++++s+ ++E ++++ +V+ f   ++   +++ alee+   +k + +k+ ++++++++i++ l+
    CTQ28876.1 136 LAIATLGVLAFGSVVLVLARQRSEDMAQRYHKAREQVSAAVIEFVQAMPVVRTFDSGSTSFLRYQRALEEWvdvLKTWyRKAGFSARFSFSILNPLP 232
                   *******************************************************************998633334441566678889999999888 PP

                   HHHHHHHHHHHHHHHHTT CS
  ABC_membrane 236 llsyalalwfGttlvisg 253
                   +l++++  w G+ l + g
    CTQ28876.1 233 TLFVLI--WSGYGLLHYG 248
                   887765..5566555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.3   1.3e-08   9.3e-06      21     162 ..     339     497 ..     325     505 .. 0.59

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.3e-08
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql..esaipysalaqalareellrqlldeaesaeleawrekleeala.......avpe 110
                 +g  ++v l+G+sG GKs+++r llr++  d+g+   g  d    ++++ + +l  ++  + l+++  ++     l+a ++ le+++a           
  CTQ28876.1 339 AG--QIVALVGPSGAGKSTVARLLLRYADPDKGHIRIGGVDLRdmQTDTLMKQLSFVFQDNFLFADTIANNI--RLGAPDTPLEAVIAaarvaqaH--- 430
                 33..89*************************88884444444435666777777777777777777776622..2444444444444433333220... PP

      AAA_16 111 lagaea.......................srllellkrllallsrderplvlvlDdlqwade..aslqllaaLlrll 162
                                              +r + +++r+l  l + +r  +lvlD++  + +    ++l++aL++++
  CTQ28876.1 431 -----DfisalpegyntrvgergvflsggQRQRITIARAL--L-Q-DR-PILVLDEATAFADpeNEAALIKALAAAM 497
                 .....23334444444444444555544455555555555..2.2.34.7999999886555334444477777665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.038        27      25      41 ..     341     357 ..     330     372 .. 0.87
   2 !   20.1   0.0   4.7e-07   0.00034     135     209 ..     414     519 ..     360     525 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.038
                 SEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnll 41 
                 ++ a+vGp G+GKs + 
  CTQ28876.1 341 QIVALVGPSGAGKSTVA 357
                 6789**********985 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 4.7e-07
                 T...................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SS CS
                 x...................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e...................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislr 198
                 +                                    LSgG+++ + +    A    + +p+ +lDe  a  D +n +++ + l ++     +i++++r
  CTQ28876.1 414 DtpleaviaaarvaqahdfisalpegyntrvgergvFLSGGQRQRITI----ARALLQDRPILVLDEATAFADPENEAALIKALAAAMRGRTVIMVAHR 508
                 05555555555555555555555555555555555589****996655....45567999*************************************** PP

                 HHHCCC-SCEE CS
                 xxxxxxxxxxx RF
       SMC_N 199 eemlekadklv 209
                   m+++ad ++
  CTQ28876.1 509 LSMVTQADVIL 519
                 *******9875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.9e-07   0.00014      47     124 ..     289     365 ..     253     391 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.9e-07
                  -EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  47 iepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpele 124
                  i  v+++  + l +++++ +e + ++e++  ++ + +a+t+++l+e++ ++   ++++lvG+SG+GKSt+   ll  ++
   CTQ28876.1 289 IYQVLAMPELSLPQSDQQPQEASITFEQV--SFHYPQARTGAALQEVSFHVPAgQIVALVGPSGAGKSTVARLLLRYAD 365
                  45555555556666666455555555554..6777788999********99877****************999887655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     2e-06    0.0014       6      38 ..     341     405 ..     339     512 .. 0.55

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee................................e 38 
                 +i++++G+sG+GK+t++r ll+ +d ++ + +                                +
  CTQ28876.1 341 QIVALVGPSGAGKSTVARLLLRYADPDKGHIRiggvdlrdmqtdtlmkqlsfvfqdnflfadtiA 405
                 7999*****************99988877777777777775444444444444444444433330 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-05     0.011       2     114 ..     344     511 ..     343     521 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.5e-05
                 EEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSS............................................................. CS
         AAA   2 llyGppGtGKTllakavakelg..vefleisgsellsk............................................................. 37 
                  l+Gp G GK+++a+ + + ++     ++i g +l+++                                                             
  CTQ28876.1 344 ALVGPSGAGKSTVARLLLRYADpdKGHIRIGGVDLRDMqtdtlmkqlsfvfqdnflfadtiannirlgapdtpleaviaaarvaqahdfisalpegynt 442
                 69******************9533446777777777665555555688888888888888888888888888888888888888888888888888888 PP

                 ......STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGG CS
         AAA  38 ......yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdk 114
                       ++  + ++ r ++++a  +    il++DE+ a+a  +      +e  ++++L +++ g +       vi++++r ++
  CTQ28876.1 443 rvgergVFLSGGQRQRITIARALLQD-RPILVLDEATAFADPE------NEAALIKALAAAMRGRT-------VIMVAHRLSM 511
                 88877766667777777776664444.6888888888887777......55555666665555553.......3555555555 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.9e-06    0.0049      18      57 ..     342     381 ..     331     390 .. 0.92
   2 ?   -2.2   0.0         3   2.1e+03     102     130 ..     478     506 ..     466     509 .. 0.77
   3 ?   -3.3   0.0       6.3   4.5e+03     135     165 ..     536     567 ..     534     569 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.9e-06
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrldpDdlRel 57 
                 ++ l+G +GAGKs++a+ll ++ +++++ +r+ + dlR +
  CTQ28876.1 342 IVALVGPSGAGKSTVARLLLRYADPDKGHIRIGGVDLRDM 381
                 78899****************************9999976 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3
  Zeta_toxin 102 gtlrspdvvkklaealkkaGYevevvvva 130
                 +++++p++ + l++al++a +   v++va
  CTQ28876.1 478 TAFADPENEAALIKALAAAMRGRTVIMVA 506
                 78999999999999999765555555555 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 6.3
  Zeta_toxin 135 lSrlgvldRyeeevaeg.Rlvpkeehdeafeg 165
                 l++ g+++R ++  +++  +vp  +++e++e+
  CTQ28876.1 536 LAQGGLYQRLWQHYQQAqHWVPGGTQEEVVEN 567
                 67889999999995554499999999998876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   9.4e-06    0.0067      19     122 ..     341     505 ..     331     518 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.4e-06
      AAA_30  19 rvavltGpAGtGKttalkal.reaweaag.grviglAptgkaAkvLaeelgi.......eastiakllkrlk........................... 81 
                 ++++l+Gp G+GK+t+ + l r a  ++g  r+ g+     + ++L ++l +        a+tia+ ++  +                           
  CTQ28876.1 341 QIVALVGPSGAGKSTVARLLlRYADPDKGhIRIGGVDLRDMQTDTLMKQLSFvfqdnflFADTIANNIRLGApdtpleaviaaarvaqahdfisalpeg 439
                 5899***************956666666557788888888888888887775555555578888887744448888888888888888888888999** PP

      AAA_30  82 ......................grarlepgtllivDEagmv.dtkqlaallkaaeka..gakvilv 122
                                       +ra l+++ +l+ DEa    d ++ aal+ka+++a  g +vi+v
  CTQ28876.1 440 yntrvgergvflsggqrqritiARALLQDRPILVLDEATAFaDPENEAALIKALAAAmrGRTVIMV 505
                 ********************9988899999*******98764777778888887774336777777 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.3e-05     0.016       2      22 ..     343     363 ..     342     419 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.3e-05
      AAA_33   2 vllvGlpGsGKstlaerllkk 22 
                 v lvG++G+GKst+a+ ll+ 
  CTQ28876.1 343 VALVGPSGAGKSTVARLLLRY 363
                 789*************99875 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00015      0.11       1      34 [.     342     376 ..     342     415 .. 0.65
   2 ?    1.9   0.0      0.22   1.6e+02     238     297 ..     452     507 ..     434     512 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarl.drdvegltd 34 
                 + +l+Gp g+GKS++ ++l   a+   ++++ ++ 
  CTQ28876.1 342 IVALVGPSGAGKSTVARLLLRYADPdKGHIRIGGV 376
                 579****************8777644333333333 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.22
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 S G+++ + ++ all+++   ++l++DE  ++ +P+  + l++ l ++ r g  vi++ H
  CTQ28876.1 452 SGGQRQRITIARALLQDR---PILVLDEATAFADPENEAALIKALAAAMR-GRTVIMVAH 507
                 777777767777777777...*******9999999999999999999999.888888766 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.3     0.086        62      50     117 ..     131     189 ..     129     215 .. 0.65
   2 !   12.9   0.0   8.6e-05     0.062      29      50 ..     336     357 ..     324     370 .. 0.91
   3 ?   -3.0   0.0       6.3   4.5e+03     147     174 ..     473     495 ..     458     507 .. 0.48

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.086
      AAA_25  50 aldlalava.tGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLf 117
                  ld+ la+a +G   +g        V++v a ++ +++++R+++++e++   a   +++++ v  ++ f
  CTQ28876.1 131 WLDWRLAIAtLGVLAFG-------SVVLVLARQRSEDMAQRYHKAREQV-SAAVIEFVQAMPV--VRTF 189
                 57888888877777766.......788888888888************9.3455555554433..3333 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 8.6e-05
      AAA_25  29 llpagelallaGapgtGKttla 50 
                 ++pag +++l+G++g+GK+t+a
  CTQ28876.1 336 HVPAGQIVALVGPSGAGKSTVA 357
                 78******************98 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 6.3
      AAA_25 147 viDplsralggdensnsdvgalvealer 174
                 v+D  +++ + +++     +al++al+ 
  CTQ28876.1 473 VLDEATAFADPENE-----AALIKALAA 495
                 55554444433222.....333333333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.1e-05     0.044      17      38 ..     335     356 ..     328     359 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.1e-05
      AAA_29  17 ieidlkg.atlltGpsGsGKSTl 38 
                 +++  +g ++ l+GpsG+GKST+
  CTQ28876.1 335 FHVP-AGqIVALVGPSGAGKSTV 356
                 5554.55699************6 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   5.9e-05     0.042       1      31 [.     343     381 ..     343     410 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.9e-05
      AAA_18   1 IlltGtpGvGKttlakeL....skrlgf........gvnlrdv 31 
                 ++l G++G+GK+t+a+ L                  gv lrd+
  CTQ28876.1 343 VALVGPSGAGKSTVARLLlryaD----PdkghirigGVDLRDM 381
                 6899**************43330....1333335565555555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0004      0.29      19      65 ..     314     358 ..     302     372 .. 0.76
   2 ?    0.2   0.0      0.74   5.3e+02     106     151 ..     466     511 ..     453     519 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0004
   IstB_IS21  19 ledidfraarsldkrkvkeLatlsf.iekkenivllGpsGvGKshlai 65 
                 +e++ f+     ++r+ ++L++ sf + + + ++l+GpsG+GKs +a 
  CTQ28876.1 314 FEQVSFHYP---QARTGAALQEVSFhVPAGQIVALVGPSGAGKSTVAR 358
                 555555554...345555777777757899999***********9885 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.74
   IstB_IS21 106 llkvdllilDdlgllpldqaeaellfeviekryerrsiiitsnlpf 151
                 l+   +l+lD+       ++ea+l+  + ++  +r+ i+++  l++
  CTQ28876.1 466 LQDRPILVLDEATAFADPENEAALIKALAAAMRGRTVIMVAHRLSM 511
                 44557999**998887777777777777777778888888777665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00011     0.078       3      58 ..     341     392 ..     339     489 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevve 58 
                 + ++++Gpsg+GK+t+a+ l     + d +kG  ++ + ++ d++  +++++++ +
  CTQ28876.1 341 QIVALVGPSGAGKSTVARLL---LRYADPDKGHIRIGGVDLRDMQ-TDTLMKQLSF 392
                 5689***************9...8888999999999998888874.4444444444 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00013     0.096       1      18 [.     343     360 ..     343     365 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
                     EEEE-STTSSHHHHHHHH CS
  Cytidylate_kin   1 iaiDGPagsGKssvaral 18 
                     +a+ GP+g+GKs+var+l
      CTQ28876.1 343 VALVGPSGAGKSTVARLL 360
                     6899************98 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0     0.002       1.4      13      50 ..     331     368 ..     322     395 .. 0.76
   2 ?    1.2   0.0      0.37   2.6e+02      90     130 ..     494     534 ..     473     539 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.002
                      HHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTT CS
  Sigma54_activat  13 eqikkvaktdlsvlitGesGtGKellaraiheaskrke 50 
                      ++++  ++    v ++G sG+GK+++ar++ +  + ++
       CTQ28876.1 331 QEVSFHVPAGQIVALVGPSGAGKSTVARLLLRYADPDK 368
                      555555666677899*************9988666554 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.37
                      HHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSE CS
  Sigma54_activat  90 ekadgGtlfLDeigelplelQekLlrvlqegevervGsske 130
                       +a  G   +   ++l++ +Q+ ++ +  +g+++ +G++++
       CTQ28876.1 494 AAAMRGRTVIMVAHRLSMVTQADVILLFSDGQLREMGNHTQ 534
                      556666666666799**********************9876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00051      0.36       2      22 ..     343     363 ..     342     402 .. 0.87
   2 ?   -2.4   0.0       6.1   4.4e+03      15     121 ..     489     507 ..     461     516 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00051
                 EEEE--SSSSHHHHHHHGGGG CS
       AAA_5   2 vlLvGppGtgKselaerlaaa 22 
                 v LvGp+G gKs++a+ l++ 
  CTQ28876.1 343 VALVGPSGAGKSTVARLLLRY 363
                 679*************99875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.1
                 HHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---...... CS
       AAA_5  15 laerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggelvkaknddller 113
                 l++ laaa++                                                                                         
  CTQ28876.1 489 LIKALAAAMRG---------------------------------------------------------------------------------------- 499
                 23333333333........................................................................................ PP

                 -EEEEEES CS
       AAA_5 114 frviatan 121
                  +vi+ a+
  CTQ28876.1 500 RTVIMVAH 507
                 44444443 PP

>> DUF1995  Domain of unknown function (DUF1995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.4     1e+03      50     129 ..      77     194 ..      58     222 .. 0.56
   2 ?   10.3   0.0   0.00074      0.53      81     136 ..     426     527 ..     296     536 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.4
     DUF1995  50 alallgklv.elgsgrrvkivfpdageaalarr..........................ed..........dvfvvvaPsp.seleavealaeaag..d 108
                 al+l   +  ++gsg   k+++ d + + +  +                           +          +v++v+a +  +++   +++++a +  +
  CTQ28876.1  77 ALQLPPGVLqQMGSGSVAKVMLDDVKSLHIFVAdstplyaraiimplativilfwldwrLAiatlgvlafgSVVLVLARQRsEDM--AQRYHKAREqvS 173
                 4444444453478888888888888888888774444444444444444444444444400444444444366666665554222..223333322224 PP

     DUF1995 109 rpvvllNprledvdevglgla 129
                   v+ +   +  v++ ++g  
  CTQ28876.1 174 AAVIEFVQAMPVVRTFDSGST 194
                 666666666666666665555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00074
     DUF1995  81 r................................................eddvfvvvaPspseleavealaeaagdrpvvllNprledvdevglglaar 131
                                                                  + ++ +++ P+ +e+  ++ala+a+ +r v+++ +rl+ v ++++ l ++
  CTQ28876.1 426 VaqahdfisalpegyntrvgergvflsggqrqritiarallqdrpilvlD-EATAFADPE-NEAALIKALAAAMRGRTVIMVAHRLSMVTQADVILLFS 522
                 13334444444444444444444444444444444444455444444322.888888887.58899*************************99988877 PP

     DUF1995 132 grqlr 136
                 + qlr
  CTQ28876.1 523 DGQLR 527
                 55555 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   1.7     0.099        71     386     448 ..     117     168 ..       3     175 .. 0.77
   2 ?   12.5   0.5   6.5e-05     0.047     350     430 ..     196     271 ..     185     292 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.099
     DUF2207 386 lglgliilglilillallllvlllvfllilllillliaiivlllfsrllgrrteeGaellakw 448
                  +++  ++ +++++++          l+i +l++l ++++vl+l++     r+e+ a+ ++k+
  CTQ28876.1 117 RAIIMPLATIVILFWL-------DWRLAIATLGVLAFGSVVLVLARQ----RSEDMAQRYHKA 168
                 3344444444444444.......888888888888888888888755....555555555553 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 6.5e-05
     DUF2207 350 akkfkkalkkwksavkkkergyfdkkgkkklkklsalglgliilglilillallllvlllvfllilllillliaiivlllf 430
                   ++++al++w + +k     +++k+g + ++++s+l+ + ++++li++ ++ll +++ + f+++++++ll  +++ ++++
  CTQ28876.1 196 FLRYQRALEEWVDVLKT----WYRKAGFSARFSFSILNPLPTLFVLIWSGYGLLHYGS-FDFIAWVAVLLLGSGMAEAVMP 271
                 44666777777776666....*********************************9999.8888888887777776666666 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.79   5.7e+02      93     119 ..     141     167 ..      47     207 .. 0.74
   2 ?    8.0   0.0    0.0039       2.8       3      45 ..     341     382 ..     339     410 .. 0.69
   3 ?   -2.2   0.0       5.6     4e+03      64      78 ..     468     482 ..     456     510 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.79
      AAA_14  93 ldvivtGSnskllskeiatslagrvae 119
                 l v++ GS  ++l ++ ++++a r+ +
  CTQ28876.1 141 LGVLAFGSVVLVLARQRSEDMAQRYHK 167
                 557778888888888888888888764 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0039
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkk 45 
                 +i++++G+  +GK+t+++ l++    +++  + i   d rd +
  CTQ28876.1 341 QIVALVGPSGAGKSTVARLLLRYAD-PDKGHIRIGGVDLRDMQ 382
                 799****************998887.66666666555555533 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 5.6
      AAA_14  64 kktylflDEiqevpe 78 
                 ++ +l+lDE+    +
  CTQ28876.1 468 DRPILVLDEATAFAD 482
                 466788888776633 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00045      0.32      28      61 ..     335     368 ..     322     375 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00045
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllkkldkek 61 
                  ++ +++ v lvGp+G GK+++++ ll+  d++k
  CTQ28876.1 335 FHVPAGQIVALVGPSGAGKSTVARLLLRYADPDK 368
                 577788999***************9999888776 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.1   2.2e+03      49      59 ..     248     258 ..     245     306 .. 0.72
   2 ?    7.6   0.0    0.0026       1.9      21      40 ..     341     360 ..     329     370 .. 0.85
   3 ?   -0.2   0.0      0.66   4.7e+02      95     114 ..     460     479 ..     446     516 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.1
                 CCBTEEEEEEE CS
      NB-ARC  49 grFdsvawvvv 59 
                 g Fd +awv v
  CTQ28876.1 248 GSFDFIAWVAV 258
                 68999999965 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0026
                 EEEEEEESTTSSHHHHHHHH CS
      NB-ARC  21 lvvalvGmgGvGKttlakqi 40 
                  +valvG  G GK+t+a+  
  CTQ28876.1 341 QIVALVGPSGAGKSTVARLL 360
                 49**************9865 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.66
                 HHHHHCCCTTEEEEEEEE-S CS
      NB-ARC  95 klvrlLltkrfllvlDDVwe 114
                  + r+Ll+ r +lvlD    
  CTQ28876.1 460 TIARALLQDRPILVLDEATA 479
                 6899************8654 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0011       0.8       2      21 ..     343     362 ..     342     413 .. 0.78
   2 ?   -2.3   0.0       6.3   4.5e+03      66      84 ..     505     523 ..     456     538 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
                 EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg 21 
                 va+vG + +GKSt+ + l++
  CTQ28876.1 343 VALVGPSGAGKSTVARLLLR 362
                 89*************99987 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.3
                 HHHHHHHHHCTSEEEEEEE CS
    MMR_HSR1  66 lgkaflaleeadlillvvd 84 
                 +++++  + +ad+ill  d
  CTQ28876.1 505 VAHRLSMVTQADVILLFSD 523
                 3333333445666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 4137.24
//
Query:       CTQ28877.1  [L=319]
Description: AraC-like regulator YbtA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-18   66.8   0.7    1.5e-18   66.8   0.7    2.2  3  HTH_18      Helix-turn-helix domain
    1.5e-07   31.3   0.1    5.6e-07   29.5   0.1    2.0  2  HTH_AraC    Bacterial regulatory helix-turn-helix proteins, A
     0.0053   16.8   0.0        7.7    6.7   0.0    3.0  3  HTH_7       Helix-turn-helix domain of resolvase
  ------ inclusion threshold ------
      0.044   13.9   0.0      0.079   13.1   0.0    1.4  1  Sigma70_r3  Sigma-70 region 3


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       2.4   1.1e+04      15      30 ..     151     166 ..     149     171 .. 0.62
   2 ?   -1.5   0.1      0.69   3.1e+03      30      42 ..     216     228 ..     214     238 .. 0.76
   3 !   66.8   0.7   3.4e-22   1.5e-18       1      80 [.     239     317 ..     239     317 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.4
                 HHHHHTSS-HHHHHHH CS
      HTH_18  15 lfkrvlgltpkeylrr 30 
                 +++++++lt ++++++
  CTQ28877.1 151 RCNAETHLTAQALRHA 166
                 5666777777666655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.69
                 HHHHHHHHHHHHS CS
      HTH_18  30 rlRlerArrlLle 42 
                 r +l rA++lLl 
  CTQ28877.1 216 RQKLLRAKDLLLA 228
                 6789999999985 PP

  == domain 3  score: 66.8 bits;  conditional E-value: 3.4e-22
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 la++ g+s  +++r f+  ++ +++ + ++ R+++Arr+L+ n ++sv ++A++lG++++s+Fs+af+k fg+tPs++ r
  CTQ28877.1 239 LARESGLSVLKIKRGFRVLFNNSVYGLFQAERMQEARRRLA-NGNTSVMTVAADLGYANASHFSAAFQKQFGVTPSTFKR 317
                 89**************************************7.6*********************************9976 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.6   7.4e+03      11      21 ..     236     246 ..     236     248 .. 0.86
   2 !   29.5   0.1   1.3e-10   5.6e-07       7      38 ..     281     313 ..     278     315 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
                 HHHHHHHTTSS CS
    HTH_AraC  11 iediAdelgfS 21 
                 ++++A e g+S
  CTQ28877.1 236 VAELARESGLS 246
                 6899**99998 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 1.3e-10
                 CT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HH CS
    HTH_AraC   7 tnltiediAdelgf.SrsyFsrlFkketGmtPs 38 
                  n ++  +A+ lg+ + s+Fs +F+k++G+tPs
  CTQ28877.1 281 GNTSVMTVAADLGYaNASHFSAAFQKQFGVTPS 313
                 5678889*************************9 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.99   4.4e+03      25      35 ..     237     247 ..     235     252 .. 0.75
   2 !    6.5   0.0     0.002       8.9       9      29 ..     269     290 ..     265     295 .. 0.88
   3 !    6.7   0.0    0.0017       7.7      29      41 ..     306     318 ..     305     319 .] 0.94

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.99
                 TTTSSSS---S CS
       HTH_7  25 skIAkevnisR 35 
                 +++A+e+++s+
  CTQ28877.1 237 AELARESGLSV 247
                 67899999997 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.002
                 HHHGGGGSSTTTT.--STTTSS CS
       HTH_7   9 ndinrvvkLleeG.isiskIAk 29 
                 +++++++++l++G +s++++A 
  CTQ28877.1 269 ERMQEARRRLANGnTSVMTVAA 290
                 589*****************96 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0017
                 SSS---SSSS--S CS
       HTH_7  29 kevnisRsTvYRy 41 
                 k++++++sT++R+
  CTQ28877.1 306 KQFGVTPSTFKRV 318
                 89**********8 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.8e-05     0.079       3      39 ..     216     252 ..     214     256 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHH CS
  Sigma70_r3   3 lnkikraqreLeqelgrePtpeEiAeeLglseekVre 39 
                 ++k+ ra++ L  +l  +P ++E+A e gls+ k+++
  CTQ28877.1 216 RQKLLRAKDLLLADLTQAPGVAELARESGLSVLKIKR 252
                 689*****************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2637.93
//
Query:       CTQ28878.1  [L=2035]
Description: High-molecular-weight protein 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-93  312.5   0.0      5e-93  312.0   0.0    1.2  1  AMP-binding      AMP-binding enzyme
      4e-52  177.4   0.0    1.2e-26   93.5   0.0    2.2  2  Condensation     Condensation domain
    4.6e-30  103.8   0.2    3.2e-09   37.0   0.0    3.9  3  PP-binding       Phosphopantetheine attachment site
    2.1e-10   41.4   0.1    8.2e-05   23.5   0.0    2.7  2  AMP-binding_C    AMP-binding enzyme C-terminal domain
      1e-09   39.0   0.0    2.9e-09   37.6   0.0    1.9  1  Methyltransf_12  Methyltransferase domain
      5e-08   33.0   0.1    7.9e-07   29.1   0.0    2.9  3  Methyltransf_23  Methyltransferase domain
    2.8e-07   31.1   0.0    9.2e-07   29.5   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    1.9e-05   25.2   0.0    5.2e-05   23.8   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
    0.00066   19.5   0.0     0.0014   18.4   0.0    1.5  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.0   0.0   2.5e-96     5e-93       4     422 ..     575     965 ..     572     966 .. 0.88

  Alignments for each domain:
  == domain 1  score: 312.0 bits;  conditional E-value: 2.5e-96
                  HHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEET CS
  AMP-binding   4 qaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliat 101
                   a ++p++ a++d     ++ Y+el + ++r A  L + Gv++gd+Vai + +++  +va+la+l aGav+vp++ + +a++ + i +d+ +++++  
   CTQ28878.1 575 IALQQPQALAVTD--MRYQWNYHELTDYARRCAGRLIECGVQPGDNVAITMSKGAGQLVAVLAVLLAGAVYVPVSLDQPAARREKIYADASVRLVL-- 668
                  56799******88..8999******************99*********************************************************.. PP

                  CTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCC CS
  AMP-binding 102 vdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfkl 199
                  +        ++++a+  + + + vl        +++ +e+e+   a     ++   p ++ayiiYTSG+TG+PKGV++shr ++++++++  +tr ++
   CTQ28878.1 669 I--------CQHDASAGSDD-IPVLA-------WQQAIEAEPI--A----NPVVRAPTQPAYIIYTSGSTGTPKGVVISHRGALNTCCDI--NTRYQV 742
                  3........23333211111.22222.......3333444333..2....2335799********************************7..667788 PP

                  TTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHH.CCCHHCHHHHCCGTT.-SEEEEESS-E CS
  AMP-binding 200 keddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvlealle.sgalkaakkakdlss.lrlvllggepl 295
                  +++d+vl+   l++++++ ++++++l +G+++v++ +++++dp++++eli++++vt++++vP+++++ll   + ++        +  lr v+l g+++
   CTQ28878.1 743 GPHDRVLALSALHFDLSV-YDIFGVLRAGGALVMVMENQRRDPHAWCELIQRHQVTLWNSVPALFDMLLTwCEGFA-----DATPEnLRAVMLSGDWI 834
                  9****************8.*******************99****************************99765555.....244555*********** PP

                  BHHHHHHHHHHHTC.EEEEEEEEGGGSSEC.EE..CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHE CS
  AMP-binding 296 spellrffralfge.evlegYGlTEttgvv.tv..lpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeaf 389
                    +l  ++ra  ++ +++ + G TE++++  ++   + + ++++++ +G+pl ++++++vDe+ g+ +pd ++Gel+++g gv++gY+++p + ++ f
   CTQ28878.1 835 GLDLPARYRAFRPQgQFIAMGGATEASIWSnACeiHDVPAHWRSIP-YGFPLTNQRYRVVDEQ-GRDCPDWVPGELWIGGTGVAEGYFNDPLRSEQQF 930
                  **********9998****************6337756677888998.**************98.********************************** PP

                  EE.T.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 390 ds.e.grwlrTGDlgrldedGyleivgRkkdlikl 422
                   + + +rw+rTGDlg + +dG++e++gR + ++k+
   CTQ28878.1 931 LTlPdERWYRTGDLGCYWPDGTIEFLGRRDKQVKV 965
                  9884468***************************8 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   2.4e-26   4.8e-23      39     439 ..     150     535 ..     113     552 .. 0.85
   2 !   93.5   0.0   5.8e-30   1.2e-26      38     437 ..    1530    1905 ..    1513    1910 .. 0.84

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 2.4e-26
                   --HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----.EEEE-T..TSSSHHHHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEEEE CS
  Condensation  39 ldlerlekalqelierhdaLRtvfleeengepvQvileerevel.evleisdleeseeeeaieefaqkdlqepfdLekgpLfraalfkiaenrllll 134
                   l  + le+a+++l++rh+ L + f+ +  +   Qv l++   +   v ++++ ++++ ++ ++++ q+ + + +++e g  f ++l  + +nr+ l 
    CTQ28878.1 150 LTASQLEQAITTLLQRHPMLHIAFRPD-GQ---QVWLPQPYWNGvTVHDLRHNDAESRQAYLDALRQRLSHRLLRVEIGETFDFQLTLLPDNRHRLH 242
                   56789*******************655.44...4444444444225688998899998888*******9999************************* PP

                   EEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--.HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S.---BSS---SS---S-EEE CS
  Condensation 135 lsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktp.YkdyaeweqqyleskdlekeeaYWseqlegelpvlq.Lpkdkarpakrsfkadrls 229
                   +++  +i+D+ S+ +++ +l +l      ge+lp+  +   +++y  ++q+  ++  + +++aYW    +  lp +  Lp   ++   r++++ r +
    CTQ28878.1 243 VNIDLLIMDASSFTLFFDELNALL----AGESLPAIDTRYdFRSYLLHQQK-INQPLRDDARAYWLAKAST-LPPAPvLPLACEPATLREVRNTRRR 333
                   ********************9998....*******888878*******555.88999**********9996.77777699998888889******** PP

                   EEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT..CSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHHHHHH CS
  Condensation 230 ikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes..eikdiermvGlFvntlPlridvkeaktfselikrvkedllk 324
                   + ++++  +++ + a e+gvt ++ l ++++++L ++ g +++  +++   R+   +  ++  m+  F+n+l l +   +++t s+l ++ + +  +
    CTQ28878.1 334 MIVPATRWHAFSNRAGEYGVTPTMALATCFSAVLARWGGLTRLLLNITLFDRQPlhP--AVGAMLADFTNILLLDTAC-DGDTVSNLARKNQLTFTE 427
                   ****************************************************98446..*******************.8899*************9 PP

                   HHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HH..CCCEEECCCCSEEECEE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHH CS
  Condensation 325 aephqgypleeLvkdlelqrkesrspLfdpvfsfenylgq..eseeeesqlselklsvssveaeeeskydlsleasetngkltikieYntslFdeet 419
                     +h+     eL ++l++q+     p   pv+   n lg    s+  es l e + ++s  +     +  ++  a+e++g+  ++ + n +lF  + 
    CTQ28878.1 428 DWEHRHWSGVELLRELKRQQR---YPHGAPVVFTSN-LGRslYSSRAESPLGEPEWGISQTP-----QVWIDHLAFEHHGEVWLQWDSNDALFPTAL 515
                   999999988888888887775...455566666666.6664666666666667777755444.....667888899999999999999********* PP

                   HHHHHHHHHHHHHHHHHSTT CS
  Condensation 420 ierflerlkelleqviehpe 439
                   +e++++ + +l++q+ ++ +
    CTQ28878.1 516 VETLFDAYCQLINQLCDDES 535
                   ******99999999988765 PP

  == domain 2  score: 93.5 bits;  conditional E-value: 5.8e-30
                    ---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSSHHHHHHHHHHHHHTC--SCCCS-SEEEEEEESSTTEEE CS
  Condensation   38 eldlerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleeseeeeaieefaqkdlqepfdLekgpLfraalfkiaenrll 132 
                     ldl+rle++++ li rhd LR + + +    + Qv++++ +  + +  +   + +e    + ++ +k + + ++ e  p f  ++  ++   + 
    CTQ28878.1 1530 DLDLTRLETVWNRLIARHDMLRAIVR-D---GQQQVLEQTPPWVIPAHTLH--TPEE----ALRVREKLAHQVLNPEVWPVFDLQVGYVDGMPAR 1614
                    699**********************4.4...46677777777666444444..2222....3445555555678888888888888777777777 PP

                    EEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S---BSS---SS---S-E CS
  Condensation  133 lllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlekeeaYWseqlegelpvlqLpkdkarpakrsfkadr 227 
                    l+l +  +++DG S++ill +l + Y     ++ lp +++t ++dy ++    l+s    ++ a+W+ ql+   p  +Lp +  ++++++ +  r
    CTQ28878.1 1615 LWLCLDNLLLDGLSMQILLAELEHGY--RYPQQLLPPLPVT-FRDYLQQ--PSLQSP-NPDSLAWWQAQLDDIPPAPALPLRCLPQEVETPRFAR 1703
                    7777777*******************..77888999999*9.****988..334444.7799*********9888777****666666666666* PP

                    EEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT..CSTCHHC--SS-EEEEEEEEE--TT-BHHHHHHHHHH CS
  Condensation  228 lsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes..eikdiermvGlFvntlPlridvkeaktfselikrvke 320 
                    l  +ld++  ++l+k a++ + t   vll++++ +Ls ++ q ++  +++   R    +  +i++++G F++ + l  ++  +++  +  +++++
    CTQ28878.1 1704 LNGALDSTRWHRLKKRAADAHLTPSAVLLSVWSTVLSAWSAQPEFTLNLTLFDRRPlhP--QINQILGDFTSLMLLSWHP--GESWLHSAQSLQQ 1794
                    ************************************************98877766356..************9999999..88899******** PP

                    HHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEEESSS-HHCCCEEECCCCSEEECEE...E.....SSEEEEEEETTSSEEEEEEEETTTS CS
  Condensation  321 dllkaephqgypleeLvkdlelqrkesrspLfdpvfsfenylgqeseeeesqlselklsvssveaeeeskydlsleasetngkltikieYntslF 415 
                    +l + ++h+++   ++ ++l++q++    p +   ++f + lg e+++   +++ lk+      ++++ +  l+ +++e++g+l+++ ++  +lF
    CTQ28878.1 1795 RLSQNLNHRDVSAIRVMRQLAQQQN---VPAVPMPVVFTSALGFEQDNFLARRNLLKPVWG---ISQTPQVWLDHQIYESEGELRFNWDFVAALF 1883
                    *********************9998...588889999988777666666666777776644...56688999*********************** PP

                    -HHHHHHHHHHHHHHHHHHHHS CS
  Condensation  416 deetierflerlkelleqvieh 437 
                       ++er +e++  ll++++e+
    CTQ28878.1 1884 PAGQVERQFEQYCALLNRMAED 1905
                    *****************99987 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   5.6e-10   1.1e-06       1      62 [.      22      82 ..      22      86 .. 0.96
   2 !   37.0   0.0   1.6e-12   3.2e-09       2      66 ..    1412    1473 ..    1411    1474 .. 0.93
   3 !   33.3   0.1   2.3e-11   4.5e-08       3      67 .]    1952    2013 ..    1949    2013 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 5.6e-10
  PP-binding  1 eklrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlae 62
                ++lre + + l++ +++++ +++l   GlDS+ ++++l+++++  g +++l++l++ ptla+
  CTQ28878.1 22 QQLRERLIQELNLTPQQLHEESNLIQAGLDSIRLMRWLHWFRKN-GYRLTLRELYAAPTLAA 82
                589*****************************************.***************97 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 1.6e-12
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaay 66  
                  ++ +l++++l +    ++ +td+f  G+DSlla++l+++l ++ g e  lsdlf+hp la++aa 
  CTQ28878.1 1412 QVAALWQQLLSTGN--VTRETDFFQQGGDSLLATRLTGQLHQA-GYEAQLSDLFNHPRLADFAAT 1473
                  7999*******854..669************************.******************986 PP

  == domain 3  score: 33.3 bits;  conditional E-value: 2.3e-11
  PP-binding    3 lrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  ++++++ev g +   ++p +++f+ G  Sl++v+l + l+++   +++l dlf+hp++a+la+yl
  CTQ28878.1 1952 ICDAFREVVGES---VTPAENFFEAGATSLNLVQLHVLLQRHEFSTLTLLDLFTHPSPAALADYL 2013
                  667777777755...89************************9556******************97 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.8e-05     0.037       1      38 [.     974    1008 ..     974    1024 .. 0.86
   2 !   23.5   0.0   4.1e-08   8.2e-05      41      76 .]    1347    1382 ..    1328    1382 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.8e-05
                     HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE--- CS
  AMP-binding_C    1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg 38  
                     e+Esal++  +V++a V ++ ++ k   l+a+Vv++ g
     CTQ28878.1  974 EIESALSQLAGVKQATVLAIGEKEKT--LAAYVVPQ-G 1008
                     8*****************99999666..*******4.5 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 4.1e-08
                     -HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   41 aleeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76  
                       +++L+a ++ +l+ ++vp+++vf+d+lp+t++GK
     CTQ28878.1 1347 RDPRQLQAALAGRLPGWMVPQRIVFLDALPLTANGK 1382
                     35799******************************9 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   1.4e-12   2.9e-09       1      99 []    1182    1279 ..    1182    1279 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1.4e-12
  Methyltransf_12    1 LeiGcGtGsllrallekl..pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl.kdirevldni 89  
                       Le+G+ tG+ ++ ll++l   +iey+g++ s++++  a+++la + + + + ++ ++l ++ +    s D+++++n+lh l ++   +l+ +
       CTQ28878.1 1182 LEVGTRTGRAAESLLAQLnaGQIEYVGLEQSQEMLLSARQRLAPWPGARLSLWNADTLAAHAH----SADIIWLNNALHRLlPEDPGLLATL 1269
                       8*******************************************************9998865....**************988889***** PP

  Methyltransf_12   90 rklLkpgGrl 99  
                        +l +pg+ l
       CTQ28878.1 1270 QQLAVPGALL 1279
                       ******9875 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.8   1.6e+03       4      55 ..      23      77 ..      20     110 .. 0.68
   2 ?   -1.7   0.0       1.2   2.3e+03     107     147 ..     394     436 ..     391     447 .. 0.61
   3 !   29.1   0.0   3.9e-10   7.9e-07       8     125 ..    1163    1301 ..    1157    1328 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.8
  Methyltransf_23  4 qreeelsdklerllpklraggrvLdiGcGtGillevl...rengfsvtgvDlspe 55
                     q++e+l ++l+ +++ l + ++++  G ++ +l++ l   r+ng+ +t+ +l+ +
       CTQ28878.1 23 QLRERLIQELNLTPQQLHEESNLIQAGLDSIRLMRWLhwfRKNGYRLTLRELYAA 77
                     4566777777777777777788888888887754444444999999999999864 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
  Methyltransf_23 107 tllkpgGylllseplaslk.edrllldwlylvpag.rhisffs 147
                      ++l++ +++ll++ +++     +l++++++ ++++ +h+++  
       CTQ28878.1 394 AMLADFTNILLLDTACDGDtVSNLARKNQLTFTEDwEHRHWSG 436
                      5666666677777666654467777777777777767766655 PP

  == domain 3  score: 29.1 bits;  conditional E-value: 3.9e-10
  Methyltransf_23    8 elsdklerllpklraggrvLdiGcGtGillevl.ren....gfsvtgvDlspeaveiae..............kakkaqkdqfdeqeaaepq 80  
                       el+   ++l+++l+++ r+L++G+ tG+ +e+l + +    + +++g ++s e+   a+              +a++           a  +
       CTQ28878.1 1163 ELATICQQLAQRLQRPIRLLEVGTRTGRAAESLlA-QlnagQIEYVGLEQSQEMLLSARqrlapwpgarlslwNADTL----------AAHA 1243
                       566667889999****************9999953.32243459*******999888888888666554444444444..........4444 PP

  Methyltransf_23   81 gkfdlIvlrevlehvpd.ppellrqiatllkpgGylllseplasl............k 125 
                        + d+I l++ l+++ +  p ll+++++l  pg++l+++e+ +               
       CTQ28878.1 1244 HSADIIWLNNALHRLLPeDPGLLATLQQLAVPGALLYVMEFRQLTpsallstllltnG 1301
                       4*************99548*********************843224455444444443 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   4.6e-10   9.2e-07       2      91 ..    1182    1271 ..    1181    1276 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 4.6e-10
                       EEET-TTSHHHHHHHCTS..TSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25    2 LdlGcGtGrltlalakrl..gkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiar 91  
                       L++G+ tGr ++ l+++l  g+ +++g++ s+eml  ar+r++   + +++   +a++l  +++s D++++++alh l +ed + +l+ + +
       CTQ28878.1 1182 LEVGTRTGRAAESLLAQLnaGQIEYVGLEQSQEMLLSARQRLAPW-PGARLSLWNADTLAAHAHSADIIWLNNALHRLLPED-PGLLATLQQ 1271
                       89*************9997669********************765.59999999999**************99999865555.445555554 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.6e-08   5.2e-05       1      95 [.    1182    1280 ..    1182    1281 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.6e-08
                       EEET-TTSHHHHHHH...HTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-.CCHHHHHHHHHHH CS
  Methyltransf_11    1 LdvGcGtGrlaeala...krg.arvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv.edpekalkeiaRv 87  
                       L+vG+ tGr ae l    ++g  ++vg++ s+eml  a+++  + +   ++   +a +l    +s D+++++++lh + ++   +l+ + ++
       CTQ28878.1 1182 LEVGTRTGRAAESLLaqlNAGqIEYVGLEQSQEMLLSARQRLAPWPG-ARLSLWNADTLAAHAHSADIIWLNNALHRLlPEDPGLLATLQQL 1272
                       89************96554449****************999999885.778899999999******************99999999999999 PP

                       EEEEEEEE CS
  Methyltransf_11   88 LkpgGllv 95  
                         pg ll+
       CTQ28878.1 1273 AVPGALLY 1280
                       99998887 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     7e-07    0.0014       4     113 ..    1178    1285 ..    1175    1332 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7e-07
  Methyltransf_31    4 glrvlDlGCGtGeltfelaeelgp.kaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevl.naladpdki 93  
                        +r+l++G+ tG+ +  l  +l+  ++e+vG++ s+e++ +Ar++++     ++++  +d  ++       + D+i  n++l  +l++ +  
       CTQ28878.1 1178 PIRLLEVGTRTGRAAESLLAQLNAgQIEYVGLEQSQEMLLSARQRLAPWPGARLSLWNADTLAAHA----HSADIIWLNNALhRLLPEDPGL 1265
                       6899**********999888777779*******************998888888888888888663....689*********7778888888 PP

  Methyltransf_31   94 leeiervlkpggilliedpr 113 
                       l  ++++  pg  l + ++r
       CTQ28878.1 1266 LATLQQLAVPGALLYVMEFR 1285
                       88888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2035 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.00u 0.29s 00:00:01.29 Elapsed: 00:00:00.42
# Mc/sec: 14678.30
//
Query:       CTQ28879.1  [L=3163]
Description: High Molecular Weight Protein 1 (HMWP1) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-74  251.1   0.0    2.4e-74  250.1   0.0    1.5  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    1.2e-52  179.4   0.9      2e-52  178.7   0.9    1.3  1  Acyl_transf_1    Acyl transferase domain
    1.1e-41  141.5   0.1    1.1e-21   77.5   0.0    3.0  2  Methyltransf_12  Methyltransferase domain
    5.2e-40  136.1   0.1    1.2e-39  134.9   0.1    1.7  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    1.7e-37  129.1   3.8    5.8e-37  127.3   0.8    3.1  3  KR               KR domain
    9.8e-33  113.5   0.8    1.7e-32  112.7   0.8    1.3  1  Condensation     Condensation domain
    1.5e-24   86.1   0.4    4.1e-13   49.5   0.0    3.2  3  PP-binding       Phosphopantetheine attachment site
    2.5e-22   79.4   0.0    2.2e-10   41.1   0.0    3.3  2  Methyltransf_25  Methyltransferase domain
    9.4e-21   75.0   1.0    2.9e-20   73.4   1.0    2.0  1  Thioesterase     Thioesterase domain
    1.5e-20   73.7   0.0    3.6e-10   39.9   0.0    2.9  2  Methyltransf_23  Methyltransferase domain
      1e-17   64.3   0.0      4e-09   36.4   0.0    2.6  2  Methyltransf_31  Methyltransferase domain
    1.2e-17   64.3   0.0    2.6e-08   34.4   0.0    2.8  2  Methyltransf_11  Methyltransferase domain
    6.1e-15   55.7   0.0    1.4e-13   51.2   0.0    2.8  2  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
    1.2e-10   41.2   0.0    0.00028   20.3   0.0    2.3  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    7.6e-08   32.2   0.1    7.6e-08   32.2   0.1    1.8  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.1e-07   31.3   0.0    1.1e-05   24.7   0.0    2.4  2  Methyltransf_33  Histidine-specific methyltransferase, SAM-de
    1.4e-07   31.2   0.0    2.9e-07   30.1   0.0    1.5  1  adh_short        short chain dehydrogenase
    8.5e-07   28.6   0.4    1.7e-06   27.6   0.4    1.4  1  Thiolase_N       Thiolase, N-terminal domain
    3.3e-06   27.0   0.0      0.015   15.0   0.0    2.5  2  DUF938           Protein of unknown function (DUF938)
    2.8e-05   23.9   0.0     0.0055   16.4   0.0    2.5  2  Methyltransf_16  Lysine methyltransferase
    4.7e-05   22.8   0.0     0.0026   17.1   0.0    2.4  2  Methyltransf_2   O-methyltransferase domain
     0.0078   15.9   0.0        2.3    7.8   0.0    2.4  2  Methyltransf_28  Putative S-adenosyl-L-methionine-dependent m
  ------ inclusion threshold ------
       0.01   16.8   0.1       0.65   11.1   0.0    3.5  2  Methyltransf_24  Methyltransferase domain
      0.028   13.7   0.1       0.15   11.3   0.0    2.2  2  Hydrolase_4      Serine aminopeptidase, S33
      0.041   13.0   0.0        3.4    6.6   0.0    2.3  2  RrnaAD           Ribosomal RNA adenine dimethylase
      0.047   13.1   0.1      0.087   12.3   0.1    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.1   0.0   3.4e-77   2.4e-74       2     253 .]      27     276 ..      26     276 .. 0.96

  Alignments for each domain:
  == domain 1  score: 250.1 bits;  conditional E-value: 3.4e-77
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrllleaa 96 
                    epva++G ++ fP+++d e+fw++Llegr++ +++ +++  a +l  ++a + + ++++ g++ld +d+fd+++fg s +eae+mdpqqrl+l+a+
     CTQ28879.1  27 EPVAVIGYACHFPESPDGETFWQNLLEGRECSRRFTREELLAVGL--DAAIIDDPHYVNIGTVLDnADCFDATLFGYSRQEAESMDPQQRLFLQAV 120
                    79**********************************988888888..6************************************************ PP

                    HHHHHHHTS-HHTCTTGGEEEEEEESSTHHHHHHHHHHHTT.GGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHHHHHT CS
  ketoacyl-synt  97 wealedagltpeeldgsrvgvfiGvgagdyaalaaldedgs.evkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavqslrs 191
                    w+ale+ag+ p ++ + ++gvf+ + +++y + +al+ +++ +vk+  + +g+ ++ +ia+r +y+l+l+Gp+++v+tACsSslvavh+a++slr+
     CTQ28879.1 121 WHALEHAGYAPGAVPH-KTGVFASSRMSTYPGREALNVTEVaQVKGLQSLMGN-DKDYIATRAAYKLNLHGPALSVQTACSSSLVAVHLACESLRA 214
                    ***********99776.99***********88888888888778888899**9.****************************************** PP

                    TS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 192 geadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    ge+d+a+aGGv l++ ++a + ++   ++spdg+c++fd++a G++ G G+G+vvL rl+da
     CTQ28879.1 215 GESDMAVAGGVALSFPQQAGYRYQPGMIFSPDGHCRPFDASAEGTWAGNGLGCVVLRRLRDA 276
                    ***********************************************************997 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.9   2.9e-55     2e-52       1     300 [.     551     846 ..     551     863 .. 0.90

  Alignments for each domain:
  == domain 1  score: 178.7 bits;  conditional E-value: 2.9e-55
                    EEEE--TT---TTTTCCHHHC-HHHHHHHHHHHHHCCHHHT--HHHHHHS--TTGGGSHHHHHHHHHHHHHHHHHHHHHTT-TTSEEEE-TTHHHH CS
  Acyl_transf_1   1 vfvfsGqGsQwaGMGmeLlktskafaaviaradeafksqygfsvldvlrnnpeglldaiqfvqpaLaavqialaellkskGvrpaavvGHSlGElA 96 
                    v++f+GqGs w+ MG  +++ s afa++++r+  a  ++   s+ +++ n +  +ld++  +qpa++a +ia a+++++ G++p+  +GHS+GE A
     CTQ28879.1 551 VWLFTGQGSHWRTMGQTMYQHSTAFADTLDRCFSACSEMLTPSLREAMFNPDSAQLDNMAWAQPAIVAFEIAMAAHWRAEGLKPDFAIGHSVGEFA 646
                    79********************************************************************************************** PP

                    HHHHCCSSSHHHHHHHHHHHHHHHHHHTS-EECCEECS.HHHHHHH...TT.EEEEEEECCCCECCEEHHHHHHHHHHHHHCC.CCEEECCCEECT CS
  Acyl_transf_1  97 aavvagalsseeallavvlrsrlmmqlagpgdmaavelaeeeeklr.cqddvvgavansprrvvisgsqealrelvervskegvgalvenvnvavh 191
                    aavv+g  +  e +  +v r++  mq    g+m av  +e +++    q ++ +a+ n+ + +v sg++++l+ + + +s++++  ++  v  a+h
     CTQ28879.1 647 AAVVCGHYTI-EQVMPLVCRRGALMQQCASGAMVAVFADEDTLMPLaRQFELDLAANNGTQHTVFSGPEARLAVFCATLSQHDINYRRLSVTGAAH 741
                    *******885.5666666677777777789*****999777777655999********************************************** PP

                    TCCCCCCCCHHHHHHHHCCCHHCHHTTBEHCCCHHHHHHCH.HHHHHHHHHHCHCCHCCHHTTSSSECC-CCEECSSSSCCHCCCCCCCHHGGG-T CS
  Acyl_transf_1 192 spqvdaiadalasaladiaprkpkvakisstsldesserel.saeywvanlrspvrfaeavlsaaetiplvfveispHslllaalektlksaedvk 286
                    s+ +++i d  + a a +  ++ +++ is++++d  +e +l +a+yw++ +r+pvrf + ++ a + + +vf+e+ p ++l+a +++ +++     
     CTQ28879.1 742 SALLEPILDRFQDACAGLHAEPGQIPIISTLTADVIDESTLnQADYWRRHMRQPVRFIQSIQVAHQLGARVFLEMGPDAQLVACGQREYRD----- 832
                    *****************8889***************888883689*********************************************4..... PP

                    CCCCCCTEETTSS- CS
  Acyl_transf_1 287 satlvGklkrdltd 300
                    +a  + + +r++++
     CTQ28879.1 833 NAYWIASARRNKEA 846
                    45555555555555 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   1.5e-24   1.1e-21       1      99 []    1093    1194 ..    1093    1194 .. 0.99
   2 !   61.0   0.0   2.1e-19   1.4e-16       1      99 []    2593    2693 ..    2593    2693 .. 0.99

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 1.5e-24
  Methyltransf_12    1 LeiGcGtGsllrallekl...pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldni 89  
                       Le+G+GtG +++ ll++l   p +ey+++Dis+ +  +a++k+a+++  + ++++le++  ++ ++ +s+Dl+va+nv+h++++i ++ldn+
       CTQ28879.1 1093 LEVGGGTGGTTAWLLPELngvPALEYHFTDISALFTRRAQQKFADYDFVKYSELDLEKEAQSQGFQAQSYDLIVAANVIHATRHIGRTLDNL 1184
                       8***********************************************************9999999************************* PP

  Methyltransf_12   90 rklLkpgGrl 99  
                       r lLkpgGrl
       CTQ28879.1 1185 RPLLKPGGRL 1194
                       ********97 PP

  == domain 2  score: 61.0 bits;  conditional E-value: 2.1e-19
  Methyltransf_12    1 LeiGcGtGsllrallekl..pdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhlkdirevldnir 90  
                       Le+G+Gt+++++++l+++   + +y+++D+s+++++da+ +++++++ + + +++++  ++  ++++ +Dl+va nvlh   ++ ++l++++
       CTQ28879.1 2593 LEVGAGTAATTAPVLKATrnTRQSYHFTDVSAQFLNDARSRFHDESQVSYALFDINQPLDFTAHPEAGYDLIVAVNVLHDASHVVQTLRRLK 2684
                       8*****************9999********************************************************************** PP

  Methyltransf_12   91 klLkpgGrl 99  
                        lLk gGrl
       CTQ28879.1 2685 LLLKAGGRL 2693
                       *******97 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.1   1.8e-42   1.2e-39       2     117 ..     285     401 ..     284     402 .. 0.98

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 1.8e-42
                      EEEEEEEEEE--.STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   2 avikgsavnsdg.ahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      +vi  savn+dg ++ ++tap+ ++q+++ie+al  a +d ++v+y+e hgtgtplgD+iE+eal++v++ + ++q++a+gSvKsn+GHl  Aa
       CTQ28879.1 285 SVILSSAVNNDGnRKVGYTAPSVAGQQAVIEEALMLAAIDDRQVGYIETHGTGTPLGDAIEIEALRNVYAPRPQDQRCALGSVKSNMGHLDTAA 378
                      699******************************************************************************************* PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      G+a+l+k+vla+ +g+ipp ln+
       CTQ28879.1 379 GIAGLLKTVLAVSRGQIPPLLNF 401
                      **********************8 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.99   6.8e+02     131     159 ..     551     579 ..     544     585 .. 0.89
   2 !  127.3   0.8   8.5e-40   5.8e-37       3     179 ..    1560    1729 ..    1559    1730 .. 0.94
   3 ?   -1.6   0.0       3.2   2.2e+03     119     166 ..    3038    3083 ..    3036    3092 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.99
                 EEEEEEHHHHH--TT-HHHHHHHHHHHHH CS
          KR 131 fvlfSSiagllgsagqanYaaaNaflDal 159
                 ++lf+  ++ + ++gq+ Y+   af D+l
  CTQ28879.1 551 VWLFTGQGSHWRTMGQTMYQHSTAFADTL 579
                 67899999*******************98 PP

  == domain 2  score: 127.3 bits;  conditional E-value: 8.5e-40
                  EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT CS
          KR    3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdkllee 99  
                  +l+tG++GgLG+  ++wl ekgar+++ll+ +      ++++++ +e  g + +v+++Dv d+ +++++l+++ a++  i+G ihaAgvl+d++l+e
  CTQ28879.1 1560 HLVTGAFGGLGRLAVNWLREKGARRIALLAPR-----VDESWLRDVE--GGQTRVCRCDVGDAGQLATVLDDLAANG-GIAGAIHAAGVLADAPLQE 1648
                  8*******************************.....3455788666..677789******************8665.******************* PP

                  --HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHT.EEEEEE--BT CS
          KR  100 mtaedleqvlapKvkGawnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqglp.avsinwglwa 179 
                  +++ +l++v+a K ++a +L ++l++++  +++l+SS+a++lg++gq+++a a+ +lD+la++ +++ +p ++s++wg+w 
  CTQ28879.1 1649 LDDHQLAAVFAVKAQAASQLLQTLRNHDGRYLILYSSAAATLGAPGQSAHALACGYLDGLAQQFSTLDAPkTFSVAWGAWG 1729
                  ******************************************************************9998799*******7 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.2
                  HHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHH CS
          KR  119 LhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsq 166 
                   ++ ++d++l  f+ ++  ag++ ++   + +aa ++lD +a+  r +
  CTQ28879.1 3038 FDQQTPDSQLADFISLAKTAGMVSQN--LTLQAAETWLDNIAHLLRLL 3083
                  56777777777777777777766544..56789*********987765 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   0.8   2.4e-35   1.7e-32      34     357 ..    1948    2261 ..    1915    2342 .. 0.87

  Alignments for each domain:
  == domain 1  score: 112.7 bits;  conditional E-value: 2.4e-35
                    EEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-.TT-----EEEE-T..TSSSHHHHHHHHHHHH..HTC--SCCCS-SEEEEEEE CS
  Condensation   34 klegeldlerlekalqelierhdaLRtvfleeengepvQvil.eerevelevleisdleeseeeeaieefaqkd..lqepfdLekgpLfraalfk 125 
                    k + e++l  leka+++li rhd LR+v     + +  Q+il ++ e+++   +++  + s ee+ i   ++++  + + +  ++ pLf   + +
    CTQ28879.1 1948 KRHDEFNLAILEKAWNQLIARHDMLRMVV----DADGQQRILaTTPEYHIPRDDLR--ALSPEEQRIALEKRRHelSYRVLPADQWPLFELVVSE 2036
                    56889************************....34566777768899999999999..5555566676666664224555666777********* PP

                    SSTTEEEEEEEEECCT--TTTHHHHHHHHHHHHHHHHTT-------S--HHHHHHHHHHHHCSHHHHHHHHHHHHHHH......S.---BSS--- CS
  Condensation  126 iaenrlllllsvHHiivDGvSlgillrdlaklYqqlekgeelplpqktpYkdyaeweqqyleskdlekeeaYWseqlegelpvlq.Lpkdkarpa 219 
                    i++ ++ l +++  + +D  S+++++ dla++     +ge+l  + +t ++dy+ +eq  ++  ++ ++ +YW+e l + lp +  Lp  +++p+
    CTQ28879.1 2037 IDDCHYRLHMNLDLLQFDVQSFKVMMDDLAQVW----RGETLAPLAIT-FRDYVMAEQARRQTSAWHDAWDYWQEKLPQ-LPLAPeLPVVETPPE 2125
                    *********************************....***********.*****************************8.887777999999999 PP

                    SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEEEEEEESSTT..CSTCHHC--SS-EEEEEEEEE--TT-BHH CS
  Condensation  220 krsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivvgteisgRes..eikdiermvGlFvntlPlridvkeaktfs 312 
                       f   +++ ++ ++  +++++  ++qgvt    ll++++++L+++++++ +  ++++ +R+   +  +i++ +G F+++  +  + ++  t++
    CTQ28879.1 2126 TPHFT--TFKSTIGKTEWQAVKQRWQQQGVTPSAALLTLFAATLERWSRTTTFTLNLTFFNRQPihP--QINQLIGDFTSVTLVDFNFSAPVTLQ 2216
                    99999..999999**************************************************9545..************************** PP

                    HHHHHHHHHHHHHHCCTTS-HHHHHHCSS.SS-SSSS-S-SEEEE CS
  Condensation  313 elikrvkedllkaephqgypleeLvkdlelqrkesrspLfdpvfs 357 
                    e +++++++l + + h+++   e++++l + r  +r+pL+ +vf+
    CTQ28879.1 2217 EQMQQTQQRLWQNMAHSEMNGVEVIRELGRLRGSQRQPLMPVVFT 2261
                    *******************9888888888888889****988886 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   6.4e-11   4.4e-08       2      67 .]    1823    1889 ..    1822    1889 .. 0.91
   2 !   49.5   0.0   5.9e-16   4.1e-13       2      67 .]    2832    2894 ..    2831    2894 .. 0.94
   3 ?   -2.0   0.0       6.9   4.7e+03      43      66 ..    3036    3059 ..    3033    3060 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 6.4e-11
  PP-binding    2 klrelvaevlgv.pleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67  
                  +l+  +a +l++ ++ +++p++dl  lG+DSll++el + +++ +gv+i+ +  ++  ++  l++++
  CTQ28879.1 1823 WLKKRIAVQLRLsDPASLHPNQDLLQLGMDSLLFLELSSDIQHYLGVRINAERAWQDLSPHGLTQLI 1889
                  7899999999*9777889**********************************999988888887765 PP

  == domain 2  score: 49.5 bits;  conditional E-value: 5.9e-16
  PP-binding    2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgv.eiplsdlfehptlaelaayl 67  
                  ++ el++++l +p+ +   ++d+f+lG+DSl+a++++a+l+++ g+ + +l dlf h+tl++++a+l
  CTQ28879.1 2832 QVAELWQSLLSRPVAR---HHDFFELGGDSLMATRMVAQLNRR-GIaRANLQDLFSHSTLSDFCAHL 2894
                  799**********776...************************.666******************97 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 6.9
  PP-binding   43 eefgveiplsdlfehptlaelaay 66  
                  e+f+ + p+s+l ++ +la  a +
  CTQ28879.1 3036 EHFDQQTPDSQLADFISLAKTAGM 3059
                  89**********99*999988876 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   3.2e-13   2.2e-10       1      97 []    1092    1192 ..    1092    1192 .. 0.84
   2 !   34.7   0.0   3.3e-11   2.2e-08       1      97 []    2592    2691 ..    2592    2691 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 3.2e-13
                       EEEET-TTSHHHHHHHCTS.T..SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC....CGBSSSTTTEEEEEEESTGGGSSHHHHHHH CS
  Methyltransf_25    1 vLdlGcGtGrltlalakrl.g..kakvtgvDiseemleaareraeeeglnvefvqgda....edlpfedgsfDlvvssgalhhlsdedleka 85  
                       +L++G GtG +t++l+ +l g  + +++ +Dis+ + ++a++++++ +  v++ + d+    ++  f+++s+Dl+v+++++h +   ++ ++
       CTQ28879.1 1092 ILEVGGGTGGTTAWLLPELnGvpALEYHFTDISALFTRRAQQKFADYD-FVKYSELDLekeaQSQGFQAQSYDLIVAANVIHATR--HIGRT 1180
                       8*****************974669********************8766.566666666211144669**********98888755..899** PP

                       HHHHHHHEEEEE CS
  Methyltransf_25   86 lkeiarvLkpgG 97  
                       l++++ +LkpgG
       CTQ28879.1 1181 LDNLRPLLKPGG 1192
                       ***********9 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 3.3e-11
                       EEEET-TTSHHHHHHHCTS.T.SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSS...STTTEEEEEEESTGGGSSHHHHHHHH CS
  Methyltransf_25    1 vLdlGcGtGrltlalakrl.g.kakvtgvDiseemleaareraeeeglnvefvqgdaed.lpf...edgsfDlvvssgalhhlsdedlekal 86  
                       +L++G+Gt  +t+ ++k+  + +++++ +D+s+++l+ ar+r+++e  +v++   d+++ l+f   +++ +Dl+v++++lh    +++ ++l
       CTQ28879.1 2592 ILEVGAGTAATTAPVLKATrNtRQSYHFTDVSAQFLNDARSRFHDE-SQVSYALFDINQpLDFtahPEAGYDLIVAVNVLHDA--SHVVQTL 2680
                       8*****************97469********************776.5999999999665665555899*******9888864..57899** PP

                       HHHHHHEEEEE CS
  Methyltransf_25   87 keiarvLkpgG 97  
                       ++++ +Lk gG
       CTQ28879.1 2681 RRLKLLLKAGG 2691
                       *********99 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   1.0   4.3e-23   2.9e-20       2     101 ..    2915    3006 ..    2914    3152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 4.3e-23
                    EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTSTSHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEE CS
  Thioesterase    2 pLflfppagGsasvfrslasklsdpvvevlavqlpgrerdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavks 96  
                    +Lf+f+ + G +s+   las+l+++   v+++q+ +     +   +++++++ey+ ++r++qp+gPy+l+G+S+G++lA  +A++L ++G++v+ 
    CTQ28879.1 2915 TLFVFHASDGDISAWLPLASALNRR---VFGLQAKSP----QRFATLDQMIDEYVGCIRRQQPHGPYVLAGWSYGAFLAAGAAQRLYAKGEQVR- 3001
                    79**********************9...777777777....4699************************************************8. PP

                    EEEES CS
  Thioesterase   97 lflid 101 
                    ++lid
    CTQ28879.1 3002 MVLID 3006
                    55666 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   5.2e-13   3.6e-10      20     163 ..    1086    1246 ..    1065    1247 .. 0.67
   2 !   30.3   0.0   4.8e-10   3.3e-07      20     123 ..    2586    2701 ..    2554    2748 .. 0.70

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 5.2e-13
  Methyltransf_23   20 lraggrvLdiGcGtGillevl..rengf...svtgvDlspeaveiae....kakkaqkdqfdeqeaaepqg....kfdlIvlrevlehvpdp 98  
                        r++ r+L++G GtG ++  l  + ng+   ++ + D+s     +a+      ++ + +  d +++a++qg    ++dlIv+ +v++  ++ 
       CTQ28879.1 1086 PRQPLRILEVGGGTGGTTAWLlpELNGVpalEYHFTDISALFTRRAQqkfaDYDFVKYSELDLEKEAQSQGfqaqSYDLIVAANVIHATRHI 1177
                       57778**********7766665777776668999*****988888878666333333333333344444445555***************** PP

  Methyltransf_23   99 pellrqiatllkpgGylllseplasl...kedrllld......wlylvpagrhi.sffsarslkelleeaGlevv 163 
                        ++l++++ llkpgG+ll +e++++                   ++++ + r +  f +  ++ +++++aG++ v
       CTQ28879.1 1178 GRTLDNLRPLLKPGGRLLMREITQPMrlfD------FvfgplvLPLQDLDAREGeLFLTTAQWQQQCRHAGFSKV 1246
                       *********************976643330......333333323333333333144466777777777777766 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 4.8e-10
  Methyltransf_23   20 lraggrvLdiGcGtG.illevl.rengf..svtgvDlspeaveiae........kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdpp 99  
                       l +  r+L++G+Gt  ++++vl +++ +  s+ + D s +  + a+          +  ++ + + ++ a p++ +dlIv+ +vl+   ++ 
       CTQ28879.1 2586 LCSAERILEVGAGTAaTTAPVLkATRNTrqSYHFTDVSAQFLNDARsrfhdesqVSYALFDINQPLDFTAHPEAGYDLIVAVNVLHDASHVV 2677
                       445669*********889999953334456999****9987776655566555422222222222235666999****************** PP

  Methyltransf_23  100 ellrqiatllkpgGylllseplas 123 
                        +lr+++ llk gG+ll+ e +++
       CTQ28879.1 2678 QTLRRLKLLLKAGGRLLIVEATER 2701
                       ******************998543 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   5.8e-12     4e-09       3     113 ..    1088    1200 ..    1086    1253 .. 0.86
   2 !   25.2   0.0   1.7e-08   1.2e-05       3     113 ..    2588    2699 ..    2586    2729 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 5.8e-12
  Methyltransf_31    3 kglrvlDlGCGtGeltfelaeelgp..kaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsnevlnaladp 90  
                       + lr+l++G GtG  t  l  el+     e++  Dis+   ++A+++ +   +d v+ ++ d e+ ++++ ++ +++Dli++ +v++a+ + 
       CTQ28879.1 1088 QPLRILEVGGGTGGTTAWLLPELNGvpALEYHFTDISALFTRRAQQKFA--DYDFVKYSELDLEKeAQSQgFQAQSYDLIVAANVIHATRHI 1177
                       5689****************9776654889****************877..8999**********99999********************** PP

  Methyltransf_31   91 dkileeiervlkpggilliedpr 113 
                         +l ++  +lkpgg+ll++++ 
       CTQ28879.1 1178 GRTLDNLRPLLKPGGRLLMREIT 1200
                       ********************998 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 1.7e-08
  Methyltransf_31    3 kglrvlDlGCGtGeltfelae.elgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsnevlnaladpd 91  
                       ++ r+l++G+Gt + t    + + +++  ++  D s++ ++ Ar++      + v+    di++ l+ +   ++ +Dli++ +vl++ ++  
       CTQ28879.1 2588 SAERILEVGAGTAATTAPVLKaTRNTRQSYHFTDVSAQFLNDARSRFH--DESQVSYALFDINQpLDFTaHPEAGYDLIVAVNVLHDASHVV 2677
                       5789********99999998866666777****************854..44569999999999999776666******************* PP

  Methyltransf_31   92 kileeiervlkpggilliedpr 113 
                       ++l++++ +lk gg+lli ++ 
       CTQ28879.1 2678 QTLRRLKLLLKAGGRLLIVEAT 2699
                       *****************98876 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.8e-11   2.6e-08       1      95 [.    1093    1195 ..    1093    1196 .. 0.89
   2 !   27.1   0.0     7e-09   4.9e-06       1      96 []    2593    2695 ..    2593    2695 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3.8e-11
                       EEET-TTSHHHHHHH..HTT...SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC....TSS-TT-EEEEEEES-CCC-CCHHHHHHH CS
  Methyltransf_11    1 LdvGcGtGrlaeala..krg...arvvgvDlskemlklakekaseeglkvefvvadaek....lpfednsfDlvvssevlhhvedpekalke 83  
                       L+vG GtG  +++l    +g    ++  +D+s+ ++++a++k  + ++ v++ + d+ek      f+ +s+Dl+v+ +v+h      ++l++
       CTQ28879.1 1093 LEVGGGTGGTTAWLLpeLNGvpaLEYHFTDISALFTRRAQQKFADYDF-VKYSELDLEKeaqsQGFQAQSYDLIVAANVIHATRHIGRTLDN 1183
                       89*************864458999*********************998.8897777775443268*************************** PP

                       HHHHEEEEEEEE CS
  Methyltransf_11   84 iaRvLkpgGllv 95  
                       ++ +LkpgG+l+
       CTQ28879.1 1184 LRPLLKPGGRLL 1195
                       *********997 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 7e-09
                       EEET-TTSHHHHHHHHTT....SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC....TSS-TT-EEEEEEES-CCC-CCHHHHHHHH CS
  Methyltransf_11    1 LdvGcGtGrlaealakrg....arvvgvDlskemlklakekaseeglkvefvvadaek....lpfednsfDlvvssevlhhvedpekalkei 84  
                       L+vG+Gt + ++++ k+      ++  +D+s+++l+ a+++ ++e  +v++   d+ +    +  +++ +Dl+v+ +vlh    + ++l+ +
       CTQ28879.1 2593 LEVGAGTAATTAPVLKATrntrQSYHFTDVSAQFLNDARSRFHDES-QVSYALFDINQpldfTAHPEAGYDLIVAVNVLHDASHVVQTLRRL 2683
                       89***********99444456799999*****************99.59**99999987443457889************************ PP

                       HHHEEEEEEEEE CS
  Methyltransf_11   85 aRvLkpgGllvi 96  
                       + +Lk gG+l+i
       CTQ28879.1 2684 KLLLKAGGRLLI 2695
                       *********986 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   2.1e-16   1.4e-13       1     108 [.     404     515 ..     404     517 .. 0.82
   2 ?    0.5   0.0       1.2   8.2e+02      32      49 ..    1933    1950 ..    1931    1967 .. 0.84

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 2.1e-16
  KAsynt_C_assoc   1 PnpeipaleegrlkVvteptpwpggi..vgvNsfGfGGsnvHviLksnk...kekrkeeskeeslprLlvlsgrteeaveallekleehlldael 90 
                     Pnp ++ lee  ++++ ++  w++++  +gv+sfG+GG+n+H+i+ s +   +++  +++++ ++++ l+ls+ +++a+++l+++++  l+++++
      CTQ28879.1 404 PNPALK-LEESPFTIPVSAQAWQDEMryAGVSSFGIGGTNCHMIVASLPdalNARL-PNTDSGRKSTALLLSAASDSALRRLATDYAGALRENAD 496
                     9*****.****************99999*******************995533333.3333588999999*******************888777 PP

  KAsynt_C_assoc  91 lsllneilseeisr.lpyR 108
                      s+l+ ++ ++++  lp+R
      CTQ28879.1 497 ASSLAFTALHARRLdLPFR 515
                     7776666544444337776 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.2
  KAsynt_C_assoc   32 fGfGGsnvHviLksnkke 49  
                      +G+GG+ +Hv+ +  k++
      CTQ28879.1 1933 IGYGGVACHVLFEWDKRH 1950
                      69********99987754 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     4e-07   0.00028      40     158 ..    1081    1203 ..    1074    1213 .. 0.86
   2 !   18.3   0.0   1.7e-06    0.0012      38     156 ..    2579    2700 ..    2574    2712 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4e-07
                       HHH--S--TTEEEEES-TT-HHHHHHHHHHHHHH..EEEEEES-HHHHHHHHHHHHHHTSS...TEEEEE--TTT-TTS-T-EEEEEEES-G CS
  Ubie_methyltran   40 eklvavkrgakvlDvagGtgDlafklsdsvgekg..kvvvlDinenmLkvgekklkeegki...nieflqanaeeLpfeddsfDvvtvsfGl 126 
                        ++  ++++ ++l+v gGtg  ++ l+ +++     + +  Di++   + +++k  +  ++   +++ l  +a+   f+ +s+D++  +  +
       CTQ28879.1 1081 VQTRQPRQPLRILEVGGGTGGTTAWLLPELNGVPalEYHFTDISALFTRRAQQKFADYDFVkysELD-LEKEAQSQGFQAQSYDLIVAANVI 1171
                       5667789999**************9998887544348899****************99988432333.678899999*************** PP

                       GG-S-HHHHHHHHHHHEEEEEEEEEEEE---- CS
  Ubie_methyltran  127 rnvtDklkaLkeayrvlkpGGrlvvlefskve 158 
                         +  + ++L +++  lkpGGrl++ e++++ 
       CTQ28879.1 1172 HATRHIGRTLDNLRPLLKPGGRLLMREITQPM 1203
                       ***************************99984 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.7e-06
                       HHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHH.EEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-...T-EEEEEEES- CS
  Ubie_methyltran   38 fveklvavkrgakvlDvagGtgDlafklsdsvgekg.kvvvlDinenmLkvgekklkeegkinieflqanaeeLpfed...dsfDvvtvsfG 125 
                       ++ ++ a  +++++l+v +Gt+  ++ ++++ +++    +  D++++ L+ ++ + ++e++++  +   n + L+f+      +D++     
       CTQ28879.1 2579 YTAQIAALCSAERILEVGAGTAATTAPVLKATRNTRqSYHFTDVSAQFLNDARSRFHDESQVSYALFDIN-QPLDFTAhpeAGYDLIVAVNV 2669
                       677778888899***************99999876537899******************98877766655.567776522267888888888 PP

                       GGG-S-HHHHHHHHHHHEEEEEEEEEEEE-- CS
  Ubie_methyltran  126 lrnvtDklkaLkeayrvlkpGGrlvvlefsk 156 
                       l + +   ++L+ +   lk+GGrl+++e ++
       CTQ28879.1 2670 LHDASHVVQTLRRLKLLLKAGGRLLIVEATE 2700
                       88888888999999999**********9765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.3       9.2   6.3e+03     135     158 ..    1469    1492 ..    1442    1493 .. 0.69
   2 !   32.2   0.1   1.1e-10   7.6e-08       1     154 [.    1564    1711 ..    1564    1722 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 9.2
                    STTTTHHHHHHHHHHHHHHHHHHH CS
  adh_short_C2  135 vpnynaygaaKaalealtrylAve 158 
                    v++++a +a+ +al al r +A+e
    CTQ28879.1 1469 VEENEALSASHHALWALLRVAANE 1492
                    455579999999999999999987 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 1.1e-10
                    TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2    1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95  
                    Ga  g+Gr ++  l e+Ga+ ++  + + +++ +++++  ++++v++cDV d  q++++ ++++++ g++ +++++ag+  +  +p+ e+++ ++
    CTQ28879.1 1564 GAFGGLGRLAVNWLREKGARRIALLAPRVDESWLRDVE-GGQTRVCRCDVGDAGQLATVLDDLAAN-GGIAGAIHAAGVLAD--APLQELDDHQL 1654
                    7889***************9877777777756666665.46778******************9987.99*************..*********** PP

                    HHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHH CS
  adh_short_C2   96 draldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtry 154 
                    + +++v+++++ +l++ +++  ++g  ++  ss +a+ + p+++a + a + l +l+++
    CTQ28879.1 1655 AAVFAVKAQAASQLLQTLRN--HDGRYLILYSSAAATLGAPGQSAHALACGYLDGLAQQ 1711
                    *********99888887754..345668888*************999998888888766 PP

>> Methyltransf_33  Histidine-specific methyltransferase, SAM-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.036        25      63     114 ..    1087    1144 ..    1065    1171 .. 0.78
   2 !   24.7   0.0   1.6e-08   1.1e-05      46     112 ..    2573    2637 ..    2554    2655 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.036
  Methyltransf_33   63 a...tlvelGsGsseKtrlLLealeaaekeltYvplDvseeaLeealealaa....eyp 114 
                       +   +++e G G++  t+ LL +l+     l+Y   D+s+ + ++a ++ a+    +y+
       CTQ28879.1 1087 RqplRILEVGGGTGGTTAWLLPELN-GVPALEYHFTDISALFTRRAQQKFADydfvKYS 1144
                       235699******************5.446899********9999999998765555444 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1.6e-08
  Methyltransf_33   46 iaiLqehaaeiaaaipaatlvelGsGsseKtrlLLealeaaekeltYvplDvseeaLeealealaae 112 
                        a+L+++ a+iaa+++a++++e G+G++  t+ +L+a +++  +  Y   Dvs+++L++a ++ ++e
       CTQ28879.1 2573 SACLNRYTAQIAALCSAERILEVGAGTAATTAPVLKATRNT--RQSYHFTDVSAQFLNDARSRFHDE 2637
                       689***********************************855..789999**********99988776 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   4.3e-10   2.9e-07       4     150 ..    1561    1699 ..    1558    1723 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 4.3e-10
                  EEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short    4 lvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99  
                  lvtGa +G+Gr  ++ l ++Ga+ ++ ++ + ++   ++  ++  g +  ++++Dv d+ ++ +++++  +  g++   ++ AG+  ++p +el++ 
  CTQ28879.1 1561 LVTGAFGGLGRLAVNWLREKGARRIAlLAPRVDES--WLRDVE--GGQTRVCRCDVGDAGQLATVLDDL-AANGGIAGAIHAAGVLADAPLQELDDH 1652
                  8**********************999777777755..888877..689********************9.56699********************** PP

                  HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHH CS
   adh_short  100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYs 150 
                  +  +v++v  +++ +l +++ ++     +   +  sS a+  + +g++a +
  CTQ28879.1 1653 QLAAVFAVKAQAASQLLQTLRNH----DGRYLILYSSAAATLGAPGQSAHA 1699
                  ***********998888875555....344477778888888888888766 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.4   2.4e-09   1.7e-06      57     112 ..     172     225 ..     152     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 2.4e-09
                 TSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEE CS
  Thiolase_N  57 gegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsiaageadvvvagGv 112
                 ++   ia  aa k+++  + pa  v+ +csS+l av+la++s++age+d++vagGv
  CTQ28879.1 172 NDKDYIATRAAYKLNL--HGPALSVQTACSSSLVAVHLACESLRAGESDMAVAGGV 225
                 4444588899999999..99***********************************8 PP

>> DUF938  Protein of unknown function (DUF938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.2e-05     0.015      17     115 ..    1076    1174 ..    1068    1197 .. 0.74
   2 !    9.1   0.0    0.0015         1      16     139 ..    2574    2695 ..    2564    2706 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.2e-05
      DUF938   17 vLksylaktte....rvLEiasGtGqHAvffApal...pnlkwqpsdqdeelresiaawadelalsnlkpPleldvtaevapvereappapasidai 106 
                  vL+  +++++     r+LE++ GtG   +++ p+l   p l++  +d     +   +  ++++a   +    eld  +e ++       + +s+d+i
  CTQ28879.1 1076 VLRGIVQTRQPrqplRILEVGGGTGGTTAWLLPELngvPALEYHFTDISALFT---RRAQQKFADYDFVKYSELDLEKEAQSQG----FQAQSYDLI 1165
                  6666666666555679***************9987444788999999988885...5666777777888888999999966666....4789***** PP

      DUF938  107 lsinllHis 115 
                  +++n++H +
  CTQ28879.1 1166 VAANVIHAT 1174
                  *******65 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0015
      DUF938   16 evLksylaktte.....rvLEiasGtGqHA..vffApalpnlkwqpsdqdeelresiaawadelalsnlkpPleldvtaevapvereappapasida 105 
                  + L++y a+        r+LE+++Gt      v  A++  +  +  +d+  +  +  +   ++ +     +    d++++  +  +     +a++d+
  CTQ28879.1 2574 ACLNRYTAQIAAlcsaeRILEVGAGTAATTapVLKATRNTRQSYHFTDVSAQFLNDARSRFHDES---QVSYALFDINQP-LDFTA---HPEAGYDL 2663
                  555555554433333459*******9755412344666666677777777776544444433332...223334688777.45553...4799**** PP

      DUF938  106 ilsinllHispwsaveglfagagellkkkavlvi 139 
                  i+++n+lH    s v   ++ ++ llk +++l+i
  CTQ28879.1 2664 IVAVNVLHDA--SHVVQTLRRLKLLLKAGGRLLI 2695
                  ********65..4556667888999999988876 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     8e-06    0.0055      40     155 ..    1082    1196 ..    1064    1201 .. 0.77
   2 ?    4.6   0.0     0.034        24      46     156 ..    2588    2696 ..    2568    2711 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8e-06
  Methyltransf_16   40 lganelsklsvlELGsGtGlvGl.avael..lpeakviltDleellellkknielnknalkskvkvevLdWgeeleedllekeevDlilaaD 128 
                       + ++ +++l++lE+G GtG +    + el  +p ++   tD++ l        +  k a  + vk+++Ld ++e +++ ++++++Dli+aa 
       CTQ28879.1 1082 QTRQPRQPLRILEVGGGTGGTTAwLLPELngVPALEYHFTDISALFTRRA---QQ-KFADYDFVKYSELDLEKEAQSQGFQAQSYDLIVAAN 1169
                       45678999**********855440344446669999*****998654332...22.2345799***************************** PP

  Methyltransf_16  129 cvYledslelLvkvLkellkkeskvlv 155 
                       ++     +   ++ L+ llk+ + +l+
       CTQ28879.1 1170 VIHATRHIGRTLDNLRPLLKPGGRLLM 1196
                       ****99999999999888887766665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.034
  Methyltransf_16   46 sklsvlELGsGtGlvGlavael..lpeakviltDleellellkknielnknalkskvkvevLdWgeeleedllekeevDlilaaDcvYleds 135 
                       s  ++lE+G+Gt  +   v ++   ++ +   tD++   ++l+        + +s+v++   d +++l      +  +Dli+a+ ++ +++ 
       CTQ28879.1 2588 SAERILEVGAGTAATTAPVLKAtrNTRQSYHFTDVSA--QFLNDARSR--FHDESQVSYALFDINQPLDFTAHPEAGYDLIVAVNVLHDASH 2675
                       67899*******9988776666334888899999875..455554333..56899*************777777888**************9 PP

  Methyltransf_16  136 lelLvkvLkellkkeskvlva 156 
                       + + ++ Lk llk+ + +l++
       CTQ28879.1 2676 VVQTLRRLKLLLKAGGRLLIV 2696
                       999999999999998885554 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.091        63      65     168 ..    1091    1200 ..    1063    1243 .. 0.80
   2 !   17.1   0.0   3.8e-06    0.0026      60     168 ..    2586    2699 ..    2560    2711 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.091
                      EEEEET-TTSHHHHHHH...HH-TT-EEEEEE-HHHHHH.HHHHS-----TTEEEEES-TTTS-----......SEEEEESSGGGS-HHHHHH CS
  Methyltransf_2   65 slvDvGGGtGalakaiv...sayPtikvivfDlpeVvea.AkehlsageeervefvgGdffkdslPea......DaillkrvlhDwsdekcvk 147 
                      ++++vGGGtG + +      +  P ++    D++   ++ A+++  ++  + v++ + d+ k++  ++      D+i+ ++v+h  +  ++ +
      CTQ28879.1 1091 RILEVGGGTGGTTAWLLpelNGVPALEYHFTDISALFTRrAQQK--FADYDFVKYSELDLEKEAQSQGfqaqsyDLIVAANVIH--ATRHIGR 1179
                      6889****998888775111456888888889988765515555..77778899999999888765433334559999999998..6788999 PP

                      HHHHHHHH--TT-EEEEEE-- CS
  Methyltransf_2  148 lLkrvkkalpagGkvivveav 168 
                       L++++  l++gG++++ e  
      CTQ28879.1 1180 TLDNLRPLLKPGGRLLMREIT 1200
                      9*************9998876 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3.8e-06
                      GGG-SEEEEET-TTSHHHHHHHHH-TT-EEE..EEE-.HHHHHHHHHHS-----TTEEEEES-TTT....S-----..SEEEEESSGGGS-HH CS
  Methyltransf_2   60 leglkslvDvGGGtGalakaivsayPtikvi..vfDl.peVveaAkehlsageeervefvgGdffk....dslPea..DaillkrvlhDwsde 143 
                      l + +++++vG Gt a+ + + +a  + + +    D+ ++  ++A++++  + e++v++   d+ +     + Pea  D+i+ ++vlhD s  
      CTQ28879.1 2586 LCSAERILEVGAGTAATTAPVLKATRNTRQSyhFTDVsAQFLNDARSRF--HDESQVSYALFDINQpldfTAHPEAgyDLIVAVNVLHDAS-- 2674
                      7778899999999999999999988777654114477346788999995..5556666655555411111455876669*********987.. PP

                      HHHHHHHHHHHH--TT-EEEEEE-- CS
  Methyltransf_2  144 kcvklLkrvkkalpagGkvivveav 168 
                      ++v+ L+r+k  l+agG++++vea 
      CTQ28879.1 2675 HVVQTLRRLKLLLKAGGRLLIVEAT 2699
                      69*********************96 PP

>> Methyltransf_28  Putative S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0033       2.3      12      72 ..    1082    1137 ..    1072    1160 .. 0.82
   2 ?    5.5   0.0     0.017        12      19      74 ..    2589    2638 ..    2572    2697 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0033
  Methyltransf_28   12 algrpskklrliElGpGkGtLmadvLrtlrkflpefyealeyhlvEaSpqlrerQknrLke 72  
                       ++ +p+++lr++E+G+G+G   a +L +l+   p+    leyh  ++S+   +r +++ ++
       CTQ28879.1 1082 QTRQPRQPLRILEVGGGTGGTTAWLLPELNGV-PA----LEYHFTDISALFTRRAQQKFAD 1137
                       55578899**********************99.77....8********9888887777665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.017
  Methyltransf_28   19 klrliElGpGkGtLmadvLrtlrkflpefyealeyhlvEaSpqlrerQknrLkeka 74  
                         r++E+G+G+ +  a vL+++r++  +     +yh  ++S+q  +  ++r ++++
       CTQ28879.1 2589 AERILEVGAGTAATTAPVLKATRNT-RQ-----SYHFTDVSAQFLNDARSRFHDES 2638
                       359**********************.44.....79999999998888888887754 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00094      0.65       1     103 [.    1093    1196 ..    1093    1199 .. 0.82
   2 ?    1.4   0.1      0.93   6.4e+02       1     102 [.    2593    2694 ..    2593    2696 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00094
  Methyltransf_24    1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalareaglddr..vrlikadseeala..slaagsiDllf.iDgghaaeavled 87  
                       +E+G   G +t+wll  l+   a +++  d  +    +++ a++ +++d+  v+  + d+e++++  +++a+s+Dl++     ha+++  + 
       CTQ28879.1 1093 LEVGGGTGGTTAWLLPELNGVPALEYHFTDISA---LFTRRAQQ-KFADYdfVKYSELDLEKEAQsqGFQAQSYDLIVaANVIHATRHIGRT 1180
                       799999**********9999999999**99999...77777777.44444447777778877666336669****98735889********* PP

  Methyltransf_24   88 leallprlapggvvlf 103 
                       l++l+p+l+pgg +l+
       CTQ28879.1 1181 LDNLRPLLKPGGRLLM 1196
                       ************9886 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.93
  Methyltransf_24    1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalareaglddrvrlikads......eealasla..agsiDllf.iDgghaaea 83  
                       +E+G+    +t+ +l+a r++++ +++  d  +   ++ + ar+  ++d  ++  a +      + +    a  +  +Dl++ +   h+a++
       CTQ28879.1 2593 LEVGAGTAATTAPVLKATRNTRQ-SYHFTDVSA---QFLNDARS-RFHDESQVSYALFdinqplDFT----AhpEAGYDLIVaVNVLHDASH 2675
                       57776667777777777777775.777777777...33333332.3333333332222111110322....133456886544999****** PP

  Methyltransf_24   84 vledleallprlapggvvl 102 
                       v + l+ l  +l+ gg +l
       CTQ28879.1 2676 VVQTLRRLKLLLKAGGRLL 2694
                       ******9999999999776 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.7   1.2e+03      75      97 ..     632     654 ..     618     664 .. 0.77
   2 ?   11.3   0.0   0.00022      0.15      62     199 ..    2958    3101 ..    2935    3105 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.7
  Hydrolase_4  75 elplfllGhSmGGliallyllry 97 
                   +p f +GhS+G + a+ ++ +y
   CTQ28879.1 632 LKPDFAIGHSVGEFAAAVVCGHY 654
                  4589********99999888665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00022
  Hydrolase_4   62 laafvekvkeehpelplfllGhSmGGliallyl.lrypdkva.glilsaPalkikaklkappllklllkllgkllpklqvsnnlkad.slsrdpev 154 
                   ++++v  +++++p+ p +l G S G+++a+ ++   y++  + +++l+ P+++ +      +  ++ll+ll++    l ++++ + +   s+  ++
   CTQ28879.1 2958 IDEYVGCIRRQQPHGPYVLAGWSYGAFLAAGAAqRLYAKGEQvRMVLIDPVCRQDFCC---ENRAALLRLLAEGQTPLALPEHFDQQtPDSQLADF 3050
                   4456677899***********************6445554556*********987433...33333444444444444443433333033444556 PP

  Hydrolase_4  155 vaayeadplvhgkitvrlllelldamkrleeraakit......lPllllhG 199 
                   + + ++  +v++++t++ + + ld +++l++  ++ t      +P+l++++
   CTQ28879.1 3051 ISLAKTAGMVSQNLTLQAAETWLDNIAHLLRLLTEHTpgesvpVPCLMVYA 3101
                   666666666688888888888888888888888777777777777777776 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.005       3.4      18      59 ..    1076    1117 ..    1062    1142 .. 0.90
   2 ?    3.7   0.0     0.038        26      31      54 ..    2589    2612 ..    2578    2641 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.005
                  HHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE- CS
      RrnaAD   18 vineIldklnleekltvleigpGkGilTeeLakrakqvvvlE 59  
                  v+ +I+++ ++++ l +le+g G+G +T+ L+  ++ v +lE
  CTQ28879.1 1076 VLRGIVQTRQPRQPLRILEVGGGTGGTTAWLLPELNGVPALE 1117
                  7899**************************999988888888 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.038
                  TSEEEEES-TTTCCHHHHHCC-SE CS
      RrnaAD   31 kltvleigpGkGilTeeLakrakq 54  
                     +le+g+G++++T++++k  ++
  CTQ28879.1 2589 AERILEVGAGTAATTAPVLKATRN 2612
                  578***************998865 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00013     0.087       2     118 ..    1561    1689 ..    1560    1700 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
                  EEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHHHH....T-SEEEE--S.---HHHHHHSH... CS
   Epimerase    2 lVtGatGfiGsalvkallekgye.vigldrlssasntarledl.....elveldltdrsalerlfkee....qpdavihlAa.vggvaassedp... 84  
                  lVtGa G +G+  v+ l ekg + +  l+ +  ++ + r  d+     +++++d+ d+ +l+ ++++     ++   ih+A+  ++ + +  d    
  CTQ28879.1 1561 LVTGAFGGLGRLAVNWLREKGARrIALLAPR-VDESWLR--DVeggqtRVCRCDVGDAGQLATVLDDLaangGIAGAIHAAGvLADAPLQELDDhql 1654
                  8********************8846666666.4444443..4446999***********88888877511125667899999888877776655111 PP

                  HHHHHHHTHHHHHHHHHHHHHTCTEEEEEEE.GGG CS
   Epimerase   85 adfieknlqgtlnlleaarkagvkrllflsS.sev 118 
                  a+++   +q + +ll+ +r ++ + l+  sS +++
  CTQ28879.1 1655 AAVFAVKAQAASQLLQTLRNHDGRYLILYSSaAAT 1689
                  5667799999***********99866666662444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 1.41u 0.29s 00:00:01.70 Elapsed: 00:00:00.51
# Mc/sec: 18779.71
//
Query:       CTQ28880.1  [L=386]
Description: Thiazolinyl-S-HMWP1 reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-24   86.3   0.0    5.3e-24   85.3   0.0    1.5  1  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0     3e-28   5.3e-24       2     119 ..      30     146 ..      29     147 .. 0.97

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 3e-28
                   EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-G....GGHHHHHHHHHHTT-EEEEESS CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpn....gtheelakaaleagkhvllEKP 94 
                   rv+i+Ga k+g+++l++++++ +++e+v+ll ++++r++++a++fg++ y++ e++ +   +d++++++++    gt+ +la+++l +g+hv++E+P
    CTQ28880.1  30 RVLIVGA-KFGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITK--MPDIACIVVRStvagGTGTQLARHFLTRGVHVIQEHP 123
                   89*****.**************************************************..778888888888899********************** PP

                   S-SSHHHHHHHHHHHHHHTS-EEEE CS
  GFO_IDH_MocA  95 lattveeakelvelaekkgklvsvg 119
                   l  +++++  l++la+++g+ ++v+
    CTQ28880.1 124 L--HPDDISSLQTLAQEQGCCYWVN 146
                   *..*******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2903.91
//
Query:       CTQ28881.1  [L=267]
Description: putative anguibactin biosynthesis thioesterase AngT [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-67  225.6   0.2      1e-66  225.4   0.2    1.0  1  Thioesterase     Thioesterase domain
    1.2e-05   26.0   8.1    2.3e-05   25.1   8.1    1.4  1  Abhydrolase_6    Alpha/beta hydrolase family
    0.00017   21.0   0.0     0.0014   17.9   0.0    2.0  2  Hydrolase_4      Serine aminopeptidase, S33
     0.0017   18.0   0.0      0.083   12.5   0.0    2.2  2  Abhydrolase_1    alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.015   15.2   0.0    1.4  1  Abhydrolase_3    alpha/beta hydrolase fold
       0.12   12.2   0.0       0.17   11.6   0.0    1.2  1  Abhydrolase_2    Phospholipase/Carboxylesterase
       0.18   10.7   0.0       0.29   10.0   0.0    1.2  1  Chlorophyllase2  Chlorophyllase enzyme


Domain annotation for each model (and alignments):
>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.4   0.2   3.9e-70     1e-66       2     228 ..      20     249 ..      19     252 .. 0.96

  Alignments for each domain:
  == domain 1  score: 225.4 bits;  conditional E-value: 3.9e-70
                   EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST..SHHHCTTCHHHHHHHHHHHHHHH-SSS.SEEEEEETHHHHHHHHHHHHHHHCT-SEE CS
  Thioesterase   2 pLflfppagGsasvfrslasklsdpvvevlavqlpgre..rdepplesieelaaeyaealrqiqpeg.PyalfGhSlGgllAfevArqLesqGlavk 95 
                   +L+++p+agGs+s+fr+++++  ++ ++++ v++pgr+  r+ +pl+si++laa +a++l+++   + P+ l+GhS+G+++Afe++r Le++Gla++
    CTQ28881.1  20 HLVMCPFAGGSSSAFRHWQAEQLAD-CALSLVTWPGRDrlRHLEPLRSITQLAALLANELEASVSPDtPLLLAGHSMGAQVAFETCRLLEQRGLAPQ 115
                   89**********************8.***********************************9887777***************************** PP

                   EEEEESCCCCCCHHCHHCCCHTTHHTHHHHHCCTTHHHCCTTTHCCHHHHHHHHHHHHHHHHHTCCS......-TTSCSEHHCEEEEEEGSS-CTCC CS
  Thioesterase  96 slflidssapseteaqeasrraedeefveeltdlggtepeelledeellsellpalradyraleqys......lrpeaaqklratlfngsddklkdl 186
                   +l++++++ap+ +++++ s+r++ + f++el d+gg+ ++el+e++el+s +lp+lrad+ a+e+y+      ++p++++   a l++gs+d+++++
    CTQ28881.1 116 GLIISGCHAPHLHSERQLSHRDDAD-FIAELIDIGGC-SPELRENQELMSLFLPLLRADFYATESYHydspdvCPPLRTP---ALLLCGSHDREASW 207
                   *************************.**********8.******************************************...************** PP

                   CCCCCHCHCHCTCESCEEEEEESSHCCHHHS.HH..HHHHHHHHH CS
  Thioesterase 187 dtlelaerweqktsgevsvhvlegdhfylle.dr..leavleiie 228
                   +  + ++ w+q+ s+ +   v++gdhfy ++  r   +++++++ 
    CTQ28881.1 208 Q--QVDA-WRQWLSHVTGPVVIDGDHFYPIQqARsfFTQIVRHFP 249
                   *..8999.***********************65567888888875 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   8.1     9e-09   2.3e-05       6     211 ..      28     234 ..      21     251 .. 0.47

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 9e-09
                    -GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT......TTSEEEEEETCHHHHHHHHHHCC..........E CS
  Abhydrolase_6   6 GagssassWlvapLaallaagvhvlapDlpGhGrsdpppldledladlaalldelaa....gggpvvlvGHSlGGalalaaapla........lvv 89 
                    G  +s+s+++  +++a   a+++   + +pG   + ++   l+ + +laall+ + +     + p  l GHS+G+ +a +    +           
     CTQ28881.1  28 G--GSSSAFR--HWQAEQLADCALSLVTWPGRD-RLRHLEPLRSITQLAALLANELEasvsPDTPLLLAGHSMGAQVAFE---TCrlleqrglAPQ 115
                    4..6678886..77666678888888******5.67777777777777887777777798666666**************...6622243333222 PP

                    EEEES-..----TTTS----TTHHHHHHTT-CCCCHCCH..........S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEE CS
  Abhydrolase_6  90 gvlldppptalpagllaaalelllallallrllawlsre..........plprlfladedadaawrarlarlaallaglgllpaaawadlpvpllv 175
                    g+++++    + a+ l+  ++l ++  a +++   + ++          +++ lfl+        ++ +a+ +       + +++  ++l++p l+
     CTQ28881.1 116 GLIISG----CHAPHLHSERQLSHRDDADFIAELIDIGGcspelrenqeLMS-LFLP-----LLRADFYATESYH-----YDSPDVCPPLRTPALL 196
                    233333....222222222222222222222211111111111111111111.2222.....1111111111111.....2223333333333355 PP

                    EC.TT-C...HHHHCHHCCCH.STTEEETCE...SSS-HHH CS
  Abhydrolase_6 176 lg.geDp...lvprllerlla.qagarlpvvlpgaGHlphl 211
                    l+ + D+   + +  ++++ + + +++   v+ +++H++ +
     CTQ28881.1 197 LCgSHDReasWQQ--VDAWRQwLSHVTG-PVVIDGDHFYPI 234
                    5424455433222..4444443344444.556667775544 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.6e-07    0.0014      70     108 ..      79     121 ..      56     146 .. 0.79
   2 ?    0.6   0.0      0.11   2.8e+02     190     203 ..     190     203 ..     182     218 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.6e-07
  Hydrolase_4  70 k.eehpelplfllGhSmGGliallyl..lrypd.kvaglilsa 108
                  + + +p++pl l GhSmG+ +a++ +  l+++    +gli+s+
   CTQ28881.1  79 EaSVSPDTPLLLAGHSMGAQVAFETCrlLEQRGlAPQGLIISG 121
                  43678999******************86444444666999997 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.11
  Hydrolase_4 190 itlPllllhGeaDk 203
                  +++P lll+G++D+
   CTQ28881.1 190 LRTPALLLCGSHDR 203
                  689**********8 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.022        56      71      91 ..      84     104 ..      65     110 .. 0.81
   2 !   12.5   0.0   3.2e-05     0.083     186     252 ..     172     232 ..     156     237 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.022
                    TTSSEEEEEETHHHHHHHHHH CS
  Abhydrolase_1  71 gddkltlvGhSmGGmialaya 91 
                    +d +l l GhSmG ++a++ +
     CTQ28881.1  84 PDTPLLLAGHSMGAQVAFETC 104
                    46667799*******999765 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.2e-05
                    HHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSH CS
  Abhydrolase_1 186 lksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHla 252
                    +++  + + +ds  ++  lr       p+l+++g++D+ +++++ + ++q+l++++  v+ d+ H+ 
     CTQ28881.1 172 DFYATESYHYDSPDVCPPLRT------PALLLCGSHDREASWQQVDAWRQWLSHVTGPVVIDGDHFY 232
                    556666677888888888999......******************************9999999985 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   5.8e-06     0.015      56     123 ..      70     134 ..      32     224 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.8e-06
                    HHHHHHTHHHHTETTC.EEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE-SSTSSTTSHHHHHC CS
  Abhydrolase_3  56 lrwlaeqawelgadps.rivlaGdSaGGnlaaavalrardegepkvagqvliyPvtdlertesesikka 123
                    l  l++++ e+++ p+  + laG S G++ a  +++ + ++   ++a q li  +  + ++ +++++++
     CTQ28881.1  70 LAALLANELEASVSPDtPLLLAGHSMGAQVAFETCRLLEQR---GLAPQGLIISGCHA-PHLHSERQLS 134
                    5566677668888777699*********************9...56777777776544.3333333222 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.7e-05      0.17      85     141 ..      65     125 ..      59     142 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.7e-05
                    HHHHHHHHHHHHHHHTT--GG.GEEEEEETHHHHHHHHHHHT-SS...--SEEEEES---T CS
  Abhydrolase_2  85 ksaekleelidaelkkgipss.riiigGFSqGaalalylaltlpk...klggivafsgalp 141
                    +s+++l +l+ +el++++  +   ++ G S+Ga +a +++  l++     +g ++ ++ +p
     CTQ28881.1  65 RSITQLAALLANELEASVSPDtPLLLAGHSMGAQVAFETCRLLEQrglAPQGLIISGCHAP 125
                    68999************7665168999************9777664433345555555544 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00011      0.29      71     106 ..      68     102 ..      52     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
  Chlorophyllase2  71 nWlakgLesvlpeevepdlsklalsgHSrGgktafa 106
                      + la+ L++ l+ +v+pd   l l+gHS G+++af+
       CTQ28881.1  68 TQLAALLANELEASVSPDT-PLLLAGHSMGAQVAFE 102
                      4577778889999999996.588***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2084.55
//
Query:       CTQ28882.1  [L=525]
Description: 2,3-dihydroxybenzoate-AMP ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-79  265.0   0.0    1.1e-78  264.7   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    6.3e-15   55.9   0.2    9.1e-14   52.2   0.0    2.7  3  AMP-binding_C  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
      0.046   12.6   0.0        7.7    5.2   0.0    2.1  2  GH3            GH3 auxin-responsive promoter


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.7   0.0   1.9e-82   1.1e-78       2     422 ..      21     422 ..      20     423 .. 0.87

  Alignments for each domain:
  == domain 1  score: 264.7 bits;  conditional E-value: 1.9e-82
                  HHHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE CS
  AMP-binding   2 eeqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli 99 
                  +++aa++  ++a+vd     +lTY+ ld++v++lAagL slG+++g++V + lpn   +v +l+a+l++G+++v   p+ +a ++  ++e +++ + +
   CTQ28882.1  21 RHWAARYASRIAVVD--AKGSLTYSALDAQVDELAAGLSSLGLRSGEHVIVQLPNDNAFVTLLFALLRLGVIPVLAMPSQRALDIDALIELAQPVAYV 116
                  7899***********..999****************************************************************************** PP

                  ETCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHC CS
  AMP-binding 100 atvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletr 196
                    ++ e+ +e +++ a+k    ++v+v  +  +++ +++ +  +++++       ++++ + +a+++ ++GTTG+PK +  +h+ +++n ++   e +
   CTQ28882.1 117 --IHGENhAELARQMAHKHACLRHVLVAGETVSDDFTPFFSLHGERQA------WPQPDVSATALLLLSGGTTGTPKLIPRRHADYSYNFSAS-AELC 205
                  ..7777755555555555566666665555555555555554444433......33678899*********************9999997774.3444 PP

                  SCCTTT-EEEESS-TTSCHH.HHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS CS
  AMP-binding 197 fklkeddvvlsilplahifg.lilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllgge 293
                    +++++v+l++lp+ah f   + ++l++l++G++vvl +  +  d   ++ li++++vt++a+vP++++ ++++++ +    ++dlsslr++ +gg+
   CTQ28882.1 206 G-ISQQSVYLAVLPVAHNFPlACPGILGTLACGGKVVLTDSASC-D--EVMPLIAQERVTHVALVPALAQLWVQAREWE----DSDLSSLRVIQAGGA 295
                  3.46789************9434689************886655.3..4679**********************86665....66************* PP

                  -EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-T.TEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEE CS
  AMP-binding 294 plspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplp.gvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafd 390
                  +l p+l++++ a+f +++ +++G++E + ++t   ++ + + l s+G+pl    e++ivD++ ++ v++ge+G+ll rgp + +gY++ p+ +a+af+
   CTQ28882.1 296 RLDPTLAEQVIATFDCTLQQVFGMAEGLLCFT-RLDDPHATILHSQGRPLSpLDEIRIVDQD-ENDVAPGETGQLLTRGPYTISGYYRAPAHNAQAFT 391
                  *******************************9.666888899*******9659********9.8999******************************9 PP

                  ETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 391 segrwlrTGDlgrldedGyleivgRkkdlikl 422
                  ++ +++rTGD +rlde G+l++ gR+k++i++
   CTQ28882.1 392 AQ-GFYRTGDNVRLDEVGNLHVEGRIKEQINR 422
                  55.7***********99*************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.4   1.4e+04      42      60 ..      16      34 ..      10      37 .. 0.73
   2 ?    0.2   0.1      0.25   1.5e+03      28      63 ..     111     139 ..     104     146 .. 0.64
   3 !   52.2   0.0   1.5e-17   9.1e-14       1      76 []     431     506 ..     431     506 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
                   HHHHHHHHHHHHT-TTTS- CS
  AMP-binding_C 42 leeeLkahvrkelgpyavp 60
                   ++e+L+ ++++    +av 
     CTQ28882.1 16 IAEQLRHWAARYASRIAVV 34
                   6788999998877777765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.25
                    --EEEEEE------HHHHHHHHHHHHT-TTTS-SEE CS
  AMP-binding_C  28 alvafVvlkdgsealeeeLkahvrkelgpyavpkkv 63 
                     +va+V+  +++    +eL ++++++   +a+ ++v
     CTQ28882.1 111 QPVAYVIHGENH----AELARQMAHK---HACLRHV 139
                    689999983333....6666665443...5666665 PP

  == domain 3  score: 52.2 bits;  conditional E-value: 1.5e-17
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHH.HHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahv.rkelgpyavpkkvvfvdelpktrsGK 76 
                    evEsal++  +V+++aVv+ pd + Ge+++af++ + +++   ++L++++ r  l +++ p++++f+d  p+t+ GK
     CTQ28882.1 431 EVESALLRLAEVQDCAVVAAPDTLLGERICAFIIAQ-QVPTDYQQLRQQLtRMGLSAWKIPDQIEFLDHWPLTAVGK 506
                    8*********************************94.3233469******555***********************9 PP

>> GH3  GH3 auxin-responsive promoter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0014       8.6      77     101 ..     172     195 ..     167     219 .. 0.77
   2 ?    5.2   0.0    0.0013       7.7     373     425 ..     396     443 ..     391     454 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0014
                 SEEEEECCEETTEEEEEEESHHHHH CS
         GH3  77 klfalsSGTtsgksKliPvteeslk 101
                  l++ls GTt g +KliP  +  ++
  CTQ28882.1 172 ALLLLSGGTT-GTPKLIPRRHADYS 195
                 6789999***.*******8776554 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0013
                 EEECEEEEEEEEETTEEEEEEEECCTEEE-SSSS-CCHHHHHHHHH.HHHHHT CS
         GH3 373 YrigDvvrvtgfynkaPrleFvgRknvvlsidgeklteeelqkaveeaakelt 425
                 Yr+gD vr  ++      l++ gR ++ ++  gek+   e+++a+ + a+  +
  CTQ28882.1 396 YRTGDNVRLDEV----GNLHVEGRIKEQINRAGEKIAAAEVESALLRLAEV-Q 443
                 6799*9999998....679**************************966654.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4054.59
//
Query:       CTQ28883.1  [L=673]
Description: Pesticin receptor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-48  165.9  26.8    3.7e-48  165.6  26.8    1.2  1  TonB_dep_Rec  TonB dependent receptor
    8.8e-15   55.2   1.9    1.8e-14   54.2   1.9    1.5  1  Plug          TonB-dependent Receptor Plug Domain
    5.5e-07   28.9   2.2      7e-06   25.3   0.4    2.6  2  OMP_b-brl_3   Outer membrane protein beta-barrel family
     0.0014   18.8   3.8     0.0043   17.2   3.8    1.9  1  OMP_b-brl     Outer membrane protein beta-barrel domain
  ------ inclusion threshold ------
       0.11   12.5   3.1          2    8.4   0.2    2.6  2  DUF481        Protein of unknown function, DUF481


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.6  26.8     1e-51   3.7e-48      15     468 ..     223     669 ..     157     671 .. 0.74

  Alignments for each domain:
  == domain 1  score: 165.6 bits;  conditional E-value: 1e-51
                   EEEEEEEEEEETTTTEEEEEEE......................EEEEEEEEEECCCEECCC..........EEECECCEEEEEEEEEEEEEEEEEE CS
  TonB_dep_Rec  15 lanngdylrytdggdlgsalsr......................gylgtnplyygdnysetd..........nkrlrlgydydlddnlswklslrag 79 
                   ++   +  ++++++  g+a sr                           +           d          +++++l+  y+ +d+  w   +++ 
    CTQ28883.1 223 GNVKLRLAPDDQPWEMGFAASRectratqdayvgwndikgrklsI----S-----------DgspdpymrrcTDSQTLSGKYT-TDD--W--VFNLI 299
                   455556666666666666666666666666444333333211110....1...........1222233333488888888888.777..9..77766 PP

                   EEEEEEEEEEEEEEEEEEE..EEEEEEEECEEEEEEEEEEEEEEEEEEE....EEEEEEEEEEEEE.EEEEECCBEESCCTC.CSEEEEEEEEEEEE CS
  TonB_dep_Rec  80 lnYsstdgdsdynnsglgg..grsynrdndyyglgnvlaaeldlngdlw....fGsnladgldyrk.lsddgydaydplnps.gdasdsvdrdsygl 168
                    ++++++ + ++++++l    +++ n+d +           ++l+   +    fG        yr+ ++ + ++ayd ++    +++++++++++++
    CTQ28883.1 300 SAWQQQHYSRTFPSGSLIVnmPQRWNQDVQELR-------AATLGDARTvdmvFG-------LYRQnTREKLNSAYDMPTMPyLSSTGYTTAETLAA 382
                   678855555555555333323333333332222.......111211111222366.......34432333333333333333466777779999999 PP

                   EEEEEEEEETTEEEEEEEEEEEETTCSSSS..........EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEECCCCCEEEECS CS
  TonB_dep_Rec 169 yaqdnikltdrltltlGlRydhysvfgkdlrag.......afsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggsngaggalsngn 258
                   y +++++ltdr+++ +G+R+ h + +++++++        + ++++++++ +++++y +tdd++++  +++g++ Ps +++ +      ++ l    
    CTQ28883.1 383 YSDLTWHLTDRFDIGGGVRFSHDKSSTQYHGSMlgnpfgdQGKSNDDQVLGQLSAGYMLTDDWRVYTRVAQGYK-PSGYNIVP------TAGLDAKP 472
                   ********************9999998888888***9999999999****************************.********......45555544 PP

                   TT---EEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEESSSSCSTTTCSEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECECEEE CS
  TonB_dep_Rec 259 pdLkPEtsknyelGlkldddrlnltlayFridiknfittdpdgpslgglgdfqyqNvgkarikGvElelsyrltpgWglglsgggytYydagddsda 355
                     + +E+s nyelG ++   + +l++a F++++k+++ +++ ++       ++ +N+gka + GvEle+++r++pgW+++ +g+ +  ++  ++++ 
    CTQ28883.1 473 --FVAEKSINYELGTRYETADVTLQAATFYTHTKDMQLYSGPVGM------QTLSNAGKADATGVELEAKWRFAPGWSWDINGN-VIRSEF-TNDSE 559
                   ..999************************************9999......99*************************999***.663555.45689 PP

                   CTTTTSSTTEESEEEE..E.E...EEEECSEEEEEEEESEEEEEEECCSSEEEEECECCEEEE--EEEEEEEEEEEESSSEEEEEEEESTTETCSCE CS
  TonB_dep_Rec 356 ddggnplpnvPkhtan..l.g...ltYkfpaggWgaglllagarYvavggrrygdaantfrrvpgYtlldlslgYklpknltlslgvnNLfdkryya 446
                    + gn++p+vP++ a+  + g   ++Y       ga ++ ++++   vg+ +y+d++n++ r++ Y++ld slg++ ++++++s++v+NLfd+ry++
    CTQ28883.1 560 LYHGNRVPFVPRYGAGssVnGvidTRY-------GALMPRLAVNL--VGP-HYFDGDNQL-RQGTYATLDSSLGWQATERMNISVYVDNLFDRRYRT 645
                   9***************55322222444.......43332234455..599.*********.*******************************87777 PP

                   EESTT..TTTCCEB--SEEEEEEE CS
  TonB_dep_Rec 447 ssgyy..glggypgpgRtfrlglr 468
                   ++++   +  +   +gRt+ ++ r
    CTQ28883.1 646 YGYMNgsSAVAQVNMGRTVGINTR 669
                   777775444444455***998876 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   1.9   5.1e-18   1.8e-14       6     108 .]      48     149 ..      42     149 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 5.1e-18
                 SSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-G......GCSEEEETTEEESCCCCSCTCGCSSB.GGGEEEEEEEESSCH CS
        Plug   6 pgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgs......nrvlvlvDGvpianggsgagdlssid.pedierievlkGpas 97 
                   s +vv+a ++++ g+t  +++ + +pg+n+ +++g+  +s+is+RG++s       +v+++vDGvp       + ++++i  + d++++e+l+Gp+ 
  CTQ28883.1  48 NVSSTVVSAPELSDAGVTASDKLPRVLPGLNI-ENSGNMLFSTISLRGVSSaqdfynPAVTLYVDGVP-------QLSTNTIQaLTDVQSVELLRGPQG 138
                 456778**********9999999999******.***********************************.......68888887369************* PP

                 CTTSSTGSSEE CS
        Plug  98 alyGsdaigGv 108
                 +lyG +a gG+
  CTQ28883.1 139 TLYGKSAQGGI 149
                 *********96 PP

>> OMP_b-brl_3  Outer membrane protein beta-barrel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.02        70      19     118 ..     349     439 ..     334     444 .. 0.61
   2 !   25.3   0.4   1.9e-09     7e-06     216     383 ..     476     648 ..     474     669 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.02
  OMP_b-brl_3  19 nkndensditnedlnepdgaeptnnslqrndndqknneytfqlDYtnplskkgkleaGykysfrntdsdfkyenldngefvldpslsndfdykeninA 116
                  +++++ +++++  ++      pt  +l+ ++ +++ + + +  D t+ l++  ++ +G+ ++f++ +s ++y     g+   d+ +snd +   +  A
   CTQ28883.1 349 YRQNTREKLNSA-YD-----MPTMPYLS-STGYTTAETLAAYSDLTWHLTD--RFDIGGGVRFSHDKSSTQYHGSMLGNPFGDQGKSNDDQVLGQLSA 437
                  555555555443.32.....23333344.3455567778899999999988..555555555555555566555556777777777777777777777 PP

  OMP_b-brl_3 117 aY 118
                  +Y
   CTQ28883.1 438 GY 439
                  66 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 1.9e-09
  OMP_b-brl_3 216 eftnsfelgyskkwk.ltlslsyrytndniqitvitddnnnvllttyeNlgksqsyglelslslnptkwwslnanlnlyynkskidg........sln 304
                  e++ ++elg  +++  +tl++   yt++++ + +     + v  +t  N+gk +++g+el +++++++ ws+ +n n+  ++++ d+         + 
   CTQ28883.1 476 EKSINYELGTRYETAdVTLQAATFYTHTKDMQLY----SGPVGMQTLSNAGKADATGVELEAKWRFAPGWSWDINGNVIRSEFTNDSelyhgnrvPFV 569
                  67789*******9877888888888888875544....6778899999*************************9999998777776622222221222 PP

  OMP_b-brl_3 305 sdvsnkg.fswnlnntft.lpkkislqlngfyrspqvtaqgkrkafysvdlglsksflkkkltlslnvnDifntrkrrstt 383
                   ++++ + ++  + +++  l   + ++l g         q ++  + ++d +l  +   +++++s+ v+++f++r+r+   
   CTQ28883.1 570 PRYGAGSsVNGVIDTRYGaLMPRLAVNLVGPHYFDGD-NQLRQGTYATLDSSLGWQA-TERMNISVYVDNLFDRRYRTYGY 648
                  2333322112223444423666777777776655554.5788888888888888887.68999999999999988765443 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   3.8   1.2e-06    0.0043      20     159 ..     392     554 ..     375     569 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-06
   OMP_b-brl  20 ggfyvggglglskvkv...............dgvgsdsgfgfgvgagyefndnvgvegglsy.sgdkdysgsgktdikinlls....vpvnagyafnls 98 
                  +f +ggg+ +s+ k+                g  +d+ + ++++agy+++d ++v+ ++++ ++   y+  +++  + + +     + + +g ++ ++
  CTQ28883.1 392 DRFDIGGGVRFSHDKSstqyhgsmlgnpfgdQGKSNDDQVLGQLSAGYMLTDDWRVYTRVAQgYKPSGYNIVPTAGLDAKPFVaeksINYELGTRYETA 490
                 67999***9999666666889999988887333455556999******************986555666666444444444433466888899999999 PP

   OMP_b-brl  99 dsvlpyggaGlgytkvevdvsgng....asdsdtdfglglgaGveyaladnwslkaeYrytdlks 159
                 d v + +   +++tk    +sg       s+++++ + g+++ ++ ++a++ws +++ +++  + 
  CTQ28883.1 491 D-VTLQAATFYTHTKDMQLYSGPVgmqtLSNAGKADATGVELEAKWRFAPGWSWDINGNVIRSEF 554
                 9.788888888887554447777689999*********************999888877765544 PP

>> DUF481  Protein of unknown function, DUF481
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2   0.00055         2      40      81 ..     368     409 ..     337     458 .. 0.78
   2 ?    4.1   0.2     0.012        42      13      80 ..     488     555 ..     476     668 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00055
      DUF481  40 ygesngettaekyrvslqydyklserlylfalgsyetDrfsg 81 
                 y +s+g ttae   ++ ++ ++l++r+ + + +++ +D+ s+
  CTQ28883.1 368 YLSSTGYTTAETLAAYSDLTWHLTDRFDIGGGVRFSHDKSST 409
                 5788899*******************************9874 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.012
      DUF481  13 ettslnaalklkrrtgrwrlslkaeyeygesngettaekyrvslqydyklserlylfalgsyetDrfs 80 
                 et ++++ + + +++++ ++ +++ +  ++  +  +a+ + v+l+ ++++ + +++ ++g+  + +f 
  CTQ28883.1 488 ETADVTLQAATFYTHTKDMQLYSGPVGMQTLSNAGKADATGVELEAKWRFAPGWSWDINGNVIRSEFT 555
                 566777777777777777777777777788888889************************99998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4744.14
//
Query:       CTQ28884.1  [L=78]
Description: exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 636.96
//
Query:       CTQ28885.1  [L=308]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.13   12.3   0.0        0.3   11.1   0.0    1.7  1  hnRNP_Q_AcD  Heterogeneous nuclear ribonucleoprotein Q acidic


Domain annotation for each model (and alignments):
>> hnRNP_Q_AcD  Heterogeneous nuclear ribonucleoprotein Q acidic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.7e-05       0.3      27      61 ..     170     203 ..     159     205 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.7e-05
  hnRNP_Q_AcD  27 raleaLkslpeegAlaVlkqfkesdlskvsNksay 61 
                  r+  +++ lp++ Al V+k++ e++  k+ N + +
   CTQ28885.1 170 RVEKQISRLPKNTALDVIKKLTEVTTIKY-NHNGC 203
                  56678899*****************9995.55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2362.31
//
Query:       CTQ28886.1  [L=61]
Description: Recombination directionality factor, SLP1 family (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.3e-26   89.6   0.2    9.4e-26   89.4   0.2    1.1  1  Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
     0.0003   20.9   0.1    0.00036   20.7   0.1    1.2  1  HTH_17      Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.2     1e-29   9.4e-26       2      51 .]       5      54 ..       4      54 .. 0.98

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 1e-29
  Phage_AlpA  2 rilrlreVeqktglsrstiYrlikdgeFPkkvkLGvrsVgWlesEIdeWi 51
                ++lrlr+Veqktgl+rs+iY ++k+g FP+++k+G+ sV+WlesEIdeWi
  CTQ28886.1  5 QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWI 54
                68***********************************************8 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1     4e-08   0.00036       1      50 [.       6      57 ..       6      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4e-08
      HTH_17  1 lltveEaAelLgvsrstvyrlirrgelpaa.kiGrr.wriprsdleewlekr 50
                ll   ++ +  g++rs +y + ++g +p   kiG   +   +s+++ew++k+
  CTQ28886.1  6 LLRLRQVEQKTGLKRSQIYLYMKEGAFPRSiKIGPAsVAWLESEIDEWINKK 57
                57788999999****************8889855444************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 496.06
//
Query:       CTQ28887.1  [L=60]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       186  (0.0103743); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 522.89
//
Query:       CTQ28888.1  [L=193]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-63  213.1   0.0    2.6e-63  212.9   0.0    1.0  1  DUF2857   Protein of unknown function (DUF2857)


Domain annotation for each model (and alignments):
>> DUF2857  Protein of unknown function (DUF2857)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.9   0.0   1.5e-67   2.6e-63       1     174 [.       6     182 ..       6     183 .. 0.98

  Alignments for each domain:
  == domain 1  score: 212.9 bits;  conditional E-value: 1.5e-67
     DUF2857   1 nqavLtqllellkeGdlrrceelGfseeeldaLkqlsledlhalsnsrvsvlkvsvdhealrrlLkqareeeereelidralrlGAsiellaklFglts 99 
                 n+++Lt +l++l+eG++++ce++Gf+ +e++ L  ls++dl +ls+++ ++++++++h++l++lL++++ee++r+e+++ra+rlG+si+l++++Fg+ s
  CTQ28888.1   6 NHIILTVALQALREGNIHHCETMGFTYDEMNLLGCLSINDLITLSQAPLPLVDITIRHDVLQKLLASSHEENRRQEQLNRAVRLGGSIALMNRYFGVGS 104
                 6889*********************************************************************************************** PP

     DUF2857 100 kevaarRrllglekrkGRppaldeeeeaeiwraWqailgveeldstealdlmmsvaeelei....sLtviWklvqewed 174
                 +e++arRrllg+++++GR+p++dee++a+iw++Wq++ +ve+ ds+eald+mm+v+e+l+     sLtv+W++++++e+
  CTQ28888.1 105 RETCARRRLLGVSVPNGRTPIPDEETDAAIWHQWQKY-RVENIDSPEALDAMMQVTENLSActapSLTVVWNCITHCER 182
                 *************************************.9********************888888************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1469.52
//
Query:       CTQ28889.1  [L=69]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-11   42.2   0.6    5.4e-11   42.2   0.6    1.6  2  zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
  ------ inclusion threshold ------
      0.013   15.6   0.7      0.016   15.2   0.7    1.1  1  HypA          Hydrogenase/urease nickel incorporation, metall
      0.013   15.5   2.9      0.013   15.5   2.9    2.1  2  DUF2116       Uncharacterized protein containing a Zn-ribbon 
       0.03   14.3   2.6      0.093   12.8   2.6    1.8  1  DZR           Double zinc ribbon
      0.049   13.1   0.6        5.3    6.6   0.1    2.3  2  zf-ribbon_3   zinc-ribbon domain
        0.1   12.5   2.1       0.21   11.5   1.2    2.0  1  C1_1          Phorbol esters/diacylglycerol binding domain (C
       0.15   10.6   0.5       0.17   10.5   0.5    1.1  1  AAA_13        AAA domain
       0.66   10.2   5.2        3.8    7.7   4.4    2.2  1  FYVE          FYVE zinc finger


Domain annotation for each model (and alignments):
>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       4.4   9.8e+03      26      29 ..      14      17 ..      13      19 .. 0.60
   2 !   42.2   0.6   2.4e-14   5.4e-11       2      36 .]      32      66 ..      29      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.4
  zf-dskA_traR 26 lCve 29
                  +C+e
    CTQ28889.1 14 RCLE 17
                  5655 PP

  == domain 2  score: 42.2 bits;  conditional E-value: 2.4e-14
  zf-dskA_traR  2 iygsCeeCGEpIpeaRlralPgarlCveCqekaer 36
                  ++ +C  CG+ Ipe+R++ lPg++ C +Cq+  e+
    CTQ28889.1 32 SLQHCRFCGKAIPEKRRQTLPGVTTCTDCQSILEK 66
                  6678**************************99886 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.7   7.3e-06     0.016      47      94 ..      10      62 ..       7      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.3e-06
                HHHHHHCC.TTTT-EEEEEEE--EEEETTTS-EEECHHHHH.....S-TTTSS CS
        HypA 47 afellaegtvlegaeLeieevpvkvrCreCgkefeleekal.....rCpkCgs 94
                af+  + + ++e+++L+ + +p   +Cr Cgk + ++++++     +C +C+s
  CTQ28889.1 10 AFNERCLEALIEQSRLRPTPTPSLQHCRFCGKAIPEKRRQTlpgvtTCTDCQS 62
                6777777888999*********************9877422366679****98 PP

>> DUF2116  Uncharacterized protein containing a Zn-ribbon (DUF2116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4   3.1e+03      21      28 ..      12      19 ..       4      26 .. 0.62
   2 ?   15.5   2.9   5.8e-06     0.013       4      33 ..      34      69 .]      32      69 .] 0.74

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
     DUF2116 21 sekCqeey 28
                 e+C e++
  CTQ28889.1 12 NERCLEAL 19
                57787766 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 5.8e-06
     DUF2116  4 kHCivCGkaIpldes.......fCsekCqeeyekkrk 33
                +HC  CGkaIp++ +       +C  +Cq+++ek+r+
  CTQ28889.1 34 QHCRFCGKAIPEKRRqtlpgvtTC-TDCQSILEKRRR 69
                6**********9864333333256.569999999986 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   2.6   4.1e-05     0.093      10      40 ..      31      66 ..       3      69 .] 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-05
         DZR 10 pdarfCseCgtklkavaa.....edrCpsCgekvdp 40
                p+ + C  Cg+++++  +      ++C  C++ +++
  CTQ28889.1 31 PSLQHCRFCGKAIPEKRRqtlpgVTTCTDCQSILEK 66
                566889999999986666999999999999998765 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0024       5.3      15      24 ..      32      41 ..      28      47 .. 0.74
   2 ?    5.0   0.1    0.0076        17      14      23 ..      52      61 ..      50      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0024
  zf-ribbon_3 15 ddnvCpyCGt 24
                 + ++C  CG+
   CTQ28889.1 32 SLQHCRFCGK 41
                 5578888886 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0076
  zf-ribbon_3 14 sddnvCpyCG 23
                 +++++C+ C+
   CTQ28889.1 52 PGVTTCTDCQ 61
                 799******7 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2   9.5e-05      0.21      10      38 ..      32      64 ..      22      67 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.5e-05
                S--B-TTT-SB--SSSS-EE....EETTT--EE CS
        C1_1 10 qptfCkhCgeflwgkekqgl....kCswCkllv 38
                + ++C  Cg+ + +k++q l    +C++C+ + 
  CTQ28889.1 32 SLQHCRFCGKAIPEKRRQTLpgvtTCTDCQSIL 64
                6789********5555554322248****9876 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.5   7.5e-05      0.17     255     273 ..      33      51 ..      28      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.5e-05
      AAA_13 255 sdtCpFCgqplpaerkaaL 273
                 +++C+FCg+ +p++r+++L
  CTQ28889.1  33 LQHCRFCGKAIPEKRRQTL 51 
                 589*************998 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.4    0.0017       3.8      26      38 ..      34      46 ..      28      68 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0017
                EE-TTT--EE-ST CS
        FYVE 26 hhCrlCGkvvCek 38
                 hCr CGk++ ek
  CTQ28889.1 34 QHCRFCGKAIPEK 46
                6*******99744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 586.97
//
Query:       CTQ28890.1  [L=42]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-14   54.3   0.0    1.4e-14   54.2   0.0    1.0  1  HHA       Haemolysin expression modulating protein


Domain annotation for each model (and alignments):
>> HHA  Haemolysin expression modulating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   7.5e-19   1.4e-14      20      57 .]       2      39 ..       1      39 [. 0.96

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 7.5e-19
                HHHS-HHHHHHHHHHHTHHHHHHHTTS---S--THHHH CS
         HHA 20 kyeltddEllefysAaDHRrAELvsgkLyDkvPksvWk 57
                +++lt++El  +y+AaD RrAE+v+++ +DkvP +vWk
  CTQ28890.1  2 EEKLTGNELEMLYAAADYRRAEIVMNQYFDKVPGNVWK 39
                789**********************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 370.12
//
Query:       CTQ28891.1  [L=55]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 436.58
//
Query:       CTQ28892.1  [L=77]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 629.23
//
Query:       CTQ28893.1  [L=236]
Description: VirB1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-18   64.8   0.0    7.4e-18   64.3   0.0    1.2  1  SLT       Transglycosylase SLT domain


Domain annotation for each model (and alignments):
>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   4.1e-22   7.4e-18       2     105 ..       8     143 ..       7     153 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 4.1e-22
                 HHHHHHHHHTS-HHHHHHHHHHHHTT-TT-B-....TTS.................................EBTTTTBETTTHHHHHHHHT-SHHHHC CS
         SLT   2 liikaekkygvepsllaaiaqvESgfnpkAvs....ksg.................................avGLmQimpstakrlglrvklsedell 63 
                 l+i+ +++ ++ ps+++ +a+vESgfnp+A+     k+g                                 +vGLmQi++ +++++g     s  ell
  CTQ28893.1   8 LAIAMQCAASIHPSTAFDVARVESGFNPYAIAeivpKAGpsfgdqhiishlpasrgdaehilrrlsaqdrrySVGLMQITSTNFRHYGV----SATELL 102
                 678899**************************888866688899999****************************************98....9***** PP

                 SHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH-HHHHHHTT CS
         SLT  64 dPeknisagakyLkslykqyngslllalaAYNaGegtvkkak 105
                 dP++n+s+   +L++ y++++  l +al+ Y +G + ++++ 
  CTQ28893.1 103 DPCTNLSVFEHILRDCYRRGG-TLKRALSCYYSGNFSTGQQP 143
                 *********************.**************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1891.08
//
Query:       CTQ28894.1  [L=97]
Description: putative type IV secretory pathway VirB2 component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-19   67.6   3.3      9e-19   67.5   3.3    1.0  1  TrbC      TrbC/VIRB2 family


Domain annotation for each model (and alignments):
>> TrbC  TrbC/VIRB2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   3.3     5e-23     9e-19       5      98 ..       4      94 ..       1      95 [. 0.93

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 5e-23
        TrbC  5 kskarrlllalalalvllllaspalAqaaggdpvetvlqnivdfltgplakviatiaiivaGimlafgrlswrtlvmvviGiviifgAssivst 98
                 +k++ ++  + ++++++++a+palA++   ++++tv+q++ + l+g la +++t+a+i++G++ +++++s+ ++++++iG+++i+g+s+i + 
  CTQ28894.1  4 FRKLKAVVPPVSACTLTTFSATPALADGF--QRANTVMQKVSTGLHG-LAAITITVAVIWIGYKTLWKGESLSQCGYIIIGGILIGGGSEIGAL 94
                567777888889999***********998..9***************.******************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 811.08
//
Query:       CTQ28895.1  [L=912]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-43  147.7   0.0      1e-42  146.6   0.0    1.6  1  CagE_TrbE_VirB  CagE, TrbE, VirB family, component of type IV
    1.1e-13   51.1   4.7    2.7e-13   50.0   4.7    1.6  1  VirB3           Type IV secretory pathway, VirB3-like protein
     0.0066   15.4   0.0       0.52    9.1   0.0    2.2  2  TrwB_AAD_bind   Type IV secretion-system coupling protein DNA
  ------ inclusion threshold ------
      0.012   16.2   0.0       0.12   12.8   0.0    2.2  2  AAA_23          AAA domain
      0.028   14.1   0.0      0.063   13.0   0.0    1.5  1  AAA_15          AAA ATPase domain


Domain annotation for each model (and alignments):
>> CagE_TrbE_VirB  CagE, TrbE, VirB family, component of type IV transporter system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.6   0.0   2.9e-46     1e-42       3     206 .]     269     470 ..     267     470 .. 0.97

  Alignments for each domain:
  == domain 1  score: 146.6 bits;  conditional E-value: 2.9e-46
  CagE_TrbE_VirB   3 LsereerellfselleflnflinGenepvklpsgsmlldeliatskvpfgkdkfiirtakdekfasilsikeYpeetrsslldsllsldieliit 97 
                     L++++e +++fs++l f++ l++ ++ +v++ + + + d + a + ++f+ +  +i++a+ +++++ l++ke++eet+ +++dsll++++ ++it
      CTQ28895.1 269 LGTFTEGNAVFSSQLAFYEYLLTHQWRKVRVTRTPAY-DVMGA-AALFFSAESGQINHANGTQYFRGLEVKEFSEETATGMMDSLLYAPCDYVIT 361
                     78999999**************************777.66666.*************************************************** PP

  CagE_TrbE_VirB  98 esfskiskqkalsklkkkqsrllsiedkaksqiteledlidevasgdvalGayhlslvlfaedkekLdkavseatkllnakGivavketigmepa 192
                     +s+  +s+++a++ +k+ ++ l+s++d+a+sq  +l+ ++d ++sg +a+G++h s++++ ++ e L + + e++++ln+ Gi  v ++i++ +a
      CTQ28895.1 362 QSYTCMSREEAKKAIKRTRRLLMSADDDAVSQRLDLDVALDLLTSGKIAYGKHHFSIMVYSPSLESLVADTNEISNALNNIGITPVPAEISLSAA 456
                     ****************9888899************************************************************************ PP

  CagE_TrbE_VirB 193 FfsqlPgnirlnvR 206
                     + +qlPgn++l++R
      CTQ28895.1 457 YMAQLPGNYNLRPR 470
                     ***********998 PP

>> VirB3  Type IV secretory pathway, VirB3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   4.7   7.4e-17   2.7e-13       4      80 ..       3      79 ..       2      82 .. 0.93

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 7.4e-17
       VirB3  4 plfkaltRpamllGvplelvllnllvsvilflvglslwillllvplhlvlrliakrDpqmfrvlllrlktrlrlr.nr 80
                +l ka+ Rpa l+Gvp++++l++ +v++i+++ + s+++l+ll++ +lv+  +++++p++f+++ ++l+ +++   nr
  CTQ28895.1  3 KLLKAMKRPAALWGVPMVPLLAVTGVTIIVAI-WTSVALLFLLPVQFLVMKSLTRNEPMRFNLIAVWLRAKGKPVaNR 79
                6889****************************.99**********************************999876445 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0     0.006        22      16      33 ..     533     550 ..     527     564 .. 0.74
   2 !    9.1   0.0   0.00015      0.52     242     318 ..     747     824 ..     737     834 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.006
  TrwB_AAD_bind  16 qhilivGttGsGKtqale 33 
                    + + i+Gt GsGKt  ++
     CTQ28895.1 533 ASTCILGTNGSGKTMLMT 550
                    5689**********8664 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00015
  TrwB_AAD_bind 242 errlWfflDElpaLgrleelksl....laegRkfGgavvlglqsiaqlrevYGedaaqsilslvntklilrvsdaetAeel 318
                     rrl  f+DE+ +  r + +k++    l+++Rk  g +v+g qs a + +    d a ++++ ++t+++++ ++a+ A+++
     CTQ28895.1 747 GRRLVIFMDEFWKWLRDPVFKDFaynkLKTIRKLNGMLVVGTQSPAEIIK---DDIAPAVIEQCGTQILAANPNADRAHYV 824
                    589999*****9999888887643333899***************97765...89*******************9999886 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.21   7.6e+02     127     182 ..     164     254 ..     142     265 .. 0.45
   2 ?   12.8   0.0   3.4e-05      0.12      18      40 ..     531     553 ..     517     627 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.21
      AAA_23 127 skkiilnlilflgqer...........feefelkdkke................................rleelekeleeledekkllekl.eqekek 181
                 ++++ +++ ++++ +r                     +                                 le++e++  + +++ k+l+   ++ +e 
  CTQ28895.1 164 RSFEGMPVTFYIHNDRntftdnlhkdsG---------NpyadevsrlyyasvglfrrnrlfltvcyrpfvSLEKAERKRMKDSQKLKELDGAlLEMLEI 253
                 4445667777777777444333333330.........14444444444444444444444444444444444444333333333333333322233333 PP

      AAA_23 182 e 182
                 +
  CTQ28895.1 254 K 254
                 3 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.4e-05
      AAA_23  18 skgltlItGpNGaGKTTildAik 40 
                 ++  t+I G NG+GKT ++ ++ 
  CTQ28895.1 531 NPASTCILGTNGSGKTMLMTFFE 553
                 5668**************99876 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.8e-05     0.063      24      50 ..     530     559 ..     519     624 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.8e-05
      AAA_15  24 e...ltvliGkNnsGKSsilealdlFlnnk 50 
                 +    t++ G+N+sGK+ ++ +++++ ++ 
  CTQ28895.1 530 KnpaSTCILGTNGSGKTMLMTFFEIMQQKY 559
                 456679********************9954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (912 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.39
# Mc/sec: 7079.31
//
Query:       CTQ28896.1  [L=235]
Description: Pilx5/VirB5-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-46  158.5  10.4    3.5e-46  158.1  10.4    1.1  1  T4SS             Type IV secretion system proteins
  ------ inclusion threshold ------
      0.011   16.0   1.0      0.011   16.0   1.0    3.1  3  BLOC1_2          Biogenesis of lysosome-related organelles co
       0.05   13.6   0.2       0.16   11.9   0.1    1.8  2  Peptidase_M16_C  Peptidase M16 inactive domain


Domain annotation for each model (and alignments):
>> T4SS  Type IV secretion system proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.1  10.4   5.8e-50   3.5e-46       1     195 [.      22     215 ..      22     217 .. 0.95

  Alignments for each domain:
  == domain 1  score: 158.1 bits;  conditional E-value: 5.8e-50
        T4SS   1 GIPV.iDaaai..aqaikqvkeaaqqltqlkqqleqakqqlesltgarglrdvgalLndpk.lrkllPaewqdvkdlvksgga......sgslssaaqs 89 
                 GIPV +Da+ +  +q+ +++k ++++  ++++q++++k+ql   ++a+g+rd++++++++k l++       d+++l+k+g+a      sg+ s+++++
  CTQ28896.1  22 GIPVaVDADPMrdVQWAQELKRWMETARHYQSQIQAYKDQL---ATATGVRDIADFVDQAKgLKA-------DLEKLRKPGQAlndlllSGGSSGQFDA 110
                 9***999998833477888889999****************...*****************9999.......*************************** PP

        T4SS  90 lrdknkvydvcalltskeqas.kaceqaankaaqdkalaeqaydkankrlkqiqkLadqinnatDpKeiaDLqaRiqaeqallqneqiqlqllqklaea 187
                 l++k+k++d+c  +t++++++ + c+q+++++a + +++++++++++++l +i++L+++++ a+D+Ke++DL++ iq+++++l++ ++q++++ k+ae+
  CTQ28896.1 111 LYEKYKIFDTC--NTAQSGSYaNVCKQQVINKAIQLEQTDEVQNQVSQTLGEINSLSNRVALAKDSKESQDLANSIQLKSVMLNTLTTQWEMSVKAAEK 207
                 ***********..899999999***************************************************************************** PP

        T4SS 188 eeklaeqr 195
                 +e+++e++
  CTQ28896.1 208 RENALEAE 215
                 **998875 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.12   7.1e+02      43      67 ..      38      62 ..      35      67 .. 0.74
   2 ?    0.0   0.0      0.18   1.1e+03      37      61 ..      72      96 ..      64     100 .. 0.72
   3 ?   16.0   1.0   1.8e-06     0.011      13      75 ..     106     169 ..     104     172 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.12
     BLOC1_2 43 aaslekkleklnekyeelqpylqqi 67
                a++l++ +e  +  + ++q y++q+
  CTQ28896.1 38 AQELKRWMETARHYQSQIQAYKDQL 62
                5677777777777777888888887 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.18
     BLOC1_2 37 kklkdvaaslekkleklnekyeelq 61
                ++  d+a++l+++lekl++  ++l+
  CTQ28896.1 72 ADFVDQAKGLKADLEKLRKPGQALN 96
                5666788888888888887666555 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 1.8e-06
     BLOC1_2  13 aeleatvedyklLeklNeaasekykkl.kdvaaslekkleklnekyeelqpylqqidqiekqvt 75 
                 ++++a  e+yk+  ++N+a+s  y+++ k+++ + + +le+++e ++++++ l +i+ + ++v+
  CTQ28896.1 106 GQFDALYEKYKIFDTCNTAQSGSYANVcKQQVINKAIQLEQTDEVQNQVSQTLGEINSLSNRVA 169
                 6788999*****************996589999999***********************99985 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.7e-05      0.16      97     165 ..      90     160 ..      22     165 .. 0.86
   2 ?   -1.1   0.0      0.28   1.7e+03     116     153 ..     172     212 ..     166     221 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.7e-05
                      HHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEE.EEEES.SCEEEEEEEEEECTTHHHHHHHHHHHHHH CS
  Peptidase_M16_C  97 lalavlntlLgggmesrLytnlrekeglaysvsaf.ndsyr.dsglfgisatadpenveevvevilkelrk 165
                       + + ln+lL++g +s  +++l ek  +++ ++   + sy  ++   +i+  ++ e+++ev + + ++l +
       CTQ28896.1  90 KPGQALNDLLLSGGSSGQFDALYEKYKIFDTCNTAqSGSYAnVCKQQVINKAIQLEQTDEVQNQVSQTLGE 160
                      56789******************************888888988888888888888999998888887765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.28
                      HHHHTTTTSESEEEEE.EEEESSCEEEEEEEEEECT..THH CS
  Peptidase_M16_C 116 tnlrekeglaysvsaf.ndsyrdsglfgisatadpe..nve 153
                      +  +e++ la s+++  ++ ++ ++ + +s++a  +  n++
       CTQ28896.1 172 KDSKESQDLANSIQLKsVMLNTLTTQWEMSVKAAEKreNAL 212
                      56678899999999998888889999999999886633333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1611  (0.0898544); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 1984.81
//
Query:       CTQ28897.1  [L=80]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.039   14.5   0.0       0.06   14.0   0.0    1.3  1  DUF4296   Domain of unknown function (DUF4296)


Domain annotation for each model (and alignments):
>> DUF4296  Domain of unknown function (DUF4296)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.3e-06      0.06      58      80 ..      26      48 ..      22      54 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.3e-06
     DUF4296 58 sSlvyYsrnpeelekiyekvedr 80
                ++ ++Y  +p+el+ +yek +++
  CTQ28897.1 26 KTTKWYRDHPDELKLVYEKCQKS 48
                789****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 694.29
//
Query:       CTQ28898.1  [L=357]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-42  145.0  19.4    2.6e-42  145.0  19.4    1.6  1  TrbL          TrbL/VirB6 plasmid conjugal transfer protein
  ------ inclusion threshold ------
        2.8    7.4  13.7       0.75    9.2   9.8    1.9  2  DUF1129       Protein of unknown function (DUF1129)
        5.8    6.0  12.8        1.8    7.7   7.3    2.3  2  Bac_export_2  FlhB HrpN YscU SpaS Family


Domain annotation for each model (and alignments):
>> TrbL  TrbL/VirB6 plasmid conjugal transfer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0  19.4   4.4e-46   2.6e-42       1     213 [.      40     250 ..      40     252 .. 0.92

  Alignments for each domain:
  == domain 1  score: 145.0 bits;  conditional E-value: 4.4e-46
        TrbL   1 ltiyiilygyaialgaieepiaelvkrllklgliaalatnwggyativvdsfaglpeaaggallssagsstsptldql...gldvadklleqasslsff 96 
                 +tiyi++ gy+++ g+ ++p+++ +++++++++i++++ n ggy + v+d+++g++e+++g+ + ++       ld+l   +  ++++l + ++s++  
  CTQ28898.1  40 ATIYIMWRGYQTLAGKLSTPMEDTMWDIMRMAIILSFVANLGGYLDGVIDAINGIKEGFSGSDNIWQ------LLDTLwnkAKVLGKTLHDMDNSTY-- 130
                 69****************************************************************8......555554425666666666666666.. PP

        TrbL  97 sniggilagllawlgvlllflvaavvlllakialalllalgpifIafllFkaTrdlFenWlgqvlsyalllvllavivglgsglfasalaalgada..s 193
                 ++ +g+ a +++wlg++ l+++a++v ++a +++ ll +++pifI++l++++ r++F+nWl+++++ +l++++ ++ +++++++++ +l++++++a  s
  CTQ28898.1 131 VKDEGMTAQFCVWLGIFALMILAGFVSMVAEVMILLLGITAPIFIFCLMYGFLRPMFNNWLQNIFAGILTILFASLSLRIVVNYLNLVLNKATKVAdsS 229
                 ***********************************************************************************************6675 PP

        TrbL 194 l.leqalalllaalvllilvi 213
                 + +e  ++++la+++++ilv+
  CTQ28898.1 230 TiVELGAQVCLAGIFAAILVY 250
                 569*************99986 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.21   1.2e+03     151     174 ..     140     163 ..     119     174 .. 0.65
   2 ?    9.2   9.8   0.00013      0.75      89     193 ..     173     283 ..     160     287 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.21
     DUF1129 151 lilllllvvwlvlftlvallpavi 174
                 +++ l ++++++l  +v+++ +v+
  CTQ28898.1 140 FCVWLGIFALMILAGFVSMVAEVM 163
                 444555666666666666655554 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00013
     DUF1129  89 lalfallfgila.lfskkkqtasiGlitlllvalvgGlamvlvyrlltre...kkkkkrpplwkr..llilllllvvwlvlftlvallpaviNpvLppl 181
                 + +f+l++g+l  +f++  q+  +G++t+l+ +l   ++  +++ +l++    ++++   +l  +  l+ ++++++v++ + +++al  a+ ++ ++ l
  CTQ28898.1 173 IFIFCLMYGFLRpMFNNWLQNIFAGILTILFASLSLRIVVNYLNLVLNKAtkvADSSTIVELGAQvcLAGIFAAILVYISAKVAAALAGASATVSMQGL 271
                 569******99747888778877*********************999997544333332222222113334444555555556677789999******* PP

     DUF1129 182 vliiigviafvv 193
                 + + ig++af++
  CTQ28898.1 272 AAVGIGAAAFGA 283
                 **********96 PP

>> Bac_export_2  FlhB HrpN YscU SpaS Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2     0.032   1.9e+02     129     191 ..      27      89 ..      18      96 .. 0.66
   2 ?    7.7   7.3    0.0003       1.8      61     167 ..     149     272 ..     104     287 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.032
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2 129 llksllkvvlvgavaylvlkseleellalaeldleaalelllslllkllllvllallviallD 191
                      s++  ++ + +++++++  +++l++ +++++e+++  ++++++ l +++ l   + +++D
    CTQ28898.1  27 SYSSMMMGLAAASATIYIMWRGYQTLAGKLSTPMEDTMWDIMRMAIILSFVANLGGYLDGVID 89 
                   444555555555666666666677777777777888777777777777777777666666666 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0003
                   X......XXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXX..XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2  61 a......lelllelllallllllplllvllla........allanllqv..gflfstkalkpklsklnp.lkglkrifslrslvellksllkvvlvg 140
                          +++++e+++ ll +++p+++++l+           l n++ +   +lf+  +l++ ++ ln  l+++ ++   +++vel  +++ + +++
    CTQ28898.1 149 LmilagfVSMVAEVMILLLGITAPIFIFCLMYgflrpmfnNWLQNIFAGilTILFASLSLRIVVNYLNLvLNKATKVADSSTIVELGAQVCLAGIFA 245
                   0333445667788888888888888888777733332222333333333335678999999999****967999*********************** PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2 141 avaylvlkseleellalaeldleaale 167
                   a+++++  +   +l++++++  ++ l+
    CTQ28898.1 246 AILVYISAKVAAALAGASATVSMQGLA 272
                   **9999988888888776554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       989  (0.055162); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 2894.50
//
Query:       CTQ28899.1  [L=227]
Description: PilX8-VirB8-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-54  185.0   6.0    1.8e-54  184.8   6.0    1.0  1  VirB8     VirB8 protein


Domain annotation for each model (and alignments):
>> VirB8  VirB8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8   6.0     1e-58   1.8e-54       2     214 .]      10     222 ..       9     222 .. 0.96

  Alignments for each domain:
  == domain 1  score: 184.8 bits;  conditional E-value: 1e-58
                 .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX.XXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHH-B-TTTH.H CS
       VirB8   2 arqfwderigsarvqarnwrlvafvslliavlavgavvlllplktvePyvvevdkttGeveavapaaekkpsadeavikaflaryvtvReiyddaalvq 100
                 +r+f++++i++ ++ ++  ++v++++lliavla++avv++lplk++   +++ d++tG+ve+v+++++++++a+ea +ka++a+yv+vRe+y +++l q
  CTQ28899.1  10 SRTFEQQMIERDKRATKAGFVVGGMGLLIAVLALVAVVVMLPLKQTDVELYTLDNHTGRVEHVTRTSKTSLTATEAYQKAMAANYVKVRERYVYPSL-Q 107
                 689**********************************************************************************************.* PP

                 HHHHHHHHTB-HHHHHHHHHHHSTT-TTSHHHHTTTSEEE.EEEEEEEEEE....ETTEEEEEEEEEEE.ETTS--EEEEEEEEEEEE...E-S---HH CS
       VirB8 101 dnydkvyllstgsaakelneyarsnnensPfaqlgketelveveiksvvla....spntaqvrfkettrredgtlaktkrwtatltfryevkqapttee 195
                 d+y++v+ ++++++++++ +++    +n+P++++++ +++v+vei s + +     +++a++r+k+ +rr +++++++++w+a +tf+ ++ +++++++
  CTQ28899.1 108 DDYETVQVYNAPQVNDDYLALYA--GKNAPDKVYKNGAHTVKVEILSNQITdataPDRVATIRYKKIIRRLADNSTRNEYWDARFTFHSNP-DKEMSDA 203
                 *********************97..459********************7773554459*****************************9998.******* PP

                 HHTT-TT-EEEEEEEEEE- CS
       VirB8 196 ellaNPlGfyVtsyswske 214
                 e+++N++Gf+Vts+++++e
  CTQ28899.1 204 EREINYFGFTVTSWQTDRE 222
                 *****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1734.06
//
Query:       CTQ28900.1  [L=301]
Description: putative type IV secretory pathway VirB9 component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-54  184.8   2.9    2.8e-54  184.0   2.9    1.4  1  CagX      Conjugal transfer protein


Domain annotation for each model (and alignments):
>> CagX  Conjugal transfer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.0   2.9   1.6e-58   2.8e-54       1     210 [.      30     274 ..      30     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: 184.0 bits;  conditional E-value: 1.6e-58
        CagX   1 sriqtvvYspgavvrvraapgyvtdielepgEkivevalGdtvrWeveptkgnhlfvkPte.....................aglktnlvvvTdkRtYs 78 
                 sr+q+v Y+p++v+ v+++pg++t+++++++E +++++ G+ ++We++p   n++ v+P +                     ++++tn++vvT+kR Y+
  CTQ28900.1  30 SRVQQVIYNPQNVTVVNTKPGFMTTLVFDNDEAVISAKPGFDEAWEATP-DANRVNVRPVAltqgapgedgnttqvvippnsRDWHTNMLVVTSKRLYN 127
                 69***********************************************.77777777777777777777777777777777***************** PP

        CagX  79 feLrste.kekkklmyrvsfrypdeeaaaaaaaaaaaaaekkeaqek.........apeklnfdYsvs...gsaeiaPervfdDgrfTyirfpsankel 164
                 +eL++ + k++++ +++vs+ryp ee+++a+++a+a+++e++++q++         a++++n++Y+     gs +i P+ ++dDgrfT++ f s++k++
  CTQ28900.1 128 VELNVIDdKSAQQPAFQVSYRYPGEERDKASREATARQREWEQKQQQasvqkalnsAQTPRNWSYTKYpgkGSFNIVPDFAYDDGRFTFVGF-SPSKSI 225
                 ****99978899******************9999999999999998899******************998888*******************.****** PP

        CagX 165 Pavfvvdedgkeelvnyrvegn....ylvvdrvakklvLrlGkevvrien 210
                 P+v+   ++ ke++vn +++++    +lv+++v ++lvLr+G++vv++en
  CTQ28900.1 226 PSVTKELNG-KEHVVNSSIQKKgdftVLVIQEVTPRLVLRSGNAVVGLEN 274
                 *****9996.9********6444466*********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2219.56
//
Query:       CTQ28901.1  [L=416]
Description: putative Pilx10/VirB10-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-42  144.4   0.2    6.8e-42  143.4   0.0    1.6  2  TrbI      Bacterial conjugation TrbI-like protein


Domain annotation for each model (and alignments):
>> TrbI  Bacterial conjugation TrbI-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.22   3.9e+03      27      41 ..     167     181 ..     129     200 .. 0.53
   2 !  143.4   0.0   3.8e-46   6.8e-42       1     187 []     220     404 ..     220     404 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.22
                 EE-S-EE-SSSS-EE CS
        TrbI  27 qvtedvysatgrall 41 
                 + + +v ++++++ l
  CTQ28901.1 167 TTQNPVKTRQQEMTL 181
                 333333333333333 PP

  == domain 2  score: 143.4 bits;  conditional E-value: 3.8e-46
                 EE-TT--EEEEESS-EESSS-EEEEEEE-S-EE-SSSS-EEE-TT-EEEEEEEE....EESSSSEEEEEEEEEEE-TT--EEES.S.----------HH CS
        TrbI   1 ylpaGtvipavLltginsdlpgqvtaqvtedvysatgrallIpkgsrligeyds....avakgqeRvlvvwtrlilpdgksiel.g.gapgadadGraG 93 
                 y+p++t ip+ L+++++sd  g+ +++vt+d++sa+g++ lI+kg+++   y++    ++++gq R++++ t+l +++   +++   ++++a+ +G+aG
  CTQ28901.1 220 YIPENTSIPCSLDRRFVSDRAGKLRCTVTTDIWSASGNTKLIEKGTTASLLYRAiaeeGMKHGQGRAFIIATKLRTRQPPYLDIpLvDTSAAGDLGEAG 318
                 8*****************************************************999889999*************88888888767999********* PP

                 HHHHHHHHHHHHHSSS-SEEEEES---EEEE------------HHHHHHHHT-TT-BHHHHHHHHHHHHTTS--EEEE-TT-EEEEEESSEEE- CS
        TrbI  94 lrGrvdnhfgkrfgaalllsllsgagellnaassssttsstgtqslaaavgegasqalsqvaqrilkraeniqptievpqGtkvtvvvnrdldl 187
                 ++G++d hf++rfg+al+++++ ++g  ++++  +++ ++  t        e+  qa+ ++a+++l++++ni+pt++ +qG+ +++++ +d+d+
  CTQ28901.1 319 VDGWIDSHFWERFGGALMVGMIPDIGAWASNSAGKKDRNTDYT--------ENSRQAMADMARTTLENSINIPPTLYKNQGEIINLITGEDIDF 404
                 ****************************999999999887777........*****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3156.83
//
Query:       CTQ28902.1  [L=341]
Description: Type IV secretion system protein VirB11 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-40  137.2   0.0    6.6e-40  136.9   0.0    1.1  1  T2SSE         Type II/IV secretion system protein
     0.0024   17.4   0.0     0.0038   16.8   0.0    1.2  1  AAA_7         P-loop containing dynein motor region
  ------ inclusion threshold ------
       0.05   14.1   0.0      0.082   13.4   0.0    1.3  1  ABC_tran      ABC transporter
       0.16   12.2   0.0       0.35   11.2   0.0    1.5  1  MetallophosN  N terminal of Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.9   0.0   1.5e-43   6.6e-40       8     241 ..      19     279 ..      13     313 .. 0.93

  Alignments for each domain:
  == domain 1  score: 136.9 bits;  conditional E-value: 1.5e-43
       T2SSE   8 llddekvsdihvekpervkvrervdgielreveelekaalerlisriaalakldiseerplqdarlpekgvrlrvvllPvvag..ealviRkksakelt 104
                 +l+ ++ ++i v++p+++    +++g+  +++  l+ + +  +++ +a + + +i++ +p ++a+l+ +g+r +v+++P+++    +++iRk+s+ ++ 
  CTQ28902.1  19 FLELPGLTEIAVNRPGELYT--KINGVWEQHAVPLSYEDCYNFARCLAKHHGDNIEDIKPGLSATLE-SGERCQVIVPPACERdtVSITIRKPSKVQIP 114
                 6788999**********988..67777788888899999999*************************.**************9666699*********9 PP

       T2SSE 105 lddlgaeealk.....................ekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiql.eganqvqlna 181
                  + ++ ++  +                     ++i  +++k v+  +++ v+G T++GKtt + +l+ +i+ +  ri t+ED  Ei    ++n+v+l  
  CTQ28902.1 115 HQSYIDAGFYNrvtgeektethdeelialyntKNIPLFMEKCVEYGKTLAVAGETSTGKTTYMKMLIGYIPVH-LRISTIEDNPEITFfIHKNYVHLFY 212
                 99999999988899***********************************************************.*************989******976 PP

       T2SSE 182 k.......kakvtfadllraaLRlrPDrimvGEiRdketleilkAvnTGHlgslsTlHansaagale 241
                            vt a+llr   R++PDri++ E+R++e+ ++lk   +GH+gs++++Ha+sa++a++
  CTQ28902.1 213 PsessdekGSIVTPASLLRWNYRMNPDRILLTEVRGAEAWDFLKITGSGHEGSMTSIHAGSAKEAID 279
                 667888866679*****************************************************96 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.4e-07    0.0038      11      55 ..     138     182 ..     130     195 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.4e-07
       AAA_7  11 eilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllk 55 
                 e l+   +t  +  ++e++++ +k + + G+t tGKt+++k l+ 
  CTQ28902.1 138 EELIALYNTKNIPLFMEKCVEYGKTLAVAGETSTGKTTYMKMLIG 182
                 55677778899999**************************98765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.8e-05     0.082       7      34 ..     156     183 ..     153     221 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-05
                 EEETTSEEEEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagl 34 
                  ++ g+++a+ Ge+ +GK+t +k+l+g 
  CTQ28902.1 156 CVEYGKTLAVAGETSTGKTTYMKMLIGY 183
                 5899*********************996 PP

>> MetallophosN  N terminal of Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.7e-05      0.35      40      77 ..     102     139 ..      95     140 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.7e-05
  MetallophosN  40 fVyistPagyevptedgllpkfYkklkkkekkkrydFe 77 
                    + i  P+  ++p+++ + + fY++++ +ek++++d e
    CTQ28902.1 102 SITIRKPSKVQIPHQSYIDAGFYNRVTGEEKTETHDEE 139
                   577889*********************99****99966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2583.84
//
Query:       CTQ28903.1  [L=56]
Description: hypothetical protein CH1034_250031 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       209  (0.0116571); expected 358.6 (0.02)
Passed bias filter:                      159  (0.00886831); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 471.45
//
Query:       CTQ28904.1  [L=101]
Description: putative plasmid conjugation protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00028   20.9   0.7    0.00035   20.6   0.1    1.4  2  TrbM      TrbM


Domain annotation for each model (and alignments):
>> TrbM  TrbM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.38   6.9e+03      12      20 ..       9      17 ..       7      18 .. 0.80
   2 !   20.6   0.1   1.9e-08   0.00035      10      60 ..      27      87 ..      23      98 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.38
        TrbM 12 aiLCLssst 20
                 +LCL+++t
  CTQ28904.1  9 TVLCLTAGT 17
                589**9986 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.9e-08
        TrbM 10 CeaiLCL...ssst.rPgeCsPsldkyFsikkkk......wsdtveaRrnFLklCPvseed 60
                Ce +LC+   +++    +eCs +   +F+i+  k         t  +R++FL  C +++ +
  CTQ28904.1 27 CEVVLCMygkATGNsGGSECSSAERAFFKINAFKkhhrfnPGKTFDMRKEFLGECKAADPE 87
                ******954444441468************8766567765568************999853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 733.94
//
Query:       CTQ28905.1  [L=101]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 792.67
//
Query:       CTQ28906.1  [L=619]
Description: MobB-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-08   32.6   0.0    0.00024   20.1   0.0    2.8  3  T4SS-DNA_transf  Type IV secretory system Conjugative DNA tra
    1.4e-07   30.8   0.0     0.0017   17.4   0.0    2.3  2  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
    2.1e-05   24.5   0.0    3.8e-05   23.7   0.0    1.5  1  TraG-D_C         TraM recognition site of TraD and TraG
      3e-05   23.1   0.0    4.9e-05   22.4   0.0    1.2  1  AAA_10           AAA-like domain
    0.00022   21.4   0.0    0.00035   20.7   0.0    1.4  1  DUF87            Helicase HerA, central domain
  ------ inclusion threshold ------
          2    7.9   4.1         30    4.0   3.9    2.6  3  DUF1129          Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> T4SS-DNA_transf  Type IV secretory system Conjugative DNA transfer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.085   2.5e+02      82     125 ..     130     171 ..     125     182 .. 0.75
   2 !    8.2   0.0   0.00031      0.93      44      84 ..     189     231 ..     166     237 .. 0.80
   3 !   20.1   0.0     8e-08   0.00024     247     438 ..     345     539 ..     330     552 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.085
  T4SS-DNA_transf  82 laeltskiRkkqgr.kVfvlePanlktsdrfNpldyidlksevet 125
                      l+++t   R+  +r +V+ +  + ++t   + pldyidl+++ +t
       CTQ28906.1 130 LVKKTTLERE--LRtDVRTVKSLLPETL-HYDPLDYIDLNKGIFT 171
                      5555555444..4447999999999999.8********9998665 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00031
  T4SS-DNA_transf  44 fehvlvvAptrsgKgvgvvi..PnllkwkqsiVvlDpkgElae 84 
                       +h+ +++ t++gKgv+  i     +  ++ + v+Dpk + ++
       CTQ28906.1 189 KQHADIIGTTGAGKGVATGIllYQSILAGEGVFVMDPKDDEWA 231
                      289************976662267888999********99885 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 8e-08
  T4SS-DNA_transf 247 tSksdFdlrdlrrkkvsvyvivnpkdlevvapllrlffnmvvellkrklpnkderpkevlflLDEfpslGkleileealatiagYgirltlIiQ 340
                       S + F+l+++ ++  + yvi ++ ++++      l++  + +l +r+ + +   p  + + L E +     ++l e+l++ ++ g+ +++  Q
       CTQ28906.1 345 NSPEGFSLKKIFDEGGCCYVIGSMRNSKIITAQRMLLVR-LYQLAERR-ERVTDVPRPIAIYLSELKYHLSRPAL-EGLGAARDKGVHIIMDHQ 435
                      566778888888888888888888888777777777776.44444443.44444556777888888765555665.68999************* PP

  T4SS-DNA_transf 341 sisqlke....tYgkegaksilsnsavvivfaasndeetaeyiSkllGktTvekestskstdakgk...srsrsisekqRaLltPdevlrmddd 427
                      si+ lk+      g++   ++++n   ++v+ + + ++ta+ i +  G++ v +e +  +td+ ++   ++ r+i +++R+ +  + +l+++d 
       CTQ28906.1 436 SIADLKDcpadLKGDAVVGAVVENAKFKMVYRVMD-PDTADWIARMSGTILVDDELRKAKTDNMLTetiDSERTIRQAERFFIDSNMILNLPDF 528
                      *******99888899999999***********999.*******************9999777655522256789*******************9 PP

  T4SS-DNA_transf 428 eeivlikgqkP 438
                       + +++++  P
       CTQ28906.1 529 VSFIFTTTTLP 539
                      99999988765 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   4.5e-05      0.13      13      52 ..     187     226 ..     181     246 .. 0.88
   2 !   17.4   0.0   5.6e-07    0.0017     182     380 ..     338     540 ..     269     545 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.5e-05
  TrwB_AAD_bind  13 retqhilivGttGsGKtqalekllrairargdraivlDlt 52 
                      +qh+ i+GttG+GK +a+  ll +    g+ + v+D++
     CTQ28906.1 187 WQKQHADIIGTTGAGKGVATGILLYQSILAGEGVFVMDPK 226
                    5689**********************9999******9987 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 5.6e-07
  TrwB_AAD_bind 182 lelLa..ekgerFSireWleeedesgwlflts.kaeqrallrpllsawldlaikallslpesrerrlWfflDElpaLgrleelksllaegRkfGga 274
                    l lL+  ++ e FS+++ + e++    ++ +  + +  ++ r ll  + +la ++      +  r +   l El+     ++l ++l  +R +G+ 
     CTQ28906.1 338 LALLNaiNSPEGFSLKKIFDEGG-CCYVIGSMrNSKIITAQRMLLVRLYQLAERRER--VTDVPRPIAIYLSELKYHLSRPAL-EGLGAARDKGVH 429
                    44444555555566666666664.222222220223334444444444444443322..223334455566666644444555.467889****** PP

  TrwB_AAD_bind 275 vvlglqsiaqlrev....YGedaaqsilslvntklilrvsdaetAeelsellGeqeversteslsygannsrd.gvslgrqrevrp.vVlaselqn 364
                    +++  qsia l++      G +   +++++++ k++ rv d +tA +++++ G   v+++   +   +n   + + s    r+ ++  + ++ ++n
     CTQ28906.1 430 IIMDHQSIADLKDCpadlKGDAVVGAVVENAKFKMVYRVMDPDTADWIARMSGTILVDDELRKAK-TDNMLTEtIDSERTIRQAERfFIDSNMILN 524
                    ***********97622226888888899999**********************999988776644.444444403344444555553455556899 PP

  TrwB_AAD_bind 365 lpdlegylklpeglpv 380
                    lpd+  ++     lp 
     CTQ28906.1 525 LPDFVSFIFTTTTLPS 540
                    9999988877777665 PP

>> TraG-D_C  TraM recognition site of TraD and TraG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.3e-08   3.8e-05      19     115 ..     418     516 ..     400     527 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.3e-08
    TraG-D_C  19 eellstgrsrgislvlilQsiaqleelYg..kega..etilgncdvklflgvndeetaeelSkllGektvesestsssssgsggssessssssqseekr 113
                 e  l ++r +g+++++  Qsia+l+++    k +a   ++++n+++k++++v d++ta++++++ G+  v+ e ++ +++++ +++  s +++ ++ +r
  CTQ28906.1 418 EG-LGAARDKGVHIIMDHQSIADLKDCPAdlKGDAvvGAVVENAKFKMVYRVMDPDTADWIARMSGTILVDDELRKAKTDNMLTETIDS-ERTIRQAER 514
                 44.7889*******************765443333569*******************************99877777777666443333.344444455 PP

    TraG-D_C 114 pL 115
                   
  CTQ28906.1 515 FF 516
                 55 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.6e-08   4.9e-05      22      84 ..     190     255 ..     185     264 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.6e-08
      AAA_10  22 sasliiGdlGnGKSvlakllvlyisllggkaliiDpkkerekfketlpe.....iakkinvvtLdsee 84 
                  ++ iiG +G+GK v + +l ++  l+g+ ++++Dpk +  ++   l+        k + +++L +++
  CTQ28906.1 190 QHADIIGTTGAGKGVATGILLYQSILAGEGVFVMDPKDD--EWAPHLYRkacedAGKPFALIDLRKQQ 255
                 5778*********************************99..676666332211244458888887444 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.2e-07   0.00035       8     119 ..     174     286 ..     168     414 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.2e-07
       DUF87   8 sgsevpvyldlnklvtrHlAilgsTGsGKSntvavLleellekkgatililDpHG.EYgkal....ekllsekvkvitpspsakdkelkinp.wsldpe 100
                 ++++ p yl l+ + ++H  i+g+TG+GK   +++Ll + +   g  + + Dp   E ++ l     +   + + +i+ +    ++++++n+  +++p+
  CTQ28906.1 174 DRENEPMYLPLKDWQKQHADIIGTTGAGKGVATGILLYQSI-LAGEGVFVMDPKDdEWAPHLyrkaCEDAGKPFALIDLR----KQQYQLNLiEDITPD 267
                 6677899******************************9999.8999*******885787777777756666667777776....566666641679999 PP

       DUF87 101 elldlleeddkpaaav.qrs 119
                 el++l+   + ++a++ q+s
  CTQ28906.1 268 ELEELFVA-GFSLAEKgQES 286
                 99999988.44444443333 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.14     4e+02     169     193 ..       1      25 [.       1      27 [. 0.90
   2 ?    4.0   3.9    0.0099        30     117     160 ..      29      69 ..      13     120 .. 0.69
   3 ?   -0.8   0.1       0.3   8.9e+02     155     181 ..     100     126 ..      86     134 .. 0.59

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.14
     DUF1129 169 llpaviNpvLpplvliiigviafvv 193
                 ++ ++++  L+p+v+ +++v+afv 
  CTQ28906.1   1 MILNKLTASLSPIVNGMLAVLAFVQ 25 
                 6889999***************985 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0099
     DUF1129 117 llvalvgGlamvlvyrlltrekkkkkrpplwkrllilllllvvw 160
                 l++al++Gl m +++ + +   ++ ++ plwkrl+i++ ll ++
  CTQ28906.1  29 LVLALLAGLTMPFFASMKS---DERQKAPLWKRLIIAFSLLCFL 69 
                 689**********998775...899*******998876655443 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.3
     DUF1129 155 lllvvwlvlftlvallpaviNpvLppl 181
                 + +++ +  +++  +l +v++p L+++
  CTQ28906.1 100 VRIAFTVTGIIFHIMLRRVFTPELDKI 126
                 333333344444455778888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 4602.05
//
Query:       CTQ28907.1  [L=248]
Description: MobC-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.29   10.8   0.0    1.6  2  Cytochrom_C550  Cytochrome c-550 domain


Domain annotation for each model (and alignments):
>> Cytochrom_C550  Cytochrome c-550 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.6e-05      0.29      63     132 ..      11      78 ..       4      82 .. 0.87
   2 ?   -2.9   0.0      0.29   5.2e+03     110     130 ..     109     129 ..     106     134 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.6e-05
                     SS--SSHHHHHHHHHS-B-TTSSSBGTTTSSSCCGTTTTGGGTTS-HHHHHHHHHHHHHHHHHCTT.TTTC CS
  Cytochrom_C550  63 tPpRdnvaalvdylknPtsyDGeedlaelhpslksadiypelrnltdedlkaiagyilvaakvaee.WGgg 132
                     t +R+ ++ l+++lk+ t  D ++ l  l+  +  ++ y+ l ++  e +  i+ ++lv+ +++ + WG +
      CTQ28907.1  11 TRNREKIKQLLNFLKEETYSDFKT-LILLFGFRDHKSLYTLLSKV--ERMGLIQKHVLVSRTIKISlWGIT 78 
                     5689************98888777.889***********888877..678889***********999**76 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.29
                     HHHHHHHHHHHHHHHHCTTTT CS
  Cytochrom_C550 110 edlkaiagyilvaakvaeeWG 130
                      +l + a+ i++++k a++W 
      CTQ28907.1 109 HHLDNQAARIILEQKGASGWI 129
                     567888899999999988885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1854.53
//
Query:       CTQ28908.1  [L=1174]
Description: Helicase-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-17   62.7   0.0    7.1e-17   61.7   0.0    1.4  1  DEAD          DEAD/DEAH box helicase
    1.2e-08   35.2   0.0    2.1e-08   34.3   0.0    1.3  1  ResIII        Type III restriction enzyme, res subunit
    5.3e-06   26.8   0.0    2.3e-05   24.7   0.0    2.1  1  Helicase_C    Helicase conserved C-terminal domain
  ------ inclusion threshold ------
       0.21   10.5   0.1       0.38    9.7   0.1    1.3  1  TRAPPC-Trs85  ER-Golgi trafficking TRAPP I complex 85 kDa sub


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   1.6e-20   7.1e-17       4     170 ..     311     471 ..     308     476 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 1.6e-20
                 HHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET..TSSHHHHHHHHHTTCS CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
        DEAD   4 Qaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig..gvaardqlskldngvd 99 
                 Q+ea    + +++d++v+ +T +GKT ++ + +l+++       g+++++++P+r+L  qt  +l++ + +++ ++++++g  gv+  d+ +++ ++ d
  CTQ28908.1 311 QREAAGRSVnDNDDLVVSLPTSAGKTRIAELCILRCL-----AGGKRVVFITPLRALSAQTEATLSRTFGPLGKTISMLYGsiGVSGMDE-DAI-RQRD 402
                 5555554443678*********************999.....6899*************************9988888899555555444.334.789* PP

                 EEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlp 170
                 ivv+tp++ld  l++    +++v ++++DE +++  ++++  ++  +++l + +      +r++++lSA lp
  CTQ28908.1 403 IVVATPEKLDFALRNDPSIINDVGLFIFDEGHMIGADEREVRYEVQIQRLLRRQ---DaDTRRIVCLSAILP 471
                 ***********99777778*****************988888877666663332...325578******887 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   4.7e-12   2.1e-08      12     149 ..     315     448 ..     285     471 .. 0.78

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 4.7e-12
                 HHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.........GEEE..ESSS-B--....... CS
      ResIII  12 ienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke.....igkk..vsgdkkkakekdstn 103
                   + +     +++  +++ ++T +GKT++a   i r+l  gk  +++f+ p ++l  qt+ ++++++ +  k         +  vsg  ++a    + +
  CTQ28908.1 315 AGRSV-----NDNDDLVVSLPTSAGKTRIAELCILRCLAGGK--RVVFITPLRALSAQTEATLSRTFGPLGKTismlyG--SigVSGMDEDA----IRQ 400
                 33333.....889999**********************9766..****************9999999988776455432..12355555555....89* PP

                 -SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T.......T CS
      ResIII 104 kkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk.......s 149
                 ++i+v+t ++ld ++      ++    +   ++i+DE H +ga++       +
  CTQ28908.1 401 RDIVVATPEKLDFAL-----RNDPSIINDVGLFIFDEGHMIGADErevryevQ 448
                 ***************.....88999999999**********997444433333 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.1e-09   2.3e-05      40     111 .]     631     706 ..     554     706 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.1e-09
                 TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSS.....HHHHHHHHTTSSSTT CS
  Helicase_C  40 gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprn.....vtsyiqriGRtgRag 111
                  + va +hg lp+  r+ei +  ++g  +v i++  +++G+++  ++ +++ +l rn     v+++   iGR+gRa+
  CTQ28908.1 631 RLGVALHHGALPTAYRKEIERLLRDGVLKVTISSPTLAQGLNLS-ATAIVMHSLHRNrelikVSEFRNVIGRAGRAY 706
                 567999*************************************5.888888888877556667************96 PP

>> TRAPPC-Trs85  ER-Golgi trafficking TRAPP I complex 85 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   8.4e-05      0.38     335     389 ..      76     131 ..      46     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 8.4e-05
  TRAPPC-Trs85 335 avrsalllEqaalcflqr.sagltrrRKaafhmvlAahryskagqkrqalrclkqa 389
                      + + +Eqa++++++   +g +  R   fh v+Aa  y  a+  + a+ +l+++
    CTQ28908.1  76 DAYARIAFEQAGTALESAiAKGKRDSRDTDFHFVMAAASYHLAHLSARAYSLLAMV 131
                   46778999*******99956777789******************999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.41
# Mc/sec: 8648.81
//
Query:       CTQ28909.1  [L=259]
Description: VrlR-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-09   37.5   0.0    3.2e-09   36.9   0.0    1.2  1  DUF1837   Domain of unknown function (DUF1837)
  ------ inclusion threshold ------
      0.035   14.2   0.0      0.076   13.1   0.0    1.7  2  SPRY      SPRY domain


Domain annotation for each model (and alignments):
>> DUF1837  Domain of unknown function (DUF1837)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   3.6e-13   3.2e-09       9     156 ..      39     189 ..      34     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 3.6e-13
     DUF1837   9 nniveyalsreeieklakeeyselseeeaakkfrkdknlksGelGEllLylllehflkapk.llsKmelktssnmevkgaDgvhikvdddgklqLwlGe 106
                   i+e++ s+++i+++ +  ++   +   a k++++k+ +sG+lGE++    ++   +  k ++++++ k+ +nm + g D++ i +d+  + qL++++
  CTQ28909.1  39 ALIPEHYASPRNIANAFEALGKLGLAAYIAGKLPETKQIRSGDLGEIFATEWINARSNGYKtPIKRLRWKDHRNMSMRGEDVIGIYIDQSSQ-QLFFLK 136
                 55676666777777777777777777788999999*************999888776655549***************************99.****97 PP

     DUF1837 107 SKlysdlksa...ideaveslkkflnedslnkelnlisnrldde.deelreaik 156
                    +s  k     ++ea ++l+k  +     + l +i +rl+++ +e l++ai 
  CTQ28909.1 137 TEAKSRAKMTgevVSEARDNLNKE-QGLPSSHALMFIADRLNEQgEELLAKAIL 189
                 7776664444458**********8.99999**************6666666664 PP

>> SPRY  SPRY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.5e-06     0.076      59      87 ..     111     139 ..      43     150 .. 0.83
   2 ?   -3.4   0.0       1.1     1e+04      31      44 ..     224     236 ..     214     246 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.5e-06
                 EESSSSTTSEEEEEEETTTTEEEEEETTE CS
        SPRY  59 gkqparegdviGvalDleegelsFtkngk 87 
                  + ++r +dviG+++D ++++l+F k + 
  CTQ28909.1 111 RNMSMRGEDVIGIYIDQSSQQLFFLKTEA 139
                 44466788****************99875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.1
                 SSSTSSTTEEEEET CS
        SPRY  31 sgegddrgswglcg 44 
                 ++  +++  wg+c 
  CTQ28909.1 224 KY-TGQNNQWGVCL 236
                 44.44555677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1997.56
//
Query:       CTQ28910.1  [L=315]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-47  160.5   0.0    2.9e-47  159.8   0.0    1.3  1  MPTase-PolyVal  Metallopeptidase superfamily domain
    1.2e-35  122.4   0.1    2.2e-35  121.5   0.1    1.5  1  DUF1738         Domain of unknown function (DUF1738)
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.035   13.8   0.0    1.4  1  EpmC            Elongation factor P hydroxylase
      0.039   13.8   0.0       0.08   12.8   0.0    1.4  1  Tox-MPTase3     Metallopeptidase toxin 3


Domain annotation for each model (and alignments):
>> MPTase-PolyVal  Metallopeptidase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.8   0.0   6.5e-51   2.9e-47       2     125 ..     180     302 ..     179     303 .. 0.98

  Alignments for each domain:
  == domain 1  score: 159.8 bits;  conditional E-value: 6.5e-51
  MPTase-PolyVal   2 eaeallaatgaeirhggdrAfYspskDeiqlPekeaFeeaesyyatllHelvHwtghesRldrdlskrfgseayarEElvAelgaaflcaelgie 96 
                     ++e+ll+++ga+i ++g++Af+sps+De+ lPe++ F++a+++yat lHel+Hw+g ++Rl+r+++++fgs++ya EEl+Aelg+afl+a+lgie
      CTQ28910.1 180 QVENLLRKSGANIIEKGQNAFFSPSTDEVWLPERHLFSDAANFYATGLHELIHWSGGKKRLNREMKGKFGSADYAEEELIAELGSAFLMADLGIE 274
                     79********************************************************************************************* PP

  MPTase-PolyVal  97 pevrdhaaYiasWlkvLkedkraifrAas 125
                      ev+ h++YiasWlk Lk+dkr if+A s
      CTQ28910.1 275 GEVQ-HESYIASWLKELKNDKRYIFKAVS 302
                     ***9.*********************976 PP

>> DUF1738  Domain of unknown function (DUF1738)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   0.1     5e-39   2.2e-35       1     128 []      40     154 ..      40     154 .. 0.93

  Alignments for each domain:
  == domain 1  score: 121.5 bits;  conditional E-value: 5e-39
     DUF1738   1 diyeeitekiieklekgtapWqkpWkt.sgslglpkNavsgkeYrGiNvllLwlaaeekgyespvwlTfkqakelgaqvrkGekgtpvvyykfiekket 98 
                 diy+++t++ii++le+g++pW+ pW++ sg++glp N+++  +Y+G+N++lLw++a ++g+++ +w+T+kqa+++g+qvr  e+gt+ ++y+++ek++ 
  CTQ28910.1  40 DIYQTVTDSIIAALEAGVKPWSCPWQRvSGMSGLPSNYATSIAYSGMNIMLLWCSASKQGFSDSRWMTYKQAQAAGGQVRTRERGTTAIFYTTLEKENA 138
                 79********************************************************************************************55444 PP

     DUF1738  99 kekekeevdsekeeeeeekeipflkaytVF 128
                                 e ++ip+lk++tVF
  CTQ28910.1 139 A--------------GEVEHIPMLKTFTVF 154
                 4..............234569999999998 PP

>> EpmC  Elongation factor P hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.7e-06     0.035      13      61 ..     191     241 ..     182     256 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.7e-06
        EpmC  13 rLvkgddePiYlPadeee...elhriifahgyfasalheiahWciaGeerrk 61 
                 ++++++++  + P+++e    e h    a +++a +lhe+ hW   G++r +
  CTQ28910.1 191 NIIEKGQNAFFSPSTDEVwlpERHLFSDAANFYATGLHELIHWS-GGKKRLN 241
                 5667777788888877652113344455789************7.5777754 PP

>> Tox-MPTase3  Metallopeptidase toxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.8e-05      0.08      95     123 ..     218     243 ..     210     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
  Tox-MPTase3  95 reanvylvivtlLHEliHwgrkkngldrp 123
                   +an+y    t LHEliHw+  k+ l+r 
   CTQ28910.1 218 DAANFY---ATGLHELIHWSGGKKRLNRE 243
                  355666...589***********999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2646.92
//
Query:       CTQ28911.1  [L=72]
Description: hypothetical protein CH1034_250039 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 549.17
//
Query:       CTQ28912.1  [L=119]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-34  118.9   1.7    1.4e-34  118.8   1.7    1.0  1  mCpol          minimal CRISPR polymerase domain
     0.0091   15.9   0.3      0.012   15.5   0.3    1.1  1  Peptidase_M73  Camelysin metallo-endopeptidase


Domain annotation for each model (and alignments):
>> mCpol  minimal CRISPR polymerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.8   1.7   1.6e-38   1.4e-34       1     113 [.       2     114 ..       2     115 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.8 bits;  conditional E-value: 1.6e-38
       mCpol   1 yiaiDGDdiGkklealllsndeeeleklskevkeaikklkkllkdelgasvifaaGDsilakssleedllvelsrvyqkit.....gltvSiGvGktlr 94 
                 yiaiDGDd+G+k+++ +lsn+ee+l ++s+++++++kk++k+l ++ g+++if+a+D+++ak+    d++v+l+ v++ki+     ++t+S+GvG++lr
  CTQ28912.1   2 YIAIDGDDVGRKITSSYLSNSEERLTYISNKLNDTTKKISKMLLSN-GFEIIFQAADGVTAKT----DNEVNLNFVFDKIKsysfdEITFSAGVGANLR 95 
                 89********************************************.****************....9******************************* PP

       mCpol  95 ealiaLkkAkskgknrvvt 113
                 ea++aL ++ks+gkn++  
  CTQ28912.1  96 EAYVALLNSKSNGKNMISI 114
                 ****************986 PP

>> Peptidase_M73  Camelysin metallo-endopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   1.3e-06     0.012      97     168 ..       6      75 ..       4      86 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-06
  Peptidase_M73  97 egeDfgkhirvefLvnedkeeevisettLaeLkemspdvveedvlallleeegddleagesdklkvkfefvd 168
                    +g+D+g++i  ++L+n++++ + is++ L++  ++ ++++ ++ ++ +++  + +++a++ +++ ++f f +
     CTQ28912.1   6 DGDDVGRKITSSYLSNSEERLTYISNK-LNDTTKKISKMLLSNGFEIIFQAAD-GVTAKTDNEVNLNFVFDK 75 
                    69********************99875.6777777777777889999998877.6*******9999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 946.91
//
Query:       CTQ28913.1  [L=61]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       888  (0.0495287); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 505.64
//
Query:       CTQ28914.1  [L=153]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-12   45.9   0.0    5.3e-12   45.5   0.0    1.1  1  Prok-JAB  Prokaryotic homologs of the JAB domain
     0.0083   16.1   0.0      0.012   15.6   0.0    1.2  1  JAB       JAB1/Mov34/MPN/PAD-1 ubiquitin protease


Domain annotation for each model (and alignments):
>> Prok-JAB  Prokaryotic homologs of the JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0     6e-16   5.3e-12      17     107 ..      36     134 ..      20     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 6e-16
    Prok-JAB  17 peEtcGlllgkeseseevivvplvnewsnrfeipdpedslarlkf...............earerglevvgiwHSHpggsarPSetDrrdaaalar..v 98 
                   E++G+l+g++ +  +++++   +        p p+d+++r +f               e +++ l ++g+wH+Hp++ ++PS tD +++   +    
  CTQ28914.1  36 STEAGGVLIGER-RGPHIVITHISE--------PGPGDIRTRNRFerkgdhhqlkvdelfEQSNGFLVYLGEWHTHPEDFPQPSYTDMKSWLTGLIatE 125
                 57*********9.677777777665........68888888887788888888888889*****************************99987554784 PP

    Prok-JAB  99 kalliivgd 107
                  +lliivg+
  CTQ28914.1 126 TMLLIIVGR 134
                 478888887 PP

>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.3e-06     0.012      12     107 ..      18     115 ..      11     117 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-06
                 HHHHHHHHHHHHHHHT...S--EEEEEEEESSSEEEEEEEEEEESEEEESSECEEEEEHHHHHHHHHHHHHHHCTTSEEEEEEEESSSS-SS--HHHHH CS
         JAB  12 vllkildhalrtekee...eevmGlliGelnddttveitnvfalpfeetekdvdavsldqeylekksellkklrgrervvGWYhshpditvwlsevdvr 107
                 v+ ++++  ++ ++ +    e  G+liGe ++   + it++ +    + +++   ++       k  el+++ +g +  +G +h+hp+   ++s  d++
  CTQ28914.1  18 VMSEVVRLLKSYRQMQyvsTEAGGVLIGERRGP-HIVITHISEPGPGDIRTRNRFERKGDHHQLKVDELFEQSNGFLVYLGEWHTHPEDFPQPSYTDMK 115
                 44444444444444444449999**********.888999998877666666555555444468999999999999***********998888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1213.42
//
Query:       CTQ28915.1  [L=589]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-25   89.5   0.0    3.2e-25   88.4   0.0    1.6  1  Prok-E2_B      Prokaryotic E2 family B
    7.2e-20   71.4   0.0    1.1e-19   70.8   0.0    1.2  1  ThiF           ThiF family
  ------ inclusion threshold ------
      0.039   14.8   0.0        0.4   11.6   0.0    2.5  2  Fic            Fic/DOC family
       0.11   12.9   0.0       0.41   11.1   0.0    1.9  1  NAD_binding_7  Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   7.1e-29   3.2e-25       1     133 [.      13     153 ..      13     154 .. 0.96

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 7.1e-29
   Prok-E2_B   1 laenwlaaaealaadelaakdgkkaierssvktsggtvdlrlvypds.fpllppavflqdpeqlk..llpHintfggaLCllee.eldldewdpngsva 95 
                 ++++++ a   + ++ l ++++   ++ ++++t++g ++++lv+ ++ f++lp a +  +peq+k  l+pH+   +g LC++e+ e+d+d++d++++++
  CTQ28915.1  13 CGYRYTRARNLPEKSILHSRERGAGYYTKEYATDAGNFNVALVIHPDpFTELPTAFIIEQPEQFKscLMPHVAL-EGFLCYVEQmEADWDSNDLEATYK 110
                 6899999999999*************************************************************.************************ PP

   Prok-E2_B  96 dvleqlqqvLnegisgde.....daefagEfqsYweseedval 133
                 +v+ q+ q+L +++s        + e++gEf++Yw ++e+ +l
  CTQ28915.1 111 EVDAQIHQTLIDSVSAATqgvndKRELEGEFAAYWRPSETLFL 153
                 **********999988777899999************999875 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   2.5e-23   1.1e-19      11     203 ..     340     550 ..     323     582 .. 0.75

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 2.5e-23
                 HHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTT....EEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHH.T-TTSEEEEEES-CCGCCS-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
        ThiF  11 dgqekLrdskvllvGaGglGsellknLalsGvg....kltlvDnDkielsNlnRqflfreediGkpKaevaaealqe.inpdveveavteritdetvle 104
                 +g+  L++++++l+G+G++G +l+++L + G g     l+l D+D   +sN  R+ l +++d G pK+ ++a++lqe +  +++v+ + e++  +    
  CTQ28915.1 340 KGAVSLSTKRIALIGCGTIGGYLAELLLRNGAGcgkgYLHLYDDDIYKPSNFGRHTL-SSHDFGWPKSLSLAAKLQEsVHLQTKVVGFMEQFRIS---A 434
                 6777899**********************77777788********************.*****************98245677888888888555...4 PP

                 HHHTT-SEEEEESSSHHHHHHHHHHHH....HHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-..TGGS.EECCCCEEHHHHHHCT............ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx............ RF
        ThiF 105 ellesvDlVvdalDniearrlvnracv....kkgiplieagtlgfegqvvviipgktgcyeCld..psstedptekkvplctsiagn............ 185
                 + ++++D+++da+   ++ + ++ +++    +++  +i+a   g   +  v+i++  +cy C+   p+++++ t+  ++ + +i ++            
  CTQ28915.1 435 DEMQKYDIIIDATGRPPVSKRIAAVVRqiplEQRPYIIHAFNDGNGRASKVFIDDGRSCYGCMVsnPAKYHKGTDSRFNDL-DISSEknkscgstytly 532
                 889*******************999887885555456887777777777777999********855234444444444444.33322322222243333 PP

                 E-B-HHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
        ThiF 186 ipaiatttavvaglaale 203
                   a++++t+ +a +a+l 
  CTQ28915.1 533 DAAVSSITSSLAQMAVLS 550
                 233444444444444444 PP

>> Fic  Fic/DOC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.52   2.3e+03       9      51 ..     115     156 ..     108     173 .. 0.69
   2 ?   11.6   0.0   8.9e-05       0.4      78      92 ..     472     486 ..     429     488 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.52
                 HHHCHS-S----.--TS--SS-ST..EEEE---SCCCHHHHHHH CS
         Fic   9 elhrlllqdige.eagefrdeevsegklesalappeevpaelee 51 
                 ++h++l++ +   ++g   ++e   ++  +a+ +p e+ + l++
  CTQ28915.1 115 QIHQTLIDSVSAaTQGVNDKRE--LEGEFAAYWRPSETLFLLSN 156
                 6999999999974323333323..47777888888887777655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 8.9e-05
                 H--SSS-HHHHHHHH CS
         Fic  78 iHPFaDGNgRtarll 92 
                 iH+F+DGNgR + ++
  CTQ28915.1 472 IHAFNDGNGRASKVF 486
                 9*********98776 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.2e-05      0.41       3      83 ..     343     461 ..     342     467 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.2e-05
  NAD_binding_7   3 ldlkgkkvlvvGgGevAarkvrklleaga.....kvtvvapevkeele........................elvklaeee............... 54 
                    + l++k++ ++G G+++   ++ ll++ga     ++++++ ++ + ++                        e                       
     CTQ28915.1 343 VSLSTKRIALIGCGTIGGYLAELLLRNGAgcgkgYLHLYDDDIYKPSNfgrhtlsshdfgwpkslslaaklqE-------Svhlqtkvvgfmeqfr 431
                    678999********************99644444689999998555557555566666666655544444432.......1333333444444433 PP

  NAD_binding_7  55 l.ekdlegadlviaatddrelneriaeaak 83 
                    +  ++++++d++i at ++ +++ria+  +
     CTQ28915.1 432 IsADEMQKYDIIIDATGRPPVSKRIAAVVR 461
                    335679*******************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4121.88
//
Query:       CTQ28916.1  [L=432]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3140.02
//
Query:       CTQ28917.1  [L=361]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-28   99.9   0.1    3.5e-28   99.2   0.1    1.3  1  Patatin      Patatin-like phospholipase
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.15   11.7   0.0    1.2  1  Ald_deCOase  Long-chain fatty aldehyde decarbonylase


Domain annotation for each model (and alignments):
>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.1   3.9e-32   3.5e-28       1     199 [.      19     205 ..      19     208 .. 0.86

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 3.9e-32
     Patatin   1 LvlsGGGsrgafslgalkaL...........kkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllg 88 
                 L+l GGG+rg f++ +l+++           + ++g++fd+i+GtS+G+i+al la g+++ +   +++ l+++ ++  +        +++  +     
  CTQ28917.1  19 LCLNGGGARGMFTISVLAEIerilasrhpdqEIRIGDYFDLIAGTSIGGILALGLAKGKSARE--LECVFLDKANDIFPP--------RWWLFNLLKSL 107
                 9******************555569999************************99999988888..888888888888888........67777777777 PP

     Patatin  89 kgglfdaealrellrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddd....dvdladavraSsafPglfppvs 183
                  + +++ ++lr++++++++++t+ +  ar+ ++p                   a+  st+ + ++  ++++d+    + +l+da++a+sa+P +f p++
  CTQ28917.1 108 VSPIYSSKPLRQTIETMIGGETTFNDLARRVMVP-------------------AVNLSTGKPQFFKTPHNPDFtrdgALKLIDAALATSAAPTFFAPHH 187
                 88999****************************5...................4555555555555555555566699********************* PP

     Patatin 184 ldge..lyvDGGilsNvP 199
                  ++   +++DGG++ N+P
  CTQ28917.1 188 CEDLgsYFADGGLVANNP 205
                 *99999***********9 PP

>> Ald_deCOase  Long-chain fatty aldehyde decarbonylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.7e-05      0.15      25      92 ..     291     360 ..     286     361 .] 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.7e-05
                  HHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHTT--..--HHHHHHHHHHHHHHHHHHHHTT- CS
  Ald_deCOase  25 akdnylklaellpekkdelarlakmearhkkgfeacgknlkvk..pdlefakeffaelhenfqeaaaegk 92 
                  a+dny++l e++p+++   + l +  +   ++++a g++l+    +  +  k+ff++  + f++a+a++k
   CTQ28917.1 291 ASDNYTSLDEVIPNEAASDITLDNATKSSIENLRARGRQLATVqfAQNQKLKSFFTTPAKPFKRAIAQEK 360
                  89**************************************7541356677799************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2684.03
//
Query:       CTQ28918.1  [L=23]
Description: hypothetical protein CH1034_250046 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (23 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.25s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 180.20
//
Query:       CTQ28919.1  [L=39]
Description: hypothetical protein CH1034_250047 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 325.35
//
Query:       CTQ28920.1  [L=581]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 4632.69
//
Query:       CTQ28921.1  [L=297]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-06   26.0   1.0    3.7e-05   23.9   0.2    2.2  2  SMODS         Second Messenger Oligonucleotide or Dinucleotid
    0.00043   20.5   0.1    0.00086   19.6   0.1    1.6  1  NTP_transf_2  Nucleotidyltransferase domain


Domain annotation for each model (and alignments):
>> SMODS  Second Messenger Oligonucleotide or Dinucleotide Synthetase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.2   4.1e-09   3.7e-05      21     111 ..      17     104 ..      12     118 .. 0.78
   2 ?   -0.6   0.0      0.15   1.3e+03     142     160 ..     272     290 ..     261     293 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 4.1e-09
       SMODS  21 kdsissrvkaitkrLnkdfrelkskiaesllvGSyardTaikpvsdkdmlfeldvdllvvvnevegdepsdlleklkkalkktyksseirq 111
                 +++ +s ++ i+++L++ + ++  k  + +l+GSy+ dT i   sd d++  ld     ++++ ++ +p+d     ++++ +ty+ ++ +q
  CTQ28921.1  17 IAQSASTYSIIKNALESANTKYHGKNFKVFLQGSYGNDTNIYAESDVDVVICLDDV---YYSDLTQLSPEDKDAYDRAFVPATYSYTQFKQ 104
                 567788999*****************************************999984...44555555555543333344466666665555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.15
       SMODS 142 drnsgeWkktnPkeetewl 160
                 +  + +W+k+++++++++ 
  CTQ28921.1 272 EGTHTSWEKADAEAFIDAA 290
                 444559*********9986 PP

>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   9.6e-08   0.00086       2      48 ..      28      82 ..      27     139 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 9.6e-08
                  HHHHHHHHHHTT..TSEEEEEHHHHCTTSCTT.SSEEEEEEESTTCHHH.....H CS
  NTP_transf_2  2 kklleelkelep..vakvvlfGSyarGtalkg.SDiDllvvlpeevsre.....k 48
                  k +le+  +++   + kv+l GSy ++t+    SD+D+++ l++  + +     +
    CTQ28921.1 28 KNALESANTKYHgkNFKVFLQGSYGNDTNIYAeSDVDVVICLDDVYYSDltqlsP 82
                  5566666666667899**************99***********997654555541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2440.78
//
Query:       CTQ28922.1  [L=320]
Description: putative patatin-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-25   90.7   2.0    1.3e-24   87.5   2.0    2.1  1  Patatin   Patatin-like phospholipase
  ------ inclusion threshold ------
      0.025   14.1   0.1      0.039   13.4   0.1    1.3  1  MdcE      Malonate decarboxylase gamma subunit (MdcE)


Domain annotation for each model (and alignments):
>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   2.0   1.5e-28   1.3e-24       1     204 []      23     204 ..      23     204 .. 0.88

  Alignments for each domain:
  == domain 1  score: 87.5 bits;  conditional E-value: 1.5e-28
     Patatin   1 LvlsGGGsrgafslgalka....LkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfda 95 
                 L+l+GGG++g+++lg+lk+    L+  l +rfd++ GtS+GAiia+l+alg+  + + + + +   +   +r                      + + +
  CTQ28922.1  23 LALDGGGAKGFYTLGVLKEieamLGCPLYKRFDLVFGTSTGAIIAALIALGYEVDQIHALYTEHVPRVMSSRS---------------------AAART 100
                 89*****************777769999***********************9888888888888888888888.....................889** PP

     Patatin  96 ealrellrkvladktlkrlsarlgklpllkslftanqavpaittata..atastanranglytedddddvdladavraSsafPglf...ppvsldge.. 187
                  al++l ++v++dkt+++    +g++            +++++t+++  +  +  +      t ++ + v++adav aS+++ ++f     v+  g+  
  CTQ28922.1 101 MALQDLAKEVFQDKTFEDVLMGIGIV------------ATRWMTERPmiFKGNVVQAHGRKGTFSPGFGVSIADAVQASCSAYPFFerkVIVTAAGDkv 187
                 **************************............678999997336778888889999999999************7777776555555566678 PP

     Patatin 188 lyvDGGilsNvPilaal 204
                 +++DGG + N+P+l+a+
  CTQ28922.1 188 ELIDGGYCANNPTLFAI 204
                 9************9986 PP

>> MdcE  Malonate decarboxylase gamma subunit (MdcE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   4.3e-06     0.039     116     161 ..      64     106 ..      51     134 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.3e-06
                 EEHHHHHHTTTT-SEEEEEE.T-EEESS-HHHHHHHHT--HHHHHHH CS
        MdcE 116 avsGaflahglqanrlialp.gvqvavmdkasaArvTkrsveaLeal 161
                 a+  a++a g++ ++++al  +  ++vm  +saA  T     aL++l
  CTQ28922.1  64 AIIAALIALGYEVDQIHALYtEHVPRVMSSRSAAARTM----ALQDL 106
                 455799*************988889******9996553....34444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2507.65
//
Query:       CTQ28923.1  [L=73]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 583.82
//
Query:       CTQ28924.1  [L=544]
Description: putative sodium:hydrogen antiporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-64  218.0  43.3    2.1e-64  217.7  43.3    1.0  1  Na_H_Exchanger  Sodium/hydrogen exchanger family


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.7  43.3   1.2e-68   2.1e-64       2     379 ..       7     418 ..       5     420 .. 0.89

  Alignments for each domain:
  == domain 1  score: 217.7 bits;  conditional E-value: 1.2e-68
                     HHHHHHHHHHHH.HHHHTT..SXHHHHHHHHHHHHTTTTTS.....HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   2 vllillallvgl.larrlk..lpeivgliiaGlllGpsglgliepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvl 93 
                     vl+++ a++v++ l++ l   +p ++++i+aG  l+ sg+     + +d+++++ l++++llFl G++++ + +++  k+il la+++v +t+++
      CTQ28924.1   7 VLVFIMAIVVTVfLSHLLPvkVPLPLIQIAAGAALAASGFQ---VD-FDPHIFLLLFIPPLLFLDGWRIPKDAFFRDMKPILSLAIGLVMVTILG 97 
                     455555666666535555455*******************9...45.************************************************ PP

                     HHHHHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHHHHHH CS
  Na_H_Exchanger  94 iGlllylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllllliflvvav 188
                     iGl++++ li+ i+++++++++ails+tdpv+v+a+   +  +p+r++++l+ges+lnDa+++v++++++a++    +g +s + +++ f+++a+
      CTQ28924.1  98 IGLFIHW-LIPAITVAAGFALAAILSPTDPVAVSAMT-ASSPLPSRMAHILEGESLLNDASGLVAFNFAIAAV---LTGSFSPGDAVVKFFLMAF 187
                     ******9.7****************************.99999******************************...9****************** PP

                     HHHHHHHHHHHHHHHHHHHS....CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHH.HHHHHTT...HHHHHHHHHH...HHHHHH CS
  Na_H_Exchanger 189 gglllglvigwllrlitrft....dddrelevllvlllallaallaellgvsgilgaflaGlvls.eyefsnk...lseklesfre...glfnpl 272
                     gg+l glv+ w++ + + f+    ++++++++l++ll++++a+llae+++vsgil+a++aG+++  e   + +   ++ k +++++     +n++
      CTQ28924.1 188 GGILSGLVVVWVTGKCNNFLvrrtREEPAIQILISLLIPFAAYLLAEAFHVSGILAAVAAGIAMHyEQLSGPRlpaTRMKSSAVWSmlqTTLNGM 282
                     *******************99999*****************************************944444442236666999**9999****** PP

                     HHHHHHHHSX......HHHHHX......XHHHHHHHHHHHHHHHTHHHHHHHHHTTTX...........SSXHHHHH....HCCCCSS.BHHHHH CS
  Na_H_Exchanger 273 fFvlvGlsld......lkvlnn......hlsvlilvllilvaillgrilavflllrll...........glslreal....iigfgglqrgaval 340
                     +F+++G +l+      ++v         ++++l+++++i++a+ l+r+++v+l  +l+               r ++    +++++g+ +g+v+l
      CTQ28924.1 283 IFLMLGEQLPrmlrtlPAVA-SqagvssPWYLLLYAVAITLALGLMRFAWVWLSMKLTifrrkrrgkaiT--VRPRFsilaVMALAGV-KGSVTL 373
                     **********8888852222.25778888********************************999998553..4444444657789999.****** PP

                     HHHHHHHHH.....XHHHHTT.SSTTTCSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger 341 alaalgpal.....gllarel.yallivvvlftvlvqGlslkpll 379
                     a ++ +p       +++ rel ++l  +v+l++++v+ ++l++++
      CTQ28924.1 374 AGILTLPVVladgsPFPGRELlIFLSMAVILMSLVVAAIGLPFMT 418
                     *9887665556666***************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3919.14
//
Query:       CTQ28925.1  [L=234]
Description: Transcriptional regulator AcuR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-46  157.3   0.3    1.7e-46  156.9   0.3    1.2  1  TetR_C_13  Tetracyclin repressor-like, C-terminal domain
    2.7e-08   33.5   0.0    5.1e-08   32.6   0.0    1.5  1  TetR_N     Bacterial regulatory proteins, tetR family
     0.0005   20.4   0.9     0.0036   17.6   1.1    2.1  2  TetR_C_11  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> TetR_C_13  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.9   0.3   2.8e-50   1.7e-46       1     114 [.      98     211 ..      98     212 .. 0.98

  Alignments for each domain:
  == domain 1  score: 156.9 bits;  conditional E-value: 2.8e-50
                 -HHHHHHHHHHHHHHHHHTTTT----HHHHHHHTGGGS-TTHHHHHHHHHHHHHHHHHHHHHHHHCTTSS-TTS-HHHHHHHHHHHHHHHHHHHHHHTS CS
   TetR_C_13   1 aPlerlrafvedakagmeryefkrGCLvGnLgqEvaalpesfrerleevledwqkrvaacleeaqeageiaadadaeelaeffwigWeGAvlRaklers 99 
                 +Pler++afv++a +gme+++f+rGCLvGnL qE+  lpe+f +rl ++l++w++rva+cl+eaq+ag+ia+da++++la++fwigWeGAv+Ra+l++s
  CTQ28925.1  98 PPLERMAAFVRHAGQGMEKFQFRRGCLVGNLLQEAPLLPETFPQRLMAILAAWESRVARCLREAQAAGAIASDASPQALAQVFWIGWEGAVMRARLVQS 196
                 6************************************************************************************************** PP

                 SHHHHHHHHHHGGG. CS
   TetR_C_13 100 tqPlelfletflaal 114
                 ++Pl++++++f +++
  CTQ28925.1 197 AAPLNQYWDFFAHSM 211
                 ***********9876 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   8.5e-12   5.1e-08       2      43 ..      31      72 ..      30      76 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 8.5e-12
                HHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHH CS
      TetR_N  2 ldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeL 43
                +  ++e++ e Gy a++++++ k   v kg++Y+ F+sKe+ 
  CTQ28925.1 31 IRSGLEVLTETGYLAAGIDAVIKNIAVPKGSFYHCFKSKEAF 72
                77889***********************************96 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.21   1.2e+03      50      79 ..      21      50 ..      17      66 .. 0.80
   2 !   17.6   1.1   6.1e-07    0.0036      23      87 ..     118     181 ..     101     204 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.21
   TetR_C_11 50 erlleprraalravlrrAvarGelradadv 79
                +++ + r+a +r  l+   + G l+a++d+
  CTQ28925.1 21 RQFDDTRQALIRSGLEVLTETGYLAAGIDA 50
                667788999999999999999999999887 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 6.1e-07
   TetR_C_11  23 aspragallrallaeaqrdpel.aealrerlleprraalravlrrAvarGelradadvelvldlll 87 
                 +  r g l+  ll ea   pe+  ++l + +l+ + +++++ lr A+a G ++ da ++++++++ 
  CTQ28925.1 118 QF-RRGCLVGNLLQEAPLLPETfPQRLMA-ILAAWESRVARCLREAQAAGAIASDASPQALAQVFW 181
                 33.67889999999999988772577777.*****************************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1852.36
//
Query:       CTQ28926.1  [L=325]
Description: putative oxidoreductase, Zn-dependent and NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-14   52.1   0.1    1.1e-13   51.2   0.1    1.4  1  ADH_zinc_N     Zinc-binding dehydrogenase
    7.8e-05   22.2   0.1    0.00098   18.7   0.1    2.2  2  Epimerase      NAD dependent epimerase/dehydratase family
    0.00023   21.0   0.0    0.00041   20.2   0.0    1.4  1  ADH_N          Alcohol dehydrogenase GroES-like domain
     0.0021   17.9   0.0     0.0075   16.2   0.0    1.8  1  ADH_N_2        N-terminal domain of oxidoreductase
     0.0096   15.4   0.0      0.015   14.7   0.0    1.3  1  adh_short      short chain dehydrogenase
  ------ inclusion threshold ------
      0.062   12.6   0.3      0.086   12.1   0.3    1.2  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
       0.24   10.8   0.1       0.38   10.1   0.1    1.3  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.1   4.4e-17   1.1e-13       1     116 [.     158     269 ..     158     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 4.4e-17
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeeefd 98 
                 gvG+ av l+kalG +v+av++ e+  +++++lGad ++ +++  + e  + l  ++    ++++vG g +l   l+ ++++G+++ +G+ g+ + + +
  CTQ28926.1 158 GVGSTAVVLLKALGYRVTAVSGRESTHDYLRQLGADTILPRSD--FAE-TRPLE-KQLWAGAVDTVG-GPVLAKVLAQTQYRGCVAACGLaGGFDLPTT 251
                 9****************************************44..443.34454.4577889*****.*********************986666779* PP

                 HHHHHHTT-EEEEE-SSC CS
  ADH_zinc_N  99 lrnlllkeksilGsllgs 116
                 +++++l++++++G+    
  CTQ28926.1 252 VMPFILRNVRLQGVDSVM 269
                 *************87666 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   3.8e-07   0.00098       1      40 [.     150     189 ..     150     237 .. 0.78
   2 ?    1.4   0.0     0.073   1.9e+02      51      95 ..     273     318 ..     254     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.8e-07
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHC CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarl 40 
                 ilVtGa+G +Gs  v  l++ gy+v++++ ++s++   r+
  CTQ28926.1 150 ILVTGASGGVGSTAVVLLKALGYRVTAVSGRESTHDYLRQ 189
                 8****************************99776665544 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.073
                 T-HHHHHHHHHHHT-SEEEE--S.---HHHHHHSHHHHHHHHTHHH CS
   Epimerase  51 tdrsalerlfkeeqpdavihlAa.vggvaassedpadfieknlqgt 95 
                  +r+a+ + +++  p+  +  Aa + + ++   ++adf+ +n++g 
  CTQ28926.1 273 AERDAVWQRLAQLLPESYYQQAAtEITLEQAPAYAADFLSNNIHGR 318
                 566777777788899999999999******************9986 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.6e-07   0.00041       2      78 ..      28     108 ..      27     140 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.6e-07
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SS......SHHHHTT-G CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscge......CaaCkegee 78 
                 g+v++ + +++++  D   ++g+ ++ +++p+++G +++G+v+e  +   ++  G+ V++  +   ++       +aC +g+ 
  CTQ28926.1  28 GDVRVAIDWSSLNYKDALAITGKGKIIRQFPMVPGIDFAGQVKESRD--PRFVPGQAVILTGWGVGENhwgglaTEACVKGDW 108
                 79******************************************775..4688999998865544333455555666666665 PP

>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.9e-06    0.0075      19      90 ..      16      85 ..       7      94 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.9e-06
     ADH_N_2 19 eleeeelpelkdGevlvralylSvDPymRgrmndaksyvepvelgdvmrggavgeVveSknpdfkvGdlVvg 90
                ++++ +lp+l++G+v+v +++ S+       ++ + + +  +++   +     g+V eS++p+f +G+ V+ 
  CTQ28926.1 16 TVKDIDLPALAEGDVRVAIDWSSLNYKDALAITGKGKIIRQFPMVPGI--DFAGQVKESRDPRFVPGQAVIL 85
                578899*******************88888888888888855544333..35689*************9974 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     6e-06     0.015       3      46 ..     150     192 ..     149     221 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6e-06
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelke 46 
                 +lvtGas+G+G   +  l + G++v++v+ +e++ +  + +l++
  CTQ28926.1 150 ILVTGASGGVGSTAVVLLKALGYRVTAVSGREST-HDYLRQLGA 192
                 79*************************9888654.466666655 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   3.4e-05     0.086      21      75 ..     141     195 ..     121     226 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.4e-05
                  CEETCB---EEEEEST.SHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCEC CS
  AlaDh_PNT_C  21 GgvpgvepakvlviGg.GvaGlqAiatakglgakVtvlDvrparleqleslgakfv 75 
                  +gv+  + + +lv G+ G +G  A+   k+lg +Vt++  r+++  +l++lga ++
   CTQ28926.1 141 AGVT-PDSGDILVTGAsGGVGSTAVVLLKALGYRVTAVSGRESTHDYLRQLGADTI 195
                  3343.37899*****8799********************************99865 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00015      0.38       1      34 [.     151     184 ..     151     204 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS- CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssf 34 
                    L+TG +G +Gs  + lL + gy+v+ +  r+s+ 
     CTQ28926.1 151 LVTGASGGVGSTAVVLLKALGYRVTAVSGRESTH 184
                    9*************************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2421.75
//
Query:       CTQ28927.1  [L=310]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-11   45.0  17.7    8.7e-06   26.0   5.5    2.9  3  Gate      Nucleoside recognition


Domain annotation for each model (and alignments):
>> Gate  Nucleoside recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   5.5   4.9e-10   8.7e-06       1      90 [.      19      99 ..      19     106 .. 0.70
   2 ?   -1.2   0.0      0.14   2.5e+03      36      50 ..     114     126 ..     103     142 .. 0.74
   3 !   25.7   2.2     6e-10   1.1e-05       2      67 ..     183     250 ..     182     299 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 4.9e-10
        Gate  1 llkagpiillasiliwflssssllgrigkllepvfaplgqeldwkatvsll.tgfaakevvvgtlgtlytsalgellqgfdtpksalafll 90
                l++++pi+++++i++++l+  ++l+ i ++++p+++p+g  l++ ++ +l+  +f++  + ++tl        + + ++  + ++  a+l 
  CTQ28927.1 19 LYTLLPIMVIMLIIMKYLEVRGILDVIVRWVAPLLKPFG--LTGMSAFALIqINFVSFAAPLATL--------SIMDKRGVSDRQMAATLA 99
                5789***********************************..777666666523333222333333........344666666666444443 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.14
        Gate  36 aplgqeldwkatvsl 50 
                  p+g  l+w a++ +
  CTQ28927.1 114 TPFG--LHWLASIVI 126
                 6788..999887754 PP

  == domain 3  score: 25.7 bits;  conditional E-value: 6e-10
        Gate   2 lkagpiillasiliwflssssllgrigkllepvfaplg..qeldwkatvslltgfaakevvvgtlgtl 67 
                 l a+p+++l ++++++l+  ++++ + +ll+p++++l   q++  +a v +++g +a   v++ l++ 
  CTQ28927.1 183 LGAVPMLILSLTIVGLLQGAGAIDLLQQLLKPLLSWLHipQNFVLPALVKCVAGGTAYFGVISELIQQ 250
                 689************************************************************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2468.66
//
Query:       CTQ28928.1  [L=540]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-13   49.8   0.0    6.4e-13   48.5   0.0    1.7  1  Hydrolase_4      Serine aminopeptidase, S33
    2.3e-07   31.7  15.2    2.3e-07   31.7  15.2    2.3  2  Abhydrolase_6    Alpha/beta hydrolase family
    6.6e-07   29.2   0.1    1.2e-06   28.3   0.1    1.5  1  Abhydrolase_1    alpha/beta hydrolase fold
     0.0063   15.5   0.0      0.011   14.7   0.0    1.3  1  Chlorophyllase2  Chlorophyllase enzyme
     0.0091   15.9   0.1      0.019   14.8   0.1    1.6  1  Abhydrolase_3    alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.088   12.9   0.0       0.21   11.7   0.0    1.6  1  Thioesterase     Thioesterase domain
        0.2   11.0   0.0       0.34   10.2   0.0    1.3  1  DUF915           Alpha/beta hydrolase of unknown function (DU


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   2.5e-16   6.4e-13       2     123 ..     127     250 ..     126     351 .. 0.73

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 2.5e-16
  Hydrolase_4   2 epkavvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvk.eehpelplfllGhSmGGliallyl.... 94 
                  +p++ vvl+HGl+++   +  la+ ++++G+  +a    GhG  +g+     +++++++  + +v+++      + pl l+G S GG++al+y+    
   CTQ28928.1 127 KPRGSVVLLHGLTDSPYSVRYLAQLWQQRGYVAVAPRLPGHGTAPGALT-AVDWETWLAATRLAVREATrLAGADVPLDLVGYSNGGALALKYAldsl 223
                  89******************************************99888.778***********988874777777******************7775 PP

  Hydrolase_4  95 .lrypdkvaglilsaPalkikaklkappll 123
                   + + ++ + +il +P++++ a     +++
   CTQ28928.1 224 eDSHLRQPQQIILLSPMIGVTAF---ARFA 250
                  544445899*********99853...2222 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.49   1.3e+03      91     159 ..      32     112 ..      11     124 .. 0.48
   2 !   31.7  15.2   8.8e-11   2.3e-07       1     133 [.     132     273 ..     132     510 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.49
                    EEES-..----TTTS----TTHHHHHHTT-C.........CCCHCCHS-HSCCCCHHH.....C....CCCHCHCCCGHHHHCCHHC CS
  Abhydrolase_6  91 vlldppptalpagllaaalelllallallrl.........lawlsreplprlfladed.....a....daawrarlarlaallaglg 159
                    v+l++       + + +al  ++++ +++++         +++l+   + ++++ad+      a    d + + r+ r+++ ++g +
     CTQ28928.1  32 VFLAG---RIYESQRGPALHRWHTWSSNEMSaeeidqatfAQYLA---REKTIFADLQrevteAlpeeDKTPVNRFYRHSRVWPGQF 112
                    66666...6666666666666666666444433333322233332...222555544432222122334666666666666666655 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 8.8e-11
                    EEEE--GC.....GCHHHHHHHHCCT.CEEEEE--TTSTS-GGCS--HHHCHHH.HHHHCCTT......TTSE..EEEEETCHHHHHHHHHHCC.. CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaag.vhvlapDlpGhGrsdpppldledladl.aalldelaa....gggpv..vlvGHSlGGalalaaapla.. 86 
                    v+llHG+    s + v+ La l  ++ +  +ap lpGhG + p +l+  d +++ aa+  ++++     g +v   lvG+S GGalal    +a  
     CTQ28928.1 132 VVLLHGLTD--SPYSVRYLAQLWQQRgYVAVAPRLPGHG-TAPGALTAVDWETWlAATRLAVREatrlAGADVplDLVGYSNGGALALK---YAld 221
                    8*****665..666567999999999966689*******.44444333332333222111111122353444556**************...8888 PP

                    ..............EEEEES-.................----TTTS----TTHHHHHHTT-CCCCHCCHS-HSC CS
  Abhydrolase_6  87 ............lvvgvlldp...............pptalpagllaaalelllallallrllawlsreplprl 133
                                +   +ll+p                         + +++       +++++awl+   ++++
     CTQ28928.1 222 sledshlrqpqqI---ILLSPmigvtafarfaglagL---------PSVFP-------AFARAAWLN---VAPE 273
                    8998777764332...999993222222222211111.........11111.......222234442...1111 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   4.9e-10   1.2e-06       1      94 [.     130     222 ..     130     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 4.9e-10
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH..HH.HHHCTTSSEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddld..ri.ldalgddkltlvGhSmGGmialayaae 93 
                    +++v+lhGl++s ++ +   la+  +++g+  +++ l+G+g  + a++   +d++t+  a  l    + + a  d +l lvG+S GG++al ya++
     CTQ28928.1 130 GSVVLLHGLTDSPYSVRY--LAQLWQQRGYVAVAPRLPGHGTAPGALTA--VDWETWLAATRLAvrEAtRLAGADVPLDLVGYSNGGALALKYALD 221
                    589***************..*****************************..99***98887777754458888888888***************98 PP

                    H CS
  Abhydrolase_1  94 y 94 
                     
     CTQ28928.1 222 S 222
                    6 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.2e-06     0.011      20     131 ..     132     244 ..     119     256 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.2e-06
  Chlorophyllase2  20 llflhGylllnslYsqlLkhiashgfivvapqlykvaeadakeiksaakvlnWlakg.LesvlpeevepdlsklalsgHSrGgktafalalgka 112
                      +++lhG++  ++  + l +     g+++vap+l    +a      +a    +Wla+  L+ + ++ +  +   l l+g S+Gg  a++ al++ 
       CTQ28928.1 132 VVLLHGLTDSPYSVRYLAQLWQQRGYVAVAPRLPGHGTA--PGALTAVDWETWLAATrLAVREATRLAGADVPLDLVGYSNGGALALKYALDSL 223
                      56789999888888888888999*********9985333..56667788899**9988999999*****99********************998 PP

  Chlorophyllase2 113 ktsl..kfsaligvdPvagas 131
                      + s   + + +i + P+ g++
       CTQ28928.1 224 EDSHlrQPQQIILLSPMIGVT 244
                      855446666777777776654 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   7.5e-06     0.019      52     111 ..     182     245 ..     151     333 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.5e-06
                    HHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT.---EEEEEEESE...-SS CS
  Abhydrolase_3  52 alaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardeg.epkvagqvliyP...vtd 111
                     laa+r ++ +a +l+     + l+G S GG la+  al   +++   ++++++l++P   vt 
     CTQ28928.1 182 WLAATRLAVREATRLAGADVPLDLVGYSNGGALALKYALDSLEDShLRQPQQIILLSPmigVTA 245
                    45555555555567777777899***************88777763667*********664332 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.2e-05      0.21      66      99 ..     200     236 ..     149     243 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.2e-05
                   S.SEEEEEETHHHHHHHHHHHH.HHHC.T-SEEEEEE CS
  Thioesterase  66 g.PyalfGhSlGgllAfevArq.Lesq.Glavkslfl 99 
                   + P++l+G+S Gg+lA + A   Le+   ++++ ++l
    CTQ28928.1 200 DvPLDLVGYSNGGALALKYALDsLEDShLRQPQQIIL 236
                   44***************99974266557777777776 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00013      0.34     106     135 ..     204     233 ..     202     242 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00013
      DUF915 106 navGhSmGglaltsYleeyaddkslPqlkk 135
                 ++vG+S+Gg  +++Y+ +  +d++l q ++
  CTQ28928.1 204 DLVGYSNGGALALKYALDSLEDSHLRQPQQ 233
                 79********************99866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3719.61
//
Query:       CTQ28929.1  [L=80]
Description: Signal transduction protein PmrD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-37  128.1   0.1    1.1e-37  128.0   0.1    1.0  1  PmrD      Polymyxin resistance protein PmrD


Domain annotation for each model (and alignments):
>> PmrD  Polymyxin resistance protein PmrD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   0.1   6.3e-42   1.1e-37       1      79 [.       1      79 [.       1      80 [] 0.98

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 6.3e-42
                --EEEEEEE--STTSEEEEEEETTSSSEEEEEEEE.SS---TT-EEEECCTTEEEECTEEEEEEEEEEEEE--HHHHHHH CS
        PmrD  1 mEWlvkkvlnvkqaslkvlvldaggalkliaeves.dlklkeGDlLsPlqdarYclNrekaqtlKilsassYssdrWqra 79
                mEW+vkkv+++++asl+++vl ++gal++iae+e+ +l+l+eGD+L+Pl+darYclN++++qtlKi++a++Yss+rW++a
  CTQ28929.1  1 MEWWVKKVQDNASASLCRVVL-QSGALEMIAEIEAcRLRLREGDKLTPLADARYCLNNNPTQTLKIRNATHYSSERWTNA 79
                9********************.99******************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 626.13
//
Query:       CTQ28930.1  [L=484]
Description: AMP nucleosidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-51  173.1   0.1    5.5e-51  172.3   0.1    1.4  1  AMNp_N     Bacterial AMP nucleoside phosphorylase N-terminus
    7.4e-20   71.2   0.0    1.1e-19   70.6   0.0    1.2  1  PNP_UDP_1  Phosphorylase superfamily
  ------ inclusion threshold ------
       0.19   11.4   0.3       0.63    9.7   0.0    2.0  2  GntR       Bacterial regulatory proteins, gntR family


Domain annotation for each model (and alignments):
>> AMNp_N  Bacterial AMP nucleoside phosphorylase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.3   0.1   9.3e-55   5.5e-51       1     153 [.      12     167 ..      12     170 .. 0.98

  Alignments for each domain:
  == domain 1  score: 172.3 bits;  conditional E-value: 9.3e-55
                 HHHHHHHHHHHHHHHHHHHHHHHHHCC-----HHHHC..TTEEEEEEEEE-S--SS.-SS-SSS--SSSEEEEEE---TTTTHHHHHHHHHHHHHCC-- CS
      AMNp_N   1 aavarleelYeeavaalrealeaflaggelpderara..afvYPelrvtteseaev.dsrrsfgrvsepGtYsttvtrPdlfreYlleqlelLlrnygv 96 
                 +a+a+le+ Ye++v+alr+a+ +++++++lpd++ara   fvYP+l+v+++++ ++  ++r++gr++++G+Y+tt+t+P+lfr+Ylleql+lL+++yg+
  CTQ28930.1  12 QALAELEARYEASVTALRKAIGDYIDHNTLPDTEARAegLFVYPQLSVSWDGADHKaLKTRAWGRFTHAGCYTTTITNPKLFRNYLLEQLTLLYQDYGA 110
                 699***********************************9*************999889***************************************** PP

                 EEEEEEEEEE--GGGCCTSST---SCCCHHHHHHCS--B-STXXXXXXXXXXXXXXX CS
      AMNp_N  97 evevgeSdqeiPlhyvldeselelegalsaeladvfdvpdLaaidDeiadGtleaae 153
                 +++v+ S++eiP++yv+d+s+l+l++++sa l+++f++++L++i+De+adG+++++e
  CTQ28930.1 111 HISVELSQHEIPYPYVIDGSTLTLDRSMSAGLTRYFPTTELSQIGDETADGLFHPTE 167
                 ****************************************************99875 PP

>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   1.9e-23   1.1e-19      37     202 ..     266     431 ..     245     456 .. 0.87

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 1.9e-23
                 EEETTEEEEEEE--SSHHHHHHHHHHHHHHHC--SEEEEEEEEEESSTTT-TT-EEEEEEEEESSSCCGCCTHHCCTCCCCTTSSEE--HHHHHHHHH. CS
   PNP_UDP_1  37 GtlkgkpvvivstGiGkpnaavvaeirllkefgvkaiiriGtaGglnpdlkvGDvvipddainfdgrsplygpkeegqyfpdsydapadpelrallke. 134
                  t+ gk ++++  G+G+ na +++ + ++   ++++ ++iG +Ggl+++ ++GD v++ +++++d   ++  p    +  p ++ a + ++l++++k+ 
  CTQ28930.1 266 ITHDGKGITLINIGVGPANAKTICDHLAVL--RPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAVLP----PDIPIPSIAEVQRALYDATKQv 358
                 57789****************555555555..7******************************9999999998....66788888889**********5 PP

                 ...CHHTTTTTEEEEEEEEESESS-CHHHHHH..HHHHTC-CEEESSHHHHHHHHHHTT--EEEEEEEEETTT CS
   PNP_UDP_1 135 ...aaealgikvhrGvvatadgfyaeteaelr..llrrlgadaveMEtaavaqlArelgipfaairvvsdlaa 202
                    + e+  +++++G+v+t+d    e +  ++  +++   a a++ME+a +a+  +++ +p++++ +vsd+  
  CTQ28930.1 359 sgmPGEEVKQRLRTGTVVTTDDRNWELRYSASalRFNLSRAVAIDMESATIAAQGYRFRVPYGTLLCVSDKPL 431
                 554444444******************6655577888888******************************654 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0001      0.63      12      45 ..       2      32 ..       1      35 [. 0.93
   2 ?   -1.9   0.0      0.46   2.7e+03      40      40 ..     362     362 ..     325     380 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0001
                HHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHH CS
        GntR 12 dIlsgelrpGdkLPsereLaaefgVsrttvReAL 45
                 I++  l+p+++L    eL a+++ s t +R+A+
  CTQ28930.1  2 NIKAASLTPEQAL---AELEARYEASVTALRKAI 32
                689999*******...9****************8 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.46
                 H CS
        GntR  40 t 40 
                 +
  CTQ28930.1 362 P 362
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3568.12
//
Query:       CTQ28931.1  [L=478]
Description: putative Na+-driven multidrug efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-57  192.2  29.4    3.4e-35  121.1  10.4    2.6  3  MatE      MatE


Domain annotation for each model (and alignments):
>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.1  10.4   1.9e-39   3.4e-35       1     159 [.      37     197 ..      37     199 .. 0.98
   2 ?   -2.6   0.5       0.2   3.7e+03      14      48 ..     230     264 ..     212     266 .. 0.60
   3 !   82.9   4.5     1e-27   1.9e-23       1     161 []     267     428 ..     267     428 .. 0.99

  Alignments for each domain:
  == domain 1  score: 121.1 bits;  conditional E-value: 1.9e-39
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqils 99 
                 Pi+len+++ l++ ++t+lv++lg++a+A+v++a s+ +++++f+ ++  ++t++v+ +lG+++++ra+ a+rq+l +++l+s+++a ++ +f + i+ 
  CTQ28931.1  37 PILLENACVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMSFFAAIDLGTTVVVAFSLGKRDRRRARAAARQSLAIMTLFSILLAGVIHAFGQEIID 135
                 9************************************************************************************************** PP

        MatE 100 lftqdee..vlelakrylrililgipalalqlvlsgilrgagktkvplyislislllnipln 159
                 ++  d++  v  la +yl++++l++pa a+ l+ sg+lrgag tk+pl i+   ++lni+++
  CTQ28931.1 136 FVAGDATaqVKDLALTYLELTALSYPAAAIALIGSGALRGAGTTKIPLLINGGMNILNILIS 197
                 ****99999******************************************9999****875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.2
        MatE  14 lidtllvgrlgskalAavsialsilsllfvfllgl 48 
                 +i +l+vg  ++  l+  +++ ++ + +++ ++g+
  CTQ28931.1 230 TIWVLMVGLNPALRLSLKGYFKPFNFAIIWEVMGI 264
                 34444555556666666666666666666666666 PP

  == domain 3  score: 82.9 bits;  conditional E-value: 1e-27
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqils 99 
                 P+ +e++l++  +l++ ++v+++g++ +A+  ia+s++sl+ +++ +l++a t+++g++lG+++  +a++++ + ++l++++  +ia     f+ +i+s
  CTQ28931.1 267 PASIESVLFNGGKLLTQMFVAGMGTNVIAGNFIAFSVASLINLPGNALGSASTIITGKRLGKGQIGQAEFQAWHVFWLSTIILTLIAWGSAPFAGFIAS 365
                 999************************************************************************************************ PP

        MatE 100 lftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislisl.llniplnyl 161
                 ++t++e+v e++k++l + +l++p+ +l+ +l  +++ga +++ ++ +s++++  ++++ +y+
  CTQ28931.1 366 FYTHEEDVKEVVKQLLWLNALFMPIWSLSWTLPCAFKGARDVRYTMWVSMLGMwGCRVVAGYT 428
                 **********************************************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3727.55
//
Query:       CTQ28932.1  [L=54]
Description: hypothetical protein CH1034_250060 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 474.25
//
Query:       CTQ28933.1  [L=367]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0018   17.7   0.0     0.0049   16.3   0.0    1.7  1  Pkinase   Protein kinase domain
  ------ inclusion threshold ------
        0.8    9.7   3.8       0.83    9.7   0.0    2.6  2  B         B domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.4e-07    0.0049     100     144 ..     138     182 ..      43     195 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.4e-07
                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTT CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGl 144
                 + ++++q+++ le + ++g++  Dl + N+L+d++++l + DFG 
  CTQ28933.1 138 TPSLIAQLFTTLEACEEQGLMEWDLCSGNLLVDRQEQLWLFDFGY 182
                 457899**************************************7 PP

>> B  B domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   1.5      0.22     2e+03       3      12 ..       2      11 ..       1      13 [. 0.84
   2 ?    9.7   0.0   9.3e-05      0.83      21      37 ..      86     102 ..      79     107 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.22
                HHHHHHHHHH CS
           B  3 nfnkdQQnAF 12
                n +++QQ+AF
  CTQ28933.1  2 NLRQQQQQAF 11
                56889****9 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 9.3e-05
                 S-HHHHHHHHHHHHH-G CS
           B  21 lteeqrNgyIqslkddP 37 
                 l+e qr +  q+lkddP
  CTQ28933.1  86 LNEVQRRQALQQLKDDP 102
                 9**************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2900.11
//
Query:       CTQ28934.1  [L=323]
Description: FOG: GGDEF domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-42  144.4   0.1    3.4e-42  143.9   0.1    1.2  1  GGDEF     Diguanylate cyclase, GGDEF domain
      3e-09   37.6   0.0    5.3e-09   36.8   0.0    1.4  1  GAF       GAF domain
      5e-07   30.1   0.0    8.9e-07   29.3   0.0    1.4  1  GAF_2     GAF domain
  ------ inclusion threshold ------
       0.09   13.0   0.0       0.19   12.0   0.0    1.6  1  GGDEF_2   GGDEF-like domain
        0.1   13.0   0.0       0.23   11.8   0.0    1.6  1  GAF_3     GAF domain


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.9   0.1   9.4e-46   3.4e-42       1     158 [.     164     318 ..     164     322 .. 0.95

  Alignments for each domain:
  == domain 1  score: 143.9 bits;  conditional E-value: 9.4e-46
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaael 99 
                 a+ D+lTgL NRr + +  e +l  a+r+++++++ ++dld+Fk+indt+Gh++GD+ L+++a+ ++ + r+sd++aR ggdeF+il+ +ts+++aa++
  CTQ28934.1 164 ATSDELTGLFNRRGFLTLAEYALLTAQRRHEPVSLAFVDLDRFKHINDTWGHEEGDRALIAIADLMKAAFRESDILARQGGDEFIILFANTSRHDAATA 262
                 578***********************989****************************************************************999999 PP

                 HHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCT CS
       GGDEF 100 aerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkag 158
                 +e +++++a+++++   ++++ ++ +s G++ ++p ++ +l+ l+ +Ad+ +y+aK+++
  CTQ28934.1 263 METLSHNVARFNQQ---AANPWQLAFSWGCVEYDPASHPSLNALVATADRLMYQAKQKQ 318
                 99999999998885...678999*********************************975 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.5e-12   5.3e-09       3     130 ..      28     155 ..      27     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.5e-12
                 HHHHHHHHHHHHHHHTESEEEEEEEEETTE.EECEEEEECCEEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEE.TT CS
         GAF   3 eelldtvveelrellgadrvalylpdydGl.hydipqasrwlfmkngrgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvn.dg 99 
                 ee +d++++ +r+l ++  +++ l   ++l h +  ++++    + + ++c++++ + +pl+++d ++d+rf +  ++ ++e++ ir +++ P+   dg
  CTQ28934.1  28 EERFDRLTRLARSLYNLPVASISLV-GEDLlHIKSCAGLDVDTVPRDISFCAHTILQTDPLIVNDMQQDERFHD--NPLVIEAPFIRFYAGYPVQLpDG 123
                 68899*****************873.222324456667777666668889**99999*****************..9******************99** PP

                 EEEEEEEEEESSS.CSHHHHHHHHHHHHHHHH CS
         GAF 100 elwGllvlhnpsp.pftreelellqvladqva 130
                  ++G ++l +++p +f+ +e+++l  la+ v+
  CTQ28934.1 124 ATVGSFCLMDHQPrSFSAHEMQILSDLAAIVE 155
                 **********77778************98765 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.5e-10   8.9e-07       5     132 ..      28     153 ..      24     156 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 2.5e-10
                 HHHHHHHHHHHHHS.S..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHH.HHHHTT--E.EEEEE-T CS
       GAF_2   5 eelldlvldelvel.gaalgyillvdddgglrlaawgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglp.aghaglrsf.lavPlis 100
                 ee +d++++ ++ l +  ++ i lv   ++  l++     + + + ++r  + + +++ + +  p+i+nd+++d++ +  p   +a++ +f ++ P+  
  CTQ28934.1  28 EERFDRLTRLARSLyNLPVASISLVG--ED--LLHIKSCAGLDVDTVPR--DISFCAHTILQTDPLIVNDMQQDERFHDNPlVIEAPFIRFyAGYPVQL 120
                 56678888888887788888888855..66..66666666666666644..345688888888**********9999999996666666666*****88 PP

                 .TS---EEEEES......--HHHHHHHHHHHHH CS
       GAF_2 101 .egrvvGvlnlyankppafdeedlelLeelaeq 132
                  +g +vG ++l  ++p++f++ ++++L+ la+ 
  CTQ28934.1 121 pDGATVGSFCLMDHQPRSFSAHEMQILSDLAAI 153
                 8*****************************986 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.3e-05      0.19      31      86 ..     215     272 ..     180     296 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.3e-05
     GGDEF_2  31 eedaerllraleealral..gpdalvavrgdrlvlllpaedeedaeallerlarrlgg 86 
                 +e+++r+l a++++++a+    d+l+   gd++++l++  ++ da++++e+l+  +++
  CTQ28934.1 215 HEEGDRALIAIADLMKAAfrESDILARQGGDEFIILFANTSRHDAATAMETLSHNVAR 272
                 4577788888888887776778999999999***********9999999998866655 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.4e-05      0.23       4     121 ..      29     152 ..      27     154 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.4e-05
       GAF_3   4 ellekllkllvkllgaevgalllldedgnklqvaagwdgkpalsesldedsalarralssgevvsepsfaeedglpdraa.........la.vPLvagr 92 
                 e ++ l +l+ +l ++ v+++ l+ ed   l +++++ ++ ++  ++++d + ++ ++ +  +++++++ + ++ +d+++         +a  P+++++
  CTQ28934.1  29 ERFDRLTRLARSLYNLPVASISLVGED---LLHIKSC-AGLDV-DTVPRDISFCAHTILQTDPLIVNDMQQDERFHDNPLvieapfirfYAgYPVQLPD 122
                 666777778888888888888888876...6677777.66665.4666555555555555558889999888887775554444555546669****** PP

       GAF_3  93 .qviGvlalastkprafdaedlelleslAr 121
                   ++G  +l+ ++pr+f+a +++ l++lA+
  CTQ28934.1 123 gATVGSFCLMDHQPRSFSAHEMQILSDLAA 152
                 ****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2376.01
//
Query:       CTQ28935.1  [L=278]
Description: Non-heme chloroperoxidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-29  101.9   1.3    9.6e-29  100.8   1.3    1.5  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.2e-23   83.6   1.4    2.4e-23   82.6   1.4    1.4  1  Hydrolase_4    Serine aminopeptidase, S33
    4.5e-20   73.2   1.8    5.7e-20   72.9   1.8    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    5.9e-09   35.7   0.8    1.1e-06   28.3   0.0    2.1  2  Peptidase_S9   Prolyl oligopeptidase family
      3e-05   23.7   0.0     0.0048   16.5   0.0    2.2  2  DLH            Dienelactone hydrolase family
    0.00014   22.0   0.0     0.0039   17.3   0.0    2.4  2  Abhydrolase_4  TAP-like protein
     0.0014   18.3   0.4      0.026   14.1   0.4    2.1  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
     0.0014   17.4   0.1      0.022   13.5   0.0    2.4  3  AXE1           Acetyl xylan esterase (AXE1)
     0.0026   17.6   0.2        1.7    8.4   0.1    2.2  2  Abhydrolase_5  Alpha/beta hydrolase family
     0.0065   15.8   0.0      0.014   14.7   0.0    1.5  1  DUF915         Alpha/beta hydrolase of unknown function (DUF9
  ------ inclusion threshold ------
       0.03   13.8   0.1      0.074   12.5   0.0    1.8  2  Esterase_phd   Esterase PHB depolymerase
      0.046   12.4   0.0      0.067   11.9   0.0    1.2  1  Ndr            Ndr family
      0.046   14.1   0.7      0.083   13.3   0.1    1.8  1  EHN            Epoxide hydrolase N terminus


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   1.3     7e-32   9.6e-29       2     250 ..      24     258 ..      23     265 .. 0.90

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 7e-32
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH... CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey... 94 
                    ++v++hG+p s+d w ++ l+  La+ gf+vi++D rG+g+S+  ++   +   ++++a+d+ +++++l++++ + vGhS GG +++ y a+y   
     CTQ28935.1  24 PIVFHHGWPLSADDWDNQMLF-FLAE-GFRVIAIDRRGHGRSDQVSEG--H--DMDHYAADVSAVVEHLDLHNAVHVGHSTGGGQVARYVARYgqp 113
                    89***************8888.8888.****************99986..5..5666**************************************9 PP

                    GGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH.....HCHHHCCHHHHHHHCHHHHHHH CS
  Abhydrolase_1  95 perVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf.....pdkskrfpssgsdnasslatga 185
                    + rV++ vl++a   ++ + +++++   ++ + fdg++ + a n+a  +l+  ++    + r      +     + + ++ +++g   +    +++
     CTQ28935.1 114 QGRVAKAVLISA--VPPLMVKTEQNPGGTPIEVFDGFRKALAANRAQFYLDVASGPFYGFNR------DgaeisQGTIQNWWRQGMIGSAKAHYEG 201
                    99**********..*****************************************9999966......2244459999999999988888888888 PP

                    HHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHC.HTSEEEEEEETCSS CS
  Abhydrolase_1 186 lksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaql.lpkkrlvvisdagH 250
                    +k++++ ++t   k++           p+lv++g++D++vp+k+   l+++ lp+++l+++++  H
     CTQ28935.1 202 IKAFSETDQTEDLKSITL---------PVLVMQGDDDQVVPYKNAAILQDKlLPNSQLKIYPGFPH 258
                    888888888888888888.........***************8888888777********999887 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   1.4   1.8e-26   2.4e-23       6     235 ..      24     261 ..      19     264 .. 0.78

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 1.8e-26
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypd...k 100
                   +v+ HG   +++  ++ +  + a+Gf v+a+D rGhGrs+ +  + +++d+y +D++a+ve++  ++     + +GhS+GG  +++y++ry +   +
   CTQ28935.1  24 PIVFHHGWPLSADDWDNQMLFFLAEGFRVIAIDRRGHGRSD-QVSEGHDMDHYAADVSAVVEHLDLHN----AVHVGHSTGGGQVARYVARYGQpqgR 116
                  589999999999999**9**********************6.4445699***************9555....5779*************999887778 PP

  Hydrolase_4 101 vaglilsaPa..lkikakl.k.appllkl..llkllgkllpklqv.snnlkadslsrdpevvaayeadplv.hgki.tvrlllelldamkrle..era 187
                  va+++l++++  l +k++  +  +p+  +  ++k l+    ++++  ++  +    rd +++ +     ++ +g+i +++  +e ++a +++   e+ 
   CTQ28935.1 117 VAKAVLISAVppLMVKTEQnPgGTPIEVFdgFRKALAANRAQFYLdVASGPFYGFNRDGAEISQGTIQNWWrQGMIgSAKAHYEGIKAFSETDqtEDL 214
                  998888875411333333353334443333333333333333333547789***********98777777755554599**********988611567 PP

  Hydrolase_4 188 akitlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyHell 235
                  ++itlP+l+++G++D+vv++++++ l ++l   + +lk+ypg+ H ++
   CTQ28935.1 215 KSITLPVLVMQGDDDQVVPYKNAAILQDKLLP-NSQLKIYPGFPHGMH 261
                  8899**************************97.************998 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   1.8   4.1e-23   5.7e-20       1     211 [.      25     262 ..      25     272 .. 0.66

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 4.1e-23
                    EEEE--GC.....G.CHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH...CHHHHHHHCCTT..TTSEEEEEETCHHHHHHH.HHHCC..... CS
  Abhydrolase_6   1 vlllHGagssassW.lvapLaallaagvhvlapDlpGhGrsdpppldled...ladlaalldelaagggpvvlvGHSlGGalala.aapla....l 87 
                    +++ HG ++sa++W    +++ +la+g++v+a+D++GhGrsd    +++    +ad++a++++l+   +++v vGHS GG  +++ +a++     +
     CTQ28935.1  25 IVFHHGWPLSADDWdN--QMLFFLAEGFRVIAIDRRGHGRSDQVSEGHDMdhyAADVSAVVEHLD--LHNAVHVGHSTGGGQVARyVARYGqpqgR 116
                    89************55..99999****************88665544433333599999*****6..9999******9977666625555599987 PP

                    .EE.EEES-........----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHH..C....CCCHCHCCCGHHHHCC.......HHC.HTT CS
  Abhydrolase_6  88 vvg.vlldp.pp.....talpagllaaalelllallallrllawlsreplprlfladed..a....daawrarlarlaalla.......glg.llp 162
                    v++ vl+++ pp      + p g +  ++  ++++la+ r+  +l    ++ +f++ +   a     ++ +++ +++  +++       ++  +  
     CTQ28935.1 117 VAKaVLISAvPPlmvktEQNPGGTPIEVFDGFRKALAANRAQFYLD--VASGPFYGFNRdgAeisqGTIQNWWRQGMIGSAKahyegikAFSeTDQ 210
                    6778*****4445544325555557777777777777777644442..244466663333314555677777777777555533333322223556 PP

                    CCHHTT-TTGCEEE.CTT-CHHHHCHHCCCH.....STTEEETCE...SSS-HHH CS
  Abhydrolase_6 163 aaawadlpvpllvl.ggeDplvprllerlla.....qagarlpvvlpgaGHlphl 211
                     ++++ ++ p+lv+ g++D++vp  ++ ++      ++  +l +++pg  H +h 
     CTQ28935.1 211 TEDLKSITLPVLVMqGDDDQVVP--YKNAAIlqdklLPNSQL-KIYPGFPHGMHT 262
                    99*********999778888777..44433322333366666.666654454444 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.4    0.0063       8.7       8      79 ..      43     104 ..      36     116 .. 0.79
   2 !   28.3   0.0   7.7e-10   1.1e-06      89     205 ..     159     276 ..     148     278 .] 0.75

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0063
                   HHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHH CS
  Peptidase_S9   8 qlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltg 79 
                    ++ ++G+ v++++ rG g ++++  +   ++  ++ ++D+ a++e+l      d  + +  G+S GG  ++
    CTQ28935.1  43 LFFLAEGFRVIAIDRRGHG-RSDQVSE---GHDMDHYAADVSAVVEHL------DLHNAVHVGHSTGGGQVA 104
                   445599***********98.6655555...788888999999999999......889999999999996665 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 7.7e-10
                   -SEEEEESE---CCCHHCSTTS..THHHCCCC--TTTCHHHHHHHHHH-CGGG--....---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEE CS
  Peptidase_S9  89 Fkaavaevpvvdvlrydsdtdl..lteeymewgnpeeneegykelspyspldnvk....aypplLlihGlaDdrvppaealklvaaLqkkgknvlll 179
                   F   va+ p++   r+  + +   +++++ +     + +++y+ +++ s +d+ +    ++ p+L+++G+ D+ vp+++a+ l ++L     n++l+
    CTQ28935.1 159 FYLDVASGPFYGFNRDGAEISQgtIQNWWRQGMIG-SAKAHYEGIKAFSETDQTEdlksITLPVLVMQGDDDQVVPYKNAAILQDKLLP---NSQLK 251
                   55556666777776666666666566677765554.6777787777777777777777**********************999999975...699** PP

                   EETTS-SSTTSSHHHH.HHHHHHHHHH CS
  Peptidase_S9 180 ifpdegHgvgkprakv.eelarllaFl 205
                   i+p+  Hg+   ++++    a+llaF+
    CTQ28935.1 252 IYPGFPHGMH--TSHAdTINADLLAFI 276
                   *******666..555557888888887 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0091        13     115     195 ..      96     177 ..      90     197 .. 0.80
   2 !   16.5   0.0   3.4e-06    0.0048     133     198 ..     207     269 ..     181     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0091
         DLH 115 laaevpevdaavafYGlspekeleeaakika.pilalfgeeDef.ipadevekleealkaanvdlelkvYpgagHaFandsre 195
                 +++ + +v++ va YG +p+ ++++a  i+a p l++  e+ +   p +  + +++al+a+ +++ l+v +g   +F++d +e
  CTQ28935.1  96 HSTGGGQVARYVARYG-QPQGRVAKAVLISAvPPLMVKTEQNPGgTPIEVFDGFRKALAANRAQFYLDVASGPFYGFNRDGAE 177
                 5677789999******.88888888877654466666666666515677799*************************998765 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 3.4e-06
         DLH 133 pekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsresyn 198
                    + e+ + i  p+l++ g+ D+++p +++  l+ +l    ++ +lk+Ypg  H+ +  +++  n
  CTQ28935.1 207 ETDQTEDLKSITLPVLVMQGDDDQVVPYKNAAILQDKL---LPNSQLKIYPGFPHGMHTSHADTIN 269
                 4455667788999***********************99...7899***********9988776655 PP

>> Abhydrolase_4  TAP-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.14     2e+02      26      60 ..     117     152 ..      90     158 .. 0.75
   2 !   17.3   0.0   2.8e-06    0.0039      29      91 ..     211     276 ..     194     278 .] 0.79

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.14
  Abhydrolase_4  26 rdestakgaapvLllqnerDpa.TPyegakklakal 60 
                    + ++   +a+p+L++++e+ p  TP e    ++kal
     CTQ28935.1 117 VAKAVLISAVPPLMVKTEQNPGgTPIEVFDGFRKAL 152
                    3344445589*******9999548888777776666 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.8e-06
  Abhydrolase_4  29 sta.kg.aapvLllqnerDpaTPyegakklakal.ggavlvtvegeGHgalaagntCvdkavdaYL 91 
                    +++ k+ + pvL++q+  D ++Py+ a+ l+++l ++++l ++ g  Hg+ +++ + ++  + a++
     CTQ28935.1 211 TEDlKSiTLPVLVMQGDDDQVVPYKNAAILQDKLlPNSQLKIYPGFPHGMHTSHADTINADLLAFI 276
                    222133379*********************9986266***99**9999999888888887777766 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.4   1.9e-05     0.026      44      96 ..      36      89 ..      15     256 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-05
                   HCCHGGGHHHHHTT-EEEEEE-TTSTTS-S---TT.TTTHHHHHHHHHHHHHHC CS
  Peptidase_S15 44 eelelqdkvfvarGYavVvqdvrGtggSeGeftvg.dsdeaedgadvidWlakq 96
                    +++ q+ +f+a+G+ v+  d rG+g S+ + +   +++ a+d+++v++ l  +
     CTQ28935.1 36 DDWDNQMLFFLAEGFRVIAIDRRGHGRSDQVSEGHdMDHYAADVSAVVEHLDLH 89
                   456677777********************9999987777899999999977664 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.6e-05     0.022      80     127 ..      20      67 ..       5      85 .. 0.76
   2 ?   -1.3   0.0       0.5   6.9e+02     161     186 ..      76     101 ..      71     109 .. 0.84
   3 ?    0.7   0.0      0.12   1.6e+02     256     306 ..     215     265 ..     193     274 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
                 SSSEEEEEEEE-TT--GGGHHH.HHHHHHTT-EEEEEE-TTTS..SSB- CS
        AXE1  80 eeklPavvefhGYegsrgeihd.llnyaaaGyavvvmdvRGqggesedk 127
                 +e  P+v++ hG+  s+ ++ + +l++ a+G+ v+++d RG g + + +
  CTQ28935.1  20 KEAQPIVFH-HGWPLSADDWDNqMLFFLAEGFRVIAIDRRGHGRSDQVS 67 
                 367787775.9*****9999762688999************99433323 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.5
                 HHHHHHTSTTEEEEEEEEEEETHHHH CS
        AXE1 161 lveivaslpevDeeRvavlGasqGGa 186
                 ++++ a +++ D +  + +G+s GG+
  CTQ28935.1  76 AADVSAVVEHLDLHNAVHVGHSTGGG 101
                 6778888899999999*******998 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.12
                 CC--S-EEEEEETT-SSS-HHHHHHHHHH--SSEEEEEETT-STTTTHHHH CS
        AXE1 256 krvkaevllsvgLeDevcpPstvfaaynkletekeikvyeefahealkafq 306
                 k +  +vl++ g +D+v p      + +kl  + ++k+y+ f h   +++ 
  CTQ28935.1 215 KSITLPVLVMQGDDDQVVPYKNAAILQDKLLPNSQLKIYPGFPHGMHTSHA 265
                 567789999999999999988888888999999*********998887774 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0012       1.7      48      91 ..      81     127 ..      74     140 .. 0.73
   2 !    7.1   0.0     0.003       4.1      83     140 ..     201     258 ..     190     266 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
  Abhydrolase_5  48 eiikeapklekfvvgGhslGGvvasrfaa....eeekiegvvflasYP 91 
                     ++ e+ +l++ v  Ghs GG  ++r++a     ++++  +v++++ P
     CTQ28935.1  81 AVV-EHLDLHNAVHVGHSTGGGQVARYVArygqPQGRVAKAVLISAVP 127
                    444.47789999**********99999983332234676677776666 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.003
  Abhydrolase_5  83 gvvflasYPekdelselskkvlsivgteDgvlnvkslekakkflpkdtkvvsieGgnh 140
                    g+  ++   + ++l++ + +vl + g++D+v+++k++   +++l  ++++    G  h
     CTQ28935.1 201 GIKAFSETDQTEDLKSITLPVLVMQGDDDQVVPYKNAAILQDKLLPNSQLKIYPGFPH 258
                    5555555566788**********************99988888888888776666655 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     1e-05     0.014      91     139 ..      81     123 ..      66     140 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1e-05
      DUF915  91 kvlseLkkkYnikkfnavGhSmGglaltsYleeyaddkslPqlkklvti 139
                 +      ++  ++++  vGhS Gg ++++Y++ y++ +    + k v i
  CTQ28935.1  81 A----VVEHLDLHNAVHVGHSTGGGQVARYVARYGQPQ--GRVAKAVLI 123
                 3....444556777888*****************9977..357777766 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1         2   2.7e+03      98     101 ..      91      94 ..      55     133 .. 0.56
   2 ?   12.5   0.0   5.3e-05     0.074     168     195 ..     217     244 ..     160     261 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
  Esterase_phd  98 rvyv 101
                    v+v
    CTQ28935.1  91 AVHV 94 
                   2333 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.3e-05
  Esterase_phd 168 pglpalvvqGdadtvvavknaeslvval 195
                     lp lv+qGd d+vv  kna  l  +l
    CTQ28935.1 217 ITLPVLVMQGDDDQVVPYKNAAILQDKL 244
                   579******************9887666 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.9e-05     0.067      56     134 ..      50     127 ..      41     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.9e-05
                 SEEEEEE-TT-STT-----TT-----HHHHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHS...GGGEEEEEEES--- CS
         Ndr  56 fvilhvdaPGqeegaaslpedyqfpslddladqllavldhfklksviglGvgaGAyilarfalkh...perveglvLinits 134
                 f ++ +d  G+   +++++e+     +d+ a +++av++h++l++++ +G   G   +ar+ +++   + rv   vLi++ +
  CTQ28935.1  50 FRVIAIDRRGHGR-SDQVSEG---HDMDHYAADVSAVVEHLDLHNAVHVGHSTGGGQVARYVARYgqpQGRVAKAVLISAVP 127
                 5566666666654.4556666...579***************************9999999998844456999999999865 PP

>> EHN  Epoxide hydrolase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1     6e-05     0.083      71     105 ..       3      35 ..       1      38 [. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6e-05
         EHN  71 fkteidgldihFihlrsakpdaiPllllhGWPgsf 105
                 f t+ dg++i F    +  ++a P+++ hGWP s+
  CTQ28935.1   3 FVTTQDGVNIYFKDWGP--KEAQPIVFHHGWPLSA 35 
                 66666888888887776..6899*********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2099.92
//
Query:       CTQ28936.1  [L=191]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.12   11.8   1.3       0.22   11.0   1.3    1.4  1  DUF1129          Protein of unknown function (DUF1129)
       0.75    9.0  29.2       0.95    8.7  29.2    1.1  1  UbiA             UbiA prenyltransferase family


Domain annotation for each model (and alignments):
>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.3   2.4e-05      0.22     111     161 ..      48      98 ..      21     111 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.4e-05
     DUF1129 111 iGlitlllvalvgGlamvlvyrlltrekkkkkrpplwkrllilllllvvwl 161
                  +l+t l+ a+ +G+ ++  + +l+r+     r  ++ +++  ll+lv+w 
  CTQ28936.1  48 LSLLTALIAAFGVGWGFTRGQSWLYRSSLAATRWAFLLSAAGWLLALVAWY 98 
                 689***********************9999999999999999999999997 PP

>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  29.2   0.00011      0.95      69     236 ..      22     186 ..      12     191 .] 0.72

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00011
        UbiA  69 alifaivllilgllll....alllnpltallgllallly.vvYt.g.lrlKrrtllgtvvggiafglppllgwaa.vtgslsllalllalavflltwai 159
                 a+++++v+++ +lll     +  ++ l++l++l+a + + +  t g  +l r++l +t + ++  + + ll+ +a ++g+ +++all+++a++   +a+
  CTQ28936.1  22 AIALSVVIAAGALLLImppvIGVTGTLSLLTALIAAFGVgWGFTrGqSWLYRSSLAATRWAFLLSAAGWLLALVAwYGGQ-DWPALLPGVACGGAGAAV 119
                 4444444444444444677656778888888888888888*****999******************99999999988898.****************** PP

        UbiA 160 alandlrdregDrkagiktlpvvlGrkaarillalllavlllallllllalllllylllalllaalallraarlvrr 236
                 a+           +ag+  lp      a++  +a+++a++ll  + +  ++  ++ +++a+ll  ++l   + ++r+
  CTQ28936.1 120 AWR---------IAAGRTALPGMRVSGATVLSVAIAIAATLLT-WHTAGGGRHGVCFAFAVLLDWALLGALMVRIRQ 186
                 ***.........9999999999996666666457677777666.444444444444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1588.58
//
Query:       CTQ28937.1  [L=304]
Description: LysR substrate binding domain protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-31  107.3   6.2      1e-30  106.7   6.2    1.3  1  LysR_substrate  LysR substrate binding domain
    4.8e-18   64.9   1.4    1.6e-17   63.2   1.4    2.0  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.039   14.0   0.3       0.11   12.6   0.3    1.7  1  HTH_20          Helix-turn-helix domain
      0.047   13.3   2.2      0.075   12.7   0.5    2.1  2  HTH_50          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   6.2   2.3e-34     1e-30       7     208 ..      96     293 ..      90     294 .. 0.91

  Alignments for each domain:
  == domain 1  score: 106.7 bits;  conditional E-value: 2.3e-34
                     EEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE.CGGG CS
  LysR_substrate   7 rLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv.sled 100
                     +L++++++ + +++l+p+la+f+ar+P ++l+l+++   e +d l+ g++D+air+++ ++++l ++ L+e+++++vasp         + ++ed
      CTQ28937.1  96 SLTVTTTSNFLTHWLVPRLADFTARFPAIDLRLHTSV--ERVD-LHLGTVDAAIRYRETSERDLYCTLLYEDRFIVVASPTL------GLsRPED 181
                     799**********************************..****.*************************************7......3337889 PP

                     GCTSEEEEESTTST..HHHHHHHHHHCTTEEC...EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEET CS
  LysR_substrate 101 Ladeplilleegsg..lrdlledalreaglkp...rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrk 189
                     L++ +l ++ +        ++e++ r++g +    +++l++++   +l+++ aG G+ +++++++rd l++g l+ +p+++ +lp +++ylv+ +
      CTQ28937.1 182 LQRVTLFHVANRRVpaDSPSWENWRRRYGPPTlniDAGLTFSDETHALQAAVAGQGVVIASELLARDLLQRGVLS-APFSN-ALPgARYYLVTTE 274
                     99999998855544578888888888885544555****************************************.*****.8888********* PP

                     TCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidflreal 208
                        +++ + a++++l++++
      CTQ28937.1 275 AAAQRADIIALREWLLSQM 293
                     ***************9876 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   1.4   3.7e-21   1.6e-17       2      60 .]      10      68 ..       9      68 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 3.7e-21
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                 +lr+f+ava+++sf +AAe+L +s  avs+qik LE+ l+++  eR+ +g++LT+ Ge
  CTQ28937.1 10 GALRAFHAVARHRSFKQAAEALSVSATAVSHQIKLLESVLECRVCERSAQGVSLTADGE 68
                579******************************************************97 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   2.4e-05      0.11      19      50 ..      15      47 ..       9      49 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.4e-05
                H.STCTTB-HHHHHHHHTS-HHHHHHHHHHHHH CS
      HTH_20 19 L.araegltaselaerldlskntlsyHLrvLee 50
                + a a+ +++++ ae+l++s + +s++++ Le+
  CTQ28937.1 15 FhAVARHRSFKQAAEALSVSATAVSHQIKLLES 47
                36678899***********************97 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   1.7e-05     0.075      18      45 ..      16      43 ..      15      45 .. 0.90
   2 ?   -1.3   0.1      0.37   1.7e+03      22      40 ..     128     146 ..     126     149 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
      HTH_50 18 kayekYpStRklAkrLGvShtaianklr 45
                +a++++ S+  +A++L vS ta+   ++
  CTQ28937.1 16 HAVARHRSFKQAAEALSVSATAVSHQIK 43
                7999*******************87665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.37
      HTH_50  22 kYpStRklAkrLGvShtai 40 
                  ++S+  +  +LG+  +ai
  CTQ28937.1 128 LHTSVERVDLHLGTVDAAI 146
                 5788888888999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2545.07
//
Query:       CTQ28938.1  [L=111]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-36  122.0   0.9      1e-34  118.2   0.5    2.1  2  DUF1869   Domain of unknown function (DUF1869)


Domain annotation for each model (and alignments):
>> DUF1869  Domain of unknown function (DUF1869)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.4   0.0    0.0082   1.5e+02      22      42 ..      25      45 ..       4      48 .. 0.82
   2 !  118.2   0.5   5.8e-39     1e-34       2      59 .]      54     111 .]      53     111 .] 0.98

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.0082
                E--SCGGC-HHHHHHHHHHHH CS
     DUF1869 22 feslaeLkdpevaaevvKdLi 42
                f +++ L  p+ a e+v dL+
  CTQ28938.1 25 FLKPMVLYIPQQAVEAVNDLL 45
                667889999**********96 PP

  == domain 2  score: 118.2 bits;  conditional E-value: 5.8e-39
                 ---EEEEEEETTT--EEEEEE--SCGGC-HHHHHHHHHHHHHHHHHTTSSSSS-SS-- CS
     DUF1869   2 eaelllTvTNknNGVSVDkefeslaeLkdpevaaevvKdLiNivRgYdsdeetnvCGW 59 
                 e e+llTvTN+nNGVSVDk+f+sla+L+dp +aa++vKdLiNivRgY+sdeetnvCGW
  CTQ28938.1  54 EGEFLLTVTNNNNGVSVDKTFSSLAALRDPLTAADTVKDLINIVRGYESDEETNVCGW 111
                 789******************************************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 987.71
//
Query:       CTQ28939.1  [L=110]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-24   83.5   0.0    9.4e-24   83.2   0.0    1.1  1  DUF1971   Domain of unknown function (DUF1971)
  ------ inclusion threshold ------
      0.033   13.9   0.1      0.084   12.6   0.0    1.8  2  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> DUF1971  Domain of unknown function (DUF1971)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0     1e-27   9.4e-24       1      80 []      14      98 ..      14      98 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 1e-27
                EE---EETTTS-GGGGSSE...TSSTTEEEEEEEEESEEEEEEEST..TSSECEEEEEETTEEEEB-TT-EEEEEESSTT-EEEE CS
     DUF1971  1 krtpvfteetlPaallekH...nTkaGvwgklrVleGelkfyilae..egeeeeelllsaeqpgvvePqvwHkveplsddvefqv 80
                ++tp +t+et Pa+++++H    T++Gv+++l+V++G +++ ++a+  + e++e+l+++a+q+gv++P++wH +e+ls+d+ f+v
  CTQ28939.1 14 RSTPLWTKETAPASIWRRHldaGTRQGVYPRLSVMQGAIRYLGYADetSPEPVETLTIEAGQFGVFPPEKWHCIEALSEDTVFNV 98
                79*******************99*********************998889999******************************97 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       0.5   4.5e+03      11      17 ..       6      13 ..       4      16 .. 0.54
   2 ?   12.6   0.0   9.4e-06     0.084      37      64 ..      67      94 ..      44     101 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.5
                EEEEC.SS CS
     Cupin_2 11 apshr.Hp 17
                +p h+ H+
  CTQ28939.1  6 IPTHYvHT 13
                35555565 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 9.4e-06
                EEEEEETTEEEEE-TT-EEEEEE-SSS- CS
     Cupin_2 37 eeveleaGdsvyfpagtpHrfrNtgdep 64
                e+ ++eaG++ +fp+  +H ++  +++ 
  CTQ28939.1 67 ETLTIEAGQFGVFPPEKWHCIEALSEDT 94
                4899*****************9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       220  (0.0122706); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 995.76
//
Query:       CTQ28940.1  [L=403]
Description: Uncharacterized signaling protein CC_0091 (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-79  264.5   0.0      1e-78  264.2   0.0    1.1  1  EAL       EAL domain
    1.2e-34  119.4   0.0    2.3e-34  118.5   0.0    1.5  1  GGDEF     Diguanylate cyclase, GGDEF domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.2   0.0   1.1e-82     1e-78       2     238 .]     168     399 ..     167     399 .. 0.97

  Alignments for each domain:
  == domain 1  score: 264.2 bits;  conditional E-value: 1.1e-82
                 HHHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--CHHCC-C CS
         EAL   2 ealrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlspaslade 100
                 ++l +al+++e+++yyQP+ d+ t++++g+eal+rw hp +g ++p  f+p+ae+ gl+ +l +wvl+ a+++++++      ++k+s+n+sp +l++ 
  CTQ28940.1 168 DDLLQALAHDEFKVYYQPIADTVTREIYGYEALVRWFHPVRGAVPPTVFIPVAEKIGLINALGEWVLKTACAEAASW----ATPLKVSVNVSPIQLMNT 262
                 5799*************************************************************************....788*************** PP

                 CHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHH CS
         EAL 101 efleelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalia 199
                 ++ +++ e+l q+g++p+rL leites++++++     e+l +Lr++Gi+i++ddfgtgyssls+l+++p+d iK+drs++ +++e++++  +v+ +i+
  CTQ28940.1 263 SLTDTIIEVLHQTGLDPRRLDLEITESDVFNENTRSL-EILSQLREQGIQISIDDFGTGYSSLSRLSYFPFDKIKIDRSFVINIPEQKDDLDIVRLIIS 360
                 ***************************9965555555.************************************************************* PP

                 HHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 200 lakelgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 + k+l++++vaegVeteeql  l++lgcdlvQGyl++kp
  CTQ28940.1 361 MGKSLHMRIVAEGVETEEQLASLQALGCDLVQGYLIGKP 399
                 **************************************9 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   0.0   2.5e-38   2.3e-34       9     159 ..       1     146 [.       1     148 [. 0.96

  Alignments for each domain:
  == domain 1  score: 118.5 bits;  conditional E-value: 2.5e-38
                 SEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHHHHHHHHHH CS
       GGDEF   9 LpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaaelaerirrll 107
                 +pNR  + ++l++ ++++r  + + +v+l dld Fk++ndt+Gh++GD++Lq +a+rLs + + s++++RlggdeFa+l  + ++e    + er++ + 
  CTQ28940.1   1 MPNRLSFWQRLQEIVNQVRPYKGCAVVMLFDLDSFKDVNDTLGHDAGDKLLQDLASRLSFFRKTSETLYRLGGDEFAMLSYDLTEE---MALERANVIR 96 
                 59****************8889**************************************************************76...8999999999 PP

                 HCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTS CS
       GGDEF 108 aklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagr 159
                 +k+++p+++ + ++++ + iGi++++   +++++ l+k Ad alyeaKk+g 
  CTQ28940.1  97 EKISQPYQIYDAQINIDACIGIVISD--GESRTDYLYKCADLALYEAKKEGS 146
                 999**********************5..99999****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3495.94
//
Query:       CTQ28941.1  [L=189]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.01   14.6   0.3      0.014   14.1   0.3    1.1  1  Gsf2      Glucose signalling factor 2
      0.086   13.0   0.1        0.1   12.7   0.1    1.2  1  DUF4079   Protein of unknown function (DUF4079)


Domain annotation for each model (and alignments):
>> Gsf2  Glucose signalling factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.3   1.6e-06     0.014     148     233 ..      86     175 ..      79     177 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-06
        Gsf2 148 rlliklaeale...lkklaeklreeiqv.nsssvlaqilffvlhivkvllitlllklGlvnpisfnpikvlklkkkelskkkdelkeelk 233
                 r +++++++l+   ++  a++l+++i++ n +   +q l+++  ++ +lli++ ++lGl+     n ++  +++ k+l+++ +++ke+l+
  CTQ28941.1  86 RQILPVLSELDgplTSMAAATLTQDINIvNITHDKIQHLYYIYSVISILLIAMCITLGLLMLRQNNNLRRAHVRMKTLANDLQASKEKLQ 175
                 556666666552212345689*****9625666789***********************999999*******999999999999999875 PP

>> DUF4079  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.2e-05       0.1      57     122 ..      89     163 ..      24     167 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
     DUF4079  57 l.........lllvvlgaigglvllylrrgklfpssHlyaGlavvvLlalsaalvpeiqkgkstaRtlHialnvl 122
                 l         l  ++++++   ++ +  +++ +++  +++ ++ ++L+a+ + l   + ++++++R++H+ + +l
  CTQ28941.1  89 LpvlseldgpLTSMAAATLTQDINIVNITHDKIQHLYYIYSVISILLIAMCITLGLLMLRQNNNLRRAHVRMKTL 163
                 15556666666777777777777777777788888888899999999999999****************988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1212  (0.0676); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1453.45
//
Query:       CTQ28942.1  [L=165]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-06   25.3   0.0    2.2e-05   24.2   0.0    1.6  2  Oxidored_molyb  Oxidoreductase molybdopterin binding domain


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.14   2.5e+03     132     155 ..      20      42 ..      12      55 .. 0.77
   2 !   24.2   0.0   1.2e-09   2.2e-05      61     147 ..      65     139 ..      51     145 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.14
                     EE--CCCTTT-EEE-TTB-GGGSB CS
  Oxidored_molyb 132 epLppdhGyPlRlvvpglvgarsv 155
                     e+Lp   G P+ l + g +g+ +v
      CTQ28942.1  20 EKLPAPTGKPV-LTISGKIGNMNV 42 
                     78899999998.666777776655 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.2e-09
                     ----TTSEEEEEEEEEEHHHHHHHTTB-ETT..EEEEEEEEE-TCCTEEEEEEEHHHHCTTT-EEEEEETTEE--CCCTTT-EEE-T CS
  Oxidored_molyb  61 lqwgagavsnaeWtGvrlrdvLekagvkkpearhvvfegadeeleeskygasiplekaleddvlLAyemngepLppdhGyPlRlvvp 147
                     + w     +++++ G++l+++++ +g k    + + + +++       y++ ip++++++  v++A++mng+ ++     Pl +v p
      CTQ28942.1  65 TPW---YTGKVRFDGIPLSKLMDLVGAKG---TSARVLALN------DYTTIIPIDDFYKFPVIMALKMNGQYMRIRDKGPLFIVYP 139
                     567...7899*****************74...333333443......4***********88************99988888877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1299.29
//
Query:       CTQ28943.1  [L=439]
Description: shikimate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-27   94.0  52.3    6.7e-16   58.1  25.2    2.2  2  MFS_1     Major Facilitator Superfamily
    1.4e-21   76.9  29.7    2.1e-19   69.7  29.7    2.0  1  Sugar_tr  Sugar (and other) transporter
    8.3e-13   47.7  18.1    8.3e-13   47.7  18.1    2.8  2  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1  25.2   1.1e-19   6.7e-16      38     242 ..      69     287 ..      27     301 .. 0.73
   2 !   42.2  23.2   7.8e-15   4.7e-11      13     171 ..     268     431 ..     261     439 .] 0.79

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 1.1e-19
       MFS_1  38 ltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa....sslw.l..llvlrvlqGlgagalfpagaaliadwfpkeergraigllsa 128
                 +++ +l+  ++ +++G+++dr+Gr+r+l++++ +++++ ++++l++    +++w +  l++lr++qG++ g+ + ++a l ++ +p+ +++++ + +++
  CTQ28943.1  69 FGVGFLFRPLGGIIFGHFGDRLGRKRMLMMTVWMMGIAtACIGLLPsfnqIGWWaPvlLVFLRAVQGFAVGGEWGGAALLSVENAPQGKKAFYSSGVQV 167
                 223444558999**************************55665552344667774478***************************************** PP

       MFS_1 129 gfslGailgpllggllasslg........Wravfyilaivsllafvlfllllpeepperkrkspkeee....kgtgpaplvpawkallkdp.vlwilli 214
                 g+++G +l  +l +l++s+ +        Wr++f++  ++ l+a     l+++    e++ ++ ++      + +++ p+v+   all++p  ++++++
  CTQ28943.1 168 GYGVGLLLSTGLVSLISSLTSdqqflswgWRLPFLFSVVLVLIA-----LWIRNGMAESQEFEAQQSQgnapQMKKRLPVVE---ALLRHPgAFLLIIA 258
                 ****************9999999**9999***************.....566555555555544444334333335666666...66666614444444 PP

       MFS_1 215 alllfffgfsglltllplylqevlgls.g 242
                   l+  + +++++++   y  + lgl+  
  CTQ28943.1 259 LRLCELLTMYIVTAFALNYSTQNLGLPrE 287
                 44455555555555555566666666641 PP

  == domain 2  score: 42.2 bits;  conditional E-value: 7.8e-15
       MFS_1  13 silgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa....sslwlllvlrvlqGlgagalfpag 106
                 +i  +a+ l + +++lg+    +  +  l++ +++++++ +++l+drfGrrr++++g+l+  l+++ +++a    s +w+l+++ +l+ ++  +++ + 
  CTQ28943.1 268 YI-VTAFALnYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRIYITGALIGTLSGFPFFMAlesqSVFWILFFALMLANIAHDMVVCVQ 365
                 33.33333337778888777776667778888899*****************************555556667755566******************** PP

       MFS_1 107 aaliadwfpk.eergraigllsagfslGailgpllggllasslg..Wravfyilaivsllafvlflll 171
                 + +++++f    + + a   +++++ +G  ++p ++++l++  g  W++v + l++ +ll+++   +l
  CTQ28943.1 366 QPMFTELFGAsYRYSGAGVGYQVASVVGGGFTPFIAAALVTFSGgsWHSVALYLTAGCLLSALT--AL 431
                 **********4455555567999*****************777679****99999999999883..33 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7  29.7   3.6e-23   2.1e-19       8     427 ..      28     417 ..      22     431 .. 0.77

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 3.6e-23
                 HH.HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.....S CS
    Sugar_tr   8 gg.llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.....n 100
                 +g ++ +Yd+ ++g +++l    ++f+ +         ++   +++++ ++ + +G++++g +gdr+GRk  l++++ ++ i+++++++ ++      +
  CTQ28943.1  28 AGaVVDWYDFLLYGITAALVF-NREFFPQIGP--AMG-TLAAFATFGVGFLFRPLGGIIFGHFGDRLGRKRMLMMTVWMMGIATACIGLLPSFnqigwW 122
                 555777888888887777654.2222222222..221.34557888888888999*********************************99966889988 PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-....TTHHHHHHHCCHHHHHHHHHHGGGS--- CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsn....adgwrillglqlvpallllilllflPES 194
                 +  +l++ R + G++vG++ + + ++  E+Ap+ +  +  s  q+++ +G l+++++   + + ts+    ++gwr+++ +++v+ l+ l ++  + ES
  CTQ28943.1 123 APVLLVFLRAVQGFAVGGEWGGAALLSVENAPQGKKAFYSSGVQVGYGVGLLLSTGLVSLIsSLTSDqqflSWGWRLPFLFSVVLVLIALWIRNGMAES 221
                 88889999***********************************************9988885777779**********999999886666666666655 PP

                 HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HH CS
    Sugar_tr 195 PrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..ll 291
                              +e+ a+     + + ++ ++k+ l           + ll+  +   ++l++++l ++  lt + +  +   + ++nlgl  +  l 
  CTQ28943.1 222 -------------QEFEAQ-----QSQGNAPQMKKRLPVV--------EALLRHPG---AFLLIIALRLCELLTMYIVTAFALNYSTQNLGLPRElfLN 291
                 .............444444.....3334444555555444........45688888...78888888888888888777777777789*******6555 PP

                 HHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTT.THHHHHHHHHHSHTTTHHHHHH CS
    Sugar_tr 292 vtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgw.gpvpwvlvsElfpqsvRskala 389
                 + ++vg +  +++ + ++l drfGRR+++++Ga+++++  + +    ++l+++    s+  i f+al++a  a  +  +v   + +Elf  s R++++ 
  CTQ28943.1 292 IGLLVGGLSCLTIPCFAWLADRFGRRRIYITGALIGTLSGFPFF---MALESQ----SVFWILFFALMLANIAHDMvVCVQQPMFTELFGASYRYSGAG 383
                 6668999*******************************999994...666666....78888888888776665430345556889*********9998 PP

                 HHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHH CS
    Sugar_tr 390 iavavnwlanflisllfpiiteaigggyvflvfaglav 427
                 + ++   +a+++ + ++p+i+ a+  ++++  + ++a+
  CTQ28943.1 384 VGYQ---VASVVGGGFTPFIAAALV-TFSGGSWHSVAL 417
                 8876...578888888888888887.666555555554 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7  18.1   1.4e-16   8.3e-13      30     343 ..      56     373 ..      54     384 .. 0.80
   2 ?    0.4   2.1     0.031   1.8e+02     140     185 ..     387     432 ..     378     435 .. 0.79

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 1.4e-16
       MFS_2  30 lsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfiwllvtyill.rilytlfeipyvslvpvltk 127
                 + +a+ +l+++++  v  ++ p+ G++  +   r+Gr r  l++   +++++++ + + p++    ++ w + +++++ r +  +     +  ++ l+ 
  CTQ28943.1  56 IGPAMGTLAAFATFGVGFLFRPLGGIIFGHFGDRLGRKR-MLMMTVWMMGIATACIGLLPSF---NQIGWWAPVLLVFlRAVQGFAVGGEWGGAALLSV 150
                 566777777777778888999999***************.6666666777888888888886...5677777666666155555555568999999999 PP

       MFS_2 128 dyd..eRtsltsvrsflsvlggvlaailafllvlilgg.lkserkgylifaliialLmllgviivvlgtkervem.rkkekteqkeklslleqlkevfr 222
                 ++    +  + s   ++ ++ g+l +   + l+  l++  +    g+++  l+ ++L+l++ +i   g  e++e+ +++++  +++  + l+ +++++r
  CTQ28943.1 151 ENApqGKKAFYSSGVQVGYGVGLLLSTGLVSLISSLTSdQQFLSWGWRLPFLFSVVLVLIALWIR-NGMAESQEFeAQQSQGNAPQMKKRLPVVEALLR 248
                 98732444455555555555555555544444444444556666799999999999999999998.999999888555555566666778899****** PP

       MFS_2 223 nr.aflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlll..qpsnlllf 317
                 ++ afl++++l l+++l++++  + +l y t  lg  ++ + ++ l+v  ++ l+ip++++la r+g++++y+ gal+  + ++ ++++  ++s  +++
  CTQ28943.1 249 HPgAFLLIIALRLCELLTMYIVTAFALNYSTQNLGlPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRIYITGALIGTLSGFPFFMAleSQSVFWIL 347
                 *7689999***************************************9999***************************9998888888899999999** PP

       MFS_2 318 lvllviagfgvgvaallpwsmladvv 343
                 +++l++a+++  + + +   m+++++
  CTQ28943.1 348 FFALMLANIAHDMVVCVQQPMFTELF 373
                 **********************9987 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.031
       MFS_2 140 sflsvlggvlaailafllvlilgglkserkgylifaliialLmllg 185
                 +++sv+gg  + ++a +lv + gg  ++   yl+++ + ++L++l+
  CTQ28943.1 387 QVASVVGGGFTPFIAAALVTFSGGSWHSVALYLTAGCLLSALTALM 432
                 568999999999***********96666667777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3401.83
//
Query:       CTQ28944.1  [L=246]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.33
# Mc/sec: 2198.34
//
Query:       CTQ28945.1  [L=318]
Description: putative LysR-family transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-38  131.7   7.5    2.8e-38  131.4   7.5    1.1  1  LysR_substrate  LysR substrate binding domain
    6.9e-15   54.7   0.0    1.7e-14   53.5   0.0    1.7  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0016   18.2   0.0      0.004   16.9   0.0    1.7  1  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.026   14.1   0.1      0.062   12.9   0.1    1.6  1  HTH_50          Helix-turn-helix domain
      0.052   13.1   0.0        0.1   12.1   0.0    1.4  1  Sigma70_r4      Sigma-70, region 4
      0.077   12.8   0.0       0.21   11.4   0.0    1.7  1  HTH_23          Homeodomain-like domain
      0.097   12.2   0.1       0.19   11.3   0.1    1.4  1  HTH_24          Winged helix-turn-helix DNA-binding
       0.13   12.3   0.1       0.26   11.4   0.1    1.5  1  HTH_3           Helix-turn-helix
       0.15   11.9   0.0       0.24   11.2   0.0    1.4  1  HTH_8           Bacterial regulatory protein, Fis family
       0.15   12.0   0.1       0.33   10.9   0.1    1.5  1  HTH_11          HTH domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   7.5   1.5e-41   2.8e-38       2     208 ..      94     306 ..      93     307 .. 0.91

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 1.5e-41
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGG.S CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLar.g 93 
                     g+lrg+Lr++ap +++r+ l+p++a f+ ++P+++l+l+++d  +l+ l  eg +Dlair+ +    ++  +a pL++   + vas+d+ + r g
      CTQ28945.1  94 GPLRGTLRLTAPVAFSRQQLVPAIAPFLHQHPQLHLQLEVTD--RLVSLASEG-FDLAIRHCRReaLPDTHVAWPLCHTATLTVASADY-IRRhG 184
                     679***************************************..*********.*******9999989999******************.88879 PP

                     SSECGGGGCTSEEEEESTTST..HHHHHHHHHHCT..TEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESST....TCE CS
  LysR_substrate  94 epvsledLadeplilleegsg..lrdlledalrea..glkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpep....plp 180
                     +p ++edL++++++++++g     + ++ +   +a   +++++ + +n+ e+l+++v+aGlG+allp++ +r+++ +g ++   lp++     + 
      CTQ28945.1 185 RPETPEDLRHHQCLTYPRGPQrpQWTFASRQSPDArvTINVQGPFATNNSESLRDAVLAGLGVALLPDFSAREAIGRGLVQ-ELLPAWqpveVFA 278
                     999**************999976444444444344336666*************************************999.9999999996666 PP

                     EEEEEEEETTCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 181 relylvyrkgrelspavrafidflreal 208
                      +ly++++   + s+av++f ++l++ +
      CTQ28945.1 279 DRLYVIRPYTPRVSRAVETFSRYLKATF 306
                     9***********************9875 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   9.5e-18   1.7e-14       4      59 ..      13      68 ..      10      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 9.5e-18
                HHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  4 lrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l  +  + e++s trAAe+Lg+s +a+s+ i++LE+  g +L++Rt+r+++L + G
  CTQ28945.1 13 LYWLTVLEEQKSYTRAAEKLGISKSAISQKISELERVTGKTLVHRTTRSVSLSDDG 68
                66677888999******************************************999 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.2e-06     0.004       7      45 ..      17      55 ..      16      64 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.2e-06
                HHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TT CS
      HTH_30  7 aylenggnisatAkaLhvHrnTlryRLrrieellgldld 45
                + le++ +++++A++L++++  +++ +  +e+++g  l 
  CTQ28945.1 17 TVLEEQKSYTRAAEKLGISKSAISQKISELERVTGKTLV 55
                6799*******************************8775 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   3.4e-05     0.062      20      44 ..      19      43 ..      16      45 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.4e-05
      HTH_50 20 yekYpStRklAkrLGvShtaiankl 44
                +e+ +S   +A++LG+S++ai +k+
  CTQ28945.1 19 LEEQKSYTRAAEKLGISKSAISQKI 43
                778899999************9986 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.7e-05       0.1      17      42 ..      15      44 ..      12      46 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.7e-05
                H....TTT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4 17 f....geglTleEIgerlgiSrerVrqiek 42
                +    +e  ++   +e+lgiS+++++q ++
  CTQ28945.1 15 WltvlEEQKSYTRAAEKLGISKSAISQKIS 44
                455558899******************765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.21      16      35 ..      21      40 ..      15      49 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
      HTH_23 16 eGlsvreIAreLgvsrrTvy 35
                e +s++++A++Lg+s++ ++
  CTQ28945.1 21 EQKSYTRAAEKLGISKSAIS 40
                489**************997 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1    0.0001      0.19      20      43 ..      25      48 ..      21      48 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
      HTH_24 20 qreLAerlglSpstvnrrlkrLee 43
                ++  Ae+lg+S+s++++ + +Le+
  CTQ28945.1 25 YTRAAEKLGISKSAISQKISELER 48
                56669*****************96 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00014      0.26       7      28 ..      22      41 ..      18      55 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
                HTTHHHHHHHHHHTSSHHHHHH CS
       HTH_3  7 qlglsqeeLAeklGvsrstisr 28
                q+ +++  +AeklG+s+s+is+
  CTQ28945.1 22 QKSYTR--AAEKLGISKSAISQ 41
                555555..*************7 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014      0.24      13      41 ..      18      45 ..      16      46 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
                HHHHTTT-HHHHHHHHTS-HHHHHHHHHH CS
       HTH_8 13 ALertgGnkskAArlLGisRrtLyrKLkk 41
                +Le+++   ++AA+ LGis + +  K+ +
  CTQ28945.1 18 VLEEQK-SYTRAAEKLGISKSAISQKISE 45
                577777.789***********99999976 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00018      0.33      22      41 ..      29      48 ..      16      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00018
      HTH_11 22 AeeLnvSrrtvrrdIkaLee 41
                Ae+L++S++++ + I +Le 
  CTQ28945.1 29 AEKLGISKSAISQKISELER 48
                9*****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2400.64
//
Query:       CTQ28946.1  [L=129]
Description: putative tautomerase YrdN [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-27   96.0   0.1    4.7e-27   93.9   0.0    1.8  2  Tautomerase_2  Tautomerase enzyme
    5.1e-11   42.3   0.0    2.3e-08   33.9   0.0    2.1  2  Tautomerase    Tautomerase enzyme


Domain annotation for each model (and alignments):
>> Tautomerase_2  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.046   4.1e+02      36      66 ..       8      38 ..       2      38 .. 0.82
   2 !   93.9   0.0   5.3e-31   4.7e-27       1      82 []      38     118 ..      38     118 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.046
                   EES---HHHHHHHHHHHHHHHHHHH---GGG CS
  Tautomerase_2 36 lsegRseeqKkaLyralaerlaaklgirpeD 66
                   l egR+e++ k L  a  + + ++++++++D
     CTQ28946.1  8 LIEGRTEQEVKTLLDAAHRAVLRAFEVPERD 38
                   6689*********999999888888888776 PP

  == domain 2  score: 93.9 bits;  conditional E-value: 5.3e-31
                    --EEEEEEE-GGGEE--T.....TS-TT-EEEEEEEES---HHHHHHHHHHHHHHHHHHH---GGGEEEEEEEE-GGGEEET CS
  Tautomerase_2   1 drfqiitehepeelviddtylgieRsddlvvieitlsegRseeqKkaLyralaerlaaklgirpeDvfivlvenpkedWSfg 82 
                    dr+qi++e +++++vi+dt+lg +R++dlvv+++ +s +Rse+qK+++++ l e+la+++g++ +D++++++ n+k dWSfg
     CTQ28946.1  38 DRYQIVHENKAHHMVIEDTGLGLTRTRDLVVVRVYTS-PRSEAQKQRFFAILQEELAEHCGLSGDDLMVSIISNQKGDWSFG 118
                    9************************************.*******************************************8 PP

>> Tautomerase  Tautomerase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   2.5e-12   2.3e-08       1      58 [.       2      59 ..       2      61 .. 0.97
   2 !    6.8   0.0   0.00071       6.4      10      52 ..      75     117 ..      66     122 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 2.5e-12
                 -EEEEEESTCS-HHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEEE-TTSEEETTEEHH CS
  Tautomerase  1 PfvnIklvegrsaeqKaeLaervTealvealgaprsaivVvieEvpaenwgvggesve 58
                 P+++++l+egr+++  + L ++ + a+ +a+ +p+ + +++++E +a ++++++++++
   CTQ28946.1  2 PLLTFDLIEGRTEQEVKTLLDAAHRAVLRAFEVPERDRYQIVHENKAHHMVIEDTGLG 59
                 99****************************************************9876 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00071
                  CS-HHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEEE-TTSEEE CS
  Tautomerase  10 grsaeqKaeLaervTealvealgaprsaivVvieEvpaenwgv 52 
                   rs++qK+++ + + e l+e+ g++ ++ +V i   ++++w +
   CTQ28946.1  75 PRSEAQKQRFFAILQEELAEHCGLSGDDLMVSIISNQKGDWSF 117
                  469*************************999998888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 975.23
//
Query:       CTQ28947.1  [L=243]
Description: HPP family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-41  139.2  12.5    7.2e-41  139.2  12.5    1.9  2  HPP       HPP family
  ------ inclusion threshold ------
      0.057   11.9   0.1      0.093   11.2   0.1    1.2  1  Tic110    Chloroplast envelope transporter


Domain annotation for each model (and alignments):
>> HPP  HPP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.11   9.7e+02      24      46 ..      30      51 ..      19      60 .. 0.71
   2 !  139.2  12.5     8e-45   7.2e-41       2     122 .]      62     181 ..      61     181 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.11
         HPP 24 rnvvgGhlisalvGvaiaklfgl 46
                r++v+G  i+a +G+a++++f++
  CTQ28947.1 30 RHIVLGS-IGAGTGLAVTSMFSH 51
                5666665.678889999999974 PP

  == domain 2  score: 139.2 bits;  conditional E-value: 8e-45
         HPP   2 iaslGAsavllfavpesplaqPrnvvgGhlisalvGvaiaklfglsllwlaaalavalaialmlltrtlhPPagAtaliavlgke.ikelgwafllvpv 99 
                 ia++GAsavllf+vp+splaqP+++vgG+++sal+Gv++  l+++ +  la++la alaia m+++r+lhPP+gA+al+a+lg++ +++ g++f+l+pv
  CTQ28947.1  62 IAPMGASAVLLFGVPSSPLAQPWSIVGGNVLSALIGVTVGMLVPDAA--LACGLAAALAIAGMYFLRCLHPPGGAVALTAILGGAgVHSEGYHFVLTPV 158
                 8******************************************9644..5************************************************* PP

         HPP 100 llgslllvlvalllnnlserrYP 122
                 ll+sl+l+l+a+++nnl +rrYP
  CTQ28947.1 159 LLNSLMLALLAIVFNNLVGRRYP 181
                 **********************9 PP

>> Tic110  Chloroplast envelope transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1     1e-05     0.093      17     114 ..      98     210 ..      89     216 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1e-05
      Tic110  17 laasavvlaaalaaGyglglkvggsraa....alagavvlgaagaaaayaln............saaPevaavelhnlvvelddptkltkeeveaiask 99 
                 ++  ++v  aala G++++l+++g          +gav+l+a+ ++a +               s    ++a+ ++n +v+ + p  l  eev++ a  
  CTQ28947.1  98 VTVGMLVPDAALACGLAAALAIAGMYFLrclhPPGGAVALTAILGGAGVHSEgyhfvltpvllnSLMLALLAI-VFNNLVGRRYPHPLAAEEVKSRAVP 195
                 4555667789999999999999987665555534555555444333333333355667788887777555555.5666999****************** PP

      Tic110 100 yGvskqdeafkaelk 114
                  G+s + e+++a+l 
  CTQ28947.1 196 LGISVTREDIHAALL 210
                 **********99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1793.16
//
Query:       CTQ28948.1  [L=369]
Description: Adenosylhomocysteinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-34  117.7   0.1    1.1e-33  116.6   0.1    1.5  1  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin
    1.9e-13   50.1   0.1    3.3e-13   49.4   0.1    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      4e-12   45.9   0.3    6.4e-12   45.2   0.3    1.3  1  AdoHcyase        S-adenosyl-L-homocysteine hydrolase
    5.5e-07   29.3   0.8      1e-06   28.5   0.8    1.4  1  IlvN             Acetohydroxy acid isomeroreductase, NADPH-bi
    1.8e-05   24.8   0.2      6e-05   23.1   0.1    1.8  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    0.00021   21.7   0.5    0.00052   20.4   0.5    1.6  1  NAD_binding_7    Putative NAD(P)-binding
    0.00028   20.2   1.4    0.00055   19.3   1.4    1.5  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
    0.00093   18.5   1.4     0.0051   16.1   1.4    2.0  1  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
      0.002   18.4   0.4     0.0059   16.9   0.4    1.8  1  TrkA_N           TrkA-N domain
     0.0086   16.6   1.1      0.018   15.6   1.1    1.6  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.031   14.2   0.9      0.055   13.3   0.9    1.5  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
      0.034   14.1   1.6      0.034   14.1   1.6    2.5  4  ADH_zinc_N       Zinc-binding dehydrogenase
      0.034   13.7   0.0       0.05   13.2   0.0    1.2  1  DUF1188          Protein of unknown function (DUF1188)
      0.073   13.3   0.4       0.14   12.4   0.4    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   0.1   8.3e-37   1.1e-33      15     159 ..     182     323 ..     177     326 .. 0.96

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 8.3e-37
                    HHH-S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEEEE-SSSSSSB-HHHHCCS-TTEEEEE-S CS
  AdoHcyase_NAD  15 ratdvllaGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadivvtttGnkdiitlehlkkmkddaivcniG 110
                    ++t + l  k+++v+GyG vG+G aa+ k++G +v+v+e+dP   lqaa +G++vv l+e++++ad+v t+tG k++++++ l++ k  + + n+G
     CTQ28948.1 182 QTTHLTLHEKKVLVIGYGLVGQGVAAAAKAFGGQVMVAEIDPARRLQAAYDGWHVVDLQEAIASADVVATATGGKNVVNRQALDRAKAGVFILNVG 277
                    578888999*************************************************************************************** PP

                    STTTTBTHHHHHTTT-EEEEEETTEEEEE-TTS-EEEEEGGGSBCHHHT CS
  AdoHcyase_NAD 111 hfdseidvaaleanalkkeevkpqvdrvtlkdgkkiillaeGrllnlgc 159
                    h  +eid + l+++   +eev p ++ ++++d k++ lla+G +lnl++
     CTQ28948.1 278 HVAEEIDGDYLRQY--PQEEVMPYMNAYRMAD-KTVYLLANGSMLNLTA 323
                    ************99..7899**********98.6799**********87 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.1   2.6e-16   3.3e-13      23     128 ..     177     278 ..     165     290 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 2.6e-16
                   CHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTT CS
  2-Hacid_dh_C  23 wksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltpetrhlinaeelakmkk 119
                   w++  +++  +l++k+v +iG+G +Gq va  +kafg +v++ +  + ++ +++  g ++v+l+e++a++D+v  ++      ++++n+++l++ k 
    CTQ28948.1 177 WHTFFQTTHLTLHEKKVLVIGYGLVGQGVAAAAKAFGGQVMVAEIDPARRLQAAYDGWHVVDLQEAIASADVVATATG----GKNVVNRQALDRAKA 269
                   54455667779*********************************99998889999999**************988765....799************ PP

                   TEEEEESS- CS
  2-Hacid_dh_C 120 gailiNtaR 128
                   g++++N++ 
    CTQ28948.1 270 GVFILNVGH 278
                   ******985 PP

>> AdoHcyase  S-adenosyl-L-homocysteine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.3     5e-15   6.4e-12      15     141 ..       9     127 ..       3     144 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 5e-15
                 HHHHHHHCC-HHHHHHHHHCTTT-TTTT-EEEEES--SHHHHHHHHHHHHTT-EEEEE-SSTTT--HHHHHHHCCTTEEEE--TT--HHHHHHHHHHCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase  15 keielaekempglmalreeyaeekplkgariaGslhmtiqtavLietLvalGaevrWasCnifstqdeaaaaiaeagvpvfawkgetleeywwcieqal 113
                 ke++ a ++mp  +   +++a+   l g+r+a ++h+ ++   L++ + + Ga+v  ++Cn    qd++ a ++e+g+   aw+ ++  ++++  e+a+
  CTQ28948.1   9 KEVAWASQNMPRTL---RQVAALPDLSGVRLACCMHLDMKMIPLVQGILDKGAQVFLTTCNPTTVQDDVVAWLVERGAEACAWRNMSDADWQQSWEKAI 104
                 78888999999644...46777889************************************************************************** PP

                 S-SSTS-S-SEEEESSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase 114 kwaedekepnlilDdGGDltllvhkgvk 141
                 +w     +p  + + G D+t+l+h+  +
  CTQ28948.1 105 AW-----QPTHLCEMGADITTLLHQRGE 127
                 99.....57889999*********9544 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.8   7.8e-10     1e-06       2      67 ..     188     252 ..     187     278 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 7.8e-10
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE- CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmil 67 
                 l++kk+ viGyG  G+  a   +  g +v+v+  + ++   +A  +g++v++++ea+++advv++ 
  CTQ28948.1 188 LHEKKVLVIGYGLVGQGVAAAAKAFGGQVMVAEIDPAR-RLQAAYDGWHVVDLQEAIASADVVATA 252
                 899*****************************999885.5567789*****************875 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   4.7e-08     6e-05       9      95 ..     187     264 ..     180     276 .. 0.83
   2 ?   -2.1   0.0         3   3.8e+03       9      28 ..     304     323 ..     300     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.7e-08
                   ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSSS-SB-HHHH CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisataseepilekeev 95 
                   +l+ekkvl+iG G +++ va +  a g + v+va   ++ a++l   ++g      ++ +l+e++a+advv +at+ ++++ +++++
    CTQ28948.1 187 TLHEKKVLVIGYGLVGQGVAAAAKAFGGQ-VMVAE--IDPARRLQAAYDGW-----HVVDLQEAIASADVVATATGGKNVV-NRQAL 264
                   699*******************9999998.88885..77778888888666.....8899****************99865.55555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3
                   ..TT-EEEEES-SHHHHHHH CS
  Shikimate_DH   9 slkekkvlliGaGemaelva 28 
                   ++++k+v l+ +G m +l+a
    CTQ28948.1 304 RMADKTVYLLANGSMLNLTA 323
                   578999********999876 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.5   4.1e-07   0.00052       4      93 ..     187     278 ..     185     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.1e-07
  NAD_binding_7   4 dlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvk.laeeelekdlegadlviaatdd.relneriaeaakarrilvnvad 93 
                     l++kkvlv+G G v++  +    ++g +v v   + ++ l+  ++ ++  +l++ ++ ad+v +at   + +n++  + aka    +nv  
     CTQ28948.1 187 TLHEKKVLVIGYGLVGQGVAAAAKAFGGQVMVAEIDPARRLQAAYDgWHVVDLQEAIASADVVATATGGkNVVNRQALDRAKAGVFILNVGH 278
                    6899****************************55554477777777799******************8615567788888886666667655 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.4   4.3e-07   0.00055      28      77 ..     190     239 ..     178     276 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 4.3e-07
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEE CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvev 77 
                  + kvlviG G +G+  +a+ak++g +V+v +++par+ q    g ++v++
   CTQ28948.1 190 EKKVLVIGYGLVGQGVAAAAKAFGGQVMVAEIDPARRLQAAYDGWHVVDL 239
                  679*********************************99988766664444 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.4     4e-06    0.0051      25     111 ..     179     280 ..     173     297 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4e-06
                    HHHHHCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTS.............CCHHHHHCCSSEEEE-SS-TT-B-GGGS...-TT-EE CS
  THF_DHG_CYH_C  25 ellketgielegkkvvvvGrsnivgkplallLleknatVtvchskt.............kdlaeitreadivvvavGkpelikaemv...kegavv 104
                    ++ ++t+ +l++kkv+v+G + +vg+ +a+  ++ +  V+v++                 dl+e + +ad+v +a+G +++++++ +   k g ++
     CTQ28948.1 179 TFFQTTHLTLHEKKVLVIGYG-LVGQGVAAAAKAFGGQVMVAEIDParrlqaaydgwhvVDLQEAIASADVVATATGGKNVVNRQALdraKAGVFI 273
                    567889999999999999986.899999999988655555544322222222222222289**********************98886668999** PP

                    EE---EE CS
  THF_DHG_CYH_C 105 iDvGinr 111
                    ++vG+  
     CTQ28948.1 274 LNVGHVA 280
                    ***9855 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   4.6e-06    0.0059       1      45 [.     193     237 ..     193     271 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.6e-06
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEE CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevv 45 
                 +++iG+G vG+ +a   ++ gg +v+v + d++r  +++ +g +vv
  CTQ28948.1 193 VLVIGYGLVGQGVAAAAKAfGG-QVMVAEIDPARRLQAAYDGWHVV 237
                 68*****************999.6**********999999998877 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.1   1.4e-05     0.018       2      69 ..     193     253 ..     192     277 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-05
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlav 69 
                    + +iG+G +g+++a  + a g    +++va   + + a+ l++++  +   vd +ea+++advv  a 
     CTQ28948.1 193 VLVIGYGLVGQGVAAAAKAFG---GQVMVA---EIDPARRLQAAYD-GWHVVDLQEAIASADVVATAT 253
                    679******************...****99...6666677888887.777789**********98776 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.9   4.3e-05     0.055       1      36 [.     192     227 ..     192     269 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.3e-05
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseeale 36 
                 kv viG G++G+g+aa++ + g +V + +i++++  
  CTQ28948.1 192 KVLVIGYGLVGQGVAAAAKAFGGQVMVAEIDPARRL 227
                 689***************************987543 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.6     2e+03      94     123 ..      91     120 ..      50     124 .. 0.64
   2 ?   -3.3   0.0       6.7   8.6e+03      88     110 ..     172     194 ..     170     198 .. 0.74
   3 ?   14.1   1.6   2.6e-05     0.034       2      59 ..     201     258 ..     201     260 .. 0.88
   4 ?   -2.9   0.0       4.9   6.3e+03      75     100 ..     309     335 ..     303     350 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.6
                 EEEEEHHHHHHTT-EEEEE-SSCHHHHHHH CS
  ADH_zinc_N  94 eeefdlrnlllkeksilGsllgslreefke 123
                  ++ d+++ + k +  + ++l+ +  ++ +
  CTQ28948.1  91 MSDADWQQSWEKAIAWQPTHLCEMGADITT 120
                 334677777777777777777776666555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.7
                 CSCTSSEEEEEHHHHHHTT-EEE CS
  ADH_zinc_N  88 vGggkgeeefdlrnlllkeksil 110
                 vG+   ++ f++ +l+l+ek++l
  CTQ28948.1 172 VGLTAWHTFFQTTHLTLHEKKVL 194
                 67655566799999999999885 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSE CS
  ADH_zinc_N   2 vGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegv 59 
                 vG+ + ++Aka+G +v+++ +++ ++ +a+  G  +v++ +ea    + ++ +tgg++v
  CTQ28948.1 201 VGQGVAAAAKAFGGQVMVAEIDPARRLQAAYDG-WHVVDLQEAiASADVVATATGGKNV 258
                 8**********************9877766666.9999999999999999999988765 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 4.9
                 HHHCEEEEEEEEECSC.TSSEEEEEHH CS
  ADH_zinc_N  75 alkllkpgGrlvvvGg.gkgeeefdlr 100
                  + ll+ g +l + +g g   + fd+ 
  CTQ28948.1 309 TVYLLANGSMLNLTAGfGDSLNAFDVT 335
                 566777788887777744444445544 PP

>> DUF1188  Protein of unknown function (DUF1188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.9e-05      0.05      40     125 ..     187     274 ..     174     302 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.9e-05
                 -E..EEEEEES-CCCHHHHHHHHCCC.EEEEEEESSGGGGGGSSSTHHHHHHHHTTS---SEEEE---T.T-S-HHHHTT---SEEEE CS
     DUF1188  40 eleeknvlviGaYltGaaiakkLskk.eevtlvDiephlkellekdvefklsleevernadlviDltGl.GGvdpeklsklnakvliv 125
                 +l+ek+vlviG  l+G+++a + ++   +v++ +i+p+ +     d    ++l+e+  +ad+v   tG    v+ + l + +a v+i+
  CTQ28948.1 187 TLHEKKVLVIGYGLVGQGVAAAAKAFgGQVMVAEIDPARRLQAAYDGWHVVDLQEAIASADVVATATGGkNVVNRQALDRAKAGVFIL 274
                 45899******************9999**********99888888888999999999999*998877631446777788888888886 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   0.00011      0.14       1      41 [.     193     230 ..     193     273 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskekleala 41 
                      vl+iG+G vGq+va   ++ +    +++va+ + ++  ++a
       CTQ28948.1 193 VLVIGYGLVGQGVAAAAKAFGG---QVMVAEIDPARRLQAA 230
                      89************98777654...8999999999844443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2552.18
//
Query:       CTQ28949.1  [L=355]
Description: nicotinate-nucleotide dimethylbenzimidazole-P phophoribosyl transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.9e-115  384.6  14.1   4.4e-115  384.4  14.1    1.0  1  DBI_PRT   Phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> DBI_PRT  Phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.4  14.1  2.5e-119  4.4e-115       1     328 [.      11     345 ..      11     346 .. 0.97

  Alignments for each domain:
  == domain 1  score: 384.4 bits;  conditional E-value: 2.5e-119
                 ....XHHHHHHHHHHHCTBSSSTTTTHHHHHHHHHHHCHHCGTTS.---EEEEEEEEE-BGGGGGT--SS-TTHHHHHHHHHHCT-SHHHHHHHHCTEE CS
     DBI_PRT   1 iepldeeameaararldsltkPlgsLGrLeelavqlagiqgtlkp.elekkavlvfagDhGvaaegvsaypqevTaqmvenflaggaavnvlarqagae 98 
                 i+++d + m++a++++d l kP+gsLGrLe+lavqlag+ g +   +l +ka++v+++DhGv +egv+ +pq vTa  + n+++g+++v+vla+qaga+
  CTQ28949.1  11 IPQPDVAGMARAQHHIDGLLKPPGSLGRLETLAVQLAGLPGLQGQlALAEKAIVVMCADHGVWHEGVTPSPQGVTAIHAGNMVRGNTGVCVLAAQAGAR 109
                 789************************************9988777***************************************************** PP

                 EEEEEEE-S..--T..EE--SSSSB--TTTS-SS-HHHHHHHHHHHHHHHHHHHCTTECEEEEEEE-TTCHHHHHHHHHHHHT--HHHH---TTT--HH CS
     DBI_PRT  99 lrvvDvgva..dle..vdrkvrrgtaniakepAmtreeaeaaleaGieladeladagadllalGemGigNttaaaallaallglepeevvGrGtgldde 193
                 ++vvDvg++  +l+  ++ kv+rg++nia+++Am+r++ae  l a ++l ++la++g++ +++Ge+G++Ntt+aaa +++l+g++p++vvG G++l  +
  CTQ28949.1 110 VQVVDVGIDadPLPglINLKVARGSGNIARTAAMSRQQAEMVLLASMHLTRQLAADGVKAFGVGELGMANTTPAAATISVLTGSDPDAVVGCGANLPLA 208
                 *******877667798867******************************************************************************** PP

                 HHHHHHHHHHHHHHCH-..TT.HHHHHHHHS-HHHHHHHHHHHHHHHTT--EEE-SHHHHHHHHHHHHHSGGGGGGEEE-B--SSTCHHHHHHHHT--- CS
     DBI_PRT 194 glarKiavieqalarha..ekdplevLakvGGleiaalaGailgAaarripvvlDGfistaAalvAvrlapevkdyliashrsaepghkllleaLglep 290
                 +  +K+av++qa+a+++  ++d l+vLakvGG+++++++G+ilgAa+ ++pvvlDGf+s a+al+A+r+ap+++ yli+sh sae+g++++l+aLgl+p
  CTQ28949.1 209 QRGHKVAVVRQAIAHNQpnPADGLDVLAKVGGYDLVGMTGVILGAASCGLPVVLDGFLSYASALAACRMAPSAHPYLIPSHLSAEKGAQIALDALGLRP 307
                 ****************63255****************************************************************************** PP

                 SB-S---S-TTHHHHHHHHHHHHHHHHCCHS-BHHHHT CS
     DBI_PRT 291 lldlglrlGEGtGAalalplleaAaallnematfeeag 328
                 +ld+++rlGEG+GAala++ll+aA  ++n+m t ++++
  CTQ28949.1 308 YLDMDMRLGEGSGAALAMHLLDAASVMYNQMGTLAQSN 345
                 **********************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2930.62
//
Query:       CTQ28950.1  [L=246]
Description: cobalamin 5'-phosphate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-53  182.1  20.6    1.7e-53  181.9  20.6    1.0  1  CobS           Cobalamin-5-phosphate synthase


Domain annotation for each model (and alignments):
>> CobS  Cobalamin-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.9  20.6   9.3e-58   1.7e-53       1     204 []       8     243 ..       8     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 181.9 bits;  conditional E-value: 9.3e-58
        CobS   1 alsflTrlPvp..........elaralaffPlvGlllGlll.llallllllll.llaallavaalvlltgglHlDGlaDtaDglgsgrdrerrleImkD 87 
                 alsf++rlPvp          +++r++  fPlvGlllG+++ ++alll+     +laal+ v+al+lltgg+HlDGlaDt+Dg++s r+r+r+leIm+D
  CTQ28950.1   8 ALSFISRLPVParlsqgleieQYQRSIVTFPLVGLLLGAIAgAVALLLQPWCGvPLAALFGVLALALLTGGFHLDGLADTCDGIFSARTRDRMLEIMRD 106
                 79********988887776655588***************8776666666444677777779999********************************** PP

        CobS  88 srvGafGvlalvlvlllkvaalaala.........lllapvlsRlaallaiallpya.eeglgalfaeaqkk......lvllal.....avlllllall 165
                 sr+G+ G lal++vl++kv+++ +l+         l++a++++R +a+l++++ +ya e+glg+lf+++ +       +    +     a++l     l
  CTQ28950.1 107 SRLGTHGGLALIFVLVAKVLVVGELLlrdihpiaaLAAACAVGRGMAVLLMYRHRYArEKGLGNLFIGKISLqqtlvtM----AmaialATAL-----L 196
                 *******************99766656677788888899******************88********965555543320....1122232222.....1 PP

        CobS 166 ........laallvalllrrlarrklggvtGDvlGavieltellvll 204
                         l++l++ + l ++++r+lgg tGD+lGa+iel+ell+ll
  CTQ28950.1 197 glqglraaLITLVLIWGLGWALKRTLGGQTGDTLGAAIELGELLFLL 243
                 223333335666667788999************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 1933.96
//
Query:       CTQ28951.1  [L=107]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-46  154.3   9.4    7.5e-46  154.1   9.4    1.0  1  DUF496    Protein of unknown function (DUF496)
     0.0057   15.5   0.6     0.0063   15.3   0.6    1.1  1  FbpA      Fibronectin-binding protein A N-terminus (FbpA)


Domain annotation for each model (and alignments):
>> DUF496  Protein of unknown function (DUF496)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.1   9.4   8.4e-50   7.5e-46       1      92 [.       8      99 ..       8     100 .. 0.98

  Alignments for each domain:
  == domain 1  score: 154.1 bits;  conditional E-value: 8.4e-50
      DUF496  1 lkdvlelvrlarrknklkreiednekkirdnqkrvlllenlleyikedmsieeikaiienmkddyedrvddyiiknaelskerreiskklke 92
                ++dvle+vrl+rrknkl+rei+d ekkirdnqkrvlll+nl++yik+ ms+e i+ ii+ mk+dyedrvddyiiknaelskerr+iskklk 
  CTQ28951.1  8 FQDVLEFVRLYRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIASMKSDYEDRVDDYIIKNAELSKERRDISKKLKV 99
                79***************************************************************************************985 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.6     7e-07    0.0063     384     436 ..      16      68 ..      13      94 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-.-HHHHHHHHHHH CS
        FbpA 384 kyfkkykKlkraveaveeqieetkeeleylesveaaleqaesledleeikeEL 436
                 +++++ +Kl+r ++ ve++i+ +++++  l+++ + ++  +s e+++ i + +
  CTQ28951.1  16 RLYRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIASM 68 
                 79************************************998999998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1315  (0.0733449); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 855.43
//
Query:       CTQ28952.1  [L=352]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-15   56.8   6.2    2.1e-15   56.3   6.2    1.2  1  FUSC      Fusaric acid resistance protein family
    7.2e-14   52.0  10.6    1.2e-13   51.3  10.4    1.5  1  FUSC_2    Fusaric acid resistance protein-like
  ------ inclusion threshold ------
        0.1   12.8   0.2        0.1   12.8   0.2    2.4  2  GtrA      GtrA-like protein
       0.42   10.3   7.4        1.3    8.7   0.1    2.4  2  DUF21     Cyclin M transmembrane N-terminal domain


Domain annotation for each model (and alignments):
>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   6.2   4.7e-19   2.1e-15       2     301 ..      20     327 ..      19     346 .. 0.81

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 4.7e-19
        FUSC   2 wlFalKtllAalLALyiAlrleLpqPywAmtTVfiVsqPls..GavlsKslyRllGTllGaaaavllvalfvqapllfllalalWiglclalslldrnf 98 
                 +++ ++ +lA +L+ ++  +l+ p+  w ++T ++V+ P s  G v+ +++ R+ GT+lG a +++ + l   +  l++l++a+ ++lc +l+l     
  CTQ28952.1  20 VVHGVRIALAFVLTFLLVRLLNVPEGTWPLITLVVVMGPISfwGNVVPRAFQRIGGTILGSALGLVALKLELISLPLMVLWCAAAMFLCGWLAL---GK 115
                 67889***********************************999***************************************************...89 PP

        FUSC  99 rsYafvLAGYTaalialpavadPetvFdiAvaRvseIvlGIvCaalVsalvfPrsvapalrarlrallrdalalaaaalagee.gaeareaararlaad 196
                 + Y ++L G+T++ +    v  P +  ++A++R  +++ G + a+l    ++P+++  + r ++++ + ++ +l +a  +++  ++ + e+++++ + d
  CTQ28952.1 116 KPYQALLIGITLSVV----VGAPPGDMHTALWRSGDVIFGSLLAMLFTG-IWPQRAFIHWRIQMASYVTNFNRLYQAGFSPNLvDRPRLEKHLQQALND 209
                 9***********998....689**********************99877.7****************************99862667779********* PP

        FUSC 197 ilalealrsqaayesprirararalrrllsrmlallallsslarlla.....rlraeeaaavpe.laallaelaal.......eaaaaaealeaalaal 282
                 ++ + +l++ a+ e++   a  +a++  ++ ++ +l l    ++  +      l+a+  +++++  +++l  +a++         +a  e+l++ + +l
  CTQ28952.1 210 VVKMRGLITPASKETHIQKAIFEAIQTVSRNLVCMLELQINAWWATRpghfvMLNAHTLRETQQmTQQTLLSIAHAlyegnpqPVRANNEKLTEIVLEL 308
                 ***************998888888888888887777766666655541112234455444444456666666666666555553333455555555555 PP

        FUSC 283 rarlralrraleadadtaa 301
                 r+ l+++  +  a+++ ++
  CTQ28952.1 309 RQLLKEQGDDGLAETPVHG 327
                 5555555554445555555 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3  10.4   2.7e-17   1.2e-13       3     127 .]      34     158 ..      26     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 2.7e-17
      FUSC_2   3 vliaellglwrgeWalitaaivlsp..tlgasltravqRilGtvlGavlallllyllpgnlala.llvfll.vfli.afflkrnyalafifltllalll 96 
                 +l+++ll+ + g W lit ++v+ p    g+++ ra+qRi Gt+lG++l+l++l l   +l+l  l ++ + ++++  ++ k++y +  i +tl++++ 
  CTQ28952.1  34 FLLVRLLNVPEGTWPLITLVVVMGPisFWGNVVPRAFQRIGGTILGSALGLVALKLELISLPLMvLWCAAAmFLCGwLALGKKPYQALLIGITLSVVVG 132
                 588999*******************9999*************************877766544413333331444423466899************999 PP

      FUSC_2  97 yslaagsgnpieialhRlldvliGiliallv 127
                 +       +++++al R  dv++G+l+a+l+
  CTQ28952.1 133 AP-----PGDMHTALWRSGDVIFGSLLAMLF 158
                 96.....568999***************986 PP

>> GtrA  GtrA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   2.3e-05       0.1      62     112 ..      13      64 ..       3      66 .. 0.89
   2 ?    0.1   0.5      0.21   9.4e+02      17      42 ..     105     131 ..      81     132 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.3e-05
        GtrA  62 kqflkFvlvsllglllnllilwllveklgleallaklvgiival.vlnyvls 112
                 + + ++ +v+++ ++l +++++llv+ l++++ ++ l+ ++v++  ++++++
  CTQ28952.1  13 RLYRHYRVVHGVRIALAFVLTFLLVRLLNVPEGTWPLITLVVVMgPISFWGN 64 
                 5566899*************************************88**9986 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.21
        GtrA  17 lllllel..lglsyllAnaiafivailf 42 
                 ++l+  +  lg++++ A +i++++++++
  CTQ28952.1 105 MFLCG-WlaLGKKPYQALLIGITLSVVV 131
                 22222.1247889999999999999886 PP

>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   4.3     0.026   1.2e+02      63     135 ..      24      97 ..      20     116 .. 0.79
   2 ?    8.7   0.1   0.00029       1.3      90     133 ..     146     191 ..     102     194 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.026
       DUF21  63 vnillsalatalfvellae.galavviatvivtllilvfgEilPkslalkyaekialalapplrvlmvllyPlv 135
                 v i+l+ ++t+l+v+ll   ++++ +i++v+v   i + g ++P+++ +     + +al  +   l  +  Pl+
  CTQ28952.1  24 VRIALAFVLTFLLVRLLNVpEGTWPLITLVVVMGPISFWGNVVPRAFQRIGGTILGSALGLVALKLELISLPLM 97 
                 679999***********889999999999999*************98766555555555555555555555555 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00029
       DUF21  90 t.viv.tllilvfgEilPkslalkyaekialalapplrvlmvllyP 133
                   vi+ +ll ++f+ i P++ +++   ++a+++  + r+++  ++P
  CTQ28952.1 146 GdVIFgSLLAMLFTGIWPQRAFIHWRIQMASYVTNFNRLYQAGFSP 191
                 138999**************************99988887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2540.68
//
Query:       CTQ28953.1  [L=157]
Description: DNA gyrase inhibitor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-20   73.0   0.2    3.5e-20   72.9   0.2    1.0  1  GyrI-like  GyrI-like small molecule binding domain
    5.5e-19   68.8   0.0    6.2e-19   68.6   0.0    1.0  1  Cass2      Integron-associated effector binding protein


Domain annotation for each model (and alignments):
>> GyrI-like  GyrI-like small molecule binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.2     4e-24   3.5e-20       1     154 [.       1     152 [.       1     153 [. 0.97

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 4e-24
                 .CEEEEEE--EEEEEEEEEEEHCCCHHHHHHHHHHHHHHHHHHCTT--SSEEEEEEEEE-STTCCCEEEEEEEECCCCC...CGBTTSEEEEE-SEEEE CS
   GyrI-like   1 meveivelpafrvvgirhrgdyneeggipklweelyawaseiklsnavspligvssdepeetedeelkydigvtveirv...egpeglefleipageyA 96 
                 m+++i +l  ++++g++ +g++ ++  +++ +e+l+ w++ +       ++++v++d+pee+++e+l++ ++v+v+++     ++eg++   i +g yA
  CTQ28953.1   1 MNYSITTLGKKTIAGFHLVGPWDHT--VKQGFEQLMMWVENHQV--PAREWVAVYYDNPEEVPAEKLRCATAVAVDEDYvipANSEGVILAAIAGGDYA 95 
                 89**********************9..****************9..89****************************998******************** PP

                 EEEEECEGGGHHHHHHHHHHTHHHHTT-EEEESEEEEEEECCCTSSCGCEEEEEEEEE CS
   GyrI-like  97 vfrhkGpyddlqatyaklygewlpesgyerrdgpsiEiYlsdprereeelkteiyipv 154
                 ++r +    d +  +  ++     +  y+ +  p++E+Yl+d    ++++++++y+pv
  CTQ28953.1  96 CARARVVDYDFATPWMQFFDSLQQSTAYRIAPQPCFEVYLNDGN-HDGYWDIDMYVPV 152
                 ********************77777778***************9.************9 PP

>> Cass2  Integron-associated effector binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   6.9e-23   6.2e-19       1     149 []       4     152 ..       4     152 .. 0.92

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 6.9e-23
                 EEEEE--EEEEEEEEETTCCCCH...HHHHHHHHHHHHHHHCTTSBSTEEEEEEEC-TT..-CCGEEEEEEEEE-TT...SSS-TT-EEEEE--EEEEE CS
       Cass2   1 rIvelpeftvaGiryegskeeedlnkeigklwreflekgrlkkikkdkrvfgiyhdyes..eenkfsyyagvevpsd...sevpeglvkkeiPggkYav 94 
                 +I++l + t+aG++ +g+++++     +++ +++++ +++ + + +  +++++y+d+++  +++k+++ ++v v++d     ++eg++   i gg Ya 
  CTQ28953.1   4 SITTLGKKTIAGFHLVGPWDHT-----VKQGFEQLMMWVENH-QVPAREWVAVYYDNPEevPAEKLRCATAVAVDEDyviPANSEGVILAAIAGGDYAC 96 
                 699*******************.....5***********555.6689******************************999999999************* PP

                 EEEESSSTT-HHHHHHHHHHCHCCHCTEEE-SSEEEEEE..STTHHHTEEEEEEEEE CS
       Cass2  95 ftiegdfeedlaeaweaiygellpnsnyerrggpdfEvy..keepaekseielyIPv 149
                    +  ++ d+a  w +++ +l++++ y+ + +p+fEvy  + +++++++i++y+Pv
  CTQ28953.1  97 ARAR-VVDYDFATPWMQFFDSLQQSTAYRIAPQPCFEVYlnDGNHDGYWDIDMYVPV 152
                 ***9.44567999**************************54444455*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1202.54
//
Query:       CTQ28954.1  [L=387]
Description: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-96  323.0   0.0    1.5e-96  322.5   0.0    1.1  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase
    9.7e-25   86.6   0.3    1.5e-24   86.0   0.3    1.3  1  PBP5_C           Penicillin-binding protein 5, C-terminal dom
    2.4e-11   43.6   0.0    3.3e-11   43.2   0.0    1.2  1  Beta-lactamase2  Beta-lactamase enzyme family
  ------ inclusion threshold ------
       0.02   14.2   0.2        0.9    8.7   0.0    2.3  2  Beta-lactamase   Beta-lactamase


Domain annotation for each model (and alignments):
>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.5   0.0  3.3e-100   1.5e-96       5     240 ..      28     261 ..      25     262 .. 0.98

  Alignments for each domain:
  == domain 1  score: 322.5 bits;  conditional E-value: 3.3e-100
                    S---.--SSSEEEEEETTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCS..GTTSSTTS-TTT-EEEHHHHHH CS
  Peptidase_S11   5 asepleiaaksailvdantGkvLyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgn..nkevsniflkkgskvsvkdLle 98 
                    +++p +i+a+s++l+d++tG+vL++ n+++++++ASltKlmT y+v +a+++++++ dd+vt+++da+a+gn  + ++s +flk+g++vsv+dL +
     CTQ28954.1  28 VAPP-SIQAGSWVLMDYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITFDDIVTVGKDAWAKGNpvFDGSSLMFLKPGDRVSVRDLSR 122
                    5667.9******************************************************************999********************* PP

                    HHHCC--HHHHHHHHHHHHSSHHHHHHHHHHHHHHTT-TT-B-SSSSSTSHTTCBB-HHHHHHHHHHHHHHHHHHHHGGGESEEEETTECTEEEES CS
  Peptidase_S11  99 gllvssgNdAavalAekiaGsekaFvkmMnkkakelGlkntkfvnptGLdnenqvssArdlailakallkdlpeelkitkeksltfngikklnykn 194
                    gl+v+sgNdA+valA+++aG++++Fv +Mn+++++l+l++t+f++++GLd+++q+ssA+dla+l++a+++ +p++++++++kslt+n    ++++n
     CTQ28954.1 123 GLIVDSGNDACVALADYVAGGQPQFVALMNQYVEKLHLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDVYHMYSQKSLTWN---GITQQN 215
                    **************************************************************************************9...9***** PP

                    STGGGGTTTSEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEES CS
  Peptidase_S11 195 knkllyrktlnvdglktGytkkAgeclvatavenqmrlisVvlnak 240
                    +n+ll++kt+nvdglktG+t+ Ag +l+a+av++q rli+Vv++a+
     CTQ28954.1 216 RNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAD 261
                    ********************************************98 PP

>> PBP5_C  Penicillin-binding protein 5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.3   3.3e-28   1.5e-24       1      91 []     281     372 ..     281     372 .. 0.99

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 3.3e-28
                 EEEEEEEXTTCESEEEEEESSSSSEEEEEESSXEEEEEETTHCCTEEEEEEE.SSSEESGBGTTSEEEEEEEEETTEEEEEEEEEESSXBXB CS
      PBP5_C   1 FetkklykkgkvvktvsvlkgkekeVplvakediyvtvkkgekkklkakvel.kksleapikkGqkvGklkvyldgkliakvplvakedvek 91 
                 F+t+++++kg++v+t ++++g++++++l++++d+++ ++k e   +kak++l kk+leapi+++q vG +++y ++k+++ +plv++e++ k
  CTQ28954.1 281 FDTVQVLQKGQKVGTERIWYGDKEQIKLGTDQDFWLALPKAEVSRIKAKYVLdKKDLEAPIAANQRVGEISLYDGDKVVGHYPLVTLESINK 372
                 99**************************************************************************************9975 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   7.3e-15   3.3e-11       2     180 ..      44     238 ..      43     263 .. 0.76

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 7.3e-15
                      TTTSEE.EESTTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHH......HTSSSTSGGGST.TSEEEHHHHHHHHHHTT-HHHHHHH CS
  Beta-lactamase2   2 dtgeel.gvnadeefpaaStiKvpillalleavlegklslderltltaed......ivggsgilqklp.gktlslrdlltlmiavSDNtAtnlL 87 
                      +tg++l + n++++ + aS+ K++  + + +a+++ ++  d+ +t+ +++      + +gs  + +l+ g+++s+rdl +  i++S N A  +L
       CTQ28954.1  44 TTGQVLtAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITFDDIVTVGKDAwakgnpVFDGSSLM-FLKpGDRVSVRDLSRGLIVDSGNDACVAL 136
                      689999556*****************************************77666444666655.555266*********************** PP

                      HHHH..THHH....HHHHHHHCTHTTSB--SHTTCCHHHTTSSTTEE-HHHHHHHHHHHHHTTSSHHH....HHHHHHH.T-STTTTTTTTTT. CS
  Beta-lactamase2  88 idrl..glea....vnawlkelglretrlrrklpdleaadkdkrntttardlarllealargellspe....elleils.nqqfrdrlaaglp. 169
                       d++  g+ +    +n++ ++l+lr+t++++ +++l+     +   ++a dla l +a++ ge+        + l++    qq+r++l  + + 
       CTQ28954.1 137 ADYVagGQPQfvalMNQYVEKLHLRDTHFET-VHGLD----APGQHSSAYDLAVLSRAIIHGEPDVYHmysqKSLTWNGiTQQNRNGLLWDKTm 225
                      ****964555222267888888888888774.45665....5999*****************87766665666777755567777766644334 PP

                      ..TTSEEEEEEEE CS
  Beta-lactamase2 170 ..egvrvahKtGe 180
                        +g++  h +G 
       CTQ28954.1 226 nvDGLKTGHTSGA 238
                      5888888888887 PP

>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0002       0.9      53      99 ..      61     120 ..      34     122 .. 0.83
   2 ?    3.3   0.1    0.0092        41     165     250 ..     148     270 ..     127     294 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0002
                     GGGHHHHHHHHHHHHHHTTSSCTTSBG....GGTST...........TCTTGGGTTEBHHHH CS
  Beta-lactamase  53 aSvtKtftaaavlqlveeGkldLddpV....skylP...........efagpgkgkiTlrdL 99 
                     aS+tK++t+ +v + ++  +++ dd V    +  +             f +pg++ +++rdL
      CTQ28954.1  61 ASLTKLMTGYVVDRAIDSHRITFDDIVtvgkD-AWAkgnpvfdgsslMFLKPGDR-VSVRDL 120
                     8**************************99962.3333666777777778999999.999998 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0092
                     HHHHHHHTTTTTTSTTEESSTTGGGGGGBEEEEEEETCEEECSCETTHHHHC.......................................TTTB CS
  Beta-lactamase 165 eqllreeilrpLgmkdtelgppesgdprdaagytgngpearappanlpaeae.......................................gagg 220
                       l+ +++ +  +++dt++ +    d++ +++++ + +   ++  ++ ++ +                                       ++ +
      CTQ28954.1 148 VALMNQYVEKL-HLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPDVYhmysqksltwngitqqnrngllwdktmnvdglktghtsgAGFN 241
                     44444444444.66666666666666666666644444444444444444445666666666666666666666666666666666666655555 PP

                     EEEEHHHHHHHHHHHHHCCSSSSHHHHHHH CS
  Beta-lactamase 221 listardlarflglalegglllsaetlaql 250
                     li++a d  r l  a  +g+ + +   +q+
      CTQ28954.1 242 LIASAVDGQRRL-IAVVMGADSPKGREQQA 270
                     555555555555.22333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2916.50
//
Query:       CTQ28955.1  [L=474]
Description: exonuclease I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.6e-101  336.7   0.6   9.4e-101  336.4   0.6    1.1  1  Exonuc_X-T_C  Exonuclease C-terminal
    2.5e-30  106.2   0.0    5.2e-30  105.2   0.0    1.6  1  RNase_T       Exonuclease
  ------ inclusion threshold ------
      0.065   14.1   1.0       0.55   11.1   0.2    2.6  3  CTD_bind      RNA polymerase II-binding domain.


Domain annotation for each model (and alignments):
>> Exonuc_X-T_C  Exonuclease C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.4   0.6  1.6e-104  9.4e-101       1     268 [.     211     471 ..     211     472 .. 0.99

  Alignments for each domain:
  == domain 1  score: 336.4 bits;  conditional E-value: 1.6e-104
                   TSHHHHHTT--TTTT--EEEE-GGG-GGGTTEEEEEEEEE-SS-TTEEEEEETTS--HHHHHS-HHHHHHHHTSTTTTT.TSS----EEEEETTS-- CS
  Exonuc_X-T_C   1 RkKkkvaklidlasrkpllHvsgmfgaergcialvlplawhptnknavivvDLaeDpsellelsaeelrerlftkkeelaegeerlplklihiNkcP 97 
                   R+K+k+a+lid++++kpl+Hvsgmfga+rg+++lv+plawhp+n+navi+vDLa D+++llel+a++lrerl+t+++el  +    p+kl+h+NkcP
    CTQ28955.1 211 RNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLAWHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAEL-GDLPAAPIKLVHLNKCP 306
                   99*****************************************************************************.899************** PP

                   EEEEGGGS-HHHHHHHT--HHHHHHHHHHHHH-THHHHHHHHHHTTS--S---SSGGGTGGGS---HHHHHHHHHHHHS-GGGTTTST-TTSSTHHH CS
  Exonuc_X-T_C  98 vlaplkvLkeedaerlgiDleaclknlkllraqkelaeklaevfaeeeefeasedvdlqLYggFfsdaDrrlmekirrlspeklaelelkfeDeRle 194
                   vla++++L+++da+rlgi +++cl+n++llra+++++ek+ +v+ae+e+f +se+vd+qLY+gFfsdaDr++m+++ +++p +l +l+++f D+R+e
    CTQ28955.1 307 VLAQANTLRPQDADRLGISIQRCLENAQLLRANPQVREKVVAVYAEAEPFVPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIE 403
                   ************************************************************************************************* PP

                   HHHHHHHHHH-GGG--HHHHHHHHHHHHHHS-HH......HHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHH CS
  Exonuc_X-T_C 195 eLlfryraRnfpetLseeEqkrWeefckqrLseeekgasltleeyfeeleelaeeaekdeeklklLkaLyeYae 268
                   +Llf yraRnfp tL+e+Eq+rW e+++q ++ e       l++y++el+ l++++++d+ekl+ LkaL +Ya+
    CTQ28955.1 404 RLLFNYRARNFPGTLDEHEQQRWLEHRRQVFTPE------FLQAYADELQMLYQQYADDKEKLAQLKALWQYAQ 471
                   *********************************7......59******************************98 PP

>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   8.7e-34   5.2e-30       2     161 ..      12     189 ..      11     193 .. 0.86

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 8.7e-34
                 EEEEEESSSTTCTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHH..HHHHHHHHHHHHTCCCETT.TCEEEE CS
     RNase_T   2 viDlEttgldakekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfke..vleefkellrklallvahn.aafdvg 97 
                 ++D+Et+g+++   d++ ++aai++d+++n+ige+ +fy+kp +++  +++++++tgit++++  ++ +++  + + ++ +  + +++v++n ++fd +
  CTQ28955.1  12 FHDYETFGTSP-SLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITGITPQEALAKGDNEAafARRIHDLFTVPQTCIVGYNnVRFDDE 109
                 79*********.8*************************************************88888888877788888899999************** PP

                 SSHHHHHHHHHHHHH....HHHHCSEHCECHHHHHHHHHC.............HHHHHHHHHTTCHSSSSTSSHHHHHHHH CS
     RNase_T  98 flraadkrilkkevp....krnqfldtlildkatlkelar.............tsldklaeklgleedgraHrAldDaeat 161
                 ++r+ ++r+++ +++    ++n+ +d l++++a+++ +++              +l+ l    g+e+++ aH+A++D+ at
  CTQ28955.1 110 VTRNIFYRNFYDPYAwswqHDNSRWDLLDVMRACYALRPEgiawpendeglpsFRLEHLTVANGIEHQN-AHDAMADVYAT 189
                 ************999*****************************5555444444444444445555544.46666665555 PP

>> CTD_bind  RNA polymerase II-binding domain.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.73   4.4e+03      26      55 ..     195     221 ..     170     222 .. 0.65
   2 ?   -0.7   0.0      0.44   2.6e+03      22      53 ..     317     349 ..     307     351 .. 0.78
   3 ?   11.1   0.2   9.3e-05      0.55      18      58 ..     429     468 ..     421     471 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.73
    CTD_bind  26 aFapvlpeafadaykkapekikkklkrlln 55 
                   ++  p++f ++y++    +k+kl  l++
  CTQ28955.1 195 LVKTRQPRLFDYLYSH---RNKRKLATLID 221
                 4455556778888863...47788887776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.44
    CTD_bind  22 efapaFapvlpeafadayk.kapekikkklkrl 53 
                 + a++++  +++ +++a   +a++++++k+  +
  CTQ28955.1 317 QDADRLGISIQRCLENAQLlRANPQVREKVVAV 349
                 5577888888889988877889999**999765 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 9.3e-05
    CTD_bind  18 kqkdefapaFapvlpeafadaykkapekikkklkrllniWe 58 
                 +++++f+p+F ++  + ++ +y+ +  ++k+kl +l  +W+
  CTQ28955.1 429 HRRQVFTPEFLQAYADELQMLYQ-QYADDKEKLAQLKALWQ 468
                 44689*****************8.5777************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3502.86
//
Query:       CTQ28956.1  [L=700]
Description: protein chain elongation factor EF-G, GTP-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.8e-65  218.1   0.0    1.1e-64  217.5   0.0    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    7.2e-48  161.4   0.0    1.3e-47  160.6   0.0    1.4  1  EFG_IV       Elongation factor G, domain IV
    3.1e-36  123.3   0.0    6.8e-36  122.2   0.0    1.6  1  EFG_II       Elongation Factor G, domain II
    1.3e-31  108.5   0.2    3.1e-31  107.3   0.2    1.7  1  EFG_C        Elongation factor G C-terminus
    2.3e-18   66.3   0.2    8.7e-18   64.5   0.1    2.1  2  GTP_EFTU_D2  Elongation factor Tu domain 2
    1.5e-06   28.0   0.0      3e-06   27.1   0.0    1.4  1  RF3_C        Class II release factor RF3, C-terminal domain
  ------ inclusion threshold ------
      0.026   14.6   0.0      0.048   13.7   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.5   0.0   4.5e-68   1.1e-64       2     194 .]       9     288 ..       8     288 .. 0.93

  Alignments for each domain:
  == domain 1  score: 217.5 bits;  conditional E-value: 4.5e-68
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE.....TTCSSEEEEEEEESSSGGGHHHHHHHHHT-S CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle.....ketkkylinliDtPGHvdFskevirglrvlD 95 
                 r+rnigi +h+D+GKtT+t+r+l++tg+ +k ge++++++++D++++E+ergiTi+saa+s++     ++ + ++in+iDtPGHvdF+ ev+r++rvlD
  CTQ28956.1   9 RYRNIGISAHIDAGKTTTTERILFYTGMSHKLGEVHDGAATTDWMAQEQERGITITSAAVSCFwpgmdRSFEPHRINIIDTPGHVDFTIEVERSMRVLD 107
                 78***********************************9****************************9779***************************** PP

                 EEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH......................................... CS
    GTP_EFTU  96 gavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk......................................... 153
                 gav+v d+v Gv+pq+e+v+r+a+k++vp+  f+NKmDr++a++ ++v+++ ++l+++                                         
  CTQ28956.1 108 GAVMVYDSVGGVQPQSETVWRQANKYHVPRLAFVNKMDRPGADFFRVVQMMIDRLKANpvpivipigaeehftgvvdlvkmrailwddatqgmtfsygp 206
                 *******************************************************999***************************************** PP

                 ..........................................HHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSHH CS
    GTP_EFTU 154 ..........................................eeklekygekgekevpvvfgSalkgegvktllealvellps 194
                                                            + l++ ++kg ++  v++gSa+k++gv+ +l+a+vel+ps
  CTQ28956.1 207 vpdellataqqwrekmvsaaaeasdelmdkyletgeldeaeiVAGLRQRTVKG-EIQAVLCGSAFKNKGVQRMLDAVVELMPS 288
                 *************9999999999955555555555555555544444455555.69***********************9986 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.6   0.0   4.9e-51   1.3e-47       1     120 [.     484     603 ..     484     604 .. 0.99

  Alignments for each domain:
  == domain 1  score: 160.6 bits;  conditional E-value: 4.9e-51
                 TCCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTTTTSSEEEEE--STCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE--TTT CS
      EFG_IV   1 pqVayrEtirkpvkereeklkkqsggdgqyakvileiePleegsgnefvdetkggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslhevd 99 
                 pqV yrEt+rk+v+++e+k+++qsgg+gqy++v+l++ePle+gsg++f+d+tkgg+vp+eyi++vekG++ea+ +G+lag+pv+dvk+tL+ gs+h+vd
  CTQ28956.1 484 PQVTYRETLRKKVTDVEGKFVRQSGGKGQYGHVVLTLEPLEPGSGFVFEDATKGGVVPREYIPSVEKGLREAMGTGVLAGYPVVDVKATLTFGSYHDVD 582
                 8************************************************************************************************** PP

                 C-HHHHHHHHCHHHHHHHHCC CS
      EFG_IV 100 sseaafkpaarralkeallkA 120
                 sse+af++aa ++++e+++kA
  CTQ28956.1 583 SSEMAFRMAAIFGFREGARKA 603
                 ********************9 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   0.0   2.6e-39   6.8e-36       1      74 [.     409     482 ..     409     483 .. 0.98

  Alignments for each domain:
  == domain 1  score: 122.2 bits;  conditional E-value: 2.6e-39
      EFG_II   1 fPePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelg 74 
                 fPePvislaiepk+kad++k++ aL+rl++EDp++r+++dee+++ti+sGmGelHlei+v+r+kre++ve+++g
  CTQ28956.1 409 FPEPVISLAIEPKTKADQEKMGIALQRLAAEDPSFRLHTDEESGQTIISGMGELHLEIIVDRMKREFGVEANIG 482
                 8**********************************************************************997 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.2   1.2e-34   3.1e-31       1      88 [.     606     692 ..     606     693 .. 0.98

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 1.2e-34
                 EEEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHHHH CS
       EFG_C   1 vllEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdklde 88 
                 v+lEP+++ve+e+peey g++++dlssrrG +++me++  g +ii+a++Plae++g++t Lrs+++G++++smef++Y+e+p +++de
  CTQ28956.1 606 VILEPVMHVEVETPEEYAGNIMGDLSSRRGMVQGMEER-FGSQIIRADVPLAEMFGYSTTLRSMSQGRATYSMEFHHYAEAPRNVADE 692
                 59************************************.********************************************99987 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.1   3.4e-21   8.7e-18       1      74 []     329     396 ..     329     396 .. 0.98
   2 ?   -2.0   0.0         2   5.1e+03      45      59 ..     614     628 ..     567     637 .. 0.68

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 3.4e-21
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G+++++rvysGtlkkGd v++    ++kk   +ri+++  ++++ + +v++ +aG+i+a +gl+d + +Gdtl+
   CTQ28956.1 329 GQLTFIRVYSGTLKKGDAVWN--PVKGKK---ERIGRIVLMQANDRHEVDELHAGDIAACVGLKD-VTTGDTLC 396
                  7899*****************..999999...*********************************.*******8 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2
                  ESEEETTSEEEEEEE CS
  GTP_EFTU_D2  45 edeavaganaGviva 59 
                  ++ + ++++aG+i +
   CTQ28956.1 614 VEVETPEEYAGNIMG 628
                  344488999999876 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.2e-09     3e-06      15      92 ..     418     495 ..     409     513 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.2e-09
                 EEESSGGGHHHHHHHHHHHHHCTSSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE-S CS
       RF3_C  15 vrlkdplkrkqlrkgleqLaeEGavqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwvese 92 
                 ++ k    + ++  +l+ La E     ++++e++ ++i++ +G+L +e++ +R+k+E+gve+++ + ++++   ++++
  CTQ28956.1 418 IEPKTKADQEKMGIALQRLAAEDPSFRLHTDEESGQTIISGMGELHLEIIVDRMKREFGVEANIGRPQVTYRETLRKK 495
                 55666677778888999******99999999999******************************99988877776554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.9e-05     0.048       7     114 .]      18     143 ..      12     143 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.9e-05
                 STTSSHHHHHHHHH......TSTEEESSSTTSSSSEEEEEEE......ETTEE................EEEEECGGCSSHHHHHHHHHHHHHHHHC.T CS
    MMR_HSR1   7 rpNvGKStLinalt......gekaivsdkpgtTrdinegrvk......lkgke................ielvDtpGliegaseekglgkaflalee.a 76 
                 +  +GK+t   +++       +  +v d + tT  + +++ +                           i+++DtpG ++       ++ ++++  +  
  CTQ28956.1  18 HIDAGKTTTTERILfytgmsHKLGEVHDGAATTDWMAQEQERgititsA---AvscfwpgmdrsfephrINIIDTPGHVD-------FTIEVERSMRvL 106
                 5578999999999755443324668888888887776664332222230...03333333334444444********655.......555555544536 PP

                 SEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  77 dlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                 d +++v d+  ++++p+ e++ +  ++ + p +  +nk
  CTQ28956.1 107 DGAVMVYDSV-GGVQPQSETVWRQANKYHVPRLAFVNK 143
                 9*******76.889999999988888777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 5156.24
//
Query:       CTQ28957.1  [L=103]
Description: Uncharacterized HTH-type transcriptional regulator YczG [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-12   45.4   0.1      1e-11   44.7   0.1    1.4  2  HTH_20    Helix-turn-helix domain
    5.1e-05   23.0   0.0     0.0001   22.1   0.0    1.5  1  HTH_5     Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
       0.14   12.5   1.0       0.71   10.2   0.1    1.9  2  DUF3459   Domain of unknown function (DUF3459)


Domain annotation for each model (and alignments):
>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.1   1.7e-15     1e-11       2      61 .]      15      73 ..      14      73 .. 0.95
   2 ?   -2.8   0.0       1.2     7e+03      45      52 ..      96     103 .]      84     103 .] 0.67

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 1.7e-15
                HHHHHHS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTEE CS
      HTH_20  2 qiaeALahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvregr 61
                ++++AL++P R++i r La++ +l++++l ++  ++k+t+ +H+rvL++ g + ++ +gr
  CTQ28957.1 15 NVLSALGNPLRLEIIRTLADGSELSCNALRQEE-VAKSTMTHHWRVLRDSGVIWQRPQGR 73
                689*****************************8.******************99988886 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                 HHHHHHCT CS
      HTH_20  45 LrvLeeag 52 
                 L+v+++ag
  CTQ28957.1  96 LKVMVQAG 103
                 47777776 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.7e-08    0.0001       1      45 [.      22      66 ..      22      67 .. 0.96

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.7e-08
                SHHHHHHHHHHTTSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  1 dptRlkILklLaegelcvcelaeelglsqstvShHLkkLreaGLV 45
                +p Rl+I++ La+g+  +c   ++ ++ +st  hH ++Lr++G++
  CTQ28957.1 22 NPLRLEIIRTLADGSELSCNALRQEEVAKSTMTHHWRVLRDSGVI 66
                699************99**************************87 PP

>> DUF3459  Domain of unknown function (DUF3459)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00012      0.71      13      78 ..       6      70 ..       3      75 .. 0.81
   2 ?    1.5   0.1     0.063   3.8e+02       4      18 ..      75      91 ..      73     101 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00012
                CCCTT--CGGEEEEEEECTCEEEEEEEETTEEEEEEEE-SSCGCCS-SS---SEEEEECT--S... CS
     DUF3459 13 PaLadarrgglevavlgdgallvrwrlgdgrllrllaNLgdepvtlppegaagkllfsseaaragg 78
                P+  + r +++  a   + +l + ++l+dg++l++ a L +e+v+ ++  +++++l  s+  ++  
  CTQ28957.1  6 PEREQIRLENVLSALGNPLRLEIIRTLADGSELSCNA-LRQEEVAKSTMTHHWRVLRDSGVIWQRP 70
                5556677777888888899999**********77766.8889999999*********999888765 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.063
                HHHHHHHHH..CCCTT- CS
     DUF3459  4 dLLaLRree..PaLada 18
                ++++LRre+   ++ ++
  CTQ28957.1 75 NMISLRREDldARFPGL 91
                6899****988666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 815.31
//
Query:       CTQ28958.1  [L=452]
Description: putative amino-acid/amine transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-33  116.5  38.3    1.7e-33  116.1  38.3    1.2  1  AA_permease_2    Amino acid permease
    1.5e-33  116.1  36.6    1.9e-33  115.8  36.6    1.1  1  AA_permease      Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1  38.3     2e-37   1.7e-33      34     393 ..      55     408 ..      19     445 .. 0.76

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 2e-37
  AA_permease_2  34 lwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaasyllnalgpdlqgntwltyliaiaililv 129
                      + ++++   l  +l y  l  + p+ g +y+y+++ +++ v+f+++w+++++y++ ++ i++++a+ +  al p++      + +++ia++++ 
     CTQ28958.1  55 YAFALIAI---LFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSSLLDYLF-APMINILLAKIYFEALVPSIP-----SWVFVIALVAFM 141
                    33334444...4478889999888*******************************99.8999********999999974.....558999****** PP

  AA_permease_2 130 alinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwpg......vllgllivlwsfdGfesaanvseevkk..k 217
                    +++n+r+ik +a++++++++l ++l+ +il  + + ++ g g+      t  +   +w+g      ++ g +i ++sf+Gf++++n see k   +
     CTQ28958.1 142 TAFNLRSIKSVANFNTVIVVLQVVLIAVILGMVIYGVFEGEGAG-----TLASSRPFWSGdahvipMITGATILCFSFTGFDGISNLSEETKDaeR 232
                    ***********************755555554444444444443.....323333366664333456999999*****************997668 PP

  AA_permease_2 218 dvpkaifigllivlvlyllvniaflgvvpddei.anlsnlgsvaalffeavggkvvaiivvilialsllgaintavigssrvlealardgvlP.rf 311
                     +p+aif+ +li ++++++ + +++   pd +  + ++ +    ++++  +g k++++ + i+ ++ +l ++++a +g++r+++ ++rdgv+P +f
     CTQ28958.1 233 VIPRAIFLTALIGGLIFIFATYFLQLYFPDISRfKDPDASQ--PEIMLYVAG-KAFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPkSF 325
                    9*****************************66536666643..799999999.99999999*********************************** PP

  AA_permease_2 312 fakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphl.kr...pgkilvaiigal 393
                    f  v+  + +p   iil+  ++ +l++ f l+     ++l + ++l ++ ++ l +i+ +++r kr++  k    + + ++    ++
     CTQ28958.1 326 FGYVHpTWRTPAMNIILVGAIA-LLAINFDLV---MATALINFGALVAFTFVNLSVISQFWIREKRNKTlKDhfqYLFLPMCGALTV 408
                    *****99*********999999.444444332...3466666666666666666666666777555443244654333333332222 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8  36.6   2.1e-37   1.9e-33       2     424 ..      23     413 ..      22     432 .. 0.80

  Alignments for each domain:
  == domain 1  score: 115.8 bits;  conditional E-value: 2.1e-37
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  v+++ l+ + + +lf   g+v +   +  +  ay++a + i++++ls g ++  +p++g++ytya+++++p +Gf++G++ l+ ++++ ++ +  a i
   CTQ28958.1  23 VVMMGLAYMQPMTLFDTFGIVSGMTDG-HVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSSLLDYLFAPMINILLAKI 119
                  789999999999999999998888877.8899****************************************************************** PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivg.iillaggkpnkgagfrflgdngsifknnlppgfakeeeg 196
                  +++ +  v+++p  wv+++ ++++++++nl ++k  + + +++ ++ ++ i+ +i++  i ++++g+++       l +     +  + +g       
   CTQ28958.1 120 YFEAL--VPSIP-SWVFVIALVAFMTAFNLRSIKSVANFNTVIVVLQVVLIA-VILGMvIYGVFEGEGAGT-----LAS-----SRPFWSG-----DA 198
                  *****..*****.*************************99987777666544.444442555555554444.....111.....2234444.....45 PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplina 294
                   +  +i ++ i+ f+ftG+  + ++++E+kd e+ iP+ai  + ++ +++++++++++ l +p+ +     d+ ++      ++ +   +++++   +
   CTQ28958.1 199 HVIPMITGATILCFSFTGFDGISNLSEETKDAERVIPRAIFLTALIGGLIFIFATYFLQLYFPDISRFKDPDASQP-----EIMLYVAGKAFQVGALI 291
                  68889**********************************************************8886666656655.....55556666777777778 PP

  AA_permease 295 viltaalssansslysasRvlyslakdglaP..kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsyl.. 388
                  ++ +++l s++++ +   R++y + +dg++P  +++ ++  ++ P++ i+l+ +i+lla+     n++      ++ a+  + +l+ +++++ls +  
   CTQ28958.1 292 FSTITVLASGMAAHAGVARLMYVMGRDGVFPksFFGYVHPTWRTPAMNIILVGAIALLAI-----NFD----LVMATALINFGALVAFTFVNLSVIsq 380
                  88899***************************88888889*****************999.....344....22444445555555555555555522 PP

  AA_permease 389 .rfRkalkyqgrsieelgfkaallplgvilvlaalii 424
                    +R +   +++ + +  f+  +lp+   l++ al+ 
   CTQ28958.1 381 fWIREK---RNKTL-KDHFQYLFLPMCGALTVGALWV 413
                  033333...22222.3346667777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       995  (0.0554967); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3384.02
//
Query:       CTQ28959.1  [L=296]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.8e-24   83.9   6.8    1.3e-22   80.2   6.8    2.1  1  LysR_substrate  LysR substrate binding domain
    1.1e-14   54.1   0.0      2e-14   53.2   0.0    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   6.8   1.4e-26   1.3e-22       2     190 ..      89     268 ..      88     285 .. 0.90

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 1.4e-26
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGG.S CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLar.g 93 
                     +g + +Lr+++ +t+   ll   +a+f ++ P  +l+ + ++s    + l +g++Dl + a+ +  + sg+++ pL+e +l+lv++p+hpLar +
      CTQ28959.1  89 QGWENSLRLAVDSTFPVALLSTPIAAFYQQQPLTRLHFTLNPSLLDWRPLTDGQADLLLGALGEppPLSGYDYLPLGELELLLVVAPQHPLARhR 183
                     788999************************************9999999********998877767***************************** PP

                     SSECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEE CS
  LysR_substrate  94 epvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyr 188
                     +p+s++ L++++ +   eg +l               + +l+v +++  lal + GlG+++lpr+ v+  l++g+lv+  ++++ ++++ +++++
      CTQ28959.1 184 APLSWRTLRRYRAVATGEGGALLSD------------QETLTVCDAAGQLALLRLGLGWGCLPRYQVQGLLDSGELVCMTVRGLSPRQRAWIAWN 266
                     ***************5555553333............446899999999**********************************9999*******8 PP

                     TT CS
  LysR_substrate 189 kg 190
                       
      CTQ28959.1 267 DA 268
                     65 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   2.3e-18     2e-14       3      60 .]       7      64 ..       5      64 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 2.3e-18
                HHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  3 qlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                 l +++a+ +egsf++A  +L  +++a+s  i rLE+ l+ +L++R+g+++r T+ G+
  CTQ28959.1  7 VLVILDALEKEGSFAAASAKLFKTPSALSYTIHRLESDLNIQLLDRSGHRARFTPSGQ 64
                6899****************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 2113.71
//
Query:       CTQ28960.1  [L=274]
Description: putative epimerase, with NAD(P)-binding Rossmann-fold domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-08   33.4   0.0    5.2e-07   29.4   0.0    2.1  1  Epimerase       NAD dependent epimerase/dehydratase family
    0.00045   20.4   0.0    0.00062   20.0   0.0    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    0.00063   19.4   0.0     0.0026   17.4   0.0    1.8  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
    0.00082   19.3   0.0     0.0011   19.0   0.0    1.2  1  NAD_binding_10  NAD(P)H-binding
  ------ inclusion threshold ------
       0.07   13.0   0.0       0.12   12.3   0.0    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
        0.2   10.6   0.0       0.26   10.3   0.0    1.2  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.7e-10   5.2e-07       8     240 ..      10     212 ..       4     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.7e-10
                 SHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HH.HHHHHHHHHT-SEEEE--S.---HHHHHHSHHHHHHHHTHHHHHHHHHHHH CS
   Epimerase   8 GfiGsalvkallekgyevigldrlssasntarledlelveldltdrs.alerlfkeeqpdavihlAa.vggvaassedpadfieknlqgtlnlleaark 104
                 G +G  l+  l ++g++v+g +  +++ + ar     ++ +d      + + ++++e+ da +++ a v + +a+ + + + ++  lq ++++++ a +
  CTQ28960.1  10 GWLGMPLALSLTARGWQVTGSKTTQDGVEAAR-----MCGIDSYPLRlEPQLVCDTEDLDALMNVDAlVITLPARRTGAGEGFY--LQAVQEIVDTALA 101
                 66677777777777777777777766666554.....333333332223445778889*******7779999999999999999..9************ PP

                 HTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHHHHHHHHTTSSSEEEE CS
   Epimerase 105 agvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipalirkilegkqevtll 203
                 +++ r++f sS++vYG+++ +  +e++      p+ p  a+ +   +l   +++  g+++ ilrl  l+Gp    +++ r+++        gk      
  CTQ28960.1 102 YHIPRIVFTSSTSVYGNVNGT-VKENS------PRLPQTASGQVLKELEDWLHNLPGTSVDILRLAGLVGPS---RHPGRFFA--------GK----SA 178
                 ********************5.55555......88888999999999999999999****************...77888887........66....56 PP

                 TTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEE CS
   Epimerase 204 gdgtalRdflyveDvaeaillvlehvdagdkgeiyni 240
                  dg+++  +++ +Dv+ ai l+l+++   + g+iyn+
  CTQ28960.1 179 PDGQHVVNLVHLQDVVAAIELLLQAP---KGGHIYNL 212
                 7999*********************4...44789997 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.1e-07   0.00062       1      42 [.       3      44 ..       3     102 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.1e-07
                   EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT CS
  NAD_binding_2  1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg 42
                   k++++GlG +G+++al l+++g++v++   t++ ve++   g
     CTQ28960.1  3 KVAIVGLGWLGMPLALSLTARGWQVTGSKTTQDGVEAARMCG 44
                   689*****************************9999876665 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   8.6e-07    0.0026       2     128 ..       3     119 ..       2     139 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.6e-07
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B-TTTTCB- CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDideekvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaVgTPskkkgkaaD 96 
                     k++++GlG++G++ a+ l ++g +v+g    +  v++ +   i  y   Le  +   +         d+  a+ + d+++i+ +     +g+   
      CTQ28960.1   3 KVAIVGLGWLGMPLALSLTARGWQVTGSKTTQDGVEAARMCGIDSYPLRLEPQLVCDT--------EDL-DALMNVDALVITLPARRTGAGEGFY 88 
                     89*************************9999999988777666666666554433332........222.2345555566665555555555544 PP

                     THHHHHHHHHHHHHHHCEEEEEE-S---TTHH CS
  UDPG_MGDP_dh_N  97 lkyvesaarsiaealkkgkvvvvkSTvpvgta 128
                     l++v++++++     +  ++v + ST + g +
      CTQ28960.1  89 LQAVQEIVDTALA-YHIPRIVFTSSTSVYGNV 119
                     4444444443221.222556666666666555 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.5e-07    0.0011      50     150 ..      59     166 ..      10     203 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.5e-07
                     -CCHHHHHHTT-SEEEES---TCC......HHHHHHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHH.HHHHHHHHHHHH.SSS CS
  NAD_binding_10  50 dvedlaealkgadaVvsalggggk......deegaknivdaakeagvkRfvlvsaigvgdevpgefgewnkellkayl.aakraaeellra.sgl 136
                     d+edl +al ++da v++l ++++        ++++ ivd a + ++ R+v+ s+  v+ +v+g+++e   +l +++  +  ++ e++l +  g 
      CTQ28960.1  59 DTEDL-DALMNVDALVITLPARRTgagegfYLQAVQEIVDTALAYHIPRIVFTSSTSVYGNVNGTVKENSPRLPQTASgQVLKELEDWLHNlPGT 152
                     55554.57889********444444333466677**************************99999888766655444434455666666665577 PP

                     EEEEEEE-CEE-ST CS
  NAD_binding_10 137 dwTivrpggLtdep 150
                        i+r +gL    
      CTQ28960.1 153 SVDILRLAGLVGPS 166
                     77777777776655 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     4e-05      0.12       1      39 [.       3      41 ..       3      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4e-05
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekal 39
                kva++G G +G  +a  + ++g +V+   ++++ +e+a+
  CTQ28960.1  3 KVAIVGLGWLGMPLALSLTARGWQVTGSKTTQDGVEAAR 41
                79****************************999999886 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   8.6e-05      0.26      65     122 ..      61     118 ..       6     136 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.6e-05
   3Beta_HSD  65 egvdvvihlaslvdvagkltedeimkvnvkGTrnvleacvkagvrvlvYtSsaevvgp 122
                 e+ d+++ + +lv      +++      ++  ++++++++   ++++v+tSs +v g+
  CTQ28960.1  61 EDLDALMNVDALVITLPARRTGAGEGFYLQAVQEIVDTALAYHIPRIVFTSSTSVYGN 118
                 555555555555555555555555556678889**********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2080.81
//
Query:       CTQ28961.1  [L=299]
Description: ATP phosphoribosyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-48  163.8   0.0    4.1e-48  163.4   0.0    1.2  1  HisG      ATP phosphoribosyltransferase
      8e-25   86.8   0.1    1.7e-24   85.7   0.1    1.6  1  HisG_C    HisG, C-terminal domain
  ------ inclusion threshold ------
      0.037   14.4   0.0        2.8    8.4   0.0    2.4  2  Toprim_3  Toprim domain
       0.12   12.3   0.0       0.54   10.2   0.0    1.9  1  NMT1      NMT1/THI5 like


Domain annotation for each model (and alignments):
>> HisG  ATP phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.0   9.1e-52   4.1e-48       1     160 []      54     219 ..      54     219 .. 0.93

  Alignments for each domain:
  == domain 1  score: 163.4 bits;  conditional E-value: 9.1e-52
                 -GGGHHHHHHTTSSSEEEEEHHHHHHC.......T...TEEEEEEESESEEEEEEEEETTSS--SGCGG.TT-.EEEEES-HHHHHHHHHHTT-EEEEE CS
        HisG   1 raadiptyVeegavdlGitGkDvveEs.......keeeeveelldLgfgkcklvvavpeesevkslkdlvedkgkriaTsypnlakkyfeekglkveii 92 
                 r++dip +V++g+vdlGi+G++v+eE+       +e+ ++ +l +L+fg c+l++a p ++ ++  + l    gkriaTsyp+l+k+y+++kg++++ +
  CTQ28961.1  54 RDDDIPGLVMDGVVDLGIIGENVLEEEllsrraqGEDPRYFTLRRLDFGGCRLSLATPVDEAWNGPAAL---DGKRIATSYPHLLKRYLDQKGISFKSC 149
                 789***********************6666777788999********************9999988876...678************************ PP

                 E-SS-CTHHHHTTS-SEEEEEESSSHHHHHTTEEEEEEEEEEEEEEEEEHHHHHS..HHHHHHHHHHHHH CS
        HisG  93 klsGsvEaapalglaDaIvDlvetGeTLrangLkaietilessavLiankkslkk..kekieellerlrg 160
                  l+GsvE+ap+ glaDaI+Dlv+tG+TL+angL+++e i++s+a+Li++  ++++  +++i++ll+r++g
  CTQ28961.1 150 LLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMADakQQLIDRLLTRIQG 219
                 ***********************************************999888844477*********96 PP

>> HisG_C  HisG, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.1   3.8e-28   1.7e-24       1      73 []     223     296 ..     223     296 .. 0.99

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 3.8e-28
                 TTTEEEEEEEEEGGGHHHHHHH---SSS-EEEE-..SS-EEEEEEEEECCCHHHHHHHHHCTT-EEEEEEE-S- CS
      HisG_C   1 ArkyvllmynvpkesleevlkilPGlrsPTvspla.degwvaVsavveekevaevideLkaaGAsdIlvlpiek 73 
                 Ar+++++m+++p e+leev+++lPG + PT+ pla d++ va ++v +e+ ++e++++Lka+GAs+Ilvlpiek
  CTQ28961.1 223 ARESKYIMMHAPTERLEEVVALLPGAERPTILPLAgDKQRVAMHMVSSETLFWETMEKLKALGASSILVLPIEK 296
                 89*********************************999**********************************97 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00062       2.8      25      69 ..     175     219 ..     169     228 .. 0.91
   2 ?    3.7   0.0     0.018        79      48      81 ..     258     295 ..     220     298 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00062
    Toprim_3  25 AllsaanlkaiawpergkrvviaaDnDaandGreaaeklaerlea 69 
                 A l+a++l+++++  r+k   i +D++ a++ ++ +++l  r+++
  CTQ28961.1 175 ATLEANGLREVEVIYRSKACLIQRDGEMADAKQQLIDRLLTRIQG 219
                 8899*************************99********999985 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.018
    Toprim_3  48 aDnDaand....Greaaeklaerleaagieavllepae 81 
                  D+   +     ++  +++++e+l+a g + +l+ p e
  CTQ28961.1 258 GDKQRVAMhmvsSETLFWETMEKLKALGASSILVLPIE 295
                 44333333677788999**************9999954 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00012      0.54      77     149 ..     108     172 ..      43     233 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00012
                 EEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEET CS
        NMT1  77 livlkdsgikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaaiggye 149
                 l++  d+  + p+ L+Gkri++++     +llk+ l ++g++++++ l  +g  ++  a  +g +Da+   + 
  CTQ28961.1 108 LATPVDEAWNGPAALDGKRIATSY----PHLLKRYLDQKGISFKSCLL--NGSVEV--APRAGLADAICDLVS 172
                 566678888999************....8***************9998..334444..667777777764444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2247.38
//
Query:       CTQ28962.1  [L=434]
Description: bifunctional histidinal dehydrogenase and histidinol dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-162  541.8   4.1   1.2e-162  541.6   4.1    1.0  1  Histidinol_dh  Histidinol dehydrogenase


Domain annotation for each model (and alignments):
>> Histidinol_dh  Histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  541.6   4.1  6.7e-167  1.2e-162       7     409 .]      28     427 ..      21     427 .. 0.97

  Alignments for each domain:
  == domain 1  score: 541.6 bits;  conditional E-value: 6.7e-167
                    --HHHHHHHHHHHHHHHHHCHHHHHHHHHHCCSSSSGGCCEE-HHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHCC----EEEEEECTTEEEEEEE CS
  Histidinol_dh   7 dseeveetvkeiledvreeGdealleytekFDkvkkleslrvseeeieealekldeelkealeeaaenirkfheaqkeseeevketepgvvlgqkv 102
                     s+++++tv+eil++v+++Gd+al+ey++kFDk++ +++l+vse+ei++a e+l++elk+a+ +a++ni++fh+aq+ +   v et pgv+++q +
     CTQ28962.1  28 ASDSISKTVTEILNNVKANGDAALREYSAKFDKTT-VAALQVSEAEIAAAGERLSDELKQAMAVAVKNIETFHNAQQLQAVDV-ETLPGVRCQQVT 121
                    456899**************************664.689**************************************876666.9*********** PP

                    EE-SEEEEE---STT--CHHHHHHHHHHHHHT-SEEEEEE-SSGG.--HHHHHHHHHCT-SEEEE--HHHHHHHHHH--SSS---SEEE---SHHH CS
  Histidinol_dh 103 rpiervGlYvPgGkaaypStvlmnavpAkvAgvkeivvvtPpqdgkvnpavlaaaklagvdeiykvGGaqAiaalAyGtesipkvdkivGPGniyV 198
                    rpi +vGlY+PgG+a+++Stvlm+a pA++Ag++++v+++Pp    +++++l+aa+l+gv++i++vGGaqAiaalA Gtes+pkvdki+GPGn+yV
     CTQ28962.1 122 RPIASVGLYIPGGSAPLFSTVLMLATPARIAGCQQVVLCSPP---PIADEILYAAQLCGVKTIFNVGGAQAIAALALGTESVPKVDKIFGPGNAYV 214
                    *****************************************9...59************************************************* PP

                    HHHHHHHCTT...BEES----S-EEEEEE-TTS-HHHHHHHHHHHHTT-TT-EEEEEES-HHHHHHHHHHHHHHHCC-TTHHHHHHHHCCH-EEEE CS
  Histidinol_dh 199 aaAKrlvsge...vgiDmiaGPsEvlviaDetadpefvAaDLlsqaEHdedaqavlvttseelaeaveeevekqleelprkeiaekslekqsaiil 291
                    ++AKr+vs++    +iDm+aGPsEvlviaD+ a+p+fvA+DLlsqaEH++d+q++l+t+++++ ++v+e+ve+ql++lpr+e+a+ +l+  s+ii+
     CTQ28962.1 215 TEAKRQVSQRldgAAIDMPAGPSEVLVIADSGANPDFVASDLLSQAEHGPDSQVILLTPDADMGSRVAEAVERQLAALPRAETARVALSA-SRIIV 309
                    *******77766799***************************************************************************.***** PP

                    -SSHHHHHHHHHHH--SEEEEESTTHHHHGGG--S-SEEEESTT--HHHHHHTSSS------TTGGGT---S-GGGGEEEEEEEEE-HHHHHHHHH CS
  Histidinol_dh 292 vedleeaielaneyApEHlelqvedpeellekiknaGaiflGeyspeslgDYaaGtnhvLPTsgtArfssglsvedFlkkisvqelskealkelae 387
                    ++dl+++++++n y+pEHl++q+++++el+++i++aG++flG++spes+gDYa+GtnhvLPT+g++ + s+l+++dF+k+++vqels++++++la+
     CTQ28962.1 310 ARDLAQCVAISNLYGPEHLIIQTRQARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSRDGFAALAS 405
                    ************************************************************************************************ PP

                    HHHHHHHHTT-HHHHHHHHHHH CS
  Histidinol_dh 388 avetlAeaEgLeaHaeavkvRl 409
                    ++e lA+aE+L+aH++av++R+
     CTQ28962.1 406 TIEILAAAERLDAHKNAVTLRV 427
                    *******************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3170.06
//
Query:       CTQ28963.1  [L=353]
Description: histidinol-phosphate aminotransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-64  218.6   0.0    1.6e-64  218.3   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.025   14.7   0.0      0.043   13.9   0.0    1.4  1  MLTR_LBD         MmyB-like transcription regulator ligand bin
      0.035   12.6   0.0       0.05   12.1   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
      0.071   12.0   0.0        0.1   11.5   0.0    1.2  1  Alliinase_C      Allinase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.3   0.0   3.7e-68   1.6e-64      32     363 .]      44     348 ..      28     348 .. 0.94

  Alignments for each domain:
  == domain 1  score: 218.3 bits;  conditional E-value: 3.7e-68
                    HHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTT CS
  Aminotran_1_2  32 laggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseed 127
                    l  +tln+y+ ++  +++ e  a+++       +k+e +v+v+ Ga+++ie+li++++ + +d++l + pty++y+  ++  g+e++++p+   +d
     CTQ28963.1  44 LTEQTLNRYPEPQ-PKAVIESYARYAE------VKPE-QVLVSRGADEGIELLIRAFCEPGEDAVLYCPPTYGMYSVSAETIGVECRTVPTL--AD 129
                    5679*********.*************......9***.*******************9888999**************************77..** PP

                    TEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH.HGGSTTSTTEEEEEESSST CS
  Aminotran_1_2 128 fhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavat.ranveeepnllivgslsKa 222
                    ++ldl ++e+ l+        +kv++v+sp+NPtG++++++  ++ll++++  +++++ DeaY +f+++     at   +++++p+l+++++lsKa
     CTQ28963.1 130 WQLDLPGIEARLD-------GVKVVFVCSPNNPTGQIIDPQSMRDLLEMTRG-KAIVVADEAYIEFCLQ-----ATlAGWLSDYPHLVVLRTLSKA 212
                    *************.......679**************************997.****************.....3339****************** PP

                    TSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..TEEEECCSCSSEEEEEETHHC CS
  Aminotran_1_2 223 fGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael..glkvlasqsgmflltdlsaet 316
                    f+laG+R+G++l+na+v++ l k+ +p+  s++++ ++a+als +      + ++++++ ++r++l+++L+ +    +v++s+++++l + +  + 
     CTQ28963.1 213 FALAGLRCGFTLANAEVINVLLKVIAPYPLSTPVADIAAQALSPEGIA--AMRQRVAQILDERRYLVEQLRGIacVEQVFDSETNYVLARITASS- 305
                    ********************************************9965..********************9999999**********99888888. PP

                    HHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 317 akelskkLleevgvyvtpgtsftvpgrlRitvAglteeeleelveal 363
                      +++k+L+++  ++  +++++ ++g+lRit+  +t++e +++++al
     CTQ28963.1 306 --AVFKSLWDQGIILRDQNKQPSLSGCLRITI--GTRAESQRVIDAL 348
                    ..*********99999999*************..*******999986 PP

>> MLTR_LBD  MmyB-like transcription regulator ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.6e-06     0.043      48     112 ..     247     315 ..     204     328 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.6e-06
    MLTR_LBD  48 rNllrlvfldp...glrpliedweevaralvarLraea.arrpddpalaalvaeLsaaspefarlwarh 112
                 + ++ + + ++   ++r+++++  + +r+lv++Lr  a  ++  d++ + ++a+++a+s+ f+ lw+++
  CTQ28963.1 247 ADIAAQALSPEgiaAMRQRVAQILDERRYLVEQLRGIAcVEQVFDSETNYVLARITASSAVFKSLWDQG 315
                 55666666666222567777888999*********865488999**********************987 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.1e-05      0.05      79     178 ..      84     186 ..      43     194 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.1e-05
                      HHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST.....TSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT CS
  Cys_Met_Meta_PP  79 AiaaailallkaGdeivvsddlYggtqrllkkvlkklgievkfvdt.....sdleelekaikentklvylEtptnpllkvvDiekiaklakkag 167
                       i++ i+a+++ G++ v+      +t+ + +  ++ +g+e++ v t      dl  +e+ + + +k+v++ +p np+ +++D +++ +l     
       CTQ28963.1  84 GIELLIRAFCEPGEDAVLYC---PPTYGMYSVSAETIGVECRTVPTladwqLDLPGIEARL-DGVKVVFVCSPNNPTGQIIDPQSMRDLLEMTR 173
                      56677888888888777532...46788888888889999999888433333444455544.579*****************999999887765 PP

                      ..-EEEEEGTTTH CS
  Cys_Met_Meta_PP 168 ..vlvvvDntfas 178
                        ++vv D +++ 
       CTQ28963.1 174 gkAIVVADEAYIE 186
                      5688888987765 PP

>> Alliinase_C  Allinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.3e-05       0.1     140     211 ..     146     228 ..     100     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.3e-05
                  EEEEESS-TTT---.....-----..-TT-EEEEEE-TT..-STTTS--..-S-B--SEEEEEHHHHHS-GGG-EEEEEES-H CS
  Alliinase_C 140 ielvtsPnnPdgll.....reavv..kgseakviyDlay..YWPhytpi..tskadedimLftlskltGhaGsrlGWalvkdk 211
                  + +v sPnnP g++      + ++  ++ +a+v+ D ay  +  + t     s   + ++L tlsk    aG r G++l   +
   CTQ28963.1 146 VVFVCSPNNPTGQIidpqsMRDLLemTRGKAIVVADEAYieFCLQATLAgwLSDYPHLVVLRTLSKAFALAGLRCGFTLANAE 228
                  5689********98332222345544566777889*9994333444443114566699*******************997654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2711.95
//
Query:       CTQ28964.1  [L=355]
Description: fused histidinol-phosphatase; imidazoleglycerol-phosphate dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-65  217.3   0.4    1.4e-64  216.8   0.4    1.2  1  IGPD            Imidazoleglycerol-phosphate dehydratase
    9.6e-06   25.8   0.0      0.004   17.3   0.0    2.4  2  HAD_2           Haloacid dehalogenase-like hydrolase
    1.2e-05   25.1   0.0    3.4e-05   23.6   0.0    1.8  2  PNK3P           Polynucleotide kinase 3 phosphatase
    1.4e-05   25.0   0.0    3.2e-05   23.9   0.0    1.6  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
      0.097   12.8   0.0        0.3   11.2   0.0    1.9  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase
       0.15   12.3   0.0       0.99    9.6   0.0    2.3  2  Hydrolase       haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> IGPD  Imidazoleglycerol-phosphate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.8   0.4   4.6e-68   1.4e-64       1     144 []     196     337 ..     196     337 .. 0.99

  Alignments for each domain:
  == domain 1  score: 216.8 bits;  conditional E-value: 4.6e-68
                 ....HHHHHHHHHHHHHT--EEEEEEESSH...HHHHHHHHHHHHHHHHHHS..-SSB--EEEEEEEETTEEEEEEEE--SS-EEE--..-SB--TT.- CS
        IGPD   1 TgigfldhmLdqlakhggfdlkvkvkgdlevddHhtvedvgialGqalkealgdkrgikRfgsallpmDealaevaldlsgrpylvleaelkrekigel 99 
                 Tg+gf+dhmLdq+a+hggf+++v+v gdl +ddHhtved+g+alG+alk algdkrgi+Rfg++ lpmDe+la++ald+sgrp+l+++a+++ +++g+l
  CTQ28964.1 196 TGVGFFDHMLDQIATHGGFRMEVNVGGDLYIDDHHTVEDTGLALGEALKLALGDKRGINRFGFV-LPMDECLARCALDISGRPHLEYKADFTYQRVGDL 293
                 9**************************************************************9.********************************** PP

                 -HHHHHHHHHHHHHHHT-EEEEEEEE--BHHHHHHHHHHHHHHHH CS
        IGPD 100 dtelveeffeslaeaagitlhvkvlrgenahhivealfKafaraL 144
                 +te+ve+ff+sl+ ++++tlh+k++ g+n+hh ve+lfKaf+r+L
  CTQ28964.1 294 STEMVEHFFRSLSYTMAVTLHLKTK-GKNDHHRVESLFKAFGRTL 337
                 ***********************98.*****************87 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0036        11      77     105 ..      29      57 ..       6      64 .. 0.86
   2 !   17.3   0.0   1.3e-06     0.004     129     174 ..      99     144 ..      87     148 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0036
       HAD_2  77 evkpydgvkelLeeLkeagyklgivTsks 105
                 ++ + ++v+ +L +L+++gykl  +T+++
  CTQ28964.1  29 KLAFEPQVIPALLKLQQEGYKLVMITNQD 57 
                 6777899999****************986 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.3e-06
       HAD_2 129 edvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagik 174
                 +++  +KP++++++ +le+  l+k++  ++GD  tD+e a ++gi+
  CTQ28964.1  99 DNCACRKPKTQLVLPWLEEGVLDKSHSYVIGDRATDLELADNMGIT 144
                 566678**************************************96 PP

>> PNK3P  Polynucleotide kinase 3 phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.1e-08   3.4e-05       5     128 ..       8     132 ..       4     155 .. 0.73
   2 ?   -2.6   0.0       1.3   3.8e+03      71     112 ..     169     210 ..     156     228 .. 0.69

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.1e-08
       PNK3P   5 FDlDstliktksgkefakdaddwkllsesvlekLkklkeegykivifsNqggvvek.ktkkslekfkekieallkeldvp.llvyaatkk..d..kyRK 97 
                  D D+tli +   + f+ d+ d   ++++v+  L kl++egyk+v+++Nq g+ +    +++++   + + +++++ +v+   v++ ++   d  + RK
  CTQ28964.1   8 IDRDGTLISEPP-EDFQVDRFDKLAFEPQVIPALLKLQQEGYKLVMITNQDGLGTDsLPQEAFDGPHNLMMQIFASQGVNfEEVLICPHFpgDncACRK 105
                 5889***99887.556777888889999*************************9964445555556666666666666664123333331222248999 PP

       PNK3P  98 PetGmweelkkdleekleidkeksfyvGDaa 128
                 P+t ++    ++      +dk++s+ +GD a
  CTQ28964.1 106 PKTQLVLPWLEEGV----LDKSHSYVIGDRA 132
                 99998876665443....4677777777766 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
       PNK3P  71 ekieallkeldvpllvyaatkkdkyRKPetGmweelkkdlee 112
                  ++e+++ke +v++ v++  +        +G+++++ +++ +
  CTQ28964.1 169 AHVERITKETQVDVKVWLDREGGSKIHTGVGFFDHMLDQIAT 210
                 567788888888888887777666666666777777666655 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.1e-08   3.2e-05       2      45 ..     103     145 ..     102     150 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.1e-08
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EE CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwks 45 
                     ++KP   ++   le+  +d++++++iGDr atD++ A n+G+++
      CTQ28964.1 103 CRKPKTQLVLPWLEEGVLDKSHSYVIGDR-ATDLELADNMGITG 145
                     89***************************.***********986 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.9e-05       0.3       2      41 ..       7      58 ..       6     144 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.9e-05
                 EEESTTTSE............ETTEE-TTHHHHHHHHHHTT-EEEEEE---S CS
  Hydrolase_6  2 lfDidGvLw............rgdkaipgaaealnalraagkpvvllTNnss 41
                 ++D dG+L+            ++    p++  al  l+++g+++v++TN+ +
   CTQ28964.1  7 FIDRDGTLIseppedfqvdrfDKLAFEPQVIPALLKLQQEGYKLVMITNQDG 58
                 6899999998888888888444444579*********************944 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.54   1.6e+03       3      14 ..       5      16 ..       4      27 .. 0.81
   2 ?    9.6   0.0   0.00033      0.99     120     208 ..      33     140 ..      20     142 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.54
                EEEEESBTTTBC CS
                xxxxxxxxxxxx RF
   Hydrolase  3 tvvfDkdGTLtt 14
                 +++D dGTL+ 
  CTQ28964.1  5 YLFIDRDGTLIS 16
                6899******94 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00033
                 HTTHHHHHHHHHHTTEEEEEEESSEH................HHHHHHHHH.TTGGGE.SEEEEHHCES....STTTSHHHHHHHHHHHTSTGGGEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxx.xxxxxx.xxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 120 kpeaaeavasLkaagievvlltgdnp................etaeraanq.lGddyf.daviasdiet....vakpspegkvaaireLqgkpeevamV 196
                  p +  a+ +L++ g+++v++t+++                  + +  a+q ++   f ++ i+    +    + kp+ + ++  ++e   ++++  ++
  CTQ28964.1  33 EPQVIPALLKLQQEGYKLVMITNQDGlgtdslpqeafdgphnLMMQIFASQgVN---FeEVLICPHFPGdncaCRKPKTQLVLPWLEEGVLDKSHSYVI 128
                 577888999*************88887777677777766654444555555555...54666666666678789999***********999******** PP

                 ESSHHHHHHHHH CS
                 xxxxxxxxxxxx RF
   Hydrolase 197 GDgvnDaaalaa 208
                 GD+++D++ + +
  CTQ28964.1 129 GDRATDLELADN 140
                 ******987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2640.64
//
Query:       CTQ28965.1  [L=196]
Description: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-18   66.7   0.0    2.5e-18   66.5   0.0    1.1  1  GATase         Glutamine amidotransferase class-I
    3.1e-07   30.4   0.0    0.00033   20.6   0.0    2.1  2  SNO            SNO glutamine amidotransferase family
    3.7e-07   30.1   0.1     0.0033   17.2   0.0    2.1  2  Peptidase_C26  Peptidase C26
    1.9e-05   24.4   0.0    2.7e-05   23.9   0.0    1.2  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   5.6e-22   2.5e-18      42     187 ..      38     194 ..       4     196 .] 0.73

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 5.6e-22
                 STSEEEEEEESSCTT.......TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTT............EEE.....EEECEEEEEEEEEEEETTTCGGT CS
      GATase  42 npdgilvsgGpgspg.......vegkieaikearenkiPiLGICLGmQllaiefgr............kvv.....kekekehhggtmrlgddetally 116
                  +d++++ +G+g+ +         + i++ik +     P+LGICLGmQll++ + +            + v     +    +h+g++    + + +l++
  CTQ28965.1  38 RADKLFL-PGVGTAQaamdqlrDRELIDLIKAC---TQPVLGICLGMQLLGKRSEEnngvdllgiieeE-VpkmtdHGLPLPHMGWNRVYAKAGDRLFR 131
                 5566555.6788888556544444455555555...55******************7767666655552.055555666689**********999**** PP

                 TTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHH CS
      GATase 117 glknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnfl 187
                 g ++  + ++ H+y++      p   + +a+++ +e + ++++k+n f+gvQFHPE + + + ++ll+nfl
  CTQ28965.1 132 GIEEGAYFYFVHSYAMPV---NP--YT-IAQCNYGEAFTAAVQKDN-FFGVQFHPERSGSAG-AQLLKNFL 194
                 ***************886...33..44.577879999999999999.*********877766.99999985 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   7.3e-08   0.00033      13     100 ..      18     103 ..      10     107 .. 0.79
   2 !    8.0   0.0   0.00051       2.3     152     183 ..     160     194 ..     144     196 .] 0.71

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 7.3e-08
                 HHHHHTTSEEEEE-SGGGGCC-SEEEE-SS-..HHHHHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHHHCCEETTB.SS-SS--CCEEE CS
         SNO  13 eaikkclaenktvkrkedlaevdaliiPGGe..stamskliertglyedllefvknsekvvlGtCaGlillskelene.lvktlellkvkv 100
                  ai + ++e  + +++e + + d l +PG     +am +l +r     +l + +k   ++vlG C G+ ll k+ e++  v  l++++ +v
  CTQ28965.1  18 SAIGRHGYEPVVSRDPEVVLRADKLFLPGVGtaQAAMDQLRDR-----ELIDLIKACTQPVLGICLGMQLLGKRSEENnGVDLLGIIEEEV 103
                 678889999999****************853013455555554.....68999999****************9987664788888877655 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00051
                 TEEEEEE.ET.TEEEESS-GGGSTT.HCHHHHHHH CS
         SNO 152 geivvak.qk.kilatsfhPelaed.dirvhdyfv 183
                 ge  +a+ qk +++++ fhPe + + + ++ + f+
  CTQ28965.1 160 GEAFTAAvQKdNFFGVQFHPERSGSaGAQLLKNFL 194
                 65556666888**********98652556666665 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   7.4e-07    0.0033      83     118 ..      51      83 ..      41     111 .. 0.88
   2 !   11.2   0.0     5e-05      0.23     190     216 .]     154     180 ..     138     180 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7.4e-07
  Peptidase_C26  83 eeeadpeRdalelaLiraalergvPilgiCrGlqll 118
                    + ++d+ Rd+  + Li+a++    P+lgiC+G+qll
     CTQ28965.1  51 QAAMDQLRDRELIDLIKACT---QPVLGICLGMQLL 83 
                    66788999998888888876...5***********9 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 5e-05
  Peptidase_C26 190 vaeDgviEaieseeakafvlgvQwHPE 216
                    +a+ +  Ea+++  +k  ++gvQ+HPE
     CTQ28965.1 154 IAQCNYGEAFTAAVQKDNFFGVQFHPE 180
                    55566679999999999*********9 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   5.9e-09   2.7e-05      40     106 ..      38      94 ..      20     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 5.9e-09
    GATase_3  40 dadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpegvegeageve 106
                  ad ++lpG  +  +++  lr+++l + ik+  +   pvlgiC G+q+LG++ e+ +gv       +
  CTQ28965.1  38 RADKLFLPGVGTAQAAMDQLRDRELIDLIKACTQ---PVLGICLGMQLLGKRSEENNGV-------D 94 
                 4899*****9999999999999999999999765...***************9998887.......3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1492.47
//
Query:       CTQ28966.1  [L=245]
Description: N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-74  249.7   0.1    2.6e-74  249.5   0.1    1.0  1  His_biosynth  Histidine biosynthesis protein
    1.9e-05   24.2   0.1      7e-05   22.4   0.1    1.8  2  PEP_mutase    Phosphoenolpyruvate phosphomutase
    6.3e-05   22.5   3.9     0.0087   15.5   1.1    2.1  2  NMO           Nitronate monooxygenase
    0.00015   20.8   1.3    0.00027   19.9   0.2    1.8  2  Trp_syntA     Tryptophan synthase alpha chain
    0.00022   20.6   0.7      0.038   13.3   0.2    2.1  2  TMP-TENI      Thiamine monophosphate synthase
    0.00026   20.2   0.1       0.58    9.2   0.0    2.1  2  Dus           Dihydrouridine synthase (Dus)
    0.00037   19.7   0.0       0.16   11.1   0.0    2.2  2  IGPS          Indole-3-glycerol phosphate synthase
      0.003   16.8   0.3     0.0089   15.2   0.0    1.8  2  NanE          Putative N-acetylmannosamine-6-phosphate epimer
     0.0061   15.9   1.2     0.0091   15.3   0.3    1.6  2  ThiG          Thiazole biosynthesis protein ThiG
  ------ inclusion threshold ------
      0.031   13.3   0.8       0.14   11.1   0.1    1.9  2  IMPDH         IMP dehydrogenase / GMP reductase domain
       0.07   12.1   5.7        1.1    8.2   1.5    2.2  2  FMN_dh        FMN-dependent dehydrogenase
       0.11   11.9   0.1       0.22   10.9   0.1    1.5  2  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.5   0.1   1.7e-77   2.6e-74       1     228 [.       1     233 [.       1     234 [. 0.98

  Alignments for each domain:
  == domain 1  score: 249.5 bits;  conditional E-value: 1.7e-77
                   EEEEEEEEETTEEEEECTTCSTCEEEETTSHHHHHHHHHHHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-S CS
  His_biosynth   1 riipalDlkdGkvVrlvkGdrfqelryagdpvelakryeeegadelhvvDldaakegreanldlveeiaeevfipvqvGGGIrsledveelleagad 97 
                   +iipalDl dG vVrl++Gd+ q+ +y  dp+  +++y+++ga+ lh+vDl++ak+  ++++ l++ ++  v++pvqvGGG+r+  dv++lleag+ 
    CTQ28966.1   1 MIIPALDLIDGTVVRLHQGDYGQQRDYGSDPLPRLQAYAAQGAEVLHLVDLTGAKDPAKRQIPLLKSLVAGVDVPVQVGGGVRTEADVAALLEAGVA 97 
                   69*********************************************************************************************** PP

                   EEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEE...C.EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---HHHHHHHHHHH CS
  His_biosynth  98 kviigtaavknpelikelaekfgsqkivvaiDarr...g.ykvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdleltkelaeav 190
                   +v++g+ avk+pe +k ++++fg +++v+a+D+r    g  +va++gw+e++g++++el++ +  +g++++l+tdi+rdGtl+G +++l++e+++++
    CTQ28966.1  98 RVVVGSTAVKSPEEVKGWFKRFGPERLVLALDVRIdadGnKQVAVSGWQENSGVTLEELVESYLPVGLQHVLCTDISRDGTLAGSNVSLYEEVCARY 194
                   **********************************9766268******************************************************** PP

                   .SSEEEEESS--SHHHHHHHHHTTCSEEEESHHHHTTSS CS
  His_biosynth 191 .kipviasGGvgsledlkelksegvdavivgsalyegel 228
                    ++ ++ sGG+g+l+d+++l+ +gv++vivg+al+eg++
    CTQ28966.1 195 pQVAFQSSGGIGDLNDIAALRGTGVRGVIVGRALLEGKF 233
                   9************************************98 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   4.7e-08     7e-05     158     225 ..      31     107 ..      17     110 .. 0.84
   2 ?   -1.1   0.0      0.72   1.1e+03     205     225 ..     210     230 ..     186     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4.7e-08
  PEP_mutase 158 aieRaraYaeAGAdgvfvpgl........qkdaeiaelvaavdvplnvvpl.kgtlsvaelaelGvarislgnhllr 225
                  + R++aYa+ GA+++  + l        ++ + +++lva vdvp+ v  + +++ +va+l e+Gvar+++g+ +++
  CTQ28966.1  31 PLPRLQAYAAQGAEVLHLVDLtgakdpakRQIPLLKSLVAGVDVPVQVGGGvRTEADVAALLEAGVARVVVGSTAVK 107
                 578************9998877877775444455799*************54888*****************98875 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.72
  PEP_mutase 205 svaelaelGvarislgnhllr 225
                 ++a+l+  Gv+ +++g +ll+
  CTQ28966.1 210 DIAALRGTGVRGVIVGRALLE 230
                 678999999*****9998875 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.1   5.8e-06    0.0087     179     224 ..      59     104 ..      49     112 .. 0.87
   2 !    7.7   0.1    0.0013         2     199     229 ..     202     232 ..     185     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.8e-06
         NMO 179 kglfaLvpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqigtr 224
                 k ++ L+++ +  vd+Pv   GG+ ++ +vaa L +G + v +g+ 
  CTQ28966.1  59 KRQIPLLKSLVAGVDVPVQVGGGVRTEADVAALLEAGVARVVVGST 104
                 6678899999*******************************99975 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0013
         NMO 199 aGGiidrrgvaaaLalGAsgvqigtrfLltk 229
                  GGi d +++aa    G  gv +g ++L  k
  CTQ28966.1 202 SGGIGDLNDIAALRGTGVRGVIVGRALLEGK 232
                 7*************************99765 PP

>> Trp_syntA  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   1.8e-07   0.00027     175     234 ..      51     110 ..      40     119 .. 0.88
   2 ?   -0.9   0.1       0.4   5.9e+02     206     230 ..     204     229 ..     193     239 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.8e-07
                 -SSTTSSB-TTHHHHHHHHHHCTSS-EEEESSS-SHHHHHHHH.TT-SEEEE-HHHHHHHH CS
   Trp_syntA 175 vTgaenavaaevdelverlkkltavPvavGFGistkeqvkqva.kvadGvivGSalvkkie 234
                  Tga++ +++++  l++ l +  +vPv vG G++t+++v+++  ++ + v+vGS  vk  e
  CTQ28966.1  51 LTGAKDPAKRQI-PLLKSLVAGVDVPVQVGGGVRTEADVAALLeAGVARVVVGSTAVKSPE 110
                 688888888887.58889999999*****************999999**********9766 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.4
                 SS-SHHHHHHHH.TT-SEEEE-HHHH CS
   Trp_syntA 206 Gistkeqvkqva.kvadGvivGSalv 230
                 Gi + ++++++  ++  GvivG al+
  CTQ28966.1 204 GIGDLNDIAALRgTGVRGVIVGRALL 229
                 77777888888878889999999886 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   2.5e-05     0.038     132     179 ..      55     103 ..      47     105 .. 0.87
   2 !    5.8   0.0    0.0051       7.7      97     181 .]     138     228 ..     127     228 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.5e-05
    TMP-TENI 132 kdaeplgleglkelaealeiPvvaiGGit.lenvaevleagadgvavvs 179
                 kd++ + + +lk l++ + +Pv + GG++ +++va++leag+++v v s
  CTQ28966.1  55 KDPAKRQIPLLKSLVAGVDVPVQVGGGVRtEADVAALLEAGVARVVVGS 103
                 4667888999******************62568************9976 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0051
    TMP-TENI  97 liiGlSvhsleeaeeaealgadYigvG..pifpTdtKkda..eplgleglkelaeale.iPvvaiGGi.tlenvaevleagadgvavvsai 181
                 + + +S  +++   ++e+l  +Y+ vG  ++  Td   d   +  ++++++e++++   + +   GGi +l+++a+++ +g++gv v +a+
  CTQ28966.1 138 KQVAVSGWQENSGVTLEELVESYLPVGlqHVLCTDISRDGtlAGSNVSLYEEVCARYPqVAFQSSGGIgDLNDIAALRGTGVRGVIVGRAL 228
                 56666666666777777788888766655788888777763455557778888888777888889**955789************998885 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00044      0.66     176     223 ..      66     112 ..      57     125 .. 0.86
   2 !    9.2   0.0   0.00039      0.58     177     218 ..     189     230 ..     182     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00044
                 HHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHH CS
         Dus 176 kevkqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlf 223
                 k++   v +pv + G++++  d+ a le  G+  v++g  a + P  +
  CTQ28966.1  66 KSLVAGVDVPVQVGGGVRTEADVAALLEA-GVARVVVGSTAVKSPEEV 112
                 45556677*******************99.*************99755 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00039
                 HHHHH-S.S-EEEESS--SHHHHHHHHHHH--SEEEESCHHCC CS
         Dus 177 evkqavs.ipviaNGdIkdaedaqaileetGadgvmigrgalg 218
                 ev+ + + + +   G+I d++d+  +l+ tG+ gv++gr+ l+
  CTQ28966.1 189 EVCARYPqVAFQSSGGIGDLNDIA-ALRGTGVRGVIVGRALLE 230
                 78888888999999********96.57889*********9885 PP

>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0028       4.2     214     246 ..      78     110 ..      60     116 .. 0.83
   2 !   11.1   0.0   0.00011      0.16     210     244 ..     197     231 ..     181     240 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0028
                 EESSS-SHHHHHHHCCTT-SEEEESHHHHC-TT CS
        IGPS 214 aeSGiktredveklkeegvnafLvGeslmrqed 246
                    G++t++dv +l e+gv  + vG++ +++++
  CTQ28966.1  78 VGGGVRTEADVAALLEAGVARVVVGSTAVKSPE 110
                 5679**********************9888765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00011
                 SEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC- CS
        IGPS 210 vllvaeSGiktredveklkeegvnafLvGeslmrq 244
                 v   +  Gi + +d+ +l+ +gv++++vG +l++ 
  CTQ28966.1 197 VAFQSSGGIGDLNDIAALRGTGVRGVIVGRALLEG 231
                 55667789************************976 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.9e-06    0.0089     123     187 ..      51     117 ..      37     119 .. 0.86
   2 ?   -2.2   0.1       1.3     2e+03     164     176 ..     216     228 ..     205     238 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.9e-06
                 SSTTS-.SS--HHHHHHHHH.TT--EEEES---SHHHHHHHHTT--SEEEE-H.HHH-HHHHHHHHH CS
        NanE 123 ytkeeekaepDfalvkalse.aglkviaeGrintPekakkaieiGvdavvvGs.aitrleeiakkfv 187
                  t+ + +a+  + l+k+l++  ++ v + G + t +  +  +e Gv+ vvvGs a+  +ee+  +f 
  CTQ28966.1  51 LTGAKDPAKRQIPLLKSLVAgVDVPVQVGGGVRTEADVAALLEAGVARVVVGStAVKSPEEVKGWFK 117
                 5778888999999****986257889**************************8578899***99996 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
                 TT--SEEEE-HHH CS
        NanE 164 eiGvdavvvGsai 176
                  +Gv  v+vG a+
  CTQ28966.1 216 GTGVRGVIVGRAL 228
                 4688999999887 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3   6.1e-06    0.0091     166     209 ..      64     108 ..      45     114 .. 0.85
   2 ?   -1.8   0.0         1   1.5e+03     182     209 ..     203     230 ..     180     238 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.1e-06
                 HHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEES.HHHHT CS
        ThiG 166 alkiiieeakvPvivDAGigspsdaaqamelGadavlln.tavae 209
                  lk +++ ++vPv v  G+++  d+a+ +e G+  v++  tav +
  CTQ28966.1  64 LLKSLVAGVDVPVQVGGGVRTEADVAALLEAGVARVVVGsTAVKS 108
                 68999*****************************99996155544 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1
                 S---SHHHHHHHHHTT-SEEEESHHHHT CS
        ThiG 182 AGigspsdaaqamelGadavllntavae 209
                  Gig  +d+a+    G+ +v++  a+ e
  CTQ28966.1 203 GGIGDLNDIAALRGTGVRGVIVGRALLE 230
                 6999999999999999999999888755 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   9.7e-05      0.14     107     173 ..      33     102 ..      24     114 .. 0.65
   2 ?    0.6   0.1      0.15   2.2e+02     201     239 ..     189     228 ..     172     239 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.7e-05
                 HHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEE...EEEEE-SHHHHHHHHHTT-SEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 107 ervkalveagvdvlvvdsahghsekvleavkeikkkveevev...iaGnvataegakaLieagadavkvG 173
                  r++a +++g++vl +    g ++   +++  +k+ v  v+v   ++G v t++ ++aL+eag+  v vG
  CTQ28966.1  33 PRLQAYAAQGAEVLHLVDLTGAKDPAKRQIPLLKSLVAGVDVpvqVGGGVRTEADVAALLEAGVARVVVG 102
                 5677777777777765555555555555555555555433333246778888888888888887777776 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.15
                 HHHCTC.T-EEEEES---SHHHHHHHHHTT-SEEEESCCC CS
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 201 eaakka.gvpviaDGGikysgdivkAlaaGadavmlGsll 239
                 e+++++ +v   + GGi   +di+     G   v++G+ l
  CTQ28966.1 189 EVCARYpQVAFQSSGGIGDLNDIAALRGTGVRGVIVGRAL 228
                 5555554899999999999999999999999999999876 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.5   0.00074       1.1     258     302 ..      62     104 ..      42     108 .. 0.84
   2 ?    6.0   0.2    0.0034       5.1     271     323 ..     196     243 ..     176     245 .] 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00074
                 HHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHH CS
      FMN_dh 258 idvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRp 302
                 i  L ++v+ v  +++v v gG+r+ +Dv+  l  G   v++G  
  CTQ28966.1  62 IPLLKSLVAGV--DVPVQVGGGVRTEADVAALLEAGVARVVVGST 104
                 55666666666..59*************************99965 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0034
                 SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHH CS
      FMN_dh 271 rievlvDgGirrGsDvlkAlalGAdavllGRpflyglaagGeeGvervleilr 323
                 ++    +gGi   +D++     G ++v++GR++l      G+  v++++++++
  CTQ28966.1 196 QVAFQSSGGIGDLNDIAALRGTGVRGVIVGRALLE-----GKFNVTEAIQCWQ 243
                 55556689************************954.....5566666666665 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00015      0.22     132     170 ..      66     104 ..      57     106 .. 0.86
   2 ?   -3.7   0.0       4.5   6.7e+03      22     165 ..     198     222 ..     185     231 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
                   CTSTTS...EEEEESS--SHHHHHHHCTT.SSEEEE--H CS
  G3P_antiterm 132 keikkelkipiiaGGLietkedveealkaGaiavstsnk 170
                   k++   +++p+  GG ++t+ dv ++l+aG+  v ++++
    CTQ28966.1  66 KSLVAGVDVPVQVGGGVRTEADVAALLEAGVARVVVGST 104
                   66677789***********************99988765 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.5
                   EEE--EETTTHHHHHHHHHHTT-EEEEEGGGEET--SSHHHHHHHHH.TT-SEEEES-HHHHHHHHHTT--EEEEEE--SHHHHHHHHHHHHHHT-S CS
  G3P_antiterm  22 vfllegdilnlkeiveklkkagkkvfvhiDlieGlskdeaaveflkkeikvdGiistksslikkakklglltiqrlfliDssalekalkqiekskpd 118
                    f                                                                                               
    CTQ28966.1 198 AFQ---------------------------------------------------------------------------------------------- 200
                   333.............................................................................................. PP

                   EEEEESGGGHHHHCTSTTS...EEEEESS--SHHHHHHHCTT.SSEE CS
  G3P_antiterm 119 avevlPglvpkvikeikkelkipiiaGGLietkedveealkaGaiav 165
                                            ++G i + +d+ ++   G+ +v
    CTQ28966.1 201 -------------------------SSGGIGDLNDIAALRGTGVRGV 222
                   .........................3444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1895.09
//
Query:       CTQ28967.1  [L=258]
Description: imidazole glycerol phosphate synthase, catalytic subunit with HisH [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-77  259.0   0.7    3.8e-77  258.8   0.7    1.0  1  His_biosynth  Histidine biosynthesis protein
    8.8e-07   28.3   0.1    0.00026   20.2   0.0    2.1  2  Dus           Dihydrouridine synthase (Dus)
    6.5e-05   22.5   0.5       0.02   14.3   0.1    2.1  2  NMO           Nitronate monooxygenase
    0.00014   21.2   0.2     0.0024   17.2   0.1    2.0  2  ThiG          Thiazole biosynthesis protein ThiG
     0.0013   18.1   0.0      0.089   12.1   0.0    2.3  2  TMP-TENI      Thiamine monophosphate synthase
  ------ inclusion threshold ------
      0.038   13.0   0.1       0.33    9.9   0.1    1.8  2  FMN_dh        FMN-dependent dehydrogenase
      0.073   12.5   0.0       0.54    9.6   0.0    2.1  2  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
       0.12   11.6   0.0       0.88    8.7   0.0    2.0  2  DHO_dh        Dihydroorotate dehydrogenase
       0.15   11.0   0.3       0.92    8.4   0.1    1.9  2  IMPDH         IMP dehydrogenase / GMP reductase domain


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.8   0.7   1.9e-80   3.8e-77       1     228 [.       5     239 ..       5     240 .. 0.96

  Alignments for each domain:
  == domain 1  score: 258.8 bits;  conditional E-value: 1.9e-80
                   EEEEEEEEETTEEEEECTTCSTCEEEETTSHHHHHHHHHHHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-S CS
  His_biosynth   1 riipalDlkdGkvVrlvkGdrfqelryagdpvelakryeeegadelhvvDldaakegreanldlveeiaeevfipvqvGGGIrsledveelleagad 97 
                   riip+lD++dG+vV   kG++f+++++ gd+v lakry++egadel+++D++a+++gr +++++v+++ae ++ip++v GGI+sled++++l++gad
    CTQ28967.1   5 RIIPCLDVRDGQVV---KGVQFRNHEIIGDIVPLAKRYADEGADELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCVAGGIKSLEDAAQILSFGAD 98 
                   8*************...******************************************************************************** PP

                   EEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEE....C.EEEEETTTTEE....EEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---HHHHHH CS
  His_biosynth  98 kviigtaavknpelikelaekfgsqkivvaiDarr....g.ykvaikgwree....tgldavelakkleelgageilltdidrdGtlsGpdleltke 185
                   k++i++ a+ +p li++la++fg q+ivv+iD++     g y+v +++++e+    t++++++++++++++gagei+l+ +++dG+++G+dl+++ +
    CTQ28967.1  99 KISINSPALADPTLITRLADRFGVQCIVVGIDTWFdaetGkYHVNQYTGDESrtrvTQWETLDWVEEVQKRGAGEIVLNMMNQDGVRNGYDLQQLAK 195
                   ********************************999665438*********999999***************************************** PP

                   HHHHHSSEEEEESS--SHHHHHHHHHTTC.SEEEESHHHHTTSS CS
  His_biosynth 186 laeavkipviasGGvgsledlkelksegv.davivgsalyegel 228
                   +++ +++p+iasGG+g++e++ e++++   d+++++s+++++ +
    CTQ28967.1 196 VRAVCHVPLIASGGAGTMEHFLEAFRDADvDGALAASVFHKQII 239
                   *************************55555**********9876 PP

>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.3e-07   0.00026     139     225 ..      31     115 ..      17     127 .. 0.84
   2 !    6.2   0.0    0.0024       4.8     139     211 ..     158     229 ..     149     235 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.3e-07
                 .HHHHHHHHHHCT-SEEEEESSECCCTT-CG--CHHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHH CS
         Dus 139 nalelakiveaaGaqaltvHgRtraqnyegtadweaIkevkqavsipviaNGdIkdaedaqaileetGadgvmigrgalgnPwlfae 225
                 +++ lak+  ++Ga++l+    t+    +  +d ++++ v + + ip+ + G+Ik++eda +il+  Gad + i   al +P+l+ +
  CTQ28967.1  31 DIVPLAKRYADEGADELVFYDITASSDGR-VVDKSWVSRVAEVIDIPFCVAGGIKSLEDAAQILSF-GADKISINSPALADPTLITR 115
                 56777888888888888888777766555.4667889****************************9.****************9974 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0024
                 .HHHHHHHHHHCT-SEEEEESSECCCTT-CG--CHHHHHHHHH-SS-EEEESS--SHHHHHHHHHHH--SEEE CS
         Dus 139 nalelakiveaaGaqaltvHgRtraqnyegtadweaIkevkqavsipviaNGdIkdaedaqaileetGadgvm 211
                 ++l+ ++ v++ Ga ++++    ++++ +   d+++ ++v+    +p+ia G+  ++e   ++ +   +dg +
  CTQ28967.1 158 ETLDWVEEVQKRGAGEIVLNM-MNQDGVRNGYDLQQLAKVRAVCHVPLIASGGAGTMEHFLEAFRDADVDGAL 229
                 688999999999999999965.44455555789********************99999999888888888766 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   9.9e-06      0.02     185     222 ..      66     103 ..      52     108 .. 0.89
   2 !    6.5   0.1    0.0023       4.6     150     205 ..     164     213 ..     152     231 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 9.9e-06
         NMO 185 vpqvldavdiPviAaGGiidrrgvaaaLalGAsgvqig 222
                 v +v++++diP   aGGi   ++ a +L+ GA  + i 
  CTQ28967.1  66 VSRVAEVIDIPFCVAGGIKSLEDAAQILSFGADKISIN 103
                 789*****************************988775 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0023
         NMO 150 rkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavdiPviAaGGiidr 205
                  +v++rGa  ++++ +++ G +    +     ++ +++v+ +  +P+iA GG  + 
  CTQ28967.1 164 EEVQKRGAGEIVLNMMNQDGVRN--GY----DLQQLAKVRAVCHVPLIASGGAGTM 213
                 56777777777777777777766..34....35667899*************8765 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.2e-06    0.0024     136     217 ..      35     117 ..      25     131 .. 0.83
   2 ?    2.0   0.0     0.052     1e+02     160     202 ..     183     229 ..     176     238 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.2e-06
                 HHHHHHHTT-SEBEEBSSSTTS----S-HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEESH.HHHTSSSHHHHH CS
        ThiG 136 larrleevGcaavmPlaapiGsglGllnkealkiiieeakvPvivDAGigspsdaaqamelGadavllnt.avaeakdpvamA 217
                 la+r  + G+  ++ +     s   +++k  ++ + e +++P  v  Gi s +daaq + +Gad + +n+ a+a  + + ++A
  CTQ28967.1  35 LAKRYADEGADELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCVAGGIKSLEDAAQILSFGADKISINSpALADPTLITRLA 117
                 7888888888888888777777778899999*************************************984566655555555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.052
                 --S-HHHHHHH...HHH-SS-BEEES---SHHHHHHHH.HTT-SEEE CS
        ThiG 160 Gllnkealkii...ieeakvPvivDAGigspsdaaqam.elGadavl 202
                 G++n + l+ +   ++ ++vP+i   G g+ ++  +a+ +  +d+ l
  CTQ28967.1 183 GVRNGYDLQQLakvRAVCHVPLIASGGAGTMEHFLEAFrDADVDGAL 229
                 6666666665511045569***********99998886234555555 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   4.5e-05     0.089     133     177 ..      57     102 ..      34     105 .. 0.78
   2 ?    3.7   0.0     0.017        33     137     161 ..     188     212 ..     159     237 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.5e-05
    TMP-TENI 133 daeplgleglkelaealeiPvvaiGGit.lenvaevleagadgvav 177
                 d ++++ + ++++ae + iP+++ GGi+ le++a++l  gad +++
  CTQ28967.1  57 DGRVVDKSWVSRVAEVIDIPFCVAGGIKsLEDAAQILSFGADKISI 102
                 44678888899999*************7469***********9987 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.017
    TMP-TENI 137 lgleglkelaealeiPvvaiGGitl 161
                  +l++l+++++ +++P++a GG  +
  CTQ28967.1 188 YDLQQLAKVRAVCHVPLIASGGAGT 212
                 4567777777777777777777543 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.017        35     209     242 ..      67     101 ..      52     104 .. 0.67
   2 ?    9.9   0.1   0.00016      0.33      82     220 ..      68     205 ..      66     209 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.017
                 HHHHHHHSSEEEEE.EE-SHHHHHHHHHTTESEEE CS
      FMN_dh 209 kwlreqtklplvvK.GvltaedakraveaGvdgiv 242
                 +++ e  ++p+ v  G+ + eda +++  G+d i 
  CTQ28967.1  67 SRVAEVIDIPFCVAgGIKSLEDAAQILSFGADKIS 101
                 55556666666554257777777777777777765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00016
                 HHHHHHTS-EEEETT-SS-HHHHHHHHTT-EEEEEE-CSSHHHHHHHHHHHHHC.TESEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSG CS
      FMN_dh  82 raaakagipfvlstvastsleevaaaaegplwfqlyvpkdrelteellkraeaa.gykalvltvDtpvlgkRerdlrngfslppklklrnllqelakpe 179
                 r a+  +ipf++     +sle++a+        ++++++       l+ r ++  g++ +v+ +Dt+++ +  +   n+++  ++   r+ + +  + +
  CTQ28967.1  68 RVAEVIDIPFCVAGG-IKSLEDAAQILS-FGADKISINSPALADPTLITRLADRfGVQCIVVGIDTWFDAETGKYHVNQYTGDES---RTRVTQWETLD 161
                 678888888888877.788888888422.44455555555555556777766666***************999999998877777...44556666666 PP

                 SCCTTH..THHHH....HHCCCHB-TC--HHHHHHHHHHHSSEEE CS
      FMN_dh 180 waaealkkasaaa....efvgkqldpsltwddikwlreqtklplv 220
                 w++e++ k  a +     + ++ +++  + ++++++r+ +++pl+
  CTQ28967.1 162 WVEEVQ-KRGAGEivlnMMNQDGVRNGYDLQQLAKVRAVCHVPLI 205
                 777776.222222235344555668888*************9998 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00027      0.54     129     171 ..      64     106 ..      59     108 .. 0.89
   2 ?    0.4   0.0      0.19   3.8e+02     131     158 ..     193     220 ..     187     238 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00027
                   HHHCTSTTS...EEEEESS--SHHHHHHHCTT.SSEEEE--HH CS
  G3P_antiterm 129 kvikeikkelkipiiaGGLietkedveealkaGaiavstsnke 171
                   + ++++ + ++ip+  +G i++ ed  ++l+ Ga+ +s  +++
    CTQ28967.1  64 SWVSRVAEVIDIPFCVAGGIKSLEDAAQILSFGADKISINSPA 106
                   567899999*****************************98766 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.19
                   HCTSTTS...EEEEESS--SHHHHHHHC CS
  G3P_antiterm 131 ikeikkelkipiiaGGLietkedveeal 158
                   +++++  +++p+ia+G   t e+  ea+
    CTQ28967.1 193 LAKVRAVCHVPLIASGGAGTMEHFLEAF 220
                   57889999******99777777766655 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00044      0.88     235     276 ..      67     106 ..      61     121 .. 0.80
   2 ?    0.3   0.0      0.16   3.3e+02     234     263 ..     193     220 ..     183     224 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00044
                 HHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHH CS
      DHO_dh 235 relykrlkkeipiIgvGGiesgeDalekieaGAslvqvytal 276
                  +++++++  ip    GGi+s eDa   +  GA  + + +  
  CTQ28967.1  67 SRVAEVID--IPFCVAGGIKSLEDAAQILSFGADKISINSPA 106
                 56667777..9**********************999988765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.16
                 HHHHHHHTTT.S-EEEESS--SHHHHHHHH CS
      DHO_dh 234 irelykrlkkeipiIgvGGiesgeDaleki 263
                 + +++++ +  +p+I++GG  + e  le +
  CTQ28967.1 193 LAKVRAVCH--VPLIASGGAGTMEHFLEAF 220
                 555666666..9*******99998888865 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00046      0.92     199     235 ..      66     102 ..      56     108 .. 0.90
   2 ?    0.3   0.0      0.14   2.8e+02     190     225 ..     184     219 ..     170     225 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00046
                 HHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 199 vaeaakkagvpviaDGGikysgdivkAlaaGadavml 235
                 v+++a+  ++p +  GGik+ +d ++ l+ Gad + +
  CTQ28967.1  66 VSRVAEVIDIPFCVAGGIKSLEDAAQILSFGADKISI 102
                 67889999************************99865 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.14
                 --HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 190 vpqltAvaevaeaakkagvpviaDGGikysgdivkA 225
                 v     + + a++ +   vp+ia GG  + ++   A
  CTQ28967.1 184 VRNGYDLQQLAKVRAVCHVPLIASGGAGTMEHFLEA 219
                 555556677888888999********9998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2125.66
//
Query:       CTQ28968.1  [L=199]
Description: fused phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-32  109.8   0.0    6.8e-32  109.1   0.0    1.3  1  PRA-CH    Phosphoribosyl-AMP cyclohydrolase
    4.8e-18   65.4   0.3    6.9e-18   64.9   0.3    1.2  1  PRA-PH    Phosphoribosyl-ATP pyrophosphohydrolase
  ------ inclusion threshold ------
      0.028   14.6   0.1      0.047   13.9   0.1    1.4  1  MazG      MazG nucleotide pyrophosphohydrolase domain


Domain annotation for each model (and alignments):
>> PRA-CH  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.0   1.1e-35   6.8e-32       1      73 [.      29     101 ..      29     102 .. 0.99

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 1.1e-35
                 EEEEE-HHHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-SSTTSBSSS- CS
      PRA-CH   1 mlaymnkealektletgkavyySrsrkklWkKGetSgnvqkvkeirlDcDqDalllkveqkgaaCHtgkesCF 73 
                 m +ymnkealekt +tgk+++ySr++++lW+KGetSg+v++v++i+ DcD+D+ll+ v++ g++CH g++sCF
  CTQ28968.1  29 MHGYMNKEALEKTEATGKVTFYSRTKQRLWTKGETSGHVLNVVSITPDCDNDTLLVLVNPIGPTCHKGTTSCF 101
                 99*********************************************************************** PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.3   1.1e-21   6.9e-18       2      82 ..     112     197 ..     111     198 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 1.1e-21
                 HHHHHHCT----SS----.-HHHHHH....HHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHCT--CHHHHHHHHHH CS
      PRA-PH   2 kefhrligerkpetPeas.taelasl....raaligEEavElleaasegdlaeladelaDllYvtygllvllGidldavfeevhra 82 
                  ++++l+ erk ++Pe+s ta+l++     +a+++gEE vE+  aa  +d+ el +e+ Dl+Y++++ll+ +G+dl +v++++  +
  CTQ28968.1 112 YQLEQLLAERKHADPESSyTAKLYASgtkrIAQKVGEEGVETALAATVNDRFELKNEASDLMYHLLVLLQDQGLDLGEVIDNLRAR 197
                 689*******************************************************************************9877 PP

>> MazG  MazG nucleotide pyrophosphohydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   7.9e-06     0.047       5      61 ..     141     193 ..     137     199 .] 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.9e-06
                 HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH CS
        MazG   5 tllaylleEvgEvaeaIkkedrdeleeELGDvLlqvlflaniaeeeggidledvaet 61 
                  +++ + eE  E a a   +dr el++E  D+++++l l +    ++g+dl +v+++
  CTQ28968.1 141 RIAQKVGEEGVETALAATVNDRFELKNEASDLMYHLLVLLQ----DQGLDLGEVIDN 193
                 5677788999999999999**********************....6********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1545.37
//
Query:       CTQ28969.1  [L=438]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-32  110.5   0.1    1.3e-31  109.7   0.1    1.5  1  Glycos_transf_2  Glycosyl transferase family 2
    2.4e-16   60.0   0.6    4.5e-16   59.2   0.6    1.4  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
    1.5e-12   47.9   0.0    2.2e-12   47.4   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    0.00015   21.2   2.8    0.00023   20.5   2.8    1.3  1  MPS2             Monopolar spindle protein 2
    0.00028   21.0   7.1    0.00047   20.3   7.1    1.2  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
     0.0044   16.2   7.4     0.0077   15.4   7.4    1.3  1  Atg14            Vacuolar sorting 38 and autophagy-related su
     0.0046   16.2   9.4     0.0072   15.6   9.4    1.2  1  HAP1_N           HAP1 N-terminal conserved region
     0.0059   16.4  10.1     0.0095   15.8  10.1    1.3  1  KASH_CCD         Coiled-coil region of CCDC155 or KASH
  ------ inclusion threshold ------
       0.01   14.7   7.6      0.018   14.0   7.6    1.3  1  Spc7             Spc7 kinetochore protein
      0.016   15.7  11.5      0.029   14.9  11.5    1.3  1  APG6_N           Apg6 coiled-coil region
      0.017   14.3   4.7      0.028   13.6   4.7    1.3  1  Tho2             Transcription factor/nuclear export subunit 
       0.02   14.5   4.2      0.031   13.8   4.2    1.2  1  Exonuc_VII_L     Exonuclease VII, large subunit
      0.045   13.6   7.1      0.099   12.5   7.1    1.6  1  Dynactin_p22     Dynactin subunit p22
      0.048   13.0   4.9      0.079   12.3   4.9    1.3  1  DUF4407          Domain of unknown function (DUF4407)
       0.06   13.6   5.1       0.13   12.5   5.1    1.5  1  Med21            Subunit 21 of Mediator complex
      0.065   13.6  10.9       0.11   12.8  10.9    1.3  1  OmpH             Outer membrane protein (OmpH-like)
       0.08   12.8   2.6          7    6.5   0.5    3.1  3  DUF2721          Protein of unknown function (DUF2721)
      0.087   13.3   0.4      0.087   13.3   0.4    2.6  2  Glyco_tranf_2_4  Glycosyl transferase family 2
        0.1   12.6  11.9       0.19   11.7  11.9    1.5  1  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
        0.2   11.2   5.4       0.32   10.6   5.4    1.2  1  HAUS6_N          HAUS augmin-like complex subunit 6 N-terminu
       0.28   11.3   5.1       0.51   10.4   5.1    1.3  1  DUF848           Gammaherpesvirus protein of unknown function
       0.31   11.1   1.4       0.62   10.1   1.4    1.4  1  DUF1515          Protein of unknown function (DUF1515)
       0.37   10.9  12.5       0.67   10.0  11.5    1.6  1  ADIP             Afadin- and alpha -actinin-Binding
       0.39   11.1  10.1      0.084   13.2   2.4    2.4  2  CC2-LZ           Leucine zipper of domain CC2 of NEMO, NF-kap
       0.43   11.3   4.6       0.82   10.3   4.6    1.5  1  YabA             Initiation control protein YabA
       0.45   10.1  12.2       0.97    9.0  10.1    2.1  2  DUF2968          Protein of unknown function (DUF2968)
       0.73   10.4   8.2        2.4    8.7   8.3    1.9  1  DUF16            Protein of unknown function DUF16
       0.81    9.9   8.5        1.5    9.1   8.5    1.3  1  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
       0.84    8.9   7.3        1.2    8.4   7.3    1.1  1  FAM76            FAM76 protein
          1   10.0  10.7        6.9    7.4   2.8    2.9  2  SlyX             SlyX
        1.1    9.7   9.5       0.26   11.6   5.6    2.1  1  GAT              GAT domain
        1.2    9.4  11.8        2.4    8.4   3.5    2.2  2  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
        1.3    9.4   9.8         34    4.8   9.8    2.3  1  DUF641           Plant protein of unknown function (DUF641)
        1.7    8.8   7.5        3.5    7.8   6.9    1.8  1  DUF3847          Protein of unknown function (DUF3847)
        1.7    7.2   5.7        2.4    6.7   5.7    1.1  1  FapA             Flagellar Assembly Protein A
        1.8    7.7   5.9          3    7.0   5.9    1.3  1  TMPIT            TMPIT-like protein
          2    8.8  13.7       0.93    9.9   2.6    2.4  2  Csm1_N           Csm1 N-terminal domain
        2.2    8.8  13.5        8.7    6.9  13.4    2.0  1  ZapB             Cell division protein ZapB
        3.4    8.3  13.2        7.5    7.2  10.2    2.3  2  HIP1_clath_bdg   Clathrin-binding domain of Huntingtin-intera
        4.1    8.0  10.9        1.3    9.6   6.3    2.3  2  bZIP_Maf         bZIP Maf transcription factor
        4.8    7.6  10.7        2.2    8.6   3.5    2.3  2  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
        5.9    7.2  11.8         18    5.7   8.9    2.3  2  ABC_tran_CTD     ABC transporter C-terminal domain
        6.8    6.6  12.8      0.081   12.9   2.1    2.6  3  MIP-T3_C         Microtubule-binding protein MIP-T3 C-termina
        8.7    6.0  11.1       0.14   11.7   3.2    2.0  2  Trimer_CC        Trimerisation motif
        9.8    6.2  10.0        2.4    8.2   0.7    2.3  2  Dzip-like_N      Iguana/Dzip1-like DAZ-interacting protein N-


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   0.1   3.2e-34   1.3e-31       1     129 [.      11     138 ..      11     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 3.2e-34
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      svvip++  ++++  tl  +l+q   +d+e+i++DD+S D+t ++l+++a++d r+r++ +++n G ++++n gl+ a+g+yi+flD+Dd+ d 
       CTQ28969.1  11 SVVIPVHDAAEYISDTLSTILSQ-SLQDIEVIIIDDNSADDTLKLLQSFAANDSRIRLLNNSQNIGAGASRNMGLKIASGEYIIFLDDDDYADA 103
                      8**********************.********************************************************************** PP

                      THHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC CS
  Glycos_transf_2  95 dwleklvealekdgadvvlgqrprifgetdeiern 129
                      + l+++++++   +advv++     +  t+ + ++
       CTQ28969.1 104 NMLKRMYDHAALLQADVVICRCQSLDLQTHSYAPM 138
                      ********************998877777777665 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.6   1.1e-18   4.5e-16       1     104 [.      11     111 ..      11     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 1.1e-18
  Glyco_tranf_2_2   1 svviplraseerhyieervlqkakyydeeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfi 94 
                      svvip++  +  +yi +++  + ++  ++ie+i++dd S++++l+ ++s+ +   ++ l ++  +  + +a+rN G + a +++++FlD D++ 
       CTQ28969.1  11 SVVIPVH--DAAEYISDTLSTILSQSLQDIEVIIIDDNSADDTLKLLQSFAANDSRIRLLNN-SQNIGAGASRNMGLKIASGEYIIFLDDDDYA 101
                      7999985..55668*****888888889*****************************87777.5689*************************** PP

  Glyco_tranf_2_2  95 ssDkfekilk 104
                        ++++++  
       CTQ28969.1 102 DANMLKRMYD 111
                      *****99976 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   5.5e-15   2.2e-12       4     212 ..      10     220 ..       8     238 .. 0.77

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 5.5e-15
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDdD 97 
                      ++v++p+ ++++++ ++l  +l+q+  ++ev++++d+s ++tl+ ++ +aa+ +  r+r++ n++n g  g+sr  n +l+++++++++++DdD
       CTQ28969.1  10 VSVVIPVHDAAEYISDTLSTILSQSLQDIEVIIIDDNSADDTLKLLQSFAANDS--RIRLLNNSQNIGA-GASR--NMGLKIASGEYIIFLDDD 98 
                      79********************************************99988775..5799*****9995.8888..89**************** PP

  Glyco_tranf_2_3  98 tvvePdtlkrllqff..ltpkvgavgtpv.fllnrstl...vsalgalefaerhlrflaarral.gvltlnGsgslirrevlkele.gldplfl 183
                      +  + + lkr+   +  l+++v +  ++   l+  s++   +s+  +l ++ + ++    ++ + ++ +  ++  l+rr+   +++ +++    
       CTQ28969.1  99 DYADANMLKRMYDHAalLQADVVICRCQSlDLQTHSYApmpWSVRVDLLPQKELFSSDEITHNFfDAFIWWPWDKLFRRQAILDTGlQFQD-LR 191
                      *********9988884555555444443322233343377788888887777766666666555356666788888888888888533444.77 PP

  Glyco_tranf_2_3 184 ltdDyelglrlrragfrtayvpgaavrev 212
                      +t D++    ++    r+a++ + ++ ++
       CTQ28969.1 192 TTNDLFFVSAFMLLTKRMAFLDEILISHS 220
                      77888777777777777777777776665 PP

>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   2.8   5.9e-07   0.00023     151     250 ..     334     433 ..     270     436 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5.9e-07
        MPS2 151 klrrsnrklkaLevrveslkdELeakdevlrekeRelleLkkrlseykekYellqrefslykarrveksqnslk.taikheviisElkrklqeqteiis 248
                 +l +sn  + +L++ ++s ++ L+a++e + e    + + k+r++ + ++ ++l+ e++ +++ +  k qn l+ +a +  ++is l  k+++  ++i+
  CTQ28969.1 334 ELESSNLSTEKLQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQ-KQQEQLTKLQNELNnAAQRYSALISSLSWKVTRPLRLIK 431
                 45678889999************************************************.667778888888651667889************999998 PP

        MPS2 249 il 250
                  l
  CTQ28969.1 432 AL 433
                 76 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   7.1   1.2e-06   0.00047      69     154 ..     324     419 ..     304     426 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.2e-06
     UPF0242  69 kleekeaklteld..........eglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqey 154
                  ++ k ++l el+           +++ +++ l+ ++ee +eL+  +++k+e + rl ++n+ L+ + ++ +e+  +l+ el+++ ++   l++ +
  CTQ28969.1 324 LFSLKDRVLHELEssnlsteklqASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQRYSALISSL 419
                 4555566666666556666556678899999**************************************************999888887777765 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   7.4   1.9e-05    0.0077      57     130 ..     330     410 ..     313     429 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.9e-05
       Atg14  57 qledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk.......kRrsdleslqneleerrk 130
                 +   ++++++ + e+l++ ia++ + l+  ++ +++l++++++kk+++ +l + ++       k +++l +lqnel+++ +
  CTQ28969.1 330 RVLHELESSNLSTEKLQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAyleteyqKQQEQLTKLQNELNNAAQ 410
                 455677888899********************************************4444444444444444444444333 PP

>> HAP1_N  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   9.4   1.8e-05    0.0072     206     292 ..     330     416 ..     317     421 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.8e-05
      HAP1_N 206 dcveqlseanqqiaelseelarkleelerqqeeissLlaqivdlqqklkelgveneelkqhLaaskeaqrqLtaELqdlqekyaeve 292
                  + ++l+++n + ++l+  +a++ + l+   eei +L+a + + ++++ +l++ n  l+++ + ++e  ++L++EL++  ++y+   
  CTQ28969.1 330 RVLHELESSNLSTEKLQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQRYSALI 416
                 56789******************************************************************************8765 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8  10.1   2.4e-05    0.0095      59     116 ..     353     410 ..     331     420 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.4e-05
    KASH_CCD  59 lqkaklleeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeeniklla 116
                  q  k+ eeE++el+a+v + +E+  rl ++n  le e q  ++++++Lq+e+   ++
  CTQ28969.1 353 DQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQ 410
                 24457779*******************************************9987665 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   7.6   4.4e-05     0.018     199     287 ..     340     424 ..     317     429 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.4e-05
        Spc7 199 eeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleeltgwkiv 287
                  + e+l+ ++a++++ ++++++e++el++ +++++e+i+ l ++ + le+e +++++ l       ++e+++  ++++al + + wk++
  CTQ28969.1 340 LSTEKLQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLT----KLQNELNNAAQRYSALISSLSWKVT 424
                 344778888888888888888888888888888888888888877777777776655555....4567888888888888888888876 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9  11.5   7.2e-05     0.029      34     108 ..     334     415 ..     315     422 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.2e-05
      APG6_N  34 klkkekkeeek.......qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynel 108
                 +l++++ ++ek       qd+ l++ eee+++l++  +++ e +++l + ++ le e ++++e+l +l++e ++  ++y++l
  CTQ28969.1 334 ELESSNLSTEKlqasiasQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQRYSAL 415
                 4444433333355555556788888888888888888888888888888888888888888888888888888888888876 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   4.7     7e-05     0.028      30      96 ..     348     414 ..     333     436 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7e-05
        Tho2  30 eieklkseieel......akdrsde.raaakkkkkekkrlkeliekLeeEkkeqiehvekvkkrLkeekkswfk 96 
                  i+               ++++ de ra+ ++kk++++rl ++ + Le+E ++q+e+  k +++L++  +++ +
  CTQ28969.1 348 SIAS-------QdqvlkaREEEIDElRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQRYSA 414
                 3333.......33333434555556699***************************************9998765 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   4.2   7.8e-05     0.031     155     251 ..     326     414 ..     288     434 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.8e-05
  Exonuc_VII_L 155 rlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlkekleekkerlkklkerlelleekkerlee 251
                   +l++ + + le+++   ekl+ +++s++++l+++++++del++++ +  k+++++  +r   l+    +++++++e+l+kl+++l+   ++ +r+++
    CTQ28969.1 326 SLKDRVLHELESSNLSTEKLQASIASQDQVLKAREEEIDELRASVAQ-KKERIDRLVQRNAYLE----TEYQKQQEQLTKLQNELN---NAAQRYSA 414
                   45556666677777777788888888888888888888887777777.4555444444444444....444455555555544444...22222222 PP

>> Dynactin_p22  Dynactin subunit p22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   7.1   0.00025     0.099      80     161 ..     344     422 ..     326     425 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00025
  Dynactin_p22  80 KleliLaeedeLkktaalleqlqeLkpvldseeikdvpelkekLekLsqihlkqqeeveelseevkkllekYnklvltlskq 161
                   Kl++ +a++d+  k     e+++eL   + +++ + ++ l ++ + L+  + kqqe++ +l++e+++  ++Y++l+++ls +
    CTQ28969.1 344 KLQASIASQDQVLKAR--EEEIDELRASVAQKKER-IDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQRYSALISSLSWK 422
                   6666666666666544..47899999999877755.999999999**********************************966 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.9    0.0002     0.079     111     248 ..     354     413 ..     329     433 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0002
     DUF4407 111 elaeeqqeeakelkeqlaaa.............ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaq 196
                 ++ + ++ee++el++++a++             l++e+++ ++q+++lq+e+++a +r+                                        
  CTQ28969.1 354 QVLKAREEEIDELRASVAQKkeridrlvqrnayLETEYQKQQEQLTKLQNELNNAAQRY---------------------------------------- 412
                 34444455555555555544333333333333333333333333333333333333333........................................ PP

     DUF4407 197 aelaelkakldatarlaalraelaeleaerakeraasqaaaaaddGllarle 248
                                                                     
  CTQ28969.1 413 ---------------------------------------------------S 413
                 ...................................................3 PP

>> Med21  Subunit 21 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   5.1   0.00034      0.13      60     125 ..     351     416 ..     322     432 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00034
       Med21  60 pepdspeefaatqrelardlilkeqqIeyLIssLPgigsseeeqeerikeLeeelreveeereekv 125
                 ++ +  ++ +++++el   +++k+ +I+ L+++   ++++ ++q+e++ +L++el+++++++ + +
  CTQ28969.1 351 SQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQRYSALI 416
                 445555677899**********************************************99988766 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8  10.9   0.00028      0.11      10      93 ..     331     408 ..     328     425 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00028
                 HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellkp 93 
                 +l e +  +   e+l++ +++ ++ l+a+e+e+++l++       +  k+e+   l ++++ l++++q+++++l k q+el + 
  CTQ28969.1 331 VLHELESSNLSTEKLQASIASQDQVLKAREEEIDELRASVA----Q--KKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNA 408
                 55555666666777888888888888888888888888884....3..456666677777777777777777777777776653 PP

>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       4.2   1.7e+03      47      71 ..      52      76 ..      39      80 .. 0.74
   2 ?    4.3   0.0     0.085        34     101     126 ..     196     221 ..     182     224 .. 0.88
   3 ?    6.5   0.5     0.018         7      20      63 ..     375     415 ..     371     424 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 4.2
     DUF2721 47 eelakeiknlrrRarlirrailllv 71
                 +l +  +  + R+rl+++++ +++
  CTQ28969.1 52 LKLLQSFAANDSRIRLLNNSQNIGA 76
                466677777889*****99998765 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.085
     DUF2721 101 lfvlalllllvslllflrEirlslra 126
                 lf+++ ++ll+  + fl Ei++s++ 
  CTQ28969.1 196 LFFVSAFMLLTKRMAFLDEILISHSI 221
                 899********************876 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.018
     DUF2721  20 nRlariadrirqLedeleelaeeeeedeelakeiknlrrRarli 63 
                  R+ r+++r   Le+e+++++e+    ++l++e++n  +R + +
  CTQ28969.1 375 ERIDRLVQRNAYLETEYQKQQEQ---LTKLQNELNNAAQRYSAL 415
                 6999**************55554...689**********98766 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   0.00022     0.087       2      83 ..      18     100 ..      17     126 .. 0.77
   2 ?   -1.3   0.2       8.4   3.4e+03      31      69 ..     364     405 ..     351     416 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00022
  Glyco_tranf_2_4   2 neadiLpeflahhlalgfd..rilvydndstDgtrailke....lpevkllhvdksyederrqvellkallaryaeadwvlvvDaDEf 83 
                      ++a+++  +l  +l+   +  +++++d++s D+t ++l++      +++ll++ +++        + +++  ++a +++++++D D +
       CTQ28969.1  18 DAAEYISDTLSTILSQSLQdiEVIIIDDNSADDTLKLLQSfaanDSRIRLLNNSQNIG-----AGASRNMGLKIASGEYIIFLDDDDY 100
                      68889999999988877752359***************88433235577887777775.....3444445556678899999998876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 8.4
  Glyco_tranf_2_4  31 Dgtrailkel.pevkllhvdksyederrq..vellkallary 69 
                      D+ ra +++  ++++ l  +++y + ++q   e l++l+++ 
       CTQ28969.1 364 DELRASVAQKkERIDRLVQRNAYLETEYQkqQEQLTKLQNEL 405
                      566666644425577666666663333331133444444443 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  11.9   0.00049      0.19       3      72 ..     345     414 ..     343     415 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00049
  TMF_DNA_bd   3 lekklkeKDeqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlke 72 
                 l++ +++ D+ +++  eE  +L+++  + ++ i++L + n+ le+e ++++++l kl+ el++  +r+++
  CTQ28969.1 345 LQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQRYSA 414
                 788999***********************************************************99875 PP

>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.4   0.00079      0.32     108     196 ..     321     414 ..     320     429 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00079
     HAUS6_N 108 ielLlsfssfVlkkvlkeksk.....klalevreaaskkaqdlsklvaahrvslrrflrekaaadrarqkyqenaqllekkerelraeleelqa 196
                 +e+L+s+   Vl+++ +++ +     ++  ++ ++++ +++++ +l a ++ +++r+ r +++  ++ ++yq++++ l+k + el++  ++++a
  CTQ28969.1 321 EEYLFSLKDRVLHELESSNLSteklqASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQRYSA 414
                 689***********99999995555544444455555555555555555555555555555555556666666666666666666655555555 PP

>> DUF848  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   5.1    0.0013      0.51      54     121 ..     341     408 ..     325     424 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0013
      DUF848  54 rtkeikalveavdteieakkkelslLkklnrkkvarveeLtdkvlelkeevsleldsleeaqeeyqeg 121
                  t++++a++   d++++a++ e++ L++   +k +r++ L+++ + l+ e + + ++l++ q+e ++ 
  CTQ28969.1 341 STEKLQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNA 408
                 578999**********************9999******************************998854 PP

>> DUF1515  Protein of unknown function (DUF1515)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.4    0.0015      0.62      10      68 ..     342     403 ..     337     415 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0015
     DUF1515  10 lgtllaevkelredlkrsedrsdasrakmyr...kmdelvervtalegsvvklkaditsvke 68 
                 +++l+a +    + lk  e+  d  ra++ +   ++d lv+r + le+   k ++ +t++++
  CTQ28969.1 342 TEKLQASIASQDQVLKAREEEIDELRASVAQkkeRIDRLVQRNAYLETEYQKQQEQLTKLQN 403
                 6789999999999999999999999998876222689********************99875 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  11.5    0.0017      0.67      54     109 ..     355     410 ..     343     419 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0017
        ADIP  54 qreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleq 109
                 + ++ +e+i +l+a+ ++++ +i+rl ++++ le+e + +q+++++l+ +l ++ q
  CTQ28969.1 355 VLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQ 410
                 5678899******************************************9998876 PP

>> CC2-LZ  Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.4   0.00021     0.084      15      52 ..     341     378 ..     329     383 .. 0.88
   2 ?    4.0   3.1      0.17        66      11      49 ..     372     410 ..     369     420 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00021
      CC2-LZ  15 eieeLkaqlqaaeealaakqeeidelkeeikkkeeele 52 
                   e+L+a + + +++l+a++eeidel++++++k+e ++
  CTQ28969.1 341 STEKLQASIASQDQVLKAREEEIDELRASVAQKKERID 378
                 6789******************************9775 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.17
      CC2-LZ  11 vkkeeieeLkaqlqaaeealaakqeeidelkeeikkkee 49 
                 +kke i++L ++    e  ++++qe++ +l++e+++  +
  CTQ28969.1 372 QKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQ 410
                 468999999999999999999999999999999887665 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.6    0.0021      0.82      10      64 ..     356     410 ..     342     420 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXX CS
        YabA  10 leeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkk 64 
                 l++ ee+++el +++++ ke++ +l+++na Le+e +k +e+l++ +++ ++  +
  CTQ28969.1 356 LKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQ 410
                 566789999999999999*****************99999999766665555544 PP

>> DUF2968  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       1.1   4.4e+02     113     140 ..     104     131 ..      97     135 .. 0.83
   2 ?    9.0  10.1    0.0024      0.97      93     172 ..     334     413 ..     319     419 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1.1
     DUF2968 113 rqiaasearaerLqadlavarqQeqava 140
                 +++++  ++a+ Lqad+ + r Q   ++
  CTQ28969.1 104 NMLKRMYDHAALLQADVVICRCQSLDLQ 131
                 56778889*************9987665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0024
     DUF2968  93 elaeveirrikleaqkaqlerqiaasearaerLqadlavarqQeqavaerQkqarkeaaaLeaqreaaqaqlralqrqir 172
                 el + ++   kl+a  a+ +++++a+e+++ +L+a +a +++   ++ +r + + +e ++ ++q +++q++l+++ ++ +
  CTQ28969.1 334 ELESSNLSTEKLQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQRYS 413
                 56667788889****************************************99999999999999999999998877655 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   8.3    0.0061       2.4      32      98 ..     352     411 ..     326     431 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0061
                 BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHH CS
       DUF16  32 nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkR 98 
                         ++ +++++e+i++l   v ++ e+i++l ++    + e +k++e l  + + L++  +R
  CTQ28969.1 352 Q-------DQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQR 411
                 3.......34445566666666666666666666666666666666666666666666666666555 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   8.5    0.0037       1.5       5     102 ..     314     410 ..     312     413 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0037
                   HHHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   5 klirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekll 101
                   +lir  pe++  +lk R + +++  + l+ ++ + ++ ++ + l+a+  e+ +  ++  +kke +++l+++ + l +e ++ +++l++l++el++++
    CTQ28969.1 314 RLIRLTPEEYLFSLKDR-VLHELESSNLSTEKLQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAA 409
                   79999999******999.7889999999999999999999999****999999999999999********************************987 PP

                   C CS
  Seryl_tRNA_N 102 l 102
                   +
    CTQ28969.1 410 Q 410
                   6 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   7.3    0.0031       1.2     229     294 ..     343     407 ..     326     413 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0031
       FAM76 229 aslkkqleqkdqellekdkkitelkaellekekelreklkelekeakekieklekkirellkevae 294
                 ++l+  ++++dq+l +++ +i el+a   + +ke  ++l ++++  +++ +k +++ ++l+ e+ +
  CTQ28969.1 343 EKLQASIASQDQVLKAREEEIDELRASVAQ-KKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNN 407
                 68999*********************8765.56667889999999999999999999999888654 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.8     0.017       6.9      16      44 ..     360     388 ..     339     393 .. 0.67
   2 ?    5.9   1.7     0.049        20      26      52 ..     391     417 ..     386     421 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX  16 edtieeLndvvaeqqqqidrlqrqlrlla 44 
                 e+ i+eL + va+  ++idrl ++ ++l+
  CTQ28969.1 360 EEEIDELRASVAQKKERIDRLVQRNAYLE 388
                 56677777777777777777777776665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.049
                 HHHHHHHHHHHHHHHHHHHHT-XXXXX CS
        SlyX  26 vaeqqqqidrlqrqlrllaerlkelee 52 
                   +qq+q+++lq +l+  a+r ++l +
  CTQ28969.1 391 YQKQQEQLTKLQNELNNAAQRYSALIS 417
                 568999999999999999999888765 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.6   0.00065      0.26      10      75 ..     348     416 ..     339     418 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00065
         GAT  10 mLsstepdeellenellkeLyetckamqpriqklieet....adeed.llaelLqlNDeLnnvlerYerlk 75 
                  ++s ++    + +e ++eL  ++ + ++ri +l+++     + e +   ++l +l  eLnn+ +rY++l 
  CTQ28969.1 348 SIASQDQV-LKAREEEIDELRASVAQKKERIDRLVQRNayleT-EYQkQQEQLTKLQNELNNAAQRYSALI 416
                 44554433.33579***********************655542.22236689***************9986 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   3.5     0.006       2.4      64     113 ..     333     382 ..     316     384 .. 0.87
   2 ?    5.4   1.2     0.053        21      25      52 ..     388     415 ..     385     422 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.006
  TMF_TATA_bd  64 keleelekeleelqeryetlLellGeksEeveELraDvaDlKemykeqve 113
                  +ele+ + + e+lq    +  ++l+ ++Ee++ELra va  Ke + ++v+
   CTQ28969.1 333 HELESSNLSTEKLQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQ 382
                  456666668999999999999**********************9999998 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.053
  TMF_TATA_bd  25 EgElaslkeelerleaerdeareeivkl 52 
                  E+E+++ +e+l++l++e ++a++   +l
   CTQ28969.1 388 ETEYQKQQEQLTKLQNELNNAAQRYSAL 415
                  5555555555555555555555554444 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   9.8     0.086        34      56     114 ..     327     383 ..     301     417 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.086
      DUF641  56 lkrlyrkkqkkkaseaeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkek 114
                 lk++ +++ +++  + ++++l+a i  q ++lk+ e  +++l+a + +k++ i++L ++
  CTQ28969.1 327 LKDRVLHELESS--NLSTEKLQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQR 383
                 555555543333..357888888888888888888888888888888888888888554 PP

>> DUF3847  Protein of unknown function (DUF3847)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.9    0.0087       3.5       2      61 ..     342     400 ..     341     405 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0087
     DUF3847   2 leeLkaelekaekklrqaehkekiLenrlkyleRkeRtHrLitrGaalEs.ilpeakeLte 61 
                 +e+L+a ++   + l++ e ++   e r + ++ keR  rL++r a lE  + ++ ++Lt+
  CTQ28969.1 342 TEKLQASIASQDQVLKAREEEID--ELRASVAQKKERIDRLVQRNAYLETeYQKQQEQLTK 400
                 799*******9999998776655..56889999****************636677888887 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.7     0.006       2.4     340     412 ..     343     409 ..     324     425 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.006
        FapA 340 keleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskk 412
                 ++l+  + +  + l+  +++i++l++        ++kke +++l +    l++e+++ +e+l +l++el++ +
  CTQ28969.1 343 EKLQASIASQDQVLKAREEEIDELRA------SVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELNNAA 409
                 23333333333333333333444444......22345677888888888888888888888888888887762 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.9    0.0076         3       4      92 ..     335     422 ..     328     433 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0076
       TMPIT   4 weelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlkevesllpkk 92 
                 +e+ + ++++l+++  +  q l+  ++ +++++ +++++k+r+ +l ++   l+++  ++++e++++l++el+++ +  + + s+l  k
  CTQ28969.1 335 LESSNLSTEKLQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEY-QKQQEQLTKLQNELNNAAQRYSALISSLSWK 422
                 555556678888888888888999999999999999999999999999999998885.6999999999999999988888777776655 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.4     0.041        16       8      63 ..     328     383 ..     322     384 .. 0.82
   2 ?    9.9   2.6    0.0023      0.93      22      59 ..     377     414 ..     376     420 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.041
      Csm1_N   8 KesVqerldsAdllvsklvhENsvLsqkletkdqeiesLkeqlaeleekvkeleer 63 
                 K+ V   l+s +l  +kl       +q l+ +++ei +L++ +a+ +e++++l +r
  CTQ28969.1 328 KDRVLHELESSNLSTEKLQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQR 383
                 5566667777788888887777788999*********************9988765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0023
      Csm1_N  22 vsklvhENsvLsqkletkdqeiesLkeqlaeleekvke 59 
                 + +lv+ N  L+++ +++++++ +L+++l+++ ++ + 
  CTQ28969.1 377 IDRLVQRNAYLETEYQKQQEQLTKLQNELNNAAQRYSA 414
                 789****************************9998765 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  13.4     0.022       8.7       9      70 ..     345     406 ..     331     407 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.022
        ZapB   9 LEskiqkaidtitlLqmeieeLkeeneelkeenreleeeneqlkeereawqerlkkLLgkle 70 
                 L+++i +  + +++  +ei+eL++ +++ ke++++l + n  l++e +++qe l kL ++l+
  CTQ28969.1 345 LQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNELN 406
                 555555555555555689**************************************988887 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.5      0.24        97      55      94 ..     329     368 ..     325     370 .. 0.88
   2 ?    7.2  10.2     0.019       7.5       9      76 ..     347     420 ..     344     428 .. 0.61

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.24
  HIP1_clath_bdg  55 ekLkreleakraelarlkssLesseqsgeqlssqlaaLqa 94 
                     +++ +ele+++   ++l++s++s+ q  +  ++++++L+a
      CTQ28969.1 329 DRVLHELESSNLSTEKLQASIASQDQVLKAREEEIDELRA 368
                     566789*******************999999999999875 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.019
  HIP1_clath_bdg   9 Aevtkqlsvarqaqeeverekkeleeelerlkeeaerkle......eqkeelekLkreleakraelarlkssLe 76 
                     A ++ q +v ++  ee++  +  ++++ er+ +  +r+        +q+e+l kL++el++  ++ + l ssL+
      CTQ28969.1 347 ASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQRNAYleteyqKQQEQLTKLQNELNNAAQRYSALISSLS 420
                     55566666666666666666666666655554433333222222337888888888888888887777777775 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.6       2.4   9.8e+02      47      90 ..     329     372 ..     317     374 .. 0.76
   2 ?    9.6   6.3    0.0033       1.3      39      85 ..     369     416 ..     365     420 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 2.4
    bZIP_Maf  47 krrlqqkeelekekeeleeelerlqqelsrlrqekdalkrkneq 90 
                 +r l++ e+ + + e+l+ +  +  q l+++++e d+l++  +q
  CTQ28969.1 329 DRVLHELESSNLSTEKLQASIASQDQVLKAREEEIDELRASVAQ 372
                 56677777777888888888888888888888888888876655 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0033
    bZIP_Maf  39 rgyakscrkrrlqqke.elekekeeleeelerlqqelsrlrqekdalk 85 
                 ++++k+ r  rl q++  le+e+++ +e+l +lq+el+ + q++ al+
  CTQ28969.1 369 SVAQKKERIDRLVQRNaYLETEYQKQQEQLTKLQNELNNAAQRYSALI 416
                 6788888876665555169***********************999886 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.5    0.0055       2.2       5      63 ..     327     385 ..     324     388 .. 0.93
   2 ?    3.7   0.9      0.19        77       3      23 ..     388     408 ..     384     414 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0055
  Val_tRNA-synt_C   5 eraRLeKeLaklekeiervqkKLanpgFveKAPaeVVeeekaklaeleeqaeklkerLs 63 
                      +++R   eL+  +   e++q  +a ++ v KA +e ++e +a +a+ +e  ++l +r +
       CTQ28969.1 327 LKDRVLHELESSNLSTEKLQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQRNA 385
                      6889999***********************************************99855 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.19
  Val_tRNA-synt_C   3 ekeraRLeKeLaklekeierv 23 
                      e e ++++ +L kl+ e+  +
       CTQ28969.1 388 ETEYQKQQEQLTKLQNELNNA 408
                      445555555555555555544 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   3.1      0.08        32      25      68 ..     343     388 ..     331     389 .. 0.69
   2 ?    5.7   8.9     0.045        18      14      67 ..     360     415 ..     356     416 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.08
  ABC_tran_CTD  25 aeleaeladpelysdp..eklaelsaeleeleaeLeelyerWeeLe 68 
                   ++l+a +a+ +   +   e++ el a  ++ ++ +++l +r  +Le
    CTQ28969.1 343 EKLQASIASQDQVLKAreEEIDELRASVAQKKERIDRLVQRNAYLE 388
                   4555555555555222238899999999999999999988877776 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.045
  ABC_tran_CTD  14 eaeIeaLE....eeiaeleaeladpelysdpeklaelsaeleeleaeLeelyerWeeL 67 
                   e+eI++L     ++++ ++  ++ +++   +++ ++ +++l++l++eL+++ +r+  L
    CTQ28969.1 360 EEEIDELRasvaQKKERIDRLVQRNAYL--ETEYQKQQEQLTKLQNELNNAAQRYSAL 415
                   4555555400004444455555555533..3789******************999876 PP

>> MIP-T3_C  Microtubule-binding protein MIP-T3 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3       1.3   5.4e+02     113     151 ..      29      69 ..      18      72 .. 0.73
   2 ?   12.9   2.1    0.0002     0.081     106     152 ..     336     382 ..     327     384 .. 0.90
   3 ?   -1.5   0.2       5.5   2.2e+03      96     127 ..     393     406 ..     385     423 .. 0.45

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.3
    MIP-T3_C 113 eplkaqlaeleeaIkdqkekisnvr..akilkNeakiqkll 151
                   l + l+++e  I d ++  ++++  ++  +N+++i  l 
  CTQ28969.1  29 TILSQSLQDIEVIIIDDNSADDTLKllQSFAANDSRIRLLN 69 
                 568899*******9998765554443389999999998775 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.0002
    MIP-T3_C 106 rateealeplkaqlaeleeaIkdqkekisnvrakilkNeakiqkllk 152
                 +  + ++e+l+a +a  ++ +k ++e+i+++ra++ + +++i++l++
  CTQ28969.1 336 ESSNLSTEKLQASIASQDQVLKAREEEIDELRASVAQKKERIDRLVQ 382
                 5566789**************************************97 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 5.5
    MIP-T3_C  96 qqaeelaeerrateealeplkaqlaeleeaIk 127
                 +q+                  +ql +l+++++
  CTQ28969.1 393 KQQ------------------EQLTKLQNELN 406
                 222..................22222222222 PP

>> Trimer_CC  Trimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.2   0.00036      0.14      15      45 ..     349     380 ..     339     383 .. 0.77
   2 ?   -2.4   1.0       9.2   3.6e+03      31      46 ..     387     402 ..     386     406 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00036
                 XXXXXX-.-HHHHHHHHHHHHHHHHHHHHHHH CS
   Trimer_CC  15 tpssdav.SRLEEelrkLqatVQelQkRLDrL 45 
                 + s+d v    EEe+ +L+a V ++ +R+DrL
  CTQ28969.1 349 IASQDQVlKAREEEIDELRASVAQKKERIDRL 380
                 44444441445********************9 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 9.2
                 HHHHHHHHHHHHHHHH CS
   Trimer_CC  31 LqatVQelQkRLDrLE 46 
                 L +  Q++Q+ L +L 
  CTQ28969.1 387 LETEYQKQQEQLTKLQ 402
                 5667799999998886 PP

>> Dzip-like_N  Iguana/Dzip1-like DAZ-interacting protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.7    0.0059       2.4      61     115 ..     313     368 ..     294     371 .. 0.84
   2 ?    3.6   3.2      0.16        63      78     117 ..     366     405 ..     364     415 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0059
  Dzip-like_N  61 frlaQlvi.eYLlhsqelLakslekleerlqeaqaeaeelekelakqeeelkklkk 115
                  +rl  l+  eYL  +++ + ++le+ +   ++ qa++ ++ + l+ +eee+ +l++
   CTQ28969.1 313 YRLIRLTPeEYLFSLKDRVLHELESSNLSTEKLQASIASQDQVLKAREEEIDELRA 368
                  7888888537************9999999999999999999999999999999986 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.16
  Dzip-like_N  78 Lakslekleerlqeaqaeaeelekelakqeeelkklkkes 117
                  L  s+++ +er+++  ++   le+e +kq+e+l kl++e 
   CTQ28969.1 366 LRASVAQKKERIDRLVQRNAYLETEYQKQQEQLTKLQNEL 405
                  6778888999999999999999999999999999998884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1645  (0.0917508); expected 358.6 (0.02)
Passed bias filter:                      759  (0.0423336); expected 358.6 (0.02)
Passed Vit filter:                       188  (0.0104858); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              45  [number of targets reported over threshold]
# CPU time: 0.67u 0.34s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 2973.59
//
Query:       CTQ28970.1  [L=377]
Description: Galactosyl transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-26   92.0   0.0    5.3e-26   91.2   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    7.9e-19   68.4   0.0    1.5e-18   67.5   0.0    1.5  1  Glyco_trans_1_4  Glycosyl transferases group 1
    8.1e-19   68.0   0.7    1.4e-18   67.3   0.7    1.3  1  Glyco_trans_4_2  Glycosyl transferase 4-like
    8.9e-09   35.6   0.0      3e-08   33.9   0.0    1.9  1  Glyco_trans_1_2  Glycosyl transferases group 1
    0.00016   21.7   0.0    0.00027   21.0   0.0    1.4  1  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0   1.5e-29   5.3e-26      10     172 .]     190     353 ..     183     353 .. 0.90

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 1.5e-29
                      TTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES....STTHHHHHHH.HHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEE CS
  Glycos_transf_1  10 gknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG...ngeeekelkkl.aeelelsdnviflgevsredleellknadifvlp 99 
                      + +++ +++l+ +r+   Kg+  li+a + l+ + +  + l +aG   + ++++ ++ + +e+ + +  +++lg+++  ++  l+++++i++lp
       CTQ28970.1 190 EQDHDVPVVLFASRMLWSKGLGDLIEAKKILRSK-DIHFTLNVAGilvE-NDKDAISLQvIENWHQQGLINWLGRSN--NVCDLIEQSNIVALP 279
                      6678899************************998.***********742.333333322268888888899999999..*************** PP

                      ESS.BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHHHHH CS
  Glycos_transf_1 100 sis.EgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgenarkr 172
                      s + Eg +  llEA ++g ++ia+++gg+  ++ d+++G++vk+n++e+la++++ ll++++ r+++g ++rkr
       CTQ28970.1 280 SVYsEGVPRILLEASSVGRACIAYDVGGCDSLIIDNDNGIIVKSNSPEELADKLAFLLSNPKARVEMGIKGRKR 353
                      *999*******************************************************************996 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   4.2e-22   1.5e-18       2     134 .]     196     339 ..     195     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 4.2e-22
                      EEEEEES---GG.GTHHHHHHHHHHHH.HH..EEEEEES...---...HHHHHHHT.T-T.T.EEEE---THHHHHHHH-SEEEE--...---S CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllrkkd..vrlvivG...dgp.rpeeleelaa.gleer.veftGfvedlaellaaadvfvaPs...egfg 84 
                      pv+lf +r+  + kg+  l+ea + lr+kd  ++l ++G   +++ ++ +l+  ++   +++ + ++G+ +++ +l+++++++ +Ps   eg++
       CTQ28970.1 196 PVVLFASRM-LWSKGLGDLIEAKKILRSKDihFTLNVAGilvENDkDAISLQ-VIEnWHQQGlINWLGRSNNVCDLIEQSNIVALPSvysEGVP 287
                      799******.566**************9976799*****6663332222333.3333223446*******99*****************99*** PP

                      HHHHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4  85 lkllEamaaglpvVatdvggiaevv..gengllvppgdpealaeailrLled 134
                        llEa ++g++++a dvgg+  ++  ++ng++v++++pe+la++++ Ll++
       CTQ28970.1 288 RILLEASSVGRACIAYDVGGCDSLIidNDNGIIVKSNSPEELADKLAFLLSN 339
                      ********************98888999*******99***********9986 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.7   3.9e-22   1.4e-18       1     136 [.       3     150 ..       3     152 .. 0.74

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 3.9e-22
  Glyco_trans_4_2   1 killlanlssvhtlrlake...LakrgyeVhvitp.kkga.kdeleaegihvhrlkvdrkg..pleylk.afklkklikkikPDvvhahyakpy 86 
                      k++++ n +++++l++++     +++gye+h+i+   ++   ++ +  g+ +h++++d ++  +l +++ +  + k+ik ikPD++h++++kp 
       CTQ28970.1   3 KLCYFINSDWYFDLHWIDRaiaSRDAGYEIHIISHfIDDNiINKFKTFGFICHNVTLDAQSfnALVFFRtYHDVQKIIKNIKPDLLHCITIKPC 96 
                      89**************8874335677*********6444444444455666777777755557777887678********************97 PP

  Glyco_trans_4_2  87 gllgslaarlsgvipvvlsvwGldv.lkfpkksk..lkkl....llklalkkatkvi 136
                       l+g+ +a++ +  pv++s+ Gl+  ++++ +    l ++    ++k+ ++++++++
       CTQ28970.1  97 -LIGGVLAKKFN-LPVIVSFVGLGRvFSSDSMPLklL-RKftiaAYKYIANNKRCIF 150
                      .55666666665.9*********98766655542342.2235558888888888776 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   8.4e-12     3e-08      14      82 ..     289     359 ..     267     368 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 8.4e-12
  Glyco_trans_1_2  14 rlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaeht 82 
                       l+Ea   G+  ++ d  g + l+ +++ +i+++  ++eela+k+++ll+np+ r ++++++r+r++ +++
       CTQ28970.1 289 ILLEASSVGRACIAYDVGGCDSLIIDNDNGIIVKsnSPEELADKLAFLLSNPKARVEMGIKGRKRIQDKFS 359
                      579**************************************************************998775 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   7.5e-08   0.00027      16     136 ..      26     148 ..      17     183 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 7.5e-08
  Glyco_transf_4  16 arrGheVtvvtpgddgpleeev..elvvrvprvpl.pllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrlgiplVltvHgly 107
                     +++G+e++++++  d+ + ++     +   + v l   + ++l  ++ + ++++++k+ kpD++H+ +  +++ +++ +++  ++p+++++ gl 
      CTQ28970.1  26 RDAGYEIHIISHFIDDNIINKFktF-GFICHNVTLdAQSFNALVFFRTYHDVQKIIKNIKPDLLHCITIKPCLIGGVLAKK-FNLPVIVSFVGLG 118
                     6789******999999999996641.2222222221455567778888999************************999998.********99999 PP

  Glyco_transf_4 108 e.krllkarlkplsrllralerrllrradr 136
                        +     lk+l+++  a +++++++ ++
      CTQ28970.1 119 RvFSSDSMPLKLLRKFTIAAYKYIANNKRC 148
                     764444555556666666666666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2992.98
//
Query:       CTQ28971.1  [L=297]
Description: Glycosyltransferase, group 2 family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-17   62.7   0.0    4.9e-17   62.3   0.0    1.3  1  Glycos_transf_2  Glycosyl transferase family 2
    3.5e-12   46.7   0.0    5.5e-12   46.1   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    7.8e-07   29.5   0.0    1.6e-06   28.5   0.0    1.5  1  Glyco_tranf_2_4  Glycosyl transferase family 2
    0.00086   18.8   0.0     0.0013   18.2   0.0    1.2  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
  ------ inclusion threshold ------
       0.51   10.1   2.1       0.39   10.5   0.4    1.7  2  Antimicrobial12  Pleurocidin family


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   1.4e-20   4.9e-17       2     120 ..       5     121 ..       4     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 1.4e-20
                      EEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SS....EEEEEESSEE CS
  Glycos_transf_2   2 vviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgd....yilflDaDde 91 
                      + i+t+N+   l++t+e  l+    +   i++v++gStD+t+++l +++  d rv+v++++en+G ag++ +g ++   +    +++f D+D +
       CTQ28971.1   5 ALIVTFNRLGKLKKTVEETLKL---EFTNIVIVNNGSTDGTQAWLSSIV--DTRVIVLTLTENTGGAGGFKTGSQYICEQlasdWVFFYDDDAY 93 
                      579**************99999...999********************9..7*********************88766655666********** PP

                      E-TTHHHHHHHHHHH.TTCEEEEEEEEEE CS
  Glycos_transf_2  92 pdpdwleklvealekdgadvvlgqrprif 120
                      p pd+l+ + +  ++ g  v+ g +   +
       CTQ28971.1  94 PYPDTLKSFSQLDKR-GCRVFSGLVKDPQ 121
                      *******99877777.6666666555555 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   1.5e-15   5.5e-12       5     211 ..       4     217 ..       2     237 .. 0.77

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 1.5e-15
  Glyco_tranf_2_3   5 avlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnl.gstgksralnealravksdlvllvDdD 97 
                      + l++tfn+  +l +++e++l+     + +v+v ++s+++t + +  +     d+rv v++ ++n  g +g+ ++ +  +++ +sd+v + DdD
       CTQ28971.1   4 TALIVTFNRLGKLKKTVEETLKL--EFTNIVIVNNGSTDGTQAWLSSI---V-DTRVIVLTLTENTgGAGGFKTGSQYICEQLASDWVFFYDDD 91 
                      679*******************5..44566666699****99988774...4.44777776665544*************************** PP

  Glyco_tranf_2_3  98 tvvePdtlkrllqffltpkvgavgtpvfllnrs....tl.....vsalgal.efaerhlrflaarralg.vltlnGsgslirrevlkeleg.ld 179
                      +   Pdtlk++ q+   ++++++ + v   +++    ++      + lg++ ++ +   +f  a+++   v t++  g++i r++l+   +  +
       CTQ28971.1  92 AYPYPDTLKSFSQLD-KRGCRVFSGLVKDPQGKpcpmNMpfsrvPTSLGDTvRYLRYPGEFIPAANRSMfVQTVSFVGMVIHRDLLATSLDyIR 184
                      **********99995.777887776555434333333224444355554443666666677788877773588888**********99886244 PP

  Glyco_tranf_2_3 180 p.lflltdDyelglrlrragfrtayvpgaavre 211
                      + lf+ +dD+  g+ l  ag ++ y p+++ ++
       CTQ28971.1 185 EqLFIYFDDLYFGYQLSLAGEQIMYSPELLFYH 217
                      477*************************99887 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   4.4e-10   1.6e-06       7      84 ..      16      94 ..      12     105 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 4.4e-10
  Glyco_tranf_2_4  7 LpeflahhlalgfdrilvydndstDgtrailkelpevk..llhvdksyederrqvellkallaryaeadwvlvvDaDEfl 84
                     L+++++  l+l f++i++++n+stDgt a+l++  + +  +l+ +++  + + +++   + + ++  +dwv++ D D + 
       CTQ28971.1 16 LKKTVEETLKLEFTNIVIVNNGSTDGTQAWLSSIVDTRviVLTLTENT-GGAGGFKTGSQYICEQLASDWVFFYDDDAYP 94
                     677888999************************877551155555544.467779999998888899********88655 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.8e-07    0.0013      29     103 ..      28     103 ..       6     108 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.8e-07
  Glyco_tranf_2_2  29 eielivvddgSsekfleevssiidlnllv.ylkdeddkayslaaarNrGaskaesdlvlFlDaDcfissDkfekil 103
                        ++++v++gS++ +   +ssi+d +  v  l ++   a +         ++  sd v+F D D +  +D ++   
       CTQ28971.1  28 FTNIVIVNNGSTDGTQAWLSSIVDTRVIVlTLTENTGGAGGFKTGSQYICEQLASDWVFFYDDDAYPYPDTLKSFS 103
                      35799**********************996666654446666666777788899****************998765 PP

>> Antimicrobial12  Pleurocidin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       2.9   1.1e+04      34      39 ..     167     172 ..     164     173 .. 0.56
   2 ?   10.5   0.4   0.00011      0.39      22      40 ..     276     294 ..     275     295 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.9
                      HHHHHH CS
  Antimicrobial12  34 ggkaIH 39 
                      +g +IH
       CTQ28971.1 167 VGMVIH 172
                      455666 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00011
                      X-HHHHHHHHHHHHHHHHH CS
  Antimicrobial12  22 aFlghlikGivHggkaIHg 40 
                      +++ ++++Gi Hg+k I g
       CTQ28971.1 276 SYMKFILRGISHGIKGISG 294
                      6899***********9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2523.40
//
Query:       CTQ28972.1  [L=384]
Description: UDP-galactopyranose mutase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-76  257.2   6.3    1.6e-76  256.6   6.3    1.2  1  GLF             UDP-galactopyranose mutase
      2e-17   63.2   0.2    4.7e-17   62.0   0.2    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    2.1e-06   27.3   0.0    2.6e-06   27.0   0.0    1.1  1  Amino_oxidase   Flavin containing amine oxidoreductase
    5.9e-06   26.3   0.0      1e-05   25.6   0.0    1.3  1  NAD_binding_9   FAD-NAD(P)-binding
    1.5e-05   24.8   0.3      3e-05   23.8   0.3    1.4  1  DAO             FAD dependent oxidoreductase
    1.7e-05   25.3   0.1    3.7e-05   24.2   0.1    1.6  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    6.4e-05   22.3   0.1    0.00013   21.3   0.0    1.5  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    0.00071   18.9   0.0     0.0011   18.3   0.0    1.3  1  FAD_binding_3   FAD binding domain
    0.00093   18.9   0.1     0.0019   17.8   0.1    1.5  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0018   17.9   0.1     0.0032   17.1   0.1    1.4  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
      0.002   17.5   0.0     0.0027   17.1   0.0    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
     0.0041   16.3   0.1     0.0059   15.7   0.1    1.2  1  FAD_binding_2   FAD binding domain
     0.0042   16.7   0.0     0.0068   16.0   0.0    1.3  1  DUF1188         Protein of unknown function (DUF1188)
  ------ inclusion threshold ------
       0.01   15.1   0.0      0.018   14.3   0.0    1.4  1  Thi4            Thi4 family
      0.012   15.6   0.0      0.018   15.0   0.0    1.3  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.059   12.1   0.2      0.092   11.4   0.2    1.2  1  HI0933_like     HI0933-like protein
        0.1   12.1   0.8       0.36   10.3   0.2    1.9  2  Epimerase       NAD dependent epimerase/dehydratase family
       0.13   11.4   1.4       0.23   10.5   0.1    2.0  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
       0.14   12.8   0.0       0.32   11.6   0.0    1.7  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> GLF  UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.6   6.3   1.7e-79   1.6e-76       1     204 []     150     349 ..     150     349 .. 0.97

  Alignments for each domain:
  == domain 1  score: 256.6 bits;  conditional E-value: 1.7e-79
                 HHTHHHHHHHHTSSGGGSBGGGGCGS-B-SSS--BS--SSEEEEBTTHHHHHHHHHTTSTTEEEESS--HHHHHHHHHHTTEEEEEE-S-HHHHTTTTT CS
         GLF   1 klfkgYtkKqWglkpeeldasvlkrvpvrlsyddrYfndkyqglPkeGYtklfekmldhenievrlntdffdvkeaeekeeakkvvytgpideyFdykl 99 
                 ++fkgYt KqWg++p+el+as+lkr+pvr++ydd+Yfn+k+qg+Pk GYt++++++l+heni+v l+ +f  +++    ++ ++v+y+gp+d++++y++
  CTQ28972.1 150 AFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCGYTQMIKSILNHENIKVDLQREFIVEER----THYDHVFYSGPLDAFYGYQY 244
                 59********************************************************************98877....5668**************** PP

                 S---EEEEEEEEEEESSS-SSSSSEEEESSTTSSSSEEEEGGGGCTCS.SSSEEEEEEEEEE.STTS.--EE--SHHHHHHHHHHHHHHHHCTTEEE-H CS
         GLF 100 geLeYrsldfeketldeekfqenavvnYpdeevpytrivEykhltkqk.skktvivreypkeaeegdepyYpinteenrelyekYkelakkeekvlfvG 197
                 g+L Yr+ldf+k t  + ++q++av+nY++ +vpytri+E+k++++++ ++ +v+++ey++++ee+d+pyYpi++  +++l+ekY +la++e++++fvG
  CTQ28972.1 245 GRLGYRTLDFKKFT-YQGDYQGCAVMNYCSVDVPYTRITEHKYFSPWEqHDGSVCYKEYSRACEENDIPYYPIRQMGEMALLEKYLSLAENETNITFVG 342
                 ***********999.789*****************************66************************************************** PP

                 HHHTTS- CS
         GLF 198 RLaeYkY 204
                 RL++Y+Y
  CTQ28972.1 343 RLGTYRY 349
                 ******9 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.2     5e-20   4.7e-17       1      66 [.       8      74 ..       8      76 .. 0.93

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 5e-20
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETT...CEECTS---EEETTHHHHCHHHHC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpg...vrvdygahifhgsgyypnvrrllr 66
                   IvGaG+sG+v+ + La++g++v+++++rd++GG+++++++ +   +++ yg+hifh+  +++ v+++++
     CTQ28972.1  8 IVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSEtnvMVHVYGPHIFHT--DNETVWNYVN 74
                   9***************************************544589999********..69****9987 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   2.8e-09   2.6e-06       2     218 ..      14     207 ..      13     222 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.8e-09
                    HHHHHHHHHHHTTEEEEEEESSSSSBTTS-EEEET..TEEEES.S--EEETTTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECC..TTEECH CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGRirtvrsd..Gyliel.Gamwftgagnpllellkelgledslslpdpgapkrvlskggref..pgdlsp 92 
                    +G +  rqL+++G++V ++  rd++GG  +  r++  ++ + + G+++f+ ++  +++++++    +  ++p  +  + + +++g++f  p +l+ 
     CTQ28972.1  14 SGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSetNVMVHVyGPHIFHTDNETVWNYVNK----HAEMMPYVN--RVKATVNGQVFslPINLHT 103
                    677788*****************************999999999*****************9....333344444..5555666887777777777 PP

                    HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTTTTCBHHHH CS
  Amino_oxidase  93 vpaewealleqgalsaellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdpselsakla 188
                    +++ + + ++           +++ r+ +++      d+   d  +++e  +++ ++e+ +    ++ i ++ ++  e+   ++ + p     ++ 
     CTQ28972.1 104 INQFFSKTCS-----------PDEARALIAEKG----DSTIADPQTFEEQALRFIGKELYEAFFKGYTIKQWGMQPSELPASILKRLP----VRFN 180
                    7777777777...........888888888888....777777778888888888887777666777777777777777777775544....7777 PP

                    TCCCCHHHHHTSCCCEETTHTHHHHHHHHH CS
  Amino_oxidase 189 lpllwelegfggslllprgGlsqlpealae 218
                    ++++++  +f+g    p+ G+ q+++++ +
     CTQ28972.1 181 YDDNYFNHKFQGM---PKCGYTQMIKSILN 207
                    7777777777766...66667777666655 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.1e-08     1e-05       2      78 ..       8      78 ..       7      97 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.1e-08
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsep.gagrvwrtdqseelllNvpasemslftddpptfaeWlrerga 78
                   ivGaG++G+ + ++L+++      ++++++d++ + g g  +++++se+    v++   ++f+ d++t +++++++++
     CTQ28972.1  8 IVGAGFSGAVIGRQLAEK-----GHQVHIIDQRDHiG-GNSYDARDSETNV-MVHVYGPHIFHTDNETVWNYVNKHAE 78
                   9***************99.....599******65537.9999999876644.478888999**************996 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.3   3.2e-08     3e-05       1      39 [.       5      44 ..       5      46 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.2e-08
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgr 39
                +++i+G+G  G+ + ++La++g  V +++++d +g g S  
  CTQ28972.1  5 KILIVGAGFSGAVIGRQLAEKGhqVHIIDQRDHIG-GNSYD 44
                59*******************99************.99975 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1     4e-08   3.7e-05       1      40 [.       5      45 ..       5      54 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 4e-08
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSH CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.rllDe 40
                k+++vG+G++g   +  lae g++V++++ +d++  + +D+
  CTQ28972.1  5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGgNSYDA 45
                79********************************9888886 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.4e-07   0.00013     141     184 ..       2      46 ..       1      54 [. 0.88
   2 ?   -3.3   0.0       4.3   4.1e+03      63      89 ..     198     223 ..     170     231 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.4e-07
                  -TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
  Pyr_redox_2 141 lpkrivvvGgGyiGvElAaalaklgkevtlveardrll.raldke 184
                  ++k+i++vG+G+ G ++  +la+ g++v+++++rd++  +++d +
   CTQ28972.1   2 KRKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGgNSYDAR 46 
                  5689********************************998777765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.3
                  HHHHCCCCHCCTCEEEEESCEEEEETE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  63 lnqgielllgeevvkidpgkkkvklek 89 
                  ++q i+ +l++e +k+d ++ ++ +e+
   CTQ28972.1 198 YTQMIKSILNHENIKVDLQR-EFIVEE 223
                  45667777777788887777.666643 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.2e-06    0.0011       3      34 ..       5      36 ..       3      46 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.2e-06
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   ++lIVGaG +G++ ++ L+e+G +v+++++r+
     CTQ28972.1  5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 36
                   689**************************987 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1     2e-06    0.0019       1      33 [.       6      38 ..       6      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2e-06
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsrrl 33
                i+i+GaG  G +++ +La++g++v++i++++++
  CTQ28972.1  6 ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38
                89**************************99864 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   3.4e-06    0.0032       2      33 ..       5      36 ..       4      38 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.4e-06
                    EEEEE--STTHHHHHHHHHHCTSEEEEE-S-H CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvDide 33
                    ki ++G+G+ G+v +  lae+gh+v ++D  +
      CTQ28972.1  5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 36
                    899**************************765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.9e-06    0.0027       2      38 ..       6      42 ..       5     109 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.9e-06
  FAD_oxidored  2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGll 38
                  +++vG+g +G +   + a++G +v ++++r+++GG++
    CTQ28972.1  6 ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS 42
                  89*********************************96 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   6.2e-06    0.0059       2      38 ..       6      42 ..       5      46 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.2e-06
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggat 38
                   ++++G+G++G + + ++ae+G++v ++++ +  gg++
     CTQ28972.1  6 ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS 42
                   79******************************99987 PP

>> DUF1188  Protein of unknown function (DUF1188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   7.2e-06    0.0068      42      77 ..       2      38 ..       1      41 [. 0.94

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.2e-06
                ..EEEEEES-CCCHHHHHHHHCCC.EEEEEEESSGGG CS
     DUF1188 42 eeknvlviGaYltGaaiakkLskk.eevtlvDiephl 77
                + k++l++Ga ++Ga+i ++L +k ++v ++D ++h+
  CTQ28972.1  2 KRKKILIVGAGFSGAVIGRQLAEKgHQVHIIDQRDHI 38
                6799****************************99997 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.9e-05     0.018      19      58 ..       5      43 ..       1      63 [. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
                EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTT CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvailersvspGGGaw 58
                 ++ivGaG sG   ++ la+k + +v i++++  +GG ++
  CTQ28972.1  5 KILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDHIGGNSY 43
                699******************.**************9765 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.9e-05     0.018       2      36 ..       6      40 ..       5      84 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseeale 36
                + ++GaG  Ga i  ++a++g++V+++d ++++  
  CTQ28972.1  6 ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40
                789*************************9887655 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   9.7e-05     0.092       2      36 ..       5      39 ..       4      41 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.7e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +++++G+G +G     ++a++g++V ++++ +++g
   CTQ28972.1  5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG 39
                 799***************************99887 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00038      0.36       1      32 [.       6      36 ..       6      52 .. 0.89
   2 ?   -0.6   0.0      0.81   7.7e+02     170     192 ..      54      76 ..      50      90 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00038
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-S CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrls 32
                il++Ga Gf G+ + ++l+ekg++v+ +d++ 
  CTQ28972.1  6 ILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRD 36
                789998.**********************984 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.81
                 SEEESTTS-TTSTTSHHHHHHHH CS
   Epimerase 170 fnlyGprngegevsrvipalirk 192
                  ++yGp+ ++++++ v+ ++ ++
  CTQ28972.1  54 VHVYGPHIFHTDNETVWNYVNKH 76 
                 699****9999999998877665 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00025      0.23     190     221 ..       2      31 ..       1      46 [. 0.85
   2 ?   -1.5   0.0       1.2   1.1e+03      69      95 ..      66      92 ..      60      96 .. 0.80
   3 ?   -3.7   0.0       5.3     5e+03      93     127 ..     176     210 ..     173     226 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00025
  K_oxygenase 190 akkriaVvGsGqSaaeifedllrrqkkvelkl 221
                  ++k+i++vG+G S+a i ++l+++ ++  +++
   CTQ28972.1   2 KRKKILIVGAGFSGAVIGRQLAEKGHQ--VHI 31 
                  689********************9984..444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.2
  K_oxygenase 69 pfsFlnYlkekgrLykFlnletflpsR 95
                 + +  nY++++ ++++++n+ + ++  
   CTQ28972.1 66 NETVWNYVNKHAEMMPYVNRVKATVNG 92
                 55778**************98887765 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 5.3
  K_oxygenase  93 psRkefed.YlrWvasqleeqvrfgeeveevepdee 127
                  p+R +++d Y +   + +++ + + + ++++  +e+
   CTQ28972.1 176 PVRFNYDDnYFNHKFQGMPK-CGYTQMIKSILNHEN 210
                  66777754488888888888.889888888887775 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00034      0.32       1      35 [.       5      36 ..       5      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00034
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESS CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrn 35
                   ki i+GaG  g+ + ++l+++g   h++ ++ +r+
     CTQ28972.1  5 KILIVGAGFSGAVIGRQLAEKG---HQVHIIDQRD 36
                   68899*****************...****998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 3177.19
//
Query:       CTQ28973.1  [L=631]
Description: WbbM protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-74  249.0   4.5    1.2e-73  247.8   4.5    1.6  1  DUF4422          Domain of unknown function (DUF4422)
    4.2e-43  147.7   2.4    8.4e-43  146.8   2.4    1.5  1  Glyco_transf_8   Glycosyl transferase family 8
    9.2e-06   25.3   0.1    2.5e-05   23.8   0.0    1.7  2  Glyco_transf_24  Glucosyltransferase 24
    0.00077   18.9   3.2      0.035   13.4   0.6    2.2  2  HlyE             Haemolysin E (HlyE)


Domain annotation for each model (and alignments):
>> DUF4422  Domain of unknown function (DUF4422)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.8   4.5   2.6e-77   1.2e-73       1     227 [.       6     244 ..       6     247 .. 0.95

  Alignments for each domain:
  == domain 1  score: 247.8 bits;  conditional E-value: 2.6e-77
     DUF4422   1 kIlvathkkyelpkneiylpiqvGaalkeeeklgllgDdtGdnISeknksycELTalYWawknlkdadyiGlvHYRRyfsfkkkkekkak........l 91 
                 kI++++hk++++ +  i+ p++vG+a++  ++ g+ gDdtGdnIS kn+ ycELTa+YW+wkn + ady+G++HYRR+++f++k++ +++        +
  CTQ28973.1   6 KIYTSHHKPSAFLNAAIIKPLHVGKANS-CNEIGCPGDDTGDNISFKNPFYCELTAHYWVWKNEELADYVGFMHYRRHLNFSEKQTFSEDtwgvvnhpC 103
                 8**************************9.799*******************************999*****************988855579*****99 PP

     DUF4422  92 lkeekkekkilseeeiekllkkydiilpkkrklkie...slyeqYkka..hhiedldllreiikekypeyleafekvlkkkslylfNmfimkkelfdeY 185
                 ++ee ++  +l+ee+i+++++ +di+lpkk+++++    ++y++Y++    hi+d++++ +i+++ ypey +a++++   ++ y++Nmf+m+k++f +Y
  CTQ28973.1 104 IDEEYEKIFGLNEETIQRCVEGIDILLPKKWSVTAAgskNNYDHYERGeyLHIRDYQAAIAIVEKLYPEYSTAIKTFNDASDGYYTNMFVMRKDIFVDY 202
                 9*******************************76655559999999766699*********************************************** PP

     DUF4422 186 cewlFdiLfelekridlskydayqkRvfGflsErLlnvylek 227
                 +ewlF+iL++le+ i++++y+a++kRv+G+++ErL+n+y+ k
  CTQ28973.1 203 SEWLFSILDNLEDAISMNNYNAQEKRVIGHIAERLFNIYIIK 244
                 ***************************************986 PP

>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.8   2.4   1.9e-46   8.4e-43       2     254 ..     280     546 ..     279     548 .. 0.89

  Alignments for each domain:
  == domain 1  score: 146.8 bits;  conditional E-value: 1.9e-46
  Glyco_transf_8   2 ialaldknYllgasvviksllknakepawfalnfhiltaeievenleklnklassykevlellesdkksledfesklklrspkylsllnylRlyl 96 
                     +++++d+nY++  +++i+s++++a++  ++++++++l+ ++   n+ +l +l+s   ++ +l  +d + + +    +   +  ++s  +y+Rl++
      CTQ28973.1 280 VVISFDDNYAISGGALINSIIRHADK--NKNYDIVVLENKVSYLNKTRLVNLTSAHPNI-SLRFFDVNAFTE---INGVHTRAHFSASTYARLFI 368
                     899**********************6..8**************************9777.999999999865...6******************* PP

  Glyco_transf_8  97 pelfpkldkilylDaDvvvqgdlseLwdldlkgkvlaaved..............krfkkylnksepliaenfkpeacyFnaGvllfdldewrke 177
                     p+lf  +dk++++D+D+vv+ dl eL+d++l+++++aav+d                   ++  +  +++ n++ +++yF aG+++f++++  +e
      CTQ28973.1 369 PQLFRRYDKVVFIDSDTVVKADLGELLDVPLGNNLVAAVKDivmegfvkfsamsaSDDGVMPAGEYLQKTLNMNNPDEYFQAGIIVFNVKQMVEE 463
                     ************************************************9998875222233334444566789999******************* PP

  Glyco_transf_8 178 nitetlikwlnlnekrtllklgdqdilnivfkgkvkeldkkynvlglgy..........eqskkskk..eitenaaviHyiGpaKPWld 254
                     n + +l+ +l+ ++      + dqdi+n vf+++v +l+ ++nv++ +               +++k   +++++++iHy G+ KPW+ 
      CTQ28973.1 464 NTFAELMRVLKAKKY----WFLDQDIMNKVFYSRVTFLPLEWNVYHGNGntddffpnlkF--ATYMKflAARKKPKMIHYAGENKPWNT 546
                     *********877766....789**********************998888******9552..4444311467***************86 PP

>> Glyco_transf_24  Glucosyltransferase 24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.8   8.1e+03       9      32 ..     231     254 ..     230     265 .. 0.76
   2 !   23.8   0.0   5.6e-09   2.5e-05      19     126 ..     295     405 ..     284     415 .. 0.76

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1.8
  Glyco_transf_24   9 Gklyerllkimilsvlkktkksvk 32 
                      G++ erl +i i+  +++ + +vk
       CTQ28973.1 231 GHIAERLFNIYIIKLQQDGELKVK 254
                      788899999999988888877776 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 5.6e-09
  Glyco_transf_24  19 milsvlkktkks..vkfwlienflspkfkellpklak.kygfeyelvtykwPkwlrkqk.ekqriiwgykilfldvlfPldldkvifvdadqvv 108
                      +i s++++++k+    + ++en +s   k+ l +l++ + ++++++ + +  + ++  +   +    +y  lf+  lf  + dkv+f+d+d vv
       CTQ28973.1 295 LINSIIRHADKNknYDIVVLENKVSYLNKTRLVNLTSaHPNISLRFFDVNAFTEINGVHtRAHFSASTYARLFIPQLFR-RYDKVVFIDSDTVV 387
                      67788888755422667889999999888877766541557788877766555555443034445678999*******6.68************ PP

  Glyco_transf_24 109 radlkelveldlegapyg 126
                      +adl el+++ l ++ ++
       CTQ28973.1 388 KADLGELLDVPLGNNLVA 405
                      **********99887665 PP

>> HlyE  Haemolysin E (HlyE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.6   7.9e-06     0.035      23     164 ..     154     297 ..     136     315 .. 0.77
   2 !    5.6   0.1    0.0018       8.2      54     102 ..     437     486 ..     432     493 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.9e-06
                 S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS....-TTTHHHHHHHH.....HHHHHHHHHH CS
        HlyE  23 vkfqqldeaideldeakldysqvakvklddlktllsdardkyfdavqtvfeWcvsitsllaifillid....dekkaeadkdilwnmt.ikvlddGekk 116
                 ++ + ++ ai  +++   +ys + k+  d      ++      d      eW  si + l+  i + +    +++   +  + l+n+  ik  +dGe k
  CTQ28973.1 154 LHIRDYQAAIAIVEKLYPEYSTAIKTFNDASDGYYTNMFVMRKDIFVDYSEWLFSILDNLEDAISMNNynaqEKRVIGHIAERLFNIYiIKLQQDGELK 252
                 566788899999999999999999988888888888888888888888889*999999999999887775656677789999999986267779***** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHH......HHH CS
        HlyE 117 lsealkllvlvqsktaavkklldsqlhditddfsekssygmqkaalks 164
                 ++e ++ +v+  +++ a + ++ds +  +   f     y++   al +
  CTQ28973.1 253 VKELQRTFVSNETFNGALNPVFDSAV-PVVISFD--DNYAISGGALIN 297
                 ************************98.4443343..345555555544 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHTS-TTTHHHHHHHH CS
        HlyE  54 ktllsdardkyfdavqtvfeWcvsi.tsllaifilliddekkaeadkdil 102
                 ktl+++  d+yf+a   vf+    + ++++a  + +++ +k    d+di+
  CTQ28973.1 437 KTLNMNNPDEYFQAGIIVFNVKQMVeENTFAELMRVLKAKKYWFLDQDIM 486
                 8******************9876551679999999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 5081.75
//
Query:       CTQ28974.1  [L=246]
Description: O-antigen export system ATP-binding protein RfbB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-17   62.6   0.1    2.5e-16   60.5   0.1    1.9  1  ABC_tran    ABC transporter
    0.00012   22.1   1.6      0.098   12.4   0.0    2.2  2  AAA_21      AAA domain, putative AbiEii toxin, Type IV TA sys
     0.0088   15.8   0.2      0.016   14.9   0.2    1.4  1  AAA_29      P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.025   14.5   4.3       0.87    9.5   0.2    2.2  2  NTPase_1    NTPase
      0.039   13.7   1.0      0.077   12.7   1.0    1.6  1  AAA_30      AAA domain
        0.1   11.4   0.0       0.18   10.5   0.0    1.3  1  ABC_ATPase  Predicted ATPase of the ABC class


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.1   8.2e-20   2.5e-16       2     135 ..      47     177 ..      46     179 .. 0.87

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 8.2e-20
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 ++vs+++ +ge va++G+nGaGKSt l l+ag  kpt+G+++ +             +  ++l+    + pelt ren             e ++++e+
  CTQ28974.1  47 EDVSFTVGKGEAVALIGRNGAGKSTSLGLVAGVIKPTKGTVTTE------------GRVASMLELGGGFHPELTGRENiylnatllglrrkEVQQRMER 133
                 79***************************************544............4455555555777777777777777788888887789999*** PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEp 135
                 +++  +l e+ d+++    + +S G+  ++    +   +p++l++DE 
  CTQ28974.1 134 IIEFSELGEFIDEPI----RVYSSGMLAKLGFSVISQVEPDILIIDEV 177
                 **************9....****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.5    0.0005       1.5       3      14 ..      60      71 ..      59      79 .. 0.90
   2 !   12.4   0.0   3.3e-05     0.098     182     299 ..     120     210 ..      89     214 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0005
      AAA_21  3 vliGpNgsGKSn 14
                +liG+Ng+GKS+
  CTQ28974.1 60 ALIGRNGAGKST 71
                79*********8 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 3.3e-05
      AAA_21 182 krllqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrlle 280
                 ++l+++ v ++ ++ ie s lge++                        + p+r  S+G++  l++ ++    +   ++l+iDE+ +  + +++++ ++
  CTQ28974.1 120 LGLRRKEVQQRMERIIEFSELGEFI------------------------DEPIRVYSSGMLAKLGFSVISQVEP---DILIIDEVLAVGDIAFQAKCIQ 191
                 4444555555555555555555554........................5578888*****9966555544444...**********9999******** PP

      AAA_21 281 llkelsrngaQviltTHSp 299
                  +++ +++g+ +++++H+ 
  CTQ28974.1 192 TIRDFKKRGVTILFVSHNM 210
                 *****************96 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   5.5e-06     0.016      17      40 ..      51      74 ..      42      88 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.5e-06
      AAA_29 17 ieidlkg.atlltGpsGsGKSTllD 40
                +++   g a+ l+G++G+GKST l 
  CTQ28974.1 51 FTVGK-GeAVALIGRNGAGKSTSLG 74
                55553.4599************775 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.7    0.0027       8.1       2      39 ..      59      92 ..      58     101 .. 0.84
   2 ?    9.5   0.2   0.00029      0.87      83     152 ..     158     228 ..     145     243 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0027
                EEEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE- CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkssgvkvgGfyteevr 39
                v++ G+ G GK+T +  v+ ++k    + +G +t e r
  CTQ28974.1 59 VALIGRNGAGKSTSLGLVAGVIK----PTKGTVTTEGR 92
                6788******************5....66777777766 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00029
                 HHHHHHHHHHHHHH-EEEE---...STTGGG-HHHHHHHHHHHTTTSEEEEE--SS-.-SHHHHHHHT-TT-EE CS
    NTPase_1  83 elalealrkalseadviviDEi...GkmElkskkfkeaveevLksekpvlavihrrk.dlalveeirerkdvkv 152
                 +l+ +++++   e+d+++iDE+   G + +  +k ++++++  k+++ +l+v h+ +  +++ +++   +++++
  CTQ28974.1 158 KLGFSVISQ--VEPDILIIDEVlavGDIAF-QAKCIQTIRDFKKRGVTILFVSHNMSdVEKICDRVIWIENHRL 228
                 566677765..69********644488765.5678999****************99865666666655555555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.0   2.6e-05     0.077      17      63 ..      55      98 ..      48     209 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.6e-05
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa 63
                +   ++l G+ G+GK+t+l+ ++ +++  +g+v   + +g++A  L+
  CTQ28974.1 55 KGEAVALIGRNGAGKSTSLGLVAGVIKPTKGTV---TTEGRVASMLE 98
                4457899*******************9996655...55666666666 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   6.1e-05      0.18     377     428 ..     190     239 ..     186     245 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.1e-05
                 HHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE-HHHHHHHHH CS
  ABC_ATPase 377 vdrvrelykklgvstilvvggsgdyldvAdtvilmeeykpkdvtekakeiae 428
                 ++ +r++ kk gv+++ v+  ++d  ++ d+vi +e+++ ++v   a++i+e
  CTQ28974.1 190 IQTIRDF-KKRGVTILFVSHNMSDVEKICDRVIWIENHRLREVG-SAERIIE 239
                 5678888.99********************************98.4555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1843.12
//
Query:       CTQ28975.1  [L=255]
Description: O-antigen export system permease protein RfbA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-16   58.8  30.7    4.7e-16   58.8  30.7    1.4  1  ABC2_membrane  ABC-2 type transporter
  ------ inclusion threshold ------
        5.6    7.1   9.4        8.1    6.5   0.2    3.4  4  DUF3185        Protein of unknown function (DUF3185)


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8  30.7   5.3e-20   4.7e-16       3     206 ..      12     213 ..      10     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 5.3e-20
  ABC2_membrane   3 ikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnr.......pgllffsvlflafsaltsvapvferergvlerelvsply 91 
                    + ++++++++ r+++++lg+lw++++pll+a+++ ++f  l        r       + l+ +++ +  f++ ++ ++++++ +  + +++v+p  
     CTQ28975.1  12 LVVITNKDLKVRYKSSMLGYLWSVANPLLFAMIYYFIFK-LVM------RvqipnytVFLITGLFPWQWFASSATNSLFSFIANAQIIKKTVFPR- 99 
                    6799**********************************9.222......23444457999999999999999999999999999999****9999. PP

  ABC2_membrane  92 slsayvlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm 185
                      s++ l++v++e ++ l+ + +++++ ++  g+++s   ++ ++l+++ +++++ ++++++s+l+  f+d   ++sl ++++++ +++++  d++
     CTQ28975.1 100 --SVIPLSNVMMEGLHFLCTIPVIVVFLFVY-GMTPSlsWVWGIPLIAIGQVIFTFGVSIIFSTLNLFFRDLERFVSLGIMLMFYCTPILYASDMI 192
                    ..9999*******877655544444444443.667766335999**************************************************** PP

  ABC2_membrane 186 pkwlqwiaylnPltyavealr 206
                    p+ + wi  +nPl+ ++ + r
     CTQ28975.1 193 PEKFSWIITYNPLASMILSWR 213
                    99***********99886655 PP

>> DUF3185  Protein of unknown function (DUF3185)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.31   2.8e+03      12      21 ..     123     132 ..     120     136 .. 0.77
   2 ?    4.3   1.0    0.0046        41       4      24 ..     139     159 ..     137     165 .. 0.87
   3 ?   -2.3   0.0      0.52   4.7e+03      10      19 ..     174     183 ..     172     205 .. 0.58
   4 ?    6.5   0.2   0.00091       8.1       6      26 ..     228     248 ..     226     255 .] 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.31
     DUF3185  12 ivLlvfGyna 21 
                 ++L+v+G++ 
  CTQ28975.1 123 VFLFVYGMTP 132
                 7899999875 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0046
     DUF3185   4 GiiLlvaGivLlvfGynasdS 24 
                 Gi L+++G v++ fG++   S
  CTQ28975.1 139 GIPLIAIGQVIFTFGVSIIFS 159
                 899************987665 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.52
     DUF3185  10 aGivLlvfGy 19 
                 +Gi+L+++  
  CTQ28975.1 174 LGIMLMFYCT 183
                 5666666654 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.00091
     DUF3185   6 iLlvaGivLlvfGynasdSlg 26 
                 iL + Gi+L v+G++ ++ l+
  CTQ28975.1 228 ILYFTGIILTVVGLSIFNKLK 248
                 789999999999998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1924.67
//
Query:       CTQ28976.1  [L=334]
Description: Uncharacterized 37.6 kDa protein in cld 5'region [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-59  200.7   0.0    4.9e-59  200.4   0.0    1.1  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    5.4e-58  196.3   0.1    6.2e-58  196.1   0.1    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.4e-21   76.8   0.0    1.9e-21   76.3   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    4.4e-17   62.1   0.0    5.2e-17   61.9   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
    2.3e-13   50.0   0.0    2.7e-12   46.4   0.0    2.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    2.8e-09   36.5   0.0      1e-05   24.9   0.0    2.3  2  NAD_binding_4    Male sterility protein
    7.5e-09   35.3   0.0    5.3e-08   32.5   0.0    2.0  2  adh_short        short chain dehydrogenase
    1.2e-06   28.5   0.0    3.2e-06   27.2   0.0    1.7  2  NAD_binding_10   NAD(P)H-binding
    0.00016   21.6   0.0    0.00042   20.3   0.0    1.6  1  KR               KR domain
    0.00063   19.4   0.1     0.0011   18.5   0.0    1.5  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
       0.17   11.7   0.0       0.39   10.6   0.0    1.7  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.4   0.0     3e-62   4.9e-59       1     331 [.       4     323 ..       4     324 .. 0.83

  Alignments for each domain:
  == domain 1  score: 200.4 bits;  conditional E-value: 3e-62
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG aGfiG ++a++Ll++g++v+gi++ ++ ++++  ++  + +   +++ +++ + Dl D++ + +l+a  q+d+v++LAAq  V++s+e+P 
     CTQ28976.1   4 LVTGAAGFIGFHIAQRLLNEGHDVVGIDNMNDYYDVSLKQARLD-RL--ASPAFHFQQLDLADREGMAKLFATEQFDRVIHLAAQAGVRYSLENPY 96 
                    9****************************998887665555443.22..4689******************************************* PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB.-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS-TT CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpq.tEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesprrget 191
                    ++a++n++G l++Le +r+++++   +++ aS+s vYG  ++ p+ tE+   +P s Yaa+K + + +++ y + yg++++  ++f  ++p   ++
     CTQ28976.1  97 AYADANLMGYLNILEGCRHTKVK---HLVYASSSSVYGLNRKMPFsTEDSVDHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFFTVYGPWGRPD 189
                    *******************9875...899***************8689999*****************************************9999 PP

                    SCCCHHHHHHHHHHTTS.-C-EECTTTT-EEEEEEHHHHHHHHHHHHHC..SS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH........... CS
  GDP_Man_Dehyd 192 fvtrkitravarialgk.qevlylGnldakRdwghvkDyveamwlmlqq..dkpedyviatgethsvrefvelaflelgktiewegkgeeevgrak 284
                    +   k+t+a+    +gk  +v+++G++  kRd+++++D+vea++++     + + d+ +++    +    +   + ++g++     + ++ + + +
     CTQ28976.1 190 MALFKFTKAML---EGKsIDVYNYGKM--KRDFTYIDDIVEAVVRVQDVipQANADWTVESASPATS--SAPYRVYNIGNSSPV--ELMDYITALE 276
                    88888887765...5653578888877..7************9984432112223333333333322..333344444443332..3345566778 PP

                    .TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHHH CS
  GDP_Man_Dehyd 285 esgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvre 331
                    e    + + ++ + +pg+v  + +d++ +   +g+kp++s++e+v++
     CTQ28976.1 277 EALGMEAKKNMMPIQPGDVLDTSADTQPLYDLVGFKPQTSVKEGVKN 323
                    888889999***********************************986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   0.1   3.8e-61   6.2e-58       2     227 ..       4     232 ..       3     261 .. 0.92

  Alignments for each domain:
  == domain 1  score: 196.1 bits;  conditional E-value: 3.8e-61
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiekn 91 
                 lVtGa+GfiG +++++ll++g++v+g+d+ ++    ++++           ++ +ldl dr+ +++lf++eq+d vihlAa++gv+ s e+p +++++n
  CTQ28976.1   4 LVTGAAGFIGFHIAQRLLNEGHDVVGIDNMNDYYDVSLKQARldrlaspafHFQQLDLADREGMAKLFATEQFDRVIHLAAQAGVRYSLENPYAYADAN 102
                 8*****************************9998888777778999***************************************************** PP

                 THHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSS.BSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTSTTSHHHH CS
   Epimerase  92 lqgtlnlleaarkagvkrllflsSsevYGkdaeqp.keettltgpl.kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegevsrvipa 188
                 l+g ln+le +r ++vk l+++sSs+vYG + ++p  +e++    + +p s Yaa+K a e +++ y + yg++++ lr f++yGp    g+++  +++
  CTQ28976.1 103 LMGYLNILEGCRHTKVKHLVYASSSSVYGLNRKMPfSTEDS----VdHPVSLYAATKKANELMAHTYSHLYGIPTTGLRFFTVYGPW---GRPDMALFK 194
                 *****************************999999555555....55****************************************...9******** PP

                 HHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHH CS
   Epimerase 189 lirkilegkqevtllgdgtalRdflyveDvaeaillvle 227
                 + + +legk ++ +++ g+ +Rdf y++D++ea+++v +
  CTQ28976.1 195 FTKAMLEGK-SIDVYNYGKMKRDFTYIDDIVEAVVRVQD 232
                 *********.*************************9865 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   1.1e-24   1.9e-21       1     275 [.       4     286 ..       4     290 .. 0.79

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 1.1e-24
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD.......lrespelleelskvnvkkviegDvtdkdklee..alegvdvvihlaslvdvag.kltedeim 89 
                 +vtG+aGF+G ++ ++L+++++  +v  +D       +  ++  l++l +   + + + D+ d + + +  a+e+ d vihla+   v+    +   + 
  CTQ28976.1   4 LVTGAAGFIGFHIAQRLLNEGH--DVVGIDnmndyydVSLKQARLDRLASPAFH-FQQLDLADREGMAKlfATEQFDRVIHLAAQAGVRYsLENPYAYA 99 
                 69******************96..555555444444477777777777777766.9***********987789************99998355667899 PP

   3Beta_HSD  90 kvnvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdk. 187
                 ++n+ G  n+le c+++ v+ lvY Ss +v g   ++ ++     ++     +++ y+ +K+  E +        l +   + T  LR  ++yG+  + 
  CTQ28976.1 100 DANLMGYLNILEGCRHTKVKHLVYASSSSVYGL-NRKMPFS----TEDSVDHPVSLYAATKKANELMAHTYSH--LYG---IPTTGLRFFTVYGPWGRp 188
                 ********************************9.4677777....3444566899******988866544433..444...69***********96441 PP

   3Beta_HSD 188 ..llvpllkqlaklglalfkigdeevlsdrvYvgNvawahilAaralqdpkk..........kssvagqayfisddsPvesyddfnltllkelglelks 274
                    l+++  +++  g+++  +   +++ d++Y + ++ a +     + + +           +ss+  ++y i + sPve   d+ + l ++lg+e k+
  CTQ28976.1 189 dmALFKF-TKAMLEGKSIDVYNYGKMKRDFTYIDDIVEAVVRVQDVIPQANAdwtvesaspaTSSAPYRVYNIGNSSPVE-LMDYITALEEALGMEAKK 285
                 1134444.45555566777788888889***********98776666555447888888887788888999999******.***************998 PP

   3Beta_HSD 275 v 275
                  
  CTQ28976.1 286 N 286
                 5 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   3.2e-20   5.2e-17       1     177 [.       1     209 [.       1     283 [. 0.85

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 3.2e-20
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT........................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre........................eldltdaeavaellkeakpdvvvnaAAytavDkaEseee 72 
                    mk lvtGa G +G ++a++l +eg++v+++++                         +ldl+d+e +a+l++  + d v+++AA   v    +++ 
     CTQ28976.1   1 MKFLVTGAAGFIGFHIAQRLLNEGHDVVGIDNMndyydvslkqarldrlaspafhfqQLDLADREGMAKLFATEQFDRVIHLAAQAGVRYSLENPY 96 
                    899***************************8888************************************************************** PP

                    HHHHHHTHHHHHHHHHHHHCT-.EEEEEEEGGGS-S-TTS-B-TTS--.--SSHHHHHHHHHHHHHHHH-SSEEE....EEE-SEESS..SSS-HH CS
  RmlD_sub_bind  73 aayavnaeavealAeaaaavga.lLihvStDyVFdGekkrpYeeddet.sPlnvYGrtKlaGEqavlaagkkali....vRtswvyge..kgknfv 160
                    a + +n  +  ++ e ++++++ +L++ S+  V+  ++k+p++++d + +P+++Y++tK a E +   +++ + i    +R+  vyg   +    +
     CTQ28976.1  97 AYADANLMGYLNILEGCRHTKVkHLVYASSSSVYGLNRKMPFSTEDSVdHPVSLYAATKKANELMAHTYSHLYGIpttgLRFFTVYGPwgRPDMAL 192
                    ********************9856*****************998887638*************998886554444333488888888733333455 PP

                    HHHHHHHHH-SEEEEES CS
  RmlD_sub_bind 161 ktmlrlakereelkvva 177
                    +++ +   e ++++v +
     CTQ28976.1 193 FKFTKAMLEGKSIDVYN 209
                    66666666666666665 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   1.6e-15   2.7e-12       2     214 ..       4     228 ..       3     290 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 1.6e-15
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHHH CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlvee 95 
                      lvtGa+G iG ++ +++l++    + + + +++   ++++   ++l++  ++++      d++d+e ++k++ + + d v+h AA   V    e
       CTQ28976.1   4 LVTGAAGFIGFHIAQRLLNEGHDVVGIDNMNDYYDVSLKQARLDRLASPAFHFQ----QLDLADREGMAKLFATEQFDRVIHLAAQAGVRYSLE 93 
                      8****************************************8899999999888....78********************************** PP

                      SHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE...............GGGSS--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTG CS
  Polysacc_synt_2  96 npleaiktNvlgtenvieaaieagvkkvvliSt...............DKAvnPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlgS 174
                      np+   + N +g  n++e + +++vk++v+ S+               D   +P++++ atK++ e+++ ++++         +  Rf  V g 
       CTQ28976.1  94 NPYAYADANLMGYLNILEGCRHTKVKHLVYASSssvyglnrkmpfsteDSVDHPVSLYAATKKANELMAHTYSHLY---GIPTTGLRFFTVYGP 184
                      *****************************97642222222222222234444689999999999998888887776...444555566666666 PP

                      TTS...SHHHHHHHHHTTSSEEES-T.T-EEEEE-HHHHHHHHH CS
  Polysacc_synt_2 175 rGS...viplFkkqikeggpvtvTdp.emtRyfmtieeavqLvl 214
                       G     + +F+k + eg+++ v +  +m R f  i++ v+ v+
       CTQ28976.1 185 WGRpdmALFKFTKAMLEGKSIDVYNYgKMKRDFTYIDDIVEAVV 228
                      55322244556666666777766553266666666666666555 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00028      0.46       1      23 [.       5      27 ..       5      33 .. 0.89
   2 !   24.9   0.0   6.3e-09     1e-05      85     208 ..      73     183 ..      55     227 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00028
                   EE-TTSHHHHHHHHHHHHHS-.T CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpev 23
                   +TGa GF+G ++ ++LL++  +v
     CTQ28976.1  5 VTGAAGFIGFHIAQRLLNEGHDV 27
                   7****************998765 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 6.3e-09
                    HHH--EEEE--SS-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHH CS
  NAD_binding_4  85 aeevdviihsaAtvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYe 177
                    +e+ d +ih aA+  + +++++     ++N++G  ++le ++ +k + +l++ S++ v+g +++               +   ++++ +     Y 
     CTQ28976.1  73 TEQFDRVIHLAAQAGVRYSLENpyaYADANLMGYLNILEGCRHTKVK-HLVYASSSSVYGLNRK---------------MPFSTEDSVDHPVSLYA 152
                    789**********999999998665779**************99998.9999999777777773...............33345555555566799 PP

                    HHHHHHHHHHHHHHHHH---EEEEEE-EEE- CS
  NAD_binding_4 178 qsKalaEklvrearrrsglpvvivRpsiitg 208
                     +K + E + +++++  g+p++ +R  +++g
     CTQ28976.1 153 ATKKANELMAHTYSHLYGIPTTGLRFFTVYG 183
                    9999999999999999999998888777766 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   3.3e-11   5.3e-08       4     116 ..       4     110 ..       2     134 .. 0.88
   2 ?    0.1   0.0      0.29   4.7e+02     146     165 ..     148     167 ..     139     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.3e-11
                 EEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT...TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   4 lvtGassGIGraiakelakeGakvvvvdrseekleevakelkee...gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 lvtGa++ IG  ia++l++eG +vv +d+ ++     +k+ + +   +  +++ q+D++dre + +l+++  ++++++  L + AG+       ++s e
  CTQ28976.1   4 LVTGAAGFIGFHIAQRLLNEGHDVVGIDNMNDYYDVSLKQARLDrlaSPAFHFQQLDLADREGMAKLFAT--EQFDRVIHLAAQAGV-------RYSLE 93 
                 8*******************************998888887765668999*****************965..7**************.......67777 PP

                 HHHHHHHHHTHHHHHHH CS
   adh_short 100 ewervievNltgvfllt 116
                 +  ++ + Nl+g++++ 
  CTQ28976.1  94 NPYAYADANLMGYLNIL 110
                 77788888888887765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.29
                 BHHHHHHHHHHHHHHHHHHH CS
   adh_short 146 vaaYsAsKaavagltrslak 165
                 v+ Y+A+K a + ++++ ++
  CTQ28976.1 148 VSLYAATKKANELMAHTYSH 167
                 689*******9999888766 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.9e-09   3.2e-06       1     131 [.       7     161 ..       7     177 .. 0.71
   2 ?   -3.1   0.0       3.8   6.2e+03      55     139 ..     224     242 ..     210     253 .. 0.53

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.9e-09
                     TTTSHHHHHHHHHHHHC-T-EEEEEETT..........HHHCHHHHCTTTCEEEE--TT-CCHHHHHHT..T-SEEEES---TCC.....HHHH. CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRn..........peklaeleaeeglevvegdvtdvedlaealk..gadaVvsalggggk.....deeg. 77 
                     GA G +G +++++ll++g h+v+ +  n          +++l++l+ +++ +  ++d+ d e +a+ ++  + d V+  +++ g      +    
      CTQ28976.1   7 GAAGFIGFHIAQRLLNEG-HDVVGI-DNmndyydvslkQARLDRLA-SPAFHFQQLDLADREGMAKLFAteQFDRVIHLAAQAGVrysleN--Py 96 
                     9****************5.**9876.43334665555566777775.799****************9964477888877765555466540..14 PP

                     .........HHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHH...CCHHHHHHHHHHHHHH CS
  NAD_binding_10  78 .........aknivdaakeagvkRfvlvsaigvgdevpgefgewnke...llkaylaakraaeell 131
                                ni++ ++ ++vk++v+ s+  v+   +++ +  +++      + +aa ++a el+
      CTQ28976.1  97 ayadanlmgYLNILEGCRHTKVKHLVYASSSSVYG-LNRKMPFSTEDsvdHPVSLYAATKKANELM 161
                     555666689**********************9996.333333333321113444556666665555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.8
                     HHHHTT-SEEEES---TCCHHHHHHHHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEE CS
  NAD_binding_10  55 aealkgadaVvsalggggkdeegaknivdaakeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwT 139
                      ea+                                                                   +  +++ + + dwT
      CTQ28976.1 224 VEAVV------------------------------------------------------------------RVQDVIPQANADWT 242
                     33333..................................................................33333333333443 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.6e-07   0.00042       3     142 ..       3     131 ..       2     144 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.6e-07
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS...--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsa.aadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 +l+tG++G +G ++a+ l+++g   + +   +     + ++a++++l++     ++ ++D++d++ +++l+++ +        vih A  +      + 
  CTQ28976.1   3 FLVTGAAGFIGFHIAQRLLNEGHDVVGIDNMNDyYDVSLKQARLDRLAS--PAFHFQQLDLADREGMAKLFATEQ-----FDRVIHLAAQAG----VRY 90 
                 69********************999888777742334445556666665..578999**************9876.....566999997665....456 PP

                 -HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH- CS
          KR 101 taedleqvlapKvkGawnLhelledesldffvlfSSiagllg 142
                 + e+  +   + + G  n+ e +++++++++v+ SS + ++g
  CTQ28976.1  91 SLENPYAYADANLMGYLNILEGCRHTKVKHLVYASSSS-VYG 131
                 77777888899999***************999888865.455 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   7.1e-07    0.0011       1      88 [.       7      97 ..       7     111 .. 0.79
   2 ?   -4.1   0.0       5.6   9.1e+03     140     154 ..     150     164 ..     143     170 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 7.1e-07
                  TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHH.HHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GG CS
  adh_short_C2  1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveel.aeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfl 88
                  Gaa  IG++iA++l +eG +vv  d  ++  + +++++  ++l +  +   ++D +d+e +++l+++  e+f+++  l   ag+  +l++p++
    CTQ28976.1  7 GAAGFIGFHIAQRLLNEGHDVVGIDNMNDYyDVSLKQArLDRLASPaFhfQQLDLADREGMAKLFAT--EQFDRVIHLAAQAGVRYSLENPYA 97
                  88899********************99998644443331445555543669**************87..999999999999998877777665 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 5.6
                   HHHHHHHHHHHHHHH CS
  adh_short_C2 140 aygaaKaalealtry 154
                    y+a+K a e ++++
    CTQ28976.1 150 LYAATKKANELMAHT 164
                   566666666655555 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00024      0.39       4      43 ..       5      45 ..       2      86 .. 0.79
   2 ?   -3.2   0.0       4.2   6.8e+03      61      84 ..     221     244 ..     200     247 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00024
                EE--.SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHH CS
     3HCDH_N  4 viGa.GtmGagiaavfasagleVvlvdiseealekalekie 43
                v Ga G +G  ia+ ++++g++Vv +d  ++  + +l++++
  CTQ28976.1  5 VTGAaGFIGFHIAQRLLNEGHDVVGIDNMNDYYDVSLKQAR 45
                55655**********************99988777766655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.2
                 CCCHHCEEEES-HHHHHC-SEEEE CS
     3HCDH_N  61 eaalarisfttdleeavdadlviE 84 
                 +++++ +   +d+   ++ad+ +E
  CTQ28976.1 221 DDIVEAVVRVQDVIPQANADWTVE 244
                 344444444444444445666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2446.79
//
Query:       CTQ28977.1  [L=388]
Description: UDP-glucose 6-dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-34  118.1   0.2    5.3e-34  117.4   0.2    1.4  1  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
    1.6e-26   92.3   0.0    3.2e-26   91.4   0.0    1.5  1  UDPG_MGDP_dh     UDP-glucose/GDP-mannose dehydrogenase family
    2.5e-09   37.5   1.1    6.6e-07   29.7   0.1    2.6  2  UDPG_MGDP_dh_C   UDP-glucose/GDP-mannose dehydrogenase family
    0.00021   21.3   0.2    0.00062   19.7   0.0    1.9  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
     0.0037   17.3   0.9     0.0093   16.1   0.9    1.7  1  Ldh_1_N          lactate/malate dehydrogenase, NAD binding do
     0.0044   16.6   0.7      0.051   13.1   0.1    2.5  2  Glyco_hydro_4    Family 4 glycosyl hydrolase
     0.0081   15.6   0.4        2.3    7.5   0.0    2.9  3  ZnuA             Zinc-uptake complex component A periplasmic
  ------ inclusion threshold ------
      0.016   14.8   0.0      0.031   13.9   0.0    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA
      0.019   14.9   0.1      0.036   14.0   0.1    1.5  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
      0.025   14.3   0.3      0.054   13.2   0.1    1.6  2  Methyltransf_16  Lysine methyltransferase
      0.033   13.6   0.4       0.64    9.4   0.0    2.4  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.035   13.7   0.1      0.072   12.7   0.1    1.5  1  DUF2204          Nucleotidyl transferase of unknown function 
       0.04   14.5   0.2        1.1    9.9   0.0    3.1  3  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.099   13.1   0.1        2.8    8.5   0.0    2.7  2  CoA_binding_2    CoA binding domain


Domain annotation for each model (and alignments):
>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.2   4.1e-37   5.3e-34       1     181 [.       1     168 [.       1     176 [. 0.91

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 4.1e-37
                     SEEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B-TTTTCB CS
  UDPG_MGDP_dh_N   1 mkisviGlGYvGlvtaavlaeighevigvDideekvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaVgTPskkkgkaa 95 
                     mki++ G+GYvGl  ++++a+  hev+ +Di ++kvd+ln++ +pi++++++e+++++    ++++ttd + a ++ad ++ia +T  + k +  
      CTQ28977.1   1 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKP--LNFRATTDKHDAYRNADYVIIATPTDYDPKTNYF 92 
                     89***************9997.69*******************************9999..7************************999999999 PP

                     -THHHHHHHHHHHHHHHCEEEEEE-S---TTHHHHCHHHHHHHHCSS-TTCEEEEE------TTSHHHHHHS-S-EEEEESSCHHH CS
  UDPG_MGDP_dh_N  96 DlkyvesaarsiaealkkgkvvvvkSTvpvgtaeelvkkileeaskkkgvdfdvvsnPEflregsavkdllnpdrvviGveekkae 181
                     +++ ve+++r++ e ++ + v+++kST+pvg ++++ +++            +v+ +PEflreg a++d l+p r+viG+++ +ae
      CTQ28977.1  93 NTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERL----GID-----NVIFSPEFLREGRALYDNLHPSRIVIGERSARAE 168
                     ************87.68899***********999554333....332.....699*************************999988 PP

>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   2.5e-29   3.2e-26       2      93 ..     192     281 ..     191     282 .. 0.96

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 2.5e-29
  UDPG_MGDP_dh   2 tAEliKlaaNaflatkIsfiNelanlcealgidveeVieavgldprigpkflkpglGvGGsclpkDvkaLvalaeelgleaelleavrevNe 93 
                   +AE+iKl+aN++la++++++Nel  ++e+ g++ +++ie+v+ldprig+++ +p++G+GG+clpkD+k+L+a+ e+  ++ +++ a+++ N+
    CTQ28977.1 192 EAEAIKLFANTYLALRVAYFNELDSYAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYES--VPNNIIAAIVDANR 281
                   8***********************************************************************9977..69999999999996 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2     0.012        15      36      77 ..      46      84 ..      24     109 .. 0.66
   2 !   29.7   0.1   5.1e-10   6.6e-07       2      81 ..     301     374 ..     300     384 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.012
                    E-SSTHHCCCCHHGG.BTCCEEES-CHHHHTT-SEEEE-S--G CS
  UDPG_MGDP_dh_C 36 yDPkvkeeaveaele.ekgvevvdsleealkgadaiviltehd 77
                    +D  ++e  +    e   + + +++  +a ++ad ++i+t+ d
      CTQ28977.1 46 VDKEIQEYLA----EkPLNFRATTDKHDAYRNADYVIIATPTD 84
                    3333333333....243477888899**************975 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 5.1e-10
                     EE-SSSSTT-S--TT-HHHHHHHHHHHCTSEEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE-S--GGGGG CS
  UDPG_MGDP_dh_C   2 ilGlafKkdtdDlReSpaldiieeLleegaevkiyDPkvkeeaveaeleekgvevvdsleealkgadaiviltehdefke 81 
                     ++ l +K ++d++R S++  i+++++++g+ v iy+P+++e++        + +vv +l+   ++ad+i+     +e+ +
      CTQ28977.1 301 VYRLIMKSGSDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFF------NSRVVRDLDAFKQEADVIISNRMAEELAD 374
                     8899************************************98864......6799***************9998888877 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.8e-07   0.00062       1      99 [.       2      94 ..       2     122 .. 0.80
   2 ?   -2.2   0.0       2.6   3.3e+03      18      52 ..     325     359 ..     319     380 .. 0.53

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.8e-07
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfae 99
                k+++ G+G +G +   ++a +++eVv +di +++++  ++ki+  ++k      ++e  +e+ l+   +t++ +++++ad+vi a + +++ K++ f++
  CTQ28977.1  2 KITISGTGYVGLSNGVLIA-QNHEVVALDIVQAKVDMLNQKISPIVDKE-----IQEYLAEKPLNFRATTDKHDAYRNADYVIIATPTDYDPKTNYFNT 94
                68999*******9887766.579********************977776.....45455556666555555555555******************9975 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.6
                 HHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTT CS
     3HCDH_N  18 fasagleVvlvdiseealekalekieksleklvek 52 
                 + ++g++V +++   +  e  ++++ + l+ ++++
  CTQ28977.1 325 IKAKGIPVIIYEPVMQEDEFFNSRVVRDLDAFKQE 359
                 55566666666665554444444444444444433 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.9   7.2e-06    0.0093       1      80 [.       1      84 [.       1     124 [. 0.72

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.2e-06
                EEEEEETTTSHHHHHHHHHHHHT.TSSSEEEEE-SSHHHHHH.....HHHHHHHCHCCSTS-EEEEESSGGGGTTESEEEE--S-S CS
     Ldh_1_N  1 vkvavvGaaGgiGqslalllank.kladelaLlDiakekleG.....valdlshistflsvkvkvsekeeealkdadvvvitagvp 80
                +k+++ G+ G +G s  +l+a++ +++  l ++ ++ ++l+      v  ++++  +  + + +++ ++++a ++ad+v+i     
  CTQ28977.1  1 MKITISGT-GYVGLSNGVLIAQNhEVVA-LDIVQAKVDMLNQkispiVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVIIATPTD 84
                69******.**************54444.77766665544440001155788899999999999999*************987655 PP

>> Glyco_hydro_4  Family 4 glycosyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1     4e-05     0.051       2      81 ..       3      81 ..       2      91 .. 0.62
   2 ?    0.9   0.0      0.22   2.8e+02     126     146 ..      99     120 ..      90     131 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4e-05
                   EEEETTTSSSHHHHHHHHHHTTTTCTEEEEEEE-SSHHHHHHHHHHHHHHHHH..CTTTCEEEEESSHHHHHTT-SEEEE-- CS
  Glyco_hydro_4  2 iviiGgGStifaklllgdlkkteelsvselaLvDideerldaiqtlakklvee..agadlkieattdrkealkdadfVitai 81
                   i+i G G    ++ +l  + +++e+   ++    +d    ++i  +++k ++e  a  +l+++attd+++a ++ad+Vi+a 
     CTQ28977.1  3 ITISGTGYVGLSNGVL--IAQNHEVVALDIVQAKVDMLN-QKISPIVDKEIQEylAEKPLNFRATTDKHDAYRNADYVIIAT 81
                   6666666666665554..344444444444444444433.34555555555552235689*******************975 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
                    HHHHHHHHH-TTSEEE.E-SSS CS
  Glyco_hydro_4 126 eIakdieelcPdawvl.nytNP 146
                     +++d++e+ P+a ++ + t P
     CTQ28977.1  99 AVIRDVTEINPNAVMIiKSTIP 120
                    5899*********986245555 PP

>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.016        20     125     232 ..      32     142 ..      27     153 .. 0.78
   2 ?   -1.8   0.0       1.3   1.7e+03     190     232 ..     174     216 ..     158     225 .. 0.64
   3 !    7.5   0.0    0.0018       2.3     183     210 ..     310     341 ..     290     355 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHH.HHHHHHHHHTTSSGTEGEEEESSSTTHHHHHHTT-EEEEEESSSSS.....HHHHHHHHHHHHHTT-SEEEEETTS.-THHHHHH CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
        ZnuA 125 eanaaayiekLee.ldaeireelaeipeekrklvtthdafgylarayglevagiagiste.....aaqiaalieeikeagvkaifvepla.spklaetl 216
                 +a+ + +++k++  +d+ei+e lae p + r    +hda++    +y +    +   +++      ++++a+i+ + e + +a+++ +++ +   ++++
  CTQ28977.1  32 QAKVDMLNQKISPiVDKEIQEYLAEKPLNFRATTDKHDAYRNA--DYVIIATPT-DYDPKtnyfnTSTVEAVIRDVTEINPNAVMIIKSTiPVGFTRDI 127
                 66667777777652699*******9999998888999998877..787776644.4444466********************99999955488899999 PP

                 HHHHT-EEEEE-STSS CS
                 xxxxxxxxxxxxxxxx RF
        ZnuA 217 aeeagvkvatlyslds 232
                 +e+ g+  + + + + 
  CTQ28977.1 128 KERLGIDNVIFSP-EF 142
                 9999999877766.55 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
                 HHHHHHHTT-SEEEEETTS-THHHHHHHHHH.T-EEEEE-STSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
        ZnuA 190 lieeikeagvkaifveplaspklaetlaeea.gvkvatlyslds 232
                 l+e + +++++++f++++ + ++++  a+ +   +va ++ lds
  CTQ28977.1 174 LKEGAIKQDIPTLFTDST-EAEAIKLFANTYlALRVAYFNELDS 216
                 455567888888888654.4445555555554566666666555 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0018
                 S....HHHHHHHHHHHHHTT-SEEEEETTS-T CS
                 x....xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ZnuA 183 e....aaqiaalieeikeagvkaifveplasp 210
                 +    a+ i+ + ++ik++g+++i++ep++++
  CTQ28977.1 310 SdnfrASSIQGIMKRIKAKGIPVIIYEPVMQE 341
                 14588999********************8754 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.4e-05     0.031       1      78 [.       3      83 ..       3      90 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETT.CEEEEEECEEECCH..SCCCCS-ESEEEE-SSG CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseg.geeilrppealsae..ekselepidlvivtvKa 78
                i+i G+G +G   ++ +a+ +++v+ ++  + +++ l+++ + + +++ +e  +++p +++a+  +    +++d+vi+++++
  CTQ28977.1  3 ITISGTGYVGLSNGVLIAQ-NHEVVALDIVQaKVDMLNQKISPIVDKEiQEYLAEKPLNFRATtdKHDAYRNADYVIIATPT 83
                899**************66.9999999999999***************99999999999999988778889********986 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.8e-05     0.036       1      81 [.       2      85 ..       2     118 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
                    -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHH......SSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHH CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeinee......henvkyLpgiklpenlvattdlaealkgadiivlvvPsqa 81
                    ki++ G+G  G +   ++a+n  ev+     ++ ++ +n++      +e ++yL +   p n +attd ++a ++ad+++++ P+ +
      CTQ28977.1  2 KITISGTGYVGLSNGVLIAQNH-EVVALDIVQAKVDMLNQKispivdKEIQEYLAE--KPLNFRATTDKHDAYRNADYVIIATPTDY 85
                    7999999999999988888876.777777777777777764222222677889986..6779**********************975 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   4.2e-05     0.054      55     158 ..       6     116 ..       5     121 .. 0.76
   2 ?   -3.2   0.0       4.5   5.8e+03     127     148 ..     360     381 ..     359     383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.2e-05
  Methyltransf_16  55 sGtGlvGlavaell.peakviltDlee.llellkknie.lnknalkskvkvevLdWgeeleedllekeevDlilaaDcv.Yleds....lelLv 140
                      sGtG vGl+   l+ ++ +v+  D+ +  +++l++ i  + ++ +++  + ++L+      ++  + ++ D++++a  + Y+ ++     ++ +
       CTQ28977.1   6 SGTGYVGLSNGVLIaQNHEVVALDIVQaKVDMLNQKISpIVDKEIQEYLAEKPLNFRATT-DKHDAYRNADYVIIATPTdYDPKTnyfnTSTVE 98 
                      9************76999999999987589*******83234499***********8866.777778899**9988655354443221145677 PP

  Methyltransf_16 141 kvLkellkkeskvlvayk 158
                      +v++++++ +++ ++ +k
       CTQ28977.1  99 AVIRDVTEINPNAVMIIK 116
                      888888888887666555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.5
  Methyltransf_16 127 aDcvYledslelLvkvLkellk 148
                      aD++  + + e L++v++++ +
       CTQ28977.1 360 ADVIISNRMAEELADVVDKVYT 381
                      7999999999999999988865 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.11   1.4e+02      75     117 ..      56     100 ..      31     109 .. 0.70
   2 ?    9.4   0.0    0.0005      0.64      51      97 ..     321     365 ..     319     373 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.11
                   HHHHTCEEC.SHHHHHHH-SEEEE-S--STT.TTTSBSHHHHHCS CS
  2-Hacid_dh_C  75 eeelgvelv.sleellaesDivslhlpltpe.trhlinaeelakm 117
                   e+ l+++ + + +++++++D+v++++p   +  ++ +n ++ +++
    CTQ28977.1  56 EKPLNFRATtDKHDAYRNADYVIIATPTDYDpKTNYFNTSTVEAV 100
                   55566644448999************9654313456666666655 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0005
                   HHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC.SHHHHHHH-SEEEE CS
  2-Hacid_dh_C  51 vakrlkafgmkviaydrskkkeeeeeelgvelv.sleellaesDivsl 97 
                   ++kr+ka g+ vi+y++  +++e +   + ++v +l+++ +e+D+++ 
    CTQ28977.1 321 IMKRIKAKGIPVIIYEPVMQEDE-F--FNSRVVrDLDAFKQEADVIIS 365
                   789***************98655.3..3344444***********986 PP

>> DUF2204  Nucleotidyl transferase of unknown function (DUF2204)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   5.6e-05     0.072       4      65 ..     317     378 ..     314     387 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.6e-05
     DUF2204   4 alaevlkvLeekgvkfvviGgtvvel.algrkrlekDvDlFiteksqlleedfyreiaeeedw 65 
                  ++ ++k +++kg+ +v+i + v++  ++ + r+ +D+D F  e   ++ + + +e+a+ +d 
  CTQ28977.1 317 SIQGIMKRIKAKGI-PVIIYEPVMQEdEFFNSRVVRDLDAFKQEADVIISNRMAEELADVVDK 378
                 57889*********.******999753899****************************98886 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00084       1.1      21      73 ..      21      85 ..       2     104 .. 0.72
   2 ?   -1.0   0.0       2.1   2.7e+03      24      48 ..     154     185 ..     143     230 .. 0.58
   3 ?    0.5   0.0      0.72   9.2e+02      39      60 ..     353     374 ..     319     383 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00084
                   TTS-GGCEEEEEESSCCCHHHHHHHHC.................-EEECECHHHHHHH-SEEEE-S-HHH CS
  F420_oxidored 21 agaqpheivvansrnpekaeelaeelg.................vkvtavdneeaaeeadvvvlavkped 73
                   ++   he+v a +  + k++ l ++++                  ++t+ d+ +a ++ad v++a ++ +
     CTQ28977.1 21 QN---HEVV-ALDIVQAKVDMLNQKISpivdkeiqeylaekplnFRATT-DKHDAYRNADYVIIATPTDY 85
                   44...6666.556666666666666666666666666666666699999.***************99876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.1
                    -GGCEEEEEESSCCCHHHHHHHHC.........- CS
  F420_oxidored  24 qpheivvansrnpekaeelaeelg.........v 48 
                    +p+ iv++ +r+  +ae +a+ l+          
     CTQ28977.1 154 HPSRIVIG-ERS-ARAERFADLLKegaikqdipT 185
                    55667766.444.345555555552223333333 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.72
                    HHHHHHHHC-EEECECHHHHHH CS
  F420_oxidored  39 aeelaeelgvkvtavdneeaae 60 
                    ++++++e+ v ++ + +ee+a+
     CTQ28977.1 353 LDAFKQEADVIISNRMAEELAD 374
                    4444444443333333333332 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.42   5.4e+02      59      88 ..     111     141 ..      89     181 .. 0.53
   2 ?    8.5   0.0    0.0022       2.8      18      75 ..     320     379 ..     308     384 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.42
                    EEE-S-HHHHGGGHHHHHHH.--SEEEE-TT CS
  CoA_binding_2  59 vdvftppeatpeivkealal.gakavwlqpg 88 
                    +++++++++ +   ++++++ g+  v++ p+
     CTQ28977.1 111 AVMIIKSTIPVGFTRDIKERlGIDNVIFSPE 141
                    3344445555555555533335555555555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0022
                    HHHHHHHHHT--EEEESSS-..SEETTEES----T....T--EEEE-S-HHHHGGGHHHH CS
  CoA_binding_2  18 kvlryllehglpvvpVnpke..eeilgekvyaslaedpepvdlvdvftppeatpeivkea 75 
                     +++ ++++g+pv+   p    +e +  +v+++l++ +++ d++   + +e+++++v+++
     CTQ28977.1 320 GIMKRIKAKGIPVIIYEPVMqeDEFFNSRVVRDLDAFKQEADVIISNRMAEELADVVDKV 379
                    5899999*******999987669999999******857*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 2939.04
//
Query:       CTQ28978.1  [L=456]
Description: phosphomannomutase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-34  116.9   0.0    1.4e-33  115.5   0.0    1.6  2  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    1.6e-23   83.1   0.0    2.5e-23   82.4   0.0    1.3  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    3.8e-23   82.0   0.2    8.2e-23   81.0   0.2    1.6  1  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
    7.7e-11   42.0   0.1      2e-10   40.7   0.1    1.7  1  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.0   3.2e-37   1.4e-33       4     135 ..       7     134 ..       5     136 .. 0.96
   2 ?   -3.9   0.0       2.3     1e+04     110     133 ..     173     196 ..     172     198 .. 0.80

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 3.2e-37
                 BBTTCEEEECCHCTBSCCHHHHHHHHHHHHCHHCSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEEEB-HHHHHHHHHHCCECEEEEE--TTS CS
   PGM_PMM_I   4 fgtsGlRgkvgegeltpelveklgqaiaeylkaeakkkkvvvGrDtRvssrelaealaaglaanGvevillgllptPavsfairklkadagimitaSHn 102
                 f+++++Rg+ g +el+++ ++++g+a++e lk     +k+vvG+D R +s+ l+ ala+gl+ +G +v+++gl  t +++fa+ +l++d+gi +taSHn
  CTQ28978.1   7 FKAYDIRGELG-EELNEDIAYRIGRAYGEFLKP----GKIVVGGDVRLTSESLKLALARGLMDAGTDVLDIGLSGTEEIYFATFHLGVDGGIEVTASHN 100
                 99*********.67******************9....9************************************************************* PP

                 -TTCCCEEEEETTTCE--CHH.HHHHHHHHCCT- CS
   PGM_PMM_I 103 ppeyngiKvylsnGgpispev.eekIeaiiekee 135
                 p +yng+K++ +n  pis ++  + I++ +e+++
  CTQ28978.1 101 PMNYNGMKLVRENAKPISGDTgLRDIQRLAEENQ 134
                 ******************9998888988888776 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.3
                 EEEETTTCE--CHHHHHHHHHHCC CS
   PGM_PMM_I 110 KvylsnGgpispeveekIeaiiek 133
                 K++ ++G  +  +v +++e+++++
  CTQ28978.1 173 KLVVNSGNGAAGHVIDEVEKRFAA 196
                 888888988999999999988865 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0   5.5e-27   2.5e-23       2     110 ..     264     370 ..     263     374 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 5.5e-27
                  HHHHHHHHHHHHHCHCSTTTCEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETTCEEEETTTBSS--HHHHHHHHHHHHHHH CS
  PGM_PMM_III   2 gdqllallakylleeklkpgagvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeSghiifldeattkDGilaallvleilaet 99 
                  g +++ lla+++l+  ++pga+++++   ++ + +++ + g++ v++k+G+ +++e+m++e+a +GgE+S+h++f+d+a+++ G++++llv+e+l  +
   CTQ28978.1 264 GYYIVGLLAEAFLQ--KQPGAKIIHDPRLTWNTVDIVTRSGGQPVMSKTGHAFIKERMRQEDAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELLCLK 359
                  788999*****999..478889**************************************************************************** PP

                  TS-HHHHHHHH CS
  PGM_PMM_III 100 gkslselleel 110
                  + sl++l+++ 
   CTQ28978.1 360 NSSLKSLVADR 370
                  *******9775 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.2   1.8e-26   8.2e-23       1     101 [.     153     257 ..     153     259 .. 0.95

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 1.8e-26
                 .HHHHHGGGTS-HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-.....EEEES-----TT-TTSS----TT-TTTTHHHHGGGGG-SEEEEE-TTS- CS
  PGM_PMM_II   1 eaYiealkekvdseaikksglkvvidplhGaggeilkellkelgv.....dvvelnaepdpdfptkapnpeekealkllielvkkegadlglafDgDaD 94 
                 ++Y+++l   vd  a+  ++lk+v++ ++Ga+g++++e+ k++ +      +++++++pd++fp++ pnp  +e+ ++ +++v++++ad+g+afDgD D
  CTQ28978.1 153 KEYVDHLMGYVD-LANFTRPLKLVVNSGNGAAGHVIDEVEKRFAAagapvTFIKVHHQPDGHFPNGIPNPLLPECRQDTADAVRAHQADMGIAFDGDFD 250
                 58**********.5777899**********************999999*9************************************************* PP

                 BEEEEET CS
  PGM_PMM_II  95 Rlgvvde 101
                 R++++d+
  CTQ28978.1 251 RCFLFDD 257
                 *****86 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.1   4.4e-14     2e-10       1      73 [.     379     455 ..     379     456 .] 0.84

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 4.4e-14
                 CCCCCHCC-TT..EECCCCCTTHHCCCCCCCCGCCEEEE........EEEETTCCEEEEEEEES.SHHHHHHHHHHHHHHH CS
  PGM_PMM_IV   1 linvrveekakvvaalaallkvasikeglkilledGrrla.......vRpSGTepllrvyvEak.sdeelarlaeevaell 73 
                 +in+++ + a+   a+a++ + + ++ ++ i++ dG++++       +R S+Tep++r++vE++ + ++++   ee+++ll
  CTQ28978.1 379 EINRKLGNAAE---AIARIRA-QYEPAAAHIDTTDGISIEypewrfnLRTSNTEPVVRLNVESRaDTALMNAKTEEILALL 455
                 8999****855...5555533.3566999999999999999999999**********************999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3479.69
//
Query:       CTQ28979.1  [L=471]
Description: mannose-1-phosphate guanyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-76  256.7   0.0      1e-75  254.5   0.0    1.9  2  NTP_transferase  Nucleotidyl transferase
    2.2e-64  215.9   0.2    4.5e-64  214.9   0.2    1.5  1  MannoseP_isomer  Mannose-6-phosphate isomerase
    3.9e-12   45.7   0.2    8.1e-12   44.7   0.2    1.6  1  Cupin_2          Cupin domain
    2.1e-09   37.9   0.0    5.2e-09   36.7   0.0    1.8  1  NTP_transf_3     MobA-like NTP transferase domain
    5.4e-05   23.1   0.1    0.00014   21.7   0.1    1.7  1  AraC_binding     AraC-like ligand binding domain
  ------ inclusion threshold ------
       0.02   14.6   0.0      0.035   13.8   0.0    1.3  1  DUF1088          Domain of Unknown Function (DUF1088)
      0.039   14.2   0.0      0.072   13.3   0.0    1.4  1  CENP-C_C         Mif2/CENP-C like
      0.064   13.1   0.1        8.7    6.2   0.1    2.4  2  Maf              Maf-like protein


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.5   0.0   4.7e-79     1e-75       2     247 ..       4     288 ..       3     289 .. 0.97
   2 ?   -0.6   0.0      0.36     8e+02      36      71 ..     316     351 ..     307     375 .. 0.77

  Alignments for each domain:
  == domain 1  score: 254.5 bits;  conditional E-value: 4.7e-79
                      EEEE--S--GGGTTCCTTSSGGGSEETTET.ETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTH CS
  NTP_transferase   2 avILaGGsGtRLwPLtrtlakklvpvlgke.rliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaa 94 
                      +vI+aGG+G+RLwP++r+l++k+++ l ++ +++q t++rl+  +i+e++v++++eh+flv+eql++ +k++   +i+lep g++tA+A+alaa
       CTQ28979.1   4 PVIMAGGTGSRLWPMSRELYPKQFLRLFGQnSMLQETITRLSGLEIHEPMVICNEEHRFLVAEQLRQLNKLS--NNIILEPVGRNTAPAIALAA 95 
                      8**************************9999**************************************988..******************** PP

                      HHHTTSSE..EEEEETTEEEEST..THHHHHHHHHTHSSTT.SEEEEEEESS-CTTSEEEEEC......TTS...BEEEEECS-SSHSHCSEEC CS
  NTP_transferase  95 elledeksdelvlvLggDhlikd..ayeeavkkaiekaakg.tvtfgivpveeateyGviead......eeg...rverfvEKPkeakaselas 176
                      + + ++ +d+l+lvL++Dh+i++   + +a++ a+++a +g +vtfgivp++++t+yG+i+++        +   +v rfvEKP++++a+ +++
       CTQ28979.1  96 LQATRHGDDPLMLVLAADHIITNqpVFHDAIRVAEQYADEGhLVTFGIVPNAPETGYGYIQRGvaltdsA-HtpyQVARFVEKPDRERAEAYLA 188
                      ***********************999*************************************9998641.2568******************* PP

                      CSEEEEETTHHHHHHH.CCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE............................-EEEXSSHHHHHHH CS
  NTP_transferase 177 sGiYvfnsevllflak.dleelkrgedeitdilpkaleegkvalaflfkdae............................yWsDvGtldsllea 241
                      sG Y++ns++++f+ak +l+el++ +++i +++++a+++ ++  +f+    +                             WsDvG++++l+e+
       CTQ28979.1 189 SGEYYWNSGMFMFRAKkYLSELAKFRPDILEACQAAVNAADNGSDFISIPHDifcecpdesvdyavmektadavvvgldaDWSDVGSWSALWEV 282
                      *********************************************99999779***************************************** PP

                      HHHHHH CS
  NTP_transferase 242 neklae 247
                      + k+++
       CTQ28979.1 283 SPKDEQ 288
                      *99986 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.36
                      HHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGG CS
  NTP_transferase  36 atlsrlansgieeiivvltqehsflveeqlkegskf 71 
                      + +++l+  ++++ ++v+++e+s+ v++ ++  ++ 
       CTQ28979.1 316 IGVENLVIVSTKDAVLVMNRERSQDVKKAVEFLKQN 351
                      556777777888888888888888888877766654 PP

>> MannoseP_isomer  Mannose-6-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9   0.2     2e-67   4.5e-64       1     151 []     316     466 ..     316     466 .. 0.99

  Alignments for each domain:
  == domain 1  score: 214.9 bits;  conditional E-value: 2e-67
  MannoseP_isomer   1 vGvedlvvvetkdavlvadkdkvqdvkkvveelkaegreeaelhrevyrPWGsyevldegeryqvkritvkPgeklslqkhhhraehWvvvkGt 94 
                      +Gve+lv+v+tkdavlv+++++ qdvkk ve lk+++r+e++ hre+yrPWG+ +v+ ++ r++v ritvkPg  +s+q+hhhraehWv+++Gt
       CTQ28979.1 316 IGVENLVIVSTKDAVLVMNRERSQDVKKAVEFLKQNQRSEYKRHREIYRPWGRCDVVVQTPRFNVNRITVKPGGAFSMQMHHHRAEHWVILAGT 409
                      79******************************************************************************************** PP

  MannoseP_isomer  95 akvtvddevlllkenestyiplgaihrlenpGkiplelievqsGsylgeddivrled 151
                       +vtv+ +++ll+en+st+ip ga h+lenpG+iple++e+qsGsylgeddi+r++d
       CTQ28979.1 410 GQVTVNGKQFLLTENQSTFIPIGAEHSLENPGRIPLEVLEIQSGSYLGEDDIIRIKD 466
                      ******************************************************987 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.2   3.6e-15   8.1e-12       2      70 ..     382     450 ..     381     451 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 3.6e-15
                 EEEEETTEEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2   2 lvelppGesapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllvv 70 
                 +++++pG+ + +  H++  e  ++l G+g +tv+g+++ l++ +s ++p g +H ++N+g  p+++l +
  CTQ28979.1 382 RITVKPGGAFSMQMHHHRAEHWVILAGTGQVTVNGKQFLLTENQSTFIPIGAEHSLENPGRIPLEVLEI 450
                 5799****99999988888*****************************************99***9987 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   2.3e-12   5.2e-09       2     114 ..       5     132 ..       4     215 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 2.3e-12
                   EEEEESS-TTT....TT..THHHHCC.CCCCHHHHHHHHHCTT.-CEEEEECSHC......HHHHHHTTCTS-EEE-TTSS-SHHHHHHHHHHHH.. CS
  NTP_transf_3   2 viLAGGrSsRm....gg..dKallpl.ggkpllervldalraagvdevvvvggde......evlaalarlgvrvvededpgkgplaslaaalraaa. 84 
                   vi+AGG +sR+     +  +K++l+l g+ ++l+ ++ +l+ ++++e +v++++e      e l++l++l   ++ ++  g++++ ++a a+ +a+ 
    CTQ28979.1   5 VIMAGGTGSRLwpmsRElyPKQFLRLfGQNSMLQETITRLSGLEIHEPMVICNEEhrflvaEQLRQLNKLSNNIILEPV-GRNTAPAIALAALQATr 100
                   9*********966642378*******9999***************8888888886566555455566666777888876.77777776655544333 PP

                   ..SSSCEEEEETT-TT--HHHHHHHHHCHHHH CS
  NTP_transf_3  85 ..dadavlvlacDmPlltpelverllaaaaas 114
                     d+  +lvla+D++  ++ + +  ++ a++ 
    CTQ28979.1 101 hgDDPLMLVLAADHIITNQPVFHDAIRVAEQY 132
                   5488889*******998888877777666554 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   6.5e-08   0.00014      16      76 ..     393     450 ..     387     459 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 6.5e-08
                   EEEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE CS
  AraC_binding  16 fpphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyf 76 
                   ++ h+h   + +++++Gtg++++ng+++ l++++  ++p g  H++e  +  ++++ +l++
    CTQ28979.1 393 MQMHHHRAEH-WVILAGTGQVTVNGKQFLLTENQSTFIPIGAEHSLENPG--RIPLEVLEI 450
                   5556665555.5789*******************************9998..666666655 PP

>> DUF1088  Domain of Unknown Function (DUF1088)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.5e-05     0.035      13      64 ..     322     377 ..     310     393 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
     DUF1088  13 vvrvaneaefilnrqraedvhkhaefesecaqtladrree.ek...mCdhlisaak 64 
                 v+    +a +++nr+r++dv+k  ef  + ++   +r+ e ++   +Cd ++++ +
  CTQ28979.1 322 VIVSTKDAVLVMNRERSQDVKKAVEFLKQNQRSEYKRHREiYRpwgRCDVVVQTPR 377
                 3444578999****************999888877776652457778998887655 PP

>> CENP-C_C  Mif2/CENP-C like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.2e-05     0.072      11      74 ..     377     440 ..     368     446 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.2e-05
                 S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE- CS
    CENP-C_C  11 flasGilkLppgaeKkkknskkatlvFyViqGrvevtvsktsfvigkgsvFqvPagneysieNk 74 
                 ++    ++++pg+    +  ++    + +++G+ +vtv++++f++++ ++  +P g e s+eN 
  CTQ28979.1 377 RFNVNRITVKPGGAFSMQMHHHRAEHWVILAGTGQVTVNGKQFLLTENQSTFIPIGAEHSLENP 440
                 555556677777777777778888888899********************************95 PP

>> Maf  Maf-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.011        24      37     131 ..      93     200 ..      38     211 .. 0.69
   2 ?    6.2   0.1    0.0039       8.7      38      78 ..     308     353 ..     211     362 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.011
                 HHHHHHHHHH..........TCEEEEEEEEEECE---SSHHHHHHHHHHHTTSEEEEEEEEEEEE..............EEE..EEEEEEEE.EE.--- CS
         Maf  37 lAeaKaeava..........alvigaDtvvvlilgKPkdeeealemLkklsgrthevvTgvavlk..............ekevksfvettev.tf.kel 109
                 lA       +           lv++aD +++   + P   ++a+++ ++++++ h v+ g++  +              ++++++     +v +f ++ 
  CTQ28979.1  93 LAA------LqatrhgddplMLVLAADHIIT---NQPV-FHDAIRVAEQYADEGHLVTFGIVPNApetgygyiqrgvalTDSAHT---PYQVaRFvEKP 178
                 222......1333355677788999999999...5776.4679999999998888888887775588888888877654322222...22331453566 PP

                 -HHHHHHHHHCTSGCCSTTS-- CS
         Maf 110 sdeeieaYvatgepldkAGayg 131
                 ++e  eaY+a+ge++  +G + 
  CTQ28979.1 179 DRERAEAYLASGEYYWNSGMFM 200
                 7778999999999988888776 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0039
                 HHHHHHHHH.....TCEEEEEEEEEECE---SSHHHHHHHHHHHTT CS
         Maf  38 AeaKaeava.....alvigaDtvvvlilgKPkdeeealemLkklsg 78 
                 + +K  a++      +v + D v+v++ ++ +d ++a+e+Lk+ + 
  CTQ28979.1 308 SDEKLVAAIgvenlVIVSTKDAVLVMNRERSQDVKKAVEFLKQNQR 353
                 45555544477765567788*****9****************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3337.87
//
Query:       CTQ28980.1  [L=468]
Description: gluconate-6-phosphate dehydrogenase, decarboxylating [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-133  445.0   0.1   1.7e-133  444.5   0.1    1.3  1  6PGD            6-phosphogluconate dehydrogenase, C-terminal 
    6.9e-52  175.8   0.0    1.5e-51  174.7   0.0    1.6  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    0.00054   19.6   0.0     0.0011   18.7   0.0    1.5  1  ApbA            Ketopantoate reductase PanE/ApbA
     0.0012   19.0   0.1     0.0029   17.7   0.0    1.6  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
     0.0015   19.1   0.0      0.005   17.4   0.0    2.0  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.019   14.8   0.0    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.029   13.7   0.0      0.051   12.9   0.0    1.4  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.071   13.1   0.0       0.17   11.8   0.0    1.7  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
       0.12   12.0   0.0       0.76    9.3   0.0    2.2  2  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin


Domain annotation for each model (and alignments):
>> 6PGD  6-phosphogluconate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  444.5   0.1  8.4e-137  1.7e-133       1     289 []     179     466 ..     179     466 .. 0.99

  Alignments for each domain:
  == domain 1  score: 444.5 bits;  conditional E-value: 8.4e-137
        6PGD   1 GhyVKmvHNGieygdmqliaEaydllkkvlglsneeiaevFeeWnkgelesyLieitakilrkkdeedgkplvdkilDkagqkGTgkwtvqealelgvp 99 
                 GhyVKmvHNGieygdmqliaEay+llk +l lsnee+a++F+eWn+gel+syLi+it++i++kkde dgk+lvd+ilD+a +kGTgkwt+q++l+lg p
  CTQ28980.1 179 GHYVKMVHNGIEYGDMQLIAEAYALLKGGLALSNEELAQTFTEWNEGELSSYLIDITKDIFTKKDE-DGKYLVDVILDEAANKGTGKWTSQSSLDLGEP 276
                 9****************************************************************6.89****************************** PP

        6PGD 100 vptiaeavfaRllSslkeervkaskllkeeeekeeedkeefiedlrkAlyaskivsYaqglellkaaskeygwnlnlaeiariWrgGCiIrakfldkik 198
                 +++i+e+vfaR++Sslk++rv+ask+l++++++ + dk+efie++r+Aly++kivsYaqg+++l+aas+ey+w+ln++eia+i+r+GCiIra+fl+ki+
  CTQ28980.1 277 LSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASDEYNWDLNYGEIAKIFRAGCIIRAQFLQKIT 375
                 ***************************99999******************************************************************* PP

        6PGD 199 eafeknpelenllldpefakelkealealrrvvalaveagipvpalsaalaYldslrserlpanliqaqrDyFGahtyervdkegkfhteW 289
                 +a+++n+ ++nlll+p+f++  +++++alr+vva+av++gipvp++saa+aY+ds+rs+ lpanliqaqrDyFGahty+r+dkeg+fhteW
  CTQ28980.1 376 DAYAQNAGIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAIAYYDSYRSAVLPANLIQAQRDYFGAHTYKRTDKEGVFHTEW 466
                 ******************************************************************************************* PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.7   0.0   7.7e-55   1.5e-51       1     158 []       5     174 ..       5     174 .. 0.97

  Alignments for each domain:
  == domain 1  score: 174.7 bits;  conditional E-value: 7.7e-55
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT....EEE-SSHHHHHHHC...SEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE- CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg....akaaesieelvasl...dvvitmvkagkavdeviegllealkkgdilidg 89 
                    +ig++G++vMG+n+aln++++gy+v+v+nr++ek+ee++ae+    ++++++++e+v+sl   + +++mvkag+ +d+ i++l+++l+kgdi+idg
     CTQ28980.1   5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENpgkkLVPYYTVQEFVESLetpRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDG 100
                    69***************************************88899************************************************** PP

                    S---HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEE.......EEEEE-E CS
  NAD_binding_2  90 stsspedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaiga.......kvthviG 158
                    +++ ++dt+++++el+++g++f++++VSGGeegA kG+ sim+GG++ea+e v+p+l++i+a       +vt +iG
     CTQ28980.1 101 GNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILKQIAAvaedgepCVT-YIG 174
                    **************************************.***********************8888887777.666 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   5.4e-07    0.0011       1      99 [.       6      98 ..       6     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5.4e-07
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGG.HHHHHHHHGGGECTCEEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayq.teealeeikplldpntvvl 99
                i ++G+  +G+ la ++   g++v + +rsr     k++ + + ++ g++ ++  ++ +++  ++le    +++ vKa   t++a++++kp+ld+  +++
  CTQ28980.1  6 IGVVGMAVMGRNLALNIESRGYTVSVFNRSR----EKTEEV-IAENPGKKLVPYYTVQEFV--ESLETPRRILLMVKAGAgTDSAIDSLKPYLDKGDIII 98
                789****************************....344455.5555557777777777777..99*************853888***********98886 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.5e-06    0.0029      11      71 ..       2      62 ..       1      71 [. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.5e-06
                  TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.E.T-EEEEGCGHHH CS
  Shikimate_DH 11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkge.eiealkleelke 71
                  +++++ ++G   m++ +a ++ ++g++ v v+NR++e+ +e+  e  g+  + + +++e  e
    CTQ28980.1  2 SKQQIGVVGMAVMGRNLALNIESRGYT-VSVFNRSREKTEEVIAENPGKkLVPYYTVQEFVE 62
                  6899***********************.*************988886550344555555554 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.5e-06     0.005       1      94 [.       5     100 ..       5     103 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.5e-06
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.....-EEECECHHHHHHH-SEEEE-S-HHH.HHHHHHHCGHHHHTTSE CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.....vkvtavdneeaaeeadvvvlavkped.veevlselakdalkgkl 90 
                    +ig++G+  mg+ la+++ ++g   + + v  +r+ ek ee  +e       +  t  +  e +e    ++l vk  + +++++++l++ ++kg +
     CTQ28980.1   5 QIGVVGMAVMGRNLALNIESRG---YTVSVF-NRSREKTEEVIAENPgkklvPYYTVQEFVESLETPRRILLMVKAGAgTDSAIDSLKPYLDKGDI 96 
                    59********************...****88.7777777776655445878755555568888889999******976377899999********* PP

                    EEEE CS
  F420_oxidored  91 visv 94 
                    +i+ 
     CTQ28980.1  97 IIDG 100
                    **95 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   9.8e-06     0.019       1      40 [.       5      44 ..       5      64 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9.8e-06
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekale 40
                +++v+G  +mG+ +a  + s+g++V ++++s+e+ e++ +
  CTQ28980.1  5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIA 44
                69******************************99998765 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.6e-05     0.051      35      74 ..       2      43 ..       1      86 [. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.6e-05
                  TTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH..C CS
  2-Hacid_dh_C 35 sgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee..e 74
                  s++++G++G+  +G+++a  +++ g  v +++rs++k+e   
    CTQ28980.1  2 SKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEevI 43
                  6799******************************99887442 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.6e-05      0.17       1      58 [.       5      62 ..       5     118 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.6e-05
                    -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEE CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlv 58
                    +i+v+G+   G  lA  ++++g +v+++ r++e +ee+ +e+  +k +p ++++e ++
      CTQ28980.1  5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQEFVE 62
                    599***************************************9999999887776554 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00038      0.76       3      50 ..       2      50 ..       1      97 [. 0.82
   2 ?   -0.7   0.0      0.47   9.3e+02      78      98 ..     318     338 ..     310     342 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00038
                HTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHH.HHHHTT-E CS
        IlvN  3 kgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvk.kAkeegfe 50
                ++++i v+G+   G++ aln+   g  v v +r+ +k+ +  A++ g +
  CTQ28980.1  2 SKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEvIAENPGKK 50
                5789**************************9999887554146666655 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.47
                 HHHTGGG--TT-EEEESSSHH CS
        IlvN  78 eeeiepnlkegkalafahGfn 98 
                  e+++  l  gk++++a+Gf+
  CTQ28980.1 318 IEKVRRALYLGKIVSYAQGFS 338
                 4899999************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3630.68
//
Query:       CTQ28981.1  [L=465]
Description: putative UDP-sugar lipid carrier transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-66  223.4   0.1    1.6e-66  223.4   0.1    1.8  2  Bac_transf     Bacterial sugar transferase
    3.4e-30  105.3   0.1      6e-30  104.5   0.1    1.4  1  CoA_binding_3  CoA-binding domain
  ------ inclusion threshold ------
        5.3    7.1   8.5        3.7    7.6   1.9    2.7  2  Ac76           Orf76 (Ac76)


Domain annotation for each model (and alignments):
>> Bac_transf  Bacterial sugar transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2      0.64   3.8e+03       3      25 ..     108     130 ..     108     139 .. 0.75
   2 !  223.4   0.1   2.8e-70   1.6e-66       1     181 [.     275     457 ..     275     460 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.64
  Bac_transf   3 lfDivlsllalillsplllvial 25 
                 +fDi+l   a++ l ++++ ia+
  CTQ28981.1 108 AFDIFLQWYAVVSLTIVFCRIAI 130
                 58999999999998888665555 PP

  == domain 2  score: 223.4 bits;  conditional E-value: 2.8e-70
  Bac_transf   1 KrlfDivlsllalillsplllvialliklessggpvffkqkRvGkngkpFkiyKFRsmvkdaekklgavvklkndpritkvGrflRktslDELPqlinV 99 
                 Krl Di++sl++l+l+sp+l+via+ +k++s +gpv+f+q R+G++gkp+k++KFRsm++ ++++   ++++knd r+tkvGrflR+tslDELPq++nV
  CTQ28981.1 275 KRLEDIIISLIILVLISPVLFVIACTVKCSS-PGPVLFRQIRYGMDGKPIKVWKFRSMTVMENDS-VVTQATKNDVRVTKVGRFLRRTSLDELPQFFNV 371
                 9******************999******885.66************************8877775.8999***************************** PP

  Bac_transf 100 LkGdMslVGpRPelpeeveeeieeyeeeeerlkvkPGltGlaqvnsgrse....lsleeklelDleYvenlslllDlkillktvka 181
                 L G+Ms+VGpRP++++++e+ ++  e ++ r+kvkPG+tGlaqvn+ r+e    +++++++e+DleY++++s++lDlki++ t+++
  CTQ28981.1 372 LLGEMSIVGPRPHAVAHNEQYRHLIEGYMLRHKVKPGITGLAQVNGWRGEtdtlEKMQKRVEFDLEYIREWSVWLDLKIIFLTIFK 457
                 ****************766666555445788**************999888999*****************************986 PP

>> CoA_binding_3  CoA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.1     1e-33     6e-30       2     175 .]      65     239 ..      64     239 .. 0.82

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 1e-33
  CoA_binding_3   2 alGvYqswrgrsllrlllrvlsawllvllllal.lsfslkdafSRlwlaywa.vvglvllivsrllvra..vlrrlrrngrnerrvvavgggeela 93 
                    ++++Y+swrg + +++l+ +l++w+l l+++++ +sf+ + +f+  +++ w+ vv+l+++ ++ ++ +a  ++r+   n+r+ +++++ + g +l 
     CTQ28981.1  65 ITDFYRSWRGVKISTELKLLLQNWTLGLIFTIGiTSFLSSYNFAFDIFLQWYaVVSLTIVFCRIAIRFAagLIRKFGYNTRYVAVAGSMPAGINLL 160
                    68***************************8777255555667999666666516666666655444433113466666777777777888888888 PP

  CoA_binding_3  94 kqiranpelgfrvvgvfddrddarseevagvpvlgnladlveyvretrvdevylaLplsaearilrlvkelrddpvnirliP 175
                    +  +++p+lgf v gv+dd++ +  +   ++ + g+l dl++ +++ ++d +y+a+ + +e++i+ lv+el ++++++ liP
     CTQ28981.1 161 RSFEEEPWLGFVVKGVYDDQPTDDES---NIIYAGTLSDLISEAKAGKLDRIYIAMRMGDEEKIKNLVRELTNTTCSVMLIP 239
                    888******************87777...8***************************************************9 PP

>> Ac76  Orf76 (Ac76)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.9   0.00062       3.7       4      39 ..      27      61 ..      25      69 .. 0.83
   2 ?    2.3   0.6     0.028   1.6e+02      16      42 ..     273     300 ..     267     307 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00062
        Ac76  4 illlialivlafildkneklsellltllllfvlFii 39
                ++ l++l  + fi +++ +++ell+ l++l+ +F +
  CTQ28981.1 27 TIILLGLYCICFIHQQYFGTKELLIGLIVLV-IFQM 61
                56788999***************99987765.5655 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.028
        Ac76  16 ildknek.lsellltllllfvlFiilln 42 
                 ++ + e  + +l++ +l+  vlF+i   
  CTQ28981.1 273 VFKRLEDiIISLIILVLISPVLFVIACT 300
                 5555543135677777777778877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3518.95
//
Query:       CTQ28982.1  [L=384]
Description: Glycosyltransferase, group 1 family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-26   92.2   0.0    5.4e-26   91.2   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    8.4e-19   68.3   0.0    1.5e-18   67.5   0.0    1.4  1  Glyco_trans_1_4  Glycosyl transferases group 1
    2.4e-10   40.7   0.1    3.8e-10   40.0   0.1    1.4  1  Glyco_transf_4   Glycosyltransferase Family 4
  ------ inclusion threshold ------
      0.024   14.4   0.0      0.041   13.6   0.0    1.4  1  Ku               Ku70/Ku80 beta-barrel domain
      0.086   13.3   0.0       0.14   12.6   0.0    1.3  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0   1.5e-29   5.4e-26      10     166 ..     199     350 ..     193     355 .. 0.89

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 1.5e-29
                      TTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSB CS
  Glycos_transf_1  10 gknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisE 103
                         +k  ++l+ +r++++K+ dl+++af + +++     +lv++G+g+e +++k++      s+n+++lg+++++ + e ++na++fv+    E
       CTQ28982.1 199 LNENKSDYYLTASRMVPYKRMDLIVEAFSHMPDK-----RLVVIGSGSEMEKIKSK-----ASKNIEILGYQPNSIMQEHMQNAKAFVFA-AEE 281
                      44578999*********************98655.....******99999999988.....6789************************9.78* PP

                      SS-HHHHHHHHTT--EEEETTTTHCHHCHTTT....SEEEE-TT-HHHHHHHHHHHHHSH..HHHHHHH CS
  Glycos_transf_1 104 gfGivllEAmaaglpviasnaggpaevvkdge....tGllvkpnnaealaeairkllede..elrerlg 166
                       fGi+++EA a+g+pvia   gg +e+++++     tG+++++ ++ + ++ai+k+++ +   ++ +++
       CTQ28982.1 282 DFGITPVEAQACGTPVIAFGKGGSLETIRPYGvekpTGVFFDKQDVSSVIQAIEKFETVSdtIEPTACR 350
                      *******************************************************98755445555555 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   4.2e-22   1.5e-18       5     130 ..     208     336 ..     204     338 .. 0.87

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 4.2e-22
                      EEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---...HHHHHHHTT-T.TEEEE---TH..HHHHHHH-SEEEE--.---SHHHHHHHHTT CS
  Glyco_trans_1_4   5 lfvGrleenvkgvdllleavpllrkkdvrlvivGdgp.rpeeleelaagleerveftGfved..laellaaadvfvaPs.egfglkllEamaag 94 
                      l+ +r++ ++k++dl++ea+ ++ +k  rlv++G+g+ + e+++++a   ++++e++G+ ++  ++e++++a+ fv+   e fg++ +Ea a+g
       CTQ28982.1 208 LTASRMV-PYKRMDLIVEAFSHMPDK--RLVVIGSGSeM-EKIKSKA---SKNIEILGYQPNsiMQEHMQNAKAFVFAAeEDFGITPVEAQACG 294
                      6778995.66**************89..******99744.4777666...489*******4458***************889************ PP

                      -EEEE-TGGGTTT--...T...TSSEE--TT-HHHHHHHHHH CS
  Glyco_trans_1_4  95 lpvVatdvggiaevv...g...engllvppgdpealaeailr 130
                      +pv+a+  gg  e++   g    +g+ ++++d+++ ++ai++
       CTQ28982.1 295 TPVIAFGKGGSLETIrpyGvekPTGVFFDKQDVSSVIQAIEK 336
                      ******9999999999986433579*************9986 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   1.1e-13   3.8e-10      24     169 ..      42     195 ..      17     196 .. 0.76

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 1.1e-13
  Glyco_transf_4  24 vvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrlgiplVltvHglye.......... 108
                     +++ + +++l+ + ++ ++++  ++ ++ +++++l+f++ + ++l+     ++ + s +a+  + l      +  ++ +vH++            
      CTQ28982.1  42 FLSEDARKELHCK-KVQTSFIQNFPKSKDKYQLYLPFMPLAIEQLDVSSHNIIISSS-HAVAKGILTGP---DQLHISYVHSPIRyawdlqhqyl 131
                     4444444444444.666777777777888889999***********99999995555.56556655555...8889********9*********9 PP

  Glyco_transf_4 109 ......krllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDle 169
                           k+  ++  ++l   +r + +r+++ +d++ia+S+++a+++++ yg +     Vi+++vD+ 
      CTQ28982.1 132 keaglvKGVKGNLARWLLHKIRLWDYRTANGVDHFIANSQFIARRIKKVYGRD---ADVIYPPVDIG 195
                     9*888866666666666666777788889**********************66...5********85 PP

>> Ku  Ku70/Ku80 beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.1e-05     0.041      63     110 ..     235     280 ..     170     286 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
          Ku  63 vvpltkeelekiksfdskglkllgFvplseilkeylsikssyfiyPdd 110
                 vv+ +  e+ekiks  sk +++lg+ p  +i++e+++ +++ f+++ +
  CTQ28982.1 235 VVIGSGSEMEKIKSKASKNIEILGYQPN-SIMQEHMQNAKA-FVFAAE 280
                 788899********77************.878777755554.555434 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     4e-05      0.14      96     152 ..     112     186 ..      89     191 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4e-05
  Glyco_trans_4_4  96 giplvvtlh............glllrrg..sgavrrly...ralerrllrradavlvvseaeaeelra.lgvpad 152
                      +i +v+++             ++ l++g  +  +r+l+   r +++r+++++d+++++s+++a+++   +g++ad
       CTQ28982.1 112 HISYVHSPIryawdlqhqylkEAGLVKGvkGNLARWLLhkiRLWDYRTANGVDHFIANSQFIARRIKKvYGRDAD 186
                      4555666633322222222221222233432334444455577799*********************96666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3188.31
//
Query:       CTQ28983.1  [L=482]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-53  181.5  16.6      2e-53  181.5  16.6    2.3  2  Polysacc_synt_3  Polysaccharide biosynthesis protein
    8.8e-18   64.6  25.0    8.8e-18   64.6  25.0    3.0  3  Polysacc_synt    Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Polysacc_synt_3  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.5  16.6   2.2e-57     2e-53       6     293 .]      36     322 ..      35     322 .. 0.98
   2 ?    0.8   2.2     0.026   2.3e+02      93     146 ..     332     387 ..     323     460 .. 0.83

  Alignments for each domain:
  == domain 1  score: 181.5 bits;  conditional E-value: 2.2e-57
  Polysacc_synt_3   6 LspedFGvvaialvvislanlfvdmGlssaliqkedlteedlstvftfnlvlgllialvlfllapliasfynqpelvtvlrvlalvlilsglss 99 
                      +s e  G +++++++i+++  ++ +G+  a++ ++d+++++++ +ft+ l l++l++++ +l+  ++ +   +p +  +  +l+++l+l ++s 
       CTQ28983.1  36 ISTEQLGSITLCTTIIAILINVSAVGFADAIVNRHDIKKNEIDAIFTLILSLSILLYILSVLSLLFLENRGVSPLVTHIYPILGVKLLLDSISF 129
                      578999**************************************************************************************** PP

  Polysacc_synt_3 100 vqeallrrelkFkklfkitlvssvvgvivaivlAllglgvwALvigtllssllslvllwlaskwrprlkfslkslkelfsfglklllsnllnyl 193
                      v+ a+l+r+++Fkk++++t++ sv++v++++ + +   g +A++i+ l++sl+s+ +lwl++ ++p l+fs + l++   fg++  l++++n +
       CTQ28983.1 130 VPLAILSRKMEFKKIAVRTILCSVLSVFISVPALISHNGFYAIIISLLTTSLVSFSVLWLSAGYKPTLSFSKQCLSDFYDFGINNCLTKIVNSF 223
                      ********************************************************************************************99 PP

  Polysacc_synt_3 194 arnldnlliGkvlssaaLGlYsvakrlaslpvaeitsviakVlfPalSrlqddk.kklrelylkvlrlialivlPiavglavvaellvkvllGs 286
                        n dn++ G + + ++LG+Y  +kr++s+ + +i+s+i++V +P++S l  d+ +kl++ ylk++ ++ li++Pi++gl+++++ ++++++G+
       CTQ28983.1 224 --NFDNIFLGFFANLSTLGIYGFGKRVLSIFTDIISSAISNVSYPIYSTLNHDQsDKLKTIYLKTIYFSVLISMPIFMGLILISDDIIPLVFGE 315
                      ..79**********************************************9776279************************************* PP

  Polysacc_synt_3 287 qWleavp 293
                      qW +avp
       CTQ28983.1 316 QWVSAVP 322
                      ***9996 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.026
  Polysacc_synt_3  93 ilsglssvqeallrrelkFkklfkitlvssvvgvivaivlAllglgv..wALvigt 146
                      +ls + s+q +l++ + +   + k++l+ +v ++i+a+vlA  g  +   A+vi+t
       CTQ28983.1 332 FLSCIGSLQLSLIKAKGNTGWILKYQLFQQVTTGILALVLAKYGPEYviMAIVIKT 387
                      56677777888888888888899999999999999999999988765225666654 PP

>> Polysacc_synt  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6  25.0   9.8e-22   8.8e-18       4     272 ..      10     270 ..       7     272 .. 0.89
   2 !    9.5   5.6   6.3e-05      0.57      67     172 ..     275     384 ..     268     400 .. 0.85
   3 ?   -2.7   4.8      0.34     3e+03      88     140 ..     420     475 ..     409     481 .. 0.77

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 9.8e-22
  Polysacc_synt   4 gvivlllsqlitkllafvtlvylarilgpegfGlvalalaivtllviltdlGlnaalvreiakyrekkelvslillnvllvllvlvllflllllia 99 
                     +i++++s+++ +l af +++  +  +++e+ G  +l+++i+ +l++++  G+  a+v + +  +    ++  i+  +l+++++l +l +l+ll+ 
     CTQ28983.1  10 SIIWYFISNIFPALSAFFIFTFSSHSISTEQLGSITLCTTIIAILINVSAVGFADAIVNRHDIKKN---EIDAIFTLILSLSILLYILSVLSLLFL 102
                    689********************************************************9999997...566666666666777777777777777 PP

  Polysacc_synt 100 aflglpelavlylilalmllllvgvasfrrglfqglermkyaavsqvveqlsrvilvliavflfldivaavlgavlaalvggivslavlrkkfrpr 195
                    ++ g + l++++  +  + lll +++ ++  ++ ++  +k +av++++ ++  v  ++ a++ ++ ++a++++++  +lv+  v+++     ++p+
     CTQ28983.1 103 ENRGVSPLVTHIYPILGVKLLLDSISFVPLAILSRKMEFKKIAVRTILCSVLSVFISVPALISHNGFYAIIISLLTTSLVSFSVLWLSAG--YKPT 196
                    999999999987777777777********9999999999999999998888888888999999999***************999988888..8888 PP

  Polysacc_synt 196 fvilslklvrellsfsapltisslaillytyidsillglllgaeavGiYnaayqllvaisgllapivtaalfPvfse 272
                     +++ ++   ++  f+++ +++ +++++  ++d i+lg++++ +++GiY ++ ++l++ + +++++++ + +P+ s 
     CTQ28983.1 197 LSFS-KQCLSDFYDFGINNCLTKIVNSF--NFDNIFLGFFANLSTLGIYGFGKRVLSIFTDIISSAISNVSYPIYST 270
                    8888.*********************86..78*****************************************9886 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 6.3e-05
  Polysacc_synt  67 yrekkelvslillnvllvllvlvllfllllliaa.....flglpelavlylilalmll.llvgvasfrrglfqglermkyaavsqvveqlsrvilv 156
                    +++  +l +++l+ +++++l+++ +f  l li++     ++g++ ++ +  i ++++  +l  + s++ +l +++ +  +++  q+ +q++  il 
     CTQ28983.1 275 QSD--KLKTIYLKTIYFSVLISMPIFMGLILISDdiiplVFGEQWVSAVPTIKFFFVFgFLSCIGSLQLSLIKAKGNTGWILKYQLFQQVTTGILA 368
                    444..68999**********************99****988888776655555554446************************************* PP

  Polysacc_synt 157 liavflfldivaavlg 172
                    l++  ++  +v+++++
     CTQ28983.1 369 LVLAKYGPEYVIMAIV 384
                    **99999987776654 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.34
  Polysacc_synt  88 lvllfllllliaa.flglpelavlylilalmll..llvgvasfrrglfqglermky 140
                    l++ +++++l+++ +++   + +l++ ++  +l  +lv++++f r ++  l++ k+
     CTQ28983.1 420 LIMMTVCFYLLKEeIYSVNLFLYLLVQIFCCGLvyFLVTFVLFKRDILSILHMLKS 475
                    67889999999888888777777776666666667888888888888888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       911  (0.0508115); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3847.62
//
Query:       CTQ28984.1  [L=60]
Description: hypothetical protein CH1034_250112 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 469.02
//
Query:       CTQ28985.1  [L=336]
Description: Polysaccharide pyruvyl transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-07   31.3   1.0      1e-06   28.9   0.1    2.5  3  PS_pyruv_trans  Polysaccharide pyruvyl transferase


Domain annotation for each model (and alignments):
>> PS_pyruv_trans  Polysaccharide pyruvyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.19   3.4e+03       1      20 [.      12      31 ..      12      67 .. 0.72
   2 !   28.9   0.1   5.6e-11     1e-06     209     284 ..     122     190 ..      73     192 .. 0.81
   3 ?   -3.1   0.1      0.31   5.6e+03      35      49 ..     250     264 ..     231     296 .. 0.50

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.19
                    -HHHHHHHHHHHHHHHHTT- CS
  PS_pyruv_trans  1 NyGDelilealvklLrelgp 20
                    N+GD+l ++   +l+ +++ 
      CTQ28985.1 12 NFGDDLNSWLWDTLIPGYFD 31
                    89999988888888877774 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 5.6e-11
                     ........................HH-TTS-HHHHHHHHHHHHHHHHHTSSEEEE--HHHHHHHHHHT--EEEE-- CS
  PS_pyruv_trans 209 llllpivkkdglelddlyllllraaakkekvtildrfaspeellsliaradfvitsRlHglifalsfgvPvigisy 284
                     ++++p++  + ++  +l       a k  ++ ++ + ++   +++ i++a++vi + +H++i+a ++ vP +++ +
      CTQ28985.1 122 IIFIPHHHALLSGQWEL-------ACKLSNIEFVNPQWDSKIVIQKIRHAKMVIADAMHAAIIADAMRVPWVPVIT 190
                     56666666666666665.......5666799999999***********************************9866 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.31
                     HHHHHHHHTS-GGGE CS
  PS_pyruv_trans  35 kkllkvktpilkkls 49 
                     +++ +++ +++++ s
      CTQ28985.1 250 FYRKRNLKSKKWWRS 264
                     222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2649.52
//
Query:       CTQ28986.1  [L=360]
Description: putative Glycosyl transferase group 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-15   56.6   0.1    5.7e-15   55.3   0.0    1.7  2  Glycos_transf_1  Glycosyl transferases group 1
    4.6e-14   53.0   0.0    8.9e-14   52.1   0.0    1.4  1  Glyco_trans_1_4  Glycosyl transferases group 1
    1.4e-05   25.2   0.0    6.4e-05   23.0   0.0    2.0  2  Glyco_transf_4   Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.3   7.7e+03     131     154 ..     130     154 ..     115     157 .. 0.56
   2 !   55.3   0.0   9.5e-19   5.7e-15      16     132 ..     222     337 ..     207     349 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.3
                      CHTTTSEEEE-TT.-HHHHHHHHHH CS
  Glycos_transf_1 131 vkdgetGllvkpn.naealaeairk 154
                       k +e+G++  ++   ++ a+++ k
       CTQ28986.1 130 KKAYENGIFLYSYiPYAHSAKKMSK 154
                      4455566666655555555555555 PP

  == domain 2  score: 55.3 bits;  conditional E-value: 9.5e-19
                      EEEEEESS-TTT.TTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS-HH CS
  Glycos_transf_1  16 kiilsvgrleke.KgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEgfGiv 108
                      + i  +gr++ + Kg+d li a+a+l  ++ ++v+l+i+G+g +++++kkl++   ++ +v ++g  +  + +e     d++v+ps+ Eg ++v
       CTQ28986.1 222 YNIAIIGRVSIKqKGHDILIMALAQLAPEILDKVRLHIVGDGIDLNRVKKLIAVNCNKIDVVYHGWCK--EPWEKVYDVDLIVIPSRFEGVPLV 313
                      4566788887666******************************************************9..999999999*************** PP

                      HHHHHHTT--EEEETTTTHCHHCH CS
  Glycos_transf_1 109 llEAmaaglpviasnaggpaevvk 132
                       lE++a+ + ++asn+  + ++++
       CTQ28986.1 314 MLESLALEIDILASNIDSMIDYLE 337
                      ***************888777765 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   1.5e-17   8.9e-14       3     124 ..     223     348 ..     221     356 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 1.5e-17
                      EEEEES---GG.GTHHHHHHHHHHHH.H..H.EEEEEES---...HHHHHHHT.T-T.T.EEEE---THHHHHHHH-SEEEE--..---SHHHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkk..d.vrlvivGdgp.rpeeleelaa.gleer.veftGfvedlaellaaadvfvaPs..egfglkll 88 
                      +i  +Gr++ ++kg+d+l+ a+++l+ +  d vrl+ivGdg    +++++l+a + ++  v+++G+ ++  e + ++d+ v+Ps  eg++l++l
       CTQ28986.1 223 NIAIIGRVSIKQKGHDILIMALAQLAPEilDkVRLHIVGDGIdL-NRVKKLIAvNCNKIdVVYHGWCKEPWEKVYDVDLIVIPSrfEGVPLVML 315
                      6899****6688**********9999776647********9765.488877766543335*******998888999********999******* PP

                      HHHHTT-EEEE-TGGGTTT--TTSSEE--TT-HHHH CS
  Glyco_trans_1_4  89 EamaaglpvVatdvggiaevvgengllvppgdpeal 124
                      E++a+++ + a+++  + ++++ +  l++  d+++l
       CTQ28986.1 316 ESLALEIDILASNIDSMIDYLEPD-NLFN--DVDDL 348
                      *************97665555322.3555..55555 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.1e-08   6.4e-05       1     164 [.      30     199 ..      30     202 .. 0.83
   2 ?   -0.8   0.0      0.22   1.3e+03     146     164 ..     267     285 ..     233     305 .. 0.64

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.1e-08
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeev.......elvvrvprvplpllkrllrslaflrrlrrllkre....kpDvvHahspaal 84 
                     vGG e ++ eL ++L ++G ++ v   +++ +l ++        ++++   + p++ +   l+++++l+++ +++ +     +  +v +++ + l
      CTQ28986.1  30 VGGHELMAIELMKELYDMGKDINVAFLSQNIELKDRIakrgidiDYITISLKQPRFEFLHTLFNFSYLSKVNEAILKInsfsRGNIVIVQGDIEL 124
                     79********************9999999999999989899998888888888888999999999999999999998899999999999**99** PP

  Glyco_transf_4  85 gaallalrrrlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipn 164
                     ga++++ + + gi   l+   +y  +  k+ +k l  l+ +++ +l+++ ++ i++Se+ ++el++ y+ +++ ++V+ n
      CTQ28986.1 125 GAGYVKKAYENGIF--LYSYIPY-AHSAKKMSKALAFLRDYYYPFLYKKINKYITISEQFRKELLQ-YN-ERSEVYVVEN 199
                     ***99988644443..3333344.2233356677777778888888********************.99.7799***998 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.22
  Glyco_transf_4 146 delrerygvppekitVipn 164
                     ++++++  v+ +ki V+++
      CTQ28986.1 267 NRVKKLIAVNCNKIDVVYH 285
                     3333333333344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2816.18
//
Query:       CTQ28987.1  [L=363]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-31  108.1   0.1    5.5e-31  107.4   0.1    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    1.1e-27   97.1   0.0    2.4e-27   96.0   0.0    1.5  1  Glyco_trans_1_4  Glycosyl transferases group 1
    5.7e-05   23.4   0.0    0.00011   22.5   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1
  ------ inclusion threshold ------
      0.015   14.8   0.3      0.029   13.9   0.0    1.5  2  Mei4             Meiosis-specific protein Mei4


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   0.1   1.2e-34   5.5e-31       8     159 ..     179     330 ..     173     343 .. 0.90

  Alignments for each domain:
  == domain 1  score: 107.4 bits;  conditional E-value: 1.2e-34
                      HTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCH.SSSHHHHHHCESEEEEEE CS
  Glycos_transf_1   8 klgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevs.redleellknadifvlps 100
                      ++ kn ++  il+vgrl+ eKg+  l  a+++l    +p+++++i+G g+ee++lkk+   l+  dnv+f g++s +++l +++k  d++vlps
       CTQ28987.1 179 ETIKNIRPVNILYVGRLVCEKGIYELASAIKKL----DPEYRFTIVGTGTEEANLKKM---LGQLDNVNFMGHISdKSKLAAIFKEHDVLVLPS 265
                      55566677789********************98....8********************...788889*************************** PP

                      SS.....BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT.-HHHHHHHHHHHHHSH CS
  Glycos_transf_1 101 is.....EgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpn.naealaeairkllede 159
                       +     E fG+v++EAma+gl viasn+ gp+ ++ dg++G+l+  +    +l+ +i++l e +
       CTQ28987.1 266 KKidgweELFGLVIIEAMACGLVVIASNHIGPRGIIDDGKNGFLISDGnLTSELVTKIEELSELD 330
                      ***********************************************977888888888887765 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   5.3e-31   2.4e-27       3     131 ..     188     326 ..     186     328 .. 0.90

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 5.3e-31
                      EEEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---..HHHHHHHTT-T.TEEEE---TH...HHHHHHH-SEEEE--.......---SHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkkdvrlvivGdgprpeeleelaagleerveftGfved...laellaaadvfvaPs.......egfglk 86 
                      +il+vGrl+ + kg+  l+ a+++l   ++r++ivG g+++++l++++ +l ++v f+G+++d   la++++++dv+v+Ps       e fgl+
       CTQ28987.1 188 NILYVGRLVCE-KGIYELASAIKKLD-PEYRFTIVGTGTEEANLKKMLGQL-DNVNFMGHISDkskLAAIFKEHDVLVLPSkkidgweELFGLV 278
                      79******767.**************.55********995579*9888678.8********44456***************9998886689*** PP

                      HHHHHHTT-EEEE-TGGGTTT--..TTSSEE--TT-.HHHHHHHHHHH CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvggiaevv..gengllvppgd.pealaeailrL 131
                      ++Eama+gl v+a++  g++ ++  g+ng+l+++g+ +++l+ +i++L
       CTQ28987.1 279 IIEAMACGLVVIASNHIGPRGIIddGKNGFLISDGNlTSELVTKIEEL 326
                      **************999*99999*9********9*99********998 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.4e-08   0.00011      11      74 ..     275     339 ..     251     345 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.4e-08
  Glyco_trans_1_2  11 pnlrlfEaaacGafaltddaegleelftpgkevilfedle...elaekiryllanpeerraiaeaar 74 
                      + l++ Ea+acG +++++   g++ ++++gk ++l++d +   el+ ki++l  ++ +   i+++ar
       CTQ28987.1 275 FGLVIIEAMACGLVVIASNHIGPRGIIDDGKNGFLISDGNltsELVTKIEEL--SELDLTTIRIEAR 339
                      678899************99*****************665111566666555..5666666666665 PP

>> Mei4  Meiosis-specific protein Mei4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.89     4e+03     226     244 ..      35      52 ..      16      61 .. 0.47
   2 ?   13.9   0.0   6.5e-06     0.029     230     316 ..     129     241 ..     125     256 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.89
        Mei4 226 skvrnfiirlLfseillkk 244
                    + ++++ L+s il kk
  CTQ28987.1  35 KYRETSVVKRLLSAIL-KK 52 
                 2333445555555555.33 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 6.5e-06
        Mei4 230 nfiirlLfseillkkaeidfkwLqsfadqLsdaadYknlcslvfilidsiineqLlkkkteqenepq................................ 296
                 + i ++ f++ +++   + +++++s++ ++s  ++    c+ +       +n +L k++t ++ +p                                 
  CTQ28987.1 129 RKIFKFYFNKFNFSIVGVTPPCVESIKSEISPEVK----CKFIPH----AVNVDLFKDETIKNIRPVnilyvgrlvcekgiyelasaikkldpeyrfti 219
                 56889*****************************9....655544....49************99989******************************* PP

        Mei4 297 ..sGveekeleklLkklkqvil 316
                   +G+ee +l+k+L++l++v +
  CTQ28987.1 220 vgTGTEEANLKKMLGQLDNVNF 241
                 ******************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2874.47
//
Query:       CTQ28988.1  [L=391]
Description: membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-20   72.3  55.4    4.1e-20   72.3  55.4    1.9  2  EpsG      EpsG family


Domain annotation for each model (and alignments):
>> EpsG  EpsG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   3.9      0.14   2.5e+03     166     191 ..      14      39 ..       2      54 .. 0.53
   2 !   72.3  55.4   2.3e-24   4.1e-20       3     324 ..      61     383 ..      57     385 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.14
        EpsG 166 llllllafillllllldlilsllsll 191
                 +++ll+a+++ ++l+++ +++l++ +
  CTQ28988.1  14 VIFLLVALLCSITLFISPLVGLYLTI 39 
                 34444444444444444444443333 PP

  == domain 2  score: 72.3 bits;  conditional E-value: 2.3e-24
        EpsG   3 lvlilililvllagfrygvGtDyf.tYveifesisnlsys...fdsnfEpgyvllnllvkslgfd..yqfflfilalitllllfvfikkyskn...... 89 
                 +v+ ++++ ++ +g+ +  G Dy+ +Y + +e  + + +    f+ ++E+g  l+ l+++ l+ +  y  +  ++++i  ++++++++++  +      
  CTQ28988.1  61 IVCMSVISASIQVGYGH--GDDYYnVYIPAYEAVNRGESIfsfFSGGVEFGLPLFFLILNKLFPGvnYIQLSGVITFIYSFIFILWVERFFLKyiedky 157
                 44455555555555555..88***9*******988777664555599***8888888888875542255555555555555555555555544555599 PP

        EpsG  90 ..lflslllfllslffllsmnqiRqglAiailllaliflikkkkikflllillAslfHsSa..iiflplyfllklklklkllllllafi.llllllldl 183
                   + l++ll   ++++l+ +  +Rq++A+ ++l++l ++ +k++ k + ++l+A+  H S+  ii l+++f++++k+ ++ ++l+++f  + +++l+ +
  CTQ28988.1 158 kgVALASLLV--FFNYLILVHLMRQSMASLFVLFSLGYFLEKNYRKGVVFFLVACICHLSSavIIPLFMIFFSNKKYLKISVVLFIIFAvISFKFLVGF 254
                 6644444444..555555589*************************************77746777777999997766555555555550555555555 PP

        EpsG 184 ilsllslllliseryesYlesdeysggtig..gvqlaillfilfllllkkileekkkeklklflnllliglallllllslsvilsRlslyflifqiill 280
                 i++    +      +++Y    ++++ ++   g ++++ +++lf  ll +++++ +    + +  l+++++  +l+l  ++ +++Rl   f++++  ++
  CTQ28988.1 255 IVAH-NIF-----GVATYKMAVYEDDVIETtaGAGFVLHFIVLF--LLSRFIRDGSY---ESYKSLIFYSCPAYLILTLIPFASDRL---FMPITG-FM 338
                 5554.433.....5566666666665555522555555555555..44444444444...567777777888888888887889999...888888.66 PP

        EpsG 281 ppllkklfkrkkrrlilliliillflflfvkllasga..seqvlpY 324
                 +  +  +f +k+ ++++ il++ ++++ f+ l  +++  +  +++Y
  CTQ28988.1 339 LGGIFFIFFKKY-ITVFRILLVAYCALRFFRLGPFAEniYGLWYNY 383
                 666666666664.448999999999998888876766666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1108  (0.0617993); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3011.04
//
Query:       CTQ28989.1  [L=24]
Description: hypothetical protein CH1034_250117 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (24 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       155  (0.00864521); expected 358.6 (0.02)
Passed bias filter:                       97  (0.00541023); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.23s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 195.61
//
Query:       CTQ28990.1  [L=51]
Description: hypothetical protein CH1034_250118 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 402.74
//
Query:       CTQ28991.1  [L=345]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-09   35.2   1.1    1.3e-08   34.6   1.1    1.2  1  Cellulase       Cellulase (glycosyl hydrolase family 5)
    7.2e-08   32.3   0.0    1.1e-07   31.7   0.0    1.2  1  Glyco_hydro_cc  Glycosyl hydrolase catalytic core
     0.0018   17.4   0.4     0.0024   16.9   0.4    1.1  1  Glyco_hydro_53  Glycosyl hydrolase family 53


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   1.1   2.2e-12   1.3e-08      23     265 ..      41     286 ..      23     305 .. 0.67

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 2.2e-12
                 HHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-..EEEEEEESS...TTTCSSSSTTTTHHH....HHHHHHHHHHHH CS
   Cellulase  23 tkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakengl..yvildiHse...egwltkadgnssedt....aeeffkklwtqi 112
                 ++al++e+ + + n +R  + w +   +++++    +   ++ee ++ a +n++   +il + ++   e    k + n+  +     a   f ++ ++ 
  CTQ28991.1  41 AEALHKEIEKLHANSIRTDYPWYQVE-KTKGI--YVTPNIEIEETLNKALSNKIipVIILGYGNPiyiE----KTKDNPRMKPigerAVTGFVNYAKWT 132
                 68899999999*********994444.44444..34455578888888888887333566677753332....222233322222225556999999** PP

                 HHHHTTTTTTEEEESSSS--STTCT.CCT..CHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHH........HHTBHHHHHCTSGSSSSTTEEEEEEE CS
   Cellulase 113 AerykkndevvifelmNEPhgnntg.aew..tseeadevkayaeeaikaIRavgpnrliivegns........wsgnldgavlndPndsqdnliysvHf 200
                 Ae++  n++ vife++NE+ +++   ++   ++ +    ++  +++ +aI++ +++  +i++++s        w  +l   +l++    +    +s+H+
  CTQ28991.1 133 AEHF--NNKDVIFEIWNEWVQGGGAgKKItlSKASIRSYTNIINKTCNAIKSNNNKAKVIIGSTSpfddrsnlWLRSLVT-NLDM----KCVDGISFHA 224
                 ****..8999*********996655533356677778888889999**********999999977766666665554444.4444....4566789999 PP

                 ETTTHHHTGCGSHSCTHHHHHHHHHHHHHH.HHHHTTS.EEEEEEEESSTTSSHHHHHHHHHHHHHH CS
   Cellulase 201 Ygpsdfaqtefgkdltdktnlaqrledaak.ylvekgi.pviigEfGgsnadgdlakeeaekwldyl 265
                 Y  +   ++ +    +++t+  ++l+++ + +l++++  p  ++E G+ +  +  a+ +++ ++dy+
  CTQ28991.1 225 YHYYPKIKKIS---AESVTDKLEELQKILQaSLKTNNTiPFYVTEIGVPSIAS--ARYDENDIADYF 286
                 99888766666...4555555666666554145555555********997777..444444444444 PP

>> Glyco_hydro_cc  Glycosyl hydrolase catalytic core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.8e-11   1.1e-07     104     218 ..     187     313 ..     161     334 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.8e-11
  Glyco_hydro_cc 104 kgvklvsPavaatnseegleWldeFleacskdc..kvdflavHwY.......kgdfeelkehieelheayn........kpiWvTEfalqs.esg 180
                      +v ++s ++    +++   Wl++ +++   +c   ++f+a H+Y           e +++++eel++  +         p +vTE+++ s  s+
      CTQ28991.1 187 AKVIIGSTSP---FDDRSNLWLRSLVTNLDMKCvdGISFHAYHYYpkikkisA---ESVTDKLEELQKILQaslktnntIPFYVTEIGVPSiASA 275
                     4444445554...3334466********99999999***********995551...4455555554444444444445899********997777 PP

  Glyco_hydro_cc 181 dasqeetkeflnevlawldsqeyVeryawfgfrsevsn 218
                     + ++++++++++++++ l+s+++++   w+  +++ +n
      CTQ28991.1 276 RYDENDIADYFERLIPLLKSKDFIKGVWWYDLIDDGNN 313
                     788888***********************994444443 PP

>> Glyco_hydro_53  Glycosyl hydrolase family 53
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.4   3.9e-07    0.0024     117     237 ..     127     252 ..     118     280 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.9e-07
  Glyco_hydro_53 117 dyTkdvlkklkeagvlp....elVqvGNEinsgllwsegkkenweklakllnsgikavkevstnikvviHlangedaaskkaifkklskag.vdf 206
                     +y k + +++++++v      e+Vq G    +++  s   k   + +++++n+  +a+k  ++++kv+i  +++ d  s+ ++ + +++ + +  
      CTQ28991.1 127 NYAKWTAEHFNNKDVIFeiwnEWVQGGGA-GKKITLS---KASIRSYTNIINKTCNAIKSNNNKAKVIIGSTSPFDDRSNLWLRSLVTNLDmKCV 217
                     56666666666665543111145664443.3334443...4455556699***************************887777777777774334 PP

  Glyco_hydro_53 207 Dvi...gvsYYpfwss.tleklksnlkdlasrygk 237
                     D i   +  YYp+ ++ + e+++++l++l++ +++
      CTQ28991.1 218 DGIsfhAYHYYPKIKKiSAESVTDKLEELQKILQA 252
                     54411267799988888889999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2683.45
//
Query:       CTQ28992.1  [L=321]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-21   76.1   0.4    4.6e-21   75.4   0.4    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
    5.4e-09   35.9   0.3      9e-09   35.2   0.3    1.5  1  Glyco_tranf_2_2  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.4   5.2e-25   4.6e-21       1     159 [.      11     167 ..      11     178 .. 0.84

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 5.2e-25
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      +v+ p+yN ++++  +++s l+  p+++f +i+++DgS+D+++e++ ++a+  +++ ++ +e n G ++a+n gl  ++ +y++f+D Dde+  
       CTQ28992.1  11 DVICPVYNKAHLIDGFITSFLNKLPKSNFNLILINDGSSDNLEEVISKYAH--DNIQLYNKE-NGGVSSARNMGLTISKAEYVWFCDPDDEIIA 101
                      699**********************************************95..999998888.66***************************99 PP

                      THHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS..EEEECCHCCCCHCCCCCCSTTCSTCCC CS
  Glycos_transf_2  95 dwleklvealekdgadvvlgqrprifgetdeiernkrv..generlyfkerkrslkgnlsfeigsaa 159
                      +  e++++ l k+ ad+ + +   ++ ++++i   k+   +  +   +  +    + n  + +  + 
       CTQ28992.1 102 N-GEDIIKLLYKEKADIYVFAYKESKLDSKKIYVKKNKadNKYNFSDYLLQYDYFGSNNGISTLWNK 167
                      6.8*****************99999999999999887666555555555555555555555555555 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.3     1e-12     9e-09      15      94 ..      23      99 ..      11     142 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1e-12
  Glyco_tranf_2_2 15 ieerv...lqkakyydeeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfi 94
                     i   +   l+k      +++li+++dgSs+++ e++s+  + n + y k++     + + arN G   +++++v F+D D+ i
       CTQ28992.1 23 IDGFItsfLNKLP--KSNFNLILINDGSSDNLEEVISKYAHDNIQLYNKEN----GGVSSARNMGLTISKAEYVWFCDPDDEI 99
                     5555532222222..579*****************************4444....688999*******************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1000  (0.0557756); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2501.97
//
Query:       CTQ28993.1  [L=330]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-23   82.8   0.0    3.3e-23   82.1   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
    7.5e-16   58.8   0.0    1.2e-15   58.1   0.0    1.3  1  Glyco_trans_1_4  Glycosyl transferases group 1
    1.3e-08   35.0   0.0    1.7e-07   31.4   0.0    2.1  2  Glyco_transf_4   Glycosyltransferase Family 4
    0.00086   19.7   0.0     0.0016   18.8   0.0    1.4  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   7.4e-27   3.3e-23      15     169 ..     157     305 ..     148     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 7.4e-27
                      -EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBSS-HH CS
  Glycos_transf_1  15 kkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEgfGiv 108
                       k++l+v++ + +K+    +  f++ k  ++p +k+v+ G  e +  +k++++ l+l+d+v f+g+++++ l++l+++a  +v+ s +EgfG++
       CTQ28993.1 157 FKFLLCVSNRKGHKNELGTLLGFQKAK--IDPTIKIVFTG--EPNTFIKSKIADLNLQDRVVFTGYLPEDYLPKLYRSAIGVVFVSFYEGFGLP 246
                      589999999999999999999999765..89*********..7889************************************************ PP

                      HHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHH CS
  Glycos_transf_1 109 llEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgena 169
                      ++EA a+g+pv++s  + + e+   g   +lv+pn++++++++i ++ +++ lrerl+ ++
       CTQ28993.1 247 VVEAQASGIPVVTSYGSSLEEI-GGGA-AYLVDPNSVDEISKGISEICNNSILRERLIPEG 305
                      ***********99866555555.5555.5***************************98765 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   2.8e-19   1.2e-15      31     134 .]     185     294 ..     160     294 .. 0.82

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 2.8e-19
                      H..EEEEEES---..HHHHHHHT..T-T.TEEEE---.TH.HHHHHHH-SEEEE--..---SHHHHHHHHTT-EEEE-TGGGTTT--TTSSEE- CS
  Glyco_trans_1_4  31 d..vrlvivGdgprpeeleelaa..gleerveftGfv.ed.laellaaadvfvaPs..egfglkllEamaaglpvVatdvggiaevvgengllv 116
                      d  +++v+ G +p+   +++++a  +l++rv+ftG++ ed l++l+++a  +v+ s  egfgl ++Ea a+g+pvV++  + ++e+ g +++lv
       CTQ28993.1 185 DptIKIVFTG-EPNT-FIKSKIAdlNLQDRVVFTGYLpEDyLPKLYRSAIGVVFVSfyEGFGLPVVEAQASGIPVVTSYGSSLEEIGGGAAYLV 276
                      2458899999.4453.777777558999*********8779********988998899********************9878888558899*** PP

                      -TT-HHHHHHHHHHHHH- CS
  Glyco_trans_1_4 117 ppgdpealaeailrLled 134
                      +p++++++ + i ++ ++
       CTQ28993.1 277 DPNSVDEISKGISEICNN 294
                      ***********9998765 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   3.7e-11   1.7e-07      81     168 ..      65     144 ..      15     146 .. 0.80
   2 ?    1.3   0.0     0.065   2.9e+02      72     103 ..     231     261 ..     210     285 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 3.7e-11
  Glyco_transf_4  81 paalgaallalrrrlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDl 168
                     +++ ++        +++p+V+t+H+l +  + ++ +  ++++++ + +  ++ra+ +++vS++ + +++e+ gv+++k+  + nGv +
      CTQ28993.1  65 YIPPLY--------SKKPFVFTIHDLNHLDRNENSSISKKIFYNTVIKNGCSRANYIFTVSDFSKTRIIEWSGVDENKVINVGNGVSP 144
                     333333........589**********87777777777888888888888************************************86 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.065
  Glyco_transf_4  72 kpDvvHahspaalgaallalrrrlgiplVltv 103
                      + vv + ++  +g+ ++ + + +gip+V+++
      CTQ28993.1 231 AIGVVFVSFYEGFGLPVVEAQA-SGIPVVTSY 261
                     5668888888888888888887.9*****998 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.6e-07    0.0016       5      90 ..     237     321 ..     226     323 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.6e-07
  Glyco_trans_1_2   5 psrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiryllanpeerraiaeaarervlaehtydhraeql 90 
                      +s +e++ l ++Ea a+G++++t++ ++lee+      + l++  +++e+ + i +  +n  +r+++  +++    +++++++ a+q+
       CTQ28993.1 237 VSFYEGFGLPVVEAQASGIPVVTSYGSSLEEIGG--GAAYLVDpnSVDEISKGISEICNNSILRERLIPEGIIN-SKRFDWNKTARQV 321
                      55568999****************99******74..455555567*****************************.99******99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2662.30
//
Query:       CTQ28994.1  [L=44]
Description: hypothetical protein CH1034_250122 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 365.39
//
Query:       CTQ28995.1  [L=722]
Description: cryptic autophosphorylating protein tyrosine kinase Etk [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-34  117.4   1.0    6.2e-34  115.8   1.0    1.9  1  GNVR         G-rich domain on putative tyrosine kinase
    1.8e-24   85.9   0.1    1.8e-24   85.9   0.1    2.3  2  Wzz          Chain length determinant protein
    7.7e-09   35.7   1.7    6.7e-08   32.6   0.1    3.0  2  AAA_31       AAA domain
    1.6e-05   24.9   0.0    5.7e-05   23.2   0.0    2.0  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    0.00011   22.1   0.4       0.63    9.8   0.1    2.7  2  AAA_26       AAA domain
    0.00037   20.0   0.6     0.0013   18.2   0.6    2.0  1  ParA         NUBPL iron-transfer P-loop NTPase
    0.00073   19.2   0.0     0.0019   17.8   0.0    1.7  1  AAA_25       AAA domain
     0.0056   16.0   3.1      0.026   13.9   0.0    2.3  2  DnaB_C       DnaB-like helicase C terminal domain
     0.0083   15.4   0.0      0.022   14.1   0.0    1.6  1  MipZ         ATPase MipZ
  ------ inclusion threshold ------
      0.023   13.9   3.7         12    4.9   0.0    3.9  4  ArsA_ATPase  Anion-transporting ATPase
      0.035   13.0   0.3      0.058   12.3   0.3    1.3  1  LMBR1        LMBR1-like membrane protein
       0.04   13.2   0.2       0.19   11.0   0.0    2.1  2  Zeta_toxin   Zeta toxin
      0.051   13.0   0.0       0.14   11.6   0.0    1.7  1  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
       0.06   13.1   0.2       0.17   11.6   0.0    1.8  2  IstB_IS21    IstB-like ATP binding protein
        1.1    9.3   4.7       0.29   11.2   0.6    2.1  3  T2SSM        Type II secretion system (T2SS), protein M
        2.1    8.7   7.9       0.39   11.0   2.7    2.4  2  Tup_N        Tup N-terminal


Domain annotation for each model (and alignments):
>> GNVR  G-rich domain on putative tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8   1.0   5.5e-37   6.2e-34       2      81 ..     368     447 ..     367     448 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.8 bits;  conditional E-value: 5.5e-37
        GNVR   2 tqqeilrLtrDvevnteiYtqLlnkaqelevakagtvgnVrivDeavvpekpvkPkkalivvlalllGlllgvalvllrr 81 
                 tqqe+lrL+rDve+++++Y qLln++qel++ak++++gnVri+D+av+++kpvkPkk l+v+++l++Gl+++v+lvllr 
  CTQ28995.1 368 TQQEVLRLSRDVESGRAVYLQLLNRQQELNIAKSSAIGNVRIIDNAVTETKPVKPKKILVVAIGLIFGLFVSVGLVLLRV 447
                 9*****************************************************************************96 PP

>> Wzz  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.1   1.6e-27   1.8e-24       1      92 []      15     106 ..      15     106 .. 0.93
   2 ?   -2.4   0.4       5.5   6.1e+03      17      33 ..     425     438 ..     420     444 .. 0.57

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 1.6e-27
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EEEEEEEES--CHHHHH.HHHHCCHHHHHHHHHH.HHHHHHHSSSS--EEEEE. CS
         Wzz   1 eeiDLieLlsvLwkrkklIilvtllfallaviyaflatpkYtataqilvpekkqvea.ssltaqdvqanlqlas.teieilkSrdvlekvisel 92 
                 +e+DL +L+++L++++klIi+vt  f++lav+ya+latp+Y+a+a+++v++k++++  ssl+  ++++n+q++s  ei +l+Sr+vl+k++++l
  CTQ28995.1  15 DEMDLGRLFGELIDHRKLIIAVTTGFTVLAVLYALLATPIYQADALVQVEQKQGNAIlSSLS--QMLPNSQPQSaPEIALLQSRMVLGKTVDDL 106
                 79****************************************************63334444..**********99***************986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.5
                 XXXXXXXXXXXXXXXXX CS
         Wzz  17 klIilvtllfallaviy 33 
                 +l++++ l+f   ++++
  CTQ28995.1 425 ILVVAIGLIF---GLFV 438
                 4555555554...4444 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2       1.5   1.6e+03      35      83 ..     313     344 ..     295     418 .. 0.64
   2 !   32.6   0.1     6e-11   6.7e-08      14     132 ..     537     648 ..     534     663 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.5
      AAA_31  35 lvDlDpQanattglgiekneiektlyevlieeknikeaiiktkvenldl 83 
                 +v++D Q n  t                 ++e++i+++++k++ +   l
  CTQ28995.1 313 IVNVDNQLNELT-----------------FREAEISQLYTKEHPTYKAL 344
                 455555555444.................33333333333332222222 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 6e-11
      AAA_31  14 GKTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielvelekkeeilkelle 112
                 GKT  s nlaa++a +gkkvL +D+D  +    ++    ++  + l evl  ++ ++++i + +    d i   + +     el+     + +++ ll+
  CTQ28995.1 537 GKTFISSNLAATIALTGKKVLFIDADLRKGYVHKML--GRKQGQGLSEVLSGQVAVEKVIEHVDDAAFDYIGRGL-IPPNPAELL----MHPRFEALLK 628
                 9**************************999888554..4555689****99**********77766666665443.233344442....2556788999 PP

      AAA_31 113 kvkdeYDyiiiDcpPsLgll 132
                   +++YD+++iD+pP L + 
  CTQ28995.1 629 WGSQNYDLVVIDTPPILAVT 648
                 ***************99875 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     5e-08   5.7e-05       2      39 ..     528     565 ..     527     696 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 5e-08
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   2 aiastkGGvGKTtlaanLaralarrglrVllvDaDpqa 39 
                 +i + + ++GKT+++ nLa+ +a  g++Vl +DaD   
  CTQ28995.1 528 MISGASPNAGKTFISSNLAATIALTGKKVLFIDADLRK 565
                 556666689**************************874 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   0.00057      0.63       3      33 ..     527     557 ..     525     559 .. 0.87
   2 !    9.5   0.0   0.00073      0.82     119     170 ..     648     699 ..     636     712 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00057
      AAA_26   3 ifvtgtdtgvGKTvvslgLvralkrkgvkvg 33 
                 ++++g ++++GKT++s  L++ +  +g kv 
  CTQ28995.1 527 LMISGASPNAGKTFISSNLAATIALTGKKVL 557
                 9*******************99987777775 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00073
      AAA_26 119 lnadiaknlgapvilVargglgtinqllltiealrqknvrvlGvilNkvrnp 170
                 ++a i+ +     ++Var + +t++ + ++++ + q +v v+G ilN+v ++
  CTQ28995.1 648 TDAAIIGRYAGTSLMVARFEVNTVKEIEVSMKRFEQSGVVVKGCILNGVVKK 699
                 667777777777899*********************************8665 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.6   1.2e-06    0.0013       5     121 ..     526     643 ..     521     695 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.2e-06
        ParA   5 viavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeekpeqs.ekkliPvea..kgikvmSigfllesedeavvwrGpmkskai 100
                 v++++ +    GK+ +++nlA+++a +g+kv  +DaD+    + ++lg ++ +  ++  ++ + ve+  +++    ++++     + ++   p    + 
  CTQ28995.1 526 VLMISGASPNAGKTFISSNLAATIALTGKKVLFIDADLRKGYVHKMLGRKQGQGLSEvLSGQVAVEKviEHVDDAAFDYIG----RGLIPPNPAELLMH 620
                 44454455678****************************99*******998654444333334444334444444444443....47777777777777 PP

        ParA 101 kqllkdvewg..elDyLiiDlPP 121
                  ++ +  +wg  + D+++iD+PP
  CTQ28995.1 621 PRFEALLKWGsqNYDLVVIDTPP 643
                 78888888873357889999999 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.7e-06    0.0019      33     150 ..     525     641 ..     495     642 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.7e-06
      AAA_25  33 gelallaGapgtGKttlaldlalava.tGkpwlgpvapeqgkVlyvsaEdsedelrrRlra.vgeal..............rddarllvldlagveslp 115
                 + l +  + p +GKt++ ++la+++a tGk           kVl+++a+ +   +++ l + +g+ l              ++ ++ ++ ++ +     
  CTQ28995.1 525 NVLMISGASPNAGKTFISSNLAATIAlTGK-----------KVLFIDADLRKGYVHKMLGRkQGQGLsevlsgqvavekviEHVDDAAFDYIGRG---- 608
                 677888999*****************8888...........788888888887777777663445557777777776666766666666666443.... PP

      AAA_25 116 LfakdrggtlltadvdaleaaieevegvrlvviDp 150
                 L+ +   + l  + ++al ++  +  +++lvviD+
  CTQ28995.1 609 LIPPNPAELLMHPRFEALLKWGSQ--NYDLVVIDT 641
                 333333444489999999999888..489999997 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   2.3       0.3   3.3e+02      38     145 ..     284     394 ..     278     409 .. 0.60
   2 !   13.9   0.0   2.3e-05     0.026      16      90 ..     522     595 ..     509     641 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.3
                 HHHHHHHHCSTSEEEEEESSSXHHHHHHHHHHHHHTXXHHHHHHTTSXHHHHHHHHHHHHHHHHSEEEEEEXSSX..CHHHH...HHHHHHHHHHTTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx...xxxxxxxxxxxxxx RF
      DnaB_C  38 niaenaavkeklpvavfslemsaeqlvqRllsseaeidskklrtgklkeedweklteaieelseaklfiddtpal..tvsei...rskarrlkkekglg 131
                 +iae   + ++++   + l+m+a++++++++  + ++++ ++r++++++  +++  +  + +++ +++ +++++l   vs +   ++++ rl+++ + g
  CTQ28995.1 284 DIAEDKLNAYRKQKDSVDLNMEAKSVLDQIVNVDNQLNELTFREAEISQLYTKEHPTYKALMEKRHILQEEKTKLnkRVSGMpatQQEVLRLSRDVESG 382
                 5666666666666777899*******************9999999888744443333333333344444444333112222211155555565554444 PP

                 EEEEEEGGGTBTSC CS
                 xxxxxxxxxxxxxx RF
      DnaB_C 132 liviDyLqlmegse 145
                   v  yLql++ ++
  CTQ28995.1 383 RAV--YLQLLNRQQ 394
                 443..888888544 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.3e-05
                 BXTTXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEEESSSXHHHHHHHHHHHHHTXXHHHHHHTTSX.HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
      DnaB_C  16 lqkgdliiiAarpsmGktalalniaenaavkeklpvavfslemsaeqlvqRllsseaeidskklrtgklk.eedwe 90 
                  +++ l+i +a p  Gkt +  n+a+++a +  ++v+++  +  +   v+++l  +++  ++++ +g++  e+ +e
  CTQ28995.1 522 AKNNVLMISGASPNAGKTFISSNLAATIALT-GKKVLFIDADLRK-GYVHKMLGRKQGQGLSEVLSGQVAvEKVIE 595
                 5677899**********************85.559*****99876.678999999999999999999987444444 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.9e-05     0.022      12     108 ..     536     642 ..     526     649 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-05
                 SSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT------EEE-SSS-HHHHTT.........S-HHH.HHHHHHHHHHHHHHH- CS
        MipZ  12 sGksttavhvavaLlkkGarvaaidldlrqrtlarylenraataerkglsLplpealalseaeeaeve.........eeeea.evaeleelvadleael 100
                 +Gk+ ++  +a +++ +G++v  id dlr+  +++ l+ ++ +  ++ ls +++   ++++++ a  +         +++e     ++e+l++  ++++
  CTQ28995.1 536 AGKTFISSNLAATIALTGKKVLFIDADLRKGYVHKMLGRKQGQGLSEVLSGQVAVEKVIEHVDDAAFDyigrglippNPAELlMHPRFEALLKWGSQNY 634
                 89*************************************99999999999999888888877766432111111111333331346999********** PP

                 SEEEEE-- CS
        MipZ 101 dfividtP 108
                 d++vidtP
  CTQ28995.1 635 DLVVIDTP 642
                 *******9 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.88   9.8e+02      88     157 ..     300     315 ..     248     369 .. 0.58
   2 ?    4.9   0.0     0.011        12      12      38 ..     536     562 ..     524     564 .. 0.84
   3 ?    3.6   0.0     0.028        31     121     134 ..     628     643 ..     611     646 .. 0.77
   4 ?    3.5   0.0     0.031        34     208     248 ..     659     699 ..     647     703 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.88
                  HHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHHCSSSSEEEEESBSCCHTCGGGGHHHHHHHHHHHHHH CS
  ArsA_ATPase  88 lgleeledvlaeelaslPGideilsfeellkyvkeeeydvvvlDtaPTGhtlrllslpevleklleklvk 157
                  + l+++ +                                                      ++l+++v+
   CTQ28995.1 300 VDLNMEAK------------------------------------------------------SVLDQIVN 315
                  44444333......................................................33333333 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.011
                  SSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase  12 VGKttvsaatavklsekgkkvllistD 38 
                   GKt +s+ +a+ ++ +gkkvl i  D
   CTQ28995.1 536 AGKTFISSNLAATIALTGKKVLFIDAD 562
                  6*********************99877 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.028
                  H..CSSSSEEEEESBS CS
  ArsA_ATPase 121 k..eeeydvvvlDtaP 134
                  k  +++yd vv+Dt+P
   CTQ28995.1 628 KwgSQNYDLVVIDTPP 643
                  34489**********9 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.031
                  EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEEE-TT CS
  ArsA_ATPase 208 sfrlVvipEklslkEteRaikeLkkygikvdavivNkllpe 248
                  +  +V   E  ++kE+e ++k +++ g+ v+  i N ++  
   CTQ28995.1 659 TSLMVARFEVNTVKEIEVSMKRFEQSGVVVKGCILNGVVKK 699
                  55689999****************************99765 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   5.2e-05     0.058     195     314 ..     262     405 ..     218     449 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.2e-05
       LMBR1 195 ksdldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklks.........nenkteeslaklekqlika. 283
                 +++  + l+ l+++++k++++++ ae++l+ + k+   ++ +++ ++    +l++i++ v ++++e + +         +e++t+++l + ++ l+++ 
  CTQ28995.1 262 AAQDAKSLDFLNMQLPKVRSDLDIAEDKLNAYRKQKDSVDLNMEAKS----VLDQIVN-VDNQLNELTFReaeisqlytKEHPTYKALMEKRHILQEEk 355
                 566677899999******************77766666666665555....8888888.4443444443355555566555556666666666666652 PP

       LMBR1 284 ....................lqkrertekqwkrllekalelediiknkssk 314
                                     +++ e  ++ + +ll+++ el +i+k+++  
  CTQ28995.1 356 tklnkrvsgmpatqqevlrlSRDVESGRAVYLQLLNRQQEL-NIAKSSAIG 405
                 22222222222222222222444444444444455544222.444444444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.83   9.3e+02      55      76 ..     335     356 ..     332     370 .. 0.77
   2 ?   11.0   0.0   0.00017      0.19      14      58 ..     523     568 ..     513     605 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.83
  Zeta_toxin  55 RelhPeyeeilkadpkkaselt 76 
                  + hP y+++++++     e t
  CTQ28995.1 335 TKEHPTYKALMEKRHILQEEKT 356
                 578********99876655555 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00017
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelh 58 
                 ++ +l++ g++p AGK+ +++ l++ ++ ++++v+ +d+D  + + 
  CTQ28995.1 523 KNNVLMISGASPNAGKTFISSNLAATIAlTGKKVLFIDADLRKGYV 568
                 6668888899*****************9999999999999877766 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00012      0.14      11      69 ..     536     594 ..     528     606 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
   Fer4_NifH  11 iGksttsqnlsaalaemgkkvlivGCDPkaDstrlllggkaqetvldtlrekgavedvk 69 
                  Gk++ s+nl+a++a +gkkvl +  D ++   + +lg k+ + + ++l  + ave+v 
  CTQ28995.1 536 AGKTFISSNLAATIALTGKKVLFIDADLRKGYVHKMLGRKQGQGLSEVLSGQVAVEKVI 594
                 69**************************************9999999999999888874 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.9   3.3e+03      61     105 ..     252     298 ..     249     315 .. 0.73
   2 ?   11.6   0.0   0.00016      0.17       6      83 ..     479     561 ..     476     602 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.9
   IstB_IS21  61 shlaialgveavraglsvlfvrv..edLveelkrarrdgklaralkr 105
                  +la  + ++a+++ +s  f+ +  +++ + l +a+++ ++ r++k 
  CTQ28995.1 252 NYLAQNIDRQAAQDAKSLDFLNMqlPKVRSDLDIAEDKLNAYRKQKD 298
                 58889999999998888888654115777788888777777776665 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00016
   IstB_IS21   6 trlrlaklpaqktledidfraarsldkrkvkeLat.lsf..iekkenivll.G.psGvGKshlaialgveavraglsvlfvrv 83 
                 ++++++kl++++    ++ ++  +l  +++++L+t l+f  +e+k+n++++ G  + +GK++++  l+   + +g++vlf+ +
  CTQ28995.1 479 NNRKSSKLRKNQSDTLLALDNPADLAVEAIRSLRTsLHFamMEAKNNVLMIsGaSPNAGKTFISSNLAATIALTGKKVLFIDA 561
                 6678889987777777888888889999999995424543378888887763524689**********************976 PP

>> T2SSM  Type II secretion system (T2SS), protein M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.6   0.00026      0.29      16      97 ..      31     109 ..      23     115 .. 0.78
   2 ?   -2.6   0.1       4.4   4.9e+03      49      69 ..     275     295 ..     254     336 .. 0.54
   3 ?   -3.1   0.1       6.4   7.2e+03      52      77 ..     315     340 ..     302     397 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHHCT-- CS
       T2SSM  16 rrllaalglvlllallylllwqPlserieraqaelqklraqlawveeqaaevralraapasalsgaaleqvvtrsarqagLa 97 
                 + ++a++  + +la+ly ll +P+ ++ +  q e ++  a l+ + + +++ +  + ap+ al   + + v+ ++ ++ +L+
  CTQ28995.1  31 KLIIAVTTGFTVLAVLYALLATPIYQADALVQVEQKQGNAILSSLSQMLPNSQPQS-APEIALL--QSRMVLGKTVDDLNLQ 109
                 56899*****************************9999999999999999776333.4444333..4455666666666665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.4
                 XXXXXXXXXXXXXXXXXXXXX CS
       T2SSM  49 elqklraqlawveeqaaevra 69 
                 +l+k r++l+  e++++ +r+
  CTQ28995.1 275 QLPKVRSDLDIAEDKLNAYRK 295
                 334444444444444443333 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 6.4
                 XXXXXXXXXXXXXXXXXXXXXXXXXX CS
       T2SSM  52 klraqlawveeqaaevralraapasa 77 
                 +  +ql +++ + ae+ +l  +++++
  CTQ28995.1 315 NVDNQLNELTFREAEISQLYTKEHPT 340
                 55555555555555555555333333 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.7   0.00035      0.39       6      76 ..     276     348 ..     272     349 .. 0.89
   2 ?   -1.1   0.2       2.2   2.4e+03      32      62 ..     356     386 ..     351     398 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00035
       Tup_N   6 LdavkqEfdalsqeasslkaqkdeyelk..iqsqiqElqqirqtlyeLeeahrkikqqYEeeiarLkaeLesr 76 
                 L  v+++ d ++ +++ +++qkd ++l    +s ++ + ++ ++l eL  +  +i q Y +e    ka +e+r
  CTQ28995.1 276 LPKVRSDLDIAEDKLNAYRKQKDSVDLNmeAKSVLDQIVNVDNQLNELTFREAEISQLYTKEHPTYKALMEKR 348
                 6679*******************8888744678899**************************99999998887 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.2
       Tup_N  32 lkiqsqiqElqqirqtlyeLeeahrkikqqY 62 
                 +k+++ ++ + + +q++  L +  ++ +  Y
  CTQ28995.1 356 TKLNKRVSGMPATQQEVLRLSRDVESGRAVY 386
                 6899999999999999999999888877777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       851  (0.047465); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 5079.95
//
Query:       CTQ28996.1  [L=144]
Description: phosphotyrosine-protein phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-39  133.8   0.0      6e-39  133.7   0.0    1.0  1  LMWPc     Low molecular weight phosphotyrosine protein phosph


Domain annotation for each model (and alignments):
>> LMWPc  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.7   0.0   3.3e-43     6e-39       1     142 []       5     139 ..       5     139 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.7 bits;  conditional E-value: 3.3e-43
                 EEEEESSSSSHHHHHHHHHHHHHHHTT-CCCEEEEEEESTSTTT-B--HHHHHHHHHTTS--TT-BB-BS-HHHHHHSSEEEESSHHHHHHHHHHCCTT CS
       LMWPc   1 vlfvClgNicRSpmAealfrkelekagleekvevdSaGtgalvgkradpravevlkekgislsghvarqlskeelaelDlilamdeenkreleslapek 99 
                 +l+vC+gNicRSp+ e+l+r+ l+++      ++dSaG+galv++ ad +a+ +++++g+sl+gh++rq++ +   ++Dl+l+m++++++++ ++ape 
  CTQ28996.1   5 ILVVCTGNICRSPIGERLLRRALPNK------KIDSAGVGALVNHAADASAIRTAAKHGLSLEGHKGRQFTSSLGGQYDLVLVMEHSHLEQVSRIAPE- 96 
                 89**********************98......9*****************************************************************. PP

                 GGGGEEEGGGGSSTSS---HTTSSHHHHHHHHHHHHHHHHHHH CS
       LMWPc 100 ekakvkllgeyteqldieDPyygeieafeevldeieeavkkll 142
                  ++k++l+g++   ++i+DPy++++eaf  v++ i  a+++++
  CTQ28996.1  97 VRGKTMLFGHWLGGKEIPDPYRKSDEAFDSVYQLIDLASQHWV 139
                 99**********************************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1146.02
//
Query:       CTQ28997.1  [L=378]
Description: putative exopolysaccharide export protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-29  100.6   0.2    2.1e-28   98.4   0.1    2.2  3  Poly_export  Polysaccharide biosynthesis/export protein
    1.3e-17   63.2   0.3    2.6e-17   62.2   0.3    1.5  1  Wza_C        Outer-membrane lipoprotein Wza C-terminal domain
    2.8e-14   52.7   0.2    1.5e-07   31.2   0.0    2.7  2  SLBB         SLBB domain


Domain annotation for each model (and alignments):
>> Poly_export  Polysaccharide biosynthesis/export protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.1   3.5e-32   2.1e-28       4      81 ..      82     165 ..      80     166 .. 0.97
   2 ?   -2.2   0.0      0.86   5.1e+03      12      19 ..     252     259 ..     236     284 .. 0.55
   3 ?   -2.2   0.0      0.86   5.1e+03       6      19 ..     331     344 ..     329     349 .. 0.85

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 3.5e-32
  Poly_export   4 eseyrigpgDvLsItvwehpels......ssqalqgylVdpdGtIslPllGkikvaGltveelreeieeklskylkdpqvtVrv 81 
                  ++eyrig gDvL +tvw+hpel+       s++ +g  V++dGtI++P++Gk++vaG+t++++r+ei+++l +y+++pqv+V+v
   CTQ28997.1  82 SYEYRIGVGDVLMVTVWDHPELTtpagqyRSASDTGNWVNSDGTIFYPYIGKVQVAGKTLSQVRQEIASRLTTYIESPQVDVSV 165
                  699**************************778999************************************99*********98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.86
  Poly_export  12 gDvLsItv 19 
                  +D L++ v
   CTQ28997.1 252 NDDLKVFV 259
                  33444444 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.86
  Poly_export   6 eyrigpgDvLsItv 19 
                  e +++p D++ +t 
   CTQ28997.1 331 EFQLQPYDIVYVTT 344
                  6789*****99985 PP

>> Wza_C  Outer-membrane lipoprotein Wza C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.3   4.4e-21   2.6e-17       1      30 []     345     374 ..     345     374 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 4.4e-21
       Wza_C   1 APiaRWNRVIsQLLPTItgvndlteaalrI 30 
                 AP++RWNRV+sQL+PTItgv+d+te+a+ I
  CTQ28997.1 345 APLVRWNRVVSQLVPTITGVHDMTETARFI 374
                 9**************************977 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   2.4e-11   1.5e-07       2      53 ..     173     220 ..     172     225 .. 0.91
   2 !   19.0   0.1   1.5e-07   0.00092       1      53 [.     256     308 ..     256     313 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 2.4e-11
                 EEEESSBSS-EEEEEET.T-BHHHHHHTTT-SBSS.........-EEEE-SSS CS
        SLBB   2 VtVtGeVkrPgnyevpi.gttlsdlieqaGGltddadlksvnLarlavipgGp 53 
                  +VtGeV++ g  +++   +t++d+i++aGGl  dad+++v+L+      +G+
  CTQ28997.1 173 AYVTGEVAKSGQQPITNiPLTVMDAINAAGGLSADADWRNVVLTH-----NGK 220
                 69**************99*************************98.....555 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.5e-07
                 EEEEESSBSS-EEEEEET.T-BHHHHHHTTT-SBSS..........-E.EEE-SSS CS
        SLBB   1 vVtVtGeVkrPgnyevpi.gttlsdlieqaGGltdd.adlksvnLarl.avipgGp 53 
                 +V V GeV +  + ++   g+tl++++ +a Gl +   d++ +++ r+ +   g +
  CTQ28997.1 256 KVFVMGEVGKQSTMKMDRsGMTLAEALGNADGLSQSmSDATGIFVVRQlK---GNK 308
                 599*************988****************************877...655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2851.61
//
Query:       CTQ28998.1  [L=477]
Description: Uncharacterized 55.8 kDa protein in cps region [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-106  356.9  19.7   1.8e-106  356.6  19.7    1.1  1  Caps_assemb_Wzi  Capsule assembly protein Wzi


Domain annotation for each model (and alignments):
>> Caps_assemb_Wzi  Capsule assembly protein Wzi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.6  19.7  9.8e-111  1.8e-106       7     390 ..      91     466 ..      85     469 .. 0.97

  Alignments for each domain:
  == domain 1  score: 356.6 bits;  conditional E-value: 9.8e-111
  Caps_assemb_Wzi   7 gtsvqrdgatdrallendfGrdyregfnlsvgleaeaylgerfalylrgelqqepea.destfrleeaYvavrlgnweleaGkdsqwwGpgrsG 99 
                        +v+ +++td+++ ++ fG+++ + ++l++ ++   ++ge+++++l+g+++  +++ ++s+f+ + aY av+++n++l++G+++qwwGpg++G
       CTQ28998.1  91 DFRVTGYTSTDQPGTPQGFGQTQPADNSLGLAFN---NSGEWWDVHLQGNVEGGERIsNGSRFNANGAYGAVKFWNQWLSFGQVPQWWGPGYEG 181
                      56788999**************************...**************99999889*********************************** PP

  Caps_assemb_Wzi 100 slilSnNArpipqlrlsr.npepfelpwlswlGpwkytffagrleghravpdapwlhgerlsfkptpnlelGlsrtaqfGGeGqppsfsdflkv 192
                      sli+++++rp++++ ++r +++++e++wl+w+Gpw+y+++a+++++++avp+a+ ++g r++f+p+++lelG+sr++q+GGeG+p+sfs+f+++
       CTQ28998.1 182 SLIRGDAMRPMTGFLMQRaEQAAPETWWLRWVGPWQYQISASQMNQYTAVPHAK-IIGGRFTFSPFQSLELGASRIMQWGGEGRPQSFSSFWDG 274
                      ******************************************************.*************************************** PP

  Caps_assemb_Wzi 193 lfglgdsstnagdqtdpgnqlggfDlryrlpll.rnpvtlYgesigeDesglllpiraaylaGlylprltklgktdlrvEyadtdvirdeatgk 285
                      ++g++    n g++++pgnql+gfD++++l++  ++pv++Yg++igeDesg +lp+ +++l G++ ++++++   +++ E+ dt   r++  ++
       CTQ28998.1 275 FTGKD----NTGTDNEPGNQLAGFDFKFKLEPTlGWPVSFYGQMIGEDESG-YLPSANMFLGGVEGHHGWGKDAVNWYLEAHDT---RTNMSRT 360
                      ***99....*********************9999*****************.********************************...99999** PP

  Caps_assemb_Wzi 286 nfyYehgtykdGytykglplGstiggdaedfqlrvthwlsnrnrlslelryaklnkdgrsw.aplpleedsnalelsatlplkggislsaslav 378
                      n++Y+h++ykdGy+++g+plG+++ggd++ ++ +++   ++++r+s +l yak+n ++++  +++p++++++ ++l+++ ++++ + ls+sl++
       CTQ28998.1 361 NYSYTHHIYKDGYYQQGYPLGDAMGGDGQLIAGKIELITEDNERWSTRLVYAKVNPENQPInKAFPHADTLKGVQLGWSGDVYQSVRLSTSLWY 454
                      **********************************************************9667******************************** PP

  Caps_assemb_Wzi 379 ervklpnldegt 390
                       + ++ + d+  
       CTQ28998.1 455 TNANNSDSDDVG 466
                      *****9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3387.85
//
Query:       CTQ28999.1  [L=209]
Description: Uncharacterized 22.5 kDa protein in cps region [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-10   41.0   9.0    1.5e-10   41.0   9.0    2.1  2  PAP2      PAP2 superfamily


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.6     0.054   9.6e+02      63      97 ..      20      50 ..      15      64 .. 0.48
   2 !   41.0   9.0   8.1e-15   1.5e-10      51     131 ..      66     146 ..      51     151 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.054
        PAP2 63 fafalalllalllrrkrkkiglvllalillllavl 97
                +a++++l+l  + r + ++    + +l+ ++ a++
  CTQ28999.1 20 AALFIVLMLRKTSRLLAWQ----WSLLFGITGAIV 50
                3333333333333333333....444444444443 PP

  == domain 2  score: 41.0 bits;  conditional E-value: 8.1e-15
        PAP2  51 eakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvalsRlylgvHflsDvlaGlliGialaalayrlv 131
                 e ++   SgHsa ++a++ ++ +ll+ +++   +++++   ++la++v++sRl++++H +s v+aGll+G+a  al+  l 
  CTQ28999.1  66 ELDYTGFSGHSALSAAFWPIFLWLLCARFSVGLRKAAVITGYVLAAVVGYSRLVIHAHSVSEVIAGLLLGAAGSALFLVLQ 146
                 5556668***********************9669*************************************9988876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1586.31
//
Query:       CTQ29000.1  [L=298]
Description: putative subunit with GalU [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-21   75.4   0.0    6.3e-21   75.1   0.0    1.1  1  NTP_transferase  Nucleotidyl transferase
    7.5e-07   29.6   0.0    1.5e-06   28.7   0.0    1.5  1  NTP_transf_3     MobA-like NTP transferase domain
  ------ inclusion threshold ------
       0.02   14.8   0.0       0.06   13.3   0.0    1.7  2  CTP_transf_3     Cytidylyltransferase
       0.23   11.5   0.7       0.55   10.3   0.7    1.6  1  EFP_N            Elongation factor P (EF-P) KOW-like domain


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   1.4e-24   6.3e-21       1     242 [.       7     275 ..       7     280 .. 0.88

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 1.4e-24
                      EEEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT...................... CS
  NTP_transferase   1 kavILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg...................... 72 
                      kavI + G G  + P t++++k ++p+++k ++iq+ + +++++gi+e iv +t+  +  ve+++ + ++++                      
       CTQ29000.1   7 KAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKE-IVLVTHSSKNAVENHFDTSYELEalleqrvkrqllaevqaicppg 98 
                      689999************************.*****************.77788899999********************************** PP

                      SEEEEEEESS--BGGHHHHHTHHHHTTSSE..EEEEETTEEEEST........THHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEEC.... CS
  NTP_transferase  73 vevlialepegkgtAdAvalaaelledeksdelvlvLggDhlikd........ayeeavkkaiekaakgtvtfgivpveeateyGviead.... 154
                      v++  + + ++ g+ ++++ a+ +++d+     v+vL++ +l +         ++ ++++++ e+++    +++     + +ey vi+++    
       CTQ29000.1  99 VTIMNVRQAQPLGLGHSILCARPVVGDNPF---VVVLPDIIL-DGgtadplryNLAAMIARFNETGR--SQVLAKRMPGDLSEYSVIQTKepmv 186
                      9***************************96...888886444.333555777799999999999999..5555555557889********8888 PP

                      .TTS...BEEEEECS-SSHSH..CSEECCSEEEEETTHHHHHHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHHH CS
  NTP_transferase 155 .eeg...rverfvEKPkeaka..selassGiYvfnsevllflakdleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldsllean 242
                       e g   r+ +f+EKP+e++   s+l++ G Yv   ++  +l +  e+ + g+ ++td++ ++ ++++v+ a+l+++++   D G+   +++a 
       CTQ29000.1 187 aE-GqvaRIVEFIEKPDEPQTldSDLMAVGRYVLSADIWAEL-ERTEPGAWGRIQLTDAIAELAKKQSVD-AMLMTGES--YDCGKKMGYMQAF 275
                      62.34679************999******************9.77*******************999999.56888876..8999988888775 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   3.2e-10   1.5e-06       2      98 ..       9     137 ..       8     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 3.2e-10
                   EEEEESS-TTT....TT.THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHC..HHHH.........................HHTTCTS-EEE-T CS
  NTP_transf_3   2 viLAGGrSsRm....gg.dKallplggkpllervldalraagvdevvvvggde..evla.........................alarlgvrvvede 66 
                   vi  +G +  m    +  +K +lp+ +kp++++++d + aag++e+v+v+ ++  +v++                         a+ ++gv++++ +
    CTQ29000.1   9 VIPVAGLGMHMlpatKAiPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHSSknAVENhfdtsyelealleqrvkrqllaevqAICPPGVTIMNVR 105
                   555688888885543237********************************99533344467777777777777777777776666667799998888 PP

                   TSS.-SHHHHHHHHHHHH.SSSCEEEEETT-TT CS
  NTP_transf_3  67 dpg.kgplaslaaalraaadadavlvlacDmPl 98 
                   +++  g ++s+++a   + ++ +++v++ D++l
    CTQ29000.1 106 QAQpLGLGHSILCARPVV-GDNPFVVVLPDIIL 137
                   88659**********999.77777777778765 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.3e-05      0.06      16      60 ..      28      69 ..      23     115 .. 0.69
   2 ?   -1.9   0.0      0.59   2.6e+03      96     122 ..     179     205 ..     166     221 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
                  GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES-HHHHHHHHHTT CS
  CTP_transf_3 16 KnlldlggkpliayvleaalkskafekvivaTDseeiknvakefg 60
                  K +l++ +kp+i+y++++++ ++  +++++ T   + kn++++++
    CTQ29000.1 28 KEMLPIVDKPMIQYIVDEIVAAGI-KEIVLVTH--SSKNAVENHF 69
                  99*******************888.55555553..3445555555 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.59
                   E-TT-TT--HHHHHHHHHHHHHSTTSS CS
  CTP_transf_3  96 lqGdnPllqeevikkaietlkenqedy 122
                   +q  +P++ e  +++++e +++ +e++
    CTQ29000.1 179 IQTKEPMVAEGQVARIVEFIEKPDEPQ 205
                   677899999999999999999887764 PP

>> EFP_N  Elongation factor P (EF-P) KOW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.7   0.00012      0.55      27      53 ..     268     294 ..     266     295 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00012
                 EETTS--EEEEEEEETTTS-EEEEEEE CS
       EFP_N  27 kpGkGqafvrvklknlrtGakvektfk 53 
                 k G  qafv   ++nl+ G+k+ ++ k
  CTQ29000.1 268 KMGYMQAFVTYGMRNLKEGTKFRESIK 294
                 67888*****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2505.83
//
Query:       CTQ29001.1  [L=55]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       162  (0.00903564); expected 358.6 (0.02)
Passed bias filter:                      132  (0.00736237); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 492.73
//
Query:       CTQ29002.1  [L=542]
Description: fused putative membrane protein; putative membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-50  169.9  16.8    6.7e-50  169.3  16.8    1.3  1  TerC       Integral membrane protein TerC family
    3.6e-21   75.0   0.2    6.6e-20   70.9   0.0    2.4  2  CorC_HlyC  Transporter associated domain
    1.5e-14   54.1   0.2    1.2e-07   32.1   0.0    2.7  2  CBS        CBS domain


Domain annotation for each model (and alignments):
>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.3  16.8   1.1e-53   6.7e-50       1     180 [.      29     218 ..      29     219 .. 0.95

  Alignments for each domain:
  == domain 1  score: 169.3 bits;  conditional E-value: 1.1e-53
        TerC   1 ltlvlleivLsiDNlvviallvkklpeeqqkkalllGilgAlvlRillillavallel...........f...dlilligglfLlytavkellekrlen 85 
                 +tlv++e+vL+iDNlv+ia+l++klp++q+++a+++G+++A+v+R+ll++++++l++l           f   dli+l+gglfLl++a+ el e+    
  CTQ29002.1  29 VTLVVIELVLGIDNLVFIAILAEKLPPAQRDRARITGLMLAMVMRLLLLASISWLVTLtkplivfhdfsFsarDLIMLFGGLFLLFKATVELNERL--- 124
                 589************************************************************9999882556*******************9754... PP

        TerC  86 klvkeekkkkkktkstllavviqielaDlvfslDSvlaavaitsdlfivitavilsilvlrflakllakllerfptlkylalalllligvklvle 180
                    k+ ++  +++ ++++avv qi+++D +fslDSv++av++ ++l+++++av+++i ++ +++k+l+++++++pt+ +l+l++ll+ig++l++e
  CTQ29002.1 125 -EGKDSDNPTQRKGAKFWAVVAQIVVLDAIFSLDSVITAVGMVDHLAVMMAAVVIAISLMLMASKALTRFVNSHPTIVILCLSFLLMIGFSLIAE 218
                 .467788888889999****************************************************************************987 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.049   2.9e+02      32      55 ..     426     447 ..     410     457 .. 0.57
   2 !   70.9   0.0   1.1e-23   6.6e-20       3      78 ..     456     530 ..     454     532 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.049
                 -SBHHHHHHHHH-S---TT-EEEE CS
   CorC_HlyC  32 yeTlgGlllellgriPkegesvev 55 
                   Tl++ + +  g++P+e e  e+
  CTQ29002.1 426 IVTLSDVMETIAGNLPNEVE--EI 447
                 34555555555555555444..33 PP

  == domain 2  score: 70.9 bits;  conditional E-value: 1.1e-23
                 ECTTEEEEETT-BHHHHHHHHTSTTHH.CT-SBHHHHHHHHH-S---TT-EEEEEETTEEEEEEEEETTCEEEEEEE CS
   CorC_HlyC   3 ldegsylvdGslpldeleeelglelpe.edyeTlgGlllellgriPkegesvevdleglrftVlemdgrrIkkvrve 78 
                  ++gs++v+G +pl++l +++ l+l++  +y+T++Gll+e l+++P++ge++e+d  g+++  l++d +r++kv++ 
  CTQ29002.1 456 HQDGSWTVNGHMPLEDLVQYVPLPLDDkREYHTVAGLLMEYLQHVPQVGETIEID--GYTLRTLQVDSHRVQKVQIV 530
                 579************************77*********************77888..*****************996 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.2   2.2e-07    0.0013       1      53 [.     317     373 ..     317     376 .. 0.84
   2 !   32.1   0.0   1.9e-11   1.2e-07       7      56 ..     388     437 ..     382     438 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.2e-07
                 HHHHSBS..SCEEEETTSBHHHHHHHHHHHT.SSEEEEE....ETTTBEEEEEEHHHHHH CS
         CBS   1 Vgdimtr..dvvtvppdttleealelmrekg.vsrlPVV....dedgklvGivtlrDllr 53 
                 V++imt+  d+  ++ +++ ee+  l  ek+ ++rl VV    d+++ l+G+v+  Dll+
  CTQ29002.1 317 VSSIMTSrhDIERINLSAPEEEIRSLV-EKNqHTRL-VVtggkDNED-LLGVVHVIDLLQ 373
                 778988888999***************.777688**.7669855444.**********97 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 1.9e-11
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllrall 56 
                 r+++++p+  +l  ale++r+++ +  +VVde g + Givtl+D+++ ++
  CTQ29002.1 388 RQPLVFPEGLPLLSALEQFRQARTHFAFVVDEFGSVEGIVTLSDVMETIA 437
                 67889**************988886558*****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       940  (0.052429); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.36
# Mc/sec: 4465.83
//
Query:       CTQ29003.1  [L=615]
Description: putative inner membrane protein involved in outer membrane protein assembly [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-35  123.5   7.8    1.2e-19   70.6   6.0    2.1  2  AsmA         AsmA family
    4.3e-25   88.6  17.8    2.2e-20   73.2   7.3    3.9  4  AsmA_2       AsmA-like C-terminal region
     0.0066   16.1   1.6       0.58    9.7   0.0    2.7  3  DUF3971      Protein of unknown function
  ------ inclusion threshold ------
        0.1   11.1   0.0       0.16   10.4   0.0    1.2  1  Gyro_capsid  Gyrovirus capsid protein (VP1)
       0.17   11.3   0.0        1.8    8.0   0.0    2.2  2  AsmA_1       AsmA-like C-terminal region


Domain annotation for each model (and alignments):
>> AsmA  AsmA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   1.4e-18   4.9e-15       5     229 ..       2     212 ..       1     218 [. 0.89
   2 !   70.6   6.0   3.3e-23   1.2e-19     277     607 ..     193     509 ..     183     510 .. 0.89

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.4e-18
        AsmA   5 lkilllilivLlLLlvlliaiialfdpnnykptlqqkvkeatnrplaiegdigrsllPwptlsLsdiklaspegakkpelvsveqveisLsplpLlrkq 103
                 ++il+ ++i+L ++++ l ++++l++pn+++  ++  v+e ++ +l+++g + +   P + +     +l+    a++p ++  +++ +++++lpLl+ q
  CTQ29003.1   2 RRILTTLMILLAVIVAGLTSLVLLVNPNDFRAYMVHEVAERSGYQLDLDGPLRWHVWPQLSILSGRMTLTARG-AEEP-VIRADNMRLDVALLPLLSHQ 98 
                 6788888888888888889****************************************99999999999877.8888.******************** PP

        AsmA 104 ieiasikldgpslslerlkdgkknwqeliqnnqnaasnantqqkqptqtraalsldigeikvsngkvtyddkasekilndidlelqvsalkgpslawrk 202
                 ++++++ l+g+ ++l+  ++ +    + + +++n+++           +   +s d ++++v+ + + ++ ++ e+++ + d+ lq+++       ++ 
  CTQ29003.1  99 LQVKQVMLKGAVIQLTPKTEAVRDSSAPVVPHDNTLPL--------APEDRGWSYDVRQLQVADSVLFFQHENGEQVT-VRDIRLQMEQDEN---HRAT 185
                 *************************************9........455679*********************99965.4455555555445...4689 PP

        AsmA 203 ikisGkleqdnqsfgslvnvkvnkgel 229
                 + +sG+ + d+   + + +++v+ g++
  CTQ29003.1 186 VDFSGRVNRDQRDLALNFSATVQGGDY 212
                 999999999999999999999988877 PP

  == domain 2  score: 70.6 bits;  conditional E-value: 3.3e-23
        AsmA 277 nlskedlrLkasglksilaa.lslkadeldslanqaeltgvnlprtpqaitlqelslsaktensqvsivLknltlnldklsvngkkiviksdinganql 374
                 n ++ dl+L++s   +  ++  slka   d  + ++ l g++lp +   +  ++l++s+++ + ++   + nl l  +  +v+g   v+ +d       
  CTQ29003.1 193 NRDQRDLALNFSATVQGGDYpHSLKA---DFTQLSWQLRGAELPPDGI-NGQGSLQASWQEDGKTLR--FDNLNLMANRSTVTGSGSVVLGDR------ 279
                 56778888888887666665356776...577899********96653.46789*********9999..99999999********99999999...... PP

        AsmA 375 pkaqarpklrgkLsspeLdldrlqpikaaiatkskaneqkasglsadkknkplkeerillgvwqeieadlsanidkvtyssllisdlkaklrlegGvlq 473
                       p ++++L+   Ldld l+   +  at+s a++q +s++         + er   + +++ ++  ++++d+++  +l  ++++ ++  ++G+l 
  CTQ29003.1 280 ------PDWSLDLHATTLDLDSLLAQRSP-ATDSSASQQGQSQTRPLRPVIADSDEREDYQSLRGFNGRMALSADQLQWRGLNFTQVQSEISNQQGLLT 371
                 ......******************99999.77777777777776655555555677777899999999******************************* PP

        AsmA 474 LsrlkaglygGeleakgqldlskksatvrlklnaknlplkrLladlskikkldGlldididltgsGnsvatlinnLnGqlklnlnnGalsGlnlnqilv 572
                  s+++++l gG+l   g ld++++    + +  ++n+ ++ L +++     l G l+++ + +g   +   + ++ +Gq++l+++++ + Gln +q+++
  CTQ29003.1 372 VSKMQGNLDGGQLSLPGTLDARGDTPLATFQPALQNVEIGSLIKAFNYSLNLTGKLSLSGEFSGTRIDADDFRRHWQGQAQLQMADTRTEGLNFQQLVQ 470
                 *************************************************************************************************** PP

        AsmA 573 agiaa....ltssfgtkstpfknlavslnlkkGvltlnd 607
                 +         ++ + ++ t++     +l l++G +tln 
  CTQ29003.1 471 QAVERstnvRAQENYDNATRLDSVSSRLTLDNGLVTLNR 509
                 98887889667778999*******************996 PP

>> AsmA_2  AsmA-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.09   3.2e+02      72     103 ..      47      75 ..      36     112 .. 0.66
   2 ?    3.1   0.1     0.016        58      25      81 ..     182     248 ..     160     250 .. 0.62
   3 !   17.8   0.6   5.3e-07    0.0019       3      61 ..     242     299 ..     239     318 .. 0.86
   4 !   73.2   7.3     6e-24   2.2e-20       1     182 [.     356     540 ..     356     543 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.09
      AsmA_2  72 gslelnlswqgaplspdlssLsGdlsleledg 103
                 ++l++ l+w  +   p+ls LsG+++l+ +  
  CTQ29003.1  47 LDLDGPLRWHVW---PQLSILSGRMTLTARGA 75 
                 455555555555...56666999999998876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.016
      AsmA_2  25 pggklsgsgswstkggaartnldlkldgvdlgall........krlglaevl.gG.kgslelnlswq 81 
                   +++++sg ++ +++   +n+++ ++g d   +l        ++l  ae   +G +g+ +l+ swq
  CTQ29003.1 182 HRATVDFSGRVNRDQRDLALNFSATVQGGDYPHSLkadftqlsWQLRGAELPpDGiNGQGSLQASWQ 248
                 3456677777777777678999999999999999977777766666655543344444444444476 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 5.3e-07
      AsmA_2   3 nvsgklrlkdeglrldnlrlrspggklsgsgswstkggaartnldlkldgvdlgallkr 61 
                  ++++++ ++++lr+dnl+l +   +++gsgs+  +++ ++++ldl  +  dl+ ll++
  CTQ29003.1 242 SLQASWQEDGKTLRFDNLNLMANRSTVTGSGSVVLGDR-PDWSLDLHATTLDLDSLLAQ 299
                 45667777888************************877.****************9975 PP

  == domain 4  score: 73.2 bits;  conditional E-value: 6e-24
      AsmA_2   1 lgnvsgklrlkdeglrldnlrlrspggklsgsgswstkggaartnldlkldgvdlgallkrlglaevlgGkgslelnlswqgaplspdlssLsGdlsle 99 
                 +++v+++++++++ l++ +++++++gg+ls+ g+++++g+ +  +++ +l++v +g l k++++  +l+Gk+sl++++s++  ++    +  +G+++l+
  CTQ29003.1 356 FTQVQSEISNQQGLLTVSKMQGNLDGGQLSLPGTLDARGDTPLATFQPALQNVEIGSLIKAFNYSLNLTGKLSLSGEFSGTRIDADDFRRHWQGQAQLQ 454
                 5799****************************************************************************998888888********** PP

      AsmA_2 100 ledgqilgvs......ll..rdlgllkltldfrdlfgeglafddikgtftienGvvttkdfklkgpaaavtvsGtvdldtetldlnvvvvp 182
                 ++d++ +g++      ++  r+ ++       +   ++ + +d+++  +t++nG+vt++ ++ +++ +a+t +G++dl +e+ d++ +v++
  CTQ29003.1 455 MADTRTEGLNfqqlvqQAveRSTNV-----RAQENYDNATRLDSVSSRLTLDNGLVTLNRLQGQSDVMAMTGEGQLDLQKENCDMRFNVRV 540
                 ********99975553224444444.....4578888899**********************************************99975 PP

>> DUF3971  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.6   5.6e+03     224     259 ..     182     217 ..     176     227 .. 0.70
   2 !    4.8   0.1    0.0049        18     179     277 ..     339     434 ..     330     445 .. 0.74
   3 !    9.7   0.0   0.00016      0.58     194     250 ..     487     545 ..     470     584 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.6
     DUF3971 224 qplnltiktkekkkdgdvsiklkgkwaaasllkklp 259
                 + ++++++++ ++++ d+ ++++++++    + +l+
  CTQ29003.1 182 HRATVDFSGRVNRDQRDLALNFSATVQGGDYPHSLK 217
                 567788888888888888888877776665555544 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0049
     DUF3971 179 sGevtlknnnlslknpdleltnvsGeleFdnegltaknlsanllgqplnltiktkekkkdgdvsiklkgkw.aaasllkklpaplddrlsGeadwqlkl 276
                 +G + l+  +l     +l +t+v++e++ + + lt +++++nl g++l+l  +     +   ++++ + ++ ++ sl k ++ +l+    G++++++++
  CTQ29003.1 339 NGRMALSADQLQWR--GLNFTQVQSEISNQQGLLTVSKMQGNLDGGQLSLPGTLDARGDTPLATFQPALQNvEIGSLIKAFNYSLNL--TGKLSLSGEF 433
                 56666666666666..99*******************************99998555555555777666655677777766666544..6666666666 PP

     DUF3971 277 s 277
                 s
  CTQ29003.1 434 S 434
                 5 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00016
     DUF3971 194 pdleltnvsGeleFdnegltaknlsanllgqplnltiktkekkkdgdv..siklkgkwa 250
                   + l++vs++l++dn+ +t + l+++     ++++ +   +k++ d+  ++ + g w+
  CTQ29003.1 487 NATRLDSVSSRLTLDNGLVTLNRLQGQSDVMAMTGEGQLDLQKENCDMrfNVRVLGGWK 545
                 5689*******************************************966666666664 PP

>> Gyro_capsid  Gyrovirus capsid protein (VP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   4.4e-05      0.16     130     193 ..     107     172 ..      82     182 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.4e-05
  Gyro_capsid 130 ageliadgsksqaadnwpncwlpldnnvpsatpsawwrwalmmmqptdscrffnhp..kqmtlqdm 193
                   g +i    k++a  +     +p dn +p a     w + +  +q +ds+ ff+h   +q+t++d+
   CTQ29003.1 107 KGAVIQLTPKTEAVRDSSAPVVPHDNTLPLAPEDRGWSYDVRQLQVADSVLFFQHEngEQVTVRDI 172
                  567777788999999999999*********************************973369999987 PP

>> AsmA_1  AsmA-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.11   3.9e+02     115     143 ..     250     278 ..     239     298 .. 0.75
   2 ?    8.0   0.0    0.0005       1.8     113     155 ..     499     541 ..     487     553 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.11
      AsmA_1 115 kkdllviekiklkgdsidiegkGiielkk 143
                 + + l +++++l ++  +++g+G++ l  
  CTQ29003.1 250 DGKTLRFDNLNLMANRSTVTGSGSVVLGD 278
                 4578999*****************98854 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0005
      AsmA_1 113 kikkdllviekiklkgdsidiegkGiielkkkkldlklqlktl 155
                 ++++ l+++++++ ++d + ++g+G ++l+k++ d+++++++l
  CTQ29003.1 499 TLDNGLVTLNRLQGQSDVMAMTGEGQLDLQKENCDMRFNVRVL 541
                 56777899999999************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.36
# Mc/sec: 5135.26
//
Query:       CTQ29004.1  [L=193]
Description: 2'-deoxycytidine 5'-triphosphate deaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-10   40.5   0.0    1.1e-07   31.0   0.0    2.0  2  DCD       2'-deoxycytidine 5'-triphosphate deaminase (DCD)
    4.9e-08   32.7   0.0      6e-08   32.4   0.0    1.2  1  dUTPase   dUTPase


Domain annotation for each model (and alignments):
>> DCD  2'-deoxycytidine 5'-triphosphate deaminase (DCD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.2e-11   1.1e-07       5     121 ..       3     126 ..       2     141 .. 0.86
   2 !    8.0   0.0   0.00012       1.1     307     353 ..     136     183 ..     130     189 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.2e-11
         DCD   5 lpdqeiealieegaikaeepleeeqiqPaslDLrLgkk..ayrvr.asF..lpgkgekvaekleelklheldLtega..vlekgcvYivplleslaLpa 96 
                 l d++iea ++eg ++ + +   e+i  a +D+rLg+k  ++r + a F  l+g++++v+  l+++  +e+ L eg    l  g + ++   es++Lpa
  CTQ29004.1   3 LCDRDIEAWLDEGRLAINPRPPVERINGATVDVRLGNKfrTFRGHtAPFidLSGPKAEVSAALDRVMSEEIVLPEGEafFLHPGELALAVTYESVTLPA 101
                 568899***********99999**************97336775426685568********************98752369****************** PP

         DCD  97 dlsaaanpksstGRlDvftRvitdk 121
                 dl +  + +ss  Rl +++ v + +
  CTQ29004.1 102 DLVGWLDGRSSLARLGLMVHVTAHR 126
                 ******************9997754 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00012
         DCD 307 vLev.RsrevPFiledgqivgrlvyermaekpealYGeelgsnYqgqg 353
                 vLe   s + P  l+ g  +g l +e ++  +++ Y ++  ++Y+ q+
  CTQ29004.1 136 VLEFyNSGKLPLALRPGMPIGALSFEPLSGPAARPYNRREDAKYRDQQ 183
                 7775257799**********************************9986 PP

>> dUTPase  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   6.7e-12     6e-08      22     125 ..      79     185 ..      59     189 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 6.7e-12
                 SSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEE..EEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEEEEEEBECGEEEEESST.TT CS
     dUTPase  22 kdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvp..gvidsdyrGevkvvlfnltkkdvkikkgdRiAqLifariltaeleevetl.ka 117
                 + + + pge  l +t  s++lp++l + + +RS+la++gl+v++    id  + G + + ++n++k +  +  g  i  L f+++  +   ++++  +a
  CTQ29004.1  79 EAFFLHPGELALAVTYESVTLPADLVGWLDGRSSLARLGLMVHVtaHRIDPGWSGCIVLEFYNSGKLPLALRPGMPIGALSFEPLSGPAARPYNRReDA 177
                 5677889999*********************************97788***************************************999999999999 PP

                 ESSBTTXT CS
     dUTPase 118 tergeggf 125
                 ++r ++g 
  CTQ29004.1 178 KYRDQQGA 185
                 99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1436.38
//
Query:       CTQ29005.1  [L=213]
Description: uridine/cytidine kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-44  152.4   0.0    1.4e-44  152.2   0.0    1.0  1  PRK           Phosphoribulokinase / Uridine kinase family
    5.6e-05   23.7   0.0     0.0001   22.8   0.0    1.4  1  AAA_18        AAA domain
    0.00015   21.5   0.4        0.4   10.3   0.0    2.1  2  CoaE          Dephospho-CoA kinase
    0.00098   19.0   0.0       0.16   11.9   0.0    2.3  2  APS_kinase    Adenylylsulphate kinase
     0.0079   16.7   0.0     0.0098   16.4   0.0    1.4  1  ABC_tran      ABC transporter
  ------ inclusion threshold ------
      0.018   14.9   0.0       0.84    9.4   0.0    2.1  1  dNK           Deoxynucleoside kinase
      0.062   13.7   0.0      0.093   13.1   0.0    1.3  1  AAA_16        AAA ATPase domain
      0.096   12.1   0.1       0.54    9.7   0.0    1.9  2  KTI12         Chromatin associated protein KTI12
       0.14   12.5   0.0       0.29   11.5   0.0    1.6  1  RNA_helicase  RNA helicase
       0.15   12.4   0.1        1.5    9.3   0.0    2.1  2  AAA_17        AAA domain


Domain annotation for each model (and alignments):
>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   0.0   7.9e-48   1.4e-44       1     196 [.      10     199 ..      10     200 .. 0.94

  Alignments for each domain:
  == domain 1  score: 152.2 bits;  conditional E-value: 7.9e-48
         PRK   1 vIgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleerkrakekevsflspeandfdllyevlkelkegkkvdkpiYsheteea 99 
                 ++g+ag+S++Gk+ +a +l   ++ e+   ++ e++ ++  d+ +kd +    +++ +   +++ p  +d  ll++ l+ lk+g+ ++ p+Ys++++ +
  CTQ29005.1  10 IVGIAGASASGKSLIASTLYRELR-EQ---VGDEHIGVIPEDSYYKDQSHLSMEERVKT--NYDHPSSMDHSLLFQHLQMLKSGQPIELPVYSYVEHTR 102
                 79*********************9.44...44699999999999999998888888855..566799******************************** PP

         PRK 100 apdkeeliegadvlviEGlhalydervaelldlkiyvdisidlelarklqRDiaeRGrsleavldsil.rrkpdyvnyikpqfseadliiqrvptvdv 196
                  p ++  +e+++v+++EG++ l d r+++ l+++i+vd+  d++l+r+++RD++eRGrs+++v+++++  ++p + ++i+p +++ad+i++r+ ++ +
  CTQ29005.1 103 MP-NTIHVEPKKVIILEGILLLTDARLRNELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQkTVRPMFLQFIEPSKQYADIIVPRGGKNRI 199
                 **.*****************************************************************9************************99987 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   5.8e-08    0.0001       1     119 [.      11     158 ..      11     169 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.8e-08
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.gvnlrdvakenglllevdpe........aldeskrldedkldklldaleenss.................... 69 
                 ++++G++++GK+ +a  L ++l +  g++++ v++e+ ++ ++ +          +d    +d   l ++l       +                    
  CTQ29005.1  11 VGIAGASASGKSLIASTLYRELrEQvGDEHIGVIPEDSYYKDQSHLsmeervktNYDHPSSMDHSLLFQHL-------Qmlksgqpielpvysyvehtr 102
                 78**********99999988874446777777777777777777775555443333333333333333333.......13444667************* PP

      AAA_18  70 .....aleegknlvidghlaeleseaakdikk.vvLtaspeelleRlekRgyeeak 119
                      + e  k+++++g+l       + ++++ ++++++ +++l R  kR+ +e+ 
  CTQ29005.1 103 mpntiHVEPKKVIILEGILLLTDARLRNELNFsIFVDTPLDICLMRRIKRDVNERG 158
                 ****999***********998888888888889*******9998888888877654 PP

>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00022       0.4       2      21 ..      10      29 ..       9      41 .. 0.84
   2 !    9.6   0.1   0.00038      0.68      94     161 ..     103     171 ..      77     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00022
                EEEEEESTTSSHHHHHHHHH CS
        CoaE  2 ivgltGgiasGKstvanlfa 21
                ivg++G  asGKs++a+++ 
  CTQ29005.1 10 IVGIAGASASGKSLIASTLY 29
                9**************99875 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00038
                 HHHHHHH--S.SEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHCCTSTHHHHHHHHHHS--HH CS
        CoaE  94 ikkelakles.kyvlldvPLLvEkqlekliervlvvdvelelqveRlvardgvseeevkaiiaaQlsee 161
                 + ++++   +  ++l  + LL++++l++ ++  + vd +l+  + R ++rd  ++    + + aQ ++ 
  CTQ29005.1 103 MPNTIHVEPKkVIILEGILLLTDARLRNELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKT 171
                 44555555552455666899999****************************999999999999998776 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   8.7e-05      0.16       3      29 ..       9      35 ..       7      47 .. 0.87
   2 ?    4.9   0.0     0.012        22     103     120 ..     134     151 ..     124     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.7e-05
                EEEEEESSTTSSHHHHHHHHHHHHHHT CS
  APS_kinase  3 vvvwltGlsgsGKstianalekkLvek 29
                v+v ++G s+sGKs ia +l ++L+e+
  CTQ29005.1  9 VIVGIAGASASGKSLIASTLYRELREQ 35
                67889*******************987 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.012
                 EEEEEE--HHHHHHHTTT CS
  APS_kinase 103 ievfvdtplevceerDpk 120
                 + +fvdtpl++c  r  k
  CTQ29005.1 134 FSIFVDTPLDICLMRRIK 151
                 68**********876544 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.5e-06    0.0098      13      64 ..      10      65 ..       5     173 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.5e-06
                EEEEEESTTSSHHHHHHHHTTSS--SEEEEEET..TCEGGG..B-HHHCCHCEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx..xxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkpteGeilld..gkdlke..qeleslrkeigvl 64
                +v+i G + +GKS ++++l+++l+ + G+ ++    +d+ +  q++ s+++++++ 
  CTQ29005.1 10 IVGIAGASASGKSLIASTLYRELREQVGDEHIGviPEDSYYkdQSHLSMEERVKTN 65
                799**********************9998655432444443334444444444444 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00047      0.84       3     139 ..      13     148 ..      11     202 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00047
                 EEESTTSSHHHHHHHHHCCSTCEEEE-.....HHHHCCSSSS.....HHHHHHHHSHHH..HHHHHHHHHHHHHHHHHHCHHSSS-EEEEES-HHHHHH CS
         dNK   3 veGnIgaGKstlvklLskklgvkvfeE.....pvdkwtnvqk.....nlLekfYkdpsr..wsfalqtyvllsrlkqqlealatkqvvvleRsiysdry 89 
                 + G  ++GKs ++++L ++l  +v  E     p d + ++q+     + ++  Y+ ps    s+ +q   +l            k+++ +e  +ys + 
  CTQ29005.1  13 IAGASASGKSLIASTLYRELREQVGDEhigviPEDSYYKDQShlsmeERVKTNYDHPSSmdHSLLFQHLQML------------KSGQPIELPVYSYV- 98 
                 678888888888888888888888888666666666655555555555555555555543334444433222............22222333333322. PP

                 THHHHHHHTTSS-HHHHHHHHHHHHHHHHHCCH.-SEEEEEE--HHHHHHH CS
         dNK  90 iFakalaekgtlseeelkiykelldnlleelak.pdlliYLkasletcler 139
                      + +  +++++++ i++ +l      l + +++ i+++++l+ cl r
  CTQ29005.1  99 -EHTRMPNTIHVEPKKVIILEGILLLTDARLRNeLNFSIFVDTPLDICLMR 148
                 .11222222223333333333333332223332356667777777777644 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.2e-05     0.093      21      54 ..       5      42 ..       2      84 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.2e-05
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekd....ggi 54
                s+++ +v + G+s++GKs ++ +l+r+l+++    ++ 
  CTQ29005.1  5 SHQCVIVGIAGASASGKSLIASTLYRELREQvgdeHIG 42
                567788999***************99999986555444 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0003      0.54       5      46 ..      12      55 ..       9      80 .. 0.76
   2 ?    0.0   0.1      0.26   4.7e+02     234     271 ..     141     180 ..     122     181 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0003
                EEE--TTSSHHHHHHHHHHHHHH..TT--EEEE-THHHH.TTSS CS
       KTI12  5 vltGlPssGKstrakeLakalee..ekrsvvviddeslgiekds 46
                 + G  +sGKs +a++L ++l+e   + ++ vi ++s+  ++++
  CTQ29005.1 12 GIAGASASGKSLIASTLYRELREqvGDEHIGVIPEDSYYKDQSH 55
                588999*****************776777888888888744433 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.26
                 ...HHHHHHHHHHHHHHHT...TSSS--HHHHHHHHHHHH CS
       KTI12 234 kltlaeLsrlrrqFvklnk..aklenvdeekiaklFvdyL 271
                  l +  ++r++r   +  +  ++     ++ + ++F++++
  CTQ29005.1 141 PLDICLMRRIKRDVNERGRsmDSVMAQYQKTVRPMFLQFI 180
                 3667777888887655555422333445678999999998 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00016      0.29       3      93 ..      13     101 ..      11     110 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl.....klkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdeenps.dlaelirlvsstpyplnmasleekg 93 
                   + G+s  GKS++a +L ++l +++     + + +ds+y    +++++++  ++ v    D +++ d    s  ++ l  l s +p++l++ s  e+ 
    CTQ29005.1  13 IAGASASGKSLIASTLYRELREQVgdehiGVIPEDSYYK---DQSHLSM--EERVKTNYDHPSSMDH---SlLFQHLQMLKSGQPIELPVYSYVEHT 101
                   6899*****************888222223333333332...2222222..4555555566666665...645555555566677777777666665 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.35   6.3e+02       2      19 ..      15      32 ..      14      43 .. 0.78
   2 ?    9.3   0.0   0.00083       1.5     103     132 ..     133     164 ..     107     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.35
                E-TTSSHHHHHHHHHHHH CS
      AAA_17  2 GgPGsGKgtqceklveky 19
                G   sGK+ ++++l +++
  CTQ29005.1 15 GASASGKSLIASTLYREL 32
                8899****9999998776 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00083
                 SEEEEEE--HHHHHHHHHHH..TTST-TS-SH CS
      AAA_17 103 daiilleadpeeilerrlkd..rtrgrdddne 132
                 ++ i+++++ + +l rr+k+   +rgr+ d+ 
  CTQ29005.1 133 NFSIFVDTPLDICLMRRIKRdvNERGRSMDSV 164
                 7889***************97668****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1642.99
//
Query:       CTQ29006.1  [L=282]
Description: 3-methyl-adenine DNA glycosylase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-30  103.8   0.0    1.3e-29  102.9   0.0    1.5  1  AlkA_N    AlkA N-terminal domain
    9.8e-10   38.9   0.0    1.7e-09   38.1   0.0    1.4  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei
  ------ inclusion threshold ------
       0.06   13.2   0.0       0.15   12.0   0.0    1.7  1  HHH       Helix-hairpin-helix motif
      0.098   13.3   0.0         22    5.8   0.0    2.6  2  HHH_5     Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> AlkA_N  AlkA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   2.8e-33   1.3e-29       3     116 .]       3     112 ..       1     112 [. 0.98

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 2.8e-33
      AlkA_N   3 rLayrpPydwaallaFlaaraiegvEavdedsygRtlrldgakGvvevrhepeksalkvrlslsdlraleaviarvrrllDLdadpeaieaaLdpllap 101
                  L++ pPydwa++++Fl+ara++gvE+++++ y+R++ ++g++G++++++++e++ l+v+ls  + ++ e + ar+ +l+DL +dp+++++aL    + 
  CTQ29006.1   3 LLPWTPPYDWAWMVGFLQARAVAGVERFHDGGYSRSFGVEGHRGLIHLAPDEEAQGLRVSLSPGLQPVAEICYARIGQLFDLACDPRQVARAL----GD 97 
                 699******************************************************************************************....9* PP

      AlkA_N 102 evaarpGlRvPgavd 116
                 +++arpGlR+Pga+d
  CTQ29006.1  98 LAQARPGLRLPGALD 112
                 *************87 PP

>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   3.9e-13   1.7e-09       1      77 [.     118     239 ..     118     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 3.9e-13
                 HHHHHHTTS-HHHHHHHHHHHHHHHS...........HCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH...................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................... RF
     HhH-GPD   1 vsailsqqtsderanriierlferfg...........fptpedladadeekLrelirelGfyrrKakyikelArilv...................... 66 
                 v+a+l q +s++ a+r+++++++ +g           fptpe+l +ad++ L++l    G++ r+a+ +++lAr+ +                      
  CTQ29006.1 118 VRAVLGQLVSVAMAARLTAKVAAGWGeplaeapgyvlFPTPEALSRADPQALKAL----GMPLRRAEALIHLARAALsgelpltapadidaglrqlqtl 212
                 789****************************************************....****************999999988888888888888888 PP

                 ..................S-SSS--TTSH CS
                 ..................xxxxxxxxxxx RF
     HhH-GPD  67 ..................gkpdvlivvDv 77 
                                   +  d++ ++D 
  CTQ29006.1 213 pgigrwtanyfalrgwqaK--DIFLPDDY 239
                 8888888888888887540..34444443 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.4e-05      0.15       5      25 ..     201     221 ..     197     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.4e-05
                 HHTSSHHHHHTSTT-SHHHHH CS
         HHH   5 lipasreeLlalPGVGpktAe 25 
                 +i+a + +L++lPG+G+ tA+
  CTQ29006.1 201 DIDAGLRQLQTLPGIGRWTAN 221
                 67788889*********9997 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0048        22      23      52 ..     155     183 ..     146     187 .. 0.88
   2 ?    5.2   0.0    0.0072        32      14      48 ..     185     220 ..     183     221 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0048
                 --SHHHHHHS-HHHHHTSTTS-HHHHHHHH CS
       HHH_5  23 iesvedlaaadveeLakipGiGkktAerii 52 
                 + ++e+l +ad+++L ++ G+  ++Ae +i
  CTQ29006.1 155 FPTPEALSRADPQALKAL-GMPLRRAEALI 183
                 679**************9.99999999887 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0072
                 HHHHHHTT.T--S.HHHHHHS-HHHHHTSTTS-HHHH CS
       HHH_5  14 tAlallsa.Gies.vedlaaadveeLakipGiGkktA 48 
                 +A+a ls+    + ++d ++a   +L+++pGiG  tA
  CTQ29006.1 185 LARAALSGeLPLTaPAD-IDAGLRQLQTLPGIGRWTA 220
                 67777777555552455.7777888999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2231.06
//
Query:       CTQ29007.1  [L=483]
Description: putative chaperone [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-20   70.6   0.0    1.2e-12   46.8   0.0    2.9  2  HSP70     Hsp70 protein
    4.5e-08   32.3   0.1    1.6e-05   23.9   0.0    2.6  3  MreB_Mbl  MreB/Mbl protein
     0.0073   15.6   0.0      0.037   13.3   0.0    2.1  2  StbA      StbA protein
  ------ inclusion threshold ------
      0.014   15.1   0.1       0.14   11.8   0.1    2.2  2  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
      0.028   13.9   0.1      0.051   13.0   0.1    1.3  1  Ppx-GppA  Ppx/GppA phosphatase family
       0.11   11.1   0.0       0.28    9.7   0.0    1.6  2  MutL      MutL protein
       0.16   10.9   0.0       0.28   10.1   0.0    1.3  1  DDR       Diol dehydratase reactivase ATPase-like domain


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   4.8e-16   1.2e-12       2     205 ..      36     261 ..      35     292 .. 0.77
   2 !   19.6   0.0   8.4e-08   0.00021     251     347 ..     365     453 ..     346     480 .. 0.88

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 4.8e-16
                 EEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHH.HCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSS......EEEEET CS
       HSP70   2 iGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAk.rqavtnpkntvfsvKrliGrkfsdpevqkeikelpy......kvvkke 93 
                 iG+D Gt n+ vavm++++++ ++ e+g+   Ps++     e +     + + + t +++  + ++r i  + ++ +++   +++ +      + v+++
  CTQ29007.1  36 IGFDYGTANCSVAVMRENTPQLLTLENGSALLPSMLCAPTREAVSEWLYRhHDVPTHSDENQALLRRAIAANRDE-DIEVLRNSVQFglaslqQYVEDP 133
                 9**********************************9876666555544440556678888888899999876544.55544444444112111334555 PP

                 TSBEEEEE..EETTE.EEEHHHHH......HHHHHHHHHHHHHHHTSBEEEEEEEEXTTXX.......HHHHHHHHH.HHHHTTXEEEEEEEHHHHHHH CS
       HSP70  94 ngkavvev..eaage.kftpeqis......amvLkklketaeaylgkkvtdavitvPaYfn.......daqRqatkd.AgkiAGLnvlRivNepTAaal 175
                 ++   v+   ++ g   ++p+q++       +++ ++k +ae++l + +++avi  P  f+       +aq q + + A++ AG+  +    ep Aa+l
  CTQ29007.1 134 EEVYFVKSpkSFLGAsGLKPQQVAlfedlvCAMMLHIKLQAESQLPELIDQAVIGRPINFQglggdeaNAQAQGILErAAHRAGFRDVVFQFEPVAAGL 232
                 5666666522455668899999864444444456689***********************65555433578888765499******************* PP

                 HHHTCCSSSCEEEEEEEEXSSXEEEEEEEE CS
       HSP70 176 aYGldkkdkernvlvyDlGggtfdvSilel 205
                  +    ++ e+ vlv+D+Gggt+d+S+l +
  CTQ29007.1 233 DFEATLSE-EKRVLVVDIGGGTTDCSLLLM 261
                 **999998.******************965 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 8.4e-08
                 HHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHH CS
       HSP70 251 kalqrlkeaaekaKkeLSsskqteinleietvdedgkdlseklsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvk 347
                 +   rl + ae+ K++LSs+++ e+ l+++   +   dl + +  + +e   ++ l r++e v+ al  ++      d + l GGs+R P +++++ 
  CTQ29007.1 365 RLSYRLVRSAEESKIALSSAASVETALPFI---Q--DDLATAIAQQGLEAALDQPLTRIMEQVQLALDSSQTPP---DVIYLTGGSARSPLIKKALA 453
                 56679**************99999999987...3..3799***************************8777665...4578************9876 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.66   1.7e+03       3      17 ..      35      49 ..      33      53 .. 0.82
   2 !   23.9   0.0   6.4e-09   1.6e-05     112     165 ..     209     262 ..     159     290 .. 0.85
   3 !    5.7   0.0    0.0021       5.5     236     297 ..     401     456 ..     373     480 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.66
                EEEEEE-SSEEEEEE CS
    MreB_Mbl  3 dlgiDLGtantlvyv 17
                ++g D Gtan  v v
  CTQ29007.1 35 FIGFDYGTANCSVAV 49
                799*******98866 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 6.4e-09
                 HHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETT CS
    MreB_Mbl 112 vkeaakkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevavislg 165
                 ++ aa++aG r+v+   ep+aA +  +  ++e +  +vvdiGggtt+++++ +g
  CTQ29007.1 209 LERAAHRAGFRDVVFQFEPVAAGLDFEATLSEEKRVLVVDIGGGTTDCSLLLMG 262
                 5678999*****************************************998776 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0021
                 EEEHHHHHHHHHHHHHHHHHHHHHHHH..TS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH CS
    MreB_Mbl 236 evsseevrealkepvsaiveavkevLe..ktppeLaadivdrgivltGGgallkgldkllseet 297
                  + ++ ++ al +p+++i+e+v+ +L+  +tpp+         i ltGG+a    ++k l  ++
  CTQ29007.1 401 AIAQQGLEAALDQPLTRIMEQVQLALDssQTPPDV--------IYLTGGSARSPLIKKALAAQL 456
                 678889999*****************744688875........788888888887777776654 PP

>> StbA  StbA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.56   1.4e+03      85     101 ..     146     162 ..     143     184 .. 0.79
   2 !   13.3   0.0   1.5e-05     0.037     140     179 ..     219     258 ..     208     262 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.56
        StbA  85 LlksGlkpqdvdvvvtL 101
                 L +sGlkpq+v ++  L
  CTQ29007.1 146 LGASGLKPQQVALFEDL 162
                 678********887555 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.5e-05
        StbA 140 kkvkvlPeslPagfealkeldeleslLiiDlGGttLDvak 179
                 ++v    e + ag + +++l+e  ++L++D+GG t D++ 
  CTQ29007.1 219 RDVVFQFEPVAAGLDFEATLSEEKRVLVVDIGGGTTDCSL 258
                 56666679999***************************96 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.13   3.3e+02      38     100 ..      66     148 ..      39     167 .. 0.63
   2 ?   11.8   0.1   5.6e-05      0.14     139     177 ..     423     461 ..     384     480 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.13
      FGGY_C  38 yalegsiavagslva.wlldnlglreeirdagev.....................eeslaelaaaeavadaggvvfvpaf.sglra 100
                  +  +++a ++++v  wl + + + ++ ++++                       +    ++   + v+d+++v+fv    s l a
  CTQ29007.1  66 LLPSMLCAPTREAVSeWLYRHHDVPTHSDENQALlrraiaanrdedievlrnsvqF---GLASLQQYVEDPEEVYFVKSPkSFLGA 148
                 56677888888888889999997766666655556556666666666777664431...222233667777888887544355555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 5.6e-05
      FGGY_C 139 lealekdsgkpldrlavdGGgskndllmqllAdil.gvpV 177
                   al+ +s+ p+d ++++GG ++++l+ + lA  l g+p+
  CTQ29007.1 423 QLALD-SSQTPPDVIYLTGGSARSPLIKKALAAQLpGIPL 461
                 33443.36********************988754415665 PP

>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     2e-05     0.051     107     128 ..     237     258 ..     231     263 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2e-05
                 HT---SSEEEEEEETTEEEEEE CS
    Ppx-GppA 107 sllekgrglviDiGGGStElvl 128
                 +l+e+ r+lv+DiGGG t+++l
  CTQ29007.1 237 TLSEEKRVLVVDIGGGTTDCSL 258
                 6799***************997 PP

>> MutL  MutL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00011      0.28     238     264 ..     238     259 ..     224     274 .. 0.73
   2 ?   -3.3   0.0      0.98   2.5e+03     117     129 ..     429     441 ..     419     442 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00011
        MutL 238 laeeeekglgdllvvDvGGaTTdvhsv 264
                 l+e  ek    +lvvD+GG TTd    
  CTQ29007.1 238 LSE--EK---RVLVVDIGGGTTDCSLL 259
                 333..44...7************8766 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.98
        MutL 117 relrpdiiLLaGG 129
                  ++ pd+i L+GG
  CTQ29007.1 429 SQTPPDVIYLTGG 441
                 5789********9 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00011      0.28      96     150 ..     205     259 ..     199     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
         DDR  96 mqkiaeeleeelgvkvevggvEaemAilGalttPGtekplailDlGaGstDaali 150
                  q i e+ +++ g +  v   E+ +A l    t   ek + ++D+G+G+tD +l+
  CTQ29007.1 205 AQGILERAAHRAGFRDVVFQFEPVAAGLDFEATLSEEKRVLVVDIGGGTTDCSLL 259
                 556666667777777778888999999999999999***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3375.49
//
Query:       CTQ29008.1  [L=618]
Description: putative signal transduction histidine kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-21   75.1   0.0      1e-20   74.3   0.0    1.4  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    1.7e-17   63.7   0.2    3.7e-17   62.6   0.2    1.6  1  7TMR-DISMED2   7TMR-DISM extracellular 2
    1.6e-09   37.6   0.6    3.1e-09   36.7   0.6    1.5  1  HisKA          His Kinase A (phospho-acceptor) domain
    3.1e-06   27.2  29.2    1.1e-05   25.5  29.5    1.8  1  7TMR-DISM_7TM  7TM diverse intracellular signalling
  ------ inclusion threshold ------
      0.016   15.1   0.0       0.04   13.8   0.0    1.6  1  HATPase_c_5    GHKL domain
      0.055   13.4   0.0       0.13   12.3   0.0    1.5  1  HATPase_c_2    Histidine kinase-like ATPase domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   3.3e-24     1e-20       5     109 ..     512     615 ..     508     618 .] 0.92

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 3.3e-24
                 HHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEE CS
   HATPase_c   5 rLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGtt 103
                  L  +i nl+dNavk+ ++ gei + i+++ ++ +++++D G+G+p  + +++fe++ + ++t+   ggtGlGl++++++v+ ++G++w+ +    G+t
  CTQ29008.1 512 LLCIAIANLLDNAVKY-SPPGEIAIDIHSDAGQTELRIRDHGPGLPAGQAELIFERYRRGEHTSPVPGGTGLGLYVARQIVQAHDGKLWLAEHGPDGCT 609
                 567789**********.99*********7779***************************77777778***********************888899*** PP

                 EEEEEE CS
   HATPase_c 104 ftftlp 109
                 f++tlp
  CTQ29008.1 610 FILTLP 615
                 ****99 PP

>> 7TMR-DISMED2  7TMR-DISM extracellular 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.2   1.2e-20   3.7e-17       4     132 ..      21     154 ..      20     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 1.2e-20
                   EEEEEETTS---HHHHT-G..GG-EE-SSSEEEE-SECEEEEEEEEE-.--SS-EE..EEEE-TT-SEEEEEEEC...TCEEEEEEESTTS-..--S CS
  7TMR-DISMED2   4 leyleDptgsltiedvsaaaaarfepseaevlnfgytssayWlrftlenptdaprrwllelayplldevdlYvpd...ggslrearlGdlrp..eRp 95 
                   ++++ D++g++t++  +a +a++  ++++++++fgy+++++Wlr +l  +  a + ++l+l+++++d++++Y++    +g ++++  Gd+      +
    CTQ29008.1  21 VQWYADDSGQMTLDRFAALPADQL-ATTRQIPSFGYSRKTWWLRSELPGTWFAGEPRWLQLGPTFVDHLTIYYRPlgsDGPWTQRIFGDRDGarGSD 116
                   79**************77777788.99*********************9999999***********************99**********9943245 PP

                   S-TTEEEEEE--SSS-E..EEEEEEEESS-EEEE.... CS
  7TMR-DISMED2  96 vahrnfvfplplppget.vtvylrvksegslllplslw 132
                   +++r  v+ lp pp    +++++r++s+++l+l  sl 
    CTQ29008.1 117 LHYRERVLILPPPPTDAgYELVFRLQSTSTLILLASLS 154
                   776666665566554446*************9988875 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.6     1e-12   3.1e-09       2      64 ..     399     460 ..     398     463 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 1e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsri 64 
                 +++f+ +vaHE+rtPL++i++++e L+ + +++ ++++ +++i + a rl +l ++ L  +r+
  CTQ29008.1 399 QRQFMGMVAHEFRTPLAVIQAALENLRLS-AASTSQEARFDRIGRAATRLVQLTDNCLADARL 460
                 689***********************775.789**********************99887776 PP

>> 7TMR-DISM_7TM  7TM diverse intracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5  29.5   3.6e-09   1.1e-05       3     197 ..     168     363 ..     166     371 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 3.6e-09
  7TMR-DISM_7TM   3 llqglllGvllalalynlflffslrdksylyYalyllsfllyllslngllfqylwpnappalnnkllyltlllllilfll.Farsflelkk.kprl 96 
                    +++ +++G+ ++     l l ++lr + +   +l+ l + l+ + l+g+  +++   + +  ++ +++ +l+l++++++l    ++++lkk  prl
     CTQ29008.1 168 AFWSFYFGLAAVASGVALWLALALRRRLLWGICLFSLNYPLVAA-LHGFPEWFF--GHAALPFQDFMISSLSLFSYATALwLHSEIFDLKKnMPRL 260
                    789***************************************99.****99999..4555666666666666666788888********88666** PP

  7TMR-DISM_7TM  97 lklllllavllsllllllpllpyteslslaqllallvillllligikawrkgnkparyfliawl..llligvlidilsllgllpsnffteyllqig 190
                     +ll++ ++l ++l +++pl +y +++++  ++ +++  +ll+++ ++wrk+  +   +l+++l  ++++++++  ls+ g++p +   + l q++
     CTQ29008.1 261 HQLLIAAVILNLVLQVSIPLGFYGFAMQIEGVVFIIITPVLLFTSWWLWRKKAIDRTTLLLGLLppFYVAAAVLVQLSIHGIIPFHMAIYSLWQYA 356
                    ****************************************************************544667777777999******97777888888 PP

  7TMR-DISM_7TM 191 vllevll 197
                    ++++++ 
     CTQ29008.1 357 LIVHIIT 363
                    8888775 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.3e-05      0.04       6      89 ..     513     602 ..     509     612 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.3e-05
  HATPase_c_5   6 lcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg...........ekkklesskskkeehGiGlksireivkkykgnlsiea 89 
                  lc+ + nlLdNA+  +        +I + ++++ +++ ++i  +  g           + ++ e ++   +  G+Gl   r+iv+ ++g+l++  
   CTQ29008.1 513 LCIAIANLLDNAVKYSPPG-----EIAIDIHSDAGQTELRIRDHGPGlpagqaelifeRYRRGEHTSPVPGGTGLGLYVARQIVQAHDGKLWLAE 602
                  89**********9876654.....599999999999999*999988877777765553337777889999********************99765 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.2e-05      0.13      34     108 ..     515     590 ..     498     605 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.2e-05
  HATPase_c_2  34 laveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikgl 108
                  +a++ ++ Nav++  +    g++ + + sd+++ +++++D+Gpg ++ +++   e  +      +      G+Gl++ +++
   CTQ29008.1 515 IAIANLLDNAVKYSPP----GEIAIDIHSDAGQTELRIRDHGPGLPAGQAELIFER-YrrgehtSPVPGGTGLGLYVARQI 590
                  5555666666666665....999*********************666554433332.134553333344455666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4107.23
//
Query:       CTQ29009.1  [L=233]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.3e-19   67.8   0.0    1.3e-18   67.1   0.0    1.3  1  Response_reg  Response regulator receiver domain
    1.9e-11   43.9   0.1      4e-11   42.8   0.1    1.5  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
       0.12   12.5   0.0        0.3   11.2   0.0    1.6  1  DUF3653       Phage protein


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   2.2e-22   1.3e-18       2     111 ..       6     113 ..       5     114 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 2.2e-22
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEE CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddfl 98 
                    i++D+ ++++ l  +l  +g+ ev  ++++++++++l+++ vd++l+Di +pg dG+ +l+ ++e   +   ++++a+++++d+ +al++gad +l
    CTQ29009.1   6 AIIEDNADLLDELLAWLGYRGF-EVWGTRSAEAFWRQLHSHPVDIVLVDIGLPGEDGFSVLNYLHELG-HYGLVVVSARGQQQDKLQALSLGADAYL 100
                   69********************.*********************************************.999************************* PP

                   ESSG-HHHHHHHH CS
  Response_reg  99 sKpfdpeeLlkal 111
                    Kp++ ++L + l
    CTQ29009.1 101 IKPVNFAHLAETL 113
                   *******998875 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.1   6.8e-15     4e-11       3      60 ..     158     215 ..     156     228 .. 0.91

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 6.8e-15
                  EEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTT CS
  Trans_reg_C   3 eveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLedd 60 
                  ++elt++e++l elL++n+++v+s+ +L   +  +++++d + +dv +srLR k +++
   CTQ29009.1 158 TLELTQQEYRLVELLMRNRNEVCSKLDLHACLFSHESEPDLHRIDVVVSRLRHKARQQ 215
                  589***************************************************8885 PP

>> DUF3653  Phage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     5e-05       0.3      12      28 ..     144     160 ..     142     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5e-05
     DUF3653  12 WridedkLitPeGrrfs 28 
                 Wr++edkLi+P+ r+++
  CTQ29009.1 144 WRLQEDKLISPDARTLE 160
                 ***********998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1672.81
//
Query:       CTQ29010.1  [L=55]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 427.23
//
Query:       CTQ29011.1  [L=203]
Description: putative positive transcription regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-05   23.3   0.0    5.6e-05   22.6   0.0    1.4  1  GerE      Bacterial regulatory proteins, luxR family
  ------ inclusion threshold ------
      0.052   13.5   0.0        0.1   12.6   0.0    1.4  1  LRV_FeS   LRV protein FeS4 cluster


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   6.3e-09   5.6e-05       2      52 ..     141     191 ..     140     196 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 6.3e-09
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrve 52 
                 +Ls+ +  v + + eG+ + +IA+   +S++T  +hk  im+K  +++  e
  CTQ29011.1 141 VLSRSQTAVVHGILEGLDMSKIAALQRVSPRTAAYHKNKIMEKYSLNNNHE 191
                 799999*************************************88888765 PP

>> LRV_FeS  LRV protein FeS4 cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.1e-05       0.1       2      22 ..     125     145 ..     124     149 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
     LRV_FeS   2 ldWqGeevdCasCehrellae 22 
                  d  G+e++CasC+hr l+++
  CTQ29011.1 125 TDAAGRELSCASCPHRVLSRS 145
                 5668************88766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1446.52
//
Query:       CTQ29012.1  [L=424]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-97  325.7  45.6    4.5e-97  325.5  45.6    1.0  1  SDF       Sodium:dicarboxylate symporter family


Domain annotation for each model (and alignments):
>> SDF  Sodium:dicarboxylate symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.5  45.6  2.5e-101   4.5e-97       1     389 [.       7     403 ..       7     404 .. 0.94

  Alignments for each domain:
  == domain 1  score: 325.5 bits;  conditional E-value: 2.5e-101
         SDF   1 LllqiliglvlGlviGll.......elvkelaalisplgdlfinllkmlivPlvfasiisgiaslgdakklgklglktllyfllttliAaiiglilall 92 
                 L+l i++ +++G++ G++       ++v+++a +i +l dlf++l+km+i+Plvf+++++gi++lg+++ +g++g+k++++f++++++++++gl+++++
  CTQ29012.1   7 LTLFIVVFMLMGILSGAAihayatpTTVSAWADNITLLTDLFLRLIKMVIAPLVFSTLTVGIMRLGETATIGRVGGKAMVWFITSSVLSILVGLVIVTF 105
                 6778889999999999889999**999************************************************************************ PP

         SDF  93 lkpgselaleassakeae..kketdslldlilslipsnifealaegnvlavivfailfGialaalgekg.epllkffeslnevvmkvvkivmklaPigv 188
                  +pg++l+l+  +++ ++  + +  sl+ ++ + ip+ i ea+a++++l+++vf+++fGia a+lgek  +pl++ ++ ++ +++kv+  vm++aP+++
  CTQ29012.1 106 QHPGAGLNLAVPKEAVDTglAVSGMSLKGFLSHTIPTSITEAMANNEILQIVVFSMFFGIAGASLGEKFnAPLVAALNVVSHIMLKVTGYVMYVAPLAI 204
                 ****5554444333333301345668999**************************************9889**************************** PP

         SDF 189 faliaslvaskglgalsslakflltvylglaihllivlpllllvltkknplkflkkilpalltAfsTaSSaAtLPvtlecaeknlgvsesiasfvlPlG 287
                 fa+i s++as+glg+l+++a+f++ +yl++++   +++ + ++ + kk+++++l  + +++l+Af+T+SS+A+ P tle + k +g+s++i+sfvlP+G
  CTQ29012.1 205 FAAISSVIASQGLGILLNYASFIGGYYLAVLLTSAVLIAVGYM-VLKKEVFRLLNMLKDPVLVAFTTSSSEAAYPKTLERLVK-FGCSRNIVSFVLPIG 301
                 ********************************88888888877.5556***********************************.9************** PP

         SDF 288 atinmdGtalyeavaaifiaqlfgvelslgqllllvlvatlasiGaagvPgaglvalllvlsalglpvegialilaidrllDmfrTavNvtGdavaali 386
                 +++n+ G+++y ++aa+fiaq+++v+ls++++ +++l+++las G+agvP ++lv+l++++ ++++pv+gi l+++id +lDm+r+a+Nv+G+ +a+++
  CTQ29012.1 302 YSFNLVGSMVYCSFAAMFIAQAYNVPLSFSEITVMMLTLMLASKGIAGVPRSALVVLAATIPSFNIPVAGILLLMGIDHFLDMGRSAINVLGNGIATAM 400
                 *************************************************************************************************99 PP

         SDF 387 vak 389
                 ++k
  CTQ29012.1 401 LSK 403
                 886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3187.01
//
Query:       CTQ29013.1  [L=404]
Description: multidrug efflux system, subunit A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-16   57.6   4.7    3.5e-15   55.5   1.9    2.7  2  Biotin_lipoyl_2  Biotin-lipoyl like
    3.1e-13   50.3   2.3    1.5e-06   28.8   0.4    2.6  2  HlyD_3           HlyD family secretion protein
    1.9e-10   40.3   5.4    4.5e-10   39.1   5.4    1.7  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
     0.0013   18.5   1.5     0.0086   15.9   0.0    2.9  4  Biotin_lipoyl    Biotin-requiring enzyme
     0.0024   17.6   0.1      0.019   14.7   0.0    2.4  3  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
  ------ inclusion threshold ------
      0.068   13.4   0.7        2.9    8.2   0.0    2.9  2  Peptidase_M23    Peptidase family M23
      0.074   13.5   1.6       0.16   12.5   1.6    1.6  1  BMFP             Membrane fusogenic activity
      0.082   12.8   0.7       0.25   11.2   0.0    2.2  2  VWA_3_C          von Willebrand factor type A C-terminal doma
        0.1   12.3   0.1        4.3    7.1   0.0    2.6  2  PYNP_C           Pyrimidine nucleoside phosphorylase C-termin


Domain annotation for each model (and alignments):
>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   1.9   1.8e-18   3.5e-15       2      50 .]      78     126 ..      77     126 .. 0.97
   2 ?    1.6   0.1      0.13   2.6e+02       4      14 ..     188     198 ..     178     213 .. 0.75

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 1.8e-18
  Biotin_lipoyl_2   2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50 
                      +v++ ++v+G++ +l+ ++Gq+VkaGd+La++D++++++alaqa++qla
       CTQ29013.1  78 TVTVRSRVDGQLLSLHFQEGQQVKAGDLLAQIDPSQFKVALAQAQGQLA 126
                      69*********************************************96 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.13
  Biotin_lipoyl_2   4 sIaapvsGrVa 14 
                       I+ap++GrV 
       CTQ29013.1 188 RITAPIDGRVG 198
                      79*******95 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   2.7e-07   0.00054       1      47 [.      80     125 ..      80     150 .. 0.82
   2 !   28.8   0.4   7.6e-10   1.5e-06       2      96 ..     189     290 ..     188     297 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.7e-07
      HlyD_3   1 tlrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadl 47 
                 t+r+ vdG++ +l+ +eg+ v agd l++i p ++++v ++ ++ +l
  CTQ29013.1  80 TVRSRVDGQLLSLHFQEGQQVKAGDLLAQIDP-SQFKVALAQAQGQL 125
                 79****************************96.55555554444444 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 7.6e-10
      HlyD_3   2 lrApvdGvvvelnveegevvqagde..lleiippdtllveakvpaadlgsik...kkgqkvtlkld..qgsdytlkgkierisptvdaktgaykvevsl 93 
                 ++Ap+dG+v  ++v  g+ +++gd+  ++ ++ +  + v +++p+  ++++    k+g + ++++    ++++   g++ +++  +da+tg++k+++++
  CTQ29013.1 189 ITAPIDGRVGLKQVDIGNQISSGDTtgIVVLTQTHPIDVVFTLPESSIATVVqaqKAGKALSVEAWdrTNKQKISVGELLSLDNQIDATTGTIKLKARF 287
                 89*************************************************8888788888887776555555779********************999 PP

      HlyD_3  94 enp 96 
                 +n 
  CTQ29013.1 288 SNL 290
                 875 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   5.4   2.2e-13   4.5e-10      17     214 .]      76     300 ..      63     300 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 2.2e-13
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXX......XXXXXXXX..................XXXXXXXXXXX CS
    HlyD_D23  17 rrlarvsarveGwveklyvnatgdkVkkGqpLaelyspe....lvaaqeeyllalk......akkklkkke.................lleaarerLrl 88 
                  ++++v +rv+G   +l+ + +g++Vk+G+ La+++ ++    l++aq ++ + ++      +       +                 l  +++   ++
  CTQ29013.1  76 ANTVTVRSRVDGQLLSLHFQ-EGQQVKAGDLLAQIDPSQfkvaLAQAQGQLAKDQAtlanarR-------DlaryqqlvktnlvsrqeLDTQQSLVVES 166
                 56789***************.**************9765222266666666666664444330.......14566667777777665344444445677 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXX....XXXXXX CS
    HlyD_D23  89 lgvseeqiaelektgkvqktvtvkapisGvVteknvreGqyvqpgdt..lftiadlstVWveaevyeqqlalvkvgqkv..evtvealp....gktfeG 179
                  g  +++ a++++ +     + ++api+G V  k+v  G+ ++ gdt  ++ +++   + v++ ++e+ +a+v + qk+   ++vea +    +k   G
  CTQ29013.1 167 AGTVKADEAAVASAQLQLDWTRITAPIDGRVGLKQVDIGNQISSGDTtgIVVLTQTHPIDVVFTLPESSIATVVQAQKAgkALSVEAWDrtnkQKISVG 265
                 788888888899999999999************************997789999******************988777633345555431111445679 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 180 kvdyiyptvdpetRtvkvRieldNpdgkLkpgmfA 214
                 ++  ++ ++d++t t+k+ ++++N d++L p+ f+
  CTQ29013.1 266 ELLSLDNQIDATTGTIKLKARFSNLDDALFPNQFV 300
                 9*******************************996 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.3e-06    0.0086      43      73 .]      79     109 ..      77     109 .. 0.94
   2 ?   -3.7   0.0       5.8   1.1e+04      21      29 ..     164     172 ..     160     178 .. 0.49
   3 ?   -0.3   0.0      0.47   9.4e+02      44      68 ..     188     212 ..     185     217 .. 0.85
   4 ?   -2.2   0.0       1.9   3.8e+03      44      69 ..     239     267 ..     236     269 .. 0.52

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.3e-06
                    EEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl  43 meieapkaGvvkeilvkeGdtvevgdllaki 73 
                    +++ ++++G++ +++ +eG++v++gdlla+i
     CTQ29013.1  79 VTVRSRVDGQLLSLHFQEGQQVKAGDLLAQI 109
                    7899************************987 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.8
                    SSTTCEE-T CS
  Biotin_lipoyl  21 vkvGdkVka 29 
                    v+  ++Vka
     CTQ29013.1 164 VESAGTVKA 172
                    333334444 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.47
                    EEEBSSSEEEEEESSTTTEEE-TTC CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtvevgd 68 
                     i+ap +G+v    v+ G+++++gd
     CTQ29013.1 188 RITAPIDGRVGLKQVDIGNQISSGD 212
                    6899999999999999999999988 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.9
                    EEEBSSSEEEEEESS...TTTEEE-TTCE CS
  Biotin_lipoyl  44 eieapkaGvvkeilv...keGdtvevgdl 69 
                     ++a+kaG+  ++ +    + ++++vg+l
     CTQ29013.1 239 VVQAQKAGKALSVEAwdrTNKQKISVGEL 267
                    56777777655444311144555666655 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   9.6e-06     0.019      79     109 ..      85     115 ..      68     122 .. 0.83
   2 ?   -1.2   0.0      0.78   1.5e+03      39      49 ..     188     198 ..     171     222 .. 0.72
   3 ?   -2.9   0.0       2.7   5.4e+03      15      45 ..     288     318 ..     285     337 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.6e-06
                 TTTTTEEES----SEE-SEEEEEEE-HHHHG CS
  PTS_EIIA_1  79 lkgegFellvkegdkVkagdklvevdleaik 109
                 ++g+  +l+ +eg++Vkagd+l+++d+ + k
  CTQ29013.1  85 VDGQLLSLHFQEGQQVKAGDLLAQIDPSQFK 115
                 489999********************99877 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.78
                 EEEES--EEEE CS
  PTS_EIIA_1  39 kvvapvdGkve 49 
                 +++ap+dG+v 
  CTQ29013.1 188 RITAPIDGRVG 198
                 68888888874 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.7
                 GGSSSHHHHT-TTSEEEEEEE-SSEEEES-- CS
  PTS_EIIA_1  15 eevpDevfaekmlGdGvaiepsegkvvapvd 45 
                 +++ D  f ++ +   + ++ +++ vv p++
  CTQ29013.1 288 SNLDDALFPNQFVNARLLVDTQQNAVVIPAA 318
                 6778888999999888899988888888765 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0015       2.9      46      74 ..      83     111 ..      47     124 .. 0.72
   2 ?    2.0   0.1      0.12   2.4e+02      14      39 ..     187     210 ..     179     227 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0015
                    EEEEEEESEESS-TTEEE-TTCEEEEEBS CS
  Peptidase_M23  46 stlyahlskisvkegqkVkaGqvIGtvgs 74 
                    s + ++l +++ +egq+VkaG+ ++++  
     CTQ29013.1  83 SRVDGQLLSLHFQEGQQVKAGDLLAQIDP 111
                    4455667778899************9874 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.12
                    -EEEESSSEEE....EEEEEETTTEEEEEE CS
  Peptidase_M23  14 tpVlAaadGtV....vfagkkegyGnvvii 39 
                    t ++A+ dG+V    v +g+       +  
     CTQ29013.1 187 TRITAPIDGRVglkqVDIGN------QISS 210
                    67899999999544444444......3322 PP

>> BMFP  Membrane fusogenic activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.6   7.9e-05      0.16      37      73 ..     142     178 ..     108     181 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.9e-05
        BMFP  37 qealsklDLVtREEFdvqrevlartrekleaLearva 73 
                  ++l k +LV+R+E+d q+ ++ +    ++a ea va
  CTQ29013.1 142 YQQLVKTNLVSRQELDTQQSLVVESAGTVKADEAAVA 178
                 37899***************99888777777666665 PP

>> VWA_3_C  von Willebrand factor type A C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3       3.6   7.2e+03      25      34 ..      77      84 ..      71      86 .. 0.52
   2 ?   11.2   0.0   0.00013      0.25      22      39 ..     274     291 ..     269     294 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.6
                TT--EEE-SS CS
     VWA_3_C 25 atGTVRLkkk 34
                 t TVR  ++
  CTQ29013.1 77 NTVTVR--SR 84
                344554..44 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00013
                 .-TTT--EEE-SS--HHH CS
     VWA_3_C  22 vDpatGTVRLkkkVdkaD 39 
                  D++tGT++Lk++ ++ D
  CTQ29013.1 274 IDATTGTIKLKARFSNLD 291
                 5***********998877 PP

>> PYNP_C  Pyrimidine nucleoside phosphorylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0022       4.3      35      53 ..      91     109 ..      90     126 .. 0.84
   2 ?    2.2   0.0      0.07   1.4e+02      25      49 ..     190     213 ..     172     219 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0022
                 EES--TT-EEBTTSEEEEE CS
      PYNP_C  35 elhkklGdkVkkGeplati 53 
                 +lh + G++Vk+G+ la i
  CTQ29013.1  91 SLHFQEGQQVKAGDLLAQI 109
                 799**************98 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.07
                 TS---TT-EEEES--TT-EEBTTSE CS
      PYNP_C  25 eDpidlavGielhkklGdkVkkGep 49 
                 + pid +vG+++ + +G++++ G++
  CTQ29013.1 190 TAPIDGRVGLKQ-VDIGNQISSGDT 213
                 789*******96.789****99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2884.45
//
Query:       CTQ29014.1  [L=1040]
Description: multidrug transport protein (RND family) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
          0 1212.1  28.5          0 1212.0  28.5    1.0  1  ACR_tran       AcrB/AcrD/AcrF family
      4e-09   35.8   9.7      4e-09   35.8   9.7    2.8  3  MMPL           MMPL family
    2.7e-07   30.2  27.4    0.00011   21.7  15.4    2.6  2  SecD_SecF      Protein export membrane protein
  ------ inclusion threshold ------
      0.055   12.6   0.1       0.19   10.8   0.0    1.8  2  PHTB1_C        PTHB1 C-terminus
       0.27   10.3   0.5       0.54    9.3   0.5    1.4  1  Man-6-P_recep  Mannose-6-phosphate receptor


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1212.0  28.5         0         0       2    1020 ..      13    1022 ..      12    1023 .. 1.00

  Alignments for each domain:
  == domain 1  score: 1212.0 bits;  conditional E-value: 0
                  HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS- CS
    ACR_tran    2 ikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtd 98  
                  +++fi+rp+++++l+++ill+Gi++++ lPv+alPe+++pt+qv t ypGasp+vv+s++t+plE+++ +++glk++sSqSs g+s +tl+F+ + +
  CTQ29014.1   13 SRLFIMRPVATTLLMVAILLAGIIGYRFLPVSALPEVDYPTIQVVTLYPGASPDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLP 109 
                  689********************************************************************************************** PP

                  HHHHHHHHHHHHHHHGGGS-HHH.HHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHHH CS
    ACR_tran   99 idiArqqvqnrlqeaknkLPeev.qepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkla 194 
                  +d+A+q+vq+++++a+n LP+++ ++p +sk+++++ +i++lavts+  ++++t+++d++et++++++s+v+GVg v+l Gg+++avr++l++q++a
  CTQ29014.1  110 LDVAEQEVQAAINAATNLLPSDLpNPPVYSKVNPADPPIMTLAVTSS--AIPMTQVEDMVETRVAQKISQVSGVGLVTLAGGQRPAVRVKLNAQAIA 204 
                  ***********************999*********************..************************************************ PP

                  CTT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEEETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEEEEEETTSB CS
    ACR_tran  195 klgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivknqdgskvrlrDvAkVelgaeeerlaatfngkpavllevkklpgan 291 
                  +lglt ++v++a++++nvn+a+G+l+g  ++++++a++q+qsaed++++i+++q+g+++rl+DvA Ve+gae+++l a++n++ a++++v+++pgan
  CTQ29014.1  205 ALGLTSETVRTAITSANVNSAKGSLDGPARAVTLSANDQMQSAEDYRRLIIAYQNGAPIRLGDVASVEQGAENSWLGAWANQQRAIVMNVQRQPGAN 301 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHH CS
    ACR_tran  292 aievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNlltL 388 
                  +i++a++++++l++L+eslP++v+++v+ drt+ +ras+++++++L++ai+Lvv++++lFL+n+ at+ip++avPlsl+gtfav+++l+fs+N+ltL
  CTQ29014.1  302 IIDTADSIRQMLPQLTESLPKSVKVQVLSDRTTNIRASVRDTQFELMLAIALVVMIIYLFLRNVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTL 398 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
    ACR_tran  389 fgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltltPal 485 
                  ++L++A+G+vvDdAiVv+Eni+r++e+ gekpl+aalk+++ei++++++++++l+av++P+lf+g+++G+lfr+fa+t+++ail+s++v+ltltP++
  CTQ29014.1  399 MALTIATGFVVDDAIVVIENISRYIEK-GEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMM 494 
                  ***************************.********************************************************************* PP

                  HHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB-HHHHHHHHHH CS
    ACR_tran  486 callLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgvsleqtqkvlkq 582 
                  ca++L++++ +k+++f r+++r+fe++ + Y++ l++vl+h++++l val +l+ls++l+v+ipk f+P +d+g ++ ++q+p++vs++ +++ ++q
  CTQ29014.1  495 CARMLSHESLRKQNRFSRASERFFERVIAVYGRWLSRVLNHPWLTLGVALSTLALSIILWVFIPKGFFPIQDNGIIQGTLQAPQSVSFASMAERQRQ 591 
                  ************************************************************************************************* PP

                  HHHHHHTTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSSSCEEEEEEE.SSS CS
    ACR_tran  583 vekilkekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletlsgvrselqvklfg 679 
                  v++i+ ++p+ves+++++G+  +g++   nsa+++i+Lkp +er   +++v+ +i+rl+++++ +pg+++ l+++++l++  +++++r+++q++l++
  CTQ29014.1  592 VASIILKDPAVESLTSFVGV--DGTNPALNSARLQINLKPLDER---DDRVQTVISRLQQAVDGVPGVALYLQPTQDLTI--DTTVSRTQYQFTLQA 681 
                  *******************8..9999******************...99*******************************..88999********** PP

                  SHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE-GGGSSSGGGGC CS
    ACR_tran  680 ddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvrleedlrsspedlk 776 
                  ++leaLs++++ ll+ l+++p+l+dv+s++q++    ++++dr++a+rlG+s++d++++l +a+g++ ++++++++++++vv++++++ + ++ +l+
  CTQ29014.1  682 NSLEALSTWVPPLLSRLQAQPQLADVSSDWQDKGLAAYIKVDRDSASRLGISMADVDNALYNAFGQRLISTIYTQANQYRVVLEQDTEATPGLAALE 778 
                  ************************************************************************************************* PP

                  CSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHHHHCHHHHHHHHHHH CS
    ACR_tran  777 klkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqeqeasnsllilvalall 873 
                  ++++++++g +vpl+a+a++e++  p s+++ +++++++is+nv++++sl+ea ea+ ++++ + +p++++++++g++ ++q+a +s+++lv++a++
  CTQ29014.1  779 NIRLTSSDGGIVPLTAIATVEQRFTPLSVNHLDQFPVTTISFNVPDNYSLGEAVEAILAAEQSLDFPTDIRTQFQGSSLAFQSALGSTVWLVVAAVV 875 
                  ************************************************************************************************* PP

                  HHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHCHHHHHHHH CS
    ACR_tran  874 lvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaileaakeRLrPiLMTa 970 
                  ++++vL++lyes+++p++il+t+P+a vGallal+l+g+el+via++G+illiG+++kNai++++fa  +++++g+ ++eai++a++ R+rPiLMT+
  CTQ29014.1  876 AMYIVLGVLYESFIHPITILSTLPTAGVGALLALWLAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMPPREAIYQACLLRFRPILMTT 972 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  971 laailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlv 1020
                  laa+lG+lPL+lstg+G+el++plgi+++gGl++s+vLtL+++Pv+Y+l+
  CTQ29014.1  973 LAALLGALPLMLSTGVGAELRRPLGIGMVGGLMLSQVLTLFTTPVIYLLF 1022
                  ************************************************98 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   9.7   1.1e-12     4e-09      85     319 ..     287     518 ..     209     536 .. 0.71
   2 ?   -3.7   0.1       1.2   4.4e+03      87     126 ..     620     667 ..     583     676 .. 0.57
   3 ?    1.8   7.6     0.027        95     104     255 ..     829     972 ..     814    1035 .. 0.64

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.1e-12
        MMPL  85 gkaaralvtlegdpgsteadesvaairaaveear..pleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsl 181
                 ++a+ + v+ +        +++++ ir+++ +++   ++++kv+v    +t+     as rd+++  +++++++++i  + +r++ a ++p + v +sl
  CTQ29014.1 287 QRAIVMNVQRQP---GANIIDTADSIRQMLPQLTesLPKSVKVQVLSDRTTNIR---ASVRDTQFELMLAIALVVMIIYLFLRNVPATIIPGVAVPLSL 379
                 555555555553...344456777777777777743356666666665555555...888999************************************ PP

        MMPL 182 laalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvv...taaGltvaiamlgLvvarlpvlaqvG 277
                 + ++++ +++ ++++ +l+ ++l++++    +  +D a+ ++  +  ++++ge+  +a+ +  + +g ++   t++ + v i +l +  +  + +++++
  CTQ29014.1 380 VGTFAV-MVFLDFSINNLTLMALTIAT----GFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIislTFSLIAVLIPLLFMGDIVGRLFREFA 473
                 *****9.66666666666655555554....5557***************************9999988833356666666777777777899****** PP

        MMPL 278 vaialGvlvdvlivlTllPAllvl.lGraalakprrkrkk..rwW 319
                 v++a+++l+++ ++lTl+P +++  l+   l k++r  +   r++
  CTQ29014.1 474 VTLAVAILISAVVSLTLTPMMCARmLSHESLRKQNRFSRAseRFF 518
                 *******************99985255554444433322234333 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.2
        MMPL  87 aaralvtle.gdpgsteadesvaairaaveear.......pleglkve 126
                 +ar++++l+ +d+ ++  +  + ++++av+  +       p+++l++ 
  CTQ29014.1 620 SARLQINLKpLDERDDRVQTVISRLQQAVDGVPgvalylqPTQDLTID 667
                 567777776234455555555566666666665666666666666665 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.027
        MMPL 104 desvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstf 202
                  e+v+ai aa ++++ +++++ +  G++++++     +  ++  ++v+++v   ++L ++y S++ ++ +l t       + g+ ++lal l+    ++
  CTQ29014.1 829 GEAVEAILAAEQSLDFPTDIRTQFQGSSLAFQS----ALGSTVWLVVAAVVAMYIVLGVLYESFIHPITILSTLP-----TAGVGALLALWLAGSELDV 918
                 577888888888888999999*****9999999....55566666777777777888899999999988876643.....2222223333333333344 PP

        MMPL 203 vlgllvvlliavGtDYallLvs.RyreelaagedreeaviravastgkvvtaaG 255
                 ++ + ++lli++    a++++   +  e+++g   +ea+++a     + +++ +
  CTQ29014.1 919 IAIIGIILLIGIVKKNAIMMIDfALAAEREQGMPPREAIYQACLLRFRPILMTT 972
                 556667777777666666666424566666666666666666665555555555 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7  15.4     3e-08   0.00011      35     180 ..     347     492 ..     326     501 .. 0.81
   2 !   13.6   4.1   9.2e-06     0.033      31     179 ..     864    1015 ..     839    1024 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3e-08
                 HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHHH CS
   SecD_SecF  35 lallialvliliyvalrFewrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnqtLt 133
                 l l+ialv+++iy++lr   +  +   +a+   ++ t +v++ l + ++  t++al    G+ v+d +vv + +   ++k  +++l+ +++ + +  +t
  CTQ29014.1 347 LMLAIALVVMIIYLFLRNV-PATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEK-GEKPLAAALKGAGEIGFT 443
                 5678899999999988843.3334444667778999***************************************99887.889*********999998 PP

                 HHHHTTHH.HHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHH CS
   SecD_SecF 134 rtiltslt.tllvvvallllgg...dslkdfalallvGlivgtyssifias 180
                   i+     ++ v++ ll++g+   +  ++fa++l v++++ ++ s+ +  
  CTQ29014.1 444 --IISLTFsLIAVLIPLLFMGDivgRLFREFAVTLAVAILISAVVSLTLTP 492
                 ..554444155566778888877778999**********999888876655 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 9.2e-06
                  HHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHH.HHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHH CS
   SecD_SecF   31 ekavlallialvliliyvalrFewrvalaaiia.lvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinl 126 
                   + v+ +++a+v++ i++++ +e  +    i++ l    + ++ +l l g e+d+ ++++++ +iG   ++ +++ d      ++++ ++ +e+i +
  CTQ29014.1  864 GSTVWLVVAAVVAMYIVLGVLYESFIHPITILStLPTAGVGALLALWLAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAA-EREQGMPPREAIYQ 959 
                  56899*******************98776666636666677778888999***************************99888.78899********* PP

                  HHHHHHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHH CS
   SecD_SecF  127 slnqtLtrtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifia 179 
                  +    +   ++t+l +ll ++ l+l +g   +  + + + ++ Gl++  + ++f+ 
  CTQ29014.1  960 ACLLRFRPILMTTLAALLGALPLMLSTGvgaELRRPLGIGMVGGLMLSQVLTLFTT 1015
                  ***********************998764434555566666666666666666655 PP

>> PHTB1_C  PTHB1 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.58   2.1e+03     262     296 ..     326     360 ..     311     379 .. 0.82
   2 ?   10.8   0.0   5.2e-05      0.19     125     182 ..     648     705 ..     615     724 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.58
     PHTB1_C 262 vialadaleeaekklekaanrLssalqLlllllkl 296
                 v  l+d+ ++++++++ ++ +L  a++L+++++ l
  CTQ29014.1 326 VQVLSDRTTNIRASVRDTQFELMLAIALVVMIIYL 360
                 55678899999999999999999999999999865 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 5.2e-05
     PHTB1_C 125 eeesttnalglqylngskvTilasKtsqRYRiQSdelealwLvlkeLieRLkahfskq 182
                 +++  + al lq +++ ++   +s+t+  + +Q ++leal+  +  L+ RL+a+ + +
  CTQ29014.1 648 VDGVPGVALYLQPTQDLTIDTTVSRTQYQFTLQANSLEALSTWVPPLLSRLQAQPQLA 705
                 566677899999999999999*******************************987665 PP

>> Man-6-P_recep  Mannose-6-phosphate receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.5   0.00015      0.54     164     191 ..     862     889 ..     850     903 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00015
  Man-6-P_recep 164 svGsillivllslvavyligGflyqrlv 191
                    ++Gs + +v++++va+y++ G+ly  ++
     CTQ29014.1 862 ALGSTVWLVVAAVVAMYIVLGVLYESFI 889
                    689*********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1040 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1035  (0.0577277); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.47
# Mc/sec: 6603.58
//
Query:       CTQ29015.1  [L=1025]
Description: multidrug efflux system, subunit C [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1207.7  12.9          0 1207.5  12.9    1.0  1  ACR_tran   AcrB/AcrD/AcrF family
    4.1e-10   39.3  17.5    2.1e-06   27.2   5.3    2.5  2  SecD_SecF  Protein export membrane protein
    2.1e-09   36.8  27.5    2.4e-07   30.0   8.2    3.2  4  MMPL       MMPL family
  ------ inclusion threshold ------
      0.031   12.3  10.4      0.052   11.6  10.4    1.2  1  Patched    Patched family


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1207.5  12.9         0         0       2    1020 ..       4    1008 ..       3    1009 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1207.5 bits;  conditional E-value: 0
                  HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEETTSEEEEEEEESTTS- CS
    ACR_tran    2 ikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqSseglssitltFedgtd 98  
                  +++fi rp+++++++l+i+l+Gil+++ lPv+ lP++++p + vs+s+pGaspe+++s+v++plE++l +++g+++++S+Ss g+++i+l+F+ ++d
  CTQ29015.1    4 FALFIYRPVATILISLAITLCGILGFRLLPVAPLPQVDFPVIMVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRD 100 
                  689********************************************************************************************** PP

                  HHHHHHHHHHHHHHHGGGS-HHH.HHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHHH CS
    ACR_tran   99 idiArqqvqnrlqeaknkLPeev.qepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkla 194 
                  i+ A+++vq+++++a++ LP+++ ++p+++k+++s+++i++l++ts+  ++++ el+d+a+t++++++++++GVgdv++ G+s +avr+ l+pq+l 
  CTQ29015.1  101 INGAARDVQAAINAAQSLLPSGMpSRPTYRKANPSDAPIMILTLTSD--TYSQGELYDFASTQLAQTIAQIDGVGDVDVGGSSLPAVRVDLNPQALF 195 
                  ***********************************************..************************************************ PP

                  CTT--HHHHHHHHHHHSSB-EEEEETT-SB-EEEEESB---SHHHHHTSEEEETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEEEEEETTSB CS
    ACR_tran  195 klgltltdvvsalkeqnvnvaaGqlegqeeelliraqgqlqsaediekiivknqdgskvrlrDvAkVelgaeeerlaatfngkpavllevkklpgan 291 
                  ++g++l+ v++a++ +nv+ ++G+le++ ++++++++++l++a+d++ +iv++q+g++vrl+DvA+V ++ ++ r+a+++n kpa+ll+++klp+an
  CTQ29015.1  196 NQGVSLDAVRTAISDANVRKPQGALEDSAHRWQVQTNDELKTAADYQPLIVHYQNGAAVRLGDVATVSDSVQDVRNAGMTNAKPAILLMIRKLPEAN 292 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHH CS
    ACR_tran  292 aievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNlltL 388 
                  +i+++++++++l+eL++++P+++++++++dr++++ras+eeV++tL+++++Lv+lvvflFL++ ratlipa+avP+sl+gtfa+++++gfslN+l+L
  CTQ29015.1  293 IIQTVDSIRARLPELQQTIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSL 389 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
    ACR_tran  389 fgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltltPal 485 
                  ++L++A+G+vvDdAiVv+Eni+r+le+ g+kpl+aal++++e+++++++++l+l+avflP+l++gG+ G+l r+fa+t+++ai++s+ v+ltltP++
  CTQ29015.1  390 MALTIATGFVVDDAIVVLENISRHLEA-GMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGISLAVSLTLTPMM 485 
                  ***************************.********************************************************************* PP

                  HHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB-HHHHHHHHHH CS
    ACR_tran  486 callLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgvsleqtqkvlkq 582 
                  c++lLk  k ++  ++ r f rl+ a++ +Y+k+l++vl+h++++ lv+l +++lsv+l+++ipk+f+Pe+d+gvl+  +q+++++s+++++ +l++
  CTQ29015.1  486 CGWLLKSGKPHQP-TRNRGFGRLLVAVQGGYGKSLKWVLKHSRLTGLVVLGTIALSVWLYISIPKTFFPEQDTGVLMGGIQADQSISFQAMRGKLQD 581 
                  ******9998776.899******************************************************************************** PP

                  HHHHHHTTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSSSCEEEEEEE.SSS CS
    ACR_tran  583 vekilkekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletlsgvrselqvklfg 679 
                  ++ki++e+p+v++v+ +tG       +++ns+++fi+Lkp+++r   +++++++i+rlrk+l++ pgan++l+a++++r+    +++++++q++l +
  CTQ29015.1  582 FMKIIREDPAVDNVTGFTGG------SRVNSGMMFITLKPRDQR---HETAQQVIDRLRKKLANEPGANLFLMAVQDIRV--GGRQSNASYQYTLLS 667 
                  *******************5......79***************9...9********************************..89999********** PP

                  SHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE-GGGSSSGGGGC CS
    ACR_tran  680 ddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvrleedlrsspedlk 776 
                  ddl+aL+e+++++++al++lpel+dv+s+qq++ +++++ +dr++++rlG+s++d n++l++a+g+++++++++  +++kvv++++ ++++++++l+
  CTQ29015.1  668 DDLSALREWEPKIRKALAALPELADVNSDQQDNGAEMDLVYDRDTMSRLGISVQDANNLLNNAFGQRQISTIYQPLNQYKVVMEVDPAYTQDVSALD 764 
                  ************************************************************************************************* PP

                  CSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHHHHCHHHHHHHHHHH CS
    ACR_tran  777 klkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqeqeasnsllilvalall 873 
                  k++v n++gk +pl+++ak++ +++p s++++  s++++is+n+++g slsea+ea++++++++ +p++v+ +++g+a+ +q+++n ++il+ +a+ 
  CTQ29015.1  765 KMFVINSDGKPIPLAYFAKWQPANAPLSVNHQGLSAASTISFNLPTGRSLSEASEAIDRAMTQLGVPSSVRGSFAGTAQVFQQTMNAQVILILAAIA 861 
                  ************************************************************************************************* PP

                  HHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHCHHHHHHHH CS
    ACR_tran  874 lvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaileaakeRLrPiLMTa 970 
                  +v++vL++lyes+++pl+il+t+P a vGallal ++++++s+ia++G++lliG+++kNai++v+fa e+++++++++eeai++a++ R+rPi+MT+
  CTQ29015.1  862 TVYIVLGVLYESYVHPLTILSTLPSAGVGALLALEIFDAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTPEEAIFQACLLRFRPIMMTT 958 
                  ************************************************************************************************* PP

                  HHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  971 laailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlv 1020
                  laa++G+lPL+ls g+Gsel+qplgi+++gGlv+s++LtL+++Pv+Y+++
  CTQ29015.1  959 LAALFGALPLVLSGGDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFF 1008
                  ***********************************************998 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   5.3   4.8e-10   2.1e-06      35     177 ..     338     480 ..     298     491 .. 0.79
   2 !   17.4   4.3   4.9e-07    0.0022      24     180 ..     843    1002 ..     827    1010 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 4.8e-10
                 HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHHH CS
   SecD_SecF  35 lallialvliliyvalrFewrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnqtLt 133
                 l + +alv+++++++lr  +   +   +a+   +i t +++ l g+ ++  +++al    G+ v+d +vv + +  +l+    ++l+ +++ s +  +t
  CTQ29015.1 338 LVISVALVILVVFLFLRSGRATLIP-AVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEA-GMKPLQAALQGSREVGFT 434
                 2333444444444444444444344.44566779999****************************************877.8899*******9999998 PP

                 HHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHH CS
   SecD_SecF 134 rtiltslttllvvvallllgg...dslkdfalallvGlivgtyssif 177
                   +  sl+++ v + lll+gg   + l++fa++l v++ +    s+ 
  CTQ29015.1 435 -VLSMSLSLVAVFLPLLLMGGlpgRLLREFAVTLSVAIGISLAVSLT 480
                 .455566677777899999988889**********999887777765 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 4.9e-07
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHH.HHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS- CS
   SecD_SecF   24 svskelaekavlallialvliliyvalrFewrvalaaiia.lvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkrat 119 
                  +v ++ ++  v+ +l+a++ + i++++ +e +v    i++ l +  + ++ +l ++  +++l ++++++ +iG   ++ +++ d   e  +++ + t
  CTQ29015.1  843 QVFQQTMNAQVILILAAIATVYIVLGVLYESYVHPLTILStLPSAGVGALLALEIFDAPFSLIALIGIMLLIGIVKKNAIMMVDFALEA-QRNGNLT 938 
                  667889999**********************998777777588888899999***********************************99.7779999 PP

                  HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHH CS
   SecD_SecF  120 lkeiinlslnqtLtrtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifias 180 
                   +e+i ++    +   ++t+l +l+ ++ l+l gg   +  + + ++++ Gl++  + ++++  
  CTQ29015.1  939 PEEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGdgsELRQPLGITIVGGLVMSQLLTLYTTP 1002
                  99999999999999999****************9954333445667777777777777777655 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.2       1.2   5.5e+03     173     192 ..      11      30 ..      10      37 .. 0.79
   2 !   30.0   8.2   5.3e-11   2.4e-07      62     314 ..     257     502 ..     201     517 .. 0.72
   3 ?   -2.6   0.1      0.44     2e+03     165     183 ..     525     543 ..     519     550 .. 0.83
   4 !   19.9   2.2   6.3e-08   0.00028      73     304 ..     785    1010 ..     687    1022 .. 0.74

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.2
        MMPL 173 plltvvvsllaalglvlila 192
                 p++t+++sl+++l  +l ++
  CTQ29015.1  11 PVATILISLAITLCGILGFR 30 
                 79999999999998766665 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 5.3e-11
        MMPL  62 khvgevsdflsdpdvaaafvSkDgkaaralvtlegdpgsteadesvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviL 160
                 ++v+ vsd    +dv++a + + + a+ ++++      +   +++v+ ira + e++ + ++++ +   a    ++  as +++  + v+++++++++ 
  CTQ29015.1 257 GDVATVSDS--VQDVRNAGMTNAKPAILLMIRKLP---EANIIQTVDSIRARLPELQQTIPAAIDLQI-AQDRSPTIRASLEEVEQTLVISVALVILVV 349
                 555555555..444555555555555555555443...333344455555555555544444444443.4444566677888899999*********** PP

        MMPL 161 livyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgkvvtaaGltva 259
                 ++ +rS  a l+p + v vsl+ +++      +l g+ l++ +l+ +  ++ +  +D a+ ++  +   l+ag +  +a+ +  + +g +v+   l ++
  CTQ29015.1 350 FLFLRSGRATLIPAVAVPVSLIGTFAA----MYLCGFSLNNLSLM-ALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGSREVGFTVLSMSLSLV 443
                 ***************************....55667777777653.4445566668************************************9999888 PP

        MMPL 260 iamlgLvva...rlpvlaqvGvaialGvlvdvlivlTllPAllvllGraa.lakprrkr 314
                 + +l L+++     + l++++v++++++ ++++++lTl+P ++  l +++ + +p r+r
  CTQ29015.1 444 AVFLPLLLMgglPGRLLREFAVTLSVAIGISLAVSLTLTPMMCGWLLKSGkPHQPTRNR 502
                 8888766541115689****************************999998788888776 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.44
        MMPL 165 rSlvaallplltvvvslla 183
                  S ++ l++l+t+++s+ +
  CTQ29015.1 525 HSRLTGLVVLGTIALSVWL 543
                 577899**********976 PP

  == domain 4  score: 19.9 bits;  conditional E-value: 6.3e-08
        MMPL   73 dpdvaaafvSkDgkaaralvtlegdpgsteadesvaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlva 169 
                  +p  a + v   g +a  ++++++ +g +++ e+ +ai +a +++  +++++ + +G+a +++     +++   ++++++++ + ++L ++y S v 
  CTQ29015.1  785 QPANAPLSVNHQGLSAASTISFNLPTGRSLS-EASEAIDRAMTQLGVPSSVRGSFAGTAQVFQQ----TMNAQVILILAAIATVYIVLGVLYESYVH 876 
                  4556777777888899999999986666666.88899********99***************99....77788899999999**************9 PP

        MMPL  170 allplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaage.dreeaviravastgkvvtaaGltvaiamlgL 265 
                  +l +l t     l + g+ ++lal  + +  + ++ + ++lli++    a+++v    e+ ++g  + eea+ +a     + +++ +l   +  l L
  CTQ29015.1  877 PLTILST-----LPSAGVGALLALEIFDAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRNGNlTPEEAIFQACLLRFRPIMMTTLAALFGALPL 968 
                  9998765.....4444444444444444444555667899999**9999999999999988888625688******999999999999999999999 PP

        MMPL  266 vvar...lpvlaqvGvaialGvlvdvlivlTllPAllvllGr 304 
                  v++     +  + +G++i  G++++ l++l  +P +  ++ r
  CTQ29015.1  969 VLSGgdgSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDR 1010
                  99853336777779**********999888777877776655 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  10.4   1.2e-05     0.052     661     805 ..     336     485 ..     323     490 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.2e-05
     Patched 661 qnivlallcmfvvallfipelitvlvitlsivsidigviGflslWgvdLDpismitiimsiGfsvdlsaHiayafvrsekddakeRvveale...algw 756
                 q++v++++++++v +lf+ +  + l+ ++++    ig++  + l g  L  +s++++ +++Gf vd +  +  +++r  +    + +++al+   ++g+
  CTQ29015.1 336 QTLVISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLE-AGMKPLQAALQgsrEVGF 433
                 8999*****************99999999998889*******************************98888888877776.555556666643339*** PP

     Patched 757 PvvqgalSTilgvlvLlf...vdsymvqvFfktvvLvvvigllHgLlilPil 805
                  v+  +lS ++  l Ll+    +  + + F+ t++  + i+l   L + P++
  CTQ29015.1 434 TVLSMSLSLVAVFLPLLLmggLPGRLLREFAVTLSVAIGISLAVSLTLTPMM 485
                 ********998888777623369999*******9999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1025 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.34s 00:00:01.14 Elapsed: 00:00:00.46
# Mc/sec: 6656.37
//
Query:       CTQ29016.1  [L=471]
Description: multidrug efflux system protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-46  156.9  50.6    6.3e-46  156.9  50.6    2.6  2  MFS_1     Major Facilitator Superfamily
    1.1e-08   33.9  28.2    1.4e-08   33.6  14.3    2.2  2  MFS_3     Transmembrane secretion effector
    2.2e-06   26.8  10.5    2.2e-06   26.8  10.5    3.2  3  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.9  50.6   1.1e-49   6.3e-46       1     352 [.      15     405 ..      15     406 .. 0.89
   2 !    2.6   1.0    0.0084        50     218     265 ..     401     451 ..     400     465 .. 0.67

  Alignments for each domain:
  == domain 1  score: 156.9 bits;  conditional E-value: 1.1e-49
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 +++++f+ +l+ +i+++alp  +a++lg sp  ++++++ y l+ av+ +  G+l+dr+G r +++++++lf +g+l+++  +s    l+ +rvlqG+g
  CTQ29016.1  15 VAFGFFMQSLDTTIVNTALP-SMAKSLGESPLHMHMIIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTAGSLFCA-QASTLdQLVMARVLQGVG 111
                 589*****************.9*****************************************************77777.466677************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 +++++p+g   + +++p+++ + a+ ++++  ++G++lgp+lgg+l+++++W+++f+i+ +v++++++  l+l+p    + +r+     +         
  CTQ29016.1 112 GAMMVPVGRLTVMKIVPRDQYMAAMTFVTLPGQVGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAIATLCLMPNYTMQTRRFDLSGFLllaagmatl 210
                 ********************************************************************7778886666666666555555889999999 PP

       MFS_1 189 ..................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllall 253
                                                   ++   ++l++ + +++++ +  + l +++ + +g  +l +++p++lq  lg+s  + agl++  +
  CTQ29016.1 211 tlaldgqkglgispawlaglvavglcalllylwhARGNARALFS-LNLFRNRTFS-LGLGGSFAGRIGSGMLPFMTPVFLQIGLGFS-PFHAGLMMIPM 306
                 99998888888888888899999999999999888888888888.6666666633.477777777777888****************.79999888888 PP

       MFS_1 254 alvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll...vlvliGfglgfvfpsllalasdlappeeagtasglfntagslgg 349
                  l++++++ ++ ++++r+g rr l+ + l+l++++l++++ a++    ++++   vl+l G+  +  f+s+++l+ + +p + a + ++l +++ +l++
  CTQ29016.1 307 VLGSMGMKRIVVQVVNRFGYRRVLVASTLGLAAVSLLFMFSALA---GWYYVlplVLFLQGMINASRFSSMNTLTLKDLPDDLASSGNSLLSMVMQLSM 402
                 88888889999999******************************...55555566888899999999******************************** PP

       MFS_1 350 alg 352
                 ++g
  CTQ29016.1 403 SIG 405
                 *98 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.0084
       MFS_1 218 lfffgfsglltllplylqevlgls......glllaglllallalvgailallag 265
                 ++++g++++  ll ly q+++ l+          ++++l+++a++++++ l+++
  CTQ29016.1 401 SMSIGVTIAGLLLGLYGQQHMSLDaasthqV--FLYTYLSMAAIIALPA-LIFS 451
                 5677888899999999999999999888642..3333366666666555.3444 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6  14.3   2.3e-12   1.4e-08      21     186 ..      21     182 ..       4     240 .. 0.85
   2 !    6.2   6.0   0.00046       2.8      69     171 ..     321     421 ..     285     451 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 2.3e-12
       MFS_3  21 vsnlGtliqevaasWlmtdisasplmvAlvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaal 119
                 + +l t i + a   +  ++  spl + ++ ++  L + ++   +G laD +  R++++++ +l  ++s++ +  ++l+      l++  +l g+G a+
  CTQ29016.1  21 MQSLDTTIVNTALPSMAKSLGESPLHMHMIIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTAGSLFCAQASTLD-----QLVMARVLQGVGGAM 114
                 4555556666666677789999*****************99999************************99988777665.....567788999****** PP

       MFS_3 120 ndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavGaalafavna.lsylalival 186
                 + P  + +v  +v+r++  aA++  ++   +    GPAlgGvlv  +   + f +n  +  +  i++l
  CTQ29016.1 115 MVPVGRLTVMKIVPRDQYMAAMTFVTLPGQVGPLLGPALGGVLVEYASWHWIFLINIpVGIVGAIATL 182
                 *****************************************************999623444445444 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00046
       MFS_3  69 aDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAlgGvlvaavG 167
                  + f  R+vl+a  l la+vs+l + +a+ g   +  l+   +l g+  a    + +  +   ++ +  ++   L s+ + ++ s+G  ++G+l+ + G
  CTQ29016.1 321 VNRFGYRRVLVASTLGLAAVSLLFMFSALAGWYYVLPLV--LFLQGMINASRFSSMNTLTLKDLPDDLASSGNSLLSMVMQLSMSIGVTIAGLLLGLYG 417
                 456778999999999999999999999999988777665..4567777777777777777777888888999999999999999999999999999999 PP

       MFS_3 168 aala 171
                     
  CTQ29016.1 418 QQHM 421
                 7643 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8  10.5   3.7e-10   2.2e-06      10     203 ..      20     194 ..      10     199 .. 0.85
   2 !    6.9   0.9   0.00041       2.5     290     357 ..     167     236 ..     156     243 .. 0.85
   3 ?   -1.6   8.9      0.15   8.9e+02      50     114 ..     301     365 ..     272     450 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.7e-10
                 HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGG CS
    Sugar_tr  10 llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivg 108
                 +++           +l  ++ n  l +  +s  es + + +i  ++++  ++    +g+l+dr+G ++++ +a+vlf +g++ +a a    ++ +l+++
  CTQ29016.1  20 FMQ-----------SLDTTIVNTALPSMAKSLGESPLHMHMIIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTAGSLFCAQAS---TLDQLVMA 104
                 444...........444444444455555555666677888999999999999999*****************************999...9******* PP

                 HHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT- CS
    Sugar_tr 109 RvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgk 203
                 Rvl G+g  +   +  +++ +i p +   a +++  l  ++G l++  +g +l ++ +   w++ + +++   ++ +i+ l l   P+y+++ ++
  CTQ29016.1 105 RVLQGVGGAMMVPVGRLTVMKIVPRDQYMAAMTFVTLPGQVGPLLGPALGGVLVEYAS---WHWIFLINIPVGIVGAIATLCLM--PNYTMQTRR 194
                 **********************************************************...************99999987776..788777665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00041
                 HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS.......CHHHHHHHH CS
    Sugar_tr 290 llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks....kaasivaivfia 357
                 +l++i vg+v ++at++ ++     +RR + l G++  a+ ++ l+  al ++++      + ++++ v+++
  CTQ29016.1 167 FLINIPVGIVGAIATLCLMPNYTMQTRR-FDLSGFLLLAAGMATLT-LALDGQKGLgispAWLAGLVAVGLC 236
                 899*************************.99999999999999998.8888888876666677777777666 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.15
                 HHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHH CS
    Sugar_tr  50 livsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGi 114
                 l++  +++G++    ++  +++rfG++ +l+++++ + + ++l +++  +  ++vl +  +l G+
  CTQ29016.1 301 LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVASTLGLAAVSLLFMFSALAGWYYVLPLVLFLQGM 365
                 44444555555555666667777777777777777777777777777766667777666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3322.01
//
Query:       CTQ29017.1  [L=492]
Description: sensory histidine kinase in two-component regulatory system with BaeR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-19   68.8   0.0      1e-18   67.9   0.0    1.5  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    4.5e-16   59.0   2.7    1.8e-15   57.0   0.2    2.9  3  HAMP          HAMP domain
    7.7e-12   45.1   3.1    8.2e-12   45.0   0.3    2.6  4  HisKA         His Kinase A (phospho-acceptor) domain
  ------ inclusion threshold ------
      0.011   15.7   0.0       0.02   14.8   0.0    1.3  1  HATPase_c_5   GHKL domain
       0.11   12.5   0.1       0.27   11.3   0.1    1.6  1  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
       0.12   12.2   0.1       0.27   11.1   0.1    1.5  1  betaPIX_CC    betaPIX coiled coil


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   3.4e-22     1e-18       1     111 [.     374     485 ..     374     486 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 3.4e-22
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                 gd +rL+q+++nl++N+++++ ++g+++++ ++s   lvi   D+ +G++ e+l +l e+f++ ++s++r +gg+GlGl+i+ ++v  +gG+++ + +p
  CTQ29017.1 374 GDRDRLMQLFNNLLENSLRYTDSGGSLHITARRSGRMLVIDFADSAPGVSDEQLARLCERFYRaEGSRNRASGGSGLGLAICLNIVAAHGGTLRADHSP 472
                 799*****************779*********7779***************************9999*****************9999*********** PP

                 TTEEEEEEEEESS CS
   HATPase_c  99 grGttftftlple 111
                  +G ++ ++lple
  CTQ29017.1 473 FGGVSIKVELPLE 485
                 9*********997 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.8   8.3e+03       6      15 ..     169     178 ..     165     180 .. 0.81
   2 !   57.0   0.2     6e-19   1.8e-15       2      52 ..     210     260 ..     210     261 .. 0.97
   3 ?    0.6   0.1      0.26   7.8e+02       6      42 ..     277     315 ..     273     322 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.8
                 THHHHHHHHH CS
        HAMP   6 ilrPLrrLar 15 
                 i  P++rL+r
  CTQ29017.1 169 IASPVERLTR 178
                 789****997 PP

  == domain 2  score: 57.0 bits;  conditional E-value: 6e-19
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrLr 52 
                 lar +l+P++rL++ + ++aaGd++tr++v+g+DE+G+La+ fN+++  L+
  CTQ29017.1 210 LARGLLAPVKRLVEGTHKLAAGDFSTRVTVTGGDELGRLAQDFNQLASTLE 260
                 79*********************************************9997 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.26
                 THHHHHHHHHHHHHHTTT..BTSSTCCTTSSSHHHHHHH CS
        HAMP   6 ilrPLrrLaraarriaaG..dldtrlpvsgrDEiGeLar 42 
                 +  PL  L+   ++i++G  ++++   +s + E+++L +
  CTQ29017.1 277 LRTPLAVLRGELEAIQDGvrRFTPESIPSLQAEVATLTK 315
                 66899999999******9998888766677777777765 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.5   7.6e+03      18      41 ..      34      54 ..      33      64 .. 0.49
   2 ?   -3.3   0.0       3.2   9.5e+03      43      63 ..     237     257 ..     227     258 .. 0.80
   3 !   45.0   0.3   2.8e-15   8.2e-12       1      67 []     265     329 ..     265     329 .. 0.94
   4 ?   -2.0   0.1       1.3   3.8e+03      49      60 ..     377     388 ..     368     392 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.5
                HHHHHHHHHHHC..T-HSSCHHHH CS
       HisKA 18 sailgnaeaLkregklteelkeyl 41
                s+ +g+++ +kr    +e+   +l
  CTQ29017.1 34 SFERGFIDYIKRG---NEQRLTML 54
                5556777777773...22222233 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.2
                 HHHHHHHHHHHHHHHHHHHCC CS
       HisKA  43 tiesearrldhlvedlLdlsr 63 
                 + + +++ l +l +d+ +l++
  CTQ29017.1 237 VTVTGGDELGRLAQDFNQLAS 257
                 556788889999999988875 PP

  == domain 3  score: 45.0 bits;  conditional E-value: 2.8e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 ++++++a+++HELrtPL++++g +ea+++    +    e + +++ e+  l++lv+dl +ls  ++g
  CTQ29017.1 265 MRRDLMADISHELRTPLAVLRGELEAIQDG--VRRFTPESIPSLQAEVATLTKLVDDLHQLSMSDEG 329
                 689**************************5..7799999**********************999876 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHH CS
       HisKA  49 rrldhlvedlLd 60 
                 +rl +l ++lL+
  CTQ29017.1 377 DRLMQLFNNLLE 388
                 688888888876 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   6.6e-06      0.02       6      88 ..     379     469 ..     375     473 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.6e-06
  HATPase_c_5   6 lcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg....ek.......kkle...sskskkeehGiGlksireivkkykgnlsie 88 
                  l+ ++ nlL+N++   +       ++++t+r++ ++l+i +  s  g    +           +   s+++ ++  G+Gl    +iv  ++g+l+ +
   CTQ29017.1 379 LMQLFNNLLENSLRYTDS----GGSLHITARRSGRMLVIDFADSAPGvsdeQLarlcerfY--RaegSRNRASGGSGLGLAICLNIVAAHGGTLRAD 469
                  788999999998876555....568*******************88866651144453231..24457889999******************99876 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1     9e-05      0.27      34     101 ..     246     317 ..     242     336 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9e-05
  Baculo_PEP_C  34 aqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlr....neLtnlnsiltnLlssv 101
                   + la+++++++++L+  ++  ++l+a+++++l t l+ L   l a+qd +r    + + +l++++++L+  v
    CTQ29017.1 246 GRLAQDFNQLASTLERNQQMRRDLMADISHELRTPLAVLRGELEAIQDGVRrftpESIPSLQAEVATLTKLV 317
                   7899999999999*9999999999***********************8887333357888999999888655 PP

>> betaPIX_CC  betaPIX coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   9.1e-05      0.27      42      70 ..     243     271 ..     242     279 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.1e-05
  betaPIX_CC  42 devqelkqenkklkksleeEqkaRkdLEk 70 
                 de+  l q++ +l  +le+ q+ R+dL  
  CTQ29017.1 243 DELGRLAQDFNQLASTLERNQQMRRDLMA 271
                 8999**********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3754.11
//
Query:       CTQ29018.1  [L=240]
Description: DNA-binding response regulator in two-component regulatory system with BaeS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-24   86.8   0.0    1.6e-24   86.2   0.0    1.3  1  Response_reg  Response regulator receiver domain
    8.9e-24   83.4   0.1    1.6e-23   82.5   0.1    1.4  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
  ------ inclusion threshold ------
      0.047   14.2   0.1      0.079   13.5   0.1    1.3  1  Elongin_A     RNA polymerase II transcription factor SIII (El
       0.13   12.3   0.2       0.41   10.6   0.2    2.0  1  HTH_11        HTH domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.0   3.6e-28   1.6e-24       1     111 [.      13     121 ..      13     122 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 3.6e-28
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +liv+D+p++ +ll ++l+ +gy   a  ++g+++l ++++  ++lillD+++pg dGl+l++eir+ + ++pv+++ta+ ee d+  +l++gadd+
    CTQ29018.1  13 ILIVEDEPKLGQLLIDYLQAAGY-APALINHGDKVLPYVRQTPPHLILLDLMLPGTDGLTLCREIRRFS-DVPVVMVTAKIEEIDRLLGLEIGADDY 107
                   8**********************.*******************************************88.*************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   + Kp++p+e+++++
    CTQ29018.1 108 ICKPYSPREVVARV 121
                   **********9998 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.1   3.6e-27   1.6e-23       4      76 ..     159     231 ..     156     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 3.6e-27
                  EE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEE CS
  Trans_reg_C   4 veltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYr 76 
                  ++ltp ef+lL++L ++pg+v+sre+Ll++++++   v+drt+d+hi++LR+kLe+  +++++I+ v+gvGYr
   CTQ29018.1 159 LDLTPAEFRLLKTLSQEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYR 231
                  79*******************************************************9999***********9 PP

>> Elongin_A  RNA polymerase II transcription factor SIII (Elongin) subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.8e-05     0.079      12     100 ..     121     219 ..     117     221 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
   Elongin_A  12 lrpiLekctpe.qLreiEensphla..eetdelWkklikrdfpeeskekstepkep.......kswrelYeklkkereeklkeaaerLreaykklkkek 100
                 ++ iL++c+p+  L+ +  +sp ++  ++ +  W+  +    p e +  +t  +ep       +    lY++++  +++  ++  ++Lr+++++l++e+
  CTQ29018.1 121 VKTILRRCKPQrDLQALDAQSPLIVdeGRFQASWRDKLLDLTPAEFRLLKTLSQEPgkvfsreQLLNHLYDDYRVVTDRTIDSHIKNLRRKLEALDAEQ 219
                 799****777537************555599*****9988888888755555466667777777899***************************99987 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   9.1e-05      0.41      27      51 ..     196     220 ..     165     231 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.1e-05
      HTH_11  27 vSrrtvrrdIkaLeelgvpIesepg 51 
                 v+ rt+  +Ik L+ ++  +++e++
  CTQ29018.1 196 VTDRTIDSHIKNLRRKLEALDAEQS 220
                 7****************77776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2077.19
//
Query:       CTQ29019.1  [L=453]
Description: putative peptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-97  323.7   0.0    6.4e-97  323.3   0.0    1.2  1  Peptidase_U32    Peptidase family U32
    1.2e-20   73.5   0.0    3.3e-20   72.1   0.0    1.8  2  Peptidase_U32_C  Peptidase family U32 C-terminal domain
  ------ inclusion threshold ------
      0.025   14.6   0.0        2.8    8.0   0.0    3.1  3  Nup35_RRM_2      Nup53/35/40-type RNA recognition motif
       0.35   10.9   4.1       0.14   12.1   0.6    2.0  2  Tachystatin_B    Antimicrobial chitin binding protein tachyst


Domain annotation for each model (and alignments):
>> Peptidase_U32  Peptidase family U32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.3   0.0  1.4e-100   6.4e-97       1     231 [.      75     343 ..      75     345 .. 0.98

  Alignments for each domain:
  == domain 1  score: 323.3 bits;  conditional E-value: 1.4e-100
  Peptidase_U32   1 leklrkyleklaelgvdavivqDpgvlelareeapelelhlStqanitnseavrflkelGasrvvlaRElsleeikaikekvpdvelEvfvhGalc 96 
                    l+++ + l+++ e+g+da+i++Dpg+++l+re++pe+++hlS+qan++n+++v+f++++G +rv+l+RElsl+ei++i+++vp++e+E+fvhGalc
     CTQ29019.1  75 LKTFIRDLKPVVEMGPDALIMSDPGLIMLVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLDEIEEIRRQVPEMEIEIFVHGALC 170
                    57888999**************************************************************************************** PP

  Peptidase_U32  97 vaysGrcllssylsgrsanrgecaqpcrldyr.......................................lieekekgeeepieedekgtyllsp 153
                    +aysGrclls y+++r++n+g c+++cr++y+                                       ++e k++ge++  +ede+gty++++
     CTQ29019.1 171 MAYSGRCLLSGYINKRDPNQGTCTNACRWEYNvaegkeddvgnivhkyepipvqtveptlgigaptdkvfmIEEAKRPGEYMTAFEDEHGTYIMNS 266
                    **********************************************************************888888******************** PP

  Peptidase_U32 154 kdlclieelpelleaGvdslKIeGRmkspeyvatvvrvYreaidallagreevkeelkeeleklanrgltsgfllgrk 231
                    kdl++i ++++l ++Gv+slKIeGR+ks +y+a++++vYr+aid+++ag+ +++ +l e le la+rg+t+gfl +++
     CTQ29019.1 267 KDLRAIAHVERLTQMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGK-PFDTSLLETLEGLAHRGYTEGFLRRHT 343
                    **************************************************.***********************9987 PP

>> Peptidase_U32_C  Peptidase family U32 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.4   1.5e+04      17      31 ..      33      47 ..      26      50 .. 0.69
   2 !   72.1   0.0   7.5e-24   3.3e-20       2      82 .]     359     440 ..     358     440 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.4
  Peptidase_U32_C 17 laeveqRNkfsvGde 31
                     ++ + +RN+ +  + 
       CTQ29019.1 33 RYSLRVRNNEFNHEN 47
                     788999998666555 PP

  == domain 2  score: 72.1 bits;  conditional E-value: 7.5e-24
  Peptidase_U32_C   2 eydfvGevlsydeeglaeveqRNkfsvGdelEvltPkgenveftveelydedgeeievaphpgqkvkikl.p.velepgdilR 82 
                      +++fvGe+++++++ la v ++NkfsvGd+lE++tP+g nv+ft+e++++ +ge + vap+ g +v++++ +  +l+ + ++R
       CTQ29019.1 359 RQQFVGEFTGERNGPLAAVAVKNKFSVGDSLELMTPQG-NVNFTLEHMENGKGETMPVAPGDGYTVWLPVpDdLPLQYALLMR 440
                      79*******777656***********************.******************************96358888888888 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00063       2.8      10      43 ..      97     129 ..      97     133 .. 0.81
   2 ?    2.4   0.0     0.035   1.6e+02      22      34 ..     209     221 ..     208     243 .. 0.82
   3 ?   -2.1   0.0       0.9     4e+03      13      28 ..     397     413 ..     394     414 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00063
  Nup35_RRM_2  10 dtelielVlehFasfGeIvkhyvpkevsvmyvkf 43 
                  d++li+lV+ehF +  +I+     ++v++++vkf
   CTQ29019.1  97 DPGLIMLVREHFPEM-PIHLSVQANAVNWATVKF 129
                  689*********997.777666668888888888 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.035
  Nup35_RRM_2  22 asfGeIvkhyvpk 34 
                  +++G+Iv++y p+
   CTQ29019.1 209 DDVGNIVHKYEPI 221
                  579*******994 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.9
  Nup35_RRM_2  13 lielVlehFas.fGeIv 28 
                    +  leh+++  Ge++
   CTQ29019.1 397 NVNFTLEHMENgKGETM 413
                  5677899***9899986 PP

>> Tachystatin_B  Antimicrobial chitin binding protein tachystatin B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   3.1e-05      0.14       6      29 ..     165     188 ..     161     198 .. 0.81
   2 ?   -1.4   0.2      0.53   2.4e+03      16      27 ..     290     300 ..     288     302 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.1e-05
  Tachystatin_B   6 frGarCrvysGrsCCfGyyCrrdf 29 
                      Ga C  ysGr    Gy  +rd 
     CTQ29019.1 165 VHGALCMAYSGRCLLSGYINKRDP 188
                    68********************94 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.53
  Tachystatin_B  16 GrsCCfGyyCrr 27 
                    Gr+  f yyC r
     CTQ29019.1 290 GRTKSF-YYCAR 300
                    566666.99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3566.99
//
Query:       CTQ29020.1  [L=298]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-27   95.3   0.4      3e-27   94.7   0.4    1.2  1  DAGK_cat    Diacylglycerol kinase catalytic domain
  ------ inclusion threshold ------
       0.06   12.5   0.1      0.076   12.2   0.1    1.2  1  NAD_kinase  ATP-NAD kinase


Domain annotation for each model (and alignments):
>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.4   3.3e-31     3e-27       3     126 .]       9     128 ..       7     128 .. 0.96

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 3.3e-31
                 EEEE-TTCTTTTHHHHHHHCHHHHHHCTCEEEEEE--STTHHHHHHHHHHHCC-SEEEEEESHHHHHHHHHHHCTHHCTTSEEEEEE-SS--HHHHHCT CS
    DAGK_cat   3 lvivNpksGkgkgekllrkvrelleeagvelelieteepgdakelakeakeegvdlivvaGGDGtvsevlnglleelatkpplgiiPlGtgNdlaralg 101
                 l+i+N   Gkg+ e  lr++ +ll+++g++++++ t+e+gda +++ ea + +v+++++ GGDGt++ev+ +l+e ++ k++lgi+PlGt+Nd+a ++g
  CTQ29020.1   9 LLILN---GKGANEPQLREAVNLLRDEGIDIHVRVTWEKGDAARFIDEALQLNVETVIAGGGDGTINEVATALVE-RGGKMALGILPLGTANDFATSVG 103
                 67888...888999999**********************************************************.*********************** PP

                 --SSHHHHHHCHHCTBEEEEEEEEE CS
    DAGK_cat 102 igkdieealesiikgetrkvdvgkv 126
                 i++d+ +al+ +i g+  ++d+++v
  CTQ29020.1 104 IPQDLASALKLAIVGRDVPIDIARV 128
                 *********************9986 PP

>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   8.5e-06     0.076      66     131 ..      46     115 ..      17     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.5e-06
                 EEECCC-TTTTTSSSEEEEEE-HHHHHHHHHHHHH....CT-EEEEEESSS--SS-SEEGGGHHHHHHHH CS
  NAD_kinase  66 dtrkaleafadagvdliivvGGDGTaldvarllqk....aeiPvlgvnaGvkgfltefepeaaaellekl 131
                 d  + +++  +  v+ +i+ GGDGT+ +va++l +     +  +l + +++  + ++  p+++a++l+  
  CTQ29020.1  46 DAARFIDEALQLNVETVIAGGGDGTINEVATALVErggkMALGILPLGTANDFATSVGIPQDLASALKLA 115
                 6777888889999*****************9998744434555555555555555555777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2375.15
//
Query:       CTQ29021.1  [L=220]
Description: HAD hydrolase, family IA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-31  108.7   0.0    4.4e-31  108.3   0.0    1.2  1  HAD_2           Haloacid dehalogenase-like hydrolase
    3.8e-20   73.1   0.0    1.2e-19   71.5   0.0    1.7  1  Hydrolase       haloacid dehalogenase-like hydrolase
    8.9e-07   28.9   0.0    1.5e-06   28.2   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like
    5.8e-06   26.8   0.5    1.3e-05   25.7   0.2    1.7  2  HAD             haloacid dehalogenase-like hydrolase
    1.6e-05   24.9   0.1    0.00069   19.7   0.1    2.6  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase
     0.0016   18.3   0.0      0.004   16.9   0.0    1.8  1  NIF             NLI interacting factor-like phosphatase
  ------ inclusion threshold ------
      0.014   15.2   0.0       0.32   10.7   0.0    2.1  2  Hydrolase_3     haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.0   1.7e-34   4.4e-31       1     177 [.       6     185 ..       6     186 .. 0.91

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 1.7e-34
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkk...kevkpydgvkelLeeLkeagy 96 
                 +iFD+Dg+++d+e l+ qa   +l++ g      e      g  l+++        + +   ++l + + ++  +    + +p+ gv+e+L + +eagy
  CTQ29021.1   6 VIFDMDGVIIDSEALWRQAQIDALAQWGATASVAECETLTKGKRLDDIAGTWCRYFQLDLAPQRLEDAILQRITRliaAKGEPMRGVQEALRYFREAGY 104
                 7*************************99976555555666789999999988888888887777766666666666667899***************** PP

       HAD_2  97 klgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvia 177
                 k++++Ts+sr+++   l++l + ++Fd i +++d  + KP+p+v++++l+kl+l+++++++++Ds+t++ aa+ agi +i+
  CTQ29021.1 105 KIALATSSSRQVIAAVLNKLSLWHFFDAISSADDEPRGKPHPAVYLTTLRKLNLNASQCLVIEDSFTGFCAAQSAGIATIV 185
                 ******************************************************************************997 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   4.5e-23   1.2e-19       1     210 []       3     180 ..       3     180 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 4.5e-23
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHH......HHHHHHCHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpe......wltaldippdlgaaigsa 93 
                 + +v+fD+dG+++++e     ++++a                    +  a a +ga++++a+   + ++ +gk+       w +          + + a
  CTQ29021.1   3 MQAVIFDMDGVIIDSE----ALWRQA--------------------QIDALAQWGATASVAE---CETLTKGKRLddiagtWCRYF--------QLDLA 66 
                 679*************....777777....................3334444444433333...332333333333333388888........88888 PP

                 HHHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  94 qsqgrtvallqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpe 191
                  ++ ++++l+  r+ ++++++ +  ++ ++ ea++++++ag++++l+t+++++   +++n+l   ++fda+ ++d+e  +kp+p  ++ ++r+L+ + +
  CTQ29021.1  67 PQRLEDAILQ--RITRLIAAKGE--PMRGVQEALRYFREAGYKIALATSSSRQVIAAVLNKLSlWHFFDAISSADDEPRGKPHPAVYLTTLRKLNLNAS 161
                 8899999999..***********..**************************************77777******************************* PP

                 GEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxx RF
   Hydrolase 192 evamVGDgvnDaaalaaAg 210
                 ++++++D++++  a++ Ag
  CTQ29021.1 162 QCLVIEDSFTGFCAAQSAG 180
                 **********999999997 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   5.8e-10   1.5e-06       2      52 ..     141     190 ..     140     211 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 5.8e-10
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSS CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGv 52 
                     +gKP+p +y   l++l+++ +++l+i D+  t   +A+ aG+ ++ ++   
      CTQ29021.1 141 RGKPHPAVYLTTLRKLNLNASQCLVIEDS-FTGFCAAQSAGIATIVIAEDS 190
                     69***************************.***************998765 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.2   5.1e-09   1.3e-05       1     127 [.       6     133 ..       6     151 .. 0.63
   2 ?   -2.0   0.0       1.6   4.1e+03      73      95 ..     192     213 ..     162     218 .. 0.54

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 5.1e-09
         HAD   1 alfDfDgTLldgdsle......lllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalel 93 
                 ++fD+Dg ++d++ l+      +l++ ++++ +  + ++l   ++  ++++++ + ++ ++  l+   ++l++++ +++ r++a++ +p     g+ e+
  CTQ29021.1   6 VIFDMDGVIIDSEALWrqaqidALAQ-WGATASVAECETL---TKGKRLDDIAGTWCRYFQLDLAP--QRLEDAILQRITRLIAAKGEPM---RGVQEA 95 
                 79**********88888766655555.5555444433333...33333444555533333333333..4444777777777775555553...366666 PP

         HAD  94 laahraaGdrvvvvSgglrplvepllaelg....adev 127
                 l+  r+aG+++++ +++ r+++ ++l++l     +d++
  CTQ29021.1  96 LRYFREAGYKIALATSSSRQVIAAVLNKLSlwhfFDAI 133
                 66556**********************99966633333 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.6
         HAD  73 lerfvaevirpklldpgalella 95 
                 ++rf+a++ r ++l p++le+l+
  CTQ29021.1 192 HARFQAAAGRYQTL-PELLEALS 213
                 22222222222233.56666555 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   2.7e-07   0.00069       1      51 [.       6     124 ..       6     133 .. 0.92
   2 ?   -2.3   0.0         2     5e+03      43      60 ..     145     162 ..     141     172 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.7e-07
                  EEEESTTTSE....................................................................ETTEE-TTHHHHHHHHHHTT CS
  Hydrolase_6   1 flfDidGvLw....................................................................rgdkaipgaaealnalraag 30 
                  ++fD+dGv++                                                                     +++++ g++eal+++r+ag
   CTQ29021.1   6 VIFDMDGVIIdsealwrqaqidalaqwgatasvaecetltkgkrlddiagtwcryfqldlapqrledailqritrliaAKGEPMRGVQEALRYFREAG 103
                  68999999999999999999999999999999999999999999999999999999999999999999999999999889****************** PP

                  -EEEEEE---SS-HHHHHHHH CS
  Hydrolase_6  31 kpvvllTNnsskseeeyakkl 51 
                  ++++l T +s++   ++++kl
   CTQ29021.1 104 YKIALATSSSRQVIAAVLNKL 124
                  ********9998877777776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2
                  -HHHHHHHHHHTT----G CS
  Hydrolase_6  43 seeeyakkleklgvdite 60 
                  ++  y++ l+kl++++++
   CTQ29021.1 145 HPAVYLTTLRKLNLNASQ 162
                  667788899999988776 PP

>> NIF  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.6e-06     0.004      37     126 ..      90     182 ..       4     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.6e-06
         NIF  37 pgldefLkelskl.yevvifTasseeyaeavidildpekkllshrlyrescv..kkkg...eyvKdLsllgrdlsrvvivDdspdsfelqpengip 126
                  g++e L++  +  y++ + T+ss++ ++av+++l   +  +++  + ++    k       y++ L++l+ + s+ ++++ds + f + ++ gi 
  CTQ29021.1  90 RGVQEALRYFREAgYKIALATSSSRQVIAAVLNKLSLWHF-FDAISSADDEPrgK--PhpaVYLTTLRKLNLNASQCLVIEDSFTGFCAAQSAGIA 182
                 68999999998878*********************99986.88887777663222..2456**********************9998888777775 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.045   1.2e+02       1      26 [.       6      31 ..       6      35 .. 0.89
   2 ?   10.7   0.0   0.00013      0.32      13      55 ..      85     127 ..      81     134 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.045
                 EEEEIIIIIS-TTS---HHHHHHHHH CS
  Hydrolase_3  1 ialDlDGTLlnsdkkisektkeaikk 26
                 +++D+DG +++s+    +  ++a+++
   CTQ29021.1  6 VIFDMDGVIIDSEALWRQAQIDALAQ 31
                 69**********99999999999887 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00013
                  TS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3  13 dkkisektkeaikklkekgikvviATGRslravlpvleelgld 55 
                  +++     +ea+++++e+g+k+++AT  s + +  vl++l l 
   CTQ29021.1  85 KGEPMRGVQEALRYFREAGYKIALATSSSRQVIAAVLNKLSLW 127
                  556667789*************************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1566.72
//
Query:       CTQ29022.1  [L=425]
Description: D-arabinitol transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-31  107.4  78.7    1.9e-19   69.8  43.5    2.0  2  MFS_1       Major Facilitator Superfamily
     0.0049   15.8   0.6     0.0049   15.8   0.6    3.5  3  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
       0.15   12.0   0.2       0.15   12.0   0.2    4.8  6  DUF5325     Family of unknown function (DUF5325)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8  43.5   3.1e-23   1.9e-19       9     295 ..      25     313 ..      18     313 .. 0.86
   2 !   51.4  27.2   1.2e-17   7.4e-14       5     185 ..     234     418 ..     231     424 .. 0.82

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 3.1e-23
       MFS_1   9 alarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa...sslwlllvlrvlqGlgagalf 103
                 +++ + + +a+ +++ ++lg+sp+e+++++tly+l+aa+++ + G++++ + + +++++g++l++++ +l+l+f+   +++ l+l++  + G+++ +++
  CTQ29022.1  25 FMTGDGFELAFLSHYIKALGFSPAEASFAFTLYGLAAALSAWISGVVAEIITPLKTMMIGFVLWCVFhVLFLVFGlghANYALILLFYGIRGFAYPLFL 123
                 333333444444466699*************************************************8888889667677779**************** PP

       MFS_1 104 pagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllll.peepperkrkspkeeekgtgpaplvpaw 200
                  + +++i++ ++ ++ ++aig++ a +s+G+ ++g  + ++ + ++g  ++ +++ +++l ++v++l+ l     p++  + +++e    + ++l  a 
  CTQ29022.1 124 YSFIVAIVHNVKSDNASSAIGWFWAVYSIGIgVFGSYIPSFTIPHIGEMGTLWLALAFCLTGGVIALVSLrHIQTPQHMQNLTTRE----KFSELGRAA 218
                 ***********************************************999999999999999885444442666666666666666....666666689 PP

       MFS_1 201 kallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalglalla 295
                 ++l +++ +++  ++ +++++ ++g+ + +p+++++ lg+s   + + + a++++ ++++ +l+g l  +lg+ +  +++++++++l++l++++++
  CTQ29022.1 219 TLLYTNRNILLSSMVRIINTLSLFGFAVIMPMMFVDELGFS-TSEWLQVWAVFFFTTIFSNVLWGILGEKLGWmKVVRWFGCIGMALSSLAFYYIP 313
                 9999999998677777777789999*******99*******.788888899999999999*************9999***************9985 PP

  == domain 2  score: 51.4 bits;  conditional E-value: 1.2e-17
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfG....rrrvlllglllfalglllll..fasslwlllvlrvlqGl 97 
                  ++++l+ + +++++p++  ++lg+s se   + ++++++++++++++G l++++G     r++ ++g++l++l+++++   f++s+ + l+  +  G+
  CTQ29022.1 234 RIINTLSLFGFAVIMPMMFVDELGFSTSEWLQVWAVFFFTTIFSNVLWGILGEKLGwmkvVRWFGCIGMALSSLAFYYIPqhFGHSFAMALIPAIALGI 332
                 57888888999999999889****888885558888********************87777777777777777773333347757777*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspk 185
                 + +a++p+ aa++ ++ pk ++g ai++++++++++  l+p+++ +l+  ++  +v ++ ++++++af l ++  +e p  +++++++
  CTQ29022.1 333 FVAAFVPL-AAVFPALEPK-HKGAAISVYNLSAGMSNFLAPAIAVVLLPFFSTIGVVIAYTALYVVAFFLCAFIRVEQPGFSHKEATA 418
                 *8666665.5889998888.***********************************************887566666666555555555 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   9.7     0.025   1.5e+02      21      85 ..      35      97 ..      24     253 .. 0.79
   2 !   15.8   0.6   8.1e-07    0.0049      25      87 ..     252     314 ..     244     343 .. 0.91
   3 ?   -2.4   2.4      0.27   1.6e+03     280     310 ..     374     404 ..     318     412 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.025
  MFS_1_like 21 YltiylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfi 85
                +l+ y+k  g++++e  +  ++  l + ls+ i gv+a+ +   k+++ ++ +l++v+++ l+++
  CTQ29022.1 35 FLSHYIKALGFSPAEASFAFTLYGLAAALSAWISGVVAEIITPLKTMM-IGFVLWCVFHV-LFLV 97
                788888888888888888888888888888888888888887777654.56677777776.3332 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 8.1e-07
  MFS_1_like  25 ylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfipp 87 
                 + ++ g++ se   + ++  +t+i+s  +wg l +++g  k v  ++++  a++ l+++ ip+
  CTQ29022.1 252 FVDELGFSTSEWLQVWAVFFFTTIFSNVLWGILGEKLGWMKVVRWFGCIGMALSSLAFYYIPQ 314
                 667899*****************************************************9994 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.27
  MFS_1_like 280 aeklleklGhvklliiallayilrfllyaii 310
                 a  ll +++ + ++i+   +y++ f+l a+i
  CTQ29022.1 374 AVVLLPFFSTIGVVIAYTALYVVAFFLCAFI 404
                 4455666666666666666666666666665 PP

>> DUF5325  Family of unknown function (DUF5325)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.1   6.7e+03      38      50 ..      20      32 ..      15      34 .. 0.65
   2 ?   -2.4   4.3      0.75   4.5e+03       9      50 ..      55      86 ..      48     105 .. 0.55
   3 ?   -2.3   0.6      0.71   4.3e+03      26      41 ..     169     184 ..     142     190 .. 0.59
   4 ?   -2.3   0.2      0.73   4.4e+03      35      51 ..     244     260 ..     232     262 .. 0.61
   5 ?   -2.7   0.8      0.92   5.5e+03      17      28 ..     325     336 ..     319     344 .. 0.63
   6 ?   12.0   0.2   2.5e-05      0.15      12      53 ..     372     415 ..     364     423 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.1
     DUF5325 38 ivalivvmGlGFk 50
                ++++++  G GF+
  CTQ29022.1 20 VAIAVFMTGDGFE 32
                4555666677776 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.75
     DUF5325  9 llyAilAvaslmgiGiaigersilgiiiaivalivvmGlGFk 50
                 ly ++A++s              g+++ i+    +m +GF 
  CTQ29022.1 55 TLYGLAAALSAWI----------SGVVAEIITPLKTMMIGFV 86
                3444444444333..........3455555555555555553 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.71
     DUF5325  26 igersilgiiiaival 41 
                 ige  +l++++a+ + 
  CTQ29022.1 169 IGEMGTLWLALAFCLT 184
                 5666666666666555 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.73
     DUF5325  35 iiaivalivvmGlGFkt 51 
                 +++i+ +++v  lGF+t
  CTQ29022.1 244 FAVIMPMMFVDELGFST 260
                 34555666666666665 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 0.92
     DUF5325  17 aslmgiGiaige 28 
                 +  +++Gi++++
  CTQ29022.1 325 IPAIALGIFVAA 336
                 444667777765 PP

  == domain 6  score: 12.0 bits;  conditional E-value: 2.5e-05
     DUF5325  12 AilAva..slmgiGiaigersilgiiiaivalivvmGlGFktKk 53 
                 Ai+ v+  ++  iG+ i+ + + ++++++ a+i v   GF+ K 
  CTQ29022.1 372 AIAVVLlpFFSTIGVVIAYTALYVVAFFLCAFIRVEQPGFSHKE 415
                 55444433799******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       999  (0.0557198); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 3182.86
//
Query:       CTQ29023.1  [L=487]
Description: xylulokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-75  253.2   0.0    3.4e-75  252.8   0.0    1.2  1  FGGY_N       FGGY family of carbohydrate kinases, N-terminal 
    9.8e-38  129.9   0.7    1.7e-37  129.1   0.7    1.4  1  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
    0.00075   19.1   0.1      0.066   12.7   0.0    2.7  3  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.8   0.0   5.7e-79   3.4e-75       1     245 []       1     243 [.       1     243 [. 0.97

  Alignments for each domain:
  == domain 1  score: 252.8 bits;  conditional E-value: 5.7e-79
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE-TT CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynailwk 99 
                 ++lg+D+Gt+ +ka+v+de+ +v+as++a+l +++p++ w+eq pe +w+a+   ++ + e+       ikaIg sgq++g+vllD ++k +++ailw+
  CTQ29023.1   1 MYLGIDLGTSEVKALVIDENHEVIASHSAPLSIQRPHPHWSEQAPELWWEATEYLMATLREKCAQHWPAIKAIGLSGQMHGAVLLDAEGKAIRPAILWN 99 
                 89************************************************9876666666666555899****************************** PP

                 --TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-HHHHHHTT- CS
      FGGY_N 100 drrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnikklewdeellailgi 198
                 d+r+a+++ +l++   + +l +  g+++++gft+ kl W++++ep+ f++++++ll++dyL++r+tg++v+d+++a+++ +++++k++w++ ll+ +g+
  CTQ29023.1 100 DTRCAAECAELEA--MAPELHQVAGNLAMPGFTAPKLLWVRRHEPQHFQRTATVLLPKDYLRYRMTGKKVSDMSDAAGTLWLDVAKRDWSDALLDKCGL 196
                 ***********99..8999******************************************************************************** PP

                 -GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 199 peelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 +++++P lve+ e+ ++l p++aa +Gl++ v+v+ggggD++++a+G
  CTQ29023.1 197 SRSQMPTLVEGCEVSATLDPQVAARWGLNASVVVAGGGGDNAVSAIG 243
                 *********************************************98 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.7   2.9e-41   1.7e-37       1     198 []     252     440 ..     252     440 .. 0.93

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 2.9e-41
      FGGY_C   1 akvslGTssflllvgtkpv....isehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpaf 95 
                 a +slGTs +l++v++ +      ++h++++ ++     + ++ +  +  a s ++w+++  g+        ev  +lae a+++ + +a+ ++f+p++
  CTQ29023.1 252 AFISLGTSGVLFVVTDAYRpapqSAVHAFCHVLP-----NLWHQMSVMLSAASCLQWFCRLTGT-------TEV-ALLAEIAELSEEDKANAPFFLPYL 337
                 579**********997777434466666666666.....9*******************99655.......778.99********************** PP

      FGGY_C  96 sglrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpkt.aeatalGaAil 193
                 sg+r+p++dpdarg++ g+++ +  a++ +A+le+v +++ ++l+al+++ g p+++  ++GGg+++++++qllAdil +pV+++k  + ++alGaA l
  CTQ29023.1 338 SGERTPHNDPDARGIFWGMTHASLRAQLGYAVLEGVSFGINDGLQALKES-GTPIAQCSLVGGGARSPFWAQLLADILAMPVVTHKGgETGGALGAARL 435
                 ***********************************************888.************************************88899******* PP

      FGGY_C 194 Aavaa 198
                 A++aa
  CTQ29023.1 436 ACLAA 440
                 **985 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.1e-05     0.066       1      25 [.       3      27 ..       3     101 .. 0.79
   2 ?   -0.9   0.0      0.16   9.6e+02     133     193 ..     102     169 ..      90     176 .. 0.72
   3 ?    2.7   0.1     0.012        72     194     267 .]     369     436 ..     358     436 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.1e-05
                 EEEEE-SSEEEEEEEETTTEEEEEE CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlgrg 25
                 +GiD+G++ +ka ++de+ ev++  
   CTQ29023.1  3 LGIDLGTSEVKALVIDENHEVIASH 27
                 8*******************99865 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.16
                  S--TTSHHHHHHHHHHHT--TTTHHHHHTT--...........S-------SHHHHHHHHHHHHHTT--HHH CS
  BcrAD_BadFG 133 rcaageGrylgiiadelnmglreldglaekat...........kkarinstcavfaeaelrdalsggekaed 193
                  rcaa+++  l+ +a el ++   l   a+ +            +++++++t +v+ +++    +  g+k  d
   CTQ29023.1 102 RCAAECAE-LEAMAPELHQVAGNL---AMPGFtapkllwvrrhEPQHFQRTATVLLPKDYLRYRMTGKKVSD 169
                  56665554.666777777665444...444445559999999999999999999999998877777777655 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.012
                  HHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH.....HHHH-S-EE--GGGGGHHHHHHHHHH CS
  BcrAD_BadFG 194 IlaglhraialrvialisrsggvtdevtltGGvakneaavkelrklvkenygevkininpdsiytgalGAalfA 267
                  +l+g+   i + + al ++   +  +  l+GG a++ ++  +    +  +++ +++ +++  +  galGAa +A
   CTQ29023.1 369 VLEGVSFGINDGLQALKESGTPIA-QCSLVGGGARS-PFWAQ----LLADILAMPVVTHKGGETGGALGAARLA 436
                  677788888888888877777775.69999999999.33333....469999*******************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3993.41
//
Query:       CTQ29024.1  [L=455]
Description: D-arabinitol 4-dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-89  299.8   0.0    1.9e-89  299.4   0.0    1.2  1  Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
    2.3e-44  151.2   0.0    3.8e-44  150.5   0.0    1.3  1  Mannitol_dh    Mannitol dehydrogenase Rossmann domain
  ------ inclusion threshold ------
      0.095   12.7   0.0       0.22   11.5   0.0    1.6  1  DUF523         Protein of unknown function (DUF523)


Domain annotation for each model (and alignments):
>> Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.4   0.0   3.1e-93   1.9e-89       2     246 .]     196     439 ..     195     439 .. 0.99

  Alignments for each domain:
  == domain 1  score: 299.4 bits;  conditional E-value: 3.1e-93
  Mannitol_dh_C   2 svgfpntmVDRIvpaatddelakleeelgveDplavtvEpFiqWviednfvkgrpelelvgvelvedvepyeerKlriLNggHaalaylgalaGyq 97 
                    ++++pntmVDRI+p+ ++d  a++++++g++D+++v+ E+FiqWv+e+nf++ rp+le+vgve+ve+v pyee+K+riLN++H+++a++g+l+G+q
     CTQ29024.1 196 NTTCPNTMVDRITPRPAADLPARIKAQTGIDDKAPVMGETFIQWVVENNFRDVRPNLEAVGVEMVESVIPYEEAKIRILNSSHSCIAWAGTLIGQQ 291
                    78********************************************************************************************** PP

  Mannitol_dh_C  98 tiheamkdeeiraivkkllteevapllkkvdeqdleeYadkiieRFsNpyikdtvervaldGsqklpkrilpslrrlikagtlpellalgvalwir 193
                    +ihe++ ++ i+ai+++++te+v+p+l + ++ dl++Y+d++++RF+Npyi+dt++rva+dG++k+p++i p+l++++++g++pe++a+++al++ 
     CTQ29024.1 292 YIHESTLTDVIYAIADRYVTEDVIPCLGD-NGIDLPTYRDVVLKRFTNPYIQDTNQRVAADGFSKIPAMIAPTLQECYQRGVRPEATAMLPALFFV 386
                    *****************************.****************************************************************** PP

  Mannitol_dh_C 194 ylegvaeggnyiekeDpqleelqeaallakervkavlaekeileedlaqnkel 246
                    ++e++++g+ +++++D  l++ + +++++++++ av+a++++l  dla+n+++
     CTQ29024.1 387 FMEQWHKGTLPYQYQDGILDAHAVHEMFEAQDPVAVYARDKALFGDLANNADF 439
                    **************************************************986 PP

>> Mannitol_dh  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.0   6.3e-48   3.8e-44       2     151 .]       6     166 ..       5     166 .. 0.98

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 6.3e-48
                  EEEEES-SHHHHHTHH.HHHHHHTT--TT-EEEEEE-STTHH..HHHHHTTTT-EEEEE-.SSS---EEEE--EEEEEEGGG-HHHHHHHHTSTT--E CS
  Mannitol_dh   2 rivhfGaGnfhRahqa.yiddLlaeegldwgivevnlrevda..reaLkaqdelyvviek.geeskearlvgsvnavlsveedlealieamaePeiri 95 
                  +++h+G+G+fhRahqa y+++L+a+ +++w+i++ n r++++  ++aL+aq ++yv+ +  +e+++e+++++s++++l+++++l+ li++ a+P++++
   CTQ29024.1   6 TWLHIGLGSFHRAHQAwYLHRLIASGDNRWRIAAGNIRNDAEqvVQALAAQGGRYVLETVsPEGEREYEEITSIQKLLPWQAGLQPLINEGANPQTKV 103
                  79*************************************9999**************9997899********************************** PP

                  EEE---TTT..BETTTEB-TTSHHHHHHHH-TT.....HHHHHHHHHHHTT----EEEE-SS- CS
  Mannitol_dh  96 vsltvtekG..idatgeletdlpaiaadlakpe.....llvealkrrraaglkpltiisCdnv 151
                  +++tvte+G  ++++++let++p+++adl+ ++     +l+++l++r+a+++ plt+++Cdnv
   CTQ29024.1 104 IAFTVTEGGyyLNTRHQLETSNPDLQADLQGECktiygTLARILEKRMADNAGPLTLLNCDNV 166
                  **********999*************************************************7 PP

>> DUF523  Protein of unknown function (DUF523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.7e-05      0.22       9      57 ..     163     232 ..     160     282 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.7e-05
      DUF523   9 gekvrydgkakksevlee...elkelvke..elvpvCPEvaggLptPRepael................a 57 
                  ++vr++g+  ++ ++e    + k+ v +   + + CP +++   tPR++a+l                 
  CTQ29024.1 163 CDNVRHNGERFHDGMVEFlqlTGKQAVIDwmAANTTCPNTMVDRITPRPAADLparikaqtgiddkapvM 232
                 578999999998766543111222323224466889*****************65444444444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3380.87
//
Query:       CTQ29025.1  [L=313]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-74  250.0   0.0    2.4e-74  249.7   0.0    1.1  1  Sugar-bind    Putative sugar-binding domain
    9.2e-06   25.3   0.3    2.6e-05   23.9   0.1    1.9  2  HTH_23        Homeodomain-like domain
    0.00014   21.9   0.1     0.0004   20.5   0.1    1.8  1  HTH_28        Helix-turn-helix domain
    0.00019   21.4   0.0    0.00042   20.2   0.0    1.5  1  HTH_Crp_2     Crp-like helix-turn-helix domain
    0.00059   19.8   0.0     0.0012   18.8   0.0    1.5  1  HTH_29        Winged helix-turn helix
     0.0034   16.9   0.1     0.0081   15.7   0.1    1.7  1  HTH_24        Winged helix-turn-helix DNA-binding
     0.0052   16.6   0.0      0.012   15.5   0.0    1.5  1  MarR_2        MarR family
  ------ inclusion threshold ------
      0.021   14.5   0.0       0.04   13.6   0.0    1.4  1  Sigma70_r4_2  Sigma-70, region 4
      0.043   13.3   0.0      0.098   12.2   0.0    1.6  1  Sigma70_r4    Sigma-70, region 4
       0.07   12.8   0.0       0.16   11.6   0.0    1.6  1  GntR          Bacterial regulatory proteins, gntR family
      0.073   12.8   0.0       0.21   11.4   0.0    1.8  1  HTH_38        Helix-turn-helix domain
       0.14   12.0   0.0        0.3   10.9   0.0    1.5  1  HTH_IclR      IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Sugar-bind  Putative sugar-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.7   0.0   1.6e-77   2.4e-74       1     254 [.      59     311 ..      59     312 .. 0.98

  Alignments for each domain:
  == domain 1  score: 249.7 bits;  conditional E-value: 1.6e-77
                 CCCCCHHHHHHHHHHHHT-SEEEEESSTSTTCHHHHHHHHHHHHHHHHH--TTE..EEEE-SSHHHHHHHHHTHHCCHTCEEEEESBSECSSCHC.GSH CS
  Sugar-bind   1 selaelleleerLkekfglkeaivvpddadeedvlealgraaaqllesllkdgd..vvgvgwGrtlsavaealtpkslrdvkvvqliGglsekvs.aev 96 
                 +++a++l++++ L+ek+gl e++vvp+ ++ e++l++++ ++ ql+ ++l+d++  ++g+g+G tl++++++++ +sl+ +++v+li++++++++ +++
  CTQ29025.1  59 HPVANCLDYAQLLQEKYGLIECNVVPAFSE-ESTLDSVSFGCYQLMARYLQDDKekIIGLGSGLTLKKALQRIDFDSLN-TRCVALISAMNADGQcNYY 155
                 5899*************************7.88******************98888*******************8777.9****************** PP

                 HHHHHHHHHHCTSEEE--SSBSB-SSHHHHHHHHTSHHHHHHHHHHHT-SEEEEE-EEHCCCCHHHCCTTS-HHHHHHHHHTTEEEEETTEEEETTS-B CS
  Sugar-bind  97 nevvarlAqklggeyellpaPavlssaelreallaersikevlelakkadvalvGiGsaseeaklvkrgflteeelaelreegaVGeilgrffDaeGev 195
                 ++v   l++k++++y+ +paP +++sa++ e+++++r +++v  +a++adv++vGiG + ++++++k+gf+++++++el+++g++Geilgrf+Da+G+v
  CTQ29025.1 156 DDVPLLLTRKIKAKYYQWPAPRYAQSADEYEMWCTNRLFRSVSGVAREADVIFVGIGPLGTQSPIFKDGFINQAQMDELTARGGIGEILGRFIDAQGDV 254
                 *************************************************************************************************** PP

                 CCHCHCCCBSB--HHHHTTSSEEEEE--SGGGHHHHHHHHHTTS-SEEEEEHHHHHHHH CS
  Sugar-bind 196 vetelnerviglsledlrkipkviavAggesKaeAilaaLrgglinvLitdestAkalL 254
                 v++e+n++++++++++   ++ +ia A+ge+K  AilaaL+gg+in+L+tde+tA++lL
  CTQ29025.1 255 VDSEINRMITSYDIRQS--HCPRIAAACGEHKRPAILAALKGGWINGLVTDEHTARWLL 311
                 ***************98..***************************************9 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   1.8e-08   2.6e-05       3      46 ..       8      52 ..       6      55 .. 0.91
   2 ?   -2.8   0.0       4.1   6.1e+03      20      28 ..     273     281 ..     262     281 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.8e-08
      HTH_23  3 sereRlrillllae.GlsvreIAreLgvsrrTvyrwlkryreeGl 46
                + +++ r+++++   G++++eIA +Lg sr  v+r + + +eeG+
  CTQ29025.1  8 RLDQKVRAAWMYYIaGQNQSEIASQLGTSRPVVQRLIAAAKEEGI 52
                6778999******88************************999*97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.1
      HTH_23  20 vreIAreLg 28 
                 +++IA+++g
  CTQ29025.1 273 CPRIAAACG 281
                 689999998 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   2.7e-07    0.0004       7      42 ..      18      53 ..      11      57 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.7e-07
      HTH_28  7 kllaaGhsvreaArelgisrrtvyrWikryeegGia 42
                ++++aG +++e+A +lg+sr  v+r+i +  e+Gi 
  CTQ29025.1 18 MYYIAGQNQSEIASQLGTSRPVVQRLIAAAKEEGIV 53
                799*******************************95 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.8e-07   0.00042      23      54 ..      25      56 ..      20      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.8e-07
                HHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2 23 tqeelAsmlGltretvsrilseLkreglisrg 54
                +q e+As lG++r  v r++++ k+eg++s +
  CTQ29025.1 25 NQSEIASQLGTSRPVVQRLIAAAKEEGIVSIN 56
                589**************************954 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   8.3e-07    0.0012      11      43 ..      23      54 ..      12      60 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 8.3e-07
      HTH_29 11 GvstvsqiAkllglsrrtvyrwlkrfeegGlaa 43
                G+ + s+iA +lg sr+ v+r + +  e+G+ +
  CTQ29025.1 23 GQ-NQSEIASQLGTSRPVVQRLIAAAKEEGIVS 54
                66.9**************************965 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   5.4e-06    0.0081      17      47 ..      23      53 ..      22      54 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.4e-06
      HTH_24 17 risqreLAerlglSpstvnrrlkrLeeeGlI 47
                + +q+e+A +lg S++ v r +   +eeG++
  CTQ29025.1 23 GQNQSEIASQLGTSRPVVQRLIAAAKEEGIV 53
                779**************************98 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.9e-06     0.012      23      51 ..      25      53 ..      18      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.9e-06
                EHHHHHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2 23 tvgelarrlglsksavsrilkrLvaaGLv 51
                +++e+a  lg s++ v+r+++ + + G v
  CTQ29025.1 25 NQSEIASQLGTSRPVVQRLIAAAKEEGIV 53
                79************************988 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.7e-05      0.04      21      52 ..      18      49 ..       9      50 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.7e-05
                  HHHTS---HHHHHHHHT--HHHHHHHHHHHHH CS
  Sigma70_r4_2 21 lryleglsykEIAellgisegtVksrlsRArk 52
                  ++y+ g  + EIA++lg+s   V++ ++ A++
    CTQ29025.1 18 MYYIAGQNQSEIASQLGTSRPVVQRLIAAAKE 49
                  99*************************99986 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.6e-05     0.098      15      44 ..      18      47 ..      17      50 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.6e-05
                HHHTTT--HHHHHHHHTS-HHHHHHHHHHH CS
  Sigma70_r4 15 lrfgeglTleEIgerlgiSrerVrqiekrA 44
                +++  g++++EI+ +lg Sr  V ++++ A
  CTQ29025.1 18 MYYIAGQNQSEIASQLGTSRPVVQRLIAAA 47
                799*****************9999988776 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.16      28      56 ..      27      55 ..      25      59 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        GntR 28 reLaaefgVsrttvReALrrLeaeglver 56
                +e+a+++g+sr++v++ +   ++eg+v +
  CTQ29025.1 27 SEIASQLGTSRPVVQRLIAAAKEEGIVSI 55
                79************************987 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014      0.21      17      41 ..      20      44 ..       7      46 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
      HTH_38 17 laeGlslreIArrLgrspsTIsREl 41
                + +G +++eIA +Lg s+  ++R +
  CTQ29025.1 20 YIAGQNQSEIASQLGTSRPVVQRLI 44
                469***************9999976 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0002       0.3      21      48 ..      26      53 ..      20      56 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
                HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR 21 lselArrtglpkStvhRlLqtLvelGyv 48
                 se+A ++g +++ v Rl++   e+G+v
  CTQ29025.1 26 QSEIASQLGTSRPVVQRLIAAAKEEGIV 53
                58****************9988888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.51u 0.19s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2418.94
//
Query:       CTQ29026.1  [L=333]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-16   58.3   0.1    8.8e-16   57.4   0.1    1.5  1  LacI             Bacterial regulatory proteins, lacI family
    2.2e-12   47.1   0.0      3e-12   46.7   0.0    1.2  1  Peripla_BP_4     Periplasmic binding protein domain
      1e-09   38.2   0.0    1.6e-09   37.6   0.0    1.4  1  Peripla_BP_1     Periplasmic binding proteins and sugar bindi
    8.9e-06   25.7   0.1    2.3e-05   24.4   0.1    1.7  1  HTH_3            Helix-turn-helix
    7.6e-05   23.1   0.0     0.0035   17.7   0.0    2.4  2  Peripla_BP_3     Periplasmic binding protein-like domain
  ------ inclusion threshold ------
      0.012   15.4   0.0       0.03   14.1   0.0    1.7  1  IF2_N            Translation initiation factor IF-2, N-termin
      0.027   14.5   0.1      0.059   13.4   0.1    1.6  1  HTH_19           Helix-turn-helix domain
      0.036   14.5   0.1      0.086   13.3   0.1    1.7  1  HTH_26           Cro/C1-type HTH DNA-binding domain
      0.087   13.2   0.1        0.4   11.1   0.0    2.1  2  HTH_31           Helix-turn-helix domain
       0.17   12.0   0.1       0.34   11.0   0.1    1.5  1  EZH2_WD-Binding  WD repeat binding protein EZH2
       0.18   11.6   0.1       0.65    9.8   0.1    2.1  1  HTH_10           HTH DNA binding domain


Domain annotation for each model (and alignments):
>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.1   5.4e-19   8.8e-16       1      46 []       5      53 ..       5      53 .. 0.99

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 5.4e-19
                -HHHHHHHCTS-HHHHHHHCTTS...SSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnk...erVseetrerVeaameelnYiPn 46
                ti+D+A+l+GVS+++VS +Ln++   +r+s++++e+V++++ee++Y++n
  CTQ29026.1  5 TIYDLAELSGVSASAVSAILNGNwkkRRISAKLAEKVTRIAEEQGYAIN 53
                9*********************************************998 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   1.8e-15     3e-12       1     211 [.      67     275 ..      67     296 .. 0.88

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 1.8e-15
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-S.EEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-C CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvd.giivapvdstalapalkkakaaGIpVvafdsddapsger 96 
                   ig++++ ++n +f ++ e +ee+a+e g   +++  ++   + +++++ ++++ +vd +++  +++++ +++    +++aG+p v  d +    g+ 
    CTQ29026.1  67 IGMIIPKYDNRYFGSIAERFEEMARERGLLPIIT-CTRRRPELEIEAVKAMLSWQVDwVVATGATNPDKISAL---CQQAGVPTVNLDLP----GSL 155
                   89***************************99996.999999****************8899999999988865...55599**8888888....999 PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEE...TSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHH.TTT.ECEE CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggkkgkvvil...aGspgdpnaeeriegfrkvlkeypgikivaeva.ganwdaekaqqaleallt.anp.ldgi 187
                   +  v  dn+  ++++   ++ +   + g+++ l    G  +d n+ er+ gf+++ +e  g+ + +e++ +++++     ++l++ +  a++ l+gi
    CTQ29026.1 156 SPSVISDNYGGAKALTHKILANSARRRGELAPLtfiGGRSSDHNTSERLRGFHDAHRE-LGLSVPQENIlAPGYSKGHVEDCLQERFGsAKTlLQGI 251
                   999*************77766666664777766666*******************999.79999998888899***************54469**** PP

                   EESSCCHHHCHHHHHHHTTTTSTE CS
  Peripla_BP_4 188 laandgmaegalealeaaglagkv 211
                   + +++   eg++++l++ gl+g  
    CTQ29026.1 252 FVNSTISLEGVVRWLSQVGLTGSE 275
                   *******************98764 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0     1e-12   1.6e-09       2     158 ..      65     224 ..      64     270 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1e-12
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTTS- CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaes.gipvialedaidapdgvP 96 
                   +++g+++p+ d+ +f ++ +  ++ a+e g   ++  +   ++l+ +a++ ++++++d ++ +++++  d+i a  ++ g+p + l+  +      P
    CTQ29026.1  65 HVIGMIIPKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEiEAVKAMLSWQVDWVVATGATNP-DKISALCQQaGVPTVNLDLPGSLS---P 157
                   89***********************************************************9999999.*****99999**********9999...* PP

                   EEEE-HHHHHHHHHHHHHHH.HHHHT....GEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE CS
  Peripla_BP_1  97 cvipddtqageestqkLiae.ghkrp....iallegpesaltakervqGflaalaeaGlevkdvhva 158
                   +vi d++  ++  t k +a+ + +r+       ++g +s   + er  Gf +a +e Gl v + +++
    CTQ29026.1 158 SVISDNYGGAKALTHKILANsARRRGelapLTFIGGRSSDHNTSERLRGFHDAHRELGLSVPQENIL 224
                   ******998888887766651566668544478888888889*****************88777665 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   1.4e-08   2.3e-05       8      44 ..       2      41 ..       1      44 [. 0.93

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.4e-08
                TTHHHHHHHHHHTSSHHHHHHHHTT...SSCSBHHHHHHH CS
       HTH_3  8 lglsqeeLAeklGvsrstisriEnG...ernPsletlkkl 44
                +++++ +LAe++Gvs s++s+i nG   +r++s + ++k+
  CTQ29026.1  2 KKITIYDLAELSGVSASAVSAILNGnwkKRRISAKLAEKV 41
                689*******************************999997 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.069   1.1e+02       6      65 ..      61     119 ..      56     145 .. 0.69
   2 !   17.7   0.0   2.2e-06    0.0035      13      99 ..     189     272 ..     181     330 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.069
                   HCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH..... CS
  Peripla_BP_3   6 elGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraal.l 65 
                   +++   i++i   ++ ++++   + ++f++ ++e gl + +t ++ +++ + +a++a+l +
    CTQ29026.1  61 SKKSHVIGMII--PKYDNRYFGSIAERFEEMARERGLLPIITCTRRRPELEIEAVKAMLsW 119
                   55566789999..6666689999**************999998877766655566655542 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 2.2e-06
                   EEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH.HHCC-SEEEEESSCCHHHHHHHHHCCTT-- CS
  Peripla_BP_3  13 afiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal.klaalPtAviaasDelAlgvlqalreaglr 99 
                    fig  g + +++  er+rgf +a +elgl +++  + a  ++ ++++++ l  +++  +++l ++++++s     gv+++l + gl+
    CTQ29026.1 189 TFIG--GRSSDHNTSERLRGFHDAHRELGLSVPQENILAPGYS-KGHVEDCL-QERFgSAKTLLQGIFVNSTISLEGVVRWLSQVGLT 272
                   5788..888899999*****************99999999885.66777655.355554444558******************99985 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.9e-05      0.03       1      24 [.       1      24 [.       1      27 [. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.9e-05
       IF2_N  1 mskirVyeLAkeLgvkskevikkL 24
                m+ki++y+LA+  gv++  v + L
  CTQ29026.1  1 MKKITIYDLAELSGVSASAVSAIL 24
                9***************99887776 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.6e-05     0.059      10      54 ..       1      50 [.       1      59 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.6e-05
      HTH_19 10 elgltqeelaerlgisrskisaiEng..kkdvps...aelllkiaealgi 54
                ++++t+ +lae  g+s s  sai ng  kk  +s   ae++ +iae+ g+
  CTQ29026.1  1 MKKITIYDLAELSGVSASAVSAILNGnwKKRRISaklAEKVTRIAEEQGY 50
                79**************************6669997788888999988776 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   5.3e-05     0.086       9      34 ..       2      27 ..       1      44 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.3e-05
      HTH_26  9 rgitkseLargtgisaatlsrlvkgk 34
                ++it+++La+ +g+sa+ +s +++g 
  CTQ29026.1  2 KKITIYDLAELSGVSASAVSAILNGN 27
                799*********************96 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00025       0.4      19      42 ..       8      31 ..       3      46 .. 0.82
   2 ?   -1.5   0.0         2   3.3e+03      10      31 ..     103     124 ..     102     148 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
      HTH_31 19 evAerlgvsestlsrlEqGrrgrp 42
                ++Ae++gvs+s +s + +G +  +
  CTQ29026.1  8 DLAELSGVSASAVSAILNGNWKKR 31
                79*****************99744 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2
      HTH_31  10 ReraGLsqeevAerlgvsestl 31 
                 R+r  L  e+v + l + ++++
  CTQ29026.1 103 RRRPELEIEAVKAMLSWQVDWV 124
                 6666666666666666666664 PP

>> EZH2_WD-Binding  WD repeat binding protein EZH2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00021      0.34      17      27 ..      23      33 ..      21      35 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
  EZH2_WD-Binding 17 iLNeeWkkLRi 27
                     iLN  Wkk+Ri
       CTQ29026.1 23 ILNGNWKKRRI 33
                     9*********9 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1    0.0004      0.65      22      45 ..       2      25 ..       1      39 [. 0.91

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0004
      HTH_10 22 RrvtlkeLAkelGIskstlsehLr 45
                +++t+ +LA+  G+s+s++s +L+
  CTQ29026.1  2 KKITIYDLAELSGVSASAVSAILN 25
                789*****************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2675.66
//
Query:       CTQ29027.1  [L=249]
Description: Ribitol 2-dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-58  196.4   0.0    4.2e-58  196.0   0.0    1.1  1  adh_short        short chain dehydrogenase
    1.3e-41  142.7   0.1    1.5e-41  142.5   0.1    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
      1e-10   41.8   0.2    1.5e-10   41.3   0.2    1.2  1  KR               KR domain
  ------ inclusion threshold ------
      0.015   14.6   0.1      0.024   14.0   0.1    1.2  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.018   14.5   0.3      0.046   13.2   0.3    1.8  1  Epimerase        NAD dependent epimerase/dehydratase family
       0.03   13.5   0.0      0.041   13.0   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.035   13.5   0.0      0.055   12.8   0.0    1.2  1  DUF1776          Fungal family of unknown function (DUF1776)
      0.036   14.6   0.1      0.073   13.6   0.1    1.5  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
       0.04   13.8   0.1      0.063   13.2   0.1    1.2  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.0   0.0   2.1e-61   4.2e-58       1     190 [.      15     201 ..      15     205 .. 0.98

  Alignments for each domain:
  == domain 1  score: 196.0 bits;  conditional E-value: 2.1e-61
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 kv+ +tGa+sGIG+++a++l+ +Gakvv++dr+ ekl+++++el+e+   a+a+qvD+ ++++v++l++ + + +g+ld++ +NAG    gp++e + +
  CTQ29027.1  15 KVAAITGAASGIGLECARTLLGAGAKVVLIDREGEKLNKLVAELGEN---AFALQVDLMQADQVDNLLQGILQLTGRLDIFHANAGAYIGGPVAEGDPD 110
                 89*******************************************97...************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short 100 ewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                  w+rv+++N++++f ++r+vlp++++q+sG+I+++sS+ag vpv++ ++Y+AsK+av++++++ ++++a++g+rv av PG+v T++  ++
  CTQ29027.1 111 VWDRVLHLNINAAFRCVRSVLPHLIAQKSGDIIFTSSIAGVVPVIWEPVYTASKFAVQAFVHTTRRQVAQYGVRVGAVLPGPVVTALLDDW 201
                 *************************************************************************************998765 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.5   0.1   7.7e-45   1.5e-41       1     223 [.      21     236 ..      21     242 .. 0.92

  Alignments for each domain:
  == domain 1  score: 142.5 bits;  conditional E-value: 7.7e-45
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.E.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.v.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   GaasgIG ++A++l  +Ga+vvl d++ e+   +++l++elg++ + l++D  + +qv++l + + + +g+lDi+  nag      gp++e + + +
    CTQ29027.1  21 GAASGIGLECARTLLGAGAKVVLIDREGEK---LNKLVAELGENaFaLQVDLMQADQVDNLLQGILQLTGRLDIFHANAGAYIG--GPVAEGDPDVW 112
                   9*************************9998...99999999988537************************************9..*********** PP

                   HHHHHHHTHHHHHHHHHHHH..HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHH CS
  adh_short_C2  96 draldvnlyslfllakaalp..lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelle 190
                   dr+l+ n++++f++++ +lp  +++++g i+ +ss+++ + v    +y+a+K a++a++++  ++++++g+Rv av pgp+ T + ++ +     ++
    CTQ29027.1 113 DRVLHLNINAAFRCVRSVLPhlIAQKSGDIIFTSSIAGVVPVIWEPVYTASKFAVQAFVHTTRRQVAQYGVRVGAVLPGPVVTALLDDWP-----KA 204
                   ********************8555555***********99999999*****************************************999.....67 PP

                   HHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT-- CS
  adh_short_C2 191 elearaplgrlgtpeevaeaalfLasdeasyit 223
                   ++++    g l++p evae +lf++    + +t
    CTQ29027.1 205 KMDEALANGSLMQPIEVAESVLFMVTRS-KNVT 236
                   88888899999*************9854.5555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.2   7.4e-14   1.5e-10       4     168 ..      18     179 ..      16     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 7.4e-14
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE-.--------TTT-- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGviha.Agvlrdklleemt 101
                  itG++ g+Gle ar+l+  ga+ +vl+ R++   e+   l + +++lg +  ++++D+ ++d+v +ll+ i + ++++  ++ha Ag+   ++++e +
  CTQ29027.1  18 AITGAASGIGLECARTLLGAGAK-VVLIDREG---EK---LNKLVAELGENAFALQVDLMQADQVDNLLQGILQLTGRLD-IFHAnAGAYIGGPVAEGD 108
                 59*******************96.78999993...23...333344557799999******************9999997.666559************ PP

                 HHHHHHHHTTTTHHH.....HHHHHHTTTS--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHH CS
          KR 102 aedleqvlapKvkGa.....wnLhelledesldffvlfSSiagllgsagqanYaaaNaflDalaeyrrsqgl 168
                  + +++vl+  +++a      +L +l++++s d ++++SSiag++    +  Y+a    + a++++ r+q +
  CTQ29027.1 109 PDVWDRVLHLNINAAfrcvrSVLPHLIAQKSGD-IIFTSSIAGVVPVIWEPVYTASKFAVQAFVHTTRRQVA 179
                 *********999987322223455566656666.6899***************************9998865 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.2e-05     0.024      30      95 ..       8      75 ..       2      82 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
                  SBS-GTTSEEEEES-.SHHHHHHHHHHHHTT-EEEEESSSHHHHH.CHHHHTCEECSHHHHHHH-SEE CS
  2-Hacid_dh_C 30 lgkelsgktvGiiGl.GrIGqavakrlkafgmkviaydrskkkee.eeeelgvelvsleellaesDiv 95
                  + ++lsgk  +i G+   IG + a++l + g+kv+ +dr  +k +  ++elg +   l+  l ++D v
    CTQ29027.1  8 MNTSLSGKVAAITGAaSGIGLECARTLLGAGAKVVLIDREGEKLNkLVAELGENAFALQVDLMQADQV 75
                  67899*********7256**********************9876645566666666777777777665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   2.3e-05     0.046       2      61 ..      18      80 ..      17     194 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.3e-05
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl....elveldltdrsalerlfk 61
                 +tGa+  iG   ++ ll +g +v+ +dr+ ++ n+   e l       ++dl++++++++l++
  CTQ29027.1 18 AITGAASGIGLECARTLLGAGAKVVLIDREGEKLNKLVAE-LgenaFALQVDLMQADQVDNLLQ 80
                59****************************6666654433.36998899********9999887 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.1e-05     0.041       3     166 ..      19     188 ..      17     196 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.1e-05
                      EETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------H..HHHH CS
  Polysacc_synt_2   3 vtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhV..Plve 94 
                      +tGa+  iG e  r++l    +k++l++r+  kl ++  el e++ +  l+v+   ++   +  + l+ +l+ ++   +fha A   +  P++e
       CTQ29027.1  19 ITGAASGIGLECARTLLGAG-AKVVLIDREGEKLNKLVAELGENAFA--LQVD---LMQADQVDNLLQGILQLTGRLDIFHANAGAYIggPVAE 106
                      9**********999888776.57889999999*******99654444..4334...3333344566788888888888***8764444349999 PP

                      HSH...HHHHHHHHHHHHHHHHHH....HHTT-SEEEEEEEGGGSS--...SHHHHHHHHHHHHHHHGGG--SSS--EEEEE CS
  Polysacc_synt_2  95 enp...leaiktNvlgtenvieaa....ieagvkkvvliStDKAvnPt...nvmGatKrlaekllqalakeseekktkfvvv 166
                        p     +++ N+ ++  +++      i+++  ++++ S+   v P+    v+ a+K + + ++ +++++ ++   ++ +v
       CTQ29027.1 107 GDPdvwDRVLHLNINAAFRCVRSVlphlIAQKSGDIIFTSSIAGVVPViwePVYTASKFAVQAFVHTTRRQVAQYGVRVGAV 188
                      8652224678889988877666551111566666788888888888874445788888888777777777665444444333 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.8e-05     0.055     102     192 ..      98     185 ..      82     192 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.8e-05
     DUF1776 102 syptgpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidv 192
                  y  gp+++  ++ w  +l+ ++ + +  + + lp+l +   qk+  i+++ si   + +   ++ +    a++a++++ +r+++++++ v
  CTQ29027.1  98 AYIGGPVAEGDPDVWDRVLHLNINAAFRCVRSVLPHLIA---QKSGDIIFTSSIAGVVPVIWEPVYTASKFAVQAFVHTTRRQVAQYGVRV 185
                 6888**********************************9...99999********999999999999999999999999999999988877 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   3.7e-05     0.073       8      48 ..      24      60 ..      17      80 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.7e-05
                SHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHH CS
   Pyr_redox  8 GyiglElAgalaelgkkVtvversdkllrllDeeaskilqe 48
                + iglE+A +l   g+kV +++r+ + l    +++ ++l e
  CTQ29027.1 24 SGIGLECARTLLGAGAKVVLIDREGEKL----NKLVAELGE 60
                579*********************9999....344444444 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.2e-05     0.063       5      67 ..      20      82 ..      16      99 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-05
                E--.SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCE CS
     3HCDH_N  5 iGa.GtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalari 67
                 Ga   +G + a  ++ ag +Vvl+d++ e+l+k  +++ ++   l +   +++++v+++l+ i
  CTQ29027.1 20 TGAaSGIGLECARTLLGAGAKVVLIDREGEKLNKLVAELGENAFAL-QVDLMQADQVDNLLQGI 82
                5553348999*****************************9976665.56777888999888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1860.39
//
Query:       CTQ29028.1  [L=535]
Description: FGGY carbohydrate kinase domain-containing protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-47  162.3   2.4    1.6e-47  161.8   1.7    1.6  2  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
    3.4e-31  108.7   0.0    5.4e-31  108.0   0.0    1.3  1  FGGY_N       FGGY family of carbohydrate kinases, N-terminal 
  ------ inclusion threshold ------
      0.065   12.7   0.1       0.11   11.9   0.0    1.5  2  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.83     5e+03      99     138 ..     154     195 ..     151     198 .. 0.80
   2 !  161.8   1.7   2.7e-51   1.6e-47       2     197 ..     278     485 ..     277     486 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.83
      FGGY_C  99 rapywdpdargtitglssstt...lahiarAaleavalqlrai 138
                  +p+ +++ar+ +++l ++ t    ++ ar+++  ++  ++  
  CTQ29028.1 154 NRPHIYQQARH-FFDLADYLTwrsTGDEARSVCTVTCKWTYLA 195
                 67888999999.8888888888889999999999999888765 PP

  == domain 2  score: 161.8 bits;  conditional E-value: 2.7e-51
      FGGY_C   2 kvslGTssflllvgtkpvisehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdagev.............eeslaelaaaeavadag 87 
                 ++++GTss+ ++++++ v +++g+++p+++++ +++++ eg++++ag++++ ll+++ ++ e r++++               +++a    +eav+ a+
  CTQ29028.1 278 AYVFGTSSCTMTTTQEAV-FVPGVWGPYYSAMVPGYWLSEGGQSAAGAAIDQLLSFHPAAAEAREQAKAagvplpvwladrvLTQVA--SPSEAVTLAA 373
                 789***************.**************************************666666666666688*******64433333..46699***** PP

      FGGY_C  88 gvvfvpafsglrapywdpdargtitglssstt...lahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpkta 183
                 g+++vp+f g+rap++dp+a++ i+gl+++++   l++++ A l+++ ++lr+i++a  ++ g++ ++++++GG+ +++l++qllAd++gv ++ ++++
  CTQ29028.1 374 GLHVVPEFLGNRAPLADPHAKALIAGLGMERDldnLTALYVAGLCGIGYGLRQIIDAQRAC-GIESENIVISGGAGQHPLVRQLLADACGVSIVSTASR 471
                 *******************************999***************************.************************************* PP

      FGGY_C 184 eatalGaAilAava 197
                 e+++lG Ail+ava
  CTQ29028.1 472 EPVLLGSAILGAVA 485
                 ************98 PP

>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   9.1e-35   5.4e-31       2     245 .]       8     265 ..       7     265 .. 0.91

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 9.1e-35
                 EEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEES........ CS
      FGGY_N   2 ilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpL........ 92 
                 i+g+D+G  s++a v++  g+++a+a++e++l +   + +eq+ +eiwqa++ +i+ +++ ag+s++ i++Ig+ +   +lv++  nd pL        
  CTQ29028.1   8 IIGVDVGSGSVRAGVFNLRGELLAHATREITLFRSAGNKVEQSSREIWQAVCYCIKTAVASAGVSPSSIAGIGFDAT-CSLVVIGDNDAPLavgpsdda 105
                 79************************************************************************876.578888888999866666666 PP

                 .SEEE-TT--TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-H CS
      FGGY_N  93 .ynailwkdrrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnikklewde 190
                  +n+i+w d+r+ +++ek+++    + +    g  +s+     k+ Wlken p ++++++ f    dyL+wr tg  +  v  +     +  +++ wd 
  CTQ29028.1 106 dRNIIVWMDHRATGQAEKINA--TGHPVLRYVGGKISPEMQTPKILWLKENRPHIYQQARHFFDLADYLTWRSTGDEARSVCTVTCKWTYLAHEQRWDA 202
                 679*****************9..5566778889999999999*********************************9988888888888888999***** PP

                 HHHHHTT--GG.......GS-EEE-TCCEEEE.EECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 191 ellailgipee.......lLPklvesseiige.lkpelaaklGlkegvpvvggggDqqaaalG 245
                   +  +g++e        +  ++v ++  +ge l + +a+++Gl  g+pv+ g  D  a+ +G
  CTQ29028.1 203 GYFRQIGLEELadedfvrIGQRIVDPGTPCGEgLCATAAEEMGLPIGTPVAVGMIDAHAGGIG 265
                 ********99777777756678999*****98567889999***************9998776 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.9e-05      0.11       1      63 [.       9      77 ..       9     196 .. 0.83
   2 ?   -3.5   0.1      0.99   5.9e+03     123     140 ..     249     266 ..     236     282 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
                 EEEEE-SSEEEEEEEETTTEEEEEEEE--TTS-HHH.........HH.......HHHHHHHHT--GGGEC CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlgrgitnsanlesvrfeaaekvleea.......ltealerageeeadie 63
                 +G+D+Gs++++a +++ +ge+l+ +    + ++s++ + +e++ +e+       +++a++ ag ++++i+
   CTQ29028.1  9 IGVDVGSGSVRAGVFNLRGELLAHATREITLFRSAGNK-VEQSSREIwqavcycIKTAVASAGVSPSSIA 77
                 7*******************999998888777766643.4433333300011115555566666665555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.99
                  TEEEEEEEESS--TTSHH CS
  BcrAD_BadFG 123 gkvenfqmndrcaageGr 140
                  g++++++m d  a+g G 
   CTQ29028.1 249 GTPVAVGMIDAHAGGIGT 266
                  777888888888888774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3962.01
//
Query:       CTQ29029.1  [L=427]
Description: Ribitol transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-29  103.4  80.1    1.2e-19   70.4  43.4    2.0  2  MFS_1       Major Facilitator Superfamily
     0.0014   17.6  17.6       0.43    9.4   0.1    3.6  3  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4  43.4   1.4e-23   1.2e-19       9     295 ..      25     313 ..      17     315 .. 0.85
   2 !   46.8  28.8     2e-16   1.8e-12       3     174 ..     232     407 ..     230     423 .. 0.82

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 1.4e-23
       MFS_1   9 alarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa...sslwlllvlrvlqGlgagalf 103
                 +++ + + +a+ +++ ++lg++p+++++++tly+l+aa+++ + G++++ + +r+ +l+g++l++++ +l+l+f+   +++ l+l++  + Gl++ +++
  CTQ29029.1  25 FMTGDGFELAFLSHYIKALGFTPAQASFAFTLYGLAAALSAWVSGVVAEIITPRKAMLIGFVLWCVFhVLFLVFGlgrANYALILLFYGIRGLAYPLFL 123
                 333333444444466699*************************************************888888966799999*************9999 PP

       MFS_1 104 pagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllll.peepperkrkspkeeekgtgpaplvpaw 200
                  + +++i + +  +  ++a+g++ a +s+G+ ++g  + ++ + ++g  ++ +++ ++++ +++++l+ +  +e p++  + +++e    + a+l  a 
  CTQ29029.1 124 YSFIVAIIHNVRSDSSSSALGWFWAVYSVGIgVFGSYIPSFTIPHIGEMGTLWLALLFCATGGIIALVSMrHTETPRHMQNLTTRE----KFAELGRAA 218
                 99999999999999*********************************667777777777777665555551555555555555555....666666689 PP

       MFS_1 201 kallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalglalla 295
                 ++l +++ +++  i+ +++++ ++g+ + +p+++++ lg++   + + + a++++ ++++ +++g ++ ++g+ + ++++++++++l++l++++l+
  CTQ29029.1 219 TLLYTNRSILFSSIVRIINTLSLFGFAVIMPMMFVDELGFT-TSEWLQVWAAFFFTTIFSNVFWGIVAEKMGWmKVIRWFGCIGMALSSLAFYYLP 313
                 9999999998788888888889999*******99*******.788888899999999999*************99999**************9987 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 2e-16
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfG....rrrvlllglllfalglllll..fasslwlllvlrvlq 95 
                 ++ ++++l+ + +++++p++  ++lg++ se   + ++++++++++++++G +++++G     r++ ++g++l++l++++l   f++++ + lv  +  
  CTQ29029.1 232 IVRIINTLSLFGFAVIMPMMFVDELGFTTSEWLQVWAAFFFTTIFSNVFWGIVAEKMGwmkvIRWFGCIGMALSSLAFYYLPqhFSHNFAMALVPAIAL 330
                 5678899999999999999889****777775558888********************77766667777777777774444457757777********* PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpe 174
                 G++  a+f  +aa++ ++ p  ++g ai++++++++l+  l+p+++ +l+ +++  +v ++ +++++laf l  l  +e
  CTQ29029.1 331 GIFV-AAFVPMAAVFPALEPN-HKGAAISVYNLSAGLSNFLAPAIAVVLLPYFSTIGVVIAYTALYILAFFLCPLIRVE 407
                 ***7.7777788999999888.**********************************************98854444433 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   4.6   0.00035       3.1      21      85 ..      35      97 ..      30     252 .. 0.87
   2 !    9.4   0.1   4.8e-05      0.43      25      65 ..     252     292 ..     242     295 .. 0.89
   3 !    7.6   2.9   0.00016       1.5     150     235 ..     294     394 ..     292     405 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00035
  MFS_1_like 21 YltiylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfi 85
                +l+ y+k  g+++++  +  ++  l + ls+ + gv+a+ +  rk+++ ++ +l++v+++ l+++
  CTQ29029.1 35 FLSHYIKALGFTPAQASFAFTLYGLAAALSAWVSGVVAEIITPRKAML-IGFVLWCVFHV-LFLV 97
                8999**************************************999976.57778888877.4433 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 4.8e-05
  MFS_1_like  25 ylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrk 65 
                 + ++ g++ se   + ++  +t+i+s  +wg +a+++g  k
  CTQ29029.1 252 FVDELGFTTSEWLQVWAAFFFTTIFSNVFWGIVAEKMGWMK 292
                 677899******************************99766 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00016
  MFS_1_like 150 qrlfGsvGyaifafitGilidhysvnllp.ysallyvlaallvisll.vvlilnetekesklkvtksl...............qvllnilknpeviifl 231
                 +r fG +G+a+++ ++ +l +h+s+n+   +  + +++++++v++++ ++++++  e ++k +   +                 vll  ++   v+i  
  CTQ29029.1 294 IRWFGCIGMALSSLAFYYLPQHFSHNFAMaL--VPAIALGIFVAAFVpMAAVFPALEPNHKGAAISVYnlsaglsnflapaiaVVLLPYFSTIGVVIAY 390
                 699***********************97651..334444455544432444555555555554443333334444444444444444444444444444 PP

  MFS_1_like 232 lval 235
                 +++ 
  CTQ29029.1 391 TALY 394
                 4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       993  (0.0553851); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3127.68
//
Query:       CTQ29030.1  [L=350]
Description: fructose-bisphosphate aldolase class I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-74  248.6   0.1    7.1e-74  248.4   0.1    1.1  1  DeoC      DeoC/LacD family aldolase


Domain annotation for each model (and alignments):
>> DeoC  DeoC/LacD family aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.4   0.1     4e-78   7.1e-74       2     235 .]      69     326 ..      68     326 .. 0.97

  Alignments for each domain:
  == domain 1  score: 248.4 bits;  conditional E-value: 4e-78
                 EEEEECCSHHHHHHHHCTSSHHHHHHHHHHHHHHGGGSSEEEEETTTHHHHHHCSCTTSEEEEETECSSCCTTSTTEEEETTCHHHHHHHTT-SEEEEE CS
        DeoC   2 vilavDqrvankddtasaqneqledlkalvkealtpgasavlldpgviasaskeyakdiallvkldkgtyllkskqrdvdevasveeakalGAdavkvv 100
                 +il+vDq+v++++++++a+n++++d+k++v+ a+++g+++v+ ++gv+as+s++ya++i++lvkl+++++l++++++d++ +asve+a+++GA+av+++
  CTQ29030.1  69 SILPVDQGVEHSAGASFAANPLYFDPKNIVELAIEAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPTEYDQTLYASVEQAFNMGAVAVGAT 167
                 89************************************************************************************************* PP

                 EEEHTTTTCHHHHHHHHHHHHHHHHHHHTEEEEEEEEE-CTTBSSTT....CHHHHHHHHHHHHTCCT-SEEEE--S.....SCC.B.HHHHHHHHHHH CS
        DeoC 101 vyyradgseeeqqklaeikrvkeacheeglplilelylrdeaikdek....vdpdlvaeAarvsaelGaDiiKvevp.....kevvnateedaevfkdv 190
                 +y+   gse+++++++ei++++e++he+gl+++l++ylr++a+k+++    v++dl+++A++++a++GaDi+K++++      ++vn +++d +v++++
  CTQ29030.1 168 IYF---GSEQSRRQIEEISAAFERAHELGLVTVLWAYLRNSAFKKDGvdyhVSADLTGQANHLAATIGADIVKQKMAennggYKAVNFGYTDDRVYSKL 263
                 ***...**************************************************************************99788************** PP

                 HHCHSST..........E....EEEETTS..SHHHHHHHHHHHHH..HHTHCEEEESHHHHTT CS
        DeoC 191 ikaapvp..........g....vvlsGGv..seedfletvedAvk..eagasGvlsGRaifqk 235
                 ++++p++          +    +++sGG+  +e+d++++v++Av+  +ag++G+++GR++f+k
  CTQ29030.1 264 TSDNPIDlvryqlancyMgragLINSGGAagGETDLADAVRTAVInkRAGGMGLILGRKAFKK 326
                 *******999888887615667***************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2796.07
//
Query:       CTQ29031.1  [L=266]
Description: bifunctional hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-93  312.2   0.0    2.5e-93  312.0   0.0    1.0  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
      4e-07   29.6   0.2    4.9e-07   29.4   0.2    1.2  1  PfkB          pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.0   0.0   2.8e-97   2.5e-93       1     246 []      13     260 ..      13     260 .. 0.98

  Alignments for each domain:
  == domain 1  score: 312.0 bits;  conditional E-value: 2.8e-97
                   ETTSSSHHHHHHHHHHHTTEEEEEEEEEEEEEETTCEEEEEE--HHHHHHHHHHHHHTS--SEEEE-S--SHHHHHHHHHHHHHTTS.SEEEE---S CS
  Phos_pyr_kin   1 DssGGAGiqADlktfsalgvygmsvitaltaqntkgvkevhplpaelveaqleavledvkvdavKiGmlasaeiievvaeklkkykv.pvVlDPVmv 96 
                   D+sGGAGiqADlktfsalg+yg+s+ital+aqnt+gv++v+ +++++v+aql++v++dv++d  KiGmla+++i+e+vae l++y+v +vVlD Vm+
    CTQ29031.1  13 DPSGGAGIQADLKTFSALGAYGCSAITALVAQNTRGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLARYRVaNVVLDTVML 109
                   9***********************************************************************************9999********* PP

                   SCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT.---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE--- CS
  Phos_pyr_kin  97 aksgselleeeavealkeeLlplatvitPNlpEaeaLlg.ekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaerie 192
                   aksg++ll+++ave+l+++Llp++++itPNlpEa+aLl+  ++++e +m e++++ll+lg+ aVl+kGghl++ e+   d+l+++e++++++a+r++
    CTQ29031.1 110 AKSGDPLLSASAVETLRQRLLPQVSLITPNLPEAAALLDaPHARNEREMLEQGRALLALGCGAVLMKGGHLDDAESP--DWLFTREGEQRFTAPRVQ 204
                   ***************************************88999***************************666666..****************** PP

                   -S--BTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHH..CG-BSTSSS-B-- CS
  Phos_pyr_kin 193 tknthGtGCtlssaiaaelakgesleeAvkkAkeyvteaik..ealelgkgagpvn 246
                   tknthGtGCtls+a+aa   ++ ++  +v +Ak+++++a++  ++le+g+g+gpv+
    CTQ29031.1 205 TKNTHGTGCTLSAALAALRPRHADWAATVIEAKAWLSAALAqaDSLEVGHGIGPVH 260
                   ****************************************99999*********96 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.2   5.4e-11   4.9e-07     138     280 ..      81     234 ..      39     249 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 5.4e-11
                 EECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHH.....HHHHHHHHH.CTESEEEEEHHHHHHHHTSCT.HSHHHHHHHHHHHHHTTSSEEEEEEG. CS
        PfkB 138 llsselpeavleelaeaaknggtfdpnlldplgaq.....fkeallell.aladllkpneeElealtgekl.edieealaalhklkakgaktvvvtlG. 228
                 l  +++ eav e+la  + ++   d ++l+++g+      ++e+l++ l ++++l++pn  E++al+++++  ++ e l+++ +l+a g   v+++ G 
  CTQ29031.1  81 LAETDIVEAVAERLARYRVANVVLDTVMLAKSGDPllsasAVETLRQRLlPQVSLITPNLPEAAALLDAPHaRNEREMLEQGRALLALGCGAVLMKGGh 179
                 55566778888888888888888999999999988998997777766555*********************99999********************994 PP

                 ....GGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHH CS
        PfkB 229 ....keGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealr 280
                     + + ++++++ge++++a p v+  +t G+G +  ++++a   + ++++  + 
  CTQ29031.1 180 lddaESPDWLFTREGEQRFTA-PRVQTKNTHGTGCTLSAALAALRPRHADWAATVI 234
                 333345678888*********.9********************9999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1968.80
//
Query:       CTQ29032.1  [L=257]
Description: hydoxyethylthiazole kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-93  311.7   6.3      4e-93  311.3   6.3    1.0  1  HK            Hydroxyethylthiazole kinase family
    2.6e-05   23.7   1.6    3.7e-05   23.2   1.6    1.2  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
    0.00023   20.7   2.1    0.00029   20.4   2.1    1.1  1  Carb_kinase   Carbohydrate kinase
  ------ inclusion threshold ------
       0.08   12.7   3.9       0.33   10.7   0.0    2.7  3  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
        7.6    6.4   9.1        2.8    7.8   1.0    3.2  3  Robl_LC7      Roadblock/LC7 domain


Domain annotation for each model (and alignments):
>> HK  Hydroxyethylthiazole kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.3   6.3   1.1e-96     4e-93       4     242 ..      17     253 ..      14     256 .. 0.99

  Alignments for each domain:
  == domain 1  score: 311.3 bits;  conditional E-value: 1.1e-96
                 HHHH--EEEEE--TTTHHHHHHHHHHHT-EEEE--STTTHHHHHHTSSEEEEE-TT--HHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHH CS
          HK   4 lreksPlvhhiTNkVaqnfsANvllAlgaSPimseaeeEvselakianaLllNiGtleekaiealkaAvksakevnrPvvlDPVgvgAtelRrelalel 102
                 lr++sPlvh++TN+V+q+f+ANvllA+gaSP+m+++  E++++a+ia+aLl+N+Gtl+e ++ a++aAv++a+++++P++lDPV+vgA+++R+ +++el
  CTQ29032.1  17 LRAHSPLVHCMTNDVVQTFTANVLLAVGASPAMVIDPREAAQFAAIADALLINVGTLTEDRAVAMRAAVEHARQAGKPWTLDPVAVGALTVRTAFCHEL 115
                 899***********************************************************************************************9 PP

                 HHHS--SEEEEEHHHHHHHHTSSCCSCSSSSSS-SHHHHHHHHHHHHHHTSEEEEESSSEEEEESSEEEEEE-S-GGGGGSTTHHHHHHHHHHHHHTTB CS
          HK 103 lkevklavikGNasEilslaglelkvkGvDskeaataavaavqkvAqklrvvvvvtGevDvvsdgkkvyklknGtellgkitasGCllgsvvaaflavk 201
                     ++a+i+GNasEil+lag++   +GvD++++a+aa++a+q++A++l +vv+vtGevD+v+dg++v+++ +G++l+++++++GC+l++vvaa++a++
  CTQ29032.1 116 Q-ALQPAAIRGNASEILALAGMSAGGRGVDTTDTAAAALSAAQALARRLATVVAVTGEVDYVTDGERVLSVAGGNPLMTRVVGTGCALSAVVAASAALP 213
                 8.9************************************************************************************************ PP

                 SSHHHHHHHHHHHHHHHH.HHHHHHHTTHHHHHHHHHHHHH CS
          HK 202 kdkllaaveavllykvAgkeaaarsegsgsFqvelldalsq 242
                  d+l+++++a+ l+k+Ag e aar+ g+gsF++++ldal+q
  CTQ29032.1 214 GDRLENVAAACGLMKQAG-EIAARQGGPGSFIPAFLDALYQ 253
                 ******************.9999****************98 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   1.6     1e-08   3.7e-05      64     228 ..      68     227 ..      26     241 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1e-08
                   EEE-S--SHHHHHHHHHHH..HHTTSSEEEE---SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT........---SSHHHHHHHHHH CS
  Phos_pyr_kin  64 vKiGmlasaeiievvaekl..kkykvpvVlDPVmvaksgselleeeavealkeeLlplatvitPNlpEaeaLlg........ekikteedmkeaakk 150
                   + +G l++  ++++ a++   ++ + p  lDPV v   g+  ++   ++ l+  L p    i  N  E+ aL+g         + +t++ + +aa++
    CTQ29032.1  68 INVGTLTEDRAVAMRAAVEhaRQAGKPWTLDPVAV---GALTVRTAFCHELQA-LQPA--AIRGNASEILALAGmsaggrgvDTTDTAAAALSAAQA 158
                   45788887777666554442155555999999988...555666666666665.6664..4899*********965554222222244556667777 PP

                   HHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHH CS
  Phos_pyr_kin 151 llklgakaVlikGghlegeeavvtdvlydgeeveeleaerietknthGtGCtlssaiaaelakgesleeAvkkAkeyv 228
                   l++  a+ V ++G        v  d++ dge+v  + +     ++  GtGC+ls+++aa+ a   +  e v+ A   +
    CTQ29032.1 159 LARRLATVVAVTGE-------V--DYVTDGERVLSVAGGNPLMTRVVGTGCALSAVVAASAALPGDRLENVAAACGLM 227
                   77777777777775.......3..99***********999999*****************999888888787776555 PP

>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   2.1   8.1e-08   0.00029      44     231 ..      45     240 ..      17     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 8.1e-08
                  TTTTCEECCTTHTTTS...--SSS-SEEEE-TT.-SSSHCHHH..HCHHHCCCCS-EEEEGGGGGSGGGG......TTTTSSEEEE--HHHHHHHCTT CS
  Carb_kinase  44 ylpevivhplledeqakileklerldavviGpG.Lgrdekikk..lleevlekdeplviDAdgLnllaqkne...lserkaeviLTPhkkEfkrLlka 135
                  ++p ++ +p++ ++q+     +  +da++i  G L +d +++   ++e+++++ +p  +D  +   l+         +  ++  +  ++ E   L+++
   CTQ29032.1  45 ASPAMVIDPRE-AAQF-----AAIADALLINVGtLTEDRAVAMraAVEHARQAGKPWTLDPVAVGALTVRTAfchELQALQPAAIRGNASEILALAGM 136
                  33333333333.3444.....56677777777744444443334499999999999999987666666665554455556777888999999999999 PP

                  TCH........HCCSHHHHHHHHHHHHTTEEEEESTTSEEEECTTEEEEE----GGG.-STTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHH CS
  Carb_kinase 136 ivk........keddrlelarelaqklnavvllkgekdvivspegevlinstgssal.akGGsGDvLaGligalLaqneasyeaaiaaawlhgaasde 224
                  + +             l +a++la++l +vv + ge+d + + ++ vl +  g++++ ++ G+G  L+ +++a  a   + +e ++aa+ l  +a++ 
   CTQ29032.1 137 SAGgrgvdttdTAAAALSAAQALARRLATVVAVTGEVDYVTD-GERVLSVAGGNPLMtRVVGTGCALSAVVAASAALPGDRLENVAAACGLMKQAGEI 233
                  9888999988778888999********************999.999999*****9873678***********************************99 PP

                  HCCCT-T CS
  Carb_kinase 225 aaekkgv 231
                  aa + g 
   CTQ29032.1 234 AARQGGP 240
                  9988765 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.2e-05      0.33      63     150 ..      11      96 ..       8      98 .. 0.89
   2 ?    2.2   0.3      0.04   1.4e+02      35      58 ..     150     175 ..     135     196 .. 0.71
   3 ?   -1.0   0.1      0.37   1.3e+03      29      54 ..     197     225 ..     174     225 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.2e-05
                   GGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEE CS
  TPP_enzyme_C  63 qelatavrrnlpitvvvlnNegygmtggqqepfggkrksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpal 150
                    +l +  r + p+++++ n+ +  +t +     g++  +  ++   +  +fa++a al +++ +++++    +++a++ a++ ++p  
    CTQ29032.1  11 AHLRHLLRAHSPLVHCMTNDVVQTFTANVLLAVGASPAMVIDP--REAAQFAAIADALLINVGTLTEDRAVAMRAAVEHARQAGKPWT 96 
                   6899999**99******************99999999998885..88899********9997777788889*********99988865 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.04
                   HHHHHHHH..HSTTSEEEEEEEHHHH CS
  TPP_enzyme_C  35 paAiGakl..akpdrevvaivGDGgf 58 
                   +aA+ a+   a++ ++vva++G  ++
    CTQ29032.1 150 AAALSAAQalARRLATVVAVTGEVDY 175
                   333333331233346*******8766 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.37
                   -TTTHHHHHHHHHHHST.T..SEEEEEEE CS
  TPP_enzyme_C  29 tmGyglpaAiGaklakp.d..revvaivG 54 
                     G +l+a ++a++a p d  ++v a +G
    CTQ29032.1 197 GTGCALSAVVAASAALPgDrlENVAAACG 225
                   56899999999999877433456766666 PP

>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2     0.051   1.8e+02      33      55 ..      51      73 ..      39      96 .. 0.70
   2 ?    7.8   1.0   0.00078       2.8      35      66 ..     143     175 ..     131     178 .. 0.84
   3 ?   -0.2   0.1      0.24   8.7e+02      29      45 ..     208     224 ..     203     239 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.051
                SSSS-HHHHHHHHHHHHHHHHHH CS
    Robl_LC7 33 ldnddadqlAalasgllsaakaa 55
                +d+ +a q+Aa+a +ll+   ++
  CTQ29032.1 51 IDPREAAQFAAIADALLINVGTL 73
                67777777777777776554444 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00078
                 SS-HHHHHHHHHHHHHHHHHHHHHCT.SSSECE CS
    Robl_LC7  35 nddadqlAalasgllsaakaaarelg.egelke 66 
                  d +d  Aa++s+++++a+++a+    +ge+ +
  CTQ29032.1 143 VDTTDTAAAALSAAQALARRLATVVAvTGEVDY 175
                 578999***************998887777765 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.24
                 EECCSSSS-HHHHHHHH CS
    Robl_LC7  29 atstldnddadqlAala 45 
                 a+ +l++d+++ +Aa++
  CTQ29032.1 208 ASAALPGDRLENVAAAC 224
                 34788999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2048.42
//
Query:       CTQ29033.1  [L=140]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-08   35.7   0.2    1.4e-08   35.3   0.2    1.1  1  Usp             Universal stress protein family
  ------ inclusion threshold ------
      0.026   13.3   0.0      0.037   12.8   0.0    1.1  1  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.2   1.6e-12   1.4e-08       2     139 ..       4     136 ..       4     138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.6e-12
                 -SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHH CS
         Usp   2 ykrIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevae 100
                 y++ lV +  s++   +l++A+++a+++g +++++h++ + +            + ++e  +a++ +  ++ a+    ++ ++ ++     e     ++
  CTQ29033.1   4 YHHALVLINSSQDGVPLLQHAARMAEENGMRITIAHISTDYRALNYVSDSLRDDQVSQEVIQAKALL--NELACTVSLPVDTLSLVTTRRFEDVETCVR 100
                 78899***8888888**********************977665544444444443333333333333..358999************************ PP

                 HTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEE CS
         Usp 101 eedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlv 139
                 ++++dli+ G++   +l + +l S+s   ++h + +Vl+
  CTQ29033.1 101 QRQIDLIIAGHHN--RLLG-VLSSHSLEYINHLNLDVLI 136
                 *************..6666.69***************98 PP

>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.1e-06     0.037     284     354 ..      21     115 ..      15     120 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.1e-06
                     HHHHHHHHHHHT-EEEEEEESSS-HHHHH...............HHHHHS.TT..........SEEEES.CHHHHHHHHHHHT-SEEEE-CCHHH CS
  Oxidored_nitro 284 vvalarllkelGmevvaagtetahrddee...............rlkaeleeg.........epeviddadleeleelikelkpdlllggskery 354
                     + + ar+ +e Gm++  a+++t  r++                 ++ka l e          +   + +  +e++e  +++ + dl+++g++ r 
      CTQ29033.1  21 LQHAARMAEENGMRITIAHISTDYRALNYvsdslrddqvsqeviQAKALLNELactvslpvdTLSLVTTRRFEDVETCVRQRQIDLIIAGHHNRL 115
                     66899********************999556899999999999966666666667777777766788888*********************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1121.19
//
Query:       CTQ29034.1  [L=304]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-33  113.8   8.9    9.9e-33  113.3   8.9    1.3  1  LysR_substrate  LysR substrate binding domain
    4.8e-15   55.2   5.6      6e-15   55.0   2.2    2.6  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.024   14.0   0.0      0.036   13.5   0.0    1.4  1  SBP_bac_3       Bacterial extracellular solute-binding protei
       0.14   11.7   0.2       0.35   10.5   0.1    1.7  2  DAGK_cat        Diacylglycerol kinase catalytic domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   8.9   2.2e-36   9.9e-33       3     208 ..     100     303 ..      98     304 .] 0.96

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 2.2e-36
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLargepv 96 
                     g  g++rig +p++++ l+p l + +++++P++++e +  ++++l+++l++ge+D++i a +   +++l + pL e+p+v+v+++d pLa+++ +
      CTQ29034.1 100 GGDGTVRIGLVPSVSSLLFPLLPQTLAEAFPRLRIEFHDQTNDALIQALQRGEIDFGIGAIDSsLPAELLVYPLREDPFVAVLHRDDPLAAQAHL 194
                     678************************************************************9******************************* PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTC CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgr 191
                     ++ +L + +  +++    +++l+ ++ ++++l+++ +++v+ +e+l++lv++ l +a+lp+++   +l+d+ l+++ l++p+l r+++l++ ++ 
      CTQ29034.1 195 PWKQLVGRDIAVFS-KGNIQRLVAALVESHRLTLTTRYQVDYIETLYGLVRSRLAVAILPALYT-THLQDPALRVAHLQQPALARTVALMRGPQA 287
                     *************9.455778888899************************************8.88*************9999*****999999 PP

                     CCHHHHHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidflreal 208
                      l+p++++   +l++al
      CTQ29034.1 288 -LPPLIEDCFSLLQAAL 303
                     .**********999886 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   2.2   1.3e-18     6e-15       1      59 [.      14      72 ..      14      73 .. 0.97
   2 ?    0.1   0.1      0.17   7.7e+02      22      37 ..     267     282 ..     264     284 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 1.3e-18
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l+ql++fv++a+ ++ft  A +L +sqpa+s ++++ E  lg +L++Rt   ++LTe G
  CTQ29034.1 14 LKQLQYFVTLAQLRHFTDTASRLAISQPALSSALRQIETVLGGKLVNRTAATVTLTELG 72
                68**********************************************999******98 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.17
                 HHTS-HHHHHHHHHHH CS
       HTH_1  22 eLglsqpavsrqikrL 37 
                   +l qpa+ r ++ +
  CTQ29034.1 267 VAHLQQPALARTVALM 282
                 5799*******99877 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.1e-06     0.036      38      67 ..     132     161 ..     123     252 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.1e-06
                 -EEEEEE-SGGGHHHHHHTTSSSEEESSEB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  38 vkvefvpvswdelipalksgkvDiaiaait 67 
                 +++ef +++ d+li+al+ g++D+ i+ai 
  CTQ29034.1 132 LRIEFHDQTNDALIQALQRGEIDFGIGAID 161
                 5799****99****************9986 PP

>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   7.8e-05      0.35      43      69 ..      78     106 ..      43     110 .. 0.72
   2 ?   -3.1   0.0       1.3   5.6e+03      74      90 ..     241     254 ..     236     254 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.8e-05
                 HHHHH..HHHHHHCC-SEEEEEESHHHHH CS
    DAGK_cat  43 dakel..akeakeegvdlivvaGGDGtvs 69 
                 +a+++  +++a+ ++++ iv aGGDGtv+
  CTQ29034.1  78 HAQRIlsVAQAAFSDMQQIVEAGGDGTVR 106
                 4555533455555689***********95 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
                 HHCTHHCTTSEEEEEE- CS
    DAGK_cat  74 glleelatkpplgiiPl 90 
                 gl++   ++++++i+P+
  CTQ29034.1 241 GLVR---SRLAVAILPA 254
                 5555...9999****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2314.27
//
Query:       CTQ29035.1  [L=24]
Description: hypothetical protein CH1034_250163 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.094   12.5   0.1       0.13   12.1   0.1    1.4  1  TetM_leader  Tetracycline resistance determinant leader pepti


Domain annotation for each model (and alignments):
>> TetM_leader  Tetracycline resistance determinant leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.3e-06      0.13       6      16 ..       1      14 [.       1      17 [. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.3e-06
  TetM_leader  6 mVmHKNPS...DKS 16
                 mV+H NPS   DK 
   CTQ29035.1  1 MVLHNNPSlsgDKF 14
                 9******9555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (24 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        55  (0.00306766); expected 358.6 (0.02)
Passed bias filter:                       53  (0.0029561); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 202.23
//
Query:       CTQ29036.1  [L=603]
Description: Adenine deaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-42  142.9   0.0    2.5e-41  140.9   0.0    1.9  2  Adenine_deam_C  Adenine deaminase C-terminal domain
    9.6e-22   77.8   0.4    1.9e-20   73.5   0.4    2.1  1  Amidohydro_1    Amidohydrolase family
    2.7e-08   33.8   0.3    0.00012   21.7   0.1    2.4  2  Amidohydro_3    Amidohydrolase family
  ------ inclusion threshold ------
        0.3   10.5   0.0       0.44    9.9   0.0    1.1  1  Alpha_L_fucos   Alpha-L-fucosidase


Domain annotation for each model (and alignments):
>> Adenine_deam_C  Adenine deaminase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.2   8.8e+02     108     154 ..     222     268 ..     217     271 .. 0.76
   2 !  140.9   0.0   5.5e-45   2.5e-41       3     167 ..     412     577 ..     410     579 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.2
                     TTTBBSS-HHHHHHHHHHHHHHHHTTS-TTTBSGGGGGS.TT-TTSSS CS
  Adenine_deam_C 108 aGlmSdepaeevaekleeleaalkelgvkledpfmtlsf.lalpviPe 154
                     aG+ Sd+++ +  ++le+l+a l+ ++++ ++p++   +  al ++P+
      CTQ29036.1 222 AGVTSDHELTSADDALEKLRAGLT-IEIRGSHPYLLPDIvAALKTLPH 268
                     8999***************98888.88877777766554134556665 PP

  == domain 2  score: 140.9 bits;  conditional E-value: 5.5e-45
                     S-EEEEEEEEEETTEEE-..-TTEEEEEEE--SSSS.--EEEEEEESS--BSSEEEES--TTT--EEEEESSHHHHHHHHHHHHHTTSEEEEEET CS
  Adenine_deam_C   3 iTkelevelpvkdgvvvadlekdllkiavveRhgkt.gnvgvgfvkgfglkkgAiAssvahDshniivvGtndedmalAvnrvielgGGivvved 96 
                     +T++ eve++v+dg v+     ++  i+v +Rhg++ +++++++++g+g  +gAiA+s++hDshn++v+G++ +dmalA+n++i+ gGG++++++
      CTQ29036.1 412 FTQWGEVEVQVRDGIVQL--PAGFSLIWVKHRHGRHqATPQIALLEGWGELRGAIATSYSHDSHNLVVLGRDANDMALAANQLIASGGGMALAQQ 504
                     799***********8876..89************974799******************************************************* PP

                     TEEEEEEE-TBTTTBBSS-HHHHHHHHHHHHHHHHTTS-..TTTBSGGGGGSTT-TTSSSEEEETTSEEETTT CS
  Adenine_deam_C  97 gkvlaelpLpiaGlmSdepaeevaekleeleaalkelgv..kledpfmtlsflalpviPelkltdkGlvdvkk 167
                     g++la++++piaG++Sd pa+e+a++++el+++ +++    +  ++f ++   +l++    +ltd Gl d+ +
      CTQ29036.1 505 GEILAHVAMPIAGMLSDLPAAELARQFRELRDLSSQVADwePPYRVFKAIEGTCLACNAGPHLTDLGLTDGGS 577
                     *******************************9988855458999*************************9865 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.4   4.3e-24   1.9e-20       2     342 ..      73     355 ..      72     380 .. 0.82

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 4.3e-24
                   EEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEESSEGGS.......GCC CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilggkvsldr.......gsa 91 
                   + PGl D+HvHle+s+l          p+++a+ +l +g+++ + ++++ ++  g +   g++   +a+++lpl++ + +++ ++++        ++
    CTQ29036.1  73 LSPGLMDTHVHLESSHL---------PPERYAEIVLTQGTTAVFWDPHELANVLGVA---GVRYAVDASRHLPLQVMVAAPSSVPSTpglemsgADF 157
                   78**************9.........9*****************************8...9****************************99877666 PP

                   CSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE..TSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTT CS
  Amidohydro_1  92 etskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHa..letkgevedaeaafgetiehgthlevaeslglld 186
                      + ++    +++          +v   ++ h+  + s e ++e++++    ++ +  Ha  l+    +++  a+  +++e ++  + +e+     
    CTQ29036.1 158 AGAEMETMLGWPEV---------RGVAEVMDMHGVLHGS-ERMQEIVQAGLNSGKLIEGHArgLSGADLQAYLAAGVTSDHELTSADDALEK----- 239
                   66666666666666.........3555677888888877.9********************9777777777777777777777777777776..... PP

                   HCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHH.TSCEEEEEECT......TSSCCGGHHHHHHHHHHHHHHCCTTTT CS
  Amidohydro_1 187 eiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkalde.GvkvglgtDga......asgnslnlleelrlalklqrgllyede 276
                        l  g +++                     s  +l +++ a+ k l   +  ++++tD++       +g  + l   l l++           
    CTQ29036.1 240 -----LRAGLTIEIRG------------------SHPYLLPDIVAALKTLPHlSSQITVCTDDVppdillEKGGIIAL---LNLLI----------- 299
                   .....88888888662..................2235888888888888888*********8888887744444444...88888........... PP

                   HCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEETTE CS
  Amidohydro_1 277 egglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkvivkGk 342
                   e+gl++ +alr+aT+n+A+ l + +++G i++G++ADlvv+d           ++   + v+v+Gk
    CTQ29036.1 300 EHGLPAVDALRFATLNAAIRLQR-HDLGLIAAGRRADLVVFDS---------LEKLVAREVYVGGK 355
                   899*******************9.8****************54.........44444444444444 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0001      0.45       2      31 ..      65      89 ..      64     103 .. 0.80
   2 !   21.7   0.1   2.7e-08   0.00012     376     469 ..     280     354 ..     192     358 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0001
  Amidohydro_3  2 viDakGrlvlPGFvDsHtHlagggvnlrll 31
                  v  + G+++ PG+ D H Hl +      +l
    CTQ29036.1 65 VRSLAGGYLSPGLMDTHVHLESS-----HL 89
                  66799**************6544.....34 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 2.7e-08
  Amidohydro_3 376 apvgpfdpwprigaavmrktrrggevlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelaearvrltvvdG 469
                    p +++ +  +i+a+++         l +++ l+  +al+  T ++A +l  +d  G +++G +ADlvv+d  + ++         +r+++v+G
    CTQ29036.1 280 VPPDILLEKGGIIALLN---------LLIEHGLPAVDALRFATLNAAIRLQRHDL-GLIAAGRRADLVVFD-SLEKLV--------AREVYVGG 354
                   66666666666666664.........4578899999******************8.**************8.233332........45555555 PP

>> Alpha_L_fucos  Alpha-L-fucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   9.9e-05      0.44      82     117 ..      94     131 ..      77     132 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 9.9e-05
                    HHG..GGGG---TT--HHHHHHHHHHHT-SEEEEEEE- CS
  Alpha_L_fucos  82 Ykd..lakeFkaekFdpeewaklfkaaGakYvvltakH 117
                    Y++  l +  +a  +dp+e+a+++  aG++Y+v  ++H
     CTQ29036.1  94 YAEivLTQGTTAVFWDPHELANVLGVAGVRYAVDASRH 131
                    55533446667889********************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4463.27
//
Query:       CTQ29037.1  [L=447]
Description: Inorganic anion transporter, sulfate permease (SulP) family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-29  101.8  40.5    4.3e-29  101.4  40.5    1.2  1  Xan_ur_permease  Permease family


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4  40.5   2.4e-33   4.3e-29       3     373 ..      31     392 ..      29     423 .. 0.92

  Alignments for each domain:
  == domain 1  score: 101.4 bits;  conditional E-value: 2.4e-33
                      HHHHHHHHHHHHHHHHHHHHHTTTS-.........H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG-....HHHHHHHHHHHH CS
  Xan_ur_permease   3 llllglQhllamfaalvvvPllvgdalglaeelrqlisatllasGiatllqllifgirlpillgssfafvtalmialGsaedieialagllgal 96 
                      + l+g++ +la  + lvv+P l++   g  ++   +++ t+l+  +++ll++++++++  +  g+++  +   ++ +Gs    +i+ ++ lg  
       CTQ29037.1  31 ECLAGITGFLAAAYLLVVIPGLLAIG-G--MDKGAATTGTILVFVVGSLLMAFYANLPFIVGPGIGGSVLV-GVTLAGS---EGIGWQTGLGIA 117
                      6799*******************999.3..444589999****************************9887.7888887...89********** PP

                      HHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHHHHHHHHHSSSTTTTTHHHHHH CS
  Xan_ur_permease  97 lvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaavegltvvslkllllavvvllvilllsvflkglfsqlpiLig 190
                        +g+lf+l+ ++glr+ ++r  p  +  +++  iGl++a  +++++g++ a+++ + ++++++l+ +  v l++l l++ l+  ++ ++iL++
       CTQ29037.1 118 CWSGILFFLLTRFGLREVVTRSVPQSIKLGLTASIGLFVAVLGFRNAGLVLANAKTNALMLGDFLAPGALVALCGLFLAIALQARKVPGAILWA 211
                      **************************************************9998888************************************* PP

                      HHHHHHHHHHHHHTTSSHHHHS-SS-----------HH...H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TII..IIIHHHHHHHHHHHHH CS
  Xan_ur_permease 191 iiagwllalfmgivnlspevseapwfqlpsplkfgtpl.fnlgliltvlavalvavvesvGdiravakvvgrslkp..kpdlrralladGlatl 281
                      i++++l+ + +g+++l   + +ap+   p +++      +n++ ++ +++++   +++++G+  av++ +g+ +++  +p+++r +++d++a  
       CTQ29037.1 212 ILCATLVGIPFGVTKLPTHFIDAPHSLAPVLGQVDLLGaLNIAFLPFLFVFFASEFFSTMGTTLAVGGEAGLLDEEgnMPQINRPFMVDSIAAA 305
                      *****************************9999988777999666666666666799**************9999999**************** PP

                      HHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SHHHHHHH CS
  Xan_ur_permease 282 lsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdldsarnlliv 373
                      l+  +G +++t+ +e+ +  +++    +++++ta   ++++ l+  +++ + +IP+ + ++++l++ g+ ++sg+++++ +++++   +l++
       CTQ29037.1 306 LGPWVGIPAATALIESSAAAEAG----GKTGLTALSAAVMFLLMLLFTPVALMIPKEA-TAPALILIGLNMFSGLRKVDLANFTDGLPVLMM 392
                      ***********************....*******************************.************************966555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3623.80
//
Query:       CTQ29038.1  [L=299]
Description: LysR family transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-39  133.5   2.8    6.3e-39  133.5   2.8    1.6  2  LysR_substrate  LysR substrate binding domain
    1.2e-16   60.4   1.6    3.2e-16   59.0   1.6    1.8  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.18   1.6e+03     118     143 ..      18      44 ..       4      46 .. 0.76
   2 !  133.5   2.8     7e-43   6.3e-39       2     208 ..      88     294 ..      87     295 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.18
                     HHHHHHHCTTEEC.EEEEEESSHHHHH CS
  LysR_substrate 118 lledalreaglkp.rvalevnsleall 143
                     ++ da reag++p +v+  +  le++l
      CTQ29038.1  18 SFSDAAREAGQQPaQVSAAIKRLETIL 44 
                     466788888888888888888888887 PP

  == domain 2  score: 133.5 bits;  conditional E-value: 7e-43
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEE.EEEEEEEEETTSGGGG.SS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLa.eeplvlvaspdhpLar.ge 94 
                     ++ rg L i++p++l+r ll  l ++fr+r+P ++l+l  +d  +l d  ++  +D+a+r+g+ +d+++++ p+a e+++vlvasp+  +ar ge
      CTQ29038.1  88 DEVRGMLQIAVPSDLGRNLLLTLFRDFRQRHPALRLRLLFSD--QLTDVFKDP-VDVAFRYGNNDDASFISLPVApENRRVLVASPEW-IARhGE 178
                     6899**************************************..****99999.*********************999*********9.9999** PP

                     SECGGGGCTSEEEEE.STTST.HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEE CS
  LysR_substrate  95 pvsledLadeplill.eegsg.lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylv 186
                     p +le+L +++ + +  +g +  r++l      +++k+ +++ ++++e +++l+ aG Gia+ + + v+d+l++grl+ + lp ++    +l l+
      CTQ29038.1 179 PQTLEELSQHNALIYiLRGRPfDRWSLSLDGVVQQQKVSGTVMSDDAEVIRRLAIAGEGIAYKSMLDVSDDLRAGRLR-RLLPRYQGDvVPLNLI 272
                     **************966666677777777777779999****************************************.**************** PP

                     EETTCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 187 yrkgrelspavrafidflreal 208
                     ++++++ls+avr + + +++++
      CTQ29038.1 273 CPHRKQLSAAVRLLYEEVKSHC 294
                     ****************999887 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   1.6   3.5e-20   3.2e-16       1      60 []       4      63 ..       4      63 .. 0.98

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 3.5e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l++l lfv  a  gsf+ AA+e g  ++ vs++ikrLE  l+ +Lf R++r+lrLT++Ge
  CTQ29038.1  4 LEDLTLFVRAAALGSFSDAAREAGQQPAQVSAAIKRLETILNIRLFARSTRSLRLTPEGE 63
                689********************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2493.61
//
Query:       CTQ29039.1  [L=105]
Description: hypothetical protein CH1034_250167 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-19   67.5   0.1    1.1e-18   67.0   0.1    1.3  1  RcnB      Nickel/cobalt transporter regulator


Domain annotation for each model (and alignments):
>> RcnB  Nickel/cobalt transporter regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.1   6.3e-23   1.1e-18       1      50 [.      45      94 ..      45      95 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 6.3e-23
        RcnB  1 GdrlppeyrgrryvvdDwrryhLpaPprGyrWvriggdyvLvaiatGvIa 50
                Gd +p+ y ++ y++++w++++LpaP +G++W+++gg+yvL++++ G+I+
  CTQ29039.1 45 GDTVPAMYLTPEYNIKQWQQRNLPAPDAGSHWTYMGGNYVLITDTEGKIL 94
                9************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 881.28
//
Query:       CTQ29040.1  [L=154]
Description: Acetyltransferase, GNAT family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-16   59.2   0.0    5.3e-16   58.8   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    2.3e-15   56.8   0.0      3e-15   56.5   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    7.3e-15   55.0   0.0    9.6e-15   54.6   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.085   13.0   0.1       0.14   12.3   0.1    1.4  1  Acetyltransf_6   Acetyltransferase (GNAT) domain
        0.2   11.8   0.0       0.43   10.7   0.0    1.6  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   1.5e-19   5.3e-16       2      75 ..      58     134 ..      57     135 .. 0.80

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 1.5e-19
                     TEEEEEEEETTEEEEEEEEEEESTCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEEEEEEEE.THHHHHHHHHHTTEE CS
  Acetyltransf_7   2 kgevfVaeddgkivGfialslldaeitrlaVdpeyrgkGiGraLleaae.....kgiileqlel.naekaikfYeklGFe 75 
                     +++++Vae dg++vGf+a++  d  +++l+Vdp+++gk iG+aLl+ +e     +g +l+   l ++++a++fY+++G++
      CTQ29040.1  58 DEQLWVAECDGQPVGFAAVWTADNFLHHLFVDPDWQGKHIGSALLAQVErtftaSG-TLK--CLmENKNALRFYQRHGWI 134
                     5789******************988889*****************96333455555.223..22344589********85 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   8.4e-19     3e-15      12     117 .]      37     133 ..      25     133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 8.4e-19
                     THHHHHHHHHHHHHHHHHSTTC.EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTE CS
  Acetyltransf_1  12 ffppnedaseeefeesfsleae.gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedn 105
                       +++  a  ++ e++   +a+  l+vae dg+++Gf+ ++  ++      +++ l+V+p+++gk +GsaLl ++e+ +   g     l + + n
      CTQ29040.1  37 LSWTWLPAAAWRLEDFDAATADeQLWVAECDGQPVGFAAVWTADN------FLHHLFVDPDWQGKHIGSALLAQVERTFTASGT----LKCLMEN 121
                     34788889999988887777777**********************......**************************8888877....344688* PP

                     HHHHHHHHHTTE CS
  Acetyltransf_1 106 daairlYeklGF 117
                     + a r+Y+++G+
      CTQ29040.1 122 KNALRFYQRHGW 133
                     *******99996 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   2.7e-18   9.6e-15      28     107 ..      56     134 ..      45     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 2.7e-18
  Acetyltransf_10  28 egealllvaeeggkivGviel.rdgshisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnasp.yavpfYeklGFk 107
                      + + +l+vae++g++vG++++ + ++ +++lfVdp+++g+ ig+aLl +ve+ +     + +l++   + +a +fY+++G+ 
       CTQ29040.1  56 TADEQLWVAECDGQPVGFAAVwTADNFLHHLFVDPDWQGKHIGSALLAQVERTFTAS--G-TLKCLMENkNALRFYQRHGWI 134
                      57889************************************************9544..3.555555555**********95 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.9e-05      0.14      72     119 ..      60     105 ..      31     116 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.9e-05
  Acetyltransf_6  72 rlyvlrldgrpvAvalglrsgdrlyywlggydpelaklspgllllwel 119
                     +l+v+++dg+pv++a++  +++ l+ +++  dp++ + ++g  ll+++
      CTQ29040.1  60 QLWVAECDGQPVGFAAVWTADNFLHHLFV--DPDWQGKHIGSALLAQV 105
                     69***********************9985..88899889999998876 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00012      0.43      26      50 ..      82     106 ..      60     116 .. 0.77
   2 ?   -2.7   0.0       1.9   6.8e+03      47      61 ..     122     136 ..     121     138 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
  Acetyltransf_CG  26 dfthTeVpeelrGkGiAkkLvkaal 50 
                       ++h +V++  +Gk i+++L  ++ 
       CTQ29040.1  82 FLHHLFVDPDWQGKHIGSALLAQVE 106
                      579*****************99875 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.9
  Acetyltransf_CG  47 kaalddareeglkvv 61 
                      k al + +++g+ + 
       CTQ29040.1 122 KNALRFYQRHGWIIE 136
                      568889999999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1289.34
//
Query:       CTQ29041.1  [L=369]
Description: antiporter inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-100  336.1   0.2   1.4e-100  335.8   0.2    1.1  1  ParA            NUBPL iron-transfer P-loop NTPase
      3e-12   46.7   0.0    7.3e-12   45.5   0.0    1.7  1  CbiA            CobQ/CobB/MinD/ParA nucleotide binding domain
    3.1e-10   40.3   0.5    1.2e-08   35.1   0.1    2.2  2  AAA_31          AAA domain
    4.1e-08   32.8   0.0    8.6e-08   31.8   0.0    1.5  1  MipZ            ATPase MipZ
    7.6e-08   32.1   0.0    0.00036   20.1   0.0    2.3  2  Fer4_NifH       4Fe-4S iron sulfur cluster binding proteins, 
    0.00075   19.6   0.0     0.0018   18.4   0.0    1.7  1  FeS_assembly_P  Iron-sulfur cluster assembly protein
    0.00077   18.7   3.1     0.0019   17.4   0.5    2.4  3  ArsA_ATPase     Anion-transporting ATPase
     0.0054   16.0   0.1      0.011   15.0   0.1    1.5  1  VirC1           VirC1 protein
  ------ inclusion threshold ------
      0.025   14.2   0.1      0.051   13.2   0.1    1.5  1  AAA_25          AAA domain
      0.034   13.6   0.4       0.46    9.9   0.2    2.2  2  CBP_BcsQ        Cellulose biosynthesis protein BcsQ
      0.074   12.0   0.2       0.11   11.4   0.2    1.2  1  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
      0.096   12.5   0.0       0.17   11.6   0.0    1.4  1  CLP1_P          mRNA cleavage and polyadenylation factor CLP1
       0.16   11.8   2.1         12    5.7   0.1    2.6  2  AAA_26          AAA domain


Domain annotation for each model (and alignments):
>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.8   0.2    1e-103  1.4e-100       2     245 ..     106     349 ..     105     350 .. 0.98

  Alignments for each domain:
  == domain 1  score: 335.8 bits;  conditional E-value: 1e-103
        ParA   2 vkkviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeekpeqs.ekkliPveakgikvmSigfllesedeavvwrGpmkska 99 
                 vk++ia++SgKGGVGKS++avnlAlaLa++g+kvg+lDaDiyGpsip++lg+e+++p++   +++ P++++g+ + Sig+l++ +d+a+vwrGpm+ska
  CTQ29041.1 106 VKNIIAISSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDSRPTSPdGTHMAPIMKYGLATNSIGYLVT-DDNAMVWRGPMASKA 203
                 9******************************************************99998556799****************9.9************** PP

        ParA 100 ikqllkdvewgelDyLiiDlPPGtgDeqltvaqklplagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteifgkgggekla 198
                 + q+l+++ w +lDyL++D+PPGtgD+qlt+aq++p++gav+Vttpq++al+d+kk+i mf+kv+v+vlG+veNms+++c++cg+++ ifg+gg++kla
  CTQ29041.1 204 LMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAQKLA 302
                 *************************************************************************************************** PP

        ParA 199 eelgvpllgeipldpeireasdegkplvlkepeseaakaleeiaekv 245
                 e+++++llg++pl+ ++re  d+g+p+v+++p+se +++++++a +v
  CTQ29041.1 303 EKYHTQLLGQLPLHITLREDLDNGTPTVVARPDSEFTDIYRQLAGRV 349
                 ******************************************99876 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   5.3e-15   7.3e-12       1     118 [.     110     319 ..     110     330 .. 0.81

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 5.3e-15
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 iai s+kGGvGK+++a+nLa ala +g +V  +DaD  +++  +  g e  + +                                             
  CTQ29041.1 110 IAISSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDSRPTspdgthmapimkyglatnsigylvtddnamvwrgpmaskalmqml 208
                 89***************************************99666666666669******************************************** PP

                 ...............................................CCHCCCHHHHHHCHCHHHH.....EEEEEEEEESS...-TTCHHHHHHHHHH CS
                 ...............................................xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ...............................................dlkrllellealgkkkall...lkiagvvlnrvdgeneetllkealeelkqr 103
                                                                d+k+++ ++e++  +  +l    ++ + +     g +e      + ++l ++
  CTQ29041.1 209 qetlwpdldylvldmppgtgdiqltlaqnipvtgavvvttpqdialiDAKKGIVMFEKVEVP--VLgivENMSMHICSNC-GHHEPIFGTGGAQKLAEK 304
                 ***********************************************999999999999966..3334333333333333.233455555555555555 PP

                 CTS-EEEEEE--CCH CS
                 xxxxxxxxxxxxxxx RF
        CbiA 104 ygvpvlgviprdeav 118
                 y+ ++lg +p    +
  CTQ29041.1 305 YHTQLLGQLPLHITL 319
                 566666666655555 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.1   8.6e-12   1.2e-08       2      40 ..     108     146 ..     107     160 .. 0.94
   2 ?    3.3   0.0      0.05        69     108     132 ..     206     230 ..     184     270 .. 0.68

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 8.6e-12
      AAA_31   2 kvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDp 40 
                  +Iai+  KGGvGK+ t+vnla ala +g kv + D+D 
  CTQ29041.1 108 NIIAISSGKGGVGKSSTAVNLALALAAEGAKVGILDADI 146
                 59***********************************95 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.05
      AAA_31 108 kellekvkdeYDyiiiDcpPsLgll 132
                 + l e++  + Dy ++D+pP  g +
  CTQ29041.1 206 QMLQETLWPDLDYLVLDMPPGTGDI 230
                 33345667789*********76644 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   6.2e-11   8.6e-08       2     118 ..     109     235 ..     108     258 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 6.2e-11
                 EEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHHHH...HHHHHHHHT--......----EEE-SSS-HHHHTTS-HHHHHHHHHH CS
        MipZ   2 vivlgnekGGsGksttavhvavaLlkkGarvaaidldlrqrtlarylen...raataerkgls......Lplpealalseaeeaeveeeeeaevaelee 91 
                 +i ++  kGG Gks tav +a aL+++Ga+v+ +d d+   ++   l+    r  + + ++++      L++ ++  l + ++a v ++  a+ a ++ 
  CTQ29041.1 109 IIAISSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAedsRPTSPDGTHMApimkygLATNSIGYLVTDDNAMVWRGPMASKALMQM 207
                 6889999********************************999999886511154444444443222222777777778888888888888888788888 PP

                 HHHHHHHH-SEEEEE--.SS--HHHHHH CS
        MipZ  92 lvadleaeldfividtP.Gsdsalsrla 118
                 l + l  +ld++v+d P G+ +    la
  CTQ29041.1 208 LQETLWPDLDYLVLDMPpGTGDIQLTLA 235
                 888999999*****98635554444444 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.6e-07   0.00036       4      41 ..     111     149 ..     108     162 .. 0.80
   2 !   10.0   0.0    0.0003      0.41     192     256 ..     297     364 ..     205     369 .] 0.86

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.6e-07
   Fer4_NifH   4 ai.yGkGGiGksttsqnlsaalaemgkkvlivGCDPkaD 41 
                 ai  GkGG+Gks t+ nl+ ala+ g kv i+  D    
  CTQ29041.1 111 AIsSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGP 149
                 55259************************9888776555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0003
   Fer4_NifH 192 liekfaeelgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrelarkilenk...klviPkpl 256
                  ++k+ae+  t++l  +P++ ++r+   +   ++   p+se ++ yr+la +++ +      viP ++
  CTQ29041.1 297 GAQKLAEKYHTQLLGQLPLHITLREDLDNGTPTVVARPDSEFTDIYRQLAGRVAAQMywqGEVIPGEI 364
                 5799*******************99988888888999****************987532245666665 PP

>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.3e-06    0.0018       2      67 ..      15      80 ..      14      85 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.3e-06
                    HHHHHHHTT-B-TTTSSBCCCCT---EEEE-T-EEEEEE--SSTT-TTHHHHHHHHHHHHC.STT- CS
  FeS_assembly_P  2 eavlaaLrtVtDPelgvdlvslglvreidieggkVsvditltypacslaeairadaeaalralpgv 67
                    + v   L++ + P l  +l++l++++ ++  +++V++ +++++   s++ea+++++ a l  + g+
      CTQ29041.1 15 AMVAGTLANFQHPTLKHNLTALKALHHVAWLDDTVHIELQMPFVWSSAFEALKDQCSAELLRITGA 80
                    6788999999**************************************************999994 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.5   1.4e-06    0.0019       6      38 ..     113     145 ..     108     147 .. 0.88
   2 ?   -0.4   0.0      0.37   5.1e+02     112     136 ..     203     228 ..     199     238 .. 0.80
   3 ?   -1.1   0.0       0.6   8.2e+02     207     244 ..     241     278 ..     231     309 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.4e-06
                  EEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase   6 vgGKGGVGKttvsaatavklsekgkkvllistD 38 
                   +GKGGVGK++ +  +a+ l+ +g kv ++  D
   CTQ29041.1 113 SSGKGGVGKSSTAVNLALALAAEGAKVGILDAD 145
                  58************************9887665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.37
                  HHHHHHHHHHCSSSSEEEEESBS.CC CS
  ArsA_ATPase 112 sfeellkyvkeeeydvvvlDtaP.TG 136
                  +++++l+++   + d++vlD +P TG
   CTQ29041.1 203 ALMQMLQETLWPDLDYLVLDMPPgTG 228
                  67788888888999********9455 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.6
                  EEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEE CS
  ArsA_ATPase 207 tsfrlVvipEklslkEteRaikeLkkygikvdavivNk 244
                  t  ++V++p  ++l + ++ i  ++k+++ v  ++ N 
   CTQ29041.1 241 TGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENM 278
                  7778999********************99999998885 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   8.1e-06     0.011       2      39 ..     108     145 ..     107     151 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.1e-06
       VirC1   2 klitfcslkGGaGkttalmglcsalasdgkrvalfead 39 
                 ++i+++s kGG Gk+++ + l  ala++g +v++++ad
  CTQ29041.1 108 NIIAISSGKGGVGKSSTAVNLALALAAEGAKVGILDAD 145
                 68999********************************9 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.7e-05     0.051      32      61 ..     107     137 ..      84     162 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.7e-05
      AAA_25  32 agelallaGapgtGKttlaldlalava.tGk 61 
                 ++ +a+  G +g+GK+  a++lala+a +G 
  CTQ29041.1 107 KNIIAISSGKGGVGKSSTAVNLALALAaEGA 137
                 56678999******************97665 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00033      0.46       3      38 ..     109     144 ..     107     147 .. 0.92
   2 ?    1.3   0.0      0.14   1.9e+02     103     141 ..     202     241 ..     175     256 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00033
    CBP_BcsQ   3 vlalqGvRGGvGttsllaaLawalhelgesvlviDl 38 
                 ++a++  +GGvG++s ++ La al + g +v ++D+
  CTQ29041.1 109 IIAISSGKGGVGKSSTAVNLALALAAEGAKVGILDA 144
                 78888899***********************99996 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.14
    CBP_BcsQ 103 eallaal.kelkeqyrwillDlpagasaltrellaladlv 141
                 +al++ l ++l  + ++++lD+p g+ +++ +l ++  ++
  CTQ29041.1 202 KALMQMLqETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVT 241
                 444444405566999*********9999888777654443 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   8.2e-05      0.11      35      66 ..     114     145 ..      83     157 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.2e-05
                 EE-TTSSHHHHHHHHHHHHHCTT--EEEEEE- CS
        MeaB  35 tGvPGaGkstlvealglelrrrGkrvavlavD 66 
                  G  G+Gks +  +l+l l+++G +v++l  D
  CTQ29041.1 114 SGKGGVGKSSTAVNLALALAAEGAKVGILDAD 145
                 5899************************9887 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00013      0.17       1      45 [.     115     157 ..     115     180 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvGqseispPgtisl 45 
                 G+  +GKS+ a +L+  ++ +g k+ ++D+D+  ++  +P ++++
  CTQ29041.1 115 GKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPS--IPTMLGA 157
                 66789***************************9887..5666665 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2     0.015        21       4      33 ..     111     140 ..     108     142 .. 0.88
   2 ?    5.7   0.1    0.0086        12     132     166 ..     244     278 ..     224     322 .. 0.45

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.015
      AAA_26   4 fvtgtdtgvGKTvvslgLvralkrkgvkvg 33 
                  +++   gvGK++++  L+ al ++g+kvg
  CTQ29041.1 111 AISSGKGGVGKSSTAVNLALALAAEGAKVG 140
                 57777889********************98 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0086
      AAA_26 132 ilVargglgtinqllltiealrqknvrvlGvilNk 166
                 ++V+++++ ++ ++   i ++ + +v+vlG++ N 
  CTQ29041.1 244 VVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENM 278
                 33333333344444444444444555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2757.96
//
Query:       CTQ29042.1  [L=680]
Description: methionyl-tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.6e-167  555.2   0.1   8.2e-167  554.9   0.1    1.1  1  tRNA-synt_1g  tRNA synthetases class I (M)
    1.2e-21   76.6   0.0      3e-21   75.3   0.0    1.7  2  tRNA_bind     Putative tRNA binding domain
    2.8e-17   62.2   1.0    1.5e-11   43.3   0.1    2.6  3  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
    8.6e-14   51.6   0.6    5.9e-06   25.8   0.0    2.4  2  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
    3.2e-07   29.6   0.0    0.00032   19.7   0.0    2.3  2  tRNA-synt_1f  tRNA synthetases class I (K)
     0.0028   17.6   0.9     0.0037   17.2   0.1    1.7  2  Anticodon_1   Anticodon-binding domain of tRNA


Domain annotation for each model (and alignments):
>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  554.9   0.1  2.7e-170  8.2e-167       1     390 [.      11     400 ..      11     401 .. 0.99

  Alignments for each domain:
  == domain 1  score: 554.9 bits;  conditional E-value: 2.7e-170
                   EEEEE--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEEETTSHHHH CS
  tRNA-synt_1g   1 vlvttalpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkygrttseehk 97 
                   +lvt+alpYang++HlGh+le+i+aD+++Ry+r+rg+ev f+c++D+hGtpi+lkA++ g+tpe+++ ++++e++++f+ ++is+d+y++t+s+e++
    CTQ29042.1  11 ILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFDISYDNYHSTHSDENR 107
                   69*********************************************************************************************** PP

                   HHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-EE........-TTS-EE-TTSSB-E................EEE.EEEEEE-GGGGHHH CS
  tRNA-synt_1g  98 elvqeifkklkekgliyekeieqlycpkderflpdryvegtCPkckseeargdqceecgkkleptelinpksaisgskpevketehlffklskfekk 194
                   el++ i+++lke+g+i++++i+qly+p++++flpdr+v+gtCPkcks +++gd+ce cg++++pteli+pks++sg++p+++++eh+ff+l++f+++
    CTQ29042.1 108 ELSELIYTRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIDPKSVVSGATPVMRDSEHFFFDLPSFSEM 204
                   ************************************************************************************************* PP

                   HHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SS.S-EETTECCEEE-HHHHHHHHHHHTTTTT-...TTSGGGG.G--S......EEEEEG CS
  tRNA-synt_1g 195 lkewieeeekeleenvkkivkewlkegLkdlaisrdldw.GipvPgaekkvlYVWldAligYisatkelakkkgeeekwkeyWakdkevelvhfigk 290
                   l++w+++    l+e+v ++++ew+++gL++++isrd+++ G+++P+a++k++YVWldA+igY+ ++k+l++k+g+  +++eyW+kd+ +el+hfigk
    CTQ29042.1 205 LQAWTRSGA--LQEQVANKMQEWFESGLQQWDISRDAPYfGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDTTSFDEYWKKDSTAELYHFIGK 299
                   *****5555..9************************************************************************************* PP

                   GGHHHHHTHHHHHHHHTT----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHH.HS-TTS-EEE-HHHHHHHHHHHCCCHHHHH CS
  tRNA-synt_1g 291 diikFHtifwPaillgaelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaa.eapekkDldfswedfvervNseLadklgnl 386
                   di++FH++fwPa+l+g+++++p+++++h+y+tv+g+K+SkSrg+++ka+++l+++dad lRYy++a  +++ +D+d+++edfv+rvN+++++k++nl
    CTQ29042.1 300 DIVYFHSLFWPAMLEGSNFRKPTNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAkLSSRIDDIDLNLEDFVQRVNADIVNKVVNL 396
                   ****************************************************************99788999************************* PP

                   HHHH CS
  tRNA-synt_1g 387 vnRv 390
                   ++R+
    CTQ29042.1 397 ASRN 400
                   ***7 PP

>> tRNA_bind  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       5.7   1.7e+04      31      42 ..     178     189 ..     176     192 .. 0.79
   2 !   75.3   0.0   9.9e-25     3e-21       1      95 [.     584     677 ..     584     678 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 5.7
                 EEEEESCTTTST CS
   tRNA_bind  31 rqivsgaknvye 42 
                 + +vsga+ v+ 
  CTQ29042.1 178 KSVVSGATPVMR 189
                 689****99876 PP

  == domain 2  score: 75.3 bits;  conditional E-value: 9.9e-25
                 EEEEEEEEEEEETTSSTEEEEEEEESSSSEEEEEESCTTTST.HHHHTTEEEEEETTSESEEETTEEESSEE-EEECCESSCEEEEEESST--TTC CS
   tRNA_bind   1 lrvGkvleaeehpnadkLlvlkvdvGeeeprqivsgaknvye.peelvakkvvvvanlkpkklrGveSeGMilsaeeldekevgilelpadveaGe 95 
                 lrv+ + +ae ++++dkLl+l++d+G+e+ r+++sg+++ y+ p+ l+++  v+vanl p+k+r+  SeGM+++a    +k+  +l++++ +++G+
  CTQ29042.1 584 LRVALIENAEFVEGSDKLLRLTLDLGGEK-RNVFSGIRSAYPdPQPLIGRLTVMVANLAPRKMRFGISEGMVMAAGP-GGKDIFLLSPDDGAKPGQ 677
                 79***************************.**********************************************7.99***************8 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.1     5e-15   1.5e-11      21     101 ..       7      86 ..       1     112 [. 0.86
   2 ?   -2.2   0.1       0.3   8.9e+02     482     497 ..     217     232 ..     202     248 .. 0.59
   3 !   17.0   0.0   4.5e-07    0.0014     548     600 ..     322     375 ..     284     377 .. 0.84

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 5e-15
  tRNA-synt_1  21 ekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgreefr 101
                   +k+  ++   Py++Gs+H+Gh+l+++  d+ +ry+rm+G+ev++    D +G +i  k  ++lg++ ++   ++++e+ +
   CTQ29042.1   7 VAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA-QQLGITPEQMIGEMSQEHQT 86 
                  56677777888*********************************************9986.56899999999999988655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.3
  tRNA-synt_1 482 kdedvlDvWFsSgswp 497
                  ++ + +  WF+Sg+ +
   CTQ29042.1 217 QVANKMQEWFESGLQQ 232
                  4445555555555543 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 4.5e-07
  tRNA-synt_1 548 kevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltli..lsdvgrdin 600
                  ++++vhg v+  +G KmSKs g  i+ ++ +++  ad+lR++    ls+   di+
   CTQ29042.1 322 TNLFVHGYVT-VNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTakLSSRIDDID 375
                  58999**997.57***************************997656666666665 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   9.9e-09     3e-05      13     120 ..      14     122 ..       3     136 .. 0.87
   2 !   25.8   0.0     2e-09   5.9e-06     211     282 ..     295     365 ..     290     383 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 9.9e-09
                   EEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SB--BGGGGHHHHH CS
  tRNA-synt_1e  13 YvCGptvydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvkelaekfieefkkdleaLnvlkptleprvsekvdeii 109
                    +  p +   +hlGh  + +  D+  r+ +++g++v+f+         i+++a++ + + +++  ++ +e+++d++  ++   ++++  s++  e+ 
    CTQ29042.1  14 TCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFDISYDNYHSTHSDENRELS 110
                   44556677889****************************987777789************************************************* PP

                   HHH.HHHHHTTS CS
  tRNA-synt_1e 110 elv.ekliekgy 120
                   el+  +l e+g+
    CTQ29042.1 111 ELIyTRLKENGF 122
                   *99446777776 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 2e-09
                   EEEEGGGTTTHHHHHHHHHHHHSSS--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHS CS
  tRNA-synt_1e 211 hsGGiDLafPhhenelaqseaafdkqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRlllls 282
                   h  G+D+++ h     a+ e    ++ ++ f+h g+++++g kmsks + fi+    l++fd+  lR++ + 
    CTQ29042.1 295 HFIGKDIVYFHSLFWPAMLEGSNFRKPTNLFVH-GYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTA 365
                   556777777777777788887777889999999.9*********************************9754 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00065       1.9      34      69 ..      21      56 ..       8      60 .. 0.91
   2 !   19.7   0.0   1.1e-07   0.00032     264     322 ..     319     377 ..     311     391 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00065
  tRNA-synt_1f 34 SGliHiGnlrevltadlvaralrkrgeevrlilisD 69
                   G+iH+G + e ++ad+ +r  r rg+ev++i+  D
    CTQ29042.1 21 NGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADD 56
                  59******************************9766 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 1.1e-07
  tRNA-synt_1f 264 eaPekv.vYelillkggekmssSkGnvltledwlevaepevlrflilrrkPkkakkldld 322
                   ++P ++ v  +++++g  kms+S+G+++  + wl+    ++lr+++  +   +  ++dl+
    CTQ29042.1 319 RKPTNLfVHGYVTVNGA-KMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLN 377
                   56665414455666555.****************************99555554455544 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       2.6   7.7e+03      16      42 ..     278     302 ..     278     306 .. 0.79
   2 !   17.2   0.1   1.2e-06    0.0037       4      87 ..     421     505 ..     418     557 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.6
  Anticodon_1  16 teayeeyrfnkaasalyeffwndlcdw 42 
                  t +++ey  ++  ++ly+f+ +d+  +
   CTQ29042.1 278 TTSFDEYWKKDSTAELYHFIGKDI--V 302
                  578999999999999999987776..5 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.2e-06
  Anticodon_1   4 ilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk...raaqevllevletllrllaPfmPfitEe 87 
                  + + + ++++++ ea ++ +f ka+++++ +   d+++ y++   p+   +++  +   +a+ ++ l +++ l+ +l P++P+++  
   CTQ29042.1 421 LYKTFTDAAESIGEAWDSREFGKAIREIMAL--ADVANRYVDEQAPWVVAKQEGRDadlQAICTMGLNMFRVLMTWLKPVLPQLAAR 505
                  56677889999*******************8..99************977666555553335588899***************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      721  (0.0402142); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 4855.65
//
Query:       CTQ29043.1  [L=156]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-46  155.6   0.1    1.3e-22   79.9   0.0    2.0  2  DUF1456   Protein of unknown function (DUF1456)


Domain annotation for each model (and alignments):
>> DUF1456  Protein of unknown function (DUF1456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   7.1e-27   1.3e-22       2      68 .]       4      70 ..       3      70 .. 0.99
   2 !   74.1   0.0   4.7e-25   8.5e-21       1      64 [.      86     149 ..      86     151 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 7.1e-27
     DUF1456  2 NdiLrrlRyaLdlkdedmveifklggvevtkeelsalLkkedeegyeeckdqvLesFLnGliikkRG 68
                NdiLr+lRy+L+++++dmv+i++l+ +e t +  + + +kedeeg++ c+d +L+ FLnGli+ kRG
  CTQ29043.1  4 NDILRSLRYTLKVNNNDMVRILALSAMESTAASFDTWTTKEDEEGFVRCPDIILSGFLNGLIYDKRG 70
                ******************************************************************9 PP

  == domain 2  score: 74.1 bits;  conditional E-value: 4.7e-25
     DUF1456   1 NNdiLrrlRyaLdlkdedmveifklggvevtkeelsalLkkedeegyeeckdqvLesFLnGlii 64 
                 NN +L++lR+a++lk++d+ +i+  + ++v+  e++a+++ +d+++y+ec+dq+L++FL Gl+ 
  CTQ29043.1  86 NNTVLKKLRIAFSLKTDDIQAIMSEQKYRVSVPEITAMMRSPDHKNYRECGDQFLRNFLRGLTQ 149
                 9*************************************************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1229.92
//
Query:       CTQ29044.1  [L=239]
Description: response regulator in two-component system with YehU [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-26   91.2   0.0    1.6e-25   89.4   0.0    1.8  2  Response_reg  Response regulator receiver domain
    7.1e-23   80.7   0.0    1.6e-22   79.6   0.0    1.6  1  LytTR         LytTr DNA-binding domain


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.0   1.8e-29   1.6e-25       1     111 [.       4     112 ..       4     113 .. 0.97
   2 ?   -0.6   0.0      0.16   1.4e+03      18      39 ..     116     137 ..     110     164 .. 0.73

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 1.8e-29
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   +livdD+pl+re+lr lle ++++e v+e+ ++ ea+  +++ ++d+++lDi+mp+++Gle++ ++  e+  + +++lta +e  +av+a++  a+d
    CTQ29044.1   4 ILIVDDEPLARENLRILLEtQRDIEIVGECGNAVEAIGAVHKLRPDVLFLDIQMPRISGLEMVGMLDPEH-RPYIVFLTAFDE--YAVKAFEEHAFD 97 
                   8******************99*********************************************9988.9*********97..************ PP

                   EEESSG-HHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkal 111
                   +l Kp++ ++L k l
    CTQ29044.1  98 YLLKPIEAARLEKTL 112
                   ***********9876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.16
                   HHHTTEEEEEEESSHHHHHHHH CS
  Response_reg  18 leeegyeevaeaedgkealell 39 
                    +e+++++v   +d+++ l+++
    CTQ29044.1 116 RQERNLQDVSLLDDAQQTLKYI 137
                   4567788888888888888887 PP

>> LytTR  LytTr DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   1.7e-26   1.6e-22       2      97 ..     144     237 ..     143     238 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 1.7e-26
       LytTR   2 riilvplddilyieaeekyvtlvte.neeylfrgtLkeleeklppdsffrvhRsylVnlkkikeidrdfngtleltlkngeklpvSrrylkelkell 97 
                 ri l++++d+ +++++ + +++    ++e  +++tL++le++   + ++r+hR+ylVn+++ kei+ ++ng++el ++ g+++pvSrrylk+lke++
  CTQ29044.1 144 RIWLLQMEDVAFVSSRMSGIYVTDReGKEGFTELTLRTLESR---TPLLRCHRQYLVNMAHLKEIRLEENGQAELLMRAGQTVPVSRRYLKSLKEAI 237
                 899***************999998889***************...67***********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 2126.05
//
Query:       CTQ29045.1  [L=574]
Description: sensory kinase in two-component system with YehT [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-58  197.5  14.0    1.7e-58  196.9  14.0    1.3  1  5TM-5TMR_LYT     5TMR of 5TMR-LYT
      4e-24   84.7   0.9    8.6e-24   83.7   0.9    1.6  1  His_kinase       Histidine kinase
    1.5e-08   35.1   0.0    4.7e-08   33.4   0.0    1.8  2  GAF_2            GAF domain
    1.4e-07   31.9   0.0    5.4e-07   30.0   0.0    1.9  2  GAF_3            GAF domain
    3.7e-05   24.2   0.0      0.004   17.7   0.0    2.5  1  HATPase_c        Histidine kinase-, DNA gyrase B-, and HSP90-
    4.3e-05   23.6   0.0    8.4e-05   22.6   0.0    1.5  1  SpoVT_C          Stage V sporulation protein T C-terminal, tr
    0.00086   19.4   7.6      0.002   18.2   7.6    1.6  1  ECF-ribofla_trS  ECF-type riboflavin transporter, S component
  ------ inclusion threshold ------
       0.16   12.0  13.1       0.57   10.3  13.1    1.8  1  ECF_trnsprt      ECF transporter, substrate-specific componen


Domain annotation for each model (and alignments):
>> 5TM-5TMR_LYT  5TMR of 5TMR-LYT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9  14.0   7.4e-62   1.7e-58       2     168 ..      40     208 ..      39     209 .. 0.98

  Alignments for each domain:
  == domain 1  score: 196.9 bits;  conditional E-value: 7.4e-62
  5TM-5TMR_LYT   2 plfrkllsekrktlksklllglifglfsilgtytgieiegaiantRaigvvvaGllgGplvGliagliaglhRyllgGftalacgistilagllaGl 98 
                   +lf +l+ + + +l +kll+++ f++f+i+gty+g++ie++iantRaig+v++GllgGp+vG ++gl++glhRy+lgG+tal+c++sti++gll+Gl
    CTQ29045.1  40 RLFIPLM-QVTVRLPHKLLCYVTFSIFCIMGTYFGLHIEDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSLGGMTALSCMVSTIVEGLLGGL 135
                   6899999.9999************************************************************************************* PP

  5TM-5TMR_LYT  99 ihrklkrrr...kkltvlvalligllveilqmllilllakpfdqalalvktialPmilvnslgtalflsilrd 168
                   +h+ l +r    k +++l+a +i++++e++qm++ill+a+pf++al+lv++ia Pm+++n++g+alf+ il d
    CTQ29045.1 136 VHSVLVKRGrpdKVFSPLTAGAITFVAELVQMMIILLIARPFQDALHLVQSIAAPMMVTNTVGAALFMRILLD 208
                   ******9999************************************************************975 PP

>> His_kinase  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.9   3.8e-27   8.6e-24       2      76 ..     383     458 ..     382     460 .. 0.92

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 3.8e-27
  His_kinase   2 elkaLqaqinPHFlfNtLnsiqslaeedpeeaeemlekLskllrysleseee.vtLeeElellesYlelqklrfgd 76 
                 e+k+L+aq+nPHFlfN+Ln++++++++d+++a ++++ Ls ++r++l++ +e vtL++E+e++++Yl+++k+rf+ 
  CTQ29045.1 383 EIKLLHAQVNPHFLFNALNTLKAVIRRDSDQAGQLVQYLSTFFRKNLKRPTEiVTLADEIEHVNAYLQIEKARFQA 458
                 89***********************99********************43355688*******************86 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.6   1.2e+04      89     106 ..     182     198 ..     175     208 .. 0.63
   2 !   33.4   0.0   2.1e-11   4.7e-08      20     134 ..     255     364 ..     244     367 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.6
                 TT--EEEEEE-TTS---E CS
       GAF_2  89 glrsflavPlisegrvvG 106
                 +l  ++a P++  + +vG
  CTQ29045.1 182 HLVQSIAAPMMVTN-TVG 198
                 34445777777754.665 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 2.1e-11
                 ..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B.---TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EEEEEE-T.TS---EEEEES..... CS
       GAF_2  20 aalgyillvdddgglrlaawgeaeeefgaaldr.plgeglvgealrtgrpvilndleedpdkkglpaghaglrsflavPlis.egrvvGvlnlyankpp 116
                  ++g +++ d d+   l+a+++   +++++l+  p++++ +++a++tg+ v+  d  e p++++ +  h +l+s+l++Pl++ + rv+G + ly +k +
  CTQ29045.1 255 LDIGAVAITDRDK---LLAFTGI--GDDHHLPGkPISSSYTQRAIETGEVVYA-DGNEVPYRCSIH-PHCKLGSTLVIPLRGeNQRVIGTIKLYEAKNR 346
                 5588888877555...4444444..444444442567889********98885.545558888887.9**************8899*******988888 PP

                 .--HHHHHHHHHHHHHHH CS
       GAF_2 117 afdeedlelLeelaeqia 134
                  f+  +++l e +a++++
  CTQ29045.1 347 LFSSINRTLGEGIAQLLS 364
                 8************99886 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.8     4e+03      75     100 ..     178     202 ..     171     214 .. 0.78
   2 !   30.0   0.0   2.4e-10   5.4e-07      18     127 ..     254     367 ..     244     369 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.8
       GAF_3  75 edglpdraalavPLvagrqviGvlal 100
                 +d+l++   +a+P+++  +++G  ++
  CTQ29045.1 178 QDALHLVQSIAAPMMV-TNTVGAALF 202
                 578999999999*999.666665555 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 2.4e-10
       GAF_3  18 gaevgalllldedgnklqvaagw.dgkpalsesldedsalarralssgevvsepsfae......edglpdraalavPLvagr.qviGvlalastkpraf 108
                  +++ga+ + d  ++kl +  g+ d ++ + + +   s+ ++ra+++gevv++ + +        + + +++ l++PL+ ++ +viG++ l+  k+r f
  CTQ29045.1 254 ELDIGAVAITD--RDKLLAFTGIgDDHHLPGKPIS--SSYTQRAIETGEVVYADGNEVpyrcsiHPHCKLGSTLVIPLRGENqRVIGTIKLYEAKNRLF 348
                 57888997766..5599999999888888866655..9999**********9988644333344466999**********99***************** PP

       GAF_3 109 daedlelleslArqiatai 127
                 ++ ++ l e +A++++ +i
  CTQ29045.1 349 SSINRTLGEGIAQLLSAQI 367
                 **************99888 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.8e-06     0.004      11     111 ..     481     570 ..     478     571 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHH..HSTTTEEEEEEEEEE..TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHH.HHHHTTT..EEEEEEETTTEE CS
   HATPase_c  11 snlvdNavkf..atkageieveikase..ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkk.lvelmgG..eiwvesepgrGt 102
                 + +v+Na+k+  +++ g +e++i+as+   +l++ +eDn  G+ ++                 + + +GlG+ +v++ l  ++g    i+v+ ep+r t
  CTQ29045.1 481 QPIVENAIKHgtSQHLGVGEITIRASQddRWLQLDIEDNA-GLYRA-----------------NPQASGLGMNLVDRrLRARFGAdcGISVTCEPERFT 561
                 5689******543355555666666333489999****87.44443.................33479********97777999633577799****** PP

                 EEEEEEESS CS
   HATPase_c 103 tftftlple 111
                 ++t++lple
  CTQ29045.1 562 RVTLRLPLE 570
                 *******97 PP

>> SpoVT_C  Stage V sporulation protein T C-terminal, transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.8e-08   8.4e-05       8     125 ..     246     367 ..     241     368 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.8e-08
     SpoVT_C   8 eyaeslaetlgh.ivlitDrdqiiavagask.kellekeiske.leklmeerktvlakkeekklv.veeekeeysaqviaPIia.eGdviGaVillske 101
                 ++a++l + l+  +v+itDrd+ +a  g++    l +k+is++  ++++e  + v+a+ +e  +   +  + ++ + +++P+   +  viG++ l + +
  CTQ29045.1 246 KVAQVLIQELDIgAVAITDRDKLLAFTGIGDdHHLPGKPISSSyTQRAIETGEVVYADGNEVPYRcSIHPHCKLGSTLVIPLRGeNQRVIGTIKLYEAK 344
                 6788888888863689************99648999*****99567789999998877643333345788889*********962678********888 PP

     SpoVT_C 102 ekkklgelekklaetaAsFLgkqm 125
                 ++  ++ ++  l e +A++L+ q+
  CTQ29045.1 345 NRL-FSSINRTLGEGIAQLLSAQI 367
                 776.9***************9885 PP

>> ECF-ribofla_trS  ECF-type riboflavin transporter, S component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   7.6   8.8e-07     0.002      16     156 ..      64     196 ..      57     209 .. 0.63

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.8e-07
                      HHHHHHHH---B-S.SS-B--TTHHHHHHHHHHSS--STHHHHHHHHHHHHHHHSS-G.GGHHHHHHHHHHHH.HHHHHH--S-S-SSH...HH CS
  ECF-ribofla_trS  16 lvvvltlfisIplpantegsinlgdavlalaallfGpvvGflvGaiGsalaDllsgYg.iwapftliikgliG.livGliakklkknkengvfk 107
                      +++++++ +   +    ++  n+  +  ++ +ll GpvvG+lvG+ G +  + l g++ +++ +++i++gl+G l+ ++++k+  +  +     
       CTQ29045.1  64 IFCIMGTYFGLHIE---DSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSLGGMTaLSCMVSTIVEGLLGgLVHSVLVKRG-RPDK-VFSP 152
                      56666666666664...56778888999999*************************9989999999999988724445555555.4444.2333 PP

                      HHHHHHHHHHHHHHHHHHHHHH............S-HHHHHHHHHHHHHHH CS
  ECF-ribofla_trS 108 ilalvlfaivmvigyviaegll.pildiiiy.sepaekvalqsipaniiqa 156
                      + a  +  ++ +++ +i+ +++ p++d +   +++a  ++       ++++
       CTQ29045.1 153 LTAGAITFVAELVQMMIILLIArPFQDALHLvQSIAAPMM-------VTNT 196
                      3334444444444444444444433333322233333333.......3333 PP

>> ECF_trnsprt  ECF transporter, substrate-specific component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  13.1   0.00026      0.57      29     156 ..      81     194 ..      25     208 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00026
                  EESHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCHT-SSTTHHHHHHHHHHHHCHHHHHHHHHHCCCHTTHHHHHHHHHHHHCCCCCHHHHHHHCCCH CS
  ECF_trnsprt  29 itiihipvllggllfGpikGailgiitsvlkailtggtgalssfvpiaflsriligliagllykkgkkknlkeivvsfilagvlgtivatllvlliil 126
                  + +  i ++ ggll Gp++G+++g+ + + ++ l gg++als      ++s i+ gl+ gl+     k+ +  +v+s + ag + +++ ++  ++iil
   CTQ29045.1  81 ANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSL-GGMTALS-----CMVSTIVEGLLGGLVHSVLVKRGRPDKVFSPLTAGAITFVAELVQ-MMIIL 171
                  6677789999************************.6666655.....456666666666666666666666666666666665555555554.44444 PP

                  HHHS.............--HHHHHHHHHCC CS
  ECF_trnsprt 127 plylklktakaiaiagkallaailgpiivk 156
                  ++    +  +a +     l+  i  p  v+
   CTQ29045.1 172 LIAR--PFQDALH-----LVQSIAAPMMVT 194
                  3332..2222222.....222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3976.15
//
Query:       CTQ29046.1  [L=245]
Description: putative transporter subunit: permease component of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-21   77.3  17.5    1.2e-21   77.3  17.5    1.7  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.035   14.2   1.4      0.035   14.2   1.4    3.4  5  Ldr_toxin     Toxin Ldr, type I toxin-antitoxin system


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.21   1.9e+03      53      82 ..      10      39 ..       7      43 .. 0.69
   2 !   77.3  17.5   1.4e-25   1.2e-21       3     181 ..      68     240 ..      64     243 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.21
  BPD_transp_1 53 ilpviillllsaapyvrlirraalrslpkd 82
                  +l +++++ll  +py   ++++ + +lp+ 
    CTQ29046.1 10 WLIALFIGLLAGLPYSAPLFSRLFPELPRP 39
                  455777888888888777777777777765 PP

  == domain 2  score: 77.3 bits;  conditional E-value: 1.4e-25
  BPD_transp_1   3 llGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   +lG+ +a  +  ++ ++ l+ ++  +++++P+++++ + v       +lg+++lp++i+l+l+ + +v+  + a+l s+p +   +a+ +G++ wq+
    CTQ29046.1  68 GLGAGVAvtRPAGGAFRPLVETIAAIGQTFPPVAVLAMAV------PVLGFGWLPALIALALYGILPVLQGTLAGLGSIPPGVSGVAEGMGMTGWQR 158
                   455555555999****************************......9************************************************** PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldp 181
                   ++kv lP+a+p+i++g++ +++ ++g a++++++g+++ lgt+++  ++g+++++i   g+l +++a +++  ++  l+r++++
    CTQ29046.1 159 LYKVELPLAAPVILAGIRTSVIVNIGTATIASTVGAST-LGTPIIIGLSGFNTAYIV-QGALLVALAAIIVDRAFERLTRWISR 240
                   ***********************************999.***************998.77777777777777777777777765 PP

>> Ldr_toxin  Toxin Ldr, type I toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       1.6   1.5e+04       7       9 ..     104     106 ..     101     111 .. 0.55
   2 ?   -3.4   0.0       1.2   1.1e+04      17      24 ..     128     135 ..     128     137 .. 0.77
   3 ?   14.2   1.4   3.9e-06     0.035      14      29 ..     166     182 ..     148     183 .. 0.81
   4 ?   -2.2   0.1      0.51   4.6e+03      16      22 ..     199     205 ..     197     215 .. 0.54
   5 ?   -3.7   0.2       1.5   1.3e+04      23      28 ..     222     227 ..     221     228 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.6
                 HHH CS
   Ldr_toxin   7 aMa 9  
                 aMa
  CTQ29046.1 104 AMA 106
                 554 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.2
                 HHHHHHHH CS
   Ldr_toxin  17 PvlAGIla 24 
                 Pvl G la
  CTQ29046.1 128 PVLQGTLA 135
                 88888887 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 3.9e-06
                 HHHHH.HHHHHHHHHHH CS
   Ldr_toxin  14 LAAPv.lAGIlaaaIVn 29 
                 LAAPv lAGI +++IVn
  CTQ29046.1 166 LAAPViLAGIRTSVIVN 182
                 8***736*********9 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.51
                 HHHHHHH CS
   Ldr_toxin  16 APvlAGI 22 
                  P++ G+
  CTQ29046.1 199 TPIIIGL 205
                 6787654 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 1.5
                 HHHHHH CS
   Ldr_toxin  23 laaaIV 28 
                 laa+IV
  CTQ29046.1 222 LAAIIV 227
                 677777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1981.21
//
Query:       CTQ29047.1  [L=315]
Description: putative transporter subunit: ATP-binding component of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-32  112.9   0.0    2.2e-32  112.4   0.0    1.2  1  ABC_tran      ABC transporter
    8.8e-07   29.0   0.1      0.018   14.9   0.0    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.2e-05   25.7   0.0    5.6e-05   23.5   0.0    2.2  2  CBS           CBS domain
    4.6e-05   23.9   0.6    0.00019   21.9   0.3    2.0  2  AAA_16        AAA ATPase domain
    0.00024   20.8   0.0    0.00045   19.9   0.0    1.4  1  AAA_29        P-loop containing region of AAA domain
    0.00041   20.2   0.0    0.00056   19.7   0.0    1.1  1  AAA_15        AAA ATPase domain
     0.0006   19.6   0.0     0.0013   18.5   0.0    1.6  1  AAA_30        AAA domain
     0.0012   18.2   0.0     0.0019   17.5   0.0    1.3  1  Zeta_toxin    Zeta toxin
     0.0034   17.7   0.1      0.014   15.7   0.0    2.0  2  AAA_22        AAA domain
     0.0049   16.8   0.0     0.0085   16.0   0.0    1.3  1  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.012   14.8   0.0      0.015   14.5   0.0    1.1  1  G-alpha       G-protein alpha subunit
      0.027   13.9   0.0        1.7    8.0   0.1    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
      0.074   12.4   0.1       0.13   11.6   0.1    1.4  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
       0.18   11.4   0.8       0.34   10.4   0.1    1.8  2  AAA_25        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.0   1.7e-35   2.2e-32       2     136 ..      18     162 ..      17     163 .. 0.91

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 1.7e-35
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 k+++l+l+eg   ++vG +G+GKSt lk++ +ll+p+ G+i++ g+d+++q+   lr+++g+  q   lfp+ tv++n                ++i++
  CTQ29047.1  18 KDLTLELREGAFSVLVGTSGSGKSTTLKMINRLLEPDRGTIRFAGEDIRQQPVLTLRRRMGYAIQSIGLFPHWTVAQNiatvpqlqrwpraRIADRIDE 116
                 899********************************************************************************9988766666666777 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +++ lgl+ +  ++    p++LSgGq+qrv +aral+ +p++ll+DEp+
  CTQ29047.1 117 LMALLGLEATLRDR---YPHQLSGGQQQRVGVARALAADPEVLLMDEPF 162
                 77777777755555...59*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   8.9e-05      0.11       1      24 [.      29      52 ..      29      84 .. 0.77
   2 !   14.9   0.0   1.4e-05     0.018     231     298 ..     129     194 ..     104     199 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.9e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                + vl+G  gsGKS+ L+ +  l  
  CTQ29047.1 29 FSVLVGTSGSGKSTTLKMINRLLE 52
                68*****************98853 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.4e-05
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll..ellkelsrngaQviltTHS 298
                 ++ +++lS G+++  +++ al++++    +ll DEp   L+P ++r+ l  e+l++++  g  ++l+TH+
  CTQ29047.1 129 DRYPHQLSGGQQQRVGVARALAADP---EVLLMDEPFGALDP-VTREALqqEMLRIHRLLGRTIVLVTHD 194
                 5678999****99999999999999...9*************.55555557777888889*********8 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       4.5   5.8e+03      19      33 ..     170     183 ..     164     184 .. 0.83
   2 !   23.5   0.0   4.4e-08   5.6e-05      13      53 ..     266     306 ..     250     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.5
                 HHHHHH.HHHHTSSEE CS
         CBS  19 eealel.mrekgvsrl 33 
                 +eal++ m +  ++rl
  CTQ29047.1 170 REALQQeMLR--IHRL 183
                 5889888977..9998 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 4.4e-08
                 ETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHH CS
         CBS  13 ppdttleealelmrekgvsrlPVVdedgklvGivtlrDllr 53 
                 + ++tl+eal +++ +++  lPVVd +g+++G ++  Dllr
  CTQ29047.1 266 TVTMTLREALSQFVARRCETLPVVDAEGRPCGTLHFADLLR 306
                 5689*********9999**********************98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.3   1.5e-07   0.00019      28     154 ..      31     205 ..      20     224 .. 0.66
   2 ?   -1.3   0.0       1.9   2.4e+03     107     132 ..     256     285 ..     211     289 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.5e-07
      AAA_16  28 llsGesGvGKsslvrellralekdggiflrgkcdqlesa........ipysa.laqalareellrqllde..aesaeleawrekleeala......... 106
                 +l+G sG+GKs+ ++++ r le d   ++r   ++ +++        + y++  + ++   ++ + +++   ++   +++ +++++e +a         
  CTQ29047.1  31 VLVGTSGSGKSTTLKMINRLLEPD-RGTIRFAGEDIRQQpvltlrrrMGYAIqSIGLFPHWTVAQNIATVpqLQRWPRARIADRIDELMAllgleatlr 128
                 799***************999999.34444444444222233333232222223333333333333333333333344445555555555666666666 PP

      AAA_16 107 ................................avpelagaeasrllellkrllallsrderplvlvlDdlqwadeaslql 154
                                                 + ++l++  +++l +++ r+ +ll r   ++vlv  d++ a     +l
  CTQ29047.1 129 dryphqlsggqqqrvgvaralaadpevllmdePFGALDPVTREALQQEMLRIHRLLGR---TIVLVTHDIDEALRLADHL 205
                 666666666667889999999999999999998899999999**********999998...6999999999776655554 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.9
      AAA_16 107 avpelagaea...srllellkrll.allsr 132
                 +   lag++      l+e+l++++ +++++
  CTQ29047.1 256 PDERLAGEGLtvtMTLREALSQFVaRRCET 285
                 444444444477788888999988777665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.5e-07   0.00045      16      54 ..      21      60 ..      16      62 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.5e-07
      AAA_29 16 tieidlkg.atlltGpsGsGKSTllDAiqalLvpak.kvrf 54
                t+e++ +g + +l+G+sGsGKST l  i+ lL p++ ++rf
  CTQ29047.1 21 TLELR-EGaFSVLVGTSGSGKSTTLKMINRLLEPDRgTIRF 60
                45555.456999********************999866666 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.4e-07   0.00056      14      50 ..      17      54 ..      16      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.4e-07
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsilealdlFlnnk 50
                 kd +++l e  ++vl+G+ +sGKS+ l++++ +l+ +
  CTQ29047.1 17 VKDLTLELREGaFSVLVGTSGSGKSTTLKMINRLLEPD 54
                588999999999**********************9977 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     1e-06    0.0013      17      73 ..      27      84 ..      16     161 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1e-06
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa..eelgieasti 73
                g  ++vl+G  G+GK+t+lk +++++e + g++  +    ++  vL+  + +g + ++i
  CTQ29047.1 27 G-AFSVLVGTSGSGKSTTLKMINRLLEPDRGTIRFAGEDIRQQPVLTlrRRMGYAIQSI 84
                3.599**********************99777777776666655533224444444444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.5e-06    0.0019      19      56 ..      30      67 ..      18      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.5e-06
  Zeta_toxin 19 illgGqpGAGKselaellkdelerqgnvvrldpDdlRe 56
                 +l+G +G+GKs++++++++ le++++ +r+ + d+R+
  CTQ29047.1 30 SVLVGTSGSGKSTTLKMINRLLEPDRGTIRFAGEDIRQ 67
                5799********************************98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-05     0.014       5      31 ..      27      53 ..      23      77 .. 0.82
   2 ?   -1.4   0.1         2   2.6e+03      54      54 ..     171     171 ..     126     223 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlleqlde 31
                  + v++G sG+GK+t+l+++ + l+ 
  CTQ29047.1 27 GAFSVLVGTSGSGKSTTLKMINRLLEP 53
                56889****************999863 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2
      AAA_22  54 k 54 
                 +
  CTQ29047.1 171 E 171
                 2 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.7e-06    0.0085      89     121 ..      16      49 ..       5      66 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.7e-06
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallp 121
                  ++++l+ +l++  +svlvG SG GKSt +++++ 
   CTQ29047.1  16 AVKDLTLELREgAFSVLVGTSGSGKSTTLKMINR 49 
                  5778888888879**************7766654 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.2e-05     0.015      27      56 ..      31      65 ..      23     124 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-05
                EEEESTTSSHHHHHHHHHHHCS--.....--HHHH CS
     G-alpha 27 lllGqseSGKsTilkqlkllykkg.....fseeel 56
                +l+G+s+SGKsT+lk + +l ++      f  e++
  CTQ29047.1 31 VLVGTSGSGKSTTLKMINRLLEPDrgtirFAGEDI 65
                599***************99877656666655555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1    0.0013       1.7      24      45 ..      27      48 ..      15      62 .. 0.81
   2 ?    3.9   0.0     0.024        31     135     181 ..     133     175 ..      58     206 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0013
                SSEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAil 45
                  f+++vG  GSGKs  l  i 
  CTQ29047.1 27 GAFSVLVGTSGSGKSTTLKMIN 48
                4699***********9887775 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.024
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvae 181
                 ++LSgG+++ v +a  +A    +p+ + l+De   aLD   ++++ +
  CTQ29047.1 133 HQLSGGQQQRVGVARALAA---DPE-VLLMDEPFGALDPVTREALQQ 175
                 49*********99998874...455.457888888888888877754 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1    0.0001      0.13      32      57 ..      21      45 ..       5      51 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0001
                  EEEGGGS-.SEEEE--TTSSHHHHHH CS
  FtsK_SpoIIIE 32 vldlkkmashllvaGatgsGKStaln 57
                  +l+l++ a   +++G++gsGKSt+l+
    CTQ29047.1 21 TLELREGA-FSVLVGTSGSGKSTTLK 45
                  34455555.8899***********97 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00027      0.34      20      49 ..      15      43 ..       4      46 .. 0.81
   2 ?   -3.3   0.1       4.5   5.8e+03     167     188 ..     172     193 ..     167     193 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
      AAA_25 20 pprrwlvkgllpagelallaGapgtGKttl 49
                p +++l  +l ++g++++l+G +g+GK+t 
  CTQ29047.1 15 PAVKDLTLEL-REGAFSVLVGTSGSGKSTT 43
                5566666666.69***************96 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.5
      AAA_25 167 alvealeriarrtgaavllvhH 188
                 al + + ri r +g +++lv H
  CTQ29047.1 172 ALQQEMLRIHRLLGRTIVLVTH 193
                 5567778889999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2411.61
//
Query:       CTQ29048.1  [L=385]
Description: putative transporter subunit: permease component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-20   73.5  18.1    1.7e-20   73.5  18.1    2.7  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        2.3    6.2   2.9        3.2    5.7   2.9    1.1  1  Patched       Patched family


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   5.8       0.9     8e+03      43      70 ..      65     129 ..       7     156 .. 0.55
   2 !   73.5  18.1     2e-24   1.7e-20       2     177 ..     192     373 ..     191     380 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.9
  BPD_transp_1  43 f.....................................vilsilghlilpviillllsaapyvrl 70 
                   +                                        ++ g++ +  ++l+ll a   +r+
    CTQ29048.1  65 LpgrivpflhlllaellfllliwgsgqaalelsrhgspLARTSPGSGLWLSLALCLLLASEAIRH 129
                   13322222222223333333344456666666666666555555555555555555555555555 PP

  == domain 2  score: 73.5 bits;  conditional E-value: 2e-24
  BPD_transp_1   2 illGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvf..........vilsilghlilpviillllsaapyvrlirraalrslpkdlvea 86 
                   +l+G+ ++  l r+ +++    +  +v++++Ps++l+ ll++ +            l++ g+++ p++i+l+l+a+ + ++ + a+l+++p+d  e 
    CTQ29048.1 192 LLIGLPLGvwLWRRPRWQAPAFTALNVIQTIPSVALFGLLIAPLaglaryfptlGELGVSGTGVAPALIALTLYALLPLVRGVVAGLQQVPQDALES 288
                   566666666666999999999999***************99999***************************************************** PP

  BPD_transp_1  87 aralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqr 177
                   a+a+G+s  q+fr+v lP+a+p+++ +l+++++  +g av++ ++g++ G+g l+++ +l++ ++     +vl +v+ +++l +v+d+l +
    CTQ29048.1 289 ATAMGMSAGQRFRQVQLPLAMPVLLRSLRVVSVQTVGMAVVAALIGAG-GFGALVFQGLLSSALD-----LVLLGVVPTIALAVVVDALFA 373
                   **********************************************76.7***************.....555666666666666655544 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   2.9   0.00035       3.2     260     310 ..     327     380 ..     308     385 .] 0.70

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.00035
     Patched 260 gvlspvlAivsslGlllwlGfrfnsi....vtvtPFLvLaiGvDdmflmvaawkr 310
                 +v+++ l    ++G+l++ G+++ +     + v+P ++La+ vD +f +  aw +
  CTQ29048.1 327 AVVAA-LIGAGGFGALVFQGLLSSALdlvlLGVVPTIALAVVVDALFALWGAWLK 380
                 22222.2223479*********987522226789******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2886.64
//
Query:       CTQ29049.1  [L=305]
Description: putative transporter subunit: periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-61  207.4   4.1    3.2e-61  207.2   4.1    1.1  1  OpuAC     Substrate binding domain of ABC-type glycine betain


Domain annotation for each model (and alignments):
>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.2   4.1   1.8e-65   3.2e-61       2     257 .]      26     300 ..      25     300 .. 0.96

  Alignments for each domain:
  == domain 1  score: 207.2 bits;  conditional E-value: 1.8e-65
                 EEEEEEESSHHHHHHHHHHHHHHHHTTE.EEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHH..................HHHHHHHHHHHHEEEEEEE CS
       OpuAC   2 tivigsknwteqevlaeilkqllekkGy.kveltnlgstavlfaalasGdiDvypeewtgta..................yeaykkaveekkglevlgp 81 
                 ++++gsk  te+ +l+++++q+le++G+ + ++ +lg+t+v++ a+  G++D+yp e+tg+                   ye++k+ ++ek++l++l p
  CTQ29049.1  26 PVKVGSKIDTEGALLGNMIQQVLESHGVkTINKIQLGTTPVVRGAIVAGELDIYP-EYTGNGafffkdendpawknaqqgYEKVKRLDQEKHQLVWLTP 123
                 89**************************9**************************.******************************************* PP

                 ESEEECEEEEEEHHHHHHHTTTBHHHHCTHHG...GTEEEEEHHCCHSTTSHHCCHHHHHHHHHHT-T.TCEEE.GSCEEEEHH..HHHHHHHTTC.SS CS
       OpuAC  82 lgagnteglavpkyvaekygiksisDLkkpae...dlelgakgeflgrpdgwgcekvtegllkaYgld.kvelv.egseaamda..elyaaykrge.pv 172
                 ++a+nt+++av++++aek++++s++DL+++ +   +++l+a++ef++rpd ++      ++ kaYg++ + +++ +  + +  +  +++aa+++ + ++
  CTQ29049.1 124 APANNTWTIAVRQDLAEKNKLTSLADLSRYLKqggEFKLAASAEFIERPDALP------AFEKAYGFNlNQNQLlSLAGGD--TavTIKAAAQQTSgVN 214
                 ********************************9**9*****************......********66666653444444..455**********9** PP

                 EEEEETTSTHHHHTTEEE-B-TTSTS-SSEEEEEEEEHHHHHHSCTHHHHHHHHC..--HHHHHHHHHHHHTTTT-HHHHHHHHHHH CS
       OpuAC 173 vvyawtPdwaikkydlvvLedpkglfppaynvvpvvrkefaekaPevaafLekls..ldtetlnelnaqvdvegkdpeevAkawlae 257
                 +++a+ +d+ +++++l+ L+dp+g++p  y  +pvvr+++++++P++a++L+++   ld++tl++lna+++veg+d+++vA+++l++
  CTQ29049.1 215 AAMAYGTDGPVAALGLQTLSDPQGVQPI-YAPTPVVREAVLKAYPQIADWLQPVFasLDEKTLQQLNARIAVEGQDAKRVAADYLQQ 300
                 ****************************.********************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2395.70
//
Query:       CTQ29050.1  [L=765]
Description: beta-D-glucoside glucohydrolase, periplasmic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-99  331.3   0.0    9.2e-99  330.8   0.0    1.2  1  Glyco_hydro_3    Glycosyl hydrolase family 3 N terminal domai
    2.4e-62  210.5   0.3    7.1e-62  209.0   0.2    1.8  2  Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domai
    3.9e-23   81.3   0.1    7.8e-23   80.4   0.1    1.5  1  Fn3-like         Fibronectin type III-like domain
  ------ inclusion threshold ------
      0.035   14.4   0.0      0.082   13.2   0.0    1.6  1  CARDB            CARDB
       0.13   12.4   0.1       0.33   11.1   0.1    1.6  1  Ig_GlcNase       Exo-beta-D-glucosaminidase Ig-fold domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_3  Glycosyl hydrolase family 3 N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.8   0.0  2.6e-102   9.2e-99       1     319 []      46     352 ..      46     352 .. 0.99

  Alignments for each domain:
  == domain 1  score: 330.8 bits;  conditional E-value: 2.6e-102
                    -HHHHHHHTEE-B-SE-S--HHHHHHHHHH--SEEE--GGGTSSHHHHHHHHHHHHHH-SS....S--EEEE---BTTB---SSS---S-HHHHHH CS
  Glyco_hydro_3   1 tldekigqLlvvevseekkseeaaellkkyqvGgiilfaenledtkqleelieaarqaseksrlgiPlllavDqegGlvqrlgegtlfPsalalaa 96 
                    t+dekigqL++++v++++++e+++e++k+ qvG+i++       t++  +++ +++q ++ srl+iPl++a+D+++G++      t+fP++l+la+
     CTQ29050.1  46 TVDEKIGQLRLISVGPDNPKEAIREMIKNGQVGAIFN-------TVTRPDIRVMQDQVMQLSRLKIPLFFAYDVLHGQR------TVFPISLGLAS 128
                    79***********************************.......7**********************************......*********** PP

                    HT-HHHHHHHHHHHHHHHHHHT--EE---B-----STTSSSGGGSS-SSHHHHHHHHHHHHHHHHHT......T-EEEEEEETTGTT-SSETTTSE CS
  Glyco_hydro_3  97 tssldlikelgriiakelralgididfaPvvdvnrdprngigvrsFsedpelvaalaaamvkGlqga......gvaatvKHFpghGdgavdshkel 186
                    +++ld++k++gr++a+e++++g+++++aP+vdv+rdpr+g+++++F+ed++l++ +++amv+ +qg+      +v+++vKHF+++  gav+++ke+
     CTQ29050.1 129 SFNLDAVKTVGRVSAYEAADDGLNMTWAPMVDVSRDPRWGRASEGFGEDTYLTTMMGQAMVESMQGKspadrySVMTSVKHFAAY--GAVEGGKEY 222
                    *************************************************************************************..9******** PP

                    EB----HHHHHHTTHHHHHHHHHTT-SEEEE---B-TTT---BGGG-HHHHIIIIIIIS---SEEEES-TTSHHHHCCS-...HHHHHHHHHHHT- CS
  Glyco_hydro_3 187 ptvdhseeelrevdlvpfqaaieagvdsVMtaHvqfpaldgtpatgskklltdvLRkelGFdGvvvsDalamkeiadrgg...keeavvlaLkAGv 279
                    +tvd+s ++l+++++ p++a ++ag ++VM+a   +++l+gtpat++++ll+dvLR+++GF+G++vsD+ a+ke++++g    +e+av++aLk+G+
     CTQ29050.1 223 NTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVA---LNSLNGTPATSDSWLLKDVLRDQWGFKGITVSDHGAIKELIKHGVasdPEDAVRVALKSGI 315
                    ********************************...********************************************99999************ PP

                    SBEES-S---SGHHHHHHHHHTTSS-HHHHHHHHHHHHHH CS
  Glyco_hydro_3 280 DilLvpeertseikalkkavkeGeltearidesvrrvlrl 319
                    ++++ +e+++   k+l  +vk+G++t+a++d++ r+vl++
     CTQ29050.1 316 NMSMSDEYYS---KYLPGLVKSGKVTMAELDDATRHVLNV 352
                    *********8...************************985 PP

>> Glyco_hydro_3_C  Glycosyl hydrolase family 3 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.0   0.2     2e-65   7.1e-62       1     204 []     395     648 ..     395     648 .. 0.94
   2 ?   -1.9   0.0      0.76   2.7e+03     125     157 ..     661     691 ..     652     719 .. 0.76

  Alignments for each domain:
  == domain 1  score: 209.0 bits;  conditional E-value: 2e-65
                      -EEEEEGSS--S-S-STEEEEEESGGGS.SS-SS-BSSS----S---HHHHHHHHHHH.................................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................... RF
  Glyco_hydro_3_C   1 iVLLkNennlLPLkkklkkiaviGpnad.etlklGggsgtvtvsylvsplegirerles................................... 58 
                      +VLLkN  ++LPLkk+  +iav+G  ad ++ ++G +s++   ++ v++l+gi+e+l++                                   
       CTQ29050.1 395 LVLLKNRLDTLPLKKS-GTIAVVGALADsKRDMMGSWSAAGVADQSVTVLTGIKEALGDngkviyakganvtddkgivdflnlyenavqvdprs 487
                      59***********666.5**********8899*********99999***********99*********************************** PP

                      ..-HHHHHHHHHHHTSEEEEEEEES...SB-TTSCSGHHSSTTHHHHHHHHHHTTSSEEEEEEESSGG--TTTGTTTEEEEEE-S--GCCHHHH CS
                      .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C  59 .eegideaveaakeaDvavvvvgedpeiegEgvDrtdlalpeaqdelikavaaanknvvvvlqsggpvavepwkeenvkAilaawlpGqegGta 151
                       +e+ideav+aak++Dv+v+vvge + ++ E + rtd++lp++q++li+a++a++k+ v+vl++g+p+a+ ++ +++++A+l++w++G+egG+a
       CTQ29050.1 488 pQEMIDEAVAAAKQSDVVVAVVGEAQGMAHEASSRTDITLPQSQRNLIAALKATGKPLVLVLMNGRPLALVKE-DQQADALLETWFAGTEGGHA 580
                      **********************************************************************998.88****************** PP

                      HHHHHTTSS---B--SS-EESSSGGG..........................S.-----SETTTT-BCH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx............xx.xxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 152 iadvLfGdvnPsGkLpvtfpksledlpddyyeek...dt............yk.fegtplYpeGlglsY 204
                      iadvLfGd+nPsGkLp++fp+s++++p+ yy++    ++            y  + ++plYp+G+glsY
       CTQ29050.1 581 IADVLFGDYNPSGKLPMSFPRSVGQIPT-YYSHLntgRPynpekpnkytsrYFdEANGPLYPFGYGLSY 648
                      **************************99.6666644422667788888998666999999********9 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.76
                      G--TTTGTTTEEEEEE-S--GCCHHHHHHHHHT CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_3_C 125 vavepwkeenvkAilaawlpGqegGtaiadvLf 157
                       ++ p ++ +v+A +++   G+++G  + ++ +
       CTQ29050.1 661 ATM-P-RDGSVTASVQVTNTGNREGATVIQLYL 691
                      344.3.367999******99*999998877655 PP

>> Fn3-like  Fibronectin type III-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.1   2.2e-26   7.8e-23       2      70 ..     686     753 ..     685     754 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 2.2e-26
                 EEEEEEEESS-STTSBS-EEEEEEEEEE-TT-EEEEEEEEECGGG-EEETTTTEEE--SCEEEEEEESS CS
    Fn3-like   2 vvqlYvsdpessverpvkeLkgFekveLapGesktvtftldrkdlsvwdeekqkwvvepGeytvlvgts 70 
                 v+qlY++d  +s++rpvk L+gF+kv+L+pGe++tv+f++d+++l +w+++ +k+v+epG++ v++g +
  CTQ29050.1 686 VIQLYLQDVTASMSRPVKMLRGFKKVTLKPGETQTVSFPIDVDALKFWNQQ-MKYVAEPGKFNVFIGVD 753
                 99*************************************************.79************976 PP

>> CARDB  CARDB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.3e-05     0.082      20      86 ..     668     743 ..     651     746 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.3e-05
                 EEEEEEEEEE-SSS-EEEEEEEEEETTEEE.EEEEE........SEE-CTEEEEEEEEEE-S.-S-CEEEEEEEEST CS
       CARDB  20 entitvtvkNqGtaasgatkvalyldgelv.gtvtv........psLaagesttvsftwtte.ategevtltvvvDp 86 
                 ++t +v+v+N+G+  +gat ++lyl + ++  + +v          L++ge+ tvsf + ++ ++  + ++++v++p
  CTQ29050.1 668 SVTASVQVTNTGNR-EGATVIQLYLQDVTAsMSRPVkmlrgfkkVTLKPGETQTVSFPIDVDaLKFWNQQMKYVAEP 743
                 678899******97.6899999***999997778889999999999***********88887666666666666655 PP

>> Ig_GlcNase  Exo-beta-D-glucosaminidase Ig-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   9.1e-05      0.33      25      91 ..     658     730 ..     648     740 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.1e-05
  Ig_GlcNase  25 vtakk...keetkvtvtLenkssvp.AffvrlnlvdaageevlPvlwsDNy..vtLlPgEsltltveypaaal 91 
                 +++++   + + +++v+++n+++   A +++l l d + +   Pv +   +  vtL PgE++t+++ ++ +al
  CTQ29050.1 658 MSSATmprDGSVTASVQVTNTGNREgATVIQLYLQDVTASMSRPVKMLRGFkkVTLKPGETQTVSFPIDVDAL 730
                 4444322244999**********555************9999**999775444***********987766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 5233.25
//
Query:       CTQ29051.1  [L=581]
Description: D-lactate dehydrogenase, FAD-binding, NADH independent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.9e-149  495.2   2.3   7.8e-149  494.8   2.3    1.2  1  Lact-deh-memb  D-lactate dehydrogenase, membrane binding
      9e-09   35.2   0.0    1.5e-08   34.5   0.0    1.3  1  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> Lact-deh-memb  D-lactate dehydrogenase, membrane binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  494.8   2.3  8.7e-153  7.8e-149       1     290 []     278     567 ..     278     567 .. 1.00

  Alignments for each domain:
  == domain 1  score: 494.8 bits;  conditional E-value: 8.7e-153
  Lact-deh-memb   1 vfyigtndaeeltelRreiLsefkelPvsgEYlhrdafdiaekygkdtflaikklgtdrlpklfalkakvdalleklsflpkklsdrllqalskll 96 
                    vfyigtn++++lte+Rr+iL+ef++lPv+gEY+hrd++diaekygkdtfl+i+klgtd++p +f++k ++da+lek+s+++ +++dr++q+l +++
     CTQ29051.1 278 VFYIGTNQPQVLTEIRRHILAEFQHLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGTDKMPFFFTMKGRTDAMLEKVSLFKPHFTDRFMQKLGHVF 373
                    8*********************************************************************************************** PP

  Lact-deh-memb  97 PshlpkrlkeyrdryehhlllkvseegieearayLeelfkeaegeffectaeegkkaflhRfaaagaairyravhekevedivalDiALrrndkdW 192
                    P hlp+r+k++rd+yehhlllk++++gieea+++L+e+f++aeg+ff+ct+eeg+kaflhRfaaagaairy+avh++evedi+alDiALrrnd++W
     CTQ29051.1 374 PAHLPERMKTWRDKYEHHLLLKMAGDGIEEAQRWLTEYFQQAEGDFFACTPEEGSKAFLHRFAAAGAAIRYQAVHADEVEDILALDIALRRNDTEW 469
                    ************************************************************************************************ PP

  Lact-deh-memb 193 letlPeeieekllkklyygHflChVfhqdyivkkGvdakalkeellelldargaeyPaEHnvGhlYkakpelkkfyrklDPtNsfNpGiGktskkk 288
                    +e+lP+ei+++l++klyygHf+ChVfhqdyiv+kGvda+alke++lell+arga+yPaEHnvGhlY+a+++l++fyr+ DPtNs+NpGiGktsk+k
     CTQ29051.1 470 FEHLPPEIDSQLVHKLYYGHFMCHVFHQDYIVRKGVDAHALKEKMLELLKARGAQYPAEHNVGHLYEAPESLQQFYRQNDPTNSMNPGIGKTSKQK 565
                    ************************************************************************************************ PP

  Lact-deh-memb 289 kw 290
                    +w
     CTQ29051.1 566 YW 567
                    99 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   1.7e-12   1.5e-08       2     120 ..      47     170 ..      46     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.7e-12
                    EEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC......SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSG CS
  FAD_binding_4   2 aavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav......atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllgle 91 
                     avv+p++  e+ ++l+++ +a+  +l++++ ++l+ +++       ++ v++++ rl++++ +d+ + ++ + +G+tl  l++al++ g+     
     CTQ29051.1  47 LAVVFPGTLLELWRVLNACVDADKIILMQAANTGLTEGSTpngndyDREIVIISTLRLDKLHLLDK-GEQVLAWPGTTLYSLEKALKPLGREPHSV 141
                    68**********************************777767777555568899989***888886.*******************9999999877 PP

                    .GGTTCGSBHHHTTTTT-EETTEEGG--HH CS
  FAD_binding_4  92 .pgsgipgtvGGaiatnagGygsekyGlir 120
                      +s+i ++v G i +n+gG+ +++  + +
     CTQ29051.1 142 iGSSCIGASVIGGICNNSGGSLVQRG-PAY 170
                    6778888899999*******888774.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4198.32
//
Query:       CTQ29052.1  [L=184]
Description: Phosphinothricin N-acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-17   64.5   0.0    1.4e-17   64.3   0.0    1.0  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    1.3e-08   35.1   0.1    1.7e-08   34.7   0.1    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.7e-06   28.8   0.0      2e-06   28.5   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
     0.0001   22.7   0.0    0.00016   22.1   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00017   21.5   0.0    0.00026   20.9   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.18   11.0   0.0       0.51    9.5   0.0    1.6  2  DUF1194          Protein of unknown function (DUF1194)


Domain annotation for each model (and alignments):
>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   4.6e-21   1.4e-17       1     154 [.      14     169 ..      14     170 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 4.6e-21
  Acetyltransf_4   1 iraateeDakeilaiyaeyvvntaitfeyevssveefekflealdsekeyvflvae.sdrivGyaylgqfkkr.akdwkaelsvylaerdnnkeg 93 
                     ir a ++Da +i a+y   v+n    fe+  ++v+e+ k+++ +  ++  ++lva   ++ivGy+y+   ++r a++   e s+y+    +  +g
      CTQ29052.1  14 IREALPDDAHAIAALYVWHVLNGRASFEEIPPTVDEMRKRIQTV-RDNGLPWLVALwRGAIVGYCYATFYRPRpAYRYTLEESIYVE-SGMGGRG 106
                     89999***********999*********999************9.9****************************************6.78***** PP

  Acetyltransf_4  94 lgrelidaleqvlkeqnienllaei..aspnensiqfhkalGFelvgifkkcikkngrwiDmi 154
                     +g++l+  l+    +   +++la i    +n+ s ++hk++GF+++g+++ +++k g w D +
      CTQ29052.1 107 IGSALLSRLIAECEKGPWRQMLAIIgdGHNNAGSLAIHKKFGFTVAGQLRSVGYKMGDWRDTL 169
                     ****9999998889999********65567899**************************9976 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.1   5.6e-12   1.7e-08      23     117 .]      47     149 ..      25     149 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 5.6e-12
                     H....HHHHHHSTTC.EEEEEEETTEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EE.EEETTEHHHH CS
  Acetyltransf_1  23 e....feesfsleae.gllvaeedgeliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vl.aveedndaai 109
                     +     ++   ++++  +lva++ g ++G++ ++ + + ++++++  es++V +   g+G+GsaLl  l+ ++++   + +  +     +n ++ 
      CTQ29052.1  47 VdemrKRIQTVRDNGlPWLVALWRGAIVGYCYATFYRPrPAYRYTLEESIYVESGMGGRGIGSALLSRLIAECEKGPWRQMlAIiGDGHNNAGSL 141
                     22223334456677757777***********9999999999*********************************996644323346667799999 PP

                     HHHHHTTE CS
  Acetyltransf_1 110 rlYeklGF 117
                     + ++k+GF
      CTQ29052.1 142 AIHKKFGF 149
                     99988999 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   6.8e-10     2e-06       2     138 .]      12     150 ..      11     150 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 6.8e-10
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevm..ry..lpe.pltleeaeewlerawaeeseeegygwaivl.kdtgviGsvglrdleeedee...aelgyml 87 
                     L +r++ ++D+ a+++l+  ++v   r+    e p+t++e ++++++  ++    +g+ w++ l ++  ++G++  + + +++     +e ++++
      CTQ29052.1  12 LEIREALPDDAHAIAALYV-WHVLngRAsfE-EiPPTVDEMRKRIQT-VRD----NGLPWLVALwRGA-IVGYCYATFYRPRPAYrytLEESIYV 98 
                     7899999999999988776.44442332313.2599**********6.444....89*****887777.9****666555554445677777888 PP

  Acetyltransf_3  88 apsfwgkGyateavralleyafeelglerlvavid..keNeaSirvleklGfe 138
                      +   g+G+++  ++ l+  + + + ++++ a i    +N +S ++++k Gf+
      CTQ29052.1  99 ESGMGGRGIGSALLSRLIAECEKGP-WRQMLAIIGdgHNNAGSLAIHKKFGFT 150
                     88899****************7777.99988888623689************6 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   5.2e-08   0.00016       6      75 ..      65     150 ..      56     151 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5.2e-08
                     EEEEETTEEEEEEEEEEES......TCTEE....EEE-GGGTTSSHHHHHHH.H.TT..SEEE......EE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7   6 fVaeddgkivGfialslld......aeitr....laVdpeyrgkGiGraLle.a.ae..kgii......le.qlelnaekaikfYeklGFe 75 
                     +Va   g ivG+++++ +       +        ++V     g+GiG+aLl  + ae  kg        ++   + na  +++  +k+GF+
      CTQ29052.1  65 LVALWRGAIVGYCYATFYRprpayrY---TleesIYVESGMGGRGIGSALLSrLiAEceKG-PwrqmlaIIgDGHNNA-GSLAIHKKFGFT 150
                     57777899*****9999999997642...23457*****************8433113433.1222222222222222.667789999997 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   8.7e-08   0.00026      19     110 ..      45     153 ..      20     159 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 8.7e-08
  Acetyltransf_10  19 p..ealrerie...egealllvaeeggkivGvi.el.rdgs......hisllfVdpeyrgqGigkaLleaveeeaekdgikl..eltvnasp.. 95 
                      p  +++r+ri+   ++    lva + g ivG++ ++ ++ +        + ++V++   g+Gig+aLl ++++e+ek + ++  ++  + ++  
       CTQ29052.1  45 PtvDEMRKRIQtvrDNGLPWLVALWRGAIVGYCyATfYRPRpayrytLEESIYVESGMGGRGIGSALLSRLIAECEKGPWRQmlAIIGDGHNna 138
                      33689999996688999999*************7444555568755333456***********************8876665443333333312 PP

  Acetyltransf_10  96 yavpfYeklGFkavg 110
                         ++ +k+GF++ g
       CTQ29052.1 139 GSLAIHKKFGFTVAG 153
                      556667777776665 PP

>> DUF1194  Protein of unknown function (DUF1194)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.44   1.3e+03     163     187 ..      23      47 ..      12      56 .. 0.63
   2 ?    9.5   0.0   0.00017      0.51      96     133 ..     106     141 ..      94     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.44
     DUF1194 163 aeldayyeeevigGpgaFvltanef 187
                 + + a y  +v++G ++F +   ++
  CTQ29052.1  23 HAIAALYVWHVLNGRASFEEIPPTV 47 
                 4677778888888888886554444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00017
     DUF1194  96 aigeAlefaaallaenpveglrrviDvSGDGpnnegle 133
                 +ig+Al   ++l+ae +   +r+++ + GDG+nn+g  
  CTQ29052.1 106 GIGSALL--SRLIAECEKGPWRQMLAIIGDGHNNAGSL 141
                 5666665..47888888888****************44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1550.15
//
Query:       CTQ29053.1  [L=316]
Description: D-alanyl-D-alanine endopeptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-83  279.2   0.4    3.2e-83  278.9   0.4    1.1  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase
    2.8e-10   40.2   0.3    4.5e-10   39.5   0.3    1.3  1  Beta-lactamase2  Beta-lactamase enzyme family
     0.0024   17.2   1.6       0.29   10.3   0.1    2.2  2  Beta-lactamase   Beta-lactamase
      0.004   15.9   1.8       0.51    9.0   0.4    2.1  2  Peptidase_S13    D-Ala-D-Ala carboxypeptidase 3 (S13) family


Domain annotation for each model (and alignments):
>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.9   0.4   7.2e-87   3.2e-83       2     240 ..      31     262 ..      30     263 .. 0.98

  Alignments for each domain:
  == domain 1  score: 278.9 bits;  conditional E-value: 7.2e-87
                    TTSS---.--SSSEEEEEETTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCSGTTSSTTS-TTT-EEEHHHHH CS
  Peptidase_S11   2 akaasepleiaaksailvdantGkvLyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgnnkevsniflkkgskvsvkdLl 97 
                    a++as+p eia++sa++vd++t k++y+ ++d v+++AS+tK+mTa++vl+a    +l+e  +v+is++++++g    ++++++  +s++s++d+l
     CTQ29053.1  31 AVTASQP-EIASGSAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAH--LPLDEMLTVDISHTPEMKG----IYSRVR-LNSQISRRDML 118
                    5689999.*********************************************..*******************....899998.899******** PP

                    HHHHCC--HHHHHHHHHHHHSSHHHHHHHHHHHHHHTT-TT-B-SSSSSTSHTTCBB-HHHHHHHHHHHHHH.HHHHHHGGGESEEEET.TECTEE CS
  Peptidase_S11  98 egllvssgNdAavalAekiaGsekaFvkmMnkkakelGlkntkfvnptGLdnenqvssArdlailakallkd.lpeelkitkeksltfn.gikkln 191
                     ++l+ss+N+Aa++lA++++G+++aF+ +Mn+ka++lG++ t++v+ptGL+ +n vs+Ardl+ l+ a+ ++ l+ +l++tke+++tf+ + ++l 
     CTQ29053.1 119 LLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAQALGMTHTRYVEPTGLSVHN-VSTARDLTKLLIASEQYpLIGQLSTTKEETATFAhPAYSLP 213
                    ******************************************************.**********************************99***** PP

                    EESSTGGGGTTTSEEEEEEEEEETTTEEEEEEEEEETTEEEEEEEEEES CS
  Peptidase_S11 192 yknknkllyrktlnvdglktGytkkAgeclvatavenqmrlisVvlnak 240
                    ++n+n+l+yr+++n++++ktG+t++Ag+cl++++v+nq ++++Vv++a+
     CTQ29053.1 214 FRNTNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQRPVALVVMDAF 262
                    ***********************************************97 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.3     1e-13   4.5e-10       4     138 ..      52     184 ..      49     201 .. 0.90

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1e-13
                      TSEE.EESTTS-EE-GGGGHHHHHHHHHHHHHCTSTGTT-EEEGGHHHHTSSSTSGGGST.TSEEEHHHHHHHHHHTT-HHHHHHHHHHH.... CS
  Beta-lactamase2   4 geel.gvnadeefpaaStiKvpillalleavlegklslderltltaedivggsgilqklp.gktlslrdlltlmiavSDNtAtnlLidrl.... 91 
                      ++++ + ++d + p+aS+ Kv+ +      vl+  l lde lt+  ++  +  gi ++ + ++++s rd+l l++  S N A+  L  +     
       CTQ29053.1  52 KKIIyASQPDLVRPMASITKVMTA----MVVLDAHLPLDEMLTVDISHTPEMKGIYSRVRlNSQISRRDMLLLALMSSENRAAASLAHHYpggy 141
                      555547899***************....99999**************************9999*************************998877 PP

                      .T.HHHHHHHHHHCTHTTSB--SHTTCCHHHTTSSTTEE-HHHHHHHHH CS
  Beta-lactamase2  92 .g.leavnawlkelglretrlrrklpdleaadkdkrntttardlarlle 138
                         + a+na +++lg+++tr  ++  +l++      n++tardl++ll 
       CTQ29053.1 142 dAfIRAMNAKAQALGMTHTRYVEPT-GLSV-----HNVSTARDLTKLLI 184
                      6457899*************99885.5555.....9***********96 PP

>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   6.4e-05      0.29      44      66 ..      58      80 ..      32      83 .. 0.82
   2 !    6.2   0.1    0.0012       5.4     222     308 ..     173     259 ..     130     277 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.4e-05
                    ESTTSBEEEGGGHHHHHHHHHHH CS
  Beta-lactamase 44 vtadtlfriaSvtKtftaaavlq 66
                     ++d + ++aS+tK++ta++vl+
      CTQ29053.1 58 SQPDLVRPMASITKVMTAMVVLD 80
                    5799999**************87 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0012
                     EEEHHHHHHHH...HHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCHTEEEEEEESTEEEEEEEECGGTEEEEEE CS
  Beta-lactamase 222 istardlarfl...glalegglllsaetlaqltaklssgttrpagiraglglGwvladktgapgtfghtGggygtyvfvdpeanlvvavl 308
                     +stardl ++l   +   + g+l+++++  ++ a+  ++  + ++ +  +   w+++ ++ +    +  G     +  v+++++++++v+
      CTQ29053.1 173 VSTARDLTKLLiasEQYPLIGQLSTTKEETATFAHPAYSLPFRNTNHLVYRDNWNIQLTKTG--FTNAAG-HCLIMRTVINQRPVALVVM 259
                     8**********888777777888888888888888888888888888888999999866654..555555.5555555677778888876 PP

>> Peptidase_S13  D-Ala-D-Ala carboxypeptidase 3 (S13) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.4   0.00011      0.51       8      56 ..      33      79 ..      26      89 .. 0.84
   2 !    6.2   0.0   0.00079       3.5     313     363 ..     147     195 ..     115     198 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00011
                   HHTTGCGTTSEEEEEEEETTTTEEEEEESTTSEB--GGGHHHHHHHHHH CS
  Peptidase_S13  8 iladpeLegavagvvvqdaetgkelydhqgdtpllPAStqKllTAaaAl 56
                    + +pe+  a    ++ d++t+k++y  q d     AS  K++TA+  l
     CTQ29053.1 33 TASQPEI--ASGSAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVL 79
                   5667997..4445559****************9999*********9765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00079
                    HHHHHHHHTT--CTTSB-S-SSS-STT-BBEHHHHHHHHHHHHCTCCHHHH CS
  Peptidase_S13 313 avrerLskagidtanlvLeDgSGLSrknlvtaktlaqlLeaiadqpalqal 363
                    a++ + +   + ++ ++ ++  GLS +n  ta+ l +lL a  + p   +l
     CTQ29053.1 147 AMNAKAQA--LGMTHTRYVEPTGLSVHNVSTARDLTKLLIASEQYPLIGQL 195
                    44443333..345666778999******************99998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2558.67
//
Query:       CTQ29054.1  [L=195]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-35  122.9  10.7    1.4e-35  122.6  10.7    1.1  1  DUF1282   Protein of unknown function (DUF1282)
    6.7e-28   97.5  14.3    6.7e-28   97.5  14.3    1.5  1  Yip1      Yip1 domain
  ------ inclusion threshold ------
       0.38   10.4   5.2       0.58    9.9   4.1    1.8  2  DUF697    Domain of unknown function (DUF697)
       0.59    9.9   3.1       0.71    9.7   0.6    2.2  2  Vpu       Vpu protein


Domain annotation for each model (and alignments):
>> DUF1282  Protein of unknown function (DUF1282)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6  10.7   3.2e-39   1.4e-35       1     170 [.       7     177 ..       7     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 3.2e-39
     DUF1282   1 lltsPaeefeeikkreetgkvlyivlillllliglvvfiystfqvlseiltkqankltlassliisvvfylal..gvlvlayliklmgrtydsqhsysk 97 
                 l+++P +e   ik + et+++ y+ ++ll+++++++++++ t+q++++ +++ + kl++  +l+++v+fy ++  gv++++ +i +m+r y  q+s++ 
  CTQ29054.1   7 LFAHPNREMSVIKSENETISHHYTHHVLLMAAVPVICAFIGTTQLGWNFGDGTVIKLSMLTGLALAVLFYAVMlaGVAIMGRVIWWMARQYPQQPSLKR 105
                 79***********************************************************************9************************* PP

     DUF1282  98 ifafaayalvplflgglalglsllllvalvslllllyvvvLlylGvptlmnirekdraiviallvlvvsllil 170
                 +++fa+y+++plfl+g++++++l +l alv++++l+y+ +LlylG+pt+  i ++++++ +a+++l++++l+l
  CTQ29054.1 106 CMVFAGYVATPLFLSGIVALYPLVWLCALVGTIALFYTGYLLYLGIPTFLSI-NREEGLSFASSTLAIGVLVL 177
                 ****************************************************.****************9985 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5  14.3   1.5e-31   6.7e-28       1     169 [.       7     172 ..       7     177 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 1.5e-31
        Yip1   1 llldPrevfrrlkkepp.ilrapdlallllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggylglllgllllalllhliakllggkgsfk 98 
                 l+ +P++ ++ +k e++ i++ ++ ++ll+a+++++++++++++lg+ +++g +v +l+ ++ l+ ++++y+++l+g+++++ +++++a+++ +++s+k
  CTQ29054.1   7 LFAHPNREMSVIKSENEtISHHYTHHVLLMAAVPVICAFIGTTQLGWNFGDG-TVIKLSMLTGLALAVLFYAVMLAGVAIMGRVIWWMARQYPQQPSLK 104
                 678*************************************************.999******************************************* PP

        Yip1  99 qtlsvvgyallPlilgaliaillllllgtllllvgllaliWslvllylglkaahnlskkkallaalillll 169
                 +++ ++gy ++Pl+l++++a+++l +l++   lvg +al+++ +llylg++++  ++++  l +a++ l +
  CTQ29054.1 105 RCMVFAGYVATPLFLSGIVALYPLVWLCA---LVGTIALFYTGYLLYLGIPTFLSINREEGLSFASSTLAI 172
                 ****************************9...***************************999999984444 PP

>> DUF697  Domain of unknown function (DUF697)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.25   1.1e+03      77     110 ..      35      69 ..      28      75 .. 0.71
   2 ?    9.9   4.1   0.00013      0.58      47     135 ..      79     180 ..      57     189 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.25
      DUF697  77 LarsvlknlaglGlvelgtdl.lkqllslnlatkl 110
                 L+  v    a++G+++lg +   +++++l+++t l
  CTQ29054.1  35 LMAAVPVICAFIGTTQLGWNFgDGTVIKLSMLTGL 69 
                 67777788899999999999943456666666655 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00013
      DUF697  47 llavaavnlrlirelaelYgielgyegaqrLarsvlknlaglGlvelgtdl.............lkqllslnlatklsaraaQGvvagllTarvGlsai 132
                 +la++a+  r i+ +a+ Y ++++ ++    a  v++ l   G+v+l   +              + ll l+++t+ls    +G++ + +T  +G+ + 
  CTQ29054.1  79 MLAGVAIMGRVIWWMARQYPQQPSLKRCMVFAGYVATPLFLSGIVALYPLVwlcalvgtialfyTGYLLYLGIPTFLSINREEGLSFASSTLAIGVLVL 177
                 89*********************************************998876666555555555555555************************9999 PP

      DUF697 133 eyl 135
                 e+l
  CTQ29054.1 178 EVL 180
                 886 PP

>> Vpu  Vpu protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.22     1e+03       7      24 ..      76      93 ..      66     105 .. 0.65
   2 ?    9.7   0.6   0.00016      0.71       5      29 ..     170     194 ..     166     195 .] 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.22
         Vpu  7 iglialivaliiaivvWt 24
                +++++++va++  ++ W+
  CTQ29054.1 76 YAVMLAGVAIMGRVIWWM 93
                456666676665555554 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00016
         Vpu   5 eliglialivaliiaivvWtivyre 29 
                  +ig+ +l v+l i +v+W++ yr 
  CTQ29054.1 170 LAIGVLVLEVLLAITVVLWGYGYRL 194
                 46899999999999********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1558.05
//
Query:       CTQ29055.1  [L=189]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-19   69.3   5.6    3.9e-19   69.3   5.6    1.5  2  SNARE_assoc  SNARE associated Golgi protein
  ------ inclusion threshold ------
       0.13   12.1   5.2       0.35   10.6   5.2    1.7  1  DUF4051      Protein of unknown function (DUF4051)
        0.7    9.9   3.4        2.1    8.3   0.1    2.3  2  RseC_MucC    Positive regulator of sigma(E), RseC/MucC
        1.4    8.7   3.6          3    7.6   3.6    1.6  1  DUF2650      Protein of unknown function (DUF2650)


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   5.6   8.7e-23   3.9e-19       3     120 .]      23     144 ..      21     144 .. 0.93
   2 ?   -2.9   0.1       2.1   9.4e+03       5      13 ..     167     175 ..     158     180 .. 0.50

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 8.7e-23
  SNARE_assoc   3 sevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgrkalrrkllsekrvkalerlverygflallllrllpivPrdlvnyvaGltrvs 95 
                  +e++++++Gv++      + l++++++lg ++G+ l yl+gr++g ++lrr + ++ r+++++r+++++ +l+++  r+  ++ r + +++ G++r++
   CTQ29055.1  23 GETITLLGGVAAhqgllKFPLVVIAVALGGMIGDQLLYLVGRRFGGRILRRFASQKARIRKAQRMIQHRPWLFVIGTRFMYGF-RVIGPLLIGASRLP 119
                  577889999999664444555*************************************************************9.************** PP

  SNARE_assoc  96 fkrFflatfiGsipwalvyaylGsl 120
                  ++ F+  +++G+++wal+++++G+l
   CTQ29055.1 120 PRIFLPLNIVGALVWALLFTTIGYL 144
                  ***********************95 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.1
  SNARE_assoc   5 vllvaaGvl 13 
                  +l+v+++v+
   CTQ29055.1 167 ILAVVVVVA 175
                  233333333 PP

>> DUF4051  Protein of unknown function (DUF4051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.2   7.8e-05      0.35       4      25 ..     162     183 ..     160     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.8e-05
     DUF4051   4 aWywlllvvlvvvgyichlkRy 25 
                  W wl+l v+vvv+    l+R+
  CTQ29055.1 162 HWIWLILAVVVVVAAHWWLRRR 183
                 6************999999997 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.6     0.037   1.7e+02      76     123 ..      26      75 ..      13      82 .. 0.65
   2 ?    8.3   0.1   0.00047       2.1      66     117 ..     131     186 ..     126     189 .] 0.77

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.037
   RseC_MucC  76 lllilgallgsall..gssellaalgallglvlgflivrllskrlkkksk 123
                 ++l+ g+++ + ll      +++alg+++g  l +l+ r++  r+ ++++
  CTQ29055.1  26 ITLLGGVAAHQGLLkfPLVVIAVALGGMIGDQLLYLVGRRFGGRILRRFA 75 
                 55666666666664333334455566666666777777777777666655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00047
   RseC_MucC  66 aallvYllPllllilgallgsall....gssellaalgallglvlgflivrllskr 117
                 a +++ l+  ++ + g ++g +l     + + ++ +++a++++v++ +++r+ +++
  CTQ29055.1 131 ALVWALLFTTIGYLGGEVVGPWLHhldaHLKHWIWLILAVVVVVAAHWWLRRRESK 186
                 55666666667777777777777799998899999999999999999999998877 PP

>> DUF2650  Protein of unknown function (DUF2650)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.6   0.00067         3      23      37 .]     159     173 ..     158     173 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00067
     DUF2650  23 elqtWvivlLavliv 37 
                 +l++W++++Lav++v
  CTQ29055.1 159 HLKHWIWLILAVVVV 173
                 9************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1436.26
//
Query:       CTQ29056.1  [L=479]
Description: Multidrug resistance outer membrane protein MdtQ [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-33  114.4  24.2    2.3e-18   66.7   9.7    2.1  2  OEP           Outer membrane efflux protein
  ------ inclusion threshold ------
      0.033   13.7   0.0      0.082   12.4   0.0    1.7  1  Autoind_bind  Autoinducer binding domain


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   9.7   2.6e-22   2.3e-18       1     188 []      67     264 ..      67     264 .. 0.94
   2 !   54.0   6.6     2e-18   1.8e-14       7     188 .]     291     471 ..     285     471 .. 0.93

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 2.6e-22
         OEP   1 ldellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgtt...........svgltlsqplfdggkrrarvkaa 88 
                 l++l+++al+n pd+++ae++i+ aea+++ ++a+  P+ ++s+   +++ ++eg  +++  ++t           ++glt+ + l  +gk+ra vka 
  CTQ29056.1  67 LNNLIQRALANAPDMQIAEQRIRLAEAQARMSQANLGPEMDFSADIERQRMSAEGL-MGPFATDTdgntgpwytngTFGLTAGWDLDLWGKNRALVKAR 164
                 689******************************************99998887654.55555555578899**************************** PP

         OEP  89 kaqleaaeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyll 187
                   +l+a+ a+ +q+r+ l   va +y+q+++  ++ +++++  ++++ +++  +a+y+ G ++  + ++ + +++++ ++la     ++  +a+L++l+
  CTQ29056.1 165 IGELKAQVAEQAQTRELLSGSVARLYWQWQTEAAIKAVLQQVKNEQNNIVTVDKALYQRGITNSAEGAENDINVSKTDQQLADVTGTMKEIEARLMALT 263
                 ****************************************************************989999999***********************999 PP

         OEP 188 g 188
                 +
  CTQ29056.1 264 N 264
                 7 PP

  == domain 2  score: 54.0 bits;  conditional E-value: 2e-18
         OEP   7 lalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqleqarqq 105
                   l+++pdl+ a   iea+  +++aaka+f+P+++l +  +++    ++ +  + ++   v+++l++p+fd+g+ +a++ +a aq   + aq+++a+ +
  CTQ29056.1 291 ELLARRPDLQVAHWYIEASLSEVDAAKAAFYPDINLMAFLQQDALHLSDLFRHSAQQM-GVTAGLTLPIFDSGRLNANLDIASAQNSLSIAQYNKAVVD 388
                 56899*****************************************998876555544.899999********************************** PP

         OEP 106 lrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                   ++va++  q++++ +  +++++  k a+++++la+ar +aG    + v  a+   lq r++ +    q+++a  qL  +lg
  CTQ29056.1 389 AVNQVAKTASQVETLMAKSQQQQQVEKDAQRVVDLAQARMAAGILPGSRVSMAKLPALQERITALRLHGQWIDASIQLTSALG 471
                 ********************************************999779999999999999999999999999999988876 PP

>> Autoind_bind  Autoinducer binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   9.1e-06     0.082      89     131 ..     340     382 ..     326     399 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.1e-06
                   HHHHHHHHTT-SEEEEEEEEETTSSEEEEEEEESSSSCCHHHH CS
  Autoind_bind  89 rfldeardfGlrsGltvpvhgprgrlaalslageerdldaaea 131
                    f + a++ G+++Glt+p+++++   a l +a+ + +l+ a+ 
    CTQ29056.1 340 LFRHSAQQMGVTAGLTLPIFDSGRLNANLDIASAQNSLSIAQY 382
                   68899************************99999888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1504  (0.0838864); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 3642.84
//
Query:       CTQ29057.1  [L=61]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 532.65
//
Query:       CTQ29058.1  [L=464]
Description: cryptic phospho-beta-glucosidase B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     8e-154  512.4   0.0     9e-154  512.2   0.0    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1
    0.00013   21.5   0.0    0.00026   20.5   0.0    1.4  1  Cellulase      Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  512.2   0.0    1e-157    9e-154       3     452 ..       2     459 ..       1     460 [. 0.97

  Alignments for each domain:
  == domain 1  score: 512.2 bits;  conditional E-value: 1e-157
                    GGS-TT-EEEEE--HHHHH--TTSTT---BHHH.....HHHHHGGGSTTS--.-SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTS.TT- CS
  Glyco_hydro_1   3 etfpedFlwgaataayqiEGawnedGkgesiwD.....tftetpgkvlegsn.gdvacdsYhrykeDvallkelgvkayrfSisWpRilPkG.ege 91 
                    +tfp+dFlwg+ataa+q+EGa+ edGkg+s++D     +f e  ++v  +s  +dva+d+Yhry+eD+al++e+g++++r+Si+W+Ri P+G ++e
     CTQ29058.1   2 KTFPADFLWGGATAANQVEGAYLEDGKGLSTSDvqphgVFGEVVERVPGDSGiKDVAIDFYHRYPEDIALFAEMGFNCLRVSIAWTRIYPNGdDAE 97 
                    79*******************************999999***********999******************************************* PP

                    --HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH.H-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHTSS-STT-S-TT CS
  Glyco_hydro_1  92 inekGlayYerLidelleagieplvTlyHwdlPqaLqd.eGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgyltgefaPgkkdl 186
                    +ne+Gla+Y++L+de+++++i+plvTl H+++P aL + +Ggw +r++i  f++ya++vf+r+++kvklwlTfnE+n++ +++ + + ++ g +++
     CTQ29058.1  98 PNEAGLAFYDKLFDEMAKHNITPLVTLSHYEMPWALVKnYGGWGSREVIGFFERYARTVFSRYKNKVKLWLTFNEINMSLHAPMTGVGLPAG-SSK 192
                    ************************************999****************************************9999888888888.888 PP

                    THHHHHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHH.HHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG..S----HHHHH CS
  Glyco_hydro_1 187 eaayeaaHnlllaharavklykevaqkgkigivlnlslaeplseseedk.eaaeraleflngwfldpvvkGdYpeemkellrergalpeiteedke 281
                     ++y+a+H++l+a+a avk+++e +++gkig++l   l++pls ++ed+ e+ +++++++  +f d++ +G+Yp +m++++r++g++++it++d e
     CTQ29058.1 193 GEVYQAIHHQLVASALAVKACHELVPEGKIGNMLLGGLMYPLSCKPEDVfETLQENRSWQ--FFGDVQARGAYPGYMQRYFRDNGITLTITDADRE 286
                    89********************************************************99..********************************** PP

                    HHTT--SEEEEEEEEEEEEEE--...-STT---SSGGGGG-SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE----EE-BSSS.HHH-- CS
  Glyco_hydro_1 282 llkgkadflglnyYtsrlvknkeseeaslskteekkleeevdpslpktdigwiiepeglrkllellkkeYqklpiyiteNGlgakdeiee.gkveD 376
                     lk ++df++++yY++ +v+++e   a  ++++ + l++  +p+l ++++gw+i+p glr+ll++l ++Yq +p++i+eNGlgakd++e  g+++D
     CTQ29058.1 287 ALKTTVDFISFSYYMTGCVTADE---ALNQQARGNILSMVPNPHLASSEWGWQIDPLGLRTLLNVLWDRYQ-KPLFIVENGLGAKDKVEAdGSIND 378
                    ********************999...88899999999**********************************.9**************9988***** PP

                    HHHHHHHHHHHHHHHHHHHTT--EEEEEEE-SB----GGGT.TSEE--SEEEET....TTTTEEEE-HHHHHHHHHHH-SS CS
  Glyco_hydro_1 377 dkRidYlkehlnevkkaiedgvdlkgYvawsllDnfewaeg.yskrfGlvyvdr....netleRtpkkSakwykeviekng 452
                    d+Ri+Yl++hl+++++ai+dgv+l g+++w+ +D+++++++  skr+G++yvdr    + tl R +kkS+ wykevi+++g
     CTQ29058.1 379 DYRISYLNDHLVQAREAIDDGVELMGFTSWGPIDLVSASKAeLSKRYGFIYVDRhddgTGTLARSKKKSFGWYKEVIASRG 459
                    ****************************************99************9988899****************9875 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.9e-08   0.00026      25     132 ..      67     174 ..      53     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.9e-08
                 HHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS.TTT.CSSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTT CS
   Cellulase  25 alidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHse.egw.ltkadgnssedtaeeffkklwtqiAerykknde 121
                 + i++++++gfn++R+ ++w ++ +n++d + +e+ l+ ++++ + + ++++  ++ + ++   w l+k+ g   + +   ff+ + + + +ry kn+ 
  CTQ29058.1  67 EDIALFAEMGFNCLRVSIAWTRIYPNGDDAEPNEAGLAFYDKLFDEMAKHNITPLVTLSHYeMPWaLVKNYGGWGSREVIGFFERYARTVFSRY-KNK- 163
                 568899***************************************************9888777744455445556668899************.443. PP

                 TEEEESSSS-- CS
   Cellulase 122 vvifelmNEPh 132
                 v ++ ++NE +
  CTQ29058.1 164 VKLWLTFNEIN 174
                 33444677765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3841.58
//
Query:       CTQ29059.1  [L=620]
Description: fused beta-glucoside-specific PTS enzymes: IIA component; IIB component; IIC component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-49  166.8   0.0    3.3e-49  165.8   0.0    1.5  1  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
    6.7e-23   81.2  29.7    6.7e-23   81.2  29.7    1.9  2  PTS_EIIC         Phosphotransferase system, EIIC
    7.1e-15   54.2   0.3    1.2e-14   53.5   0.3    1.4  1  PTS_EIIB         phosphotransferase system, EIIB
      2e-05   24.3   0.0    0.00017   21.3   0.1    2.4  3  Biotin_lipoyl_2  Biotin-lipoyl like


Domain annotation for each model (and alignments):
>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.8   0.0   7.5e-53   3.3e-49       2     127 .]     473     598 ..     472     598 .. 0.98

  Alignments for each domain:
  == domain 1  score: 165.8 bits;  conditional E-value: 7.5e-53
                 S-----SEEEEEGGGSSSHHHHT-TTSEEEEEEE-SSEEEES--EEEEE--SSSSEEEEESSSS-EEEEE-SSSTTTTTTTTEEES----SEE-SEEEE CS
  PTS_EIIA_1   2 eilspvsGevvpleevpDevfaekmlGdGvaiepsegkvvapvdGkvekvfptkHaigiktddgvevlihiGidtvklkgegFellvkegdkVkagdkl 100
                 +il+p+sG v++le+vpD +fa+++lG+Gvai+p  g+v+ap+ G+v ++f+tkHaig+++d+g+e+lih+Gidtvkl+g +F+++vkegd+V+agd+l
  CTQ29059.1 473 DILAPMSGSVIALEQVPDSTFASGLLGKGVAIIPAVGQVIAPFPGEVASLFQTKHAIGLQSDSGIELLIHVGIDTVKLDGVPFTAHVKEGDRVQAGDLL 571
                 699************************************************************************************************ PP

                 EEE-HHHHGGGSS---EEEEESSGGGX CS
  PTS_EIIA_1 101 vevdleaikkagystttpvvvtnseev 127
                 +e+d +ai +agy+++tp++++ns+++
  CTQ29059.1 572 IEFDRQAILDAGYDLATPIIISNSDDY 598
                 ***********************9975 PP

>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2  29.7   1.5e-26   6.7e-23       2     324 .]     109     393 ..     108     394 .. 0.79
   2 ?   -1.8   0.3      0.28   1.2e+03     204     234 ..     439     469 ..     399     505 .. 0.67

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 1.5e-26
    PTS_EIIC   2 dgfmlpiplliagGillglgnlpnssdlkglss.lgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvl 99 
                  +f++ i +  a G+l gl  l             g+ t  +++++i  +a++a f + pl++++++++++  gg+++  + ++ +l ++  ++a+++ 
  CTQ29059.1 109 GIFTPFIGVMAATGLLKGLLALA---------VtCGWLTPEQGTYKIWFAASDALFFFFPLFLGYTAGKKF--GGNPFISMVIGGALTHPLMIQAFEAS 196
                 68*******************22.........22689999999****************************..******55555555555543333333 PP

    PTS_EIIC 100 llaagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggs 198
                   +     +a  ++lgi+++  ++  ++i+ +la +++ ++e+     LP+s   f+++++   + + +++lv+g+v  +++ ++ +g       +++ 
  CTQ29059.1 197 QAPG----AAVEHFLGIPVTFINYSSSVIPIILASWVCCWLERKSNALLPSSMKNFFSPAICLAVVVPLTFLVIGPVATWLSHLLANGYQF----IYAF 287
                 3333....56899******************************777778888777777777777777777777777777777777777666....**** PP

    PTS_EIIC 199 gsllgvlifgflerllipfGlHhafiapfwftsa....ggslaianqqlygagkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllgsaal 293
                  ++l+++++g+++++ ++fGlH ++++ ++ ++     +  l+                       +++ ++ a +++++ +fl+ + ++++ l + a+
  CTQ29059.1 288 APWLAGAVLGAMWQVCVIFGLHWGLVPLMINNMTvlghDSMLP-----------------------IILPAVIAQVGAVLGIFLATRDARQRVLAGSAF 363
                 ******************************9998433333333.......................444444444444444566777888888888889 PP

    PTS_EIIC 294 tpflfGItepleFgfpfvlnlllfipallag 324
                  ++lfGItep+++g+ + l+++ fi  ++ag
  CTQ29059.1 364 SAGLFGITEPAIYGLTLPLRRP-FIFGCVAG 393
                 99********************.77766665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.28
    PTS_EIIC 204 vlifgflerllipfGlHhafiapfwftsagg 234
                 +  f +++ l  + Gl  a+ ap ++t+a  
  CTQ29059.1 439 GVAFVLACVLTFFAGLPRASAAPGAVTVAPA 469
                 3344455555555677777777777666643 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.3   2.7e-18   1.2e-14       1      34 []       8      41 ..       8      41 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 2.7e-18
                HHHHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB  1 keIldalGGkdNIesvthCaTRLRltlkDaskvd 34
                ++Il+ +GGk+NI+s+ hCaTRLR++lkD+ k+d
  CTQ29059.1  8 QDILNRVGGKENIVSLVHCATRLRFKLKDNGKAD 41
                68******************************98 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.1   4.7e+03       5      17 ..     511     523 ..     509     525 .. 0.77
   2 !   21.3   0.1   3.9e-08   0.00017      17      41 ..     558     582 ..     555     583 .. 0.92
   3 ?   -1.2   0.0      0.41   1.9e+03      24      33 ..     609     618 ..     607     620 .] 0.82

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
  Biotin_lipoyl_2   5 IaapvsGrVaqln 17 
                      + ap++G Va+l+
       CTQ29059.1 511 VIAPFPGEVASLF 523
                      5589999999986 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 3.9e-08
  Biotin_lipoyl_2  17 nVkdGqrVkaGdvLaelDsralqla 41 
                      +Vk+G+rV+aGd+L+e D +a ++a
       CTQ29059.1 558 HVKEGDRVQAGDLLIEFDRQAILDA 582
                      7******************998765 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.41
  Biotin_lipoyl_2  24 VkaGdvLael 33 
                      V+aG+ L+  
       CTQ29059.1 609 VEAGQPLLSV 618
                      9******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4508.63
//
Query:       CTQ29060.1  [L=277]
Description: transcriptional antiterminator of the bgl operon [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-43  147.2   2.5    3.3e-21   75.4   0.0    2.2  2  PRD              PRD domain
    2.3e-23   81.9   0.1    4.2e-23   81.0   0.1    1.4  1  CAT_RBD          CAT RNA binding domain
  ------ inclusion threshold ------
      0.078   13.3   0.4       0.13   12.6   0.4    1.3  1  Pepdidase_M14_N  Cytosolic carboxypeptidase N-terminal domain


Domain annotation for each model (and alignments):
>> PRD  PRD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   5.6e-25   3.3e-21      14      89 ..      87     161 ..      75     162 .. 0.93
   2 !   70.7   1.7   1.6e-23   9.5e-20       1      89 [.     179     271 ..     179     272 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 5.6e-25
                 -BTTCHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTST--HHHHHHHHHHHHH CS
         PRD  14 kleddslyerLitHlkfaieRlkegitienplleeikekypkefeiakeileeleeeldielpedEiaylalhfls 89 
                 kl ++sly+ L++H++faieR k+gi + n ll+eik+ ypkef++ +e+ +++ ++l++el edE++++alh+  
  CTQ29060.1  87 KL-QESLYITLTDHCHFAIERQKKGIALRNVLLWEIKRLYPKEFALGQEARAIIAKRLGVELAEDEAGFIALHLVT 161
                 67.89********************************************************************975 PP

  == domain 2  score: 70.7 bits;  conditional E-value: 1.6e-23
                 HHHHHHHHHHHTS-B.TTCHHHHHHHHHHHHHHHHHHTT...--HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTST--HHHHHHHHHHHHH CS
         PRD   1 eeiiekiekklqikl.eddslyerLitHlkfaieRlkeg...itienplleeikekypkefeiakeileeleeeldielpedEiaylalhfls 89 
                 +ei++ ++++lq+++ e++ +y+r++tHlkf+ +R+  +   ++ + +l + +k++y k+ ++a+ ++++l+++++ +l+ +Ei++la+h+++
  CTQ29060.1 179 QEILQLVKYQLQLNYdEESLSYQRFVTHLKFFAQRMLTRtvvEDDDVSLHSAVKDNYAKAWKCAETVATHLQKQYQRSLTTEEIMFLAIHIER 271
                 689********************************999999999999999*****************************************97 PP

>> CAT_RBD  CAT RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.1   7.1e-27   4.2e-23       1      54 [.       1      54 [.       1      55 [. 0.98

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 7.1e-27
                -EECEEECTTEEEEE-C.CSEEEEE-TTTTTT--TTSEEETTTSSEEEEE-SHC CS
     CAT_RBD  1 mkIkKvLNNNvvlakdekgkEvilmGkGIGFgkkkgdeideekieKvFvlkdee 54
                m+I KvLNNNvv++ de+ +E ++mG+G++F+k++gd++d++kieKvF l+++e
  CTQ29060.1  1 MQIAKVLNNNVVVVLDEHRREQVVMGRGLAFQKRPGDVLDDSKIEKVFALQSDE 54
                9*************************************************9986 PP

>> Pepdidase_M14_N  Cytosolic carboxypeptidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   2.2e-05      0.13      19      86 ..     185     259 ..     170     272 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
  Pepdidase_M14_N  19 eevelsirkD......leksehrqWFyFrvsgar.gekltftienagkasypkgwkgykvvasydrkeWrrvdte 86 
                       +++l+++ D      ++  +h ++F  r+   +  e+  ++++ a k  y+k+wk  ++va + +k+++r  t+
       CTQ29060.1 185 VKYQLQLNYDeeslsyQRFVTHLKFFAQRMLTRTvVEDDDVSLHSAVKDNYAKAWKCAETVATHLQKQYQRSLTT 259
                      467888888855554444449999999999887778888999999*************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2020.24
//
Query:       CTQ29061.1  [L=454]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-58  199.6   5.4    1.2e-58  199.4   5.4    1.0  1  OprB      Carbohydrate-selective porin, OprB family


Domain annotation for each model (and alignments):
>> OprB  Carbohydrate-selective porin, OprB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.4   5.4   6.7e-63   1.2e-58       3     378 .]      83     454 .]      81     454 .] 0.95

  Alignments for each domain:
  == domain 1  score: 199.4 bits;  conditional E-value: 6.7e-63
        OprB   3 dlaylgrlqeefdadLaklagrvdgleartsaler.qgfslttk....ltgevlfavtevfggkkqnrvrLtelsftqkffddrLdirlgrgnvndefy 96 
                  lay +++ ++f  dL++  g+  ++ +  ++++r +  +lttk    ++++     +e +gg+    +rL  l+f  +f+d rL+ r+g +n  + f 
  CTQ29061.1  83 HLAYIDQVSLTFTQDLERWTGI-PDARLEGNIVNRnHDDNLTTKrlqdPRVSFNDLSQESWGGG--SITRLGWLTFARSFDDRRLTWRIGMMNKVQTF- 177
                 699*******************.********988726789999999888888889999999999..6*****************************99. PP

        OprB  97 yasptgtqflnlsfcggpnnnvsvdslayywPvaslGervrynptpelaaqgGvfddnpttlnpygslsgftfigsggtgigvpvelgwalnsggngll 195
                  +    ++f+ l+ cgg + n   +  + +w++ ++G++++y++tp++++ gGv ++np+       ++ ++++++g++gi++p+e++ +   +  ++l
  CTQ29061.1 178 -DQIIPCDFQLLTQCGGKSAN---SLTWNNWNIHTWGTTLEYKLTPTVTLKGGVMEQNPQATAR---SHAWSWSTKGSKGILLPMEIETR---PLINGL 266
                 .999*****************...66679***********************************...***********************...5599** PP

        OprB 196 pGkykagaqlntapfddvrldltyvnaylttlantnfseladgkqgnslgveqaltradg..srgltlfarasvadgnteiwtygvslGlpdlGpfdgR 292
                 pG y +g  +++ap+ d++ + ++  + +    + +    +d+ + +++g+ q++tr+ +   rg++++ ++s +d++ + +  +v +  ++ G fd+R
  CTQ29061.1 267 PGAYNLGVVWTNAPQSDLYSGKSGGAGAT----DPQGYAEHDSTWFMYAGLNQQITRHADdpLRGMSVSLSGSLSDQRSNYIHSAVAASMRYRGLFDAR 361
                 ********************988665554....8999999******************99999************************************ PP

        OprB 293 pgDtlGiaagvqplssgaranqldtalvtgi.......glpnqgteyvlElfYkyqltdnlsitPdlqyiinPggntdnanaaviGlrttftF 378
                 p D++G++     +ss+   nq+ +++ +g        ++p++g++++ El+Y+ +   +l ++P+lqy ++Pgg  + ++a+v+  +t +tF
  CTQ29061.1 362 PEDWIGFGLTWIDMSSHYARNQRYMNQISGAtdyndpaYQPVAGHSLNGELYYRFRPVSWLELQPGLQYWHRPGGVAQTQDAWVVEWKTVVTF 454
                 **************************999999*****************************************************99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3522.34
//
Query:       CTQ29062.1  [L=310]
Description: tRNA-dihydrouridine synthase C [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-89  300.5   0.0    1.4e-89  300.2   0.0    1.0  1  Dus           Dihydrouridine synthase (Dus)
  ------ inclusion threshold ------
      0.023   14.2   0.0      0.039   13.4   0.0    1.4  1  His_biosynth  Histidine biosynthesis protein
      0.073   12.9   0.0       0.15   11.9   0.0    1.5  1  ATP-synt_D    ATP synthase subunit D


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.2   0.0   2.4e-93   1.4e-89       2     283 ..       5     286 ..       4     307 .. 0.92

  Alignments for each domain:
  == domain 1  score: 300.2 bits;  conditional E-value: 2.4e-93
                 E---TTTS-HHHHHHHHHTT-SSEEEEEEEE-SSS---HHHHHHH-GGGGGT......SCEEEEEE-S-HHHHHHHHHHHHHTT-SCEEEEESSTTEEE CS
         Dus   2 laPmagvtdlpfRelvrefgataLvvtemvtakaivreekvrirmlseeeee......tplavQlggsdpallaeaAklvadlgadeIdlNvGCPskkv 94 
                 laPm+gv+d+ +Rel++e+++++L++te++++ +++ + k+++r ++e++++      t ++vQl+g+ p++lae+A+++++lg++++dlN+GCPsk v
  CTQ29062.1   5 LAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKSFYRLCPELHHQsrtpsgTRVRVQLLGQYPEWLAENAARAVALGSWGVDLNCGCPSKLV 103
                 9**************************************************99*9**99**************************************** PP

                 TTEEEGGGGGGSHHHHHHHHHHHHCCSS..S-EEEEEESESSTTTC.HHHHHHHHHHCT-SEEEEESSECCCTT-C.G--CHHHHHHHHH-SS-EEEES CS
         Dus  95 trggaGaaLlrkpdlvaqivkavvkave..iPvtvkirigiddeeenalelakiveaaGaqaltvHgRtraqnyeg.tadweaIkevkqavsipviaNG 190
                 +++g+Ga+Ll++p+l+++  ka+++av+  +Pvtvk+r+g+d+ e+  +e+a++v++aGa +l+vHgRt++++y++ +++w+aI e++q+++ipv+aNG
  CTQ29062.1 104 NGSGGGATLLKDPELIYRGAKAMREAVPehLPVTVKVRLGWDSGER-RFEIADAVQQAGASELVVHGRTKEDGYKAeRINWQAIGEIRQRLTIPVVANG 201
                 ****************************99************6666.9*************************************************** PP

                 S--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHHHHHHHHSC------HHHHHHHHHHHHHHCHHTTCCCCCCHHHHHHHHHHHHHHTTTTC CS
         Dus 191 dIkdaedaqaileetGadgvmigrgalgnPwlfaestavktgeaepapplaeeaeiveehlkkleeelgedkglrkirkhlawylkglkkaae 283
                 +I+d+++aq++++ tG+d vmigrgal+ P+l++    +  +++ep++p + ++  + +++++le++   d+gl++++++++w+ +  k+  e
  CTQ29062.1 202 EIWDWQSAQDCMAVTGCDSVMIGRGALNVPNLSR---VI--KYNEPRMP-WPQVVQLLQKYTRLEKQG--DTGLYHVARIKQWLGYLRKEYTE 286
                 *********************************8...33..36899999.889999999********9..9************9885333333 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.5e-06     0.039      32     112 ..     151     234 ..     120     242 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.5e-06
                   HHHHHHHHHHT-SEEEEEEHHHHC..TTHHHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHH.CT-SEEEESHHHHH-THHH CS
  His_biosynth  32 velakryeeegadelhvvDldaak..egreanldlveeiaeevfipvqvGGGIrsledveelle.agadkviigtaavknpeli 112
                   +e+a + +++ga el+v   +     + +++n +++ ei+++++ipv   G I + +++++ +   g+d v+ig  a++ p+l 
    CTQ29062.1 151 FEIADAVQQAGASELVVHGRTKEDgyKAERINWQAIGEIRQRLTIPVVANGEIWDWQSAQDCMAvTGCDSVMIGRGALNVPNLS 234
                   678888888999999888766544447888999999999999999999999999999999988746899999999999988876 PP

>> ATP-synt_D  ATP synthase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.4e-05      0.15     103     145 ..     258     302 ..     228     307 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.4e-05
                 ...S.SSTSSSSSSSSTCHHHHHHHHCHHHHHHHHHHHHHHHHHH CS
  ATP-synt_D 103 e..ksdstelygllrtgaqldeavealrellellvelasletsle 145
                 +  k+++t ly ++r +++l  ++++++e+l l+ e+  l+ts e
  CTQ29062.1 258 RleKQGDTGLYHVARIKQWLGYLRKEYTEALTLFNEIRALQTSAE 302
                 14578899**********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2583.43
//
Query:       CTQ29063.1  [L=132]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-29  102.3  10.3    1.3e-29  102.0  10.3    1.1  1  LrgA      LrgA family
  ------ inclusion threshold ------
      0.019   14.5   5.0      0.024   14.1   5.0    1.2  1  LrgB      LrgB-like family
        6.3    6.1  11.8        1.7    8.0   3.6    2.7  3  MarC      MarC family integral membrane protein


Domain annotation for each model (and alignments):
>> LrgA  LrgA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0  10.3   2.2e-33   1.3e-29       2      92 ..      23     113 ..      22     115 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 2.2e-33
        LrgA   2 llGellsrllplpiPgsviGlllLlllLltkivklekveeaadfllkhlallFvPagvgvmeyldllkaellailvalvvstllvlvvtgl 92 
                 ++G +++ llp++iPgs+iG+l+L++lL+++i++ ++v++++++l++++allFvP+gvgvm+y+dll+a+l ++++++++stl+v+vv+++
  CTQ29063.1  23 YAGIFIAGLLPITIPGSIIGMLILFVLLALQIMPPQWVNPGCNILIRYMALLFVPIGVGVMQYWDLLRAQLGPVVISCAISTLVVFVVVSW 113
                 68999***********************************************************************************998 PP

>> LrgB  LrgB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   5.0   4.1e-06     0.024      24     108 ..      40     124 ..      14     126 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.1e-06
        LrgB  24 lvaivliillllllgisyetYke.gakllsllLgpatVaLAvpLYkqrellkknllaillgllvgslvsllsavllakllglseel 108
                 ++++ li+++ll+l+i   ++ + g ++l   +    V ++v + ++++ll+++l ++++++++++lv ++++ + ++l++ ++++
  CTQ29063.1  40 IIGM-LILFVLLALQIMPPQWVNpGCNILIRYMALLFVPIGVGVMQYWDLLRAQLGPVVISCAISTLVVFVVVSWSSHLVHGERKV 124
                 3444.5555556666655555544******************************************************99988876 PP

>> MarC  MarC family integral membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.6   0.00028       1.7      42      91 ..       9      58 ..       2      62 .. 0.85
   2 ?    2.5   0.2     0.013        79     175     195 ..      63      83 ..      59      86 .. 0.90
   3 ?    0.0   0.0     0.077   4.6e+02     145     168 ..      95     118 ..      87     129 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00028
        MarC 42 kasilallillvfllfGelilklfgisidalkiaGgillfliaidmlkak 91
                 + + a++++ + l++G  i  l+ i+i++  i+  il +l a++++ ++
  CTQ29063.1  9 WQYLRAFVLIYACLYAGIFIAGLLPITIPGSIIGMLILFVLLALQIMPPQ 58
                567889************************87777777788999999887 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.013
        MarC 175 ginaleRlmGllLvalavqli 195
                 g n+l R m+ll v ++v ++
  CTQ29063.1  63 GCNILIRYMALLFVPIGVGVM 83 
                 89***************9876 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.077
        MarC 145 avvlaillaalitllilllsslil 168
                  vv++ ++++l+++++++ ss ++
  CTQ29063.1  95 PVVISCAISTLVVFVVVSWSSHLV 118
                 577788888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1143.85
//
Query:       CTQ29064.1  [L=231]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-79  266.4  16.9    1.7e-79  266.3  16.9    1.0  1  LrgB      LrgB-like family
  ------ inclusion threshold ------
       0.15   10.9   1.0       0.21   10.5   1.0    1.2  1  DUF677    Protein of unknown function (DUF677)
        2.2    6.5  14.0        6.8    4.9  14.0    1.7  1  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> LrgB  LrgB-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.3  16.9   2.9e-83   1.7e-79       1     213 [.      12     224 ..      12     225 .. 0.99

  Alignments for each domain:
  == domain 1  score: 266.3 bits;  conditional E-value: 2.9e-83
        LrgB   1 TllaYllakalykklkkpllnPvlvaivliillllllgisyetYkegakllsllLgpatVaLAvpLYkqrellkknllaillgllvgslvsllsavlla 99 
                 Tl++++la++l +++k+pllnP+lva+v+ii +lll+gisye+Y++g+k+l+ lL+pa+VaLA+pLY+q++++++++++i++ +++gs+v++++   +a
  CTQ29064.1  12 TLIVFFLARKLAARFKFPLLNPLLVAMVVIIPFLLLTGISYERYFAGSKVLNDLLQPAVVALAFPLYEQLHQIRARWKSIITICFIGSCVAMITGTTVA 110
                 9************************************************************************************************** PP

        LrgB 100 kllglseelllsllpkSvTtpiAmevseelgGipsltavlviltGilGallgelllkllrikdpvarGlalGtashaiGtakalelgeeagafsslamv 198
                  l+g+++++++s+lpkSvTtpiAm+vs ++gGip++ av+vi+ GilGa++g++ll+l++i+++++rGl++Gtasha+Gta+++el+ ++gafssla+v
  CTQ29064.1 111 LLMGATPQIAASILPKSVTTPIAMAVSGSIGGIPAISAVCVIFVGILGAVFGHTLLNLMHIRTKASRGLSMGTASHALGTARCAELDYQEGAFSSLALV 209
                 *************************************************************************************************** PP

        LrgB 199 laGiltallaplllk 213
                 l+Gi+t+l+ap+l++
  CTQ29064.1 210 LCGIITSLMAPFLFP 224
                 ***********9986 PP

>> DUF677  Protein of unknown function (DUF677)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.0   3.4e-05      0.21     170     221 ..      78     133 ..      64     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.4e-05
      DUF677 170 dkklrnik.tkraisnvvfvaafvaVlvlSvvlaalaapavva...vagalavPle 221
                  ++l++i+  ++ i ++ f+++ va +    v+  ++a + +a   +  ++++P+ 
  CTQ29064.1  78 YEQLHQIRaRWKSIITICFIGSCVAMITGTTVALLMGATPQIAasiLPKSVTTPIA 133
                 57888896369***************************998764445566777775 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  14.0    0.0011       6.8      14     186 ..       5     180 ..       2     188 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0011
     DUF2070  14 wkvsllliillalligllaflssk.lfgillfglpalvaflltlpvlrilggr...ltykrslflalltelivviisllaillsall...qalvllalv 105
                 +++sl l++++ +l+  la ++++ l      + p+lva+++  p+l ++g+    +    +++  ll   +v++ + l   l  +    +++++ +++
  CTQ29064.1   5 IWWSLPLTLIVFFLARKLAARFKFpL------LNPLLVAMVVIIPFLLLTGISyerYFAGSKVLNDLLQPAVVALAFPLYEQLHQIRarwKSIITICFI 97 
                 55788899999999999988888543......4444444444444444444332223344445555555555555554444444444677888888888 PP

     DUF2070 106 lslalvfalrllvlvavsdesllkavlpaliqpllailllvly..fspesfllllllslifalavylfivvvdrplkrnlgvs 186
                  s+++++  +++ l++ +  ++  ++lp ++++ +a++++  +  ++  s++ ++++ ++ a++ + ++ ++ +++k++ g+s
  CTQ29064.1  98 GSCVAMITGTTVALLMGATPQIAASILPKSVTTPIAMAVSGSIggIPAISAVCVIFVGILGAVFGHTLLNLMHIRTKASRGLS 180
                 89888888888888888888999999999988888888888887877788888888888888888888888888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 1956.51
//
Query:       CTQ29065.1  [L=294]
Description: cytidine/deoxycytidine deaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-43  147.2   0.9    1.2e-42  145.3   0.1    2.1  2  dCMP_cyt_deam_2  Cytidine and deoxycytidylate deaminase zinc-
      7e-13   48.3   0.0    8.2e-11   41.7   0.0    2.2  2  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
  ------ inclusion threshold ------
       0.19   12.2   0.0       0.34   11.4   0.0    1.4  1  DUF5447          Family of unknown function (DUF5447)
        0.2   11.4   0.0       0.38   10.5   0.0    1.5  1  MafB19-deam      MafB19-like deaminase
       0.21   11.5   0.0       0.34   10.8   0.0    1.3  1  Pput2613-deam    Pput_2613-like deaminase


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_2  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.24   8.6e+02      72     105 ..      78     113 ..      12     125 .. 0.45
   2 !  145.3   0.1   3.3e-46   1.2e-42       1     132 [.     157     276 ..     157     277 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.24
                      EETTS-EEEEE-B-..-TTSTT-B-HHHHHHHHHHH CS
  dCMP_cyt_deam_2  72 vtkdgkvyaGsyiE..saAfNpsLpPlqaAlvalvl 105
                         +g++y G  +E   a    + ++ q+A+ ++ l
       CTQ29065.1  78 RGVSGRWYFGGNMEflGATMQQTVHAEQSAISHAWL 113
                      223466666666664345556666666666666666 PP

  == domain 2  score: 145.3 bits;  conditional E-value: 3.3e-46
                      HHHHSTT--SGGGGTS-S...-BTS----------........S-HHHHHHHHHHTT-B-TTT---EEEEEEETTS-EEEEE-B--TTSTT-B- CS
  dCMP_cyt_deam_2   1 LsslLPhsFgPkdLlskeevpllleerdnklalkaeeeaeeekddelkeaAlaaanasyapyskcpsGvaLvtkdgkvyaGsyiEsaAfNpsLp 94 
                      L+++LP++FgPkdL++k+   ll++e+d+++ ++          d+l++aA++aan+ +apys++psGvaL++kdg++++Gsy+E+aAfNp+Lp
       CTQ29065.1 157 LEHYLPNAFGPKDLEIKT---LLMDEQDHGYPVSG---------DALTQAAIQAANRCHAPYSHSPSGVALELKDGTIFSGSYAENAAFNPTLP 238
                      789**************9...***********997.........89************************************************ PP

                      HHHHHHHHHHHTT--GGGEEEEEEEEETT-SS-SHHHH CS
  dCMP_cyt_deam_2  95 PlqaAlvalvlggkefeeieravLvekedakvsqeata 132
                      Plq Al+ l l+g ++  i+ra+L+ek+da++ q++++
       CTQ29065.1 239 PLQGALNLLSLNGYDYPAIQRAILAEKADAALIQWDAT 276
                      **********************************9987 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   2.3e-14   8.2e-11      14      92 ..      60     139 ..      47     143 .. 0.84
   2 !    4.5   0.0    0.0087        31       7      48 ..     191     233 ..     187     272 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 2.3e-14
                      HHHHHH.TTTSCSEEEEEEETTEEEEEEESBHHCCTG..TTB-HHHHHHHHHHHHTSSCETTEEEEEEE--BHHHHHHHHHH CS
  dCMP_cyt_deam_1  14 aakeaq.kcsnfkVGavivkngeiistgyngepaggs..ktiHAEvnAilkaaknggsklegatlyvtlePCsmCakaiiqs 92 
                      aa  a+ + s+f+VGa+      + + g n+e+ g +  +t+HAE++Ai +a+ +g+++l    + v+++PC++C+++++++
       CTQ29065.1  60 AAACARpDLSHFNVGAIARGVSGRWYFGGNMEFLGATmqQTVHAEQSAISHAWLRGETSL--RAITVNYTPCGHCRQFMNEL 139
                      444455799*********997799999*****9887777**************9987788..99**************9987 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0087
                      HHHHHHHHHHHHH.TTTSCSEEEEEEETTEEEEEEESBHHCCT CS
  dCMP_cyt_deam_1   7 llelalkaakeaq.kcsnfkVGavivkngeiistgyngepagg 48 
                      l + a++aa++++ ++s+ + G +++ ++  i+ g   e+a  
       CTQ29065.1 191 LTQAAIQAANRCHaPYSHSPSGVALELKDGTIFSGSYAENAAF 233
                      7899******************999985566666655555544 PP

>> DUF5447  Family of unknown function (DUF5447)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.5e-05      0.34       2      37 ..      98     134 ..      97     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.5e-05
     DUF5447   2 lrlphaedcdcsvcwsrrev.akpvasrftpcaecrp 37 
                 ++  hae+ + s  w r e+  + ++ ++tpc +cr 
  CTQ29065.1  98 QQTVHAEQSAISHAWLRGETsLRAITVNYTPCGHCRQ 134
                 5678*************9983578999********96 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00011      0.38      19      86 ..      67     133 ..      56     192 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
  MafB19-deam  19 kikedkigavi..vkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCa 86 
                  ++++  +ga+   v ++  ++ + ++     + t HaE  a+  A   ++++      + v   pC+ C 
   CTQ29065.1  67 DLSHFNVGAIArgVSGRWYFGGNMEFLGATMQQTVHAEQSAISHAWLRGETS---LRAITVNYTPCGHCR 133
                  55666677765224677778888888888999*************8777777...334557888****93 PP

>> Pput2613-deam  Pput_2613-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   9.6e-05      0.34      50      99 ..     102     150 ..      91     162 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.6e-05
  Pput2613-deam  50 htearivrelslqqllGdvlvidGqyaPCssCkGkmrvaseetgakvqYt 99 
                    h e+ ++++  l+        i  +y+PC +C+  m+  ++    +++  
     CTQ29065.1 102 HAEQSAISHAWLRG-ETSLRAITVNYTPCGHCRQFMNELNSGLALRIHLP 150
                    55555555544443.3344578999************9887777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2530.18
//
Query:       CTQ29066.1  [L=80]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       123  (0.00686039); expected 358.6 (0.02)
Passed bias filter:                      118  (0.00658152); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 638.87
//
Query:       CTQ29067.1  [L=238]
Description: hypothetical protein CH1034_250195 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-17   63.0   0.0    3.6e-17   62.6   0.0    1.1  1  DUF218         DUF218 domain
  ------ inclusion threshold ------
       0.17   11.4   0.0        5.7    6.4   0.1    2.1  2  Peptidase_M64  IgA Peptidase M64


Domain annotation for each model (and alignments):
>> DUF218  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0     4e-21   3.6e-17       3     127 ..      48     181 ..      46     199 .. 0.82

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 4e-21
      DUF218   3 ivVLGaal........pllaeRldeaaelyrag...kiivsGggadedvseaeamaeylrelgvpeeailledrsrnTeenarfskellkersillVTs 90 
                  vVLG+a         ++ ++R++ a++ y+ g   ++++sG++a ++++e   m++ l++ gv++ +i+l+ ++  T +++++++++++ + ++++T+
  CTQ29067.1  48 GVVLGTAKyyrtgvinQYYRYRIQGALNAYNSGkvnYLLLSGDNALQSYNEPMTMRRDLIKGGVDPADIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQ 146
                 599*933346666789999**************7766*****98779******************88**********************5469****** PP

      DUF218  91 afHmpRalllfrkag.......aptpsaealsaseesalraalr 127
                  fH+ Ral+++ ++g       +  p       s+++ ++  lr
  CTQ29067.1 147 RFHCERALFIALHMGiqaqcyaV--P-------SPKDMWSVRLR 181
                 **************855444221..2.......11123334444 PP

>> Peptidase_M64  IgA Peptidase M64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1   0.00063       5.7      86     132 ..      19      65 ..      12      87 .. 0.83
   2 ?    2.8   0.0    0.0078        70     140     165 ..     174     198 ..     160     205 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00063
                    SBTTBTTB-B---HHHHHHHHTTS--SEEEEEES-SS--EEEETTTE CS
  Peptidase_M64  86 dafdseRyllvvenrakrdaasfapydlvivlvNtekYgGgGifnly 132
                     + +++R++  ++   + d  +  py +v v+  t+kY  +G+ n y
     CTQ29067.1  19 TVLGLDRWMSWKTAPYIYDELQDLPYRQVGVVLGTAKYYRTGVINQY 65 
                    56789**************************************9998 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0078
                    TTHHHHHHHHHHHHTT------EES- CS
  Peptidase_M64 140 syatyilvHElgHslagLadEYeyts 165
                    + +  + + E+g  +++Lad Y ++ 
     CTQ29067.1 174 D-MWSVRLREFGARFGALADLYIFKR 198
                    4.4467889*************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1942.73
//
Query:       CTQ29068.1  [L=336]
Description: methyl-galactoside transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-49  166.2  39.9    7.9e-49  166.2  39.9    1.4  2  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2      0.26   4.6e+03      85      95 ..      18      28 ..       7      32 .. 0.40
   2 !  166.2  39.9   4.4e-53   7.9e-49       1     268 []      41     325 ..      41     325 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.26
  BPD_transp_2 85 liitllllsvl 95
                  ++++ll+l+++
    CTQ29068.1 18 IYVVLLVLLAI 28
                  22222222222 PP

  == domain 2  score: 166.2 bits;  conditional E-value: 4.4e-53
  BPD_transp_2   1 gilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl...........lllallvallvgaavglllgllvlrlkvdeli 86 
                   +++n+lt++++ +i+AlG+a ++ ++ + +l++g +++l+a++aa++l+++++            ++l++l+ +++ga++gl++g+ +++l+v ++i
    CTQ29068.1  41 NLSNILTQSSVRIIIALGVAGLI-VTQGTDLSAGRQVGLAAVIAATMLQAVDNAnkvfpdmatmpIPLVILLVCAIGAVIGLINGIVIAYLNVTPFI 136
                   589********************.****************999999999999989****************************************** PP

  BPD_transp_2  87 itllllsvlvgltllllt..gitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvkll 181
                   +tl+++++++g++ l++   g++  +   s+++  ++ + al sf  + i++ al++v++v++l+++trfG +++a+g+n+eaa+++G+nv    l+
    CTQ29068.1 137 TTLGTMIIVYGINSLYYDfvGASPISGFDSHFSHFAQGFVALGSFRLSYITFYALIAVFFVWILWNKTRFGKNIFAIGGNPEAAKVSGVNVALNLLM 233
                   **************6664113333334444445555555555555555555********************************************** PP

  BPD_transp_2 182 tfvisgalAglaGallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                    +++sg++ ++ G+l a ++gs+  n g++++++aiaa+v+Gg+      g+++g+v G +i+ v++  +lt++g+++ +++++ ga++i+++
    CTQ29068.1 234 IYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGGVsfsggvGTVFGVVTGVIIFTVINY-GLTYIGVNPYWQYIIKGAIIIFAV 325
                   ********************************************************************.*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2247.61
//
Query:       CTQ29069.1  [L=506]
Description: fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-49  166.0   0.3    1.6e-28   99.9   0.0    2.5  2  ABC_tran     ABC transporter
    7.1e-10   39.2   0.0    0.00068   19.5   0.0    3.3  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00097   19.7   0.2     0.0043   17.6   0.0    2.0  2  AAA_23       AAA domain
     0.0011   18.4   0.0     0.0016   17.8   0.0    1.2  1  DUF2813      Protein of unknown function (DUF2813)
     0.0011   18.6   0.0     0.0028   17.4   0.0    1.6  1  AAA_29       P-loop containing region of AAA domain
     0.0017   17.8   2.8      0.013   14.9   0.7    2.8  2  SMC_N        RecF/RecN/SMC N terminal domain
     0.0025   18.2   0.0     0.0056   17.1   0.0    1.5  1  AAA_16       AAA ATPase domain
     0.0047   16.5   0.0     0.0089   15.6   0.0    1.4  1  AAA_27       AAA domain
     0.0054   16.7   0.1      0.025   14.5   0.0    2.2  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.026   14.3   0.3      0.079   12.7   0.1    1.9  2  AAA_15       AAA ATPase domain
       0.06   13.6   0.1       0.19   12.0   0.1    2.0  1  AAA_22       AAA domain
      0.065   11.9   0.1        4.7    5.7   0.0    2.4  3  AAA_13       AAA domain
       0.12   12.1   0.0       0.46   10.2   0.0    2.0  1  AAA_30       AAA domain
       0.18   12.1   0.1         82    3.5   0.0    3.2  3  SbcCD_C      Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.0   1.3e-31   1.6e-28       1     137 []      29     178 ..      29     178 .. 0.96
   2 !   64.0   0.1   1.6e-20     2e-17       2     136 ..     280     434 ..     279     435 .. 0.79

  Alignments for each domain:
  == domain 1  score: 99.9 bits;  conditional E-value: 1.3e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................esd 82 
                 l+nv+lk+++ +++a++GenGaGKStLlk+l g +++++G+il++gk+++    +e l++ i++++qe +l  + +v +n                ++ 
  CTQ29069.1  29 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFhSAKEALENGISMVHQELNLVLQRSVMDNmwlgryptkgmfvdqdKMY 127
                 79************************************************978999************99999999****************9888888 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++ +++ ++l+++ ++  +v     +LS  q q++++a+a+  ++k++++DEpt+
  CTQ29069.1 128 RDTKAIFDELDIDIDPRARV----GTLSVSQMQMIEIAKAFSYDAKIVIMDEPTS 178
                 8899*******999999999....*****************************96 PP

  == domain 2  score: 64.0 bits;  conditional E-value: 1.6e-20
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................. 79 
                 ++vs++l++ge+++i G  Ga  + ++++l g  ++++G+i+l gk++++    e  ++ ++ +++e   + +   l                      
  CTQ29069.1 280 RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKASGTITLHGKKINNhSANEAIKHGFALVTEErrsTGIYAYLD---Igfnslisnikkyknsvg 375
                 69**********************************************997677777888888888833222222333...255577777777777888 PP

                 .....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                       ++++ + ++++++ k  + ++   +  sLSgG +q+v + r ll++p++l+lDEpt
  CTQ29069.1 376 lldnsRMKSDTQWVIDSMRVKT-PGQHT--QIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 434
                 8776666666777777776655.33332..45*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   5.3e-07   0.00068       2      92 ..      42     116 ..      41     125 .. 0.75
   2 ?    4.6   0.0     0.019        25     253     297 ..     166     207 ..     147     212 .. 0.86
   3 !   11.0   0.0   0.00021      0.27     229     296 ..     399     463 ..     358     470 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 5.3e-07
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv.eeklssvet 92 
                  +l G Ng+GKS+LL++l ++                  + ++ + l+ +++++  ++ e  e ++++v  + +l l rs    ++l++++t
  CTQ29069.1  42 HALMGENGAGKSTLLKCLFGIY-----------------QKDSGSILFQGKEIDFHSAKEALENGISMVHQELNLVLQRSVMdNMWLGRYPT 116
                 6899**************8875.................56666666666666666677777777777777777777777777777777776 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.019
      AAA_21 253 ralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 +++   ++++ DEp ++L  k + +l++++++l+++g  ++  +H
  CTQ29069.1 166 YDA---KIVIMDEPTSSLTEKEVNHLFKIIRKLKDRGCGIVYISH 207
                 344...89**********************999999********9 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00021
      AAA_21 229 gqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296
                 gq +++ +lS G ++   +  +ll ++    +l +DEp  g++  +  ++++l+ el++++  +i+ +
  CTQ29069.1 399 GQHTQIGSLSGGNQQKVIIGRWLLTQP---EILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIIS 463
                 566788889999999955555666666...9***********************99999888885544 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.4e-06    0.0043      13      40 ..      32      60 ..      14     140 .. 0.80
   2 ?   -0.9   0.0       1.6     2e+03     114     151 ..     297     336 ..     263     390 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.4e-06
      AAA_23 13 qeidF.skgltlItGpNGaGKTTildAik 40
                +++    + + ++ G+NGaGK+T+l ++ 
  CTQ29069.1 32 VNLKVrPHSIHALMGENGAGKSTLLKCLF 60
                44444444788999************986 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.6
      AAA_23 114 i..deleqfisellgskkiilnlilflgqerfeefelkdk 151
                    +++++++++l+g++++ +  i ++g++ ++  ++++ 
  CTQ29069.1 297 LvgAKRTDIVETLFGIREKASGTITLHGKKINNHSANEAI 336
                 2445666777777777777777777776666443333333 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.2e-06    0.0016      18      67 ..      33      86 ..      15     124 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.2e-06
     DUF2813 18 Slsleen..tvLiGENaWGKSSLldALslilnveke..lyqFtlkDFhvdesee 67
                 l+++++   +L+GEN  GKS Ll+ L  i+++++   l+q ++ DFh  ++  
  CTQ29069.1 33 NLKVRPHsiHALMGENGAGKSTLLKCLFGIYQKDSGsiLFQGKEIDFHSAKEAL 86
                56666551157*********************9987225666777***765443 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.2e-06    0.0028      13      39 ..      30      56 ..      27      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.2e-06
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                d+  +++++++++ l+G++G+GKSTll
  CTQ29069.1 30 DNVNLKVRPHSIHALMGENGAGKSTLL 56
                66788999999***************8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.7     1e-05     0.013      24     206 ..      39     217 ..      21     226 .. 0.63
   2 ?   -0.8   0.1      0.65   8.3e+02     160     196 ..     426     463 ..     313     479 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-05
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE.....EEEEETTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkge.....seykingke 117
                 +s+ a++G+NG+GKs ll  +   +G        +++  +++++  ++   ++a+ ++  + ++ +++ ++ +++++r+v+ +       ++ ++ +++
  CTQ29069.1  39 HSIHALMGENGAGKSTLLKCL---FGI------YQKDSGSILFQ-GKEIDFHSAKEAL--E-NGISMVHQELNLVLQRSVMDNMWlgrypTKGMFVDQD 124
                 4589****************9...663......24455556665.3333333333333..2.2222344444455555555543332233444555666 PP

                 E-HHHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHH.HCCC-S CS
                 xxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxx RF
       SMC_N 118 vtkkevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislree.mlekad 206
                   +++ + ++ + +i+++      +LS  + +++ +a  f+      a ++++De  + L ek+v+ + +++++ +++ + ++ is++ e +++ +d
  CTQ29069.1 125 KMYRDTKAIFDELDIDIDprarvgTLSVSQMQMIEIAKAFS----YDAKIVIMDEPTSSLTEKEVNHLFKIIRKLKDRgCGIVYISHKMEeIFQLCD 217
                 67899999999999999954554455555555555554444....457799*********************9999885777778988541455555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.65
                 SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
       SMC_N 160 plyllDeidaaLDeknvkkvaellkekskn.aQfivis 196
                  + +lDe    +D     ++ +l+ e  k+   +i+is
  CTQ29069.1 426 EILMLDEPTRGIDVGAKFEIYQLIAELAKKdKGIIIIS 463
                 35577777777777777777777777666535555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.4e-06    0.0056      25      67 ..      40      83 ..      27     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.4e-06
      AAA_16 25 elvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesai 67
                ++  l Ge G GKs+l+++l+  ++kd g i+++gk  +++sa 
  CTQ29069.1 40 SIHALMGENGAGKSTLLKCLFGIYQKDsGSILFQGKEIDFHSAK 83
                66789****************99999955888999999996663 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.9e-06    0.0089      19      68 ..      32      77 ..      28      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.9e-06
      AAA_27 19 ldfsaeeadlhliyGpNEAGKstalrAisdllfGipertkdnflhdakkL 68
                ++++   +++h ++G N AGKst+l+     lfGi ++ + + l++ k++
  CTQ29069.1 32 VNLKVRPHSIHALMGENGAGKSTLLK----CLFGIYQKDSGSILFQGKEI 77
                56777899***************997....58999999999998887765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     2e-05     0.025      90     124 ..      29      64 ..       7      76 .. 0.79
   2 ?   -2.5   0.0       3.3   4.2e+03      14      42 ..     453     480 ..     448     497 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2e-05
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpele 124
                  l++++ +++  ++ +l+G+ G+GKStL++ l +  +
   CTQ29069.1  29 LDNVNLKVRPhSIHALMGENGAGKSTLLKCLFGIYQ 64 
                  55666666666899***************9987555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.3
                  ES--EEEEEEESTTTT--HHHHHHHHHHH CS
  RsgA_GTPase  14 aNvdqllivvslkepelslnlldrfLvla 42 
                  a  d+ +i++s + pel l + dr+Lv+ 
   CTQ29069.1 453 AKKDKGIIIISSEMPEL-LGITDRILVMS 480
                  55688899999998887.67788888764 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   6.2e-05     0.079      13      81 ..      28     143 ..      27     222 .. 0.64
   2 ?   -2.3   0.0       2.1   2.7e+03     324     362 ..     425     463 ..     423     464 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.2e-05
      AAA_15  13 slkdveidlsee.ltvliGkNnsGKSsilealdlFlnnkekkn.................................................kkvikie 61 
                 +l++v +++ +  +  l G+N++GKS++l+ l  + +++   +                                                 k  ++++
  CTQ29069.1  28 ALDNVNLKVRPHsIHALMGENGAGKSTLLKCLFGIYQKD---SgsilfqgkeidfhsakealengismvhqelnlvlqrsvmdnmwlgryptKGMFVDQ 123
                 5666666666667889***************96555544...233566666666677777776666666666666666666666666666654444455 PP

      AAA_15  62 kedleifeniseskdikIdv 81 
                 ++ +++++ i  + di+Id 
  CTQ29069.1 124 DKMYRDTKAIFDELDIDIDP 143
                 55555555555555555554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.1
      AAA_15 324 nvilliEEPEahLHpqaqkvlikllkelandnktQviit 362
                 + il+++EP   +   a+ ++++l++ela+++k+ +ii+
  CTQ29069.1 425 PEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIIS 463
                 578899999888888999999999999999999877776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00015      0.19       5      31 ..      39      65 ..      36     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
      AAA_22  5 agilvvtGesGtGKTtllrrlleqlde 31
                ++i +++Ge G+GK+tll+ l+  +++
  CTQ29069.1 39 HSIHALMGENGAGKSTLLKCLFGIYQK 65
                577899*************99877754 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.017        21      22      38 ..      45      61 ..      36      93 .. 0.79
   2 ?    5.7   0.0    0.0037       4.7     526     555 ..     167     196 ..     155     223 .. 0.74
   3 ?   -4.0   0.0       3.3   4.2e+03     527     562 ..     425     457 ..     423     462 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.017
      AAA_13 22 YGwNGaGKTtLSrllrs 38
                 G NGaGK+tL + l  
  CTQ29069.1 45 MGENGAGKSTLLKCLFG 61
                69********9877655 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0037
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrl 555
                   kiv++D P SSL  + +++ f  i++  
  CTQ29069.1 167 DAKIVIMDEPTSSLTEKEVNHLFKIIRKLK 196
                 679***********9877777777777664 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 3.3
      AAA_13 527 dkivviDDPvSSLDsnslfivfsliksrllkkkkak 562
                  +i ++D P    D ++ f ++ li + +   kk k
  CTQ29069.1 425 PEILMLDEPTRGIDVGAKFEIYQLIAELA---KKDK 457
                 6799999999999************9998...3333 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00036      0.46      18      52 ..      39      73 ..      32     201 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00036
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrvigl 52
                + +++l G  G+GK+t+lk l  +++++ g+++  
  CTQ29069.1 39 HSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQ 73
                668899******************99996666644 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.064        82      60      89 ..     164     193 ..     149     194 .. 0.78
   2 ?    3.4   0.1     0.069        89      25      42 ..     399     416 ..     380     418 .. 0.79
   3 ?    0.8   0.0      0.46   5.9e+02      63      78 ..     424     439 ..     419     450 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.064
     SbcCD_C  60 repalrlvfLDEAFsklDeesiatllelle 89 
                  + + ++v++DE  s+l e+ ++ l+++++
  CTQ29069.1 164 FSYDAKIVIMDEPTSSLTEKEVNHLFKIIR 193
                 5667899*****************999987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.069
     SbcCD_C  25 elsrssgtlSGGekqfla 42 
                   ++++g+lSGG +q+++
  CTQ29069.1 399 GQHTQIGSLSGGNQQKVI 416
                 46899*********9875 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.46
     SbcCD_C  63 alrlvfLDEAFsklDe 78 
                 ++++++LDE   ++D 
  CTQ29069.1 424 QPEILMLDEPTRGIDV 439
                 6899*****9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 3772.34
//
Query:       CTQ29070.1  [L=332]
Description: methyl-galactoside transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-64  218.5  12.6    1.4e-64  218.2  12.6    1.0  1  Peripla_BP_4  Periplasmic binding protein domain
    6.4e-10   38.9   1.7      4e-09   36.3   1.7    1.9  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    3.5e-07   30.7   0.1    6.8e-07   29.8   0.1    1.4  1  Peripla_BP_3  Periplasmic binding protein-like domain
  ------ inclusion threshold ------
      0.022   15.0   0.2      0.098   12.9   0.0    2.0  2  PucR          Purine catabolism regulatory protein-like famil


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.2  12.6     3e-68   1.4e-64       1     258 []      28     300 ..      28     300 .. 0.96

  Alignments for each domain:
  == domain 1  score: 218.2 bits;  conditional E-value: 3e-68
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTT....GCTT CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsd....daps 93 
                   igv+++ ++++f+s +r+++e+  k + +   +++d++nd+++Q++qi+ ++akgv++++++ vd++a+ ++++ka+ ++IpVv+f+ +    + +s
    CTQ29070.1  28 IGVTIYKYDDNFMSVVRKAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNIPVVFFNKEpsrkALDS 124
                   899**************************99999*************************************************************** PP

                   T-CEEEEEC-HHHHHHHHHHHHHHHCTTH..........EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECC.EEESTTTCHHHHHHHHHHHHH CS
  Peripla_BP_4  94 gerlayvgfdneaaGelqaeylaeklggk.........kgkvvilaGspgdpnaeeriegfrkvlkeypgikiva.evaganwdaekaqqaleallt 180
                   +++++yvg+d++++G +q++++a++++++          +++v+l+G+pg+p+ae+r+ +++k l++ +g+k+ + + ++a+wd ++a+++++a+l+
    CTQ29070.1 125 YDKAYYVGTDSKESGIIQGDLIAKHWKANpnwdlnkdgQIQYVLLKGEPGHPDAEARTTYVIKELND-KGLKTQQlQLDTAMWDTAQAKDKMDAWLS 220
                   ************************************999****************************.77777775556899*************** PP

                   ...TTT.ECEEEESSCCHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT-- CS
  Peripla_BP_4 181 ...anp.ldgilaandgmaegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGkk 258
                      a + +++++a+nd+ma+ga+eal+a +++ ++ v+g+Da peal+++k+G + +tv++d+ ++++a++ela++l++Gk+
    CTQ29070.1 221 gpnA-NkIEVVIANNDAMAMGAVEALKAHNKSSIP-VFGVDALPEALALVKSGAMAGTVLNDANNQAKATFELAKNLADGKD 300
                   *544.45***********************99998.********************************************96 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   1.7   8.9e-13     4e-09       9     208 ..      33     254 ..      26     270 .. 0.76

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 8.9e-13
                   S-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH..HHHHHHHHTT-SEEEEE-S-GG.HHHHHHHHHH.T-EEEEESS--B-T......... CS
  Peripla_BP_1   9 pqldePffldlvkgitkaakehgvdvlllaageeedla..kaidllkakgidgliiatsdts.fdditakaes.gipvialedaidap......... 92 
                    + d+ f   + k+i+k +k      ll+++ ++++ +   +id l+akg+++l i   d+     + +ka++ +ipv++ ++              
    CTQ29070.1  33 YKYDDNFMSVVRKAIEKDGKSAPDVQLLMNDSQNDQSKqnDQIDVLLAKGVKALAINLVDPAaAGTVIEKARGqNIPVVFFNKEPSRKaldsydkay 129
                   44455566667788999988776555566665555555779****************88888767788888888********995555566666666 PP

                   ........TTS-EEEE-..HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-. CS
  Peripla_BP_1  93 ........dgvPcvipd..dtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnellesh. 178
                                +  d  +++ ++++   L + g+ +  +ll+g+  +  a++r++     l + Gl  ++ ++ +   d  +a++ + + l+ + 
    CTQ29070.1 130 yvgtdskeS--GIIQGDliAKHWKANPNWDLNKDGQIQ-YVLLKGEPGHPDAEARTTYVIKELNDKGLKTQQLQLDTAMWDTAQAKDKMDAWLSGPn 223
                   655544221..222233335555556666666666666.499999999*********************************************9877 PP

                   .TT-SEEE-SSHHHHHHHHHHHHHTT.--GG CS
  Peripla_BP_1 179 .PeidaivaindeaalGavlalkkeGrlkik 208
                      i++++a+nd +a+Gav alk++++ +i+
    CTQ29070.1 224 aNKIEVVIANNDAMAMGAVEALKAHNKSSIP 254
                   77788********************987776 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.1   1.5e-10   6.8e-07      12     153 ..     164     305 ..     160     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.5e-10
                   EEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHH.HHCC-SEEEEESSCCHHHHHHHHHCCTT--TTTTEEE CS
  Peripla_BP_3  12 iafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraal.llqal.klaalPtAviaasDelAlgvlqalreaglrvPedlsv 106
                   i ++  +g+ g++ +++r+  + ++l ++gl+ ++ + +++ +++a+a ++++ +l    + ++  + via++D++A+g+++al++++ +    + v
    CTQ29070.1 164 IQYVLLKGEPGHPDAEARTTYVIKELNDKGLKTQQLQLDTAMWDTAQAKDKMDaWLSGPnANKI--EVVIANNDAMAMGAVEALKAHNKS---SIPV 255
                   5566677899999***********************9999999999888888866633333344..8**********************5...999* PP

                   EBSS--SCC.CSSSS..--EEEE--HHHHHHHHHHHHHHHHTT---S--E CS
  Peripla_BP_3 107 igfddsela.alssP..plTtvrqpleelGraaaellldllegekappeq 153
                   +g+d  ++a al+       tv  ++   ++a  el   l +g++a++ +
    CTQ29070.1 256 FGVDALPEAlALVKSgaMAGTVLNDANNQAKATFELAKNLADGKDAAAGT 305
                   ****9999988887743337999999999999999888888888877665 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.2e-05     0.098      53     102 ..      65     115 ..      58     119 .. 0.89
   2 ?   -1.2   0.0      0.52   2.3e+03      31      74 ..     260     303 ..     228     316 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.2e-05
        PucR  53 kddpealaelvrelaeagvaaLviklg.reipeelieaadelglPlielpe 102
                 ++d++++ + ++ l ++gv aL+i+l  ++    +ie a+  ++P++ +++
  CTQ29070.1  65 QNDQSKQNDQIDVLLAKGVKALAINLVdPAAAGTVIEKARGQNIPVVFFNK 115
                 569999********************636999**************98876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.52
        PucR  31 evpdiaellrggeLllttglalkddpealaelvrelaeagvaaL 74 
                  +p+  +l++ g +  t +   +++ +a  el ++la+ + aa 
  CTQ29070.1 260 ALPEALALVKSGAMAGTVLNDANNQAKATFELAKNLADGKDAAA 303
                 34455555666666666666665666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2473.34
//
Query:       CTQ29071.1  [L=340]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-32  113.8   0.1    6.3e-32  111.2   0.0    2.0  2  Peripla_BP_3   Periplasmic binding protein-like domain
    9.1e-22   77.8   0.0    1.5e-21   77.0   0.0    1.3  1  Peripla_BP_1   Periplasmic binding proteins and sugar binding
    1.6e-20   72.6   0.9    3.9e-20   71.4   0.9    1.7  1  LacI           Bacterial regulatory proteins, lacI family
      1e-17   64.6   0.0    1.6e-17   64.0   0.0    1.3  1  Peripla_BP_4   Periplasmic binding protein domain
     0.0016   18.4   0.0     0.0033   17.4   0.0    1.5  1  HTH_3          Helix-turn-helix
     0.0019   17.5   0.5     0.0053   16.1   0.5    1.8  1  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
     0.0027   18.0   0.1     0.0081   16.5   0.1    1.8  1  HTH_31         Helix-turn-helix domain
     0.0089   15.8   0.9       0.31   10.7   0.2    2.2  2  Sigma54_DBD    Sigma-54, DNA binding domain
  ------ inclusion threshold ------
       0.01   15.5   2.6      0.086   12.6   0.1    2.7  3  HTH_38         Helix-turn-helix domain
      0.013   15.5   0.1      0.028   14.5   0.1    1.6  1  HTH_7          Helix-turn-helix domain of resolvase
      0.019   15.1   0.0      0.044   13.9   0.0    1.6  1  Trp_repressor  Trp repressor protein
      0.027   14.3   0.1      0.081   12.7   0.1    1.7  1  HTH_23         Homeodomain-like domain
      0.038   13.8   0.0       0.23   11.3   0.0    2.3  2  HTH_IclR       IclR helix-turn-helix domain
      0.055   13.0   1.0       0.14   11.8   0.1    2.2  3  HTH_24         Winged helix-turn-helix DNA-binding
        0.1   13.1   0.0        0.2   12.1   0.0    1.5  1  HTH_26         Cro/C1-type HTH DNA-binding domain
       0.11   12.3   0.2       0.27   11.1   0.2    1.6  1  TetR_N         Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.72   8.1e+02      41      82 ..      85     123 ..      51     136 .. 0.60
   2 !  111.2   0.0   5.6e-35   6.3e-32       2     166 .]     169     329 ..     168     329 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.72
                   SS-EEEEE-S-SS-SSHHHHH........HHHHHCC-SEEEEESS CS
  Peripla_BP_3  41 glplnetvvaaddpaaaaaaraal..ll.qalklaalPtAviaas 82 
                     +++++v  ++ +++a+  r a+  l+ q++       A+i++s
    CTQ29071.1  85 AQQHQKYVLIGNSYHEAEKERHAIevLIrQRC------SALIVHS 123
                   33444455555555555444444432334444......5555555 PP

  == domain 2  score: 111.2 bits;  conditional E-value: 5.6e-35
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHH..HHCC-SEEEEESSCCHHHHHHHHHCC CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraal.llqal..klaalPtAviaasDelAlgvlqalre 95 
                   + L+++Gh+ri++++  + +g + +d+r++g+ +al+e+g+  ++ ++ +  p+ +++ +a+  l   l  +l+   tAv+a++D++A+g+l+ l++
    CTQ29071.1 169 RMLLNHGHQRIGYLS--SNHGIEDDDMRREGWSKALQEQGIIAPDSWIGSGSPDMQGGEAAMVeL---LgrNLGL--TAVFAYNDSMAAGALTTLKD 258
                   6799***********..99999**************************************99832...3333444..9******************* PP

                   TT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  96 aglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                    g+ vP+ ls+igfdd++++++++P+lTtvr p++ +++ a el l   +g+   + ++   p+lv R+S+
    CTQ29071.1 259 NGIVVPQHLSLIGFDDIPISRYTDPQLTTVRYPVMSMAKLATELALLGAAGKLDREATHCFMPTLVRRHSV 329
                   ********************************************99998888888888885566*****97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.0   1.4e-24   1.5e-21       2     224 ..      60     275 ..      59     306 .. 0.85

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 1.4e-24
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-E CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPc 97 
                   +++g+v+ + ++ ff  lvk+++  a++h   vl+ +   e++ + +ai+ l  ++  +li+ + + s d++    +  ip + l + i+   +  c
    CTQ29071.1  60 DTIGVVVMDVSDAFFGALVKAVDTVAQQHQKYVLIGNSYHEAEKErHAIEVLIRQRCSALIVHSKALSDDELSDFMQH-IPGMVLINRIVPGYAHRC 155
                   79**************************9877766666556666699**************************99999.776666666565567899 PP

                   EEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHHH CS
  Peripla_BP_1  98 vipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaalG 194
                   v  d+   +  +t+ L++ gh+r i  l+ ++     + r++G+  al+e G    d ++ +gs+d+++++ a+ ell ++  + a+ a+nd++a+G
    CTQ29071.1 156 VGLDNVSGALMATRMLLNHGHQR-IGYLSSNHGIEDDDMRREGWSKALQEQGIIAPDSWIGSGSPDMQGGEAAMVELLGRNLGLTAVFAYNDSMAAG 251
                   999****99**************.****9999999******************999*************************7777************ PP

                   HHHHHHHTT.--GGGEEEEEESSGGGHHHH CS
  Peripla_BP_1 195 avlalkkeGrlkikeevdsfiesvvvydgL 224
                   a   lk +G +  ++       s+ ++d +
    CTQ29071.1 252 ALTTLKDNG-IVVPQHL-----SLIGFDDI 275
                   *********.6666666.....66666654 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.9   3.5e-23   3.9e-20       1      46 []       3      48 ..       3      48 .. 0.99

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 3.5e-23
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ti+DVAr+AGVS+aTVSrvLnn+  Vs +tr+ V++a+ +l+Y+Pn
  CTQ29071.1  3 TIRDVARQAGVSVATVSRVLNNSALVSPDTRDVVMKAVTQLGYRPN 48
                8********************************************9 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0   1.4e-20   1.6e-17       1     223 [.      62     279 ..      62     310 .. 0.85

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 1.4e-20
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHH.HHHHHHHHTT-E.EEEESTTGCTTT- CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstala.palkkakaaGIp.Vvafdsddapsge 95 
                   igvvv d s++ff a+ ++++  a++  + v + g++  +a+++  +ie +i + + ++iv+   s+al+ + l + ++  Ip +v +++   + g 
    CTQ29071.1  62 IGVVVMDVSDAFFGALVKAVDTVAQQHQKYVLI-GNSYHEAEKERHAIEVLIRQRCSALIVH---SKALSdDELSDFMQH-IPgMVLINRI--VPGY 151
                   89************9999999999987666665.**************************98...555555666666633.7767999999..9999 PP

                   CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHHTT.TECEEEES CS
  Peripla_BP_4  96 rlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaeva.ganwdaekaqqalealltan.pldgilaa 190
                      +vg dn   + ++ ++l+++  ++   + +l+ + g  ++  r eg  k+l+e  gi   ++++  +  d + +  a+ +ll +n  l +++a 
    CTQ29071.1 152 AHRCVGLDNVSGALMATRMLLNHGHQR---IGYLSSNHGIEDDDMRREGWSKALQE-QGIIAPDSWIgSGSPDMQGGEAAMVELLGRNlGLTAVFAY 244
                   ************************977...8888**********************.66666667884445999**************89******* PP

                   SCCHHHCHHHHHHHTTT.TSTEE.EEEES-HHHHH CS
  Peripla_BP_4 191 ndgmaegalealeaagl.agkvv.vtgqDatpeal 223
                   nd ma gal++l+++g+  ++ + ++g+D  p ++
    CTQ29071.1 245 NDSMAAGALTTLKDNGIvVPQHLsLIGFDDIPISR 279
                   *****************655544799999888765 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.9e-06    0.0033      10      40 ..       2      32 ..       1      32 [. 0.93

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.9e-06
                HHHHHHHHHHTSSHHHHHHHHTTSSCSBHHH CS
       HTH_3 10 lsqeeLAeklGvsrstisriEnGernPslet 40
                ++++++A+ +Gvs++t+sr  n+ +  s++t
  CTQ29071.1  2 ITIRDVARQAGVSVATVSRVLNNSALVSPDT 32
                899********************99999886 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.5   4.7e-06    0.0053      27      49 ..       1      23 [.       1      26 [. 0.92

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.7e-06
  HTH_Tnp_ISL3 27 srsvkavArqlgvSwtTVwrild 49
                  ++++++vArq gvS  TV r+l+
    CTQ29071.1  1 MITIRDVARQAGVSVATVSRVLN 23
                  579******************97 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   7.3e-06    0.0081      16      47 ..       3      33 ..       2      46 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.3e-06
      HTH_31 16 sqeevAerlgvsestlsrlEqGrrgrpspavl 47
                + ++vA+++gvs++t+sr+ +    ++sp++ 
  CTQ29071.1  3 TIRDVARQAGVSVATVSRVLNNSA-LVSPDTR 33
                779*******************99.8999854 PP

>> Sigma54_DBD  Sigma-54, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.2   0.00028      0.31      50      78 ..       2      30 ..       1      62 [. 0.88
   2 ?    3.7   0.1      0.04        45      55     144 ..      58     149 ..      51     155 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00028
                 XXHHHHHTTSSSXHHHHHHHHHHXEEEXS CS
  Sigma54_DBD 50 ltlrevaealelhesTvSRvvsnkyiktp 78
                 +t+r+va++ +++ +TvSRv +n  + +p
   CTQ29071.1  2 ITIRDVARQAGVSVATVSRVLNNSALVSP 30
                 589*******************9987665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.04
                  HHTTSSSXHHHHHHHHHHXEEEXSSXEEECSC...CXXXCSSTSSBHH.THHHHCCTHHHHHHCTS-TTSS--CCHHHHHHHCT.TS--HHHHHH CS
  Sigma54_DBD  55 vaealelhesTvSRvvsnkyiktprGvfelka...fFsssvsseegge.asaeaikalikklieaEdkkkplSDdkivellkek.gieiaRRtva 144
                  v++++++    vS +  + ++k+   v + ++   +  +s +++e++  a +  i+++  +li +   +k lSDd++++ +++  g+ +  R v 
   CTQ29071.1  58 VSDTIGVVVMDVSDAFFGALVKAVDTVAQQHQkyvLIGNSYHEAEKERhAIEVLIRQRCSALIVH---SKALSDDELSDFMQHIpGMVLINRIVP 149
                  55666666666666655555555444444333001233344444454423344566666666655...899*******99887414666666665 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   7.7e-05     0.086      22      41 ..       3      22 ..       2      24 .. 0.94
   2 ?    2.1   0.1      0.15   1.6e+02       8      22 ..     103     117 ..     101     118 .. 0.86
   3 ?   -3.2   0.0       6.9   7.7e+03      21      30 ..     293     302 ..     293     302 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.7e-05
      HTH_38 22 slreIArrLgrspsTIsREl 41
                ++r++Ar+ g+s  T+sR l
  CTQ29071.1  3 TIRDVARQAGVSVATVSRVL 22
                79****************98 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.15
      HTH_38   8 eeReeIerllaeGls 22 
                  eR+ Ie l+ + +s
  CTQ29071.1 103 KERHAIEVLIRQRCS 117
                 6********988776 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.9
      HTH_38  21 lslreIArrL 30 
                 +s+++ A +L
  CTQ29071.1 293 MSMAKLATEL 302
                 89****9987 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   2.5e-05     0.028      22      44 ..       2      24 ..       2      25 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.5e-05
                --STTTSSSS---SSSS--SS-- CS
       HTH_7 22 isiskIAkevnisRsTvYRylad 44
                i+i+++A++ ++s++Tv R+l+ 
  CTQ29071.1  2 ITIRDVARQAGVSVATVSRVLNN 24
                69*******************95 PP

>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.9e-05     0.044      51      84 ..       3      36 ..       1      40 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.9e-05
  Trp_repressor 51 sqreIaeelgvSiAtItRvsrsLktgsdeykavL 84
                   + r++a + gvS+At++Rv ++    s++ ++v+
     CTQ29071.1  3 TIRDVARQAGVSVATVSRVLNNSALVSPDTRDVV 36
                   6799***************999888888887776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   7.2e-05     0.081      19      39 ..       3      23 ..       2      26 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.2e-05
      HTH_23 19 svreIAreLgvsrrTvyrwlk 39
                ++r++Ar+ gvs  Tv+r+l+
  CTQ29071.1  3 TIRDVARQAGVSVATVSRVLN 23
                89****************997 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00021      0.23      20      40 ..       3      23 ..       1      24 [. 0.91
   2 ?   -1.6   0.0       2.2   2.4e+03      32      48 ..     246     262 ..     238     265 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00021
                BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 20 tlselArrtglpkStvhRlLq 40
                t++++Ar++g++ +tv+R L+
  CTQ29071.1  3 TIRDVARQAGVSVATVSRVLN 23
                899***************996 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHTTSE CS
    HTH_IclR  32 kStvhRlLqtLvelGyv 48 
                  S + + L tL   G+v
  CTQ29071.1 246 DSMAAGALTTLKDNGIV 262
                 56788899***999998 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00012      0.14      18      39 ..       2      23 ..       2      24 .. 0.93
   2 ?   -2.8   0.0       4.3   4.8e+03      39      47 ..     200     208 ..     200     208 .. 0.86
   3 ?   -3.2   0.0       5.8   6.5e+03      18      28 ..     293     303 ..     291     304 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
      HTH_24 18 isqreLAerlglSpstvnrrlk 39
                i++r++A++ g+S++tv+r l+
  CTQ29071.1  2 ITIRDVARQAGVSVATVSRVLN 23
                89*****************887 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.3
      HTH_24  39 krLeeeGlI 47 
                 k L+e+G+I
  CTQ29071.1 200 KALQEQGII 208
                 689999998 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.8
      HTH_24  18 isqreLAerlg 28 
                 +s++ LA +l 
  CTQ29071.1 293 MSMAKLATELA 303
                 89999999986 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00018       0.2      11      40 ..       2      30 ..       1      40 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
      HTH_26 11 itkseLargtgisaatlsrlvkgkpervsl 40
                it+ ++ar++g+s at+sr +++ +  vs 
  CTQ29071.1  2 ITIRDVARQAGVSVATVSRVLNNSA-LVSP 30
                5999******************974.5555 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00024      0.27      18      34 ..       3      19 ..       2      20 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00024
                -HHHHHHHHTSSHHHHH CS
      TetR_N 18 tvreIAkrAGvskgalY 34
                t+r++A++AGvs +++ 
  CTQ29071.1  3 TIRDVARQAGVSVATVS 19
                89************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2490.72
//
Query:       CTQ29072.1  [L=385]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-45  155.6  17.6      1e-45  155.6  17.6    2.8  3  DUF418    Protein of unknown function (DUF418)


Domain annotation for each model (and alignments):
>> DUF418  Protein of unknown function (DUF418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   2.0     0.048   8.6e+02      25      76 ..      24      70 ..       3      96 .. 0.41
   2 ?   -0.2   0.5     0.046   8.3e+02      34      71 ..     108     148 ..      77     170 .. 0.46
   3 !  155.6  17.6   5.6e-50     1e-45       1     162 [.     215     374 ..     215     375 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.048
      DUF418 25 llvglplnlllavlaeaaeesallelllsvlrylaglllalgyvalilllla 76
                 + glp +     ++ ++++s  ++l   ++ +l  ll  + +++l++ll+ 
  CTQ29072.1 24 SAFGLPKA-----AYLNPAWSGSASLSDAWTWALLDLLAQVKFLTLFALLFG 70
                23333333.....333333333333333333333333333333333333332 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.046
      DUF418  34 lla...vlaeaaeesallelllsvlrylaglllalgyvali 71 
                 lla   v + ++++ + + ++ s+++    l+l+ + v ++
  CTQ29072.1 108 LLAyalVGLVSWRMVREAHHVKSLFNTGVVLYLTGIAVLVL 148
                 33332222233333333333333333333333322222222 PP

  == domain 3  score: 155.6 bits;  conditional E-value: 5.6e-50
      DUF418   1 lgrkglledpeehkrllrrllligllvglplnllla.vlaeaaeesallelllsvlrylaglllalgyvalillllakekrrrllralaavGRmALTnY 98 
                 l+r+g+l+ ++ + r++rr+ ++++++g+++nl+++ ++++ a++++++++ll++ r+l+++l+a+gy+al    +++  r rl+ a+a vGRmALTnY
  CTQ29072.1 215 LMRSGWLK-GQFSLRHYRRTGALLVAAGMAVNLPAIfAQWYLAWDYRWCAFLLQAPRELSAPLQAIGYAALAWGYWPQLCRFRLVGAIACVGRMALTNY 312
                 79******.****************************************************************************************** PP

      DUF418  99 llqslictllfygyglglfgslgraallllallifllqllfSklwlrrfrqGPlEwlwRrltyg 162
                 llq+lict+lf  y lglf++++r++ll+++  i++++ll+S+lwlrrfrqGP+EwlwR+lt +
  CTQ29072.1 313 LLQTLICTTLF--YHLGLFMRFDRLQLLAFVPPIWAVNLLVSSLWLRRFRQGPVEWLWRQLTLR 374
                 ***********..99***********************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2891.80
//
Query:       CTQ29073.1  [L=222]
Description: GTP cyclohydrolase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-62  210.8   0.4    1.2e-62  210.5   0.4    1.1  1  GTP_cyclohydroI  GTP cyclohydrolase I
  ------ inclusion threshold ------
       0.05   13.8   0.0      0.095   12.9   0.0    1.4  1  QueF             QueF-like protein


Domain annotation for each model (and alignments):
>> GTP_cyclohydroI  GTP cyclohydrolase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.5   0.4   1.4e-66   1.2e-62       2     178 ..      41     218 ..      40     219 .. 0.97

  Alignments for each domain:
  == domain 1  score: 210.5 bits;  conditional E-value: 1.4e-66
                      HHHHHHHHHHTT--TTSTTTTTHHHHHHHHH.HHHTGGGGS-G...GGGGSSEEETT--S-EEEEEEEEEEEETTT--EEEEEEEEEEE-TTEE CS
  GTP_cyclohydroI   2 eeavreiLealgedpereglketpkRvakay.eelfkgleedp..kekvlkkvfeeekdemvlvkdiefsSlCeHHllpfigkahvaYiPkkkv 92 
                      + +++ei++ l+ d ++++l etp+R+ak+y +e+f+gl+++   k +v++++++   demv+v+di+++S+CeHH++ + gka+vaYiPk+ v
       CTQ29073.1  41 TGHMTEIMQLLNLDLSDDSLMETPHRIAKMYvDEIFSGLDYSRfpKITVIENKMK--VDEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSV 132
                      56899*********************************99988668888899888..************************************* PP

                      E-HHHHHHHHHHHHSSEE-HHHHHHHHHHHHHHHH--SEEEEEEEEEEHHHHSSTT--TT-EEEEEEEEEHHHH-HHHHHHHHHHH CS
  GTP_cyclohydroI  93 iGlSklaRivdvvarrlqvQErlteqiadaleevlkpkgvavvieaehlCmtmrgvkkkesktvtsalrGefkedaalreefleli 178
                      iGlSk++Riv+++a+r+qvQErlt+qi  al++ l++++vav i+a h+C+++rg+++++s t+t++l G fk+ +++r+efl+ +
       CTQ29073.1 133 IGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRQEFLRAV 218
                      ***********************************************************************************986 PP

>> QueF  QueF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.1e-05     0.095       6      57 ..     122     173 ..     119     182 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
        QueF   6 lvirYvpdkkvvelkslklYlisfrnrgifhEevvnrilddlvealkPkwle 57 
                  ++ Y+p+++v+ l  + + +  f +r + +E  +++il  l + l  + + 
  CTQ29073.1 122 ATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILIALQTLLGTNNVA 173
                 6899***********************************9998877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1767.63
//
Query:       CTQ29074.1  [L=277]
Description: S-formylglutathione hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-69  234.7   0.0    1.5e-69  234.5   0.0    1.0  1  Esterase         Putative esterase
    1.3e-06   28.0   0.0      2e-06   27.5   0.0    1.2  1  Peptidase_S9     Prolyl oligopeptidase family
    6.8e-06   25.5   0.2    0.00058   19.2   0.1    2.1  2  Hydrolase_4      Serine aminopeptidase, S33
    0.00028   20.4   0.2       0.31   10.5   0.0    2.4  2  Esterase_phd     Esterase PHB depolymerase
     0.0045   17.6   3.7     0.0045   17.6   3.7    1.6  2  Abhydrolase_6    Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.013   14.4   0.0      0.019   13.9   0.0    1.4  1  Chlorophyllase2  Chlorophyllase enzyme
       0.03   14.2   0.0       0.04   13.8   0.0    1.2  1  Lipase_3         Lipase (class 3)
       0.04   13.6   0.1        0.1   12.2   0.1    1.7  2  Abhydrolase_1    alpha/beta hydrolase fold
      0.053   13.4   0.5       0.62    9.9   0.5    2.2  1  Abhydrolase_3    alpha/beta hydrolase fold
      0.093   11.7   0.0       0.14   11.2   0.0    1.2  1  Chlorophyllase   Chlorophyllase


Domain annotation for each model (and alignments):
>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.5   0.0   8.3e-73   1.5e-69       1     251 []      21     270 ..      21     270 .. 0.98

  Alignments for each domain:
  == domain 1  score: 234.5 bits;  conditional E-value: 8.3e-73
                 ETTTTEEEEEEEEE.CC.GGTTTEEEEEEE--TTHHCCHHHHHCHHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSB..B.TTEEETTCCCCCCHC.. CS
    Esterase   1 SealgreikvqvyLPedyspgrkypvvylldGltgwdqnfrakelleslaregeiaeviivvvprggessfysdwdlg..arfyenategpgaeaye.. 95 
                 S  l++ ++++++LP++  +++++pv+y+l+Glt++d+nf++k++ ++ a+e +ia v+++++prg+e+++++ +dlg  a+fy+nate p+a +y+  
  CTQ29074.1  21 SPVLNCAMTFSIFLPPE--RETPPPVLYWLSGLTCNDENFTTKAGAQRIAAELGIALVMPDTSPRGDEAANDDGYDLGqgAGFYLNATEAPWAAHYRmy 117
                 6789*************..******************************************************************************** PP

                 HHHHTHHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CCHCHHHC........TTCCHHHCC-CCCCHCHHCHTTSEEEE CS
    Esterase  96 tfltqeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfSpivnpsnamWgq........eekeawqendpvllakelsaslkalri 186
                 ++l++eL+ l++++f++ ++ +av G+SmGG+gALi+alk+p+r++svs+f+pivnps+++Wg+        ++++aw ++d+++l+++ s++ +a+ +
  CTQ29074.1 118 DYLRDELPALIRSEFSVGER-CAVSGHSMGGHGALIMALKNPGRYASVSAFAPIVNPSQVPWGKkaftaylgADESAWHSWDSCALMQA-SRPEDAVPT 214
                 ********************.******************************************************************76.********* PP

                 EEEECTTBCCCHTSCHHHHHHHHHHHCCHHHHCCCCCCTT-SCCCC--SSHHHHHHHHHHCHHHH CS
    Esterase 187 yldvGtseddlgeqlsveilevlarnrelkeqlaargvegedheydGghsweyWraqLiaaladl 251
                 ++d+G+++++l+ ql+++ l+++ar+++++  l+ r ++g+dh+y+       ++a++i++++++
  CTQ29074.1 215 LIDQGDNDPFLAGQLQPAVLAEVARQKAWP--LTLRIQPGYDHSYY-------FIASFIEDHLRF 270
                 ******************************..**************.......********9875 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.1e-09     2e-06      54     204 ..     126     270 ..     118     276 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.1e-09
                   HHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEE CS
  Peptidase_S9  54 alakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdllteeymewgnpeeneegykelspyspldnvkaypplLlih 150
                   al+  ++   er+a+ G+S GG  ++ ++ ++p +++ + a +p+v+  +    ++++t+       ++ + +    +++ +p d+    +p+L+ +
    CTQ29074.1 126 ALIRSEFSVGERCAVSGHSMGGHGALIMALKNPGRYASVSAFAPIVNPSQVPWGKKAFTAYLGADESAWHSWDSCALMQASRPEDA----VPTLIDQ 218
                   5677778889********************************************98899966666677777777766666666666....9****** PP

                   ETT-SSS-THHHHHHHHHHH--S-S.EEEEEETTS-SSTTSSHHHHHHHHHHHHH CS
  Peptidase_S9 151 GlaDdrvppaealklvaaLqkkgkn.vlllifpdegHgvgkprakveelarllaF 204
                   G++D     +    ++a++ +++   + l+i p+ +H+++     +  +++ l+F
    CTQ29074.1 219 GDNDPFLAGQLQPAVLAEVARQKAWpLTLRIQPGYDHSYY---FIASFIEDHLRF 270
                   *******9998888888888888877***********776...444555555555 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   3.2e-07   0.00058      75     127 ..     135     184 ..     111     191 .. 0.81
   2 ?    4.4   0.0     0.011        19     175     232 ..     195     255 ..     191     259 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.2e-07
  Hydrolase_4  75 elplfllGhSmGGliallyllrypdkvaglilsaPalkikaklkappllklll 127
                  ++++ + GhSmGG  al ++l++p ++a +  +aP +++ +   +p+ +k++ 
   CTQ29074.1 135 GERCAVSGHSMGGHGALIMALKNPGRYASVSAFAPIVNPSQ---VPWGKKAFT 184
                  56899*******************************99883...677777655 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.011
  Hydrolase_4 175 elldamkrleeraakitlPllllhGeaDkvvdpeasrelyerlgsk...dktlklypglyH 232
                  + +d ++ ++++ ++  +P+l+ +G++D+    + + +++++++++     tl++ pg  H
   CTQ29074.1 195 HSWDSCALMQASRPEDAVPTLIDQGDNDPFLAGQLQPAVLAEVARQkawPLTLRIQPGYDH 255
                  55666777788888889*************9999997777777665233445666665555 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00018      0.31       2      59 ..      29      85 ..      28     102 .. 0.89
   2 !    7.5   0.3    0.0014       2.6      97     183 ..     136     225 ..     124     242 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
  Esterase_phd  2 ayrlylppGarrgamplvvmlhGctqsveefaaGtrmnlladklGvvvlypeqslran 59
                  ++ ++lpp ++    p++  l G t + e+f++ +  + +a +lG++++ p+ s r +
    CTQ29074.1 29 TFSIFLPPERET-PPPVLYWLSGLTCNDENFTTKAGAQRIAAELGIALVMPDTSPRGD 85
                  57899***9887.789999*********************************999875 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0014
  Esterase_phd  97 arvyvaGlsaGaaladllalhypdvfaavalhsGlal.Geaadvisaldv....mrrGlrqapaaavdalveag.aypglpalvvqGdadtvv 183
                    r  v+G s G+  a ++al+ p ++a+v+  + +    +   +  a+ +      +           al +a+    ++p+l+ qGd d  +
    CTQ29074.1 136 ERCAVSGHSMGGHGALIMALKNPGRYASVSAFAPIVNpSQVPWGKKAFTAylgaDESAWHSWD---SCALMQASrPEDAVPTLIDQGDNDPFL 225
                   5889************************98765432202222233333330000233222222...223333320235788888888888665 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.5   4.5e+03     162     189 ..      33      66 ..      11      85 .. 0.43
   2 !   17.6   3.7   2.5e-06    0.0045      32     169 ..      93     240 ..      92     274 .. 0.45

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.5
                    TCCHHTT-TTGC.EEE.C..TT-C..HHHHCHHC CS
  Abhydrolase_6 162 paaawadlpvpl.lvl.g..geDp..lvprller 189
                     +++ + +p+p+ ++l g  ++D+  + ++ ++r
     CTQ29074.1  33 FLPPERETPPPVlYWLsGltCNDEnfTTKAGAQR 66 
                    2334444444442233313333433433322333 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.5e-06
                    E--TTST.........S-GGCS...--HHHCHHH.HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.......EEEEES-..----TTTS---- CS
  Abhydrolase_6  32 pDlpGhG.........rsdppp...ldledladl.aalldelaagggpvvlvGHSlGGalalaaapla.....lvvgvlldppptalpagllaaal 109
                    +Dl G+G          ++ ++   +d+  l+d   al++++ ++g +  + GHS+GG+ al     a     +     +++   ++p+ +++ ++
     CTQ29074.1  93 YDL-GQGagfylnateAPWAAHyrmYDY--LRDElPALIRSEFSVGERCAVSGHSMGGHGALI---MAlknpgRY--ASVSA---FAPIVNPSQVP 177
                    566.777566666444344444333444..3333488888888899999********885555...444333322..44444...44444433333 PP

                    TTHHHHHHTT-C..CCCH.......CCH.....S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT- CS
  Abhydrolase_6 110 elllallallrl..lawl.......sre.....plprlfladedadaawrarlarlaallaglgllpaaawadl 169
                    +  +a++a l +   aw+       +       ++ +++++            +  + l+ +l +  +a++a+ 
     CTQ29074.1 178 WGKKAFTAYLGAdeSAWHswdscalM-QasrpeDAVPTLID----------QGDNDPFLAGQLQPAVLAEVARQ 240
                    33333333222222366632222210.01122211112222..........22222222222222222233333 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.1e-05     0.019      69     121 ..     116     167 ..      27     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
  Chlorophyllase2  69 vlnWlakgLesvlpeevepdlsklalsgHSrGgktafalalgkaktslkfsal 121
                      + ++l ++L   + +e  +  ++ a+sgHS Gg+ a+ +al++     ++sa 
       CTQ29074.1 116 MYDYLRDELPALIRSEF-SVGERCAVSGHSMGGHGALIMALKNPGRYASVSAF 167
                      44555555554444443.34579******************998755566654 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.2e-05      0.04      45      85 ..     114     156 ..      71     188 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.2e-05
                 S-HHHHHHHHHHHHHHHTT..-EEEEEEEETHHHHHHHHHHHH CS
    Lipase_3  45 eslreqvlkelkrllekyp..eysivvtGHSLGgalAlLaald 85 
                   +++ +++el  l+++      +++v+GHS+Gg  Al++al 
  CTQ29074.1 114 YRMYDYLRDELPALIRSEFsvGERCAVSGHSMGGHGALIMALK 156
                 457888888888887777634479***************9975 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   5.8e-05       0.1      46     107 ..     108     171 ..     102     216 .. 0.79
   2 ?   -2.0   0.0       1.3   2.3e+03     121     223 ..     205     223 ..     172     230 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.8e-05
                    TTTGB.CHHSHHHHHHHHH..HHHHHCTTSSEE.EEEETHHHHHHHHHHHHHGGGEEEEEEESE.C CS
  Abhydrolase_1  46 apacinddygtasvaddld..rildalgddklt.lvGhSmGGmialayaaeyperVkalvllga.i 107
                    ap+    +y++ ++ +d     i+  + +++   + GhSmGG  al +a+++p r +++ + ++ +
     CTQ29074.1 108 APWA--AHYRMYDYLRDELpaLIRSEFSVGERCaVSGHSMGGHGALIMALKNPGRYASVSAFAPiV 171
                    5565..677777777776664558888888888899*****************9988887777752 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
                    HHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHS.EEE CS
  Abhydrolase_1 121 aksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieqwpttdsaklllrlrelknvla.ptl 215
                    a ++ d                                                                                     a ptl
     CTQ29074.1 205 ASRPED-------------------------------------------------------------------------------------AvPTL 215
                    222211.....................................................................................12666 PP

                    EEEETTCS CS
  Abhydrolase_1 216 visgtsDp 223
                    + +g++Dp
     CTQ29074.1 216 IDQGDNDP 223
                    66666666 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.5   0.00034      0.62      70     108 ..     135     173 ..     102     259 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00034
                    TCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE CS
  Abhydrolase_3  70 psrivlaGdSaGGnlaaavalrardegepkvagqvliyP 108
                     +r+++ G S GG+ a+ +al+   +  +  a+  ++ P
     CTQ29074.1 135 GERCAVSGHSMGGHGALIMALKNPGRYASVSAFAPIVNP 173
                    479**************9999887774333333333333 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.7e-05      0.14     106     146 ..     119     166 ..     107     177 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.7e-05
  Chlorophyllase 106 glkavlptsvean...lsklalvGhsrGGktafalal....gysselt 146
                     +l+  lp  + ++    ++ a++Ghs GG+ a+ +al    +y+s   
      CTQ29074.1 119 YLRDELPALIRSEfsvGERCAVSGHSMGGHGALIMALknpgRYASVSA 166
                     66667775555551115789*****************76666664333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1963.42
//
Query:       CTQ29075.1  [L=657]
Description: ferric iron-catecholate outer membrane transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-63  214.3  26.0      8e-63  213.9  26.0    1.3  1  TonB_dep_Rec  TonB dependent receptor
    1.5e-33  115.5   1.1    3.2e-33  114.5   0.3    2.0  2  Plug          TonB-dependent Receptor Plug Domain
    1.7e-15   56.9   2.7    6.3e-15   55.1   0.3    2.2  2  OMP_b-brl_3   Outer membrane protein beta-barrel family
     0.0012   18.1   1.2     0.0012   18.1   1.2    2.1  4  BBP2          Putative beta-barrel porin-2, OmpL-like. bbp2
  ------ inclusion threshold ------
      0.043   13.7   0.0       0.84    9.4   0.0    2.3  2  DUF5020       Domain of unknown function (DUF5020)


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.9  26.0   2.2e-66     8e-63      36     470 .]     218     656 ..      75     656 .. 0.78

  Alignments for each domain:
  == domain 1  score: 213.9 bits;  conditional E-value: 2.2e-66
                   E..........EEEEEEEEEECCCEECCCEEECECCEEEEEEEEEEEEEEEEE....EEEEE.EEEEEEEEEEEEEEE.......EEEEEEEE.... CS
  TonB_dep_Rec  36 r..........gylgtnplyygdnysetdnkrlrlgydydlddnlswklslra....glnYs.stdgdsdynnsglgg.......grsynrdn.... 106
                   +          g++++++   +  ++ ++n+++++gy +d++d++s   sl+     + nYs s++g++d  ns l                n    
    CTQ29075.1 218 SnatgetprieGFTSRDG-NVEFAWTPNENHDFTAGYGFDRQDRDSD--SLDRnrleRENYSlSHNGRWDIGNSELKFygekvdnK------Npgqs 305
                   122222223332222222.2222244555666666666665555444..3332223344455433443444333222222222210......12112 PP

                   .....CEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEEEECCBEESCCTCCSEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEETTCSSS CS
  TonB_dep_Rec 107 .....dyyglgnvlaaeldlngdlw.fGsnladgldyrklsddgydaydplnpsgdasdsvdrdsyglyaqdnikltdrltltlGlRydhysvfgkd 197
                        ++ + ++++ ++l + ++l+ fG      +++r          dp+n s +   s+++++y+l+ +d++++ ++l lt+G+R d ++++   
    CTQ29075.1 306 gtitsESNAIDGKYVLPLGMINQLVtFG------GEWR-----HDKLKDPVNLS-SGGQSTSASQYALFIEDEWRIIEPLALTTGIRMDDHQTY--- 387
                   2111122223344444444444422477......****.....34456677777.889999***************************888888... PP

                   S...EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEE..CCCCCEEEECSTT---EEEEEEEEEEEEEE..TTEE...EEEEEE CS
  TonB_dep_Rec 198 lragafsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggs..ngaggalsngnpdLkPEtsknyelGlkldd..drln...ltlayF 287
                            g+++sP++ l+y++td ++++++++++f+aPsl +l++ ++     g+  + gnpdLkPEts+++elGl +++  ++l    ++++ F
    CTQ29075.1 388 ---------GDHWSPRAYLVYNATDTVTVKGGWATAFKAPSLLQLNPDWTtnSCRGSCSIVGNPDLKPETSESFELGLYYRGeeGWLEnveGSITTF 475
                   .........6*************************************99977777999999******************999887777999****** PP

                   EEEEEEEEEEESSSSCSTTTCS................EEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECECEEECTTTTSSTTEESE CS
  TonB_dep_Rec 288 ridiknfittdpdgpslgglgd................fqyqNvgkarikGvElelsyrltpgWglglsgggytYydagddsdaddggnplpnvPkh 368
                   +++++++i+   ++  +  +g+                f+y+Nv+karikGvE e++  + + W+l  + + ytY+d +  +  + g++pl  +P h
    CTQ29075.1 476 QNNVDDMIDVLRTSSASEAPGYpnfvgwktvngkrvpiFRYFNVNKARIKGVETEVKIPFGDEWKL--TVN-YTYNDGR--DLSNGGDKPLQTLPFH 567
                   *****************99999*************************************9999996..777.9977774..3688999********* PP

                   EEEEEEEEECSEEEEEEEESEEEEEEECCSSEEEEECECCEEEE--EEEEEEEEEEEESSSEEEEEEEESTTE...TCSCEEESTTTTTCCEB--SE CS
  TonB_dep_Rec 369 tanlgltYkfpaggWgaglllagarYvavggrrygdaantfrrvpgYtlldlslgYklpknltlslgvnNLfd...kryyassgyyglggypgpgRt 462
                   tan +l++ +p+++W++   ++ a+Y++++   +  a++     +gYtl+d+ ++++++kn++l+ gv+N+ d   +        +  + y++ gR+
    CTQ29075.1 568 TANGTLDW-KPLDDWSF---YVTANYTGQQR--AVSATGK--TPGGYTLFDVGAAWQVTKNVKLRSGVQNVGDkdlS-------RD-DYSYTEEGRR 648
                   ***7799*.67999**3...4699**85555..5555555..999****************************4432.......24.999******* PP

                   EEEEEEEE CS
  TonB_dep_Rec 463 frlglryk 470
                   +++ + y+
    CTQ29075.1 649 YFMAVDYR 656
                   ****9997 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   0.3   8.9e-37   3.2e-33       2     108 .]      43     151 ..      42     151 .. 0.98
   2 ?   -3.8   0.0         5   1.8e+04      39      58 ..     215     234 ..     201     238 .. 0.76

  Alignments for each domain:
  == domain 1  score: 114.5 bits;  conditional E-value: 8.9e-37
                 HGCCSSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEEECCCCSTTSEEEEETTB-GGCSEEEETTEEESC....CCCSCTCGCSSBGGGEEEEEEEESSC CS
        Plug   2 kkdtpgsvsvvtaediekqgatsladalqgvpgvnvsssgggggassisiRGlgsnrvlvlvDGvpian....ggsgagdlssidpedierievlkGpa 96 
                 +kd+p+s+sv+t++d++++++++l+d+l+ vpgv+   ++ g+++ ++siRGl+s+++l+lvDG ++++     +++++dl++i++++ieriev++Gp 
  CTQ29075.1  43 VKDAPASISVITQQDLQRKPVQNLKDVLRDVPGVQ--LTNEGDNRKGVSIRGLSSSYTLILVDGKRVNSrnavFRHNDFDLNWIPVDAIERIEVVRGPM 139
                 689********************************..79************************************************************ PP

                 HCTTSSTGSSEE CS
        Plug  97 salyGsdaigGv 108
                 s+lyGsda+gGv
  CTQ29075.1 140 SSLYGSDALGGV 151
                 ***********8 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5
                 CCCCSTTSEEEEETTB-GGC CS
        Plug  39 ssgggggassisiRGlgsnr 58 
                 +s+++ ++++  i G++s++
  CTQ29075.1 215 QSSSNATGETPRIEGFTSRD 234
                 56777888888888887754 PP

>> OMP_b-brl_3  Outer membrane protein beta-barrel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.029     1e+02      59      92 ..     235     268 ..     207     343 .. 0.81
   2 !   55.1   0.3   1.8e-18   6.3e-15     154     386 ..     385     643 ..     376     656 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.029
  OMP_b-brl_3  59 fqlDYtnplskkgkleaGykysfrntdsdfkyen 92 
                  +++ + +  ++++ + aGy +  ++ dsd    n
   CTQ29075.1 235 GNVEFAWTPNENHDFTAGYGFDRQDRDSDSLDRN 268
                  6788888888999999999998888888865433 PP

  == domain 2  score: 55.1 bits;  conditional E-value: 1.8e-18
  OMP_b-brl_3 154 kny.fnlfPsvslsyklndknklqlslsYyrriinRPsisqLnPfrnysd..plnisqGNPnLkPeftnsfelgyskkwk........ltlslsyryt 240
                  ++y  ++ P ++l y+ +d+   +++ +  +   + Ps+ qLnP  ++ +       +GNP+LkPe + sfelg  ++ +         +++++ ++ 
   CTQ29075.1 385 QTYgDHWSPRAYLVYNATDTV--TVKGGWATAF-KAPSLLQLNPDWTTNScrGSCSIVGNPDLKPETSESFELGLYYRGEegwlenveGSITTFQNNV 479
                  566568************976..9999999987.9*********76544411344779****************999643354444446666666666 PP

  OMP_b-brl_3 241 ndniqitvitddnnn................vllttyeNlgksqsyglelslslnptkwwslnanlnlyynkskidgslnsdvsnkgfs.wnlnntft 321
                  +d i + +++ + +                 v + +y N++k +  g+e  +++++ + w+l++n + +  +  ++g  ++ +++  f  +n+++ ++
   CTQ29075.1 480 DDMIDVLRTSSASEApgypnfvgwktvngkrVPIFRYFNVNKARIKGVETEVKIPFGDEWKLTVNYTYNDGRDLSNG-GDKPLQTLPFHtANGTLDWK 576
                  666655444443333779999999999999999*****************************887776544444444.55566666655258999999 PP

  OMP_b-brl_3 322 lpkkislqlngfyrspqv..taqgkr.kafysvdlglsksflkkkltlslnvnDifntrkrrstttgd 386
                     ++s+ ++++y+++q+  +a gk+  +++ +d+g+  ++  k+ +l   v+++ ++  +r   +++
   CTQ29075.1 577 PLDDWSFYVTANYTGQQRavSATGKTpGGYTLFDVGAAWQV-TKNVKLRSGVQNVGDKDLSRDDYSYT 643
                  999**********66665449999962556669******99.57999999999998887766655555 PP

>> BBP2  Putative beta-barrel porin-2, OmpL-like. bbp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.97   3.5e+03     215     239 ..     154     178 ..     141     189 .. 0.70
   2 ?   -2.2   0.0       0.5   1.8e+03     307     335 ..     327     355 ..     236     392 .. 0.65
   3 ?   -2.7   0.0       0.7   2.5e+03      79      79 ..     384     384 ..     329     415 .. 0.50
   4 !   18.1   1.2   3.3e-07    0.0012     166     277 ..     517     634 ..     451     655 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.97
        BBP2 215 vltykltdkltlilnadygeeegqk 239
                 ++t k+++k+t +l ad + +e+  
  CTQ29075.1 154 IITKKIGQKWTGTLSADTTIQEHRD 178
                 5667888888888888877776544 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.5
        BBP2 307 tenltvRpElrydessddtfvdgsgkpts 335
                 ++ +t+  E r+d+ +d+++ +++g++ts
  CTQ29075.1 327 NQLVTFGGEWRHDKLKDPVNLSSGGQSTS 355
                 44444455555555555555555444443 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.7
        BBP2  79 s 79 
                  
  CTQ29075.1 384 H 384
                 2 PP

  == domain 4  score: 18.1 bits;  conditional E-value: 3.3e-07
        BBP2 166 e.ddsngtpalggqvtyspddklslnlntlygndn..pdgr.....fktqnrfiydlvltykltdkltlilnadygeeegqkntgggksaewygaalya 256
                 + +++ + +++ + v++   d+++l++n++y++ +  +  +      +t +    + +l++k+ d+++++++a+y+ ++++ + +g++   +  + + a
  CTQ29075.1 517 FnVNKARIKGVETEVKIPFGDEWKLTVNYTYNDGRdlS--NggdkpLQTLPFHTANGTLDWKPLDDWSFYVTANYTGQQRAVSATGKTPGGYTLFDVGA 613
                 346677789999*******************9999663..23355455555555999**********************99888888888888888889 PP

        BBP2 257 kyqftdkfalgvRgEyfddkd 277
                  +q+t++++l   +  + dkd
  CTQ29075.1 614 AWQVTKNVKLRSGVQNVGDKD 634
                 999999999877776666666 PP

>> DUF5020  Domain of unknown function (DUF5020)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.064   2.3e+02     120     152 ..     416     448 ..     390     460 .. 0.82
   2 ?    9.4   0.0   0.00023      0.84     166     199 ..     517     550 ..     487     554 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.064
     DUF5020 120 ekknsfqltavWslnfaeglltfsGfadlwree 152
                 + ++ +ql   W++n+++g +++ G  dl  e 
  CTQ29075.1 416 KAPSLLQLNPDWTTNSCRGSCSIVGNPDLKPET 448
                 4557799******************99987665 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00023
     DUF5020 166 fWvnlnklkgvdddfnlslGtevelsnnfakkdk 199
                 f vn +++kgv+ ++++ +G e++l+ n++ +d+
  CTQ29075.1 517 FNVNKARIKGVETEVKIPFGDEWKLTVNYTYNDG 550
                 789999**********************988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4557.07
//
Query:       CTQ29076.1  [L=121]
Description: exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.079   12.8   0.0        0.1   12.4   0.0    1.2  1  DUF4354   Domain of unknown function (DUF4354)


Domain annotation for each model (and alignments):
>> DUF4354  Domain of unknown function (DUF4354)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.6e-06       0.1       2      61 ..       4      65 ..       1      78 [. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.6e-06
                XX..XXXXXXXXXXXXXXXXXXXXXSSEEEE..EEEEEEEEEEETTEEEEEEEEEEEEEE-S CS
     DUF4354  2 kkifvaslllagvvllaslefasvpdkvivy..atekdkgsvsveekaqytkafkvkvvNls 61
                k  +v+ l+lag  l++++ + +v  +v  +  a+ ++ +  ++ ++ +++k f++++ Nl 
  CTQ29076.1  4 KSCWVMTLMLAGASLTFCSVAEAVTTSVSSFtsARAGNANDTTDADNPARIKGFNLNIPNLH 65
                56899****************9999999877335677788899999************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 959.69
//
Query:       CTQ29077.1  [L=78]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.063   12.2   0.3      0.074   12.0   0.3    1.0  1  Cas1_AcylT  10 TM Acyl Transferase domain found in Cas1p


Domain annotation for each model (and alignments):
>> Cas1_AcylT  10 TM Acyl Transferase domain found in Cas1p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   4.1e-06     0.074     180     218 ..      27      65 ..      19      67 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.1e-06
  Cas1_AcylT 180 kgdfslkrlvqvlfrlNlLtvvLclvmnrpYqfYyfvpL 218
                 + + s +r++ +++rl l+t++  ++ nr++ +Y+f pL
  CTQ29077.1  27 TRKPSEQRAFFMFVRLQLVTILHNYIDNRNHYLYHFRPL 65 
                 5566779*******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 596.23
//
Query:       CTQ29078.1  [L=489]
Description: lysine transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     9e-146  486.2  42.3     1e-145  486.1  42.3    1.0  1  AA_permease    Amino acid permease
    2.2e-38  132.2  49.5    4.1e-38  131.3  49.6    1.4  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  486.1  42.3  1.1e-149    1e-145       1     474 [.      21     475 ..      21     480 .. 0.98

  Alignments for each domain:
  == domain 1  score: 486.1 bits;  conditional E-value: 1.1e-149
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ia+gg iGtglfv++g ++sqaGp+gall+y+l+g+++++ m slge+a ++p+sg+f+ty ++++++ +Gf+ G+ny+++w++++a++l+a++
   CTQ29078.1  21 HLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYILIGLMVYFLMTSLGELAAFMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVASQ 118
                  99************************************************************************************************ PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivg...iillaggkpnkgagfrflgdngsifknnlppgfake 193
                   ++++w  ++d p  w+++a+fl++++++n ++v+++geae++++lik+ ++i+fiivg   i+++++g++ +g      ++n++i+++ + +g    
   CTQ29078.1 119 LVMSYW--FPDTP-GWIWSALFLGIMFLLNWISVRGFGEAEYWFSLIKVATVIIFIIVGvmmIVGIFKGAQPAG------WSNWGIADAPFAGG---- 203
                  ******..*****.**********************************************999999********......**************.... PP

  AA_permease 194 eegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa..aspfvifikesgvsvla 289
                      f+++i+v++iv f+f+G+el++i+agE+++Pek+iP+a++qv++ri++fYv+++l+i+l++p++d++ll   ++   +spf ++++++g+  +a
   CTQ29078.1 204 ----FSAMIGVAMIVGFSFQGTELIGIAAGESENPEKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDisVSPFTLVFQHAGLLSAA 297
                  ....*********************************************************************966655899**************** PP

  AA_permease 290 plinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsy 387
                   ++navilta+ls++ns++y+++R+ly+la+dg aP++++k+s++gvP +a++++++i++l++l +++  +  +v+ +ll+ s++ g+i wl i++s+
   CTQ29078.1 298 AIMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFSKLSRGGVPRNALYATTVIAALCFLTSMFGNQ--TVYLWLLNTSGMTGFIAWLGIAISH 393
                  ***********************************************************************..************************* PP

  AA_permease 388 lrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                  +rfR+ + +qg +i+ l++++ ++plg+i+++++++ii+l +++ a+l+     ++++++ +aa+y++++lfl+i++g+kl++ +++
   CTQ29078.1 394 YRFRRGYVLQGNDINNLPYRSGFFPLGPIFAFVLCLIITLGQNYEAFLK-----DTIDWGGVAATYIGIPLFLVIWFGYKLAKGTRF 475
                  *************************************************.....9*************************9988776 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3  49.6   4.6e-42   4.1e-38       4     401 ..      20     433 ..      17     465 .. 0.79

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 4.6e-42
  AA_permease_2   4 lsafalvigsvigsgifvkn....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasi 95 
                    + +++++ig  ig+g fv++    + a +g al+ +++i+ +++   ++  + El++ +p sg   +y+++   + ++f  +w +w+ +++++ ++
     CTQ29078.1  20 RHLTMIAIGGSIGTGLFVASgatiSQAGPGGALLSYILIGLMVY--FLMTSLGELAAFMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTI-AV 112
                    5789***************9985544456666666666666666..4666789***99*********************************77.99 PP

  AA_permease_2  96 lsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitv..dgggfssl....stetdtffpn 185
                      va +  ++ ++pd+ g+ w +     ++l + +l+n +++++ + +  +  ++k+  ++ii+ii+g+ ++   ++g++ +    +++ d  f++
     CTQ29078.1 113 DLVASQLVMSYWFPDTPGWIWSA-----LFLGIMFLLNWISVRGFGEAEYWFSLIKV-ATVIIFIIVGVMMIvgIFKGAQPAgwsnWGIADAPFAG 202
                    99999999999****98875444.....45777777777788888888889999999.58888888888776323344442234445555556666 PP

  AA_permease_2 186 gwpgvllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpddeianlsn.....lgsvaalffeavggkvvai 274
                    g + ++++ +iv +sf+G e +   + e  +++k++p+a   ++  +l++y++  + +  ++p    + l+n     ++s+++l+f+ +g   +a+
     CTQ29078.1 203 GFSAMIGVAMIVGFSFQGTELIGIAAGEseNPEKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNdvkdiSVSPFTLVFQHAGLLSAAA 298
                    77777888899*****************55666*******99999999999888888888888866655555444457778*********99**** PP

  AA_permease_2 275 ivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigal 370
                    i++++i  ++l a+n+ +++s+r+l+ la dg  Pr f+k ++ g p +a+  t +++ +++l +++++ + y +ll++s +  +i +l ++i+  
     CTQ29078.1 299 IMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFSKLSRGGVPRNALYATTVIAALCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHY 394
                    ************************************************************************************999988777766 PP

  AA_permease_2 371 ilrkkrphlkr........pgkilvaiigalfllfllva 401
                      r+    ++          g+ +++ i+a++l++++ +
     CTQ29078.1 395 RFRRGYVLQGNdinnlpyrSGFFPLGPIFAFVLCLIITL 433
                    555553322223445533355567777776666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 3563.15
//
Query:       CTQ29079.1  [L=40]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       147  (0.00819901); expected 358.6 (0.02)
Passed bias filter:                      135  (0.0075297); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 318.88
//
Query:       CTQ29080.1  [L=288]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-49  168.2   1.3    2.3e-49  167.6   1.3    1.2  1  LysR_substrate  LysR substrate binding domain
    1.7e-16   59.9   1.1    1.7e-16   59.9   1.1    2.8  3  HTH_1           Bacterial regulatory helix-turn-helix protein
    0.00068   18.8   0.0     0.0016   17.6   0.0    1.7  1  PBP_like        PBP superfamily domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   1.3   3.9e-53   2.3e-49       3     204 ..      86     286 ..      84     287 .. 0.98

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 3.9e-53
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvs 97 
                     g+ g +r+ a++t+++y++p+++ar+r  +P++ +el++g+s ++++++a+ ++D++++ gp++ ++++a+p++e++lv++a+p+ pL +g +v+
      CTQ29080.1  86 GDNGAIRVYASSTIGNYIMPEIIARYRHDFPDLPVELSVGNSLDVINAVADLRVDFGLIEGPCHAADIIAEPWLEDELVVFAAPNSPLLAG-EVT 179
                     6789**************************************************************************************9.899 PP

                     GGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCC CS
  LysR_substrate  98 ledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgre 192
                     l++La+ p+il+e+gsg+r+ ++ +l ++  + + ++e+ + ea++++v++GlGi++l+r ++++ la+g l  l +p p+l+r+l+ +++++++
      CTQ29080.1 180 LQQLAEAPWILREHGSGTREIVDYVLLSHLPAFHLGMELGNSEAIKHAVRHGLGISCLSRRVIAEQLASGTLAELKVPLPRLTRTLWRIHHRQKH 274
                     *********************************************************************************************** PP

                     CHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidfl 204
                      s+a+++f+ ++
      CTQ29080.1 275 ISKALQRFLHYC 286
                     ********9987 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   1.1   2.9e-20   1.7e-16       1      60 []       5      64 ..       5      64 .. 0.98
   2 ?   -2.4   0.1      0.79   4.7e+03      32      46 ..      69      84 ..      69      92 .. 0.69
   3 ?   -0.7   0.0      0.24   1.5e+03      24      36 ..     269     281 ..     266     283 .. 0.83

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 2.9e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lrql++f +v ++gs t+A + L lsq+avs+++ +LE +lgv+Lf+R g++l++ e+G+
  CTQ29080.1  5 LRQLEVFAEVHKSGSTTQASQMLALSQSAVSAALTDLEGQLGVQLFDRVGKRLVVNEHGR 64
                79*******************************************************996 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.79
                HHHHHHHHHHTS-.SE CS
       HTH_1 32 rqikrLEeelgvp.Lf 46
                r+++ LE++l+ + Lf
  CTQ29080.1 69 RALALLERALEIEqLF 84
                5788899998876355 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.24
                 TS-HHHHHHHHHH CS
       HTH_1  24 glsqpavsrqikr 36 
                 +  q+++s++++r
  CTQ29080.1 269 HHRQKHISKALQR 281
                 677999***9997 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.7e-07    0.0016      68     166 ..     160     254 ..     143     287 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.7e-07
                 -HCHCCCCHCCHHH..S--BGGGC-S-B-EEEEE-TTSHHHHHHHHHHC-CEECTE-SSTTSEEESSHHHHHCCHCCETTCCECCCGG-HCCCCCCECT CS
    PBP_like  68 rreqglvvakgnpk..kitnwkdladaplrlvnRetGSGtrdlfdellkkegiskssikgyaqearshlavaaaVaagradvgvgieavaeelkgldfv 164
                 ++e  +  a++ p+  +  ++++l  a++ ++ Re+GSGtr   d++l    +s       + e  ++ a++ aV++g +  +++ + +ae+l +++  
  CTQ29080.1 160 EDELVVFAAPNSPLlaGEVTLQQL--AEAPWILREHGSGTREIVDYVL----LSHLPAFHLGMELGNSEAIKHAVRHGLGISCLSRRVIAEQLASGTLA 252
                 455555555555556666778888..6678999***************....555666777789**************************999776665 PP

                 TC CS
    PBP_like 165 pl 166
                 +l
  CTQ29080.1 253 EL 254
                 55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2356.65
//
Query:       CTQ29081.1  [L=117]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 908.08
//
Query:       CTQ29082.1  [L=349]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     5e-112  373.7  24.7   5.7e-112  373.5  24.7    1.0  1  Cons_hypoth698  Conserved hypothetical protein 698


Domain annotation for each model (and alignments):
>> Cons_hypoth698  Conserved hypothetical protein 698
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  373.5  24.7  3.2e-116  5.7e-112       1     304 []      18     326 ..      18     326 .. 0.99

  Alignments for each domain:
  == domain 1  score: 373.5 bits;  conditional E-value: 3.2e-116
  Cons_hypoth698   1 pGLllllliavlalllakve.llfaklsalllAillGillgn..flklqeqlkaGvafskkklLrlgivllGfrltlsdiakvGlkgvlldiivl 92 
                     pGL l+++++ +al++++ + ++ a +sal+lAil+G+++gn  ++k+++ ++ Gv f+k+ lLrlgi+l+Gfrlt+ +ia+vG++g+l+d+++l
      CTQ29082.1  18 PGLALTAALTGAALWAGSFPaIAGAGFSALTLAILFGMVVGNtvYPKIWQPCDGGVIFAKQHLLRLGIILYGFRLTFAQIADVGVSGILIDVLTL 112
                     79******************999********************99************************************************** PP

  Cons_hypoth698  93 istfllvlllgakllkldkklalLvaaGssiCGasAilavepvikareeevalaiavivllgtvamllyPalatllslt..deefgvfaGasvhe 185
                     +stf+++++lg+k+++ldk++++L++aGssiCGa+A+la+epv+ka++++v++a+a++v++gt+a++lyPa+++ll+++  +e++g+++G+++he
      CTQ29082.1 113 SSTFFIACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEASKVTVAVATVVIFGTIAIFLYPAMYPLLAHWftPETYGIYMGSTMHE 207
                     *******************************************************************************99************** PP

  Cons_hypoth698 186 vaqVvaagelvseeaakiAvivKltRvlllapvvlllslllakreeesetkeakitiPwFvlgFlvvallntlvllpselvsalktlstlllvma 280
                     vaqVvaag++vs++a+++Avi+K++Rv++lap++l+l++ +++   +++ +++kitiPwF+++F++va++n+++llp+++v +l+tl+t+ll+ma
      CTQ29082.1 208 VAQVVAAGHAVSPDAENAAVIAKMLRVMMLAPFLLFLAARVKQLTPAGNGEKSKITIPWFAIMFILVAVFNSFHLLPKAVVDMLVTLDTVLLAMA 302
                     *********************************************************************************************** PP

  Cons_hypoth698 281 laAlglktdlkalkkaglkpllla 304
                     +aAlg++t+++alkkag+kpll+a
      CTQ29082.1 303 MAALGVTTHVSALKKAGAKPLLMA 326
                     *********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       857  (0.0477997); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2552.50
//
Query:       CTQ29083.1  [L=284]
Description: endonuclease IV with intrinsic 3'-5' exonuclease activity [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-43  147.4   0.3    6.3e-43  146.7   0.3    1.3  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
      0.016   15.4   0.2      0.041   14.1   0.2    1.7  1  Flagellin_IN  Flagellin hook IN motif


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.7   0.3     7e-47   6.3e-43       4     210 .]      21     239 ..      19     239 .. 0.91

  Alignments for each domain:
  == domain 1  score: 146.7 bits;  conditional E-value: 7e-47
                   HHHCT-SEEEEECCTCSHHHHC..HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS...HHHHHHHHHHHHHHHHHHTBSEEEEEBCCGB CS
  AP_endonuc_2   4 aaeaGfdgvElfgrdlvpvsel..sdeelrelrkaldelglriaslslftrfgypdederear...reesvdalkraielaaaLGapllvlhpGtag 95 
                   aae+ ++++ lf++++++++++  sde+++e+++a++++++    + ++  +   + +    +    e+s+da+ +++ ++++LG  ll++hpG  +
    CTQ29083.1  21 AAEIEATAFALFTKNQRQWRAAplSDETIAEFKAACEKYHFGPGQILPHDSYLINLGHP---VeeaLEKSRDAFIDEMTRCQQLGLTLLNFHPG--S 112
                   89******************99********************55555555555544444...34469***************************..* PP

                   CTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC..HHHHHHHHHHTTTT.EEEEEEHHHHHHH......TTTHHHHHHHHHGG. CS
  AP_endonuc_2  96 agpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd..eelarlldavdspn.vgvclDtgHllia......eedvddalraladr. 182
                   +++  +eee+++r+aes+n ++++  +egv+ ++E++ag+g++lg   e+la+++d v+++  vgvc+Dt+H+++a       e ++++++a+++  
    CTQ29083.1 113 HLQQIPEEECLARIAESINIALAK--TEGVTAVIENTAGQGSNLGFkfEHLAAIIDGVEDKSrVGVCIDTCHAFAAgydlrsAEACEKTFAAFERIv 207
                   ************************..77***************999************************************777777777777777 PP

                   ....EEEEEE.EESSTTTTSSTTEESTTSSSS CS
  AP_endonuc_2 183 ....ikhvHikDakgdlgagrdrhvpigeGei 210
                       ++ +H++Dak   g+++drh+++geG+i
    CTQ29083.1 208 gfqyLRGMHLNDAKSAFGSRVDRHHSLGEGNI 239
                   7779**************************87 PP

>> Flagellin_IN  Flagellin hook IN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   4.6e-06     0.041      23      48 ..     123     152 ..     122     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.6e-06
                   CHHHHHHHH.HHCCTTTEEEEEEEEC...E CS
  Flagellin_IN  23 lddiadaIN.avssktGVsAsidadg...g 48 
                   l+ ia++IN a +++ GV+A+i +++   +
    CTQ29083.1 123 LARIAESINiALAKTEGVTAVIENTAgqgS 152
                   688*******************99875544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2153.57
//
Query:       CTQ29084.1  [L=564]
Description: fused fructose-specific PTS enzymes: IIBcomponent; IIC components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-19   70.0   0.6    1.2e-18   67.6   0.3    2.2  2  PTS_IIB         PTS system, Lactose/Cellobiose specific IIB s
      7e-17   61.4  31.9      7e-17   61.4  31.9    3.0  2  PTS_EIIC        Phosphotransferase system, EIIC
  ------ inclusion threshold ------
       0.28   10.4   4.8       0.12   11.7   0.8    2.1  2  MFS_Mycoplasma  Mycoplasma MFS transporter


Domain annotation for each model (and alignments):
>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.32   1.9e+03       8      37 ..      11      40 ..       9      64 .. 0.82
   2 !   67.6   0.3     2e-22   1.2e-18       2      86 ..     108     194 ..     107     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.32
                SSHHHHHHHHHHHHHHHHHCTEEEEETTEE CS
     PTS_IIB  8 aGmatSlmaaeklekaakelgieaegeagv 37
                 G a  +ma++ l  aa ++ +e + + ++
  CTQ29084.1 11 LGQARAYMAKTLLGAAAPKAHLELIDNPND 40
                5888999**999999999999777666555 PP

  == domain 2  score: 67.6 bits;  conditional E-value: 2e-22
                 EEEEESSSHHHHHHHHHHHHHHHHHCT....EEEEETTEE..GGGHHHHHHT-SEEEEEESSGGCTHHHHTTSEEEEECTTHHHCCHCHHH CS
     PTS_IIB   2 illaCgaGmatSlmaaeklekaakelg....ieaegeagv..eleaeeiaddaDlvllapqvrvkdlarfagkpvavinikdalgimdgek 86 
                 +++aC++G+a+++maae++e +ak++g    +e++g+ g+  +++ ee+a+ aDlv++a++++v dla+fagkp +++++  al  +++++
  CTQ29084.1 108 AVTACPTGVAHTFMAAEAIETEAKKRGwwvkVETRGSVGAgnAITPEEVAE-ADLVIVAADIEV-DLAKFAGKPMYRTTTGLAL--KKTAQ 194
                 89***************************************9999999999.***********9.*********9999887777..55555 PP

>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4  31.9   1.2e-20     7e-17       3     324 .]     232     495 ..     230     495 .. 0.87
   2 ?   -1.0   2.3      0.12   7.1e+02     103     134 ..     514     543 ..     494     553 .. 0.49

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 1.2e-20
    PTS_EIIC   3 gfmlpiplliagGillglgn.lpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvll 100
                 g+++++p ++agG+ ++l++ +++       +   +   ++  a++++ +g+ +fa++++ +a  ia ++   +++ + ++ + g+la++         
  CTQ29084.1 232 GVSYMLPMVVAGGLCIALSFaFGI-------KA--FEVKDTLAAALMQIGGGSAFALMVPVLAGFIAFSI--ADRPGLTPGLIGGMLAVS--------- 310
                 789*****************4444.......22..22233444789999999******************..566666688888888855......... PP

    PTS_EIIC 101 laagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggsg 199
                                   +++g++g+ii+g+la+y+ + ++   + kLP+s + +    ++p++++l+v l     ++li++++ g l +l ++l+ +g
  CTQ29084.1 311 ------------------GGSGFIGGIIAGFLAGYVAKAIST--KLKLPQSMEALKPILIIPLVSSLIVGL---AMIYLIGKPVAGILAWLTHWLQTMG 386
                 ..................69**********************..99*********************4444...47899***********99******* PP

    PTS_EIIC 200 sllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllgsaaltpflf 298
                   +++ ++g++ +++++++++++++++++ +++ g+l +   q y            ++ ++m +g+ ++la+ ia++ ++++ +k++  ++ + ++++
  CTQ29084.1 387 -TANAVLLGAILGAMMCTDMGGPVNKAAYAFGV-GLLST---QTYA-----------PMAAIMAAGMVPPLAMGIATLVARNKFDKGQREGGKA-ALVL 468
                 .78***************************999.55555...2333...........2445*****************************9999.69** PP

    PTS_EIIC 299 GItepleFgfpfvlnll.lfipallag 324
                 G+ ++ e ++pf ++ +  ++p+++ g
  CTQ29084.1 469 GLCFISEGAIPFAARDPmRVLPCCIVG 495
                 ***************997788888876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.12
    PTS_EIIC 103 agalasakasilgiktlstgvfgaiivgllaa 134
                 +g+l      i+g+ t   g++ ai++g l+a
  CTQ29084.1 514 HGGL--FVLLIPGAITPVLGYLLAIVAGTLVA 543
                 2222..45556666666666666666665544 PP

>> MFS_Mycoplasma  Mycoplasma MFS transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.7    0.0084        50     199     258 ..     303     362 ..     301     367 .. 0.82
   2 ?   11.7   0.8     2e-05      0.12     144     214 ..     340     418 ..     326     433 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.0084
  MFS_Mycoplasma 199 vvyfvglgtavglafvlIltFlaGlflWglqsvlliipheqkeskpkk.vgivfgliWGig 258
                     ++ +++++   g+   +I++FlaG  + ++  + l +p+ ++  kp   + +v++li G++
      CTQ29084.1 303 IGGMLAVSGGSGFIGGIIAGFLAGYVAKAIS-TKLKLPQSMEALKPILiIPLVSSLIVGLA 362
                     6678999999999999*********999985.67899**9999999752678899998887 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2e-05
  MFS_Mycoplasma 144 gayaavlpillilfvlgyvlglfvlspfnKtiyd....rkrflvtlfllgvvlv.li..ailvvyfvglgtavglaf.v 214
                       ++a  pil+i +v ++++gl ++ + +K +        ++l+t+ ++++vl+ +i  a++++ + g+ +++++af v
      CTQ29084.1 340 QSMEALKPILIIPLVSSLIVGLAMIYLIGKPVAGilawLTHWLQTMGTANAVLLgAIlgAMMCTDMGGPVNKAAYAFgV 418
                     5678899******************9999987651112578999**99999986433347899*************943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4121.30
//
Query:       CTQ29085.1  [L=312]
Description: fructose-1-phosphate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-68  230.4   0.0    3.6e-68  230.1   0.0    1.0  1  PfkB          pfkB family carbohydrate kinase
     0.0034   16.8   0.0     0.0051   16.2   0.0    1.2  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.1   0.0     4e-72   3.6e-68      12     297 ..      14     293 ..       5     298 .. 0.96

  Alignments for each domain:
  == domain 1  score: 230.1 bits;  conditional E-value: 4e-72
                 EEEEEECSSH.TTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTTSEEEEEEEE CS
        PfkB  12 idliavsekl.egelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvdedgertivfnr 109
                 +dl++++ ++ +ge++ v+t+  +a+G+g+NvA++l++lg+dv++ g++G+Dn  + + +++++ g+ +++++++++tr +++l++ d++  ++++f  
  CTQ29085.1  14 YDLVGFTPEIeRGEVNLVRTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDN-QDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGE-VTDFNFSG 110
                 89***************************************************.**********************************97.9******* PP

                 GGGGGHHHHHHH.HHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHH.CTESEEEEEHHHHHHHHTSCTHSHH CS
        PfkB 110 gaaadltkeele.ededlleeadllyisgllsselpeavleelaeaaknggtfdpnlldplgaqfkeallell.aladllkpneeElealtgekledie 206
                  +    ++e +  +++++l++ d++ +sg+l+s+++ ++++ + +  +++     ++ d++     eal + l a ++l+kpn++Ele+++g+kl +++
  CTQ29085.1 111 FEVTPGDWERFVnDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQC--PCIIFDSSR----EALVAGLkAAPWLVKPNRRELEIWAGRKLPEMK 203
                 ************9**************************************..778888888....5777777799*********************** PP

                 HHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSSSSST CS
        PfkB 207 ealaalhklkakgaktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvqkkgaia 297
                 ++++a+h+l ++g+++vv++lG+eGal+v+ +ge+++++ p+v+vv+t+GAGDs+vgg++++ll  +s e+ lr+a+avAal+v++++++ 
  CTQ29085.1 204 DVIDAAHALREQGIAHVVISLGEEGALWVNASGEWIAKP-PSVEVVSTVGAGDSMVGGLIYGLLMRESSEHTLRLATAVAALAVSQSNVGI 293
                 ***************************************.**********************************************99875 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.7e-07    0.0051     113     224 ..     174     278 ..     164     295 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.7e-07
                   HHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BTHHHHHHHHHHH CS
  Phos_pyr_kin 113 keeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaerietknthGtGCtlssaiaa 209
                      L     ++ PN  E+e  +g+k+ + +d+ +aa++l+++g  +V+i  g+    e     ++++ +++ + + + +e  +t G+G+++   +  
    CTQ29085.1 174 VAGLKAAPWLVKPNRRELEIWAGRKLPEMKDVIDAAHALREQGIAHVVISLGE----EGA---LWVNASGEWIAKPPSVEVVSTVGAGDSMVGGLIY 263
                   555555566999*************************************9887....233...6788888899999999999999999987665555 PP

                   HHHCTSSHHHHHHHH CS
  Phos_pyr_kin 210 elakgesleeAvkkA 224
                    l   es e++++ A
    CTQ29085.1 264 GLLMRESSEHTLRLA 278
                   555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2581.32
//
Query:       CTQ29086.1  [L=376]
Description: fused fructose-specific PTS enzymes: IIA component; HPr component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-34  117.7   0.0    1.7e-28   99.4   0.0    2.5  2  PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransf
    7.7e-26   90.2   1.6    1.7e-25   89.0   0.1    2.5  3  PTS-HPr     PTS HPr component phosphorylation site
  ------ inclusion threshold ------
      0.088   13.1   0.1       0.44   10.9   0.1    2.2  1  Nif11       Nif11 domain
      0.097   13.2   0.3      0.097   13.2   0.3    2.0  2  Usp         Universal stress protein family


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.0   3.7e-32   1.7e-28       4     141 ..       5     139 ..       3     141 .. 0.94
   2 !   15.7   0.2   2.4e-06     0.011      69     140 ..     210     274 ..     150     277 .. 0.81

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 3.7e-32
                 HCCGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTETCEE----SCCC...BSS-EEEEEEEEEEEE-T-GCC-CEEEEEEE CS
  PTS_EIIA_2   4 tkelifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgigngvAiPHarlea...vkkpaiavlklkepvdfeasdgkpvklifll 99 
                 + + i   ++a +keeai+q+a  l+ ag v +   y++ +l+re++ st +gng+AiPH+++++   v+k+++ v +++++v+++  +g+ + +++ +
  CTQ29086.1   5 SVQDIHPGQQAGNKEEAIRQVAAALVSAGNVADG--YVNGMLAREQQTSTFLGNGIAIPHGTTDTrdqVLKTGVQVFQFPQGVTWG--EGQTAYVAIGI 99 
                 5677888999************************..**************************665567******************..89********* PP

                 E-SSCHH.HHHHHHHHHHHHCSCCHHHHHHC--SHHHHHHHH CS
  PTS_EIIA_2 100 alpekdaehlkilaqLaellkdeefvekLrkakseeeilell 141
                 a+++++  hl +l qL+ +l+d+ ++ +L++a+++ee+++ll
  CTQ29086.1 100 AASSDE--HLGLLRQLTHVLSDDAVAAQLQSATTAEELRALL 139
                 ****98..9******************************998 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 2.4e-06
                 BSS-EEEEEEEEEEEE-T-GCC-CEEEEEEEE-SSCHH.HHHHHHHHHHHHCSCCHHHHHHC--SHHHHHHH CS
  PTS_EIIA_2  69 vkkpaiavlklkepvdfeasdgkpvklifllalpekdaehlkilaqLaellkdeefvekLrkakseeeilel 140
                  +++a+av ++ +  +    d++pv+l++++a+ +++   +++l +L++ll d++  + L+   +++ +l+l
  CTQ29086.1 210 NLRSAVAVSRAANAFTR---DEQPVSLLVTVAMADEQP--TAVLNRLSKLLLDKKAEHLLK--ADAATVLAL 274
                 66788888888888855...59**************96..9************99977777..455555555 PP

>> PTS-HPr  PTS HPr component phosphorylation site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.4   1.1e+04      41      56 ..     159     174 ..     147     178 .. 0.67
   2 ?   -2.0   0.0         1   4.6e+03      39      51 ..     264     276 ..     237     278 .. 0.69
   3 !   89.0   0.1   3.9e-29   1.7e-25       2      80 ..     287     368 ..     286     370 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.4
                 EETTSHHHHHHCTCST CS
     PTS-HPr  41 vnaksilglmsLgvkk 56 
                 v a ++l l +L++++
  CTQ29086.1 159 VAASDLLTLQALNAAR 174
                 6677777777777665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1
                 ..EETTSHHHHHH CS
     PTS-HPr  39 kpvnaksilglms 51 
                  +++a ++l+l++
  CTQ29086.1 264 LKADAATVLALLT 276
                 4588888888876 PP

  == domain 3  score: 89.0 bits;  conditional E-value: 3.9e-29
                 EEEEEEESTCCCSHHHHHHHHHHHTTSSSEEEEEE.......EETTSHHHHHHCTCSTT-EEEEEEESTTHHHHHHHHHHHH CS
     PTS-HPr   2 ekkvtiknekGlhaRpAamlvqaasefksevtlekkd...kpvnaksilglmsLgvkkGeevtvsaeGedeeealealaell 80 
                 + +++++ne+GlhaRp +mlv++ ++f+s++t+++ d   kp+n++s++++++LgvkkG++++++a+Ged+++al+a+ e++
  CTQ29086.1 287 SAEFVVRNEHGLHARPGTMLVNTIKQFSSDITVTNLDgsgKPANGRSLMKVVALGVKKGHRLRFTAQGEDAQQALDAIGEAI 368
                 5789******************************955568**************************************9987 PP

>> Nif11  Nif11 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   9.8e-05      0.44      10      35 ..     113     138 ..     111     141 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.8e-05
       Nif11  10 lekvkqDpalreqlkacsdheevval 35 
                 l++v +D+a ++ql++++++ee+ al
  CTQ29086.1 113 LTHVLSDDAVAAQLQSATTAEELRAL 138
                 6899******************9988 PP

>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.56   2.5e+03      38      66 ..     116     144 ..      93     185 .. 0.55
   2 ?   13.2   0.3   2.2e-05     0.097      14     109 ..     212     320 ..     207     337 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.56
                 EEESSHCCCCCCCHHHHHHHHHHHHHHHH CS
         Usp  38 vidprasgavsdadeeaeeeeleleeael 66 
                 v++++a +a  +++ +aee ++ l ++++
  CTQ29086.1 116 VLSDDAVAAQLQSATTAEELRALLMGEKQ 144
                 33333333333333333333333333222 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHH.............HHHHHHCTTCEEEEEEEESSHHHHHHHHH CS
         Usp  14 eskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleada.............akaaaeaggvkvevvveegdpaeeileva 99 
                  s  A+ +A++   +++ ++ ll  + + + ++++ +++ ++    +++e  l+ada             a++ + a+ v++  + ++  p+++++ + 
  CTQ29086.1 212 RSAVAVSRAANAFTRDEQPVSLLVTVAMADEQPTAVLNRLSKLLLDKKAEHLLKADAatvlalltsddaiAEDVLSAEFVVRNEHGLHARPGTMLVNTI 310
                 6889*********************************************************************************************** PP

                 HHTTSSEEEE CS
         Usp 100 eeedadliVv 109
                 ++++ d+ V+
  CTQ29086.1 311 KQFSSDITVT 320
                 ***9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 3224.37
//
Query:       CTQ29087.1  [L=393]
Description: lactose/glucose efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.6e-48  163.2  70.0    2.6e-35  122.0  36.3    2.0  2  MFS_1       Major Facilitator Superfamily
    7.4e-10   38.2  20.8    1.5e-09   37.2  19.6    2.1  2  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
      0.037   12.6  35.4     0.0053   15.4  22.5    2.7  2  MFS_2       MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0  36.3   4.4e-39   2.6e-35       2     342 ..      21     346 ..      20     350 .. 0.88
   2 !   55.0  25.7     1e-18   6.1e-15       6     172 ..     226     389 ..     218     393 .] 0.89

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 4.4e-39
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyal.gaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslw.lllvlrvlqGl 97 
                 l++afl+++a ++ +p+l+l+l+++ ++ p+ +g+ +t+ a+ g +v+++++Gr sdr G r+ +++++ ll +l+++l+++  +++ ll+++ +l+++
  CTQ29087.1  21 LIVAFLTGIAGALQTPTLSLFLTNEVHVRPAMVGFFFTGSAViGILVSQFLAGR-SDRQGDRKqLIVVCCLLGVLACVLFAWNRNYFiLLFIGVFLSSF 118
                 799************************************888466777777777.5****9999************77777768888566666666666 PP

       MFS_1  98 gagalfpagaaliadwfpkeergrai..gllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpa 194
                 g ++++p + al+++ + ++ r  ++  ++l a +sl+ ++gp+l+ +la  +g++a+++ +a+++++++++++l+lp  ++e++  +++ e       
  CTQ29087.1 119 G-STANPQMFALAREHADRTGREAVMfsSILRAQVSLAWVIGPPLAYALAMGFGFTAMYLSAAAAFIVCGIMVWLFLPSMRKENPVATGRLE------- 209
                 6.9****************988888888********************************************88888888888888877666....... PP

       MFS_1 195 plvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglal 293
                     a +  ++d  l  l+ ++ l++  +s++ + +pl++   l+l+   lagl+++ +a + ++ +l+ag++++r+g+r+ + l+ ++++l+++g++ 
  CTQ29087.1 210 ----APRTHRRDALL--LFSICTLMWGTNSLYIINMPLFIINELHLP-EKLAGLMMGTAAGLEIPTMLIAGYYARRFGKRFLMRLSAVAGVLFYVGMLT 301
                 ....33556888855..56666666667777****************.9*************************************************9 PP

       MFS_1 294 lavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfn 342
                 + ++   +lll++ vl  +  g+  ++ + + +dl+p  +ag+a+ l++
  CTQ29087.1 302 VHTP---ALLLAMQVLNAIYIGILAGIGMLYFQDLMP-GQAGAATTLYT 346
                 9999...888889999999*****************8.99999999997 PP

  == domain 2  score: 55.0 bits;  conditional E-value: 1e-18
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalf 103
                  l+  + s++++++pl++ ++l++ +  +gl++++ a + + ++l++G+ + rfG r ++ l++++ +l+ ++++++ + + lll++ vl ++  g+l+
  CTQ29087.1 226 TLMWGTNSLYIINMPLFIINELHLPEKLAGLMMGTAAGLEIPTMLIAGYYARRFGKRFLMRLSAVAGVLF-YVGMLTVHTPaLLLAMQVLNAIYIGILA 323
                 3334445569999999999***************************************************.66665555566***************** PP

       MFS_1 104 pagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll 172
                  +g+ ++ d+ p+ + g a+ l++ ++ +G i++  l+g++a+ ++++avf+i+ +++++   +  l+ 
  CTQ29087.1 324 GIGMLYFQDLMPG-QAGAATTLYTNTTRVGWIIAGSLAGVVAEIWSYHAVFWIALAMGVVTQAC--LWR 389
                 *************.*********************************************98554..665 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2  19.6   2.6e-13   1.5e-09      15     350 ..      30     342 ..      19     375 .. 0.78
   2 ?   -0.8   0.3     0.091   5.4e+02     156     193 ..     351     383 ..     349     390 .. 0.70

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 2.6e-13
  MFS_1_like  15 lgsll.PYltiylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklevsvaqdvdaektf 111
                  g+l+ P l+++l+ +  + ++ +g+  +   ++ il + +++  +Dr g rk+++++++ll +++ +  lf                      ++ ++
  CTQ29087.1  30 AGALQtPTLSLFLTnEVHVRPAMVGFFFTGSAVIGILVSQFLAGRSDRQGDRKQLIVVCCLLGVLACV--LFA---------------------WNRNY 105
                 5555339999***96889********************************************999888..444.....................45566 PP

  MFS_1_like 112 wilfllvvlasfflaailvlldaatlkel...gedrkdyGrq.rlfGsvGyaifafitGilidhysvnllpysallyvlaallvisllvvlilneteke 206
                 +il+++ v+ s f +++++++ a++ ++    g ++  ++ + r   s+ ++i  ++  +l     +++    + l  +aa++v+ ++v l l+ ++ke
  CTQ29087.1 106 FILLFIGVFLSSFGSTANPQMFALAREHAdrtGREAVMFSSIlRAQVSLAWVIGPPLAYALAM--GFGF--TAMYLSAAAAFIVCGIMVWLFLPSMRKE 200
                 666666666677889999999999877764334444446654366666666664443333222..2222..234588899999**************99 PP

  MFS_1_like 207 sklkvtkslqvllnilknpeviifllvalilgmswgiienFlflYL.kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrf 304
                 + ++    +    ++ ++  +++f + +l+ g+ ++++   + l++ +el  ++ l+G ++   + +eip+ ++a +  +++G ++l+ ++ +a +l +
  CTQ29087.1 201 NPVATGRLE--APRTHRRDALLLFSICTLMWGT-NSLYIINMPLFIiNELHLPEKLAGLMMGTAAGLEIPTMLIAGYYARRFGKRFLMRLSAVAGVLFY 296
                 999988533..3555555555555555555555.5555555888888**************************************************** PP

  MFS_1_like 305 llyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatg 350
                 +++ +++ + l+l ++vL++i +g+l ++++ y ++++p ++ a +
  CTQ29087.1 297 VGMLTVHTPALLLAMQVLNAIYIGILAGIGMLYFQDLMPGQAGAAT 342
                 ***************************************9987754 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.091
  MFS_1_like 156 vGyaifafitGilidhysvnllpysallyvlaallvis 193
                 vG++i+  + G++ + +s +     a++ +++a+ v++
  CTQ29087.1 351 VGWIIAGSLAGVVAEIWSYH-----AVFWIALAMGVVT 383
                 89999999999999999884.....3555555554444 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4  22.5   8.8e-07    0.0053       2     315 ..      20     308 ..      19     313 .. 0.76
   2 ?    2.8   6.6    0.0059        35     228     306 ..     307     387 ..     305     392 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.8e-07
       MFS_2   2 yglgalaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfiwl 100
                 + + a+ ++i+++l +  l+ F+t+ + +++a+vg+++  + ++ +++     ++    s r+G r+ +++++ ++ +++++l+ ++ +     +fi+l
  CTQ29087.1  20 FLIVAFLTGIAGALQTPTLSLFLTNEVHVRPAMVGFFFTGSAVIGILV----SQFLAGRSDRQGDRKQLIVVCCLLGVLACVLFAWNRN-----YFILL 109
                 5677788899999999999******************99887777665....5555566668899999*******************88.....55555 PP

       MFS_2 101 lvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggv.laailafllvlilgglkserkgylifaliialLmllgviivvlgtkerve 198
                 ++  +l     ++ + ++  + + + ++  +Rt   +v + + + + v la ++ ++l+ +l++      g++++ l  a+ ++++ i+v+l+  + + 
  CTQ29087.1 110 FIGVFL----SSFGSTANPQMFALA-REHADRTGREAVMFSSILRAQVsLAWVIGPPLAYALAM----GFGFTAMYLSAAAAFIVCGIMVWLFLPSMR- 198
                 555555....555555555555444.55566665444433333333331333444556566666....689999999999999999999999999664. PP

       MFS_2 199 mrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllga 296
                         +++++ + +        r +l+l+ ++ l + +  ++  ++ +++   l   ++ a ++++++  + + +++++ + a+r+gk+ ++ l+a
  CTQ29087.1 199 --------KENPVATGRLEAPRTHRRDALLLFSICTLMWGTNSLYIINMPLFIINELHlPEKLAGLMMGTAAGLEIPTMLIAGYYARRFGKRFLMRLSA 289
                 ........4455555555555566677888888889999999999999999999999989999999***99**************************** PP

       MFS_2 297 lltivllvlvlllqpsnll 315
                 ++ ++++v++l +++  ll
  CTQ29087.1 290 VAGVLFYVGMLTVHTPALL 308
                 ************9433333 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.0059
       MFS_2 228 illllfllaalalgvlnglllYyltyvlg.ngsaasvfllvv.tisallgiplwqplakrlgkkntyllgalltivllvlv 306
                 +ll++ +l+a  +g+l+g+ ++y+++ +  ++ aa+++++ +  ++ +++  l+ ++a  ++ ++++ +++++ +v  +++
  CTQ29087.1 307 LLLAMQVLNAIYIGILAGIGMLYFQDLMPgQAGAATTLYTNTtRVGWIIAGSLAGVVAEIWSYHAVFWIALAMGVVTQACL 387
                 689999**************9999999988888888888877467777888888888888877766666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       892  (0.0497518); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 3217.32
//
Query:       CTQ29088.1  [L=84]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-05   26.1   3.9    2.7e-05   24.7   3.9    1.7  1  CxxCxxCC  Putative zinc- or iron-chelating domain


Domain annotation for each model (and alignments):
>> CxxCxxCC  Putative zinc- or iron-chelating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   3.9   1.5e-09   2.7e-05       1      71 [.       2      59 ..       2      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.5e-09
    CxxCxxCC  1 eCke.CgaCCkelkvklteedlerlkaaevaeeeeeskkiakadgrCvfldeetklCkiYe..eRpkicrlfpa 71
                eC++ CgaCC + +++ ++  + + k+a++               rC++l++++ lC i+    Rpk+c   + 
  CTQ29088.1  2 ECRTdCGACCIAPSISSPIPGMPQGKPANT---------------RCIQLSKRN-LCLIFGspLRPKVCASLQP 59
                69999*************************...............********6.*****97789****97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      124  (0.00691617); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 678.97
//
Query:       CTQ29089.1  [L=190]
Description: putative translation elongation factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-19   68.1   0.0    9.1e-19   67.0   0.0    1.6  1  Elong-fact-P_C  Elongation factor P, C-terminal
    2.4e-16   59.5   0.3      6e-16   58.2   0.2    1.8  2  EFP_N           Elongation factor P (EF-P) KOW-like domain
    3.4e-14   52.6   2.1      6e-14   51.8   2.1    1.4  1  EFP             Elongation factor P (EF-P) OB domain


Domain annotation for each model (and alignments):
>> Elong-fact-P_C  Elongation factor P, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   1.5e-22   9.1e-19       1      56 []     133     188 ..     133     188 .. 0.99

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 1.5e-22
                     EEEEEEE--SSS--SSSSTTEEEEEETTS-EEEEETT--TT-EEEEETTTTEEEEE CS
  Elong-fact-P_C   1 VeleVvetepgvkGdtasggtKpatletGaevqVPlFIneGdkIkvdTrtgeYvsR 56 
                     V+le++et pg+kG +as+ tKpat++tG+++qVP +  +G+kI++  ++  Y++R
      CTQ29089.1 133 VDLEIIETAPGIKGASASSRTKPATMSTGLVIQVPEYLTTGEKIRIHIEECRYMGR 188
                     89****************************************************98 PP

>> EFP_N  Elongation factor P (EF-P) KOW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.2     1e-19     6e-16       2      58 .]       4      62 ..       3      62 .. 0.91
   2 ?   -2.5   0.0      0.93   5.6e+03      32      48 ..     148     164 ..     137     166 .. 0.62

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1e-19
                GGG--TT-EEEETTEEEEEEEE.EEEE.ETTS--EEEEEEEETTTS-EEEEEEETT-EE CS
       EFP_N  2 aselkkGlvieidgklyvVlef.ehvk.pGkGqafvrvklknlrtGakvektfkagdkv 58
                a+e+kkG+v++++gkl +V+ +   ++  ++ ++++++++ ++rtG kve++fk++d v
  CTQ29089.1  4 ANEIKKGMVLNYNGKLLIVKNIdIQSPsARGAATLYKMRFSDVRTGLKVEERFKGDDIV 62
                9*******************996566656788899*********************976 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.93
                 --EEEEEEEETTTS-EE CS
       EFP_N  32 qafvrvklknlrtGakv 48 
                 +a  r+k   + tG ++
  CTQ29089.1 148 SASSRTKPATMSTGLVI 164
                 45566666666666555 PP

>> EFP  Elongation factor P (EF-P) OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   2.1     1e-17     6e-14       3      53 ..      72     124 ..      70     125 .. 0.93

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 1e-17
                 EEEEEEETTEEEEEETTT--EEEEEHHHHTTGCGG--TT-E..EEEEEETTEE CS
         EFP   3 mqylYkdgdeyvFMdnetYeqielpkeqlgdaakfLkEgme..vtvllyegep 53 
                 + ++Y dg+eyvFMd+e+Y  ++++keq++++++f+ Eg +  ++vl+++g+ 
  CTQ29089.1  72 VDFSYVDGNEYVFMDKEDYTPYTFTKEQIEEELQFIPEGGMpdMQVLTWDGQL 124
                 679***********************************6666*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1343.58
//
Query:       CTQ29090.1  [L=396]
Description: mannonate hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.4e-154  512.9   0.0   3.9e-154  512.7   0.0    1.0  1  UxuA          D-mannonate dehydratase (UxuA)
    2.4e-07   30.4   0.1    1.3e-06   28.0   0.1    2.1  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
  ------ inclusion threshold ------
        0.1   12.3   0.0       0.26   11.0   0.0    1.6  2  RE_XamI       XamI restriction endonuclease


Domain annotation for each model (and alignments):
>> UxuA  D-mannonate dehydratase (UxuA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  512.7   0.0  6.5e-158  3.9e-154       1     349 [.       1     388 [.       1     389 [. 0.99

  Alignments for each domain:
  == domain 1  score: 512.7 bits;  conditional E-value: 6.5e-158
                 S-BEEE---T.T-SS-HHHHHHH.T--EEEE--TTS-TTS---HHHHHHHHHHHHHTT-EEEEEE-----HHHHHT-TTHHHHHHHHHHHHHHHHHTT- CS
        UxuA   1 meltlrwygeeddpvsleeirqipGvkgvvsalhdipagevWekeeilklkeeiekagltlevvesvpvhediklgteerdryienykqtirnlakiGv 99 
                 me+t+rwyg+ +dpvsl+++rq+ G++gvv+alh+i++g+vW+++ei+++++ + ++glt++vves+pvhedik++ +++  +i+ny+q+irnla +G+
  CTQ29090.1   1 MEQTWRWYGP-NDPVSLDDVRQA-GATGVVTALHHIANGQVWPVDEIKARQALLAAKGLTWSVVESIPVHEDIKTHSGQYATWIANYQQSIRNLAACGI 97 
                 9*********.************.*************************************************************************** PP

                 -EEEE---SS--S--SEEEEE-TTS-EEEEE-HHHHHHHHHHTT--TTGGGGS-.............................-TT-S---.HHHHHHH CS
        UxuA 100 kvvCYnfmpvldWtrtdleykledgskalrfdkkeiealelkilrrkeaekeyt.............................lPgaeeer.ldelrel 168
                 ++vCYnfmp+ldWtrtdley+l+dgs+alrfd+++++a+el+il+r+ ae++y+                             lPgaee++ ld++r  
  CTQ29090.1  98 DTVCYNFMPILDWTRTDLEYELPDGSRALRFDQIAFAAFELHILKRPGAEADYSeeeqrqaevyfkamseadidkltrniiagLPGAEEGYtLDQFRAR 196
                 *************************************************************************************************** PP

                 HGCCTT--HHHHHHHHHHHHHHHHHHHHHHT-EEEE---SSSS-BTTB--SSSSHHHHHHHHHH--STTEEEEEEHHHHTTSTT--HHHHHHHHGGGEE CS
        UxuA 169 leaykkideeklrenlayFlkeiiPvaeevgvklaihPDDPPlpifGlpRivstkedlqrlldlvdspangitlCtGslgaradndlvemikefadriy 267
                 l++y++id+++lren+ayFl++i+Pv+eevg++la+hPDDPP+pi+GlpRivst+ed+q+l ++vds +ng+t+CtGs+g+radndlv+m+++f+dri+
  CTQ29090.1 197 LAEYDHIDKAQLRENMAYFLRAIVPVCEEVGIRLAVHPDDPPRPILGLPRIVSTIEDMQWLKETVDSINNGFTMCTGSYGVRADNDLVKMVETFGDRIH 295
                 *************************************************************************************************** PP

                 EEE--EEEE-SSTT-EEEE-TTSSSS-HHHHHHHHHHHHHHH.........-EE-----B-GGGG..--STT--HHHHHHHHHHHHHHHHHHH CS
        UxuA 268 FahlRnikreedeksFveaahleGsvdlaevvkalleeeyrr.........ylRpDhgrlllddk..klrPGYslidRllgiaylrGlleale 349
                 F+hlR++ re ++k+F+eaahl+G+v++++vv a+l ee rr         + RpDhg+++ldd   k++PGYs+i+Rl+g+a++rG++ al+
  CTQ29090.1 296 FTHLRSTCREANPKTFHEAAHLSGDVNMVAVVDAILREEQRRkqagdlrpiPFRPDHGHQMLDDLrkKTNPGYSAIGRLKGMAEVRGVELALK 388
                 *****************************************99*********************9889********************99986 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   2.2e-10   1.3e-06      26     188 ..      41     299 ..      16     315 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.2e-10
                   HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHC..HTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCC........................... CS
  AP_endonuc_2  26 sdeelrelrkaldelglriaslslftrfgypded..erearreesvdalkraielaaaLGapllvlhpGt........................... 93 
                     +e+++ +++l++ gl+ ++++  + +++  ++  + ++     ++++++ i+  aa+G++++  ++                             
    CTQ29090.1  41 PVDEIKARQALLAAKGLTWSVVESIPVHEDIKTHsgQYATW----IANYQQSIRNLAACGIDTVCYNFMPildwtrtdleyelpdgsralrfdqiaf 133
                   36778888888889999977777666666666664444444....9999999999999999996555333559999999999999999999999999 PP

                   ...............................................................GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEE CS
  AP_endonuc_2  94 ...............................................................agagpkgseeeawerlaeslneladyaekegvkl 127
                                                                                     ++  ++++ +e++a  l+++++++e++g++l
    CTQ29090.1 134 aafelhilkrpgaeadyseeeqrqaevyfkamseadidkltrniiaglpgaeegytldqfrarLAEYDHIDKAQLRENMAYFLRAIVPVCEEVGIRL 230
                   999999999999999999999999999999999999999999999999999*99999999999558999999************************* PP

                   EEE--TTTTSSSTC.......HHHHHHHHHHTTTTEEEEEEHHHHHHH.TTTHHHHHHHHHGGEEEEEE CS
  AP_endonuc_2 128 alEtlagsgvelgd.......eelarlldavdspnvgvclDtgHllia.eedvddalraladrikhvHi 188
                   a+++ +++   lg        e+++ l + vds n g+++ tg +  +  +d+ +++++++dri++ H+
    CTQ29090.1 231 AVHPDDPPRPILGLprivstiEDMQWLKETVDSINNGFTMCTGSYGVRaDNDLVKMVETFGDRIHFTHL 299
                   *********87777*******99999999999999**********9999*******************9 PP

>> RE_XamI  XamI restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.3e-05      0.26      70     126 ..     283     340 ..     253     347 .. 0.82
   2 ?   -3.1   0.0      0.86   5.1e+03      16      40 ..     355     380 ..     351     389 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.3e-05
     RE_XamI  70 vaeiilrlaDrdiFtWleee.repteaeieraavivadrLlgavadpiirnaqerRql 126
                 ++++++   Dr  Ft l ++ re++ +  + aa ++ d+ + av d i+r  q r+q 
  CTQ29090.1 283 LVKMVETFGDRIHFTHLRSTcREANPKTFHEAAHLSGDVNMVAVVDAILREEQRRKQA 340
                 466788899*******9754288888999**************************996 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.86
     RE_XamI  16 eiLptlRmlacPPiar.DrLiglaev 40 
                 ++L  lR  + P  ++  rL+g+aev
  CTQ29090.1 355 QMLDDLRKKTNPGYSAiGRLKGMAEV 380
                 67888999999987653899999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2819.24
//
Query:       CTQ29091.1  [L=488]
Description: putative sugar dehydrogenase, NAD-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-96  321.1   0.0    6.2e-96  320.6   0.0    1.2  1  Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
    3.1e-50  170.2   0.0    4.8e-50  169.6   0.0    1.3  1  Mannitol_dh    Mannitol dehydrogenase Rossmann domain


Domain annotation for each model (and alignments):
>> Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.6   0.0  6.9e-100   6.2e-96       1     246 []     216     462 ..     216     462 .. 0.99

  Alignments for each domain:
  == domain 1  score: 320.6 bits;  conditional E-value: 6.9e-100
  Mannitol_dh_C   1 esvgfpntmVDRIvpaatddelakleeelgveDplavtvEpFiqWviednfvkgrpelelvgvelvedvepyeerKlriLNggHaalaylgalaGy 96 
                    ++v+fp tmVDRIvpaat+++la++++ lgv+Dp+a+++EpFiqWv+ed+fv+grp++e +gv++++dv p+e++Klr+LNg+H++la+lg+laG+
     CTQ29091.1 216 DNVSFPGTMVDRIVPAATPESLAEIAAVLGVDDPCAISCEPFIQWVVEDHFVAGRPAWETAGVQMTDDVLPWEQMKLRMLNGSHSFLAWLGYLAGH 311
                    69********************************************************************************************** PP

  Mannitol_dh_C  97 qtiheamkdeeiraivkkllteevapllkkvdeqdleeYadkiieRFsNpyikdtvervaldGsqklpkrilpslrrlikagtlpellalgvalwi 192
                    ++i+++m d+ +r ++++l+ +e+ap+l    ++dl +Yad++i+RFsNp++k++++++a+dGsqklp+r+l+ +r ++++++++ llalgva+w+
     CTQ29091.1 312 AHISDCMRDDVFRRAARQLMLDEQAPTLTI-TGVDLLAYADSLIARFSNPALKHRTWQIAMDGSQKLPQRMLDGIRVHLARDSRWPLLALGVAGWM 406
                    ******************************.***************************************************************** PP

  Mannitol_dh_C 193 rylegvaeggnyiekeDpqleelqe..aallakervkavlaekeileedlaqnkel 246
                    ry++g++++g+ i+++Dp ++++++  a+  +++rv+a+l  +ei++ dl++n+++
     CTQ29091.1 407 RYVSGTDDAGQTIDVRDPLVDKIRQrvAQSDEQQRVDALLGLEEIFGRDLPHNAQF 462
                    *************************77788899*******************9986 PP

>> Mannitol_dh  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.6   0.0   5.4e-54   4.8e-50       2     151 .]      26     188 ..      25     188 .. 0.99

  Alignments for each domain:
  == domain 1  score: 169.6 bits;  conditional E-value: 5.4e-54
                  EEEEES-SHHHHHTHH.HHHHHHTT--TT-EEEEEE-STTHH.HHHHHTTTT-EEEEE-SSS---EEEE--EEEEEEGGG-.HHHHHHHHTSTT--EE CS
  Mannitol_dh   2 rivhfGaGnfhRahqa.yiddLlaeegldwgivevnlrevda.reaLkaqdelyvviekgeeskearlvgsvnavlsveed.lealieamaePeiriv 96 
                  rivhfG+G+fhRahqa  +d++l++ g dwgi+e++l ++d  +++L++qd+l +v+ekg+++++  ++g+v+++l++  d l+a+ie+++eP+++iv
   CTQ29091.1  26 RIVHFGFGAFHRAHQAlLTDRVLNNVGGDWGICEISLFSGDTlMSQLREQDHLFTVLEKGADGNQPIVIGAVHECLNARLDsLAAIIEKFCEPQVAIV 123
                  8******************************************************************************999**************** PP

                  EE---TTT..BE.TTTEB-TTSHHHHHHHH-TT.......HHHHHHHHHHHTT----EEEE-SS- CS
  Mannitol_dh  97 sltvtekG..id.atgeletdlpaiaadlakpe.......llvealkrrraaglkpltiisCdnv 151
                  slt+tekG  id atg+l+ ++p+i +dl++p+       +lveal+rrr++gl+p+t++sCdn+
   CTQ29091.1 124 SLTITEKGycIDpATGKLDPTHPRIIHDLENPTlpqsapgILVEALARRRERGLPPFTVLSCDNI 188
                  ****************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3710.70
//
Query:       CTQ29092.1  [L=325]
Description: putative enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-39  134.3   0.0    4.5e-39  133.8   0.0    1.2  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
    2.8e-06   27.2   0.0    6.4e-06   26.0   0.0    1.6  1  CobW_C           Cobalamin synthesis protein cobW C-terminal 
  ------ inclusion threshold ------
      0.038   14.3   0.0      0.086   13.1   0.0    1.7  1  AAA_22           AAA domain
       0.04   13.0   0.0       0.07   12.2   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
       0.23   11.2   0.0       0.34   10.6   0.0    1.2  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0   1.3e-42   4.5e-39       4     162 ..       6     165 ..       3     178 .. 0.94

  Alignments for each domain:
  == domain 1  score: 133.8 bits;  conditional E-value: 1.3e-42
                 EEEESTTCCHHHHHHHHH.CT--SS-EEEEESS-SSCHCCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEEEEEECTTTTHHHH.. CS
        cobW   4 vltGflGsGKTtLlnhll.enraglklavivNefgevsiDaellretgveivelenGciCctlredllkelealeereerldviliEttGlaePapv.. 99 
                 ++tGflGsGKTt + hll ++ a++k+av+vNefgev+iD++ll+++g+ + e+  Gc+Cc     ++  l+ l+++  ++d++liE tGl +P+++  
  CTQ29092.1   6 LITGFLGSGKTTSILHLLaQKPADEKWAVLVNEFGEVGIDGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQG-KPDRLLIEPTGLGHPKQIld 103
                 79****************99**********************************************************.9*****************88 PP

                 HTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHH CS
        cobW 100 afteeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeeallekl 162
                 ++t+  ++  + l a+++++D ++l +e+  ++++++dqlaaad++v nK D  ++e   ++l
  CTQ29092.1 104 ILTAAVYEPWIDLRATLCILDPRQLLDERAVSNDNFRDQLAAADIIVANKSDRETAESA-RAL 165
                 888999999*******************************************9888743.444 PP

>> CobW_C  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.8e-09   6.4e-06       3      92 ..     242     321 ..     241     323 .. 0.89

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.8e-09
      CobW_C   3 sfvfrarrpfdperleelleeelpegilRaKGivwlagkpdalvlqgvggrlrlepagawwaaededrrseLVfIGr.dldkealeeaLda 92 
                 +++f a+  fd   l e+ +    +++ R+KG++++a+   a+ ++  g+ l++e      +    +++s++ +I   + d++al+++L +
  CTQ29092.1 242 GWIFDAETVFDTIGLLEWARL---APVGRVKGVMRIAEG--AVRINRQGEDLHIETL----S--VAPPDSRIELISAnEADWNALQTSLLR 321
                 6999****************9...99*************..**************22....2..25678******876999*****99975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.4e-05     0.086       9      34 ..       6      31 ..       3     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.4e-05
      AAA_22  9 vvtGesGtGKTtllrrlleqldeeak 34
                ++tG  G+GKTt++  ll q+++++k
  CTQ29092.1  6 LITGFLGSGKTTSILHLLAQKPADEK 31
                69******************987765 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     2e-05      0.07     133     205 ..       6      90 ..       2      91 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2e-05
       T2SSE 133 lvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnak...........kakvtfadllraaLRl.rPDrimv 205
                 l++G  gsGKtt++  ll++ +++++  v+v    E+ ++ga      a             ++++++ +l ++LR+ +PDr+++
  CTQ29092.1   6 LITGFLGSGKTTSILHLLAQKPADEKWAVLVNEFGEVGIDGALLADSGALlkeipggcmccVNGLPMQVGLNTLLRQgKPDRLLI 90 
                 89***********************************999986655443344589999998889999999999999867998876 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.5e-05      0.34       2      21 ..       6      25 ..       5      41 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.5e-05
  Viral_helicase1  2 vvhGvpGcGKStlirkllrt 21
                     ++ G+ G+GK+t+i +ll +
       CTQ29092.1  6 LITGFLGSGKTTSILHLLAQ 25
                     699**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2365.34
//
Query:       CTQ29093.1  [L=237]
Description: undecaprenyl pyrophosphate phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-13   48.6   4.7    6.4e-13   48.6   4.7    1.9  2  PAP2             PAP2 superfamily
    9.8e-07   28.6  11.6    1.9e-06   27.7  11.6    1.5  1  PAP2_3           PAP2 superfamily
  ------ inclusion threshold ------
      0.081   13.5   0.4      0.081   13.5   0.4    2.5  2  PAP2_C           PAP2 superfamily C-terminal


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.8      0.31   1.8e+03      66      76 ..      53      63 ..      14      87 .. 0.59
   2 !   48.6   4.7   1.1e-16   6.4e-13       6     127 ..      99     212 ..      93     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.31
        PAP2 66 alalllalllr 76
                 ++++l ++++
  CTQ29093.1 53 HAYAWLLAIIN 63
                33333333333 PP

  == domain 2  score: 48.6 bits;  conditional E-value: 1.1e-16
        PAP2   6 llalalaalltsvlKdlvg..rpRPfflaeetkldtqvstletseskeakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvalsR 102
                 l++l++a+++++++ +l+   r  P+     ++ +++v ++ t+  ++ k+sfP  H ++ + +a +++ +++r+           ++l+  v++a+ R
  CTQ29093.1  99 LVMLLAAVIINQLAQHLMPvqRASPSLFFSDITRVSDVVNFPTK--DASKDSFPGDHGMMLLIFASFMWRYFGRRALG--------VALIIFVVFAFPR 187
                 57888888999999888764488899999999999999998876..799*****************************........7888889****** PP

        PAP2 103 lylgvHflsDvlaGlliGialaala 127
                 + +g+H++sD+ +G l +++++a  
  CTQ29093.1 188 VMIGAHWFSDIAVGSLTAVLIGAPW 212
                 ******************9998755 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7  11.6   3.2e-10   1.9e-06       6     187 ..      37     208 ..      33     210 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 3.2e-10
      PAP2_3   6 ldralgldweaalnklllahpa.lavilalaYaslhfqvtllvlvllflrrrerlreflttlllatll.gllvyalfPaagPrll..eeagfvdtvaaa 100
                 +d a+++ + + +  +  a ++ la+i + a+++  ++++  +++  +l+ ++++r+ ++++ l++ll ++++  l   + P+    ++  f d+ +++
  CTQ29093.1  37 VDSAIFHFFNHGVS-VSHAYAWlLAIINNRAFDACSLLAMGCLMLSYWLKAPTAGRRQIAIMGLVMLLaAVIINQLAQHLMPVQRasPSLFFSDITRVS 134
                 78999999999999.999999999999******977777777777766888888887777776666664666666666666622222344466666666 PP

      PAP2_3 101 slagalrdgasravllrgtienglaafPSlHvawallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvalalva 187
                 ++++         +++++   ++  +fP  H ++ l++a ++wr+  +r    +al+++v+ ++  v  g H + D+++G ++a+++
  CTQ29093.1 135 DVVN---------FPTKD---ASKDSFPGDHGMMLLIFASFMWRYFGRR-ALGVALIIFVVFAFPRVMIGAHWFSDIAVGSLTAVLI 208
                 6666.........44444...46679***********************.777888999999********************99986 PP

>> PAP2_C  PAP2 superfamily C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.8      0.31   1.8e+03      19      19 ..      77      77 ..      38     115 .. 0.57
   2 ?   13.5   0.4   1.4e-05     0.081      10      68 ..     153     208 ..     147     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.31
      PAP2_C 19 l 19
                +
  CTQ29093.1 77 C 77
                1 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.4e-05
      PAP2_C  10 HtvvltlavlfileyspkklailkvillllallglfliiasrkHYtvDVllglyittlv 68 
                 H ++l++++ f+++y  ++   l v l+ + +++ f  ++   H+  D+ +g ++++l+
  CTQ29093.1 153 HGMMLLIFASFMWRYFGRRA--LGVALI-IFVVFAFPRVMIGAHWFSDIAVGSLTAVLI 208
                 99*****************8..555444.444455556666889999****99988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1835.67
//
Query:       CTQ29094.1  [L=189]
Description: putative peptidase, outer membrane lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-34  116.1   0.0      1e-33  115.5   0.0    1.3  1  NLPC_P60       NlpC/P60 family
     0.0012   19.0   0.0        0.6   10.2   0.0    2.3  2  Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX
     0.0064   16.4   0.0      0.013   15.4   0.0    1.4  1  PCYCGC         Protein of unknown function with PCYCGC motif
  ------ inclusion threshold ------
      0.022   15.1   0.0      0.045   14.1   0.0    1.5  1  LRAT           Lecithin retinol acyltransferase
       0.04   12.8   0.0      0.062   12.2   0.0    1.2  1  DHQS           3-dehydroquinate synthase II
      0.054   13.2   0.0        1.2    8.8   0.0    2.5  3  Cupin_3        Protein of unknown function (DUF861)
       0.13   11.9   0.0       0.38   10.4   0.0    1.7  2  DUF1287        Domain of unknown function (DUF1287)


Domain annotation for each model (and alignments):
>> NLPC_P60  NlpC/P60 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   0.0   3.9e-37     1e-33       1     105 []      80     184 ..      80     184 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 3.9e-37
                 T-BB-TT--BTTEB-HHHHHHHHHHTT.T----SSHHHHCCCSEE..EEGGG--TTEEEEESGTGGESEEEEEEETTEEEEEE.TTEEEEEETTSTTBH CS
    NLPC_P60   1 gkpYrwGGkspsgfDCsglvryafaka.gielprssgeqeaagkkkeiskselkrGDLvffktkkgisHvgiYlgngkmlhas.sekvsvsslsekywk 97 
                 g++Yr GG++++g+DCs++v+ +f+++ g+elprs++eq++ gk+  is+++l++GDLv+f+ +++ +HvgiYlgn++++has s++v++ss++e+ywk
  CTQ29094.1  80 GVRYRLGGSTRKGIDCSAFVQRTFREQfGLELPRSTSEQQETGKS--ISRAQLRTGDLVLFRAGSTGRHVGIYLGNNQFVHAStSSGVTISSMDEPYWK 176
                 789******************************************..**************************************************** PP

                 SCEEECCE CS
    NLPC_P60  98 krllgvrr 105
                 kr+ ++rr
  CTQ29094.1 177 KRYNEARR 184
                 ***99886 PP

>> Peptidase_C92  Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0028       7.2      80     132 ..      66     117 ..      58     132 .. 0.80
   2 !   10.2   0.0   0.00024       0.6      26      60 ..     142     172 ..     129     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0028
  Peptidase_C92  80 eqrqkaaeaalrrlgkpYdfgFeleddrlYCsklVakaykealgikvktvell 132
                    +++++++++  +  g+ Y +g   + + + Cs +V + ++e+ g+++++ ++ 
     CTQ29094.1  66 DVKSRLMDQYASWKGVRYRLG-GSTRKGIDCSAFVQRTFREQFGLELPRSTSE 117
                    566777777777888888888.66688899***************99987655 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00024
  Peptidase_C92  26 sefkHvgivvgeegderlvveaaakegvrvtpLse 60 
                    s   Hvgi++g+++     v+a++++gv++++++e
     CTQ29094.1 142 STGRHVGIYLGNNQF----VHASTSSGVTISSMDE 172
                    5568**********9....9**9********9997 PP

>> PCYCGC  Protein of unknown function with PCYCGC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.9e-06     0.013       4      54 ..      19      68 ..      17      81 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.9e-06
      PCYCGC  4 llalllsgCssdeaaeqeadhaehsassgdiqeetasadvlPtfldeqdee 54
                 +a+lls+Css+++a + ++ ++h++ sgd+    as+d+  t++ + d +
  CTQ29094.1 19 AVAVLLSACSSTSTARNMHS-ETHAVGSGDLSSLQASQDEFETMVRNLDVK 68
                6899********99876555.69999***************9999987654 PP

>> LRAT  Lecithin retinol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.8e-05     0.045       2      42 ..     129     170 ..     128     188 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
                 ---TT-EEEEE-..SSSEEEEEEEETTEEEEEE-SB....... CS
        LRAT   2 klkrGdllevsR..tlyeHhgiyvGdgkVvHltpestsekski 42 
                 +l+ Gdl+  +R   + +H giy+G+++ vH + +s+ + s++
  CTQ29094.1 129 QLRTGDLVL-FRagSTGRHVGIYLGNNQFVHASTSSGVTISSM 170
                 578899988.55467889**************98774444444 PP

>> DHQS  3-dehydroquinate synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.4e-05     0.062     314     344 ..     120     150 ..     115     155 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.4e-05
        DHQS 314 edgkaisvteLkeGdevlvyleekaRHfGik 344
                 e gk+is ++L++Gd vl +  +++RH+Gi 
  CTQ29094.1 120 ETGKSISRAQLRTGDLVLFRAGSTGRHVGIY 150
                 6789*************************86 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.12   2.9e+02      41      56 ..      36      51 ..      29      62 .. 0.81
   2 ?   -2.5   0.0       1.7   4.3e+03      57      72 ..      90     105 ..      88     107 .. 0.81
   3 ?    8.8   0.0   0.00048       1.2      45      62 ..     124     144 ..     115     147 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.12
                TTTEEEEEETTEEEEE CS
     Cupin_3 41 eggetvelraGDlvvl 56
                 ++et++++ GDl  l
  CTQ29094.1 36 MHSETHAVGSGDLSSL 51
                4799********9665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.7
                 -TTEEECCCEEEEEEE CS
     Cupin_3  57 pkglsgtwdvsetvrK 72 
                 +kg  +  +v+ t+r 
  CTQ29094.1  90 RKGIDCSAFVQRTFRE 105
                 6899999999999885 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00048
                 E...EEEETTEEEEE-TTEEE CS
     Cupin_3  45 t...velraGDlvvlpkglsg 62 
                      +lr GDlv +++g++g
  CTQ29094.1 124 SisrAQLRTGDLVLFRAGSTG 144
                 444589*************98 PP

>> DUF1287  Domain of unknown function (DUF1287)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.51   1.3e+03      22      52 ..      82     113 ..      63     122 .. 0.69
   2 ?   10.4   0.0   0.00015      0.38      97     129 ..     119     152 ..      99     162 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.51
     DUF1287  22 gYPnGdvpeeeGvCtDvviralrka.gidLqk 52 
                  Y  G  +++   C+  v r++r++ g++L +
  CTQ29094.1  82 RYRLGGSTRKGIDCSAFVQRTFREQfGLELPR 113
                 55555555554558889999998877777755 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00015
     DUF1287  97 ltvskdaed.eyqpGdivvfkleekleHigivsd 129
                  ++ k++++ + ++Gd+v+f+  ++ +H+gi   
  CTQ29094.1 119 QETGKSISRaQLRTGDLVLFRAGSTGRHVGIYLG 152
                 333344555689******************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1404.17
//
Query:       CTQ29095.1  [L=520]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-62  210.4   0.1    3.8e-62  209.9   0.1    1.2  1  EAL        EAL domain
    1.6e-41  142.1   0.5    5.7e-40  137.0   0.1    2.2  2  CSS-motif  CSS motif domain associated with EAL


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.9   0.1   4.2e-66   3.8e-62       7     238 .]     271     500 ..     265     500 .. 0.96

  Alignments for each domain:
  == domain 1  score: 209.9 bits;  conditional E-value: 4.2e-66
                 HCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCH.TT--EEEEEE--CHHCC-CCHHH CS
         EAL   7 alenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeq.ldadiklsinlspasladeefle 104
                  ++n++++++yQPvv+++t ++ g+e+l+rw+hp  g i+p+ f++lae ++++  l+ ++l  + +d++ l ++ l++++kl +n+spa+l+ ++f +
  CTQ29095.1 271 GIKNNQFYIVYQPVVNAQTLRISGVEVLMRWRHPVVGEIPPDVFINLAETQQMIVPLTHHLLALIASDAAVL-KRiLPRGVKLGLNISPAHLQADSFRD 368
                 589****************************************************************99999.6878********************** PP

                 HHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHHCC CS
         EAL 105 elrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalialake 203
                 ++++++++ + ++ ++vle+te++++++++++  +++a L+++G+ ia+ddfgtg+s+l yl r+++d++K+dr +++ + ++  +  +++a+++l+++
  CTQ29095.1 369 DMLRFAAALPADHFHVVLEVTERAMIDKEKSM--ANFAWLHRQGFEIAIDDFGTGHSALIYLERYNFDYLKIDRGFVQAIGTETVTSPVLDAVLTLSRR 465
                 ******99***************997777777..6**************************************************************** PP

                 CT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 204 lgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 l++++vaegVet+eq+e+lr  g++++QGy +s+p
  CTQ29095.1 466 LKLMTVAEGVETQEQAEWLRGQGVHFLQGYWISRP 500
                 *********************************99 PP

>> CSS-motif  CSS motif domain associated with EAL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.1   6.3e-44   5.7e-40       2     204 ..      40     236 ..      39     241 .. 0.94
   2 !    3.4   0.0     0.005        45     106     158 ..     294     346 ..     281     390 .. 0.77

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 6.3e-44
   CSS-motif   2 qqqldalaeralerledvldqadqaldelqplagrpCseahlaaLrrivafspyvrdiglvkdgrlyCSSlwGeldlplpllppdltsrdgvrlwllrg 100
                 ++++da  + + ++l +++++++q++d lqpl+++pC +++ + L++ +afsp+vr+++lvk+g+ +CSS++G++++pl++l p+++ ++ v++ +l+g
  CTQ29095.1  40 AERFDAIINNVNTYLKSYFHDLRQTIDGLQPLVDQPCENID-SGLTSHAAFSPNVRAFLLVKNGIAFCSSATGAMNTPLSQLIPAIDISKPVAMAILPG 137
                 6899*************************************.********************************************************* PP

   CSS-motif 101 tplvpdrpalvlrrgnyavvispgv..fidgqylpelllavsssdgeqlalvvgpaall.ldgrvlslaeliasearssgalyvrakserypltvvvya 196
                 tp++p+ +al+l+ g++++ +s g+   i+ +++p++l+++ + d  ++al+++++a++ ++ r+ + ++l++++ r       +a++e+ pl v +ya
  CTQ29095.1 138 TPMMPKSAALALWVGKPGDQNS-GIfvSINANLTPYILYSARQNDFSGIALAIDHTAIStFSNRLVDPQTLHNAPIR-------QAQIEGLPLKVYLYA 228
                 *******************877.99778888888**********************999998888888888888888.......*************** PP

   CSS-motif 197 ppasllar 204
                 + + + + 
  CTQ29095.1 229 NSWLAENT 236
                 99987766 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.005
   CSS-motif 106 drpalvlrrgnyavvispgvfidgqylpelllavsssdgeqlalvvgpaall...l 158
                 +  +l+ +r+  ++ i p+vfi++  ++ +   ++   ++ lal++++aa l   l
  CTQ29095.1 294 GVEVLMRWRHPVVGEIPPDVFINLAETQQM---IVPLTHHLLALIASDAAVLkriL 346
                 66799***************8887766555...56666666888888887764443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3540.37
//
Query:       CTQ29096.1  [L=601]
Description: putative oligopeptide transporter subunit; periplasmic-binding component of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-69  232.3   4.4    1.2e-68  231.9   4.4    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.9   4.4   6.4e-73   1.2e-68       2     371 ..      98     502 ..      97     507 .. 0.94

  Alignments for each domain:
  == domain 1  score: 231.9 bits;  conditional E-value: 6.4e-73
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTTTTTHCHHHHHHH CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnalfltllaavpasi 100
                 ++p +Ae++    +D    ++ L++ ++F+DGtp+tA Dv+f+f++++  + ++ + ++      +++v+a+ ++tvr+ l +p  +++  l  +p  +
  CTQ29096.1  98 YYPLIAERA-RYAEDYSWMEIALNPRARFHDGTPITARDVAFTFNKFMTEGVPQFRLFYK-----GTTVKAIAPLTVRIDLGQPGKENMLSLLSLPVMP 190
                 79******5.99********************************************9998.....8******************887666666666666 PP

                 GCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTST......TTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEESTTCCTHCHHHHHT CS
   SBP_bac_5 101 akkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYw......gggkpkldriefkvipdsdaraaalqsGeiddvaepppsdieqlkeak 193
                    a   +++ +++  ++p  +GPY++  +  gq+i++ r  dYw      ++g+ ++d +++ ++ d++++ +a+++G +d  +e  ++++++ ++  
  CTQ29096.1 191 E--AFWRQHKLSDPLSKPPLASGPYRISTWRMGQYIIYSRVADYWaadlpvNRGRWNFDTLRYDYYLDDNVAFEAFKAGAVDRREETVAKNWATRYVGR 287
                 6..46677888999*******************************88888777888******************************************* PP

                 TEEE.......EEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHH................ CS
   SBP_bac_5 194 glkv.......lyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpayka................ 269
                 +          + ++  + ++ lafN ++p+f+d rvRqA+++A+D+e+++ka+++  +++ans+++++ ++a   ++ a+ a                
  CTQ29096.1 288 NFSRgyiikdeHTNTSAQDTQWLAFNIQRPIFADRRVRQAITLAFDFEWMNKALFYSAYQRANSYFQNTEYAARSLPDAAELAlltpmkkelppelfsq 386
                 *************************************************************************9999998777**************** PP

                 ..............SHHHHHHHHHHHTT-BCSSTSCEETC.EEEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEE CS
   SBP_bac_5 270 ..............ydpekAkklLkeaGykdgdggglrek.klkltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmill 353
                                ++ kA +lL++aG++ ++++ ++++ +++l+++l      +++++  +q +l+++Gi +++++vd+ ++y +r++++d+dm+ +
  CTQ29096.1 387 vyqppvsrgdgfdrANLLKADALLNAAGWTVKNQRRVNAAtGKPLRFELLLPAGGNDRWVLPFQHNLQRLGIVMDIRQVDN-SQYSNRRRSRDYDMMPS 484
                 ***********88888****************99888777*9999999999999999************************.***************** PP

                 EEECTTSTTHHHHHHHHS CS
   SBP_bac_5 354 gwgadypdpdnflnpfls 371
                  w a ++++ +  +++ s
  CTQ29096.1 485 LWRAMPWPGTDLQISWAS 502
                 ****99888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4558.08
//
Query:       CTQ29097.1  [L=364]
Description: putative oligopeptide transporter subunit; permease component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-41  140.1  14.7    6.3e-41  140.1  14.7    1.7  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        1.3    9.7   2.7        3.3    8.3   0.3    2.6  2  Renin_r       Renin receptor-like protein


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.19   1.7e+03      26      40 ..       9      25 ..       4      62 .. 0.70
   2 !  140.1  14.7     7e-45   6.3e-41       2     183 ..     152     359 ..     151     361 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.19
  BPD_transp_1 26 vllslPsfv..laillv 40
                  +ll +P+++  + i ++
    CTQ29097.1  9 LLLVIPTLWaiITINFF 25
                  56778888843222222 PP

  == domain 2  score: 140.1 bits;  conditional E-value: 7e-45
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvf..........................vilsilghlilpviillllsaapyvrlir 72 
                   i+lGi  a++ ++++d ++++lii+++++P f++aill+++f                          +il++l+h  lpv+++++ ++a++++l+ 
    CTQ29097.1 152 IPLGIRKAVSNGSRFDIWSSTLIIIGYAIPAFLFAILLIVIFaggsyfdlfplrglvspnfdtlpwyqKILDYLWHITLPVLATVIGGFAALTMLTK 248
                   89*********************************************************************************************** PP

  BPD_transp_1  73 raalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggl.lggavlleflgswpGlgtllleailgydyseisnggvlalviavlll 168
                   +++l+++ k++v +ara+G++++qi++ +v++na+  +i+g++ +f+++ ++g++l+e ++s +Glg+l  ea+ ++dy+ +  g++++++++ lll
    CTQ29097.1 249 NSFLDEIRKQYVVTARAKGVGEKQILWGHVFRNAMLLVIAGFPATFISMfFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMF-GTLYIFTLIGLLL 344
                   *************************************************99********************************.************* PP

  BPD_transp_1 169 nlvadilqrlldprv 183
                   n+v+di ++l+dpr+
    CTQ29097.1 345 NIVSDISYTLVDPRI 359
                   **************8 PP

>> Renin_r  Renin receptor-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.16   1.4e+03      59      82 ..       9      32 ..       7      34 .. 0.85
   2 ?    8.3   0.3   0.00037       3.3      44      80 ..     320     356 ..     290     360 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.16
     Renin_r 59 LwlvvvlvlaliaivvalasmdPg 82
                L lv+  + a+i+i + ++++ Pg
  CTQ29097.1  9 LLLVIPTLWAIITINFFIVQIAPG 32
                5677777889999*******9998 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00037
     Renin_r  44 akkyssdYpaiFniiLwl.vvvlvlalia.ivvalasmd 80 
                 + ++s dYp++F  +  +  + l+l ++  i+++l+  d
  CTQ29097.1 320 EATVSRDYPVMFGTLYIFtLIGLLLNIVSdISYTLV--D 356
                 6789********865544144455554432666664..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2794.96
//
Query:       CTQ29098.1  [L=341]
Description: putative oligopeptide transporter subunit; permease component of ABC superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-29  100.5  15.2    1.8e-28   99.6  15.2    1.6  1  BPD_transp_1     Binding-protein-dependent transport system i
    3.8e-06   26.8   0.1    3.8e-06   26.8   0.1    4.0  5  OppC_N           N-terminal TM domain of oligopeptide transpo
  ------ inclusion threshold ------
       0.13   11.8   0.3       0.34   10.4   0.3    1.8  1  DUF4044          Protein of unknown function (DUF4044)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6  15.2     3e-32   1.8e-28       1     182 [.     158     338 ..     136     341 .] 0.90

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 3e-32
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g+l+G++ + ++++k+d + +++i+v++++P++ l+ill       s+++ ++++ ++i++l++++ +v ++r+++lr+++ d+v+aa alG+s++q
    CTQ29098.1 158 GVLAGAIQG-YYGGKIDLWGQRFIEVWSGMPTLFLIILLS------SVVQPGFWWlLAITVLFGWMTLVGVVRAEFLRTRNYDYVRAAQALGVSDRQ 247
                   677788888.******************************......****9999999**************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpG.....lgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                   i+ +++lPna+  ++t+l++ + ++++  + l flg + +     lg lll+  ++ + ++  ++++l +++++ ll+++  ++ +++dp 
    CTQ29098.1 248 IILRHMLPNAMVATLTFLPFILCSSITTLTSLDFLGFGLPlgspsLGELLLQGKNNLQAPWLGIAAFLSVAVLLTLLIFIGEAVRDAFDPS 338
                   ************************************3333444456666666666666666559999999999*************99997 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   6.4e-10   3.8e-06       4      44 ..       8      51 ..       5      65 .. 0.82
   2 ?   -4.4   1.1         3   1.8e+04      24      29 ..     148     153 ..     142     164 .. 0.50
   3 ?   -0.2   1.1      0.17     1e+03      23      36 ..     190     203 ..     188     241 .. 0.80
   4 ?   -2.3   0.1      0.74   4.4e+03      16      30 ..     257     271 ..     255     283 .. 0.71
   5 ?   -0.5   1.3      0.21   1.3e+03      16      29 ..     313     326 ..     312     335 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 6.4e-10
      OppC_N  4 qda.wrrFkrNklAvvglvilllllliaifaPliaPydp..qdl 44
                 +a w rF+ N++   +l+++l+l+l+++ a+l+++  p   ++
  CTQ29098.1  8 NQArWARFRHNRRGYWSLWLFLILFLCSLGAELLTNDRPllVQY 51
                56669*****************************7655566444 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 3
      OppC_N  24 llllli 29 
                 lll+l+
  CTQ29098.1 148 LLLTLF 153
                 333333 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.17
      OppC_N  23 lllllliaifaPli 36 
                 +l++ll ++++P +
  CTQ29098.1 190 FLIILLSSVVQPGF 203
                 67777778887766 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.74
      OppC_N  16 Avvglvillllllia 30 
                 A+v+   +l ++l++
  CTQ29098.1 257 AMVATLTFLPFILCS 271
                 788877777777765 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.21
      OppC_N  16 Avvglvilllllli 29 
                 A+++ ++ll+ll++
  CTQ29098.1 313 AFLSVAVLLTLLIF 326
                 78888888888875 PP

>> DUF4044  Protein of unknown function (DUF4044)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   5.7e-05      0.34      12      33 .]     140     161 ..     138     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.7e-05
     DUF4044  12 TkvvvwlMliaTVGSvllgala 33 
                 T++ v + l++T++S++lg+la
  CTQ29098.1 140 TRISVLFGLLLTLFSSVLGVLA 161
                 89999999************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2596.61
//
Query:       CTQ29099.1  [L=529]
Description: putative fused oligopeptide transporter subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-57  193.8   0.0    3.2e-29  102.2   0.0    2.2  2  ABC_tran         ABC transporter
    4.8e-12   46.3  12.9    8.2e-06   25.8   0.1    4.1  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    2.9e-10   40.5   0.0    0.00017   22.0   0.0    2.5  2  oligo_HPY        Oligopeptide/dipeptide transporter, C-termin
    1.3e-09   37.8   5.8    0.00026   20.5   0.3    3.7  2  SMC_N            RecF/RecN/SMC N terminal domain
    9.2e-09   35.7   1.9    0.00063   20.0   0.1    3.4  2  AAA_22           AAA domain
    3.9e-06   27.4   6.3      0.001   19.5   0.7    2.7  2  AAA_16           AAA ATPase domain
    6.8e-06   25.7   0.2      0.078   12.7   0.1    2.4  2  AAA_29           P-loop containing region of AAA domain
    0.00011   21.1   0.0     0.0077   14.9   0.0    2.1  2  AAA_13           AAA domain
    0.00026   20.6   0.7       0.25   10.9   0.1    3.1  3  AAA_25           AAA domain
    0.00032   20.9   0.1       0.23   11.7   0.0    3.6  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
     0.0023   17.5   0.1        1.3    8.5   0.0    2.4  2  AAA_7            P-loop containing dynein motor region
     0.0028   17.6   0.7        1.1    9.1   0.1    2.4  2  RsgA_GTPase      RsgA GTPase
     0.0051   16.2   0.2       0.64    9.4   0.0    2.7  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0058   16.6   0.8        6.9    6.7   0.0    3.2  3  AAA_5            AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.017   14.6   1.7        3.3    7.1   0.1    2.7  3  Pox_A32          Poxvirus A32 protein
       0.13   12.3   4.0        5.2    7.1   0.1    2.4  2  DUF87            Helicase HerA, central domain
       0.14   11.3   0.2         37    3.4   0.0    3.3  4  NB-ARC           NB-ARC domain
       0.17   11.6   1.6        7.3    6.3   0.0    3.3  4  Sigma54_activat  Sigma-54 interaction domain
        0.2   11.4   1.0         19    4.9   0.0    2.3  2  AAA_24           AAA domain
       0.25   11.5   1.7         14    5.8   0.3    3.0  2  AAA_33           AAA domain
       0.34   10.2   3.7        4.2    6.6   0.4    2.5  2  AIG1             AIG1 family
       0.49   10.3   4.7         12    5.8   0.0    3.7  3  NACHT            NACHT domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.0     3e-28   2.4e-25       2     136 ..      26     184 ..      25     185 .. 0.87
   2 !  102.2   0.0   3.9e-32   3.2e-29       2     137 .]     303     454 ..     302     454 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 3e-28
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH.......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx.......... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp.....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren.......... 79 
                 +n+sl++  ge++a+vGe+G+GKS  +  +++ll        +G+i++ g++l +    + + +  ++i++++qe   +l+p +t++++          
  CTQ29099.1  26 HNLSLEVAVGETLALVGESGSGKSISALSVLRLLPTppasyPSGDIRFHGQSLLHadeaTLRGVRGNRIAMIFQEpmVSLNPLHTLEKQlyevlslhrg 124
                 89**********************765555555444489999*************877666677789********99999****99999*********9 PP

                 ....HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                     +++ ei + l+++g+ + + +   + p++LSgG++qrv++a+all++p+ll++DEpt
  CTQ29099.1 125 mrkqAARGEILDCLERVGIRQAPRRL-ADYPHQLSGGERQRVMIAMALLTRPELLIADEPT 184
                 986666666***********966655.5899*****************************9 PP

  == domain 2  score: 102.2 bits;  conditional E-value: 3.9e-32
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH...............H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx...............x RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren...............e 80 
                 + +s++l++ge++++vGe+G+GKSt   +l++l  p  G+i++ g++++    ++l  lr++++v++q+  ++l+p+lt+++                e
  CTQ29099.1 303 NSLSFQLRAGETLGLVGESGSGKSTTGLALLRLI-PSGGKITFAGQPIQGrnrRQLLPLRRQMQVVFQDpnSSLNPRLTAQQIieeglrvhqptltaaE 400
                 789*****************************96.89*************766666778**********9999*****998889***********9888 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++ +  a++++gl+    ++    p+ +SgGq+qr+a+aral+ kp+l++lDEpt+
  CTQ29099.1 401 REQSVILAMQEVGLDPASRQRY---PAAFSGGQRQRIAIARALIVKPQLIVLDEPTS 454
                 8888999999999999666665...9*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.53   4.3e+02       3      13 ..      39      49 ..      38      82 .. 0.81
   2 !   20.4   0.4   4.6e-07   0.00038     234     302 ..     154     220 ..     127     221 .. 0.86
   3 ?    5.8   0.3     0.013        10       3      31 ..     316     341 ..     315     391 .. 0.75
   4 !   25.8   0.1     1e-08   8.2e-06     233     301 ..     422     488 ..     396     490 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.53
      AAA_21  3 vliGpNgsGKS 13
                +l+G  gsGKS
  CTQ29099.1 39 ALVGESGSGKS 49
                69********* PP

  == domain 2  score: 20.4 bits;  conditional E-value: 4.6e-07
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                 +++lS G ++   ++ all ++    ll+ DEp + L+ ++++ +l+ll+el++  +  +++ TH+ +++
  CTQ29099.1 154 PHQLSGGERQRVMIAMALLTRP---ELLIADEPTTALDVSVQAQILQLLRELKQeLNMGLLFITHNLSIV 220
                 6889999999966666666666...99**********************7777779**********9986 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.013
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdveg 31 
                 +l+G  gsGKS+   al  l   ++++  
  CTQ29099.1 316 GLVGESGSGKSTTGLALLRL---IPSGGK 341
                 69***************988...333333 PP

  == domain 4  score: 25.8 bits;  conditional E-value: 1e-08
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv..iltTHSpll 301
                  ++ +S G+++ +a++ al+  +    l+++DEp ++L+  +++ +l llk+l+r + Q+  i+ +H+  +
  CTQ29099.1 422 YPAAFSGGQRQRIAIARALIVKP---QLIVLDEPTSSLDKTVQAQILNLLKALQR-KHQLayIFISHDLGV 488
                 56678899999977777777766...9****************************.777777*****9876 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.1e-07   0.00017       1      29 [.     236     264 ..     236     277 .. 0.91
   2 !   16.0   0.0   1.6e-05     0.013       1      22 [.     505     526 ..     505     528 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.1e-07
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprld 29 
                 vE  ++++lf+ p+HPYT+ Ll+s p+ +
  CTQ29099.1 236 VEHNDCRALFSAPAHPYTQRLLDSEPDGE 264
                 8999********************99865 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.6e-05
   oligo_HPY   1 vErgpssklfdeplHPYTkaLl 22 
                 vE+g+++ +f+ p+H YT+ Ll
  CTQ29099.1 505 VEQGECKSVFSAPRHEYTRQLL 526
                 8*******************98 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.3   3.2e-07   0.00026      28     213 ..      39     231 ..      26     238 .. 0.71
   2 !   15.4   1.1   1.2e-05    0.0095     127     207 ..     409     494 ..     303     506 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.2e-07
                 EEEESTTSSHHHHHHHHHHHCTT.TTT....TTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLGersak....klrseklsdlihk.skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkk 121
                 a+vG+ GSGKs    ++l +L +  a+     +r +  ++l+h+ +++ + v   +++++f+++  +    ++  ++++++++  +  ++  +k++ + 
  CTQ29099.1  39 ALVGESGSGKSISALSVLRLLPTPPASypsgDIRFH-GQSLLHAdEATLRGVRGNRIAMIFQEPMVS---LNPLHTLEKQLYEVLS-LHRGMRKQAARG 132
                 567777777776666666666554332111134433.355666645556666777777777776665...3444445555544443.555567888899 PP

                 HHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEE CS
                 xxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklv 209
                 e+ + le++gi +          +LSgGe++ v++a+ +      +  l + De   aLD +  +++ +ll+e +++  + ++ i+++  ++++    v
  CTQ29099.1 133 EILDCLERVGIRQAprrladyphQLSGGERQRVMIAMAL----LTRPELLIADEPTTALDVSVQAQILQLLRELKQElnMGLLFITHNLSIVRQLADRV 227
                 9999*******999999999999*******988888764....344458899********************88876448899*****99999987777 PP

                 EEEE CS
                 xxxx RF
       SMC_N 210 gvtk 213
                  v++
  CTQ29099.1 228 AVMQ 231
                 7776 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.2e-05
                 HHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSE..EEEE-SSHHHCCC-SC CS
                 xxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
       SMC_N 127 lesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQ..fivislreemlekadk 207
                 ++++g+++        ++SgG+++ +a+a  +    vkp+ l +lDe  + LD++  +++ +llk+ + + Q  +i is++ ++++   +
  CTQ29099.1 409 MQEVGLDPAsrqrypaAFSGGQRQRIAIARALI---VKPQ-LIVLDEPTSSLDKTVQAQILNLLKALQRKHQlaYIFISHDLGVVRALCH 494
                 333444333666666699*****9999886543...5555.89**********************8888877335888888777776544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.3   0.00017      0.14       8      42 ..      38      78 ..      34     223 .. 0.63
   2 !   20.0   0.1   7.7e-07   0.00063      10     128 ..     317     482 ..     311     492 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00017
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee......erpev 42
                l+++GesG+GK+ ++  +l+ l+  ++         ++ ++
  CTQ29099.1 38 LALVGESGSGKSISALSVLRLLPTPPASYPsgdirfHGQSL 78
                789****************9997544333365555544444 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 7.7e-07
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee.................erpevvfvtlpsstsskdllrellralglelka..................... 70 
                 ++GesG+GK+t+   ll+  +   k++                  ++ +vvf +++ss +++  ++++ ++  + +                       
  CTQ29099.1 317 LVGESGSGKSTTGLALLRLIPSGGKITFagqpiqgrnrrqllplrRQMQVVFQDPNSSLNPRLTAQQIIEEGLRVHQPtltaaereqsvilamqevgld 415
                 79*******************9999999********999999996666666666666669999999888775554444688888888888888888886 PP

      AAA_22  71 ..erlsseellealeqalrarav.....ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                   +r++  + ++  +++  a a+     ++l+++DE    l+   ++++l+ L+ l+   +++++ i++
  CTQ29099.1 416 paSRQRYPAAFSGGQRQRIAIARalivkPQLIVLDEPTSsLDktvQAQILNLLKALQR--KHQLAYIFI 482
                 654444444443333333333337899**********999998666************..999999998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.5   0.00083      0.68      22      51 ..      35      62 ..      15     213 .. 0.64
   2 !   19.5   0.7   1.2e-06     0.001      19     167 ..     309     477 ..     284     482 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00083
      AAA_16 22 grpelvllsGesGvGKsslvrellralekd 51
                g  e + l+GesG+GKs  + ++lr l + 
  CTQ29099.1 35 G--ETLALVGESGSGKSISALSVLRLLPTP 62
                4..6799***********999999877666 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.2e-06
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesa...ipy..sa.laqalareellrqlldeaesaeleawrekleeala.avpe 110
                 +r+g  e + l+GesG+GKs+   +llr +   g i+++g+  q +     +p+  ++ ++ +  +++           + +  +++ +ee l+  +p 
  CTQ29099.1 309 LRAG--ETLGLVGESGSGKSTTGLALLRLIPSGGKITFAGQPIQGRNRrqlLPLrrQMqVVFQDPNSS----------LNPRLTAQQIIEEGLRvHQPT 395
                 3444..67889****************87776664555555555422211222222222222222333..........334444444444444453444 PP

      AAA_16 111 lagaea.srllellkrll.allsrder......................plvlvlDdlqwadeaslql.laaLlrllesk.pl 167
                 l++ae+ +++  ++++   + +sr +r                      p ++vlD+     + + q+ + +Ll++l++k +l
  CTQ29099.1 396 LTAAEReQSVILAMQEVGlDPASR-QRypaafsggqrqriaiaralivkPQLIVLDEPTSSLDKTVQAqILNLLKALQRKhQL 477
                 444444444444444444333333.3334444444444444444455558999999999777777777799999998886455 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00046      0.37      15      36 ..      28      49 ..      23      64 .. 0.81
   2 !   12.7   0.1   9.6e-05     0.078      16      38 ..     306     328 ..     293     344 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00046
      AAA_29 15 htieidlkgatlltGpsGsGKS 36
                 ++e+ + ++  l+G+sGsGKS
  CTQ29099.1 28 LSLEVAVGETLALVGESGSGKS 49
                556777777899*********9 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 9.6e-05
      AAA_29  16 tieidlkgatlltGpsGsGKSTl 38 
                 +++++  ++  l+G+sGsGKST 
  CTQ29099.1 306 SFQLRAGETLGLVGESGSGKSTT 328
                 45555444667**********95 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.022        18     529     581 ..     177     227 ..     167     244 .. 0.86
   2 !   14.9   0.0   9.4e-06    0.0077     524     572 ..     441     487 ..     433     502 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.022
      AAA_13 529 ivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkknt 581
                   + D P   LD  ++  +  l+++   ++ ++  lfi THnl+  +++ +++
  CTQ29099.1 177 LLIADEPTTALDVSVQAQILQLLRELK-QELNMGLLFI-THNLSIVRQLADRV 227
                 678899*******************97.7888888887.*********99875 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 9.4e-06
      AAA_13 524 igkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnle 572
                 i k + +v+D P SSLD++++  + +l+k+   +k++ + +fi+ H l 
  CTQ29099.1 441 IVKPQLIVLDEPTSSLDKTVQAQILNLLKALQ-RKHQLAYIFIS-HDLG 487
                 558999*************************7.8999*****97.6655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0053       4.3      32      53 ..      34      55 ..       4      58 .. 0.81
   2 ?   -3.3   0.0       7.1   5.8e+03     126     186 ..     191     213 ..     148     215 .. 0.62
   3 !   10.9   0.1   0.00031      0.25      30     188 ..     309     484 ..     276     485 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0053
      AAA_25 32 agelallaGapgtGKttlaldl 53
                 ge+ +l+G +g+GK+  al++
  CTQ29099.1 34 VGETLALVGESGSGKSISALSV 55
                58999*************9986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.1
      AAA_25 126 ltadvdaleaaieevegvrlvviDplsralggdensnsdvgalvealeriarrtgaavllv 186
                 ++                                      +++++ l++++++++  +l++
  CTQ29099.1 191 VQ--------------------------------------AQILQLLRELKQELNMGLLFI 213
                 33......................................444455555555555554444 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00031
      AAA_25  30 lpagelallaGapgtGKttlaldlalavatGkpwlg.........pvap..eqgkVlyvsaEdsedelrrRlravg...eal.......rddarllvld 107
                 l+age+  l+G +g+GK+t  l l   + +G + +          + +     ++ + v++ d+++ l++Rl a+    e l       +         
  CTQ29099.1 309 LRAGETLGLVGESGSGKSTTGLALLRLIPSGGKITFagqpiqgrnR-RQllPLRRQMQVVFQDPNSSLNPRLTAQQiieEGLrvhqptlT--------- 397
                 46899999****************9988855444444565544741.2233445667788888999999999975544333344444441......... PP

      AAA_25 108 lagv.eslpLfakd.....rggtlltadvdaleaaieeveg.....vrlvviDplsralggdensnsdvgalvealeriarrtgaavllvhH 188
                 +a++ +s+ L++++     +  ++ +a++   +++  ++++     ++l+v+D  ++ l+   +     +++++ l+ ++r+++ a +++ H
  CTQ29099.1 398 AAEReQSVILAMQEvgldpASRQRYPAAFSGGQRQRIAIARalivkPQLIVLDEPTSSLDKTVQ-----AQILNLLKALQRKHQLAYIFISH 484
                 3333334433332222111111112333333222222222222223777777766665554444.....66666666666666666666666 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.063        51      32      88 ..     156     199 ..     138     201 .. 0.62
   2 !   11.7   0.0   0.00028      0.23      63      89 ..     443     469 ..     415     470 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.063
     SbcCD_C  32 tlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                 +lSGGe+q ++ +a+a  l           ++++l++ DE    lD   +a++l+ll
  CTQ29099.1 156 QLSGGERQRVM-IAMA--L----------LTRPELLIADEPTTALDVSVQAQILQLL 199
                 67888875433.2222..1..........1245666666666666666666666666 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00028
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                 +++l++LDE  s+lD++ +a++l+ll+
  CTQ29099.1 443 KPQLIVLDEPTSSLDKTVQAQILNLLK 469
                 589*********************997 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0016       1.3      24      58 ..      26      60 ..      17      79 .. 0.76
   2 !    6.2   0.0    0.0081       6.6      17      55 ..     296     334 ..     289     344 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0016
       AAA_7 24 yllelllknkkpvllvGptGtGKtviikdllkkld 58
                + l+l ++ +  + lvG++G+GK++ + ++l+ l+
  CTQ29099.1 26 HNLSLEVAVGETLALVGESGSGKSISALSVLRLLP 60
                55666778889999*************99999887 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0081
       AAA_7  17 vdtvrysyllelllknkkpvllvGptGtGKtviikdllk 55 
                 vd  r+   l+  l+++  + lvG++G+GK+++   ll+
  CTQ29099.1 296 VDHHRVVNSLSFQLRAGETLGLVGESGSGKSTTGLALLR 334
                 566677777778889999999**********99777766 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1    0.0093       7.5      86     113 ..      21      49 ..       9      59 .. 0.76
   2 !    9.1   0.1    0.0014       1.1      86     114 ..     298     327 ..     290     338 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0093
                  THTTHHHHHHHCTT.SEEEEECSTTSSHH CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKS 113
                  t++ +++l+ +++  +t +lvG+SG GKS
   CTQ29099.1  21 TQTVVHNLSLEVAVgETLALVGESGSGKS 49 
                  45556666665555599***********9 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0014
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHH CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKSt 114
                  +++ +++l+ +l+  +t  lvG+SG GKSt
   CTQ29099.1 298 HHRVVNSLSFQLRAgETLGLVGESGSGKST 327
                  4567889999999889*************9 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00078      0.64      15      48 ..      28      61 ..      17      66 .. 0.82
   2 ?    3.7   0.0     0.043        35       5      48 ..     295     338 ..     292     344 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00078
  Mg_chelatase 15 leiaaaGgHnlllvGppGsGKtmlakrlpsllpp 48
                  l + +a g  l lvG +GsGK++ a  +  llp 
    CTQ29099.1 28 LSLEVAVGETLALVGESGSGKSISALSVLRLLPT 61
                  55666667899*********************96 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.043
  Mg_chelatase   5 vkGqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpp 48 
                   v+ +++  + l      g  l lvG +GsGK+    +l  l+p+
    CTQ29099.1 295 VVDHHRVVNSLSFQLRAGETLGLVGESGSGKSTTGLALLRLIPS 338
                   6666666666677666777899***********99999999885 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0085       6.9       3      26 ..      39      62 ..      37      68 .. 0.85
   2 !    6.6   0.1    0.0086         7       4      24 ..     317     339 ..     314     365 .. 0.85
   3 ?   -1.0   0.0         2   1.6e+03      64      90 ..     436     469 ..     375     475 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0085
                EEE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5  3 lLvGppGtgKselaerlaaalnre 26
                 LvG++G+gKs  a +++++l ++
  CTQ29099.1 39 ALVGESGSGKSISALSVLRLLPTP 62
                69*************999999554 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0086
                 EE--SSSSHHHHHHHGGGGB..S CS
       AAA_5   4 LvGppGtgKselaerlaaal..n 24 
                 LvG++G+gKs+    l++++  +
  CTQ29099.1 317 LVGESGSGKSTTGLALLRLIpsG 339
                 9***********99999998542 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2
                 -......G-SEEEEESGGG--.HHHHHHHHHHHH CS
       AAA_5  64 r......egeilvlDEverae.sevlnsLlslle 90 
                        +++++vlDE +    + v++  l+ll 
  CTQ29099.1 436 IaralivKPQLIVLDEPTSSLdKTVQAQILNLLK 469
                 0334447888899999776665777777777775 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1     0.004       3.3      16      36 ..      38      58 ..      32      61 .. 0.89
   2 ?    5.7   0.1     0.011       9.1      16      40 ..     315     339 ..     307     354 .. 0.81
   3 ?   -2.2   0.0       2.8   2.3e+03      30      49 ..     464     483 ..     451     495 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.004
     Pox_A32 16 lalvGgsGsGktvyLlsLlrt 36
                lalvG+sGsGk +  ls+lr 
  CTQ29099.1 38 LALVGESGSGKSISALSVLRL 58
                89***********99999985 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.011
     Pox_A32  16 lalvGgsGsGktvyLlsLlrtlvkk 40 
                 l lvG+sGsGk +  l+Llr + ++
  CTQ29099.1 315 LGLVGESGSGKSTTGLALLRLIPSG 339
                 779**********999999977655 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.8
     Pox_A32  30 LlsLlrtlvkkykhifLltp 49 
                 +l+Ll+ l +k++  +++++
  CTQ29099.1 464 ILNLLKALQRKHQLAYIFIS 483
                 56677777777766666554 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0064       5.2      16      43 ..      28      55 ..      18      62 .. 0.82
   2 ?    5.2   1.3     0.025        20      26      46 ..     315     335 ..     311     343 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0064
       DUF87 16 ldlnklvtrHlAilgsTGsGKSntvavL 43
                l l+ +v + lA +g++GsGKS  + + 
  CTQ29099.1 28 LSLEVAVGETLALVGESGSGKSISALSV 55
                6777899999************887655 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.025
       DUF87  26 lAilgsTGsGKSntvavLlee 46 
                 l+ +g++GsGKS+t   Ll+ 
  CTQ29099.1 315 LGLVGESGSGKSTTGLALLRL 335
                 6889**********8888775 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.046        37       7      41 ..      23      56 ..      17      68 .. 0.76
   2 ?   -0.2   0.0      0.58   4.7e+02      93     174 ..     164     251 ..     144     260 .. 0.70
   3 ?    3.0   0.1     0.059        48       8      35 ..     301     327 ..     296     333 .. 0.75
   4 ?   -2.2   0.0       2.2   1.8e+03      95     111 ..     435     451 ..     404     495 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.046
                HHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHC CS
      NB-ARC  7 kviekLlekdelqslvvalvGmgGvGKttlakqil 41
                 v ++L+ +  ++   +alvG  G+GK++ a ++l
  CTQ29099.1 23 TVVHNLSLEVAVG-ETLALVGESGSGKSISALSVL 56
                5666677666666.689***********9777766 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.58
                 HHHHHHHCCCTTEEEEEE......EE-SHHHH.....HHHHCHTTSEEEEEESBCCCCCCS-S-.EEEEEESS--HHHHHHHHHHCCTS CS
      NB-ARC  93 krklvrlLltkrfllvlD......DVweeedwdkigvvlparenrlrvllTTRdeevanavsat.sekievelLekdeawellenkvfe 174
                   ++  +Llt+  ll+ D      DV  + +  ++   l+ +e  +  l+ T + ++  + +++   + + ++ e++++  l+++ + +
  CTQ29099.1 164 RVMIAMALLTRPELLIADepttalDVSVQAQILQLLRELK-QELNMGLLFITHNLSIVRQLADRvAVMQNGRCVEHNDCRALFSAPAHP 251
                 4566777777777777663333334433333224444555.777788899999999999999997777778999999999999987655 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.059
                 HHHHHHCTTTSCSEEEEEEESTTSSHHH CS
      NB-ARC   8 viekLlekdelqslvvalvGmgGvGKtt 35 
                 v + L+ +   +   ++lvG  G+GK+t
  CTQ29099.1 301 VVNSLSFQLRAG-ETLGLVGESGSGKST 327
                 556666444444.6899**********9 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.2
                 HHHHHCCCTTEEEEEEE CS
      NB-ARC  95 klvrlLltkrfllvlDD 111
                  + r+L+ k  l+vlD 
  CTQ29099.1 435 AIARALIVKPQLIVLDE 451
                 67888888888888885 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.009       7.3       5      42 ..      18      55 ..      14      68 .. 0.82
   2 ?   -3.5   0.1       8.7   7.1e+03     104     119 ..     186     201 ..     179     205 .. 0.81
   3 ?    1.7   0.0      0.22   1.8e+02      23      39 ..     313     329 ..     294     342 .. 0.76
   4 ?   -0.1   0.0      0.83   6.8e+02      77     119 ..     425     470 ..     422     476 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.009
                     SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat  5 sealkelleqikkvaktdlsvlitGesGtGKellarai 42
                     + ++++++++++  ++   ++ ++GesG+GK++ a ++
       CTQ29099.1 18 QGETQTVVHNLSLEVAVGETLALVGESGSGKSISALSV 55
                     5667788888888888889999**********998665 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8.7
                      GS-HHHHHHHHHHHHH CS
  Sigma54_activat 104 elplelQekLlrvlqe 119
                       l++++Q+++l++l e
       CTQ29099.1 186 ALDVSVQAQILQLLRE 201
                      6889999999999976 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.22
                      S-EEEECSTTSSHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKella 39 
                       ++ ++GesG+GK++  
       CTQ29099.1 313 ETLGLVGESGSGKSTTG 329
                      556689*******9865 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.83
                      SSTTTSS-BE..HHHHHTTTSEEEEET.GGGS-HHHHHHHHHHHHH CS
  Sigma54_activat  77 aFtGAekekk..GlfekadgGtlfLDe.igelplelQekLlrvlqe 119
                      aF+G ++++    +    +   + LDe  ++l+ ++Q+++l++l+ 
       CTQ29099.1 425 AFSGGQRQRIaiARALIVKPQLIVLDEpTSSLDKTVQAQILNLLKA 470
                      677777777622333345667889999557899*****99988864 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.023        19       5      22 ..      38      55 ..      35      64 .. 0.83
   2 ?    4.6   0.4     0.028        23       5      21 ..     315     331 ..     311     343 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.023
      AAA_24  5 iliyGpsgiGKTtlakel 22
                ++++G+sg+GK+ +a++ 
  CTQ29099.1 38 LALVGESGSGKSISALSV 55
                789*********999876 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.028
      AAA_24   5 iliyGpsgiGKTtlake 21 
                 + ++G+sg+GK+t+ + 
  CTQ29099.1 315 LGLVGESGSGKSTTGLA 331
                 6799*********9765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.058        47       4      24 ..      40      60 ..      38     208 .. 0.87
   2 ?    5.8   0.3     0.018        14       4      39 ..     317     366 ..     315     486 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.058
      AAA_33  4 lvGlpGsGKstlaerllkklg 24
                lvG +GsGKs  a ++l+ l+
  CTQ29099.1 40 LVGESGSGKSISALSVLRLLP 60
                79********99988887665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.018
      AAA_33   4 lvGlpGsGKstlaerllkklg....avllssdt..........lrrrlfg 39 
                 lvG +GsGKst    ll+  +     ++  +++          lrr++ +
  CTQ29099.1 317 LVGESGSGKSTTGLALLRLIPsggkITFAGQPIqgrnrrqllpLRRQMQV 366
                 69*********988887655555666666666666666666665555555 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2     0.032        26       2      22 ..      37      57 ..      36      59 .. 0.88
   2 ?    6.6   0.4    0.0051       4.2       3      21 ..     315     333 ..     313     336 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.032
                EEEEESSTTSSHHHHHHHHHT CS
        AIG1  2 tivlvGktgnGkSaTgNsilg 22
                t+ lvG +g+GkS  + s+l+
  CTQ29099.1 37 TLALVGESGSGKSISALSVLR 57
                788**********99988885 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0051
                 EEEESSTTSSHHHHHHHHH CS
        AIG1   3 ivlvGktgnGkSaTgNsil 21 
                 + lvG +g+GkS+Tg ++l
  CTQ29099.1 315 LGLVGESGSGKSTTGLALL 333
                 669***********98877 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.015        12       2      21 ..      37      56 ..      36      63 .. 0.82
   2 ?   -1.4   0.1       2.4   1.9e+03      72     132 ..     165     220 ..     142     231 .. 0.62
   3 ?    3.0   1.1       0.1        83       3      15 ..     315     327 ..     313     484 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.015
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +++l Ge+GsGK++ + ++ 
  CTQ29099.1 37 TLALVGESGSGKSISALSVL 56
                789**********9776665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.4
                 CHHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCH CS
       NACHT  72 vwavllelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpral 132
                 v++ ++ l +  Lli   +De  t l+ + ++++ +lL+el ++  l    l++t   + +
  CTQ29099.1 165 VMIAMALLTRPELLI---ADEPTTALDVSVQAQILQLLRELKQE--LNMGLLFITHNLSIV 220
                 555555555555566...35555555555557777777777666..555555555555554 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.1
                 EEEEC-TTTCHHH CS
       NACHT   3 vilqGeaGsGKTt 15 
                 + l Ge+GsGK+t
  CTQ29099.1 315 LGLVGESGSGKST 327
                 5688999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.39
# Mc/sec: 4024.34
//
Query:       CTQ29100.1  [L=114]
Description: hypothetical protein CH1034_250228 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-50  167.7   0.0    8.9e-50  167.6   0.0    1.0  1  YejG             YejG-like protein
  ------ inclusion threshold ------
      0.084   13.5   0.0       0.13   12.9   0.0    1.3  1  Transglycosylas  Transglycosylase-like domain


Domain annotation for each model (and alignments):
>> YejG  YejG-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   0.0   9.9e-54   8.9e-50       2     105 ..       5     108 ..       4     109 .. 0.99

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 9.9e-54
        YejG   2 qlsvvhrLPqsyrwlsgftgvkveplpeeeaseensliglkLlshdgesawevlrelkqsladiqvesaivelegePCLflereDesaalCrlknlGva 100
                 qls+vhrLPqsyrwl+gf+g++vep+p++ a++ensl++lkLls dge+aw v+++l+q+l+di+v+++++e+egePCLf++ +De aa+Crlkn+Gva
  CTQ29100.1   5 QLSIVHRLPQSYRWLAGFAGSRVEPIPQNGAQNENSLVALKLLSPDGEKAWPVMHKLSQALSDIEVDCSVLECEGEPCLFVNLQDEFAATCRLKNFGVA 103
                 9************************************************************************************************** PP

        YejG 101 iaesi 105
                 iae++
  CTQ29100.1 104 IAEPF 108
                 ***98 PP

>> Transglycosylas  Transglycosylase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.4e-05      0.13      39      76 ..      20      57 ..      13      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.4e-05
                     HHTTCCST.SCGGGS-HHHHHHHHHHHHHHHCGGGSTT CS
  Transglycosylas 39 eavggekyapsaaqAsreqQiavAekvlatqGagaWpt 76
                     + ++g++ +p +++ ++++   vA k+l+ +G +aWp+
       CTQ29100.1 20 AGFAGSRVEPIPQNGAQNENSLVALKLLSPDGEKAWPV 57
                     45899999*****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 883.10
//
Query:       CTQ29101.1  [L=398]
Description: bicyclomycin/multidrug efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-47  162.2  96.6    6.9e-45  153.5  53.6    2.0  2  MFS_1           Major Facilitator Superfamily
    1.2e-12   47.5  12.7    1.2e-12   47.5  12.7    2.1  2  Sugar_tr        Sugar (and other) transporter
    3.9e-06   25.9   1.2    3.9e-06   25.9   1.2    2.3  2  Folate_carrier  Reduced folate carrier
    4.4e-06   26.2  37.0    6.6e-06   25.6  37.0    1.3  1  MFS_4           Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
       0.39    9.8  32.9      0.054   12.6  12.0    3.4  3  EIIC-GAT        PTS system sugar-specific permease component


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.5  53.6   1.9e-48   6.9e-45       2     353 .]      16     359 ..      15     359 .. 0.85
   2 !   22.5  35.0   1.3e-08   4.8e-05       3     175 ..     220     393 ..     218     397 .. 0.88

  Alignments for each domain:
  == domain 1  score: 153.5 bits;  conditional E-value: 1.9e-48
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                  l+a+l+ l++++++palp  +a ++++   ++++ l++y lg+a+++l++G+++d +Gr++v+l g l+fa++++++++ s+   +l+v+r++ Gl+a
  CTQ29101.1  16 GLLAMLMPLSIDMYLPALP-VIAAQYNVPDGSAQMTLSTYILGFALGQLLYGPMADSLGRKPVILGGTLVFAAAAVACAL-SQTVdMLIVMRFFHGLAA 112
                 5889***************.9*****************************************************777776.88888************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 +a+  +++al++d++pk+e +r+++++++ + ++++++p++gg+++ +++W+a+f+ila+v+lla ++++l+++e+ p+++r++   +      + l +
  CTQ29101.1 113 AAASVVINALMRDIYPKDEFSRMMSFVMLVTTIAPLVAPMVGGAVLVWFSWHAIFWILALVALLASLMIGLFIRETLPAERRQPFHLR------TTLGN 205
                 *******************************************************************999999999999999865444......55555 PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                  +  l++++ ++++++a+ + f+g++++l+  p+      + +     g+++al  ++ + + ++ +r+++r+g+ r+   +l + +++a+ ++++a+ 
  CTQ29101.1 206 -FATLFRHKRVLSYMLASGFSFAGMFSFLSAGPFVYININHVA-PQHFGYYFALNIVFLFLMTMFNSRFVRRVGALRMFRAGLWIQFAMAVWMVVCALL 302
                 .555666665554555555555688888888888546666666.45566666666666666777********999777777777777777777777777 PP

       MFS_1 298 ssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntags.lggalgp 353
                 +  +++l++ v + + ++++v++ ++a++ d +p ++agtas+l++t++  +g+++g+
  CTQ29101.1 303 DVGFWSLVIGVAAFVgCVSMVSSNAMAVILDEFP-HMAGTASSLAGTFRFgIGAIIGA 359
                 8889999977776677999999999999999997.***********888779999985 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 1.3e-08
       MFS_1   3 laaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa....sslw.lllvlrvlq 95 
                 la  +s+++++ +++a p  ++ +  +++p+ +g  ++l  ++ ++++++ +r++ r+G+ r++ +gl + ++++++++++     ++w l++ + ++ 
  CTQ29101.1 220 LASGFSFAGMFSFLSAGPFvYI-NINHVAPQHFGYYFALNIVFLFLMTMFNSRFVRRVGALRMFRAGLWIQFAMAVWMVVCalldVGFWsLVIGVAAFV 317
                 7788999999999999999555.7779***********************************************666663246799***8888888888 PP

       MFS_1  96 Glgagalfpagaaliadwfpkeergraigllsag.fslGailgpllggllasslgWravfyilaivsllafvlfllllpee 175
                 G   +++ ++++a+i d fp+   g a +l++++ f++Gai+g+ll+ +        ++++i  ++++ + ++f l+  ++
  CTQ29101.1 318 GCV-SMVSSNAMAVILDEFPH-MAGTASSLAGTFrFGIGAIIGALLSMATF---TTAWPMLISIAFCATCSIFFSLYASRR 393
                 887.9****************.***********769*******99999888...78899***********99988877655 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5  12.7   3.3e-16   1.2e-12      49     194 ..      48     188 ..      37     194 .. 0.94
   2 ?    1.4  27.5     0.031   1.1e+02     251     433 ..     210     387 ..     190     391 .. 0.82

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 3.3e-16
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlai 147
                  +++s +++G ++G+l+ g+++d +GRk+++l ++++f ++av +a+++   +v +liv+R++ G+++ +asv++  ++  i pk+  ++++s+  l +
  CTQ29101.1  48 QMTLSTYILGFALGQLLYGPMADSLGRKPVILGGTLVFAAAAVACALSQ---TVDMLIVMRFFHGLAAAAASVVINALMRDIYPKDEFSRMMSFVMLVT 143
                 57899********************************************...9********************************************** PP

                 HHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS--- CS
    Sugar_tr 148 tfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPES 194
                 t+  lva ++g ++    +   w+  +++ ++ all ++++ lf++E+
  CTQ29101.1 144 TIAPLVAPMVGGAVLVWFS---WHAIFWILALVALLASLMIgLFIRET 188
                 *****************99...******99999987655444999998 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.031
                 ...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS. CS
    Sugar_tr 251 vrqrlligvvlqifqqltGinaimyysptifenlglsks...llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaksk 346
                  r + ++  +l+++  + G+++++  +p ++ n+    +    +  ++ +v  f++t++   +v+r+G  +++  G+ ++++++v +  v++ll  +  
  CTQ29101.1 210 FRHKRVLSYMLASGFSFAGMFSFLSAGPFVYININHVAPqhfGYYFALNIVFLFLMTMFNSRFVRRVGALRMFRAGLWIQFAMAVWMV-VCALLDVG-- 305
                 5667789999999***************9999998887756633334444556777888888899999989****************6.66666666.. PP

                 ..CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHH CS
    Sugar_tr 347 aasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifv 433
                      +++++a f+ + ++     ++v++ E+  +++ ++a+++a +  + +  +i+ l  ++t +   +++ +  a++a  +i+f 
  CTQ29101.1 306 --FWSLVIGVAAFVGCVSMVSSNAMAVILDEF--PHMAGTASSLAGTFRFGIGAIIGALLSMATFTTA-WPMLISIAFCATCSIFFS 387
                 ..4566778889999**************998..5788*************************99999.999999999999999985 PP

>> Folate_carrier  Reduced folate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   1.2   1.1e-09   3.9e-06      65     191 ..      69     199 ..      51     214 .. 0.85
   2 ?   -5.4   6.0       3.4   1.2e+04     308     386 ..     239     319 ..     219     350 .. 0.65

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.1e-09
  Folate_carrier  65 tdylrYkpvivlqalalivvwllllftksllalqvlevfYgvat.aaevaYysyiYslvdkekYqrvtsytRsavlvgkfvs.svlaQllvslak 157
                     +d l  kpvi+  +l + +  +   + +++ +l+v+ +f+g+a  aa v+  + +    +k ++ r+ s++  ++ ++ +v+  v + +lv +++
      CTQ29101.1  69 ADSLGRKPVILGGTLVFAAAAVACALSQTVDMLIVMRFFHGLAAaAASVVINALMRDIYPKDEFSRMMSFVMLVTTIAPLVApMVGGAVLVWFSW 163
                     688999***********************************9861568999999999999***********999988888772566789999*99 PP

  Folate_carrier 158 vsys.tlnyis.lasvvvalllslfLprpkkslffk 191
                       ++  l  ++ las++++l++   Lp  +++ f  
      CTQ29101.1 164 HAIFwILALVAlLASLMIGLFIRETLPAERRQPFHL 199
                     987725566663688999999999999999887765 PP

  == domain 2  score: -5.4 bits;  conditional E-value: 3.4
  Folate_carrier 308 vkvnwerwgelvlavlsvlqagllllmavtesiwvayaayv.lfkalyqllitia.vfqiAanlseelyalvFgintfval 386
                     v +n + ++    +  ++l+   l+lm++ +s +v  ++ + +f+a   +   +a +  + a l+   ++lv g+ +fv+ 
      CTQ29101.1 239 VYININHVAPQHFGYYFALNIVFLFLMTMFNSRFVRRVGALrMFRAGLWIQFAMAvWMVVCALLDVGFWSLVIGVAAFVGC 319
                     445555566666666677777777777776666665554432566543333333313445566777777777777777765 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6  37.0   1.9e-09   6.6e-06      11     359 ..      28     388 ..      19     392 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.9e-09
       MFS_4  11 sytpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlah 109
                 +y p LP++ a+ ++  + a +  +   lG+ +G ll    + +   + ++l+g+l+ +++++a+al + + +++++Rf  G+a+A++ v++ +l+   
  CTQ29101.1  28 MYLPALPVIAAQYNVPDGSAQMTLSTYILGFALGQLLYGPMADSLGRKPVILGGTLVFAAAAVACALSQTVDMLIVMRFFHGLAAAAASVVINALMRDI 126
                 589*********************************99777777666777********************************************99888 PP

       MFS_4 110 aaaarrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaaeaakaeqkslplla..lllaYgla.Gf 205
                   + + +r+++++     +  +v+  +v  ++ +  s++++ ++la++++++ l++ l ++++ ++e  ++++ ++++ + + l++   +l Y la Gf
  CTQ29101.1 127 YPKDEFSRMMSFVMLVTTIAPLVA-PMVGGAVLVWFSWHAIFWILALVALLASLMIGLFIRETLPAERRQPFHLRTTLGNFATLFRhkRVLSYMLAsGF 224
                 888888888888776555554444.45556666667777788899****************99999********999988877765115899*99769* PP

       MFS_4 206 GYiitatFlvaiardg.aggalleallWllvGlaaivgvlvw...lrvakrsglrralaaallie.avgv...llsllspsplglivssvllGltflai 296
                  +  +  Fl+a         +++ +++   + l ++   l++    r  +r g+ r+++a l+i+ a++v   + +ll  +  +l++++  + +   ++
  CTQ29101.1 225 SFAGMFSFLSAGPFVYiNINHVAPQHFGYYFALNIVFLFLMTmfnSRFVRRVGALRMFRAGLWIQfAMAVwmvVCALLDVGFWSLVIGVAAFVGCVSMV 323
                 *********98544443667888889888888888755444311156778999**********996444411144556678889999999999999999 PP

       MFS_4 297 talvlqlarelappatrrllglm.TasfgigQilGpllasllaeat.gslalallvaaaalvlaa 359
                  + +++++    p+   ++ +l+ T  fgig i+G+ll  + + ++   l +  ++a  ++++++
  CTQ29101.1 324 SSNAMAVILDEFPHMAGTASSLAgTFRFGIGAIIGALLSMATFTTAwPMLISIAFCATCSIFFSL 388
                 9999************88888765999*********99766555540445555558888888776 PP

>> EIIC-GAT  PTS system sugar-specific permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.2   0.00023      0.82     126     197 ..      81     154 ..      75     157 .. 0.81
   2 ?   -4.1   8.1       1.7   6.2e+03      95     144 ..     137     181 ..     135     210 .. 0.74
   3 ?   12.6  12.0   1.5e-05     0.054      86     196 ..     255     361 ..     199     369 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00023
    EIIC-GAT 126 qalvlavvlyvlgf.gnvalviigslllglywlvlpaltqkftrkitgndgva.lghqqtlgyalaalvgklfg 197
                 ++lv+a+  +++ + ++v ++i++ +++gl  + ++ +++  +r+i+ +d+++ +  + +l  ++a lv++++g
  CTQ29101.1  81 GTLVFAAAAVACALsQTVDMLIVMRFFHGLAAAAASVVINALMRDIYPKDEFSrMMSFVMLVTTIAPLVAPMVG 154
                 444555444344442779***********************************899999999999999998886 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.7
    EIIC-GAT  95 llglivniilarfkktttlky.ifltghvmlqqalvlavvlyvlgfgnval 144
                  + ++v  i  ++ ++    + ++ ++h +++  +++a +       ++++
  CTQ29101.1 137 SFVMLVTTIAPLVAPMVGGAVlVWFSWHAIFWILALVALL------ASLMI 181
                 55555555555555555556679**********9999998......33333 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 1.5e-05
    EIIC-GAT  86 lgsevalilllglivniilarfkktttlky.ifltghvmlqqalvlavvlyvlgfgnvalviigslllglywlvlpaltqkftrkitgndgvalghqqt 183
                 ++ ++ +++l+ ++      r+   + +++ +++ + +++++ + +     +l +g + lvi ++ ++g++ +v++++++ + +++  ++g+a    +t
  CTQ29101.1 255 FALNIVFLFLMTMFNSRFVRRVGALRMFRAgLWIQFAMAVWMVVCA-----LLDVGFWSLVIGVAAFVGCVSMVSSNAMAVILDEFPHMAGTASSLAGT 348
                 3333333444444444444444444444445555444444443333.....333599****************************************** PP

    EIIC-GAT 184 lgyalaalvgklf 196
                 + + ++a++g l+
  CTQ29101.1 349 FRFGIGAIIGALL 361
                 **********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1127  (0.0628591); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.41
# Mc/sec: 2879.47
//
Query:       CTQ29102.1  [L=239]
Description: 16S rRNA pseudouridylate 516 synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-18   66.0   0.0    1.4e-17   64.2   0.0    1.8  1  PseudoU_synth_2  RNA pseudouridylate synthase
    7.3e-11   41.6   0.1    1.4e-10   40.7   0.1    1.5  1  S4               S4 domain


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   1.6e-21   1.4e-17       2     160 .]      62     192 ..      61     192 .. 0.89

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 1.6e-21
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      ++++nKP+g++++ ++       ++ t+ +  +e+   +l++ +RLD +t+Gl+l++++++++++ +   ++++++K+Yl+ ++   + +eg+ 
       CTQ29102.1  62 YFMLNKPQGYVCSTDD------PDHPTILYFLDEPVAHKLHAAGRLDIDTTGLVLMTDDGQWSHRITS--PRHHCEKTYLVALE--SPLAEGTA 145
                      889*************......**********************************************..*************5..44444444 PP

  PseudoU_synth_2  96 kkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhlaa 160
                      +             + k  +l+++k  t+   l+        + ++v+l++ +Gr hQ+++++aa
       CTQ29102.1 146 E------------LFAKGVQLHNEKDLTKPALLEVI------TPTEVRLTISEGRYHQVKRMFAA 192
                      4............34445777888888888888888......888******************96 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.1   1.5e-14   1.4e-10       1      48 []       1      47 [.       1      47 [. 0.93

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.5e-14
                EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4  1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48
                +RLdk++a+++ +s r  A + I++ rV+V+G +vkd+s++++p+ ++
  CTQ29102.1  1 MRLDKFIAQQLGVS-RAIAGREIRGSRVTVDGDIVKDASFKLQPEHEV 47
                8*******777776.****************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1940.85
//
Query:       CTQ29103.1  [L=585]
Description: putative nucleic acid ATP-dependent helicase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-23   82.3   0.0    6.4e-23   81.6   0.0    1.4  1  ResIII         Type III restriction enzyme, res subunit
    3.2e-14   53.2   0.0    8.9e-14   51.8   0.0    1.8  2  Helicase_C     Helicase conserved C-terminal domain
    1.9e-09   37.5   0.1    7.4e-08   32.4   0.0    2.5  2  DEAD           DEAD/DEAH box helicase
    3.7e-07   30.1   0.0    7.6e-07   29.0   0.0    1.5  2  SWI2_SNF2      SWI2/SNF2 ATPase
      5e-05   23.1   0.1    0.00013   21.8   0.0    1.7  2  AAA_30         AAA domain
    0.00026   21.0   7.3     0.0019   18.2   2.3    2.4  2  UPF0547        Uncharacterised protein family UPF0547
     0.0027   17.7   5.0       0.02   14.9   1.6    2.5  2  DZR            Double zinc ribbon
      0.009   15.6   3.2      0.031   13.9   0.3    2.3  2  zf-tcix        Putative treble-clef, zinc-finger, Zn-binding
  ------ inclusion threshold ------
      0.044   14.0   0.2       0.14   12.4   0.2    1.8  1  AAA_22         AAA domain
      0.056   12.7   0.0      0.085   12.1   0.0    1.2  1  DUF2075        Uncharacterized conserved protein (DUF2075)
       0.19   11.5  12.3       0.69    9.7   0.2    2.9  3  zinc_ribbon_2  zinc-ribbon domain
       0.22   11.0   9.6        3.5    7.2   4.1    3.0  3  zf-ribbon_3    zinc-ribbon domain


Domain annotation for each model (and alignments):
>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   4.3e-26   6.4e-23       2     170 ..       3     154 ..       2     155 .. 0.88

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 4.3e-26
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.... CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekd 100
                 ++lr+yQ+ea++++l+ +  ++ + + i+++TG+GK+lv+a+l++  +      ++l+l++ k+l+ q   ++  +  ea+     +  g ++k+    
  CTQ29103.1   3 FTLRPYQQEAVDATLAWFR-RHTEPAAIVLPTGAGKSLVIAELARLARG-----RVLVLAHVKELVAQNHAKYCALGLEAD----IFAAGLQRKE---- 87 
                 789************9998.9999*******************999998.....9*********************99974....5666666666.... PP

                 ...-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...TTTHHH....HHT---SEEEEEESS-S CS
      ResIII 101 stnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..kswrei....lekfkeavllglTATpe 170
                  ++ k+++ ++qs+ +++        ++ r++f ++i+DE+Hr++++  +++++i     + +++  llglTATp 
  CTQ29103.1  88 -SHGKVVFGSVQSVARNL--------DQFRSEFSLLIVDECHRISDDddSQYQQIighlRQVNPQIRLLGLTATPF 154
                 .89***************........9999****************9555****95553333355999*******7 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.4   8.1e+03      13      51 ..      46      84 ..      38     116 .. 0.50
   2 !   51.8   0.0     6e-17   8.9e-14       5     109 ..     241     343 ..     237     345 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.4
                TTTTSEEEEEESSHHHHHH..HHHHHHHTTSTEEEESTTST CS
  Helicase_C 13 eeeggkilifvntidrlek..vklllekkgikvavlhgelp 51
                +  +g++l+ ++ ++ + +  +k+     g+++ ++ + l+
  CTQ29103.1 46 RLARGRVLVLAHVKELVAQnhAKYC--ALGLEADIFAAGLQ 84
                5566677776666664433344444..33344433333333 PP

  == domain 2  score: 51.8 bits;  conditional E-value: 6e-17
                 HHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHH CS
  Helicase_C   5 allellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiq 102
                 ++ +++++ e+++ ++if+ t++++ + + ll      ++a ++ge+p  er++i+e+f+++ +++L+   v+ +G d p v+l+ ++ + ++v+ y+q
  CTQ29103.1 241 IVSQIVEFAENRKGVMIFAATVEHAREvTGLL---PVGQAALITGETPGPERDRIIEAFKAQAYRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQ 336
                 5556668889*************997644555...46799*********************************************************** PP

                 HHTTSSS CS
  Helicase_C 103 riGRtgR 109
                  +GR  R
  CTQ29103.1 337 IVGRGLR 343
                 ****988 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   4.9e-11   7.4e-08       2     169 ..       7     153 ..       6     157 .. 0.78
   2 ?    2.2   0.0     0.088   1.3e+02     119     170 ..     214     263 ..     189     269 .. 0.66

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 4.9e-11
                 HHHHHHHHHHH.....TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH CS
                 xxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil.....gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld 95 
                 ++Q+ea++++l     + +   +  +TG+GK+l+  i+ l+++       + ++l+++  +eL+ q + ++  ++ ++d     +  g ++++      
  CTQ29103.1   7 PYQQEAVDATLawfrrHTEPAAIVLPTGAGKSLV--IAELARL------ARGRVLVLAHVKELVAQNHAKYCALGLEAD----IFAAGLQRKES----- 88 
                 7899999999988877778999***********9..4444444......567*************98888877777655....33334333333..... PP

                 TTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  96 ngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATl 169
                  + ++v+g  + +++ l++ +   s++++l++DE++r++d+    ++++i+ +l+q +     q +++ l+AT+
  CTQ29103.1  89 -HGKVVFGSVQSVARNLDQFR---SEFSLLIVDECHRISDD-DDSQYQQIIGHLRQVNP----QIRLLGLTATP 153
                 .45669999999999886555...99**************9.89999999999976655....556*******8 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.088
                 CTTEEEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 119 lsqvrflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 l+  +   + Ead   +  ++++   +i++q+ +  ++ k    v+++ AT++
  CTQ29103.1 214 LQAQSNGLFSEADLNHELkKQQRITPHIVSQIVEFAENRK---GVMIFAATVE 263
                 5555666677888777775678888899999954444333...4*******97 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   5.1e-10   7.6e-07       1     159 [.       8     155 ..       8     168 .. 0.80
   2 ?   -3.7   0.0         5   7.5e+03      79      98 ..     220     238 ..     207     262 .. 0.49

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 5.1e-10
   SWI2_SNF2   1 qQyravekavervkegdrkgGviWHtqGSGKsltmvflakklleeelknpkvvvvtDRkdLdkQlsktfakageekpkqaesrkeLkellekesekiif 99 
                 +Q  av ++++  +++++ + ++   +G+GKsl  + la+  +       +v+v+   k+L  Q ++++ ++g e+       + L+++   +++k++f
  CTQ29103.1   8 YQQEAVDATLAWFRRHTEPAAIV-LPTGAGKSLVIAELARLARG------RVLVLAHVKELVAQNHAKYCALGLEAD---IFAAGLQRKE--SHGKVVF 94 
                 57788888888888875555555.567******99999887777......9*******************9998874...3334566554..589**** PP

   SWI2_SNF2 100 ttiqKfeeeekeklevlsereniivlvDEaHR......sqygelakklrkalpnaafigFTGTPil 159
                   +q  +++    l++++++   +++vDE+HR      sqy+++  +lr++ p+  ++g+T TP  
  CTQ29103.1  95 GSVQSVARN----LDQFRSEF-SLLIVDECHRisddddSQYQQIIGHLRQVNPQIRLLGLTATPFR 155
                 ******764....44444444.799*******6666666888**********************75 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5
   SWI2_SNF2  79 qaesrkeLkellekesekii 98 
                    s+++L+++l+k +++i 
  CTQ29103.1 220 GLFSEADLNHELKK-QQRIT 238
                 44455566666633.22222 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   8.7e-08   0.00013       2     123 ..       5     148 ..       4     151 .. 0.82
   2 ?   -3.3   0.0       4.3   6.4e+03     118     168 ..     473     521 ..     458     522 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 8.7e-08
      AAA_30   2 lnaeQaaaveallt...sgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkv.Lae..elgieastiakllkrlk............. 81 
                 l++ Q++av+a+l+    +   a+++ p G+GK+ ++++l+++++   grv++lA+ ++  ++  a+  +lg+ea+  a  l+r +             
  CTQ29103.1   5 LRPYQQEAVDATLAwfrRHTEPAAIVLPTGAGKSLVIAELARLAR---GRVLVLAHVKELVAQnHAKycALGLEADIFAAGLQRKEshgkvvfgsvqsv 100
                 6667788877776521133345788999**************999...7999999987765551554558889*********99999************ PP

      AAA_30  82 ..grarlepg.tllivDEagmv...dtkqlaallkaaekagakvilvG 123
                   +  +++++ +llivDE   +   d +q ++++ ++++ + +++l+G
  CTQ29103.1 101 arNLDQFRSEfSLLIVDECHRIsddDDSQYQQIIGHLRQVNPQIRLLG 148
                 *9667899999********99977788899999999999999999998 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.3
      AAA_30 118 kvilvGDerQlasVeaGgvlrdlveaagigtaeLtevvRqkeseeraaala 168
                  +++ G   Q++  e+G +l+      + + a ++e +R + +++r+a ++
  CTQ29103.1 473 VLRCSGMALQHGGDEKGPWLKIT--YYDEDGADVSERFRLQTPAQRTAFEQ 521
                 45566666777777777788777..45677888888888888888888776 PP

>> UPF0547  Uncharacterised protein family UPF0547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2     0.016        24      15      22 ..     382     389 ..     377     390 .. 0.87
   2 !   18.2   2.3   1.3e-06    0.0019       1      20 [.     432     451 ..     432     454 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.016
     UPF0547  15 qfCphCGy 22 
                 +fCp CG+
  CTQ29103.1 382 VFCPACGF 389
                 59*****9 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1.3e-06
     UPF0547   1 KvCPeCeakvPvaaqfCphC 20 
                 K+CP+C a+  +aa++C++C
  CTQ29103.1 432 KNCPQCNAENDIAARRCREC 451
                 9******************* PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.056        84      12      19 ..     381     388 ..     369     413 .. 0.77
   2 !   14.9   1.6   1.4e-05      0.02       1      22 [.     434     455 ..     415     477 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.056
         DZR  12 arfCseCg 19 
                 + fC++Cg
  CTQ29103.1 381 QVFCPACG 388
                 34444444 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.4e-05
         DZR   1 CpqCgeelppdarfCseCgtkl 22 
                 CpqC++e++  ar C eC t l
  CTQ29103.1 434 CPQCNAENDIAARRCRECDTIL 455
                 9999999999999999998876 PP

>> zf-tcix  Putative treble-clef, zinc-finger, Zn-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.13   1.9e+02      13      20 ..     384     391 ..     383     396 .. 0.89
   2 !   13.9   0.3   2.1e-05     0.031      10      36 ..     431     455 ..     428     460 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.13
     zf-tcix  13 CpkCGtyN 20 
                 Cp CG  N
  CTQ29103.1 384 CPACGFAN 391
                 *****988 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.1e-05
     zf-tcix  10 vrkCpkCGtyNGtRglsCkNkaCdqvf 36 
                  + Cp+C ++N +++++C+  +Cd+++
  CTQ29103.1 431 FKNCPQCNAENDIAARRCR--ECDTIL 455
                 699***************8..677765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   9.5e-05      0.14      10     111 ..      29     132 ..      21     151 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.5e-05
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee.....erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav....ielliiDE 99 
                 ++ ++G+GK++++++l++ +       +     + +e+v  + ++ +    l  +++ a  ++   ++   + ++  ++  +r+ +      +lli+DE
  CTQ29103.1  29 IVLPTGAGKSLVIAELARLARG-----RvlvlaHVKELVAQNHAKYC-ALGLEADIFAAGLQR---KESHGKVVFGSVQSVARNLDQfrseFSLLIVDE 118
                 56699**************832.....12222233333333333333.333322222222222...233555555666666666666666888****** PP

      AAA_22 100 aqhlrs...eealee 111
                  +++ s   + ++++
  CTQ29103.1 119 CHRI-SdddDSQYQQ 132
                 ***9.5334444444 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   5.7e-05     0.085      10     109 ..      33     131 ..      32     141 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.7e-05
     DUF2075  10 aGtGKtvvllnllael..eddeeertavylsvNhplvlvlrealakke.....ekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrll 101
                 +G+GK++v  +l+  +  +   + + + ++ +Nh+   +l  + +  +     ++++ k +f  ++s+  nl+        + + ++ ++ivDE hr+ 
  CTQ29103.1  33 TGAGKSLVIAELARLArgRVLVLAHVKELVAQNHAKYCALGLEADIFAaglqrKESHGKVVFGSVQSVARNLD--------QFRSEFSLLIVDECHRIS 123
                 59********999888554455777777777777776654333322222244444777777888888888888........8899************** PP

     DUF2075 102 tksdqaek 109
                 +  d++ +
  CTQ29103.1 124 DDDDSQYQ 131
                 *6666443 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.3   3.4e+03      10      16 ..      64      70 ..      64      71 .. 0.84
   2 ?    9.7   0.2   0.00046      0.69       9      21 ..     377     389 ..     375     391 .. 0.83
   3 ?    6.2   4.4    0.0058       8.7       2      19 ..     434     451 ..     433     451 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.3
  zinc_ribbon_2 10 qdnakFC 16
                   q+ ak+C
     CTQ29103.1 64 QNHAKYC 70
                   6899*** PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00046
  zinc_ribbon_2   9 lqdnakFCpyCGt 21 
                    + + ++FCp CG+
     CTQ29103.1 377 NVPVQVFCPACGF 389
                    667899******7 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0058
  zinc_ribbon_2   2 CpnCGaelqdnakFCpyC 19 
                    Cp+C ae++  a+ C +C
     CTQ29103.1 434 CPQCNAENDIAARRCREC 451
                    ***************999 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2    0.0083        12      17      23 ..     382     388 ..     379     390 .. 0.66
   2 ?    7.2   4.1    0.0024       3.5       3      22 ..     432     451 ..     430     455 .. 0.91
   3 ?    3.8   0.1     0.026        39       3      17 ..     446     461 ..     444     462 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0083
  zf-ribbon_3  17 nvCpyCG 23 
                  ++Cp CG
   CTQ29103.1 382 VFCPACG 388
                  5666666 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0024
  zf-ribbon_3   3 vrCPnCGa.plssddnvCpyC 22 
                  ++CP+C+a + +  ++ C  C
   CTQ29103.1 432 KNCPQCNAeN-DIAARRCREC 451
                  79********.*******999 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.026
  zf-ribbon_3   3 vrCPnCGa.plssddn 17 
                  +rC +C++ ++++dd+
   CTQ29103.1 446 RRCRECDTiLVDPDDM 461
                  79******88****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4129.93
//
Query:       CTQ29104.1  [L=94]
Description: 50S ribosomal subunit protein L25 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-24   85.0   0.1    4.3e-24   84.8   0.1    1.0  1  Ribosomal_L25p  Ribosomal L25p family


Domain annotation for each model (and alignments):
>> Ribosomal_L25p  Ribosomal L25p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.1   2.4e-28   4.3e-24       1      81 []       4      91 ..       4      91 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 2.4e-28
                    EEEEECTS.SCCCHHHHHHTTEEEEEEEESSSCEEEEEEEHHHHHHHCH.....CSEEEEEETT..CEEEEEEEEEETTTTCEEEEEE CS
  Ribosomal_L25p  1 LkaekRte.gkgaarrlRregkvPavlyGggkepisisvdakelrkllkt....stlieLevdg..ekvllkdvqrhpvkdkilHvDF 81
                    ++ae+R+e gkga+rrlR+++k Pa++yGg  +p++i++d++++ ++  +    s+++++ vdg  ekv +++vqrh++k k++H+DF
      CTQ29104.1  4 INAEVRKEqGKGASRRLRAANKFPAIIYGGAAAPVAIELDHDKVWNMQDKaefySEVLTVVVDGkeEKVKVQAVQRHAFKPKLTHIDF 91
                    69****988***************************************889************8888********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 776.67
//
Query:       CTQ29105.1  [L=295]
Description: putative LysR-family transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-13   49.9   0.9    6.6e-13   48.4   0.9    1.8  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    4.3e-07   29.5   0.9      8e-07   28.6   0.9    1.5  1  LysR_substrate  LysR substrate binding domain
  ------ inclusion threshold ------
      0.087   12.6   0.1       0.74    9.7   0.0    2.4  2  HTH_23          Homeodomain-like domain


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.9   1.1e-16   6.6e-13       2      60 .]       9      67 ..       8      67 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.1e-16
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                 q+++f ++ae+gs+++AA +L     ++ + +  LE++lg +Lf R gr+l+LT++Ge
  CTQ29105.1  9 AQIEAFATIAETGSLSQAAIRLAKDRTTLRDLLDYLEDALGYRLFSREGRSLTLTAEGE 67
                699*******************************************************7 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.9   1.3e-10     8e-07      34     163 ..     122     247 ..      91     288 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1.3e-10
                     TEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGG..SSSECGGGGCTSEEEEESTTSTHHHHHHHHHH CS
  LysR_substrate  34 evelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLar..gepvsledLadeplilleegsglrdlledalr 124
                     +++l+  +++  e +++l +g + +ai+  +     s++e+r L++  l  +a+++  L++   +p++l  L   p +++  + +  d++ + l 
      CTQ29105.1 122 QIRLSCWSASRREAEQALSDGVAEMAICQANNrtLGSEMEWRALGTVDLRFYAADS--LFHdaPRPLTLLNLSLTPQLVM--HRRSDDQIARRL- 211
                     5667777788899******************999**********************..7774677777777777777772..233444444333. PP

                     CTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCC CS
  LysR_substrate 125 eaglkprvalevnsleallalvaaGlGiallprsavrde 163
                       +++ + +l +n++  l+++ ++G G+++lp+++   e
      CTQ29105.1 212 --QISGH-TLYMNEITLLRHALEQGRGWGFLPDHLRPGE 247
                     ..44444.5999**********************97653 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.28   1.7e+03      19      38 ..      22      41 ..      15      47 .. 0.80
   2 ?    9.7   0.0   0.00012      0.74      17      35 ..     201     219 ..     193     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.28
      HTH_23 19 svreIAreLgvsrrTvyrwl 38
                s +++A +L   r T++  l
  CTQ29105.1 22 SLSQAAIRLAKDRTTLRDLL 41
                66788888888888888765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00012
      HTH_23  17 GlsvreIAreLgvsrrTvy 35 
                 + s  +IAr+L +s +T+y
  CTQ29105.1 201 RRSDDQIARRLQISGHTLY 219
                 56999************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2540.21
//
Query:       CTQ29106.1  [L=428]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-38  130.4   3.4    1.3e-37  129.8   3.4    1.2  1  Beta-lactamase  Beta-lactamase


Domain annotation for each model (and alignments):
>> Beta-lactamase  Beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.8   3.4   7.2e-42   1.3e-37      19     320 ..     111     411 ..      96     419 .. 0.87

  Alignments for each domain:
  == domain 1  score: 129.8 bits;  conditional E-value: 7.2e-42
                     EEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSS.CTTSBGGGTSTTCTTGGGTTEBHHHHHTTHSSCSSSSTS CS
  Beta-lactamase  19 vavvrdgkvvldkggGvadleggrpvtadtlfriaSvtKtftaaavlqlveeGkl.dLddpVskylPefagpgkgkiTlrdLltHtsGlpdlfas 112
                     ++v++dgkv ++  +           t  tl+   Sv K++++++v   +++Gk+ +Ldd ++ y Pe++g +++++Tl++L++HtsG+ +++++
      CTQ29106.1 111 MLVLKDGKVAWKYLAE--------GNTDTTLWTSRSVGKSVVSTLVGIAIQQGKIhSLDDLITVYEPELKGTAWDGVTLKQLIQHTSGVEWNEDY 197
                     4799******998887........9*********************99999999658***********************************999 PP

                     TTCTSHHHTH..........HHHHHHHHHSBSSSSTTSCEE-SHHHHHHHHHHHHHHHTSHHHHHHHHHTTTTTTSTTEESSTTGGGGGGBEEEE CS
  Beta-lactamase 113 dlleeaaada..........aellralatlppkyapGtkwgYsntgygllgellekvtgrsleqllreeilrpLgmkdtelgppesgdprdaagy 197
                      ++++  a+           a +++ +  l+ +++ G++w+Ys  g++llg +le++tg+sl+  l++ +++p gm + +++ +  + + d  ++
      CTQ29106.1 198 TDPQSHFARLtqceaqpgayACVRKIVTGLARQHPAGEQWSYSSGGAWLLGDILERATGMSLAAWLEQALWQPAGMAHDGVWHAYQQGKHDVGAH 292
                     9999999999**********8888888888888888*********************************************************** PP

                     EEETCEEECSCETTHHHHCTTTBEEEEHHHHHHHH.......HHHHHCCSSSSHHHHHHHHHHHTSEEEECTTEEEECECSSEEEEECCH..... CS
  Beta-lactamase 198 tgngpearappanlpaeaegagglistardlarfl.......glalegglllsaetlaqltaklssgttrpagiraglglGwvladktga..... 280
                                           g  +t++d +rf+       +l ++++l+++++ +++++  +  + ++ a     +g+ w+ +  + +     
      CTQ29106.1 293 ----------------------GFNATLEDWGRFGefvardgRLSNGKQLVPTGWFDQAASWTKALNSVSAAHPEGIYGYQWWNNAIPANaqnvq 365
                     ......................99***********5555555555555555555555555555555555555555555999999988888***** PP

                     .......TEEEEEEESTEEEEEEEECGGTEEEEEEESBCSSHHHHHH CS
  Beta-lactamase 281 .......pgtfghtGggygtyvfvdpeanlvvavltnrdppnedaae 320
                            +g+++  G  yg++++v++++ lv++ +++  + +++  +
      CTQ29106.1 366 ptpqeglKGSLWALG-IYGQVIMVNRAEHLVIVQWSTWPQAEPSFNA 411
                     ***************.*****************99999987666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3169.95
//
Query:       CTQ29107.1  [L=198]
Description: putative NUDIX hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-05   25.1   0.1    2.1e-05   24.6   0.1    1.3  1  NUDIX          NUDIX domain
  ------ inclusion threshold ------
      0.092   12.5   0.8       0.23   11.3   0.8    1.7  1  RNA_pol_inhib  RNA polymerase inhibitor


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   2.3e-09   2.1e-05       3     109 ..      48     162 ..      46     182 .. 0.64

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.3e-09
                 EEEEEEEEEETTSE.EEEEEES....SSSTTT...EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEC CS
       NUDIX   3 rravgvvllnekge.vLlvrrs....kkpfpg...WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleeve 93 
                 + ++ ++l+n++++ v+l+r++     ++ ++    e  +G ++ + +pe+  + E+eEEtG+++  +e +    ++++++g+    +e ly+f +e +
  CTQ29107.1  48 GNGAVILLYNREKRtVVLTRQFrfpvFTHGHDgylIEAAAGLLD-NASPEARIVAEAEEETGFRVTRVEPVF---TVFMSPGS---VTEKLYFFIAEYQ 139
                 5678899*****999*****9987763333334533799***99.88**999***********775555554...33333333...4555555554444 PP

                 SGCSST......STTTEEEE.EE CS
       NUDIX  94 gelepn......denevsev.rw 109
                  + + +      +e+e  ev +w
  CTQ29107.1 140 ADDRRGdggglaAEGEDIEVlEW 162
                 44333334566744443333255 PP

>> RNA_pol_inhib  RNA polymerase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.8   2.6e-05      0.23      25      46 ..      96     116 ..      93     117 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.6e-05
  RNA_pol_inhib  25 eAlelAeeeYeeaGfeVtRvRP 46 
                    eA  +Ae+e ee Gf VtRv P
     CTQ29107.1  96 EARIVAEAE-EETGFRVTRVEP 116
                    788999995.99********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1611.65
//
Query:       CTQ29108.1  [L=253]
Description: Transcriptional regulator, DeoR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-42  145.7   0.7    1.4e-42  145.4   0.7    1.1  1  DeoRC           DeoR C terminal sensor domain
    1.4e-15   56.8   0.2    2.4e-15   56.0   0.2    1.3  1  HTH_DeoR        DeoR-like helix-turn-helix domain
    1.3e-08   34.7   0.2    2.5e-08   33.7   0.2    1.6  1  HTH_11          HTH domain
    5.8e-06   25.9   2.3      1e-05   25.0   0.5    2.3  2  GntR            Bacterial regulatory proteins, gntR family
    0.00082   19.4   0.1     0.0015   18.6   0.1    1.3  1  HTH_Mga         M protein trans-acting positive regulator (MG
     0.0074   16.3   0.7      0.019   14.9   0.2    2.0  2  Put_DNA-bind_N  Putative DNA-binding protein N-terminus
     0.0097   16.0   0.1       0.02   15.0   0.1    1.4  1  FeoC            FeoC like transcriptional regulator
  ------ inclusion threshold ------
      0.012   16.1   0.1       0.02   15.5   0.1    1.3  1  Mga             Mga helix-turn-helix domain
      0.016   15.3   0.1      0.041   13.9   0.1    1.7  1  HTH_20          Helix-turn-helix domain
      0.047   13.3   0.1      0.072   12.7   0.1    1.2  1  DDRGK           DDRGK domain
      0.055   13.9   0.0       0.11   12.9   0.0    1.5  1  FaeA            FaeA-like protein
       0.12   12.8   0.4       0.28   11.5   0.1    1.7  2  Rrf2            Transcriptional regulator
       0.16   12.2   0.0        0.3   11.3   0.0    1.4  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4   0.7     1e-45   1.4e-42       3     159 ..      74     230 ..      72     231 .. 0.99

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 1e-45
       DeoRC   3 aeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflgan 101
                 ++ K+++A+aAa+li++g+++++d+GtTt++++  L+++ ++tvvT+s  +a +L ++++i+villGG+v k+s  +vg+ ++  ++++n+d++f+g++
  CTQ29108.1  74 IASKQAVARAAAALIQPGQVVIVDGGTTTAAMIGFLPADLSCTVVTHSPGIAVALVDHPRIEVILLGGRVFKHSVVAVGAETLAGMARINADLFFMGVT 172
                 689************************************************************************************************ PP

       DeoRC 102 gidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitD 159
                 g+++++g+tt d+eea +kral ++a++++++a  +K++  + + i++l+  ++li+D
  CTQ29108.1 173 GVHPRAGFTTGDYEEAGIKRALTARAAETVVMASREKLNAASAFAIGELSLASTLIVD 230
                 ********************************************************99 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.2   1.7e-18   2.4e-15       1      52 [.       6      57 ..       6      61 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 1.7e-18
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGav 52
                R +qil+ l ++  +   el+++++vSe  iRRDL+eL+++g+l R+hGGa 
  CTQ29108.1  6 RKQQILQILTEEKQVMSGELSQRFNVSEDSIRRDLRELAAEGKLQRVHGGAL 57
                99************************************************95 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.2   1.8e-11   2.5e-08       1      44 [.       6      50 ..       6      72 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.8e-11
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg..v 44
                R++qil++L  +++++ + eL++++nvS+  +rrd+++L + g   
  CTQ29108.1  6 RKQQILQIL-TEEKQVMSGELSQRFNVSEDSIRRDLRELAAEGklQ 50
                899******.66667************************9999551 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.5   7.6e-09     1e-05      11      61 ..       8      56 ..       3      59 .. 0.85
   2 ?   -0.8   0.1      0.87   1.2e+03      37      62 ..      76     101 ..      61     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 7.6e-09
                HHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCE CS
        GntR 11 edIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrG 61
                ++Il+  l+ + +     eL+++f+Vs  ++R+ Lr+L+aeg ++r +g++
  CTQ29108.1  8 QQILQ-ILTEEKQV-MSGELSQRFNVSEDSIRRDLRELAAEGKLQRVHGGA 56
                66666.55666666.689******************************986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.87
                 -HHHHHHHHHHHHHTTSEEEETTCEE CS
        GntR  37 srttvReALrrLeaeglverrqgrGt 62 
                 s++ v +A   L + g v++ +g+ t
  CTQ29108.1  76 SKQAVARAAAALIQPGQVVIVDGGTT 101
                 66778889999999999998888765 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.1e-06    0.0015       5      45 ..       5      44 ..       3      46 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.1e-06
     HTH_Mga  5 krklkLlelLteneksltldelakeLglseltlqsdiseLn 45
                +rk+++l +Lte ek     el+ + + se +++ d++eL 
  CTQ29108.1  5 QRKQQILQILTE-EKQVMSGELSQRFNVSEDSIRRDLRELA 44
                8***********.9998889*******************95 PP

>> Put_DNA-bind_N  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   1.4e-05     0.019      20      48 ..      14      40 ..       8      40 .. 0.84
   2 ?   -3.3   0.0       7.1   9.8e+03      29      41 ..     152     164 ..     147     165 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-05
                    HHHTT--EE-HHHHHHHCTS-HHHHHHHH CS
  Put_DNA-bind_N 20 lkeegveriSSteLaealgvtaaqvRKDL 48
                    l e  ++ + S eL+++ +v++  +R+DL
      CTQ29108.1 14 LTE--EKQVMSGELSQRFNVSEDSIRRDL 40
                    554..479********************9 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.1
                     -HHHHHHHCTS-H CS
  Put_DNA-bind_N  29 SSteLaealgvta 41 
                      +++La ++ ++a
      CTQ29108.1 152 GAETLAGMARINA 164
                     5788999988886 PP

>> FeoC  FeoC like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.4e-05      0.02       4      48 ..       9      53 ..       8      60 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.4e-05
        FeoC  4 elkeyleergrvslkeLsrhfkaspealeamLeqwvrkGrvekva 48
                ++ + l e+++v  +eLs++f++s++ ++  L  + + G++++v 
  CTQ29108.1  9 QILQILTEEKQVMSGELSQRFNVSEDSIRRDLRELAAEGKLQRVH 53
                6778999**********************************9986 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.1   1.4e-05      0.02      14      54 ..       3      43 ..       1      46 [. 0.91

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
                HHSHHHHHHHHHHHHSEEEHHHHHHHCT--HHHHHHHHHHH CS
         Mga 14 keslkyqllkflfeeeevsieelaqelyiSestlkrkikel 54
                +++ k q+l+ l ee++v   el+q++ +Se ++ r+++el
  CTQ29108.1  3 ASQRKQQILQILTEEKQVMSGELSQRFNVSEDSIRRDLREL 43
                5677889*******************************998 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1     3e-05     0.041      13      50 ..       8      45 ..       2      54 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3e-05
                HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHH CS
      HTH_20 13 rrilraLaraegltaselaerldlskntlsyHLrvLee 50
                  il+ L++++ +  +el +r+ +s  ++++ Lr+L+ 
  CTQ29108.1  8 QQILQILTEEKQVMSGELSQRFNVSEDSIRRDLRELAA 45
                67**********************************86 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   5.3e-05     0.072     100     144 ..       6      50 ..       2      53 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.3e-05
                 HHHHHHHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS- CS
       DDRGK 100 lleefinyikekKvvlleelavkfklktqevierikeLeeqgslt 144
                   +++++ + e+K v   el+ +f+++ + ++  ++eL ++g+l+
  CTQ29108.1   6 RKQQILQILTEEKQVMSGELSQRFNVSEDSIRRDLRELAAEGKLQ 50 
                 568999************************************997 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.9e-05      0.11       1      48 [.       6      52 ..       6      56 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.9e-05
                -HHHHHHHHHH.S----HHHHHHHHTS-HHHHHHHHHHHHHHSSEEEE CS
        FaeA  1 mkeeIleylnsikapckTreiAdalglsaYQaRyYLeqLekegkikrs 48
                +k++Il+ l++ +  +   e+ + + +s   +R  L  L +egk++r+
  CTQ29108.1  6 RKQQILQILTE-EKQVMSGELSQRFNVSEDSIRRDLRELAAEGKLQRV 52
                5899*******.***********************************8 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00021      0.28      21      60 ..      15      54 ..       8      56 .. 0.85
   2 ?   -3.1   0.0       7.5     1e+04      30      46 ..      73      84 ..      67      98 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00021
                STCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
        Rrf2 21 eeeepvsseeiaerqnispsylekilakLrkaglvksvrG 60
                 ee++v s e+++r+n+s+  +++ l++L+ +g ++ v G
  CTQ29108.1 15 TEEKQVMSGELSQRFNVSEDSIRRDLRELAAEGKLQRVHG 54
                4555699**************************9888877 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7.5
                HHHHHHTS-HHHHHHHH CS
        Rrf2 30 eiaerqnispsylekil 46
                +ia++q +     ++  
  CTQ29108.1 73 QIASKQAV-----ARAA 84
                44444444.....3444 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00022       0.3      12      53 ..       9      50 ..       8      57 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
                    HHHHHHHHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 12 tIYtlseekkvvktkdlaerLnvspssVsemlkkLekdGyve 53
                    +I+++  e+k v   +l++r nvs  s+   l++L+ +G ++
      CTQ29108.1  9 QILQILTEEKQVMSGELSQRFNVSEDSIRRDLRELAAEGKLQ 50
                    68888899999999**********************999665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1970.57
//
Query:       CTQ29109.1  [L=335]
Description: nucleotide associated protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-96  323.8   0.0    1.5e-96  323.6   0.0    1.0  1  NA37      37-kD nucleoid-associated bacterial protein


Domain annotation for each model (and alignments):
>> NA37  37-kD nucleoid-associated bacterial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.6   0.0  8.2e-101   1.5e-96       2     309 .]      10     324 ..       9     324 .. 0.96

  Alignments for each domain:
  == domain 1  score: 323.6 bits;  conditional E-value: 8.2e-101
        NA37   2 iHildknsdeeilse.....leldendeiveylvkhlnkifkskegkygrFsedseelfaellkeylegeeddFvefSkklaeqLfeeleknesaesGd 95 
                 +H+l k ++++   e     + l e +++v +++++l++++++k++ yg F+e+se  +a++l+  ++gee +F++fS++++ +L++el+k+++ae+G 
  CTQ29109.1  10 LHQLIKRDEQNL--ElvlreSLL-EPNATVVEMMAELHRVYSAKSKAYGLFNEESE--LAQALRLQRQGEE-EFLAFSRAATGRLRDELAKYPFAEGGI 102
                 8******99966..344454888.7********************77*********..***********88.8************************** PP

        NA37  96 llvvhyeseatdy..iailkseykkafthnleleedkhldlqkldkaarInltew.....ssrylsfidkragrkdvsyffedfLgceegvdskkqtkk 187
                 +l+++y+++a++y  +a+l++ ++++++++l++ ++++ld+++ d++arI+ltew     s ryl+f+++r+grk v++ff+dfLg++eg+++k+q++ 
  CTQ29109.1 103 VLFCQYRYLAVEYllVAVLNNLSSMRVNEELDIRSTHYLDINHADIVARIDLTEWetnpeSTRYLTFLKGRVGRK-VADFFMDFLGASEGLNAKAQNRG 200
                 **************************************************************************9.*********************** PP

        NA37 188 llkavedfakkeeldkaekqelrkrvveylkeqleegesvdleelaeelfkdnpee.kefvkeeeeyeleeefpvdkekklkklkkfigsgigisisfd 285
                 ll+av+dfa++ +ldk e+q++r++v++y++eql++ge+++le l++el   ++++ +ef+ e + yelee+fp+d+ ++l++l+kf gsg+g++i+fd
  CTQ29109.1 201 LLQAVDDFAADAQLDKSERQNVRQQVYAYCNEQLQAGEEIELESLSKELAGVSEKSfQEFTAE-QGYELEESFPADR-STLRQLTKFAGSGGGLTINFD 297
                 ***************************************************777678999999.*************.********************* PP

        NA37 286 re...ervsnddgtdtltIkgippnlk 309
                 ++   erv++d++tdtltIkg+ppnl+
  CTQ29109.1 298 AMllgERVFWDPATDTLTIKGTPPNLR 324
                 99***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2725.77
//
Query:       CTQ29110.1  [L=87]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-25   88.7   1.1    1.7e-25   88.7   1.1    1.5  2  DUF1414   Protein of unknown function (DUF1414)
  ------ inclusion threshold ------
      0.063   12.1   0.2      0.074   11.9   0.2    1.0  1  DUF4487   Domain of unknown function (DUF4487)


Domain annotation for each model (and alignments):
>> DUF1414  Protein of unknown function (DUF1414)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.87   7.8e+03      17      21 ..      32      36 ..      31      37 .. 0.74
   2 !   88.7   1.1   1.9e-29   1.7e-25       1      44 []      38      81 ..      38      81 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.87
                HHHHT CS
     DUF1414 17 Tniln 21
                Tn+l+
  CTQ29110.1 32 TNVLE 36
                99986 PP

  == domain 2  score: 88.7 bits;  conditional E-value: 1.9e-29
                CT-HCHHHHHHHHHHHHHHHTTTS-CCCHHHHHHHHHHHHHHHH CS
     DUF1414  1 hkApvDLsLmvLGNmvTnilnssVpeaqRealAekFaqALknSv 44
                hkApvDLsLmvLGNmvTn++nssV++aqR+a+A +FaqAL++S+
  CTQ29110.1 38 HKAPVDLSLMVLGNMVTNLINSSVAPAQRQAIARSFAQALQSSI 81
                9******************************************7 PP

>> DUF4487  Domain of unknown function (DUF4487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   8.3e-06     0.074     463     517 ..      18      73 ..      13      79 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.3e-06
     DUF4487 463 llepdeleqvlleLqslfiseppdsdl.klallkflasLgklevpedeqnqvlpal 517
                  ++ ++ eq+l+eL+++++s  + +dl  + l +++++L + +v++ ++++++++ 
  CTQ29110.1  18 RYSDQQVEQLLSELTNVLESHKAPVDLsLMVLGNMVTNLINSSVAPAQRQAIARSF 73 
                 6899***********************4555556779*********9999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 633.39
//
Query:       CTQ29111.1  [L=586]
Description: putative hydrolase, inner membrane-associated [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.1e-103  344.2  14.2   4.2e-103  343.8  14.2    1.2  1  DUF3413        Domain of unknown function (DUF3413)
    4.2e-28   98.6   1.7    9.4e-28   97.5   0.3    2.1  2  Sulfatase      Sulfatase
    3.2e-07   29.3   0.0    0.00054   18.7   0.0    2.1  2  DUF229         Protein of unknown function (DUF229)
     0.0023   17.6   0.0       0.59    9.7   0.0    2.2  2  Phosphodiest   Type I phosphodiesterase / nucleotide pyrophos
  ------ inclusion threshold ------
      0.065   12.3   0.0       0.11   11.5   0.0    1.3  1  DUF1501        Protein of unknown function (DUF1501)
      0.076   12.4   0.0       0.12   11.7   0.0    1.2  1  Metalloenzyme  Metalloenzyme superfamily


Domain annotation for each model (and alignments):
>> DUF3413  Domain of unknown function (DUF3413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.8  14.2  1.4e-106  4.2e-103       2     247 ..       6     252 ..       5     253 .. 0.99

  Alignments for each domain:
  == domain 1  score: 343.8 bits;  conditional E-value: 1.4e-106
     DUF3413   2 kkyrekvsqlirwghwFalfnillalliglrYlfasdlPetllgllYlvvsllghfsflafliyllvlfpltflipsrrllrglaviiatlglilLlvD 100
                 + yrekvsq+++wghwFalfn+lla+++g+rYlf++d+P+tl+g+l+  vsl+ghfsfl+f  y+l+lfpltf++ s+rl+r+l+vi+at+g++lLl+D
  CTQ29111.1   6 QPYREKVSQMVSWGHWFALFNMLLAMVLGSRYLFVADWPTTLAGRLFSYVSLVGHFSFLVFTSYVLILFPLTFIVVSQRLMRFLSVILATAGMTLLLID 104
                 679************************************************************************************************ PP

     DUF3413 101 tevfqqyklHLnpvvlelllngeqselssswllllilvlvilllelllanlvwkklrklk.rkklgkpvalvlllaflashlihiwadAnlyrpitqqk 198
                 +evf++++lHLnpvv+el++n++q+e++++w+l++i v+vi+l+e+l+a+++w+klr+l+ r+++++pva +++l+f++shl +iwadAn+yrpit+q+
  CTQ29111.1 105 SEVFTRFHLHLNPVVWELVINPDQNEMARDWQLMFISVPVIFLIEMLFATWSWQKLRSLTrRRHYARPVAWFFFLSFVSSHLAYIWADANFYRPITMQR 203
                 ***********************************************************98999*********************************** PP

     DUF3413 199 anlPLsypltAksflekhglldeeeyeerkaeqerksasslnYPleplq 247
                 anlPLsyp+tA++flekhglld+++y++r +eq++++a s++YPl++l 
  CTQ29111.1 204 ANLPLSYPMTARRFLEKHGLLDAQDYQRRLVEQGAPEAVSVQYPLSNLR 252
                 *********************************************9996 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.25   7.6e+02     173     192 ..     175     195 ..     158     203 .. 0.80
   2 !   97.5   0.3   3.2e-31   9.4e-28       2     305 ..     261     500 ..     260     504 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.25
                 EEEEEEE-TTSSST.CTCGGH CS
   Sulfatase 173 fflylatlapHapp.eapdey 192
                 +f++l++ ++H ++ +a++ +
  CTQ29111.1 175 WFFFLSFVSSHLAYiWADANF 195
                 9**********9777777766 PP

  == domain 2  score: 97.5 bits;  conditional E-value: 3.2e-31
                 EEEEEEESSE-TTGSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTTHHCTTTS-HHHHHHHHTT-EEEEEE CS
   Sulfatase   2 nvvliladdlgagdlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgggglpqteatLpellkeaGYntaaig 100
                 nv+li++d l   + + ++    t+p+l++ a+e ++ft+++s++++    ++ l+ g +p  ++         +  ++ +a+L++ l+++GY+     
  CTQ29111.1 261 NVLLITVDNL---NYSRFEK---TMPALAAFAKENVNFTQHMSSGNTADSGLFGLFYGISPGYMDG--------VLSARIPAALITALNQQGYQL---- 341
                 8999999999...3333333...699*******************999999***********9983........788999***************.... PP

                 ES-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHH.HCCC.TSSEEEEEEE-TTSSSTCTCGGHTCCGS CS
   Sulfatase 101 kwhlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrvppeggysddrlldealefl.larn.dkpfflylatlapHappeapdeyakkya 197
                     g++s      ++gf++ l ++++ ++++ p++ +             +sd++ +++++++l + ++ ++ +f++++++++       d+ +++  
  CTQ29111.1 342 ----GLFS------SDGFSSPLYRQALLSDFSLPSAKT-------------QSDEQTANQWIGWLdRYAQdENRWFSWISLNGTTL-----DDTQQQ-- 410
                 ....7773......567999999999999999988554.............89*************55555*************97.....566566.. PP

                 TTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCEEECSEEEG CS
   Sulfatase 198 tffddgseaarqlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekaprvseelvsh 296
                              ++ y  +   vD +i+rvl aL+e+g+ldnt+v++t+ hg  l+      ++    +++ ++++vPl+++wpg+ a+   ++l+++
  CTQ29111.1 411 -----------GFVRRYSKAAGDVDAQIDRVLTALREAGKLDNTVVIITGGHGKPLNA-----KHDAF-DWSREQLQVPLVIHWPGTPAQ-EIATLTDN 491
                 ...........78*******************************************55.....55555.89999****************.******** PP

                 GGHHHHHHH CS
   Sulfatase 297 iDlfptild 305
                  D+++t+++
  CTQ29111.1 492 KDVMTTLMQ 500
                 *******97 PP

>> DUF229  Protein of unknown function (DUF229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00023      0.68     126     155 ..     259     289 ..     232     296 .. 0.88
   2 !   18.7   0.0   1.8e-07   0.00054     280     349 ..     377     458 ..     361     514 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00023
      DUF229 126 kysVlilglDSlSrmnfaRslprtveflk.k 155
                  y+Vl++++D l+++ f++++p ++ f k +
  CTQ29111.1 259 GYNVLLITVDNLNYSRFEKTMPALAAFAKeN 289
                 59************************99844 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.8e-07
      DUF229 280 dylrqflerysnsr..lfgffwsnslshdkfnlleal..........DedllkylkklekkgllentlvlllsDHGlrfgkl 349
                 + +   l+ry ++    f++++ n  + d+ +  + +          D ++ ++l++l++ g l+nt+v++ + HG   ++ 
  CTQ29111.1 377 NQWIGWLDRYAQDEnrWFSWISLNGTTLDDTQQQGFVrryskaagdvDAQIDRVLTALREAGKLDNTVVIITGGHGKPLNAK 458
                 55555677776666568888888888888888888888888888888*****************************765554 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0     0.003       8.8       1      43 [.     262     301 ..     262     304 .. 0.90
   2 !    9.7   0.0    0.0002      0.59     197     236 ..     416     455 ..     380     495 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.003
                   EEEEEETT-BTTHHHHHGSTSHHHHHHHHHSEEESEEE-SSS- CS
  Phosphodiest   1 vlvislDGlradlldrlaellpnlaaLakegvsapnlrpvfPt 43 
                   vl+i++D l  + +++   ++p laa+ake v+++++ ++ +t
    CTQ29111.1 262 VLLITVDNLNYSRFEK---TMPALAAFAKENVNFTQHMSSGNT 301
                   7999999999999998...****************98887776 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0002
                   HHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EE CS
  Phosphodiest 197 vedalrrvDkaigdLlealderglsaetniilvSDHGmad 236
                     +a  +vD+ i++ l al+e g  ++t +i+++ HG   
    CTQ29111.1 416 YSKAAGDVDAQIDRVLTALREAGKLDNTVVIITGGHGKPL 455
                   5678889***************9999999********544 PP

>> DUF1501  Protein of unknown function (DUF1501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.8e-05      0.11     265     302 ..     415     452 ..     408     460 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.8e-05
     DUF1501 265 ahkklakelDqalaaLlkdLkqrGllddTlVvwagEFG 302
                 + +k a ++D  ++  l++L + G ld+T+V+ +g  G
  CTQ29111.1 415 RYSKAAGDVDAQIDRVLTALREAGKLDNTVVIITGGHG 452
                 678899***************************99766 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.9e-05      0.12     132     215 ..     394     479 ..     368     503 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.9e-05
                    -SEEEEEE-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHTTS-T....TTEEEEEE-SSB--TTTSS........-----EEEEEESTT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 132 fdlvvvniknaDmvGHtgdleatiaaieaaDeavkeildaieq....vdgilvvtADHgnaedmvkrdkqplTsHtlepVPilivgkg 215
                    f+ + +n    D    +g + ++ +a  ++D+++ ++l a+++    +++++++t+ Hg + + ++ d   ++     +VP++i+ +g
     CTQ29111.1 394 FSWISLNGTTLDDTQQQGFVRRYSKAAGDVDAQIDRVLTALREagklDNTVVIITGGHGKPLNAKH-DAFDWS-REQLQVPLVIHWPG 479
                    66788899999999999999******************99987222255789********999998.332222.22335777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4183.16
//
Query:       CTQ29112.1  [L=369]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-50  171.3  34.0    3.9e-50  170.9  34.0    1.0  1  AI-2E_transport  AI-2E family transporter
  ------ inclusion threshold ------
       0.25   11.0   0.2       0.25   11.0   0.2    3.4  4  DUF3149          Protein of unknown function (DUF3149)
        1.4    8.8   5.5       0.62    9.9   0.2    2.5  3  Wzy_C_2          Virulence factor membrane-bound polymerase, 
        3.5    7.4  15.4        6.7    6.5   5.0    3.0  2  Oleosin          Oleosin


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.9  34.0   8.7e-54   3.9e-50       3     322 ..      11     339 ..       9     343 .. 0.89

  Alignments for each domain:
  == domain 1  score: 170.9 bits;  conditional E-value: 8.7e-54
  AI-2E_transport   3 lilvllllllalypfiselllplliAlvlayllnpvvkfL.kkrgvkrvlavllvlllllvllvllvlllvplliaqltqlvkslp.......a 88 
                      +il+ ++++la+  ++s++   +l+A++la+++npv++++ ++ g +  la+l++++++ ++++ ++++++++l+  l+ + ++l+       +
       CTQ29112.1  11 FILIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPVKNKIrTRLGERNGLAALMTIVIICLIVFTPLAIILSSLAYELNLVYSKLQhndtqfpT 104
                      455555555555556669**********************889999999****99999999999999999999999999888888855555556 PP

  AI-2E_transport  89 yidslqnilnelpslleelen..liqalkqslskilsnilssilnsllsllasllglilslvlvllllffllldgeklrqgilkllpervrerv 180
                      +++sl ++l  + +++   +n   +q+++q+ls+ + +  ++++ s+  + + ++g+++s+ ++l+llffll+dg  l+  il  lp +   + 
       CTQ29112.1 105 VVASLFAHLPGWARSFLADHNldSAQQIQQQLSDAALKGGQYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLLILESLPLSSYVKQ 198
                      66666666666666666666479******************************************************************55555 PP

  AI-2E_transport 181 kailrelektlsgylrgqvlvaliigvlvfigllilgvpyalllailvglanliPyiGavivlipiaiialltggikevlivlivvllvqlieg 274
                        +++  + + +++++g+v val++g l+++ ++i+g++ ++l++ l+ +++liP +G++i+++p+ai+++ tg+ + + +++ ++++v  +++
       CTQ29112.1 199 HLFAKF-AAVARATVKGTVAVALAQGALGGFAFWIAGLDGSILWGALMAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVD 291
                      555555.5557*********************************************************************************** PP

  AI-2E_transport 275 nilePklmgkrlglhplvillsllaggklfGlvGlilavpltavikai 322
                      nil+P l+gk+++++  +il++ l+g +++G+ G+ ++++++a++ a 
       CTQ29112.1 292 NILRPLLVGKDTRMPDYLILIATLGGMEIYGINGFVIGPLIAALFIAC 339
                      ********************************************9886 PP

>> DUF3149  Protein of unknown function (DUF3149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   3.2         4   1.8e+04      17      23 ..      12      18 ..       9      23 .. 0.39
   2 ?   11.0   0.2   5.7e-05      0.25       8      25 ..      57      74 ..      54      76 .. 0.87
   3 ?   -3.3   0.8       1.6   7.1e+03      21      28 ..     165     172 ..     163     176 .. 0.79
   4 ?   -2.6   2.9      0.99   4.4e+03      15      24 ..     279     288 ..     276     290 .. 0.61

  Alignments for each domain:
  == domain 1  score: -5.3 bits;  conditional E-value: 4
     DUF3149 17 Ivftigm 23
                I++++++
  CTQ29112.1 12 ILIVFIV 18
                2233322 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 5.7e-05
     DUF3149  8 dvGLlSliVIvftigmga 25
                 +GL+ l++Iv++++++ 
  CTQ29112.1 57 RNGLAALMTIVIICLIVF 74
                68**************96 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.6
     DUF3149  21 igmgaffi 28 
                 +g++++ +
  CTQ29112.1 165 FGIMLYLL 172
                 89999976 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 0.99
     DUF3149  15 iVIvftigmg 24 
                 iV +f+i++g
  CTQ29112.1 279 IVGFFVIVIG 288
                 4556666666 PP

>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00014      0.62      21      95 ..      29     105 ..      28     139 .. 0.66
   2 ?   -3.2   0.2       1.5   6.6e+03      35      64 ..     186     219 ..     180     231 .. 0.45
   3 ?    1.0   0.0     0.079   3.6e+02      20      38 ..     273     292 ..     273     320 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00014
     Wzy_C_2  21 wYspfllaaflvl.glldsksrsrrlrlrpklvlrvvalvlallglalllsilhdyq.rleqlyltsepneaalrev 95 
                 +Ys++l+aa+l++ +   +++  +rl+ r  l+++++ +++ l++   l+ il++ +  l  +y + + n+ +++ v
  CTQ29112.1  29 YYSAILWAAILAViFNPVKNKIRTRLGERNGLAALMTIVIICLIVFTPLAIILSSLAyELNLVYSKLQHNDTQFPTV 105
                 9********99984433334555555555555555555555555555566666665546666666666666666655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.5
     Wzy_C_2  35 llds....ksrsrrlrlrpklvlrvvalvlallg 64 
                 +l+s     + +++l ++ + v+r+++  +++++
  CTQ29112.1 186 ILESlplsSYVKQHLFAKFAAVARATVKGTVAVA 219
                 4444444433333444443344444333333333 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.079
     Wzy_C_2  20 lwYspfllaaflvl.gllds 38 
                 lw+++f + +f+++ gl+d+
  CTQ29112.1 273 LWQGAFIVGFFVIViGLVDN 292
                 8******99999998***98 PP

>> Oleosin  Oleosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   2.7     0.004        18      24      42 ..      64      82 ..      59      86 .. 0.84
   2 ?    6.5   5.0    0.0015       6.7      17      76 ..     233     289 ..     215     308 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.004
     Oleosin 24 LagtvigLavatPllvlfS 42
                ++  +i+L+v+tPl ++ S
  CTQ29112.1 64 MTIVIICLIVFTPLAIILS 82
                566799**********998 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0015
     Oleosin  17 LlLsGltLagtvigLavatPllvlfSPvlvPaaiviaLavagflasgafgvaalsslswl 76 
                   L G +L g++++++ ++P  v +  ++vPaai   L ++g l  gaf+v++ + +  l
  CTQ29112.1 233 AGLDGSILWGALMAFLSLIPA-VGSAIIWVPAAI--YLFATGQLWQGAFIVGFFVIVIGL 289
                 345566899999999999996.667789***986..5779***********988776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       917  (0.0511462); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2636.10
//
Query:       CTQ29113.1  [L=163]
Description: ecotin, a serine protease inhibitor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-54  180.8   0.0    9.5e-54  180.6   0.0    1.0  1  Ecotin    Ecotin


Domain annotation for each model (and alignments):
>> Ecotin  Ecotin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.6   0.0   5.3e-58   9.5e-54       2     122 .]      31     153 ..      30     153 .. 0.99

  Alignments for each domain:
  == domain 1  score: 180.6 bits;  conditional E-value: 5.3e-58
      Ecotin   2 lapyPkaeegqkrhvielpkkedeadykveliiGktlevdcnkqrlsGeleektlegwgysyyvvkkakklastlmacpdeakkekFvs..lgekellr 98 
                 +ap+Pkae+g+kr+vi+lp+++de+ +kvel+iG+tlevdcn++rl+Gele+ktlegwgy+yyv++k + ++st+macpd +k++kFv+  lg++++lr
  CTQ29113.1  31 VAPFPKAEKGMKRQVIQLPQQQDESALKVELMIGQTLEVDCNHHRLGGELESKTLEGWGYDYYVFEKLSGPVSTMMACPDGKKEKKFVTagLGDDAMLR 129
                 79***************************************************************************************9********* PP

      Ecotin  99 ynsklpvVvyvPkdaevrYriWka 122
                 ynsklp+Vvy+P++++v+YriW+a
  CTQ29113.1 130 YNSKLPIVVYTPSNVDVKYRIWRA 153
                 **********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1309.21
//
Query:       CTQ29114.1  [L=544]
Description: malate dehydrogenase, FAD/NAD(P)-binding domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.2e-230  764.1   0.0     6e-230  763.9   0.0    1.0  1  Mqo       Malate:quinone oxidoreductase (Mqo)
    2.3e-07   30.7   0.1    4.8e-07   29.7   0.1    1.5  2  DAO       FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  763.9   0.0  6.7e-234    6e-230       2     489 .]      27     514 ..      26     514 .. 0.99

  Alignments for each domain:
  == domain 1  score: 763.9 bits;  conditional E-value: 6.7e-234
         Mqo   2 kvdvvliGaGimsatlgvllkelepelsievlerldkvaeessnawnnaGtGHsalcElnYtpekedgsidiskAvkineqfevsrqfwaylvekgllk 100
                 ++dv+liG+Gimsatlg++l+elep++si+++e++++vaeessn wnnaGtGH+al+ElnYtp++++g i+i+kAv+ine+f++srqfwa++v++g+l+
  CTQ29114.1  27 ETDVLLIGGGIMSATLGTWLQELEPDWSITMVEQMSSVAEESSNGWNNAGTGHAALMELNYTPQTANG-INIDKAVDINEAFHISRQFWAHQVTRGVLN 124
                 79***************************************************************887.9***************************** PP

         Mqo 101 dpkefinkvpHlsfvageenveflkkRyealkksplfegmeysedkeelkewlPlvmegRdakekvaatrieeGtdvnfgaltrqllkalekkkgvelk 199
                 +pk+fin+vpH+sfv+ge+nv+fl++Ry+al++s+lf+g++ysed++++k w+PlvmegRd+ +kvaatr+e Gtdvn+g++trql++ l+k+++++l+
  CTQ29114.1 125 KPKSFINSVPHMSFVWGEDNVNFLRARYAALQQSELFRGIRYSEDHQQIKAWAPLVMEGRDPLQKVAATRSEVGTDVNYGEITRQLIAGLQKHDNFSLQ 223
                 *************************************************************************************************** PP

         Mqo 200 lkhevkdlkreedgkWkvkvkdl.ktgekkkvkakfvfiGaGGgalklLqksgipeakgyggfPvsGqflvcknpevveqheakvYgkaavgaPPmsvp 297
                 l++ v+++kr++d++W+v+++d  ++++k+ +kakf+fiGaGG+al+lLq++gip+ak+y+gfPv+Gqflvc+npevv++h akvYg+a+vgaPPmsvp
  CTQ29114.1 224 LGTVVRRFKRNADKSWTVTLADAdNRRQKRVIKAKFIFIGAGGAALTLLQETGIPQAKEYAGFPVGGQFLVCENPEVVNHHLAKVYGQAEVGAPPMSVP 322
                 **********************9566778899******************************************************************* PP

         Mqo 298 HlDtRvidgkksllfGPfagfstkflkegslldllksvklsnllpllavglknldLvkYlieqvlkskedrlealreflpeakkedWelvvaGqRvqvi 396
                 H+DtR+idgk+++lfGPfa+fst+flk+gsl+dll+s ++sn+lp+l+vgl+n+dLvkYli+qv+++++drl+al e++pea+kedW+l++aGqRvq+i
  CTQ29114.1 323 HIDTRIIDGKRVVLFGPFATFSTRFLKNGSLWDLLASTNTSNILPMLNVGLDNFDLVKYLISQVMQKDKDRLAALCEYYPEARKEDWRLWQAGQRVQII 421
                 *************************************************************************************************** PP

         Mqo 397 kkdeekggvlefGtevvasadgslaalLGasPGAstavsimlevlekcfkeklkseewkeklkelipsygkkleedaelleevrketakvLkl 489
                 k+d++kggvl++Gtevv++++g++aalLGasPGAsta++iml+++ek+fk+k++s+ew++klk++ip+yg +l  +++ +e+  ++t++vL+l
  CTQ29114.1 422 KRDAKKGGVLRLGTEVVSDDEGTVAALLGASPGASTAAPIMLQLMEKVFKDKVNSPEWQAKLKAIIPTYGIRLDGNPAEIEKALAWTSEVLEL 514
                 *******************************************************************************************87 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.1   5.4e-11   4.8e-07       1     237 [.      29     302 ..      29     415 .. 0.71
   2 ?   -2.0   0.0      0.24   2.1e+03     153     171 ..     422     439 ..     374     459 .. 0.63

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 5.4e-11
                 EEEEECTSHHHHHHHHHHHHT.T...EEEEESSSSTTSSGG..GSSEEEEESSS...STHHSTH.........HHHHHHHHHHHHHHHHHHHHSSTTSE CS
         DAO   1 dvviiGGGiiGlstAyeLarr.g...VtllekgdiagsgaS..grnsgllhsgl...rylpeas.........elarlslealeelreleeelgididy 81 
                 dv+ iGGGi+ ++   +L++  +   +t +e+ + +++++S  ++n+g  h++l    y+p+           ++ +  + +++++++   + g+ +  
  CTQ29114.1  29 DVLLIGGGIMSATLGTWLQELePdwsITMVEQMSSVAEESSngWNNAGTGHAALmelNYTPQTAnginidkavDINEAFHISRQFWAHQVTR-GV-LNK 125
                 8999**************86644899***********5444337888888998877744554337999999998878888889999888877.55.555 PP

                 EEEEEEEEES.....SHHHHHHHHHHHHHHHHTTT.TE.EEEEH.HHHHHHSTT.ST.....TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT.-EEEE CS
         DAO  82 rrtGllslaa.....deeelealdkllallleagl.da.ellda.eevrelepa.lp.....gllgalfypdtgqvdpakltaalaraaealG.veile 165
                 +++   s+ +     +e++ + l++++a+l++  l +  ++ +  +++++++p   +     + ++a  +  +  v++ + t+ l + ++++    + +
  CTQ29114.1 126 PKSFINSVPHmsfvwGEDNVNFLRARYAALQQSELfRGiRYSEDhQQIKAWAPLvMEgrdplQKVAATRSEVGTDVNYGEITRQLIAGLQKHDnFSLQL 224
                 55555555544455566679999999999965555544466444489******98334565543466778888999*************999758**** PP

                 SECEEEEEEEETCEEEEE.....EECTEEE.EEEEE...EEE--GGGHHHH.HTT..CTT.TSEEEEEEEEEEEEEECCTHSTGS CS
         DAO 166 gtevtgleeedgkvwgve.....rttpgen.daada...vVnaaGawsdll.gll..kel.dlpispvrgqvlvlkplseklvsp 237
                 gt v++++++ +k w+v      +    ++ + ++a    + a Ga  +ll + +  ++  +    pv gq lv ++++     +
  CTQ29114.1 225 GTVVRRFKRNADKSWTVTladadN---RRQkRVIKAkfiFIGAGGAALTLLqE-TgiPQAkEYAGFPVGGQFLVCENPEV---VN 302
                 *******9988999***9975321...22224456667556666666557743.32444433344899999999955332...22 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.24
                 HHHHHHTT-EEEESECEEE CS
         DAO 153 araaealGveilegtevtg 171
                  r+a ++G+ +++gtev++
  CTQ29114.1 422 KRDA-KKGGVLRLGTEVVS 439
                 3333.34555777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4340.46
//
Query:       CTQ29115.1  [L=412]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-38  131.5  45.0    9.4e-23   80.6  11.0    2.4  3  Sulfate_transp  Sulfate permease family
    5.2e-08   33.3  45.6    2.1e-05   24.9   6.6    4.1  4  MFS_MOT1        Molybdate transporter of MFS superfamily
  ------ inclusion threshold ------
        9.5    4.9  17.6      0.036   12.9   1.6    3.3  3  HCO3_cotransp   HCO3- transporter family


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8  17.6     1e-21   5.9e-18       1     134 [.      23     149 ..      23     153 .. 0.97
   2 !   80.6  11.0   1.6e-26   9.4e-23     165     354 ..     155     340 ..     150     350 .. 0.84
   3 ?   -3.3   1.0      0.47   2.8e+03     326     352 ..     363     389 ..     360     393 .. 0.59

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 1e-21
  Sulfate_transp   1 lkgDliaGitvallaiPqalayallaglppiygLyssvvpqlvyalfGtsrqlavGpvavlslivgeiiakvaeeepekgieiattltllaGviq 95 
                     l+ +++aG+++al +iP  ++++++ag++p++ L++svv  l  ++fG+ + ++  + + ++l++g ++ +        g+   + +++laG+iq
      CTQ29115.1  23 LTREVLAGVLTALALIPEVISFSVIAGVDPQVSLIASVVLCLAMSVFGGRPAMVTAAAGSVALVIGPMVHQH-------GVGYILPAVILAGIIQ 110
                     57799*****************************************************************77.......999999********** PP

  Sulfate_transp  96 vllGllRLgflveflseavlsGfiaGaaivillsqikvl 134
                     +l+Gl  +++l++f++ av++Gf+ + +i i+++q+ ++
      CTQ29115.1 111 ILFGLCGMARLMRFIPPAVMTGFVNALGILIFFAQVPHF 149
                     ************************************987 PP

  == domain 2  score: 80.6 bits;  conditional E-value: 1.6e-26
  Sulfate_transp 165 vvlgllllvvLlvtkellkklkkllvipapaelvavivatlvsaif.elkreagvkivgeipsg...lpelslpkvdwsllsallpdalaialvg 255
                     +++gl++l++L+v         +++   +pa+l+a+++ tl +a++ +  +   v   g+++ g   + +l +p ++  +l+ + p al+ia+vg
      CTQ29115.1 155 LIVGLFVLTLLIVLWA------QRVIKAIPAPLIAIVALTLYTATTgQ--QLPTVGDEGSMSGGlpgFTALTVP-LNLTTLQIIWPCALSIAFVG 240
                     5667776666655433......458999*****************953..323333346666651115666666.88888*************** PP

  Sulfate_transp 256 lleaiavsksldkkkgykvdsnkELvAlGfsNilsslfgglpatgafsrsavnikaG.aktqlsglvsalvvllvllvltplleyiPkavLaaii 349
                     l+e+++++k +d  +++  +  +E  +lG++Nil++  gg++  + + ++ vn++ G a+++ls+++ +lv+ll++ +l+++++ iP+avLa+++
      CTQ29115.1 241 LMESLLTAKLVDDLTHTPSNKSRESAGLGIANILAGGYGGIAGCAMIGQTIVNVEMGrARSRLSTVIAGLVLLLLVTALSQVMAKIPMAVLAGVM 335
                     ********************************************************989********************************9876 PP

  Sulfate_transp 350 ivagk 354
                     +++++
      CTQ29115.1 336 VIVAV 340
                     66554 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.47
  Sulfate_transp 326 vllvllvltplleyiPkavLaaiiiva 352
                     v+lv +++t   +++ + vLa+i+ +a
      CTQ29115.1 363 VMLVTVAATVGTSNLAIGVLAGIVAMA 389
                     555666666666666666666666555 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  15.8   2.8e-06     0.017       4     109 ..      29     139 ..      26     141 .. 0.82
   2 !    9.0   1.3   0.00031       1.8      73     105 ..     155     187 ..     150     190 .. 0.92
   3 !   24.9   6.6   3.5e-09   2.1e-05      33     109 ..     265     340 ..     208     342 .. 0.87
   4 ?   -0.6   0.5      0.28   1.7e+03      65      85 ..     369     389 ..     361     401 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.8e-06
    MFS_MOT1   4 sgalgdlglTllnlvialaalaslsltalllsvGlmnlltglfggvPmc....hgAgglaaqyrf.......gartgaagillGlvllllgltgllerl 91 
                 +g+l  l+  l++ vi+ +++a+++++  l+ + ++ l++++fgg P      +   g +a +            +  a+il G++ +l+gl+g + rl
  CTQ29115.1  29 AGVLTALA--LIPEVISFSVIAGVDPQVSLIASVVLCLAMSVFGGRPAMvtaaA---GSVALVIGpmvhqhgVGYILPAVILAGIIQILFGLCG-MARL 121
                 56666666..9************************************8886442...333332223444456999999***************8.999* PP

    MFS_MOT1  92 lrliPksvlgglllgaGl 109
                 +r+iP +v+ g + ++G+
  CTQ29115.1 122 MRFIPPAVMTGFVNALGI 139
                 *************99997 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00031
    MFS_MOT1  73 illGlvllllgltgllerllrliPksvlgglll 105
                 +++Gl++l+l ++++ +r+ ++iP +++ ++ l
  CTQ29115.1 155 LIVGLFVLTLLIVLWAQRVIKAIPAPLIAIVAL 187
                 79**************************98866 PP

  == domain 3  score: 24.9 bits;  conditional E-value: 3.5e-09
    MFS_MOT1  33 llsvGlmnlltglfggvPmchgAgglaaqyrf.gartgaagillGlvllllgltgllerllrliPksvlgglllgaGl 109
                 +  +G++n+l+g +gg+  c++ g  + +++   ar+  + ++ Glvllll    +l+++++ iP++vl g+++++++
  CTQ29115.1 265 SAGLGIANILAGGYGGIAGCAMIGQTIVNVEMgRARSRLSTVIAGLVLLLLVT--ALSQVMAKIPMAVLAGVMVIVAV 340
                 56689***************99999999988789************9999855..57*****************9987 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.28
    MFS_MOT1  65 gartgaagillGlvllllglt 85 
                 +a +g++++ +G++  ++++ 
  CTQ29115.1 369 AATVGTSNLAIGVLAGIVAMA 389
                 455666666666665555554 PP

>> HCO3_cotransp  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.3     0.018   1.1e+02      69      99 ..      55      85 ..      35      93 .. 0.85
   2 ?    0.4   0.9     0.037   2.2e+02     434     460 ..     108     133 ..     102     156 .. 0.84
   3 ?   12.9   1.6     6e-06     0.036     429     468 ..     302     342 ..     289     348 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.018
  HCO3_cotransp 69 slvsaaisgilfalfagqpllilgstgPllv 99
                   sl++ ++  +++++f+g+p ++  + g +++
     CTQ29115.1 55 SLIASVVLCLAMSVFGGRPAMVTAAAGSVAL 85
                   78899999999***********999999876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.037
  HCO3_cotransp 434 lvfiliglsvlltpvlklIPmpVLyGv 460
                    +++il gl+  +++++++IP +V+ G 
     CTQ29115.1 108 IIQILFGLC-GMARLMRFIPPAVMTGF 133
                    577888886.5899**********996 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 6e-06
  HCO3_cotransp 429 Rvtgllv.filiglsvlltpvlklIPmpVLyGvFLYmgvts 468
                    R++++++  +l+ l   l +v++ IPm+VL Gv + ++v  
     CTQ29115.1 302 RLSTVIAgLVLLLLVTALSQVMAKIPMAVLAGVMVIVAVKT 342
                    66665551566667777999**************9999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       992  (0.0553294); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 2715.22
//
Query:       CTQ29116.1  [L=478]
Description: Magnesium transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-24   86.8  11.3    2.4e-24   86.1  11.3    1.4  1  MgtE      Divalent cation transporter
    1.9e-23   83.0   0.4    1.9e-23   83.0   0.4    2.9  3  MgtE_N    MgtE intracellular N domain
    3.1e-10   40.3   0.7      2e-05   24.9   0.3    2.7  2  CBS       CBS domain
  ------ inclusion threshold ------
      0.053   13.5   0.5         20    5.2   0.1    3.2  3  DUF3659   Protein of unknown function (DUF3659)
       0.17   12.1   0.0       0.44   10.8   0.0    1.7  1  IreB      IreB regulatory phosphoprotein


Domain annotation for each model (and alignments):
>> MgtE  Divalent cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1  11.3   6.7e-28   2.4e-24       1     123 [.     349     470 ..     349     471 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 6.7e-28
                 HHHHHHHHHHHHHHHHHHHHHHHHTTSS-GG.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-.CTSHHHHHHHHHHHHHHHHHH..HHHHHHHHHHT CS
        MgtE   1 iPvilglgGnlgaqlasristalhlgelekk.lkkvllkelrvvlllgvilgllifllalllgwslllalvvglalvlvllaaallilgvllplllwkl 98 
                 +P+++g+gGn+g+q+ ++i++a++l+++++  +  ++l+e+ v+l++g+++g ++++++++l+ +++l+ v++la++l+ll+aa++  gv++p+++ kl
  CTQ29116.1 349 MPIVAGIGGNTGNQTITMIVRAMALQQIQPGsFTFLILREMGVALINGLVWGGIMGAITWWLYDDPQLGGVMTLAMMLNLLMAAMM--GVIIPMVMVKL 445
                 8***************************99999*****************************************************..*********** PP

                 TS-GGGSHHHHHHHHHHHHHHHHHH CS
        MgtE  99 glDPdnaaiPlltalgDllgtlllv 123
                 g DP++ ++ ++ta++D  g+++++
  CTQ29116.1 446 GRDPAVGSSVMITAITDTGGFFIFL 470
                 **********************996 PP

>> MgtE_N  MgtE intracellular N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.57     2e+03      13      30 ..      11      28 ..       8      41 .. 0.59
   2 !   83.0   0.4   5.3e-27   1.9e-23       2     102 .]      63     163 ..      62     163 .. 0.98
   3 ?    1.1   0.2      0.17   5.9e+02      42      79 ..     255     292 ..     242     303 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.57
                S-HHHHHHHHHHS-HHHH CS
      MgtE_N 13 lpeeeraallrllpkeea 30
                l +eera+l+ ll++++a
  CTQ29116.1 11 LRDEERARLIWLLSTDKA 28
                344444444444444443 PP

  == domain 2  score: 83.0 bits;  conditional E-value: 5.3e-27
                 -HHHHHHCHCCS-HHHHHHHHHHS-HHHHHHHHCTS-CCCCCHHHHCS-HHHHHHHHCCS-HHHHHHHHCCCHHHHHHHHHHCS-HHHHHHHHHHCTS- CS
      MgtE_N   2 hpadiaelleelpeeeraallrllpkeeaaevleeldedlqeeliealsdeelaelleeldsDdaadlleelpeekveellsaldeeereeieellsYp 100
                 +p d+a++le+lp++ r al+ l+p+++++evl e +e++  +li+++sd el ++++ ld D+++ ll++lp + + +ll++l++e+r++i+++++Y 
  CTQ29116.1  63 PPPDLADALEALPYDARTALWCLVPDDKRGEVLLEASENVWGDLIDKMSDPELLQAMQPLDIDEQVYLLQHLPRNLTGRLLATLPAEKRARIRQIMRYA 161
                 799***********************************************************************************************9 PP

                 TT CS
      MgtE_N 101 ed 102
                 ++
  CTQ29116.1 162 DN 163
                 85 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.17
                 CCHHHHCS-HHHHHHHHCCS-HHHHHHHHCCCHHHHHH CS
      MgtE_N  42 qeeliealsdeelaelleeldsDdaadlleelpeekve 79 
                 +++l++a   +   +l+  l+ D+++d++ e  +++  
  CTQ29116.1 255 RDDLLSAAVIDADGKLIGRLTIDEIVDVVYEETDNDLR 292
                 5666666666777789999********96655555444 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.9e-05       0.1       1      44 [.     165     213 ..     165     223 .. 0.77
   2 !   24.9   0.3   5.5e-09     2e-05       1      55 [.     229     283 ..     229     285 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.9e-05
                 HHHHSBSSCEEEETTSBHHHHHHHHHH.....HTSSEEEEEETTTBEE.E CS
         CBS   1 Vgdimtrdvvtvppdttleealelmre.....kgvsrlPVVdedgklv.G 44 
                 Vg+im  +v+tv+p++tl+ + + +r+     ++ + l+V+   +kl+ G
  CTQ29116.1 165 VGSIMEFEVITVRPEATLAAVQRYLRRlgkmpENTDKLFVT-TRNKLLlG 213
                 899**********************8755555557899888.46665436 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 5.5e-09
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHT.SSEEEEEETTTBEEEEEEHHHHHHHH CS
         CBS   1 Vgdimtrdvvtvppdttleealelmrekg.vsrlPVVdedgklvGivtlrDllral 55 
                 Vg++m  d+vt+ p +  e++++++++ + +s+  V+d dgkl+G +t   +++++
  CTQ29116.1 229 VGEVMEGDPVTFQPHEEAEKVARTFERDDlLSAA-VIDADGKLIGRLTIDEIVDVV 283
                 89***********************666688888.***************999875 PP

>> DUF3659  Protein of unknown function (DUF3659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.19   6.7e+02      10      34 ..      90     117 ..      89     129 .. 0.72
   2 ?    3.6   0.0     0.017        61      15      31 ..     222     238 ..     218     244 .. 0.87
   3 ?    5.2   0.1    0.0057        20      14      34 ..     263     283 ..     260     300 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.19
     DUF3659  10 kaGevvd.eeGnvvGrvveG..dlkkLa 34 
                 k Gev+  ++ nv G +++   d++ L+
  CTQ29116.1  90 KRGEVLLeASENVWGDLIDKmsDPELLQ 117
                 7899985489999999999665777665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.017
     DUF3659  15 vdeeGnvvGrvveGdlk 31 
                 ++++ + vG+v eGd+ 
  CTQ29116.1 222 LNDAQKRVGEVMEGDPV 238
                 688999*********95 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0057
     DUF3659  14 vvdeeGnvvGrvveGdlkkLa 34 
                 v+d++G+ +Gr++ +++ +++
  CTQ29116.1 263 VIDADGKLIGRLTIDEIVDVV 283
                 899999999999877665555 PP

>> IreB  IreB regulatory phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.44      36      72 ..     226     262 ..     216     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
        IreB  36 nQivGYllsgdptYitsyknARslirkleRdelleel 72 
                 +  vG ++ gdp     +++A ++ r +eRd+ll + 
  CTQ29116.1 226 QKRVGEVMEGDPVTFQPHEEAEKVARTFERDDLLSAA 262
                 556999***************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3629.18
//
Query:       CTQ29117.1  [L=547]
Description: fused multidrug transport subunits of ABC superfamily transporter: permease component/ATP-binding component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-27   94.5   0.0    1.4e-26   93.7   0.0    1.5  1  ABC_tran        ABC transporter
    1.2e-06   28.6   0.1      0.017   15.0   0.0    2.3  2  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    6.3e-06   25.8   0.6     0.0036   16.8   0.1    2.2  2  SMC_N           RecF/RecN/SMC N terminal domain
    0.00078   19.9   0.2     0.0018   18.7   0.2    1.7  1  AAA_16          AAA ATPase domain
     0.0016   18.2   7.2     0.0017   18.1   6.2    1.6  1  ABC_membrane    ABC transporter transmembrane region
     0.0027   17.5   0.1      0.036   13.8   0.1    2.0  2  AAA_15          AAA ATPase domain
     0.0045   16.7   0.4      0.016   14.9   0.4    1.9  1  AAA_29          P-loop containing region of AAA domain
     0.0061   15.4   0.0        1.4    7.6   0.0    2.2  2  ABC_ATPase      Predicted ATPase of the ABC class
  ------ inclusion threshold ------
      0.079   12.5   0.2       0.22   11.1   0.2    1.8  1  AAA_25          AAA domain
      0.081   12.8   0.2       0.26   11.2   0.1    1.9  2  Ploopntkinase3  P-loop Nucleotide Kinase3
       0.09   13.0   0.1        1.8    8.8   0.0    2.5  2  AAA_28          AAA domain
       0.22   12.0   0.1       0.39   11.2   0.1    1.3  1  AAA_23          AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.0   9.1e-30   1.4e-26       4     136 ..     342     477 ..     339     478 .. 0.85

  Alignments for each domain:
  == domain 1  score: 93.7 bits;  conditional E-value: 9.1e-30
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTC...HHHHHHHSTTGGTTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvrenesdee...iekalsklglkelkd 99 
                 ++l+lk+ge+v ++G nG+GKStL++ll+gl++p +G+il+dg++l  ++ e++rk ++ ++ +  lf++l ++ + ++++   ++++l++l++ +   
  CTQ29117.1 342 LNLTLKRGELVFLIGGNGSGKSTLAMLLTGLYQPISGQILVDGQPLAAERPEEYRKLFSAVFTDVWLFDRL-LGPQGEEADpalVATWLERLQMAH--- 436
                 89*********************************************************************.666655555223666666666666... PP

                 BGESTTS....GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 100 tvvkssp....ssLSgGqkqrvalarallkkpkllllDEpt 136
                 + + +++      LS+Gqk+rval  al++ ++++llDE  
  CTQ29117.1 437 KLQLENGkiadLRLSKGQKKRVALLLALAESRDIILLDEWA 477
                 333333334569***************************86 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-05     0.017       2      24 ..     352     374 ..     351     398 .. 0.82
   2 !   11.3   0.0   0.00015      0.22     237     299 ..     450     510 ..     434     512 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
      AAA_21   2 nvliGpNgsGKSnLLdaldllar 24 
                  +liG NgsGKS+L  +l +l +
  CTQ29117.1 352 VFLIGGNGSGKSTLAMLLTGLYQ 374
                 68***************999965 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00015
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSp 299
                 lS G+k+  all+al++ +   +++l+DE  +  +P++ r+++++l  l +  g  v++ +H+ 
  CTQ29117.1 450 LSKGQKKRVALLLALAESR---DIILLDEWAADQDPHFRREFYQVLLPLMQqMGKTVFAISHDD 510
                 59****999********99...9********************99955555567899***9986 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0022       3.4      26      40 ..     351     365 ..     342     369 .. 0.86
   2 !   16.8   0.1   2.4e-06    0.0036     126     213 ..     439     524 ..     426     529 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0022
                 EEEEEESTTSSHHHH CS
                 xxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnl 40 
                 + +++G NGSGKs l
  CTQ29117.1 351 LVFLIGGNGSGKSTL 365
                 6799*********87 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 2.4e-06
                 HHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 126 llesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemlekadklvgvtk 213
                 +le+ +i    LS G+k+   +aLl+A+ + +   + llDe +a  D + ++++ ++l    ++    ++ is++++ +++ad+l+ ++ 
  CTQ29117.1 439 QLENGKIADLRLSKGQKKR--VALLLALAESRD--IILLDEWAADQDPHFRREFYQVLLPLMQQmgKTVFAISHDDHYFQHADRLLEMRA 524
                 57788888889******96..567777777665..899******************99966665337899***************98865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   1.2e-06    0.0018      23     142 ..     348     474 ..     341     540 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.2e-06
      AAA_16  23 rpelvllsGesGvGKsslv...rellralekdggiflrgkcdqlesaipy....sa.laqalareellrqlldeaesaeleawrekleeala......a 107
                 r+elv+l+G  G+GKs+l+   + l+++++++  i++ g+    e+  +y    sa ++++  +++ll   ++ea+ a+++ w e+l+ a +       
  CTQ29117.1 348 RGELVFLIGGNGSGKSTLAmllTGLYQPISGQ--ILVDGQPLAAERPEEYrklfSAvFTDVWLFDRLLGPQGEEADPALVATWLERLQMAHKlqlengK 444
                 5699***************3334444566665..3344444444444444455666699999999999999999***************9996665553 PP

      AAA_16 108 vpelagaeasrllellkrll.allsrderplvlvlD 142
                 +++l+ ++      +  +ll al+++ +   +++lD
  CTQ29117.1 445 IADLRLSKG---QKKRVALLlALAES-R--DIILLD 474
                 333333222...11111111122232.2..255555 PP

>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   6.2   1.1e-06    0.0017      47     187 ..      54     193 ..      16     257 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-06
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHH CS
  ABC_membrane  47 llllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkl 143
                   +l+l+ +  +++l+++  l+ +g + + rlr +++k+il   ++  ++  + +ll+ lt+d++++  +   +l  ++q +++ +g+ +++ +l+ k+
    CTQ29117.1  54 FLGLLGLLMAVTLGSQLALTTLGHHFVYRLRGEFVKRILDTQIEQVEKIGSASLLAGLTSDIRNIT-IAFVRLPELVQGIILTFGSAAYLAWLSGKM 149
                   55566666666778888889********************************************96.55667888999999999999999999999* PP

                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane 144 tlvllailpliilvsaviakilkklkkkeqkavakassvaeEsl 187
                   +lv+   + l i+  +v+ +++ k      ++ +k++   + +l
    CTQ29117.1 150 MLVTALWMALTIWGGFVLVSRVYKHMASLRETEDKLYHDYQTVL 193
                   **********9999998877665555555555555554444444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   2.4e-05     0.036      23      45 ..     350     371 ..     342     399 .. 0.85
   2 ?    1.7   0.0      0.11   1.7e+02     295     367 ..     448     511 ..     387     513 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.4e-05
      AAA_15  23 eeltvliGkNnsGKSsilealdl 45 
                 e l +liG N+sGKS+++++l  
  CTQ29117.1 350 E-LVFLIGGNGSGKSTLAMLLTG 371
                 3.99***************9965 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.11
      AAA_15 295 nknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHSph 367
                  + + G++  + l+l  + ae +       +i+l++E  a + p + +++++ l+ l ++  + v+  +H +h
  CTQ29117.1 448 LRLSKGQKKRVALLL--ALAESR-------DIILLDEWAADQDPHFRREFYQVLLPLMQQMGKTVFAISHDDH 511
                 556666666665555..455556.......77****************************9999999999988 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4   1.1e-05     0.016      18      38 ..     345     365 ..     339     372 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
      AAA_29  18 eidlkgatlltGpsGsGKSTl 38 
                 ++++ + ++l+G +GsGKSTl
  CTQ29117.1 345 TLKRGELVFLIGGNGSGKSTL 365
                 556555999***********9 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00096       1.4     227     274 ..     328     378 ..     310     387 .. 0.79
   2 !    5.6   0.0     0.004       5.9     378     431 ..     490     542 ..     483     547 .] 0.80

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00096
                 EEEEETTTEEEEE...EEE-SS.EEEEEE-TTSSHHHHHHHHHHCCSEE-TT CS
  ABC_ATPase 227 veielpngkkvsG...mgipkG.vtlIvGggfhGKsTLLeAlekGvynhvpg 274
                 v+++ p ++   G   + +++G ++ ++Gg+  GKsTL   l +G y+ + g
  CTQ29117.1 328 VTFHYPDQRFAVGplnLTLKRGeLVFLIGGNGSGKSTLAM-LLTGLYQPISG 378
                 7788888777777666899****999999999*****965.55677776665 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.004
                 HCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE-HHHHHHHHHCHT CS
  ABC_ATPase 378 drvrelykklgvstilvvggsgdyldvAdtvilmeeykpkdvtekakeiaeela 431
                 + +  l++++g +++ + +  ++y+++Ad+ + m++ +  ++t + +e a++ a
  CTQ29117.1 490 QVLLPLMQQMGKTVFAI-SHDDHYFQHADRLLEMRAGQLAELTGEEREQASRDA 542
                 55666788888766655.67899********************99998887755 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00015      0.22      29      53 ..     345     369 ..     314     450 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
      AAA_25  29 llpagelallaGapgtGKttlaldl 53 
                  l +gel+ l+G  g+GK+tla+ l
  CTQ29117.1 345 TLKRGELVFLIGGNGSGKSTLAMLL 369
                 5789******************977 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.2   4.8e+03     103     118 ..     260     275 ..     254     278 .. 0.85
   2 ?   11.2   0.1   0.00017      0.26       4      28 ..     350     374 ..     347     385 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.2
  Ploopntkinase3 103 ldaaleaGyevtlall 118
                      d+a++a y +tl +l
      CTQ29117.1 260 ADTAVAATYSLTLLFL 275
                     699********99887 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00017
  Ploopntkinase3   4 rliylvGqPGaGkstlmaeltkgfd 28 
                      l++l+G  G+Gkstl   lt  ++
      CTQ29117.1 350 ELVFLIGGNGSGKSTLAMLLTGLYQ 374
                     589*************999998876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0012       1.8       2      20 ..     352     370 ..     351     397 .. 0.88
   2 ?    1.3   0.0      0.24   3.6e+02     104     156 ..     453     507 ..     423     512 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0012
      AAA_28   2 ivitGgestGKTtlleaLa 20 
                 + ++Gg ++GK+tl+  L+
  CTQ29117.1 352 VFLIGGNGSGKSTLAMLLT 370
                 789***********98876 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.24
      AAA_28 104 arekrydlvfllppapei.dddgeR.redleereaiderlrealrelgipviivp 156
                  ++kr +l + l+++ +i   d++  ++d++ r++++++l+ +++++g  v  ++
  CTQ29117.1 453 GQKKRVALLLALAESRDIiLLDEWAaDQDPHFRREFYQVLLPLMQQMGKTVFAIS 507
                 55677778788887776665566653689999***************99998884 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00026      0.39      20      39 ..     350     369 ..     335     377 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
      AAA_23  20 gltlItGpNGaGKTTildAi 39 
                  l+ ++G NG+GK+T+   +
  CTQ29117.1 350 ELVFLIGGNGSGKSTLAMLL 369
                 588999*********97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 3684.19
//
Query:       CTQ29118.1  [L=217]
Description: oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-53  181.7   0.0    1.9e-53  181.6   0.0    1.0  1  2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> 2OG-FeII_Oxy_2  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.6   0.0   1.1e-57   1.9e-53       3     196 .]      20     210 ..      18     210 .. 0.95

  Alignments for each domain:
  == domain 1  score: 181.6 bits;  conditional E-value: 1.1e-57
  2OG-FeII_Oxy_2   3 llipnflsaee..aaellrelleegpfrqptilggkrvsvqqtllgplgwatdgpgyrysekesvdakplspfpeallrlverlvkaagpegwsp 95 
                     +++++f  +++    ++++ ++++ pfrq+ ++gg ++sv++t++g+lgw+td +gy y ++++v++++++p+p+++ +l+ ++++a g++++sp
      CTQ29118.1  20 VVLRRFARERApaLLQAIADVASQSPFRQMVTPGGYTMSVAMTNCGALGWTTDRHGYLYAPVDPVTDQTWPPMPAVFHELALAAAAAGGYPEFSP 114
                     56666765544226778888889***************************************************************999****** PP

  2OG-FeII_Oxy_2  96 naalvnfYrdgariglHqDkeesaleapivSlSLGasatfrfgkesreeeiiailLesGdllvmggesrkayHgvprikkdtapeleleelrtrR 190
                     +a+l+n+Y +ga+++lHqDk+e++l+apivS+SLG +a+f+fg+ +r+++ +++lLe+Gd++v+ggesr  yHg+++ k + +pe     ++ +R
      CTQ29118.1 115 DACLINRYCPGAKLSLHQDKDEQDLRAPIVSVSLGLPAIFQFGGLQRSDPLQRLLLEHGDVVVWGGESRLFYHGIQPLKAGHHPE-----TGDCR 204
                     *************************************************************************************.....9**** PP

  2OG-FeII_Oxy_2 191 inlTfR 196
                      nlTfR
      CTQ29118.1 205 YNLTFR 210
                     *****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1745.39
//
Query:       CTQ29119.1  [L=354]
Description: fused DNA-binding transcriptional dual regulator; O6-methylguanine-DNA methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-31  106.3  10.4    1.4e-30  105.1  10.4    1.7  1  Ada_Zn_binding   Metal binding domain of Ada
      5e-30  103.5   1.0      5e-30  103.5   1.0    2.2  2  DNA_binding_1    6-O-methylguanine DNA methyltransferase, DNA
    2.9e-19   68.7   0.0    1.2e-10   41.2   0.0    3.2  4  HTH_AraC         Bacterial regulatory helix-turn-helix protei
      1e-18   67.4   0.7    2.7e-18   66.0   0.7    1.8  1  HTH_18           Helix-turn-helix domain
    1.2e-05   26.0   0.0    2.1e-05   25.2   0.0    1.5  1  Methyltransf_1N  6-O-methylguanine DNA methyltransferase, rib
  ------ inclusion threshold ------
       0.17   11.9   0.0        5.2    7.1   0.0    2.8  3  HTH_15           Helix-turn-helix domain of alkylmercury lyas


Domain annotation for each model (and alignments):
>> Ada_Zn_binding  Metal binding domain of Ada
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1  10.4   4.6e-34   1.4e-30       2      65 .]      12      75 ..      11      75 .. 0.99

  Alignments for each domain:
  == domain 1  score: 105.1 bits;  conditional E-value: 4.6e-34
                    HHHHHHHTSTTCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEEESSHHHHHHTT-EEETTTTTS CS
  Ada_Zn_binding  2 rwqavlardaradgsFvyavkttgiyCrpsCparlPkrenveFfdtaaeAeaagfrpCkrcrPd 65
                    rwqav +rd+radg+Fv+av ttgi+CrpsC++r+++renv+Ff+++a+A aagfrpCkrc+Pd
      CTQ29119.1 12 RWQAVCERDTRADGQFVFAVLTTGICCRPSCRSRRARRENVRFFADVAAAVAAGFRPCKRCQPD 75
                    9**************************************************************7 PP

>> DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.46   1.4e+03      52      67 ..     116     131 ..      52     146 .. 0.54
   2 !  103.5   1.0   1.7e-33     5e-30       1      79 [.     270     348 ..     270     350 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.46
                    GGGEEBTTSBCCTTTT CS
  DNA_binding_1  52 cHRVvgadgklggyag 67 
                     HR  ++   ++++a+
     CTQ29119.1 116 FHRLFKSVTGMTPKAW 131
                    4566666666666644 PP

  == domain 2  score: 103.5 bits;  conditional E-value: 1.7e-33
                    HHHHHHHHHHTTS-TT-BEEHHHHHHHTT.TSCHHHHHHHHHTSSBTTTSGGGGEEBTTSBCCTTTTCHHHHHHHHHHT CS
  DNA_binding_1   1 afqqrVwellrqIpyGkvttYgeiAkllgkpkaaraVgqalaanplailvPcHRVvgadgklggyagglerkralLeaE 79 
                    afq +Vw++lrqIp G++ +Y ++A+++g+p+a+raV++a+aan la++vPcHRVv++dg+l+gy +g++rk++lL++E
     CTQ29119.1 270 AFQLQVWQALRQIPVGETRSYRQVAEHIGQPRAVRAVAGACAANSLAVIVPCHRVVREDGALSGYCWGTARKAQLLARE 348
                    69***************************************************************************99 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         2   5.8e+03       6      19 ..      79      92 ..      76      93 .. 0.76
   2 !   41.2   0.0   3.9e-14   1.2e-10       8      42 .]      99     133 ..      94     133 .. 0.93
   3 !   23.7   0.0   1.2e-08   3.6e-05       1      42 []     140     182 ..     140     182 .. 0.93
   4 ?   -2.1   0.0       1.5   4.5e+03       2      18 ..     294     310 ..     293     314 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2
                SCT--HHHHHHHTT CS
    HTH_AraC  6 stnltiediAdelg 19
                 +  +++ +A+++ 
  CTQ29119.1 79 PQQQRVDKVAQACR 92
                56678999**9995 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 3.9e-14
                 T--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   8 nltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 +lt+e +A +l +S+++F+rlFk++tGmtP+++ +
  CTQ29119.1  99 PLTLEALAGQLAMSPFHFHRLFKSVTGMTPKAWQQ 133
                 59*******************************75 PP

  == domain 3  score: 23.7 bits;  conditional E-value: 1.2e-08
                 HHCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 Lre l +++ +++ A ++gf ++s ++r+  +++Gmt sq+r+
  CTQ29119.1 140 LREALEQGIPVTRAALAAGFpDSSSYYRQADAALGMTASQFRR 182
                 5666788999*******************************96 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.5
                 HCCCSCT--HHHHHHHT CS
    HTH_AraC   2 renlstnltiediAdel 18 
                 +e++ ++  ++ +A ++
  CTQ29119.1 294 AEHIGQPRAVRAVAGAC 310
                 58999999999999988 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.7   9.1e-22   2.7e-18       1      80 [.     105     182 ..     105     183 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 9.1e-22
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 la +l++s+ +++rlfk+v+g+tpk++ ++ R +r r++L e +g +v+++Ala+GF d s+ +r   +++g+t s++rr
  CTQ29119.1 105 LAGQLAMSPFHFHRLFKSVTGMTPKAWQQAWRAQRLREAL-E-QGIPVTRAALAAGFPDSSSYYRQADAALGMTASQFRR 182
                 799*************************************.7.9***********************************8 PP

>> Methyltransf_1N  6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   7.1e-09   2.1e-05       3      61 ..     190     248 ..     188     266 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 7.1e-09
                      EEEEEEETTEEEEEEEETTCEEEEEEEC-HHHCCHHHCCCTTTSCCHCCHHHHHHHHHH CS
  Methyltransf_1N   3 yytlidsplgrlllagdEkgllaidlldkdtselkelpkllkqdeelpalaelkqalee 61 
                       +t+ d+ lgr+l+a +E+g +a+ ++d+d+++l  l + ++ +e+   +  + q+  e
       CTQ29119.1 190 TWTTGDCALGRCLVAQSERGVCAVLPGDNDAALLDDLRRRFPNAELREGDPDFCQQMAE 248
                      699*****************************888888888888855555555555555 PP

>> HTH_15  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.12   3.7e+02      28      47 ..      92     111 ..      83     113 .. 0.88
   2 ?    7.1   0.0    0.0017       5.2      18      44 ..     132     158 ..     116     176 .. 0.82
   3 ?   -3.0   0.0       2.5   7.5e+03      29      47 ..     234     252 ..     233     256 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.12
      HTH_15  28 rlLakGepVtveeLAaatgr 47 
                 rlL + +p t+e LA++++ 
  CTQ29119.1  92 RLLEQDAPLTLEALAGQLAM 111
                 7999999********99875 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0017
      HTH_15  18 ssaellrpLlrlLakGepVtveeLAaa 44 
                 ++a+ +  L + L +G pVt++ LAa 
  CTQ29119.1 132 QQAWRAQRLREALEQGIPVTRAALAAG 158
                 57788889999**************85 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.5
      HTH_15  29 lLakGepVtveeLAaatgr 47 
                 +L +G+p   +++A++ + 
  CTQ29119.1 234 ELREGDPDFCQQMAEIFAH 252
                 5778899888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2914.04
//
Query:       CTQ29120.1  [L=350]
Description: putative thiamine biosynthesis lipoprotein; defective assembly or repair of ThiH Fe-S cluster [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-78  262.7   0.1    4.2e-78  262.4   0.1    1.0  1  ApbE             ApbE family
  ------ inclusion threshold ------
      0.027   14.1   0.0      0.095   12.3   0.0    1.9  2  Transglut_core2  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> ApbE  ApbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.4   0.1   4.7e-82   4.2e-78       1     257 [.      41     324 ..      41     325 .. 0.92

  Alignments for each domain:
  == domain 1  score: 262.4 bits;  conditional E-value: 4.7e-82
                 TTEEEEEEEE.........HHHHHHHHHHHHHHHC-SS-TTSHHHHHHCT.S.S-EEE-HHHHHHHHHHHHHHHHTTTSS-TTTHHHHHHHCTTSGG.. CS
        ApbE   1 mgttvsitlyg........leaaieaelerlekllsryrpdSelsrlNra.k.kevkvspelaellkaaleiseltdgafdptvgplvklwgfgeeka. 88 
                 mgt +++++ g        l+a+++a+l++ ++lls++++dS l+r+N+a + ++ +vs+ +a++++ +l+i ++t+ga+d+tvgplv+lwgfg++k+ 
  CTQ29120.1  41 MGTFWRVSVIGvdeakaqaLRAKVQAQLDADDRLLSTWKNDSALMRFNHAaTtDPWPVSEAMADIVTLSLRIGAKTHGAMDITVGPLVNLWGFGPDKQp 139
                 9*******9734456655666***************************8875488****************************************9554 PP

                 .----HHHHHHHHTT.-GGGEEE........EESTT..-----TTTHHHHHHHHHHHHHHH.TT-EEEEEETTEEEEEC..-ECT-EEEEEE-TT.S.. CS
        ApbE  89 .rvpsaeeidaalalvgykkiel........lakkgpgmkLDlggiaKGyavdrvaellka.giksalvnlGGdiralG..pdgkpwrvgiedPr.a.. 172
                  + p+a++i+aa+a++g +++++        l+k+ p++ +Dl+ +++Gya+d +a+l+++ gi+++lv++GG ++  G   +gkpwrv+i++P+ +  
  CTQ29120.1 140 vTTPDAKAIAAAKARTGLQHLQVinqsgrqfLQKDIPDLFVDLSTVGEGYAADHLARLMEQeGISRYLVSVGGALVSRGmnGEGKPWRVAIQKPTdRen 238
                 777******************99999*****************************************************987789**********6257 PP

                 SEEEEEEESSSEEEEEETTSSEEE..TEEEES-B-TTTSSB---SECEEEEEESC.HHHHHHHHHHHHHHHHHHHHHHCCGGGTCTEE CS
        ApbE 173 ellavlslsddavaTSGdyeryfe..gkryhHiidprtgyPaesglasvtViads.alADalaTalfvlgeekalellekkeegveal 257
                 +++a++++++ +++TSG+y++y+e  gkr++H+idp+tg+P++++l+svtVia++ ++AD++ T l+vlg+eka+++++++  +++++
  CTQ29120.1 239 AVQAIVDINGHGISTSGSYRNYYEldGKRISHVIDPQTGQPITHKLVSVTVIAPTaLEADGWDTGLMVLGPEKAQQVVREE--RLAVY 324
                 8999*****88************888***************************866**********************964..56665 PP

>> Transglut_core2  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.21   1.9e+03     123     152 ..      57      86 ..      48      88 .. 0.75
   2 ?   12.3   0.0   1.1e-05     0.095      21      87 ..     233     299 ..     168     307 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.21
  Transglut_core2 123 eellraalgaeaeltreflapasnrdvltR 152
                      ++ lra  +a++++++++l   +n + l R
       CTQ29120.1  57 AQALRAKVQAQLDADDRLLSTWKNDSALMR 86 
                      667778888888889999998888888877 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.1e-05
  Transglut_core2  21 eraaaekleaLnellyeelgFagneddyydprnslldqVLerrrGiPislsvvylevArrlglpleg 87 
                      +++ ++ ++a+ ++ ++    +g+ ++yy+++   +++V++  +G Pi+  +v ++v +   l+++g
       CTQ29120.1 233 PTDRENAVQAIVDINGHGISTSGSYRNYYELDGKRISHVIDPQTGQPITHKLVSVTVIAPTALEADG 299
                      4556667888888888888999***************************999999999888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 3008.39
//
Query:       CTQ29121.1  [L=373]
Description: outer membrane porin protein C [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.1e-154  512.5  29.4   6.9e-154  512.3  29.4    1.0  1  Porin_1   Gram-negative porin


Domain annotation for each model (and alignments):
>> Porin_1  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  512.3  29.4  3.9e-158  6.9e-154       1     340 []      27     373 .]      27     373 .] 0.98

  Alignments for each domain:
  == domain 1  score: 512.3 bits;  conditional E-value: 3.9e-158
                 CTTEEEEEEEEEEEEEEEESTTSTCEEEEEEEEEEEEEEESSSSEEEEEEEEEEEESSSBTTCTTTCEEEEEEEEEEETTTEEEEEEEEE-TTHHHHCT CS
     Porin_1   1 KdgnkldlygkvtklhyfsdeksedgddtyariGfKGetqindqLtgygqwEyevkvngtegesaqsktrlaFaGLkfgevGsldyGrnygvvydveaw 99 
                 Kdgnkldlygk+++lhyfsd+ks dgd+ty+r+G+KGetqindqLtgygqwEy+v++n+te++s+q++trlaFaGLkfg++Gs+dyGrnygvvydv++w
  CTQ29121.1  27 KDGNKLDLYGKIDGLHYFSDDKSVDGDQTYMRVGVKGETQINDQLTGYGQWEYNVQANNTESSSDQAWTRLAFAGLKFGDAGSFDYGRNYGVVYDVTSW 125
                 9************************************************************************************************** PP

                 TTTSSSSSSCTSSCTTSTTTSEECCEEEEEESCCCCTSTTEEEEEEEE--B-TS............SSTTT-BESEEEEEEEEEETT..EEEEEEEEEE CS
     Porin_1 100 tdvlpefggdtvaqtdnfmtkrangvatYrntdFfGlvdglnfalqyqgknedts.......tnn.rnlkksngdgygvslsYeveGfalsvagayars 190
                 tdvlpefggdt+  +dnf+++rangvatYrn+dFfGlvdglnfalqyqgkn ++s       tnn r++ k+ngdgyg+sl+Y++  +++s ++ay++s
  CTQ29121.1 126 TDVLPEFGGDTY-GSDNFLQSRANGVATYRNSDFFGLVDGLNFALQYQGKNGSPSgegalspTNNgRTALKQNGDGYGTSLTYDIY-DGISAGFAYSNS 222
                 ***********9.****************************************99*******7777*******************9.79********** PP

                 EE-CHHC......TSSCSSTSEEEEEEEEEEEEETTEEEEEEEEEECSESEEEEEEEESEEEEEEEEEEE-BTTSEEEEEEEEEEEEECETT.....ST CS
     Porin_1 191 drtakqklelkseakllgngkkaevwalglkYdanniylaaaYaetrnatlvgasgianktqnlevvaqyqfdfGlrPsiaYvqskgkdleg.....kk 284
                 +r ++q++     + +lg+g++ae+++ glkYdanniyla++Y++t+nat++g+ g+a k+qn+evvaqyqfdfGlrPs+aY+qskgk+l++     ++
  CTQ29121.1 223 KRLGDQNS-----KLALGRGDNAETYTGGLKYDANNIYLATQYTQTYNATRAGSLGFADKAQNFEVVAQYQFDFGLRPSVAYLQSKGKNLQNnftgvNY 316
                 ******95.....67889*************************************************************************9999999* PP

                 CCEEEEEEEEEEEEEECCSSEEEEEEEEEE-S-TTSSC.CTSSTSC-EEEEEEEEEE CS
     Porin_1 285 gdndlvkyvdvGatYyFnKnmsayVdykinlldkdddk.elgistddivavglvyqF 340
                 gd+d++kyvdvGatYyFnKnms+yVdykinlld++d + ++gistdd+va+glvyqF
  CTQ29121.1 317 GDQDILKYVDVGATYYFNKNMSTYVDYKINLLDENDFTrKAGISTDDVVALGLVYQF 373
                 ************************************6589****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 3260.07
//
Query:       CTQ29122.1  [L=885]
Description: phosphotransfer intermediate protein in two-component regulatory system with RcsBC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-40  137.0   0.1    6.9e-40  135.4   0.1    2.0  1  RcsD_ABL   RcsD-ABL domain
    4.6e-12   46.0   0.6    1.6e-11   44.3   0.0    2.4  2  Hpt        Hpt domain
    6.2e-08   33.1   0.0    1.5e-07   31.9   0.0    1.6  1  HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like A


Domain annotation for each model (and alignments):
>> RcsD_ABL  RcsD-ABL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.4   0.1   1.1e-43   6.9e-40       1     102 [.     683     784 ..     683     785 .. 0.99

  Alignments for each domain:
  == domain 1  score: 135.4 bits;  conditional E-value: 1.1e-43
    RcsD_ABL   1 eklLeditvllditseevrkivsrllenyGaelltkdernlsqeydilltDdpaklekstlLlsddetgveklkprrlrvNyNlsdalldAillLiEqq 99 
                 e+lL+d++vlld+ts+evr+iv+r+le++Ga+++t+d+r +sq +d++ltD+p++l++s+lLlsdde g++k++p +lrvN+N+s+a+++Ail+LiEqq
  CTQ29122.1 683 EHLLDDVIVLLDVTSSEVRRIVTRQLESWGASCITPDDRATSQAFDLYLTDNPSNLTASGLLLSDDEVGIRKIGPGQLRVNFNISTAMQEAILQLIEQQ 781
                 79************************************************************************************************* PP

    RcsD_ABL 100 lal 102
                 la+
  CTQ29122.1 782 LAE 784
                 987 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.3       2.3   1.3e+04      12      27 ..     773     788 ..     769     791 .. 0.69
   2 !   44.3   0.0   2.7e-15   1.6e-11       3      62 ..     806     866 ..     804     884 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.3
                 HHHHHHHHHHSCCHHH CS
         Hpt  12 elleqleqaldqedlq 27 
                   l+ +eq+l++e++q
  CTQ29122.1 773 AILQLIEQQLAEEAVQ 788
                 5577778888777766 PP

  == domain 2  score: 44.3 bits;  conditional E-value: 2.7e-15
                 HHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH.HC CS
         Hpt   3 lelfleeaeelleqleqaldqedlqelaraaHtLKGsagmlGltelaelahelEdlld.ra 62 
                 ++lf +++++++++l + ++++d+ +la++aH+LKG+ +ml l + ++l+++lE+l++ ++
  CTQ29122.1 806 YALFADTVPDDVQRLYTEIEAGDFAALAQTAHRLKGAFAMLNLIPGKQLCETLEHLIReKD 866
                 67899**************************************************997422 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   2.4e-11   1.5e-07       2     111 ..     562     673 ..     561     674 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 2.4e-11
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE...TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTS.TSSSHHHHHHHHHHHHTTTEEEEEE CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikase...ddlvisveDnGiGipkedlkklfekfsqddstkrgg.ggtGlGlsivkklvelmgGeiwves 96 
                 d + Lr+ +  l++ +v   t+ g+i++ + ++e   d+l++++ D+G G++ +++++++ ++ + +++++ + + + l + +++++++++gG+++++ 
  CTQ29122.1 562 DREALRRTLVLLIQYSVTT-TPIGKITLDVCQDEsasDRLTFRILDTGNGVSANEIDNMHFPYLN-ETQSDLYgKANALTFWLCDRMTRKLGGQLTIKA 658
                 6677777777777777775.666666666665446789*******************99999999.4444444277779******************99 PP

                 ETTTEEEEEEEEESS CS
   HATPase_c  97 epgrGttftftlple 111
                 ++  Gt++t++l+++
  CTQ29122.1 659 RESLGTRYTLHLKMP 673
                 9999********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (885 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 6230.86
//
Query:       CTQ29123.1  [L=216]
Description: DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-25   87.4   0.1    1.1e-24   86.7   0.1    1.3  1  Response_reg  Response regulator receiver domain
    6.9e-19   67.1   0.3    1.2e-18   66.4   0.3    1.4  1  GerE          Bacterial regulatory proteins, luxR family
    5.2e-05   22.8   0.3    0.00016   21.3   0.2    1.9  2  Sigma70_r4_2  Sigma-70, region 4
    7.2e-05   22.2   0.1    0.00016   21.1   0.1    1.6  1  Sigma70_r4    Sigma-70, region 4
    0.00077   19.2   0.0     0.0017   18.1   0.0    1.5  1  HTH_38        Helix-turn-helix domain
     0.0014   18.4   0.0     0.0039   16.9   0.0    1.7  2  HTH_23        Homeodomain-like domain
  ------ inclusion threshold ------
       0.16   12.0   0.0       0.59   10.2   0.0    1.8  2  HTH_29        Winged helix-turn helix
       0.19   11.7   0.0       0.35   10.8   0.0    1.4  1  TerB          Tellurite resistance protein TerB


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.1     5e-28   1.1e-24       1     111 [.       6     120 ..       6     121 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 5e-28
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSS...SEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCT CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpg...mdGlellkeireedpelpviiltahseeedavealkag 93 
                   v+i+dD+p+v+ ++r+ le  e++++v+e+ed+++++++l + + +++++D++mpg    dG++l+k i+++ p+l +i+lt++++ + + ++l+++
    CTQ29123.1   6 VIIADDHPIVLFGIRKSLEqIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGdkyGDGITLIKYIKRHFPDLSIIVLTMNNNPAILSAVLDLD 102
                   89*****************77***********************************5555************************************* PP

                   ESEEEESSG-HHHHHHHH CS
  Response_reg  94 addflsKpfdpeeLlkal 111
                   +++++ K+ +p++L kal
    CTQ29123.1 103 IEGIVLKQGAPTDLPKAL 120
                   **************9987 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.3   5.2e-22   1.2e-18       2      56 ..     150     204 ..     149     205 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 5.2e-22
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                  Ls++E+evLrl+aeG+ ++eIA++ln S kT++++k+++m+KL+v+++++l ++
  CTQ29123.1 150 RLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNY 204
                 7*************************************************99887 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.7   3.7e+03       6      19 ..      40      53 ..      39      54 .. 0.81
   2 !   21.3   0.2     7e-08   0.00016      10      54 .]     150     193 ..     149     193 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.7
                  HHHTTS-HHHHHHH CS
  Sigma70_r4_2  6 ealaeLperqreif 19
                  ++++ Lp+ +  ++
    CTQ29123.1 40 ALINNLPKLDAHVL 53
                  58999**9998776 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 7e-08
                   TS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  10 eLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +L+++++e++ l + eg+   EIA++l+ s +t+ s+ + A+ kL
    CTQ29123.1 150 RLSPKESEVLRL-FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193
                   7***********.89*********************999999887 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1     7e-08   0.00016       4      48 ..     150     193 ..     149     194 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 7e-08
                 HS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   4 sLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 +L+++e evl+l f eg    EI+++l+ S  ++++ +k A++kL
  CTQ29123.1 150 RLSPKESEVLRL-FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193
                 7**********9.899999*************************9 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.5e-07    0.0017       3      38 ..     149     183 ..     148     183 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.5e-07
      HTH_38   3 khLsleeReeIerllaeGlslreIArrLgrspsTIs 38 
                 k+Ls+ e  e  rl aeG  + eIA++L+rs  TIs
  CTQ29123.1 149 KRLSPKES-EVLRLFAEGFLVTEIAKKLNRSIKTIS 183
                 79999999.7889**********************8 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.9   4.3e+03      13      27 ..     122     138 ..     118     144 .. 0.55
   2 !   16.9   0.0   1.8e-06    0.0039       9      35 ..     157     183 ..     154     189 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.9
      HTH_23  13 llae..GlsvreIAreL 27 
                 +l++  + +++ ++r+L
  CTQ29123.1 122 ALQKgkKFTPESVSRLL 138
                 44445566777777766 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.8e-06
      HTH_23   9 rillllaeGlsvreIAreLgvsrrTvy 35 
                 ++l+l+aeG  v+eIA++L++s  T++
  CTQ29123.1 157 EVLRLFAEGFLVTEIAKKLNRSIKTIS 183
                 689**********************97 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.3     3e+03      44      59 ..     137     153 ..     120     155 .. 0.64
   2 ?   10.2   0.0   0.00026      0.59       4      34 ..     158     187 ..     157     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.3
      HTH_29  44 lld.rrrsgrprnrlse 59 
                 ll+   +sg + +rls+
  CTQ29123.1 137 LLEkISASGYGDKRLSP 153
                 44433457777777776 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00026
      HTH_29   4 allllaeGvstvsqiAkllglsrrtvyrwlk 34 
                 +l+l aeG   v +iAk l+ s +t+   +k
  CTQ29123.1 158 VLRLFAEGFL-VTEIAKKLNRSIKTISSQKK 187
                 899******9.*************9987665 PP

>> TerB  Tellurite resistance protein TerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00016      0.35      92     135 ..     126     169 ..     109     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
        TerB  92 krklspeqrraliealweiAlADGeldeaEdavlrrvaelLgls 135
                 ++k++pe   +l+e + + ++ D +l+++E +vlr  ae + ++
  CTQ29123.1 126 GKKFTPESVSRLLEKISASGYGDKRLSPKESEVLRLFAEGFLVT 169
                 56799******************************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1624.38
//
Query:       CTQ29124.1  [L=946]
Description: hybrid sensory kinase in two-component regulatory system with RcsB and YojN [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-34  117.4   0.1    1.1e-33  115.1   0.0    2.3  2  RcsC          RcsC Alpha-Beta-Loop (ABL)
    1.7e-29  102.3   0.1    3.5e-29  101.2   0.1    1.6  1  Response_reg  Response regulator receiver domain
    5.8e-29  100.9   0.0    1.2e-28   99.8   0.0    1.6  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    1.8e-16   59.9   0.8    6.5e-16   58.1   0.0    2.5  2  HisKA         His Kinase A (phospho-acceptor) domain
  ------ inclusion threshold ------
      0.058   13.3   0.1       0.22   11.5   0.0    2.0  2  HATPase_c_5   GHKL domain
        0.1   12.9   0.2        4.3    7.7   0.0    2.9  3  OKR_DC_1_N    Orn/Lys/Arg decarboxylase, N-terminal domain


Domain annotation for each model (and alignments):
>> RcsC  RcsC Alpha-Beta-Loop (ABL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.4     4e+03      11      45 ..     386     421 ..     380     429 .. 0.68
   2 !  115.1   0.0   3.5e-37   1.1e-33       1      91 []     707     797 ..     707     797 .. 1.00

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.4
        RcsC  11 eeylqrlLsesgltvar.yeeqevseddvlitDepe 45 
                  +yl+ l +e   + ++   +q+v+  dvl + +++
  CTQ29124.1 386 HNYLNMLTHEDRQRLTQiICGQQVNFVDVLTSNHTN 421
                 455555555555556666899999999999988876 PP

  == domain 2  score: 115.1 bits;  conditional E-value: 3.5e-37
        RcsC   1 cwLairNasLeeylqrlLsesgltvaryeeqevseddvlitDepeaeaievravielseehigapqeiregeWlhstatlhelpalLerly 91 
                 cwLai+N+sL+ ++++lLs++gltv+r+++++++++dvl+tD+++ + +++ra++ ++++hig+pqe+++geWlhs++t+hel+ lL+r++
  CTQ29124.1 707 CWLAIHNTSLAMFVTSLLSYHGLTVRRHAGETPDAEDVLLTDDEALSGWQGRAMVIFCRRHIGIPQERSAGEWLHSVTTPHELLPLLGRIF 797
                 9****************************************************************************************97 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.1   1.2e-32   3.5e-29       1     111 [.     825     934 ..     825     935 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 1.2e-32
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l+vdD+p++r+ll+++l + gy ++ +a+dg +al+ l ++++d++l D+nmp+mdG++l+++ir+   +lpvi +ta++  e+++++l+ g+d +
    CTQ29124.1 825 ILVVDDHPINRRLLADQLGSLGY-QCVTANDGIDALNVLSKQHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSC 920
                   89*********************.99*********************************************************************** PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   lsKp++ + L++ l
    CTQ29124.1 921 LSKPVTLDVLKQTL 934
                   ********999876 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.0   4.1e-32   1.2e-28       1     110 [.     579     688 ..     579     690 .. 0.95

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 4.1e-32
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEET CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesep 98 
                 gd+ rL+q+isnl++Na+kf t++g+i ++++   d+l+isv+D+G Gip +++ +lf++f q   + +r+ +gtGlGl+i++kl+++m+G+i ve+ep
  CTQ29124.1 579 GDPMRLQQVISNLLSNAIKF-TDTGCIVLHVQCAGDYLQISVRDTGEGIPAKEVLRLFDPFFQvGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEP 676
                 799*****************.999999888886569***************************99999999*************9999*********** PP

                 TTEEEEEEEEES CS
   HATPase_c  99 grGttftftlpl 110
                 g G++ft+++pl
  CTQ29124.1 677 GMGSRFTIRIPL 688
                 *********997 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.1   6.2e+03      35      57 ..      43      65 ..      34      73 .. 0.55
   2 !   58.1   0.0   2.2e-19   6.5e-16       1      66 [.     467     531 ..     467     532 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.1
                SSCHHHHHHHHHHHHHHHHHHHH CS
       HisKA 35 eelkeyletiesearrldhlved 57
                e+ +e  + +  +a++ ++ +++
  CTQ29124.1 43 EREAEIHQELNLNADQAQRYIQR 65
                45555555555555555555544 PP

  == domain 2  score: 58.1 bits;  conditional E-value: 2.2e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 s++ fla+v+HELrtPL +i+gn+++L+ + +l+  + +++  + +++  l+++++d+Ld+s+ie+
  CTQ29124.1 467 SKSMFLATVSHELRTPLYGIIGNLDLLQTK-ALPKGVDRLVTAMNNSSSLLLKIISDILDFSKIES 531
                 6899***********************996.999******************************98 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3       2.4   7.2e+03      23      61 ..     393     431 ..     375     436 .. 0.66
   2 ?   11.5   0.0   7.2e-05      0.22       4      92 ..     582     677 ..     580     688 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.4
  HATPase_c_5  23 kieeekrfIrltvrekkksliisieNsyegekkklessk 61 
                  + e+++r  ++ + ++ +++ +  +N+++ ++  ++s+ 
   CTQ29124.1 393 THEDRQRLTQIICGQQVNFVDVLTSNHTNLQISFVHSRY 431
                  344578888888888888888888888888776666654 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.2e-05
  HATPase_c_5   4 ldlcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg..........ek..kklesskskkeehGiGlksireivkkykgnlsiea 89 
                  + l  +++nlL NAi   +     +  I l+v+   + l is+  + eg          +   +     +++ +  G+Gl   +++++  +g++++e+
   CTQ29124.1 582 MRLQQVISNLLSNAIKFTD-----TGCIVLHVQCAGDYLQISVRDTGEGipakevlrlfDPffQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVET 674
                  668899*********7554.....567*******************9998876555443113344445578999**********************99 PP

  HATPase_c_5  90 edg 92 
                  e g
   CTQ29124.1 675 EPG 677
                  976 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       3.6   1.1e+04      35      57 ..     433     457 ..     427     466 .. 0.58
   2 ?    1.7   0.0       0.1   3.1e+02      29      65 ..     591     627 ..     585     628 .. 0.84
   3 ?    7.7   0.0    0.0014       4.3       7      67 ..     836     898 ..     833     911 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.6
  OKR_DC_1_N  35 qnsriaavvlsvd..deaaelldei 57 
                 +++ + +v+++v+   +++e l+e+
  CTQ29124.1 433 NENVAICVLVDVSarVKMEESLQEM 457
                 5555678888888773333333333 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.1
  OKR_DC_1_N  29 llsvieqnsriaavvlsvddeaaelldeirernedlP 65 
                 lls + ++++ +++vl v+ +   l   +r+++e +P
  CTQ29124.1 591 LLSNAIKFTDTGCIVLHVQCAGDYLQISVRDTGEGIP 627
                 56667789**********9888778889999999999 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0014
  OKR_DC_1_N   7 relaealekegfevvgvtstdDllsvieqnsriaavvlsvd...deaaelldeirernedlPvF 67 
                 r la++l + g+++v++++  D+l+v+++  +i+ v+ +v+    +   l + ir+++ +lPv 
  CTQ29124.1 836 RLLADQLGSLGYQCVTANDGIDALNVLSK-QHIDIVLSDVNmpnMDGYRLTQRIRQLGLTLPVI 898
                 56999**********************99.6799999999999977888*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (946 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.41
# Mc/sec: 6879.20
//
Query:       CTQ29125.1  [L=877]
Description: DNA gyrase (type II topoisomerase), subunit A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.9e-153  511.4   0.0   2.4e-153  511.1   0.0    1.1  1  DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
    9.4e-82  268.3  12.0    5.2e-16   57.9   0.2    6.6  7  DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller


Domain annotation for each model (and alignments):
>> DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  511.1   0.0  2.6e-157  2.4e-153       1     425 [.      32     506 ..      32     507 .. 0.98

  Alignments for each domain:
  == domain 1  score: 511.1 bits;  conditional E-value: 2.6e-157
  DNA_topoisoIV   1 RaiPsvrDGlKPvqRriLyamfkl.lnldkkekKvaqlvGevlgkYhPHGdaslydaivrlaqdfvgniplldpqGnfGsildgdkdAaaRYietr 95 
                    Ra+P+vrDGlKPv+Rr+Lyam+ l ++ +k +kK+a++vG+v+gkYhPHGd+++yd+ivr+aq f++++ l+d+qGnfGsi dgd++Aa+RY+e+r
     CTQ29125.1  32 RALPDVRDGLKPVHRRVLYAMNVLgNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI-DGDSAAAMRYTEIR 126
                    9********************************************************************************.************** PP

  DNA_topoisoIV  96 LskiarellkeidketvdyqenyDgsekEPevlppiiPnlLvnGaeGIavGmatkipphnlkeiidaliallkgeea...ellelvlgPdfptggg 188
                    L+kia+el+++++ketvd+++nyDg+e  P+v+p++iPnlLvnGa+GIavGmat+ipphnl+e+i+ + a++++e++    l+ +++gPdfpt ++
     CTQ29125.1 127 LAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEVINGCLAYVDDEDIsieGLMAHIPGPDFPTAAI 222
                    ****************************************************************************999989************** PP

  DNA_topoisoIV 189 iigkeeikeayetgrGkikvrakveie.....e.ktivitElPigvntskliekieelvkkkkik.isdirdesdr.gvrivielkrgaseekvle 276
                    i g+ +i+eay+tgrGk+ +ra++e+e     + +ti++ E+P++vn+++lieki+elvk+k+++ is +rdesd+ g+rivie+kr+a  e+vl+
     CTQ29125.1 223 INGRRGIEEAYRTGRGKVYIRARAEVEvdaksGrETIIVHEIPYQVNKARLIEKIAELVKEKRVEgISALRDESDKdGMRIVIEVKRDAVGEVVLN 318
                    ***********************999999**945***************************************9999******************* PP

  DNA_topoisoIV 277 klykktkLessisvnnlvlfdkkpkylslkeilkeflevrlevyerrkeyllekleerleilegllkalnkidevievirkskkekkakkeLieel 372
                    +ly++t+L+ s+ +n+++l+ ++pk+++lk+i+ +f+++r+ev++rr+ ++l+k+++r++ile+l +al +id +ie+ir+  + ++ak++L+++ 
     CTQ29125.1 319 NLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQA 414
                    ***********************************************************************************************4 PP

  DNA_topoisoIV 373 se....................................eqaeyllemrlrrLtkeeveklekeieelekeikelekllak...lkklikeel 425
                     +                                    +qa+++l++rl++Lt +e+ekl +e++el ++i+el ++l +   l+++i+eel
     CTQ29125.1 415 WDlgnvaamleragddaarpewlepefgvrdgkyylteQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSadrLMEVIREEL 506
                    44466999******************************9***************************************99888889998887 PP

>> DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.85   7.6e+03      25      38 ..     234     247 ..     231     250 .. 0.74
   2 !   37.7   0.0   1.1e-13     1e-09       1      47 [.     538     584 ..     538     585 .. 0.93
   3 !   42.3   0.0   4.1e-15   3.6e-11       1      47 [.     588     637 ..     588     638 .. 0.97
   4 !   33.7   0.0     2e-12   1.8e-08       2      47 ..     645     688 ..     645     689 .. 0.94
   5 !   57.9   0.2   5.8e-20   5.2e-16       1      46 [.     692     737 ..     692     739 .. 0.97
   6 !   51.6   0.1   5.1e-18   4.6e-14       3      47 ..     744     789 ..     743     790 .. 0.96
   7 !   47.5   0.4     1e-16   9.1e-13       1      47 [.     793     839 ..     793     840 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.85
                    TTSCTEEGSETTTT CS
  DNA_gyraseA_C  25 RgakGvkgiklkeg 38 
                    R+++G+  i+ + +
     CTQ29125.1 234 RTGRGKVYIRARAE 247
                    78899988887766 PP

  == domain 2  score: 37.7 bits;  conditional E-value: 1.1e-13
                    SEEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEEE CS
  DNA_gyraseA_C   1 dellliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvlvv 47 
                    d +++ +++Gyvk  pl ++ +q+Rg+kG+ + ++ke+d++  +lv+
     CTQ29125.1 538 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVA 584
                    6799************************************9877775 PP

  == domain 3  score: 42.3 bits;  conditional E-value: 4.1e-15
                    SEEEEEETTSEEEEEEGGGS-BT-TTSCTEEGS...ETTTTSSEEEEEEE CS
  DNA_gyraseA_C   1 dellliTsnGyvkrfplselpeqgRgakGvkgi...klkegdklvsvlvv 47 
                    d +l+++s+G+ +++++++lpe +Rga+G +++    l+ +++++++l+v
     CTQ29125.1 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVnllPLEADERITAILPV 637
                    78**********************************************98 PP

  == domain 4  score: 33.7 bits;  conditional E-value: 2e-12
                    EEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEEE CS
  DNA_gyraseA_C   2 ellliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvlvv 47 
                    +++++T  G vk++ l e+++ + +  G+++++l+egd+l++v ++
     CTQ29125.1 645 NVFMATASGTVKKTALTEFSRPRSA--GIIAVNLNEGDELIGVDLT 688
                    699********************66..****************987 PP

  == domain 5  score: 57.9 bits;  conditional E-value: 5.8e-20
                    SEEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEE CS
  DNA_gyraseA_C   1 dellliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvlv 46 
                    de++l++ +G+v+rf+++ ++++gR+a+Gv+gikl e+d++vs+++
     CTQ29125.1 692 DEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAENDSVVSLII 737
                    89*****************************************986 PP

  == domain 6  score: 51.6 bits;  conditional E-value: 5.1e-18
                    EEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTT.SSEEEEEEE CS
  DNA_gyraseA_C   3 llliTsnGyvkrfplselpeqgRgakGvkgiklkeg.dklvsvlvv 47 
                    +l++T+nGy+kr+ ++e+p ++R+++Gv+ ik +e+ +++v+++ v
     CTQ29125.1 744 ILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERnGSVVGAVQV 789
                    89****************************************9877 PP

  == domain 7  score: 47.5 bits;  conditional E-value: 1e-16
                    SEEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSEEEEEEE CS
  DNA_gyraseA_C   1 dellliTsnGyvkrfplselpeqgRgakGvkgiklkegdklvsvlvv 47 
                    d +++iT++G  +r+++se++  gR+++Gv++i++ e++ +v++  v
     CTQ29125.1 793 DQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRV 839
                    78*****************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.40
# Mc/sec: 6579.62
//
Query:       CTQ29126.1  [L=242]
Description: bifunctional 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-23   82.4   0.0      4e-23   82.0   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    2.5e-22   79.3   0.1    5.1e-22   78.3   0.1    1.5  1  Methyltransf_11  Methyltransferase domain
    2.5e-19   69.8   0.1    3.9e-19   69.1   0.1    1.3  1  Methyltransf_25  Methyltransferase domain
    4.2e-18   65.6   0.0    5.3e-18   65.3   0.0    1.1  1  Methyltransf_31  Methyltransferase domain
    1.5e-15   57.8   0.0    2.3e-15   57.1   0.0    1.3  1  Methyltransf_12  Methyltransferase domain
    3.7e-11   42.8   0.0    4.6e-11   42.5   0.0    1.1  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    7.5e-10   38.5   0.0    9.5e-10   38.2   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
    2.1e-09   37.3   0.0    2.6e-09   37.0   0.0    1.1  1  NodS             Nodulation protein S (NodS)
    6.9e-07   29.0   0.0      1e-06   28.4   0.0    1.3  1  MTS              Methyltransferase small domain
    2.1e-06   27.4   0.0    2.9e-06   26.9   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    5.1e-05   22.4   0.1    6.4e-05   22.0   0.1    1.1  1  Methyltransf_9   Protein of unknown function (DUF1698)
    6.3e-05   22.6   0.0    9.2e-05   22.1   0.0    1.2  1  MetW             Methionine biosynthesis protein MetW
     0.0017   18.4   0.1     0.0023   17.9   0.1    1.3  1  Methyltransf_32  Methyltransferase domain
  ------ inclusion threshold ------
       0.02   14.2   0.2      0.062   12.6   0.2    1.7  1  GidB             rRNA small subunit methyltransferase G
      0.048   13.3   0.0       0.11   12.2   0.0    1.6  2  TPMT             Thiopurine S-methyltransferase (TPMT)
      0.049   12.7   0.0      0.094   11.8   0.0    1.4  1  DREV             DREV methyltransferase
      0.087   13.2   0.1        1.3    9.4   0.0    2.4  2  Sterol_MT_C      Sterol methyltransferase C-terminal
       0.11   12.4   0.0       0.18   11.8   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
       0.12   11.7   0.0       0.18   11.2   0.0    1.2  1  TehB             Tellurite resistance protein TehB


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   4.3e-26     4e-23      23     129 ..      57     170 ..      34     209 .. 0.81

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 4.3e-26
  Methyltransf_23  23 ggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae......kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrqiatllk 110
                      g++vLd+GcG Gil+e+++++g++vtg D+  e  + a+      +++    + + e+ aa+  +++d+++++e+lehvpdp ++++  a+l+k
       CTQ29126.1  57 GKKVLDVGCGGGILAESMAREGATVTGLDMGAEPLQVARlhalesGIQVDYVQETVEEHAAKHPQQYDVVTCMEMLEHVPDPQSVVHACARLVK 150
                      469***************************999999999*****844444444444578999999***************************** PP

  Methyltransf_23 111 pgGylllseplaslk.edrl 129
                      pgG +++s+++++ k ++++
       CTQ29126.1 151 PGGQVFFSTINRNGKaWLMA 170
                      ************98545554 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.1   5.4e-25   5.1e-22       1      96 []      61     157 ..      61     157 .. 0.95

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 5.4e-25
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkpgGl 93 
                      LdvGcG+G+lae +a+ ga+v+g+D+ +e l++a+ +a e+g++v++v++++e+      +++D+v++ e+l+hv+dp++++  +aR++kpgG 
       CTQ29126.1  61 LDVGCGGGILAESMAREGATVTGLDMGAEPLQVARLHALESGIQVDYVQETVEEHaAKHPQQYDVVTCMEMLEHVPDPQSVVHACARLVKPGGQ 154
                      8****************************************************97345559********************************9 PP

                      EEE CS
  Methyltransf_11  94 lvi 96 
                      +++
       CTQ29126.1 155 VFF 157
                      986 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.1   4.1e-22   3.9e-19       1      97 []      60     153 ..      60     153 .. 0.93

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 4.1e-22
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG.BSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaed.lpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      vLd+GcG G l++ +a+++  a+vtg+D+ +e l+ ar +a e+g++v++vq  +e+    + +++D+v+++ +l+h++d+  + +++ +ar++
       CTQ29126.1  60 VLDVGCGGGILAESMAREG--ATVTGLDMGAEPLQVARLHALESGIQVDYVQETVEEhAAKHPQQYDVVTCMEMLEHVPDP--QSVVHACARLV 149
                      9*****************5..**********************************773567999*******888***9965..59********* PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      kpgG
       CTQ29126.1 150 KPGG 153
                      ***9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   5.6e-21   5.3e-18       4     114 ..      57     177 ..      56     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 5.6e-21
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevlnaladpdkilee 96 
                      g++vlD+GCG G l+  +a+   ++a+v+G+D+ +e +++Ar +a + g++ v   q+ +ee + k+  ++++D++++ e l +++dp+++   
       CTQ29126.1  57 GKKVLDVGCGGGILAESMAR---EGATVTGLDMGAEPLQVARLHALESGIQ-VDYVQETVEEhAAKH--PQQYDVVTCMEMLEHVPDPQSVVHA 144
                      579****************4...589************************7.**********87754..799********************** PP

  Methyltransf_31  97 iervlkpggilliedpr...............l 114
                        r++kpgg +  ++++               +
       CTQ29126.1 145 CARLVKPGGQVFFSTINrngkawlmavvgaeyV 177
                      ****************97755554444433333 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   2.4e-18   2.3e-15       1      99 []      61     155 ..      61     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 2.4e-18
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg..ssfDlvvasnvlhhlkdirevldnirkl 92 
                      L++GcG G l++ ++++  ++++tg+D  ++ ++ a+ +  + +     +v++ ++ +++++ +  +++D+v++ + l+h++d+++v++ +++l
       CTQ29126.1  61 LDVGCGGGILAESMARE--GATVTGLDMGAEPLQVARLHALESGI----QVDYVQETVEEHAAKhpQQYDVVTCMEMLEHVPDPQSVVHACARL 148
                      8****************..**************888888777776....333333333333333346*************************** PP

  Methyltransf_12  93 LkpgGrl 99 
                      +kpgG++
       CTQ29126.1 149 VKPGGQV 155
                      *****85 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   4.9e-14   4.6e-11      38     154 ..      47     160 ..      18     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 4.9e-14
                      HHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-.T-EEEEEEES-GGG-S CS
  Ubie_methyltran  38 fveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfed.dsfDvvtvsfGlrnvt 130
                      ++ ++++++ g+kvlDv +G g la ++   ++e  +v++lD+ ++ L+v++ ++ e+g i+++++q   ee   +  + +Dvvt    l  v+
       CTQ29126.1  47 YIAERSGGLFGKKVLDVGCGGGILAESM---AREGATVTGLDMGAEPLQVARLHALESG-IQVDYVQETVEEHAAKHpQQYDVVTCMEMLEHVP 136
                      678899999*************888665...456779******************9998.58********999988879*************** PP

                      -HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 131 DklkaLkeayrvlkpGGrlvvlef 154
                      D + +++   r +kpGG+++   +
       CTQ29126.1 137 DPQSVVHACARLVKPGGQVFFSTI 160
                      ******************986554 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0     1e-12   9.5e-10      63     195 ..      57     186 ..      44     222 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1e-12
                 T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-.EEEEE.S-GGG-----SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT CS
        CMAS  63 GmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerk.vevkl.ldyedldekvdrvvsvgafehvgkenydtffkklkkllked 159
                 G+++Ld+GcG G l+  ++++ ++ v gl + +e  ++a+ +  e +++ + v+ ++  +    ++++d v  ++++ehv     +  ++++ +l+k++
  CTQ29126.1  57 GKKVLDVGCGGGILAESMARE-GATVTGLDMGAEPLQVARLHALESGIQVDyVQETVeEHAAKHPQQYDVVTCMEMLEHVPDP--QSVVHACARLVKPG 152
                 99**********999999999.****************9998888887744144344044456677**************866..567899******** PP

                 -EEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS-- CS
        CMAS 160 GllllhtitslhkkelaerglklkfidkeiFPgGel 195
                 G +   ti +  k +l +   + +++ k + P+G+ 
  CTQ29126.1 153 GQVFFSTINRNGKAWLMAVVGA-EYVMKMV-PKGTH 186
                 *********9999998855544.8887765.77765 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   2.7e-12   2.6e-09      46     175 ..      59     188 ..      14     197 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 2.7e-12
        NodS  46 dalevGcaaGalterlapyckrltvvdvveeaiararervkes.shiswivsdvqqfstd..ekfdlivvaevlyyiedvaelraavrnlvsllapdgq 141
                 ++l+vGc  G l+e +a     +t +d+  e ++ ar    es  ++ +++  v++  ++  +++d++ + e+l ++ d + +   v+   +l++p+gq
  CTQ29126.1  59 KVLDVGCGGGILAESMAREGATVTGLDMGAEPLQVARLHALESgIQVDYVQETVEEHAAKhpQQYDVVTCMEMLEHVPDPQSV---VHACARLVKPGGQ 154
                 69***********************************98777515788999999887654338**********9999988765...6666777889999 PP

        NodS 142 lvfGsardavcrrwG.hvaGaetvlallnesllev 175
                 + f s+++ + + w   v+Gae v++++ +  + v
  CTQ29126.1 155 V-FFSTINRNGKAWLmAVVGAEYVMKMVPKGTHDV 188
                 5.6699********72589********97766555 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.1e-09     1e-06      31     103 ..      56     128 ..      45     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.1e-09
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTST..TS-EEEEEE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeve..ekkfdlivs 103
                 + +kvlD+GcG G+l+ ++a+e  +  vt +d  a+ l++a+  + +++++v++v++ v e+++  ++++d++ +
  CTQ29126.1  56 FGKKVLDVGCGGGILAESMAREGAT--VTGLDMGAEPLQVARLHALESGIQVDYVQETVEEHAAkhPQQYDVVTC 128
                 5689*****************8776..9***********************999999998876634689999865 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     3e-09   2.9e-06     162     261 ..      57     160 ..      51     181 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3e-09
        PrmA 162 geevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveakl.evalseellk.eekadvivaNILaevl...ielaedikklvkeggl 255
                 g++vlDvG+G GiLa   a+ ga +v+++D+    ++va+  a   +++    + +++e++ k  +++dv+ +  + e +    + +   ++lvk+gg+
  CTQ29126.1  57 GKKVLDVGCGGGILAESMAREGA-TVTGLDMGAEPLQVARLHALESGIQVDYvQETVEEHAAKhPQQYDVVTCMEMLEHVpdpQSVVHACARLVKPGGQ 154
                 689************99999987.69**************999888887744022334444334689*****987777763445799999********* PP

        PrmA 256 lilSGi 261
                 + +S i
  CTQ29126.1 155 VFFSTI 160
                 **9988 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   6.8e-08   6.4e-05     114     234 ..      55     174 ..      47     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.8e-08
                     -TT-EEEEET-TTSHHHHHHHHCT-SEEEEE-..--HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T.---EEEEEEES-GGG-S-HHHHHHHH CS
  Methyltransf_9 114 lkgrtildvGcgnGyhlwrmvgegaklvvGid..Pselfliqfeavrkllgedqrahllplgieqlpe.leafdtvfsmGvlyhrrsPldhllql 205
                     l g+++ldvGcg G     m+ ega++  G+d   + l +  ++a++  +  d  + ++    e+  +  + +d+v  m +l h   P   + + 
      CTQ29126.1  55 LFGKKVLDVGCGGGILAESMAREGATV-TGLDmgAEPLQVARLHALESGIQVDYVQETV---EEHAAKhPQQYDVVTCMEMLEHVPDPQSVVHAC 145
                     779*************99999999875.5655114556778888988888777666665...3444434789*********************** PP

                     HCTEEEEEEEEEEEE-BSS-TT-EE--SS CS
  Methyltransf_9 206 kdqlvkgGelvletlvieGdenavlvPed 234
                        ++ gG++ + t+  +G    + v   
      CTQ29126.1 146 ARLVKPGGQVFFSTINRNGKAWLMAVVGA 174
                     99999*******99999888765555444 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   9.7e-08   9.2e-05      15     103 ..      58     150 ..      55     189 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 9.7e-08
        MetW  15 srvldlGcGdGellellke.ekqvdgrGleldeegv..aecvakGlsv..iqgdldkdlenfedksfdyvvlsqtlqatrnpkevldellrigr 103
                  +vld+GcG G l e ++     v+g  +  +   v   ++++ G++v  +q+ +++  +++++ ++d+v     l  + +p++v++   r+ +
  CTQ29126.1  58 KKVLDVGCGGGILAESMAReGATVTGLDMGAEPLQVarLHALESGIQVdyVQETVEEHAAKHPQ-QYDVVTCMEMLEHVPDPQSVVHACARLVK 150
                 69***********9987540455555433333334411568999*9986678889999888885.79******************999888754 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   2.4e-06    0.0023      27      99 ..      58     120 ..      52     215 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.4e-06
  Methyltransf_32  27 ltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeatssktlt 99 
                      ++v+DvG+G g L+  +a    e +  v+g+d+ +e  + a+  a + g ++       + ++ee+ ++   +
       CTQ29126.1  58 KKVLDVGCGGGILAESMAR---E-GATVTGLDMGAEPLQVARLHALESGIQV----DYVQETVEEHAAKH--P 120
                      589****************...5.99**************999999988333....33333333333211..2 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   6.6e-05     0.062      51     146 ..      59     157 ..      33     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.6e-05
                 .EEEETSTTTTTHHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT-SSEEEEES-CCC..TTTTT-EEEEEEC-SSSH....HHHHHHHCCCEEEEEE CS
        GidB  51 kviDvGsGaGlPGipLaiarpelkltLleslekkiaFLeevkeelklenveivearaee..kqeeekydvvtsRAlasl....nelteillkllkeggl 143
                 kv+DvG G+G+  +  ++ar+   +t l+      +  +    e +++ v +v++ +ee   ++ ++ydvvt+  + +     + +++ + +l+k+gg+
  CTQ29126.1  59 KVLDVGCGGGI--LAESMAREGATVTGLDMGAEPLQVARLHALESGIQ-VDYVQETVEEhaAKHPQQYDVVTCMEMLEHvpdpQSVVHACARLVKPGGQ 154
                 58999999997..55567777788888887666554444444455555.66999999998889*********97654432222789999999*****99 PP

                 EEE CS
        GidB 144 ila 146
                 +++
  CTQ29126.1 155 VFF 157
                 986 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011      0.11      19      74 ..      37      93 ..      23     129 .. 0.77
   2 ?   -2.8   0.0       4.3     4e+03     140     157 ..     144     161 ..     139     163 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
                -SS--HHHHHHHHT..T-S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHH CS
        TPMT 19 qeevnpllkkflda.lkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvek 74
                ++++npl   ++ + +    g++vl  +CG+++ +  +A +g +v G+++    ++ 
  CTQ29126.1 37 LHRINPLRLGYIAErSGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGAEPLQV 93
                567777766676665777889999*9***********************98776665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.3
                 HHHHHEEEEEE..EEEEE CS
        TPMT 140 slaelLkpdgeglLvtld 157
                 + a+l+kp+g++++ t++
  CTQ29126.1 144 ACARLVKPGGQVFFSTIN 161
                 568999*****9998875 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0001     0.094      95     187 ..      57     158 ..      43     162 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
        DREV  95 dkklldlGaGdGeitkrvaptfeevyatelset..mrdrlkkk......kynvlsale.lqetdvkldlilclnlldrcfdplklledirsalepngrv 184
                  kk+ld+G G G +++ +a     v   ++  +     rl+ +      +y   ++ e  ++   ++d+++c+++l+   dp  +++      +p g+v
  CTQ29126.1  57 GKKVLDVGCGGGILAESMAREGATVTGLDMGAEplQVARLHALesgiqvDYVQETVEEhAAKHPQQYDVVTCMEMLEHVPDPQSVVHACARLVKPGGQV 155
                 689***************999888766665543113345554411111134444444545566789*****************9999999999998888 PP

        DREV 185 iva 187
                   +
  CTQ29126.1 156 FFS 158
                 765 PP

>> Sterol_MT_C  Sterol methyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.54   5.1e+02      17      30 ..     125     138 ..     122     158 .. 0.79
   2 ?    9.4   0.0    0.0014       1.3       7      41 ..     161     195 ..     155     198 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.54
  Sterol_MT_C  17 lvkvleflglapkG 30 
                  +v+++e+l ++p  
   CTQ29126.1 125 VVTCMEMLEHVPDP 138
                  78999999999975 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0014
  Sterol_MT_C   7 tkvGrfithnlvkvleflglapkGtqkvaefLekA 41 
                  ++ G+    ++v++  +++++pkGt++v++f + A
   CTQ29126.1 161 NRNGKAWLMAVVGAEYVMKMVPKGTHDVKKFIKPA 195
                  677888888999999999************99866 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00019      0.18      15      65 ..      57     105 ..      44     131 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
  Methyltransf_18  15 gsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagled 65 
                      g++v+D+G+  g+l+  +++eg +  v+  D+ ++pl+ a+ ++ ++g++ 
       CTQ29126.1  57 GKKVLDVGCGGGILAESMAREGAT--VTGLDMGAEPLQVARLHALESGIQV 105
                      689****************99976..99*************9999988854 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00019      0.18      32     106 ..      58     131 ..      50     161 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00019
                 -EEEEES-TTSHHHHHHHHTT-EEEEEES-HHH..HHHHHHHHHHTT-TTEEEEE--GGG----S-EEEEEEESSGG CS
        TehB  32 gkvldlgcgqgrnslylsllgydvtawdknens..iafleeikekenlknistalydineaklderydfilstvvlm 106
                  kvld+gcg g  +  ++  g  vt +d  ++   +a l+ +++  +++ ++  +++  +ak  ++yd +      m
  CTQ29126.1  58 KKVLDVGCGGGILAESMAREGATVTGLDMGAEPlqVARLHALESGIQVDYVQE-TVEEHAAKHPQQYDVVTCME--M 131
                 59**************************9987511566777777777775554.55667888999999775433..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1772.56
//
Query:       CTQ29127.1  [L=761]
Description: ribonucleoside diphosphate reductase 1, alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.6e-122  407.2   0.0     1e-119  400.4   0.0    2.3  1  Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
    6.1e-16   58.8   0.1    1.5e-15   57.5   0.1    1.8  1  ATP-cone         ATP cone domain
    2.8e-13   49.7   0.1    7.5e-13   48.3   0.1    1.8  1  Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain


Domain annotation for each model (and alignments):
>> Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.4   0.0  1.8e-123    1e-119       1     523 [.     223     731 ..     223     732 .. 0.97

  Alignments for each domain:
  == domain 1  score: 400.4 bits;  conditional E-value: 1.8e-123
                      EEE.....BSS-EEEE-X..............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC   1 ssCfvlsvedslesIletvkeaallskaggGvGlnlsklRakgslvkgtegaasGpvsfmklidavadvvkqgGkRrGAamvylevwHpDiekf 94 
                      ssC++++  dsl+sI  t +++++++++++G+G+n+ ++Ra gs+++g e  ++G+++f+k++++ ++ ++qgG+R GAa++++ +wH ++e++
       CTQ29127.1 223 SSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESL 316
                      8********************************************************************************************* PP

                      XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............................XXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC  95 idaKekntgeeenrlsnlnisvgvpdlFmeavkedkdwtLfsPrtvvkleklyg...eefeeeyeeleekakikkkevkakeLfeeiaesawet 185
                      + +K +n g++ nr+++++++v ++ l++ ++ +++d+tLfsP++v+ l++ +    +efe+ y+++e++ +i+k+++ka eLf+ +++ +++t
       CTQ29127.1 317 LVLK-NNRGTDANRVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFadqDEFERLYTQYEQDDSIRKQRIKAVELFSLMMQERAST 409
                      ****.99*****************************************99987645466*********************************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 186 gePgvlfkDtiNrrnvlekakggkIratNlCgEiplleyes.........vavCnLasinLakfvkkdeegkkefdwdelkkviqlvvraLdnv 270
                      g+ ++++ D++N+++++++  + ++r++NlC Ei+l++++          +a+C+L++ nL ++           ++del++   l+vraLd++
       CTQ29127.1 410 GRIYIQNVDHCNTHSPFDPV-VAPVRQSNLCLEIALPTKPLedvndengeIALCTLSAFNLGAID----------SLDELEELAVLAVRALDAL 492
                      *****************888.5*****************9999*********************9..........99***************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.. CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 271 idvnkyplpeiekntkktRriGlGvmgladalaklgipydseealkfarkitelltyyaykaSvelAkergpfplfekskyskgilpvdefeek 364
                      +d+++yp+p+++++++ +R++G+Gv ++a +lak+g +y +  a+++++k++e+++yy +kaS+elA e+g++p f+++ y++gilp+d++++ 
       CTQ29127.1 493 LDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAIEQGACPWFNETTYAQGILPIDTYKKD 586
                      *******************************************************************************************433 PP

                      ............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      x........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 365 e........kedweeLreeikkyGlrnamvtalaPTgsiSliagtssgiePifalvykksvtvgeflevnpvfeeeLkklglwseellkkiles 450
                               + dwe Lre+ik++Glrn++++al+P++++S+i ++++gieP   +v++k +++g + +v p                       
       CTQ29127.1 587 LdgivseplHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGHVSIKASKDGILRQVVPDY--------------------- 659
                      367777778********************************************************99997777..................... PP

                      XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 451 vqgleeipeeikrvfktaldi.dqedhikaqaaiqkwidqsiSktinl......pneatvedvkelyllAwklGlKgvty 523
                              e++++ ++  +++ ++  +++++  +qk+idqsiS + n+        +++++++ + +l+A+k G+K+++y
       CTQ29127.1 660 --------ENLQNAYELLWEMpNNDGYLQLVGIMQKFIDQSISANTNYdptrfpSGKVPMQQLLKDLLNAYKFGVKTLYY 731
                      ........78999********666789**************************999***********************9 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.1   2.6e-19   1.5e-15       2      86 .]       6      92 ..       5      92 .. 0.90

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 2.6e-19
                EEE-TTS-EEE--HHHHHHHHHHHHHH.-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHHHHHHHHH.....HSS-HHHHHHHHHHHHHHHH CS
    ATP-cone  2 kViKRdGtvepfdvekIkraiekAceg.seeeideiaeeveaevrkrlrdgisteeIqdlvektli.....ehpdyavaaayilyrnlrke 86
                 V+KRdGt+e ++ +kI r + +A+eg ++  i+++    e++  ++++dgi+t +I++ ++k+++     ++pdy+++aa++  ++lrk+
  CTQ29127.1  6 LVTKRDGTTERINLDKIHRVLDWAAEGlNNVSISQV----ELRSHIQFYDGIKTADIHETIIKAAAdlisrDAPDYQYLAARLAIFHLRKK 92
                59*************************555555555....556666*******************************************96 PP

>> Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.1   1.3e-16   7.5e-13       1      82 [.     141     219 ..     141     220 .. 0.93

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 1.3e-16
  Ribonuc_red_lgN   1 kkltynalkvledrYllkde.ngeivEspqqmfmRvAlalaiaealydkleedkdlaeefydlmssqkflpasPtlmnaGtel 82 
                      ++++y+a+k le +Yl +++  gei+Es q ++  vA+ l  +      +e++ d++++fyd+ s +k+++++P+++  +t++
       CTQ29127.1 141 MNFSYAAVKQLEGKYLVQNRvTGEIYESAQFLYILVAACLFSNYP----RETRLDYIKRFYDAVSTFKISLPTPIMSGVRTPT 219
                      589*****************666*******************776....57**************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5584.79
//
Query:       CTQ29128.1  [L=376]
Description: ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-50  171.5   1.2    3.3e-50  171.1   1.2    1.1  1  Ribonuc_red_sm  Ribonucleotide reductase, small chain


Domain annotation for each model (and alignments):
>> Ribonuc_red_sm  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   1.2   1.9e-54   3.3e-50       7     279 .]      32     332 ..      27     332 .. 0.92

  Alignments for each domain:
  == domain 1  score: 171.1 bits;  conditional E-value: 1.9e-54
                     -SSHHHHHHHHHHHCT---GGGS-GHHHHHHHHSTS-HHHHHHHHHHHHHHHHHHHHHHHCHHHCHHCCBSSHHHHHHHHHHHHHHHHHHHHHHH CS
  Ribonuc_red_sm   7 ikypeiwelykkleanfWtpeevdlskDlkdwkekLsedekefikkvlaflalldtivnenlverllsevqipearafygfqaamEniHaesYsl 101
                      ky+ + +l +k+ + fW peevd+s D  d++  L e+ek+++ ++l+  +lld+i++     +ll+ + ipe +  + + a+ E+iH++sY +
      CTQ29128.1  32 QKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ-ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTH 125
                     68999***************************9.6************************************************************ PP

                     HHHHHT.-HHHHHHHHCHHHH-HHHHHHHHHHHHHHCTTTSC...........................HHHHHHHHHHHHHHHCCCHHHHHHHH CS
  Ribonuc_red_sm 102 lletlvkdekekdelfnaieenpalqkkaewikkwyeskkde...........................ekfaerlvafallegilfysgFaail 169
                     ++  +v+d+++   +f+ i +n+++qk+ae i+ +y+s  +                            +k++  l+   +le i fy +Fa  +
      CTQ29128.1 126 IIRNIVNDPAT---VFDDIVTNEQIQKRAEGISHYYDSLIEMtsywhllgegthtvngktvtvnlrelkKKLYLCLMSVNALEAIRFYVSFACSF 217
                     ******88886...******************999997653389*********************998666555666666*************** PP

                     HHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT..BTTCHHHHHHHHHHHH CS
  Ribonuc_red_sm 170 wlkkrgllpglaeiielilrDeglHtdfagllfkelkeen.....elenkeleeeveelikeavelEkefitdalpv.ellglnkedvkqYieyv 258
                      +++r+l++g a+ii+li+rDe+lH++    + + l+         +  +e ++e ++l+  a + Eke++++++   +++glnk+ ++qY+ey+
      CTQ29128.1 218 AFAERKLMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGSddpemAEIAEECKQECYDLFVLAAQQEKEWADYLFRDgSMIGLNKDILCQYVEYI 312
                     ****************************99999999765442223344559************************6669**************** PP

                     HHHHHHCTT---SS-TT---C CS
  Ribonuc_red_sm 259 adrllmnlgyeklYnveeenP 279
                     ++ ++++ g++  +++ ++nP
      CTQ29128.1 313 TNIRMQAVGLDLPFQT-RSNP 332
                     **************99.6887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 3121.28
//
Query:       CTQ29129.1  [L=84]
Description: putative 2Fe-2S cluster-containing protein; putative oxidoreductase subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-12   46.7   1.1    2.5e-12   46.5   1.1    1.1  1  Fer2      2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
      0.017   15.1   0.0       0.02   14.9   0.0    1.2  1  Fer2_3    2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   1.1   2.8e-16   2.5e-12       7      78 .]      10      77 ..       4      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 2.8e-16
                EEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESCE.CTTSSSSTHHHHHTTEEEEGGGSEES CS
        Fer2  7 evevevadgettlldaaeenggidipysCggggCgtClvevlegev.qsdetelegeeldegklrlaCqtivt 78
                ++++e++d+  +ll a+e+  +i ++y C++g Cg+C++++++g+v +     +e     + + +l C+++++
  CTQ29129.1 10 DTRLECQDEHPSLLAALESH-NINVEYQCREGYCGSCRTRLVSGQVdW----LTEPLAFIQPGEILPCCCRAK 77
                56889999999999999987.9************************84....4566666667778****9985 PP

>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.2e-06      0.02      44      63 ..      29      48 ..       6      62 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.2e-06
      Fer2_3 44 ptlafrasCregiCGscava 63
                ++++ +++Creg CGsc  +
  CTQ29129.1 29 HNINVEYQCREGYCGSCRTR 48
                578899***********765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 758.64
//
Query:       CTQ29130.1  [L=356]
Description: periplasmic glycerophosphodiester phosphodiesterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-75  254.8   0.1    1.2e-75  254.7   0.1    1.0  1  GDPD         Glycerophosphoryl diester phosphodiesterase fami
     0.0014   18.8   0.1     0.0028   17.8   0.1    1.5  1  CRISPR_Cas2  CRISPR associated protein Cas2
  ------ inclusion threshold ------
      0.073   13.0   0.6       0.65   10.0   0.1    2.4  2  DUF1730      Domain of unknown function (DUF1730)


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.7   0.1   1.9e-79   1.2e-75       1     259 []      33     347 ..      33     347 .. 0.99

  Alignments for each domain:
  == domain 1  score: 254.7 bits;  conditional E-value: 1.9e-79
                 TTTTTTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH...........BGGGS-HHHHHTST.....ECCTTCCCCSCCC CS
        GDPD   1 HRGasgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagr..........ldvkdltleelkrld.....kiakenkaqlsen 84 
                 HRGasg+lpE+Tl+++a+A+++G dy+E+D+++TkD  +VvlHD+ ldr+tdva+r          ++  d+tl+e+k+l+     +++++++ q+++ 
  CTQ29130.1  33 HRGASGYLPEHTLPAKAMAYAQGTDYLEQDLVMTKDDRLVVLHDHYLDRVTDVAQRfpqrarkdgrFYAIDFTLAEIKSLKftegfEPKNGKNVQTYPG 131
                 **************************************************************************************999********** PP

                 SSGCC...B...BHHHHHHHHHHCCSEEEEEEECCCCCCCHHHH.HHTCHHHCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHTCT.....CTEEE CS
        GDPD  85 rvrle...fpfptleevlkkpqnvglnieikipmlseakeeeel.qivkeilksvdeilkkvlkkadkrkvifssfnpdilkllrekqp.....klpll 174
                 r+++    f+++t+ee ++++q+++++++++i++++e+k+++++ q  k+i++s+ ++lk+++++++++kv++++f++++lk+++++++     +l+l+
  CTQ29130.1 132 RFPMGksdFRIHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHhQEGKDIAASTLKVLKEYGYTSKQDKVYLQCFDANELKRIKNELEpkmgmDLNLV 230
                 ***999********************************************************************************************* PP

                 EEEHHHHHHC-E.......EECHCCCCCCCTCCCCHHCCCHCCCE.................B.CHHHHHHHTT-EEEEBSB-THS.........HHHH CS
        GDPD 175 flteggteaead......ssleraakfakadallgevsavaeglg.................dpdlVkraksrglvvhvytvnned.........eeem 241
                 +l+ +++++e++      ++++++++++ +++ +++++++a+g+g                  + +Vk+a+++ l+vh+ytv+ ++         + ++
  CTQ29130.1 231 QLIAYTDWNETQqkqadgKWVNYSYDWMFKPGAMAQIAQYADGIGpdyhmlvaegskpgavkLTAMVKEAHASHLQVHPYTVRADQlpeyatnvnQLYD 329
                 *************************************************************************************************** PP

                 HHHHCCC-SEEEES-HHH CS
        GDPD 242 krlleagvdgvitDfpdt 259
                  ++++agvdg++tDfpd+
  CTQ29130.1 330 VLYNQAGVDGLFTDFPDK 347
                 ****************96 PP

>> CRISPR_Cas2  CRISPR associated protein Cas2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   4.6e-07    0.0028      13      59 ..     180     226 ..     169     245 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.6e-07
                  HHHHHHHHHHHHHTTEEEEETTEEEEEESHHHHHHHHHHHHHHSHTT CS
  CRISPR_Cas2  13 rkrrrkvakilkkyGfqrvQySVFegelseaqleklkkrlkkiidpe 59 
                  +  ++   k+lk+yG++  Q  V++ + + ++l+++k++l+  +  +
   CTQ29130.1 180 KDIAASTLKVLKEYGYTSKQDKVYLQCFDANELKRIKNELEPKMGMD 226
                  55667778********************************9877654 PP

>> DUF1730  Domain of unknown function (DUF1730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.1   6.1e+02      36      46 ..      48      58 ..      30      63 .. 0.78
   2 ?   10.0   0.1   0.00011      0.65      32      65 ..     262     297 ..     229     310 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.1
                EE-GGGSSS-H CS
     DUF1730 36 kisryAlgrDY 46
                k   yA+g+DY
  CTQ29130.1 48 KAMAYAQGTDY 58
                5557******* PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00011
                 B..-EE-GGGS..SS-HHHHHHHHHHHHHHHHHTTS CS
     DUF1730  32 peegkisryAl..grDYHkvlkkrLkklaerleeev 65 
                    ++i+ yA   g DYH ++ +  k  a +l ++v
  CTQ29130.1 262 GAMAQIAQYADgiGPDYHMLVAEGSKPGAVKLTAMV 297
                 2349******95566****99887776666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2714.32
//
Query:       CTQ29131.1  [L=448]
Description: sn-glycerol-3-phosphate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-46  158.4  35.3    7.5e-45  153.4  27.8    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        5.4    6.6  16.0       0.25   11.0   1.9    4.0  6  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.4  27.8   8.4e-49   7.5e-45       1     353 []      34     400 ..      34     400 .. 0.82
   2 !   12.3   1.4   6.5e-06     0.058     133     177 ..     396     441 ..     396     448 .] 0.77

  Alignments for each domain:
  == domain 1  score: 153.4 bits;  conditional E-value: 8.4e-49
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa...sslw.lllvlrvlq 95 
                 ++++++ ++l r ++++a+p +l e+ g+s   +g++l++ +++++++ +++G++sdr  +r +l +gl+l al +l++ f+   +s+  +++vl +l+
  CTQ29131.1  34 IFFGYAAYYLVRKNFALAMP-YLIEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRIFLPAGLILAALVMLVMGFVpwaTSSImIMFVLLFLC 130
                 69******************.88777.9***********************************************6666653444555559******** PP

       MFS_1  96 GlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.Wravfyilaivsllafvlfllllpeepperkrkspkeee..... 188
                 G+++g+++p ++  +++w++++erg  +++++ + ++G  + pll  l +++++ W+a+ y+ a+ ++l+++ f++ ++++ p++   +p+ee      
  CTQ29131.1 131 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNdWHAALYMPAFGAILLAI-FAFAMMRDTPQSCGLPPIEEYkndyp 228
                 *********************************************9999999999***************99.56666666666666666666658877 PP

       MFS_1 189 .....kgtgpaplvp...awkallkdpvlwillialllfffgfsg...lltllplylqevlglsglllaglllallalvgailallagrlsdr..lgrr 274
                      k   + +l+      +++l ++    l+++++ + f++ +   +l ++p+yl+ev +++ l  +++++ l+  +g+++ ll+g++sd+   g+r
  CTQ29131.1 229 ddyseK--HEEELTAkqiFMQYILPNKL---LWYIAIANVFVYLLrygILDWSPTYLKEVKHFA-LDKSSWAYFLYEYAGIPGTLLCGWMSDKvfKGNR 321
                 776431..22222223433334444443...55555555555555666****************.8888888*********************444445 PP

       MFS_1 275 rrlllallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                  ++ +++  l+++a  +++l+++ ++ + ++ +++iGf  +g v  ++   a +lap+++agta+g+++++g+lgg++++
  CTQ29131.1 322 GATGVFFMTLVTIATVVYWLNPPGNPGVDMACMIIIGFlIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 400
                 55555555555556667899999***************888886.666677789999*******************9985 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 6.5e-06
       MFS_1 133 GailgpllggllasslgWravfyilaivsllafv.lfllllpeepp 177
                 G++ + ++ g+ ++ +gW + f+++ + s+la++ l+++ l e+++
  CTQ29131.1 396 GSVAASAIVGYTVDFFGWDGGFMVMIGGSVLAVIlLVIVMLGERRH 441
                 7889999*************************88444444444333 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.24   2.2e+03      29      50 ..      24      45 ..      12      51 .. 0.67
   2 ?   11.0   1.9   2.8e-05      0.25      12      52 ..      98     138 ..      66     157 .. 0.78
   3 ?    4.0   0.0     0.004        36      15      64 ..     175     222 ..     167     236 .. 0.67
   4 ?   -2.2   0.1      0.32   2.9e+03      32      51 ..     324     343 ..     295     355 .. 0.55
   5 ?   -2.4   0.4      0.35   3.2e+03       8       8 ..     353     353 ..     323     404 .. 0.56
   6 ?   -1.9   0.0      0.26   2.3e+03      10      24 ..     421     435 ..     411     446 .. 0.48

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.24
     DUF4131 29 rrrvllllllllllallgfalr 50
                rr ++ +++ +++  ++++++r
  CTQ29131.1 24 RRLRWQIFIGIFFGYAAYYLVR 45
                5666666666666665555554 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 2.8e-05
     DUF4131  12 lllllllllllllrrrprrrvllllllllllallgfalrap 52 
                 ++l+l++l  l+  + p+ +  ++++++ll+++++f+   +
  CTQ29131.1  98 AGLILAALVMLVMGFVPWATSSIMIMFVLLFLCGWFQGMGW 138
                 22222222222222389*******************97765 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.004
     DUF4131  15 llllllllllrrrprrrvllllllllllallgfalrapqpnandlsqlle 64 
                 l+ll  ++++   ++    + ++ ++lla + fa   ++p++  l+++ e
  CTQ29131.1 175 LFLLGMAWFN--DWHAALYMPAFGAILLAIFAFAMMRDTPQSCGLPPIEE 222
                 2233333333..78888888888888888888888888887777666665 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.32
     DUF4131  32 vllllllllllallgfalra 51 
                 + ++++ l  +a+++++l  
  CTQ29131.1 324 TGVFFMTLVTIATVVYWLNP 343
                 44444444444444444333 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 0.35
     DUF4131   8 v 8  
                 +
  CTQ29131.1 353 C 353
                 1 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 0.26
     DUF4131  10 lalllllllllllll 24 
                 ++  +l+ +ll+++ 
  CTQ29131.1 421 IGGSVLAVILLVIVM 435
                 333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3083.44
//
Query:       CTQ29132.1  [L=540]
Description: sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-54  184.0   2.1    8.1e-54  183.5   2.1    1.2  1  DAO            FAD dependent oxidoreductase
      1e-09   38.6   3.2    2.9e-09   37.1   3.2    1.9  1  Fer2_BFD       BFD-like [2Fe-2S] binding domain
    6.2e-08   32.4   1.0    5.2e-07   29.4   1.0    2.0  1  FAD_oxidored   FAD dependent oxidoreductase
    6.7e-07   28.7   4.9    8.6e-06   25.1   4.9    2.1  1  FAD_binding_2  FAD binding domain
    1.3e-05   25.0   0.0    2.4e-05   24.2   0.0    1.4  1  DAO_C          C-terminal domain of alpha-glycerophosphate ox
    1.4e-05   24.5   2.2     0.0001   21.7   2.2    2.0  1  FAD_binding_3  FAD binding domain
    0.00023   21.3   0.9     0.0011   19.2   1.1    2.1  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    0.00034   20.0   0.0     0.0033   16.7   0.0    2.0  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0023   17.2   0.2      0.011   15.0   0.1    2.0  2  Thi4           Thi4 family
     0.0024   16.7   0.1      0.011   14.5   0.1    1.8  2  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
      0.011   15.6   0.1      0.018   14.9   0.1    1.3  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
      0.013   16.0   0.1       0.42   11.2   0.3    2.8  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.035   13.2   1.3      0.053   12.6   1.3    1.2  1  GIDA           Glucose inhibited division protein A
      0.042   13.1   0.8      0.062   12.6   0.8    1.2  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
       0.28   10.3   0.1        5.8    6.0   0.0    2.0  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.5   2.1   6.8e-57   8.1e-54       2     352 .]       9     357 ..       8     357 .. 0.81

  Alignments for each domain:
  == domain 1  score: 183.5 bits;  conditional E-value: 6.8e-57
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHH CS
         DAO   2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeelea 98 
                 v+iiGGG +G+++A++ arrg  ++l+e++ ++++ga+grn gllhsg ry+       + ++e++ e r l +  + ++  + +Gl ++   e++l+ 
  CTQ29132.1   9 VIIIGGGATGAGIARDCARRGlrTLLIERH-DIATGATGRNHGLLHSGARYAVTDN---ESARECISENRILRRI-ARHCIEPTNGLFITL-PEDDLAW 101
                 9*****************************.5555**************9887653...5566666666666655.456766666666665.5445777 PP

                 HHHHHHHHHHTTTTEEEEEHHHHHHHSTT.STTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE...EECTEEE.EE CS
         DAO  99 ldkllallleagldaelldaeevrelepa.lpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve...rttpgen.da 192
                  +  ++++++ag++a  l+++e++++epa  p llga+ +pd g++dp++ltaa + +a+++G++il+g+evtgl +++++v gv+   r     + ++
  CTQ29132.1 102 QQTFIDACQQAGIEATPLSPQEALRREPAvNPTLLGAVQVPD-GTIDPFRLTAANMLDAREHGAQILTGCEVTGLLRRGDRVCGVQvydR-----QlHQ 194
                 7788888899***9999***99******9766888*******.*******************************9788889999966431.....2234 PP

                 EEE.....EEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEE.EESSE..EETTCSSTSCSHH CS
         DAO 193 ada.....vVnaaGawsdllgllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlv.Ggtad..eesgdddpevdee 283
                 a++     vVnaaG+w + ++   +l++ + p++g+ l l+++ ++lv ++        + +++  +++p   +++ + G+t    + +  dd +v+++
  CTQ29132.1 195 ARTlyagmVVNAAGIWGQRIAEYADLRITMFPAKGSLLILDHRINNLVINR-------CRKPADADILVPG--DTISLiGTTSMhiPYDEIDDNRVTAA 284
                 45566788********98662225567799**********88777666554.......89999999****4..445553888669966666667***** PP

                 HHHHHHHHHHHHSGGG..CGEEEEEEEEEEE..TTSSEEEEEEETEEEEEEEEEC...TTTHHHHHHHHHHHHHHH CS
         DAO 284 didellealrklfPql..gdvlrkwaGlrpl..pdglpligetpgvkglylatGh...sghGltlapatGkllael 352
                 ++d ll++ +kl P     ++lr+++G+rpl   d++p    +  ++g++l+  +   +  G+ + ++ Gkl++++
  CTQ29132.1 285 EVDTLLREGEKLAPVMgrTRILRAYSGVRPLvaSDNDPSGRSV--SRGIVLLDHAqrdGMEGFITITG-GKLMTYR 357
                 ***************6337799********6557****97775..78888876667779999999999.***9986 PP

>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   3.2   2.4e-12   2.9e-09       1      50 [.     430     482 ..     430     483 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 2.4e-12
    Fer2_BFD   1 iVCrCegvtegeIrdairraglttveevkrrtkagtg.Cgg..CrpaieeiLa 50 
                 +VC+Ce+vt+ge++ a+++  + t+ +++rrt+ g+g C+g  C  +++ +L+
  CTQ29132.1 430 LVCECEAVTAGEVKYAVENLAVNTLLDLRRRTRIGMGtCQGelCACRAAGLLQ 482
                 6****************6655**********************9888888886 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   1.0   4.4e-10   5.2e-07       1     144 [.       8     208 ..       8     209 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 4.4e-10
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlG.......Glltsglvatdignkaee..qvvtgiareflerlrq.rgga.....rlkkrskw. 81 
                   +v+++GGg+ G   A  +ar+G ++lL+e+++          Gll sg++ +++ n++++     ++i r++ +++ + ++g      +  ++ +w 
    CTQ29132.1   8 EVIIIGGGATGAGIARDCARRGLRTLLIERHDIATgatgrnhGLLHSGARYAVTDNESARecISENRILRRIARHCIEpTNGLfitlpE--DDLAWq 102
                   59***************************988776011133344555555555555555577555556666666555544444664321..444443 PP

  FAD_oxidored  82 n.........................................tfepevakavleeml..aeagvtvllntrlvevekegkriesvtveske.g.rkt 133
                   +                                         t +p  ++ ++ +ml  +e+g ++l+++++++  ++g+r+ +v+v +++ +  +t
    CTQ29132.1 103 QtfidacqqagieatplspqealrrepavnptllgavqvpdgTIDP--FRLTAANMLdaREHGAQILTGCEVTGLLRRGDRVCGVQVYDRQlHqART 197
                   2466777888889999999999999999999999999988666666..5666788889999******************************98899* PP

  FAD_oxidored 134 irAkvfiDATg 144
                   + A +++ A g
    CTQ29132.1 198 LYAGMVVNAAG 208
                   ******99865 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   4.9   7.2e-09   8.6e-06       2     216 ..       9     219 ..       8     229 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 7.2e-09
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHT....................TT-S CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkal....................dela 77 
                    vi+iG+G+ G   A  +a++Gl+++++e  +   gat    G +   + + +    ++d  e++r+   ++                     +e+ 
     CTQ29132.1   9 VIIIGGGATGAGIARDCARRGLRTLLIERHDIATGATGRNHGLLHSGA-RYA----VTD-NESARECISENRilrriarhcieptnglfitlPED- 97 
                    9******************************99998887777776544.222....222.22222222111122233222234444444432222. PP

                    -HHHHHHHHHTHHHHHHHHHHTT----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTE CS
  FAD_binding_2  78 dqplveafveaapeavdeLeelgvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedgr 173
                    d +++++f++a+++a  e +    p+s+    + ++r+  ++++t + ++ + ++  +  ++ ++l a+ +  ar++g ++++ +e++ L+++++r
     CTQ29132.1  98 DLAWQQTFIDACQQAGIEAT----PLSP----QEALRREPAVNPT-LLGA-VQVP--DGTIDPFRLTAANMLDAREHGAQILTGCEVTGLLRRGDR 181
                    44455555555555444444....4444....6677777777777.3333.3333..345666888888888899********************* PP

                    EEEEEEEETTTTCEEEEEESEEEE-----GG..........GS CS
  FAD_binding_2 174 vtGavvenpesgrevrirakavvlatgGfgrallkellgaaae 216
                    v G+ v +++  + +++ a  vv a+g +g+     +++++a+
     CTQ29132.1 182 VCGVQVYDRQLHQARTLYAGMVVNAAGIWGQ-----RIAEYAD 219
                    *********999999***************7.....3334444 PP

>> DAO_C  C-terminal domain of alpha-glycerophosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0     2e-08   2.4e-05       1     102 [.     377     469 ..     377     483 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2e-08
                 --TTS---TT--.......TT-STTHT--HHHHHHHHHHHGGGHHHHHHHHHHTH...HHHHHTTS-HHHHHHHHHHHHHS---SHHHHHHTTS-HHHH CS
       DAO_C   1 crTkklpLvGaenwsknlaaelaqeygldeevaehLaerYGsraeevlelakedekpelaerlspelpyieaevvYavrhEmartlvDvlaRRtrlafl 99 
                 c+T++ pL+G+++    +   l++ ++l++      + r G+r+++ l    ++   ++++ +++ + ++ +ev+Yav++  + tl D l RRtr+ + 
  CTQ29132.1 377 CTTAEAPLPGSQE---PTESTLQKIISLPTPLRGSAVYRHGDRTPSWL--GDSR---QHRSLVCECEAVTAGEVKYAVENLAVNTLLD-LRRRTRIGMG 466
                 99**********5...55577888899********************9..5544...4789999************************.79*****998 PP

                 -HH CS
       DAO_C 100 dad 102
                 + +
  CTQ29132.1 467 TCQ 469
                 554 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   2.2   8.7e-08    0.0001       2     167 ..       7     212 ..       6     292 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 8.7e-08
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS.S--EE.EHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE................ CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp.radgl.nqrtmellrqlGledrilaegapnelmgealyne................ 79 
                     +V+I+G+G +G+  a+  +++G r++l+e+++ ++  + r +gl ++       +   ++++++e +    ++ +  ++                
     CTQ29132.1   7 SEVIIIGGGATGAGIARDCARRGLRTLLIERHDIATGATgRNHGLlHSGARYAVTDNESARECISENRILRRIARHCIEPtnglfitlpeddlawq 102
                    68******************************9877665587775244444455566666666666655555555555556666666669999999 PP

                    ......................CCCCCEEEEEHHCHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCC.EEEECCTTEEEE CS
  FAD_binding_3  80 ......................lsdtpkaradlelesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvta.evrdketgeeet 152
                                          l++ p ++  l    + ++ t+ p   +   ++++ +e+g+q+  + ev++l++ ++ v   +v+d++  + +t
     CTQ29132.1 103 qtfidacqqagieatplspqeaLRREPAVNPTLLGAVQVPDGTIDPFRLTAANMLDA-REHGAQILTGCEVTGLLRRGDRVCGvQVYDRQLHQART 197
                    999999888886666655544444434333333346888889999999999999998.899**************99999975267799999999* PP

                    EEEEEEEE--GTT-H CS
  FAD_binding_3 153 vrakYlvGaDGgrSt 167
                    + a  +v a G +++
     CTQ29132.1 198 LYAGMVVNAAGIWGQ 212
                    *********999985 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.1   8.9e-07    0.0011       1      37 [.      11      45 ..      11      71 .. 0.83
   2 ?   -2.8   0.0       6.7     8e+03      46      61 ..     161     172 ..     158     178 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 8.9e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-E CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraas 37
                   I+G+G++G+ +A+ +a++g++ ll+e++d   G   +
     CTQ29132.1 11 IIGGGATGAGIARDCARRGLRTLLIERHDIATGA--T 45
                   9***************************998774..3 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.7
                    CTS---EEETTHHHHC CS
  NAD_binding_8  46 dygahifhgsgyypnv 61 
                    ++ga+i++g++    v
     CTQ29132.1 161 EHGAQILTGCE----V 172
                    79999999974....4 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.8e-06    0.0033       2      57 ..       8      67 ..       7     111 .. 0.70
   2 ?    1.0   0.0      0.17   2.1e+02     192     240 ..     158     212 ..     144     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.8e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias 57
                 +v++iGgG+ G   a++ a+ g++++l+e    ++g++  ++ ll++ ++ +  d e a+
   CTQ29132.1  8 EVIIIGGGATGAGIARDCARRGLRTLLIErhdiATGATGRNHGLLHSGARYAVTDNESAR 67
                 69**************************76666444444444444555555544444444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.17
                  HHHHTTEEEEESCEEEEEEETTE......EEEEEETTSCEEEESEEEE-S-EEES CS
                  xxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 192 alekeGvevklgtsvkeidgnge......klevvledgeeidadlvvvavGvrps 240
                    +++G ++ +g++v+ + ++g+       ++ +l + +++ a +vv a+G+  +
   CTQ29132.1 158 DAREHGAQILTGCEVTGLLRRGDrvcgvqVYDRQLHQARTLYAGMVVNAAGIWGQ 212
                  5689999*********999999988866444488888999999999999997555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   9.1e-06     0.011      17      55 ..       6      44 ..       1      72 [. 0.85
   2 ?   -0.6   0.0      0.53   6.4e+02     152     177 ..     146     171 ..     134     208 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.1e-06
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS.SS--T CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailers.vspGG 55
                +s+v+i+G+G++G   a+  a++ +l+++++er+ ++ G 
  CTQ29132.1  6 DSEVIIIGGGATGAGIARDCARR-GLRTLLIERHdIATGA 44
                689********************.********97356554 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.53
                 -B-EEEEEEEEEE--GSSSTTTTHHH CS
        Thi4 152 vDPlvirakvvvdatGhdgeivavvv 177
                 +DP  + a+ ++da  h ++i + ++
  CTQ29132.1 146 IDPFRLTAANMLDAREHGAQILTGCE 171
                 56666666666666666666554443 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   8.8e-06     0.011       2      33 ..       8      39 ..       7      72 .. 0.92
   2 ?   -0.6   0.0      0.35   4.2e+02     119     187 ..     159     222 ..     152     243 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.8e-06
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 +vi+iGgGa G   A  +a+rg r+ll+e+ +
   CTQ29132.1  8 EVIIIGGGATGAGIARDCARRGLRTLLIERHD 39
                 79***************************875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.35
                  HHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-GGGT--SHHHHHHHHTT--E CS
  HI0933_like 119 lkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiPklGstgkgyklaeqfghti 187
                  ++e g ++ + +ev+++ ++ d++  v++  +++l+ ++++ A  G+ +   G  g+  ++ae ++++i
   CTQ29132.1 159 AREHGAQILTGCEVTGLLRRGDRVCGVQV-YDRQLHQARTLYA--GMVVNAAGIWGQ--RIAEYADLRI 222
                  678999**********************9.7888888888888..776666665444..4444444444 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   1.5e-05     0.018       2      34 ..       9      41 ..       8      82 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseea 34
                v +iG G  Gagia  +a++gl++ l+++++ a
  CTQ29132.1  9 VIIIGGGATGAGIARDCARRGLRTLLIERHDIA 41
                789***********************9986543 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00035      0.42       2      33 ..       9      40 ..       8      48 .. 0.92
   2 ?    0.0   0.0       1.1   1.3e+03      50      78 ..     159     187 ..     152     191 .. 0.80
   3 ?   -0.8   0.0       1.9   2.3e+03      23      52 ..     220     248 ..     206     249 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00035
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdk 33
                v+++GgG +g   A   a+ g ++ ++er+d 
  CTQ29132.1  9 VIIIGGGATGAGIARDCARRGLRTLLIERHDI 40
                89***************************985 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1.1
                 HHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  50 lekngievllntkveeiegsedgvesvkl 78 
                  +++g ++l++ +v+ +   +d v +v++
  CTQ29132.1 159 AREHGAQILTGCEVTGLLRRGDRVCGVQV 187
                 57889999999999998888888777776 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.9
                 SEEEEEESSSSSSTTSSHHHHHHHHHHHHH CS
   Pyr_redox  23 kkVtvversdkllrllDeeaskilqeklek 52 
                  ++t++ ++  ll  lD+ + +++ ++ +k
  CTQ29132.1 220 LRITMFPAKGSLL-ILDHRINNLVINRCRK 248
                 58999999*****.*******999888765 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.3   4.4e-05     0.053       1      30 [.       8      38 ..       8      56 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.4e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE.ES CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi.th 30
                +vi+iGgG  G   A  +ar+G+++lLi  h
  CTQ29132.1  8 EVIIIGGGATGAGIARDCARRGLRTLLIeRH 38
                59**************************533 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.8   5.2e-05     0.062       1      33 [.      10      41 ..      10      45 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.2e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnig 33
                 iIiG+G+ G ++a  + + gl + l +E++ i 
   CTQ29132.1 10 IIIGGGATGAGIARDCARRGL-RTLLIERHDIA 41
                 8********************.689****9886 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0049       5.8     192     213 ..       7      28 ..       3      39 .. 0.88
   2 ?    2.0   0.0     0.075        90     292     339 ..     161     208 ..     147     210 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0049
  K_oxygenase 192 kriaVvGsGqSaaeifedllrr 213
                   +++++G+G ++a i++d++rr
   CTQ29132.1   7 SEVIIIGGGATGAGIARDCARR 28 
                  579****************998 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.075
  K_oxygenase 292 eerlrllpnrevesaeaegkgeveltlrneesgeeetlevdavvlATG 339
                  e+ +++l+ +ev+++ ++g++ + +++ +++ ++++tl + +vv A G
   CTQ29132.1 161 EHGAQILTGCEVTGLLRRGDRVCGVQVYDRQLHQARTLYAGMVVNAAG 208
                  44699***************99************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3824.99
//
Query:       CTQ29133.1  [L=419]
Description: sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-51  173.8   0.0      7e-51  173.6   0.0    1.0  1  FAD_binding_2  FAD binding domain
    2.2e-07   30.8   2.6    7.6e-06   25.7   2.6    2.2  1  DAO            FAD dependent oxidoreductase
    7.2e-05   22.2   0.0    0.00018   20.9   0.1    1.6  2  FAD_binding_3  FAD binding domain
     0.0015   18.7   0.3     0.0015   18.7   0.3    2.1  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0021   17.4   0.3     0.0031   16.8   0.3    1.2  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0024   17.2   0.8     0.0036   16.6   0.0    1.7  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.005   16.0   0.1       0.16   11.0   0.2    2.1  2  GIDA           Glucose inhibited division protein A
      0.009   14.8   0.1      0.017   13.9   0.1    1.4  1  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
      0.014   14.5   0.1       0.67    8.9   0.2    2.1  2  Lycopene_cycl  Lycopene cyclase protein
      0.089   13.4   0.1       0.36   11.4   0.0    2.0  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.26   10.6   0.4       0.41    9.9   0.4    1.3  1  FAD_oxidored   FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.6   0.0   4.3e-54     7e-51       1     417 []       4     399 ..       4     399 .. 0.90

  Alignments for each domain:
  == domain 1  score: 173.6 bits;  conditional E-value: 4.3e-54
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S.-HHHHHHHHHTHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldela.dqplveafveaapeavde 95 
                    D  +iG+GlAGL ++l+++++Gl+ ++++ +q+   a+++s++++d+++  ++     +d ++  + + l++l+e+  ++p++++++ea+ +  ++
     CTQ29133.1   4 DCAIIGGGLAGLLCGLALNQHGLRSVIISRGQS---ALHFSSASLDLLSALPN-----GD-HVTDVAQGLQQLAEQLpEHPYSRLGAEAVLKYATQ 90 
                    779*****************************9...*************7777.....78.55555555666666666***************999 PP

                    HHHT....T----BCCTS.SB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEET.... CS
  FAD_binding_2  96 Leel....gvpfsrtedg.pvdvrelGglsatartlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenp.... 182
                     e+l    g+ ++++++  + +v++lG+l++ ++++ ++++a      + ++ + +++ ++     dfq++++a++L   + +vt a ve +    
     CTQ29133.1  91 TEALlaacGAVMQGDARRpHRRVTPLGTLRPAWLSPLEVPVA----PLPSQGACLVGISGF----ADFQPHLAAAAL--GQHGVTAAAVEIElpll 176
                    9999988877777755557********************999....679999999999***....9***********..446888888888888** PP

                    ....TTTCEEEEEES.EEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSS.EES..TT-EEEEEEEET....TTTBB--THHHH CS
  FAD_binding_2 183 ....esgrevrirak.avvlatgGfgrallkellgaaaeaettnapavtGdglalalragaa.lnddrmeevqfhPtslvpirdgsgiLitealrg 272
                        ++++e+r +++ +v++ +  ++ al   ll+ a++ + + +pa++G +++  l   ++     ++  ++++P+s++++r++s++  ++++  
     CTQ29133.1 177 dvlrDNPTEFRAANIaRVLDDENMWP-ALHAALLPLAQQYDLLIMPACFGLADD-RLYHWLQaRLPCPLRLLPTLPPSVPGMRLHSQL--QRQFIR 268
                    **************************.79999******************9887.5555555556689********************..****** PP

                    TT-EEE-.TTSSBTHGGGS-HHHHHHHHH.HHHHTTTSCCBEEEE-TT.SSHHHHHHHSHHHHHHHHHCCT......S-TTTSEEE.......EEE CS
  FAD_binding_2 273 eGgilvd.kdGrrFmnelasrdvvsrailekeiaeggseanvyldashgldaegleatleaineeaangldkdfgrgidpadrpipgpfyavkvvp 367
                    eGg ++  +++ +    ++ +d v + +++++ ++  + +++ ++as++++++gl+at++   +e++ gld +       ++ p  + +y+ ++++
     CTQ29133.1 269 EGGAWLAgDEVVK---ISHRQDAVEAVWTRNHGDIALR-PRFTVLASGSFFSNGLVATRDS-VREPILGLDLH-------QTLPR-ESWYQRDFFA 351
                    ******8666666...9999******************.**********************.9********33.......22222.58******** PP

                    EEEEES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 368 aqhytmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    +q+++ +Gv+td+ +r+   +gqp  +L+A+G  + gg++ ++ ++G ++
     CTQ29133.1 352 SQPWQRFGVKTDALLRP-LLGGQPFHNLFAIGSLL-GGFDAIQLGCGGGV 399
                    *****************.99***************.***********875 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   2.6   4.6e-09   7.6e-06       1     205 [.       4     316 ..       4     339 .. 0.55

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 4.6e-09
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEES..S... CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaa..d... 92 
                 d +iiGGG +Gl + ++L ++g   +++ +g + + + S+++  ll++    lp++    + + +  + l++l+e+  ++ +y r G   +    +   
  CTQ29133.1   4 DCAIIGGGLAGLLCGLALNQHGlrSVIISRG-QSALHFSSASLDLLSA----LPNG----DHVTDVAQGLQQLAEQ-LPEHPYSRLGAEAVLKyaTqte 92 
                 789****************************.7777**********99....6777....3444444444444443.2334577766544432112233 PP

                 .............................................................................HHHHHHHHHHHHHH...HHTTT CS
         DAO  93 .............................................................................eeelealdkllall...leagl 111
                                                                                              e el+ ld l +++   ++a++
  CTQ29133.1  93 allaacgavmqgdarrphrrvtplgtlrpawlsplevpvaplpsqgaclvgisgfadfqphlaaaalgqhgvtaaavEIELPLLDVLRDNPtefRAANI 191
                 344444444444444444444444444444455555555555555555555555555555555555555544444442223333344444433322222 PP

                 TEEEEEHHHHHHHSTTST...........TTSEEEEETTEEEEEHHHHHHH.......................................HHHHHHHTT CS
         DAO 112 daelldaeevrelepalp...........gllgalfypdtgqvdpakltaa.......................................laraaealG 160
                  a++ld e    ++pal+                l +p            a                                       l+r++ + G
  CTQ29133.1 192 -ARVLDDE---NMWPALHaallplaqqydL----LIMP------------AcfgladdrlyhwlqarlpcplrllptlppsvpgmrlhsqLQRQFIREG 270
                 .2455555...5555311112222211210....2233............2333333333333566666666666669999999999999999999999 PP

                 -EEEESECEEEEEEEETCEEEEEEECT.EEE..EEEEEEEE--GGGHH CS
         DAO 161 veilegtevtgleeedgkvwgverttp.gen..daadavVnaaGawsd 205
                 +  l g ev++++++++ v  v  t + g +  +  +  V+a G + +
  CTQ29133.1 271 GAWLAGDEVVKISHRQDAVEAV-WTRNhGDIalRP-RFTVLASGSFFS 316
                 9999999999998876666666.333336553234.669999998843 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   1.1e-07   0.00018       3      39 ..       4      40 ..       2      45 .. 0.87
   2 ?   -2.7   0.0       1.7   2.7e+03     117     161 ..     268     310 ..     247     313 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.1e-07
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvl 39
                   d +I+G+G+aGl+ +l L ++G r+v++ + +++   
     CTQ29133.1  4 DCAIIGGGLAGLLCGLALNQHGLRSVIISRGQSALHF 40
                   779**************************98887665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.7
                    HHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE- CS
  FAD_binding_3 117 erglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGa 161
                    ++g     + ev+ + + ++ v+a+ + +  g +  +r +++v a
     CTQ29133.1 268 REGGAWLAGDEVVKISHRQDAVEAVWTRNH-GDI-ALRPRFTVLA 310
                    555555667788888888899988887664.555.6777777765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.3   9.4e-07    0.0015       1      29 [.       7      35 ..       7      63 .. 0.90
   2 ?   -3.3   0.3         7   1.1e+04       3      17 ..     396     410 ..     395     412 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 9.4e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   I+G+Gl+Gl++  +L ++g++ +++ +++
     CTQ29133.1  7 IIGGGLAGLLCGLALNQHGLRSVIISRGQ 35
                   9*********************9998875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7
                    --SHHHHHHHHHHHC CS
  NAD_binding_8   3 GaGlsGlvaAylLak 17 
                    G+G+ + +a +++++
     CTQ29133.1 396 GGGVCAVTALHAARQ 410
                    888888888877765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   1.9e-06    0.0031       2      32 ..       7      36 ..       6      42 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.9e-06
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkgni 32
                 IiG+G aGl ++++l+++gl   +i+ +g+ 
   CTQ29133.1  7 IIGGGLAGLLCGLALNQHGLR-SVIISRGQS 36
                 9*******************5.689999975 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.2e-06    0.0036       2      38 ..       4      40 ..       3     106 .. 0.65
   2 ?   -3.9   0.2       3.7     6e+03     148     157 ..     395     404 ..     395     412 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.2e-06
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclng 38
                 d+++iGgG AGl + l l+q+g++ +++++++  l++
   CTQ29133.1  4 DCAIIGGGLAGLLCGLALNQHGLRSVIISRGQSALHF 40
                 899*************************544333333 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.7
                  ES-SHHHHHH CS
                  xxxxxxxxxx RF
  Pyr_redox_2 148 vGgGyiGvEl 157
                  +GgG+++v  
   CTQ29133.1 395 CGGGVCAVTA 404
                  6888888754 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.2   9.9e-05      0.16       1      28 [.       4      31 ..       4      64 .. 0.83
   2 ?    2.7   0.0     0.033        54     115     155 ..     276     318 ..     260     329 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.9e-05
                CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi 28
                d+ +iGgG+AG+ + la+ + G++ ++i
  CTQ29133.1  4 DCAIIGGGLAGLLCGLALNQHGLRSVII 31
                689********************99998 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.033
                 ES-EEEEEECTTEEEEEEETTS-EEEEC..EEEE--TT-BT-E CS
        GIDA 115 eeeveeliveekkvkgvvtedgetikak..avviatGtflkgk 155
                  +ev +++ +++ v++v t+++  i  +   +v+a+G+f +  
  CTQ29133.1 276 GDEVVKISHRQDAVEAVWTRNHGDIALRprFTVLASGSFFSNG 318
                 57999999999******9998766554444********76543 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1     1e-05     0.017       2      35 ..       4      37 ..       3      39 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakkl 35
                 d ++iGgG AGl++ ++++++g r +++ +++++
   CTQ29133.1  4 DCAIIGGGLAGLLCGLALNQHGLRSVIISRGQSA 37
                 789************************9998775 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2   0.00041      0.67       1      36 [.       4      37 ..       4      42 .. 0.90
   2 ?    3.4   0.0      0.02        33      87     144 ..     256     316 ..     251     341 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00041
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   D ++iG+G+Agl+    l  ++ gl+ v+i  ++s 
     CTQ29133.1  4 DCAIIGGGLAGLLCGLAL--NQHGLRSVIISRGQSA 37
                   889************999..99*****999888775 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.02
  Lycopene_cycl  87 krlkeellerlv.engvklleakvesveeeeageslvvl..eggrkirarlvvdarglasl 144
                     rl+++l+++++ e+g+ l    v ++ + +++   v +  +g+  +r r+ v a+g + +
     CTQ29133.1 256 MRLHSQLQRQFIrEGGAWLAGDEVVKISHRQDAVEAVWTrnHGDIALRPRFTVLASGSFFS 316
                    689*********9999999999********9955555441134449999****99997655 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00022      0.36       3      35 ..       6      38 ..       4      51 .. 0.88
   2 ?   -1.7   0.0       2.8   4.5e+03      46      77 ..     262     293 ..     257     297 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00022
                EEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  3 vvvGgGyiglElAgalaelgkkVtvversdkll 35
                +++GgG+ gl ++ al+++g +  ++ r+   l
  CTQ29133.1  6 AIIGGGLAGLLCGLALNQHGLRSVIISRGQSAL 38
                79*************************998877 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.8
                 HHHHHHHTTEEEECSEEEEEEEEETTSEEEEE CS
   Pyr_redox  46 lqeklekngievllntkveeiegsedgvesvk 77 
                 lq+++ ++g   l + +v++i + +d ve+v 
  CTQ29133.1 262 LQRQFIREGGAWLAGDEVVKISHRQDAVEAVW 293
                 66666677777778889999999999888875 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.4   0.00025      0.41       1      32 [.       4      35 ..       4      37 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00025
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveerg 32
                  D  ++GGg+aG+ + +a  ++G + +++++ +
    CTQ29133.1  4 DCAIIGGGLAGLLCGLALNQHGLRSVIISRGQ 35
                  789*************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3070.96
//
Query:       CTQ29134.1  [L=392]
Description: sn-glycerol-3-phosphate dehydrogenase (anaerobic), small subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-32  112.1   0.8    1.6e-16   60.3   0.1    2.4  2  CCG              Cysteine-rich domain
    2.3e-10   40.8   5.6    2.3e-10   40.8   5.6    2.0  2  Fer4_8           4Fe-4S dicluster domain
    5.8e-07   30.0   6.5    5.8e-07   30.0   6.5    2.3  2  Fer4_17          4Fe-4S dicluster domain
    1.2e-06   28.6  12.8     0.0014   18.7   0.4    3.1  3  Fer4_10          4Fe-4S dicluster domain
    2.5e-06   27.5  11.8    0.00085   19.4   1.2    3.0  3  Fer4_9           4Fe-4S dicluster domain
    4.5e-06   27.2   9.5    4.5e-06   27.2   9.5    2.3  2  Fer4_7           4Fe-4S dicluster domain
    0.00034   20.9  17.0     0.0042   17.5   1.5    3.2  3  Fer4_4           4Fe-4S binding domain
    0.00051   19.8  17.5     0.0033   17.2   2.6    2.9  2  Fer4             4Fe-4S binding domain
    0.00075   19.6  12.6      0.094   12.9   1.0    3.2  3  Fer4_21          4Fe-4S dicluster domain
     0.0057   17.6  13.4        0.1   13.5   0.6    2.8  2  Fer4_16          4Fe-4S double cluster binding domain
  ------ inclusion threshold ------
      0.016   15.3  18.7      0.059   13.5   1.5    3.2  3  Fer4_2           4Fe-4S binding domain
      0.051   13.7  21.5      0.052   13.7   3.9    2.8  2  Fer4_6           4Fe-4S binding domain
      0.099   13.5   9.8       0.76   10.7   0.7    2.8  3  Fer4_22          4Fe-4S dicluster domain
       0.11   12.3   7.4       0.26   11.1   0.2    2.6  2  Fer4_20          Dihydroprymidine dehydrogenase domain II, 4F
       0.23   11.7  10.0       0.43   10.8   0.2    2.7  2  Fer4_18          4Fe-4S dicluster domain
        1.1   10.3  16.9       0.45   11.6   4.1    2.9  2  Fer4_3           4Fe-4S binding domain
        1.4    9.0  10.4       0.28   11.2   1.5    2.9  2  TACI-CRD2        TACI, cysteine-rich domain
        3.6    8.2  16.0        2.8    8.6   0.3    3.0  2  Fer4_13          4Fe-4S single cluster domain of Ferredoxin I
        5.1    7.4   6.1         12    6.2   0.2    2.6  2  c-SKI_SMAD_bind  c-SKI Smad4 binding domain


Domain annotation for each model (and alignments):
>> CCG  Cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.1   1.7e-19   1.6e-16       1      85 []     163     245 ..     163     245 .. 0.98
   2 !   50.3   0.1   2.2e-16     2e-13       1      84 [.     289     372 ..     289     373 .. 0.85

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 1.7e-19
         CCG   1 vayfdgChllraaypevrkalkkllealgveleelekesCCGagggrsgkeelaealakrnvetaeetgadaivtacpgCllqlk 85 
                 va+f+gC ++++++p+++k l ++++alg+ ++ l+ke+CCG + + +g+ ++a++ a+ nv++++e +  +i++++++C ++l+
  CTQ29134.1 163 VAFFHGC-YVNYNHPQLGKDLIRVVNALGTGVQLLSKEKCCGVPLIANGFFDKARKQAQSNVAAMRE-NTLPIIATSSTCAFTLR 245
                 89*****.9**********************************************************.79***********9985 PP

  == domain 2  score: 50.3 bits;  conditional E-value: 2.2e-16
         CCG   1 vayfdgChllraa.ypevrkalkkllealgveleelekesCCGagggrsgkee...laealakrnvetaeetgadaivtacpgCllql 84 
                 v+y+++Ch+ ++  +  + ++l+ +++ l +e+    +++CCG +g++  k+e   +++a+++  ++++ee gad +vt c +C++q+
  CTQ29134.1 289 VVYHTPCHMEKMGwSLYTLELLRLIPG-LQLEVL---DSQCCGIAGTYGFKTEnyaVSQAIGAPLFRQIEESGADLVVTDCETCKWQI 372
                 79******9999966666666666644.344444...579***********88899*******************************8 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   5.6   2.4e-13   2.3e-10       2      65 .]       6      70 ..       5      70 .. 0.84
   2 ?   -2.3   0.0         7   6.6e+03      48      55 ..     362     369 ..     341     371 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 2.4e-13
      Fer4_8  2 lekCieCgaCqsaCpvlrrtkkhlldargeaaedvqeeqvlee..eealwsCttcgaCtevCpvgi 65
                +e+Ci+C  C+++Cpv r   + +  ++ +  + ++ + +  +  +eal++C +c++C+++Cp ++
  CTQ29134.1  6 FESCIKCTVCTTTCPVSRVNPRYPGPKQAGPDG-ERLRLKDGAlyDEALKYCINCKRCEVACPSDV 70
                689****************99999999999888.44444433367******************875 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7
      Fer4_8  48 lwsCttcg 55 
                 +  C tc+
  CTQ29134.1 362 VTDCETCK 369
                 56677775 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   6.5   6.2e-10   5.8e-07       2      60 ..       9      70 ..       8      71 .. 0.79
   2 ?   -1.5   0.1       4.2   3.9e+03      35      50 ..     351     369 ..     324     370 .. 0.53

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 6.2e-10
     Fer4_17  2 CiqCgyClpeCpsyeaydne...pk.kllraaklglleeaekeekaslCieCgeCerkCPqgl 60
                Ci+C  C+  Cp  + ++ +   ++  +  + +l l+++a  +e+ + Ci+C++Ce +CP+++
  CTQ29134.1  9 CIKCTVCTTTCPVSRVNPRYpgpKQaGPDGE-RLRLKDGALYDEALKYCINCKRCEVACPSDV 70
                ***************9888622122133333.66788888888*****************997 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.2
     Fer4_17  35 eeaeke...ekaslCieCg 50 
                 +++e++    ++ +C +C+
  CTQ29134.1 351 RQIEESgadLVVTDCETCK 369
                 3333332225677777775 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.1   6.3e-06    0.0059       7      25 ..       7      23 ..       3      43 .. 0.78
   2 !   18.7   0.4   1.5e-06    0.0014       7      24 ..      54      77 ..      49      95 .. 0.71
   3 ?   -0.3   0.4       1.3   1.2e+03      31      49 ..     350     369 ..     323     381 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.3e-06
     Fer4_10  7 dtCirCgkCvkaCPadlts 25
                ++Ci+C+ C++ CP+  ++
  CTQ29134.1  7 ESCIKCTVCTTTCPV--SR 23
                78************9..33 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.5e-06
     Fer4_10  7 dtCirCgkCvkaCPadl......t 24
                + Ci+C++C  aCP+d+      +
  CTQ29134.1 54 KYCINCKRCEVACPSDVkigdiiQ 77
                68*************775444321 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.3
     Fer4_10  31 easeeeavrk.kvekCtgcg 49 
                 ++ +ee   + +v +C++c 
  CTQ29134.1 350 FRQIEESGADlVVTDCETCK 369
                 55555555555788888884 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.7   4.3e-05     0.041      35      48 ..       8      21 ..       1      38 [. 0.66
   2 !   19.4   1.2     9e-07   0.00085       1      26 [.      55      80 ..      55      90 .. 0.84
   3 ?   -1.3   0.1       2.7   2.5e+03      38      42 ..     364     368 ..     341     381 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.3e-05
      Fer4_9 35 aCigCgaCveaCpk 48
                +Ci+C  C+  Cp 
  CTQ29134.1  8 SCIKCTVCTTTCPV 21
                46666666666654 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 9e-07
      Fer4_9  1 kCtgCgaCveaCpagvvvedaaerka 26
                +C++C++C+ aCp++v ++d  +r +
  CTQ29134.1 55 YCINCKRCEVACPSDVKIGDIIQRAR 80
                6***************9988777665 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.7
      Fer4_9  38 gCgaC 42 
                 +C++C
  CTQ29134.1 364 DCETC 368
                 33333 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   9.5   4.8e-09   4.5e-06       1      52 []       8      70 ..       8      70 .. 0.70
   2 ?   -1.4   0.1       3.9   3.6e+03      33      42 ..     360     369 ..     335     382 .. 0.67

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 4.8e-09
      Fer4_7  1 rCigCgaCvaaCpvkaieldeeenek....gt.......ekveidpekClgCgaCvavCPtga 52
                +Ci+C  C+ +Cpv+ ++ ++   ++    g        + ++    +C++C++C+ +CP+++
  CTQ29134.1  8 SCIKCTVCTTTCPVSRVNPRYPGPKQagpdGErlrlkdgALYDEALKYCINCKRCEVACPSDV 70
                5************99999986544332333213333222444677889************986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.9
      Fer4_7  33 idpekClgCg 42 
                 ++ ++C +C+
  CTQ29134.1 360 LVVTDCETCK 369
                 4555666663 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   2.8   0.00025      0.24       2      16 ..       7      21 ..       6      28 .. 0.92
   2 !   17.5   1.5   4.4e-06    0.0042       2      16 ..      54      68 ..      53      78 .. 0.91
   3 ?   -1.8   0.2       6.6   6.2e+03       6      11 ..     364     369 ..     363     370 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00025
      Fer4_4  2 erCigCgsCvaaCPq 16
                e+Ci C +C+ +CP+
  CTQ29134.1  7 ESCIKCTVCTTTCPV 21
                89************5 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 4.4e-06
      Fer4_4  2 erCigCgsCvaaCPq 16
                + Ci+C++C+ aCP+
  CTQ29134.1 54 KYCINCKRCEVACPS 68
                67************6 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 6.6
      Fer4_4   6 gCgsCv 11 
                 +C  C 
  CTQ29134.1 364 DCETCK 369
                 799995 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   2.2   0.00015      0.14       6      20 ..       7      21 ..       4      22 .. 0.92
   2 !   17.2   2.6   3.5e-06    0.0033       7      21 ..      55      69 ..      53      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
                TTSSS-THHHHHSTT CS
        Fer4  6 ekCigCGaCvevCPv 20
                e Ci+C  C   CPv
  CTQ29134.1  7 ESCIKCTVCTTTCPV 21
                89************8 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 3.5e-06
                TSSS-THHHHHSTTT CS
        Fer4  7 kCigCGaCvevCPvg 21
                 Ci+C++C+ +CP +
  CTQ29134.1 55 YCINCKRCEVACPSD 69
                6************98 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   2.5   0.00022      0.21      39      53 ..       7      21 ..       2      25 .. 0.70
   2 !   12.9   1.0   9.9e-05     0.094       7      20 ..      55      68 ..      50      87 .. 0.79
   3 ?   -2.8   0.0       7.9   7.5e+03      39      44 ..     363     368 ..     343     373 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00022
     Fer4_21 39 deCvGCnlCssvCPv 53
                ++C+ C++C++ CPv
  CTQ29134.1  7 ESCIKCTVCTTTCPV 21
                567777777777777 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 9.9e-05
     Fer4_21  7 kCigCgkCliaCed 20
                 Ci+C++C +aC+ 
  CTQ29134.1 55 YCINCKRCEVACPS 68
                6***********95 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 7.9
     Fer4_21  39 deCvGC 44 
                  +C  C
  CTQ29134.1 363 TDCETC 368
                 445444 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   2.8    0.0007      0.66       2      18 ..       9      25 ..       8      37 .. 0.86
   2 !   13.5   0.6   0.00011       0.1       2      16 ..      56      70 ..      55      95 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0007
     Fer4_16  2 CgtCgkCaevCPtnaik 18
                C++C+ C+ +CP++ ++
  CTQ29134.1  9 CIKCTVCTTTCPVSRVN 25
                ************98766 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 0.00011
     Fer4_16  2 CgtCgkCaevCPtna 16
                C++C++C  +CP+++
  CTQ29134.1 56 CINCKRCEVACPSDV 70
                ************986 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.1   0.00096      0.91       8      21 ..       7      20 ..       5      21 .. 0.92
   2 ?   13.5   1.5   6.3e-05     0.059      10      21 ..      56      67 ..      48      68 .. 0.91
   3 ?   -1.1   0.2       2.7   2.6e+03       6      10 ..     364     368 ..     360     370 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00096
      Fer4_2  8 drCigCgaCvsaCP 21
                ++Ci C  C++ CP
  CTQ29134.1  7 ESCIKCTVCTTTCP 20
                78************ PP

  == domain 2  score: 13.5 bits;  conditional E-value: 6.3e-05
      Fer4_2 10 CigCgaCvsaCP 21
                Ci+C+ C  aCP
  CTQ29134.1 56 CINCKRCEVACP 67
                ************ PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.7
      Fer4_2   6 dtdrC 10 
                 d+++C
  CTQ29134.1 364 DCETC 368
                 44444 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.5   0.00035      0.33       7      21 ..       7      21 ..       7      24 .. 0.90
   2 ?   13.7   3.9   5.5e-05     0.052       9      22 ..      56      69 ..      54      72 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00035
      Fer4_6  7 dkCigCgdCvrvCPe 21
                ++Ci C  C++ CP 
  CTQ29134.1  7 ESCIKCTVCTTTCPV 21
                68************7 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 5.5e-05
      Fer4_6  9 CigCgdCvrvCPeg 22
                Ci C +C+++CP +
  CTQ29134.1 56 CINCKRCEVACPSD 69
                ************75 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.7    0.0008      0.76       2      39 ..       9      46 ..       8      53 .. 0.74
   2 ?    6.9   2.1     0.012        11      81      94 ..      55      68 ..      44      70 .. 0.74
   3 ?    5.4   2.8     0.035        33       2      14 ..      56      68 ..      55      86 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0008
     Fer4_22  2 ClsCgaCtlvCptCsCfdvedetkeeskegervrvwds 39
                C++C+ Ct++Cp           k++  +ger+r  d 
  CTQ29134.1  9 CIKCTVCTTTCPVSRVNPRYPGPKQAGPDGERLRLKDG 46
                ***********987766666655666777777777665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.012
     Fer4_22 81 gCvGCgRCieacpv 94
                 C+ C RC+ acp+
  CTQ29134.1 55 YCINCKRCEVACPS 68
                67777777777776 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.035
     Fer4_22  2 ClsCgaCtlvCpt 14
                C++C +C ++Cp+
  CTQ29134.1 56 CINCKRCEVACPS 68
                6666666666664 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   2.7     0.096        91      23      43 ..       8      26 ..       4      29 .. 0.82
   2 ?   11.1   0.2   0.00027      0.26      19      51 ..      50      81 ..      39      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.096
                T----TT-HHHHCSTT---HH CS
     Fer4_20 23 RClqCkkapcvkgCPveidip 43
                 C++C  + c+++CPv+   p
  CTQ29134.1  8 SCIKC--TVCTTTCPVSRVNP 26
                59999..89*******87655 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00027
                HHH.TT----TT-HHHHCSTT---HHHHHHHHHT CS
     Fer4_20 19 eeA.sRClqCkkapcvkgCPveidipefikkiae 51
                +eA + C++C  + c+ +CP +++i + i++ ++
  CTQ29134.1 50 DEAlKYCINC--KRCEVACPSDVKIGDIIQRARA 81
                555356****..78*************9998765 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   1.7     0.013        12      58      73 ..       6      21 ..       1      27 [. 0.84
   2 ?   10.8   0.2   0.00045      0.43      56      82 ..      51      77 ..      31      85 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.013
     Fer4_18 58 agdcidcescvkvcPt 73
                   ci+c +c + cP+
  CTQ29134.1  6 FESCIKCTVCTTTCPV 21
                568***********97 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00045
     Fer4_18 56 kgagdcidcescvkvcPtgidirkGlq 82
                ++   ci+c+ c   cP ++ i + +q
  CTQ29134.1 51 EALKYCINCKRCEVACPSDVKIGDIIQ 77
                55678***************9988776 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   4.9      0.19   1.8e+02       1      13 [.       9      21 ..       9      23 .. 0.94
   2 ?   11.6   4.1   0.00048      0.45       1      14 [.      56      69 ..      56      70 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.19
      Fer4_3  1 CtgCgaCvevCPv 13
                C+ C  C   CPv
  CTQ29134.1  9 CIKCTVCTTTCPV 21
                ************7 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00048
      Fer4_3  1 CtgCgaCvevCPvg 14
                C++C +C+++CP++
  CTQ29134.1 56 CINCKRCEVACPSD 69
                ************86 PP

>> TACI-CRD2  TACI, cysteine-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   1.9      0.39   3.6e+02      15      26 ..       6      16 ..       2      20 .. 0.68
   2 ?   11.2   1.5    0.0003      0.28       6      22 ..      44      60 ..      42      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.39
   TACI-CRD2 15 lrdCisCssiCG 26
                   Ci+C+ +C+
  CTQ29134.1  6 FESCIKCT-VCT 16
                56899995.554 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.0003
   TACI-CRD2  6 eqGrYYDeLlrdCisCs 22
                + G  YDe l+ Ci+C+
  CTQ29134.1 44 KDGALYDEALKYCINCK 60
                57999***********7 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.7    0.0039       3.7       4      17 ..       7      20 ..       6      22 .. 0.93
   2 ?    8.6   0.3    0.0029       2.8       6      38 ..      56      88 ..      53      97 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0039
     Fer4_13  4 dtCiacgaCvelaP 17
                ++Ci c++C  ++P
  CTQ29134.1  7 ESCIKCTVCTTTCP 20
                68***********9 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0029
     Fer4_13  6 CiacgaCvelaPdvFeeddeggasvvaeqptse 38
                Ci+c+ C  ++P   ++ d  ++++ + +++++
  CTQ29134.1 56 CINCKRCEVACPSDVKIGDIIQRARAQYGQQKP 88
                ************866666666655555555555 PP

>> c-SKI_SMAD_bind  c-SKI Smad4 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   1.6      0.17   1.6e+02      26      38 ..       7      19 ..       2      24 .. 0.80
   2 ?    6.2   0.2     0.012        12      19      39 ..      47      67 ..      43      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.17
  c-SKI_SMAD_bind 26 akCikCleCkllf 38
                      +CikC+ C+++ 
       CTQ29134.1  7 ESCIKCTVCTTTC 19
                     68*******9865 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.012
  c-SKI_SMAD_bind 19 elyssseakCikCleCkllfs 39
                     +ly +    Ci+C++C++   
       CTQ29134.1 47 ALYDEALKYCINCKRCEVACP 67
                     57999999********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2900.97
//
Query:       CTQ29135.1  [L=273]
Description: putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid-like aldolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-65  220.8   0.0    1.3e-65  220.6   0.0    1.0  1  HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.6   0.0   7.3e-70   1.3e-65       1     219 [.      25     250 ..      25     252 .. 0.99

  Alignments for each domain:
  == domain 1  score: 220.6 bits;  conditional E-value: 7.3e-70
                 EEEEEEESTSHHHHHHHCTC--SEEEEESSTSSSHHHHHHHHHHHHHHHHHHHHCTTTSSEEEEE-SSTTHHHHHHHGGHHHTTSSEEEESS--SHHHH CS
   HpcH_HpaI   1 riglflpganaalaekaaiagaDsvliDlEdavalaeKdaARvlvsealkqldalaaaasevvVRvnsldselikqdlevldlgaqvvlvPkvetaeea 99 
                 +igl+l+++++++ae+aa++g+D++liD+E+a+         ++++++++ql+a+a +as++v+R+ + +  likq   vld+ga ++lvP+v+tae+a
  CTQ29135.1  25 QIGLWLSSTSSYMAEIAATSGYDWLLIDGEHAP---------NTIQDLYHQLQAIAPYASQPVIRPVEGNRSLIKQ---VLDIGARTLLVPMVDTAEQA 111
                 79*******************************.........**********************************...******************** PP

                 HHHHHHTSHTTTS---....................HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTT-TTSTTSHHHH....HHHH CS
   HpcH_HpaI 100 levvsalrepekgirg....................anketrllaqiEsaegvknaeeIaavegldgvflGaeDlsadlgtkrspegtevl....dare 174
                 +evvsa+r+p+ g rg                    an+e++ll+q+Es+++++n+++I++v+g+dgvf+G++Dlsa+lg+ +++++++v+    ++++
  CTQ29135.1 112 REVVSATRYPPIGSRGvgagvaraarwgrvenymaeANDELCLLIQVESRTALENLDAILEVDGIDGVFIGPADLSASLGYPDDAGHPDVQrvieQSIR 210
                 *******************************************************************************************9999999* PP

                 HHHHTTHCEEEEEEE.E-SSHHHHHHHHHTTHCEEEEEEHHHHHH CS
   HpcH_HpaI 175 riltaaraagiaaldtvasdiddaegflaegalfvalGfdgklli 219
                 ri++a++aag+     +a+d  +ae++la+ga+fva+G+d++l+ 
  CTQ29135.1 211 RIRAAGKAAGF-----LAVDPAMAEKCLAWGANFVAVGVDTMLYT 250
                 ***********.....*************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2272.64
//
Query:       CTQ29136.1  [L=430]
Description: putative carboxylate transporter; phthalate permease family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-45  155.7  42.1    1.5e-45  155.7  42.1    1.5  2  MFS_1          Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.2    7.9   3.8        2.3    6.9   3.8    1.5  1  O-antigen_lig  O-antigen ligase like membrane protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.7  42.1   1.7e-49   1.5e-45       3     353 .]      24     382 ..      22     382 .. 0.90
   2 ?   -2.9   0.5      0.27   2.4e+03     287     296 ..     401     410 ..     390     425 .. 0.39

  Alignments for each domain:
  == domain 1  score: 155.7 bits;  conditional E-value: 1.7e-49
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgag 100
                  +++l++l+rs++g+a   +++ d g+s  ++ l ++++++++a++ +p+  l+ +fG+rr++ ++ ll+++ ++++++a      +l++r l G++++
  CTQ29136.1  24 ALYVLAFLDRSNIGFAKE-TYQLDTGLSNEAYALGAGIFFVVYAFLGVPANLLMRKFGARRWIGCTTLLWGVLSAAMAWA-DTEaKFLLVRTLLGAAEA 120
                 6799*************9.9*****************************************9999999999996777775.33334************* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee..... 188
                 ++fp++++l+++wfp+++r++ +gl+++g+ l+  lg +l+g+l++  g      W ++f+i +++++ a+ +  ++ +++ p+++r+ ++ e+     
  CTQ29136.1 121 GFFPGMIYLTSQWFPQQNRASIMGLFYMGAPLALTLGSPLSGALLEMHGfmghpgWFWMFVIEGLLAVAAGAFT-FFWLDDSPQHARFLSAAEKqalis 218
                 *********************************************9999*********************9964.555577777777777777669999 PP

       MFS_1 189 ..kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrrrlllallll 284
                   ++ +++++++ ++  l++  +w l ++ l++ ++++gl ++lp+ +   lg + g + a+++ a+++++++++  l+ r+sdr+g   r+++a l l
  CTQ29136.1 219 elAREEEKKIASRLSDALRNGRVWQLALIYLTIQVAVYGLIFFLPTQVAALLGTKvG-FVASVVTAIPWVAALFGTWLIPRYSDRTGE--RRNIAALTL 314
                 9977777777778***********66666666666***********66777777799.888889*********************999..999999999 PP

       MFS_1 285 llaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 l+aa+g+a+ ++   +vl++++l ++ +g+  v+p ++++ ++l++  + ++ +g++n++g++gg+l+p
  CTQ29136.1 315 LAAAVGIAVSGLV-APVLAIIALCVAAVGVIAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAIGGFLAP 382
                 99*******9999.89999999999999***************************************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.27
       MFS_1 287 aalglallav 296
                 +++g+a+++v
  CTQ29136.1 401 TLAGVAIVGV 410
                 1111111111 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.8   0.00026       2.3     195     247 ..     254     307 ..     242     349 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00026
  O-antigen_lig 195 ikfiiillllillllllGTKvalfGliiiliialilllik.lilkkkklkkkkl 247
                     ++ +i++l + +  llGTKv+++++++++i  +++l+   li + +       
     CTQ29136.1 254 AVYGLIFFLPTQVAALLGTKVGFVASVVTAIPWVAALFGTwLIPRYSDRTGERR 307
                    6788999999999*****************999999988866655555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3005.92
//
Query:       CTQ29137.1  [L=401]
Description: putative epimerase/enolase/dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-38  132.7   0.0    1.7e-38  132.4   0.0    1.1  1  MR_MLE_C  Enolase C-terminal domain-like
    2.3e-08   34.3   0.0    3.7e-08   33.6   0.0    1.3  1  MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   0.0     2e-42   1.7e-38      14     219 ..     180     392 ..     171     393 .. 0.91

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 2e-42
                 T-SEEEEETSSS......HHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESSSSTTTHHHHHHHHHHHH..SSEEEES CS
    MR_MLE_C  14 gfravKlkvggd......dvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEPvppeddleglaelrara..sipiaag 104
                 gf + K+  +++       +++dv+ v+ +re +gp  d+ lm+D+  + d++ A ++a+++++++l w+EE +pp +++eg++el+++a  ++ +  g
  CTQ29137.1 180 GFIGGKMPTHWGphdgdaGIRKDVAMVADMREKCGP--DFWLMLDCWMSQDVNYATKLAHACAPYNLKWIEECLPP-QQYEGYRELKRQApaGMMVTSG 275
                 5666666555556688889***************77..77************************************.67********855689****** PP

                 TTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCSSHHHHHHHHHHHHTTTTBEEEEEEGGGGH......TSGCSBSSSS CS
    MR_MLE_C 105 EslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgsgglglaaslhlaaaipnllileyfldael......leeelleepl 197
                 E+  +++ fr l e+ ++di+qpdv+++gG+t ++++aa+a+a+g  v+pH+     + ++s h  ++  n+ + e  + +++      + + +l +++
  CTQ29137.1 276 EHHGTLQSFRTLSET-GIDIMQPDVGWCGGLTTLVEIAAIAKARGQLVVPHG-----SSVYSHHAVITFTNTPFSEFLMTSPDcatlrpQFDPILLGEP 368
                 ***********9665.5***********************************.....679********************9999**999999999999* PP

                 EEETTEEE..CTSSSBTSSEB-HH CS
    MR_MLE_C 198 evedGrvt..vpdgpGlGveldee 219
                 ++e Gr++  v d+pG+Gvel+++
  CTQ29137.1 369 VPERGRIHksVLDKPGFGVELNRD 392
                 *****9997799*********975 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   4.1e-12   3.7e-08      30     117 .]      67     157 ..      56     157 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 4.1e-12
                 EEEEEECTTEEEEEEEE-STTGHHHHHHHHHHHHHHHHTTSBTTHHHHHHHHHHHHCSS.......CHHHHHHHHHHHHHHHHHHTTSBHHHHTT CS
    MR_MLE_N  30 lvkietseGvvGigeatsvggraetikaelddhlapllvgkdaanisdlaqllkravlg.......nmsAkaaidmAlwDlkakalnlpladLlG 117
                 +v++e+++G +G    t+ g   e    ++++hl   + gk  + i+ +   +  a l+        m  ++ +d AlwDl +k+ +lp+++LlG
  CTQ29137.1  67 IVEVEADNGQTGFAVSTA-G---EMGCFIVEKHLNRFIEGKCVSDIKLIHDQMLNATLYyagsgglVMNSISCVDLALWDLFGKVVGLPVYKLLG 157
                 899999999999865443.4...567899************************99999999*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3078.77
//
Query:       CTQ29138.1  [L=261]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-39  134.6   0.0    2.2e-39  134.2   0.0    1.2  1  IclR             Bacterial transcriptional regulator
      2e-07   30.7   0.1    1.1e-06   28.3   0.0    2.2  2  HTH_IclR         IclR helix-turn-helix domain
     0.0081   16.0   0.0      0.024   14.5   0.0    1.8  1  MarR_2           MarR family
     0.0087   15.9   0.0       0.06   13.2   0.0    2.3  2  HTH_5            Bacterial regulatory protein, arsR family
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.032   14.1   0.0    1.6  1  TrmB             Sugar-specific transcriptional regulator Trm
      0.015   15.6   0.0      0.035   14.5   0.0    1.6  1  Penicillinase_R  Penicillinase repressor
      0.037   13.8   0.0      0.072   12.9   0.0    1.4  1  DUF742           Protein of unknown function (DUF742)


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.0   8.6e-43   2.2e-39       2     128 ..     122     247 ..     121     248 .. 0.98

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 8.6e-43
                 SEEETTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEE CS
        IclR   2 rlravsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvs 100
                 +++++s+ G++l ly ++iGK+lLa++++ ++ +++e l+++r t++Titd ++L+eeL ++R++G+++d++E++ +vrc+Aap+f+a+++ +aA+sv+
  CTQ29138.1 122 TISVRSHEGKSLSLYRSGIGKCLLAWQPASVQASIIEDLQWERATPTTITDAQQLREELGRIRARGWSFDNGEDYPDVRCVAAPVFNANNDLTAAISVV 220
                 57899********************************************************************************************** PP

                 EETTTSHHHHHHHHHHHHHHHHHHHHHH CS
        IclR 101 gptarlteeelkeellalvreaArkisr 128
                 g++ +++e++ ++ l+ + +++A++isr
  CTQ29138.1 221 GTRLQINEDNRDY-LAGKAIACAKDISR 247
                 *************.************97 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   4.3e-10   1.1e-06       1      48 [.       9      55 ..       9      58 .. 0.94
   2 ?   -1.3   0.0      0.75   1.9e+03      15      29 ..      85      98 ..      73      99 .. 0.59

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 4.3e-10
                HHHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR  1 sldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyv 48
                +l+Ra++iL+++++ ++  + + + +++g+pkStv+ lL  L +++++
  CTQ29138.1  9 ALTRAIEILNLIGRIGPC-SAATIIAELGIPKSTVYLLLGELKKQRFI 55
                799**************6.***********************999997 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.75
                TBSS-BHHHHHHHHT CS
    HTH_IclR 15 apqeltlselArrtg 29
                 +++ +l+ l +++g
  CTQ29138.1 85 LARP-RLTRLMDECG 98
                3343.5666666665 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   9.5e-06     0.024       9      51 ..      15      55 ..      11      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.5e-06
                HHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2  9 rvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLv 51
                 +L+ +gr ++  ++++ + ++lg++ks+v  +l +L ++ ++
  CTQ29138.1 15 EILNLIGRIGP--CSAATIIAELGIPKSTVYLLLGELKKQRFI 55
                589999***99..*****************9999999999887 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.4e-05      0.06       5      45 ..      14      55 ..      12      56 .. 0.91
   2 ?   -1.2   0.0      0.77     2e+03      16      26 ..     240     250 ..     232     252 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.4e-05
                HHHHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  5 lkILklLae.gelcvcelaeelglsqstvShHLkkLreaGLV 45
                ++IL+l  + g++++  + +elg+++stv   L  L++++++
  CTQ29138.1 14 IEILNLIGRiGPCSAATIIAELGIPKSTVYLLLGELKKQRFI 55
                69*****99********************9888888888877 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.77
                 EEHHHHHHHHT CS
       HTH_5  16 lcvcelaeelg 26 
                 +c+ ++++ lg
  CTQ29138.1 240 ACAKDISRLLG 250
                 799****9997 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.3e-05     0.032      21      52 ..      24      55 ..      17      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.3e-05
                CCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSE CS
        TrmB 21 gpatadeiaeelgvprskvYevLrsLedkGlV 52
                gp +a +i  elg+p+s+vY  L +L++  ++
  CTQ29138.1 24 GPCSAATIIAELGIPKSTVYLLLGELKKQRFI 55
                788999********************998776 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.4e-05     0.035       7      67 ..      15      71 ..      12      84 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.4e-05
                     HHHHHHHHHS-EEHHHHHHT--GGG---HHHHHHHHHHHHHTTS-EEEEETTEEEEE---- CS
  Penicillinase_R  7 evmeilwekgeatvkevveeleeekelaysTVktllrrLvkKgllsrekegrafiYsplvs 67
                     e+++++ + g+++++ +++el  +    +sTV  ll+ L k+ ++s +++ +  +++ lv+
       CTQ29138.1 15 EILNLIGRIGPCSAATIIAELGIP----KSTVYLLLGELKKQRFISMDNQDNYCLWTKLVE 71
                     8999999***************99....************************999998876 PP

>> DUF742  Protein of unknown function (DUF742)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.8e-05     0.072      46      87 ..      14      57 ..       4      64 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.8e-05
      DUF742 46 railrLcre..plsVaelaAelklPvgvvrvLlsdLldaglltv 87
                 +il+L+ +  p s a + Ael +P ++v  Ll++L ++  +++
  CTQ29138.1 14 IEILNLIGRigPCSAATIIAELGIPKSTVYLLLGELKKQRFISM 57
                6899999988899***********************99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1885.99
//
Query:       CTQ29139.1  [L=398]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-32  112.7   0.0    2.5e-31  108.3   0.0    2.2  2  MoCF_biosynth    Probable molybdopterin binding domain
     0.0019   18.6   2.1       0.04   14.4   0.8    2.3  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
     0.0047   17.0   0.0      0.017   15.3   0.0    1.9  2  CinA_KH          Damage-inducible protein CinA KH domain
     0.0069   16.0   0.5          2    8.0   0.0    2.6  3  CinA             Competence-damaged protein


Domain annotation for each model (and alignments):
>> MoCF_biosynth  Probable molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.0   5.5e-35   2.5e-31       2     143 ..       6     170 ..       5     171 .. 0.96
   2 ?    2.3   0.0     0.027   1.2e+02      20      55 ..     279     314 ..     244     320 .. 0.86

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 5.5e-35
                    EEEE-HHHHTTSSGBHHHHHHHHHHHTTSEEEEEEEEE-SSHHHHHHHHHHHHHTSSEEEEESS-SSSTT--HHHHHHHHHSEE-HHHHHHHHHHH CS
  MoCF_biosynth   2 vitvGdellsgkieDtngpllaellkelgvevskytvvpDdeeeikeallaaleeadviittGGtGptpdDvtpealaklfekelegfeeafrrvs 97 
                    ++++Gde+l+g+i+Dtn+++la+ ++++g+ + ++ +v+Dd +++++ l++  e+adv+i+ GG+Gpt+dD+   a a + ++ l +++e+++ ++
     CTQ29139.1   6 MLSTGDEVLHGQIVDTNAAWLADFFFNQGLPLTRRNTVGDDLDALVAILRERSEQADVLIVNGGLGPTSDDLSALAAATAKGEGLILHPEWLETMT 101
                    79***********************************************8887999**************************************** PP

                    HHHCC........................TTSHGGGGGGE.EETTEEEEE-SSHHHHHHHHHHHHHGGHH CS
  MoCF_biosynth  98 lkpgk........................pvgvapgailsravgktiigLPGspkavkealeeillpale 143
                    +++ +                        pvg+a+g+ ++ + +  +++ PG+p+++k+++e  +lp+l+
     CTQ29139.1 102 RFFAErgrpmaesnrkqaeipasaeminnPVGTACGFAIQLN-RCLMFFTPGVPSEFKVMVEQEILPRLR 170
                    ***99*******************************999754.55699****************99*997 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.027
                    HHHHHHHHTTSEEEEEEEEE-SSHHHHHHHHHHHHH CS
  MoCF_biosynth  20 pllaellkelgvevskytvvpDdeeeikeallaale 55 
                     lla +l+++g+ + + +vvp +ee +++a + a+e
     CTQ29139.1 279 GLLALQLSRAGAPLLASEVVPAQEETLAQAARWAAE 314
                    578889999********************9944433 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.022        98      59     102 ..      46      93 ..      22     123 .. 0.66
   2 !   14.4   0.8   8.8e-06      0.04      61     145 ..     257     336 ..     204     379 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.022
  Glyco_trans_4_4  59 alralrrllrqrrerpdvvhahspt...ag.laarlarrrrgiplvvt 102
                       l al ++lr r+e+ dv+++++ +   +  l a++a+ ++g  l+++
       CTQ29139.1  46 DLDALVAILRERSEQADVLIVNGGLgptSDdLSALAAATAKGEGLILH 93 
                      456677777889*********994423433344444443445555555 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 8.8e-06
  Glyco_trans_4_4  61 ralrrllrqrrerpdvvhahsptaglaarlarrrrgiplvvtlhglllrrgsgavrrlyralerrllrradavlvvseaeaeelr 145
                      ++ +r l  ++++  +  ++++t+gl+a++++ r+g+pl+ +     ++++ + ++++++a+err+ + a + l+vs +e ++l 
       CTQ29139.1 257 AQIARCL--QERQLSLTLSEQFTSGLLALQLS-RAGAPLLASEVV--PAQEETLAQAARWAAERRINHFAGLALAVSGQENDHLN 336
                      4556666..6777777778889**********.*******98876..455566777777778******************99986 PP

>> CinA_KH  Damage-inducible protein CinA KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.7e-06     0.017       5      59 ..     185     239 ..     183     247 .. 0.90
   2 ?   -3.6   0.0       2.9   1.3e+04      28      47 ..     336     355 ..     330     365 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.7e-06
                 EE-S--HHHHHHHHGGGS-BSSSEEEEEEETTEEEEEEE...EEHHHHHHHHH.. CS
     CinA_KH   5 ktfGigESavaekladlidrenptlAiyakegevtvRltakaaneeeaealiapv 59 
                  tfG +ES++a+ l++l+      +++  +   ++++lt  a+++++  al  +v
  CTQ29139.1 185 TTFGRSESELAQSLNPLTLPPGVVMGYRSSMPIIELKLTGPANQRDAMLALWPEV 239
                 69*****************************************999988887654 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.9
                 EEEEEEETTEEEEEEE...E CS
     CinA_KH  28 tlAiyakegevtvRltakaa 47 
                  +A+   +g   +R+  +a 
  CTQ29139.1 336 NVALATPDGTFALRVKFSAT 355
                 56666667777777776654 PP

>> CinA  Competence-damaged protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.9   8.5e+03      55      88 ..      85     118 ..      83     120 .. 0.79
   2 !    8.0   0.0   0.00044         2       4      35 ..     255     286 ..     252     291 .. 0.89
   3 !    5.7   0.1    0.0022       9.7     115     153 ..     335     376 ..     308     378 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.9
        CinA  55 aKeelLgvseetleehgavSeevaeemaegarer 88 
                 aK e L +++e le+++   +e  + mae  r++
  CTQ29139.1  85 AKGEGLILHPEWLETMTRFFAERGRPMAESNRKQ 118
                 6777788888999999988888889999887776 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00044
        CinA   4 laeevvkllkkkgltlatAEScTGGllaaalt 35 
                 l +++++ l++++l+l++ E +T Glla +l 
  CTQ29139.1 255 LPAQIARCLQERQLSLTLSEQFTSGLLALQLS 286
                 678999**********************9986 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0022
        CinA 115 vyialagkggveveklefegdree..irea.avkaALellre 153
                   +ala+++g+++ +++f+ +r++  +r++ +++ AL++lr+
  CTQ29139.1 335 LNVALATPDGTFALRVKFSATRHSlaVRQEvCAMMALNMLRR 376
                 5699****************9997556766156789**9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3031.28
//
Query:       CTQ29140.1  [L=180]
Description: putative outer membrane porin protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-77  259.4   4.3    1.6e-77  259.2   4.3    1.0  1  YfaZ           YfaZ precursor
     0.0003   20.1   0.0     0.0003   20.1   0.0    1.1  1  LptD           LPS transport system D
  ------ inclusion threshold ------
      0.012   15.8  11.8      0.076   13.1  11.8    2.5  1  OMP_b-brl      Outer membrane protein beta-barrel domain
      0.017   14.8   0.1        0.4   10.4   0.0    2.3  2  OmpA_membrane  OmpA-like transmembrane domain
       0.03   13.5   0.1      0.033   13.4   0.1    1.2  1  BBP2           Putative beta-barrel porin-2, OmpL-like. bbp2
      0.085   13.1   0.2       0.15   12.3   0.2    1.4  1  Alpha-amyl_C2  Alpha-amylase C-terminal beta-sheet domain
        3.4    7.4   4.0         64    3.3   2.6    2.6  2  OEP            Outer membrane efflux protein


Domain annotation for each model (and alignments):
>> YfaZ  YfaZ precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.2   4.3   6.2e-81   1.6e-77       1     180 []       1     180 []       1     180 [] 0.98

  Alignments for each domain:
  == domain 1  score: 259.2 bits;  conditional E-value: 6.2e-81
        YfaZ   1 mkkirlasvaslllvaasvnavsfnaelgkeytnlglglgtntdglavsGnyirsDddGdvagvglglnlpvGpltatvGakgvylsadegdeGsavav 99 
                 mkk  + ++a++++v++ + a+s+ +e+g++ytnlg+g+gt+ +glavsGn+ +sD+dGd ag+glgln p+Gp+ atvG+kg+y+++++gdeG+a+av
  CTQ29140.1   1 MKKSIFMALAGVMMVSSAAHAISVTGEAGEHYTNLGVGFGTESTGLAVSGNWLHSDNDGDAAGLGLGLNIPLGPFLATVGGKGIYTNPKQGDEGYAAAV 99 
                 7787888899***************************************************************************************** PP

        YfaZ 100 GgglalaigksfslfgeayyaPeeLssGvdsyeeansgvrynilrplalevGyryinlegkdgarDnalaDGayiGaklrf 180
                 Gggl+++ig+sf+l+g++yy+P++LssG+dsy+ean g+ ++i+rpl++++Gyry+nl gkdg+rDn++aDG+yiGa ++f
  CTQ29140.1 100 GGGLQWKIGDSFRLYGDYYYSPDSLSSGIDSYQEANVGASWTIMRPLSIQAGYRYLNLAGKDGNRDNTIADGPYIGASASF 180
                 ******************************************************************************998 PP

>> LptD  LPS transport system D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.2e-07    0.0003     304     370 ..      96     167 ..      46     180 .] 0.82

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.2e-07
                 EEEEEEEEEEEECTTEEEEEEEEEETTT.....TEEEEEEEEEEEESSTTSEEEEEEEEE-HHCCCHCTTCC CS
        LptD 304 ksdlvaeldfrpndglslssriqydpyt.....seferaevslsykpergksislgYryrredpeynrstnn 370
                   ++ + l++++ d ++l++++ y+p++     ++ ++a+v++s++  r  si++gYry +   ++++ +n+
  CTQ29140.1  96 AAAVGGGLQWKIGDSFRLYGDYYYSPDSlssgiDSYQEANVGASWTIMRPLSIQAGYRYLNLAGKDGNRDNT 167
                 55667889******************9833333456999**********************99999998775 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1  11.8     3e-05     0.076       2     174 ..       8     176 ..       7     180 .] 0.65

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3e-05
   OMP_b-brl   2 allllaalsaaaaa......assf.ggfyvggglglskvkvdgv..gsd.sgfgfgvgagyef.ndnvgvegglsysgdkdysgsgktdikinllsvpv 89 
                 al+ ++++s aa a      a+++ ++ +vg g  ++ + v+g+  +sd +g++ g+g+g ++   ++    g     ++ ++g        + ++  v
  CTQ29140.1   8 ALAGVMMVSSAAHAisvtgeAGEHyTNLGVGFGTESTGLAVSGNwlHSDnDGDAAGLGLGLNIpLGPFLATVGGKGIYTNPKQG-------DEGYAAAV 99 
                 677778888777778898764432244445555555566667777855525788888888877433443333333333333333.......36677888 PP

   OMP_b-brl  90 nagyafnlsdsvlpyggaGlgytkvevdvsgngasdsdtdfglglgaGveyaladnwslkaeYrytdlksdadndlkn..ntfqvgv 174
                   g++  ++ds+++yg + ++         +    +s+ d+   + +G+   +   +s++a+Yry +l   ++n +++  ++  +g+
  CTQ29140.1 100 GGGLQWKIGDSFRLYGDYYYSP--------DS--LSSGIDSYQEANVGASWTIMRPLSIQAGYRYLNLAGKDGNRDNTiaDGPYIGA 176
                 888888889*******999994........45..788889999999*******************9996533333333335555555 PP

>> OmpA_membrane  OmpA-like transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.068   1.7e+02     119     150 ..      88     119 ..      72     123 .. 0.84
   2 ?   10.4   0.0   0.00015       0.4     131     162 ..     135     166 ..     129     178 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.068
                    .EEEEEEEEEEEEEEEEEEEETTEEEEEEEEE CS
  OmpA_membrane 119 kknhdtkvslllavGveyaitpelalrleYqy 150
                     k+ d++++  ++ G++++i + + l  +Y y
     CTQ29140.1  88 PKQGDEGYAAAVGGGLQWKIGDSFRLYGDYYY 119
                    57789999999**********99999999887 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00015
                    EEEEEEEEETTEEEEEEEEEESSSSSBTSTTS CS
  OmpA_membrane 131 avGveyaitpelalrleYqylnnvgdlrkaak 162
                     vG+ + i++ l +++ Y+yln +g+++++++
     CTQ29140.1 135 NVGASWTIMRPLSIQAGYRYLNLAGKDGNRDN 166
                    58***********************9988765 PP

>> BBP2  Putative beta-barrel porin-2, OmpL-like. bbp2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.3e-05     0.033     166     240 ..      90     162 ..      21     178 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
        BBP2 166 eddsngtpalggqvtyspddklslnlntlygndnpdgrfktqnrfiydlvltykltdkltlilnadygeeegqkn 240
                 + d+  + a+gg++++++ d++ l+  ++y++d+  +    +  +  ++ +++++   l++ +++ y +  g+  
  CTQ29140.1  90 QGDEGYAAAVGGGLQWKIGDSFRLYGDYYYSPDSLSS--GIDSYQEANVGASWTIMRPLSIQAGYRYLNLAGKDG 162
                 345556899*************************866..78888889999***************9999887653 PP

>> Alpha-amyl_C2  Alpha-amylase C-terminal beta-sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   5.9e-05      0.15      17      56 ..      92     142 ..      88     143 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.9e-05
  Alpha-amyl_C2  17 adlYaAeideklivKiGpr.......dwsPs....ggtkwklaasGddyaV 56 
                    ++ YaA +++ l  KiG +        +sP     g ++++ a  G+ +++
     CTQ29140.1  92 DEGYAAAVGGGLQWKIGDSfrlygdyYYSPDslssGIDSYQEANVGASWTI 142
                    678*********************99777777777999*********9987 PP

>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   2.6     0.025        64      39      75 ..     110     142 ..      21     156 .. 0.60
   2 ?    2.8   0.2     0.035        90      27      72 ..     132     179 ..     123     180 .] 0.69

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.025
         OEP  39 tlslsgsygyegngsegggddggtgttsvgltlsqpl 75 
                 +++l g y y+ ++ ++g d+ +     +++++s+++
  CTQ29140.1 110 SFRLYGDYYYSPDSLSSGIDSYQE----ANVGASWTI 142
                 344445555544444444333332....666666665 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.035
         OEP  27 anlkaakae.flPtlslsgsygyegngsegggddggtgtt.svgltls 72 
                 +++++ +++  +  ls++++y+y +  +++g+ d++  ++ ++g+++s
  CTQ29140.1 132 QEANVGASWtIMRPLSIQAGYRYLNLAGKDGNRDNTIADGpYIGASAS 179
                 344444444338889999999999999999988887666677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1332.64
//
Query:       CTQ29141.1  [L=317]
Description: putative transposase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-89  296.6   0.0    1.1e-88  296.2   0.0    1.2  1  Transposase_31  Putative transposase, YhgA-like
  ------ inclusion threshold ------
       0.05   13.3  10.1       0.11   12.2  10.1    1.6  1  Yae1_N          Essential protein Yae1, N terminal
      0.063   11.7   0.0      0.085   11.3   0.0    1.1  1  Zwilch          RZZ complex, subunit zwilch


Domain annotation for each model (and alignments):
>> Transposase_31  Putative transposase, YhgA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.2   0.0   1.9e-92   1.1e-88       1     203 [.       7     208 ..       7     209 .. 0.99

  Alignments for each domain:
  == domain 1  score: 296.2 bits;  conditional E-value: 1.9e-92
  Transposase_31   1 tpHDalfkellsdpetardfleihlpeelkelldletlklesgsfieeelreslsDlLfsvktkegkegyiyvliEhksspdklmafrLlrYava 95 
                     +pHDa+fk+lls+ +tardfl+ihlp+ l++l++l+tl+lesgsfi++elr+s+sD+L+s++t++g egyiy+liEh+ss+d++mafrL+rYa+a
      CTQ29141.1   7 SPHDAVFKHLLSHRATARDFLDIHLPAPLRALCNLNTLRLESGSFIDDELRASHSDILYSLQTQAG-EGYIYLLIEHQSSADRHMAFRLMRYAIA 100
                     59***************************************************************9.**************************** PP

  Transposase_31  96 imerhlkakekeklplviplvfYhGeee.wplslslldlfddpelakelykseflLvDltkvpddeilekrrlallllvqkhirqrdlaellkkl 189
                     +m+rhl++++++ lplvipl+fYhG+ + wp+++++l+ f+dp++a+++y  +f+L+D+t++pddei+++rr+a+l+l+qkhirqrdl++l+++l
      CTQ29141.1 101 AMQRHLDKGHTQ-LPLVIPLLFYHGRVSpWPYPMCWLAGFADPDIARRIYGEDFPLIDITSTPDDEIMRHRRVAMLELLQKHIRQRDLMDLHEQL 194
                     ************.********************************************************************************** PP

  Transposase_31 190 velleelekteeql 203
                     v+ll+ ++++++ql
      CTQ29141.1 195 VRLLALGYTSRRQL 208
                     *********99987 PP

>> Yae1_N  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2  10.1   1.9e-05      0.11       1      25 [.     255     279 ..     253     285 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.9e-05
      Yae1_N   1 GYreGiaeGkeqglqeGfdeGyqeG 25 
                 G+++G+++G eqglq+G ++G ++G
  CTQ29141.1 255 GHQQGLKQGLEQGLQQGIEQGIEQG 279
                 5555555555555555555555555 PP

>> Zwilch  RZZ complex, subunit zwilch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.4e-05     0.085     300     361 ..     160     222 ..     154     233 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.4e-05
      Zwilch 300 skkdeeevksdaaavienvvslveerkdtdvteklWeilrkc.ssykdlkklfklvlqalarg 361
                 s  d+e + +  +a  e +++ +++r++ d+ e+l  +l +  +s  +lk l++++lqa + +
  CTQ29141.1 160 STPDDEIMRHRRVAMLELLQKHIRQRDLMDLHEQLVRLLALGyTSRRQLKTLLHYLLQAGNAA 222
                 66778888999999999999**************************************97766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2348.03
//
Query:       CTQ29142.1  [L=141]
Description: putative NUDIX hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-19   70.8   0.0    1.2e-19   70.7   0.0    1.0  1  NUDIX     NUDIX domain
    0.00016   21.6   0.0    0.00039   20.4   0.0    1.6  1  NUDIX_4   NUDIX domain
  ------ inclusion threshold ------
      0.049   13.1   0.1       0.11   12.0   0.1    1.5  1  DUF4916   Domain of unknown function (DUF4916)


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0     2e-23   1.2e-19       1     122 [.       1     129 [.       1     137 [. 0.78

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 2e-23
                 EEEEEEEEEEEETTSEEEEEEES..SSSTTT.EESSEEECBTTSHHHHHHHHHHHHHHS..EEEEEEEEEEEEEEEEEEEEEEEE..EEEEEEEEE..E CS
       NUDIX   1 klrravgvvllnekgevLlvrrs..kkpfpg.WelPgGkvepgEtpeeAArREleEEtG..leaellellgrlhylapydgpygd..eheilyvfl..e 90 
                 +++r++ + l++++g+ Ll + +  +  fpg W+l gG+vepgE +eeA+rRE++EE+G  l   l+++   +   ++  + y+d  ++ i++++l  +
  CTQ29142.1   1 MRHRTIVCPLIENEGHYLLCKMAadRGVFPGqWALSGGGVEPGERIEEALRREIREELGekL--ILTHIAPWCFRDDTRVKTYPDghQETIYMIYLifD 97 
                 68999****9999999*****9999999999****************************443..44455556666666666666677555554555567 PP

                 EECSGCSSTSTTTEEEEEEEEHHHHHHHHTHC CS
       NUDIX  91 evegelepndenevsevrwvpleellkeklaa 122
                  v  +  ++  +e++++ wv+ e+l+  +l+a
  CTQ29142.1  98 CVSANRDVTINEEFDDYAWVKAEDLKNYDLNA 129
                 77777777788**************5555444 PP

>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   6.4e-08   0.00039       4     107 ..      10     134 ..       7     137 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 6.4e-08
                 EEEECTEEEEEE--T.TSSSTT-EE-SEEE.-TTS-HHHHHH...HHHHS-EEE...EEEE......EEEE.EEETTEEEEEEEEEE........EEE. CS
     NUDIX_4   4 lirddgrvllekRpe.kgllggLwefPgge.eegeeleeala...reelgieve...elep......gtvk.HvftHfrltltvylv........rvee 79 
                 li ++g++ll k  + +g+  g w + gg  e+ge+ eeal    reelg +     +++p       +vk +   H++  + +yl+        +v  
  CTQ29142.1  10 LIENEGHYLLCKMAAdRGVFPGQWALSGGGvEPGERIEEALRreiREELGEK-LiltHIAPwcfrddTRVKtYPDGHQETIYMIYLIfdcvsanrDV-- 105
                 677889999999876379*********9888999997778855668888832.23443333443333444334445555555577668756444322.. PP

                 S..---......EEEEEEGGGGGGS---CCCHCC CS
     NUDIX_4  80 geeapa......elrwvtpeeleeyalptavrkl 107
                      +      ++ wv++e+l++y l +a r  
  CTQ29142.1 106 -----TineefdDYAWVKAEDLKNYDLNAATRVT 134
                 .....1344567***************9999865 PP

>> DUF4916  Domain of unknown function (DUF4916)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   1.8e-05      0.11      55     148 ..      35     126 ..      17     135 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
                 -EEEE--TT--HHHHHHHHHHHHH-TT--B---SS---SEEEEEESSTTSSSEE-TT-EEEEEEEE....EEB-S-----TTEEEEEEE-HHHHTSHH CS
     DUF4916  55 lvsGrvlyhetvreallrhiekdlGelalpqlPaslqPftvaeyfPtpgvseytdprqhavslayv....vpvaGdceprqdaleleWltpeealsee 148
                 l  G v   e++ eal r+i ++lGe     + + + P     +     v+ y d  q ++ + y+    v+ + d++ +++  + +W+++e+  + +
  CTQ29142.1  35 LSGGGVEPGERIEEALRREIREELGEKL---ILTHIAPWC---FRDDTRVKTYPDGHQETIYMIYLifdcVSANRDVTINEEFDDYAWVKAEDLKNYD 126
                 567889999****************854...334556665...4456778889999999999999723224567788888888999999988876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1155.27
//
Query:       CTQ29143.1  [L=458]
Description: o-succinylbenzoate-CoA ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-53  179.4   0.2    5.6e-51  173.5   0.2    2.1  1  AMP-binding    AMP-binding enzyme
    1.8e-07   32.0   0.1    4.8e-07   30.7   0.1    1.8  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.5   0.2   6.2e-55   5.6e-51       3     420 ..      10     355 ..       8     358 .. 0.84

  Alignments for each domain:
  == domain 1  score: 173.5 bits;  conditional E-value: 6.2e-55
                  HHHHHSTTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEE CS
  AMP-binding   3 eqaaktpdkvalvdsgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvlia 100
                  ++ +++ ++ al     +q lT+rel +rv++lA+g+ + Gv +g+ Va+ + n pe ++a+la+l+ Ga v plnp+l+a  l+ +l +  ++  + 
   CTQ29143.1  10 HWRQRRGEALALRL--NNQPLTWRELCARVDALASGFAAQGVMEGQGVALRAYNQPETLLAWLALLQCGARVLPLNPQLPAVLLQALLPALTMQHQL- 104
                  45567779999977..89********************99*****************************************9999999999998888. PP

                  TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSC CS
  AMP-binding 101 tvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfk 198
                   v + +        ++l+    ++ l+             e        +  ++ ++ d l+ +  TSG+TG PK++++s ++ +a++a +       
   CTQ29143.1 105 -VLNGD-----VLPGNLP----MLTLQ-----------LVE---G----E-HAACWHGDRLVSMTLTSGSTGLPKAAVHSANAHLASAAGVL-A-LMP 171
                  .32211.....1112111....11111...........111...1....1.2236789***********************99999999973.2.244 PP

                  CTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EB CS
  AMP-binding 199 lkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggepls 296
                  + ++d +l  lpl+h+ g+   ++ +ll+Ga++ + +k +       ++++  +++t+  +vP+ l +ll+++            sl+ vllgg++++
   CTQ29143.1 172 FAAGDDWLLSLPLFHVSGQ-GIVWRWLLAGARLTVRDKQPL------AQML--HGCTHASLVPTQLWRLLNDD---------AAVSLKAVLLGGASIP 251
                  5679**************9.***************887765......3344..6*****************63.........4458************ PP

                  HHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEETCC CS
  AMP-binding 297 pellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafdsegr 394
                   el++++r+ +++  + gYGlTE +  v+ +++ +    +  vG +lpg evkiv             Ge+++r  +++ gY+++ ++ + + + e +
   CTQ29143.1 252 VELTERARKQGIR-SFCGYGLTEFASTVC-AKEADG---AADVGEALPGREVKIVA------------GEIWLRASSMAAGYWRDGQLLSLTNN-E-G 330
                  **********998.799**********99.774444...5569***********65............9***************9888877765.5.7 PP

                  EEEEEEEEEEETTSEEEEEEECCCEE CS
  AMP-binding 395 wlrTGDlgrldedGyleivgRkkdli 420
                  w+ T D g l+ +G+l +vgR+++l+
   CTQ29143.1 331 WFATRDRGALH-NGRLTVVGRLDNLF 355
                  ***********.9**********987 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1   5.4e-11   4.8e-07       1      67 [.     366     430 ..     366     439 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 5.4e-11
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---.---HHHHHHHHHHHHT-TTTS-SEEEE-S CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg.sealeeeLkahvrkelgpyavpkkvvfvd 67 
                    evE ++++hp+V+++++v  +d+  G+++va+V  +dg +     +L a+ +++l+ +  p +   ++
     CTQ29143.1 366 EVERVILAHPQVQQVFIVPLDDAEYGQRPVAVVECDDGcE---LSALAAWSAERLARFQQPVRWLRLP 430
                    8**********************************88853...399*********9998887666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3329.05
//
Query:       CTQ29144.1  [L=321]
Description: o-succinylbenzoyl-CoA synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-18   65.4   0.3      8e-18   64.8   0.3    1.2  1  MR_MLE_C         Enolase C-terminal domain-like
  ------ inclusion threshold ------
      0.093   12.8   0.0       0.18   11.9   0.0    1.4  1  Phage-A118_gp45  Protein gp45 of Bacteriophage A118
      0.095   12.1   0.1        0.2   11.1   0.1    1.5  1  Enolase_like_N   Enolase N-terminal domain-like


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.3   1.3e-21     8e-18      10     173 ..     123     282 ..     117     305 .. 0.83

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 1.3e-21
                 HHHHT-SEEEEETSSSHHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGG.GT..ESEEESSSSTTTHHHHHHHHHHHH.SSEEEES CS
    MR_MLE_C  10 vaeqgfravKlkvggddvaedvervravreavgpgddvdlmvDanqawdlatAirvarelee.ld..llwlEEPvppeddleglaelrara.sipiaag 104
                 +a+ g +  K+kvg  +  +d  +v+++ ea+ p  d++l++Dan aw++ +A+++a+ +++ ++  +++lEEP++    +e+ ++ + r+ +i ia++
  CTQ29144.1 123 AAMPGEKVAKVKVGLWEAVRDGMVVNLLLEAI-P--DLQLRLDANRAWTPLKAQQFAKYVNPaYRqrIAFLEEPCKT---REDSRAFS-REtGIAIAWD 214
                 445588888999888899**************.6..57**********************7777667********87...56678888.44499***** PP

                 TTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSC.SSHHHHHHHHHHHHTT CS
    MR_MLE_C 105 EslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsg.sgglglaaslhlaaai 173
                 Esl+  adfr ++e  +v +v ++++ +g ++++++ +a a+a g+ v++ s  +++lgl + + +aa +
  CTQ29144.1 215 ESLRE-ADFRFVAE-PGVRAVVIKPTLTGSLQKVQQQVAAAHALGLSVVISSSiESSLGLTQLARIAAWL 282
                 ***87.68887755.66**********************************9525778777777766655 PP

>> Phage-A118_gp45  Protein gp45 of Bacteriophage A118
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     3e-05      0.18      27      44 ..     179     196 ..     174     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
  Phage-A118_gp45  27 anPafrqkialietGcek 44 
                       nPa+rq+ia++e  c+ 
       CTQ29144.1 179 VNPAYRQRIAFLEEPCKT 196
                      6*************9976 PP

>> Enolase_like_N  Enolase N-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   3.4e-05       0.2       8      37 ..      19      52 ..       9      64 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.4e-05
  Enolase_like_N  8 vrFRgitvReavlle...Gp.aGwgEfspFleYd 37
                     r R +++R+++ ++   G+ +GwgE sp + ++
      CTQ29144.1 19 LRERRLKTRDGLFIRlqeGErEGWGEISPLPGFS 52
                    577999****9988533376469******88775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2509.99
//
Query:       CTQ29145.1  [L=285]
Description: dihydroxynaphthoic acid synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-79  265.2   0.0    5.9e-79  264.9   0.0    1.0  1  ECH_1          Enoyl-CoA hydratase/isomerase
    2.4e-23   83.2   0.2    2.9e-23   82.9   0.2    1.2  1  ECH_2          Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
      0.022   14.7   0.2       0.62   10.0   0.0    2.3  2  Peptidase_S49  Peptidase family S49
       0.11   11.5   0.0       0.16   10.9   0.0    1.2  1  SDH_sah        Serine dehydrogenase proteinase
       0.18   11.5   0.2       0.26   10.9   0.2    1.1  1  DUF1666        Protein of unknown function (DUF1666)


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.9   0.0   1.6e-82   5.9e-79       3     249 ..      31     279 ..      29     282 .. 0.96

  Alignments for each domain:
  == domain 1  score: 264.9 bits;  conditional E-value: 1.6e-82
                 ETTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEE.BTSEEEEEB-HHHHHHHHC..HHHHHHHCCHHHHHHHHHHSSSEEEEEE-SE CS
       ECH_1   3 eagvaviklnrPeavNalsaelltEliqalekleddksvravvLtG.gdkaFaaGadlkemaeeek..akqallkeevlelwtklytvpkpviaavnGa 98 
                  +g+a+i++nrP++ Na+ + +++E+iqal++++ d +++++vLtG g+kaF+aG+d+k +   +    +  + + +vl+ +++++t+pkpv+a+v G+
  CTQ29145.1  31 TDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIVLTGeGEKAFCAGGDQKVRGDYGGyqDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGY 129
                 579********************************************************99775543477778899*********************** PP

                 EETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHHSCHHH CS
       ECH_1  99 aigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaeklaekspaa 197
                 +igGG++l+++cD++iaa+na fg++  k+G+++g +g  ++ar+vG++kA+ei+ l++++ aq al++Glv++vvp ++l++e++ ++++++++sp a
  CTQ29145.1 130 SIGGGHVLHMMCDLTIAAENAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAQQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMA 228
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHCTSHHHHHHHHHHHTCSH---- CS
       ECH_1 198 lrqlkealnakle.dalaeqleaeaklfestfskddikeGlqaflEkrkpefe 249
                 lr lk+alna+ + +a  + l+ +a+++ +++++   +eG++af  kr+p+f 
  CTQ29145.1 229 LRCLKAALNADCDgQAGLQELAGNATMLFYMTEE--GQEGRNAFNQKRQPDFS 279
                 ****************************999988..56*************97 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.2   8.2e-27   2.9e-23       2     181 ..      35     214 ..      34     261 .. 0.85

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 8.2e-27
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEET CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivmG 100
                 + it+nrp+  Na     v+++ +al + + dd++ ++vl+g+gekafCAGgD +   +    ++++      +  +++ +i t+pkpvva++ G+ +G
  CTQ29145.1  35 AKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIVLTGEGEKAFCAGGDQKVRGDYGGYQDDS-GVHHLNVLDFQRQIRTCPKPVVAMVAGYSIG 132
                 579**************************************************76665555554444.345667788999******************* PP

                 HHHHHHTTSSEEEE-TT-EEE--GGGGT---.-TTHHHHHHCSSTTHHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHH CS
       ECH_2 101 gGvGlsvhgsfrvvtertvfAmPEtaIGlfP.DvGgsyfLsrlpgelGlylalTGarlkgadalaaglathyvpsekleale 181
                 gG  l + + + ++ e+++f     ++G f    G+sy+   + ++ ++ +    ++ ++++al +gl + +vp ++le+ +
  CTQ29145.1 133 GGHVLHMMCDLTIAAENAIFGQTGPKVGSFDgGWGASYMARIVGQKKAREIWFLCRQYDAQQALDMGLVNTVVPLADLEKET 214
                 ****************************99515688888777788999999999********************99997644 PP

>> Peptidase_S49  Peptidase family S49
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00017      0.62       6      43 ..     119     156 ..     114     160 .. 0.93
   2 ?    2.2   0.0     0.044   1.6e+02     121     142 ..     188     209 ..     178     216 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00017
                    T--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE--- CS
  Peptidase_S49   6 kkPvvasaenvaaSggYylasaadkivanpstivgsiG 43 
                     kPvva++ +++  gg  l +++d  +a+ ++i g  G
     CTQ29145.1 119 PKPVVAMVAGYSIGGGHVLHMMCDLTIAAENAIFGQTG 156
                    59*******************************99877 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.044
                    HEEEHHHHHHTTSSSEETSHHH CS
  Peptidase_S49 121 rvltgqqAlklgLvdelgtvdd 142
                    r + +qqAl+ gLv  +  + d
     CTQ29145.1 188 RQYDAQQALDMGLVNTVVPLAD 209
                    6799**********99876665 PP

>> SDH_sah  Serine dehydrogenase proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.5e-05      0.16     117     177 ..     117     181 ..     102     185 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.5e-05
     SDH_sah 117 ehkaktrvivphyamsGGtlialaadeiildenavlGpvdpqlgqyp....aasilkvvekkeak 177
                   + ++  +v  y++ GG ++ +  d  i  ena++G   p++g +     a+ + ++v +k+a 
  CTQ29145.1 117 TCPKPVVAMVAGYSIGGGHVLHMMCDLTIAAENAIFGQTGPKVGSFDggwgASYMARIVGQKKAR 181
                 5567788899*********************************9874222255566666666665 PP

>> DUF1666  Protein of unknown function (DUF1666)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   7.2e-05      0.26     199     228 ..     195     224 ..     179     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.2e-05
     DUF1666 199 lidlklvsRvLrmskltkeqLkWCeeklsk 228
                  +d+ lv+ v+ + +l+ke ++WC+e l++
  CTQ29145.1 195 ALDMGLVNTVVPLADLEKETVRWCREMLQN 224
                 579***********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2220.37
//
Query:       CTQ29146.1  [L=252]
Description: putative thioesterase, menaquinone synthesis [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-15   58.2   7.7    2.1e-15   57.9   7.7    1.0  1  Abhydrolase_6  Alpha/beta hydrolase family
    8.4e-15   55.1   1.0    1.1e-14   54.8   1.0    1.2  1  Abhydrolase_1  alpha/beta hydrolase fold
    5.8e-08   32.3   0.1    8.4e-08   31.8   0.1    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
    0.00031   20.9   0.3    0.00069   19.8   0.2    1.6  2  Thioesterase   Thioesterase domain
  ------ inclusion threshold ------
      0.012   15.0   0.0      0.097   12.0   0.1    2.0  2  DUF915         Alpha/beta hydrolase of unknown function (DUF9
      0.013   15.2   0.0      0.022   14.5   0.0    1.3  1  Abhydrolase_5  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   7.7     7e-19   2.1e-15       1     218 [.      17     243 ..      17     244 .. 0.61

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 7e-19
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTST.S-GGCS--HHHCHHH.HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC....EEEE CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhG.rsdpppldledladl.aalldelaagggpvvlvGHSlGGalalaaapla..lvvgvl 92 
                    +++lHG+++++  W+   +  +++a    l +DlpGhG ++d +  d++ + +l   +l++   + ++ +l+G+SlGG +a+ +a+++    +g++
     CTQ29146.1  17 LVFLHGFSGDRNEWR--KVGDAFPAW-PRLYLDLPGHGgSADIAVQDFAGVNTLlQSMLNSY--NIHKYWLIGYSLGGRVAMNFASQPraGMRGLI 107
                    79************8..773333443.2245******6144555555544444444455555..69999**************6666654445599 PP

                    ES-..........----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHHCCCCHCHCCCGHH...HHCCHHCHTTCCHHTT-TTGC.... CS
  Abhydrolase_6  93 ldppp........talpagllaaalelllallallrllawlsreplprlfladedadaawrarlarla...allaglgllpaaawadlpvpl.... 173
                    +++           +++ ++ +a++e +++ +   +++ w +     + f + ++a+++  ++l+       l+a+l + ++aa adl+++l    
     CTQ29146.1 108 VEGGHpglqdveaRQARRSNDSAWAERFRREPLEQVFADWYQ----QPVFASLNAAQRESLVALRSRNngaTLAAMLQATSLAAQADLRASLqard 199
                    999221122222222222224444444444444444455553....22444433333333333333334445555666667778888888888888 PP

                    ....EEECTT-CHHHHCHHCCCHSTTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 174 ....lvlggeDplvprllerllaqagarlpvvlpgaGHlphleepdeva 218
                        ++ g++D+  ++ ++ l+    a+l +++ +aGH  h ++p++v+
     CTQ29146.1 200 fpfhYLCGERDAKFRAIAQTLA----ADL-HLIHHAGHNAHRDNPAAVI 243
                    8886664599**8888877666....699.99**********9999986 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   1.0   3.5e-18   1.1e-14       1     189 [.      15     188 ..      15     239 .. 0.82

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 3.5e-18
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGG CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeype 96 
                    p+lv+lhG+ g  + w++  +++a++   +  + lDl+G+g S        +d+    v+  l+  l++++++k +l+G+S+GG++a+++a++   
     CTQ29146.1  15 PWLVFLHGFSGDRNEWRK--VGDAFP--AWPRLYLDLPGHGGSADIAV---QDFAG--VNTLLQSMLNSYNIHKYWLIGYSLGGRVAMNFASQPRA 101
                    79****************..*****9..6**************99999...56665..9************************************* PP

                    GEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHH CS
  Abhydrolase_1  97 rVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksi 189
                     +++l+  g+ +p     ea +  + ++  ++++++ +  +++++++++ ++ a++   + +      +++ r +++g + a +l++++l + 
     CTQ29146.1 102 GMRGLIVEGG-HPGLQDVEARQARRSNDSAWAERFRREPLEQVFADWYQQPVFASLNAAQRE-----SLVALRSRNNGATLAAMLQATSLAAQ 188
                    **********.9999999999999999999*****999999999999999999998887765.....66677777777777777776665443 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   2.8e-11   8.4e-08       8     203 ..      18     211 ..      14     239 .. 0.70

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2.8e-11
  Hydrolase_4   8 vlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvagli 105
                  v++HG+    +   ++++a+ a     + lD  GhG s  +   v++f      ++++++ + + ++  +  l+G S+GG +a++++ + ++ ++gli
   CTQ29146.1  18 VFLHGFSGDRNEWRKVGDAFPAW--PRLYLDLPGHGGS--ADIAVQDFAG----VNTLLQSMLNSYNIHKYWLIGYSLGGRVAMNFASQPRAGMRGLI 107
                  55566666666666666655543..3456899999999..5555666654....566777777888899***************************** PP

  Hydrolase_4 106 lsaPalkikaklkappllkl.....llkllgkllpklqvsnnlkadslsrdpevvaayeadplvhgkitvrllle..lldamkrleeraakitlPlll 196
                  + +   +++ +++a+++ +      + ++  + l ++   +  ++ + s + ++++++ a     ++ t+  +l+   l a+++l+++ ++ ++P+  
   CTQ29146.1 108 VEGGHPGLQ-DVEARQARRSndsawAERFRREPLEQVFADWYQQPVFASLNAAQRESLVALRSRNNGATLAAMLQatSLAAQADLRASLQARDFPFHY 204
                  ***877776.343444444422222444444444444447777999**********9999999966666665555115667777888888899***** PP

  Hydrolase_4 197 lhGeaDk 203
                  l+Ge+D 
   CTQ29146.1 205 LCGERDA 211
                  ******6 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.2   2.3e-07   0.00069      31     140 ..      43     146 ..      16     230 .. 0.63
   2 ?   -1.3   0.0      0.66     2e+03       6      52 ..     202     247 ..     200     251 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.3e-07
                   EEECSTTST.SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEEEEESCCCCCCHHCHHCCCHTTHHTHHHHH CS
  Thioesterase  31 lavqlpgre.rdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavkslflidssapseteaqeasrraedeefveel 126
                   l + lpg++ + + ++++++ +   +  +l++ +    y l+G+SlGg +A+ +A+q ++    +++l++ ++++    ++  + rr  d +  e +
    CTQ29146.1  43 LYLDLPGHGgSADIAVQDFAGVNTLLQSMLNSYNI-HKYWLIGYSLGGRVAMNFASQPRA---GMRGLIVEGGHPGLQDVEARQARRSNDSAWAERF 135
                   55556666555555555555554444444444444.4899***************98765...6788888888888777777777777777777777 PP

                   CCTTHHHCCTTTHC CS
  Thioesterase 127 tdlggtepeelled 140
                   +++     e++ +d
    CTQ29146.1 136 RREPL---EQVFAD 146
                   76663...344333 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.66
                   E--TTC.CSGGGHHHHHHCTTCEEEEEEECSTTST.SHHHCTTCHHHHH CS
  Thioesterase   6 fppagG.sasvfrslasklsdpvvevlavqlpgre.rdepplesieela 52 
                   f++  G   + fr +a+ l ++   ++ +  +g++   ++p+  i+ la
    CTQ29146.1 202 FHYLCGeRDAKFRAIAQTLAAD---LHLIHHAGHNaHRDNPAAVIACLA 247
                   6666665556788899999888...888888888776666666666665 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       0.1   3.1e+02      14      28 ..      17      31 ..       7      38 .. 0.78
   2 ?   12.0   0.1   3.3e-05     0.097      89     121 ..      64      96 ..      54     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.1
      DUF915 14 tifihGyggtaesln 28
                 +f+hG++g+ +   
  CTQ29146.1 17 LVFLHGFSGDRNEWR 31
                48********98765 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.3e-05
      DUF915  89 lkkvlseLkkkYnikkfnavGhSmGglaltsYl 121
                 ++  l+ + + Yni+k  ++G+S Gg  ++ ++
  CTQ29146.1  64 VNTLLQSMLNSYNIHKYWLIGYSLGGRVAMNFA 96 
                 6778999*******************9998886 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   7.3e-06     0.022      47      94 ..      69     116 ..      56     128 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.3e-06
  Abhydrolase_5  47 eeiikeapklekfvvgGhslGGvvasrfaaeee.kiegvvflasYPekd 94 
                    ++++++++ ++k+ + G+slGG va +fa++    + g++  + +P  +
     CTQ29146.1  69 QSMLNSYN-IHKYWLIGYSLGGRVAMNFASQPRaGMRGLIVEGGHPGLQ 116
                    34555555.99*******************9865899999988888743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1890.16
//
Query:       CTQ29147.1  [L=556]
Description: bifunctional 2-oxoglutarate decarboxylase and SHCHC synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-83  278.4  13.2    5.6e-83  277.8  13.2    1.3  1  TPP_enzyme_M_2  Middle domain of thiamine pyrophosphate
    3.8e-30  104.8   2.1    1.3e-26   93.2   0.1    2.3  2  TPP_enzyme_N    Thiamine pyrophosphate enzyme, N-terminal TPP
      2e-11   43.9   0.0    6.3e-11   42.3   0.0    1.8  2  TPP_enzyme_C    Thiamine pyrophosphate enzyme, C-terminal TPP
  ------ inclusion threshold ------
       0.21   11.4   3.9       0.33   10.8   0.1    2.6  2  DUF2016         Domain of unknown function (DUF2016)


Domain annotation for each model (and alignments):
>> TPP_enzyme_M_2  Middle domain of thiamine pyrophosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.8  13.2   1.2e-86   5.6e-83       2     208 .]     184     388 ..     183     388 .. 0.99

  Alignments for each domain:
  == domain 1  score: 277.8 bits;  conditional E-value: 1.2e-86
                     HHHHGGGGGGG-SS-SEE-.--EEE----TTHHHHTTSSEEEEE-B--HHHHHHHHHHHHHHT--EEE-TTT-S--SSTTHHHHTTSHHHHHHHT CS
  TPP_enzyme_M_2   2 ewlaalgeWlqsekpwlqqqaeqkevltkedwdrwrqkrGvvvaGrlsaeegkqvaawaeklGWplltDvqsqlgqalpyaDlwLanpkvkeeLa 96 
                     ew+++lg+W+qs+kpwl+q a q e ++++dw++wrqkrGvvvaGr+sa egk+va+wa++lGWpl++Dv+sq+gq+lp+aDlwL n k+ +eLa
      CTQ29147.1 184 EWQQQLGNWWQSDKPWLRQ-ALQLESEKQRDWFFWRQKRGVVVAGRMSAAEGKKVAEWAQTLGWPLIGDVLSQTGQPLPCADLWLGNGKAVSELA 277
                     7******************.999************************************************************************ PP

                     T-SEEEEESB---SHHHHHHHHH---SEEEEEESS-SB--TT--SEEEEES-HHHHHHHS---------SHHHHHHHHHHHHHHTT.TTSSSHHH CS
  TPP_enzyme_M_2  97 qadiviqfGsrlvsKrllqflaelkpeeyWlvdesqgrldpahhrkrrfvakveewlrahpaesqkpWalellalseklaelveqqldeefgEaq 191
                     qa+iv+q+Gs+l++Kr+lq++a+++p+eyWlvd+ +grldpa+hr+rr+ ++ve+wl++hpae+++pWa+ + +l+ ++ ++  ++ +e fgEaq
      CTQ29147.1 278 QAQIVVQLGSSLTGKRVLQWQATCEPDEYWLVDNLPGRLDPAQHRGRRLLSSVERWLELHPAEKRQPWATVIPQLAGQAWQAAVAS-NEPFGEAQ 371
                     ********************************************************************************999976.789***** PP

                     HHHTGGGGS-TT-EEEE CS
  TPP_enzyme_M_2 192 lahqlaellpeqgqLFl 208
                     la++++++lpeqgqLF+
      CTQ29147.1 372 LAQRIRRYLPEQGQLFV 388
                     ****************8 PP

>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.1   2.9e-30   1.3e-26       2     134 ..       9     140 ..       8     173 .. 0.90
   2 !   11.0   0.2   5.2e-05      0.23      50     161 ..     420     537 ..     388     544 .. 0.68

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 2.9e-30
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   ++a+++++aL+++gv+h+++ pGsr++pl+ a++e++ + ++++ +E+g ++ A g+a+a+++p++v+vtsg++++n+++al+eA +++ +l++l++
    CTQ29147.1   9 RWAAVILEALTRHGVQHICIAPGSRSTPLTLAAAENRAFIHHTHFDERGLGHLALGLAKASRQPVAVIVTSGTATANLYPALIEAGLTGEKLILLTA 105
                   6899********************************************************************************************* PP

                   E--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGG CS
  TPP_enzyme_N  99 drptslrgqgvlqqeldqlalfrpvtkyaervtspe 134
                   drp +l+++g+ q ++ q ++f+++   +  + +p+
    CTQ29147.1 106 DRPPELIDCGANQ-AIRQPGMFASHPAQTISLPRPS 140
                   *************.********99886666555555 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 5.2e-05
                   HHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEEE--CCCHH..S..TC--T-CCHH..........HCCCSSEEEE-SSGG CS
  TPP_enzyme_N  50 gaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsgdrptslrg..qgvlqqeldqlal..........frpvtkyaervtspe 134
                   g ++ A g+ ra+ +p  ++v     a+  l++la  ++++ Pl++++ +++  ++    +++q+e  q  l          ++ +  + +r+++  
    CTQ29147.1 420 GLIATAAGVQRASARPTLAIV-GDLSALYDLNSLALLRQASAPLVLIVVNNNGGQIFsmLPTPQDERRQFYLmpqdvdfshaAAMFGLAYHRPDDWP 515
                   4577899**************.55689999******************9998877777744444444444443333331100444444444555555 PP

                   GHHHHHHHHHHHHHSSS--EEEEEEEH CS
  TPP_enzyme_N 135 elpealrrAirtalsgrpgPvylelpk 161
                   +l eal+ A+r a     g++++el+ 
    CTQ29147.1 516 SLDEALAGAWRRA-----GATVIELAV 537
                   5555555555544.....777777765 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.83   3.7e+03      37      68 ..      62      93 ..      57     103 .. 0.70
   2 !   42.3   0.0   1.4e-14   6.3e-11      26     152 ..     414     534 ..     397     535 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.83
                  HHHHHHHSTTSEEEEEEEHHHHHHT.GGGHHHH CS
  TPP_enzyme_C 37 AiGaklakpdrevvaivGDGgflmi.lqelata 68
                  A+G++ a  +++v +iv  G+   +  ++l+ a
    CTQ29147.1 62 ALGLAKA-SRQPVAVIVTSGTATANlYPALIEA 93
                  7777776.3568888888888777766777766 PP

  == domain 2  score: 42.3 bits;  conditional E-value: 1.4e-14
                   TTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB.BS----HHHHHHHTTS CS
  TPP_enzyme_C  26 glgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfggkrksgpagkdlkpvdfaklaealGa 122
                   g + +   ++ A G+++a   r+  aivGD + l+ l+ la   +  +p++++v+nN+g +   + ++p+ ++r++       ++vdf   a+ +G 
    CTQ29147.1 414 GASGIDGLIATAAGVQRA-SARPTLAIVGDLSALYDLNSLALLRQASAPLVLIVVNNNGGQIFSMLPTPQDERRQFYLM---PQDVDFSHAAAMFGL 506
                   55555666899******8.467****************************************************99987...89************* PP

                   EEEEESSH.HHHHHHHHHHHHCSSSEEEEE CS
  TPP_enzyme_C 123 kgarvekadveeleealkealekkgpalie 152
                      r  ++d+  l+eal+ a ++ g ++ie
    CTQ29147.1 507 AYHR--PDDWPSLDEALAGAWRRAGATVIE 534
                   *778..9999******************98 PP

>> DUF2016  Domain of unknown function (DUF2016)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.7      0.13   5.6e+02      36      56 ..     190     210 ..     186     214 .. 0.80
   2 ?   10.8   0.1   7.3e-05      0.33      18      66 ..     314     371 ..     312     377 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
     DUF2016  36 GlflevrrpWLkviqklaaqk 56 
                 G + + ++pWL+   +l ++k
  CTQ29147.1 190 GNWWQSDKPWLRQALQLESEK 210
                 8899*******9888877544 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 7.3e-05
     DUF2016  18 gelepleknGeRllvaanGlf....levrrpWLkviqkla.aqkkval....PYGeve 66 
                 g l p+++ G+Rll   + +      e r+pW +vi +la ++ ++a+    P+Ge++
  CTQ29147.1 314 GRLDPAQHRGRRLLSSVERWLelhpAEKRQPWATVIPQLAgQAWQAAVasnePFGEAQ 371
                 7899**********9999877444448899**********855554433344999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4362.03
//
Query:       CTQ29148.1  [L=429]
Description: isochorismate synthase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-65  219.0   0.0    9.9e-65  218.7   0.0    1.1  1  Chorismate_bind  chorismate binding enzyme


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.7   0.0   5.5e-69   9.9e-65       3     258 .]     169     419 ..     167     419 .. 0.96

  Alignments for each domain:
  == domain 1  score: 218.7 bits;  conditional E-value: 5.5e-69
                      CHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETT.EEEEEEESSEEEEEETTSEEEEECEEEEEEHS CS
  Chorismate_bind   3 edYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleled.sellgaSPElllkveggrrietepiaGTrarg 95 
                       +++++++++ ++i+ag+++kvvl+r+++++++a++d++++++a r+ n ++++fl+ +++ + ++g++PE+l +++g   ++te++aGT a +
       CTQ29148.1 169 PQWQAMIARATKAISAGEMDKVVLARATDLQFAAPLDAVSIMAASRRSNLNCFHFLMAFNArQAFFGSTPERLWRRRGA-LLRTEALAGTVANH 261
                      58*******************************************************99875778************65.************** PP

                      SSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESHHH CS
  Chorismate_bind  96 ktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkkr 189
                      +++++ ++l+++l++d+K+++E++++v+ i+++L++   +++++v   ++v r+++v+hl   i  el+   +  ++l +l Pt+av+G+P+++
       CTQ29148.1 262 QEDAKAQQLADWLMKDDKNQRENMLVVEDICQRLQSE--ASTLDV-LPPQVVRLRKVQHLRRCIWTELAA-PDDSRCLLQLQPTAAVAGLPRRA 351
                      ************************************9..8*****.899*******************95.667788888************** PP

                      HHHHHHHHSSS--TTTTSEEEEEETTS-EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 190 ameiidelEearRgvYaGavgyldadgeaelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      a+ +i+++E+++R++YaG+ gyl+  +  e++v++R+a v++++lrl+aGaGIv  Sd+++E++E+ +K
       CTQ29148.1 352 ALAFIQRHEPFSREWYAGSAGYLSLAQ-SEFCVALRSAKVNHDTLRLYAGAGIVSGSDAQQEWQEIDNK 419
                      ************************775.8***********9999*********************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 3334.98
//
Query:       CTQ29149.1  [L=153]
Description: putative acyltransferase with acyl-CoA N-acyltransferase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-18   65.7   0.0    4.1e-18   65.5   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    4.2e-09   36.7   0.1    5.2e-09   36.4   0.1    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.9e-08   33.6   0.0    5.5e-08   33.1   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.9e-07   31.2   0.1    4.8e-07   29.9   0.1    1.6  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.015   16.0   0.2       0.12   13.1   0.1    2.0  2  Acetyltransf_5   Acetyltransferase (GNAT) domain
      0.042   14.0   0.0      0.071   13.2   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   1.4e-21   4.1e-18      28     126 ..      45     149 ..       9     150 .. 0.88

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 1.4e-21
  Acetyltransf_10  28 egealllvaeeggkivGviel.rdgs.....hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavgeeqee 115
                       ge+ +l+  ++g++v ++++ ++++      i++++V+p++rg ++g +L+e++++ ++++ +++++ + a+ + ++fY ++GF++v+e+  e
       CTQ29149.1  45 VGENRHLLGWRDGELVAYARIlKSEEefapvVIGRVIVSPAARGAKLGYQLMEQALASCQQHWPQKAIYLGAQAHLQSFYAHFGFTPVTEVYDE 138
                      67888999999**********888889********************************9999999**************************** PP

  Acetyltransf_10 116 nGirfvpMeke 126
                      +Gi ++ M++e
       CTQ29149.1 139 DGIPHIGMARE 149
                      ********975 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   1.7e-12   5.2e-09      28     117 .]      43     129 ..      15     129 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.7e-12
                     HHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  28 fsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYeklGF 117
                         ++++l++ +dgel++++++lk  + +   ++i ++ Vsp++rg  lG +L+e+++  + ++   k+i+l  +++    + +Y  +GF
      CTQ29149.1  43 DLVGENRHLLGWRDGELVAYARILKSEE-EFAPVVIGRVIVSPAARGAKLGYQLMEQALASCQQHwPQKAIYLGAQAHL---QSFYAHFGF 129
                     4445567888899***************.45559999****************************88899***776666...****88**9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.8e-11   5.5e-08      10      75 ..      55     130 ..      24     131 .. 0.68

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.8e-11
                     ETTEEEEEEEEEEES.....TCTEEEEE-GGGTTSSHHHHHHHH......TT..SE.EEEE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  10 ddgkivGfialslld.....aeitrlaVdpeyrgkGiGraLlea......ae..kg.iile.qlelnaekaikfYeklGFe 75 
                     +dg+ v ++++  ++       i+r+ V+p++rg  +G +L+e       ++  ++ i l  q++l     ++fY+++GF+
      CTQ29149.1  55 RDGELVAYARILKSEeefapVVIGRVIVSPAARGAKLGYQLMEQalascqQHwpQKaIYLGaQAHL-----QSFYAHFGFT 130
                     3478888888777778888778888*****************953444431143221335567777.....77*******8 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   1.6e-10   4.8e-07      12     127 ..      19     131 ..       9     132 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.6e-10
                     HHHHHHHHHTT----H..HHHHHHHHHHTTSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHT. CS
  Acetyltransf_9  12 evlellkyaFqdeespleeireyfrklleesrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlaraleemree. 105
                     + l+l +++F +e++ ++ ++   ++l++e+r+l+ +++gelv+ +++l+ e     +++    ++ V v p  rg ++  +L+++al+ ++++ 
      CTQ29149.1  19 ALLKLRSEVFVEEQQCVY-QDVDGDDLVGENRHLLGWRDGELVAYARILKSE-----EEFAPVVIGRVIVSPAARGAKLGYQLMEQALASCQQHw 107
                     6789999*****999995.445789********************9999875.....8899999*****************************98 PP

                     T--EEEE--SSH..HHHHTTT-EE CS
  Acetyltransf_9 106 gqplsllfPssi..piYrrfGyei 127
                      q+ ++l + +   ++Y +fG+ +
      CTQ29149.1 108 PQKAIYLGAQAHlqSFYAHFGFTP 131
                     99999999955344********86 PP

>> Acetyltransf_5  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.9e-05      0.12       1      54 [.      23      71 ..      23      75 .. 0.94
   2 ?    0.7   0.0       0.3   8.9e+02      79      95 ..      75      91 ..      69      97 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.9e-05
  Acetyltransf_5  1 LRyevFreemgaegeaaapeldiDefDavcdhllvideaeevVGtyRllrpdea 54
                    LR evF+ee +   ++    +d D+     +hll +++ e +V++ R+l+++e+
      CTQ29149.1 23 LRSEVFVEEQQCVYQD----VDGDDLVGENRHLLGWRDGE-LVAYARILKSEEE 71
                    899**********999....*******************9.********99876 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.3
  Acetyltransf_5 79 lElgRscvhpeyRnkra 95
                    + +gR++v+p+ R+ + 
      CTQ29149.1 75 VVIGRVIVSPAARGAKL 91
                    679********998765 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.4e-05     0.071       9      56 ..      57     106 ..      50     109 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.4e-05
  Acetyltransf_CG   9 geevafleYevrkeg..vldfthTeVpeelrGkGiAkkLvkaalddaree 56 
                      ge va+++  +++e+   +++  ++V+++ rG  ++ +L+++al   +++
       CTQ29149.1  57 GELVAYARILKSEEEfaPVVIGRVIVSPAARGAKLGYQLMEQALASCQQH 106
                      55666666642333344789999*********************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1168.90
//
Query:       CTQ29150.1  [L=306]
Description: binuclear zinc phosphodiesterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-20   71.9   0.0    1.4e-09   37.8   0.0    2.1  2  Lactamase_B_2  Beta-lactamase superfamily domain
    3.6e-06   27.1   0.1    8.1e-06   26.0   0.1    1.6  1  Lactamase_B    Metallo-beta-lactamase superfamily
    0.00015   21.3   0.1    0.00062   19.4   0.0    1.9  2  Lactamase_B_4  tRNase Z endonuclease
  ------ inclusion threshold ------
        0.2   11.7   0.4       0.33   11.0   0.4    1.2  1  SurA_N         SurA N-terminal domain


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   3.1e-13   1.4e-09       4     133 ..      36     153 ..      34     159 .. 0.80
   2 !   32.2   0.0   1.6e-11     7e-08     132     201 .]     202     271 ..     165     271 .. 0.81

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 3.1e-13
                    EES--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCC...C--EE..EEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTS CS
  Lactamase_B_2   4 LiDagpdlrqqalralqPvelrdelppidaVllthaHyDHlaglltlre...lrpkk..lplyapkgvlavleanfvylaleeepavnvheldwge 94 
                    L+D+g ++  q+l++  P +    + +++ +++th H DHl gl+ l     +++++  l+ly+pkg+ + +e+ +    +  +   +++ ++ g 
     CTQ29150.1  36 LFDCGEGTQHQFLHT--PYH----PGKLNKIFITHLHGDHLFGLPGLLCsrsMQGNSlpLTLYGPKGLKEFVETALRLSGSWTD--YPLTIIEVGP 123
                    89*****76663333..333....668999***********999988886645555588999*************887777766..8899999999 PP

                    EEEECSTTEEEEEEEE-EE--CTCCE-TTTSEEEEEECT CS
  Lactamase_B_2  95 sfelgdggleitatparhksgrrldrnagdtlGlriegg 133
                     + ++++g ++ta p++h  +         ++G+ri+++
     CTQ29150.1 124 GLVFDEEGYRVTAYPLSHPVE---------CYGYRIAQH 153
                    9999999*9999998877665.........599999854 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 1.6e-11
                    CTTEEEEEESS-S---HHHHHHHCT-SEEEEE-S-SSTTHHHH..HHT---STSHHHHCTTSSSSEEEEESB CS
  Lactamase_B_2 132 gggkrvyyigDtgyipeeigerlggadllllditayeddemir..hmgHltpeeaveaaadlgakrlvliHi 201
                    ++gk+++  gDt+ +p+++ e+ +gad+++++ t+ +     +  + gH++ ++++++a+++g+++l+ +H+
     CTQ29150.1 202 TPGKTLAIFGDTAPCPQAL-EMARGADVMVHETTLEQAMAE-KanSRGHSSSQQTAALAKEAGVGTLIATHF 271
                    799*************775.5***********997776554.359**************************7 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   1.8e-09   8.1e-06      19     133 ..      36     142 ..      34     149 .. 0.72

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.8e-09
                  EES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCHCGCCEEEEETTTEEC CS
  Lactamase_B  19 LiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagvsadkpdvdeeeldgn 116
                  L+D+G +t+ + +        + p ++  +++THlH DH +gl+gl   +       +++++ +++  +  ++        g + d p + +e+++g 
   CTQ29150.1  36 LFDCGEGTQHQFLH-----TPYHPGKLNKIFITHLHGDHLFGLPGLLCSRSMQGNSLPLTLYGPKGLKEFVETALRL---SGSWTDYPLTIIEVGPGL 125
                  89999999999997.....89************************98666666666666666655555555444443...456666666666666666 PP

                  CCTEEEEEHECTTSTSC CS
  Lactamase_B 117 aggrralyvtggpghgh 133
                  +++ +++ vt  p++++
   CTQ29150.1 126 VFDEEGYRVTAYPLSHP 142
                  66666666666666665 PP

>> Lactamase_B_4  tRNase Z endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.4e-07   0.00062      13      56 ..      20      66 ..      11      72 .. 0.77
   2 ?   -1.6   0.0       0.5   2.2e+03      30      40 ..     277     287 ..     276     290 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.4e-07
  Lactamase_B_4 13 PlllLqlds....krYlfGkvgEgtQRavneqkvrlsklesiFLtgkv 56
                   ++++L+l++    + +lf ++gEgtQ  + +     +kl++iF+t+ +
     CTQ29150.1 20 TSIILNLQQptraEMWLF-DCGEGTQHQFLHTPYHPGKLNKIFITHLH 66
                   5555554432013669**.**************************987 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.5
  Lactamase_B_4  30 gEgtQRavneq 40 
                    +Eg++R++ e 
     CTQ29150.1 277 AEGCLRMLAEC 287
                    7*****99885 PP

>> SurA_N  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   7.4e-05      0.33      57      97 ..     220     260 ..     218     265 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.4e-05
      SurA_N  57 lqeaektgirvddeelnqaiaeiAkeNkltldqlraalaed 97 
                 l++a+ + + v +++l+qa+ae A++ + + +q +aala++
  CTQ29150.1 220 LEMARGADVMVHETTLEQAMAEKANSRGHSSSQQTAALAKE 260
                 6799*********************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2399.69
//
Query:       CTQ29151.1  [L=485]
Description: NADH:ubiquinone oxidoreductase, membrane subunit N [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-89  297.8  27.5    1.6e-88  296.8  27.5    1.5  1  Proton_antipo_M  Proton-conducting membrane transporter
    7.7e-06   25.4   4.8    3.2e-05   23.4   4.8    2.1  1  NADHdeh_related  NADH dehydrogenase I, subunit N related prot
  ------ inclusion threshold ------
      0.054   14.0   2.6        1.1    9.8   0.0    3.3  2  NADH_dehy_S2_C   NADH dehydrogenase subunit 2 C-terminus


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.8  27.5   2.6e-92   1.6e-88       1     292 [.     122     420 ..     122     421 .. 0.97

  Alignments for each domain:
  == domain 1  score: 296.8 bits;  conditional E-value: 2.6e-92
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskal.elglnslelllllllllvgll 93 
                      an+L++l+lg+El++lpl+ L+g+++++++sleAs+k+++l++++s++LL+g++l+y+++g+l+f +l k l +++l+++ ll++l l++vgl 
       CTQ29151.1 122 ANHLAALFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYANSGNLSFLALGKSLaDNMLHEPLLLAGLGLMIVGLG 215
                      79********************************************************************999********************* PP

  Proton_antipo_M  94 vKsaqvplhlWlpdayveaPtpvsallAatlvkagvlllirllllla..vssneisqlllilaiismllgslvalaqtdiKrllAySsishlGy 185
                      +K+++vp+hlW+pd+y++aP+pvs++l at++k+++++++++l+l++    s++++ +l ++a++s+++g+l+al+qt+iKrll+ySsishlGy
       CTQ29151.1 216 FKLSLVPFHLWTPDVYQGAPAPVSTFL-ATASKIAIFGVVMRLFLYMpvGNSEAVRVVLGLIAFASIIFGNLMALSQTNIKRLLGYSSISHLGY 308
                      ***************************.9******************9889999**************************************** PP

  Proton_antipo_M 186 mlialav..atqygveaaiihllthalfkallFllagsviyere..ktrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLeaa 275
                      +l+al++  ++++++ea+ ++l  + +++++ F +++ +++     +++++++y+gL++++Pil++v++v++lslaG+P+t+gF++kf++L++ 
       CTQ29151.1 309 LLVALIAlqSGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRgpDADSLFSYRGLFWHRPILSAVMTVMMLSLAGIPMTLGFIGKFYVLAVG 402
                      ******9999**************************99987733369*********************************************** PP

  Proton_antipo_M 276 vavslillvla.vvasvl 292
                      v+++l++lv+a vv+s++
       CTQ29151.1 403 VHAHLWWLVAAvVVGSAI 420
                      ***********9998887 PP

>> NADHdeh_related  NADH dehydrogenase I, subunit N related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   4.8   5.3e-09   3.2e-05      86     173 ..     118     209 ..     100     259 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 5.3e-09
  NADHdeh_related  86 vvtgdvfnftlfl..aliGianiGiv.aavkkefvleaafnyGlvaliatlplfggaalilastGtlsifelaklagdvlliaklllv.lGv 173
                      +++g     +lfl   li +   G+v  a++++  lea+ +y +++  a+ +l+ g al+ a++G ls + l k   d +l + lll+ lG+
       CTQ29151.1 118 LLAGANHLAALFLgiELISLPLFGLVgYAFRQKRSLEASIKYTILSAAASSFLLFGMALVYANSGNLSFLALGKSLADNMLHEPLLLAgLGL 209
                      3444444445664116899999****88************************9999****************99977766666655542443 PP

>> NADH_dehy_S2_C  NADH dehydrogenase subunit 2 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.2      0.07   4.2e+02      37      54 ..     375     392 ..     368     393 .. 0.77
   2 ?    9.8   0.0   0.00019       1.1       1      43 [.     422     465 ..     422     475 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.07
                     -HHHHHHHHS-TT--STH CS
  NADH_dehy_S2_C  37 latltvlSillLpltpli 54 
                     ++t ++lS+ ++p+t+ +
      CTQ29151.1 375 VMTVMMLSLAGIPMTLGF 392
                     5677889*******9866 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00019
                     HHHHHHHHHT--SS-------SS-..--SS------SS-HHHHHH CS
  NADH_dehy_S2_C   1 LFFYLRLsYstsLTlfPntnnskm..kwrlsstkptlllatltvl 43 
                     L++YLR++ s +L   P + n  +  +w++s      l++ l+vl
      CTQ29151.1 422 LYYYLRVAVSLYL-SAPEQLNRDApsNWQYSAGGIVVLISALLVL 465
                     9************.****999876225887777666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 3826.46
//
Query:       CTQ29152.1  [L=509]
Description: NADH dehydrogenase I chain M, membrane subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-69  234.4  27.1    2.9e-69  233.5  27.1    1.5  1  Proton_antipo_M  Proton-conducting membrane transporter
  ------ inclusion threshold ------
       0.11   12.6   0.1       0.11   12.6   0.1    3.7  4  Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), 
          1   10.1   0.0          1   10.1   0.0    5.4  3  PrgI             PrgI family protein


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.5  27.1   4.8e-73   2.9e-69       2     291 ..     134     430 ..     133     434 .. 0.91

  Alignments for each domain:
  == domain 1  score: 233.5 bits;  conditional E-value: 4.8e-73
  Proton_antipo_M   2 ndLlllylglElvllplylLiglwkkk....pksleAslklflltllgsliLLlgilll....ynltgtlefeelskalelglnslelllllll 87 
                       d++l+++++E++l+p+y+Li+lw++k    + ++ A+ k+f++t ++ l++L++il+l    +n+tg   f++  +  ++ ++     ll+l 
       CTQ29152.1 134 IDMFLFFFFWEMMLVPMYFLIALWGHKasdgKTRITAATKFFIYTQASGLVMLIAILALafvhFNATGVWTFNYEDLL-KTPMSHGVEYLLMLG 226
                      6999********************988222246899********************8655555899997777776666.446666677788899 PP

  Proton_antipo_M  88 llvgllvKsaqvplhlWlpdayveaPtpvsallAatlvkagvlllirllllla.vssneisqlllilaiismllgslvalaqtdiKrllAySsi 180
                      ++++++vK+++vplh Wlpda+ +aPt++s+ lA++l+k ++++l+r+ l+l+  +s e + + ++l++i++++g+ +a aqtdiKrl+Ay s+
       CTQ29152.1 227 FFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFpNASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSV 320
                      99**********************************************999888**************************************** PP

  Proton_antipo_M 181 shlGymlialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLea 274
                      sh+G++lia+ +++q ++++a+i++++h+l+ a+lF+l g++ yer +trd+r++ggL+ k+  l ++ +++++++ G+P+t +F+++f+iL +
       CTQ29152.1 321 SHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQL-YERLHTRDMRQMGGLWSKIKWLPAMSMFFAVATLGMPGTGNFVGEFMILFG 413
                      ***************************************888.9999*********************************************** PP

  Proton_antipo_M 275 avavslillvlavvasv 291
                      +++v + + v+ +++ v
       CTQ29152.1 414 SYKVVPTITVISTFGLV 430
                      ***99988887766655 PP

>> Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.9e-05      0.11       3      40 ..      70     105 ..      68     117 .. 0.84
   2 ?   -3.0   0.2       1.4   8.3e+03      21      35 ..     180     194 ..     172     200 .. 0.53
   3 ?   -2.7   1.2       1.1   6.5e+03      27      43 ..     419     435 ..     413     439 .. 0.84
   4 ?    0.4   0.4      0.12   7.2e+02      18      32 ..     462     476 ..     458     478 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
  Proton_antipo_N   3 tWlsvgglsieigfllDklsalmllvvtfvsllvhlYS 40 
                       W++   + i+i + +D+ls+lm+++  ++++l  l S
       CTQ29152.1  70 PWIP--RFGISIHLAIDGLSLLMVVLTGLLGVLAVLCS 105
                      6877..4559*******************999987755 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
  Proton_antipo_N  21 lsalmllvvtfvsll 35 
                       s l++l+  +  ++
       CTQ29152.1 180 ASGLVMLIAILALAF 194
                      444444444444444 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.1
  Proton_antipo_N  27 lvvtfvsllvhlYSigY 43 
                       ++t++s++ +++++ Y
       CTQ29152.1 419 PTITVISTFGLVFASVY 435
                      67999999999999877 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.12
  Proton_antipo_N  18 lDklsalmllvvtfv 32 
                      l +ls++ llvv +v
       CTQ29152.1 462 LRELSIILLLVVLLV 476
                      5679********998 PP

>> PrgI  PrgI family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -13.7  17.3         3   1.8e+04      64      64 ..     158     158 ..      85     244 .. 0.65
   2 ?    0.2   3.1      0.22   1.3e+03      26      80 ..     294     347 ..     259     357 .. 0.53
   3 ?   10.1   0.0   0.00018         1       8      45 ..     451     489 ..     448     499 .. 0.83

  Alignments for each domain:
  == domain 1  score: -13.7 bits;  conditional E-value: 3
        PrgI  64 y 64 
                  
  CTQ29152.1 158 G 158
                 1 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.22
        PrgI  26 vlallvaiglylllrafl.eelasvlvillavPvaalgfykkdglplekylkaiik 80 
                 ++++ + +g+++++ +   + l ++   +  + ++++++y  ++l ++  + ++i+
  CTQ29152.1 294 GVIG-IFYGAWMAFAQTDiKRLIAYTS-VSHMGFVLIAIYTGSQLAYQGAVIQMIA 347
                 1221.1333333333333222222222.2234566666666666666666665555 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00018
        PrgI   8 eyeekiffgLtlRQliflvlallvaiglylllrafl.ee 45 
                 e+  k + g++lR+l +++l +++ ++l ++ + +l ++
  CTQ29152.1 451 EVAAKELPGMSLRELSIILLLVVLLVLLGFFPQPILdTS 489
                 66789999*********************9999998533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 3633.22
//
Query:       CTQ29153.1  [L=613]
Description: NADH:ubiquinone oxidoreductase, membrane subunit L [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-98  327.5  22.9    6.8e-98  327.5  22.9    2.4  3  Proton_antipo_M  Proton-conducting membrane transporter
    7.7e-23   80.3   3.2    7.7e-23   80.3   3.2    3.0  2  Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), 


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.5      0.18   1.6e+03      15      48 ..      12      45 ..       3     119 .. 0.71
   2 !  327.5  22.9  7.6e-102   6.8e-98       1     293 []     133     425 ..     133     425 .. 0.99
   3 ?   -1.5   0.3      0.13   1.2e+03     239     274 ..     452     487 ..     427     526 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.18
  Proton_antipo_M 15 llplylLiglwkkkpksleAslklflltllgsli 48
                     l++++lL+  ++++ ++l+A++ +  ++l++ + 
       CTQ29153.1 12 LIGFVLLAFSRGRWSENLSAAVGMGSVGLAALVT 45
                     6777788888888888888887766666555444 PP

  == domain 2  score: 327.5 bits;  conditional E-value: 7.6e-102
  Proton_antipo_M   1 andLlllylglElvllplylLiglwkkkpksleAslklflltllgsliLLlgilllynltgtlefeelskal..elglnslelllllllllvgl 92 
                      a++Lll+ylg+E+v+l++ylLig+++++pk+ +A++k+f++t++g+++L +++++lyn  gtl+f+e+++ +  +++ +s +l +++l+ll g+
       CTQ29153.1 133 ADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELApqHFANGSTTLQWATLMLLGGA 226
                      79**********************************************************************99999999************** PP

  Proton_antipo_M  93 lvKsaqvplhlWlpdayveaPtpvsall.AatlvkagvlllirlllllavssneisqlllilaiismllgslvalaqtdiKrllAySsishlGy 185
                      + Ksaq+pl++Wl+da +++Ptpvsal+ Aat+v+agv+l++r++ l+  +++e+ +l+ i+++++++l++++al+qtdiKr+lAyS++s++Gy
       CTQ29153.1 227 VGKSAQLPLQTWLADA-MAGPTPVSALIhAATMVTAGVYLIARTHGLFL-MTPEVLHLVGIVGAVTLVLAGFAALVQTDIKRVLAYSTMSQIGY 318
                      ****************.********************************.******************************************** PP

  Proton_antipo_M 186 mlialavatqygveaaiihllthalfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPpt.agFlskfliLeaavav 278
                      m++al+v   ++++aai+hl+tha+fkallFl +gsvi +++++++i+++ggL+k++P++++++lv+  +l++lP+  agF+sk++iL++a+a 
       CTQ29153.1 319 MFLALGV---QAWDAAIFHLMTHAFFKALLFLSSGSVILACHHEQNIFKMGGLRKSIPLVYVCFLVGGAALSALPLItAGFFSKDEILAGAMAN 409
                      *******...899**************************************************************966**************** PP

  Proton_antipo_M 279 slillvla.vvasvlt 293
                      ++i l++a +v++++t
       CTQ29153.1 410 GHINLMVAgLVGAFMT 425
                      ********99999987 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.13
  Proton_antipo_M 239 akkmPilalvllvlllslaGlPptagFlskfliLea 274
                        + P++ l++l ++++   +Pp+ g l++ + L+ 
       CTQ29153.1 452 THHLPLIVLLVLSTFVGALIVPPLEGVLPQTTELAH 487
                      555555555555555555555555555554444433 PP

>> Proton_antipo_N  NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   3.2   8.5e-27   7.7e-23       1      58 []      64     121 ..      64     121 .. 0.98
   2 ?   -2.3   2.1      0.54   4.8e+03      23      36 ..     458     471 ..     457     472 .. 0.86

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 8.5e-27
  Proton_antipo_N   1 lftWlsvgglsieigfllDklsalmllvvtfvsllvhlYSigYMaddegyqRFfayls 58 
                      l+tW+svg+++i +++ lD+ls++ml vvt+v++l+h+++++YM+++egy+RFfay +
       CTQ29153.1  64 LWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMFASWYMRGEEGYSRFFAYTN 121
                      7*******************************************************86 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.54
  Proton_antipo_N  23 almllvvtfvsllv 36 
                      ++ l++ tfv++l+
       CTQ29153.1 458 IVLLVLSTFVGALI 471
                      578999******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.22s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4554.13
//
Query:       CTQ29154.1  [L=100]
Description: NADH-quinone oxidoreductase chain K (NADH dehydrogenase I, chain K) (NDH-1, chain K) (NUO11) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-21   73.6   6.4    8.8e-21   73.5   6.4    1.0  1  Oxidored_q2      NADH-ubiquinone/plastoquinone oxidoreductase
     0.0099   15.9   1.8      0.013   15.5   1.8    1.2  1  NAD4L            NADH dehydrogenase subunit 4L (NAD4L)
  ------ inclusion threshold ------
      0.034   13.6   0.2      0.045   13.2   0.2    1.3  1  DUF4481          Domain of unknown function (DUF4481)
      0.057   12.9   1.1      0.057   12.9   1.1    1.9  3  ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family
      0.065   13.3   1.3      0.079   13.0   1.3    1.2  1  DUF5392          Family of unknown function (DUF5392)
        8.8    6.4   7.9          9    6.4   0.9    3.0  3  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> Oxidored_q2  NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   6.4   2.9e-24   8.8e-21       3     103 ..       8      95 ..       6     100 .] 0.96

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 2.9e-24
                  HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHC.............TTSCGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-BC CS
  Oxidored_q2   3 llliallfliGlygvllrrnllkvliglelisnavnlllvlagvftegtlvitnpatefadplpqalvLtaivigaaetavgLallvrlyreygtddv 100
                  l+l+a+lf++Gl g+++rrnll +li+le++ na+ l++v+ag+++             ++  +q++ ++ai ++aae+++gLall++l+r ++++++
   CTQ29154.1   8 LILAAILFVLGLTGLVIRRNLLFMLISLEIMINAAALAFVVAGSYW-------------GQADGQIMYILAISLAAAEASIGLALLLQLHRRRQNLNI 92 
                  6899******************************************.............9************************************** PP

                  CG- CS
  Oxidored_q2 101 qel 103
                  +++
   CTQ29154.1  93 DSV 95 
                  987 PP

>> NAD4L  NADH dehydrogenase subunit 4L (NAD4L)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.8   4.3e-06     0.013       7      73 ..      12      82 ..       5      95 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.3e-06
       NAD4L  7 lfvllilislllsltrllNlLiilE.nfNvllLlvcllvsveds...riiFivlmvlfvvEvsvgLvvvtv 73
                 + +++ ++ l+   +ll +Li lE  +N   L +++  s+ +    +i++i  ++l   E+s+gL ++  
  CTQ29154.1 12 AILFVLGLTGLVIRRNLLFMLISLEiMINAAALAFVVAGSYWGQadgQIMYILAISLAAAEASIGLALLLQ 82
                33445556667888899999**9994479999999999987544344*******************98754 PP

>> DUF4481  Domain of unknown function (DUF4481)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.5e-05     0.045      89     127 ..      55      93 ..      13      95 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
     DUF4481  89 slgeywvlvllvsLvsvlltvalililhrsnkkinvntD 127
                 + +  ++ +l +sL+++ + + l l+l+ ++++ n+n+D
  CTQ29154.1  55 QADGQIMYILAISLAAAEASIGLALLLQLHRRRQNLNID 93 
                 4455678899***************************99 PP

>> ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.1   1.9e-05     0.057      16      30 ..       6      20 ..       5      26 .. 0.87
   2 ?   -3.9   0.5       3.3   9.8e+03      21      27 ..      42      48 ..      41      49 .. 0.81
   3 ?   -3.1   0.0       1.9   5.6e+03      27      34 ..      75      82 ..      68      88 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.9e-05
                     HHHHHHHHHHHHHHH CS
  ATP1G1_PLM_MAT8 16 gGLifAglLfivGil 30
                      GLi+A++Lf++G++
       CTQ29154.1  6 HGLILAAILFVLGLT 20
                     6************97 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.3
                     HHHHHHH CS
  ATP1G1_PLM_MAT8 21 AglLfiv 27
                     A+l+f+v
       CTQ29154.1 42 AALAFVV 48
                     8999986 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.9
                     HHHHHHHC CS
  ATP1G1_PLM_MAT8 27 vGiliilS 34
                     +G++++l 
       CTQ29154.1 75 IGLALLLQ 82
                     67777765 PP

>> DUF5392  Family of unknown function (DUF5392)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.3   2.7e-05     0.079      23      87 ..      23      91 ..       8      98 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
     DUF5392 23 llkKsskysfislPLllvslinli....llllkaeleedsliaiilyallgAlGlAlfkEsrlkkkeiq 87
                ++++ + +++isl +++ ++   +    + + +a+ +   ++ai l+a+ + +GlAl+   + ++++++
  CTQ29154.1 23 VIRRNLLFMLISLEIMINAAALAFvvagSYWGQADGQIMYILAISLAAAEASIGLALLLQLHRRRQNLN 91
                5789999*****998765443222011145667777778889999************988877777765 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.9     0.003         9      19      38 ..       7      26 ..       5      27 .. 0.89
   2 ?    0.4   0.1      0.22   6.6e+02      22      32 ..      41      51 ..      37      55 .. 0.62
   3 ?    2.4   0.1     0.053   1.6e+02      25      42 ..      71      88 ..      63      89 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.003
                     XXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor 19 fltaaGllallggllLlvkr 38
                     +l +a++l +lg ++L+++r
       CTQ29154.1  7 GLILAAILFVLGLTGLVIRR 26
                     588999***********999 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.22
                     XXXXXXXXXXX CS
  Gram_pos_anchor 22 aaGllallggl 32
                     aa+l+ +++g+
       CTQ29154.1 41 AAALAFVVAGS 51
                     45555555554 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.053
                     XXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor 25 llallggllLlvkrRKke 42
                     + a +g +lLl   R+++
       CTQ29154.1 71 AEASIGLALLLQLHRRRQ 88
                     446677777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 811.92
//
Query:       CTQ29155.1  [L=184]
Description: NADH:ubiquinone oxidoreductase, membrane subunit J [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-33  115.8  18.1    1.6e-33  115.4  18.1    1.1  1  Oxidored_q3      NADH-ubiquinone/plastoquinone oxidoreductase
     0.0081   16.2   7.0      0.022   14.8   7.0    1.8  1  DUF2109          Predicted membrane protein (DUF2109)
  ------ inclusion threshold ------
      0.046   12.8   2.4      0.047   12.7   1.6    1.3  1  Frizzled         Frizzled/Smoothened family membrane region
       0.53    9.9   5.3        9.6    5.8   1.5    2.4  2  PIRT             Phosphoinositide-interacting protein family
        2.3    6.4  11.2        2.7    6.2  11.2    1.0  1  DUF2070          Predicted membrane protein (DUF2070)
        4.4    6.3  18.5        5.8    5.9  18.5    1.1  1  ABC2_membrane_3  ABC-2 family transporter protein
        9.1    5.5   6.0        5.9    6.1   4.3    1.5  2  DUF3810          Protein of unknown function (DUF3810)


Domain annotation for each model (and alignments):
>> Oxidored_q3  NADH-ubiquinone/plastoquinone oxidoreductase chain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4  18.1   6.4e-37   1.6e-33       3     144 .]      17     158 ..      15     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: 115.4 bits;  conditional E-value: 6.4e-37
                  HHHHH-SBHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHIIIIIHHHHHHHHHHHS...STTS----TTCHHHHHHHHHHHHHHHHHHHTT--... CS
  Oxidored_q3   3 llvitsknpvysalfLilsfvgvaglfillgaeFlallqilvYvGAilvlflFvimll...esaeeeepeslsrslalaalligllllallllllles 97 
                  l v+t++npv++ l+Li+s++++ag+f+ lga+F ++l i+vY+GAi+vlf+Fv+m+l    ++ e+e+++l+++++++ ++++++ll+++++++l  
   CTQ29155.1  17 LRVVTHTNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLnlgGTEIEQERKWLQPGIWIGPAILSAVLLVVIVYAILGI 114
                  789*******************************************************999778899999***********************99975 PP

                  ...--------TT-HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHC CS
  Oxidored_q3  98 sssavdaqvadvsnieaigsllftkyllpfelasllLLvaligaivl 144
                  + +          n +++g +lf+ y+l++elas+lLL++l++a ++
   CTQ29155.1 115 NDQG---IDGAAINAKEVGIALFGPYVLAVELASMLLLAGLVVAFHI 158
                  4444...445667*******************************876 PP

>> DUF2109  Predicted membrane protein (DUF2109)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   7.0   8.6e-06     0.022       3      40 ..       6      43 ..       4      75 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.6e-06
     DUF2109  3 liigiiailaairilleknraekLlylnvlnFaiaali 40
                +i+g+iaila++r++   n ++ Llyl +   aia++ 
  CTQ29155.1  6 YICGLIAILATLRVVTHTNPVHALLYLIISLLAIAGVF 43
                79**************************9999999975 PP

>> Frizzled  Frizzled/Smoothened family membrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.6   1.8e-05     0.047     106     217 ..      49     163 ..      37     179 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.8e-05
    Frizzled 106 YyfsmaasiWw..viLtltwflaaglkwgseaiekksqyfHlvaWalpavktilvla..lskvdgdelsGiCfvgnqnsealrgfvlaPllvylliGll 200
                 Y+ +   +i +   i+ l  f+  +l++g   ie++ +++    W+ pa++++++l+  + ++ g + +Gi      n + + + ++ P+++++ ++ +
  CTQ29155.1  49 YFAGALEIIVYagAIMVLFVFVVMMLNLGGTEIEQERKWLQPGIWIGPAILSAVLLVviVYAILGINDQGIDGAAI-NAKEVGIALFGPYVLAVELASM 146
                 5555556666633478888888999*************************99877651167899999999987555.5666888889************ PP

    Frizzled 201 fllagfvslfrirkvlk 217
                 +llag+v  f+i ++ +
  CTQ29155.1 147 LLLAGLVVAFHIGREER 163
                 ***********977655 PP

>> PIRT  Phosphoinositide-interacting protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   1.5    0.0038       9.6      51     100 ..      56     108 ..      53     116 .. 0.71
   2 ?    5.7   1.2    0.0042        11      75     105 ..     123     155 ..     101     169 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0038
        PIRT  51 ivlsvGgavfllGvvittlsrnstlknkdkevf...klsGpaflslGlmllvc 100
                 i++  G+ + l+  v+  l+   t  +++++       +Gpa+ls  l+++++
  CTQ29155.1  56 IIVYAGAIMVLFVFVVMMLNLGGTEIEQERKWLqpgIWIGPAILSAVLLVVIV 108
                 677788888888888888876666555555555233469******99888765 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0042
        PIRT  75 lknkdkevfklsGpaflslGl..mllvcGlvwv 105
                   n ++    l+Gp +l++ l  mll+ Glv  
  CTQ29155.1 123 AINAKEVGIALFGPYVLAVELasMLLLAGLVVA 155
                 33444445699***999876655*******965 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  11.2     0.001       2.7      42     171 ..       3     156 ..       1     167 [. 0.74

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.001
     DUF2070  42 llfglpalvaflltlpvlrilggrltykrslflalltelivviisllaillsall.qalvllalvlslalvfalrllvlvavsdesllkav......lp 133
                 ++f++  l+a+l+tl+v+       t   +++l l++ l++++ +++++ +++    +++++a ++ + +vf++ +l l  +  e+++k +       p
  CTQ29155.1   3 FAFYICGLIAILATLRVVTH-----TNPVHALLYLIISLLAIAGVFFSLGAYFAGaLEIIVYAGAIMVLFVFVVMMLNLGGTEIEQERKWLqpgiwiGP 96 
                 78999999999999999954.....45667888888888888877777776644477888889999999999999999999999999998866655444 PP

     DUF2070 134 aliqpllailllvly......................fspesfllllllslifalavylf 171
                 a++  +l++++++++                      f+p+  ++ l+++l++a +v++f
  CTQ29155.1  97 AILSAVLLVVIVYAIlgindqgidgaainakevgialFGPYVLAVELASMLLLAGLVVAF 156
                 444444444444444899999999999999998888877777776677666666666666 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  18.5    0.0023       5.8     219     339 ..       7     153 ..       3     158 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0023
  ABC2_membrane_3 219 lqlllilllafglgipfgnlglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglfp....ledlpsalkwifsiiPffa 308
                      ++ l+++l  +   ++ +n + +ll++++ +la++ +++ l++ f  + + ++ ++++++l+ +++++l +    +e+  ++l+   +i P   
       CTQ29155.1   7 ICGLIAILATLR-VVTHTNPVHALLYLIISLLAIAGVFFSLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLggteIEQERKWLQPGIWIGPAIL 99 
                      223333333444.89999******************************9999999999985555444442233456666699999999999999 PP

  ABC2_membrane_3 309 pglgllrli.....tgdplwe.......................illsliilalfavvy 339
                       +++l+ ++           +                       ++  l+ ++l+a ++
       CTQ29155.1 100 SAVLLVVIVyailgI-----NdqgidgaainakevgialfgpyvLAVELASMLLLAGLV 153
                      999999888444443.....234555777888888888888886555555555555444 PP

>> DUF3810  Protein of unknown function (DUF3810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.58   1.5e+03      34      74 ..      10      43 ..       2      55 .. 0.38
   2 ?    6.1   4.3    0.0023       5.9      26      81 ..      55     115 ..      32     120 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.58
     DUF3810 34 llvilylvlaiklkkrkkkkkrllkvllrvllvllvvyflf 74
                l++il+ ++++   +++    + +++ll +++ ll++  +f
  CTQ29155.1 10 LIAILATLRVV---THT----NPVHALLYLIISLLAIAGVF 43
                33333333333...122....22222333222222222222 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0023
     DUF3810  26 ellivllillvilylvlai......klkkrkkkkkrllkvllrvllvllvvyflftllwgln 81 
                 e+++++ +++v++++v+++         ++++k+ +   +++ ++l +++++++ ++  g+n
  CTQ29155.1  55 EIIVYAGAIMVLFVFVVMMlnlggtE-IEQERKWLQPGIWIGPAILSAVLLVVIVYAILGIN 115
                 55555555555555555555999954.44566667777788888888888888888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       999  (0.0557198); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 1493.94
//
Query:       CTQ29156.1  [L=180]
Description: NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-14   51.3  16.9      7e-09   35.1   0.8    2.2  2  Fer4             4Fe-4S binding domain
    2.4e-11   44.0  10.6      4e-11   43.3  10.6    1.3  1  Fer4_7           4Fe-4S dicluster domain
    1.8e-10   41.6   5.7    0.00013   22.8   0.0    2.3  2  Fer4_16          4Fe-4S double cluster binding domain
      1e-09   38.4   8.8    0.00016   21.7   4.7    2.2  2  Fer4_21          4Fe-4S dicluster domain
    2.1e-09   37.7   1.1     0.0013   19.2   0.0    2.2  2  Fer4_8           4Fe-4S dicluster domain
      4e-09   36.5  19.4      9e-06   25.7  12.9    1.8  2  Fer4_10          4Fe-4S dicluster domain
    5.4e-08   32.9   9.4    3.4e-07   30.3  10.3    1.8  2  Fer4_9           4Fe-4S dicluster domain
    1.2e-07   32.2   4.5     0.0051   17.3   0.6    2.3  2  Fer4_17          4Fe-4S dicluster domain
    7.4e-06   25.8  12.7       0.01   15.8   0.9    2.4  2  Fer4_2           4Fe-4S binding domain
    5.3e-05   23.1  17.3     0.0046   17.0   0.9    2.3  2  Fer4_6           4Fe-4S binding domain
    0.00069   19.9  13.0      0.068   13.7   1.2    2.3  2  Fer4_4           4Fe-4S binding domain
      0.003   17.7   4.0       0.54   10.5   1.1    2.2  2  Fer4_18          4Fe-4S dicluster domain
     0.0087   16.9   3.6     0.0087   16.9   3.6    2.3  2  Fer4_3           4Fe-4S binding domain
  ------ inclusion threshold ------
      0.064   13.8  12.2       0.53   10.9   1.4    2.6  2  Fer4_13          4Fe-4S single cluster domain of Ferredoxin I
      0.066   13.3   5.3        1.2    9.3   0.2    2.2  2  ETF_QO           Electron transfer flavoprotein-ubiquinone ox
        1.4    9.8  14.9        3.1    8.7   2.2    2.2  2  Fer4_22          4Fe-4S dicluster domain
        2.4    8.5   5.3        2.7    8.3   0.9    2.2  2  c-SKI_SMAD_bind  c-SKI Smad4 binding domain


Domain annotation for each model (and alignments):
>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   9.2   1.9e-07    0.0002       6      24 .]      58      76 ..      56      76 .. 0.94
   2 !   35.1   0.8   6.7e-12     7e-09       2      24 .]      93     115 ..      92     115 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.9e-07
                TTSSS-THHHHHSTTTEEE CS
        Fer4  6 ekCigCGaCvevCPvgAIt 24
                e+C++C++C+ +CPvg+I+
  CTQ29156.1 58 ERCVACNLCAVACPVGCIS 76
                9****************96 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 6.7e-12
                 EEETTTSSS-THHHHHSTTTEEE CS
        Fer4   2 videekCigCGaCvevCPvgAIt 24 
                  i+ ++Ci+CG+C+e+CP+ AI+
  CTQ29156.1  93 RINFSRCIFCGLCEEACPTTAIQ 115
                 599****************9995 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3  10.6   3.7e-14     4e-11       1      52 []      59     113 ..      59     113 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 3.7e-14
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenekgt...ekveidpekClgCgaCvavCPtga 52 
                 rC+ C+ C++aCpv++i+l+++e  +g+   e  +i+ ++C++Cg C+++CPt a
  CTQ29156.1  59 RCVACNLCAVACPVGCISLQKAETVDGRwypEFFRINFSRCIFCGLCEEACPTTA 113
                 8*********************99998766555699****************986 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   2.7   1.1e-06    0.0011       1      26 [.      59      84 ..      59      90 .. 0.90
   2 !   22.8   0.0   1.3e-07   0.00013       1      28 [.      98     123 ..      98     170 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.1e-06
     Fer4_16  1 rCgtCgkCaevCPtnaikekkekeie 26
                rC+ C+ Ca +CP+++i+ +k+++++
  CTQ29156.1 59 RCVACNLCAVACPVGCISLQKAETVD 84
                6******************9888877 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.3e-07
     Fer4_16   1 rCgtCgkCaevCPtnaikekkekeiear 28 
                 rC+ Cg C e+CPt ai+ + ++e+   
  CTQ29156.1  98 RCIFCGLCEEACPTTAIQLTPDFEL--G 123
                 6*****************9955444..3 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   4.7   1.5e-07   0.00016      38      58 ..      57      76 ..      48      77 .. 0.90
   2 !   18.7   0.1   1.3e-06    0.0014       2      25 ..      93     116 ..      92     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.5e-07
     Fer4_21 38 edeCvGCnlCssvCPvedcie 58
                +++Cv+CnlC+  CPv +ci+
  CTQ29156.1 57 AERCVACNLCAVACPV-GCIS 76
                689************9.***7 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.3e-06
     Fer4_21   2 ridedkCigCgkCliaCedtshqa 25 
                 ri+ ++Ci Cg+C  aC++t++q 
  CTQ29156.1  93 RINFSRCIFCGLCEEACPTTAIQL 116
                 688899************888775 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2     4e-06    0.0042      45      64 ..      54      73 ..      21      77 .. 0.71
   2 !   19.2   0.0   1.2e-06    0.0013       2      30 ..      96     125 ..      95     170 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4e-06
      Fer4_8 45 eealwsCttcgaCtevCpvg 64
                 +++++C++c+ C+++Cpvg
  CTQ29156.1 54 PDGAERCVACNLCAVACPVG 73
                57788999999999999986 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.2e-06
      Fer4_8   2 lekCieCgaCqsaCpvlrrtk.khlldarg 30 
                 +++Ci Cg+C++aCp+   +   +    ++
  CTQ29156.1  96 FSRCIFCGLCEEACPTTAIQLtPDFELGEY 125
                 689************655544333333333 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7  12.9   8.5e-09     9e-06       7      56 .]      58     110 ..      55     110 .. 0.95
   2 !   21.5   0.4   1.8e-07   0.00019       3      24 ..      93     126 ..      91     174 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 8.5e-09
     Fer4_10   7 dtCirCgkCvkaCPadl...tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                 ++C+ C+ C  aCP+     ++ ++ + +++ e  r++ ++C++cg C eaCP
  CTQ29156.1  58 ERCVACNLCAVACPVGCislQKAETVDGRWYPEFFRINFSRCIFCGLCEEACP 110
                 79*************889999999999*************************9 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.8e-07
     Fer4_10   3 vidddtCirCgkCvkaCPadl............t 24 
                 +i+ ++Ci Cg C +aCP+++            +
  CTQ29156.1  93 RINFSRCIFCGLCEEACPTTAiqltpdfelgeyK 126
                 688999************9776666655555551 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   4.1   7.6e-05     0.081      33      51 .]      53      75 ..      28      75 .. 0.75
   2 !   30.3  10.3   3.2e-10   3.4e-07       1      51 []      59     114 ..      59     114 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.6e-05
      Fer4_9 33 e....eaCigCgaCveaCpkgai 51
                +    e+C+ C+ C+ aCp g+i
  CTQ29156.1 53 DpdgaERCVACNLCAVACPVGCI 75
                1334589************9987 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 3.2e-10
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase......eaCigCgaCveaCpkgai 51 
                 +C+ C+ C  aCp g ++ ++ae+ +  r++ e      ++Ci+Cg C+eaCp++ai
  CTQ29156.1  59 RCVACNLCAVACPVGCISLQKAETVDG-RWYPEffrinfSRCIFCGLCEEACPTTAI 114
                 6****************9999887755.566668999999**************987 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.6   4.9e-06    0.0051      38      58 ..      52      72 ..      25      74 .. 0.77
   2 !   16.4   0.2   9.2e-06    0.0097      42      58 ..      95     111 ..      76     113 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.9e-06
     Fer4_17 38 ekeekaslCieCgeCerkCPq 58
                 + + a++C+ C++C+ +CP 
  CTQ29156.1 52 RDPDGAERCVACNLCAVACPV 72
                345799**************6 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 9.2e-06
     Fer4_17  42 kaslCieCgeCerkCPq 58 
                 ++s+Ci Cg+Ce++CP 
  CTQ29156.1  95 NFSRCIFCGLCEEACPT 111
                 7899***********96 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   4.9   2.8e-05     0.029       7      21 ..      57      71 ..      52      72 .. 0.89
   2 !   15.8   0.9   9.9e-06      0.01       4      22 .]      93     111 ..      90     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.8e-05
      Fer4_2  7 tdrCigCgaCvsaCP 21
                ++rC++C+ C  aCP
  CTQ29156.1 57 AERCVACNLCAVACP 71
                68************* PP

  == domain 2  score: 15.8 bits;  conditional E-value: 9.9e-06
      Fer4_2   4 vvdtdrCigCgaCvsaCPa 22 
                  ++  rCi Cg C  aCP+
  CTQ29156.1  93 RINFSRCIFCGLCEEACPT 111
                 58899*************7 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   9.5   0.00037      0.39       7      24 .]      58      75 ..      57      75 .. 0.91
   2 !   17.0   0.9   4.4e-06    0.0046       7      23 ..      97     113 ..      91     114 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00037
      Fer4_6  7 dkCigCgdCvrvCPegai 24
                ++C+ C+ C+++CP g i
  CTQ29156.1 58 ERCVACNLCAVACPVGCI 75
                89************9976 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4.4e-06
      Fer4_6   7 dkCigCgdCvrvCPega 23 
                 ++Ci Cg C+ +CP+ a
  CTQ29156.1  97 SRCIFCGLCEEACPTTA 113
                 89************855 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   4.7   0.00042      0.44       2      17 .]      58      73 ..      57      77 .. 0.93
   2 !   13.7   1.2   6.5e-05     0.068       2      16 ..      97     111 ..      96     121 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00042
      Fer4_4  2 erCigCgsCvaaCPqg 17
                erC+ C  C  aCP+g
  CTQ29156.1 58 ERCVACNLCAVACPVG 73
                9*************86 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 6.5e-05
      Fer4_4   2 erCigCgsCvaaCPq 16 
                 +rCi Cg C+ aCP+
  CTQ29156.1  97 SRCIFCGLCEEACPT 111
                 69************6 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   1.1   0.00051      0.54      54      74 ..      53      73 ..      44      85 .. 0.83
   2 !    8.1   0.1    0.0028         3      60      74 ..      98     112 ..      90     128 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00051
     Fer4_18 54 kekgagdcidcescvkvcPtg 74
                  +ga  c++c+ c   cP+g
  CTQ29156.1 53 DPDGAERCVACNLCAVACPVG 73
                5577889************98 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0028
     Fer4_18  60 dcidcescvkvcPtg 74 
                  ci c+ c + cPt 
  CTQ29156.1  98 RCIFCGLCEEACPTT 112
                 466666666666653 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  11.8     0.048        51       1      14 [.      60      73 ..      60      74 .. 0.94
   2 !   16.9   3.6   8.3e-06    0.0087       1      13 [.      99     111 ..      99     113 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.048
      Fer4_3  1 CtgCgaCvevCPvg 14
                C+ C++C ++CPvg
  CTQ29156.1 60 CVACNLCAVACPVG 73
                999**********9 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 8.3e-06
      Fer4_3   1 CtgCgaCvevCPv 13 
                 C+ Cg+C+e+CP+
  CTQ29156.1  99 CIFCGLCEEACPT 111
                 ************8 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.6    0.0058       6.1       4      17 ..      58      71 ..      49      76 .. 0.91
   2 ?   10.9   1.4    0.0005      0.53       2      18 ..      95     111 ..      94     112 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0058
     Fer4_13  4 dtCiacgaCvelaP 17
                ++C+ac++C+ ++P
  CTQ29156.1 58 ERCVACNLCAVACP 71
                78********9999 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0005
     Fer4_13   2 DrdtCiacgaCvelaPd 18 
                 + ++Ci cg+C e++P 
  CTQ29156.1  95 NFSRCIFCGLCEEACPT 111
                 5679************7 PP

>> ETF_QO  Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.9    0.0091       9.6      72     103 ..      57      88 ..      22      89 .. 0.92
   2 ?    9.3   0.2    0.0011       1.2      67      93 ..      91     117 ..      86     123 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0091
                 CCC--S--HHHHH-TT--EEE---STT-C--- CS
      ETF_QO  72 aqnCvhCktCdikdpsqniewvvPeGggGPky 103
                 a+ Cv C+ C +  p   i+ +  e  +G  y
  CTQ29156.1  57 AERCVACNLCAVACPVGCISLQKAETVDGRWY 88 
                 689*******************9999999777 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0011
                 EEEE-CCC--S--HHHHH-TT--EEE- CS
      ETF_QO  67 klqinaqnCvhCktCdikdpsqniewv 93 
                  ++in + C+ C  C+   p+  i+ +
  CTQ29156.1  91 FFRINFSRCIFCGLCEEACPTTAIQLT 117
                 699***************999999865 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.4     0.023        24       1      19 [.      59      78 ..      59      90 .. 0.74
   2 ?    8.7   2.2    0.0029       3.1       1      18 [.      98     115 ..      98     133 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.023
     Fer4_22  1 rClsCgaCtlvCpt.CsCfd 19
                rC++C+ C+++Cp  C+  +
  CTQ29156.1 59 RCVACNLCAVACPVgCISLQ 78
                7***********96244443 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0029
     Fer4_22   1 rClsCgaCtlvCptCsCf 18 
                 rC+ Cg C  +Cpt    
  CTQ29156.1  98 RCIFCGLCEEACPTTAIQ 115
                 79***********97655 PP

>> c-SKI_SMAD_bind  c-SKI Smad4 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3      0.19     2e+02      25      37 ..      57      69 ..      43      73 .. 0.77
   2 ?    8.3   0.9    0.0026       2.7      12      37 ..      83     108 ..      74     115 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.19
  c-SKI_SMAD_bind 25 eakCikCleCkll 37
                       +C+ C+ C + 
       CTQ29156.1 57 AERCVACNLCAVA 69
                     678*******875 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0026
  c-SKI_SMAD_bind  12 ckGlfvpelyssseakCikCleCkll 37 
                       +G  +pe++  + ++Ci C  C+  
       CTQ29156.1  83 VDGRWYPEFFRINFSRCIFCGLCEEA 108
                      68999******************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1545.88
//
Query:       CTQ29157.1  [L=325]
Description: NADH dehydrogenase I chain H [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-120  402.3  18.6   1.5e-120  402.1  18.6    1.0  1  NADHdh    NADH dehydrogenase


Domain annotation for each model (and alignments):
>> NADHdh  NADH dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  402.1  18.6  8.2e-125  1.5e-120       2     299 .]      17     317 ..      16     317 .. 0.99

  Alignments for each domain:
  == domain 1  score: 402.1 bits;  conditional E-value: 8.2e-125
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-SSTTTTTTHHHHHHHHHCCS-----TTS-HHHHHHHHHHHHHHHHCTTTTS-SSS..SSS--TTH CS
      NADHdh   2 klllllvvlllvvalltlleRkvlAriqdRlGPnrvGplGllqplaDalKlllKediipkkadkllfllapvlalilallafaviPfge..vladlnvg 98 
                 k++++l+v++++ a++ + eR++l+ +q+R+GPnrvG+ G lq++aD++K+++Ked+ip+ +d+++f+lapv+a+++ llafa++P+++  v+adln+g
  CTQ29157.1  17 KAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWIPRFSDRVIFTLAPVIAFTSLLLAFAIVPVSPtwVVADLNIG 115
                 67889999999999**************************************************************************889******** PP

                 HHHHHHHHHHCHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-HHHHHHCCCTT-CCCCHHHHHHHHHHHHHHCCTCTTBTT CS
      NADHdh  99 lllilalsslgvygillaGwasnskYallGalRsaaqmisyEvalglsllavvllagslslseiveaqeeiwfillqllafiifliallaetnraPFDl 197
                 +l++l+++ l+vy++l+aGw+sn+kY+llGa+R++aq++syEv+lglsl++vv  ags+++++iv++q++ w+++ q+++f++f ia +a ++r+PFD 
  CTQ29157.1 116 ILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSFNMTDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQ 214
                 *************************************************************************9999********************** PP

                 TTSTTSSSSCCCTT-HCHHHHHHHHHHHHHHHHHHHHHHHHCT.SS-HCCS.HHHHHHHHHHHHHHHHHHHHHC----TCHHHHHHHCCTCHHHHHHHH CS
      NADHdh 198 peaesELvaGfhtEYsgmkfalfflaeyanmvlvsalavllFlgGwllpfs.gllwfllKvllllflfiwiratlpRlRydqlmklgwkvllplalanl 295
                 peae+EL+ G+h+EYsgmkf+lff++ey+ +v+vsal+v+lF+gGw++p+  +++wf+lK+++++++fi+ira+lpR Rydq+m++gwkv+lpl+l+nl
  CTQ29157.1 215 PEAEQELADGYHIEYSGMKFGLFFVGEYIGIVTVSALIVTLFFGGWNGPWLpPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLVNL 313
                 **************************************************99*********************************************** PP

                 HHHH CS
      NADHdh 296 llta 299
                 l+ta
  CTQ29157.1 314 LVTA 317
                 *985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2322.77
//
Query:       CTQ29158.1  [L=908]
Description: NADH:ubiquinone oxidoreductase, chain G [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-15   54.7   0.2    1.2e-14   53.6   0.2    1.7  1  NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur
    2.8e-12   46.5   0.2    2.4e-11   43.5   0.1    2.7  2  Fer2_4           2Fe-2S iron-sulfur cluster binding domain
    3.5e-11   42.9   0.1    9.9e-11   41.5   0.1    1.9  1  Molybdop_Fe4S4   Molybdopterin oxidoreductase Fe4S4 domain
    6.6e-11   41.8   0.0    1.2e-08   34.4   0.0    2.2  2  Molybdopterin    Molybdopterin oxidoreductase
    3.1e-09   36.7   1.5    5.6e-09   35.8   0.2    2.1  2  Fer2             2Fe-2S iron-sulfur cluster binding domain
    3.7e-06   26.9   0.0    1.2e-05   25.2   0.0    1.8  2  Molydop_binding  Molydopterin dinucleotide binding domain
  ------ inclusion threshold ------
       0.03   14.1   4.9      0.092   12.5   2.5    2.6  2  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai
        2.8    8.2   9.5       0.25   11.5   0.6    3.3  3  Fer4_6           4Fe-4S binding domain
        7.6    6.5   9.6        1.5    8.8   0.5    2.9  3  Fer4             4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> NADH-G_4Fe-4S_3  NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.2   5.8e-18   1.2e-14       1      37 [.      88     124 ..      88     127 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 5.8e-18
  NADH-G_4Fe-4S_3   1 RktilellLanHpldCltCdknGnCeLQdlayelgve 37 
                      R  ++e+l++nHp+dC++C+ +GnC+LQd++ + g++
       CTQ29158.1  88 RESVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHS 124
                      889****************************999975 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.1   1.2e-14   2.4e-11       5      78 ..       3      78 ..       1      82 [. 0.88
   2 ?   -1.5   0.0       1.3   2.6e+03       7      28 ..     658     679 ..     654     704 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 1.2e-14
      Fer2_4  5 tltfDGkevtvpeGdtvasAllangvdvprsckygrprgelcaggeCrnClVeve.....gepn.vracstpvedGlkve 78
                t+++DGke++v   d +++A+l  g d+p  c++      l+++g+Cr+C V+       ++++ v +c+tp+ dG  ++
  CTQ29158.1  3 TIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWH----PALGSVGACRQCAVKQYqnaedTRGRlVMSCMTPASDGTFIS 78
                99********************************....99*************9655555455527**********7665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
      Fer2_4   7 tfDGkevtvpeGdtvasAllan 28 
                 t+++++v   + d v++A++a+
  CTQ29158.1 658 TVNNRQVDWTQLDHVIDAAIAA 679
                 899999*99999******9987 PP

>> Molybdop_Fe4S4  Molybdopterin oxidoreductase Fe4S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.1     5e-14   9.9e-11       1      54 [.     221     274 ..     221     275 .. 0.97

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 5e-14
                     SEEEEEE-SSBTT--EEEEEEETTEEEEEEE-TTSTTTTT---HHHHTCHHCCC CS
  Molybdop_Fe4S4   1 ekvvktaCpyCgvgCglevhvkdgkivkvegdpdhpvnegrlCvKGrtllervy 54 
                     +++++++C+ C+ gC++   +++g+ +++e   ++ vn+  lC +Gr+++ +v+
      CTQ29158.1 221 MQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNRYFLCDRGRFGYGYVN 274
                     67899***********************************************98 PP

>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0046       9.2      54     152 ..     320     411 ..     283     435 .. 0.65
   2 !   34.4   0.0   6.1e-12   1.2e-08     332     417 ..     554     638 ..     503     643 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0046
                    CSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTHHHHCHHCCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHHHHHHHHHHHTTC-EEEEECS CS
  Molybdopterin  54 msmeslaslkkllsllggknlsfydwyadlppasaqqtigsdsrsnyessnpledlensdliilwGsNvreerpilnarirkaalkkkakvivigp 149
                     s es ++l++l+ +      +fy+  a+ + a  q  +   +r+  + + +l d+e  d++++ G ++ ++   +   +r+ a k+ka+ ++  +
     CTQ29158.1 320 ASIESNFALRELVGAD-----NFYTGIAKGEQARLQ-MMLKVLREGGIHTPSLRDIESYDAVLVLGEDITQTGARVALAVRQ-AVKGKAREMAAAQ 408
                    4556666555444333.....344444444444443.34455677788888899******************9999444444.5555544444444 PP

                    SB- CS
  Molybdopterin 150 rya 152
                    ++a
     CTQ29158.1 409 KVA 411
                    444 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 6.1e-12
                    HHHHTTSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEESCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEEEEESSS-ST CS
  Molybdopterin 332 nllkssgkkvlyllgnnpevdhadenevekalekldlvvvldgrltstalyaDiiLPaatwyEkedlytndegrfqhlkqavsppg 417
                    + l+s+  +++ +l  n+ ++ha + +v  al k+ lv+v+d + t    +a+++L aa++ E +++++n egr q++ q+ +p++
     CTQ29158.1 554 DELESGAADAVIVLE-NDLHRHASAARVDAALAKAPLVMVVDHQRTAIMDKAHLVLSAASFAESDGTVVNNEGRAQRFFQVYDPAY 638
                    567778888998888.******************************************************************9985 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.2   2.8e-12   5.6e-09       1      77 [.       4      71 ..       4      72 .. 0.79
   2 ?   -2.3   0.1       2.3   4.6e+03      25      41 ..      97     113 ..      82     114 .. 0.69

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 2.8e-12
                EETTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSS......SSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGGGSEE CS
        Fer2  1 itidgkevevevadgettlldaaeenggidipysCgg......ggCgtClvevlegevqsdetelegeeldegklrlaCqtiv 77
                i++dgke+ev+    ++ ll+a+ +  g+dipy+C +      g+C+ C+v+    ++        ++   +g l+++C+t++
  CTQ29158.1  4 IHVDGKEYEVNG--ADN-LLEACLSL-GLDIPYFCWHpalgsvGACRQCAVK----QY-----QNAED--TRGRLVMSCMTPA 71
                689999666654..555.*******9.**************9999******9....22.....22222..346689****987 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.3
                 HTTTTTSTTSSSSSS.SS CS
        Fer2  25 enggidipysCgggg.Cg 41 
                 +n+  d p  C++gg C 
  CTQ29158.1  97 TNHPHDCP-VCEEGGnCH 113
                 45577777.799999995 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       6.4   1.3e+04       5      22 ..     648     665 ..     645     669 .. 0.79
   2 !   25.2   0.0   6.3e-09   1.2e-05      19      98 ..     828     900 ..     822     907 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6.4
                      EE-BTTBSTTTTTCGCCH CS
  Molydop_binding   5 tgrsldqlhsqtrtrpvl 22 
                      + r l++lhs++++r+v 
       CTQ29158.1 648 SWRWLHSLHSTVNNRQVD 665
                      67778999****999875 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 6.3e-09
                      GCCHHHHCSSS-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC.....S-GHCTS--SC CS
  Molydop_binding  19 rpvlrlakpepevveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwweagekggnaNaltddat 98 
                       pv + ++pep ++ +np+dAa+lG++ G +   + +  +++++ +++e++  G+v +p+g +        a +lt +++
       CTQ29158.1 828 APVFQSRMPEP-YIKLNPADAAKLGVNPGAMLSFSVEGQTLRLPLVISEGLTAGQVGLPMGMPG------IAPVLTGSRI 900
                      56778899999.********************9988888**********************998......4444444444 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.17   3.4e+02      69      95 ..     363     386 ..     299     408 .. 0.75
   2 ?   12.5   2.5   4.6e-05     0.092       2     116 ..     484     600 ..     483     613 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.17
                   HHHHHHHHH-SEEEEES-SSSTCCCTT CS
  TPP_enzyme_M  69 kaanealeeaDlvlalGarfddirttg 95 
                   ++  + +e+ D vl+lG +    ++tg
    CTQ29158.1 363 TPSLRDIESYDAVLVLGEDI---TQTG 386
                   44555569999999999554...4444 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.6e-05
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHH...T-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH..-SEEEEES-SSSTCCC CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaekl...giPvvttlmgkgvipedhplylgmlglhgskaanealee..aDlvlalGarfddirt 93 
                   + ++++l+ ak+p+i+ G  + + +  ++++++a++l   g+ v  t+ ++ v +      lgm+g  + ++a + le+  aD v++l  +++ + +
    CTQ29158.1 484 DVIVQALAGAKKPLIISGTNAGSMEIIQAAANVAKALkgrGADVGVTMVARAVNS----VGLGMIGGGSLEEALDELESgaADAVIVLENDLHRHAS 576
                   5689*****************9999888888888777222577777777777665....67888888888888888876779****99999988777 PP

                   TTTTTTTTTT-.EEEEEESSCCCC CS
  TPP_enzyme_M  94 tgsepefapea.kiihididpaei 116
                   +++ ++   +a  ++ +d +++ i
    CTQ29158.1 577 AARVDAALAKApLVMVVDHQRTAI 600
                   776664444443566667777665 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   0.00013      0.25       2      17 ..     144     159 ..     143     160 .. 0.86
   2 ?    0.8   0.1       0.3     6e+02      16      23 ..     198     205 ..     198     206 .. 0.84
   3 ?   -1.0   0.6       1.1   2.2e+03       4      13 ..     223     232 ..     221     236 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
      Fer4_6   2 veidpdkCigCgdCvr 17 
                 + +  ++Ci C++Cvr
  CTQ29158.1 144 ISHEMNRCIACYRCVR 159
                 567789********97 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.3
      Fer4_6  16 vrvCPega 23 
                 v vCP+g+
  CTQ29158.1 198 VEVCPTGV 205
                 68****98 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.1
      Fer4_6   4 idpdkCigCg 13 
                 + p+ C +C 
  CTQ29158.1 223 FAPSICQQCS 232
                 67999*9996 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   0.6         9   1.8e+04      11      15 ..      45      49 ..      44      49 .. 0.77
   2 ?    8.8   0.5   0.00074       1.5       5      16 ..     148     159 ..     144     160 .. 0.85
   3 ?    3.7   0.1      0.03        60      15      23 ..     198     206 ..     198     207 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 9
                -THHH CS
        Fer4 11 CGaCv 15
                C +C+
  CTQ29158.1 45 CRQCA 49
                99996 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00074
                 TTTSSS-THHHH CS
        Fer4   5 eekCigCGaCve 16 
                 +++Ci+C +Cv 
  CTQ29158.1 148 MNRCIACYRCVR 159
                 689*******96 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.03
                 HHHSTTTEE CS
        Fer4  15 vevCPvgAI 23 
                 vevCP+g+ 
  CTQ29158.1 198 VEVCPTGVF 206
                 89****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (908 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 6597.82
//
Query:       CTQ29159.1  [L=445]
Description: NADH dehydrogenase I chain F [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-50  171.5   0.0    1.5e-50  171.0   0.0    1.2  1  Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subu
    1.5e-26   92.2   0.0    2.8e-26   91.4   0.0    1.4  1  NADH_4Fe-4S   NADH-ubiquinone oxidoreductase-F iron-sulfur bi
    2.5e-07   30.4   0.1    5.8e-07   29.3   0.1    1.6  1  SLBB          SLBB domain


Domain annotation for each model (and alignments):
>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.0   0.0   2.5e-54   1.5e-50       1     151 [.      54     226 ..      54     227 .. 0.98

  Alignments for each domain:
  == domain 1  score: 171.0 bits;  conditional E-value: 2.5e-54
  Complex1_51K   1 vkeagivGrGGagfPthvKlkakakkkk...kylivNaaEcEPgltkDrllmreepheileGlkiaaealgaekgvigvrdekpeaiealekalaea 94 
                   vk+ag+ GrGGagf t++K++ ++k+++   +yl++Na+E+EPg++kDrllm++ ph ++eG+ i a al+a +g+i++r+e+ ea+++l++a+aea
    CTQ29159.1  54 VKDAGLKGRGGAGFSTGLKWSLMPKDESmniRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQHLRRAIAEA 150
                   89**********************98879******************************************************************** PP

  Complex1_51K  95 kaagl...........ldievvklagkYpaGeekaLiesltgr.evprgkpp..advgv.....vvnNveTlaavy 151
                   ++agl           +++ v+++ag+Y++Gee+aLi+sl+gr + pr kpp  a +gv     +vnNveTl++v+
    CTQ29159.1 151 TEAGLlgknilgtgfdFELFVHTGAGRYICGEETALINSLEGRrANPRSKPPfpASSGVwgkptCVNNVETLCNVP 226
                   *******************************************9999***999999999****************8 PP

>> NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   4.7e-30   2.8e-26       3      84 ..     339     421 ..     337     422 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 4.7e-30
                  HHHHHHHHHHH--S--HHHHIIIIHHHHHHHHHTBT---HHHHHHHHHHHHHHS.S--SSTHHHHHHHHHHHHHHHHHHHHHH CS
  NADH_4Fe-4S   3 arrllefyaaesCGkCtpCreGtkrllelleriaagegteedldlleelaetik.gtslCalgdsaanpvlsalrkFreefea 84 
                  +r+l ef+a+esCG+CtpCr G+++ +++l+ +++geg++ d+++le+l++ +  g+++Ca++++a++p++sa+++Freefea
   CTQ29159.1 339 VRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGpGKTFCAHAPGAVEPLQSAIKYFREEFEA 421
                  78999************************************************989*************************97 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   9.7e-11   5.8e-07       5      53 ..     253     295 ..     253     300 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 9.7e-11
                 ESSBSS-EEEEEETT-BHHHHHHTTT-SBSS.........-E.EEE-SSS CS
        SLBB   5 tGeVkrPgnyevpigttlsdlieqaGGltddadlksvnLarl.avipgGp 53 
                 +G Vk+Pg++e+p gtt ++++e++ G+++d+        ++ a  pgG+
  CTQ29159.1 253 SGRVKNPGVWELPFGTTAREILEDYAGGMRDGL-------KFkAWQPGGA 295
                 7******************************99.......7777778876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3727.78
//
Query:       CTQ29160.1  [L=166]
Description: NADH:ubiquinone oxidoreductase, chain E [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-50  170.0   0.0    3.2e-50  169.8   0.0    1.0  1  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin


Domain annotation for each model (and alignments):
>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   0.0   1.8e-54   3.2e-50       3     145 .]      24     166 .]      22     166 .] 0.98

  Alignments for each domain:
  == domain 1  score: 169.8 bits;  conditional E-value: 1.8e-54
                      HHHTTS--GGGGHHHHHHHHHHHHSS--HHHHHHHHHHHTS-HHHHHHHHTTSSSS-SS---SEEEEEE-SHHHHTTTHHHHHHHHHHHHT--T CS
  2Fe-2S_thioredx   3 eiiakypekrsaliplLklvQeeegwlpeealeevaellgvppaevyevatFYsmfnlkpvgkyviqvCtttpCalrgseeilealekklgika 96 
                      +  ++y++ r+a i++Lk+vQ+++gw+p+ a+ ++a++lg+p+++v++vatFYs++ ++pvg++vi+ C++++C+++g + i +a+ekkl+ik+
       CTQ29160.1  24 HEKHHYEDPRAASIEALKIVQKQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHITGYQGIQAAIEKKLNIKP 117
                      5678999*************************************************************************************** PP

                      T-B-TTSSEEEEEES--S-GGGSSEEEESSSSEEES-HHHHHHHHHHHH CS
  2Fe-2S_thioredx  97 gettadgkftleeveClGaCanaPvvqindevyedltpekveeileklk 145
                      g+tt dg+ftl  ++ClG+C+++P+++i+++++++ltpe + ++le++k
       CTQ29160.1 118 GQTTFDGRFTLLPTCCLGNCDKGPTMMIDEDTHSHLTPEAIPDLLEQYK 166
                      **********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1272.07
//
Query:       CTQ29161.1  [L=602]
Description: NADH dehydrogenase I chain C,D [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-102  342.7   0.0   1.5e-102  342.3   0.0    1.1  1  Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd s
    7.9e-41  139.5   0.1    1.9e-40  138.3   0.1    1.7  1  Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd s


Domain annotation for each model (and alignments):
>> Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.3   0.0  1.7e-106  1.5e-102       1     271 []     331     602 .]     331     602 .] 0.99

  Alignments for each domain:
  == domain 1  score: 342.3 bits;  conditional E-value: 1.7e-106
                     HTT-HHHHHHHHHHHHHHHHHHHHHHSSSSS-TTBESSBBSS---TTHHHHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHSSSS-BSHHHHHHHT CS
  Complex1_49kDa   1 DlGaltvflyafreRekildlleevtGaRltasyiriGGvarDlpegllekikeflkelekkldeleklltknrifkkRtkgvgvlskeealelg 95 
                     D+Ga+t++++af++R+ki+dl+e++tG R++++++riGGva+Dlp+g+ + ++efl++++k+ld++ek   +n+i+k R +gv++++++eale+g
      CTQ29161.1 331 DVGAMTPVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPKRLDSYEKAALRNTILKGRSVGVAAYTAKEALEWG 425
                     9********************************************************************************************** PP

                     T-SSSSGGGT-TTTHHHHSS-SSGGGS-------SS.BSHHHHHHHHHHHHHHHHHHHHHHHHT--.S-SB---TTTS---GGGGGT-HHHHHHH CS
  Complex1_49kDa  96 ltGpvlRasGvkyDlRkaepYeaYdeldfdvpvgee.gDvydRylvrveEmrqSlkIieqaleklpegpvlaedkkvalpkkeevkksmealihh 189
                     +tG+ lRa+G+++D+Rk +pY++Y+++df+vp+g   +D+y R++++veE+rqSl+I++q+l+++pegp++a+++ +++p+ke++ +++e+li+h
      CTQ29161.1 426 TTGAGLRATGIDFDVRKWRPYSGYENFDFEVPTGGGvSDCYTRVMLKVEELRQSLRILQQCLDNMPEGPFKADHPLTTPPPKERTLQHIETLITH 520
                     *********************************7766********************************************************** PP

                     HHHHHS-----SEEEEEEEEETTEEEEEEEEEESSSS-SEEEEE-HHHHTTTTHHHHTTTS-SGGGTHHHHTT---HHHHH- CS
  Complex1_49kDa 190 fklvtegfkvpkgevyaavEapkGelgvylvsdgsskpyrlkirapsfvnlqaleellkgellaDvvailgsldivlgevDR 271
                     f +v++g  +p++e ++++Ea+kG   +yl+sdgs+++yr+++r+psf++lq++++ ++g+l++D++++lgs+d+v+++vDR
      CTQ29161.1 521 FLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR 602
                     *********************************************************************************9 PP

>> Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.1   2.1e-44   1.9e-40       1     120 [.      52     179 ..      52     181 .. 0.95

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 2.1e-44
                     EE--HHHHHHHHHHHHH...TT--EEEEEEEEETT.........SSSEEEEEEEE--S-.-EEEEEE....-S-BEE--TTT-STHHHHHHHHHH CS
  Complex1_30kDa   1 lvvepedllevakflkdeeelgfdvlsdltavDek.........eerfevvyhllsleknerirvkvevdeeepevpSvtdlfpgadwyEREayD 86 
                     ++v++e+llev  flk+ ++  + +l dl+++De+          ++f+v+yhl s+++n+ i++kv+++e++ ++p+ t+lfp+a+wyERE+++
      CTQ29161.1  52 VWVKREQLLEVGDFLKKLPK-PYVMLFDLHGMDERlrthrdglpAADFSVFYHLISIDRNRDIMLKVALSENDLHLPTFTKLFPNANWYERETWE 145
                     689*************9665.69**********888888999999************************99************************ PP

                     HSHHBCTTSSTSS-SSSSTTSSS-TTSTTS---- CS
  Complex1_30kDa  87 mfGivfeghpdlrrillpedfeghPLRkdfplsg 120
                     mfGi+f+ghp+lrri++p ++eghPLRkd+p+++
      CTQ29161.1 146 MFGITFDGHPNLRRIMMPPTWEGHPLRKDYPARA 179
                     *******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4645.02
//
Query:       CTQ29162.1  [L=224]
Description: NADH dehydrogenase I chain B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-22   79.0   0.2    3.9e-22   78.5   0.2    1.2  1  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.2   2.2e-26   3.9e-22       4     129 ..      68     174 ..      66     176 .. 0.82

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 2.2e-26
                  HHHHHT-TTTTHHHHHHTEEEEEETTT-.S--HHHHHHTHTTTSEEEEEESBE...EEEHHHHHHHHGGGSSEEEEESHHHHH-TGGGSTT-TEE-HH CS
  Oxidored_q6   4 csisllaleedlldllelielryhetll.adskeeeieakekeadvlvveGavtrkpkealellkelaekakaviavGtCAafGGipaaannpsvgee 100
                  c +++ ++ + + d+      r++ ++l a++         ++ad++vv G++ +k+++ +++l++++ ++k+vi++G+CA +GG++  ++    +  
   CTQ29162.1  68 CYVEMVTSFTAVHDV-----ARFGAEVLrASP---------RQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYS----V-- 145
                  666666666666666.....445443330344.........49********************************************5555....5.. PP

                  HHHHHC.S-E.EEE-SSS--HHHHHHHHH CS
  Oxidored_q6 101 vgellevvpvdinipGCPphpeailetll 129
                  v+++++ +pvd++ipGCPp+pea +++l+
   CTQ29162.1 146 VQGVDKFIPVDVYIPGCPPRPEAYMQALM 174
                  57************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1802.56
//
Query:       CTQ29163.1  [L=146]
Description: NADH:ubiquinone oxidoreductase, membrane subunit A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-31  107.9   0.5    2.3e-31  107.9   0.5    1.5  2  Oxidored_q4      NADH-ubiquinone/plastoquinone oxidoreductase
  ------ inclusion threshold ------
      0.027   14.5   8.3       0.48   10.5   0.0    2.1  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
      0.094   11.2   1.8       0.15   10.5   1.8    1.3  1  K_trans          K+ potassium transporter


Domain annotation for each model (and alignments):
>> Oxidored_q4  NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.42   2.5e+03      74      83 ..      11      20 ..       2      30 .. 0.54
   2 !  107.9   0.5   3.9e-35   2.3e-31       2      99 .]      26     123 ..      25     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.42
                 HHHHHHHHHH CS
  Oxidored_q4 74 liemllFlli 83
                  +++++Fl+i
   CTQ29163.1 11 HWAFAIFLII 20
                 3444444443 PP

  == domain 2  score: 107.9 bits;  conditional E-value: 3.9e-35
                  HHHHHHHCHSS-----HHHHS-SSSS--SS---.--HHCHHHHHHHHHHHHHHHHHHHHHHHHSST..HHHHHHHHHHHHHHHHHHHHHHHHH-S-XX CS
  Oxidored_q4   2 llllllsallgpkkpnkeklspYEcGfepvgearlrfsvkfylvallFliFDvevvflfpwavslkelglfgliemllFllillvglvYewkkgaLeW 99 
                  +l+l+  ++lg + + ++k++p+E+G+++vg+arlr+s+kfylva++F+iFDve+++l++w++s++e+g++g++e+++F+l+ll+glvY ++ gaL+W
   CTQ29163.1  26 CLMLVGGWYLGGRARARSKNTPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLYAWSTSIRESGWVGFVEAAIFILVLLAGLVYLVRIGALDW 123
                  57888899999999999********************************************************************************* PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     8e-05      0.48      65     106 ..      13      56 ..       5      63 .. 0.61
   2 ?    4.9   5.8    0.0044        26      39     103 ..      66     130 ..      56     134 .. 0.44

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8e-05
  Phage_holin_3_6  65 lwlaaliv..aavllvlagvlalvglkklkkakplpertieelk 106
                      + + +li+  ++ +l l g   l g+++++++++++e+ i+++ 
       CTQ29163.1  13 AFAIFLIIaiGLCCLMLVGGWYLGGRARARSKNTPFESGIDSVG 56 
                      23335554224555555555666666677777788999998875 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0044
  Phage_holin_3_6  39 llgaagvlallalllllvala.lalaa....lwlaalivaavllvla.gvlalvglkklkkakplpertie 103
                      + ++a++++++ + +l + ++           w++++  a++ lvl  g++ lv + +l     +p+r+++
       CTQ29163.1  66 FYLVAMFFVIFDVEALYLYAWsT---SiresGWVGFVEAAIFILVLLaGLVYLVRIGALDW---TPARSRR 130
                      44444444444444444444222...13555777776654333333303333332222322...4555555 PP

>> K_trans  K+ potassium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.8   2.6e-05      0.15     381     427 ..      64     109 ..      54     114 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.6e-05
     K_trans 381 lklilvllvlllfllidllflsanlkKipeGgwvplllavvllliml 427
                  k++lv++++++f  ++ l+l a  + i e gwv ++ a++++l++l
  CTQ29163.1  64 AKFYLVAMFFVIF-DVEALYLYAWSTSIRESGWVGFVEAAIFILVLL 109
                 5556666555555.899*************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1192.79
//
Query:       CTQ29164.1  [L=69]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       173  (0.00964917); expected 358.6 (0.02)
Passed bias filter:                      162  (0.00903564); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 623.35
//
Query:       CTQ29165.1  [L=308]
Description: DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-28   97.3   0.3    1.3e-27   96.5   0.3    1.4  1  LysR_substrate  LysR substrate binding domain
    4.8e-18   64.9   1.7    8.6e-18   64.0   1.7    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.3   1.5e-31   1.3e-27       3     204 ..      96     284 ..      94     288 .. 0.92

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 1.5e-31
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvs 97 
                     +l+g L+iga++ +a ++lp ll r    yP+ +le+++ + +++ ++laeg +Dla+++ +  ++g+++  L + p ++++++++ La+ge++ 
      CTQ29165.1  96 SLQGALSIGASEETADTILPFLLNRIGCFYPRMTLEIKVHPHAAIMEMLAEGLVDLALTTHQ--PPGFTSFTLRTSPTLWYCAAEYVLAKGESI- 187
                     689********************************************************765..68888*************************. PP

                     GGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCC CS
  LysR_substrate  98 ledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgre 192
                            plillee+s++r+ + +al+ a+++++ ++ ++sl+ ++a+v+aGlG++  p  +++++l+  +++   lp+  +  ++++ ++++  
      CTQ29165.1 188 -------PLILLEEPSPFRQDIIAALETARVSWHLSHGASSLSGVKAAVKAGLGVTARPVEMMSPDLRVAGIS-EGLPA-LPDTRYVVSCNPRT- 272
                     .......**************************************************************9999.99999.66688877777776. PP

                     CHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidfl 204
                      s++ +a  + l
      CTQ29165.1 273 VSELPQAIFQSL 284
                     777666666655 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   1.7   9.6e-22   8.6e-18       1      59 [.      13      71 ..      13      72 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 9.6e-22
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l++lr+fvava+  +f++AA ++  +q+avs+q++rLE+++g +Lf R+gr+  LTe+G
  CTQ29165.1 13 LDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLEQLVGKELFARHGRNKLLTEQG 71
                689******************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2475.47
//
Query:       CTQ29166.1  [L=405]
Description: putative aminotransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-47  160.0   0.0    9.8e-47  159.9   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    3.6e-06   26.5   0.0    5.5e-06   25.9   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    0.00059   18.9   0.0    0.00097   18.2   0.0    1.3  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.016   14.5   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
       0.02   13.7   0.0      0.029   13.2   0.0    1.2  1  Aminotran_MocR   Alanine-glyoxylate amino-transferase
      0.065   11.7   0.0      0.098   11.2   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.9   0.0   3.3e-50   9.8e-47       3     362 ..      35     394 ..      33     395 .. 0.88

  Alignments for each domain:
  == domain 1  score: 159.9 bits;  conditional E-value: 3.3e-50
                    EEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEE CS
  Aminotran_1_2   3 vinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilv 98 
                    v++L+++++    g + ++e++      +   +t+  y +++gl+++++a+++ ++ +   +++ e  +  g+G ++li+ ++++l ln gde lv
     CTQ29166.1  35 VLKLNIGNPAPF-GFEAPDEILVDV---IRNLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVE-DIYIGNGVSELIVQAMQAL-LNSGDEMLV 124
                    666777776666.444555555544...4488999*********************7777788888.*******************.********* PP

                    EESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCB CS
  Aminotran_1_2  99 pdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfv 194
                    p+p y+  + ++ ls g+ v y ++++ d+  dl+++ ++++       +t++i++ +p+NPtG+v+++e l++++++a+++nl++f De+Y +  
     CTQ29166.1 125 PAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITP------RTRGIVIINPNNPTGAVYSKELLQEIVEIARQHNLIIFADEIYDKIL 214
                    ******************************************9......*********************************************** PP

                    SSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH......HHHHHHHHHHH.HHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 195 fgsldavatranveeepnllivgslsKafGlaGeRvGyilgna......avvsqlrklsr.pflsssllqaavaaalsdallkqseleemrqrlqk 283
                    +++ ++ + +a ++++  +++ ++lsK + +aG+R G+ + n        +++ l+ l++ +++   ++q+a+ +al   + + se+     rl +
     CTQ29166.1 215 YDEAQHHS-IAALAPDLLTVTFNGLSKTYRVAGFRQGWMVLNGpkkhakGYIEGLEMLASmRLCANVPAQHAIQTALGGYQSI-SEFIIPGGRLYE 308
                    **877766.999999999***********************9889*999888888877661455599**************87.588888899999 PP

                    HHHHHHHHHHHS.TEEEECCSCSSEEEEEETHH......CHHHHHHHHHHTCTEEEEEGGGGTS..TTEEEEECTTS-HHHHHHHHHH CS
  Aminotran_1_2 284 rrkelrdeLael.glkvlasqsgmflltdlsae......takelskkLleevgvyvtpgtsftv..pgrlRitvAglteeeleelvea 362
                    +r +  + ++++ g+++++++++++++  ++a+      ++k + + Ll+e +v++++gt f    p ++Ri      e++le ++++
     CTQ29166.1 309 QRNRAWELINDIpGVSCVKPKGALYMFPKIDAKrfnihdDQKMVLDFLLQE-KVLLVQGTAFNWpwPDHVRIVT-LPREDDLEMAISR 394
                    999999999999*********************887774444444449999.********************99.6677777777766 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.8e-09   5.5e-06      45     144 ..     101     207 ..      94     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.8e-09
                      SSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHH.HHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEEEEB-...GGGB--...-HHHHH CS
  DegT_DnrJ_EryC1  45 ssGtaAlhlaLralgvgpgdeVIvpsltFvatanav.lelgakpvfvDvdpdtynidpaaieaaitertkaIlpVh...lyGqva...dmdalk 131
                       +G + l +  +   ++ gde +vp+  +    +av l +g  + ++  +  ++ +d ++i+a+it+rt++I++++     G+v     ++++ 
       CTQ29166.1 101 GNGVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVsLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINpnnPTGAVYskeLLQEIV 194
                      566666666555555778***********865555504555544444446689********************997222467776443489*** PP

                      HHHHHCT-EEEEE CS
  DegT_DnrJ_EryC1 132 aiaakhglkvieD 144
                      +ia++h+l+++ D
       CTQ29166.1 195 EIARQHNLIIFAD 207
                      **********988 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.3e-07   0.00097      76     175 ..     107     207 ..      76     210 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.3e-07
                  HHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEE.EBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB...--HHHHHHHHHHTT CS
  Aminotran_5  76 lvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvi.pldeegeldldelekllnektklvaithvsnvtGti...qpveeigklakkkg 169
                  l+++++++ l+ gde++v + ++   + +++ l+   g  v+++    +++  dld+++++++++t+ + i   +n tG +   + ++ei+++a++++
   CTQ29166.1 107 LIVQAMQALLNSGDEMLVPAPDYPLWT-AAVSLS--SGKAVHYLcDESSDWFPDLDDIRAKITPRTRGIVIINPNNPTGAVyskELLQEIVEIARQHN 201
                  455555444999999999999998777.666665..88899988677899*****************************973334699********** PP

                  -EEEEE CS
  Aminotran_5 170 alvlvD 175
                   ++++D
   CTQ29166.1 202 LIIFAD 207
                  ***999 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   5.3e-06     0.016     110     167 ..     157     207 ..     110     208 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.3e-06
                      -HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 110 dlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                      dl++++a+i++      +++ i++ + nn   G v+s e l+e+ +ia+++++ ++ D
       CTQ29166.1 157 DLDDIRAKITP------RTRGIVIINPNNP-TGAVYSKELLQEIVEIARQHNLIIFAD 207
                      67777777777......5788888899995.8********************988877 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.6e-06     0.029     126     232 ..     121     224 ..      93     232 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.6e-06
                     EEEEEES--HHHHH...HHHHHT-EEEEEEEETTEE-HHHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTS CS
  Aminotran_MocR 126 kllvtvpGydrhfl...lleelGielltvdlqddGpdvdaveklvaedasvkGilavpkysnptGetiseevarrlaalkaaapdfrifaddaya 217
                      +lv++p y    +   l   + ++ l+ +  d  pd+d ++  +   +  +Gi+ +    nptG ++s+e  ++++ +     ++ ifad+ y 
      CTQ29166.1 121 EMLVPAPDYPLWTAavsLSSGKAVHYLCDESSDWFPDLDDIRAKI--TPRTRGIVIIN-PNNPTGAVYSKELLQEIVEIA-RQHNLIIFADEIYD 211
                     688888888765441114455667777777777889*99998665..57889*98875.58****************985.56799********7 PP

                     S-BS.SSSS----HH CS
  Aminotran_MocR 218 vhdlvaeedkdaniv 232
                        l+ +e +++ i 
      CTQ29166.1 212 K-ILY-DEAQHHSIA 224
                     3.344.444444555 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.3e-05     0.098      82     174 ..     110     208 ..      97     216 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.3e-05
                      HHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHH...TTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----...HHHHHHHHHHTT-E CS
  Cys_Met_Meta_PP  82 aailallkaGdeivvsddlYggtqrllkkvlkk...lgievkfvdtsdleelekaikentklvylEtptnpllkvvD...iekiaklakkagvl 169
                      +a++all++Gde++v    Y    + ++    k      + +     dl++++++i+++t+ + +  p np+  v     +++i+++a++++++
       CTQ29166.1 110 QAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKavhYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNPTGAVYSkelLQEIVEIARQHNLI 203
                      6778899999999988877765444443333331103333333334789***********************99876455899**********9 PP

                      EEEEG CS
  Cys_Met_Meta_PP 170 vvvDn 174
                      ++ D 
       CTQ29166.1 204 IFADE 208
                      99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3200.50
//
Query:       CTQ29167.1  [L=199]
Description: deoxyribonucleoside 5'-monophosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-77  257.2   0.8    8.4e-77  257.0   0.8    1.0  1  HD_2      HD containing hydrolase-like enzyme
    2.8e-17   63.1   0.3    3.4e-17   62.9   0.3    1.1  1  HD_3      HD domain
    7.9e-09   35.8   0.3    1.1e-08   35.3   0.3    1.2  1  HD        HD domain
  ------ inclusion threshold ------
      0.043   13.3   0.0      0.057   12.9   0.0    1.3  1  HDOD      HDOD domain
      0.052   13.6   0.1      0.071   13.2   0.1    1.2  1  CAS_C     Crk-Associated Substrate C-terminal domain


Domain annotation for each model (and alignments):
>> HD_2  HD containing hydrolase-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.0   0.8   2.3e-80   8.4e-77       1     182 []       5     186 ..       5     186 .. 0.99

  Alignments for each domain:
  == domain 1  score: 257.0 bits;  conditional E-value: 2.3e-80
        HD_2   1 eFfallsrlkyieRwalmrntreenvaeHslevaliahalalienkkfggkldaerlallalyHDasEiitGDlptpvKyanpeireaykevEeeaeek 99 
                 +Ffa+lsrlk+i+Rw+lmrn+r+env+eHsl+va++ahala i+n+kfgg+++aer+alla+yHDasE++tGDlptpvKy+n++i+++yk++E++a++k
  CTQ29167.1   5 HFFAHLSRLKLINRWPLMRNVRTENVSEHSLQVAMVAHALAAIKNRKFGGQVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQK 103
                 8************************************************************************************************** PP

        HD_2 100 llelLpeelreeyeelladeeaeeeekklvkaaDklsalikcleelkagnkeFeeakkeieeklkelelpevdyFleeflpsl 182
                 l++++p+elr+ +e+l+ +++++eee+++vk+aD l+a++kcleel+agn+eF  ak ++e++l++ +  e+dyF++ f+ps+
  CTQ29167.1 104 LVDMVPDELRDIFEPLIDEHHYSEEEQSIVKQADALCAYLKCLEELSAGNNEFLLAKGRLEKTLASRRSAEMDYFMQVFVPSF 186
                 *****************999999**********************************************************97 PP

>> HD_3  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.3   9.5e-21   3.4e-17       2     142 ..      11     156 ..      10     178 .. 0.82

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 9.5e-21
        HD_3   2 ekLKfqkRqgwlqtgrvreesvaeHmwrvalmalllseelk....ekvdiarvikmfLiHDlvEiltgDiispd.....elakeekeeeekeaaerilk 91 
                  +LK + R  w    +vr e+v+eH++ va++a  l++  +     +v+ +r+  +++ HD  E+ltgD+++p+     ++a+e+k   ek a+++++ 
  CTQ29167.1  11 SRLKLINR--WPLMRNVRTENVSEHSLQVAMVAHALAAIKNrkfgGQVNAERIALLAMYHDASEVLTGDLPTPVkyfnsQIAQEYK-AIEKIAQQKLVD 106
                 69******..***999***************9988875444333399***************************655433333333.347889****** PP

        HD_3  92 llpeelaeellalweEFeeretkeakfakdlDklepllqalekegdslaaf 142
                 ++p+el++ ++ l++E + +e +e  ++k+ D+l + l  le+    +++f
  CTQ29167.1 107 MVPDELRDIFEPLIDEHHYSE-EEQSIVKQADALCAYLKCLEELSAGNNEF 156
                 ****************99865.566788********999999888888777 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.3   3.1e-12   1.1e-08       2     120 ..      31     140 ..      30     142 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 3.1e-12
                 HHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHTTTTHHHHTS..HHHHHH.CTCCHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHTTCCHH CS
          HD   2 leHsleVaklarrlaedlge....eedrellllaaLlHDiGkgpfgdafekkeee.fekflaHekvgaeilrevekrlgld...ledvaklirehhesw 92 
                  eHsl+Va +a  la   ++    + + e++ l a +HD  ++++gd  + ++ + f+++ a e  + e++ + ++++ ++    +++  li ehh s+
  CTQ29167.1  31 SEHSLQVAMVAHALAAIKNRkfggQVNAERIALLAMYHDASEVLTGD--LPTPVKyFNSQIAQEYKAIEKIAQQKLVDMVPdelRDIFEPLIDEHHYSE 127
                 69*************99999**************************9..33333369999999999999999999999999****************** PP

                 HHHHHHHHHHCCTSCHHHHHHHHHHHHH CS
          HD  93 egkkrprglaerqlslearivklaDrla 120
                 e               e+ ivk aD+l 
  CTQ29167.1 128 E---------------EQSIVKQADALC 140
                 9...............899999999986 PP

>> HDOD  HDOD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.6e-05     0.057      87     162 ..      22     101 ..       5     132 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
                 .-SS-HHHHHHHHHHHHHHHHHHHHHT.....T-S-HHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHH---HHHHHH CS
        HDOD  87 eegadlkklwehslavAlvarelaeel.....gledpeeaflaGLLhdiGklvllsllpeeleellekvaeeelslleaee 162
                 +++++ +++ ehsl+vA+va +la+       g+ ++e++ l ++ hd  +++    lp  ++ +++++a+e ++ +++ +
  CTQ29167.1  22 MRNVRTENVSEHSLQVAMVAHALAAIKnrkfgGQVNAERIALLAMYHDASEVLTG-DLPTPVKYFNSQIAQEYKAIEKIAQ 101
                 6789999*****************8876777556668***********9987655.5677777777777777766666555 PP

>> CAS_C  Crk-Associated Substrate C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1     2e-05     0.071      76     170 ..      51     145 ..      10     148 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-05
       CAS_C  76 ekksklsskdkqllafyseqcrlhfgaLtkAidaflsslsnnqpPkiFiahsKlvilsahkLVfigDtLcreaqekdvrnkvlessnaLcelLkt 170
                 +   +++++   lla+y +  +  +g L   ++ f+s + ++      ia+ Klv ++   L  i   L  e + ++ +++++++++aLc+ Lk 
  CTQ29167.1  51 KFGGQVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVDMVPDELRDIFEPLIDEHHYSEEEQSIVKQADALCAYLKC 145
                 33456666777899***************************9999999*********************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 1689.95
//
Query:       CTQ29168.1  [L=610]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-58  198.5  44.2    1.2e-37  129.7  11.7    2.1  2  CitMHS         Citrate transporter
    2.5e-25   88.1   0.8    1.2e-11   44.3   0.1    2.3  2  TrkA_C         TrkA-C domain
    4.9e-22   78.6  47.6      9e-12   44.8  17.2    3.6  3  Na_sulph_symp  Sodium:sulfate symporter transmembrane region
    2.3e-11   43.2  46.5      5e-09   35.5  19.4    2.8  2  DctM           Tripartite ATP-independent periplasmic transpo


Domain annotation for each model (and alignments):
>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.7  11.7   2.8e-41   1.2e-37       1     168 [.      16     197 ..      16     282 .. 0.92
   2 !   75.0  24.5   1.2e-24   5.6e-21       2     167 ..     430     607 ..     428     610 .] 0.87

  Alignments for each domain:
  == domain 1  score: 129.7 bits;  conditional E-value: 2.8e-41
                 xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
      CitMHS   1 lvllileklrldvvallvlvll....vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvllvlltallsafvsndgv 94 
                 +vl++++k+r+d++al+v+v++    +lt++ea+sg++ p ++l+++++iig +l +tG++  ++a+l+++ag++++ +l+ l+l++a l+af+s +gv
  CTQ29168.1  16 VVLFATGKVRMDAIALMVIVAFvlsgTLTLNEAFSGFSDPNVILIAALFIIGDGLVRTGVATKMGAWLVSVAGNSETkMLIYLMLTVAGLGAFMSSTGV 114
                 59************************************************************************************************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxx RF
      CitMHS  95 vlimipivlslakrlkklppllliplalaaniggaltpiGtpttraaarpglslpnlll.....................lalllvgllplvllf 168
                 v+i+ip+vls+ +r++ +p +l++pl++a  i g++t++ tp            pnl++                     l++l+ g+++++ + 
  CTQ29168.1 115 VAIFIPVVLSVSARMNTSPSRLMMPLSFAGLISGMMTLVATP------------PNLVVnsellreglhgfsffsvtpigLVVLILGIVYMLAMR 197
                 **************6655556*********************............**********************9877666777777776665 PP

  == domain 2  score: 75.0 bits;  conditional E-value: 1.2e-24
                 xxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxx RF
      CitMHS   2 vllileklrldvvallvlvll....vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvl.lvlltallsafvsndgv 94 
                 +l++++ ++ +++a+++ +l+     +  e+a+++i +p i+l++g+m ++ al++tG++d +++ l+ +agg    l++  l+++ a ++ f+sn+++
  CTQ29168.1 430 ALMLTDEIPNPIAAIIACLLMgkfrCINAESAYKAIHWPSIILIVGMMPFALALQKTGGVDLVVKGLMDVAGGEGPyLMLGcLFVMCAAIGLFISNTAT 528
                 7899999********999999****************************************************99888888999999************ PP

                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxxxxxxx RF
      CitMHS  95 vlimipivlslakrlkklppl.lliplalaaniggaltpiGtpttraaarpglslpnlll...................lalllvgllplvll 167
                 +++m+pi+l+ ak+ ++ +p+ +++++a+aa++   +tp+  p            +n l+                   + +++v++l + +l
  CTQ29168.1 529 AVLMAPIALAAAKS-MGVSPYpFAMVVAMAASAAF-MTPVSSP------------VNTLVlgpgkysfsdfvkigvpftILVMVVCVLLIPVL 607
                 *************8.6777777************9.*******............99888899999998888877666422233333333333 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   1.2e-14   5.5e-11       2      63 ..     231     297 ..     230     304 .. 0.91
   2 !   44.3   0.1   2.6e-15   1.2e-11       1      67 [.     326     394 ..     326     395 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 1.2e-14
                 EEEEEE--GGGTTSBHHHHTHHHH.S-EEEEE..E-T..-EEES--TT-B--TT-EEEEEEEHHHHH CS
      TrkA_C   2 vevtvpagsplvGktlkelnlrar.gvlvvai..rRg..geliipsgdtvLeeGDvllvvgspsdla 63 
                 +++++++gsp++G++l++l+lr+r  ++v+++   R+   ++++ +g  +++++Dvll+ +s sd++
  CTQ29168.1 231 RRLAIRPGSPMIGQRLDDLKLRERyCANVIGVerWRRfrRVIVNVNGVSEFRARDVLLIDMSASDVD 297
                 799*****************************75344577*************************98 PP

  == domain 2  score: 44.3 bits;  conditional E-value: 2.6e-15
                 CEEEEEE--GGGTTSBHHHHTHHHH.S-EEEEEE-T-EEES--T.T-B--TT-EEEEEEEHHHHHHHHH CS
      TrkA_C   1 lvevtvpagsplvGktlkelnlrar.gvlvvairRggeliipsg.dtvLeeGDvllvvgspsdlaelre 67 
                 ++ev++ ++s + Gkt++e+ +r+r g ++v+ +R+g+ +  s  d  L+ GD+llvvg+  ++a l++
  CTQ29168.1 326 MAEVALIPDSEMMGKTVREIAFRTRfGLNIVGMKRDGKAMDGSVvDEPLQLGDILLVVGNWRQIALLAK 394
                 689*********************************888888888*******************99876 PP

>> Na_sulph_symp  Sodium:sulfate symporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   8.2   6.5e-09   2.9e-05      34     129 ..       9     101 ..       4     106 .. 0.88
   2 !   22.6   9.1   1.1e-08   4.9e-05     363     458 ..      93     193 ..      90     200 .. 0.77
   3 !   44.8  17.2     2e-15     9e-12     293     462 ..     439     604 ..     416     608 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 6.5e-09
  Na_sulph_symp  34 laifiaaivglileplplavialialsllavligvlaakalsevlsgfssdttlLvfaalliaaavektgLgkRiAlvlvkivGkrt.liLgyalv 128
                    l  +++a+v + +  + + +ial+ +  + vl+g+l+   l+e+ sgfs+  ++L++a ++i+ +++ tg   ++   lv++ G++   +L y ++
     CTQ29168.1   9 LSLLAIAVVLFATGKVRMDAIALMVIVAF-VLSGTLT---LNEAFSGFSDPNVILIAALFIIGDGLVRTGVATKMGAWLVSVAGNSEtKMLIYLML 100
                    556778889999999*********99999.9999999...9*******************************************986366666655 PP

  Na_sulph_symp 129 l 129
                    +
     CTQ29168.1 101 T 101
                    5 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 1.1e-08
  Na_sulph_symp 363 aiiiilslfvlvhylfaSatAttaallpillavaqaipgappllvalllalatslagfllpyatgpnpivf......gagylkvkdywrlGfilsi 452
                     ++i l+l v+    f S t  +a+++p++l+v+  +    p  ++++l +a  + g+++ +at+pn +v       g + ++  +   +G+++ i
     CTQ29168.1  93 KMLIYLMLTVAGLGAFMSSTGVVAIFIPVVLSVSARM-NTSPSRLMMPLSFAGLISGMMTLVATPPNLVVNsellreGLHGFSFFSVTPIGLVVLI 187
                    57788899999999***********************.777999*************************962222223444444455555666655 PP

  Na_sulph_symp 453 igllil 458
                    +g++ +
     CTQ29168.1 188 LGIVYM 193
                    555554 PP

  == domain 3  score: 44.8 bits;  conditional E-value: 2e-15
  Na_sulph_symp 293 attvaivvlvillllrvldWkDivkqktaWntllllgglialakllersgliewlgnklttslsglspavaiiiilslfvlvhylfaSatAttaal 388
                    + + ai++  ++   r ++ +    +   W  ++l  g++ +a  l+++g ++ + + l+    g  p  +++  l+++ ++  lf S+tAt + +
     CTQ29168.1 439 NPIAAIIACLLMGKFRCINAE-SAYKAIHWPSIILIVGMMPFALALQKTGGVDLVVKGLMDVAGGEGPY-LMLGCLFVMCAAIGLFISNTATAVLM 532
                    455566666666666677777.5666778******************************9998855555.555666777888899*********** PP

  Na_sulph_symp 389 lpillavaqaipgappllvalllalatslagfllpyatgpnpivfgagylkvkdywrlGfilsiigllillllg 462
                    +pi la+a+++ g+ p  +a+ +a+a s a f++p++++ n +v+g g+ +  d+ ++G++++i+ +++++ll+
     CTQ29168.1 533 APIALAAAKSM-GVSPYPFAMVVAMAASAA-FMTPVSSPVNTLVLGPGKYSFSDFVKIGVPFTILVMVVCVLLI 604
                    ***********.999**************9.*************************************999987 PP

>> DctM  Tripartite ATP-independent periplasmic transporter, DctM component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5  18.0   5.2e-06     0.023     231     370 ..      15     149 ..       3     160 .. 0.75
   2 !   35.5  19.4   1.1e-12     5e-09     219     411 ..     418     604 ..     381     609 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.2e-06
        DctM 231 llgiftpteagavavvyalviallvyrrltleevaaallstakttaavlfilaaagifaglltltgvplklselllslsggk.llfLilvnllvlvlGm 328
                  + +f   ++ + a++++ ++a +++++ltl+e ++++ +         +++aa  i+   l  tgv++k++++l+s++g++   +Li  +l+v  lG 
  CTQ29168.1  15 AVVLFATGKVRMDAIALMVIVAFVLSGTLTLNEAFSGFSDPNV------ILIAALFIIGDGLVRTGVATKMGAWLVSVAGNSeTKMLIYLMLTVAGLGA 107
                 3444444444444555555556666888888888888777654......456677777788999***************999888************** PP

        DctM 329 fldttaaiiilvpilaPaaaklgidpihfgvvivlnlsigli 370
                 f++ t ++ i+ p+++ + a+++  p  + + + +++ i+ +
  CTQ29168.1 108 FMSSTGVVAIFIPVVLSVSARMNTSPSRLMMPLSFAGLISGM 149
                 **************************7777766665555443 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 1.1e-12
        DctM 219 alllpliiligillgiftpteagavavvyalviallvyrrltleevaaallstakttaavlfilaaagifaglltltgvplklselllslsggk..llf 315
                 a+ +++ ++  + l +  ++  + +a++++l+++ +  r ++ e+ ++a+        ++++ + ++  fa++l  tg    + + l+ ++gg+  +l+
  CTQ29168.1 418 APHAIFCLVLMVALMLTDEIPNPIAAIIACLLMGKF--RCINAESAYKAIHW-----PSIIL-IVGMMPFALALQKTGGVDLVVKGLMDVAGGEgpYLM 508
                 555677777777788888888888999999999888..77888877776543.....34444.456777888888888887777777777777768889 PP

        DctM 316 LilvnllvlvlGmfldttaaiiilvpilaPaaaklgidpihfgvvivlnlsiglitPPvGlalf.vassiakvsveeivkalvPflvvlvvalvlit 411
                 L    +++  +G+f++ ta++++++pi+++aa+ +g+ p  f +v+ +++s +++tP v+  +  +  + +k s+++ vk  vPf ++++v+ vl++
  CTQ29168.1 509 LGCLFVMCAAIGLFISNTATAVLMAPIALAAAKSMGVSPYPFAMVVAMAASAAFMTP-VSSPVNtLVLGPGKYSFSDFVKIGVPFTILVMVVCVLLI 604
                 999999999***********************************************7.55555405556679*************887777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.38
# Mc/sec: 4764.09
//
Query:       CTQ29169.1  [L=221]
Description: putative phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-25   88.4   0.0    7.2e-25   88.1   0.0    1.1  1  HAD_2           Haloacid dehalogenase-like hydrolase
    8.3e-17   62.2   0.0    1.7e-11   44.8   0.0    2.1  2  Hydrolase       haloacid dehalogenase-like hydrolase
    1.2e-08   35.6   0.0    1.4e-08   35.3   0.0    1.1  1  HAD             haloacid dehalogenase-like hydrolase
      1e-05   25.5   0.0    3.4e-05   23.8   0.0    1.9  2  Hydrolase_like  HAD-hyrolase-like
    0.00022   21.3   0.1     0.0011   19.1   0.1    2.2  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.0     2e-28   7.2e-25       2     178 .]       9     183 ..       8     183 .. 0.90

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 2e-28
       HAD_2   2 iFDlDgTlldteeliiqafnelleeyglselseeelrklig.lslrellrklgeseeeeekieellrkyneekkk..kevkpydgvkelLeeLkeagyk 97 
                 +FDlDgTl+d+ +++  ++ ++ +++    ++ +e+ ++i+  +   ++r++ +  + ee+i+  +r  ++ + +  + +  ++g+  lL++L+eag+ 
  CTQ29169.1   9 LFDLDGTLVDSLPVVERSWCKWGDRF---AIDHDEILSFIHgKQAITSIRHFMPG-RSEEDIQAEFRYLEQIEATdiEGIVALPGALALLNTLNEAGIP 103
                 8************************9...55777777777516667888888885.5566777666777777777788********************* PP

       HAD_2  98 lgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikviav 178
                  +ivTs+s  ++    ++ g+  + +v vt+e+v++ KP+p+ ++   e+l+l + e+ +v+D p ++ ++ +ag+++iav
  CTQ29169.1 104 WAIVTSGSIPVAHARHRAAGL-PMPEVFVTAEQVKHGKPAPDAYLLGAERLGLPAGECAVVEDAPAGLLSGLAAGCRTIAV 183
                 ********************7.899******************************************************97 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.4e-06     0.012       2      36 ..       6      44 ..       5      86 .. 0.73
   2 !   44.8   0.0   4.7e-15   1.7e-11     117     210 .]      84     177 ..      62     177 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.4e-06
                SEEEEESBTTTBCHHHHHHHHHHHH....CHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
   Hydrolase  2 ktvvfDkdGTLttgepsvedvivsa....alalaaalet 36
                k ++fD+dGTL+++ p+ve+ +++     a++  ++l +
  CTQ29169.1  6 KGFLFDLDGTLVDSLPVVERSWCKWgdrfAIDHDEILSF 44
                6799******************99866665555555554 PP

  == domain 2  score: 44.8 bits;  conditional E-value: 4.7e-15
                 HHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 117 lkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 +   p+a  ++++L++agi+++++t+++   a++  + +G    ++ ++++ ++++kp p++++  +++L+ +  e+a+V+D + ++  + aAg
  CTQ29169.1  84 IVALPGALALLNTLNEAGIPWAIVTSGSIPVAHARHRAAGLPMPEVFVTAEQVKHGKPAPDAYLLGAERLGLPAGECAVVEDAPAGLLSGLAAG 177
                 5678*****************************99999**55668999999999*******************************999998887 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0     4e-12   1.4e-08       2     128 ..       9     130 ..       8     175 .. 0.73

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 4e-12
         HAD   2 lfDfDgTLldgdsle.lllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaahra 99 
                 lfD+DgTL+d+ +     + +++ r+a +  + l     ++ + ++ +++    +e ++a ++ l++  a ++e +v          pgal+ll+   +
  CTQ29169.1   9 LFDLDGTLVDSLPVVeRSWCKWGDRFAIDHDEILSFIHGKQAITSIRHFMPGRSEEDIQAEFRYLEQIEATDIEGIV--------ALPGALALLNTLNE 99 
                 8**********444445555588888777555555557777777777777777777788888888877778888888........45********999* PP

         HAD 100 aGdrvvvvSgglrplvepllaelg..adevl 128
                 aG++ ++v++g  p++++  ++ g    ev 
  CTQ29169.1 100 AGIPWAIVTSGSIPVAHARHRAAGlpMPEVF 130
                 ***************9998877777655543 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.87   3.1e+03      39      55 ..      98     114 ..      98     132 .. 0.70
   2 !   23.8   0.0   9.5e-09   3.4e-05       3      49 ..     139     184 ..     137     205 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.87
                     HHCT-EEEEESSSSS-T CS
  Hydrolase_like  39 nnaGwksvLVltGvtrp 55 
                     n+aG+  + V++G    
      CTQ29169.1  98 NEAGIPWAIVTSGSIPV 114
                     68999999999997433 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 9.5e-09
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEES CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVl 49 
                     gKP+p +y   +e+lg++ +e+ ++ D   + ++++ +aG+++++V 
      CTQ29169.1 139 GKPAPDAYLLGAERLGLPAGECAVVEDA-PAGLLSGLAAGCRTIAVN 184
                     9***************************.99**************95 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1     3e-07    0.0011       1      43 [.       8     114 ..       8     165 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3e-07
                  EEEESTTTSE................................................................ETTEE-TTHHHHHHHHHHTT-EEE CS
  Hydrolase_6   1 flfDidGvLw................................................................rgdkaipgaaealnalraagkpvv 34 
                  flfD+dG+L+                                                                +g  a+pga  +ln+l++ag+p +
   CTQ29169.1   8 FLFDLDGTLVdslpvverswckwgdrfaidhdeilsfihgkqaitsirhfmpgrseediqaefryleqieatdiEGIVALPGALALLNTLNEAGIPWA 105
                  79*****************************************************************99999999*********************** PP

                  EEE---SS- CS
  Hydrolase_6  35 llTNnssks 43 
                  ++T +s   
   CTQ29169.1 106 IVTSGSIPV 114
                  ***997443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1725.35
//
Query:       CTQ29170.1  [L=164]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-70  235.9   1.4    2.7e-70  235.7   1.4    1.0  1  YfbU        YfbU domain
  ------ inclusion threshold ------
      0.093   11.8   0.3       0.17   11.0   0.3    1.3  1  WASH-7_mid  WASH complex subunit 7


Domain annotation for each model (and alignments):
>> YfbU  YfbU domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.7   1.4     3e-74   2.7e-70       1     166 []       1     164 []       1     164 [] 1.00

  Alignments for each domain:
  == domain 1  score: 235.7 bits;  conditional E-value: 3e-74
        YfbU   1 meltaaerliLanqykilalldpenaekYqrlrailerGyelelkelekeftelseeeceevldiLemyralqlsiknlkeeeqkeiearrleFsGfda 99 
                 me+t+a+rliL+nqyk++++ldp+nae+Y+rl++i+erGy l+++el++ef++l+ee+c++v+di+emy+al++s+ nlk++  + i++rr++F Gfda
  CTQ29170.1   1 MEMTNAQRLILSNQYKMMTMLDPDNAERYRRLQTIIERGYGLQMRELDREFGQLTEETCRTVIDIMEMYHALHVSWTNLKDA--AGIDERRVTFLGFDA 97 
                 9*********************************************************************************..9************** PP

        YfbU 100 neEkkllsYvrfliedeklyeelkkkkddlnShtpmldkYrrMLavwrecpkkykLsieeikqilnA 166
                 ++E+++l Yvrf++++e++y++++  ++++nS+tpm++kY+rML+vw++cp++y+Ls++ei+qi+nA
  CTQ29170.1  98 ATEARYLGYVRFMVNVEGRYSHFDAGTHGFNSQTPMWEKYQRMLSVWHACPRQYHLSSNEINQIINA 164
                 *****************************************************************98 PP

>> WASH-7_mid  WASH complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   1.8e-05      0.17     129     188 ..      10      74 ..       2      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.8e-05
  WASH-7_mid 129 yLektfYnlttvalhdwktYeemrnlakekyglelld.....shLpsqtleqgldvleimrnihv 188
                  L++++  +t++ + +++ Y++++++ ++ ygl++ +      +L ++t    +d++e+ + +hv
  CTQ29170.1  10 ILSNQYKMMTMLDPDNAERYRRLQTIIERGYGLQMREldrefGQLTEETCRTVIDIMEMYHALHV 74 
                 4777777889999**********************873333336788888888888888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1312.50
//
Query:       CTQ29171.1  [L=151]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-57  193.3   0.1    1.8e-57  193.2   0.1    1.0  1  DUF412    Protein of unknown function, DUF412


Domain annotation for each model (and alignments):
>> DUF412  Protein of unknown function, DUF412
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.2   0.1     1e-61   1.8e-57       1     141 []      11     149 ..      11     149 .. 0.99

  Alignments for each domain:
  == domain 1  score: 193.2 bits;  conditional E-value: 1e-61
      DUF412   1 lvkllkdGqkYlktwPlekeLaalfpenrvikatrfaikvmpalavltlvlqlylagsealpqailtalfllsLPlQGlywlGkraktpLppslaswyk 99 
                 +++l+++Gq+Y+ktwPl+k+La++f enr+i+atr+ai++mp++a++tl++q++l+g  +l  a++talf+lsLP+QGl+wlGkr+ tpLpps+++w++
  CTQ29171.1  11 FFSLFNRGQHYAKTWPLDKRLAPVFIENRIIRATRYAIRIMPPIAIFTLCWQIALGG--QLGPAVATALFALSLPMQGLWWLGKRSVTPLPPSILNWFY 107
                 6899*****************************************************..**************************************** PP

      DUF412 100 eikeklkeqgaalaaakekptyqdLaelLkkafkkldksfle 141
                 e++ kl+e+g+ala+++ kp+yq La++Lk+afk+ldk+fl+
  CTQ29171.1 108 EVRGKLQEAGQALAPVEGKPDYQALADTLKRAFKQLDKTFLD 149
                 ****************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1243.30
//
Query:       CTQ29172.1  [L=400]
Description: acetate kinase A and propionate kinase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.3e-176  587.1   0.1   1.5e-176  586.9   0.1    1.0  1  Acetate_kinase  Acetokinase family
  ------ inclusion threshold ------
      0.054   13.0   0.1      0.089   12.3   0.1    1.5  1  BcrAD_BadFG     BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> Acetate_kinase  Acetokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  586.9   0.1  1.6e-180  1.5e-176       2     390 .]       6     393 ..       5     393 .. 0.99

  Alignments for each domain:
  == domain 1  score: 586.9 bits;  conditional E-value: 1.6e-180
  Acetate_kinase   2 vLviNaGSsSlKfqlleaeakeevllkglveeilleeaellkklegekkeaektaiadheealklilntlkeekvikdlkeiaaighRvvhggek 96 
                     vLv+N+GSsSlKf++l+a ++++++l+gl+e+++l+ea++++k++g k+eae  a a+h+eal++i+nt+ + ++ +++++++aighR+vhggek
      CTQ29172.1   6 VLVLNCGSSSLKFAILDA-VNGDEYLSGLAECFHLPEARIKWKMDGSKQEAELGAGAAHSEALNFIVNTILA-QKPELSAQLTAIGHRIVHGGEK 98 
                     9*****************.8***************************************************9.79******************** PP

  Acetate_kinase  97 ftesvlitdevvekikdlielaplhNpanlegieaakkllpevk..nvavfDtafhqtlpeeaylyalpeelyeehgiRrygfHgtshkyvskra 189
                     +t+sv+i+++v++ ikd++++aplhNpa+l+gi +a k++p++k  nvavfDtafhqt+pee+ylyalp++ly+ehg+Rryg+Hgtsh yv+++a
      CTQ29172.1  99 YTSSVVIDESVIQGIKDAASFAPLHNPAHLIGIAEALKSFPHLKdkNVAVFDTAFHQTMPEESYLYALPYSLYKEHGVRRYGAHGTSHFYVTQEA 193
                     *******************************************999************************************************* PP

  Acetate_kinase 190 akilgkpledlnlivcHlGnGaSvaavknGksvdtsmgltpLeGlvmgtRsGdidpailvylaeteglsadeventlnkksGllglsglssDlre 284
                     akil+kp+e+ln+i+cHlGnG+Sv+a++nGk+vdtsmgltpLeGlvmgtRsGdidpai+++l++t g+s+d ++++l+k+sGllgl++++sD+r+
      CTQ29172.1 194 AKILNKPVEELNIITCHLGNGGSVSAIRNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIIFHLHDTLGMSVDAINKMLTKESGLLGLTEVTSDCRY 288
                     *********************************************************************************************** PP

  Acetate_kinase 285 vedaaeegdeeaelalkvyvhrlakyigeyaavlegkvDaivFTgGigenaalvrelvlkalevlglevdkeknk.nrsGedelisteqskvkvi 378
                     ved+++e + +a++a++vy+hrlakyig+y+a ++g++Da++FTgGigenaa+vrel+l +l vlg+evd+e+n  +r+G++++i++e ++  ++
      CTQ29172.1 289 VEDNYQEKA-DAKRAMDVYCHRLAKYIGSYTALMDGRLDAVIFTGGIGENAAMVRELSLGKLGVLGFEVDHERNLaARFGKSGFINKEGTR-PAV 381
                     *****8876.9***************************************************************77***************.9** PP

  Acetate_kinase 379 vvptnEelaiaq 390
                     v+ptnEel+iaq
      CTQ29172.1 382 VIPTNEELVIAQ 393
                     **********97 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   9.9e-06     0.089     182     236 ..     290     344 ..     164     348 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.9e-06
                  HHHHHTT--HHHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH CS
  BcrAD_BadFG 182 rdalsggekaedIlaglhraialrvialisrsggvtdevtltGGvakneaavkel 236
                  +d  ++ + a++ ++  ++ +a+++ ++    +g+ d v++tGG+ +n+a+v+el
   CTQ29172.1 290 EDNYQEKADAKRAMDVYCHRLAKYIGSYTALMDGRLDAVIFTGGIGENAAMVREL 344
                  56666677788889999999*********************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2951.26
//
Query:       CTQ29173.1  [L=715]
Description: phosphate acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.8e-128  427.3   0.3   6.8e-128  426.5   0.3    1.4  1  PTA_PTB   Phosphate acetyl/butaryl transferase
    2.5e-50  171.0   0.3    4.9e-50  170.1   0.3    1.5  1  AAA_26    AAA domain
    2.2e-30  104.6   0.1    1.1e-29  102.3   0.0    2.2  2  DRTGG     DRTGG domain
  ------ inclusion threshold ------
      0.055   13.6   0.0         21    5.3   0.0    3.4  3  LPD7      Large polyvalent protein-associated domain 7


Domain annotation for each model (and alignments):
>> PTA_PTB  Phosphate acetyl/butaryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.5   0.3  1.5e-131  6.8e-128       2     319 .]     392     707 ..     391     707 .. 0.99

  Alignments for each domain:
  == domain 1  score: 426.5 bits;  conditional E-value: 1.5e-131
                 HHHHHHHHHCTS--EEEES-TTSHHHHHHHHHHHHTTSSEEEEES-HHHHHHHHHHCTB--TT.-EEE-TTT-CCHHHHHHHHHHHCCCC.S-HCCHHH CS
     PTA_PTB   2 flerivekakkekkrivlpegedervlkAakelleegiadviLigdeaeikakaleldldlsg.ieivdpetsekleeyadelyelrkrkgvtieeare 99 
                 f ++++e a+k+ kr+vlpeg+++r++kAa+ ++e+gia+++L+g++ ei++ a++++++l++ ieivdpe  +  e+y+ +l+elrk+kg+t + are
  CTQ29173.1 392 FRYQLTELARKAGKRVVLPEGDEPRTVKAAAICAERGIATCVLLGNPDEINRVAAAQGVELGAgIEIVDPEVVR--ESYVGRLVELRKNKGMTEAVARE 488
                 7889*********************************************************999********99..9********************** PP

                 HTTSHHHHHHHHHHTTSSSEEEE-TTS-HHHHHHHHHHCT-B-TT----EEEEEEEETTEEEEEESSSS-SS--HHHHHHHHHHHHHHHHHCCSS--EE CS
     PTA_PTB 100 vvrdatyfaamlvklgeaDglvsGavnttadtlrpalqiiktkpgvklvSsvfimlledrlllfaDcavnvnPtaeelaeialesaktakalgeeeprv 198
                 +++d++++++++++++e+DglvsGav+tta+t+rp lq+ikt+pg +lvSsvf+mll++++++++Dca+n++Ptae+laeia++sa++a a+g +eprv
  CTQ29173.1 489 QLEDNVVLGTLMLEQDEVDGLVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPEQVYVYGDCAINPDPTAEQLAEIAIQSAESAIAFG-IEPRV 586
                 *********************************************************************************************.***** PP

                 EEE-SSSTTSS-SHHHHHHHHHHHHHHHH-TTSEEEEEE-HHHHH-HHHHHHH-TTSTTTT--SEEE-SSHHHHHHHHHHHHHCCTEEEEEEEEESBSS CS
     PTA_PTB 199 AlLSyStkgsakgesvekvrealkivkekapdlvvdGelqlDaAlseevaekkapesevaGkAnvlvfPdLeagnigykivqrlakaeaiGPilqGlak 297
                 A+LSySt +s+ g++vekvrea+++++ek+pdl++dG+lq+DaA++++va++kap+s+vaG+A+v++fPdL++gn +yk+vqr a++++iGP+lqG++k
  CTQ29173.1 587 AMLSYSTGTSGAGSDVEKVREATRLAQEKRPDLMIDGPLQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQGMRK 685
                 *************************************************************************************************** PP

                 -EEE--TT--HHHHHHHHHHHH CS
     PTA_PTB 298 PvndlSrgasvedivnvaaita 319
                 PvndlSrga v+div ++a+ta
  CTQ29173.1 686 PVNDLSRGALVDDIVYTIALTA 707
                 ********************97 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.1   0.3   1.1e-53   4.9e-50       1     197 [.       3     230 ..       3     231 .. 0.91

  Alignments for each domain:
  == domain 1  score: 170.1 bits;  conditional E-value: 1.1e-53
      AAA_26   1 rtifvtgtdtgvGKTvvslgLvralkrkgvkvgyfKPiqtgieededselikellgldq.tyelpeplalsaplspelaarqegedidlekiv...kel 95 
                 rti++++t+t+vG+T+vslg++ra++rkgv++++fKPi+++++ ++ ++ +++++++++ t+ ++epl +s+  ++ l+++q  +d+ +e+i+   +++
  CTQ29173.1   3 RTIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPRSGGDAPDQTTTIVRASSsTTTAAEPLKMSHV-ESLLSSNQ--KDVLMEEIIanyHAN 98 
                 79*****************************************************999856889******975.66666655..6799*******999* PP

      AAA_26  96 ekdadivvVEGagglgvpiteellnadiaknlgapvilVargglgtinqllltiealr.....qknvrvlGvilNkvrnp..e................ 171
                 ++da++v+VEG+ ++++++++++ln++iak+l+a++++V++ g++t++ql  +ie+ r      kn  ++Gvi+Nk+++p  +                
  CTQ29173.1  99 TQDAEVVLVEGLVPTRKHQFAQALNFEIAKTLNAEIVFVMSQGTDTPEQLNERIELTRnsfggAKNTSITGVIVNKLNAPvdDqgrtrpdlseifddss 197
                 **********************************************************555555899*************7615556677778888899 PP

      AAA_26 172 .......nvetlekksgipvlGvvPylpdleap 197
                        + ++l+k s +pvlG+vP++ dl+a+
  CTQ29173.1 198 kakivkiDPAQLQKGSTLPVLGAVPWSFDLIAT 230
                 999999999999999**************9986 PP

>> DRTGG  DRTGG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.76   3.4e+03       1      87 [.     125     136 ..      80     149 .. 0.61
   2 !  102.3   0.0   2.4e-33   1.1e-29       1     104 [.     234     345 ..     234     346 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.76
                 HHHHHTT-EEEE--..SS--E-EEEE-SS-HHHHHHHHHTSEEEEEETT-HHHHHHHTT-TEEEEEEETT----HHHHHHHHHHT-- CS
       DRTGG   1 eiaealgaevlnggeeelrrvekvvvgamsvenmlerlkegdlvivpGDRediqlaaleagiaalilTgglepseevlklaeeaglp 87 
                 eia++l+ae++                                                                            
  CTQ29173.1 125 EIAKTLNAEIV---------------------------------------------------------------------------F 136
                 34444444444...........................................................................3 PP

  == domain 2  score: 102.3 bits;  conditional E-value: 2.4e-33
                 HHHHHTT-EEEE--..SS--E-EEEE-SS-HHHHHHHHHTSEEEEEETT-HHHHHHHTT-T.....EEEEEEETT----HHHHHHHHHHT...--EEE- CS
       DRTGG   1 eiaealgaevlnggeeelrrvekvvvgamsvenmlerlkegdlvivpGDRediqlaaleag.....iaalilTgglepseevlklaeeag...lpvlsv 91 
                 + a++l+a+++n+g+ ++rrv++v+++a+s+++mle++++g+l+++++DR d+++aa++a+     i a++lTgg+e+++++ kl+e+a    lpv+ v
  CTQ29173.1 234 DMAHHLNATIINEGDINTRRVKSVTFCARSIPHMLEHFRPGSLLVTSADRPDVLVAACLAAmngveIGAILLTGGYEMDARISKLCERAFatgLPVFMV 332
                 5799*********************************************************************************************** PP

                 SS-HHHHHHHHHT CS
       DRTGG  92 eldtfttakrinq 104
                 +++t++t+  +++
  CTQ29173.1 333 NTNTWQTSLSLQS 345
                 *******998876 PP

>> LPD7  Large polyvalent protein-associated domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.093   4.1e+02      29      72 ..     277     321 ..     268     336 .. 0.78
   2 ?    2.2   0.0     0.045     2e+02      23      78 ..     401     457 ..     379     465 .. 0.70
   3 ?    5.3   0.0    0.0047        21      35      72 ..     600     637 ..     584     645 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.093
        LPD7  29 ievtsddddeavaaalelAqakw..gsltvsGseeFkreaweaaae 72 
                 ++ ts+d+++++ aa  +A+     g++ ++G  e  +++ +++ +
  CTQ29173.1 277 LV-TSADRPDVLVAACLAAMNGVeiGAILLTGGYEMDARISKLCER 321
                 44.999999**999999999994459*******9999998888752 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.045
        LPD7  23 tDrgdrievtsddddeavaaalelAqakwgsltvsGse.eFkreaweaaaerglevt 78 
                 +  g+r+++ + d++++v+aa   A+    +  + G++ e  r a+ +++e g  ++
  CTQ29173.1 401 RKAGKRVVLPEGDEPRTVKAAAICAERGIATCVLLGNPdEINRVAAAQGVELGAGIE 457
                 567899888777788999998888866676666666652677777777777754444 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0047
        LPD7  35 dddeavaaalelAqakwgsltvsGseeFkreaweaaae 72 
                 +d e+v+ a +lAq+k   l ++G+ ++ +++   +a+
  CTQ29173.1 600 SDVEKVREATRLAQEKRPDLMIDGPLQYDAAVMADVAK 637
                 56799***********99***********999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 5451.46
//
Query:       CTQ29174.1  [L=183]
Description: putative NUDIX hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-18   66.3   0.1    4.2e-18   65.7   0.1    1.3  1  NUDIX       NUDIX domain
  ------ inclusion threshold ------
       0.14   11.4   0.1       0.18   11.1   0.1    1.1  1  ATP_bind_2  P-loop ATPase protein family


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.1   4.7e-22   4.2e-18       2     119 ..      37     153 ..      36     164 .. 0.82

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 4.7e-22
                 EEEEEEEEEEETTSEEEEEEES..SSSTTT.EE.SSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE..EEEEEEEEEEEECS CS
       NUDIX   2 lrravgvvllnekgevLlvrrs..kkpfpg.We.lPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygd..eheilyvfleeveg 94 
                 ++ra  +v+ ++ g++L++rr+  k+ +pg  + + gG v+++E + e ArRE+eEE+G+    + + +       ++++y+d  ++ +  +f +  +g
  CTQ29174.1  37 RHRATYIVVHDGMGKILVQRRTetKDFHPGmLDaTAGGVVQADEQLLESARREAEEELGI--AGVPFAD------HGQFYYEDkfCRVWGSLFSCVSHG 127
                 89*********************99999996656**********999************9..5566666......3344555555667777999***** PP

                 GCSSTSTTTEEEEEEEEHHHH..HHHH CS
       NUDIX  95 elepndenevsevrwvpleel..lkek 119
                   +++ e+evsev+w+++ee+    ++
  CTQ29174.1 128 PFALQ-EEEVSEVCWLTPEEItaRCDE 153
                 ****9.***************544444 PP

>> ATP_bind_2  P-loop ATPase protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1     2e-05      0.18      66     133 ..      24      91 ..       2      96 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2e-05
                 SHHHHHHHHHTSXTTSEEEEEEEEXXHHHHHHHCTSSSXSSTTSXXXSSHHHHHHHHHHTHHHHHTXS CS
  ATP_bind_2  66 saelleqaeellekaitprilfleadddtlvrryedtrrshPlsakdlslegiakerelleplrarad 133
                 ++++ eq+  +  ++ +  i+  +   ++lv+r  +t+  hP  ++ ++   ++++++lle  r +a+
  CTQ29174.1  24 AQSSREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFHPGMLDATAGGVVQADEQLLESARREAE 91 
                 33445555666667788889999*******************9999998888*********9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1472.44
//
Query:       CTQ29175.1  [L=183]
Description: putative phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-24   86.8   0.0    2.4e-24   86.4   0.0    1.1  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
    5.5e-11   43.4   0.0      1e-10   42.5   0.0    1.4  1  Metallophos    Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
       0.21   11.5   0.0       0.33   10.9   0.0    1.3  1  NFACT-C        NFACT protein C-terminal domain


Domain annotation for each model (and alignments):
>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.0     4e-28   2.4e-24       1     161 [.       1     161 [.       1     163 [. 0.83

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 4e-28
  Metallophos_2   1 MklaiiSDlHsnldaleavlealkevgvdaiihaGDl...eeeep...........evleellela.pvlaVrGNnDeevveedvlreaaelgtdl 81 
                    Mkl++ SD+H++l a+e+vle++++ g+  +i +GD+   +   p           ev e+l ++a +++aVrGN+D     ++v +   ++    
     CTQ29175.1   1 MKLMFASDIHGSLPATERVLERFAQSGARWLIILGDVlnhG---PrnalpegyapgEVAERLNSVAeRIVAVRGNCD-----SEVDQMLLRFPMTA 88 
                    9***********************************64432...12345566666679999999999**********.....33333333444444 PP

  Metallophos_2  82 peeaelelagekvlliHgdplgvkdalaellkeaeegsdvvvcGHtHvpevekeggvlvvnPGsvgeprdgdpetyaild 161
                    p +++l+ ++ +++l+Hg+ l  +d+l +l+       dv+++GHtH+p +ek+g +++ nPGsv+ p  g  ++y +ld
     CTQ29175.1  89 PWQQVLS-ERYRLFLTHGH-LYSPDNLPPLAAG-----DVLAYGHTHIPVAEKRGAIYLFNPGSVSIPKGGYSASYGLLD 161
                    8888999.999********.5666777777776.....9*****************************999999999987 PP

>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   1.7e-14     1e-10       1     123 [.       1     126 [.       1     154 [. 0.82

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 1.7e-14
                  EEEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS.........HHHHHHHHHHHHHHHHTSEEEEEC-TTS.............. CS
  Metallophos   1 lrilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrg.........dlekellellaalvkypipvylllGNHe.............. 75 
                  +++++ +D+H     g+l++++++l++++++ ++ +++++GD+ ++g          + + ++e l+ + +   ++++++GN++              
   CTQ29175.1   1 MKLMFASDIH-----GSLPATERVLERFAQS-GARWLIILGDVLNHGprnalpegyAPGE-VAERLNSVAE---RIVAVRGNCDsevdqmllrfpmta 88 
                  7999******.....*************999.******************8777755555.5555566666...99********99999999999986 PP

                  CHHHHHHHHHHHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE CS
  Metallophos  76 gfeeellnkygylgifsepwrsdaevfnnlplaslgsgslkvlllhGg 123
                   +++ l+++y+ + + ++++  d    n +pla+        +l++G+
   CTQ29175.1  89 PWQQVLSERYRLFLTHGHLYSPD----NLPPLAA------GDVLAYGH 126
                  55558888888888889999888....9999999......88888888 PP

>> NFACT-C  NFACT protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.5e-05      0.33      17      47 ..      76     106 ..      63     108 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.5e-05
     NFACT-C  17 peDeileaipvcAPyaaLqkykYkvKlqPGs 47 
                 + D++l   p+ AP++ + + +Y+  l+ G+
  CTQ29175.1  76 EVDQMLLRFPMTAPWQQVLSERYRLFLTHGH 106
                 56999999****************9998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1374.62
//
Query:       CTQ29176.1  [L=212]
Description: putative enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-70  233.2   1.3    7.3e-70  232.7   1.3    1.2  1  GST_C_4   Glutathione S-transferase, C-terminal domain
    6.6e-11   42.5   0.0    1.2e-10   41.6   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    4.1e-10   39.9   0.0    7.2e-10   39.1   0.0    1.4  1  GST_N     Glutathione S-transferase, N-terminal domain
      2e-08   34.4   0.0    3.2e-08   33.8   0.0    1.3  1  GST_N_2   Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.016   15.9   0.0      0.044   14.5   0.0    1.8  1  GST_N_4   Glutathione S-transferase N-terminal domain


Domain annotation for each model (and alignments):
>> GST_C_4  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.7   1.3     2e-73   7.3e-70       1     117 []      95     211 ..      95     211 .. 1.00

  Alignments for each domain:
  == domain 1  score: 232.7 bits;  conditional E-value: 2e-73
                 SHHHHHHHHHHHHHHHHS-HHHHHHT-CHHHHC--------HHHHHHHHHHHHHHHHHTTT--SSTTSS--HHHHHHHHHHHHHHTTT----HHHHHHH CS
     GST_C_4   1 dlekrararqiqawlrsdlmaireerptdvvfggakkadlsaegkasaekllavaeallvhgqqnlfgewsiadtdlalminrlvlhgdkvpealadya 99 
                 dl+krararqiqawlrsdlm+ireer+t+vvfggak++dls++g++saekl+a+a++ll+hg+qnlfgewsiad+dlalm+nrlvl+gdkvpealadya
  CTQ29176.1  95 DLQKRARARQIQAWLRSDLMPIREERSTAVVFGGAKMPDLSEAGRQSAEKLFATATMLLAHGGQNLFGEWSIADADLALMLNRLVLNGDKVPEALADYA 193
                 89************************************************************************************************* PP

                 HHHHT-HHHHHHHHHCH- CS
     GST_C_4 100 afqwqrasvqryialsak 117
                 +fqwqras+qry+alsak
  CTQ29176.1 194 SFQWQRASIQRYVALSAK 211
                 ****************98 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   3.4e-14   1.2e-10       6      74 ..      15      86 ..      13      87 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 3.4e-14
                TSHHHHHHHHHHHHHT--EE..EE---TTTTHHHHHHH-.TT--SSEEETTS-EEESHHHHHHHHHHHH-GG CS
     GST_N_3  6 aSpyarrvrlaLnekglpve..vvevtpgehdeellakn.plgkvPvLeddgealtdSlaIidyLeelypgp 74
                +Spy++ v +aL+ek lp++  +v+++ geh ++    +  +++vP Le d+ al +S+aI +yL+e+++ p
  CTQ29176.1 15 FSPYVMSVYVALQEKSLPFTlkTVDLNRGEHLQAGWTGYaATRRVPLLEVDDFALSESSAITEYLDERFAPP 86
                7*****************762268999****666655555****************************9866 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0     2e-13   7.2e-10      10      76 .]      15      81 ..       4      81 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 2e-13
                TSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEETTEEEESHHHHHHHHHH CS
       GST_N 10 gsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedngkkltESraIleYiar 76
                 sp+++++ ++l++k +++  + +d++ ge+ ++ ++      +vP+Le++++ l ES aI eY+++
  CTQ29176.1 15 FSPYVMSVYVALQEKSLPFTLKTVDLNRGEHLQAGWTGYAATRRVPLLEVDDFALSESSAITEYLDE 81
                4689999**********************************************************85 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   8.9e-12   3.2e-08       1      69 [.      15      81 ..      15      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 8.9e-12
                S-HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHHH CS
     GST_N_2  1 aCPwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlrylet 69
                ++P++  v +al++k l+++++ v+l + g++  +    + ++  VP+L + d   + eSs+I +yl++
  CTQ29176.1 15 FSPYVMSVYVALQEKSLPFTLKTVDL-NRGEHLQAGWTGYAATRRVPLLEV-DDFALSESSAITEYLDE 81
                89**********************55.345555566899999********9.77*************98 PP

>> GST_N_4  Glutathione S-transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.2e-05     0.044      30      85 ..      55     113 ..      17     117 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-05
     GST_N_4  30 pkgklPfielngelliadsefiieflkekg..vdld....aelseeqkadaralkalveekl 85 
                  + ++P +e+++   +++s+ i e+l e++  +  +       + +++a+ar ++a++ + l
  CTQ29176.1  55 ATRRVPLLEVDDF-ALSESSAITEYLDERFapP--EweriYPHDLQKRARARQIQAWLRSDL 113
                 46789*****755.****************643..44255444447789*******998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1583.66
//
Query:       CTQ29177.1  [L=209]
Description: putative S-transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-13   49.9   0.0      5e-13   49.2   0.0    1.4  1  GST_N     Glutathione S-transferase, N-terminal domain
    6.4e-11   42.1   0.1    1.4e-10   41.1   0.1    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    9.6e-11   42.0   0.0    1.7e-10   41.2   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
      1e-10   41.6   0.0    1.6e-10   41.0   0.0    1.3  1  GST_C     Glutathione S-transferase, C-terminal domain
    2.4e-09   37.4   0.0    4.4e-09   36.5   0.0    1.4  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    8.1e-07   29.2   0.0    1.3e-06   28.5   0.0    1.3  1  GST_C_3   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   1.7e-16     5e-13       5      76 .]       4      81 ..       1      81 [. 0.94

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.7e-16
                EESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET.......TEEEESHHHHHHHHHH CS
       GST_N  5 lysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn.......gkkltESraIleYiar 76
                ly +++ p+ h+i l+l+++++ y+ +++d ++ge+  p++l + p+ kvPa +d+        + ++ES+aIl Y+a+
  CTQ29177.1  4 LYYAPT-PNGHKITLFLEEAELAYRLIRVDIGKGEQFHPQFLAISPNNKVPAIVDHmpadggaPLSVFESGAILLYLAE 81
                777888.9****************************************************988899***********95 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.1   4.5e-14   1.4e-10       2      69 .]     128     192 ..     127     192 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 4.5e-14
                 HHHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHH.HHHHHHHS----TT-HHHHHHHHH CS
     GST_C_2   2 aaveraleqldaaldaleahLadspflfGdqptlaDialapflv.rlraagpgfdireaypnlraWler 69 
                  a+er++ + ++   +l+++L++sp+l+Gd+ ++aDia++p++   +r++       + yp ++ W+er
  CTQ29177.1 128 YAIERFQVETQRLYGVLNQRLGCSPWLGGDHYSIADIAAWPWVNcHVRQRI----DLANYPAVHNWYER 192
                 5899***************************************98999998....5789********98 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   5.6e-14   1.7e-10       1      72 [.       4      84 ..       4      90 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 5.6e-14
                EES-TTSHHHHHHHHHHHHHT--EEE..E---TTTT.HHHHHHH-TT--SSEEETT..S-.....EEESHHHHHHHHHHHH- CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvev..vevtpgeh.deellaknplgkvPvLedd..ge.....altdSlaIidyLeelyp 72
                Ly++p+ p+  ++ l+L+e  l++++  v++ +ge   +++la++p++kvP+++d   ++     ++++S aI+ yL e+ +
  CTQ29177.1  4 LYYAPT-PNGHKITLFLEEAELAYRLirVDIGKGEQfHPQFLAISPNNKVPAIVDHmpADggaplSVFESGAILLYLAEKSG 84
                899999.******************9556666888889***************76555223579*************99875 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   5.5e-14   1.6e-10      29      93 .]     135     197 ..     110     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 5.5e-14
                 HHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C  29 ekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerimarp 93 
                  ++ + + +l+ +l  + +l Gd++++ADia+ p++n++ r ++++  + +p+++ w+eri +rp
  CTQ29177.1 135 VETQRLYGVLNQRLGCSPWLGGDHYSIADIAAWPWVNCHVRQRIDL--ANYPAVHNWYERIKQRP 197
                 5788999***************************************..6*************998 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   1.5e-12   4.4e-09       3      69 ..      10      81 ..       9      82 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.5e-12
                HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-....CTTE...EEESHHHHHHHHHH CS
     GST_N_2  3 PwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwd....kdgq...vineSseIlrylet 69
                P  h+++++l++  l ++++ v +  kg++ +++f++++p+ +VP+++d    + g     + eS +Il yl++
  CTQ29177.1 10 PNGHKITLFLEEAELAYRLIRV-DIGKGEQFHPQFLAISPNNKVPAIVDhmpaD-GGaplSVFESGAILLYLAE 81
                778*******************.668***********************66433.44576666*********87 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   4.3e-10   1.3e-06      26      93 ..     134     200 ..     115     204 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 4.3e-10
                 HHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHHTCC.CC-HHHHHHHHHHHTSHHHH CS
     GST_C_3  26 eerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleeaeal.kkfpklkalyervearpkik 93 
                 + + ++ ++++++ l    +++l gd+ ++AD+a + +++ + ++ ++ +++p + ++yer+++rp+ +
  CTQ29177.1 134 QVETQRLYGVLNQRLG--CSPWLGGDHYSIADIAAWPWVNCHVRQRIDlANYPAVHNWYERIKQRPATA 200
                 5566788889999999..899********************99994455*****************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1626.04
//
Query:       CTQ29178.1  [L=120]
Description: D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-24   87.0   0.5    1.3e-24   86.8   0.5    1.0  1  FolB      Dihydroneopterin aldolase
  ------ inclusion threshold ------
       0.11   12.5   0.3       0.35   10.9   0.3    1.8  1  HTH_19    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> FolB  Dihydroneopterin aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.5   1.5e-28   1.3e-24       1     110 [.       8     116 ..       8     117 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 1.5e-28
                 EEEEEEEEEEEESSSHHHHHC-EEEEEEEEEEE-CHHHHHHTTGGGSS-HHHHHHHHHHHHHSSEES-HHHHHHHHHHHHHCHSTESEEEEEEEETTSS CS
        FolB   1 ieikglrvpaiiGvnpeErelkQrvvvdleleldlskaaesddledtvdYaelakavkelvesssfkllEalaeriaealleefpvekvevrveKpnap 99 
                 i+ik+lr++++iG+ +eE  ++Q+vvv++ +++  +ka  s+d++d+++Y++++k++  ++e+ +f llE+l +++++  +e++ v+ +ev++ K++a+
  CTQ29178.1   8 IRIKNLRLRTFIGIKEEEIANRQDVVVNVAIHYPADKARDSEDINDALNYRTITKRIISHLENGRFSLLEKLTQDVLNIACEHHWVTYAEVEIDKLHAL 106
                 89************************************************************99****************99977*************6 PP

                 STCESEEEEEE CS
        FolB 100 igaadavgvei 110
                  + ad+v++++
  CTQ29178.1 107 -RYADSVSMTM 116
                 .559***9986 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   3.8e-05      0.35      20      49 ..      53      84 ..       9      90 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.8e-05
      HTH_19 20 e....rlgisrskisaiEngkkdvpsaelllkia 49
                +    r+++ ++ is++Eng++  +  +l ++++
  CTQ29178.1 53 DalnyRTIT-KRIISHLENGRF-SLLEKLTQDVL 84
                144447777.************.55556655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 916.11
//
Query:       CTQ29179.1  [L=297]
Description: conserved hypothetical protein; putative NAD(P)-binding Rossmann-fold domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.1e-22   77.7   0.0    1.2e-21   77.2   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
      1e-18   66.8   0.2    2.7e-18   65.5   0.2    1.7  1  DUF1731          Domain of unknown function (DUF1731)
    8.5e-08   32.0   0.0    9.4e-06   25.2   0.0    2.9  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    1.2e-05   25.3   0.0    1.8e-05   24.7   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
     0.0002   20.6   0.0     0.0011   18.3   0.0    2.0  2  NAD_binding_4    Male sterility protein
     0.0033   17.0   0.0     0.0049   16.5   0.0    1.2  1  NmrA             NmrA-like family
     0.0064   15.6   0.0      0.011   14.9   0.0    1.3  1  RmlD_sub_bind    RmlD substrate binding domain
  ------ inclusion threshold ------
      0.051   12.7   0.0        3.5    6.7   0.0    2.1  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.064   13.8   0.0       0.14   12.8   0.0    1.5  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
       0.17   11.3   0.0       0.43   10.0   0.0    1.6  2  adh_short        short chain dehydrogenase
       0.19   10.7   0.0       0.28   10.2   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
       0.22   12.0   4.7      0.059   13.8   1.4    1.7  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
       0.24   11.6   0.0       0.47   10.6   0.0    1.4  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.0     9e-25   1.2e-21       1     228 [.       3     214 ..       3     234 .. 0.85

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 9e-25
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S..---HHHHHHSHHHHHHHHTHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAa..vggvaassedpadfieknlqgtln 97 
                 il+tG+tG+iG++l+ +lle g+ v++ +r +++ +  +++        +t   ++e   + +++davi+lA+  +++ ++++e+++++ ++ + +t++
  CTQ29179.1   3 ILLTGGTGLIGRHLIPRLLELGHSVTVSTRHPDTARARLDP-------RVTLWRDFEGHHHLNDIDAVINLAGepIADKRWTAEQKQRLCHSRWDLTQR 94 
                 89*****************************8888776655.......4555556666666669*******98899*********************** PP

                 HHHHHHHHTCT..EEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH.T-EEEEEEESEEESTTS-TTSTTSHHHHHHHHH CS
   Epimerase  98 lleaarkagvk..rllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy.glnaiilrlfnlyGprngegevsrvipalirki 193
                 l+  +++++     l+  s    YG+  e+     + t++ +p++ +  +Kl++ +   a  aq   ++++ lr   +  pr       +++ ++   +
  CTQ29179.1  95 LVGLIHASDTPpsVLISGSAIGYYGDLGEV-----VVTEEEPPHNEFT-HKLCARWEQIACEAQSeRTRVCLLRTGVVLAPR------GGILGKMTPAF 181
                 ******996665355555567889999994.....3334447899998.9*************9989***************......88888888888 PP

                 HTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 194 legkqevtllgdgtalRdflyveDvaeaillvleh 228
                 ++g      +g+g++   +++++D++++il++l++
  CTQ29179.1 182 KLGL--GGPIGNGRQYLAWIHIDDMVNGILWLLDN 214
                 8887..5567***********************99 PP

>> DUF1731  Domain of unknown function (DUF1731)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.2   1.9e-21   2.7e-18       1      47 []     249     295 ..     249     295 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 1.9e-21
     DUF1731   1 vPafalklllGemaellLegqrVlPkrLleaGFqFrypdleeALrdl 47 
                 vPa+a++ll+Ge   l+L+gqr+lPkrL++aGF Fr+ dl+eAL+d+
  CTQ29179.1 249 VPAAAIRLLMGESTVLVLGGQRALPKRLEAAGFAFRWYDLDEALKDV 295
                 9********************************************95 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   6.8e-09   9.4e-06       1     254 [.       4     229 ..       4     249 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 6.8e-09
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHT..TS CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsf..ek 94 
                    L TG++G iG +l+ +Lle g+ v++ +r+ ++ + +r++      +      ++l   D + ++         ++d+v+nLA++   d+ +  e+
     CTQ29179.1   4 LLTGGTGLIGRHLIPRLLELGHSVTVSTRHPDT-ARARLDP-----R------VTLW-RDFEGHHH------LNDIDAVINLAGEPIADKRWtaEQ 80 
                    78**********************886665554.5466654.....3......3332.24444333......3457*********99999984467 PP

                    HHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHH.H---EEEEEE-EEESTTS- CS
  GDP_Man_Dehyd  95 PeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyrea.yglfavngilfnhesprrg 189
                     ++        t+rL+ +i a    +   ++  S    YG++ ev +tE+ p + +      Kl a w  ++++ +     ++  ++     pr  
     CTQ29179.1  81 KQRLCHSRWDLTQRLVGLIHASDT-PPSVLISGSAIGYYGDLGEVVVTEEEPPHNEFT---HKLCARWEQIACEAQsERTRVCLLRTGVVLAPRG- 171
                    77889999999********99875.4556667777789************99666653...5999999999987651668899999999999996. PP

                    TTSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEE CS
  GDP_Man_Dehyd 190 etfvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgeths 254
                       +  k+t+a    +lg+     +Gn+++   w h++D+v+++  +l +d    +++ +   + 
     CTQ29179.1 172 --GILGKMTPAF---KLGLGGP--IGNGRQYLAWIHIDDMVNGILWLLDNDLRGPFNMVSPYPVH 229
                    ..4557777665...5666444..6******************9999999988888776655555 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.3e-08   1.8e-05       1      77 [.       7      76 ..       7     138 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.3e-08
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHH CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggkdeeg 77
                    G+tG +Gr+l+ +ll+  gh+vt+ +R+p+ + +   ++++++   d++      ++l+++daV+  +g    d++ 
      CTQ29179.1  7 GGTGLIGRHLIPRLLEL-GHSVTVSTRHPDTARAR-LDPRVTLWR-DFE----GHHHLNDIDAVINLAGEPIADKRW 76
                    9****************.5************9853.357777655.444....467888999999888776664444 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   7.7e-07    0.0011       1      46 [.       5      46 ..       5     101 .. 0.79
   2 ?   -0.2   0.0      0.33   4.5e+02     184     209 ..     145     176 ..     137     213 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.7e-07
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT- CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeele 46
                   lTG+TG +G++L+ +LL+      +++  R  +   a++Rl+  ++
     CTQ29179.1  5 LTGGTGLIGRHLIPRLLELGH--SVTVSTRHPDT--ARARLDPRVT 46
                   8******************98..78999888865..7777766655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.33
                    HHHHHHHHHHH---EEEEEE-EEE-.......- CS
  NAD_binding_4 184 EklvrearrrsglpvvivRpsiitg.......e 209
                    E++  ea+++ + +v+ +R +++++       +
     CTQ29179.1 145 EQIACEAQSE-RTRVCLLRTGVVLAprggilgK 176
                    8899999977.999********99844444440 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.5e-06    0.0049       1      37 [.       3      39 ..       3      44 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.5e-06
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHH CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtksela 37
                Il +G+TG +G++++  ll+ gh+v + +R +++ +a
  CTQ29179.1  3 ILLTGGTGLIGRHLIPRLLELGHSVTVSTRHPDTARA 39
                899***************************9988765 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   7.7e-06     0.011       1      61 [.       1      69 [.       1      86 [. 0.75

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.7e-06
                   EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT..........T--TTSHHHHHHHHHHH--SEEEE---- CS
  RmlD_sub_bind  1 mkilvtGanGqlGseLakqlaeeglevlaltre..........eldltdaeavaellkeakpdvvvnaAAy 61
                   mkil+tG++G++G++L+ +l e g++v+  tr+          ++ l++  + ++ l++   d+v+n+A  
     CTQ29179.1  1 MKILLTGGTGLIGRHLIPRLLELGHSVTVSTRHpdtararldpRVTLWRDFEGHHHLND--IDAVINLAGE 69
                   89**********************99999999877777766665555555555555555..5667777765 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0025       3.5       1      22 [.       3      24 ..       3      47 .. 0.86
   2 ?    3.9   0.0     0.017        24     153     181 ..     148     176 ..     136     192 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0025
                     EEEETTTSHHHHHHHHHHHHHB CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkkk 22
                     +l+tG++G iG++l+ ++l+  
       CTQ29179.1  3 ILLTGGTGLIGRHLIPRLLELG 24
                     799*************999875 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.017
                      GG--SSS--EEEEEEE-EETTGTTSSHHH CS
  Polysacc_synt_2 153 akeseekktkfvvvRfGNVlgSrGSvipl 181
                      a e+++++t++++ R G Vl+ rG ++ +
       CTQ29179.1 148 ACEAQSERTRVCLLRTGVVLAPRGGILGK 176
                      33445678****************98754 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.8e-05      0.14       6      41 ..       8      39 ..       2      46 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.8e-05
                   TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHH CS
  F420_oxidored  6 GaGnmgealasgllaagaqpheivvansrnpekaee 41
                   G+G +g+ l+ +ll+ g   h+++v  +r+p++a++
     CTQ29179.1  8 GTGLIGRHLIPRLLELG---HSVTVS-TRHPDTARA 39
                   9****************...****66.*****9986 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00031      0.43       3      39 ..       3      39 ..       1      44 [. 0.91
   2 ?   -2.9   0.0       2.8   3.8e+03      74      87 ..      56      69 ..      54      90 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00031
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseeklee 39
                +l tG+++ IGr +  +l++ G +v+v  r+++++++
  CTQ29179.1  3 ILLTGGTGLIGRHLIPRLLELGHSVTVSTRHPDTARA 39
                89****************************9998865 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.8
                HHSSESEEEE---S CS
   adh_short 74 klgkldvLvnNAGi 87
                +l  +d+++n AG 
  CTQ29179.1 56 HLNDIDAVINLAGE 69
                67889999999997 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0002      0.28       2      26 ..       5      29 ..       4      44 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0002
   3Beta_HSD  2 vtGgaGFlGralvkeLvrleelkev 26
                +tGg+G +Gr+l+ +L++l++  +v
  CTQ29179.1  5 LTGGTGLIGRHLIPRLLELGHSVTV 29
                79****************9975554 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.4   4.3e-05     0.059       1      64 [.       7      74 ..       7     117 .. 0.60
   2 ?   -2.9   0.1       5.9   8.2e+03      14      25 ..     237     248 ..     226     284 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.3e-05
  Glyco_trans_4_4  1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrpspladlaalral.......r 64
                     gG g   ++l+ +L ++Gh+Vtv t++p++++  +  ++v+++r ++   +++l+d +a+  l       +
       CTQ29179.1  7 GGTGLIGRHLIPRLLELGHSVTVSTRHPDTARA-RLDPRVTLWR-DFEG-HHHLNDIDAVINLagepiadK 74
                     78888899**********************999.5566788777.4443.346777777644433333332 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.9
  Glyco_trans_4_4  14 LaarGheVtvlt 25 
                      L  + h+  ++ 
       CTQ29179.1 237 LGHALHRPAIFR 248
                      333333333332 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00034      0.47       6      47 ..       8      49 ..       6      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00034
                   --SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-S CS
  NAD_binding_2  6 GlGvMGsnmalnllkagykvavynrtkekveelvaegakaae 47
                   G+G +G++++ +ll+ g++v+v  r+++ +++ ++ ++++  
     CTQ29179.1  8 GTGLIGRHLIPRLLELGHSVTVSTRHPDTARARLDPRVTLWR 49
                   99*************************999988877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2269.23
//
Query:       CTQ29180.1  [L=175]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-24   87.6   0.0    1.4e-24   87.3   0.0    1.1  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
      9e-09   35.6   0.0    1.1e-08   35.3   0.0    1.1  1  Acetyltransf_1  Acetyltransferase (GNAT) family
     0.0017   18.0   0.0     0.0035   17.0   0.0    1.5  2  Acetyltransf_8  Acetyltransferase (GNAT) domain
     0.0017   18.7   0.0     0.0025   18.2   0.0    1.3  1  Acetyltransf_7  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.021   14.9   0.0      0.027   14.6   0.0    1.2  1  Acetyltransf_4  Acetyltransferase (GNAT) domain
       0.04   13.9   0.0      0.062   13.3   0.0    1.2  1  FR47            FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.0   4.7e-28   1.4e-24       1     137 [.       8     139 ..       8     140 .. 0.93

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 4.7e-28
  Acetyltransf_3   1 RLlLrplteeDlealfelrsdpevmrylpepltleeaeewlerawaeeseeegygwaivlkdtgviGsvglrdleeedeeaelgymlapsfwgkG 95 
                     RL L ++  +D + +++lr+dp+vmr+++e l++e+ ++ + ++ a+     g  +++++k ++++G++glr  +++++ea++gy l p+++gkG
      CTQ29180.1   8 RLSLTRFVTDDWPFFLRLRQDPQVMRFMGEVLSEEALRSVFVSRCAD----PG-VFVLRDKFGEALGDIGLRISPKNPHEADVGYALLPQAQGKG 97 
                     899********99999************************9976554....45.58886666656****************************** PP

  Acetyltransf_3  96 yateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     ya+ea+ra++ey f++lg++ + a +  eN++S r+lek Gf
      CTQ29180.1  98 YASEALRAVCEYGFTTLGVQAINAWVLGENRGSSRLLEKQGF 139
                     *****************************************9 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   3.8e-12   1.1e-08      20     117 .]      40     139 ..      15     139 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 3.8e-12
                     HHHH.HHHHHHSTTCEEEEEEET..TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHH CS
  Acetyltransf_1  20 seee.feesfsleaegllvaeed..geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaair 110
                     see+ +  + s+ a+ ++++++d  ge +G i+l++ p  ++++a + ++a  p+++gkG++s+ l+a+ e+ +   g+++i ++v   n+++ r
      CTQ29180.1  40 SEEAlRSVFVSRCADPGVFVLRDkfGEALGDIGLRISPK-NPHEADV-GYALLPQAQGKGYASEALRAVCEYGFTTlGVQAINAWVLGENRGSSR 132
                     4444455556666774444455558************99.4555555.**********************************999********** PP

                     HHHHTTE CS
  Acetyltransf_1 111 lYeklGF 117
                     l+ek GF
      CTQ29180.1 133 LLEKQGF 139
                     ******9 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.4   4.2e+03      15      25 ..      28      38 ..      18      53 .. 0.59
   2 !   17.0   0.0   1.2e-06    0.0035      89     141 ..      91     143 ..      74     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.4
                    SCCCHHHH--- CS
  Acetyltransf_8 15 rprvaewweea 25
                    +p+v+++++e 
      CTQ29180.1 28 DPQVMRFMGEV 38
                    33444443333 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.2e-06
                     HHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  89 aeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                     ++a gkg++++ lra+++y f+  +++ + +    +N+ + rllek+Gf++ +
      CTQ29180.1  91 PQAQGKGYASEALRAVCEYGFTTLGVQAINAWVLGENRGSSRLLEKQGFVRTQ 143
                     5678*********************************************9976 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   8.4e-07    0.0025       5      75 ..      57     140 ..      47     141 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 8.4e-07
                     EEEEEET.TEEEEEEEEEEES....TCTEE...EEE-GGGTTSSHHHHHHHHTT......SEEEEE.EEEE..THHHHHHHHHHTTEE CS
  Acetyltransf_7   5 vfVaedd.gkivGfialslld....aeitr...laVdpeyrgkGiGraLleaae......kgiile.qlel..naekaikfYeklGFe 75 
                     vfV++d+ g+ +G i+l ++     +        a +p+++gkG++++ l+a++       g++   ++++  +++ + ++ ek GF+
      CTQ29180.1  57 VFVLRDKfGEALGDIGLRISPknphE---AdvgYALLPQAQGKGYASEALRAVCeygfttLGVQ-AiNAWVlgENRGSSRLLEKQGFV 140
                     78887779999999999999886433...235699****************8434233333333.12333334333677899999998 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   9.1e-06     0.027      89     153 ..      93     158 ..      65     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 9.1e-06
  Acetyltransf_4  89 nnkeglgrelidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiDm 153
                     ++ +g+++e + a+ ++     +++ ++a +  +n  s  ++++ GF  ++ ++k++  ng  +D 
      CTQ29180.1  93 AQGKGYASEALRAVCEYGfTTLGVQAINAWVLGENRGSSRLLEKQGFVRTQVLEKAYHLNGVDYDD 158
                     6778999995555555544*******************************************9996 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.1e-05     0.062      29      79 ..      89     141 ..      85     149 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.1e-05
                 E-GGG-SSSHHHHHHHHHHH.HHHHS-S-.EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  29 vlpehrrrGlgsrlvkalak.eiaergkt.vllvvvasNtpsirlyeklGfek 79 
                 +lp+++++G++s   +a+ + +  + g + + ++v  +N  s+rl+ek Gf  
  CTQ29180.1  89 LLPQAQGKGYASEALRAVCEyGFTTLGVQaINAWVLGENRGSSRLLEKQGFVR 141
                 689**************986266778866156788889999*********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1429.63
//
Query:       CTQ29181.1  [L=257]
Description: histidine/lysine/arginine/ornithine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-33  115.6   0.1    3.3e-33  115.1   0.1    1.2  1  ABC_tran     ABC transporter
    4.6e-12   46.4   0.6    3.3e-06   27.2   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    6.5e-08   32.3   0.4      2e-07   30.7   0.4    1.7  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00035   20.4   0.0      0.016   14.9   0.0    2.1  2  AAA_15       AAA ATPase domain
    0.00058   19.5   0.1     0.0011   18.7   0.1    1.4  1  AAA_29       P-loop containing region of AAA domain
     0.0029   16.5   0.1       0.74    8.5   0.0    2.4  2  ABC_ATPase   Predicted ATPase of the ABC class
     0.0031   16.2   0.0       0.37    9.4   0.0    2.0  2  AAA_13       AAA domain
     0.0079   16.6   0.2      0.015   15.7   0.2    1.7  1  AAA_16       AAA ATPase domain
     0.0091   16.2   0.0      0.036   14.2   0.0    2.0  1  AAA_33       AAA domain
  ------ inclusion threshold ------
      0.013   16.0   0.1      0.026   15.0   0.1    1.4  1  AAA_23       AAA domain
      0.018   14.2   0.0       0.02   14.1   0.0    1.2  1  G-alpha      G-protein alpha subunit
      0.025   14.3   0.0      0.041   13.6   0.0    1.4  1  PRK          Phosphoribulokinase / Uridine kinase family
      0.057   13.3   0.1       0.12   12.3   0.1    1.6  1  RsgA_GTPase  RsgA GTPase
      0.086   12.5   0.0        0.2   11.3   0.0    1.7  2  AAA_24       AAA domain
      0.098   12.6   0.0       0.38   10.7   0.0    2.0  3  NACHT        NACHT domain
       0.14   12.4   0.5       0.73   10.1   0.1    2.0  2  AAA_22       AAA domain
       0.18   11.8   0.7       0.47   10.5   0.7    1.8  1  DUF87        Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.1   3.1e-36   3.3e-33       1     137 []      21     181 ..      21     181 .. 0.90

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 3.1e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.............B-HHHCCHCEEEE-SS--S-TTSBHHHH....... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.............qeleslrkeigvlpqepqlfpeltvren....... 79 
                 lk vsl+ k+g ++ i+G++G+GKSt+l+++  l+kp eG+i + g+++               ++l+ lr ++ +++q+ +l++++tv en       
  CTQ29181.1  21 LKGVSLQAKAGDVISIIGSSGSGKSTFLRCINFLEKPSEGTIVVSGQNIGLvrdkdgqlkvadkNQLRLLRTRLTMVFQHFNLWSHMTVLENvmeapiq 119
                 799***************************************999999988888999999999999********************************* PP

                 .......HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .......esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                        e++e++ k+l+k+g++e   + + + p +LSgGq+qrv++aral+ +p++ll+DEpt+
  CTQ29181.1 120 vlglskqEARERAVKYLAKVGIDE---RQQAKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTS 181
                 ***965555555666666666555...6666789*****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   3.7e-06    0.0039       3      22 ..      35      54 ..      33      77 .. 0.83
   2 !   27.2   0.0   3.1e-09   3.3e-06     235     297 ..     151     210 ..     141     214 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.7e-06
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                 +iG  gsGKS++L+++ +l
  CTQ29181.1 35 SIIGSSGSGKSTFLRCINFL 54
                59*****************9 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 3.1e-09
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  +lS G+++   ++ al+  +    +ll+DEp + L+P+l+ ++l+++ +l+++g   +++TH
  CTQ29181.1 151 VHLSGGQQQRVSIARALAMEP---EVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 210
                 678888888877777777777...9***********************9999999999***** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.4   1.9e-10     2e-07      26     207 ..      33     220 ..      12     231 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.9e-10
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--........BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk........skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingk 116
                 + +i+G+ GSGKs +l  i F+   ++ + + s +   l+           k++ ++ + +++++f++ +       +++++  +v++   +   + ++
  CTQ29181.1  33 VISIIGSSGSGKSTFLRCINFLEKPSEGTIVVSGQNIGLVRDkdgqlkvaDKNQLRLLRTRLTMVFQHFNLW-----SHMTVLENVMEAPIQVLGLSKQ 126
                 678******************877667766777777777776544444434666677777777777777766.....6677888888888888888888 PP

                 EE-HHHHHHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SC CS
                 xxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
       SMC_N 117 evtkkevsellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadk 207
                 e++++ v+  l+++gi++         LSgG+++ v++a  +A++   p+ + l+De  +aLD + v +v +++++  ++   ++v++++ ++ +++++
  CTQ29181.1 127 EARERAVK-YLAKVGIDERqqakypvHLSGGQQQRVSIARALAME---PE-VLLFDEPTSALDPELVGEVLRIMQQLAEEgKTMVVVTHEMGFARHVSS 220
                 88888775.67889998888888888*************999875...55.569*********************999994566777887777666544 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.5e-05     0.016      23      65 ..      32      69 ..      21     149 .. 0.73
   2 ?    4.1   0.0     0.029        30     324     364 ..     171     210 ..     116     215 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-05
      AAA_15 23 eeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedl 65
                + +  +iG  +sGKS++l+ ++++ + +    + +i++  +++
  CTQ29181.1 32 D-VISIIGSSGSGKSTFLRCINFLEKPS----EGTIVVSGQNI 69
                3.889*****************999988....33333333333 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.029
      AAA_15 324 nvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 + +ll++EP   L p++  ++ + ++ la+++k   ++ TH
  CTQ29181.1 171 PEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTH 210
                 5789****************************9.6777788 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1     1e-06    0.0011      16      45 ..      25      54 ..      17      62 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1e-06
      AAA_29 16 tieidlkgatlltGpsGsGKSTllDAiqal 45
                +++ +  +++ ++G sGsGKST+l  i++l
  CTQ29181.1 25 SLQAKAGDVISIIGSSGSGKSTFLRCINFL 54
                55666455999************9777665 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0053       5.6     238     265 ..      22      52 ..       5      55 .. 0.80
   2 !    8.5   0.0   0.00071      0.74     324     353 ..     154     183 ..     149     229 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0053
                 EEEEE..-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 238 sGmgi..pkG.vtlIvGggfhGKsTLLeAle 265
                 +G+ +  + G v+ I+G+   GKsT L+ ++
  CTQ29181.1  22 KGVSLqaKAGdVISIIGSSGSGKSTFLRCIN 52 
                 66655114568****************9985 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00071
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-H CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAt 353
                 SG   q ++i++al ++ ++lL+DE tsA 
  CTQ29181.1 154 SGGQQQRVSIARALAMEPEVLLFDEPTSAL 183
                 89999***********************95 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0073       7.7      21      95 ..      36     129 ..      33     149 .. 0.59
   2 !    9.4   0.0   0.00035      0.37     526     580 ..     170     221 ..     159     237 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0073
      AAA_13  21 iYGwNGaGKTtLSrllrslelgetepkfangsi.............eitnge........eldirVfNrdFveenls..eqgelkpvftLGeesiekq 95 
                 i G+ G+GK+t+ r ++ le+ +  +   +g+              +    +           ++Vf +    +++   e+   +p+ +LG ++ e++
  CTQ29181.1  36 IIGSSGSGKSTFLRCINFLEKPSEGTIVVSGQNiglvrdkdgqlkvA----DknqlrllrTRLTMVFQHFNLWSHMTvlENVMEAPIQVLGLSKQEAR 129
                 56999**************9877666555553345555555544320....12223333344445553222233333434455566666666666655 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00035
      AAA_13 526 kdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkkn 580
                 + ++  +D P S LD + +  v   +++ +   ++ k + + TH + f + v+ +
  CTQ29181.1 170 EPEVLLFDEPTSALDPELVGEVLRIMQQLA---EEGKTMVVVTHEMGFARHVSSH 221
                 78899************************9...9****************99875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   1.5e-05     0.015      24      63 ..      31      71 ..      18     224 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.5e-05
      AAA_16 24 pelvllsGesGvGKsslvrellralekd..ggiflrgkcdql 63
                + ++ ++G sG+GKs+ +r++   lek   g i+++g++  l
  CTQ29181.1 31 GDVISIIGSSGSGKSTFLRCIN-FLEKPseGTIVVSGQNIGL 71
                36899****************9.7777765577777776655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   3.5e-05     0.036       1      33 [.      33     128 ..      33     218 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.5e-05
      AAA_33   1 lvllvGlpGsGKstlaerl..lkklg..avllssdt...........................................................l 33 
                 ++ ++G +GsGKst+++ +  l+k    ++++s  +                                                           +
  CTQ29181.1  33 VISIIGSSGSGKSTFLRCInfLEKPSegTIVVSGQNiglvrdkdgqlkvadknqlrllrtrltmvfqhfnlwshmtvlenvmeapiqvlglskqeA 128
                 67799***********96544544445666666666676666666666666666666555555444444444444444444444444444444441 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   2.5e-05     0.026      21      41 ..      33      53 ..      19      54 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.5e-05
      AAA_23 21 ltlItGpNGaGKTTildAikl 41
                +  I+G  G+GK+T+l++i +
  CTQ29181.1 33 VISIIGSSGSGKSTFLRCINF 53
                5679***************87 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.8e-05      0.02      26      51 ..      34      72 ..      17     199 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.8e-05
                EEEEESTTSSHHHHHHHHHHHCS--.............- CS
     G-alpha 26 llllGqseSGKsTilkqlkllykkg.............f 51
                + ++G+s+SGKsT+l+ + +l+k++             +
  CTQ29181.1 34 ISIIGSSGSGKSTFLRCINFLEKPSegtivvsgqniglV 72
                7789*****************999866666444444442 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.9e-05     0.041       1      20 [.      33      52 ..      33      88 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.9e-05
         PRK  1 vIgvagsSGaGkttvarkle 20
                vI++ gsSG+Gk+t+ r ++
  CTQ29181.1 33 VISIIGSSGSGKSTFLRCIN 52
                8**************99875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00011      0.12      98     120 ..      30      52 ..       5      78 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
                  TTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinall 120
                  +++++ ++G+SG GKSt++  ++
   CTQ29181.1  30 AGDVISIIGSSGSGKSTFLRCIN 52 
                  3488999***********98765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019       0.2       4      23 ..      33      54 ..      30     134 .. 0.82
   2 ?   -2.1   0.0       2.5   2.6e+03     110     131 ..     190     211 ..     186     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00019
      AAA_24  4 kiliyGpsgiGKTtlakel..g 23
                 i i+G+sg+GK+t+++ +   
  CTQ29181.1 33 VISIIGSSGSGKSTFLRCInfL 54
                5789************988551 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.5
      AAA_24 110 efrrllkklqelrknvifiahe 131
                 e+ r++++l e +k+ +++ he
  CTQ29181.1 190 EVLRIMQQLAEEGKTMVVVTHE 211
                 6788888888888888888876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00036      0.38       2      20 ..      33      51 ..      32      58 .. 0.88
   2 ?   -2.6   0.0       4.4   4.6e+03     139     164 ..     114     137 ..     103     138 .. 0.74
   3 ?   -3.1   0.0       6.2   6.5e+03      25      49 ..     215     234 ..     201     247 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00036
                CEEEEC-TTTCHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkl 20
                ++ + G +GsGK+t+l+ +
  CTQ29181.1 33 VISIIGSSGSGKSTFLRCI 51
                7889************977 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.4
                 SSCE..EEEE--TCCHHHHHHHHCTT CS
       NACHT 139 leeaivlevegfsesrrkqlvrkyfs 164
                 +e +  ++v g+s++++++ + ky++
  CTQ29181.1 114 MEAP--IQVLGLSKQEARERAVKYLA 137
                 4555..89999999999988888775 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 6.2
                 CTS-SCCCC-SEEEEEETTTTTTS- CS
       NACHT  25 aegklpqgafklvFflslrelsrsg 49 
                 a+        ++v+fl++++++++g
  CTQ29181.1 215 ARHV-----SSHVIFLHQGKIEEEG 234
                 3333.....3567777777766655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1    0.0007      0.73       6      24 ..      32      50 ..      28      62 .. 0.86
   2 ?   -0.5   0.0       1.3   1.3e+03      91     111 ..     167     190 ..     120     216 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0007
      AAA_22  6 gilvvtGesGtGKTtllrr 24
                 ++ ++G sG+GK+t lr 
  CTQ29181.1 32 DVISIIGSSGSGKSTFLRC 50
                5799***********9985 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.3
      AAA_22  91 v...ielliiDEaqh.lrseealee 111
                     +e+l+ DE    l  +e++ e
  CTQ29181.1 167 LamePEVLLFDEPTSaL-DPELVGE 190
                 13345555555544444.3333333 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.7   0.00044      0.47      27      43 ..      35      51 ..      32     197 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00044
       DUF87 27 AilgsTGsGKSntvavL 43
                 i+gs+GsGKS++ + +
  CTQ29181.1 35 SIIGSSGSGKSTFLRCI 51
                79***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      717  (0.0399911); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.36
# Mc/sec: 2129.14
//
Query:       CTQ29182.1  [L=238]
Description: histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-13   50.9  15.1      2e-13   50.5  15.1    1.3  1  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
       0.29   10.7   4.3      0.036   13.6   0.5    1.6  2  Stevor        Subtelomeric Variable Open Reading frame
        2.9    8.4  12.3       0.64   10.5   0.9    2.5  2  FtsX          FtsX-like permease family


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5  15.1   3.4e-17     2e-13       1     178 [.      37     220 ..      20     230 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 3.4e-17
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf.........vilsilghlilp.viillllsaapyvrlirraalrslpkdlv 84 
                   g +l++++a   +++nk+++  +  ++++++++P +v +++++             +l+++  + l   +++l+l + +y++ i+++a+rs+p + +
    CTQ29182.1  37 GGILAVFLAigrVSSNKFIQFPIWLFTYIFRGTPLYVQLLVFYSGMytleivkgtELLNAFFRSGLNcTVLALTLNTCAYTTEIFAGAIRSVPAGEI 133
                   557889999****************************8888776667889999995555566555555***************************** PP

  BPD_transp_1  85 eaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrl 178
                   eaara+G s  +++r ++lP+al+ +++   + ++++l  ++l+ + +    + +ll  a  ++  ++     + a++ia +l ++++++l  l
    CTQ29182.1 134 EAARAYGFSSVKLYRCIILPSALRIALPAYSNEVILMLHSTALAFTAT----VPDLLKIARDINSATYQP---FTAFGIAAVLYLIISYVLISL 220
                   **********************************99998888777777....666665555555555333...222222222222222222222 PP

>> Stevor  Subtelomeric Variable Open Reading frame
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2      0.88   5.2e+03     238     266 ..      25      53 ..      19      54 .. 0.58
   2 ?   13.6   0.5     6e-06     0.036     200     255 ..     171     222 ..      94     234 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.88
      Stevor 238 iaalvllilavvl.iiLYiwlyrRRKnSwk 266
                 i+ l lli +vv+  iL ++l   R +S k
  CTQ29182.1  25 IT-LWLLISSVVMgGILAVFLAIGRVSSNK 53 
                 33.345555555525888888877777766 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6e-06
      Stevor 200 fsesslesalkaavsaaaasdlagtaasaassafepygiaalvllilavvliiLYi 255
                 +++++l+     ++++  + ++a  + sa+ + f+++giaa++ li++ vli L+ 
  CTQ29182.1 171 LHSTALA----FTATVPDLLKIARDINSATYQPFTAFGIAAVLYLIISYVLISLFR 222
                 4333333....3455555566666777888888999****************9984 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   4.6     0.039   2.3e+02      20      80 ..      12      72 ..       9      84 .. 0.81
   2 ?   10.5   0.9   0.00011      0.64       3      94 ..     132     224 ..     130     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.039
        FtsX 20 lllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivllllla 80
                ll+t +  +t va+ + l++++++   + +v+l++   s+ k+   +i++++ i+ ++ l+
  CTQ29182.1 12 LLWTDGYRFTGVAITLWLLISSVVMGGILAVFLAIGRVSSNKFIQFPIWLFTYIFRGTPLY 72
                6889999999999999999999999999999999988888888888888888777665555 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00011
        FtsX   3 eigilralGmkkkqvlllllteill.itlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskilkk 94 
                 ei   ra G+++ ++++ +++ ++l i+l+a+   ++l l  + l ++     + +++ +i+  + + +++++++ +l+l+++++ is ++k 
  CTQ29182.1 132 EIEAARAYGFSSVKLYRCIILPSALrIALPAYSNEVILMLHSTALAFTATVPDLLKIARDINSATYQPFTAFGIAAVLYLIISYVLISLFRKA 224
                 88999999****999999888655428888888888886666666555555555568888888888888888888888888888899888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 2061.03
//
Query:       CTQ29183.1  [L=228]
Description: histidine/lysine/arginine/ornithine transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-23   82.9  11.6    2.9e-23   82.5  11.6    1.1  1  BPD_transp_1    Binding-protein-dependent transport system in
  ------ inclusion threshold ------
       0.12   11.6   0.0       0.12   11.6   0.0    2.5  3  MFS_Mycoplasma  Mycoplasma MFS transporter
        3.5    7.8   7.1       0.68   10.1   0.1    2.4  2  DUF872          Eukaryotic protein of unknown function (DUF87


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5  11.6   4.9e-27   2.9e-23       3     184 ..      29     220 ..      23     221 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 4.9e-27
  BPD_transp_1   3 llGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf...........vilsilghlilpviillllsaapyvrlirraalrslpkdlve 85 
                   l+G+  a   l++n++l  ++ +++ +++++P +vl++l+++ +            + +   + ++++ii+l + +++y++ ++r+a  ++pk+++e
    CTQ29183.1  29 LIGLAGAgakLSSNRPLALVFEGYTTLIRGVPDLVLMLLIFYGLqialnsvtdalGMAQFDIDPMIAGIITLGFIYGAYFTETFRGAYLAVPKGHIE 125
                   5555555778*****************************99999********995444444599999****************************** PP

  BPD_transp_1  86 aaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldpr 182
                   aa+a G s  q+fr++++P++++++++g+++++  +l++++l+++lg    l +++  ++l+   ++  +  ++++++++l++++v++ +  ll++r
    CTQ29183.1 126 AATAFGFSGGQTFRRILFPAMMRYALPGIGNNWQVILKATALVSLLG----LEDVVKATQLAGKSTWQPFYFAIVCGLIYLVFTTVSNGVLLLLERR 218
                   ***********************************************....***************999***************************9 PP

  BPD_transp_1 183 vr 184
                    +
    CTQ29183.1 219 YT 220
                   76 PP

>> MFS_Mycoplasma  Mycoplasma MFS transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   1.3      0.43   2.5e+03     223     223 ..      59      59 ..      16     109 .. 0.56
   2 ?   11.6   0.0     2e-05      0.12       4      52 ..     121     170 ..     119     177 .. 0.86
   3 ?   -1.8   0.1      0.25   1.5e+03     251     265 ..     193     207 ..     185     214 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.43
  MFS_Mycoplasma 223 l 223
                     +
      CTQ29183.1  59 V 59 
                     2 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2e-05
  MFS_Mycoplasma   4 ksklsaintfGfniGaiialvfFlisisvkeaat.knWviiltvlillil 52 
                     k+ + a++ fGf  G  +  ++F   +     ++ +nW++il +  l+ l
      CTQ29183.1 121 KGHIEAATAFGFSGGQTFRRILFPAMMRYALPGIgNNWQVILKATALVSL 170
                     788999*****************99999988877256*****99888755 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.25
  MFS_Mycoplasma 251 fgliWGigYvlytiv 265
                     f+++ G+ Y+++t v
      CTQ29183.1 193 FAIVCGLIYLVFTTV 207
                     667777777777754 PP

>> DUF872  Eukaryotic protein of unknown function (DUF872)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.2      0.11   6.3e+02      57      94 ..      65     109 ..      61     123 .. 0.69
   2 ?   10.1   0.1   0.00011      0.68      35      87 ..     150     202 ..     131     212 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.11
      DUF872  57 lvLlllgvvilvep.seGvssavf....lvlGlll..fiPGvYhv 94 
                 ++L++ g+ i+++  ++    a f    +++G+++  fi G+Y +
  CTQ29183.1  65 MLLIFYGLQIALNSvTDALGMAQFdidpMIAGIITlgFIYGAYFT 109
                 568888888888874333444445568899999875578888865 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00011
      DUF872  35 khPkvkknrkvvlaallLlllGlvLlllgvvilvepseGvssavf....lvlGlllf 87 
                   P + +n++v+l a++L+     Ll l  v+++++ +G+s++      +v Gl+ +
  CTQ29183.1 150 ALPGIGNNWQVILKATALVS----LLGLEDVVKATQLAGKSTWQPfyfaIVCGLIYL 202
                 569999************74....677777888888888887753122445566555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1956.48
//
Query:       CTQ29184.1  [L=260]
Description: histidine/lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-64  215.2   0.1    8.7e-64  215.0   0.1    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    3.6e-05   23.9   0.1      0.002   18.3   0.1    2.3  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine
    0.00055   19.9   0.0      0.007   16.3   0.0    2.0  2  NMT1             NMT1/THI5 like
  ------ inclusion threshold ------
       0.17   11.4   0.0        3.5    7.1   0.0    2.0  2  YhfZ_C           YhfZ C-terminal domain


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.0   0.1   1.9e-67   8.7e-64       1     224 [.      28     254 ..      28     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 215.0 bits;  conditional E-value: 1.9e-67
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 +r+g+d++y+Pf+ k+++gel+Gfd+dlak+++kr++ +++fv+++ d+lip+lk++k+D+++++++it++R+++++F++  + a  +l+v+k++    
  CTQ29184.1  28 IRIGTDPTYAPFESKNAQGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVKKGS-P-- 123
                 79*****************************************99***********************************************875.3.. PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC.TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE......ECGGCECEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkk.gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv......eeplsseeyaiav 191
                    ++la Lkgk+vgv +g+t+e++ +e+++  g+eiv+++ +++ + +L +gr+da++ d++++ +   k+p +k ++       +e+l++ + ++++
  CTQ29184.1 124 -VTPDLATLKGKRVGVLQGTTQETYGNEHWAPkGIEIVSYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPIGKDYQFggpsikDEKLFGVGTGMGL 221
                 .455677******************77766666**********************************************9******************* PP

                 ETTTHHHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 192 rkgdseLrkainkalaelkadgtlakisekWfg 224
                 rk+d+eLr+a+nka+ae+++dgt++k+++k+f+
  CTQ29184.1 222 RKEDNELREALNKAFAEMRKDGTYDKLAKKYFD 254
                 *******************************96 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   4.6e-07     0.002      26     113 ..      46     120 ..      27     122 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.6e-07
                      GGEESHHHHHHHHHHHHHT-EEEEEE-TT-----BETTTTEB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-EEEEEES CS
  Lig_chan-Glu_bd  26 eryeGfcidLlkelakklgfkYelklvedgkyGskkekkkewnGmigellekkadlavapltitaeReevvdFtkpfmelgisilikk 113
                       ++ Gf idL kel k+++ + ++ ++               + +i +l +kk+d ++++l+it++R++ + Ft+  +     +++kk
       CTQ29184.1  46 GELVGFDIDLAKELCKRINTQCTFVEN-------------PLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAADSRLVVKK 120
                      456777777777777777777766542.............357899*****************************9999998888887 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.053   2.4e+02     120     148 ..      65      93 ..      55     113 .. 0.84
   2 !   16.3   0.0   1.6e-06     0.007      75     145 ..     114     181 ..      95     190 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.053
                 GG-EEEE-.TT-HHHHHHCTSSSEEECEE CS
        NMT1 120 sdvtlvnvggtslakalltgkvDaaiggy 148
                  ++t+v++  + l+++l ++k+Da++  +
  CTQ29184.1  65 TQCTFVENPLDALIPSLKAKKIDAIMSSL 93 
                 57899999999*************98554 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.6e-06
                 EEEEEECCC-.-SSGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-..TT-HHHHHHCTSSSEEE CS
        NMT1  75 sglivlkdsg.ikspkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvg.gtslakalltgkvDaai 145
                 s l+v+k+s+ + +++ LkGkr+g+ ++  +++  ++ +a +g+     ++v+++ +++ +++l +g++Daa+
  CTQ29184.1 114 SRLVVKKGSPvTPDLATLKGKRVGVLQGTTQETYGNEHWAPKGI-----EIVSYQgQDNIYSDLTAGRIDAAF 181
                 57899*****899**************87777777777666666.....55555404456669********97 PP

>> YhfZ_C  YhfZ C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0036        16     136     166 ..      64      94 ..      53     104 .. 0.77
   2 ?    7.1   0.0   0.00077       3.5      65     161 ..      87     180 ..      80     189 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0036
      YhfZ_C 136 gkdvelveisynqllelllkgkiDavvWnld 166
                 +++ ++ve + + l+ +l+++kiDa+  +l+
  CTQ29184.1  64 NTQCTFVENPLDALIPSLKAKKIDAIMSSLS 94 
                 45899********************987766 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00077
      YhfZ_C  65 dfavvSrlaAeqaleegkeveialelGpetYvsahvlllrdgekseikd....glrvgvDsnSlDqkilteaifegkdvelveisyn.qllelllkgki 158
                 d a++S l+  ++ ++       + ++++ Y ++ +l++++g+  + +     g rvgv  + + q++  ++  + k +e+v+ + + ++   l++g+i
  CTQ29184.1  87 D-AIMSSLSITEKRQQ------EIAFTDKLYAADSRLVVKKGSPVTPDLatlkGKRVGVL-QGTTQETYGNEHWAPKGIEIVSYQGQdNIYSDLTAGRI 177
                 5.56677776666554......4679**************9986544323344******5.556688889999999*******9976268889****** PP

      YhfZ_C 159 Dav 161
                 Da+
  CTQ29184.1 178 DAA 180
                 *97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 2203.75
//
Query:       CTQ29185.1  [L=260]
Description: lysine/arginine/ornithine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-61  207.2   0.4    2.4e-61  207.0   0.4    1.0  1  SBP_bac_3        Bacterial extracellular solute-binding prote
    0.00059   20.0   0.0      0.011   15.9   0.0    2.4  1  Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine
    0.00065   19.7   0.0      0.019   14.9   0.0    2.1  2  NMT1             NMT1/THI5 like


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.0   0.4     4e-65   2.4e-61       1     224 [.      28     254 ..      28     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 207.0 bits;  conditional E-value: 4e-65
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 +r+g+da+y+Pfs kd++g ++Gfd+dl ++++ r++vk+++v  ++d+lip+lk++k+D++i++++it++R+++++Fs+  + a  +l++ k++    
  CTQ29185.1  28 IRIGTDATYAPFSSKDAKGDFVGFDIDLGNELCSRIKVKCTWVGSDFDSLIPSLKAKKIDAIISSLSITEKRQQEIAFSDKLYAADSRLIAAKGS-PIQ 125
                 79*****************************************77***********************************************875.566 PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC.TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE......ECGGCECEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkk.gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv......eeplsseeyaiav 191
                 ++++    Lkgk vgv +gst+e++++  +++ g+++v +++++  + +L++gr da++ d++++ +   k+p++k ++       ++++++++ +i++
  CTQ29185.1 126 PTLE---ALKGKHVGVLQGSTQEAYANDRWRSqGVDVVAYQNQDLIYSDLAAGRLDAALQDEVAASEGFLKQPAGKDFAFagpsvkDKKYFGDGTGIGL 221
                 6666...*********************99999********************************9999999999998888****************** PP

                 ETTTHHHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 192 rkgdseLrkainkalaelkadgtlakisekWfg 224
                 rk+d eL++a++kal e+++dgt++k+++k+f+
  CTQ29185.1 222 RKDDAELKAAFDKALGEMRKDGTYDKMAKKYFD 254
                 *******************************96 PP

>> Lig_chan-Glu_bd  Ligated ion channel L-glutamate- and glycine-binding site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.8e-06     0.011      66     107 ..      73     114 ..      27     122 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.8e-06
                      EB-HHHHHHHTTS-SEE-SS-B--HHHHTTSEEESESEEE-E CS
  Lig_chan-Glu_bd  66 ewnGmigellekkadlavapltitaeReevvdFtkpfmelgi 107
                        + +i +l +kk+d ++++l+it++R++ + F++  +    
       CTQ29185.1  73 DFDSLIPSLKAKKIDAIISSLSITEKRQQEIAFSDKLYAADS 114
                      467799999*************************98776655 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.022   1.3e+02     121     148 ..      66      93 ..      62     107 .. 0.83
   2 !   14.9   0.0   3.2e-06     0.019      76     145 ..     115     181 ..     109     191 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.022
                 G-EEEE-.TT-HHHHHHCTSSSEEECEE CS
        NMT1 121 dvtlvnvggtslakalltgkvDaaiggy 148
                 ++t v  +++sl+++l ++k+Da+i  +
  CTQ29185.1  66 KCTWVGSDFDSLIPSLKAKKIDAIISSL 93 
                 678889999***************9654 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3.2e-06
                 EEEEECCC--S.SGGGGTTSEEEE-S-TTHHHHHHHHHHHTT--GGG-EEEE-.TT-HHHHHHCTSSSEEE CS
        NMT1  76 glivlkdsgik.spkDLkGkrigyvgspfekallkallakdggdpsdvtlvnvggtslakalltgkvDaai 145
                  li+ k+s+i+ +++ LkGk +g+ +++ ++a  ++ ++++g+d  ++++++      +++l++g+ Daa+
  CTQ29185.1 115 RLIAAKGSPIQpTLEALKGKHVGVLQGSTQEAYANDRWRSQGVDVVAYQNQDL-I---YSDLAAGRLDAAL 181
                 6788899996548999***************************9999999888.3...3379999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1983.13
//
Query:       CTQ29186.1  [L=189]
Description: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-24   84.3   0.0    9.6e-24   83.9   0.0    1.1  1  Flavoprotein     Flavoprotein
  ------ inclusion threshold ------
      0.047   13.9   0.0        0.1   12.8   0.0    1.6  1  CTP_transf_like  Cytidylyltransferase-like
      0.094   12.7   0.1       0.15   12.0   0.1    1.3  1  DUF3018          Protein  of unknown function (DUF3018)
       0.14   12.6   0.0       0.22   12.0   0.0    1.3  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   2.1e-27   9.6e-24       1     125 [.       2     165 ..       2     174 .. 0.85

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 2.1e-27
                   EEEEEEE-SSCGGGCHHHHHHHHHH.TTEEEEEEESCHHHHCCHHG.GS..........TCSSHHHHHHCT...............TESEEEEEEEE CS
  Flavoprotein   1 kkillgiTGsvaaikalellekLkk.egievqvvltkaAkkfiske.klklaa......redpilhielrr...............wadllviaPas 74 
                   k++++gi+G+++ai+++++l+ L++  +ie++++l++aA++++  e ++++ +                                 ++ ++vi+P+s
    CTQ29186.1   2 KRLIIGISGASGAIYGVRMLQVLRDvPDIETHLILSQAARQTLAMEtDYSVREvqaladV----------VhdardiaasissgsfKTAGMVILPCS 88 
                   689**********************99*****************9965555444433331..........0333455667778888*********** PP

                   HHHHHHHHTT--SSHH...........................HHHHHT.HCCTTEEEEE.--HHCCTCSTCHHHHHHH CS
  Flavoprotein  75 antlakianGiadnll...........................tlilra.takkpiliaPamnpamyenpqtlknlekl 125
                   ++tl+ i++ ++d ll                           +  l++ +a+ +++i+P + pa+y++pq+l+++ + 
    CTQ29186.1  89 MKTLSGIVHSYTDGLLtraadvvlkerrplvlcvretpfhlghL-RLLVqAAELGAVIMP-PVPAFYHRPQSLDDVINQ 165
                   ****************************************9953.44345899*******.**************9876 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.3e-05       0.1       8      26 ..     126     144 ..     125     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.3e-05
                      T--HHHHHHHHHHHHHSSE CS
  CTP_transf_like   8 piHlGHlrlleqakkllee 26 
                      p+HlGHlrll qa++l+  
       CTQ29186.1 126 PFHLGHLRLLVQAAELGAV 144
                      9**************9874 PP

>> DUF3018  Protein  of unknown function (DUF3018)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.3e-05      0.15      23      62 ..      27      66 ..      16      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.3e-05
     DUF3018 23 VPDtrrpefaeeirrqsalvaqdpeeaellafldeaadle 62
                VPD+ +  + +++ rq +++++d + +e++a+ d ++d  
  CTQ29186.1 27 VPDIETHLILSQAARQTLAMETDYSVREVQALADVVHDAR 66
                9********************************9999876 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.9e-05      0.22       2      46 ..       6      51 ..       5      76 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.9e-05
                    EEEETTTSHH.HHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSG CS
  Semialdhyde_dh  2 vaivGatGyv.GqellrlLeehpevelvvllsssrsaGkklaeavk 46
                    ++i Ga+G++ G ++l++L++ p++e + +ls++  +  +++  ++
      CTQ29186.1  6 IGISGASGAIyGVRMLQVLRDVPDIETHLILSQAARQTLAMETDYS 51
                    78999**9866*******************9999866666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1498.89
//
Query:       CTQ29187.1  [L=505]
Description: amidophosphoribosyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-16   58.8   0.0    1.5e-15   57.6   0.0    1.6  1  GATase_6      Glutamine amidotransferase domain
    3.6e-14   52.7   0.0    7.7e-14   51.7   0.0    1.6  1  GATase_7      Glutamine amidotransferase domain
    3.8e-08   33.0   0.0    7.4e-08   32.1   0.0    1.4  1  Pribosyltran  Phosphoribosyl transferase domain
    1.9e-05   23.7   0.0    9.1e-05   21.5   0.0    1.9  2  GATase_4      Glutamine amidotransferases class-II
  ------ inclusion threshold ------
       0.16   11.4   0.0       0.33   10.4   0.0    1.4  1  PRTase_2      Phosphoribosyl transferase


Domain annotation for each model (and alignments):
>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   4.1e-19   1.5e-15       9     125 ..      63     196 ..      52     210 .. 0.77

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 4.1e-19
    GATase_6   9 lvedevalaHvRlaivglaeeegaqPf.psedgrlllvhNGeiynykelreelpalkglafrsrsDtevllall.......eelG..........eevl 89 
                  ++++++++HvR  + g +  ++aqPf +++  +++l+hNG   n++elr++l ++k+++++++sD+e+ll+++       ++++          +++ 
  CTQ29187.1  63 RMQGNMGIGHVRYPTAGSSSASEAQPFyVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFaseldnfRHYPleadnifaaiAATN 161
                 345679*************99999***9999999**************************************888666666444466667776644444 PP

    GATase_6  90 erlrGmfafaiwdkrentlilardrlgvkplyyavd 125
                 + +rG++a +++    ++++  rd  g++pl+ +  
  CTQ29187.1 162 RLIRGAYACVAMI-IGHGMVAFRDPNGIRPLVLGKR 196
                 6788877775443.5556666699999999998876 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   2.1e-17   7.7e-14       8     122 ..      81     215 ..      72     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 2.1e-17
    GATase_7   8 dseagaQPmvssedgrlvivfnGeiyNykelreeLeak.ghrfrtksDtevllallea................ewgeealerlnGmfAfaiwdeeekr 89 
                  s+++aQP++ ++   +++++nG ++N +elr++L ++ + +++t+sD+e+ll+++++                + ++++ + ++G +A + +   +  
  CTQ29187.1  81 SSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEkRRHINTTSDSEILLNIFASeldnfrhypleadnifAAIAATNRLIRGAYACVAMIIGH-G 178
                 57899*****977777*******************87615688*************99*************999999999999******99998777.7 PP

    GATase_7  90 lllaRDrlGikPLyygedk....gdallfaSelkall 122
                 +++ RD+ Gi+PL +g+++     +++++aSe  al 
  CTQ29187.1 179 MVAFRDPNGIRPLVLGKRDvgdgRTEYMVASESVALD 215
                 9*****************9965444899****99985 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   2.1e-11   7.4e-08      21     121 ..     286     394 ..     271     402 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 2.1e-11
                   EEEEE.--GGGEEEEEEETTTHHHHHHHHHHSTT-EE.-EEEEEE-TTT--EE..............EE----TTSEEEEE-SEESSSHHHHHHHHH CS
  Pribosyltran  21 eilee.yngkpdvvvgiargGvpfakiladeLevpla.yvrkvkyrpdgseeaargssdes......rlledpagkkVliVDDildtGgTllaalel 109
                   +i +e  +  +dvv++i+  +  +a ++a+ L+ p+     k +y + +     +++   s       + +++++k Vl+VDD +  G+T + ++e 
    CTQ29187.1 286 KIAREwEDLDIDVVIPIPETSCDIALEIARILDKPYRqGFVKNRYVGRTFIMPGQQLRRKSvrrklnANRAEFRDKNVLLVDDSIVRGTTSEQIIEM 382
                   33344444889************************665888888888887766666666667789999***************************** PP

                   HHCC-BSEEEEE CS
  Pribosyltran 110 Lkekgpeevria 121
                    +e+g+++v +a
    CTQ29187.1 383 AREAGAKKVYLA 394
                   ********9877 PP

>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.5e-08   9.1e-05      69     166 ..      64     164 ..      39     193 .. 0.75
   2 ?   -0.8   0.0      0.15   5.6e+02     171     216 ..     360     405 ..     339     413 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.5e-08
    GATase_4  69 iksknvvaHiRkatqGevklenthpFvRelwgrewifAHnGdlke...ykpkl.egrfePvGsT.DsElafCelleelasrfekaepsaeeleralael 162
                 ++ ++ + H+R  t G+ + ++++pF  +     +++AHnG+l++   +++kl e++ + + +T DsE  + ++ +el++   + + +a+++++a+a+ 
  CTQ29187.1  64 MQGNMGIGHVRYPTAGSSSASEAQPFYVN-SPYGITLAHNGNLTNaheLRKKLfEEKRRHINTTsDSEILLNIFASELDNFR-HYPLEADNIFAAIAAT 160
                 788899********************865.456799*******763335555575566677766599999988888888766.4578888888888877 PP

    GATase_4 163 akei 166
                  + i
  CTQ29187.1 161 NRLI 164
                 6655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.15
    GATase_4 171 vfnlllsdgralfahastrLvyilRkaPfgeaelkdedlevdfeev 216
                   n+ll d   +   +s++++ + R+a  +++ l+ ++ e++f +v
  CTQ29187.1 360 DKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLASAAPEIRFPNV 405
                 569999999999999*******************999999999765 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   9.2e-05      0.33     117     154 ..     357     393 ..     345     403 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.2e-05
    PRTase_2 117 llaaakelvLvDDEistGktalnliralqeklprkryv 154
                  + ++k+++LvDD i  G+t  ++i+  +e+  +k y 
  CTQ29187.1 357 EF-RDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYL 393
                 34.46789******************999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3608.50
//
Query:       CTQ29188.1  [L=162]
Description: membrane protein required for colicin V production [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-38  130.9   9.0    3.9e-38  130.7   9.0    1.0  1  Colicin_V        Colicin V production protein
  ------ inclusion threshold ------
       0.11   12.6   4.6        1.3    9.2   0.2    2.6  3  Phage_holin_4_1  Bacteriophage holin family
       0.22   11.4   1.8       0.35   10.8   1.8    1.4  1  Rick_17kDa_Anti  Glycine zipper 2TM domain
       0.31   11.6   4.3       0.86   10.2   4.3    1.8  1  DUF1218          Protein of unknown function (DUF1218)
        9.2    6.0   6.8         15    5.4   2.8    2.5  2  SPC25            Microsomal signal peptidase 25 kDa subunit (


Domain annotation for each model (and alignments):
>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   9.0   1.1e-41   3.9e-38       1     140 [.       4     142 ..       4     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 130.7 bits;  conditional E-value: 1.1e-41
   Colicin_V   1 lDliillilllsallGlrrGfvrevlsllgwvvafvvasllypslaellaelilspalaaiiaflllfllvllivsllgallsklvsktglglldrllG 99 
                 +D++i+++l+ls+l++l+rGfvre+lsl+ w +af+vas++y +l+ +++  +++++++++ia+++lf+++l++++++++++++lv+ktgl+++dr+lG
  CTQ29188.1   4 IDYAIMAVLGLSCLVSLIRGFVREALSLVTWGCAFYVASHYYADLSVWFTG-FEDERVRNGIAIAALFIVTLIVGAIVNYVIGQLVEKTGLSGTDRVLG 101
                 7**************************************************.6********************************************** PP

   Colicin_V 100 aifGllkglllvv.llllllalvplpkvqewlqnSvlaplle 140
                  +fG+l+g+l++  +l++l +++ + k +  +++S+++p++ 
  CTQ29188.1 102 ICFGALRGVLIIAaILFFLDTFTGMAKSD-DWHQSQFIPYFT 142
                 *************7777777777777766.*********986 PP

>> Phage_holin_4_1  Bacteriophage holin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.61   2.2e+03      56      85 ..      11      42 ..       2      49 .. 0.50
   2 ?    4.7   0.3    0.0092        33      38      70 ..      55      87 ..      31      96 .. 0.85
   3 ?    9.2   0.2   0.00037       1.3       3      32 ..     100     129 ..      98     137 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.61
  Phage_holin_4_1 56 lvlvahllDvllgknle..tlrtlviifyian 85
                     ++ + +l++ + g   e  +l t+ + fy+a+
       CTQ29188.1 11 VLGLSCLVSLIRGFVREalSLVTWGCAFYVAS 42
                     33334443333333222323566666666665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0092
  Phage_holin_4_1 38 lsskkglkgiikkvlilllvlvahllDvllgkn 70
                     ++ +++++gi+  +l ++ ++v++++ +++g+ 
       CTQ29188.1 55 FEDERVRNGIAIAALFIVTLIVGAIVNYVIGQL 87
                     667788999999999999999999999999875 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00037
  Phage_holin_4_1   3 lsyllggvdklltallllmviDyltGllaa 32 
                      l+  +g +  +l++  +l+++D+ tG++++
       CTQ29188.1 100 LGICFGALRGVLIIAAILFFLDTFTGMAKS 129
                      67899**********************987 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.8   9.7e-05      0.35       4      36 ..      75     111 ..      72     116 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.7e-05
  Rick_17kDa_Anti   4 liGAaaGgvaGaaigg....gggrvlGavvGAaaGav 36 
                      ++GA++  v+G ++ +    g++rvlG+  GA+ G +
       CTQ29188.1  75 IVGAIVNYVIGQLVEKtglsGTDRVLGICFGALRGVL 111
                      89************555***************98866 PP

>> DUF1218  Protein of unknown function (DUF1218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.3   0.00024      0.86      32      90 ..      63     122 ..       7     123 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00024
     DUF1218  32 rtlavvlfvlswivfaiAvalllvGaavnaehtkenve...sCyvlkkgvFaaaavLalvav 90 
                  ++  +lf++++iv   A++ +++G  v++   + + +    C  + +gv+ +aa+L+++ +
  CTQ29188.1  63 GIAIAALFIVTLIV--GAIVNYVIGQLVEKTGLSGTDRvlgICFGALRGVLIIAAILFFLDT 122
                 33444444444443..467889999999998888766699*****************99865 PP

>> SPC25  Microsomal signal peptidase 25 kDa subunit (SPC25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   2.8    0.0041        15      32      83 ..      31      86 ..       3      99 .. 0.71
   2 ?    1.8   0.1     0.051   1.8e+02      37      67 ..     111     141 ..      96     152 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0041
       SPC25 32 lGylavaiaavaflydykv....eFeeskpvlaiavvlYfilsgiltlystfvekn 83
                l +  +a+ +++++y  +     +Fe+++    ia+++ fi++ i+ +++++v ++
  CTQ29188.1 31 LVTWGCAFYVASHYYADLSvwftGFEDERVRNGIAIAALFIVTLIVGAIVNYVIGQ 86
                44555677777777764444555888888888888888888888887777777665 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.051
       SPC25  37 vaiaavaflydykveFeeskpvlaiavvlYf 67 
                  +iaa++f++d +++  +s  +     + Yf
  CTQ29188.1 111 LIIAAILFFLDTFTGMAKSDDWHQSQFIPYF 141
                 5899999999999988888877777666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1321.33
//
Query:       CTQ29189.1  [L=229]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-10   40.2   0.0    4.8e-10   39.7   0.0    1.3  1  SPOR      Sporulation related domain


Domain annotation for each model (and alignments):
>> SPOR  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   2.7e-14   4.8e-10       2      74 ..     150     223 ..     149     225 .. 0.94

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 2.7e-14
                 TTBB--BS-EES-HHHHHHHHHHCCHHT--....EEECCSSSCEEEEESSBCTCCHHHHHHHHCHHHHTTS--B CS
        SPOR   2 sggytvQvgafsseanAerlaakLrakgfaaav.avvsgggglyrVrvGpfasreeAqaalkkLkaaagisafv 74 
                 ++ y vQ+ga+++ +  ++ + kLra gf++++ + +  +g+ +r++vGp as++  +  l  L++  g+s++v
  CTQ29189.1 150 GKAYVVQLGALKNADKVNEIVGKLRASGFKVYTsPSTPVQGKITRILVGPDASKDKLKGQLGDLQQISGLSGVV 223
                 689********************************************************999999667888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1705.09
//
Query:       CTQ29190.1  [L=422]
Description: bifunctional folylpolyglutamate synthase and dihydrofolate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-10   39.8   0.0    7.5e-10   39.1   0.0    1.3  1  Mur_ligase_M  Mur ligase middle domain
    4.8e-08   33.1   0.0    1.1e-07   32.0   0.0    1.6  1  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   8.3e-14   7.5e-10       1     106 [.      54     196 ..      54     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 8.3e-14
                   EESSS-HHHHHHHHHHHHHCTEEEEETTC.......................................SS-THHHHHHHHHHHHHTT-SEEEEE--H CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvg.......................................ttnneiglpktlaemekkeaeyavlEvss 58 
                   v+GtnGK Tt + ++ il +ag ++g+                                         t   e+g+ ++l  +++++ ++++lEv+ 
    CTQ29190.1  54 VAGTNGKGTTCRTLETILMAAGYKVGVYSsphlvrytervriqgaelpeaahtasfaeieaargdislT-YFEYGTLSALWLFKQAQLDVVILEVGL 149
                   89*******************77777777777***********************************65.5566777777788888*********** PP

                   CHHHCTTTCCHCBESEEEE---TSTTHHHH.SSHHHHHHHHHHHHHTSE CS
  Mur_ligase_M  59 hglgekrlegllkpdvavitnispdHldfh.gtlenyaeaKaelferlk 106
                      g     ++++ dvav+t+i  dH d +  ++e + ++Ka +f+  k
    CTQ29190.1 150 G--GRLDATNIVDADVAVVTSIALDHTDWLgPDRESIGREKAGIFRAGK 196
                   *..44444555*****************88689************8655 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.2e-11   1.1e-07       2      75 ..     287     353 ..     286     367 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1.2e-11
                   TTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEE CS
  Mur_ligase_C   2 kgRlevvgeadgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladsl 75 
                   +gR+++++   +++vi D ahnp+++  +   l+++a+++r+++v g + +  +++++    ++ la ++++ +
    CTQ29190.1 287 PGRFQIISD--APRVILDVAHNPHAAAYLAGRLKTLAKTGRVLAVIG-MLH--DKDIA--GTLANLAPEVDAWY 353
                   8*******9..99**********************************.777..35555..99999998865545 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3303.55
//
Query:       CTQ29191.1  [L=327]
Description: acetyl-CoA carboxylase, beta (carboxyltranferase) subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-17   60.9   0.1    1.7e-16   60.0   0.1    1.5  1  Carboxyl_trans  Carboxyl transferase domain
    9.8e-15   54.3   3.2    1.7e-14   53.6   3.2    1.4  1  zf-ACC          Acetyl-coA carboxylase zinc finger domain
  ------ inclusion threshold ------
      0.034   13.6   0.4        3.7    7.1   0.1    2.5  2  zf-ribbon_3     zinc-ribbon domain
      0.089   12.8   0.4       0.18   11.9   0.4    1.4  1  DZR             Double zinc ribbon
       0.12   12.5   1.2       0.32   11.1   1.2    1.7  1  Zn-ribbon_8     Zinc ribbon domain
       0.13   12.2   1.3       0.28   11.1   1.3    1.5  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain
       0.15   12.1   0.1       0.35   10.9   0.1    1.6  1  Ogr_Delta       Ogr/Delta-like zinc finger
       0.21   11.5   1.0       0.52   10.2   1.0    1.6  1  zf-FPG_IleRS    Zinc finger found in FPG and IleRS
          1    9.6   4.1       0.29   11.3   0.8    1.8  2  Auto_anti-p27   Sjogren's syndrome/scleroderma autoantigen 1 


Domain annotation for each model (and alignments):
>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.1   8.5e-20   1.7e-16      10     181 ..      78     260 ..      72     315 .. 0.79

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 8.5e-20
                     EEEEEHTTSGGGEBEHHHHHHHHHHHHHHH.............HHT..EEEEEEEESBETTEEHHHHTTEEEEESSTTSGGGCEEECHHHHHHHH CS
  Carboxyl_trans  10 areridllldpgsFgeledlffhrvtelgr.............kkklprdgvvtgsGaviGravevvaqdktvlggslgpakgekllkaqeeaik 91 
                     ar+r+  lld+gs +el  +++ +   + r             k+   +d++v   G+   + v+  a ++ ++ggs+g + g + ++a+e+a++
      CTQ29191.1  78 ARNRLHSLLDEGSLVELGSELEPKDVLKFRdskkykdrlasaqKETGEKDALVVMKGTLYAMPVVAAAFEFSFMGGSMGSVVGARFVRAVEQALE 172
                     566666666666666665555433211111111111122333355567899******************************************** PP

                     HTEEEEEEEEE-ESSSGHHSSHHHHHHHHHHHHHHHHHHH.CS-EEEEESSEEETH.HHHHHHHTSEEEEETTEEEEESSTHHHHHHHHSSC CS
  Carboxyl_trans  92 agepligindsgGaegriqegveslrgsGkifgenskasg.eIpqislvtgrcaGg.gaYlpalgdrvimveetskifltGpdvikkvlgre 181
                      ++pli +  sgGa  r+qe   sl +++k  ++ +k+++ ++p+is++t +++Gg  a  + lgd  i+  + + i+++Gp+vi++ +  e
      CTQ29191.1 173 DNCPLICFSASGGA--RMQEALMSLMQMAKTSAALAKMQErGLPYISVLTDPTMGGvSASFAMLGDLNIAEPK-ALIGFAGPRVIEQTVR-E 260
                     **************..**************************************9834566788999999888.***********98665.4 PP

>> zf-ACC  Acetyl-coA carboxylase zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   3.2   8.4e-18   1.7e-14       1      26 []      45      70 ..      45      70 .. 1.00

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 8.4e-18
      zf-ACC  1 WtKCpsCgemlykkeLernlyVCPkC 26
                WtKC+sCg++ly+ eLernl+VCPkC
  CTQ29191.1 45 WTKCDSCGQVLYRAELERNLEVCPKC 70
                ************************** PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0018       3.7      16      26 .]      45      55 ..      37      55 .. 0.78
   2 ?    4.4   0.0     0.014        27       4      11 ..      66      73 ..      64      80 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0018
  zf-ribbon_3 16 dnvCpyCGtkl 26
                 +++C +CG++l
   CTQ29191.1 45 WTKCDSCGQVL 55
                 78999999886 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.014
  zf-ribbon_3  4 rCPnCGap 11
                  CP+C+++
   CTQ29191.1 66 VCPKCDHH 73
                 59999885 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   8.9e-05      0.18      15      43 ..      48      79 ..      39      80 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.9e-05
         DZR 15 CseCgtklkavaa...edrCpsCgekvdpear 43
                C+ Cg+ l +++     ++Cp+C++ + + ar
  CTQ29191.1 48 CDSCGQVLYRAELernLEVCPKCDHHMRMSAR 79
                *******9744438999*******99887765 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.2   0.00016      0.32       7      36 ..      47      74 ..      46      76 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
  Zn-ribbon_8  7 rCeeCghefevlqsis.dapltaCPeCgsev 36
                 +C++Cg    vl ++  +++l++CP+C +++
   CTQ29191.1 47 KCDSCG---QVLYRAElERNLEVCPKCDHHM 74
                 7*****...56666677999999****8765 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.3   0.00014      0.28      30      56 ..      47      74 ..      46      76 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
  OrfB_Zn_ribbon 30 tCseCgsknke.alsgrtfkCpnCgfea 56
                    +C  Cg+++++ +l++++ +Cp+C +++
      CTQ29191.1 47 KCDSCGQVLYRaELERNLEVCPKCDHHM 74
                    8**********99***********9985 PP

>> Ogr_Delta  Ogr/Delta-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00018      0.35       2      21 ..      67      86 ..      66      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00018
   Ogr_Delta  2 CPhCgapaaartsrnlskdv 21
                CP+C ++++ + +++l+ ++
  CTQ29191.1 67 CPKCDHHMRMSARNRLHSLL 86
                ***************99876 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.0   0.00026      0.52       3      28 ..      47      71 ..      47      72 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00026
                  B-TTT--BBEEEECTTEEEEE-TTTT CS
  zf-FPG_IleRS  3 pCpRCwryiervgqagrstyfCprCq 28
                  +C+ C+ ++ r ++ +r+ ++Cp C 
    CTQ29191.1 47 KCDSCGQVLYRAEL-ERNLEVCPKCD 71
                  8*************.**********6 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.8   0.00015      0.29      17      40 .]      47      71 ..      45      71 .. 0.92
   2 ?   -3.0   0.1       4.3   8.6e+03      14      21 ..     171     179 ..     171     182 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
  Auto_anti-p27 17 tCpvCgvPLmrdr.kggkvyCvaCd 40
                    C+ Cg +L r   +++  +C+ Cd
     CTQ29191.1 47 KCDSCGQVLYRAElERNLEVCPKCD 71
                   6***********9*88999*****7 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.3
  Auto_anti-p27  14 LaetCpv.C 21 
                    L+++Cp  C
     CTQ29191.1 171 LEDNCPLiC 179
                    678899666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2525.82
//
Query:       CTQ29192.1  [L=62]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 511.42
//
Query:       CTQ29193.1  [L=219]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-26   92.1   3.6    3.3e-26   92.1   3.6    2.1  3  SNARE_assoc   SNARE associated Golgi protein
  ------ inclusion threshold ------
      0.023   14.5   6.7      0.044   13.5   1.9    2.1  2  CTP_transf_1  Cytidylyltransferase family
       0.55   10.6   6.6        4.3    7.7   0.4    2.6  2  DUF2929       Protein of unknown function (DUF2929)
       0.71    9.6   4.2          1    9.1   0.3    2.8  3  Doppel        Prion-like protein Doppel


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.49   2.2e+03      59      79 ..      18      38 ..      13      46 .. 0.70
   2 !   92.1   3.6   7.4e-30   3.3e-26       1     120 []      49     177 ..      49     177 .. 0.96
   3 ?   -3.0   0.2       2.2     1e+04      69      80 ..     193     204 ..     187     208 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.49
  SNARE_assoc 59 lerlverygflallllrllpi 79
                 l++lv +yg+++  +l l+ +
   CTQ29193.1 18 LAELVAQYGVWVYAILFLILF 38
                 567788888888777777655 PP

  == domain 2  score: 92.1 bits;  conditional E-value: 7.4e-30
  SNARE_assoc   1 lPsevllvaaGvlf.......glllgtlvtslgallGaslayllgrylgr...kalrrkllsekrvkalerlverygflallllrllpivPrdlvnyv 88 
                  lP++ ll++aG+l        ++ l++l+ +++a++G+ ++y +gr +g+   ++ ++k++ + ++++ +++ er+g ++++l+r++piv r+++++v
   CTQ29193.1  49 LPGDSLLFVAGALSalptndlNVHLMVLLMVIAAIVGDAVNYTIGRLFGEklfSNPNSKIFRRSYLDKTHSFYERHGGKTIILARFVPIV-RTFAPFV 145
                  79************77777777777*****************************************************************.******* PP

  SNARE_assoc  89 aGltrvsfkrFflatfiGsipwalvyaylGsl 120
                  aG+ ++s+++F++++++G+++w+l+++y+G+l
   CTQ29193.1 146 AGMGHMSYRHFAAYNVVGALLWVLLFTYAGYL 177
                  ******************************95 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.2
  SNARE_assoc  69 lallllrllpiv 80 
                  +a+++l +lp+v
   CTQ29193.1 193 VAIIVLSVLPGV 204
                  566777777776 PP

>> CTP_transf_1  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.9   9.9e-06     0.044     105     161 ..      31      99 ..       3     104 .. 0.68
   2 ?    3.6   0.2     0.011        47      41      94 ..     149     201 ..     125     218 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.9e-06
                   HHHHHHHHHHHHTHHHH..................TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--- CS
  CTP_transf_1 105 ervilallallyvvlll.................qslllienikeglllvllllalvvaaDigaYffGklfGkt 161
                   + ++l+l++                          + +l +n  + +l+vll++++ ++ D + Y +G+lfG++
    CTQ29193.1  31 AILFLILFCET-----GlvvtpflpgdsllfvagALSALPTNDLNVHLMVLLMVIAAIVGDAVNYTIGRLFGEK 99 
                   22222222222.....133455778888888888788899999999999999999999**************97 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.011
                   HHTT--SHHHHHHHHH...HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHH- CS
  CTP_transf_1  41 irlvrlkkrekrllllllslvlllllllflylesliallklvlllvlvllllvl 94 
                     +++++  +++++ + l +vll++   +l++   + + +l ll+v++++l vl
    CTQ29193.1 149 GHMSYRHFAAYNVVGA-LLWVLLFTYAGYLFGDLPVVQENLKLLIVAIIVLSVL 201
                   5667777777777777.7777777766666666555555555555555444443 PP

>> DUF2929  Protein of unknown function (DUF2929)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.4   0.00096       4.3      18      51 ..      55      88 ..      48      92 .. 0.80
   2 ?    5.2   1.1    0.0056        25       7      44 ..     165     201 ..     159     211 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00096
     DUF2929 18 gYIgsaLtgvtydfttalilavvfgvlviliial 51
                 ++++aL+  + + +++  + +++ +++i+++a+
  CTQ29193.1 55 LFVAGALSALPTNDLNVHLMVLLMVIAAIVGDAV 88
                69********999888888888888888877765 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0056
     DUF2929   7 ifWsfiLgevvgYIgsaLtgvtydfttalilavvfgvl 44 
                 + W +++   +gY  + L  v+ + +++++  +v++vl
  CTQ29193.1 165 LLWVLLF-TYAGYLFGDLPVVQENLKLLIVAIIVLSVL 201
                 6775555.579***********9998888877777776 PP

>> Doppel  Prion-like protein Doppel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.3   0.00023         1       6      20 ..      26      40 ..      23      44 .. 0.88
   2 ?   -0.9   0.5       0.3   1.3e+03      11      18 ..     164     171 ..     164     172 .. 0.89
   3 ?   -0.7   0.0      0.26   1.2e+03      17      25 ..     177     185 ..     176     185 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00023
                SSCCHHHHHHHHHHH CS
      Doppel  6 gtWwlAivCvLLfSh 20
                g+W  Ai++  Lf+ 
  CTQ29193.1 26 GVWVYAILFLILFCE 40
                9*************6 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.3
                 HHHHHHHH CS
      Doppel  11 AivCvLLf 18 
                 A++ vLLf
  CTQ29193.1 164 ALLWVLLF 171
                 8999***9 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.26
                 HHHHCCTTT CS
      Doppel  17 LfShLSlVk 25 
                 Lf +L+ V+
  CTQ29193.1 177 LFGDLPVVQ 185
                 9*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1670.79
//
Query:       CTQ29194.1  [L=270]
Description: pseudouridylate synthase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-40  138.4   0.2    1.4e-28   99.5   0.0    2.1  2  PseudoU_synth_1  tRNA pseudouridine synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_1  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   1.7e-13   3.1e-09       4     107 ..      17     111 ..      15     112 .. 0.94
   2 !   99.5   0.0   7.9e-33   1.4e-28       1     108 []     151     253 ..     151     253 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 1.7e-13
  PseudoU_synth_1   4 elvGthdfgsfckqkqekkntvrtileaaieevsgeekellvvtvkgsgFldhqVRamvgvlfavgqgklspedvkellnakkrkkiavetapa 97 
                      e++G++++g +  q+q++ ++v++ le a+++v++e      +tv ++g++d++V+  ++v+   ++ +++   ++  +na+++ +iav++++ 
       CTQ29194.1  17 EYDGSKYYG-W--QRQNEVRSVQEKLEKALSQVANE-----PITVFCAGRTDAGVHGTGQVVHFETRAQRKDAAWTLGVNANLPGDIAVRWVKH 102
                      7********.9..89999******************.....9********************6667888888899999**************** PP

  PseudoU_synth_1  98 vglvlfhvrY 107
                      v+  +fh+r+
       CTQ29194.1 103 VPA-DFHARF 111
                      **9.*****9 PP

  == domain 2  score: 99.5 bits;  conditional E-value: 7.9e-33
  PseudoU_synth_1   1 AakelvGthdfgsfckqkqekkntvrtileaaieevsgeekellvvtvkgsgFldhqVRamvgvlfavgqgklspedvkellnakkrkkiavet 94 
                      Aa+ l+G++df+sf++ +++++++ r++++++++++  +    +vv++k+++F++h+VR++vg l++vg g++++++++ell+ak+r+  a+ t
       CTQ29194.1 151 AAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRYGAY----VVVDIKANAFVHHMVRNIVGSLMEVGAGNQPESWMAELLAAKDRTL-AAAT 239
                      8999******************************55555....8*******************************************98.**** PP

  PseudoU_synth_1  95 apavglvlfhvrYd 108
                      a+a+gl+l++v+Y+
       CTQ29194.1 240 AKAEGLYLVSVDYP 253
                      *************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2220.53
//
Query:       CTQ29195.1  [L=337]
Description: putative semialdehyde dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-37  129.4   0.0      2e-37  129.1   0.0    1.2  1  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
    6.7e-25   87.9   0.0    1.6e-24   86.7   0.0    1.6  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
     0.0028   18.4   0.0     0.0047   17.6   0.0    1.3  1  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer
     0.0071   15.9   0.1      0.011   15.3   0.1    1.3  1  NmrA             NmrA-like family
  ------ inclusion threshold ------
      0.017   15.7   0.2       0.04   14.5   0.2    1.6  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.033   13.4   0.0      0.049   12.8   0.0    1.2  1  NAD_binding_4    Male sterility protein
      0.034   13.3   0.1      0.048   12.7   0.1    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
      0.084   12.3   0.0       0.11   11.9   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
        0.1   12.4   0.2       0.18   11.7   0.2    1.4  1  NAD_binding_10   NAD(P)H-binding
       0.16   12.2   0.1       0.33   11.2   0.1    1.6  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.0   1.1e-40     2e-37       1     183 [.     141     317 ..     141     318 .. 0.94

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 1.1e-40
                      HHHHHHCTT.EEEEEEEEEEEGGGCHHHHHHHHHHHHHHH.HHSTTS.CTTTSSHHTTSEESTCSTBTTTTCHCBHHHHHHHHHHHHHCTESC. CS
  Semialdhyde_dhC   1 LkPLldalgelervivatyqavSGaGkkgvreLlkqvael.qrsdeakpgvfgvpiagNlipyidkeedkgepetreelkavaetkkilefte. 92 
                      LkPL+d+ g+l+r++v+ + ++SG+Gkk+v++L++q+a+l + ++  + ++fg+++a+N++p+  +   +g   +ree++ v+e +kil++   
       CTQ29195.1 141 LKPLIDQ-GGLSRISVTNLLSASGQGKKAVDALAGQSAKLlNGIPIDEDDFFGRQLAFNMLPLLPD--REG--SVREERRIVDEARKILQDDGl 229
                      8*****9.****************************66650556778999****************..557..89******************* PP

                      SEEEEEEEESBSSEEEEEEEEEESSSHHHHHHHHHHHHCSTTEEEEESSHCHHSSHHHHTTCSSSEEEEEEEEETTCTTEEEEEEEEETTT CS
  Semialdhyde_dhC  93 kvsatcvrVPvlrGhseavtiklklkdveveeveellaaapevkvvvneeedrPtpaavaggtnsvsVGRirkdemgdeglklvvvgDNll 183
                      ++sa++v+ Pv++Gh ++v++++  ++  +ee+++++++ +++++ ++  +++Pt++ +a g    s+G++ +d  ++e++++++v+DN++
       CTQ29195.1 230 MISASVVQSPVFYGHAQMVSFEA-MRPLAAEEARDAFTRGEDIELSEE--GEFPTQVGDASGNARLSIGCVHNDYGMPEQIQFWSVADNVR 317
                      ***********************.6***************99999988..8**********9***************************98 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   8.7e-28   1.6e-24       1     115 [.       6     115 ..       6     120 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 8.7e-28
                     EEEEETTTSHHHHHHHHHHHC.TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTSEEE CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLee.hpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapklaeagvkvi 94 
                     ++a++GatG+vG++ll+ L+e +++v ++++l+++ saG+ l++       gk + v+d+ e ++ +++++f+a++ ++s+++++++ +ag+ vi
      CTQ29195.1   6 NIAVLGATGAVGEALLETLAErQFPVGEIFALARNDSAGEHLRFG------GKSVIVKDAAEFDWTQAQLAFFAAGVEASAAYVEEATNAGCLVI 94 
                     69*******************************************......77****************************************** PP

                     ESSSTTTTSTTSEBE-HHHHG CS
  Semialdhyde_dh  95 DlssdfRlkddavyvlpevnr 115
                     Dls+ f l++d+++v+p vn+
      CTQ29195.1  95 DLSGLFALEPDVPLVVPDVNP 115
                     ********************8 PP

>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.6e-06    0.0047       1     106 [.       7     104 ..       7     109 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.6e-06
                      EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHCH.TT-SE CS
  DXP_reductoisom   1 vviLGsTGSIGtqtLdvieenpdkfevvalaagsnvellaeqakefkpklvavadeeaaeelkealkekelktevlvGeealkelaee.eeadv 93 
                      +++LG+TG +G++ L+ ++e++  f v  + a  + +++ e   +f  k v+v+d+++ +  +++l+       +++G ea ++ +ee ++a +
       CTQ29195.1   7 IAVLGATGAVGEALLETLAERQ--FPVGEIFALARNDSAGEH-LRFGGKSVIVKDAAEFDWTQAQLA------FFAAGVEASAAYVEEaTNAGC 91 
                      79***************99987..999999887776766665.57999***************9995......466777766665554266778 PP

                      EEE--SSGGGHHH CS
  DXP_reductoisom  94 vvaaivGaaGLkp 106
                      +v  ++G+  L+p
       CTQ29195.1  92 LVIDLSGLFALEP 104
                      8888888888877 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   6.2e-06     0.011       1      35 [.       7      44 ..       7      92 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.2e-06
                EEESSTTSHHHHHHHHHHHHHT-EE...EEEES-S-SH CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkv...ralvRdtkse 35
                I+v+GaTG+ G+++ + l++++++v   +al R+ +  
  CTQ29195.1  7 IAVLGATGAVGEALLETLAERQFPVgeiFALARNDSAG 44
                89*********************865559999998543 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   2.2e-05      0.04       2      93 ..       7      95 ..       6      97 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.2e-05
                   EEEE.TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHH.HHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEEE CS
  F420_oxidored  2 igii.GaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneea.aeeadvvvlavkpedveevlselakdalkgklvis 93
                   i+++ ++G +geal++ l+++ ++  ei  a  rn +  e+l+   g +v+ +d++e   ++a   ++a   e+ ++ ++e+   + +g lvi+
     CTQ29195.1  7 IAVLgATGAVGEALLETLAERQFPVGEIF-ALARNDSAGEHLRFG-GKSVIVKDAAEFdWTQAQLAFFAAGVEASAAYVEEA---TNAGCLVID 95
                   99**779**********************.989999988888644.345555444444133688888888888877777777...778888887 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.7e-05     0.049       3      34 ..      11      43 ..       9      60 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.7e-05
                   -TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSH CS
  NAD_binding_4  3 GaTGFLGkvLlekLLrttpev.kiyllvRaksg 34
                   GaTG +G+ Lle L +++  v +i++l+R++s 
     CTQ29195.1 11 GATGAVGEALLETLAERQFPVgEIFALARNDSA 43
                   9**************99999*********9875 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   2.7e-05     0.048       2     100 ..       6      97 ..       5     102 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.7e-05
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TTT--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEE CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltreeldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnaeavealAeaaaavgalLi 97 
                    +i v+Ga+G++G +L + lae+++ v  +    + l++++++ e l+   ++v+v+ AA  ++ +a     a +a+ +ea++a  e+a+++g l+i
     CTQ29195.1   6 NIAVLGATGAVGEALLETLAERQFPVGEI----FALARNDSAGEHLRFGGKSVIVKDAAEFDWTQAQ---LAFFAAGVEASAAYVEEATNAGCLVI 94 
                    589*******************9666555....89999999*******9**************9984...56788889999999999999999999 PP

                    EEE CS
  RmlD_sub_bind  98 hvS 100
                     +S
     CTQ29195.1  95 DLS 97 
                    988 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.4e-05      0.11       1      50 [.       7      64 ..       7      89 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.4e-05
                EEEETTTSHHHHHHHHHHHHCT...SEEEEEES-STTTTCHHCHHC.....EEEE--T CS
   Epimerase  1 ilVtGatGfiGsalvkallekg...yevigldrlssasntarledl.....elveldl 50
                i V+GatG +G al++ l+e++    e+ +l+r+ sa+++ r   +     +  e d+
  CTQ29195.1  7 IAVLGATGAVGEALLETLAERQfpvGEIFALARNDSAGEHLRFGGKsvivkDAAEFDW 64
                68********************997789999999888887765555444444444444 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   9.8e-05      0.18       1      36 [.      11      48 ..      11      81 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.8e-05
                    TTTSHHHHHHHHHHHHC-..T-EEEEEETTHHHCHHHH CS
  NAD_binding_10  1 GAtGkvGrllvkellarg..ghevtalvRnpeklaele 36
                    GAtG vG +l++ l++r+    e+ al+Rn +  ++l+
      CTQ29195.1 11 GATGAVGEALLETLAERQfpVGEIFALARNDSAGEHLR 48
                    9****************865446689999998887775 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00018      0.33       1      45 [.       7      65 ..       7     106 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
                     EEEE--.SHHHHHHHHHHHCTCCT-G.EEEEEESSHHHHHHHHCHH.............T CS
  Sacchrp_dh_NADP  1 vliiGa.GsvGqavaellarhfdvda.eitvadrskeklealaaka.............l 45
                     + ++Ga G+vG+a++e la+++ ++  ei    r+++  e+l                 +
       CTQ29195.1  7 IAVLGAtGAVGEALLETLAERQ-FPVgEIFALARNDSAGEHLRFGGksvivkdaaefdwT 65
                     689**************99876.3335**9999999998887543344455555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2599.94
//
Query:       CTQ29196.1  [L=378]
Description: erythronate-4-phosphate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-31  107.7   0.0    7.1e-31  106.9   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    8.9e-29   99.1   0.0    1.4e-28   98.4   0.0    1.3  1  DUF3410        Domain of unknown function (DUF3410)
    1.9e-18   66.4   0.0    2.7e-18   65.9   0.0    1.1  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
  ------ inclusion threshold ------
      0.034   14.3   0.0        0.1   12.8   0.0    1.8  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.0   1.6e-34   7.1e-31      30     167 ..     110     246 ..     103     256 .. 0.87

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 1.6e-34
                   SBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--STT....TTTSBSHHHHHCSTTTEE CS
  2-Hacid_dh_C  30 lgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltpe....trhlinaeelakmkkgai 122
                    g  l+++tvGi+G+G++G ++ krl+a+g+k +  d+ + ++    ++g ++ sle+l++e+D+++ h+pl +e    t hl +++ ++++k+g i
    CTQ29196.1 110 DGFALRDRTVGIVGVGNVGGRLQKRLEALGIKTLLCDPPRADRG---DEG-YFRSLEALVQEADVITFHTPLYKEgqykTLHLADEALISRLKPGTI 202
                   67789**********************************87433...445.599*****************9885444489**************** PP

                   EEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHH CS
  2-Hacid_dh_C 123 liNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedsplle 167
                   liN+ RG++vd++aLl+ L++g+   ++lDv+e+ep  +  +ll+
    CTQ29196.1 203 LINACRGPVVDNAALLKRLEAGQPLSVVLDVWEPEPDLNV-ELLK 246
                   ***********************************98754.5654 PP

>> DUF3410  Domain of unknown function (DUF3410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.0   3.2e-32   1.4e-28       1      81 []     289     369 ..     289     369 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 3.2e-32
                 CS---SCEEEEESTTS-HHHHHHHHHHH--CHHHHHHHHHCTTCCCHHHHHHHT------GGGSEEEETCTCHHHHHHHHT CS
     DUF3410   1 llpepelnelsltgkldeealkklvrlvYDvrrDdalfRrelekakgFdalRknYpeRREfsaltvtlkkssdaellsklG 81 
                 llp+pe+ +++l+g ld+ +lk+lv+lvYDvrrDda +R+++  a++Fd+lRknY+eRRE+s+l v++++++ a+ll++lG
  CTQ29196.1 289 LLPAPEFGRITLHGPLDQPTLKRLVHLVYDVRRDDAPLRKVAGVAGEFDKLRKNYQERREWSSLYVQCSDEQAATLLRQLG 369
                 89******************************************************************************9 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0     6e-22   2.7e-18       5     125 ..       7     279 ..       3     285 .. 0.94

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 6e-22
                 ST.CHHHHHHHHHTTE.EEEEESCSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   5 eplreeelellkeegv.evevkdellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt 102
                 e+  ++++el+++  + +v+     +    ++++ dadal+vrs t+v++++l+  + +k++++a++G+D+vD +++++ Gi  + +pg+++++v E++
  CTQ29196.1   7 EN-MPYARELFSR--LgDVQAIPGRPVP--ADALTDADALMVRSVTRVNEALLAG-KAIKFVGTATAGTDHVDQAWLQQAGIGFSAAPGCNAIAVVEYV 99 
                 44.6777777777..4466666655544..789999*****************98.9****************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  CTQ29196.1 100 fssllmlaerdgfalrdrtvgivgvgnvggrlqkrlealgiktllcdppradrgdegyfrslealvqeadvitfhtplykegqyktlhladealisrlk 198
                 *************************************************************************************************** PP

                 ..........................................................T-BHHHHHHHHHHHHHHHHHHHT CS
                 ..........................................................xxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ..........................................................aaTeeaqeniaeeaaenlvaflk 125
                                                                           ++T e   +  ++++e++ af+ 
  CTQ29196.1 199 pgtilinacrgpvvdnaallkrleagqplsvvldvwepepdlnvellkrvdigtahiaGYTLEGKARGTTQVFEAYSAFIG 279
                 *****************************************************************************9985 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.3   5.6e+03      98     119 ..      47      69 ..      31      78 .. 0.61
   2 ?   12.8   0.0   2.3e-05       0.1       1     104 [.     118     221 ..     118     230 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.3
                    HHHHHH.HHHTT-EEEEEEEESH CS
  NAD_binding_2  98 relake.lkekglkfldaPVSGG 119
                    ++++++ l+ k +kf+++   G+
     CTQ29196.1  47 TRVNEAlLAGKAIKFVGTATAGT 69 
                    44444425556677777666665 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.3e-05
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHH..HHHHHHHS...HCCC--TT-EEEE-S- CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagk..avdevieg...llealkkgdilidgst 91 
                    ++g++G+G+ G  + ++l++ g+k+ + +    ++++  +eg   + s+e+lv+++dv+ +  +  k  + +++      l+++lk+g+ili+   
     CTQ29196.1 118 TVGIVGVGNVGGRLQKRLEALGIKTLLCDPP--RADRG-DEG--YFRSLEALVQEADVITFHTPLYKegQYKTLHLAdeaLISRLKPGTILINACR 208
                    58***************************54..44443.333..58999*******99987665444004444333366999**********9876 PP

                    --HHHHHHHHHHH CS
  NAD_binding_2  92 sspedtrelakel 104
                      + d+  l k+l
     CTQ29196.1 209 GPVVDNAALLKRL 221
                    6666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 3194.71
//
Query:       CTQ29197.1  [L=325]
Description: flagella control of anti-sigma factor FlgM secretion into the periplasm [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.38   10.3   2.6       0.53    9.8   2.6    1.3  1  Sulf_transp  Sulphur transport
        1.1    9.6   4.4          6    7.2   2.0    2.9  3  NifQ         NifQ


Domain annotation for each model (and alignments):
>> Sulf_transp  Sulphur transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.6   5.9e-05      0.53     125     192 ..     260     323 ..     214     325 .] 0.62

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 5.9e-05
  Sulf_transp 125 lyetlglsplllialllliallllvk.elrkeklqeaeklektslakklfrkpwslvlgavllgllavl 192
                  +   + lsp   + +l+l+  +++++ ++++e+l+ ++  e+    +++  kpw+l+lgav+l l+ +l
   CTQ29197.1 260 VTPRTTLSP---AQILALLNKVFVLRvARAQETLAIPQ--EEPVARRTWSAKPWQLALGAVVLLLVLWL 323
                  222233333...44555555666664355555555555..66777789**************9877554 PP

>> NifQ  NifQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   2.0   0.00067         6       7      76 ..      45     116 ..      39     149 .. 0.75
   2 ?    1.1   0.1     0.052   4.7e+02      13      78 ..     122     187 ..     112     201 .. 0.73
   3 ?   -0.0   0.0      0.11     1e+03      11      44 ..     255     288 ..     247     306 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00067
        NifQ   7 alaleeaea....laealGlsaaelaeLlerlfpgaeaaleaaalaeeleeeraeeeedlralLlehaseeaee 76 
                 al+ +++++    +++ lGl+ ++   Ll+ +f++aea+l++  +a++ ++++++  ++l +lL + ++++a +
  CTQ29197.1  45 ALTSQQNAEvwacVKHDLGLKGDS--PLLACHFSAAEASLNQRLAAAQDNHHHRQTLAQLSDLLGQGNNRQAVS 116
                 444444444454577888888875..79*********9999999999999999************999888755 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.052
        NifQ  13 aealaealGlsaaelaeLlerlfpgaeaaleaaalaeeleeeraeeeedlralLlehaseeaeeer 78 
                 +   ++  +ls+++l+++l+ l  g  +  + ++   +l++   +e ++l++l+++ a+++ e ++
  CTQ29197.1 122 HYGQTALHALSQTQLETILHLLQHGQLSIPQPQQRPPTLRPLLPAEHNTLNQLVTKLAAATGEPSK 187
                 444667778888888888888776666555888888888888999999999999888877776655 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.11
        NifQ  11 eeaealaealGlsaaelaeLlerlfpgaeaalea 44 
                 +++ ++++++ ls+a++ +Ll+++f    a++++
  CTQ29197.1 255 SRSWQVTPRTTLSPAQILALLNKVFVLRVARAQE 288
                 44456889999***********999655544332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2467.76
//
Query:       CTQ29198.1  [L=391]
Description: putative transporter; UPF0226 family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-31  108.9  64.6    1.8e-15   56.8  30.7    2.0  2  MFS_1       Major Facilitator Superfamily
    4.5e-06   25.8  16.7    0.00063   18.7   9.3    2.3  2  MFS_1_like  MFS_1 like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1  32.5   6.4e-19   5.8e-15       2     233 ..      21     242 ..      20     249 .. 0.80
   2 !   56.8  30.7     2e-19   1.8e-15       4     169 ..     224     386 ..     221     391 .] 0.91

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 6.4e-19
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa.......sslwlllvlr 92 
                  +a+fl++++ ++ +p++pl++ ++lg+  +++g ++++ +l+++++   +Grl+d +G++r +l g+l+ al+ +++l+ a       + l lll++r
  CTQ29198.1  21 TFAVFLTYMTVGLPLPVIPLFVHQELGFGNTVVGVAVGIQFLATVLTRGYAGRLADQYGAKRSVLQGMLACALAgAAWLAAAllplpvlARLGLLLLGR 119
                 699***********************************************************99999999999966666632445667888889***** PP

       MFS_1  93 vlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgt 191
                 ++ G+g++ l+++ +++   ++ + + g+++++ ++++  + ++g++lg l++s++g  ++  +  ++ l+a      +l    +++    +  e    
  CTQ29198.1 120 LILGFGESQLLTGNLSWGMGLVGPARSGKVMSWNGMAMYGSLAVGAPLGLLIYSHFGVAVLACVTMGLPLVA------WLINGTVRKVAA-HGGE---- 207
                 *******************************************************99654444444444443......443333333333.3344.... PP

       MFS_1 192 gpaplvpawkallkdpvlwillialllfffgfsglltllply 233
                  p+ ++  +++++++     + ++l ++  gf+ + t++ ly
  CTQ29198.1 208 RPSLWSV-IGMIWRPG----IGLGLQGV--GFAVIGTFVSLY 242
                 4788888.99999999....44444444..566666666665 PP

  == domain 2  score: 56.8 bits;  conditional E-value: 2e-19
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagal 102
                 ++ l + +++++g++++l+ a++   s   +g+ lt+++ +++++ +++G++ drfG  +v +++ll+ a+gl+ll +a++ wl l++ +l+G g++++
  CTQ29198.1 224 GLGLQGVGFAVIGTFVSLYFASH---SWPMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAMVSLLIEAVGLTLLGLAPNAWLALAGAALTGCGCSLI 319
                 66788889999999999766665...77899*****************************************7777788******************** PP

       MFS_1 103 fpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfl 169
                 fp+ ++ +++ +p + rg a+g ++a+  +++ l+ +l glla+slg+++vf++ a+ ++l++++ l
  CTQ29198.1 320 FPSLGVEVVKRVPAQVRGTALGGYAAFQDISYGLTGPLTGLLATSLGYSSVFLAGALCAALGILVTL 386
                 *****************************************************99999999988544 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.8   8.9e-06     0.079       5      75 ..      21      92 ..       9     118 .. 0.62
   2 !   18.7   9.3   7.1e-08   0.00063     236     357 ..     227     346 ..     162     384 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.9e-06
  MFS_1_like  5 kilyFfffaalgsllPYltiylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilsllls 75
                 +  F+ + ++g  lP + ++ + + g+    +g+ + i  l ++l +   g laD++g++  v+   l ++
  CTQ29198.1 21 TFAVFLTYMTVGLPLPVIPLFVHqELGFGNTVVGVAVGIQFLATVLTRGYAGRLADQYGAKRSVLQGMLACA 92
                444566666666666666666653456666666666666666666666666666666666666554333333 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 7.1e-08
  MFS_1_like 236 ilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaa 334
                 + g+ +++i++F++lY+     s  ++G +++    a + + ++  ++ +++G vk+ +++ll+ ++ + l+++  nawl+l   +L g+ + l++ ++
  CTQ29198.1 227 LQGVGFAVIGTFVSLYF--ASHSWPMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAMVSLLIEAVGLTLLGLAPNAWLALAGAALTGCGCSLIFPSL 323
                 5688899**********..5555566666655544444555555679*************************************************765 PP

  MFS_1_like 335 veyvskiapksleatgqgllsgl 357
                    v k +p ++++t  g ++++
  CTQ29198.1 324 GVEVVKRVPAQVRGTALGGYAAF 346
                 44455589999999988765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 2986.29
//
Query:       CTQ29199.1  [L=406]
Description: 3-oxoacyl-(acyl-carrier-protein) synthase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-39  136.3   2.7      2e-39  135.7   2.7    1.3  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    9.6e-30  103.0   1.2    2.7e-29  101.6   0.4    2.1  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
    0.00014   22.3   0.0    0.00024   21.5   0.0    1.4  1  KAsynt_C_assoc   Ketoacyl-synthetase C-terminal extension
     0.0004   19.8   0.1    0.00077   18.9   0.1    1.4  1  Thiolase_N       Thiolase, N-terminal domain


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   2.7   4.4e-43     2e-39       2     253 .]       2     246 ..       1     246 [. 0.86

  Alignments for each domain:
  == domain 1  score: 135.7 bits;  conditional E-value: 4.4e-43
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTSSTTEEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadklydpparaagkiktklggfldvddfdpeffgispreaeamdpqqrllleaaw 97 
                    ++ +i+G+g++ + gn+ +e+  +L+egr++i+ + + + + ++    ++++ g +k             +++  i  + ++ m+ ++ ++   ++
     CTQ29199.1   2 KRAVITGLGIVSSIGNNQQEVLASLREGRSGIT-FSQ-ELKDSGM---RSHVWGNVKL------------DTTGLIDRKVVRFMSDASIYAYLSME 80 
                    5779*****************************.553.3445555...7999999998............556666666677************** PP

                    HHHHHHTS-HHTC.TTGGEEEEEEESSTHH.....HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSEEEEESGGGHHHHHHHHHHH CS
  ketoacyl-synt  98 ealedagltpeel.dgsrvgvfiGvgagdy.....aalaaldedgsevkaspkavgavlanviagrisyalglrGpsvtvdtACsSslvavhaavq 187
                    +a++dagl pe+  +++rvg ++G+g g+      +a a+ +++g  + + p++v++++a+ +++ ++  ++++G+++++++AC++s+  +  av+
     CTQ29199.1  81 QAVADAGLAPEAYqNNPRVGLIAGSGGGSPkfqvfGADAMRSPRG-LKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSAHCIGNAVE 175
                    **********99856666**********44445776656666566.899999888889*****************************66666666* PP

                    HHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TT...SGGGTTBTTB...-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 188 slrsgeadvalaGGvellltpeavagfsaagllspd...grckafdpka...dGfvlGEGvGavvLkrleda 253
                    +++ g++d+++aGG e  l++e  + f+a+g+ls++    ++ka++ ++   dGfv++ G G+vv+++le+a
     CTQ29199.1 176 QIQLGKQDIVFAGGGE-ELCWEMACEFDAMGALSTKyndTPEKASRTYDanrDGFVIAGGGGMVVVEELEHA 246
                    ****************.99999999******777776877888888888888*****************987 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.7   3.1e+03      29      42 ..      78      91 ..      67      94 .. 0.83
   2 !  101.6   0.4     6e-33   2.7e-29       1     117 [.     254     361 ..     254     362 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.7
                     HHHHHHHHHT--GG CS
  Ketoacyl-synt_C 29 aiekalaeagvdpe 42
                      +e+a+a+ag++pe
       CTQ29199.1 78 SMEQAVADAGLAPE 91
                     5999******9997 PP

  == domain 2  score: 101.6 bits;  conditional E-value: 6e-33
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      ya+i+g++++sdga   + ap+ge++ r+++ a+  +++    +dy++ hgt+tp+gD +El a+++vfg+++     a++++K+++GH+++Aa
       CTQ29199.1 254 YAEIVGYGATSDGA--DMVAPSGEGAVRCMQMAMHGVDTP---IDYLNSHGTSTPVGDVKELGAIREVFGDNS----PAISATKAMTGHSLGAA 338
                      8**********998..567788**************9999...****************************98....89*************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      Gv e+i ++l+l+hg i+p++n+
       CTQ29199.1 339 GVQEAIYSLLMLEHGFIAPSINV 361
                      *********************98 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   5.3e-08   0.00024      11      47 ..     369     405 ..     357     406 .] 0.88

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.3e-08
  KAsynt_C_assoc  11 grlkVvteptpwpggivgvNsfGfGGsnvHviLksnk 47 
                       l++vt+pt+ + ++v  NsfGfGG+n+ +++++++
      CTQ29199.1 369 AGLNIVTKPTDAKLTTVMSNSFGFGGTNATLVMRKYN 405
                     4699****************************99875 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.7e-07   0.00077      74     120 ..     152     198 ..     135     227 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.7e-07
                 TTSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEESTTS-E CS
  Thiolase_N  74 eevpavtvnkvcsSglkavalaaqsiaageadvvvagGvEsmsnapt 120
                  + +   +  +c+ +++ + +a+++i+ g+ d+v agG+E++     
  CTQ29199.1 152 IHGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMA 198
                 5555678999******************************9876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3168.47
//
Query:       CTQ29200.1  [L=662]
Description: fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase; FAD-dependent demodification enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-49  166.0   0.0    4.7e-49  165.4   0.0    1.3  1  Methyltransf_30  S-adenosyl-L-methionine-dependent methyltran
    4.3e-49  168.0   2.0    4.3e-49  168.0   2.0    1.5  2  DAO              FAD dependent oxidoreductase
  ------ inclusion threshold ------
       0.05   13.8   0.9       0.38   11.0   0.1    2.9  4  NAD_binding_8    NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> Methyltransf_30  S-adenosyl-L-methionine-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.4   0.0   7.9e-53   4.7e-49       1     123 [.     118     244 ..     118     245 .. 0.98

  Alignments for each domain:
  == domain 1  score: 165.4 bits;  conditional E-value: 7.9e-53
                      GGGHHHHHHHHHHTS-S-SEEEEEEETTTTEEEEEEES-HHHHHHHC-....T-EEEEEE-SS-TTTSGGGCSHHHHHHHHHHEEEEEEEEES- CS
  Methyltransf_30   1 eeleelakallkeyllalaglqrlelaaeevtlklligdarealkeld....ekadawFlDgFsPaknPelwseellkelarllkkkgtlatys 90 
                      +el+ +a++l++++++a  g++rl l++++vtl+l++gd++e   eld    +++dawFlDgF+PaknP++w+++l++++arl++++gtlat++
       CTQ29200.1 118 PELAPWAQQLQAQWPSAFGGCHRLLLDGGRVTLDLWFGDINELTRELDdslnQQVDAWFLDGFAPAKNPDMWTQDLFSAMARLARPGGTLATFT 211
                      57899*******************************************9**9****************************************** PP

                      --HHHHHHHHHTT-EEEEEE-CTCSSEEEEEES CS
  Methyltransf_30  91 sAgavrrgLkeaGfkvekrkgfgrKremlkask 123
                      sAg+vrrgL+eaGf+++k+kgfgrKreml++ +
       CTQ29200.1 212 SAGFVRRGLQEAGFTMRKSKGFGRKREMLTGEM 244
                      *****************************9976 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.84     5e+03      66      91 ..     118     143 ..     100     226 .. 0.46
   2 !  168.0   2.0   7.3e-53   4.3e-49       2     351 ..     267     628 ..     266     629 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.84
                 HHHHHHHHHHSSTTSEEEEEEEEEES CS
         DAO  66 eelreleeelgididyrrtGllslaa 91 
                  el+ ++++l  +++    G+  l  
  CTQ29200.1 118 PELAPWAQQLQAQWPSAFGGCHRLLL 143
                 33333333333334433333333332 PP

  == domain 2  score: 168.0 bits;  conditional E-value: 7.3e-53
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHH CS
         DAO   2 vviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeelea 98 
                  +iiGGGi+ +   ++L rrg  Vtl+++++ +++gaSg+ +g l++ l+   +  +lar+  +a+ + r++ + l + +d++++G+ +l++de++  +
  CTQ29200.1 267 AAIIGGGIASALLSLALLRRGwqVTLYCADEAPAQGASGNRQGALYPLLSQHDP--ALARFFPAAFTFARRMYDALPVMFDHQWCGVTQLGWDEKSTHK 363
                 58*********************************************9975554..68899999999996666666777**************999999 PP

                 HHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEE.EEEEEE CS
         DAO  99 ldkllallleagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttpgen.daadav 196
                 ++++lal l+ ++    ++ae+v+ l   ++  +g++ yp +g+++p++lta l++ a+++G ++++g +v+ l++ +g++w +     +++  + +av
  CTQ29200.1 364 IAQMLALNLPPDIAC-AVTAEQVAGLTG-VDTGCGGITYPAGGWLCPQQLTAELLALAATRGLHVHYGYPVETLSA-EGDGWLL-----NQQrYH-QAV 453
                 999999988877765.79***9999996.54446****************************************77.5788999.....334234.88* PP

                 EE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEE..TTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHH CS
         DAO 197 VnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtpr..kdgrvlvGgtadeesgdddpevdeedidelleal 292
                 V+a+G+  + +    ++ +lp++pv gqv ++ p++        +++++  + + +g y+tp    ++++++G+++  ++g++d++++eed ++ +++l
  CTQ29200.1 454 VLANGHRITgFG---QTAQLPVYPVGGQVSHI-PTTPR------LAALR-QVLCYDG-YLTPQnpQNQQHCIGASY--HRGKTDTTFSEEDQQHNRQRL 538
                 *******88443...33355************.76652......33444.8899988.99996547788*****97..6666667************** PP

                 HHHSGG.....GCGEEE..EEEEEEE.ETTSSEEEEEEE.......................TEEEEEEEEECTTTHHHHHHHHHHHHHH CS
         DAO 293 rklfPq.....lgdvlr..kwaGlrp.lpdglpligetp.......................gvkglylatGhsghGltlapatGkllae 351
                  ++fP+     + d++   +++G+r+ ++d+lp++g++p                         ++l+++   +++Gl +ap++++lla 
  CTQ29200.1 539 IDCFPGaewpqDVDISAndARCGVRCaTRDHLPMVGNVPdyaatltqyaslheqpdiadsapVCRNLFMLGALGSRGLCTAPLSAELLAA 628
                 ****886554457777445*******779********99**********************9999***********************96 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.4   1.4e+04      30      42 ..     202     214 ..     200     219 .. 0.80
   2 ?   11.0   0.1   6.4e-05      0.38       1      42 [.     269     309 ..     269     340 .. 0.70
   3 ?   -0.9   0.0      0.34     2e+03      13      46 ..     442     476 ..     441     494 .. 0.71
   4 ?   -2.6   0.0       1.2     7e+03      28      48 ..     557     580 ..     550     587 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.4
                    SSSGGG-EECETT CS
  NAD_binding_8  30 rlGGraasyevpg 42 
                    r+GG +a+++  g
     CTQ29200.1 202 RPGGTLATFTSAG 214
                    899*999998866 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 6.4e-05
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETT CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpg 42 
                    I+G+G++++++  +L ++g +v+l+ + + +  + as +++g
     CTQ29200.1 269 IIGGGIASALLSLALLRRGWQVTLYCADEAP-AQGASGNRQG 309
                    9***********************9655555.4555555555 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.34
                    HHHHCCTE.EEEEE-SSSSSSGGG-EECETTCEEC CS
  NAD_binding_8  13 ylLakagf.dvlllekrdrlGGraasyevpgvrvd 46 
                    +lL ++++ + ++l +++r+ G  +++++p ++v 
     CTQ29200.1 442 WLLNQQRYhQAVVLANGHRITGFGQTAQLPVYPVG 476
                    78888866469999999999999999988755543 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1.2
                    SSSSSGGG-EECE...TTCEECTS CS
  NAD_binding_8  28 rdrlGGraasyev...pgvrvdyg 48 
                      r+G r+a++++    g++ dy 
     CTQ29200.1 557 DARCGVRCATRDHlpmVGNVPDYA 580
                    578999999998764424444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 5237.03
//
Query:       CTQ29201.1  [L=94]
Description: hypothetical protein CH1034_250329 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-37  125.6   0.1    7.9e-37  125.5   0.1    1.0  1  YfcL      YfcL protein


Domain annotation for each model (and alignments):
>> YfcL  YfcL protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   0.1   4.4e-41   7.9e-37       2      85 .]       5      88 ..       4      88 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.5 bits;  conditional E-value: 4.4e-41
        YfcL  2 efeekleeliddvvekasddeLFaggYLrGhlalavaeleeegetslealkekveeslekAikkgELspaDqalVkelWqeLke 85
                efe+++++lid++v++asddeLFaggYLrGhl+lavaele ege+s++a++++v++slekAi++gELsp+Dq+lV+ +W++L++
  CTQ29201.1  5 EFESRILALIDNMVDHASDDELFAGGYLRGHLTLAVAELEGEGEHSADAVHSRVSQSLEKAISAGELSPPDQILVQGMWHNLYQ 88
                8*********************************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 764.83
//
Query:       CTQ29202.1  [L=182]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-80  268.1   0.1    2.6e-80  267.9   0.1    1.0  1  EpmC      Elongation factor P hydroxylase


Domain annotation for each model (and alignments):
>> EpmC  Elongation factor P hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.9   0.1   1.4e-84   2.6e-80       1     163 []      13     175 ..      13     175 .. 0.98

  Alignments for each domain:
  == domain 1  score: 267.9 bits;  conditional E-value: 1.4e-84
        EpmC   1 lfnelfaeeyntrLvkgddePiYlPadeeeelhriifahgyfasalheiahWciaGeerrkleDygYWYePDGrdaeqqaefekvevkPqalewllala 99 
                 lf+++faee+ntrL+kgddePiYlPad+e+++hri+fahg+fasalhei+hWc+aG++rr+++D+gYWY+PDGrda +q++fe+vevkPqa+ewl+++a
  CTQ29202.1  13 LFDSCFAEEFNTRLIKGDDEPIYLPADDETPYHRIVFAHGFFASALHEISHWCVAGKARREQVDFGYWYCPDGRDAMTQSQFEDVEVKPQAFEWLFCVA 111
                 7************************************************************************************************** PP

        EpmC 100 aglkfkvsvDnleg.eeadrkafkkkvaeqvlaylekglpkraekflealaefyetekslkaekf 163
                 ag++f+vs+Dnleg  e+dr af+++v+++v+++le+g+p+r+++f++al+++y+t+  l+a++f
  CTQ29202.1 112 AGFPFNVSCDNLEGdVEPDRIAFQRRVHARVMTLLEQGIPERPARFIRALQHYYQTP-PLTAKHF 175
                 **************99****************************************9.8888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1346.80
//
Query:       CTQ29203.1  [L=269]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-43  147.0  30.2    8.2e-43  146.7  30.2    1.0  1  TauE      Sulfite exporter TauE/SafE


Domain annotation for each model (and alignments):
>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.7  30.2   4.6e-47   8.2e-43       1     236 []      18     253 ..      18     253 .. 0.97

  Alignments for each domain:
  == domain 1  score: 146.7 bits;  conditional E-value: 4.6e-47
        TauE   1 lllagllaGfvagllGiGggliavPlLll.llppavavatsllavvatslsgalahrrrgnvdwrlllllllgsliGallGallllllpsellkllfgv 98 
                 l+++++laGf+++l+G Gggl++vP+L++ ++ppa+a+at+ l ++ +sls++l + rr+ v++   +l +l+++iG+ +Gall++++ s++lk ++++
  CTQ29203.1  18 LFFVAILAGFIDSLAG-GGGLLTVPALMAaGMPPAQALATNKLQACGGSLSATLYFVRRKVVNLADQKLNILMTFIGSTAGALLVQHVQSDILKQILPL 115
                 6899************.************669******************************************************************* PP

        TauE  99 lllllallmllrkkrsrakgrerrptaillvligglvGllsGllGiGgGfllvpllllllglplkkavatslllilvislagalgyalagavdwpllll 197
                 l++ ++l++ll++k  +a++++r  ++++++++gg vG+++G++G G+G++ + +++ l g++l k++a + ll++++++ g+l ++++g v w ++++
  CTQ29203.1 116 LVIGIGLYFLLMPKLGEADRQRRLYGLPFALVAGGSVGFYDGFFGPGAGSFYALAFVTLAGFNLAKSTAHAKLLNATSNVGGLLLFIIGGKVIWATGFV 214
                 ***********9998777788899999989999888*************************************************************** PP

        TauE 198 llpgallGallGarlarrlsertlrrlfallllvlgvkl 236
                 +++g ++Ga  G+rl+    +  +r +++++ +v+++kl
  CTQ29203.1 215 MMAGQFIGARAGSRLVLSKGQSLIRPMIVIVSAVMSAKL 253
                 ******************9***************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1938.47
//
Query:       CTQ29204.1  [L=274]
Description: murein DD-endopeptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-95  318.8   0.0    2.5e-95  318.6   0.0    1.0  1  Peptidase_M74  Penicillin-insensitive murein endopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M74  Penicillin-insensitive murein endopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.6   0.0   1.4e-99   2.5e-95       1     239 []      36     270 ..      36     270 .. 0.96

  Alignments for each domain:
  == domain 1  score: 318.6 bits;  conditional E-value: 1.4e-99
                    EEEETTEEEEES-EE--S--SSEEES-GGG--BEE-HHHHHHHHHHHHHHHHTTS--EEE---B-TT----SSS-S--TTS-EEEEES---..... CS
  Peptidase_M74   1 siGsyakGClaGaealpeegegyqvmrlsrnrnyghpeliaflerlakkakkaglkgllvgDlsqprGGpmlsgHaSHqiGLDvDiwltlpaekre 96 
                    siG++++GC+ Gaealp++++gyqvmr++++r++ghp+l++f++rl+++++++g+ ++l+gD+++p+GG+++ gHaSHq+GLDvDi+l+lp  +++
     CTQ29204.1  36 SIGAFSNGCIVGAEALPLSAPGYQVMRTDQRRYFGHPDLVQFIQRLSNQVHNKGMGTVLIGDMGMPAGGRFNGGHASHQTGLDVDIFLQLP--QTR 129
                    69***************************************************************************************65..899 PP

                    --HHHHHS------B-TTSSSB-TTT--HHHHHHHHHHHHSTTEEEEEE-HHHHHHHHHHHTT--GGGGGEEE-SS-SSEEEEEE---TT-TTB-- CS
  Peptidase_M74  97 lseeereklsalslvkkdklkvdekkwteehaklirlaasdpeveRifvnpaiKkalCeeakgdrswLrkvrPwlgHdaHfHvRlkCpagskeCee 192
                    +++++  k +al+lv++d+++v ++ w+++  +li+laa+d+ev+RifvnpaiK++lC +a +dr+wLrkvrPw++H+aH+HvRl+Cpags eCe+
     CTQ29204.1 130 WTSSQLLKPQALDLVASDGKHVVPSLWSPQISQLIKLAAEDSEVTRIFVNPAIKQQLCLDAGSDRQWLRKVRPWFQHRAHMHVRLRCPAGSLECED 225
                    9*********************************************************************************************** PP

                    -----SS--TTHHHHHTT--------------....---HHHHHHHH CS
  Peptidase_M74 193 qapvpagdGCgeelaswlskealkpkkkkkkkkkkkelpaaCqavla 239
                    qap+p+gdGCg+el+sw+++   kp ++++ kk+++ lp +Cqa+l+
     CTQ29204.1 226 QAPPPPGDGCGAELQSWFEP--PKPGSTPPVKKTPPPLPPSCQALLD 270
                    *******************9..444444666666689*******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2136.10
//
Query:       CTQ29205.1  [L=361]
Description: chorismate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-141  471.4   0.0   1.2e-141  471.2   0.0    1.0  1  Chorismate_synt  Chorismate synthase


Domain annotation for each model (and alignments):
>> Chorismate_synt  Chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  471.2   0.0  6.6e-146  1.2e-141       1     327 []      10     345 ..      10     345 .. 0.98

  Alignments for each domain:
  == domain 1  score: 471.2 bits;  conditional E-value: 6.6e-146
                      SEEEEE-SCCSSEEEEEEE---BT-B--HHHHHHHHHHHTCTSSSSSSHHHCS-EEEEESSEETTEE-SS-EEEEEE-TTS-..SSSSSTSBE- CS
  Chorismate_synt   1 lrvttfGeShgkalgavidgvpagleldeediqkeLdrRrpgqsklttqrkEkDeveilsGvfegktlGtpiallieNkdqrskdyeeikevpR 94 
                      +rvttfGeShg alg+++dgvp+g++l+e+d+q++LdrRrpg+s++ttqr+E D+v+ilsGvfeg+t+Gt+i llieN+dqrs+dy  ik+ +R
       CTQ29205.1  10 FRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYGAIKDLFR 103
                      89******************************************************************************************** PP

                      TTSTCHHHHHHC-S.STHCCCCCTHHCHHHHHHHHHHHHHHHHT.TTEEEEEEEEEETTE.......CHHHHHTT-BS-CCCHHHHHHHHHHHH CS
  Chorismate_synt  95 pgHADltyalkYgirdlrgggrsSaReTaarvaaGavakklLke.lgieivayvssigei.......ekeaenpvrcpdeeaaeemeeaieeak 180
                      pgHAD+ty++kYg rd+rgggrsSaReTa+rvaaGa+akk+L++ +gi i+++++++g+i       ++ ++np++cpd+++ +++ e+++ +k
       CTQ29205.1 104 PGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAAkFGIVIRGCLTQMGDIplaikdwDQVEQNPFFCPDPDKIDALDELMRGLK 197
                      ******************************************9879************888888776555889********************* PP

                      HTT--B-EEEEEEEES--TT-SBTTTB-HHHHHHHHHHTSTTEEEEEETTGGGGGGSBHHHHS--EEEE..SS-TTTTEETTEEBSS-EEEEEE CS
  Chorismate_synt 181 kegdslGgvvevvvkgvpaGlGepvfdkldakLakalmsipAvkgveiGsGfeaaelkGseanDeivlr..ktnnaGGieGGisnGepivvrva 272
                      kegds+G+ v+vv+ gvp+GlGepvfd+lda++a+almsi+AvkgveiG+Gfe+++l+Gse++Dei+    ++n+aGGi+GGis+G++iv+++a
       CTQ29205.1 198 KEGDSIGAKVTVVADGVPPGLGEPVFDRLDADIAHALMSINAVKGVEIGDGFEVVKLRGSENRDEITKAgfQSNHAGGILGGISSGQQIVANIA 291
                      *******************************************************************4478*********************** PP

                      E--SS--SSEEEEEBTTS-E-EEEE--S-S-S-THHHHHHHHHHHHHHHHHHHHH CS
  Chorismate_synt 273 vKpipsiakeqktvdletkeevelevkgrhDpcvvpravvvveamvalvladall 327
                      +Kp++si+ + +t++  ++e ve+ +kgrhDpcv +rav+++eam+a+vl+d+++
       CTQ29205.1 292 LKPTSSITVPGHTINRFGEE-VEMITKGRHDPCVGIRAVPIAEAMLAIVLMDHFM 345
                      ********************.*******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2924.62
//
Query:       CTQ29206.1  [L=334]
Description: N5-glutamine methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-17   63.0   0.0    3.1e-16   59.4   0.0    2.1  2  MTS              Methyltransferase small domain
    1.5e-13   50.8   0.0    2.6e-13   50.0   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    7.2e-10   39.4   0.0    1.6e-09   38.4   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    8.5e-08   31.9   0.0    1.2e-07   31.4   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    1.4e-07   31.2   0.0    2.2e-07   30.6   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
      1e-05   25.3   0.0    1.8e-05   24.5   0.0    1.3  1  Cons_hypoth95    Conserved hypothetical protein 95
    0.00012   21.9   0.0    0.00019   21.2   0.0    1.3  1  Met_10           Met-10+ like-protein
    0.00025   20.8   0.4    0.00093   18.9   0.4    1.8  1  UPF0020          Putative RNA methylase family UPF0020
    0.00039   19.8   0.0    0.00063   19.1   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0004   20.3   0.0    0.00073   19.5   0.0    1.4  1  Methyltransf_18  Methyltransferase domain
    0.00043   21.0   0.0     0.0023   18.6   0.0    2.1  2  Methyltransf_12  Methyltransferase domain
     0.0023   17.8   0.0     0.0073   16.2   0.0    1.8  1  Methyltransf_23  Methyltransferase domain
     0.0037   17.9   0.0      0.011   16.3   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
     0.0063   15.8   0.0       0.01   15.2   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
  ------ inclusion threshold ------
      0.034   13.4   0.0      0.069   12.4   0.0    1.5  1  N6_Mtase         N-6 DNA Methylase
      0.038   15.0   0.1        0.2   12.7   0.0    2.1  1  Methyltransf_24  Methyltransferase domain
      0.043   13.6   0.0       0.07   12.9   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
      0.049   12.9   0.0      0.082   12.2   0.0    1.3  1  Rsm22            Mitochondrial small ribosomal subunit Rsm22
      0.074   12.4   0.0       0.12   11.7   0.0    1.2  1  Methyltransf_10  RNA methyltransferase
      0.087   13.4   0.2       0.69   10.5   0.2    2.4  1  PrmC_N           PrmC N-terminal domain
       0.21   11.1   0.0       0.48    9.9   0.0    1.6  1  Methyltransf_4   Putative methyltransferase


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   3.6e-19   3.1e-16      31     112 ..     156     239 ..     147     246 .. 0.91
   2 ?    1.1   0.0       0.3   2.5e+02     115     138 ..     262     286 ..     256     296 .. 0.81

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 3.6e-19
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTSTTS-EEEEEE---STTTCH CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvleeveekkfdlivsNPPfhagka 112
                 + +++lD+++G G +++a+a + peaev++vd++  Al++a++n+e+++l   v+ + sd++ ++++ ++dliv+NPP+ ++++
  CTQ29206.1 156 KPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEHNVESHGLIhhVTPIRSDLFRDLPKLQYDLIVTNPPYVDEED 239
                 5578*********************************************986788899********************998876 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.3
                 HHHHHHHHHHHHHHEEEEEEEEE.E CS
         MTS 115 lavaeeliaeAkeaLkegGeLli.V 138
                 l+++++++ +A+++L+++G L++ V
  CTQ29206.1 262 LKLTRRILGNAPDYLSDDGILICeV 286
                 57899**************998744 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   3.1e-16   2.6e-13       2     119 ..     155     294 ..     154     321 .. 0.87

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 3.1e-16
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.leklledekfDlilsn............ 81 
                      +k  ++lD  +G+G ++++ a  ++p+aev  +Dis++a+ +A+ n +++gl   v+  ++d +  l+k     ++Dli++n            
       CTQ29206.1 155 HKPQHILDMCTGSGCIAIACA-YAFPEAEVDAVDISPDALAVAEHNVESHGLIhHVTPIRSDLFRdLPK----LQYDLIVTNppyvdeedmadl 243
                      56779****************.99*****************************9***********9**7....57*******999999999888 PP

  Methyltransf_31  82 .......evl.......naladpdkileeiervlkpggilliedprllaelp 119
                               +       + l+    il++++++l+++gil++e  + +  l 
       CTQ29206.1 244 peeyeheP-VlglasgsDGLKLTRRILGNAPDYLSDDGILICEVGNSMVHLM 294
                      88888852.2466788899999999999**************9999333333 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   1.8e-12   1.6e-09       1      84 [.     160     242 ..     160     248 .. 0.90

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.8e-12
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBC.CGBSSSTTTEEEEEEESTGGGSSHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgda.edlpfedgsfDlvvssgalhhlsdedlek 84 
                      +Ld+++G+G +++a+a ++++a+v +vDis+++l+ a++++e++gl  +v+ ++ d+ +dlp    ++Dl+v +    ++++ed+++
       CTQ29206.1 160 ILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEHNVESHGLihHVTPIRSDLfRDLPKL--QYDLIVTN--PPYVDEEDMAD 242
                      8******************99***********************************98999965..6*****95..46777777665 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.5e-10   1.2e-07     160     233 ..     155     231 ..     148     232 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.5e-10
        PrmA 160 kegeevlDvGtGSGiLaiaaa.kLgakkvvavDiDevAvkvakeNaelNkveaklev...alseellkeekadvivaN 233
                 ++ +++lD+ tGSG +aia a  +  ++v avDi + A+ va++N+e  ++ ++++     l ++l+k  ++d+iv N
  CTQ29206.1 155 HKPQHILDMCTGSGCIAIACAyAFPEAEVDAVDISPDALAVAEHNVESHGLIHHVTPirsDLFRDLPK-LQYDLIVTN 231
                 56689*************965268999********************997777653312246777778.99*****99 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   2.6e-10   2.2e-07       3      80 ..     159     233 ..     157     243 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.6e-10
  Methyltransf_15   3 vilDlfsGaGGnviqfalvfe..kviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvflSpP 80 
                       ilD+++G+G  +i+ a  f+  +v a++i+++ la+a+hN e+ g  +++t++  d+f  l k     +++dl+++ pP
       CTQ29206.1 159 HILDMCTGSGCIAIACAYAFPeaEVDAVDISPDALAVAEHNVESHGLIHHVTPIRSDLFRDLPK-----LQYDLIVTNPP 233
                      69****************9963369*********************************998776.....45677777777 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.1e-08   1.8e-05      41     132 ..     156     243 ..     142     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.1e-08
                    CC-EEEETT-TTSHHHHHHH.HTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHH CS
  Cons_hypoth95  41 egarvLDlfaGsGalglEAl.SRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakellieev 132
                    + +++LD++ GsG +++ ++     +++ +v+ ++ a+++ ++n+e+ +l ++++ ++ d +++l+kl     ++d++  +PPy +e+ + ++
     CTQ29206.1 156 KPQHILDMCTGSGCIAIACAyAFPEAEVDAVDISPDALAVAEHNVESHGLIHHVTPIRSDLFRDLPKL-----QYDLIVTNPPYVDEEDMADL 243
                    56799***********9755156678999*********************999************999.....79*********999765554 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.2e-07   0.00019     101     178 ..     157     234 ..     147     253 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.2e-07
                 T-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EEEEEE--TT CS
      Met_10 101 gevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqladrvvmnlpk 178
                  + ++d+  G G  ai++a    + +v a+d+ P++    ++n++   + + v+pi +D    +++ + d +v n p+
  CTQ29206.1 157 PQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEHNVESHGLIHHVTPIRSDLFRDLPKLQYDLIVTNPPY 234
                 5789***************8888899*********************************8665678888888888765 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.4   1.1e-06   0.00093      75     132 ..     179     235 ..     151     241 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.1e-06
                 HH--EEEEES-HHHHHHHHHHHHHTT-GGGEE.EEE--GGG--STTS---EEEE----- CS
     UPF0020  75 aelklygsDldrrvvqgareNaekagvgdlie.fsqadaakLrlkegevdvivtnpPYG 132
                 +e+++ ++D+ + +++ a+ N e+ g+ + ++ +++  +++L+  + ++d+ivtnpPY 
  CTQ29206.1 179 PEAEVDAVDISPDALAVAEHNVESHGLIHHVTpIRSDLFRDLP--KLQYDLIVTNPPYV 235
                 5666889*******************98888725566689999..557**********5 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   7.4e-07   0.00063      46      98 ..     155     206 ..     146     220 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 7.4e-07
                      --TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS CS
  Ubie_methyltran  46 krgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki 98 
                      ++++++lD+++G+g +a++ + +   + +v+ +Di+++ L v+e+ ++ +g i
       CTQ29206.1 155 HKPQHILDMCTGSGCIAIACAYA-FPEAEVDAVDISPDALAVAEHNVESHGLI 206
                      6899**************98865.57789*******************99986 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   8.5e-07   0.00073      11      87 ..     152     229 ..     147     231 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 8.5e-07
  Methyltransf_18  11 lvekgs.rvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklkeeevdtvv 87 
                      l++++  +++D +t  g ++i+ +      +v a+Di++ +l+ a++n+e++gl ++++ + sd +  l + ++d +v
       CTQ29206.1 152 LINHKPqHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEHNVESHGLIHHVTPIRSDLFRDLPKLQYDLIV 229
                      56654449******************************************************9999999776788776 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.7e-06    0.0023       1      72 [.     161     230 ..     161     233 .. 0.81
   2 ?   -1.2   0.0       4.1   3.5e+03       5      29 ..     284     308 ..     283     323 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.7e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvva 72 
                      L+  +G+G ++ a++ ++p++e+ +vDisp+a+ + +e+  + ++   ++v+    dl+ + ++ ++Dl+v 
       CTQ29206.1 161 LDMCTGSGCIAIACAYAFPEAEVDAVDISPDAL-AVAEHNVESHG-LIHHVTPIRSDLFRDLPKLQYDLIVT 230
                      67889****************************.44444444443.5678888888888888888*****96 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 4.1
  Methyltransf_12   5 cGtGsllralleklpdieytgvDis 29 
                      c +G+ + +l e+ pd+ +t+++++
       CTQ29206.1 284 CEVGNSMVHLMEQYPDVPFTWLEFD 308
                      8889999999999999999999986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.5e-06    0.0073      20      89 ..     154     231 ..     136     327 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.5e-06
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae...kakkaqkdqfdeqeaae...pqgkfdlIvlr 89 
                      + +++ +Ld+ +G+G  +  +++ +   +v++vD+sp a + ae   + +  +++ ++  ++ +   p+ ++dlIv +
       CTQ29206.1 154 NHKPQHILDMCTGSGCIAIACAYAFPeaEVDAVDISPDALAVAEhnvESHGLIHHVTPIRSDLFrdlPKLQYDLIVTN 231
                      788999*********77777766665579*********9999987774444555555333333344466688888876 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.3e-05     0.011       1      67 [.     161     230 ..     161     242 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.3e-05
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvs 67 
                      Ld+ +G+G +a a+a ++  a+v +vD+s+ +l++a+++++  gl  +v+ +++d+ +  +++ ++Dl+v 
       CTQ29206.1 161 LDMCTGSGCIAIACAYAFpeAEVDAVDISPDALAVAEHNVESHGLihHVTPIRSDLFR-DLPKLQYDLIVT 230
                      7888899999999996669************************999888888888886.788888999886 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-05      0.01      64     131 ..     158     228 ..     144     239 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.2e-05
                     SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-.HHHHHHHHHHS.-----TTEEEEES-TTTS---..--SEE CS
  Methyltransf_2  64 kslvDvGGGtGalakaivsayPtikvivfDl.peVveaAkehl.sageeervefvgGdffkdslP..eaDai 131
                     ++++D+  G+G +a a++ a+P+ +v   D+ p+  + A++ + s g+ ++v+ +  d+f   lP  + D+i
      CTQ29206.1 158 QHILDMCTGSGCIAIACAYAFPEAEVDAVDIsPDALAVAEHNVeSHGLIHHVTPIRSDLF-RDLPklQYDLI 228
                     5799**************************9789999999999889999***********.78994445555 PP

>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.1e-05     0.069      39     138 ..     150     237 ..     139     253 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.1e-05
    N6_Mtase  39 vellepksgesvyDpacGsggllvqaekvlkeedgktkelsiyGqeknettyrLakmNlllhgieykkvkirlgdtlekpkfekdkkfdvvvaNppfnq 137
                 + l++ k+++ ++D++ Gsg + +  +  +        e ++  +++ + + ++a+ N+  hg   +      +  l ++  +   + d +v+Npp+ +
  CTQ29206.1 150 AGLINHKPQH-ILDMCTGSGCIAIACAYAFP-------EAEVDAVDISPDALAVAEHNVESHGLIHHV-TPIRS-DLFRDLPK--LQYDLIVTNPPYVD 236
                 5567888886.**********9998888774.......444555788999999***999999998884.33333.46667766..78**********88 PP

    N6_Mtase 138 k 138
                 +
  CTQ29206.1 237 E 237
                 7 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00023       0.2       4      89 ..     166     244 ..     164     249 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00023
  Methyltransf_24   4 GvysGvstlwllralrrngagrlvavdhdpg.aeeaaalareaglddrvrlikadseealaslaagsiDllfiDgghaaeavledle 89 
                      G  sG  ++++++a+ +++   + avd  p+  + a+ +++++gl ++v+ i++d++  l++l+   +Dl++   + + e+ ++dl+
       CTQ29206.1 166 G--SGCIAIACAYAFPEAE---VDAVDISPDaLAVAEHNVESHGLIHHVTPIRSDLFRDLPKLQ---YDLIVTNPPYVDEEDMADLP 244
                      4..6777777777777776...68888888423334455556**********************...99999887777777777765 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   8.2e-05      0.07      44     102 ..     154     211 ..     139     243 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.2e-05
  Methyltransf_16  44 elsklsvlELGsGtGlvGlavaellpeakviltDlee.llellkknielnknalkskvkv 102
                      + +++++l++  G+G + +a a + pea+v   D++  +l + ++n+e   + l ++v+ 
       CTQ29206.1 154 NHKPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPdALAVAEHNVES--HGLIHHVTP 211
                      77899*****************************9765**********9..556666654 PP

>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.6e-05     0.082      32     107 ..     154     228 ..     144     239 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.6e-05
       Rsm22  32 dflPkslldvgegpgtalwaaselweeleevlvidaseelleiskelaadapelkeaa.lrrsvirealeleeadLv 107
                 +++P+++ld+  g g   +a    ++e  ev  +d s ++l+++++ +++   +++++  r+++ r++ +l+++ L+
  CTQ29206.1 154 NHKPQHILDMCTGSGCIAIACAYAFPEA-EVDAVDISPDALAVAEHNVESHGLIHHVTpIRSDLFRDLPKLQYD-LI 228
                 789*************999999999975.6899***********998888888877652677788777777664.44 PP

>> Methyltransf_10  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014      0.12     103     194 ..     157     241 ..     136     255 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00014
                      --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT.T-TTTEEEEE--TT-SCCHHSSTTSS-EEEEEE-S---SS---- CS
  Methyltransf_10 103 qvraldiGvGanCiyPllGvteyGWrfvgsevddvslasakaivesnsklsdaiklrkqkekkaifdglieenerydvtlCnPPfhaslaea 194
                       +++ld+ +G+ Ci           +  + ++++ +la a+++ves   l +++     + ++ +f  l +   +yd+ + nPP+ ++ + a
       CTQ29206.1 157 PQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEHNVESH-GLIHHV----TPIRSDLFRDLPK--LQYDLIVTNPPYVDEEDMA 241
                      5689**********876666666667777788888888888888887.444443....4667889999875..48**********9998877 PP

>> PrmC_N  PrmC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2    0.0008      0.69       3      70 ..      44     118 ..      42     118 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0008
      PrmC_N   3 LreaearLkaagi......eeaeldAelLlahvlglsrsdll..lrgerelteeqlerfeelierRaarePlqyIl 70 
                 Lr+a +r++aa+i      +++  +A  L+  +l l   d+   +r  r  ++e+ + +e++i+r  +r+P++y++
  CTQ29206.1  44 LRWAVSRFSAANIwyghgtDNPWDEAVQLVLPSLYLPL-DIPedMRTARLTSSEKHRIVERVIRRVNERIPVAYLT 118
                 66666666666544444546666666666666664432.233223333444566666788888888********98 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00056      0.48       4      50 ..     159     205 ..     156     226 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00056
                     EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTT CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealel 50 
                      +l++++G+G + +a A ++P+ ++ +++i+ + +a + +++e ++l
      CTQ29206.1 159 HILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEHNVESHGL 205
                     579*******************************9999999998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2617.53
//
Query:       CTQ29207.1  [L=183]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-17   63.3   0.1    3.5e-17   62.5   0.1    1.4  1  Smr       Smr domain


Domain annotation for each model (and alignments):
>> Smr  Smr domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.1   1.9e-21   3.5e-17       1      79 [.      98     172 ..      98     173 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 1.9e-21
                 EE-TT--HHHHHHHHHHHHHHHHHTT-SEEEEE--STTSTTHCHHHHHHHHHHHCSTTEEEEEE--CCCTGGGEEEEEE CS
         Smr   1 lDLhglrraealnvletfldaasakglrsvevihGkGahagvgvLrpavmgwLagkeaveafreaekkeGgkGavvVlL 79 
                 lDLhgl++++a+++l   ++a++++++ +  v+hG+G+     +L+++ + wLa+++++ af++a+k+ Gg+ a+++l+
  CTQ29207.1  98 LDLHGLTQQQAKQELGALIAACRREHVFCACVMHGHGK----HILKQQTPLWLAQHPHIMAFHQAPKEYGGDAALLILI 172
                 8*************************************....8*******************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1374.47
//
Query:       CTQ29208.1  [L=161]
Description: phosphohistidine phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-08   33.2   0.0    7.8e-07   29.0   0.0    2.0  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   4.3e-11   7.8e-07       1      73 [.       3      73 ..       3      80 .. 0.88
   2 !    2.3   0.0    0.0066   1.2e+02     130     169 ..      92     128 ..      87     148 .. 0.63

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 4.3e-11
                EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTT..S---EEEE-SSHHHHHHHHHHHHCTT--EEE CS
  His_Phos_1  1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlag..epidaiysSplkRarqTaeliaealglpvel 73
                ++++RHG  +  a+      +  pLt  G  + +++a +l+g  ++i+++++Sp+ Ra qT  +++e ++lp ++
  CTQ29208.1  3 VFIMRHGDAALDAA----SDSVRPLTVCGCDESRQMATWLKGqkVDIERVLVSPYLRAEQTLDIVGECMNLPKHV 73
                579********999....89999*******************66777778****************999976554 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.0066
                 HHHHHHHTTTSEEEEEE-HHHHHHHHHHHH.T--GGGGGGB CS
  His_Phos_1 130 leelaarhegetvlvVsHggvirallarll.glpleelrrl 169
                 l++ +a+++  t+lvVsH  ++ +l+++l  g   e+++ +
  CTQ29208.1  92 LQA-LANEGVATALVVSHLPLVGYLVSELCpG---ETPPMF 128
                 444.44444557******99999999998743...333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1300.11
//
Query:       CTQ29209.1  [L=714]
Description: fused enoyl-CoA hydratase and epimerase and isomerase; 3-hydroxyacyl-CoA dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-57  193.9   0.0    3.7e-57  193.1   0.0    1.4  1  3HCDH_N   3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
    9.9e-43  146.3   0.1    1.9e-42  145.3   0.1    1.3  1  ECH_1     Enoyl-CoA hydratase/isomerase
    7.2e-35  119.5   0.0    1.1e-25   90.0   0.0    2.7  2  3HCDH     3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
    6.6e-28   98.2   0.0    6.6e-28   98.2   0.0    1.8  2  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.1   0.0   8.2e-61   3.7e-57       2     179 ..     311     489 ..     310     490 .. 0.99

  Alignments for each domain:
  == domain 1  score: 193.1 bits;  conditional E-value: 8.2e-61
                 EEEE--SCCHHHHHHHHHHT.T-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasa.gleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfae 99 
                 vav+G G+mG gia+v+a + gl+V++ di+++ +++al+   + l+k+v++++l   e+++++a is ttd++ +++ d+viEav+E+l+lK+++  e
  CTQ29209.1 311 VAVLGGGLMGGGIAYVTACKgGLPVRIKDIQPRGINHALKYSWDLLNKQVRQRRLRPVERDRQMALISGTTDYQGFAHRDVVIEAVFEDLALKQRMVSE 409
                 9*****************9989***************************************************************************** PP

                 HHCCS-TTSEEEE--SSS-HHHHCCCSSSGGGEEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT-EEEEECS CS
     3HCDH_N 100 lekiakpdailasnTSslsiselaealkrperviglHFfnPpplmkLvEvvrgekTseetvatvvelakkigktpvvvkd 179
                 +e++  p++i+asnTSsl+i ++a++ +rp +viglHFf+P+++m+LvEv++++ T+++t+atvv+lak+ gktp+vv d
  CTQ29209.1 410 VEQYGGPQTIFASNTSSLPIGDIAAHASRPGQVIGLHFFSPVEKMPLVEVIPHKGTDPQTIATVVQLAKRQGKTPIVVAD 489
                 ******************************************************************************87 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.1   4.2e-46   1.9e-42       4     187 ..      14     202 ..      12     211 .. 0.94

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 4.2e-46
                 TTEEEEEE--C.GCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEE.BTSEEEEEB-HHHHHHHHC.HHHHHHHCCHHHHHHHHHHSSSEEEEEE-SEE CS
       ECH_1   4 agvaviklnrP.eavNalsaelltEliqalekleddksvravvLtG.gdkaFaaGadlkemaeeek.akqallkeevlelwtklytvpkpviaavnGaa 99 
                 + +avi+++ P e++N+l+ae+   +   + +l+ddksvr+vv  +     F aGad++ +a+    ++++ l  + ++ + ++  +p+pviaa+ Ga+
  CTQ29209.1  14 DKIAVITIDAPgEKMNTLKAEFGSQVRGLIRQLRDDKSVRGVVFISaKADNFIAGADINMIARCRSaQEAEALARQGQQIMAEIHGLPIPVIAAIHGAC 112
                 579********889******************************99999************9987745566788999********************** PP

                 ETHHHHHHHHSSEEEEETTTE..EE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHH CS
       ECH_1 100 igGGlelalacDiviaadnas..fglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealela 187
                 +gGGlelalac  +i++d+ +   gl+e++lGl+pg+ggtq+l+r +G s A  ++l+gk++++  alk+Glvd+vvp++ ll+ a+ela
  CTQ29209.1 113 LGGGLELALACHGRICSDDEKtrLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMMLTGKQLRPRQALKAGLVDEVVPQAILLQAAVELA 202
                 ****************9866555****************************************************************998 PP

>> 3HCDH  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   2.5e-29   1.1e-25       1      97 []     492     586 ..     492     586 .. 0.99
   2 !   26.5   0.0   1.6e-09   7.3e-06       3      84 ..     619     703 ..     619     706 .. 0.92

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 2.5e-29
                 TTTHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHTTTHGGHH-HHHHHHHHTT--BGGGTBSSSBC CS
       3HCDH   1 GFvvnRvlapllneavrlveegvaspediDaamrlglGlpmGpfelldlvgldvakkilevlaeelgerayapsplleklveagrlgrktgkgfyky 97 
                 GF+vnR+lap++nea+rl+ eg   +e iD+a+ + +G+p+Gp++lld+vg+d+++ki+ vl++++ger + p+++++ +++ +r grk+ +gfy y
  CTQ29209.1 492 GFYVNRILAPYINEAMRLLVEG-EPIEVIDNALVK-FGFPVGPIQLLDEVGIDTGTKIIPVLESAFGERFSPPANIIDAILKDDRKGRKNNRGFYLY 586
                 9*********************.************.*********************************9999**********************77 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 1.6e-09
                 THHHHHHHHHHHHHHHHHTTSS.-HHHHHHHHHHHHHHS...SCHHHHHHHHHHHHHHHHHHHHHHHTTTHGGHH-HHHHHHHHTT CS
       3HCDH   3 vvnRvlapllneavrlveegva.spediDaamrlglGlp...mGpfelldlvgldvakkilevlaeelgerayapsplleklveag 84 
                 v+ R+++ +lnea r+++e+++ s++d D  +  g+G+p    Gpf+ +d++g + + +il+ la+++g r ++p++ l +++e+g
  CTQ29209.1 619 VAERCVMMMLNEAARCFDEQIIrSARDGDIGAVFGIGFPpflGGPFRYMDTIGAGEVAAILQRLAAQFGPR-FTPCDTLLRMAEQG 703
                 689*****************88468899***********8877************************9988.999*******9988 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0   1.5e-31   6.6e-28       2     184 ..      17     201 ..      16     254 .. 0.91
   2 ?   -1.8   0.8      0.38   1.7e+03      90     104 ..     310     324 ..     307     330 .. 0.84

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 1.5e-31
                 EEEEE--G.GGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEE CS
       ECH_2   2 gvitLnrp.kalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivm 99 
                 +vit++ p +++N L+ e  ++++  +++ ++d++v+ vv  +a+   f AG D++++++ ++++++e  ++ r+  ++ + i+ +p pv+a ++G ++
  CTQ29209.1  17 AVITIDAPgEKMNTLKAEFGSQVRGLIRQLRDDKSVRGVVFISAKADNFIAGADINMIARCRSAQEAE--ALARQGQQIMAEIHGLPIPVIAAIHGACL 113
                 68999999668*************************************************99997755..6**************************** PP

                 THHHHHHTTSSEEEE-..TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHH CS
       ECH_2 100 GgGvGlsvhgsfrvvt..ertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklealeeaL 184
                 GgG+ l++ ++ r+ +  e+t++  PE+++Gl P  Gg+  L+rl g +++l + lTG++l+ ++al+agl + +vp++ l + + +L
  CTQ29209.1 114 GGGLELALACHGRICSddEKTRLGLPEVQLGLLPGSGGTQRLPRLIGvSTALDMMLTGKQLRPRQALKAGLVDEVVPQAILLQAAVEL 201
                 ***99999888888874479*************************8879*****************************9885444444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.38
                 EEEEE-BEEETHHHH CS
       ECH_2  90 vvalmdGivmGgGvG 104
                  va++ G  mGgG++
  CTQ29209.1 310 SVAVLGGGLMGGGIA 324
                 5999*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4968.29
//
Query:       CTQ29210.1  [L=436]
Description: beta-ketoacyl-CoA thiolase, anaerobic, subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-60  202.5   0.3    1.1e-59  202.0   0.3    1.2  1  Thiolase_N     Thiolase, N-terminal domain
    8.1e-37  125.6   0.5    2.3e-36  124.2   0.1    1.9  2  Thiolase_C     Thiolase, C-terminal domain
    0.00069   19.3   6.3     0.0024   17.5   1.9    3.1  3  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.0   0.3   1.8e-63   1.1e-59       1     260 []      15     288 ..      15     288 .. 0.94

  Alignments for each domain:
  == domain 1  score: 202.0 bits;  conditional E-value: 1.8e-63
                 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsi 99 
                 ++iv++ rtp+ +  ++++ ++a +L++ ++ ++l++  +++e ++++++G+v+q  e  niar+++l +g++ ++ a  v ++c+ +++ava++a+s+
  CTQ29210.1  15 IAIVTGLRTPFARQATAFHGVPAIDLGKMVVGEMLARSDIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESL 113
                 68************************************************************************************************* PP

                 HTTSHSEEEEEEEEESTTS-EEETCTTT.............TGGSSSSEEEEEHHHHH..HTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHH CS
  Thiolase_N 100 aageadvvvagGvEsmsnaptaestdvr.............sglklgdekakdllipd..gladafneehmGltaenlakkykisReeqdefAvkshqk 183
                 +ag++ + +agG+ s s  p+ +s+++              ++lkl ++ +   l+p   ++a+ +++  mG tae++ak ++isRe+qd+ A +shq 
  CTQ29210.1 114 MAGTIRAGIAGGADSSSVLPIGVSKTLArtlvdankartlsQKLKLFSRLRPRDLLPVppAVAEYSTGLRMGDTAEQMAKSWGISREQQDALAHRSHQL 212
                 **********************99777789****99999998888877777666666667*************************************** PP

                 HHHHHHTTTTTTTBE-EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTT.SS-BTTSB--BEEEEEEEEEEEHH CS
  Thiolase_N 184 aaaaqkagkFkdeivPvkvkgkkgkktvdkdeairsevtaekLaklkpaFkke.GtvtAgnasqisDGaaavllmses 260
                 aa+a+++gk++ e++    +  +  + +++d+ ir+++t+   +kl+paF+ + GtvtA+n+ +++DGaaav+lm+es
  CTQ29210.1 213 AAKAWEEGKLSAEVMTAYAPPFR--EPLEQDNNIRKNSTLADYQKLRPAFDRKhGTVTAANSTPLTDGAAAVILMTES 288
                 **************444443333..78************************999*********************996 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.31   1.8e+03     101     121 ..      90     110 ..      68     143 .. 0.75
   2 !  124.2   0.1   3.8e-40   2.3e-36       2     122 ..     296     434 ..     295     435 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.31
                 TTSEEEEEEEETTTEEEEEEE CS
  Thiolase_C 101 ggklgvaalCigggqgvalvi 121
                    ++v+ +C+++ q+va v 
  CTQ29210.1  90 TDAYSVSRACATSFQAVANVA 110
                 455667777777777766654 PP

  == domain 2  score: 124.2 bits;  conditional E-value: 3.8e-40
                 --SEEEEEEEEEE--G.GGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G.................GGBSTT--HHHH-B-T CS
  Thiolase_C   2 kplakirsyaevgvdp.eilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl.................ekvNvnGGaialGHPl 82 
                 +pl+++rsya ++ d  +++ lgPa  ++ +l++aglt++d+ l++++EAFaaq+La+++ l +d                  +k+Nv GG+ia GHP+
  CTQ29210.1 296 RPLGYLRSYAFTAIDVwQDMLLGPAWSTPLALERAGLTLADLTLIDMHEAFAAQTLANLQCLASDRfarevlgrsqatgevdeSKFNVLGGSIAYGHPF 394
                 7999***********99********************************************************************************** PP

                 TTHHHHHHHHHHHHHHHCTTSEEEEEEEETTTEEEEEEEE CS
  Thiolase_C  83 GasGaRivvtllselkkeggklgvaalCigggqgvalvie 122
                  a+GaR++++ l+el+++gg +g++++C++gg g+a+++e
  CTQ29210.1 395 AATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMIVE 434
                 **************************************98 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.9     4e-07    0.0024     168     205 ..      92     129 ..      76     155 .. 0.86
   2 ?   -1.2   0.0       0.2   1.2e+03     232     253 .]     269     290 ..     251     290 .. 0.78
   3 ?    2.0   0.2     0.021   1.3e+02     138     181 ..     382     429 ..     304     435 .. 0.49

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4e-07
                    EEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE-- CS
  ketoacyl-synt 168 svtvdtACsSslvavhaavqslrsgeadvalaGGvell 205
                    +++v+ AC++s+ av+ + +sl++g + + +aGG++ +
     CTQ29210.1  92 AYSVSRACATSFQAVANVAESLMAGTIRAGIAGGADSS 129
                    789999******9999999****************964 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.2
                    TB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 232 kadGfvlGEGvGavvLkrleda 253
                    +a+ + l++G++av+L++++ a
     CTQ29210.1 269 AANSTPLTDGAAAVILMTESRA 290
                    457777899*****99998765 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.021
                    GGGSCTTHHHHHSTTHHHHHHHHH...HT--SSEEEEESGGGHH.HHH CS
  ketoacyl-synt 138 evkaspkavgavlanviagrisya...lglrGpsvtvdtACsSs.lva 181
                    +v + + a+g+  a++ a +i+++   l  rG  + ++tAC+++ l a
     CTQ29210.1 382 NVLGGSIAYGHPFAATGARMITQTlheLRRRGGGFGLVTACAAGgLGA 429
                    333333344445666666666666544777899999999999996655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3522.60
//
Query:       CTQ29211.1  [L=94]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-37  127.2   0.7    2.8e-37  127.1   0.7    1.0  1  DUF406    Protein of unknown function (DUF406)


Domain annotation for each model (and alignments):
>> DUF406  Protein of unknown function (DUF406)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.1   0.7   1.6e-41   2.8e-37       1      92 []       3      94 .]       3      94 .] 0.99

  Alignments for each domain:
  == domain 1  score: 127.1 bits;  conditional E-value: 1.6e-41
                .--SS-SSS-----SS-SS--STTEEEEEEE-SSHHHHHHHHHHHHHHHHHH.STT-.EEEE----TT-SEEEEEEE-SSHHHHHHHHHHHH CS
      DUF406  1 kekaeeeaagcavdvgtiidnsdcvaeveivaaseaeaeaalakltekAkavesepveisseieeaedgveLkarfkFscqAEklIFeLklR 92
                k++a e+  +c++dvgti+dn+dc+a++++v+a++aeae+++a+l ekA++vesep++i+ +++++++gv+L+++f Fsc+AE lIF+L+lR
  CTQ29211.1  3 KCSADETPVCCCIDVGTIVDNTDCTASYSRVFANRAEAEQTFAALSEKARNVESEPCQINPTFTDVDGGVQLDIDFVFSCEAESLIFQLGLR 94
                6999***************************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 820.99
//
Query:       CTQ29212.1  [L=440]
Description: long-chain fatty acid outer membrane transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.7e-147  491.5  13.9   1.9e-147  491.3  13.9    1.0  1  Toluene_X     Outer membrane protein transport protein (OMPP1
     0.0022   18.1   9.8       0.16   12.1   0.0    5.2  5  YadA_anchor   YadA-like membrane anchor domain
  ------ inclusion threshold ------
      0.014   15.4   5.6          3    7.7   2.7    4.0  2  DUF2490       Protein of unknown function (DUF2490)
      0.025   14.2   0.9      0.057   13.0   0.1    2.1  3  Glycoamylase  Putative glucoamylase


Domain annotation for each model (and alignments):
>> Toluene_X  Outer membrane protein transport protein (OMPP1/FadL/TodX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  491.3  13.9  4.3e-151  1.9e-147       2     434 .]      17     440 .]      16     440 .] 0.97

  Alignments for each domain:
  == domain 1  score: 491.3 bits;  conditional E-value: 4.3e-151
                 XXXXXXXXXXTTB--SS-HHHHHTTTTTTTTCTTSCCHHHCTGGGGGG-SS-EEEEEEEEEEEEEEEEEEECTTTC......--BST-SEEEEEEEEEE CS
   Toluene_X   2 vlvagqasaagfqlneqsasglgrAyaGeaaaaddasavvrNPAalalldeaelslglsyvrakvkvkgtagegqladtllegnggdaavtalvPnlyl 100
                 +lv++qa++agfqlne sasglgrAy+Ge+a+adda++++rNPA+++++d++++s+g+  v+++v+v+gt+++g+        +++++a+ta+vPn+++
  CTQ29212.1  17 ALVSTQAWSAGFQLNEFSASGLGRAYSGEGAIADDAGNASRNPALIMMFDRPTMSAGAVFVDPGVNVSGTSPTGKS------LKADNIAPTAWVPNFHF 109
                 799*************************************************************************......89*************** PP

                 EEESSSSEEEEEEEEECEEEEEE--TTSTTCCCTSEEEEEEEEEEEEEEEESSSSEEEEEEEEEEEEEEEEEEEETCHHHHHCSC.....CCHCCHHTT CS
   Toluene_X 101 vvpindkfafGlsvvapyglateydnsfaarslggetklqtlnlnlslaYrVndelsvGlgvdavhakgklsrllgllqqakeig.....gvaglniga 194
                 v+pind+f +G+s++++yglatey++ +aa+s+gg+t+l+t n+nls+aYr+  ++s+Glg+dav+ak+k++r++g l+q  +       ++ag ++ +
  CTQ29212.1 110 VAPINDQFGWGASITSNYGLATEYNDDYAAGSMGGKTDLTTANFNLSGAYRLDSNWSFGLGFDAVYAKAKIERYAGDLGQIVAGSgalppALAGQVAKI 208
                 ***************************************************************************98887776334777899999999* PP

                 TTTEEEEEEEEEEEEEEEEEEEEEECCTTEEEEEEEE--EEEEEEEEEEECC-CCCCCCCCC..CHHHSTT-EEEEEEEEEE-EEEEEEEEEEECTTEE CS
   Toluene_X 195 ssadnlsklkgddlsvGfnlGvlyeltddtrlGlaYrskvkvklkgkyevsavsgaaglvta..vggaalglkakgkltltlPasaelsvvhklndqwa 291
                 +  +++++l+g+++++G+n+G+lyel++++r+Gl+Yrs+vk++++g+y++s  ++ ++ + +  + + ++g++++g+ltl+lP+++els+++++  qwa
  CTQ29212.1 209 PADTQIAHLNGNAWGFGWNAGILYELDKNNRYGLTYRSEVKIDFDGNYRSSLPAAYNQILGNfgLPAGTSGQTTNGSLTLNLPEMWELSGYNRVAPQWA 307
                 **************************************************9999988877668888889****************************** PP

                 EEEEEEEEEGGG-SEEEEEECCCCTEEEEEEE---EEEEEEEEEEEEESSSSEEEEEEEEEEE-SS-CCC-BSSS--SSEEEEEEEEEEESSSSEEEEE CS
   Toluene_X 292 lhaslkwtgWSsfkeltaviakskgntslskpenYrDtwsfalGteYrvndkltLRaGvaYdqsaipdekrdirvPdgdrtllslGltYaitkdltiDv 390
                 +h+sl++t+WS+f+el+a+ ++++  t++ k+e+++D++++alGt+Y+++d++t+R+G+a+d+s++p+++r+i++Pd+dr +ls+G+tYa++kd+++Dv
  CTQ29212.1 308 VHYSLTYTSWSQFQELKATGSNGQ--TLFYKEEGFKDAYRLALGTTYYYDDNWTFRTGIAFDDSPVPANNRSISIPDQDRLWLSAGTTYAFNKDASVDV 404
                 ****************88888776..************************************************************************* PP

                 EEEEEEEEEEEEEEB..GGGTSTCEEEEEEEEEEEEEEEEEEES CS
   Toluene_X 391 gfsylvvkkakiaeqnagsdlasaldgdveakavllalqanyrF 434
                 g+sy+++++++i+e        + +++++e+ a+l+++++nyrF
  CTQ29212.1 405 GVSYMHGQHVEIKE--------GPYTFRSEGTAWLYGANFNYRF 440
                 **************........89*******************9 PP

>> YadA_anchor  YadA-like membrane anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.9     0.021        95      21      49 ..       9      37 ..       8      43 .. 0.85
   2 ?   -1.4   0.1      0.58   2.6e+03      37      53 ..     152     168 ..     124     172 .. 0.53
   3 ?   -2.4   0.0       1.2   5.3e+03      47      58 ..     221     232 ..     207     233 .. 0.74
   4 !   12.1   0.0   3.6e-05      0.16      17      47 ..     339     369 ..     339     380 .. 0.86
   5 ?    4.0   0.1     0.012        55      33      58 ..     383     408 ..     378     410 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.021
  YadA_anchor 21 qsAvAvGasarsngnlvvklgvavssggs 49
                 qsA+Av ++ +s++ + + ++ + +s+++
   CTQ29212.1  9 QSALAVAVALVSTQAWSAGFQLNEFSASG 37
                 89**************9998888766655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.58
  YadA_anchor  37 vvklgvavssggsvggg 53 
                   ++l++a+   +++++g
   CTQ29212.1 152 NFNLSGAYRLDSNWSFG 168
                  34555555333333333 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.2
  YadA_anchor  47 ggsvgggvGvgy 58 
                  + ++g+++G+ y
   CTQ29212.1 221 AWGFGWNAGILY 232
                  556889999877 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 3.6e-05
  YadA_anchor  17 gYkgqsAvAvGasarsngnlvvklgvavssg 47 
                  g+k+++ +A+G ++  ++n+++++g+a++++
   CTQ29212.1 339 GFKDAYRLALGTTYYYDDNWTFRTGIAFDDS 369
                  57888889*******************7554 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.012
  YadA_anchor  33 ngnlvvklgvavssggsvgggvGvgy 58 
                   ++l +++g ++  +++ ++ vGv+y
   CTQ29212.1 383 QDRLWLSAGTTYAFNKDASVDVGVSY 408
                  6899999*****9***********99 PP

>> DUF2490  Protein of unknown function (DUF2490)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.035   1.6e+02      33      59 ..     147     173 ..     113     187 .. 0.78
   2 ?    7.7   2.7   0.00067         3     142     177 ..     374     410 ..     220     419 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.035
     DUF2490  33 efnqillrpglgyklnkklsvslgyay 59 
                 +++   +  ++ y+l +++s++lg+ +
  CTQ29212.1 147 DLTTANFNLSGAYRLDSNWSFGLGFDA 173
                 555666788999**********99987 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00067
     DUF2490 142 nk.sargngfdqnRlyaglgyklnkkltlelgYmnqf 177
                 n+ s++  + d+ +l+ag++y +nk  ++++g  + +
  CTQ29212.1 374 NNrSISIPDQDRLWLSAGTTYAFNKDASVDVGVSYMH 410
                 4445555566777777777777777777777766655 PP

>> Glycoamylase  Putative glucoamylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.92   4.1e+03      72      95 ..     114     139 ..     109     150 .. 0.57
   2 ?   13.0   0.1   1.3e-05     0.057     138     201 ..     302     371 ..     235     387 .. 0.86
   3 ?   -2.1   0.0      0.53   2.4e+03     167     200 ..     383     420 ..     375     424 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.92
  Glycoamylase  72 qdky..gvdYfensrratlaqreYae 95 
                   +d++  g +   n+  at+ + +Ya+
    CTQ29212.1 114 NDQFgwGASITSNYGLATEYNDDYAA 139
                   45554444455555555555555554 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.3e-05
  Glycoamylase 138 tisPtaalsslpfapeealaalrelykelkdqllgrygfydafnpte......kegwvakrylgidqGpi 201
                   +   +a+  sl ++     + l+   ++ +   +++ gf+da+ +        +++w+ ++ ++ d  p+
    CTQ29212.1 302 VAPQWAVHYSLTYTSWSQFQELKATGSNGQTLFYKEEGFKDAYRLALgttyyyDDNWTFRTGIAFDDSPV 371
                   444599********************9999999************888999***************9887 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.53
  Glycoamylase 167 kdqllgrygfydafnpte....kegwvakrylgidqGp 200
                   +d+l+ ++g   afn++        ++  +++ i +Gp
    CTQ29212.1 383 QDRLWLSAGTTYAFNKDAsvdvGVSYMHGQHVEIKEGP 420
                   68999999999999997755554455556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3460.21
//
Query:       CTQ29213.1  [L=253]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-67  226.4   0.0    3.2e-67  226.0   0.0    1.0  1  MlaA      MlaA lipoprotein


Domain annotation for each model (and alignments):
>> MlaA  MlaA lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.0   0.0   1.8e-71   3.2e-67       2     193 ..      31     224 ..      30     225 .. 0.96

  Alignments for each domain:
  == domain 1  score: 226.0 bits;  conditional E-value: 1.8e-71
        MlaA   2 kDplegfNRavfkfN.dkldkyvlkPvakgYrkvvPepvrtgvsnffsNlsepvsvvnnlLqgkfkkavkelgRfliNttlGlgGlfDvaskl..glek 97 
                 +DplegfNR++f+fN +++d yvl+Pva ++r++vP+p+r+g+snf+sNl+ep+ +vn +Lqg++ k +++++Rf++Nt+lG+gGl+Dva ++  +l++
  CTQ29213.1  31 SDPLEGFNRTMFNFNfNVVDPYVLRPVAVAWRDYVPQPARNGLSNFTSNLEEPAVMVNYFLQGDPYKGMVHFTRFFLNTILGMGGLIDVAGMAnpQLQR 129
                 7*****************************************************************************************875457888 PP

        MlaA  98 .kkedfgqTLgvwgvgeGpYlvlPllGpstlRdavglvvdilldpvlsaeeaevslaltaleavdkraklldaeklleeasldpYafvRdaylqrre 193
                  + + fg+TLg++gvg GpY+ lP++G+ tlRd  g ++d  l+pvls+ ++ +s++++a+e++++ra+lld++ ll ++s dpY+++R+ay+qr++
  CTQ29213.1 130 vEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRDEGGDMADG-LYPVLSWLTWPMSIGKWAVEGIETRAQLLDSDGLL-RQSSDPYILMREAYFQRHD 224
                 566**************************************.6777999****************************.99**************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2054.63
//
Query:       CTQ29214.1  [L=309]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-41  142.4  15.9    1.6e-41  142.2  15.9    1.0  1  Form_Nir_trans  Formate/nitrite transporter


Domain annotation for each model (and alignments):
>> Form_Nir_trans  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2  15.9   8.7e-46   1.6e-41       2     234 ..      43     279 ..      42     281 .. 0.93

  Alignments for each domain:
  == domain 1  score: 142.2 bits;  conditional E-value: 8.7e-46
                     HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCTTCHHHHHHHHHCCCHHHHHHHHHT---CCCCCCHHHHHHC..TTSSS CS
  Form_Nir_trans   2 ivekvvaagvkkaklsldklfllgilAGafigfgvllalvvaaalaesnpglakllgglvFpvGlilvvllgaeLfTgntllltlavl..kkkvs 94 
                     i+e + ++g+k++++++ +l++++i+AG+ +g + l+  +++ +l+  + g   ll  l +++G+i+v++++++LfT+nt++++l+v+      +
      CTQ29214.1  43 IHEHIRQEGEKEMERDALALLWSAIAAGLSMGASLLAKGIFHVKLEGIPGG--FLLENLGYTFGFIIVIMARQQLFTENTVTAVLPVMhnPTLGN 135
                     678899**************************************9766755..59*********************************5444468 PP

                     CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTG...GHHHHHHHHHCCCSS-HHHHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHH CS
  Form_Nir_trans  95 lkkllknwlvvllgNliGsllvalllvvlsgl...laekllsiaeaklslsfleaflrGilCNwlVclavwlalaakdvigkilaiflpifafva 186
                     ++ l+++w vvl+gNliG+++ a+++ ++  +   ++++++siae+ +++s +e+f+++i+ +wlV+++vw+   a    +ki++i+l+++++++
      CTQ29214.1 136 VGLLMRLWSVVLAGNLIGTAVAAWAFNYMPIFdepTRQAFVSIAEDVMKNSPTEMFANAIISGWLVATMVWMFPVAGA--AKIVVIILMTWLIAL 228
                     99*********************9988776655545***************************************976..*************** PP

                     CT---HHHHHHHHHHHHHH...SHHHHHHHCHHHHHHHHHHHHHCCHHHHH CS
  Form_Nir_trans 187 sgfeHsvanmfliplglll...tvadfilknlipvtlGNivGGallvglly 234
                     + ++H+v+ ++ i + ++     ++dfi+   +p++ GNi GG+++++ll 
      CTQ29214.1 229 ADTTHIVVGSVEILYLVFNgnlPWSDFIWPFALPTLAGNICGGTFIFALLS 279
                     *****************988889***********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1008  (0.0562218); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2530.28
//
Query:       CTQ29215.1  [L=160]
Description: Tryptophan synthase beta chain like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00014   21.5   0.1    0.00029   20.5   0.1    1.6  1  Cupin_2   Cupin domain
  ------ inclusion threshold ------
       0.11   12.2   0.0       0.16   11.7   0.0    1.2  1  FdtA      WxcM-like, C-terminal


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   3.3e-08   0.00029       4      58 ..      42     103 ..      40     114 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.3e-08
                 EEETTEEEEEECSSSEEEEEEEEESEEEEE.ECTE.....EEEEETTE.EEEE-TT-EEEEE CS
     Cupin_2   4 elppGesapshrHpgedeffyVleGegelt.vdge.....eveleaGd.svyfpagtpHrfr 58 
                  ++pG+ + +hrH+++ e++  l+G++++   d++     +v+l++ + ++  +agt+H++ 
  CTQ29215.1  42 AMEPGTYIRPHRHRHTFELLLPLKGRFVVLnFDDHgvvtnRVVLGDTCtALEMEAGTWHTVL 103
                 589***********************666669977778557777766524567899***985 PP

>> FdtA  WxcM-like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.8e-05      0.16      48     106 ..      51     111 ..      38     122 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.8e-05
                 EEEESS--EEEEEEES-EEEEE.E-.SS-EEEEEE-STTEEEEE-TT-EEEEE---TT-EE CS
        FdtA  48 eHahkkleqllialsGsvevll.dd.gkkkkeilldspskglyipkmiWrelinfsedavl 106
                  H h++  +ll+ l+G++ vl  dd g   ++++l ++ ++l +++++W+++ +++ + ++
  CTQ29215.1  51 PHRHRHTFELLLPLKGRFVVLNfDDhGVVTNRVVLGDTCTALEMEAGTWHTVLSLDAGGMV 111
                 6****************999752442667899******************99888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1261.05
//
Query:       CTQ29216.1  [L=293]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2332.46
//
Query:       CTQ29217.1  [L=302]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-48  163.6   6.4    6.4e-48  162.9   6.4    1.3  1  LysR_substrate  LysR substrate binding domain
    1.9e-25   88.6   2.8    2.4e-25   88.2   0.7    2.3  2  HTH_1           Bacterial regulatory helix-turn-helix protein
    0.00063   19.5   1.4     0.0013   18.4   0.1    2.1  2  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
       0.03   14.2   0.0      0.063   13.1   0.0    1.5  1  HTH_5           Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   6.4   1.4e-51   6.4e-48       4     207 ..      89     289 ..      86     290 .. 0.98

  Alignments for each domain:
  == domain 1  score: 162.9 bits;  conditional E-value: 1.4e-51
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsl 98 
                     ++g+Lri+++pt+++y l pl++++ +ryP+v++ ++e+++e+++++l+e elD++i++++ ++++++++pL++e l lv+s++hpLa+++ ++l
      CTQ29217.1  89 QHGKLRIAMTPTFTTYMLGPLMEAYYRRYPGVKVLIQEMNQERMEAMLLEDELDVGIAFDDSRSQEIVVQPLLTETLALVVSRAHPLAGERDLQL 183
                     68********************************************************************************************* PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrel 193
                     ++L  +plill+ ++++r+++++ +r ++l+p+v++e+ns+ a+l+ +++    +llp+ ++ +    +++va++l++  l+r+ +l+ r+g ++
      CTQ29217.1 184 QALDAQPLILLSSEFATREQIDRYCRLHRLEPDVRMEANSIGAVLSVIRSTTLATLLPAAIAGQ---FDDVVAIELRPALLQRTACLLQRQGAWQ 275
                     *************************************************************988...888********9999************* PP

                     HHHHHHHHHHHHHH CS
  LysR_substrate 194 spavrafidflrea 207
                     s+a+rafi ++re+
      CTQ29217.1 276 SAAARAFITLAREN 289
                     **********9986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.7   5.4e-29   2.4e-25       1      60 []       3      62 ..       3      62 .. 0.99
   2 ?   -1.9   0.1      0.76   3.4e+03       5      14 ..     280     289 ..     268     292 .. 0.66

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 5.4e-29
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lrql +f+avae+  f+rAA +L++sqpa+s+qi++LE+ l+v+Lf+R+gr++rLT+aGe
  CTQ29217.1  3 LRQLSYFIAVAEHCGFSRAAAALHVSQPALSQQIRQLEAMLEVQLFDRSGRRIRLTDAGE 62
                79*********************************************************7 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.76
                 HHHHHHHHHS CS
       HTH_1   5 rlfvavaeeg 14 
                 r+f+++a+e 
  CTQ29217.1 280 RAFITLAREN 289
                 5666666665 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1     3e-07    0.0013      10      50 ..      13      53 ..       2      58 .. 0.87
   2 ?   -0.8   0.1      0.31   1.4e+03       7      24 ..     266     283 ..     260     284 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3e-07
                HTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHH CS
      HTH_30 10 enggnisatAkaLhvHrnTlryRLrrieellgldlddpddr 50
                ++++  s++A+aLhv+   l++ +r++e +l + l d + r
  CTQ29217.1 13 AEHCGFSRAAAALHVSQPALSQQIRQLEAMLEVQLFDRSGR 53
                567999***************************99886654 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.31
                 HHHHTTT-HHHHHHHHTS CS
      HTH_30   7 aylenggnisatAkaLhv 24 
                 + l+ +g ++ +A++ ++
  CTQ29217.1 266 CLLQRQGAWQSAAARAFI 283
                 678899999999999887 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.4e-05     0.063      22      41 ..      22      41 ..      14      42 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
                HHHHTS-HHHHHHHHHHHHH CS
       HTH_5 22 aeelglsqstvShHLkkLre 41
                a++l++sq+++S++ ++L+ 
  CTQ29217.1 22 AAALHVSQPALSQQIRQLEA 41
                789***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2513.66
//
Query:       CTQ29218.1  [L=152]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-20   71.1   0.0    7.5e-20   70.7   0.0    1.2  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    8.9e-16   57.9   0.0      1e-15   57.7   0.0    1.1  1  MafB19-deam      MafB19-like deaminase
  ------ inclusion threshold ------
      0.031   14.2   0.0      0.032   14.1   0.0    1.2  1  APOBEC_N         APOBEC-like N-terminal domain
      0.082   13.0   0.0        0.1   12.7   0.0    1.3  1  SNAD4            Secreted Novel AID/APOBEC-like Deaminase 4
       0.16   12.1   0.0       0.19   11.8   0.0    1.3  1  APOBEC3          APOBEC3
       0.57   10.3   2.1         13    5.9   2.2    2.2  1  Bd3614-deam      Bd3614-like deaminase


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   2.5e-23   7.5e-20       1     100 [.       1     101 [.       1     102 [. 0.95

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 2.5e-23
                      HHHHHHHHHHHHHHHHHHHTTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.TSSCETTEEEEEEE--BHHHHHHHHHHT CS
  dCMP_cyt_deam_1   1 mekdekllelalkaakeaqkcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaakn.ggsklegatlyvtlePCsmCakaiiqsg 93 
                      m+ +  +l+ al +ak+  ++   ++Gav+v+n+ei+++ +n    +g++t+HAE+nA++  a + g+  l+++++y + +PC+mC  a+  +g
       CTQ29218.1   1 MSAHDHYLQRALVLAKQNIADGGRPFGAVLVRNDEIVAESVNTFHLSGDPTAHAELNAVRDLAARqGSAALRECVIYASGQPCPMCLSALYLTG 94 
                      6778999*********999*******************************************9995599************************* PP

                      -SEEEEE CS
  dCMP_cyt_deam_1  94 ikkvvvg 100
                      +++v+++
       CTQ29218.1  95 VREVFFA 101
                      ****986 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   3.5e-19     1e-15       3     109 ..       4     114 ..       2     131 .. 0.91

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 3.5e-19
  MafB19-deam   3 kekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvyg 100
                  ++++ + al ++++ +  ++++ gav v +++++a   n   l  ++taHaE +a++  a   +s  l ++++y   +pC+mC+ a+   g++++ ++
   CTQ29218.1   4 HDHYLQRALVLAKQNIADGGRPFGAVLVRNDEIVAESVNTFHLSGDPTAHAELNAVRDLAARQGSAALRECVIYASGQPCPMCLSALYLTGVREVFFA 101
                  89999****************************************************9889999999******************************* PP

  MafB19-deam 101 agnpks....lnk 109
                   +n+++    l+ 
   CTQ29218.1 102 NSNQDGepfqLST 114
                  **99987666444 PP

>> APOBEC_N  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.1e-05     0.032      46      93 ..      47      91 ..       6     129 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
                S...TBCHHHHHHHHHHHHT--..TTEEEEEEEEESS-S-HH....HHHHHH CS
    APOBEC_N 46 a...skHaEelflediedqelre.pkkkyeitlYvswsPChessdeCaekla 93
                +    +HaE+  ++d+      +     +e  +Y s +PC+     C ++l+
  CTQ29218.1 47 SgdpTAHAELNAVRDLAAR---QgSAALRECVIYASGQPCPM----CLSALY 91
                044478*****99986644...33589***************....*99887 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.5e-05       0.1      16      61 ..      45      91 ..      32     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.5e-05
       SNAD4 16 vlknkke.haEllflekikseldpsqeyrvtwylswsPCaeCaekia 61
                +l+ + + haEl+  +++ ++  ++   + ++y s  PC+ C ++++
  CTQ29218.1 45 HLSGDPTaHAELNAVRDLAARQGSAALRECVIYASGQPCPMCLSALY 91
                44554446**********88666666678889**********99875 PP

>> APOBEC3  APOBEC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.3e-05      0.19      22      70 ..      43      90 ..      29     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.3e-05
     APOBEC3 22 rgyfknkekkHAEerfidkirslnldslkqykitcylswsPcpkCaeel 70
                + +++   + HAE  +++ ++     s    +  +y s  Pcp C + l
  CTQ29218.1 43 TFHLSGDPTAHAELNAVRDLAA-RQGSAALRECVIYASGQPCPMCLSAL 90
                4566667889**********99.556667799*************7765 PP

>> Bd3614-deam  Bd3614-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   2.2    0.0043        13      76      99 ..      72      95 ..      20     108 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0043
  Bd3614-deam 76 egarllvtlqcCkmCAalvvaaad 99
                  + +++++ q+C mC + ++  ++
   CTQ29218.1 72 RECVIYASGQPCPMCLSALYLTGV 95
                 457899999999999887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1163.73
//
Query:       CTQ29219.1  [L=398]
Description: putative cyanate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-28   97.2  57.4    1.1e-26   93.6  43.9    2.0  2  MFS_1            Major Facilitator Superfamily
    1.8e-09   37.0  23.0    1.4e-05   24.2   8.7    2.1  2  Sugar_tr         Sugar (and other) transporter
    8.5e-09   35.2  32.6    2.6e-08   33.6  32.6    1.9  1  MFS_4            Uncharacterised MFS-type transporter YbfB
    2.5e-07   29.6  13.9    1.3e-05   24.0   3.1    2.4  2  MFS_2            MFS/sugar transport protein
  ------ inclusion threshold ------
        2.6    7.9   4.6         35    4.2   0.1    3.3  3  Peptidase_M48_N  CAAX prenyl protease N-terminal, five membra


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6  43.9   3.1e-30   1.1e-26      13     352 ..      26     346 ..       9     347 .. 0.84
   2 !   17.3   5.5   4.8e-07    0.0017      94     186 ..     302     396 ..     301     398 .] 0.83

  Alignments for each domain:
  == domain 1  score: 93.6 bits;  conditional E-value: 3.1e-30
       MFS_1  13 silgpalplalaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgagalfpagaal 109
                 + +gp+lp  +  + g+s + + ll++l  ++++v++l +G++ dr +G +r + l+ll+ a+g +ll  +a+++ lll + +  G+g g++ +a+ a+
  CTQ29219.1  26 TSIGPLLP-DIRAASGMSYTLAALLTALPVIAMGVLALAAGWV-DRyIGQKRSIALSLLIIAAG-ALLReIAPNSGLLLTSALAGGIGIGIIQAAIPAV 121
                 33999***.99******************************99.8857****************.44446778888*********************** PP

       MFS_1 110 iadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdp 207
                 i ++fp+ + ++++gl+sa+   G  lg+++ ++la +s+ W+ +    a+ +lla++   +l  +++ +r++  +             p   a+  ++
  CTQ29219.1 122 IKHLFPR-RTPLVMGLWSAALMGGGGLGAAFTPWLAsHSAAWHDALAWWALPALLALL--SWLAICRHLPRAPHQTSAS----------P-RVAIIGQR 206
                 *******.****************************77778****9999999999955..4666666666666655555..........4.66777788 PP

       MFS_1 208 vlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllv 306
                   w l + + l+ +g+++l ++lp y   +lg s + ++g llall ++  ++all+ +l++   rr  lllal+l l++++g+++l+   sa+++++ 
  CTQ29219.1 207 RAWTLGLYFGLINAGYASLIAWLPPY-YIQLGDS-AQYSGSLLALLTVGQTAGALLLPALARQEDRRQLLLLALALQLIGFCGFIWLPEHFSALWAIA- 302
                 888555555555569999********.9999999.6777777777777777779999999999999************************77777665. PP

       MFS_1 307 lvliGfglgfvfpsllalasdla.ppeeagtasglfntagslggalg 352
                    +G+glg +fp+ l+la d+a  p  ag+++++++ +g + + l+
  CTQ29219.1 303 ---CGVGLGGAFPLCLVLALDHAgQPAVAGRLVAFMQGIGFIIAGLS 346
                 ...8*******************545777777777777777666665 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 4.8e-07
       MFS_1  94 lqGlgagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspke 186
                  +G+g g++fp++++l+ d + +    gr ++++++   + a l p l+gll s+ g     +++ ++++++l+a  l l ++p+ +p+++r++  +
  CTQ29219.1 302 ACGVGLGGAFPLCLVLALDHAGQpAVAGRLVAFMQGIGFIIAGLSPWLSGLLRSLSGnytLDWSWHAICVLLLMA--LTLRFIPAHYPAEWRQRASD 396
                 68*********************6667788899999999999********9998888888555555666666666..444***********998766 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   8.7   3.8e-09   1.4e-05      47     189 ..      45     181 ..      32     189 .. 0.90
   2 !   18.8   6.3   1.6e-07   0.00058      44     177 ..     239     373 ..     200     385 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.8e-09
                 HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHH CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyql 145
                 l  l++++ ++   + +l ag++  ++G k s++ + ++  +ga+l  +a+   +  +l+++ +  Gig+G++++ +P  i+ + p +    ++ +   
  CTQ29219.1  45 LAALLTALPVIAMGVLALAAGWVDRYIGQKRSIALSLLIIAAGALLREIAP---NSGLLLTSALAGGIGIGIIQAAIPAVIKHLFPRRTPLVMGLWSAA 140
                 566777778888888899*********************************...99******************************************* PP

                 HHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 146 aitfGilvaaifglglnktsnadgwrillglqlvpallllilll 189
                  +  G l aa++ +  +++ +   w+  l+  ++pall l+ +l
  CTQ29219.1 141 LMGGGGLGAAFTPWLASHSAA---WHDALAWWALPALLALLSWL 181
                 *******************99...99999999999977666554 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.6e-07
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS.-SCCHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiA.pkklRgalvs 141
                 s+ +sg +++++ vG+++G+l++  l+   +R++ ll a +l +ig +  ++ +  +++ +l +  + +G+g+G+a  l+ +++   A  ++++g+lv 
  CTQ29219.1 239 SAQYSGSLLALLTVGQTAGALLLPALARQEDRRQLLLLALALQLIGFCGFIWLP--EHFSALWA--IACGVGLGGAFPLCLVLALDHAgQPAVAGRLVA 333
                 44578*************************************************..67888877..89***********999988888799999**999 PP

                 HHH.HHHHHHHHHHHHHHHHHHTSS-...TTHHHHHHHCC CS
    Sugar_tr 142 lyq.laitfGilvaaifglglnktsn...adgwrillglq 177
                 + q  + ++  l    +gl  + ++n   ++ w+  + l 
  CTQ29219.1 334 FMQgIGFIIAGLSPWLSGLLRSLSGNytlDWSWHAICVLL 373
                 8872333444444444444444444466666666665554 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6  32.6   7.3e-12   2.6e-08      13     356 ..      29     372 ..      26     380 .. 0.75

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 7.3e-12
       MFS_4  13 tpiLPallaegqlslsqagllaaaNylGYLvGallaafa.lsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvl.vfgssl..vl 107
                  p+LP+++a+ ++s++ a+ll a   +   v al+a    +  g++R     ++ ++ l ++a al++++a  + + + + +a+++ + ++ +++  v+
  CTQ29219.1  29 GPLLPDIRAASGMSYTLAALLTALPVIAMGVLALAAGWVdRYIGQKR-----SIALSLLIIAAGALLREIAPNSGLLLTSALAGGIGIgIIQAAIpaVI 122
                 69***********************9987777777733202234444.....44555555555555555555555555555555544423333321147 PP

       MFS_4 108 ahaaaarrervg....allfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaaeaakaeqkslpllalllaYgl 202
                 +h+ + r + v+    a+l +G GlG a +  l++   + +  a ++W + a+l+++  l++   lpra+++ +++++ a      ++ ++ l l +gl
  CTQ29219.1 123 KHLFPRRTPLVMglwsAALMGGGGLGAAFTPWLASHSAAWHD-ALAWWALPALLALLSWLAICRHLPRAPHQTSASPRVA---IIGQRRAWTLGLYFGL 217
                 777777777775222267999**********99987766655.55589999****************9999998888887...5666778899****** PP

       MFS_4 203 aGfGYiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllsllsp...splglivssvllGltflaita 298
                 + +GY     +l+ +  + + +a     l  l+ ++  +g+l+   +a++++ r++l +al+++ +g    + +p   s l+ i  +v+lG++f  +  
  CTQ29219.1 218 INAGYASLIAWLPPYYIQLGDSAQYSGSLLALLTVGQTAGALLLPALARQEDRRQLLLLALALQLIGFCGFIWLPehfSALWAIACGVGLGGAFPLCLV 316
                 ****************999***9999999***********************************9998888877633456789999*********9976 PP

       MFS_4 299 lvlqlarelappatrrllglmTasfgigQilGpllasllaeatgslalallvaaaalv 356
                 l+l  a    p    rl+++m  +  i   l p l +ll + +g+++l     a  ++
  CTQ29219.1 317 LALDHAG--QPAVAGRLVAFMQGIGFIIAGLSPWLSGLLRSLSGNYTLDWSWHAICVL 372
                 6666555..5666678888886333333345699999999999998887665554444 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   3.1   3.4e-05      0.12     257     337 ..      42     120 ..       6     126 .. 0.84
   2 !   24.0   3.1   3.6e-09   1.3e-05     142     330 ..     140     309 ..     132     349 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.4e-05
       MFS_2 257 ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpws 337
                 +++ a++++++++i++ + ++ + ++ + +g k++++l++l+ +++ +l  ++   n  l+l+ ++++g+g+g+++ ++++
  CTQ29219.1  42 SYTLAALLTALPVIAMGVLALAAGWVDRYIGQKRSIALSLLIIAAGALLREIA--PNSGLLLTSALAGGIGIGIIQAAIPA 120
                 6677888999999*********************************9999999..45555666667777777776665555 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 3.6e-09
       MFS_2 142 lsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervemrkkekteqkeklslleqlkevfrnraflillllfllaalal 240
                 + ++gg l+a++++ l+   ++  +++ +++++ ++ alL+ l+   ++   +   +      ++++ ++s+++ +  + + ra+ + l ++l++a   
  CTQ29219.1 140 ALMGGGGLGAAFTPWLASHSAA-WHDALAWWALPALLALLSWLA---IC---R---HL-----PRAPHQTSASPRVAIIGQRRAWTLGLYFGLINAGYA 223
                 5678888888888888777777.555555555554444444443...32...2...22.....457999****************************99 PP

       MFS_2 241 gvlnglllYyltyvlgngsaasvfllvv.tisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgv 330
                  + + l  Yy++  lg+ +++s +ll++ t+++++g++l ++la+  +++++ ll+++l+++++ ++++l p++  ++ +++  +g  +g+
  CTQ29219.1 224 SLIAWLPPYYIQ--LGDSAQYSGSLLALlTVGQTAGALLLPALARQEDRRQLLLLALALQLIGFCGFIWL-PEHFSALWAIACGVG--LGG 309
                 99999999**98..899999998888888*****************************************.666555444333333..333 PP

>> Peptidase_M48_N  CAAX prenyl protease N-terminal, five membrane helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.11     4e+02      42      91 ..      44      91 ..      36      95 .. 0.76
   2 ?    2.4   0.4     0.035   1.3e+02     127     157 ..     273     303 ..     268     319 .. 0.82
   3 ?    4.2   0.1    0.0098        35      42      89 ..     330     377 ..     321     387 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.11
  Peptidase_M48_N 42 slyslilllallllgllpflwklsgkllgldaeseilqslvfllllslis 91
                     +l  l+ +l ++ +g+l++   ++ +   + ++ +i+ sl+++++ +l+ 
       CTQ29219.1 44 TLAALLTALPVIAMGVLALAAGWVDR--YIGQKRSIALSLLIIAAGALLR 91
                     55667777888999999999999999..4577899999999988877765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.035
  Peptidase_M48_N 127 slllalviglpllaallwiiewggeyfylyl 157
                       lllal++ l+  ++++w+ e++   + + +
       CTQ29219.1 273 LLLLALALQLIGFCGFIWLPEHFSALWAIAC 303
                      579999*****************88777655 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0098
  Peptidase_M48_N  42 slyslilllallllgllpflwklsgkl...lgldaeseilqslvfllllsl 89 
                       l+ +++ + +++ gl p+l  l+++l   ++l   +  ++++++lll++l
       CTQ29219.1 330 RLVAFMQGIGFIIAGLSPWLSGLLRSLsgnYTL---DWSWHAICVLLLMAL 377
                      5678899999*************9998655444...333444433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 2959.83
//
Query:       CTQ29220.1  [L=23]
Description: Uncharacterized membrane protein YpdK [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (23 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      161  (0.00897987); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 185.79
//
Query:       CTQ29221.1  [L=404]
Description: putative aminotransferase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-59  200.0   0.0    7.6e-59  199.7   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
     0.0055   16.0   0.0      0.009   15.3   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.056   12.0   0.0      0.082   11.4   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
      0.079   11.8   0.0       0.83    8.5   0.0    2.0  2  Alliinase_C      Allinase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.7   0.0   1.7e-62   7.6e-59       2     347 ..      37     375 ..      36     389 .. 0.92

  Alignments for each domain:
  == domain 1  score: 199.7 bits;  conditional E-value: 1.7e-62
                    EEEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEE CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeil 97 
                    d+i+++ ++++g+    t+p+++++    +++ ++++ y++++g p l+ a+ +++ +++++++++e++ +v+ G++++++ l+ ++ l++gd +l
     CTQ29221.1  37 DIIDFSMGNPDGA----TPPHIVEKLCT-VAQRPDTHGYSTSRGIPRLRRAISRWYEERYNVDIDPESEAIVTIGSKEGLAHLMLAT-LDHGDTVL 126
                    89***********....**********9.**********************************************************.******** PP

                    EEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTC CS
  Aminotran_1_2  98 vpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagf 193
                    vp+p+y+ ++ ++ ++g++v+++pl +  df   +++le+a++e     +k+k++++  p+NPt +   l+  ek+++lak+y +l++ D aYa+ 
     CTQ29221.1 127 VPNPSYPIHIYGAVIAGAQVRSVPLVEGVDF---FNELERAIRE---SYPKPKMMILGFPSNPTAQCVELDFFEKVVALAKQYDILVVHDLAYADI 216
                    ************************9944444...5788888888...345789******************************************* PP

                    BSSSSHTHHHHGGSTTSTT.EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 194 vfgsldavatranveeepn.llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrk 286
                    v++  +a + +++v  + +  +   +lsK++++aG+R+G+ +gn+ +v++l+++++   +   ++lq a+ aal+ +++    + + ++++++rr+
     CTQ29221.1 217 VYDGWKAPS-IMQVPGARDvAVEFFTLSKSYNMAGWRIGFMVGNKTLVNALARIKSYHDYgtFTPLQVAAIAALEGDQQ---CVRDIAEQYKRRRD 308
                    ***888888.666666655568999******************************9877778****************8...9************* PP

                    HHHHHHHHSTEEEECCSCSSEEEEEETHH....CHHHHHHHHHHTCTEEEEEGGGGTS..TTEEEEE CS
  Aminotran_1_2 287 elrdeLaelglkvlasqsgmflltdlsae....takelskkLleevgvyvtpgtsftv..pgrlRit 347
                    +l+++L e+g+ v  +++ m+++  +++        e++kkLl+e +v v+pg  f+    +++R+ 
     CTQ29221.1 309 VLVKGLHEAGWMVECPKASMYVWAKIPEPyaamGSLEFAKKLLNEAKVCVSPGIGFGDygDTHVRFA 375
                    **************************9999999999****************988876665556655 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     2e-06     0.009      92     169 ..     140     212 ..     134     214 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2e-06
                      HCC--EEEEE-EBTTTBE-HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEET CS
  Beta_elim_lyase  92 elagvklrdlknkeaGkmdlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgA 169
                      ++ag+++r ++  e G   +++le+ai+e  + ++k+k+ +l    n    q+v+l+  ++v a+ak+y+i ++ D A
       CTQ29221.1 140 VIAGAQVRSVPLVE-GVDFFNELERAIRE--S-YPKPKMMILGFPSNP-TAQCVELDFFEKVVALAKQYDILVVHDLA 212
                      57999999999999.88889*********..5.799999999999995.78***********************9966 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.8e-05     0.082      84     173 ..     115     210 ..      97     217 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.8e-05
                      HHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST.TSHHHHHHHCCT...TEEEEEEESS-TTTT----...HHHHHHHHHHTT-EE CS
  Cys_Met_Meta_PP  84 ilallkaGdeivvsddlYggtqrllkkvlkklgievkfvdt.sdleelekaike...ntklvylEtptnpllkvvD...iekiaklakkagvlv 170
                      +la l +Gd ++v +  Y            ++  +v  v+  + ++ele+ai+e   + k++ l  p+np+ ++v    +ek+++lak+ ++lv
       CTQ29221.1 115 MLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVR-SVPLVEGvDFFNELERAIREsypKPKMMILGFPSNPTAQCVEldfFEKVVALAKQYDILV 207
                      566666777777777766543322222222222.233333326688999999877779***************99733458************* PP

                      EEE CS
  Cys_Met_Meta_PP 171 vvD 173
                      v D
       CTQ29221.1 208 VHD 210
                      988 PP

>> Alliinase_C  Allinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00019      0.83     164     228 ..     206     277 ..     166     309 .. 0.73
   2 ?    1.3   0.0     0.028   1.3e+02     318     362 ..     348     393 ..     323     394 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00019
                  EEEEE-TT....-..S..TTTS---S-B--SEEEEEHHHHHS-GGG-EEEEEES-HHHHHHHHHHHHHHHSS- CS
  Alliinase_C 164 kviyDlay....Y..W..PhytpitskadedimLftlskltGhaGsrlGWalvkdkevakklveyieknsiGv 228
                   v++Dlay    Y  W  P   ++  + d  +  ftlsk    aG r+G+ +v +k++ + l +  +    G+
   CTQ29221.1 206 LVVHDLAYadivYdgWkaPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGF-MVGNKTLVNALARIKSYHDYGT 277
                  5666666633332445447777788888888999***************8.6777777776666555555555 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.028
                  HHHHHTTTEEEEEGGGGTS.-TTEEEEESSS-HHHHHHHHHHHHTS CS
  Alliinase_C 318 aevlrekkiltrsGevfea.esryvrlsllkrdddfdvllerlkkl 362
                  +++l+e+k+    G  f++ +  +vr +l+++ d   + ++ +k +
   CTQ29221.1 348 KKLLNEAKVCVSPGIGFGDyGDTHVRFALIENRDRTRQAIRGIKAM 393
                  6789999********99864789***********999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3134.48
//
Query:       CTQ29222.1  [L=565]
Description: putative sensory kinase in two-component system with YpdB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-43  146.8  14.9      7e-43  146.0  14.9    1.4  1  5TM-5TMR_LYT     5TMR of 5TMR-LYT
    1.6e-24   86.1   1.1      4e-24   84.7   1.1    1.7  1  His_kinase       Histidine kinase
    5.2e-08   33.1  14.0    1.6e-07   31.5  14.2    1.7  1  ECF-ribofla_trS  ECF-type riboflavin transporter, S component
    1.6e-06   28.6   0.0    3.5e-06   27.5   0.0    1.6  1  HATPase_c        Histidine kinase-, DNA gyrase B-, and HSP90-
    4.7e-05   23.7   0.0    0.00029   21.1   0.0    2.1  2  GAF_2            GAF domain
    0.00018   21.7  15.3    0.00066   19.8  15.4    1.8  1  ECF_trnsprt      ECF transporter, substrate-specific componen
    0.00067   20.3   1.3     0.0017   19.0   0.0    2.3  3  GAF              GAF domain
  ------ inclusion threshold ------
       0.02   14.9   0.0      0.037   14.0   0.0    1.4  1  HATPase_c_2      Histidine kinase-like ATPase domain
       0.37   11.1   2.7          2    8.7   0.8    2.6  2  DUF1269          Protein of unknown function (DUF1269)
       0.49   10.6  15.7       0.13   12.4   3.9    2.6  2  DUF3792          Protein of unknown function (DUF3792)


Domain annotation for each model (and alignments):
>> 5TM-5TMR_LYT  5TMR of 5TMR-LYT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0  14.9   3.9e-46     7e-43       2     167 ..      29     192 ..      28     194 .. 0.95

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 3.9e-46
  5TM-5TMR_LYT   2 plfrkllsekrktlksklllglifglfsilgtytgieiegaiantRaigvvvaGllgGplvGliagliaglhRyl..lgGftalacgistilaglla 96 
                   +lfr+ll++  +t k+ l++++if+lf++++t +g+++eg+++n+R+i v+ +G+l+Gp+vG+i+g+iag+hRyl  + G+ta++c+i++i+agll+
    CTQ29222.1  29 RLFRELLHKSAHTPKELLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGAIVGAIAGVHRYLidIDGVTAVPCFITSIVAGLLS 125
                   69*****99999***************************************************************9999****************** PP

  5TM-5TMR_LYT  97 GlihrklkrrrkkltvlvalligllveilqmllilllakpfdqalalvktialPmilvnslgtalflsilr 167
                   Gli rk+    ++ ++  ++l g+++e+l+m+l++++a+  ++++++v++i++Pmil  s+++ +++++++
    CTQ29222.1 126 GLINRKVA---REQRWKIGILAGMMCETLTMILVVVWAPSLSLGVDIVSKIGIPMILG-SVCIGFIVLLVQ 192
                   ********...69******************************************876.666776776666 PP

>> His_kinase  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   1.1   2.2e-27     4e-24       1      78 []     359     438 ..     359     438 .. 0.92

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 2.2e-27
  His_kinase   1 aelkaLqaqinPHFlfNtLnsiqslaeedpeeaeemlekLskllrysl.eseee.vtLeeElellesYlelqklrfgdrl 78 
                 ael+aLq++inPHFlfN+Ln+i+s ++ +p++a++++ +Ls++lry++  +++e + +++El  +++Y++++++rfgd+l
  CTQ29222.1 359 AELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIeLKDDEqIDIKRELYQIKDYIAIEQARFGDKL 438
                 79***********************988********************433333699********************986 PP

>> ECF-ribofla_trS  ECF-type riboflavin transporter, S component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5  14.2     9e-11   1.6e-07       9     129 ..      48     164 ..      41     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 9e-11
                      HHHHHHHHHHHHHHH---B-S.SS-B--TTHHHHHHHHHHSS--STHHHHHHHHHHHHHHHSS-GGGHHHHHHHHHHHHHHHHHH--S-S-SSH CS
  ECF-ribofla_trS   9 atailaAlvvvltlfisIplpantegsinlgdavlalaallfGpvvGflvGaiGsalaDllsgYgiwapftliikgliGlivGliakklkknke 102
                      +ta +  l++ ++++  +p+    ++ +n+  + ++  ++lfGp+vG++vGai  +  +l++  g+ a+  +i++ + Gl+ Gli +k +++++
       CTQ29222.1  48 VTA-IFSLFALFSTWSGVPVE---GSLVNVRIIAVMSGGILFGPWVGAIVGAIAGVHRYLIDIDGVTAVPCFITSIVAGLLSGLINRKVAREQR 137
                      333.33466667777777775...55*****************************9999999988777777******************99999 PP

                      ...HHHHHHHHHHHHHHHHHHHHHHHH CS
  ECF-ribofla_trS 103 ngvfkilalvlfaivmvigyviaegll 129
                        +  ++++++  + m++  v a  l 
       CTQ29222.1 138 WKIGILAGMMCETLTMILVVVWAPSLS 164
                      555555567777777776655554444 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0     2e-09   3.5e-06       9     110 ..     456     552 ..     453     554 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2e-09
                 HHHHHHHHHHHH..HSTTTEEEEEEEEEE..TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHH.HTTTEEEE.EEETTTE CS
   HATPase_c   9 iisnlvdNavkf..atkageieveikase..ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklve.lmgGeiwv.esepgrG 101
                 +i+ lv+Na+ +  ++ +g++ v+i  +e  ++++isv+D+G Gi+++ + ++ +             g+ +Gl  v+  v+ l+g  +++ + +p  G
  CTQ29222.1 456 LIQPLVENAIVHgiQPCKGKGVVTIGINEcgNRVRISVRDTGNGIDPAVVARVEADE---------MPGNKIGLLNVHHRVKlLYGEGLHIrNLTP--G 543
                 67889999999987555555555555436679***************9999665554.........55***********88868887777733555..9 PP

                 EEEEEEEES CS
   HATPase_c 102 ttftftlpl 110
                 t++ f++p 
  CTQ29222.1 544 TEIAFYVPN 552
                 999999985 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.69   1.2e+03      84     110 ..     163     189 ..     135     213 .. 0.79
   2 !   21.1   0.0   1.6e-07   0.00029       8     134 ..     228     341 ..     225     345 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.69
                 HHHHHTT--EEEEEE-TTS---EEEEE CS
       GAF_2  84 paghaglrsflavPlisegrvvGvlnl 110
                    ++++ s +++P+i +   +G+++l
  CTQ29222.1 163 LSLGVDIVSKIGIPMILGSVCIGFIVL 189
                 45677888889****999899999998 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.6e-07
                 HHHHHHHHHH.SS..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-.GGG-S-HHHHHHHHHTT--EEEEEE-TTS-- CS
       GAF_2   8 ldlvldelve.lgaalgyillvdddgglrlaawgeaeeefgaaldrplgeglvgealrtgrpvilnd.leedpdkkglpaghaglrsflavPlisegrv 104
                 l++v++ +++ ++a+++ i      ++  ++a+ + +e   +++d++++   + +a+r g+ +i n+  ++         + + ++s +++Pl ++g v
  CTQ29222.1 228 LRQVCEIIRRdITADAVAITNT---EH--VLAYVGVGEANYQRHDDMISPT-TRQAIRYGKIIIKNNdEAH---------RTPEIHSLMVIPLWEKGVV 311
                 899*****88688886665552...45..889999*********9988666.88******98885552444.........899**************** PP

                 -EEEEES......--HHHHHHHHHHHHHHH CS
       GAF_2 105 vGvlnlyankppafdeedlelLeelaeqia 134
                  G l +y+ + ++ + + +e++  l++ i+
  CTQ29222.1 312 TGTLKIYYCHAHRITSTLQEMAIGLSQIIS 341
                 ************999999998888888776 PP

>> ECF_trnsprt  ECF transporter, substrate-specific component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8  15.4   3.7e-07   0.00066      27     125 ..      66     161 ..      45     196 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.7e-07
                  S.....EEESHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCHT-SSTTHHHHHHHHHHHHCHHHHHHHHHHCCCHTTHHHHHHHHHHHHCCCCCHHHH CS
  ECF_trnsprt  27 i.....kitiihipvllggllfGpikGailgiitsvlkailtggtgalssfvpiaflsriligliagllykkgkkknlkeivvsfilagvlgtivatl 119
                  +     ++ ii +    gg+lfGp++Gai+g+i  v ++++ +  g+++   +  f+++i++gl+ gl+ +k  + +++  ++++++++ + t+++ l
   CTQ29222.1  66 VegslvNVRIIAVMS--GGILFGPWVGAIVGAIAGVHRYLI-DIDGVTA---VPCFITSIVAGLLSGLINRKVAREQRW--KIGILAGMMCETLTMIL 155
                  144333555555554..5***********************.7777666...8999***********999777777776..69999999999999999 PP

                  HHHCCC CS
  ECF_trnsprt 120 lvllii 125
                  +v++  
   CTQ29222.1 156 VVVWAP 161
                  877654 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.9   3.4e+03      85     107 ..     167     189 ..      92     194 .. 0.71
   2 !   19.0   0.0   9.6e-07    0.0017       6     131 ..     228     346 ..     225     347 .. 0.72
   3 ?   -3.7   0.0       9.4   1.7e+04     102     110 ..     518     526 ..     503     529 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.9
                 TTESEEEEEEEEETTEEEEEEEE CS
         GAF  85 mgirsslvvPlvndgelwGllvl 107
                   i+s +++P++ +  ++G +vl
  CTQ29222.1 167 VDIVSKIGIPMILGSVCIGFIVL 189
                 45667788888888888888876 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 9.6e-07
                 HHHHHHHHHHHHTESEEEEEEEEETTEEE...CEEEEECCEEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEETTEE CS
         GAF   6 ldtvveelrellgadrvalylpdydGlhy...dipqasrwlfmkngrgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvndgel 101
                 l++v+e +r+   ad va+   +++ l y   +  + +r   m  +++   q+++ g++++ +   +d+ +           ++i+s++v+Pl  +g +
  CTQ29222.1 228 LRQVCEIIRRDITADAVAITN-TEHVLAYvgvGEANYQRHDDMISPTT--RQAIRYGKIIIKN---NDEAHRT---------PEIHSLMVIPLWEKGVV 311
                 667777777777777777744.23333343222334444434444333..3999999999999...9****99.........9**************** PP

                 EEEEEEEESSS.....CSHHHHHHHHHHHHHHHHH CS
         GAF 102 wGllvlhnpsp.....pftreelellqvladqvav 131
                  G+l ++ +++       ++ ++ l q +++q++v
  CTQ29222.1 312 TGTLKIYYCHAhritsTLQEMAIGLSQIISTQLEV 346
                 ********666656555799999999999999876 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 9.4
                 EEEEEEEES CS
         GAF 102 wGllvlhnp 110
                 +Gll +h++
  CTQ29222.1 518 IGLLNVHHR 526
                 99*****95 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     2e-05     0.037      40      88 ..     461     510 ..     454     530 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2e-05
  HATPase_c_2  40 ctNavehayleap.egpvevrlesdeealtvevaDsGpgfdpetlpdpte 88 
                  + Na+ h+ + ++ +g v++ +   +++++++v+D G+g dp+  ++ ++
   CTQ29222.1 461 VENAIVHGIQPCKgKGVVTIGINECGNRVRISVRDTGNGIDPAVVARVEA 510
                  67***********99************************99987766554 PP

>> DUF1269  Protein of unknown function (DUF1269)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.8    0.0011         2       8      30 ..      77      99 ..      72     111 .. 0.84
   2 ?    0.7   0.0      0.35   6.3e+02      70      98 ..     324     355 ..     314     357 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0011
     DUF1269  8 GllvGllflnPllGaavGAaaGA 30
                +++ G ++++P++Ga+vGA aG 
  CTQ29222.1 77 AVMSGGILFGPWVGAIVGAIAGV 99
                677899999**********9994 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.35
     DUF1269  70 kvlealaklg...gkvlrtslskeeeekLqea 98 
                 +++++l+++    +++++t+l+ ++ e+L+e 
  CTQ29222.1 324 RITSTLQEMAiglSQIISTQLEVSRAEQLREM 355
                 455555555443479**************985 PP

>> DUF3792  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   4.0     0.052        92      17      72 ..      46      98 ..      44     106 .. 0.63
   2 ?   12.4   3.9   7.4e-05      0.13      41     107 ..     114     179 ..     105     189 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.052
     DUF3792 17 lilllilalllyftslsekvlsililiililsvfigGflagkkakkkgllnGllvG 72
                l++++i++l+  f+ +s   ++  ++ + i++v+ gG+l+g      g + G+++G
  CTQ29222.1 46 LAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWV---GAIVGAIAG 98
                56667777777777777666777777777777777777776654...344444444 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 7.4e-05
     DUF3792  41 iliililsvfigGflagkkakkkgllnGllvGllyflillllsllikksgsafslklliklllllla 107
                  +i++i++ ++ G++  k a+++++  G+l+G+++  ++++l +++  s s+  + ++ k+ + +++
  CTQ29222.1 114 CFITSIVAGLLSGLINRKVAREQRWKIGILAGMMCETLTMILVVVWAPSLSL-GVDIVSKIGIPMIL 179
                 567888889*************************998888888887665554.66666665553322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 4373.52
//
Query:       CTQ29223.1  [L=250]
Description: putative response regulator in two-component system with YpdA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-31  107.9   0.9      4e-31  107.1   0.4    1.7  2  LytTR         LytTr DNA-binding domain
      1e-23   83.6   0.1    1.7e-23   82.9   0.1    1.4  1  Response_reg  Response regulator receiver domain


Domain annotation for each model (and alignments):
>> LytTR  LytTr DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.82   7.4e+03      21      41 ..       6      26 ..       3      34 .. 0.63
   2 !  107.1   0.4   4.5e-35     4e-31       2      97 ..     152     248 ..     151     249 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.82
       LytTR 21 vtlvteneeylfrgtLkelee 41
                ++++  ++e+l ++ L+ l +
  CTQ29223.1  6 MKVIIVEDEFLAQQELSWLIN 26
                556666667777777766654 PP

  == domain 2  score: 107.1 bits;  conditional E-value: 4.5e-35
       LytTR   2 riilvplddilyieaeekyvtlvteneeylfrgtLkeleeklppdsffrvhRsylVnlkkikeidrdfngtleltlkn.geklpvSrrylkelkell 97 
                 rii+ +++di+y ea+ek ++++t +e++ ++++++e+ +klp+ +ffr+hRsy+Vnl+ki+ei+++fn+t+ l+l++ + ++pvSr+++ke+++l+
  CTQ29223.1 152 RIIVTSIHDIYYAEAHEKMTFVYTRRESFVMPMNITEFCSKLPTAHFFRCHRSYCVNLSKIREIEPWFNNTYVLRLRDlEFQVPVSRSKVKEFRQLM 248
                 8999******************************************************************************************987 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.1   1.9e-27   1.7e-23       1     111 [.       8     117 ..       8     118 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 1.9e-27
                   EEEESSSHHHHHHHHHHHH.HTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESE CS
  Response_reg   1 vlivdDdplvrellrqlle.eegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagadd 96 
                   v+iv+D+ l+++ l+ l++ ++++e v++++dg ++l+ l+++kvd i+lDin+p +dG+ l+++i +  +++ ++++ta +e  +avea++ +a+d
    CTQ29223.1   8 VIIVEDEFLAQQELSWLINtHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKE--HAVEAFEQEAFD 102
                   89*****************999**9*******************************************************997..9*********** PP

                   EEESSG-HHHHHHHH CS
  Response_reg  97 flsKpfdpeeLlkal 111
                   ++ Kp+++++++++l
    CTQ29223.1 103 YILKPYQESRIINML 117
                   ***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1957.13
//
Query:       CTQ29224.1  [L=321]
Description: glucokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.6e-121  405.2   0.0   1.8e-121  405.0   0.0    1.0  1  Glucokinase  Glucokinase
  ------ inclusion threshold ------
      0.027   14.8   0.0      0.043   14.1   0.0    1.3  1  PaaX_C       PaaX-like protein C-terminal domain


Domain annotation for each model (and alignments):
>> Glucokinase  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.0   0.0    2e-125  1.8e-121       1     315 [.       6     315 ..       6     316 .. 0.99

  Alignments for each domain:
  == domain 1  score: 405.0 bits;  conditional E-value: 2e-125
  Glucokinase   1 LagDiGGTkarlalveaeeeelelleiekyasadyasleealqaflaeaeaevkrpksavlAvAgpvegdeveltNlpWviseeelakelgleaveli 98 
                  L+gD+GGT+arlal++ +++e   +++++y++ dy+sle++++ +l+e++ +v++   +++A+A+p++gd+v++tN++W++s++e++++lg++++e+i
   CTQ29224.1   6 LVGDVGGTNARLALCDLASGE--ISRAKTYSGLDYPSLEAVVRVYLEEHQVTVNE---GCIAIACPITGDWVAMTNHTWAFSIAEMKRNLGFAHLEII 98 
                  89*******************..99**********************88887777...**************************************** PP

  Glucokinase  99 NDfeavayaiplleaedlvqlgggkkdaeapiavlGaGTGLGvallipekerrvvlasEGGhvdfapeseeevelleilrkklgrvsaErvlSGpGLv 196
                  NDf+av++aip+l+ae+l+q+gg+++ a +piav+GaGTGLGva+l++ ++r+v+l++EGGhvdfap+seee  +le lr++lg+vsaErvlSGpGLv
   CTQ29224.1  99 NDFTAVSMAIPMLKAEHLIQFGGSAPVAGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEGIILEELRAELGHVSAERVLSGPGLV 196
                  ************************************************************************************************** PP

  Glucokinase 197 nlyealaaadkleeellepaeiteaalegedplarealelFlailGsvagdlaLkllargGvyiaGGiapkilellkaseFreafedkgrlselleki 294
                  nly+a++++d++ +e+l+p e+te+al+++++ +r+al+lF+ i+G++ g+laL+l+++gGvyiaGGi+p++le++kas+Fr  fedkgr+++++++i
   CTQ29224.1 197 NLYRAIVKSDGRLPENLQPREVTERALADSCTDCRRALSLFCVIMGRFGGNLALTLGTFGGVYIAGGIVPRFLEFFKASGFRGGFEDKGRFKAYVQDI 294
                  ************************************************************************************************** PP

  Glucokinase 295 pvyvvlneeagLlGaaaaaaq 315
                  pvy+++++++gLlG++a+++q
   CTQ29224.1 295 PVYLIVHDNPGLLGSGAHLRQ 315
                  ****************99987 PP

>> PaaX_C  PaaX-like protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.8e-06     0.043      45      89 ..     190     234 ..     160     237 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.8e-06
      PaaX_C  45 lvrtlllheyrkllfrDPgLPeellpedWpGaaarelfrelyrel 89 
                 l    l++ yr ++  D  LPe+l p++ + +a ++ + +++r+l
  CTQ29224.1 190 LSGPGLVNLYRAIVKSDGRLPENLQPREVTERALADSCTDCRRAL 234
                 555679999*******************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2459.61
//
Query:       CTQ29225.1  [L=58]
Description: hypothetical protein CH1034_250353 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 468.37
//
Query:       CTQ29226.1  [L=411]
Description: putative ion channel protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-20   71.8  36.8    5.9e-20   71.8  36.8    2.1  2  Voltage_CLC  Voltage gated chloride channel


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.9   1.1    0.0029        51     127     177 ..      25      73 ..      12      75 .. 0.81
   2 !   71.8  36.8   3.3e-24   5.9e-20      15     328 ..      78     377 ..      65     397 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.0029
                  HHHHHHHHHHHHHHHHHCTTS-S.-.T---...--GGGHHHHHHHHHHHHHH CS
  Voltage_CLC 127 lpvfvasvvaalvlrlllgeepa.fgeveslfalsllelilfvllGilgGll 177
                  l  +va  vaal+ r+l+++ pa +g v++  + +l+ ++++ + Gi++Gl+
   CTQ29226.1  25 LILIVAMKVAALLQRVLWSNLPAqLG-VSA--DSPLWIIAMLTATGIAVGLV 73 
                  56788999999999999999977677.776..67777788888999999986 PP

  == domain 2  score: 71.8 bits;  conditional E-value: 3.3e-24
                  GGGSC-SHHHHHHHCTTSS---HHHHHHHHHHHHHHHHCTT-S-BTHHHHHHHHHHHHHHHHHHTT.--SHHHHHHHHHHHHHHHHHHHT-HHHHHHH CS
  Voltage_CLC  15 peaagsGipevkaalngvkgplslrvllvkflasvltvgsGlslGreGplvqiGAavgsglsrllklsrndrdrrlvaaGaAAGiAAaFnaPlgGvlf 112
                  p+ a  G +   + l g   p+ +  l+  + a++l ++ G+slG e p++ +  a++ +++++l  +r +      + +a++ i+A F++P++++l 
   CTQ29226.1  78 PGHA--GPDPATESLIGA--PIATGALPGLLAALILGLAGGVSLGPEHPIMVVNIALAVAVGSRLF-PRVS-SLDWTILAASGTIGALFGTPVAAALI 169
                  5444..555555555543..57888999999*******************************9864.4444.5559999****************999 PP

                  HCTTTSTSS--...TTHHHHHHHHHHHHHHHHHHCTTS-S-.T---...--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCHHHHHHHHHH CS
  Voltage_CLC 113 alEevsrefsl...rallpvfvasvvaalvlrlllgeepafgeveslfalsllelilfvllGilgGllgalfvrlllkverlfrkleklkikkrlepa 207
                      + ++ ++   + l++ ++a++++al++ l+++ ++++  ++++ ++ + +++  +++++++ ++g++ v++l +++ l+++l   k  ++l + 
   CTQ29226.1 170 FSQTLNSSNDTplwDRLFAPLLAAAAGALTTGLFFHPHFSLP-IPHYGQMRFVDILSGIIVALIAIAVGMVAVWCLPRLHALMHRL---KN-PILTLG 262
                  999877777667897778888889999*******98888887.998889999999999999999999999999********99999...54.689*** PP

                  HHHHHHHHHCCCSCC.CSSSSCCHHHHHCTT-S-HHHHHH...HHHHHHHHHHHHHCTT-CSBSHHHHHHHHHHHHHHHHHHHHHH-CTSSC...HHH CS
  Voltage_CLC 208 lvgllvgllglllpasvlgggyeliasllegstlllsllllllllllkllataltlgsgvpgGifaPsLviGAalGrlvglvlalllpgaassdpgaf 305
                  ++gll+g++g +    +l  g + +++l+ ++  +l+ +  ll++l+kl+a +l+++sg+ gG ++P  ++G alG ++ + ++++ p a    +  +
   CTQ29226.1 263 IGGLLLGIVGTIGGPLTLFKGLDEMQQLAFSQ--TLTAADFLLIALVKLAALVLASASGFRGGRIFPAVFVGVALGLMLHAHVDAV-PAA---ITVSC 354
                  **********9976459999999999999887..58888999**************************************999999.422...23789 PP

                  HHHCCTHHHHHCCS-HHHHHHHH CS
  Voltage_CLC 306 alvGmaaflagvtrapltaiviv 328
                  a++Gm+ +++    ++l ++++v
   CTQ29226.1 355 AILGMVLVVTRDGWLSLFMAAVV 377
                  99999877765444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3198.95
//
Query:       CTQ29227.1  [L=553]
Description: Indole-3-pyruvate decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-33  115.1   0.4    1.1e-32  113.0   0.1    2.0  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    4.5e-19   68.7   0.0    1.8e-18   66.8   0.0    2.0  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
      2e-18   66.4   0.1    1.8e-17   63.4   0.0    2.3  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.1   1.8e-36   1.1e-32       2     168 ..       6     176 ..       5     180 .. 0.88
   2 ?   -0.6   0.0      0.15   8.7e+02      90     144 ..     453     518 ..     414     525 .. 0.58

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 1.8e-36
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   t +++l+++L ++g++++fgvpG+ +l++ld++ ++  + +v + +E +aa+aAdgyar++g  g++l+t+g+G ++al+++a+ + ++iP+l+++g
    CTQ29227.1   6 TIGDYLLDRLVDCGIDRLFGVPGDYNLQFLDRVIAHSALGWVGCANELNAAYAADGYARIKG-AGALLTTYGVGELSALNGIAGSYAEHIPVLHIVG 101
                   789*********************************************************87.********************************** PP

                   E--CCCHH.....S..TC--T..-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EE CS
  TPP_enzyme_N  99 drptslrg.....qgvlqqel..dqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleev 168
                    ++t  ++     +++l +    + + + +++t +++ + ++ ++ ++++r +r +  + ++P yl lp+dv ++++
    CTQ29227.1 102 APSTGAQQrgellHHTLGDGDfrHFARMSEQIT-CSQALLTAGNACHEIDRVLRDM-LTHHRPGYLMLPADVARAAA 176
                   ********6555544444333444444455666.8888889999999*********.88888**********98875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.15
                   T--EEEEEEE--CCCHH.S..TC--T-CCHH.........HC.CCSSEEEE-SSGGGHHHHHHHHH CS
  TPP_enzyme_N  90 riPllvlsgdrptslrg.qgvlqqeldqlal.........fr.pvtkyaervtspeelpealrrAi 144
                   + Pl++l  + +++ ++  ++++q  +  al         f+ +v+  ++rvt+ +el+ea+ + i
    CTQ29227.1 453 QKPLILLLNNEGYTVERaIHGPEQRYNDIALwdwqrlpeaFApDVASRCRRVTQTSELREAMTESI 518
                   456666666665555555455554555555555555566644367788888888888888887655 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.29   1.8e+03      51      69 ..     116     136 ..      99     163 .. 0.71
   2 !   66.8   0.0     3e-22   1.8e-18      14     153 .]     394     528 ..     382     528 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.29
                   EEEEHHHHHHT..GGGHHHHH CS
  TPP_enzyme_C  51 aivGDGgflmi..lqelatav 69 
                    + GDG+f +   ++e +t+ 
    CTQ29227.1 116 HTLGDGDFRHFarMSEQITCS 136
                   567888887654556666554 PP

  == domain 2  score: 66.8 bits;  conditional E-value: 3e-22
                   TTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB.BS-- CS
  TPP_enzyme_C  14 kvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfggkrksgpagkdlkp 110
                   k+ +  s++ + ++g++G++lpaA Ga+ a+ +r+vv ivGDG+ + ++qe+  + r + + ++++lnNegy   +  + p+    +          
    CTQ29227.1 394 KLPSEASLIVQPLWGSIGFTLPAAYGAQTAAAERRVVLIVGDGAAQLTIQEMGSMLRDKQKPLILLLNNEGYTVERAIHGPEQR--YND-----IAL 483
                   556677889999*****************9999***************************************999998766654..322.....445 PP

                   --HHHHHHHTTSEEE....EESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C 111 vdfaklaealGakga....rvekadveeleealkealekkgpaliev 153
                    d  +l ea+  ++a    rv+++  +el+ea+ e ++++  +l+ev
    CTQ29227.1 484 WDWQRLPEAFAPDVAsrcrRVTQT--SELREAMTESITSDTLTLVEV 528
                   688999999955577777788888..*******************97 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   2.9e-21   1.8e-17       2     118 ..     200     316 ..     199     331 .. 0.91
   2 ?   -0.1   0.0      0.12     7e+02      10      24 ..     425     439 ..     420     451 .. 0.81

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 2.9e-21
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   e+a  ll+ ++r+ +l++  ++r g ++ lre + k+ +  +t+lmgkg+++e+   ++g + g++++++++ea+e+aD+++++G+rf+d+ t+g  
    CTQ29227.1 200 EHASRLLRGSRRISLLADFLAQRYGLQKTLREWVAKTPVAHATMLMGKGLFDEQQSGFVGtYSGIASAPQTREAIENADTIICIGTRFTDTITAGFT 296
                   578899************************************************************************************9888866 PP

                   TTTTTT-EEEEEESSCCCCTT CS
  TPP_enzyme_M  98 pefapeakiihididpaeigk 118
                   ++ a+e k i+i++ +  +g 
    CTQ29227.1 297 QHLARE-KTIEIQPFAVRVGD 316
                   666666.88999887777765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.12
                   H-SSEEEEE-CHHCH CS
  TPP_enzyme_M  10 aakrpvilvGggvar 24 
                   a +r+v++vG g+a+
    CTQ29227.1 425 AERRVVLIVGDGAAQ 439
                   67899*******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 4258.40
//
Query:       CTQ29228.1  [L=330]
Description: aldo-keto reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-67  226.9   0.0    3.4e-67  226.7   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.7   0.0   1.9e-71   3.4e-67       2     293 ..      28     328 ..      27     329 .. 0.95

  Alignments for each domain:
  == domain 1  score: 226.7 bits;  conditional E-value: 1.9e-71
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-..TTTHHHHHHHHHHHH.-TTTGGG-EEEEEE..--SSSTTSSSS-HHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevY..gkgqseellGealkk.srkkreeviiatKv..dlrdaeiksglskenireslees 93 
                   + lG+w+ +++ e+  e++ ++l +a++ Gi++fD+A+ Y   +g++e ++G++lk+     r+e+ii+tK   +++d+++ + +s++ +++sl++s
    CTQ29228.1  28 ISLGLWHNFGD-ETRVETSRQMLLHAFDLGITHFDLANNYgpPPGSAESNFGRILKEsLLPYRDELIISTKAgyTMWDGPYGDWGSRKYLVASLNQS 123
                   889******98.****************************8879*************9999***********999999******************* PP

                   HHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH...HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEE CS
  Aldo_ket_red  94 lkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka...kkkkkvkivavqveynllreleeegllelckkkgvpli 187
                   lkr+g++yvD+++ Hrpdp++p + e+++al++lv++Gk+ ++G+Sn++ +q ++a   +++ +++ ++ q +y+++++  eegll++++ +g++ i
    CTQ29228.1 124 LKRMGLEYVDIFYHHRPDPQTP-LMETMRALDHLVRQGKALYVGISNYPLAQAREAvkiLNDLGTPCIIHQPRYSMFERGVEEGLLDFLQTEGIGSI 219
                   **********************.**************************99999999**************************************** PP

                   EBSTTGGGTTGTTTSS---SSSCCC-------....TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG-. CS
  Aldo_ket_red 188 aysplggGlltgkyqseedkedkeprkdlkrd....ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalel. 279
                   a+spl+gG lt +y +  + ++     ++ r+    + t+ +l+++++l++ a+ +g +l+q+al+++l  ++v++v++gas+ +ql+d ++ l+  
    CTQ29228.1 220 AFSPLAGGQLTDRYLNGIPADSRA--ASSSRFlqpeQLTPARLEKIRQLNRQAEARGQKLSQMALAWVLREEKVTSVLIGASKTAQLDDAVGMLQNr 314
                   ***************998887543..3333446788**********************************************************666 PP

                   ---HHHHHHHHHHH CS
  Aldo_ket_red 280 klseeevaeldell 293
                    +++ee a++d++l
    CTQ29228.1 315 HFTTEECAAIDAIL 328
                   ***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2632.82
//
Query:       CTQ29229.1  [L=119]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-18   66.4  25.2    3.2e-18   65.8  25.2    1.3  1  DUF2502   Protein of unknown function (DUF2502)


Domain annotation for each model (and alignments):
>> DUF2502  Protein of unknown function (DUF2502)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8  25.2   1.8e-22   3.2e-18       1      84 [.      23     102 ..      23     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 1.8e-22
     DUF2502   1 sidllPgislhlGdrdkrGnyWdGydWrdrqyWkdhkgahlgernergyewdgnrW......rdrelrk..rkeyerearepfrdrdkhrek 84 
                 +i+llP+++l++Gdrd++GnyWdG+ Wrdr+yW+ h            yew++nrW       ++++ k   k++er++r ++ drd+hr+ 
  CTQ29229.1  23 EITLLPSVKLQIGDRDNYGNYWDGGSWRDRDYWRRH------------YEWRDNRWhrhdngWHKGWYKgrDKAWERGYRAGWNDRDDHRGG 102
                 69**********************************............55555555444444489997533689***************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 938.23
//
Query:       CTQ29230.1  [L=413]
Description: manganese/divalent cation transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.8e-125  417.6  28.9   4.9e-125  417.2  28.9    1.1  1  Nramp          Natural resistance-associated macrophage prote
  ------ inclusion threshold ------
       0.27   11.3   5.8       0.11   12.6   1.4    2.7  2  AA_permease_C  C-terminus of AA_permease


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.2  28.9  5.4e-129  4.9e-125       1     357 [.      38     383 ..      38     384 .. 0.98

  Alignments for each domain:
  == domain 1  score: 417.2 bits;  conditional E-value: 5.4e-129
       Nramp   1 iatdlqaGaqfGykLlwvlllstllaillqelsarLGlvTgkglaelirerlpkkvsillwilaelaiiatdlaeviGaAialnllfgipllvgvlita 99 
                 +at++qaGa+fGy+Llwv+++++l+a+l+q lsa+LG++Tgk+lae ir+++p++v++++w++ae++++atdlae+iGaAi+++l++g++ll g+++t+
  CTQ29230.1  38 FATNIQAGASFGYQLLWVVVWANLMAMLIQVLSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLVLGVSLLQGAVLTG 136
                 69************************************************************************************************* PP

       Nramp 100 vlvllllflekggyrklEaliialvlvialsFiaelflvkpdwgevlkglvvPslpgkeslllavgilGatvmphnlflhsslvqerkitidrsekeea 198
                 v ++l+l+l+++g + lE++i +l+l++a+++++el++++p ++ + kglv+P+lp+ e+++la+g+lGat+mph+++lhssl+q+ +    ++++   
  CTQ29230.1 137 VATFLILMLQRRGQKPLEKVIGGLLLFVAVAYVVELIFSQPALAPLTKGLVIPTLPNGEAVFLAAGVLGATIMPHVIYLHSSLTQHLH--GGTRKE--R 231
                 *************************************************************************************999..433444..6 PP

       Nramp 199 lkyeriDtiialivaflinlailivaAavly.sggkdvesledaaeaLepllGskaasvlFaigLlaaGlsStitgtlagqyvmegflglrislwlrrl 296
                 ++ +r+D++ia+++a+++nla++++aAa+++ +g++ v++l++a+ +Lepll+ +aa+++F++ L+aaGlsSt++gtlagq+vm+gf++++i+lw rr 
  CTQ29230.1 232 YNATRWDVAIAMTIAGFVNLAMMATAAAAFHfNGHTGVADLDQAYMTLEPLLS-HAAATIFGLSLIAAGLSSTVVGTLAGQVVMQGFIRFHIPLWFRRA 329
                 *****************************************************.7*******************************************8 PP

       Nramp 297 itralafvpalivilligaelelvkllvlsqvllslllPfaliplllltsskklMGefkns 357
                 it    + p ++vill+ ++++   +lv+sqvlls+++ +al+pll++ts+ klMG+++n+
  CTQ29230.1 330 IT----MLPSFVVILLGLDPTR---ILVMSQVLLSFGIALALVPLLIFTSNAKLMGDLVNT 383
                 88....****************...**********************************97 PP

>> AA_permease_C  C-terminus of AA_permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       0.6   5.4e+03      29      34 ..     317     322 ..     308     339 .. 0.59
   2 ?   12.6   1.4   1.2e-05      0.11       8      42 ..     364     398 ..     362     400 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.6
  AA_permease_C  29 wirfgv 34 
                    +irf +
     CTQ29230.1 317 FIRFHI 322
                    555554 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.2e-05
  AA_permease_C   8 flPalsIlvNiyLmlqLdsltwirfgvwmliglli 42 
                    ++P+l    N  Lm  L  + w+r + w ++ +++
     CTQ29230.1 364 LVPLLIFTSNAKLMGDLVNTRWVRGIGWAIVAIVV 398
                    6999999************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2868.03
//
Query:       CTQ29231.1  [L=400]
Description: nucleoside (except guanosine) transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-62  209.9  14.9    3.5e-62  209.9  14.9    2.4  3  Nucleos_tra2_C  Na+ dependent nucleoside transporter C-termin
    6.5e-20   71.5   4.7    6.5e-20   71.5   4.7    4.0  3  Nucleos_tra2_N  Na+ dependent nucleoside transporter N-termin
      2e-06   28.0   8.1      2e-06   28.0   8.1    4.3  4  Gate            Nucleoside recognition


Domain annotation for each model (and alignments):
>> Nucleos_tra2_C  Na+ dependent nucleoside transporter C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2      0.88   5.2e+03       4      17 ..       9      22 ..       6      48 .. 0.60
   2 ?   -1.1   0.9      0.23   1.4e+03     127     127 ..     150     150 ..      57     189 .. 0.56
   3 !  209.9  14.9   5.9e-66   3.5e-62       1     206 [.     193     398 ..     193     399 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.88
                    HHHHHHHHHHHHHH CS
  Nucleos_tra2_C  4 aAsvmsapaalais 17
                     A+v+ a+ al++s
      CTQ29231.1  9 LAIVVVAILALLVS 22
                    44444444444443 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.23
                     H CS
  Nucleos_tra2_C 127 e 127
                     +
      CTQ29231.1 150 N 150
                     2 PP

  == domain 3  score: 209.9 bits;  conditional E-value: 5.9e-66
                     HHHHHHHHHHHHHHHHHHHHS---S-...........---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..T-TT--HHH CS
  Nucleos_tra2_C   1 yllaAsvmsapaalaiskllvPeteesktkk.keekeeekanvleaaaegaldglklalniaamliafvalvalinallgwlgs..gleelslel 92 
                     y++aA v+++++++++ +l++P++ e+++++ ++++ +e ++++e+++e++l+g+k+a+++aamli+f+al++++nal++ + +  g+ ++s++ 
      CTQ29231.1 193 YVVAALVLNMFSTFIVLSLINPYRVEESEENlQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALISALNALFATVTGwfGY-SISFQG 286
                     89*********************98766666688888899***************************************999776666.9***** PP

                     HHHHHHHHHHHHTT--GGGHHHHHHHHHHHHHT-HHHHHHHHGGGGSSS---HHHHHHHHHHH-S--STHHHHHHHHHHHHH-GGGHHHHHHHHH CS
  Nucleos_tra2_C  93 ilgyvfaplafllGvpwedalkvgsllGtKlvlnefvayqeLsklkkkgelserseliatyaLcgFanfssigiqiGglgalaperrkdiaklgl 187
                     ilgy+f+p+a+++Gvp ++al+vgs+++tKlv nefva+++L+k++  ++ls+r+e i++++L++Fanfssigi+ G++++l++e+ ++++++gl
      CTQ29231.1 287 ILGYIFYPVAWVMGVPASEALQVGSIMATKLVSNEFVAMMDLQKIA--STLSPRAEGIISIFLVSFANFSSIGIIAGAIKGLNEEQGNVVSRFGL 379
                     ********************************************98..9********************************************** PP

                     HHHHHHHHHHHHHHHHHHH CS
  Nucleos_tra2_C 188 kallaGtlasllsAaiaGl 206
                     k+++++tl+s+lsA+ia+l
      CTQ29231.1 380 KLVYGSTLVSVLSASIAAL 398
                     *****************87 PP

>> Nucleos_tra2_N  Na+ dependent nucleoside transporter N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   4.7   1.1e-23   6.5e-20       1      74 []       9      82 ..       9      82 .. 0.98
   2 ?   -2.8   0.4       1.7   9.9e+03      35      53 ..      87     105 ..      86     111 .. 0.68
   3 ?   -1.3   4.0      0.59   3.5e+03      23      52 ..     192     239 ..     177     290 .. 0.63

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 1.1e-23
                    HHHHHHHHHHHHT-S-GGG--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG CS
  Nucleos_tra2_N  1 lGllvllliawllSenrkainwrtVigglllQfvlAlfvlktpagrdvfkalsdlvqalldfakaGasFvFGsl 74
                    l ++v+ ++a+l+S++r++i++r+V+  l+++++lA+f+l+ ++g  ++k++s+++++ll+fa++G++FvFG++
      CTQ29231.1  9 LAIVVVAILALLVSHDRQKIRIRYVVQLLVIEVLLAWFFLNSDIGLGFVKGFSEMFEKLLGFANEGTNFVFGGM 82
                    5799********************************************************************85 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.7
                     HHHHHHTSHHHHHHHHHHH CS
  Nucleos_tra2_N  35 lAlfvlktpagrdvfkals 53 
                     lA+f+lk+  +  +++al 
      CTQ29231.1  87 LAFFFLKVLCPIVFISALI 105
                     7899998877777766665 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.59
                     HHHHHHHHHHHHHHHHHHT..................SHHHHHHHHHH CS
  Nucleos_tra2_N  23 rtVigglllQfvlAlfvlk..................tpagrdvfkal 52 
                     ++V+++l+l+++  ++vl                   +  g+++f++l
      CTQ29231.1 192 KYVVAALVLNMFSTFIVLSlinpyrveeseenlqmsnLHEGQSFFEML 239
                     566666666666666666544444444444444444444444444444 PP

>> Gate  Nucleoside recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3       0.3   1.8e+03       7      54 ..      36      60 ..       7      82 .. 0.61
   2 !   28.0   8.1   3.4e-10     2e-06       2     110 ..      92     190 ..      91     218 .. 0.93
   3 ?    2.0   0.7     0.041   2.5e+02      47      69 ..     195     226 ..     190     272 .. 0.56
   4 !    4.9   9.6     0.005        30       9     108 ..     270     362 ..     249     366 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.3
        Gate  7 iillasiliwflss....ssllgrigkllepvfaplgqeldwkatvslltgf 54
                ++++ ++l wf+ +                                +++ gf
  CTQ29231.1 36 LLVIEVLLAWFFLNsdigL---------------------------GFVKGF 60
                4444455555554433332...........................333332 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 3.4e-10
        Gate   2 lkagpiillasiliwflssssllgrigkllepvfap...lgqeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpksalafllfvllytp 97 
                 lk++  i+++s+li++l++  +l ++ ++++ v+++   +g+ ++ +a+ sl++g++++ ++++ +                + ++++ ++  ++++t+
  CTQ29231.1  92 LKVLCPIVFISALIGILQHIRILPIVIRAIGTVLSKvngMGKLESFNAVSSLILGQSENFIAYKDI-------------LGKMSRNRMYTMAATAMSTV 177
                 8999********************************85555***********************99.............677899999*********** PP

        Gate  98 cvatlavivrelg 110
                 +++++++++ +l 
  CTQ29231.1 178 SMSIVGAYMTMLQ 190
                 *****99998775 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.041
        Gate  47 tvslltgfaakevvvgtlgtly.........t 69 
                 +++l++++++  +v+++++  +         +
  CTQ29231.1 195 VAALVLNMFSTFIVLSLINPYRveeseenlqM 226
                 67788888877777777744445555554431 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.005
        Gate   9 llasiliwflssssllgrigkllepvfaplg..qeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpksalafllfvllytpcvatlavi 105
                 l+a++  wf +s s+ g++g ++ pv   +g   ++  ++   + t ++++e v+ +        l++++++   +++ ++ +++v++++  ++++++i
  CTQ29231.1 270 LFATVTGWFGYSISFQGILGYIFYPVAWVMGvpASEALQVGSIMATKLVSNEFVAMMD-------LQKIASTLSPRAEGIISIFLVSFAN--FSSIGII 359
                 4455555566669999999999999988899666666666666777777666666553.......444566666666699********99..8888888 PP

        Gate 106 vre 108
                 ++ 
  CTQ29231.1 360 AGA 362
                 775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1103  (0.0615204); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2892.52
//
Query:       CTQ29232.1  [L=605]
Description: putative diguanylate cyclase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-56  190.5   0.1    4.9e-56  189.9   0.1    1.2  1  EAL       EAL domain
    1.3e-18   67.2  19.8    2.2e-18   66.5  19.8    1.2  1  MASE1     MASE1
    2.4e-06   27.4   0.0    4.3e-06   26.6   0.0    1.4  1  GGDEF     Diguanylate cyclase, GGDEF domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.9   0.1   8.1e-60   4.9e-56       4     238 .]     375     600 ..     373     600 .. 0.96

  Alignments for each domain:
  == domain 1  score: 189.9 bits;  conditional E-value: 8.1e-60
                 HHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--CHHCC-CCH CS
         EAL   4 lrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlspasladeef 102
                 +++ l+++ l ly QP+ + +     + e+l+r+++ d  +i+p++f+pl+ +++l +++d +vle  +++l++      ++ ++s+nl pa+l+++  
  CTQ29232.1 375 VKQVLKDRALMLYAQPIQNPEGEG--YHEILTRMRCGDS-VIMPDRFIPLIVQFNLSQRFDMLVLETLFSMLHK-----HPGQRFSVNLLPATLMQKNS 465
                 56778999**********777666..9*********999.89****************************9988.....67889*************** PP

                 HHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHH CS
         EAL 103 leelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkaliala 201
                 + ++ +l++++ +sp+ +++e+te++++++ ++ + ++l++Lra G+ ia+ddfgtgy+++++l++l+ diiK+d+ +++d+ +d+ ++ +vk+++++a
  CTQ29232.1 466 AGQIIALFQRYSVSPELITIEVTEEQAFSNADTSR-QNLEALRAFGCAIAIDDFGTGYANYERLKHLQADIIKIDGCFVRDILTDPLDAIMVKSIVEMA 563
                 *****9999****************9999999999.*************************************************************** PP

                 CCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 202 kelgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 ++ ++ vvae Ve+e q  +l elg++++QGyl++kp
  CTQ29232.1 564 RAKQMSVVAEYVESEPQKARLLELGVNYLQGYLIGKP 600
                 ************************************9 PP

>> MASE1  MASE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5  19.8   3.6e-22   2.2e-18     107     293 ..       5     189 ..       2     196 .. 0.93

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 3.6e-22
       MASE1 107 kdwllfvvaaaiiaalllaiiglalllllgliplaslssswltwwlgsatGvlvvaplllllrrylrqrhrlsafveqdlaplaakllllfalllllll 205
                 ++w +f++++++ ++++la+ ++a++l++   ++ +  + +++  +++++++l+++ +l++ +r++ ++ + ++f++q+  p  a   + f+l ++++l
  CTQ29232.1   5 IFWGGFFAPVLLKITMYLAGQYFAFPLAITSYFGSMPLIYTVIDIQSLISAALIFTTFLYYPMRMIISPRYARRFWQQECLPWLAPQYRSFTLYWFIAL 103
                 5999*********************************************************************************************** PP

       MASE1 206 vllllllllpfednsplayLllppvlwaAfrfgvrgasl.allllavllilftaqgqgpfvqdsgaessaaillqlflavlalvaLlvs 293
                 +++l+ll++p++ +++++  +l+pv+++++  g+  +   +l +++ + ++ ++ ++ +f+q  ++e+s+ ++l++++++++++ + ++
  CTQ29232.1 104 AVILTLLCAPYQSEFIAG--YLVPVIFIVYFIGISRIGHaLLRISWSVSAFLLVVYNKNFLQGVQSEYSLSFVLSVLISFTICLFY-MA 189
                 ******************..*************9765442466778888888888****************************999.44 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   7.3e-10   4.3e-06       3     119 ..     208     313 ..     206     329 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 7.3e-10
                 B-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHHHH CS
       GGDEF   3 hDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaaelae 101
                  D+lTgLpN r+le++l++  q+a        +  l +dn+  +  +yG  +G ++ +++ ++L+  l   d v+++ g e++++l   + +  ++l +
  CTQ29232.1 208 EDPLTGLPNLRALESHLQSCPQQA--------ICSLRIDNLDFLSRHYGLMMGVDCKRQIIRALQPLLGAADKVFQVPGSELILVLDGPEPS--SRL-N 295
                 6************99998877777........6679**************************************************999965..333.3 PP

                 HHHHHHHCS-EEETTCCE CS
       GGDEF 102 rirrllaklkepvelsge 119
                  + + l++ k +++++  
  CTQ29232.1 296 HMVAVLNHKKFSWHNQPL 313
                 344455555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4237.22
//
Query:       CTQ29233.1  [L=110]
Description: membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-09   35.9  13.3      5e-09   35.7  13.3    1.0  1  MASE1     MASE1
  ------ inclusion threshold ------
        3.4    5.9  11.3        4.1    5.6  11.3    1.0  1  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> MASE1  MASE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7  13.3   5.5e-13     5e-09       2      95 ..      14     104 ..      13     108 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 5.5e-13
       MASE1   2 lllllllyallialglslalalvssggvplWlPsGlalaalllfgrrgwpgillaavlasislfllfagnlllalaiaavntleallgalllrr 95 
                 l++++ l+a+  a+++s++ +++++ + ++WlP  +++++ ++fgr+++ +++la+ +++     l+++ l++a+++++++++++++++++l +
  CTQ29233.1  14 LAFIICLVAIPLARFISPQTIIDGNLIYIAWLPISVMFSVIFIFGRYAIAPLILAFAITN---SFLIKLTLPQAFILLFCQLFAVFVSCAILGN 104
                 78899999999999999*******************************************...***************************9865 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  11.3   0.00046       4.1      15      89 ..      10     101 ..       6     109 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.00046
     DUF2070  15 kvsllliillalligllaflssk..................lfgillfglpalvaflltlpvlrilggrltykrslflalltelivviislla 89 
                 k +ll+ i++ ++i l+ f+s +                  +  i++fg  a++ ++l   + +++ ++lt+ + +f+ l+++l++v++s + 
  CTQ29233.1  10 KKTLLAFIICLVAIPLARFISPQtiidgnliyiawlpisvmFSVIFIFGRYAIAPLILAFAITNSFLIKLTLPQ-AFILLFCQLFAVFVSCAI 101
                 54555555555556777777766999999999999999998888888888888888888888888888888776.566788999998877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 913.82
//
Query:       CTQ29234.1  [L=88]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       187  (0.01043); expected 358.6 (0.02)
Passed bias filter:                      158  (0.00881254); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 712.59
//
Query:       CTQ29235.1  [L=117]
Description: putative nucleic acid-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-50  171.1   0.0    1.3e-50  170.9   0.0    1.0  1  DUF1323          Putative transcription regulator (DUF1323)
    4.7e-05   23.3   0.0    8.8e-05   22.5   0.0    1.6  1  HTH_29           Winged helix-turn helix
    8.5e-05   22.2   0.3    0.00028   20.6   0.0    1.9  2  HTH_23           Homeodomain-like domain
    0.00014   22.0   0.5    0.00052   20.2   0.5    1.8  1  HTH_Tnp_Mu_1     Mu DNA-binding domain
    0.00051   20.2   0.0    0.00085   19.5   0.0    1.6  1  HTH_17           Helix-turn-helix domain
    0.00065   19.5   0.0      0.001   18.9   0.0    1.3  1  Terminase_5      Putative ATPase subunit of terminase (gpP-li
    0.00076   19.5   0.0     0.0013   18.8   0.0    1.5  1  HTH_3            Helix-turn-helix
     0.0011   19.1   0.2     0.0028   17.7   0.0    1.8  2  HTH_28           Helix-turn-helix domain
     0.0015   18.4   0.0     0.0039   17.0   0.0    1.8  1  DUF4224          Domain of unknown function (DUF4224)
     0.0017   18.1   0.3     0.0085   15.8   0.0    2.0  2  HTH_38           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.017   15.5   0.0      0.047   14.0   0.0    1.7  2  HTH_31           Helix-turn-helix domain
      0.024   14.6   0.1      0.084   12.9   0.0    2.0  2  HTH_Crp_2        Crp-like helix-turn-helix domain
      0.026   14.8   0.0       0.11   12.9   0.0    1.9  2  ANT              Phage antirepressor protein KilAC domain
      0.057   13.0   0.0       0.14   11.7   0.0    1.6  1  HTH_24           Winged helix-turn-helix DNA-binding
       0.18   11.6   0.1        6.5    6.7   0.0    2.2  2  Glycos_trans_3N  Glycosyl transferase family, helical bundle 
        0.4   10.8   1.1       0.78    9.9   0.1    1.9  3  HTH_Tnp_1_2      Helix-turn-helix of insertion element transp


Domain annotation for each model (and alignments):
>> DUF1323  Putative transcription regulator (DUF1323)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.9   0.0   1.1e-53   1.3e-50       1     121 [.       6     116 ..       6     117 .] 0.99

  Alignments for each domain:
  == domain 1  score: 170.9 bits;  conditional E-value: 1.1e-53
     DUF1323   1 mtpeelaellGyarqtinrWvRkegWkteplpGvkGGkarlvlideqvrefirnaealrnsaalyrveetlaeyavtvdaelealliealeeltpseqk 99 
                 mtpee+a+l+Gy+rqtin+WvRkegW+t+p+pGv+GGkarlv+++eqvrefir+a+         rv+et++ y + +d++le+ll+++ +eltpseqk
  CTQ29235.1   6 MTPEEIAHLTGYSRQTINKWVRKEGWQTSPRPGVQGGKARLVHVNEQVREFIRSAQ---------RVAETPGIY-SPHDSDLESLLLTLSKELTPSEQK 94 
                 9*******************************************************.........*********.899********************* PP

     DUF1323 100 klasllsreGiagllaRLgird 121
                 +l+sll+reGi+gll RLgird
  CTQ29235.1  95 QLMSLLLREGITGLLLRLGIRD 116
                 *********************8 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   7.8e-08   8.8e-05       8      35 ..       2      28 ..       1      48 [. 0.84

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 7.8e-08
      HTH_29  8 laeGvstvsqiAkllglsrrtvyrwlkr 35
                l+e + t+ +iA+l+g+sr+t+++w++ 
  CTQ29235.1  2 LKERM-TPEEIAHLTGYSRQTINKWVRK 28
                67888.9******************986 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.5e-07   0.00028      13      40 ..       1      28 [.       1      32 [. 0.93
   2 ?   -1.4   0.0       2.1   2.3e+03       8      19 ..      95     106 ..      92     109 .. 0.56

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.5e-07
      HTH_23 13 llaeGlsvreIAreLgvsrrTvyrwlkr 40
                +l+e+++++eIA + g sr+T+ +w+++
  CTQ29235.1  1 MLKERMTPEEIAHLTGYSRQTINKWVRK 28
                7889*********************998 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.1
      HTH_23   8 lrillllaeGls 19 
                 +++ lll+eG++
  CTQ29235.1  95 QLMSLLLREGIT 106
                 555556666554 PP

>> HTH_Tnp_Mu_1  Mu DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.5   4.7e-07   0.00052       5     110 ..      13     109 ..       9     116 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.7e-07
                   TS-S...SHHHHHHHHHHCT--EEEESSSTTTTEEEE-GGGS-HHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  HTH_Tnp_Mu_1   5 glPGlPktaagvtkkAkkegWkkrkreGvkgGkAvEYdvnslPketraalllrlGllgaslgekevaselvetkderliallsklepdeqrkaaell 101
                    l G   + + + k  +kegW+   r Gv+gGkA   +vn   ++ r+ +   +   ++      + s+    ++  l +l ++l+p eq++++ ll
    CTQ29235.1  13 HLTG--YSRQTINKWVRKEGWQTSPRPGVQGGKARLVHVN---EQVREFIRSAQRVAETPG----IYSPHDSDLESLLLTLSKELTPSEQKQLMSLL 100
                   5556..5677899999********************9*99...677777722222233332....334444444555666778899**********9 PP

                   XXXXXXXXX CS
  HTH_Tnp_Mu_1 102 skaGlkall 110
                    + G+ +ll
    CTQ29235.1 101 LREGITGLL 109
                   999998876 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   7.5e-07   0.00085       2      24 ..       6      28 ..       5      59 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 7.5e-07
      HTH_17  2 ltveEaAelLgvsrstvyrlirr 24
                +t+eE+A l g sr+t+ +++r+
  CTQ29235.1  6 MTPEEIAHLTGYSRQTINKWVRK 28
                9********************97 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     9e-07     0.001      15      41 ..       7      33 ..       5      46 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9e-07
  Terminase_5 15 rvaeIAeelglkeatVysWkkrdewdd 41
                 ++ eIA   g +++t+  W+++++w+ 
   CTQ29235.1  7 TPEEIAHLTGYSRQTINKWVRKEGWQT 33
                 799**********************86 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.2e-06    0.0013       8      36 ..       4      35 ..       1      39 [. 0.81

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.2e-06
                TTHHHHHHHHHHTSSHHHHHHHHTT...SSCS CS
       HTH_3  8 lglsqeeLAeklGvsrstisriEnG...ernP 36
                  ++ ee+A ++G sr+ti+++ +    +++P
  CTQ29235.1  4 ERMTPEEIAHLTGYSRQTINKWVRKegwQTSP 35
                56899******************995555555 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.5e-06    0.0028      10      35 ..       3      28 ..       1      33 [. 0.87
   2 ?   -2.7   0.0       6.2     7e+03      37      44 ..     101     108 ..      95     113 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.5e-06
      HTH_28 10 aaGhsvreaArelgisrrtvyrWikr 35
                ++ ++  e+A++ g sr+t+ +W+++
  CTQ29235.1  3 KERMTPEEIAHLTGYSRQTINKWVRK 28
                445699******************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.2
      HTH_28  37 eegGiagL 44 
                   +Gi gL
  CTQ29235.1 101 LREGITGL 108
                 45688888 PP

>> DUF4224  Domain of unknown function (DUF4224)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.5e-06    0.0039       2      29 ..       6      32 ..       5      38 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.5e-06
     DUF4224  2 LtpeElaeLTGykrrsaQakwLranGip 29
                +tpeE+a LTGy r +   kw r++G+ 
  CTQ29235.1  6 MTPEEIAHLTGYSR-QTINKWVRKEGWQ 32
                8***********86.5789999999996 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.6e-06    0.0085      16      42 ..       1      27 [.       1      29 [. 0.92
   2 ?   -0.1   0.1      0.72     8e+02       3      20 ..      86     104 ..      85     106 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.6e-06
      HTH_38 16 llaeGlslreIArrLgrspsTIsRElk 42
                +l+e ++  eIA + g+s++TI++ ++
  CTQ29235.1  1 MLKERMTPEEIAHLTGYSRQTINKWVR 27
                68999******************9887 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.72
      HTH_38   3 khLsleeReeIerll.aeG 20 
                 k L+++e  ++  ll  eG
  CTQ29235.1  86 KELTPSEQKQLMSLLlREG 104
                 6799999999988852666 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.2e-05     0.047      13      57 ..       4      50 ..       2      56 .. 0.81
   2 ?   -1.8   0.0       3.8   4.3e+03      37      51 ..      68      81 ..      59      84 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.2e-05
      HTH_31 13 aGLsqeevAerlgvsestlsrlEq..Grrgrpspavlealaralgld 57
                ++++ ee A ++g+s+ t++++ +  G ++ p+p+v    ar++ + 
  CTQ29235.1  4 ERMTPEEIAHLTGYSRQTINKWVRkeGWQTSPRPGVQGGKARLVHVN 50
                589*******************9987777788888877777766665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.8
      HTH_31 37 Grrgrpspavleala 51
                G    p  ++le+l+
  CTQ29235.1 68 GIY-SPHDSDLESLL 81
                344.68888898886 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.5e-05     0.084      21      42 ..       5      26 ..       1      28 [. 0.88
   2 ?   -1.3   0.1         2   2.3e+03      49      52 ..      95      98 ..      79     116 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.5e-05
                EHHHHHHHHHTTSSHHHHHHHH CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsril 42
                ++t ee+A++ G +r+t+++  
  CTQ29235.1  5 RMTPEEIAHLTGYSRQTINKWV 26
                799***************9866 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2
                TSEE CS
   HTH_Crp_2 49 glis 52
                +l s
  CTQ29235.1 95 QLMS 98
                3333 PP

>> ANT  Phage antirepressor protein KilAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.5e-05      0.11      23      52 ..       5      34 ..       3      59 .. 0.91
   2 ?   -0.6   0.0       1.4   1.6e+03      31      49 ..      86     105 ..      77     107 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.5e-05
         ANT 23 sititeiAkllgigenrlfelLrekgilyr 52
                 +t +eiA+l g +++  +++ r++g++ +
  CTQ29235.1  5 RMTPEEIAHLTGYSRQTINKWVRKEGWQTS 34
                57889**********************976 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.4
         ANT  31 kllg.igenrlfelLrekgi 49 
                 k+l    +++l+ lL ++gi
  CTQ29235.1  86 KELTpSEQKQLMSLLLREGI 105
                 55555678999999999987 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012      0.14      16      38 ..       4      26 ..       2      28 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
      HTH_24 16 prisqreLAerlglSpstvnrrl 38
                 r++  e+A  +g S++t+n+ +
  CTQ29235.1  4 ERMTPEEIAHLTGYSRQTINKWV 26
                69*****************9855 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0058       6.5      46      57 ..       5      16 ..       1      21 [. 0.78
   2 ?    2.9   0.0     0.087        98      11      28 ..      86     103 ..      78     107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0058
                     ---HHHHHHHHH CS
  Glycos_trans_3N 46 GetaeEiaalae 57
                     ++t+eEia l+ 
       CTQ29235.1  5 RMTPEEIAHLTG 16
                     4*********96 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.087
                      .---HHHHHHHHHHHHTT CS
  Glycos_trans_3N  11 eeLtaeeirfaihgilkg 28 
                      +eLt++e +++++ +l  
       CTQ29235.1  86 KELTPSEQKQLMSLLLRE 103
                      79**********998875 PP

>> HTH_Tnp_1_2  Helix-turn-helix of insertion element transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1    0.0007      0.78      25      50 ..       4      29 ..       2      33 .. 0.91
   2 ?   -1.7   0.0       2.8   3.1e+03      49      61 ..      53      65 ..      44      67 .. 0.66
   3 ?   -3.4   0.0       9.3     1e+04      10      19 ..      91     100 ..      82     103 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0007
                 --S-HHHHHHHHTS-HHHHHHHHH-H CS
  HTH_Tnp_1_2 25 ekltldeiaeevgvsrsTlykWkkkk 50
                 e++t +eia+  g sr+T+ kW +k+
   CTQ29235.1  4 ERMTPEEIAHLTGYSRQTINKWVRKE 29
                 58999*****************9886 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.8
                 -HHHHHHHHHHHH CS
  HTH_Tnp_1_2 49 kkeFieyvnelae 61
                  +eFi+  +++ae
   CTQ29235.1 53 VREFIRSAQRVAE 65
                 4567776666665 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 9.3
                  HHHHHHHHHH CS
  HTH_Tnp_1_2  10 akQkkaaell 19 
                  ++Qk+++ ll
   CTQ29235.1  91 SEQKQLMSLL 100
                  4566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 922.26
//
Query:       CTQ29236.1  [L=130]
Description: putative nucleic acid-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-53  178.8   0.0      5e-53  178.6   0.0    1.0  1  DUF1323         Putative transcription regulator (DUF1323)
    7.7e-06   26.0   0.0    1.5e-05   25.0   0.0    1.5  1  HTH_17          Helix-turn-helix domain
    5.3e-05   22.9   0.0    0.00012   21.8   0.0    1.6  1  HTH_23          Homeodomain-like domain
     0.0008   19.4   0.4     0.0013   18.7   0.1    1.6  2  HTH_29          Winged helix-turn helix
      0.002   17.7   0.0     0.0058   16.3   0.0    1.7  2  Crp             Bacterial regulatory proteins, crp family
     0.0022   17.9   0.0     0.0048   16.8   0.0    1.7  1  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0099   15.7   0.0      0.021   14.7   0.0    1.5  1  YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitox
  ------ inclusion threshold ------
       0.01   15.7   0.0       0.05   13.5   0.0    2.0  2  MarR_2          MarR family
      0.015   15.7   0.1      0.049   14.1   0.0    1.8  2  HTH_26          Cro/C1-type HTH DNA-binding domain
      0.015   15.1   0.2      0.028   14.3   0.0    1.5  1  Terminase_5     Putative ATPase subunit of terminase (gpP-lik
      0.017   14.9   0.0      0.064   13.0   0.0    1.8  2  HTH_38          Helix-turn-helix domain
      0.017   15.2   0.0      0.029   14.4   0.0    1.4  1  HTH_3           Helix-turn-helix
      0.029   14.5   0.0      0.037   14.1   0.0    1.2  1  Integrase_1     Integrase
      0.081   13.1   0.1       0.31   11.2   0.0    2.0  2  AbiEi_4         Transcriptional regulator, AbiEi antitoxin
      0.088   12.9   0.0       0.16   12.1   0.0    1.5  1  Phage_CI_repr   Bacteriophage CI repressor helix-turn-helix d
      0.093   12.8   0.1        0.4   10.8   0.0    2.1  2  HTH_20          Helix-turn-helix domain
       0.12   12.0   0.0       0.33   10.5   0.0    1.7  2  HTH_24          Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> DUF1323  Putative transcription regulator (DUF1323)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.6   0.0   4.7e-56     5e-53       1     121 [.       8     128 ..       8     129 .. 0.99

  Alignments for each domain:
  == domain 1  score: 178.6 bits;  conditional E-value: 4.7e-56
     DUF1323   1 mtpeelaellGyarqtinrWvRkegWkteplpGvkGGkarlvlideqvrefirnaealrnsaalyrveetlaeyavtvdaelealliealeeltpseqk 99 
                 mtp+ela++lG+arqtinrWvR+++W+te++pGvkGG+arlv+id+ vref++n++a+r+  ++++++e++++y v+++++++++++e+l+ +tp+eq 
  CTQ29236.1   8 MTPAELADCLGLARQTINRWVREKQWRTEAIPGVKGGRARLVVIDQPVREFLTNIPARRHLLTDNHLAESPGAYLVNEADAIWRQITETLQLMTPAEQL 106
                 9************************************************************************************************** PP

     DUF1323 100 klasllsreGiagllaRLgird 121
                 +l++ll+reGi+g+laRLgi++
  CTQ29236.1 107 QLRDLLAREGISGFLARLGIAS 128
                 ********************85 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.5e-08   1.5e-05       2      37 ..       8      48 ..       8      52 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.5e-08
      HTH_17  2 ltveEaAelLgvsrstvyrli.....rrgelpaakiGrrwr 37
                +t++E+A+ Lg+ r+t+ r++     r+  +p +k Gr ++
  CTQ29236.1  8 MTPAELADCLGLARQTINRWVrekqwRTEAIPGVKGGRARL 48
                8********************44444466999999988765 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.1e-07   0.00012      14      49 ..       4      41 ..       1      42 [. 0.86

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.1e-07
      HTH_23 14 laeGlsvreIAreLgvsrrTvyrw..lkryreeGlegl 49
                l+++++++e A+ Lg  r+T+ rw   k +r e ++g+
  CTQ29236.1  4 LKDKMTPAELADCLGLARQTINRWvrEKQWRTEAIPGV 41
                34589*******************98888988988886 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   1.2e-06    0.0013       6      61 ..       2      55 ..       1      57 [. 0.74
   2 ?   -3.3   0.0       8.9   9.4e+03      34      43 ..     110     119 ..     108     123 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.2e-06
      HTH_29  6 lllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrprn.rlseeq 61
                ++l++ + t++++A  lgl r+t++rw++   +++ +a+ ++  +gr r  ++++ +
  CTQ29236.1  2 MKLKDKM-TPAELADCLGLARQTINRWVRE-KQWRTEAI-PGVKGGRARLvVIDQPV 55
                5688889.9*******************98.66664443.44555777766666655 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8.9
      HTH_29  34 krfeegGlaa 43 
                 ++   +G+++
  CTQ29236.1 110 DLLAREGISG 119
                 5556677766 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.5e-06    0.0058       2      21 ..       7      26 ..       7      29 .. 0.93
   2 ?   -2.0   0.0       2.8     3e+03      14      26 ..     112     124 ..     112     125 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.5e-06
                E--HHHHHHHHTS-HHHHHH CS
         Crp  2 pmSRqdIAdylGlTrETVSR 21
                +m+  ++Ad lGl+r T++R
  CTQ29236.1  7 KMTPAELADCLGLARQTINR 26
                6999**************** PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.8
                 S-HHHHHHHHHHH CS
         Crp  14 lTrETVSRlLtrL 26 
                 l+rE +S  L rL
  CTQ29236.1 112 LAREGISGFLARL 124
                 6788777666666 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.6e-06    0.0048      21      44 ..       7      30 ..       3      54 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.6e-06
                EHHHHHHHHHTTSSHHHHHHHHHH CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilse 44
                ++t +elA++lGl r+t++r  +e
  CTQ29236.1  7 KMTPAELADCLGLARQTINRWVRE 30
                68999***************8865 PP

>> YdaS_antitoxin  Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     2e-05     0.021      12      41 ..      11      39 ..       8      42 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2e-05
  YdaS_antitoxin 12 kaLAealgvsqqaVsqWlkgkkqvpaervp 41
                    ++LA+ lg ++q++++W++ +kq  +e +p
      CTQ29236.1 11 AELADCLGLARQTINRWVR-EKQWRTEAIP 39
                    78****************7.5776666665 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.8e-05      0.05      19      43 ..       7      29 ..       3      30 .. 0.88
   2 ?   -0.6   0.0       1.2   1.3e+03      26      33 ..      92      99 ..      72     125 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.8e-05
                TSEEEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2 19 grdltvgelarrlglsksavsrilk 43
                   +t++ela+ lgl +++++r ++
  CTQ29236.1  7 K--MTPAELADCLGLARQTINRWVR 29
                3..8*****************9887 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.2
                HHHHHHTS CS
      MarR_2 26 elarrlgl 33
                +++++l+l
  CTQ29236.1 92 QITETLQL 99
                55555554 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.6e-05     0.049       8      37 ..       4      32 ..       1      38 [. 0.81
   2 ?   -1.9   0.0       4.5   4.8e+03       2      12 ..     108     118 ..     107     119 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.6e-05
      HTH_26  8 drgi.tkseLargtgisaatlsrlvkgkper 37
                 ++  t +eLa  +g+ ++t++r+v +k  +
  CTQ29236.1  4 LKDKmTPAELADCLGLARQTINRWVREK--Q 32
                55444********************998..4 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.5
      HTH_26   2 Lrelmadrgit 12 
                 Lr l+a  gi+
  CTQ29236.1 108 LRDLLAREGIS 118
                 89999999986 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.7e-05     0.028      15      41 ..       9      35 ..       6      46 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.7e-05
  Terminase_5 15 rvaeIAeelglkeatVysWkkrdewdd 41
                 ++ae A  lgl ++t+  W++  +w+ 
   CTQ29236.1  9 TPAELADCLGLARQTINRWVREKQWRT 35
                 89***********************85 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.1e-05     0.064      17      42 ..       4      29 ..       2      30 .. 0.92
   2 ?   -1.2   0.0       1.7   1.8e+03       5      20 ..     100     116 ..      98     118 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.1e-05
      HTH_38 17 laeGlslreIArrLgrspsTIsRElk 42
                l+ +++ +e A  Lg +++TI+R ++
  CTQ29236.1  4 LKDKMTPAELADCLGLARQTINRWVR 29
                5789*******************887 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.7
      HTH_38   5 LsleeReeIerlla.eG 20 
                 ++++e  ++ +lla eG
  CTQ29236.1 100 MTPAEQLQLRDLLArEG 116
                 68999999999986355 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.7e-05     0.029       7      33 ..       5      31 ..       1      36 [. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.7e-05
                HTTHHHHHHHHHHTSSHHHHHHHHTTS CS
       HTH_3  7 qlglsqeeLAeklGvsrstisriEnGe 33
                + +++ +eLA+ lG+ r+ti+r+ + +
  CTQ29236.1  5 KDKMTPAELADCLGLARQTINRWVREK 31
                568999*****************9976 PP

>> Integrase_1  Integrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.5e-05     0.037      51     144 ..      24     110 ..       5     115 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.5e-05
  Integrase_1  51 vqlakslktWkkaLergeerlrvvfGTKGgrpRevtile..realksavalaikvaeernGkLidkpdlslipd...ryreilrrlgltgessphslR 143
                  ++ +         +++++ r + + G KGgr R v i +  re l ++ a+   ++++   +L + p   l+ +    +r+i++ l+l+ + +   lR
   CTQ29236.1  24 INRW---------VREKQWRTEAIPGVKGGRARLVVIDQpvREFLTNIPARRHLLTDN---HLAESPGAYLVNEadaIWRQITETLQLMTPAEQLQLR 109
                  3333.........334455667899**********99999999999999997544444...4555555555544777999999999998888877777 PP

  Integrase_1 144 y 144
                   
   CTQ29236.1 110 D 110
                  5 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0003      0.31      15      37 ..       9      32 ..       8      41 .. 0.88
   2 ?   -1.5   0.0       2.8   2.9e+03      17      25 ..     109     118 ..     105     124 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0003
     AbiEi_4 15 ttrelea.aGispsalrrLvrkGw 37
                t +el+  +G+ +++++r+vr+  
  CTQ29236.1  9 TPAELADcLGLARQTINRWVREKQ 32
                789******************976 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.8
     AbiEi_4  17 relea.aGis 25 
                 r+l a  Gis
  CTQ29236.1 109 RDLLArEGIS 118
                 6666667776 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015      0.16      16      34 ..      11      29 ..       1      37 [. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
                   HHHHCCTT--HHHHHHHHH CS
  Phage_CI_repr 16 keLAdlLgiakssvstwvr 34
                    eLAd Lg a++++  wvr
     CTQ29236.1 11 AELADCLGLARQTINRWVR 29
                   69***************98 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00038       0.4      22      43 ..       5      26 ..       1      30 [. 0.87
   2 ?   -1.3   0.0       2.2   2.3e+03       7      16 ..      59      69 ..      50      71 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00038
                CTTB-HHHHHHHHTS-HHHHHH CS
      HTH_20 22 aegltaselaerldlskntlsy 43
                ++ +t++ela++l+l+++t+++
  CTQ29236.1  5 KDKMTPAELADCLGLARQTINR 26
                788***************9876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.2
                HS-.HHHHHHH CS
      HTH_20  7 Lah.PvRrril 16
                L++ P Rr +l
  CTQ29236.1 59 LTNiPARRHLL 69
                77889999887 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00032      0.33      16      39 ..       6      29 ..       2      31 .. 0.88
   2 ?   -2.7   0.0       4.2   4.4e+03      21      30 ..     109     118 ..     105     119 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00032
      HTH_24 16 prisqreLAerlglSpstvnrrlk 39
                 +++ +eLA+ lgl ++t+nr ++
  CTQ29236.1  6 DKMTPAELADCLGLARQTINRWVR 29
                579*****************9665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.2
      HTH_24  21 reLAerlglS 30 
                 r+L  r g+S
  CTQ29236.1 109 RDLLAREGIS 118
                 7888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1027.11
//
Query:       CTQ29237.1  [L=472]
Description: glutamyl-tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.8e-121  403.8   0.0   5.6e-121  403.2   0.0    1.2  1  tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic d
  ------ inclusion threshold ------
      0.015   15.2   0.1        0.4   10.7   0.0    2.4  2  HTH_15        Helix-turn-helix domain of alkylmercury lyase
      0.088   12.0   0.0       0.14   11.3   0.0    1.3  1  DUF3150       Protein of unknown function (DUF3150)


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.2   0.0  9.4e-125  5.6e-121       1     314 []       2     305 ..       2     305 .. 0.99

  Alignments for each domain:
  == domain 1  score: 403.2 bits;  conditional E-value: 9.4e-125
                   S-EEEE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE CS
  tRNA-synt_1c   1 kVrtRfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvc 97 
                   k++tRfaP+PtGyLH+G+a++al+++lfA+n++G+f+lRieDTd er+++ea+e+i++ ++wl+++wde+p+ q++rfd+++++++e+++ G+AY+c
    CTQ29237.1   2 KIKTRFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDTDLERSTPEAIEAIMDGMNWLNLQWDEGPYFQTKRFDRYNNVIDEMLEAGTAYKC 98 
                   699********************************************************************************************** PP

                   -STHHHHHHHHCCSSHSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSSGGGSSTEEEEEEESGGGSBTTTBTSTSEEE-HHHHHHHH CS
  tRNA-synt_1c  98 ectkeeleeereeqeklgskerdrydeenlklfeeemkkgkaegekavvRlkideessvefrDlvrgriklepqeihdlvivksdiyPtYdfavvid 194
                   +c+ke+le++reeq+++g  e++ryd+++++ +     +++a++e++vvR+ +++e+sv f+D++rg i++++qe++dl+i+++d++PtY+f+vv+d
    CTQ29237.1  99 YCSKERLEALREEQMAKG--EKPRYDGRCRHSH-----EHHADDEPCVVRFANPQEGSVIFDDQIRGPIEFSNQELDDLIIRRTDGSPTYNFCVVVD 188
                   *************99999..9************.....46999****************************************************** PP

                   HHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHHHHHHHCC CS
  tRNA-synt_1c 195 DaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpekerelftreel 291
                   D+++ ithv+r+e++++ntp++i++l+al+++vp+++h++++++ ++kklSKR+++++  ++q++++++l+ealln+l+rlGw+ ++++e+ftree+
    CTQ29237.1 189 DWDMAITHVIRGEDHINNTPRQINILKALNAPVPVYAHVSMINGDDGKKLSKRHGAVS--VMQYRDDGYLPEALLNYLVRLGWS-HGDQEIFTREEM 282
                   **********************************************************..9***********************.9*********** PP

                   CSSS.EEEEHHHHHHHHHHHHHH CS
  tRNA-synt_1c 292 iksfdlnresksleafdrkkLew 314
                   i+ f+l ++sks++af+++kL w
    CTQ29237.1 283 IEFFSLGAVSKSASAFNTDKLLW 305
                   ********************987 PP

>> HTH_15  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.7e-05       0.4      36      61 ..     390     415 ..     376     423 .. 0.92
   2 ?    1.7   0.0     0.041   2.4e+02      45      63 ..     450     468 ..     440     471 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.7e-05
      HTH_15  36 VtveeLAaatgrsveevrqaLaalps 61 
                 V +++LAa+  ++ e+v++a++a+++
  CTQ29237.1 390 VVRDKLAAISDWTAENVHHAIQATAD 415
                 7899*******************998 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.041
      HTH_15  45 tgrsveevrqaLaalpstE 63 
                   rsv+++++aLa +++ E
  CTQ29237.1 450 KSRSVDRINKALAFIAERE 468
                 479*********9988765 PP

>> DUF3150  Protein of unknown function (DUF3150)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.4e-05      0.14     130     213 ..     313     399 ..     301     425 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.4e-05
     DUF3150 130 vpsaetvaerlsfdyqlvkvqppeekeeskgLeeevkgLggq..lfaEiakearellekslag.....reevtrkaLrplrrireKlagLs 213
                 + +ae+va+ l+  ++  ++ + +      +L+e vk Lg++   ++Eia+++r ++e+ ++      ++++   a +pl+ +r+Kla++s
  CTQ29237.1 313 TLPAEYVATHLQWHIEQENIDTRNG----PQLAELVKLLGERckTLKEIAQSCRYFYEEFAEFdadaaKKHLRPVARQPLEVVRDKLAAIS 399
                 5677888888888777777765554....468899999998622689***********977667777788888888888999*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3680.33
//
Query:       CTQ29238.1  [L=84]
Description: hypothetical protein CH1034_260007 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       232  (0.0129399); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 696.61
//
Query:       CTQ29239.1  [L=308]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-45  155.0   3.9    1.6e-45  155.0   3.9    1.4  2  LysR_substrate  LysR substrate binding domain
    1.4e-22   79.4   3.9    7.1e-22   77.1   1.8    2.6  2  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.31   2.8e+03     100     131 ..      51      82 ..      33      87 .. 0.60
   2 !  155.0   3.9   1.8e-49   1.6e-45       2     207 ..      89     292 ..      88     294 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.31
                     GGCTSEEEEESTTSTHHHHHHHHHHCTTEECE CS
  LysR_substrate 100 dLadeplilleegsglrdlledalreaglkpr 131
                     d    + +l e+g  l  +le++l+e  +++r
      CTQ29239.1  51 DRTTREVVLTEAGQQLAGRLERLLDELTITLR 82 
                     44445556666666666666666666666655 PP

  == domain 2  score: 155.0 bits;  conditional E-value: 1.8e-49
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                     ++l+g+++++a++t++++l+p+ +a   +ryP++++ l+  +++ +l+ +++ge+D++i+ +p + ++l++++++ ep++l++++dhp+a  ++v
      CTQ29239.1  89 QQLSGTVKVAASQTISAHLIPQCIAHSNRRYPDIDFVLHDRPQQWVLESIRQGEVDFGIVIDPGPAADLQCEVVLAEPFLLLCREDHPFASLTEV 183
                     899******************************************************************************************** PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTC CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgr 191
                     ++++L+de+lil +  sg r l+++al +  ++++++ e+ + ++l  +v++G+Gi++lp++a+ + ++   l +  l +  ++r+l l++rk+r
      CTQ29239.1 184 PWQALQDERLILQDYASGSRPLIDAALSRLAIRANIVQEIGHPATLFPMVESGIGISVLPALAL-PLPQGSHLTVKRLTP-VMERQLMLACRKNR 276
                     ***************************************************************9.99*******999999.9************* PP

                     CCHHHHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidflrea 207
                      ls a++a+++++re+
      CTQ29239.1 277 SLSTAAQALWEIVREE 292
                     **************97 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   1.8   7.9e-26   7.1e-22       1      60 []       5      64 ..       5      64 .. 0.99
   2 ?    1.3   0.0     0.038   3.4e+02       7      23 ..     269     285 ..     267     286 .. 0.83

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 7.9e-26
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lrql++fv+va+++sf+rA e  glsq+avs+++k+LE++ gv+L++Rt+r ++LTeaG+
  CTQ29239.1  5 LRQLKVFVTVARARSFSRAGEMIGLSQSAVSHSVKELEHQTGVRLLDRTTREVVLTEAGQ 64
                79*********************************************************8 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.038
                 HHHHHHHSSHHHHHHHH CS
       HTH_1   7 fvavaeegsftrAAeeL 23 
                  +a  +++s++ AA++L
  CTQ29239.1 269 MLACRKNRSLSTAAQAL 285
                 56778999*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2318.35
//
Query:       CTQ29240.1  [L=59]
Description: hypothetical protein CH1034_260009 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0004   20.8   0.0     0.0031   17.9   0.0    1.9  2  SAM_1     SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.7e-07    0.0031      19      54 ..       2      38 ..       1      39 [. 0.96
   2 ?    1.2   0.0      0.03   5.3e+02       9      16 ..      49      56 ..      44      59 .] 0.81

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.7e-07
                GGHHHH.HTTTSSHHHHTTSCHHHHHHCTTTSHHHHH CS
       SAM_1 19 qYadlF.rageidgdaLlllteddLeklgvtllGHrk 54
                +Y+  F  +++id+ +L+  ++d+L++  v+++ Hr+
  CTQ29240.1  2 RYCAFFhLRNKIDLLHLFMNKKDELLSASVKSICHRR 38
                7**********************************95 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.03
                HHHHHHTT CS
       SAM_1  9 geWLesig 16
                 +WL+s g
  CTQ29240.1 49 DDWLKSVG 56
                69***988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 482.27
//
Query:       CTQ29241.1  [L=332]
Description: putative sodium/bile acid symporter family (mazG-like) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-100  336.6  23.8   1.7e-100  336.4  23.8    1.0  1  SBF_like  SBF-like CPA transporter family (DUF4137)
    2.9e-09   36.9  13.4    2.9e-09   36.9  13.4    2.4  2  SBF       Sodium Bile acid symporter family
  ------ inclusion threshold ------
        3.3    7.7   5.2        1.5    8.8   1.2    2.5  2  DUF4083   Domain of unknown function (DUF4083)


Domain annotation for each model (and alignments):
>> SBF_like  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.4  23.8  2.8e-104  1.7e-100       1     312 [.       8     315 ..       8     316 .. 0.98

  Alignments for each domain:
  == domain 1  score: 336.4 bits;  conditional E-value: 2.8e-104
    SBF_like   1 qwfllllilvillAslvPvfakaggtikaeyvikygValiFllsGlslsteellanlrnwrlhllvllisflltplivlalvsllkaaldpelliGlll 99 
                 + f+ +li+v+llAs++P+ ++   +++   ++++++al+F+++G++ls+e+++a+ ++wrlhl+v++++f+l+pl+++ ++  ++ + dp l+ G+++
  CTQ29241.1   8 DPFTATLITVVLLASFFPARGAFVPFFE--HLTTAAIALLFFMHGAKLSREAIIAGGSHWRLHLWVMCSTFILFPLLGVLFAWWAPVNVDPMLYSGFIY 104
                 5799******************877775..79******************************************************************* PP

    SBF_like 100 laalPtTvssnvvmtsqAgGnealalceavignllGvfltPalvqlllsgssvsvdyaevlkklllsvllPlvvGqvlqkifpklvkrlkkllkkvdsl 198
                 l++lP+Tv+s++++ts AgGn+a+a+c+a++++llG+f++P+lv++l++ ++++ ++++v  k++l++llP+v+G++ +++++++v+++kk++ k+d++
  CTQ29241.1 105 LCILPATVQSAIAFTSLAGGNVAAAVCSASASSLLGIFVSPLLVGVLMNLHGAGGSLEQV-GKIMLQLLLPFVLGHLSRPWIGDWVAKHKKWIGKTDQT 202
                 **************************************************9999999995.7************************************* PP

    SBF_like 199 vlllivytsfstafaqgaftsvshiillvifnvallLllvvlvillllarllklskedeiavlfcgsaKslalgvplisvlfgsnpqlgllllPlllyh 297
                 ++ll+vy++fs+a+++g++++v   +ll+i++v+l+Ll++v+++++++ar  +++k+dei+++fcgs+Ksla+g+p++++lf++ + lg+++lPl+++h
  CTQ29241.1 203 SILLVVYSAFSEAVVNGIWHKVGLGSLLFIVVVSLVLLAIVIAVNVFVARRCGFNKADEITIVFCGSKKSLANGIPMANILFPT-SILGIMVLPLMIFH 300
                 **********************************************************************************88.59************ PP

    SBF_like 298 liqlvvaavlvsrlr 312
                 +iql+v+avl++r++
  CTQ29241.1 301 QIQLMVCAVLARRYK 315
                 *************98 PP

>> SBF  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9  13.4   4.8e-13   2.9e-09      33     187 ..      71     214 ..      39     252 .. 0.83
   2 ?   -2.3   0.3       0.5     3e+03     134     143 ..     288     297 ..     263     312 .. 0.57

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 4.8e-13
         SBF  33 glvlqwvikPllmfilakillrdlklepelavGlilvglapgg.amsnvwtylakGdlelsvvlvalstllailltPlllyllaksleqttlkvpieei 130
                  +  ++++ Pll++++a+ +   ++++p l  G i +++ p + ++++++t la+G+++ +v    +s+ll i++ Pll+ +l++++       + e++
  CTQ29241.1  71 VMCSTFILFPLLGVLFAWWA--PVNVDPMLYSGFIYLCILPATvQSAIAFTSLAGGNVAAAVCSASASSLLGIFVSPLLVGVLMNLH---GAGGSLEQV 164
                 45668999**********44..7779***************87366789**************************************...566667777 PP

         SBF 131 vksvlivviiPliaGillryillkhkGrewfeskllpavspisligllltivvifal 187
                  + +++ +++P+++G l+r ++        +  k ++ +       +ll+++ +f+ 
  CTQ29241.1 165 -GKIMLQLLLPFVLGHLSRPWIGD------WVAKHKKWIGKTDQTSILLVVYSAFSE 214
                 .66788899*************99......666777777777777777777777765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.5
         SBF 134 vlivviiPli 143
                 +l + ++Pl+
  CTQ29241.1 288 ILGIMVLPLM 297
                 3333333332 PP

>> DUF4083  Domain of unknown function (DUF4083)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.2   0.00025       1.5       2      26 ..     226     250 ..     225     260 .. 0.87
   2 ?   -2.0   0.1      0.61   3.6e+03      12      27 ..     292     307 ..     282     321 .. 0.52

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00025
     DUF4083   2 lgdliyliivivLilllvfsftlfi 26 
                 lg l++ ++v +++l++v+++  f+
  CTQ29241.1 226 LGSLLFIVVVSLVLLAIVIAVNVFV 250
                 899******************8776 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.61
     DUF4083  12 ivLilllvfsftlfiR 27 
                 +vL l ++  + l++ 
  CTQ29241.1 292 MVLPLMIFHQIQLMVC 307
                 2333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1059  (0.0590663); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 2776.05
//
Query:       CTQ29242.1  [L=72]
Description: hypothetical protein CH1034_260011 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-28   98.6   0.1    1.5e-28   98.5   0.1    1.0  1  QSregVF_b  Putative quorum-sensing-regulated virulence factor


Domain annotation for each model (and alignments):
>> QSregVF_b  Putative quorum-sensing-regulated virulence factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.1   8.3e-33   1.5e-28       1      66 []       2      68 ..       2      68 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 8.3e-33
   QSregVF_b  1 dkelleelvktkmPFGkYkgrllidlPeeYlvWfarkG.FPkgkLGellalvleiklngLesllkpl 66
                dk +l e+++t+mPFGkYkgr lid+PeeYl+Wfark  FP+g+LGel+al+l ik++gL++l++pl
  CTQ29242.1  2 DKAQLVEIANTEMPFGKYKGRRLIDVPEEYLLWFARKDqFPAGHLGELMALTLLIKTEGLSDLVQPL 68
                5789*********************************88**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       172  (0.0095934); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 630.05
//
Query:       CTQ29243.1  [L=671]
Description: DNA ligase, NAD(+)-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.9e-142  471.8   0.0   1.4e-141  471.2   0.0    1.3  1  DNA_ligase_aden  NAD-dependent DNA ligase adenylation domain
    8.6e-36  121.7   1.5    2.3e-35  120.3   1.5    1.8  1  DNA_ligase_OB    NAD-dependent DNA ligase OB-fold domain
    4.8e-25   87.4   0.2    3.6e-22   78.2   0.3    3.1  2  HHH_2            Helix-hairpin-helix motif
      1e-14   54.9   0.2    6.5e-06   26.7   0.1    2.7  2  HHH_5            Helix-hairpin-helix domain
      2e-13   50.5   0.0    4.7e-13   49.3   0.0    1.6  1  BRCT             BRCA1 C Terminus (BRCT) domain
    1.8e-10   40.6   4.7    5.3e-10   39.1   4.7    1.9  1  DNA_ligase_ZBD   NAD-dependent DNA ligase C4 zinc finger doma
    6.9e-06   25.9   0.0    1.6e-05   24.8   0.0    1.6  1  PTCB-BRCT        twin BRCT domain
      8e-05   22.3   0.1    0.00061   19.5   0.0    2.6  3  HHH              Helix-hairpin-helix motif
  ------ inclusion threshold ------
      0.058   14.0   0.1       0.75   10.4   0.0    2.5  2  5_3_exonuc       5'-3' exonuclease, C-terminal SAM fold
       0.15   12.3   0.0         30    5.0   0.0    3.3  3  HHH_3            Helix-hairpin-helix motif
       0.19   12.0   0.0       0.41   10.9   0.0    1.6  1  DUF1799          Phage related hypothetical protein (DUF1799)


Domain annotation for each model (and alignments):
>> DNA_ligase_aden  NAD-dependent DNA ligase adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  471.2   0.0  8.8e-145  1.4e-141       3     318 .]       4     318 ..       2     318 .. 0.99

  Alignments for each domain:
  == domain 1  score: 471.2 bits;  conditional E-value: 8.8e-145
                      HHHHHHHHHHHHHHHHHHHHCTT-SSC-HCHHHHHHHHHHHHHHHSGGG--TTSCCG-SSSS--CTS-EEE-SS-----EEE-SHHHHHHHHHH CS
  DNA_ligase_aden   3 akkeleelrellrkydyeYyvldePlvsDaeyDrllkelkelEekfPelitpdSPtqrvgaeleaefkkveHeapllSLdnafdedelkafler 96 
                      ++++l+elr++lr+++y Y+v+d+P+v+DaeyDrl+++l+elE+++PelitpdSPtqrvga+++++f++++He+p+lSLdn+fde+++ af++r
       CTQ29243.1   4 IEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKR 97 
                      689******************************************************************************************* PP

                      HHHHSSS--S-EEEEEEEESSEEEEEEEETTEEEEEEE-TTSSEEEB-HHHHCT-TTS-SB-SSSS--SEEEEEEEEE--HHHHHHHHHHHHHC CS
  DNA_ligase_aden  97 ieealgnkekvayvvelKiDGlavsllYengvlvraatRGdGttGedvtaNvktiksiPlklkvdnlpeelevRGEvylrkedFeklNeerlee 190
                      ++++l+++ +++y++elK+DGlavs+lYengvlv+aatRGdGttGed+t+Nv+ti++iPlkl+ +n+p++levRGEv+l+++ Fek+Nee++++
       CTQ29243.1  98 VQDRLKSTDHLTYCCELKLDGLAVSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEEARRT 191
                      ********************************************************************************************** PP

                      T----SSHHHHHHHHHT-SSHHHHHTS--EEEEEEEEEEESS---.SBHHHHHHHHHHCT--B-TT-EEECSHHHHHHHHHHHHHHGGGSSS-E CS
  DNA_ligase_aden 191 geklfaNpRNaAaGslRqldpkitakrkLkliayglglvekeelevktqsealkvlkklglkvseelklvksieevleyieelekkRdeleyei 284
                      g k+faNpRNaAaGslRqldp+itakr+L++++yg+g++e+ el+ +++s++l ++k +gl+vs++++l+++ eevl+y++++e++R +l ++i
       CTQ29243.1 192 GGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELP-ASHSARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDI 284
                      *****************************************8888.9*********************************************** PP

                      EEEEEEESBHHHHHHH-EETSCESSEEEEE---C CS
  DNA_ligase_aden 285 DGvVvkvdelalqeeLGftakaPrwAiAyKfpae 318
                      DGvV+kvd+lalqe+LGf+a+aPrwA+A+Kfpa+
       CTQ29243.1 285 DGVVIKVDSLALQEQLGFVARAPRWAVAFKFPAQ 318
                      ********************************96 PP

>> DNA_ligase_OB  NAD-dependent DNA ligase OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   1.5   1.4e-38   2.3e-35       2      78 ..     322     398 ..     321     399 .. 0.97

  Alignments for each domain:
  == domain 1  score: 120.3 bits;  conditional E-value: 1.4e-38
                    --XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  DNA_ligase_OB   2 tkledievqVGRtGaltpvAeLepvelaGttVsratLhnedeierkdirigdtVvvekaGdvIPevvgvvlekreee 78 
                    t ++d+e+qVGRtGa+tpvA+Lepv++aG+ Vs+atLhn+deier++++igd+Vv+++aGdvIP+vv+vvl++r+++
     CTQ29243.1 322 TFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLKIGDKVVIRRAGDVIPQVVNVVLSERPAD 398
                    789***********************************************************************976 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.011        19      33      60 ..     478     505 ..     467     508 .. 0.86
   2 !   78.2   0.3   2.2e-25   3.6e-22       1      64 []     510     573 ..     510     573 .. 0.99

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.011
       HHH_2  33 sleeLlevddiGeeiAqsivefFenekn 60 
                 ++ +L+ +d  G++ Aq++v+ +e+ k 
  CTQ29243.1 478 TAGKLTGLDRMGPKSAQNVVNALEKAKE 505
                 6678999***************998775 PP

  == domain 2  score: 78.2 bits;  conditional E-value: 2.2e-25
       HHH_2   1 rllfaLGIrhVGektAklLakrFksldaLkkasleeLlevddiGeeiAqsivefFeneknreli 64 
                 r+l+aLGIr+VGe+tA  La +F++l+aL++a++eeL++v+d+G ++A+   +fF++e+nr++i
  CTQ29243.1 510 RFLYALGIREVGEATAAGLAAHFGTLEALEQATIEELQKVPDVGIVVATHTFNFFAEESNRDVI 573
                 79***********************************************************998 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   9.3e-09   1.5e-05       2      57 .]     446     502 ..     445     502 .. 0.94
   2 !   26.7   0.1     4e-09   6.5e-06       1      44 [.     511     553 ..     511     557 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 9.3e-09
                 HHHHTSTT--HHHHHHHHTTT.--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHHHH CS
       HHH_5   2 eeLlsvsGiGpktAlallsaG.iesvedlaaadveeLakipGiGkktAeriilelkd 57 
                 +  l+v+G+G k++  l+++  + +++dl ++++ +L+ +  +G+k A++++ +l++
  CTQ29243.1 446 RRALDVDGMGDKIIDQLVEKEyVHTPADLFRLTAGKLTGLDRMGPKSAQNVVNALEK 502
                 56799***************7699****************************99975 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 4e-09
                 -HHHHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS- CS
       HHH_5   1 feeLlsvsGiGpktAlallsaGiesvedlaaadveeLakipGiG 44 
                 f + l++  +G++tA  l+ + ++++e+l +a++eeL+k+p++G
  CTQ29243.1 511 FLYALGIREVGEATAAGLAAH-FGTLEALEQATIEELQKVPDVG 553
                 677899***************.*********************9 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   2.9e-16   4.7e-13       4      78 ..     596     668 ..     594     669 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 2.9e-16
                 TTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHH CS
        BRCT   4 llfhgckfvitgvldnftrdeleelikehGGkvttevskktthlvvgepesrslkylealklnipivheewlldc 78 
                  +f g+++v+tg+l++  rd+++  + e+G+kv ++vskkt+++++ge    ++k+ +a++l+i++++e +++ +
  CTQ29243.1 596 SPFAGKTVVLTGSLSQLSRDDAKARLVELGAKVAGSVSKKTDLVIAGEA--AGSKLAKAQELGIEVIDEAEMMRL 668
                 69***********************************************..88****************999876 PP

>> DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   4.7   3.2e-13   5.3e-10       1      27 []     407     434 ..     407     434 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 3.2e-13
  DNA_ligase_ZBD   1 hCPvCGsavvReegeaiyRCtn.lsCpA 27 
                     hCPvC s v+R egea++RCt+ l+C A
      CTQ29243.1 407 HCPVCQSDVERVEGEAVARCTGgLICGA 434
                     9********************77***77 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   9.6e-09   1.6e-05       8      59 ..     609     660 ..     602     662 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 9.6e-09
                 B-TTCHHHHHHHHHHTT-EEESSEETT-SEEEECSS-CHHHHHHHHCT-EEE CS
   PTCB-BRCT   8 ysgddrkslqklieamGaeyskdltksvTHLicksgeGekyekAkkwgipvV 59 
                 +s+ +r++++  ++++Ga++ + ++k++  +i+ ++ G+k  kA++ gi+v+
  CTQ29243.1 609 LSQLSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI 660
                 45556*********************************************97 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.3   5.4e+03      20      27 ..     489     496 ..     488     498 .. 0.83
   2 ?   -2.9   0.1       4.9     8e+03      19      24 ..     520     525 ..     517     526 .. 0.85
   3 !   19.5   0.0   3.7e-07   0.00061       1      25 [.     534     558 ..     534     563 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.3
                 SHHHHHHH CS
         HHH  20 GpktAeaI 27 
                 Gpk A+ +
  CTQ29243.1 489 GPKSAQNV 496
                 9****987 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.9
                 -SHHHH CS
         HHH  19 VGpktA 24 
                 VG++tA
  CTQ29243.1 520 VGEATA 525
                 9****9 PP

  == domain 3  score: 19.5 bits;  conditional E-value: 3.7e-07
                 SHHHHHTSSHHHHHTSTT-SHHHHH CS
         HHH   1 sleglipasreeLlalPGVGpktAe 25 
                 +le+l  a++eeL+++P VG  +A 
  CTQ29243.1 534 TLEALEQATIEELQKVPDVGIVVAT 558
                 589999**************99986 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.68   1.1e+03      19      40 ..     481     502 ..     478     507 .. 0.82
   2 ?   10.4   0.0   0.00046      0.75      22      48 ..     516     542 ..     514     573 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.68
  5_3_exonuc  19 nipGvpgiGektAakLlkeygs 40 
                 ++ G   +G+k A+++++  ++
  CTQ29243.1 481 KLTGLDRMGPKSAQNVVNALEK 502
                 578999*********9998765 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00046
  5_3_exonuc  22 GvpgiGektAakLlkeygsleeilenl 48 
                 G++ +Ge tAa L +++g+le++ +++
  CTQ29243.1 516 GIREVGEATAAGLAAHFGTLEALEQAT 542
                 99********************98754 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.13   2.2e+02      35      60 ..     438     462 ..     434     465 .. 0.80
   2 ?    0.3   0.0      0.51   8.3e+02      14      33 ..     480     499 ..     475     511 .. 0.82
   3 ?    5.0   0.0     0.019        30      10      28 ..     540     558 ..     537     563 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.13
       HHH_3  35 eknGpfksreeLlkvkglgpktfeql 60 
                 e+ ++f sr  L +v g+g+k ++ql
  CTQ29243.1 438 ESLKHFVSRRAL-DVDGMGDKIIDQL 462
                 455789999987.8**********98 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.51
       HHH_3  14 eeLqklpGlgpklAknIvay 33 
                   L+ l  +gpk A+n+v++
  CTQ29243.1 480 GKLTGLDRMGPKSAQNVVNA 499
                 567788889********986 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.019
       HHH_3  10 tAsaeeLqklpGlgpklAk 28 
                 +A+ eeLqk+p +g ++A 
  CTQ29243.1 540 QATIEELQKVPDVGIVVAT 558
                 79***********999985 PP

>> DUF1799  Phage related hypothetical protein (DUF1799)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00025      0.41      46      75 ..      19      48 ..      13      53 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00025
     DUF1799 46 ealfavldrlgldkeekddlfdqlqvlese 75
                e l++v+d   ++++e+d+l+++l+ les+
  CTQ29243.1 19 EYLYHVMDAPEVPDAEYDRLMRKLRELESQ 48
                569*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      623  (0.0347482); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.37
# Mc/sec: 5468.97
//
Query:       CTQ29244.1  [L=353]
Description: cell division protein involved in Z ring assembly [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-50  168.9   0.4    5.5e-50  168.5   0.4    1.1  1  ZipA_C    ZipA, C-terminal FtsZ-binding domain
  ------ inclusion threshold ------
       0.61   10.0  21.7       0.87    9.5  21.7    1.3  1  TFIIA     Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> ZipA_C  ZipA, C-terminal FtsZ-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.5   0.4   6.2e-54   5.5e-50       2     128 .]     218     344 ..     217     344 .. 0.99

  Alignments for each domain:
  == domain 1  score: 168.5 bits;  conditional E-value: 6.2e-54
      ZipA_C   2 vivlnvvakegeafsGtkllqaleaaglklgemgiFhrhededgkgpvlFslanmvkpGtFdlenmeefstpGvslflqlpsvgdaleafdqmletArq 100
                 viv+nv+a++g +++G+ l +++++ag+k+gem+iFhrh ++dg+gpvlFslanmvkpGtF++++m++++tpGv++f+q+ps+gd+l++f+ ml+ A+ 
  CTQ29244.1 218 VIVMNVAAHHGAQLNGEVLINSIQQAGFKFGEMNIFHRHLSPDGSGPVLFSLANMVKPGTFNPDSMADMMTPGVTIFMQVPSYGDELQNFKLMLQSAQY 316
                 89************************************************************************************************* PP

      ZipA_C 101 laeeLggellDenrsplteqtiekirqr 128
                 +a+e+gg++lD++r+++t+q+++++++r
  CTQ29244.1 317 IADEVGGVVLDDQRRMMTPQKLREYQDR 344
                 ************************9875 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  21.7   9.7e-05      0.87     119     256 ..      65     218 ..      31     277 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 9.7e-05
       TFIIA 119 pakleppvqipagvtlqtasg.qlykvnv.....qasgaqqiaaqplqqvvqq.sqgsaaqssvaalqaqsqqaqalaepqqq.lekq.qqq.qqqqqq 207
                 ++ ++p+ + p g   +   + q+ + +       + ++ ++ ++p+ q  q  +q+++  ++ +a++a++q   ++++p q   ++q q q + qq++
  CTQ29244.1  65 EVRVHPVTHAPHGAHGEHEAPrQAPQHQYqppyeRQMQQPARPEEPVRQPPQPpRQAPVPPQQQPAPHAAPQTGWQQPQPAQPpVQPQhQPQpVVQQPV 163
                 556667777777666665555433333332222222223333334444443334555554444444444433333333333333222222222444444 PP

       TFIIA 208 qqqqq..qvqqqqqe.esqqaqqasqe......qvag.sqvessqtdgaedaleeespv 256
                 + q+   +v q q + ++q a+q          +va+ + ve++q   ++  +e +++v
  CTQ29244.1 164 APQPVtpTVAQPQPAaPQQPAPQ---PvaasqpAVAEpQPVEPQQPAAPQ-PKERKETV 218
                 44443222222222122222222...222222333321333333333333.22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 2377.61
//
Query:       CTQ29245.1  [L=253]
Description: putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-41  142.0  21.1    2.7e-41  141.8  21.1    1.0  1  EI24      Etoposide-induced protein 2.4 (EI24)


Domain annotation for each model (and alignments):
>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8  21.1   1.5e-45   2.7e-41       1     178 []      15     231 ..      15     231 .. 0.94

  Alignments for each domain:
  == domain 1  score: 141.8 bits;  conditional E-value: 1.5e-45
                 HHHHHHHHHTS.TTTHHHHHHHHHHHHHHHHHHHHHHH................-.....TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EI24   1 allrglglllsspkllallllplllnlllfllllvlll................w.....vllasllvllllllplwlfplvalllaapfygllaekve 78 
                 ++ +g++l+   p+++++++lpll+n+ll+++++++l+                w     +ll++++vl++ll++ ++f+++a+++aapf gllae++e
  CTQ29245.1  15 YFSQGWKLIGL-PGIRRYVFLPLLVNVLLMGAAFWWLFtrlgswipslmshvpdWlqwlnYLLWPVVVLSILLVFGYFFSTIANWIAAPFSGLLAEQLE 112
                 689999*9999.*********************999999****888877777773666***************************************** PP

                 H.HH..........CCTTSHH....HHHHHHHHHHHHHHHHHHH.HHTTHHH....HHHHHHHHHHHHHHHHHHHHHH...-HHHHHHHHHCTHHHHHH CS
        EI24  79 krhl..........glvksla....eslkslllllllllvllpl.liPvvglilsplllswltayfycfeyldlaagr...sleerrallerrrayflg 159
                 +r            g++k+++    +++++l+ +l++++vll+l +iP+vg++++p+l+++++a++++++y+d+++++   +++ +r+ l++r+   + 
  CTQ29245.1 113 ARLTgatppdvgvfGIMKDIPrimkREWQKLAWYLPRAIVLLLLyFIPGVGQTVAPVLWFLFSAWMLAIQYCDYPFDNhkvPFKTMREALRSRKVMNMQ 211
                 976477888888999*****************************999**************************************************** PP

                 HHHHHHHHTTSCCHHCTH.H CS
        EI24 160 fGllvslllliPllnllf.P 178
                 fG+l+sl+++iP+lnl++ P
  CTQ29245.1 212 FGALTSLFTMIPVLNLVIlP 231
                 ****************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1919.73
//
Query:       CTQ29246.1  [L=323]
Description: cysteine synthase A, O-acetylserine sulfhydrolase A subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.6e-69  232.2   0.2    9.8e-69  232.0   0.2    1.0  1  PALP        Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
      0.019   14.9   0.7       0.23   11.5   0.4    2.5  2  ADH_zinc_N  Zinc-binding dehydrogenase
      0.029   14.2   0.1      0.056   13.3   0.1    1.4  1  DFP         DNA / pantothenate metabolism flavoprotein


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.0   0.2   1.6e-72   9.8e-69       3     293 ..      10     300 ..       8     301 .. 0.94

  Alignments for each domain:
  == domain 1  score: 232.0 bits;  conditional E-value: 1.6e-72
                 GCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHH CS
        PALP   3 lgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallr 98 
                 l ig TPlvrl+r+    ++++++K Es np+ S+K R  +++++++++    +++  +ve +sGN+g+alA++aa+ G+k+t+ +p+++s e+++ll+
  CTQ29246.1  10 LTIGHTPLVRLNRIG---NGRILAKVESRNPSFSVKCRIGANMIWDAEKRgvlKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLK 105
                 689**********98...778*************************77777************************************************ PP

                 HTT-EEEEECCH..HHHHHHHHHHHHHH.STTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT..-EEEEEE CS
        PALP  99 llGaevvevggd..ydeavaaaaelaae.gegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpd..vrvigve 191
                 +lGa++v+++g    + a ++a+e+ a+  e ++l++qf+np++ e   +t+g+Ei+e+++g++d+++ +vG+Gg+++G+++++k  +++     ++ve
  CTQ29246.1 106 ALGANLVLTEGAkgMKGAIQKAEEIVASnPEQFLLLQQFSNPANPEIhEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVSRYIKNTKGKkdLITVAVE 204
                 *********55544999999999998887999******************************************************555545888899* PP

                 ECTTCGGTTCCS..S.SS..B.SSS.CCSTCS.CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCTTCEEE CS
        PALP 192 pegsdalarslragrrvtvpvsdtiadglavg.spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelkegdrv 288
                 p+ s+ +a++l ag  ++++++++ ++g+++g  p++l+++l+d+ ++    +++eea++++r+l ++egi+++ ss+aa+aa+ kl+e++++ ++ ++
  CTQ29246.1 205 PTDSPVIAQAL-AG--EELKPGPHKIQGIGAGfIPGNLDLKLVDKVIG----ITNEEAISTARRLMEEEGILAGISSGAAVAAAlKLQEDEAFTNK-NI 295
                 ***********.55..5577889*******************999888....********************************************.99 PP

                 EEEE- CS
        PALP 289 vvilt 293
                 vvil+
  CTQ29246.1 296 VVILP 300
                 99986 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   3.8e-05      0.23       3      76 ..      74     186 ..      73     214 .. 0.62
   2 ?   -1.5   0.0      0.38   2.3e+03      59      90 ..     244     274 ..     240     303 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHTT-EEEE...EESSHHHHHHHHHTTESEEEET.............................TTCHHHHHHHHHT............... CS
  ADH_zinc_N   3 GlaavqlAkalGaevia...vdsseeklelakklGadeviny.............................keadlverikelt............... 54 
                 G+a+  +A+a G + +       s e+++l+k lGa+ v+++                             +                           
  CTQ29246.1  74 GIALAYVAAARGYKLTLtmpETMSIERRKLLKALGANLVLTEgakgmkgaiqkaeeivasnpeqflllqqfS-----------Npanpeihekttgpei 161
                 6666666777777444400345566799**************665554444444444444444444444440...........0444444444444444 PP

                 ...TTSSEEEEEESSCSHHHHHHHH CS
  ADH_zinc_N  55 ...ggegvdvvfecvGsgatleaal 76 
                     +++vdv +  vG+g tl+   
  CTQ29246.1 162 wedTDGQVDVFISGVGTGGTLTGVS 186
                 4432558888888888887776555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.38
                 EEEEEESSCSHHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N  59 vdvvfecvGsgatleaalkllkpgGrlvvvGg 90 
                 vd v+  ++ ++++++a +l+ + G l+ +  
  CTQ29246.1 244 VDKVIGITN-EEAISTARRLMEEEGILAGISS 274
                 666666666.7777777777777776665543 PP

>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   9.3e-06     0.056      26      79 ..      68     127 ..      65     133 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.3e-06
                 ----HHHHHHHHHHHHTT-EEEEEE-S-.SS--.....-TT-EEEE--SHHHHHHHHHHH CS
         DFP  26 rSSGkmGyalAeaaaarGaeVtlvsgpv.slet.....pegvevvkvesaeemleaveea 79 
                 + SG +G+alA  aaarG + tl   ++ s+e        g+++v  e a+ m+ a+++a
  CTQ29246.1  68 PTSGNTGIALAYVAAARGYKLTLTMPETmSIERrkllkALGANLVLTEGAKGMKGAIQKA 127
                 57*********************9988547665334323377888899999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2569.16
//
Query:       CTQ29247.1  [L=85]
Description: phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-28   98.3   0.2    2.4e-28   98.2   0.2    1.0  1  PTS-HPr   PTS HPr component phosphorylation site
  ------ inclusion threshold ------
      0.013   15.9   0.0      0.017   15.5   0.0    1.3  1  MG1       Macroglobulin domain MG1


Domain annotation for each model (and alignments):
>> PTS-HPr  PTS HPr component phosphorylation site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.2   2.7e-32   2.4e-28       2      81 ..       3      82 ..       2      83 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 2.7e-32
                EEEEEEESTCCCSHHHHHHHHHHHTTSSSEEEEEE....EETTSHHHHHHCTCSTT-EEEEEEESTTHHHHHHHHHHHHC CS
     PTS-HPr  2 ekkvtiknekGlhaRpAamlvqaasefksevtlekkdkpvnaksilglmsLgvkkGeevtvsaeGedeeealealaelle 81
                +++vti+ ++Glh+RpAa++v++a+ f+se+t+++++k+++aks+++l +Lg+ +G+ vt+saeGede++a+e+l++l++
  CTQ29247.1  3 QQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTLSAEGEDEQKAVEHLVKLMA 82
                789*******************************988****************************************986 PP

>> MG1  Macroglobulin domain MG1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   1.9e-06     0.017       2      58 ..       4      59 ..       3      84 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.9e-06
                -EEEEEEESSEETTSEEEEEEEEES-SS-EEEEEEEEETTTTTSEEEEEEEEESTTT CS
         MG1  2 plylltaPnvlrvgseetivveahgltkeveVtitvkdfpqkkkelasesvtLnsdn 58
                +  ++taPn l++    + v ea+g+t+e++Vt + k+ + k+ ++  +++ L++++
  CTQ29247.1  4 QEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKS-LFKLQTLGLTQGT 59
                5689*****************************9999999887.7777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 717.69
//
Query:       CTQ29248.1  [L=575]
Description: PEP-protein phosphotransferase of PTS system (enzyme I) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-126  421.7   0.2   1.7e-126  421.3   0.2    1.2  1  PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
    3.3e-29  101.4   4.2    3.3e-29  101.4   4.2    2.5  3  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
    2.3e-23   81.7   0.2    8.6e-23   79.9   0.2    2.1  1  PEP-utilizers    PEP-utilising enzyme, mobile domain
    0.00011   21.5   0.5    0.00032   19.9   0.1    1.9  2  HpcH_HpaI        HpcH/HpaI aldolase/citrate lyase family
  ------ inclusion threshold ------
      0.024   14.3   0.1      0.044   13.4   0.1    1.3  1  CHASE7           Periplasmic sensor domain


Domain annotation for each model (and alignments):
>> PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.3   0.2  4.8e-130  1.7e-126       1     293 [.     250     541 ..     250     542 .. 0.99

  Alignments for each domain:
  == domain 1  score: 421.3 bits;  conditional E-value: 4.8e-130
                      CHHSTSCCCCCCCHCCCXBCEEEEEESSCHHHHHHHHCTXSSEEEEEHHHHCTTSCCHHHHHHHHHHHHHHHHHTTTSEEEEEXXXSSCCGGSG CS
  PEP-utilizers_C   1 kaesgklktllavtkdgkkikvlaNidtpedaekalengaeGiGLlRtEflfmareelpteeeqaeaykkvleamngrpvvvRtlDiggdkelp 94 
                      kae++klk+l+a+t dg++++v+aNi+t++d+e a++ngaeG+GL+RtEflfm+r++lpteeeq++ayk+v+ea+ +++v+vRt+Diggdkelp
       CTQ29248.1 250 KAELAKLKDLPAITLDGHQVEVCANIGTVRDVEGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELP 343
                      57899***************************************************************************************** PP

                      GCHHHH.XSXGGGSSXTHHHHCCSHHHHHHHHHHHHHHCCCCEEEEEESSXXSHHHHHHHHHHHHHHHHHHHHCTCTXXTTXEEEEEEXSHHHH CS
  PEP-utilizers_C  95 elkeepeevNPmlGfRgirlglsepelfetqlrAllrasaagkleimlPmvasveeleeakkiieevkeelekegvkkkkkvkvGiMiEvpsaa 188
                      ++ ++p+e+NP+lG+R++r++++++e+++ q+rA+lrasa+gkl+im+Pm+ svee++  kk ie +k+el++eg ++++++++G+M+E+p+aa
       CTQ29248.1 344 YM-NFPKEENPFLGWRAVRIAMDRKEILRDQVRAILRASAFGKLRIMFPMIISVEEVRALKKEIEIYKQELRDEGKAFDESIEIGVMVETPAAA 436
                      **.******************************************************************************************* PP

                      HTHHHHCTTSSEEEEXHHHHHHHHHTXXCCCHCHHHHSXTTTCHHCCCHHHHHHHHHHCCXEEEEESCCCCSCCCHHHHHHCTXSEEEEXGGGH CS
  PEP-utilizers_C 189 lladklakevdFfSiGtNDLtQytlavdRdneevaklydplepavlrlikevikaaeekglkvgiCGelagdpsavellvglGldelSmsaasv 282
                      ++a++lakevdFfSiGtNDLtQytlavdR n+++++ly+p++p+vl+lik+vi+a++++g+++g+CGelagd++a+ ll+g+Glde+Smsa s+
       CTQ29248.1 437 TIARHLAKEVDFFSIGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSAISI 530
                      ********************************************************************************************** PP

                      HHHHHHHHCTT CS
  PEP-utilizers_C 283 paaraalaqve 293
                      p++++ +++++
       CTQ29248.1 531 PRIKKIIRNTN 541
                      *******9875 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   4.2   9.2e-33   3.3e-29       2     116 .]       4     126 ..       3     126 .. 0.98
   2 ?   -2.7   0.0       1.8   6.6e+03      35      46 ..     241     252 ..     224     266 .. 0.52
   3 ?   -3.2   0.3       2.5   9.1e+03      85     109 ..     311     335 ..     310     335 .. 0.77

  Alignments for each domain:
  == domain 1  score: 101.4 bits;  conditional E-value: 9.2e-33
                      -EEEE-SEEEEEEE.....---.-----G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH...T-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHT CS
  PEP-utilisers_N   2 GiaaspGiaiGkav.....eveveeeeveaedveaelerleeAlekvreelealaeka...lgeeeaaifeahlmlleDpelleeveerIregg 87 
                      Gi aspGia+Gka+     e+ +++++++a++v++e+er+ + ++k+ ++le ++ ka    gee++aife h+mlleD+el +e+ ++I++++
       CTQ29248.1   4 GILASPGIAFGKALllkedEIVIDRKKISADKVDQEVERFLSGRAKASAQLEVIKTKAgetFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKH 97 
                      9*****************988899*********************************9**99999***************************** PP

                      --HHHHHHHHHHHHHHHHHHTT-HHHHHH CS
  PEP-utilisers_N  88 lnaeaAveevveefaaqfealddeylreR 116
                      ++a aA +ev++  a+++e+lddeyl+eR
       CTQ29248.1  98 MTADAAANEVIDGQATALEELDDEYLKER 126
                      ****************************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.8
                      HHHHHHHHHHHH CS
  PEP-utilisers_N  35 rleeAlekvree 46 
                       l++ +++ ++e
       CTQ29248.1 241 SLQAQVAEEKAE 252
                      222222222222 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.5
                      HHT--HHHHHHHHHHHHHHHHHHTT CS
  PEP-utilisers_N  85 egglnaeaAveevveefaaqfeald 109
                      e++  a +Av+e++ + a   + +d
       CTQ29248.1 311 EEQFAAYKAVAEACGSQAVIVRTMD 335
                      5677888999999998888877775 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.2   2.4e-26   8.6e-23       2      70 ..     152     222 ..     151     224 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 2.4e-26
                    --S-EEEEES---HHHHTTS-..GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.HH--TEEEEEET CS
  PEP-utilizers   2 leegvILvaeetspsdiagld..kaaGivterGGmtSHaAivArelgiPaVvgvgeatielkegdlitvDg 70 
                    ++++vILva +++ps++a+l+  k+ G++t+ GG+tSH++i+Ar+l++Pa+vg+g++t ++k+gd++++D+
     CTQ29248.1 152 IQDEVILVAADLTPSETAQLNlkKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSITAQVKNGDYLILDA 222
                    6788******************************************************999999******8 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.49   1.7e+03     171     218 ..     222     269 ..     210     270 .. 0.82
   2 !   19.9   0.1     9e-08   0.00032      63     155 ..     359     457 ..     357     496 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.49
                 HHHHHHHHTTHCEEEEEEE.E-SSHHHHHHHHHTTHCEEEEEEHHHHH CS
   HpcH_HpaI 171 dareriltaaraagiaaldtvasdiddaegflaegalfvalGfdgkll 218
                 ++ +++l+   +++i+al ++ +++ ++++ la+ +   a+  dg+++
  CTQ29248.1 222 AVNNQVLINPSNEQIEALRSLQAQVAEEKAELAKLKDLPAITLDGHQV 269
                 567788888999999999999999999999999999999999998876 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 9e-08
                 EEE-SSTTHHHHHHHGG.HHHTTS...SEEEESS--SHHHHHHHHHHTSHTTTS---....HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHH CS
   HpcH_HpaI  63 vVRvnsldselikqdle.vldlga...qvvlvPkvetaeealevvsalrepekgirg....anketrllaqiEsaegvknaeeIaavegldgvflGaeD 153
                  VR+    +e+++++++ +l+++a     +++P++ + ee++++++ ++  +++ r      ++++ + + +E+ ++ + a+  a  +++d   +G++D
  CTQ29248.1 359 AVRIAMDRKEILRDQVRaILRASAfgkLRIMFPMIISVEEVRALKKEIEIYKQELRDegkaFDESIEIGVMVETPAAATIARHLA--KEVDFFSIGTND 455
                 59999999999999999966665511167**************************9988878899***********998888876..789999****** PP

                 HH CS
   HpcH_HpaI 154 ls 155
                 l+
  CTQ29248.1 456 LT 457
                 97 PP

>> CHASE7  Periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.2e-05     0.044      53     122 ..      31     100 ..      25     112 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
      CHASE7  53 ldldalraavqqfeerRdkpaWqlelnrrralpvfGvsdafvarstllsrddaklaneltaalelsylls 122
                  + d++++ v++f + R k   qle+ + +a + fG   + + + ++++ +d++l++e+ a ++  ++  
  CTQ29248.1  31 ISADKVDQEVERFLSGRAKASAQLEVIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTA 100
                 5679999******************************************************998888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4214.93
//
Query:       CTQ29249.1  [L=169]
Description: glucose-specific enzyme IIA component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-49  166.9   1.3    1.9e-49  166.6   1.3    1.1  1  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
  ------ inclusion threshold ------
      0.034   14.0   0.1       0.57   10.0   0.0    2.6  3  Biotin_lipoyl_2  Biotin-lipoyl like
      0.067   13.1   0.4        2.5    8.1   0.1    2.9  3  RnfC_N           RnfC Barrel sandwich hybrid domain


Domain annotation for each model (and alignments):
>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.6   1.3   3.3e-53   1.9e-49       2     126 ..      22     146 ..      21     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: 166.6 bits;  conditional E-value: 3.3e-53
                 S-----SEEEEEGGGSSSHHHHT-TTSEEEEEEE-SSEEEES--EEEEE--SSSSEEEEESSSS-EEEEE-SSSTTTTTTTTEEES----SEE-SEEEE CS
  PTS_EIIA_1   2 eilspvsGevvpleevpDevfaekmlGdGvaiepsegkvvapvdGkvekvfptkHaigiktddgvevlihiGidtvklkgegFellvkegdkVkagdkl 100
                 ei++p+sGe+v++e+vpD vfaek++GdG+ai+p+ +k+vapvdG++ k+f+t+Ha+ i++d+g+e+ +h+Gidtv+lkgegF+ +++eg++Vk gd++
  CTQ29249.1  22 EIVAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGIELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDPV 120
                 89************************************************************************************************* PP

                 EEE-HHHHGGGSS---EEEEESSGGG CS
  PTS_EIIA_1 101 vevdleaikkagystttpvvvtnsee 126
                 +e+dl  ++++++st tpvv++n++e
  CTQ29249.1 121 IEFDLPLLEEKAKSTLTPVVISNMDE 146
                 ***********************986 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.11   6.5e+02       3      16 ..      21      34 ..      19      35 .. 0.83
   2 ?   -1.5   0.0       0.4   2.4e+03       7      15 ..      62      70 ..      59      72 .. 0.79
   3 ?   10.0   0.0   9.6e-05      0.57      19      39 ..     109     129 ..     108     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.11
  Biotin_lipoyl_2  3 vsIaapvsGrVaql 16
                     ++I ap+sG ++ +
       CTQ29249.1 21 IEIVAPLSGEIVNI 34
                     67899****99976 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.4
  Biotin_lipoyl_2  7 apvsGrVaq 15
                     apv+G++ +
       CTQ29249.1 62 APVDGTIGK 70
                     89***9965 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 9.6e-05
  Biotin_lipoyl_2  19 kdGqrVkaGdvLaelDsralq 39 
                      ++GqrVk Gd  +e D + l+
       CTQ29249.1 109 EEGQRVKVGDPVIEFDLPLLE 129
                      69*********9999987777 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00042       2.5      66      87 ..      20      41 ..       9      58 .. 0.73
   2 ?    0.5   0.0     0.095   5.7e+02      68      84 ..      59      75 ..      39      85 .. 0.70
   3 ?    1.3   0.0     0.056   3.4e+02      39      60 ..     101     122 ..      96     149 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00042
      RnfC_N 66 sapvhasvsGtVkaiekrlvah 87
                + ++ a+ sG++++ie+++   
  CTQ29249.1 20 TIEIVAPLSGEIVNIEDVPDVV 41
                5789************987554 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.095
      RnfC_N 68 pvhasvsGtVkaiekrl 84
                +  a+v Gt+ +i + +
  CTQ29249.1 59 KMVAPVDGTIGKIFETN 75
                45677777777776555 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.056
      RnfC_N  39 GapakplvkvgdkVlkGqkiae 60 
                 G+  k + ++g++V+ G+ + e
  CTQ29249.1 101 GEGFKRIAEEGQRVKVGDPVIE 122
                 5666778899999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.26s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 1382.92
//
Query:       CTQ29250.1  [L=79]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 640.24
//
Query:       CTQ29251.1  [L=288]
Description: pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-22   79.6   0.0    2.8e-22   79.3   0.0    1.1  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
    9.9e-10   38.2   0.1    1.7e-09   37.4   0.1    1.4  1  PfkB          pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.0   3.1e-26   2.8e-22      61     233 ..      94     269 ..      42     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 3.1e-26
                   -SEEEE-S--SHHHHHHHHHHHHH.....TTSSEEEE---SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHH CS
  Phos_pyr_kin  61 vdavKiGmlasaeiievvaeklkk.....ykvpvVlDPVmvaksgselleeeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkll 152
                    +av +G ++sa  ie +a++l++      ++ + +DPV+   +    +++e  +a++++Llpla+ itPNl+E+e L+g+++++ +++ +aa++ll
    CTQ29251.1  94 LRAVTTGYMGSAVQIERLAQWLTRvrarhPGLCILVDPVIGDVDSGIYVKAEIPDAYRQHLLPLAQGITPNLFELETLSGQRCRDRQEAVAAARSLL 190
                   67999************999985422221334799************************************************************** PP

                   HTT-SEEEEEEGGS-SSSEEEEEEEE.TSSEEEEEEEE----S--BTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHH CS
  Phos_pyr_kin 153 klgakaVlikGghlegeeavvtdvly.dgeeveeleaerietknthGtGCtlssaiaaelakgesleeAvkkAkeyvteaik 233
                   + + k+V+i+    e   + +++vl+ + + ve + ++r+e ++ +GtG+ + + + + l  g  l  A + A + v e ++
    CTQ29251.1 191 SDTLKWVVITSAPGEA--DSTINVLVvTADAVEVVVHPRVE-TDLKGTGDLFCAELVSGLLSGLALGAATQAAAQRVLEVMN 269
                   ***********98644..4445999989*************.99*****************************998877765 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1   1.9e-13   1.7e-09     178     282 ..     152     260 ..     130     282 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1.9e-13
                 HHHHCTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE.....TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHT CS
        PfkB 178 lellaladllkpneeElealtgekledieealaalhklkakgaktvvvtlGkeGalvve.....kdgelkvpavpkvkvvDttGAGDsfvggflaalle 271
                 ++ll+la+ ++pn  Ele l+g+   d +ea+aa+  l++   k+vv+t     a         + + ++v   p +   D  G+GD f++ ++++ll+
  CTQ29251.1 152 QHLLPLAQGITPNLFELETLSGQRCRDRQEAVAAARSLLSDTLKWVVITSAPGEADSTInvlvvTADAVEVVVHP-RVETDLKGTGDLFCAELVSGLLS 249
                 6889*********************************************97655543332355544444444424.5568*********9999999999 PP

                 THHHHHHHHHH CS
        PfkB 272 gksleealrfa 282
                 g  l  a ++a
  CTQ29251.1 250 GLALGAATQAA 260
                 87777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2189.44
//
Query:       CTQ29252.1  [L=432]
Description: putative transcriptional regulatory protein PtsJ [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-28   98.1   0.0      7e-28   97.8   0.0    1.1  1  Aminotran_1_2    Aminotransferase class I and II
    1.9e-17   62.7   1.0    5.8e-17   61.1   0.1    2.4  2  GntR             Bacterial regulatory proteins, gntR family
    5.5e-06   25.9   0.0    8.9e-06   25.2   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
     0.0073   16.2   0.0      0.025   14.5   0.0    1.9  2  HTH_36           Helix-turn-helix domain
  ------ inclusion threshold ------
      0.079   12.9   0.0        0.4   10.7   0.0    2.3  2  HTH_Crp_2        Crp-like helix-turn-helix domain
       0.17   12.2   0.0        5.1    7.5   0.1    2.4  2  Rrf2             Transcriptional regulator
       0.18   11.5   0.0       0.34   10.6   0.0    1.5  1  HTH_41           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0   2.7e-31     7e-28      71     362 ..     144     424 ..     109     425 .. 0.87

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 2.7e-31
                    EEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B-- CS
  Aminotran_1_2  71 vvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvat 166
                    v + sGa  ++e l  +l l pgd ++v dp + s +n++r++g++  +++++     ++d ++leeal++       + vil+  +hNPtG  +t
     CTQ29252.1 144 VNLASGAIDALERLLCAL-LLPGDGVVVEDPCFLSSINMVRYAGFTPCPVAVD---AEGMDPDGLEEALRNG-----ARAVILTPRAHNPTGCSLT 230
                    557778877777777777.89******************************66...669***********94.....367**************** PP

                    HHHHHHHHHHHHHT.TEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH..HHHHHHHHHHHHHTSSHHHHHH CS
  Aminotran_1_2 167 leeleklldlakky.nlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgna..avvsqlrklsrpflsssllqaa 259
                    +   ++l ++  +y  +l +vD+ +a +  +   ++   + +++  + ++v+s+sK +G + +R+++i+++a    +  lr  + + ++s llq +
     CTQ29252.1 231 ETRAHALREVLARYpQVLAIVDDHFALLSAT---PWHSPLPASTQRW-ALVRSMSKTLG-PDLRLAFIASDAatSAALRLRLNAGSQWVSHLLQDL 321
                    **************************99999...4554666777777.***********.778*******9955566666667777788******* PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS...TTEEEEECTTS- CS
  Aminotran_1_2 260 vaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftv...pgrlRitvAglt 352
                    ++a l d+ +++ +++e+r+++ ++ ++l ++La+ g+++ ++  g+  +  l+a+  +  +  L+   g +v+ g+ f++   +  lR+++  l+
     CTQ29252.1 322 TLACLTDEAFIA-SMTETRRHYRQQNEKLAAALARHGFSHATPGDGLNFWLPLTAA-SQPYALRLARA-GWLVREGEVFGIhtpSHGLRLSLGRLS 414
                    *********986.********************999******************99.33333336666.9**********9997667********* PP

                    HHHHHHHHHH CS
  Aminotran_1_2 353 eeeleelvea 362
                    ++e+ +l+  
     CTQ29252.1 415 DAEISRLAAD 424
                    ****999875 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.1   2.3e-20   5.8e-17       2      64 .]       7      69 ..       6      69 .. 0.97
   2 ?   -1.9   0.1         1   2.7e+03      47      57 ..     383     393 ..     382     396 .. 0.85

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 2.3e-20
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                ++++ + +r+++ sg l+pG+ LP++reLa++++V+r+tv  A++rL++ gl++++ ++Gt +
  CTQ29252.1  7 ASEIFDNIRHLVQSGGLQPGEVLPPVRELASQLAVNRNTVAAAYKRLVTSGLAVSQGRNGTAI 69
                789**********************************************************76 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1
                 HHHHTTSEEEE CS
        GntR  47 rLeaeglverr 57 
                 rL+++g+++r+
  CTQ29252.1 383 RLARAGWLVRE 393
                 89******997 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   3.5e-09   8.9e-06      29     117 ..     131     217 ..     128     233 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 3.5e-09
                      HHHHHHHHT-SEEEEESSHH.HHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEEEE CS
  DegT_DnrJ_EryC1  29 EkafaaylgvkhaiavssGt.aAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitertkaIlp 117
                      E+ fa+ + v +a+ ++sG  +Al+ +L al +  gd V+v    F++++n+v+++g +p +v vd++   +dp+ +e+a+ +  +a+++
       CTQ29252.1 131 EAWFAREIAVPFAVNLASGAiDALERLLCALLLP-GDGVVVEDPCFLSSINMVRYAGFTPCPVAVDAE--GMDPDGLEEALRNGARAVIL 217
                      667999999*********9659999999999775.*******************************77..5899*******999999986 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   9.6e-06     0.025      22      54 ..      26      58 ..      24      59 .. 0.90
   2 ?   -2.7   0.1       2.3   5.8e+03      48      55 .]     383     390 ..     380     390 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.6e-06
      HTH_36 22 ggcfpsqetlakrlglsknTvsraikeLeqlGy 54
                g++ p ++ la++l++++nTv  a k L++ G+
  CTQ29252.1 26 GEVLPPVRELASQLAVNRNTVAAAYKRLVTSGL 58
                55789999*********************9986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.3
      HTH_36  48 eLeqlGyi 55 
                  L+++G++
  CTQ29252.1 383 RLARAGWL 390
                 79*****8 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015       0.4      25      65 ..      33      75 ..      17      78 .. 0.85
   2 ?   -3.1   0.0       3.2   8.1e+03       1      23 [.     347     374 ..     347     375 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                HHHHHHTTSSHHHHHHHHHHHHHTTSEE.ETEE.EEES-HHHH CS
   HTH_Crp_2 25 eelAsmlGltretvsrilseLkreglis.rgrr.irildleaL 65
                +elAs l ++r tv  + ++L   gl   +gr+   i+ ++ L
  CTQ29252.1 33 RELASQLAVNRNTVAAAYKRLVTSGLAVsQGRNgTAIKARDTL 75
                79************************88666444777777766 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.2
                 HHHHHHHHHH...HCTTTC..EEEEEHH CS
   HTH_Crp_2   1 qRlArfLlrl...aeragg..eielplt 23 
                 ++lA+ L r+    +++g+   + lplt
  CTQ29252.1 347 EKLAAALARHgfsHATPGDglNFWLPLT 374
                 6899999887653222222366667776 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1     0.002       5.1      22      64 ..      26      67 ..      16      74 .. 0.83
   2 ?    2.2   0.0     0.092   2.4e+02       6      65 ..     310     369 ..     305     377 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.002
                TCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TC CS
        Rrf2 22 eeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGG 64
                +e    ++e+a++  ++++ ++   ++L  +gl  s +G++G 
  CTQ29252.1 26 GEVLPPVRELASQLAVNRNTVAAAYKRLVTSGLAVS-QGRNGT 67
                55556799************************9776.577775 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.092
                 HHHHHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCE CS
        Rrf2   6 kteyalhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGy 65 
                  ++ + h+l +L++      + ++++ e     ++  ek+ a L+++g+ +++ G g  +
  CTQ29252.1 310 GSQWVSHLLQDLTLACLTDEAFIASMTETRRHYRQQNEKLAAALARHGFSHATPGDGLNF 369
                 555566666666555444445666666666666677899**********99999986555 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013      0.34       3      47 ..      26      68 ..      24      69 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
      HTH_41  3 GdRlktIeelakeleLSvGlvQkALklLeddkaislerrGrlGtf 47
                G+ l+ + ela++l + + +v +A k L+ ++     ++Gr+Gt 
  CTQ29252.1 26 GEVLPPVRELASQLAVNRNTVAAAYKRLVTSGLA--VSQGRNGTA 68
                8899****************************74..589****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3361.16
//
Query:       CTQ29253.1  [L=131]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-10   41.5   0.0    1.6e-10   41.3   0.0    1.0  1  DUF4440    Domain of unknown function (DUF4440)
    2.6e-09   37.4   0.0    3.2e-09   37.1   0.0    1.0  1  SnoaL_3    SnoaL-like domain
    1.1e-06   29.3   0.0    1.4e-06   28.9   0.0    1.1  1  SnoaL_2    SnoaL-like domain
  ------ inclusion threshold ------
      0.012   15.7   0.1      0.016   15.3   0.1    1.2  1  SnoaL_4    SnoaL-like domain
      0.058   13.5   0.1       0.13   12.4   0.1    1.5  1  CaMKII_AD  Calcium/calmodulin dependent protein kinase II ass


Domain annotation for each model (and alignments):
>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   4.5e-14   1.6e-10       2     106 ..       9     117 ..       8     118 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 4.5e-14
                 HHHHHHHHHHHHCT-HHHHHHCEEEEEEEE-TTS-E.EEHHHHHHHHHC.CHCEEEEEEEEEEEEEEE..TTEEEEEEEEEEEECC.TT.EEEEEEEEE CS
     DUF4440   2 aaleealeeafvagdaealaallapdavlvgpsgtv.ldkeellealea.gfaagrslelteeevrvl..gdlAvvtgrytfegrg.dg.epvegrgrf 94 
                 +a++ea  +a+ + d+++l +++a+da lv   g+v ++ke++ +a+ a +   +++l++t  + +v+  g+ A+v+ + + + +  dg ++  ++ r 
  CTQ29253.1   9 KAVIEACDRAISQEDYDTLMSYYAEDAALVVKPGMVvRGKENIRKAFIAiADYFQHRLVVTQGKMEVIegGGNALVIMETRLDIPTaDGiSQ--VTRRA 105
                 7999**********************9777555555268888777774333333577788886666666588************88466444..56699 PP

                 EEEEEEETTEEE CS
     DUF4440  95 tsvwrkegggWr 106
                 t+v++k+g++W 
  CTQ29253.1 106 TYVFQKQGERWL 117
                 ***********6 PP

>> SnoaL_3  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   8.9e-13   3.2e-09       2     110 ..       9     117 ..       8     120 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 8.9e-13
     SnoaL_3   2 ealldafyeaaaegdfdalfalwaddivfigtgadelltgreevrrslkqifakge.gisfeltdvrvtesgdvawvtelldvtaaedgtegegqlrlT 99 
                 +a+++a+ +a+++ d+d+l++++a+d+  +   ++ +++g+e +r+ +  i + ++ ++  +  + +v e g  a+v ++ ++++++ +  ++ + r+T
  CTQ29253.1   9 KAVIEACDRAISQEDYDTLMSYYAEDAALVV-KPGMVVRGKENIRKAFIAIADYFQhRLVVTQGKMEVIEGGGNALVIMETRLDIPTADGISQVTRRAT 106
                 689*********************6666665.5777*****************9966999999*********999999999999988888888888*** PP

     SnoaL_3 100 gvlrrtdggWk 110
                 +v+ +++++W 
  CTQ29253.1 107 YVFQKQGERWL 117
                 **********5 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   3.9e-10   1.4e-06       6      98 ..      17     115 ..      11     118 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 3.9e-10
                 HHHHTTCHHHHHHTEEEEEEEEET.TSEEESHHHHHHHHHHHHH.HEEEEEEEEEEE..EEETTEEEEEEEEEEEEETTSSEEEE..EEEEEEEEETTE CS
     SnoaL_2   6 aalnagdldalaalfapdvvwedp.ggelrGreairaffralfa.afpdlrfeihdv..vadgdrvavewtvtgtipatgrgvtv..rgvdvfrvrdGk 98 
                 +a+++ d+d+l++++a+d+ +    g+ +rG+e ir++f a  +  + +l ++  ++  ++ g +++v ++ +  ip+ +   +v  r++ vf+ ++ +
  CTQ29253.1  17 RAISQEDYDTLMSYYAEDAALVVKpGMVVRGKENIRKAFIAIADyFQHRLVVTQGKMevIEGGGNALVIMETRLDIPTADGISQVtrRATYVFQKQGER 115
                 6999***************987553888*********99988873344445555555878888888888877765444444333355666666655555 PP

>> SnoaL_4  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.1   4.6e-06     0.016       8     110 ..       7     107 ..       4     122 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.6e-06
                 HHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTS..--EESHHHHHHHHHSHHHHHH-EEEEE---EEEE.ETT.EEEEEEEEEEEEEETTEEEEEE CS
     SnoaL_4   8 aIrdlvarygyylDtkdweeladlFtedavvdytgvgegvlegrdairaalrealdgfaltqHllsnpliel.dgd.tAtgrayllatlvrdgdggrqv 104
                 a + ++ ++ +++ + d++ l + ++eda + + ++   v++g++ ir+a+ +  +++ + + ++++   e+ +g   A +++        ++dg  qv
  CTQ29253.1   7 ALKAVIEACDRAISQEDYDTLMSYYAEDAALVVKPG--MVVRGKENIRKAFIAI-ADYFQHRLVVTQGKMEViEGGgNALVIMETRLD-IPTADGISQV 101
                 677888888899999*****************9997..9**********99985.577788888888888887664245554443322.3444444444 PP

                 ..EEEE CS
     SnoaL_4 105 laggry 110
                  + + y
  CTQ29253.1 102 TRRATY 107
                 444444 PP

>> CaMKII_AD  Calcium/calmodulin dependent protein kinase II association domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.7e-05      0.13       7     119 ..      10     118 ..       6     123 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHHHTT-HHHHHHHEEEEEEEE-GGGTT-EEESSHHHHGGGS...SSSS-SEEEEEESEEEEEESTTEEEEEEEEEEEEE-TTS-EEEEEEE CS
   CaMKII_AD   7 klletlleaisegdfetytklcdpeltvfepevlgnlveglefhrfyfekllakrkkavrttilnkrvrllgddsAviayvrlltlldknGkkhtrqse 105
                 +++e   +ais+ d++t  + ++++  + +    g +v g e +r  f  +    ++ + +t  + +v   g ++ vi  +rl  +  ++G+ + +  +
  CTQ29253.1  10 AVIEACDRAISQEDYDTLMSYYAED--AALVVKPGMVVRGKENIRKAFIAIADYFQHRLVVTQGKMEVIEGGGNALVIMETRL-DIPTADGISQ-VTRR 104
                 7889999******************..44455678999******999986665555555455555666555666666666665.6778899988.9999 PP

                 EEEEEEEETTEEEE CS
   CaMKII_AD 106 etrVwekrdgkWki 119
                  t+V++k+ ++W++
  CTQ29253.1 105 ATYVFQKQGERWLC 118
                 9***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1028.69
//
Query:       CTQ29254.1  [L=303]
Description: cysteine synthase B (O-acetylserine sulfhydrolase B) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-69  232.0   0.3    1.5e-68  231.4   0.3    1.3  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.4   0.3   8.2e-73   1.5e-68       2     294 .]       5     281 ..       4     281 .. 0.92

  Alignments for each domain:
  == domain 1  score: 231.4 bits;  conditional E-value: 8.2e-73
                 GGCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHH CS
        PALP   2 tlgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvall 97 
                 ++ ig+TPlv+l+rl  + g ++++KlE+ np gS+KdR+a +++ ++++    +++++++ea+sGN+g+alA++aal G++  +++p+++s+e++a++
  CTQ29254.1   5 EQTIGNTPLVKLQRLGPDNGSEVWVKLEGNNPAGSVKDRAALSMIVEAEKRgeiQPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAM 103
                 6899***************************************999966666*********************************************** PP

                 HHTT-EEEEE..CCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEEC CS
        PALP  98 rllGaevvev..ggdydeavaaaaelaaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepe 193
                 r++Gae+++v  +++ + a+++a e+a++ ++  l++qf+np++  + y+t+g+Ei++q+ g+++++v ++G+ g+i+G++++l+e+   v+++g +pe
  CTQ29254.1 104 RAYGAELILVskEQGMEGARDLALEMAQR-GEGKLLDQFNNPDNPYAhYTTTGPEIWQQTAGRITHFVSSMGTTGTITGVSRFLREQSKPVTIVGLQPE 201
                 **********99999**************.********************************************************9999********* PP

                 TTCGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTCEEEEEEE CS
        PALP 194 gsdalarslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkegdrvvvil 292
                 + +++ + +           +  a+      p+ ++ +l+d    ++  + +++a  +mr+la regi+++ ss+ a+a++ lr a+e ++  +vv+i+
  CTQ29254.1 202 EGSSIPGIR-----------RWPAEY----MPGIFNASLVD----TVLDIHQQDAENTMRQLAVREGIFCGVSSGGAVAGA-LRIARENPGA-VVVAIV 279
                 777777777...........222222....24555555555....5555********************************.8888887777.****** PP

                 -B CS
        PALP 293 tg 294
                 ++
  CTQ29254.1 280 CD 281
                 97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2153.31
//
Query:       CTQ29255.1  [L=364]
Description: sulfate/thiosulfate transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-38  131.2   0.0    5.3e-38  130.6   0.0    1.3  1  ABC_tran         ABC transporter
    2.1e-09   37.6   0.0     0.0014   18.5   0.0    2.2  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    3.6e-09   36.4   0.0    5.9e-09   35.7   0.0    1.3  1  SMC_N            RecF/RecN/SMC N terminal domain
    1.7e-08   34.3   0.1      1e-07   31.7   0.0    2.3  2  TOBE_3           TOBE-like domain
    0.00011   22.6   1.1     0.0012   19.3   1.1    2.2  1  AAA_16           AAA ATPase domain
    0.00087   19.2   0.4      0.036   14.0   0.1    2.2  2  NACHT            NACHT domain
    0.00089   19.0   0.1       0.16   11.7   0.0    2.2  2  AAA_24           AAA domain
    0.00095   19.1   0.1     0.0018   18.2   0.1    1.4  1  RsgA_GTPase      RsgA GTPase
    0.00097   19.4   0.2     0.0039   17.5   0.2    1.9  1  AAA_22           AAA domain
     0.0011   17.9   0.0     0.0017   17.3   0.0    1.2  1  DLIC             Dynein light intermediate chain (DLIC)
     0.0012   19.3   0.0      0.013   15.9   0.0    2.1  1  AAA              ATPase family associated with various cellul
     0.0014   19.2   0.3     0.0061   17.1   0.1    2.3  1  CysA_C_terminal  CysA C-terminal regulatory domain
     0.0017   18.6   0.1     0.0041   17.4   0.1    1.8  1  AAA_28           AAA domain
     0.0021   17.5   0.1        1.8    7.8   0.0    2.2  2  ATPase           KaiC
     0.0031   17.2   0.1     0.0073   16.0   0.1    1.6  1  AAA_29           P-loop containing region of AAA domain
     0.0032   18.0   0.1     0.0061   17.1   0.1    1.4  1  AAA_23           AAA domain
     0.0047   16.4   0.1       0.22   10.9   0.1    2.3  2  TniB             Bacterial TniB protein
     0.0057   16.9   0.1      0.063   13.5   0.1    2.3  1  SbcCD_C          Putative exonuclease SbcCD, C subunit
  ------ inclusion threshold ------
      0.011   15.4   0.4      0.032   14.0   0.0    1.8  2  AAA_30           AAA domain
      0.015   14.8   0.0        1.2    8.5   0.0    2.3  2  PhoH             PhoH-like protein
      0.016   15.1   0.2        0.1   12.5   0.0    2.0  2  NTPase_1         NTPase
      0.021   15.4   0.0       0.06   13.9   0.0    1.8  2  AAA_18           AAA domain
      0.024   13.5   0.5        1.3    7.7   0.0    2.7  2  ABC_ATPase       Predicted ATPase of the ABC class
      0.043   14.0   2.4       0.32   11.2   2.4    2.2  1  AAA_33           AAA domain
      0.048   13.2   0.4       0.48   10.0   0.0    2.2  2  AAA_25           AAA domain
      0.061   12.9   0.0       0.18   11.4   0.0    1.7  2  SRP54            SRP54-type protein, GTPase domain
      0.074   13.1   0.0       0.13   12.3   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.076   12.1   0.2       0.85    8.6   0.1    2.2  2  T2SSE            Type II/IV secretion system protein
       0.11   12.6   0.0       0.78    9.8   0.0    2.1  2  AAA_14           AAA domain
       0.11   12.7   0.0        1.9    8.7   0.0    2.2  2  Roc              Ras of Complex, Roc, domain of DAPkinase
       0.12   12.4   0.3       0.46   10.5   0.0    2.0  2  AAA_5            AAA domain (dynein-related subfamily)
       0.13   11.4   0.0       0.22   10.6   0.0    1.3  1  NB-ARC           NB-ARC domain
       0.13   11.8   0.3        0.3   10.6   0.1    1.6  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.13   11.7   0.0       0.24   10.8   0.0    1.4  1  RecA             recA bacterial DNA recombination protein
       0.15   12.0   0.3         16    5.4   0.0    2.3  2  APS_kinase       Adenylylsulphate kinase
       0.15   11.8   0.0       0.24   11.1   0.0    1.3  1  DEAD             DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.0   1.1e-40   5.3e-38       1     136 [.      18     164 ..      18     165 .. 0.97

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 1.1e-40
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esd 82 
                 l+++sl++  g++va++G++G+GK+tLl+++agl+++t+G+i++ g+d+++  ++  ++++g+++q+  lf+++tv +n                 + +
  CTQ29255.1  18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR--MHARDRKVGFVFQHYALFRHMTVFDNiafgltvlprrerpnaaAIK 114
                 799************************************************..9************************************999999899 PP

                 TCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++k+l+ ++l +l+d+      ++LSgGqkqrvalaral+ +p++lllDEp+
  CTQ29255.1 115 AKVTKLLEMVQLAHLADRYP----AQLSGGQKQRVALARALAVEPQILLLDEPF 164
                 99**********99999988....*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.9e-06    0.0014       2      22 ..      31      51 ..      30      97 .. 0.83
   2 !   17.3   0.0   6.5e-06    0.0032     231     298 ..     131     196 ..     101     201 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.9e-06
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                 +l Gp gsGK++LL+++ +l
  CTQ29255.1 31 VALLGPSGSGKTTLLRIIAGL 51
                689***************998 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 6.5e-06
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHS 298
                 ++ +++lS G+k+  al+ al+  +    +ll+DEp   L+ ++ ++l ++l++l++  +   +++TH+
  CTQ29255.1 131 DRYPAQLSGGQKQRVALARALAVEP---QILLLDEPFGALDAQVRKELRRWLRQLHEeLKFTSVFVTHD 196
                 456899********99999999999...9***********************99999544555888887 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.2e-11   5.9e-09      23     213 ..      27     212 ..       1     217 [. 0.80

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.2e-11
                 TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  23 sksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkk 121
                 s ++ a++Gp GSGK+ ll  i   L ++++ ++r + ++  +++  + +  k + v  ++    + ++ ++  + +++   r+  +  +i+ k  +  
  CTQ29255.1  27 SGQMVALLGPSGSGKTTLLRII-AGLEHQTSGHIRFHGTD--VSR-MHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTKLL 121
                 457899*************999.67888888899987665..333.4567788899999999999999999999999999999999************* PP

                 HHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE...EEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf...ivislreemlekadklvgvtk 213
                 e+ +l + a+ ++ +LSgG+k+ vala  +A++   p+ + llDe   aLD++ +k++ + l++ +++  f   +v+  +ee +e ad++v +++
  CTQ29255.1 122 EMVQLAHLADRYPAQLSGGQKQRVALARALAVE---PQ-ILLLDEPFGALDAQVRKELRRWLRQLHEELKFtsvFVTHDQEEAMEVADRVVVMSQ 212
                 ***************************999975...44.789*******************9999988655222677777788888898887665 PP

>> TOBE_3  TOBE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.6   1.3e+03      34      43 ..     277     286 ..     271     289 .. 0.87
   2 !   31.7   0.0   2.1e-10     1e-07       4      58 ..     289     339 ..     286     341 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.6
      TOBE_3  34 liEvelprdr 43 
                 ++Ev+++r +
  CTQ29255.1 277 PWEVDISRRT 286
                 8******976 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 2.1e-10
      TOBE_3   4 egglpatvrrirpvGpivRlELerlgdtgeliEvelprdrfeelglaeGetvylr 58 
                 ++ lp++v  ++p G++++l +++lg+++e++ v l+ d+    ++++Ge++++ 
  CTQ29255.1 289 DSPLPVQVLEASPKGHYTQLVVQPLGWYDEPLSVVLTGDE----APSRGERLFVG 339
                 678*************************************....9*******985 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.1   2.4e-06    0.0012      22      63 ..      26      86 ..      12     244 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.4e-06
      AAA_16 22 grpelvllsGesGvGKsslvrellralekd....................ggiflrgkcdql 63
                +++++v l G+sG+GK++l+r ++  le +                    ++ f+ +++  +
  CTQ29255.1 26 PSGQMVALLGPSGSGKTTLLRIIA-GLEHQtsghirfhgtdvsrmhardrKVGFVFQHYALF 86
                34489***************9999.5666645555555555555555554344444444444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   7.1e-05     0.036       2      21 ..      30      49 ..      29      61 .. 0.86
   2 ?    3.4   0.0      0.13        65      90     130 ..     160     198 ..     106     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.1e-05
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +v+l G++GsGKTtLl+ +a
  CTQ29255.1 30 MVALLGPSGSGKTTLLRIIA 49
                689*************9886 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.13
                 STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECC CS
       NACHT  90 lDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpr 130
                 lDe    l+++ ++++r++L++l ++  l+ +s+++t   +
  CTQ29255.1 160 LDEPFGALDAQVRKELRRWLRQLHEE--LKFTSVFVTHDQE 198
                 5777777888889999****999999..9999999997665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00032      0.16       2      22 ..      28      48 ..      27      95 .. 0.86
   2 ?    5.2   0.1      0.03        15     106     139 ..     170     204 ..     165     220 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00032
      AAA_24  2 klkiliyGpsgiGKTtlakel 22
                ++++++ Gpsg+GKTtl++ +
  CTQ29255.1 28 GQMVALLGPSGSGKTTLLRII 48
                6789************99765 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.03
      AAA_24 106 elaeefrrllkkl.qelrknvifiahektrkdedp 139
                 ++++e+rr+l++l +el+ + +f+ h +++ +e  
  CTQ29255.1 170 QVRKELRRWLRQLhEELKFTSVFVTHDQEEAMEVA 204
                 799*********6156777**********998865 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   3.6e-06    0.0018      86     131 ..      14      60 ..       2      70 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.6e-06
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  +++ l++++  + + ++++l+G+SG GK+tL+  +++ +++  g+++
   CTQ29255.1  14 RTQVLNDISLDIPSgQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR 60 
                  5566667776666659*********************9899888886 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2   7.8e-06    0.0039       5      43 ..      28      76 ..      26     199 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.8e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee.............erpevv 43
                 +++++ G+sG+GKTtllr ++   ++ + + +             +    v
  CTQ29255.1 28 GQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRfhgtdvsrmhardR---KV 76
                57999*****************9999888888898888877774441...33 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.5e-06    0.0017      20      55 ..      23      58 ..      14      74 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.5e-06
        DLIC 20 sklPsgksvlvlGedgsGkttliaklqGveeekkGr 55
                  +Psg+ v +lG +gsGkttl+  + G+e++  G+
  CTQ29255.1 23 LDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH 58
                569****************************99885 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.6e-05     0.013       2      66 ..      32     162 ..      31     210 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.6e-05
                 EEESSTTSSHHHHHHHHHHH.....HTHEEEEEETTTCSSS.......................................................... CS
         AAA   2 llyGppGtGKTllakavake.....lgvefleisgsellsk.......................................................... 37 
                  l Gp G GKT+l + +a        +++f  +++s++                                                             
  CTQ29255.1  32 ALLGPSGSGKTTLLRIIAGLehqtsGHIRFHGTDVSRMHARdrkvgfvfqhyalfrhmtvfdniafgltvlprrerpnaaaikakvtkllemvqlahla 130
                 699***************984433201333333333322113445555555555555555555555555555555555555555555555556666666 PP

                 ..STTHHHHHHHHHHHHHHHTS.TSEEEEEET CS
         AAA  38 ..yvgesekkirelfkeakeka.kpsilfiDE 66 
                   y  + +   ++ ++ a++ a +p il++DE
  CTQ29255.1 131 drYPAQLSGGQKQRVALARALAvEPQILLLDE 162
                 66888888888888888888888888888888 PP

>> CysA_C_terminal  CysA C-terminal regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.2e-05    0.0061       1      43 []     241     282 ..     241     282 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.2e-05
  CysA_C_terminal   1 NlFhGrvedGklriGglalpvPelagadgqevvayVRPhDlei 43 
                      N + G +++G++++G ++ p+  +++++g +v +++RP +++i
       CTQ29255.1 241 NRLQGVIRGGQFHVGAHRWPLGYTPAYQG-PVDLFLRPWEVDI 282
                      99********************9999988.********99987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   8.3e-06    0.0041       2      72 ..      31     115 ..      30     207 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.3e-06
      AAA_28   2 ivitGgestGKTtlleaLa..ar....gypvv.pEaareileekl.akgedalp....wv.edllafaervleeqleeeaaa.aa 72 
                 ++++G++++GKTtll+ +a  ++     ++ + +++ r+  +++   + +++ +    ++ +d +af   vl  + +  aaa +a
  CTQ29255.1  31 VALLGPSGSGKTTLLRIIAglEHqtsgHIRFHgTDVSRMHARDRKvGFVFQHYAlfrhMTvFDNIAFGLTVLPRRERPNAAAiKA 115
                 899****************885644533445566666666665554222233322222334689999998888877777777444 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0046       2.3      16      35 ..      25      44 ..      15      61 .. 0.90
   2 !    7.8   0.0    0.0037       1.8     138     170 ..     169     202 ..     164     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0046
      ATPase 16 ipegrvvlitGepGtGKtif 35
                ip+g++v + G +G+GKt++
  CTQ29255.1 25 IPSGQMVALLGPSGSGKTTL 44
                9*****************97 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0037
      ATPase 138 avaReilrqlvrvl.kklgvTailvsekssseea 170
                 a++R++lr+ +r+l ++l+ T+++v+  ++++ +
  CTQ29255.1 169 AQVRKELRRWLRQLhEELKFTSVFVTHDQEEAME 202
                 689***********99**********96665444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.5e-05    0.0073      17      39 ..      23      45 ..      16      51 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.5e-05
      AAA_29 17 ieidlkg.atlltGpsGsGKSTll 39
                ++i  +g ++ l GpsGsGK+Tll
  CTQ29255.1 23 LDIP-SGqMVALLGPSGSGKTTLL 45
                5555.55699*************8 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.2e-05    0.0061       2      39 ..       3      48 ..       2      51 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.2e-05
      AAA_23  2 Lkienf.rsf.rdqe...idF...skgltlItGpNGaGKTTildAi 39
                ++i n+ +sf r q    i +   s  ++++ Gp G+GKTT+l+ i
  CTQ29255.1  3 IEIANIkKSFgRTQVlndISLdipSGQMVALLGPSGSGKTTLLRII 48
                777777456652232223455779999****************987 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.097        48      37      56 ..      30      49 ..      16      74 .. 0.82
   2 !   10.9   0.1   0.00044      0.22      91     161 ..     126     194 ..     105     206 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.097
        TniB 37 nlllvGdsnnGKtmivekFa 56
                 + l+G+s  GKt++++  a
  CTQ29255.1 30 MVALLGPSGSGKTTLLRIIA 49
                5789**********998655 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00044
        TniB  91 LealgaplkararvskleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvG 161
                 L++l  ++ a+ +  ++++ +l+   ++++++L++DE   +l   a+ ++e+   l++L++elk + v v 
  CTQ29255.1 126 LAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGAL--DAQVRKELRRWLRQLHEELKFTSVFVT 194
                 778888888888888999999999999**********99999..56667899************9999874 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   0.00013     0.063      32      89 ..     136     180 ..     127     181 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00013
     SbcCD_C  32 tlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 +lSGG+kq    +    ala ++         +++++LDE F+ lD++ +++l + l+
  CTQ29255.1 136 QLSGGQKQR---V----ALARALAV------EPQILLLDEPFGALDAQVRKELRRWLR 180
                 566666632...2....33333333......4899**************999877665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.4e-05     0.032      17      47 ..      28      57 ..      24      76 .. 0.82
   2 ?   -1.7   0.1       4.2   2.1e+03      90      90 ..     205     205 ..     141     256 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.4e-05
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaagg 47
                g ++++l Gp G+GKtt+l+ ++ + ++  g
  CTQ29255.1 28 G-QMVALLGPSGSGKTTLLRIIAGLEHQTSG 57
                4.58999***************988877743 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.2
      AAA_30  90 t 90 
                 +
  CTQ29255.1 205 D 205
                 2 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0025       1.2      17      42 ..      22      52 ..       8      72 .. 0.73
   2 ?    4.1   0.0     0.054        27      53      92 ..     151     196 ..     135     222 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0025
                H....H-SEEEEE--TTSSTTHH.HHHHHHH CS
        PhoH 17 k....kndivfaiGpaGtGKtyl.avalave 42
                +    + ++v  +Gp+G+GKt l  + +++e
  CTQ29255.1 22 SldipSGQMVALLGPSGSGKTTLlRIIAGLE 52
                333447789***********86515556665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.054
                 EEEE-S--T.T----SS---------TTTHHHHHHHTTTS.....- CS
        PhoH  53 iltrpavea.geelGflpgdleekvdpylrplydaLkdll.....g 92 
                 + + p++   +e  G+l+ ++++ ++ +lr l+++Lk +      +
  CTQ29255.1 151 LAVEPQILLlDEPFGALDAQVRKELRRWLRQLHEELKFTSvfvthD 196
                 334444433699************************9765343331 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0    0.0002       0.1       2      48 ..      31      79 ..      30      85 .. 0.82
   2 ?    0.2   0.1       1.2   6.2e+02      87     140 ..     146     203 ..     112     219 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0002
                EEEE--TTSSHHHHHHHHHHHH.....GGGEEEEEEEEE-------EEE CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkss..gvkvgGfyteevreggrrigFk 48
                v++ Gp+G+GKtTl++ ++ l ++    ++ +G  ++++  ++r++gF 
  CTQ29255.1 31 VALLGPSGSGKTTLLRIIAGLEHQTsgHIRFHGTDVSRMHARDRKVGFV 79
                6788**********99887544332337999****************95 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.2
                 HHHHHHHHHH-EEEE--.-STTGGG-H.HHHHHHHHHHT.TTSEEEEE--SS-.-SHH CS
    NTPase_1  87 ealrkalseadviviDE.iGkmElksk.kfkeaveevLk.sekpvlavihrrk.dlal 140
                 +  r    e++++++DE  G +  +++ ++++ ++++ +  +   ++v h ++   ++
  CTQ29255.1 146 ALARALAVEPQILLLDEpFGALDAQVRkELRRWLRQLHEeLKFTSVFVTHDQEeAMEV 203
                 4444444889999999977888888751577777777765555667777766544444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   0.00012      0.06       1      25 [.      31      63 ..      31     132 .. 0.75
   2 ?   -1.5   0.0       7.1   3.6e+03      60      70 ..     175     200 ..     141     233 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00012
      AAA_18  1 IlltGtpGvGKttlakeLskrl.gf.......g 25
                ++l G++G+GKttl + ++ ++ +        g
  CTQ29255.1 31 VALLGPSGSGKTTLLRIIAGLEhQTsghirfhG 63
                6899*************9766522244444553 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 7.1
      AAA_18  60 lldaleenss...............a 70 
                 l + l++  +               a
  CTQ29255.1 175 LRRWLRQLHEelkftsvfvthdqeeA 200
                 22222222222223333333333332 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.13        63     241     264 ..      24      48 ..      20      59 .. 0.87
   2 ?    7.7   0.0    0.0026       1.3     378     420 ..     177     219 ..     133     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.13
                 EE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAl 264
                  ip G ++++ G+   GK+TLL+ +
  CTQ29255.1  24 DIPSGqMVALLGPSGSGKTTLLRII 48 
                 68999899999***********976 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0026
                 HCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE-H CS
  ABC_ATPase 378 drvrelykklgvstilvvggsgdyldvAdtvilmeeykpkdvt 420
                   +r+l+++l  +++ v+   ++ ++vAd+v++m + ++++++
  CTQ29255.1 177 RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAD 219
                 56799*****************************997777665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.4   0.00063      0.32       1      20 [.      30      51 ..      30     234 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00063
      AAA_33  1 lvllvGlpGsGKstlaerl..l 20
                +v l G++GsGK+tl++ +  l
  CTQ29255.1 30 MVALLGPSGSGKTTLLRIIagL 51
                57899**********9977442 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00097      0.48      30      50 ..      25      45 ..      10      50 .. 0.90
   2 ?    1.1   0.1      0.51   2.5e+02      83      98 ..     172     194 ..     127     235 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00097
      AAA_25 30 lpagelallaGapgtGKttla 50
                +p g  ++l G++g+GKttl+
  CTQ29255.1 25 IPSGQMVALLGPSGSGKTTLL 45
                699****************97 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.51
      AAA_25  83 edelrrRlravgeal.......r 98 
                 ++elrr+lr+++e+l       +
  CTQ29255.1 172 RKELRRWLRQLHEELkftsvfvT 194
                 34666666666666622222221 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00036      0.18       3      46 ..      30      73 ..      28      76 .. 0.91
   2 ?   -2.0   0.0       4.7   2.3e+03     116     149 ..     162     195 ..     138     202 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00036
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHH CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAve 46
                +++l+G+ G+GKTt l  +a l ++   ++ +  +D+ R+ A +
  CTQ29255.1 30 MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRMHARD 73
                6899****************999999999********9998865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.7
                 EEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEES CS
       SRP54 116 evllvldattgqeavkqakaFkeavgitgviltk 149
                 e +  lda + +e  +  ++ +e++++t+v +t 
  CTQ29255.1 162 EPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH 195
                 5555678888888888899999999999998886 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00026      0.13      18      40 ..      25      49 ..       4      89 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00026
                H..TEEEEEEESTTSSHHHHHHHHH CS
        TsaE 18 l..gdvilLeGdLGaGKTtlvrgla 40
                +  g++++L G+ G+GKTtl r +a
  CTQ29255.1 25 IpsGQMVALLGPSGSGKTTLLRIIA 49
                145778***************9875 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0017      0.85     126     150 ..      25      49 ..       7      60 .. 0.78
   2 ?    0.9   0.0      0.38   1.9e+02      19      66 ..     171     219 ..     155     252 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0017
       T2SSE 126 vrerglilvsGgTgsGKttllyall 150
                 + + +++ + G+ gsGKttll ++ 
  CTQ29255.1  25 IPSGQMVALLGPSGSGKTTLLRIIA 49 
                 5566788889***********8765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.38
       T2SSE  19 vekpervkvrervdgielrev.eelekaalerlisriaalakldiseer 66 
                 v k+ r ++r+  ++++   v  + ++++++ ++ r+ ++++ +i++  
  CTQ29255.1 171 VRKELRRWLRQLHEELKFTSVfVTHDQEEAMEVADRVVVMSQGNIEQAD 219
                 55555566666666655444415667889999*********99998865 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0016      0.78       3      48 ..      29      73 ..      27      97 .. 0.62
   2 ?    0.1   0.0       1.6   7.8e+02      65      98 ..     155     194 ..     122     202 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0016
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkklad 48
                +++++ G+  +GKTtll+ ++  +  + +  + +   d +   ++d
  CTQ29255.1 29 QMVALLGPSGSGKTTLLRIIAGLEH-QTSGHIRFHGTDVSRMHARD 73
                7899************988875555.55555555555555544444 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.6
      AAA_14  65 ktylflDE......iqevpewekalkslvdegknldvivt 98 
                  ++l+lDE      +q  +e++++l++l++e k   v+vt
  CTQ29255.1 155 PQILLLDEpfgaldAQVRKELRRWLRQLHEELKFTSVFVT 194
                 5667777733333245559999999999998877788877 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0037       1.9       2      22 ..      31      51 ..      30      78 .. 0.72
   2 ?    1.6   0.0      0.64   3.2e+02      87     112 ..     167     192 ..     138     197 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0037
                EEEESSTTSSHHHHHHCHCT- CS
         Roc  2 vvlvGdsgvGKtsllkrfved 22
                v l+G sg+GKt+ll+ +   
  CTQ29255.1 31 VALLGPSGSGKTTLLRIIAGL 51
                689***********9877654 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.64
                 EEGHHHHCHHHHHHHHHHHCSSS-EE CS
         Roc  87 ydsrssenlkeWlkelkkvagkspvi 112
                 +d++  ++l++Wl++l+++ + + v+
  CTQ29255.1 167 LDAQVRKELRRWLRQLHEELKFTSVF 192
                 57888899********9987765555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00092      0.46       2      22 ..      31      51 ..      30      62 .. 0.86
   2 ?   -0.9   0.0       2.9   1.5e+03      59      85 ..     147     175 ..     129     243 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00092
                EEEE--SSSSHHHHHHHGGGG CS
       AAA_5  2 vlLvGppGtgKselaerlaaa 22
                v L+Gp+G+gK++l + +a +
  CTQ29255.1 31 VALLGPSGSGKTTLLRIIAGL 51
                679************999865 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.9
                 ------.G-SEEEEESGGG--.HHHHHHH CS
       AAA_5  59 lvraar.egeilvlDEverae.sevlnsL 85 
                 l ra   e++il+lDE + a   +v ++L
  CTQ29255.1 147 LARALAvEPQILLLDEPFGALdAQVRKEL 175
                 44554467888888886555434444444 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00045      0.22      21      43 ..      29      51 ..      15      68 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00045
                EEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 21 lvvalvGmgGvGKttlakqilnk 43
                 +val G  G+GKttl++ i   
  CTQ29255.1 29 QMVALLGPSGSGKTTLLRIIAGL 51
                499*************9988654 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00061       0.3       3      21 ..      31      49 ..      29      59 .. 0.78
   2 ?   -2.6   0.0         7   3.5e+03     135     135 ..     197     197 ..     165     225 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00061
                EEEEESTTCCHHHHHHHHH CS
        cobW  3 tvltGflGsGKTtLlnhll 21
                + l G+ GsGKTtLl+ + 
  CTQ29255.1 31 VALLGPSGSGKTTLLRIIA 49
                6789***********9876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7
                 H CS
        cobW 135 a 135
                  
  CTQ29255.1 197 Q 197
                 1 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00049      0.24      50      80 ..      25      54 ..       3      77 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00049
                EETTSEEEEEESTTSSHHHHHHHHHHHHHHT CS
        RecA 50 lpkGriieiyGpessGkttlalhaiaeaqkk 80
                +p G+++ + Gp  sGkttl l++ia  +++
  CTQ29255.1 25 IPSGQMVALLGPSGSGKTTL-LRIIAGLEHQ 54
                7******************9.7888865543 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.032        16       2      38 ..      28      63 ..      27      82 .. 0.71
   2 ?    4.4   0.1     0.064        32      87     116 ..     174     202 ..     166     217 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.032
                -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEH CS
  APS_kinase  2 gvvvwltGlsgsGKstianalekkLvekgisvylLdG 38
                g +v l G sgsGK+t+ + ++  L+++    ++  G
  CTQ29255.1 28 GQMVALLGPSGSGKTTLLRIIA-GLEHQTSGHIRFHG 63
                5678899*********988776.55555555555555 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.064
                 HHHHHHHHHHHCHTEEEEEEEE--HHHHHH CS
  APS_kinase  87 eeReaarelleealkfievfvdtplevcee 116
                 e R+  r+l+ee lkf  vfv  + e+++e
  CTQ29255.1 174 ELRRWLRQLHEE-LKFTSVFVTHDQEEAME 202
                 5688999***97.7*******999888765 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00049      0.24      11     105 ..      25     212 ..      15     223 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00049
                 HHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS.............................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................................. RF
        DEAD  11 ilgggdvlvaaeTGsGKTlaflipvlqivyetkgktg.............................................................. 47 
                 i +g+ v + ++ GsGKT+   i +   + +  ++                                                                
  CTQ29255.1  25 IPSGQMVALLGPSGSGKTTLLRIIAG--LEH--QT-Sghirfhgtdvsrmhardrkvgfvfqhyalfrhmtvfdniafgltvlprrerpnaaaikakvt 118
                 4489999***********98655444..422..22.1245566777888899999999***************************************** PP

                 ....................................-EEEEE.ESSHHHHHHHHHHHHHHTTTST..SEEEEEETTSSHHHHHHHHHTTCSEEEEEH CS
                 ....................................xxxxxx.xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  48 ....................................pkaliv.ePtreLaeqtlnnlkkfkkyid..lrvlliiggvaardqlskldngvdivvgtp 105
                                                     p++l++ eP  +L  q+ ++l++++ +++  l+  +++    ++dq ++++   ++vv+  
  CTQ29255.1 119 kllemvqlahladrypaqlsggqkqrvalaralavePQILLLdEPFGALDAQVRKELRRWLRQLHeeLKFTSVF---VTHDQEEAMEVADRVVVMSQ 212
                 *****************************999999977666658999999999999999999754233333333...33444444433344555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 2513.61
//
Query:       CTQ29256.1  [L=291]
Description: sulfate/thiosulfate transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-14   54.1  13.1    1.6e-14   54.1  13.1    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne
    0.00084   19.2   5.2    0.00084   19.2   5.2    2.8  2  DUF4013       Protein of unknown function (DUF4013)
  ------ inclusion threshold ------
        6.9    7.0  11.3        1.1    9.6   4.5    2.9  4  DUF4199       Protein of unknown function (DUF4199)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   5.9      0.22   1.3e+03      24      61 ..      23      75 ..      19      81 .. 0.75
   2 !   54.1  13.1   2.7e-18   1.6e-14       2     180 ..      81     273 ..      80     278 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.22
  BPD_transp_1 24 iivllslPsfvlaillvlvf...............vilsilghlilpviilll 61
                  i v++ +  f+l+++++++f               ++ + l+  +l v+i+l+
    CTQ29256.1 23 IGVGMLVSAFILVVPMLYIFiqafskglmpvlenlANPDMLHAIWLTVMIALI 75
                  66788899999999999999999999999999998777666666666544444 PP

  == domain 2  score: 54.1 bits;  conditional E-value: 2.7e-18
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf............vilsilghlilpviillllsaapyvrlirraalrslpkdl 83 
                   +++G l+a   +++ +++++ll++l ++++++ ++v +++ + +f            +++  + +++ ++++++++ + p+v++    ++ s  +  
    CTQ29256.1  81 LVFGTLLAwlvTRFTFPGRQLLLTLLDIPFAVSPVVAGLVYL-LFygsngplggwldAHNLQIMFAWPGMVLATIFVTCPFVVRELVPVMMSQGSHE 176
                   678888888888*********************999666644.34478*****99996666777888889999999999999999999********* PP

  BPD_transp_1  84 veaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG...lgtllleailgydyseisnggvlalviavlllnlvadilqr 177
                    eaa +lGas wq+fr+v+lPn+   ++ g++l+ ++++g++ +++ + ++     l+++l   +l++dy+    +g++++++++ l+ +++ +l  
    CTQ29256.1 177 DEAAVLLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRgetLSLPLQIELLEQDYN---TVGSFTAAALLTLMAILTLFLKS 270
                   ***********************************************97544369999999999999***9...35677777777777777777777 PP

  BPD_transp_1 178 lld 180
                   +l+
    CTQ29256.1 271 MLQ 273
                   766 PP

>> DUF4013  Protein of unknown function (DUF4013)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   5.2   1.4e-07   0.00084      34     118 ..      12      93 ..       2      99 .. 0.82
   2 ?   -4.8   8.2         3   1.8e+04      92     119 ..     237     276 ..     101     282 .. 0.52

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.4e-07
     DUF4013  34 lPefddwgkllvdGlkafvvslvYllipliialltllvalaslaagdsaagallvlallglllalllvllllllfglllpvalar 118
                 +P + +wgk ++ G+ ++v ++++  +p++ +++  ++ ++++   + a+  +l ++ l++++al++v + l+ fg+ll   ++r
  CTQ29256.1  12 APRI-NWGKWFLIGVGMLVSAFILV-VPMLYIFIQAFSKGLMPVLENLANPDMLHAIWLTVMIALITVPVNLV-FGTLLAWLVTR 93 
                 6888.7*****************77.99999666777788888888888899*********************.55555445555 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 3
     DUF4013  92 l...............glllalllvllllllfglllpvalarf 119
                 l               ++++   l+ l+++l ++l ++   r+
  CTQ29256.1 237 LqielleqdyntvgsfTAAA---LLTLMAILTLFLKSMLQWRL 276
                 03333334444433211111...22244443444444555555 PP

>> DUF4199  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.5   0.00019       1.1      53     110 ..       8      61 ..       4      95 .. 0.75
   2 ?   -1.2   1.8      0.39   2.3e+03     144     161 ..      73      90 ..      62     127 .. 0.66
   3 ?   -1.5   0.2      0.49   2.9e+03      38      38 ..     150     150 ..     110     209 .. 0.56
   4 ?   -1.9   0.0      0.62   3.7e+03       8      19 ..     255     267 ..     243     283 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00019
     DUF4199  53 kkyrkknlgG.fisfgqafgfgflislvagllsavfqyiyfnfidpdfienyiaeilek 110
                 k+y     +   i++g+ f++g+++ + a +l++ + yi+++ + ++++  + + +  +
  CTQ29256.1   8 KRY-----DApRINWGKWFLIGVGMLVSAFILVVPMLYIFIQAFSKGLMPVLENLANPD 61 
                 444.....3338******************************99999998777766555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.39
     DUF4199 144 alqsflgnliiGlilsli 161
                 al+++  nl++G++l+ +
  CTQ29256.1  73 ALITVPVNLVFGTLLAWL 90 
                 444555555555555443 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.49
     DUF4199  38 l 38 
                 +
  CTQ29256.1 150 V 150
                 2 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.62
     DUF4199   8 lvwilifll.ily 19 
                 ++++ ++++ +l+
  CTQ29256.1 255 AALLTLMAIlTLF 267
                 3333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2175.58
//
Query:       CTQ29257.1  [L=277]
Description: sulfate/thiosulfate transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-33  115.2  13.4    2.9e-33  115.2  13.4    2.0  2  BPD_transp_1     Binding-protein-dependent transport system i
  ------ inclusion threshold ------
      0.068   13.2   0.4      0.068   13.2   0.4    2.5  2  Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   4.5      0.12     1e+03     110     178 ..       9      76 ..       5      78 .. 0.72
   2 !  115.2  13.4   3.2e-37   2.9e-33       3     183 ..      76     274 ..      74     276 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.12
  BPD_transp_1 110 iitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrl 178
                   +++g+ l++g +l    l+++l   ++l ++l + ++++  + i+n  v+a+  ++ll  +va i++ +
    CTQ29257.1   9 VLPGFTLSLGTSLLFVCLILLLP-LSALVMQLAQMSWAQYWDVITNPQVVAAYKVTLLSAFVASIFNGV 76 
                   67888888888877766666666.445777777777777777777777777777888888888877765 PP

  == domain 2  score: 115.2 bits;  conditional E-value: 3.2e-37
  BPD_transp_1   3 llGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf...........vilsilghlilpviillllsaapyvrlirraalrslpkdlve 85 
                   ++G+l+a   ++++++++ ll+ l++++++lP+ v ++ l  +f           +++ ++++++l+++++++++++p+v+++++ +l++l  +++e
    CTQ29257.1  76 VFGLLMAwilTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFsvngiygewlaKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEE 172
                   7999*****99************************8888888889999*******9999************************************** PP

  BPD_transp_1  86 aaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG.....lgtllleailgydyseisnggvlalviavlllnlvadilqr 177
                   aa++lGa+rwq frkvvlP + p +++g++l+f+++lg++ ++ f++++ +      +++++  ++++dy+++  +++ ++++a lll+++++ lq 
    CTQ29257.1 173 AAETLGATRWQSFRKVVLPELSPALLAGIALSFTRSLGEFGAVIFIAGNIAwktevTSLMIFIRLQEFDYPAAG-AIASVILAASLLLLFSINTLQS 268
                   ***********************************************9999********************999.********************** PP

  BPD_transp_1 178 lldprv 183
                    + +rv
    CTQ29257.1 269 RFGRRV 274
                   ****98 PP

>> Abhydrolase_9_N  Alpha/beta-hydrolase family N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   5.5     0.061   5.4e+02      56     152 ..      22     124 ..       7     133 .. 0.49
   2 ?   13.2   0.4   7.6e-06     0.068      37     123 ..     187     273 ..     171     277 .] 0.75

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.061
  Abhydrolase_9_N  56 lavvalvvllvalvlaarwQrelralmgaep.lgaaeyllvllvallvfalll....llgrllralvrlla.rllgrvlprrvaavlgvlvvvv 143
                      l+v+++++l + +++ +  Q + ++  ++ + ++  ++ +v l++++v+ ++     ll+  +   +r+   +ll+ ++  + a + +v+ +++
       CTQ29257.1  22 LFVCLILLLPLSALVMQLAQMSWAQYWDVITnPQVVAAYKVTLLSAFVASIFNgvfgLLMAWILTRYRFPGrTLLDALMDLPFALPTAVAGLTL 115
                      3444444455555555555555555555433244444444444444444444300003333333333444423334445556666666666666 PP

  Abhydrolase_9_N 144 lvvllvdgv 152
                      + ++ v+g+
       CTQ29257.1 116 ASLFSVNGI 124
                      666666665 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 7.6e-06
  Abhydrolase_9_N  37 rllrlpepsrrvrrrlrl.alavvalvvllvalvlaarwQrelralmgaeplgaaeyllvllvallvfalllllgrllralvrllarl 123
                      +++ lpe+s+   + + l ++  ++  +++++++    w++e+ +lm   +l+  +y+++ ++a +++a+ lll   +  l +++ r+
       CTQ29257.1 187 KVV-LPELSPALLAGIALsFTRSLGEFGAVIFIAGNIAWKTEVTSLMIFIRLQEFDYPAAGAIASVILAASLLLLFSINTLQSRFGRR 273
                      444.66666666554444044455558999999**********************************999999887777777666644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2317.93
//
Query:       CTQ29258.1  [L=338]
Description: thiosulfate transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-40  137.5   0.3    7.6e-40  137.1   0.3    1.1  1  SBP_bac_11   Bacterial extracellular solute-binding protein
    1.1e-19   71.6   8.3    1.4e-19   71.2   8.3    1.1  1  SBP_bac_1    Bacterial extracellular solute-binding protein
    2.3e-07   30.5   0.6    4.2e-07   29.6   0.6    1.4  1  SBP_bac_6    Bacterial extracellular solute-binding protein
    6.8e-07   29.4   4.3    6.8e-07   29.4   4.3    2.0  2  SBP_bac_8    Bacterial extracellular solute-binding protein
    9.8e-05   21.5   0.0    0.00018   20.7   0.0    1.4  1  PBP_like     PBP superfamily domain
  ------ inclusion threshold ------
      0.092   12.4   2.1        1.4    8.5   2.1    3.0  1  PBP_like_2   PBP superfamily domain
      0.095   12.6   0.0       0.19   11.6   0.0    1.4  1  TFIIE_alpha  TFIIE alpha subunit


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.3     3e-43   7.6e-40       8     230 .]      38     286 ..      33     286 .. 0.85

  Alignments for each domain:
  == domain 1  score: 137.1 bits;  conditional E-value: 3e-43
                 STHHHHH.HHHHHHHHHH-...--EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGG.......GG-EEEEEEEEEEEESTT-TT---S CS
  SBP_bac_11   8 slaaalr.elaaaFeahtg...vkvevsaggsgklarqiadgarpDvwipassawlellaaaglvqa.......esavplassplviavpkgnpkkikg 95 
                 +l aal+    +++++++g   ++++ s++gs+k+a +i++g ++Dv+   + + ++ l+++g + +       +++++  +s++ ++v+kgnpk+i++
  CTQ29258.1  38 ELFAALNpPFEQQWAKDNGgdkLTIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGNLIPadwqsrlPNNSSPFYSTMGFLVRKGNPKNIHD 136
                 4555555345666666666899****************************************999999******************************* PP

                 HHHHHHSS--EEEE--T-TTTTH....H.HHHHGGG--......HHHHHHHHHTEEEEESSHHHHHHH.HHTTT-SEEEEEHHHH...H..HSTTSSEE CS
  SBP_bac_11  96 wadLlkpglklavadPttspsGl....aalalleaaga......qellkalekkvvklgessrqllta.veageadagivyesea...kaaengdklea 180
                 w+dL + ++kl++++P+ts+ ++    aa++++++a +      +++++++ k+v ++ ++ r ++t+ +e+g  d++i+ ese+     + +++++e+
  CTQ29258.1 137 WNDLVRSDVKLIFPNPKTSGNARytylAAWGAADKADGgdkaktEQFMTQFLKNVEVFDTGGRGATTTfAERGLGDVLISFESEVnniRKQYEAQGFEV 235
                 ***********************6555555555555336788999*************99997655553889*************7643335899**** PP

                 EE--TTT--....EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT-B CS
  SBP_bac_11 181 vylpeglnl.dpldypaavlkkaakreaAraFlafLrspeaqailrkyGfr 230
                 v ++ ++++  p++ +   +k ++  +aA+a+l++L++p+aq+i+++y +r
  CTQ29258.1 236 VIPKTNILAeFPVAWVDKNVKANGTEKAAKAYLNWLYTPQAQTIITDYYYR 286
                 ********655555555555566888***********************98 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   8.3   5.6e-23   1.4e-19       5     314 ..      37     277 ..      33     278 .. 0.88

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 5.6e-23
                 HH.HHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHH CS
   SBP_bac_1   5 te.gaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkil 102
                 +e +aal+ ++ +++ k++ g k +i+++  gs +q  +lai +G ++ Dv++            +++++++ + ++ +    ++     ++s      
  CTQ29258.1  37 RElFAALNPPFEQQWAKDNGGDKLTIKQSHAGSSKQ--ALAILQGLKA-DVVTY-----------NQVTDVQILHDKGNLIPADWQSRLPNNS------ 115
                 677899*****777**********************..********77.*****...........************9766655444444444...... PP

                 CEEEESEEEEEEEEEEE...ETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHHH CS
   SBP_bac_1 103 dskvlyvPlyaargliY...NkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaat 198
                        P+y+++g+ +   N++  +         W++lv+ ++kl+ +++k+         sg+a y++la ++ ++                   a+
  CTQ29258.1 116 ------SPFYSTMGFLVrkgNPKNIH--------DWNDLVRSDVKLIFPNPKT---------SGNARYTYLAAWGAAD------------------KAD 173
                 ......39999999999777777777........9******************.........9999999988888888..................888 PP

                 HHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHH.TTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEEEEEBTTCS CS
   SBP_bac_1 199 ylvklyavanltkelkgkgaenkdgaaalalfe.aGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayglaipkgsk 296
                  + k++ +++ t+ lk++ + +++g+ a++ f+ +G  +++i++ +++++  k++++++f++  +k ++  +++                  ++ k+ k
  CTQ29258.1 174 GGDKAKTEQFMTQFLKNVEVFDTGGRGATTTFAeRGLGDVLISFESEVNNIRKQYEAQGFEVVIPKTNILAEFPV----------------AWVDKNVK 256
                 8888999999999********************9**********************************9666665................66777777 PP

                 T...HHHHHHHHHHHTSHHHH CS
   SBP_bac_1 297 n...peaAkkFldfllspeaq 314
                     ++aAk++l++l++p+aq
  CTQ29258.1 257 AngtEKAAKAYLNWLYTPQAQ 277
                 7887888************99 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.6   1.6e-10   4.2e-07      75     235 ..     135     307 ..     114     311 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.6e-10
   SBP_bac_6  75 ksWaDLldPeykgkvalpgnng.sdlfealllalyk....dfg.edgvkkllrnlkanlhpaq.mvkaagslesgepavsvvpyffadilpekkkgk.. 164
                  +W+DL++ +   k  +p++++ ++++++ l+a+      d g +++ ++++ ++ +n+     + + a++  ++++  +v++ f + +   +k++   
  CTQ29258.1 135 HDWNDLVRSDV--KLIFPNPKTsGNARYTYLAAWGAadkaDGGdKAKTEQFMTQFLKNVEVFDtGGRGATTTFAERGLGDVLISFESEVNNIRKQYEaq 231
                 7999**99987..88889988877777777777777899988899999**********99999977888877777767777777777666666665556 PP

   SBP_bac_6 165 nlkvvwPed.Galvspifmlvkkg...kkkelakafidfllspevqailakagg..vfPvvtnpavlnelpegaklk 235
                  ++vv+P+    + +p++++ k+     +++ aka++++l+ p++q+i+++ ++  + P  +++a+++++p+++ ++
  CTQ29258.1 232 GFEVVIPKTnILAEFPVAWVDKNVkanGTEKAAKAYLNWLYTPQAQTIITDYYYrvNNPK-VMDALKDKFPQTELFR 307
                 *********55566899998776676789************************7433343.7777777777776665 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2     0.054   1.4e+02     131     181 ..      30      93 ..       4     110 .. 0.66
   2 !   29.4   4.3   2.7e-10   6.8e-07      92     263 ..     120     287 ..     111     307 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.054
                 G---GGGGGGTHH....ETTEE---H...HHH.........HHHHHHHHHHHHTT-EE-S..-- CS
   SBP_bac_8 131 dpasgwlqaalla....kdgksldddg.gkdgl........kealellkklkdngktydtgada 181
                 ++++++ + ++ a     ++++ +d+g +k ++        k+al++l+ lk++++ty+  +d+
  CTQ29258.1  30 NSSYDVSRELFAAlnppFEQQWAKDNGgDKLTIkqshagssKQALAILQGLKADVVTYNQVTDV 93 
                 45555444444444444133444444333333366677778*************9999765554 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 2.7e-10
                 EEE-EEEEEHHHHHHS.---BHHHHHHHHHHHHHH-SEGG---.GGG.GGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE-S...--SSTTT. CS
   SBP_bac_8  92 etpyvliynkdllekaedpktwdellaaakklkgkfglpdpas.gwl.qaallakdgksldddggkdglkealellkklkdngktydtg.adavsefa. 186
                 +t +++ ++k   +    + +w +l+    ++  k ++p+p + g++ +++l a +g+  ++d    +++++ ++++++ +n+ ++dtg   a+  fa 
  CTQ29258.1 120 ST-MGFLVRKGNPK---NIHDWNDLVR--SDV--KLIFPNPKTsGNArYTYLAA-WGAADKAD--GGDKAKTEQFMTQFLKNVEVFDTGgRGATTTFAe 207
                 44.67777766644...6777888877..666..67889987537773556666.99999998..4445888889*********999884455557775 PP

                 TTSBSEEEE-TTHHHHHH-TTT..SEEEE--S--EEEEEEEEEE..BTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---B CS
   SBP_bac_8 187 nGevaftingswdiaaaqkagk..klgaivpkqgsfaggkglav..pknaknedlaAldFlkwltspenqaalaektgyip 263
                  G     i++++++++++k+ +   +++++pk+  +a +   +v  + +a+  ++aA++ l+wl++p++q+   + + y  
  CTQ29258.1 208 RGLGDVLISFESEVNNIRKQYEaqGFEVVIPKTNILAEFPVAWVdkNVKANGTEKAAKAYLNWLYTPQAQTIITD-YYYRV 287
                 7888888999999***9998643379999************999554444444559**************97776.44443 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   7.2e-08   0.00018      67     100 ..     118     151 ..     115     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 7.2e-08
                 C-HCHCCCCHCCHHHS--BGGGC-S-B-EEEEE- CS
    PBP_like  67 arreqglvvakgnpkkitnwkdladaplrlvnRe 100
                 ++  +g++v+kgnpk+i++w+dl+++++ l+ ++
  CTQ29258.1 118 FYSTMGFLVRKGNPKNIHDWNDLVRSDVKLIFPN 151
                 57889******************99888887655 PP

>> PBP_like_2  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.1   0.00056       1.4       8     281 ..      24     274 ..      20     275 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00056
  PBP_like_2   8 svgeifgaGsttpapalrkladafekaapgak....vny..astGSgagikalrngd..........vdfagsdrplteseia.agwaangaggliqvp 89 
                 +++e+  +  +   +++ +l  +fe+++++      +++  ++ GS++  +a+++g           +d+ +++++     ++ a+w+ +    + + +
  CTQ29258.1  24 QATELLNSSYDVSRELFAALNPPFEQQWAKDNggdkLTIkqSHAGSSKQALAILQGLkadvvtynqvTDVQILHDKG--N-LIpADWQSRL---PNNSS 116
                 44457777777777777777766777777776777744444888888888888888875555554444444444322..2.2224455555...88888 PP

  PBP_like_2  90 vaigaialvvnkdnplnlsreaLakIfsgkItnWndvlglpadgpIkvvhrsdg.sgttflfstalaeqgpwtasgigasgsegvasav.snngaigyv 186
                   ++  ++ v+k np+n             I +Wnd    ++  ++k+++++++ sg  ++  t+la +  w+a++ +a g +++++ + +++     v
  CTQ29258.1 117 PFYSTMGFLVRKGNPKN-------------IHDWND----LVRSDVKLIFPNPKtSG--NARYTYLA-A--WGAAD-KADGGDKAKTEQfMTQFL-KNV 191
                 88999999999999999.............799999....34889999997665155..44447776.4..45433.455566666666666665.666 PP

  PBP_like_2 187 svaywlavkgysladvtngagkfvlptaataasalkvakiasnplawslqpveenia.dgayPlsrftyiivyqpyayhgnnaalakaFldyllsd 281
                 +v + + + g+++++ + g g + +++    +s++++  i +       q+ e  ++ +++  l  f  + v+++ +++  ++++aka+l++l++ 
  CTQ29258.1 192 EVFDTGGR-GATTTFAERGLGDVLISF----ESEVNN--IRK---QYEAQGFE--VViPKTNILAEFPVAWVDKN-VKANGTEKAAKAYLNWLYTP 274
                 66666656.999999999999999999....554444..322...22355555..44366666666666666663.44444599999999999975 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.3e-05      0.19      68      92 ..     279     303 ..     274     312 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.3e-05
                  EEEEEEEEEECCCHCCCHHHHHHHH CS
  TFIIE_alpha  68 swykyywrinyeklvdvvkrkleev 92 
                   +  yy+r+n +k++d++k+k  ++
   CTQ29258.1 279 IITDYYYRVNNPKVMDALKDKFPQT 303
                  5679*****************8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2464.71
//
Query:       CTQ29259.1  [L=299]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-95  318.5   0.0    5.5e-95  318.1   0.0    1.2  1  Dyp_perox  Dyp-type peroxidase family


Domain annotation for each model (and alignments):
>> Dyp_perox  Dyp-type peroxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.1   0.0     3e-99   5.5e-95       1     325 [.       5     294 ..       5     296 .. 0.98

  Alignments for each domain:
  == domain 1  score: 318.1 bits;  conditional E-value: 3e-99
                 BSSSSS-C-SEEEEEEEEE-TTCHHHHHHHHHHHHHHHHHHHHCCCCSCSSHCTCCCTHSTTTT-EEEEEEEHHHHHHTTSCGGS-TTCS----ETTTT CS
   Dyp_perox   1 qagiltplqaaaifvaldvkakdkakleallrkltarverLtagekappadtgealkarkpdsrLtvtvgiGsslfdrlglkekrpkeLkplpelkndk 99 
                 q+gil+++++aai++++++k                +v++L++++k+ ++d++++++a++pd++L+++v++G++++++l+ + + ++eLk++p ++++ 
  CTQ29259.1   5 QSGILPEHCRAAIWIEANLKG---------------DVNALREASKI-FVDNVATFQAKFPDAKLGAVVAFGNNVWRQLSGG-EGADELKDFPVYGKG- 85 
                 89*****************96...............6899999*999.9*******************************99.9**************. PP

                 EEGGGS--SEEEEEEESSHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEHCTSTTCB-TTSSBSSTTS--TCHHHHHHHS-CSSSGGGTT-EEEEEEEEE CS
   Dyp_perox 100 ldapstdgDlliqiraeredvafealrailkafgdavevrdevkGFrsssgkvtarnLlGFvDGTeNpkgeeakeavvlikdedewaagGsYvvvrkir 198
                   apst++Dlli+i + r++v+f++++a+l afgda+ v++e++GFr+    v++r+L GFvDGTeNp+gee++++v++ikd+   +agGsYv+v++++
  CTQ29259.1  86 -LAPSTQYDLLIHILSARHEVNFSVAQAALAAFGDAIDVKEEIHGFRW----VEERDLSGFVDGTENPAGEETRREVAVIKDG--VDAGGSYVFVQRWE 177
                 .9**********************************************....*******************************..************** PP

                 E-HHHHTTS-HHHHHHHHTB-TTT--BTTTTSTTSTTTGSSS-TTSHHHHHSGESTTTEC--EE--EEEEEEE-TTSSCEEEEEEEEEESSCHHCHHHH CS
   Dyp_perox 199 hdleaWdrlslkeQedviGRrKedgaeldddkeaddseekvipkdsHvrlaklkedgkglkilRralsygeGldkvgkldaGllFiaYqrtlenteqml 297
                 h+l++ +r+s+ +Qe++iGR+K  ++e+d+d         ++p +sH+++++lkedgkglki+R++l+yg+     +++++Gl+F+aY+++l n+eq+l
  CTQ29259.1 178 HNLKQLNRMSVPDQEMMIGRTKDANEEIDGD---------ERPVTSHLSRVDLKEDGKGLKIVRQSLPYGT-----ASGTHGLYFCAYCARLYNIEQQL 262
                 *****************************99.........9******************************.....5579******************* PP

                 HHHH....SCB-GGGGCEEEEEEEEEEE-BHH CS
   Dyp_perox 298 qrml....gktdaLlefikavtgglFfapsgv 325
                 ++m+    gk+da+l+f+k+vtgg++faps +
  CTQ29259.1 263 LSMFgdtdGKRDAMLRFTKPVTGGYYFAPSLE 294
                 *****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2262.33
//
Query:       CTQ29260.1  [L=191]
Description: hypothetical protein CH1034_260029 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-81  271.9   0.3      2e-81  271.7   0.3    1.0  1  DUF1131   Protein of unknown function (DUF1131)


Domain annotation for each model (and alignments):
>> DUF1131  Protein of unknown function (DUF1131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.7   0.3   1.1e-85     2e-81       2     170 .]      24     191 .]      23     191 .] 0.99

  Alignments for each domain:
  == domain 1  score: 271.7 bits;  conditional E-value: 1.1e-85
     DUF1131   2 lswsslsPlnWfgsslevseqGvgeitastalteeaieealdgdyrlrsGmetenGkivsifqalkddkvklvisGqekgkveridvldkeiktewgvk 100
                 ++ws++ P+nWfg+s+ev+eqGvg++tast+l+e+ai++al++dyrlrsGm+t++G+iv++f+alk+++v+l+i+G ++g ++ridv d++ikt++gvk
  CTQ29260.1  24 VNWSAAYPWNWFGASTEVTEQGVGKLTASTPLNEQAISDALGSDYRLRSGMKTDKGNIVHYFEALKNNSVALTING-DNGAISRIDVRDADIKTASGVK 121
                 79**************************************************************************.********************** PP

     DUF1131 101 iGtpfsdlyskafgaCkkgseddeesveCkapqskhvsyvfsGeWeGPeglmPsddtlknWkvskivWrr 170
                 iGtpfsdlyskafg+C+kgs+d+ + veC+a+ s+h+sy f+G+W+GP++lmPsddtlknWkvski+Wrr
  CTQ29260.1 122 IGTPFSDLYSKAFGNCQKGSHDNGAVVECQAEGSQHISYAFTGHWSGPDELMPSDDTLKNWKVSKIIWRR 191
                 ********************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1521.04
//
Query:       CTQ29261.1  [L=149]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-48  163.7  10.4    3.7e-48  163.6  10.4    1.0  1  DUF2919   Protein of unknown function (DUF2919)


Domain annotation for each model (and alignments):
>> DUF2919  Protein of unknown function (DUF2919)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.6  10.4   2.1e-52   3.7e-48       3     145 ..       8     145 ..       6     146 .. 0.98

  Alignments for each domain:
  == domain 1  score: 163.6 bits;  conditional E-value: 2.1e-52
     DUF2919   3 iedyDehgrlkpPlllwlvllflaRawvvfvaagasreqgaaLlalfYPdkssfylgLalgvpalllllligrrkkssewleklwragrplllllllvd 101
                 + d+D+hgrl++Pll+w+vll++aR+wv+f++agasr+qg+a+l+lfYPd+++f+lgL+ gvpa+l++ll+g+r++    l++lwra+r+ll+l++++ 
  CTQ29261.1   8 PADFDAHGRLRLPLLFWCVLLLQARTWVLFLMAGASRQQGDAILNLFYPDHERFWLGLLPGVPAVLAFLLSGYRQR----LPRLWRAMRWLLVLSQVLL 102
                 789***********************************************************************77....******************* PP

     DUF2919 102 lllqlyrlalsheafswltaltlllllwvllyllkskrlrdcfa 145
                 ll+q + l+ls+e+ s lt++ l+++ ++l++ll+s+rl +cf+
  CTQ29261.1 103 LLWQPM-LWLSGESPSSLTIALLVADGYALWWLLTSRRLGACFH 145
                 ******.************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1143.89
//
Query:       CTQ29262.1  [L=141]
Description: putative acyltransferase with acyl-CoA N-acyltransferase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-20   72.8   0.1    3.3e-20   72.5   0.1    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.3e-13   50.4   0.3    3.9e-13   49.6   0.3    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.1e-12   48.0   0.0    1.6e-12   47.5   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.1e-08   34.3   0.1    1.1e-06   28.7   0.1    2.2  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    2.5e-08   33.8   0.0    3.5e-08   33.3   0.0    1.3  1  FR47             FR47-like protein
    3.2e-07   30.6   0.1    4.3e-07   30.2   0.1    1.3  1  Acetyltransf_6   Acetyltransferase (GNAT) domain
    0.00044   20.0   0.0    0.00053   19.7   0.0    1.1  1  PanZ             Acetyltransferase (GNAT) domain, PanZ
     0.0023   18.1   0.0     0.0041   17.3   0.0    1.4  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
     0.0038   17.9   0.0     0.0047   17.6   0.0    1.2  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.015   15.4   0.0      0.022   14.9   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
      0.016   14.7   0.0      0.017   14.6   0.0    1.2  1  Acetyltransf_15  Putative acetyl-transferase
      0.052   13.5   0.0       0.08   12.9   0.0    1.3  1  Acetyltransf_13  ESCO1/2 acetyl-transferase
      0.084   13.1   0.0       0.13   12.5   0.0    1.2  1  Gly_acyl_tr_C    Aralkyl acyl-CoA:amino acid N-acyltransferas
       0.18   11.3   0.0       0.23   11.0   0.0    1.2  1  GNAT_acetyltran  GNAT acetyltransferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.1   2.6e-23   3.3e-20       5     117 .]      15     123 ..      11     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 2.6e-23
                     HHHHHHHTH.HHHHHHHHHHHHHHHHSTTCEEEE.EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE CS
  Acetyltransf_1   5 vellvesff.ppnedaseeefeesfsleaegllv.aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikki 97 
                     v+l++++    p++d+++++ ++   +++ +l++ ae +ge++G++++  + +    ++  + l V+peyrg+G++ aLl+ le+++  +g+ ki
      CTQ29262.1  15 VTLWERCDLlRPWNDPEMDIERKL--NHDVSLFLvAEVNGEVVGTVMGGYDGH----RGSAYYLGVHPEYRGRGIANALLNRLEKKLIARGCPKI 103
                     555555544699********6666..455655555******************....6777779******************************* PP

                     EEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  98 vlaveedndaairlYeklGF 117
                      + v+ednd  +++Ye+lG+
      CTQ29262.1 104 NIMVREDNDVVQGMYERLGY 123
                     999****************8 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.3   3.1e-16   3.9e-13       4      75 ..      44     124 ..      41     125 .. 0.73

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 3.1e-16
                     EEEEEEETTEEEEEEEEEEES..TCTEEEEE-GGGTTSSHHHHHHH.HTT....SEEE...EEEEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7   4 evfVaeddgkivGfialslld..aeitrlaVdpeyrgkGiGraLle.aae....kgii...leqlelnaekaikfYeklGFe 75 
                      ++Vae +g++vG++    ++  ++  +l V+peyrg+Gi+ aLl+ +++    +g+    +  ++ +++  +++Ye+lG+e
      CTQ29262.1  44 LFLVAEVNGEVVGTVMGGYDGhrGSAYYLGVHPEYRGRGIANALLNrLEKkliaRGCPkinI-MVREDNDVVQGMYERLGYE 124
                     699**********999888766555555*****************95322356688764321.22333337799*******8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   1.2e-15   1.6e-12      22     110 ..      34     127 ..      27     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 1.2e-15
  Acetyltransf_10  22 lrerieegealllvaeeggkivGvi..elrdgs..hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkav 109
                      +++++++   l+lvae++g++vG++  ++ dg+    + l V+peyrg+Gi++aLl+++e+++  +g  +  + v++++   +++Ye+lG++  
       CTQ29262.1  34 IERKLNHDVSLFLVAEVNGEVVGTVmgGY-DGHrgSAYYLGVHPEYRGRGIANALLNRLEKKLIARGCPKiNIMVREDNdVVQGMYERLGYEYA 126
                      56777788899*************95444.4444599999**********************878888778********99999*******966 PP

  Acetyltransf_10 110 g 110
                      +
       CTQ29262.1 127 D 127
                      5 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   8.9e-10   1.1e-06       1     128 []       2     126 ..       2     126 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 8.9e-10
                     .EEEE-GGGHHHHHHHHHHHTT----H...HHHHHHHHHHTTSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHH CS
  Acetyltransf_9   1 eirelteedldevlellkyaFqdeesple.eireyfrklleesrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskL 94 
                     eir  +++d++ev+ l++++   ++   + e++ + +   + s +l+ae nge+vg+++        +G   + +  +  +v+pe+rgrg++++L
      CTQ29262.1   2 EIRVFRQQDFEEVVTLWERCDLLRPWN-DpEMDIERKLNHDVSLFLVAEVNGEVVGTVM--------GGYDGHRGSAYYLGVHPEYRGRGIANAL 87 
                     689999999********9997666655.4366544444555567999999******986........6788888888999*************** PP

                     HHHHHHHHHHTT--EEEE--SSH.....HHHHTTT-EE. CS
  Acetyltransf_9  95 laraleemreegqplsllfPssi.....piYrrfGyeia 128
                     l+r+ +++ ++g p + ++ ++      ++Y+r+Gye+a
      CTQ29262.1  88 LNRLEKKLIARGCPKINIMVREDndvvqGMYERLGYEYA 126
                     *******************9554444559*******985 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   2.7e-11   3.5e-08      22      80 ..      67     126 ..      46     130 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 2.7e-11
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S.-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiaergk.tvllvvvasNtpsirlyeklGfeki 80 
                 g+ + l v+pe r+rG +  l + l k++++rg  ++ ++v+++N+  + +ye+lG+e +
  CTQ29262.1  67 GSAYYLGVHPEYRGRGIANALLNRLEKKLIARGCpKINIMVREDNDVVQGMYERLGYEYA 126
                 6778899************************99637899******************976 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1   3.4e-10   4.3e-07      73     135 ..      45     107 ..       3     112 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 3.4e-10
  Acetyltransf_6  73 lyvlrldgrpvAvalglrsgdrlyywlggydpelaklspgllllweliedaaeeGlrrfdlgg 135
                     ++v++++g++v++++g ++g+r  +++ g++pe+++ ++   ll +l + ++++G+ +++ + 
      CTQ29262.1  45 FLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEYRGRGIANALLNRLEKKLIARGCPKINIMV 107
                     678999**************************************************9988765 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.2e-07   0.00053      11     115 ..       7     118 ..       1     128 [. 0.70

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.2e-07
        PanZ  11 saqdkiDLakIy.........paqsaealeaalteegalf.aarFNdRlLgAvkveledkeaelsdlcVRevTRrRGVgsyLleearrqa.....Pevk 94 
                  +qd      ++           + ++ +e++l+++ +lf +a  N    g v   ++++ +    l V  + R RG+++ Ll++  +++     P+++
  CTQ29262.1   7 RQQDFEEVVTLWercdllrpwNDP-EMDIERKLNHDVSLFlVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEYRGRGIANALLNRLEKKLiargcPKIN 104
                 555555555555555555521433.45578888888877648*****************************************9998887444445555 PP

        PanZ  95 swvlaeedvkeldlavlqafl 115
                  +v  ++       +v+q++ 
  CTQ29262.1 105 IMVREDN-------DVVQGMY 118
                 4443333.......3445555 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.2e-06    0.0041      41     137 ..      38     126 ..       3     130 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.2e-06
  Acetyltransf_4  41 lealdsekeyvflvae.sdrivGyaylgqfkkrakdwkaelsvyla.erdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalG 133
                     l++       +flvae ++++vG+  +g      +d++    +yl  +   + +g++ +l++ le+ l + +  ++++ +  +n+  + ++++lG
      CTQ29262.1  38 LNH----DVSLFLVAEvNGEVVGTVMGG------YDGHRGSAYYLGvHPEYRGRGIANALLNRLEKKLIARGCPKINIMVREDNDVVQGMYERLG 122
                     444....35689************9998......78888888898778899******************************************** PP

  Acetyltransf_4 134 Felv 137
                     +e +
      CTQ29262.1 123 YEYA 126
                     *976 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.7e-06    0.0047       4     138 .]       3     124 ..       1     124 [. 0.75

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.7e-06
  Acetyltransf_3   4 LrplteeDlealfelrsdpevmrylpepltleeaeewlerawaeeseeegygwaivlkdtgviGsv.glrdleeedeeaelgymlapsfwgkGya 97 
                     +r ++++D+e+++ l+++ ++ r  p++ ++ + e++l++        +   +++ + +++v+G+v g   +++ ++     + ++p+++g+G+a
      CTQ29262.1   3 IRVFRQQDFEEVVTLWERCDLLR--PWNDPEMDIERKLNH--------DVSLFLVAEVNGEVVGTVmGG--YDGHRG-SAYYLGVHPEYRGRGIA 84 
                     67788888888877777777776..777777777777772........33448887644438****444..444433.4555567799******* PP

  Acetyltransf_3  98 teavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                        ++ l + + ++   +++ + + ++N   +  +e+lG+e
      CTQ29262.1  85 NALLNRLEKKLIARG-CPKINIMVREDNDVVQGMYERLGYE 124
                     ***********8777.***********************85 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   1.7e-05     0.022      22      49 ..      64      91 ..      45     103 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-05
  Acetyltransf_CG 22 egvldfthTeVpeelrGkGiAkkLvkaa 49
                     +++   +   V++e+rG+GiA +L ++ 
       CTQ29262.1 64 GHRGSAYYLGVHPEYRGRGIANALLNRL 91
                     5667788999**************9765 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.3e-05     0.017      75     102 ..      69      96 ..      43     131 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
  Acetyltransf_15  75 iYtlyvsekyrgkGlakklLeeslkelk 102
                       Y+l v+++yrg+G+a  lL++  k+l+
       CTQ29262.1  69 AYYLGVHPEYRGRGIANALLNRLEKKLI 96 
                      699*****************99877665 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.3e-05      0.08      12      35 ..      74      97 ..      72     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.3e-05
  Acetyltransf_13 12 vssshRrkgiAtkLldaarenfiy 35
                     v++++R +giA++Ll+ + ++ i 
       CTQ29262.1 74 VHPEYRGRGIANALLNRLEKKLIA 97
                     89***************9999886 PP

>> Gly_acyl_tr_C  Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0    0.0001      0.13      28      75 ..      75     123 ..      63     128 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0001
  Gly_acyl_tr_C  28 lpkYrrqglvahvivkqakalekkgiP.vYshvdkenekvqklseslgh 75 
                     p+Yr +g    ++ + +k+l  +g P + + v ++n +vq + e+lg+
     CTQ29262.1  75 HPEYRGRGIANALLNRLEKKLIARGCPkINIMVREDNDVVQGMYERLGY 123
                    59*************************567899***********99987 PP

>> GNAT_acetyltran  GNAT acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018      0.23     164     237 ..      50     126 ..      43     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
  GNAT_acetyltran 164 kngeivsgasSysvyekgieieidTkedyrrkgLAtivaaalileclkrglyPsWDaa....neaSvaLaekLGYefe 237
                       nge+v  ++ +   ++g       +++yr++g A+++ ++l ++ + rg +P+   +    n     ++e+LGYe+ 
       CTQ29262.1  50 VNGEVVGTVMGGYDGHRGSAYYLGVHPEYRGRGIANALLNRLEKKLIARG-CPKINIMvredNDVVQGMYERLGYEYA 126
                      5677777777777777777777889*****************99999999.588888888888888999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1109.44
//
Query:       CTQ29263.1  [L=290]
Description: N-acetylmuramoyl-l-alanine amidase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-52  177.7   0.0    4.1e-52  176.8   0.0    1.4  1  Amidase_3       N-acetylmuramoyl-L-alanine amidase
     0.0081   16.0   1.9     0.0081   16.0   1.9    1.9  2  TAT_signal      TAT (twin-arginine translocation) pathway sig
  ------ inclusion threshold ------
       0.11   12.8   0.2         18    5.7   0.1    3.0  3  RICTOR_phospho  Rapamycin-insensitive companion of mTOR, phos


Domain annotation for each model (and alignments):
>> Amidase_3  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.8   0.0   6.9e-56   4.1e-52       1     174 [.      60     274 ..      60     275 .. 0.99

  Alignments for each domain:
  == domain 1  score: 176.8 bits;  conditional E-value: 6.9e-56
   Amidase_3   1 ividpGHGgkdpGavgknglkEkdlnlkvalklaklLeakgaeVvltrdddksvslkeranianksradlfvsiHadsaanssasGvevfy........ 91 
                 +++dpGHGg d+Ga+g ng kEk ++l++a++++++L+++g++ +ltr+ d++++l++r++ia++++adlf+siHad+++n+sa G++vf         
  CTQ29263.1  60 VMLDPGHGGIDTGAIGHNGSKEKHVVLAIAKNVRSILRSNGIDARLTRTGDTFIPLYDRVEIAHQHGADLFMSIHADGFTNPSAAGASVFAlsnrgass 158
                 89************************************************************************************************* PP

   Amidase_3  92 ..................................leknekkaeskrlaksiqkelkkklglknrgvkeannlyvlrktkipavlvElgfisnpedakll 156
                                                   l ++++ ++s +l   i k++k  ++l++r++++a  + vl++++ip+vlvE+ fi+np+++kll
  CTQ29263.1 159 amakylsdrenradevagkkatdkdhllqqvlfdLVQTDTIKNSLTLGSHILKKIKPVHKLHSRNTEQAA-FVVLKSPSIPSVLVETSFITNPNEEKLL 256
                 **********************************************************************.**************************** PP

   Amidase_3 157 kseeyqeklakaiaegik 174
                  ++++++k+a+aia+gi 
  CTQ29263.1 257 GTTAFRQKIATAIANGII 274
                 ****************96 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.9   1.4e-06    0.0081       3      25 ..      12      34 ..      11      35 .. 0.89
   2 ?   -3.0   0.6       1.3     8e+03      12      15 ..     143     146 ..     142     152 .. 0.46

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.4e-06
  TAT_signal  3 SRRdFLKgsAAaaAAaalggcaa 25
                SRR+ LK+++Aa+ + ++++ ++
  CTQ29263.1 12 SRRQVLKAGLAAMTLSGVASQVS 34
                9************9999998765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
  TAT_signal  12 AAaa 15 
                 AA+a
  CTQ29263.1 143 AAGA 146
                 3333 PP

>> RICTOR_phospho  Rapamycin-insensitive companion of mTOR, phosphorylation-site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.012        74       1      49 [.       6      59 ..       6      71 .. 0.77
   2 ?   -1.2   0.0      0.43   2.6e+03      61      73 ..     107     120 ..      76     134 .. 0.77
   3 ?    5.7   0.1    0.0031        18      69      96 ..     231     258 ..     197     264 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.012
  RICTOR_phospho  1 pftilassrlvrnrilnsltlpnkklrsssdPk.....gGklsssesksglrrn 49
                    p+ ilas+r v    l ++tl++   + s++ +      G+ +++ +k+g rr+
      CTQ29263.1  6 PLKILASRRQVLKAGLAAMTLSGVASQVSAKEQplktsNGHSKPAAKKAGGRRI 59
                    6899*******9999*******98888777654334545666667777788876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.43
  RICTOR_phospho  61 sqgdeftPvf.rvp 73 
                      +gd+f P++ rv+
      CTQ29263.1 107 RTGDTFIPLYdRVE 120
                     57999999997665 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0031
  RICTOR_phospho  69 vfrvpksktlsletsfvgsktaedqgst 96 
                     v + p ++++ +etsf+ + ++e+   t
      CTQ29263.1 231 VLKSPSIPSVLVETSFITNPNEEKLLGT 258
                     45889999**********9999876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2387.92
//
Query:       CTQ29264.1  [L=299]
Description: coproporphyrinogen III oxidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.7e-133  443.3   0.0     3e-133  443.1   0.0    1.0  1  Coprogen_oxidas  Coproporphyrinogen III oxidase


Domain annotation for each model (and alignments):
>> Coprogen_oxidas  Coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  443.1   0.0  1.7e-137    3e-133       1     296 []       7     299 .]       7     299 .] 0.97

  Alignments for each domain:
  == domain 1  score: 443.1 bits;  conditional E-value: 1.7e-137
  Coprogen_oxidas   1 kveellkelqdeivkaleeldgkakfkedewereeggggisrvledgkvfekagvnvsvveg.klpesavkqmraekkeeleeleffaagvslv 93 
                      +v+++l +lqd+++++l+++d +a f ed+w+re gggg+srvl++g+vfe+agvn+s+v+g ++p+sa++++     +el++++f+a+gvslv
       CTQ29264.1   7 QVKTFLLQLQDNLCQQLSAVD-GAPFIEDAWQREGGGGGRSRVLREGRVFEQAGVNFSHVHGdAMPASATAHR-----PELAGRSFEAMGVSLV 94 
                      5899*****************.99*********99***************************99999999999.....99************** PP

  Coprogen_oxidas  94 ihprnPlvPtvhlnyryfeaee..kkkawWFgGgaDLtPsylfeedavhfHktlkeacdkhdkelypkfKkwcDeyFyikhRkeaRGvGGiffd 185
                      +hp nP+vPt h+n+r+f ae+     +wWFgGg+DLtP+y feedavh+H+t++++c ++++e+yp++KkwcD+yFy+khR+e+RG+GG+ffd
       CTQ29264.1  95 VHPLNPYVPTSHANVRFFIAEKpgADPVWWFGGGFDLTPYYGFEEDAVHWHRTARDLCLPFGEEVYPRYKKWCDDYFYLKHRQEQRGIGGLFFD 188
                      ********************99764679****************************************************************** PP

  Coprogen_oxidas 186 dlkes.aeelfafvksvgeaflpaYlpivekrkdtpyteeerewqllrrgryveFnLvyDrGtkfGLqtegrvesiLmslPptarweyelepee 278
                      dl++  ++++faf+++vg+ + +aYlpive+rk tpy+e+er++ql+rrgryveFnLv+DrGt fGLqt+gr+esiLms+Pp +rwey+++pe+
       CTQ29264.1 189 DLNTPdFDHCFAFMQAVGNGYADAYLPIVERRKATPYGERERHFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEYDYQPEP 282
                      ***545**************************************************************************************** PP

  Coprogen_oxidas 279 gseeaellevlkkpreWv 296
                      gs+ea+l e++ + r+W+
       CTQ29264.1 283 GSPEAALSEFI-QVRDWL 299
                      *******8755.699995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       219  (0.0122148); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2512.38
//
Query:       CTQ29265.1  [L=350]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-23   80.8   0.9    3.4e-22   78.5   0.0    2.5  3  HTH_18        Helix-turn-helix domain
    7.3e-14   51.4   0.0    3.1e-07   30.3   0.0    3.3  3  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
     0.0061   16.8   0.1       0.19   12.0   0.0    3.0  3  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
  ------ inclusion threshold ------
      0.019   14.9   0.0       0.05   13.6   0.0    1.7  1  HTH_11        HTH domain


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.2   5.4e+03      35      60 ..     161     188 ..     159     192 .. 0.72
   2 ?   -1.5   0.0       0.7   3.1e+03      30      48 ..     239     257 ..     229     259 .. 0.72
   3 !   78.5   0.0   7.6e-26   3.4e-22       1      79 [.     262     342 ..     262     344 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.2
                 HHHHHHHSSS---HHH..HHHHTT-S-H CS
      HTH_18  35 rArrlLlentglsvae..iAlalGFsdl 60 
                 r+ ++L+++++l v e   A+ +GF  +
  CTQ29265.1 161 RVLHMLRNQSALAVREphKAALWGFVQQ 188
                 6777787777777776667888888765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.7
                 HHHHHHHHHHHHSSS---H CS
      HTH_18  30 rlRlerArrlLlentglsv 48 
                 r+ l +Ar+  len++ ++
  CTQ29265.1 239 RRLLAQAREYVLENSAEPL 257
                 5667888888888887776 PP

  == domain 3  score: 78.5 bits;  conditional E-value: 7.6e-26
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHS..SS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLle..ntglsvaeiAlalGFsdlsrFsrafrklfgetPseyr 79 
                 l+++l vsrrtLq +f++ lg+ p ++l+r+Rl+++rr+L++  ++  +v+e+A+++GF++l++F++++++lf e Ps ++
  CTQ29265.1 262 LCQQLYVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRRELISpwSERETVKEAAMQWGFWHLGQFATDYQQLFAEKPSMTL 342
                 799**************************************8766799******************************987 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.22     1e+03      27      38 ..      75      86 ..      74      87 .. 0.80
   2 !   30.3   0.0     7e-11   3.1e-07       4      42 .]     252     290 ..     249     290 .. 0.92
   3 !   16.8   0.0   1.2e-06    0.0053       1      38 [.     301     339 ..     301     343 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.22
                HHHHHHSSS-HH CS
    HTH_AraC 27 rlFkketGmtPs 38
                ++F+++tG   +
  CTQ29265.1 75 QVFREYTGLALR 86
                79******8755 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 7e-11
                 CCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   4 nlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 n +++lt+ d++++l++Sr++++ +F++++G+ P+++++
  CTQ29265.1 252 NSAEPLTVLDLCQQLYVSRRTLQNAFHAILGIGPNAWLK 290
                 55789********************************96 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 1.2e-06
                 HHCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HH CS
    HTH_AraC   1 LrenlstnltiediAdelgf.SrsyFsrlFkketGmtPs 38 
                 L++ +s++ t+++ A+++gf +  +F + +++ + ++Ps
  CTQ29265.1 301 LISPWSERETVKEAAMQWGFwHLGQFATDYQQLFAEKPS 339
                 68899***************************9877776 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.16   7.3e+02      64      76 ..       4      16 ..       2      24 .. 0.81
   2 ?   -1.6   0.0      0.72   3.2e+03      46      71 ..     126     158 ..     116     159 .. 0.79
   3 !   12.0   0.0   4.2e-05      0.19      48      84 ..     297     335 ..     273     340 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.16
                  HTS-EEEEEEEEE CS
  Glyoxalase_4 64 ehgeglhhlaywv 76
                  ++ + lhhl+++ 
    CTQ29265.1  4 RRSANLHHLCCEA 16
                  57889*****985 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.72
                   TTEEEEEEEESSTT........-THHHTS-EEEE CS
  Glyoxalase_4  46 gsvqieLieplegp........eflaehgeglhh 71 
                   g  + eL  p++++        e +a+h   lhh
    CTQ29265.1 126 G-TEFELSTPDDYTilgvvisqEVIARHASFLHH 158
                   4.57899999999988888888999999999998 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 4.2e-05
                   EEEEEEEESSTT-THHH..TS-EEEEEEEEES-HHHHHH CS
  Glyoxalase_4  48 vqieLieplegpeflae..hgeglhhlaywvddldaava 84 
                   v+ eLi+p++++e+++e   ++g++hl+ + +d+++  a
    CTQ29265.1 297 VRRELISPWSERETVKEaaMQWGFWHLGQFATDYQQLFA 335
                   6679*************999*************998765 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.1e-05      0.05       9      43 ..     250     284 ..     242     299 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
      HTH_11   9 LleargpisgeeLAeeLnvSrrtvrrdIkaLeelg 43 
                 L ++ +p++  +L ++L vSrrt ++   a+  +g
  CTQ29265.1 250 LENSAEPLTVLDLCQQLYVSRRTLQNAFHAILGIG 284
                 6677788******************9988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2808.96
//
Query:       CTQ29266.1  [L=165]
Description: putative ethanolaminosome structural protein with putative role in ethanolamine utilization [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-38  128.7   2.2    5.9e-38  128.7   2.2    2.0  2  EutK_C    Ethanolamine utilization protein EutK C-terminus
    1.2e-21   76.5   2.7    2.7e-21   75.4   0.9    2.0  2  BMC       BMC domain
     0.0071   16.7   0.0      0.022   15.2   0.0    1.7  2  FaeA      FaeA-like protein
  ------ inclusion threshold ------
       0.01   15.6   0.3      0.028   14.2   0.3    1.7  1  HTH_IclR  IclR helix-turn-helix domain
      0.065   13.1   0.0       0.16   11.9   0.0    1.6  2  TrmB      Sugar-specific transcriptional regulator TrmB


Domain annotation for each model (and alignments):
>> EutK_C  Ethanolamine utilization protein EutK C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3       0.6   2.1e+03      11      25 ..      54      68 ..      50      71 .. 0.86
   2 !  128.7   2.2   1.7e-41   5.9e-38       1      55 []     107     161 ..     107     161 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.6
      EutK_C 11 LasvrqGmtaGevaa 25
                La+ r  + aG  aa
  CTQ29266.1 54 LAACRAALDAGAAAA 68
                789999999999888 PP

  == domain 2  score: 128.7 bits;  conditional E-value: 1.7e-41
      EutK_C   1 PesaeaLLaLLasvrqGmtaGevaahfaWPLekarqvLeqLfsdGaLrkrssrYr 55 
                 P+s+eaLL+LLasvrqGmtaGevaahfaWPL+karq+LeqLfs+G+LrkrssrYr
  CTQ29266.1 107 PASSEALLTLLASVRQGMTAGEVAAHFAWPLDKARQALEQLFSAGSLRKRSSRYR 161
                 99****************************************************9 PP

>> BMC  BMC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.9   7.4e-25   2.7e-21       1      74 []       8      83 ..       8      83 .. 0.96
   2 ?    0.8   0.0      0.14     5e+02      48      61 ..     118     131 ..     116     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 7.4e-25
                EEEEEEEESHHHHHHHHHHHHHHSSEEEEEEEECTTTCEEEEEEESHHHHHHHHHHHHHHH..CHHEEEEEEESSE CS
         BMC  1 AlGlietrglaaaieaaDaalKaAnVelvgvekvgggkvtviitGdvaaVkaAveagveaa..kgelvsshviprp 74
                AlGl+e+ g++aa+ aaDa+lKaAnV+l++ e   +g+ t++++Gd+aa++aA++ag++aa  +g+++s + i rp
  CTQ29266.1  8 ALGLLEVEGMVAAVDAADAMLKAANVRLLSHEVLDPGRLTLVVEGDLAACRAALDAGAAAArrTGCVISRREIGRP 83
                9************************************************************75599*999988876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHH CS
         BMC  48 aaVkaAveagveaa 61 
                 a+V++++ ag+ aa
  CTQ29266.1 118 ASVRQGMTAGEVAA 131
                 89999999999877 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3   4.5e+03      37      49 ..      10      22 ..       9      28 .. 0.74
   2 !   15.2   0.0     6e-06     0.022       2      49 ..     110     157 ..     109     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
                HHHHHHSSEEEE- CS
        FaeA 37 eqLekegkikrsp 49
                  Le eg++  + 
  CTQ29266.1 10 GLLEVEGMVAAVD 22
                5789999997665 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 6e-06
                 HHHHHHHHHH.S----HHHHHHHHTS-HHHHHHHHHHHHHHSSEEEE- CS
        FaeA   2 keeIleylnsikapckTreiAdalglsaYQaRyYLeqLekegkikrsp 49 
                 +e +l+ l s++ + +  e+A +++     aR  LeqL  +g +++  
  CTQ29266.1 110 SEALLTLLASVRQGMTAGEVAAHFAWPLDKARQALEQLFSAGSLRKRS 157
                 6889****************************************9865 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   7.7e-06     0.028       7      50 ..     112     155 ..     112     157 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.7e-06
                 HHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE. CS
    HTH_IclR   7 aiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveq 50 
                 a+L +la+ +q++t  e+A+++++p  +++  L  L   G +++
  CTQ29266.1 112 ALLTLLASVRQGMTAGEVAAHFAWPLDKARQALEQLFSAGSLRK 155
                 6899*********************9999999999988887775 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.6   5.7e+03      43      56 ..       9      22 ..       7      33 .. 0.62
   2 ?   11.9   0.0   4.5e-05      0.16      12      60 ..     111     161 ..     108     165 .] 0.91

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.6
                HHHHHHCTSEEEES CS
        TrmB 43 LrsLedkGlVerek 56
                L  Le  G+V  ++
  CTQ29266.1  9 LGLLEVEGMVAAVD 22
                45566677776655 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.5e-05
                 CHCHHHH..HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTTT CS
        TrmB  12 kvYlaLl..klgpatadeiaeelgvprskvYevLrsLedkGlVerekgrpk 60 
                 ++ l+Ll   ++ +ta e+a +   p  k+ ++L++L ++G  +++ +r++
  CTQ29266.1 111 EALLTLLasVRQGMTAGEVAAHFAWPLDKARQALEQLFSAGSLRKRSSRYR 161
                 7889999888999******************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1299.59
//
Query:       CTQ29267.1  [L=219]
Description: putative carboxysome-related structural protein with putative role in ethanolamine utilization [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-20   70.9   0.9      3e-11   43.1   0.4    2.3  2  BMC       BMC domain


Domain annotation for each model (and alignments):
>> BMC  BMC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.4   1.7e-15     3e-11       1      61 [.      36     107 ..      36     127 .. 0.94
   2 !   26.3   0.0   3.1e-10   5.6e-06      17      61 ..     162     208 ..     153     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 1.7e-15
                 EEEEEEEESHHHHHHHHHHHHHHSSEEEEEEEECTTT..........CEEEEEEE.SHHHHHHHHHHHHHHH CS
         BMC   1 AlGlietrglaaaieaaDaalKaAnVelvgvekvggg..........kvtviitG.dvaaVkaAveagveaa 61 
                 +lGli+ ++ +++++aaD+a+K A Ve+v+ ++ ++g          +v++++ G ++a+V+a+++a ++ +
  CTQ29267.1  36 SLGLITADSDDVTYIAADEATKQAMVEVVYGRSLYAGaahgpsptagEVLIMLGGpNPAEVRAGLDAMMAHI 107
                 79**********************************99****999999*******************99977 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 3.1e-10
                 HHHHHHHSSEEEEEEEECTTT..CEEEEEEESHHHHHHHHHHHHHHH CS
         BMC  17 aDaalKaAnVelvgvekvggg..kvtviitGdvaaVkaAveagveaa 61 
                 +Daa+K+A+V+lv++  + +   ++ +++tG+ aa+kaA +a  +a+
  CTQ29267.1 162 IDAAMKSADVQLVTYVPPPSEtnYSAAFLTGSQAACKAACNAFTDAV 208
                 7**************999996579******************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1785.49
//
Query:       CTQ29268.1  [L=299]
Description: ethanolamine ammonia-lyase, small subunit (light chain) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-79  265.1   0.0    5.8e-79  264.7   0.0    1.2  1  EutC      Ethanolamine ammonia-lyase light chain (EutC)
  ------ inclusion threshold ------
      0.068   13.2   0.0      0.094   12.7   0.0    1.1  1  TANGO2    Transport and Golgi organisation 2


Domain annotation for each model (and alignments):
>> EutC  Ethanolamine ammonia-lyase light chain (EutC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.7   0.0   6.4e-83   5.8e-79       3     232 ..      70     297 ..      68     298 .. 0.98

  Alignments for each domain:
  == domain 1  score: 264.7 bits;  conditional E-value: 6.4e-83
                 HHHHHHHH-SS--S---BTTB--HHHHHHHHHHHHHHHHHHH----HHHHHH.T-....EEEEBS--SHHHHTT-HHHHTSB-HHHHHHHHHHS-SS-S CS
        EutC   3 aweklreltpariglgragsslptkellafqlahaaArdAvhseldeealae.eleelglevksaakdreeyLrrPdlGrklseesleklkekaeeead 100
                  +++l+++t+ar++ grag++++t++ll+f ++h++++d+v++e+ e+ +++ +l    lev+s+++d++ yL+rPd+Gr+ls+e++++lk+++  ++d
  CTQ29268.1  70 VLTELKRSTAARVCTGRAGPRPRTQALLRFLADHSRSKDTVLKEVPEAWVKAqGL----LEVRSEISDKNLYLTRPDMGRRLSPEAIDALKAQCVMDPD 164
                 5689***********************************************9888....9*************************************** PP

                 EEEEEE-TT-HHHHHTTHHHHHHHHHHHHHTTTS-B---EEEET--TTHHHHHHHHHT-SEEEEEEE----SS----EEEEEEES--T.T--GGGSEEE CS
        EutC 101 vaivvaDGLsaeAveenaaelleallealkeaglsvapvvlveqgRValgdeigellgakvvvvliGERPGLssadslgvYltyapkv.gltdaernci 198
                 v++vv+DGLs++A+++n +e+l+ ll++lk+agl+v+++++v++gRV+++d+ige+lgakvv++l+GERPGL +++sl++Y +y+p+v  + +a+r+ci
  CTQ29268.1 165 VQVVVSDGLSTDAITANYEEILPPLLAGLKQAGLKVGTPFFVRYGRVKIEDQIGEILGAKVVILLVGERPGLGQSESLSCYAVYSPRVaTTVEADRTCI 263
                 ***************************************************************************************835679****** PP

                 EEESTTSB-HHHHHHHHHHHHHHHHHHT--GGGS CS
        EutC 199 SnirkeGlsyeeAaaklaellkealklklsGveL 232
                 Sni+++G+++ eAaa +++l+k++l++k+sG+++
  CTQ29268.1 264 SNIHQGGTPPVEAAAVIVDLAKRMLEQKASGINM 297
                 *******************************986 PP

>> TANGO2  Transport and Golgi organisation 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     1e-05     0.094      44     111 ..      47     116 ..      31     146 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1e-05
      TANGO2  44 sgrDlerkegGTWlGitkegrlAvLtNlreps..ekekkakkarsRGelvldfLtsseksseeyleelak 111
                 +++Dl + e   W+G+++  r  vLt+l+ ++  + ++ +++ r R +  l+fL ++++s++++l+e+ +
  CTQ29268.1  47 CALDLGSAEAKAWIGVQHPHRAEVLTELKRSTaaRVCTGRAGPRPRTQALLRFLADHSRSKDTVLKEVPE 116
                 56899999999****************988884444458899************9889999888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2345.92
//
Query:       CTQ29269.1  [L=453]
Description: ethanolamine ammonia-lyase, large subunit, heavy chain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.4e-204  679.1   0.1   2.7e-204  679.0   0.1    1.0  1  EutB      Ethanolamine ammonia lyase large subunit (EutB)


Domain annotation for each model (and alignments):
>> EutB  Ethanolamine ammonia lyase large subunit (EutB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  679.0   0.1  1.5e-208  2.7e-204       1     434 [.      12     444 ..      12     445 .. 1.00

  Alignments for each domain:
  == domain 1  score: 679.0 bits;  conditional E-value: 1.5e-208
        EutB   1 yefkdlkevlakaneeksGDelagvaAeseeervaAklvLadlklkdlleeplvpyeeDevtrlildsvdeaafakikdltvgelreflLseeaseeel 99 
                 y+fkd+kevlakane +sGD lagvaAes+++rvaAk+vL+d++++d++++p++pyeeD vtrli+d+v+e+a+++ik++t+++lre++L++e +++++
  CTQ29269.1  12 YQFKDVKEVLAKANELRSGDVLAGVAAESSQQRVAAKQVLSDMTVADIRNNPVIPYEEDCVTRLIQDDVNETAYQRIKHWTISDLREYVLNDEVTSDDI 110
                 9************************************************************************************************** PP

        EutB 100 kalakgltsemvaavsklmsnqdLiavakkievvtkfrttiGlkgtlsaRlqPnhptDdvegiaasvldgllygvGDaviGinPasdsvesvarllell 198
                 + ++kgltse+vaav+k++sn+dLi+ +kk+ v++k++ttiGl+gt+s+RlqPn++ Ddv+ iaa++++gl++g+GDaviG+nP++d+ve+++r+l+++
  CTQ29269.1 111 AFVRKGLTSEVVAAVAKICSNADLIYGGKKMPVIKKANTTIGLPGTFSCRLQPNDTRDDVQSIAAQIYEGLSFGAGDAVIGVNPVTDDVENLSRVLDTV 209
                 *************************************************************************************************** PP

        EutB 199 keviekfeiptqscvLaHvttqleaiekgapvdlvFqsiaGtekanksFgvslelleeaaeaalslkrgvgenvlYfEtGqGselsadahhgvDqvtlE 297
                   vi+kf+iptq cvLaHvttq+eai++gap +l+Fqsi+G+ek+ k+Fgv+l++l+ea+++ ++ +r +gen+lYfEtGqGs+lsa+a++g+Dqvt+E
  CTQ29269.1 210 YGVIDKFNIPTQGCVLAHVTTQIEAIRRGAPGGLIFQSICGSEKGLKEFGVELAMLDEARAVGAEFNRIAGENCLYFETGQGSALSAGANFGADQVTME 308
                 *************************************************************************************************** PP

        EutB 298 aRaYglarkfkpllvntvvGFiGPEylydgkqiiRagLEDhfmgkLlGlpmGvdvcytnHaeadqddldnlltllaaagvnylmgvpgadDvmLnYqst 396
                 aR+Yglar+++p+lvntvvGFiGPEyly+++qiiRagLEDhfmgkL G++mG+d+cytnHa+adq+  +nl+ lla+ag+ny+mg+p +dD+mLnYq+t
  CTQ29269.1 309 ARNYGLARHYDPFLVNTVVGFIGPEYLYNDRQIIRAGLEDHFMGKLSGISMGCDCCYTNHADADQNLNENLMILLATAGCNYIMGMPLGDDIMLNYQTT 407
                 *************************************************************************************************** PP

        EutB 397 sfhdalalrellglkpapefeawleklgildeegklte 434
                 +fhd++++r+llgl+p+pefe+wle++gi+ ++g+lt+
  CTQ29269.1 408 AFHDTATVRQLLGLRPSPEFERWLETMGIM-ANGRLTK 444
                 ******************************.9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3297.76
//
Query:       CTQ29270.1  [L=467]
Description: reactivating factor for ethanolamine ammonia lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.8e-174  580.5   0.0   3.2e-174  580.3   0.0    1.0  1  EutA      Ethanolamine utilisation protein EutA
    3.9e-05   24.0   0.1      0.079   13.4   0.0    2.4  2  FtsA      Cell division protein FtsA
  ------ inclusion threshold ------
      0.014   14.3   1.4      0.037   12.8   0.3    2.1  2  MreB_Mbl  MreB/Mbl protein
      0.028   13.8   0.0      0.049   13.1   0.0    1.3  1  Ppx-GppA  Ppx/GppA phosphatase family


Domain annotation for each model (and alignments):
>> EutA  Ethanolamine utilisation protein EutA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  580.3   0.0  7.2e-178  3.2e-174       2     474 ..       5     465 ..       4     466 .. 0.98

  Alignments for each domain:
  == domain 1  score: 580.3 bits;  conditional E-value: 7.2e-178
        EutA   2 ellsvGiDiGtsttqlvfsklllenvasvsqvprieivekevlyrseiiftPlleeeeidaekikeiieeeykkAgiakedidtGAviitGEtarkenA 100
                 +llsvGiDiGt+ttq++fs+l l+n+a+vsqvpr+e++++++ ++s+++ftP++++ e+++++++++i ++y++Agia++ +d+GA+iitGE+a+++nA
  CTQ29270.1   5 QLLSVGIDIGTTTTQVIFSRLELVNRAAVSQVPRYEFIKRDISWQSPVFFTPVDKKGELKEAELEALILAQYRAAGIAPQAVDSGAIIITGESAKTRNA 103
                 79************************************************************************************************* PP

        EutA 101 revletlsgkaGdFvvatAGPdlEsiiagkGagaaalskekstrvlniDiGGGtsnlalfkeGevidtacldvGGrlikidkdtkkityispklkkiie 199
                 r ++++ls+++GdFvva+AGP+lEs+iag+Gaga++ls+++++rvlniDiGGGtsn+alf++G+v++tacl+vGGrl+++d+ ++++++++p+ ++i++
  CTQ29270.1 104 RPAVMALSQSLGDFVVASAGPHLESVIAGHGAGAQTLSRQRMCRVLNIDIGGGTSNYALFDAGNVSATACLNVGGRLLETDA-QGRVVHAHPPGQRIVD 201
                 *********************************************************************************9.9*************** PP

        EutA 200 elglelevgeklekeelkkiveemaellvevvglkkeselaelllttkslkekkeievvtlsGGvadliyeeeeskdefkygDiGilLakalkesellk 298
                  l+ + ++  +l++ +l +++++ma+l+vev++++  s+la+ l++t+ l++ ++ ev+tlsGGv+++++++ +  d+f+++DiG+lLa+al+e+++l+
  CTQ29270.1 202 ALFGAGTNVLALTAGQLAQVARRMAALIVEVIEGT-LSPLAQGLMQTEVLPAGVQPEVITLSGGVGECYRHQPA--DPFCFSDIGPLLATALHEHPRLR 297
                 ***********************************.********************************998877..7********************** PP

        EutA 299 klkvlkpaetirAtvvGAgahtlelsGstitlekdllPlknlPvlklskedeeaaeeelaeavkeklawfkleeekqkvalalegekelsfkavqelak 397
                 +++v+ pa+t+rAtv+GAgahtl+lsGsti+le   lPl+nlPv  +++ +      +l +a+ ++l++++l+ e ++++lal+++ +++++++ ++++
  CTQ29270.1 298 EMNVQFPAQTVRATVIGAGAHTLSLSGSTIWLEGVPLPLRNLPVAIPQDAA------DLPNAWLQALTQLDLAPEADAYVLALPASLPVRYATLLTVID 390
                 ********************************************9998774......599*************************************** PP

        EutA 398 alveglkelvekelplivvveedlakvlGqtlaallekkkeliciDevkvenGDyiDiGkplleGkvvPvvvKtLvf 474
                 al+ +++++ + + pl++v+e+d++k+lG+ l+++l+ + +l++iDev+++ GDyiDiG+pl++G+vvPv+vK+L+f
  CTQ29270.1 391 ALLAFVARFPNPR-PLLLVAEQDFGKALGMLLRPQLP-HLPLAVIDEVSIRAGDYIDIGTPLFGGSVVPVTVKSLAF 465
                 ********99976.**********************9.9*************************************9 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0006       2.7       1      38 [.       9      47 ..       9      99 .. 0.85
   2 !   13.4   0.0   1.8e-05     0.079       3      37 ..     151     185 ..     149     250 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0006
                EEEEE-SSSEEEEEEETTEEEEEEEES-.-HHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvhlrvigv.ggngitkdia 38
                +++DiG+++t+v+  + + +   +v +v + + i++di+
  CTQ29270.1  9 VGIDIGTTTTQVIFSRLELVNRAAVSQVpRYEFIKRDIS 47
                69**********999987666677777766677777764 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.8e-05
                 EEE-SSSEEEEEEETTEEEEEEEES--HHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA   3 vDiGagktdvavaedgalvhlrvigvggngitkdi 37 
                 +DiG+g+++ a+++ g++ +++ ++vgg+ +  d+
  CTQ29270.1 151 IDIGGGTSNYALFDAGNVSATACLNVGGRLLETDA 185
                 9***************************9999884 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0     0.099   4.4e+02       4      18 ..       9      23 ..       7      35 .. 0.69
   2 ?   12.8   0.3   8.3e-06     0.037      76     182 ..      71     183 ..      52     193 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.099
                EEEEE-SSEEEEEET CS
    MreB_Mbl  4 lgiDLGtantlvyvk 18
                +giD+Gt++t v  +
  CTQ29270.1  9 VGIDIGTTTTQVIFS 23
                678888888777544 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 8.3e-06
                 HHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEE...HHHHHHHHTT--TTSSS...-EEEEEE-SS-EEEEEEETTEEE CS
    MreB_Mbl  76 ellkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllie...eplaAAiGaglpveeps...gnmvvdiGggttevavislggiv 168
                  +l ++       +++ +  ++i+  s  t   r Av+  ++++G   v       e+++A  Gag +    +     + +diGggt++ a+  +g++ 
  CTQ29270.1  71 LILAQYRAAGIAPQAVDSGAIIITGESAKTRNARPAVMALSQSLGDFVVASAGphlESVIAGHGAGAQTLSRQrmcRVLNIDIGGGTSNYALFDAGNVS 169
                 555555555555666777788888888888889999999999999877766433338899999999886544411134669****************** PP

                 EEEEES-SHHHHHH CS
    MreB_Mbl 169 tsksvrvaGdelde 182
                  +  + v+G  l+ 
  CTQ29270.1 170 ATACLNVGGRLLET 183
                 *********87765 PP

>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.1e-05     0.049     112     173 ..     146     211 ..     131     235 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
                 SSEEEEEEETTEEEEEEEETTEEEEEEEES--CCHHHH....HHSGCCC--HHHHHHHHHHHHHHC CS
    Ppx-GppA 112 grglviDiGGGStElvlgeekevsklvSlplGavrlte....rfltddpltkeeveaarkavekel 173
                  r+l+iDiGGG   ++l +  +vs+   l++G   l +    r+++  p+++++v+a++ a  ++l
  CTQ29270.1 146 CRVLNIDIGGGTSNYALFDAGNVSATACLNVGGRLLETdaqgRVVHAHPPGQRIVDALFGAGTNVL 211
                 689*****************************7666543333578888999999999988766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3469.83
//
Query:       CTQ29271.1  [L=410]
Description: putative ethanolamine transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.6e-140  467.1  44.3   4.1e-140  466.9  44.3    1.0  1  EutH      Ethanolamine utilisation protein, EutH


Domain annotation for each model (and alignments):
>> EutH  Ethanolamine utilisation protein, EutH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  466.9  44.3  2.3e-144  4.1e-140       1     351 []       3     391 ..       3     391 .. 0.99

  Alignments for each domain:
  == domain 1  score: 466.9 bits;  conditional E-value: 2.3e-144
        EutH   1 ineiilyimlifaviGaidki.............lgnkl.glgeeFeeGleamGslalsmvGiialapvlakvlepiivplykllgaDpamfattlLAv 85 
                 ineii+yim++f++i+a+d+i             lg+++ g g +FeeG++amG+l l+mvG++alapvla++l p+i+ply++lga+p+mfa+tlLA+
  CTQ29271.1   3 INEIIMYIMMFFMLIAAVDRIlsqfggsarflgkLGKSIeGSGGQFEEGFMAMGALGLAMVGMTALAPVLAHLLGPVIIPLYEMLGANPSMFAGTLLAC 101
                 89********************************9999989********************************************************** PP

        EutH  86 DmGGyqlakelak.dkeaglfsglilgsmlGativFtiPvalgiiekedrkylakGvlaGiitiPigllvgglvag............lslalvlvnli 171
                 DmGG+ lakela  d +a+++sglilgsm+G+tivF+iPvalgiie  dr+ la GvlaGi+tiPig+++gglva             +++al+l+n+i
  CTQ29271.1 102 DMGGFFLAKELAGgDVAAWMYSGLILGSMMGPTIVFSIPVALGIIEPTDRRWLALGVLAGIVTIPIGCIAGGLVAMysgveingqpvaFTFALILMNMI 200
                 ************979999********************************************************6667799999*************** PP

        EutH 172 pviilavllalgLifipekmikgfkvfgkvivalitigLalaivealtgiklipglapi...........eealeivgsiaivlaGafplvalitkvlk 259
                 pvii+avl+algL+fipekmi+gf++f+k++valitigLa+a+++ l+g++lipgl+pi           ++a+e++gsi++vl+Ga+p+v l+t++++
  CTQ29271.1 201 PVIIVAVLVALGLKFIPEKMINGFQIFAKFLVALITIGLAAAVIKFLLGWELIPGLDPIfmapgdqpgevMRAIEVIGSISCVLLGAYPMVLLLTRWFE 299
                 *************************************************************************************************** PP

        EutH 260 kpleklgkklginevaaaGllaslannipmfallkdmdergkvinvAfavsaafvlGdhLgFtaavepemilplivgKlvgGilavllalll 351
                 kpl+++g+ l++n+ aa G++a+lannipmf ++k+md+rgkvin+Af+vsaaf+lGdhLgF aa+ ++mi+p+ivgKlvgG++a+ +a+ll
  CTQ29271.1 300 KPLMRVGNLLKVNNMAAGGMVATLANNIPMFGMMKQMDTRGKVINCAFSVSAAFALGDHLGFAAANMNAMIFPMIVGKLVGGVTAIGVAMLL 391
                 *****************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2872.38
//
Query:       CTQ29272.1  [L=38]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       150  (0.00836633); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.26s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 290.79
//
Query:       CTQ29273.1  [L=395]
Description: putative alcohol dehydrogenase in ethanolamine utilization; ethanolaminosome [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-112  375.5  11.1   2.6e-112  375.3  11.1    1.0  1  Fe-ADH    Iron-containing alcohol dehydrogenase
    6.1e-18   65.4   4.4    9.6e-09   35.3   0.0    2.3  2  Fe-ADH_2  Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.3  11.1  2.9e-116  2.6e-112       1     364 []      27     387 ..      27     387 .. 0.96

  Alignments for each domain:
  == domain 1  score: 375.3 bits;  conditional E-value: 2.9e-116
                 -SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHH CS
      Fe-ADH   1 PtrivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKa 99 
                 P+ +++g gal+  g  +++ g+++ ++++d+++  ++g+ + +++sl+ +gi++t++    ++p++++v +a+a++r++++d+v+a+GGGsv+D+AKa
  CTQ29273.1  27 PPVTLHGVGALAACGPQAQSRGLRHLFVMVDSFLH-QAGMTAGLERSLAMKGIAMTLWPCPAGEPCVTDVCAAVAQLRDARCDGVVAFGGGSVLDAAKA 124
                 556789*****************9999999*9966.*************************************************************** PP

                 HHHHTT....................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHH CS
      Fe-ADH 100 ialllanpe..vedylgegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEay 196
                 +all+anpe  + ++  ++ +  +++lplia+PTtaGtGse+t++ vi d  +g+k ++++ +l+Pd+ai+D +lt ++P+++ta tg+Dal+ha+Eay
  CTQ29273.1 125 VALLVANPEqtLGEM--TEHSELRPRLPLIAVPTTAGTGSETTNVTVIIDAVSGRKQVLAHASLMPDVAILDAALTEGVPPHITAMTGIDALTHAVEAY 221
                 ******984333333..455668899************************************************************************* PP

                 HHHT---TTSSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH..........HHH CS
      Fe-ADH 197 vskkanplsdalaleairliaknleravadgedleareqmllastlaglafsnaglgavHalahalgalfgiphglanaillpavlrfnaeaaperlaq 295
                  +++a+p++d la+ ai +i ++l++av  g+dl+are+mllas++ag+afs+aglg++Ha+ah+ ga ++iphglana+llp v++fn+  +++r+ q
  CTQ29273.1 222 SARHATPFTDSLAMGAIAMIGEALPKAVGCGQDLAARENMLLASCMAGMAFSSAGLGLCHAMAHQPGAALHIPHGLANAMLLPTVMEFNRMVRRARFSQ 320
                 ********************************************************************99*********************9******* PP

                 HHHT.......T--HHHHHHHHHHHHHTT---SHHHHT-TT-HHHHHHHHHT-TSGGGGSSS---HHHH CS
      Fe-ADH 296 laralggesdeeaaeeliealrellkelglptsLselgvdeedldklaeaalkdrslannpreltaedv 364
                 + ral+g+  ++  +e+i+a+rel++e+gl ++L e g +++++ ++a+aa +d +l++npr +++e++
  CTQ29273.1 321 IGRALTGK--KTDDREAIAAVRELIAEVGLTMRLTEAGATSAHYAAWAQAAQEDICLRTNPRTASREQI 387
                 ****9887..778999*************************9***********************9986 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.1e-12   9.6e-09       5      97 ..      35     128 ..      32     132 .. 0.92
   2 !   26.4   5.7   5.7e-10   5.1e-06      99     246 ..     148     296 ..     142     298 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.1e-12
    Fe-ADH_2   5 galeklgellkelelkkvllvadentkka.agekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsak 97 
                 gal   g   ++++l+++++++d+   +a ++  +e+sl+ +gi ++++   ++e+ +++v + v++lr +++d vva GgG+++D+ak v+  
  CTQ29273.1  35 GALAACGPQAQSRGLRHLFVMVDSFLHQAgMTAGLERSLAMKGIAMTLWPCPAGEPCVTDVCAAVAQLRDARCDGVVAFGGGSVLDAAKAVALL 128
                 777888888899999**********988878999*********************************************************975 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 5.7e-10
    Fe-ADH_2  99 nvpyvsvpTaaSvDGfaspgaslvvd..gkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaamvqeaae 194
                 ++p+++vpT+a   + +  +  ++    g+k+ + +   +P   i+D  + +  P +++a    D+l   +  +  + a+ ++++la  ++am+ ea+ 
  CTQ29273.1 148 RLPLIAVPTTAGTGSETTNVTVIIDAvsGRKQVLaHASLMPDVAILDAALTEGVPPHITAMTGIDALTHAVEAYSARHATPFTDSLAMGAIAMIGEALP 246
                 789********99998888888876677999999777789*******************98888*********************************** PP

    Fe-ADH_2 195 klvedkketealeellealalsgigisrpaSGsEHliSHaldmlalkqalHG 246
                 k+v  +++  a e++l a+ ++g+++s+++ G +H ++H   ++   +  HG
  CTQ29273.1 247 KAVGCGQDLAARENMLLASCMAGMAFSSAGLGLCHAMAHQPGAAL--HIPHG 296
                 ***************************************877766..66666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3001.22
//
Query:       CTQ29274.1  [L=281]
Description: putative chaperonin, ethanolamine utilization protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-08   33.1   0.1    1.3e-07   32.0   0.0    1.6  2  FtsA      Cell division protein FtsA
    1.9e-07   30.2   0.0    8.6e-05   21.5   0.0    2.9  3  MreB_Mbl  MreB/Mbl protein
    5.7e-06   25.6   0.0    9.2e-06   24.9   0.0    1.3  1  PilM_2    Type IV pilus assembly protein PilM;
     0.0015   17.5   0.1     0.0021   17.0   0.1    1.3  1  EutA      Ethanolamine utilisation protein EutA
     0.0085   14.3   1.0     0.0098   14.1   0.1    1.5  2  HSP70     Hsp70 protein
  ------ inclusion threshold ------
      0.012   14.7   0.1      0.019   14.0   0.1    1.3  1  DDR       Diol dehydratase reactivase ATPase-like domain
       0.09   12.2   0.1       0.12   11.8   0.1    1.1  1  Ppx-GppA  Ppx/GppA phosphatase family


Domain annotation for each model (and alignments):
>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1         3   7.7e+03       2      17 ..      36      51 ..      35      65 .. 0.70
   2 !   32.0   0.0   5.1e-11   1.3e-07       2      86 ..     144     248 ..     143     277 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3
                EEEE-SSSEEEEEEET CS
                xxxxxxxxxxxxxxxx RF
        FtsA  2 lvDiGagktdvavaed 17
                ++D+G+  +  +v+++
  CTQ29274.1 36 GIDLGTCDVVSMVVDR 51
                7999997766555543 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 5.1e-11
                 EEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHHHHHHHT--HHHHHHHHHHH--S--............EEEEEHHHHH................GG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxx................xx RF
        FtsA   2 lvDiGagktdvavaedgalvhlrvigvggngitkdiakalrtaveeAerikikyGsala............ekeigrkels................gg 72 
                 +vDiG+g+t +a++++g++++++   +gg++i+  +a   ++ +eeAe+ k++++  +                                       g+
  CTQ29274.1 144 VVDIGGGTTGIAIVKQGRVTYSADEATGGHHISLTLAGNRGIGLEEAEQYKRSHAGEIWpvvkpvyekmaeI--------VarhiagqgivdlwlagGA 234
                 7**************************************************765444335877665553220........1344446666688888888 PP

                 GGSTTHHHHHHHHH CS
                 xxxxxxxxxxxxxx RF
        FtsA  73 salpnleelaeral 86 
                  + p++ el+++ +
  CTQ29274.1 235 CMQPGVHELFRQRF 248
                 88888888888886 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.069   1.8e+02       4      19 ..      35      50 ..      33      55 .. 0.83
   2 !   21.5   0.0   3.4e-08   8.6e-05      63     180 ..      66     175 ..      61     181 .. 0.88
   3 !    4.0   0.0    0.0072        18     251     307 ..     199     259 ..     179     270 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.069
                EEEEE-SSEEEEEETT CS
    MreB_Mbl  4 lgiDLGtantlvyvkg 19
                lgiDLGt+ ++  v +
  CTQ29274.1 35 LGIDLGTCDVVSMVVD 50
                79******99876655 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 3.4e-08
                 EETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEE CS
    MreB_Mbl  63 lkdGviadlevaeellkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevav 161
                 ++dG++ d+  a +l+++ +  ++++  ++ ++   ++P g +    r  +++ ++aG +  ++++ep a A     ++ +     vvdiGggtt +a+
  CTQ29274.1  66 VRDGIVWDFFGAVTLVRRHLATLEQQLGCRFTHAATSFPPGTDP---RISINVLESAGLEISHVLDEPTAVA-----DLLQLDNAGVVDIGGGTTGIAI 156
                 68999999999999999999999999999999999999998765...777889999************9876.....5555666679************ PP

                 EETTEEEEEEEES-SHHHH CS
    MreB_Mbl 162 islggivtsksvrvaGdel 180
                 +  g +++s    ++G ++
  CTQ29274.1 157 VKQGRVTYSADEATGGHHI 175
                 *********9999999876 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0072
                 HHHHHHHHHHHHTS-HHHHHHHHHH-EE...EESGGGGSBTHHHHHHHHH.SS-EEE-SST CS
    MreB_Mbl 251 saiveavkevLektppeLaadivdrgiv...ltGGgallkgldkllseet.glpvkvaedp 307
                  +i   vk v ek++   a  i+ +giv   l+GG+ +  g+++l+++++  lpv++ +++
  CTQ29274.1 199 GEIWPVVKPVYEKMAEIVARHIAGQGIVdlwLAGGACMQPGVHELFRQRFpALPVHLPQHS 259
                 577888999999999999999*****977779***************99846888887665 PP

>> PilM_2  Type IV pilus assembly protein PilM;
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   3.6e-09   9.2e-06     182     296 ..     142     246 ..     121     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 3.6e-09
      PilM_2 182 vaivdigasrttlsvlrdgkivYtreqafGgeqltqeivrrYglsleeaekkkrsgslPedyeeevlepflealaqeisralqffltssqqnkvdkilL 280
                   +vdig  +t ++++++g++ Y+ ++a Gg+++   ++ + g+ leeae+ krs+  +e +   v +p  e++a+ ++r +         + +  + L
  CTQ29274.1 142 AGVVDIGGGTTGIAIVKQGRVTYSADEATGGHHISLTLAGNRGIGLEEAEQYKRSHA-GEIW--PVVKPVYEKMAEIVARHIA-------GQGIVDLWL 230
                 579**************************************************9985.5555..5889999999999998884.......345666777 PP

      PilM_2 281 aGGtaslpgleellee 296
                 aGG  + pg++el  +
  CTQ29274.1 231 AGGACMQPGVHELFRQ 246
                 7777777777776665 PP

>> EutA  Ethanolamine utilisation protein EutA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   8.4e-07    0.0021     148     181 ..     145     178 ..     133     224 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.4e-07
        EutA 148 iDiGGGtsnlalfkeGevidtacldvGGrlikid 181
                 +DiGGGt+ +a++k+G+v+ +a    GG  i + 
  CTQ29274.1 145 VDIGGGTTGIAIVKQGRVTYSADEATGGHHISLT 178
                 8***************************999875 PP

>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.62   1.6e+03       2      18 ..      35      51 ..      35      57 .. 0.73
   2 !   14.1   0.1   3.8e-06    0.0098     157     207 ..     117     161 ..      86     179 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.62
                EEEEEXSSEEEEEEEET CS
       HSP70  2 iGiDLGttnsvvavmeg 18
                +GiDLGt   v  v++ 
  CTQ29274.1 35 LGIDLGTCDVVSMVVDR 51
                69*****9877666654 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 3.8e-06
                 HHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSSXEEEEEEEEET CS
       HSP70 157 kiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGggtfdvSilelek 207
                 + AGL++  ++ epTA+a    ld++       v+D+Gggt+ + i++ ++
  CTQ29274.1 117 ESAGLEISHVLDEPTAVADLLQLDNAG------VVDIGGGTTGIAIVKQGR 161
                 569***************888888887......9************87554 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   7.5e-06     0.019     136     191 ..     143     197 ..     138     207 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.5e-06
         DDR 136 ailDlGaGstDaalieeegevkavhlAGAGemvtlliaseLgledrelaEdiKkyp 191
                  ++D+G+G+t  a++++ + + +   A  G  ++l +a + g+   e aE+ K+  
  CTQ29274.1 143 GVVDIGGGTTGIAIVKQGRVTYSADEATGGHHISLTLAGNRGI-GLEEAEQYKRSH 197
                 59***************99999***************999999.789999999976 PP

>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   4.8e-05      0.12     116     184 ..     144     212 ..     131     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.8e-05
                 EEEEETTEEEEEEEETTEEEEEEEES--CCHHHHHHSGCCC--HHHHHHHHHHHHHHCTTTHHHHCCCE CS
    Ppx-GppA 116 viDiGGGStElvlgeekevsklvSlplGavrlterfltddpltkeeveaarkavekeleevkdevkkeg 184
                 v+DiGGG t ++++++  v+ +     G   +  +   ++ ++ ee e ++++ + e+ +v++ v ++ 
  CTQ29274.1 144 VVDIGGGTTGIAIVKQGRVTYSADEATGGHHISLTLAGNRGIGLEEAEQYKRSHAGEIWPVVKPVYEKM 212
                 89************9999999999999999999999999999999999999998888888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2015.95
//
Query:       CTQ29275.1  [L=467]
Description: putative aldehyde dehydrogenase, ethanolamine utilization protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-32  110.9  13.7    3.1e-31  108.4  13.7    1.8  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
        1.8    8.9   5.6       0.65   10.3   0.3    2.6  3  CMV_1a    Cucumber mosaic virus 1a protein family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4  13.7   3.5e-35   3.1e-31      29     427 ..      34     422 ..      18     432 .. 0.83

  Alignments for each domain:
  == domain 1  score: 108.4 bits;  conditional E-value: 3.5e-35
                 HHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEECTTEEEEEEEEE- CS
      Aldedh  29 edvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyaelaeklegevlpssegklalvrrePl 127
                 + +d+avaaA  a+++ ++  ++ R++++++++++ e+ + elael ++etG    e +   ++ +  +r +   +e l+ +vl+ + + l+l+ + P 
  CTQ29275.1  34 ASLDDAVAAATVAQQGLKR--VAMRQQVIQAIREAGEKYARELAELAVTETGMGRVEDKF--AKNVAQARGTP-GVECLTPQVLTGD-NGLTLIENAPW 126
                 5789***********8887..67899**************************77666554..22233333332.3567899998885.999******** PP

                 SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT....TS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHHHHHHH CS
      Aldedh 128 GvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea....glPkgvlnvvtgsgsevgealvehpevdkvsftGstevgrkia 222
                 Gvv+++tP   P+++++ +++  +aaGN+vv+ P + +  ++ + + l+++a    g P+++l  v  ++ ++++ l + p++ ++  tG+ +v +   
  CTQ29275.1 127 GVVASVTPSTNPAATVINNAISLIAAGNSVVFAPHPAAKKVSQRAITLLNQAvvaaGGPANLLVTVANPDIDTAQRLFKYPGIGLLVVTGGEAVVEAAR 225
                 *********************************99988887766555555544444***********************************99998888 PP

                 HHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS-TTSTT-SB---SSHHHHHHHH CS
      Aldedh 223 kaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgdpldedtdvGPliseaqlekve 321
                 k+ +   kr+++   G+ p++v e aDl +a++aivkga + +  +C   + l+v +s++de++  l e  +++k+  +  ++ ++ Pl  ++  e+ +
  CTQ29275.1 226 KHTN---KRLIAAGAGNPPVVVDETADLPRAAQAIVKGASFDNNIICADEKVLIVVDSVADELMR-LMEGQQAVKLTAA--QAEQLQPLLLKNIDERGK 318
                 8766...9******************************************************985.6666677877666..567888999999999988 PP

                 HHHHHH.HHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEE..SEEEEE-SBHHHHHHHHHHS- CS
      Aldedh 322 kyveea.keegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyG..Laagvftkdleraervaerle 417
                 + v++  + + a  +     +  gl+  +  +  ++ +++ +++ a +E+  PVl+v+++ ++eeai++a + e G   +a+ +++++++++++a++++
  CTQ29275.1 319 GTVSRDwVGRDAGKIA----AAIGLQVPA-QTRLLFVETPASHPFAVTELMMPVLPVVRVANVEEAIALAVQLEGGchHTAAMHSRNIDNMNQMANAID 412
                 8887642222222222....122333333.344678889************************************944579****************** PP

                 SSEEEESSSS CS
      Aldedh 418 aGnvyiNdst 427
                 +     N ++
  CTQ29275.1 413 TSIFVKNGPC 422
                 9998888765 PP

>> CMV_1a  Cucumber mosaic virus 1a protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   7.2e-05      0.65      59     117 ..      38      95 ..      29     113 .. 0.88
   2 ?   -0.1   0.1      0.12     1e+03      64     108 ..     139     181 ..     116     201 .. 0.79
   3 ?   -2.0   0.1      0.45     4e+03      61      92 ..     244     274 ..     239     308 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.2e-05
      CMV_1a  59 dvvaeaadvlkntllkvaikasldkkilaaeekkeektttttvlasavsevderPetsv 117
                 d va  a v ++ l +va++  + + i+ a ek +   +  +v+   ++ v+++ +  v
  CTQ29275.1  38 DAVAA-ATVAQQGLKRVAMRQQVIQAIREAGEKYARELAELAVTETGMGRVEDKFAKNV 95 
                 55665.55*****************************9**************9987766 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.12
      CMV_1a  64 aadvlkntllkvaikasldkkilaaeekkeektttttvlasavse 108
                 aa v++n++  +a   s+     +a  k  ++  + t+l +av  
  CTQ29275.1 139 AATVINNAISLIAAGNSVVFAPHPAAKKVSQR--AITLLNQAVVA 181
                 88899999999999999999999999999999..77788888754 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.45
      CMV_1a  61 vaeaadvlkntllkvaikasldkkilaaeekk 92 
                 v e+ad+ + +   +   as d++i  a+ek 
  CTQ29275.1 244 VDETADLPRAA-QAIVKGASFDNNIICADEKV 274
                 55666544443.34445677888888888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3268.63
//
Query:       CTQ29276.1  [L=95]
Description: putative carboxysome-like ethanolaminosome structural protein, ethanolamine utilization protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-28   99.0   0.2      2e-28   98.8   0.2    1.0  1  EutN_CcmL  Ethanolamine utilisation protein EutN/carboxysome


Domain annotation for each model (and alignments):
>> EutN_CcmL  Ethanolamine utilisation protein EutN/carboxysome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.2   1.1e-32     2e-28       1      83 []       1      83 [.       1      83 [. 1.00

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 1.1e-32
                -EEEEEEEEEEESEE-GGGTTSEEEEEEEE-TTS-EEEEEEEEEESS---TT-EEEEEEGGGGGGSTT-TTSS-SEEEEEEES CS
   EutN_CcmL  1 MklakVigsvvstrkdeslkgkkLlvvqpldaegepkgeeiVavDtvgAgvGelVlvveGssarkaageknapvDaaivGiiD 83
                Mkla V+g vv+t ++e+l + kLl+v+ l+a+gep+g+ +Va+D++gAg Ge+Vl+v+Gssar+a+ +  +pvD++++Gi+D
  CTQ29276.1  1 MKLAVVTGYVVCTVRHEGLAHDKLLMVEMLNARGEPDGQCAVAIDSIGAGCGEWVLLVSGSSARQAHAHGASPVDLCVIGIVD 83
                9*********************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 702.10
//
Query:       CTQ29277.1  [L=96]
Description: putative carboxysome-like ethanolaminosome structural protein, ethanolamine utilization protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-27   95.7   6.2    1.5e-27   95.4   6.2    1.1  1  BMC       BMC domain


Domain annotation for each model (and alignments):
>> BMC  BMC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   6.2   8.4e-32   1.5e-27       1      74 []       3      78 ..       3      78 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 8.4e-32
                EEEEEEEESHHHHHHHHHHHHHHSSEEEEEEEECTTTCEEEEEEESHHHHHHHHHHHHHHH..CHHEEEEEEESSE CS
         BMC  1 AlGlietrglaaaieaaDaalKaAnVelvgvekvgggkvtviitGdvaaVkaAveagveaa..kgelvsshviprp 74
                AlG+ietrgl+a iea Da++KaA+V+lvgv+++ggg+vt++++Gdvaa+kaA +ag++aa  +gelvs hviprp
  CTQ29277.1  3 ALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLVTAMVRGDVAACKAATDAGAAAAqrIGELVSVHVIPRP 78
                9************************************************************855***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 734.80
//
Query:       CTQ29278.1  [L=340]
Description: putative phosphotransacetylase subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.8e-114  381.3   0.0   4.4e-114  381.1   0.0    1.0  1  PTA_PTB   Phosphate acetyl/butaryl transferase
  ------ inclusion threshold ------
       0.34   10.9   3.5       0.71    9.9   0.3    2.3  2  SPDY      Domain of unknown function (DUF317)


Domain annotation for each model (and alignments):
>> PTA_PTB  Phosphate acetyl/butaryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.1   0.0  4.9e-118  4.4e-114       2     318 ..       4     321 ..       3     322 .. 0.97

  Alignments for each domain:
  == domain 1  score: 381.1 bits;  conditional E-value: 4.9e-118
                 HHHHHHHHHCTS--EEEES-TTSHHHHHHHHHHHHTTSSEEEEES-HHHHHHHHHHCTB--TT-EEE-TTT-CCH.HHHHHHHHHHCCCC.S-HCCHHH CS
     PTA_PTB   2 flerivekakkekkrivlpegedervlkAakelleegiadviLigdeaeikakaleldldlsgieivdpetsekl.eeyadelyelrkrkgvtieeare 99 
                 +++++ + a ++++r+v+p++ d rvlkAa+ l+++g+a++iL++++   ++ al+ +l l g++++dp+++ ++ e++a  + ++ + k   +++a +
  CTQ29278.1   4 IIDQCRKLALRAPARVVFPDALDVRVLKAAHYLQQQGLAHPILVASPFALRQFALGERLPLTGVQVIDPHSNLAMrEAFAAAWQARAGDK--APADAVD 100
                 789999*******************************************************************99455556666666666..9999999 PP

                 HTTSHHHHHHHHHHTTSSSEEEE-TTS-HHHHHHHHHHCT-B-TT----EEEEEEEET..TEEEEEESSSS-SS--HHHHHHHHHHHHHHHHHCCSS-- CS
     PTA_PTB 100 vvrdatyfaamlvklgeaDglvsGavnttadtlrpalqiiktkpgvklvSsvfimlle..drlllfaDcavnvnPtaeelaeialesaktakalgeeep 196
                 ++ d+++faa +v+ g+a+++++G+ ++ta +lr+ l++i+ +pg+k++Ss+f+ml +  ++ l faDc+v+++Pta +la+ia+ sa+t++a+  e p
  CTQ29278.1 101 KLADPLMFAAAMVSAGQAEVCIAGNLSSTASVLRAGLRLIGLQPGCKTLSSLFLMLPQyaGQPLGFADCSVVPQPTAAQLADIAIASAETWQAIAGEAP 199
                 **********************************************************9999************************************* PP

                 EEEEE-SSSTTSS-SHHHHHHHHHHHHHHHH-TTSEEEEEE-HHHHH-HHHHHHH-TTSTTTT--SEEE-SSHHHHHHHHHHHHHCCTEEEEEEEEESB CS
     PTA_PTB 197 rvAlLSyStkgsakgesvekvrealkivkekapdlvvdGelqlDaAlseevaekkapesevaGkAnvlvfPdLeagnigykivqrlakaeaiGPilqGl 295
                 rvA+LS+St gsa +++v +v++a++iv+++ap+l+vdGelq+DaA++++va++kap s+++G+AnvlvfP+Leagnigyki+qrl++++aiGP++qGl
  CTQ29278.1 200 RVAMLSFSTHGSAPHPCVANVQQATEIVRQRAPQLMVDGELQFDAAFVPDVAAHKAPGSPLQGRANVLVFPSLEAGNIGYKIAQRLGGYRAIGPLIQGL 298
                 *************************************************************************************************** PP

                 SS-EEE--TT--HHHHHHHHHHH CS
     PTA_PTB 296 akPvndlSrgasvedivnvaait 318
                 a+P +dlSrg+sve+i+++a+++
  CTQ29278.1 299 AAPLHDLSRGCSVEEIIELALVA 321
                 ******************99886 PP

>> SPDY  Domain of unknown function (DUF317)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   7.9e-05      0.71      31      56 ..      81     106 ..      75     110 .. 0.85
   2 ?    1.2   0.2      0.04   3.6e+02      20      53 ..     188     221 ..     168     226 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 7.9e-05
        SPDY  31 adgpaWhatFtaatPaelvaaftaaL 56 
                 a  +aW+a++++ +Pa++v  +++ L
  CTQ29278.1  81 AFAAAWQARAGDKAPADAVDKLADPL 106
                 67799**************9998866 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.04
        SPDY  20 paaWtiearpaadgpaWhatFtaatPaelvaaft 53 
                  ++W++ a++a   ++ + + ++ +P++ va++ 
  CTQ29278.1 188 AETWQAIAGEAPRVAMLSFSTHGSAPHPCVANVQ 221
                 7899999999999998888888889999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2686.65
//
Query:       CTQ29279.1  [L=268]
Description: putative cobalamin adenosyltransferase in ethanolamine utilization [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-12   47.0   0.1    4.6e-12   46.4   0.1    1.2  1  Cob_adeno_trans  Cobalamin adenosyltransferase


Domain annotation for each model (and alignments):
>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.1   2.6e-16   4.6e-12      11     161 ..      95     245 ..      91     247 .. 0.81

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 2.6e-16
                      XXXXXX.XXXTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--HHHHHH.HHHHHHHHH.HHS CS
  Cob_adeno_trans  11 TslvggervsKddprveayGtvDelnsaiglarallaeeeeelkeaLeeiqneLfdlgaelatpekkkekkkiteeevee.lekeidele.ael 102
                      T+l   + v+K+dpr+ + + +D+  ++   ++  l   +e ++ +L++i ++L +++ + a +    e   + +++++   e+++++l+ + l
       CTQ29279.1  95 THLTADTLVAKNDPRLAFRAVLDSTIALTVWLQIEL---AEPWQPWLTDIRSRLGNIMRADALE----E--PLAAQSIAGfSEAQLHRLShQPL 179
                      899999************************999555...5789***************998865....2..23333344446777777775556 PP

                      --EE.SEEES-S..SHHHHHHHHHHHHHHHHHHHHHHHHHHS.....HHHHHHHHHHHHHHHHHHH CS
  Cob_adeno_trans 103 pplk.sfilpgg..spaaaalhvaRtvcRraERavvelaeee....veeevlkylNRLSDlLfvla 161
                        l  ++++p+   ++ +a l+++R  +R+aE  +++++ +      +++++++lNRLS+  +v++
       CTQ29279.1 180 RYLGhDHLVPEArhGRDVALLNLLRGKVREAEVTAAQVFITPqfavRRADIMQALNRLSSAVYVMM 245
                      655425888886558899*****************99988667885579***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2030.12
//
Query:       CTQ29280.1  [L=229]
Description: conserved hypothetical protein involved in degradation of ethanolamine [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-66  222.6   0.0    2.4e-66  222.2   0.0    1.2  1  EutQ            Ethanolamine utilisation protein EutQ
      8e-08   31.9   0.0    1.9e-07   30.7   0.0    1.6  1  Cupin_3         Protein of unknown function (DUF861)
    7.5e-06   25.6   0.0    1.7e-05   24.4   0.0    1.5  1  Cupin_2         Cupin domain
     0.0069   16.1   0.1      0.024   14.3   0.0    1.8  2  AraC_binding_2  AraC-binding-like domain
     0.0075   16.2   0.0      0.015   15.2   0.0    1.4  1  AraC_binding    AraC-like ligand binding domain
  ------ inclusion threshold ------
      0.043   13.5   0.0      0.091   12.5   0.0    1.5  1  Cupin_6         Cupin


Domain annotation for each model (and alignments):
>> EutQ  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.2   0.0   8.2e-70   2.4e-66       1     152 []      81     228 ..      81     228 .. 0.99

  Alignments for each domain:
  == domain 1  score: 222.2 bits;  conditional E-value: 8.2e-70
        EutQ   1 lskelleqlvrkvikeklglekaeqsesfkkkvdksGilsvklidvkvkkedrldtgnPkdvvltkdlvtleeskrlgaGlmemkettfdwtlnydeid 99 
                 ++++l++ql++kv+kek++le++++++ f +++   G++++k+id++++k++r+d+++P++v+lt dlvt +++++++aG+m++++++f+wtlnydeid
  CTQ29280.1  81 FTESLVAQLMEKVMKEKQSLEQEAMQPGFDSVT---GKGGIKVIDGSSVKFGRFDGAQPHCVGLT-DLVTDQDGSSMAAGFMQWENAFFPWTLNYDEID 175
                 689****************************99...*****************************.********************************* PP

        EutQ 100 yvieGrldvlidGrkvvaeaGdviliPkgskiefsvtdeakflyvayPadwqs 152
                 +v+eG+l+v+++G ++va+aGdv++iPkgs+ief+++++++flyva+Pa+wqs
  CTQ29280.1 176 MVLEGELHVRHQGETLVAKAGDVMFIPKGSSIEFGTPSTVRFLYVAWPANWQS 228
                 ***************************************************97 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   6.4e-11   1.9e-07       9      63 ..     155     208 ..     147     219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 6.4e-11
                 EEEEEEECEEEEECESSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTEEEC CS
     Cupin_3   9 wgiwectpGkfrltyeedEfcyileGevkvtpeggetvelraGDlvvlpkglsgt 63 
                 +g ++ +   f++t  +dE+  +leGe +v++ +get   +aGD++++pkg+s +
  CTQ29280.1 155 AGFMQWENAFFPWTLNYDEIDMVLEGELHVRH-QGETLVAKAGDVMFIPKGSSIE 208
                 56677777789*********************.******************9765 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   5.8e-09   1.7e-05      20      68 ..     172     218 ..     169     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 5.8e-09
                 EEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEE CS
     Cupin_2  20 deffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparll 68 
                 de+ +VleGe++++  ge+ + +aGd++++p+g   +f+ ++   +r+l
  CTQ29280.1 172 DEIDMVLEGELHVRHQGETLVAKAGDVMFIPKGSSIEFGTPS--TVRFL 218
                 57779****************************988888777..55555 PP

>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.51   1.5e+03     126     146 ..      73      93 ..      22     111 .. 0.60
   2 !   14.3   0.0     8e-06     0.024      60     108 ..     176     224 ..     172     229 .] 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.51
  AraC_binding_2 126 dldsgagalwrrllrslvael 146
                      ++ + g+    l+++l++ +
      CTQ29280.1  73 LAQLPEGQFTESLVAQLMEKV 93 
                     334444444445555555555 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 8e-06
  AraC_binding_2  60 lplsGraeveqggrevvlgpgdavvldpgrpyrlrwsadceqlvlripr 108
                     + l+G+ +v++ g+++v+ +gd++++  g   ++ ++ +++ l + +p+
      CTQ29280.1 176 MVLEGELHVRHQGETLVAKAGDVMFIPKGSSIEFGTPSTVRFLYVAWPA 224
                     89********************************************995 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.9e-06     0.015      26      65 ..     174     213 ..     158     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.9e-06
                   EEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-T CS
  AraC_binding  26 ihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesds 65 
                   i  v+eG+  +r++g+t  +++Gd++++p+g   ++   s
    CTQ29280.1 174 IDMVLEGELHVRHQGETLVAKAGDVMFIPKGSSIEFGTPS 213
                   55799**************************998888777 PP

>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     3e-05     0.091      26      71 ..     167     207 ..     157     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
     Cupin_6  26 wslrfpaglalhvvlrGscwlidpasgepvrLsagdvvllpggeph 71 
                 w l  +   ++ +vl+G++++++++  e++  +agdv+++p+g++ 
  CTQ29280.1 167 WTLNYD---EIDMVLEGELHVRHQG--ETLVAKAGDVMFIPKGSSI 207
                 555554...55689********555..99**************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1789.89
//
Query:       CTQ29281.1  [L=159]
Description: putative nucleoside triphosphate hydrolase domain protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-28   97.0   0.0    9.2e-28   96.8   0.0    1.0  1  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
    2.3e-05   24.4   0.1    0.00015   21.8   0.1    2.1  1  MMR_HSR1     50S ribosome-binding GTPase
    3.5e-05   24.3   0.0    3.5e-05   24.3   0.0    1.2  1  ABC_tran     ABC transporter
    3.7e-05   23.7   0.0      0.011   15.6   0.1    2.4  2  RsgA_GTPase  RsgA GTPase
    0.00014   21.4   0.0       0.31   10.5   0.0    2.4  2  GTP_EFTU     Elongation factor Tu GTP binding domain
      0.001   19.0   0.6       0.12   12.2   0.1    2.1  2  dNK          Deoxynucleoside kinase
     0.0016   18.1   0.1     0.0095   15.5   0.0    1.9  2  cobW         CobW/HypB/UreG, nucleotide-binding domain
     0.0018   18.4   0.1       0.03   14.4   0.0    2.1  2  Dynamin_N    Dynamin family
      0.003   17.8   0.0     0.0051   17.1   0.0    1.4  1  AAA_28       AAA domain
     0.0063   16.1   0.3      0.014   14.9   0.3    1.9  1  FeoB_N       Ferrous iron transport protein B
     0.0076   16.8   0.0       0.01   16.3   0.0    1.3  1  AAA_23       AAA domain
       0.01   15.7   0.0      0.013   15.3   0.0    1.2  1  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
  ------ inclusion threshold ------
      0.029   14.6   0.0      0.043   14.1   0.0    1.4  1  AAA_22       AAA domain
      0.031   14.0   0.0      0.052   13.3   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
      0.068   12.6   0.0      0.099   12.1   0.0    1.3  1  SRPRB        Signal recognition particle receptor beta subuni
      0.086   13.4   0.0       0.11   13.0   0.0    1.4  1  AAA_18       AAA domain
       0.15   11.8   0.1        0.4   10.4   0.1    1.6  1  AAA_24       AAA domain
       0.18   11.2   0.0        1.4    8.4   0.0    2.2  3  Arf          ADP-ribosylation factor family
       0.19   11.5   0.0       0.82    9.4   0.0    1.9  3  ATP_bind_1   Conserved hypothetical ATP binding protein
       0.21   11.8   0.0       0.38   11.0   0.0    1.4  1  Roc          Ras of Complex, Roc, domain of DAPkinase
       0.23   10.7   0.0       0.33   10.2   0.0    1.2  1  Septin       Septin


Domain annotation for each model (and alignments):
>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   1.1e-30   9.2e-28       1     142 [.       1     143 [.       1     144 [. 0.95

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 1.1e-30
   PduV-EutP   1 mkkilliGkvgsGKttLtqalkgeelkYkktqaiefsdev.iDtPGeylenrklysalivtsaeadvialvqdateeesvfppgfasvf.nkeviGiit 97 
                 mk+i ++G+vg+GKttL +al+g+    +ktqa+ef+d+  iDtPGey  + ++y+ali+t  ++d +  v++a+++es +ppg+  +  +k++i  i 
  CTQ29281.1   1 MKRIAIVGAVGAGKTTLFNALQGNYSLARKTQALEFNDRGdIDTPGEYFSHPRWYHALITTLQDVDTLIYVHAANDTESRLPPGLLDIGsRKHLIVAIS 99 
                 9***********************9999**********988********************************************998616789999** PP

   PduV-EutP  98 kidlaedeenieaveelLksaGaeki.fevsavekegieellkyle 142
                 k+dl+  ++n+ av++lL  +G +   f ++ ++ + +  l +yl+
  CTQ29281.1 100 KTDLP--DANVAAVRQLLDGMGFQAPvFALNGCDPQSVAPLENYLS 143
                 *****..99**************9855**************99997 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   1.8e-07   0.00015       1      27 [.       3      29 ..       3     113 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.8e-07
                EEEEEESTTSSHHHHHHHHHTSTEEES CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltgekaivs 27
                ++aivG   +GK+tL+nal g+ + + 
  CTQ29281.1  3 RIAIVGAVGAGKTTLFNALQGNYSLAR 29
                69*****************99844332 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.1e-08   3.5e-05      12      41 ..       2      41 ..       1     149 [. 0.66

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4.1e-08
                SEEEEEESTTSSHHHHHHHHTTSS--..........SEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlkllagllkp..........teGe 41
                +++aivG  GaGK+tL+++l g+++           + G+
  CTQ29281.1  2 KRIAIVGAVGAGKTTLFNALQGNYSLarktqalefnDRGD 41
                689*********************9844333333333333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.3e-05     0.011     102     126 ..       4      28 ..       1      44 [. 0.78
   2 ?    6.0   0.0     0.011       9.8      46      99 ..      91     144 ..      50     148 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-05
                  EEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelk 126
                  +++vG  G+GK+tL nal+++ +l+
   CTQ29281.1   4 IAIVGAVGAGKTTLFNALQGNYSLA 28 
                  689*****************86543 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.011
                  T-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  46 giepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkd 99 
                  + +++++++K+Dl + + ++ ++  +   ++ +v++++  + ++++ l+++l++
   CTQ29281.1  91 RKHLIVAISKTDLPDANVAAVRQLLDGMGFQAPVFALNGCDPQSVAPLENYLSE 144
                  447899*******99888444444445555577899999999999999998875 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00036      0.31       5      25 ..       3      23 ..       1      41 [. 0.80
   2 !    9.0   0.0    0.0011      0.91      75     144 ..      42     113 ..      30     148 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00036
                EEEEEESTTSSHHHHHHHHHH CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLly 25
                 i+i+g v +GKtTL  +L  
  CTQ29281.1  3 RIAIVGAVGAGKTTLFNALQG 23
                699*************99964 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
                 EEESS....SGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHH CS
    GTP_EFTU  75 iDtPG....HvdFskevirglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeive 144
                 iDtPG    H  +    i++l+ +D  + v +a++        +l +    + ++iv+i K D ++a++  + +
  CTQ29281.1  42 IDTPGeyfsHPRWYHALITTLQDVDTLIYVHAANDTESRLPPGLLDI--GSRKHLIVAISKTDLPDANVAAVRQ 113
                 9***988888899***************9999996544444444433..3456699999999999998877665 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00014      0.12       1      22 [.       4      25 ..       4      42 .. 0.87
   2 ?    5.6   0.1     0.015        13     106     135 ..      48      77 ..      35      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
                EEEEESTTSSHHHHHHHHHCCS CS
         dNK  1 ivveGnIgaGKstlvklLskkl 22
                i++ G +gaGK+tl + L+ ++
  CTQ29281.1  4 IAIVGAVGAGKTTLFNALQGNY 25
                7899*************99776 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHCCH-SEEEEEE--HHH CS
         dNK 106 lkiykelldnlleelakpdlliYLkaslet 135
                 +     ++++l+ +l+ +d liY++a  +t
  CTQ29281.1  48 YFSHPRWYHALITTLQDVDTLIYVHAANDT 77 
                 5556689******************98776 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.1e-05    0.0095       3      41 ..       4      44 ..       2      64 .. 0.76
   2 ?    1.1   0.0      0.31   2.6e+02     112     165 ..      65     114 ..      42     125 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
                EEEEESTTCCHHHHHHHHH..CT--SS-EEEEESS-SSCHC CS
        cobW  3 tvltGflGsGKTtLlnhll..enraglklavivNefgevsi 41
                + ++G +G+GKTtL n+l      a +  a+  N+ g+++ 
  CTQ29281.1  4 IAIVGAVGAGKTTLFNALQgnYSLARKTQALEFNDRGDIDT 44
                5799*************997544455556666788877665 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.31
                 ECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC...HHHHHHH CS
        cobW 112 ldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldee.allekleer 165
                 +d++++v  a+   +e++  + +++ +  +  ++ ++KtDl d++ a   ++++ 
  CTQ29281.1  65 VDTLIYVHAAND--TESRLPPGLLDIGSRKHLIVAISKTDLPDANvA---AVRQL 114
                 555555555532..344444445555555555677999999988844...44444 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.5e-05      0.03       1      28 [.       4      31 ..       4      34 .. 0.89
   2 ?    1.7   0.0      0.27   2.3e+02     106     141 ..      42      77 ..      41      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.5e-05
                EEEEEBTTTTHHHHHHHHHTS--S---S CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgp 28
                ia+vG++ +GK+++ naL g   l r++
  CTQ29281.1  4 IAIVGAVGAGKTTLFNALQGNYSLARKT 31
                89*****************998887765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.27
                 EE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS- CS
   Dynamin_N 106 vDlPGldsvnkrdqelvkeyikkadiilavtsanhd 141
                 +D+PG   ++ r  + + +++++ d +++v +an  
  CTQ29281.1  42 IDTPGEYFSHPRWYHALITTLQDVDTLIYVHAANDT 77 
                 79999999999999999999************9986 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     6e-06    0.0051       1      21 [.       3      23 ..       3      39 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6e-06
      AAA_28  1 kivitGgestGKTtlleaLaa 21
                +i+i+G+ ++GKTtl +aL+ 
  CTQ29281.1  3 RIAIVGAVGAGKTTLFNALQG 23
                79*****************83 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   1.7e-05     0.014       2      24 ..       3      25 ..       2     140 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-05
                EEEEEESTTSSHHHHHHHHHTTS CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgak 24
                ++a+vG   +Gkttlfnal g +
  CTQ29281.1  3 RIAIVGAVGAGKTTLFNALQGNY 25
                69*****************9875 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.2e-05      0.01      23      40 ..       5      22 ..       3      67 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.2e-05
      AAA_23 23 lItGpNGaGKTTildAik 40
                +I+G  GaGKTT+++A++
  CTQ29281.1  5 AIVGAVGAGKTTLFNALQ 22
                7***************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-05     0.013       3      36 ..       5      43 ..       4      80 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
      AAA_21  3 vliGpNgsGKSnLLdaldllarl.....drdvegltdel 36
                +++G+ g+GK++L+ al++  +l     + ++++++d++
  CTQ29281.1  5 AIVGAVGAGKTTLFNALQGNYSLarktqALEFNDRGDID 43
                79***************9877767666644444444433 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.1e-05     0.043       8      35 ..       4      31 ..       2      95 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.1e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeaka 35
                ++++G +G+GKTtl + l+ ++  + k 
  CTQ29281.1  4 IAIVGAVGAGKTTLFNALQGNYSLARKT 31
                78***************99888654443 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     6e-05     0.052      25      43 ..       4      22 ..       1      39 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6e-05
      AAA_29 25 tlltGpsGsGKSTllDAiq 43
                + ++G+ G+GK+Tl+ A+q
  CTQ29281.1  4 IAIVGAVGAGKTTLFNALQ 22
                579*************997 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012     0.099       5      32 ..       3      32 ..       1      51 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
                EEEEE-STTSSHHHHHHHHHHS..S---B- CS
       SRPRB  5 avllvGlsdsGKTslftrLttd..svkktv 32
                ++ +vG   +GKT+lf+ L  +   ++kt+
  CTQ29281.1  3 RIAIVGAVGAGKTTLFNALQGNysLARKTQ 32
                789***************987654455554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00013      0.11       1      20 [.       4      23 ..       4      77 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00013
      AAA_18  1 IlltGtpGvGKttlakeLsk 20
                I++ G+ G+GKttl ++L+ 
  CTQ29281.1  4 IAIVGAVGAGKTTLFNALQG 23
                89***************953 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00047       0.4       3      22 ..       2      21 ..       1      77 [. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00047
      AAA_24  3 lkiliyGpsgiGKTtlakel 22
                ++i+i+G  g+GKTtl + l
  CTQ29281.1  2 KRIAIVGAVGAGKTTLFNAL 21
                69**************9988 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0016       1.4      16      37 ..       3      24 ..       1      38 [. 0.85
   2 ?   -2.8   0.0       4.4   3.8e+03      80      95 ..      63      78 ..      59      83 .. 0.75
   3 ?    0.1   0.0      0.57   4.9e+02     117     145 ..      93     120 ..      85     148 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0016
                EEEEEESTTSSHHHHHHHHHHS CS
         Arf 16 rilllGLDnaGKtTilkklkle 37
                ri ++G  +aGKtT+ + l+ +
  CTQ29281.1  3 RIAIVGAVGAGKTTLFNALQGN 24
                899***************9976 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.4
                TTESEEEEEEETT-CT CS
         Arf 80 ektdavifvvDsadre 95
                +++d++i+v  ++d+e
  CTQ29281.1 63 QDVDTLIYVHAANDTE 78
                6789999998777765 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.57
                 EEEEEEE-TTSTTSS-HHHHHHHTTGGGS CS
         Arf 117 allvlaNKqDlpealseeelrellgleel 145
                 +l+v   K Dlp+a   + +r+ll+    
  CTQ29281.1  93 HLIVAISKTDLPDAN-VAAVRQLLDGMGF 120
                 688889999999985.4556666655555 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00096      0.82       1      22 [.       6      27 ..       6      36 .. 0.81
   2 ?   -2.9   0.0       5.6   4.8e+03      96     120 ..      42      64 ..      42      82 .. 0.63
   3 ?   -1.0   0.0       1.4   1.2e+03     160     207 ..      95     114 ..      84     147 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00096
  ATP_bind_1  1 vvGpaGsGKttfvgalseilel 22
                +vG +G+GKtt+ +al+  ++l
  CTQ29281.1  6 IVGAVGAGKTTLFNALQGNYSL 27
                79************99866655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.6
  ATP_bind_1  96 fDtPGQielfthseslakiveeLes 120
                 +DtPG  e f h      ++ +L+ 
  CTQ29281.1  42 IDTPG--EYFSHPRWYHALITTLQD 64 
                 57777..666666666666666664 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.4
  ATP_bind_1 160 vvvlnkfDllkeklekeleffedvealslllekeeekykklaeaiael 207
                 +v+++k+Dl +                             + +a+++l
  CTQ29281.1  95 IVAISKTDLPD----------------------------ANVAAVRQL 114
                 55555555533............................233333333 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00044      0.38       1      24 [.       3      26 ..       3      44 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00044
                EEEEESSTTSSHHHHHHCHCT-CC CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedkf 24
                ++ +vG  g+GKt+l++ ++ +  
  CTQ29281.1  3 RIAIVGAVGAGKTTLFNALQGNYS 26
                589**************9986654 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00038      0.33       7      32 ..       4      29 ..       2      45 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00038
                EEEEEBTTSSCCCCCCTTSSSS---- CS
      Septin  7 lmvvGesglGkttlintlfetdliee 32
                + +vG+ g Gkttl+n+l  +    +
  CTQ29281.1  4 IAIVGAVGAGKTTLFNALQGNYSLAR 29
                679**************987654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 1312.93
//
Query:       CTQ29282.1  [L=111]
Description: putative carboxysome-like ethanolaminosome structural protein with putative role in ethanol utilization [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-11   43.3   0.1    3.6e-11   42.9   0.1    1.2  1  BMC              BMC domain
  ------ inclusion threshold ------
      0.074   12.5   0.1      0.085   12.3   0.1    1.1  1  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> BMC  BMC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.1   4.1e-15   3.6e-11       1      58 [.      40      94 ..      40     107 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 4.1e-15
                EEEEEEEESHHHHHHHHHHHHHHSSEEEEEEEECTTTCEEEEEEESHHHHHHHHHHHH CS
         BMC  1 AlGlietrglaaaieaaDaalKaAnVelvgvekvgggkvtviitGdvaaVkaAveagv 58
                A+G+++ +++++a++a D a+KaA+V++  +++++g    ++i G+v+aV++A+   +
  CTQ29282.1 40 AIGIMTLTPGETAMIAGDLAMKAADVHIGFLDRFSG---ALVIYGSVGAVEEALLQTI 94
                9***********************************...8*************86655 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   9.5e-06     0.085      73     125 ..      52     103 ..      27     107 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.5e-06
  Glyco_transf_21  73 kglaaaleaaflntlagvlqaklsglgfavGksmalrreaLeaiGGfealade 125
                      + +a++l+      + g+l++ +sg+  + G++ a+  + L+ iGG+  l  +
       CTQ29282.1  52 AMIAGDLAMKAADVHIGFLDR-FSGALVIYGSVGAVEEALLQTIGGLGRLLNY 103
                      4567778888889999*****.*************************887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 857.96
//
Query:       CTQ29283.1  [L=759]
Description: putative fused malic enzyme oxidoreductase; putative phosphotransacetylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.5e-101  339.9   0.0     2e-101  339.5   0.0    1.2  1  PTA_PTB         Phosphate acetyl/butaryl transferase
    6.6e-31  107.5   0.2    1.7e-28   99.7   0.2    2.5  1  malic           Malic enzyme, N-terminal domain
    5.7e-22   78.2   4.3    1.3e-21   77.1   1.1    2.7  2  Malic_M         Malic enzyme, NAD binding domain
     0.0032   17.2   0.4      0.011   15.5   0.4    1.9  1  ELFV_dehydrog   Glutamate/Leucine/Phenylalanine/Valine dehydr
  ------ inclusion threshold ------
      0.012   14.4   0.1      0.037   12.8   0.1    1.8  1  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
       0.19   12.2   0.0       0.44   11.0   0.0    1.6  1  Amidase_2       N-acetylmuramoyl-L-alanine amidase


Domain annotation for each model (and alignments):
>> PTA_PTB  Phosphate acetyl/butaryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.5   0.0  6.8e-105    2e-101       2     319 .]     430     751 ..     429     751 .. 0.98

  Alignments for each domain:
  == domain 1  score: 339.5 bits;  conditional E-value: 6.8e-105
                 HHHHHHHHHCTS--EEEES-TTSHHHHHHHHHHHHTTSSEEEEES..-HHHHHHHHHHCTB--TT.-EEE-TTT-CCHHHHHHHHHHHCCCC.S-HCCH CS
     PTA_PTB   2 flerivekakkekkrivlpegedervlkAakelleegiadviLig..deaeikakaleldldlsg.ieivdpetsekleeyadelyelrkrkgvtieea 97 
                 f+++i+++a+ke+kr+vl+ege+ rvl+A++el++ g+a++iL+g  +++e++ ++l+l++++++ +eiv++e++++ +ey+ e+y+l+kr+g+t e+a
  CTQ29283.1 430 FMKPIFSQARKEPKRVVLAEGEETRVLHATQELVSLGLAKPILVGrpSVIEMRIQKLGLQIKAGVdFEIVNNESDPRFKEYWSEYYQLMKRRGITQEQA 528
                 899******************************************999999999999******99********************************** PP

                 HHHTT.SHHHHHHHHHHTTSSSEEEE-TTS-HHHHHHHHHHCT-B-TT----EEEEEEEETTEEEEEESSSS-SS--HHHHHHHHHHHHHHHHHCCSS- CS
     PTA_PTB  98 revvr.datyfaamlvklgeaDglvsGavnttadtlrpalqiiktkpgvklvSsvfimlledrlllfaDcavnvnPtaeelaeialesaktakalgeee 195
                 ++ v  ++t+++a +v++geaD++++G +  + d+ r +  + + ++gv+++ +++ +ll+ ++++ aD++vn +P+ eelaei+l++a++++++g +e
  CTQ29283.1 529 QRAVIsNTTVIGAIMVHRGEADAMICGTIGEYHDHYRVVQPLFGYRDGVSTAGAMNALLLPSGNTFIADTYVNHDPSPEELAEITLMAAESVRRFG-IE 626
                 *99888******************************************************************************************.** PP

                 -EEEEE-SSSTTSS-SHHHHHHHHHHHHHHHH-TTSEEEEEE-HHHHH-HHHHHHH-TTSTTTT--SEEE-SSHHHHHHHHHHHHHCC.TEEEEEEEEE CS
     PTA_PTB 196 prvAlLSyStkgsakgesvekvrealkivkekapdlvvdGelqlDaAlseevaekkapesevaGkAnvlvfPdLeagnigykivqrla.kaeaiGPilq 293
                 prvAlLS+S++gsa+ +s+ k+r+ l++vk++ap+l++dGe++ DaAl+e++++ ++p+s+++G An+lv+P++ea++i+y +++  + +  ++GP+l+
  CTQ29283.1 627 PRVALLSHSNFGSADCPSASKMRTTLELVKARAPELMIDGEMHGDAALVESIRNDRMPDSPLKGAANILVMPNMEAARISYNLLRVSSsEGVTVGPVLM 725
                 ************************************************************************************976515679****** PP

                 SBSS-EEE--TT--HHHHHHHHHHHH CS
     PTA_PTB 294 GlakPvndlSrgasvedivnvaaita 319
                 G+akPv++l + asv++ivn++a+++
  CTQ29283.1 726 GVAKPVHILTPIASVRRIVNMVALAV 751
                 ***********************986 PP

>> malic  Malic enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.2   5.6e-32   1.7e-28       2     182 .]      19     151 ..      18     151 .. 0.98

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 5.6e-32
                 TTECCCCCCHHCCCHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS.SS..EEEEE-SSSBTTTBS-G.HHHHHHHHHHHHHH CS
       malic   2 eknetlfykllkekleellpivYtPtvgeacqeyseeyrkarglylsikdkekikeilknlpeedvkvivvtdgeriLGlGdlG.vagvgimvGKlaLy 99 
                 +k++++++k+l+++  ++l+++Y+P+v+++c e+++++  a+ +y+++++                 v+vv++g+++LGlG++G +ag+++m+GK +L+
  CTQ29283.1  19 GKIQVSPTKPLATQ--RDLALAYSPGVAAPCLEIEKDPLAAY-KYTARGNL----------------VAVVSNGTAVLGLGNIGaLAGKPVMEGKGVLF 98 
                 689999********..**************************.********................******************************** PP

                 HHHHS-EGGGEEEEEECS-BS.HHHHC.TT..S.SSB...SHHHHHHHHHHHHHHHHHHGCTSEEEE-S--CCHHHHHHHHHC CS
       malic 100 talagidPekvlpvvldvgtnneelledplYlGlrkkRvkgeeydefvdefveavkelfppkaliqfEDfkaknafeileryr 182
                 +++agid   v+++++d                             + d+f+++v++l+p++++i++ED+ka+++f+i++++r
  CTQ29283.1  99 KKFAGID---VFDIEVDEL---------------------------DPDKFINVVAALEPTFGGINLEDIKAPECFYIEQQLR 151
                 *******...********9...........................99********************************986 PP

>> Malic_M  Malic enzyme, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   1.1   4.3e-25   1.3e-21       3     230 ..     165     360 ..     163     366 .. 0.88
   2 ?   -2.6   0.1      0.86   2.6e+03     233     255 ..     731     753 ..     701     755 .. 0.84

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 4.3e-25
                 HHHHHHHHHHHHHHHHH-S-GGG--EEEEC-SHHHHHHHHHHHHHHHTTTS-HHHHHTTEEEEETTEE-BTT-.S---TTTGGGSBS--SS--S....S CS
     Malic_M   3 gTaavalagllaalkitgkklseqkivvlGaGsagiGiaeqivealvkeGlseeeakkkiylvDrkGLltedr.ekleeekkpfakkkeelkeakdklt 100
                 gTa+++ a++l++l++ +k+ls+ ++vv GaG+a+i  ++++v+  ++        k++i + D+kG++ +dr  +++e+k  +a +++  +      t
  CTQ29283.1 165 GTAIISTAAILNGLRVVEKNLSDVRMVVSGAGAAAIACMNLLVALGMQ--------KHNIVVCDSKGVIYKDRePNMAETKAAYAVEDDGKR------T 249
                 9**********************************9888877665444........4689************9789********99887655......9 PP

                 HHHHHHHH--SEEEE-SSSSS-S-HHHHHHHHHHSSS-EEEE--SSGGGSSS-HHHHHHHTTT-SEEEESS----EEETSEEE--EE--GGGTHHHHHH CS
     Malic_M 101 LeevvkkvkptvliGlsgvagafteeivremaksterPiilplSNPtskaEataedvlkwtdgkalvasGsPfkpvelngktyeigQaNNayifPglgl 199
                 L++v++   +++ +G+sg ++++t+e+v++ma+    P+il+l NP    E  +  + ++ +++a++ +G          +  +++Q NN++ fP +  
  CTQ29283.1 250 LDDVIDG--ADIFLGCSG-PKVLTQEMVKKMAR---APLILALANPEP--EILPPLAKQV-RDDAIICTG----------RSDYPNQVNNVLCFPFIFR 329
                 *****97..69******9.6899********97...6*********86..6666655555.556777776..........67799************** PP

                 HHHHTT-SS--HHHHHHHHHHHHTT--HHHH CS
     Malic_M 200 gvivarakritdemllaaaealaelvseeel 230
                 g++ ++a+ i++em laa +a+ael+++e+ 
  CTQ29283.1 330 GALDVGATAINEEMKLAAVHAIAELAHAEQS 360
                 *************************998876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.86
                 T-SS--GGGHHHHHHHHHHHHHH CS
     Malic_M 233 gsllPelseirevslkvavavak 255
                  ++l +++++r +   va+av++
  CTQ29283.1 731 VHILTPIASVRRIVNMVALAVVE 753
                 568899999*********99987 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   3.6e-06     0.011      26      83 ..     182     240 ..     160     290 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.6e-06
                    TTS-STTEEEEEE--SHHHHHHHHHHHHCT-E..EEEEEESSEEEEETTEE-HHHHHHHH CS
  ELFV_dehydrog  26 kldslegkrvaisGsGnvgsyaallltelgak..vvavsDssGviydpeGldieellelk 83 
                    +  +l++ r+++sG G  + ++++ll  lg++   + v Ds+Gviy++   +++e ++  
     CTQ29283.1 182 EK-NLSDVRMVVSGAGAAAIACMNLLVALGMQkhNIVVCDSKGVIYKDREPNMAETKAAY 240
                    33.59999*****************99998652267889*******99887777665554 PP

>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.2e-05     0.037     256     359 ..     171     273 ..     157     283 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
                     HHHHHHHHHHHHHHHTT-EEEEECSSHHHHHHHHHHHHHT-EEEEEEESSS-HHHHHHHHHHS.TT.SEEEES.CHHHHHHHHHHHT-SEEEE-C CS
  Oxidored_nitro 256 rarlldaladyheylagkrvaiygdpdrvvalarllkelGmevvaagtetahrddeerlkaeleegepeviddadleeleelikelkpdlllggs 350
                     +a++l  l+ + + l+  r+++ g +  ++a + ll  lGm+   +++ +++   +++ +++++e++    ++ d + + + + + ++d++lg s
      CTQ29283.1 171 TAAILNGLRVVEKNLSDVRMVVSGAGAAAIACMNLLVALGMQKHNIVVCDSKGVIYKDREPNMAETKAAYAVEDDGKRTLDDVID-GADIFLGCS 264
                     67899999999******************************99988888888888888888888884455555566555555554.689999999 PP

                     CHHHHHHHT CS
  Oxidored_nitro 351 keryiaekl 359
                       + + +++
      CTQ29283.1 265 GPKVLTQEM 273
                     888888887 PP

>> Amidase_2  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00015      0.44      36     124 ..     511     643 ..     492     645 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
                 S.S-SEEE-SSSSEEESS-TTCEESSSSSEHCHHGEEEEEESSTTE...................................................EE CS
   Amidase_2  36 sigyhylidkdGtiyqlvdengrawHagdkggNdnsigIElvgngd...................................................gk 83 
                 +++y  l+ + G i+q     ++a  a     N++ ig  +v++g+                                                    +
  CTQ29283.1 511 WSEYYQLMKRRG-ITQ-----EQAQRAV--ISNTTVIGAIMVHRGEadamicgtigeyhdhyrvvqplfgyrdgvstagamnalllpsgntfiadtyVN 601
                 433666777777.888.....7777776..67888888888888888888888888999999999999999999999999999999999999999999* PP

                 SCHHHHHHHHHHHHHHHHHHHHTEEEGGGEEEHHHH.TB-TT CS
   Amidase_2  84 eppteaqyealakLvaallkrygippdrrvvgHsdi.rktdP 124
                 ++p+++ ++ ++  +a+ ++r+gi+p+  +++Hs++ + ++P
  CTQ29283.1 602 HDPSPEELAEITLMAAESVRRFGIEPRVALLSHSNFgSADCP 643
                 **************************999****999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 5397.10
//
Query:       CTQ29284.1  [L=318]
Description: transaldolase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-99  333.5   0.0    1.2e-99  333.3   0.0    1.0  1  TAL_FSA   Transaldolase/Fructose-6-phosphate aldolase


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.3   0.0  6.5e-104   1.2e-99       1     285 [.      13     310 ..      13     312 .. 0.95

  Alignments for each domain:
  == domain 1  score: 333.3 bits;  conditional E-value: 6.5e-104
                 EEEE---HHHHHHHHHTT---EEE--HHHHHH..T...TS.-HHHHHHHHHHH............................H-S-EEEE-S-...-SHH CS
     TAL_FSA   1 lvlDtadrelikklleekgiqgvTtNPsliekaik...ykalydeaieeikkeg....kkvkeaydkLavedilealdllgadgrvslEVdarlsddte 92 
                 +v+D++d+e+i+++ +    +++TtNPsl++ka+    y+ l+d+ai+++kk+g     +v+ a+dkLav++++e+l+ +  +grvs+EVdarls++ e
  CTQ29284.1  13 VVADSGDIESIRHYHP----EDATTNPSLLLKAAGlasYSGLIDDAIAWAKKQGggreAQVTHACDKLAVNFGAEILKSI--PGRVSTEVDARLSFNRE 105
                 69**************....************999999*******************99*********************..***************** PP

                 HHHHHHHHHHTT-T.......TEEEEEESSHHHHHHHHHHHHTT--EEEEEE-SHHHHHHHHHHT-SEEEEBHHHHHTTT.............S-HHHH CS
     TAL_FSA  93 atieeArrlialye.....renvlIKiPateeGikAikeLkkeGinvnvTliFsleqalaaaeagasviSpFvgRiddll.kkleekdklkgkddgval 185
                 ++ie+Ar+l+aly+     ++++lIK+++t+eGi+A++ L+keGi++n+Tl+Fs++qa+a+aeag+++iSpFvgRi d++  ++  ++++ ++d+gv++
  CTQ29284.1 106 KSIEKARHLVALYQemgidKSRILIKLASTWEGIRAAEVLEKEGIHCNLTLLFSFAQARACAEAGVYLISPFVGRIYDWYqTRKPLEPYVVEEDPGVKS 204
                 ********************************************************************************66666669*********** PP

                 HHHHHHHHHHHT-S-EEEEBS--SHHHHHHHHT-SEEEE-HHHHHHHT--HHH.....................................HHHHHHHHH CS
     TAL_FSA 186 vkeiynyykklgysTkvmaasfrnveeveelagcdtvTippkllealakhgkt..sekleeeeiek....lleklfrlginedavaeelldegikkFak 278
                 v++iy+y+k+++y+T vm+asfr +e++++l+gcd++Ti+p ll++l+++ +   ++ +++++i      l+e++fr+++n+d +a+e+l+egi+ Fa 
  CTQ29284.1 205 VRNIYDYFKQHKYNTIVMGASFRRTEQILALVGCDRLTIAPPLLKELQASDTPvvRKLIPASQILPrpvpLSEAEFRWEHNQDPMAVEKLAEGIRLFAV 303
                 *************************************************988843344455666666899***************************** PP

                 HHHHHHH CS
     TAL_FSA 279 dleklla 285
                 d+ kl++
  CTQ29284.1 304 DQRKLED 310
                 ****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2509.25
//
Query:       CTQ29285.1  [L=664]
Description: transketolase 2, thiamin-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.1e-170  564.3   0.0     1e-169  563.8   0.0    1.2  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
    2.4e-47  160.9   0.1    6.4e-47  159.5   0.1    1.7  2  Transket_pyr     Transketolase, pyrimidine binding domain
    4.9e-19   68.4   0.0      1e-18   67.4   0.0    1.6  1  Transketolase_C  Transketolase, C-terminal domain
    6.7e-06   25.5   0.0      0.018   14.2   0.0    2.3  2  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
    0.00013   21.8   0.4      0.096   12.5   0.1    3.4  3  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
     0.0009   18.3   0.0     0.0016   17.4   0.0    1.3  1  E1_dh            Dehydrogenase E1 component
  ------ inclusion threshold ------
      0.028   13.9   0.0      0.049   13.1   0.0    1.3  1  XFP_C            XFP C-terminal domain


Domain annotation for each model (and alignments):
>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  563.8   0.0    4e-173    1e-169       2     334 .]       3     333 ..       2     333 .. 0.99

  Alignments for each domain:
  == domain 1  score: 563.8 bits;  conditional E-value: 4e-173
                      HHHHHHHHHHHHHHHHHHHT-S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-SS CS
  Transketolase_N   2 dkkavnaiRvLavDavekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrqlgskt 95 
                      +++++naiR+L++Dav+ka+sGhPGap+g+adiaevl++++lkhnP++p+w+dRDRf+LsnGhas+llYsllhLtGydl+l++lk+frql+skt
       CTQ29285.1   3 RRELANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFLKHNPQNPDWVDRDRFILSNGHASMLLYSLLHLTGYDLPLSELKQFRQLHSKT 96 
                      57899***************************************************************************************** PP

                      -SS--TTTSTT--S---STTHHHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTE CS
  Transketolase_N  96 pGhPelghtagvevttGPLGqGianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidG 189
                      pGhPe g+t+gve+ttGPLGqG+anavg+a+ae+tlaa++n+pg++i+dh+t+v++gDgclmeG+s+ea+slagtl+LgkLi +yD+n isidG
       CTQ29285.1  97 PGHPEHGYTPGVETTTGPLGQGLANAVGMAIAERTLAAQFNRPGHEIIDHHTWVFMGDGCLMEGISHEACSLAGTLGLGKLIGFYDHNGISIDG 190
                      ********************************************************************************************** PP

                      EGGGT--S-HHHHHHHTT-EEEEETTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTSTTTTTSGGGTSS---HHHHHHHHHHTTS-TT-TS CS
  Transketolase_N 190 eteisftedvakrfeaygWhvievedgedveaikaaieeakaekdkPsliklrtviGygspakagtedvhGapLgedevaalkkklGfdpeksf 283
                      +te +f++d+a+rf+ay+Whvi + dg+d +aik+ai+ea+a+kdkPsli +rt+iG+gsp+kag+e++hGa+Lge+eva ++++lG++ + +f
       CTQ29285.1 191 KTEGWFSDDTAERFRAYHWHVIGDIDGHDPQAIKQAITEAQAVKDKPSLIICRTIIGFGSPNKAGSEESHGAALGEKEVALARQQLGWK-YPPF 283
                      *****************************************************************************************.**** PP

                      ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT--- CS
  Transketolase_N 284 evpeevydaykekvaegakaeeeWeekfaaykkkapeeaaelerrlsgelP 334
                      e+p+e+y+ ++++ + g+kae++W+ekfaay++++pe+aael+rr++g lP
       CTQ29285.1 284 EIPKEIYAGWDARPR-GEKAEHAWNEKFAAYQQQFPELAAELTRRMNGALP 333
                      *************99.********************************998 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       3.7   9.4e+03      92     111 ..     223     242 ..     219     249 .. 0.46
   2 !  159.5   0.1   2.5e-50   6.4e-47       2     176 ..     353     523 ..     352     524 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3.7
                   GHHHHHCHHHHHT--EEEEE CS
  Transket_pyr  92 adqairsgeakgklkvgvvt 111
                   ++qai+  +a +  ++ +++
    CTQ29285.1 223 IKQAITEAQAVKDKPSLIIC 242
                   33444444444444444444 PP

  == domain 2  score: 159.5 bits;  conditional E-value: 2.5e-50
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT..TEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHHGGHHHH CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg..egrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqiyadqai 96 
                   kia rka+++al++++   pe+++++aD+a ++++ ++g+   ++  +g++i++g++E++++++a+G+al+g+ ++++  +F++F++    ya++a 
    CTQ29285.1 353 KIASRKASQNALNAYGPHLPELLGGSADLAPSNLTIWSGSTSIKEdpAGNYIHYGVREFGMTAVANGIALHGG-FIPYTSTFLMFVE----YARNAA 444
                   7999***********************************99988888*************************6.*************....****** PP

                   HCHHHHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  97 rsgeakgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                   r ++a++k++ + v+t+++ig+gedGp+hq++e++a+lrl+p+++++rP+d++et+ ++++ai+r+ ++P++l+l++++l 
    CTQ29285.1 445 R-MAALMKARQImVYTHDSIGLGEDGPTHQAVEQLASLRLTPNFSTWRPCDQVETAVAWQAAIARQ-SGPTALILSRQNLA 523
                   *.**********9***************************************************87.6***********96 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   3.9e-22     1e-18       9     124 .]     548     654 ..     539     654 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 3.9e-22
                      TSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSSEEEEEEE- CS
  Transketolase_C   9 gkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdgldapvkrvggp 102
                      ++d++l+a+Gs+ve  + Aae+L ++g++++Vv+l++++ +D ++ +      ++ v+  + + r+++++ +a+++++  + gl+++++ ++g+
       CTQ29285.1 548 KPDLILIATGSEVEITVLAAEKLLAKGVNVRVVSLPSTDVFDAQDEA-----WRESVLPSDVSARVAVEAGIADYWYK--YVGLKGKIVGMTGY 634
                      79********************************************9.....9*************************..************** PP

                      SSSSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C 103 dviepgsaeelekafgldaeki 124
                        +e+++ae+l  +fg+++++i
       CTQ29285.1 635 --GESAPAEQLFPFFGFTVDHI 654
                      ..99****************98 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   7.1e-06     0.018      19     176 ..       4     189 ..       2     202 .. 0.77
   2 !    9.2   0.0   0.00025      0.64     233     270 ..     203     241 ..     191     244 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.1e-06
  DXP_synthase_N  19 eelaeelrefliesvsk.tggHlasnLgvveLtlalhyvf.....dtp....kDklvwDvgHqa...YvhKiltgRkdkfktlrqkgGls....g 96 
                     +ela+ +r+  +++v+k ++gH ++ +g+ +++  l++ f     + p    +D+++   gH +   Y    ltg    +++l+q   l+    g
      CTQ29285.1   4 RELANAIRALSMDAVQKaNSGHPGAPMGMADIAEVLWNDFlkhnpQNPdwvdRDRFILSNGHASmllYSLLHLTGYDLPLSELKQFRQLHsktpG 98 
                     57999********9976379************9999998844322111233379********97555777779****999999999988622224 PP

  DXP_synthase_N  97 fpkrsEseyDafeagHsstsisaalGlavardlkge..........kkkvvaviGDgaltgGmafealnnigelk.kkllvilNdNemsis 176
                     +p++   +    ++g  +  ++ a+G+a+a+++             ++++   +GDg l  G+++ea   +g+l   kl+  +  N  si+
      CTQ29285.1  99 HPEHGYTPGVETTTGPLGQGLANAVGMAIAERTLAAqfnrpgheiiDHHTWVFMGDGCLMEGISHEACSLAGTLGlGKLIGFYDHNGISID 189
                     444444444567899999************77665436666766767999999*****************999862577778888888886 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00025
  DXP_synthase_N 233 lfeelgfkYlGpidGhdleelikvleevkkl.kgpvllh 270
                      f++   + +G idGhd +++ ++++e++++ ++p l+ 
      CTQ29285.1 203 RFRAYHWHVIGDIDGHDPQAIKQAITEAQAVkDKPSLII 241
                     58899999*********************9835688875 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   3.8e-05     0.096      23      62 ..     106     161 ..      89     168 .. 0.74
   2 ?    3.6   0.0      0.02        52     112     152 ..     199     241 ..     180     242 .. 0.85
   3 ?    1.4   0.0     0.099   2.5e+02     106     148 ..     329     369 ..     306     372 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.8e-05
                   C..ETTTS-TTTHHHHHHHHHHH............ST..TSEEEEEEEHHHHHHTG CS
  TPP_enzyme_C  23 t..sgglgtmGyglpaAiGakla............kp..drevvaivGDGgflmil 62 
                      ++++g +G gl+ A+G+++a            ++  d++ ++++GDG+++  +
    CTQ29285.1 106 PgvETTTGPLGQGLANAVGMAIAertlaaqfnrpgHEiiDHHTWVFMGDGCLMEGI 161
                   2446799***************4445556777554223569**********99765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.02
                   -HHHHHHHTTSEEE.EESSH.HHHHHHHHHHHH.CSSSEEEEE CS
  TPP_enzyme_C 112 dfaklaealGakga.rvekadveeleealkeal.ekkgpalie 152
                   d a+  +a+  +++  ++ +d++ +++a+ ea   k++p+li 
    CTQ29285.1 199 DTAERFRAYHWHVIgDIDGHDPQAIKQAITEAQaVKDKPSLII 241
                   677888999999888999**************98888999997 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.099
                   .BS----HHHHHHHTTSE.EEEESSH.HHHHHHHHHHHHCSSSE CS
  TPP_enzyme_C 106 kdlkpvdfaklaealGak.garvekadveeleealkealekkgp 148
                   ++  p dfa++a+ + ak  a  e+a     ++a + al+  gp
    CTQ29285.1 329 NGALPEDFAAIARDYVAKlQA--EPA-KIASRKASQNALNAYGP 369
                   246777*********666333..333.23345666666665555 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.3e-07    0.0016      96     219 ..     108     239 ..      83     244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.3e-07
                 BEEE-SSTTTHHHHHHHHHHHHH..........HHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--E.EEEEEEESEETTEEHHHH-S---GGG..T CS
       E1_dh  96 ilggngivgaqvplvaGialaak..........iegkkevailliGDgAanqGdvyealnlaalwklpv.ifvveNNkygisTeaekasaskeladrar 183
                 + ++ g++g     + G+a+a +           e  ++ + +++GDg   +G+ +ea  la + +l   i +   N++ i  ++ ++  s++ a+r r
  CTQ29285.1 108 VETTTGPLGQGLANAVGMAIAERtlaaqfnrpgHEIIDHHTWVFMGDGCLMEGISHEACSLAGTLGLGKlIGFYDHNGISIDGKT-EGWFSDDTAERFR 205
                 556667777775555577777778888888777777788899*************************77699*****99998765.5778888999999 PP

                 TTTS-EE.EEETTSHHHHHHHHHHHHHHHHTTT--EE CS
       E1_dh 184 gvgipgl.rVdgnDplavyeAvkfAaeraregkgpll 219
                 ++    +  +dg Dp a+++A  +A+      ++p+l
  CTQ29285.1 206 AYHWHVIgDIDGHDPQAIKQAITEAQAVK---DKPSL 239
                 *99988857*************9998643...34555 PP

>> XFP_C  XFP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.9e-05     0.049      29      70 ..     543     581 ..     533     602 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.9e-05
       XFP_C  29 tdegeepdvvlagiGdeptlEvlaAvellreelpelkvrvvn 70 
                 +d+g +pd++l++ G+e+ + vlaA +ll + +    vrvv 
  CTQ29285.1 543 KDAGGKPDLILIATGSEVEITVLAAEKLLAKGV---NVRVVS 581
                 57889************************9876...566664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.37
# Mc/sec: 5352.21
//
Query:       CTQ29286.1  [L=348]
Description: hypothetical protein CH1034_260055 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-98  329.1   0.0    3.9e-98  328.9   0.0    1.0  1  DUF1176   Protein of unknown function (DUF1176)


Domain annotation for each model (and alignments):
>> DUF1176  Protein of unknown function (DUF1176)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.9   0.0  2.2e-102   3.9e-98       1     328 []      25     348 .]      25     348 .] 0.96

  Alignments for each domain:
  == domain 1  score: 328.9 bits;  conditional E-value: 2.2e-102
     DUF1176   1 qksfkDWqvaCDNtrtCraagyaaedglapvsllltReAgadapvslrvdlaeeeee...kkagklellidgkdlgelkaaadkaea...tldaaqvqa 93 
                 q+ f+DW v+C+N+++C+ +++  ++gl   +++l+R+Aga +++slr++l+++ ++    ++ +++ll+dgk+l  +++  + +++   t+d+ +++a
  CTQ29286.1  25 QQRFNDWLVTCNNQNFCVTRNVGLHHGL---VMTLSRSAGAVTDASLRIELGGTGNPvatLAPIAPRLLLDGKPLSLTDKRWHIEDKlikTADSVTIDA 120
                 5789************************...**************************9999999***********766655555555677********* PP

     DUF1176  94 llaalkkaskielkaggkrvelSlaGlsAaLlkmDeaQgRvgtvtAlvkkGnkpesaVppapaapvikaaeasaapkrelseaelaallkallaakkss 192
                 +l++++++++++l++g ++  +Sl+Gl+AaL ++D++Q+Rvg++tA+v kG++p+ +Vppapa++++  ae++++p   l ++el++l++    +++ +
  CTQ29286.1 121 FLQQVQEGKALSLANGLQT--ISLQGLKAALFFIDDRQKRVGSETAWVGKGEEPPLSVPPAPALRAVASAETAQSP---LGREELNDLMD----YGNER 210
                 ******************9..9*****************************************************9...*********99....9**** PP

     DUF1176 193 leeeeceldspeeerseevtrLsdtkaLvslsCwrgAYNegyalwvvdrakpyeprlltls...a.dseeskedelvnadydpasgelsslaKgRGlGD 287
                 +++++c+ld+ ++e +  vt+L+d+k+L+++sC++gAYN+  ++w+v+r++py +r+++l+   + ++e+ +e el+na+yd++++el++l+KgRG GD
  CTQ29286.1 211 MTNSHCSLDPFRREIR--VTALTDDKVLLMTSCESGAYNTVWLAWLVSRQRPYVARQVRLTlpfQpPGEAPREIELINASYDDRRHELVTLDKGRGAGD 307
                 *************999..*******************************************99967999****************************** PP

     DUF1176 288 CgssasWvwdGkrFvlseeattgeCrgiaaggaWpllwvva 328
                 Cg++++W++dG+rF ls++a++++C+++++++aWp+lw+++
  CTQ29286.1 308 CGIQTRWRFDGQRFSLSRYAQQPTCDNWQGPDAWPTLWITR 348
                 **************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2989.23
//
Query:       CTQ29287.1  [L=198]
Description: putative NUDIX hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-10   39.7   0.1    5.7e-10   39.3   0.1    1.2  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.1   3.2e-14   5.7e-10       3     115 ..      45     163 ..      43     180 .. 0.73

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 3.2e-14
                 EEEEEEEEEETTSE.EEEEEES......SSSTTT..EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE CS
       NUDIX   3 rravgvvllnekge.vLlvrrs......kkpfpg..WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleev 92 
                 + ++ v+l+n++++ v+lvr++      +  ++g   e+++G ++ +++pe++ r E+ EEtG+e+ +++ l        ++ p g  +e++++f +e 
  CTQ29287.1  45 GNGATVLLYNRHKQtVVLVRQFrvatwvNGNHDGmlIETCAGLLD-NDEPEACIRKEAVEETGYEVGEVRKLF-----ELFMSPGG-VTEVVHFFIAEY 136
                 67899*******99******998777776666665447*******.778999************886665555.....23455566.788999999666 PP

                 CSGCSST....STTTEEEEEEEEHHHH CS
       NUDIX  93 egelepn....denevsevrwvpleel 115
                  + ++++     ++e  ev  +p+ ++
  CTQ29287.1 137 SDAQRTTsgggVDDEAIEVLELPFSQA 163
                 666666656676666666645777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1478.28
//
Query:       CTQ29288.1  [L=660]
Description: fused putative oxidoreductase: FeS binding subunit; NAD/FAD-binding subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-36  124.6   1.6    1.5e-36  124.6   1.6    5.1  5  Fer4_20        Dihydroprymidine dehydrogenase domain II, 4Fe-
    2.1e-26   92.8   0.1    2.1e-21   76.5   0.1    1.9  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.9e-12   47.1  39.4    1.6e-07   31.4   9.9    4.1  4  Fer4_9         4Fe-4S dicluster domain
    1.2e-10   41.8   0.6    0.00047   20.7   0.0    3.5  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    7.2e-10   38.9  13.9    7.2e-10   38.9  13.9    2.7  1  Fer4_11        4Fe-4S dicluster domain
    9.4e-09   34.9   0.1     0.0033   16.7   0.2    2.8  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.7e-08   34.5   0.0    5.3e-08   33.0   0.0    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    7.8e-08   32.8  54.6    0.00025   21.6  12.7    4.5  3  Fer4_7         4Fe-4S dicluster domain
    7.9e-08   32.1  48.2    5.8e-05   23.0   2.0    6.2  5  Fer4_6         4Fe-4S binding domain
    1.2e-06   28.0   1.8    1.2e-06   28.0   1.8    6.4  5  Fer4           4Fe-4S binding domain
    1.4e-06   27.8   0.3    6.7e-06   25.6   0.0    2.1  2  FAD_binding_3  FAD binding domain
    5.5e-06   25.1   0.0    4.7e-05   22.0   0.0    2.0  2  FMO-like       Flavin-binding monooxygenase-like
    6.2e-06   26.2  11.3    6.2e-06   26.2  11.3    4.8  4  Fer4_10        4Fe-4S dicluster domain
    3.8e-05   23.5  49.1     0.0015   18.5   1.9    6.0  5  Fer4_2         4Fe-4S binding domain
    7.6e-05   22.8  30.2      0.001   19.2  11.7    4.4  4  Fer4_21        4Fe-4S dicluster domain
    9.4e-05   21.8   0.1    0.00024   20.4   0.0    1.7  2  Thi4           Thi4 family
     0.0002   21.7   0.0       0.44   11.0   0.0    3.0  2  NAD_binding_7  Putative NAD(P)-binding
    0.00029   20.2   0.7       0.34   10.2   0.0    2.8  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
    0.00047   19.6   1.1    0.00069   19.1   0.0    1.8  2  FAD_oxidored   FAD dependent oxidoreductase
    0.00051   18.9   0.5    0.00084   18.1   0.1    1.6  2  HI0933_like    HI0933-like protein
    0.00056   20.0   0.0       0.47   10.5   0.0    2.7  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
    0.00087   19.6   3.5    0.00087   19.6   3.5    6.3  6  Fer4_4         4Fe-4S binding domain
     0.0019   17.6   0.0     0.0073   15.7   0.0    2.0  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
     0.0023   17.6   0.5      0.008   15.8   0.3    2.0  2  DAO            FAD dependent oxidoreductase
     0.0052   17.3   0.1        3.9    8.1   0.0    3.5  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
     0.0066   16.9   9.2     0.0066   16.9   9.2    4.5  3  Fer4_8         4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.011   16.3   0.0        1.9    9.0   0.0    2.7  2  XdhC_C         XdhC Rossmann domain
      0.012   15.6   0.5      0.052   13.5   0.2    2.2  1  NAD_binding_9  FAD-NAD(P)-binding
      0.013   14.7   0.3      0.048   12.7   0.1    2.1  2  FAD_binding_2  FAD binding domain
      0.014   16.4  37.7       0.85   10.6   3.9    6.1  5  Fer4_16        4Fe-4S double cluster binding domain
      0.034   13.4   1.2        1.5    8.0   0.0    2.8  3  Amino_oxidase  Flavin containing amine oxidoreductase
      0.052   12.7   0.0         10    5.2   0.0    2.3  2  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
       0.14   12.7  43.2      0.038   14.5   9.3    5.0  4  Fer4_17        4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   2.6      0.56     3e+02      72      94 ..       9      31 ..       2      40 .. 0.70
   2 !    7.4   4.1    0.0066       3.6      16      39 ..      48      71 ..      41      77 .. 0.84
   3 ?    1.1   2.3      0.61   3.3e+02      21      40 ..      84     101 ..      74     104 .. 0.81
   4 ?    3.6   2.6       0.1        56      17      59 ..     114     164 ..     102     178 .. 0.68
   5 !  124.6   1.6   2.7e-39   1.5e-36       1     112 [.     205     316 ..     205     317 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.56
                HHHS-GGGTGCCS-GGGTTB.-- CS
     Fer4_20 72 grvCpqeelCegaCvlekkgkep 94
                +r C   + Ce aCv+ +++++ 
  CTQ29288.1  9 SRKCIGCQACEVACVMAHNEEQH 31
                56677777888888887655444 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0066
                HHHHHHTT----TT-HHHHCSTT- CS
     Fer4_20 16 ealeeAsRClqCkkapcvkgCPve 39
                e +++A  C +C++apcv++CP +
  CTQ29288.1 48 EGQRNAITCRHCEDAPCVRSCPND 71
                56788999**************75 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.61
                 HTT----TT-HHHHCSTT-- CS
     Fer4_20  21 AsRClqCkkapcvkgCPvei 40 
                  ++C+ C  + c+ +CP  +
  CTQ29288.1  84 QEKCIGC--KSCMVACPFGV 101
                 579****..78******875 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.1
                 HHHHHTT----T....T-HHHHCSTT--....-HHHHHHHHHTT-HHHHHH CS
     Fer4_20  17 aleeAsRClqCk....kapcvkgCPvei....dipefikkiaegnleeaak 59 
                 +++ A++C  C+     + cv++CP++     d ++ i+  ++++l++a++
  CTQ29288.1 114 VKASAHKCDLCQgreaGPACVENCPAQAltlaDDETLITLAKQRRLRSACQ 164
                 567899*****75444567******98522224456666666666666665 PP

  == domain 5  score: 124.6 bits;  conditional E-value: 2.7e-39
                 HTTS-S-SB----HHHHHHHHTT----T.T-HHHHCSTT---HHHHHHHHHTT-HHHHHHHHHHH-S-HHHHHHHS-GGGTGCCS-GGGTTB.----HH CS
     Fer4_20   1 raknfkevalglteeealeeAsRClqCk.kapcvkgCPveidipefikkiaegnleeaakiiketnslpavcgrvCpqeelCegaCvlekkgkepvaig 98 
                 r+++f+e+++ +t ++a+++A+RCl+C  ++ c+++CP++++ip++i+ +++gn+++a+ + ++tn lp+++grvCpq++lCegaC+l+ +++ +v+ig
  CTQ29288.1 205 RKSHFEEIYQPFTPQQAQQQAARCLTCGeHSICEWTCPLHNHIPQWIELVKAGNIAAAVALSHQTNCLPEITGRVCPQDRLCEGACTLR-DESGAVTIG 302
                 5678***********************83556********************************************************7.5559***** PP

                 HHHHHHHHHHHHT- CS
     Fer4_20  99 klerfvadaareeg 112
                 ++er++ d+a ++g
  CTQ29288.1 303 NIERYISDQALASG 316
                 ********998765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   8.1e-08   4.4e-05     129     206 ..     306     401 ..     294     413 .. 0.69
   2 !   76.5   0.1   3.8e-24   2.1e-21       1     294 []     329     641 ..     329     641 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 8.1e-08
                  ECHHHHHHCCSS-T.........SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.........TTS-HHHHHHHHHHHHHTTEEEEESCEE CS
                  xxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 129 tldsaealklkllp.........krivvvGgGyiGvElAaalaklgkevtlveardrll.........raldkelsaaleealekeGvevklgtsv 206
                   + s++al + ++p         kr++++G+G+ G+ +A +l + g++ ++ ++ +++           +ldk+l a+ ++ + ++G+++ l+++v
   CTQ29288.1 306 RYISDQALASGWRPdlsqvkpsgKRVAIIGAGPAGLACADMLVRHGVQPVVFDRHPEIGglltfgipaFKLDKSLLARRRAIFSEMGIRFELNCEV 401
                  566777777777777777778888888888888888888888888887666777666655444444223456777777777777777777777777 PP

  == domain 2  score: 76.5 bits;  conditional E-value: 3.8e-24
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.......HHHHCHHHHCCCCHCCT.CEEEEESCEEEEETEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias.......evvkklnqgielllgee.vvkidpgkkkvklekk 90 
                  k+v++iG+GpAGla+a  l ++g++ +++   + ++  g ll+  + +++ d++ ++       e       gi++ l+ e + +i    +++     
   CTQ29288.1 329 KRVAIIGAGPAGLACADMLVRHGVQPVVF---DRHPEIGGLLTFGIPAFKLDKSLLArrraifsE------MGIRFELNCEvGKDI--SMATL----- 410
                  58***************************...556778888888888888888877766432222......367777773322222..22223..... PP

                  ECTCEEEEEESEEEE---E.EE-BCTCTTC...............TTBEECCSECHHHHHHCCSS-T.......SEEEEES-SHHHHHHHHHHHHHT- CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  91 kegdeekiaydklvlAtGs.sprdlgipGv..............aenvgklvrtldsaealklkllp.......krivvvGgGyiGvElAaalaklgk 166
                          +yd++++  G  ++ + g+p +              +          +++ +l    ++        ++vv GgG +++++  ++ + g+
   CTQ29288.1 411 ------LADYDAVFVGAGTyRSMKAGLPNEeapgvydalpfliaN---------TKQVMGLAASAQEpyvntagLNVVVLGGGDTAMDCVRTALRHGA 493
                  ......358*********658888877755555556555555542.........4444444444444455555578********************99 PP

                  E.EEEEESSSSSS.TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.........EEEEEETTSCE...............EEESEEEE-S-EE CS
                  x.xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxx...............xxxxxxxxxxxxx RF
  Pyr_redox_2 167 e.vtlveardrll.raldkelsaaleealekeGvevklgtsvkeidgnge.........klevvledgee...............idadlvvvavGvr 238
                  + vt  ++rd+   ++ +ke++       ++eG  + ++ ++++++ +++         +  ++l+  +                ++ad v++a G+ 
   CTQ29288.1 494 RqVTCAYRRDEANmPGSKKEVK-----NAREEGALFEFNVQPVTLELDENgrvngvrflR--TELGAPDAggrrrptpipgsefvMPADAVIMAFGFH 584
                  77*********98444444443.....345557777777777755555555477444321..44444444667799999999999************* PP

                  ES-HHCSHCCT-EEEETTEE..E--TTS..BESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxx..xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 239 pstelleeklglelderggi..vvdefl..rtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  p +    e++g++ld++g+i   v +++  +t+ ++i+a GD +   +g +l+++A+++G
   CTQ29288.1 585 PHRMPWLEAAGVALDSQGRIkaGVESRYryQTSQEKIFAGGDAV---RGADLVVTAMAEG 641
                  *974433*************66566666778***********99...**********998 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6  10.1   3.3e-07   0.00018       1      51 []      11      73 ..      11      73 .. 0.70
   2 !   31.4   9.9   2.9e-10   1.6e-07       1      50 [.      86     141 ..      86     142 .. 0.97
   3 !    8.0   0.3    0.0058       3.1      28      48 ..     220     243 ..     185     247 .. 0.77
   4 ?   -2.1   0.2       8.4   4.6e+03       7      12 ..     285     290 ..     269     312 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 3.3e-07
      Fer4_9  1 kCtgCgaCveaC......pagvvvedaaerkarlraase..........eaCigCga..CveaCpkgai 51
                kC+gC+aC+ aC      +++v +++++   +                   C +C++  Cv  Cp++ai
  CTQ29288.1 11 KCIGCQACEVACvmahneEQHVLTPQRFLPRI------TvikaegqrnaITCRHCEDapCVRSCPNDAI 73
                7***********77776644444444433332......1333344688888***************997 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 2.9e-10
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraaseeaCigCga......CveaCpkga 50 
                 kC+gC++C+ aCp+gv++    ++ a l +as+ +C  C+       Cve Cp +a
  CTQ29288.1  86 KCIGCKSCMVACPFGVMQVVVTPQAAGLVKASAHKCDLCQGreagpaCVENCPAQA 141
                 7****************************************************997 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0058
      Fer4_9  28 lraaseeaCigCga...CveaCpk 48 
                 + ++++ +C++Cg+   C+  Cp 
  CTQ29288.1 220 QAQQQAARCLTCGEhsiCEWTCPL 243
                 23333379**************96 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 8.4
      Fer4_9   7 aCveaC 12 
                  C+ aC
  CTQ29288.1 285 LCEGAC 290
                 355555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         8   4.3e+03      10      20 ..      16      26 ..      14      35 .. 0.75
   2 !   17.2   0.0     1e-05    0.0057       1      36 [.     330     365 ..     330     404 .. 0.78
   3 !   20.7   0.0   8.6e-07   0.00047       1      78 [.     471     546 ..     471     549 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 8
                HHHHHHHHHHH CS
   Pyr_redox 10 iglElAgalae 20
                 ++E+A+++a+
  CTQ29288.1 16 QACEVACVMAH 26
                69*****9965 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1e-05
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSST CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllr 36 
                 +v+++G+G  gl +A +l ++g +  v++r++++  
  CTQ29288.1 330 RVAIIGAGPAGLACADMLVRHGVQPVVFDRHPEIGG 365
                 79*******************************983 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 8.6e-07
                 EEEEECSSHHHHHHHHHHHHTT.SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelg.kkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedg.vesvkl 78 
                 +vvv+GgG++++++  ++ ++g  +Vt+  r+d+         sk   ++ +++g  + +n +++ +e +e+g v++v++
  CTQ29288.1 471 NVVVLGGGDTAMDCVRTALRHGaRQVTCAYRRDEAN----MPGSKKEVKNAREEGALFEFNVQPVTLELDENGrVNGVRF 546
                 59****************9999569**********9....55667779999**********************9*99986 PP

>> Fer4_11  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9  13.9   1.3e-12   7.2e-10       9      98 ..      55     145 ..      51     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.3e-12
     Fer4_11   9 qCrhCleppCvasapseaivkdeetGaVlldektkkeevrevveacPykivrknee.......tgkvekCdmcldrveaGllpacvescptgalnfg 98 
                 +CrhC+++pCv+s+p++ai +      V + ++++  ++++++ acP+ ++++  +       +  ++kCd+c  r      pacve+cp++al++ 
  CTQ29288.1  55 TCRHCEDAPCVRSCPNDAIAQSG--DSVQVRQEKCI-GCKSCMVACPFGVMQVVVTpqaaglvKASAHKCDLCQGREA---GPACVENCPAQALTLA 145
                 7*******************998..67999999996.***********98765332111112145679*******988...7**********99876 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   6.1e-06    0.0033       2      33 ..     333     364 ..     332     368 .. 0.86
   2 !   15.0   0.0   2.1e-05     0.011     154     287 ..     459     604 ..     436     625 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.1e-06
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkg.nig 33 
                  IiGaGPaGla+a  l ++g++  ++ +++ +ig
   CTQ29288.1 333 IIGAGPAGLACADMLVRHGVQ-PVVFDRHpEIG 364
                  9*******************5.78999986665 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.1e-05
  Pyr_redox_3 154 skvkefhkyagqkvvViGgknSavDaAlelvrkga.eVtvvtrgseiekeesdpsyslkpd.ienrleelvke.ekikvlfnaevkeikekeeeykvk 248
                  s  + + ++ag +vvV Gg+++a+D      r+ga +Vt ++r++e +      + ++k    e  l e   +  ++++ +n +v+ ++   +e    
   CTQ29288.1 459 SAQEPYVNTAGLNVVVLGGGDTAMDCVRTALRHGArQVTCAYRRDEANMPG--SKKEVKNArEEGALFEFNVQpVTLELDENGRVNGVRFLRTELGAP 554
                  444556677899*********************9846*******9866654..444555440444566666666668888888888888777777666 PP

  Pyr_redox_3 249 tedgkkvev..........kddvvlatGykpdlsf.lkkslfeldedgrp 287
                   + g++  +           d v++a G++p+  + l++++++ld++gr+
   CTQ29288.1 555 DAGGRRRPTpipgsefvmpADAVIMAFGFHPHRMPwLEAAGVALDSQGRI 604
                  66666555555666666667778888888888655477777777777765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   9.8e-11   5.3e-08       1      35 [.     333     367 ..     333     374 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 9.8e-11
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGra 35 
                    I+GaG +Gl++A  L ++g++ +++++++ +GG +
     CTQ29288.1 333 IIGAGPAGLACADMLVRHGVQPVVFDRHPEIGGLL 367
                    9********************************65 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2  11.0   1.2e-06   0.00068       1      52 []      11      72 ..      11      72 .. 0.69
   2 !   20.0  14.9   1.4e-06   0.00077       1      52 []      55     101 ..      55     101 .. 0.90
   3 !   21.6  12.7   4.5e-07   0.00025       1      52 []      86     141 ..      86     141 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.2e-06
      Fer4_7  1 rCigCgaCvaaC......pvkaieldeeenek.gt..ekveidpekClgCga..CvavCPtga 52
                +CigC+aC++aC       +++++ + +   + ++  ++ + ++ +C +C+   Cv+ CP +a
  CTQ29288.1 11 KCIGCQACEVACvmahneEQHVLTPQRFLP-RiTVikAEGQRNAITCRHCEDapCVRSCPNDA 72
                7***********666555455555444322.122223455777889*****999******986 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1.4e-06
      Fer4_7   1 rCigCg..aCvaaCpvkaieldeeenekgtekveidpekClgCgaCvavCPtga 52 
                 +C +C+   Cv+ Cp++ai    +       +v++++ekC+gC++C+ +CP+g+
  CTQ29288.1  55 TCRHCEdaPCVRSCPNDAIAQSGD-------SVQVRQEKCIGCKSCMVACPFGV 101
                 5****7669***********9665.......799******************96 PP

  == domain 3  score: 21.6 bits;  conditional E-value: 4.5e-07
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenekgtekveidpekClgCg...a...CvavCPtga 52 
                 +CigC+ C++aCp +++++    +++g  k   ++ kC  C+   a   Cv+ CP++a
  CTQ29288.1  86 KCIGCKSCMVACPFGVMQVVVTPQAAGLVK--ASAHKCDLCQgreAgpaCVENCPAQA 141
                 7******************99877777544..44555555533334445******987 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   1.9   0.00035      0.19       5      19 ..       8      22 ..       4      26 .. 0.88
   2 ?    7.0   4.2     0.012       6.3       9      24 .]      56      73 ..      55      73 .. 0.91
   3 !   23.0   2.0   1.1e-07   5.8e-05       2      23 ..      80     101 ..      79     102 .. 0.91
   4 !   12.2   2.0   0.00027      0.14       6      24 .]     118     142 ..     114     142 .. 0.89
   5 ?    6.6   0.7     0.016       8.7       6      20 ..     225     242 ..     224     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00035
      Fer4_6  5 dpdkCigCgdCvrvC 19
                d  kCigC +C+++C
  CTQ29288.1  8 DSRKCIGCQACEVAC 22
                778************ PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.012
      Fer4_6  9 CigCgd..CvrvCPegai 24
                C +C+d  Cvr CP +ai
  CTQ29288.1 56 CRHCEDapCVRSCPNDAI 73
                99**999*******9987 PP

  == domain 3  score: 23.0 bits;  conditional E-value: 1.1e-07
      Fer4_6   2 veidpdkCigCgdCvrvCPega 23 
                 v++ ++kCigC  C+++CP+g+
  CTQ29288.1  80 VQVRQEKCIGCKSCMVACPFGV 101
                 67889**************996 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 0.00027
      Fer4_6   6 pdkCigC.gd.....CvrvCPegai 24 
                 + kC+ C g+     Cv +CP++a+
  CTQ29288.1 118 AHKCDLCqGReagpaCVENCPAQAL 142
                 569****9999************97 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.016
      Fer4_6   6 pdkCigCgd...CvrvCP 20 
                 + +C+ Cg+   C+  CP
  CTQ29288.1 225 AARCLTCGEhsiCEWTCP 242
                 579*************** PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   4.0   0.00017     0.093       4      18 ..       8      22 ..       6      22 .. 0.92
   2 !    7.5   1.1    0.0072       3.9      14      23 ..      64      73 ..      63      74 .. 0.96
   3 !   28.0   1.8   2.3e-09   1.2e-06       2      22 ..      81     101 ..      80     103 .. 0.90
   4 ?    6.4   0.8     0.015       8.3      13      24 .]     132     143 ..     132     143 .. 0.91
   5 ?   -1.2   0.1       3.9   2.1e+03      13      19 ..     236     242 ..     235     243 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00017
                ETTTSSS-THHHHHS CS
        Fer4  4 deekCigCGaCvevC 18
                d  kCigC aC+ +C
  CTQ29288.1  8 DSRKCIGCQACEVAC 22
                6679*********** PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0072
                HHHHSTTTEE CS
        Fer4 14 CvevCPvgAI 23
                Cv  CP++AI
  CTQ29288.1 64 CVRSCPNDAI 73
                *********9 PP

  == domain 3  score: 28.0 bits;  conditional E-value: 2.3e-09
                 EEETTTSSS-THHHHHSTTTE CS
        Fer4   2 videekCigCGaCvevCPvgA 22 
                 ++ +ekCigC+ C+ +CP+g+
  CTQ29288.1  81 QVRQEKCIGCKSCMVACPFGV 101
                 6889***************97 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.015
                 HHHHHSTTTEEE CS
        Fer4  13 aCvevCPvgAIt 24 
                 aCve CP  A+t
  CTQ29288.1 132 ACVENCPAQALT 143
                 7********986 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 3.9
                 HHHHHST CS
        Fer4  13 aCvevCP 19 
                 +C+  CP
  CTQ29288.1 236 ICEWTCP 242
                 6*****9 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.2e-08   6.7e-06       4      34 ..     331     361 ..     329     363 .. 0.94
   2 ?   -1.2   0.0       1.7   9.5e+02     263     293 ..     598     628 ..     591     631 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.2e-08
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    V+I+GaGpaGl  a +L ++Gv+ v+ +++ 
     CTQ29288.1 331 VAIIGAGPAGLACADMLVRHGVQPVVFDRHP 361
                    99***************************96 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.7
                    EEEEEEEEEEEEEEEESSSEETTEEE-GGGT CS
  FAD_binding_3 263 veieevsawtvaqrvaekyrkgrvflaGDAa 293
                     +++   +++v++r+  + +++++f  GDA+
     CTQ29288.1 598 LDSQGRIKAGVESRYRYQTSQEKIFAGGDAV 628
                    566777788999******************8 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   8.7e-08   4.7e-05       2      42 ..     329     369 ..     328     375 .. 0.96
   2 ?    0.6   0.0      0.28   1.5e+02     139     214 ..     414     501 ..     399     508 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 8.7e-08
    FMO-like   2 kkvaviGaGvsGlasikccleegleptcfersddiGGlwrf 42 
                 k+va+iGaG +Gla     +  g++p+ f+r  +iGGl  f
  CTQ29288.1 329 KRVAIIGAGPAGLACADMLVRHGVQPVVFDRHPEIGGLLTF 369
                 9*************************************988 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.28
    FMO-like 139 fdavmvctGhh..vnphlplesfpGiek...f.....kGqyfhsrdykepevf.kgkrvlviGlGnsggd.iavelsrtaeqvllstr 214
                 +dav v +G +  +++ lp e  pG+     f     k  +  +   +ep v   g  v+v+G G+++ d + + l + a+qv  + r
  CTQ29288.1 414 YDAVFVGAGTYrsMKAGLPNEEAPGVYDalpFliantKQVMGLAASAQEPYVNtAGLNVVVLGGGDTAMDcVRTALRHGARQVTCAYR 501
                 8999999997633678899999999753111111111333333445566665414778999999999998345677888888876655 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3  15.1    0.0045       2.5       3      56 .]       6      69 ..       4      69 .. 0.84
   2 !    8.6   3.4    0.0036         2       5      24 ..      52      73 ..      48      83 .. 0.77
   3 !   26.2  11.3   1.1e-08   6.2e-06       4      56 .]      82     138 ..      79     138 .. 0.71
   4 ?   -1.9   8.0       6.9   3.7e+03       5      24 ..     224     254 ..     220     311 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0045
     Fer4_10  3 vidddtCirCgkCvkaCPadl.........tsvgakgeaseeeavrk.kvekCtgcg..aCveaCP 56
                  d+ +Ci+C++C  aC   +         t ++  + ++ ++a+   +   C +c+   Cv++CP
  CTQ29288.1  6 LSDSRKCIGCQACEVAC--VMahneeqhvlTPQRFLPRITVIKAEGQrNAITCRHCEdaPCVRSCP 69
                67999************..3447******9888888888877777766999*****777******9 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0036
     Fer4_10  5 dddtCirCg..kCvkaCPadlt 24
                ++ tC +C+   Cv++CP d+ 
  CTQ29288.1 52 NAITCRHCEdaPCVRSCPNDAI 73
                6789*****999******9653 PP

  == domain 3  score: 26.2 bits;  conditional E-value: 1.1e-08
     Fer4_10   4 idddtCirCgkCvkaCPadltsvgakgeaseeeavrk.kvekCtgcg...aCveaCP 56 
                 + +++Ci+C+ C+ aCP+ + +v+++++a +  + +  k++ C+g +   aCve CP
  CTQ29288.1  82 VRQEKCIGCKSCMVACPFGVMQVVVTPQAAGLVKASAhKCDLCQGREagpACVENCP 138
                 6689**************88666666666655555442555555533568******9 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 6.9
     Fer4_10   5 dddtCirCg...kCvkaCPadl........t 24 
                 ++ +C+ Cg    C   CP ++         
  CTQ29288.1 224 QAARCLTCGehsICEWTCPLHNhipqwielV 254
                 6789999997777999***977766644331 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   2.0   0.00016     0.085       6      20 ..       8      22 ..       3      23 .. 0.90
   2 !    7.7   3.6    0.0075       4.1       9      22 .]      55      70 ..      47      70 .. 0.88
   3 !   18.5   1.9   2.8e-06    0.0015       4      21 ..      81      98 ..      78      99 .. 0.86
   4 ?    6.1   2.1     0.024        13       9      22 .]     120     139 ..     113     139 .. 0.82
   5 !    8.1   1.6    0.0056         3       8      21 ..     226     242 ..     221     243 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00016
      Fer4_2  6 dtdrCigCgaCvsaC 20
                d+++CigC aC  aC
  CTQ29288.1  8 DSRKCIGCQACEVAC 22
                889**********9* PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0075
      Fer4_2  9 rCigCg..aCvsaCPa 22
                +C +C+  +Cv +CP+
  CTQ29288.1 55 TCRHCEdaPCVRSCPN 70
                7****899*******5 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 2.8e-06
      Fer4_2  4 vvdtdrCigCgaCvsaCP 21
                +v  ++CigC++C  aCP
  CTQ29288.1 81 QVRQEKCIGCKSCMVACP 98
                56689************* PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.024
      Fer4_2   9 rCigCg......aCvsaCPa 22 
                 +C  C       aCv +CPa
  CTQ29288.1 120 KCDLCQgreagpACVENCPA 139
                 799994467779*******8 PP

  == domain 5  score: 8.1 bits;  conditional E-value: 0.0056
      Fer4_2   8 drCigCg...aCvsaCP 21 
                 +rC+ Cg   +C + CP
  CTQ29288.1 226 ARCLTCGehsICEWTCP 242
                 69****9999******9 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3  14.2      0.34   1.9e+02       4      57 ..       8      73 ..       6      75 .. 0.56
   2 !   19.2  11.7   1.8e-06     0.001       7      55 ..      55     100 ..      49     104 .. 0.81
   3 !   18.1  10.5   4.1e-06    0.0022       3      56 ..      82     141 ..      80     144 .. 0.71
   4 ?    1.8   1.5      0.49   2.7e+02      36      57 ..     223     247 ..     214     249 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.34
     Fer4_21  4 dedkCigCgkCliaCedtshqai.eidaktvl..........kvvedeCvGCn..lCssvCPvedci 57
                d+ kCigC+ C +aC  +  +    +++++ l          +  + +C  C+   C+  CP +d+i
  CTQ29288.1  8 DSRKCIGCQACEVACVMAHNEEQhVLTPQRFLpritvikaegQRNAITCRHCEdaPCVRSCP-NDAI 73
                6789***********85433322222333322333222222233344677775335888899.5777 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.8e-06
     Fer4_21   7 kCigCgk..CliaCedtshqaieidaktvlkvvedeCvGCnlCssvCPved 55 
                 +C +C+   C+ +C+    +ai  ++++v +v++++C+GC+ C+  CP  +
  CTQ29288.1  55 TCRHCEDapCVRSCP---NDAIAQSGDSV-QVRQEKCIGCKSCMVACPF-G 100
                 677886444999999...59**9887766.9*****************6.5 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 4.1e-06
     Fer4_21   3 idedkCigCgkCliaCedtshqaieidakt.vlkvvedeCvGCn......lCssvCPvedc 56 
                 + ++kCigC++C++aC+ + +q + + +++  +k  +++C  C+       C++ CP  ++
  CTQ29288.1  82 VRQEKCIGCKSCMVACPFGVMQVVVTPQAAgLVKASAHKCDLCQgreagpACVENCPA-QA 141
                 789***************9999997655541445556666666533344469999995.55 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.49
     Fer4_21  36 vvedeCvGC...nlCssvCPvedci 57 
                  ++ +C  C    +C   CP+++ i
  CTQ29288.1 223 QQAARCLTCgehSICEWTCPLHNHI 247
                 4566788884444788888887766 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.5e-07   0.00024      19      85 ..     330     396 ..     318     421 .. 0.83
   2 ?   -2.9   0.0         6   3.2e+03      12      34 ..     464     486 ..     457     494 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.5e-07
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTBS...EEEEETTTHHHHHHTT---E CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlfs...aivvrkpakelLdelgikye 85 
                  v+i+GaG++GL++a +l ++ +++ ++++r+  +GG    G   f+    ++ r   +++ +e+gi++e
  CTQ29288.1 330 RVAIIGAGPAGLACADMLVRH-GVQPVVFDRHPEIGGLLTFGIPAFKldkSLLAR--RRAIFSEMGIRFE 396
                 599******************.***************999998888532133333..4568888888876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6
                 HHHHTEEEEEEE--SHHHHHHHH CS
        Thi4  12 llkyaesDvvivGaGssGLtaay 34 
                 +++ a  +vv+ G+G + + + +
  CTQ29288.1 464 YVNTAGLNVVVLGGGDTAMDCVR 486
                 567778899*****999888766 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.012       6.3       3      39 ..     324     360 ..     323     415 .. 0.87
   2 !   11.0   0.0   0.00081      0.44       3      55 ..     465     572 ..     464     656 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.012
  NAD_binding_7   3 ldlkgkkvlvvGgGevAarkvrklleagakvtvvape 39 
                    ++ +gk+v ++G+G+ ++  +  l++ g + +v +  
     CTQ29288.1 324 VKPSGKRVAIIGAGPAGLACADMLVRHGVQPVVFDRH 360
                    5789*********************999999887765 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00081
  NAD_binding_7   3 ldlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeele.......elvklaeee..................................... 54 
                    ++  g +v+v GgG+ A+  vr+ l+ ga+ +  a +     e       + vk a+ee                                     
     CTQ29288.1 465 VNTAGLNVVVLGGGDTAMDCVRTALRHGARQVTCAYRR---DEanmpgskKEVKNAREEgalfefnvqpvtleldengrvngvrflrtelgapdag 557
                    678899**********************9866655552...2211334333333333333444444444444444445555555555555555555 PP

  NAD_binding_7  55 ..............l 55 
                                  +
     CTQ29288.1 558 grrrptpipgsefvM 572
                    555555555555550 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00062      0.34      29      62 ..     329     362 ..     316     366 .. 0.88
   2 !    6.9   0.2    0.0061       3.3      29      58 ..     470     499 ..     448     649 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00062
                  -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH CS
  AlaDh_PNT_C  29 akvlviGgGvaGlqAiatakglgakVtvlDvrpa 62 
                   +v +iG+G aGl+ + + ++ g + +v+D  p+
   CTQ29288.1 329 KRVAIIGAGPAGLACADMLVRHGVQPVVFDRHPE 362
                  489**************************99876 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0061
                  -EEEEESTSHHHHHHHHHHHHTT-EEEEEE CS
  AlaDh_PNT_C  29 akvlviGgGvaGlqAiatakglgakVtvlD 58 
                   +v+v+GgG   +  ++ta + ga+ + + 
   CTQ29288.1 470 LNVVVLGGGDTAMDCVRTALRHGARQVTCA 499
                  479********************9644333 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.3e-06   0.00069       2      42 ..     331     371 ..     330     393 .. 0.93
   2 ?   -2.9   0.3       5.9   3.2e+03       2      24 ..     472     494 ..     471     496 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.3e-06
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsgl 42 
                   v ++G+gpaG+a+A    r+G + ++ ++++ +GGllt g+
    CTQ29288.1 331 VAIIGAGPAGLACADMLVRHGVQPVVFDRHPEIGGLLTFGI 371
                   89************************************886 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.9
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGak 24 
                   vvV GGg   + +  +A r+Ga+
    CTQ29288.1 472 VVVLGGGDTAMDCVRTALRHGAR 494
                   9**********999999999997 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   1.6e-06   0.00084       2      36 ..     330     364 ..     329     369 .. 0.94
   2 ?   -2.8   0.1       3.5   1.9e+03       2      25 ..     471     494 ..     470     500 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.6e-06
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36 
                  +v++iG+G+AGl +A  + ++g + +++++ +++g
   CTQ29288.1 330 RVAIIGAGPAGLACADMLVRHGVQPVVFDRHPEIG 364
                  79****************************99998 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.5
                  SEEEE--SHHHHHHHHHHHHTT-- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkr 25 
                  +v+v+GgG   + +  +a ++g+r
   CTQ29288.1 471 NVVVLGGGDTAMDCVRTALRHGAR 494
                  69*******999999999777764 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00087      0.47      11      45 ..     327     360 ..     320     371 .. 0.86
   2 ?    6.4   0.0     0.016       8.9       9      46 ..     466     503 ..     457     514 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00087
                   TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESS CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRt 45 
                   ++k+v +iGaG  +   a +L+++gv+  vv+ R 
    CTQ29288.1 327 SGKRVAIIGAGPAGLACADMLVRHGVQP-VVFDRH 360
                   689***********************95.566665 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.016
                   ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSH CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtl 46 
                   + ++ +v+++G G +a   ++  l++g+++v+ a R  
    CTQ29288.1 466 NTAGLNVVVLGGGDTAMDCVRTALRHGARQVTCAYRRD 503
                   677889**************************998865 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.7     0.015       8.1       3      14 ..      11      22 ..       9      23 .. 0.94
   2 ?    7.2   1.9     0.015       8.3       3      15 ..      55      69 ..      51      77 .. 0.88
   3 !   19.6   3.5   1.6e-06   0.00087       1      17 []      84     100 ..      84     101 .. 0.94
   4 ?    1.2   1.1       1.3     7e+02       5      16 ..     122     139 ..     118     145 .. 0.68
   5 !    8.5   0.6    0.0057       3.1       3      15 ..     227     242 ..     225     254 .. 0.91
   6 ?   -0.7   0.6         5   2.7e+03       7      14 ..     280     290 ..     278     293 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.015
      Fer4_4  3 rCigCgsCvaaC 14
                +CigC +C+ aC
  CTQ29288.1 11 KCIGCQACEVAC 22
                7*********** PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.015
      Fer4_4  3 rCigCgs..CvaaCP 15
                +C +C    Cv++CP
  CTQ29288.1 55 TCRHCEDapCVRSCP 69
                599***779****** PP

  == domain 3  score: 19.6 bits;  conditional E-value: 1.6e-06
      Fer4_4   1 qerCigCgsCvaaCPqg 17 
                 qe+CigC+sC+ aCP+g
  CTQ29288.1  84 QEKCIGCKSCMVACPFG 100
                 79*************86 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 1.3
      Fer4_4   5 igCg......sCvaaCPq 16 
                   C       +Cv  CP 
  CTQ29288.1 122 DLCQgreagpACVENCPA 139
                 55554333347*****96 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.0057
      Fer4_4   3 rCigCgs...CvaaCP 15 
                 rC+ Cg    C+ +CP
  CTQ29288.1 227 RCLTCGEhsiCEWTCP 242
                 9*****8889*****9 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 5
      Fer4_4   7 Cgs...CvaaC 14 
                 C++   C+ aC
  CTQ29288.1 280 CPQdrlCEGAC 290
                 66666688888 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.4e-05    0.0073      17      70 ..     311     362 ..     300     385 .. 0.84
   2 ?   -2.7   0.0       6.1   3.3e+03      31      68 ..     464     501 ..     451     518 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.4e-05
                   HHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  17 evregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskk 70 
                   +  +  w  + +l++ + sgk+v+iiG+G  G a a++l   g++ +++dr+++
    CTQ29288.1 311 QALASGW--RPDLSQVKPSGKRVAIIGAGPAGLACADMLVRHGVQPVVFDRHPE 362
                   3445568..8899999***********************************976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.1
                   BS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSS CS
  2-Hacid_dh_C  31 gkelsgktvGiiGlGrIGqavakrlkafgmkviaydrs 68 
                     + +g  v ++G G+ +    +++   g++ +    +
    CTQ29288.1 464 YVNTAGLNVVVLGGGDTAMDCVRTALRHGARQVTCAYR 501
                   55678889999999999999999999888854444333 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   1.5e-05     0.008       1      33 [.     330     364 ..     330     370 .. 0.94
   2 ?   -2.3   0.0       4.7   2.5e+03     155     202 ..     516     583 ..     511     608 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.5e-05
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiag 33 
                 +v+iiG+G +Gl++A  L r+g   +++++++++g
  CTQ29288.1 330 RVAIIGAGPAGLACADMLVRHGvqPVVFDRHPEIG 364
                 59********************9*9******9998 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.7
                 HHHHTT-EEEESECEEEEEEEE.TCEEEEE......EECTEEEE.................EEEEEEE--GG CS
         DAO 155 aaealGveilegtevtgleeed.gkvwgve......rttpgend.................aadavVnaaGa 202
                  a++ G+ + ++ + + le ++ g+v gv+           + d                  adav++a G 
  CTQ29288.1 516 NAREEGALFEFNVQPVTLELDEnGRVNGVRflrtelG----APDaggrrrptpipgsefvmPADAVIMAFGF 583
                 5788888888887766676544489999988544442....3322333446666666667755777777774 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0072       3.9       1      36 [.     330     361 ..     330     367 .. 0.83
   2 ?    5.0   0.0     0.066        36       2      46 ..     472     514 ..     471     530 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0072
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSC CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnp 36 
                    +++iiGaG  g a a  l+++g   + +v   +r+p
     CTQ29288.1 330 RVAIIGAGPAGLACADMLVRHG--VQPVV-F-DRHP 361
                    69********************..45555.3.5655 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.066
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHH CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeel 46 
                    + ++G+G+ +   ++ +l++g  +++++ a +r++  +   ++e+
     CTQ29288.1 472 VVVLGGGDTAMDCVRTALRHG--ARQVTCAYRRDEANMPGSKKEV 514
                    6799*****************..9****9*999998776666665 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   9.2   1.2e-05    0.0066       2      64 ..       9      71 ..       8      72 .. 0.77
   2 ?    5.8  13.7     0.035        19       3      63 ..      85     139 ..      83     141 .. 0.65
   3 ?   -1.6  15.9       7.2   3.9e+03       5      64 ..     121     244 ..     117     247 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.2e-05
      Fer4_8  2 lekCieCgaCqsaCpvlrrtkkhlldargeaae.dvqeeqvleeeealwsCttcga..CtevCpvg 64
                 +kCi+C+aC+ aC +++++ +h l+++       v + ++   ++++ +C +c+   C++ Cp++
  CTQ29288.1  9 SRKCIGCQACEVACVMAHNEEQHVLTPQRFLPRiTVIKAEG---QRNAITCRHCEDapCVRSCPND 71
                689***********988888888777777655542333333...66799******999******85 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.035
      Fer4_8   3 ekCieCgaCqsaCpvlrrtkkhlldargeaaedvqeeqvleeeealwsCttcga...CtevCpv 63 
                 ekCi+C  C+ aCp+   +     +a g +++   + ++       + C++ +a   C+e+Cp 
  CTQ29288.1  85 EKCIGCKSCMVACPFGVMQVVVTPQAAGLVKA---SAHK------CDLCQGREAgpaCVENCPA 139
                 79************666555454455555455...2222......4556555557778888886 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 7.2
      Fer4_8   5 CieCg......aCqsaCp.......................vlrr......................tkkhlldargeaaedvqeeqvlee........ 44 
                 C  C+      aC ++Cp                       +  +                      +++    +rge  +                  
  CTQ29288.1 121 CDLCQgreagpACVENCPaqaltladdetlitlakqrrlrsA--CqevqpwqratplcsqpnagakvRQMAMTPPRGEPDK---------Laaevrksh 208
                 333333333345669999776654444444333333333330..0333333333333333333333222344444444444.........033444444 PP

      Fer4_8  45 .............eealwsCttcga...CtevCpvg 64 
                              ++ + +C+tcg+   C+  Cp +
  CTQ29288.1 209 feeiyqpftpqqaQQQAARCLTCGEhsiCEWTCPLH 244
                 6668889999999999******************87 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0035       1.9       1      33 [.     331     363 ..     331     411 .. 0.91
   2 ?    4.6   0.0     0.081        44       1      35 [.     472     510 ..     472     594 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0035
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGG CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreef 33 
                 ++i+Gag+ + a+a+++ + g++ +v+d  +e+
  CTQ29288.1 331 VAIIGAGPAGLACADMLVRHGVQPVVFDRHPEI 363
                 589*************************99875 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.081
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG....- CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefa....t 35 
                 +v++G+g+ a  ++r a + g r + +  r++ a    +
  CTQ29288.1 472 VVVLGGGDTAMDCVRTALRHGARQVTCAYRRDEAnmpgS 510
                 689******************998888888853424442 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   9.6e-05     0.052       1      36 [.     332     362 ..     332     368 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.6e-05
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsep 36 
                    ai+GaGp+Gla+++ L+++      ++  +fd+++ 
     CTQ29288.1 332 AIIGAGPAGLACADMLVRHG-----VQPVVFDRHPE 362
                    8*****************95.....66678888766 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   8.8e-05     0.048       2      36 ..     331     365 ..     330     371 .. 0.90
   2 ?   -1.9   0.0       2.4   1.3e+03     159     204 ..     525     586 ..     512     643 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.8e-05
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36 
                    v +iG+G AGLa+A  + ++G + +v +  +e gg
     CTQ29288.1 331 VAIIGAGPAGLACADMLVRHGVQPVVFDRHPEIGG 365
                    89************************999999888 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.4
                    EESEEEEEEEE.CTTEEEEEEEEET...............TTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 159 qerteadeLiv.edgrvtGavvenp...............esgrevrirakavvlatgGfgr 204
                     ++ + ++L   e+grv+G+ +                    g+e+ + a+av++a g  ++
     CTQ29288.1 525 EFNVQPVTLELdENGRVNGVRFLRTelgapdaggrrrptpIPGSEFVMPADAVIMAFGFHPH 586
                    44444444444246677777766556666666666666666666666666666666655444 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.3     0.042        23       2      65 ..      12      23 ..       7      37 .. 0.69
   2 ?    7.3   2.8     0.017       9.2       1      20 [.      55      76 ..      55      86 .. 0.82
   3 ?   10.6   3.9    0.0016      0.85       1      20 [.      86     105 ..      86     122 .. 0.83
   4 ?    5.1   2.9     0.083        45       7      24 ..     132     149 ..     120     180 .. 0.76
   5 ?    5.2   0.4     0.074        40      43      66 ..     217     243 ..     188     244 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.042
     Fer4_16  2 CgtCgkCaevCPtnaikekkekeiearecisyntaekkdlaedeekckkqeaitgCdiCqdvCP 65
                C++C++C  +C                                                    +
  CTQ29288.1 12 CIGCQACEVAC----------------------------------------------------V 23
                55555555555....................................................4 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.017
     Fer4_16  1 rCgtCgk..CaevCPtnaikek 20
                +C  C+   C+ +CP +ai + 
  CTQ29288.1 55 TCRHCEDapCVRSCPNDAIAQS 76
                5999*9999**********987 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.0016
     Fer4_16   1 rCgtCgkCaevCPtnaikek 20 
                 +C++C+ C+ +CP ++++  
  CTQ29288.1  86 KCIGCKSCMVACPFGVMQVV 105
                 5************9999865 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.083
     Fer4_16   7 kCaevCPtnaikekkeke 24 
                 +C+e CP++a++   +++
  CTQ29288.1 132 ACVENCPAQALTLADDET 149
                 6**********9875444 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.074
     Fer4_16  43 edeekckkqeaitgCd...iCqdvCPa 66 
                 + +++++++ ++  C+   iC+ +CP 
  CTQ29288.1 217 TPQQAQQQAARCLTCGehsICEWTCPL 243
                 44455556899999999999*****95 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.095        52     234     277 ..      73     114 ..      67     131 .. 0.73
   2 ?    8.0   0.0    0.0027       1.5       2      29 ..     339     366 ..     338     368 .. 0.95
   3 ?   -2.1   0.2       3.2   1.7e+03     410     452 .]     614     649 ..     602     649 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.095
                    EEEETTCEEEEETTSTEEEESEEEE-S-HHHHHSSEEES...CCSHH CS
  Amino_oxidase 234 ikregdgvtvtledgevveaDaVvvTvplgvlkailfsP...plpde 277
                    i+++gd v v+  + + + +++++v++p+gv++ +  +P   +l   
     CTQ29288.1  73 IAQSGDSVQVR--QEKCIGCKSCMVACPFGVMQ-VVVTPqaaGL--V 114
                    66766666665..445556**************.8888843444..4 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0027
                    HHHHHHHHHHHTTEEEEEEESSSSSBTT CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGR 29 
                    aGLa+A  L ++G++ +v+   + +GG 
     CTQ29288.1 339 AGLACADMLVRHGVQPVVFDRHPEIGGL 366
                    9**************************5 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.2
                    HHHHHCHHCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHHHHH CS
  Amino_oxidase 410 ydplakpegdprlffAGehtsreypgtvegAilSGlraAaril 452
                    y+ ++       +f  G+++     + v  A+  G++aA+ il
     CTQ29288.1 614 YQTSQ-----EKIFAGGDAVR--GADLVVTAMAEGRHAAQGIL 649
                    44444.....44888899988..88889999999999999886 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.021        12       5      40 ..     331     364 ..     329     382 .. 0.82
   2 ?    5.2   0.0     0.019        10     188     227 ..     466     504 ..     437     516 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.021
  K_oxygenase   5 ligiGiGpsnLsLailleevkkelkalflerqpefa 40 
                  +++iG+Gp+ L+ a +l  +   ++ ++++r+pe +
   CTQ29288.1 331 VAIIGAGPAGLACADMLVRHG--VQPVVFDRHPEIG 364
                  689********9999999998..*********9976 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.019
  K_oxygenase 188 llakkriaVvGsGqSaaeifedllrrqkkvelklvtrsea 227
                  + a+ +++V G+G +a + ++ +lr+ +  +++   r+++
   CTQ29288.1 466 NTAGLNVVVLGGGDTAMDCVRTALRHGA-RQVTCAYRRDE 504
                  677889******************9976.68888887765 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   9.3     7e-05     0.038       1      59 [.      11      71 ..      11      72 .. 0.75
   2 ?   11.4   1.4   0.00066      0.36      44      60 ..      85     101 ..      75     102 .. 0.82
   3 ?    0.6   9.6       1.6   8.8e+02      21      59 ..     196     244 ..     119     248 .. 0.77
   4 ?   -0.1   7.2       2.6   1.4e+03       1      56 [.     227     290 ..     227     293 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7e-05
     Fer4_17  1 rCiqCgyClpeCpsyeaydn...epkkllraaklglleeaekeekaslCieCge..CerkCPqg 59
                +Ci+C++C+ +C +  + ++    p+++l ++++ +    e +++a +C +C+   C+r+CP++
  CTQ29288.1 11 KCIGCQACEVACVMAHNEEQhvlTPQRFLPRITVIKA---EGQRNAITCRHCEDapCVRSCPND 71
                6************988755522257777777776544...4468999999997555******97 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00066
     Fer4_17  44 slCieCgeCerkCPqgl 60 
                 ++Ci+C+ C  +CP g+
  CTQ29288.1  85 EKCIGCKSCMVACPFGV 101
                 68999999999999765 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 1.6
     Fer4_17  21 epkkllraaklglleeaeke.......ekaslCieCge...CerkCPqg 59 
                 ep+kl+++++ + +ee+ +        ++a +C++Cge   Ce  CP +
  CTQ29288.1 196 EPDKLAAEVRKSHFEEIYQPftpqqaqQQAARCLTCGEhsiCEWTCPLH 244
                 56677777766666664443444444489*******98777*****965 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 2.6
     Fer4_17   1 rCiqCgy...ClpeCpsyeaydn.....epkkllraaklglleeaekeekaslCieCgeCerkC 56 
                 rC  Cg    C+  Cp ++ +++     +  ++++a++l+  ++   e +   C + ++Ce +C
  CTQ29288.1 227 RCLTCGEhsiCEWTCPLHNHIPQwielvKAGNIAAAVALSHQTNCLPEITGRVCPQDRLCEGAC 290
                 6999995556******999966655544556788888888777777777889999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 4688.74
//
Query:       CTQ29289.1  [L=1037]
Description: aminoglycoside/multidrug efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
          0 1403.7  11.0          0 1403.6  11.0    1.0  1  ACR_tran         AcrB/AcrD/AcrF family
    1.1e-10   41.0  33.2    3.5e-08   32.8  10.7    3.3  3  MMPL             MMPL family
      3e-06   26.7  23.4    0.00059   19.3   2.0    2.3  2  SecD_SecF        Protein export membrane protein
  ------ inclusion threshold ------
       0.17   11.9   0.0       0.38   10.8   0.0    1.5  1  Y2_Tnp           Putative transposase
          2    8.6   6.9        4.5    7.5   0.1    3.1  3  DUF2993          Protein of unknown function (DUF2993)
        8.8    6.7   6.0         17    5.8   0.5    3.0  3  EbsA             EbsA-like protein


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1403.6  11.0         0         0       1    1021 []       1    1027 [.       1    1027 [. 0.99

  Alignments for each domain:
  == domain 1  score: 1403.6 bits;  conditional E-value: 0
                  -HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEE.TTSEEEEEEEESTT CS
    ACR_tran    1 iikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqS.seglssitltFedg 96  
                  +++ffi+rpifa+vla++++l+G+l+ilslPv+++P++app+v+++++ypGas++++e++vtq++Eq+++gld+l+y+sSqS  +g+++itl+F  g
  CTQ29289.1    1 MANFFIDRPIFAWVLAILLCLTGTLAILSLPVEQYPDLAPPNVRITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSsATGQATITLSFTAG 97  
                  789*******************************************************************************99************* PP

                  S-HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHH CS
    ACR_tran   97 tdidiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkl 193 
                  td+d+A qqvqn+lq+a++kLP++vq++g+++ kt++++il+la++s+dgs++k++++d++++ni+d+Lsrv+GVgd++ +G s++++riwldp+kl
  CTQ29289.1   98 TDPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYG-SQYSMRIWLDPAKL 193 
                  **********************************************************************************.************** PP

                  HCTT--HHHHHHHHHHHSSB-EEEEE......TT-SB-EEEEESB---SHHHHHTSEEE.ETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEE CS
    ACR_tran  194 aklgltltdvvsalkeqnvnvaaGql......egqeeelliraqgqlqsaediekiivk.nqdgskvrlrDvAkVelgaeeerlaatfngkpavlle 283 
                  +++++t +dv++a+++qn+++a Gql      ++q  +++i+ q+ lq++e++++i+++ nqdgs+v l+DvA+Ve+gae++++ +++n +pa++l+
  CTQ29289.1  194 NSYQMTTKDVTDAISSQNAQIAVGQLggtpsvDKQALNATINSQSLLQTPEQFRNITLRvNQDGSEVTLGDVATVEMGAEKYDYLSRYNRQPASGLG 290 
                  *******************************99**************************************************************** PP

                  EEEETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ACR_tran  284 vkklpganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalg 380 
                  +k ++gan++++a++v ++l+eL++++P+g+e++v+y++t+fv+asi +VvktLleai+Lv+lv++lFLqn+ratlip+iavP++l+gtfavl+a+g
  CTQ29289.1  291 IKLASGANEMATAERVINRLNELAQFFPHGLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACG 387 
                  ************************************************************************************************* PP

                  --BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  381 fslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlv 477 
                  +s+N+lt+f++vlAiGl+vDdAiVvvEn+er ++eeg++p+ea++ksm++iqgalv+ia+vl+avf+P++f+gG++G+++rqf++tiv a++lsvlv
  CTQ29289.1  388 YSINTLTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLV 484 
                  ************************************************************************************************* PP

                  HHCCHHHHHHHHS---STT-CT...SHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB CS
    ACR_tran  478 altltPalcallLkerkeekek...kffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgv 571 
                  a++ltPalca+lLk+ k ++++   +ff +fnr+f+++ ++Y+ ++ k+l+++ +++l++++ll+++v+lf+++p++flP ed+g+++tsvqlp+g+
  CTQ29289.1  485 AMILTPALCATLLKPVKPGESHerkGFFGWFNRTFNRSASRYETFVGKILHRSLRWMLIYVLLLGGMVFLFLHLPTSFLPLEDRGMFTTSVQLPSGS 581 
                  ***************9998877789************************************************************************ PP

                  -HHHHHHHHHHHHH.HHH.TTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSS CS
    ACR_tran  572 sleqtqkvlkqvek.ilk.ekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletl 666 
                  +++qt kv+++ e+  l+ ek++vesvfa++G+ + g  +g+n a++f++Lk++++r+ ++ +++a+ier++k++++i++a+v++++p+++++l+++
  CTQ29289.1  582 TQQQTLKVVQKAEDyFLNnEKQNVESVFATVGSGPGG--NGQNVARMFVRLKDWDQRDPQTGTSFAIIERATKAFNQINEARVIASSPPAISGLGSS 676 
                  **************5455899************9999..9*****************99999*********************************** PP

                  SCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEE CS
    ACR_tran  667 sgvrselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvr 763 
                   g+++el++ ++g++++aL++a++ ll+ + ++p l++vr+++ +d+pqlqv+id++ka++lGvsi+dindtl+ta+g+syvndf+++gr++kv+v+
  CTQ29289.1  677 AGFDMELED-HAGKGHDALMAARDTLLELAGKNPLLTRVRHNGLDDSPQLQVDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQ 772 
                  *********.*************************************************************************************** PP

                  E-GGGSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHHH CS
    ACR_tran  764 leedlrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqeqea 860 
                  + +++r+ p+d++ ++vrn++g+mvp+sa+a++++e+g++++er+ng+++v+i g++a+g s+++a++++ek+a +  lp+g+++ewt++++qe+++
  CTQ29289.1  773 AAAKYRMLPDDINLWYVRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ--LPTGFGLEWTAMSYQERLS 867 
                  ****************************************************************************..******************* PP

                  HCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHH CS
    ACR_tran  861 snsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaile 957 
                  + ++++l+a++ll+vfl+Laalyes+s p++++l+vPl+++Galla+++rgle++v++qvGl+++iGl++kNail+vefa+el+e +g +l +a+l 
  CTQ29289.1  868 GAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANELNE-KGQDLLSATLS 963 
                  *************************************************************************************.9999******* PP

                  HHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  958 aakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlva 1021
                  a+++RLrPiLMT+la+i+GvlP+a+stgaGs++q+++g++v+gG++++tvL++++vP+++vlv+
  CTQ29289.1  964 ACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVR 1027
                  *************************************************************985 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.5     0.067     2e+02      39      86 ..     105     148 ..      59     245 .. 0.71
   2 !   32.8  10.7   1.2e-11   3.5e-08     138     322 ..     333     518 ..     293     527 .. 0.82
   3 !   17.6   7.8   4.9e-07    0.0015     145     307 ..     871    1031 ..     857    1037 .] 0.85

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.067
        MMPL  39 ealgsaaaeaavdelvdelkkdtkhvgevsdflsdpd.vaaafvSkDgk 86 
                 +++++ + ++a+++l +++++++  v+++ d+    + ++ afvS Dg+
  CTQ29289.1 105 QQVQN-QLQSAMRKLPQAVQNQGVTVRKTGDT----NiLTLAFVSTDGS 148
                 33333.45555555555555555555555555....3355556666654 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 1.2e-11
        MMPL 138 rdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRy.reelaaged 235
                  +as  d+ ++ + +++++++++ + ++++ a l+p + v v l+ +++++    ++ g  ++t  +++++vl+i+  +D a+ +v    r  +++g +
  CTQ29289.1 333 VKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVL----YACGYSINT-LTMFAMVLAIGLLVDDAIVVVENVeRIMSEEGLS 426
                 457777888899999******************************999993....344455554.45689****************9983556789999 PP

        MMPL 236 reeaviravastgkvvtaaGltvaiamlgLvv...arlpvlaqvGvaialGvlvdvlivlTllPAllvllGraalakprrkrkk.rwW.rrl 322
                  +ea  + ++++ ++ ++ ++++ + ++ +++   ++  + +q+ ++i  +++++vl+++ l+PAl+++l + + + ++++rk+ + W  r+
  CTQ29289.1 427 PREATRKSMGQIQGALVGIAMVLSAVFVPMAFfggTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERKGfFGWfNRT 518
                 9*************************9999993334567899***************************98887666667666665552444 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 4.9e-07
        MMPL  145 lklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeavi 241 
                  +  + +++l+v+++ L+ +y S   ++ ++l+v ++++ al     +   l  +++ + +gll+v+++  ++  a+l+v    e  ++g+d  +a  
  CTQ29289.1  871 APALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLA--TWMRGLENDVYFQ-VGLLTVIGL--SAKNAILIVEFANELNEKGQDLLSATL 962 
                  5567899*************************99999888766..8888877777655.567776655..56779********************** PP

        MMPL  242 ravastgkvvtaaGltvaiamlgLvvar...lpvlaqvGvaialGvlvdvlivlTllPAllvllGraal 307 
                   a ++  + +++  l +++ +l +++++    ++ ++vG+ +  G++ ++ +++ ++P + vl+ r+ +
  CTQ29289.1  963 SACRQRLRPILMTSLAFIFGVLPMATSTgagSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRRFP 1031
                  ************************986433389999***************************999853 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5  13.9   2.3e-05      0.07      30     186 ..     337     496 ..     318     498 .. 0.78
   2 !   19.3   2.0     2e-07   0.00059      37     180 ..     875    1020 ..     863    1029 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH..HHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHH CS
   SecD_SecF  30 aekavlallialvliliyvalrFewrvalaaiialvhDvii..tvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinl 126
                 ++++v  ll a++l++++++  F +++    i +++  v++  t +vl + g  ++  t+ a+   iG  v+d +vv + v+  + +++  + +e++ +
  CTQ29289.1 337 ITDVVKTLLEAILLVFLVMY-LFLQNFRATLIPTIAVPVVLmgTFAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENVER-IMSEEGLSPREATRK 433
                 45566666666666665555.5666666666666666666512566777778*****************************65.566699999****** PP

                 HHHHHHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHH CS
   SecD_SecF 127 slnqtLtrtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifiasplllll 186
                 s+ q     +   +++  v v + ++gg    + ++f+++++ ++++ ++ ++ +  +l ++l
  CTQ29289.1 434 SMGQIQGALVGIAMVLSAVFVPMAFFGGttgAIYRQFSITIVAAMVLSVLVAMILTPALCATL 496
                 ***99887777777777888999999997867889**********999998888887777665 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 2e-07
                  HHHHHHHHHHHHHHHT-.HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHH CS
   SecD_SecF   37 llialvliliyvalrFe.wrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnqtL 132 
                   +i+l+++++ +a  +e w+v++++++ +   vi ++ +  + g+e d+ + ++lLt+iG S ++ +++ +   e   ++k ++l  ++  +  q L
  CTQ29289.1  875 YAISLLVVFLCLAALYEsWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEL--NEKGQDLLSATLSACRQRL 969 
                  45678888888988887699***9999999*******9999*****************************998887..55699999*********** PP

                  HHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHH CS
   SecD_SecF  133 trtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifias 180 
                     ++tsl  ++ v+ +   +g   +s + + + ++ G+i+ t+ +if+  
  CTQ29289.1  970 RPILMTSLAFIFGVLPMATSTGagsGSQHAVGTGVMGGMISATVLAIFFVP 1020
                  *********998888888776655577778888888888888888888765 PP

>> Y2_Tnp  Putative transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.38      63     118 ..     229     286 ..     222     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
      Y2_Tnp  63 avaraklkrgllerdeefssllkkaskkgfvvhakkave..kerkvleyLarYisrpa 118
                 a++++  +++ll+++e+f++++ +++++g  v ++  ++   + ++ +yL+rY ++pa
  CTQ29289.1 229 ALNATINSQSLLQTPEQFRNITLRVNQDGSEVTLGDVATveMGAEKYDYLSRYNRQPA 286
                 4444555699************************98776668999********99998 PP

>> DUF2993  Protein of unknown function (DUF2993)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.8      0.17   5.1e+02     119     203 ..      36     130 ..      21     136 .. 0.60
   2 ?    7.5   0.1    0.0015       4.5      70     143 ..     198     268 ..     174     321 .. 0.68
   3 ?    2.1   0.1     0.064   1.9e+02       3      54 ..     699     749 ..     697     751 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.17
     DUF2993 119 qdlsnggvkltgnn.......lpvvveagl........rl........aagdgqlrleltdleaglglpesavdlpaelldalleglselldlpglpfg 194
                 +dl++ +v++t n        l+++v++ +        +l        a+g+ +++l++t+ +    +p++       + +++ ++l+  +  ++lp  
  CTQ29289.1  36 PDLAPPNVRITANYpgasaqtLENTVTQVIeqnmtgldNLmymssqssATGQATITLSFTAGT----DPDE-------AVQQVQNQLQSAM--RKLPQA 121
                 467788888888558888888777777766666665553344544544566669999999966....4333.......3455555555433..335555 PP

     DUF2993 195 lrltevrvt 203
                 ++ ++v+v+
  CTQ29289.1 122 VQNQGVTVR 130
                 555555544 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0015
     DUF2993  70 ltledvrldlsdilgkvrlvpvgrltatvtlteadlnralasp.llitdlqdlsnggvkltgnnlpvvveaglrl 143
                 +t++dv+  +s    + + + vg+l +t +++ + ln++++s+ ll+t  q  +n ++++  ++ +v+++  +++
  CTQ29289.1 198 MTTKDVTDAIS---SQNAQIAVGQLGGTPSVDKQALNATINSQsLLQTPEQ-FRNITLRVNQDGSEVTLGDVATV 268
                 55555555555...3567788********************9864444444.77888888776656666665554 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.064
     DUF2993   3 drgaaavaeqriatel.rsqlelaedpeVsiggfPfltqllaGeldsvsvaar 54 
                 d ++++  ++++ t++ + +l+ + +++V+i+      q+l+ ++d+++ +++
  CTQ29289.1 699 DTLLELAGKNPLLTRVrHNGLDDSPQLQVDIDQRK-A-QALGVSIDDINDTLQ 749
                 677788888888899988899**************.5.**********98876 PP

>> EbsA  EbsA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.3   9.8e+03      98     126 ..     576     604 ..     572     607 .. 0.75
   2 ?    5.8   0.5    0.0056        17      20      56 ..     876     912 ..     868     920 .. 0.89
   3 ?    2.3   0.1     0.064   1.9e+02      42      66 ..    1009    1034 ..    1007    1036 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.3
        EbsA  98 elklkekksrtflmrkkpkklfldalken 126
                 +l +   +++t+ + +k+ ++fl++ k+n
  CTQ29289.1 576 QLPSGSTQQQTLKVVQKAEDYFLNNEKQN 604
                 55555678889999999999999987665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0056
        EbsA  20 SitfiilfislilllEntriylksnlvlllflvlvil 56 
                  i+++++f+ l+ l+E+ +++++++lv+ l ++ ++l
  CTQ29289.1 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALL 912
                 68999***********************999987766 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.064
        EbsA   42 ksnlvlllflv.lvilgfkryliiee 66  
                  +s++vl++f+v l+++ ++r++ ++e
  CTQ29289.1 1009 ISATVLAIFFVpLFFVLVRRRFPLKE 1034
                  677888888874677799****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1037 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1326  (0.0739584); expected 358.6 (0.02)
Passed bias filter:                      729  (0.0406604); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.45
# Mc/sec: 6895.74
//
Query:       CTQ29290.1  [L=117]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-17   62.5   0.0    3.2e-17   62.3   0.0    1.0  1  ArsC          ArsC family
  ------ inclusion threshold ------
      0.036   14.3   0.0      0.051   13.8   0.0    1.2  1  Glutaredoxin  Glutaredoxin


Domain annotation for each model (and alignments):
>> ArsC  ArsC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   3.5e-21   3.2e-17       1      64 []       5     114 ..       5     114 .. 0.92

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 3.5e-21
                 EE-TT...........................................GCB-TTSHHHHHCT..CCCTTSBHHHHHHHHHH-GGGB-S-EEEESSE.EE CS
                 xxxxx...........................................xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        ArsC   1 Ygspn...........................................ellskrgttyreLn..ldkedlsedellelilenpsLirRPivvdgkr.lq 53 
                 Yg++n                                           +ll++rgtt+r+L+  l +   ++d++ +l+le+p++i+RP++++++r ++
  CTQ29290.1   5 YGIKNcdtikkarrwleahqieyrfhdyradgleraqldtfiaelgwqALLNTRGTTWRKLDesLRNSIDNADAAAALMLEMPAIIKRPLLCAPGRpML 103
                 888999999999999999999999999999999999999999999999**************9777777799999************************ PP

                 ESSSCCGGGGG CS
                 xxxxxxxxxxx RF
        ArsC  54 iGfneeeiraf 64 
                 +Gf+e+++++f
  CTQ29290.1 104 LGFSEASYQQF 114
                 ********998 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.7e-06     0.051       2      45 ..       3      46 ..       2      54 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.7e-06
                  EEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHH CS
  Glutaredoxin  2 vlftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkels 45
                  ++++ ++C   kka+r L+ + ++++++d  +d  +r++l  + 
    CTQ29290.1  3 TMYGIKNCDTIKKARRWLEAHQIEYRFHDYRADGLERAQLDTFI 46
                  68888999999*******************99999888886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 999.35
//
Query:       CTQ29291.1  [L=375]
Description: N-succinyl-diaminopimelate deacylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-43  148.7   0.0    2.3e-43  148.3   0.0    1.1  1  Peptidase_M20  Peptidase family M20/M25/M40
    1.8e-23   82.5   0.0    4.3e-23   81.3   0.0    1.7  2  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
      0.033   13.9   0.0       0.16   11.6   0.0    1.9  2  Peptidase_M28  Peptidase family M28
      0.082   11.7   0.0       0.11   11.2   0.0    1.1  1  Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.3   0.0     5e-47   2.3e-43       1     206 [.      62     371 ..      62     372 .. 0.95

  Alignments for each domain:
  == domain 1  score: 148.3 bits;  conditional E-value: 5e-47
                    EEEEES-BSSTTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.THHHHHHHHHH.TTTCESE CS
                    xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxx RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.gGakallegle.erekvda 93 
                    ++++H+DvVp+++ d+w + pf++t++dG+l+GrGa+dmkg+++a++ a++++ ++ ++++g + +l++ dEE++  +G+ +++e l+ ++e++d+
     CTQ29291.1  62 AFAGHTDVVPAGDADRWINpPFEPTIRDGMLFGRGAADMKGSLAAMVVAAERFVAQYPNHRGRLAFLITSDEEASAkNGTVKVVETLMaRNERLDY 157
                    589*******99999**********************************************************7668***********9******* PP

                    EEEEEEESSSBTCHSTETEEEE.......................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxx.......................................................................... RF
  Peptidase_M20  94 vfelhieepgileagklaigvv.......................................................................... 115
                       ++++ep+  e       vv                                                                          
     CTQ29291.1 158 ---CLVGEPSSTE-------VVgdvvkngrrgsltcnltihgvqghvayphladnpvhraapmlaelvniewdkgneffpptsmqianvqsgtgsn 243
                    ...77********.......223445799******************************************************************* PP

                    .....................................EEEEEEEEEESHEEECCHHHHHHHHHHHHHHHTSCEEEEEESSSBHTHHHHTTT.EEEE CS
                    .....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
  Peptidase_M20 116 .....................................kvevelleggapvtlndsplvkalaeaaeelfgekvelivsgpggtdarffagi.ptvm 173
                                                         +++ve++ +g+p+ +  ++lv+a+ +a+e +   k++l + g g++d rf+a++  +v+
     CTQ29291.1 244 nvipgdmfvqfnfrfsteltdemiksrviallekyqlRYSVEWWLSGQPFLTGRGKLVDAVVNAIEHYNEIKPQLLTNG-GTSDGRFIARMgAQVV 338
                    ************************************99*****************************64777*******.********99966888 PP

                    EEESSGGCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 174 ifgpgsglaHspnEyvdledlekgikvlarlle 206
                     +gp ++++H+ nE v+ +dl+  +++++r++e
     CTQ29291.1 339 ELGPVNATIHKINECVNAADLQLLARMYQRVME 371
                    9**888************************987 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   9.7e-27   4.3e-23       1     106 [.     175     280 ..     175     283 .. 0.97
   2 ?   -3.8   0.0       2.6   1.2e+04      25      35 ..     303     313 ..     298     319 .. 0.72

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 9.7e-27
                 SEB-EEEEEEEEEE-B-EEGG-TTTTB-HHHHHHHHHHCSCTTEEC.....TCCTCCCCCEECCE-C.CCCEESSEEEEEEEEEHHHHHHHHHHHHHHH CS
   M20_dimer   1 ighkGlaggkitvkgkagHsgapgagaNAieklarllaeledeegdiaeerslprttlnvtgiegGs.aknvipdeaeakidiRllpgedpeevleeie 98 
                 +g++G++++++t++g++gH ++p+ ++N+++ +a +lael + e+d++ ++++p+t+++++++++G+ + nvip+   +++++R++ + + e ++ ++ 
  CTQ29291.1 175 NGRRGSLTCNLTIHGVQGHVAYPHLADNPVHRAAPMLAELVNIEWDKG-NEFFPPTSMQIANVQSGTgSNNVIPGDMFVQFNFRFSTELTDEMIKSRVI 272
                 69**********************************************.************************************************** PP

                 HHHTSCCS CS
   M20_dimer  99 eilekeap 106
                 ++lek   
  CTQ29291.1 273 ALLEKYQL 280
                 ***99765 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.6
                 TTB-HHHHHHH CS
   M20_dimer  25 agaNAieklar 35 
                 a++NAie+  +
  CTQ29291.1 303 AVVNAIEHYNE 313
                 67888887555 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.7e-05      0.16      13      74 ..      59     136 ..      52     160 .. 0.83
   2 ?   -0.7   0.0      0.21   9.4e+02     127     194 ..     305     369 ..     265     372 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.7e-05
                    EEEEEEEE--B-TTT...............TCC.T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGS CS
  Peptidase_M28  13 evlllgAHyDsvgvg...............rgp.ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEag 74 
                    e+l++++H D v+ g               +g     GA D   + aa++  a+ ++a+  + + ++ fl+++ EEa+
     CTQ29291.1  59 ETLAFAGHTDVVPAGdadrwinppfeptirDGMlFGRGAADMKGSLAAMVVAAERFVAQYPNHRGRLAFLITSDEEAS 136
                    789999*******999999998887777653336667****999999999999999987767799***********95 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.21
                    HHHTT-TTSCCEEEEESSTT-STTHHHHTTT--EEEECTSSS-TTTTSTTSSGGGB-HHHHHHHHHHH CS
  Peptidase_M28 127 akpvgraaaedpfdersgrgrsDhspflkagvpvldlaetgfpevyHtprDtldnidkdtlariaelv 194
                    ++++++ ++ +p+  +   g+sD + +++ g +v+ l   + + ++H+ +  ++  d + lar+ + v
     CTQ29291.1 305 VNAIEHYNEIKPQLLT-NGGTSDGRFIARMGAQVVEL--GPVNATIHKINECVNAADLQLLARMYQRV 369
                    4433332222332222.35789999999999999999..88888999999988888888888887766 PP

>> Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.6e-05      0.11     383     429 ..     321     367 ..     303     369 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.6e-05
                    ---HCHHHHHHHHT-EEEEEE-EEBSTTSSSEEEECCHHHHHHHHHH CS
  Peptidase_M18 383 cGstigpilaaktGirtiDlGaaqlsmHSireltgskdveeavklfk 429
                     G+t    + a++G++++ lG+   ++H i e++ ++d++    +++
     CTQ29291.1 321 NGGTSDGRFIARMGAQVVELGPVNATIHKINECVNAADLQLLARMYQ 367
                    588888999******************************99988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2764.45
//
Query:       CTQ29292.1  [L=67]
Description: hypothetical protein CH1034_270003 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-32  110.8  12.2    2.7e-32  110.6  12.2    1.0  1  UPF0370   Uncharacterised protein family (UPF0370)
  ------ inclusion threshold ------
      0.046   14.1   0.0      0.055   13.9   0.0    1.1  1  PhoR      Phosphate regulon sensor protein PhoR


Domain annotation for each model (and alignments):
>> UPF0370  Uncharacterised protein family (UPF0370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6  12.2     3e-36   2.7e-32       1      60 [.       1      61 [.       1      62 [. 0.98

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 3e-36
     UPF0370  1 meWLadYWWv.illllvGillngikeLkrvdhkkfLdnkpelpPhrDnndkWddeddwpkk 60
                meWL ++WW+ +l++lvG+++n+ik+L+rvdhkkfL+nkp+lpPhrD+ndkWdd+ddwpk+
  CTQ29292.1  1 MEWLIKHWWIlVLVFLVGVIINVIKDLNRVDHKKFLNNKPDLPPHRDFNDKWDDDDDWPKH 61
                9*********99***********************************************97 PP

>> PhoR  Phosphate regulon sensor protein PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.2e-06     0.055      21      61 ..       3      44 ..       1      49 [. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.2e-06
        PhoR 21 llvgalaallllalllllawhlyqllrLsrW..LrkpkklepP 61
                +l+ ++++l+l++l+++++  +  l+r+ +   L+++++  pP
  CTQ29292.1  3 WLIKHWWILVLVFLVGVIINVIKDLNRVDHKkfLNNKPD-LPP 44
                9***************************99885555555.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 536.24
//
Query:       CTQ29293.1  [L=231]
Description: putative hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-47  160.8   0.0    4.6e-47  160.6   0.0    1.0  1  Abhydrolase_2  Phospholipase/Carboxylesterase
    5.2e-09   36.0   0.0    7.1e-09   35.5   0.0    1.1  1  DLH            Dienelactone hydrolase family
    4.5e-05   23.0   0.0       0.16   11.4   0.0    2.9  3  Peptidase_S9   Prolyl oligopeptidase family
     0.0057   15.9   0.1       0.25   10.6   0.0    2.5  3  Hydrolase_4    Serine aminopeptidase, S33
     0.0081   15.8   0.1      0.017   14.8   0.1    1.6  1  FSH1           Serine hydrolase (FSH1)
  ------ inclusion threshold ------
      0.082   12.5   0.0      0.089   12.4   0.0    1.2  1  Esterase       Putative esterase


Domain annotation for each model (and alignments):
>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.6   0.0   1.5e-50   4.6e-47       2     215 ..       4     206 ..       3     208 .. 0.94

  Alignments for each domain:
  == domain 1  score: 160.6 bits;  conditional E-value: 1.5e-50
                    EEEEEE--SS---EEEEEE--TT--SHHHHHHHH.TT--TTEEEEEE---EEE-GGGTT-EEE-SS-B--SSTTS-B-HHHHHHHHHHHHHHHHHH CS
  Abhydrolase_2   2 eiaevvspkdkaqavviflHGlGdsghawaeaakteaalpnikfifphgpelpvtlnggmrmpaWfdlvglspekkedeagikksaekleelidae 97 
                    +++ v+sp+ +aq++++++HG+Gd++ +++++ +++a+ ++ ++i++ g  +p   ++g+   +Wf+l+g+++e+  ++++i+++++++ e+++++
     CTQ29293.1   4 DHFIVQSPATPAQQLLLLFHGVGDNPVSMGQIGSWFAPQFPDALIVSIGGVEPCG-PNGR---QWFSLQGVTEEN--RQQRIDAIMPTFIEIVRYW 93 
                    6889************************************************998.5567...7***********..7788*************** PP

                    HHTT.--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEE CS
  Abhydrolase_2  98 lkkg.ipssriiigGFSqGaalalylaltlpkklggivafsgalplsqklessatavtkklpilqiHgeeDpvvplalgkaakevlkkllkkvelk 192
                    ++k+ +   +++++GFSqGa+++l+++++ p  +++++af+g+++  ++++   ta    + i++iHg eD v++la +  a+e+l+++  +v+l+
     CTQ29293.1  94 QEKSgVSPLATALIGFSQGAIMSLESIKAAPDLASRVIAFNGRYATLPETAT--TA----TTIHLIHGGEDRVIDLAWAVSAEEALQQAGGDVTLD 183
                    *9987***************************************99888874..44....46********************************** PP

                    EETT--SS--HHHHHHHHHHHHH CS
  Abhydrolase_2 193 syeglaHsideeemqdikeflkk 215
                    ++ +l+H+id ++mq + e l++
     CTQ29293.1 184 IVDDLGHAIDDRSMQLAIERLRY 206
                    ***************99998887 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   2.4e-12   7.1e-09      71     192 ..      75     195 ..      65     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 2.4e-12
         DLH  71 skvaeekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaev.pevdaavafYGlspekeleeaakikapilalfgeeDefipadeveklee 168
                 +++  ++++  +   v+y+++++ vs+   +++Gf  G+ ++l++++   + + +++af G     +l e+a  +++i  ++g+eD +i+ + +   ee
  CTQ29293.1  75 RQQRIDAIMPTFIEIVRYWQEKSGVSPLATALIGFSQGAIMSLESIKAApDLASRVIAFNG--RYATLPETATTATTIHLIHGGEDRVIDLAWAVSAEE 171
                 33447899999999********************************999677788888888..77788899999************************* PP

         DLH 169 alkaanvdlelkvYpgagHaFand 192
                 al++a+ d+ l++ ++ gHa   +
  CTQ29293.1 172 ALQQAGGDVTLDIVDDLGHAIDDR 195
                 *******************96555 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.12   3.6e+02     132     166 ..      10      39 ..       2      41 .. 0.72
   2 !    7.6   0.0   0.00077       2.3      42      94 ..      80     132 ..      68     146 .. 0.84
   3 !   11.4   0.0   5.4e-05      0.16     143     196 ..     147     200 ..     134     217 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.12
                   HHH-CGGG-----EEEEEEETT-SSS-THHHHHHH CS
  Peptidase_S9 132 spyspldnvkaypplLlihGlaDdrvppaealklv 166
                   sp++p+     ++ lLl+hG  D+ v + +   ++
    CTQ29293.1  10 SPATPA-----QQLLLLFHGVGDNPVSMGQIGSWF 39 
                   444444.....4479*********99998877666 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00077
                   HHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEE CS
  Peptidase_S9  42 qnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaava 94 
                   ++ ++ fi++++++ +++ v++   a+ G S G  +++  +  +pdl + ++a
    CTQ29293.1  80 DAIMPTFIEIVRYWQEKSGVSPLATALIGFSQGAIMSLESIKAAPDLASRVIA 132
                   5566779*********************************9999998666666 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 5.4e-05
                   --EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHHH CS
  Peptidase_S9 143 ypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakve 196
                    + + lihG +D  + +a a+   +aLq++g +v l i  d gH + + + + +
    CTQ29293.1 147 ATTIHLIHGGEDRVIDLAWAVSAEEALQQAGGDVTLDIVDDLGHAIDDRSMQLA 200
                   567779**************************************8875554444 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.31   9.4e+02       3      27 ..      15      39 ..      13      42 .. 0.71
   2 ?    2.1   0.0     0.032        95      65     107 ..      89     133 ..      68     141 .. 0.73
   3 !   10.6   0.0   8.5e-05      0.25     191     234 ..     147     192 ..     136     193 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.31
  Hydrolase_4  3 pkavvvlvHGlaehsgryaelaeaL 27
                 ++++++l+HG+++    + +++ ++
   CTQ29293.1 15 AQQLLLLFHGVGDNPVSMGQIGSWF 39
                 6788999999998766666666555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.032
  Hydrolase_4  65 fvekvkeehpel..plfllGhSmGGliallyllrypdkvaglils 107
                  +v+  +e+++ +     l+G S G++++l+ ++  pd  +++i +
   CTQ29293.1  89 IVRYWQEKSGVSplATALIGFSQGAIMSLESIKAAPDLASRVIAF 133
                  444444444444445689**************9999966677765 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 8.5e-05
  Hydrolase_4 191 tlPllllhGeaDkvvdpeas...relyerlgskdktlklypglyHel 234
                   + + l+hG++D+v+d + +   +e+++++g  d+tl + + l H +
   CTQ29293.1 147 ATTIHLIHGGEDRVIDLAWAvsaEEALQQAGG-DVTLDIVDDLGHAI 192
                  46799***********9988666777777775.**********9976 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   5.6e-06     0.017      71     117 ..      62     117 ..      56     175 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.6e-06
        FSH1  71 raWfrkkde.....kneyegleesldavkdyikengp....fdGiiGFSqGaalaa 117
                 r+Wf  +       +++++ +  ++  +++y++e+       + +iGFSqGa+++ 
  CTQ29293.1  62 RQWFSLQGVteenrQQRIDAIMPTFIEIVRYWQEKSGvsplATALIGFSQGAIMSL 117
                 55665443344445888888999999999999998765557789*********985 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     3e-05     0.089      79     149 ..      63     136 ..       6     219 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
                 B.TTEEETTCCCCCCHCHHHHT...HHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEEEEES-- CS
    Esterase  79 arfyenategpgaeayetfltq...eLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFgsvssfSpi 149
                 ++f++++  ++ +++  +++     e++ + +++  ++p ++a++G+S+G+ ++L     +pd+ ++v++f + 
  CTQ29293.1  63 QWFSLQGVTEENRQQRIDAIMPtfiEIVRYWQEKSGVSPLATALIGFSQGAIMSLESIKAAPDLASRVIAFNGR 136
                 56666655555555555444441114555556777778888***************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1704.35
//
Query:       CTQ29294.1  [L=667]
Description: putative hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-42  146.0   0.3    7.9e-41  139.8   0.3    2.3  1  Helicase_RecD    Helicase
    1.4e-36  125.4   8.4    4.1e-36  123.9   8.4    1.9  1  tRNA_bind_3      tRNA-binding domain
    4.1e-26   91.8   0.1    5.4e-16   58.7   0.0    2.2  2  GNAT_acetyltr_2  GNAT acetyltransferase 2
    1.4e-06   28.2   0.8    3.9e-06   26.7   0.5    1.9  2  AAA_30           AAA domain
    0.00025   20.9   0.0     0.0005   20.0   0.0    1.5  1  DUF1726          Domain of unknown function (DUF1726)
    0.00053   20.4   0.0     0.0012   19.3   0.0    1.6  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00076   19.4   0.0     0.0018   18.2   0.0    1.5  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0033   17.7   0.0       0.81   10.0   0.0    2.9  3  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.013   15.7   0.1      0.037   14.2   0.0    1.9  2  Acetyltransf_1   Acetyltransferase (GNAT) family
        1.1    9.6   7.4      0.079   13.3   0.6    2.5  3  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.8   0.3   4.4e-44   7.9e-41       2     177 .]     195     335 ..     194     335 .. 0.97

  Alignments for each domain:
  == domain 1  score: 139.8 bits;  conditional E-value: 4.4e-44
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglkeeekkkkaekaelrvrkqrieyiapdellklkeqadllvvD 97 
                    +tA+RGRGKSa++G++l +l  e     +vtap++++v+ l +f+                          +++++++apd+ll++ke+a +l+vD
     CTQ29294.1 195 VTAERGRGKSALAGMLLRQLGGE----AIVTAPTRSAVEVLASFA--------------------------GETLRFMAPDALLASKEKAAWLIVD 260
                    8*******************999....79****************..........................6799********************* PP

  Helicase_RecD  98 EAAaiplpllkkllekfkrvvlatTvhGYEGtGrgfslkflkqlkkekkrelreleleepiRyaegdplEkwlndlLlLd 177
                    EAAaip pll++l+++f+r++l+tTv+GYEGtGrgf lkf++ l    + +l++++l++piR+a+g plE+++++lL+++
     CTQ29294.1 261 EAAAIPAPLLRQLVSRFPRTLLTTTVQGYEGTGRGFLLKFCASL----P-HLQSFTLSAPIRWAAGCPLESAISQLLIFN 335
                    *******************************************7....5.89*************************975 PP

>> tRNA_bind_3  tRNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.9   8.4   2.3e-39   4.1e-36       1     118 [.     535     651 ..     535     652 .. 0.98

  Alignments for each domain:
  == domain 1  score: 123.9 bits;  conditional E-value: 2.3e-39
                  HHHHHHHHHHHHHHHHHHHHHHHTS--SS---------HHHHHHHHHHHHS---TCCCHHHHHHHHHH--S--HHHHHHHCS---HHHHHHHCT-SSH CS
  tRNA_bind_3   1 GeaLaqqaeqrlaRdaawlqqiielalplspeadqalneqdwreLagFAfahrPleaslaaLqrLleksslelplLrallqqkqsvaeivkqlglsGr 98 
                  G++Laq+++qrl+Rd +wl+ + e++ pl+  ad++l+++dw e a FAfahrPl+a+l++L+rLl++++++lp+Lr +lq k++ a++++ l+l+Gr
   CTQ29294.1 535 GRQLAQREAQRLQRDEYWLRPWREESAPLPAVADAMLSDEDWLEAASFAFAHRPLAAALGCLNRLLMQADMPLPALRGRLQGKEE-AALCAVLQLTGR 631
                  89**********************************************************************************9.99********** PP

                  HHHHHHHHHHHHHHHHCC-H CS
  tRNA_bind_3  99 KallarlReevaqaLaelda 118
                  Kal ar+R+e+a aL+ lda
   CTQ29294.1 632 KALQARWRREAADALRFLDA 651
                  ****************9987 PP

>> GNAT_acetyltr_2  GNAT acetyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0     3e-19   5.4e-16       2     121 ..     367     479 ..     366     484 .. 0.93
   2 !   31.4   0.2   6.5e-11   1.2e-07     178     226 ..     483     531 ..     476     532 .. 0.91

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 3e-19
  GNAT_acetyltr_2   2 lvallvssHYknsPnDLqllsDaPahklfvLlapkkekkklpevlcvvqvalEGkiskesvknslsrgkrasGdlipwtlsqqfqdeefaslsG 95 
                      +  ll  +HY++sP DL  + DaP  +  +  a          v  ++ +  EG +s+e  ++++++ +r++G+l++  l+ +  +  +a+l G
       CTQ29294.1 367 MYQLLSGAHYRTSPLDLRRMMDAPGQAFRCARAG-------GAVAGALWLVAEGGLSRELSRAVWAGFRRPRGNLVAQSLAAHGGSPLAATLRG 453
                      7789999******************999987763.......3688999999******************************************* PP

  GNAT_acetyltr_2  96 aRivRiAvhpelqkmGYGsralelle 121
                      +R+ RiAvhp  q++G G +++  + 
       CTQ29294.1 454 LRVSRIAVHPTRQREGLGWKMIADIA 479
                      *******************9998775 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 6.5e-11
  GNAT_acetyltr_2 178 ekldylgvsfGltseLlkFWkragfspvylrqtaneltGEhsaimlrsl 226
                         dyl+vsfG t eL +FW+r+gf+ v l + +   +G ++a+ l +l
       CTQ29294.1 483 AGYDYLSVSFGYTAELWRFWQRCGFTLVRLGTHREASSGCYTAMALYPL 531
                      5679***************************************998766 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.5   2.2e-09   3.9e-06       3     114 ..     175     279 ..     173     288 .. 0.81
   2 ?   -2.2   0.0       1.5   2.8e+03      21      38 ..     284     301 ..     279     310 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.2e-09
      AAA_30   3 naeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvd 101
                 +aeQaa++e+l+  +  +a++t+  G GK+ + + l   +++ gg+ i+ Apt  a +vLa     +++t+  +    +  a+ e++  livDEa+ + 
  CTQ29294.1 175 QAEQAAILEQLIRLPPGIAAVTAERGRGKSALAGML---LRQLGGEAIVTAPTRSAVEVLASF---AGETLRFMA-PDALLASKEKAAWLIVDEAAAIP 266
                 689***************************887665...66678999**************54...445554333.33322344567************ PP

      AAA_30 102 tkqlaallkaaek 114
                 +  l++l+++  +
  CTQ29294.1 267 APLLRQLVSRFPR 279
                 *******998765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
      AAA_30  21 avltGpAGtGKttalkal 38 
                 ++++G+ GtG  ++lk  
  CTQ29294.1 284 TTVQGYEGTGRGFLLKFC 301
                 6799*******9999865 PP

>> DUF1726  Domain of unknown function (DUF1726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.8e-07    0.0005       5      78 ..      64     136 ..      61     149 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.8e-07
     DUF1726   5 ekvLGqtydllvldlfealtPnalgrlvetVrGGGliilllppleelkqlytdfhkklvveplteevkkrfnkr 78 
                 + +LG+++  + +d+   ++  a+++l +t r G  ++ll+pp+ ++++  ++   +    p    v+++f +r
  CTQ29294.1  64 KTLLGREVMHAFFDARRGFDVAAMAALSGTLRAGSWLVLLTPPFADWPTRADEDSLRWSDTPD-PIVTPNFVHR 136
                 789**********************************************99866666554444.3577777766 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   6.5e-07    0.0012      26      75 ..     455     508 ..     420     509 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 6.5e-07
                     CTEEEEE-GGGTTSSHHHHHHH..HTT..SEEEEEEEEETHH.....HHHHHHHHTTEE CS
  Acetyltransf_7  26 eitrlaVdpeyrgkGiGraLle..aae..kgiileqlelnae.....kaikfYeklGFe 75 
                        r+aV+p  ++ G+G ++++  a +   g+     +l+ +     +  +f++++GF+
      CTQ29294.1 455 RVSRIAVHPTRQREGLGWKMIAdiA-AdaAGYD----YLSVSfgytaELWRFWQRCGFT 508
                     4456*****************8642.2355532....33111222112245*******6 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     1e-06    0.0018      51     125 ..     453     528 ..     438     529 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1e-06
  Acetyltransf_10  51 gshisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkav..geeqeenGirfvpMek 125
                      g ++s+++V+p  ++ G+g +++ ++ + a   ++  +++   + +  +f +++GF+ v  g  +e++  +++ M++
       CTQ29294.1 453 GLRVSRIAVHPTRQREGLGWKMIADIAADAAGYDYL-SVSFGYTAELWRFWQRCGFTLVrlGTHREASSGCYTAMAL 528
                      4589*************************9777777.9*******************99889999999999999975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00045      0.81       6      45 ..     191     230 ..     187     247 .. 0.78
   2 ?    4.3   0.0     0.025        44      92     123 ..     254     282 ..     236     300 .. 0.79
   3 ?   -2.5   0.0       3.1   5.5e+03     110     131 ..     496     515 ..     486     519 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00045
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfv 45 
                 gi +vt+e G GK+ l+ +ll+ql  ea  + + ++ v+v
  CTQ29294.1 191 GIAAVTAERGRGKSALAGMLLRQLGGEAIVTAPTRSAVEV 230
                 899********************97666555555555554 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.025
      AAA_22  92 ielliiDEaqhlrseealeeLrsllnlsrkgv 123
                  + li+DEa  + ++ +l++L+s++   r+++
  CTQ29294.1 254 AAWLIVDEAAAI-PAPLLRQLVSRFP--RTLL 282
                 468*********.********98876..5555 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.1
      AAA_22 110 eeLrsllnlsrkgvqliLvGtp 131
                  eL +++   r+g++l+  Gt+
  CTQ29294.1 496 AELWRFWQ--RCGFTLVRLGTH 515
                 67888888..********9998 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       5.6     1e+04      82     116 ..       6      42 ..       4      42 .. 0.64
   2 ?   14.2   0.0   2.1e-05     0.037      63     117 .]     456     507 ..     376     507 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.6
                     HHHHHHHHHHTTESEE.EE.EEETT.EHHHHHHHHHTT CS
  Acetyltransf_1  82 lealeerareegikki.vl.aveed.ndaairlYeklG 116
                     l+  ++ + +egi+++ vl   e++  ++a++l e+lG
      CTQ29294.1   6 LNLTAQ-MAREGIRRLlVLsGDESWtLQQAQALRERLG 42 
                     444455.6677798876886555556777777777776 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.1e-05
                     EEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEE.EEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  63 ieslaVspeyrgkGlGsaLlealeerareegikkivl.aveedndaairlYeklGF 117
                     + ++aV+p++++ GlG +++ +++  a    +  + + +         r+++++GF
      CTQ29294.1 456 VSRIAVHPTRQREGLGWKMIADIAADAAGYDYLSVSFgY----TAELWRFWQRCGF 507
                     5689********************988888664444423....34449***99**9 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.6   4.4e-05     0.079      20     121 ..     186     279 ..     175     298 .. 0.59
   2 ?   -1.1   0.0       1.2   2.1e+03      21      45 ..     275     302 ..     260     332 .. 0.75
   3 ?   -2.7   1.2       3.8   6.9e+03      97      97 ..     614     614 ..     531     663 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.4e-05
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde..aesaeleawrekleealaavpelagaea 116
                  +  p++  ++ e+G GKs+l+ +llr+l ++ ++++ ++            ++  +a  e lr ++ +  ++s+e +aw    +ea+a+ ++l +++ 
  CTQ29294.1 186 IRLPPGIAAVTAERGRGKSALAGMLLRQLGGEAIVTAPTRSAVE--------VLASFAG-ETLRFMAPDalLASKEKAAWLI-VDEAAAIPAPLLRQLV 274
                 444468999**********************9544455555554........5555544.4445555552223333333333.2333334444444444 PP

      AAA_16 117 srlle 121
                 sr+ +
  CTQ29294.1 275 SRFPR 279
                 55555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.2
      AAA_16  21 sgrp...elvllsGesGvGKsslvrell 45 
                 s  p     + + G+ G+G   l++ ++
  CTQ29294.1 275 SRFPrtlLTTTVQGYEGTGRGFLLKFCA 302
                 4444335777899999999999987665 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.8
      AAA_16  97 w 97 
                  
  CTQ29294.1 614 L 614
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4629.18
//
Query:       CTQ29295.1  [L=291]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.5e-140  466.5   0.6   3.9e-140  466.3   0.6    1.0  1  Zn_peptidase  Putative neutral zinc metallopeptidase


Domain annotation for each model (and alignments):
>> Zn_peptidase  Putative neutral zinc metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  466.3   0.6  2.2e-144  3.9e-140       1     290 []       1     287 [.       1     287 [. 0.96

  Alignments for each domain:
  == domain 1  score: 466.3 bits;  conditional E-value: 2.2e-144
  Zn_peptidase   1 mrwrgrresdnvedrrassggeg.aGGggkgrslggktgllvlilvlvgllfGvdlsallglgqesstaeaaaqssegtaeeaedeqkefvsvvlad 96 
                   mrw+grresdnvedrr++sg  +  GGgg +r  +gk+g+++li+vlv+ ++Gvdl+++l+ g++  ++++++q  ++ +++ +de+++f+sv+la+
    CTQ29295.1   1 MRWQGRRESDNVEDRRGQSGSPFgGGGGGGFRLPSGKGGIVLLIIVLVAGYYGVDLTGMLT-GEPMPQQQTSTQ--RSISPK-DDEAAKFTSVILAT 93 
                   9********************995556668999****************************.555555544444..457777.9************* PP

  Zn_peptidase  97 tedtWtqifkekgktyqkpklvlfsrvvrsaCGtassatGPfyCPadrkvyldlsffdelkqklgaaGdfaaayviahevGhhvqnllGilekveqa 193
                   tedtW+ if+++g++y +pklvl+++++r++CGt++s++GPfyCPad++vy+dlsf+de+k+klga+Gdfa++yviahevGhhvq+llGi++kv+q+
    CTQ29295.1  94 TEDTWGPIFEKMGRQYPQPKLVLYRGATRTGCGTGQSVMGPFYCPADSTVYIDLSFYDEMKNKLGADGDFAQGYVIAHEVGHHVQKLLGIEPKVRQQ 190
                   ************************************************************************************************* PP

  Zn_peptidase 194 rqgaseaeanqlsvrleLqadcfaGvWansvqqkgllekgdieealnaakaiGddtLqkqsqgrvvPdsfthGtsqqrqrWfkrGfesGdlaqcdtf 290
                   +q+a++aean+lsv++eLqadcfaGvW++++qq+ +le+gd++ealnaa+aiGdd+Lq+qsqgrvvPdsfthGts+qr++WfkrGf+sGd+aqc+tf
    CTQ29295.1 191 QQHATQAEANRLSVKMELQADCFAGVWGHNMQQQDILETGDLQEALNAAEAIGDDRLQQQSQGRVVPDSFTHGTSKQRYTWFKRGFDSGDPAQCNTF 287
                   ************************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2252.95
//
Query:       CTQ29296.1  [L=237]
Description: phosphoribosylaminoimidazole-succinocarboxamide synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-60  204.0   0.0    3.3e-60  203.8   0.0    1.0  1  SAICAR_synt    SAICAR synthetase
  ------ inclusion threshold ------
      0.035   13.1   0.0      0.051   12.6   0.0    1.2  1  Peptidase_M42  M42 glutamyl aminopeptidase


Domain annotation for each model (and alignments):
>> SAICAR_synt  SAICAR synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.8   0.0   3.7e-64   3.3e-60       2     251 ..       7     231 ..       6     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 203.8 bits;  conditional E-value: 3.7e-64
                  EEE-SSEEEEE-SSTTEEEEEEESEEEECCCTEEEEETTHHHHHHHHHHHHHHHHHH..--BSEEEE.....-SSSEEEEE-EEEESEEEEEEEE--H CS
  SAICAR_synt   2 lyeGKvrdvYeledddklllvakDrisAfdvvlkeeipgKGkvltqlsafwfeklek..ipnhliksldpeqlegrsmlvkklkmlpvEvvvRgyltG 97 
                  ly+GK++ vY+++++d l+l++++++sA d+++ e++++KG v++++++f+++kl++  ip+++ +      l+++++lvkkl+m+pvE+vvR+ ++G
   CTQ29296.1   7 LYRGKAKTVYSTDNPDLLVLEFRNDTSAGDGARIEQFDRKGMVNNKFNHFIMSKLAEagIPTQMEAL-----LSDTECLVKKLDMVPVECVVRNRAAG 99 
                  89******************************************************668***99955.....9************************* PP

                  HH.......HH....HH..T--TT-EEEEEEEEEEE--CCCT.S-EE-HHHHH.HTT..-HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEE CS
  SAICAR_synt  98 slwkeykksgkvcgirlpeglkegeklpepiftpstKaeegehDeniseeevvealg..teeeaeeieelalavyekaaelaaergiilvDtKlEFGl 193
                  sl        k    rl  g++eg +l++p+f++++K++++ hD++++++ +  ++g  ++e++++++el+ + ++ +++l+++ g+ilvD+KlEFGl
   CTQ29296.1 100 SL-------VK----RL--GIEEGIELNPPLFDLFLKNDAM-HDPMVNDSYCE-TFGwvSKENLARMRELTYKANDVLKKLFDDAGLILVDFKLEFGL 182
                  **.......89....99..*********************8.7*******997.9999**************************************** PP

                  ETTTTEEEEES--.STTTEEEEETTT.....GGGB-STHHHHTT-STHHHHHHHHHHH CS
  SAICAR_synt 194 deedgelvLaDevltpDssRfwdaetyeegkeqeslDKqfvRdwleeveekwkekler 251
                     +ge+vL+De+ +pD sR+wd++t       +++DK+++R+ l+   e+++e+++r
   CTQ29296.1 183 F--KGEVVLGDEF-SPDGSRLWDKNT------LDKMDKDRFRQSLGGLIEAYEEVAHR 231
                  9..6*********.************......99*******************99875 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.7e-06     0.051     205     252 ..      33      77 ..      22      95 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.7e-06
                    STTS-CEEEEEETTCCSHHHHHHHHHHHHHHTT--EEEEEESSSSSTH CS
  Peptidase_M42 205 klgkGpvirvkDasgiyhpklrkkllelAkknnipyqlevlsgggtDA 252
                    + g+G+ i  +D++g++++k++++++   ++++ip q+e      +D+
     CTQ29296.1  33 SAGDGARIEQFDRKGMVNNKFNHFIMSKLAEAGIPTQME---ALLSDT 77 
                    38************************************6...444455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1925.89
//
Query:       CTQ29297.1  [L=344]
Description: lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.8e-108  362.4   0.8   2.1e-108  362.2   0.8    1.0  1  Lipoprotein_18  NlpB/DapX lipoprotein


Domain annotation for each model (and alignments):
>> Lipoprotein_18  NlpB/DapX lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.2   0.8  1.1e-112  2.1e-108       2     319 .]      41     342 ..      40     342 .. 0.99

  Alignments for each domain:
  == domain 1  score: 362.2 bits;  conditional E-value: 1.1e-112
                     GGGS---------TTS---TS-SST-----...-S-S--GGGSB-S--------STTEEEEEETTEEEEEECGS.CC.TSHHHHHHHHHHHTT-- CS
  Lipoprotein_18   2 YleapklkslkvPagltlPeqnteYdipevkekaekgavGkkldirpPaqvlplveGsrveessdeatlllessdeskdelweqvasvlaeknip 96 
                     Yl+a++l +l++Pag++lP q ++Y+ip++   +++gavGk+ldirpPaq+l+lv+G+r+++++d+atl++e+ + s  +lw+qv+s+l++kn+ 
      CTQ29297.1  41 YLQASPLSELHAPAGMILPIQVGDYNIPVA---NSTGAVGKALDIRPPAQPLALVSGARTQFNGDTATLMVENGR-S-GSLWAQVTSILQSKNYV 130
                     ******************************...99***************************************4.5.6**************** PP

                     EEEEETTTTEEEEEEEE.......EE-TTGSSEEEEEEE..EEEEEESSEEEEEEEEEEEEETTEE..E--HHHHHHHHHHHHHHHHHHHHHHHH CS
  Lipoprotein_18  97 iakeddaqgvleTdwvenqevveswsraDedvelrqrYrfrievkpqgrqaalvvslldleegektkevlspedkqryeadmlnqviseldkkre 191
                     iak+dda+++l+Tdwve       w+r Ded+++r+rY+  i+vkpqg+q+a+vv+l++le+ +k+  v +p++ qry++ mln ++++ld + +
      CTQ29297.1 131 IAKRDDASQTLNTDWVE-------WNRLDEDQQYRGRYQ--ISVKPQGYQQAVVVKLVNLEQAGKP--VADPASLQRYSTAMLNVISEGLDMNAT 214
                     *****************.......***************..**********************888..*************************** PP

                     HHHHHHHHHXXSXXXEEEEETTTSXEEEEEESXHHHHHHHHHHHHHHTTEEEEEEETTTTEEEEEEXXXXHHHHHHHTSXXXXXXSEEEEEEEEE CS
  Lipoprotein_18 192 qaeaakaarqskgisvqlgadenglpvlivrapfdvvWerLplvLpklgfevedrdrsqGlyevkYkepssgfWsslgakeldlkegeYrlqlgd 286
                     +a++a+++++  +++vq++ad++glp+l+vrapf+ vW+rLp +L+k+g++v+d++rsqG++ ++Yk+ s++ W++lga +++l +g+Y+lq+gd
      CTQ29297.1 215 SAQNAAQRSAGATFDVQSAADDTGLPMLVVRAPFNLVWQRLPGALEKVGMKVTDSTRSQGSMALTYKPLSDSSWQELGARDPQLVSGDYKLQVGD 309
                     *********************************************************************************************** PP

                     ETTEEEEEEEXTTSSBXXHHHHHHHHHHHHHHH CS
  Lipoprotein_18 287 lgnrtsitllDeegkplsqeevealvavlaaal 319
                     l+nr+s++++D++g++l+q++++alvav++aa+
      CTQ29297.1 310 LDNRSSLQFIDPKGHTLTQSQNDALVAVFQAAF 342
                     *******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 3028.39
//
Query:       CTQ29298.1  [L=292]
Description: dihydrodipicolinate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-121  404.2   0.1   2.2e-121  404.0   0.1    1.0  1  DHDPS     Dihydrodipicolinate synthetase family


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.0   0.1  1.2e-125  2.2e-121       2     288 ..       2     288 ..       1     289 [. 0.99

  Alignments for each domain:
  == domain 1  score: 404.0 bits;  conditional E-value: 1.2e-125
                 -SEEEEE----B-TTSSB-HHHHHHHHHHHHHCT-SEEEESSCCCTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE---SSHHHHHHHHHCCCCCT-SEE CS
       DHDPS   2 fsgiitalvtpfdedgkldkealrklieflinkgvdglvvaGttGEsatlsteekeqlveiaveaakgripviagvGsnstseaiklakkaeeaGadgv 100
                 f+g+i+alvtp+de+g++++ +l+kli++++++g++++v++GttGEsatls+ee+ ++v+++ e+a+gripviag+G+n+t+eai+l+k+++++G+ g+
  CTQ29298.1   2 FTGSIVALVTPMDENGNVCRTSLKKLIDYHVANGTSAIVSVGTTGESATLSHEEHGDVVMMTLELADGRIPVIAGTGANATAEAISLTKRFNDSGVVGC 100
                 89************************************************************************************************* PP

                 EEE---SS---HHHHHHHHHHHHHCHSS-EEEEE-HHHHSHHHHHHHHHHHHTSTTEEEEEE-SS-CTHHHHHHCCCSTTSEEEES-GGGHHHHHHTT- CS
       DHDPS 101 lavtPYYnkpsqeglyqhfkaiieatdlpvilYnvpsrtgadlspetvkrLaelenivgvKeavgdleevikikkevgkdlviysGddelllsalslGa 199
                 l+vtPYYn+p+qegl qhfkai+e+tdlp+ilYnvpsrtg+d+ petv+rLae++nivg+Kea+g+l++v +ik+ v++d++++sGdd++  ++++lG+
  CTQ29298.1 101 LTVTPYYNRPTQEGLFQHFKAIAEHTDLPQILYNVPSRTGCDMLPETVGRLAEIKNIVGIKEATGNLSRVHQIKELVSDDFILLSGDDATGMDFMQLGG 199
                 *************************************************************************************************** PP

                 SEEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCCCCSCCHHHHHHHHCTTSSSBB.--TTS--S-HHHHHHHHHHHHH CS
       DHDPS 200 dGvisvtsniagermrqlikalkeGdlaeaaelnekllplikilfaepnvilvktalellGlvveatlrkPltpleeeekeeleallka 288
                  Gvisvt+n+a+++m+++++++ +G++aea+++n++l+pl+ +lf+epn+i+vk++++ lGlv+++tlr P+tp+++  +e++ a+lk+
  CTQ29298.1 200 VGVISVTANVAAREMADMCRLALAGQFAEARAINQRLMPLHTKLFVEPNPIPVKWGCKALGLVATDTLRLPMTPITDHGREAVTAALKH 288
                 ***************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2283.78
//
Query:       CTQ29299.1  [L=188]
Description: DNA-binding transcriptional repressor, regulatory protein accessory to GcvA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-26   91.1   0.1      2e-24   85.4   0.0    2.6  2  ACT_6     ACT domain
    4.1e-06   26.5   0.0     0.0024   17.6   0.0    2.3  2  ACT       ACT domain
    4.3e-05   24.0   0.0      0.087   13.4   0.0    3.1  3  ACT_4     ACT domain


Domain annotation for each model (and alignments):
>> ACT_6  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   3.3e-28     2e-24       1      76 []       7      82 ..       7      82 .. 0.98
   2 ?    3.2   0.0     0.015        88      10      32 ..     103     125 ..      94     173 .. 0.73

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 3.3e-28
       ACT_6  1 eillitvtGpdrpGltasLtsvlaefgvnilDieqavihgrlsLgllvsgpedalarlekaLlflakelgltvefk 76
                ++l+it++G+drpG+++ +t++++ +g+ni D+++a++++++++++l+sg+++a++ +e++L+ + +el+l +++k
  CTQ29299.1  7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGDEFTFIMLLSGSWNAINLIESTLPLKGAELELLIVMK 82
                69*********************************************************************99986 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.015
       ACT_6  10 pdrpGltasLtsvlaefgvnilD 32 
                 pd p ++ ++t+++  ++ ni++
  CTQ29299.1 103 PDSPHIIERFTALCDTWNMNIAE 125
                 89999999999999999999876 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0     0.001         6       5      29 ..      13      37 ..       8      42 .. 0.78
   2 !   17.6   0.0     4e-07    0.0024       2      66 ..      97     165 ..      96     166 .. 0.97

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.001
                EEEESSTTHHHHHHHHHHHTTSEEE CS
         ACT  5 vgvpDrPGlLarvfgaladrgiNid 29
                 + +DrPG+ + +++ ++  g Ni+
  CTQ29299.1 13 ALGADRPGIVNTITRHVSSCGCNIE 37
                5789**********97777777765 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 4e-07
                 EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTT....ECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT   2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedk....vagivfvvivvdeedleevlealkkle 66 
                 ++ v+vpD P+++ r+++++   + Ni+ + +r+        +  i ++ + + +++++++++a+k+l+
  CTQ29299.1  97 WVQVEVPDSPHIIERFTALCDTWNMNIAELVSRTQPGDgdsaQLFIQITAHSPATQNAANIEQAFKALC 165
                 689***************************************************************997 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.5e-05     0.087       9      40 ..      11      42 ..       6      54 .. 0.83
   2 !    4.6   0.0    0.0086        51       6      43 ..      95     132 ..      92     148 .. 0.84
   3 ?    2.4   0.1     0.041   2.5e+02      18      46 ..     159     187 ..     152     188 .] 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.5e-05
       ACT_4  9 leveaedrkglLaditqviseekanivsvnak 40
                ++  + dr+g+++ it+ +s+++ ni++ ++ 
  CTQ29299.1 11 ITALGADRPGIVNTITRHVSSCGCNIEDSRLA 42
                677899********************987765 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0086
       ACT_4   6 tvrleveaedrkglLaditqviseekanivsvnaktrk 43 
                 tv+++ve+ d+++++ + t+++   ++ni ++ ++t+ 
  CTQ29299.1  95 TVWVQVEVPDSPHIIERFTALCDTWNMNIAELVSRTQP 132
                 699**************************999988854 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.041
       ACT_4  18 glLaditqvisee.kanivsvnaktrkkdg 46 
                  +++ +++ ++++  +niv+++ ++++ dg
  CTQ29299.1 159 QAFKALCTELNAQgSINIVNYSQHDEQ-DG 187
                 567778889999989********9987.65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1502.34
//
Query:       CTQ29300.1  [L=156]
Description: thiol peroxidase, thioredoxin-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-39  132.7   0.0    7.6e-39  132.5   0.0    1.1  1  AhpC-TSA       AhpC/TSA family
    5.3e-27   94.3   0.0    6.3e-27   94.1   0.0    1.0  1  Redoxin        Redoxin
    8.1e-06   25.8   0.0    1.3e-05   25.2   0.0    1.3  1  SCO1-SenC      SCO1/SenC
    8.5e-05   22.6   0.0    0.00013   22.0   0.0    1.4  1  AhpC-TSA_2     AhpC/TSA antioxidant enzyme
    0.00041   20.0   0.0    0.00044   19.9   0.0    1.1  1  DUF899         Bacterial protein of unknown function (DUF899)
     0.0053   16.3   0.0      0.008   15.7   0.0    1.3  1  GSHPx          Glutathione peroxidase
  ------ inclusion threshold ------
       0.11   12.9   0.0       0.15   12.4   0.0    1.3  1  Thioredoxin_8  Thioredoxin-like


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5   0.0   2.9e-42   7.6e-39       2     123 ..       7     134 ..       6     135 .. 0.99

  Alignments for each domain:
  == domain 1  score: 132.5 bits;  conditional E-value: 2.9e-42
                 TSB----EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHHHHTT- CS
    AhpC-TSA   2 gdkapdfelknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkvakaygv 100
                 gd ap+f+l+++dge+v+l+d++g+ v+++fypk+ +p+Ct +++ l+++++++k++gvev+g+s+d+pe++ +f+eke lnf+llsDe+++v++++gv
  CTQ29300.1   7 GDIAPKFSLPDQDGEEVNLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDDLKKAGVEVLGISTDKPEKLSRFAEKELLNFTLLSDENHQVCEQFGV 105
                 99************************************************************************************************* PP

                 EETT......TTECSCEEEEE-TTSBEEE CS
    AhpC-TSA 101 lkee......kglalratfvidkegkiry 123
                 + e+      + +  r +f+id++gki++
  CTQ29300.1 106 WGEKsfmgktYDGIHRISFLIDADGKIEH 134
                 ***************************97 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.0   2.5e-30   6.3e-27       1     133 [.       5     138 ..       5     149 .. 0.90

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 2.5e-30
                 -TTSBB---ECCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHH.HHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHHTT-TSEEEE-TTSHHH CS
     Redoxin   1 kagdkaPdftlplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehp.yleklaellkekgvdvvavvadndafvkefwgkeglkfpvlsDgsaaft 98 
                 kagd aP+f+lp+  +dg++v+l +f+g++v+v+f+p a +P C+ +++   ++ ++l k+ gv+v+++++d+ +  ++f++ke l+f++lsD+++++ 
  CTQ29300.1   5 KAGDIAPKFSLPD--QDGEEVNLTDFQGQRVLVYFYPKAMTPGCTVQACgLRDNMDDL-KKAGVEVLGISTDKPEKLSRFAEKELLNFTLLSDENHQVC 100
                 699*9******99..**********************************555555666.**************************************** PP

                 HHTT-TTEEE.GGG...EEE-E.EEEEEETTEEEEEEES CS
     Redoxin  99 kalGlrleedaseg...lrtpr.yavidedgkvvyleve 133
                 +++G  + e+  +g    ++ r +++id+dgk+ +++  
  CTQ29300.1 101 EQFG-VWGEKSFMGktyDGIHRiSFLIDADGKIEHVFDD 138
                 ****.67888777799966666379**********9865 PP

>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   4.9e-09   1.3e-05       3     133 ..      12     131 ..      10     132 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 4.9e-09
   SCO1-SenC   3 pFelvdqdgeavteedlegkpslvffgFthCpdvCpttlanmaevldalgeeaekvqplfiTvDPerDtpevlkeyleafdpriigltGskeeiakaak 101
                 +F+l dqdge+v+ +d++g+ +lv+f     +  C+++   +++ +d+l++++  v++l i+    +D pe+l +++e+   +++ l++++ +   +++
  CTQ29300.1  12 KFSLPDQDGEEVNLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDDLKKAG--VEVLGIS----TDKPEKLSRFAEKELLNFTLLSDENHQ---VCE 101
                 7***************************************************5..5556665....79**********888888888777665...688 PP

   SCO1-SenC 102 efrvyvekvedeesdytvdHsssvyLvdpdgr 133
                 +f+v  ek+   ++ y   H    +L+d+dg+
  CTQ29300.1 102 QFGVWGEKSFMGKT-YDGIHRI-SFLIDADGK 131
                 99999888888888.7777754.578888886 PP

>> AhpC-TSA_2  AhpC/TSA antioxidant enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   5.2e-08   0.00013       2      55 ..      53     107 ..      52     151 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 5.2e-08
  AhpC-TSA_2   2 Lsrdkpeldaagvklvaigigdp.sakkFvkltgfpfelyvDpsaklyqalglkr 55 
                 L++  ++l++agv++ +i+ ++p ++ +F++ +  +f l+ D++ ++ +++g++ 
  CTQ29300.1  53 LRDNMDDLKKAGVEVLGISTDKPeKLSRFAEKELLNFTLLSDENHQVCEQFGVWG 107
                 778899*****************55***************************984 PP

>> DUF899  Bacterial protein of unknown function (DUF899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.7e-07   0.00044      82     176 ..      40     137 ..       4     152 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.7e-07
      DUF899  82 eegCpgCslladhvdgalahLeardvtlavvsraplekleaykrrmGwtlpwvssaesdfnrdfnvsleeeq...aseelpglsvflrddgrvfhtYs 176
                 ++  pgC++ a  +  ++ +L++++v +  +s    ekl ++ ++   ++ + s+ + ++ ++f+v  e++    + + ++ +s  +  dg++ h + 
  CTQ29300.1  40 KAMTPGCTVQACGLRDNMDDLKKAGVEVLGISTDKPEKLSRFAEKELLNFTLLSDENHQVCEQFGVWGEKSFmgkTYDGIHRISFLIDADGKIEHVFD 137
                 45569************************************************************988887644456667777777778899999875 PP

>> GSHPx  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.1e-06     0.008       4      95 ..      13     105 ..      11     116 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.1e-06
                 BEEEBTTSSEEEGGGGTTSEEEEE..EEESSSTTHHHHHHHHHHHHHHGGGTEEEEEEEE-TTTT---S-GGGHHHTSSHTTT-SSEEB--BBS CS
       GSHPx   4 lsakdidgekvkleklrgkvvliv..nvaskCglteqykeleelqkrykdkglvilgfPCnqfgkqepgsdeeikkfrqgkyevtfellekiev 95 
                 +s  d+dge+v+l  ++g+ vl+     a + g t q   l++    +k+ g+ +lg   ++  k    +++e+ +f+    + + ++ e+  v
  CTQ29300.1  13 FSLPDQDGEEVNLTDFQGQRVLVYfyPKAMTPGCTVQACGLRDNMDDLKKAGVEVLGISTDKPEKLSRFAEKELLNFTLL-SDENHQVCEQFGV 105
                 777899**************99862257999***************************9999999999999998777654.3445555555555 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     6e-05      0.15       4      81 ..      33     106 ..      30     132 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6e-05
                    EEEEE--SSSHH.HHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT-HHHHTT-S--T CS
  Thioredoxin_8   4 vlLyfgaswcpp.ckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsvpfddkkrnklkkkynvk 81 
                    vl+yf+ +   p c+     l + +++lk k +ve++ +s dk  e+  ++ +k     l+++  ++++++++++++v 
     CTQ29300.1  33 VLVYFYPKAMTPgCTVQACGLRDNMDDLK-KAGVEVLGISTDKP-EKLSRFAEKE---LLNFTLLSDENHQVCEQFGVW 106
                    7778877755554999999*********9.7************6.8888888888...999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1179.29
//
Query:       CTQ29301.1  [L=353]
Description: putative permease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-84  283.4  41.3    2.6e-84  283.2  41.3    1.0  1  AI-2E_transport  AI-2E family transporter


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.2  41.3   1.4e-88   2.6e-84       3     326 ..      20     345 ..      18     346 .. 0.96

  Alignments for each domain:
  == domain 1  score: 283.2 bits;  conditional E-value: 1.4e-88
  AI-2E_transport   3 lilvllllllalypfiselllplliAlvlayllnpvvkfLkkrgvkrvlavllvlllllvllvllvlllvplliaqltqlvkslpayidslqni 96 
                      ++lv+ll ++++ +f+s ll pll+A+vlayll++++ +L++ g++r++a++lvl+l++++l ll ++++p++++q ++l++++p ++++l+++
       CTQ29301.1  20 ALLVILLAGFGIMFFFSGLLAPLLVAIVLAYLLEWPTVRLERIGLSRTWATSLVLILFVGILLLLAFVVLPVAWQQGIYLIRDMPGMLNKLSDF 113
                      6899****************************************************************************************** PP

  AI-2E_transport  97 lnelpslleelen...liqalkqslskilsnilssilnsllsllasllglilslvlvllllffllldgeklrqgilkllpervrervkailrel 187
                        +lp++++ l +    ++  +++++++l+  +s +  sl sl++ l+ l+++lvlv+l++ffll+d+e++++ ++++lp++ r  + ++++e+
       CTQ29301.1 114 AATLPRRYPALMDagiIDAMAENMRTRMLTVGDSVVKYSLASLVGLLT-LAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRN-RGLAGQVWKEM 205
                      ***********7369888888999999999999999999999999988.****************************99999.*********** PP

  AI-2E_transport 188 ektlsgylrgqvlvaliigvlvfigllilgvpyalllailvglanliPyiGavivlipiaiialltgg..ikevlivlivvllvqliegnileP 279
                      ++++++y+rg+vl +++++v+++ig+ ++g++y+llla+lvg++ liPyiGa++v+ip ++ ++l++   ++e++ +++v+l++q ++gn+l P
       CTQ29301.1 206 NQQITNYIRGKVLEMIVVSVATWIGFILFGLNYSLLLAVLVGFSVLIPYIGAFVVTIP-VVGVALFQFgaGTEFWSLFAVYLIIQGLDGNLLVP 298
                      **********************************************************.56666665559************************ PP

  AI-2E_transport 280 klmgkrlglhplvillsllaggklfGlvGlilavpltavikaileay 326
                       l++++++lhplvi+ls++++g l+G++G+++a+pl+++ika+++a+
       CTQ29301.1 299 VLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAW 345
                      ********************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 2648.29
//
Query:       CTQ29302.1  [L=487]
Description: putative peptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-27   94.3   0.1    1.5e-26   93.4   0.1    1.5  1  Peptidase_M48  Peptidase family M48
    5.8e-14   52.4  10.5    1.4e-07   31.9   0.3    3.9  3  TPR_19         Tetratricopeptide repeat
    2.6e-06   27.8  12.4      0.027   15.3   0.0    4.8  3  TPR_14         Tetratricopeptide repeat
    0.00067   20.3   8.9       0.19   12.4   0.0    3.5  3  TPR_16         Tetratricopeptide repeat
    0.00081   19.3   1.5       0.58   10.4   0.1    4.1  3  TPR_2          Tetratricopeptide repeat
     0.0015   18.9  14.9      0.023   15.3   0.1    5.0  4  TPR_4          Tetratricopeptide repeat
      0.004   17.7   4.5        1.9    9.3   0.2    4.3  3  TPR_6          Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.012   15.8   0.2      0.012   15.8   0.2    2.3  2  DUF4157        Domain of unknown function (DUF4157)
      0.017   14.8   0.8         10    5.9   0.1    3.4  3  TPR_11         TPR repeat
      0.033   14.4   0.5        5.2    7.4   0.1    3.2  3  ANAPC3         Anaphase-promoting complex, cyclosome, subunit
      0.066   12.8   0.1       0.12   12.0   0.1    1.3  1  DUF2268        Predicted Zn-dependent protease (DUF2268)
       0.11   11.9   0.0       0.19   11.1   0.0    1.3  1  RPN1_RPN2_N    RPN1/RPN2 N-terminal domain
       0.12   12.5   0.1       0.47   10.6   0.0    1.9  2  GerPE          Spore germination protein GerPE
        0.2   12.0   0.7         18    5.9   0.0    3.9  3  TPR_8          Tetratricopeptide repeat
       0.34   11.2   7.9        6.5    7.1   0.8    4.0  3  TPR_12         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.1   1.2e-29   1.5e-26      10     195 ..      79     259 ..      70     260 .. 0.90

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 1.2e-29
                    HHHHHHHHTT-..-EEEEEEE-GGGT-EEEEESSS-EEEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTT-S CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48  10 vveelakeaglpkpltkvyvvnspkrNAFalgggknkrivltdgLlkqllseeelaaVlGHElGHikhrhsvvslivsllasillllglallisra 105
                       +l++ a+    + ++y +n++++NAFa  gg    +vl+++L+    +e+ela V++HE++H+++rh ++ +  +  +  l  +g++  i  a
     CTQ29302.1  79 LGMRLVAHANSVRTPFHFYLINNDQINAFAFFGG---NVVLHSALFRYSDNESELASVMAHEISHVTQRHLARAMEDQKRNAPLTWVGALGSILLA 171
                    566778888888999*******************...9**************************************99999999999998888777 PP

                    HHHHHTT--S---HHHHHHHHHHTTHHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHHHHS-SS--HHHHHHHHHH- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 106 eedaagafldalavliglliillflalSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrsellstHPplleRiqalkel 195
                     +  ++++++ +++l+g  + +  + ++R++E +AD++g+++l+r++ +++a+  +  +l+ +++++    e+l tHP  ++R++ ++++
     CTQ29302.1 172 MASPQAGMAALTGTLAGTQQGM--ISFTRQNEEEADRIGIQVLQRSGFDPQAMPMFMGKLLDESRYSTRPPEMLLTHPLPESRLADARNR 259
                    7777777777777777766653..6****************************************999999**************99876 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.8   1.8e-07   0.00021      24      61 ..     308     345 ..     298     352 .. 0.87
   2 !   31.9   0.3   1.1e-10   1.4e-07       2      67 ..     354     418 ..     353     419 .. 0.95
   3 ?    3.2   0.2      0.11   1.3e+02      39      52 ..     441     454 ..     424     471 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.8e-07
      TPR_19  24 naearllLAeallalgqldeAealLdalpeedpddary 61 
                 + +a+++ A + ++++++d+A+++L++l+++dp++a y
  CTQ29302.1 308 QHAAQYGRALLAMESNNFDQARKTLQPLLNADPQNAWY 345
                 67899999*************************96544 PP

  == domain 2  score: 31.9 bits;  conditional E-value: 1.1e-10
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAk 67 
                 l +++  +A+++l++a  e   n+ ++l+LA+all+ gq+ eA  +L+++   ++ d + ++LlA+
  CTQ29302.1 354 LGQKKTSDAINRLKNA-RELRTNPVLQLNLANALLQGGQPGEAATILNRYTFTYKEDGNGWDLLAQ 418
                 789999*********9.88899*******************************************8 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.11
      TPR_19  39 gqldeAealLdalp 52 
                 gql++A+ lL+ + 
  CTQ29302.1 441 GQLEQAISLLSSAS 454
                 55555555554443 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.5   0.00011      0.13       2      38 ..     310     346 ..     309     352 .. 0.85
   2 !   15.3   0.0   2.3e-05     0.027       3      43 ..     378     418 ..     376     419 .. 0.93
   3 ?    4.3   0.9     0.074        88       4      30 ..     430     456 ..     427     482 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeaw 38 
                 +a++ +a + +++ ++d+A++ l+ +l ++P++a+++
  CTQ29302.1 310 AAQYGRALLAMESNNFDQARKTLQPLLNADPQNAWYL 346
                 5777788888899*******************99876 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.3e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 ++l la all+ G+p eA+++l+r+  ++ +d   w llaq
  CTQ29302.1 378 LQLNLANALLQGGQPGEAATILNRYTFTYKEDGNGWDLLAQ 418
                 67889***************************999999998 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.074
      TPR_14   4 llalaeallalGdpdeAiallrralal 30 
                 l+a+ae ++  G++++Ai ll  a ++
  CTQ29302.1 430 LAARAESMALVGQLEQAISLLSSASSQ 456
                 7899999999***********999775 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.5   0.00025       0.3       1      36 [.     313     343 ..     313     349 .. 0.85
   2 !   12.4   0.0   0.00016      0.19       8      60 ..     354     402 ..     351     409 .. 0.89
   3 ?   -2.3   1.4         6   7.2e+03       5      53 ..     420     465 ..     416     471 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00025
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeA 36 
                 + +a++a++++++d+A++ l+ +l +d   P+   A
  CTQ29302.1 313 YGRALLAMESNNFDQARKTLQPLLNAD---PQ--NA 343
                 6789***********************...86..33 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00016
      TPR_16   8 lragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraa 60 
                 l +++  dA+++l+ a++++   P+    +l+l++a+l+ g   eAa  ++++
  CTQ29302.1 354 LGQKKTSDAINRLKNARELR-TNPV---LQLNLANALLQGGQPGEAATILNRY 402
                 6799999************9.8888...9******************777776 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 6
      TPR_16   5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53 
                   al ++d + Aa+a   al  +    + a +ll ++ +  ++g l+ A
  CTQ29302.1 420 EGALGNRDQELAARAESMALVGQ---LEQAISLLSSASSQVKLGSLQQA 465
                 55555555555555544444444...44455555555555555555555 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00049      0.58       3      34 .]     311     342 ..     309     342 .. 0.88
   2 ?    4.0   0.0     0.053        64       5      23 ..     380     398 ..     376     402 .. 0.85
   3 ?    0.6   0.0      0.68   8.1e+02       4      24 ..     430     450 ..     427     454 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00049
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 a y ++l++++++++++A++ ++  l  dP+n
  CTQ29302.1 311 AQYGRALLAMESNNFDQARKTLQPLLNADPQN 342
                 889*****************999888888876 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.053
       TPR_2   5 ynlGlayyklgdyeeAlea 23 
                  nl++a+++ g++ eA+  
  CTQ29302.1 380 LNLANALLQGGQPGEAATI 398
                 69**************865 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.68
       TPR_2   4 lynlGlayyklgdyeeAleaf 24 
                 l +++++ +  g++e+A+ ++
  CTQ29302.1 430 LAARAESMALVGQLEQAISLL 450
                 66899999999******9876 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.023        28       2      24 ..     310     332 ..     309     334 .. 0.89
   2 !   15.3   0.1     2e-05     0.023       1      25 [.     376     400 ..     376     401 .. 0.91
   3 ?   -0.3   0.8       2.1   2.5e+03       6      19 ..     415     428 ..     414     428 .. 0.89
   4 ?    4.9   0.3     0.043        51       5      23 ..     431     449 ..     430     451 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.023
       TPR_4   2 rallaLArallalGdldeArall 24 
                 +a++++A ++ +  ++d+Ar +l
  CTQ29302.1 310 AAQYGRALLAMESNNFDQARKTL 332
                 799****************9766 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2e-05
       TPR_4   1 arallaLArallalGdldeAralle 25 
                 ++++l+LA all+ G++ eA+++l 
  CTQ29302.1 376 PVLQLNLANALLQGGQPGEAATILN 400
                 6789*****************9986 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 2.1
       TPR_4   6 aLArallalGdlde 19 
                 +LA+a  alG+ d+
  CTQ29302.1 415 LLAQAEGALGNRDQ 428
                 599*******9997 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.043
       TPR_4   5 laLArallalGdldeAral 23 
                 +a+A+ +++ G+l++A  l
  CTQ29302.1 431 AARAESMALVGQLEQAISL 449
                 79**************665 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.2    0.0016       1.9       2      32 ..     311     341 ..     310     342 .. 0.85
   2 ?    5.5   0.0     0.026        32       3      26 ..     379     402 ..     377     403 .. 0.91
   3 ?    1.4   0.1      0.53   6.4e+02       7      24 ..     434     451 ..     430     466 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPd 32 
                 A+y +al+  + ++ d+A+++l+ l++  P+
  CTQ29302.1 311 AQYGRALLAMESNNFDQARKTLQPLLNADPQ 341
                 8999999999866**********88887776 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.026
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerl 26 
                 +++la +++++g++ +A ++l+r 
  CTQ29302.1 379 QLNLANALLQGGQPGEAATILNRY 402
                 589*******99*********985 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAleale 24 
                 a+s+   g+ ++A+ +l 
  CTQ29302.1 434 AESMALVGQLEQAISLLS 451
                 7778875699***99886 PP

>> DUF4157  Domain of unknown function (DUF4157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   0.2   9.9e-06     0.012      34      75 ..     102     144 ..      99     148 .. 0.79
   2 ?   -2.9   0.1         7   8.4e+03      32      57 ..     179     201 ..     174     208 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.9e-06
     DUF4157  34 ralgAqAfTlgndivfaag..eyqpesaagrellaHELtHvvqq 75 
                 ++++A Af +g ++v+ +   +y+ ++++ ++++aHE++Hv q+
  CTQ29302.1 102 DQINAFAF-FGGNVVLHSAlfRYSDNESELASVMAHEISHVTQR 144
                 57788888.77777774433389999999*************97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7
     DUF4157  32 aaralgAqAfTlgndivfaageyqpe 57 
                 +a+  g+ A T++  i f +++   e
  CTQ29302.1 179 MAALTGTLAGTQQGMISFTRQN---E 201
                 5666778899999999994333...2 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1    0.0084        10       5      30 ..     320     345 ..     316     346 .. 0.92
   2 ?    4.9   0.0     0.017        21       7      40 ..     356     388 ..     351     390 .. 0.85
   3 ?   -0.3   0.0      0.73   8.8e+02       8      20 ..     441     453 ..     440     456 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0084
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaea 30 
                 +e +++++A + ++  l+ dP+na+ 
  CTQ29302.1 320 MESNNFDQARKTLQPLLNADPQNAWY 345
                 5789********************85 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.017
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 q k  +Ai+++k+A +l+ +n+ + +nL++a+++
  CTQ29302.1 356 QKKTSDAINRLKNARELR-TNPVLQLNLANALLQ 388
                 667889***********7.899999999999986 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.73
      TPR_11   8 GkyeeAieaYkkA 20 
                 G++e+Ai  ++ A
  CTQ29302.1 441 GQLEQAISLLSSA 453
                 99****9777666 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0043       5.2      22      81 ..     308     368 ..     297     369 .. 0.83
   2 ?    2.8   0.0      0.12   1.4e+02      29      64 ..     382     418 ..     370     432 .. 0.77
   3 ?    0.5   0.0      0.62   7.4e+02      28      49 ..     432     453 ..     414     467 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0043
                 -HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHT..T-HHHHHHHH-S CS
      ANAPC3  22 spedayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkL..kkyeeAiaaLek 81 
                  + + y  Al   +++++++A + l+++ ln   ++++yl   + ++L  kk  +Ai+ L++
  CTQ29302.1 308 QHAAQYGRALLAMESNNFDQARKTLQPL-LNADPQNAWYLDLATDIDLgqKKTSDAINRLKN 368
                 555666679999999*************.777888889988888888877999999998876 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.12
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHH CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnskslgcrylfAq 64 
                 lA +l++ gq  +A ++l+++  +++++ + + l+Aq
  CTQ29302.1 382 LANALLQGGQPGEAATILNRYtFTYKEDGNGWDLLAQ 418
                 799***************9986666666555555555 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.62
                 HHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  28 llAlclylngqykrAyellrka 49 
                 + A+++ l gq ++A+ ll++a
  CTQ29302.1 432 ARAESMALVGQLEQAISLLSSA 453
                 4566777777777777777776 PP

>> DUF2268  Predicted Zn-dependent protease (DUF2268)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   9.7e-05      0.12      35      78 ..      98     143 ..      91     155 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.7e-05
     DUF2268  35 lieekgykgglaipdkiflfl..leneyskerlaallaHEyhHvvr 78 
                 li+++++  ++ + + ++l    +  ++++++la+++aHE+ Hv+ 
  CTQ29302.1  98 LINNDQINAFAFFGGNVVLHSalFRYSDNESELASVMAHEISHVTQ 143
                 5667777788888888888754477888889************975 PP

>> RPN1_RPN2_N  RPN1/RPN2 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00016      0.19     228     303 ..     288     363 ..     271     367 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
  RPN1_RPN2_N 228 ndkelvkevfkaaedklvkkQlayllarqqvkleleeledededlneilsneklsehfkaLakdLdvlepktpedi 303
                  +d++l ++ ++a +  ++++Q a  ++r  + +e+++ ++  + l+ +l+    +  +++La d+d+ + kt + i
   CTQ29302.1 288 GDNKLGTDLLNAWDKGNIRQQHAAQYGRALLAMESNNFDQARKTLQPLLNADPQNAWYLDLATDIDLGQKKTSDAI 363
                  46777788888889999**************************************************999998876 PP

>> GerPE  Spore germination protein GerPE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         8   9.6e+03      97     118 ..     354     375 ..     352     377 .. 0.78
   2 ?   10.6   0.0    0.0004      0.47      90     117 ..     452     479 ..     444     484 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8
       GerPE  97 iGststveaeaRvkhiRqllsd 118
                 +G+ +t  a  R+k+ R+l ++
  CTQ29302.1 354 LGQKKTSDAINRLKNARELRTN 375
                 5777778888999**9999876 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0004
       GerPE  90 ssssvvqiGststveaeaRvkhiRqlls 117
                 s+ss v++Gs ++++ +aR+ ++R+l++
  CTQ29302.1 452 SASSQVKLGSLQQARYDARIDQLRDLQA 479
                 7899*********************985 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.015        18       3      34 .]     311     342 ..     309     342 .. 0.90
   2 ?    1.7   0.0      0.33     4e+02       5      26 ..     380     401 ..     378     403 .. 0.88
   3 ?   -2.2   0.0       5.8   6.9e+03      16      23 ..     442     449 ..     441     465 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 a y  +++ ++ +++++A ++++  l +dp+n
  CTQ29302.1 311 AQYGRALLAMESNNFDQARKTLQPLLNADPQN 342
                 6688999***************9999999986 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.33
                 HHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyek 26 
                 +nl++++l+ g+  eA   +++
  CTQ29302.1 380 LNLANALLQGGQPGEAATILNR 401
                 79**************999887 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 5.8
                 -HHHHHHH CS
       TPR_8  16 dyeeAkey 23 
                 ++e+A++ 
  CTQ29302.1 442 QLEQAISL 449
                 55555554 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.8    0.0055       6.5       4      76 ..     310     374 ..     307     375 .. 0.83
   2 ?    4.9   0.1     0.028        33      48      71 ..     379     402 ..     377     408 .. 0.85
   3 ?    0.7   0.1      0.54   6.5e+02      10      32 ..     434     456 ..     428     467 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0055
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +a++ +a++ ++  ++d+A++ l+  l++      p++   a++l    ++ + ++++ +A+++l+ a ++++
  CTQ29302.1 310 AAQYGRALLAMESNNFDQARKTLQPLLNAD-----PQN---AWYLDLATDIDLGQKKTSDAINRLKNARELRT 374
                 567778888888888888888888888777.....765...99999999999**************9999876 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.028
      TPR_12  48 lrnLgrlyralgryeeAlelleea 71 
                 + nL+ ++++ g++ eA  +l++ 
  CTQ29302.1 379 QLNLANALLQGGQPGEAATILNRY 402
                 579999999999999999999985 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.54
      TPR_12  10 aavlrrlgrydeAlellekalei 32 
                 a+  +  g++++A++ll  a  +
  CTQ29302.1 434 AESMALVGQLEQAISLLSSASSQ 456
                 56666778888888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3588.56
//
Query:       CTQ29303.1  [L=119]
Description: putative oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-21   75.1   0.1    3.6e-21   74.9   0.1    1.1  1  ArsC          ArsC family
  ------ inclusion threshold ------
      0.057   13.6   0.0      0.086   13.1   0.0    1.4  1  Glutaredoxin  Glutaredoxin


Domain annotation for each model (and alignments):
>> ArsC  ArsC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.1     4e-25   3.6e-21       1      64 []       8     117 ..       8     117 .. 0.92

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 4e-25
                 EE-TT..............................................GCB-TTSHHHHHCTCCCTTSBHHHHHHHHHH-GGGB-S-EEEESSEEE CS
                 xxxxx..............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ArsC   1 Ygspn..............................................ellskrgttyreLnldkedlsedellelilenpsLirRPivvdgkrlq 53 
                 Y++p+                                              el+++++++y++Lnl+++ ls+++l++++++np+Li+RPivv  ++++
  CTQ29303.1   8 YHNPRcsksretlsllqsrgidpevvlyletppdagtlrqllqllgmesprELMRQKEDLYKSLNLADPALSNAALIQAMVDNPKLIERPIVVSRGQAR 106
                 888888888888888888999999999999999999999999999999999************************************************ PP

                 ESSSCCGGGGG CS
                 xxxxxxxxxxx RF
        ArsC  54 iGfneeeiraf 64 
                 iG+++e+++++
  CTQ29303.1 107 IGRPPEQVLEI 117
                 ********986 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.5e-06     0.086       1      33 [.       5      37 ..       5      58 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.5e-06
                  EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCC CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelgvkfeeidvdk 33
                  v ++  p+C  ++ +  lL+++g++ e++  ++
    CTQ29303.1  5 VKIYHNPRCSKSRETLSLLQSRGIDPEVVLYLE 37
                  789**********************99986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 961.82
//
Query:       CTQ29304.1  [L=303]
Description: putative transposase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-86  287.5   0.1    6.4e-86  287.2   0.1    1.1  1  Transposase_31  Putative transposase, YhgA-like
  ------ inclusion threshold ------
       0.04   13.1   0.7      0.053   12.7   0.7    1.2  1  FANCF           Fanconi anemia group F protein (FANCF)


Domain annotation for each model (and alignments):
>> Transposase_31  Putative transposase, YhgA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.2   0.1   7.1e-90   6.4e-86       1     203 [.       7     208 ..       7     209 .. 0.99

  Alignments for each domain:
  == domain 1  score: 287.2 bits;  conditional E-value: 7.1e-90
  Transposase_31   1 tpHDalfkellsdpetardfleihlpeelkelldletlklesgsfieeelreslsDlLfsvktkegkegyiyvliEhksspdklmafrLlrYava 95 
                     tpHDa+fk++ls+p+tardfl+ +lpe+l++++dl+tl+lesg+f+e++lr +++D+L+s+kt++g +gyiy+liEh+s+pd++mafrL+rYa+a
      CTQ29304.1   7 TPHDAVFKTYLSHPDTARDFLQLYLPETLLKVCDLRTLHLESGHFVEDDLRPFYADILYSLKTTAG-DGYIYALIEHQSTPDRHMAFRLMRYAIA 100
                     7****************************************************************9.**************************** PP

  Transposase_31  96 imerhlkakekeklplviplvfYhGeee.wplslslldlfddpelakelykseflLvDltkvpddeilekrrlallllvqkhirqrdlaellkkl 189
                     +m+rhl+a++++ lplvip++fYhG  + +p+sl++ld+f +pela +ly+ +f+L+D+t++pddei +++r+a+l+l+qkhirqrdla+ll+kl
      CTQ29304.1 101 AMQRHLDAGHDR-LPLVIPVLFYHGLVSpYPFSLRWLDEFVAPELAGHLYHGAFPLADITVIPDDEIATHQRMATLELLQKHIRQRDLAQLLDKL 194
                     ************.********************************************************************************** PP

  Transposase_31 190 velleelekteeql 203
                      ell ++ +te+q+
      CTQ29304.1 195 SELLLTGLATESQV 208
                     ********999987 PP

>> FANCF  Fanconi anemia group F protein (FANCF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7   5.9e-06     0.053     124     214 ..     171     257 ..     147     301 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.9e-06
       FANCF 124 eeelqedlsrlarrkaalklLsklsselsedalletqaelLlkrLqekleaseaekaerlLsklleslpsqenllkViaaaLLleadieee 214
                 + ++ e l++ +r++  ++lL kls+ l  ++ +e q + L+++L +++++   +++ +++++l  + p++++ l  ia+ L  +++ e++
  CTQ29304.1 171 RMATLELLQKHIRQRDLAQLLDKLSELLLTGLATESQVQALMHYLVQAGNT---REPIKFIRELALRTPQHKETLMTIAEYL-EQQGLERG 257
                 556677889999**********************************99995...8999***********99*********99.33444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2371.58
//
Query:       CTQ29305.1  [L=225]
Description: ATPase regulatory factor involved in DnaA inactivation [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-18   66.9   0.0      2e-17   63.8   0.0    1.9  1  Bac_DnaA  Bacterial dnaA  protein
  ------ inclusion threshold ------
      0.056   13.8   1.0       0.59   10.5   1.0    2.4  1  AAA_16    AAA ATPase domain


Domain annotation for each model (and alignments):
>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   2.2e-21     2e-17       4     213 ..       8     204 ..       5     209 .. 0.87

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 2.2e-21
                 S-SGGG----TTTHHHHHHHHHHHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHTT-SEEE CS
    Bac_DnaA   4 rytFetFviGasnrlAlaaalkvaeapgkkynPlfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklrkvDvLl 102
                 + tF +F  G + +l laa ++v  + ++ y  ++i++  G G+ HLl+a+  e+ +  +   v Y+  ++ ++ + + l         e + ++ ++ 
  CTQ29305.1   8 DETFASFWPGDNPSL-LAALQNVLRQEHSGY--IYIWSREGAGRSHLLHAACAELSQ--RGDAVGYVPLDKRTWFVPEVL---------EGMEQLALVC 92 
                 568889988876555.566777777666655..9****************9988765..67789******9888554444.........445678899* PP

                 EE-GGGGTT-HHHHHHHHHHHHHHHTTT-.EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT----TTHHHHHHHH--S CS
    Bac_DnaA 103 iDDiqflagkektqeelfhtfnalleegk.qvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaeklevpeevlefiaervtd 200
                 iD+i+ +ag e  +  +f ++n +le+gk +++++ Dr+P++l+     l sr+++G + +++p   e +l+ l+ +++  ++e+pe+v +f+ +r+++
  CTQ29305.1  93 IDNIECVAGDEPWEMAIFNLYNRILESGKtRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFEMPEDVCRFLLKRLDR 191
                 **************************998589************99999************************************************** PP

                 -HHHHHHHHHHHH CS
    Bac_DnaA 201 nvRelegalnrlk 213
                 ++R l  +l +l 
  CTQ29305.1 192 EMRSLFMTLDQLD 204
                 *****99988875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.0   6.6e-05      0.59      12     148 ..      22     207 ..      21     221 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.6e-05
      AAA_16  12 Llsalervrsgrp.elvllsGesGvGKsslvrellralekd...........ggiflrgkcdqlesaipysa.laqalareellrqllde......... 88 
                 Ll+al++v +++  +++++    G G s l+ ++  +l+++           + +f              ++ +++  ++      l+           
  CTQ29305.1  22 LLAALQNVLRQEHsGYIYIWSREGAGRSHLLHAACAELSQRgdavgyvpldkRTWF--------------VPeVLEGMEQ------LALVcidniecva 100
                 5666666666666689***************9999999999665444444442222..............2222222211......1111111111221 PP

      AAA_16  89 .......aesaeleawrekleeala......................................avpelagaea............srllellkrll.al 129
                        a           +   ++                                        ++l+++++              + e + r+l ++
  CTQ29305.1 101 gdepwemA-----------IFNLYNrilesgktrllitgdrpprqlnlglpdlasrldwgqiyKLQPLSDEDKlqalqlrarlrgFEMPEDVCRFLlKR 188
                 11222221...........22222233333333333444444555555666677777788888344444444444455566677888888999999899 PP

      AAA_16 130 lsrderplvlvlDdlqwad 148
                 l r+ r l ++lD+l+ a 
  CTQ29305.1 189 LDREMRSLFMTLDQLDHAS 207
                 9988888999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1702.68
//
Query:       CTQ29306.1  [L=428]
Description: uracil transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.8e-107  357.3  43.1   7.8e-107  357.3  43.1    1.4  2  Xan_ur_permease  Permease family
  ------ inclusion threshold ------
        0.1   12.6   2.1       0.38   10.8   2.1    2.0  1  DUF1201          Protein of unknown function (DUF1201)


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.3  43.1  8.7e-111  7.8e-107       2     387 ..      16     383 ..      15     385 .. 0.98
   2 ?   -4.0   0.9      0.49   4.4e+03     312     328 ..     392     408 ..     389     412 .. 0.65

  Alignments for each domain:
  == domain 1  score: 357.3 bits;  conditional E-value: 8.7e-111
                      HHHHHHHHHHHHHHHHHHHHHHTTTS-.........H.HHHHHHHHHHHHHHHHHTTT-----EEE-GGGHH..HHHGGG-....HHHHHHHHH CS
  Xan_ur_permease   2 qllllglQhllamfaalvvvPllvgdalglaeelrqlisatllasGiatllqllifgirlpillgssfafvt..almialGsaedieialagll 93 
                      q++ l+lQhl+amf+a+v+vP+l++ +          +++ ll++Gi+tll+l+i+++++p++lgssfaf++  +l++ lG    +e+al+g++
       CTQ29306.1  16 QTIPLSLQHLFAMFGATVLVPILFHIN----------PATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISpvLLLLPLG----YEVALGGFI 95 
                      899************************..........99*********************************999999999....9******** PP

                      HHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-..BTT.B---HHHHHHHHHHHHHHHHHHHSSSTTTTTHHH CS
  Xan_ur_permease  94 gallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaavegltvvslkllllavvvllvilllsvflkglfsqlpi 187
                      ++++++++++++++++g++ +l  ++pP  +g++v +iGl+la +a++++g+++a+  g +  ++k++ +++v+l+v++  sv+++g+++ +pi
       CTQ29306.1  96 MCGVLFCLVSFIVKKAGTG-WLDVMFPPAAMGAIVAVIGLELAGVAANMAGLLPAD--G-QSPDSKTIIISMVTLAVTVFGSVLFRGFLAIIPI 185
                      ******************5.**********************************66..4.457******************************* PP

                      HHHHHHHHHHHHHHHHTTSSHHHHS-SS-----------HH..H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TIIIIIHHHHHHHHHHHHH CS
  Xan_ur_permease 188 LigiiagwllalfmgivnlspevseapwfqlpsplkfgtplfnlgliltvlavalvavvesvGdiravakvvgrslkpkpdlrralladGlatl 281
                      Lig+++g++l+++mg+v+++p + ea+wf lp    f tp f++ +i t+l+ alv+++e+vG++ ++a++v+r+l ++p+l+r+++a+Gl+t+
       CTQ29306.1 186 LIGVLVGYALSFVMGVVDTTP-IAEAHWFALP---TFYTPRFEWFAIFTILPAALVVIAEHVGHLVVTANIVKRDLIRDPGLHRSMFANGLSTI 275
                      *********************.9********8...899999***************************************************** PP

                      HHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS-..SHHHHHHH CS
  Xan_ur_permease 282 lsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdld..sarnlliv 373
                      +sg++G++p+tty+eniGv+a+t+v+s++v+  a++i+ill++++klaa +++IP pv+gGv+l+++g+i asg++ l+++++d  +a+nl+++
       CTQ29306.1 276 VSGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIAILLSCVGKLAAAIQIIPVPVMGGVSLLLYGVIGASGIRVLIESKVDysKAQNLILT 369
                      *************************************************************************************9******** PP

                      HHHHHHHHH----- CS
  Xan_ur_permease 374 avslvlGlgvatvp 387
                      +v+l++G++ a+v+
       CTQ29306.1 370 SVILIIGVSGAKVH 383
                      *********99876 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 0.49
                      HHHHHHHHHHHT--HHH CS
  Xan_ur_permease 312 mvtagvilillglipkl 328
                      m++a ++ i+l+li kl
       CTQ29306.1 392 MALATIVGIALSLIFKL 408
                      56667777777777665 PP

>> DUF1201  Protein of unknown function (DUF1201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.1   4.3e-05      0.38      14      28 ..      93     107 ..      82     110 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.3e-05
     DUF1201  14 Gfliclflfclvvfi 28 
                 Gf++c  lfclv fi
  CTQ29306.1  93 GFIMCGVLFCLVSFI 107
                 9*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       886  (0.0494171); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3114.33
//
Query:       CTQ29307.1  [L=208]
Description: uracil phosphoribosyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-65  218.5   0.0    7.1e-65  218.3   0.0    1.0  1  UPRTase         Uracil phosphoribosyltransferase
    4.2e-14   52.4   0.2    6.3e-14   51.8   0.2    1.2  1  Pribosyltran    Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.034   14.2   0.0       0.06   13.4   0.0    1.4  1  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
       0.14   12.0   0.0       0.27   11.1   0.0    1.4  1  DUF3263         Protein of unknown function (DUF3263)


Domain annotation for each model (and alignments):
>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.3   0.0   1.6e-68   7.1e-65       3     207 .]       7     207 ..       4     207 .. 0.98

  Alignments for each domain:
  == domain 1  score: 218.3 bits;  conditional E-value: 1.6e-68
     UPRTase   3 shpllkakltilRdastsrkdfrelvdriarllaeealsallpveevtvttplgkeysgelldeekialVpilRaGegmeealrellpearvghlglqr 101
                 +hpl+k+kl ++R++++s+k+frel+++++ ll++ea+++ l++e+vt++   g  + ++++ + ki++VpilRaG+gm+e+++e +p+ar+  +g++r
  CTQ29307.1   7 KHPLVKHKLGLMREHDISTKRFRELASEVGSLLTYEATAD-LETEKVTIEGWNGPVEVEQIKGK-KITVVPILRAGLGMMEGVLEHVPSARISVVGIYR 103
                 8***************************************.**************999998886.********************************** PP

     UPRTase 102 eeetlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeefpkvkvvtaavDeeldekgyivpGlGDf 200
                 +eetlepv y++kL ++i+er +l++Dp++aTGgs++a i+lLk++g+   +I vl ++a++eg+++l +++p+v+++ta+vD++l+e+gyi+pGlGD+
  CTQ29307.1 104 NEETLEPVPYFQKLVSNIDERMALVVDPMLATGGSMIATIDLLKNAGC--TSIKVLVLVAAPEGIAALEKAHPDVELYTASVDKGLNEHGYIIPGLGDA 200
                 *********************************************666..69*********************************************** PP

     UPRTase 201 GDRlFgT 207
                 GD++FgT
  CTQ29307.1 201 GDKIFGT 207
                 ******9 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.2   1.4e-17   6.3e-14      24     130 ..      64     166 ..      62     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 1.4e-17
                   EE--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEEE CS
  Pribosyltran  24 eeyngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpeevri 120
                   e+++gk+ +vv+i+r G+ +   +  ++      v    +++++ e ++  + +   l ++++ +  l+VD +l+tGg+++a+++lLk++g++++++
    CTQ29307.1  64 EQIKGKKITVVPILRAGLGMMEGVLEHVPSARISVVGIYRNEETLEPVP-YFQK---LVSNIDERMALVVDPMLATGGSMIATIDLLKNAGCTSIKV 156
                   66899***********************544444444444444444443.4433...9*************************************** PP

                   EEEEE-HHHH CS
  Pribosyltran 121 avlvdkpate 130
                    vlv+ p++ 
    CTQ29307.1 157 LVLVAAPEGI 166
                   ****999875 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.3e-05      0.06      76     118 ..     116     158 ..     104     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
                     -EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEE CS
  Pribosyl_synth  76 tvvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvla 118
                     ++v ++  r+a++vd ++    s++a+ ++lk+ G   i vl+
      CTQ29307.1 116 KLVSNIDERMALVVDPMLATGGSMIATIDLLKNAGCTSIKVLV 158
                     58999******************************98777765 PP

>> DUF3263  Protein of unknown function (DUF3263)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.1e-05      0.27      32      58 ..     107     133 ..     101     135 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.1e-05
     DUF3263  32 glsptrYyqlLnaLiddpeAlaadPvl 58 
                  l p+ Y+q+L + id+  Al  dP+l
  CTQ29307.1 107 TLEPVPYFQKLVSNIDERMALVVDPML 133
                 57899*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1696.93
//
Query:       CTQ29308.1  [L=477]
Description: 6-phospho-beta-glucosidase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-132  442.3   1.5   1.6e-132  442.1   1.5    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1
     0.0029   17.1   0.0     0.0048   16.4   0.0    1.3  1  Cellulase      Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  442.1   1.5  1.8e-136  1.6e-132       5     452 ..       4     473 ..       1     474 [. 0.89

  Alignments for each domain:
  == domain 1  score: 442.1 bits;  conditional E-value: 1.8e-136
                    S-TT-EEEEE--HHHHH--TTSTT---BHHH........HHHHHGGGSTTS--..-SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTS.T CS
  Glyco_hydro_1   5 fpedFlwgaataayqiEGawnedGkgesiwD........tftetpgkvlegsn..gdvacdsYhrykeDvallkelgvkayrfSisWpRilPkG.e 89 
                    f ++Flwg+a aa+q+EG+w+e+Gkg s+ D        +  e+   v+ g+n  +  a+d+Yhry++D+al++e+g+k++r Si+W+Ri+P+G e
     CTQ29308.1   4 FKAGFLWGGAVAAHQLEGGWQEGGKGISVADvmtagahgVPREITDGVVAGKNypNHEAIDFYHRYPQDLALFAEMGFKCFRTSIAWTRIFPQGdE 99 
                    899****************************444433322223334444555556788************************************99 PP

                    T---HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH.H-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHH.....HT..SS CS
  Glyco_hydro_1  90 geinekGlayYerLidelleagieplvTlyHwdlPqaLqd.eGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallg.....yl..tg 177
                     e+ne+Gl++Y+ L+de+l++giep++Tl H+++P+ L   +Ggw+nr++id f ++a+vvf+r+++kvk+w+TfnE+n  a++      ++    
     CTQ29308.1 100 LEPNEAGLQFYDDLFDECLKHGIEPVITLSHFEMPYHLVTeYGGWRNRKLIDFFVRFARVVFTRYQHKVKYWMTFNEINNQANFHedfapFTnsGL 195
                    9************************************9877************************************9987765311111331134 PP

                    -STT-S-TTTHHHHHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHH.HHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG..S CS
  Glyco_hydro_1 178 efaPgkkdleaayeaaHnlllaharavklykevaqkgkigivlnlslaeplseseedk.eaaeraleflngwfldpvvkGdYpeemkellrergal 272
                    ++ P+++    +y+aaH  l+a+a avk+ +e+++  +ig ++++   +pl+  ++d   a++ + +    wf+d+ v+G+Yp+++ +++ +rg +
     CTQ29308.1 196 KYLPDEDREPVMYQAAHYELVASALAVKAAREINPALQIGCMIAMCPIYPLTCAPDDMmMAMNAMHR--RYWFTDVHVRGRYPQHLLNYFARRGFT 289
                    677889999999*****************************************99999555554444..46************************* PP

                    ----HHHHHHH.TT--SEEEEEEEEEEEEEE--...-STT---SSGGGGG-SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE----EE- CS
  Glyco_hydro_1 273 peiteedkell.kgkadflglnyYtsrlvknkeseeaslskteekkleeevdpslpktdigwiiepeglrkllellkkeYqklpiyiteNGlgakd 367
                    + ite+d + l +g +d++g++yY+s  +k++e    ++  + +++++   +p+++k+d+gw+i+p glr+ l++  ++Yq lp++i+eNG ga d
     CTQ29308.1 290 LDITEADRQALtEGCVDYIGFSYYMSFATKATE---DNPLLDYDETTSLVSNPYVKKSDWGWQIDPVGLRYSLNWFWDHYQ-LPLFIVENGFGAID 381
                    ***********8899***********9999888...56666667777778889****************************.************99 PP

                    BSSS.HHH--HHHHHHHHHHHHHHHHHH.HTT--EEEEEEE-SB----GGGT.TSEE--SEEEET....TTTTEEEE-HHHHHHHHHHH-SS CS
  Glyco_hydro_1 368 eiee.gkveDdkRidYlkehlnevkkai.edgvdlkgYvawsllDnfewaeg.yskrfGlvyvdr....netleRtpkkSakwykeviekng 452
                      e  g+v+D++RidYl  h++e+kka+ edgvdl gY+ w+ +D++++ +g ++kr+G++yvd+    n tl R +kkS+ wy++vi++ng
     CTQ29308.1 382 VREAdGSVNDQYRIDYLSAHIAEMKKAVvEDGVDLMGYTPWGCIDLVSAGTGeMKKRYGFIYVDKdnegNGTLARSRKKSFAWYQQVIASNG 473
                    77667**********************99***********************9***********99888899*****************997 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.4e-07    0.0048      24     133 ..      70     179 ..      51     193 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.4e-07
                 HHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS..........TTTCSSSSTTTTHHHHHHHHHHHHHHH CS
   Cellulase  24 kalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHse..........egwltkadgnssedtaeeffkklwtqi 112
                  + +++++++gf+++R  ++w ++++++++++ +e+ l+ ++++ + + ++g+  ++ + +           +           + +  +ff  + + +
  CTQ29308.1  70 PQDLALFAEMGFKCFRTSIAWTRIFPQGDELEPNEAGLQFYDDLFDECLKHGIEPVITLSHFempyhlvteyG--------GWRNRKLIDFFVRFARVV 160
                 5678899**********************************************98888766433322222222........223334566777777777 PP

                 HHHHTTTTTTEEEESSSS--S CS
   Cellulase 113 AerykkndevvifelmNEPhg 133
                  +ry  + +v  + ++NE + 
  CTQ29308.1 161 FTRY--QHKVKYWMTFNEINN 179
                 7777..444445556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3828.87
//
Query:       CTQ29309.1  [L=297]
Description: Beta-glucoside kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-41  140.7   0.0    8.5e-41  140.3   0.0    1.0  1  ROK          ROK family
     0.0067   15.5   0.1        9.6    5.1   0.0    3.0  3  Glucokinase  Glucokinase


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.3   0.0   9.5e-45   8.5e-41       3     290 ..       5     284 ..       3     287 .. 0.92

  Alignments for each domain:
  == domain 1  score: 140.3 bits;  conditional E-value: 9.5e-45
                 EEEE-SSEEEEEEEETTS-EEEEEEEEEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCC.CCTTHHHHHHHHHTS-E CS
         ROK   3 gidiGgtkialalvdeegeilarekvetptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitw.enfdlvekleerlnvpv 100
                 + diGgt +++ +++ +g  l++ + +   ++   +l+++++ l ++     +   +++i +pG+i+++sg i+    i+  +nf +++ le+r+++pv
  CTQ29309.1   5 AFDIGGTALKMGVMARDGRLLETARQSINDSDGDRILQAMLSWLAAHPS--CE---GIAISAPGYIDPHSGLITMGGAIRRfDNFAMKSWLETRTGLPV 98 
                 78*********************99988999999999888887777773..33...8**********************999***************** PP

                 EEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTC....CGTTS CS
         ROK 101 evenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqq....kgekl 195
                  venD+n++ laE + g+++++ n++++t+gtG+G+++  + +li+G++  age+G +  d+    +  +++  +++++  r l+ r+ q     ++ +
  CTQ29309.1  99 SVENDANCVLLAERWQGKAAEMANFLVLTIGTGIGGAIFCQHQLINGARFRAGEFGYMLTDRP--GGRDPRRYSMNENCTLRVLRHRYAQhigaPLDSV 195
                 **********************************************************99866..57889999***************9999999**** PP

                 -HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHHHHHHHHHHHCCTTTTCCCT-EEEE-S-STTHHHHHHHHH CS
         ROK 196 eakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadklleairklvkkylnkklevpvveivaaklgdkagllGaaaL 290
                 +++ i+ +   gd+v + +v ++ + l++++ +l+ +fdpq i +gGgv+e +++l     l+ ++l+    + +  + + ++g++agl+Ga++ 
  CTQ29309.1 196 TGELIFDRYDAGDPVCQRLVAEFFNGLGHGLYNLVHIFDPQTIFIGGGVVERPGFL----TLLRQHLAWFGIADY--LDTVSHGNDAGLIGAVYH 284
                 ********************************************************....555666665555555..77889**********875 PP

>> Glucokinase  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.011     1e+02       4      47 ..       7      49 ..       4      80 .. 0.70
   2 !    5.1   0.0    0.0011       9.6     121     147 ..     114     140 ..      94     153 .. 0.84
   3 !    5.0   0.0    0.0012        10     224     267 ..     205     247 ..     178     257 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.011
  Glucokinase  4 DiGGTkarlalveaeeeelelleiekyasadyasleealqafla 47
                 DiGGT  ++ ++  +++   +++ ++++ +d +++ +a+   la
   CTQ29309.1  7 DIGGTALKMGVMARDGRL-LETARQSINDSDGDRILQAMLSWLA 49
                 9*********99998887.4455555666666665555555555 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0011
  Glucokinase 121 ggkkdaeapiavlGaGTGLGvallipe 147
                  +gk+ + a+++vl  GTG+G a+ +++
   CTQ29309.1 114 QGKAAEMANFLVLTIGTGIGGAIFCQH 140
                  56788999*************998776 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0012
  Glucokinase 224 egedplarealelFlailGsvagdlaLkllargGvyiaGGiapk 267
                  + +dp++++ +  F++ lG    +l+  + + + ++i+GG++ +
   CTQ29309.1 205 DAGDPVCQRLVAEFFNGLGHGLYNLVHIFDP-QTIFIGGGVVER 247
                  5679********************9866665.67*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2395.91
//
Query:       CTQ29310.1  [L=345]
Description: phosphoribosylaminoimidazole synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-38  132.1   0.0    2.9e-38  131.4   0.0    1.4  1  AIRS_C    AIR synthase related protein, C-terminal domain
      2e-15   57.2   0.6    3.5e-15   56.4   0.6    1.4  1  AIRS      AIR synthase related protein, N-terminal domain


Domain annotation for each model (and alignments):
>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4   0.0   3.3e-42   2.9e-38       2     153 ..     177     341 ..     176     344 .. 0.96

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 3.3e-42
                 TTEEEEEEETSSCTCCHHHHHHHCHHHCTSHTT.....TSEHHHHHHHHHHHHHHHHHHHH.HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECG.. CS
      AIRS_C   2 pGdvliltgslGlggagtslkrkileeegldds.....avqlgdvlleptliyvkralaal.kglvkaahDvTgGGLlgalaemapasgvgaeidld.. 92 
                 +Gdvl+ ++s+G +++g+sl+rki+e +g+d +     +++l+d+ll pt+iyvk  l ++ + +v+a++++TgGG+++++++++p++  +a id++  
  CTQ29310.1 177 DGDVLVALASSGPHSNGYSLVRKIIEVSGVDPQttdldGKPLADHLLAPTRIYVKSVLDLIaSVDVHAIAHLTGGGFWENIPRVLPDN-TQAIIDESsw 274
                 6*****************************999****8888**********************************************8.********** PP

                 .THHHHHHHH.....HHHHHHHCSTTTEEEEEEEHGGH.HHHHHHHHHTTCCCEEEEEEEEESSSEEE CS
      AIRS_C  93 .kvpifdele.....splemllsensGrllvavppeea.davlaileeeglpeaavIGevtakeelsv 153
                  ++ +f++l+     s++em++++n+G++++++ p+++ d+++a+l++ g+ +a+ IG + a+++++ 
  CTQ29310.1 275 qWPSVFNWLQaagnvSQHEMYRTFNCGVGMIIALPAAEaDKAIALLNDKGE-NAWKIGYIKASDSEQR 341
                 ****************************99998888888************.8*******99987765 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.6   3.9e-19   3.5e-15      16      94 .]      59     164 ..      17     164 .. 0.86

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 3.9e-19
                 ECCTCCCC................HHHHHHHHHHHHHHTTTEEEEEEEEEEEEC.....HHHHHHHHHHHHHHHTT-EEEEEEEEEESS......EEEE CS
        AIRS  16 vlvepvhf................iGakavavnlsDlaamGArPlalllslalp.....wleevvrglaeaaeelgvplvgGdtsfsne......ptis 87 
                 vlv+++++                iG  +va++++Dl++ GA+Pl++l+++a +     +++ v++g+ae++ + g++lvgG+t+++++      + ++
  CTQ29310.1  59 VLVSGTDGvgtklrlamdlkrhdtIGIDLVAMCVNDLVVQGAEPLFFLDYYATGkldvdTAASVINGIAEGCLQSGCALVGGETAEMPGmyhgedYDVA 157
                 444444444445555555555666*************************************************************999999999999** PP

                 EEEEEEE CS
        AIRS  88 vtavGlv 94 
                  ++vG+v
  CTQ29310.1 158 GFCVGVV 164
                 ****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2814.51
//
Query:       CTQ29311.1  [L=213]
Description: phosphoribosylglycinamide formyltransferase 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-65  220.4   0.0    1.7e-65  220.2   0.0    1.0  1  Formyl_trans_N  Formyl transferase


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.2   0.0   9.4e-70   1.7e-65       1     181 []       2     182 ..       2     182 .. 0.99

  Alignments for each domain:
  == domain 1  score: 220.2 bits;  conditional E-value: 9.4e-70
                     -EEEEEESESSHHHHHHHHHHHHTTSECEEEEEEESCTTEHCHHHHHHCCHCCCECHHCCSCCCCCCCHHHHHHHHCTT-SEEEEES--S---HH CS
  Formyl_trans_N   1 kkivvlisgtgsnlqalldalkkgsleadvvlvvsnkdkaaglekaeaasiptkvfeekkleprsqfeeelaeelkelkadlivlagymkllpke 95 
                     k+ivvlisg+gsnlqa++da+  ++++++  +v+snk++a gle+a+ a+ip+++++++++  r++f+++l +e++++++dl+vlagym++l+++
      CTQ29311.1   2 KNIVVLISGSGSNLQAIIDACGRKQINGTLRAVFSNKADAFGLERARLAGIPAHALAQSQFADREAFDRQLMHEIDAYAPDLVVLAGYMRILSPA 96 
                     69********************************************************************************************* PP

                     HHHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N  96 lvqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehkalveal 181
                     +v+++++++lniHpSLLP+++G+++++++le+Gd+e+G+++hfv++elD G++++q+kv+++a d++ee+++rv+ +eh +++ ++
      CTQ29311.1  97 FVSHYQGRLLNIHPSLLPKYPGLHTHRQVLENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEEEITARVQAQEHAIYPLVI 182
                     **********************************************************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1536.74
//
Query:       CTQ29312.1  [L=686]
Description: polyphosphate kinase, component of RNA degradosome [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-74  249.2   0.2    2.2e-74  248.5   0.2    1.4  1  PP_kinase_C_1  Polyphosphate kinase C-terminal domain 1
    9.9e-70  233.5   0.0    5.9e-67  224.4   0.0    2.4  2  PP_kinase_C    Polyphosphate kinase C-terminal domain 2
    9.6e-45  152.7   0.8    1.5e-44  152.0   0.8    1.3  1  PP_kinase      Polyphosphate kinase middle domain
    7.6e-32  109.8   1.6    2.1e-31  108.4   1.6    1.8  1  PP_kinase_N    Polyphosphate kinase N-terminal domain
    2.5e-15   56.6   0.1    2.4e-10   40.4   0.3    2.9  2  PLDc_2         PLD-like domain
     0.0062   16.1   0.2      0.012   15.2   0.2    1.4  1  MR_MLE_C       Enolase C-terminal domain-like
  ------ inclusion threshold ------
        0.1   13.2   0.0       0.63   10.6   0.0    2.3  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> PP_kinase_C_1  Polyphosphate kinase C-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.5   0.2   8.6e-78   2.2e-74       3     165 ..     331     493 ..     329     495 .. 0.98

  Alignments for each domain:
  == domain 1  score: 248.5 bits;  conditional E-value: 8.6e-78
                    HHHHHHS-EEEECTTB-SCHHHHHHHHHHC-TTEEEEEEEES-S-S--HHHHHHHHHHHTT-EEEEEES--SSS--HHHHHHHHHHHHHT-EEEE- CS
  PP_kinase_C_1   3 feairkkdillhhPyesfesvvelleeAaedpkvlaikitlYrvakdskivkaLieAaengkqvtvlvElkArfdeenNiewakkleeagvkvvyg 98 
                    f+air++d+ll++Py++fe+v+ell++A+ dp+vlaiki++Yrvakds+i++a+i+Aa+ngk+vtv+vEl+Arfdee+Ni+wak+l+eagv+v+++
     CTQ29312.1 331 FDAIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDAMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFS 426
                    99********************************************************************************************** PP

                    -TT--B--EEEEEEE---S---EEEEEESS-SS---SS-EEEEEEEE--HHHHHHHHHHHHHHTT-- CS
  PP_kinase_C_1  99 vvglkvhaklllvvrreeeklrryvhlgtGnynektaklYtDlslltadeelgedveklfnvltgks 165
                     +glk+hakl+l+ r+e++++ ry+h+gtGn+nekta++YtD+slltad +++++v+++fn++++ +
     CTQ29312.1 427 APGLKIHAKLFLISRKEGDEVVRYAHIGTGNFNEKTARIYTDYSLLTADARITNEVRRVFNFIENPY 493
                    ***************************************************************9876 PP

>> PP_kinase_C  Polyphosphate kinase C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.1    0.0019       4.9      28      62 ..     362     399 ..     349     409 .. 0.81
   2 !  224.4   0.0   2.3e-70   5.9e-67       1     172 []     501     672 ..     501     672 .. 0.99

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0019
  PP_kinase_C  28 kakiilklNs...ledkeiidkLyeAsqaGVkiklivr 62 
                  ++ + +k+N     +d++iid++++A++ G k++++v 
   CTQ29312.1 362 PSVLAIKINIyrvAKDSRIIDAMIHAAHNGKKVTVVVE 399
                  5667777775222479******************9995 PP

  == domain 2  score: 224.4 bits;  conditional E-value: 2.3e-70
  PP_kinase_C   1 LlvaplnlrekllelidreieaakagkkakiilklNsledkeiidkLyeAsqaGVkiklivrgicclrpgvkglsenikvisivdrfLEhaRiyifen 98 
                  Llv+p+n r+ l+e+idrei++a++g+++ i+lklN+l+dk ++d+Ly+As+ GV ++l++rg+c+l+pg +g+seni+visivdrfLEh R+y+fen
   CTQ29312.1 501 LLVSPQNSRRLLYEMIDREIANAQNGQPSGITLKLNNLVDKGLVDRLYAASSSGVPVNLLIRGMCSLIPGLEGISENIRVISIVDRFLEHDRVYCFEN 598
                  89************************************************************************************************ PP

  PP_kinase_C  99 ggeeevyisSaDlmtRnldrRvevlvpvedeklkkelkeilelqlkDnvkareldedgeykkvkekeekkvraQ 172
                  gg+++v++sSaD+mtRn+d R+ev++p++d++lk+++ +i+++ ++D+vkar ld++ ++++v + +++kvraQ
   CTQ29312.1 599 GGDKQVWLSSADWMTRNIDYRIEVAAPLLDPRLKQRVLDIFDILFNDTVKARYLDKELSNRYVPRGNRRKVRAQ 672
                  ************************************************************************99 PP

>> PP_kinase  Polyphosphate kinase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   0.8   5.9e-48   1.5e-44       2     201 ..     119     321 ..     118     322 .. 0.92

  Alignments for each domain:
  == domain 1  score: 152.0 bits;  conditional E-value: 5.9e-48
                 HHHHHHHHHHHTTGGG---EE-.-TTTS-----TT-EEEEEEEESST-SS-..EEEEEE--.TTS-SEEEE-.T.TSS-.EEEEHHHHHHCCHHHH-T. CS
   PP_kinase   2 qkefleeyFeeevfpvLtplav.dpshpfpflsnkslnlavelrkkekeekekefalvkvP.svlpRfielp.peeegkerfilledvIeanldelFp. 96 
                 q+++l++yF++ + ++++p+++  ++  ++fl++   +lave+ +     ++ ++al+++P +++pRf++lp +  ++++ +ill+++++++ld++F+ 
  CTQ29312.1 119 QQAWLRNYFKQYLRQHISPILInRETDLVQFLKDDYTYLAVEIIRG----ENINYALLEIPsDKVPRFVNLPpEAPRRRKPMILLDNILRYCLDDIFKg 213
                 99********************5667789**************995....4468*******99*********533344458999**************9 PP

                 ..TSEEEEEEEEEEE-SSS----.---.-------------------EEEEETT--HHHHCCHTTTT---TTT.EEEE-.S--GGGGGCS...--TTTS CS
   PP_kinase  97 ..gyevleaylfrvtRnadleidedeaedlleeiekeLkkRrrgevvRLeveaempeellkfLlkeleldeedvyeidg.pldltdlmklvgkdrpeLk 192
                   +y+ l+ay++++tR+a++++  + +++l+e ++++Lk+R ++e+vR++++++mp+ ++++L+++l +++ d++ ++g +++++d++ + + ++ +L 
  CTQ29312.1 214 ffDYDALNAYSMKMTRDAEYDLVHEMESSLMELMSSSLKQRLTAEPVRFVYQRDMPDAMVEMLRDKLSISNYDSMLPGGrYHNFKDFIGFPNVGKANLV 312
                 999********************66666**************************************************************99999**** PP

                 SS----B-- CS
   PP_kinase 193 yppftpqtp 201
                 ++p++ +++
  CTQ29312.1 313 NKPMPRLRH 321
                 ***998765 PP

>> PP_kinase_N  Polyphosphate kinase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   1.6   8.4e-35   2.1e-31       1     106 [.       7     109 ..       7     110 .. 0.92

  Alignments for each domain:
  == domain 1  score: 108.4 bits;  conditional E-value: 8.4e-35
                  XXXHHHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHCCHHHHH.HTT-..-----------HHHHHHHHHHHHHHHHHHHHHHTHHHH CS
  PP_kinase_N   1 ylnRelSwLkFneRVLeeAedervplleRlkFlaIfssNlDEFfmvRvaslkrqleakvekksedgltpeeqlkaiseeveelveeqekileeellpe 98 
                  y+++elSwL+FneRVL+eA+d+++pl+eR++Fl+I+s+NlDEF++vR+a+lkr++  +  +++ ++ ++++ l +i+++v +  +e+++++ +ell e
   CTQ29312.1   7 YIEKELSWLSFNERVLQEAADKSNPLIERMRFLGIYSNNLDEFYKVRFAELKRRIIIS--EEQGSTAHSRHLLGKIQARVLKADQEFDSLY-NELLLE 101
                  89***************************************************66655..34445788899********************.****** PP

                  HHHTTEEE CS
  PP_kinase_N  99 Laeegikl 106
                  +a+++i+l
   CTQ29312.1 102 MARNQIFL 109
                  ******98 PP

>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.3   9.4e-14   2.4e-10      11     130 ..     366     487 ..     351     489 .. 0.87
   2 !   12.9   0.0   3.1e-05     0.079      18     130 ..     537     640 ..     516     643 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 9.4e-14
      PLDc_2  11 sidiatyyfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfetllgslHaKlylidgk.......tvivGSsNlt 102
                  i i +y +  d+ i+da++ aa++g+kv +++     +a++ +ea+ ++ k+l +eagv v ++ +    +HaKl+li +k       ++ +G+ N++
  CTQ29312.1 366 AIKINIYRVAKDSRIIDAMIHAAHNGKKVTVVVEL---QARFDEEANIHWAKRL-TEAGVHVIFSAP-GLKIHAKLFLISRKegdevvrYAHIGTGNFN 459
                 5789999999*************************...7788777888888888.******887654.2569*******8666888999********** PP

      PLDc_2 103 krgldlnlElnvviedkelakeleeeFe 130
                 ++  +  ++  + + d+++++e+++ F+
  CTQ29312.1 460 EKTARIYTDYSLLTADARITNEVRRVFN 487
                 *************************997 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.1e-05
      PLDc_2  18 yfvsdreildallkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfet.llgslHaKlylid...gktvivGSsNltkrgldlnlEl 112
                  + +d+ ++d+l++a+++gv v++l++       +   + l  ++e ++   +     ++ l+   H+ +y+++   +k v + S+ + +r+ d++ E+
  CTQ29312.1 537 NL-VDKGLVDRLYAASSSGVPVNLLIRG-----MCSLIPGLEGISENIRVISIV----DRfLE---HDRVYCFEnggDKQVWLSSADWMTRNIDYRIEV 622
                 45.78999*******************9.....566677888888884432222....23234...*******989899******************** PP

      PLDc_2 113 nvviedkelakeleeeFe 130
                 +  + d++l +++ ++F+
  CTQ29312.1 623 AAPLLDPRLKQRVLDIFD 640
                 *************99998 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   4.7e-06     0.012      17      75 ..     366     422 ..     351     424 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.7e-06
                 EEEEETSSSHHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTES CS
    MR_MLE_C  17 avKlkvggddvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldll 75 
                 a+K+++ +  va+d + + a+ +a+ +g++v+++v+  +++d ++ i +a++l e ++ 
  CTQ29312.1 366 AIKINIYR--VAKDSRIIDAMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTEAGVH 422
                 89999666..9******************************************988876 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00025      0.63      20      67 ..     389     433 ..     382     438 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
                 HTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEE CS
   Pyr_redox  20 elgkkVtvversdkllrllDeeaskilqeklekngievllntkveeie 67 
                 + gkkVtvv+     +  +Deea   ++++l++ g++v++++   +i+
  CTQ29312.1 389 HNGKKVTVVVELQA-R--FDEEANIHWAKRLTEAGVHVIFSAPGLKIH 433
                 5689*****99854.4..6********************999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4861.35
//
Query:       CTQ29313.1  [L=510]
Description: exopolyphosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.3e-101  337.2   0.1   1.8e-100  336.0   0.0    1.6  2  Ppx-GppA  Ppx/GppA phosphatase family
     0.0093   16.4   0.3       0.33   11.4   0.0    2.9  2  FtsA      Cell division protein FtsA
  ------ inclusion threshold ------
      0.044   14.0   0.0       0.13   12.5   0.0    1.8  2  HD        HD domain


Domain annotation for each model (and alignments):
>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.0   0.0  3.1e-104  1.8e-100       1     284 [.      26     308 ..      26     309 .. 0.99
   2 ?   -2.5   0.0      0.44   2.6e+03     209     230 ..     324     345 ..     315     371 .. 0.70

  Alignments for each domain:
  == domain 1  score: 336.0 bits;  conditional E-value: 3.1e-104
                 EEEEECTTEEEEEEEEEEE--CCCCCHCCSSC-HHHHHHHHHHHHHHHHHCCCTTGCCEEEEEEHHHHHSTTHHHHHHHHCCCCSS-EEEE-HHHHHHH CS
    Ppx-GppA   1 viarkaagllqivarekrkvrLaeglnesgrlqeeaiertisaLkefaellqkfkvenvrvVATsalRdavNadeFlarvkkevglkveiisgeeEarl 99 
                 viar+++g++qi+ r k++v+La+gl+e+ +l+eea++r++++L++fae+lq+f++++v++V+T++lR+a Na eFl+r++k++++++eiisg+eEarl
  CTQ29313.1  26 VIARVVDGAMQIIGRLKQRVHLADGLDENSVLSEEAMTRGLNCLSLFAERLQGFSPSSVCIVGTHTLRQATNAAEFLKRAEKVIPYPIEIISGNEEARL 124
                 79************************************************************************************************* PP

                 HHHHHHHHT---SSEEEEEEETTEEEEEEEETTEEEEEEEES--CCHHHHHHSGCCC--HHHHHHHHHHHHHHCTTTHHHHCCCEHHCCCCCCCHCCHH CS
    Ppx-GppA 100 iylgvvssllekgrglviDiGGGStElvlgeekevsklvSlplGavrlterfltddpltkeeveaarkavekeleevkdevkkegewtrlvgtsgtisa 198
                 i++gv ++++e gr+lviDiGGGStElv+ge++e++ ++S+++G+v++ + +++ ++++ke++++ar a+ ++le+++++++++g wt+++g+sgti+a
  CTQ29313.1 125 IFMGVEHTQPERGRKLVIDIGGGSTELVIGEDFEPRLVESRRMGCVSFSQAYFPGGVINKENFQRARLAAVQKLETLAWQFRIQG-WTVALGASGTIKA 222
                 *************************************************************************************.************* PP

                 CHHHHHHCT.SSCEEEHHHHHHHHHHHCTSSCHHHHHSTTS-CCHHCTHHHHHHHHHHHHHHCT-SEEEEES--HHHHHHHHHHHH CS
    Ppx-GppA 199 laeltelhgekgyeitaeeleeliekllqlkkeeelklagvsdeRadvivagalilsavlealeieaviisegalrEGvlyslllk 284
                 ++e+  ++gek++ it e+le l+ +ll++k+++ l+l g+s++R++v+ +g++il+ v++al+i+++++s+galrEGvly+++ +
  CTQ29313.1 223 AQEVLVAMGEKDGFITPERLEMLVSELLKHKNFDALSLPGLSEDRKAVFAPGLAILCGVFDALAIKELRLSDGALREGVLYEMEGR 308
                 **********************************************************************************9865 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.44
                 SSCEEEHHHHHHHHHHHCTSSC CS
    Ppx-GppA 209 kgyeitaeeleeliekllqlkk 230
                 ++y+i++e+ + ++e++ q+ +
  CTQ29313.1 324 NQYNIDREQARRVLETTTQMLE 345
                 2677888888888888777765 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.038   2.3e+02       1      17 [.      14      30 ..      14     121 .. 0.82
   2 !   11.4   0.0   5.6e-05      0.33       2      29 ..     141     168 ..     140     399 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.038
                EEEEE-SSSEEEEEEET CS
                xxxxxxxxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaed 17
                a+vD+G+++  +++a+ 
  CTQ29313.1 14 AAVDLGSNSFHMVIARV 30
                68999999999999997 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.6e-05
                 EEEE-SSSEEEEEEETTEEEEEEEES-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA   2 lvDiGagktdvavaedgalvhlrvigvg 29 
                 ++DiG+g+t+++++ed +++ +++  +g
  CTQ29313.1 141 VIDIGGGSTELVIGEDFEPRLVESRRMG 168
                 8**************9887775554443 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.1   6.5e+03       3      71 ..      89     106 ..      87     124 .. 0.59
   2 ?   12.5   0.0   2.2e-05      0.13       6      94 ..     334     418 ..     330     453 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHH CS
          HD   3 eHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilreve 71 
                 +H+l+ a  a+++ +                                                   ++e
  CTQ29313.1  89 THTLRQATNAAEFLK---------------------------------------------------RAE 106
                 556655555555544...................................................444 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHTTCCHHHH CS
          HD   6 leVaklarrlaedlge.......eedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld..ledvaklirehhesweg 94 
                 ++V++ + ++ e+++e       +    ll++a  lH +G   +++             + + ++a+il+++ ++ +     ++ a l+r+h++ +  
  CTQ29313.1 334 RRVLETTTQMLEQWQEqnpklanPHLAALLKWAVMLHEVGLNINHS-------------GMHRHSAYILQNSDLPGFNQeqQMLMATLVRYHRKAIKL 418
                 57777777777777777777887777789***********999776.............67899999999999999666999***********98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3652.13
//
Query:       CTQ29314.1  [L=742]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-63  213.2   0.0    5.2e-63  212.7   0.0    1.2  1  EAL       EAL domain
    1.2e-37  129.7  37.9    1.7e-37  129.2  37.9    1.1  1  MASE1     MASE1


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.7   0.0   5.8e-67   5.2e-63       2     236 ..     498     728 ..     497     730 .. 0.96

  Alignments for each domain:
  == domain 1  score: 212.7 bits;  conditional E-value: 5.8e-67
                 HHHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--CHHCC-C CS
         EAL   2 ealrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlspaslade 100
                 +++ +ale+++++l+ QP+  ++ ++  + e+l+r++ + g+l  p eflp+a ++gl  ++d+wv+e++l+ +++ ++   ++++l+inlsp sl+++
  CTQ29314.1 498 NRILKALEHDHFVLMAQPIQGIRGDR--YHEVLVRMEGESGELTGPNEFLPVAHEFGLSTRVDQWVIEHTLAFMDANRR-ALPGLRLAINLSPVSLSRS 593
                 67899***************999999..********************************************9999652.3899*************** PP

                 CHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHH CS
         EAL 101 efleelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalia 199
                 +f++e+++ll+++ + p+++++e+te+ +l++ e +  + l++LralG+r+a+ddfgtgy+s+++l+ +++di+K+d+s++++l  ++ + ++v+++++
  CTQ29314.1 594 QFPQEVEALLQAYNIEPWQIIFELTENYALSNPELVC-QTLEHLRALGCRVAIDDFGTGYASYARLKTMNVDILKIDGSFIRNLLASSLDYQVVDSICR 691
                 ***************************9999999999.************************************************************* PP

                 HHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT- CS
         EAL 200 lakelgikvvaegVeteeqlealrelgcdlvQGylls 236
                 la+  +++vvae Ve++e  +a+++lg+d++QGy ++
  CTQ29314.1 692 LARMKNMQVVAEYVESPEIRQAVITLGIDYMQGYDIG 728
                 *********************************9765 PP

>> MASE1  MASE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2  37.9   1.9e-41   1.7e-37       1     299 [.      15     319 ..      15     320 .. 0.97

  Alignments for each domain:
  == domain 1  score: 129.2 bits;  conditional E-value: 1.9e-41
       MASE1   1 llllllllyallialglslalalvssggvplW.lPsGlalaalllfgrrgwpgillaavlasislfllfagnlllalaiaavntleallgalllrrllp 98 
                 ++l+l+l+++ll++  + +++++  +  v l+ lP++l l+++++fg+ ++pgi+++ +l+       ++  l +++ +++++++  +l+++++r ++p
  CTQ29314.1  15 WALPLVLPALLLPVARWANTYTMLNGHMVFLYyLPLALVLSLMMFFGWAAIPGIIIGLLLTL-----AHGMMLEQSIGVLFHFLIPCVLCWGGYRIFVP 108
                 6799*****************999999999999*****************************.....******************************** PP

       MASE1  99 srnrletl........kdwllfvvaaaiiaalllaiiglalllllgliplaslssswltwwlgsatGvlvvaplllllrrylrqrhrlsafveqdlapl 189
                  r++++++         +w+ ++ +++++++ + a    + + + +   ++++s   l+ ++++++G l++ pl++++ r +r++++l++f +q   ++
  CTQ29314.1 109 QRQQVSHGnvrlmphrLFWQMLLPSVIFLILSQIAEYLGLHPRTTEMTGVTPFSLRSLITFQALMVGCLTGMPLCYFVLRVIRNPFHLRGFISQVRLQI 207
                 *************************************************************************************************** PP

       MASE1 190 aakllllfalllllllvllllllllpfednspla......yLllppvlwaAfrfgvrgaslallllavllilftaqgqgpfvqdsgaessaaillqlfl 282
                 + k++++ +++++ +l lll lll+p++d+s+++      +Ll+p++lw A+rfg+r++sl   +++ +li  +++  +++++++ +++++ai+ +++l
  CTQ29314.1 208 DPKIKKIEIICWATVLILLLWLLLMPLNDSSTIFstnytlSLLMPVMLWGAMRFGYRFISL---IWTPVLIAVIHFHYRYLPIYPSYNTQLAITSSSYL 303
                 *************************************************************...9********************************** PP

       MASE1 283 avlalvaLlvsaaiser 299
                 +++++va+  + + +++
  CTQ29314.1 304 VFSFIVAY-TAMLATQQ 319
                 ********.66666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5249.71
//
Query:       CTQ29315.1  [L=63]
Description: hypothetical protein CH1034_270026 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-32  110.9   0.5    2.3e-32  110.7   0.5    1.0  1  DUF2633          Protein of unknown function (DUF2633)
  ------ inclusion threshold ------
      0.017   14.8   0.1      0.018   14.7   0.1    1.0  1  Cation_ATPase_C  Cation transporting ATPase, C-terminus
      0.097   13.0   0.0       0.11   12.8   0.0    1.0  1  Sigma_reg_N      Sigma factor regulator N-terminal


Domain annotation for each model (and alignments):
>> DUF2633  Protein of unknown function (DUF2633)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.5   3.8e-36   2.3e-32       1      54 [.       9      62 ..       9      63 .] 0.97

  Alignments for each domain:
  == domain 1  score: 110.7 bits;  conditional E-value: 3.8e-36
     DUF2633  1 kRrRfntrlTrivLliSFLflFGRllYsaigawsHHqdkkqaqqielsveaeaq 54
                kR+Rfn r+TrivLliSFLf+FGR++Ys+igaw+HHqdkk +q ++l+ve ++ 
  CTQ29315.1  9 KRHRFNRRMTRIVLLISFLFFFGRFVYSSIGAWYHHQDKKASQESSLTVEPSPR 62
                7*************************************************9885 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   3.1e-06     0.018      34      83 ..       1      50 [.       1      58 [. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.1e-06
  Cation_ATPase_C 34 mkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgiseken 83
                     m++ P  +k + ++++m+r +l++++l+++  +++  +++++++++ k++
       CTQ29315.1  1 MSQAPSMRKRHRFNRRMTRIVLLISFLFFFGRFVYSSIGAWYHHQDKKAS 50
                     8899999*****************************99999776665543 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.9e-05      0.11       4      53 ..       7      57 ..       5      60 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.9e-05
  Sigma_reg_N  4 lkkakrksilrivlislivlllifvil.vvtllylaekegnklrevlelav 53
                 ++k+ r ++ ++ ++ li++l++f  + ++++ +  +++++k  +  +l+v
   CTQ29315.1  7 MRKRHRFNRRMTRIVLLISFLFFFGRFvYSSIGAWYHHQDKKASQESSLTV 57
                 566666666666666666666666666677777777777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 460.41
//
Query:       CTQ29316.1  [L=295]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-44  151.2   4.2    3.9e-44  150.5   4.2    1.3  1  LysR_substrate   LysR substrate binding domain
      3e-20   71.9   2.0    7.7e-20   70.6   2.0    1.8  1  HTH_1            Bacterial regulatory helix-turn-helix protei
     0.0014   17.7   0.2      0.039   13.1   0.0    2.4  2  PBP_like         PBP superfamily domain
     0.0016   17.8   0.1     0.0026   17.1   0.1    1.3  1  Glyco_trans_1_3  Glycosyl transferase family 1
  ------ inclusion threshold ------
      0.011   15.6   0.0        3.2    7.7   0.0    2.3  2  SulA             Cell division inhibitor SulA
       0.07   13.2   0.1       0.22   11.6   0.0    1.9  2  HemN_C           HemN C-terminal domain
      0.078   12.6   0.1       0.54    9.9   0.0    2.4  3  HTH_24           Winged helix-turn-helix DNA-binding
      0.083   12.8   0.0        2.3    8.2   0.0    2.9  4  MarR             MarR family
       0.14   12.0   0.0       0.31   10.9   0.0    1.5  1  P22_Cro          DNA-binding transcriptional regulator Cro


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   4.2   1.9e-47   3.9e-44       1     205 [.      89     291 ..      89     294 .. 0.95

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 1.9e-47
                     TTTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSS CS
  LysR_substrate   1 sgglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargep 95 
                     s++  g+L++g+  t++ +llppll+ +r+++P +++ +++g++ +++++++e++lDl+++++p + ++l ++  ++e++v + +      +   
      CTQ29316.1  89 SQEVNGSLTLGTGATACIHLLPPLLQHLRQQHPLLTVGVTTGNTLDIVRAVEENRLDLGLVTLPVQGRSLAVTAMLDEEFVTIYASRE--TEMPA 181
                     58999****************************************************************************9988884..56445 PP

                     E.CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEET CS
  LysR_substrate  96 v.sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrk 189
                     v ++++L+ +pli +e+gsg+rdl+++++r+agl++++++++ s+ea++++v+aGlG +++pr+av++  ++++l++  l++ +l r+l++v r+
      CTQ29316.1 182 VyTPAELQAQPLIAFEAGSGTRDLIDRWFRSAGLAVTPVMQLGSIEAIKRMVRAGLGYSIVPRMAVERVEDRDGLRVHSLAP-RLYRQLAVVMRQ 275
                     55********************************************************************************.************ PP

                     TCCCHHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidflr 205
                     ++  ++ ++ ++++l+
      CTQ29316.1 276 DKIVTKGIAEMLRLLH 291
                     **99999999988886 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   2.0   3.9e-23   7.7e-20       3      59 ..       8      64 ..       6      65 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 3.9e-23
                HHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  3 qlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                 l++f  v++ gsf++AA++Lg+sqpavs q+++LE+ l+++L+eRtgrg++ T+aG
  CTQ29316.1  8 NLATFRLVVQRGSFSAAADALGISQPAVSLQVRQLEQFLQTRLLERTGRGIKATAAG 64
                699*****************************************************9 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.032        63     133     185 ..     132     182 ..      76     184 .. 0.83
   2 !   13.1   0.0     2e-05     0.039      97     191 ..     194     289 ..     173     291 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.032
                 HHHHHCCHCCETTCCECCCGG-HCCCCCCECTTCE-EEEEEEEECTCCCSHHH CS
    PBP_like 133 hlavaaaVaagradvgvgieavaeelkgldfvplaeerydlvvrkealddpev 185
                  l++ +aV+ +r d g+ + +v  +  +l  + + +e++  ++  +  + p+v
  CTQ29316.1 132 TLDIVRAVEENRLDLGLVTLPVQGR--SLAVTAMLDEEFVTIYASRETEMPAV 182
                 5678999999999999999999975..78888888888888887777777765 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2e-05
                 EEE-TTSHHHHHHHHHHC-CEECTE-SSTTSEEESSHHHHHCCHCCETTCCE...CCCGG-HCCCCCCECTTCE-...EEEEEEEECTCCCSHHHHHHH CS
    PBP_like  97 vnRetGSGtrdlfdellkkegiskssikgyaqearshlavaaaVaagradvg...vgieavaeelkgldfvplae...erydlvvrkealddpevqafl 189
                 +  e+GSGtrdl+d++ + +g++   +     +  s  a++++V+ag +      +++e v ++ +gl    la    +++ +v+r+++   + ++++l
  CTQ29316.1 194 IAFEAGSGTRDLIDRWFRSAGLAVTPVM----QLGSIEAIKRMVRAGLGYSIvprMAVERVEDR-DGLRVHSLAPrlyRQLAVVMRQDKIVTKGIAEML 287
                 44589************99877764333....45677777777777765433222355666655.5666655555555666666666666666666666 PP

                 HH CS
    PBP_like 190 ef 191
                 ++
  CTQ29316.1 288 RL 289
                 65 PP

>> Glyco_trans_1_3  Glycosyl transferase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.3e-06    0.0026     249     305 ..       7      62 ..       3      74 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.3e-06
  Glyco_trans_1_3 249 eDLataraviagagftLmtealyLkkPlLavPvarqFeqvlnalyLerlgyGaavda 305
                       +Lat r v+  ++f+  ++al + +P +++ v rq eq l  + Ler g G++++a
       CTQ29316.1   7 GNLATFRLVVQRGSFSAAADALGISQPAVSLQV-RQLEQFLQTRLLERTGRGIKATA 62 
                      679***************************987.699***************99765 PP

>> SulA  Cell division inhibitor SulA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1    0.0083        17      31      56 ..      95     120 ..      68     126 .. 0.70
   2 ?    7.7   0.0    0.0016       3.2      68      99 ..     205     233 ..     200     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0083
        SulA  31 elvysedqPvltqlllPllqqlgqqs 56 
                  l       + ++ll Pllq+l qq 
  CTQ29316.1  95 SLTLGTGATACIHLLPPLLQHLRQQH 120
                 4555666678899**********995 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0016
        SulA  68 lsreWlqqaglPlekvvqlsqinplstvdame 99 
                 l  +W ++agl ++ v+ql +i++++    m+
  CTQ29316.1 205 LIDRWFRSAGLAVTPVMQLGSIEAIK---RMV 233
                 6678**************99887654...344 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.22      39      65 ..      40      65 ..      20      66 .. 0.78
   2 ?   -3.8   0.0       7.3   1.5e+04      41      50 ..     228     237 ..     225     237 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
      HemN_C 39 aaaleklqeqGLLeldggrlrltprGr 65
                + +le++ + +LLe +g+++++t +G+
  CTQ29316.1 40 R-QLEQFLQTRLLERTGRGIKATAAGM 65
                4.5***********************8 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 7.3
      HemN_C  41 aleklqeqGL 50 
                 a++++ ++GL
  CTQ29316.1 228 AIKRMVRAGL 237
                 6999999997 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00027      0.54      23      43 ..      24      44 ..      20      44 .. 0.89
   2 ?   -3.2   0.0       3.3   6.6e+03      28      43 ..     126     141 ..     125     142 .. 0.54
   3 ?   -1.6   0.0         1   2.1e+03      37      46 ..     228     237 ..     227     237 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00027
      HTH_24 23 LAerlglSpstvnrrlkrLee 43
                 A++lg+S+++v+ ++++Le+
  CTQ29316.1 24 AADALGISQPAVSLQVRQLEQ 44
                59*****************96 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.3
      HTH_24  28 glSpstvnrrlkrLee 43 
                 g++ ++++  ++  ee
  CTQ29316.1 126 GVTTGNTLDIVRAVEE 141
                 5666666666655444 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1
      HTH_24  37 rlkrLeeeGl 46 
                  +kr++++Gl
  CTQ29316.1 228 AIKRMVRAGL 237
                 69******96 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0012       2.3      24      43 ..      25      44 ..      20      45 .. 0.94
   2 ?   -3.8   0.0       6.3   1.3e+04      38      48 ..     160     170 ..     159     174 .. 0.70
   3 ?   -3.0   0.0       3.6   7.3e+03      37      46 ..     228     237 ..     227     237 .. 0.86
   4 ?    0.9   0.0      0.23   4.5e+02      11      35 ..     249     273 ..     245     281 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0012
                HHHHTS-HHHHHHHHHHHHH CS
        MarR 24 akklgvskstvtrvldrLek 43
                a++lg+s+++v+ ++++Le+
  CTQ29316.1 25 ADALGISQPAVSLQVRQLEQ 44
                789****************8 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.3
                 HHHHHHTTSEE CS
        MarR  38 ldrLekkGlie 48 
                 ++++ ++++++
  CTQ29316.1 160 VTAMLDEEFVT 170
                 56777788876 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.6
                 HHHHHHHTTS CS
        MarR  37 vldrLekkGl 46 
                 +++r++++Gl
  CTQ29316.1 228 AIKRMVRAGL 237
                 699**99997 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.23
                 HHHHSTTEEHHHHHHHHTS-HHHHH CS
        MarR  11 ilyeqgplsvseLakklgvskstvt 35 
                  ++++++l+v+ La +l+ + + v 
  CTQ29316.1 249 RVEDRDGLRVHSLAPRLYRQLAVVM 273
                 6788999**********99877765 PP

>> P22_Cro  DNA-binding transcriptional regulator Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015      0.31      10      27 ..      19      36 ..      13      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
                SSHHHHHHHHTS-HHHHH CS
     P22_Cro 10 GgvekvAkalgvtksAVs 27
                G+ +++A alg+++ AVs
  CTQ29316.1 19 GSFSAAADALGISQPAVS 36
                899**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2287.01
//
Query:       CTQ29317.1  [L=410]
Description: Major facilitator superfamily transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-14   53.5  50.6    7.5e-14   51.4  39.8    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4  39.8   4.2e-18   7.5e-14      11     317 ..      25     309 ..      14     316 .. 0.77
   2 !    8.4  13.8     5e-05       0.9      60     183 ..     262     388 ..     254     407 .. 0.76

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 4.2e-18
       MFS_1  11 arsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga.galfpagaa 108
                 ++++ g+++  a+a d g+s  +i l ltl +l +a+ s++++rl  rfG r v+  g ll a++++++++ +sl  ++ +++l+G+g+  +l+ a  a
  CTQ29317.1  25 SFYMPGTFAG-AIAADKGWSLPQIYLGLTLAMLMMAAVSPFVARLLARFGGRLVVTSGTLLIAASCAMMAWRPSLAGWYGAWLLTGIGMrLSLYDALFA 122
                 3444444444.99****************************************888888888888677777455559************8888889999 PP

       MFS_1 109 liadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdp 207
                 +++ ++ + +  + i+ ++++ +l+++l  +lg +l++   W+ +  i a+++ll+++   l +  ++ + +    ++       +p++   +  +++ 
  CTQ29317.1 123 AVVNLYGQ-QARKTISHITLAGGLASALFWPLGEALLTIMPWQNALRIYALFGLLSAW---LSYQLPRQRLSS--AAKS----PASPATA-EGD-RRNG 209
                 99999999.89999******************************************55...444333333333..3333....3344444.333.3444 PP

       MFS_1 208 vlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllv 306
                   ++++ial++f  + +g++t+lp +  +++gl+  + +g+l ++++ ++  + +lag    r    + l+l+ + +l++ l+++l   +++++ ++++
  CTQ29317.1 210 ARYAIFIALITF--ISNGTSTHLPEF-ISHFGLP--VAVGMLWGFGQTGARLGEVLAGP---R---VTSLTLTRFTALAMPLCFLLGLSSTTYAGCAAG 297
                 333466666666..9**********9.*******..99998899999998555555554...3...567888888888888888888888778888888 PP

       MFS_1 307 lvl.iGfglgfv 317
                 +vl +G   g+v
  CTQ29317.1 298 FVLgYGAINGLV 309
                 877666666655 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 5e-05
       MFS_1  60 Grrrvlllglllfalg.lllllfa.sslw.lllvlrvlqGlga..galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWrav 153
                 G+r + l+   ++al+  l++l++ ss + + +++ ++ G ga  g+++ + a+l  ++f+ e  ++ +gll +  +l a++ p + ++l + lg  + 
  CTQ29317.1 262 GPRVTSLTLTRFTALAmPLCFLLGlSSTTyAGCAAGFVLGYGAinGLVTIVKATLPLALFSAESYASRTGLLLIPGQLMAAVSPFAYAWLNHRLGIIGG 360
                 5555555555555666223333334555659***********998999999999999****************************************** PP

       MFS_1 154 fyilaivsllafvlfllllpeepperkrks 183
                 +++ ++++l+++ l  +l ++++  ++ ++
  CTQ29317.1 361 MWVSTGLTLIVAGL--ALAMVREAGKAQDE 388
                 ***********665..44444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2991.49
//
Query:       CTQ29318.1  [L=392]
Description: Anaerobic sulfatase-maturating enzyme homolog AslB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-10   41.9   0.0    2.2e-10   41.1   0.0    1.2  1  Radical_SAM  Radical SAM superfamily
    6.6e-08   33.0   0.1    1.7e-07   31.7   0.1    1.7  1  SPASM        Iron-sulfur cluster-binding domain
     0.0046   17.2   0.0     0.0046   17.2   0.0    1.8  2  Fer4_12      4Fe-4S single cluster domain
  ------ inclusion threshold ------
      0.046   14.2   0.3       0.11   13.0   0.3    1.6  1  DUF1284      Protein of unknown function (DUF1284)
      0.048   13.7   0.2      0.092   12.8   0.2    1.4  1  DUF3641      Protein of unknown function (DUF3641)


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   6.2e-14   2.2e-10       5     151 ..      14     164 ..      12     173 .. 0.76

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 6.2e-14
                  SEESS--TTTSCCTT...HHHHHHHHHHHHHHHHHHHHHHHHHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC..CCTEEEEEEECSSCHGHHHHHH CS
                  xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   5 rgCnlrCsfCarpet...vrregrgrslsveeileevkelkaekg.vkevilgggepllypdfvellerlakla..vpgiritvetngtlpdeekler 96 
                  + Cnl+C++C   e       + +  +l++e  ++   +     + v+++++gg   l   df  ++ +l ++   ++ i +++ tng+l+++++++ 
   CTQ29318.1  14 NRCNLACRYCLYLENevpRPGYATMDDLTLEAYIHNTISS-TPSQnVEFCWQGGEPTLCGLDFFAKVVELQQRYrgNKIIANSLQTNGILLNDKWARF 110
                  68************85444444444444444444444444.566635555555555556699999999999988999**************8888888 PP

                  HHHTT-SEEEEEEBSSSHH.HHHHHHT.CTSHHHHHHHHHHHHHHTTSETEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  97 llelgvdrvslgleaadde.kvlklmn.rghtfeevlealeklreagikrvvdrivg 151
                  l++ g   v l+++ + +  ++ + ++ +++t+e+v++a++ l +++++ v + +v+
   CTQ29318.1 111 LRRHG-FLVGLSIDGPASLhDTWRTTGcGKPTWEKVVQAIRCLQQHDVP-V-NAMVV 164
                  88888.9999999999988767888889*******************99.3.33333 PP

>> SPASM  Iron-sulfur cluster-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   4.6e-11   1.7e-07       4      68 .]     253     313 ..     247     313 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 4.6e-11
       SPASM   4 psrslfInsdGdVvpCcvdkktyveelklGnireesleeIwnseeyqefrkskkfplielCrnCp 68 
                   +sl ++ +GdV+ C   ++ ++ e+klGn++++ ++ + +s+  q+f  ++k +l   C+ C+
  CTQ29318.1 253 CGQSLLVEQNGDVYSC---DHFVSAEYKLGNLKQDAMAAMASSPFQQQFG-KQKGQLSARCQGCH 313
                 468899**********...5666667**************99999999**.667777788**996 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.3e-06    0.0046      14     115 ..      15     118 ..      13     135 .. 0.63
   2 ?   -3.4   0.8       3.1   1.1e+04      11      17 ..     308     314 ..     301     333 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.3e-06
     Fer4_12  14 gCnlsCkgCfnketwsfksgkef..tkelleeiiedlkk..esiegltllGGEPllpenaeallelvkevkeekpekdiwlytgytleelskkekeell 108
                 +Cnl+C++C   e   ++ g  +  + +l++ i + ++   +++ ++   GGEP l    + ++++v+  ++    ++i++ +  t+  l+++++ ++l
  CTQ29318.1  15 RCNLACRYCLYLENEVPRPGYATmdDLTLEAYIHNTISStpSQNVEFCWQGGEPTL-CGLDFFAKVVELQQRYRG-NKIIANSLQTNGILLNDKWARFL 111
                 7********97777766655444224555555555554432666888889******.455555555544333333.35666666666666666777888 PP

     Fer4_12 109 keidvlv 115
                 + + +lv
  CTQ29318.1 112 RRHGFLV 118
                 8877665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.1
     Fer4_12  11 fvsgCnl 17 
                 + +gC  
  CTQ29318.1 308 RCQGCHW 314
                 4455543 PP

>> DUF1284  Protein of unknown function (DUF1284)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3     3e-05      0.11      33     102 .]     245     318 ..     239     318 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3e-05
     DUF1284  33 diCsacpn..kkelCeeeekvkelDrkvlealgleegeelkleelle.kvkeki.leekklkeiCgeCeWkelc 102
                 ++C+  p   ++ l+e++ +v + D+ v + ++l + ++  ++++++   ++++ +++++l++ C++C+W+  c
  CTQ29318.1 245 TLCTMQPVcgQSLLVEQNGDVYSCDHFVSAEYKLGNLKQDAMAAMASsPFQQQFgKQKGQLSARCQGCHWRFAC 318
                 67888777322444599***********99998876655444444430444444256789**********9877 PP

>> DUF3641  Protein of unknown function (DUF3641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   2.6e-05     0.092      67     124 ..     251     312 ..     218     321 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.6e-05
     DUF3641  67 lmCrsllsvdwdGklydCdfnqmlelklkkkekltikdlleee....lekreiavaehCygC 124
                  +C + l v+ +G +y Cd    +e kl + ++  ++ ++++       k++ ++++ C gC
  CTQ29318.1 251 PVCGQSLLVEQNGDVYSCDHFVSAEYKLGNLKQDAMAAMASSPfqqqFGKQKGQLSARCQGC 312
                 479***********************996666656655554442222667788889999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3132.79
//
Query:       CTQ29319.1  [L=622]
Description: Choline-sulfatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-42  144.4   0.7    8.1e-42  143.7   0.7    1.4  1  Sulfatase      Sulfatase
    3.6e-06   26.8   0.2      0.046   13.3   0.0    2.3  2  Phosphodiest   Type I phosphodiesterase / nucleotide pyrophos
    0.00025   21.3   0.2    0.00067   19.9   0.2    1.8  1  DUF4976        Domain of unknown function (DUF4976)
     0.0038   15.9   0.0     0.0055   15.4   0.0    1.2  1  DUF229         Protein of unknown function (DUF229)
     0.0055   17.4   0.2      0.012   16.3   0.2    1.5  1  Sulfatase_C    C-terminal region of aryl-sulfatase
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.21   10.9   0.0    1.4  1  Metalloenzyme  Metalloenzyme superfamily


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   0.7   2.7e-45   8.1e-42       2     308 ..      61     433 ..      60     434 .. 0.86

  Alignments for each domain:
  == domain 1  score: 143.7 bits;  conditional E-value: 2.7e-45
                 EEEEEEESSE-TTGSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTT..HHCTTTS-HHHHHHHHTT-EEEE CS
   Sulfatase   2 nvvliladdlgagdlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgg..gglpqteatLpellkeaGYntaa 98 
                 n++li+ d+ ++    +  ++ +  p  +rl++ g++ftn+  +a++c+psr+ + tg+  +++++ +n +++     l ++  t++ +++e GY+ta+
  CTQ29319.1  61 NILLITCDQERY----FERYPFP-VPGRERLMKTGITFTNHQNTANVCTPSRSVMYTGLHMPHTRMFDNLGFPWmnYDLDPELRTVGHMMRELGYYTAY 154
                 788888888876....4566666.68899*****************************************99999999********************* PP

                 EEES-SCCSGGGSHHC....CTTTSEEEETSSSCHHTCCCCCCCCCECTCCC...............TTTTCSHHHHHHHHHHHHH......HCCCTSS CS
   Sulfatase  99 igkwhlgwssrqsvyk....nrgfdrflgfptgsaalkdpekseyngevlrv...............ppeggysddrlldealefl......larndkp 172
                  gkwhl+    q v+     + +  +    +++ + ++  e          +               ++ g+ +d + + +++ +l      l+ ++kp
  CTQ29319.1 155 KGKWHLTREIDQPVAGksveEMDLGE----IPTPRLHEIME----------KygfsdyhgigdvigkSKGGYFFDSVTTGQTISWLrntgrpLNDENKP 239
                 *******8888887776655222222....22222222222..........1222222222344666888999999************99988878*** PP

                 EEEEEEE-TTSSSTCTCGGHTCCGSTTTTCCCCCCH.............................................................HH CS
   Sulfatase 173 fflylatlapHappeapdeyakkyatffddgseaar.............................................................ql 210
                 +f+ + + +pH   + + + +++  +++ + ++++                                                              +l
  CTQ29319.1 240 WFAAVNLVNPHDVMFIDTDEHGEQVQWKGPMDKENHtllptqpphnqiyqqswpdyplpanrhqpldepgrpaahkeyqnaravmegqfpdedrrwrKL 338
                 ************999999999998888888888766788889999999999999999999*************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCEEECSEEEGGGHHHHHHHHTT CS
   Sulfatase 211 leaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekaprvseelvshiDlfptildlag 308
                 l+ y+n+++ +D++++ +l++L+ ++l +nt++vft+Dhg+     + ++ +gkg++ y+++++vP++++ p    + + + l++h Dl+pt+ +l+g
  CTQ29319.1 339 LDYYFNCIRDNDQHLEAILNELDNLQLTQNTIIVFTADHGELG---GSHQMHGKGSSVYKEQIHVPMIIRHPAYPGNIRCNSLTNHLDLVPTLIGLTG 433
                 *****************************************55...4566677777*********************999***************998 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   5.5e-05      0.17      12      66 ..      71     124 ..      62     158 .. 0.88
   2 !   13.3   0.0   1.5e-05     0.046     201     233 ..     346     378 ..     253     402 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.5e-05
                   THHHHHGSTSHHHHHHHHHSEEESEEE-SSS-SHHHHHHHHHHSS-HHHHS--SS CS
  Phosphodiest  12 dlldrlaellpnlaaLakegvsapnlrpvfPtlTfpnhaslvTGlyPgeHGivgN 66 
                   ++++r+  + p+ ++L+k+g++++n+ ++++  T p+ + ++TGl+  ++ +++N
    CTQ29319.1  71 RYFERYPFPVPGRERLMKTGITFTNHQNTANVCT-PSRSVMYTGLHMPHTRMFDN 124
                   5888866799999******************999.789***************98 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.5e-05
                   HHHHHHHHHHHHHHHHHTTGTTTEEEEEEES-- CS
  Phosphodiest 201 lrrvDkaigdLlealderglsaetniilvSDHG 233
                   +r+ D++++ +l++ld  +l+++t i+ ++DHG
    CTQ29319.1 346 IRDNDQHLEAILNELDNLQLTQNTIIVFTADHG 378
                   7899****************************9 PP

>> DUF4976  Domain of unknown function (DUF4976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   2.2e-07   0.00067      58      99 ..     548     590 ..     518     593 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.2e-07
     DUF4976  58 didewelyDlkkDpkelknlyddp.eyeevvkelkkkleelrk 99 
                 +++  el+Dl +Dp+e +nl  +p +y+++  ++++kl++l +
  CTQ29319.1 548 ENNDVELFDLVNDPEENHNLAREPeKYRDLLMTMNDKLNQLTA 590
                 45678***************99873699***********9875 PP

>> DUF229  Protein of unknown function (DUF229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.8e-06    0.0055     304     371 ..     339     403 ..     334     458 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.8e-06
      DUF229 304 shdkfnllealDedllkylkklekkgllentlvlllsDHGlrfgklrktsqGilEerlPlmlirlPpw 371
                  + +fn ++  D+ l ++l +l++ +l +nt++++ +DHG   g++++  +G    + ++++   P  
  CTQ29319.1 339 LDYYFNCIRDNDQHLEAILNELDNLQLTQNTIIVFTADHGELGGSHQMHGKGSSVYKEQIHV---PMI 403
                 56799***********************************9888888887777666666543...444 PP

>> Sulfatase_C  C-terminal region of aryl-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2     4e-06     0.012      50      91 ..     548     589 ..     523     597 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4e-06
                  EECCEEEEETTT-TT--S-TTSTTCCHHHHHHHHHHHHHHHC CS
  Sulfatase_C  50 ehdpPllFdlerDpsEkyplsaespeykevlkeikkaveehk 91 
                  e++   lFdl +Dp+E+++l++e ++y+++l ++++ ++++ 
   CTQ29319.1 548 ENNDVELFDLVNDPEENHNLAREPEKYRDLLMTMNDKLNQLT 589
                  5666679**************999**********99988865 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.9e-05      0.21     153     216 ..     341     434 ..     330     456 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.9e-05
                    HHHHHHHHHHHHHHHHHTTS-T....TTEEEEEE-SSB-...-TTTSS..................................-----EEEEEESTT CS
                    xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx...xxxxxxxxx..........................xxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 153 atiaaieaaDeavkeildaieq....vdgilvvtADHgn...aedmvkrdk..........................qplTsHtlepVPilivgkg 215
                     + + i + D+ ++ il+++++    +++i+v tADHg      +m++  k                          ++lT+H l+ VP li+ +g
     CTQ29319.1 341 YYFNCIRDNDQHLEAILNELDNlqltQNTIIVFTADHGElggSHQMHG--KgssvykeqihvpmiirhpaypgnircNSLTNH-LDLVPTLIGLTG 433
                    567889999999999998877432336679999****86222566666..245999999999999999999999999999999.789999988766 PP

                    - CS
                    x RF
  Metalloenzyme 216 l 216
                     
     CTQ29319.1 434 R 434
                    4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4599.52
//
Query:       CTQ29320.1  [L=525]
Description: GMP synthetase (glutamine aminotransferase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-44  148.5   0.0      1e-43  147.3   0.0    1.7  1  GMP_synt_C     GMP synthase C terminal domain
    3.3e-42  144.4   0.0    4.8e-42  143.9   0.0    1.2  1  GATase         Glutamine amidotransferase class-I
    5.8e-10   39.3   0.0    1.2e-09   38.3   0.0    1.5  1  Peptidase_C26  Peptidase C26
    6.9e-09   35.2   0.1    1.1e-06   27.9   0.1    2.3  2  NAD_synthase   NAD synthase
    1.4e-05   24.1   0.1    6.7e-05   21.8   0.1    1.9  2  tRNA_Me_trans  tRNA methyl transferase
     0.0031   17.1   0.1     0.0054   16.3   0.1    1.3  1  ThiI           Thiamine biosynthesis protein (ThiI)
     0.0045   16.7   0.0      0.026   14.2   0.0    1.9  2  Asn_synthase   Asparagine synthase
  ------ inclusion threshold ------
       0.01   15.4   0.0        2.9    7.4   0.0    2.5  3  QueC           Queuosine biosynthesis protein QueC
      0.016   15.0   0.0        0.1   12.4   0.0    2.2  1  SNO            SNO glutamine amidotransferase family
       0.13   12.3   0.0       0.25   11.4   0.0    1.5  1  PAPS_reduct    Phosphoadenosine phosphosulfate reductase fami
       0.16   11.7   0.0       0.33   10.7   0.0    1.7  1  ATP_bind_3     PP-loop family


Domain annotation for each model (and alignments):
>> GMP_synt_C  GMP synthase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.3   0.0   6.3e-47     1e-43       1      92 []     433     524 ..     433     524 .. 0.99

  Alignments for each domain:
  == domain 1  score: 147.3 bits;  conditional E-value: 6.3e-47
                 CCCCTTT-GGGSSEEEEEEEEEEE----------EEEEEEEEE---------B----HHHHHHHHHHHHHHSTT---EEEE---TTTS-S-- CS
  GMP_synt_C   1 eelkkaglykkiwQafavllpvksvGvmgdkRtyeyvvalRaveseDamtadvaelpyevLekissrivnevkgvnrvvyditskPpatiEw 92 
                 eel+ka+ly+k++Qaf+v+lpv+svGvmgd R+y++vv lRave+ D+mta++a+lpy++L ++s+ri+nev+g++rvvydi+ kPpatiEw
  CTQ29320.1 433 EELHKADLYNKVSQAFTVFLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGISRVVYDISGKPPATIEW 524
                 799***************************************************************************************** PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.9   0.0   2.9e-45   4.8e-42       2     188 ..      12     199 ..      11     201 .. 0.94

  Alignments for each domain:
  == domain 1  score: 143.9 bits;  conditional E-value: 2.9e-45
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekeh 100
                 ++D+++++t+ ++++++elgv++e++ +d +  +i+  + np gi++sgGp s + e++++a ++++e+++P++G+C+GmQ +a ++g++v+  +e+e 
  CTQ29320.1  12 ILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIR--EFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEGSNEREF 108
                 79***************************9999995..69****************************************************9999*** PP

                 EEEEEEEEETTT.......CGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTT.EEEESSBTTSTTSTTHHHHHHHHHH CS
      GATase 101 hggtmrlgddet.......allyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknp.fvgvQFHPEststpegpellfnfli 188
                   ++ ++ +d++       +l+ + k+ ++++++H+++v+     pa+++ +a + d+    +i+ ++++ f+gvQFHPE+t+t +g ++l++f+ 
  CTQ29320.1 109 GYAQVEVVNDSAlvrgiedSLTADGKPLLDVWMSHGDKVTA---IPADFVTVAST-DN-CPFAIMANEEKrFYGVQFHPEVTHTRQGMRMLERFVR 199
                 *********999******98888999**************9...*****887777.65.589999999966*********************9975 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   7.4e-13   1.2e-09     102     216 .]      76     183 ..      71     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 7.4e-13
  Peptidase_C26 102 lergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaikelaeelrveAvaeDgviE 197
                     e+gvP++g+C G+q ++++lGG++  + e++ g   + + e ++ s  v+  ++sl a+       +v   H   ++ +  ++  +A ++D+   
     CTQ29320.1  76 FEAGVPVFGVCYGMQTMAMQLGGHVEGSNEREFG---YAQVEVVNDSALVRGIEDSLTADGKP--LLDVWMSHGDKVTAIPADFVTVA-STDNCPF 165
                    6899*******************99887775333...33445567777777777777776544..799****************7776.5799999 PP

  Peptidase_C26 198 aieseeakafvlgvQwHPE 216
                    ai ++e+k  ++gvQ+HPE
     CTQ29320.1 166 AIMANEEK-RFYGVQFHPE 183
                    99999966.99*******9 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1     7e-10   1.1e-06       8      50 ..     217     258 ..     211     301 .. 0.74
   2 !    4.9   0.0    0.0074        12     148     177 ..     373     402 ..     368     405 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 7e-10
                   HHHHHHHHCTTSEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEE CS
  NAD_synthase   8 flkeyvkkagakgvvlGlSGGvDSslvaalavkalgkenvlal 50 
                    ++   ++ g ++v+lGlSGGvDSs+ a+l  +a+gk+  + +
    CTQ29320.1 217 AVERIRQQVGDDKVILGLSGGVDSSVSAMLLHRAIGKN-LTCV 258
                   455555677889***********************764.4444 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0074
                   BETTTTS-HHHHHHHHHHTT--HHHHCS-- CS
  NAD_synthase 148 lapiaellKtevkeLakelnvPervlkkpP 177
                   ++p+ el+K ev+++  el+ P  +l ++P
    CTQ29320.1 373 VEPLRELFKDEVRKIGLELGLPYDMLYRHP 402
                   68**********************999988 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   4.1e-08   6.7e-05       2      34 ..     229     262 ..     228     275 .. 0.84
   2 ?   -0.6   0.0      0.28   4.6e+02     165     186 ..     373     394 ..     364     397 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.1e-08
  tRNA_Me_trans   2 kvvvalSgGVDSsvaaallkeq.gyevigvflkl 34 
                    kv+ +lSgGVDSsv+a+ll+++ g++++ vf+ +
     CTQ29320.1 229 KVILGLSGGVDSSVSAMLLHRAiGKNLTCVFVDN 262
                    8******************997357788887765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.28
  tRNA_Me_trans 165 lfPlgeltKeevrkiAkeagla 186
                    + Pl el K+evrki  e gl+
     CTQ29320.1 373 VEPLRELFKDEVRKIGLELGLP 394
                    569************9999886 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   3.3e-06    0.0054       4      52 ..     228     277 ..     225     293 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.3e-06
        ThiI   4 gkvlaLlSgGiDSpVaaylllkR..Gcrvvlvhlknepgtseeaiekvekl 52 
                 +kv++ lSgG+DS V+a ll  R  G +  +v+++n +   +ea++++e+ 
  CTQ29320.1 228 DKVILGLSGGVDSSVSAMLLH-RaiGKNLTCVFVDNGLLRLNEAQQVMEMF 277
                 689999**********96655.53699*************99999999876 PP

>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.34   5.5e+02      11      31 ..      43      63 ..      40      64 .. 0.85
   2 !   14.2   0.0   1.6e-05     0.026       6      47 ..     214     257 ..     211     298 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.34
  Asn_synthase 11 krrlradvpvGalLSGGlDSS 31
                  + + r   p G+ LSGG  S+
    CTQ29320.1 43 EAQIREFNPSGIILSGGPEST 63
                  67899999*********7776 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.6e-05
  Asn_synthase   6 LedaVk..rrlradvpvGalLSGGlDSSliaalaarqsksplkt 47 
                   ++daV+  r+ ++d +v + LSGG+DSS+ a+l+ r   ++l++
    CTQ29320.1 214 IDDAVEriRQQVGDDKVILGLSGGVDSSVSAMLLHRAIGKNLTC 257
                   5777772257799****************999999876655554 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.1   5.1e+03       4      14 ..      54      64 ..      54      65 .. 0.90
   2 ?    7.4   0.0    0.0018       2.9       1      35 [.     229     264 ..     229     310 .. 0.73
   3 ?    5.2   0.0    0.0078        13     146     178 ..     355     396 ..     332     399 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.1
                EE--SSHHHHH CS
        QueC  4 vllSGGlDStt 14
                ++lSGG  Stt
  CTQ29320.1 54 IILSGGPESTT 64
                589******98 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0018
                 EEEEE--SSHHHHHHHHHHHHH-.SEEEEEEEESS- CS
        QueC   1 kavvllSGGlDSttvlalakkeg.kevealtfdYgq 35 
                 k+++ lSGG+DS++ ++l ++++ k+++++ +d g 
  CTQ29320.1 229 KVILGLSGGVDSSVSAMLLHRAIgKNLTCVFVDNGL 264
                 57888*********9998887643777777777665 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0078
                 HH.........HTS--EEE-TTTT--HHHHHHHHHHTTHHHH CS
        QueC 146 lg.........edkkieieaPlidlsKaeivklgkelgvple 178
                 +          ++ k+ ++ Pl +l K e+ k+g elg+p++
  CTQ29320.1 355 IKshhnvgglpKEMKMGLVEPLRELFKDEVRKIGLELGLPYD 396
                 2233444466688999**********************9986 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.4e-05       0.1      64     186 ..      75     201 ..      53     203 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.4e-05
                 HHTT.--EEEETHHHHHHCCEETTB....SS-SS--CCEEEET.TTT-SCCGEEEEEEEETTTCSEEEEEESS.--EEEEE-.TTTCEEEEECTT..EE CS
         SNO  64 vknsekvvlGtCaGlillskelene....lvktlellkvkvkr.nafGrqvdsfekeldfknliekftavfir.aPvieeilddeavkvlyeldg..ei 154
                 v ++  +v+G C G+  ++ +l+++    + ++++  +v+v    a  r ++ +  + d k     +  v++     +  i   + v+v++  +    i
  CTQ29320.1  75 VFEAGVPVFGVCYGMQTMAMQLGGHvegsNEREFGYAQVEVVNdSALVRGIEDSL-TADGKP----LLDVWMShGDKVTAIP-ADFVTVASTDNCpfAI 167
                 5566678999999998888888766555466778888887654145556554322.123333....4445544044555554.6777888877755477 PP

                 EEEEETTEEEESS-GGGST..THCHHHHHHHHHH CS
         SNO 155 vvakqkkilatsfhPelae..ddirvhdyfveev 186
                 ++ + k++ ++ fhPe++   +++r+ + fv+++
  CTQ29320.1 168 MANEEKRFYGVQFHPEVTHtrQGMRMLERFVRDI 201
                 777799**********986336899999999986 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015      0.25       2      68 ..     230     298 ..     229     319 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
                  EEEE--SSCTCHHHHHHHHHHCTT.HEEEEEE-STB.-HHHHHHHHHHHHHTT-EEEEEE-SCHHHHHH CS
  PAPS_reduct   2 lvvsvsgGkdslVllhLalkafkp.vpvvfvdtghe.fpetiefvdeleeryglrlkvyepeeevaeki 68 
                  +++  sgG ds+V   L+ +a  +  + vfvd g    +e  + ++ + +++gl++  +e e+++ +++
   CTQ29320.1 230 VILGLSGGVDSSVSAMLLHRAIGKnLTCVFVDNGLLrLNEAQQVMEMFGDHFGLNIVHVEGEQRFLDAL 298
                  56778********98887777666379******975267777777778888899966555555555555 PP

>> ATP_bind_3  PP-loop family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0002      0.33       1      53 [.     229     277 ..     229     395 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
                 EEEEE--SCHHHHHHHHHHHHHCTTTTTEEEEEEEE-SSSTCHHHHHHHHHHH CS
  ATP_bind_3   1 kvlvAvSgGlDSmaLllllaklkkklgiklvaihvdhglreeskeeaelvkel 53 
                 kv++++SgG+DS +  +ll++     g +l+++ vd gl    +e +++++ +
  CTQ29320.1 229 KVILGLSGGVDSSVSAMLLHRAI---GKNLTCVFVDNGLLRL-NEAQQVMEMF 277
                 5899**********999999984...4589999999987533.2333444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 4025.48
//
Query:       CTQ29321.1  [L=488]
Description: IMP dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.2e-160  534.2   8.3   1.4e-160  534.0   8.3    1.0  1  IMPDH         IMP dehydrogenase / GMP reductase domain
    2.6e-17   63.0   2.1    5.8e-09   36.3   0.1    3.6  3  CBS           CBS domain
      9e-11   41.7  13.4    1.6e-05   24.5   8.2    2.4  2  NMO           Nitronate monooxygenase
    1.8e-08   33.8   8.2    2.3e-08   33.5   5.2    2.3  2  FMN_dh        FMN-dependent dehydrogenase
    0.00039   19.9   4.0     0.0065   16.0   4.0    2.4  1  His_biosynth  Histidine biosynthesis protein
     0.0031   16.9   7.1     0.0031   16.9   7.1    2.5  4  ThiG          Thiazole biosynthesis protein ThiG
     0.0059   15.8   6.5     0.0059   15.8   6.5    1.7  2  Glu_synthase  Conserved region in glutamate synthase
     0.0063   15.7   4.0      0.043   13.0   4.0    2.5  1  NanE          Putative N-acetylmannosamine-6-phosphate epimer
     0.0092   15.3   5.5      0.014   14.8   3.2    2.1  2  TMP-TENI      Thiamine monophosphate synthase
  ------ inclusion threshold ------
      0.012   16.0   0.2          3    8.2   0.0    2.5  2  Radical_SAM   Radical SAM superfamily
      0.039   13.2   9.3      0.036   13.3   3.1    2.3  2  DHO_dh        Dihydroorotate dehydrogenase
       0.19   10.6   2.5        0.5    9.2   0.0    2.4  3  PK            Pyruvate kinase, barrel domain
       0.67    9.3   3.0       0.47    9.9   0.4    2.0  3  G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
        1.1    8.6   5.6       0.47    9.8   0.7    2.5  3  Aldolase      KDPG and KHG aldolase


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  534.0   8.3  1.1e-163  1.4e-160       1     345 []       8     473 ..       8     473 .. 0.99

  Alignments for each domain:
  == domain 1  score: 534.0 bits;  conditional E-value: 1.1e-163
                 E--GGGEEEE---B-S-GGGSB--EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTS................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
       IMPDH   1 gltfddvllvpaksevlpkevdlktkltkkiklniPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrs................. 82 
                 +ltfddvllvpa+s+vlp+++dl+t+ltk+i+lniP++saamdtvte+++Aiala+eGgig+ihkn+sie+qaeev++vk++                 
  CTQ29321.1   8 ALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPMLSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHesgvvtdpqtvlptttl 106
                 69************************************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       IMPDH  83 ................................................................................................... 82 
                                                                                                                    
  CTQ29321.1 107 revkelterngfagypvvteenelvgiitgrdvrfvtdlnqpvsvymtpkerlvtvregesrevvfakmhekrvekalvvdesfhlrgmitvkdfqkae 205
                 *************************************************************************************************** PP

                 ..TTSXBXTTSXB-EEEEE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-STT CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  83 ..pnaakdekgrllvgaavgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpGsi 179
                   pna+kde+grl+vgaavg+ + ++erv+alv+agvdvl++ds+hghse+vl+ ++e ++k++++++i+Gnvat +ga+aL+eag  avkvGiGpGsi
  CTQ29321.1 206 rkPNACKDEQGRLRVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGGNVATGAGARALAEAGCSAVKVGIGPGSI 304
                 *************************************************************************************************** PP

                 BHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEETTEEEEEEEETTSHHHHHH-SS-TTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 180 CttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspgeviliegrkyKeyrGmgslgamkkgskdryf 278
                 Cttr+v+gvGvpq+tAv++++ea + +g+pviaDGGi++sgdi+kA+aaGa avm+Gs+lagteEspge+ l++gr+yK+yrGmgslgam+kgs+dryf
  CTQ29321.1 305 CTTRIVTGVGVPQITAVSDAVEALEGTGIPVIADGGIRFSGDIAKAIAAGAAAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLGAMSKGSSDRYF 403
                 *************************************************************************************************** PP

                 -...-...-SS-SBEEEEEE--B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH-EEEEE-HHHHHHHS-- CS
                 x.xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 279 q.kke...klvpeGvegrvpykgsvkevveqlvgglrsgmgylGaktieelkekakfvritaaglkeshvH 345
                 q + +   klvpeG+egrv+ykg++ke+++q +gglrs+mg +G+ ti+ l++ka+fvri+ ag++eshvH
  CTQ29321.1 404 QsD-NaadKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTIDLLRTKAEFVRISGAGIQESHVH 473
                 *52.2345**************************************************************9 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.1   4.5e-12   5.8e-09       7      52 ..      95     140 ..      83     145 .. 0.91
   2 !   21.2   0.2   2.4e-07    0.0003       5      52 ..     153     202 ..     142     206 .. 0.84
   3 ?    3.1   0.0       0.1   1.3e+02      15      40 ..     317     340 ..     302     345 .. 0.73

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 4.5e-12
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDll 52 
                 +d+ tv p+ttl+e+ el +++g+ ++PVV e+++lvGi+t rD+ 
  CTQ29321.1  95 TDPQTVLPTTTLREVKELTERNGFAGYPVVTEENELVGIITGRDVR 140
                 6888***************9999*******99999*********96 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 2.4e-07
                 SBS..SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHH CS
         CBS   5 mtr..dvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDll 52 
                 mt+  ++vtv++ ++ e ++ +m ek+v   +VVde+ +l G++t +D  
  CTQ29321.1 153 MTPkeRLVTVREGESREVVFAKMHEKRVEKALVVDESFHLRGMITVKDFQ 202
                 5665588****************999986555****************75 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.1
                 TSB.HHHHHHHHHHHTSSEEEEEETTT CS
         CBS  15 dtt.leealelmrekgvsrlPVVdedg 40 
                 + t +++a+e +  +g  ++PV+ + g
  CTQ29321.1 317 QITaVSDAVEAL--EGT-GIPVIADGG 340
                 44559*******..775.****95444 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   3.1e-07    0.0004       2      59 ..      32      88 ..      31     243 .. 0.86
   2 !   24.5   8.2   1.2e-08   1.6e-05     186     232 ..     319     371 ..     273     378 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.1e-07
         NMO  2 slltellkikppvvqpgmggiskarLaaavsnaGgLGvlasgyltaDrlakeirkvka 59
                ++lt+ +  + p+  + m  +++arLa a +++Gg+G++    ++  r a+e+r+vk+
  CTQ29321.1 32 TQLTKTIRLNIPMLSAAMDTVTEARLAIALAQEGGIGFIH-KNMSIERQAEEVRRVKK 88
                578999999******************************9.88999999****99986 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1.2e-08
         NMO 186 pqvldavd......iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesd 232
                   v dav+      iPviA GGi    ++a a+a+GA++v +g+ + +t+es+
  CTQ29321.1 319 TAVSDAVEalegtgIPVIADGGIRFSGDIAKAIAAGAAAVMVGSMLAGTEESP 371
                 45667777777****************************************97 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   5.2   1.8e-11   2.3e-08     217     301 ..     271     362 ..     177     370 .. 0.79
   2 ?    0.3   0.0      0.22   2.9e+02     315     343 ..     427     455 ..     421     458 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 1.8e-11
                 SEEEEEEE-SHHHHHHHHHTTESEEEE--GGG.....TSSTT-.--HHHCHHHHHHHH..S.S-EEEESS--SHHHHHHHHHTT-SEEEESH CS
      FMN_dh 217 lplvvKGvltaedakraveaGvdgivvSNHGG.....Rqldga.patidvLpeiveavggr.ievlvDgGirrGsDvlkAlalGAdavllGR 301
                 l+++   v t + a+ ++eaG++++ v    G     R + g+ ++ i +  + vea++g  i+v++DgGir   D++kA+a GA av++G 
  CTQ29321.1 271 LQIIGGNVATGAGARALAEAGCSAVKVGIGPGsicttRIVTGVgVPQITAVSDAVEALEGTgIPVIADGGIRFSGDIAKAIAAGAAAVMVGS 362
                 55555668888999999999999999988877566666666542566888888899999966****************************96 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHHHHHHHHT-SBHHHHHC CS
      FMN_dh 315 vervleilraelertmallGvksvaeldr 343
                 ++++++  +  l+++m l+G+ +++ l+ 
  CTQ29321.1 427 LKEIIHQQMGGLRSCMGLTGCGTIDLLRT 455
                 567778888889***********998765 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   4.0     5e-06    0.0065      76     223 ..     222     364 ..     200     372 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5e-06
                   EEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEECEEEEETTTTEEEEEEHHHHHHHHHHTT-..SEEEEEET. CS
  His_biosynth  76 vqvGGGIrsledveelleagadkviigtaavknpelikelaekfgsqkivvaiDarrgykvaikgwreetgldavelakkleelga..geilltdi. 169
                     vG G  + e+v++l+ ag+d + i ++  ++  +++++ e   +      + +  g +va+  + +     + e    + ++g+  g+i  t i 
    CTQ29321.1 222 AAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAK---YPDLQIIGG-NVATGAGARA----LAEAGCSAVKVGIgpGSICTTRIv 310
                   5678888888888888888888888888888888887777775444...666777777.7777777777....333333444444311566666542 PP

                   TTTTTSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTCSEEEESHHH CS
  His_biosynth 170 drdGtlsGpdleltkelaeavkipviasGGvgsledlkelksegvdavivgsal 223
                     +G+ +   ++   e  e + ipvia GG++   d++++ ++g++av+vgs+l
    CTQ29321.1 311 TGVGVPQITAVSDAVEALEGTGIPVIADGGIRFSGDIAKAIAAGAAAVMVGSML 364
                   567777777776666666778899999999999999999999999999999887 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.9   2.5e+03      61      72 ..      19      30 ..      10      42 .. 0.77
   2 ?   -3.6   0.0       4.3   5.4e+03      97     131 ..      92     125 ..      72     129 .. 0.60
   3 ?   -2.1   0.2       1.5   1.9e+03     176     206 ..     220     250 ..     215     259 .. 0.77
   4 !   16.9   7.1   2.4e-06    0.0031     137     212 ..     284     369 ..     278     374 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.9
                CTSEEEEE-TT- CS
        ThiG 61 kevtllPntaGa 72
                 + t+lPnta  
  CTQ29321.1 19 AHSTVLPNTADL 30
                567999**9965 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.3
                 --BCETTTTEB-HHHHHHHHHHHH.HTT-EEEEEE- CS
        ThiG  97 EviadektLlPdvvetlkaaeiLv.keGFevlpYvs 131
                  v++d +t+lP +  tl+  + L  ++GF+  p v+
  CTQ29321.1  92 GVVTDPQTVLPTT--TLREVKELTeRNGFAGYPVVT 125
                 4777888888854..444444444157777766655 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.5
                 S-BEEES---SHHHHHHHHHTT-SEEEESHH CS
        ThiG 176 vPvivDAGigspsdaaqamelGadavllnta 206
                 v   v AG g+ + + + +  G+d +l++++
  CTQ29321.1 220 VGAAVGAGAGNEERVDALVAAGVDVLLIDSS 250
                 5566888888888888888889988888775 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 2.4e-06
                 HHHHHHTT-SEBE....E...BSSSTTS----S-HHHHHHHHHH-...SS-BEEES---SHHHHHHHHHTT-SEEEESHHHHTSSS CS
        ThiG 137 arrleevGcaavm....P...laapiGsglGllnkealkiiieea...kvPvivDAGigspsdaaqamelGadavllntavaeakd 212
                 ar+l e+Gc+av     P    ++ i +g G+ + +a++  +e +    +Pvi D Gi+ + d+a+a+  Ga av++ + +a +++
  CTQ29321.1 284 ARALAEAGCSAVKvgigPgsiCTTRIVTGVGVPQITAVSDAVEALegtGIPVIADGGIRFSGDIAKAIAAGAAAVMVGSMLAGTEE 369
                 899*******996222242223457999****99999998887764447******************************9998765 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       2.4   3.1e+03     206     238 ..     220     252 ..     213     264 .. 0.71
   2 !   15.8   6.5   4.6e-06    0.0059     244     304 ..     306     362 ..     272     365 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.4
                   EEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT- CS
  Glu_synthase 206 vsvKlvaeagvetiaagvakanadiilidGleG 238
                   v+  ++a+ag e     ++ a++d++lid ++G
    CTQ29321.1 220 VGAAVGAGAGNEERVDALVAAGVDVLLIDSSHG 252
                   555566666655544448889999999998877 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 4.6e-06
                   EHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SH CS
  Glu_synthase 244 pkssikhaGlPlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigt 304
                    + ++  +G+P ++a++ ++++l  +g    + +iadGg++ + d++ka+a GA av +g+
    CTQ29321.1 306 TTRIVTGVGVPQITAVSDAVEALEGTG----IPVIADGGIRFSGDIAKAIAAGAAAVMVGS 362
                   5567889****************9877....689************************997 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   4.0   3.4e-05     0.043      56     178 ..     233     366 ..     229     370 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.4e-05
                 HHHHHHTTT-SEEEEE--SS--T--HHHHHHHHHHH-...-EEEEE-SSHHHHHHHHHTT-SEE.........E-T..TTTSSTTS-.SS--HHHHHHH CS
        NanE  56 dideLaaagadiialDatdrerpvtieelikkikeky...qllmaDistleeglvakklGvdiv.........Gtt..lsGytkeeekaepDfalvkal 140
                  +d+L+aag+d++ +D+ + + +  ++  i++ + ky   q++  +++t   + +  ++G   v          tt  + G    +  a    + v+al
  CTQ29321.1 233 RVDALVAAGVDVLLIDSSHGHSEGVLQ-RIRETRAKYpdlQIIGGNVATGAGARALAEAGCSAVkvgigpgsiCTTriVTGVGVPQITAVS--DAVEAL 328
                 589999999999999998776654444.456666677777777777777555555555554443111111000333212333333333444..468999 PP

                 HHTT--EEEES---SHHHHHHHHTT--SEEEE-HHHH- CS
        NanE 141 seaglkviaeGrintPekakkaieiGvdavvvGsaitr 178
                   +g+ via+G i      +kai  G++av+vGs ++ 
  CTQ29321.1 329 EGTGIPVIADGGIRFSGDIAKAIAAGAAAVMVGSMLAG 366
                 99********************************9865 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.4   5.2e+02      93     121 ..     218     246 ..     205     252 .. 0.79
   2 !   14.8   3.2   1.1e-05     0.014      86     179 ..     261     362 ..     252     364 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.4
    TMP-TENI  93 lgpdliiGlSvhsleeaeeaealgadYig 121
                 l  ++ +G+ + ++e + ++ a+g+d + 
  CTQ29321.1 218 LRVGAAVGAGAGNEERVDALVAAGVDVLL 246
                 55678899999999999999999998775 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.1e-05
    TMP-TENI  86 vaearellgpdliiGlSvhsleeaeeaealgadYigvGpifpTdtKkda.eplgleglkelaeale......iPvvaiGGitle.nvaevleagadgva 176
                 ++e r+  ++  iiG  v + + a++++++g++ + vG    + + +   + +g+ +++++++a+e      iPv+a GGi+ + ++a++++aga+ v 
  CTQ29321.1 261 IRETRAKYPDLQIIGGNVATGAGARALAEAGCSAVKVGIGPGSICTTRIvTGVGVPQITAVSDAVEalegtgIPVIADGGIRFSgDIAKAIAAGAAAVM 359
                 67899999999*********************9988776655666666567777777777777777777*99**********7549**********999 PP

    TMP-TENI 177 vvs 179
                 v s
  CTQ29321.1 360 VGS 362
                 977 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0      0.02        25     111     163 ..      51     112 ..       5     115 .. 0.76
   2 ?    8.2   0.0    0.0023         3      74     122 ..     207     262 ..     146     273 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.02
                  SSSHH..........HHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHH CS
                  xxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 111 aadde..........kvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleel 163
                  ++++            +  ++ ++ ++e++ e +++ +++   +v+d  ++lp  + +e++el
   CTQ29321.1  51 TVTEArlaialaqegGIGFIH-KNMSIERQAEEVRRVKKHESGVVTDPQTVLPTTTLREVKEL 112
                  555555555555555566666.77899999999999999999999999999999999999987 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0023
                  C.......CCTEEEEEEECSSCHGHHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHT CS
                  x.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  74 a.......vpgiritvetngtlpdeeklerllelgvdrvslgleaaddekvlklmn 122
                  +          +r+   + ++  +ee +++l+ +gvd++ ++  ++++e vl++++
   CTQ29321.1 207 KpnackdeQGRLRVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIR 262
                  233333444555555555555555*************************9999994 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.6     0.034        44     233     274 ..     260     299 ..     255     314 .. 0.83
   2 ?   13.3   3.1   2.8e-05     0.036     242     276 ..     330     364 ..     309     371 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.034
                 HHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESH CS
      DHO_dh 233 virelykrlkkeipiIgvGGiesgeDalekieaGAslvqvyt 274
                  ire +++   +++iIg G + +g  a   +eaG s+v+v+ 
  CTQ29321.1 260 RIRETRAKYP-DLQIIG-GNVATGAGARALAEAGCSAVKVGI 299
                 5666666665.899**9.99*******************985 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.8e-05
                 TT.S-EEEESS--SHHHHHHHHHHTECEEEESHHH CS
      DHO_dh 242 kkeipiIgvGGiesgeDalekieaGAslvqvytal 276
                    ip+I+ GGi  + D    i aGA++v v++ l
  CTQ29321.1 330 GTGIPVIADGGIRFSGDIAKAIAAGAAAVMVGSML 364
                 345*****************************987 PP

>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.17   2.2e+02     150     209 ..      28      88 ..      12      95 .. 0.79
   2 ?    9.2   0.0   0.00039       0.5       8      53 ..     222     267 ..     216     286 .. 0.85
   3 ?   -3.0   0.4         2   2.6e+03     300     315 ..     346     361 ..     344     367 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.17
                 ESS-EEE-SS-BEE-TTS---S-SS-HHHHHHHHHHHHCT-SEEE..ETTE-SHHHHHHHHH CS
          PK 150 ventgvlgskkgvnlpgtkvdlpalsekDkadlrfgvkqgvdlia..asfvrkasDvkevre 209
                 +  +++l++   +n+p  +  +++++e     + ++ + g+ +i   +s  r+a++v++v++
  CTQ29321.1  28 ADLSTQLTKTIRLNIPMLSAAMDTVTEAR-LAIALAQEGGIGFIHknMSIERQAEEVRRVKK 88 
                 4556677778889999999999***9964.4577788889***9644799999999999876 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00039
                 EEESCCCTSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHH CS
          PK   8 ctlGPasesvekleklieaGlnvvrlnfshGsheehqerienvrea 53 
                 + +G  + + e++++l++aG++v+ ++ shG+ e   +ri + r+ 
  CTQ29321.1 222 AAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAK 267
                 5678888999************************999999888765 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2
                 HHHHHHHHT-SEEEES CS
          PK 300 DvanavlDGtDavmLs 315
                 D+a a+  G+ avm+ 
  CTQ29321.1 346 DIAKAIAAGAAAVMVG 361
                 999**********985 PP

>> G3P_antiterm  Glycerol-3-phosphate responsive antiterminator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.3   4.2e+03      88     118 ..      64      96 ..      52     118 .. 0.47
   2 ?   -3.1   0.0       3.5   4.4e+03     131     166 ..     261     296 ..     257     298 .. 0.76
   3 ?    9.9   0.4   0.00036      0.47     136     168 ..     329     361 ..     315     363 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.3
                   HTT--EEEEEE--SHHH..HHHHHHHHHHHT-S CS
  G3P_antiterm  88 klglltiqrlfliDssa..lekalkqiekskpd 118
                   + g+  i++   i ++a  ++++ k+ + +  d
    CTQ29321.1  64 EGGIGFIHKNMSIERQAeeVRRVKKHESGVVTD 96 
                   444444444444444431122333333333344 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.5
                   HCTSTTS...EEEEESS--SHHHHHHHCTT.SSEEE CS
  G3P_antiterm 131 ikeikkelkipiiaGGLietkedveealkaGaiavs 166
                   i+e++ +     i GG + t    +++ +aG +av 
    CTQ29321.1 261 IRETRAKYPDLQIIGGNVATGAGARALAEAGCSAVK 296
                   555566655556779999999999999999999986 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00036
                   TS...EEEEESS--SHHHHHHHCTT.SSEEEE- CS
  G3P_antiterm 136 kelkipiiaGGLietkedveealkaGaiavsts 168
                   + + ip+ia G i+ + d+ +a++aGa av+++
    CTQ29321.1 329 EGTGIPVIADGGIRFSGDIAKAIAAGAAAVMVG 361
                   4579**************************875 PP

>> Aldolase  KDPG and KHG aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.83   1.1e+03      24      78 ..      56     111 ..      32     119 .. 0.71
   2 ?    9.8   0.7   0.00037      0.47      26     111 ..     234     321 ..     230     333 .. 0.73
   3 ?   -0.7   0.1      0.64   8.2e+02     149     180 ..     333     365 ..     313     371 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.83
                 HHHHHHH.HTT--EEEEETTSTTHHHHHHHHHHH-TTSEEEEES--SHHHHHHHHH CS
    Aldolase  24 plaeaLv.agGlrvlevtlrteaaldairvlrkerpdllvgaGtvlnaeqlaeake 78 
                  la aL+ +gG+  +   +  e  ++ +r ++k+  +++    tvl +  l e+ke
  CTQ29321.1  56 RLAIALAqEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLPTTTLREVKE 111
                 34555551456777777777777777888788888888888888888888777765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00037
                 HHHHHHTT--EEEEET...TSTTHHHHHHHHHHH-TTSEEEEES--SHHHHHHHHHCT-SEEEESS--HHHHHHHHHTTS-EEEEESSH CS
    Aldolase  26 aeaLvagGlrvlevtl...rteaaldairvlrkerpdllvgaGtvlnaeqlaeakeaGaqfvvsPGltadllkaavdlkipllPGvstp 111
                 ++aLva G+ vl +      +e+ l+ ir  r++ pdl +  G v +   + + +eaG+   v  G+ +  + ++  ++   +P ++++
  CTQ29321.1 234 VDALVAAGVDVLLIDSshgHSEGVLQRIRETRAKYPDLQIIGGNVATGAGARALAEAGCSA-VKVGIGPGSICTTRIVTGVGVPQITAV 321
                 79**********99762225788889999999999************************85.455555544444444444444444444 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.64
                 -EEEEBSS--TT.THHHHHTSTTBS-EEESCCC CS
    Aldolase 149 vrfiPtGGispa.nvrdylalpsvlvvgGswlv 180
                 + +i  GGi  + ++ + +a+++ +v++Gs l 
  CTQ29321.1 333 IPVIADGGIRFSgDIAKAIAAGAAAVMVGSMLA 365
                 456777888865478889999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 3760.61
//
Query:       CTQ29322.1  [L=463]
Description: exonuclease VII, large subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-103  346.1   3.9   2.6e-103  345.8   3.9    1.1  1  Exonuc_VII_L     Exonuclease VII, large subunit
    6.9e-34  115.9   0.2    1.2e-32  111.9   0.0    2.4  2  tRNA_anti_2      OB-fold nucleic acid binding domain
      7e-09   35.6   0.0      2e-08   34.1   0.0    1.9  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
      0.022   15.0   0.3       0.26   11.5   0.0    2.5  2  bMG10            Bacterial Alpha-2-macroglobulin MG10 domain
      0.067   13.1   0.4        4.8    7.1   0.1    2.5  2  Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
       0.12   12.2   0.0       0.27   11.1   0.0    1.5  1  DUF1508          Domain of unknown function (DUF1508)
       0.17   11.5   0.1       0.86    9.3   0.1    2.0  2  DUF1987          Domain of unknown function (DUF1987)


Domain annotation for each model (and alignments):
>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.8   3.9    1e-106  2.6e-103       1     303 [.     126     440 ..     126     441 .. 0.98

  Alignments for each domain:
  == domain 1  score: 345.8 bits;  conditional E-value: 1e-106
  Exonuc_VII_L   1 lfdeerkkplpklpkrigvvtsptgaairDilrtlkrrgplveillfpalvQGeeaaaeiikalekanalkeaDvliiaRGGGSleDLwaFndeela 97 
                   lf++++k++lp+  + +gv+ts+tgaa++Dil++l+rr p + ++++p++vQG++a+ +i++a++ ana++e+Dvli++RGGGSleDLw+Fnde++a
    CTQ29322.1 126 LFEQKHKQALPSPAHCVGVITSKTGAALHDILHVLRRRDPGLPVIIYPTAVQGDDAPGQIVRAIALANARQECDVLIVGRGGGSLEDLWSFNDERVA 222
                   79*********************************************************************************************** PP

  Exonuc_VII_L  98 raiaaskiPvisavGHEtDttiaDfvAdlrapTPtaaAelvvpdkaeleeqleelerrlekaikrlleekkqrleklasrl..kspeellerkrqrl 192
                   rai+as+iP++savGHEtD+tiaDfvAdlrapTP+aaAe+v+++++el++ql++ ++rle a++  l ++++r+++l +rl  ++p+ +l+r++ +l
    CTQ29322.1 223 RAIFASQIPIVSAVGHETDVTIADFVADLRAPTPSAAAEIVSRNQQELLRQLQSGQQRLEMAMDYFLASRQRRFTQLFHRLqqQHPQLRLARQQTAL 319
                   *****************************************************************************99997459999********* PP

  Exonuc_VII_L 193 deleerleralkkqlkkkrerleelkerl.k....ekleekkerlkklkerle.....lleekkerleeleeklealsplkvLkrGyaivrkedgkv 279
                   ++l++r++ a+++qlk++++r +++ +rl +     +++++++r+++l+ rl+     +l+e++er+ ++ ++lea+spl++L+rGy++++ +dg+v
    CTQ29322.1 320 ERLRQRMRIAVESQLKRAEQRQKRTVQRLnHynpqPRIHRAQSRIQQLEYRLAeimrgRLSERRERFGNAVTHLEAVSPLATLARGYSVTSVSDGTV 416
                   *****************************55999999999999*****99999998888*********************************99*** PP

  Exonuc_VII_L 280 vtsakdlkkgdeleirladgevka 303
                   ++++k++k+gd l++rl+dg v++
    CTQ29322.1 417 LKQTKQVKTGDLLTTRLKDGWVES 440
                   ********************9986 PP

>> tRNA_anti_2  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   4.7e-36   1.2e-32       1      95 []      10     103 ..      10     103 .. 0.97
   2 ?    1.2   0.0      0.17   4.3e+02      12      32 ..     427     446 ..     415     454 .. 0.73

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 4.7e-36
  tRNA_anti_2   1 lsVseltraikelleaelkkavwvrGeisnlkrkasghvYftLkDekakisavifrsraaklkftledGmkVlvkgrlsvYeprGsyqlivedie 95 
                  ++Vs l++ ++ lle+e+ ++vw+ Geisn+++++sgh+YftLkD++a++++++fr+++++++f++++G++Vlv++++++YeprG+yq+ive+++
   CTQ29322.1  10 FTVSRLNQTVRLLLEREM-GQVWISGEISNFSQPSSGHWYFTLKDDNAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESMQ 103
                  79****************.66**********8788*********************************************************996 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.17
  tRNA_anti_2  12 elleaelkkavwvrGeisnlk 32 
                  +ll ++lk+  wv+ e+ +++
   CTQ29322.1 427 DLLTTRLKD-GWVESEVKQIA 446
                  577889966.9*******995 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   7.9e-12     2e-08       1      75 [.      30     104 ..      30     105 .. 0.97

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 7.9e-12
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEEC.TTSSEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrr.pggelelkveeiel 75 
                      V++ G++++ s + ++++ +++l+D+ +++++ +fr++ +++  + + G+ v v+  ++ + p+g+++++ve++++
       CTQ29322.1  30 VWISGEISNFS-QPSSGHWYFTLKDDNAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYePRGDYQIIVESMQP 104
                      89********9.*************************************************98889******9975 PP

>> bMG10  Bacterial Alpha-2-macroglobulin MG10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0001      0.26      22      65 ..      73     118 ..      53     135 .. 0.77
   2 ?    0.3   0.1       0.3   7.7e+02      13      34 ..     413     434 ..     401     450 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
       bMG10  22 klkvGdkvrvrltvttprdl..eyvaledplPAGlepvnpslgtes 65 
                 + + G++v+vr ++t  +++  +++++e++ PAG  +++++ ++ +
  CTQ29322.1  73 RPQHGQQVLVRANITLYEPRgdYQIIVESMQPAGEGLLQQKYEQLK 118
                 6899**********9666665599**********999888776554 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.3
       bMG10  13 gkevsksdaklkvGdkvrvrlt 34 
                 + +v k+++++k+Gd++++rl+
  CTQ29322.1 413 DGTVLKQTKQVKTGDLLTTRLK 434
                 3333344448********9996 PP

>> Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.019        47      57     121 ..     153     222 ..     110     245 .. 0.72
   2 ?    7.1   0.1    0.0019       4.8      48      97 ..     287     353 ..     252     355 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.019
  Glyco_tran_WecB  57 lekaaerlrekypglriagthdgy.keeeeeaiieainas....kpdlllvglGapkqEkwiarlkeelk 121
                      l  + + lr++ pgl +  +      +++  +i++ai+ +    + d+l+vg G    E + + + e++ 
       CTQ29322.1 153 LHDILHVLRRRDPGLPVIIYPTAVqGDDAPGQIVRAIALAnarqECDVLIVGRGGGSLEDLWSFNDERVA 222
                      55566667777777777766555433344445555554442223889*******9999988888877653 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0019
  Glyco_tran_WecB  48 fllGgkpevlekaaerlrekypglriagthdg............yk.....eeeeeaiieainaskp 97 
                      ++l +++    ++ +rl++++p+lr+a  +              ++     e+ +++ ++++n+++p
       CTQ29322.1 287 YFLASRQRRFTQLFHRLQQQHPQLRLARQQTAlerlrqrmriavESqlkraEQRQKRTVQRLNHYNP 353
                      99************************98776655554444433300344445666666666666665 PP

>> DUF1508  Domain of unknown function (DUF1508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.27       2      17 ..      43      58 ..      43      58 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                TTTEEEEEEE-TTS-E CS
     DUF1508  2 knGefrFrLkaaNgev 17
                ++G+++F+Lk++N +v
  CTQ29322.1 43 SSGHWYFTLKDDNAQV 58
                68***********997 PP

>> DUF1987  Domain of unknown function (DUF1987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.81   2.1e+03      90     116 ..      46      72 ..      41      75 .. 0.83
   2 ?    9.3   0.1   0.00034      0.86      42      81 ..     268     307 ..     260     313 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.81
     DUF1987  90 nWyydeededmlelgeefkedfealpf 116
                 +Wy+  +d++++     f+++ + ++f
  CTQ29322.1  46 HWYFTLKDDNAQVRCAMFRNSNRRVTF 72 
                 7*******9999888888887777666 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00034
     DUF1987  42 eayleeekkkkievnlkLsYfntssskalldllelLeeaa 81 
                 ++ l++ ++ + +++++++Yf  s ++ + +l++ L++ +
  CTQ29322.1 268 QELLRQLQSGQQRLEMAMDYFLASRQRRFTQLFHRLQQQH 307
                 677888888999*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1275  (0.0711138); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3502.96
//
Query:       CTQ29323.1  [L=72]
Description: hypothetical protein CH1034_270034 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-28   97.3   5.2    4.1e-28   97.2   5.2    1.0  1  zinc-ribbons_6  zinc-ribbons
      0.003   17.6   1.0     0.0046   17.0   0.2    1.8  2  Nop10p          Nucleolar RNA-binding protein, Nop10p family
     0.0059   16.6   9.3       0.08   13.0   9.3    2.3  1  DZR             Double zinc ribbon
  ------ inclusion threshold ------
      0.017   14.9   5.0          1    9.2   5.0    2.3  1  zf-RING_4       RING/Ubox like zinc-binding domain
      0.018   15.1   7.9      0.031   14.3   2.1    2.4  2  DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domai
       0.09   13.0   8.2        1.3    9.2   1.3    2.2  2  Auto_anti-p27   Sjogren's syndrome/scleroderma autoantigen 1 
       0.12   12.3  10.3        3.2    7.7   1.2    3.6  3  zinc_ribbon_4   zinc-ribbon domain
       0.14   12.3   4.0       0.69   10.0   0.3    2.1  2  DUF2614         Zinc-ribbon containing domain
       0.25   10.8   7.9        3.1    7.3   0.7    3.1  3  zf-ribbon_3     zinc-ribbon domain
       0.29    9.0   3.0       0.27    9.1   3.0    1.0  1  PolC_DP2        DNA polymerase II large subunit DP2
       0.31   11.2   7.3        4.5    7.4   7.4    2.5  1  DiS_P_DiS       Bacterial Peptidase A24 N-terminal domain
       0.44   10.4   8.7        0.6   10.0   0.3    2.6  3  Rad50_zn_hook   Rad50 zinc hook motif
       0.51   10.9   8.7        1.1    9.9   8.8    1.6  1  zf-CHY          CHY zinc finger
       0.92   10.1   8.3        7.5    7.2   0.4    2.7  2  Trm112p         Trm112p-like protein
        1.3    9.2   6.8        4.3    7.5   0.3    3.1  3  DUF2256         Uncharacterized protein conserved in bacteria
        1.5    8.9   8.3        2.1    8.4   7.5    1.8  1  HypA            Hydrogenase/urease nickel incorporation, meta
        1.9    8.6   4.6       0.31   11.2   0.4    1.8  2  DUF2396         Protein of unknown function (DUF2396)
          2    8.6  14.5        1.2    9.4   5.1    3.4  3  Zn-ribbon_8     Zinc ribbon domain
        2.1    8.1   9.7        5.5    6.7   1.1    3.0  3  zf-P11          P-11 zinc finger
        2.4    8.0   7.9        8.7    6.2   1.0    2.5  2  YacG            DNA gyrase inhibitor YacG


Domain annotation for each model (and alignments):
>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   5.2   4.5e-31   4.1e-28       2      66 ..       4      68 ..       3      69 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 4.5e-31
                    --SSS-S--EE-SSEEE-TTT--EEEEEEE-SSS-S---EEEETTEEEE--TTTT----TTSSEE CS
  zinc-ribbons_6  2 kCpeCqqelekrgeqyhCeaCqedlkkealCpeCeqelevlkaCgavdyfCnkcneLiSkkrvef 66
                     Cp C+++l+ +g+++hC +C++ ++ ea CpeC+q+levlkaCgavdyfC+++++LiSkkrvef
      CTQ29323.1  4 DCPLCHAPLDVKGSSAHCAQCERVFTLEARCPECHQPLEVLKACGAVDYFCQHGHGLISKKRVEF 68
                    6**************************************************************98 PP

>> Nop10p  Nucleolar RNA-binding protein, Nop10p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       2.2     2e+03      20      27 ..       5      12 ..       2      23 .. 0.69
   2 !   17.0   0.2   5.1e-06    0.0046       7      29 ..      20      43 ..      14      48 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.2
                -TTT-SB- CS
      Nop10p 20 cpecggpt 27
                cp c +p+
  CTQ29323.1  5 CPLCHAPL 12
                88888865 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 5.1e-06
                E-TTT-.-EESSSB-TTT-SB-B- CS
      Nop10p  7 kcgkcr.vYTLkkvcpecggptks 29
                +c +c+ v TL+ +cpec +p+++
  CTQ29323.1 20 HCAQCErVFTLEARCPECHQPLEV 43
                6888866************99875 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   9.3   8.9e-05      0.08      15      48 ..       5      37 ..       3      64 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.9e-05
         DZR 15 CseCgtklkavaaedrCpsCgekvdpearfCpeC 48
                C+ C ++l+   ++ +C +C++  ++ear CpeC
  CTQ29323.1  5 CPLCHAPLDVKGSSAHCAQCERVFTLEAR-CPEC 37
                66666666655556666666666666543.5555 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.0    0.0011         1       1      46 [.       5      40 ..       5      42 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0011
   zf-RING_4  1 cplCdeeldetdkdlkpCeCgyqiClfCyhrileeeegrCPaCree 46
                cplC ++ld ++++ +        C  C +r+ +  e+rCP+C ++
  CTQ29323.1  5 CPLCHAPLDVKGSSAH--------CAQC-ERVFT-LEARCPECHQP 40
                7888888888888765........7778.77774.7999***9986 PP

>> DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.4     0.056        50       2       9 ..       5      12 ..       4      17 .. 0.91
   2 ?   14.3   2.1   3.5e-05     0.031       1      21 [.      33      55 ..      33      59 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.056
  DNA_ligase_ZBD  2 CPvCGsav 9 
                    CP C++++
      CTQ29323.1  5 CPLCHAPL 12
                    *****997 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 3.5e-05
  DNA_ligase_ZBD  1 hCPvCGsavv.Ree.geaiyRCt 21
                    +CP+C+++++  +  g ++y+C 
      CTQ29323.1 33 RCPECHQPLEvLKAcGAVDYFCQ 55
                    5*********534447777***6 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.3    0.0015       1.3      18      40 .]       5      25 ..       1      25 [. 0.88
   2 ?    8.0   0.8    0.0036       3.2      14      36 ..      30      54 ..      29      56 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0015
  Auto_anti-p27 18 CpvCgvPLmrdrkggkvyCvaCd 40
                   Cp C +PL    kg    C+ C+
     CTQ29323.1  5 CPLCHAPLDV--KGSSAHCAQCE 25
                   **********..67899*****5 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0036
  Auto_anti-p27 14 LaetCpvCgvPLmrdr..kggkvyC 36
                   L++ Cp+C  PL   +  + ++++C
     CTQ29323.1 30 LEARCPECHQPLEVLKacGAVDYFC 54
                   6778********8888887788888 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.2    0.0036       3.2      21      36 .]      14      29 ..       1      29 [. 0.67
   2 ?    5.2   0.8     0.022        19       4      10 ..      33      39 ..      31      43 .. 0.66
   3 ?   -2.9   0.0       7.5   6.7e+03      30      33 ..      46      49 ..      45      50 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0036
  zinc_ribbon_4 21 akgvkvrCskCghvFr 36
                    kg+++ C+ C  vF+
     CTQ29323.1 14 VKGSSAHCAQCERVFT 29
                   4678999999999996 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.022
  zinc_ribbon_4  4 tCpsCka 10
                   +Cp+C+ 
     CTQ29323.1 33 RCPECHQ 39
                   6777764 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 7.5
  zinc_ribbon_4 30 kCgh 33
                   +Cg+
     CTQ29323.1 46 ACGA 49
                   5665 PP

>> DUF2614  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00077      0.69      68      96 ..       3      31 ..       1      33 [. 0.92
   2 ?    5.6   0.2     0.018        17      67      85 ..      31      52 ..      28      67 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00077
     DUF2614 68 vvcpeceketkvlGrvdlcmhcdepltld 96
                + cp c+ +  v G    c++c++ +tl+
  CTQ29323.1  3 LDCPLCHAPLDVKGSSAHCAQCERVFTLE 31
                68***********************9997 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.018
     DUF2614 67 qvvcpeceketkvl...Grvdl 85
                + +cpec+++  vl   G vd 
  CTQ29323.1 31 EARCPECHQPLEVLkacGAVDY 52
                678****998877633366663 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.7    0.0034       3.1       5      23 ..       5      25 ..       1      28 [. 0.88
   2 ?    6.9   0.1    0.0047       4.2       2      12 ..      31      41 ..      30      44 .. 0.79
   3 ?   -0.1   0.2      0.74   6.6e+02       8      11 ..      47      50 ..      45      56 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0034
  zf-ribbon_3  5 CPnCGa.p.lssddnvCpyCG 23
                 CP C a + ++ +  +C+ C 
   CTQ29323.1  5 CPLCHApLdVKGSSAHCAQCE 25
                 ******889***********6 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0047
  zf-ribbon_3  2 tvrCPnCGapl 12
                 + rCP+C +pl
   CTQ29323.1 31 EARCPECHQPL 41
                 679****7765 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.74
  zf-ribbon_3  8 CGap 11
                 CGa+
   CTQ29323.1 47 CGAV 50
                 6664 PP

>> PolC_DP2  DNA polymerase II large subunit DP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.0    0.0003      0.27     614     651 ..      14      52 ..       2      68 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0003
    PolC_DP2 614 veiarrkCkkCgke.tlearCeeCgekteeklvCkkcee 651
                 v+ ++ +C +C++  tlearC+eC +  e   +C  ++ 
  CTQ29323.1  14 VKGSSAHCAQCERVfTLEARCPECHQPLEVLKACGAVDY 52 
                 444566788887543777788888887777777766654 PP

>> DiS_P_DiS  Bacterial Peptidase A24 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.4    0.0051       4.5      22      63 ..      26      67 ..       5      72 .] 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0051
   DiS_P_DiS 22 slvkprSrCpkCghklkwleliPvlSylllrgrCraCkakis 63
                 +++ ++rCp+C+++l++l+    + y++++g     k++++
  CTQ29323.1 26 RVFTLEARCPECHQPLEVLKACGAVDYFCQHGHGLISKKRVE 67
                5677789************************99888777776 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00067       0.6      21      30 ..       4      13 ..       2      19 .. 0.86
   2 ?   -0.5   0.0       1.3   1.1e+03      25      32 ..      24      31 ..      14      33 .. 0.77
   3 ?    5.1   1.0     0.023        20      19      30 ..      31      42 ..      29      46 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00067
                   E-TTT--EE- CS
  Rad50_zn_hook 21 cCPlCgReld 30
                   +CPlC+ +ld
     CTQ29323.1  4 DCPLCHAPLD 13
                   6********9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.3
                   T--EE-HH CS
  Rad50_zn_hook 25 CgReldee 32
                   C+R ++ e
     CTQ29323.1 24 CERVFTLE 31
                   99999865 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.023
                   SEE-TTT--EE- CS
  Rad50_zn_hook 19 kgcCPlCgReld 30
                   +++CP C+++l+
     CTQ29323.1 31 EARCPECHQPLE 42
                   459*******96 PP

>> zf-CHY  CHY zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   8.8    0.0012       1.1      21      71 ..       4      56 ..       2      60 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0012
      zf-CHY 21 aCreCHeeledhelerlevkevlcllCeteqekavlCkkCkk........efaeyfCpi 71
                +C  CH+     +l+ +  +   c +Ce++ + +  C +C++         + +yfC++
  CTQ29323.1  4 DCPLCHA-----PLDVKGSS-AHCAQCERVFTLEARCPECHQplevlkacGAVDYFCQH 56
                7*****9.....66666555.56999999999999999999988887776667788876 PP

>> Trm112p  Trm112p-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   2.1      0.02        18       8      48 ..       3      13 ..       3      31 .. 0.68
   2 ?    7.2   0.4    0.0083       7.5       9      21 ..      33      43 ..      32      67 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.02
                -B-TTTHHC--HHHHHHHHHTT---S-SS----SCHHTTEE CS
     Trm112p  8 LaCpackgpLdwealvevaalglnelpkekpedyellleld 48
                L Cp+c+ pL                              d
  CTQ29323.1  3 LDCPLCHAPL------------------------------D 13
                78********..............................2 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0083
                B-TTTHHC--HHH CS
     Trm112p  9 aCpackgpLdwea 21
                 Cp c++pL  e+
  CTQ29323.1 33 RCPECHQPL--EV 43
                6********..33 PP

>> DUF2256  Uncharacterized protein conserved in bacteria (DUF2256)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.43   3.8e+02       9      17 ..       4      12 ..       2      17 .. 0.84
   2 ?    7.5   0.3    0.0048       4.3       9      18 ..      20      29 ..      16      33 .. 0.86
   3 ?    3.4   0.1     0.096        86       9      18 ..      33      42 ..      30      47 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.43
     DUF2256  9 iCavCgrpf 17
                 C+ C+ p+
  CTQ29323.1  4 DCPLCHAPL 12
                5****9886 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0048
     DUF2256  9 iCavCgrpft 18
                 Ca+C+r ft
  CTQ29323.1 20 HCAQCERVFT 29
                6********8 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.096
     DUF2256  9 iCavCgrpft 18
                 C+ C++p++
  CTQ29323.1 33 RCPECHQPLE 42
                5******987 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   7.5    0.0024       2.1      69      95 ..      17      40 ..       4      53 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0024
                -EEEETTTS-EEECHHHHHS-TTTSSS CS
        HypA 69 vkvrCreCgkefeleekalrCpkCgsa 95
                 +++C +C++ f+le   +rCp+C++ 
  CTQ29323.1 17 SSAHCAQCERVFTLE---ARCPECHQP 40
                5789*********98...47****985 PP

>> DUF2396  Protein of unknown function (DUF2396)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       2.3   2.1e+03       6      14 ..       2      10 ..       1      16 [. 0.80
   2 ?   11.2   0.4   0.00034      0.31       2      31 ..      27      59 ..      26      69 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.3
     DUF2396  6 eikcPhcrq 14
                e+ cP c+ 
  CTQ29323.1  2 ELDCPLCHA 10
                789****86 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00034
     DUF2396  2 ifGaeikcPhcrqtipaltltdt..ylcer.hG 31
                +f  e +cP+c+q ++ l    +  y+c++ hG
  CTQ29323.1 27 VFTLEARCPECHQPLEVLKACGAvdYFCQHgHG 59
                7999************99987644499975355 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.065        59      28      36 ..       4      12 ..       1      15 [. 0.75
   2 ?    9.4   5.1    0.0013       1.2       7      37 ..      20      42 ..      18      45 .. 0.82
   3 ?   -0.4   0.3       1.4   1.3e+03       5      10 ..      51      56 ..      45      65 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.065
  Zn-ribbon_8 28 aCPeCgsev 36
                 +CP C++++
   CTQ29323.1  4 DCPLCHAPL 12
                 5****9854 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0013
  Zn-ribbon_8  7 rCeeCghefevlqsisdaplta.CPeCgsevr 37
                 +C +C ++f+         l+a CPeC+++++
   CTQ29323.1 20 HCAQCERVFT---------LEArCPECHQPLE 42
                 6999999999.........4444*****9775 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.4
  Zn-ribbon_8  5 eYrCee 10
                 +Y C+ 
   CTQ29323.1 51 DYFCQH 56
                 455654 PP

>> zf-P11  P-11 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2     0.016        14      38      46 ..       5      13 ..       2      15 .. 0.86
   2 ?    6.7   1.1    0.0062       5.5      24      45 ..      21      41 ..      17      45 .. 0.81
   3 ?    0.8   0.1      0.44   3.9e+02      21      31 ..      51      61 ..      43      66 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.016
                ETTTSSB-- CS
      zf-P11 38 CpiCkkPLP 46
                Cp+C+ PL 
  CTQ29323.1  5 CPLCHAPLD 13
                *******96 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0062
                EHHHHHHHHHHSSBETTTSSB- CS
      zf-P11 24 ClrClqllLsvserCpiCkkPL 45
                C +C +++     rCp C++PL
  CTQ29323.1 21 CAQCERVF-TLEARCPECHQPL 41
                88888765.5678********9 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.44
                SEEEHHHHHHH CS
      zf-P11 21 HYLClrClqll 31
                 Y C + + l+
  CTQ29323.1 51 DYFCQHGHGLI 61
                59999999876 PP

>> YacG  DNA gyrase inhibitor YacG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.9     0.014        13       2      18 ..       4      20 ..       3      27 .. 0.82
   2 ?    6.2   1.0    0.0097       8.7       2      14 ..      33      45 ..      32      56 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.014
        YacG  2 kCPtCkkevewseenpf 18
                +CP C+++  ++ ++++
  CTQ29323.1  4 DCPLCHAPLDVKGSSAH 20
                7*******999987765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0097
        YacG  2 kCPtCkkevewse 14
                +CP C+++ e+ +
  CTQ29323.1 33 RCPECHQPLEVLK 45
                8******998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 533.23
//
Query:       CTQ29324.1  [L=359]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-07   31.1   0.0    6.1e-07   30.3   0.0    1.4  1  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol
    0.00057   20.6   0.0    0.00086   20.0   0.0    1.3  1  G6PD_N        Glucose-6-phosphate dehydrogenase, NAD binding 


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   6.9e-11   6.1e-07       2     110 ..       2     106 ..       1     114 [. 0.81

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 6.9e-11
                   EEEEETTSHH.HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-.EEEEESSS- CS
  GFO_IDH_MocA   2 rvaiiGaGki.gskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagk.hvllEKPla 96 
                   ++++iG+G +  + +l++l++  +  +    +d d +ra       g++ +s+l++lla+p  d ++++t + +h  + ++al+ g+  +++EKP++
    CTQ29324.1   2 QIGFIGLGAVvETAYLPALRRLGDVIDRCQGYDLDCSRA-----LPGIQRCSSLSALLAEP-LDTLFITTSSLQHLPVLERALASGIsRIVVEKPIV 92 
                   678888888867777766666655444444445444444.....4799***********88.*********************************** PP

                   SSHHHHHHHHHHHH CS
  GFO_IDH_MocA  97 ttveeakelvelae 110
                   +++e+a +l +l++
    CTQ29324.1  93 ANLEQAARLRALLA 106
                   ********988875 PP

>> G6PD_N  Glucose-6-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   9.6e-08   0.00086     128     175 ..      76     126 ..      47     128 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 9.6e-08
      G6PD_N 128 e...eewkrvvvEKPfGkdlesarelneelkkvfkeeqiyrIDhYLGketv 175
                 +   ++ +r+vvEKP+  +le a++l + l+   +  ++  +Dh++++ + 
  CTQ29324.1  76 RalaSGISRIVVEKPIVANLEQAARLRALLAPPEQAARVLALDHWMARGVA 126
                 2344799***************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       222  (0.0123822); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2783.59
//
Query:       CTQ29325.1  [L=492]
Description: GTPase involved in ribosome synthesis and maintenance [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-56  186.9   0.1      3e-28   98.2   0.0    2.4  2  MMR_HSR1         50S ribosome-binding GTPase
      3e-32  111.3   0.0    1.2e-16   60.7   0.0    2.2  2  FeoB_N           Ferrous iron transport protein B
    2.3e-27   95.1   0.0    1.2e-26   92.9   0.0    2.1  2  KH_dom-like      KH-domain-like of EngA bacterial GTPase enzy
      6e-21   74.9   0.4    1.3e-10   41.2   0.1    5.0  2  GTP_EFTU         Elongation factor Tu GTP binding domain
    1.4e-11   44.7   0.0      0.021   14.9   0.0    4.5  4  Dynamin_N        Dynamin family
    6.7e-09   35.4   0.1    5.3e-05   22.6   0.1    2.4  2  AIG1             AIG1 family
    2.4e-08   34.1   0.0      0.037   13.9   0.0    3.9  4  RsgA_GTPase      RsgA GTPase
    1.6e-06   27.9   0.0     0.0043   16.7   0.0    3.0  2  Ras              Ras family
    3.5e-06   27.2   0.0       0.24   11.6   0.0    3.8  2  Roc              Ras of Complex, Roc, domain of DAPkinase
    8.1e-05   22.4   0.0        0.2   11.4   0.0    3.1  2  AAA_24           AAA domain
    0.00013   22.5   0.0       0.54   10.8   0.0    2.5  2  ABC_tran         ABC transporter
    0.00015   22.0   0.5        1.5    9.1   0.0    3.5  3  AAA_22           AAA domain
    0.00035   20.3   0.0        1.9    8.3   0.0    3.6  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
    0.00058   19.5   4.4       0.39   10.3   0.3    3.9  4  cobW             CobW/HypB/UreG, nucleotide-binding domain
    0.00075   18.9   0.0       0.89    8.9   0.0    2.5  2  TniB             Bacterial TniB protein
     0.0012   18.7   0.0       0.16   11.7   0.0    3.5  4  ATP_bind_1       Conserved hypothetical ATP binding protein
     0.0017   17.6   0.0        1.2    8.2   0.0    2.5  2  NB-ARC           NB-ARC domain
     0.0017   17.4   0.2        6.8    5.6   0.0    3.5  3  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0027   18.1   0.0        3.8    7.9   0.0    2.6  2  RNA_helicase     RNA helicase
     0.0037   17.2   0.3          5    7.0   0.0    3.0  3  NTPase_1         NTPase
     0.0055   16.1   0.0       0.24   10.8   0.0    2.5  2  SRPRB            Signal recognition particle receptor beta su
     0.0062   16.8   0.1        1.4    9.3   0.0    2.5  2  Nuc_deoxyri_tr2  Nucleoside 2-deoxyribosyltransferase like
  ------ inclusion threshold ------
      0.012   15.2   0.1       0.89    9.2   0.0    2.7  3  SRP54            SRP54-type protein, GTPase domain
      0.018   15.6   0.0        7.2    7.2   0.0    2.7  2  AAA_18           AAA domain
      0.022   14.9   0.0        4.5    7.4   0.0    2.4  2  AAA_33           AAA domain
      0.024   15.0   0.2         25    5.2   0.0    3.5  2  AAA_16           AAA ATPase domain
      0.037   13.6   0.3         21    4.6   0.0    3.7  3  AAA_25           AAA domain
      0.039   14.0   0.0        4.5    7.3   0.0    2.4  2  MMR_HSR1_Xtn     C-terminal region of MMR_HSR1 domain
      0.052   13.3   0.0         14    5.5   0.0    2.5  2  AAA_29           P-loop containing region of AAA domain
      0.096   11.9   0.0         13    4.9   0.0    2.7  3  Septin           Septin
      0.099   12.5   0.0        1.9    8.4   0.0    2.4  2  Ploopntkinase3   P-loop Nucleotide Kinase3
       0.26   11.1   2.6        1.8    8.4   0.2    3.1  2  NOG1             Nucleolar GTP-binding protein 1 (NOG1)


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0   5.3e-31     3e-28       2     114 .]       5     119 ..       4     119 .. 0.91
   2 !   86.5   0.2   2.2e-27   1.2e-24       2     114 .]     207     324 ..     206     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 5.3e-31
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHH...HHHHHHHHHHCTSEEEEEEETTTTCSHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseek...glgkaflaleeadlillvvdaseeklkpldee 96 
                 va+vGrpNvGKStL+n+lt++  a v+d+pg Trd ++gr +++g+e++ +Dt G i+g +e+    + ++++la+eead++l++vda+ ++l p d  
  CTQ29325.1   5 VALVGRPNVGKSTLFNRLTRTrDALVADFPGLTRDRKYGRAEVEGREFICIDTGG-IDGTEEGVetrMAEQSLLAIEEADVVLFMVDAR-AGLMPADIA 101
                 89******************967********************************.8633333334589999999************99.7799***** PP

                 HHHHHHHTTSEEEEEEES CS
    MMR_HSR1  97 leelleeakkplilvlnk 114
                 +++ l++++kp++lv+nk
  CTQ29325.1 102 IAKHLRSREKPTFLVANK 119
                 *****************8 PP

  == domain 2  score: 86.5 bits;  conditional E-value: 2.2e-27
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGC.....SSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGl.....iegaseekglgkaflaleeadlillvvdaseeklkpld 94 
                  aivGrpNvGKStL n+++ge ++ v d+pgtTrd +++ ++ +++e++l+Dt+G+     i +  e+ ++ k+++a+e+a+++llv+da+ e+++++d
  CTQ29325.1 207 LAIVGRPNVGKSTLTNRILGEdRVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVrkrgkITDVVEKFSVIKTLQAIEDANVVLLVIDAR-EGISDQD 304
                 79******************989*******************999**********643333223444559*******************98.88***** PP

                 HHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  95 eeleelleeakkplilvlnk 114
                  +l  ++ ++++ l++v+nk
  CTQ29325.1 305 LSLLGFILNSGRSLVIVVNK 324
                 ******999*********98 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   2.1e-19   1.2e-16       3     154 ..       5     156 ..       3     158 .. 0.83
   2 !   48.7   0.1     1e-15   5.7e-13       2     154 ..     206     368 ..     205     370 .. 0.86

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 2.1e-19
                 EEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGG..HHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatn..lernLyLt 98 
                 valvG pnvGk+tlfn+lt ++   v+ +pG t ++k g+ +++g+e+  +D  Gi   ++  e     +++l+ ee+dvv+ +vda    +  ++ + 
  CTQ29325.1   5 VALVGRPNVGKSTLFNRLTRTRdALVADFPGLTRDRKYGRAEVEGREFICIDTGGIDGTEEGVETRMAEQSLLAIEEADVVLFMVDARAglMPADIAIA 103
                 89******************983569******************************88776655555555666689**********986447899**** PP

                 HHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH CS
      FeoB_N  99 lqllelgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieellk 154
                   l   ++p+ l+ n++d ++ ++   d  +L   Lg ++ +++a++++g+ +ll+
  CTQ29325.1 104 KHLRSREKPTFLVANKTDGIDVDQAMADFWSLG--LG-DIYPIAASHGRGVTSLLE 156
                 ******************998888877776654..33.677777777777777766 PP

  == domain 2  score: 48.7 bits;  conditional E-value: 1e-15
                 EEEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE----SS...SSSSSHHHHHHHHHHHCTSSSEEEEEEEGGG..HHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGiYs...lsayseeekvardflleeepdvvvnvvdatn..lern 94 
                 ++a+vG pnvGk+tl n++ g +   v   pG+t +     ++ +++e+ ++D  G+ +   ++++ e  +v +++ + e+++vv+ v+da +   +++
  CTQ29325.1 206 KLAIVGRPNVGKSTLTNRILGEDrVVVYDMPGTTRDSIYIPMQRDEREYVLIDTAGVRKrgkITDVVEKFSVIKTLQAIEDANVVLLVIDAREgiSDQD 304
                 789****************9987256679**************99************7611157777777888888889************97435899 PP

                 HHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT....S-EEEEBTTTTBTHHHHHH CS
      FeoB_N  95 LyLtlqllelgvpvvlalnmideaekkgieidlkkLsekLg....vpvvktsakkkegieellk 154
                 L L+  +l+ g ++v+++n++d ++++  e  +++L+ +Lg      v  +sa +++g+ +l +
  CTQ29325.1 305 LSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLDYRLGfidfARVHFISALHGSGVGNLFE 368
                 ****************************99999*******943333677788888888888776 PP

>> KH_dom-like  KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       4.4   2.5e+03      42      70 ..     318     346 ..     317     349 .. 0.85
   2 !   92.9   0.0   2.1e-29   1.2e-26       1      80 []     380     460 ..     380     460 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 4.4
                  EEEEECSCCCS-HHHHHHHHHHHHHHCT- CS
  KH_dom-like  42 fvlfvndpelvkesykryLenqlreafgf 70 
                  +v++vn+ + +++ +k+ ++ +l  ++gf
   CTQ29325.1 318 LVIVVNKWDGLSQEVKEQVKETLDYRLGF 346
                  68999**9999999999999998888887 PP

  == domain 2  score: 92.9 bits;  conditional E-value: 2.1e-29
                  ---HHHHHHHHHHHHCCS--S.ETTCC-EEEEEEEEETTTTEEEEEECSCCCS-HHHHHHHHHHHHHHCT-TTS--EEEEE CS
  KH_dom-like   1 RistseLnrvleeavekhppp.vkgkrlkiyyatqvgtrpptfvlfvndpelvkesykryLenqlreafgfegtPirlkfR 80 
                  R+st+ L+r+++ a e h+pp v+g+r+k++ya+ +g +pp +v+++n+ + +++sykryL n +r++++  gtPir++f+
   CTQ29325.1 380 RVSTAMLTRIMNMAAEDHQPPlVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGTPIRIQFK 460
                  9********************888*******************************************************98 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.2e-06    0.0007      90     136 ..      78     124 ..       1     161 [. 0.81
   2 !   41.2   0.1   2.3e-13   1.3e-10       6     190 ..     207     372 ..     204     376 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.2e-06
                 HHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTH CS
    GTP_EFTU  90 glrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlk 136
                 +++ +D+++++vda+ G +p    +++++++++ p++++ NK D ++
  CTQ29325.1  78 AIEEADVVLFMVDARAGLMPADIAIAKHLRSREKPTFLVANKTDGID 124
                 47889***************************************884 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 2.3e-13
                 EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSS..........GGGH.HHHHHHHHT CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGH..........vdFs.kevirglrv 93 
                 ++i+g  + GK+TLt r+l +                 D+       g T +s  i ++   +++++ liDt G           ++Fs  ++ ++++ 
  CTQ29325.1 207 LAIVGRPNVGKSTLTNRILGE-----------------DRVVVYDMPGTTRDSIYIPMQ--RDEREYVLIDTAGVrkrgkitdvvEKFSvIKTLQAIED 286
                 678888888888888888822.................222333345888888888888..99999999999996222222222245642467788999 PP

                 -SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU  94 lDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealve 190
                 +++++lv+da+eG+  q   +l  +l+ g  +++++NK D l +e+ke+v+e  +       +l  +      +  v f+Sal+g gv +l+e + e
  CTQ29325.1 287 ANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLDY------RLGFID-----FARVHFISALHGSGVGNLFESVRE 372
                 ******************************************99998877766522......243333.....5679**************998866 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.014       7.6       1      20 [.       5      24 ..       5      40 .. 0.89
   2 !   10.1   0.0    0.0011      0.64     106     167 ..      55     119 ..      30     120 .. 0.84
   3 !   14.9   0.0   3.7e-05     0.021       1      45 [.     207     252 ..     207     253 .. 0.80
   4 !    9.0   0.0    0.0024       1.3      99     166 ..     250     323 ..     242     325 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
                EEEEEBTTTTHHHHHHHHHT CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlg 20
                +a+vG  + GKS++ n L++
  CTQ29325.1  5 VALVGRPNVGKSTLFNRLTR 24
                799**************986 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0011
                 EE---B-SSSGTTS....HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 106 vDlPGldsvnkrdq....elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                 +D+ G+d ++++ +    e    +i++ad++l++++a   l+ ++   +a+++++++k t+ v +k
  CTQ29325.1  55 IDTGGIDGTEEGVEtrmaEQSLLAIEEADVVLFMVDARAGLMPADI-AIAKHLRSREKPTFLVANK 119
                 89999999888877754444455679****************7776.69999999*******9998 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 3.7e-05
                 EEEEEBTTTTHHHHHHHHHTS--S---SS.S---S-EEEEECCT-- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpn.ptTrrplelqlgeeee 45 
                 +a+vG  + GKS++ n +lged  ++     tTr  + + ++++e+
  CTQ29325.1 207 LAIVGRPNVGKSTLTNRILGEDRVVVYDMpGTTRDSIYIPMQRDER 252
                 589******************9777666615777777777777765 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0024
                 TS-SEEEEE---B-SSSGTTS.......HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE CS
   Dynamin_N  99 lvkgltlvDlPGldsvnkrdq.......elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvlt 166
                 ++ +++l+D+ G+ ++ k            + ++i++a+++l+v +a   +s+++ +     + + g++ ++v++
  CTQ29325.1 250 DEREYVLIDTAGVRKRGKITDvvekfsvIKTLQAIEDANVVLLVIDAREGISDQDLSL-LGFILNSGRSLVIVVN 323
                 677899*********77766679999544455788*****************777554.4455555555444444 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00057      0.32       4      94 ..       6      92 ..       4     108 .. 0.77
   2 !   22.6   0.1   9.5e-08   5.3e-05       3     105 ..     207     309 ..     205     322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00057
                EEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETT CS
        AIG1  4 vlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslg 94
                 lvG+  +GkS+  N + +++         ++t+  +  +++++g++   iDT g+  +++  ++      +  ll+ e  +++l+ ++++
  CTQ29325.1  6 ALVGRPNVGKSTLFNRLTRTRDALVA-DFPGLTRDRKYGRAEVEGREFICIDTGGIDGTEEGVETRMA---EQSLLAIEEADVVLFMVDAR 92
                69**************9887654443.4699************************9777665554444...33467777789999887776 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 9.5e-08
                 EEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHH.HHHHHHHHCTT-ESEEEEEEETT.B-SHH CS
        AIG1   3 ivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkisk.eivrclllseegihalllvlslg.rftee 99 
                 + +vG+  +GkS+  N ilg++         + t+ +     ++d+++ + iDT g+    + +d ++k ++++ l+  e+  +++llv++++  ++++
  CTQ29325.1 207 LAIVGRPNVGKSTLTNRILGEDRVVVY-DMPGTTRDSIYIPMQRDEREYVLIDTAGVRKRGKITDVVEKfSVIKTLQAIED-ANVVLLVIDAReGISDQ 303
                 679******************997776.67899999999999********************9999988467776655555.9**********899999 PP

                 HHHHHH CS
        AIG1 100 dekalk 105
                 d ++l 
  CTQ29325.1 304 DLSLLG 309
                 987765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00053       0.3     101     129 ..       4      32 ..       3      60 .. 0.76
   2 ?   -2.5   0.0       7.2     4e+03      32      75 ..      69     109 ..      63     135 .. 0.53
   3 !   13.9   0.0   6.6e-05     0.037     102     163 ..     207     264 ..     151     267 .. 0.80
   4 ?    4.3   0.0     0.061        34      38      72 ..     307     340 ..     274     375 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00053
                  EEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktge 129
                  +++lvG   vGKStL n+l+ + ++ +++
   CTQ29325.1   4 VVALVGRPNVGKSTLFNRLTRTRDALVAD 32 
                  5789***************9987766654 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.2
                  HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHT CS
  RsgA_GTPase  32 lnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeeleal 75 
                  +++ ++ L+++ee+++ + +v  ++ l+  +    +++++l++ 
   CTQ29325.1  69 TRMAEQSLLAIEEADVVLFMVDARAGLMPADI---AIAKHLRSR 109
                  55566666666666666655555555554444...333333333 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 6.6e-05
                  EEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETT...TEEEESS-SSSS CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelae...gglliDtPGfre 163
                   ++vG   vGKStL n++l+e+++ + ++         TT+ +  +++++   + +liDt G+r+
   CTQ29325.1 207 LAIVGRPNVGKSTLTNRILGEDRVVVYDMPG-------TTRDSIYIPMQRderEYVLIDTAGVRK 264
                  5789*****************9888887766.......899998888887555678899999886 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.061
                  HHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHH CS
  RsgA_GTPase  38 fLvlaeekgiepvivlnKiDlleeeeeleelkeel 72 
                  +L ++ ++g ++viv+nK D l++e   e++ke+l
   CTQ29325.1 307 LLGFILNSGRSLVIVVNKWDGLSQEV-KEQVKETL 340
                  566777888899********999998.44444433 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0049       2.8       2     115 ..       5     121 ..       4     131 .. 0.57
   2 !   16.7   0.0   7.7e-06    0.0043       1     157 [.     206     371 ..     206     375 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0049
                 EEEEESTTSSHHHHHHHHHHSSCSSSC.TTTSSEEEEEEEEEETTEEEEEEEEEETTSGGG.....HHHHHHHH.TTESEEEEEEETTBHHHHHTHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeey.esTigvdfytkeievdgkevkleiwDTAGqeef.....kslrelyy.rdaegillvyditsresfenvkkw 93 
                 + lvG  +vGK++l +r ++ +       + +  d +  + ev+g+e  +   DT G +       ++++e+++    e+ ++++ ++ r+ +  ++  
  CTQ29325.1   5 VALVGRPNVGKSTLFNRLTRTRDALVAdFPGLTRDRKYGRAEVEGRE--FICIDTGGIDGTeegveTRMAEQSLlAIEEADVVLFMVDARAGLMPADIA 101
                 579**************987543322202444456666666666554..34556665433200011233333330334455677777777777777755 PP

                 HHHHHHHSTTTSEEEEEEETTT CS
         Ras  94 veeikrvaeenvpivLvGnKvD 115
                 + +  r  e+  p  Lv+nK+D
  CTQ29325.1 102 IAKHLRSREK--PTFLVANKTD 121
                 5444444443..6777777777 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 7.7e-06
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTS..........GGGHHHHH.HHHTTESEEEEEEETTBHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGq..........eefkslre.lyyrdaegillvyditsresfe 88 
                 Kl +vG  +vGK++l++r   ++    y++       +  i ++  e +  + DTAG           e+f+ +++ + ++da+++llv d  +  s +
  CTQ29325.1 206 KLAIVGRPNVGKSTLTNRILGEDRVVVYDMPG-TTRDSIYIPMQRDEREYVLIDTAGVrkrgkitdvvEKFSVIKTlQAIEDANVVLLVIDAREGISDQ 303
                 899****************9998888887653.5566666777777778889*****533334444447888887624578899999997777777666 PP

                 THHHHHHHHHHHSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHT.SEEEE...EBTTTTCTHHHHHHHHH CS
         Ras  89 nvkkwveeikrvaeenvpivLvGnKvDleekravsteegeelakelg.lkfle...tSAktnenveeafeell 157
                 +++ ++  i +  +   ++v+v nK D  + ++v+++  e+l  +lg + f     +SA +  +v ++fe++ 
  CTQ29325.1 304 DLS-LLGFILNSGR---SLVIVVNKWDGLS-QEVKEQVKETLDYRLGfIDFARvhfISALHGSGVGNLFESVR 371
                 654.5555555555...699999****885.899999999999999988887633469999999999999875 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00068      0.38       2      22 ..       5      25 ..       4     122 .. 0.78
   2 !   11.6   0.0   0.00043      0.24       1      24 [.     206     229 ..     206     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00068
                EEEESSTTSSHHHHHHCHCT- CS
         Roc  2 vvlvGdsgvGKtsllkrfved 22
                v lvG  +vGK++l++r+++ 
  CTQ29325.1  5 VALVGRPNVGKSTLFNRLTRT 25
                679**************9954 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00043
                 EEEEESSTTSSHHHHHHCHCT-CC CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkf 24 
                 K+ +vG  +vGK++l +r++ ++ 
  CTQ29325.1 206 KLAIVGRPNVGKSTLTNRILGEDR 229
                 899***************997655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0042       2.3       4      31 ..       4      33 ..       1      90 [. 0.85
   2 !   11.4   0.0   0.00035       0.2       3      36 ..     205     240 ..     203     350 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0042
      AAA_24  4 kiliyGpsgiGKTtlakel..gpkplfidt 31
                 ++++G + +GK+tl ++l  + ++l+ d+
  CTQ29325.1  4 VVALVGRPNVGKSTLFNRLtrTRDALVADF 33
                689****************88888888866 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00035
      AAA_24   3 lkiliyGpsgiGKTtlakel..gpkplfidtekGlk 36 
                 +k++i+G + +GK+tl +++  ++++++ d+ + ++
  CTQ29325.1 205 IKLAIVGRPNVGKSTLTNRIlgEDRVVVYDMPGTTR 240
                 799*****************9889999988766544 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0028       1.6      13      34 ..       4      25 ..       3      38 .. 0.91
   2 !   10.8   0.0   0.00096      0.54      13      37 ..     206     230 ..     204     356 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0028
                EEEEEESTTSSHHHHHHHHTTS CS
                xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagl 34
                +va+vG+   GKStL++ l++ 
  CTQ29325.1  4 VVALVGRPNVGKSTLFNRLTRT 25
                69***************99986 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00096
                 EEEEEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkp 37 
                 k+aivG+   GKStL + ++g+ + 
  CTQ29325.1 206 KLAIVGRPNVGKSTLTNRILGEDRV 230
                 689*****************99875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0028       1.5       8      30 ..       5      27 ..       3      57 .. 0.85
   2 !    9.0   0.1    0.0028       1.6       8      57 ..     207     244 ..     206     324 .. 0.72
   3 ?   -1.9   0.0       6.9   3.8e+03      40      82 ..     350     390 ..     322     402 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0028
      AAA_22  8 lvvtGesGtGKTtllrrlleqld 30
                ++++G + +GK+tl +rl+++ d
  CTQ29325.1  5 VALVGRPNVGKSTLFNRLTRTRD 27
                689****************9975 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0028
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdll 57 
                 l+++G + +GK+tl +r+l ++           +vv +++p+ t +++++
  CTQ29325.1 207 LAIVGRPNVGKSTLTNRILGED-----------RVVVYDMPGTT-RDSIY 244
                 689***************9974...........77777777766.44444 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 6.9
      AAA_22  40 pevvfvtlpsstsskdllrellralglelkaerlsseelleal 82 
                 ++v f+ + ++++  +l++ + +a+++ + +   s+  l + +
  CTQ29325.1 350 ARVHFISALHGSGVGNLFESVREAYDSATRR--VSTAMLTRIM 390
                 4566777777778888888888888876666..4444333444 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0      0.01       5.7       5     138 ..       6     155 ..       3     159 .. 0.71
   2 !    8.3   0.0    0.0033       1.9       4     141 ..     207     370 ..     205     372 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.01
   PduV-EutP   5 lliGkvgsGKttLtqalkg.............eelkYkktqaiefsdeviDtPG.....eylenrklysalivtsaeadvialvqdateeesvfppgfa 85 
                  l+G+ ++GK tL ++l+              ++ kY +      +  +iDt G     e +e r   ++l ++  eadv+ +++da +       ++a
  CTQ29325.1   6 ALVGRPNVGKSTLFNRLTRtrdalvadfpgltRDRKYGRAEVEGREFICIDTGGidgteEGVETRMAEQSLLAI-EEADVVLFMVDARAGLMPADIAIA 103
                 57788888888888888776777777777766566666654322222235554444343889999888888765.699999999999987666655555 PP

   PduV-EutP  86 svf...nkeviGiitkidlaedeenieaveelLksaGaekifevsavekegieell 138
                 + +   +k++  +  k+d      +++++   + s G   i+ + a +  g+ +ll
  CTQ29325.1 104 KHLrsrEKPTFLVANKTDGI----DVDQAMADFWSLGLGDIYPIAASHGRGVTSLL 155
                 55522268999999999988....88888899999999999999999999998886 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0033
   PduV-EutP   4 illiGkvgsGKttLtqalkg.............eelkYkktqaiefsdeviDtPG........eylenrklysalivtsaeadvialvqdateees... 78 
                 + ++G+ ++GK tLt+++ g             ++ +Y   q  e +  +iDt G        + +e+ ++ ++l+++  +a+v+ lv da e  s   
  CTQ29325.1 207 LAIVGRPNVGKSTLTNRILGedrvvvydmpgttRDSIYIPMQRDEREYVLIDTAGvrkrgkitDVVEKFSVIKTLQAI-EDANVVLLVIDAREGISdqd 304
                 668999999999999999887777777777777677788888888888889998744443333344555555555544.59999999999987544110 PP

   PduV-EutP  79 vfppgfasvfnkeviGiitkidlaedeenieaveelL....ksaGaekifevsavekegieellkyl 141
                 +   gf     + ++ ++ k d   ++e  e+v+e+L         +++  +sa++ +g+ +l++ +
  CTQ29325.1 305 LSLLGFILNSGRSLVIVVNKWDGL-SQEVKEQVKETLdyrlGFIDFARVHFISALHGSGVGNLFESV 370
                 444567777789999999999987.333344555554100055667889999999999999998866 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.079        44       1      25 [.       3      27 ..       3      60 .. 0.83
   2 ?    4.2   0.1     0.052        29      84     158 ..      51     128 ..      36     134 .. 0.75
   3 ?   -0.5   0.0       1.4   7.9e+02       4      22 ..     208     227 ..     206     248 .. 0.84
   4 !   10.3   0.3    0.0007      0.39      82     165 ..     251     339 ..     239     343 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.079
                EEEEEEESTTCCHHHHHHHHHCT-- CS
        cobW  1 pvtvltGflGsGKTtLlnhllenra 25
                pv+ l+G +  GK+tL n+l++ r+
  CTQ29325.1  3 PVVALVGRPNVGKSTLFNRLTRTRD 27
                689999**************98765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.052
                 SEEEEEECTTTTHHHHHTT...SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC.. CS
        cobW  84 dviliEttGlaePapvaft...eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeeal 158
                 + i i t+G+    + + t   e++l +  ++d+v+++vDa++     +    k  +  ++  +lv nKtD +d ++ 
  CTQ29325.1  51 EFICIDTGGIDGTEEGVETrmaEQSLLAIEEADVVLFMVDARAGLMPADIAIAKHLRSREKPTFLVANKTDGIDVDQA 128
                 5688888887666665333345899999999**********88765555555666667788999*******9998754 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.4
                 EEEESTTCCHHHHHHHHH.C CS
        cobW   4 vltGflGsGKTtLlnhll.e 22 
                  ++G +  GK+tL n++l e
  CTQ29325.1 208 AIVGRPNVGKSTLTNRILgE 227
                 57888899********9943 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.0007
                 T-SEEEEEECTTTTHHHH..HTT....SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHH CS
        cobW  82 rldviliEttGlaePapv..aft....eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeeallekleer 165
                 + +++li t G+ +   +  +++     ++l++   +++v+ v+Da++  ++++ +   +      + ++v+nK+D l++e + e+++e+
  CTQ29325.1 251 EREYVLIDTAGVRKRGKItdVVEkfsvIKTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVK-EQVKET 339
                 57899999999887777756333455677788888899999*****9988777777788888888999***********9954.677765 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0058       3.3      36      59 ..       3      26 ..       1      32 [. 0.86
   2 !    8.9   0.0    0.0016      0.89      37     126 ..     206     295 ..     197     301 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0058
        TniB 36 pnlllvGdsnnGKtmivekFarlh 59
                p + lvG++n+GK++++++ +r++
  CTQ29325.1  3 PVVALVGRPNVGKSTLFNRLTRTR 26
                7789**************988765 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0016
        TniB  37 nlllvGdsnnGKtmivekFarlhp.pekdedaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleq.qvlrllrelkvrvLiiD 126
                 +l +vG++n+GK+++ ++   +++    d   ++++ +++ +     e  l +   + ++++ k ++ v+k+   ++l+ +++ +v +L+iD
  CTQ29325.1 206 KLAIVGRPNVGKSTLTNRILGEDRvVVYDMPGTTRDSIYIPMQRDEREYVLIDT--AGVRKRGKITDVVEKFSViKTLQAIEDANVVLLVID 295
                 689***************996655155788888889999888887777766665..567777777777776654256777777777777777 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.57   3.2e+02       2      20 ..       8      26 ..       7      32 .. 0.85
   2 ?   -1.9   0.0       4.3   2.4e+03     152     176 ..     106     130 ..      77     172 .. 0.68
   3 ?    0.4   0.0      0.85   4.8e+02       1      16 [.     209     224 ..     209     227 .. 0.89
   4 !   11.7   0.0   0.00029      0.16      88     212 ..     249     378 ..     230     396 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.57
  ATP_bind_1  2 vGpaGsGKttfvgalseil 20
                vG + +GK+t+ ++l+ ++
  CTQ29325.1  8 VGRPNVGKSTLFNRLTRTR 26
                79999********998776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.3
  ATP_bind_1 152 mlrlelPhvvvlnkfDllkekleke 176
                 + + e P+  v nk+D+++ ++ ++
  CTQ29325.1 106 LRSREKPTFLVANKTDGIDVDQAMA 130
                 4556778888999999988654444 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.85
  ATP_bind_1   1 vvGpaGsGKttfvgal 16 
                 +vG + +GK+t+++++
  CTQ29325.1 209 IVGRPNVGKSTLTNRI 224
                 799*********9875 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 0.00029
  ATP_bind_1  88 keeddyllfDtPGQielfthseslak..iveeLes.efalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkeklekeleffed. 182
                 + e++y+l+Dt G  +  ++ ++  k  ++++L+  e a vv+ ++D++   +     ++ ls l  +l+ +   v+v+nk D+l+++ +++++   d 
  CTQ29325.1 249 RDEREYVLIDTAGVRKRGKITDVVEKfsVIKTLQAiEDANVVLLVIDAREGIS-----DQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLDy 342
                 33679********88766666655441179****9988888999999887555.....344666788999****************9955555544430 PP

  ATP_bind_1 183 ...vealslllekee.......ekykklaeaiaelleefa 212
                    + ++ ++    +       + + +l+e+++e+ +  +
  CTQ29325.1 343 rlgFIDFARV----HfisalhgSGVGNLFESVREAYDSAT 378
                 0002222222....02222444566666666666666555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0022       1.2      22      53 ..       4      35 ..       2      38 .. 0.88
   2 !    6.7   0.0    0.0066       3.7      22      43 ..     206     227 ..     198     235 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0022
                EEEEEESTTSSHHHHHHHHCCSHCCCCCCBTE CS
      NB-ARC 22 vvalvGmgGvGKttlakqilnksdevegrFds 53
                vvalvG++ vGK+tl++   +  d +   F++
  CTQ29325.1  4 VVALVGRPNVGKSTLFNRLTRTRDALVADFPG 35
                79****************99998888888875 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0066
                 EEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnk 43 
                  +a+vG++ vGK+tl + il +
  CTQ29325.1 206 KLAIVGRPNVGKSTLTNRILGE 227
                 589**************99876 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.012       6.8      31      51 ..       4      24 ..       2      29 .. 0.90
   2 ?    3.6   0.0      0.05        28      32      49 ..     207     224 ..     203     229 .. 0.87
   3 ?    3.9   0.0     0.038        22     171     233 ..     319     378 ..     254     395 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.012
                EEEEEE-TTSSHHHHHHHHHH CS
        MeaB 31 vvGltGvPGaGkstlvealgl 51
                vv l G P +Gkstl ++l+ 
  CTQ29325.1  4 VVALVGRPNVGKSTLFNRLTR 24
                7899*************9985 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.05
                 EEEEE-TTSSHHHHHHHH CS
        MeaB  32 vGltGvPGaGkstlveal 49 
                 + + G P +Gkstl++++
  CTQ29325.1 207 LAIVGRPNVGKSTLTNRI 224
                 6799**********9987 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.038
                 EEEEE---...HHHHHHHHHHHHHHHHHCSTTBTTB--EEEEEBCCCTBSHHHHHHHHHHHHHHHH CS
        MeaB 171 iivvnkaD...kkeaekaarelraaleleeekekeWrpkvlktsavegeGidelvdaieehrevlk 233
                 +ivvnk D   ++  e+++++l + l   +       ++v  +sa++g G+ +l++ ++e  + ++
  CTQ29325.1 319 VIVVNKWDglsQEVKEQVKETLDYRLGFID------FARVHFISALHGSGVGNLFESVREAYDSAT 378
                 789999996533333445555555555554......5789999***************99877665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0      0.01       5.6       2      20 ..       6      24 ..       5      39 .. 0.90
   2 !    7.9   0.0    0.0068       3.8       2      19 ..     208     225 ..     207     255 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.01
  RNA_helicase  2 wlyGpsgeGKStlakeLak 20
                   l+G++++GKStl ++L++
    CTQ29325.1  6 ALVGRPNVGKSTLFNRLTR 24
                  689************9986 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0068
  RNA_helicase   2 wlyGpsgeGKStlakeLa 19 
                    ++G++++GKStl++++ 
    CTQ29325.1 208 AIVGRPNVGKSTLTNRIL 225
                   589************954 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0098       5.5       2      21 ..       5      24 ..       4      37 .. 0.88
   2 !    7.0   0.0    0.0089         5       2      21 ..     207     226 ..     206     241 .. 0.89
   3 ?   -1.7   0.0       4.2   2.4e+03     120     136 ..     310     326 ..     262     344 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0098
                EEEE--TTSSHHHHHHHHHH CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvle 21
                v++ G+p vGK+Tl++++++
  CTQ29325.1  5 VALVGRPNVGKSTLFNRLTR 24
                7899***********99876 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0089
                 EEEE--TTSSHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvle 21 
                 ++i G+p vGK+Tl +++l 
  CTQ29325.1 207 LAIVGRPNVGKSTLTNRILG 226
                 7899************9975 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 4.2
                 HHHTTTSEEEEE--SS- CS
    NTPase_1 120 evLksekpvlavihrrk 136
                  +L+s++ +++v+ + +
  CTQ29325.1 310 FILNSGRSLVIVVNKWD 326
                 45666666666666653 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00042      0.24       4      85 ..       3      91 ..       1     120 [. 0.68
   2 ?    2.9   0.0      0.12        66       7      79 ..     208     281 ..     205     356 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00042
                -EEEEE-STTSSHHHHHHHHHHS..S---B---SS-EEETTG...GGTT-SEEEETT....-GCCSHHHHHH.HHHHGGEEEEEEEEET CS
       SRPRB  4 pavllvGlsdsGKTslftrLttd..svkktvtSqessaalkvksekgskltliDfPG....heklrqkllek.lkaksslkglvfvvDS 85
                p v lvG  + GK +lf+rLt    +       +     +   + +g ++  iD  G    +e + +++ e+ l+a +++  ++f+vD+
  CTQ29325.1  3 PVVALVGRPNVGKSTLFNRLTRTrdALVADFPGLTRDRKYGRAEVEGREFICIDTGGidgtEEGVETRMAEQsLLAIEEADVVLFMVDA 91
                67899***************975223333333333333333367788888888888722222345555555413344457777888886 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.12
                 EEE-STTSSHHHHHHHHHHS.S---B---S..S-EEETTG......GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEE CS
       SRPRB   7 llvGlsdsGKTslftrLttd.svkktvtSq..essaalkv...ksekgskltliDfPGheklrqklleklkaksslkgl 79 
                  +vG  + GK +l +r++ +  v    +      s    +    ++++ +  liD  G  k r k+++ + + s +k+l
  CTQ29325.1 208 AIVGRPNVGKSTLTNRILGEdRVVVYDMPGttRDS----IyipMQRDEREYVLIDTAGVRK-RGKITDVVEKFSVIKTL 281
                 599***********998866333222222211222....1233577888899999988655.77777666555556555 PP

>> Nuc_deoxyri_tr2  Nucleoside 2-deoxyribosyltransferase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.054        30      60      82 ..      71      93 ..      60     120 .. 0.68
   2 !    9.3   0.0    0.0024       1.4      63     106 ..     279     323 ..     265     325 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.054
                     HHHHHHHHHHH-SEEEEEE-TT- CS
  Nuc_deoxyri_tr2 60 qvewelealekAdvvvfvfdged 82
                       e+ l a+e+Advv+f++d + 
       CTQ29325.1 71 MAEQSLLAIEEADVVLFMVDARA 93
                     567778899***********933 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0024
                      HHHHHHHH-SEEEEEE-TT--.-HHHHHHHHHHTTSS-EEEEE-T CS
  Nuc_deoxyri_tr2  63 welealekAdvvvfvfdgeds.atrslvElglaaakgkkvvlvpk 106
                        l+a+e+A+vv+ v+d ++  +   l  lg++ ++g+ +v+v++
       CTQ29325.1 279 KTLQAIEDANVVLLVIDAREGiSDQDLSLLGFILNSGRSLVIVVN 323
                      6799**************55466677899*********9888865 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.8   2.1e+03       3      23 ..       4      24 ..       3      28 .. 0.87
   2 ?    2.6   0.0      0.16        90      78     128 ..      44      96 ..      34     124 .. 0.71
   3 ?    9.2   0.0    0.0016      0.89      80     126 ..     248     299 ..     236     311 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.8
                EEEEEESTTSSHHHHHHHHHH CS
       SRP54  3 villvGlqGaGKTttlaKLaa 23
                v++lvG   +GK t   +L +
  CTQ29325.1  4 VVALVGRPNVGKSTLFNRLTR 24
                7899**********9999976 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.16
                 HHHHTTSSEEEEEE--SSTTHHHHHHHHHHHHHHH..SSSEEEEEEETTBHTH CS
       SRP54  78 kakeekidvvlvDTaGrlqndkelmeelkkikkvv..kpdevllvldattgqe 128
                 +a+ e+ +++ +DT G   +++ + + +++ +  +  ++d vl+ +da +g  
  CTQ29325.1  44 RAEVEGREFICIDTGGIDGTEEGVETRMAEQSLLAieEADVVLFMVDARAGLM 96 
                 567788899*********9999999988776544444899999999*999864 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0016
                 HHTTSSEEEEEE--SSTTHH.....HHHHHHHHHHHHHSSSEEEEEEETTBH CS
       SRP54  80 keekidvvlvDTaGrlqndk.....elmeelkkikkvvkpdevllvldattg 126
                 ++++ ++vl+DTaG  +  k     e ++ +k+++ + +++ vllv+da  g
  CTQ29325.1 248 QRDEREYVLIDTAGVRKRGKitdvvEKFSVIKTLQAIEDANVVLLVIDAREG 299
                 5567799******955543211111555556666666699999*****9877 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.013       7.2       1      21 [.       5      25 ..       5      55 .. 0.86
   2 ?    5.6   0.0      0.04        22       3      18 ..     209     224 ..     207     258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.013
      AAA_18  1 IlltGtpGvGKttlakeLskr 21
                ++l G p vGK+tl ++L + 
  CTQ29325.1  5 VALVGRPNVGKSTLFNRLTRT 25
                6899***********999665 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.04
      AAA_18   3 ltGtpGvGKttlakeL 18 
                 + G p vGK+tl++++
  CTQ29325.1 209 IVGRPNVGKSTLTNRI 224
                 89**********9876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.008       4.5       1      26 [.       4      29 ..       4      52 .. 0.81
   2 ?    5.0   0.0     0.045        25       4      29 ..     209     234 ..     207     277 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.008
      AAA_33  1 lvllvGlpGsGKstlaerllkklgav 26
                +v lvG p +GKstl  rl + ++a 
  CTQ29325.1  4 VVALVGRPNVGKSTLFNRLTRTRDAL 29
                799****************9877654 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.045
      AAA_33   4 lvGlpGsGKstlaerllkklgavlls 29 
                 +vG p +GKstl  r+l +  +v+ +
  CTQ29325.1 209 IVGRPNVGKSTLTNRILGEDRVVVYD 234
                 7999************9998877766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.045        25      26      46 ..       4      24 ..       2      54 .. 0.78
   2 ?    4.9   0.1     0.055        31      28      63 ..     208     242 ..     204     322 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.045
      AAA_16 26 lvllsGesGvGKsslvrellr 46
                +v l+G + vGKs+l ++l r
  CTQ29325.1  4 VVALVGRPNVGKSTLFNRLTR 24
                789*************99986 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.055
      AAA_16  28 llsGesGvGKsslvrellralekdggif..lrgkcdql 63 
                  ++G + vGKs+l +++l    +d++++  + g+++++
  CTQ29325.1 208 AIVGRPNVGKSTLTNRIL---GEDRVVVydMPGTTRDS 242
                 689999999999999888...45555555666666666 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.037        21      35      51 ..       4      20 ..       2     116 .. 0.84
   2 ?    2.4   0.0      0.18     1e+02      37      50 ..     208     221 ..     199     225 .. 0.90
   3 ?    1.8   0.1      0.28   1.6e+02     132     151 ..     276     297 ..     232     305 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.037
      AAA_25 35 lallaGapgtGKttlal 51
                +++l+G+p +GK+tl  
  CTQ29325.1  4 VVALVGRPNVGKSTLFN 20
                689***********965 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.18
      AAA_25  37 llaGapgtGKttla 50 
                 +++G+p +GK+tl+
  CTQ29325.1 208 AIVGRPNVGKSTLT 221
                 689*********98 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.28
      AAA_25 132 aleaaieeveg..vrlvviDpl 151
                  ++++++++e+  v+l+viD  
  CTQ29325.1 276 SVIKTLQAIEDanVVLLVIDAR 297
                 4678888888877*******86 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.086        48      56      99 ..     111     157 ..     101     159 .. 0.79
   2 ?    7.3   0.0    0.0081       4.5      59     100 ..     319     370 ..     312     375 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.086
  MMR_HSR1_Xtn  56 ipclyvlNKiDlisleel.delare..pnsvviSaekelnldeLkek 99 
                   +p+++v NK+D i+ ++   ++ +    ++ +i+a+++ ++ +L+e+
    CTQ29325.1 111 KPTFLVANKTDGIDVDQAmADFWSLglGDIYPIAASHGRGVTSLLEQ 157
                   58899*******99876414444434469999999999999999886 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0081
  MMR_HSR1_Xtn  59 lyvlNKiDlisleeldelare..........pnsvviSaekelnldeLkeki 100
                   ++v+NK D +s+e  ++++++           ++ +iSa ++ ++ +L e +
    CTQ29325.1 319 VIVVNKWDGLSQEVKEQVKETldyrlgfidfARVHFISALHGSGVGNLFESV 370
                   79*****************977888898887788899999999998888776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.036        20      25      39 ..       5      19 ..       3      24 .. 0.88
   2 ?    5.5   0.0     0.025        14      15      38 ..     201     220 ..     195     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.036
      AAA_29 25 tlltGpsGsGKSTll 39
                + l+G+  +GKSTl+
  CTQ29325.1  5 VALVGRPNVGKSTLF 19
                5799*********97 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.025
      AAA_29  15 htieidlkgatlltGpsGsGKSTl 38 
                 ++++i+      ++G+  +GKSTl
  CTQ29325.1 201 QDLPIK----LAIVGRPNVGKSTL 220
                 444554....789**********9 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.049        28       8      30 ..       6      28 ..       4      59 .. 0.83
   2 ?    4.9   0.0     0.024        13       4      32 ..     204     232 ..     201     276 .. 0.75
   3 ?   -3.2   0.0       7.3   4.1e+03     145     166 ..     319     340 ..     309     352 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.049
                EEEEBTTSSCCCCCCTTSSSS-- CS
      Septin  8 mvvGesglGkttlintlfetdli 30
                 +vG+  +Gk+tl+n l +t++ 
  CTQ29325.1  6 ALVGRPNVGKSTLFNRLTRTRDA 28
                589**************998765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.024
                 EEEEEEEEBTTSSCCCCCCTTSSSS---- CS
      Septin   4 eftlmvvGesglGkttlintlfetdliee 32 
                  + l +vG+  +Gk+tl n ++ +d +  
  CTQ29325.1 204 PIKLAIVGRPNVGKSTLTNRILGEDRVVV 232
                 67899**************9998876554 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 7.3
                 EEEESSGGGS-HHHHHHHHHHH CS
      Septin 145 iPviaKaDtltkeElkefKkki 166
                 + v+ K D l +e  +++K+++
  CTQ29325.1 319 VIVVNKWDGLSQEVKEQVKETL 340
                 5566666666666555666554 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0034       1.9       6      29 ..       5      28 ..       2      49 .. 0.88
   2 ?    1.2   0.0      0.55   3.1e+02       8      22 ..     209     223 ..     205     241 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0034
  Ploopntkinase3  6 iylvGqPGaGkstlmaeltkgfdr 29
                    + lvG P  Gkstl   lt++ d 
      CTQ29325.1  5 VALVGRPNVGKSTLFNRLTRTRDA 28
                    679****************98765 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.55
  Ploopntkinase3   8 lvGqPGaGkstlmae 22 
                     +vG P  Gkstl   
      CTQ29325.1 209 IVGRPNVGKSTLTNR 223
                     8**********9765 PP

>> NOG1  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2    0.0032       1.8       5      58 .]      74     121 ..      71     121 .. 0.82
   2 ?    1.1   0.2      0.62   3.5e+02      16      58 .]     289     326 ..     278     326 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0032
        NOG1   5 qAiaALkhladavlFllDpseecgysleeQlsLleeikelfankpvivvlnKiD 58 
                 q+++A+++ ad+vlF++D+       +   +++ ++++++  +kp + v+nK+D
  CTQ29325.1  74 QSLLAIEE-ADVVLFMVDARAG--L-MPADIAIAKHLRSR--EKPTFLVANKTD 121
                 77888877.79*******9854..3.44559999999999..699999***998 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.62
        NOG1  16 avlFllDpseecgysleeQlsLleeikelfankpvivvlnKiD 58 
                 +vl ++D+ e      ++ lsLl  i +    + +++v+nK D
  CTQ29325.1 289 VVLLVIDAREGIS---DQDLSLLGFILNS--GRSLVIVVNKWD 326
                 5556666555321...2335555555554..357889999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 3329.34
//
Query:       CTQ29326.1  [L=392]
Description: protein assembly complex, lipoprotein component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-61  206.2  10.8    1.3e-54  185.3   8.3    2.4  2  PQQ_2            PQQ-like domain
    2.9e-39  132.5  22.3    1.9e-06   28.2   0.0    8.5  8  PQQ_3            PQQ-like domain
    4.8e-38  127.3  10.4    1.5e-07   31.0   0.3    7.2  7  PQQ              PQQ enzyme repeat
  ------ inclusion threshold ------
       0.11   11.8   0.5          6    6.3   0.1    2.5  2  LVIVD            LVIVD repeat
       0.13   12.1   0.1         17    5.3   0.1    2.8  2  Biotin_lipoyl_2  Biotin-lipoyl like
        1.6    9.4   4.3         38    4.9   0.0    3.8  3  RHS_repeat       RHS Repeat


Domain annotation for each model (and alignments):
>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.3   8.3   4.2e-58   1.3e-54       2     237 .]      78     319 ..      77     319 .. 0.96
   2 !   28.5   0.1   3.4e-10     1e-06       3      91 ..     303     390 ..     301     392 .] 0.90

  Alignments for each domain:
  == domain 1  score: 185.3 bits;  conditional E-value: 4.2e-58
       PQQ_2   2 egvvsaldaatGaelWrvdlarp..........lgggvsravlsggtlfvatgggrlvaldaatGkvlWettlegpvvgaplvaegrvvvvasdgqlia 90 
                 +g+v+al+a++G+e+W+v+la++          l+ggv  +v sgg++++++++++l+al++++G+v W+t++ g+++++p v++g+v+v++s+gql+a
  CTQ29326.1  78 KGTVKALNADDGKEVWSVNLAEKdgwfsrtpalLSGGV--TV-SGGHVYIGSEKAQLYALNTSDGTVAWQTRVAGEALSRPVVSDGMVLVHTSNGQLQA 173
                 89******************7745667777788*****..99.******************************************************** PP

       PQQ_2  91 ldaedGkrlWstqqrseepaelrssaspavagdtvvvgessgklvaldpkdGkvlWerelaaprgtselsrvgdisgrpvvaegtVyassgqgrllald 189
                 l+ +dG ++W++ ++  + ++lr+ ++pa a + ++vg+ +g++ a+  + G+ +W++ ++ ++g +e++r++d++ +p++++g Vya +++g+l+ald
  CTQ29326.1 174 LNETDGAVKWTVNLDM-PALSLRGESAPATAYGAAIVGGDNGRVSAVLMQQGQMIWQQRISTATGPTEIDRLNDVDTTPIIVNGVVYALAYNGNLTALD 271
                 ***********99988.********************************************************************************** PP

       PQQ_2 190 latgrrlwskeissinglpildgdllyvvsa.gelialdratGavlWkt 237
                 l++g+  w++e++s+n   i+dg+ +y+v++ ++l+al    G  lW++
  CTQ29326.1 272 LRSGQIMWKRELGSVND-FIVDGNRIYLVDQnDRLLALTTDGGVTLWTQ 319
                 *****99**********.************88***************86 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 3.4e-10
       PQQ_2   3 gvvsaldaatGaelWrv.dlarplgggvsravlsggtlfvatgggrlvaldaatGkvlWettl.egpvvgaplvaegrvvvvasdgqlial 91 
                 +++ al  + G +lW++ dl   l   ++ +vl +g l+v++ +g ++ +++++G  + ++++ ++ ++++p va+gr++ +a dg+l+a+
  CTQ29326.1 303 DRLLALTTDGGVTLWTQsDL---LHRLLTAPVLYNGNLVVGDSEGYMHWVNPEDGHFVAQQKVdSSGFLTDPVVADGRLLIQAKDGTLYAI 390
                 5667888999*******888...7777778899******************************98999********************998 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.4   3.7e-06     0.011       5      40 .]      48      88 ..      46      88 .. 0.81
   2 !   27.4   0.2   1.1e-09   3.3e-06       1      39 [.      89     137 ..      89     138 .. 0.87
   3 !   28.2   0.0   6.4e-10   1.9e-06       1      38 [.     139     176 ..     139     178 .. 0.95
   4 !   13.2   0.4   3.3e-05     0.098       1      36 [.     179     219 ..     179     219 .. 0.86
   5 !   23.2   0.0   2.4e-08   7.1e-05       1      40 []     224     274 ..     224     274 .. 0.78
   6 !   12.6   0.0   5.1e-05      0.15       1      36 [.     275     308 ..     275     311 .. 0.89
   7 !    9.7   0.1    0.0004       1.2       3      40 .]     315     353 ..     313     358 .. 0.81
   8 !   12.0   0.0   7.7e-05      0.23      12      36 ..     366     390 ..     359     392 .] 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.7e-06
       PQQ_3  5 Wsvqlpgpvnssp......avdgglvyvgtgdGtlyAlDaet 40
                Ws+++++ + +        a+++g+vy+++  Gt+ Al+a++
  CTQ29326.1 48 WSTSVGDGI-GEFysnlhpAFADGVVYAADRKGTVKALNADD 88
                889888644.333455578********************986 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 1.1e-09
       PQQ_3   1 GevlWsv..........qlpgpvnsspavdgglvyvgtgdGtlyAlDae 39 
                 G+++Wsv          ++p+ + ++++v+gg+vy+g++   lyAl++ 
  CTQ29326.1  89 GKEVWSVnlaekdgwfsRTPALLSGGVTVSGGHVYIGSEKAQLYALNTS 137
                 99*****88888888888888888888*******************975 PP

  == domain 3  score: 28.2 bits;  conditional E-value: 6.4e-10
       PQQ_3   1 GevlWsvqlpgpvnsspavdgglvyvgtgdGtlyAlDa 38 
                 G+v W++++ g++ s p+v++g v v t++G l Al+ 
  CTQ29326.1 139 GTVAWQTRVAGEALSRPVVSDGMVLVHTSNGQLQALNE 176
                 99**********************************85 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 3.3e-05
       PQQ_3   1 GevlWsvql..pg...pvnsspavdgglvyvgtgdGtlyAl 36 
                 G v+W+v+l  p+   ++ s+pa++ g   vg+++G++ A+
  CTQ29326.1 179 GAVKWTVNLdmPAlslRGESAPATAYGAAIVGGDNGRVSAV 219
                 899****553366778999*******************986 PP

  == domain 5  score: 23.2 bits;  conditional E-value: 2.4e-08
       PQQ_3   1 GevlWsv...........qlpgpvnsspavdgglvyvgtgdGtlyAlDaet 40 
                 G+ +W++           +   +v ++p +++g+vy+ +++G+l+AlD ++
  CTQ29326.1 224 GQMIWQQristatgpteiDRLNDVDTTPIIVNGVVYALAYNGNLTALDLRS 274
                 7889999776666655442223777778********************986 PP

  == domain 6  score: 12.6 bits;  conditional E-value: 5.1e-05
       PQQ_3   1 GevlWsvqlpgpvnsspavdgglvyvgtgdGtlyAl 36 
                 G++ W+++l++ v     vdg+++y ++ + +l Al
  CTQ29326.1 275 GQIMWKRELGS-V-NDFIVDGNRIYLVDQNDRLLAL 308
                 7888******5.6.579******************9 PP

  == domain 7  score: 9.7 bits;  conditional E-value: 0.0004
       PQQ_3   3 vlWsv.qlpgpvnsspavdgglvyvgtgdGtlyAlDaet 40 
                 +lW++ +l  ++ ++p++++g ++vg++ G ++ +++e+
  CTQ29326.1 315 TLWTQsDLLHRLLTAPVLYNGNLVVGDSEGYMHWVNPED 353
                 688886666689999*************88887777764 PP

  == domain 8  score: 12.0 bits;  conditional E-value: 7.7e-05
       PQQ_3  12 pvnsspavdgglvyvgtgdGtlyAl 36 
                    + p+v++g++ + + dGtlyA+
  CTQ29326.1 366 GFLTDPVVADGRLLIQAKDGTLYAI 390
                 445789******************8 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.3   5.2e-11   1.5e-07       1      36 [.      70     105 ..      70     107 .. 0.93
   2 !   27.6   0.0   6.1e-10   1.8e-06       1      37 [.     120     156 ..     120     157 .. 0.96
   3 !   25.7   0.0   2.4e-09   7.3e-06       1      35 [.     160     194 ..     160     196 .. 0.91
   4 !   13.7   0.0   1.5e-05     0.044       3      32 ..     207     236 ..     205     242 .. 0.87
   5 !   27.6   0.1   5.9e-10   1.8e-06       1      32 [.     256     287 ..     256     292 .. 0.92
   6 ?   -0.3   0.1      0.39   1.2e+03       1      21 [.     294     314 ..     294     319 .. 0.70
   7 ?    0.9   0.0      0.17   5.1e+02       4      15 ..     379     390 ..     376     392 .] 0.79

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 5.2e-11
                 TEEEEEETTSEEEEEETTTCCEEEEEESSSCGSSES CS
         PQQ   1 gvvylgsadGylyAlDadTGkvlWrfktggpvlslp 36 
                 gvvy++++ G++ Al+ad+Gk++W++++  ++ + +
  CTQ29326.1  70 GVVYAADRKGTVKALNADDGKEVWSVNLAEKDGWFS 105
                 79**************************99999865 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 6.1e-10
                 TEEEEEETTSEEEEEETTTCCEEEEEESSSCGSSESE CS
         PQQ   1 gvvylgsadGylyAlDadTGkvlWrfktggpvlslpi 37 
                 g+vy+gs   +lyAl+ ++G+v W++++ g+ ls+p+
  CTQ29326.1 120 GHVYIGSEKAQLYALNTSDGTVAWQTRVAGEALSRPV 156
                 79*********************************98 PP

  == domain 3  score: 25.7 bits;  conditional E-value: 2.4e-09
                 TEEEEEETTSEEEEEETTTCCEEEEEESSSCGSSE CS
         PQQ   1 gvvylgsadGylyAlDadTGkvlWrfktggpvlsl 35 
                 g v +++ +G+l Al+ ++G v+W+++++ p lsl
  CTQ29326.1 160 GMVLVHTSNGQLQALNETDGAVKWTVNLDMPALSL 194
                 568899**********************9998875 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 1.5e-05
                 EEEEETTSEEEEEETTTCCEEEEEESSSCG CS
         PQQ   3 vylgsadGylyAlDadTGkvlWrfktggpv 32 
                  ++g ++G++ A+ +  G+++W+ +++ + 
  CTQ29326.1 207 AIVGGDNGRVSAVLMQQGQMIWQQRISTAT 236
                 6899********************998876 PP

  == domain 5  score: 27.6 bits;  conditional E-value: 5.9e-10
                 TEEEEEETTSEEEEEETTTCCEEEEEESSSCG CS
         PQQ   1 gvvylgsadGylyAlDadTGkvlWrfktggpv 32 
                 gvvy+  ++G+l AlD+++G+++W+ ++g++ 
  CTQ29326.1 256 GVVYALAYNGNLTALDLRSGQIMWKRELGSVN 287
                 799************************99876 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 0.39
                 TEEEEEETTSEEEEEETTTCC CS
         PQQ   1 gvvylgsadGylyAlDadTGk 21 
                 +++yl + + +l+Al  d G 
  CTQ29326.1 294 NRIYLVDQNDRLLALTTDGGV 314
                 689999777799999844355 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.17
                 EEEETTSEEEEE CS
         PQQ   4 ylgsadGylyAl 15 
                  +  +dG+lyA+
  CTQ29326.1 379 LIQAKDGTLYAI 390
                 56779******8 PP

>> LVIVD  LVIVD repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.002         6       6      23 ..     114     131 ..     112     139 .. 0.84
   2 ?    3.1   0.1     0.019        58       2      23 ..     284     305 ..     283     308 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.002
       LVIVD   6 dvavsGnYaYvAdqdngL 23 
                  v vsG+ +Y++  +  L
  CTQ29326.1 114 GVTVSGGHVYIGSEKAQL 131
                 699*********887777 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.019
       LVIVD   2 GdaqdvavsGnYaYvAdqdngL 23 
                 G++ d  v Gn  Y  dq+  L
  CTQ29326.1 284 GSVNDFIVDGNRIYLVDQNDRL 305
                 899999************8776 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.018        54       7      24 ..      75      92 ..      73      93 .. 0.89
   2 ?    5.3   0.1    0.0057        17      10      23 ..     213     226 ..     206     229 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.018
  Biotin_lipoyl_2  7 apvsGrVaqlnVkdGqrV 24
                     a+  G+V++ln  dG++V
       CTQ29326.1 75 ADRKGTVKALNADDGKEV 92
                     6667************99 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0057
  Biotin_lipoyl_2  10 sGrVaqlnVkdGqr 23 
                      +GrV+++++++Gq 
       CTQ29326.1 213 NGRVSAVLMQQGQM 226
                      69***********7 PP

>> RHS_repeat  RHS Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.72   2.1e+03      25      37 ..     168     180 ..     165     184 .. 0.61
   2 ?    4.9   0.0     0.013        38      14      36 ..     255     275 ..     254     278 .. 0.77
   3 ?    2.5   0.7     0.075   2.3e+02       3      18 ..     301     317 ..     300     329 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.72
  RHS_repeat  25 qGrlttlTdpdGr 37 
                  G+l++l  +dG+
  CTQ29326.1 168 NGQLQALNETDGA 180
                 4666666666664 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.013
  RHS_repeat  14 sGrvttYtYDaqGrlttlTdpdG 36 
                 +G+v+++ Y+  G+lt+l   +G
  CTQ29326.1 255 NGVVYALAYN--GNLTALDLRSG 275
                 6888899998..99988766665 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.075
  RHS_repeat   3 aaGrLtevtdpsGrv.t 18 
                  ++rL++ t+  G++ +
  CTQ29326.1 301 QNDRLLALTTDGGVTlW 317
                 46677777666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3025.28
//
Query:       CTQ29327.1  [L=206]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-57  192.0   8.2    9.7e-57  191.8   8.2    1.0  1  TPR_21    Tetratricopeptide repeat-like domain
    1.8e-05   25.2   7.3    4.7e-05   23.8   3.3    2.8  3  TPR_19    Tetratricopeptide repeat
    9.5e-05   23.0   3.9      0.033   14.9   0.7    3.0  3  TPR_16    Tetratricopeptide repeat
     0.0021   17.5  10.6      0.012   15.0   2.3    1.8  2  TPR_MalT  MalT-like TPR region
  ------ inclusion threshold ------
      0.014   15.5   4.6        1.4    9.2   0.0    3.7  4  TPR_2     Tetratricopeptide repeat
      0.037   14.8   9.0        6.2    7.9   0.3    4.1  4  TPR_14    Tetratricopeptide repeat
       0.04   14.2   4.7       0.16   12.3   0.8    3.1  4  TPR_12    Tetratricopeptide repeat
        3.3    8.6   6.9        2.2    9.1   0.1    3.2  4  TPR_6     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.8   8.2   4.3e-60   9.7e-57       1     192 [.      15     205 ..      15     206 .] 0.99

  Alignments for each domain:
  == domain 1  score: 191.8 bits;  conditional E-value: 4.3e-60
      TPR_21   1 KawWkengklilvgvvlalvglaGwqgwqdyqeeqaeeAsalYqqlqeaveakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqL 99 
                 K++++engk+++vgv+l++++l+Gw++w+++q+++a+ As +Y++ ++a++++  + +   ae++a+++++t Y+a+a+L lA++ ve++dl +A++qL
  CTQ29327.1  15 KRFFAENGKALAVGVILGIGALVGWRYWTSHQQDTARDASLAYEKATSALKSNTPE-VLSGAEKFAADNKNT-YGAFASLELAQHFVEQNDLPNAEKQL 111
                 99*********************************************999998888.***************.************************** PP

      TPR_21 100 ewvlekakdeelkalarlRLarvllaekkydeAlktLeakkeeafaalvaelrGDilvaqgkldeAraaYqaAlaaleeka.rellqlKlddLa 192
                 ++ l+ a+d++lk+++++RLarv+l++k++d+AlktL++ k e+++a va+lrG+il+++g+++ Araa++a++++ ++ a +e++++K+++L+
  CTQ29327.1 112 QQGLAAASDDNLKSVISMRLARVQLQMKQADAALKTLDSIKGEGWTAIVADLRGEILLSKGDKQGARAAWEAGVKSDASPAlSEMMRMKMNNLS 205
                 ********************************************************************************************96 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.6   0.00096       2.2      27      60 ..      90     122 ..      56     129 .. 0.84
   2 !   23.8   3.3   2.1e-08   4.7e-05       2      51 ..      99     151 ..      98     155 .. 0.86
   3 ?    1.8   0.0      0.16   3.6e+02      32      62 ..     165     194 ..     157     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00096
      TPR_19  27 arllLAeallalgqldeAealLdalpeedpddar 60 
                 a l LA+  +++++l  Ae+ L++ ++++ d  +
  CTQ29327.1  90 ASLELAQHFVEQNDLPNAEKQLQQGLAAASD-DN 122
                 45799********************999999.44 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 2.1e-08
      TPR_19   2 laegdyaeAlalleqalqedpk...naearllLAeallalgqldeAealLdal 51 
                 ++++d+ +A + l+q l+++ +    + + ++LA+++l+++q d+A ++Ld +
  CTQ29327.1  99 VEQNDLPNAEKQLQQGLAAASDdnlKSVISMRLARVQLQMKQADAALKTLDSI 151
                 699************6655444455999999********************98 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.16
      TPR_19  32 AeallalgqldeAealLdalpeedpddarya 62 
                  e+ll+ g+ + A+a+ +a  ++d+  ++++
  CTQ29327.1 165 GEILLSKGDKQGARAAWEAGVKSDAS-PALS 194
                 6899**********999999888887.6665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.1   7.1e+03      53      60 ..      52      60 ..      45      69 .. 0.47
   2 !   14.9   0.7   1.5e-05     0.033       1      60 [.      92     151 ..      92     158 .. 0.86
   3 !    7.7   0.0    0.0025       5.6       4      29 ..     165     190 ..     163     199 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.1
      TPR_16 53 Aa.alyraa 60
                 a  +y++a
  CTQ29327.1 52 DAsLAYEKA 60
                333333332 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 1.5e-05
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraa 60 
                 l+la+ +++++d + A+++l++ l++++++ +    ++ l+++ l+ +  ++A+  +++ 
  CTQ29327.1  92 LELAQHFVEQNDLPNAEKQLQQGLAAASDDNLKSVISMRLARVQLQMKQADAALKTLDSI 151
                 679************************999998889999999999888888888766665 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0025
      TPR_16   4 araalragdyddAaaaleaalkrdps 29 
                 + ++l  gd + A+aa+ea +k+d+s
  CTQ29327.1 165 GEILLSKGDKQGARAAWEAGVKSDAS 190
                 55566666666666666666666644 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   1.4   8.5e-06     0.019     123     184 ..      89     148 ..      52     149 .. 0.60
   2 !   15.0   2.3   5.5e-06     0.012     123     188 ..      89     152 ..      79     192 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 8.5e-06
    TPR_MalT 123 fllvlladllyEwndLeeAeqhlqeGielleqlepeaaldayvllarialaqGdleeAetll 184
                 f+  +la+ + E+ndL  Ae+ lq+G++ + + + +    + + lar++l+  ++++A+++l
  CTQ29327.1  89 FASLELAQHFVEQNDLPNAEKQLQQGLAAASDDNLKSV--ISMRLARVQLQMKQADAALKTL 148
                 34445566666666666666666666555555433333..3334555555555555555555 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 5.5e-06
    TPR_MalT 123 fllvlladllyEwndLeeAeqhlqeGielleqlepeaaldayvllarialaqGdleeAetllekae 188
                 f+  +la+ + E+ndL  Ae+ lq+G++ + + + +    + + lar++l+  ++++A+++l+ ++
  CTQ29327.1  89 FASLELAQHFVEQNDLPNAEKQLQQGLAAASDDNLKSV--ISMRLARVQLQMKQADAALKTLDSIK 152
                 56667899999***************888877644444..55668999999999999999999775 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.8     4e+03      20      28 ..      53      61 ..      46      66 .. 0.75
   2 ?    4.5   0.2      0.02        44       5      32 ..      92     119 ..      88     121 .. 0.84
   3 ?    1.0   0.0      0.26   5.9e+02       6      22 ..     130     146 ..     127     149 .. 0.87
   4 ?    9.2   0.0   0.00063       1.4       5      29 ..     162     186 ..     158     189 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.8
       TPR_2 20 AleafekAl 28
                A  a+ekA 
  CTQ29327.1 53 ASLAYEKAT 61
                566788875 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.02
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldP 32 
                  +l++   +++d+  A++ +++ l+ + 
  CTQ29327.1  92 LELAQHFVEQNDLPNAEKQLQQGLAAAS 119
                 67999999**************998765 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.26
       TPR_2   6 nlGlayyklgdyeeAle 22 
                 +l+++ +++++ + Al+
  CTQ29327.1 130 RLARVQLQMKQADAALK 146
                 899**********9998 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00063
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                   +G++++ +gd + A++a+e+ ++
  CTQ29327.1 162 DLRGEILLSKGDKQGARAAWEAGVK 186
                 579*****************98776 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.2   2.8e+03       9      23 ..      39      53 ..      35      67 .. 0.72
   2 ?    7.9   0.3    0.0028       6.2       5      34 ..      92     121 ..      88     124 .. 0.90
   3 ?    5.1   0.2     0.023        51       6      25 ..     130     149 ..     127     157 .. 0.91
   4 ?    4.6   0.1     0.032        72       6      31 ..     163     188 ..     158     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.2
      TPR_14  9 eallalGdpdeAial 23
                + ++++ + d+A+++
  CTQ29327.1 39 WRYWTSHQQDTARDA 53
                668888888888765 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0028
      TPR_14   5 lalaeallalGdpdeAiallrralalaPdd 34 
                 l+la+ + ++ d+  A++ l++ la+a dd
  CTQ29327.1  92 LELAQHFVEQNDLPNAEKQLQQGLAAASDD 121
                 79***********************88665 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.023
      TPR_14   6 alaeallalGdpdeAiallr 25 
                 +la++ l+  + d+A++ l+
  CTQ29327.1 130 RLARVQLQMKQADAALKTLD 149
                 79***************997 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.032
      TPR_14   6 alaeallalGdpdeAiallrralala 31 
                 +++e+ll  Gd ++A+a+ ++ ++ +
  CTQ29327.1 163 LRGEILLSKGDKQGARAAWEAGVKSD 188
                 6899*****************98843 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.7   3.9e+03      62      75 ..      51      64 ..      38      66 .. 0.63
   2 ?    8.4   0.2    0.0012       2.6      42      75 ..      85     118 ..      72     120 .. 0.86
   3 ?   12.3   0.8   7.1e-05      0.16       5      68 ..      91     148 ..      87     150 .. 0.88
   4 ?    5.4   0.1    0.0099        22       8      65 ..     130     178 ..     123     182 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.7
      TPR_12 62 eeAlelleealaia 75
                ++A  ++e+a+ ++
  CTQ29327.1 51 RDASLAYEKATSAL 64
                45666677776655 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0012
      TPR_12  42 pltattlrnLgrlyralgryeeAlelleealaia 75 
                  + a +   L++ + +++++  A++ l++ la+a
  CTQ29327.1  85 TYGAFASLELAQHFVEQNDLPNAEKQLQQGLAAA 118
                 466888999**********************987 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 7.1e-05
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 +l +la+   ++ ++  A++ l++ l++a      d  l + +   L+r+++++++ ++Al+ l
  CTQ29327.1  91 SL-ELAQHFVEQNDLPNAEKQLQQGLAAA-----SDDNLKSVISMRLARVQLQMKQADAALKTL 148
                 44.7999999*******************.....555699999999**************9865 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0099
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAl 65 
                 +la v +++++ d Al+ l+          G+ +  ta++    g++++  g+ + A+
  CTQ29327.1 130 RLARVQLQMKQADAALKTLDSI-------KGEGW--TAIVADLRGEILLSKGDKQGAR 178
                 6777888888888888777665.......45544..6666666666666666666665 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       5.9   1.3e+04      19      25 ..      53      59 ..      45      63 .. 0.50
   2 ?   -2.5   0.0       4.9   1.1e+04      11      25 ..      99     113 ..      90     117 .. 0.62
   3 ?    9.1   0.1     0.001       2.2       4      26 ..     129     151 ..     128     154 .. 0.90
   4 ?    2.0   0.1      0.17   3.9e+02       6      24 ..     164     182 ..     162     183 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.9
                HHHHHHH CS
       TPR_6 19 Alealer 25
                A  a+e+
  CTQ29327.1 53 ASLAYEK 59
                3335554 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.9
                 HHHHHHHHHHHHHHH CS
       TPR_6  11 rklgdtdkAlealer 25 
                  +++d  +A + l++
  CTQ29327.1  99 VEQNDLPNAEKQLQQ 113
                 456677677666664 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerl 26 
                 ++la+ +++++++d+Al++l+++
  CTQ29327.1 129 MRLARVQLQMKQADAALKTLDSI 151
                 58*****************9875 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAleale 24 
                 +++ +++ gd++ A++a+e
  CTQ29327.1 164 RGEILLSKGDKQGARAAWE 182
                 688888878*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1586.71
//
Query:       CTQ29328.1  [L=424]
Description: histidyl tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-46  156.5   0.0    1.2e-45  156.1   0.0    1.1  1  tRNA-synt_His   Histidyl-tRNA synthetase
    1.2e-39  136.1   0.0    1.7e-39  135.6   0.0    1.2  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    8.7e-11   41.8   0.1    2.2e-10   40.5   0.0    1.7  2  HGTP_anticodon  Anticodon binding domain
    0.00076   18.6   0.0       0.23   10.5   0.0    2.8  2  tRNA-synt_2     tRNA synthetases class II (D, K and N)
     0.0044   16.5   0.0       0.11   12.0   0.0    2.2  2  tRNA-synt_2d    tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.1   0.0   3.4e-49   1.2e-45       1     310 []      10     312 ..      10     312 .. 0.86

  Alignments for each domain:
  == domain 1  score: 156.1 bits;  conditional E-value: 3.4e-49
                    T---EETCHHHHHHHHHHHHHHHHHHTT-EEEE--SEEEHHHHCTTSTCCHH....HS-EEE-TTSSEEEE-SSSHHHHHHHHHHHHH.TSS-EEE CS
  tRNA-synt_His   1 glrdllpeeaekieelrrrlldlfeswGYelVspPllEyldslltgagedld....qtfklvDqsgrllglRaDiTpqvaRiaahrln.rerplRl 91 
                    g++d lp e + +++++ +l +++ s+GY+++++P++E +  + +++ge +d    +++ + D +g++l lR++ T+  +R+  ++    ++ +Rl
     CTQ29328.1  10 GMNDYLPGETALWQRIEGSLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDvvekEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLlYNQEQRL 105
                    899******************************************999998888778************************97766555******* PP

                    EEEEEEEESS-SSTT--CCEEEEEEEEESS-SHHHHHHHHHHHHHHHHHHCTS.SSEEEEEEETCHHHHHHHHTT--HHHHHHHHHHHHCT-HHHH CS
  tRNA-synt_His  92 cYaGsvlrtrpdglgrsreplQvGaEliGaegleadlEvlslllealeaaagv.kelrldlghvglvralleaaglsesleeallaalarkdlael 186
                    +Y G+++r ++ + gr r++ Q+GaE++G +g++ d+E++ l +  + + +g+ ++++l+l+++g ++   ++a+ +++l + l ++ ++ d  + 
     CTQ29328.1 106 WYVGPMFRHERPQKGRYRQFHQIGAEVFGLQGPDIDAELIMLTARWW-RELGIsEHVSLELNSIGSLE---ARANYRDALVAYLEQFTDKLDEDSK 197
                    ***********************************************.59995499*******99887...4444444444444444444444444 PP

                    HHHHHCCTTHHHCCHCC....HCCHCCCHHHHCHCCHCTHHHHHHHHHHHHHHHHHHHHHHHH-TTEEE-TT--TTTTT--SEEEEEEETT-SS.. CS
  tRNA-synt_His 187 kelaaeaglkealrellkal.elygdaevleealealaaapalqaaldeleelaallealakpevrvtlDlaelrgyeYytGlvFaayaegvgq.. 279
                    ++++          + l+ l + + d ++l + + al + +  ++ +++++ l+all++++   +r+t++  ++rg++Yy+ +vF+ ++ + g+  
     CTQ29328.1 198 RRMYT---------NPLRVLdSKNPDVQALLNDAPALGD-YLDEESKAHFAGLCALLDDAG---IRYTVNQRLVRGLDYYNRTVFEWVTTSLGSqg 280
                    44443.........3455555578899999999887755.45599**************86...************************98876545 PP

                    -SEEEEEECTTTGGG.T---EEEEEEEEHHHH CS
  tRNA-synt_His 280 aiarGGrYdelgaaf.grarpAtGfsldleal 310
                    ++  GGrYd+l++++ gra p++Gf++ le+l
     CTQ29328.1 281 TVCAGGRYDGLVEQLgGRATPGVGFAMGLERL 312
                    *****************************997 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.0   4.8e-43   1.7e-39       1     179 []      68     320 ..      68     320 .. 0.99

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 4.8e-43
                   EEEEETTSEEEEE-SSSHHHHHHHHHHHEE..EBGGSSEEEEEEEEEEBTTTSTBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   1 YkledrndreyiLkPtneetfvelirdevl..rskrLPlklyqiqtkyRdEksdsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlg 95 
                   Y++edrn+++++L+P++++++v+++++++l  +++   ++l+++++++R+E++ ++G  R+r+Fhq +++vf++++  +d++++li++++r++++lg
    CTQ29328.1  68 YTFEDRNGDSLTLRPEGTAGCVRAGIEHGLlyNQE---QRLWYVGPMFRHERP-QKG--RYRQFHQIGAEVFGLQG--PDIDAELIMLTARWWRELG 156
                   9****************************999***...***************.***..*****************..******************* PP

                   .SCEEEEEEGTTSC................................................................................... CS
                   xxxxxxxxxxxxxx................................................................................... RF
  tRNA-synt_2b  96 lefraiielmsaks................................................................................... 109
                   +++++ +el+s++s                                                                                   
    CTQ29328.1 157 ISEHVSLELNSIGSlearanyrdalvayleqftdkldedskrrmytnplrvldsknpdvqallndapalgdyldeeskahfaglcallddagirytv 253
                   ***********999*********************************************************************************** PP

                   .......BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEEEEEEEEEHHHHHHHHHHHH CS
                   .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 110 .......adykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksvimicaaigveRllsaileqn 179
                          +dy+++++fe+v+ sl++++ ++++++++++l+e+lg+++        ++  +++a+g+eRl+++++++n
    CTQ29328.1 254 nqrlvrgLDYYNRTVFEWVTTSLGSQG-TVCAGGRYDGLVEQLGGRA--------TP-GVGFAMGLERLVLLVQAVN 320
                   ***************************.*******************........99.89*************9976 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.9     1e+04      20      36 ..     239     255 ..     230     259 .. 0.75
   2 !   40.5   0.0   6.1e-14   2.2e-10       9      92 ..     338     420 ..     329     422 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.9
                     HHHHHHHTTTSEEEEES CS
  HGTP_anticodon  20 klaeeLraagirveldd 36 
                      l++ L +agir  +++
      CTQ29328.1 239 GLCALLDDAGIRYTVNQ 255
                     56777889999888765 PP

  == domain 2  score: 40.5 bits;  conditional E-value: 6.1e-14
                     SSHHHHHHHHHHHHHHHHTT..TSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHH CS
  HGTP_anticodon   9 ekaeeleeyakklaeeLraa..girvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklk 92 
                     +   + +  a++lae+ r+a  g++   +  +++++k++++ad+ g ++a+vvGe e+ +g v v+d+ ++eq +v+ +++++ l+
      CTQ29328.1 338 T---DTQSAAMRLAEQVRDAlpGVKLMTNHGGGNFKKQFARADKWGARVALVVGESEIADGNVVVKDLRSGEQTTVTQESVAAHLR 420
                     3...35667777777777773356677777999********************************************999988766 PP

>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.19   6.8e+02      31      52 ..      28      49 ..      21      68 .. 0.86
   2 !   10.5   0.0   6.4e-05      0.23      92     297 ..     103     315 ..      97     321 .. 0.53

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.19
                 HHHHHHHHTT-EE----SEESS CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 31 avrkyleengfieietPiLsks 52
                 +++++l + g+ ei  Pi+ ++
   CTQ29328.1 28 SLKQVLGSYGYSEIRLPIVEQT 49
                 67889999**********9887 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 6.4e-05
                  SEEEEEEEEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS...... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...... RF
  tRNA-synt_2  92 drvfqiaraFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaieklnei...... 183
                  +r + ++++FR E+ ++ r   +F qi ae+  ++  di   l  l  + ++e+  ++ +++    +    ++ +   r +y++a+  + e+      
   CTQ29328.1 103 QRLWYVGPMFRHERPQKGRYR-QFHQIGAEVFGLQGPDIDAELIMLTARWWREL--GISEHVSLELN----SIGSLEARANYRDALVAYLEQftdkld 193
                  578899999999999999998.99999999988888888888888888888888..44333333332....333334678888887776665444443 PP

                  ...-SS--HHHHHHHHHHS--SEEEEEEEB.......GGGSTTCBBBSTTS..........TTBBSEEEEEETTE.EEEEEEEB--SHHHHHHHHHHC CS
                  ...xxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxx..........xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 184 ...gkdldkaderalvkkeknepvfvtdfP.......aelkpFyarkeedd..........kkltesyDllingv.ElvgGslRiedpeeleeklksk 260
                     +  + ++++r+l  k+  +  ++ d P       +e k   a  +             ++l++++D + + v E v+ s            l s+
   CTQ29328.1 194 edsKRRMYTNPLRVLDSKNPDVQALLNDAPalgdyldEESKAHFAGLCALLddagirytvnQRLVRGLDYYNRTVfEWVTTS------------LGSQ 279
                  3332222233333333355555555555554444444222222222222222222333333333333333333333333222............2233 PP

                  CHHSSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 261 gldeeaeekfswylealeyGapphgGlglGldRlvml 297
                  g    a  +++ ++e+l   a p  G+++Gl+Rlv l
   CTQ29328.1 280 GTV-CAGGRYDGLVEQLGGRATPGVGFAMGLERLVLL 315
                  333.334456666666666666666666666666655 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0     3e-05      0.11      12     128 ..      15     129 ..       4     142 .. 0.83
   2 ?    2.0   0.1     0.033   1.2e+02     207     227 ..     298     318 ..     285     321 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
                   SHSB-SHHHHHHHHHHHHHHCTTCEESSTTSEEEHHHHTSTTTSTTTSHHHCHTTSEBTCTSSS-ECESEEE-SSTHHHHHHHH....TTS-SSEEE CS
  tRNA-synt_2d  12 eagklhpltkvleeikeiflelgfeevegpevesefynfdaLnvpqdhpaRdmqdtFylkkpekaveekllLRthttavqirtl....ekkkppiki 104
                    +g++   +++   +k+++ ++g++e++ p ve+      a+    d   ++m   + + ++++   ++l+LR   ta  +r+        ++ +++
    CTQ29328.1  15 LPGETALWQRIEGSLKQVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEM---YTF-EDRN--GDSLTLRPEGTAGCVRAGiehgLLYNQEQRL 105
                   56777788899999******************999888888877777655554...444.4444..679*************9867666677899** PP

                   EEEEEEEBSST-SSSB-SEEEEEE CS
  tRNA-synt_2d 105 isigrvfRrdavDathlaeFhqve 128
                     +g +fR++   + +  +Fhq+ 
    CTQ29328.1 106 WYVGPMFRHERPQKGRYRQFHQIG 129
                   **********************96 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.033
                   TTSEEEEEEEEHHHHHHHHHT CS
  tRNA-synt_2d 207 eevsgfafGlGveRlamlkyg 227
                   + ++g++f +G+eRl +l   
    CTQ29328.1 298 RATPGVGFAMGLERLVLLVQA 318
                   57899**********999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3376.19
//
Query:       CTQ29329.1  [L=373]
Description: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-131  438.3   0.1   2.3e-131  438.0   0.1    1.0  1  GcpE      GcpE protein


Domain annotation for each model (and alignments):
>> GcpE  GcpE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.0   0.1  1.3e-135  2.3e-131       2     350 ..      13     353 ..      12     354 .. 0.99

  Alignments for each domain:
  == domain 1  score: 438.0 bits;  conditional E-value: 1.3e-135
                 --EEETTEEESTTS--EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHHTT-SS-EEEEE-SSCHHHHHHHHCC-SEEE CS
        GcpE   2 revkvgkvkiGgeapiavqsMtntdtadveatvkqikrlaeaGaelvRvtvqdeeeaealkeikeklkkkglkvplvaDihfnpklaleaaeagvdkvR 100
                 +++ vg+v+iG++apiavqsMtnt+t+dv+atv+qik+l+++Ga++vRv+v+++++aea+k ik+++     +vplvaDihf++++al++ae+gvd++R
  CTQ29329.1  13 KRIYVGNVPIGDGAPIAVQSMTNTRTTDVAATVNQIKALERVGADIVRVSVPTMDAAEAFKLIKQQV-----NVPLVADIHFDYRIALKVAEYGVDCLR 106
                 6799***************************************************************.....*************************** PP

                 E-TTTSSSTTHHHHHHHHHHHHHHHHT-EEEEEEEGGG--HHHHHHHCC.THHHHHHHHHHHHHHHHHTT--GEEEEEE-SSHHHHHHHHHHHHHH--S CS
        GcpE 101 iNPGnigdgkkkeekvkelveaakekgtaiRiGvNhGSLskrllskygd.tpealvesalefleilekldfkdiviSlKasnvvvmveayrllaeeldy 198
                 iNPGnig+    ee+++ +v++a++k+++iRiGvN+GSL+k+l++kyg+ tp+al+esa+++++ l++l+f+++++S+Kas+v+ +ve+yrlla+++d 
  CTQ29329.1 107 INPGNIGN----EERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEpTPQALLESAMRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQ 201
                 ********....*************************************9************************************************* PP

                 -EEE--TT-ECHHHHHHHHHHHHHHHHHTT--SEE---ECS-CCHHHHHHHHHHHHTTS--SS-EEEE----TTS-CHHHHHHHHHHHHCCCHHCG-EE CS
        GcpE 199 plHlGvTEAGegedgriksavgigaLLaegiGdTiRvSLtedpeeEvkvakeiLqalrlrksktelisCPsCgRtlfdlqelveeveealehlkkglki 297
                 plHlG+TEAG  ++g++ksa+g+g LL+egiGdT+RvSL++dp+eE+kv+ +iL++lr+r++++++i+CP+C+R++fd++ +v+ +e++le++ +++++
  CTQ29329.1 202 PLHLGITEAGGARSGAVKSAIGLGLLLSEGIGDTLRVSLAADPVEEIKVGFDILKSLRIRSRGINFIACPTCSRQEFDVIGTVNALEQRLEDIITPMDV 300
                 *************************************************************************************************** PP

                 EEESSTCCHHHHCCCSSEEEEEBTTCEEEEETTEEEECEESSCHHHHHHHHHH CS
        GcpE 298 avmGCiVNGpgEaadAdlGivggkgkvslykkkevvkkvpeeeavdellelik 350
                 +++GC+VNGpgEa  + lG++gg++k  ly+++    ++++++++d+l + i+
  CTQ29329.1 301 SIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGVRKDRLDNNDMIDQLEARIR 353
                 ************************************************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2871.40
//
Query:       CTQ29330.1  [L=331]
Description: conserved hypothetical protein; putative HTH-type transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-23   82.0   0.0    5.1e-23   81.0   0.0    1.5  1  DUF4115   Domain of unknown function (DUF4115)
      1e-14   54.1   0.3    1.7e-14   53.4   0.3    1.3  1  HTH_25    Helix-turn-helix domain
    2.3e-09   37.5   0.4    2.3e-09   37.5   0.4    1.8  2  HTH_31    Helix-turn-helix domain
    1.4e-06   28.2   0.0      3e-06   27.2   0.0    1.5  1  HTH_3     Helix-turn-helix
    1.5e-06   28.2   0.0    2.5e-06   27.4   0.0    1.3  1  HTH_19    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.052   13.4   0.0        0.1   12.4   0.0    1.4  1  HTH_23    Homeodomain-like domain
       0.11   12.5   0.1       0.33   10.9   0.1    1.8  1  HTH_37    Helix-turn-helix domain
        4.6    6.3   9.8        6.4    5.9   9.8    1.1  1  SOG2      RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> DUF4115  Domain of unknown function (DUF4115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   2.3e-26   5.1e-23       1      74 []     249     323 ..     249     323 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 2.3e-26
     DUF4115   1 lvltatadsWveVrdadGkvlfegtlkaGetkevsgkppltltiGnagavevsvnGkpvdllgy.argnvarltl 74 
                 lv++++ad+W+eV+da+Gk+lf+g+ ++G  +++sg++p++l+iG+++av++++ Gkpvdl+ + + ++varltl
  CTQ29330.1 249 LVMNFSADCWLEVSDATGKKLFSGLQRKGGNLNLSGQAPYKLKIGAPAAVQIQYLGKPVDLSRFiRTNQVARLTL 323
                 799*************************************************************88888****97 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.3   7.4e-18   1.7e-14       1      62 []      18      79 ..      18      79 .. 0.92

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 7.4e-18
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT--TTSS-HHHHHHHHHHHHHHTT--HHHH CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEeddfdalpepvylrgylrnYArlLgldpeev 62
                rLr aRe++gls ++va+++ +++++++ +E+d+  a  + ++lrgy+r+YArl+ + ++e+
  CTQ29330.1 18 RLRHAREQLGLSQQAVAERLCLKVSTVRDIEDDKAPADLASTFLRGYIRSYARLVHIPEDEL 79
                7********************************765555688***************99875 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.4     1e-12   2.3e-09       3      61 ..      16      79 ..      15      81 .. 0.86
   2 ?   -3.8   0.1       7.6   1.7e+04      24      32 ..     125     133 ..     124     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1e-12
      HTH_31  3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspa......vlealaralgldpaer 61
                Ga+Lr++Re+ GLsq++vAerl++ +st++++E  + +   +a       ++++ar++  +++e+
  CTQ29330.1 16 GARLRHAREQLGLSQQAVAERLCLKVSTVRDIEDDKAP-ADLAstflrgYIRSYARLVHIPEDEL 79
                89********************************9997.64444445559999999999988886 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 7.6
      HTH_31  24 lgvsestls 32 
                 +g+s +++ 
  CTQ29330.1 125 IGLSGAWWW 133
                 689999996 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.3e-09     3e-06       1      33 [.      19      51 ..      19      57 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.3e-09
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTS CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGe 33
                l+ +R+qlglsq+ +Ae+l++++st+++iE ++
  CTQ29330.1 19 LRHAREQLGLSQQAVAERLCLKVSTVRDIEDDK 51
                7889*************************9665 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.1e-09   2.5e-06       1      62 [.      16      82 ..      16      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.1e-09
      HTH_19  1 GerLkeaReelgltqeelaerlgisrskisaiEngkkdvps.aell.....lkiaealgidleyllqg 62
                G rL+ aRe+lgl+q+++aerl    s  + iE +k   ++ a+++     +++a+++ i++++ll +
  CTQ29330.1 16 GARLRHAREQLGLSQQAVAERLCLKVSTVRDIEDDKA-PADlASTFlrgyiRSYARLVHIPEDELLPM 82
                89*******************************9954.3335555599999**************975 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.7e-05       0.1      12      37 ..      20      47 ..      19      56 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.7e-05
      HTH_23 12 lllae..GlsvreIAreLgvsrrTvyrw 37
                ++++e  Gls++++A++L    +Tv+ +
  CTQ29330.1 20 RHAREqlGLSQQAVAERLCLKVSTVRDI 47
                5566669******************987 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00015      0.33      22      54 ..      18      50 ..       9      53 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
                HHHHHHHHCT--HHHHHHHHT--HHHHHHHHTT CS
      HTH_37 22 aiaeliekrelsqseaaqllgiaqPkvsrllrg 54
                +++  +e+++lsq+ +a++l+ + + v ++++ 
  CTQ29330.1 18 RLRHAREQLGLSQQAVAERLCLKVSTVRDIEDD 50
                578899*********************999875 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   9.8    0.0029       6.4     262     358 ..     144     244 ..     127     274 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0029
        SOG2 262 qsetsersasssgvqssasstPlgegstspp.galsrqslsttgststltsssksrsssrsnt.nasastprslattpappasaesf.astlt.asrin 356
                 +++++++sa+ +g + +++++Pl ++++++p ++++++s+ t ++++++ts + ++ + +++   +s+ +     ttpa+pa++ +   +t++ ++++ 
  CTQ29330.1 144 STMADQSSAELNGGDANSQNVPLDTSAPAAPtADSAANSAPTDTASAPTTSAPAQTPADNNAVvAPSQANVDTAGTTPAAPATTPASpLPTDQaNVTTP 242
                 345566666665688888889999999999988888888888888888888888888555544555555555555555544444443433333333333 PP

        SOG2 357 tl 358
                 + 
  CTQ29330.1 243 AA 244
                 32 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       963  (0.0537119); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 2662.74
//
Query:       CTQ29331.1  [L=388]
Description: putative Fe-S containing enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-16   60.0   0.1    9.3e-16   58.7   0.1    1.7  1  Radical_SAM     Radical SAM superfamily
     0.0011   19.1   0.0     0.0023   18.1   0.0    1.5  1  Fer4_14         4Fe-4S single cluster domain
  ------ inclusion threshold ------
       0.16   11.7   1.0        1.9    8.2   0.1    2.4  2  Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.1   1.6e-19   9.3e-16       2     159 ..     124     295 ..     123     303 .. 0.83

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 1.6e-19
                  EEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHH..........HTTSEEEEEESSTGGGSTTHHHHHHHHHHTC....CCTEEEEEEEC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpetvrregrgrslsveeileevkelka..........ekgvkevilgggepllypdfvellerlakla....vpgiritvetn 85 
                  + + gC+l C+fC++ +     g  r+l v ei+ +v ++++          ++ +++v++g+gepll+ + v+ + +++  +     +++r+t++t+
   CTQ29331.1 124 SSQVGCALECKFCSTAQ----QGFNRNLRVSEIIGQVWRAAKivgavkttgvRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDfgfgLSKRRVTLSTS 217
                  6789************7....78888888888888887775345666666545548888888************************************ PP

                  SSCHGHHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHT...CTSHHHHHHHHHHHHHHTTSET...EEEEEEEBTTTSH..HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxx..xx RF
  Radical_SAM  86 gtlpdeeklerllelgvdrvslgleaaddekvlklmn...rghtfeevlealeklreagikr...vvdrivglpGend..ee 159
                  g++p    l++l ++    ++++l+a++d  +++ +    +++++e +l++++ + ++   +   v++ +v+l  +nd  e+
   CTQ29331.1 218 GVVP---ALDKLGDMIDVALAISLHAPNDT-IRDEIVpinKKYNIETFLNSVRGYISKSNANqgrVTIEYVMLDHVNDgtEH 295
                  ****...999999999*************9.66654444499***********998886555788************94444 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.8e-07    0.0023       7      92 ..     128     221 ..     124     240 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.8e-07
     Fer4_14   7 gCnlsCkgCd.nketwkselgkpqteell...eqilkdlkkseik.iqglvltG.GePLhyenkkellklvkrlkeey....pekkiwletngtle 92 
                 gC l+Ck+C   ++ ++ +l   +   ++    +i+  +k + ++ i ++v++G GePL   n +++++ ++ + + +     + +++l t+g++ 
  CTQ29331.1 128 GCALECKFCStAQQGFNRNLRVSEIIGQVwraAKIVGAVKTTGVRpITNVVMMGmGEPL--LNLNNVVPAMEIMLDDFgfglSKRRVTLSTSGVVP 221
                 9********9645556665444433333311134444667666652467**********..89999999999888888666566889999998865 PP

>> Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00031       1.9      11      43 ..      25      62 ..      16      70 .. 0.66
   2 ?    1.5   0.1     0.039   2.3e+02      13      24 ..      70      81 ..      66     106 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00031
  Sirohm_synth_C 11 vgkLRkkLReiapdqeegpkR....MkWmsk.vcdsws 43
                    ++  R+++Re  ++  e+p R    MkWm + +cd ++
      CTQ29331.1 25 LDLNRQQMREFFKNMGEKPFRadqvMKWMYHyCCDDFD 62
                    5555888888888776666644444****763788774 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.039
  Sirohm_synth_C 13 kLRkkLReiapd 24
                     LR+kL+e+a+ 
      CTQ29331.1 70 VLRSKLKEVAEI 81
                    59******8863 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2864.85
//
Query:       CTQ29332.1  [L=143]
Description: nucleoside diphosphate kinase (NDK) (NDP kinase) (Nucleoside-2-P kinase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-54  181.9   0.0    5.9e-54  181.7   0.0    1.0  1  NDK       Nucleoside diphosphate kinase


Domain annotation for each model (and alignments):
>> NDK  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.7   0.0   3.3e-58   5.9e-54       1     134 [.       4     137 ..       4     138 .. 0.99

  Alignments for each domain:
  == domain 1  score: 181.7 bits;  conditional E-value: 3.3e-58
                 EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEECE-HHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--SSTTTSSTTS CS
         NDK   1 ertlvliKPdavkrgligeiisrleekglkivalkmlrlteeqaeehYaehkgkpffeelvefmtsgpvvalvlegedaiekvreliGatnpaeaapgt 99 
                 ert+++iKP+av++++ig+i sr+e++g+kiv++kml+lt eqa+ +Yaeh+g+pff+ lvefmtsgp+v+ vlege+a+++ r+l+Gatnpa+a +gt
  CTQ29332.1   4 ERTFSIIKPNAVAKNVIGSIFSRFEAAGFKIVGTKMLHLTVEQARGFYAEHEGRPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGT 102
                 89************************************************************************************************* PP

                 HHHHH-SSSTT-SEEE-SSHHHHHHHHHHHSTGGG CS
         NDK 100 iRadfgvslgeNlvHgSdseesaereiklfFkeee 134
                 +Rad++ s +eN  HgSds esa+rei++fF e e
  CTQ29332.1 103 LRADYADSFTENGTHGSDSVESAAREIAFFFAEGE 137
                 *******************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1243.56
//
Query:       CTQ29333.1  [L=774]
Description: fused transglycosylase; transpeptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-49  167.1   0.0    3.5e-49  166.7   0.0    1.2  1  Transgly        Transglycosylase
    8.6e-18   64.2   0.1    2.6e-17   62.7   0.1    1.9  1  BiPBP_C         Penicillin-Binding Protein C-terminus Family
      2e-11   43.7   0.0    1.5e-10   40.7   0.0    1.9  1  Transpeptidase  Penicillin binding protein transpeptidase dom
  ------ inclusion threshold ------
      0.037   13.8   0.0      0.095   12.5   0.0    1.7  1  DUF2914         Protein of unknown function (DUF2914)
       0.13   12.1   0.3       0.22   11.3   0.3    1.2  1  VirB8           VirB8 protein


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.7   0.0   9.8e-53   3.5e-49      10     177 ..      60     226 ..      49     227 .. 0.95

  Alignments for each domain:
  == domain 1  score: 166.7 bits;  conditional E-value: 9.8e-53
    Transgly  10 eeenrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlflseertlerKlkeavlAlklekklsKdeIL 108
                 +   r  v+l++++p   +a++  EDr F++h+Gv++ +++rA++++l+sg++ +GgST+t+Q++++l   + rt+  Kl++++ Al+le++lsK++IL
  CTQ29333.1  60 QGVWRYPVTLADVSPRYLQALIQYEDRWFWRHPGVNPFAVLRAAWQDLTSGRVISGGSTLTMQVARLL-DPHPRTFGGKLRQLWRALQLEWHLSKSDIL 157
                 5678999***********************************************************95.5567************************** PP

    Transgly 109 eaYlNsvylgrevyGieaAarayFgkdakdLtlaeaalLagllkaPsrynplenpeeakkrrkvvlerm 177
                 ++YlN++++g+ + Gi+aA++ay gk++++L+  eaalLa+l++aPsr++p + p++a++ r+ vl rm
  CTQ29333.1 158 TLYLNRAPFGGTLQGIGAASWAYLGKSPARLSYGEAALLAVLPQAPSRLRPDRWPQRAQAARDKVLTRM 226
                 *******************************************************************99 PP

>> BiPBP_C  Penicillin-Binding Protein C-terminus Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.1   7.1e-21   2.6e-17       5      88 ..     689     770 ..     685     771 .. 0.92

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 7.1e-21
     BiPBP_C   5 assaasplrIafPadGailaldpdipkrqrlqlkarggeaplrWlldgeplaetkrgrelawqp.epGrhrLtvvDaaGrvddvr 88 
                 ++++++pl + +++dGa++++ p++ +r  l+l+ +gge++ +W+++gepl   ++g+++++++ +pG+++L v+D+aG+++  +
  CTQ29333.1 689 QTQDTAPLVLSGIRDGAVIKRLPGE-ARVMLPLQTSGGEGRRWWFINGEPL--EAAGARTTLMLdKPGEWQLVVMDEAGQTAAAS 770
                 67899******************98.9************************..788899999999***************99765 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   4.3e-14   1.5e-10       2     252 ..     302     518 ..     301     537 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 4.3e-14
                     EEEEEETTT-BEEEEEEESE-TTTHHCCTCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS.ECTCCCC-SSSSEEE CS
  Transpeptidase   2 aavvldaktgevlamaskpsydpnakvgkneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqsikdweqdnkgsegit 96 
                     a+vv+d  + +v  ++++ +   + + g       ++v+ + +PGS+ K+++ a+a+++g+i p + l+d + ++ +  + +++++    +++++
      CTQ29333.1 302 AMVVVDHTDMKVRGWVGSADITDDSRFG-----HIDMVSAVRSPGSVLKPFIYAMAMDEGLIHPASLLQDVPRRFSD-YRPGNFDSGF--HGPVS 388
                     5789999999999999998877777777.....8999***********************************99875.4478888886..899** PP

                     HHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSH...HHHHHHHHTTTSBB-HHHHHHHHHHHHTTTEEE--BSE CS
  Transpeptidase  97 lrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkw...legatisfgiGltvtplqlaqayaaiangGklvkPhlv 188
                      +eal  S n   v++ ++ g++++   l++ gl       lp   aG  +++    l+ga         +    ++ ay+a+a+ Gk  +++l 
      CTQ29333.1 389 ASEALVRSLNLPAVQVLEAYGPKRFAANLRNAGLPL----TLP---AG-AEPNLsliLGGA--------GARLEDIVAAYSAFARHGKAARLRLK 467
                     ********************************9988....444...45.233331334444........78888999999999999999999998 PP

                     EEEEECTTEEEESS-EEEEE-S-HHHHHHHHHHHHHHHHCT.TTTGCGTCTTS--EEEEEEEEEC CS
  Transpeptidase 189 kaivdpdgvrkvkpkelnklpisketaekvkeglkgvvsrg.sgtataavegykvagKTGTAeva 252
                                  ++   +  +s+ +a+ v+++l+g+++    ++     + +++a KTGT   +
      CTQ29333.1 468 -----------PSDPLTERALMSPGAAWIVRRILAGEAQPVpDAS---LPQAVPLAWKTGTSYGY 518
                     ...........2446667778999999999999999999872222...33367999999997665 PP

>> DUF2914  Protein of unknown function (DUF2914)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.7e-05     0.095      33      55 ..     744     766 ..     741     772 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
     DUF2914  33 skqllpeseGkWrVeVeteagql 55 
                 +++l+ +++G+W+ +V++eagq+
  CTQ29333.1 744 RTTLMLDKPGEWQLVVMDEAGQT 766
                 5788888**************97 PP

>> VirB8  VirB8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   6.2e-05      0.22      14      59 ..       6      50 ..       3      68 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.2e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX.X CS
       VirB8 14 rvqarnwrlvafvslliavlavgavvlllplktvePyvvevdkttG 59
                rv++r  +l+af++ll  +++++  ++ lpl  v+P  v v  + G
  CTQ29333.1  6 RVKRRWRWLAAFIFLLWLAVLAADRLWPLPLHDVTPARVVVAED-G 50
                88999999****************************98888777.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5569.12
//
Query:       CTQ29334.1  [L=1649]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-49  165.2   0.2    7.7e-49  164.1   0.2    1.6  1  bMG1             Bacterial Alpha-2-macroglobulin MG1 domain
    3.9e-44  150.1   0.6    7.3e-42  142.7   0.0    3.7  3  bMG5             Bacterial Alpha-2-macroglobulin MG5 domain
    5.9e-31  106.9   4.3    8.7e-31  106.4   2.1    2.5  2  bMG6             Bacterial macroglobulin domain 6
    1.4e-29  102.9   0.0    3.8e-29  101.5   0.0    1.8  1  bMG10            Bacterial Alpha-2-macroglobulin MG10 domain
    9.3e-23   80.5   0.0    5.9e-20   71.5   0.0    3.8  2  MG2              MG2 domain
    7.2e-22   77.4   0.1    7.1e-21   74.2   0.1    2.7  2  bMG3             Bacterial alpha-2-macroglobulin MG3 domain
    3.7e-15   56.5   0.0    1.1e-14   55.0   0.0    1.9  1  A2M_BRD          Alpha-2-macroglobulin bait region domain
    2.7e-08   33.5   0.0    7.1e-08   32.2   0.0    1.7  1  A2M              Alpha-2-macroglobulin family
    3.4e-08   32.9   0.0    6.7e-08   31.9   0.0    1.4  1  TED_complement   A-macroglobulin TED domain
     0.0015   18.5   0.1        0.1   12.7   0.0    3.4  2  Big_1            Bacterial Ig-like domain (group 1)
     0.0047   17.2   0.0       0.82   10.0   0.0    4.3  3  CarboxypepD_reg  Carboxypeptidase regulatory-like domain
  ------ inclusion threshold ------
      0.013   15.6   0.0        1.2    9.4   0.0    2.8  2  MG4              Macroglobulin domain MG4
        0.1   11.7   0.1        1.3    8.1   0.0    2.2  2  DUF1513          Protein of unknown function (DUF1513)
       0.14   12.1   0.8        2.2    8.3   0.1    3.3  3  SPDY             Domain of unknown function (DUF317)


Domain annotation for each model (and alignments):
>> bMG1  Bacterial Alpha-2-macroglobulin MG1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.1   0.2     6e-52   7.7e-49       1     105 []      56     160 ..      56     160 .. 0.99

  Alignments for each domain:
  == domain 1  score: 164.1 bits;  conditional E-value: 6e-52
        bMG1   1 akrsagkeltvlDvsevqldGastlvvtfsvpldpeqkfaeklhlvDkksGkvdGaWeLsdnlkelrlrhlePkrklvltvdaglkavngatlekelek 99 
                 a++s+gk+lt+lD+sevqldGa+tlv+tfsvpl+p+q+f++++hlvDkksGkvdGaWeL++nlkelrlrhlePkr+l+++vd++l+a+n+atl+k +ek
  CTQ29334.1  56 AEKSQGKALTLLDASEVQLDGAATLVLTFSVPLQPDQDFSRSVHLVDKKSGKVDGAWELAPNLKELRLRHLEPKRELIVSVDPTLTALNKATLDKPFEK 154
                 799************************************************************************************************ PP

        bMG1 100 kletrd 105
                 +l+trd
  CTQ29334.1 155 TLTTRD 160
                 *****8 PP

>> bMG5  Bacterial Alpha-2-macroglobulin MG5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       4.7     6e+03      70      91 ..     324     345 ..     315     350 .. 0.77
   2 !  142.7   0.0   5.7e-45   7.3e-42       1     127 []     482     607 ..     482     607 .. 1.00
   3 ?    3.2   0.0     0.086   1.1e+02      80     112 ..     851     883 ..     832     889 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.7
        bMG5  70 rteeledltldaeGkaelevel 91 
                 + ++l +++ d++G+++l+++ 
  CTQ29334.1 324 KGQTLAEAKSDSQGHVTLQTDK 345
                 5567789999999999998855 PP

  == domain 2  score: 142.7 bits;  conditional E-value: 5.7e-45
        bMG5   1 ERidlelslkekplapgeeveldvegrYLyGAPAaglrlegelllraarealeklpgyefGradeeeekrteeledltldaeGkaelevelpelekaks 99 
                 ER++l+l+ +++p+ap+++v++ v+g+YLyGAPA+g++l+g+l+lr+ r+a+++lpg++fG+ +ee+ +r+ ++ +ltld++G+ e+++  +++++++s
  CTQ29334.1 482 ERMALNLTPQAAPVAPDADVTFGVSGAYLYGAPASGNQLQGKLFLRPLRDAVAALPGFQFGDIAEENLSRSLDEVQLTLDEKGHGEVTT-SSQWQDSHS 579
                 9***************************************************************************************9.9******** PP

        bMG5 100 pleaevtvsllEsgGRpVeRsleravwP 127
                 pl++ +++sllEsgGRpV+R++++++wP
  CTQ29334.1 580 PLQVVLQASLLESGGRPVTRTVKQPIWP 607
                 ***************************9 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.086
        bMG5  80 daeGkaelevelpelekakspleaevtvsllEs 112
                 d++ +++l++e+p+  ++++pl+++v +s++E+
  CTQ29334.1 851 DENRRLTLALEAPDKMRPNQPLTVKVKASVKEG 883
                 667788999999999***************996 PP

>> bMG6  Bacterial macroglobulin domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.6   3.4e+03      23      42 ..     406     425 ..     394     429 .. 0.83
   2 !  106.4   2.1   6.8e-34   8.7e-31       1     113 []     613     738 ..     613     738 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.6
        bMG6  23 avdadgkkvatkelkvklyr 42 
                 + d+dgk++a++ +k ++++
  CTQ29334.1 406 LRDSDGKPLAEQPVKLEVVQ 425
                 5689***********99987 PP

  == domain 2  score: 106.4 bits;  conditional E-value: 6.8e-34
        bMG6   1 Girplfd..............dgeveegseaefeivavdadgkkvatkelkvklyreerdyqWeyssdggwryestekdkpvasgtvdlsaegkaklsl 85 
                 Girp+f               +  v+e+s+a+f+iv++d +g+k a ++l+v+l+re+rdy+W++s+++gw+++ ++kd +  ++++dl+a++ +k+s+
  CTQ29334.1 613 GIRPQFTlkdvydyrtdttvkQPVVDENSNAAFDIVYADVKGEKKAISGLQVRLIRERRDYYWNWSDSEGWQSQFDQKDLQEGEESLDLQAGQIGKVSF 711
                 89999999999999999999999**************************************************************************** PP

        bMG6  86 pvdwGrYrleVedeesgaatsvrfyagW 113
                 pv+wG+YrleV+ +++ +++svrf+ag+
  CTQ29334.1 712 PVEWGSYRLEVKGPDD-VVSSVRFWAGY 738
                 ***************9.**********9 PP

>> bMG10  Bacterial Alpha-2-macroglobulin MG10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.0     3e-32   3.8e-29       3     130 .]    1502    1634 ..    1501    1634 .. 0.97

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 3e-32
       bMG10    3 sveReyeklegkevsksdaklkvGdkvrvrltvttprdleyvaledplPAGlepvnpslgtesesaeeye.......wleeltefsyreirddrvvf 92  
                   +eR++++ +g+++s s  +l++G++v+v+l+vt++r + + +++d lPAGle++n++l+++s+s +e+        +++++ ++++ e+rddr+v+
  CTQ29334.1 1502 GIERTIFDTQGQQKSLS--SLRSGELVLVKLEVTAKRNVPDALVVDLLPAGLELENQNLANSSASLQENGdavqnllNQMQQADIQHIEFRDDRFVA 1596
                  79*************99..*******************************************9999888899*****99999*************** PP

       bMG10   93 fadylpkgtytfeylvravtpGtfsvppakaeemYaPE 130 
                  ++   + +  t+ yl+ravtpGt++vp  ++e+mYaP+
  CTQ29334.1 1597 AVAVNEGQPVTLVYLARAVTPGTYQVPQPQVESMYAPQ 1634
                  *************************************6 PP

>> MG2  MG2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   4.6e-23   5.9e-20       2      96 .]     385     476 ..     384     476 .. 0.93
   2 ?    4.3   0.0     0.044        56       4      22 ..     757     775 ..     754     787 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 4.6e-23
                 EEEEES-SEE-TT-EEEEEEEEESTTCSB---EEEEEEEE-TTSSEEEEEEEEE-CTTEEEEEEE--TT--SEEEEEEEEECSTTT-EEEEEEEE CS
         MG2   2 afvytDRglYrPgetVslkallrdetlqglaklplkltirdpdgkevkelplatdetggaesefalpeaaklGeysvelsadsaeeslssgsfrV 96 
                 +f++  R+lYrPgetV l+allrd+++++la++p+kl++++pdg+++++    +  +g+++++++l ++a +G +++++  +  +++ ++++f V
  CTQ29334.1 385 FFMFGPRDLYRPGETVILNALLRDSDGKPLAEQPVKLEVVQPDGQVIRSVM-SKPVNGLYQFTYPLDSGAATGMWHIRA--SAGDNQPREWDFHV 476
                 799********************************************9988.99999**********************..77777777777776 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.044
                 EEES-SEE-TT-EEEEEEE CS
         MG2   4 vytDRglYrPgetVslkal 22 
                 + +D++ Y+Pg+t++l + 
  CTQ29334.1 757 MKLDKPSYKPGDTIRLHIA 775
                 668***********98775 PP

>> bMG3  Bacterial alpha-2-macroglobulin MG3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.1   5.5e-24   7.1e-21       1     101 [.     286     378 ..     286     380 .. 0.97
   2 ?   -1.2   0.0       1.6   2.1e+03      24      62 ..     410     451 ..     398     468 .. 0.78

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 5.5e-24
        bMG3   1 vtdlGlhaklgrdkllvwvtsLdsgkPvagaeVrlldkkgevlaegtTDaqGvarfaallargkegaapylvsArkdedlaflkldwergldlsrfdvp 99 
                 ++d+G++a+++ ++l+v+++sL++g + +g+eV+ll++kg++lae+++D+qG+++++++       ++++l++Ark++++++l+l + ++ldl++f ++
  CTQ29334.1 286 LSDIGVSAHRYHNRLDVFTQSLENGAAQSGIEVQLLNAKGQTLAEAKSDSQGHVTLQTD-------KEAALLLARKEGQTTLLDL-KLPALDLAEFSIA 376
                 69*******************************************************99.......899****************.6***********9 PP

        bMG3 100 gr 101
                 g 
  CTQ29334.1 377 GA 378
                 86 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.6
        bMG3  24 sgkPvag..aeVrlldkkgevlaegtTDa.qGvarfaallar 62 
                 +gkP+a+  +++++++ +g+v+ +  +   +G+++f+ +l++
  CTQ29334.1 410 DGKPLAEqpVKLEVVQPDGQVIRSVMSKPvNGLYQFTYPLDS 451
                 78888765589999*******999887643888888888766 PP

>> A2M_BRD  Alpha-2-macroglobulin bait region domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   8.3e-18   1.1e-14       2     140 .]     756     903 ..     755     903 .. 0.91

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 8.3e-18
                 EEEESSSS--TTSEEEEEEE-SS-......EE-TT-....BSS----.-.-S...S....-EEEEEE--TT---.--EEEEEE..E-.......-CEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.......xxxxx RF
     A2M_BRD   2 qispdkeeykvGetakltvkstfa......tverdstlylvlsrgni.vssgekveeidsstsfsfpvtadmaP.narvvvyyirrd.......gevva 85 
                 ++++dk +yk+G+t++l++ ++ a       + +++     l+ ++i v      e      ++s+pv + +     ++ ++++r++       +++++
  CTQ29334.1 756 TMKLDKPSYKPGDTIRLHIAAPAAgkgyamVESSEG----PLWWQEIdV-PA---E----GMDLSIPVDKTWNRhDLYLSTLVVRPGdksrsatPKRAV 842
                 6899*******************9999987777777....899999988.44...3....469**********99****999999999*********** PP

                 EEEE----.-GGGB-EEEEEEE...-SSSEEEEEEE..E.......T-EEEEEEEEHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxx RF
     A2M_BRD  86 dsvqlpvekdfenklsvslesynetrPgeevtlkvkasp.......gslvalaaVDksvlll 140
                 ++++lp   d++++l+++le+ +++rP++ +t+kvkas+       +  v l+aVD +vl++
  CTQ29334.1 843 GLLHLPLG-DENRRLTLALEAPDKMRPNQPLTVKVKASVkegeapkQVNVLLSAVDSGVLNI 903
                 ********.9*********65899************9999999999*************975 PP

>> A2M  Alpha-2-macroglobulin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   5.5e-11   7.1e-08       8      92 .]     973    1054 ..     968    1054 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 5.5e-11
                  EEC...CEEEEEEEEESSSCEEEEEEEEEETTTEEEEEEEEEEEE--SEEEEEE--SEEETTSEEEEEEEEEE-SSS-EEEEEEE CS
         A2M    8 lvtdasgkaslsftlPDsiTtWrvtavalsedkglgvaeplevrvfkpffvdlnlPysvrrgeqveikavvfNyldkeikvrvel 92  
                  +++ ++g+ ++++ + D   ++rv+a a ++d  +g +e  +v+v  p++ +ln P++++ g+++++   ++N +d++++ +v+l
  CTQ29334.1  973 VLN-DQGEGTVTLPIGDFNGELRVMAQAWTAD-DFGSSED-KVVVAAPVIAELNTPRFLASGDTTRLALDLSNLTDQPQTLQVHL 1054
                  444.89**************************.*******.****************************************9986 PP

>> TED_complement  A-macroglobulin TED domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   5.2e-11   6.7e-08      19     131 ..    1174    1286 ..    1163    1313 .. 0.88

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 5.2e-11
                      HHHHSSS--SSHHHHGGGTHHHHHHHHHHHHTTGTTTSHHHHHHHHHHHHHHHHHTCBETTSEBBSSS..SS-BEHHHHHHHHHHHHHCHHHS CS
  TED_complement   19 lesLlrlPygcgEqnmvllapnvyvlkYLekteqltkeikkkaleklekgyqrqlsykkadgsysafgkdssegstWLtAfvlkvlaqakefi 111 
                      +++L   Pygc Eq+ + l p +y++    k+  ++ ++ +k    +  g  r l+ + ++g+++++ ++  +   WLtA+ +  l +a+e+ 
      CTQ29334.1 1174 IRELKAYPYGCLEQTASGLFPSLYTSAAQLKALGISGDSDEKRRAAIDVGISRLLQMQLENGGFALWDRE-GPEEYWLTAYAMDFLVRASEQG 1265
                      6789999******************998888888999999****************************66.99***************99886 PP

                      T.--HHHHHHHHHHHHTTB-T CS
  TED_complement  112 f.ideeeiseslewLlseQke 131 
                      + ++ ++i++  e Ll+  +e
      CTQ29334.1 1266 YsVPVNAINKGNERLLRYLQE 1286
                      558999998887777765555 PP

>> Big_1  Bacterial Ig-like domain (group 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.25   3.2e+02      17      50 ..     309     341 ..     308     346 .. 0.67
   2 !   12.7   0.0   7.8e-05       0.1       5      36 ..     398     431 ..     397     447 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.25
       Big_1  17 ngnpvagatVtfsvsggalsassgtTdanGkatv 50 
                 ng + +g++V +   +g++  +++++d++G++t 
  CTQ29334.1 309 NGAAQSGIEVQLLNAKGQT-LAEAKSDSQGHVTL 341
                 5666677777766666666.45777888887775 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 7.8e-05
       Big_1   5 dtntltatvkDangnpvagatVtfsvsg..gals 36 
                 +t+ l+a ++D++g+p+a ++V+++v +  g+++
  CTQ29334.1 398 ETVILNALLRDSDGKPLAEQPVKLEVVQpdGQVI 431
                 5899********************9988766555 PP

>> CarboxypepD_reg  Carboxypeptidase regulatory-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00064      0.82       9      61 ..     308     359 ..     304     367 .. 0.89
   2 ?    1.2   0.0      0.36   4.6e+02       6      43 ..     406     446 ..     402     489 .. 0.68
   3 ?   -2.1   0.0       3.8   4.8e+03      13      48 ..     958     991 ..     954    1023 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00064
  CarboxypepD_reg   9 asgapiagatVtvtnadtgtvastttdadGafrlrglppgtysvtvsapGyat 61 
                      ++ga+ +g +V + na ++t a++++d++G+ +l+        + ++++G  t
       CTQ29334.1 308 ENGAAQSGIEVQLLNAKGQTLAEAKSDSQGHVTLQ-TDKEAALLLARKEGQTT 359
                      489999***************************97.88888999999988776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.36
  CarboxypepD_reg   6 VtdasgapiagatVt..vtnadtgtvastttd.adGafrlr 43 
                       +d++g+p+a+  V   v + d+++ +s+ +   +G ++++
       CTQ29334.1 406 LRDSDGKPLAEQPVKleVVQPDGQVIRSVMSKpVNGLYQFT 446
                      589******98777711455677889999998468999887 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.8
  CarboxypepD_reg  13 piagatVtvtnadtgtvastttdadGafrlrglpp....g 48 
                      p+ ++t++++     + + ++ +++G+ +++ lp     g
       CTQ29334.1 958 PVNHVTIVAQ-----QAQPVVLNDQGEGTVT-LPIgdfnG 991
                      6777777777.....5555555555555554.55533333 PP

>> MG4  Macroglobulin domain MG4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0009       1.2      10      62 ..     394     447 ..     391     469 .. 0.76
   2 ?    2.7   0.0      0.11   1.4e+02       7      41 ..     863     897 ..     859     909 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0009
         MG4  10 fKpGlPfsikVlvkdpdgspaknvpVkiealkseteekeslt.tdedGtakfsi 62 
                 ++pG    +  l+ d+dg+p+++ pVk+e+++ + +  +s+  +  +G+ +f++
  CTQ29334.1 394 YRPGETVILNALLRDSDGKPLAEQPVKLEVVQPDGQVIRSVMsKPVNGLYQFTY 447
                 8999999999********************882222222222144577777776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.11
         MG4   7 pkffKpGlPfsikVlvkdpdgspaknvpVkiealk 41 
                 p   +p  P ++kV+ + ++g+  k+v V ++a++
  CTQ29334.1 863 PDKMRPNQPLTVKVKASVKEGEAPKQVNVLLSAVD 897
                 66689************************999966 PP

>> DUF1513  Protein of unknown function (DUF1513)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00098       1.3     139     173 ..      97     131 ..      86     147 .. 0.87
   2 ?    0.8   0.0      0.16   2.1e+02     136     199 ..    1558    1618 ..    1550    1632 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00098
     DUF1513 139 slvyLdaetGalleqvelaedlnrlSiRHlavadd 173
                 s+ ++d+++G++ + +ela++l++l +RHl  +++
  CTQ29334.1  97 SVHLVDKKSGKVDGAWELAPNLKELRLRHLEPKRE 131
                 78889*************************87765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.16
     DUF1513  136 mqpslvyLdaetGalleqvelaedlnrlSiRHlavaddgtvlvaeqyegeakeaapllalhrrg 199 
                  +  s + L +e+G+ +++  l +++++  i H+  +dd  v++ +  eg++   + l   +++g
  CTQ29334.1 1558 LANSSASL-QENGDAVQN--LLNQMQQADIQHIEFRDDRFVAAVAVNEGQPVTLVYLARAVTPG 1618
                  55566778.899999999..6789**************99998888888765555554444444 PP

>> SPDY  Domain of unknown function (DUF317)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0017       2.2      16      45 ..     451     481 ..     442     489 .. 0.78
   2 ?   -1.6   0.0       2.1   2.6e+03      14      30 ..    1106    1124 ..    1101    1128 .. 0.71
   3 ?   -1.1   0.0       1.5   1.9e+03      38      53 ..    1532    1547 ..    1531    1549 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0017
        SPDY  16 edaepaaWtiearp.aadgpaWhatFtaatP 45 
                 ++a  ++W+i+a+  ++++++W+ +  +  P
  CTQ29334.1 451 SGAATGMWHIRASAgDNQPREWDFHVEDFMP 481
                 334499****************988766666 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.1
        SPDY   14 ededae.paaWtiearp.a 30  
                  + ++a+ +  W+i +rp +
  CTQ29334.1 1106 GETFAPlQKQWKIGVRPaY 1124
                  4455558999******942 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.5
        SPDY   38 atFtaatPaelvaaft 53  
                  +t+ +++P++lv +++
  CTQ29334.1 1532 VTAKRNVPDALVVDLL 1547
                  6899********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.46
# Mc/sec: 10878.03
//
Query:       CTQ29335.1  [L=285]
Description: 3-mercaptopyruvate sulfurtransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-32  111.7   0.0    6.3e-17   62.0   0.0    2.2  2  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   3.5e-21   6.3e-17       2     106 ..       9     129 ..       8     130 .. 0.88
   2 !   47.8   0.0   9.6e-17   1.7e-12      11     105 ..     167     271 ..     158     273 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 3.5e-21
   Rhodanese   2 akelkellekgkvallDvRppee...........YekghIpgAvnv...skdtlsrakkseapllelpeellel.gidnkktvvvycdgggr.aaaaaa 84 
                 a++l+e++++++++++D+R +++           Y +gh+p+A+ +   +    + + +++ p +e ++ ++++ g+  +k++vvy++g+   a +a++
  CTQ29335.1   9 ADWLAEHIDDPEIQIIDARMAPAgqealrdmaaeYRAGHVPNALFFdieALSDHTSPLPHMMPRAEAFAVAMRElGVCSDKHLVVYDEGNLFsAPRAWW 107
                 79*****************555555667777777************9987777888888888999999988888******************99999** PP

   Rhodanese  85 llkklGyknvsvldGGfkawke 106
                 +l+  G+++vs+l GG+++w +
  CTQ29335.1 108 MLRTFGVEKVSILAGGLEGWRR 129
                 ******888***********86 PP

  == domain 2  score: 47.8 bits;  conditional E-value: 9.6e-17
   Rhodanese  11 kgkvallDvRppeeY...........ekghIpgAvnvskdtlsrakkseapllelpeellel....gidnkktvvvycdgggraaaaaallkklGykn. 93 
                 +g+++++D+Rp++++            +ghIpgA+nv     + ++ + +  l++++el +     g+d +++++  c +g  aa +  +l+ lG+ n 
  CTQ29335.1 167 EGSAQIVDARPAARFngqadeprpglRRGHIPGALNV-----PWTDLVINGELKTVDELNDIflrqGVDFERPIIASCGSGVTAAVVVLALTTLGV-Ng 259
                 55667*********999999999997889********.....555566777777777777777778*****************7777888889**5.55 PP

   Rhodanese  94 vsvldGGfkawk 105
                 v+++dG++++w 
  CTQ29335.1 260 VCLYDGSWSEWG 271
                 ***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2113.45
//
Query:       CTQ29336.1  [L=280]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   11.6   0.3        0.3   10.6   0.1    1.6  2  AAA_25    AAA domain


Domain annotation for each model (and alignments):
>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   1.7e-05       0.3      41      66 ..      82     111 ..      63     125 .. 0.79
   2 ?   -2.8   0.0      0.22   3.9e+03     130     130 ..     163     163 ..     147     195 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 1.7e-05
      AAA_25  41 apgtGKttlaldlalavatGkpwlg....p 66 
                 apg GK+tla  +++  a+ + w+g     
  CTQ29336.1  82 APGYGKSTLAAWMMHNPASSRRWPGevfrA 111
                 689**********************54432 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.22
      AAA_25 130 v 130
                  
  CTQ29336.1 163 A 163
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2239.33
//
Query:       CTQ29337.1  [L=258]
Description: rhodanase-like enzyme, sulfur transfer from thiosulfate [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-29  101.3   0.0    4.9e-29  100.6   0.0    1.4  1  SseB_C    SseB protein C-terminal domain
      1e-25   90.4   0.6    1.5e-25   89.8   0.6    1.3  1  SseB      SseB protein N-terminal domain


Domain annotation for each model (and alignments):
>> SseB_C  SseB protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   5.4e-33   4.9e-29       2     106 .]     137     243 ..     136     243 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 5.4e-33
      SseB_C   2 esgervrlgepaeepvdllaalseyfakrkeVkaAylalmrken.ekpslligvdlegdteklfkdagevaaeylpegepvdlvllde.eqpvakylle 98 
                 e+ge+++l+e+ae p++++++l+++f++ k+Vk+A+l+ + +++ ++ +llig+++egd+e++++  g+va+++lp +ep+d++++ e e+++++++++
  CTQ29337.1 137 EGGEALLLSEVAEPPAQMVDSLTTLFKTLKTVKRAFLCSIKERAdAPANLLIGIEAEGDIEAIIQTTGSVATDTLPGDEPIDICQVVEgEKGISHFMIA 235
                 6899****************************************9999****************************************888******** PP

      SseB_C  99 evkPFYqr 106
                 +++PFY++
  CTQ29337.1 236 HITPFYEK 243
                 ******98 PP

>> SseB  SseB protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.6   1.7e-29   1.5e-25       1     123 [.       8     119 ..       8     121 .. 0.96

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 1.7e-29
        SseB   1 LeealaalrakeadpealaafleallnarvlvpvvaeeeeeeglkvdkeaelalvtleaedgrralpvFTsaeelkkwaadarpvavvlpfaalaalle 99 
                 Le +l+++++   +p++++af+ all+a+v+vp  a +    g+++ +++ l+l+++e++dg +++p+FTs e+l ++a+ +++++v +p+++l+a+++
  CTQ29337.1   8 LETLLEKAAT---EPAHRPAFFSALLEATVWVPGRAAD----GEQIVEDSALELQHWEKDDGTSVIPFFTSLEAL-QQAVADEQAFVMMPARTLMAMTL 98 
                 79999**998...9**********************88....46788999*************************.*********************** PP

        SseB 100 gaeaeglvlNPgseyslvlpkeei 123
                 g   e+l+lNP+ + ++++++ ei
  CTQ29337.1  99 G---ESLFLNPKLPSGKEFTPREI 119
                 *...******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2213.44
//
Query:       CTQ29338.1  [L=428]
Description: aminopeptidase B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.9e-106  354.0   0.0   8.1e-106  353.8   0.0    1.0  1  Peptidase_M17  Cytosol aminopeptidase family, catalytic domai
    5.6e-31  106.4   0.3    1.1e-30  105.5   0.3    1.5  1  DUF3663        Peptidase


Domain annotation for each model (and alignments):
>> Peptidase_M17  Cytosol aminopeptidase family, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.8   0.0  9.1e-110  8.1e-106       2     310 ..     109     421 ..     108     422 .. 0.93

  Alignments for each domain:
  == domain 1  score: 353.8 bits;  conditional E-value: 9.1e-110
                    HHHHHHHS-TTTS-HHHHHHHHHH..HHTCCTEEEEEEEECHHHHHTT-HHHHHHHTTSSSS--EEEEEEEE-SSTTSEEEE..EEEEEEEEEE-T CS
  Peptidase_M17   2 lardlvntpaneltpeklaeeaee..lakeagkvevevldeeeleekgmgallaVgkgSeeepprlveleykgakekekkla..lVGKGitfDtGG 93 
                    ++rd +n+pa+el pe+la++a +     + +k+++++ ++e+l+e+g+ +l++Vg+gS e+pp l+ l+y+++++ke+++   lVGKGitfD+GG
     CTQ29338.1 109 WVRDTINAPAEELGPEQLAQRAVDllCGVAGEKISYRITKGEDLREQGYLGLHTVGRGS-ERPPVLLALDYNPTGDKEAPVYacLVGKGITFDSGG 203
                    579******************9997524444579*************************.67*************888887556************ PP

                    TSS--HHHHTTGGGGGHHHHHHHHHHHHHHHHT-SSEEEEEEEEEEE--STTSTTTTEEEE-TTS-EEEES-TTGCHHHHHHHHHHHHHGCT--SE CS
  Peptidase_M17  94 lslKpsasmeemkaDmgGAAavlgalkavaelklpvnvvavlplaeNmisgkavkpgdvitamnGktvevlnTDaEGRLvLADalayaeekekpdl 189
                    +s+K+sa m++mk+DmgGAA+++gal+ +   +l+++v+++l++a+N+isg+a+k gd+i+++nGktvev nTDaEGRLvLAD+l+ a+  +kp+l
     CTQ29338.1 204 YSIKQSAFMDSMKSDMGGAATITGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIIHYRNGKTVEVMNTDAEGRLVLADGLIDAS-AQKPEL 298
                    *************************9999999********************************************************5.78**** PP

                    EEEEE---THHHHHHTTTSEEEEES-HHHHHHHHHHHHHHS-EEEE----HHHGGGG--SSSSEESS-SSSST.HHHHHHHHHHTTSSE.CG.EEE CS
  Peptidase_M17 190 ivdvATLTgavvvalGkkaaglfsnddelaeelekageeagervwrlpleeeykkqlkskvaDlknvgkkrra.gaitAalFLkefvke.tp.WaH 282
                    i+d+ATLTga+++alG+++++lfs dd+la++l +++++++e +wrlpl+e +++ql s++aDl+n+g+     ga+tAa FL++fv++ ++ W+H
     CTQ29338.1 299 IIDAATLTGAAKTALGNDYHALFSFDDALANRLLASAQAENEAFWRLPLAEFHRNQLPSNFADLNNTGSAAYPaGASTAAGFLSHFVENyHQgWLH 394
                    **************************************************88*****************97667*************775336*** PP

                    EE-TTTTES.BTTB.S..EE--TTHHHH CS
  Peptidase_M17 283 lDiagtalkekealkkekgatGvgvrtL 310
                    +D+++t   +++ ++ ++gatG gvrt+
     CTQ29338.1 395 IDCSATYR-KSAVEQWSAGATGLGVRTI 421
                    *****974.334333348********98 PP

>> DUF3663  Peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.3   1.2e-34   1.1e-30       1      77 []       5      81 ..       5      81 .. 0.99

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 1.2e-34
                EEEEEESS---GGG-TT-SEEE-SS-EEEE--SS-HHHHHHHHHHHHHHTT--EEEE-SS---HHHHHHHHHHH--T CS
     DUF3663  1 msvtLseqaaaaaWgekAllsfneegatihllekdelraiqrAaRkldgqgikeveLaGegWdlesqWaFaqGfrta 77
                m++tLs+q+a+ +WgekA+ s+n++g+ +hl++kd+l  iqrAaRk+dg+gik+v+L+GegW++++ WaF+ G++++
  CTQ29338.1  5 MKITLSTQPADGRWGEKATWSINNDGIALHLNGKDDLGLIQRAARKIDGMGIKHVALSGEGWNTDRAWAFWAGYKGP 81
                9*************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 3696.06
//
Query:       CTQ29339.1  [L=66]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-32  111.9   1.9    1.7e-32  111.8   1.9    1.0  1  Fe-S_assembly  Iron-sulphur cluster assembly


Domain annotation for each model (and alignments):
>> Fe-S_assembly  Iron-sulphur cluster assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   1.9   9.4e-37   1.7e-32       1      64 []       3      66 .]       3      66 .] 0.98

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 9.4e-37
  Fe-S_assembly  1 lkWtdseeIAiaLyekypdvdpltvrFtdLhewvleLpefdddpeksnEkiLEaIqmaWleeae 64
                   lkWtds+eI++aLy++ypd+dp+tvrFtd+h+w+++L+efdddp++snEkiLEaI++ Wl+eae
     CTQ29339.1  3 LKWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEEFDDDPNASNEKILEAILLVWLDEAE 66
                   79************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 585.66
//
Query:       CTQ29340.1  [L=111]
Description: (2FE-2S) ferredoxin, electron carrer protein, believed to be involved in assembly of Fe-S clusters [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-16   57.6   4.1    1.3e-15   57.1   4.1    1.1  1  Fer2      2Fe-2S iron-sulfur cluster binding domain
    0.00085   19.3   0.9     0.0014   18.6   0.9    1.6  1  Fer2_4    2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   4.1   1.4e-19   1.3e-15       5      78 .]      14      92 ..      11      92 .. 0.91

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1.4e-19
                TEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSS.SSTTEEEEEESCE.CTTSSSSTHHHHHTTEE.....EEGGGSEES CS
        Fer2  5 gkevevevadgettlldaaeenggidipysCgggg.CgtClvevlegev.qsdetelegeeldegkl.....rlaCqtivt 78
                + ++ ve+++get +ldaa +  gi+i+++C+ ++ C tC++ v eg    ++++e+e+++ld+++      rl+Cq++vt
  CTQ29340.1 14 PDGIVVEAETGET-ILDAALRS-GIEIEHACEKSCaCTTCHCIVREGFDsLAESSEDEDDMLDKAWGlepdsRLSCQARVT 92
                6778999999999.99999999.**********************997766669***********99************97 PP

>> Fer2_4  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.9   1.5e-07    0.0014       9      38 ..      15      44 ..      11      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.5e-07
      Fer2_4  9 DGkevtvpeGdtvasAllangvdvprscky 38
                DG  v+++ G+t+++A+l+ g+++ + c +
  CTQ29340.1 15 DGIVVEAETGETILDAALRSGIEIEHACEK 44
                99*********************9988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 894.04
//
Query:       CTQ29341.1  [L=616]
Description: DnaK-like molecular chaperone specific for IscU [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.8e-198  659.5   0.0   4.5e-198  659.2   0.0    1.0  1  HSP70     Hsp70 protein
    1.2e-14   53.9   0.1    3.6e-13   49.1   0.1    2.5  2  MreB_Mbl  MreB/Mbl protein


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  659.2   0.0    5e-202  4.5e-198       2     598 ..      22     600 ..      21     601 .. 0.97

  Alignments for each domain:
  == domain 1  score: 659.2 bits;  conditional E-value: 5e-202
                 EEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEEE CS
       HSP70   2 iGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavve 100
                  GiDLGttns+va +++g++e++ +++g+   Psvv ++     vG  A+ +a+++p+nt+ svKr++Gr+++d  +q+++++lpy+++++eng ++++
  CTQ29341.1  22 AGIDLGTTNSLVATVRSGQAETLPDHQGRYLLPSVVNYHASGLTVGYDARLNAAQDPANTISSVKRMMGRSLAD--IQNRYPHLPYQLQASENGLPMIQ 118
                 6*********************************************************************9999..*********************** PP

                 EEETTEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSSXEE CS
       HSP70 101 veaagekftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGggtfd 199
                 ++  g  ++p ++sa +Lk l ++a + l  +++ +vitvPaYf+daqRq tkdA+++AGL+vlR++NepTAaa+aYGld+ + e +++vyDlGggtfd
  CTQ29341.1 119 TA--GGLLNPIRVSADILKALAARATEALAGELDGVVITVPAYFDDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQ-EGVIAVYDLGGGTFD 214
                 99..99****************************************************************************9.*************** PP

                 EEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEEHHHH CS
       HSP70 200 vSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlseklsRakf 298
                 +Sil+l++Gvfev+aT gD++lGG+dfD+ l+++l+e+   +     ++d++  ++l++aa  aK++LS++  + +++e          ++++++R++f
  CTQ29341.1 215 ISILRLSRGVFEVLATGGDSALGGDDFDHLLADYLREQAGFS----DRSDNRLQRELLDAAIAAKIALSDA--EAAHVE-----V--GGWQGDITRSQF 300
                 ***********************************9987666....566779999***************3..333333.....3..248889****** PP

                 HHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEBESS-EEEE CS
       HSP70 299 eelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllDvtpLslgie 397
                 ++l+++l++rtl  +++alkda+++++e+ evv+vGGstR+P v+e+v e+fg+ p ++++pD++vaiGAA+qa++l g++  ++llllDv+pLslg+e
  CTQ29341.1 301 NDLIAPLVKRTLMTCRRALKDAGVEAQEVLEVVMVGGSTRVPLVRERVGEFFGRTPLTSIDPDKVVAIGAAIQADILVGNKPDSELLLLDVIPLSLGLE 399
                 *************************************************************************************************** PP

                 ETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTCCEEEEEE CS
       HSP70 398 tlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketgkeeeiti 496
                 t+gg+++k+i+rnttip  ++q f+t++d+qta++i+v+qgerelv+d+++l++f+l+gip++p+G  +i+Vtf++da+G+l+v+a++k+tg+e++i++
  CTQ29341.1 400 TMGGLVEKVIPRNTTIPVARAQEFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQV 498
                 *************************************************************************************************** PP

                 ECCSSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHCHTTSSCHHHHHHHHHHHHHHHHHHHH CS
       HSP70 497 easeglseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleeeaekvseaekekvesaieeLkeeleeeekeeieakteelkkvvekiae 595
                 + s gl++ ei+ m+kd++++ae+d ++++ +e+k ea ++++sl ++l+ +a  +s+ae++++++a+e+++++++++++++i++++++++++++++a+
  CTQ29341.1 499 KPSYGLTDGEIATMIKDSMSYAEQDIQARMLAEQKVEAARVLESLTSALAADAALLSAAERQAIDAAAEQVRAAAAGDDADAIKEAIKNIDTQTQEFAA 597
                 ***********************************************************************************************9988 PP

                 HHH CS
       HSP70 596 kly 598
                 + +
  CTQ29341.1 598 RRM 600
                 765 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.0   0.0    0.0082        74       4      19 ..      22      37 ..      19      99 .. 0.85
   2 !   49.1   0.1     4e-17   3.6e-13      66     318 ..     122     373 ..     114     379 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.0082
                EEEEE-SSEEEEEETT CS
    MreB_Mbl  4 lgiDLGtantlvyvkg 19
                 giDLGt+n lv +  
  CTQ29341.1 22 AGIDLGTTNSLVATVR 37
                59*********96544 PP

  == domain 2  score: 49.1 bits;  conditional E-value: 4e-17
                 TEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEET CS
    MreB_Mbl  66 GviadlevaeellkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevavisl 164
                 G +  ++v +++lk +  +++++ + + + vvi+vP   ++ +r+  k+aa+ aG +   l++ep aAAi  gl+  +     v d+Gggt +++++ l
  CTQ29341.1 122 GLLNPIRVSADILKALAARATEALAGELDGVVITVPAYFDDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRL 220
                 7778899999*************999**************************************************9999999*************998 PP

                 TEEE.....EEEEES-SHHHHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHH CS
    MreB_Mbl 165 ggiv.....tsksvrvaGdeldeaiikyirkkynlliGertaekikieigsavkeeeeekmeikGrdlvtglpkevevsseevrealkepvsaiveavk 258
                 +  v     t     ++Gd++d+ + +y+r++      +r+ ++++ e+  a+  ++    + +  ++  g   +  ++ ++ ++ ++  v++ + + +
  CTQ29341.1 221 SRGVfevlaTGGDSALGGDDFDHLLADYLREQAGF--SDRSDNRLQRELLDAAIAAKIALSDAEAAHVEVGG-WQGDITRSQFNDLIAPLVKRTLMTCR 316
                 75441111133456899**************9775..68999999999988888888888888877777764.45789999****************** PP

                 HHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHT CS
    MreB_Mbl 259 evLektppeLaadivdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtgkv 318
                 ++L+++  e a ++++  +v++GG++ +  +++ + e +g    ++ dp ++va G+++ 
  CTQ29341.1 317 RALKDAGVE-AQEVLE--VVMVGGSTRVPLVRERVGEFFGRTPLTSIDPDKVVAIGAAIQ 373
                 ****99999.667776..8999***************99999999999*****9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4482.24
//
Query:       CTQ29342.1  [L=171]
Description: DnaJ-like molecular chaperone specific for IscU [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-17   63.1   7.3    8.4e-17   61.4   4.9    2.2  2  HSCB_C      HSCB C-terminal oligomerisation domain
    3.9e-07   30.1   0.1    6.8e-07   29.3   0.1    1.4  1  DnaJ        DnaJ domain
  ------ inclusion threshold ------
      0.022   15.1   0.4      0.043   14.2   0.4    1.7  1  EF-hand_14  EF-hand domain


Domain annotation for each model (and alignments):
>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.066   3.9e+02      49      71 ..      53      74 ..      34      75 .. 0.69
   2 !   61.4   4.9   1.4e-20   8.4e-17       2      74 ..      88     160 ..      87     162 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.066
                HHHTT-HHHHHHHHHHHHHHHHH CS
      HSCB_C 49 afekkdleaaadllrrlrYleki 71
                 + ++ ++++++ l r  Yl ++
  CTQ29342.1 53 TI-NQAWQTLRHPLTRAEYLLSL 74
                22.55899999999999998776 PP

  == domain 2  score: 61.4 bits;  conditional E-value: 1.4e-20
                 -HHHHHHHHHHHHHHHCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH CS
      HSCB_C   2 dpefLmevMelrEeleeaeeaadkeeleelkaeveerieeleaeleeafekkdleaaadllrrlrYlekikee 74 
                 d++fLme++elrEel+e+ +a+d ++le + ++v++  ++  + + +++ ++ +eaaad++r+lr+l+k++ +
  CTQ29342.1  88 DTAFLMEQLELREELDEIGQAKDDARLEGFIKRVKALFDTRQQLMVDQLHNESWEAAADTVRKLRFLDKLRSS 160
                 99****************888899*************************888******************976 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   1.1e-10   6.8e-07       1      62 [.       2      70 ..       2      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.1e-10
                HHHHHHTSSTT..G-HHHHHHHHHHHHHHHSTTTSCCHHHHHH.....HHHHHHHHHHHHTSHHHHHHH CS
        DnaJ  1 dyYeiLgvskd..asedeIkkaYrklalkyHPDknpkdpeaee.....kFkeineAyevLsdpekRkqY 62
                dy+ + g++ +   s +++  +Y++l ++yHPDk ++ p ae+     +   in+A+++L  p  R++Y
  CTQ29342.1  2 DYFTLFGLPASytLSLEQLAVRYQDLQRQYHPDKFASAPAAEQlaavqHSATINQAWQTLRHPLTRAEY 70
                677888888874457899***************997777655555554889****************99 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   7.1e-06     0.043      20      54 ..      96     132 ..      77     169 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.1e-06
  EF-hand_14  20 akllkaLaetGirkdDpRLkellkklkkvekeks..e 54 
                  +l ++L e G  kdD RL+ ++k++k + ++++   
  CTQ29342.1  96 LELREELDEIGQAKDDARLEGFIKRVKALFDTRQqlM 132
                 57899**********************9988876332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1360.35
//
Query:       CTQ29343.1  [L=107]
Description: iron-binding protein, believed to be involved in Fe-S protein formation or repair [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-26   91.6   0.0    3.7e-26   91.5   0.0    1.0  1  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.0   2.1e-30   3.7e-26       1     111 []       1     103 [.       1     103 [. 0.99

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 2.1e-30
                  -EEEE-HHHHHHHHHHHHCTTEC..EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEE CS
  Fe-S_biosyn   1 mkitlteaAaeklkkllaedkke..lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgL 96 
                  m+itl+++Aa++++++la+++k   lrL+v++ g       Cs g+ y l++vde+ +++d+v+e++g+kv+++ +sl+fl +g++ldfv++  + g+
   CTQ29343.1   1 MSITLSDSAAARVNAFLANRGKGfgLRLGVRTSG-------CS-GMAYVLEFVDEP-AAEDTVFEDKGVKVVIDGKSLQFL-DGTQLDFVKEGLNEGF 88 
                  99******************999***********.......**.************.************************.9*************** PP

                  EEETCCEEEEEEEEE CS
  Fe-S_biosyn  97 ksdngilddnvglgk 111
                  k++n++++d++g+g+
   CTQ29343.1  89 KFTNPNVKDECGCGE 103
                  *************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 875.10
//
Query:       CTQ29344.1  [L=128]
Description: iron-binding protein believed to be involved in Fe-S protein formation or repair; function as a scaffold for the assembly of the transiently bound Fe/S cluster [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-57  192.8   0.2    2.3e-57  192.6   0.2    1.0  1  NifU_N    NifU-like N terminal domain


Domain annotation for each model (and alignments):
>> NifU_N  NifU-like N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.6   0.2   1.3e-61   2.3e-57       1     127 [.       2     126 ..       2     128 .] 0.98

  Alignments for each domain:
  == domain 1  score: 192.6 bits;  conditional E-value: 1.3e-61
                 CSCHHHHHHHHSSSSBSS-TTSSS--EEEEEEETTTTEEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHCCCCHHHHHHHHTC CS
      NifU_N   1 aysdkvldhyknPrnvGvleeedakvgvgevgapacGDavrLqikvdeetdriedakFktfGCgsaiAssslltelvkgktleealkitnkeiaeelgg 99 
                 ays+kv+dhy+nPrnvG+++++d++vg+g+vgapacGD+++Lqikv++e ++ieda+Fkt+GCgsaiAsssl+te+vkgk+l+ea++i+n++ia+el+ 
  CTQ29344.1   2 AYSEKVIDHYENPRNVGSFDNSDENVGSGMVGAPACGDVMKLQIKVNNE-GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIADELE- 98 
                 69**********************************************7.************************************************. PP

                 SCSSSCHCSCHHHHHHHHHHHHHHHHCT CS
      NifU_N 100 lpkeklhcsvlaedalkaavkkYkakkk 127
                 lp++k+hcs+laeda+kaa+++Yk+k++
  CTQ29344.1  99 LPPVKIHCSILAEDAIKAAIADYKSKRE 126
                 *************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 979.26
//
Query:       CTQ29345.1  [L=404]
Description: cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-89  298.5   0.0    7.5e-89  298.3   0.0    1.0  1  Aminotran_5      Aminotransferase class-V
    6.8e-07   28.1   0.0    4.3e-06   25.5   0.0    1.9  2  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    3.6e-05   23.2   0.1    4.6e-05   22.8   0.1    1.2  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.019   14.3   0.2      0.035   13.4   0.2    1.4  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.3   0.0   1.7e-92   7.5e-89       1     370 [.       5     368 ..       5     369 .. 0.97

  Alignments for each domain:
  == domain 1  score: 298.3 bits;  conditional E-value: 1.7e-92
                  EEEBTTTS----HHHHHHHHHHHH..CTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC.-TTTSEEEEET CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyyt..dynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslars.lkpgdeivvte 95 
                  iyld++Att++ ++V +++++++t     +n+ +  h++g++a +av+ ar+++ael++a+   ei+ftsG+te+ nl+++++a+  +k+g++i++++
   CTQ29345.1   5 IYLDYSATTPVDPRVAEKMMQFLTmdGTFGNPASRSHRFGWQAEEAVDIARNQIAELVGADP-REIVFTSGATESDNLAIKGAANFyQKKGKHIITSK 101
                  8*********************98335789*******************************7.**********************9************ PP

                  TSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTES CS
  Aminotran_5  96 aehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvD 193
                  +eh+a l ++++l+ r+g++v+++  +++g +dl+ele++++++t lv+i+hv+n++G++q+++ ig++++++g++++vDa+q+vg+ pid+++l+vD
   CTQ29345.1 102 TEHKAVLDTCRQLE-REGFEVTYLAPQSNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIATIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVD 198
                  *************8.89********************************************************************************* PP

                  EEEEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_5 194 flafsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerl 291
                  +++fsghK++gP+GiG+lyvr++   ++e    gg+       +e++       +++GT +v +i+g+g+a ++  + ++e+ +++ ++l+++l +++
   CTQ29345.1 199 LMSFSGHKIYGPKGIGALYVRRKPRIRIEAQIHGGG-------HERG-------MRSGTLPVHQIVGMGEAYRIA-KEEMESEMARLRTLRNRLWNGV 281
                  ****************************98888888.......8888.......899****************99.999999**************** PP

                  CTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTT....HHHHHHTT.S.......-EEEEE--TTS-HHHHHH CS
  Aminotran_5 292 kslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhca....qplmkrlale.......gtvRaSlyiynteeevdr 370
                  k++++v+l+g d ++  ++i++++f++v+ e + ++L++   av+sG++c+    +p+++++al        +++R+Sl++ +teee+d+
   CTQ29345.1 282 KDMEEVYLNG-DLEQGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTsaslEPSYVLRALGmtdelahSSIRFSLGRFTTEEEIDY 368
                  ********99.89********************999998..**********9999999888888888*********************95 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   9.5e-10   4.3e-06      56     196 ..      53     204 ..      25     212 .. 0.77
   2 ?    0.2   0.0     0.047   2.1e+02     318     366 ..     332     378 ..     305     393 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 9.5e-10
                      HHHHHHHHHHT-.SEEEEESSHHH.....HHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST.....TSHHHHHHHCCTTE CS
  Cys_Met_Meta_PP  56 vleeriaaLegg.eaalavssGma.....AiaaailallkaGdeivvsddlYggtqrllkkvlkklgievkfvdt.....sdleelekaikent 138
                         ++ia+L g+  + ++++sG +     Ai+ a     k+G++i++s++ ++   + ++++ ++ g ev++  +      dl+ele+a+++ t
       CTQ29345.1  53 IARNQIAELVGAdPREIVFTSGATesdnlAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLAPqsngiIDLKELEAAMRDDT 145
                      55689999999966889999999832222443334445567*********999999999875.566666666665334446899********** PP

                      EEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GG.GGT-SEEEEET CS
  Cys_Met_Meta_PP 139 klvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrpl.klgaDivvhSa 196
                       lv +  + n    v Di++i ++++++g++  vD+t + + l   l +l +D+   S+
       CTQ29345.1 146 ILVSIMHVNNEIGVVQDIATIGEMCRARGIIYHVDATQSVGKLPIDLsQLKVDLMSFSG 204
                      *************************************9988554333245666666555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.047
                      C-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE-- CS
  Cys_Met_Meta_PP 318 nlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvG 366
                      +l+  +++  lG ++ l++  +  +  + + ee++++++  dliR s+G
       CTQ29345.1 332 SLEPSYVLRALGMTDELAHSSIRFSLGRFTTEEEIDYAI--DLIRKSIG 378
                      555567788899999999999999999999999999999..99999998 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1     1e-08   4.6e-05      38     169 ..      55     182 ..      45     310 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1e-08
                      HHHHHHHTT-S..EEEEES-HHHHHHHHH....HHH--TTEEEEEETT-H.HHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S-TT CS
  Beta_elim_lyase  38 edavaelfgke..aalfvpqGtaAnsill....killqrgeevivtepah.ihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevgah 124
                       +++ael+g++   ++f+   t ++++++    +   ++g+ +i +++ h    d+++++ e +g +++ l  +++G +dl++leaa++++   
       CTQ29345.1  55 RNQIAELVGADprEIVFTSGATESDNLAIkgaaNFYQKKGKHIITSKTEHkAVLDTCRQL-EREGFEVTYLAPQSNGIIDLKELEAAMRDD--- 144
                      678899999987678899999********7763333467777888888772567788887.7899999*9999999**************3... PP

                      S-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEET CS
  Beta_elim_lyase 125 eekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgA 169
                         + l+s+   nn     +  ++ ++ + ++++++gi  h+D++
       CTQ29345.1 145 ---TILVSIMHVNNE----IGVVQDIATIGEMCRARGIIYHVDAT 182
                      ...558888888884....556789999***************97 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   7.9e-06     0.035      40     150 ..      68     186 ..      45     193 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.9e-06
                      EEEEESSHHHHHHHHHHH...TTTTTT-EEEEESSS-THHHHHHHHT...T-EEEEE-B-TTTSSB-GGGCGGG--TTE..EEEEEB-G.GGB- CS
  DegT_DnrJ_EryC1  40 haiavssGtaAlhlaLra...lgvgpgdeVIvpsltFvatanavlel...gakpvfvDvdpdtynidpaaieaaitert..kaIlpVhl.yGqv 124
                        + +s +t++  la++    +  ++g+ +I+ ++   a   + ++l   g ++ ++  +     id +++eaa    t    I+ V+   G v
       CTQ29345.1  68 EIVFTSGATESDNLAIKGaanFYQKKGKHIITSKTEHKAVLDTCRQLereGFEVTYLAPQ-SNGIIDLKELEAAMRDDTilVSIMHVNNeIGVV 160
                      455566667777777775445666799999999999999888887772224455555444.6688**************66667777544799* PP

                      --HHHHHHHHHHCT-EEEEE-TT-TT CS
  DegT_DnrJ_EryC1 125 admdalkaiaakhglkvieDaAhAlG 150
                       d++ + +++++ g++   Da +++G
       CTQ29345.1 161 QDIATIGEMCRARGIIYHVDATQSVG 186
                      ************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3267.69
//
Query:       CTQ29346.1  [L=163]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-27   94.7   0.0    5.7e-27   93.9   0.0    1.4  1  Rrf2            Transcriptional regulator
     0.0086   15.9   0.0      0.015   15.1   0.0    1.5  1  MarR_2          MarR family
     0.0096   15.6   0.3      0.017   14.8   0.0    1.6  2  HrcA_DNA-bdg    Winged helix-turn-helix transcription repress
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.038   13.5   0.0    1.7  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.075   12.6   0.0       0.13   11.8   0.0    1.4  1  HTH_47          winged helix-turn-helix
      0.079   13.1   0.0       0.14   12.3   0.0    1.5  1  HTH_AraC        Bacterial regulatory helix-turn-helix protein
       0.18   12.0   0.0        0.4   10.9   0.0    1.6  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind


Domain annotation for each model (and alignments):
>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   2.2e-30   5.7e-27       1      83 []       1      83 [.       1      83 [. 0.99

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 2.2e-30
                X---HHHHHHHHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSHCCCSBHHHHHHHH CS
        Rrf2  1 MklsskteyalhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakppeeItlldvvrav 83
                M+l+sk++ya++a+l+ a+++e +pv +++i+erq+is syle+++++Lrk+glv svrG+gGGy L k++ +I +++v+ av
  CTQ29346.1  1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDAGSIAVGEVISAV 83
                9*******************************************************************************997 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     6e-06     0.015      19      58 ..      24      62 ..       9      64 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 6e-06
                TSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSS CS
      MarR_2 19 grdltvgelarrlglsksavsrilkrLvaaGLverrpgpe 58
                g+ +  +++ +r g+s s++ ++  rL + GLv  ++gp+
  CTQ29346.1 24 GP-VPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPG 62
                33.899***************************9999876 PP

>> HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor, HrcA DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.7e-06     0.017      21      64 ..      23      66 ..       2      75 .. 0.75
   2 ?   -3.7   0.1       3.8   9.6e+03      54      64 ..      93     103 ..      92     108 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.7e-06
  HrcA_DNA-bdg 21 kravKgeeiAevlkrneGtvRNqlqsLkalgLvegvpGPkGGYk 64
                  + +v   +i e  +    ++   ++ L+  gLv++v GP GGY 
    CTQ29346.1 23 TGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYL 66
                  55666677777777777788888999*****************7 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.8
  HrcA_DNA-bdg  54 egvpGPkGGYk 64 
                   +g+ G +GG k
    CTQ29346.1  93 QGKGGCQGGDK 103
                   68899999965 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.5e-05     0.038      16      47 ..      24      55 ..      21      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.5e-05
      HTH_24 16 prisqreLAerlglSpstvnrrlkrLeeeGlI 47
                +  + ++++er g+S+s + +   rL ++Gl+
  CTQ29346.1 24 GPVPLADISERQGISLSYLEQLFSRLRKNGLV 55
                566789************************98 PP

>> HTH_47  winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.1e-05      0.13      31      77 ..       9      56 ..       2      57 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.1e-05
                --HHHHHHH.HHH-EEEEEHHHHHHHHT--HHHHHHHHHHHHHTT-EE CS
      HTH_47 31 qaemallwv.LnlaDGkrsLldiAeriglpfdrvaaiaraLaeaglla 77
                 a+ a+l+v Ln   G   L di+er g++   ++++  +L+++gl++
  CTQ29346.1  9 YAVTAMLDVaLNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVS 56
                567889987699999*******************************96 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.6e-05      0.14       4      31 ..      21      48 ..      19      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.6e-05
                CCSCT--HHHHHHHTTSSHHHHHHHHHH CS
    HTH_AraC  4 nlstnltiediAdelgfSrsyFsrlFkk 31
                +++ +  ++di++  g+S sy+ +lF++
  CTQ29346.1 21 SETGPVPLADISERQGISLSYLEQLFSR 48
                6688899*******************87 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016       0.4      19      53 ..      22      56 ..      17      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
                    HHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress 19 ekkvvktkdlaerLnvspssVsemlkkLekdGyve 53
                    e ++v  +d++er ++s s   +  ++L+k+G+v 
      CTQ29346.1 22 ETGPVPLADISERQGISLSYLEQLFSRLRKNGLVS 56
                    77889999*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1240.63
//
Query:       CTQ29347.1  [L=244]
Description: putative methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-33  115.8   0.1      3e-33  115.0   0.1    1.4  2  SpoU_methylase   SpoU rRNA Methylase family
    0.00088   19.2   0.0      0.045   13.6   0.0    2.2  2  Methyltrn_RNA_4  SAM-dependent RNA methyltransferase
  ------ inclusion threshold ------
      0.073   13.2   0.0       0.14   12.3   0.0    1.4  1  DUF531           Protein of unknown function (DUF531)


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.1   5.1e-37     3e-33       2     142 .]       5     154 ..       4     154 .. 0.89
   2 ?   -3.4   0.0       1.6   9.6e+03      56      74 ..     176     194 ..     164     205 .. 0.70

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 5.1e-37
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHH.EEEESSHHHHHHHHCCCTEEEEEESTT-SEGC....CS CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevle.lkvvdsleealkelkeegfalvatslkgksls....ei 91 
                     +++vlve+++ gN+G++aR++k++g+++l+lv+p  +   +++a+++aaga +v+  +++vd+l+eal+ +  +    v+ts+++++l     + 
      CTQ29347.1   5 IRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVK--PDSQAIALAAGASDVIGnAQIVDTLDEALAGCSLV----VGTSARSRTLPwpmlDP 93 
                     79*******************************9987..77899***********99****************9....99999888777544422 PP

                     ....HHH.......TTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  92 ....dlk.......ekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
                           k        +valvfG+E+ Gl+n++l++++++v I  ++e++SLN+a+Av++++y
      CTQ29347.1  94 recgL-KsvaegqhAPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAY 154
                     44440.25556778**********************************************98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.6
                     HHEEEESSHHHHHHHHCCC CS
  SpoU_methylase  56 lelkvvdsleealkelkee 74 
                      ++  vd+le++ ++l+++
      CTQ29347.1 176 APYPLVDDLERFYDHLEQT 194
                     4556788888888888876 PP

>> Methyltrn_RNA_4  SAM-dependent RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0096        57      28      50 ..      18      40 ..       4      51 .. 0.82
   2 !   13.6   0.0   7.5e-06     0.045      95     176 ..      66     152 ..      45     156 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0096
                     HHHHHHHHHHTT-SEEEEE---H CS
  Methyltrn_RNA_4 28 lhDiaRsartygvkkyyvvtple 50
                     +  +aR+ +t g++++++v+pl 
       CTQ29347.1 18 MGSVARAMKTMGLTNLWLVNPLV 40
                     5679*****************85 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 7.5e-06
                      HHHHHSS--EEEE--SS--SS-B-HHH.....HHHHHHH--S-EEEEE--T.T---HHHHTT-SEEB--TTTTSS-----HHHHHHHH CS
  Methyltrn_RNA_4  95 iekeegkkplvvatsArkkentvsyee.....lrelleeeekpvlllfGtg.wGlaeevlekadyiLepirgaseynHLsvrsAvaii 176
                      + ++     lvv tsAr+++    + +     l+++ e ++ pv l+fG    Gl+++ l+k++y + +i ++ ey  L    Av +i
       CTQ29347.1  66 LDEALAGCSLVVGTSARSRTLPWPMLDprecgLKSVAEGQHAPVALVFGRErVGLTNDELQKCHYHV-AIAANPEYSSLNLAMAVQVI 152
                      55555556788889998554433333211111566778899********8538************97.6999*******999999887 PP

>> DUF531  Protein of unknown function (DUF531)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.3e-05      0.14     111     167 ..     100     156 ..      90     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.3e-05
      DUF531 111 evaeeilrkksvllliGlGrkGlPkellklakyhldit..ekgvslEtctAigaiaavi 167
                  vae   ++ +v l++G  r Gl ++ l++++yh+ i+   +  sl+ + A+ +ia  +
  CTQ29347.1 100 SVAEG--QHAPVALVFGRERVGLTNDELQKCHYHVAIAanPEYSSLNLAMAVQVIAYEV 156
                 55554..78899*************************9434567999999999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1940.28
//
Query:       CTQ29348.1  [L=267]
Description: inositol monophosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-75  252.3   0.0    6.3e-75  252.2   0.0    1.0  1  Inositol_P  Inositol monophosphatase family
  ------ inclusion threshold ------
       0.12   11.8   0.0       0.24   10.9   0.0    1.5  1  FBPase      Fructose-1-6-bisphosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.2   0.0     7e-79   6.3e-75       3     269 ..       2     260 ..       1     263 [. 0.97

  Alignments for each domain:
  == domain 1  score: 252.2 bits;  conditional E-value: 7e-79
                 HHHHHHHHHHHHHHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHHHHH CS
  Inositol_P   3 eevtkaavelaakagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTknFvr 101
                 ++++++av++a+kag++++++++ ++ ++e+++ +g++d+vt++d+a+e++i+e++++++p+h+i++ee+++++     +e+++ w++DP+DGT+nFv+
  CTQ29348.1   2 HPMLNIAVRAARKAGNLIAKHYE-TPDTVETSQ-KGSNDFVTNVDKAAEAIIIETIRKSYPQHTIITEESGEHAG----EEQDVQWVIDPLDGTTNFVK 94 
                 7899******************9.999999888.8****************************************....8888**************** PP

                 T-SG-EEEEEEEETTEEEEEEEEETTTTEEECEETTTEEEETCEEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCHEEEBESSHHHHH CS
  Inositol_P 102 gipqvaVsigllvegkpvlGviaqPllgqlysaakgkGaflngeklplsrappiseallvtlfavssrkdtseasllekvesavsaegvrsvgssalkl 200
                 + p++ Vsi++  +g+  ++v+++P+ ++l++a++g+Ga lng++l+ s+a ++++ +++t f+++++++ +  + + + ++  +a  +r+ gs+al+l
  CTQ29348.1  95 RLPHFSVSIAVRIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGSNARDLDGTIIATGFPFKAKQHATTYMNILGNMFTECAD-FRRTGSAALDL 192
                 **********************************************************************99989999998999999.*********** PP

                 HHHHHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEEEEESSSCSSSTTSSEEEEESCHHHHHHHHHHHCC CS
  Inositol_P 201 aavaeGkadaylefgrekkWDhAAGeaileeaGGvvtdakgegrlllargiiaanqkelaellaaavee 269
                 a+va+G++d y e+  +k+WD+AAGe+i +eaG++v+d++g+++++l+++i+a+n+++ ++ la  +e+
  CTQ29348.1 193 AYVAAGRVDGYFEIA-LKPWDFAAGELIAREAGAIVCDFTGGHNYMLTGNIVAGNPRVVKAMLANMREQ 260
                 ***************.******************************************99999988876 PP

>> FBPase  Fructose-1-6-bisphosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.6e-05      0.24      59     117 ..      38      92 ..      12     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.6e-05
      FBPase  59 deqkklDvladeiliealkaseevkvlvSEEeeelivlerekegkyvvafDPlDGSSni 117
                 d + ++D  a+ i+ie +++s    +++ EE+ e        e     ++DPlDG  n 
  CTQ29348.1  38 DFVTNVDKAAEAIIIETIRKSYPQHTIITEESGEHAGE----EQDVQWVIDPLDGTTNF 92 
                 667899*************************9997543....44555678*****9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2189.55
//
Query:       CTQ29349.1  [L=278]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      181  (0.0100954); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 2136.88
//
Query:       CTQ29350.1  [L=326]
Description: putative transmembrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-38  130.3  23.5    2.7e-35  122.1  18.8    2.6  2  NicO      High-affinity nickel-transport protein
  ------ inclusion threshold ------
        4.6    6.0   7.1       0.96    8.2   0.9    2.1  2  PAP_PilO  Pilin accessory protein (PilO)


Domain annotation for each model (and alignments):
>> NicO  High-affinity nickel-transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.14   1.2e+03      53     109 ..      23      47 ..      12      62 .. 0.56
   2 !  122.1  18.8   3.1e-39   2.7e-35       2     281 ..      72     317 ..      71     318 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.14
        NicO  53 lvavllvvaavlvlrltslsetgaaigteiasFllvilllnllllrklrklfrkler 109
                 l+a                                v  ++ ++l+r + ++  ++  
  CTQ29350.1  23 LLA--------------------------------VSIIGGIWLWRAWPQVLMQSAV 47 
                 334................................4445555555555555444433 PP

  == domain 2  score: 122.1 bits;  conditional E-value: 3.1e-39
        NicO   2 lvliglsflyGvrHAvdagHgkaiirklmqagktalkrGillslgsslvvvlvavllvvaavlvlrltslsetgaaigteiasFllvilllnllllrkl 100
                 l+l g sf+yGv+HA+++gHgk +i + + ++  +lk +i l+l++sl+++lva++lvv++ ++l+l+  +   +  ++e +s+llv +l+ ll++r l
  CTQ29350.1  72 LSLLGFSFVYGVLHALGPGHGKIVITTWLATHPAKLKSSIGLTLAASLLQGLVAIALVVVVLALLQLPARQLHLSSFWLEKGSYLLVGALGLLLCWRAL 170
                 57899********************************************************************************************** PP

        NicO 101 rklfrklerlgrapaaeleaalakrgllsrilgklfrlitkswhmypvgflfglGfdtateiallaidpsealkgdsfdsilalpalfavGlrlcdgad 199
                  kl++ l+r      + + +a++                 +++h  ++g           +++ + + p ++++gd++ ++    +++++G+r+c+ga+
  CTQ29350.1 171 KKLRLLLRR------P-TFTAFT----------------PHHVHNEHCG-----------CGHQHLPAPEQLQAGDDWRARA--AIVLSMGMRPCSGAI 233
                 ***999988......3.333333................2467778999...........7777******888788766665..69************* PP

        NicO 200 ivlmfaalnwaflggrklvyamsitgtsitvalliglivtlklvakkfalsgs..lwaaiisleleiv.Gavlvllfallllgas 281
                 +vl+f+   + f +g+ + +am+  gts t+++l+ l+  ++++a +++ +++  lw+++++++l ++ G++l++  ++++l+a+
  CTQ29350.1 234 MVLLFSKVIGVFGWGMAAALAMAA-GTSLTITALALLVHGFRQLAIRLSRHQApaLWKQVSWATLALAgGVILLAAAGVMWLSAV 317
                 ************************.**************************9999*********666516677788999***985 PP

>> PAP_PilO  Pilin accessory protein (PilO)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.9   0.00011      0.96     153     212 ..      13      64 ..       3      70 .. 0.78
   2 ?    0.9   0.7     0.018   1.6e+02     149     183 ..     279     313 ..     255     316 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00011
    PAP_PilO 153 rlrsvlskaeiallavalvlsllilgGlvgWrlyeakkeaeaqaalaeavevqraqqaee 212
                 r++        al + al+l++ i+gG+++Wr + +   + a  ++  ++e  r  qa +
  CTQ29350.1  13 RWK--------ALWPLALLLAVSIIGGIWLWRAWPQVLMQSAVWQRSLNLELSRLLQAVA 64 
                 333........366778999***************9999999999988888888777655 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.018
    PAP_PilO 149 rlsrrlrs.vlskaeiallavalvlsllilgGlvgW 183
                 rlsr + + ++++ + a+la a+ + ll+ +G++ W
  CTQ29350.1 279 RLSRHQAPaLWKQVSWATLALAGGVILLAAAGVM-W 313
                 677777778999****************998864.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2299.02
//
Query:       CTQ29351.1  [L=212]
Description: ABC transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-59  198.9   0.1    1.1e-58  198.8   0.1    1.0  1  DUF1007   Protein of unknown function (DUF1007)


Domain annotation for each model (and alignments):
>> DUF1007  Protein of unknown function (DUF1007)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.8   0.1   5.9e-63   1.1e-58       3     211 .]      10     211 ..       8     211 .. 0.96

  Alignments for each domain:
  == domain 1  score: 198.8 bits;  conditional E-value: 5.9e-63
     DUF1007   3 lllllllsgaalAHPHvfidartelvfdddgrltglrhtWtfDelySafllqgldknkdgvldeeelaelakenvenlkeyeYFtelkaggkklkfaep 101
                 ++++++ls +a+AHPH+fi +++e v++d   l++++++Wt+De++S++ll+++ ++k+g   +e +++la+e+++n+ +++YF+el+++g+++kf++ 
  CTQ29351.1  10 AAFFMVLSWSAAAHPHSFISLQSEPVVKDG-LLSAFKMRWTMDEITSSDLLYDAGNAKPG---SEVWKKLAAEVMANVLGQHYFSELWHNGQRVKFDNR 104
                 6899***********************865.8****************************...************************************ PP

     DUF1007 102 eeeysleyqdgrltlsFtlplkepvkakkkkltlevyDptyYvafeyaedeavtlaga.pagCsvevvePdpdaala.kaasLdeigadafeneeedsd 198
                 ++ y le+++ + +l+Ftlpl +p++ +++++t++++DptyYv++ y++d++ +l    +a+C+++v +P+p++++  +a+sLd+ +    ++++ed++
  CTQ29351.1 105 PDGYGLERDGLQAVLTFTLPLVTPQPIAGQTFTFSTFDPTYYVDMFYDKDSDFSLPAGlRAACKATVMTPKPNDKMLsYAQSLDK-A----DAPPEDMA 198
                 *************************************************99988866559*************************.3....3479**** PP

     DUF1007 199 lgaqfaervtvtC 211
                 lg +fa++vt+tC
  CTQ29351.1 199 LGSYFAQKVTLTC 211
                 ************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1679.75
//
Query:       CTQ29352.1  [L=425]
Description: stationary phase inducible protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-18   64.4   0.0    2.5e-10   40.5   0.0    2.4  2  PRD       PRD domain
  ------ inclusion threshold ------
      0.092   13.2   0.0       0.31   11.5   0.0    1.9  2  DUF2996   Protein of unknown function (DUF2996)


Domain annotation for each model (and alignments):
>> PRD  PRD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.2e-08    0.0002       2      87 ..     131     215 ..     130     217 .. 0.95
   2 !   40.5   0.0   2.8e-14   2.5e-10       3      89 ..     241     328 ..     239     329 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.2e-08
                 HHHHHHHHHHTS-BTTCHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTST--HHHHHHHHHHH CS
         PRD   2 eiiekiekklqikleddslyerLitHlkfaieRlkegitienplleeikekypkefeiakeileeleeeldielpedEiaylalhf 87 
                  +++ + + l+ ++ d + ++ L ++l++++   ++g+  + ++ ++ + +   ef +a+ei+++++++++      E ++l+l+f
  CTQ29352.1 131 ALVNRCARALNRQF-DCRDVQFLRLYLQYCLLEHHRGYSPDFNEEQQRWAQTAAEFTLAQEIVRHWQRRVGAPPHVGEPFFLSLLF 215
                 6899999*******.********************************************************999999999999998 PP

  == domain 2  score: 40.5 bits;  conditional E-value: 2.8e-14
                 HHHHHHHHHTS-B.TTCHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTST--HHHHHHHHHHHHH CS
         PRD   3 iiekiekklqikl.eddslyerLitHlkfaieRlkegitienplleeikekypkefeiakeileeleeeldielpedEiaylalhfls 89 
                 +i+ ++   +  + +++ l  +L++Hl+ a+ R    i i+  l+ee+ + yp++  +++ +l+e ee+++i+++e+E++ +a++f++
  CTQ29352.1 241 LIHRFQILAGRAFsDEQGLSDQLYIHLSQALIRSVFAIGIDSTLTEEVTRLYPRLLRTTQAALSEFEEAWHIRFNEEETGLIAVIFGA 328
                 67778888888899999999*****************************************************************986 PP

>> DUF2996  Protein of unknown function (DUF2996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.4e-05      0.31       9      30 ..     100     121 ..      98     146 .. 0.90
   2 ?   -3.0   0.0       1.1   9.6e+03      17      30 ..     349     362 ..     344     380 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.4e-05
     DUF2996   9 eFieqdflPalkkalekkgied 30 
                 +F++++f+Palk++l+++gi+ 
  CTQ29352.1 100 QFVNHHFTPALKTQLKQEGIAR 121
                 7******************976 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.1
     DUF2996  17 Palkkalekkgied 30 
                 Pa+++ale++  e 
  CTQ29352.1 349 PAIEEALEQQLREL 362
                 88888888764433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3218.69
//
Query:       CTQ29353.1  [L=378]
Description: putative 3-phenylpropionic transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-44  150.2  31.6      2e-43  148.7  31.6    1.6  1  MFS_1_like     MFS_1 like family
    3.1e-15   55.9  22.5    4.8e-15   55.2  22.5    1.2  1  LacY_symp      LacY proton/sugar symporter
    2.2e-11   43.3  58.5    2.4e-08   33.3  46.6    2.0  2  MFS_1          Major Facilitator Superfamily
    7.5e-11   41.6  25.0      1e-10   41.2  25.0    1.1  1  Nuc_H_symport  Nucleoside H+ symporter


Domain annotation for each model (and alignments):
>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.7  31.6   4.4e-47     2e-43       3     382 ..       8     358 ..       6     361 .. 0.86

  Alignments for each domain:
  == domain 1  score: 148.7 bits;  conditional E-value: 4.4e-47
  MFS_1_like   3 slkilyFfffaalgsllPYltiylkskglkaseigiitlilpltsilsppiwgv.laDrfgkrkkvvilslllsavlflsllfippskerqeesklevs 100
                 +l + yF +f + g +lP+++++l   gl+++ igi++ +  + ++l+++++++ ++D ++  +++ +l+ll  + +++ +                  
  CTQ29353.1   8 WLALSYFTYFFSYGIFLPFWSVWLAGNGLTPETIGILLGAGLVARFLGSLLIAPrVSDPSRLIAALRVLALLTLLFALA-FW----------------- 88 
                 68899********************************************988864888887777766666554444333.33................. PP

  MFS_1_like 101 vaqdvdaektfwilfllvvlasfflaailvlldaatlkelgedrkdyGrqrlfGsvGyaifafitGilidhysvnllpysallyvlaallvisllvvli 199
                       a+  +++l+ +++ +++f +++++l+da++ ++ ++ + dyGr+rl+Gs+ ++i +++tG l+  +    + + +l + +a++l+  ll +++
  CTQ29353.1  89 ------AGSHVAWLLAIIIGFNLFFSPLVPLTDALANTWQKQITMDYGRVRLWGSIAFVIGSALTGKLVSLFDYRAILL-MLSLGVASMLLGMLLKPSV 180
                 ......6999999999****************************************************99998866442.2333334444444444555 PP

  MFS_1_like 200 lnetekesklkvtkslqvllnilknpeviifllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiall 298
                 ++++e  ++ +      + + +l  ++ + fl+ +++l+ ++++++ F  +Y ++ g+s + +G l+ lgvvae+++f +++k++++++++ ll+++ +
  CTQ29353.1 181 MPQGESRQQQGAG---MAAWLTLV-RQSWRFLACVCLLQGAHAAYYGFSAIYWQQAGYSASAVGYLWSLGVVAEVVIFALSKKVFRRFSARDLLLLSAV 275
                 6666665555555...55666555.577899999999999*********************************************************** PP

  MFS_1_like 299 ayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaifl 382
                    +r+ l+++++ +  ++++++Lh  +f ++++aa++y++   + +++ ++q+++s++ +g   a+ ++++G+l+++    ++
  CTQ29353.1 276 CGLIRWGLMGWTTALPGLILAQILHCGTFTVCHLAAMRYIAARQGSEVI-RLQAVYSAVAMGGSIAIMTVFAGFLYQHLHQGVF 358
                 *****************************************77766665.9*************************98766555 PP

>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2  22.5   1.1e-18   4.8e-15      12     391 ..       9     367 ..       3     372 .. 0.82

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 1.1e-18
   LacY_symp  12 falffffyffimsayfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllvlfapfliyvfepllqlnilvGalvG 110
                 +al++f yff ++++ p+++vwl++ +gl+   +Gi+  +  l++  +  l  li  ++    +l+ ++ +l +l+  f +  f    ++  l+  ++G
  CTQ29353.1   9 LALSYFTYFFSYGIFLPFWSVWLAG-NGLTPETIGILLGAG-LVARFLGSL--LIAPRVSDPSRLIAALRVLALLTLLFAL-AFWAGSHVAWLLAIIIG 102
                 6899*******************97.89********99865.444333333..6888999999999999988777766655.55566788888888888 PP

   LacY_symp 111 gvflGlvysagagaieayiekvsraskfeyGkarvfGclGyalcaslaGilfsidpslvfwlasgfalilllllllskpdksssakvadalGankeafs 209
                    + l +s   ++ +a  +   ++ +++yG++r++G++ + ++++l+G l s+ +  +  l    ++  +ll +l kp++  + +  +  Ga   a  
  CTQ29353.1 103 ---FNLFFSPLVPLTDALANTWQKQITMDYGRVRLWGSIAFVIGSALTGKLVSLFDYRAILLMLSLGVASMLLGMLLKPSVMPQGESRQQQGAGMAAW- 197
                 ...7899**********************************************9888888888788899999*********99999999999988887. PP

   LacY_symp 210 lrlalelfkdr.klwvfvlyvvGvasvydvfdqqfavffkslfespeaGtrvfGyvttagellnalimfiaplivnriGaknalliagvimsvrilgsa 307
                     l+l ++  ++   v  + G  + y         f + +++       + Gy+ + g++ + +i ++   +  r  a++ ll+++v   +r     
  CTQ29353.1 198 ----LTLVRQSwRFLACVCLLQGAHAAYYG-------FSAIYWQQAGYSASAVGYLWSLGVVAEVVIFALSKKVFRRFSARDLLLLSAVCGLIRWGLMG 285
                 ....45544331344444444555555543.......4444556667778899*****************************************98888 PP

   LacY_symp 308 fattalevvilkllhalevplllvgvfkyitsafdkrlsatifligfqlskqlaivllstlaGklydkvGfqtaylvlgiivls 391
                 ++t+   +++ ++lh     ++ +++++yi+++  + +   +  +   ++   +i +++++aG ly+++ +q ++ v+++++l 
  CTQ29353.1 286 WTTALPGLILAQILHCGTFTVCHLAAMRYIAARQGSEVI-RLQAVYSAVAMGGSIAIMTVFAGFLYQHL-HQGVFWVMALLTLP 367
                 9999999***********************998665443.34445556777778899**********98.799****9998875 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3  46.6   5.4e-12   2.4e-08       1     322 [.       9     313 ..       9     318 .. 0.74
   2 !   15.8  13.6   1.1e-06    0.0049      58     166 ..     263     370 ..     262     374 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 5.4e-12
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslpl.GrlsdrfGrrr.vlllglllfalglllllfa.sslwlllvlrvlqG 96 
                 l+l++f ++++++i++p+ + +la + g++p +ig+ll++  ++ +++sl++  r+sd  +r    l + +ll++l+ +l+++a s++ +ll+  +   
  CTQ29353.1   9 LALSYFTYFFSYGIFLPFWSVWLAGN-GLTPETIGILLGAGLVARFLGSLLIaPRVSDP-SRLIaALRVLALLTLLF-ALAFWAgSHVAWLLAIIIGFN 104
                 6899****************888777.***********************995566663.34444555555555555.333344366668888888888 PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpap 195
                 l+ + l+p+  al+  w +  + ++ +g + +  s+++++g +l g l+s++ +ra+ + +  +++ +++   l ++ +p+  +  +++++    ++a+
  CTQ29353.1 105 LFFSPLVPLTDALANTWQK--QITMDYGRVRLWGSIAFVIGSALTGKLVSLFDYRAILL-MLSLGVASML---LGMLLKPSVMPQGESRQQ----QGAG 193
                 888**************87..6*********************************9854.5555555545...555566777777777777....8899 PP

       MFS_1 196 lvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglall 294
                 ++  w  l+++   w +l++++l   ++++++ ++ +y  ++ g+s +  +g+l +l+ ++ ++++ l+ ++ +r+++r  l   ll+++++++ + l+
  CTQ29353.1 194 MAA-WLTLVRQS--WRFLACVCLLQGAHAAYYGFSAIY-WQQAGYS-ASAVGYLWSLGVVAEVVIFALSKKVFRRFSARDLL---LLSAVCGLIRWGLM 284
                 999.999*****..977777777777************.*******.56777666666666666666777777887765555...55555555666666 PP

       MFS_1 295 avtssavllllvlvl.iGfglgfvfpsll 322
                 ++t+  + l+l+ +l +G++  +  +++ 
  CTQ29353.1 285 GWTTALPGLILAQILhCGTFTVCHLAAMR 313
                 66644444444444445555555555554 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.1e-06
       MFS_1  58 rfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGa.ilgpllggllasslgWrav 153
                 rf++r +lll++++ ++  + l+ +++ l+ l+l+  + +G ++ + ++a+ +++a+   ++e  r  +++sa +  G+ ++  +++g+l+++l  ++v
  CTQ29353.1 263 RFSARDLLLLSAVCGLIR-WGLMgWTTALPgLILAQILHCGTFTVCHLAAMRYIAARQ--GSEVIRLQAVYSAVAMGGSiAIMTVFAGFLYQHLH-QGV 357
                 788888888888888888.555555577774555555568888877777777777774..4589999999***9999997888********9996.9** PP

       MFS_1 154 fyilaivsllafv 166
                 f+++a+++l a+ 
  CTQ29353.1 358 FWVMALLTLPAMA 370
                 ********99854 PP

>> Nuc_H_symport  Nucleoside H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2  25.0   2.3e-14     1e-10       9     348 ..      11     336 ..       4     376 .. 0.78

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 2.3e-14
  Nuc_H_symport   9 vlsflqyfiWGaWlvklfsylsktlfaaaeiglvysslgiaailspilvg.iiaD..kflsaervlavlhligavvlflaaqvtefealflvlLvy 101
                    +  f  +f +G +l+    +l   + ++  ig+   +  +a  l+  l+   ++D  + + a rvla+l l+ a++++  ++    + l ++++ +
     CTQ29353.1  11 LSYFTYFFSYGIFLPFWSVWLAGNGLTPETIGILLGAGLVARFLGSLLIApRVSDpsRLIAALRVLALLTLLFALAFWAGSH---VAWLLAIIIGF 103
                    4456667889999999999***********************99987765379887799**************999887655...46789999*** PP

  Nuc_H_symport 102 slaymPtlaltnsiafanlrDvvtdfprirvlGtvGfilaslaflllvvsladlelsrlqlliaagvslllavyaltLPkiPakkkakqslkkllg 197
                     l + P + lt+++a +  + ++ d++r+r++G + f++   a+   +vsl d     l+l ++ ++s+ll++  l  P +    ++++  ++ +g
     CTQ29353.1 104 NLFFSPLVPLTDALANTWQKQITMDYGRVRLWGSIAFVIG-SALTGKLVSLFDYRAILLMLSLG-VASMLLGM--LLKPSVM--PQGESRQQQGAG 193
                    **************************************98.68889999998877665555554.45666664..5567665..367777788899 PP

  Nuc_H_symport 198 ldafvLlknkrllvfflvslllavvlqiyyvfanafLtevakivvklasillslsqvaeilfiLtlpfflkrfGikkvlllslvaaalrfalfayg 293
                    + a+  l  +    +  v ll +  ++ yy f+  + ++ + +       l sl+ vae++++ +   + +rf  +  llls v   +r++l+ + 
     CTQ29353.1 194 MAAWLTLVRQSWRFLACVCLLQG-AHAAYYGFSAIYWQQAG-YSASAVGYLWSLGVVAEVVIFALSKKVFRRFSARDLLLLSAVCGLIRWGLMGWT 287
                    99987776666665555555555.689999******99988.6777777788********99999999************************9998 PP

  Nuc_H_symport 294 addepvgvvlllLslivyGvaydffyitayvfvdkevpkdi.rasaqGlflllvnG 348
                         +++  l+L+ i++  ++   +++a  ++ ++  +++ r   q ++  +  G
     CTQ29353.1 288 -----TALPGLILAQILHCGTFTVCHLAAMRYIAARQGSEViR--LQAVYSAVAMG 336
                    .....44445666777898889888888888887766554414..34455555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 2949.02
//
Query:       CTQ29354.1  [L=277]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-18   65.3   0.0    7.4e-18   64.9   0.0    1.1  1  Aldose_epim  Aldose 1-epimerase
     0.0061   16.8   0.0      0.015   15.5   0.0    1.6  2  Lipocalin_9  Lipocalin-like domain
  ------ inclusion threshold ------
      0.027   14.6   0.0      0.075   13.2   0.0    1.8  1  DUF4384      Domain of unknown function (DUF4384)


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   1.2e-21   7.4e-18       5     298 ..       7     270 ..       3     272 .. 0.84

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 1.2e-21
                  EEETTEEEEEECTCTTEEEEEEETT.STEESB-B-STHHHHHHSC.CSSCEECSS-SEEETTEEEETTEEEECCCCBT.TTCEETBSGGGSB-EEEEE CS
  Aldose_epim   5 lkngaglsakislyGAtllslkvpdkeqrevllgsddaeeylkds.yfgatlgrvanRianGeFeldGkpyqlpqnee.gknplHGgargreWeveev 100
                  l+n+ +l++ +s++G+ ++sl   + +q++vl++ +        + +  ++  + anR+a+ +F + G+++ lp  ++ + + lHG  + ++W++ e 
   CTQ29354.1   7 LENA-HLRMCVSSLGGKVQSLFSRQ-YQAPVLYENPA-------GgM--FPMLPLANRVAGNRFIFHGQEIILPRHHAdEYFFLHGDGWLQRWDIIEY 93 
                  7785.7999************9998.789*****998.......223..899**************************999****************9 PP

                  EETTEEEEEEEEEEETCHCSTSEEEEEEEEEEETTEEEEEEEEEEESS.S-EEEEEEEEEEEETSSCTCTGGEEEEEEEEEEEECTTSGEEEEEEECT CS
  Aldose_epim 101 keddgvtvslvlkpdgeegypgdlevrvtytLnednelkieyeatndg.kptpfnltnHtYFnlsgesidshelqieadeylevdeeliptgelkdvk 197
                     ++++++l+ +++      +d+ ++++y+L  ++ l  e++ t  g  p  ++ ++H+ F+      +++++q++ ++y++  e+++p     + +
   CTQ29354.1  94 GA-EYCVLQLRRQHA----CGFDYLAQLRYQLLRNQ-LIAELTLTHYGeVPALYGCGFHPFFPFD----ERSKVQFQVSGYWPEGENHLPLN--WQGN 179
                  94.888888888444....4599999*******988.777777777777889*************....*********************55..4444 PP

                  TCCCCCCSSEEHCSSETEEEEEEEESSCSEEEEEETTTTEEEEEEEETTSSEEEEEECTTTTSEECCEEESSECTCETCCCECHHHT..-EEEHTTTE CS
  Aldose_epim 198 gtpfdfrqpkaigedlkglDhayllksklkaviidpdkksgiklevsttepalvvytgnflkkylsreglaletqmlpdepnhpefp..sivlkpGes 293
                   +++   + +++ged  +l+  y +++  +a       +  + +++ ++ p+l+++        +  + l+le+q+ p+ +++ + +  + vl +G +
   CTQ29354.1 180 LPDYANFSVAQFGEDR-WLNVGYSGWG-GRAR----VSNDVMNITILSQTPWLMLFRM------QGESFLCLEPQSHPVNAHNMDGQpgLRVLGAGDK 265
                  4556445888999997.**********.5444....455556689999999*****97......5567*************99776667889999988 PP

                  EEEEE CS
  Aldose_epim 294 ysaet 298
                   ++++
   CTQ29354.1 266 LNFSL 270
                  88776 PP

>> Lipocalin_9  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.6e-06     0.015      54     114 ..     154     211 ..     151     219 .. 0.89
   2 ?   -2.8   0.0       1.2   7.2e+03      17      29 ..     222     234 ..     213     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.6e-06
                  GGGEEEEEEEEEE-TTT--EEEE....EEEETTEEEEEEES-S--EEET--EEEEEEEEET CS
  Lipocalin_9  54 kediklepletwtspktgakyPvkwqvelpseeldltvepllkdqeldttipYWEGavkve 114
                  ++++++++ ++w   + ++ +P++wq +lp+ + +++v+ + +d +l+++ + W G+ +v+
   CTQ29354.1 154 RSKVQFQVSGYWP--EGENHLPLNWQGNLPDYA-NFSVAQFGEDRWLNVGYSGWGGRARVS 211
                  578999****998..78999**********877.************************993 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                  TS-EEEEEEEEET CS
  Lipocalin_9  17 dgsalmlfrlrkk 29 
                      lmlfr++++
   CTQ29354.1 222 QTPWLMLFRMQGE 234
                  5567999999754 PP

>> DUF4384  Domain of unknown function (DUF4384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.2e-05     0.075      22      62 ..      35      77 ..      16      83 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
     DUF4384 22 lfdidasgevtllfP..nrfdgdnfvkagetytiPseeaefef 62
                +++ +++g + +++P  nr++g+ f+ +g++ ++P   a  +f
  CTQ29354.1 35 VLYENPAGGMFPMLPlaNRVAGNRFIFHGQEIILPRHHADEYF 77
                78899**********99999***************88555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       201  (0.0112109); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2162.24
//
Query:       CTQ29355.1  [L=478]
Description: Sugar-proton symporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-111  373.1  21.7   2.3e-111  372.8  21.7    1.0  1  Sugar_tr  Sugar (and other) transporter
    3.3e-32  111.8  50.0    8.4e-22   77.6  20.9    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.8  21.7  2.6e-115  2.3e-111       1     450 [.      16     460 ..      16     462 .. 0.94

  Alignments for each domain:
  == domain 1  score: 372.8 bits;  conditional E-value: 2.6e-115
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 ++lvaa ggllfgYd  vig++  ++++++       ++  +    +sg+ +s++l+G+i+G+l++g+++d++GRk  l+ +avlf+++a  +a+a   
  CTQ29355.1  16 ICLVAACGGLLFGYDWVVIGGAKPFYEAWFSI-----TD-PA----QSGWAMSSALLGCIFGALISGWCADKLGRKLPLILSAVLFSASAWGTAVAS-- 102
                 59*************************55433.....22.33....369************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-..............TTHHHHHHHCCHHHHHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn..............adgwrillglqlvpalll 184
                  ++ +++v R++ G+g+Glas+l+P+yi+E++p+++Rg++v ++ql i++G l a+ ++l +++  +              + gwr+++g +lvpal++
  CTQ29355.1 103 -HFDMFVVYRIVGGVGIGLASALSPLYIAEVSPAEKRGRFVAVNQLTIVIGVLAAQLINLMIAEPVEpgatqqmivdswngQMGWRWMFGAELVPALAF 200
                 .*************************************************************88888899***********9***************** PP

                 HHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHH CS
    Sugar_tr 185 lilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifen 283
                 l+l++f+PESPr+l++ gk e+a++ l+++   + adr l e++++le+   ++k+s++ ll   +v+  ++ig+vl+ifqq +Gin+i++y+ +if +
  CTQ29355.1 201 LVLMFFVPESPRWLMKAGKPERARAALERIGSADYADRILREIAHTLEKD--NNKVSYGALLAP-QVKPIVIIGMVLAIFQQWCGINVIFNYAQEIFAS 296
                 **************************************************..457999999998.7899999*************************** PP

                 SS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSH CS
    Sugar_tr 284 lglsks..llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfp 380
                 +g++    l   + +gvvn v+t++a++lvd++GRR+l+llGa+g ++  v+++    ++  +   ++  ++ +++  ia++al+++pv wvl++E+fp
  CTQ29355.1 297 AGFDINstLKSIVATGVVNLVFTIAALPLVDKIGRRKLMLLGASGLTLIYVLIA---GAYAMG--IMGWPVLLLVLAAIAIYALTLAPVTWVLLAEIFP 390
                 ***988766777779**************************************8...444444..245666677777899******************* PP

                 TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGG CS
    Sugar_tr 381 qsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeiee 450
                 ++vR++a+++ + + w+a fl +++fp +   +g++++fl++++++++++++++  vpetkg tle +ee
  CTQ29355.1 391 NRVRGLAMSLGTLALWIACFLLTYTFPLLNAGLGAAGSFLLYGVICAAGYLYILRNVPETKGITLEALEE 460
                 ******************************************************************9987 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6  20.9   9.4e-26   8.4e-22       2     226 ..      21     286 ..      20     290 .. 0.82
   2 !   39.3  25.1     4e-14   3.5e-10       2     187 ..     269     458 ..     268     474 .. 0.79

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 9.4e-26
       MFS_1   2 llaaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 +++++l ++++ ++g a p      + + +p++ g++++   lg+++++l+ G+ +d++Gr+  l+l+++lf+++++  ++ +s++ +++v r++ G+g
  CTQ29355.1  21 ACGGLLFGYDWVVIGGAKPFyEAWFSIT-DPAQSGWAMSSALLGCIFGALISGWCADKLGRKLPLILSAVLFSASAWGTAV-ASHFdMFVVYRIVGGVG 117
                 6899999999999999999555555555.999*******************************************666665.88899************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.................Wravfyilaivsllafvlfllllpeepperk 180
                  g++ +++  +ia+++p e+rgr +++ ++++ +G++ + l+  ++a+ +                  Wr++f +  + +l ++v   l +++++++r+
  CTQ29355.1 118 IGLASALSPLYIAEVSPAEKRGRFVAVNQLTIVIGVLAAQLINLMIAEPVEpgatqqmivdswngqmgWRWMFGAELVPALAFLV---LMFFVPESPRW 213
                 ********************************************99988889999999999999*******************99...67777777777 PP

       MFS_1 181 rkspkeee........................kgtgpaplvpawkallkdpvlw....illialllfffgfsgl 226
                   +  + e                           +  + v+ ++all+++v       +++a++  ++g++ +
  CTQ29355.1 214 LMKAGKPEraraalerigsadyadrilreiahTLEKDNNKVS-YGALLAPQVKPiviiGMVLAIFQQWCGINVI 286
                 777777766888888888888877776666654444455555.8888888855322223444444445555544 PP

  == domain 2  score: 39.3 bits;  conditional E-value: 4e-14
       MFS_1   2 llaaflsalarsi....lgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllll.fa...sslwlllv 90 
                 +++ +l++++ ++    ++  + + + +  + i+ +  ++++t+  ++ +v+++ + +l+d++Grr+++llg+ ++ l  +l++  +a    ++++ll+
  CTQ29355.1 269 IIGMVLAIFQQWCginvIFNYAQEiFASAGFDINSTLKSIVATG--VVNLVFTIAALPLVDKIGRRKLMLLGASGLTLIyVLIAGaYAmgiMGWPVLLL 365
                 56677777777776332333334445555577888888887776..778******************99999999999955555575566788887777 PP

       MFS_1  91 lrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 + +  ++ a +l+p+  +l+a++fp + rg+a++l +++  ++  l     +ll + lg  ++f++ +++++ +     l+++++ pe k  + + +
  CTQ29355.1 366 VLAAIAIYALTLAPVTWVLLAEIFPNRVRGLAMSLGTLALWIACFLLTYTFPLLNAGLGAAGSFLLYGVICAAG--Y--LYILRNVPETKGITLEAL 458
                 7777777778****************************************************************..5..677777777766655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3506.64
//
Query:       CTQ29358.1  [L=398]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-36  125.5   0.0    3.6e-36  125.1   0.0    1.1  1  ROK          ROK family
    6.8e-05   22.3   0.3    0.00017   21.1   0.3    1.6  1  HTH_24       Winged helix-turn-helix DNA-binding
     0.0012   18.6   0.0     0.0027   17.5   0.0    1.5  1  MarR_2       MarR family
     0.0021   18.0   0.1     0.0045   16.9   0.1    1.5  1  HTH_Crp_2    Crp-like helix-turn-helix domain
     0.0035   17.4   0.1     0.0082   16.2   0.1    1.6  1  HTH_20       Helix-turn-helix domain
     0.0038   17.1   0.0     0.0077   16.1   0.0    1.5  1  MarR         MarR family
  ------ inclusion threshold ------
      0.024   14.6   0.1      0.085   12.8   0.1    1.9  1  HTH_37       Helix-turn-helix domain
      0.025   14.4   0.1      0.059   13.2   0.1    1.6  1  HTH_IclR     IclR helix-turn-helix domain
      0.033   13.9   0.1        1.9    8.2   0.0    2.5  2  UPF0175      Uncharacterised protein family (UPF0175)
       0.05   14.2   0.0       0.13   12.9   0.0    1.7  1  Phage_rep_O  Bacteriophage replication protein O
       0.08   12.8   0.3       0.18   11.7   0.3    1.6  1  HTH_5        Bacterial regulatory protein, arsR family


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   0.0   2.2e-39   3.6e-36       5     257 ..      88     352 ..      84     376 .. 0.86

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 2.2e-39
                 EE-SSEEEEEEEETTS-EEEEEEE.EEHCCHHCCHHHHHHHHHHCCCHC.CHTEEEEEEEEESSEEETTCCEBSSGGCGCC.CCTTHHHHHHHHHTS-E CS
         ROK   5 diGgtkialalvdeegeilarekv.etptetteetlvdaiaelvdeaer.kadeliavgigspGlisdksgkivstpnitw.enfdlvekleerlnvpv 100
                 +i  t i+  l d+    ++ ++  +  +  t+++l +ai e   + +r + ++ i +++g+ G +++  g   ++p+ +w   ++++  leerl+v v
  CTQ29358.1  88 NITPTSIEYQLADARLLAVDGHQHlPV-NAPTPQALLEAIVECWRHIHRrYPQHSINLALGVHGQVDPITGVSQTMPQARWkTPIEIKYLLEERLGVQV 185
                 556677777777777777776666233.3344556667777777766541566778**********8888888899*****999*************** PP

                 EEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-TTS-B-TTS-BSBHHHCCSHHHHHHCHTC......... CS
         ROK 101 evenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqldpegekcgCGnqgClEtlasgralekraqq......... 190
                 +v+nD   +alaE++ + + +++++ ++ v  G+G  ++in ++++G+   +g +GH+ ++p+g  c CG+ gClEt+as  al+k+a+          
  CTQ29358.1 186 RVDNDCVMLALAEKW-QHQGTQQDFCVINVDYGIGSSFVINDHIYRGSLYGSGQIGHTIVNPDGNACDCGRYGCLETVASLSALKKQARMwlktqpeat 283
                 **************9.999999***************************99************************************999999****** PP

                 .CGTTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHH.HHHHHH CS
         ROK 191 .kgekleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadkll.eairkl 257
                  ++e+l+ +++i++ ++gd +  + v++ a++++ ++ + +n+++++ i l G   ++ +   e+i k+
  CTQ29358.1 284 lAPEQLTTASLIEAWKEGDVQIRAWVDNAANAIGLSLYNFLNILNINQIWLYGRSCAFGEQWlESIVKQ 352
                 *************************************************99886655544333666555 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.3     1e-07   0.00017       9      47 ..      20      58 ..      20      58 .. 0.96

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1e-07
      HTH_24  9 LelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                L+ L ++  +s ++L++ +glS+++v+  l +L +eGlI
  CTQ29358.1 20 LSHLWREKQLSKSQLSQLTGLSIPAVSNILAELLSEGLI 58
                678999999*****************************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.7e-06    0.0027      16      56 ..      25      63 ..      17      69 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.7e-06
                CTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 16 rrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                r+    l+ ++l + +gls +avs+il++L + GL+  ++ 
  CTQ29358.1 25 REKQ--LSKSQLSQLTGLSIPAVSNILAELLSEGLIGHSTE 63
                5555..899***************************87765 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   2.8e-06    0.0045      21      52 ..      28      59 ..      12      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.8e-06
                EHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2 21 pltqeelAsmlGltretvsrilseLkreglis 52
                +l++ +l+++ Gl+   vs il+eL  egli 
  CTQ29358.1 28 QLSKSQLSQLTGLSIPAVSNILAELLSEGLIG 59
                69****************************97 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1     5e-06    0.0082      15      55 ..      19      59 ..      18      64 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5e-06
                HHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEE CS
      HTH_20 15 ilraLaraegltaselaerldlskntlsyHLrvLeeagLve 55
                +l++L+r++ l+ s+l ++ +ls   +s+ L++L + gL+ 
  CTQ29358.1 19 FLSHLWREKQLSKSQLSQLTGLSIPAVSNILAELLSEGLIG 59
                79*************************************95 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.7e-06    0.0077       9      57 ..      20      68 ..      19      70 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.7e-06
                HHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTT CS
        MarR  9 LrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrR 57
                L  l+++ +ls s+L    g+s+++v+++l +L  +Gli  s  +  +R
  CTQ29358.1 20 LSHLWREKQLSKSQLSQLTGLSIPAVSNILAELLSEGLIGHSTEHLSKR 68
                6789***********************************7666655555 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   5.2e-05     0.085      15      54 ..       9      51 ..       3      55 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.2e-05
                HHHHHHHH...HHHHHHHCT--HHHHHHHHT--HHHHHHHHTT CS
      HTH_37 15 aKaqlala...iaeliekrelsqseaaqllgiaqPkvsrllrg 54
                a++++a +   +  l ++++ls+s++ ql+g + P vs++l +
  CTQ29358.1  9 ARVRQANKsifLSHLWREKQLSKSQLSQLTGLSIPAVSNILAE 51
                55555555666888999**********************9965 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   3.6e-05     0.059      17      48 ..      28      58 ..      19      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.6e-05
                SS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR 17 qeltlselArrtglpkStvhRlLqtLvelGyv 48
                q l+ s+l++ tgl+ ++v+++L+ L  +G++
  CTQ29358.1 28 Q-LSKSQLSQLTGLSIPAVSNILAELLSEGLI 58
                4.7889************************96 PP

>> UPF0175  Uncharacterised protein family (UPF0175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0012       1.9      21      56 ..      16      51 ..       2      52 .. 0.83
   2 ?    2.7   0.0     0.062     1e+02      38      59 ..     311     332 ..     304     336 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0012
     UPF0175 21 rialAvklYeegrlSlgkAaelaglsrveflelLar 56
                +     +l +e++lS ++ ++l gls   + ++La+
  CTQ29358.1 16 KSIFLSHLWREKQLSKSQLSQLTGLSIPAVSNILAE 51
                555666899********************9999986 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.062
     UPF0175  38 kAaelaglsrveflelLarrgi 59 
                  Aa+  gls ++fl++L+ ++i
  CTQ29358.1 311 NAANAIGLSLYNFLNILNINQI 332
                 59999************98888 PP

>> Phage_rep_O  Bacteriophage replication protein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.9e-05      0.13      46      89 ..      25      71 ..       8      75 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.9e-05
  Phage_rep_O 46 ksdwisnsqlveltgisrtkvskalkeLirekviikeg...rkvgvn 89
                 +++++s+sql++ltg+s  +vs+ l eL +e+ i       +k+gvn
   CTQ29358.1 25 REKQLSKSQLSQLTGLSIPAVSNILAELLSEGLIGHSTehlSKRGVN 71
                 67899*****************************8877678888888 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   0.00011      0.18      13      45 ..      26      58 ..      20      59 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                TSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5 13 egelcvcelaeelglsqstvShHLkkLreaGLV 45
                e++l+ ++l+  +gls ++vS  L+ L  +GL+
  CTQ29358.1 26 EKQLSKSQLSQLTGLSIPAVSNILAELLSEGLI 58
                577888*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3065.09
//
Query:       CTQ29359.1  [L=155]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-17   61.4  12.9    1.6e-16   60.7  12.9    1.4  1  DoxX      DoxX
    9.4e-09   35.2   5.4    2.4e-08   33.9   5.4    1.7  1  SURF4     SURF4 family
  ------ inclusion threshold ------
        1.1    9.1  10.6      0.078   12.8   6.0    1.4  2  DUF2062   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7  12.9   2.6e-20   1.6e-16       1      84 [.      31     112 ..      31     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 2.6e-20
        DoxX   1 lllllRlllgvlfiahGlqkltgfglegtaaslaalglpppellaylaalvElvgglllllGlltRlaAlalavtllvatltvh 84 
                 lll++R+++ +lfi+ G+ kl   g++gt++++aa g p+p+l+a+ a+++E+ +++l++lG++tR  A+++++++l+++++ h
  CTQ29359.1  31 LLLIARIAVVILFILFGYPKLL--GFDGTVQYMAASGAPMPTLAAIIAVIMEVPAAILIVLGFFTRPLAVIFIFYTLGTAVIGH 112
                 69********************..9*******************************************************9988 PP

>> SURF4  SURF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   5.4   4.1e-12   2.4e-08     177     262 ..      71     154 ..       2     155 .] 0.81

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 4.1e-12
       SURF4 177 ftrvlltiigvaliilvviGfktklaalvLvllLfvlnlvlnafWtipkekelrdflkYdffqtlsviGGLLlvvatGpGelsvDe 262
                    ++  i+ v + il+v+Gf t+  a++++ +     ++  ++W +  ++ l +++  +f++++s+ G +Ll+  tGpG +s+D 
  CTQ29359.1  71 LAAIIAVIMEVPAAILIVLGFFTRPLAVIFIFYTLGTAVIGHHYWDMTGDAVLPNMI--NFWKNVSIAGAFLLLAVTGPGAISLDR 154
                 4578889999999*****************************************887..79***********************95 PP

>> DUF2062  Uncharacterized protein conserved in bacteria (DUF2062)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       1.6   9.5e+03     121     128 ..      37      44 ..      28      50 .. 0.46
   2 ?   12.8   6.0   1.3e-05     0.078      43     117 ..      71     134 ..      62     151 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.6
     DUF2062 121 lilglila 128
                 + + +++ 
  CTQ29359.1  37 IAVVILFI 44 
                 22233333 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.3e-05
     DUF2062  43 laallalllrvnlpaavagtwisnPltlppiyylayklGalllgeeaealslseleelglewlleslleiglpll 117
                 laa++a+++ v   + +++ +++ Pl +++i+   y lG+ ++g++  ++        + + +l ++ ++++ + 
  CTQ29359.1  71 LAAIIAVIMEVPAAILIVLGFFTRPLAVIFIF---YTLGTAVIGHHYWDM--------TGDAVLPNMINFWKNVS 134
                 899******99999999999**********99...999999966554443........33333444444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1168.59
//
Query:       CTQ29360.1  [L=417]
Description: serine hydroxymethyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-189  630.3   0.4   1.1e-189  630.1   0.4    1.0  1  SHMT             Serine hydroxymethyltransferase
      3e-09   36.5   0.0    4.2e-09   36.1   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
    0.00042   19.7   0.0      0.001   18.4   0.0    1.5  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00074   18.4   0.0     0.0024   16.7   0.0    1.7  1  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain


Domain annotation for each model (and alignments):
>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  630.1   0.4  2.6e-193  1.1e-189       1     399 []       8     386 ..       8     386 .. 0.99

  Alignments for each domain:
  == domain 1  score: 630.1 bits;  conditional E-value: 2.6e-193
                 HHHHTHHHHHHHHHHHHHHHHSEE-STT-----HHHHHHHTSGGGG----EETTEESSST-HHHHHHHHHHHHHHHHHCT-STTTEEEE---SSHHHHH CS
        SHMT   1 leesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGcefvdeveelaqdrakelfkldpakwgvnvqplsGsqan 99 
                 ++++d+e+++++++ek rq+e+ieliasen+ts++v++a+Gs+ltnkyaeGyPGkryyGGce+vd+ve+la+drakelf++d    ++nvqp+sGsqan
  CTQ29360.1   8 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHSGSQAN 102
                 5789******************************************************************************....************* PP

                 HHHHHHHT-TT-EEEEESCTTTSTGGGT-BTSS-B-SHHHHHSEEEEE-B-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-S---HHHHHHHHHHTT- CS
        SHMT 100 lavytallepgdrilgldladGGhlthGakveskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevga 198
                 +avytall+pgd++lg++la+GGhlthG++v++     s+kl+++++y++d e g idyd++ k+a+e+kPk+i++G+says ++d+a++reiad++ga
  CTQ29360.1 103 FAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNF-----SGKLYNIIPYGID-ESGKIDYDDMAKQAQEHKPKMIIGGFSAYSGIVDWAKMREIADSIGA 195
                 *********************************.....*************.99********************************************* PP

                 EEEEE-GGGHHHHHTTSS--GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEEETTTEEEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHCTSHH CS
        SHMT 199 yllvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvdktgkevleelekkinsavfPglqGGPlnhviaakavalkealepe 297
                 yl+vdmah+aGl+aagv+p+P+++a+vvtttthktl+Gprgglil++             +eel+kk+nsavfP+ qGGPl+hviaakavalkea+epe
  CTQ29360.1 196 YLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAK-----------GGSEELYKKLNSAVFPSAQGGPLMHVIAAKAVALKEAMEPE 283
                 **********************************************9...........4568************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTS.STTTT-SEEEEESHHHHHTT--HHHHHHH CS
        SHMT 298 fkvyqkqvlknakalaealkekgyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgd.ksalvtsGlrlGtpaltsrgfkeedlekv 395
                 fkvyq+qv knaka++e++ ++gyk+vsgGt+nhl+l+dl++k+l+Gk+a+++l+++nit+nkn+vP+d ks++vtsG+r+G+pa+t+rgfke++++++
  CTQ29360.1 284 FKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDpKSPFVTSGIRIGSPAVTRRGFKEAEVKEL 382
                 *************************************************************************************************** PP

                 HHHH CS
        SHMT 396 akfi 399
                 a ++
  CTQ29360.1 383 AGWM 386
                 9986 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   9.3e-13   4.2e-09      55     353 ..      84     371 ..      32     378 .. 0.71

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 9.3e-13
                    HHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEES...S-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTE CS
  Aminotran_1_2  55 kflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdp...tyasyknilrlsggevvryplyseedfhldlealeealkeapegnk 147
                    +++g       +   +v+  sG++a+ ++ ++ll+  pgd +l  ++    +  +   ++ sg     +p+   e+ ++d +++ ++ +   e+++
     CTQ29360.1  84 ELFG------ADYA-NVQPHSGSQANFAVYTALLQ--PGDTVLGMNLaqgGHLTHGSPVNFSGKLYNIIPYGIDESGKIDYDDMAKQAQ---EHKP 167
                    4555......5566.***************99998..******7765222788888888888877666666666************555...5666 PP

                    TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHH CS
  Aminotran_1_2 148 ktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsql 243
                        +++ + +  +G v    ++ k+ ++a++ +++lfvD+a+ ++   +     +++n  ++ +   v +  +   laG R G il++    +  
     CTQ29360.1 168 ---KMIIGGFSAYSGIV----DWAKMREIADSIGAYLFVDMAHVAGLIAA----GVYPNPVPHAH---VVTTTTHKTLAGPRGGLILAKGGSEELY 249
                    ...67789999999977....77777777*******************82....23555555555...444445556788889*****99888888 PP

                    HHHHHHHTSSHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHSTEEEECCS..CSSEEEEEETHH.CHHHHHHHHHHTCTEEE CS
  Aminotran_1_2 244 rklsrpflsssllqaavaaalsdallkqs....eleemrqrlqkrrkelrdeLaelglkvlasq..sgmflltdlsae.takelskkLleevgvyv 332
                    +kl +++  s+++ ++   ++ +a   ++    e++  +q+++k++k +++ + + g kv++    +++fll ++++  t ke+  +L    ++ v
     CTQ29360.1 250 KKLNSAVFPSAQGGPLMHVIAAKAVALKEamepEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGteNHLFLLDLVDKNlTGKEADAALGRA-NITV 344
                    888888877777766655555444444444667********************999777775433399****9999997555555555544.7777 PP

                    EEGGGGTS......TTEEEEECTTS-H CS
  Aminotran_1_2 333 tpgtsftv......pgrlRitvAglte 353
                     +++ +        ++ +Ri  +++t+
     CTQ29360.1 345 NKNSVPNDpkspfvTSGIRIGSPAVTR 371
                    777666655555555557777666665 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.3e-07     0.001      38     132 ..      79     171 ..      49     206 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.3e-07
                      HHHHHHHTT-SEE.EEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-..EBTTTBE-HHHHHHHS--S-TTS-EE CS
  Beta_elim_lyase  38 edavaelfgkeaa.lfvpqGtaAnsillkillqrgeevivtepahihfdetgaiaelagvklrdlk..nkeaGkmdlekleaaikevgaheeki 128
                       d+++elfg+++a +  ++G +An   +++llq+g+ v+  + a +   + g ++ ++g   + ++  ++e Gk+d +++++  +e   h  k+
       CTQ29360.1  79 IDRAKELFGADYAnVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIIPygIDESGKIDYDDMAKQAQE---H--KP 167
                      378999*****6626789***************************************997443333448999*********99998...3..45 PP

                      EEEE CS
  Beta_elim_lyase 129 klis 132
                      k+i+
       CTQ29360.1 168 KMII 171
                      5665 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.3e-07    0.0024      73     304 ..      80     291 ..      74     310 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.3e-07
                 HHHHHHCT-SEEEEESSHHHHHHHHHHHHH--TTEEEEEESS--HHHHHHHHHS-EEEEEE--E.B-TTS-BE---GGGGSHHHHHHHHHHSTTTGSES CS
    OKR_DC_1  73 kyaarvfgadksyfvvnGTsssnkvvlnavltpgdlvlvdRNcHKSiehalvlsgatPvylepe.rnalgiiggidlkefeeetlkekikevpdakapr 170
                 + a ++fgad + +  +  s +n +v +a+l+pgd+vl        ++++  l+   Pv ++ +  n   i+ gid+     +     +++++++++p+
  CTQ29360.1  80 DRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGM-----NLAQGGHLTHGSPVNFSGKlYN--IIPYGIDE---SGKIDYDDMAKQAQEHKPK 168
                 557789****9999999999****************9953.....467888899999**99987333..26678887...2223335677777778888 PP

                 EEEEESS-TTSEEE-HHHHHHHHTTSESEEEEE-TT-TTGGGSGGGTTSSSSSSS-BTTBEEEEEEEHCCCCS--TT-EEEEEES-BT--HHHHHHHHH CS
    OKR_DC_1 171 lavitnsTYdGvlynakeivdkleklsdrilfDeAwvgyeqfiplyadaskllaenendpgilvtqSvHKllaalsqaSlihvkeelivneerlneafm 269
                 +++   s Y G++ +  ++ + +++++ ++++D A+v+      +y + ++           +vt+ +HK+la+  ++ li  k++     ++ln+a  
  CTQ29360.1 169 MIIGGFSAYSGIV-DWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAH--------VVTTTTHKTLAGP-RGGLILAKGGSEELYKKLNSAVF 257
                 88999******76.77778999999999*********99888888777776543........6999*******96.56666667776777899****** PP

                 HTS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHH CS
    OKR_DC_1 270 mhattSpsYpllAsldvaakmlegesgrrlleevv 304
                   a   p+  ++A+  va k    e + ++ ++ v
  CTQ29360.1 258 PSAQGGPLMHVIAAKAVALKEAM-EPEFKVYQQQV 291
                 *****************999874.44444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3072.42
//
Query:       CTQ29361.1  [L=396]
Description: fused nitric oxide dioxygenase; dihydropteridine reductase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-17   63.2   0.0    5.6e-17   62.4   0.0    1.5  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    6.8e-15   55.6   0.0    1.5e-14   54.4   0.0    1.6  1  Globin         Globin
    7.1e-09   35.9   0.0    1.5e-08   34.9   0.0    1.5  1  FAD_binding_6  Oxidoreductase FAD-binding domain
     0.0004   20.3   0.0    0.00063   19.7   0.0    1.3  1  Protoglobin    Protoglobin
     0.0062   16.2   0.0      0.021   14.5   0.0    1.8  2  DUF1987        Domain of unknown function (DUF1987)
     0.0085   14.9   0.0      0.012   14.4   0.0    1.1  1  BshC           Bacillithiol biosynthesis BshC


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   1.9e-20   5.6e-17       1     108 [.     264     372 ..     264     373 .. 0.91

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 1.9e-20
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTT.EEEEEEE...ESSCTTTSSSEESSHHHHHHHHHHHHSSTT CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpg.rlkvvav...vsreeagweggkgrvqdalleellslkkee 92 
                    +++gG+G +P++++l+a+++   ++++v++++++++ + +++ +e+++l ++lp  + +v++    + +++ag  +++g ++ a + + +   +++
     CTQ29361.1 264 LLSGGVGQTPMLAMLDALAKS-GHQGQVNWFHAAENGDVHAFADEVKALGAALPAfTSHVWYRtptEADRQAGRFDSEGLMDLAAVADNIR--DPQ 356
                    789*****************8.99*******************************966777665877888888899999999999999888..*** PP

                    EEEEEECSHHHHHHHH CS
  NAD_binding_1  93 thvyvCGppgMikavr 108
                    +++y+CGp +++++++
     CTQ29361.1 357 MQYYLCGPVAFMQFAA 372
                    *************986 PP

>> Globin  Globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   5.2e-18   1.5e-14       2     109 ..       7     102 ..       6     103 .. 0.96

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 5.2e-18
                 HHHHHHHHHHHHTHHHHHHHHHHHHHHHHSGGGGGGSTTTTTTT-HHHHCTSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCSTT--HH CS
      Globin   2 kalvkaswekvkanaeelgaeilkrlFkaypdtkklFkkfgdlssaedlksspkfkahakkvlaalgeavknldndealkaalkklaarHaergkvdpa 100
                 +a vka+ + + ++ ++l+a+++ r+F+++p++k++F+ +          s+++  ++ +++++a+  +++n+dn +al +a++k+a++H++++ ++p+
  CTQ29361.1   7 IATVKATIPLLVETGPKLTAHFYDRMFAHNPELKEIFN-M----------SNQRNGDQREALFNAIAAYASNIDNLPALLPAVEKIAQKHTSFQ-IKPE 93 
                 689***********************************.6..........68999***************************************.**** PP

                 HHHHHHHHH CS
      Globin 101 nFklfgeal 109
                 +++++g +l
  CTQ29361.1  94 QYNIVGSHL 102
                 *****9987 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   4.9e-12   1.5e-08       3      97 ..     156     252 ..     154     253 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 4.9e-12
                    EEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC..ETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHH.HCS-TT-EEEEEEEE- CS
  FAD_binding_6   3 kltekeevsedtrifrfklpsekqklglpvGqhvflrlk..ikgeaviRsYtpissenekGelellvkvypgGkmsqaL.delkigdtleikGPlG 95 
                    ++++k+  s+ +  f+++  + + + ++ +Gq++++ lk    + + iR+Y+++ + + kG+  + vk+ +gG++s+ L +++  gd++ + +P G
     CTQ29361.1 156 RIVKKTPRSQLITSFELEPVDGQPVADYQPGQYLAIWLKpeGFEYQEIRQYSLTRKADGKGYR-IAVKREEGGQVSSWLhNHASEGDVVYLAAPAG 250
                    5677777788888899998899999*************954446789*****99999***986.***************777************** PP

                    SE CS
  FAD_binding_6  96 kf 97 
                     f
     CTQ29361.1 251 DF 252
                    98 PP

>> Protoglobin  Protoglobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.1e-07   0.00063      14     114 ..       2     105 ..       1     119 [. 0.88

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.1e-07
                  -SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCTS.HHHHHHHCH.....HCHHHHHHHHHHHHHHHCCCSSCCHHHHHHHHHHHHHHCHCT--HHHHH CS
  Protoglobin  14 lteedlaaLralapliealipavvdafYekllsf.petarifet.....ssqierlkdflksyllklfsgpfdsayveyldkvGkmhtrlgleprwyi 105
                  l+++++a+++a  pl+ +  p+++  fY+++  + pe+++if+       +q+e l +  ++y +++   +  +a + +++k+++ ht  +++p +y+
   CTQ29361.1   2 LDAQTIATVKATIPLLVETGPKLTAHFYDRMFAHnPELKEIFNMsnqrnGDQREALFNAIAAYASNI---DNLPALLPAVEKIAQKHTSFQIKPEQYN 96 
                  78999***************************999********999888888888888888888888...8899*********************998 PP

                  HCHHHHHHH CS
  Protoglobin 106 aalglvqev 114
                     + ++++
   CTQ29361.1  97 IVGSHLLAT 105
                  766555555 PP

>> DUF1987  Domain of unknown function (DUF1987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.1   3.2e+03      50      73 ..      83     106 ..      58     120 .. 0.59
   2 !   14.5   0.0   7.1e-06     0.021      73     109 ..     274     310 ..     271     320 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
     DUF1987  50 kkkievnlkLsYfntssskalldl 73 
                 +k++++++k + +n   s +l  l
  CTQ29361.1  83 QKHTSFQIKPEQYNIVGSHLLATL 106
                 366666666666666655555544 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 7.1e-06
     DUF1987  73 llelLeeaaekgkkvevnWyydeededmlelgeefke 109
                 +l +L+++a++g++ +vnW++  e+ d+  ++ e k+
  CTQ29361.1 274 MLAMLDALAKSGHQGQVNWFHAAENGDVHAFADEVKA 310
                 899**************************99999876 PP

>> BshC  Bacillithiol biosynthesis BshC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.9e-06     0.012      27     104 ..      25     102 ..       5     106 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.9e-06
                 GGGT-SS-TTSTTHHHHHHHHHHTS---.HHHHHHHHHHHHGGG-.-HHHHHHHHHTTSTT-EEEEEEE---GGG-BH CS
        BshC  27 lkkfyeyrfpkeeafekrieelkekskskreaLveaLkeqykeleasektkeniekLkeentvtvvtGqQlgLftGpL 104
                 +++fy+  f ++ + ++ ++  ++++ ++reaL +a+ ++ +++++ ++ + ++ek+++++t   +   Q ++++ +L
  CTQ29361.1  25 TAHFYDRMFAHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIDNLPALLPAVEKIAQKHTSFQIKPEQYNIVGSHL 102
                 6789**9999**********999998888****************88***************9999999999987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3163.36
//
Query:       CTQ29362.1  [L=112]
Description: regulatory protein, P-II 2, for nitrogen assimilation by glutamine synthetase, regulates GlnL (NRII) and GlnE (ATase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-44  149.8   4.0    3.3e-44  149.7   4.0    1.0  1  P-II           Nitrogen regulatory protein P-II
  ------ inclusion threshold ------
      0.093   12.8   0.1       0.12   12.4   0.1    1.2  1  Nit_Regul_Hom  Uncharacterized protein, homolog of nitrogen r


Domain annotation for each model (and alignments):
>> P-II  Nitrogen regulatory protein P-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   4.0   3.6e-48   3.3e-44       1     102 []       4     105 ..       4     105 .. 0.99

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 3.6e-48
                 EEEEEEGGGHHHHHHHHHHTTGGCEEEEEEEEEESTCCEEEECTTEEEEEEEEEEEEEEEEEEGGGHHHHHHHHHHHH-SSSTTSEEEEEEEESEEEET CS
        P-II   1 ieaiirpekleevkeaLekagvkgltvtevkGrGkqkghtelyrgaeyevellpkvkleivvsdedvekvveaiikaaktgeiGDGkiFvlpveeviri 99 
                 i aii+p+kl++v+eaL+++g++g+tvtevkG+G+qkghtelyrgaey+v++lpkvk+eivv+d+ v+++v++ii++a+tg+iGDGkiFv++v +viri
  CTQ29362.1   4 IDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVKIEIVVTDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRI 102
                 89************************************************************************************************* PP

                 TTT CS
        P-II 100 rtg 102
                 rtg
  CTQ29362.1 103 RTG 105
                 **8 PP

>> Nit_Regul_Hom  Uncharacterized protein, homolog of nitrogen regulatory protein PII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.3e-05      0.12      14      83 ..      13      81 ..       2     103 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.3e-05
  Nit_Regul_Hom 14 lgkvinalseagitGfylieYkGlsPqewkgflleedpesaikiikdlseeavlintvvdeekvekikee 83
                   l  v  al+e+gitG  ++e kG+  q+ +  +l    e  ++++ ++  e v+   +vd+   + i+++
     CTQ29362.1 13 LDDVREALAEVGITGMTVTEVKGFGRQKGH-TELYRGAEYMVDFLPKVKIEIVVTDDIVDTCVDTIIRTA 81
                   6667789*****************988754.456677888888888888888887777776443334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 971.24
//
Query:       CTQ29363.1  [L=445]
Description: putative DNA-binding response regulator in two-component system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-72  242.6   0.0    9.1e-72  240.2   0.0    1.9  2  Sigma54_activat  Sigma-54 interaction domain
    7.4e-30  103.4   0.0    1.5e-29  102.5   0.0    1.5  1  Response_reg     Response regulator receiver domain
    4.6e-24   85.1   0.0    3.8e-23   82.2   0.0    2.5  2  Sigma54_activ_2  Sigma-54 interaction domain
    1.6e-06   28.1   0.0      3e-06   27.3   0.0    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
    8.1e-05   23.1   0.0    0.00018   22.0   0.0    1.6  1  AAA              ATPase family associated with various cellul
     0.0086   16.2   0.0      0.018   15.2   0.0    1.6  1  AAA_2            AAA domain (Cdc48 subfamily)
  ------ inclusion threshold ------
      0.011   15.5   0.2      0.032   14.0   0.2    1.9  1  HTH_8            Bacterial regulatory protein, Fis family
      0.028   13.8   0.0        7.8    5.8   0.0    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.054   13.2   1.3       0.13   12.0   0.1    2.3  2  IDEAL            IDEAL domain
      0.068   12.9   0.0       0.19   11.4   0.0    1.8  1  UPF0175          Uncharacterised protein family (UPF0175)
      0.074   12.2   0.0       0.14   11.3   0.0    1.4  1  TIP49            TIP49 P-loop domain
       0.11   12.8   0.1       0.39   11.1   0.1    2.1  2  AAA_16           AAA ATPase domain
       0.12   11.9   0.0        0.3   10.6   0.0    1.6  1  Glycos_transf_1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.2   0.0   6.6e-75   9.1e-72       1     167 [.     137     303 ..     137     304 .. 0.98
   2 ?   -0.2   0.0      0.53   7.3e+02      37      69 ..     317     349 ..     316     355 .. 0.85

  Alignments for each domain:
  == domain 1  score: 240.2 bits;  conditional E-value: 6.6e-75
                      ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTT CS
  Sigma54_activat   1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadg 94 
                      ++++s+ + +lleq+ +va++d+svli+G+sGtGKe++a+aih+as+r++kpfva+nc+a+pe+lleseLFGh++GaFtGA ++++Glf++a+g
       CTQ29363.1 137 IVTRSPLMLRLLEQAGMVAQSDVSVLINGQSGTGKEIVAQAIHNASPRHDKPFVAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 230
                      5788999*************************************************************************************** PP

                      SEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEE CS
  Sigma54_activat  95 GtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnviei 167
                      GtlfLDeig++p++lQ+kLlrvlqe++v+++Gs++ i+++vrii+at++dl +a+++g+fredL+yrlnv+++
       CTQ29363.1 231 GTLFLDEIGDMPVALQVKLLRVLQERKVRPLGSNRDIEINVRIISATHRDLPKAMARGEFREDLFYRLNVVNL 303
                      **********************************************************************987 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.53
                      HHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHH CS
  Sigma54_activat  37 llaraiheaskrkekpfvavncaaipeellese 69 
                      lla+++ ++s  ++kpfv+   ++  ++l++++
       CTQ29363.1 317 LLANHLLRQSADRHKPFVRAFSSDAMKRLMAAK 349
                      68999999**********999999888888776 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   1.1e-32   1.5e-29       2     111 ..      10     118 ..       9     119 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 1.1e-32
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEE CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddfl 98 
                   l+vdDdp +++ll   l +egy +v +ae+g eal+ l +ekvdl++ D++m++mdGl+l++ei++ +p +pviiltah++ +dav+a + g++ fl
    CTQ29363.1  10 LLVDDDPGLLKLLGMRLVSEGY-SVVTAESGPEALRVLGREKVDLVISDLRMDEMDGLQLFSEIQKGHPGMPVIILTAHGSIPDAVAATQQGVFSFL 105
                   89********************.************************************************************************** PP

                   ESSG-HHHHHHHH CS
  Response_reg  99 sKpfdpeeLlkal 111
                   +Kp+d+++L ka+
    CTQ29363.1 106 TKPVDKDALYKAI 118
                   **********998 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.7   2.4e+03      22      69 ..      79     126 ..      71     129 .. 0.77
   2 !   82.2   0.0   2.7e-26   3.8e-23       2     138 .]     139     308 ..     138     308 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.7
                      S-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-HHHHHHHTT CS
  Sigma54_activ_2  22 lpvfltGekGsgkelvArlLhknsgpwleifvverlaklpldlleqak 69 
                      +pv ++ + Gs ++ vA + +   +   ++++ + l k+  + leq +
       CTQ29363.1  79 MPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYKAIDEALEQRS 126
                      699999999999999998877777777777777777777777777655 PP

  == domain 2  score: 82.2 bits;  conditional E-value: 2.7e-26
                      ---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.......................HHHHHHTTTSE CS
  Sigma54_activ_2   2 gasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.......................ldlleqakggt 72 
                       +s+++ +l e+   +aqs + v++ G+ G+gke+vA+++h+ s + +++fv +++++lp                         l++ a+ggt
       CTQ29363.1 139 TRSPLMLRLLEQAGMVAQSDVSVLINGQSGTGKEIVAQAIHNASPRHDKPFVAINCGALPeqlleselfghargaftgavsnrEGLFQAAEGGT 232
                      68999999****************************************************555555555555555555555544455558**** PP

                      EEEEE-TT--HHHHHHHHHHHHH.........HT.TTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  73 LylkdiadlskaeqkeLlellak.........ae.ksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      L+l +i d++ a+q +Ll +l++          + + ++r++s++ +dl++ ++ g+f e L+++L  + l++PpL
       CTQ29363.1 233 LFLDEIGDMPVALQVKLLRVLQErkvrplgsnRDiEINVRIISATHRDLPKAMARGEFREDLFYRLNVVNLKIPPL 308
                      ******************************9844589**************************************9 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   2.2e-09     3e-06       2     118 ..     161     275 ..     160     298 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 2.2e-09
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE-...-TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvql...trdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrl 94 
                 vl+ G++GtgK  +a+ +  a     ++++ +++   ++++ e++l+g+ + +  +++     l  +a eg +l+lDE+  ++ + + +Ll++l er++
  CTQ29363.1 161 VLINGQSGTGKEIVAQAIHNASprhDKPFVAINCgalPEQLLESELFGHARGAFTGAVSNREGLF-QAAEGGTLFLDEIGDMPVALQVKLLRVLQERKV 258
                 899*******************9988888888652227799999999999966333333333444.5779****************************9 PP

                 E..-SSSEEE---......-EEEE CS
       AAA_5  95 lleeggelvkaknddllerfrvia 118
                 ++  +++ +  +       +r+i 
  CTQ29363.1 259 RPLGSNRDIEIN-------VRIIS 275
                 966555555433.......55555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.3e-07   0.00018       1     125 [.     161     291 ..     161     298 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.3e-07
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS.....STTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHHTTCCCHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk.....yvgesekkirelfkeakeka.......kpsilfiDEidalaksrsgseseeeer 84 
                 vl+ G  GtGK ++a+a+ + +   + +f+ i++  l ++     +      + r+ f+ a +++       +   lf+DEi  +  +           
  CTQ29363.1 161 VLINGQSGTGKEIVAQAIHNASprhDKPFVAINCGALPEQlleseL----FGHARGAFTGAVSNReglfqaaEGGTLFLDEIGDMPVAL---------- 245
                 6899*****************8554699*******99977655563....34444444444333333355534488*********7666.......... PP

                 HHHHHHHHHHHTTTS........SSTEEEEEEESSGGGSTHHHHSTTSS CS
         AAA  85 vvnqLlteldgvkkk........eskvivigatnrpdkldpallrgRfd 125
                  + +Ll++l++ k +        e +v +i at+r  +l++a+ rg f 
  CTQ29363.1 246 -QVKLLRVLQERKVRplgsnrdiEINVRIISATHR--DLPKAMARGEFR 291
                 .999*****99999999999999778999999998..566666656665 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.3e-05     0.018       4      80 ..     159     241 ..     156     286 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.3e-05
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---.......----THHHHHHHHHTTT-HHHHTTSEEEEETGGG- CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselle.......eeevehlvsrligappgyvgaeegGivllDEidKi 80 
                 +s+l+ g++g+Gk+++a+a+ +    +++k+++ +++ +l e          ++   +  + +++g  +a+egG ++lDEi   
  CTQ29363.1 159 VSVLINGQSGTGKEIVAQAIHNASP-RHDKPFVAINCGALPEqlleselFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM 241
                 799**********************.9**********998886665333334555666677778999999***********655 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   2.3e-05     0.032       4      37 ..     398     431 ..     395     436 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHH CS
       HTH_8   4 evEkelIeaALertgGnkskAArlLGisRrtLyr 37 
                 ++E +++ + L+ t+Gn+++AAr+ G +R+ +y+
  CTQ29363.1 398 QFELNYLRKLLQITKGNVTHAARMAGRNRTEFYK 431
                 8999********************9999888775 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0056       7.8      23      48 ..     159     184 ..     148     190 .. 0.83
   2 ?    5.6   0.0    0.0065       8.9      93     135 ..     216     258 ..     208     277 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0056
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlpsllpp 48 
                    ++l+ G +G+GK ++a+++++  p+
    CTQ29363.1 159 VSVLINGQSGTGKEIVAQAIHNASPR 184
                   5799***************9987665 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0065
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgev 135
                   g  + + G    a+ G LfLDE+ ++       L + l++++v
    CTQ29363.1 216 GAVSNREGLFQAAEGGTLFLDEIGDMPVALQVKLLRVLQERKV 258
                   455778899999***********99987776666555666655 PP

>> IDEAL  IDEAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   9.8e-05      0.13      11      25 ..     111     125 ..     110     128 .. 0.93
   2 ?   -2.5   0.1       3.2   4.4e+03      25      33 ..     424     432 ..     424     432 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.8e-05
       IDEAL  11 rekLlreIDeALdnr 25 
                 ++ L++ IDeAL++r
  CTQ29363.1 111 KDALYKAIDEALEQR 125
                 789**********98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.2
       IDEAL  25 rDkeaFleL 33 
                 r++ +F++L
  CTQ29363.1 424 RNRTEFYKL 432
                 8999***98 PP

>> UPF0175  Uncharacterised protein family (UPF0175)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014      0.19      38      60 ..     417     439 ..     414     445 .] 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
     UPF0175  38 kAaelaglsrveflelLarrgip 60 
                  Aa++ag +r ef++lL+r++ +
  CTQ29363.1 417 HAARMAGRNRTEFYKLLSRHELD 439
                 59*****************9877 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0001      0.14      51      86 ..     159     195 ..     134     202 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
                 XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelg.edvpfvalsgs 86 
                  +vL+ G+sgtGk  +a ai ++   +d pfva++ +
  CTQ29363.1 159 VSVLINGQSGTGKEIVAQAIHNASPrHDKPFVAINCG 195
                 359*****************998766899***99875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.6   3.5e+03      81     104 ..     118     140 ..      95     158 .. 0.62
   2 ?   11.1   0.1   0.00028      0.39      11      62 ..     146     196 ..     136     337 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.6
      AAA_16  81 llrqlldeaesaeleawrekleea 104
                 + ++l+++ + a  eawr+++ ++
  CTQ29363.1 118 IDEALEQR-SPATDEAWRQAIVTR 140
                 22333333.444778888877765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00028
      AAA_16  11 qLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdq 62 
                 +Ll+  ++v++++  +vl+ G+sG+GK  +++++++a  +++  f++ +c  
  CTQ29363.1 146 RLLEQAGMVAQSD-VSVLINGQSGTGKEIVAQAIHNASPRHDKPFVAINCGA 196
                 4444555666666.8********************88777744444444433 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00022       0.3     116     165 ..      78     133 ..      77     138 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00022
                      T--EEEET.TTTHCHHCHTTTSE...EEE-TT-HHHHHHHHHHHHHSH..HHHHHH CS
  Glycos_transf_1 116 glpviasn.aggpaevvkdgetG...llvkpnnaealaeairkllede..elrerl 165
                      g+pvi+   +g +++ v+  ++G   +l kp++ +al +ai+++le++   + e++
       CTQ29363.1  78 GMPVIILTaHGSIPDAVAATQQGvfsFLTKPVDKDALYKAIDEALEQRspATDEAW 133
                      788887666************77444689999**************9865555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3235.89
//
Query:       CTQ29364.1  [L=228]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-76  256.2   4.7    1.8e-76  255.9   4.7    1.0  1  Lipoprotein_20  YfhG lipoprotein
  ------ inclusion threshold ------
       0.45   11.6   1.8       0.87   10.7   1.8    1.5  1  DUF5320         Family of unknown function (DUF5320)


Domain annotation for each model (and alignments):
>> Lipoprotein_20  YfhG lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.9   4.7   2.1e-80   1.8e-76       2     170 ..      46     214 ..      45     219 .. 0.98

  Alignments for each domain:
  == domain 1  score: 255.9 bits;  conditional E-value: 2.1e-80
  Lipoprotein_20   2 eqkvadyrlaeCeklwqleskealenaLyWlramdCadrlssaeareeakrltedsWdeafkqsiLlanaeitlaerrkllerlnaysaqfpasl 96 
                     +++vad+ +++C+++w+++s+++ +n+LyWlr +dCadrl++a+ar+eakr+t+dsW++af+++iLla+a+it++err+l++rl+++s q+++++
      CTQ29364.1  46 QHQVADFVAVDCADIWAHSSDASDKNPLYWLRGIDCADRLAPAQARAEAKRHTDDSWQDAFRRGILLADAKITPEERRDLVARLDTFSPQIAVQV 140
                     79********************************************************************************************* PP

  Lipoprotein_20  97 rpllqlWreqqalqlalaeeraryqrlqeesdskldslreqqaaLeaeLeettrKLenLtdiERqLssRkqaqg 170
                     rpl+qlWr++q++ql+l+eerary++lq++sds+l++lr+q+ aL+++Le ttrKLenLtdiERqLssRk+ ++
      CTQ29364.1 141 RPLYQLWRDGQTRQLQLVEERARYAKLQQSSDSELETLRQQELALREQLELTTRKLENLTDIERQLSSRKPGGN 214
                     **********************************************************************9766 PP

>> DUF5320  Family of unknown function (DUF5320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.8   9.7e-05      0.87      63      99 .]     163     199 ..     141     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.7e-05
     DUF5320  63 aaetaeaskeeekelLeeqaeaLeeeleaikkrlkel 99 
                  +++ ++s+++e e L++q+ aL+e+le   ++l++l
  CTQ29364.1 163 RYAKLQQSSDSELETLRQQELALREQLELTTRKLENL 199
                 355778999**********************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1832.41
//
Query:       CTQ29365.1  [L=476]
Description: putative sensory kinase in two-component system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.6e-17   61.8   0.0    1.4e-16   61.0   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
      7e-15   54.8   1.0      7e-15   54.8   1.0    2.4  2  HisKA        His Kinase A (phospho-acceptor) domain
     0.0057   16.5   0.0      0.011   15.7   0.0    1.4  1  HATPase_c_5  GHKL domain
     0.0094   16.4   0.0      0.024   15.1   0.0    1.6  1  DUF1098      Protein of unknown function (DUF1098)
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.029   14.3   0.0    1.7  1  HATPase_c_2  Histidine kinase-like ATPase domain
       0.03   13.9   0.1        7.6    6.0   0.0    2.4  2  4HB_MCP_1    Four helix bundle sensory module for signal tran
      0.037   14.4   1.9       0.12   12.8   0.0    2.7  3  HAMP         HAMP domain
      0.043   13.3   0.3       0.11   11.9   0.0    1.7  2  Clc-like     Clc-like
       0.11   12.6   1.4        7.6    6.7   0.5    3.2  3  HR1          Hr1 repeat


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   7.1e-20   1.4e-16       6     110 ..     368     473 ..     364     475 .. 0.86

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 7.1e-20
                 HHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTS..TSSSHHHHHHHHHHHHTTTEEEEEEETTTEE CS
   HATPase_c   6 LrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsqddstkrgg..ggtGlGlsivkklvelmgGeiwvesepgrGt 102
                 L  +++nl +Nav + +++g+i+++  ++ ++++i v ++G  ip ++ +++fe+f+q +s +r+g  +g+GlGlsi++  v++m+Ge+++ + p +  
  CTQ29365.1 368 LISVMDNLYSNAVHYGAESGNIRIHSYRHGEQVRIDVANSGEPIPAAEKNMIFEPFYQ-GSHQRKGavKGSGLGLSIARDCVRQMQGELSLVDAPAGQV 465
                 67899*********96666666666554558***************************.555555335************9999*************** PP

                 EEEEEEES CS
   HATPase_c 103 tftftlpl 110
                 +f++tlp 
  CTQ29365.1 466 CFRITLPS 473
                 *****996 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.59   1.2e+03      17      63 ..      17      70 ..      17      71 .. 0.70
   2 !   54.8   1.0   3.5e-18     7e-15       2      66 ..     250     316 ..     249     317 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.59
                HHHHHHHHHHH.HC........T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       HisKA 17 LsailgnaeaL.kre......gklteelkeyletiesearrldhlvedlLdlsr 63
                Ls++l  + +L   +      ++l+ + +   +t    arr +++++  L+++r
  CTQ29365.1 17 LSFVLILLPLLvLAWqawqslNALSAQAAHINRTTLVDARRSEAMINAALEMER 70
                566666666665333444666777777777888888899999999999998876 PP

  == domain 2  score: 54.8 bits;  conditional E-value: 3.5e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC....T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkre..gklteelkeyletiesearrldhlvedlLdlsriea 66 
                 + +fl +++HEL+tPL++++  +e+L ++  g+lt+e++e +e++ s++r l++l+e+lLd+ r +a
  CTQ29365.1 250 RHQFLRHLSHELKTPLASMREGTELLADRvaGPLTPEQQEIVEILDSSSRNLQKLIEQLLDYNRKQA 316
                 679***********************9999********************************99876 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.4e-06     0.011       6     100 ..     368     471 ..     364     472 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.4e-06
  HATPase_c_5   6 lcvilgnlLdNAieacskieeekrfIrltvrekkksliisieNsyeg.....ek.......kklesskskkeehGiGlksireivkkykgnls.ieae 90 
                  l++++ nl  NA+    +       Ir++  ++ +++ i + Ns e      ++       +  +++k   +  G+Gl+  r +v++ +g+ls ++a 
   CTQ29365.1 368 LISVMDNLYSNAVHYGAESG----NIRIHSYRHGEQVRIDVANSGEPipaaeKNmifepfyQGSHQRKGAVKGSGLGLSIARDCVRQMQGELSlVDAP 461
                  66777888888887766655....7*******************8877777522455556678889999999******************99956666 PP

  HATPase_c_5  91 dglFtlsvll 100
                   g  +  ++l
   CTQ29365.1 462 AGQVCFRITL 471
                  6666666655 PP

>> DUF1098  Protein of unknown function (DUF1098)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-05     0.024      37      90 ..     281     339 ..     268     341 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-05
     DUF1098  37 eDisPnkkevLkkLatksvslkrlLegi.edn....dsiiklnaieavdvLevlynvvd 90 
                   ++P+++e +++L + s+ l++l+e + + n    d  + ++a++ vd+++++ nvv 
  CTQ29365.1 281 GPLTPEQQEIVEILDSSSRNLQKLIEQLlDYNrkqaDGPVAREAVDLVDLVDLVENVVA 339
                 5679**********************997666222245699***************985 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.5e-05     0.029      40     110 ..     376     449 ..     334     463 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
  HATPase_c_2  40 ctNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikglvD 110
                   +Nav+++ ++   g ++++  + +e++++ va+sG++ +++++++  e+ +      k+  k +G+Gl + +  v 
   CTQ29365.1 376 YSNAVHYGAES---GNIRIHSYRHGEQVRIDVANSGEPIPAAEKNMIFEPFYqgshqrKGAVKGSGLGLSIARDCVR 449
                  68999999984...77**********************999988887776558899999999999999999887765 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0038       7.6      10      83 ..      17      90 ..      11     101 .. 0.90
   2 ?    5.1   0.0    0.0073        15     146     171 ..     292     317 ..     256     321 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0038
   4HB_MCP_1 10 llflllallliivGvvGlyslkkinknletmYedrllpikdlgeikanlrelradlleliltkdkaekdellkd 83
                l+f+l++l l++++   + sl+ +++++  +    l+  +  + + + + e++++ +++ + +d+   +  +++
  CTQ29365.1 17 LSFVLILLPLLVLAWQAWQSLNALSAQAAHINRTTLVDARRSEAMINAALEMERSYRQYCVLDDPTLARVYQNQ 90
                789*************************************************************9987766665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0073
   4HB_MCP_1 146 tegrparekliealeelvdlnlkvAe 171
                 + ++++ ++l++++e+l d+n+k+A+
  CTQ29365.1 292 EILDSSSRNLQKLIEQLLDYNRKQAD 317
                 4556778999*************996 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.84   1.7e+03       1      20 [.      28      47 ..      28      57 .. 0.86
   2 ?   12.8   0.0   6.1e-05      0.12       1      51 [.     192     243 ..     192     245 .. 0.92
   3 ?   -2.9   0.0       4.8   9.6e+03       6      22 ..     261     277 ..     257     290 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.84
                HHHHTTHHHHHHHHHHHHHH CS
        HAMP  1 llarrilrPLrrLaraarri 20
                +la++  ++L+ L+++a++i
  CTQ29365.1 28 VLAWQAWQSLNALSAQAAHI 47
                588999999*******9998 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 6.1e-05
                 HHHHTTHHHHHHHHHHHHHHTTT.BTSSTCCTTSSSHHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaG.dldtrlpvsgrDEiGeLarafNaMldrL 51 
                 l++r i+ P++ ++r +++++aG  ld     +g+ E++ +++ +  +++rL
  CTQ29365.1 192 LFTRMIIGPVKGIERMINQLGAGkSLDDAALFTGPRELRSVGKRIIWLSERL 243
                 689********************999999999***********999999988 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.8
                 THHHHHHHHHHHHHHTT CS
        HAMP   6 ilrPLrrLaraarriaa 22 
                 +  PL  +++ ++ +a+
  CTQ29365.1 261 LKTPLASMREGTELLAD 277
                 56788888887776664 PP

>> Clc-like  Clc-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.2   2.3e+03      10      39 ..      17      46 ..      11      77 .. 0.70
   2 ?   11.9   0.0   5.5e-05      0.11      88     125 ..     162     199 ..     133     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
    Clc-like 10 lsivallLtaaavltPsWqvvdireiraiv 39
                ls+v +lL    +   +Wq  +++ ++a +
  CTQ29365.1 17 LSFVLILLPLLVLAWQAWQSLNALSAQAAH 46
                566666666666667788888888887776 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 5.5e-05
    Clc-like  88 edsavgelethkFygWhkavlilllislllaalsllsg 125
                 ++ +++  e+ +F+gW+  vl+ll ++l+l +  +++g
  CTQ29365.1 162 QQLQQEIAERGQFFGWQALVLFLLSLALVLLFTRMIIG 199
                 45566667999****************99988777765 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         5     1e+04      52      60 ..     162     170 ..     150     171 .. 0.70
   2 ?    2.9   0.0     0.061   1.2e+02      17      65 ..     202     250 ..     201     252 .. 0.88
   3 ?    6.7   0.5    0.0038       7.6      41      66 ..     291     316 ..     284     318 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5
         HR1  52 elLreqLee 60 
                 ++L+++++e
  CTQ29365.1 162 QQLQQEIAE 170
                 556666554 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.061
         HR1  17 eGAenllraleskktqnkkvrqeaeselsesnskielLreqLeelqasv 65 
                 +G+e+++ +l  +k+ +  ++ +   el++  ++i  L e+L+ l++++
  CTQ29365.1 202 KGIERMINQLGAGKSLDDAALFTGPRELRSVGKRIIWLSERLAWLESQR 250
                 79*********99999999999999999999999999999998887755 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0038
         HR1  41 eselsesnskielLreqLeelqasvq 66 
                    l++s+++++ L eqL ++++++ 
  CTQ29365.1 291 VEILDSSSRNLQKLIEQLLDYNRKQA 316
                 556899****************9664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3450.17
//
Query:       CTQ29366.1  [L=1295]
Description: phosphoribosylformyl-glycineamide synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.9e-103  345.1   0.0   3.1e-103  344.4   0.0    1.3  1  GATase_5        CobB/CobQ-like glutamine amidotransferase dom
    5.8e-44  148.8   0.0    1.1e-43  147.8   0.0    1.5  1  FGAR-AT_N       Formylglycinamide ribonucleotide amidotransfe
    1.9e-43  148.3   2.6    5.7e-27   94.8   0.0    2.4  2  AIRS_C          AIR synthase related protein, C-terminal doma
    1.7e-23   82.8   0.0    5.6e-23   81.2   0.0    2.0  2  FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransfe
  ------ inclusion threshold ------
      0.082   13.6   3.8       0.74   10.5   0.0    3.7  4  AIRS            AIR synthase related protein, N-terminal doma


Domain annotation for each model (and alignments):
>> GATase_5  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.4   0.0  8.5e-107  3.1e-103       1     258 [.    1039    1292 ..    1039    1293 .. 0.98

  Alignments for each domain:
  == domain 1  score: 344.4 bits;  conditional E-value: 8.5e-107
    GATase_5    1 kpkvailreeGvngeyemaaafekaGfeavdvhmsdllegrvslddfqilalpGGfsygDelgsgkgwakslllneklrealekflnredtlaLGiC 97  
                  +pkva+lre+Gvn+++emaaaf++aGf+a+dvhmsdll+gr+ l df+ l+++GGfsygD+lg+g+gwaks+l+ne++r+++++f++r+ tlaLG+C
  CTQ29366.1 1039 RPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLAGRTGLGDFHALVACGGFSYGDVLGAGEGWAKSILFNERVRDEFATFFHRPQTLALGVC 1135
                  79*********************************************************************************************** PP

    GATase_5   98 nGfqlLvklg.lvpggeieeaeksptltrNksgrfesrlvsvvvsekspsvflkgmeglslp..vahGeGrfvfkseevlkeleangqvalrYvdee 191 
                  nG+q++++l+ l+pg     ++ +p+++rN+s rfe+r++ v+v ++sps++l+gm g+++p  v+hGeG++++++++ l++le++g+valr+vd+ 
  CTQ29366.1 1136 NGCQMMSNLReLIPG-----SDLWPRFVRNQSDRFEARFSLVEV-TQSPSLLLEGMVGSRMPiaVSHGEGQVEVRDSAHLAQLESKGLVALRFVDNF 1226
                  ***************.....9******************88876.9***************999********************************* PP

    GATase_5  192 gkpteeyplNPNgSpegiagitspdGRvlalmpHpervveavqksiipeeeeeevspwlrlFenavk 258 
                  gk+te+yp+NPNgSp+gi+++ts++GR +++mpHperv+++v++s +++e++ e spw+r+F+na+k
  CTQ29366.1 1227 GKVTETYPANPNGSPNGITAVTSESGRATIMMPHPERVFRTVSNS-WHPENWGEDSPWMRIFRNARK 1292
                  *********************************************.667889767**********96 PP

>> FGAR-AT_N  Formylglycinamide ribonucleotide amidotransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.8   0.0   3.1e-47   1.1e-43       1     115 []      36     150 ..      36     150 .. 0.99

  Alignments for each domain:
  == domain 1  score: 147.8 bits;  conditional E-value: 3.1e-47
   FGAR-AT_N   1 eyvhfveleeelseeeravleqlLeygdkleeeeeegelllVvPRlGtiSpWsSkAtdIahncglekvkRiErgiayvlelkelseeelaalaalLhDr 99 
                 ey+hf++l+++ls+++r++l++lL+yg++l++++++g+lllV+PR+GtiSpWsSkAtdIahncgl++v R+Erg+ay++e+++l+e+++a++aa LhDr
  CTQ29366.1  36 EYIHFADLNAPLSADDRERLARLLQYGPSLSSHTPTGKLLLVTPRPGTISPWSSKATDIAHNCGLAQVVRLERGVAYYVEASTLTEAQWATVAAELHDR 134
                 69************************************************************************************************* PP

   FGAR-AT_N 100 mtesvleeledaealF 115
                 m+esv++ele+ e+lF
  CTQ29366.1 135 MMESVFDELEAGEKLF 150
                 **************99 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   0.0   1.6e-30   5.7e-27       2     154 ..     432     589 ..     431     591 .. 0.96
   2 !   52.0   1.9   2.3e-17   8.2e-14       8     153 ..     828     966 ..     821     969 .. 0.87

  Alignments for each domain:
  == domain 1  score: 94.8 bits;  conditional E-value: 1.6e-30
                 TTEEEEEEET....SSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHH..HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTH CS
      AIRS_C   2 pGdvliltgs....lGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaal..kglvkaahDvTgGGLlgalaemapasgvgaeidldkv 94 
                 +G +li++g+    +Glgg + s+ + ++ +++ld  +vq++++++e+++++v +++++l   +++  +hDv++GGL++a +e++ ++g g +++l ++
  CTQ29366.1 432 VGAKLIVLGGpamnIGLGGGAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLgdANPILFIHDVGAGGLSNAMPELVSDGGRGGKFQLRDI 530
                 79999999999**********9999999999998877************************************************************** PP

                 HHHHHHHHHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEESSSEEEE CS
      AIRS_C  95 pifdelesplemllsensGrllvavppeeadavlaileeeglpeaavIGevtakeelsvi 154
                    ++ +sple+++ e+++r+++av+pe+   + +++++e+ p +avIGe+ta+++ls+ 
  CTQ29366.1 531 LSDEPGMSPLEIWCNESQERYVLAVAPEQLPLFDELCRRERAP-YAVIGEATAEQHLSLS 589
                 *****************************************97.***********99875 PP

  == domain 2  score: 52.0 bits;  conditional E-value: 2.3e-17
                 EEET....SSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHHHHHHH CS
      AIRS_C   8 ltgs....lGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpifdeles 102
                 l+        lg+ +++ + ++l ++  d     + dv++++  +++++al a+  +  a hD ++GGLl++laema+ + +g+e d++   + d   +
  CTQ29366.1 828 LIDLgkghNALGATALAQVYRQLGDKPAD-----VRDVAQLKGFWNAMQALVAQ-RKLLAYHDRSDGGLLVTLAEMAFTGHCGMEADIA--ALGD---D 915
                 55444456888999988888888888887.....*******************8.**********************************..6666...4 PP

                 HHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTC.CCEEEEEEEEESSSEEE CS
      AIRS_C 103 plemllsensGrllvavppeeadavlaileeegl.peaavIGevtakeelsv 153
                 +l +l+ e+ G  ++ v++++++av ail+  gl + +  +G+++++++  +
  CTQ29366.1 916 HLAALFNEELG-AVIQVRAADREAVEAILAVNGLaDCVHYLGKAVEGDRFVL 966
                 68999999999.66999999999***********98899*******998776 PP

>> FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransferase linker domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   1.6e-26   5.6e-23       2      50 .]     172     220 ..     171     220 .. 0.97
   2 ?   -3.4   0.0       4.3   1.5e+04      20      34 ..     843     857 ..     841     857 .. 0.84

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 1.6e-26
  FGAR-AT_linker   2 eeankelglaLsdeEidylqeafeklgrnPtdvElemfaqvwSEHCrHK 50 
                      +an +lglaL+d+Eidylq+af++lgrnP+d+El+mfaq++SEHCrHK
      CTQ29366.1 172 IDANLRLGLALADDEIDYLQDAFTRLGRNPNDIELYMFAQANSEHCRHK 220
                     5899********************************************9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.3
  FGAR-AT_linker  20 lqeafeklgrnPtdv 34 
                     l++++++lg +P dv
      CTQ29366.1 843 LAQVYRQLGDKPADV 857
                     7788899*****997 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00021      0.74       5      54 ..     289     361 ..     258     418 .. 0.70
   2 ?    1.1   0.1      0.18   6.4e+02      23      39 ..     702     726 ..     678     764 .. 0.75
   3 ?   -1.8   0.1       1.4   5.2e+03      25      70 ..     898     956 ..     874     981 .. 0.65
   4 ?   -1.0   0.1      0.81   2.9e+03      38      73 ..    1035    1075 ..    1026    1093 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00021
                 EEEEEEEEE.EECCTCCCCHHHHHHHHHHHHHHTT..TEEEEEEEEEEEEC......................H CS
        AIRS   5 vvvttdshnrpvlvepvhfiGakavavnlsDlaam..GArPlalllslalp......................w 54 
                 +++++++hn+p++++p  + +a++ ++ ++D  a+  GA+P a l+ ++++                      +
  CTQ29366.1 289 ILMKVETHNHPTAISPWPG-AATGSGGEIRDEGATgrGAKPKAGLVGFSVSnlripgfeqpweedfgkpdrivT 361
                 599****************.***********8765338****99999998877777666665555555555550 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.18
                 C........HHHHHHHHHHHHHHTT CS
        AIRS  23 f........iGakavavnlsDlaam 39 
                 +         G++av+++l ++aa+
  CTQ29366.1 702 PvalldfaaSGRLAVGEALTNIAAT 726
                 13334445589***********985 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHTTTEEEEEEEEEEEEC.............HHHHHHHHHHHHHHHTT CS
        AIRS  25 GakavavnlsDlaamGArPlalllslalp.............wleevvrglaeaaeelg 70 
                 + ++ ++   D+aa G + la+l +  l+             ++  +v+gla++++ lg
  CTQ29366.1 898 AFTGHCGMEADIAALGDDHLAALFNEELGaviqvraadreavEAILAVNGLADCVHYLG 956
                 66666777788888888888777777777777676666664422234455555554444 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.81
                  TTTEEEE.EEEEEEEEC....HHHHHHHHHHHHHHHTT-EE CS
        AIRS   38 amGArPl.alllslalp....wleevvrglaeaaeelgvpl 73  
                  a+GArP  a+l    ++     ++++ r   +a++ +  +l
  CTQ29366.1 1035 ATGARPKvAVLREQGVNshveMAAAFHRAGFDAIDVHMSDL 1075
                  66666664433333333434333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.42
# Mc/sec: 9153.80
//
Query:       CTQ29367.1  [L=554]
Description: putative transglycosylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-32  112.1   0.5    3.9e-32  111.5   0.5    1.3  1  SBP_bac_3      Bacterial extracellular solute-binding protein
    2.5e-23   81.9   0.0    4.6e-23   81.1   0.0    1.4  1  SLT            Transglycosylase SLT domain
  ------ inclusion threshold ------
       0.01   15.6   0.0      0.026   14.2   0.0    1.8  1  Lysozyme_like  Lysozyme-like


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.5   6.5e-36   3.9e-32       9     225 .]      94     311 ..      88     311 .. 0.91

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 6.5e-36
                 BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-.SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGTCCHSSCG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   9 ypPfsykdengeltGfdvdlakaiakrlgvkvefvpv.swdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaskissiksla 106
                 + P+++ + n++  G d++lak++a+ lgv+++++   ++++l++ l++g++D+++a++ +++eR +++     y+s +q+l++r ++ +++++++   
  CTQ29367.1  94 NSPMTFATMNNKAFGLDYELAKQFADYLGVTLKITVRqNISQLFDDLDDGQADMLAAGLVYNQERVKNYQAGPTYYSVSQQLVYRVGN-TRPRTLA--- 188
                 67*****************************9999955***********************************************874.5555555... PP

                 CGTTSEEEEETTSHHHHHHHHHHHC.....TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEEETTTHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 107 dLkgkkvgvqagstaeellkeelkk.....gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiavrkgdseLrk 200
                  L   ++ +  g++a + l+  +++       ++ e    ++++qa+ +g+ d+++ads+++  +++ +p++ v l + + +++  ++ +r +d++L +
  CTQ29367.1 189 ALTAEQLTIAPGHVAINDLQTLKAEkypdlAWRVDEKRGTTALMQAVIDGKLDYTIADSVAVSLFQRVHPELAVAL-DITDEQPVTWFSARDDDNSLSA 286
                 **9*9*********99998875555677676677778888888*********************************.********************** PP

                 HHHHHHHHHHHTTHHHHHHHHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 201 ainkalaelkadgtlakisekWfge 225
                 a+ ++++++ +dgtla+++ek++g+
  CTQ29367.1 287 AMLDFFNNINEDGTLARLEEKYLGH 311
                 **********************995 PP

>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   7.6e-27   4.6e-23       7     113 ..     340     446 ..     337     450 .. 0.95

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 7.6e-27
                 HHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT-SHHHHCSHHHHHHHHHHHHHHHHHTTTT......HHHHHHHHHHH-HH CS
         SLT   7 ekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvklsedelldPeknisagakyLkslykqyng......slllalaAYNaGeg 99 
                 + +++++++llaaia++ES+++p+A+s++g  G+m+++++ta++lgl       +++d +++i+ g++yL+++++++ +      + ++alaAYN G +
  CTQ29367.1 340 KYAREIDWRLLAAIAWQESHWDPQATSPTGVRGMMMLTRNTAQSLGL------TDRTDAAQSIDGGMRYLQDMMDKVPDsipkdeRIWFALAAYNMGYA 432
                 56889***************************************998......8********************************************* PP

                 HHHHTTHSSHHHHH CS
         SLT 100 tvkkakkevkkkek 113
                 +  +a + ++k++ 
  CTQ29367.1 433 HMLDAMALTRKQKG 446
                 ****9999999876 PP

>> Lysozyme_like  Lysozyme-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.4e-06     0.026      57      97 ..     390     433 ..     331     491 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.4e-06
  Lysozyme_like  57 kdpeeSikqGvkylaealekakekgv...dletavQaYNfGkgY 97 
                    +d+ +Si  G++yl+++++k  ++ +   +++ a+ aYN+G ++
     CTQ29367.1 390 TDAAQSIDGGMRYLQDMMDKVPDSIPkdeRIWFALAAYNMGYAH 433
                    6999***************98876666669***********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3888.49
//
Query:       CTQ29368.1  [L=169]
Description: tRNA-specific adenosine deaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-33  114.8   0.0    3.5e-33  114.3   0.0    1.2  1  MafB19-deam      MafB19-like deaminase
    1.9e-27   95.1   0.0    2.9e-27   94.5   0.0    1.2  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
     0.0001   22.4   0.0     0.0006   19.9   0.0    1.9  2  SNAD4            Secreted Novel AID/APOBEC-like Deaminase 4
    0.00045   20.3   0.0    0.00069   19.7   0.0    1.5  1  Bd3614-deam      Bd3614-like deaminase
     0.0078   16.3   0.0      0.015   15.3   0.0    1.4  2  APOBEC2          APOBEC2
  ------ inclusion threshold ------
      0.011   15.9   0.0      0.021   15.0   0.0    1.4  2  NAD2             Novel AID APOBEC clade 2
      0.011   15.8   0.0      0.019   15.0   0.0    1.3  1  NAD1             Novel AID APOBEC clade 1
      0.013   15.4   0.0      0.018   14.9   0.0    1.3  1  APOBEC_N         APOBEC-like N-terminal domain
      0.023   14.8   0.0       0.12   12.5   0.0    1.9  2  APOBEC3          APOBEC3


Domain annotation for each model (and alignments):
>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.0   1.7e-36   3.5e-33       2     138 .]       7     153 ..       6     153 .. 0.98

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 1.7e-36
  MafB19-deam   2 dkekafrkalaevekatkikedkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvy 99 
                  ++e ++r+al +++ a + +e+++gav v++++vi+ g n+  +++++taHaEi al+q    l++ rl datlyvtlepC mCaga+v +++ +lv+
   CTQ29368.1   7 NDEYWMRHALTLAKRAWEEGEVPVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLIDATLYVTLEPCVMCAGAMVHSRIARLVF 104
                  6789********************************************************************************************** PP

  MafB19-deam 100 gagnpks......lnkLkvkekngrvelv....eddckeilkgffkklr 138
                  ga + k+      + +L+    n+rve+      + c+++l++ff++ r
   CTQ29368.1 105 GARDAKTgaagslMDVLHHPGMNHRVEISegvlAESCSAMLSDFFRWRR 153
                  ****999********************9999999************987 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.0   1.4e-30   2.9e-27       4     100 ..       8     105 ..       6     106 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.5 bits;  conditional E-value: 1.4e-30
                      HHHHHHHHHHHHHHHHTTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.TSSCETTEEEEEEE--BHHHHHHHHHHT-SE CS
  dCMP_cyt_deam_1   4 dekllelalkaakeaqkcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaakn.ggsklegatlyvtlePCsmCakaiiqsgikk 96 
                      de++++ al++ak+a ++ +++VGav+v+n+++i++g+n+    +++t+HAE++A+++ +   ++++l +atlyvtlePC mCa a+++s+i +
       CTQ29368.1   8 DEYWMRHALTLAKRAWEEGEVPVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMALRQGGLVlQNYRLIDATLYVTLEPCVMCAGAMVHSRIAR 101
                      89**********************************************************998899**************************** PP

                      EEEE CS
  dCMP_cyt_deam_1  97 vvvg 100
                      +v+g
       CTQ29368.1 102 LVFG 105
                      **97 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     3e-07    0.0006      12      61 ..      45      95 ..      35     100 .. 0.82
   2 ?   -0.2   0.0      0.52     1e+03      76      93 ..     145     162 ..     138     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3e-07
       SNAD4 12 lekgvlknkke.haEllflekikseldpsqeyrvtwylswsPCaeCaekia 61
                +++ + +++ + haE++ l++    l++ + ++ t+y++  PC+ Ca +++
  CTQ29368.1 45 WNRPIGRHDPTaHAEIMALRQGGLVLQNYRLIDATLYVTLEPCVMCAGAMV 95
                555555554446**********77999999*****************9987 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.52
       SNAD4  76 aarLyfweeenregLrsL 93 
                  + ++ w++e++++L++ 
  CTQ29368.1 145 LSDFFRWRREEKKALKKA 162
                 566788999999999875 PP

>> Bd3614-deam  Bd3614-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.5e-07   0.00069      77      97 ..      77      97 ..      48     130 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.5e-07
  Bd3614-deam 77 garllvtlqcCkmCAalvvaa 97
                 +a+l+vtl++C mCA+ +v+ 
   CTQ29368.1 77 DATLYVTLEPCVMCAGAMVHS 97
                 79*************999886 PP

>> APOBEC2  APOBEC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.7e-06     0.015      47      91 ..      53      96 ..      31     101 .. 0.84
   2 ?   -3.4   0.0       4.3   8.5e+03     109     122 ..     148     161 ..     141     165 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.7e-06
     APOBEC2 47 ekkcHaEllflskvkkkkleekkeykvtwyvswsPCaeCaeevae 91
                ++++HaE++ l++     l++ +  + t+yv+  PC+ Ca  +++
  CTQ29368.1 53 DPTAHAEIMALRQGGL-VLQNYRLIDATLYVTLEPCVMCAGAMVH 96
                3678*******99887.888999999**************99875 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.3
     APOBEC2 109 yfleeeeyqegLrs 122
                 +f +++e +++L++
  CTQ29368.1 148 FFRWRREEKKALKK 161
                 47778888888776 PP

>> NAD2  Novel AID APOBEC clade 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0     1e-05     0.021      51      94 ..      53      95 ..      32     102 .. 0.86
   2 ?   -3.5   0.0       4.7   9.3e+03     113     128 ..     148     163 ..     144     166 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1e-05
        NAD2 51 esklhaellfLskfvlrqlelaqeykvtwyvsWsPCpeCaaeva 94
                +   hae++ L++     l+ ++    t yv+  PC+ Ca+ ++
  CTQ29368.1 53 DPTAHAEIMALRQG-GLVLQNYRLIDATLYVTLEPCVMCAGAMV 95
                6789*******998.579**********************9876 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.7
        NAD2 113 YyfwepdyqeaLrsLr 128
                 ++ w+++ ++aL++ r
  CTQ29368.1 148 FFRWRREEKKALKKAR 163
                 5778888888887765 PP

>> NAD1  Novel AID APOBEC clade 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   9.7e-06     0.019      47      90 ..      54      95 ..      34     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.7e-06
        NAD1 47 skcHaEllflnkikslklldpsqkykvtwylswSPCseCaskla 90
                 ++HaE++ l++   l l ++ + ++ t+y++  PC  Ca  ++
  CTQ29368.1 54 PTAHAEIMALRQG-GLVL-QNYRLIDATLYVTLEPCVMCAGAMV 95
                345******9998.3333.789999***************9887 PP

>> APOBEC_N  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   9.1e-06     0.018      47      94 ..      55      96 ..      18     101 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.1e-06
                TBCHHHHHHHHHHHHT--.TTEEEEEEEEESS-S-HH....HHHHHHH CS
    APOBEC_N 47 skHaEelflediedqelrepkkkyeitlYvswsPChessdeCaeklaa 94
                 +HaE + l++   + l+ + +    tlYv++ PC+     Ca ++++
  CTQ29368.1 55 TAHAEIMALRQGGLV-LQ-NYRLIDATLYVTLEPCVM----CAGAMVH 96
                79*****99985544.44.579***************....*999876 PP

>> APOBEC3  APOBEC3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.2e-05      0.12      29      71 ..      54      95 ..      32     101 .. 0.85
   2 ?   -0.1   0.0      0.47   9.4e+02      65     102 ..     140     158 ..     137     166 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.2e-05
     APOBEC3 29 ekkHAEerfidkirslnldslkqykitcylswsPcpkCaeelv 71
                 + HAE++++++     l++ +    t+y++  Pc  Ca  +v
  CTQ29368.1 54 PTAHAEIMALRQGGL-VLQNYRLIDATLYVTLEPCVMCAGAMV 95
                578*******98765.8999999999*************9988 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.47
     APOBEC3  65 kCaeelveflkenselklsifasrlyrgyeversskeG 102
                 +C++ l +f++ ++e                    k+ 
  CTQ29368.1 140 SCSAMLSDFFRWRREE-------------------KKA 158
                 5666666666655554...................444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1264.08
//
Query:       CTQ29369.1  [L=211]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-11   44.9   0.0    2.1e-11   44.6   0.0    1.1  1  HAD       haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   1.2e-15   2.1e-11       1     187 [.       9     192 ..       9     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.2e-15
         HAD   1 alfDfDgTLldgdslelllrfllrrgaprlwralreklllal....frellrldraglaelleallaglseelaaelerfv....aevirpklldpgal 91 
                 ++fD+DgTL ++d++  +lr+llr+ ++    +l++ ++  +    ++  +r  r     ll+a+  g +e++ ++le+ +    +++++     p + 
  CTQ29369.1   9 VFFDLDGTLHQQDMFGSFLRYLLRHLPLN---LLLVVPMGPVilagLAVSGRAARWPMSLLLWATTFGRREAVLKRLEAEFvgwfRHHVTAF---PVVH 101
                 79******************888875543...44444333333446788899999999***********99999988888866665555543...6666 PP

         HAD  92 ellaahr.aaGdrvvvvSgglrplvepll.aelg..adevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpl 186
                 ++l a + +    v++++g+++ lve +  + l     +++a++        +++++    + g++kv  l++     + g++l     y+Ds++D pl
  CTQ29369.1 102 ARLTAYLtSTDADVWLITGSPQSLVEQVYrDTLWlpRVNLIASRT----ARRWGGWVLTLRCLGHEKVVQLEK-----KIGAPLRLYSGYSDSEQDNPL 191
                 666644427777*****************55666888999***32....333447899999************.....66666666789*******998 PP

         HAD 187 l 187
                 l
  CTQ29369.1 192 L 192
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1736.64
//
Query:       CTQ29370.1  [L=282]
Description: fused putative DNA-binding transcriptional regulator; putative isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.5e-30  102.6   0.1    2.2e-29  101.3   0.1    1.7  1  HTH_6           Helix-turn-helix domain, rpiR family
    5.4e-29  100.7   0.8    8.2e-29  100.1   0.8    1.3  1  SIS             SIS domain
    1.4e-05   25.2   0.2     0.0011   19.0   0.0    2.5  2  SIS_2           SIS domain
     0.0013   18.5   0.0        1.5    8.7   0.0    2.6  2  HTH_IclR        IclR helix-turn-helix domain
     0.0025   17.8   0.0     0.0095   15.9   0.0    2.1  1  DUF2388         Protein of unknown function (DUF2388)
  ------ inclusion threshold ------
      0.025   14.9   0.6        0.8   10.1   0.0    2.7  3  Rrf2            Transcriptional regulator
      0.078   13.2   0.0        5.9    7.2   0.0    2.5  2  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.12   12.3   0.2        2.3    8.2   0.0    2.4  2  MarR            MarR family


Domain annotation for each model (and alignments):
>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.1   9.7e-33   2.2e-29       1      76 [.       1      76 [.       1      77 [. 0.98

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 9.7e-33
                --HHHHHHHH-----HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH--HHHHHHHS CS
       HTH_6  1 mnllekiqskkekltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselklaLakelak 76
                mn l++i++++  l+ s+kk+a+yil++pd+ ++ls+++lA++a+vS++++v+fa+kLGfkGF++lklaL+++la+
  CTQ29370.1  1 MNCLTRIRQRYPTLAASDKKLADYILSQPDETRHLSSQQLAAEAGVSQSSVVKFAQKLGFKGFPALKLALSEALAS 76
                89***********************************************************************997 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.1   0.8   3.7e-32   8.2e-29       1     130 [.     128     257 ..     128     258 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.1 bits;  conditional E-value: 3.7e-32
                 HHCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSS CS
         SIS   1 lLakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplaread 99 
                 lL++a+r++v+G+G+s+ +a+++++kl++ig ++v+ +d ++l    ++ +++ddl+++is+sge ++ ++aa +a + g ki+aIT+ + ++l+++a+
  CTQ29370.1 128 LLRNARRVIVTGIGASGLVARNFSWKLMKIGINAVSEQDMHALLAT-VQAMSSDDLLLAISYSGERREINMAAGEALRVGCKILAITGFSPNALQQQAT 225
                 699***************************************9999.**************************************************** PP

                 EEEEEEEECHC.SSSHCHHHHHHHHHHHHHHH CS
         SIS 100 lalyinaepet.lvastksltaqlaaldalav 130
                 ++ly++ae+++   a+++s++aq++++d+l++
  CTQ29370.1 226 HCLYTIAEEQAtRSAAISSTSAQMMLTDLLFM 257
                 ******************************96 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.02        45      29      60 ..     126     157 ..     103     172 .. 0.76
   2 !   19.0   0.0   4.9e-07    0.0011      98     138 .]     174     214 ..     161     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.02
                 HHHHHTT--EEEEESGGGHHHHHHTSSSTT-B CS
       SIS_2  29 adslenggkvlvfGsGhSaalaeelaaraggl 60 
                 +  l+n ++v+v G G S + a ++ +++ ++
  CTQ29370.1 126 VTLLRNARRVIVTGIGASGLVARNFSWKLMKI 157
                 55678999***************999988764 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 4.9e-07
                 HTT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2  98 lvrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                  + +++ D+Ll iS sG+   +  aa +a ++g+k+ A+t+
  CTQ29370.1 174 VQAMSSDDLLLAISYSGERREINMAAGEALRVGCKILAITG 214
                 3556999********************************97 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00066       1.5      16      42 ..      32      58 ..      23      63 .. 0.82
   2 !    7.2   0.1    0.0019       4.4      26      51 ..     238     263 ..     234     264 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00066
                BSS-BHHHHHHHHTS-HHHHHHHHHHH CS
    HTH_IclR 16 pqeltlselArrtglpkStvhRlLqtL 42
                ++ l+ ++lA+++g++ S+v  + q L
  CTQ29370.1 32 TRHLSSQQLAAEAGVSQSSVVKFAQKL 58
                566999**************8877766 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0019
                 HHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  26 rrtglpkStvhRlLqtLvelGyveqd 51 
                 r ++++ +++  +L  L  +G+v+qd
  CTQ29370.1 238 RSAAISSTSAQMMLTDLLFMGLVQQD 263
                 778999*******************9 PP

>> DUF2388  Protein of unknown function (DUF2388)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.2e-06    0.0095      47      70 .]       4      27 ..       2      27 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.2e-06
     DUF2388 47 LqelRsenpelqasDleLAeaILa 70
                L ++R+++p l+asD++LA  IL+
  CTQ29370.1  4 LTRIRQRYPTLAASDKKLADYILS 27
                899*****************9995 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00036       0.8      17      53 ..      26      62 ..      22      63 .. 0.85
   2 ?   -3.1   0.0       4.6     1e+04      39      53 ..     119     133 ..     107     144 .. 0.63
   3 ?    2.1   0.1      0.11   2.4e+02       8      31 ..     222     245 ..     218     267 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
                HHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTT CS
        Rrf2 17 LakeeeeepvsseeiaerqnispsylekilakLrkag 53
                L++ +e +++ss+++a++ ++s+s + k  +kL  +g
  CTQ29370.1 26 LSQPDETRHLSSQQLAAEAGVSQSSVVKFAQKLGFKG 62
                556667777***********************98776 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.6
                 HHHHHHHHHHHHHTT CS
        Rrf2  39 psylekilakLrkag 53 
                 ++ l+  ++ Lr+a 
  CTQ29370.1 119 EETLREAVTLLRNAR 133
                 356667777777665 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHSSTCC-B-HHHH CS
        Rrf2   8 eyalhallyLakeeeeepvsseei 31 
                 ++a+h+l+ +a+e+  +++++++ 
  CTQ29370.1 222 QQATHCLYTIAEEQATRSAAISST 245
                 579999999999999876555544 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0027       5.9      18      50 ..      30      62 ..      23      66 .. 0.83
   2 ?    3.4   0.0     0.041        91      33      53 ..     241     261 ..     228     267 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0027
                    HHHSSB-HHHHHHHHTS-HHHHHHHHHHHHHTT CS
  Fe_dep_repress 18 eekkvvktkdlaerLnvspssVsemlkkLekdG 50
                    +e    + ++la + +vs ssV +  +kL  +G
      CTQ29370.1 30 DETRHLSSQQLAAEAGVSQSSVVKFAQKLGFKG 62
                    466778899***************999997666 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.041
                     TS-HHHHHHHHHHHHHTTSEE CS
  Fe_dep_repress  33 nvspssVsemlkkLekdGyve 53 
                     ++s  s++ ml  L  +G+v+
      CTQ29370.1 241 AISSTSAQMMLTDLLFMGLVQ 261
                     68999**************97 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0     0.001       2.3      16      46 ..      33      63 ..      25      63 .. 0.86
   2 ?    1.5   0.1      0.12   2.8e+02       3      25 ..     222     244 ..     220     255 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.001
                TTEEHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
        MarR 16 gplsvseLakklgvskstvtrvldrLekkGl 46
                  ls ++La   gvs+s+v +++ +L  kG+
  CTQ29370.1 33 RHLSSQQLAAEAGVSQSSVVKFAQKLGFKGF 63
                567899*******************977776 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHSTTEEHHHHHH CS
        MarR   3 ltqfviLrilyeqgplsvseLak 25 
                 ++  ++L++++e+++ + + + +
  CTQ29370.1 222 QQATHCLYTIAEEQATRSAAISS 244
                 56689999999999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2131.31
//
Query:       CTQ29371.1  [L=86]
Description: ferredoxin (4Fe-4S cluster-containing protein) (fdx-like) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.9e-07   29.3  11.8    1.7e-06   28.5  11.8    1.4  1  Fer4_7       4Fe-4S dicluster domain
    1.6e-06   27.7  16.4    4.4e-06   26.3   2.7    3.2  3  Fer4         4Fe-4S binding domain
      5e-06   26.3  11.8    0.00095   19.1   2.1    2.3  2  Fer4_2       4Fe-4S binding domain
    1.4e-05   25.1  11.6    2.8e-05   24.2  11.8    1.4  1  Fer4_9       4Fe-4S dicluster domain
    0.00014   21.7   6.6    0.00017   21.4   6.6    1.1  1  GF_recep_IV  Growth factor receptor domain IV
    0.00016   21.7  13.8     0.0003   20.8  13.8    1.5  1  Fer4_21      4Fe-4S dicluster domain
    0.00045   20.3  14.4      0.002   18.2  14.8    1.8  2  Fer4_10      4Fe-4S dicluster domain
      0.006   16.6  16.7      0.042   13.9   4.8    2.4  2  Fer4_6       4Fe-4S binding domain
  ------ inclusion threshold ------
       0.02   15.8  14.5      0.025   15.5   6.7    2.3  2  Fer4_16      4Fe-4S double cluster binding domain
      0.023   15.2   2.6      0.023   15.2   2.6    2.7  2  Fer4_4       4Fe-4S binding domain
      0.057   13.9  13.2         28    5.3  13.2    2.3  1  Fer4_8       4Fe-4S dicluster domain
       0.11   13.1  14.3       0.16   12.5   5.6    2.5  3  Fer4_17      4Fe-4S dicluster domain
       0.36   10.6  12.6      0.063   13.1   1.7    2.1  2  Fer4_20      Dihydroprymidine dehydrogenase domain II, 4Fe-4S
       0.67   11.0  16.0        2.8    9.1   3.8    2.3  2  Fer4_3       4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5  11.8   1.3e-09   1.7e-06       1      49 [.       8      55 ..       8      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.3e-09
      Fer4_7  1 rCigCgaCvaaCpvkaieldeeenekgtekveidpekClgC......gaCvavCP 49
                +Ci+C  C++ Cp++ai++ e+        +ei++++C+ C        C++vCP
  CTQ29371.1  8 KCINCDMCEPECPNEAISMGES-------IYEINSDRCTECvghydtPTCQKVCP 55
                7******************886.......799********976665447****** PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   2.7   3.4e-09   4.4e-06       5      24 .]       6      25 ..       3      25 .. 0.92
   2 !    6.8   0.5    0.0049       6.3       1      11 [.      31      41 ..      31      41 .. 0.92
   3 ?    3.7   0.7     0.045        58      13      19 ..      49      55 ..      49      56 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.4e-09
                TTTSSS-THHHHHSTTTEEE CS
        Fer4  5 eekCigCGaCvevCPvgAIt 24
                + kCi+C  C+  CP++AI+
  CTQ29371.1  6 TKKCINCDMCEPECPNEAIS 25
                679***************96 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0049
                EEEETTTSSS- CS
        Fer4  1 vvideekCigC 11
                ++i+ ++C+ C
  CTQ29371.1 31 YEINSDRCTEC 41
                589******** PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.045
                HHHHHST CS
        Fer4 13 aCvevCP 19
                +C +vCP
  CTQ29371.1 49 TCQKVCP 55
                5****** PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   2.5   0.00011      0.14       7      22 .]       6      21 ..       2      21 .. 0.88
   2 !   19.1   2.1   7.4e-07   0.00095       3      21 ..      31      55 ..      29      56 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
      Fer4_2  7 tdrCigCgaCvsaCPa 22
                t +Ci+C  C   CP+
  CTQ29371.1  6 TKKCINCDMCEPECPN 21
                789************5 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 7.4e-07
      Fer4_2  3 vvvdtdrCigC.g.....aCvsaCP 21
                +++++drC++C g     +C+++CP
  CTQ29371.1 31 YEINSDRCTECvGhydtpTCQKVCP 55
                789*********667889******9 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2  11.8   2.2e-08   2.8e-05       1      47 [.       8      55 ..       8      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.2e-08
      Fer4_9  1 kCtgCgaCveaCpagvvvedaaerkarlraaseeaCigCga......CveaCp 47
                kC++C+ C++ Cp++++++ ++ ++++ +     +C++C        C ++Cp
  CTQ29371.1  8 KCINCDMCEPECPNEAISMGESIYEINSD-----RCTECVGhydtptCQKVCP 55
                7****************999999999985.....5****999**********9 PP

>> GF_recep_IV  Growth factor receptor domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   6.6   1.3e-07   0.00017      49      93 ..      10      56 ..       4      74 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.3e-07
  GF_recep_IV 49 kkCvkChpeCeklnes..etCsgpgadeClkCahfkdgseCvseCPe 93
                  +C  C+peC +   s  e+ +  ++d+C++C+   d+++C + CP 
   CTQ29371.1 10 INCDMCEPECPNEAISmgESIYEINSDRCTECVGHYDTPTCQKVCPI 56
                 47999*****654433349999***********************95 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8  13.8   2.4e-07    0.0003       5      57 ..       6      60 ..       2      62 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.4e-07
     Fer4_21  5 edkCigCgkCliaCedtshqaieidaktvlkvvedeCvGC......nlCssvCPvedci 57
                 +kCi+C  C   C++   +ai++ +++++++ +d+C+ C        C +vCP+ + i
  CTQ29371.1  6 TKKCINCDMCEPECPN---EAISM-GESIYEINSDRCTECvghydtPTCQKVCPIPNTI 60
                689************5...9**98.57778999999999954444448*******9987 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2  14.8   1.5e-06     0.002       5      56 .]       5      55 ..       1      55 [. 0.82
   2 !   13.5   2.8   4.6e-05     0.059       3      21 ..      32      56 ..      30      75 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.5e-06
     Fer4_10  5 dddtCirCgkCvkaCPadltsvgakgeaseeeavrkkvekCtgc...g...aCveaCP 56
                 +++Ci+C  C   CP        +++ ++e+  ++++++Ct+c        C+++CP
  CTQ29371.1  5 ITKKCINCDMCEPECPN-------EAISMGESIYEINSDRCTECvghYdtpTCQKVCP 55
                5789*************.......777777777777999999996551567******9 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 4.6e-05
     Fer4_10  3 vidddtCirCg......kCvkaCPa 21
                +i++d+C++C       +C+k+CP 
  CTQ29371.1 32 EINSDRCTECVghydtpTCQKVCPI 56
                6999******88899999******8 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   4.8   3.3e-05     0.042       8      24 .]       8      24 ..       5      24 .. 0.91
   2 !    8.1   4.1    0.0024         3       3      20 ..      32      55 ..      32      60 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.3e-05
      Fer4_6  8 kCigCgdCvrvCPegai 24
                kCi C+ C+  CP  ai
  CTQ29371.1  8 KCINCDMCEPECPNEAI 24
                9************8887 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0024
      Fer4_6  3 eidpdkCigC.gd.....CvrvCP 20
                ei+ d+C+ C g      C +vCP
  CTQ29371.1 32 EINSDRCTECvGHydtptCQKVCP 55
                69*********************9 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   6.7   1.9e-05     0.025       1      32 [.       8      40 ..       8      48 .. 0.86
   2 ?    2.9   4.3      0.17   2.2e+02      56      66 ..      46      56 ..      31      57 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.9e-05
     Fer4_16  1 rCgtCgkCaevCPtnaikek.kekeiearecis 32
                +C++C  C   CP +ai++  + +ei++++c++
  CTQ29371.1  8 KCINCDMCEPECPNEAISMGeSIYEINSDRCTE 40
                6*****************885778899999876 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.17
     Fer4_16 56 gCdiCqdvCPa 66
                   +Cq+vCP+
  CTQ29371.1 46 DTPTCQKVCPI 56
                3448*****96 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   2.6   1.8e-05     0.023       2      15 ..       7      20 ..       6      27 .. 0.90
   2 ?    2.2   7.6      0.25   3.2e+02       1      15 [.      35      55 ..      35      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.8e-05
      Fer4_4  2 erCigCgsCvaaCP 15
                ++Ci+C+ C+  CP
  CTQ29371.1  7 KKCINCDMCEPECP 20
                79************ PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.25
      Fer4_4  1 qerCigCg......sCvaaCP 15
                ++rC++C        C  +CP
  CTQ29371.1 35 SDRCTECVghydtpTCQKVCP 55
                69***9985555556999999 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  13.2     0.022        28       3      62 ..       7      55 ..       5      84 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.022
      Fer4_8  3 ekCieCgaCqsaCp....vlrrtkkhlldargeaaedvqeeqvleeeealwsCttcga...CtevCp 62
                +kCi+C +C+ +Cp    +            ge +  + ++++        +C++      C++vCp
  CTQ29371.1  7 KKCINCDMCEPECPneaiS-----------MGESIY-EINSDR------CTECVGHYDtptCQKVCP 55
                69***********932220...........222222.334444......333333322444666666 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   5.6   0.00013      0.16      44      59 ..       7      22 ..       5      24 .. 0.76
   2 ?    2.3   2.5       0.2   2.5e+02      44      57 ..      36      55 ..      22      56 .. 0.51
   3 ?    4.9   1.5     0.031        39       1      25 [.      37      67 ..      36      84 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00013
     Fer4_17 44 slCieCgeCerkCPqg 59
                ++Ci+C +Ce +CP++
  CTQ29371.1  7 KKCINCDMCEPECPNE 22
                5788888888888875 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.2
     Fer4_17 44 slCieCg......eCerkCP 57
                ++C+eC        C+++CP
  CTQ29371.1 36 DRCTECVghydtpTCQKVCP 55
                45555531111113555555 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.031
     Fer4_17  1 rCiqCgy......ClpeCpsyeaydnepkkl 25
                rC++C        C ++Cp  + + ++p+ +
  CTQ29371.1 37 RCTECVGhydtptCQKVCPIPNTILKDPAHV 67
                5888863335566999999877777766655 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   3.1     0.024        30      21      39 ..       6      22 ..       1      35 [. 0.77
   2 ?   13.1   1.7   4.9e-05     0.063      20      43 ..      34      61 ..      23      74 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.024
                HTT----TT-HHHHCSTT- CS
     Fer4_20 21 AsRClqCkkapcvkgCPve 39
                 ++C++C   +c+ +CP e
  CTQ29371.1  6 TKKCINC--DMCEPECPNE 22
                689****..89*****975 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4.9e-05
                HHTT----T....T-HHHHCSTT---HH CS
     Fer4_20 20 eAsRClqCk....kapcvkgCPveidip 43
                +++RC +C     +++c+k CP+ ++i 
  CTQ29371.1 34 NSDRCTECVghydTPTCQKVCPIPNTIL 61
                689*****64444788*******99885 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.4    0.0056       7.2       1      15 []       9      23 ..       9      23 .. 0.91
   2 ?    9.1   3.8    0.0022       2.8       1      12 [.      38      55 ..      38      58 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0056
      Fer4_3  1 CtgCgaCvevCPvgA 15
                C++C  C+  CP+ A
  CTQ29371.1  9 CINCDMCEPECPNEA 23
                ****99******866 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0022
      Fer4_3  1 CtgC.g.....aCvevCP 12
                Ct C g     +C +vCP
  CTQ29371.1 38 CTECvGhydtpTCQKVCP 55
                999964889989****** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 681.91
//
Query:       CTQ29372.1  [L=126]
Description: holo-(acyl-carrier-protein) synthase 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-24   85.9   0.0    2.3e-24   85.7   0.0    1.0  1  ACPS            4'-phosphopantetheinyl transferase superfamil
  ------ inclusion threshold ------
      0.025   14.6   0.0       0.04   14.0   0.0    1.3  1  Tecti-min-caps  Tectiviridae, minor capsid


Domain annotation for each model (and alignments):
>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.0   2.5e-28   2.3e-24       1     114 []       5     122 ..       5     122 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 2.5e-28
                 EEEEEEEEHHHHH.HHH-----HHHHHS-HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTS-SSSS--GGG-EEEE-TTS-EEEE-S-SSEEEEEE CS
        ACPS   1 gvGiDieklsrlrkrvkrrgakilkrifteeErkllkssdeearaelfarlWaaKEAllKalgpglrklldfksievledstgrptlellseakkkawk 99 
                 g+G+Di+++ r++  + r+g+++++r++++ E++++++ +++ r  ++a+++a+KEA+ Kalg+g+r+ l f+++ev +d+ g+p l+l +ea+  a +
  CTQ29372.1   5 GLGTDIVEIARIEAVIARSGDRLARRVLSDHEWSIWEQHQQPVR--FLAKRFAVKEAAAKALGTGIRNGLAFNQFEVYNDELGKPKLRLWGEANLLAER 101
                 79************************************888888..***************************************************** PP

                 EE-..........SSEEEEEE CS
        ACPS 100 leslkid......kdyviavv 114
                 ++++ i+      + y++a+v
  CTQ29372.1 102 MGVSAIHvtladeRHYACATV 122
                 *******99999888888875 PP

>> Tecti-min-caps  Tectiviridae, minor capsid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.5e-06      0.04      41      79 ..      42      79 ..      34      84 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.5e-06
                    -S----S--S----SS----------------------- CS
  Tecti-min-caps 41 qarqfmpflqgphravaeqtyhaigtgiqmgqtfnqpli 79
                    q +q + fl     av e + +a+gtgi+ g +fnq  +
      CTQ29372.1 42 QHQQPVRFLA-KRFAVKEAAAKALGTGIRNGLAFNQFEV 79
                    5556666665.4569********************9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 955.30
//
Query:       CTQ29373.1  [L=243]
Description: Pyridoxine 5'-phosphate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.6e-109  362.3   3.9   8.6e-109  362.1   3.9    1.0  1  PdxJ          Pyridoxal phosphate biosynthesis protein PdxJ
    0.00015   21.3   2.2     0.0015   18.0   2.2    2.4  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> PdxJ  Pyridoxal phosphate biosynthesis protein PdxJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.1   3.9  9.6e-113  8.6e-109       2     234 .]       6     238 ..       5     238 .. 0.99

  Alignments for each domain:
  == domain 1  score: 362.1 bits;  conditional E-value: 9.6e-113
                 EEEE-HHHHHHHHCCSSS-S-HHHHHHHHHCCT.SEEEEE--TT-SSS-HHHHHHHHHH-SSEEEEEEESSHHHHHHHHHH--SEEEEE--SCCCCSTT CS
        PdxJ   2 LgVnidhvAtlRnarggnePdvveaaelaeeaGAdgitvhlreDrRhiqdeDveelkelvktelnlEmalteemleialelkpeqvtLVPekreeltte 100
                 LgVnidh+AtlRnarg+ +Pd+v+aa++ae+aGAdgitvhlreDrRhi+d+Dv+ l+++++t++nlEma+teeml+ia+e+kp+ ++LVPekr+e+tte
  CTQ29373.1   6 LGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLHTRMNLEMAVTEEMLTIACETKPHFCCLVPEKRQEVTTE 104
                 9************************************************************************************************** PP

                 SSB-TGGCHCCHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHCT-SEEEEETHHHHHHCCHHHHHHHHHHHHHHHHHHHHTT-EEEEETT--TTTCHHH CS
        PdxJ 101 gGldvakeeeklkevikelkeagirvslFidpdkeqieaaaelgadvvELhtgaYaeaaeeeereeelerlkeaaklakelgLevnaGHgLnyenvkai 199
                 gGldva++++k+++++++l +agi vslFid+d++qi+aaa++ga+++E+htg Ya+a++++e+++eler+++aa++a++lgL+vnaGHgL+y+nvkai
  CTQ29373.1 105 GGLDVAGQRDKMRDACQRLADAGILVSLFIDADEAQIKAAADVGAPYIEIHTGCYADAKTDAEQARELERIAKAATYAASLGLKVNAGHGLTYHNVKAI 203
                 ***********************************************************99************************************** PP

                 HTSTTEEEEEE-HHHHHHHHHH-HHHHHHHHHHHC CS
        PdxJ 200 akipeieelnIGhaliaealfvGleeavremkeli 234
                 a++pe++elnIGha+i +a++ Gl+eav+emk+l+
  CTQ29373.1 204 AALPEMHELNIGHAIIGRAVMSGLKEAVAEMKRLM 238
                 ********************************997 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   2.2   1.7e-07    0.0015      64     127 ..     127     189 ..      31     206 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.7e-07
                   S..HHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEE CS
  AP_endonuc_2  64 r..reesvdalkraielaaaLGapllvlhpGtagagpkgseeeawerlaeslneladyaekegvkl 127
                         ++da + +i++aa++Gap++ +h+G    +++   ++  +r  e++ ++a ya+  g k+
    CTQ29373.1 127 GilVSLFIDADEAQIKAAADVGAPYIEIHTG---CYADAKTDAEQARELERIAKAATYAASLGLKV 189
                   26666678888899*****************...889999999999999***********999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1856.64
//
Query:       CTQ29374.1  [L=245]
Description: gap repair protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-23   80.8   0.0    8.2e-23   80.2   0.0    1.3  1  RecO_N    Recombination protein O N terminal
    5.7e-23   81.5   0.1    1.1e-22   80.6   0.1    1.5  1  RecO_C    Recombination protein O C terminal


Domain annotation for each model (and alignments):
>> RecO_N  Recombination protein O N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   9.1e-27   8.2e-23       5      78 ..       4      76 ..       1      78 [. 0.96

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 9.1e-27
                EEEEEEEEEEEETTSEEEEEEEETT.EEEEEEEET-..TTSTTTTTS-TT-EEEEEEESSS-SSEEEEEEEEEE CS
      RecO_N  5 kteaiVLksrkygEsdlivtlfTrehGkvsalargarksksrlrallqpftllevqlrkkgrgLktlkqaelik 78
                 ++a+VL+sr+++E++l++++fT+e+G+v+++a+gar+++s l+++lqpft+l v++  ++++ ktl++ae ++
  CTQ29374.1  4 WQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLVRFG-GRGEVKTLRSAEAVS 76
                589*******************************************************.************987 PP

>> RecO_C  Recombination protein O C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.1   1.2e-26   1.1e-22       4     157 .]      83     226 ..      80     226 .. 0.92

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 1.2e-26
                 HHHHHHHHHHHHHHHHHS-SSS--HHHHHHHHHHHHHHHHSS.-HHHHHHHHHHHHHHHTTS----SB-TTT--BS--EE-TTT.....SSEE-TTT-S CS
      RecO_C   4 lerlaaasylaElldrllpeeepnpeLFdlllatLdaLdeas.daalallvfelrlLallGyapdldsCaacgekialaafspswggllcsecaakapa 101
                 + +l+ ++y++El++r+l+ e +  eLF  +l++++aL++as ++++al++fel lL +lGy+ d+ +Ca +ge++++++ + +++     +++     
  CTQ29374.1  83 GITLYSGLYVNELISRVLEHETRFSELFFDYLHCIQALAGASgSPEPALRRFELALLGHLGYGVDFLHCAGSGEPVDDTMTYRYRE----EKGFIASLV 177
                 679***************************************666666666******************************99976....888888888 PP

                 S----HHHHHHHHHTTTS-HHHHHHS---GGGHHHHHHHHHHHHHHHSS..S-SGGG CS
      RecO_C 102 grplspetlallrlllrgdleklgelkvspeelrellrllrayleehler.plksre 157
                   + +  +++l +l++r     +     + ++lr+++r++r  l+ +l++ plksre
  CTQ29374.1 178 IDNNTFTGHHLKALASRE----FP----DVDTLRAAKRFTRIALKPYLGGkPLKSRE 226
                 888899999999999999....88....999************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1844.23
//
Query:       CTQ29375.1  [L=301]
Description: membrane-associated, 16S rRNA-binding GTPase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-24   86.1   0.1    3.3e-24   85.1   0.1    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
    4.7e-20   71.2   0.5    1.9e-19   69.2   0.8    2.0  1  KH_2          KH domain
    3.3e-15   56.0   0.3    5.1e-15   55.3   0.3    1.2  1  FeoB_N        Ferrous iron transport protein B
    5.9e-09   35.7   1.2    1.3e-06   28.1   1.2    2.5  1  GTP_EFTU      Elongation factor Tu GTP binding domain
      3e-08   33.7   1.3    0.00029   20.8   0.1    2.3  2  RsgA_GTPase   RsgA GTPase
    6.1e-08   32.9   0.5    8.4e-05   22.7   0.2    2.3  2  Dynamin_N     Dynamin family
    2.1e-07   30.5   0.0    3.5e-07   29.7   0.0    1.3  1  AIG1          AIG1 family
    7.8e-06   25.7   0.3    8.3e-05   22.4   0.3    2.2  1  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
    0.00021   20.9   0.1     0.0067   16.0   0.1    2.7  2  Ras           Ras family
    0.00024   21.4   0.0    0.00048   20.4   0.0    1.5  1  AAA_22        AAA domain
     0.0057   16.9   1.0      0.059   13.6   0.4    2.5  2  Roc           Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.012   14.3   0.0      0.018   13.7   0.0    1.2  1  DUF521        Protein of unknown function (DUF521)
      0.016   14.8   2.0       0.69    9.5   0.2    2.3  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.017   15.1   0.0      0.036   14.1   0.0    1.6  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
      0.023   14.1   0.0      0.043   13.2   0.0    1.5  1  SRPRB         Signal recognition particle receptor beta subun
      0.057   13.9   0.3      0.085   13.4   0.3    1.6  1  ABC_tran      ABC transporter
      0.058   12.6   0.0       0.45    9.7   0.0    2.1  2  NB-ARC        NB-ARC domain
      0.073   12.5   0.0       0.11   11.9   0.0    1.3  1  PcrB          PcrB family
       0.12   12.8   0.3       0.42   11.0   0.2    2.1  2  AAA_16        AAA ATPase domain


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.1   3.5e-27   3.3e-24       2     114 .]      11     125 ..      10     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 85.1 bits;  conditional E-value: 3.5e-27
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHH....HHHHHHHHHHCTSEEEEEEETTTTCSHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseek....glgkaflaleeadlillvvdaseeklkplde 95 
                 vaivGrpNvGKStL+n+l+g+  +i+s+k++tTr+ + g  +++  + + vDtpG +++++++     + + a  ++ +++l+++vv+   + ++++de
  CTQ29375.1  11 VAIVGRPNVGKSTLLNKLLGQkISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPG-LHMEEKRAinrlMNKAASSSIGDVELVIFVVE-G-TRWTQDDE 106
                 8*******************9679***************7775559*********.65222322343355555555778********9.5.46****** PP

                 HHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  96 eleelleeakkplilvlnk 114
                  + + l++ak p+il++nk
  CTQ29375.1 107 MVLNKLRDAKAPVILAVNK 125
                 ******************8 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.8     2e-22   1.9e-19       1      77 [.     209     285 ..     209     286 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 2e-22
                 HHHHHHHHHT.ECET..EEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEEEEE.EETTTG CS
        KH_2   1 eipeslavei.kkag..vskveIertanrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVklniv.kVkkpe 77 
                 e+p+s++vei ++     ++++I    n++i+v+re+q+++vIG +G++ik+ig e+rkd++++++ +V+l+++ kVk+ +
  CTQ29375.1 209 ELPYSVTVEIeRFVSneRGGYDI----NGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWvKVKSGW 285
                 79********7766666******....****************************************************99 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.3   5.5e-18   5.1e-15       3     153 ..      11     166 ..      10     169 .. 0.86

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 5.5e-18
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT.EEEEEEE----SSSSSSSHHHHHHHHHHH.CTSSSEEEEEEEGGGHHHHHHHH. CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg.keveivDlPGiYslsayseeekvardfll.eeepdvvvnvvdatnlernLyLt. 98 
                 va+vG pnvGk+tl+n+l g+k ++      t  ++ + ++++g +++  vD PG +  ++ +++  + +       ++++v+ vv+ t+  ++  ++ 
  CTQ29375.1  11 VAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGpYQAIYVDTPGLHMEEKRAINRLMNKAASSsIGDVELVIFVVEGTRWTQDDEMVl 109
                 89*************************99999999988888888899999*******99999998887776655247899*********9988765551 PP

                 HHHHHTTSSEEEEEETHHHHHHTTEEE.-HHHHHHHHT.S-EEEEBTTTTBTHHHHH CS
      FeoB_N  99 lqllelgvpvvlalnmideaekkgiei.dlkkLsekLg.vpvvktsakkkegieell 153
                  +l + ++pv+la+n++d++++k   + +l+ L+++++ +++v++sa+++++++++ 
  CTQ29375.1 110 NKLRDAKAPVILAVNKVDNVQEKADLLpHLQFLASQMNfLDIVPISAETGTNVDTIA 166
                 5899***************9988766626788999999669************9986 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   1.2   1.3e-09   1.3e-06       6     193 ..      11     174 ..       9     175 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.3e-09
                 EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETT CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdav 104
                 ++i+g  + GK+TL+ +Ll ++  i++++++++ +r++  + e   + i +++   ++e   +k+ in +        +k  + ++  ++++++vv+ +
  CTQ29375.1  11 VAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGPYQAIYVDTPGLHME---EKRAINRL-------MNKAASSSIGDVELVIFVVEGT 99 
                 67899999999999999998888877766655555555666666666666666666666...45555433.......3344444455555555555544 PP

                 TBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 105 eGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvellp 193
                 +  ++  e vl+ +++ + p+i+++NK+D+++++ + +++     l          + +  ++  +v++Sa +g +v+t+   + ++lp
  CTQ29375.1 100 R-WTQDDEMVLNKLRDAKAPVILAVNKVDNVQEKADLLPHLQF--L----------ASQM-NFLDIVPISAETGTNVDTIAAIVRKHLP 174
                 2.56677999*********************888877765332..3..........3344.4889****************99999998 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   3.1e-07   0.00029     102     162 ..      11      67 ..       4      72 .. 0.71
   2 !   11.9   0.1   0.00016      0.15      30     100 ..     100     172 ..      70     175 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.1e-07
                  EEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETT...TEEEESS-SSS CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelae...gglliDtPGfr 162
                  +++vG   vGKStL+n+ll++   k++ +s+k      TT+++ +    e   +++ +DtPG++
   CTQ29375.1  11 VAIVGRPNVGKSTLLNKLLGQ---KISITSRK----AQTTRHRIVGIHTEgpyQAIYVDTPGLH 67 
                  7899****************9...44444444....3466666543333223478899***986 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00016
                  --HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH....HHHHHHHHHHHTT.SEEEE--TTTHTTHHHHHHHCTTS CS
  RsgA_GTPase  30 lslnlldrfLvlaeekgiepvivlnKiDlleeee....eleelkeelealg.yevllvsaktkegleelkellkdk 100
                    ++  + +L  + ++++++++++nK+D ++e+     +   l+   ++++ ++++ +sa+t+++++++++ ++++
   CTQ29375.1 100 RWTQDDEMVLNKLRDAKAPVILAVNKVDNVQEKAdllpH---LQFLASQMNfLDIVPISAETGTNVDTIAAIVRKH 172
                  4444556678889999****************9964433...3333344443699999***********9988775 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.2   8.9e-08   8.4e-05       1      35 [.      11      45 ..      11      58 .. 0.85
   2 !    8.3   0.0    0.0024       2.2     106     165 ..      61     124 ..      50     127 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 8.9e-08
                EEEEEBTTTTHHHHHHHHHTS--S---SSS---S- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrp 35
                +a+vG  + GKS++ln+Llg++i  ++    T r 
  CTQ29375.1 11 VAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRH 45
                79***********************9988666554 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0024
                 EE---B-SSSGTTS.....HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEE CS
   Dynamin_N 106 vDlPGldsvnkrdq.....elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvl 165
                 vD+PGl+  +kr       + + + i +  ++++v++    +++ +   l+++ d k   ++ v+
  CTQ29375.1  61 VDTPGLHMEEKRAInrlmnKAASSSIGDVELVIFVVEGTR-WTQDDEMVLNKLRDAKAPVILAVN 124
                 9*******99998888998899999999999999999877.999999999999999998888887 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   3.8e-10   3.5e-07       5     109 ..      13     114 ..      10     123 .. 0.74

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 3.8e-10
                 EESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SC.CCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETTB-SHHHHH CS
        AIG1   5 lvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPgl.fdlsvsadkiskeivrclllseegihalllvlslgrfteedek 102
                 +vG+  +GkS+  N +lg+k+  ++ +aq+ t++      t+   +   +DTPgl ++ +     i++ + +  + s   ++ +++v++ +r t++de+
  CTQ29375.1  13 IVGRPNVGKSTLLNKLLGQKISITSRKAQT-TRHRIVGIHTEGPYQAIYVDTPGLhMEEKRA---INRLMNKAASSSIGDVELVIFVVEGTRWTQDDEM 107
                 8*******************9777744444.4443333444444555568*****4444444...4444446667888889****************** PP

                 HHHHHHH CS
        AIG1 103 alktlke 109
                 +l++l++
  CTQ29375.1 108 VLNKLRD 114
                 ****986 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.3   8.8e-08   8.3e-05       4     141 ..      11     169 ..       9     171 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 8.8e-08
   PduV-EutP   4 illiGkvgsGKttLtqalkgeelk..Ykktqaief..........sdev.iDtPGeylenrklysalivtsaeadv.....ialvqdate..eesvfpp 82 
                 + ++G+ ++GK tL ++l g++++   +k q++ +          ++++ +DtPG ++e+++  + l+  +a++++     + +v++ t+  ++  +  
  CTQ29375.1  11 VAIVGRPNVGKSTLLNKLLGQKISitSRKAQTTRHrivgihtegpYQAIyVDTPGLHMEEKRAINRLMNKAASSSIgdvelVIFVVEGTRwtQDDEMVL 109
                 5689**************998875115789987652233333333344459************999999888765544111444444332111122222 PP

   PduV-EutP  83 gfasvfnkeviGiitkidlaedeenieaveelL.ksaGaekifevsavekegieellkyl 141
                 +  +  + +vi  + k+d +++++++    ++L +++    i  +sa + ++++++ + +
  CTQ29375.1 110 NKLRDAKAPVILAVNKVDNVQEKADLLPHLQFLaSQMNFLDIVPISAETGTNVDTIAAIV 169
                 223334669***********9999988877777357899999999999999999998765 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   7.1e-06    0.0067       2     153 ..      11     166 ..      10     174 .. 0.76
   2 ?    1.2   0.0      0.27   2.5e+02      28      53 ..     253     278 ..     249     279 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.1e-06
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETT..SGGGHHHHHHHHTTE.....SEEEEEEETTBHHHHHTHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAG..qeefkslrelyyrda.....egillvyditsresfenvkkw 93 
                 + +vG  +vGK++ll++   +k + ++ +       +  i+++g  ++    DT G   ee +++++l+ + a     ++ l+++ ++ ++  ++ +  
  CTQ29375.1  11 VAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGP-YQAIYVDTPGlhMEEKRAINRLMNKAAsssigDVELVIFVVEGTRWTQDDEMV 108
                 579****************99998877777755666666666554.455557****5547777777766555411122567899988888777777777 PP

                 HHHHHHHSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHH CS
         Ras  94 veeikrvaeenvpivLvGnKvDleekravsteegeelakelg.lkfletSAktnenveeaf 153
                 ++++++ +    p++L  nKvD  +++a    + + la++++ l  + +SA+t +nv+++ 
  CTQ29375.1 109 LNKLRDAKA---PVILAVNKVDNVQEKADLLPHLQFLASQMNfLDIVPISAETGTNVDTIA 166
                 777776655...8*********99999999999999******999************9764 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.27
                 CTTTSSEEEEEEEEEETTEEEEEEEE CS
         Ras  28 yesTigvdfytkeievdgkevkleiw 53 
                 +++Tig++  +   e+ +  v+le+w
  CTQ29375.1 253 KIKTIGIEARKDMQEMFEAPVHLELW 278
                 679**********************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   5.1e-07   0.00048       3     118 ..       6     148 ..       3     171 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5.1e-07
      AAA_22   3 ktagilvvtGesGtGKTtllrrlleqldeeakaee..............erpevvfvtlpsst..sskdllrellralglelka........erlssee 77 
                 +++g+++++G + +GK+tll++ll q+ + +  ++               + + ++v+ p++   + + + r + +a  ++  +        e+ +  +
  CTQ29375.1   6 SYCGFVAIVGRPNVGKSTLLNKLLGQK-ISITSRKaqttrhrivgihteGPYQAIYVDTPGLHmeEKRAINRLMNKAASSSIGDvelvifvvEGTRWTQ 103
                 5799*********************97.44444448898888888888555555599999998855555555555555555555999999999999999 PP

      AAA_22  78 llealeqalraravielliiDEaqhlrs.....eealeeLrsllnl 118
                   e++ + lr+++++++l +  ++++ +       +l++L s +n+
  CTQ29375.1 104 DDEMVLNKLRDAKAPVILAVNKVDNV-QekadlLPHLQFLASQMNF 148
                 99999999999999888888888888.3345678888888888876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.4   6.2e-05     0.059       2      32 ..      11      41 ..      11     128 .. 0.62
   2 ?   -3.0   0.0       8.7   8.2e+03      28      41 ..     253     265 ..     243     278 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.2e-05
                EEEESSTTSSHHHHHHCHCT-CCC-EEETTT CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfsekeksti 32
                v +vG  +vGK++ll++++ +k+s ++++  
  CTQ29375.1 11 VAIVGRPNVGKSTLLNKLLGQKISITSRKAQ 41
                679****************999975544432 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.7
                 EETTTTEEEEEEEC CS
         Roc  28 ekstigvdfltkev 41 
                 + +tig++  + ++
  CTQ29375.1 253 KIKTIGIEARK-DM 265
                 45667776643.33 PP

>> DUF521  Protein of unknown function (DUF521)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.9e-05     0.018     267     353 ..      31     120 ..      17     123 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.9e-05
      DUF521 267 ekititkedleevleel.skakeekvdlvalGcPhlsleElrelaellkgkkkkv..kvelwvttsrevkeeaerlglveklekaGvkvl 353
                 +ki+it ++ +++++++   ++e++ +++++ +P l++eE r++++l+++   ++  +vel++++ + ++ + +++ +++kl++a + v+
  CTQ29375.1  31 QKISITSRKAQTTRHRIvGIHTEGPYQAIYVDTPGLHMEEKRAINRLMNKAASSSigDVELVIFVVEGTRWTQDDEMVLNKLRDAKAPVI 120
                 789*************99889999************************7777766679****************999******9988775 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1      0.02        19       4      22 ..      12      31 ..      10      49 .. 0.80
   2 ?    9.5   0.2   0.00073      0.69     103     170 ..      80     147 ..      41     152 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.02
                EEEESTTCCHHHHHHHHH.C CS
        cobW  4 vltGflGsGKTtLlnhll.e 22
                 ++G +  GK+tLln+ll +
  CTQ29375.1 12 AIVGRPNVGKSTLLNKLLgQ 31
                68899999*********952 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00073
                 SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC...HHHHHHHHHHHH CS
        cobW 103 eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldee.allekleerlrqln 170
                 +   +s   ++ v++vv+++++++++e   +k++d  +a  +l +nK+D ++e+ +ll +l+  ++q+n
  CTQ29375.1  80 KAASSSIGDVELVIFVVEGTRWTQDDEMVLNKLRDA-KAPVILAVNKVDNVQEKaDLLPHLQFLASQMN 147
                 444555668999**********87777777777774.55556779********9666666666666665 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.8e-05     0.036      56     102 ..     117     171 ..      96     174 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.8e-05
  MMR_HSR1_Xtn  56 ipclyvlNKiDlisle.....eldelare...pnsvviSaekelnldeLkekiwe 102
                    p+++++NK+D ++++     +l+ la++    ++v+iSae+++n+d++   + +
    CTQ29375.1 117 APVILAVNKVDNVQEKadllpHLQFLASQmnfLDIVPISAETGTNVDTIAAIVRK 171
                   5899********8765222223455555465559*************99876655 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.6e-05     0.043       6      86 ..      11      99 ..       6     135 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.6e-05
                EEEE-STTSSHHHHHHHHHHS....S---B---SS-EEETTG...GGTT-SEEEETT....-GCCSHHHHHHHHHHGG..EEEEEEEEETT CS
       SRPRB  6 vllvGlsdsGKTslftrLttd....svkktvtSqessaalkvksekgskltliDfPG....heklrqklleklkakss..lkglvfvvDSt 86
                v +vG  + GK +l+++L+ +    + +k++t  +  +    ++e   +   +D PG    +++  ++l++k   +s   +  ++fvv+ t
  CTQ29375.1 11 VAIVGRPNVGKSTLLNKLLGQkisiTSRKAQTTRHRIVGI--HTEGPYQAIYVDTPGlhmeEKRAINRLMNKAASSSIgdVELVIFVVEGT 99
                779***************9983332333333333333333..4566677888*****5332233445666665555435578889999877 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3     9e-05     0.085      14      37 ..      11      34 ..       6     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9e-05
                EEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkp 37
                vaivG+   GKStLl+ l+g+   
  CTQ29375.1 11 VAIVGRPNVGKSTLLNKLLGQKIS 34
                89****************998764 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00048      0.45      19      46 ..       9      34 ..       1      43 [. 0.79
   2 ?    0.3   0.0      0.34   3.2e+02      21      71 ..     150     200 ..     138     215 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00048
                CSEEEEEEESTTSSHHHHHHHHCCSHCC CS
      NB-ARC 19 qslvvalvGmgGvGKttlakqilnksde 46
                +  +va+vG++ vGK+tl+++ l +  +
  CTQ29375.1  9 G--FVAIVGRPNVGKSTLLNKLLGQKIS 34
                4..9***************998876555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.34
                 EEEEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEEEEEEESXXHHHHHHHX CS
      NB-ARC  21 lvvalvGmgGvGKttlakqilnksdevegrFdsvawvvvsktdkseeilet 71 
                 ++v ++   G    t+a+ + +++ e +++F+       s+ ++ +ei+++
  CTQ29375.1 150 DIVPISAETGTNVDTIAAIVRKHLPEAIHHFPEDYITDRSQRFMASEIIRE 200
                 4777788888888899***************98888888888887777653 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.11      36      92 ..      96     154 ..      77     186 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
                 EECSTCHHHHHHHHHHHHHCTSSS-EEEEESSGGG--TTSSEE....EEEEETTBSSTTTT CS
        PcrB  36 igGsqsvtldntvrllkkvsriklPivlepsnvegvvryaDal....FvmsllnsanadWi 92 
                 + G+   + d+   +l+k +  k P++l + +v++v ++aD+l    F+ s +n  +   i
  CTQ29375.1  96 VEGTRWTQDDEM--VLNKLRDAKAPVILAVNKVDNVQEKADLLphlqFLASQMNFLDIVPI 154
                 556665555554..57888889*******************98333355555555444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00044      0.42      24      71 ..       8      58 ..       2     152 .. 0.78
   2 ?   -2.6   0.0       6.5   6.1e+03      56      88 ..     185     209 ..     163     222 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00044
      AAA_16 24 pelvllsGesGvGKsslvrellr...alekdggiflrgkcdqlesaipysa 71
                ++ v ++G + vGKs+l+++ll    +++ +++ ++r + +  +++ py+a
  CTQ29375.1  8 CGFVAIVGRPNVGKSTLLNKLLGqkiSITSRKAQTTRHRIVGIHTEGPYQA 58
                47899*************999954555555566666666666666666655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.5
      AAA_16  56 lrgkcdqlesaipysalaqalareellrqllde 88 
                 ++ + +++       +  +++ re+l+r l++e
  CTQ29375.1 185 ITDRSQRF-------MASEII-REKLMRFLGAE 209
                 33344444.......455555.66777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2281.71
//
Query:       CTQ29376.1  [L=226]
Description: RNase III [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-34  118.0   0.0      4e-34  117.5   0.0    1.2  1  Ribonucleas_3_3  Ribonuclease-III-like
    3.8e-20   72.5   0.0    7.7e-20   71.5   0.0    1.5  1  Ribonuclease_3   Ribonuclease III domain
    6.1e-15   55.7   0.0      1e-14   55.0   0.0    1.4  1  dsrm             Double-stranded RNA binding motif
    9.1e-06   25.8   0.0    1.7e-05   25.0   0.0    1.5  1  DND1_DSRM        double strand RNA binding domain from DEAD E


Domain annotation for each model (and alignments):
>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   0.0   8.9e-38     4e-34       2     125 ..      20     141 ..      19     144 .. 0.95

  Alignments for each domain:
  == domain 1  score: 117.5 bits;  conditional E-value: 8.9e-38
  Ribonucleas_3_3   2 eelleqaltHkSfangrkghNerLefLGdavLklsvseyllekaek.degeltklraslvseeslaeiAkelgLgkvlrlrkgeeetegsgrek 94 
                      +ell+qaltH+S    +++hNerLefLGd++L+++++++l++++ + deg+++++ra lv+ ++laeiA+e++Lg++lrl+ ge +++g +re+
       CTQ29376.1  20 QELLQQALTHRSA---SSKHNERLEFLGDSILSFVIANALYHRFPRvDEGDMSRMRATLVRGNTLAEIAREFELGECLRLGPGELKSGGFRRES 110
                      69**********5...589***********************98877*********************************************** PP

  Ribonucleas_3_3  95 vladaleAliGAiyldkgaevaqefveekil 125
                      +lad++eAliG ++ld++++++++++++++ 
       CTQ29376.1 111 ILADTVEALIGGVFLDSDIQNVERLILSWYQ 141
                      **************************99875 PP

>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   1.7e-23   7.7e-20       1     104 [.      38     127 ..      38     128 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 1.7e-23
                     HHHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHHHCTTCHCCHCHH..............HHCCSTTCHC..TSHHHHHHH CS
  Ribonuclease_3   1 erLeflGDavlklaittylfetypdahegrlsklrsklvsnenlarlakklglpkflrasefdpprnwlppgyklsddekeddd..adkvladvv 93 
                     erLeflGD++l ++i ++l++++p  +eg++s++r+ lv+ ++la++a++++l + lr                l+ +e ++ +  ++++lad+v
      CTQ29376.1  38 ERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAEIAREFELGECLR----------------LGPGELKSGGfrRESILADTV 116
                     8*********************************************************................999999988788999****** PP

                     HHHHHHHHHHC CS
  Ribonuclease_3  94 EAliGaiylds 104
                     EAliG ++lds
      CTQ29376.1 117 EALIGGVFLDS 127
                     *********97 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   2.3e-18     1e-14       1      67 []     156     223 ..     156     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 2.3e-18
                 HHHHHHHHHHHTT.SEEEEEEEEEESSTSSSEEEEEEEEETT.EEEEEEEESSHHHHHHHHHHHHHHHH CS
        dsrm   1 pKskLqeycqkkg.kppnyeyvseegpphslpkFvvtvkvng.klygsGvgsnKKeAeqsAAedalekL 67 
                 pK++Lqey+q ++ + p y +v + g +h  ++F++++ v g  ++  G+gs++++Aeq+AAe+al+kL
  CTQ29376.1 156 PKTRLQEYLQGRHlPLPSYLVVQVRGEAHD-QEFTIHCQVSGlSEPVVGTGSSRRKAEQAAAEQALKKL 223
                 8************55555666666666665.*********999************************98 PP

>> DND1_DSRM  double strand RNA binding domain from DEAD END PROTEIN 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   3.8e-09   1.7e-05       2      80 .]     155     224 ..     154     224 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 3.8e-09
   DND1_DSRM   2 savqlLeelCeknkwgsPvYelhseagpdgkllflYkVvipgietslkgvvvifmpdklastkeeAkelaAeqvLeaLe 80 
                 +++  L+e+ + + ++ P Y +   +g ++ + f+  + ++g++ +      +++   + s+  +A+++aAeq+L++Le
  CTQ29376.1 155 DPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEP------VVG---TGSSRRKAEQAAAEQALKKLE 224
                 677889***************************************9......555...44666778899*******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1876.63
//
Query:       CTQ29377.1  [L=324]
Description: leader peptidase (signal peptidase I) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-21   73.9   0.2    1.3e-20   73.1   0.2    1.4  1  Peptidase_S24  Peptidase S24-like
    6.9e-09   35.6   0.0    5.4e-07   29.5   0.0    2.6  2  Peptidase_S26  Signal peptidase, peptidase S26


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.2   1.4e-24   1.3e-20       1      63 [.      86     159 ..      86     169 .. 0.92

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 1.4e-24
                    EXXSSTTCCTXXTTXEEEEECTS................---TTSEEEEEETTCE.-EEEEEEEEETTEEEEE.SSTTST CS
  Peptidase_S24   1 rvpGdSMeptlldGdlilVdkfs................epkrGdivvfrlpgee.eayiKrviglpgdrvllasnneyp 63 
                    ++p++SM+ptll+Gd+ilV+kf+                 pkrGdivvf++p+++  +yiKr +glpgd+v +      +
     CTQ29377.1  86 QIPSGSMMPTLLIGDFILVEKFAygikdpiyqktlietgHPKRGDIVVFKYPEDPrLDYIKRAVGLPGDKVTY------D 159
                    69*********************************************************************92......2 PP

>> Peptidase_S26  Signal peptidase, peptidase S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.0    0.0079        71      50      67 ..     142     159 ..     111     184 .. 0.64
   2 !   29.5   0.0     6e-11   5.4e-07      91     138 .]     259     302 ..     241     302 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0079
  Peptidase_S26  50 vpllKrVlalagqevcva 67 
                    +  +Kr ++l+g++v+  
     CTQ29377.1 142 LDYIKRAVGLPGDKVTYD 159
                    345788888888888754 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 6e-11
  Peptidase_S26  91 lpslqgcrvlaegelfllskevadSfDsRYfGpvpassvigvarpvlt 138
                    l+++    ++++g++f+++++ ++S DsRY+G vp+++++g+a+++++
     CTQ29377.1 259 LATW----IVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGKATAIWM 302
                    4444....59***********************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2404.01
//
Query:       CTQ29378.1  [L=599]
Description: GTP-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-52  178.3   0.1    2.5e-52  177.3   0.1    1.5  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    1.1e-49  167.1   1.4    1.7e-49  166.4   1.4    1.3  1  LepA_C       GTP-binding protein LepA C-terminus
    2.4e-19   69.1   0.0    5.3e-19   68.1   0.0    1.6  1  EFG_C        Elongation factor G C-terminus
      9e-12   45.2   0.4    2.1e-11   44.1   0.4    1.7  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    3.6e-05   23.8   0.0    0.00016   21.7   0.0    2.1  2  MMR_HSR1     50S ribosome-binding GTPase
     0.0002   21.3   0.0    0.00072   19.6   0.0    1.9  1  EFG_II       Elongation Factor G, domain II
     0.0005   19.7   0.0    0.00091   18.9   0.0    1.4  1  Ras          Ras family
  ------ inclusion threshold ------
       0.04   13.7   0.0       0.08   12.8   0.0    1.4  1  RF3_C        Class II release factor RF3, C-terminal domain
      0.081   12.4   0.0       0.19   11.1   0.0    1.6  1  SRPRB        Signal recognition particle receptor beta subuni


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.3   0.1   1.2e-55   2.5e-52       1     193 [.       2     181 ..       2     182 .. 0.94

  Alignments for each domain:
  == domain 1  score: 177.3 bits;  conditional E-value: 1.2e-55
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE...TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SE CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle...ketkkylinliDtPGHvdFskevirglrvlDg 96 
                 k+irn++ii+h+DhGK+TL+dr+++ +g  s+++++a+   vlD+++ ErergiTik++ ++l+   +++++y++n+iDtPGHvdFs ev+r+l++++g
  CTQ29378.1   2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQ---VLDSMDLERERGITIKAQSVTLDykaSDGETYQLNFIDTPGHVDFSYEVSRSLAACEG 97 
                 69******************************888775...9**********************8755******************************* PP

                 EEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU  97 avlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvellp 193
                 a+lvvda +Gve+qt  + + a +++++++ ++NK+D + a+ +++++e+++ +          g +       v++Sa++g gv+++le lv+ +p
  CTQ29378.1  98 ALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVADEIEDIV----------GID---AHDAVRCSAKTGVGVTDVLERLVRDIP 181
                 ***************************************************777..........444...3579******************99887 PP

>> LepA_C  GTP-binding protein LepA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   1.4   8.6e-53   1.7e-49       1     106 [.     487     592 ..     487     593 .. 0.99

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 8.6e-53
                 ESSCB-GGG-EEEETTTHHHHHHHHHHHHHHHS---SS-EEEEEEETTEEEEEEEE----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      LepA_C   1 ingekvdaLslivhrskaeergrklvekLkeliprqlfevaiqaaigskviaretikalrkdvlaklyggditrkkKllekqkegkkrlkkignveipq 99 
                 inge+vdaL+li+h+++a  rgr+lvek+k+liprq+f++aiqaaig+++iar+t+k+lrk+vlak+yggd++rkkKll+kqkegkkr+k++gnve+pq
  CTQ29378.1 487 INGERVDALALITHNDNAPYRGRELVEKMKDLIPRQQFDIAIQAAIGNHIIARSTVKQLRKNVLAKCYGGDVSRKKKLLQKQKEGKKRMKQVGNVELPQ 585
                 8************************************************************************************************** PP

                 XXXXXXX CS
      LepA_C 100 eaflavl 106
                 eafla+l
  CTQ29378.1 586 EAFLAIL 592
                 *****99 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   2.6e-22   5.3e-19       2      85 ..     399     482 ..     398     486 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 2.6e-22
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-T.THHHCHHHCTTTS-EEEEEEEEEEE--HHH CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeli.gfateLrslTkGegsfsmefsgYeevpgdk 85 
                 l EPi ++++  p+e++g+vi+++ ++rG +++m ++ +++v +++eiP+ae++ +f+++L+s ++G++s+++ f++++ ++ + 
  CTQ29378.1 399 LREPIAECHMLLPQEFLGNVITLCVEKRGVQTNMVYH-GKQVALTYEIPMAEVVlDFFDRLKSTSRGYASLDYNFKRFQASNMVR 482
                 78***********************************.****************************************9987665 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.4     1e-14   2.1e-11       1      74 []     205     275 ..     205     275 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 1e-14
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETE.EESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhe.dedeavaganaGvivaikgledaiivGdtlt 74 
                  G+v+l+r+ +Gt++kGd++++  ++t++     +  +++t+++ d +e+ +g+++++ +aik++  a  vGdtlt
   CTQ29378.1 205 GVVSLVRIKNGTMRKGDKIKV--MSTGQV-YNADRLGIFTPKQvDRTELKCGEVGWLVCAIKDILGA-PVGDTLT 275
                  89*******************..888555.8899999999999899999*****************8.*****96 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   8.3e-08   0.00016       8     114 .]      13     132 ..       6     132 .. 0.59
   2 ?   -1.6   0.0       1.4   2.9e+03      32      55 ..     365     388 ..     358     432 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 8.3e-08
                 TTSSHHHHHHHHHT...............STEEESSSTTSSSSEEEEEEE.....ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1   8 pNvGKStLinaltg...............ekaivsdkpgtTrdinegrvk.....lkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas 86 
                    GKStL  ++++               +    +++ g T++ +  +++      +  +++++DtpG ++    + +++++++    ++ +llvvda 
  CTQ29378.1  13 IDHGKSTLSDRIIQicgglsdremeaqvlDSMDLERERGITIKAQSVTLDykasdGETYQLNFIDTPGHVD---FSYEVSRSLA---ACEGALLVVDAG 105
                 567*********966666766666655542334455556666666665553332111578********655...2224444444...489*******88 PP

                 TTCSHHHHHHHHHHHHH..TTSEEEEEEES CS
    MMR_HSR1  87 eeklkpldeeleellee..akkplilvlnk 114
                 ++ +  + ++l+++ +    + +++ vlnk
  CTQ29378.1 106 QG-V--EAQTLANCYTAmeMDLEVVPVLNK 132
                 44.5..334555554332234445666665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.4
                 SSSSEEEEEEEETTEEEEEEECGG CS
    MMR_HSR1  32 tTrdinegrvklkgkeielvDtpG 55 
                 tT  ++ ++v++  ke++ vD p 
  CTQ29378.1 365 TTAPTVVYEVETTSKEVIYVDSPS 388
                 666677888887789999999997 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.6e-07   0.00072       4      73 ..     293     365 ..     291     367 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.6e-07
      EFG_II   4 PvislaiepkskadedklskaLarlleEDptlrverdeeTk...etilsGmGelHleivverlkreykvevel 73 
                 P + + + p s++d + + +aL +l+  D +l +e ++ T     +    +G lH+ei+ erl+rey++++ +
  CTQ29378.1 293 PQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSTAlgfGFRCGFLGLLHMEIIQERLEREYDLDLIT 365
                 66677778999*********************9998888863223444558******************9876 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   4.6e-07   0.00091      30     160 ..      52     180 ..      43     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 4.6e-07
                 TTSSEEEEEEEEEET.TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGG-SS-.HHH CS
         Ras  30 sTigvdfytkeievd.gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDleekravs.tee 126
                  Ti +++ t + +++ g++++l+  DT G  +f+   + ++  +eg+llv d  +    +++++ ++ +++  e    +v v nK+Dl      + ++e
  CTQ29378.1  52 ITIKAQSVTLDYKASdGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE----VVPVLNKIDLPAADPERvADE 146
                 466566555555543599**********************************9999988888888877766555....77888*****98443220334 PP

                 HHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 127 geelakelglkfletSAktnenveeafeellrei 160
                  e++        + +SAkt  +v++++e+l+r+i
  CTQ29378.1 147 IEDIVGIDAHDAVRCSAKTGVGVTDVLERLVRDI 180
                 45555555578899*****************987 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     4e-05      0.08      19      79 ..     303     366 ..     284     388 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4e-05
                 SGGGHHHHHHHHHHHHHCTSSEEEEET.TS...S-EEEEESSTHHHHHHHHHHHHHH---EEEE CS
       RF3_C  19 dplkrkqlrkgleqLaeEGavqvfkeeeag...eelilgaVGqLQfeVveeRlknEYgvevrle 79 
                  +  +  +r +l +L+   a   +++e+++     +  g +G L +e+++eRl++EY++++ ++
  CTQ29378.1 303 SSDDYEAFRDALGKLSLNDASLFYEPESSTalgFGFRCGFLGLLHMEIIQERLEREYDLDLITT 366
                 55556666666666666666666666544432223567999*****************998765 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.7e-05      0.19      35      84 ..      55     103 ..      31     134 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.7e-05
                 SS-EEETTG...GGT..T-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEE CS
       SRPRB  35 qessaalkvksekgs..kltliDfPGheklrqklleklkaksslkglvfvvD 84 
                  ++s++l++k+++g+  +l++iD PGh+ + ++++ +    +   g + vvD
  CTQ29378.1  55 KAQSVTLDYKASDGEtyQLNFIDTPGHVDFSYEVSRS---LAACEGALLVVD 103
                 367888888776665115677************9988...445556666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 4605.97
//
Query:       CTQ29379.1  [L=159]
Description: RseC protein involved in reduction of the SoxR iron-sulfur cluster [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-33  115.4   0.8    1.8e-33  115.2   0.8    1.0  1  RseC_MucC  Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.8     1e-37   1.8e-33       1     129 [.       8     139 ..       8     140 .. 0.97

  Alignments for each domain:
  == domain 1  score: 115.2 bits;  conditional E-value: 1e-37
   RseC_MucC   1 VvaveggtaeVeierksaCgsCaakssC......klsaleskekrleveneigakvGdkVevgieeksllkaallvYllPllllilgallgsallgsse 93 
                 Vv++++g+a+V+++ k +C+sCa++++C      kl    +++++++v++e+++++G+kVe+gi e+sll +a+lvY+ Pl++l+++a ++++l ++s+
  CTQ29379.1   8 VVSWHNGVAQVHCDVKASCSSCASRAGCgsrvlnKL--GPQTSHTISVPCEQPLAAGQKVELGIAESSLLGSAMLVYMAPLAGLFVMASIFQML-FASD 103
                 899***************************976555..99******************************************************.8*** PP

   RseC_MucC  94 llaalgallglvlgflivrllskrlkkkskfqpvil 129
                 +++++gallg v gfl++r ls rl++++++qpvil
  CTQ29379.1 104 IASLCGALLGGVGGFLVARGLSPRLAARQSWQPVIL 139
                 ***********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1179.74
//
Query:       CTQ29380.1  [L=318]
Description: anti-sigma factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-60  202.2   0.0    6.6e-60  201.7   0.0    1.2  1  MucB_RseB    MucB/RseB N-terminal domain
      1e-27   96.2   0.0    1.8e-27   95.4   0.0    1.4  1  MucB_RseB_C  MucB/RseB C-terminal domain
    9.5e-05   22.2   0.0    0.00015   21.5   0.0    1.2  1  LolA_like    Outer membrane lipoprotein-sorting protein


Domain annotation for each model (and alignments):
>> MucB_RseB  MucB/RseB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.7   0.0   1.1e-63   6.6e-60       3     175 ..      28     207 ..      26     210 .. 0.95

  Alignments for each domain:
  == domain 1  score: 201.7 bits;  conditional E-value: 1.1e-63
   MucB_RseB   3 ealLermseAarqlnYegtfvyqrggeleslrivHavddggeyerlesLdGpprevirrndevscfepeskavsvesrkikdslpallpadlealeehY 101
                  alL++m+ A+++lnYe++fv ++++ +eslr++Ha  +++ +++l++LdGp+rev+ r+ e+s+fep+ ++++++++ i+dslp+l+++d+++l+  Y
  CTQ29380.1  28 GALLQQMNLASQSLNYELSFVSISKQGVESLRYRHARLNNQPLAQLLQLDGPRREVVLRGTEISYFEPGLDPFTLNGDYIVDSLPSLVYSDFKRLSAAY 126
                 689************************************************************************************************ PP

   MucB_RseB 102 efrllGreRvAgreaqvvrilPkDqlRYgyrlwiDeetgLlLksdlldedgevLEqfaftslelge.......elekaelp 175
                 +f+++Gr+R+A+r ++v+r++++D +RY++  w+D et+L+L++dlld+dge+LEqf+++s+++g+       +l+ka+lp
  CTQ29380.1 127 DFISVGRTRIADRLCDVIRVVARDGTRYSFIAWLDAETKLPLRVDLLDRDGETLEQFRVVSFNVGDnvsasmeTLAKANLP 207
                 ******************************************************************665555555555555 PP

>> MucB_RseB_C  MucB/RseB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.0   3.1e-31   1.8e-27       2      97 .]     218     313 ..     217     313 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 3.1e-31
                  BXXXSEEES---TT-EEEEEEEEE-SSSS-EEEEEEEESSS-EEEEEEEE--TT-.-EEEEETTEEEEEEEETTEEEEEEESS-HHHHHHHHHTEE CS
  MucB_RseB_C   2 keasgWqlkwlpaGFkkvsesrrklaaseeeveqllysDGLasvsvfvepaseeseegllrqgattivsrrvgdvevtvvGevPlatakriaesie 97 
                  k++ +W ++wlp+G ++vs+s+r+l++ + +ve++lysDGL+s+s+++++a+++s+++llr+g++t+ ++++++ e+tvvGe+P++takri +si+
   CTQ29380.1 218 KANFNWAPTWLPQGVTEVSSSQRRLPTFDGPVESRLYSDGLFSFSININRATAASSDQLLRTGRRTVSTTVRDNAEITVVGELPPQTAKRISDSIK 313
                  6789*****************************************************************************************995 PP

>> LolA_like  Outer membrane lipoprotein-sorting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.6e-08   0.00015      59     135 ..     116     188 ..     110     204 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.6e-08
                 HHHHC--SCCCEEEEEEEEEEETTEEEEEEEEEESS.TTSSECEEEEEEETTT--EEEEEEEETTS-EEEEEEEEEE CS
   LolA_like  59 yeDlssrevedythellgeeevggkdcyvleltpkdaadvsYskivlwvdketylplkvefydksgkllKtltvsdi 135
                 y+D+ +r ++ y++  +g + +  + c v++ +++d   + Ys  ++w+d et lpl+v++ d++g+ l +++v ++
  CTQ29380.1 116 YSDF-KRLSAAYDFISVGRTRIADRLCDVIRVVARD--GTRYS-FIAWLDAETKLPLRVDLLDRDGETLEQFRVVSF 188
                 8888.6899***************************..68997.579********************9988887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2511.95
//
Query:       CTQ29381.1  [L=216]
Description: anti-sigma factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-36  124.2   1.0    2.1e-36  124.2   1.0    1.9  2  RseA_N    Anti sigma-E protein RseA, N-terminal domain
    9.1e-26   89.9   1.5    9.1e-26   89.9   1.5    3.3  4  RseA_C    Anti sigma-E protein RseA, C-terminal domain
  ------ inclusion threshold ------
      0.042   14.1   9.6       0.11   12.8   9.6    1.7  1  RskA      Anti-sigma-K factor rskA


Domain annotation for each model (and alignments):
>> RseA_N  Anti sigma-E protein RseA, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   1.0   3.6e-40   2.1e-36       1      86 [.       1      86 [.       1      87 [. 0.99
   2 ?   -1.4   0.2      0.58   3.5e+03      19      34 ..     172     187 ..     162     201 .. 0.72

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 3.6e-40
      RseA_N  1 mqkEkLSAlmDGelldkelieelaqdkelqqtWarYhligdvlRgeapevleldiaervaaaLeaEpahlalkaapesqptpeqak 86
                mqkEkLSAlmDGe+ld+el++el++ +e+qqtW++Yhli+d+lRg+++evl++di++rv+aa+e+Ep+++++  +pesqp+p+q++
  CTQ29381.1  1 MQKEKLSALMDGETLDNELLNELSRSSEMQQTWESYHLIRDTLRGDTAEVLQFDISARVMAAIENEPVRQTAPLIPESQPAPHQWR 86
                9************************************************************************************7 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.58
      RseA_N  19 lieelaqdkelqqtWa 34 
                  i+++ qd elq + +
  CTQ29381.1 172 RINAMLQDYELQRRLH 187
                 5677777777777665 PP

>> RseA_C  Anti sigma-E protein RseA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3      0.31   1.9e+03       2      15 ..      66      79 ..      65      84 .. 0.76
   2 ?    1.2   0.1     0.076   4.5e+02      10      33 ..     103     129 ..      95     133 .. 0.63
   3 !   89.9   1.5   1.5e-29   9.1e-26       1      55 []     132     186 ..     132     186 .. 0.97
   4 ?   -3.5   0.2       2.2   1.3e+04      35      36 ..     198     199 ..     190     208 .. 0.52

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.31
      RseA_C  2 qPvlnTlPfvGsas 15
                +Pv +T P+    +
  CTQ29381.1 66 EPVRQTAPLIPESQ 79
                6999****975555 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.076
      RseA_C  10 fvGsaspVSynvpseqe...qqaatee 33 
                 ++G a+ VS+ v    +    q+++++
  CTQ29381.1 103 QMGVAACVSLAVIVGVQhynGQSDSAQ 129
                 899999999988643333544444444 PP

  == domain 3  score: 89.9 bits;  conditional E-value: 1.5e-29
      RseA_C   1 eqPvlnTlPfvGsaspVSynvpseqeqqaateeqlqeqrrRinayLqdheLQrrL 55 
                 e+Pv+nTlP++G+aspVS++vp++ + ++ +++q+qeqrrRina+Lqd+eLQrrL
  CTQ29381.1 132 EAPVFNTLPMMGKASPVSLGVPADASAGSGQQAQVQEQRRRINAMLQDYELQRRL 186
                 58*********************99999**************************8 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 2.2
      RseA_C  35 lq 36 
                  q
  CTQ29381.1 198 TQ 199
                 11 PP

>> RskA  Anti-sigma-K factor rskA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   9.6   1.8e-05      0.11       7      79 ..      57     174 ..      54     213 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
                 HHHHHTT-X......................................XXXXXXXXXXXXXX...................................... CS
        RskA   7 arilaalaatpqaaaaaaaaaaapppaaapaararr...........laaaaAaalllvlg...................................... 56 
                 ar++aa++++p +++a+  + ++p+p  +++ +  +           + +aa + l++++g                                      
  CTQ29381.1  57 ARVMAAIENEPVRQTAPLIPESQPAPHQWRQMPFWNkvrpwassltqMGVAACVSLAVIVGvqhyngqsdsaqqpeapvfntlpmmgkaspvslgvpad 155
                 89*************99999998888777776665599*******986666666666777767777766666666666666666665555555553333 PP

                 ................XXXXXXXXXXXXX CS
        RskA  57 ......qlavasaaldplrqsaaqaeavv 79 
                       q          ++q ++q +++ 
  CTQ29381.1 156 asagsgQ----------QAQVQEQRRRIN 174
                 3322221..........222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1738.61
//
Query:       CTQ29382.1  [L=191]
Description: RNA polymerase, sigma 24 (sigma E) factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-19   69.1   0.2    4.8e-19   67.8   0.2    1.8  1  Sigma70_r4_2  Sigma-70, region 4
      6e-18   64.4   0.3    1.2e-17   63.4   0.3    1.5  1  Sigma70_r2    Sigma-70 region 2
    6.2e-11   41.6   0.0    1.6e-10   40.3   0.0    1.7  1  Sigma70_r4    Sigma-70, region 4
    1.3e-08   35.0   0.2    5.2e-08   33.0   0.2    1.9  1  Sigma70_ECF   ECF sigma factor
     0.0002   21.1   0.0    0.00053   19.7   0.0    1.8  1  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.2   1.3e-22   4.8e-19       2      53 ..     129     180 ..     122     181 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 1.3e-22
                   HHHHHHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHH CS
  Sigma70_r4_2   2 qalrealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkk 53 
                   q + + +++Lpe+ r++++lr+l+glsy+EIA+++++++gtV+sr++RAr++
    CTQ29382.1 129 QIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180
                   677799********************************************87 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.3   3.3e-21   1.2e-17       1      70 [.      25      91 ..      25      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 3.3e-21
                HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2  1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70
                lv ry+ +v +l+ r+++ g d+ D+vQe f+++wra+++f+ + + +f +wl+ria n+a+++l  ++r
  CTQ29382.1 25 LVVRYQHKVASLVSRYVPPG-DIADVVQESFVKAWRALDSFR-GDS-AFYTWLYRIAVNTAKNYLVAQGR 91
                6889**************98.*********************.999.9*****************98887 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   4.4e-14   1.6e-10       2      47 ..     135     180 ..     134     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 4.4e-14
                 HHHS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrk 47 
                 ++sLpe+ r+ ++lr ++gl++eEI+++++ + ++Vr++++rA++ 
  CTQ29382.1 135 IESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREA 180
                 689****************************************986 PP

>> Sigma70_ECF  ECF sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.2   1.5e-11   5.2e-08       7     181 ..      10     183 ..       3     186 .. 0.70

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 1.5e-11
  Sigma70_ECF   7 lleqvkdGdaeaaeqllelvydeLrrlagsklknerreetledtaL.vfeaflrlvdkekfpdlsgr..dhlfalaaeamrrilidhaRrrkrqkRGG 101
                  l+e v++Gd++a + l  +++ ++ +l+++ +    + +   d+a  v e+f+++ +  ++   ++   + l+++a++  +  l+++ Rr  +     
   CTQ29382.1  10 LVERVQKGDQKAFNLLVVRYQHKVASLVSRYV----PPG---DIADvVQESFVKAWRALDSFRGDSAfyTWLYRIAVNTAKNYLVAQGRRPPSS---- 96 
                  7899**********999999999999998776....333...3443389999999985444444443114466777777888888888887775.... PP

  Sigma70_ECF 102 dvvraeldeeeds...vdsdspdelleLdealerl.....lsldpeqarlvelrkleGlsveEiAeklgvskrtverrlalaRawler 181
                  dv  +e ++ e s   +++ s+ e l+L e l ++     +sl+++ +  + lr l+Gls eEiA+ +++   tv+ r   aR+ + +
   CTQ29382.1  97 DVDANEAENFE-SggaLKEISNPENLMLSEELRQIvfrtiESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 183
                  66666633333.32333334445556677766664222214588888889**************************999999987665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.5e-07   0.00053       4      40 ..     140     177 ..     137     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.5e-07
      HTH_23   4 ereRlrillllaeGlsvreIAreLgvsrrTvy.rwlkr 40 
                 e+ R+ i l  ++Gls++eIA++++++  Tv+ r+ ++
  CTQ29382.1 140 EDLRMAITLRELDGLSYEEIAAIMDCPVGTVRsRIFRA 177
                 6677777777777*******************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1474.49
//
Query:       CTQ29383.1  [L=60]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 490.84
//
Query:       CTQ29384.1  [L=539]
Description: quinolinate synthase, L-aspartate oxidase (B protein) subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.7e-102  342.2   2.1   5.6e-102  341.9   2.1    1.1  1  FAD_binding_2   FAD binding domain
    9.7e-14   51.5   0.0    2.2e-13   50.3   0.0    1.6  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
    1.4e-10   40.9   1.4    1.2e-05   24.7   0.2    2.9  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    7.7e-10   38.9   6.6    4.2e-09   36.4   6.5    2.0  1  DAO             FAD dependent oxidoreductase
    0.00053   19.4   0.5       0.83    9.0   0.1    2.2  2  GMC_oxred_N     GMC oxidoreductase
    0.00057   19.2   5.3       0.27   10.4   0.3    3.2  4  Thi4            Thi4 family
    0.00094   18.5   0.2     0.0017   17.7   0.2    1.4  1  FAD_binding_3   FAD binding domain
     0.0018   17.0   0.3       0.12   11.1   0.1    2.9  3  HI0933_like     HI0933-like protein
     0.0025   16.9   0.1     0.0043   16.2   0.1    1.3  1  Lycopene_cycl   Lycopene cyclase protein
     0.0027   17.9   0.2     0.0088   16.3   0.2    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.035   13.4   0.2       0.11   11.7   0.1    1.8  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.055   12.5   1.4       0.77    8.8   1.4    2.1  1  GIDA            Glucose inhibited division protein A
      0.056   12.6   0.2        1.3    8.1   0.1    2.1  2  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
      0.081   13.2   0.0        0.2   11.9   0.0    1.6  1  Retrotrans_gag  Retrotransposon gag protein
       0.12   12.4   0.3        1.7    8.7   0.1    2.5  2  NAD_binding_9   FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.9   2.1  4.7e-105  5.6e-102       1     417 []      10     392 ..      10     392 .. 0.95

  Alignments for each domain:
  == domain 1  score: 341.9 bits;  conditional E-value: 4.7e-105
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    Dv++iGsG+AGL+ Al++ae+   v+v++k++  +g+t+++qGgi+av       +++ ds+e+h++dtl a+++l+d+++v +++++a+  v++L
     CTQ29384.1  10 DVLIIGSGAAGLSLALRLAEHSS-VTVLSKGPISEGSTFYAQGGIAAVF------DET-DSIESHVEDTLIAGAGLCDRHAVTFVASNARSCVQWL 97 
                    9******************9987.*************************......445.************************************* PP

                    HHTT----B..CCTS....SB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCT.EEEEESEEEEEEEECTT.......EEEEEE CS
  FAD_binding_2  97 eelgvpfsr..tedg....pvdvrelGglsatartlhdaadarretlvtghallarlvesarkag.vdfqerteadeLivedg.......rvtGav 178
                     ++gv f++  +        +++++ Gg+s++ r+lh aada      tg+a+  +lv++a++++ ++++er +a++Liv d+       rv+Ga+
     CTQ29384.1  98 IDQGVLFDTqvQ--AngeeSYHLTREGGHSHR-RILH-AADA------TGKAVETTLVDKALAHPnIRILERSNAVDLIVSDKiglpgtrRVVGAW 183
                    *********553..24478*************.****.***9......********************************9888899999****** PP

                    EEETTTTCEEEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT CS
  FAD_binding_2 179 venpesgrevrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeG 274
                    ++n++++r +++ akavvlatgG+ +          ++++ttn+   +Gdg+a+a+rag+++++  +e+ qfhPt+l+ ++ ++  L+tealrgeG
     CTQ29384.1 184 IWNRNKERVETCSAKAVVLATGGAAK----------VYQYTTNPDVSSGDGIAMAWRAGCRVAN--LEFNQFHPTALYHPQARNF-LLTEALRGEG 266
                    *************************9..........****************************..************5444444.688******* PP

                    -EEE-TTSSBTH......GGGS-HHHHHHHHH.HHHHTTTSCCBEEEE-TT.SSHHHHHHHSHHHHHHHHHCCT......S-TTTSEEE....... CS
  FAD_binding_2 275 gilvdkdGrrFm......nelasrdvvsrailekeiaeggseanvyldashgldaegleatleaineeaangldkdfgrgidpadrpipgpfyavk 364
                    + l + dG+rFm      +ela+rd+v+rai  +e+++ g  ++++ld+sh  +++ ++++++ i+e++   l+      id ++ p+p       
     CTQ29384.1 267 AHLKRPDGTRFMpdfderGELAPRDIVARAID-HEMKRLGV-DCMFLDISH-KPEAFVRQHFPMIYEKLLG-LG------IDLTKDPVP------- 345
                    ********************************.99998998.9********.************6666655.99......*********....... PP

                    EEEEEEEES-EEEBETTSBESTTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 365 vvpaqhytmgGvetdengrvldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    vvpa+hyt+gGv +d+ngr+       ++GLYA+Gev  +g+hganr+++nsl
     CTQ29384.1 346 VVPAAHYTCGGVMVDDNGRT------DVDGLYAIGEVSYTGLHGANRMASNSL 392
                    ********************......*************************98 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   1.8e-16   2.2e-13       2      88 ..     441     521 ..     440     526 .. 0.91

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 1.8e-16
                     HHHHHHHHHHSSSSB-HHHHHHHHHHHHHHHHHHTTB--S---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH--S-BTTBEBTTS-S CS
  Succ_DH_flav_C   2 keLgkimqkkvgvfRteegLkealkelkelrerlknvkvtdkskvaNqelvealelanllelAeaiaksAlaRkESrGaHaredfpe 88 
                     +eL+ +m+++vg++Rt  +L++al+++  l+++l++     + +v N    + lel+nl+++Ae+i+++A+ RkESrG H+  d+p+
      CTQ29384.1 441 HELRLLMWDYVGIVRTTRRLERALRRITMLQQELDEYYA--RFRVSN----NLLELRNLVQVAELIVRCAMLRKESRGLHYTLDYPQ 521
                     79999******************************7766..555556....5789******************************96 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.2   9.8e-09   1.2e-05       2     113 ..      10     210 ..       9     220 .. 0.81
   2 !   13.0   0.1   3.8e-05     0.045     256     278 ..     355     377 ..     340     391 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.8e-09
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH....................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx....................................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias....................................... 57 
                  dv++iG+G+AGl++al+la+++  ++l     +eg +++ +  ++ ++ ++ + ++ ++                                       
   CTQ29384.1  10 DVLIIGSGAAGLSLALRLAEHSSVTVLSKgpiSEGSTFYAQGGIAAVFDETDSIESHVEdtliagaglcdrhavtfvasnarscvqwlidqgvlfdtq 107
                  89******************64433333359988888899999999999999888888899999***********9999999999***********99 PP

                  ..........................................HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC...........TCEEEEEESE CS
                  ..........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxx RF
  Pyr_redox_2  58 ..........................................evvkklnqgielllgeevvkidpgkkkvklekkke...........gdeekiaydk 102
                                                                    +i+ l ++++v+++    k+ l  +++           +  e+  +++
   CTQ29384.1 108 vqangeesyhltregghshrrilhaadatgkavettlvdkalA-----HPNIRILERSNAVDLIVSD-KIGLPGTRRvvgawiwnrnkERVETCSAKA 199
                  9999999999999999999999999999988888865543331.....2347777777777776655.6777666668899999987777778888** PP

                  EEE---EEE-B CS
                  xxxxxxxxxxx RF
  Pyr_redox_2 103 lvlAtGssprd 113
                  +vlAtG+ ++ 
   CTQ29384.1 200 VVLATGGAAKV 210
                  ******87765 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3.8e-05
                  TEEE--TTSBESSTTEEE-GGGC CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 256 ggivvdeflrtnvpgiyaiGDva 278
                  gg+ vd+++rt v+g+yaiG v 
   CTQ29384.1 355 GGVMVDDNGRTDVDGLYAIGEVS 377
                  8999*****************98 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   6.5   3.5e-12   4.2e-09       1     205 [.      10     209 ..      10     231 .. 0.63

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 3.5e-12
                 EEEEECTSHHHHHHHHHHHHTT.EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg.VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeelea 98 
                 dv+iiG+G +Gls A+ La++  Vt+l kg  +++g++  ++g +++ ++++     +   ++++l   + l+++           + ++a++++++ +
  CTQ29384.1  10 DVLIIGSGAAGLSLALRLAEHSsVTVLSKG-PISEGSTFYAQGGIAAVFDETD---SIESHVEDTLIAGAGLCDR---------HAVTFVASNARSCVQ 95 
                 8********************99*******.7778************776444...3334444444333444444.........456666655545555 PP

                 HHHHHHHH.....HHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHH.....HHHHHHHT.T-EEEESECEEEEEEEE.......TCE CS
         DAO  99 ldkllall.....leagldaelldaeevrelepalpgllgalfypdtgqvdpakltaa.....laraaeal.Gveilegtevtgleeed.......gkv 179
                 + + ++ l     +++g +++ l++e              + +++   ++++a +t       l ++a a+  ++ile++++++l   d        +v
  CTQ29384.1  96 WLIDQGVLfdtqvQANGEESYHLTRE--------------GGHSHR-RILHAADATGKavettLVDKALAHpNIRILERSNAVDLIVSDkiglpgtRRV 179
                 54433332333333344443445443..............223333.4444444443344444777776663589999999999756555666555555 PP

                 EEEE....EECTEEEE..EEEEEEE--GGGHH CS
         DAO 180 wgve....rttpgend..aadavVnaaGawsd 205
                 +g      +  +++++  +a+avV+a+G  ++
  CTQ29384.1 180 VGAWiwnrN--KERVEtcSAKAVVLATGGAAK 209
                 555588533..33332245588******8764 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00082      0.98       2      34 ..      10      40 ..       9      73 .. 0.75
   2 !    9.0   0.1    0.0007      0.83     194     257 ..     140     207 ..     100     209 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00082
  GMC_oxred_N  2 delveggGsagsvvAaRLsedpstsvlvleagg 34
                 d l++g+G+ag  +A RL+e+ s  v+vl  g+
   CTQ29384.1 10 DVLIIGSGAAGLSLALRLAEHSS--VTVLSKGP 40
                 789****************9865..55666665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0007
  GMC_oxred_N 194 tarawLrpalerpnleiltgakaekiil.....egrkkravGVeasdkkgtvkrlvvaakevvvaaGal 257
                  ++++ +++al++pn +il++ +a  +i+      + ++r+vG  + + +++ +  + +ak vv+a G +
   CTQ29384.1 140 VETTLVDKALAHPNIRILERSNAVDLIVsdkigLPGTRRVVGAWIWNRNKE-RVETCSAKAVVLATGGA 207
                  4456667788***************99999999788******999999998.77788889999998865 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.3   0.00023      0.27      18      44 ..       9      35 ..       5      56 .. 0.82
   2 ?   -2.7   0.0       2.3   2.8e+03      13      39 ..      63      89 ..      51      98 .. 0.74
   3 !    9.2   0.0   0.00054      0.65      98     171 ..     139     209 ..     122     220 .. 0.71
   4 ?   -0.7   0.1      0.57   6.8e+02     207     232 ..     362     388 ..     354     390 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00023
                EEEEEE--SHHHHHHHHHHHHCTTS-E CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkv 44
                 Dv+i+G+G++GL+ a  la++  + v
  CTQ29384.1  9 CDVLIIGSGAAGLSLALRLAEHSSVTV 35
                7*******************9955544 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.3
                HHHTEEEEEEE--SHHHHHHHHHHHHC CS
        Thi4 13 lkyaesDvvivGaGssGLtaayylakk 39
                ++  + D +i GaG +   a   +a +
  CTQ29384.1 63 IESHVEDTLIAGAGLCDRHAVTFVASN 89
                455667899999998887777777665 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00054
                 HHHHHHHHHHHTSTTEEEEESEEEEEEEEET..B.TEEEEEEEEEHHHHTCTTTSS.-B-EEEEEEEEEE--GSSST CS
        Thi4  98 lftstllskvlqlanvkllnavaveDlivre..g.egvaGvvinwtlvelahdtqscvDPlvirakvvvdatGhdge 171
                  + +tl+ k+l+ +n+++l+   + Dliv +  g  g + vv  w     +          +  ak+vv atG  ++
  CTQ29384.1 139 AVETTLVDKALAHPNIRILERSNAVDLIVSDkiGlPGTRRVVGAWIWNRNKERV------ETCSAKAVVLATGGAAK 209
                 46789**************************55344555567677655555433......34466666666666655 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.57
                 HECEEETTEEE-T.HHHHHHHT-EB-- CS
        Thi4 207 ktrevvpnlyvaG.mevaevdganRmG 232
                 + r  v++ly+ G +  + ++ganRm 
  CTQ29384.1 362 NGRTDVDGLYAIGeVSYTGLHGANRMA 388
                 6788899***988456789*******6 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2   1.4e-06    0.0017       2      32 ..       9      38 ..       8      45 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.4e-06
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvek 32
                   +dVlI+G+G aGl+lal L+e+  +v+++ k
     CTQ29384.1  9 CDVLIIGSGAAGLSLALRLAEH-SSVTVLSK 38
                   9********************9.88888876 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1    0.0001      0.12       2      32 ..      10      39 ..       9      52 .. 0.84
   2 ?    1.7   0.0     0.068        81     150     166 ..     192     208 ..     178     248 .. 0.68
   3 ?    0.1   0.0      0.22   2.6e+02     352     384 ..     349     376 ..     291     383 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 dv++iG GaAGl  A+++a++ ++V++l k+
   CTQ29384.1 10 DVLIIGSGAAGLSLALRLAEH-SSVTVLSKG 39
                 8*****************765.678887765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.068
                  TEEEEESEEEE----SS CS
  HI0933_like 150 eeeleadklvlAtGGlS 166
                   e+++a+++vlAtGG++
   CTQ29384.1 192 VETCSAKAVVLATGGAA 208
                  467899*********87 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.22
                  T-SEEEEEE-GGGB-TTT-BBTTSTTEEE-GGG CS
  HI0933_like 352 kaevTaGGVdlkevssktmeskkvpgLffaGEv 384
                   a  T+GGV ++           v gL+ +GEv
   CTQ29384.1 349 AAHYTCGGVMVDDNGR-----TDVDGLYAIGEV 376
                  6788999998775332.....4689******98 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   3.6e-06    0.0043       1      29 [.      10      35 ..      10      47 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.6e-06
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvl 29
                   Dv++iG+G+AglslA rl+e     +v++
     CTQ29384.1 10 DVLIIGSGAAGLSLALRLAE---HSSVTV 35
                   9*****************33...334444 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   7.3e-06    0.0088       1      29 [.      13      40 ..      13      45 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.3e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   I+G+G++Gl++A +La++  +v++l k++
     CTQ29384.1 13 IIGSGAAGLSLALRLAEH-SSVTVLSKGP 40
                   9****************8.8899988875 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   9.3e-05      0.11       1      34 [.      12      43 ..      12      51 .. 0.85
   2 ?   -2.0   0.0       1.4   1.6e+03     121     134 ..     193     206 ..     187     220 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.3e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgnign 34
                 +IiG G+aGl+ a+ l ++    +++l kg i++
   CTQ29384.1 12 LIIGSGAAGLSLALRLAEHSS--VTVLSKGPISE 43
                 6*************9999886..89*****8876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
  Pyr_redox_3 121 etyeAkkviiAtGe 134
                  et +Ak v++AtG 
   CTQ29384.1 193 ETCSAKAVVLATGG 206
                  56778888888884 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.4   0.00064      0.77       1     154 [.      10     210 ..      10     227 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00064
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE.................................ES-GGGTT--SSSSEEE-T..............THHHH CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi.................................thkldtiaelsCnpsiggi..............akgll 52 
                 dv +iG G AG+  Al +a+    ++L                                                 i g               a++ +
  CTQ29384.1  10 DVLIIGSGAAGLSLALRLAEHSSVTVLSkgpisegstfyaqggiaavfdetdsieshvedtL--------------IAGAglcdrhavtfvasnARSCV 94 
                 7999***************9999999999999999998888888888666666664444432..............22222223332233333367777 PP

                 HHHHHHHT-SHHHHHHHHEEEEEEESTTS-CCC-EEEEEE-H..HHHHHHHHHHHHTSTTEEEEES.-EEEEEECT.......TEEEE..EE...ETTS CS
        GIDA  53 vrEidalggliikaadkagiqfrilNrskGpavralraqvdr..elyskevteklenepnleiiee.eveelivee.......kkvkg..vv...tedg 136
                 +  id+ g l  +   ++g +   l r+ G + r +  ++d   +++++++ +k  ++pn+ i+e+ ++ +liv++       ++v g  +    +e+ 
  CTQ29384.1  95 QWLIDQ-GVLFDTQVQANGEESYHLTREGGHSHRRILHAADAtgKAVETTLVDKALAHPNIRILERsNAVDLIVSDkiglpgtRRVVGawIWnrnKERV 192
                 776666.44444555555555556666667777666555554114555556666666777777654134555555567777776666644441113444 PP

                 -EEEECEEEE--TT-BT- CS
        GIDA 137 etikakavviatGtflkg 154
                 et +akavv+atG   k 
  CTQ29384.1 193 ETCSAKAVVLATGGAAKV 210
                 556677999999984444 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0011       1.3       3      28 ..       9      33 ..       8      40 .. 0.87
   2 ?    2.1   0.0      0.07        83     140     162 ..     188     210 ..     178     219 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0011
  K_oxygenase  3 lDligiGiGpsnLsLailleevkkel 28
                 +D+ +iG G++ LsLa++l+e++  +
   CTQ29384.1  9 CDVLIIGSGAAGLSLALRLAEHS-SV 33
                 8********************98.44 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.07
  K_oxygenase 140 aegeeeelearnlvlgvGtepki 162
                  ++++ e+++a+++vl++G+ +k+
   CTQ29384.1 188 NKERVETCSAKAVVLATGGAAKV 210
                  46677888899999999888776 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00017       0.2      25      72 ..     432     483 ..     417     504 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
  Retrotrans_gag  25 a....sesWkdlkkaflktflpserkdqleeelsslrQgtesvreYvtrfkt 72 
                     +     ++W++l+  + +     +++++le+ l++++  ++ ++eY++rf+ 
      CTQ29384.1 432 ElvviQHNWHELRLLMWDYVGIVRTTRRLERALRRITMLQQELDEYYARFRV 483
                     35555689******999999999***************************75 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1    0.0014       1.7       2      20 ..      13      31 ..      12      51 .. 0.82
   2 ?    0.8   0.0      0.36   4.3e+02     142     155 ..     193     206 ..     173     207 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0014
  NAD_binding_9  2 ivGaGprGlavlerLlara 20
                   i+G G++Gl+++ rL++++
     CTQ29384.1 13 IIGSGAAGLSLALRLAEHS 31
                   9****************96 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.36
  NAD_binding_9 142 aslaadaVvLAlGh 155
                    ++  a+aVvLA+G 
     CTQ29384.1 193 ETCSAKAVVLATGG 206
                    56799*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 4019.88
//
Query:       CTQ29385.1  [L=245]
Description: putative S-adenosyl-L-methionine-dependent methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-13   50.3   0.0    3.9e-13   49.3   0.0    1.5  1  MTS              Methyltransferase small domain
    5.4e-11   43.1   0.0    3.2e-10   40.6   0.0    2.0  2  Methyltransf_25  Methyltransferase domain
    1.9e-09   37.5   0.0    4.3e-09   36.3   0.0    1.5  2  Methyltransf_31  Methyltransferase domain
    9.2e-07   28.5   0.0    1.4e-06   28.0   0.0    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    2.4e-06   26.9   0.0    3.5e-06   26.3   0.0    1.2  1  Methyltransf_3   O-methyltransferase
      3e-06   27.3   0.0    3.9e-06   26.9   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
    7.9e-06   26.4   0.0    0.00013   22.5   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
    1.7e-05   24.6   0.0    2.1e-05   24.3   0.0    1.2  1  UPF0020          Putative RNA methylase family UPF0020
    2.6e-05   23.5   0.0      3e-05   23.2   0.0    1.1  1  RrnaAD           Ribosomal RNA adenine dimethylase
    6.6e-05   22.8   0.0    0.00062   19.6   0.0    1.9  2  Methyltransf_23  Methyltransferase domain
      8e-05   22.4   0.0    0.00011   21.9   0.0    1.1  1  Cons_hypoth95    Conserved hypothetical protein 95
    0.00017   21.4   0.0    0.00025   20.9   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    0.00076   19.4   0.0     0.0011   18.9   0.0    1.1  1  PRMT5            PRMT5 arginine-N-methyltransferase
     0.0099   16.6   0.0      0.031   15.0   0.0    1.8  2  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.042   13.8   0.0    1.5  1  Methyltransf_18  Methyltransferase domain
      0.044   14.8   0.0      0.079   14.0   0.0    1.4  1  Methyltransf_24  Methyltransferase domain
      0.072   12.4   0.0       0.11   11.7   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
      0.077   12.3   0.0        0.1   11.9   0.0    1.1  1  Methyltransf_10  RNA methyltransferase
       0.14   12.3   0.0       0.18   11.9   0.0    1.2  1  FtsJ             FtsJ-like methyltransferase
       0.15   11.8   0.0       0.22   11.2   0.0    1.2  1  Methyltransf_16  Lysine methyltransferase
       0.22   11.2   0.0       0.28   10.9   0.0    1.2  1  Met_10           Met-10+ like-protein


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   4.5e-16   3.9e-13      33     111 ..      46     129 ..      32     178 .. 0.79

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 4.5e-16
                 SEEEEET-TTSHHHHHHHHHTT.C.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTTST..TS-EEEEEE---STTTC CS
         MTS  33 gkvlDlGcGaGvlgaalakesp.eaevtlvdvdarAlesakenleankle..vevvasdvleeve..ekkfdlivsNPPfhagk 111
                 ++vlD+G+G G+l+++la+++  +++v++v+ d +A + a+en+ a+  +  +ev + d+ +  +   ++++li+sNPPf a+ 
  CTQ29385.1  46 KHVLDIGAGSGLLALMLAQRTGdDVHVEAVELDEEAAAQARENALASPWAsrIEVWQADIHQWQPsqTRRYELIISNPPFFAEG 129
                 57****************98761577******************99998888*******98755433799**********7654 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   3.8e-13   3.2e-10       1      71 [.      48     122 ..      48     145 .. 0.89
   2 ?    0.1   0.0       1.6   1.4e+03      22      41 ..     166     185 ..     148     204 .. 0.71

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 3.8e-13
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGB.SSSTTTEEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl..nvefvqgdaedl.pfedgsfDlvvss 71 
                      vLd+G+G+G l+l+la+r g + +v +v+++ee+ ++are+a ++ +  ++e+ q+d++++ p + +++ l++s+
       CTQ29385.1  48 VLDIGAGSGLLALMLAQRTGdDVHVEAVELDEEAAAQARENALASPWasRIEVWQADIHQWqPSQTRRYELIISN 122
                      9*****************9779********************8876689*********998357889*****995 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.6
                      SEEEEEESSHHHHHHHHHHH CS
  Methyltransf_25  22 akvtgvDiseemleaarera 41 
                      + v+ vDi  +++e+ar+  
       CTQ29385.1 166 CVVLPVDIGNAFIERARAMG 185
                      55677999999999999866 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   5.1e-12   4.3e-09       5      82 ..      46     132 ..      43     171 .. 0.81
   2 ?   -1.5   0.0       2.3     2e+03      26      46 ..     163     183 ..     141     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 5.1e-12
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.leklledekfDlilsn.........e 82 
                      ++vlD+G+G+G l++ la++ g++ +v  ++ +eea  +Arena       ++e+ q+di++  +   + +++ li+sn         +
       CTQ29385.1  46 KHVLDIGAGSGLLALMLAQRTGDDVHVEAVELDEEAAAQARENALASPWAsRIEVWQADIHQwQP--SQTRRYELIISNppffaegvpC 132
                      589****************************************99998888***********777..4679********4444443330 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.3
  Methyltransf_31  26 gpkaevvGiDiseeaielAre 46 
                      g+ + v  +Di    ie+Ar+
       CTQ29385.1 163 GFFCVVLPVDIGNAFIERARA 183
                      444557779999999999997 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.6e-09   1.4e-06     163     233 ..      46     122 ..      40     123 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.6e-09
        PrmA 163 eevlDvGtGSGiLaia.aakLga.kkvvavDiDevAvkvakeNaelNkveaklevalseellk.....eekadvivaN 233
                 ++vlD+G+GSG+La+  a++ g   +v av +De A   a+eNa     ++++ev  ++++ +     ++++++i++N
  CTQ29385.1  46 KHVLDIGAGSGLLALMlAQRTGDdVHVEAVELDEEAAAQARENALASPWASRIEVW-QADIHQwqpsqTRRYELIISN 122
                 78************86255566415899*************************994.334332223347889999998 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   4.1e-09   3.5e-06      26     107 ..      24     104 ..       8     110 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4.1e-09
                     TGGGS--HHHHHHHHHHHHHHT--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES- CS
  Methyltransf_3  26 lsemevsvdegqfLslLvklvnakrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekieliegd 107
                        m+v++d g +L+    + + k+vl+iG   G  +L++a+   +D ++ a++ d+ea++ a++    +++a +ie+ ++d
      CTQ29385.1  24 RCAMKVGTD-GILLGAWAPIAGVKHVLDIGAGSGLLALMLAQRTGDDVHVEAVELDEEAAAQARENALASPWASRIEVWQAD 104
                     567888875.889999999**********************************************************99887 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   4.6e-09   3.9e-06      26     104 ..      45     133 ..      40     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 4.6e-09
  Methyltransf_32  26 altvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeatssktltkkve.............a 104
                       ++v+D+GaG g L+ +la+ ++   ++v ++++ ee +++a++ a +    +++r++ ++++i++ + s+t++ ++              a
       CTQ29385.1  45 VKHVLDIGAGSGLLALMLAQ-RTGDDVHVEAVELDEEAAAQARENALASP--WASRIEVWQADIHQWQPSQTRRYELIisnppffaegvpcA 133
                      5789****************.6668************9999888877777..**************99877665544466677766666641 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.6e-07   0.00013       1      68 [.      49     122 ..      49     141 .. 0.90
   2 ?    1.8   0.0      0.45   3.8e+02      11      42 ..     156     189 ..     146     202 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.6e-07
                      EEET-TTSHHHHHHH.HTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCT.SS-TT-EEEEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaeala.krg..arvvgvDlskemlklakekaseegl..kvefvvadaekl.pfednsfDlvvss 68 
                      Ld+G+G+G+la  la ++g   +v +v+l++e+ ++a+e+a  ++   ++e+ +ad+++  p +   + l++s+
       CTQ29385.1  49 LDIGAGSGLLALMLAqRTGddVHVEAVELDEEAAAQARENALASPWasRIEVWQADIHQWqPSQTRRYELIISN 122
                      8**************6666999*******************99999999*********9768888888888776 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.45
                      HHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT CS
  Methyltransf_11  11 aealakrg..arvvgvDlskemlklakekaseeg 42 
                      ae++++ g  + v+ vD+ ++++++a++ +   +
       CTQ29385.1 156 AEHITEEGffCVVLPVDIGNAFIERARAMGWHLR 189
                      55666677779999**********9998776666 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.5e-08   2.1e-05      73     131 ..      66     125 ..      33     172 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.5e-08
                 HHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE---- CS
     UPF0020  73 araelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPY 131
                 + +++++ +++ld+++ ++areNa +  ++ +ie+ qad+ + +  ++  +++i++npP+
  CTQ29385.1  66 TGDDVHVEAVELDEEAAAQARENALASPWASRIEVWQADIHQWQpSQTRRYELIISNPPF 125
                 33778899***********************************9877889*********9 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   3.5e-08     3e-05      33      92 ..      47     112 ..      41     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.5e-08
                 EEEEES-TTTCCHHHHHCC-...SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHH CS
      RrnaAD  33 tvleigpGkGilTeeLakra...kqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpe 92 
                  vl+ig+G G+l   La+r     +v ++Elde+ a+  +++      +++++v ++D+ +++  +
  CTQ29385.1  47 HVLDIGAGSGLLALMLAQRTgddVHVEAVELDEEAAAQARENALaspWASRIEVWQADIHQWQPSQ 112
                 79*******************8667779************988788889**************987 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   7.2e-07   0.00062      24      89 ..      46     122 ..      22     124 .. 0.80
   2 ?    0.9   0.0      0.41   3.5e+02      96     120 ..     146     170 ..     142     205 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 7.2e-07
  Methyltransf_23  24 grvLdiGcGtGillevlren.gf..svtgvDlspeaveiae.................kakkaqkdqfdeqeaaepqgkfdlIvlr 89 
                      + vLdiG+G+G l+  l+++ g   +v++v+l++ea + a+                  ++++q++q+         ++++lI+++
       CTQ29385.1  46 KHVLDIGAGSGLLALMLAQRtGDdvHVEAVELDEEAAAQARenalaspwasrievwqaDIHQWQPSQT---------RRYELIISN 122
                      68*********988888666454569*********999999******977766655555555555555.........799999986 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.41
  Methyltransf_23  96 pdppellrqiatllkpgGylllsep 120
                       d+++ll+++a+++ ++G + +  p
       CTQ29385.1 146 LDHASLLTCAAEHITEEGFFCVVLP 170
                      589999******9999999877765 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.3e-07   0.00011      39     128 ..      42     130 ..      34     162 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.3e-07
                    CHCC-EEEETT-TTSHHHHHHHHTT-SEEE..EEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH CS
  Cons_hypoth95  39 eiegarvLDlfaGsGalglEAlSRgakkav..lvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakell 128
                        ++vLD+ aGsG l+l  + R  + ++  +ve d+ea+++ +en  +    +++++ +  + ++++   +++++++++  +PP+ +e +
     CTQ29385.1  42 IAGVKHVLDIGAGSGLLALMLAQRTGDDVHveAVELDEEAAAQARENALASPWASRIEVWQA-DIHQWQP--SQTRRYELIISNPPFFAEGV 130
                    556689******************998766337**************999998876665555.5555533..467889*********98875 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   2.9e-07   0.00025      71     132 ..      42     104 ..      33     120 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.9e-07
                 --TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES- CS
        PCMT  71 lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgD 132
                 +  +++vL++G+GsG l+ +la+  g++ +v ++e  +e +++a++n  ++  + ++ v  +D
  CTQ29385.1  42 IAGVKHVLDIGAGSGLLALMLAQRTGDDVHVEAVELDEEAAAQARENALASPWAsRIEVWQAD 104
                 566789**************************************9985444332256555555 PP

>> PRMT5  PRMT5 arginine-N-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.2e-06    0.0011      68     143 ..      48     121 ..      40     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.2e-06
                 EEEES-TTSHHHHHHHHHHHHHCCCEEEEEEEES-HHHHHHHHHHHHHHTTCCGCEEEES-CCCCCHCC..-ECEEEE CS
       PRMT5  68 ilvvGaGRGplvdralkaleetkvtkvkivavEKnpnavvtLqkkvneekWeekveviksdmrelkaee..kvdllvs 143
                 +l +GaG G l   al  +++t+  +v++ avE  ++a  + +++   + W++++ev + d+++++ ++  +++l++s
  CTQ29385.1  48 VLDIGAGSGLL---ALMLAQRTG-DDVHVEAVELDEEAAAQARENALASPWASRIEVWQADIHQWQPSQtrRYELIIS 121
                 55589999877...466677787.89****************99999999***************9887668999998 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.7e-05     0.031       1      44 [.      49      93 ..      49     125 .. 0.77
   2 ?   -1.5   0.0       5.2   4.5e+03      21      37 ..     166     182 ..     150     192 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.7e-05
  Methyltransf_12  1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakre 44
                     L+iG+G+G l+ +l++++  d+++ +v+++++a ++a+e   +  
       CTQ29385.1 49 LDIGAGSGLLALMLAQRTgDDVHVEAVELDEEAAAQARENALASP 93
                     8****************99999999*********88887665544 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 5.2
  Methyltransf_12  21 ieytgvDispsaiedak 37 
                      + ++ vDi  ++ie+a+
       CTQ29385.1 166 CVVLPVDIGNAFIERAR 182
                      55667899999998776 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.9e-05     0.042      16      73 ..      46     104 ..      38     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.9e-05
  Methyltransf_18  16 srvaDiGtDHgylpiylvke.gkakkviasDinegplekakeniekagledkievrlsd 73 
                      ++v+DiG+  g+l+++l+++ g   +v a+++ e++ ++a+en+  +   ++iev  +d
       CTQ29385.1  46 KHVLDIGAGSGLLALMLAQRtGDDVHVEAVELDEEAAAQARENALASPWASRIEVWQAD 104
                      689***************8625567899****************999999999987766 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   9.2e-05     0.079       2      72 ..      50     118 ..      49     125 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.2e-05
  Methyltransf_24   2 EiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare....aglddrvrlikadseealaslaagsiDl 72 
                       iG+ sG  +l+l+   r  ++ ++ av+ d+   eaaa are    +  ++r+++++ad ++  +s   +++ l
       CTQ29385.1  50 DIGAGSGLLALMLA--QRTGDDVHVEAVELDE---EAAAQAREnalaSPWASRIEVWQADIHQWQPSQT-RRYEL 118
                      69955555555555..5666667888999999...666666665555888899*******999877766.55555 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013      0.11      64     122 ..      46     106 ..      41     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00013
                 -EEEEES-TTSHHHHHHHHHH..--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GG CS
        CMAS  64 mtlLdiGcGWGslvrravery..dvkvvglTlSkeqaklakkrvdeldlerkvevklldye 122
                 +++LdiG+G G l+   ++r   dv+v ++ l +e a++a+++  +   + + ev  +d +
  CTQ29385.1  46 KHVLDIGAGSGLLALMLAQRTgdDVHVEAVELDEEAAAQARENALASPWASRIEVWQADIH 106
                 589*********999999986448*****************99988888888877665544 PP

>> Methyltransf_10  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012       0.1     103     202 ..      45     140 ..      32     164 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
                      --EEEEES-TTTTHHHHHHHHHH-.-EEEEEES-HHHHHHHHHHHHHT.T-TTTEEEEE--TT-SCCHHSSTTSS-EEEEEE-S---SS----- CS
  Methyltransf_10 103 qvraldiGvGanCiyPllGvteyG.WrfvgsevddvslasakaivesnsklsdaiklrkqkekkaifdglieenerydvtlCnPPfhaslaeak 195
                       +++ldiG G+  +  +l +      +  + e+d+ + a+a+ +  +    ++ i++ +      i +    +  ry++ + nPPf+a+     
       CTQ29385.1  45 VKHVLDIGAGSGLLALMLAQRTGDdVHVEAVELDEEAAAQARENALAS-PWASRIEVWQA----DIHQWQPSQTRRYELIISNPPFFAEGVPCA 133
                      567899999988776666554433144557799999999999887776.57778888654....56666778899*************976554 PP

                      ------- CS
  Methyltransf_10 196 agserkl 202
                      ++++ + 
       CTQ29385.1 134 TSQREQA 140
                      4333332 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00021      0.18      22     110 ..      45     144 ..      11     183 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
                 T-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS...........HHH.TTEEEECS-CCCSSHHHHHC..HCHHHSSEEEEEE--S-SS-CHHHHH CS
        FtsJ  22 gktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...........apl.pgvttiqgditdpetiekik..ealserkvdlvvsDgapdvsgvhdld 106
                 +k+v+D+ga+ G  + +l+qr+g + +v av l +            +p  +++++ q+di + +  ++ +    +s+       + g+p+ + ++++ 
  CTQ29385.1  45 VKHVLDIGAGSGLLALMLAQRTGDDVHVEAVELDEEaaaqarenalaSPWaSRIEVWQADIHQWQPSQTRRyeLIISN---PPFFAEGVPCATSQREQA 140
                 478*******************999********777688887766644447899999****77666663330022221...223344555555555555 PP

                 HHHH CS
        FtsJ 107 eylq 110
                  y++
  CTQ29385.1 141 RYTT 144
                 5555 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00026      0.22      48      80 ..      46      79 ..      41     123 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
  Methyltransf_16 48 lsvlELGsGtGlvGlavaell.peakviltDlee 80
                     ++vl++G+G+Gl  l++a+ +  +++v    l+e
       CTQ29385.1 46 KHVLDIGAGSGLLALMLAQRTgDDVHVEAVELDE 79
                     79*****************954555554444443 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00033      0.28     103     167 ..      47     112 ..      42     166 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00033
                 EEEETT-TTTCCHHHCCH.HTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT CS
      Met_10 103 vVvdvfAGiGpfaipiak.yskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireq 167
                  V+d+ AG G +a+ +a+  ++++ v a++l+ e+    +en      ++++++ ++D ++  ++q
  CTQ29385.1  47 HVLDIGAGSGLLALMLAQrTGDDVHVEAVELDEEAAAQARENALASPWASRIEVWQADIHQWQPSQ 112
                 69***********9987526899*******************999999999999999999887643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1855.49
//
Query:       CTQ29386.1  [L=443]
Description: ATP-dependent RNA helicase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-47  160.3   0.1      2e-46  157.9   0.0    1.9  2  DEAD          DEAD/DEAH box helicase
    3.2e-32  111.2   0.0    3.6e-30  104.6   0.0    2.5  2  Helicase_C    Helicase conserved C-terminal domain
      9e-09   35.6   0.1    1.9e-08   34.5   0.0    1.6  2  ResIII        Type III restriction enzyme, res subunit
    8.8e-05   22.9   0.2    0.00033   21.0   0.2    2.0  1  AAA_19        AAA domain
  ------ inclusion threshold ------
      0.017   15.4   0.1      0.065   13.5   0.0    2.0  2  AAA_22        AAA domain
      0.053   12.9   0.0      0.053   12.9   0.0    2.6  2  CMS1          U3-containing 90S pre-ribosomal complex subunit
       0.11   12.6   0.2        1.9    8.5   0.0    2.4  2  Shikimate_DH  Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.9   0.0   7.9e-50     2e-46       1     175 [.      28     198 ..      28     199 .. 0.96
   2 ?   -0.3   0.0       0.3   7.8e+02      44     104 ..     245     305 ..     229     312 .. 0.69

  Alignments for each domain:
  == domain 1  score: 157.9 bits;  conditional E-value: 7.9e-50
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet..kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng 97 
                 t+iQa+aip +l+g+d+l++a+TG+GKT+a+l+p+lq++++   k++  p++li++PtreLa q++++++++ k+++l +  i+ggva+ +  ++++++
  CTQ29386.1  28 TAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFprKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSEN 126
                 79*************************************9889999999***********************************************999 PP

                 CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
        DEAD  98 vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdvkk 175
                  divv+t+grl++ +++++++++ v++l+lDEadr+ld+gf ++i++i+ +++         +q++++SATl+ + +k+
  CTQ29386.1 127 QDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETR-------WRKQTMLFSATLEgDAIKD 198
                 ****************************************************3.......3346********9777776 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.3
                 TSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.SEEEEEETTSSHHHHHHHHHTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
        DEAD  44 gktgpkalivePtreLaeqtlnnlkkfkkyid.lrvlliiggvaardqlskldng.vdivvgt 104
                 + ++++a++ +  re +++ +n l++ + ++  l+    + + ++++ +++l  g v+++++t
  CTQ29386.1 245 QPEATRAIVFVRKRERVHELANWLREAGINTCwLE--GEMVQAKRNEAIKRLTDGrVNVLIAT 305
                 56667888888888888888888888877533122..22335677777777765569999988 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.024        61       4      73 ..      64     133 ..      60     172 .. 0.79
   2 !  104.6   0.0   1.4e-33   3.6e-30       2     111 .]     235     343 ..     234     343 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.024
                 HHHHHHHHHTTTTSEEEEEESSHH...HHHH...HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C   4 eallellkleeeggkilifvntid...rlek...vklllekkgikvavlhgelpqnereeileqfnkgesdvLiat 73 
                 ++ll++  +++   +ili ++t++   +      ++ l ++ ++ +a+++g     +  e++++     +d+++at
  CTQ29386.1  64 QHLLDFPRKKSGPPRILILTPTRElamQ--VadhARELAKHTHLDIATITGGVAYMNHAEVFSEN----QDIVVAT 133
                 455555577888999*********7542..1446777767779********99999988888766....4566666 PP

  == domain 2  score: 104.6 bits;  conditional E-value: 1.4e-33
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 k + l++ll ++ e  ++++fv++++r+++ +++l ++ gi+++ l ge+ q +r+e++++  +g+++vLiatdva+rGidip+v++V+nfd+pr+ ++
  CTQ29386.1 235 KTKLLVNLL-QQPEATRAIVFVRKRERVHElANWL-REAGINTCWLEGEMVQAKRNEAIKRLTDGRVNVLIATDVAARGIDIPDVSHVFNFDMPRTADT 331
                 667889999.899999************8766777.5559*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y +riGRtgRag
  CTQ29386.1 332 YLHRIGRTGRAG 343
                 **********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   7.4e-12   1.9e-08      27     169 ..      44     191 ..      11     193 .. 0.80
   2 ?   -3.8   0.1       4.3   1.1e+04      86      92 ..     404     410 ..     377     425 .. 0.47

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 7.4e-12
                 EEEEESTTSTHHHHH.HHHHHHH-S.........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH. CS
      ResIII  27 glikmaTGtGKTlva.aklierllkkgkee....kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadse 119
                 +l  ++TGtGKT  + + + ++ll   +++    ++l+l p+++l  q  ++ +++++ ++ +i +++ g  +++  e +s+n +i+v+t+ +l + + 
  CTQ29386.1  44 ILGSAPTGTGKTAAYlLPALQHLLDFPRKKsgppRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNhAEVFSENQDIVVATTGRLLQYI- 141
                 556789*********5666666666655559********************************99999999988878899****************99. PP

                 .......HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---....SEEEEEESS- CS
      ResIII 120 eeeeeseellrdrfdviiiDEaHrlgakkswreilekfke....avllglTATp 169
                     ++e ++  + + +i DEa r+ ++ + + i     e    +  + ++AT+
  CTQ29386.1 142 ----KEENFDCRAVETLILDEADRMLDMGFAQDIETIAGEtrwrKQTMLFSATL 191
                 ....78888889999************976666633332223335555578886 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.3
                 EEEESSS CS
      ResIII  86 gkkvsgd 92 
                 +kk++++
  CTQ29386.1 404 QKKKDEK 410
                 1122222 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.2   1.3e-07   0.00033       1     119 [.      31     168 ..      31     256 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.3e-07
      AAA_19   1 qreave.alkekvllvtaGpGtGKTr.vlkhivallvelggvk..peeillvaftgrAakelrerlaalgae....atTiH.rlal........ldfdd 82 
                 q +a+  al  + +l  a+ GtGKT   l  ++++l++  + k  p +il++++t+  a+++++  ++l ++    + Ti  ++a           ++d
  CTQ29386.1  31 QAAAIPpALDGRDILGSAPTGTGKTAaYLLPALQHLLDFPRKKsgPPRILILTPTRELAMQVADHARELAKHthldIATITgGVAYmnhaevfsE-NQD 128
                 56677668888889999********7358889999988654441169*****************9987777777775555533333566666642.333 PP

      AAA_19  83 ll.tealelleeaeeekklqeee.llivDEfq.dvdelqy 119
                 ++  ++  ll++ +ee++  ++  +li DE+  ++d    
  CTQ29386.1 129 IVvATTGRLLQYIKEENFDCRAVeTLILDEADrMLDMGFA 168
                 3303333444555555544344458888887525555444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.5e-05     0.065      12     107 ..      48     166 ..      44     191 .. 0.74
   2 ?   -2.2   0.0       1.8   4.7e+03      52      70 ..     218     236 ..     180     265 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-05
      AAA_22  12 GesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst...sskdllrellralglelka...............erlsseell.ealeqalrarav 91 
                 +++GtGKT  +   + q+  +   ++ +p+ +++  p  +     +d +rel++ ++l+  +               e+++       +l q++++   
  CTQ29386.1  48 APTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRElamQVADHARELAKHTHLDIATitggvaymnhaevfsENQDIVVATtGRLLQYIKEENF 146
                 79********999999998777666666666655555555578999999999999999999999***999****9994444444444555555555555 PP

      AAA_22  92 ....ielliiDEaqh.lrsee 107
                     +e li+DEa++ l  + 
  CTQ29386.1 147 dcraVETLILDEADRmL-DMG 166
                 55558**********66.433 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.8
      AAA_22  52 sskdllrellralglelka 70 
                 ++k++ ++  ra + e+k+
  CTQ29386.1 218 ERKKIHQWYYRADDIEHKT 236
                 3444444444433333333 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.1e-05     0.053     121     209 ..      71     158 ..      49     171 .. 0.72
   2 ?   -3.3   6.0       1.8   4.5e+03      14      38 ..     403     427 ..     389     440 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.1e-05
        CMS1 121 aksngsPelLvltla...alRaaDlaralkklqtkdskvakLFakhikleesvtylkksrigiavGtpgRildLleeeslsvdeLkrivlDa 209
                  k +g P++L+lt +   a+ +aD ar l k       +a + +  +   ++  +  +++  i v t+gR+l+ ++ee + +  ++ ++lD 
  CTQ29386.1  71 RKKSGPPRILILTPTrelAMQVADHARELAKHT--HLDIATITGG-VAYMNHAEVFSENQ-DIVVATTGRLLQYIKEENFDCRAVETLILDE 158
                 356789999999977333566666666665544..4567777665.44555655555554.67788************************96 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.8
        CMS1  14 ekgkkkksekkRskkkerkkgklke 38 
                 ++ kk  +ek R kk++r+ +++ +
  CTQ29386.1 403 AQKKKDEKEKPRVKKRHRDTKNIGK 427
                 2223333355788888887777644 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.11   2.8e+02      63     119 ..     114     173 ..      74     182 .. 0.66
   2 ?    8.5   0.0   0.00074       1.9      25      68 ..     237     280 ..     234     330 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.11
                   EEEGCGHHHHHHT-SEEEE-SSSSS-SB-HHHHHCCHHH.S....E.EEEE--SS-SB-T CS
  Shikimate_DH  63 alkleelkellaeadvvisataseepilekeeveealkkrk..kpl.llvDiavPRdvep 119
                   +  ++  +   ++ d+v++ t+     +++e++     ++   ++   ++D++   d+e+
    CTQ29386.1 114 VAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLilDEAdRMLDMGFAQDIET 173
                   455666667778899999999999888888887643333333533347777777777775 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00074
                   HHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCG CS
  Shikimate_DH  25 elvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealklee 68 
                   +l+++ L + ++++ +v+ R +er++ela+ l+++ i+++ le 
    CTQ29386.1 237 KLLVNLLQQPEATRAIVFVRKRERVHELANWLREAGINTCWLEG 280
                   789999999***********************999888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3198.16
//
Query:       CTQ29387.1  [L=127]
Description: pyruvate formate lyase subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.4e-23   80.8   0.0    1.8e-22   79.9   0.0    1.5  2  Gly_radical  Glycine radical


Domain annotation for each model (and alignments):
>> Gly_radical  Glycine radical
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   9.8e-27   1.8e-22      20     106 .]      16     108 ..       6     108 .. 0.85
   2 ?   -2.6   0.1      0.45   8.1e+03      88      98 ..     112     122 ..     111     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 9.8e-27
                  CCCCCTSECGCETTEETTECC.CCHHHHHH.HCC-CCCCCCHHCCC....CCCT-SECEEEEETCCCHCCCCCSCGGGCCEEEESSSSEEECC CS
  Gly_radical  20 lnSvakldyevaldgislnlk.avpdalgk.eeeerienlatlldg....yfeggfhlnvnvvsretLldAqehpekypqltiRVsGYavnFv 106
                  lnS   ld e+ +++++++   +++d +   ++ ++ie+++ ++d      +egg+hlnvnv++retLldA+ehpekypqltiRVsGYav+F+
   CTQ29387.1  16 LNSFWLLDSEKGEARCLCAKGgFAEDDVVAvSKLGEIEYREIPVDVkpevRVEGGQHLNVNVLRRETLLDAVEHPEKYPQLTIRVSGYAVRFN 108
                  7888888899999999999888555555455**************95544446***************************************7 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.45
                  CGGGCCEEEES CS
  Gly_radical  88 pekypqltiRV 98 
                  pe++++++ R+
   CTQ29387.1 112 PEQQRDVIART 122
                  99999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1076.13
//
Query:       CTQ29388.1  [L=229]
Description: uracil-DNA-glycosylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-27   96.1   0.0    2.9e-27   95.6   0.0    1.2  1  UDG       Uracil DNA glycosylase superfamily


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.0   1.6e-31   2.9e-27       7     151 ..      55     209 ..      50     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 1.6e-31
                 T-SEEEEESSTCHH.HHHHSSSS.-STT.--HHHHHHH.CCCCCCCHHG...............CTEEEEESSS....SEC.GCTTCCCCTCCHH.HHH CS
         UDG   7 dakvvivGeaPgae.edatglpFsgrag.nllrkllne.aglkrdlese...............qgvyitnvvkcrppgnr.dtptsaeikacap.lle 85 
                 d+kvvi+G++P++  ++a+gl+Fs+r+g  ++++lln   +l+     +               qgv+++n+v+    + r ++ +s+    +++ +++
  CTQ29388.1  55 DVKVVILGQDPYHGpGQAHGLAFSVRPGvAIPPSLLNMyKELEATV--PgftrpthgyleswarQGVLLLNTVL----TVRaGQAHSHA-SLGWEtFTD 146
                 79**************************667778888877666633..2457888888****************....86668999999.9******** PP

                 HHHHHHH....SSEEEEESHHHHHH..HHHHSCESCCCSCT..SEEEEES-SSTTTTT..TTTSHHHHHHHHH CS
         UDG  86 eeiellk....prlivllGktaakallgeklgklrgklleak.irvlplphPsplnrn..ffksnpelkaeaw 151
                 + i+l++      +++l+G +a+k+          g++++++ ++vl+ phPspl+++  ff++n++  ++ w
  CTQ29388.1 147 KVIALINehceGVVFLLWGSHAQKK----------GAIIDRQrHCVLKAPHPSPLSAHrgFFGCNHFVQTNQW 209
                 **********6666***********..........******99****************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1959.15
//
Query:       CTQ29389.1  [L=361]
Description: putative methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-32  111.5   0.0    5.2e-32  111.0   0.0    1.3  1  SpoU_methylase  SpoU rRNA Methylase family
    4.3e-13   49.3   0.0    9.8e-13   48.2   0.0    1.6  1  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   0.0   5.8e-36   5.2e-32       3     141 ..     215     352 ..     213     353 .. 0.96

  Alignments for each domain:
  == domain 1  score: 111.0 bits;  conditional E-value: 5.8e-36
                     EEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST.T-SEGCCSHHHTT CS
  SpoU_methylase   3 ivvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl.kgkslseidlkek 96 
                     +++l+++ +p+NlGai+R+++ fg++++v+ +  ++ l +  a+r+a g +e++e  + ds+ ++l++++++g+a+v+ts+ +g++l +++l++k
      CTQ29389.1 215 VLALEDVGNPHNLGAIMRSCAHFGVKGVVVQD-AGV-LESGAAIRTAEGGAEYVEPITGDSFIDTLDQFRKAGYAIVSTSShNGTPLFKAELPKK 307
                     7899*********************9999965.777.99****************99***********************99************* PP

                     EEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHH CS
  SpoU_methylase  97 valvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvaill 141
                     ++l +G+E++Gls+ +++ ad  v I   g+veSLNv+vA+++ll
      CTQ29389.1 308 MVLALGQERDGLSDAAISSADLSVAIDGTGNVESLNVSVATGVLL 352
                     *******************************************97 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   1.1e-16   9.8e-13       2      72 ..     126     196 ..     125     199 .. 0.97

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 1.1e-16
  SpoU_sub_bind   2 iyGlhaVleaLksgrr.iekllvtegradkrleellklakkrgikvelvdkekLdklsgtanHQGvvaevkp 72 
                    +yG +a++++ +s+++ i++ ++ ++   +r++e l++ ++++  ++ vd+++L k sgt++H Gv+  +k+
     CTQ29389.1 126 VYGENACQALFQSRPEaIVRAWFIQS-VTPRFKEALRWMAANRKAYHVVDEAELAKASGTEHHGGVCFLIKK 196
                    8*************99**********.*****************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2735.52
//
Query:       CTQ29390.1  [L=141]
Description: thioredoxin 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-27   93.6   0.0    2.4e-26   91.7   0.0    1.8  2  Thioredoxin     Thioredoxin
    2.2e-10   40.9   0.6      2e-09   37.9   0.1    2.2  1  Thioredoxin_2   Thioredoxin-like domain
    3.9e-06   27.1   0.0     0.0003   21.1   0.0    2.2  2  Thioredoxin_8   Thioredoxin-like
    1.3e-05   25.3   0.1     0.0002   21.5   0.0    2.2  2  Thioredoxin_7   Thioredoxin-like
    9.1e-05   22.2   0.0    0.00011   22.0   0.0    1.1  1  Thioredoxin_9   Thioredoxin
    0.00016   21.1   0.0    0.00018   20.9   0.0    1.1  1  OST3_OST6       OST3 / OST6 family, transporter family
    0.00054   19.7   0.0     0.0014   18.4   0.0    1.6  2  Redoxin         Redoxin
    0.00082   19.3   0.2     0.0019   18.1   0.2    1.7  1  zinc_ribbon_4   zinc-ribbon domain
    0.00098   19.1   0.1     0.0063   16.5   0.0    2.1  2  Thioredoxin_3   Thioredoxin domain
     0.0021   17.9   0.0     0.0027   17.6   0.0    1.1  1  TraF            F plasmid transfer operon protein
     0.0025   17.7   0.0     0.0038   17.2   0.0    1.3  1  HyaE            Hydrogenase-1 expression protein HyaE
     0.0095   16.1   0.0       0.02   15.1   0.0    1.7  1  zinc_ribbon_13  Nucleic-acid-binding protein containing Zn-ri
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.012   15.5   0.0    1.2  1  AhpC-TSA        AhpC/TSA family
      0.076   12.9   0.0      0.089   12.7   0.0    1.3  1  Thioredoxin_6   Thioredoxin-like domain
       0.41   10.5   3.0       0.33   10.7   0.5    2.0  2  zinc_ribbon_5   zinc-ribbon domain


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.1   1.3e+03      28      37 ..       3      12 ..       1      17 [. 0.84
   2 !   91.7   0.0     2e-29   2.4e-26       3     102 ..      38     136 ..      36     137 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.1
                 TTSHHHHCHH CS
  Thioredoxin 28 pwCghCkala 37
                 + C++C+al+
   CTQ29390.1  3 TVCASCQALN 12
                 67*****986 PP

  == domain 2  score: 91.7 bits;  conditional E-value: 2e-29
                  EESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHH CS
  Thioredoxin   3 lvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaaf 100
                  ++ t ++ ++ +++ + +v+v+F+ApwCg+C+++aP +e++aee ++k++++kv+++++++l +++ +++iPt+++fkng+ ++ ++ga +k+ + ++
   CTQ29390.1  38 INATGATLDKLLKD-DLPVVVDFWAPWCGPCRSFAPIFEDVAEERSGKMRFVKVNTEAERELSARFRIRSIPTIMMFKNGEVIDMLNGAVPKAPFDSW 134
                  56677777777877.9***************************************************************************9999988 PP

                  HH CS
  Thioredoxin 101 lk 102
                  l+
   CTQ29390.1 135 LN 136
                  86 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   1.6e-12     2e-09       6     109 .]      53     135 ..      49     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1.6e-12
  Thioredoxin_2   6 kpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgkeivarlpGyv 100
                     pv+v+f++p+C+ C+ +   ++++            ++s +  +v++ +++e+           el+ ++++r+ Pti  f +g+ ++++l G+v
     CTQ29390.1  53 LPVVVDFWAPWCGPCRSFAPIFEDV---A-------EERSGKMRFVKVNTEAER-----------ELSARFRIRSIPTIMmFKNGE-VIDMLNGAV 126
                    69****************9977776...2.......234556667777777776...........6************77577787.********* PP

  Thioredoxin_2 101 paeeleall 109
                    p++ ++ +l
     CTQ29390.1 127 PKAPFDSWL 135
                    ***999887 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   2.5e-07    0.0003       4      45 ..      55      94 ..      52      97 .. 0.89
   2 !    8.0   0.0    0.0029       3.5      61      91 ..      85     115 ..      74     119 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.5e-07
                   EEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS CS
  Thioredoxin_8  4 vlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldk 45
                   v++ f+a wc pc+ f p   ++ e+ +   k+++v v+   
     CTQ29390.1 55 VVVDFWAPWCGPCRSFAPIFEDVAEERS--GKMRFVKVNTEA 94
                   89********************999998..899999998765 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0029
                    SEE.EE-TT-HHHHTT-S--TT-SEEEEE-T CS
  Thioredoxin_8  61 wlsvpfddkkrnklkkkynvkaiPtlvvldk 91 
                      +v ++ +   +l  ++++ +iPt++  ++
     CTQ29390.1  85 MRFVKVNTEAERELSARFRIRSIPTIMMFKN 115
                    45788999999**************887654 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.25     3e+02      29      37 ..       5      13 ..       2      19 .. 0.86
   2 !   21.5   0.0   1.7e-07    0.0002       8      82 ..      43     114 ..      36     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.25
                   -HHHHHHHH CS
  Thioredoxin_7 29 cftCqaler 37
                   c +Cqal+r
     CTQ29390.1  5 CASCQALNR 13
                   9******98 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.7e-07
                    HHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---SSEEEEE- CS
  Thioredoxin_7   8 ealakaaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanileldeqgvPvvafld 82 
                    + l+k+ ++  pv v+f a wc++C+ ++  f++     +  ++k+ +++v+ + + +   +++ + +P++++++
     CTQ29390.1  43 ATLDKLLKDDLPVVVDFWAPWCGPCRSFAPIFEDV--AEE-RSGKMRFVKVNTEAERELSARFRIRSIPTIMMFK 114
                    6788999**********************999877..444.77999999998755554334666789****9985 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   9.3e-08   0.00011      48     107 ..      59     116 ..      40     129 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 9.3e-08
                    E--TT-HHHHHHHHHHHHHHHH-.TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT CS
  Thioredoxin_9  48 ltedwCgDaavnvPvlakiaeln.pnievkillrdenlelmdqyltngaraiPtliildee 107
                    + ++wCg ++ + P+++ +ae+   ++ +  +  +++ el  +++    r+iPt+++++++
     CTQ29390.1  59 FWAPWCGPCRSFAPIFEDVAEERsGKMRFVKVNTEAERELSARFRI---RSIPTIMMFKNG 116
                    5689****************88714555555677888888888866...*****9998664 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.5e-07   0.00018      46     104 ..      64     115 ..      34     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.5e-07
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfpp 104
                 C +Cr f+p fe va+           k+ F+kv+ +  +++ ++++++s+P +++f+ 
  CTQ29390.1  64 CGPCRSFAPIFEDVAEERS-------GKMRFVKVNTEAERELSARFRIRSIPTIMMFKN 115
                 **************97644.......5699***************************97 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.1e-06    0.0014      28      74 ..      52      96 ..      38     113 .. 0.85
   2 ?   -0.4   0.0       0.7   8.4e+02     112     136 ..     101     127 ..      89     133 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.1e-06
                TSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSH CS
     Redoxin 28 gkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadnda 74
                + +vvv f++  +c++C+  +p +e++ae+ +++   +v v++  + 
  CTQ29390.1 52 DLPVVVDFWAP-WCGPCRSFAPIFEDVAEE-RSGKMRFVKVNTEAER 96
                4579*******.***************999.9999999999997765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.7
                 G..EEE-EEEEEEETTEEEEEEESSSC CS
     Redoxin 112 g..lrtpryavidedgkvvylevepep 136
                 +  +r+  +++  ++g v+ + +++ p
  CTQ29390.1 101 RfrIRSIPTIMMFKNGEVIDMLNGAVP 127
                 246788889999999999999888876 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.2   1.6e-06    0.0019       1      33 [.       1      30 [.       1      33 [. 0.93

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.6e-06
  zinc_ribbon_4  1 MkitCpsCkakyeiddeklpakgvkvrCskCgh 33
                   M+++C sC+a  +++d++ +++   ++C +Cgh
     CTQ29390.1  1 MNTVCASCQALNRLPDDRSADG---AKCGRCGH 30
                   99**************988887...9******9 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       0.9   1.1e+03       8      18 ..       3      13 ..       1      17 [. 0.79
   2 !   16.5   0.0   5.3e-06    0.0063       8      60 ..      62     119 ..      55     131 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.9
                   SSSTTCHHHHH CS
  Thioredoxin_3  8 pgCakCpklek 18
                   + Ca C++l++
     CTQ29390.1  3 TVCASCQALNR 13
                   66****98875 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 5.3e-06
                    SSSTTCHHHHHHHHHHCHCCTCECEEECC..TTHHHH.HHCT-SSSSEE..ECTTCEE CS
  Thioredoxin_3   8 pgCakCpklekavkeaaaekgikaevekv..tdfeei.ekygVmsvPal..vidgkvv 60 
                    p C  C+ ++ +++ +a+e+  k+ ++kv  +  +e+ ++++++s+P++  + +g+v 
     CTQ29390.1  62 PWCGPCRSFAPIFEDVAEERSGKMRFVKVntEAERELsARFRIRSIPTImmFKNGEVI 119
                    66******************99999999974566788***********9544578874 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.3e-06    0.0027     136     201 ..      59     115 ..      49     123 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.3e-06
        TraF 136 FyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdp 201
                 F ++ c+ c+ +api +++a++   ++r+V+v+ +  +el++         r+ ++++P++++++ 
  CTQ29390.1  59 FWAPWCGPCRSFAPIFEDVAEERSGKMRFVKVNTEAERELSA---------RFRIRSIPTIMMFKN 115
                 67788******************************9999998.........***********9986 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.2e-06    0.0038      64     101 ..      88     124 ..      73     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.2e-06
                 EEEETHHHHHHHHHCCT-TSSSEEEEEETTEEEEEEES CS
        HyaE  64 avvadreqeealaerfgvlktPsllflrdgeylgvlak 101
                 + v ++e e +l  rf+++  P+++++++ge++ +l++
  CTQ29390.1  88 VKV-NTEAERELSARFRIRSIPTIMMFKNGEVIDMLNG 124
                 333.589**************************99987 PP

>> zinc_ribbon_13  Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.6e-05      0.02       1      26 [.      24      49 ..      24      79 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-05
  zinc_ribbon_13  1 kCpKCgnteaevkevaatGsglskif 26
                    kC +Cg++ ++ + ++atG++l+k++
      CTQ29390.1 24 KCGRCGHDLFDGDVINATGATLDKLL 49
                    6***********************97 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0     1e-05     0.012      20      70 ..      45      95 ..      32     123 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1e-05
                CHHH.TT.SEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSC CS
    AhpC-TSA 20 lsdy.kg.kpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdsp 70
                l+++ k+  pvv+ f++  wc +C+  +p +++++ee    ++  + v+++ +
  CTQ29390.1 45 LDKLlKDdLPVVVDFWAP-WCGPCRSFAPIFEDVAEERS-GKMRFVKVNTEAE 95
                5555534479********.**************998865.4455666666555 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.4e-05     0.089     115     162 ..      72     115 ..      36     137 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.4e-05
                    HHHHHHHHHTTTT-EEEEEETTGGHHHHHHTT--GGG-SEEEEEESSS CS
  Thioredoxin_6 115 kaiekvakefkdkinfaladaksfkrpleylglsssdlPvivivdsas 162
                     ++e va+e ++k+ f+ +++++  ++  +++++  ++P+i +++  +
     CTQ29390.1  72 PIFEDVAEERSGKMRFVKVNTEAERELSARFRIR--SIPTIMMFK--N 115
                    4555566666666666666655333333355555..555555555..2 PP

>> zinc_ribbon_5  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   0.00028      0.33       1      33 [.       1      30 [.       1      34 [. 0.88
   2 ?   -1.2   0.1       1.4   1.7e+03      28      33 ..      64      69 ..      63      73 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00028
  zinc_ribbon_5  1 LiirCpdCdtkFklvdsklKksgkkVrCakCae 33
                   + + C  C+   +l d++   s    +C++C++
     CTQ29390.1  1 MNTVCASCQALNRLPDDR---SADGAKCGRCGH 30
                   6688**************...777889****98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.4
  zinc_ribbon_5 28 CakCae 33
                   C+ C++
     CTQ29390.1 64 CGPCRS 69
                   888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1081.55
//
Query:       CTQ29391.1  [L=232]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-40  137.3   0.0      6e-40  137.1   0.0    1.0  1  DTW       DTW domain


Domain annotation for each model (and alignments):
>> DTW  DTW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.0   3.4e-44     6e-40       3     196 ..      30     212 ..      28     214 .. 0.94

  Alignments for each domain:
  == domain 1  score: 137.1 bits;  conditional E-value: 3.4e-44
         DTW   3 lCerCllpaevclcsslppleklpikvlilqhpkEkkkstntarllalslanlrvvvgsdveeeaklsallkdpkrksvllFPsknaksledllaseaa 101
                 +C+rCllp ++clc+ l++ +    ++++++ + E  k++nt+rl+a+ l++++++ +s++e+ ++l +l+++p+++++++FP ++a + +++l+    
  CTQ29391.1  30 RCQRCLLPLKQCLCATLTSAQ-AASRFCLVMFDTEPMKPSNTGRLIADILPDTEAFQWSRTEPPQALLDLVAHPDYQPMVVFPASYAGPDRQVLSAP-- 125
                 8******************55.55***************************************************************9999888765.. PP

         DTW 102 kasekkeefeekrlillDGTWsqAkkilrrnprledlpqvkLkkgesseyerlRkqpkkgclSTiEaiayaLkeleeekealdnLldvfkamvek 196
                        +++++ +i+lDGTW++A+k++r++p+l+ lp ++ + ++ s y +lR+++++g+ +T+E+++ +L  ++ ++ a+++L + f  + ++
  CTQ29391.1 126 ---P---SGKPPLFIMLDGTWTEARKMFRKSPYLDALPIISVDLSRISAY-HLREAHADGQYCTAEVAIALLDLAG-DAPAAAALGEHFTRFRTR 212
                 ...2...589****************************************.******************9999999.688999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1846.99
//
Query:       CTQ29392.1  [L=883]
Description: fused acyl-CoA synthetase: NAD(P)-binding subunit; ATP-binding subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-76  256.1   0.4    2.3e-75  252.8   0.1    2.3  2  ATP-grasp_5      ATP-grasp domain
    5.4e-46  155.8   0.1    9.6e-46  155.0   0.1    1.4  1  Succ_CoA_lig     Succinyl-CoA ligase like flavodoxin domain
    1.4e-21   77.1   0.0      3e-20   72.8   0.0    2.9  2  CoA_binding_2    CoA binding domain
    3.6e-08   33.7   0.0    8.6e-08   32.4   0.0    1.7  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    4.5e-08   33.9   0.0    1.1e-07   32.6   0.0    1.7  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    0.00027   21.1   0.0       0.92    9.6   0.0    2.3  2  Acetyltransf_4   Acetyltransferase (GNAT) domain
    0.00095   19.1   0.0     0.0021   18.0   0.0    1.5  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0075   16.9   0.0      0.023   15.4   0.0    1.8  2  CoA_binding      CoA binding domain
  ------ inclusion threshold ------
      0.021   15.3   0.0       0.05   14.0   0.0    1.6  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      0.031   14.2   0.0       0.16   12.0   0.0    2.1  2  FR47             FR47-like protein
       0.15   12.3   0.1        3.4    8.0   0.0    3.0  3  OKR_DC_1_N       Orn/Lys/Arg decarboxylase, N-terminal domain


Domain annotation for each model (and alignments):
>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.8   0.1   1.4e-78   2.3e-75       1     220 [.     472     692 ..     472     694 .. 0.96
   2 ?    0.7   0.0      0.18     3e+02      55      85 ..     784     814 ..     763     819 .. 0.81

  Alignments for each domain:
  == domain 1  score: 252.8 bits;  conditional E-value: 1.4e-78
  ATP-grasp_5   1 kalaegrtlLteaeakelleaygipvvetrlassaeeaveaaeeigypvvlKivspdilhKtdvgGvrlnlkdaeevraaaeeilervkekspearie 98 
                  +a+++g t+L+++e+  +l+aygi++++t++a++++eav++ae+igypv+lK++spdi hK++v+Gv+l l++a+ev++aa+++++rvk + p+ari+
   CTQ29392.1 472 QAIDDGATTLDTHEVSPVLRAYGIHTLPTWIAADSAEAVHIAEQIGYPVALKLRSPDIPHKSEVQGVMLYLRTAAEVQQAADAMIDRVKLAWPQARIH 569
                  68999********************************************************************************************* PP

  ATP-grasp_5  99 gvlVqemakr.ggrElivgvteDpvFGpvilfGlGGtavevlkdvavalpplnstlareli.ertkaskllkgvrgekkadlaaleellvrlsqLvvd 194
                  g+lVq+ma+r g++El+v v++DpvFGp+i++G+GG+++ + +++avalppln++lar+l+ +++k +k+  +   + ++d+a l++llv++s+L+vd
   CTQ29392.1 570 GLLVQSMANRaGAQELRVVVEHDPVFGPLIMLGEGGVEWRAEDQAAVALPPLNMNLARYLViQAIKNKKIRGRSALR-PLDIAGLSQLLVQVSNLIVD 666
                  *******9999************************************************973777777776667777.******************** PP

  ATP-grasp_5 195 lpeIreldinPllveeegvvalDari 220
                  +peI++ldi+Pll+++++++alD+ +
   CTQ29392.1 667 CPEIQRLDIHPLLASGNEFTALDVTL 692
                  ***********************976 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.18
  ATP-grasp_5  55 spdilhKtdvgGvrlnlkdaeevraaaeeil 85 
                  +++   K+++ Gv   ++d++++ a+++ ++
   CTQ29392.1 784 VRTSAEKSEILGVTRAISDPDNIDAEFAVLV 814
                  467789*******************998876 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0   0.1   5.9e-49   9.6e-46       1     138 []     147     280 ..     147     280 .. 0.97

  Alignments for each domain:
  == domain 1  score: 155.0 bits;  conditional E-value: 5.9e-49
  Succ_CoA_lig   1 pGkialisqSGalalalldwaasrglgfskvvslGneadvdvadlleylaedpetkvillylEsirdgrkflsaarraarkkpvvvlksGrseagar 97 
                   +Gk+a+isqS a+  ++ldwa++r++gfs+++ lG+++d+dv dll++la+d++t++illylE+++d+r+f+saar+a+r+kp++v+ksGrs+a+++
    CTQ29392.1 147 RGKLAFISQSAAVSNTILDWAQQREMGFSYFIALGDSLDIDVDDLLDFLARDSKTSAILLYLEHLSDARRFVSAARSASRNKPILVIKSGRSPAAQK 243
                   699*******************************************************************************************999 PP

  Succ_CoA_lig  98 aaashtgalagsdavvdaafrqaGvlrvdsleelfdaaell 138
                     +    a +g d ++daa+++aG+lrv++++elf+a+e+l
    CTQ29392.1 244 LLH----ANSGMDPAWDAAIQRAGLLRVQDTHELFSAVETL 280
                   874....5589**************************9986 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   1.8e-23     3e-20       1     113 [.      13     129 ..      13     132 .. 0.96
   2 ?    0.4   0.1      0.55     9e+02      54     106 ..     533     588 ..     489     591 .. 0.65

  Alignments for each domain:
  == domain 1  score: 72.8 bits;  conditional E-value: 1.8e-23
                    --EEEET--S-TTSHHHHHHHHHHH...HT--EEEESSS-SEETTEES----T....T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT..--- CS
  CoA_binding_2   1 rtiaVvGasdnpgkfgykvlrylle...hglpvvpVnpkeeeilgekvyaslaedpepvdlvdvftppeatpeivkealalgakavwlqpg..sed 91 
                    ++iaV+Gas +p+++gy ++r+ll+   +g pv+pV+p  +++lg+ +++++++ p ++dl++++t++ + +e++++++++g+k+ ++ ++  ++ 
     CTQ29392.1  13 KSIAVIGASMKPQRAGYLMMRNLLAggfNG-PVMPVTPAWKAVLGVLAWPTIESLPFTPDLAVLCTNARRNLELLEALGQKGCKTCIILSSqpEQY 107
                    79***********************99999.**********************637*********************************9999999 PP

                    HHHHHHHHHTT-EEE.ES-HHH CS
  CoA_binding_2  92 eeaaelaeeagirvvgdrCilv 113
                    ++++e a+++++r++g++++++
     CTQ29392.1 108 PALLECAARYQMRLLGPNSLGL 129
                    *******************997 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.55
                    .T--EEEE-S-HHHHGGGHHHHHHH--SEEEE-TT...---HHHHHHHHHTT-EEE CS
  CoA_binding_2  54 epvdlvdvftppeatpeivkealalgakavwlqpg...sedeeaaelaeeagirvv 106
                    ++v+ v ++++ +a ++ + +a   ++k +w q+       + +a++a ++++rvv
     CTQ29392.1 533 SEVQGVMLYLRTAAEVQQAADAMIDRVKLAWPQARihgLLVQSMANRAGAQELRVV 588
                    45555555555444444444444446888888887444555555555555666655 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   5.3e-11   8.6e-08      16     117 .]     762     863 ..     747     863 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 5.3e-11
                     HHHHHHHH..HHHHHHSTTCEEEEEEET....TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EEEEET CS
  Acetyltransf_1  16 nedaseee..feesfsleaegllvaeed....geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vlavee 103
                     + +++++   + ++   + e  +va +      e++G  ++  +pd   +  +   + V+++  g GlG++Lle+l+ +  ++g++++  + + +
      CTQ29392.1 762 FTHDDLANmtQIDY---DREMAFVAVRTsaekSEILGVTRAISDPD---NIDAEFAVLVRSDLKGLGLGRRLLEKLIAYTQSHGLQRLnGI-TMP 849
                     33333333556666...66655552222243467************...888888********************************9444.889 PP

                     TEHHHHHHHHHTTE CS
  Acetyltransf_1 104 dndaairlYeklGF 117
                     +n+++i+l +klGF
      CTQ29392.1 850 NNRGMIGLARKLGF 863
                     9********88**9 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   6.7e-11   1.1e-07       1     138 []     725     864 ..     725     864 .. 0.74

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 6.7e-11
  Acetyltransf_3   1 RLlLrplteeDlealfelrs...dpe.vmrylpepltleeaeewlerawaeeseeegygwaivl..kdtgviGsvglrdleeedeeaelgymlap 89 
                     R l+rp+ +eD ++l+++ +    ++   ry+  ++  e +++ l+++ + ++++e    a+++  ++++++G+ +  + +++ + ae+  ++++
      CTQ29392.1 725 RCLFRPILPEDEPQLLAFIAqvtKEDlYYRYF--SEINEFTHDDLANMTQIDYDREMAFVAVRTsaEKSEILGVTRAISDPDNID-AEFAVLVRS 816
                     7799*******999988655011333333444..4455666777777655554444444555545433336****6665555544.********* PP

  Acetyltransf_3  90 sfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     +  g G+++  ++ l+ y  + +gl+rl   + ++N+++i +++klGf+
      CTQ29392.1 817 DLKGLGLGRRLLEKLIAYT-QSHGLQRLNGITMPNNRGMIGLARKLGFT 864
                     *******************.8888************************6 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00093       1.5     104     137 ..     488     521 ..     475     526 .. 0.90
   2 !    9.6   0.0   0.00056      0.92      77     136 ..     807     865 ..     786     873 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00093
  Acetyltransf_4 104 qvlkeqnienllaeiaspnensiqfhkalGFelv 137
                      vl++++i++l + ia++ ++++ +++++G+ ++
      CTQ29392.1 488 PVLRAYGIHTLPTWIAADSAEAVHIAEQIGYPVA 521
                     589****************************876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00056
  Acetyltransf_4  77 kaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFel 136
                      ae  v++ + d +  glgr l++ l+ + +  ++++l+  ++ +n   i ++ +lGF++
      CTQ29392.1 807 DAEFAVLV-RSDLKGLGLGRRLLEKLIAYTQSHGLQRLNGITMPNNRGMIGLARKLGFTV 865
                     57888899.5899999******************************************97 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.3e-06    0.0021      28     109 ..     776     866 ..     747     877 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.3e-06
  Acetyltransf_10  28 egealllvae...eggkivGviel.rdgshisl...lfVdpeyrgqGigkaLleaveeeaekdgikl..eltvnaspyavpfYeklGFkav 109
                      + e+ ++++    e+ +i+Gv +  +d + i     + V+++ +g G+g++Lle+++++ + +g++    +t+  ++  +++ +klGF++ 
       CTQ29392.1 776 DREMAFVAVRtsaEKSEILGVTRAiSDPDNIDAefaVLVRSDLKGLGLGRRLLEKLIAYTQSHGLQRlnGITMPNNRGMIGLARKLGFTVD 866
                      4444444443111558999***8879999766411158**********************9999998888888888899999999999764 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.4e-05     0.023       3      94 ..      12     101 ..      11     103 .. 0.94
   2 ?   -3.1   0.0       8.4   1.4e+04      71      84 ..     544     557 ..     529     563 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
                  TEEEEEETTTSHHHHHH.HHHHHHHHECEE.EEEEC-TTTTTCEETTEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEEEEES CS
  CoA_binding   3 dtkviviGagglgiagl.yhfkeklkygik.avfgvnprkvgtevlglpvyksvdeleektevdvavitvPaesaqeavdelveagikgiviit 94 
                  +++++viGa+ + +  + + +++ l  g++  v++v+p    + vlg+ + ++++ l+ +  +d av+++ a++  e  ++l ++g k+ +i +
   CTQ29392.1  12 PKSIAVIGASMKPQRAGyLMMRNLLAGGFNgPVMPVTPA--WKAVLGVLAWPTIESLPFT--PDLAVLCTNARRNLELLEALGQKGCKTCIILS 101
                  579*********99999899**********99*******..*******************..*************************9988865 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 8.4
                  -HHHHHHHHHHHHH CS
  CoA_binding  71 Paesaqeavdelve 84 
                   a+++q+a+d++++
   CTQ29392.1 544 TAAEVQQAADAMID 557
                  56777777777776 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.1e-05      0.05      12      75 ..     791     864 ..     776     865 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.1e-05
                     TEEEEEEEEEEES...TCTEE...EEE-GGGTTSSHHHHHHHH.TT....SEEEEE.EEEE.THHHHHHHHHHTTEE CS
  Acetyltransf_7  12 gkivGfialslld...aeitr...laVdpeyrgkGiGraLlea.ae....kgiile.qlel.naekaikfYeklGFe 75 
                      +i+G  ++  +    +       + V+ +  g G+Gr+Lle  ++    +g++     ++ n++  i++ +klGF+
      CTQ29392.1 791 SEILGVTRAISDPdniD---AefaVLVRSDLKGLGLGRRLLEKlIAytqsHGLQRLnGITMpNNRGMIGLARKLGFT 864
                     67778777666555433...344599***************953113334443311111222333556677888876 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.6   4.2e+03      56      79 ..     497     520 ..     483     523 .. 0.71
   2 ?   12.0   0.0   9.6e-05      0.16      25      80 ..     810     866 ..     805     870 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.6
                 -EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  56 tvllvvvasNtpsirlyeklGfek 79 
                 t+  +++a+  ++ ++ e++G+ +
  CTQ29392.1 497 TLPTWIAADSAEAVHIAEQIGYPV 520
                 344677788889999999999965 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 9.6e-05
                 EEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEE.EEETT-HHHHHHHHHHT-EEE CS
        FR47  25 galqvlpehrrrGlgsrlvkalakeiaergktvll.vvvasNtpsirlyeklGfeki 80 
                 +a+ v+ + ++ Glg+rl ++l++     g + l  ++ ++N   i l  klGf+++
  CTQ29392.1 810 FAVLVRSDLKGLGLGRRLLEKLIAYTQSHGLQRLNgITMPNNRGMIGLARKLGFTVD 866
                 699***********************99997776615567777789********976 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.66   1.1e+03      30      50 ..     150     170 ..     139     176 .. 0.87
   2 ?    8.0   0.0    0.0021       3.4      25      73 ..     187     237 ..     186     250 .. 0.90
   3 ?   -3.7   0.0       9.1   1.5e+04      71      91 ..     744     764 ..     741     772 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.66
  OKR_DC_1_N  30 lsvieqnsriaavvlsvddea 50 
                 l++i+q ++++  +l++++++
  CTQ29392.1 150 LAFISQSAAVSNTILDWAQQR 170
                 689**************9775 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0021
  OKR_DC_1_N  25 stdDllsvieqnsriaavvlsvd..deaaelldeirernedlPvFllaetr 73 
                 ++dDll ++  +s+ +a++l ++   +a+ +++++r    + P+ ++++ r
  CTQ29392.1 187 DVDDLLDFLARDSKTSAILLYLEhlSDARRFVSAARSASRNKPILVIKSGR 237
                 579**********************99999**************9998754 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 9.1
  OKR_DC_1_N  71 etrtsedvpadvlreidgfie 91 
                  + t+ed+   +++ei++f +
  CTQ29392.1 744 AQVTKEDLYYRYFSEINEFTH 764
                 445888888899999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.64u 0.22s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 6706.13
//
Query:       CTQ29393.1  [L=452]
Description: phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-29  102.8   0.0    4.4e-21   75.2   0.0    2.3  2  PLDc_2          PLD-like domain
    3.2e-13   49.3   1.5    3.8e-07   30.0   0.1    2.6  2  PLDc            Phospholipase D Active site motif
     0.0016   18.3   0.2     0.0056   16.5   0.2    2.0  1  Phage_tail_APC  Phage tail assembly chaperone protein


Domain annotation for each model (and alignments):
>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.7e-09     1e-05       2      98 ..      42     154 ..      41     158 .. 0.74
   2 !   75.2   0.0   7.4e-25   4.4e-21       2     120 ..     258     395 ..     257     409 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.7e-09
      PLDc_2   2 iqliksAkksidiatyyfvsdre...ildallk.aakrg.vkvrilldskkd.....dagavdeaslkelkellleagvevrvfe.t...ll..gslHa 84 
                 +++i++A+++i+i+  y++ d+    il+al++ +++r   +vr+l+d +++      a+a +     +++    + gv++ v+  +   ++  g lH 
  CTQ29393.1  42 LTRIAHATQRICIIALYLEQDDGgkgILQALYDaKRQRPeLDVRVLVDWHRAqrgriGAAASNTNADWYCRMANENPGVDIPVYGvPintREalGVLHF 140
                 6789**************444444448****9956666689*******9999999994444444444444444468899999987523432256***** PP

      PLDc_2  85 KlylidgktvivGS 98 
                 K+++id+++++ G 
  CTQ29393.1 141 KGFIIDDCVLYSGA 154
                 **********9884 PP

  == domain 2  score: 75.2 bits;  conditional E-value: 7.4e-25
      PLDc_2   2 iqliksAkksidiatyyfvsdreildallkaakrgvkvrilldskkd.dagavdeaslkelkellleagvevrvfe...t......ll.........gs 81 
                  +l+  A++++ i+t+yf+    ++++++++ + g++v+i++++k++ d+++++++ +k + +l++ +++++r f    +      +l         +s
  CTQ29393.1 258 FHLMPCAEHKLTICTPYFNLPAVLVRNIIQLLRDGKQVEIIVGDKTAnDFYIPEDQPFKIIGALPYLYEINLRRFLsrlQyyvntdQLivrlwkdddNS 356
                 678899************999999********************8888999************************9655155555511556677788** PP

      PLDc_2  82 lHaKlylidgktvivGSsNltkrgldlnlElnvviedke 120
                 +H K++++d++++++++ Nl++r+++l+lE+++ i+d++
  CTQ29393.1 357 YHLKGMWVDDEWMLLTGNNLNPRAWRLDLENAILIHDPK 395
                 *************************************95 PP

>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   4.4e-07    0.0026       3      28 .]     136     160 ..     134     160 .. 0.94
   2 !   30.0   0.1   6.3e-11   3.8e-07       2      28 .]     354     380 ..     353     380 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 4.4e-07
                 BEE---EEEETTTEEEEE---SSHHH CS
        PLDc   3 gthHqKivivDdrvafvGgaNLcdgr 28 
                 g++H K++i+Dd  ++++ga+L+d +
  CTQ29393.1 136 GVLHFKGFIIDDC-VLYSGASLNDVY 160
                 89***********.*********987 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 6.3e-11
                 TBEE---EEEETTTEEEEE---SSHHH CS
        PLDc   2 mgthHqKivivDdrvafvGgaNLcdgr 28 
                 ++++H K+++vDd++++++g+NL+ ++
  CTQ29393.1 354 DNSYHLKGMWVDDEWMLLTGNNLNPRA 380
                 789*********************986 PP

>> Phage_tail_APC  Phage tail assembly chaperone protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   9.4e-07    0.0056      19      42 ..     202     225 ..     183     229 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.4e-07
                     HSTTS---HHHHHHHHHHHHHHHH CS
  Phage_tail_APC  19 qlpDspldeeerqalkaYrqaLRD 42 
                       pD+p++ e + ++++Yrq+LRD
      CTQ29393.1 202 DRPDRPRSPEIKNDIRQYRQELRD 225
                     559********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3464.19
//
Query:       CTQ29394.1  [L=107]
Description: hypothetical protein CH1034_270105 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-09   39.0   0.6    1.3e-09   38.7   0.6    1.1  1  DUF2279   Predicted periplasmic lipoprotein (DUF2279)


Domain annotation for each model (and alignments):
>> DUF2279  Predicted periplasmic lipoprotein (DUF2279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.6   7.3e-14   1.3e-09      12      87 ..      24      99 ..      17     103 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 7.3e-14
     DUF2279 12 gGaDklgHlyssYllaellsalierkgleksnaalaasllslalmlymElgDsfkessGFsyeDvianlsGaalal 87
                 G Dk  H+  s +l+ + +   +++g+ + ++a  +++ s++l    El+Ds   +sG+s++D + +++Ga++++
  CTQ29394.1 24 SGQDKAQHFLASAMLSAAGNEYAQHQGYSRDRSAAIGLMFSVSLGASKELWDSRPAGSGWSWKDFAWDVAGATTGY 99
                69***********************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 817.66
//
Query:       CTQ29395.1  [L=432]
Description: alpha-ketoglutarate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-35  123.3  35.3    2.4e-25   89.3   9.9    2.0  2  Sugar_tr    Sugar (and other) transporter
    6.9e-24   84.4  46.4      1e-15   57.6  17.8    2.1  2  MFS_1       Major Facilitator Superfamily
    2.2e-07   29.8  35.4     0.0042   15.7  19.3    4.4  3  MFS_2       MFS/sugar transport protein
    3.4e-06   26.2  14.2    0.00087   18.2   6.3    3.8  3  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
      0.047   13.9   0.4      0.047   13.9   0.4    4.6  5  AzlD        Branched-chain amino acid transport protein (AzlD


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   9.9   6.7e-29   2.4e-25       3     194 ..      24     221 ..      22     223 .. 0.89
   2 !   43.0  15.8   7.4e-15   2.6e-11     226     433 ..     224     420 ..     214     432 .] 0.69

  Alignments for each domain:
  == domain 1  score: 89.3 bits;  conditional E-value: 6.7e-29
                 HHHHHHH.HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT. CS
    Sugar_tr   3 lvaalgg.llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk. 99 
                 +v a +g l++++d++v+++ +   + + +f   +++++     +++  ++++ ++ + iG+ ++g ++dr GRk s+li++ +++ g++++a+ +g+ 
  CTQ29395.1  24 IVGASSGnLVEWFDFYVYSFCSLYFA-HIFFPSGNTTTQL----LQTAGVFAAGFLMRPIGGWLFGRIADRRGRKTSMLISVCMMCFGSLVIACLPGYa 117
                 55555555**********99887777.5555555555434....468999999999****************************************99* PP

                 ....SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.....TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 100 ....nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn.....adgwrillglqlvpallllilll 189
                     ++  +l+++R++ G++vG++++++ +y+sE+A + + g+  s++ + ++ G+l+a  + ++l+++ +     a+gwri+++l +v+a++ l l+ 
  CTQ29395.1 118 vigtWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGKKGFYASFQYVTLIGGQLLAVLVVVALQQVLSdedlhAWGWRIPFALGAVLAIVALWLRR 216
                 ******************************************************************7777779******************99998888 PP

                 GS--- CS
    Sugar_tr 190 flPES 194
                  l+E+
  CTQ29395.1 217 QLDET 221
                 88876 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 7.4e-15
                 HHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHH CS
    Sugar_tr 226 eekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvtiivgvvnfvatfvaiflvdrfGRRtlll 321
                 +e ++l++       s k l+++   r+++ ++++  ++  lt + + +y+  ++ +++g++ s   +++t+ + v   v+ +++  ++d++GRR + +
  CTQ29395.1 224 QETRALKE-----AGSFKGLWRN---RRAFAMVLGFTAAGSLTFYTFTTYMQKYLVNTAGMTAStasVIMTAALFVYMLVQPLFG-AFSDKVGRR-TSM 312
                 22222222.....3556666666...88************************************665566666666666666666.89*******.667 PP

                 HHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHH.HHHHHHHHHHHHHHHHCHHHT-HHH CS
    Sugar_tr 322 lGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavav.nwlanflisllfpiiteaigggyvf 419
                 l++ + a +f++     +l++ +s  a+++++++ +l + +++    ++  +l +E+fp +vR+++  +++av n l+     ++   + +a  +  ++
  CTQ29395.1 313 LCFGVLATLFTVPI-LSALQKVSSPYAAFGLVICALLIVSFYT----SISGILKAEMFPAQVRALGVGLSYAVaNALFGGSAEYVALSLKSAGIEHAFY 406
                 77777777777773.4555555556788888877777777777....5556669***************987526677777777777666655545556 PP

                 HHHHHHHHHHHHHH CS
    Sugar_tr 420 lvfaglavlfiifv 433
                 ++ +++a++++++ 
  CTQ29395.1 407 WYVTVMAAIAFLVS 420
                 66666655555544 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6  17.8   2.8e-19     1e-15      30     236 ..      61     268 ..      30     277 .. 0.74
   2 !   34.9  23.3   2.1e-12   7.6e-09      13     167 ..     260     419 ..     258     429 .. 0.74

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 2.8e-19
       MFS_1  30 spseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.f...a.sslw.l..llvlrvlqGlgagalfpagaaliadwfpkeerg 120
                 +  +   ++++ +l   ++  ++Gr++dr Gr+  +l+++ ++++g+l+++ +   a ++ w +  ll++r++qGl  g+ + ++a+++++++ + ++g
  CTQ29395.1  61 QLLQTAGVFAAGFLMRPIGGWLFGRIADRRGRKTSMLISVCMMCFGSLVIAcLpgyAvIGTWaPalLLLARLFQGLSVGGEYGTSATYMSEVAVEGKKG 159
                 33333336666666667777778888********************66666553333644443355********************************* PP

       MFS_1 121 raigllsagfslGailgpllggllasslg........Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwi 211
                 ++ ++ +++   G +l+ l+  +l + l+        Wr +f + a+++++a     l+l++   e ++++++ +      +++ + +k l++++    
  CTQ29395.1 160 FYASFQYVTLIGGQLLAVLVVVALQQVLSdedlhawgWRIPFALGAVLAIVA-----LWLRRQLDETSKQETRAL------KEAGS-FKGLWRNRR--- 243
                 *****************99999999888899999999***************.....666666666666666555......56777.888888884... PP

       MFS_1 212 llialllfffgfsglltllplylqe 236
                 +++++l+f+++ s++++++++y+q+
  CTQ29395.1 244 AFAMVLGFTAAGSLTFYTFTTYMQK 268
                 4444444444444444444444443 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 2.1e-12
       MFS_1  13 silgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfa...sslwlllvlrvlqGlga.galfpag 106
                 +++++ +  +l ++ g+++s+++ ++t+  +++++ ++++G++sd++Grr  +l++g+l++++++ +l+ a    s+++ +++ v+++l   +++++++
  CTQ29395.1 260 YTFTTYMQKYLVNTAGMTASTASVIMTAALFVYMLVQPLFGAFSDKVGRRTsMLCFGVLATLFTVPILS-AlqkVSSPYAAFGLVICALLIvSFYTSIS 357
                 45566665599999*************************************999999999999955555.34577778888888888888879999999 PP

       MFS_1 107 aaliadwfpkeergraigllsagfslGailgpllgg.lla.sslgWrav.fyilaivsllafvl 167
                 ++l a++fp + r++++gl +a +++   +g  +   +l+  s+g + + ++ +++++++af++
  CTQ29395.1 358 GILKAEMFPAQVRALGVGLSYAVANAL--FGGSAEYvALSlKSAGIEHAfYWYVTVMAAIAFLV 419
                 9999*************9999976653..33333331222245554444245555555555442 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   4.8   7.3e-05      0.26     234     330 ..      32     140 ..      22     158 .. 0.78
   2 !    9.3   0.2    0.0001      0.38     141     234 ..     167     252 ..     158     259 .. 0.66
   3 !   15.7  19.3   1.2e-06    0.0042      11     120 ..     257     354 ..     248     424 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 7.3e-05
       MFS_2 234 llaalalgvlnglllYyltyvlg.ngsaasvfllvv.tisal....lgiplwqplakrlgkkntyllgalltivllvlvlll......qpsnlllflvl 320
                 l++++ ++v+   +lY++  +    ++  +++ ++  +++++    +g  l+ ++a r g+k+++l++ +++ ++++++  l      +++  +l+l++
  CTQ29395.1  32 LVEWFDFYVYSFCSLYFAHIFFPsGNTTTQLLQTAGvFAAGFlmrpIGGWLFGRIADRRGRKTSMLISVCMMCFGSLVIACLpgyaviGTWAPALLLLA 130
                 78899999999999***9999986666666666665588888555566667777888889******************999999997777777777777 PP

       MFS_2 321 lviagfgvgv 330
                  +  g++vg+
  CTQ29395.1 131 RLFQGLSVGG 140
                 7777777766 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0001
       MFS_2 141 flsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervemrkkekteqkeklslleqlkevfrnraflillllfl 234
                 +  ++g +la +++++l ++l+   + + g++i  +++a+L++++ ++     ++     ++ +++++++l+  + +k + rnr + +++l+f 
  CTQ29395.1 167 VTLIGGQLLAVLVVVALQQVLSDEDLHAWGWRIPFALGAVLAIVALWLR----RQL----DETSKQETRALKEAGSFKGLWRNRRAFAMVLGFT 252
                 333334444444444444555558889999************9999997....222....3345567777777778888888877777777665 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 1.2e-06
       MFS_2  11 ilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfiwllvtyillri 109
                 ++ ++++ty++ ++++++g++a+ +++++ +a +v  ++ p++G+++dk+    Grr++ +l  +++++++++ + ++++   s+++++ lv+  l   
  CTQ29395.1 257 LTFYTFTTYMQKYLVNTAGMTASTASVIMTAALFVYMLVQPLFGAFSDKV----GRRTS-MLCFGVLATLFTVPILSALQKVSSPYAAFGLVICAL--- 347
                 56678999****************************************75....99995.666667777677777777775555555554444333... PP

       MFS_2 110 lytlfeipyvs 120
                     + +++++
  CTQ29395.1 348 ----LIVSFYT 354
                 ....3333333 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1     0.032   1.1e+02      41      74 ..      70     104 ..      35     114 .. 0.65
   2 !    9.6   0.3    0.0001      0.36     291     352 ..     101     163 ..      81     172 .. 0.83
   3 !   18.2   6.3   2.4e-07   0.00087      17      83 ..     261     328 ..     251     420 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.032
  MFS_1_like  41 lilpltsilsppiwgvlaDrfgkrkk.vvilslll 74 
                 ++  l++ ++  ++g +aDr g+++  ++++++++
  CTQ29395.1  70 AAGFLMRPIGGWLFGRIADRRGRKTSmLISVCMMC 104
                 44555666666778889999887776334444443 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0001
  MFS_1_like 291 klliiallayilrfllyaii..enawlvlpievLhgisfgllwaaaveyvskiapksleatgqg 352
                 ++++++ +++i+ + +ya+i    + l+l++ +++g+s+g  +++ ++y+s++a ++ ++++ +
  CTQ29395.1 101 CMMCFG-SLVIACLPGYAVIgtWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGKKGFYAS 163
                 333333.345777999***99999******************************9999998865 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 2.4e-07
  MFS_1_like  17 sllPYltiylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsll 83 
                 ++  Y+++yl    g++as   +i++++ ++ +l +p++g+ +D++g+r+ ++ +++l+ + ++ +l 
  CTQ29395.1 261 TFTTYMQKYLVnTAGMTASTASVIMTAALFVYMLVQPLFGAFSDKVGRRTSMLCFGVLATLFTVPILS 328
                 5677*****97478****************************************99987766655444 PP

>> AzlD  Branched-chain amino acid transport protein (AzlD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.0      0.12   4.2e+02       3      52 ..      63     113 ..      61     136 .. 0.73
   2 ?   13.9   0.4   1.3e-05     0.047      41      84 ..     175     218 ..     163     219 .. 0.92
   3 ?   -0.3   0.6      0.34   1.2e+03      47      86 ..     257     291 ..     233     302 .. 0.48
   4 ?   -1.1   3.0       0.6   2.2e+03      29      76 ..     303     350 ..     280     365 .. 0.61
   5 ?   -1.7   1.9      0.95   3.4e+03      59      62 ..     403     406 ..     342     430 .. 0.50

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.12
        AzlD   3 laillmalvtyltRylplllfrr.lklppwlqrllryvPiavLaaliapel 52 
                 l +++++++ +l+R ++ +lf+r  +   +  ++l +v +  ++ l++ +l
  CTQ29395.1  63 LQTAGVFAAGFLMRPIGGWLFGRiADRRGRKTSMLISVCMMCFGSLVIACL 113
                 5678999999***********995555555556666666666666666655 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.3e-05
        AzlD  41 iavLaaliapellaetgklsaslglarllaalvavlvalltrnl 84 
                 +avL+++ ++++l++++ ++  + ++  l+a++a+++ +l+r+l
  CTQ29395.1 175 LAVLVVVALQQVLSDEDLHAWGWRIPFALGAVLAIVALWLRRQL 218
                 49******************99*******************985 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.34
        AzlD  47 liapellaetgklsaslglarllaalvavlvalltrnlll 86 
                 l+++++ +  +k     +l + +++++ ++  ++t  l++
  CTQ29395.1 257 LTFYTFTTYMQK-----YLVNTAGMTASTASVIMTAALFV 291
                 444444433333.....33333333333333333333333 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.6
        AzlD  29 ppwlqrllryvPiavLaaliapellaetgklsaslglarllaalvavl 76 
                 ++++ r  +++   vLa l++  +l+  +k s ++    l+ +++ ++
  CTQ29395.1 303 SDKVGRRTSMLCFGVLATLFTVPILSALQKVSSPYAAFGLVICALLIV 350
                 566666677777778887776666545444443333333333333333 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 0.95
        AzlD  59 lsas 62 
                 +++ 
  CTQ29395.1 403 HAFY 406
                 2333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 2859.23
//
Query:       CTQ29396.1  [L=857]
Description: protein disaggregation chaperone [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-58  195.4   0.0    2.4e-55  187.3   0.0    2.8  2  AAA_2            AAA domain (Cdc48 subfamily)
    1.5e-35  121.2   4.6    1.5e-35  121.2   4.6    3.3  3  AAA_lid_9        AAA lid domain
    2.2e-28   98.1   0.2    2.2e-28   98.1   0.2    2.6  2  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    1.7e-27   95.3   2.1    7.5e-14   51.6   0.2    3.5  3  Clp_N            Clp amino terminal domain, pathogenicity isl
    1.6e-26   93.3   0.0    1.6e-13   51.2   0.0    2.8  2  AAA              ATPase family associated with various cellul
      1e-18   67.6   0.0      5e-13   49.2   0.0    3.2  2  AAA_5            AAA domain (dynein-related subfamily)
    3.1e-12   47.2   7.9    3.9e-05   24.1   0.1    5.5  5  AAA_16           AAA ATPase domain
    2.9e-09   36.9   0.0    3.6e-06   26.8   0.0    3.1  2  Sigma54_activat  Sigma-54 interaction domain
    3.6e-08   33.8   6.0      0.013   15.7   0.2    5.0  3  AAA_22           AAA domain
    1.3e-06   28.0   0.1      0.012   15.1   0.0    4.0  3  TniB             Bacterial TniB protein
    1.7e-06   28.6   0.4       0.41   11.2   0.0    4.6  4  AAA_18           AAA domain
      2e-06   27.6   0.1       0.48   10.2   0.0    4.7  5  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.3e-05   25.1   0.1      0.045   13.5   0.0    3.0  2  IstB_IS21        IstB-like ATP binding protein
    5.5e-05   23.2   0.0       0.61   10.1   0.0    3.6  3  AAA_14           AAA domain
    5.9e-05   23.1   0.9        2.2    8.1   0.1    4.3  3  ATPase_2         ATPase domain predominantly from Archaea
    6.3e-05   22.8   0.0      0.038   13.7   0.0    2.7  2  AAA_24           AAA domain
    7.8e-05   22.3   0.0        0.2   11.2   0.0    2.7  2  AAA_7            P-loop containing dynein motor region
     0.0002   21.5   0.0       0.71   10.1   0.0    2.5  2  Roc              Ras of Complex, Roc, domain of DAPkinase
     0.0003   21.1   0.0        1.1    9.6   0.0    3.1  2  RNA_helicase     RNA helicase
    0.00057   19.9   0.0        1.7    8.7   0.0    3.3  3  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00069   19.6   0.0        1.5    8.7   0.0    2.8  2  RsgA_GTPase      RsgA GTPase
     0.0012   18.3   0.2          3    7.2   0.0    3.5  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0017   18.3   0.0       0.16   11.9   0.0    2.6  2  NACHT            NACHT domain
     0.0021   17.9   0.1        1.5    8.7   0.0    3.2  2  AAA_3            ATPase family associated with various cellul
     0.0023   17.1   0.3       0.54    9.4   0.0    3.2  3  DUF815           Protein of unknown function (DUF815)
     0.0024   18.1   2.1        1.5    9.0   0.3    4.1  3  AAA_28           AAA domain
     0.0079   16.7   2.4        3.1    8.3   0.0    3.7  3  ABC_tran         ABC transporter
  ------ inclusion threshold ------
      0.012   15.6   0.0        9.7    6.2   0.0    3.4  3  ResIII           Type III restriction enzyme, res subunit
      0.013   15.1   0.0       0.51    9.9   0.0    3.0  2  AAA_25           AAA domain
      0.013   14.8   0.0        2.3    7.4   0.0    2.9  2  Zeta_toxin       Zeta toxin
      0.015   15.7   0.1       0.84   10.0   0.1    3.2  3  AAA_19           AAA domain
      0.024   14.4   0.3        1.3    8.8   0.0    3.0  2  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.025   14.5   0.0        4.9    7.0   0.0    2.9  2  NTPase_1         NTPase
      0.033   14.4   0.0         18    5.5   0.0    3.1  2  AAA_33           AAA domain
      0.045   13.5   0.0         11    5.7   0.0    2.7  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
      0.054   13.2   0.0         11    5.9   0.0    2.6  2  AAA_29           P-loop containing region of AAA domain
      0.062   12.9   0.0        2.2    7.9   0.0    2.5  2  SRP54            SRP54-type protein, GTPase domain
        0.1   12.3   0.0        1.9    8.2   0.0    2.5  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.21   11.7   0.0       0.59   10.2   0.0    1.7  1  Torsin           Torsin


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.051        23       6      77 ..     202     280 ..     197     292 .. 0.79
   2 !  187.3   0.0   5.2e-58   2.4e-55       1     171 []     596     760 ..     596     760 .. 0.98

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.051
                 EEEE--TTSSHHHHHHHHHHHTT-..........-EEEEEGGG-------THHH.HHHHHHTTT-HHHHTTSEEEEETG CS
       AAA_2   6 illlgptgvGktelakalaellfv......kkekkliradaselleeeevehlv.srligappgyvgaeegGivllDEi 77 
                   l+g+ gvGkt + + la+ +         k +++  +d+ +l  + + +    +rl+g  +   ++e + i+++DE+
  CTQ29396.1 202 PVLIGEPGVGKTAIVEGLAQRIVNgevpegLKGRRVLALDMGALVAGAKYRGEFeERLKGVLTDLSKQEGNVILFIDEL 280
                 5689999******9999999885588999888899999*****999666655441567777777777777779999997 PP

  == domain 2  score: 187.3 bits;  conditional E-value: 5.2e-58
                 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG-------- CS
       AAA_2   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessg 87 
                 rpi+s+l+lgptgvGktel k+la+++f +++++++r+d+se++e    +h+vsrl+gappgyvg+eegG            ++llDE++K+hp     
  CTQ29396.1 596 RPIGSFLFLGPTGVGKTELCKTLANFMF-DSDDAMVRIDMSEFME----KHSVSRLVGAPPGYVGYEEGGylteavrrrpysVILLDEVEKAHP----- 684
                 699*************************.****************....*********************************************..... PP

                 -----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2  88 advSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpei 171
                       +V+++LLq+l++g+ltd qgr+vd++n+++Imt+++gs+ i++  r +e ++ ++k+ v   +++ ++pE+++R++e+
  CTQ29396.1 685 ------DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQE--RFGELDYGHMKDLVLGVVSQNFRPEFINRIDEV 760
                 ......*******************************************..6668**************************985 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   4.6   3.3e-38   1.5e-35       1     101 [.     342     442 ..     342     447 .. 0.97
   2 ?   -1.8   0.1       6.6     3e+03      75      89 ..     466     480 ..     442     502 .. 0.44
   3 ?    0.4   0.0       1.3   6.1e+02      13      33 ..     561     581 ..     558     587 .. 0.81

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 3.3e-38
   AAA_lid_9   1 seeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeeekekaer 99 
                 s+e+ti+iLrglke+ye hH+v+i+d a++aa++lS+rYi dr+lPdkAIDl+Deaa+++r++ +skpeel++l++++ +l+ e++al+ke+++++ +r
  CTQ29396.1 342 SVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALKKESDEASLKR 440
                 689*******************************************************************************************99999 PP

   AAA_lid_9 100 lk 101
                 l+
  CTQ29396.1 441 LD 442
                 86 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 6.6
   AAA_lid_9  75 ekelaklekekeale 89 
                 ++ l+ +++ k++le
  CTQ29396.1 466 KASLSGTQTIKAELE 480
                 222222222222222 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.3
   AAA_lid_9  13 kekyekhHgvkisdealeaav 33 
                 + + e hH+v  +dea+ea+ 
  CTQ29396.1 561 RMEQELHHRVIGQDEAVEAVS 581
                 556689***********9864 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.4       7.1   3.3e+03       8      27 ..     418     437 ..     412     454 .. 0.55
   2 !   98.1   0.2   4.7e-31   2.2e-28       1      80 [.     766     845 ..     766     846 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 7.1
                    HHHHHHHHHHHHHSCTTTEE CS
  ClpB_D2-small   8 kIvdlalkklekrlkergve 27 
                    +I++l+l++++ + ++++ +
     CTQ29396.1 418 RIIQLKLEQQALKKESDEAS 437
                    45555555555444444454 PP

  == domain 2  score: 98.1 bits;  conditional E-value: 4.7e-31
                    SCHHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSEEE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtvr 80 
                    L+++++ +I++++l++l+krl+erg+e++++deal+ l  +gydp+yGARpL+r+iq++ie+pla++ilsgel++g+t++
     CTQ29396.1 766 LGEKHIASIAQIQLQRLYKRLEERGYEVQMSDEALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKTIE 845
                    899**************************************************************************997 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.2   1.6e-16   7.5e-14       1      52 [.      17      68 ..      17      69 .. 0.98
   2 !   41.4   0.0   2.5e-13   1.2e-10       1      53 []      94     145 ..      94     145 .. 0.97
   3 ?   -2.1   0.0       9.9   4.6e+03      20      36 ..     513     529 ..     513     539 .. 0.85

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.6e-16
                HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHH CS
       Clp_N  1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekll 52
                Aq+lA+ +++q+i++ HL+ ALl++++G  ++lL  aGv+  +lr  ie++l
  CTQ29396.1 17 AQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGVNAGKLRTDIEQAL 68
                9*************************************************97 PP

  == domain 2  score: 41.4 bits;  conditional E-value: 2.5e-13
                 HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHHC CS
       Clp_N   1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekllg 53 
                 +++lA++ ++++is+E + lA le ++G++ +lLk aG++ + + +aie+++g
  CTQ29396.1  94 CDKLAQKKKDNFISSELFVLAALE-SRGTLTDLLKSAGATTANVTQAIEQMRG 145
                 689******************998.88************************97 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 9.9
                 HHHHHSCTSHHHHHHHH CS
       Clp_N  20 lALleeddGlaarlLkk 36 
                 lA + +++G   rlL++
  CTQ29396.1 513 LAAATQSEGKTMRLLRN 529
                 688999*******9986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.0   3.4e-16   1.6e-13       2     128 ..     203     337 ..     202     341 .. 0.83
   2 !   39.1   0.0     2e-12   9.1e-10       2     117 ..     602     727 ..     601     733 .. 0.86

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 3.4e-16
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 +l+G pG+GKT++++ +a+ +          g+++l +++  l+   ky ge e+++++++++++++++ +ilfiDE++ ++++    + + ++++ n 
  CTQ29396.1 203 VLIGEPGVGKTAIVEGLAQRIvngevpeglkGRRVLALDMGALVagAKYRGEFEERLKGVLTDLSKQEGNVILFIDELHTMVGAG---KADGAMDAGNM 298
                 599*****************77776676666699*********98778***************9888867***************...88999999999 PP

                 HHHHHHHTTTSSSTEEEEEEESS...GGGSTHHHHS.TTSSEEE CS
         AAA  89 Llteldgvkkkeskvivigatnr...pdkldpallr.gRfdrki 128
                 L ++l + +       ++gat+     + +++   + +Rf++++
  CTQ29396.1 299 LKPALARGEL-----HCVGATTLdeyRQYIEKDAALeRRFQKVF 337
                 9999998877.....57888887665444544444447887766 PP

  == domain 2  score: 39.1 bits;  conditional E-value: 2e-12
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeer 84 
                 l+ Gp G+GKT l+k +a+ +   +  +++i++se+++k            yvg  e    ++++ea + + p s++++DE+++ +++           
  CTQ29396.1 602 LFLGPTGVGKTELCKTLANFMfdsDDAMVRIDMSEFMEKhsvsrlvgappgYVGYEEG---GYLTEAVRRR-PySVILLDEVEKAHPDV---------- 686
                 899*****************8665688**********999****99999998887776...4566655555.77***********9999.......... PP

                 HHHHHHHHHHHTTTS........SSTEEEEEEESS.GGGSTH CS
         AAA  85 vvnqLlteldgvkkk........eskvivigatnr.pdkldp 117
                   n Ll++ld+ +           ++++vi+++n   d +++
  CTQ29396.1 687 -FNILLQVLDDGRLTdgqgrtvdFRNTVVIMTSNLgSDLIQE 727
                 .***********9999*******6669*******96666665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.3e-05      0.02       3      27 ..     203     228 ..     201     284 .. 0.76
   2 !   49.2   0.0   1.1e-15     5e-13       2     123 ..     601     721 ..     600     732 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.3e-05
                 EEE--SSSSHHHHHHHGGGGB.S--E CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nrev 27 
                 +L+G+pG+gK+ ++e la+++ n ev
  CTQ29396.1 203 VLIGEPGVGKTAIVEGLAQRIvNGEV 228
                 79******************986655 PP

  == domain 2  score: 49.2 bits;  conditional E-value: 1.1e-15
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--.........-.-------..G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreikngttslvds.plvraar..egeilvlDEveraesevlnsLlslleerrl 94 
                 +l +Gp+G+gK+el + la ++    + ++ + +++++++  +   +   +g   ++++  l++a+r    ++++lDEve+a+++v+n+Ll++l++ rl
  CTQ29396.1 601 FLFLGPTGVGKTELCKTLANFMfdsDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGgYLTEAVRrrPYSVILLDEVEKAHPDVFNILLQVLDDGRL 699
                 789*********************999999************999999777777777651567777788889*************************** PP

                 E..-SSSEEE---......-EEEEEESS- CS
       AAA_5  95 lleeggelvkaknddllerfrviatanpl 123
                   +  g+ v+++n      + vi+t+n  
  CTQ29396.1 700 T-DGQGRTVDFRN------TVVIMTSNLG 721
                 *.44444455555......8999999965 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2       3.1   1.4e+03      73     127 ..     113     165 ..      23     174 .. 0.56
   2 !   24.1   0.1   8.6e-08   3.9e-05       2      49 ..     180     224 ..     179     239 .. 0.85
   3 ?    4.9   0.0     0.066        31     118     146 ..     254     288 ..     235     308 .. 0.71
   4 !   17.2   0.0   1.1e-05    0.0052       2      47 ..     570     621 ..     569     647 .. 0.88
   5 ?   -0.6   0.0       3.3   1.5e+03     134     159 ..     668     694 ..     661     706 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 3.1
      AAA_16  73 aqalareellrqlldeaesaeleawrekleealaavpelagaeasrllellkrll 127
                 + al+ ++ l++ll  a ++ ++  ++   e+++ + ++ +++a++ +++lk++ 
  CTQ29396.1 113 LAALESRGTLTDLLKSAGATTANVTQA--IEQMRGGESVNDQGAEDQRQALKKFT 165
                 233333333444443333322222222..22222334444444477777777776 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 8.6e-08
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellrale 49 
                 ++GR+ee+++  ++l+r  ++ p   +l+Ge+GvGK+++v+ l++++ 
  CTQ29396.1 180 VIGRDEEIRRTIQVLQRRTKNNP---VLIGEPGVGKTAIVEGLAQRIV 224
                 78******888888887766655...899************9998875 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.066
      AAA_16 118 rllellkrllallsrderplvlvlDdlq......w 146
                  + e lk  l  ls++e  ++l++D+l+      +
  CTQ29396.1 254 EFEERLKGVLTDLSKQEGNVILFIDELHtmvgagK 288
                 4667788888445555777********95555552 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 1.1e-05
      AAA_16   2 lvGReeeleqLlsalervrsgrp......elvllsGesGvGKsslvrellra 47 
                 ++G +e +e++ +a++r r+g +      ++ l+ G+ GvGK+ l ++l++ 
  CTQ29396.1 570 VIGQDEAVEAVSNAIRRSRAGLSdpnrpiGSFLFLGPTGVGKTELCKTLANF 621
                 7899************999988788999******************999875 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 3.3
      AAA_16 134 erp.lvlvlDdlqwadeaslqllaaLl 159
                 +rp  v++lD++++a ++  ++l + l
  CTQ29396.1 668 RRPySVILLDEVEKAHPDVFNILLQVL 694
                 445589*********999988854444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.013         6       2      44 ..     181     221 ..     180     290 .. 0.79
   2 !   26.8   0.0   7.9e-09   3.6e-06      23     154 ..     599     729 ..     570     739 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.013
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraihe 44 
                      ig++e+++++++ +++ +k+  +vl  Ge G+GK+ + + + +
       CTQ29396.1 181 IGRDEEIRRTIQVLQRRTKN-NPVL-IGEPGVGKTAIVEGLAQ 221
                      78888888888888876543.4555.5********99887665 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 7.9e-09
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQekLl 114
                       s l +G +G+GK+ l +++ +    ++  +v+++++++ e+   s+L G   G + G e+      ++++   ++++LDe+++  +++ + Ll
       CTQ29396.1 599 GSFLFLGPTGVGKTELCKTLANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPG-YVGYEEGGYltEAVRRRPYSVILLDEVEKAHPDVFNILL 691
                      57899*********************************************9998.88877654333445555679******************* PP

                      HHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS CS
  Sigma54_activat 115 rvlqegevervGsskeikvdvriiaatnedleeaveegkf 154
                      +vl++g+++  G+ +++++   ++  t+ +l + + +++f
       CTQ29396.1 692 QVLDDGRLTD-GQGRTVDFRNTVVIMTS-NLGSDLIQERF 729
                      ******9886.77777777666776665.55555555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.2e-05     0.033       4      56 ..     198     251 ..     195     301 .. 0.67
   2 ?   -0.5   0.4         3   1.4e+03      37     112 ..     327     415 ..     313     431 .. 0.60
   3 !   15.7   0.2   2.9e-05     0.013       8     118 ..     601     696 ..     596     720 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.2e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdl 56 
                 t++  v++Ge+G+GKT  ++ l+++ ++ + +e  ++++v+  ++ ++   ++ 
  CTQ29396.1 198 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGlKGRRVLALDMGALVAGAKY 251
                 788889*****************9987766666565555555554444433333 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 3
      AAA_22  37 e...erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav......ielliiDEaqh.lr....s.eealeeL 112
                     +r + vfv  ps ++   +lr l + ++l ++   + ++  + a +  ++++ +      +++ +iDEa   +r    s +e l  L
  CTQ29396.1 327 AaleRRFQKVFVAEPSVEDTIAILRGLKERYELHHHV--QITDPAIVAAATLSHRYIAdrqlpdKAIDLIDEAASsIRmqidSkPEELDRL 415
                 1445677777888888888888888888888877766..3333333444444444433445577777788998887756544246666666 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 2.9e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrse 106
                  +  G++G+GKT l+++l++           ++  v++++++ ++  ++     r +g +  +      e   +l++a+r+r   +++++DE+++  ++
  CTQ29396.1 601 FLFLGPTGVGKTELCKTLANFMFD------SDDAMVRIDMSEFMEKHSV----SRLVGAPPGY---VGYEEGGYLTEAVRRRPY-SVILLDEVEKA-HP 684
                 6778****************9632......4888889999999966555....5666666666...556667889999999999.9********99.99 PP

      AAA_22 107 ealeeLrsllnl 118
                 ++++ L + l++
  CTQ29396.1 685 DVFNILLQVLDD 696
                 999999888886 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.6e-05     0.012      29     183 ..     193     337 ..     184     341 .. 0.74
   2 ?   -1.4   0.0       2.8   1.3e+03     127     148 ..     565     586 ..     548     592 .. 0.82
   3 ?    3.0   0.0      0.12        57      36      57 ..     599     620 ..     577     637 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-05
        TniB  29 ypkrkrmpnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrlyaaiLealgaplkararvskleqqvlrllrel.kvrvLiiD 126
                 + +r   +n +l+G++ +GKt+ive  a++             ++  ++p+  + +r  a  + al a +k r + ++  + vl+ l++  +  +L iD
  CTQ29396.1 193 VLQRRTKNNPVLIGEPGVGKTAIVEGLAQR-------------IVNGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLTDLSKQeGNVILFID 278
                 555555577778888888888888877655.............444555666666666666667777788888888877777776666551556789** PP

        TniB 127 Eihnll.agsarkqreflnalksLgnelkipivlvGt.eealralrtDpqlasRFepia 183
                 E+h ++ ag+a+    + n+lk    + ++  v++ t +e  + +++D+ l++RF+++ 
  CTQ29396.1 279 ELHTMVgAGKADGAMDAGNMLKPALARGELHCVGATTlDEYRQYIEKDAALERRFQKVF 337
                 ***997589999999*******9999999999999983456679***********9876 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.8
        TniB 127 Eihnllagsarkqreflnalks 148
                 E+h+ + g+ ++ +++ na+++
  CTQ29396.1 565 ELHHRVIGQDEAVEAVSNAIRR 586
                 9999999999999999999985 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.12
        TniB  36 pnlllvGdsnnGKtmivekFar 57 
                  + l++G++ +GKt +++  a+
  CTQ29396.1 599 GSFLFLGPTGVGKTELCKTLAN 620
                 6899************997665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0076       3.5       3      25 ..     204     231 ..     203     280 .. 0.77
   2 ?    1.6   0.0      0.82   3.8e+02       9      68 ..     470     531 ..     468     566 .. 0.85
   3 !   11.2   0.0    0.0009      0.41       3      21 ..     603     621 ..     602     652 .. 0.75
   4 ?    1.3   0.0         1   4.7e+02     104     116 ..     780     792 ..     740     801 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0076
      AAA_18   3 ltGtpGvGKttlakeLskrlgf.....g 25 
                 l G pGvGKt + + L++r  +     g
  CTQ29396.1 204 LIGEPGVGKTAIVEGLAQRIVNgevpeG 231
                 8899************999622355554 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.82
      AAA_18   9 vGKttlakeLskrl.gf..gvnlrdvakenglllevdpealdeskrldedkldklldaleens 68 
                 +G  t+  eL++   ++   ++++d+a+ ++l ++  pe l++++ + ++   k +++l++  
  CTQ29396.1 470 SGTQTIKAELEQAKiAIeqARRVGDLARMSELQYGKIPE-LEKQLAAATQSEGKTMRLLRNKV 531
                 799999999977744559999******************.99999999998889998888764 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.0009
      AAA_18   3 ltGtpGvGKttlakeLskr 21 
                   G+ GvGKt+l+k L++ 
  CTQ29396.1 603 FLGPTGVGKTELCKTLANF 621
                 57**************764 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 1
      AAA_18 104 eelleRlekRgye 116
                 + l++Rle+Rgye
  CTQ29396.1 780 QRLYKRLEERGYE 792
                 569********98 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.035        16      34      56 ..     200     222 ..     176     233 .. 0.74
   2 ?    5.3   0.0     0.032        15      74      96 ..     258     283 ..     235     289 .. 0.80
   3 ?   -2.6   0.0       8.7     4e+03       9      51 ..     337     378 ..     332     384 .. 0.76
   4 !   10.2   0.0     0.001      0.48       8      57 ..     569     622 ..     562     641 .. 0.80
   5 ?   -0.5   0.0         2   9.2e+02      84     113 ..     670     699 ..     662     711 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.035
      RuvB_N  34 dhvllyGpPGlGkttlakiiake 56 
                 +  +l+G PG+Gkt++ + +a+ 
  CTQ29396.1 200 NNPVLIGEPGVGKTAIVEGLAQR 222
                 344688*********99887775 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.032
      RuvB_N  74 dlaalltnleekd...vlfideihrl 96 
                  l ++lt+l++++   +lfide+h +
  CTQ29396.1 258 RLKGVLTDLSKQEgnvILFIDELHTM 283
                 57788888877655559*******87 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 8.7
      RuvB_N   9 yigqekvkeklkifieaakkreealdhvllyGpPGlGkttlak 51 
                 +++  +v+++++i ++  k+r e   hv ++ p  +  +tl++
  CTQ29396.1 337 FVAEPSVEDTIAI-LRGLKERYELHHHVQITDPAIVAAATLSH 378
                 6666777777765.57889999999999999988888888775 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.001
      RuvB_N   8 eyigqekvkeklkifieaakk....reealdhvllyGpPGlGkttlakiiakel 57 
                   igq++  e ++ +i+ +++     ++++   l+ Gp G+Gkt l+k +a+ +
  CTQ29396.1 569 RVIGQDEAVEAVSNAIRRSRAglsdPNRPIGSFLFLGPTGVGKTELCKTLANFM 622
                 568999999998888887765221246788999***************999866 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 2
      RuvB_N  84 ekdvlfideihrlsraveevlysamedfrl 113
                 +  v+++de+ + ++ v ++l + ++d rl
  CTQ29396.1 670 PYSVILLDEVEKAHPDVFNILLQVLDDGRL 699
                 56799********************99876 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   9.8e-05     0.045      45     105 ..     197     261 ..     172     282 .. 0.81
   2 !    8.0   0.0    0.0048       2.2      50      75 ..     601     626 ..     596     648 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 9.8e-05
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavr....aglsvlfvrvedLveelkrarrdgklaralkr 105
                 ++k+n vl+G +GvGK+ +   l+++ v+    +gl+ + v + d+ + ++ a+  g+++++lk 
  CTQ29396.1 197 RTKNNPVLIGEPGVGKTAIVEGLAQRIVNgevpEGLKGRRVLALDMGALVAGAKYRGEFEERLKG 261
                 57899*******************99886444578888888888888888888888888877764 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0048
   IstB_IS21  50 ivllGpsGvGKshlaialgveavrag 75 
                 +++lGp+GvGK+ l  +l+     ++
  CTQ29396.1 601 FLFLGPTGVGKTELCKTLANFMFDSD 626
                 789************99997666655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.013       5.8       6      79 ..     203     286 ..     199     327 .. 0.73
   2 ?    0.9   0.4      0.95   4.3e+02      30      77 ..     416     465 ..     408     486 .. 0.75
   3 !   10.1   0.0    0.0013      0.61       8      90 ..     604     697 ..     600     712 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.013
      AAA_14   6 vitGaRrvGKTtllkqlikell.......vkkesilyinldderd.kkla.dpekllelilek.lkeekktylflDEiqevpew 79 
                 v+ G   vGKT +++ l+++          k +++l +++      +k++ ++e+ l+ +l    k+e++ +lf+DE + + ++
  CTQ29396.1 203 VLIGEPGVGKTAIVEGLAQRIVngevpegLKGRRVLALDMGALVAgAKYRgEFEERLKGVLTDlSKQEGNVILFIDELHTMVGA 286
                 566777899999999999887799888777777777777766444433333455445555555245589999******988554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.95
      AAA_14  30 kesilyinldderdkkladpe..kllelileklkeekktylflDEiqevp 77 
                 +++i+ ++l+++ +kk++d++  k l+++ e+l +++++y +l E  +++
  CTQ29396.1 416 DRRIIQLKLEQQALKKESDEAslKRLDMLNEELADKERQYSVLEEEWKAE 465
                 578999*****999999987755555777777666688888887765555 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.0013
      AAA_14   8 tGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe...........kllelileklkeekktylflDEiqev.pewekalkslvdeg 90 
                  G+  vGKT l+k+l++  + +++ ++ i++ +  +k +  ++           +   ++ e ++++  ++++lDE+ ++ p+++++l +++d+g
  CTQ29396.1 604 LGPTGVGKTELCKTLANFMFDSDDAMVRIDMSEFMEKHSV-SRlvgappgyvgyEEGGYLTEAVRRRPYSVILLDEVEKAhPDVFNILLQVLDDG 697
                 6999***********9777777788888888886664322.212334444444322233334343345567******987689999999999987 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0048       2.2       4      42 ..     183     221 ..     180     227 .. 0.89
   2 ?    5.0   0.0     0.043        20     102     135 ..     255     286 ..     242     358 .. 0.80
   3 ?    4.6   0.0     0.058        27      26      52 ..     604     630 ..     595     658 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0048
    ATPase_2   4 RekelkeleeilerepneiyfiYGpegsGKtaLlkeiie 42 
                 R++e+++  ++l+r +++  ++ G  g+GKta++  +++
  CTQ29396.1 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQ 221
                 99************999999999*********9987665 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.043
    ATPase_2 102 vfkaielllekikkkgkkiiiiiDelqklidlgl 135
                  ++ ++ +l +++k+   +i++iDel  ++  g 
  CTQ29396.1 255 FEERLKGVLTDLSKQEGNVILFIDELHTMV--GA 286
                 567889999*****************9998..43 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.058
    ATPase_2  26 YGpegsGKtaLlkeiienledkdkyvi 52 
                  Gp g+GKt L k +++   d+d+  +
  CTQ29396.1 604 LGPTGVGKTELCKTLANFMFDSDDAMV 630
                 4*************9998877666544 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.017       7.6       3      25 ..     200     222 ..     198     284 .. 0.83
   2 !   13.7   0.0   8.3e-05     0.038       6      85 ..     602     690 ..     600     706 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.017
      AAA_24   3 lkiliyGpsgiGKTtlakelgpk 25 
                 ++ +++G++g+GKT ++  l ++
  CTQ29396.1 200 NNPVLIGEPGVGKTAIVEGLAQR 222
                 56699*********999887444 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 8.3e-05
      AAA_24   6 liyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel...........aaeladyktlviDtideleelclaev 85 
                 l  Gp g+GKT l+k+l    +++d ++ + ++d  +f + +s+  ++ +               a   ++y+++ +D ++++   +++ +
  CTQ29396.1 602 LFLGPTGVGKTELCKTL--ANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYvgyeeggylteAVRRRPYSVILLDEVEKAHPDVFNIL 690
                 678**************..67789****9*9***999997766666665544448889999999988999999999999999987776655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0042       1.9      32      56 ..     198     222 ..     184     229 .. 0.78
   2 !   11.2   0.0   0.00044       0.2      36      80 ..     601     645 ..     597     650 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0042
       AAA_7  32 nkkpvllvGptGtGKtviikdllkk 56 
                  k++ +l+G+ G+GKt+i++ l ++
  CTQ29396.1 198 TKNNPVLIGEPGVGKTAIVEGLAQR 222
                 45566789***********997765 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00044
       AAA_7  36 vllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqd 80 
                 +l+ GptG+GKt ++k+l + + +++  ++ i +s  ++ +++ +
  CTQ29396.1 601 FLFLGPTGVGKTELCKTLANFMFDSDDAMVRIDMSEFMEKHSVSR 645
                 79***************9999988999999999999888877766 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0041       1.9       3      23 ..     203     223 ..     202     231 .. 0.85
   2 !   10.1   0.0    0.0016      0.71       3      37 ..     602     635 ..     600     646 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0041
                 EEESSTTSSHHHHHHCHCT-C CS
         Roc   3 vlvGdsgvGKtsllkrfvedk 23 
                 vl+G+ gvGKt +++ + ++ 
  CTQ29396.1 203 VLIGEPGVGKTAIVEGLAQRI 223
                 79***********99887765 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0016
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEE CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdfl 37 
                 +++G +gvGKt l+k + +  f+++ ++++ +d++
  CTQ29396.1 602 LFLGPTGVGKTELCKTLANFMFDSD-DAMVRIDMS 635
                 789***************9999766.566666654 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0093       4.3       3      23 ..     204     224 ..     203     236 .. 0.88
   2 !    9.6   0.0    0.0025       1.1       2      23 ..     602     623 ..     601     642 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0093
  RNA_helicase   3 lyGpsgeGKStlakeLakall 23 
                   l G++g+GK+ +++ La+++ 
    CTQ29396.1 204 LIGEPGVGKTAIVEGLAQRIV 224
                   78***************9987 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0025
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   ++ Gp+g+GK+ l+k+La+ + 
    CTQ29396.1 602 LFLGPTGVGKTELCKTLANFMF 623
                   589*************987655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0036       1.7       6      43 ..     186     223 ..     182     229 .. 0.79
   2 ?    6.6   0.0     0.016       7.5      22      42 ..     601     621 ..     571     630 .. 0.71
   3 ?   -1.0   0.0       3.6   1.7e+03      20      34 ..     830     844 ..     815     847 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0036
                 HHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE   6 etealgkklakalgdvilLeGdLGaGKTtlvrglakal 43 
                 e+++  + l++ +++  +L G+ G+GKT++v gla+ +
  CTQ29396.1 186 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223
                 556666667666677899*****************986 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.016
                 EEEEESTTSSHHHHHHHHHHH CS
        TsaE  22 ilLeGdLGaGKTtlvrglaka 42 
                 +l+ G+ G+GKT l++ la+ 
  CTQ29396.1 601 FLFLGPTGVGKTELCKTLANF 621
                 7899*************9975 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3.6
                 EEEEEEESTTSSHHH CS
        TsaE  20 dvilLeGdLGaGKTt 34 
                 +  +L+G+L  GKT 
  CTQ29396.1 830 AQQILSGELVPGKTI 844
                 34689********95 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0032       1.5      88     122 ..     189     222 ..     156     235 .. 0.72
   2 !    7.7   0.0    0.0066         3     100     121 ..     599     620 ..     539     638 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0032
                  TTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  88 egleelkellkdktsvlvGqSGvGKStLinallpe 122
                  ++++ l+ + +++  vl+G+ GvGK+++++ l+++
   CTQ29396.1 189 RTIQVLQ-RRTKNNPVLIGEPGVGKTAIVEGLAQR 222
                  3344444.44455689*************999876 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0066
                  SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallp 121
                     +++G++GvGK+ L ++l++
   CTQ29396.1 599 GSFLFLGPTGVGKTELCKTLAN 620
                  56789*********99999875 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.025        11      21      45 ..     198     222 ..     177     249 .. 0.72
   2 !    7.2   0.0    0.0064         3      24      52 ..     600     628 ..     569     652 .. 0.78
   3 ?    1.2   0.0      0.43     2e+02     108     136 ..     672     700 ..     640     721 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.025
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlpsl 45 
                    + n +l+G pG GKt + + l++ 
    CTQ29396.1 198 TKNNPVLIGEPGVGKTAIVEGLAQR 222
                   456789***********99888765 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0064
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllpplsee 52 
                   ++l++Gp G GKt l k l++ + + +++
    CTQ29396.1 600 SFLFLGPTGVGKTELCKTLANFMFDSDDA 628
                   579****************9998765543 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.43
  Mg_chelatase 108 GvLfLDElpefkrkvlevLRePledgevt 136
                    v++LDE+ + + +v+++L + l+dg++t
    CTQ29396.1 672 SVILLDEVEKAHPDVFNILLQVLDDGRLT 700
                   699*********************99986 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00034      0.16       4      33 ..     203     232 ..     202     283 .. 0.82
   2 ?    3.4   0.0      0.14        63       5      23 ..     603     621 ..     600     646 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00034
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCCCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpqga 33 
                 +l Ge+G+GKT+ +++la+ +  g+ p+g 
  CTQ29396.1 203 VLIGEPGVGKTAIVEGLAQRIVNGEVPEGL 232
                 689*****************9999988765 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.14
                 EEC-TTTCHHHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqklala 23 
                   G+ G+GKT L + la  
  CTQ29396.1 603 FLGPTGVGKTELCKTLANF 621
                 68***********999865 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.059        27       4      23 ..     204     223 ..     202     228 .. 0.87
   2 !    8.7   0.0    0.0032       1.5      63     110 ..     671     718 ..     601     723 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.059
       AAA_3   4 legvPGlaktllvkalakal 23 
                 l g PG++kt +v+ la+ +
  CTQ29396.1 204 LIGEPGVGKTAIVEGLAQRI 223
                 6789*************976 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0032
       AAA_3  63 anllladeinrappktqsalleameerqvtve.gethklpepflvlatq 110
                  +++l de+++a p +   ll+++++ ++t + g+t ++ ++ +v+ t 
  CTQ29396.1 671 YSVILLDEVEKAHPDVFNILLQVLDDGRLTDGqGRTVDFRNT-VVIMTS 718
                 4799************************99751455555555.444455 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0012      0.54      41      80 ..     187     226 ..     155     283 .. 0.77
   2 ?   -2.6   0.1       5.2   2.4e+03     152     183 ..     441     470 ..     436     477 .. 0.80
   3 ?    4.1   0.0     0.049        23      53      96 ..     598     641 ..     551     651 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0012
      DUF815  41 venteqfleglpannvLLwGarGtGKSslvkallneyaee 80 
                 ++ t q l+ ++ nn +L+G+ G+GK ++v  l +++ + 
  CTQ29396.1 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNG 226
                 567889999999********************99988664 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.2
      DUF815 152 RhLlpeklsdneeleeeeihaseaveeklsLs 183
                  ++l+e+l+d+e+  +  + ++e   ek sLs
  CTQ29396.1 441 LDMLNEELADKER--QYSVLEEEWKAEKASLS 470
                 4688899999888..88888999999999998 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.049
      DUF815  53 annvLLwGarGtGKSslvkallneyaeegLrlievekedlkelp 96 
                     L+ G  G+GK  l+k+l n + ++  +++ ++ ++  e  
  CTQ29396.1 598 IGSFLFLGPTGVGKTELCKTLANFMFDSDDAMVRIDMSEFMEKH 641
                 445799*****************999999999999888776655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.3    0.0033       1.5       3      79 ..     203     278 ..     201     384 .. 0.61
   2 ?   -1.2   0.1       4.5   2.1e+03      47      71 ..     406     431 ..     372     485 .. 0.65
   3 ?    5.4   0.0     0.043        20       3      21 ..     602     620 ..     600     637 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0033
      AAA_28   3 vitGgestGKTtlleaLaar..gypvvpE..aareileeklakgedalpwvedllafaervleeqleeeaaaaankvlfcD 79 
                 v++G ++ GKT ++e La+r  + + vpE   +r++l   +      +++   + +f+er l+  l ++ ++++n +lf+D
  CTQ29396.1 203 VLIGEPGVGKTAIVEGLAQRivNGE-VPEglKGRRVLALDMGALVAGAKY---RGEFEER-LKGVLTDLSKQEGNVILFID 278
                 89*****************965333.333124566665555444432322...3455553.55566666665555555555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 4.5
      AAA_28  47 pwv.edllafaervleeqleeeaaaa 71 
                 ++  e+l ++ +r+++ +le++a  +
  CTQ29396.1 406 DSKpEELDRLDRRIIQLKLEQQALKK 431
                 33334444444444444444444432 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.043
      AAA_28   3 vitGgestGKTtlleaLaa 21 
                  ++G+ + GKT l++ La+
  CTQ29396.1 602 LFLGPTGVGKTELCKTLAN 620
                 689**************96 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.13        60      15      35 ..     203     223 ..     194     250 .. 0.86
   2 ?    0.6   0.7       1.6   7.4e+02      43      80 ..     423     477 ..     400     527 .. 0.61
   3 !    8.3   0.0    0.0067       3.1      16      37 ..     603     624 ..     599     648 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.13
                 EEEESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagll 35 
                 +++Ge G GK+ +++ la+  
  CTQ29396.1 203 VLIGEPGVGKTAIVEGLAQRI 223
                 79***********99888765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.6
                 EETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx................x RF
    ABC_tran  43 lldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren................e 80 
                 +l+++ lk+++ e + k++ +l +e +   ++++v e+                +
  CTQ29396.1 423 KLEQQALKKESDEASLKRLDMLNEElADKERQYSVLEEewkaekaslsgtqtikA 477
                 5667777777777777777777777545555555666555555444433333331 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0067
                 EEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagllkp 37 
                 ++G++G GK+ L+k+la+ + +
  CTQ29396.1 603 FLGPTGVGKTELCKTLANFMFD 624
                 79**************987644 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.077        35      10      49 ..     185     224 ..     153     238 .. 0.77
   2 ?   -0.4   0.0       2.1   9.7e+02     128     146 ..     267     285 ..     249     303 .. 0.76
   3 ?    6.2   0.0     0.021       9.7       8      45 ..     573     619 ..     569     629 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.077
                 HHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH- CS
      ResIII  10 eaienlleklkskrdkrglikmaTGtGKTlvaaklierll 49 
                 e i+++++ l+ + +++ ++  + G+GKT +   l++r+ 
  CTQ29396.1 185 EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 224
                 446667777765777788899*********9988887765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 2.1
                 HHTTT-SEEEEETGGGTTS CS
      ResIII 128 llrdrfdviiiDEaHrlga 146
                  +++ + +++iDE H + +
  CTQ29396.1 267 SKQEGNVILFIDELHTMVG 285
                 4555666999*****8876 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.021
                 HHHHHHHHT..............TTS.EEEEEESTTSTHHHHHHHHH CS
      ResIII   8 Qeeaienlleklks........krdk.rglikmaTGtGKTlvaakli 45 
                 Q ea+e++ +++          +r    +l+  +TG+GKT ++  l+
  CTQ29396.1 573 QDEAVEAVSNAIRRsraglsdpNRPIgSFLFLGPTGVGKTELCKTLA 619
                 888888888888777777765433337899**********8875555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0011      0.51      37     109 ..     203     278 ..     177     307 .. 0.75
   2 ?    1.2   0.0      0.52   2.4e+02      37      55 ..     602     620 ..     575     629 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0011
      AAA_25  37 llaGapgtGKttlaldlalavatGkpwlg....pvap..eqgkVlyvsaEdsedelrrRlravgealrddarllvldla 109
                 +l+G pg+GKt+++  la  ++ G+ +++    + ++    +  l+  a   + e+++Rl+ v+++l+ +++  +l ++
  CTQ29396.1 203 VLIGEPGVGKTAIVEGLAQRIVNGE-VPEglkgR-RVlaLDMGALVAGAK-YRGEFEERLKGVLTDLSKQEGNVILFID 278
                 699*******************999.44447642.332244444444444.4559999999999999777777666654 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.52
      AAA_25  37 llaGapgtGKttlaldlal 55 
                 l+ G++g+GKt l+  la 
  CTQ29396.1 602 LFLGPTGVGKTELCKTLAN 620
                 678********99987775 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.06        28      10      40 ..     193     223 ..     184     228 .. 0.74
   2 ?    7.4   0.0     0.005       2.3      20      58 ..     602     641 ..     582     651 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.06
  Zeta_toxin  10 ypsqerPklillgGqpGAGKselaellkdel 40 
                 + +++++   +l G pG GK+++ e l++++
  CTQ29396.1 193 VLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223
                 4555666666788***********9999876 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.005
  Zeta_toxin  20 llgGqpGAGKselaellkdele.rqgnvvrldpDdlRelh 58 
                 l  G +G GK+el + l++ +  +++ +vr+d  ++ e h
  CTQ29396.1 602 LFLGPTGVGKTELCKTLANFMFdSDDAMVRIDMSEFMEKH 641
                 345899**************99899*******99998877 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1    0.0018      0.84       9      38 ..     198     227 ..     190     397 .. 0.77
   2 ?    1.4   0.0      0.78   3.6e+02      13      37 ..     601     625 ..     595     646 .. 0.83
   3 ?   -1.4   0.0       5.7   2.6e+03     102     126 ..     669     694 ..     654     700 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0018
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelg 38 
                 ++++ ++++ pG GKT ++++  + +v+ +
  CTQ29396.1 198 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGE 227
                 56677899***********99988877655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.78
      AAA_19  13 llvtaGpGtGKTrvlkhivallvel 37 
                 +l +++ G GKT++ k+  + + + 
  CTQ29396.1 601 FLFLGPTGVGKTELCKTLANFMFDS 625
                 5778999******999988777665 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 5.7
      AAA_19 102 eee.llivDEfqdvdelqyrLlkall 126
                 + + +++ DE+    +  +++l ++l
  CTQ29396.1 669 RPYsVILLDEVEKAHPDVFNILLQVL 694
                 445599*********66666665555 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.29   1.3e+02       2      19 ..     205     222 ..     204     228 .. 0.87
   2 ?    8.8   0.0    0.0028       1.3       2      26 ..     604     628 ..     603     644 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.29
  ATP_bind_1   2 vGpaGsGKttfvgalsei 19 
                 +G +G+GKt +v+ l++ 
  CTQ29396.1 205 IGEPGVGKTAIVEGLAQR 222
                 8***********999886 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0028
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrs 26 
                 +Gp G+GKt ++++l++++ ++   
  CTQ29396.1 604 LGPTGVGKTELCKTLANFMFDSDDA 628
                 7*****************9988443 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.011       4.9       4      27 ..     204     227 ..     201     238 .. 0.84
   2 ?    4.2   0.0      0.08        37       6      22 ..     605     621 ..     600     631 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.011
                 EE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellkssg 27 
                 + G+pGvGKt +v+ +++ + + +
  CTQ29396.1 204 LIGEPGVGKTAIVEGLAQRIVNGE 227
                 67************9999986655 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.08
                 --TTSSHHHHHHHHHHH CS
    NTPase_1   6 GppGvGKtTlvkkvlel 22 
                 Gp GvGKt l+k +++ 
  CTQ29396.1 605 GPTGVGKTELCKTLANF 621
                 9**********999876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.038        18       4      22 ..     204     222 ..     203     228 .. 0.90
   2 ?    5.1   0.0     0.051        24       3      21 ..     602     620 ..     601     653 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.038
      AAA_33   4 lvGlpGsGKstlaerllkk 22 
                 l+G pG+GK+  +e+l+++
  CTQ29396.1 204 LIGEPGVGKTAIVEGLAQR 222
                 89*************9975 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.051
      AAA_33   3 llvGlpGsGKstlaerllk 21 
                 l+ G+ G+GK+ l + l++
  CTQ29396.1 602 LFLGPTGVGKTELCKTLAN 620
                 799**********999973 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.025        11      18      48 ..     597     627 ..     577     639 .. 0.88
   2 ?    4.5   0.0     0.057        26     102     128 ..     669     695 ..     660     698 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.025
  DNA_pol3_delta2  18 lahayLfeGdegigkkelalnlakallceek 48 
                         ++Lf G++g+gk el ++la+ ++ +++
       CTQ29396.1 597 PIGSFLFLGPTGVGKTELCKTLANFMFDSDD 627
                      55689*******************9998765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.057
  DNA_pol3_delta2 102 skkkiiiiedaekmtksAaNalLktlE 128
                        + +i+++++ek ++   N+lL++l 
       CTQ29396.1 669 RPYSVILLDEVEKAHPDVFNILLQVLD 695
                      5689********************996 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.023        11      19      42 ..     196     219 ..     188     227 .. 0.79
   2 ?    4.5   0.0     0.065        30      23      38 ..     599     614 ..     592     625 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.023
      AAA_29  19 idlkgatlltGpsGsGKSTllDAi 42 
                  ++k++ +l+G+ G+GK++++  +
  CTQ29396.1 196 RRTKNNPVLIGEPGVGKTAIVEGL 219
                 45556889************9765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.065
      AAA_29  23 gatlltGpsGsGKSTl 38 
                 g++l+ Gp+G+GK+ l
  CTQ29396.1 599 GSFLFLGPTGVGKTEL 614
                 679**********866 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.27   1.2e+02       5      26 ..     203     224 ..     199     232 .. 0.87
   2 ?    7.9   0.0    0.0047       2.2       4      27 ..     601     624 ..     599     634 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.27
                 EEEESTTSSHHHHHHHHHHHHH CS
       SRP54   5 llvGlqGaGKTttlaKLaallk 26 
                 +l+G  G+GKT  +  La+++ 
  CTQ29396.1 203 VLIGEPGVGKTAIVEGLAQRIV 224
                 799**************99876 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0047
                 EEEEESTTSSHHHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaallkk 27 
                 +l++G++G+GKT  +  La+ + +
  CTQ29396.1 601 FLFLGPTGVGKTELCKTLANFMFD 624
                 699****************98765 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.85   3.9e+02       5      23 ..     203     221 ..     200     227 .. 0.84
   2 ?    8.2   0.0    0.0042       1.9       5      23 ..     602     620 ..     599     632 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.85
   PduV-EutP   5 lliGkvgsGKttLtqalkg 23 
                 +liG+ g+GKt++ + l +
  CTQ29396.1 203 VLIGEPGVGKTAIVEGLAQ 221
                 69*********99887766 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0042
   PduV-EutP   5 lliGkvgsGKttLtqalkg 23 
                 l++G++g+GKt L+++l +
  CTQ29396.1 602 LFLGPTGVGKTELCKTLAN 620
                 89**************986 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0013      0.59      15      80 ..     558     625 ..     550     644 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0013
                 -HHHHHHHHHHH--S-HHHHHHHHHHHH.HHHT-SS-SS-E.EEEEEE-TTSSHHHHHHHHHHHHSTT CS
      Torsin  15 nleeLekdlekklfGqhlvkklvvksvk.aylenekpkkpL.vlsfhGwtGtGknfvaeiiaenlyrd 80 
                 +l  +e++l+++++Gq  + + v ++++ +     +p++p+  + f G tG Gk  +++ +a+ ++ +
  CTQ29396.1 558 KLLRMEQELHHRVIGQDEAVEAVSNAIRrSRAGLSDPNRPIgSFLFLGPTGVGKTELCKTLANFMFDS 625
                 5667899********************72455667999999457799****************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (857 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1291  (0.0720062); expected 358.6 (0.02)
Passed bias filter:                      746  (0.0416086); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              39  [number of targets reported over threshold]
# CPU time: 0.92u 0.28s 00:00:01.20 Elapsed: 00:00:00.45
# Mc/sec: 5785.49
//
Query:       CTQ29397.1  [L=243]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-80  268.7   0.0    4.5e-80  268.6   0.0    1.0  1  Cu-oxidase_4  Multi-copper polyphenol oxidoreductase laccase


Domain annotation for each model (and alignments):
>> Cu-oxidase_4  Multi-copper polyphenol oxidoreductase laccase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.6   0.0   2.5e-84   4.5e-80       1     231 []      20     241 ..      20     241 .. 0.92

  Alignments for each domain:
  == domain 1  score: 268.6 bits;  conditional E-value: 2.5e-84
                   E-S-SS-B-GGG-B----SSSSS-HHHHHHHHHHHHHHTTS..GEEE-B--SS--EEE-EE--GGCSSSS..B..-SEEEESSTTSEEEEEESSSEE CS
  Cu-oxidase_4   1 ttregGvsegpyaslNlglhvgDdpeaVaenrrrlaaalgv..rlvlleqvHgtevvvvaeeaaakgsaeeeeleaDalvtdepgvalavltADCvP 95 
                   +tr gGvs +py+slNlg h+gD+ ++V+enrrr+ aa g+    v+leqvHgtev +++    +       + +aDa ++++pg+++av+tADC+P
    CTQ29397.1  20 STRIGGVSLPPYDSLNLGAHCGDNLQDVEENRRRMFAAGGLpsYPVWLEQVHGTEVLTLDG---GP----YPSKRADASYSRTPGTVCAVMTADCLP 109
                   69************************************99987688**********66654...31....222349********************* PP

                   EEEEETTSSEEEEEEE-HHHHHHTHHHHHHHHHCSTT--GGGEEEEE-SB--TTT-EEEHHHHHHHHHHSGGGG.EEEEETTEEEE-HHHHHHHHHH CS
  Cu-oxidase_4  96 vlladpkgkvvaaaHaGwrGlvagvlektveamkelgakpedilaaiGPsIgpecyeVgeevaeafeaadpeaa.aaaeeegkaylDLaalarlqLe 191
                   vl+++++g+ vaaaHaGwrGl++gvle+tv+++++   k+e+i+a++GP+Igp+++eVg ev++af+a+d++a+ a + + +k+++D+++lar++L+
    CTQ29397.1 110 VLFCNRDGTEVAAAHAGWRGLCEGVLEATVARFAD---KAENIMAWLGPAIGPQAFEVGPEVRDAFMAKDENAHrAFRPAGEKYFADIYQLARQRLA 203
                   *********************************99...99***************************999998855555556767************ PP

                   HTT-..SEEEE---BTTT-TTT---HHHHSH---EEEEEE CS
  Cu-oxidase_4 192 eaGvkeenieasglCTvceedrfFSyRrdggtGrmaaliw 231
                   ++Gv  e+i + + CT++e+d+fFSyRrd++tGrma++iw
    CTQ29397.1 204 NVGV--EQIFGGDRCTLSEKDDFFSYRRDKTTGRMASFIW 241
                   ****..***********************77********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1850.46
//
Query:       CTQ29398.1  [L=326]
Description: 23S rRNA pseudouridine synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-30  105.3   0.0    4.4e-30  104.9   0.0    1.2  1  PseudoU_synth_2  RNA pseudouridylate synthase
      2e-10   40.2   0.0    3.4e-10   39.5   0.0    1.4  1  S4               S4 domain
  ------ inclusion threshold ------
       0.06   13.7   0.0        0.1   13.0   0.0    1.3  1  TruB_N           TruB family pseudouridylate synthase (N term


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.0   7.4e-34   4.4e-30       1     160 []      92     242 ..      92     242 .. 0.96

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 7.4e-34
  PseudoU_synth_2   1 dlvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeega 94 
                      d++v+nKP +++v+p+a +   ++      + ++  ++ + ++vhRLDk+t+Gl+++Ak+  a  +l ++++ r+++++Y a+  ++ + + g+
       CTQ29398.1  92 DIIVINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVA-IGHMTAGGT 184
                      589**************888888888888899999************************************************9.6******** PP

  PseudoU_synth_2  95 ikkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhlaa 160
                      ++++is+   +  ++++ a +  gk avt++++++++       ++ ++l+letGr+hQiRvh+++
       CTQ29398.1 185 VEEPISR---HPTKRTHMAVHPMGKPAVTHYRIMEHF-----RIHTRLRLRLETGRTHQIRVHMSH 242
                      *******...99*************************.....**********************86 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   5.6e-14   3.4e-10       1      48 []      18      65 ..      18      65 .. 0.98

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 5.6e-14
                EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4  1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48
                +RLd+ la+l +  sr+ ++++I ++rVlVNG + ++p+ +V +g++i
  CTQ29398.1 18 QRLDQALAELFPDYSRSRIKEWILDQRVLVNGTIGDKPKEKVLGGERI 65
                6********************************************987 PP

>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.7e-05       0.1       5      55 ..     128     181 ..     125     206 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.7e-05
                 T-S-EEESS---TT-EEEEEEE..EGGGGGGHHHCT..TS-EEEEEEEEETEEET CS
      TruB_N   5 kakkvGhtGtLDplatGvLvva..vgeaTklleyll..eadKeYeatirlgaetd 55 
                 ++ ++G  + LD+  tG++vva  +  +T+l+e+l+  e ++eYea++ +g  t+
  CTQ29398.1 128 DVPRAGIVHRLDKDTTGLMVVAktIPAQTRLVESLQlrEITREYEAVA-IGHMTA 181
                 56799****************755789******999445569**9864.455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.29s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2360.68
//
Query:       CTQ29399.1  [L=245]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-84  281.2   4.8    5.5e-84  281.0   4.8    1.0  1  YfiO      Outer membrane lipoprotein
    1.8e-69  232.5   6.7    5.2e-69  231.0   3.8    2.0  2  TPR_18    Tetratricopeptide repeat
    0.00015   21.9   0.3       0.45   10.8   0.0    2.8  3  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
      0.011   15.9   0.1        4.1    7.6   0.0    2.8  3  TPR_9     Tetratricopeptide repeat
      0.012   16.3   9.5       0.34   11.7   0.1    4.5  5  TPR_6     Tetratricopeptide repeat
      0.022   14.5   2.0       0.03   14.0   0.1    2.1  3  TPR_21    Tetratricopeptide repeat-like domain
      0.029   15.0   0.7       0.92   10.2   0.1    2.7  2  TPR_16    Tetratricopeptide repeat
      0.039   14.8   0.1        7.4    7.7   0.0    3.3  3  TPR_14    Tetratricopeptide repeat
      0.049   14.1   1.7       0.36   11.4   0.9    2.7  2  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> YfiO  Outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.0   4.8   2.7e-87   5.5e-84       1     202 [.      28     236 ..      28     237 .. 0.98

  Alignments for each domain:
  == domain 1  score: 281.0 bits;  conditional E-value: 2.7e-87
                 ----HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-SSSTTHHHHHHHHHHHHHHHHSHSC.. CS
        YfiO   1 pdktaselYekgqealqkgdyaeAikklealdsryPfspyaeqaqldliyAyykdadyaealasaerFlrlyPthknvdyvlYlrglsalaqarell.. 97 
                 pd++++e+Y ++q++lq+g++++Ai++leald+ryPf+py++q+qldliyAyyk+ad++ a+a+++rF+rl+Pth+n+dyv+Y+rgl+++a +++ l  
  CTQ29399.1  28 PDNPPNEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFMRLNPTHPNIDYVIYMRGLTNMALDDSALqg 126
                 6899*****************************************************************************************999999 PP

                 .....TTTS-THHHHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT CS
        YfiO  98 .....rskrdpesarqafedfkklvekyPdseYaadakkrltelrerLArhElevaefylkreayvaainRvkevlknypdtesveeaLaimveayral 191
                      rs+rdp++ar+af+df+klv+ yP+s+Ya+da kr+++l++rLA++El+v+++y+ r+a+va++nRv+ +++nypdt+++++aL  m+++yr++
  CTQ29399.1 127 ffgvdRSDRDPQHARDAFNDFSKLVRGYPNSQYATDAYKRMVFLKDRLAKYELSVVDYYTDRGAWVAVVNRVEGMMRNYPDTQATRDALPKMENSYRQM 225
                 99************************************************************************************************* PP

                 T-HHHHHHHHH CS
        YfiO 192 gleaaaeeaak 202
                 +++a+a++ ak
  CTQ29399.1 226 QMNAQADKVAK 236
                 ******99876 PP

>> TPR_18  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.0   3.8   2.6e-72   5.2e-69       2     145 .]      24     167 ..      23     167 .. 0.99
   2 ?    2.4   0.0     0.076   1.5e+02      24     144 ..     189     217 ..     178     244 .. 0.57

  Alignments for each domain:
  == domain 1  score: 231.0 bits;  conditional E-value: 2.6e-72
      TPR_18   2 keavpdvpeaelyqeaqkaldegnyltaieqLealdtryPfGaYaeqaqLDLiYakykskdyelavasidrfirlnPahpkiDyvlYlrglanmaldks 100
                 ke vpd+p++e+y++aq++l++gn+++ai+qLeald+ryPfG+Y++q+qLDLiYa+yk++d++la+a+idrf+rlnP+hp+iDyv+Y+rgl+nmald+s
  CTQ29399.1  24 KEEVPDNPPNEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFMRLNPTHPNIDYVIYMRGLTNMALDDS 122
                 789************************************************************************************************ PP

      TPR_18 101 slqslvsldrsdrdteaakaafrdfkrLlsryPnseYaaDaakrl 145
                 +lq ++ +drsdrd+++a++af+df++L++ yPns+Ya+Da kr+
  CTQ29399.1 123 ALQGFFGVDRSDRDPQHARDAFNDFSKLVRGYPNSQYATDAYKRM 167
                 ********************************************9 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.076
      TPR_18  24 gnyltaieqLealdtryPfGaYaeqaqLDLiYakykskdyelavasidrfirlnPahpkiDyvlYlrglanmaldksslqslvsldrsdrdteaakaaf 122
                 g ++  ++++e +   yP                                                                                 
  CTQ29399.1 189 GAWVAVVNRVEGMMRNYP--------------------------------------------------------------------------------- 206
                 555555555555555555................................................................................. PP

      TPR_18 123 rdfkrLlsryPnseYaaDaakr 144
                            + + + Da  +
  CTQ29399.1 207 -----------DTQATRDALPK 217
                 ...........44444444333 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00023      0.45      21      49 ..      30      58 ..       6      65 .. 0.86
   2 !    8.4   0.0    0.0013       2.5      29      62 ..      75     109 ..      62     114 .. 0.90
   3 ?   -2.0   0.0       2.2   4.3e+03       3      17 ..     162     176 ..     160     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
                --HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3 21 espedayllAlclylngqykrAyellrka 49
                + p+ +y+ A+  +++g++k+A++ l+ +
  CTQ29399.1 30 NPPNEIYATAQQKLQDGNWKQAITQLEAL 58
                67899*******************99987 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0013
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHH CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnskslgcrylf 62 
                 l +++y+n +   A+  ++++ +ln++++++ y++
  CTQ29399.1  75 LIYAYYKNADLPLAQAAIDRFmRLNPTHPNIDYVI 109
                 5799****************************986 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.2
                 T-HHHHHHHHHHHH. CS
      ANAPC3   3 nnyknAiflaerlla 17 
                  +yk  +fl +rl +
  CTQ29399.1 162 DAYKRMVFLKDRLAK 176
                 579999999999985 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0021       4.1      25      54 ..      28      57 ..       5      71 .. 0.88
   2 ?    5.4   0.0      0.01        21       5      39 ..      79     116 ..      75     123 .. 0.73
   3 ?   -3.9   0.0       8.1   1.6e+04      45      55 ..     137     147 ..     135     152 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0021
       TPR_9 25 aPddpeerrdRGlllaqlGclsaAladLea 54
                + ++p e++  ++   q G++++A+  Lea
  CTQ29399.1 28 PDNPPNEIYATAQQKLQDGNWKQAITQLEA 57
                7789************************97 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.01
       TPR_9   5 aireedweralavverllllaPddp...eerrdRGlll 39 
                 +  + d + a a+++r + l+P +p   + ++ RGl +
  CTQ29399.1  79 YYKNADLPLAQAAIDRFMRLNPTHPnidYVIYMRGLTN 116
                 66788999999***********9993333455555555 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 8.1
       TPR_9  45 lsaAladLeay 55 
                 ++ A+++++ +
  CTQ29399.1 137 PQHARDAFNDF 147
                 66777777766 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00017      0.34       7      31 ..      37      63 ..      35      64 .. 0.88
   2 ?    2.9   0.2       0.1     2e+02       4      32 ..      73     101 ..      70     102 .. 0.81
   3 ?    4.8   0.0     0.025        51      14      33 .]     138     157 ..     107     157 .. 0.74
   4 ?   -2.2   0.0       4.3   8.6e+03      28      33 .]     203     208 ..     202     208 .. 0.84
   5 ?   -1.0   0.1       1.9   3.8e+03       9      22 ..     221     234 ..     220     241 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
                HHHHHH.H.HHHHHHHHHHHHHHHH-T CS
       TPR_6  7 alsyrk.l.gdtdkAlealerlikeYP 31
                a +++k + g++ +A++ le l ++YP
  CTQ29399.1 37 ATAQQKlQdGNWKQAITQLEALDNRYP 63
                7788884588****************9 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.1
                 HHHHHHHHH.HHHHHHHHHHHHHHHHH-TT CS
       TPR_6   4 yklalsyrk.lgdtdkAlealerlikeYPd 32 
                 + l ++y+k + d   A +a +r+ +  P+
  CTQ29399.1  73 LDLIYAYYKnA-DLPLAQAAIDRFMRLNPT 101
                 556689**955.********9999998886 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.025
                 HHHHHHHHHHHHHHHH-TT- CS
       TPR_6  14 gdtdkAlealerlikeYPdS 33 
                 + +++A   + +l++ YP+S
  CTQ29399.1 138 QHARDAFNDFSKLVRGYPNS 157
                 467789999**********9 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 4.3
                 HH-TT- CS
       TPR_6  28 keYPdS 33 
                 ++YPd+
  CTQ29399.1 203 RNYPDT 208
                 79**96 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAlea 22 
                 syr+++  ++A + 
  CTQ29399.1 221 SYRQMQMNAQADKV 234
                 79997788899876 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.5e-05      0.03      41     118 ..      34     112 ..       6     126 .. 0.84
   2 ?   -2.0   0.0       1.2   2.4e+03      54      76 ..     139     161 ..     121     165 .. 0.68
   3 ?   -1.6   0.1      0.91   1.8e+03      40      58 ..     219     237 ..     192     243 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
      TPR_21  41 alYqqlqeaveakdaakakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvle.kakdeelkalarlR 118
                 ++Y + q+++++++ ++a ++ e+l ++y+  +Y ++ +L l  a +++ dl  A+a++++ +  +  + +++ ++ +R
  CTQ29399.1  34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFMRlNPTHPNIDYVIYMR 112
                 78*******************************************************9998775244556666666666 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.2
      TPR_21  54 daakakeaaeeladeyggtaYaa 76 
                 +a +a + +++l+  y++++Ya 
  CTQ29399.1 139 HARDAFNDFSKLVRGYPNSQYAT 161
                 34456666777778888888875 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.91
      TPR_21  40 salYqqlqeaveakdaaka 58 
                  + Y q+q +++a++ ak+
  CTQ29399.1 219 ENSYRQMQMNAQADKVAKI 237
                 4456666665555555544 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.11   2.2e+02       3      23 ..      38      58 ..      36      66 .. 0.69
   2 ?   10.2   0.1   0.00046      0.92       1      52 [.      73     126 ..      73     140 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.11
      TPR_16  3 laraalragdyddAaaaleaa 23
                 a+  l+ g++ +A+ +lea+
  CTQ29399.1 38 TAQQKLQDGNWKQAITQLEAL 58
                566677888888888888553 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00046
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPd..aaeAllllgdaalrqgrlae 52 
                 l+l +a++++ d + A+aa +++ +++p +P    +  + +l ++al  + l++
  CTQ29399.1  73 LDLIYAYYKNADLPLAQAAIDRFMRLNPTHPNidYVIYMRGLTNMALDDSALQG 126
                 68899**********************999986677777777666666666665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0037       7.4       3      28 ..      34      59 ..      32      66 .. 0.85
   2 ?    2.7   0.0      0.15   2.9e+02       3      35 ..      71     103 ..      69     111 .. 0.88
   3 ?   -0.4   0.0       1.5     3e+03      15      29 ..     135     149 ..     128     170 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0037
      TPR_14  3 allalaeallalGdpdeAiallrral 28
                  +a a+  l+ G++++Ai+ l+++ 
  CTQ29399.1 34 EIYATAQQKLQDGNWKQAITQLEALD 59
                5689999****************975 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.15
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdda 35 
                 ++l+l  a++ + d+  A a+ +r  +l+P+++
  CTQ29399.1  71 VQLDLIYAYYKNADLPLAQAAIDRFMRLNPTHP 103
                 5799************9*999999999999886 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.5
      TPR_14  15 GdpdeAiallrrala 29 
                 +dp+ A++++++  +
  CTQ29399.1 135 RDPQHARDAFNDFSK 149
                 678888888877544 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.013        27      32      57 ..      39      64 ..       9      72 .. 0.79
   2 ?   11.4   0.9   0.00018      0.36       2      60 ..      43     104 ..      42     109 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.013
      TPR_19 32 AeallalgqldeAealLdalpeedpd 57
                A+  l+ g++++A+  L+al + +p 
  CTQ29399.1 39 AQQKLQDGNWKQAITQLEALDNRYPF 64
                5556788************9998886 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00018
      TPR_19   2 laegdyaeAlalleqalqe...dpknaearllLAeallalgqldeAealLdalpeedpddar 60 
                 l++g+  +A+  le++       p ++ ++l+L+ a++++ +l  A+a++d+ ++ +p +++
  CTQ29399.1  43 LQDGNWKQAITQLEALDNRypfGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFMRLNPTHPN 104
                 7899999**9999998555444455***************************9999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1809.60
//
Query:       CTQ29400.1  [L=111]
Description: cold shock protein associated with 30S ribosomal subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-22   79.1   0.0    3.7e-22   78.9   0.0    1.1  1  Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosoma


Domain annotation for each model (and alignments):
>> Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   2.1e-26   3.7e-22       2      84 ..       4      91 ..       3      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 2.1e-26
                     EEEECTS---HHHHHHHHHHHCCGGGG....-EEEEEEEEE....EEEEEEEEECTTEEEEEEEEESSHHHHHHHHHHHHHHHHHHCHHT CS
  Ribosomal_S30AE  2 eitgrnievtdalkeyvekkleklekyf...ieadVtlskk....kkvevtirlakgkviraeeesedlyaaidlavdklerqlrkykek 84
                     +it++++e+t+a++++v ++l+kl+k     i+ +++ls k    + +++ti++++g+   a++++ed+yaai+++++klerql k+++k
       CTQ29400.1  4 NITSKQMEITPAIRQHVADRLAKLDKWQthlINPHIILS-KepqgFIADATINTPNGHL-VASARHEDMYAAINELINKLERQLNKVQHK 91
                     8************************884446********.44678*******8775555.456789********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1098  (0.0612416); expected 358.6 (0.02)
Passed bias filter:                      678  (0.0378158); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 909.18
//
Query:       CTQ29401.1  [L=386]
Description: fused chorismate mutase P; prephenate dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-61  205.6   0.2    8.1e-61  205.0   0.2    1.2  1  PDT       Prephenate dehydratase
    1.6e-17   63.6   1.4    2.9e-17   62.8   1.4    1.4  1  CM_2      Chorismate mutase type II
  ------ inclusion threshold ------
      0.079   13.6   0.0       0.17   12.5   0.0    1.5  1  WWE       WWE domain


Domain annotation for each model (and alignments):
>> PDT  Prephenate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.0   0.2   1.3e-64   8.1e-61       1     181 [.     106     286 ..     106     288 .. 0.96

  Alignments for each domain:
  == domain 1  score: 205.0 bits;  conditional E-value: 1.3e-64
                 EEEES-TTSHHHHHHCCCS.......EEEEES-HHHHHHHHCTTS-SEEEEEEEESSS-B-HHHHHHHHH.SSEEEEEEEEEE---EEEE-TT--TTT- CS
         PDT   1 vaylGpegtyshqAalkvf..kaedvelipvasieevfeavekgeadyavvPiENsteGsVnetlDlLlkesdlkivgEvvlpiehcLlakpktkleei 97 
                 va+lGp+g+ysh Aa++++  + e++    +a+++++f++ve+g+adyavvPiEN+ +G +n+++DlL++ ++l+ivgE+++pi+hc l++++t+ ++i
  CTQ29401.1 106 VAFLGPKGSYSHLAARQYAarHFEQFIESGCAKFTDIFNQVETGQADYAVVPIENTSSGGINDVYDLLQH-TSLSIVGELTIPIDHCVLVSTSTDADKI 203
                 89****************965556666778****************************************.88************************** PP

                 -EEEE-HHHHHHTHHHHHH-.TTSEEEE-S-HHHHHHHHHHCT-TTEEEEE-HHHHHHTT-EEEECS-SS-S--EEEEEEEEET CS
         PDT  98 kkvyShpqalgQcrkfLeehlpqvervavestaeAakkveassdkdaaaiasevaaelyglkvleeniedkknntTRFlvlake 181
                 ++vyShpq ++Qc+++L+++ p+++++++est++A++kv+++++ ++aa++se    lygl+vle+   ++ +n+TRFlvla++
  CTQ29401.1 204 QTVYSHPQPFQQCSQYLSRY-PHWKIEYTESTSAAMEKVAQANSPAVAALGSEAGGALYGLQVLEHCQANQTQNITRFLVLARK 286
                 ********************.************************************************************997 PP

>> CM_2  Chorismate mutase type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   1.4   4.8e-21   2.9e-17       1      75 []      11      89 ..      11      89 .. 0.95

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 4.8e-21
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSGSS-HHHHHHHHHHHHH.HH...S-HHHHHHHHHHHHHHHHHHHH CS
        CM_2  1 RkeIdeiDdeileLLaeRaelakevgeyKkeeglpvydpeReaevlerlee.ga...ldeeaierifreiisasralqk 75
                R++I ++D+++l+LLaeR  la evg++K +++ pv+d +Re+++lerl++ g+   ld+++i+r+f+ ii+ s+  q+
  CTQ29401.1 11 RDKISALDEKLLALLAERRGLAVEVGKAKLASHRPVRDIDRERDLLERLMTiGKrhnLDAHYITRLFQLIIEDSVLTQQ 89
                99***************************99999*****************944567*****************99885 PP

>> WWE  WWE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.8e-05      0.17       6      61 ..     219     276 ..     218     280 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.8e-05
                 EEET.-TCEE.E--HHHHHHHHHHHHTT-SEE.EHHHHTTSTTEEEETTTTEEEETTT- CS
         WWE   6 wedd.ggeWe.eYspevsellEeayqkkkksv.elsfsvagapYtvdfnsmvQtnkgtg 61 
                 + ++ + +W+ eY++++s+ +E+  q++++ v  l  +++ga Y +   + +Q n++++
  CTQ29401.1 219 YLSRyP-HWKiEYTESTSAAMEKVAQANSPAVaALGSEAGGALYGLQVLEHCQANQTQN 276
                 556633.78779**************999998788999*****************9644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3119.99
//
Query:       CTQ29402.1  [L=290]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-74  249.5   0.0    3.9e-74  249.3   0.0    1.0  1  SGL           SMP-30/Gluconolactonase/LRE-like region
  ------ inclusion threshold ------
      0.033   14.3   0.0      0.074   13.2   0.0    1.6  2  Str_synth     Strictosidine synthase
      0.068   13.4   0.0        5.3    7.3   0.0    2.4  2  Arylesterase  Arylesterase


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.3   0.0   6.5e-78   3.9e-74       1     245 [.      14     254 ..      14     255 .. 0.98

  Alignments for each domain:
  == domain 1  score: 249.3 bits;  conditional E-value: 6.5e-78
         SGL   1 lgEGpvwdeeegaLlwvDilgqrihrldpatgketvldtpesvGaiaprkdgrlvvasksglalldlasgeletladeeedekpllrfNDgvvdpdGrl 99 
                 l+E+p+w e+e+aL+w Di++ +ihr+d ++g+++vl++pe+vG++a+r++g+++va++sg++l+d +    ++++d++++  +l+rfNDg  d+dGr+
  CTQ29402.1  14 LPECPTWSEAEQALYWADIMECEIHRYDIRSGEHQVLQFPEEVGCFALREKGGFIVALRSGIWLTDAHGLLRRKVCDNPSNP-ELARFNDGGTDRDGRF 111
                 79**********************************************999***************8888999999999777.**************** PP

         SGL 100 wfGtmgdeeakgeevgalyrldpdgklervlddltipNGlawspdgktlYlaDsltrkiwaydvdaeggklsnrrvfadlkkgegepDGlavDaeGnvw 198
                 ++Gt +   + +   + l+r+d d + ++++ d+  +NGla+s+d + +Y+ D+++  i++ ++d++g+  ++r+vf ++++geg pDG+a+D eG++w
  CTQ29402.1 112 YAGTFWGPGDYNG--ALLMRVDNDLQPKVIQCDIYGANGLAFSADRRWMYTSDTPNAVIYRTPLDEQGE-PGRREVFRRFQPGEGIPDGAAIDVEGCYW 207
                 ********99999..*************************************************98888.***************************** PP

         SGL 199 vAvwgggkvvrfdpdGklieeiklpakrvtscaFgGpdlrtLyitsa 245
                 +A+++g++++rf+p+G+ +e + +p++++t+++FgG+d++tLyit++
  CTQ29402.1 208 SAMFDGWRIARFSPQGEELESYPMPVRCPTMVCFGGADMKTLYITTT 254
                 *********************************************97 PP

>> Str_synth  Strictosidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.7     1e+04      69      85 ..      25      41 ..      20      44 .. 0.66
   2 ?   13.2   0.0   1.2e-05     0.074      39      83 ..     127     170 ..     110     176 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.7
   Str_synth 69 sfvlvcetamkrisryw 85
                + +  +++  + i+ry 
  CTQ29402.1 25 QALYWADIMECEIHRYD 41
                55566777778888885 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.2e-05
   Str_synth  39 llkydkstkvvkvlldkLyfanGialsedgsfvlvcetamkrisr 83 
                 l++ d+  +  kv+  ++y+anG+a s d+ ++  ++t+ + i r
  CTQ29402.1 127 LMRVDNDLQ-PKVIQCDIYGANGLAFSADRRWMYTSDTPNAVIYR 170
                 456666655.47**************************9999887 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.015        91      62      83 ..      21      42 ..      14      44 .. 0.86
   2 ?    7.3   0.0   0.00089       5.3      52      80 ..     142     170 ..     134     175 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.015
  Arylesterase 62 dadkkyiyvadilresihvmkk 83
                  +  ++ +y adi++ +ih+++ 
    CTQ29402.1 21 SEAEQALYWADIMECEIHRYDI 42
                  677899*************975 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00089
  Arylesterase  52 glssanGInidadkkyiyvadilresihv 80 
                    ++ anG+ ++ad++ +y +d  +  i++
    CTQ29402.1 142 DIYGANGLAFSADRRWMYTSDTPNAVIYR 170
                   5788****************999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       221  (0.0123264); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2424.30
//
Query:       CTQ29403.1  [L=373]
Description: fused chorismate mutase T; prephenate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-30  105.0   0.0    7.8e-30  103.7   0.0    1.6  2  PDH            Prephenate dehydrogenase
    1.3e-20   73.5   0.2    3.2e-20   72.3   0.1    1.7  2  CM_2           Chorismate mutase type II
     0.0028   18.2   1.8        1.5    9.4   1.3    3.5  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
     0.0047   16.5   0.0     0.0071   15.9   0.0    1.2  1  NmrA           NmrA-like family
  ------ inclusion threshold ------
      0.053   14.1   0.0         19    5.8   0.0    2.4  2  Rhodanese      Rhodanese-like domain


Domain annotation for each model (and alignments):
>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.46   1.7e+03      47      66 ..      60      79 ..      48      81 .. 0.79
   2 !  103.7   0.0   2.2e-33   7.8e-30      40     257 ..     137     344 ..     124     345 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.46
                SEEEE-S-GGGHHHHHHHHH CS
         PDH 47 divvlavPvevilevlkela 66
                + + l vP++ i++vl+ + 
  CTQ29403.1 60 EAAALGVPPDLIEDVLRRVM 79
                556799**********9875 PP

  == domain 2  score: 103.7 bits;  conditional E-value: 2.2e-33
                 GGGGCCGSEEEE-S-GGGHHHHHHHHHHHS-TT-EEEE--S--CHHHHHHHHHCC..GCEEEEEES---S-SSGGG--TTTTTT-EEEEEE-TTS-HHH CS
         PDH  40 ieavkeadivvlavPvevilevlkelaphlkedalitDvgsvKekvvreleellkegksfvgghPmaGteksGvdaareelfenavviLtPtektdkea 138
                  + v +a +v+++vP++++ e+++ l p l  d++++D++svK+++ +++ +  +    + g hPm+G+           ++ ++vv+ ++    ++ea
  CTQ29403.1 137 ADIVADAGMVIVSVPIHTTVETIARLPP-LPADCILVDLASVKAEPLQAMLAAHQ--GPVLGLHPMFGP--------DSGSLAKQVVVYCDGR--QPEA 222
                 4678999*********************.********************998888..89**********........889***********99..5578 PP

                 HHHHHHHHHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHCHHCCCCHHHHCGTCCHHHHH....CGGGS-HHHHHHHHHHTHHHHHHHHHHH CS
         PDH 139 lekvkelleevgarvilmspeeHDrvvavvshlphvvaialaatlkekkndekeirklasggfrdvt....RiaksnPelwadilleNkeavlealdkf 233
                  +   e ++  gar+  +s+ eHD+ +a+++ l h++ +a    l+e++++ +++  l+s+++r+      R+ +++P+l+adi++  ++  l  ++ +
  CTQ29403.1 223 YQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVRLEQLLALSSPIYRLELamvgRLFAQDPQLYADIIMSSEN-NLALIKRY 320
                 88888999999*****************************************************9766789***************9988.5679999* PP

                 HHHHHHHHHHHHTT-HHHHHHHHH CS
         PDH 234 ikelkklkelienedaeeLvellk 257
                  +   ++  l+e++d++ ++  ++
  CTQ29403.1 321 YQRFGEAIGLLEQGDKQAFIDSFR 344
                 ***************999988775 PP

>> CM_2  Chorismate mutase type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.1   8.8e-24   3.2e-20       1      74 [.       9      86 ..       9      87 .. 0.96
   2 ?   -3.8   0.0       4.7   1.7e+04      38      50 ..     219     231 ..     217     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 8.8e-24
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSGSS-HHHHHHHHHHHHHHH....S-HHHHHHHHHHHHHHHHHHH CS
        CM_2  1 RkeIdeiDdeileLLaeRaelakevgeyKkeeglpvydpeReaevlerleega....ldeeaierifreiisasralq 74
                R++Ide+D+ +l LLa+R+el+ evge+K++ glp+y peRe ++l+ ++e+a    ++++ ie+++r ++++s + +
  CTQ29403.1  9 RDQIDEVDKALLSLLAKRLELVAEVGEVKSQYGLPIYVPERESAMLASRREEAaalgVPPDLIEDVLRRVMRESYSSE 86
                99*************************************************666788*****************9877 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.7
                 -HHHHHHHHHHHH CS
        CM_2  38 dpeReaevlerle 50 
                 +pe  +++le+++
  CTQ29403.1 219 QPEAYQWFLEQIQ 231
                 7888899999886 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0       0.1   3.7e+02      55      84 ..      52      81 ..      28      87 .. 0.77
   2 !    9.4   1.3   0.00043       1.5      54      94 ..     135     174 ..     100     176 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.1
                   HHHHHHH-SEEEE-S-HHHHHHHHHHCGHH CS
  F420_oxidored 55 neeaaeeadvvvlavkpedveevlselakd 84
                   +  a ++ +   l v+p  +e+vl+ ++++
     CTQ29403.1 52 AMLASRREEAAALGVPPDLIEDVLRRVMRE 81
                   445566888999************999665 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00043
                    CHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEEEE CS
  F420_oxidored  54 dneeaaeeadvvvlavkpedveevlselakdalkgklvisv 94 
                     +++ +++a +v+++v+ + + e+++ l + + ++ ++++ 
     CTQ29403.1 135 RAADIVADAGMVIVSVPIHTTVETIARL-PPLPADCILVDL 174
                    3567777788888888888888888888.788888888876 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     2e-06    0.0071       1      49 [.     101     149 ..     101     170 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-06
                 EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SHHHHHHHHSTTEEEE CS
        NmrA   1 IlviGaTGrqGksvvrallkaghkvralvRdtkselakslkeaGvelvk 49 
                 ++++G+ G++G+ + ++l+ +g++vr+l ++    +a+ +++aG ++v+
  CTQ29403.1 101 VVIVGGGGQMGRLFEKMLTLSGYQVRILEKNDWARAADIVADAGMVIVS 149
                 689*******************************************996 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0054        19      64      98 ..      96     129 ..      75     131 .. 0.76
   2 ?    5.7   0.0    0.0058        21      66      87 ..     208     228 ..     191     246 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0054
   Rhodanese  64 dnkktvvvycdgggraaaaaallkklGyknvsvld 98 
                  n ++vv+++ gg+  +  +++l+  G ++v++l+
  CTQ29403.1  96 PNLRPVVIVGGGGQMGRLFEKMLTLSG-YQVRILE 129
                 467889999988888777799***9**.79**997 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0058
   Rhodanese  66 kktvvvycdgggraaaaaallk 87 
                  k+vvvycdg++  +a +++l+
  CTQ29403.1 208 AKQVVVYCDGRQP-EAYQWFLE 228
                 689******9999.44455444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2930.05
//
Query:       CTQ29404.1  [L=356]
Description: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.2e-107  358.0   0.0   2.7e-107  357.7   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.7   0.0  1.5e-111  2.7e-107       8     274 ..      38     340 ..      26     341 .. 0.96

  Alignments for each domain:
  == domain 1  score: 357.7 bits;  conditional E-value: 1.5e-111
                   H......HHCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S.SSTTS-SHTTHHHTHHHHHHHHHHH......... CS
  DAHP_synth_1   8 a......adiliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKpRrstvgfkGlindpdlkilsrikkel......... 89 
                   a      +di++G+d rllv++GPCsi+dpeaa+eyA+r+k+l+++++d+l+++mr+yfeKp r+tvg+kGlindp+++++++++ +l         
    CTQ29404.1  38 AharqtiSDIIAGRDPRLLVVCGPCSIHDPEAAIEYARRFKALAAEVSDSLYLVMRVYFEKP-RTTVGWKGLINDPHMDGSFDVEGGLkiarrllve 133
                   044556689*****************************************************.9********************************* PP

                   ....T-EEEEEESSCCTHHHHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TT....HHHHHHHHHHHHHHHTTE.........EE--EEEE CS
  DAHP_synth_1  90 ....glpiatevldpisvqyladvvdiiqiGArttesqdllelasglskpvglKngtd....vaidemkaaaekilflgv.........etkgiilc 169
                       glp+ate+ldp+s+qyl d++++ +iGArttesq+++e+asgls+pvg+Kngtd    +ai++m+aaa ++ f+g+         +t+g++++
    CTQ29404.1 134 lvnmGLPLATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGLSMPVGFKNGTDgslaTAINAMRAAAMPHRFVGInqagqvcllQTQGNPNG 230
                   ************************************************************************************************* PP

                   EEEEEESTSSSSSCHCHHHHHHHHHHCTSS.-EEEESCHHHTTCGGGGHHHHHHHHHHHHHTT...ESEEEEEBBSSCCC-SST.GGGGBBCTCBHH CS
  DAHP_synth_1 170 erglrggkktnrdvedvaavkilkeetgkl.pvmvDvsHansrkdykrqkkvlklakaaiaaG...iaGvmiEshlnpgkalsd.gkqalkygkset 261
                   +++lrggk++n+  edva++++++ ++g   ++mvD+sH+ns+kd++rq+ v++++ a+i++G   i+G+miEs++++g+++s+  ++a+kyg+s+t
    CTQ29404.1 231 HVILRGGKAPNYGPEDVAKCEKEMAQAGLKpSLMVDCSHGNSNKDFRRQPAVAESVVAQIKDGnrsIIGLMIESNIHEGNQSSEqPREAMKYGVSVT 327
                   **********************999997557*****************************************************7899********* PP

                   HHHHHHHHHHHHH CS
  DAHP_synth_1 262 dacilkeltelll 274
                   daci++e+te+ll
    CTQ29404.1 328 DACISWETTEALL 340
                   *********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2714.35
//
Query:       CTQ29405.1  [L=169]
Description: hypothetical protein CH1034_280010 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-30  106.8   0.0    1.2e-30  106.6   0.0    1.0  1  DUF4154   YfiR/HmsC-like


Domain annotation for each model (and alignments):
>> DUF4154  YfiR/HmsC-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.0   6.9e-35   1.2e-30       4     143 .]      29     164 ..      26     164 .. 0.91

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 6.9e-35
                 HHHHHHHHHTTEE-SS--SS..EEEEEES-BSSTHHHHT-EE-TTS..-EEEEEEE-TT-TTHH-SEEEE-S--HHHHHHHHHHHTTS--EEEESSTSG CS
     DUF4154   4 kaaflynfakyteWpeeagssplrlcvlgddpfaaaleallegkkvrgrpievrrlddsseaeechvlyigesearelaailkalagkpvLtvsdgegf 102
                   a++ +++ yt+Wp+ +g+   +lc++ +++f+ +l++  +   +  +p+ vr+ +++ +   c+ +y+g+++++e++++++++  +p+L++++++++
  CTQ29405.1  29 VRAIVSGIVTYTRWPSLTGA--PKLCIFASSRFTHSLAH-EDPDALPYQPVIVRNREEALK-TTCDGFYFGSESPTEQSELTRRYGPRPLLLIAEQNTD 123
                 679****************9..8**************99.666666666666665555554.46*********************************** PP

                 GSSS-SEEEEESSSSEEEEEEHHHHHHSSSEE-GGGGHHHH CS
     DUF4154 103 aeqggminLvredgrlrfeiNldaarraglkisskLLrLAr 143
                 ++ g++++L+++d+r+rf++Nld + ++g+++++++L+LAr
  CTQ29405.1 124 CSIGSAFCLIINDDRVRFSVNLDVLTHSGVRVNPDVLMLAR 164
                 ****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1388.28
//
Query:       CTQ29406.1  [L=407]
Description: putative diguanylate cyclase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-44  149.9   0.2    8.6e-44  149.1   0.2    1.4  1  GGDEF     Diguanylate cyclase, GGDEF domain
    7.8e-31  106.4   0.1    2.5e-30  104.7   0.1    1.9  1  CHASE8    Periplasmic sensor domain
  ------ inclusion threshold ------
      0.075   11.0   0.8       0.54    8.2   0.1    2.0  2  Prominin  Prominin
       0.12   12.4   0.0       0.32   11.0   0.0    1.7  1  GAPES3    Gammaproteobacterial periplasmic sensor domain


Domain annotation for each model (and alignments):
>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.1   0.2   1.9e-47   8.6e-44       2     158 ..     249     401 ..     248     404 .. 0.96

  Alignments for each domain:
  == domain 1  score: 149.1 bits;  conditional E-value: 1.9e-47
                 SB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHHH CS
       GGDEF   2 ahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaaela 100
                  hD+lTgL+NR+++++ l++++q+  + ++  a+l+ld dnFk ind++Gh++GD+vL+eva+rL +++ k++l+ RlggdeFa+ll e++se  ae++
  CTQ29406.1 249 LHDPLTGLANRAAFRNALAELMQNEVD-HQTSALLFLDGDNFKLINDNWGHAAGDKVLMEVASRLMTFAGKRHLAWRLGGDEFAVLLREVRSE--AEVQ 344
                 69***********************66.79999**********************************************************98..**** PP

                 HHHHHHHHCS-EEET.TCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCT CS
       GGDEF 101 erirrllaklkepve.lsgeelyvtisiGialappeegedleellkeAdealyeaKkag 158
                  ++++l +++  p++ ++g++ ++++s+G+ala   e+ ++e+l + Ad+++y+ K+++
  CTQ29406.1 345 ALCQALTEQFLPPFNlHNGHSATLSLSVGYALAW--EHATAESLQELADQNMYRMKNQR 401
                 **************6378999************6..999*****************996 PP

>> CHASE8  Periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   0.1   5.5e-34   2.5e-30       1     101 [.      44     144 ..      44     145 .. 0.99

  Alignments for each domain:
  == domain 1  score: 104.7 bits;  conditional E-value: 5.5e-34
      CHASE8   1 lkeyaqqnlellarilaenveAAlvFeDaaaAreiLaaLkaepeiaaaavydaegkllaeyaresseakeeleallaslllpepvespilhdgeriGtv 99 
                 lk+yaq+nlel+a+++++++eAAlvF+D+aaA+e+La+L+++++i++a v++ + + +a++++e  ++ke+++ l++++l+pep+ +pi+h+g++iG++
  CTQ29406.1  44 LKQYAQKNLELTAATMGRSLEAALVFGDSAAAEETLASLGKQGQISQAIVLNGQMQHFAAWRHEPLANKEQVSGLISKWLFPEPTVQPIWHQGKQIGEL 142
                 69************************************************************************************************* PP

      CHASE8 100 vl 101
                 +l
  CTQ29406.1 143 RL 144
                 98 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.016        72     135     185 ..      16      66 ..       7      76 .. 0.83
   2 ?    8.2   0.1   0.00012      0.54     141     237 ..     154     252 ..     148     280 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.016
    Prominin 135 dacrRktlgvllllltlllliGviiaFvtNkaldegleesketvkrgledl 185
                   +r ++++v++ ++++ ll++    F+  ++ +++le +  t+ r+le +
  CTQ29406.1  16 ALRRISVISVVISMTLVWLLLSTASIFTLKQYAQKNLELTAATMGRSLEAA 66 
                 3445567899999*******************************9998765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00012
    Prominin 141 tlgvllllltlllliGviiaFvtNkaldegleesketvkrgledl...rtflkdvpqh.id..hvlvqnyeelekhvsddLddagkhlgldladtlesn 233
                  lg+++l+lt  +l+  +ia + ++ l++g+  + +++++ ++d+   r f + vp++ i+  h++ q+++ l      +++d +++l  + a+ l+s+
  CTQ29406.1 154 FLGISILVLTGSILLASFIALLLTHSLHRGIVAALQSITEVVHDIrenRHFSRRVPEErIEefHLFAQDFNSLL----GEMEDWQRQLQAKNAQLLRSS 248
                 6899***************************9988888888887722257999999863544478888887654....445555555555555555554 PP

    Prominin 234 vlpa 237
                 +   
  CTQ29406.1 249 LHDP 252
                 4444 PP

>> GAPES3  Gammaproteobacterial periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.1e-05      0.32       6      58 ..      47      98 ..      43     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.1e-05
      GAPES3  6 dyakqleniavsvrqpLsdalLkadleeakeilislkasgilsradvvlPedv 58
                  +k le  a ++ ++L +al+  d  +a+e+l sl + g +s+a+v+   ++
  CTQ29406.1 47 YAQKNLELTAATMGRSLEAALVFGDSAAAEETLASLGKQGQISQAIVLNG-QM 98
                456789999************************************98754.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1008  (0.0562218); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3201.56
//
Query:       CTQ29407.1  [L=160]
Description: putative outer membrane lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-19   68.8   0.1    5.4e-19   68.4   0.1    1.2  1  OmpA      OmpA family
  ------ inclusion threshold ------
       0.12   12.9   0.1       0.26   11.9   0.1    1.6  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s
        1.1    9.5   4.7       0.22   11.7   1.1    1.7  2  MLTD_N    MltD lipid attachment motif


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.1   9.1e-23   5.4e-19       1      95 []      55     151 ..      55     151 .. 0.95

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 9.1e-23
                 .B-TTS--B-GGGHHHHHHHHHHHHS-S--.EEEEE---S---HHHHHHHHHHHHHHHHHHHHH.TTSSGGGEEEEE-TT--------------EE. CS
        OmpA   1 yFapgsseLtpkaksaldkiaellkkpeqk.itveGhtdaagseernweLSqkRAeaVanylqn.egvppsrisvsgyGaerpitanntaekkarnr 95 
                 +F+ ++++L+p +++++ ++a+ l  +     ++eGhtd+ g +++n++LS kRA++Va+++ +   vp+s++ +sg G++ pi++n+ta+++a+nr
  CTQ29407.1  55 LFDKNDYRLRPDSRQQITTMASRLAATGIThSRLEGHTDNYGEDSYNEALSLKRANSVADAWAEgAHVPRSNLVTSGLGKKYPIASNDTAAGRAENR 151
                 5************************444335*********************************999****************************98 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   4.3e-05      0.26       7      18 .]       9      20 ..       3      20 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.3e-05
      LPAM_1  7 algalllLsGCs 18
                al a++lL+GC+
  CTQ29407.1  9 ALMAAALLTGCQ 20
                677999*****8 PP

>> MLTD_N  MltD lipid attachment motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.1   3.6e-05      0.22      22      33 ..       9      20 ..       6      21 .. 0.91
   2 ?   -2.7   0.1       1.2   6.9e+03       9      21 ..      67      79 ..      63      80 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.6e-05
      MLTD_N 22 alaaaalLaGCQ 33
                al+aaalL GCQ
  CTQ29407.1  9 ALMAAALLTGCQ 20
                89********** PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
      MLTD_N  9 svkdALtRavqis 21
                s  +  t+a + +
  CTQ29407.1 67 SRQQITTMASRLA 79
                5556667876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1188.91
//
Query:       CTQ29408.1  [L=456]
Description: putative iron-regulated membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-58  196.4  14.9    1.3e-57  195.7  14.9    1.3  1  PepSY_TM  PepSY-associated TM region
  ------ inclusion threshold ------
        0.1   12.8   1.7       0.17   12.1   0.1    2.3  2  DUF423    Protein of unknown function (DUF423)


Domain annotation for each model (and alignments):
>> PepSY_TM  PepSY-associated TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.7  14.9   1.5e-61   1.3e-57       1     288 []      15     386 ..      15     386 .. 0.85

  Alignments for each domain:
  == domain 1  score: 195.7 bits;  conditional E-value: 1.5e-61
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxx RF
    PepSY_TM   1 lrlHlwlGLivglfllvlalTGallvfkpeieawlnpellvvapaaaaallaaeaaaaaaaaaaaaaaaaatavvrtaa.................gek 82 
                 +rlH+++GL++g+f++v+alTG+l+v  p++e+wl+++ l+  +++++++l+    a+ a+a++a +++ +  +vr+a+                 +e+
  CTQ29408.1  15 RRLHFYIGLFIGPFIFVAALTGTLYVATPQLENWLYHDALHGLAEGTPQPLS----AQIAVAEEATQGNLRLLAVRPAPalgettrimfadpglgeSES 109
                 69************************************************85....5666666666666666666666688888888899999999999 PP

                 xxxxxxxxxxxxxxxx..xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM  83 rsvfvdpytgevlger..sgesa.safaeflrrlHrglllgkpvGrllvglaallllvllvsGlilwwprrkkkrfftfrpkkgrrfwldlHnvlGvwl 178
                 r++fvdp   +v g++  +g+s+  +++++++  Hr+lllg+  Grl+++laa++++v+++ G+ lw  +r k+     r ++  +  + lH +lG+ l
  CTQ29408.1 110 RAIFVDPIALRVKGDMtvYGTSGiLPLRQWIDYAHRSLLLGDS-GRLYSELAASWMWVAALGGIALWAMTRPKR-----RLNNALQNHRRLHVTLGWGL 202
                 999999999999999976444447*******************.***********************7776663.....4444366788********** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxx............................... RF
    PepSY_TM 179 lpfllllalTGlvwslaavlgaavkalvseg.................aaaaaaaaaaaaaaaaaaaa............................... 229
                 l+++ll+++TGl+ws  +++g++v ++++++                 +++++a ++ +a+a+a+  +                               
  CTQ29408.1 203 LVGMLLFSATGLTWS--QWAGGNVDKMRAAFgwltpqvntqlhgempmTHDPHAGHHMDAMAMAQ--Hqpalqlaqfdqalaaarqaglnasrleirpp 297
                 **************9..888999999999889999888887777665523333333333333333..144789999999******************** PP

                 ...................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    PepSY_TM 230 ...................................edladaslgdqslgakllewlypLHfGtffGlplrillfllglalaalivtGlvlWlkr 288
                                                    +++ad++l+     akl++w++++H+G +fGl++++ll+ +g al++ i+ G++lW+ r
  CTQ29408.1 298 vsddrawtvneidrrwptqvdavaidgatmqvvdrTRFADFPLM-----AKLTRWGVDFHMGILFGLANQLLLVGFGCALCVTIGVGYRLWWIR 386
                 *****************************866666666666666.....*******************************************87 PP

>> DUF423  Protein of unknown function (DUF423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.9e-05      0.17      24      70 ..     160     214 ..     151     237 .. 0.69
   2 ?   -2.9   0.2      0.93   8.4e+03      59      63 ..     420     424 ..     398     449 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.9e-05
      DUF423  24 avqYqlyhalallavalla........skaaasrllklagllflaGivlFSgsly 70 
                 a++   + al+ +a+ +++        + + ++rl+ + g+ +l+G++lFS +  
  CTQ29408.1 160 AASWMWVAALGGIALWAMTrpkrrlnnALQNHRRLHVTLGWGLLVGMLLFSATGL 214
                 555666666666666555588888886556777888888************8754 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.93
      DUF423  59 laGiv 63 
                 ++G++
  CTQ29408.1 420 ALGLA 424
                 33322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3414.56
//
Query:       CTQ29409.1  [L=152]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-18   65.5  14.7    1.5e-17   64.3  14.7    1.5  1  DUF2946         Protein of unknown function (DUF2946)
  ------ inclusion threshold ------
      0.033   13.8   0.2       0.46   10.1   0.0    2.0  2  Virul_fac_BrkB  Virulence factor BrkB


Domain annotation for each model (and alignments):
>> DUF2946  Protein of unknown function (DUF2946)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3  14.7   1.7e-21   1.5e-17       1     115 []      16     145 ..      16     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 1.7e-21
     DUF2946   1 awlallAvllavlaPavsqaaaaaaaasllagaicsadgs.................aysaaytaagagspasamdseaCgyCsllaagphlmpslsas 82 
                 awlallA+ll+v+aP++s+   + ++++++a+++++++++                 +++++++a + g++   ++ eaCgyC+lla++p+l  +l ++
  CTQ29409.1  16 AWLALLAILLIVVAPLISV---SLQKDPMSAMPGMHHAMMmdsssanmaqmpghkmaMMHSTDGATHTGHEMPLDHAEACGYCVLLAHVPGLLFALALF 111
                 8******************...88888888888888888888899999999999*96666666666666666677777********************* PP

     DUF2946  83 lleaaesasaaaaargaapalpallpaar.RAPP 115
                 ++ +++ ++ ++ + +  +++ + +  +  RAPP
  CTQ29409.1 112 VAMLLRRIRLPVSRPVLKHWHYFPWLYPEtRAPP 145
                 ***********9998777766554444446***9 PP

>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.015   1.3e+02     116     134 ..      17      33 ..       4      59 .. 0.59
   2 ?   10.1   0.0   5.1e-05      0.46       7      34 ..      87     115 ..      83     133 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.015
  Virul_fac_BrkB 116 llllllllvllllslvlsv 134
                     +l+  ll++ll++++ l++
      CTQ29409.1  17 WLA--LLAILLIVVAPLIS 33 
                     222..22222333332222 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 5.1e-05
  Virul_fac_BrkB   7 llAaalayytllSlfPlllvllavlgl.l 34 
                     + A a+ y +ll+ +P ll++la++ + l
      CTQ29409.1  87 DHAEACGYCVLLAHVPGLLFALALFVAmL 115
                     579999******************95533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1145.02
//
Query:       CTQ29410.1  [L=115]
Description: 50S ribosomal protein L19 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-49  167.0   3.7    1.2e-49  166.9   3.7    1.0  1  Ribosomal_L19  Ribosomal protein L19
  ------ inclusion threshold ------
      0.098   13.1   0.0       0.14   12.6   0.0    1.3  1  MG2            MG2 domain


Domain annotation for each model (and alignments):
>> Ribosomal_L19  Ribosomal protein L19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.9   3.7   1.3e-53   1.2e-49       1     111 []       3     113 ..       3     113 .. 0.99

  Alignments for each domain:
  == domain 1  score: 166.9 bits;  conditional E-value: 1.3e-53
  Ribosomal_L19   1 nlikeiekeqlkkdlpefkvGdtvkVkvkikegkkeRiqafeGvviarkgkgisetftvRkisegvgvervfplhspkiekievvrrgkvrrakLy 96 
                    n+ik++e+eq+k+d+p+f++Gdtv+Vkv ++eg+k+R+qafeGvvia +++g+++ ftvRkis+g+gvervf++hsp +++i v rrg vr+akLy
     CTQ29410.1   3 NIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIAVKRRGAVRKAKLY 98 
                    689********************************************************************************************* PP

  Ribosomal_L19  97 YLrelkgkaarikek 111
                    YLre++gk+arike+
     CTQ29410.1  99 YLRERTGKSARIKER 113
                    *************96 PP

>> MG2  MG2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.6e-05      0.14      11      52 ..      20      62 ..      14      80 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
                E-TT-EEEEEEEEES.TTCSB---EEEEEEEE-TTSSEEEEEE CS
         MG2 11 YrPgetVslkallrd.etlqglaklplkltirdpdgkevkelp 52
                +rPg+tV++k+ + + ++ +  a+  + + ir+ +    ++ +
  CTQ29410.1 20 FRPGDTVEVKVWVVEgSKKRLQAFEGVVIAIRNRGLHSAFTVR 62
                8************986444555556688888877766655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 919.96
//
Query:       CTQ29411.1  [L=255]
Description: tRNA (guanine-1-)-methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-72  241.6   0.0    6.5e-72  241.3   0.0    1.1  1  tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase


Domain annotation for each model (and alignments):
>> tRNA_m1G_MT  tRNA (Guanine-1)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.3   0.0   3.6e-76   6.5e-72       2     195 .]      23     221 ..      22     221 .. 0.98

  Alignments for each domain:
  == domain 1  score: 241.3 bits;  conditional E-value: 3.6e-76
                  GGSHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEETSSHHHHHHHHHHHCCGH..HC.GG-TTEEEESSCGGHHHHCCCHHHCGGGEEEEETTTSSBEC CS
  tRNA_m1G_MT   2 kkasekelvslevqllrdytanrrntvddelygggagmvlkaepelealesv..nt.ekwkvilltptGkkftqelaeeLsekeklvylcgdyegvde 96 
                  ++a +++l+s+e++ +rd+t++r++tvdd++yggg+gm ++++p  +a++++  ++ e+ kvi+l+p+G+k++q++++eL++++kl+++cg+yeg+de
   CTQ29411.1  23 GRAVKNGLLSIESWSPRDFTHDRHRTVDDRPYGGGPGMLMMVQPLRDAIHAAkaAAgEGAKVIYLSPQGRKLDQAGVSELATNQKLILVCGRYEGIDE 120
                  799************************************************9752269**************************************** PP

                  CGGTTSSE.EEEEESSSSTTCSTTHHHHHHHHHHHHTTTC..EEB-S-CCC...CHCTS..CTTSEHHTEHHHHHHHHHCCCTTTHHHHHHHHHHHSC CS
  tRNA_m1G_MT  97 rvdddkvd.eysIGdfVlkggekgalvlidavkrllaGvl.ntaslpedsfsnrllekpnytrpltlrglkVpeiLlsgnhakienWrlkealertvp 192
                  rv+++ +d e+sIGd+Vl+gge++a++lid+v+r ++Gvl ++as +edsf+++ll++p+ytrp+ l+ ++Vp++Llsgnha+i++Wrlk++l rt+ 
   CTQ29411.1 121 RVIQTEIDeEWSIGDYVLSGGELPAMTLIDSVSRFIPGVLgHEASATEDSFADGLLDCPHYTRPEVLEEMEVPPVLLSGNHAEIRRWRLKQSLGRTWL 218
                  *******99***************************************************************************************** PP

                  SXS CS
  tRNA_m1G_MT 193 rRk 195
                  rR+
   CTQ29411.1 219 RRP 221
                  **7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1874.99
//
Query:       CTQ29412.1  [L=182]
Description: 16S rRNA processing protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-26   91.7   0.0    3.7e-26   91.2   0.0    1.3  1  RimM      RimM N-terminal domain
    9.5e-10   38.4   0.5    1.9e-09   37.5   0.5    1.5  1  PRC       PRC-barrel domain
  ------ inclusion threshold ------
       0.17   11.9   0.0       0.28   11.2   0.0    1.4  1  DUF2846   Protein of unknown function (DUF2846)


Domain annotation for each model (and alignments):
>> RimM  RimM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0   6.1e-30   3.7e-26       2      83 ..      16      96 ..      15      97 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 6.1e-30
                EEEEEEEETTTTEEEEEE-SSSGGGGGGSSSEEEE.ETTEEEEE-EEEEEEETTEEEEEETT--SHHHHHTTTT-EEEEETT CS
        RimM  2 vGkIvgahGlkGevkVkpftdfpealfkygrvlleakkgetreltvesvrvhkkgvivklegvddrdaAealkgaelfvprs 83
                +Gk ++++G++G+++V++ t+++e++f+y+++l++ k g+++ +++es+r+h++++i+kl+gvddrdaA  l+++e+ v+ s
  CTQ29412.1 16 LGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWLIQ-KAGQWQVVELESWRHHNQDIIIKLKGVDDRDAANLLTNCEIIVDSS 96
                8**********************************.9******************************************987 PP

>> PRC  PRC-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.5   3.2e-13   1.9e-09       2      73 ..     104     177 ..     103     181 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 3.2e-13
                 EECCS---TT-EEEETTSSEEEEEEEEEEETTTTEEEEEEEEETTT.....-EEEEEGG......CEECCCTEEEET CS
         PRC   2 defrasdliGkeVytedGeklGkVkDvvidekegrvralvvsvggflgigekevliPfd.....lavkigkdriivd 73 
                 + ++  dl G++V+t++G  lGkV D+ +++++++v+ ++ + +  +  g ke l+Pf      + v++ +++i vd
  CTQ29412.1 104 GDYYWKDLMGCQVVTTEGYSLGKVIDM-METGSNDVLVIKANLKDAF--GIKERLVPFLdgqviKKVDLTTRTIEVD 177
                 57899*********************9.***************9865..699*******999999999999988887 PP

>> DUF2846  Protein of unknown function (DUF2846)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.8e-05      0.28      21      51 ..      86     116 ..      78     150 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.8e-05
     DUF2846  21 aeapdvfvngkkigelankeYfvaevepGey 51 
                 +  +++ v+ +++ el+++ Y+++++++ + 
  CTQ29412.1  86 LTNCEIIVDSSQLPELEEGDYYWKDLMGCQV 116
                 67899*********************97653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1341.62
//
Query:       CTQ29413.1  [L=82]
Description: 30S ribosomal protein S16 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-24   86.0   0.1    1.6e-24   85.7   0.1    1.1  1  Ribosomal_S16  Ribosomal protein S16
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.13   12.1   0.0    1.1  1  AAA_26         AAA domain


Domain annotation for each model (and alignments):
>> Ribosomal_S16  Ribosomal protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.1   1.7e-28   1.6e-24       1      62 []       8      68 ..       8      68 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 1.7e-28
                   EESCTTCEEEEEEEEETTSSTTSSESEEEEEEETTTTSSTS.SEEE-HHHHHHHHHTTEEEE CS
  Ribosomal_S16  1 RfGrknrPfYrivvadsrkprdgrpiEklGtYdPlakkkekkevelneerikyWlgvGAqpt 62
                   R+G+k+rPfY++vv+dsr++r+gr+iE++G+++P+a+ +e+ e +l+ +ri +W+g+GA ++
     CTQ29413.1  8 RHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIANGAEE-ETRLDLDRIAHWVGQGATVS 68
                   9*********************************9988887.5****************987 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.4e-05      0.13      30      72 ..      34      78 ..      27      82 .] 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.4e-05
      AAA_26 30 vkvgyfKPiqtgieede..dselikellgldqtyelpeplalsap 72
                 +vg+f Pi++g ee++  d ++i++++g  +t +++ + +++a+
  CTQ29413.1 34 ERVGFFNPIANGAEEETrlDLDRIAHWVGQGATVSDRVAALIKAA 78
                58************988889999************9999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 678.73
//
Query:       CTQ29414.1  [L=454]
Description: 4.5S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-75  253.5   0.3    1.8e-75  252.9   0.3    1.3  1  SRP54          SRP54-type protein, GTPase domain
    7.1e-33  113.2   5.0    7.1e-33  113.2   5.0    3.4  4  SRP_SPB        Signal peptide binding domain
    7.5e-22   77.4   2.9    1.1e-21   76.9   0.2    2.7  3  SRP54_N        SRP54-type protein, helical bundle domain
    3.4e-07   30.4   0.0    1.5e-06   28.3   0.0    2.3  2  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain
    3.5e-05   23.2   0.1    7.4e-05   22.1   0.1    1.5  1  Zeta_toxin     Zeta toxin
    0.00035   20.3   0.8    0.00096   18.9   0.5    2.0  2  AAA_30         AAA domain
     0.0013   18.3   1.0     0.0068   16.0   1.0    2.1  1  cobW           CobW/HypB/UreG, nucleotide-binding domain
     0.0015   18.5   0.4      0.012   15.5   0.1    2.2  2  AAA_31         AAA domain
     0.0052   17.1   0.0      0.017   15.4   0.0    1.8  1  AAA_22         AAA domain
       0.01   15.7   0.1      0.018   14.9   0.1    1.4  1  Helicase_RecD  Helicase
  ------ inclusion threshold ------
      0.011   15.9   0.0      0.022   14.9   0.0    1.6  1  AAA_33         AAA domain
      0.017   15.2   0.0        5.5    7.2   0.0    2.7  2  Peptidase_C23  Carlavirus endopeptidase
       0.02   14.7   0.0      0.041   13.6   0.0    1.5  1  AAA_24         AAA domain
      0.032   14.1   0.1       0.15   12.0   0.0    2.1  2  APS_kinase     Adenylylsulphate kinase
       0.12   12.8   0.1       0.34   11.3   0.1    1.8  1  AAA_16         AAA ATPase domain
       0.21   11.7   1.0        1.4    9.0   0.5    2.6  2  MMR_HSR1       50S ribosome-binding GTPase
       0.31   10.4   1.9       0.76    9.2   0.1    2.1  2  KTI12          Chromatin associated protein KTI12


Domain annotation for each model (and alignments):
>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.9   0.3   1.7e-78   1.8e-75       1     196 []     100     296 ..     100     296 .. 0.99

  Alignments for each domain:
  == domain 1  score: 252.9 bits;  conditional E-value: 1.7e-78
                 SEEEEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE--SSTTH CS
       SRP54   1 pnvillvGlqGaGKTttlaKLaallkke.gkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakeavekakeekidvvlvDTaGrlqnd 98 
                 p v+l++GlqGaGKTt+++KL + l+++ +kkvl+v+aD++R+aA++QL+tlae++gv+++ ++ +++p++++++a+++ak + +dv+lvDTaGrl+ d
  CTQ29414.1 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKhKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVD 198
                 579***********************99899******************************************************************** PP

                 HHHHHHHHHHHHHHSSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEEE-SSSTTGEEE--HHHHHHHHHT CS
       SRP54  99 kelmeelkkikkvvkpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfigvGekiedleefdperlvsrllg 196
                 +++m+e+k+++ +++p e+l+v+da+tgq+a+++akaF+ea+ +tgv+ltk+Dgda+gGaalsi++ +++Pikf+gvGek+e le+f+p+r++sr+lg
  CTQ29414.1 199 EAMMDEIKHVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRILG 296
                 ************************************************************************************************95 PP

>> SRP_SPB  Signal peptide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       1.3   1.4e+03      46      67 ..     216     237 ..     197     245 .. 0.78
   2 ?   -2.6   0.0       8.6     9e+03      13      36 ..     293     316 ..     290     325 .. 0.62
   3 !  113.2   5.0   6.7e-36   7.1e-33       2      99 .]     329     427 ..     328     427 .. 0.94
   4 ?   -1.9   6.2         5   5.2e+03      13      33 ..     426     446 ..     424     450 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.3
                 HHHHHHTTSBHHHHHSGCG-.. CS
     SRP_SPB  46 rieaiidSMTkeErdspekllk 67 
                 ++ +++d+MT +  +++ k ++
  CTQ29414.1 216 ETLFVVDAMTGQDAANTAKAFN 237
                 466889****999999888776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.6
                 HHHCCCCCCHHHHCCC.....H.. CS
     SRP_SPB  13 qikkmGplskllsmiPgmsaeaka 36 
                 +i  mG++ +l++ i    + a+a
  CTQ29414.1 293 RILGMGDVLSLIEDIESKVDRAQA 316
                 577888888888888764444333 PP

  == domain 3  score: 113.2 bits;  conditional E-value: 6.7e-36
                 SCTHHHHHHHHHHHCCCCCCHHHHCCC.......H...CCCCCHHHHHHHHHTTSBHHHHHSGCG-..HHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH CS
     SRP_SPB   2 ftlrdlleqlqqikkmGplskllsmiPgmsae..akaeeeaekklkrieaiidSMTkeErdspekllkesRkrRiArGsGtsvqevnellkqfeqmkkm 98 
                 f+l d+leql+q+k+mG++ +l++++Pgm++   + + ++++k l r+eaii+SMT +Er++pe ++k sRkrRiA+G+G++vq+vn+llkqf++m++m
  CTQ29414.1 329 FDLTDFLEQLRQMKNMGGMASLMGKLPGMGQIpdNVKAQMDDKVLVRMEAIINSMTLKERAKPE-IIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRM 426
                 9***************************9988874445778999********************.9999****************************** PP

                 T CS
     SRP_SPB  99 m 99 
                 m
  CTQ29414.1 427 M 427
                 9 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 5
                 HHHCCCCCCHHHHCCC..... CS
     SRP_SPB  13 qikkmGplskllsmiPgmsae 33 
                 ++kkm +   +++m+ gm+ +
  CTQ29414.1 426 MMKKMKSKGGMMKMMRGMKGM 446
                 677777777777777776654 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.2     1e-24   1.1e-21       1      75 []       5      82 ..       5      82 .. 0.96
   2 ?   -1.1   0.0       2.2   2.3e+03      37      57 ..     162     182 ..     136     207 .. 0.72
   3 ?   -2.5   0.0       5.7     6e+03      45      45 ..     317     317 ..     300     341 .. 0.53

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 1e-24
                HHHHHHHHHHHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTS....S-HHHHHHHHHHHHH CS
     SRP54_N  1 LgkklnsalkklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekk....lkpkqqvkkivkdeL 75
                L+++l+++l+++sg+++++e++++++l+e+++aLleaDV+++vv+++i++vk++avg  +    l+p+q+++kiv++eL
  CTQ29414.1  5 LTDRLSRTLRNISGRGRLTEDNIKDTLREVRMALLEADVALPVVRDFISRVKESAVG-HEvnksLTPGQEFVKIVRNEL 82
                799******************************************************.55488999***********98 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.2
                 TT--HHHHHHHHHHHHHHHHC CS
     SRP54_N  37 aDVgvkvvkklienvkkkavg 57 
                 +DVg k v+ + + +k+++++
  CTQ29414.1 162 SDVGQKPVDIVNAALKEAKLK 182
                 677777777666666666555 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 5.7
                 H CS
     SRP54_N  45 k 45 
                 +
  CTQ29414.1 317 E 317
                 1 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       8.6   9.1e+03      94     116 ..      33      56 ..      20      64 .. 0.56
   2 !   28.3   0.0   1.4e-09   1.5e-06       9      89 ..     110     255 ..     102     374 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8.6
                 HHHHHHHHHHCTS-EEE.EEE--C CS
                 xxxxxxxxxxxxxxxxx.xxxxxx RF
        CbiA  94 kealeelkqrygvpvlg.viprde 116
                 +  ++ l+++ ++pv+  +i+r++
  CTQ29414.1  33 EVRMALLEADVALPVVRdFISRVK 56 
                 333444444446666555666655 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 1.4e-09
                 TSSHHHHHHHHHHHHHH.TT--EEEEEEEESSCCCCHHTTEB-HHHH.................................................... CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................... RF
        CbiA   9 GvGKTtlaanLaralar.rglrVllvDaDpqannlaileglendiep.................................................... 54 
                 G+GKTt + +L++ l + ++++Vl+v aD+ ++++   ++le   e+                                                    
  CTQ29414.1 110 GAGKTTSVGKLGKFLREkHKKKVLVVSADVYRPAAI--KQLETLAEQvgvdffpsdvgqkpvdivnaalkeaklkfydvllvdtagrlhvdeammdeik 206
                 9***************978**************974..666655555999************************************************* PP

                 ...............CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS... CS
                 ...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ...............dlkrllellealgkkkalllkiagvvlnrvdgene 89 
                                d+   ++ +++  k ++ +l + gvvl++vdg+++
  CTQ29414.1 207 hvhaainpvetlfvvDAMT-GQDAANTAKAFNEALPLTGVVLTKVDGDAR 255
                 *******999999995544.3333344444555599***********965 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1     7e-08   7.4e-05      12      58 ..      96     144 ..      87     210 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 7e-08
  Zeta_toxin  12 sqerPklillgGqpGAGKselaellkdele..rqgnvvrldpDdlRelh 58 
                 + + P+++l++G +GAGK++   +l + l+  ++++v+++++D +R+  
  CTQ29414.1  96 AAQPPAVVLMAGLQGAGKTTSVGKLGKFLRekHKKKVLVVSADVYRPAA 144
                 4578****************999888887776799***********864 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.5   9.1e-07   0.00096      14     110 ..      96     213 ..      87     248 .. 0.70
   2 ?   -2.5   0.0       3.3   3.5e+03      60      83 ..     400     423 ..     395     435 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9.1e-07
      AAA_30  14 ltsgdrvavltGpAGtGKttalkalreaweaa.ggrviglAptg...kaAkvLa...eelgi..........eastiakllkrlk....grarlepgtl 91 
                 ++++  v+++ G  G+GKtt++++l + ++++ +++v++++      +a k+L+   e++g+          + + ++  lk+ k    +   ++++  
  CTQ29414.1  96 AAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKhKKKVLVVSADVyrpAAIKQLEtlaEQVGVdffpsdvgqkPVDIVNAALKEAKlkfyDVLLVDTAGR 194
                 45555699*****************99999887899998876531113334444333677756665555556777777777777788885555666677 PP

      AAA_30  92 livDEagmvdtkqlaallk 110
                 l vDEa m  +k+++a ++
  CTQ29414.1 195 LHVDEAMMDEIKHVHAAIN 213
                 7777777766666666555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.3
      AAA_30  60 kvLaeelgieastiakllkrlkgr 83 
                 +++a+++g++ + +++llk+ +++
  CTQ29414.1 400 RRIAAGCGMQVQDVNRLLKQFDDM 423
                 567778888888888888887743 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.0   6.4e-06    0.0068       2     151 ..     102     251 ..     101     260 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.4e-06
                 EEEEEESTTCCHHHHHHHHH...CT--SS-EEEEESS-SSCHCCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHH..TT-SEEEEEECTTTT CS
        cobW   2 vtvltGflGsGKTtLlnhll...enraglklavivNefgevsiDaellretgveivelenGciCctlredllkelealeere..erldviliEttGlae 95 
                 v++++G  G+GKTt + +l    ++++++k+ v+  +++      + +++ ++ + ++     +  + ++ +  ++a +++   + +dv+l+ t G ++
  CTQ29414.1 102 VVLMAGLQGAGKTTSVGKLGkflREKHKKKVLVVSADVYR----PAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAklKFYDVLLVDTAGRLH 196
                 67899*********988876666****************5....3344444444555555556666555555555554444435579*********888 PP

                 HHHHHTT.SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HH CS
        cobW  96 Papvaft.eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtD 151
                   + ++   ++++++++   +++vvDa    ++  ++++ +++ l  +  +vl+K+D
  CTQ29414.1 197 VDEAMMDeIKHVHAAINPVETLFVVDAMTG-QDAANTAKAFNEALPLTG-VVLTKVD 251
                 88875565788889999999*******665.778888888888888776.5678888 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.2e-05     0.012      12      41 ..     110     140 ..     102     158 .. 0.87
   2 ?   -0.6   0.0       1.1   1.1e+03     106     129 ..     171     195 ..     155     203 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.2e-05
      AAA_31  12 GvGKTTtsvnlaaala.klgkkvLlvDlDpQ 41 
                 G GKTT++ +l+++l  k +kkvL+v +D  
  CTQ29414.1 110 GAGKTTSVGKLGKFLReKHKKKVLVVSADVY 140
                 89**************788899******975 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.1
      AAA_31 106 ilkellekvkde.YDyiiiDcpPsL 129
                 i++ +l++ k + YD+ ++D+   L
  CTQ29414.1 171 IVNAALKEAKLKfYDVLLVDTAGRL 195
                 56778888886669******98766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.6e-05     0.017       9     116 ..     104     209 ..      98     222 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.6e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav..ielliiDEaqhlr. 104
                 +  G  G+GKTt++ +l + l e  k++ +++ vv+ ++  +   k+l + l++++g++     +  +  ++ ++ al++++     +l++D a +l  
  CTQ29414.1 104 LMAGLQGAGKTTSVGKLGKFLRE--KHK-KKVLVVSADVYRPAAIKQL-ETLAEQVGVDFFP-SDVGQKPVDIVNAALKEAKLkfYDVLLVDTAGRLHv 197
                 567999**************943..332.2555555555555544444.7777777765555.566666666666666666666669**********55 PP

      AAA_22 105 seealeeLrsll 116
                  e+++ e+++ +
  CTQ29414.1 198 DEAMMDEIKHVH 209
                 499999998765 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.7e-05     0.018       5     133 ..     108     236 ..     103     241 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-05
  Helicase_RecD   5 dRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglke...eekkkkaekaelrvrkqrieyiapdellklkeqadllvvD 97 
                      G GK++ +G++ + l +++k+++lv++ +    +  +++l++  e++g++       +k  + ++ + ++ +++++    + ++      l vD
     CTQ29414.1 108 LQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA-IKQLETLAEQVGVDFfpsDVGQKPVDIVNAALKEAKLKFYDVLLVDTAG----RLHVD 198
                    479***********************99987554333.2333344466666663333333444445666679999999887766655....6**** PP

  Helicase_RecD  98 EAAaiplpllkkllekfkrvvlatTvhG..YEGtGrgf 133
                    EA + +++ +++ ++  +++++  ++ G   ++t ++f
     CTQ29414.1 199 EAMMDEIKHVHAAINPVETLFVVDAMTGqdAANTAKAF 236
                    **************999998887777663355666666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   2.1e-05     0.022       1      36 [.     102     143 ..     102     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.1e-05
      AAA_33   1 lvllvGlpGsGKstlaerl...lkklg...avllssdtlrrr 36 
                 +vl+ Gl+G+GK+t + +l   l++ +   + ++s d++r +
  CTQ29414.1 102 VVLMAGLQGAGKTTSVGKLgkfLREKHkkkVLVVSADVYRPA 143
                 89**************99977633333577889999997754 PP

>> Peptidase_C23  Carlavirus endopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.025        26      19      49 ..     306     336 ..     302     360 .. 0.80
   2 ?    7.2   0.0    0.0052       5.5      24      55 ..     385     421 ..     371     439 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.025
  Peptidase_C23  19 dilAvlekvaseelveevseGrGlsiedves 49 
                    di  ++++  +e+l  ++++G G+++ d   
     CTQ29414.1 306 DIESKVDRAQAEKLASKLKKGDGFDLTDFLE 336
                    7888999*******************99643 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0052
  Peptidase_C23  24 lekvaseelv.....eevseGrGlsiedvesvleild 55 
                    l+++a +e++     + +++G G++++dv+++l+ +d
     CTQ29414.1 385 LKERAKPEIIkgsrkRRIAAGCGMQVQDVNRLLKQFD 421
                    666666666522222689****************998 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.9e-05     0.041       4      83 ..     102     199 ..     100     239 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.9e-05
      AAA_24   4 kiliyGpsgiGKTtlakel........gpkplfidtekGlksldadkfpdieswedfldevvel...................aaeladyktlviDtid 75 
                  +l+ G +g+GKTt++ +l        ++k+l++  +       ++ ++   ++e++ ++v  +                   +a+l+ y++l +Dt++
  CTQ29414.1 102 VVLMAGLQGAGKTTSVGKLgkflrekhKKKVLVVSADV----YRPAAIK---QLETLAEQVGVDffpsdvgqkpvdivnaalkEAKLKFYDVLLVDTAG 193
                 68999**************7777777777777776665....3333333...33333333333355666888899999999*****************9 PP

      AAA_24  76 eleelcla 83 
                  l  ++++
  CTQ29414.1 194 RL--HVDE 199
                 87..3333 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.9   6.2e+03      54     104 ..      24      76 ..      17      85 .. 0.63
   2 ?   12.0   0.0   0.00014      0.15       2      49 ..     100     148 ..      99     154 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.9
                 HHHHHHHHHHHHHHHHHHHTT-EEEEE----SHHHH..HHHHHHHHCHTEEEE CS
  APS_kinase  54 edRkenirrvaevaklladaglivlvafisPyreeR..eaarelleealkfie 104
                 ed  +++ r + +a l ad +l v+  fis  +e+   +++ + l  +++f++
  CTQ29414.1  24 EDNIKDTLREVRMALLEADVALPVVRDFISRVKESAvgHEVNKSLTPGQEFVK 76 
                 56666666777777777777777777787776654311344444444555655 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00014
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT.--EEEEEHHHHTTTTTTT- CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekg.isvylLdGdnvRhgLnkdL 49 
                 ++vv+++Gl g+GK+t   +l k L+ek  ++v ++  d+ R    k+L
  CTQ29414.1 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHkKKVLVVSADVYRPAAIKQL 148
                 689**********************988757888888888887666665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00032      0.34      24      63 ..     100     142 ..      89     243 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00032
      AAA_16  24 pelvllsGesGvGKsslvrellralekd...ggiflrgkcdql 63 
                 p +vl  G +G GK++ v +l + l+++   ++++++++  + 
  CTQ29414.1 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKhkkKVLVVSADVYRP 142
                 4789999***********9999988888443344444333333 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.88   9.3e+02       2      14 ..     103     115 ..      19     136 .. 0.69
   2 ?    9.0   0.5    0.0014       1.4      43      98 ..     181     234 ..     102     249 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.88
                 EEEEESTTSSHHH CS
    MMR_HSR1   2 vaivGrpNvGKSt 14 
                 v+ +G   +GK+t
  CTQ29414.1 103 VLMAGLQGAGKTT 115
                 4455666666665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0014
                 ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHH CS
    MMR_HSR1  43 lkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeele 98 
                 lk  ++ lvDt+G ++ ++   ++ k+++a ++    l+vvda ++  ++  ++ +
  CTQ29414.1 181 LKFYDVLLVDTAGRLHVDEAMMDEIKHVHAAINPVETLFVVDAMTG--QDAANTAK 234
                 223559*******7763333336666677777767899***97733..22333333 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00072      0.76       3      41 ..     102     141 ..     100     154 .. 0.86
   2 ?    0.2   0.4      0.39   4.1e+02     195     259 ..     368     432 ..     359     440 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00072
                 EEEEE--TTSSHHHHHHHHHHHHHH.TT--EEEE-THHHH CS
       KTI12   3 LvvltGlPssGKstrakeLakalee.ekrsvvviddeslg 41 
                  v++ Gl  +GK+t + +L k l+e +k++v v++ + ++
  CTQ29414.1 102 VVLMAGLQGAGKTTSVGKLGKFLREkHKKKVLVVSADVYR 141
                 6999*******************99678889999988765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.39
                 HHHHHHHHHHHHHH....HTT--HHH.................HHHHHHHHHHHHHHHT.TSSS-- CS
       KTI12 195 Ldketseivkeileaqksavaidkltlpgsseslelpak.kltlaeLsrlrrqFvklnkaklenvd 259
                 +d ++   +++i++ ++ +++ +   + gs+ + +++a   ++++ ++rl +qF  ++++ +++ +
  CTQ29414.1 368 MDDKVLVRMEAIINSMTLKERAKPEIIKGSR-KRRIAAGcGMQVQDVNRLLKQFDDMQRMMKKMKS 432
                 5555555556666655544444444444444.4455555469999*********999996655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      686  (0.038262); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.38
# Mc/sec: 3590.99
//
Query:       CTQ29415.1  [L=263]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-43  148.9  18.8    1.6e-43  148.9  18.8    1.5  1  Cytochrom_C_asm  Cytochrome C assembly protein
  ------ inclusion threshold ------
      0.022   14.6   1.1      0.085   12.7   0.3    2.1  2  DUF1686          Protein of unknown function (DUF1686)


Domain annotation for each model (and alignments):
>> Cytochrom_C_asm  Cytochrome C assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.9  18.8   1.8e-47   1.6e-43       4     212 ..      36     261 ..      33     263 .] 0.97

  Alignments for each domain:
  == domain 1  score: 148.9 bits;  conditional E-value: 1.8e-47
  Cytochrom_C_asm   4 leesllllawilsllgllleylarklnlsllaavaliaalillgfalf....................lllaelqesadlnpalqspilmiHvp 77 
                      l + ++l++++++l   ++   ++++nlsll+ ++l++++i+++++++                    l +a++ +++ +++++++p++++H++
       CTQ29415.1  36 LSATIALICHAFALEARIFPGGESGQNLSLLNVGSLVSLMICTVMTIVasrnrgwlllpivyafalinLAFATFVPNEYITHLETTPGMLVHIG 129
                      678899****************************************999********************************************* PP

  Cytochrom_C_asm  78 lallsYatliigallsialliierqlkkkkklklsanlkllkqldrlsyriiliGfvlltigiilGsvWaeeaWGsywsWDpketaslitWlvf 171
                      l+l+sYatlii+al++++l +i++ql k+kkl +s+++++l++++r +++i+++G+vllt+++++G +++++++ s  +  +k+++s+i+W+v+
       CTQ29415.1 130 LSLFSYATLIIAALYALQLAWIDYQL-KNKKLAFSSEMPPLMSIERKMFHITQVGVVLLTLTLCSGLFYMHNLFSSENI--DKAVLSIIAWFVY 220
                      *************************9.99**************************************************..************* PP

  Cytochrom_C_asm 172 aallhsriekgwrgkkaailailgflllllayfgvrllgeg 212
                       +ll+++ ++gwrg+++++++++g+ ll+layfg+r+l+++
       CTQ29415.1 221 IVLLWGHYHEGWRGRRVVWFSVAGAGLLTLAYFGSRVLQQF 261
                      *******777***************************9986 PP

>> DUF1686  Protein of unknown function (DUF1686)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   9.5e-06     0.085      78     177 ..      17     110 ..       5     114 .. 0.76
   2 ?    0.2   0.0     0.068   6.1e+02      96     138 ..     179     223 ..     162     237 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.5e-06
     DUF1686  78 mlyvQslvkkkmsrrqvcvvvlgnillasaclagdklllp..gvedrsslvcvglvvfaallllvsyveeggkkakaeevgevvksvvlvlsvlvltvv 174
                 +l+  +l +k+ s+r+++++ + ++l+  a++ + ++  p   + +  sl++vg +v  ++  ++++v        +++ g+ +  +v+   ++ l ++
  CTQ29415.1  17 ALIIPGLLQKNSSWRRMAILSATIALICHAFALEARI-FPggESGQNLSLLNVGSLVSLMICTVMTIVA-------SRNRGWLLLPIVYAFALINLAFA 107
                 566678999************************9876.5533344556899******999999999998.......66666766666666666666666 PP

     DUF1686 175 syv 177
                  +v
  CTQ29415.1 108 TFV 110
                 555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.068
     DUF1686  96 vvvlgnillasaclagdklllp..gvedrsslvcvglvvfaalll 138
                 +  +g +ll+ +  +g  ++ +  ++e+  + v  ++  f+ ++l
  CTQ29415.1 179 ITQVGVVLLTLTLCSGLFYMHNlfSSENIDKAVLSIIAWFVYIVL 223
                 333444444444444332222233444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.34
# Mc/sec: 2285.70
//
Query:       CTQ29416.1  [L=428]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-50  169.4   2.3    8.5e-50  168.9   2.3    1.2  1  DUF21      Cyclin M transmembrane N-terminal domain
    4.1e-19   68.4   0.1      1e-18   67.1   0.1    1.7  1  CorC_HlyC  Transporter associated domain
    1.2e-06   28.9   0.7    2.4e-05   24.7   0.1    2.9  2  CBS        CBS domain
  ------ inclusion threshold ------
      0.071   12.8   0.1       0.13   11.9   0.1    1.5  1  DUF4239    Protein of unknown function (DUF4239)


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9   2.3   1.9e-53   8.5e-50       3     169 ..      13     184 ..      10     191 .. 0.95

  Alignments for each domain:
  == domain 1  score: 168.9 bits;  conditional E-value: 1.9e-53
       DUF21   3 ivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellaegalavviatvivtllilvfg 101
                 +++++++sa+fsg+Et++++l+r rl+++a++g++ akr++kll++p+rl+s +lign+lvnil+sal+t + ++l+  g+++v+iat ++t+++lvf+
  CTQ29416.1  13 LIVMVIISAYFSGSETGMMTLNRYRLRHMAKQGNRPAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLY--GDAGVAIATGVLTFVVLVFA 109
                 345559***********************************************************************..69****************** PP

       DUF21 102 EilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil.......esesepavseeelkklveeseee 169
                 E+lPk++a+ y+ek+a  ++ +l  l+vl++Plvwll+ ++++++        +  ++a+s++el+++v+es+++
  CTQ29416.1 110 EVLPKTIAALYPEKVAYPSSFLLAPLQVLMMPLVWLLNTITRILMrmmgirtDTVISSALSKDELRTIVNESRSQ 184
                 **************************************************9988999***************987 PP

>> CorC_HlyC  Transporter associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.1   2.2e-22     1e-18       3      79 ..     344     418 ..     342     420 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 2.2e-22
                 ECTTEEEEETT-BHHHHHHHHTSTTHHCT-SBHHHHHHHHH-S---TT-EEEEEETTEEEEEEEEETTCEEEEEEEE CS
   CorC_HlyC   3 ldegsylvdGslpldeleeelglelpeedyeTlgGlllellgriPkegesvevdleglrftVlemdgrrIkkvrvek 79 
                 l++g+ ++dGs++++e++++++++lpe+++ T++G +le+l++iP +g++v+++   + + +l++++++Ik+v+v +
  CTQ29416.1 344 LNDGTVIIDGSANVREINKAFNWHLPEDEARTVNGIILEALEEIPVPGTRVRIE--QYDIDILDVQDNMIKQVKVMP 418
                 689**********************************************88888..******************976 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1       0.1   4.7e+02      12      25 ..     239     252 ..     204     267 .. 0.54
   2 !   24.7   0.1   5.4e-09   2.4e-05       3      56 ..     270     326 ..     267     327 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.1
                 EETTSBHHHHHHHH CS
         CBS  12 vppdttleealelm 25 
                 v   ++l +a+ ++
  CTQ29416.1 239 VLYRDSLDDAISML 252
                 33334555555555 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 5.4e-09
                 HHSBS...SCEEEETTSBHHHHHHHHHHHT..SSEEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   3 dimtr...dvvtvppdttleealelmrekg..vsrlPVVdedgklvGivtlrDllrall 56 
                 +im r   ++ +vp+ t+l+  l ++ +++  v +l VVde+g + G+vt +D+l+ ++
  CTQ29416.1 270 EIMLRaadEIYFVPEGTPLSTQLVKFQRNKkkV-GL-VVDEYGDIQGLVTVEDILEEIV 326
                 565565557889**************7444579.99.******************9986 PP

>> DUF4239  Protein of unknown function (DUF4239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     3e-05      0.13      37      86 ..     145     194 ..     143     248 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
     DUF4239  37 lLrlvtrnlislftselerkeakaliadyvktivseerslvrasrg.elsl 86 
                 lL+ +tr+l+ +++ + +     al  d ++tiv+e+rs + ++r+ ++ l
  CTQ29416.1 145 LLNTITRILMRMMGIRTDTVISSALSKDELRTIVNESRSQI-SRRNqDMLL 194
                 79***********999999999*******************.555524433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1037  (0.0578393); expected 358.6 (0.02)
Passed bias filter:                      678  (0.0378158); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.36
# Mc/sec: 3535.60
//
Query:       CTQ29417.1  [L=196]
Description: heat shock protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-47  158.9   6.0    1.2e-46  158.5   6.0    1.3  1  GrpE        GrpE
  ------ inclusion threshold ------
      0.019   15.3   1.4      0.054   13.8   1.4    1.8  1  Csm1_N      Csm1 N-terminal domain
       0.11   12.6   2.2       0.16   12.1   0.7    1.8  2  ADK         Adenylate kinase
       0.24   11.0   1.5        7.1    6.2   0.0    2.2  2  DMSP_lyase  Dimethlysulfonioproprionate lyase
       0.36   10.7   3.3        1.1    9.1   1.3    2.6  2  PKcGMP_CC   Coiled-coil N-terminus of cGMP-dependent protein 


Domain annotation for each model (and alignments):
>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.5   6.0   3.2e-50   1.2e-46       5     166 .]      35     194 ..       3     194 .. 0.91

  Alignments for each domain:
  == domain 1  score: 158.5 bits;  conditional E-value: 3.2e-50
                 ..CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC...HHH-HHHHHHHHHHHHHHH CS
        GrpE   5 eeeeeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralksak.eneeekslleGvemtlkql 102
                 e+  + ++++++le++l+e++k      e +lr++a+ +nlr+rte+++e+a+kfa+ekf+++LLpv+D+l+ral+ a  +n e+ +++eG+e+tlk++
  CTQ29417.1  35 EQVDPRDEKIANLEAQLAEAQK---REREVMLRAKADEDNLRRRTEQDIEKAHKFALEKFVNELLPVIDSLDRALEVADkANPELAPMVEGIELTLKSM 130
                 4455566677777777777665...5567799********************************************9998999999************* PP

                 HHHHHHTT-EE---TTSB--TTTEEEEEEECSSC...TBEEEEEE--EEETTEEEE-EEEEEEE CS
        GrpE 103 lkiLekhgvekiepkgepFDpnlheavstveddekeegtvvevvqkGYklkdrvlRpAmVkVsk 166
                 l++  k+gve+i+ ++ p Dpn+h+a+ +ve+++++ g v+ v+qkGY+l++r +R+AmV+V+k
  CTQ29417.1 131 LDVVRKFGVEVIADTNVPLDPNVHQAIAMVESEDVAAGNVLAVMQKGYTLNGRTIRAAMVTVAK 194
                 **************************************************************97 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.4   1.5e-05     0.054      30      68 ..      31      69 ..      27      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
      Csm1_N 30 svLsqkletkdqeiesLkeqlaeleekvkeleerrkkqe 68
                 v +++++ +d++i +L++qlae++++ +e   r+k++e
  CTQ29417.1 31 EVSAEQVDPRDEKIANLEAQLAEAQKREREVMLRAKADE 69
                67799*********************9999877777665 PP

>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.7   4.3e-05      0.16      83     145 ..      39     101 ..      37     106 .. 0.87
   2 ?   -1.2   0.0      0.54   1.9e+03      22      49 ..     162     189 ..     154     192 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.3e-05
                 -SSHHHHHHHHHHHHHHTSEESEEEEEE--HHHHHHHHHTGSHHHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  83 PRtveqaealeelleeekvkldlvleldvpeevlveRltgDneetvkkRletykkqtkplidy 145
                 PR+ + a+   +l e +k + +++l+ +++e+ l +R  +D e++ k  le++ ++  p+id 
  CTQ29417.1  39 PRDEKIANLEAQLAEAQKREREVMLRAKADEDNLRRRTEQDIEKAHKFALEKFVNELLPVIDS 101
                 677776666666667788899999*************************************96 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.54
                 SEEEEHHHHHHHHHHCT-HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  22 lahlstGdllRaevksgtelGkeakevm 49 
                    +++G++l   +k  t +G++++++m
  CTQ29417.1 162 SEDVAAGNVLAVMQKGYTLNGRTIRAAM 189
                 5678999999999999999999988877 PP

>> DMSP_lyase  Dimethlysulfonioproprionate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.5    0.0093        33      30      79 ..      44      92 ..      23      96 .. 0.78
   2 ?    6.2   0.0     0.002       7.1      25      58 ..      94     126 ..      89     135 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0093
  DMSP_lyase 30 vkhleaalalaeedalralvralkalepaLeweqsyseadasadfldkya 79
                +++lea la a++ + r+++ + ka e++L++++ +  ++a +  l+k++
  CTQ29417.1 44 IANLEAQLAEAQKRE-REVMLRAKADEDNLRRRTEQDIEKAHKFALEKFV 92
                57899*****99999.9999999*******99887776555444456665 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.002
  DMSP_lyase  25 erlPvvkhleaalalaeedalralvralkalepa 58 
                 e lPv++ l++al+ a++++  +l+ + +++e  
  CTQ29417.1  94 ELLPVIDSLDRALEVADKAN-PELAPMVEGIELT 126
                 569**************999.6666666665544 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.3   0.00031       1.1       6      19 ..      40      53 ..      37      68 .. 0.78
   2 ?    0.4   0.7      0.17   6.2e+02      11      23 ..      57      69 ..      55      75 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00031
   PKcGMP_CC  6 KDERIRELEkrlae 19
                 DE+I+ LE++lae
  CTQ29417.1 40 RDEKIANLEAQLAE 53
                59**********97 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.17
   PKcGMP_CC 11 RELEkrlaekdeE 23
                RE E +l+ k +E
  CTQ29417.1 57 REREVMLRAKADE 69
                78899***99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1476  (0.0823247); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1458.06
//
Query:       CTQ29418.1  [L=292]
Description: NAD kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-75  254.4   0.0    1.5e-75  254.1   0.0    1.1  1  NAD_kinase  ATP-NAD kinase
  ------ inclusion threshold ------
       0.15   12.3   0.0       0.31   11.2   0.0    1.5  1  Rdx         Rdx family


Domain annotation for each model (and alignments):
>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.1   0.0   1.7e-79   1.5e-75       2     291 ..       8     271 ..       7     272 .. 0.98

  Alignments for each domain:
  == domain 1  score: 254.1 bits;  conditional E-value: 1.7e-79
                 EEEEESSCGGTCSHHHHHHHHHHHCT-..EEEEECCGGCCSSSTT--HHHHTTTT--.......EEECCC-TTTTTSSSEEEEEE-HHHHHHHHHHHHH CS
  NAD_kinase   2 vgivvnpikkeaieraeevarwLldalsrvlevtveeklgeslaeaaefrsevisvlkkvkttddtrkaleafadagvdliivvGGDGTaldvarllqk 100
                 +giv +p++++a++++e++ rwL+ +   ++ev+ve++++++l+ +                  + ++ + a++ +++dl++vvGGDG++l +ar+l++
  CTQ29418.1   8 IGIVGHPRHPTALTTHEMLWRWLCSK---GYEVLVEQQIAHELQLS------------------NVKTGTLAEIGQQADLAVVVGGDGNMLGAARTLAR 85 
                 89************************...*************9998..................9999******************************* PP

                 CT-EEEEEESSS--SS-SEEGGGHHHHHHHHHHT-SEEEEEEEEEEEEEETTE......EEEEEEESSEEEEEESSSSS-EEEEEEETTEEEEEEEESE CS
  NAD_kinase 101 aeiPvlgvnaGvkgfltefepeaaaellekllegeirvekrevldavimrskgeediadiviensvlnevviirgpgstlielelyvdtelleadqldg 199
                 ++i v+g+n+G++gflt+++p++a ++l+++leg++  ekr++l+a+++++++        + ++++nevv+++g+ +++ie+e+y+d+ +++++++dg
  CTQ29418.1  86 YDINVIGINRGNLGFLTDLDPDNALQQLADVLEGHYIAEKRFLLEAQVCQQDC------QKRISTAINEVVLHPGKVAHMIEFEVYIDEVFAFSQRSDG 178
                 *****************************************************......4666778********************************* PP

                 EEEE-TGGGGTHHHHTT--EE-TT---EEEEEESESSS----EEE-TT-EEEEEE-.SS--EEEEETTTEEEEE-TT-EEEEEEESSEEEEEE CS
  NAD_kinase 200 livstPtGstayslsaGgplisPgvlailivpicPhslssrpiVvssssklrirva.srseallaldGseelelspgdevrvtasdkkfklir 291
                 li+stPtGstayslsaGgp+++P+++ai++vp++Ph+ls+rp+V++ +s++r+r++ + s++ + +d++ +l ++ g+ v ++++d++ +li+
  CTQ29418.1 179 LIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINGDSTIRLRFShRCSDLEISCDSQIALPIQDGEDVLIRRCDYHLNLIH 271
                 ********************************************************999******************************9997 PP

>> Rdx  Rdx family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.5e-05      0.31      11      62 ..     126     180 ..     120     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.5e-05
                 TTHHHHHHHHHHHHHHCCCCSSEEEEEE...ESTT-EEEEETTEEEEEHHHHTSS CS
         Rdx  11 kwmlraaelaqellstfpeslgevalqp...stgGaFeVtldgelvwsrkeeggf 62 
                 ++ l a+  +q  ++++++ + ev l+p   +    FeV++d+   +s+  +g +
  CTQ29418.1 126 RFLLEAQVCQQDCQKRISTAINEVVLHPgkvAHMIEFEVYIDEVFAFSQRSDGLI 180
                 67789999********************77666778************9999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2347.51
//
Query:       CTQ29419.1  [L=553]
Description: recombination and repair protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-18   68.6   1.7    1.8e-17   64.5   0.0    2.4  2  AAA_23     AAA domain
    2.1e-18   66.6   0.0    5.1e-18   65.3   0.0    1.6  1  SMC_N      RecF/RecN/SMC N terminal domain
    7.1e-06   25.7   0.0    1.8e-05   24.4   0.0    1.6  1  AAA_29     P-loop containing region of AAA domain
    0.00093   19.1   0.3        1.1    9.0   0.0    2.3  2  AAA_21     AAA domain, putative AbiEii toxin, Type IV TA syst
     0.0018   18.1   0.0     0.0081   15.9   0.0    2.0  2  AAA_15     AAA ATPase domain
     0.0033   17.9   2.4        1.1    9.8   0.0    3.4  3  ABC_tran   ABC transporter
     0.0056   17.0   6.8       0.15   12.3   2.1    4.1  3  AAA_22     AAA domain
  ------ inclusion threshold ------
      0.051   12.8   0.0       0.08   12.1   0.0    1.2  1  NTPase_P4  ATPase P4 of dsRNA bacteriophage phi-12
        5.9    5.7  12.1        8.9    5.1  12.1    1.2  1  DUF812     Protein of unknown function (DUF812)


Domain annotation for each model (and alignments):
>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   8.9e-21   1.8e-17       1     194 [.       4     216 ..       4     222 .. 0.74
   2 ?    2.5   0.9     0.093   1.9e+02     115     176 ..     247     311 ..     224     382 .. 0.63

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 8.9e-21
      AAA_23   1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfen.kdgrytrsiererelsk 98 
                 +L+i+nf   r+ eidF++g+t+ItG++GaGK+  +dA+ l+L+g+++    ++g    +   +++ +++ +a+  l+ +  ++gr  +++   r +++
  CTQ29419.1   4 QLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGRAEADMVRRGATRADLCARFALKDTPAAQRWLEENQlESGR--ECL--LRRVIS 98 
                 599******************************************99887775555555555567776555555444322223343..233..344555 PP

      AAA_23  99 kkgkttkkaklelleideleqfisellgskkiilnlilflgqer.............feefelkdkke..............rleelekeleeledekk 170
                  +g+++ + ++  +  ++l+++ + l+++  +  +++l +++ +             +         +              +l++ +++ +e  ++++
  CTQ29419.1  99 ADGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQktlldgytgeyalT---------QrmaehyrqwhqscrELAQHQQQSQERAARAD 188
                 5678888888888999999999999999999999999999998855555544444441.........03444555667777799999999999999*** PP

      AAA_23 171 llekleqekekek....eleeleeelee 194
                 ll+ +++e+++ +    e+e++ ee + 
  CTQ29419.1 189 LLQYQLKELNEFNplpgEFEQIDEEYKR 216
                 ***9999988888788877777777765 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.093
      AAA_23 115 deleqfisellgskkiilnlilflgqerfeefelkdkkerleelekeleeledekkllekl......e 176
                  + +q++sel+g + + + ++++l +      +l++ +++l+ + + l+   ++  +le++      +
  CTQ29419.1 247 YTAKQLVSELVGMDSKLSGVLDMLEEATI---QLSEASDELRHYHDRLDLDPNRLFELEQRlsrqiaL 311
                 45678899999999998888888888776...555556666666666665555555555553332220 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   2.5e-21   5.1e-18       1     205 [.       1     499 [.       1     514 [. 0.93

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 2.5e-21
                 EEEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTT..TCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   1 vlkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakkl..rseklsdlihkskekasvkkaeveitfdnedkklkiekeev 97 
                 +l +l+i+nF     ++ +++f++++tai+G+ G+GKs  +dA+  +LG r+   +  r ++  dl  +  + + +  a+  +   +e++   ++  e+
  CTQ29419.1   1 MLAQLTISNFAIV--RELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGRAEADMvrRGATRADLCAR-FALKDTPAAQRWL---EENQL--ESGREC 91 
                 578999****988..79********************************99776665566778888887.4444444444333...33333..57889* PP

                 EEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT............................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................................. RF
       SMC_N  98 sisrrvkrkgeseykingkevtkkevsellesagiske............................................................. 135
                  ++r ++ +g+s+ +ing+ v  ++++e l +  i+++                                                             
  CTQ29419.1  92 LLRRVISADGRSRGFINGTAVPLSQLRE-LGQLLIQIHgqhahqlltkpehqktlldgytgeyaltqrmaehyrqwhqscrelaqhqqqsqeraaradl 189
                 ************************9986.677888888889********************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CTQ29419.1 190 lqyqlkelnefnplpgefeqideeykrlansgqllstcqhaltvladgeeanlqsqlytakqlvselvgmdsklsgvldmleeatiqlseasdelrhyh 288
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CTQ29419.1 289 drldldpnrlfeleqrlsrqialarkhqvmpeelpavyqamleeqrllddsagsleslsqqvvehhqlaletarqlhalrqasadeltqlitesmhsls 387
                 *************************************************************************************************** PP

                 ..........................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE CS
                 ..........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 ..........................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf 192
                                                           + SgGe + +ala+ + + +   +p  ++De+d  +     + v +ll++  +++Q+
  CTQ29419.1 388 mphgvfaievafderhltadgadhiefrvttnpgqplqpiakVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQV 486
                 *************************************************************************************************** PP

                 EEE-SSHHHCCC- CS
                 xxxxxxxxxxxxx RF
       SMC_N 193 ivislreemleka 205
                 +++++  ++    
  CTQ29419.1 487 MCVTHLPQVAGCG 499
                 ****988776555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   8.9e-09   1.8e-05       1      46 [.       2      46 ..       2      53 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 8.9e-09
      AAA_29  1 LkrlqlvNWgtfdghtieidlkgatlltGpsGsGKSTllDAiqalL 46
                L++l + N    ++ +i+++ +g+t +tG++G+GKS  +DA+   L
  CTQ29419.1  2 LAQLTISNFAIVRELEIDFH-SGMTAITGETGAGKSIAIDALGLCL 46
                56777888888888889998.779*****************97766 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00057       1.1       1      22 [.      24      45 ..      24      67 .. 0.89
   2 !    8.2   0.3   0.00096       1.9     221     299 ..     414     493 ..     274     496 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00057
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                +++++G  g+GKS  +dal l 
  CTQ29419.1 24 MTAITGETGAGKSIAIDALGLC 45
                699****************876 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00096
      AAA_21 221 vvflengdgqelparel.SdGtkrl.lalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299
                 ++   n++    p++++ S G ++  +  +  + ++  +++ l++DE++ g+     + + +ll++l +  +Qv+++TH p
  CTQ29419.1 414 FRVTTNPGQPLQPIAKVaSGGELSRiALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLP 493
                 5555555666667777767777655145555555555566**************9999999***88888.8********87 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.1e-06    0.0081       1      45 [.       1      44 [.       1      70 [. 0.94
   2 ?   -0.9   0.0      0.53   1.1e+03     342     367 ..     471     494 ..     409     496 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.1e-06
      AAA_15  1 MkIkkikikNFRslkdveidlseeltvliGkNnsGKSsilealdl 45
                M + +++i NF   ++ eid+ + +t + G+ ++GKS +++al l
  CTQ29419.1  1 M-LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGL 44
                6.899*************************************965 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.53
      AAA_15 342 kvlikllkelandnktQviitTHSph 367
                  v+ kll+ l +++  Qv++ TH p 
  CTQ29419.1 471 AVVGKLLRQLGEST--QVMCVTHLPQ 494
                 56668888888888..*******765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00053       1.1      12      31 ..      23      42 ..      14      46 .. 0.84
   2 ?    1.0   0.2      0.29   5.8e+02      52     120 ..     161     235 ..     135     243 .. 0.73
   3 ?    4.7   0.0      0.02        41      98     129 ..     420     451 ..     313     462 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00053
                SEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlkll 31
                 ++ai+Ge+GaGKS  + +l
  CTQ29419.1 23 GMTAITGETGAGKSIAIDAL 42
                479***********988775 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.29
                 B-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  52 qeleslrkeigvlpqepqlfpeltvren......esdeeiekalsklglkelkdtvvksspssLSgGqkqrvala 120
                 +  ++++++ + l q++q  +e  +r        ++ +e++ +  ++++++ + +++ +s++ LS  q    +la
  CTQ29419.1 161 EHYRQWHQSCRELAQHQQQSQERAARADllqyqlKELNEFNPLPGEFEQIDEEYKRLANSGQLLSTCQHALTVLA 235
                 346778888888888866666655555588877777777888888888888899999899999999988888887 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.02
                 TCBGESTTSGGS-HHHHHHHHHHHHHHHTSSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  98 kdtvvksspssLSgGqkqrvalarallkkpkl 129
                 + ++++  ++  SgG+ +r+ala  +++++k+
  CTQ29419.1 420 PGQPLQPIAKVASGGELSRIALAIQVITARKM 451
                 344443334888*************9999887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   2.1   7.7e-05      0.15       4      37 ..      21      54 ..      17     240 .. 0.90
   2 ?    1.8   0.2      0.14   2.8e+02      54     103 ..     344     412 ..     336     420 .. 0.68
   3 ?    0.9   0.0      0.26   5.2e+02      82     103 ..     442     465 ..     428     492 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.7e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaee 37
                + g++++tGe+G+GK+  +  l   l  +a+a++
  CTQ29419.1 21 HSGMTAITGETGAGKSIAIDALGLCLGGRAEADM 54
                789***************9999888777777666 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.14
      AAA_22  54 kdllrellralglelka.......erlsseellealeqalrarav............ielliiDEaqhl 103
                 ++l +++++  +l l++       + +s +el +++++ +++ ++             + l  D a+h+
  CTQ29419.1 344 ESLSQQVVEHHQLALETarqlhalRQASADELTQLITESMHSLSMphgvfaievafdERHLTADGADHI 412
                 555555555555555555555557778999999999999999999977776666666666666666666 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.26
      AAA_22  82 leqalrarav.ielliiDEaqh.l 103
                   q + ar++ +++li DE++  +
  CTQ29419.1 442 AIQVITARKMeTPALIFDEVDVgI 465
                 445566666679*******99766 PP

>> NTPase_P4  ATPase P4 of dsRNA bacteriophage phi-12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     4e-05      0.08     108     129 ..      19      40 ..       6      61 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4e-05
                 TEESEEEEEEESTTSSHHHHHH CS
   NTPase_P4 108 nilsGlvvvvGktgsGkskaLn 129
                 ++ sG+++++G+tg+Gks+a++
  CTQ29419.1  19 DFHSGMTAITGETGAGKSIAID 40 
                 568***************6554 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  12.1    0.0045       8.9     239     450 ..     161     381 ..     114     388 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0045
      DUF812 239 eeykkrkkeklqkrlaeqlrkaalkseeae.ssasksksdlaellsefseksetdslktkgsrfthaeklqftke......ela.....kkaeteeelk 325
                 e y++  +++ ++ +++q +++  + ++   + + k+ ++++ l  ef++ +e+ + +++  ++ ++ +  +t        +       ++++   el 
  CTQ29419.1 161 EHYRQW-HQSCRELAQHQQQSQERAARADLlQYQLKELNEFNPLPGEFEQIDEEYKRLANSGQLLSTCQHALTVLadgeeaN-LqsqlyTAKQLVSELV 257
                 222222.222222222222222222222223455566666666666667777777777777776666555442222233331.0333434444444443 PP

      DUF812 326 kkreeeleelqeqieeleskieeleeeikklessikqveeeleeekeeneelekevklkkktlellpdaeeniekLqalveasaqrlvelakqWekhRv 424
                    + +l+ + +++ee+  +++e ++e++++ +++    + l e+++  +++ +  ++++ + e lp   + + + q+l+++sa +l +l++q  +h +
  CTQ29419.1 258 -GMDSKLSGVLDMLEEATIQLSEASDELRHYHDRLDLDPNRLFELEQRLSRQIALARKHQVMPEELPAVYQAMLEEQRLLDDSAGSLESLSQQVVEHHQ 355
                 .34457788888888888888888888888888888888888888888888888888888899************************************ PP

      DUF812 425 plieeyrelkesksekekeaerklee 450
                   +e  r+l    +  ++e  + ++e
  CTQ29419.1 356 LALETARQLHALRQASADELTQLITE 381
                 **********9999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1036  (0.0577835); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 4095.06
//
Query:       CTQ29420.1  [L=113]
Description: small membrane lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-27   92.8   0.3    1.1e-26   92.5   0.3    1.1  1  SmpA_OmlA       SmpA / OmlA family
  ------ inclusion threshold ------
      0.094   12.8   0.0       0.15   12.2   0.0    1.3  1  Sulfolobus_pRN  Sulfolobus plasmid regulatory protein


Domain annotation for each model (and alignments):
>> SmpA_OmlA  SmpA / OmlA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.3   1.2e-30   1.1e-26       1      70 [.      35     104 ..      35     105 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 1.2e-30
                 .HHTTSHHHHT--TT-BHHHHHHHH-S-SEE-SSSSSEEEEEEEETTE.....EEEEEEEE-TTSBEEEE CS
   SmpA_OmlA   1 GnvvtqeqvdqlkpGmtkeqVryllGsPsltdtfdpnrwdYvynfkrggkaveqqvlavyFdddglvrsi 70 
                 Gn++ +++v+++++Gmt++qV y lG+P++td+f++n+w Yv+++ +g+++v+qq+l+++F++ g++++i
  CTQ29420.1  35 GNYLAPNDVAKIRVGMTQQQVAYALGTPMMTDPFGTNTWFYVFRQEPGHQKVTQQTLTLTFNSGGVLTNI 104
                 9******************************************************************997 PP

>> Sulfolobus_pRN  Sulfolobus plasmid regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.6e-05      0.15       3      33 ..       5      35 ..       3      40 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.6e-05
  Sulfolobus_pRN  3 kltlsekillilsrrcatleeleektGieke 33
                     lt +  +ll+l+ +c tle++  +  i++ 
      CTQ29420.1  5 TLTAAAAVLLMLTAGCSTLERVVYRPDINQG 35
                    5788899**************9888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1011.83
//
Query:       CTQ29421.1  [L=96]
Description: hypothetical protein CH1034_280026 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-33  114.8   0.2      2e-33  114.6   0.2    1.0  1  Ub-RnfH   RnfH family Ubiquitin


Domain annotation for each model (and alignments):
>> Ub-RnfH  RnfH family Ubiquitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.6   0.2   1.1e-37     2e-33       1      83 []       5      87 ..       5      87 .. 0.99

  Alignments for each domain:
  == domain 1  score: 114.6 bits;  conditional E-value: 1.1e-37
     Ub-RnfH  1 ikveVvyalpekqvllelevpegttveeAieaSgilekfpeidlekakvGifgkavkldavLqegDRvEiYRpLiaDPkearr 83
                i+veV+yalpekq+l +++++eg+tve+Ai aSg+l+  ++idl+k+k+Gi+++ vkl++++++gDRvEiYRpLiaDPke rr
  CTQ29421.1  5 IRVEVAYALPEKQYLQRVTLDEGATVEQAIIASGLLALRDDIDLAKNKLGIYSRPVKLHDEVHDGDRVEIYRPLIADPKELRR 87
                79*******************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 898.15
//
Query:       CTQ29422.1  [L=145]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-30  106.3   0.0    1.5e-30  106.1   0.0    1.0  1  Polyketide_cyc   Polyketide cyclase / dehydrase and lipid tra
    2.3e-08   34.4   0.0    2.7e-08   34.2   0.0    1.0  1  Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid tra
  ------ inclusion threshold ------
       0.13   12.8   0.0       0.18   12.3   0.0    1.2  1  RNase_PH         3' exoribonuclease family, domain 1


Domain annotation for each model (and alignments):
>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.0   2.4e-34   1.5e-30       1     130 []      10     135 ..      10     135 .. 0.98

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 2.4e-34
                     ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE...EEEECSTTSSCEEEEEEEEEEETTTEEECTTCCCCCEEEEEEEECTECCEEECEEE CS
  Polyketide_cyc   1 vpapadqvyalvadvesypeflphcssvevleeaesglsadlevgfggltesftarvtldppeeitfklvegdfkslegkWtieslppnsggtrt 95 
                     vp +a+q+y+lv+dv syp+flp+c+ ++vle  ++++ a + v+++g++ +ft+r+tl  + +i ++lv+g+fk+l g W++ +l+      ++
      CTQ29422.1  10 VPFSAEQMYQLVNDVKSYPDFLPGCTGSRVLEFGPTQMTAAVDVSKAGISKTFTTRNTLTSNQSILMSLVDGPFKKLIGGWKFIPLS----PEAC 100
                     7899***********************************************************************************....688* PP

                     EEEEEEEEE-SSCHHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc  96 kvalevdfkfaspllgalvgqvaervldellaale 130
                     k+++ +df+f+ +l++++ g ++++ + ++++a++
      CTQ29422.1 101 KIEFHLDFEFTNKLIEMAFGRIFKELAANMVQAFT 135
                     *********************************95 PP

>> Polyketide_cyc2  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   4.6e-12   2.7e-08       2     129 ..       2     133 ..       1     141 [. 0.71

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 4.6e-12
                      EEEEEEEEESS-HHHHHHHHTTTTGGGGT-TTEEEEECSESTSSS..TTTEEEEECCCS...SEEEEEEEEEETTTTEEEEEEE.SSS-TSEEE CS
  Polyketide_cyc2   2 vkvtvsvviaappekVwalvsdfenwprWhpevarveleggggpa..rgvegtvrvggr...gtvreelvevdpegrllsyrivkpvpvanyva 90 
                       ++++++ ++ ++e+ + lv d +++p   p+ + +++ +  gp+  + +   v+++g     t+r +l+  +     + + +v + p+++  +
       CTQ29422.1   2 PQISRTALVPFSAEQMYQLVNDVKSYPDFLPGCTGSRVLE-FGPTqmTAA-VDVSKAGIsktFTTRNTLTSNQS----ILMSLV-DGPFKKLIG 88 
                      5789********************************9998.777654333.56666665533236666666554....555555.68******* PP

                      EEEEEECC.ETEEEEEEEEEEE.E--T....T--HHHHHHHHHHH CS
  Polyketide_cyc2  91 twtvtpdg.ggtrvtwtgefda.gplg....gpfekpaaakavkg 129
                       w++ p   + ++++++ +f++ + l     g + k++aa++v++
       CTQ29422.1  89 GWKFIPLSpEACKIEFHLDFEFtNKLIemafGRIFKELAANMVQA 133
                      ******77477**********754444222233344444444444 PP

>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     3e-05      0.18      10      43 ..      29      61 ..      23      87 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3e-05
                SSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCC CS
    RNase_PH 10 gvlsqanGSaylelGdtkvlasvtgpieerpsee 43
                ++l+ + GS +le+G t+  a+v +++   +s++
  CTQ29422.1 29 DFLPGCTGSRVLEFGPTQMTAAVDVSKAG-ISKT 61
                67999*******************99966.3332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1110.70
//
Query:       CTQ29423.1  [L=160]
Description: trans-translation protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-56  187.7   0.1    1.1e-55  187.5   0.1    1.0  1  SmpB      SmpB protein
  ------ inclusion threshold ------
      0.063   12.5   0.0      0.092   12.0   0.0    1.2  1  DUF4824   Domain of unknown function (DUF4824)
      0.067   13.2   0.1       0.32   11.0   0.1    2.0  2  PepSY_2   Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> SmpB  SmpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5   0.1   1.9e-59   1.1e-55       1     144 []      14     157 ..      14     157 .. 0.98

  Alignments for each domain:
  == domain 1  score: 187.5 bits;  conditional E-value: 1.9e-59
                 EEE-CHHHTTSEEEEEEEEEB---HHHHHHHHH--EESSSEEEEEESSCEEEEESEE---S-.-SS----TT--EEBB--HHHHHHHHHHHHHHT-EEE CS
        SmpB   1 iakNkkarhdYeieetyeaGivLkGtEvkslragkvnlkdsyvkikngelfllnvhiseyek.gnifnhdpkrkrkLLlhkkeikklagkveekgltlv 98 
                 ia Nk+arh+Y+ie++yeaG++L+G+Evkslragk+n+ dsyv +k+ge+fl+++++++++  ++++ +dp+r+rkLLl+++e+++l g+++++g+t+v
  CTQ29423.1  14 IALNKRARHEYFIEDEYEAGLALQGWEVKSLRAGKANIGDSYVILKDGEAFLFGANFTPMAVaSTHYVCDPTRTRKLLLNQRELDTLYGRINREGYTVV 112
                 688**********************************************************9888889******************************* PP

                 EEEEEE.ESSEEEEEEEEEEC--SS--XXXXXXXXXXXXXXXXXXX CS
        SmpB  99 plklyfkkkglvKveialakgkklydkretlkerdakreieralke 144
                 +l+ly+ k+ ++Kv+i++akgkk++dkr++lk+r+++ +++r++k+
  CTQ29423.1 113 ALSLYW-KNAWCKVKIGVAKGKKQHDKRTDLKDREWALDKARIMKH 157
                 ******.889*********************************985 PP

>> DUF4824  Domain of unknown function (DUF4824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.5e-05     0.092      20      70 ..      89     153 ..      82     157 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.5e-05
     DUF4824  20 rllLseRELrlassflsken.sglsLrLewr.............tksddtgsraersllwldeek 70 
                 +llL +REL+  ++++++e  ++++L L w+             +k++d  ++++  + +ld+++
  CTQ29423.1  89 KLLLNQRELDTLYGRINREGyTVVALSLYWKnawckvkigvakgKKQHDKRTDLKDREWALDKAR 153
                 79************8888854999******97777777777766555555555555566666665 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   5.3e-05      0.32      32      69 ..      27      64 ..       9      75 .. 0.87
   2 ?    0.2   0.0      0.13   7.7e+02      26      46 ..      91     111 ..      63     144 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.3e-05
     PepSY_2 32 reklvakleaqGykvkkievddggcyEvegldkdGkkv 69
                +++ +a l+ qG++vk+ ++ + +  + +++ kdG+ +
  CTQ29423.1 27 EDEYEAGLALQGWEVKSLRAGKANIGDSYVILKDGEAF 64
                6778899999*************************865 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.13
     PepSY_2  26 kadwlpreklvakleaqGykv 46 
                   ++   ++l   ++ +Gy+v
  CTQ29423.1  91 LLNQRELDTLYGRINREGYTV 111
                 344456667777777788876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1328.99
//
Query:       CTQ29424.1  [L=266]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0059   16.9   0.0     0.0088   16.3   0.0    1.3  1  NTP_transf_2  Nucleotidyltransferase domain
  ------ inclusion threshold ------
      0.025   14.7   0.0      0.046   13.8   0.0    1.4  1  Polbeta       Polymerase beta, Nucleotidyltransferase


Domain annotation for each model (and alignments):
>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   9.8e-07    0.0088       4      47 ..      16      59 ..      13     111 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 9.8e-07
                  HHHHHHHHTTTSEEEEEHHHHCTTSCTTSSEEEEEEESTTCHHH CS
  NTP_transf_2  4 lleelkelepvakvvlfGSyarGtalkgSDiDllvvlpeevsre 47
                  l+ +l++ + + ++ + GS+  G +  +SD+D++vv +   ++e
    CTQ29424.1 16 LKLKLQSDSRIHSLLAGGSFIHGGFDQYSDLDFVVVIDPLYYDE 59
                  666777777799999*********************99886654 PP

>> Polbeta  Polymerase beta, Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.2e-06     0.046       1      43 [.      14      59 ..      14      79 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.2e-06
                -STTTTHHHHHHHHSTTEEEEEE-S------EEEEEEEESS-...- CS
     Polbeta  1 ekikeilekekeielaylFGSrakgkareeSDiDlavllkek...l 43
                e++k  l++++ i  ++  GS+ +g + + SD+D+ v+++     +
  CTQ29424.1 14 EQLKLKLQSDSRIHSLLAGGSFIHGGFDQYSDLDFVVVIDPLyydE 59
                57778899999***************************99873322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2206.01
//
Query:       CTQ29425.1  [L=294]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-45  153.8   1.7    5.3e-45  153.4   1.7    1.1  1  LysR_substrate  LysR substrate binding domain
    1.6e-17   63.2   0.2    3.1e-17   62.3   0.2    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.092   12.8   0.0       0.69   10.0   0.0    2.4  3  HemN_C          HemN C-terminal domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.4   1.7   8.8e-49   5.3e-45       3     206 ..      89     292 ..      88     294 .] 0.92

  Alignments for each domain:
  == domain 1  score: 153.4 bits;  conditional E-value: 8.8e-49
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSE CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gepv 96 
                     +++grLr+ +p  +a+ +++p l++f +ryP++ l + ++d  +++dl++eg +D++ir+g+++ s+l+arpL++ ++v +aspd+ L + g p 
      CTQ29425.1  89 RPQGRLRVDMPAGIAHFIVMPHLPDFYRRYPDIYLMIGVSD--RQVDLIQEG-VDCVIRTGELNNSSLVARPLGRFRWVTCASPDY-LREyGVPP 179
                     689**************************************..*********.*********************************.******** PP

                     CGGGGCTSEEEEESTTST.HHHHHHHHHHCT..TEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEE CS
  LysR_substrate  97 sledLadeplilleegsg.lrdlledalrea..glkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvy 187
                     s+e+L +++ +++  g +   d+++ + + +   +++ +   vn++   + +++aG G+a l + +v+d+l++grlv  +l ++++p  ++ l+y
      CTQ29425.1 180 SPEALSQHRAVHYFSGQArRADEFRFVRHGEtfSVPVSGNAAVNETGLYIKMCLAGFGLAQLAENVVADHLQEGRLV-EVLTDWQPPpVPVTLLY 273
                     *************6666645555555555553356669***************************************.9999998888******* PP

                     ETTCCCHHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflre 206
                     +++r lspavraf++++ e
      CTQ29425.1 274 PHQRFLSPAVRAFAEWMSE 292
                     ****************987 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.2   5.1e-21   3.1e-17       2      59 ..       5      62 ..       4      63 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 5.1e-21
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                ++++ f  vae+gsf rAAe L l  ++v+  ik+LE+ l+v+L++Rt+r+++LT++G
  CTQ29425.1  5 QAMQMFMRVAEAGSFVRAAETLSLPASTVTSTIKNLEKYLKVRLLNRTTRRVSLTPEG 62
                7899*****************************************************9 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00012      0.69      39      65 ..      37      63 ..      25      64 .. 0.90
   2 ?   -2.1   0.0       0.7   4.2e+03      52      66 .]     147     161 ..     146     161 .. 0.90
   3 ?   -1.3   0.0       0.4   2.4e+03      16      29 ..     231     244 ..     231     258 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00012
      HemN_C 39 aaaleklqeqGLLeldggrlrltprGr 65
                +++lek+ + +LL+ + +r++ltp+G+
  CTQ29425.1 37 IKNLEKYLKVRLLNRTTRRVSLTPEGM 63
                789***********************8 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.7
      HemN_C  52 eldggrlrltprGrl 66 
                 el++++l++ p Gr+
  CTQ29425.1 147 ELNNSSLVARPLGRF 161
                 7999*********96 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.4
      HemN_C  16 RlreGldlaafeqr 29 
                 ++ +G+ la ++++
  CTQ29425.1 231 MCLAGFGLAQLAEN 244
                 68888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2485.77
//
Query:       CTQ29426.1  [L=212]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-08   33.8   0.0    4.1e-08   33.4   0.0    1.2  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   2.3e-12   4.1e-08      38     139 ..      69     170 ..      40     181 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2.3e-12
                    EEEEEETTSHHHHHHHHHSEEEEEEEBCCGHHHHHHTCS...SCCCCCCCCCCCEEECTCCCSEEETTCSEEEEEEEEEEECC.TTEEEEEEEEEE CS
  Flavin_Reduct  38 vafslrlpsstadalkeagefvinllsesqealadafsqksgprtddksifagltweesptgapallgalasleCqvvgsvel.gdhelfigeVva 132
                    v+  ++++ +t + ++++g fv+ +   sq a +   +++s     dk ++ +  ++++   +p+++g+ ++l C+v+   ++ ++h+lf+g +va
     CTQ29426.1  69 VVAYIGTQAFTRQLVEKSGYFVVQIPVVSQMATVLYAGGRSYADAPDKNDTIPFFYQPE-FDLPLVAGCAGWLVCKVMPYPDIqQQHNLFMGDIVA 163
                    5566889999***************999999966666666666999999999******6.9******************9999668********** PP

                    EEESTTE CS
  Flavin_Reduct 133 vkvgdda 139
                    ++ +d  
     CTQ29426.1 164 AWSDDRV 170
                    **98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1613.44
//
Query:       CTQ29427.1  [L=121]
Description: putative helix-turn-helix, AraC type [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-23   81.8   0.1      4e-23   81.5   0.1    1.1  1  HTH_18        Helix-turn-helix domain
    7.2e-16   57.8   0.0    9.3e-08   32.0   0.0    2.2  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
  ------ inclusion threshold ------
       0.11   12.1   0.0       0.14   11.8   0.0    1.1  1  PP2C          Protein phosphatase 2C
       0.15   11.4   0.0        0.2   11.1   0.0    1.1  1  Arm_2         Armadillo-like
       0.17   11.3   1.1       0.33   10.4   0.1    2.0  3  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.1   1.1e-26     4e-23       1      80 [.      28     106 ..      28     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 1.1e-26
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +a+++g+s ++Lqr+fk+++g++  ey+r+++l++  ++L++ ++ ++  +A alGF+++++F+r f++ +g+ P+ +rr
  CTQ29427.1  28 VARRAGYSKWHLQRIFKEHTGQPLGEYIRAKKLQKSIERLAH-SNEPILNVAIALGFDSQQSFNRSFKRQYGQAPGVWRR 106
                 59**************************************86.************************************8 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0     8e-09   2.9e-05       1      40 [.      15      54 ..      15      56 .. 0.89
   2 !   32.0   0.0   2.6e-11   9.3e-08       2      41 ..      68     105 ..      64     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 8e-09
                HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHH CS
    HTH_AraC  1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqy 40
                + ++l+++l i+ +A  +g+S  +++r+Fk+ tG+   +y
  CTQ29427.1 15 IDNHLDSRLDIDTVARRAGYSKWHLQRIFKEHTGQPLGEY 54
                689*******************************855555 PP

  == domain 2  score: 32.0 bits;  conditional E-value: 2.6e-11
                 HCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   2 renlstnltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                 +   ++n  i ++A +lgf S++ F r Fk+++G+ P  +r
  CTQ29427.1  68 A---HSNEPILNVAIALGFdSQQSFNRSFKRQYGQAPGVWR 105
                 4...899******************************8887 PP

>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.8e-05      0.14      11      82 ..      14      85 ..       9     103 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
                CCSSHHEEEECCCCTCTTCCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTHHHHHHHHHHHHH CS
        PP2C 11 arksmedahislanlesssgkssvsffavfdghggseaakyarehleeilksqksfeelekleqalrksfla 82
                + ++ +d+ ++ ++     g+s+++++ +f++h g+ + +y r +  ++  ++   +    l+ a+  +f +
  CTQ29427.1 14 WIDNHLDSRLDIDTVARRAGYSKWHLQRIFKEHTGQPLGEYIRAKKLQKSIERLAHSNEPILNVAIALGFDS 85
                667788999999999999***********************9988774433333322222466666666666 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.6e-05       0.2       7      66 ..      53     111 ..      49     120 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.6e-05
       Arm_2   7 evLepkelekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitii.anllsks 66 
                 e++ +k+l+k +++L  s++p+++  + ++lg +   s+n+ + r++g  + +   ++s+s
  CTQ29427.1  53 EYIRAKKLQKSIERLAHSNEPILN--VAIALGFDSQQSFNRSFKRQYGQAPGVwRRSISRS 111
                 678899***************985..789******************98875524455555 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   9.3e-05      0.33      16      51 ..      11      46 ..       9      47 .. 0.87
   2 ?   -2.9   0.0       1.3   4.6e+03      20      34 ..      64      78 ..      59      78 .. 0.56
   3 ?   -2.0   0.1      0.67   2.4e+03      25      36 ..     108     118 ..     104     118 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.3e-05
  HTH_Tnp_ISL3 16 leayilelllesrsvkavArqlgvSwtTVwrildry 51
                  l ++i   l ++  + +vAr+ g S + ++ri++++
    CTQ29427.1 11 LIDWIDNHLDSRLDIDTVARRAGYSKWHLQRIFKEH 46
                  667888888888999*******************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.3
  HTH_Tnp_ISL3 20 ilelllesrsvkavA 34
                  i +l++++ ++  vA
    CTQ29427.1 64 IERLAHSNEPILNVA 78
                  455555547776666 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.67
  HTH_Tnp_ISL3  25 lesrsvkavArq 36 
                   +++ sv++ +rq
    CTQ29427.1 108 ISR-SVAQTSRQ 118
                   445.88877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 989.63
//
Query:       CTQ29428.1  [L=391]
Description: putative multidrug efflux system membrane fusion component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-20   72.5   2.9    1.1e-17   63.6   0.2    3.0  3  Biotin_lipoyl_2  Biotin-lipoyl like
      1e-17   64.1   2.2    2.1e-17   63.0   2.2    1.5  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
      8e-11   42.6   0.7    2.8e-05   24.8   0.0    3.4  3  HlyD_3           HlyD family secretion protein
      0.004   16.9   0.0      0.075   12.9   0.0    2.4  2  Biotin_lipoyl    Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.2   2.4e-21   1.1e-17       1      50 []      66     115 ..      66     115 .. 0.98
   2 ?   -4.1   0.3       3.2   1.4e+04      37      48 ..     118     129 ..     117     130 .. 0.79
   3 !    8.3   0.0   0.00046       2.1       3      29 ..     176     202 ..     169     209 .. 0.94

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 2.4e-21
  Biotin_lipoyl_2   1 evvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50 
                      e+v++ ++vsG + ++n +dGq+Vk+G+vL+++D+r +++al qa+a+la
       CTQ29428.1  66 ESVQLRPRVSGYIDKVNYTDGQEVKKGQVLFTIDDRTYRAALEQAQAALA 115
                      79*********************************************986 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3.2
  Biotin_lipoyl_2  37 alqlalaqaeaq 48 
                      ++q+ laq ea+
       CTQ29428.1 118 KTQASLAQSEAN 129
                      578899998887 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00046
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGdv 29 
                      ++++ap++Gr ++ +++ G  V aGd+
       CTQ29428.1 176 TKVTAPIDGRASRALITSGNLVTAGDT 202
                      589**********************96 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   2.2   4.8e-21   2.1e-17      19     214 .]      67     297 ..      57     297 .. 0.78

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 4.8e-21
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXX..................XXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  19 larvsarveGwveklyvnatgdkVkkGqpLael....yspelvaaqeeyllalkakkklkkke.................lleaarerLrllgvseeqi 96 
                  +++ +rv+G+++k++ +  g++VkkGq L+++    y   l +aq+++  a+++++ ++++                  + +++++   + ++ ++q 
  CTQ29428.1  67 SVQLRPRVSGYIDKVNYT-DGQEVKKGQVLFTIddrtYRAALEQAQAALARAKTQASLAQSEAnrtdklvhtnlvsreewEQRRSAAVQAQADIRAAQ- 163
                 46789************9.*************944445667778888888877755544333377889999999876666333333334556666666. PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXX.........XXXX CS
    HlyD_D23  97 aelektgkvqktvtvkapisGvVteknvreGqyvqpgdt...lftiadlstVWveaevyeqq....lalvkvgqkvevtvealpgk.........tfeG 179
                 a++ + +     ++v+api+G   +  ++ G+ v++gdt   l t+ + +tV+v+++v e+      +l + gq ++ + +alp +           +G
  CTQ29428.1 164 AAVDAAQLNLDFTKVTAPIDGRASRALITSGNLVTAGDTasvLTTLVSQKTVYVYFDVDESTylhyQNLARRGQGASSDNQALPVEiglvgeegyPHQG 262
                 56666666667789********************999876669999999*********99762222578999**99999999996533333333378** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 180 kvdyiyptvdpetRtvkvRieldNpdgkLkpgmfA 214
                 kvd+++ ++ p+t t+++R+ ldN+++ + pg+fA
  CTQ29428.1 263 KVDFLDNQLTPSTGTIRMRALLDNSQRLFTPGLFA 297
                 *********************************98 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.5e-05     0.065       2      49 ..      70     116 ..      69     139 .. 0.80
   2 !   24.8   0.0   6.2e-09   2.8e-05       1     106 []     177     294 ..     177     294 .. 0.81
   3 ?   -3.7   0.0         4   1.8e+04      72      91 ..     308     329 ..     299     340 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgs 49 
                 lr  v+G + ++n++ g+ v +g++l++i  ++t+ + ++ ++a+l++
  CTQ29428.1  70 LRPRVSGYIDKVNYTDGQEVKKGQVLFTID-DRTYRAALEQAQAALAR 116
                 67789************************8.58888777777777765 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 6.2e-09
      HlyD_3   1 tlrApvdGvvvelnveegevvqagde...lleiippdtllveakvpaa...dlgsik.......kkgqkvtlkld..qgsdytlkgkierisptvdakt 84 
                 +++Ap+dG+ + + ++ g+ v+agd+   l +++ ++t+ v++ v++    + + ++       + +q+  +++      +y+ +gk++ ++   +++t
  CTQ29428.1 177 KVTAPIDGRASRALITSGNLVTAGDTasvLTTLVSQKTVYVYFDVDEStylHYQNLArrgqgasSDNQALPVEIGlvGEEGYPHQGKVDFLDNQLTPST 275
                 599***********************99888888899999999887652223344446688888555555555555488899***************** PP

      HlyD_3  85 gaykvevslenpekksiplkpG 106
                 g++++++ l+n+   + +++pG
  CTQ29428.1 276 GTIRMRALLDNS---QRLFTPG 294
                 ***********9...7888877 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 4
      HlyD_3  72 kierisptv..daktgaykvev 91 
                 k + i++++  + ++++y + v
  CTQ29428.1 308 KATLIDDKAvlTDQDRKYVYIV 329
                 4444555333355666665555 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.7e-05     0.075      47      73 .]      72      98 ..      67      98 .. 0.87
   2 ?    1.1   0.0     0.077   3.5e+02      44      69 ..     177     202 ..     175     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.7e-05
                   BSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 47 apkaGvvkeilvkeGdtvevgdllaki 73
                    +++G++ ++ + +G++v+ g++l++i
     CTQ29428.1 72 PRVSGYIDKVNYTDGQEVKKGQVLFTI 98
                   5689********************987 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.077
                    EEEBSSSEEEEEESSTTTEEE-TTCE CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtvevgdl 69 
                    +++ap +G+ +  l+ +G+ v++gd 
     CTQ29428.1 177 KVTAPIDGRASRALITSGNLVTAGDT 202
                    68999999999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       986  (0.0549947); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2957.63
//
Query:       CTQ29429.1  [L=1050]
Description: Efflux pump membrane transporter BepE [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1143.6  10.4          0 1143.4  10.4    1.0  1  ACR_tran   AcrB/AcrD/AcrF family
    1.8e-12   46.8  32.1      4e-10   39.1  14.9    2.5  2  MMPL       MMPL family
    0.00038   19.9  15.5    0.00038   19.9  15.5    2.4  2  SecD_SecF  Protein export membrane protein
  ------ inclusion threshold ------
       0.41    8.7  14.8       0.84    7.6  14.8    1.5  1  Patched    Patched family


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1143.4  10.4         0         0       1    1020 [.       3    1034 ..       3    1035 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1143.4 bits;  conditional E-value: 0
                  -HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEE.TTSEEEEEEEESTT CS
    ACR_tran    1 iikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqS.seglssitltFedg 96  
                  +++ffi+rpifa+vl+++i ++G ++i  lPv+++P++ pp vqv+++ypGa+p+v++++v++plE+a+ng+++++y++S   s+g++  t+tF  g
  CTQ29429.1    3 FSRFFIDRPIFAAVLSILIFITGLIAIPLLPVSEYPDVVPPSVQVRAEYPGANPKVIAETVATPLEEAINGVENMMYMKSVAgSDGVLVTTVTFRPG 99  
                  689********************************************************************************************** PP

                  S-HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHH CS
    ACR_tran   97 tdidiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkl 193 
                  td+d+A++qvqnr+++a+  LPe+v++ gi+ +k+s + +lv+++ s++g+++  ++r++a  ++kd+L+r++GVg++q++G+ e+a+r+wldp+k+
  CTQ29429.1  100 TDPDQAQVQVQNRVAQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPNGKYDSLYMRNYATLKVKDELARLPGVGQIQIFGSGEYAMRVWLDPNKV 196 
                  ************************************************************************************************* PP

                  HCTT--HHHHHHHHHHHSSB-EEEEE......TT-SB-EEEEESB---SHHHHHTSEEE.ETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEE CS
    ACR_tran  194 aklgltltdvvsalkeqnvnvaaGql......egqeeelliraqgqlqsaediekiivk.nqdgskvrlrDvAkVelgaeeerlaatfngkpavlle 283 
                  a+ glt++dvv+a++eqnv+v+aGql      ++++  ++i+aqg+l ++e++++ii+k  qdgs vrlrDvA++e+g+  ++l++++n+k+av+++
  CTQ29429.1  197 AARGLTASDVVTAMQEQNVQVSAGQLgaeplpQESDFLISINAQGRLHTEEEFGNIILKtAQDGSLVRLRDVARIEMGSGSYALRSQLNNKDAVGIG 293 
                  ******************************999999999********************99************************************ PP

                  EEEETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ACR_tran  284 vkklpganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalg 380 
                  +++ pganai+ ++av++k++eL++ +Pe+++ + +yd t fvr si+ Vv+tLlea+vLvvlvv+lFLq++ra++ip+iavP+s++gtf +l++lg
  CTQ29429.1  294 IFQSPGANAIDLSNAVRAKMAELATRFPEDMQWAAPYDPTVFVRDSIRAVVQTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLG 390 
                  ************************************************************************************************* PP

                  --BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  381 fslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlv 477 
                  fslN+l+LfgLvlAiG+vvDdAiVvvEn+er++ee g+ pl+aa+++m+e+ g+++aialvl+avf+P++fl+Gv+G++++qfa+ti++++++s++ 
  CTQ29429.1  391 FSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIEE-GLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAISTVISAIN 486 
                  ***********************************.************************************************************* PP

                  HHCCHHHHHHHHS---STT-CT..........SHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEE CS
    ACR_tran  478 altltPalcallLkerkeekek..........kffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvts 564 
                  +ltl+Pal+allLk++ ++k+           ++fr fnr+f +++++Y+ l++k l +r  v +v+l+ll +  ++f  +p  f+P +d+ +l+  
  CTQ29429.1  487 SLTLSPALAALLLKPHGAKKDLptrlidrlfgWIFRPFNRFFLRSSNGYQGLVSKTLGRRGAVFAVYLLLLCAAGVMFKVVPGGFIPTQDKLYLIGG 583 
                  ******************9988999******99**************************************************************** PP

                  EE-STTB-HHHHHHHHHHHHHHHHTTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSC CS
    ACR_tran  565 vqlppgvsleqtqkvlkqvekilkekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlr 661 
                  v++p+g+sl++t +v++++++i  + + v++++a+ G++  ++t+ pn++ vf  Lkp ++r   +++++++ +++++++++i++   + + p+++ 
  CTQ29429.1  584 VKMPEGSSLARTDAVIRKMSEIGMNTEGVDYAVAFPGLNALQFTNTPNTGTVFFGLKPFDQR---KHTAAEINAEINAKIAQIQQGFGFSILPPPIL 677 
                  ****************************************999*******************...99****************************** PP

                  CCSSSSCEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEE CS
    ACR_tran  662 eletlsgvrselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrv 758 
                  +l++ sg ++ +q+ + g ++ aL+ a+++++ a+ + p+++   s++q+++pql+v++dr+ka++ Gvs+ + + tl+t+lg+syvndf++ gr+ 
  CTQ29429.1  678 GLGQGSGYSLYIQD-RGGLGYGALQSAVNAMSGAIMQTPGMHFPISTYQANVPQLDVQVDRDKAKAQGVSLTELFGTLQTYLGSSYVNDFNQFGRTW 773 
                  **************.********************************************************************************** PP

                  EEEEEE-GGGSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS.-HHHHHHHHHHHCTT..SSTTEEEEEEHHH CS
    ACR_tran  759 kvvvrleedlrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegd.slseaeeavekiakkvklpegvtiewtgqa 854 
                  +v+ +++  +r+s+ed+++l+ rn++g+mvp++++++i+ ++gp+ + r+ng++++ + g++ +++ s+s+a++  e++ k+  lp+g++iewt  +
  CTQ29429.1  774 RVMAQADGPYRESVEDIANLRTRNNQGEMVPIGSMVNISTTYGPDPVIRYNGYPAADLIGDADPRVlSSSQAMTHLEELSKQ-ILPNGMNIEWTDLS 869 
                  **************************************************************998736789***********.9************* PP

                  HHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCH CS
    ACR_tran  855 eqeqeasnsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksl 951 
                   q+   +n++li++++a+ll flvLaalyes+  pl+++l+vP+++++al++++l+g +++v++qvGl++l+Gla+kNail+vefa+el+  +gk +
  CTQ29429.1  870 FQQATQGNTALIVFPVAVLLAFLVLAALYESWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARELEI-QGKGI 965 
                  ******************************************************************************************9.9999* PP

                  HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  952 eeaileaakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlv 1020
                   ea+lea++ RLrPi+MT++a+i G +PL+l++gaG+e++   gi+v++G++ +t+++L+l+Pv+Yv +
  CTQ29429.1  966 MEAALEACRLRLRPIVMTSIAFIAGTIPLILGHGAGAEVRGVTGITVFSGMLGVTLFGLFLTPVFYVTL 1034
                  ******************************************************************987 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1  14.9     9e-14     4e-10     151     302 ..     349     498 ..     332     526 .. 0.83
   2 !   12.8   9.2     9e-06      0.04     138     301 ..     871    1033 ..     836    1046 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 9e-14
        MMPL 151 vtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedreeaviravastgk 249
                  ++v+++++ ++ ++   a ++pl+ v vs++ ++++     +llg+ l+t +l +  vl+i++ +D a+ +v      +++g    +a+ +a++ + +
  CTQ29429.1 349 EAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSI----LYLLGFSLNTLSL-FGLVLAIGIVVDDAIVVVENVERNIEEGLAPLAAAHQAMREVSG 442
                 345555555566678899*******************....5677888888776.688999************************************** PP

        MMPL 250 vvtaaGltvaiamlgLvv...arlpvlaqvGvaialGvlvdvlivlTllPAllvll 302
                  ++a +l++++ ++ +++   ++ ++ +q++v+ia++ ++++  +lTl PAl++ll
  CTQ29429.1 443 PIIAIALVLCAVFVPMAFlsgVTGQFYKQFAVTIAISTVISAINSLTLSPALAALL 498
                 ********9999888777211457899***************************96 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 9e-06
        MMPL  138 rdasdrdlklie.vvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaag 233 
                  ++a++ +++li+  v++++++++L+ +y S   +l ++l v + +l al    ++      + +++ ++   v+l++ +   a+l+v   re   +g
  CTQ29429.1  871 QQATQGNTALIVfPVAVLLAFLVLAALYESWTLPLAVILIVPMTMLSALFG--VWLTG---GDNNVFVQVGLVVLMGLACKNAILIVEFARELEIQG 962 
                  455555555555169******************************999877..55544...5677788888999999999***************** PP

        MMPL  234 edreeaviravastgkvvtaaGltvaiamlgLvv...arlpvlaqvGvaialGvlvdvlivlTllPAllvl 301 
                  +   ea+ +a +   + +++  + +++ ++ L +   a  +v + +G+++  G+l ++l  l l+P + v+
  CTQ29429.1  963 KGIMEAALEACRLRLRPIVMTSIAFIAGTIPLILghgAGAEVRGVTGITVFSGMLGVTLFGLFLTPVFYVT 1033
                  *************************9999999864447788888899999999999999988888877766 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9  15.5   8.4e-08   0.00038      31     186 ..     341     498 ..     333     501 .. 0.78
   2 ?   -0.4   4.2      0.15   6.6e+02      32     148 ..     878     993 ..     853    1033 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 8.4e-08
                 HHHHHHHHHHHHHHHHHHH.HHT-HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHH CS
   SecD_SecF  31 ekavlallialvliliyva.lrFewrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlsl 128
                 + +v+ ll a+vl++++v  +   wr  +  +ia+   v+ t ++l llg+ ++  ++ +l   iG  v+d +vv + v+ n+++        ++ +++
  CTQ29429.1 341 RAVVQTLLEAVVLVVLVVIlFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIEE--GLAPLAAAHQAM 437
                 55667777777666555540455799999999**************************************************988..455556778888 PP

                 HHHHHHHHHTTHH.HHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHHHHHHHH CS
   SecD_SecF 129 nqtLtrtiltslt.tllvvvallllgg...dslkdfalallvGlivgtyssifiasplllll 186
                  +     i++++  +  v v + +l g   +  k+fa+++ +  ++ +++s+ ++ +l++ll
  CTQ29429.1 438 REVSG-PIIAIALvLCAVFVPMAFLSGvtgQFYKQFAVTIAISTVISAINSLTLSPALAALL 498
                 87655.55555541334445555554445599********************9999998876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHHHHHHHHHHT-.HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHH CS
   SecD_SecF  32 kavlallialvliliyvalrFe.wrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlsln 129
                 +a++   +a++l ++++a  +e w ++la+i+ +   ++ ++  + l+g + ++ + ++l +++G   ++ +++ +  re   + + + + e++ ++  
  CTQ29429.1 878 TALIVFPVAVLLAFLVLAALYEsWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFAREL--EIQGKGIMEAALEACR 974
                 3333334455556667777776588888888888788888888888899999999999****************9999997..6667888888888888 PP

                 HHHHHHHHTTHHHHHHHHH CS
   SecD_SecF 130 qtLtrtiltslttllvvva 148
                   L   ++ts+  +   + 
  CTQ29429.1 975 LRLRPIVMTSIAFIAGTIP 993
                 8888888888764433333 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  14.8   0.00019      0.84     658     809 ..     342     498 ..     329     500 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00019
     Patched 658 stiqnivlallcmfvvallfipelitvlvitlsivsidigviGflslWgvdLDpismitiimsiGfsvdlsaHiayafvrsekd..dakeRvvealeal 754
                 +++q+++ a++++++v +lf++   ++++  +++    +g++ +l l g  L  +s+  ++++iG  vd +  +  +  r+ ++   + + + +a+ ++
  CTQ29429.1 342 AVVQTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIEEglAPLAAAHQAMREV 440
                 679999999***************999999999988889******************************99988888888888889999********** PP

     Patched 755 gwPvvqgalSTilgvlvLlf...vdsymvqvFfktvvLvvvigllHgLlilPillslf 809
                   P++  al   +  + ++f   v     + F+ t+ ++ vi+++  L + P l +l+
  CTQ29429.1 441 SGPIIAIALVLCAVFVPMAFlsgVTGQFYKQFAVTIAISTVISAINSLTLSPALAALL 498
                 *******9977666666666222667778889******************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1050 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1000  (0.0557756); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.44
# Mc/sec: 7201.62
//
Query:       CTQ29430.1  [L=159]
Description: Rrf2 family transcriptional regulator, group III [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-13   50.9   0.0    2.3e-13   50.3   0.0    1.3  1  Rrf2      Transcriptional regulator


Domain annotation for each model (and alignments):
>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   1.3e-17   2.3e-13       3      82 ..       2      82 ..       1      83 [. 0.90

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 1.3e-17
                --HHHHHHHHHHHHHHHSSTCC-.B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSHCCCSBHHHHHHH CS
        Rrf2  3 lsskteyalhallyLakeeeeep.vsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakppeeItlldvvra 82
                l+ ++  al+++l  a+ e+ +   +s+ +a   + +ps+++k++  L++ g++ s+ G++G + L +p+++Itl d++  
  CTQ29430.1  2 LDYRFPTALQMVLSVAMAEQMGErSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKITLRDIYLS 82
                566888999999999886665544999***************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1257.19
//
Query:       CTQ29431.1  [L=303]
Description: Transcriptional regulator GbuR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-30  105.9   0.0    2.6e-30  105.4   0.0    1.2  1  LysR_substrate  LysR substrate binding domain
    1.4e-17   63.4   0.4      4e-17   61.9   0.4    1.8  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.057   13.2   0.0    1.8  1  HTH_23          Homeodomain-like domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   4.3e-34   2.6e-30       2     206 ..      93     293 ..      92     295 .. 0.95

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 4.3e-34
                     TTSCEEEEEEEECCCH...HHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGS CS
  LysR_substrate   2 gglrgrLrigapptla...ryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLarg 93 
                     g+ +g+L+i++ +++    +  lp +l++f  ++P+v++ l   +++e+l++++++++Dlai + + + ++++++pL++e++ l++s+ hp +  
      CTQ29431.1  93 GEHSGTLCISTLDSIEtetALSLPVVLRSFSDKFPHVHIKLIIRTPAEQLNGVLNNHIDLAIGSYNSQVHNIISEPLYREQHWLYCSDLHPMFFS 187
                     7899***********9777889************************************************************************9 PP

                     SSECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEE CS
  LysR_substrate  94 epvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyr 188
                     ++++ e++ + pl++     +++ + +  lr++g+  +++ +v++++a l l+++G  i++lp++++ ++++++rl++l   e+ ++++++++++
      CTQ29431.1 188 RQLDKEQISQCPLVT----RSYWNTSD--LRRRGF-SKGSATVETVDAQLLLILSGKYIGYLPEHYAWPWIKENRLRVLLPNEFGFQSPFSAICK 275
                     9**************....66888888..888888.7888*************************************8888888*********** PP

                     TTCCCHHHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidflre 206
                     +gr   p ++af+d+l++
      CTQ29431.1 276 RGRSNEPYLKAFRDLLKK 293
                     ****************87 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.4   6.7e-21     4e-17       1      60 []       9      68 ..       9      68 .. 0.96
   2 ?   -3.0   0.0       1.2   7.3e+03      38      48 ..     193     203 ..     187     205 .. 0.80

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 6.7e-21
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                +rql++f+ava+ +s +rA +eLg+s +a+s ++++LE +lg +L +R  +g++LTe G+
  CTQ29431.1  9 IRQLQVFEAVARLESYSRAQQELGISVSAISNAMSQLEGQLGFTLCQRGRGGFSLTEKGQ 68
                69**********************************************6678*******7 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.2
                 HHHHTS-SEEE CS
       HTH_1  38 EeelgvpLfeR 48 
                 E+  ++pL++R
  CTQ29431.1 193 EQISQCPLVTR 203
                 78889999999 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   9.6e-06     0.057       7      41 ..      11      45 ..       8      51 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.6e-06
      HTH_23  7 RlrillllaeGlsvreIAreLgvsrrTvyrwlkry 41
                 l++  ++a+  s++++ +eLg+s + +++  +  
  CTQ29431.1 11 QLQVFEAVARLESYSRAQQELGISVSAISNAMSQL 45
                5789999999*******************988774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2180.87
//
Query:       CTQ29432.1  [L=316]
Description: guanidinobutyrase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-82  277.7   0.0    1.3e-82  277.4   0.0    1.0  1  Arginase  Arginase family
  ------ inclusion threshold ------
        0.2   11.9   0.1       0.29   11.3   0.1    1.2  1  UPF0489   UPF0489 domain


Domain annotation for each model (and alignments):
>> Arginase  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.4   0.0   1.5e-86   1.3e-82       2     279 ..      36     307 ..      35     308 .. 0.96

  Alignments for each domain:
  == domain 1  score: 277.4 bits;  conditional E-value: 1.5e-86
                 EEEEEEEE--TTTSSSGGGGGHHHHHHHHHHTSBTHCHEETTTTE..SCCSEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHH CS
    Arginase   2 dvallGvPfdaagsgrpGarfGPraireasarleealeynlelgv..leelkivdlgdvavtpvdneevleqieeavaeilkagklpivlGGDHsialg 98 
                 d+a++G+P+d+++s+r+G+r GPr+ir++s ++++   yn+ +g   +++l+++d+gdv++++++  ++++ ie+ +  + +   +p++lGGDH+i+l+
  CTQ29432.1  36 DAAFVGIPLDIGTSQRSGTRYGPRYIRAESVMIRP---YNMATGAapFDSLSVADIGDVPINTYSLLKSVQIIEDYYTGLNSYPLIPLTLGGDHTITLP 131
                 689*******************************9...99999999*****************99999************99***************** PP

                 HHHHHHHHHSTTEEEEEESSS----SSCTTTBSSSTTSHHHHHHHHTSECGCEEEEEEE-STCSH..HHHHHHHTTSEEEEHHHHHHHHHHHHHHHHHH CS
    Arginase  99 ilralaekygkplgvihfDAHaDlrtpetegsgnshGtpfrraaeegllkpkklvqiGirsvdne..eyelakelgirvitmreidelglkavveeile 195
                 ilral +k+g p+g+ih+DAH+D++++   g+++ hGt frra+eegll+ k++vqiG r+  +   ++++  ++g+r ++++++++ +l+ +++e+++
  CTQ29432.1 132 ILRALTKKHG-PVGLIHVDAHTDTNDEM-FGEKIAHGTTFRRAVEEGLLDLKRVVQIGQRAQGYAagDFQWGVDQGFRLVQAEQCWHTSLAPLMAEVRQ 228
                 ********77.7**************99.79*****************************9888878*****99************************* PP

                 HHTCTTSEEEEEEEGGGBBTTTSTSSSS-BSS-B-HHHHHHHHHHHHCHSEEEEEEEE-B-GGGSSTTTHHHHHHHHHHHHHHH CS
    Arginase 196 rvgaeedpvylSfDiDvlDpavaPGtGtpepgGltlrellallrelaeklnlvgaDvvEvnPaldteaeqtarlaarlvrelll 279
                 ++g  ++pvylSfDiD lDp +aPGtGtpe+gGlt+ ++l+++r++++ lnl+gaD+vEv+P++d ++ +t++laa+l++e +l
  CTQ29432.1 229 QMG--DGPVYLSFDIDSLDPIWAPGTGTPEVGGLTSIQALEIVRGCRG-LNLIGADLVEVSPPYDVSG-NTSQLAANLLYE-ML 307
                 **8..57*****************************************.*****************66.************.55 PP

>> UPF0489  UPF0489 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.2e-05      0.29      13      38 ..     131     154 ..     124     177 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.2e-05
     UPF0489  13 aiyraigskklpsdlslvHlDaHpDl 38 
                  i ra+ +k+   ++ l+H+DaH+D+
  CTQ29432.1 131 PILRALTKKH--GPVGLIHVDAHTDT 154
                 5789999999..9************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       235  (0.0131073); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2357.77
//
Query:       CTQ29433.1  [L=287]
Description: hypothetical protein CH1034_280038 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-08   33.8   0.0    3.1e-08   33.3   0.0    1.2  1  AP_endonuc_2  Xylose isomerase-like TIM barrel
     0.0068   16.4   0.0        1.4    9.0   0.0    2.3  2  YobH          YobH-like protein


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   3.5e-12   3.1e-08       3     188 ..      22     190 ..      18     222 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 3.5e-12
                   HHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTTT CS
  AP_endonuc_2   3 aaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlhpGtagagpk 99 
                   ++++ G  g+E + +  v          r+l+ +l++ gl+  ++ ++++   p ++  e+  e+++++l+     a+ L+ ++++l +G       
    CTQ29433.1  22 ELQRVGCCGIEARVPLTVAE-------RRQLADRLQASGLEYIAILFSGGGVLPAQH--ETP-EQHLARLQTRFAEASGLNPRFVNLLAG------- 101
                   55666666666666666666.......5*************************9995..555.789**********************99....... PP

                   SGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTCHHHHHHHHHHTTTTEEEEEEHHHHHHH....TTTHHHHHHHHHGGEEEEEE CS
  AP_endonuc_2 100 gseeeawerlaeslneladyaekegvklalEtlagsgvelgdeelarlldavdspnvgvclDtgHllia....eedvddalraladrikhvHi 188
                    +++  +++ ++ l ++ + a+  g +  +Et+  +  ++  + ++++++++++  ++++ D++H++       +d+ d + a+ dr++hv++
    CTQ29433.1 102 -NDRWPLAQQVDFLGKAHELAAGFGLTCSFETHRATSLYSP-WLTLEIIQQLPQ--LRFTADISHWVVVserlLDDPSDDFSAFIDRVHHVQA 190
                   .5555577788899***********************9999.***********7..************************************9 PP

>> YobH  YobH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0     0.003        27      14      29 ..      56      71 ..      52      81 .. 0.86
   2 !    9.0   0.0   0.00015       1.4      27      48 ..     116     137 ..     110     140 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.003
        YobH 14 wvalLlsGyGvligsk 29
                ++a+L+sG Gvl + +
  CTQ29433.1 56 YIAILFSGGGVLPAQH 71
                9**********97655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00015
        YobH  27 gskenaaGlGLqCqyltargvv 48 
                 +++e aaG+GL C++ t r ++
  CTQ29433.1 116 KAHELAAGFGLTCSFETHRATS 137
                 67899************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2307.79
//
Query:       CTQ29434.1  [L=355]
Description: putative oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-32  113.1   0.0    2.3e-32  112.2   0.0    1.5  1  DIOX_N        non-haem dioxygenase in morphine synthesis N-te
    1.6e-15   57.4   0.0      5e-15   55.8   0.0    1.7  2  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.0   2.6e-36   2.3e-32       1     117 [.      11     134 ..      11     135 .. 0.96

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 2.6e-36
      DIOX_N   1 iPvidlspl.sdd.edraavaeqlreAcrevGffyvvnhgvpeelidelfeaareFFalPeeeKekl..akspsfrGysrlgeektdgkkldwkesfdl 95 
                 +P+id+ +l +dd ++r+ava+++++A+revGffy+++hg++++li+ ++eaa++ FalP+eeK+ +   +s+s++Gy + gee   ++k+d ke+fd+
  CTQ29434.1  11 LPTIDIRDLaGDDlARRQAVADAIGRAAREVGFFYITGHGIDPALIAGVREAAKQIFALPMEEKMNYyiGHSKSHKGYVPEGEEIYGSGKPDHKEAFDI 109
                 79*****999777799***************************************************999999************9999********** PP

      DIOX_N  96 gtelpeddp...agkplegpnqwPe 117
                 g + ++d+p   ag+pl g n wP+
  CTQ29434.1 110 GFQAADDHPlvlAGTPLIGANEWPD 134
                 ***99*******9***********7 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.63   5.7e+03      13      31 ..     103     120 ..      79     152 .. 0.71
   2 !   55.8   0.0   5.6e-19     5e-15       5      99 ..     182     279 ..     179     280 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.63
                   ------..---EEEEEESSSE CS
  2OG-FeII_Oxy  13 hpdpev..ilglgahtdasll 31 
                   h+      ++g++a  d++l+
    CTQ29434.1 103 HK---EafDIGFQAADDHPLV 120
                   33...2447888888888873 PP

  == domain 2  score: 55.8 bits;  conditional E-value: 5.6e-19
                   EEEEEE-S---------EEEEEESSSEEEEEEE-TT---EEEETE.EEE----T.....TEEEEEE-HHHHHHTTS-S----EEE----GTGSEEEE CS
  2OG-FeII_Oxy   5 lvlnyypphpdpevilglgahtdaslltillqddvgglevfkdgk.wlrvppvd.....nslivniGdallflsngryksvlHrVlpvnegerRvsi 95 
                   l+l +yp+  + e+  g+gahtd++++t+ll d+  glev+++++ w++ ppv+     +++++niGd+l++ls g +  + HrV+   ++e R+s 
    CTQ29434.1 182 LRLIHYPFDASVEDVPGIGAHTDYECFTLLLADQ-PGLEVLNEESvWIDAPPVKnaageEAFVINIGDMLEVLSAGTFVATAHRVR-KVPQE-RYSF 275
                   5667779998888899*****************9.9****999999******99999999*************************9.44446.***9 PP

                   EEEE CS
  2OG-FeII_Oxy  96 ayfi 99 
                    +f+
    CTQ29434.1 276 PLFF 279
                   9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2983.07
//
Query:       CTQ29435.1  [L=268]
Description: putative amino acid transporter (ABC superfamily, peri_bind) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-44  151.1   0.0    3.8e-44  150.8   0.0    1.0  1  SBP_bac_3  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   0.0   2.1e-48   3.8e-44       2     222 ..      39     262 ..      38     265 .. 0.94

  Alignments for each domain:
  == domain 1  score: 150.8 bits;  conditional E-value: 2.1e-48
                 EEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   2 rvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaskis 100
                 +vg++ +ypPf+ +d n++++G d+++a  ia+ l+ k +++++++++li ++ ++ +D++i+++++tpeR+++ d   py  +g ++++ k+ a    
  CTQ29435.1  39 KVGMEVTYPPFESYDSNNNIVGLDPEFAALIAQHLQAKPQLIDTKFTSLILGIGKK-YDAVISGMYVTPERQKQADAI-PYALSGASIIALKGGAV--- 132
                 8****************************************************866.********************9.9***********96554... PP

                 CHSSCGCGTTSEEEEETTSHHHHHHHHHHHC........TSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 101 siksladLkgkkvgvqagstaeellkeelkk........gaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplsseeyaiav 191
                 + k+ ++L+g kvg qag+t  + lk++  +         ++i+ef+t +ea qaL ++++ a +   p+++ +v+k+ +  ++ ++  +++ +++i v
  CTQ29435.1 133 QPKTEDELCGVKVGLQAGTTWVTSLKKHSDEwclkngkpAITIQEFPTAPEASQALLSKNIGAQLEIAPAAQIIVDKSRGRLAISSTRLVYPLPLGIYV 231
                 344446**************999999966668888898999********************************************************** PP

                 ETTTHHHHHHHHHHHHHHHHTTHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 192 rkgdseLrkainkalaelkadgtlakisekW 222
                  kg++eL +ai ++la lka+g++a++ +k+
  CTQ29435.1 232 AKGNTELAEAIKATLATLKANGQYAALIKKY 262
                 ******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1889.32
//
Query:       CTQ29436.1  [L=506]
Description: putative amino acid transporter (ABC superfamily, atp_bind and membrane) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-32  111.5   0.0    7.2e-32  110.8   0.0    1.4  1  ABC_tran      ABC transporter
    8.3e-15   55.0  15.2    8.3e-15   55.0  15.2    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne
    8.1e-11   42.3   0.3    2.3e-05   24.3   0.0    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    3.8e-07   29.8   0.3    0.00049   19.6   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
    0.00038   20.1   0.1      0.001   18.8   0.1    1.7  1  AAA_29        P-loop containing region of AAA domain
     0.0012   19.1   0.2     0.0087   16.3   0.0    2.3  2  AAA_22        AAA domain
     0.0021   18.4   0.3     0.0053   17.1   0.1    1.9  1  AAA_16        AAA ATPase domain
     0.0026   17.9   0.0     0.0051   17.0   0.0    1.5  1  AAA_33        AAA domain
     0.0075   16.8   0.1     0.0075   16.8   0.1    1.4  1  AAA_23        AAA domain
     0.0079   16.1   0.0      0.015   15.2   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
     0.0089   15.8   0.0      0.019   14.7   0.0    1.4  1  AAA_30        AAA domain
  ------ inclusion threshold ------
      0.013   14.4   1.5        4.1    6.1   0.2    2.9  2  ABC_ATPase    Predicted ATPase of the ABC class
      0.016   15.1   0.0      0.032   14.1   0.0    1.4  1  ATPase_2      ATPase domain predominantly from Archaea
      0.027   13.6   0.1      0.045   12.9   0.1    1.3  1  NB-ARC        NB-ARC domain
      0.028   14.8   0.0        2.3    8.6   0.0    2.4  2  AAA           ATPase family associated with various cellular 
      0.048   13.4   0.1      0.091   12.5   0.1    1.4  1  AAA_24        AAA domain
      0.057   13.1   0.3        1.5    8.5   0.2    2.0  2  AAA_15        AAA ATPase domain
      0.071   12.6   0.0       0.12   11.8   0.0    1.3  1  PhoH          PhoH-like protein
      0.084   13.4   0.0       0.15   12.6   0.0    1.4  1  AAA_18        AAA domain
       0.09   12.4   0.1       0.16   11.5   0.1    1.4  1  cobW          CobW/HypB/UreG, nucleotide-binding domain
       0.09   12.4   0.0       0.15   11.6   0.0    1.3  1  SRP54         SRP54-type protein, GTPase domain
      0.092   12.5   0.2       0.15   11.8   0.2    1.3  1  PRK           Phosphoribulokinase / Uridine kinase family
      0.098   12.9   0.0        0.2   11.9   0.0    1.5  1  AAA_28        AAA domain
       0.13   12.6   0.0       0.27   11.6   0.0    1.5  1  AAA_19        AAA domain
       0.14   12.0   0.0       0.27   11.2   0.0    1.4  1  NACHT         NACHT domain
       0.17   10.5   0.1        7.6    5.0   0.0    2.0  2  AAA_13        AAA domain
       0.22   11.4   0.2       0.55   10.1   0.1    1.7  2  MobB          Molybdopterin guanine dinucleotide synthesis pr


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.0   1.1e-34   7.2e-32       1     137 []     276     429 ..     276     429 .. 0.88

  Alignments for each domain:
  == domain 1  score: 110.8 bits;  conditional E-value: 1.1e-34
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.......B-HHHCCHCEEEE-SS--S-TTSBHHHH............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxx............. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.......qeleslrkeigvlpqepqlfpeltvren............. 79 
                 lk ++l++++ge++ i+G++G+GK+tL++++  l++ + Gei l g+d  +       ++++   ++ig+++q  +lfp+ tv +n             
  CTQ29436.1 276 LKGIDLQVENGEVISIIGPSGSGKTTLIRTINALESLDGGEIILYGEDYLKggaivdkRQMRAGVRRIGMVFQSFNLFPHRTVLDNvmlapryhqlldq 374
                 7899**************************************9999999999999887778888899**************************999955 PP

                 .HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                   ++e++ ++l+++gl     +  ++ p +LSgGq+qrva+aral+ kp+++l+DEpt+
  CTQ29436.1 375 pVAREQALALLDRVGLLA---HA-HKYPGQLSGGQQQRVAIARALALKPDIMLFDEPTS 429
                 555555555666666555...43.4567*****************************96 PP

>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.9       2.6   1.7e+03     144     171 ..       3      30 ..       1      34 [. 0.76
   2 !   55.0  15.2   1.2e-17   8.3e-15       1     183 [.      35     220 ..      35     222 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.6
  BPD_transp_1 144 ailgydyseisnggvlalviavlllnlv 171
                   + +gy +s+ s+g+++ + + v++++++
    CTQ29436.1   3 FDWGYFFSLFSIGAFWQACVTVIVISTL 30 
                   5678888877788888888888888876 PP

  == domain 2  score: 55.0 bits;  conditional E-value: 1.2e-17
  BPD_transp_1   1 gillGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvf....vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaral 90 
                   g+++G+l+a   l+  ++++  +  +i +++s+P +vl+++++ +     v +  lg  ++++++ ++++ a+y+  i+r++l s+ k++ ea +al
    CTQ29436.1  35 GLVVGFLLAcakLSAPRWVKIPVELYIWFFRSVPLMVLLVFVYNLPqlfpVTQPLLGVPFIAGLVSMTVTEAAYMAEIHRGGLLSVAKGQSEAGHAL 131
                   799**********************************888866544888888899****************************************** PP

  BPD_transp_1  91 GasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprv 183
                     s + i r +v+P+a++  +++li+  + +++ +++l+ +     l  lll+ +  y  ++  + ++la++++++ +++v+ +l r+l+ r+
    CTQ29436.1 132 SFSFIGIQRLIVIPQAFRISLPTLINEYITIIKLSSILSVVS----LPELLLTGQRLYAQNFLVMETLLAVAVYYVMVVTVFTWLFRALENRL 220
                   ******************************************....****************99**************************998 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.2e-05    0.0083       3      24 ..     290     311 ..     288     339 .. 0.81
   2 !   24.3   0.0   3.5e-08   2.3e-05     235     297 ..     399     458 ..     387     464 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllar 24 
                  +iGp gsGK++L++++  l +
  CTQ29436.1 290 SIIGPSGSGKTTLIRTINALES 311
                 59***************88844 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 3.5e-08
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                  +lS G+++  a++ al+  +   ++ l+DEp + L+P+l+ ++l+++ +l+r+g   +++TH
  CTQ29436.1 399 GQLSGGQQQRVAIARALALKP---DIMLFDEPTSALDPELVGEVLKVIQSLAREGMTMLIVTH 458
                 577888888866666666655...*************************************** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0023       1.5      25      44 ..     287     306 ..     272     311 .. 0.85
   2 !   19.6   0.0   7.3e-07   0.00049     126     202 ..     390     463 ..     340     478 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0023
                 SEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAi 44 
                 ++ +i+Gp GSGK+ l+  i
  CTQ29436.1 287 EVISIIGPSGSGKTTLIRTI 306
                 4779************9887 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 7.3e-07
                 HHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
       SMC_N 126 llesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreeml 202
                 ll++a+ ++ +LSgG+++ va+a  +A++   p  ++l+De  +aLD + v +v +++++   + + +++++++ ++ 
  CTQ29436.1 390 LLAHAHKYPGQLSGGQQQRVAIARALALK---P-DIMLFDEPTSALDPELVGEVLKVIQSLAREgMTMLIVTHEMDFA 463
                 34444444559*************99985...4.489**********************877665999****998765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   1.5e-06     0.001       9      44 ..     270     308 ..     269     311 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.5e-06
      AAA_29   9 Wgtfdg.htieidlkg..atlltGpsGsGKSTllDAiqa 44 
                 Wg  +  + i++++++  ++ ++GpsGsGK+Tl+  i+a
  CTQ29436.1 270 WGQHEVlKGIDLQVENgeVISIIGPSGSGKTTLIRTINA 308
                 55555555555555444799*************977666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.3   1.5e+03      57      86 ..     209     238 ..     204     250 .. 0.60
   2 !   16.3   0.0   1.3e-05    0.0087       5      27 ..     286     308 ..     282     316 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.3
      AAA_22  57 lrellralglelkaerlsseellealeqal 86 
                 +++l+ral+++l+ +r++ + l ea  qal
  CTQ29436.1 209 FTWLFRALENRLDIQRKRPQTLSEAECQAL 238
                 566666666666665555555554444444 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.3e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlle 27 
                   ++ ++G+sG+GKTtl+r++  
  CTQ29436.1 286 GEVISIIGPSGSGKTTLIRTINA 308
                 67899**************9865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1     8e-06    0.0053      25      48 ..     287     309 ..     275     461 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8e-06
      AAA_16  25 elvllsGesGvGKsslvrellral 48 
                 e++ ++G+sG+GK++l+r++   l
  CTQ29436.1 287 EVISIIGPSGSGKTTLIRTINA-L 309
                 7899**************9984.3 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.6e-06    0.0051       1      90 [.     288     387 ..     288     420 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.6e-06
      AAA_33   1 lvllvGlpGsGKstlaerl..lkklg...avllssdtlrrrlfgtdqqskt......dytrvldrlyqilnela..rkalsagrnvildatnlsrrera 86 
                 ++ ++G++GsGK+tl++ +  l+ l+    +l  +d+l+    ++++q             v ++++ + ++++  + +l+ +++ +ld++ +++++ a
  CTQ29436.1 288 VISIIGPSGSGKTTLIRTInaLESLDggeIILYGEDYLKGGAIVDKRQMRAgvrrigM---VFQSFNLFPHRTVldNVMLAPRYHQLLDQPVAREQALA 383
                 6779*************97556666699999999999999544444443332332321...22333333333331122456667777777777777766 PP

      AAA_33  87 rflk 90 
                  +++
  CTQ29436.1 384 LLDR 387
                 5555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.1e-05    0.0075      13      40 ..     276     307 ..     261     309 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.1e-05
      AAA_23  13 qe.idF...skgltlItGpNGaGKTTildAik 40 
                  + id+   +  +  I+Gp G+GKTT+++ i 
  CTQ29436.1 276 LKgIDLqveNGEVISIIGPSGSGKTTLIRTIN 307
                 34678888777899**************9885 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.2e-05     0.015      86     127 ..     272     314 ..     248     320 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.2e-05
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinallpelelkt 127
                  ++e l+ +  ++++ +++ ++G+SG GK+tLi +++  ++l  
   CTQ29436.1 272 QHEVLKGIDLQVENgEVISIIGPSGSGKTTLIRTINALESLDG 314
                  56667777777777799***************99987666655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.8e-05     0.019      16      52 ..     285     320 ..     271     324 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.8e-05
      AAA_30  16 sgdrvavltGpAGtGKttalkalreaweaaggrvigl 52 
                 +g  v  + Gp G+GKtt++++++++   +gg++i++
  CTQ29436.1 285 NG-EVISIIGPSGSGKTTLIRTINALESLDGGEIILY 320
                 34.588999**************99988889988875 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.013       8.3     241     265 ..     282     307 ..     270     311 .. 0.84
   2 ?    6.1   0.2    0.0061       4.1     324     413 ..     402     475 ..     397     481 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.013
                 EE-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 241 gipkG.vtlIvGggfhGKsTLLeAle 265
                  + +G v+ I+G+   GK+TL++ ++
  CTQ29436.1 282 QVENGeVISIIGPSGSGKTTLIRTIN 307
                 4667889***************9886 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0061
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEET CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmee 413
                 SG   q ++i++al ++ +++L+DE tsA           elv         +++ +++l ++ g+++++v+  ++  l+++d+v+lme+
  CTQ29436.1 402 SGGQQQRVAIARALALKPDIMLFDEPTSALD--------PELV-------GEVLKVIQSL-AREGMTMLIVTHEMDFALSISDRVVLMEN 475
                 8888899999999999999999999999853........4445.......2234445555.55677777777777777777777777775 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.9e-05     0.032      16      44 ..     282     310 ..     275     324 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.9e-05
    ATPase_2  16 erepneiyfiYGpegsGKtaLlkeiienl 44 
                 + e+ e++ i Gp gsGKt+L++ i    
  CTQ29436.1 282 QVENGEVISIIGPSGSGKTTLIRTINALE 310
                 5678899***************9875444 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   6.8e-05     0.045      21      42 ..     287     308 ..     273     315 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.8e-05
                 EEEEEEESTTSSHHHHHHHHCC CS
      NB-ARC  21 lvvalvGmgGvGKttlakqiln 42 
                  v+++ G  G+GKttl++ i+ 
  CTQ29436.1 287 EVISIIGPSGSGKTTLIRTINA 308
                 49****************9986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0035       2.3       3      18 ..     291     306 ..     289     351 .. 0.87
   2 ?    3.7   0.0      0.11        75      36      98 ..     395     448 ..     370     466 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0035
                 EESSTTSSHHHHHHHH CS
         AAA   3 lyGppGtGKTllakav 18 
                 ++Gp G GKT+l++ +
  CTQ29436.1 291 IIGPSGSGKTTLIRTI 306
                 79***********987 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.11
                 SSSTTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA  36 skyvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                  ky g+ +   ++ ++ a++ a kp i+++DE  +    +          +v + l++++ + +
  CTQ29436.1 395 HKYPGQLSGGQQQRVAIARALAlKPDIMLFDEPTSALDPE----------LVGEVLKVIQSLAR 448
                 578899999999999999999999********77665555..........55555555555555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00014     0.091       4      22 ..     288     306 ..     285     320 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                  i i+Gpsg+GKTtl++++
  CTQ29436.1 288 VISIIGPSGSGKTTLIRTI 306
                 688*************998 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2    0.0022       1.5      21      47 ..     281     310 ..     276     326 .. 0.80
   2 ?    2.6   0.0      0.13        87     323     364 ..     418     458 ..     405     463 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0022
      AAA_15  21 lsee...ltvliGkNnsGKSsilealdlFl 47 
                 l+ e   +  +iG+ +sGK+++++ ++ + 
  CTQ29436.1 281 LQVEngeVISIIGPSGSGKTTLIRTINALE 310
                 3333346999**************998875 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.13
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 k++i l++EP   L p++  ++ k +++la+++    +i TH
  CTQ29436.1 418 KPDIMLFDEPTSALDPELVGEVLKVIQSLAREGM-TMLIVTH 458
                 689******************************8.6777777 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00018      0.12       6      43 ..     269     311 ..     266     322 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
                 SHHHHHHHHHHH....H-SEEEEE--TTSSTTHHH.HHHHHHH CS
        PhoH   6 tkeQkeylealk....kndivfaiGpaGtGKtyla.valavea 43 
                 + +Q+e+l+ ++    + +++ +iGp+G+GKt l  +  a+e 
  CTQ29436.1 269 SWGQHEVLKGIDlqveNGEVISIIGPSGSGKTTLIrTINALES 311
                 5678888888877665778************976303344444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00022      0.15       1      25 [.     289     315 ..     289     351 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00022
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf..g 25 
                 I + G++G+GKttl + ++ ++ +  g
  CTQ29436.1 289 ISIIGPSGSGKTTLIRTINALESLdgG 315
                 6799************99877544541 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00024      0.16       2      21 ..     288     307 ..     287     322 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00024
                 EEEEEESTTCCHHHHHHHHH CS
        cobW   2 vtvltGflGsGKTtLlnhll 21 
                 v+ + G+ GsGKTtL++++ 
  CTQ29436.1 288 VISIIGPSGSGKTTLIRTIN 307
                 67899***********9985 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00023      0.15       3      51 ..     288     339 ..     286     362 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00023
                 EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHH...HHHHHH CS
       SRP54   3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAv...eQLktl 51 
                 vi ++G+ G+GKTt +  + al + +g +++l   D  + +A+    Q+++ 
  CTQ29436.1 288 VISIIGPSGSGKTTLIRTINALESLDGGEIILYGEDYLKGGAIvdkRQMRAG 339
                 7899*********************************999997333455555 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00022      0.15       1      20 [.     288     307 ..     288     314 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00022
         PRK   1 vIgvagsSGaGkttvarkle 20 
                 vI++ g+SG+Gktt+ r+++
  CTQ29436.1 288 VISIIGPSGSGKTTLIRTIN 307
                 8****************997 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00031       0.2       2      21 ..     289     308 ..     288     338 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00031
      AAA_28   2 ivitGgestGKTtlleaLaa 21 
                 i i+G++++GKTtl++ ++a
  CTQ29436.1 289 ISIIGPSGSGKTTLIRTINA 308
                 789************98775 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00041      0.27       9      32 ..     285     308 ..     279     317 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00041
      AAA_19   9 kekvllvtaGpGtGKTrvlkhiva 32 
                 + +v+ ++++ G+GKT+++++i a
  CTQ29436.1 285 NGEVISIIGPSGSGKTTLIRTINA 308
                 567999*************99866 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0004      0.27       2      20 ..     288     306 ..     287     310 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0004
                 CEEEEC-TTTCHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkl 20 
                 ++ + G++GsGKTtL++ +
  CTQ29436.1 288 VISIIGPSGSGKTTLIRTI 306
                 6889************998 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.043        28      21      41 ..     291     311 ..     286     320 .. 0.87
   2 ?    5.0   0.0     0.011       7.6     525     579 ..     417     468 ..     409     476 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.043
      AAA_13  21 iYGwNGaGKTtLSrllrslel 41 
                 i G  G+GKTtL r ++ le+
  CTQ29436.1 291 IIGPSGSGKTTLIRTINALES 311
                 56889***********99975 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.011
      AAA_13 525 gkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkk 579
                  k  i  +D P S LD + +  v   i+s +    +   ++i TH ++f   +++
  CTQ29436.1 417 LKPDIMLFDEPTSALDPELVGEVLKVIQSLA---REGMTMLIVTHEMDFALSISD 468
                 4889**************************9...677778899******887766 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00083      0.55       1      18 [.     288     305 ..     288     315 .. 0.84
   2 ?   -2.8   0.0       8.1   5.4e+03      18      37 ..     441     460 ..     439     464 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00083
        MobB   1 vlgivgksgsGKTtLlek 18 
                 v++i+g sgsGKTtL+  
  CTQ29436.1 288 VISIIGPSGSGKTTLIRT 305
                 689************975 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 8.1
        MobB  18 klipelkarglrvgtiKhah 37 
                 k+i+ l+++g+++ ++ h+ 
  CTQ29436.1 441 KVIQSLAREGMTMLIVTHEM 460
                 89999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 3757.37
//
Query:       CTQ29437.1  [L=242]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-47  160.7   0.1    4.9e-47  160.3   0.1    1.2  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.3   0.1   2.7e-51   4.9e-47       1     185 [.       9     188 ..       9     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: 160.3 bits;  conditional E-value: 2.7e-51
                  HHHHHHHHHHHHTTSSCTTBCEEEEEET..STTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEECECSSSTB-TTHHHHHHHHHH-TT-SEEEEE--H CS
  Aldolase_II   1 eelaeasrllarrglvegtgGniSvrvp..eedsflitpsgvdfeeltaedlvvvdldsgevvegkekggkpssetplHlaiykarpdaravvHtHsp 96 
                  ++la+a+rl a +g+ +  + ++Svr+p  +e +fli+p+g+ f+e+ta++l+vvd++ g+vv g  ++++ s+++++H+a++ ar+da++v+HtH+ 
   CTQ29437.1   9 QQLAAAYRLAALFGWEDTLYTHFSVRLPgdGEPRFLINPFGMMFDEVTASNLIVVDMQ-GKVVAG--DAPANSAGFTIHSAVHMAREDAHCVIHTHTL 103
                  689***********************98888899***********************9.****77..556678************************* PP

                  HHHHHHTCCSTSCHCCSSHHHHC.HSSSEEEEES-SSTTCHHH.HHHHHHHHHHS-SEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHH CS
  Aldolase_II  97 aavalsalagkeglppltqeaaklllgdevpvipyaapgteel.gealaealkedakavllrnHGlltvGetleeAvalaetleeaaeiq 185
                   ++a++a+  ++gl +l+q + +++  ++v++ py+ +  ++  ++++++ l+ ++ a++l++HGll vG+t+++A++ +++l +a+eiq
   CTQ29437.1 104 PGMAVAAC--EDGLLQLNQISTEFY--QRVGYHPYEGVAFDLDeRARIQRSLG-NNIAMILQSHGLLSVGRTVADAFYIMYYLNRACEIQ 188
                  ******99..99***********87..99******997766656799*****8.779********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1830.81
//
Query:       CTQ29438.1  [L=310]
Description: Glyoxylate/hydroxypyruvate reductase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-43  147.4   0.0    3.4e-43  147.1   0.0    1.1  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    4.1e-07   30.3   0.0    6.5e-07   29.6   0.0    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
     0.0032   17.1   0.0     0.0098   15.6   0.0    1.7  1  2-Hacid_dh      D-isomer specific 2-hydroxyacid dehydrogenase
     0.0033   17.1   0.3     0.0056   16.3   0.3    1.3  1  ApbA            Ketopantoate reductase PanE/ApbA
  ------ inclusion threshold ------
      0.012   16.2   0.1      0.029   14.9   0.1    1.7  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
      0.062   12.6   0.0       0.13   11.6   0.0    1.5  1  ThiF            ThiF family
      0.071   13.0   0.0       0.12   12.2   0.0    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
       0.16   11.9   0.1       0.29   11.1   0.1    1.4  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.1   0.0   1.5e-46   3.4e-43       3     178 .]     104     275 ..     102     275 .. 0.94

  Alignments for each domain:
  == domain 1  score: 147.1 bits;  conditional E-value: 1.5e-46
                   HHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC.EECSHHHHHHH-SEEEE- CS
  2-Hacid_dh_C   3 lllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv.elvsleellaesDivslh 98 
                    +l + r++ +a + +r+++w   k ++++  ++  +Gi+GlG+IG  +a+ l+ +g +v +++rs+k+ + +    +   + l+ +l   D +++ 
    CTQ29438.1 104 SVLWFQRHFDRALAHQRTQTW---KLYPQRAAADFHIGIMGLGEIGGYIADQLARLGYRVSGWSRSEKQLAGVT--CYrGEEALDHFLGALDGLINL 195
                   577889***************...99****************************************98655333..3324569************** PP

                   S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  99 lpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   lplt++tr+++ a  +++++ ga+liN++RG+ + +e++l+aL+sg++aga+lDvf +eplp+d+pl+++p+v++tPH+a
    CTQ29438.1 196 LPLTAQTRGILAAPLFNRLPAGAVLINCGRGEHMVNEDVLAALESGQLAGAVLDVFPQEPLPADDPLWRHPQVVITPHMA 275
                   *******************************************************************************8 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   2.9e-10   6.5e-07       2     106 ..     137     240 ..     136     248 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 2.9e-10
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstssped 96 
                    ig++GlG++G  +a +l++ gy+v+++ r+++++  +     ++ e +  ++ +ld  i +++ +++++ ++   l+++l +g++li+++  +   
     CTQ29438.1 137 IGIMGLGEIGGYIADQLARLGYRVSGWSRSEKQLAGVTC--YRGEEALDHFLGALDGLINLLPLTAQTRGILAApLFNRLPAGAVLINCGRGEHMV 230
                    9*****************************988888774..5677888999***************************************988887 PP

                    HHHHHHHHHH CS
  NAD_binding_2  97 trelakelke 106
                    ++++ ++l++
     CTQ29438.1 231 NEDVLAALES 240
                    7777777665 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.4e-06    0.0098      53     134 .]      52     305 ..      35     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.4e-06
                 HHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TT.TTHHHHHHHH................................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx................................................ RF
  2-Hacid_dh  53 aevlealpkLkviaragvGvDnvDldaakerGilVtnvpg.ystesvAElt................................................ 102
                  ++l + p+Lk+i+ a++GvD++  ++++   i +++v +    + + E++                                                
  CTQ29438.1  52 PQLLTRSPGLKLIQAASAGVDHLPPALFASE-IPLCRVIDeDFRHGMFEYAlwsvlwfqrhfdralahqrtqtwklypqraaadfhigimglgeiggyi 149
                 68999******************97777665.9999988745566788888888888888888888888888888888888888888888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  CTQ29438.1 150 adqlarlgyrvsgwsrsekqlagvtcyrgeealdhflgaldglinllpltaqtrgilaaplfnrlpagavlincgrgehmvnedvlaalesgqlagavl 248
                 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                 .........................T-BHHHHHHHHHHHHHHHHHHHTTCCGTTBCS CS
                 .........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 .........................aaTeeaqeniaeeaaenlvaflkgespanavn 134
                                           a+  + e ia++ +en+ +  +g +++n vn
  CTQ29438.1 249 dvfpqeplpaddplwrhpqvvitphMASAASAEVIARQLLENIQRQRRGLPLKNLVN 305
                 888888888888888888888888888888888888888888888888888888876 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3   2.5e-06    0.0056       1      33 [.     137     170 ..     137     176 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.5e-06
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HH CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rl 33 
                 i i+G+G iG+++a +La+ g+ v  + rs+ +l
  CTQ29438.1 137 IGIMGLGEIGGYIADQLARLGYRVSGWSRSEkQL 170
                 79***************************99666 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   1.3e-05     0.029       2      40 ..     137     171 ..     136     177 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-05
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHH CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekae 40 
                    igi G G++g  +a +l++ g   + +  + sr++++++
     CTQ29438.1 137 IGIMGLGEIGGYIADQLARLG---YRVS-GWSRSEKQLA 171
                    9********************...****.99***99886 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.8e-05      0.13      13      42 ..     129     158 ..     113     161 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.8e-05
                 HHHHHTSEEEEE--SHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  13 qekLrdskvllvGaGglGsellknLalsGv 42 
                 q++ +d ++ ++G+G +G +++ +La++G 
  CTQ29438.1 129 QRAAADFHIGIMGLGEIGGYIADQLARLGY 158
                 55667899********************96 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.6e-05      0.12       1      36 [.     136     171 ..     136     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.6e-05
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseeale 36 
                 +++++G G +G  ia ++a+ g++V    +se++l+
  CTQ29438.1 136 HIGIMGLGEIGGYIADQLARLGYRVSGWSRSEKQLA 171
                 589***************************999987 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00013      0.29       2      36 ..     137     171 ..     136     181 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                     EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHH CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaenghevrlwvreeelie 36 
                     i+++G G  G  +A  la+ g +v+ w+r+e+++ 
      CTQ29438.1 137 IGIMGLGEIGGYIADQLARLGYRVSGWSRSEKQLA 171
                     89*****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2284.18
//
Query:       CTQ29439.1  [L=264]
Description: Uncharacterized oxidoreductase YvaG [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-43  147.5   0.3    5.3e-43  146.8   0.3    1.3  1  adh_short      short chain dehydrogenase
    1.3e-39  136.2   2.9    3.2e-39  134.9   2.9    1.5  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    1.8e-07   31.3   0.4    3.3e-07   30.4   0.4    1.4  1  KR             KR domain
      0.001   18.6   0.3     0.0024   17.4   0.0    1.7  2  Epimerase      NAD dependent epimerase/dehydratase family
     0.0025   17.7   0.8      0.047   13.6   0.2    2.1  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
  ------ inclusion threshold ------
      0.022   15.3   3.1       0.11   13.1   0.3    2.5  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.8   0.3   1.8e-46   5.3e-43       1     190 [.       8     195 ..       8     200 .. 0.97

  Alignments for each domain:
  == domain 1  score: 146.8 bits;  conditional E-value: 1.8e-46
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsels 97 
                 kv+lvt  ++GIG aiak la++Ga+v++ +rse+ ++++++ l++e  gaka ++ +D++d++ + +l++++     ++d+LvnNAGi g+++f  ++
  CTQ29439.1   8 KVALVTASTAGIGFAIAKGLAESGAEVILNGRSEQSVNAAIARLQNEvpGAKARPAIADLSDADGAAQLLRAV----TGVDILVNNAGIYGPQDFYATD 102
                 89********************************************************************999....9********************* PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short  98 eeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 +++w+++ ++N+++ + l+r +lpam+++ +Gr+v++sS  +++  a ++ Y+ +K a  +l+r lak +a +g++vn+v PG++ +d  +e 
  CTQ29439.1 103 DATWDNYWQTNVMSGVRLSRGLLPAMVSKGWGRVVFISSESARNIPADMIHYGVTKTAQLSLARGLAKYVAGSGVTVNSVLPGPTISDGFAEM 195
                 ************************************************************************************988876665 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   2.9   1.1e-42   3.2e-39       4     233 ..      17     259 ..      13     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 1.1e-42
                   TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefd 96 
                    gIG+aiAk lae Gaev+l  ++e++ ++++++l++e++ + +    +D +d +  ++l ++v     ++Dilvnnagi  +  ++f  t+++ +d
    CTQ29439.1  17 AGIGFAIAKGLAESGAEVILNGRSEQSvNAAIARLQNEVPGAkArpAIADLSDADGAAQLLRAV----TGVDILVNNAGIYGP--QDFYATDDATWD 107
                   7*************************************98553666888888888888777765....689************..************ PP

                   HHHHHHTHHHHHHHHHHHH.HCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTT...... CS
  adh_short_C2  97 raldvnlyslfllakaalp.lmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikg...... 184
                   +  ++n+ s ++l++ +lp ++ +g g++v +ss +a+ + ++  +yg++K a  +l+r lA+ ++  g++vN+v pgp+  +  a+ +k+      
    CTQ29439.1 108 NYWQTNVMSGVRLSRGLLPaMVSKGwGRVVFISSESARNIPADMIHYGVTKTAQLSLARGLAKYVAGSGVTVNSVLPGPTISDGfAEMLKDevaktg 204
                   *******************5445559*********9988888888**********************************877653444444433332 PP

                   ......HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 185 ......fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                         ++++   ++ ++ ++r++++ eva+++++ +s++as+++G+ l vDgG+
    CTQ29439.1 205 qsleelAKAFVMTHRPSSVIQRAASVAEVANMVVYVCSPQASATSGAALRVDGGV 259
                   221111112222334567799*********************************7 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.4   1.1e-10   3.3e-07       4     153 ..      11     158 ..       9     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.1e-10
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT..T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal..gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 l+t  + g+G ++a+ lae+ga+ ++l +Rs   +++ +a ia+l++   ga+ + + aD+sd+d  ++ll++++     +   ++ Ag+   + +  +
  CTQ29439.1  11 LVTASTAGIGFAIAKGLAESGAE-VILNGRS---EQSVNAAIARLQNEvpGAKARPAIADLSDADGAAQLLRAVT----GVDILVNNAGIYGPQDFYAT 101
                 89999****************96.789****...4455668888888777************************7....7999**************** PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanYaaaN 153
                 +++++++  +  v     L + l +    +    +v++SS ++    a   +Y  + 
  CTQ29439.1 102 DDATWDNYWQTNVMSGVRLSRGLLPamvsKGWGRVVFISSESARNIPADMIHYGVTK 158
                 ********9999988888877554434445566677777776666666666665555 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   7.9e-07    0.0024       2     117 ..      11     143 ..      10     170 .. 0.79
   2 ?   -2.0   0.1      0.64   1.9e+03      57      79 ..     212     235 ..     206     239 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 7.9e-07
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHHH.T-SEEEE--S---HHHHHHSHHHHHH.. CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfkee.qpdavihlAavggvaassedpadfie.. 89 
                 lVt  t  iG a++k l+e g evi   r +++ n a  +          +   +dl d++  ++l++ + ++d+ ++ A++ g+++   +  ++++  
  CTQ29439.1  11 LVTASTAGIGFAIAKGLAESGAEVILNGRSEQSVNAAIARLQnevpgakaRPAIADLSDADGAAQLLRAVtGVDILVNNAGIYGPQDFYATDDATWDny 109
                 677777789**************9999999888887655544889*****99*********9999999999**********888877777666655411 PP

                 ..HHTHHHHH....HHHHHHHHTCTEEEEEEEGG CS
   Epimerase  90 ..knlqgtln....lleaarkagvkrllflsSse 117
                   +n++  ++    ll a+  +g  r++f+sS +
  CTQ29439.1 110 wqTNVMSGVRlsrgLLPAMVSKGWGRVVFISSES 143
                 1167665555111156677788888999999965 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.64
                 HHHHHHHT-SEEEE--S.---HHH CS
   Epimerase  57 erlfkeeqpdavihlAa.vggvaa 79 
                 ++++ +++p  vi  Aa v+ va+
  CTQ29439.1 212 KAFVMTHRPSSVIQRAAsVAEVAN 235
                 456667799999999998888865 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   1.6e-05     0.047      10      75 ..      19      85 ..       8      93 .. 0.79
   2 ?    2.7   0.0     0.033        99      11      73 ..     165     233 ..     163     241 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
                CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-.HHHHCCCHHCEEEES-HHH CS
     3HCDH_N 10 mGagiaavfasagleVvlvdiseealekalekieksleklvekgklk.eeeveaalarisfttdlee 75
                +G  ia+ +a++g eV l  +se+++++a +++++++  ++++ ++   ++++ a++ +++ t ++ 
  CTQ29439.1 19 IGFAIAKGLAESGAEVILNGRSEQSVNAAIARLQNEVPGAKARPAIAdLSDADGAAQLLRAVTGVDI 85
                6888999******************************999999998843556666666666665555 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.033
                 HHHHHHHHHHTT-EEEEE-S.......-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-H CS
     3HCDH_N  11 GagiaavfasagleVvlvdi.......seealekalekieksleklvekgklkeeeveaalarisfttdl 73 
                  +g+a+ +a +g++V+ v          +e l++  +k  +sle+l+++  ++ +  +++++r    +++
  CTQ29439.1 165 ARGLAKYVAGSGVTVNSVLPgptisdgFAEMLKDEVAKTGQSLEELAKAFVMT-HRPSSVIQRAASVAEV 233
                 67999999999999998876334422244444444444444666665544444.5555555555544444 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   3.6e-05      0.11      10      53 ..      19      58 ..       9      74 .. 0.84
   2 ?    2.2   0.2      0.09   2.7e+02      36      74 ..     204     246 ..     162     259 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-05
                   HHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECE CS
  F420_oxidored 10 mgealasgllaagaqpheivvansrnpekaeelaeelgvkvtav 53
                   +g+a+a+gl+++g    e++  n r++++++++ ++l+ +v + 
     CTQ29439.1 19 IGFAIAKGLAESG---AEVI-LNGRSEQSVNAAIARLQNEVPGA 58
                   8************...****.88********9999988555554 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.09
                    CCCHHHHHHHHC.....-EEECECHHHHHHH-SEEEE-S-HHHH CS
  F420_oxidored  36 pekaeelaeelg.....vkvtavdneeaaeeadvvvlavkpedv 74 
                     +++eela+++       +v++  ++ +ae a++vv  + p++ 
     CTQ29439.1 204 GQSLEELAKAFVmthrpSSVIQ-RAASVAEVANMVVYVCSPQAS 246
                    3444555555445556445555.788888888888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1944.57
//
Query:       CTQ29440.1  [L=206]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.3    9.8   6.6       0.33   11.7   1.0    2.3  2  TMEM220   Transmembrane family 220, helix


Domain annotation for each model (and alignments):
>> TMEM220  Transmembrane family 220, helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.5     0.046   8.3e+02      31      31 ..      38      38 ..       7      89 .. 0.53
   2 ?   11.7   1.0   1.8e-05      0.33      16      99 ..      97     188 ..      94     192 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.046
     TMEM220 31 l 31
                +
  CTQ29440.1 38 V 38
                1 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 1.8e-05
     TMEM220  16 elWvtvYllaallcl.laalgaa.....vkesslaralalllllaallla.lawlakleavllnes.mkaekleiEegREflGllilllaml 99 
                 ++W+++ + a++l l l  l+++     + +++ +  +++  lla+l+++ l  ++ l++ +l+e      k  +Eeg E++G +++l+a+l
  CTQ29440.1  97 WVWFALLATAGSLLLpLRHLRQTlsqlaEYTRTPYYGMMISGLLAILVFSrLFGMHGLWYAVLEENyARVVKNTVEEGSESFGYMLCLTATL 188
                 66666666666655555555554333322244445555555555555555555556666666666655556699*************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1688.03
//
Query:       CTQ29441.1  [L=253]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-46  156.9   0.1    6.1e-46  156.6   0.1    1.0  1  SBP_bac_3  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.1   3.4e-50   6.1e-46       1     209 [.      32     240 ..      32     249 .. 0.95

  Alignments for each domain:
  == domain 1  score: 156.6 bits;  conditional E-value: 3.4e-50
                 EEEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   1 lrvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpvswdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 l+vgv +dy+P  ++++ gel+G+dvd+a+++ + lg+kv fv++sw +l + l++ k+Dia++++t tp+R++ +++s+p   +g   l++ ++a + 
  CTQ29441.1  32 LKVGVPGDYAPLAFRNAAGELQGYDVDMARDLGRTLGLKVSFVYTSWPALAADLQADKFDIAMGGVTETPARAQAFALSHPVVANGKIALANCQAAPRL 130
                 79*****************************************99*******************************************99999888888 PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE..ECGGCECEEEEEEETTTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv..eeplsseeyaiavrkgds 196
                  s++++ d ++ kv+v  g t+++++ e+ k +a+i++++++ + lqaL+++ +d +v+d +   y++ k+p+  +v+   + + ++++ ++++ k+++
  CTQ29441.1 131 GSLEKI-DRPDVKVVVNPGGTNQSFVDEHIK-QAQIIRVQNNVDNLQALRQKTADMMVTDLIEGDYYQSKEPGVFCVANetPFAGTASNKVYMMSKDNP 227
                 888877.668889**************9776.9*********************************************999999999************ PP

                 HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxx RF
   SBP_bac_3 197 eLrkainkalael 209
                 +L+k++n++l++ 
  CTQ29441.1 228 ALLKKVNQWLDSQ 240
                 **********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1903.80
//
Query:       CTQ29442.1  [L=233]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-13   48.0   0.0    1.2e-12   47.2   0.0    1.4  1  GerE      Bacterial regulatory proteins, luxR family


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   6.6e-17   1.2e-12       3      56 ..     173     226 ..     172     227 .. 0.97

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 6.6e-17
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                 L+k+E + L ++++G+ nk+IA++ ++S+  ++ +++ni++KLnv++ + l+++
  CTQ29442.1 173 LTKQEDSLLPYIISGLNNKKIAQATDLSNMMISHYRRNIYQKLNVRNIAGLYHF 226
                 9*************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1835.78
//
Query:       CTQ29443.1  [L=182]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-17   63.3   0.8    3.6e-17   63.1   0.8    1.1  1  Fimbrial    Fimbrial protein
  ------ inclusion threshold ------
       0.26   11.6   3.2       0.95    9.8   0.6    2.7  2  Invasin_D3  Invasin, domain 3


Domain annotation for each model (and alignments):
>> Fimbrial  Fimbrial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.8     4e-21   3.6e-17       2     152 ..      28     180 ..      27     182 .] 0.80

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 4e-21
                 EEEEEE..E-SSSEEEHHHSS...EEEEEEEETGGSBST..EBEEEEEEEEEEE.E-TT..THSEEEEEEE.E-BSSTTTTEB--BSST.TT-SSEEEE CS
    Fimbrial   2 nfngtistraatCeitagtpa...tVdfpkisvqelnng..egsrsapfeiqvq.Cssggqnaigiqvsss.gsaaaqspnllltssgasalatgVGIr 93 
                  f+gti  ++++C++ +g ++   +V+++ +++++l+n    + +++ ++i+v+ C+ g  +   +  + s + a  ++  +l  ++     a++VGI+
  CTQ29443.1  28 YFSGTI--VNSSCKLASGNNDgliEVKMGAVPLSKLKNDtnGTGPEVGVNISVKdCDEG--TYYIVLDGASaTEAPITNVLALDAGNPT---AKKVGIK 119
                 5999**..***********99******************9888899*************..3333333444255555555555555554...78***** PP

                 EEETTSSB.E-BSSS-.....EE--EEECSEE.EEEEEEEEEEES..SBEESSEEEEEEEEEEE CS
    Fimbrial  94 lydsngtalltlnaav.....sgspvestalsrssitftAslkklpggtptaGrvnAtAtvvvk 152
                 l+d n+t+ +tl++ +     + ++v+++ +   +++++A+++  ++++++aG+ nAtA +++ 
  CTQ29443.1 120 LTDRNNTP-VTLDKPFdpnvdPRITVNADGT--GTFNLKAYYYTWDKDNAEAGDGNATARFTII 180
                 ********.9999999874454445555444..5699***********************9985 PP

>> Invasin_D3  Invasin, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.6   0.00011      0.95      49      80 ..      69     104 ..      20     122 .. 0.73
   2 ?    2.3   0.3     0.024   2.1e+02      21      67 ..     113     155 ..     104     179 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00011
  Invasin_D3  49 g....tlsavtdngdGtytatLtattagtatitptv 80 
                 g    +  +v+d+++Gty  +L +++a +a it  +
  CTQ29443.1  69 GpevgVNISVKDCDEGTYYIVLDGASATEAPITNVL 104
                 2433355689**************999999888665 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.024
  Invasin_D3  21 tstltvtlkDangnpvsglt.vtfsttsagtlsavtdngdGtytatLt 67 
                 ++ + ++l+D n+ pv+ ++    + +       +t n+dGt t  L+
  CTQ29443.1 113 AKKVGIKLTDRNNTPVTLDKpFDPNVD-----PRITVNADGTGTFNLK 155
                 456677788888887654331222222.....3344555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1460.04
//
Query:       CTQ29444.1  [L=222]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-39  133.2   0.2      1e-38  132.0   0.0    1.6  2  PapD_N           Pili and flagellar-assembly chaperone, PapD 
    1.3e-07   31.8   0.1    3.4e-07   30.5   0.1    1.8  1  PapD_C           Pili assembly chaperone PapD, C-terminal dom
  ------ inclusion threshold ------
       0.16   11.9   0.0       0.27   11.2   0.0    1.4  1  2H-phosphodiest  Domain of unknown function (DUF1868)


Domain annotation for each model (and alignments):
>> PapD_N  Pili and flagellar-assembly chaperone, PapD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.0   1.7e-42     1e-38       2     124 ..      20     135 ..      19     136 .. 0.92
   2 ?   -1.7   0.0      0.43   2.6e+03      14      38 ..     149     174 ..     141     189 .. 0.64

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 1.7e-42
                 EEESSSEEEEETTSSEEEEEEEE-SSS-EEEEEEEECTTSSSTCCSSCS.SEEEESSEEEE-TTEEEEEEE.EE.SS---SSS-EEEEEEEEEE----- CS
      PapD_N   2 vviggtrviynadekeasvtvkNtgkepylvqswvddgdeeaedekakaspfvvtPPlfrlepgeeqvlRi.vtagkklpkdrEslfwlnvkeiPpkkk 99 
                 ++i+++rviy++++k+as++++N+++++y+vq+w+d+g e      ++  p+v+tPPl++l p+++ +lR+ ++ g+ lp+drEslfw+n++e+Pp + 
  CTQ29444.1  20 ITIDASRVIYSGKDKSASLKINNRSSKNYIVQTWLDTGPE----TPSNGLPIVATPPLVKLRPEQSAQLRFiYS-GTGLPADRESLFWVNIQEVPPAP- 112
                 89***********************************444....3444559********************555.*********************98. PP

                 .TCEEEEEEEEEEEEEEEEEEETTS CS
      PapD_N 100 kkekknklqlalrsriklfyrPagl 124
                   e +n lq+a+r+r+klfyrP+g+
  CTQ29444.1 113 --EGNNILQFAIRTRLKLFYRPQGI 135
                 ..679******************97 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.43
                 TSSEEEEEEEE-SS.S-EEEEEEEEC CS
      PapD_N  14 dekeasvtvkNtgk.epylvqswvdd 38 
                 ++++ +++ +N++  +  +++++  d
  CTQ29444.1 149 QQSANTLSFTNNSPlHITVINAEAID 174
                 56777888888887555555555444 PP

>> PapD_C  Pili assembly chaperone PapD, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.1   5.6e-11   3.4e-07       2      62 ..     158     216 ..     157     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 5.6e-11
                 EE-SSS-EEEEEEE.EEETTEEEEEEEEEE-TTEEEEETT--S--TT-EEEEEEE-TTS-EE CS
      PapD_C   2 kNptPYyvtfssle.vkgggkslaleagmvaPfssatfakkaapaagatvsftvINDyGgiv 62 
                 +N++P ++t+ ++e ++++gk ++l++ m+ P+s++ +   + ++ +   ++++INDyG++v
  CTQ29444.1 158 TNNSPLHITVINAEaIDNKGKIYPLKNFMLLPYSHHAV---NIASMQRLHKMKYINDYGAVV 216
                 7*********88872577788899999***********...77777777789*******987 PP

>> 2H-phosphodiest  Domain of unknown function (DUF1868)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.5e-05      0.27      29      96 ..     138     206 ..     121     214 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.5e-05
                      HHHHHHHHHHTSGGGGGEEE--GGG-EEEEEEE.EETT--STTSS-TTS-TT--HHHHHHHHHHHGGG- CS
  2H-phosphodiest  29 avlaireklqaspeadklallPpsSlHmTvfeg.vieerrktdlWpadLpldaplqkitallaerLeqf 96 
                      ++ ++ e+lq ++ a+ l ++ +s lH+Tv++  +i+++ k     +++ l ++ ++++ + ++rL+++
       CTQ29444.1 138 SLPKAVENLQWQQSANTLSFTNNSPLHITVINAeAIDNKGKIYPLKNFMLLPYSHHAVNIASMQRLHKM 206
                      56678899**********************985255555555555566666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1733.67
//
Query:       CTQ29445.1  [L=845]
Description: Outer membrane protein; export and assembly of type 1 fimbriae [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.5e-176  585.9  23.2   1.2e-175  585.6  23.2    1.1  1  Usher      Outer membrane usher protein
    2.1e-31  108.9   0.0    6.4e-31  107.3   0.0    1.9  2  PapC_N     PapC N-terminal domain
    3.9e-14   52.2   0.9    1.3e-13   50.5   0.0    2.4  3  PapC_C     PapC C-terminal domain
  ------ inclusion threshold ------
      0.016   15.1   0.3      0.048   13.6   0.1    1.9  2  Pertactin  Pertactin


Domain annotation for each model (and alignments):
>> Usher  Outer membrane usher protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  585.6  23.2  2.6e-179  1.2e-175       1     551 []     177     749 ..     177     749 .. 0.98

  Alignments for each domain:
  == domain 1  score: 585.6 bits;  conditional E-value: 2.6e-179
                 EEEEEEEEEETTEEEEEEE..EEEEEE----EEEEEEEEEEEEETTTTEEEEEEEEE--SSSS---EEEEEEEEE-GGGS-CCCCCEEEEEEEEESSSE CS
       Usher   1 ylnlqsGlNlgaWrLrsdsqlswsksegnenkwkssrtylqraipqlkskLtlGesytssdiFdsvsfrGvsLasddnmlPdslrgyaPevrGiArtnA 99 
                 yl+l+sG+N+  WrLr++    w+k +g+++kw+s+ ++++++i++++s+L++G+++t++++Fdsv+frGv+L +d +m P+s+ g+aP++rG+A++nA
  CTQ29445.1 177 YLSLNSGINIASWRLRNNA--YWNKFSGQADKWQSIASWAETNIIPWRSRLVVGQTSTDNSVFDSVQFRGVQLGTDAEMRPSSQTGFAPVIRGVANSNA 273
                 6899***************..****************************************************************************** PP

                 EEEEECTTEEEEEEEE-SEEEEE-S---TTTTCEEEEEEEETTS-EEEEEEEE---TT---TT-EEEEEEEEEEE-SSTTB---EEEEEEEEEE-GGGE CS
       Usher 100 kVtirqnGyviYqtlVppGpFeiqdlnptsssgdLdVtveEadGsvqeftvpyasvplllreGqvrYklaaGryrsnnsqqekpffiqaevsyGlpngl 198
                 +V++rqn+y+iY+++Vp+GpFe++d++  + sgd  Vtv EadGs+++ftv y+++p+l r Gq +Y+l+aG+y++  ++   p ++q+++syGl+n++
  CTQ29445.1 274 RVEVRQNNYLIYSENVPAGPFELNDISAVNRSGDFYVTVIEADGSQTTFTVAYTTLPQLVRAGQWNYQLSAGKYHDG-ADGYAPALMQSSLSYGLNNTF 371
                 ****************************************************************************9.799****************** PP

                 EEEEEEEEESSEEEEEEEEEEEEETTEEEEEEEEEEEEEETTSEEEEEEEEEEEEEE-B-TTSEEEEEEEEEEE-TT---HHHHSBSSEE-........ CS
       Usher 199 tlYgGlllaedYqAlalglgknlgelGalSvdvtqsrskldkqskekGqsyrlsYakslnetgtniqlagyrystkgfvtlsdaldarkke........ 289
                 tlYgG+l ae+Y+A a+g+g nlge+GalS+d t + ++l+++++++G s+r+ Yaks+ +++t++q+agyryst g+++lsda+++r++         
  CTQ29445.1 372 TLYGGALAAENYRAGAFGVGSNLGEIGALSADYTLAGTTLANGQRKQGGSVRFLYAKSFLSSKTDFQIAGYRYSTAGYYSLSDAVNERRRWhnglyend 470
                 ***************************************************************************************966599****** PP

                 ................---EETTS-EEEEEEEEEEEEESSSEEEEEEEEEEEESSS--EEEEEEEEEEEEETTEEEEEEEEEEE-SSS-SEEEEEEEEE CS
       Usher 290 ................kdennltnnkkeklqlnvsqslgdygslylsgsrqtYwktsqknknlqlsyntnigrvsvslslsaskseneneeddllslnl 372
                                 + + +  +nkk+++ ++  q+lg+++ ++l+ s+q+Yw++s+++ +lq+++n++i +v++ l ++ ++s+  ++ d+++ l +
  CTQ29445.1 471 ywpsdedeswqasapqHYYTSWFYNKKHRFDISARQTLGKNSAFFLNFSQQNYWNSSGSDISLQAGFNSTIHNVNYGLYYQNTRSHFTHD-DNSITLRV 568
                 **************9666667788999*************************************************************96.******** PP

                 EEESGGGS-T.EEEEEEEEEESSSTEEEEEEEEEEES.STTEEEEEEEEEEESTSS-EEEEEEEETSSEEEEEEEEEESSEEEEEEEEEEEEEEETTEE CS
       Usher 373 SiPlgrllsr.anasysltrnnsgktssetgvsgtll.ddnlsYsvnaglssdgkeslsanlsyqasygevslsysysrdysqlnlslsGgvvahakGv 469
                 SiP++  ++r +n+++ l +++s+ ts ++gv+gtll d +ls+ v+  +++++  ++sa+l y ++yg++  +y ys++ +q++l+lsGgvvah+ Gv
  CTQ29445.1 569 SIPFTLQEDRrINTAFTLAHSKSSGTSGQAGVNGTLLdDGRLSWAVTSAYDDTSLSTNSASLGYLGQYGNLYTGYAYSKSHRQASLNLSGGVVAHRGGV 667
                 ******988889*************************99************************************************************ PP

                 EEES---SSEEEEE-TT-TS-BBTTSTT-B--TTSEEEES---TTS-EEEEB-GGGS-TTEEES-SEEEE-B-TT-EEEEE- CS
       Usher 470 tlsqelgdtrvlikadgvagvrvenqtgvktdrrGyavvpyltpYrenrveldtnklpedvelentvaqvvpteGAvvkaeF 551
                 tlsq+lg+t++l++a++++gv +enqtgv++d +Gyavvp+  pYr n+v+l++++ +  +++ n+va +vpt+GA+ +++F
  CTQ29445.1 668 TLSQPLGSTFALVEAKDAQGVGIENQTGVRIDPFGYAVVPQSVPYRVNSVALNPQDFDTFLDVPNAVADTVPTRGAITRVRF 749
                 ********************************************************************************98 PP

>> PapC_N  PapC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.0   1.4e-34   6.4e-31      13     145 ..      36     162 ..      26     163 .. 0.88
   2 ?   -3.7   0.0       2.4   1.1e+04      98     116 ..     555     573 ..     546     579 .. 0.75

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 1.4e-34
                 HHHHHHHH.HTT-SS-SEEEEEEEEETTEEEEEEEEEEEECCTCCCEEEE-BHHHHHHTTB-GGGSCCGHHTSTTSC--HHHHSTT-EEEEETTTTEEE CS
      PapC_N  13 snvdlsrF.skgnavlpGeYrvdvyvNgkeigrqevefkaekkkkklepcltrelleqlgvkleklpelakaqeeeCvdlsalipgasvkfdlakqrLd 110
                 + + +++F +++++v+pG+Y+v++y+N+  ++++ v+f++++ +++l+pcl+ + + ++gvk++   ++    +++C  ls++i +a+ ++d+a+ rL 
  CTQ29445.1  36 DPLAFNQFvASDGDVMPGTYDVNIYINDLLVDSRPVRFSEDSAHGGLAPCLSAAEYIRYGVKID---DD----HQPCFALSQTIRQAEQQLDIANHRLI 127
                 44456666245599************************************************33...32....236*********************** PP

                 EE--GGGBSTTSTTSSXCCGSBSXTTEEEEEEEEE CS
      PapC_N 111 lsiPqaalknsargyvspeewdeGinaallnYnan 145
                 + iPq+++++ +r+yvsp ++deGinaa++nY+++
  CTQ29445.1 128 IHIPQQYIEHYPRDYVSPMRFDEGINAAFVNYSYS 162
                 *********************************97 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.4
                 -EEEEETTTTEEEEE--GG CS
      PapC_N  98 asvkfdlakqrLdlsiPqa 116
                 ++++ d ++ +L++siP  
  CTQ29445.1 555 SHFTHDDNSITLRVSIPFT 573
                 4566788888999999965 PP

>> PapC_C  PapC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.7   7.4e+03      26      44 ..     299     317 ..     295     319 .. 0.79
   2 ?   -3.2   0.1       1.8   7.9e+03      23      37 ..     627     641 ..     622     642 .. 0.74
   3 !   50.5   0.0   2.9e-17   1.3e-13       1      61 [.     758     818 ..     758     821 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.7
                 -EEB-CCCEEEEECE-SEE CS
      PapC_C  26 vgiVgqgGqvylrglpdqg 44 
                 ++ V  +G  y++ ++  g
  CTQ29445.1 299 ISAVNRSGDFYVTVIEADG 317
                 6789999999999998776 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.8
                 SSS-EEB-CCCEEEE CS
      PapC_C  23 ngkvgiVgqgGqvyl 37 
                 + ++g+ gq G++y 
  CTQ29445.1 627 SASLGYLGQYGNLYT 641
                 3447999****9995 PP

  == domain 3  score: 50.5 bits;  conditional E-value: 2.9e-17
                 EEEEEETTTEE--TT-EEEETTSSS-EEB-CCCEEEEECE-SEEEEEEES-SSTTSEEEEE CS
      PapC_C   1 lltltradGkplPfGAevtdeengkvgiVgqgGqvylrglpdqgtLtvkwgegssqqCras 61 
                 l++ t adG+  P+GA+++ +++ ++g Vg gG+vy++g++   +L+ kwge+ +q+C+++
  CTQ29445.1 758 LIHTTLADGSYPPLGAQLYRASGISNGLVGPGGEVYVSGVDSGEKLQMKWGETHQQSCEIT 818
                 68899****************88889********************************987 PP

>> Pertactin  Pertactin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   1.1e-05     0.048      67     113 ..     298     346 ..     267     350 .. 0.80
   2 ?   -3.9   0.0       2.8   1.2e+04      84      96 ..     577     589 ..     571     614 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
   Pertactin  67 ntgsepesgdakltlvkteggdaaFtlankg..gkVdlGtyeYelakdk 113
                 +  +  +sgd  +t+++ +g++++Ft+a +     V +G ++Y+l++ k
  CTQ29445.1 298 DISAVNRSGDFYVTVIEADGSQTTFTVAYTTlpQLVRAGQWNYQLSAGK 346
                 555667899999***************97643389**********9865 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.8
   Pertactin  84 teggdaaFtlank 96 
                 +   ++aFtla  
  CTQ29445.1 577 DRRINTAFTLAHS 589
                 4556778888753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 6075.18
//
Query:       CTQ29446.1  [L=342]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-13   49.0   1.3    3.1e-11   43.7   0.1    2.2  2  Fimbrial  Fimbrial protein


Domain annotation for each model (and alignments):
>> Fimbrial  Fimbrial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.2    0.0023        41      13      54 ..      28      74 ..      20     159 .. 0.84
   2 !   43.7   0.1   1.8e-15   3.1e-11       9     153 ..     200     341 ..     191     342 .] 0.80

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0023
                SSEEEHHHSS.EEEEEEE...ETGGSBST.EBEEEEEEEEEEEE-TT CS
    Fimbrial 13 tCeitagtpa.tVdfpki...svqelnng.egsrsapfeiqvqCssg 54
                tC++t++t + +V++ +i   s +el ++ +  +s p++ +++C+ +
  CTQ29446.1 28 TCKTTSSTISeVVNIESIikvSSSELIANkKIWVSSPITATFSCEDT 74
                9*******999999987622245777777899999999999999988 PP

  == domain 2  score: 43.7 bits;  conditional E-value: 1.8e-15
                 .E-SSSEEEHHHSS.EEEEEEEETGGSBSTEBEEEEEEEEEEE.........E-TT..THSEEEEEEEE-BSSTTTTEB--BSST.TT-SSEEEEEEET CS
    Fimbrial   9 traatCeitagtpa.tVdfpkisvqelnngegsrsapfeiqvq.........CssggqnaigiqvsssgsaaaqspnllltssgasalatgVGIrlyds 97 
                 +r+ +C +t + +  +++f++i++ + + g  +++ pf++++          C +       +  ++s++   q++  +l++ ++     g+GI ++++
  CTQ29446.1 200 IRTMACVPTVSISPsEINFGDIPAGNARPGYYEKTRPFTVTYGlvkqgngsdCGTE-----PMLATFSTTNTIQESAIILPQPDS-----GFGIAISPN 288
                 58999***9998778********988888855555566666655577777777777.....444456688888888888888886.....*******99 PP

                 TSSB..E-BSSS-EE--EEECSEE.EEEEEEEEEEES..SBEESSEEEEEEEEEEEE CS
    Fimbrial  98 ngta.lltlnaavsgspvestalsrssitftAslkklpggtptaGrvnAtAtvvvky 153
                  +   l+ +na +  +  +  +l+   +t+tA l +l+  tp+ G+++AtA ++v++
  CTQ29446.1 289 ASMHpLIEMNAPIHFTLATGATLA---STYTAGLLWLS-RTPKLGPFSATAKITVTF 341
                 988899999998776666666666...79********7.9***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2657.43
//
Query:       CTQ29447.1  [L=364]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 3017.34
//
Query:       CTQ29448.1  [L=851]
Description: outer membrane usher protein, type 1 fimbrial synthesis [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.3e-183  610.5  20.8   3.9e-183  610.3  20.8    1.1  1  Usher     Outer membrane usher protein
    4.8e-41  140.2   0.0      1e-40  139.1   0.0    1.6  1  PapC_N    PapC N-terminal domain
      1e-18   66.9   0.4    8.1e-18   64.0   0.0    2.7  2  PapC_C    PapC C-terminal domain


Domain annotation for each model (and alignments):
>> Usher  Outer membrane usher protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  610.3  20.8  6.5e-187  3.9e-183       1     550 [.     208     752 ..     208     753 .. 0.97

  Alignments for each domain:
  == domain 1  score: 610.3 bits;  conditional E-value: 6.5e-187
                 EEEEEEEEEETTEEEEEEE..EEEEEE----EEEEEEEEEEEEETTTTEEEEEEEEE--SSSS---EEEEEEEEE-GGGS-CCCCCEEEEEEEEESSSE CS
       Usher   1 ylnlqsGlNlgaWrLrsdsqlswsksegnenkwkssrtylqraipqlkskLtlGesytssdiFdsvsfrGvsLasddnmlPdslrgyaPevrGiArtnA 99 
                 ylnl+sGlNlgaWrLr+ s++++ +++    +w++++t+lqr++ +lks L++G++yt +d+Fds++frGv+L sdd+mlPds+rg+aP++rG+A++nA
  CTQ29448.1 208 YLNLRSGLNLGAWRLRNISSMQYGQQR---RHWDTQSTWLQRDVRSLKSLLRIGDTYTTGDVFDSIQFRGVQLMSDDEMLPDSQRGFAPTIRGVAHSNA 303
                 79*****************55555555...57******************************************************************* PP

                 EEEEECTTEEEEEEEE-SEEEEE-S---TTTTCEEEEEEEETTS-EEEEEEEE---TT---TT-EEEEEEEEEEE-SSTTB---EEEEEEEEEE-GGGE CS
       Usher 100 kVtirqnGyviYqtlVppGpFeiqdlnptsssgdLdVtveEadGsvqeftvpyasvplllreGqvrYklaaGryrsnnsqqekpffiqaevsyGlpngl 198
                 kVt++q+GyviY+t+V+pG+F+i+dl+pts+sgdL+V+v+E++G+v++ft+py++vp++lreG+ +++l+aGry+s +++  +p f q+++ yGl++g+
  CTQ29448.1 304 KVTVSQHGYVIYETFVSPGAFAISDLYPTSQSGDLEVKVTESNGAVRTFTQPYSAVPYMLREGRGKFSLSAGRYHSGGESVRSPEFLQGTLFYGLTAGF 402
                 *************************************************************************************************** PP

                 EEEEEEEEESSEEEEEEEEEEEEETTEEEEEEEEEEEEEETTSEEEEEEEEEEEEEE-B-TTSEEEEEEEEEEE-TT---HHHHSBSSEE----EETTS CS
       Usher 199 tlYgGlllaedYqAlalglgknlgelGalSvdvtqsrskldkqskekGqsyrlsYakslnetgtniqlagyrystkgfvtlsdaldarkkekdennltn 297
                 tlYgG++la+dYqA+alglg+ +ge+G+l  dvtq+ ++++ +++++G+s+r++Y+k++ ++gt ++la+yrys++g++ +++a   +    + + + +
  CTQ29448.1 403 TLYGGTQLARDYQAWALGLGRGFGEFGSLGGDVTQAVTRTPSGKRYTGHSLRAQYQKNFVSSGTAFSLASYRYSSSGYYDFAEASALE----SAQGQVD 497
                 ************************************************************************************9888....3466777 PP

                 -EEEEEEEEEEEEESSSEEEEEEEEEEEESSS--EEEEEEEEEEEEETTEEEEEEEEEEE-SSS-SEEEEEEEEEEEESGGGS-TEEEEEEEEEESSST CS
       Usher 298 nkkeklqlnvsqslgdygslylsgsrqtYwktsqknknlqlsyntnigrvsvslslsaskseneneeddllslnlSiPlgrllsranasysltrnnsgk 396
                 n++ + +l+vsqslg+ gsl +s++ q+Yw++++ ++ ++l+++++++++s+ + + ++++  ++++d++ s+n++iPlg  ls + +sy++t++++g 
  CTQ29448.1 498 NRRRREELSVSQSLGGLGSLAVSAWSQEYWHRQSRDETVHLGFYSAWKGISWGVGYYYTRTSGQQKNDRSWSFNINIPLGGPLSDSAVSYNTTSDSNGY 596
                 777888999************************************************************************9999************** PP

                 EEEEEEEEEEES.STTEEEEEEEEEEESTSS-.EEEEEEEETSSEEEEEEEEEESSEEEEEEEEEEEEEEETTEEEEES---SSEEEEE-TT-TS-BBT CS
       Usher 397 tssetgvsgtll.ddnlsYsvnaglssdgkes.lsanlsyqasygevslsysysrdysqlnlslsGgvvahakGvtlsqelgdtrvlikadgvagvrve 493
                 ts+++ ++g +  + nl Ysv++g+ ++g+ s  sa+l+y++ +g+++++y ++  ++ql+++  G+vvah +Gvt++q+ g+++++++a+g+agv v+
  CTQ29448.1 597 TSQQMSLYGAVPtRPNLFYSVQQGYGNQGRGSnSSASLDYHGGFGNAQIGYRHDAASNQLTWGGAGSVVAHPHGVTFGQTVGESFAIVRAPGAAGVAVQ 695
                 **********999*****************999****************************************************************** PP

                 TSTT-B--TTSEEEES---TTS-EEEEB-GGGS-TTEEES-SEEEE-B-TT-EEEEE CS
       Usher 494 nqtgvktdrrGyavvpyltpYrenrveldtnklpedvelentvaqvvpteGAvvkae 550
                 n ++v+td+rGyavvp+lt Yr+n + ldt+++ +d ++++  ++v+p  GAvv a+
  CTQ29448.1 696 NGNNVHTDWRGYAVVPSLTAYRKNVITLDTESMADDTDVDQQGQTVIPGGGAVVMAN 752
                 ******************************************************987 PP

>> PapC_N  PapC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1   0.0   1.7e-44     1e-40       1     145 [.      46     191 ..      46     192 .. 0.96

  Alignments for each domain:
  == domain 1  score: 139.1 bits;  conditional E-value: 1.7e-44
                 EXXCCCCTTX..TTHHHHHHHHHTT-SS-SEEEEEEEEETTEEEEEEEEEEEECCTCCCEEEE-BHHHHHHTTB-GGGSCCGHHTSTT.SC--HHHHST CS
      PapC_N   1 eFnpdfLegs..sasnvdlsrFskgnavlpGeYrvdvyvNgkeigrqevefkaekkkkklepcltrelleqlgvkleklpelakaqee.eCvdlsalip 96 
                 +F+p++Le    ++++ dl +F+k + ++pG+Y+v ++vN++e+g+ +++f++  ++++l+p+lt+ +l ++gv+++++p+ ++ +e+ + +++++ ip
  CTQ29448.1  46 YFDPAALEFAdpQQQTSDLHYFAKPGGQQPGTYPVTLVVNDQELGQADITFVD--DGGQLRPVLTPGQLAEYGVNVSAFPAFQALHEGeTFTRIEKFIP 142
                 7******999899999***********************************98..7**************************9999885669******* PP

                 T-EEEEETTTTEEEEE--GGGBSTTSTTSSXCCGSBSXTTEEEEEEEEE CS
      PapC_N  97 gasvkfdlakqrLdlsiPqaalknsargyvspeewdeGinaallnYnan 145
                 +as +f +a+qrL+lsiPqaa++ ++rgyv+p++wd+G++aa+++Y ++
  CTQ29448.1 143 DASSRFSFANQRLTLSIPQAAMNVQSRGYVDPSRWDDGVPAAFVDYYFS 191
                 **********************************************998 PP

>> PapC_C  PapC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.41   2.5e+03      18      35 ..      84     103 ..      79     103 .. 0.73
   2 !   64.0   0.0   1.4e-21   8.1e-18       1      65 [.     762     831 ..     762     832 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.41
                 EEETTSSS..-EEB-CCCEE CS
      PapC_C  18 vtdeengk..vgiVgqgGqv 35 
                 v d+e g+  ++ V++gGq+
  CTQ29448.1  84 VNDQELGQadITFVDDGGQL 103
                 555555557689******95 PP

  == domain 2  score: 64.0 bits;  conditional E-value: 1.4e-21
                 EEEEEETTTEE--TT-EEEETTSSS....-.EEB-CCCEEEEECE-SEEEEEEES-SSTTS.EEEEEEE-- CS
      PapC_C   1 lltltradGkplPfGAevtdeengk....v.giVgqgGqvylrglpdqgtLtvkwgegssq.qCrasytlp 65 
                 l+tl+ a+G plPfGA++++ e+++    + g+V++gGqvyl+g+p++gtL v+w  ++++ +C+++++lp
  CTQ29448.1 762 LFTLRNAQG-PLPFGASARLVEEEEsgnpSgGMVADGGQVYLSGVPQEGTLAVSWIVNNQSqSCTLHFHLP 831
                 79****999.********9998888999*56************************75555527*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5801.92
//
Query:       CTQ29449.1  [L=220]
Description: periplasmic pilin chaperone (lpfB-like) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-42  142.8   0.1    6.3e-42  142.4   0.1    1.1  1  PapD_N    Pili and flagellar-assembly chaperone, PapD N-termi
    3.6e-17   62.5   0.3    7.8e-17   61.4   0.3    1.6  1  PapD_C    Pili assembly chaperone PapD, C-terminal domain


Domain annotation for each model (and alignments):
>> PapD_N  Pili and flagellar-assembly chaperone, PapD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4   0.1     7e-46   6.3e-42       1     124 [.      21     139 ..      21     140 .. 0.94

  Alignments for each domain:
  == domain 1  score: 142.4 bits;  conditional E-value: 7e-46
                 EEEESSSEEEEETTSSEEEEEEEE-SS.S-EEEEEEEECTTSSSTCCSSCS.SEEEESSEEEE-TTEEEEEEE.EE.SS---SSS-EEEEEEEEEE--- CS
      PapD_N   1 gvviggtrviynadekeasvtvkNtgk.epylvqswvddgdeeaedekakaspfvvtPPlfrlepgeeqvlRi.vtagkklpkdrEslfwlnvkeiPpk 97 
                 g+v+ggtrviy+++++ea+++v+N ++ +pylvqswv++    ae++ka+  pf+vtPPlfrl+p++++vlRi +  g++lp+drEs+fwlnvk i p+
  CTQ29449.1  21 GIVMGGTRVIYQEGKREAAISVTNADThTPYLVQSWVEN---YAENDKARV-PFIVTPPLFRLDPEQNNVLRInFI-GASLPRDRESVFWLNVKSIAPT 114
                 699************************9***********...456778888.*********************888.*********************9 PP

                 --.TCEEEEEEEEEEEEEEEEEEETTS CS
      PapD_N  98 kkkkekknklqlalrsriklfyrPagl 124
                 +  +++ nklq++++s+ k+fyrP+ l
  CTQ29449.1 115 P--QGEVNKLQVNIKSKFKIFYRPNDL 139
                 9..5889*****************987 PP

>> PapD_C  Pili assembly chaperone PapD, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.3   8.8e-21   7.8e-17       1      62 [.     161     215 ..     161     216 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 8.8e-21
                 EEE-SSS-EEEEEEEEEETTEEEEEEEEEE-TTEEEEETT--S--TT-EEEEEEE-TTS-EE CS
      PapD_C   1 VkNptPYyvtfsslevkgggkslaleagmvaPfssatfakkaapaagatvsftvINDyGgiv 62 
                 V NptPY+v+f  +ev+g++ + +   gmvaPf+++t+    + ++++tv++++INDyGg++
  CTQ29449.1 161 VINPTPYFVSFYAVEVGGQSIDDP---GMVAPFGEKTW----PVSGHGTVKWRAINDYGGVS 215
                 56***************9988877...6**********....99****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1712.64
//
Query:       CTQ29450.1  [L=193]
Description: putative fimbrial-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-17   63.8   3.7      2e-17   63.8   3.7    1.5  2  Fimbrial  Fimbrial protein
    1.4e-07   31.8   3.7    1.4e-07   31.8   3.7    1.6  2  FimA      Type-1 fimbrial protein, A


Domain annotation for each model (and alignments):
>> Fimbrial  Fimbrial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2      0.53   4.8e+03      70      84 ..      22      36 ..      13      41 .. 0.64
   2 !   63.8   3.7   2.3e-21     2e-17       2     153 ..      45     192 ..      44     193 .] 0.80

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.53
                SSTTTTEB--BSST. CS
    Fimbrial 70 aaqspnllltssgas 84
                +a+ +n+++++sg s
  CTQ29450.1 22 QATAANTINPDSGTS 36
                455577777777765 PP

  == domain 2  score: 63.8 bits;  conditional E-value: 2.3e-21
                 EEEEEE..E-SSSEEEHHHSS.EEEEEEEETGGSBST.EBEEEEEEEEEEE.E-TT..THSEEEEEEEE-BSSTTTTEB--BSST.TT-SSEEEEEEET CS
    Fimbrial   2 nfngtistraatCeitagtpa.tVdfpkisvqelnng.egsrsapfeiqvq.CssggqnaigiqvsssgsaaaqspnllltssgasalatgVGIrlyds 97 
                  fng+i  ++++C+++++++  +Vd++k+  + +  +   +++ pf+i+v+ C+       +++v + g+ + ++ +ll  ++gas    gV+I+ly+ 
  CTQ29450.1  45 IFNGSI--TDSSCNVDSSSNGqKVDLGKWASNYFTGTgFETTKTPFHIKVKdCPAS---VTTVAVLFDGARDQSDNSLLAINGGAS----GVAIKLYEH 134
                 599999..***********879************999988999************9...567888555888888888888888875....********* PP

                 TSSB.E-BSSS-...EE--EEECSEE..EEEEEEEEEEES..SBEESSEEEEEEEEEEEE CS
    Fimbrial  98 ngtalltlnaav...sgspvestalsr.ssitftAslkklpggtptaGrvnAtAtvvvky 153
                 + ++ + l++++     +p +s+ +   +  +f A +++++ +t+taG+++ tA++++ y
  CTQ29450.1 135 DRSTAVSLGKTSakqTVTPGTSGGT-GsADLEFYADYISTA-ATVTAGKADGTANFNMIY 192
                 9888444444442322333333333.235688********6.**************9988 PP

>> FimA  Type-1 fimbrial protein, A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.32   2.9e+03      19      33 ..      44      58 ..      24      81 .. 0.57
   2 !   31.8   3.7   1.6e-11   1.4e-07      12     143 .]      79     193 .]      70     193 .] 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.32
        FimA 19 tvfdvkltectsald 33
                 +f+  +t+ +  +d
  CTQ29450.1 44 VIFNGSITDSSCNVD 58
                344444444333322 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 1.6e-11
        FimA  12 vGetaGltvfdvkltectsaldGaqvklffesGssvdyvsgnlkaiaadaaGveqvqllkadnvqanldgsaiflGkdkaaqdvqtflvsetiGsdtyg 110
                 +G  +  t+f +k+ +c+ ++    v ++f+  ++ d   + l ai+  a+Gv  ++l + d        +a+ lGk  a q v       t G+ + +
  CTQ29450.1  79 TGFETTKTPFHIKVKDCPASVT--TVAVLFD--GARDQSDNSLLAINGGASGV-AIKLYEHDRS------TAVSLGKTSAKQTVT----PGTSGGTG-S 161
                 5667889************997..5788887..67899***********9997.69******99......99************9....99****99.* PP

        FimA 111 atlrylaqyiasGassivaGnlksqvgfsvaye 143
                 a l + a yi + a ++ aG    + +f ++y+
  CTQ29450.1 162 ADLEFYADYISTAA-TVTAGKADGTANFNMIYN 193
                 **********8865.669************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1577.74
//
Query:       CTQ29451.1  [L=73]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 634.06
//
Query:       CTQ29452.1  [L=506]
Description: aldehyde dehydrogenase B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.1e-162  539.9   0.0   4.6e-162  539.7   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  539.7   0.0  2.6e-166  4.6e-162       6     461 ..      32     493 ..      27     494 .. 0.96

  Alignments for each domain:
  == domain 1  score: 539.7 bits;  conditional E-value: 2.6e-166
                 SSE.EEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHH CS
      Aldedh   6 set.ievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyae 102
                 s++ + +++P++g++ia++p+++a d+d a++aA++a +aw k+++++R+++L ++ad +e++ e la +e++++Gkp++e+ + +++ a+d++ry+a+
  CTQ29452.1  32 SGEfFMNTSPVDGSNIAQFPRSDARDIDFALDAAHRAAPAWGKTSVQQRSRLLLQVADRIEQHLEYLAVAESWDNGKPVRETLNaDLPLAVDHFRYFAG 130
                 53448899***************************************************************************99************** PP

                 HHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHH CS
      Aldedh 103 laeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealv 201
                  ++  eg++++++e++ a+ ++ePlGvvg+I+PWNfPll+aawklapalaaGN+vvlKPae+tpls++ll el+ +  +P+gvlnvv+g g+e+geal+
  CTQ29452.1 131 CLRAQEGSTAEIDETTVAYHFHEPLGVVGQIIPWNFPLLMAAWKLAPALAAGNCVVLKPAEQTPLSITLLLELIGD-LFPAGVLNVVQGFGKEAGEALA 228
                 ************99**************************************************************.9********************* PP

                 H-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTS.H.....HHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHH CS
      Aldedh 202 ehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivleda.D.....ldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaak 294
                 ++++++k++ftGst+vgr+i++ aa+n+ ++t+ElGGk+p+i ++d+ D     ++kave++v   f+n+G+vC+++sr+l++esiy+ f++++ e+++
  CTQ29452.1 229 TSKRIAKLAFTGSTPVGRHILACAAENIIPCTVELGGKSPNIYFADVmDgeeefIEKAVEGLVL-GFFNQGEVCTCPSRALIHESIYEPFMARVMEKVA 326
                 ******************************************9998876433444566666665.488******************************* PP

                 T--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT..E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHH CS
      Aldedh 295 klkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGge..reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaN 391
                 +++ gdpld dt +G+++s++q++k+ +y++ a+eeg ++l+Gge     + l++g++++Pt++++ ++dmr +qeEiFGPV+ v++fkde+ea++iaN
  CTQ29452.1 327 QIRRGDPLDTDTMIGAQASRQQFDKILSYIQIAREEGGQILTGGEraAIAPALDNGFYIQPTLIKG-RNDMRSFQEEIFGPVIGVTTFKDEAEALAIAN 424
                 *********************************************987899**************8.******************************** PP

                 SSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEE CS
      Aldedh 392 dteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevkt 461
                 +t++GL+agv+t+d + a r+ + ++aG v+ N+++++ a+a +fgG+kqSg+Gre+ k +l++y ++k+
  CTQ29452.1 425 ETQFGLGAGVWTRDTNLAYRMGRGIKAGRVWTNCYHVYPAHA-AFGGYKQSGVGRETHKMALDAYQQTKN 493
                 ***********************************9999999.*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 4094.16
//
Query:       CTQ29453.1  [L=595]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-57  191.9   0.0      1e-56  191.2   0.0    1.3  1  Sigma54_activat  Sigma-54 interaction domain
    4.5e-16   59.2   0.0    1.5e-15   57.5   0.0    1.9  1  Sigma54_activ_2  Sigma-54 interaction domain
    3.4e-10   39.5   0.4    9.4e-10   38.1   0.4    1.7  1  HTH_8            Bacterial regulatory protein, Fis family
    7.7e-06   26.6   0.3    3.1e-05   24.6   0.1    2.1  2  GAF              GAF domain
     0.0002   21.4   0.0    0.00052   20.0   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0019   17.9   0.4      0.006   16.4   0.4    1.9  1  HTH_30           PucR C-terminal helix-turn-helix domain
     0.0045   16.4   0.0      0.016   14.6   0.0    1.8  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
       0.01   15.6   0.2      0.034   14.0   0.2    1.8  1  HTH_23           Homeodomain-like domain
      0.036   14.1   0.1       0.11   12.6   0.1    1.9  1  HTH_29           Winged helix-turn helix
      0.074   12.9   0.0       0.15   11.9   0.0    1.5  1  AAA_3            ATPase family associated with various cellul
      0.088   13.0   0.1       0.19   12.0   0.1    1.5  1  HTH_17           Helix-turn-helix domain
      0.092   12.5   0.1       0.23   11.2   0.1    1.6  1  HTH_psq          helix-turn-helix, Psq domain
       0.14   11.4   0.0       0.22   10.7   0.0    1.2  1  IFR3_antag       Papain-like auto-proteinase
       0.14   12.1   1.2        0.4   10.7   0.2    2.3  2  HTH_1            Bacterial regulatory helix-turn-helix protei


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.2   0.0   8.1e-60     1e-56      17     166 ..     310     460 ..     302     462 .. 0.95

  Alignments for each domain:
  == domain 1  score: 191.2 bits;  conditional E-value: 8.1e-60
                      HHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE.HHHHHTTTSEEEEETGGGS-HHH CS
  Sigma54_activat  17 kvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk.GlfekadgGtlfLDeigelplel 109
                      ++ +  + + i+Ge+G+GKe+++r++h++s+ ++++fva+ncaaipe+l+eseLFG++ GaFtGA+k+   G++++adgG+lfLDeig++pl+l
       CTQ29453.1 310 RLLNAGIALCIEGETGSGKEYVSRTLHRHSRWRSGKFVAINCAAIPESLIESELFGYQPGAFTGASKNGYiGKIREADGGVLFLDEIGDMPLAL 403
                      5667778899**********************************************************999*********************** PP

                      HHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEE CS
  Sigma54_activat 110 QekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnvie 166
                      Q++Llrvlqe+ev ++G+s++++v++ +i+at+++l++ v++g+fredL++rl+ + 
       CTQ29453.1 404 QTRLLRVLQEKEVAPLGASRSVPVNFALICATHRNLTQRVSAGEFREDLLWRLREYA 460
                      *****************************************************9876 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   1.2e-18   1.5e-15      22     138 .]     316     466 ..     306     466 .. 0.91

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 1.2e-18
                      S-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-HHHHHHH........................TTTSEEEEEE-TT--HHHHHHHHH CS
  Sigma54_activ_2  22 lpvfltGekGsgkelvArlLhknsgpwleifvverlaklpldlleq........................akggtLylkdiadlskaeqkeLle 91 
                        + + Ge Gsgke+v+r+Lh  s   +  fv +++a++p +l+e+                        a+gg+L+l +i d++ a+q++Ll 
       CTQ29453.1 316 IALCIEGETGSGKEYVSRTLHRHSRWRSGKFVAINCAAIPESLIESelfgyqpgaftgaskngyigkireADGGVLFLDEIGDMPLALQTRLLR 409
                      567899*****************999999***********9999988888888888887777777777778*********************** PP

                      HHHH..........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  92 llak..........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      +l++          + + +  l++++ ++l+q + ag+f e Ll +L e +l++PpL
       CTQ29453.1 410 VLQEkevaplgasrSVPVNFALICATHRNLTQRVSAGEFREDLLWRLREYALALPPL 466
                      ***********9875599**************************************9 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.4   7.3e-13   9.4e-10       8      38 ..     556     586 ..     552     589 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 7.3e-13
                 HHHHHHHHHTTT-HHHHHHHHTS-HHHHHHH CS
       HTH_8   8 elIeaALertgGnkskAArlLGisRrtLyrK 38 
                 +lI+++L+r +Gn+s+AA++LGi R+tLyr+
  CTQ29453.1 556 QLIVDTLARVNGNVSRAAQMLGIARSTLYRR 586
                 79****************************9 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   2.4e-08   3.1e-05       2     130 ..      55     188 ..      54     189 .. 0.85
   2 ?   -2.8   0.0       7.3   9.4e+03      35      66 ..     290     322 ..     253     355 .. 0.58

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.4e-08
                 HHHHHHHHHHHHH.HHHTESEEEEEEEEETTE..EE.............CEEEEECCEEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHH CS
         GAF   2 leelldtvveelr.ellgadrvalylpdydGl..hy.............dipqasrwlfmkngrgicgqvlatgqplvipdstpdprfaqynrrdllen 84 
                 l++l++ vve l+ ++ +++ v+++  d dGl  h+              + ++  w++   g++ +g++la ++ + i+     ++f+         +
  CTQ29453.1  55 LQQLAQPVVEALSrQVADLQSVVILS-DPDGLvlHTlgdtqalqkaqrlALAPGNLWSESGRGTNAIGTALAIDDGCEID---GRQHFLT--------R 141
                 7899********97888888888866.89996335598888777777777777777788888999999999999999999...8999999........6 PP

                 TTESEEEEEEEEE.TTEEEEEEEEEESSSCS.HHHHHHHHHHHHHHHH CS
         GAF  85 mgirsslvvPlvn.dgelwGllvlhnpsppf.treelellqvladqva 130
                  +   ++++Pl   dg + G+l++  p + f +++    +++ a q++
  CTQ29453.1 142 NQNLYCAAMPLQRpDGSIAGVLDISGPAN-FpHQHTFGWVKAAAKQIE 188
                 78889*******99************998.99***9999999999985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.3
                 CEEEEECCEEEETTSHHHH...HHHHHSSSEEEST CS
         GAF  35 dipqasrwlfmkngrgicg...qvlatgqplvipd 66 
                   p+a +++f+++ +g      + l+ g +l+i++
  CTQ29453.1 290 SAPPAMHFPFTSPREG--EkllRLLNAGIALCIEG 322
                 4566666666666444..22334555566666665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     4e-07   0.00052       2     120 ..     318     435 ..     317     448 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4e-07
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------..........G-SEEEEESGGG--HHHHHHHHHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraar..........egeilvlDEveraesevlnsLlsll 89 
                 +++ G++G+gK  +++ l +    r+   v+++    +e l+ +  +      +++++++ a +           g +l+lDE+  ++ + + +Ll++l
  CTQ29453.1 318 LCIEGETGSGKEYVSRTLHRHSrWRSGKFVAINCAAIPESLIESELF-----GYQPGAFTGASKngyigkireaDGGVLFLDEIGDMPLALQTRLLRVL 411
                 799*******************8444455555555555555555554.....688888888888888888999************************** PP

                 HSSEEE..-SSSEEE---......-EEEEEE CS
       AAA_5  90 eerrllleeggelvkaknddllerfrviata 120
                  e+++ +  +g   +++ +     f +i ++
  CTQ29453.1 412 QEKEVAP--LGASRSVPVN-----FALICAT 435
                 ****994..4444444333.....5555555 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.4   4.7e-06     0.006       6      36 ..     560     590 ..     558     592 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.7e-06
                 HHHHHTTT-HHHHHHHHTS-HHHHHHHHHHH CS
      HTH_30   6 raylenggnisatAkaLhvHrnTlryRLrri 36 
                 ++  + +gn+s++A+ L++ r Tl+ R  r+
  CTQ29453.1 560 DTLARVNGNVSRAAQMLGIARSTLYRRAARA 590
                 577789*********************8876 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.3   1.7e+03      24      43 ..     317     336 ..     303     337 .. 0.78
   2 !   14.6   0.0   1.2e-05     0.016      89     156 ..     370     435 ..     366     448 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
  Mg_chelatase  24 nlllvGppGsGKtmlakrlp 43 
                    l + G  GsGK  + + l+
    CTQ29453.1 317 ALCIEGETGSGKEYVSRTLH 336
                   57899*******99988775 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.2e-05
  Mg_chelatase  89 alvGggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaam 156
                   a+ G++++   G+i  a  GvLfLDE+ ++       L + l+++ev+   a+++   p +f l++a+
    CTQ29453.1 370 AFTGASKNGYIGKIREADGGVLFLDEIGDMPLALQTRLLRVLQEKEVAPLGASRS--VPVNFALICAT 435
                   67788889999**********************9999999999999987766665..58999999886 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   2.7e-05     0.034      14      37 ..     562     586 ..     554     592 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.7e-05
      HTH_23  14 lae.GlsvreIAreLgvsrrTvyrw 37 
                 la+   +v+++A++Lg+ r+T+yr 
  CTQ29453.1 562 LARvNGNVSRAAQMLGIARSTLYRR 586
                 55456799***************85 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   8.4e-05      0.11      12      31 ..     566     585 ..     549     591 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.4e-05
      HTH_29  12 vstvsqiAkllglsrrtvyr 31 
                  ++vs++A++lg+ r+t yr
  CTQ29453.1 566 NGNVSRAAQMLGIARSTLYR 585
                 569****************9 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.15       4     110 ..     320     436 ..     317     446 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
       AAA_3   4 legvPGlaktllvkalakaldlef.kriqftpdllPsdilGtevfeekekefe..fkkGpv...fa...nllladeinrappktqsalleameerqvtv 93 
                 +eg  G +k  + ++l ++   +  k + +    +P  ++ +e+f  +   f+   k+G +         +l+ dei   p   q+ ll +++e++v+ 
  CTQ29453.1 320 IEGETGSGKEYVSRTLHRHSRWRSgKFVAINCAAIPESLIESELFGYQPGAFTgaSKNGYIgkiREadgGVLFLDEIGDMPLALQTRLLRVLQEKEVAP 418
                 56666666666666666655544313345555556666666666666665554213334331112122258999************************* PP

       AAA_3  94 egethklpepflvl.atq 110
                  g+++++p +f ++ at+
  CTQ29453.1 419 LGASRSVPVNFALIcATH 436
                 **********97652665 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00015      0.19       4      25 ..     569     591 ..     568     592 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
      HTH_17   4 veEaAelLgvsrstvy.rlirrg 25 
                 v+ aA++Lg+ rst+y r +r+g
  CTQ29453.1 569 VSRAAQMLGIARSTLYrRAARAG 591
                 5669************5577777 PP

>> HTH_psq  helix-turn-helix, Psq domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00018      0.23      19      37 ..     569     587 ..     564     592 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
     HTH_psq  19 irkAArkYgiPrsTLwrrk 37 
                 +++AA+  gi+rsTL+rr 
  CTQ29453.1 569 VSRAAQMLGIARSTLYRRA 587
                 68**************875 PP

>> IFR3_antag  Papain-like auto-proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00017      0.22      33     122 ..     130     226 ..     119     264 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
  IFR3_antag  33 cevdgst..lcaecfrgcegm..eqcpglfmgllklaspvpvghkfligwyraakvtgrynflellqhpa...faqlrvvdarlaieeasvfistdh 122
                 ce+dg    l  +    c +m  ++  g + g+l ++ p    h+   gw +aa     y +++   hp    ++  r vd   ++ee  ++ s + 
  CTQ29453.1 130 CEIDGRQhfLTRNQNLYCAAMplQRPDGSIAGVLDISGPANFPHQHTFGWVKAAAKQIEYLWVKQSLHPEqwlMSLHRQVDKLDSVEELLLVFSDNV 226
                 88888642244444445655521566799*************************99999*9999999996332455688998888888766655544 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1         6   7.7e+03      29      38 ..      65      74 ..      64      76 .. 0.84
   2 ?   10.7   0.2   0.00031       0.4      13      33 ..     566     586 ..     558     590 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6
                HHHHHHHHHH CS
       HTH_1 29 avsrqikrLE 38
                a+srq+++L 
  CTQ29453.1 65 ALSRQVADLQ 74
                89****9985 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00031
                 HSSHHHHHHHHTS-HHHHHHH CS
       HTH_1  13 egsftrAAeeLglsqpavsrq 33 
                 +g+++rAA+ Lg++ +++ r+
  CTQ29453.1 566 NGNVSRAAQMLGIARSTLYRR 586
                 68***************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4466.15
//
Query:       CTQ29454.1  [L=302]
Description: LysR family transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-41  140.6   6.8    8.3e-41  139.7   6.4    1.6  2  LysR_substrate  LysR substrate binding domain
    2.6e-17   62.5   3.7    2.9e-17   62.3   1.6    2.2  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.043   13.6   1.8       0.23   11.3   0.2    2.5  2  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.26   1.5e+03     147     166 ..      42      61 ..      36      76 .. 0.77
   2 !  139.7   6.4   1.4e-44   8.3e-41       2     208 ..      89     295 ..      88     296 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.26
                     HTTS-BEEEEGGGHHCCCHT CS
  LysR_substrate 147 aaGlGiallprsavrdelad 166
                     +a lG+al  r + r+ l +
      CTQ29454.1  42 EARLGVALFQRTTRRQLLTE 61 
                     68899999999999888743 PP

  == domain 2  score: 139.7 bits;  conditional E-value: 1.4e-44
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEEEEEEEEEEETTSGGGG.SS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLaeeplvlvaspdhpLar.ge 94 
                     ++ +grLr++ p  +++++++pll r+ +ryP ++lel+ +d  ++++ll+eg +Dla+r g + +  +l+ar L+e  +vl+a++++ L +  +
      CTQ29454.1  89 DEVQGRLRVSLPVLFGQRCVAPLLFRLSQRYPLLKLELHYSD--RQVNLLEEG-FDLAVRIGSLaDTGSLRARALGEHGMVLCAAAEY-LRQqPA 179
                     689***************************************..*********.**********9999********************.999899 PP

                     SECGGGGCTSEEEEESTTST..HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEE CS
  LysR_substrate  95 pvsledLadeplilleegsg..lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvy 187
                     p +++ L +++ + + ++     ++l +   +e +++p+  l  ++++a++a+v++G+Gia+lp+++v+++lad  l+ +  p  ++++++++v+
      CTQ29454.1 180 PQTIAGLNEHRTLGYLHNGQlqKWQLYDPQQGEVRFSPQTWLIQDDFAAIAAAVQQGMGIAWLPDWLVAQALADETLQQVLAPSAQVRFAIHAVW 274
                     99*************8777788888888888899********************************************7777777999******* PP

                     ETTCCCHHHHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflreal 208
                     ++g +l+ ++ra id+lre l
      CTQ29454.1 275 PEGPWLPQKTRAAIDALREGL 295
                     ******************975 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   1.6   4.9e-21   2.9e-17       1      60 []       5      64 ..       5      64 .. 0.97
   2 ?   -1.9   0.0      0.57   3.4e+03      10      29 ..     160     179 ..     158     189 .. 0.55

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 4.9e-21
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l+++ +fv+v+e+g+f+ AA  L+++ +av + i+rLE++lgv Lf+Rt+r+  LTe+Ge
  CTQ29454.1  5 LNAIPVFVTVVESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQLLTEEGE 64
                578889*****************************************************7 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.57
                 HHHHSSHHHHHHHHTS-HHH CS
       HTH_1  10 vaeegsftrAAeeLglsqpa 29 
                 + e+g +  AA e    qpa
  CTQ29454.1 160 LGEHGMVLCAAAEYLRQQPA 179
                 56677555555554444443 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   3.9e-05      0.23      11      53 ..      16      58 ..      11      60 .. 0.90
   2 ?    0.7   0.1     0.078   4.7e+02      31      55 ..      75      99 ..      73     102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.9e-05
                TTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHHHH CS
      HTH_30 11 nggnisatAkaLhvHrnTlryRLrrieellgldlddpddrlaL 53
                ++gn + +A+ Lhv r  + + + r+e  lg+ l +  +r +L
  CTQ29454.1 16 ESGNFASAAAILHVTRSAVGKTIARLEARLGVALFQRTTRRQL 58
                679*****************************99988888776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.078
                HHHHHHHHHHS--TTSHHHHHHHHH CS
      HTH_30 31 yRLrrieellgldlddpddrlaLyl 55
                 R+r +ee l++  d+ + rl+++l
  CTQ29454.1 75 ERIREAEETLQRGKDEVQGRLRVSL 99
                699*********9999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2325.17
//
Query:       CTQ29455.1  [L=201]
Description: NADH-azoreductase, FMN-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-40  137.7   0.0    4.3e-40  137.6   0.0    1.0  1  Flavodoxin_2  Flavodoxin-like fold
    1.1e-08   34.9   0.0    1.4e-08   34.7   0.0    1.1  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.0   4.8e-44   4.3e-40       2     196 ..       3     196 ..       2     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: 137.6 bits;  conditional E-value: 4.8e-44
                   EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTT.TEEEEEEHHCCT-----CCCCHC...CHHHHTT..C.HHHHHHH.HHHHHCSSEEEEEEE-BTT CS
  Flavodoxin_2   2 kiLiinahprpeksfssalaqafvealekagp.hevtvrdLyadflpvlttrdlaa...klayeek..p.adveseq.iekllaadaivlqfPlwwf 90 
                   ++L+++++ ++e s++++l ++f++a ++ag+ ++ t++dL a+ lp l++  +aa   +  +++   + a + s+q i++l+a+d++v+++P++++
    CTQ29455.1   3 NVLVLKSSINGETSLTNQLINEFLAARQAAGHgDRLTEHDLSAMALPTLDRPLFAAlrgA-VDPQPaiReAVALSDQlIAELKASDLLVIGAPMYNL 98 
                   89******************************************************7642.3333346559************************** PP

                   B--HHHHHHHHHHS-TTTSC.EETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHHHHHHHHHTT-EEEEEEEEESCT.CCCH.H CS
  Flavodoxin_2  91 gvPailKgwiDrvltagfaf.yteeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpplrgilgfiGikdvepvlvegva.gaed.e 184
                   +vP  lK+w+D v++a  +f yte    + +g+ +g +a+v++++Gg  +       +g + d ++++lr++lg++Gi+ ve++++eg++  ++  +
    CTQ29455.1  99 NVPTDLKKWFDLVARARETFrYTESW--P-QGLVEGVRAVVVSSRGGI-H-------QGETTDAVTHYLRAVLGLMGIQGVEFIYAEGLDnRPHGrD 184
                   **********************9999..6.56666*************.3.......46699****************************9888889 PP

                   HHHHHHHHHHHH CS
  Flavodoxin_2 185 ealaealerlee 196
                   + +a a++++++
    CTQ29455.1 185 AGIASARAQIAR 196
                   999999999887 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.5e-12   1.4e-08       3     147 ..       4     169 ..       2     177 .. 0.73

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.5e-12
                 EEEEES--S.TT-HHHHHHHHHHCCT-T...T-CEEEEETTTS.--........---HCHGHTCGGSHHH.......HHHHHHHHH-SCEEEEEEECTT CS
     FMN_red   3 ilvisGSlr.kgsntrklaewaaealkea..gaevelidladlilpc......alcdkdlesegqtsddv.......aellekiaaadaliivtPeYng 85 
                 +lv+  S + + s t +l++++++a ++a  g  ++  dl+ ++lp       a++ +       +++++        +l++ ++a+d l+i+ P Yn 
  CTQ29455.1   4 VLVLKSSINgETSLTNQLINEFLAARQAAghGDRLTEHDLSAMALPTldrplfAALRGA----VDPQPAIreavalsDQLIAELKASDLLVIGAPMYNL 98 
                 77776666657799999999999988888774555555666666664443333223322....3344444555678899******************** PP

                 CE-HHHHHHHHCHT-..........SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHHHHHH.HTT-EEEECSE CS
     FMN_red  86 sysgllKnalDrlsr.........trgkkelrgKpvalvavgggrrgglraeeqlrqvla.elgaivvpraa 147
                 +++  lK  +D++ r          +++  ++g  +++v+  gg ++g +++ +  + l+ +lg + +++++
  CTQ29455.1  99 NVPTDLKKWFDLVARaretfryteSWPQGLVEGVRAVVVSSRGGIHQG-ETTDAVTHYLRaVLGLMGIQGVE 169
                 *************99********9999999999999999999886655.55555666665556655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1617.50
//
Query:       CTQ29456.1  [L=99]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-15   56.9   0.0      2e-15   56.4   0.0    1.2  1  HTH_5           Bacterial regulatory protein, arsR family
    5.6e-12   45.0   0.0    8.5e-12   44.4   0.0    1.3  1  HTH_24          Winged helix-turn-helix DNA-binding
      1e-11   44.5   0.3    1.5e-10   40.8   0.1    2.2  2  MarR_2          MarR family
    7.7e-11   41.9   1.1    1.4e-10   41.1   1.1    1.4  1  HTH_20          Helix-turn-helix domain
    1.9e-07   30.9   0.0    3.3e-07   30.1   0.0    1.3  1  MarR            MarR family
    1.2e-05   25.0   0.4    2.7e-05   23.9   0.3    1.7  1  HTH_IclR        IclR helix-turn-helix domain
    1.4e-05   24.9   0.1    2.5e-05   24.2   0.1    1.4  1  HTH_Crp_2       Crp-like helix-turn-helix domain
    2.9e-05   23.8   0.3    4.8e-05   23.1   0.3    1.4  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
    0.00047   20.4   0.0    0.00085   19.6   0.0    1.5  1  Rrf2            Transcriptional regulator
     0.0022   17.8   0.0     0.0043   16.8   0.0    1.5  1  HTH_10          HTH DNA binding domain
     0.0035   17.5   0.0     0.0087   16.2   0.0    1.6  2  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
     0.0047   16.7   0.1     0.0075   16.0   0.1    1.4  1  LexA_DNA_bind   LexA DNA binding domain
  ------ inclusion threshold ------
      0.011   15.6   0.2       0.22   11.5   0.1    2.2  2  HTH_1           Bacterial regulatory helix-turn-helix protein
      0.012   15.6   0.0      0.041   13.8   0.0    1.8  2  HTH_11          HTH domain
      0.015   15.5   0.1      0.029   14.5   0.1    1.4  1  AbiEi_4         Transcriptional regulator, AbiEi antitoxin
      0.017   14.8   0.1      0.043   13.5   0.0    1.6  2  RP-C            Replication protein C N-terminal domain
      0.046   13.9   0.0      0.062   13.5   0.0    1.3  1  HTH_34          Winged helix DNA-binding domain
      0.063   13.8   0.0       0.09   13.3   0.0    1.3  1  HTH_27          Winged helix DNA-binding domain
      0.066   13.1   0.0       0.12   12.3   0.0    1.4  1  TrmB            Sugar-specific transcriptional regulator TrmB
      0.089   12.7   0.0       0.14   12.0   0.0    1.3  1  TFIIE_alpha     TFIIE alpha subunit
       0.09   12.8   0.1       0.41   10.7   0.0    1.9  2  HTH_29          Winged helix-turn helix
      0.095   12.8   0.0       0.22   11.7   0.0    1.6  1  HTH_28          Helix-turn-helix domain
       0.12   12.2   0.1        1.3    8.9   0.0    2.2  2  MerR            MerR family regulatory protein


Domain annotation for each model (and alignments):
>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.0   2.6e-18     2e-15       1      47 []      23      70 ..      23      70 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 2.6e-18
                SHHHHHHHHHHTTSS.EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
       HTH_5  1 dptRlkILklLaege.lcvcelaeelglsqstvShHLkkLreaGLVek 47
                +p Rl IL++L++ + ++++ela+++gls+s++S+HL+++r++GL+++
  CTQ29456.1 23 NPHRLLILCMLCDAPrASAGELARATGLSPSATSQHLARMRDEGLIDS 70
                699************99****************************985 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   1.1e-14   8.5e-12       3      47 ..      24      68 ..      22      69 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 1.1e-14
      HTH_24  3 etdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                  ++ IL+ L + pr s  eLA+++glSps+++++l r+ +eGlI
  CTQ29456.1 24 PHRLLILCMLCDAPRASAGELARATGLSPSATSQHLARMRDEGLI 68
                67899***************************************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.1   1.9e-13   1.5e-10       5      60 ..      24      75 ..      19      77 .. 0.86
   2 ?    1.7   0.0       0.3   2.3e+02      33      46 ..      81      94 ..      80      96 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1.9e-13
                HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSS CS
      MarR_2  5 paqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDk 60
                p  + +L  L ++p+   ++gelar++gls+sa+s++l+r+ + GL+  +++  + 
  CTQ29456.1 24 PHRLLILCMLCDAPR--ASAGELARATGLSPSATSQHLARMRDEGLIDSERD--AQ 75
                667778888888887..9*****************************99988..55 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.3
                SSHHHHHHHHHHHH CS
      MarR_2 33 lsksavsrilkrLv 46
                ++++av+++++ L 
  CTQ29456.1 81 ITHPAVQQVINTLK 94
                799*******9986 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   1.1   1.8e-13   1.4e-10       3      59 ..      17      73 ..      13      75 .. 0.94

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.8e-13
                HHHHHS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECT CS
      HTH_20  3 iaeALahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvre 59
                + +A+++P R+ il +L++a  ++a+ela++ +ls++  s+HL+ +++ gL++++r 
  CTQ29456.1 17 LMKAMSNPHRLLILCMLCDAPRASAGELARATGLSPSATSQHLARMRDEGLIDSERD 73
                559**************************************************9996 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   4.2e-10   3.3e-07       4      53 ..      25      74 ..      23      75 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 4.2e-10
                HHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEET CS
        MarR  4 tqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRsksp 53
                 +++iL++l + + +s  eLa++ g+s+s+++  l r+ ++Gli+++++ 
  CTQ29456.1 25 HRLLILCMLCDAPRASAGELARATGLSPSATSQHLARMRDEGLIDSERDA 74
                5789******************************************9986 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.3   3.4e-08   2.7e-05       8      49 ..      29      69 ..      25      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 3.4e-08
                HHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  8 iLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyve 49
                iL +l  ap++ +  elAr+tgl++S+++ +L+ +  +G++ 
  CTQ29456.1 29 ILCMLCDAPRA-SAGELARATGLSPSATSQHLARMRDEGLID 69
                77777788887.9**************************986 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   3.1e-08   2.5e-05      22      54 ..      39      72 ..      25      85 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.1e-08
                HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilseLkreglis.rg 54
                 +  elA+  Gl+++ +s+ l+++++egli+  +
  CTQ29456.1 39 ASAGELARATGLSPSATSQHLARMRDEGLIDsER 72
                67789**************************633 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.3   6.1e-08   4.8e-05       8      42 .]      29      63 ..      27      63 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 6.1e-08
  HTH_AsnC-type  8 ILeaLqedaRisyaeLAervGlSestvlrRvrrLe 42
                   IL  L   +R+s  eLA+++GlS+s+  + ++r++
     CTQ29456.1 29 ILCMLCDAPRASAGELARATGLSPSATSQHLARMR 63
                   77789999*******************99999996 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.1e-06   0.00085      15      59 ..      28      72 ..      18      75 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.1e-06
                HHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
        Rrf2 15 lyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvr 59
                l+L +  +   +s+ e+a+ +++sps  ++ la++r +gl+ s+r
  CTQ29456.1 28 LILCMLCDAPRASAGELARATGLSPSATSQHLARMRDEGLIDSER 72
                4444444444489******************************98 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.6e-06    0.0043      23      46 ..      38      61 ..      35      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.6e-06
      HTH_10 23 rvtlkeLAkelGIskstlsehLrk 46
                r+++ eLA + G+s+s++s+hL +
  CTQ29456.1 38 RASAGELARATGLSPSATSQHLAR 61
                6899******************87 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.1e-05    0.0087      23      56 ..      39      72 ..      35      75 .. 0.90
   2 ?   -2.1   0.0       6.1   4.8e+03      36      47 ..      83      94 ..      81      95 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.1e-05
                    B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET CS
  Fe_dep_repress 23 vktkdlaerLnvspssVsemlkkLekdGyveyek 56
                    ++  +la++ + sps  s+ l +++++G+++ e 
      CTQ29456.1 39 ASAGELARATGLSPSATSQHLARMRDEGLIDSER 72
                    57789************************99876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6.1
                    HHHHHHHHHHHH CS
  Fe_dep_repress 36 pssVsemlkkLe 47
                     + V++ ++ L+
      CTQ29456.1 83 HPAVQQVINTLK 94
                    578999998875 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   9.6e-06    0.0075      27      64 ..      40      76 ..      36      77 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.6e-06
                   -HHHHHHHHTS-.HHHHHHHHHHHHHTTSEE-GGG-CC CS
  LexA_DNA_bind 27 sireiaralglkSpsaveehLkaLerKGyierdpgkpR 64
                   s  e+ara gl+ psa  +hL++++  G+i+ +  + R
     CTQ29456.1 40 SAGELARATGLS-PSATSQHLARMRDEGLIDSERDAQR 76
                   56799******7.*****************98877666 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00028      0.22      20      40 ..      45      65 ..      37      66 .. 0.92
   2 ?    1.9   0.0      0.28   2.2e+02      24      38 ..      80      94 ..      74      97 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00028
                HHHHTS-HHHHHHHHHHHHHH CS
       HTH_1 20 AeeLglsqpavsrqikrLEee 40
                A++ gls++a s++++r+++e
  CTQ29456.1 45 ARATGLSPSATSQHLARMRDE 65
                999***************985 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.28
                TS-HHHHHHHHHHHH CS
       HTH_1 24 glsqpavsrqikrLE 38
                 +++pav + i++L 
  CTQ29456.1 80 FITHPAVQQVINTLK 94
                479********9996 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   5.3e-05     0.041       5      50 ..      29      72 ..      25      80 .. 0.83
   2 ?   -0.5   0.0       1.6   1.2e+03      31      42 ..      85      96 ..      81      99 .] 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.3e-05
      HTH_11  5 ilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpIesep 50
                il +L +a    s+ eLA+ +++S ++  ++++++++ g  I+se+
  CTQ29456.1 29 ILCMLCDAPR-ASAGELARATGLSPSATSQHLARMRDEG-LIDSER 72
                5556655554.8***************************.888887 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.6
      HTH_11 31 tvrrdIkaLeel 42
                +v++ I +L++l
  CTQ29456.1 85 AVQQVINTLKTL 96
                789999999986 PP

>> AbiEi_4  Transcriptional regulator, AbiEi antitoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   3.8e-05     0.029      15      38 ..      40      68 ..      39      69 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.8e-05
     AbiEi_4 15 ttrelea.aGispsa....lrrLvrkGwL 38
                +  el++  G+spsa    l+r++++G++
  CTQ29456.1 40 SAGELARaTGLSPSAtsqhLARMRDEGLI 68
                56799888*******************98 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.1   1.6e+03     132     148 ..       7      23 ..       5      35 .. 0.73
   2 ?   13.5   0.0   5.5e-05     0.043      72     101 ..      39      68 ..      37      81 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.1
        RP-C 132 llaRaeElealaeevra 148
                 l aRa E +al +++  
  CTQ29456.1   7 LQARAGEAAALMKAMSN 23 
                 56788888887777654 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.5e-05
        RP-C  72 psNaqLsralglsestlrrhlaaLveaGli 101
                 +s+ +L+ra+gls+s+ ++hla++ + Gli
  CTQ29456.1  39 ASAGELARATGLSPSATSQHLARMRDEGLI 68 
                 58899************************9 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     8e-05     0.062       2      50 ..      26      74 ..      25      96 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8e-05
      HTH_34  2 RlavlsyLasvdeadfvelkealeatdgnLsvhlkkLekagYievdkef 50
                Rl +l +L ++ +a++ el  a++++ ++ s hl  + + g i  + + 
  CTQ29456.1 26 RLLILCMLCDAPRASAGELARATGLSPSATSQHLARMRDEGLIDSERDA 74
                999**************************************99887765 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   0.00011      0.09       3      57 ..      23      75 ..      21      83 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00011
      HTH_27  3 rqqalv.LhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadr 57
                ++++l+ L+ +     r+++ +l++++ ++ s++s  l ++   GL+ +++d+  +
  CTQ29456.1 23 NPHRLLiLCMLC-DAPRASAGELARATGLSPSATSQHLARMRDEGLIDSERDA--Q 75
                556666244444.7788889***************************888776..3 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00016      0.12      20      62 ..      36      79 ..      29      87 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00016
                HCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTTT.EE CS
        TrmB 20 lgpatadeiaeelgvprskvYevLrsLedkGlVerekgrpk.lY 62
                  +a+a e+a+++g++ s   + L ++ d Gl++ e+   +  Y
  CTQ29456.1 36 APRASAGELARATGLSPSATSQHLARMRDEGLIDSERDAQRiHY 79
                567899****************************9997643144 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00018      0.14      13      86 ..      24      91 ..      14      96 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEEEEEETTTEEEEEEEEEECCCHCCCHH CS
  TFIIE_alpha 13 eeavlvldvLlekgevteedlakelkidlnelrklLnrLyearlvkykrrrdeekswykyywrinyeklvdvvk 86
                  +  l+l +L      +  +la+ +++ +    + L+r+++++l++  r        ++  ++i+ + +++v+ 
   CTQ29456.1 24 PHRLLILCMLCDAPRASAGELARATGLSPSATSQHLARMRDEGLIDSER------DAQRIHYFITHPAVQQVIN 91
                 5567889999999999999**************************8765......5678899999999999986 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.3     1e+03      37      52 ..      10      26 ..       7      30 .. 0.70
   2 ?   10.7   0.0   0.00052      0.41      16      47 ..      42      70 ..      31      79 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.3
      HTH_29 37 eegGlaalld.rrrsgr 52
                ++g++aal++   +++r
  CTQ29456.1 10 RAGEAAALMKaMSNPHR 26
                67889999985555554 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00052
      HTH_29 16 sqiAkllglsrrtvyrwlkrfeegGlaalldr 47
                 ++A+++gls++    +l r++ +G   l+d+
  CTQ29456.1 42 GELARATGLSPSATSQHLARMRDEG---LIDS 70
                589**********************...5554 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00028      0.22      14      43 ..      40      70 ..      27      76 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00028
      HTH_28 14 svreaArelgisrrtvyrWikryeegG.iag 43
                s+ e+Ar+ g+s++  ++ + r + +G i++
  CTQ29456.1 40 SAGELARATGLSPSATSQHLARMRDEGlIDS 70
                8899*********************883344 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0016       1.3       3      14 ..      42      53 ..      40      54 .. 0.90
   2 ?    0.7   0.0       0.6   4.7e+02      21      32 ..      64      74 ..      63      79 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0016
                HHHHHHHTTTHH CS
        MerR  3 gevAeltGvspr 14
                ge+A++tG+sp+
  CTQ29456.1 42 GELARATGLSPS 53
                9**********9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.6
                HTTSSTSEEETT CS
        MerR 21 reGLipppeRte 32
                +eGLi  +eR++
  CTQ29456.1 64 DEGLI-DSERDA 74
                58***.999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 838.40
//
Query:       CTQ29457.1  [L=183]
Description: conserved hypothetical protein; putative inner membrane protein with hydrolase activity [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-12   47.6   0.0    3.4e-12   46.8   0.0    1.4  1  Rhodanese  Rhodanese-like domain
      3e-11   43.2   6.8      3e-11   43.2   6.8    2.1  2  DUF2892    Protein of unknown function (DUF2892)
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.23   11.5   0.0    1.3  1  FliMN_C    Type III flagellar switch regulator (C-ring) FliN 


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   5.7e-16   3.4e-12       1     107 []       7      99 ..       7      99 .. 0.80

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 5.7e-16
   Rhodanese   1 sakelkellekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaa.llkklGykn.vsvl 97 
                 +++e+++ +++g+ +l+D+R+++eY++ hIp A  v               l+++++ ++l+ + ++tv+++c+ g+r+++ a  l+ ++  +   ++l
  CTQ29457.1   7 TPAEAQAQIAQGA-RLIDIRDADEYAREHIPDAELV--------------PLATLTSGAPLNARAGETVIFHCQAGSRTQNNAIrLAAAAA-PAqTCLL 89 
                 5778888887775.7*********************..............666777777777789*************5555541444444.555**** PP

   Rhodanese  98 dGGfkawkea 107
                  GG++awk+a
  CTQ29457.1  90 AGGIQAWKAA 99 
                 *******985 PP

>> DUF2892  Protein of unknown function (DUF2892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       0.2   1.2e+03      11      28 ..      74      91 ..      69     102 .. 0.67
   2 !   43.2   6.8   4.9e-15     3e-11      10      62 ..     117     174 ..     114     177 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.2
     DUF2892 11 ilrivvGlvllllallgl 28
                ++r++++++ + + ll++
  CTQ29457.1 74 AIRLAAAAAPAQTCLLAG 91
                788888888777776665 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 4.9e-15
     DUF2892  10 RilrivvGlvllllallglsggw.....gwllglvGavllltgltgfCplyall.g..int 62 
                 R+++i++G+++ll++llg+   +     ++l+g+vGa+l+++g+tgfC++++ll    +n+
  CTQ29457.1 117 RQVQIAAGVLILLGVLLGY---TvnggfFLLSGAVGAGLTFAGVTGFCGMARLLaTmpWNR 174
                 9******************...334688*************************94466665 PP

>> FliMN_C  Type III flagellar switch regulator (C-ring) FliN C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.9e-05      0.23      37      68 ..      46      77 ..      39      81 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.9e-05
                TTGGGCEEEEETTEEEEEEEEEEETTEEEEEE CS
     FliMN_C 37 kpadepvevyvngkpiarGelgvvggrlavri 68
                 + + p+  ++++ +i++++ g   ++ a+r+
  CTQ29457.1 46 LTSGAPLNARAGETVIFHCQAGSRTQNNAIRL 77
                35678**************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1375.60
//
Query:       CTQ29458.1  [L=300]
Description: Beta-hydroxylase, aspartyl/asparaginyl family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-47  161.3   0.0    2.1e-47  160.9   0.0    1.2  1  Asp_Arg_Hydrox  Aspartyl/Asparaginyl beta-hydroxylase
     0.0076   15.9   0.0       0.03   14.0   0.0    1.8  2  Cupin_2         Cupin domain


Domain annotation for each model (and alignments):
>> Asp_Arg_Hydrox  Aspartyl/Asparaginyl beta-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.9   0.0   2.3e-51   2.1e-47       1     157 []      68     222 ..      68     222 .. 0.91

  Alignments for each domain:
  == domain 1  score: 160.9 bits;  conditional E-value: 2.3e-51
                     ---HHHHHHHHHHHTT......S--B-TTGGGEESS...EEEEEEEESS-EE-HHHHT-HHHHHHHHH.H...S-GGGEEEEEEEEE-TTEEEEE CS
  Asp_Arg_Hydrox   1 eanwevIreEleallkeeeelkefeeeseedkgdis...WktfvLyaygaraeenckrcPktaellek.pevkasglklgealfsvlepgshikp 91 
                     ++nw+vIr+E ++l++  e++k+  +++ + +++     Wk+f+L++y+  ++++ ++cP+t++ll++ p+vka       a+f++l+ gs++++
      CTQ29458.1  68 QQNWQVIRDEGLHLQQ-LEQIKAADKYNDAGFNSFFktgWKRFYLKWYEDAHPSASQLCPQTTALLRDiPSVKA-------AMFATLPDGSRLPR 154
                     58************96.6666666666666665544566*****************************888888.......************** PP

                     E-S..-TTSEEEEEEE--TT..EEEEETTEEE---TTEEEEE-TTS-EEEEE-SSS-EEEEEEEEET. CS
  Asp_Arg_Hydrox  92 HrgptngrlrlhLgLvvPee..ceirvggetrtweeGevllfDdsfeHevwnetdeeRvvLlvdvwrp 157
                     Hr+p++g+lr+hLgL +P++  c+i+v+g++++w++Ge +lfD+++ H++ n++ e+R++L++d++rp
      CTQ29458.1 155 HRDPYAGSLRFHLGLATPNDdrCFIEVDGQRYSWRDGEGVLFDETYIHYAENTSGENRLILFCDIERP 222
                     ******************6666********************************************98 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.17   1.5e+03       3      19 ..     144     160 ..     142     167 .. 0.78
   2 !   14.0   0.0   3.4e-06      0.03      32      66 ..     179     214 ..     176     217 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.17
                 EEEETTEEEEEECSSSE CS
     Cupin_2   3 velppGesapshrHpge 19 
                  +lp G   p+hr p++
  CTQ29458.1 144 ATLPDGSRLPRHRDPYA 160
                 678888899****9987 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 3.4e-06
                 EEECTEEEEEETTEEEEE-TT-EEEEEE-SSS.-EE CS
     Cupin_2  32 ltvdgeeveleaGdsvyfpagtpHrfrNtgde.par 66 
                 ++vdg+++  ++G+ v+f+ +  H+ +Nt+ e  + 
  CTQ29458.1 179 IEVDGQRYSWRDGEGVLFDETYIHYAENTSGEnRLI 214
                 469***************************995555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2325.07
//
Query:       CTQ29459.1  [L=59]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.2   0.0      0.018   15.0   0.0    1.1  1  MliC      Membrane-bound lysozyme-inhibitor of c-type lysozym


Domain annotation for each model (and alignments):
>> MliC  Membrane-bound lysozyme-inhibitor of c-type lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   9.8e-07     0.018      15      57 ..      12      48 ..       5      57 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.8e-07
                CTTEEEEEEECCTEEEEEEEEETSSSEEEEETEEEEEETTEEE CS
        MliC 15 agdpsfavlrlggktltLaqavSaSGarYsanyewWtkGdeAt 57
                ag+p++ v++++g++l+  qa+   G+rYs       k de+t
  CTQ29459.1 12 AGGPKLKVVEVQGEQLVVVQAAQEQGERYS------LKSDEVT 48
                7889999**********************5......4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 496.70
//
Query:       CTQ29460.1  [L=133]
Description: DNA binding protein, nucleoid-associated [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-19   71.1   7.0    1.3e-19   70.8   6.5    1.4  1  Histone_HNS   H-NS histone family
  ------ inclusion threshold ------
      0.021   14.6   1.5      0.035   13.9   0.3    1.7  2  Pex19         Pex19 protein family
      0.023   14.5   0.1      0.032   14.0   0.1    1.2  1  ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter 
      0.074   13.5   0.2        0.1   13.0   0.2    1.2  1  DUF3037       Protein of unknown function (DUF3037)
      0.084   13.4   0.3       0.12   12.9   0.3    1.2  1  DcpS_C        Scavenger mRNA decapping enzyme C-term binding
       0.24   11.9   0.9        0.3   11.5   0.9    1.1  1  Vps39_2       Vacuolar sorting protein 39 domain 2


Domain annotation for each model (and alignments):
>> Histone_HNS  H-NS histone family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   6.5   4.2e-23   1.3e-19       5      92 .]      38     127 ..      32     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 4.2e-23
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----SSS-----EEEEE.....---T..TT-SSS.-EEEEES----HHHHHHH..... CS
  Histone_HNS   5 lieelekqeealeaeerkealaeirelaaeyGltleelaaeakkakkkkakakkvpaK..YrdpetegetWsGrGrkPkwlkaalaagks 92 
                  + ++ ++q++a++++e +e++++  el++++G++++el a+ +  k+ ++k++ +paK  Y+d  ++++tW+G+Gr+Pk +++a+a+gks
   CTQ29460.1  38 EEKRTQQQQAAQQQAEYQEKVNTWLELMRADGISPDELVADIQPPKAGGKKRQPRPAKyrYTDHTGAEKTWTGQGRMPKPIAEAVAQGKS 127
                  566778888889***************************9977776666666679999789999************************96 PP

>> Pex19  Pex19 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1       0.2     6e+02      98     112 ..      22      36 ..       1      48 [. 0.56
   2 ?   13.9   0.3   1.2e-05     0.035     190     229 ..      45      84 ..      34      96 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.2
       Pex19  98 sddllaqlLkqLeag 112
                 s d+l+++L++L+  
  CTQ29460.1  22 SIDVLEEMLEKLRIV 36 
                 445666666666444 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.2e-05
       Pex19 190 edysdedkekreeilellqelqelGspPkeLvgdmpegle 229
                 ++  ++++e++e++++ l+ + + G +P+eLv+d ++   
  CTQ29460.1  45 QQAAQQQAEYQEKVNTWLELMRADGISPDELVADIQPPKA 84 
                 44556667**************************766533 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.1e-05     0.032      14      65 ..      19      70 ..      16      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
  ATPgrasp_Ter 14 pEySvDvlaekgevlaavpRrKekgglqelekdeelielaerlaeefgldgl 65
                   E+S+Dvl e  e l +v+ +K +++ q  ++++e  e +++  e +++dg+
    CTQ29460.1 19 REFSIDVLEEMLEKLRIVTEEKRTQQQQAAQQQAEYQEKVNTWLELMRADGI 70
                  7*********999*********989999999999999999999999988875 PP

>> DUF3037  Protein of unknown function (DUF3037)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   3.5e-05       0.1      39      91 ..      12      68 ..       3      81 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.5e-05
     DUF3037 39 aRlralfpeldlealeeelkaleeicegekaagpiak....ldlaerfrwltaprst 91
                + lral+ e+ +++lee+l++l+ ++e+++ ++++a     + ++++ +wl+  r  
  CTQ29460.1 12 RSLRALSREFSIDVLEEMLEKLRIVTEEKRTQQQQAAqqqaEYQEKVNTWLELMRAD 68
                5589*********************97776644444412334444555666655555 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3     4e-05      0.12      44      81 ..      10      47 ..       3      61 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4e-05
                ---SGGG--TT.TTTHHHHHHHHHHHHHHHTT-T-EEEE CS
      DcpS_C 44 dikslrdLtke.hlpllkemrekakkvieekynevdaee 81
                +i+slr L+ e  +++l+em ek++ v eek ++ +++ 
  CTQ29460.1 10 NIRSLRALSREfSIDVLEEMLEKLRIVTEEKRTQ-QQQA 47
                899*****66649*****************9966.3333 PP

>> Vps39_2  Vacuolar sorting protein 39 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.9    0.0001       0.3       5      61 ..       2      57 ..       1      71 [. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
     Vps39_2  5 skhaerldplevLdllPdelplkdlesflekalrnslekkreeqvvkklrkaeklsv 61
                s+  ++l+ ++ L+ l++e ++  le++lek lr  +e+kr++q ++  ++ae ++ 
  CTQ29460.1  2 SSMLHKLNNIRSLRALSREFSIDVLEEMLEK-LRIVTEEKRTQQQQAAQQQAEYQEK 57
                556789*********************9986.6777777777776666666655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2007  (0.111942); expected 358.6 (0.02)
Passed bias filter:                      987  (0.0550505); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 968.35
//
Query:       CTQ29461.1  [L=104]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1037  (0.0578393); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 834.31
//
Query:       CTQ29462.1  [L=149]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-67  224.8   8.6      4e-67  224.6   8.6    1.0  1  AlaE          L-alanine exporter
  ------ inclusion threshold ------
      0.025   14.8   0.0      0.053   13.7   0.0    1.6  1  ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transpor


Domain annotation for each model (and alignments):
>> AlaE  L-alanine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.6   8.6   4.5e-71     4e-67       2     140 ..       4     141 ..       3     142 .. 0.99

  Alignments for each domain:
  == domain 1  score: 224.6 bits;  conditional E-value: 4.5e-71
        AlaE   2 kkkrlrsavaDtlalvvfcfivgmlieilisGmsfeqslasRllsipvniliawPyglyRDallrlakrlspskrlaknlaDllayvsfqsPvYaaill 100
                 +++rlr+avaDt+a+vv+c++v m+iei++sGm+feqsl+sRl++ipvni+ia Pyg+yRD+ +r+a+r+sp++ ++kn+aD+layv+fqsPvY+ail+
  CTQ29462.1   4 AHSRLRHAVADTFAMVVYCTVVNMMIEIFLSGMTFEQSLSSRLVAIPVNIIIAVPYGIYRDFAMRQARRISPAR-WMKNMADVLAYVTFQSPVYVAILW 101
                 679***********************************************************************.************************ PP

        AlaE 101 avGasleqivtavasnavvslvlgvayGlfleyvRrlfrv 140
                 +vGa+++qiv+av+sn+ vs+++g+ayG+fl+y+Rrlfrv
  CTQ29462.1 102 SVGADWHQIVAAVSSNLAVSMMMGAAYGYFLDYCRRLFRV 141
                 ***************************************9 PP

>> ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.9e-06     0.053       5      27 ..     112     134 ..     109     144 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.9e-06
  ATPase_gene1   5 sqiGielvapillggllGywLDk 27 
                     ++++l++++ +g++ Gy+LD 
    CTQ29462.1 112 AAVSSNLAVSMMMGAAYGYFLDY 134
                   57899*****************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1129.90
//
Query:       CTQ29463.1  [L=120]
Description: hypothetical protein CH1034_280068 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-61  202.9   0.2    9.1e-61  202.7   0.2    1.0  1  DUF2002   Protein of unknown function (DUF2002)


Domain annotation for each model (and alignments):
>> DUF2002  Protein of unknown function (DUF2002)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.7   0.2   5.1e-65   9.1e-61       1     110 []       1     110 [.       1     110 [. 0.99

  Alignments for each domain:
  == domain 1  score: 202.7 bits;  conditional E-value: 5.1e-65
     DUF2002   1 mylrpdevarvlekaGferdvvtekayGyrkGenyvyvnrearlGrtalvihpalkeksskfaepaaelktsekyvqfplylageseeyyGiahGfssr 99 
                 mylrpdevarvlekaGf++dvvt+kayGyr+G+nyvyvnrear+Grtalvihpalke+s+ +aepa+++kt+++y+qfplylag+++++yGi+hGfssr
  CTQ29463.1   1 MYLRPDEVARVLEKAGFTMDVVTQKAYGYRRGDNYVYVNREARMGRTALVIHPALKERSNMLAEPASDIKTCDHYEQFPLYLAGDAQQHYGIPHGFSSR 99 
                 9************************************************************************************************** PP

     DUF2002 100 ealerylqklf 110
                 +aler+l+ lf
  CTQ29463.1 100 MALERFLNGLF 110
                 ********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 915.27
//
Query:       CTQ29464.1  [L=115]
Description: hypothetical protein CH1034_280069 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-23   80.7   2.1    1.3e-22   80.2   2.1    1.2  1  DUF883          Bacterial protein of unknown function (DUF883
    0.00054   19.8   0.8    0.00058   19.7   0.8    1.1  1  Activator-TraM  Transcriptional activator TraM
     0.0037   17.5   2.6     0.0053   17.0   2.6    1.3  1  WXG100          Proteins of 100 residues with WXG
  ------ inclusion threshold ------
      0.039   14.5   1.2      0.039   14.5   0.1    1.6  2  PrmC_N          PrmC N-terminal domain
       0.06   13.2   0.2      0.077   12.9   0.2    1.1  1  ACCA            Acetyl co-enzyme A carboxylase carboxyltransf
      0.088   13.2   0.6       0.11   12.9   0.6    1.1  1  Syntaxin_2      Syntaxin-like protein
        2.2    8.9   9.5        1.1    9.8   1.7    2.8  2  YtxH            YtxH-like protein


Domain annotation for each model (and alignments):
>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   2.1   4.9e-26   1.3e-22       2      94 .]      16     114 ..      15     115 .] 0.90

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 4.9e-26
      DUF883   2 eleaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeea......vaerakeaaeaaddyVrenPwqavGiAagvGlllGlLlarR 94 
                 ++++++ +l ++lee+lk+++++a+eeae++R ++++ l+++r+rl+ +++       +++ a +a  +ad+yVr++Pw++vG Aa+vG+ +G+Ll+ R
  CTQ29464.1  16 DIHNDVSQLADTLEEVLKSWGSDAKEEAEAARVKAQSLLKETRARLNGHNRVqqaaldARQAACDALGCADTYVRNKPWHSVGAAAAVGVFIGVLLNLR 114
                 7899*****************************************987665444455578888888899***************************954 PP

>> Activator-TraM  Transcriptional activator TraM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.8   2.3e-07   0.00058      31     116 ..       5      91 ..       1     111 [. 0.83

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.3e-07
  Activator-TraM  31 inerllqdsakaqqelldqfkeeleaiasrWgddakekaervlnaalaaskealvkll.qegakeaaevvrkeveaalarlkssire 116
                     +n + ++++a+   + + q  + le++ + Wg dake ae     a +  ke+ ++l  ++  ++aa  +r+   +al+ + + +r+
      CTQ29464.1   5 VNRNNFDENAEDIHNDVSQLADTLEEVLKSWGSDAKEEAEAARVKAQSLLKETRARLNgHNRVQQAALDARQAACDALGCADTYVRN 91 
                     78888899999999999***********************98888888889988876536778888889999999999988888876 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.6   2.1e-06    0.0053      15      74 ..       9      68 ..       7      78 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.1e-06
                HHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100 15 rfqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeiseal 74
                +f+++ae++++ +++l+ +++++  +W  +a+++ +a+  + +  +++  + L+++++  
  CTQ29464.1  9 NFDENAEDIHNDVSQLADTLEEVLKSWGSDAKEEAEAARVKAQSLLKETRARLNGHNRVQ 68
                89************************************9999999999999999998764 PP

>> PrmC_N  PrmC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1         3   7.6e+03      18      18 ..      39      39 ..      23      51 .. 0.51
   2 ?   14.5   0.1   1.5e-05     0.039       2      38 ..      53      90 ..      52     103 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3
      PrmC_N 18 a 18
                a
  CTQ29464.1 39 A 39
                1 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.5e-05
      PrmC_N  2 aLreaearLkaag.ieeaeldAelLlahvlglsrsdll 38
                +L+e +arL+ ++ +++a+ldA+  ++++lg+  ++++
  CTQ29464.1 53 LLKETRARLNGHNrVQQAALDARQAACDALGCADTYVR 90
                89********9998******************998876 PP

>> ACCA  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2     3e-05     0.077       4      70 ..      17      80 ..       8      87 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3e-05
        ACCA  4 fekpiaeleekieelkklaeesevdlseeieklekkleklkkeiyknltpwqkvqlaRhpeRpktld 70
                +++++++l ++   l+++ ++ + d +ee e+ + k+++l ke+ ++l+  ++vq a    R  + d
  CTQ29464.1 17 IHNDVSQLADT---LEEVLKSWGSDAKEEAEAARVKAQSLLKETRARLNGHNRVQQAALDARQAACD 80
                23333333333...444556678899******************************99999988877 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6   4.1e-05      0.11      29      99 ..       8      77 ..       3      79 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.1e-05
  Syntaxin_2 29 eelreklhelieeinelikktnellkklsqldnsssdsqqklqkekLkkdfkealqeFqkiqrqyaekekq 99
                 +++e+++++ +++++l+ + +e lk+  ++++ +   + +++++ L k+ ++ l+  +++q+ + +++++
  CTQ29464.1  8 NNFDENAEDIHNDVSQLADTLEEVLKSWGSDAKEEAE-AARVKAQSLLKETRARLNGHNRVQQAALDARQA 77
                578899999999***************9998887755.99***********************99888775 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.7   0.00045       1.1      28      65 ..       8      45 ..       4      82 .. 0.64
   2 ?    2.7   1.2     0.074   1.9e+02       4      18 ..      97     111 ..      94     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00045
        YtxH 28 kdlkekaddlkekakelleeakekakekaedlkekvke 65
                +   e+a+d+ +++ +l+++++e  k+ ++d+ke+++ 
  CTQ29464.1  8 NNFDENAEDIHNDVSQLADTLEEVLKSWGSDAKEEAEA 45
                55566666666666666666655554444444444332 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.074
        YtxH   4 lliGaavGaaaglLl 18 
                 + + aavG+ +g+Ll
  CTQ29464.1  97 VGAAAAVGVFIGVLL 111
                 5678999*****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1312  (0.0731775); expected 358.6 (0.02)
Passed bias filter:                      852  (0.0475208); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 926.33
//
Query:       CTQ29465.1  [L=450]
Description: putative GntR-family bacterial regulatory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-22   79.2   0.0    4.4e-22   78.7   0.0    1.1  1  Aminotran_1_2  Aminotransferase class I and II
    3.3e-16   58.7   1.2    7.1e-16   57.6   0.3    2.1  2  GntR           Bacterial regulatory proteins, gntR family
     0.0049   16.5   0.0     0.0098   15.6   0.0    1.4  1  HTH_41         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   7.4e-26   4.4e-22      41     327 ..     131     399 ..     122     420 .. 0.87

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 7.4e-26
                    -BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHH CS
  Aminotran_1_2  41 gpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldleale 136
                    g++ g p l++a+ ++l+ s  ++ +++ +v+ ++ + a  +++ + l ++pg+  ++ dp y+ + +++++ +++v  +p++   d ++d+   +
     CTQ29465.1 131 GDPGGDPLLRQAIVDYLRLSRSIDCQPD-QVLITGSYAASMNLILRTL-AQPGQHMWMEDPGYPFIRPVVEAGQLAVDAIPVD---DEGMDVGWGQ 221
                    678899**********************.**********999999999.99******************************65...6688876666 PP

                    HHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEE CS
  Aminotran_1_2 137 ealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGy 232
                    +    +p+ +     +l+   ++P G++++l+  ++ll+ a ++ ++++ D+  ++f +  +   + +  +++   ++ +g++sK++  + +R ++
     CTQ29465.1 222 R---HHPQARF---ALLTPAHQSPLGVALSLPRRRQLLAWAAERDAWIIEDDYDSEFRYHGKPLPP-LKSLDAPQRVIYAGTFSKSM-FPALRTAW 309
                    6...5555666...9********************************************9774434.5555554559**********.8999**** PP

                    EEEEHHHHHHH.HHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHH CS
  Aminotran_1_2 233 ilgnaavvsql.rklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsaetakelskkLle 326
                    +++   +v    + + r+ +  ++l q+ +a  ++  ++ + +l++mr+ + +rr+ l ++L++ g++v+++ +g+ l++ +s        + Ll 
     CTQ29465.1 310 LVVPTPLVARFhQTAERQSCTvPTLWQQTLADFIQQGHFWR-HLKKMRASYSQRRQWLESALQAQGFQVTPQLGGIQLVMSVSGD------DRLLA 398
                    ***6655555505556667779****************975.**************************************99998......44444 PP

                    T CS
  Aminotran_1_2 327 e 327
                    +
     CTQ29465.1 399 R 399
                    4 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.3   1.2e-19   7.1e-16       1      64 []       8      71 ..       8      71 .. 0.99
   2 ?   -3.1   0.0       1.1   6.6e+03      20      30 ..     275     285 ..     274     287 .. 0.85

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 1.2e-19
                HHHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  1 lyeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                ly++++++L+  I +gel+pG++LP+ r  a+e gVsr t+  A  +L+a+g++err + GtfV
  CTQ29465.1  8 LYQRIARQLKSAIERGELTPGSRLPASRVYAQEQGVSRATIENAWGELVAQGWLERRGQAGTFV 71
                79*************************************************************9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.1
                 TTSB---HHHH CS
        GntR  20 pGdkLPsereL 30 
                 +G +LP+ ++L
  CTQ29465.1 275 HGKPLPPLKSL 285
                 6999***9998 PP

>> HTH_41  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.6e-06    0.0098       3      48 .]      28      71 ..      27      71 .. 0.96

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.6e-06
      HTH_41  3 GdRlktIeelakeleLSvGlvQkALklLeddkaislerrGrlGtfl 48
                G Rl+    +a+e ++S+ ++  A   L++++   lerrG  Gtf+
  CTQ29465.1 28 GSRLPASRVYAQEQGVSRATIENAWGELVAQGW--LERRGQAGTFV 71
                88999999************************6..9*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3787.65
//
Query:       CTQ29466.1  [L=143]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-20   70.5   0.6    4.7e-19   68.2   0.3    2.0  2  CMD       Carboxymuconolactone decarboxylase family
  ------ inclusion threshold ------
      0.048   13.4   0.0       0.11   12.2   0.0    1.6  1  DUF309    Domain of unknown function (DUF309)


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.3   5.3e-23   4.7e-19      12      84 ..      21      94 ..      13      95 .. 0.89
   2 ?    0.5   0.0     0.069   6.2e+02      52      80 ..     113     141 ..      99     143 .] 0.70

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 5.3e-23
                HHHCC.GSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHH CS
         CMD 12 ealla.reggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaae 84
                +a +a  +++L  ++ eL++l+vs++ngc++C+  H +a+++ G+ + ++++++ ++++++++pa+raAla+ae
  CTQ29466.1 21 QASIAlEKSELGNALVELVYLRVSQINGCAFCLEKHSQALRKGGMAQSKLDALAGWRVSAHFTPAERAALAWAE 94
                4445556999**************************************************************98 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.069
                 HTT--HHHHHHHHHHHHHHHSHHHHHHHH CS
         CMD  52 eaGvteeeiaevlaqaaayagwpaaraAl 80 
                 + + t+ +i ++      + +++++  A+
  CTQ29466.1 113 REHFTPRQISDLTFAVSLMNAFNRLAVAM 141
                 55667777777777777777777776666 PP

>> DUF309  Domain of unknown function (DUF309)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.2e-05      0.11      33      52 ..      14      33 ..       5      35 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.2e-05
      DUF309 33 kllqglIqlAvAlyhlrrgn 52
                ++++gl+q+++Al++ + gn
  CTQ29466.1 14 EVYKGLVQASIALEKSELGN 33
                69**************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1093.18
//
Query:       CTQ29467.1  [L=81]
Description: glutaredoxin-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-13   49.5   0.0    4.4e-13   49.2   0.0    1.1  1  Glutaredoxin   Glutaredoxin
     0.0027   17.7   0.0     0.0035   17.4   0.0    1.2  1  Thioredoxin_3  Thioredoxin domain
  ------ inclusion threshold ------
      0.034   14.5   0.0      0.042   14.3   0.0    1.1  1  GST_N_3        Glutathione S-transferase, N-terminal domain
      0.068   11.6   0.0       0.08   11.4   0.0    1.0  1  Head-tail_con  Bacteriophage head to tail connecting protein
      0.091   13.2   0.0      0.092   13.2   0.0    1.1  1  DUF836         Glutaredoxin-like domain (DUF836)
       0.13   12.6   0.0       0.17   12.3   0.0    1.1  1  GST_N          Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   1.5e-16   4.4e-13       1      56 [.       3      57 ..       3      60 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 1.5e-16
                  EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEET CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvfid 56
                  ++++t++ C++C++++r+++++g++fe+++vd+ +++ + l+e  g+r++P+v  +
    CTQ29467.1  3 IIIYTRNDCVQCHATRRAMESRGLAFEMVNVDQQPDAADTLREQ-GFRQLPVVIAG 57
                  79******************************************.*******9864 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.2e-06    0.0035       1      66 [.       1      66 [.       1      72 [. 0.79

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.2e-06
                   EEEEEESSS.STTCHHHHHHHHHHCHCCTCECEEECC.TTHHHH...HHCT-SSSSEEECTTCEEEESS-- CS
  Thioredoxin_3  1 meikvlgpg.CakCpklekavkeaaaekgikaevekv.tdfeei...ekygVmsvPalvidgkvvvsGkvp 66
                   m+i + + + C +C+    a+++a++++g+ +e+++v ++++      + g ++ P +vi g++++sG  p
     CTQ29467.1  1 MRIIIYTRNdCVQCH----ATRRAMESRGLAFEMVNVdQQPDAAdtlREQGFRQLP-VVIAGELRWSGFRP 66
                   677786666699999....9999*********999995544433446899******.5677*******655 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.4e-05     0.042       2      50 ..       6      54 ..       5      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
                ES-TTSHHHHHHHHHHHHHT--EEEE---TTTTHHHHHHH-TT--SSEE CS
     GST_N_3  2 ygfpaSpyarrvrlaLnekglpvevvevtpgehdeellaknplgkvPvL 50
                y  ++++ +   r a++ +gl++e v+v+++   +  l++ + +++Pv 
  CTQ29467.1  6 YTRNDCVQCHATRRAMESRGLAFEMVNVDQQPDAADTLREQGFRQLPVV 54
                77789***************************99999999999999986 PP

>> Head-tail_con  Bacteriophage head to tail connecting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.7e-05      0.08     202     247 ..      11      56 ..       4      63 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.7e-05
  Head-tail_con 202 avypradrdpgkldaknmpfasvyv..eadgeevlresgfeefPylvp 247
                    +v  +a+r  +++++++  f+ v v  + d+ + lre+gf+++P++++
     CTQ29467.1  11 CVQCHATR--RAMESRGLAFEMVNVdqQPDAADTLREQGFRQLPVVIA 56 
                    67778888..9999999999999999899999************9975 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.1e-05     0.092       1      44 [.       2      45 ..       2      73 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.1e-05
                -EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEETTT-CC....CHC CS
      DUF836  1 kltLyskpgChlCeqakekLkelkleegleleviDIakdee....lea 44
                ++++y+++ C  C+    +++  +    l  e ++++++++    l++
  CTQ29467.1  2 RIIIYTRNDCVQCHATRRAMESRG----LAFEMVNVDQQPDaadtLRE 45
                59*******************443....44445555544432233555 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.6e-05      0.17       3      61 ..       3      58 ..       1      60 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.6e-05
                EEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEETT CS
       GST_N  3 ltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedng 61
                ++ y+  ++   h++r + +  g+ +e v++d    + ++++ l+++ + ++P+++ ++
  CTQ29467.1  3 IIIYTRNDCVQCHATRRAMESRGLAFEMVNVDQ---QPDAADTLREQGFRQLPVVIAGE 58
                677888889999********************5...445699999999******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 668.95
//
Query:       CTQ29468.1  [L=136]
Description: protein that stimulates ribonucleotide reduction [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-45  153.6   0.0    2.7e-45  153.4   0.0    1.0  1  Flavodoxin_NdrI  NrdI Flavodoxin like
  ------ inclusion threshold ------
      0.087   12.9   0.0       0.11   12.6   0.0    1.1  1  DUF563           Protein of unknown function (DUF563)


Domain annotation for each model (and alignments):
>> Flavodoxin_NdrI  NrdI Flavodoxin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.4   0.0   3.1e-49   2.7e-45       1     119 [.       5     122 ..       5     123 .. 0.98

  Alignments for each domain:
  == domain 1  score: 153.4 bits;  conditional E-value: 3.1e-49
                      EEE--TT-HHHHHHHHH-S-EEEE-SSTT--.---SS-EEEEEE--TTSSSSTSS-HHHHHHHTSHHHHHCEEEEEEEE-GGGGGGTTHHHHHH CS
  Flavodoxin_NdrI   1 vvysSlsgntkrFvekleleaqripleekeeelevdepyvlivptygegeekkavpkqvieflnkeknrkllrGviasGnrnfgeqyalaakki 94 
                      v++sS s+nt+rFv++l+l+a+ripl+e+ e+l+vdepy+livp+yg+g++++avp+q i+fln+ +nr+l+rGvia+Gnrnfg+ ++ a+++i
       CTQ29468.1   5 VYFSSRSENTHRFVQRLGLPAVRIPLNER-EHLRVDEPYILIVPSYGGGGTAGAVPRQAIRFLNDVHNRQLIRGVIAAGNRNFGDGWGRAGDVI 97 
                      89************************996.56************************************************************** PP

                      HHHHT--EEEEEETT--HHHHHHHH CS
  Flavodoxin_NdrI  95 akkfkvPllykfelrGtkeDvervr 119
                      a+k+ vP+ly+fel+Gt++D+++vr
       CTQ29468.1  98 AQKCAVPYLYRFELMGTPDDINTVR 122
                      **********************998 PP

>> DUF563  Protein of unknown function (DUF563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.2e-05      0.11      33      94 ..       7      71 ..       2      89 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.2e-05
      DUF563 33 laspqpfqrellkllgirpekrikveldepvhvekliv.pvpprssggfqgallp...klrdrlre 94
                ++s+++  ++++++lg+ p+ ri +  +e+++v + ++ +vp++++gg  ga+++   ++++ + +
  CTQ29468.1  7 FSSRSENTHRFVQRLGL-PAVRIPLNEREHLRVDEPYIlIVPSYGGGGTAGAVPRqaiRFLNDVHN 71
                3477788899*******.*****9999999999966551566666666666666644444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1041.03
//
Query:       CTQ29469.1  [L=713]
Description: ribonucleoside-diphosphate reductase 2, alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-141  472.6   0.0   1.7e-139  465.7   0.0    2.6  2  Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
    1.8e-25   88.8   0.0    1.5e-24   85.8   0.0    2.2  2  RNR_N            Ribonucleotide reductase N-terminal
    3.3e-11   43.0   0.0    9.2e-11   41.6   0.0    1.8  1  Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain


Domain annotation for each model (and alignments):
>> Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.11   6.3e+02     163     192 ..     136     165 ..     103     171 .. 0.68
   2 !  465.7   0.0  2.9e-143  1.7e-139       2     523 ..     176     692 ..     175     693 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.11
                      .....XXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 163 kikkkevkakeLfeeiaesawetgePgvlf 192
                        + +e +a++L eei++ +++ ++P +l+
       CTQ29469.1 136 LARGDEQQARQLTEEILSGRFQPATPTFLN 165
                      33366899*****************98876 PP

  == domain 2  score: 465.7 bits;  conditional E-value: 2.9e-143
                      EE.....BSS-EEEE-X..............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC   2 sCfvlsvedslesIletvkeaallskaggGvGlnlsklRakgslvkgtegaasGpvsfmklidavadvvkqgGkRrGAamvylevwHpDiekfi 95 
                      sCf+l++ed++esI ++v++a +lsk+ggGv++ ls+lR+ g+++k +e+++sG+v++mk++++ +++++q G+R+GA +v l+v+HpDi+ f+
       CTQ29469.1 176 SCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGVVPVMKMLEDAFSYANQLGARQGAGAVWLHVHHPDILRFL 269
                      9********************************************************************************************* PP

                      XXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..............................XXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC  96 daKekntgeeenrlsnlnisvgvpdlFmeavkedkdwtLfsPrtvvkleklygee.....feeeyeeleekakikkkevkakeLfeeiaesawe 184
                      d++ +++++e+ r+++l+++v++pd  ++ +ked ++ LfsP+   ++e+lyg+      + + y +l+++++++k+ ++a++Lf+++ae ++e
       CTQ29469.1 270 DTR-RENADEKIRIKTLSLGVVIPDITFQLAKEDAQMALFSPY---DVERLYGKPfadcaIGDLYPQLVADERVRKRWIRARDLFQRLAEIQFE 359
                      ***.88999**********************************...7889***8877777999******************************* PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 185 tgePgvlfkDtiNrrnvlekakggkIratNlCgEiplleyes.............vavCnLasinLakfvkkdeegkkefdwdelkkviqlvvr 265
                      +g+P+++f Dt+Nr++++     g+++++NlC+Ei++++++s             +++CnL+s+n+a+ +          d  ++ ++i ++vr
       CTQ29469.1 360 SGYPYIMFEDTVNRASPV----AGRVTMSNLCSEILQVSTPSaynedlsyahigeDISCNLGSLNIAHTM----------DSPDFGRTIATAVR 439
                      ******************....58**********************************************..........8889********** PP

                      XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX CS
                      xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 266 aLdnvidv.nkyplpeiekntkktRriGlGvmgladalaklgipydseealkfarkitelltyyaykaSvelAkerg.pfplfekskyskgilp 357
                      aL++v d+ +   +p+++ ++  +++iGlG m+l+ +la+ gi+y+s+e+l+f++ ++ ++t +a+ +S++lA+erg  f++fe+s+y++g  +
       CTQ29469.1 440 ALTAVSDMsDIQSVPSVAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEGLDFTNIYFYTVTWHALHTSMQLARERGqRFAGFEQSRYASG-AY 532
                      ********556789*****************************************************************************.6* PP

                      XXXX..X...........................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX CS
                      xxxx..xxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Ribonuc_red_lgC 358 vdef..eeke.....................kedweeLreeikkyGlrnamvtalaPTgsiSliagtssgiePifalvykksvtv.geflevnp 427
                      +d++  e  e                     +e+w++Lr+++++yG++n ++ a++PTgsiS+i++++s+i+Pi+++++++++ + g++++   
       CTQ29469.1 533 FDKYlqE--EwqpktervralfaragislpdRESWRQLRDDVMRYGIYNRYLQAVPPTGSISYINHATSSIHPIVSKIEIRKEGKtGRVYYP-- 622
                      ****651..3455667899999999*****9**************************************************99877886666.. PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 428 vfeeeLkklglwseellkkilesvqgleeipeeikrvfktaldidqedhikaqaaiqkwidqsiSktinlpneatvedvkelyllAwklGlKgv 521
                                                ++ ++++  ++++ a++i +e++i+++a++++++dq+ S+t+++p++at++d++++ ++Awk+G+K++
       CTQ29469.1 623 --------------------------APFMNNDNLALYQDAYEIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWKKGIKTL 690
                      ..........................677789************************************************************** PP

                      XX CS
                      xx RF
  Ribonuc_red_lgC 522 ty 523
                      +y
       CTQ29469.1 691 YY 692
                      *9 PP

>> RNR_N  Ribonucleotide reductase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.0   2.5e-28   1.5e-24       1      82 []      15      96 ..      15      96 .. 0.98
   2 ?    0.1   0.0      0.14   8.4e+02       1      37 [.     502     540 ..     502     554 .. 0.68

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 2.5e-28
       RNR_N  1 YieLNnelnlkdedgkiqlekDkeAleaYlkehvnpntvkfesleekldyLvendYyeeevlekYskefieelyklayskkF 82
                +++LN++lnl+d++g+i++ekD++A+ea++ ++v+pn  +f s e+kl++Lv+++Yy+++vl+ Y++ f+  l+++a+++ F
  CTQ29469.1 15 FHALNAMLNLYDSEGRIPFEKDRQAVEAFMATQVQPNALTFPSPEDKLSWLVSEGYYDPQVLAGYDRGFVLALFAHARRAPF 96
                79***************************************************************************98776 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.14
       RNR_N   1 YieLNnelnlkdedgki..qlekDkeAleaYlkehvnpn 37 
                 +++L   ++l +e g+    +e+ + A  aY+ ++ +++
  CTQ29469.1 502 WHALHTSMQLARERGQRfaGFEQSRYASGAYFDKYLQEE 540
                 677777777777776644488999999999999888765 PP

>> Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   1.5e-14   9.2e-11       2      82 ..      98     170 ..      97     171 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 1.5e-14
  Ribonuc_red_lgN   2 kltynalkvledrYllkdeng.eivEspqqmfmRvAlalaiaealydkleedkdlaeefydlmssqkflpasPtlmnaGtel 82 
                      + t++++ +++ +Y+lk+ +g  ++E+  ++  +vAl+la          +d++ a+++ + + s +f+pa+Pt++naG+ +
       CTQ29469.1  98 FQTFLGAWKFYTSYALKTFDGkHYLEDFAERSVMVALTLAR---------GDEQQARQLTEEILSGRFQPATPTFLNAGKQQ 170
                      57999****************88*****************9.........9****************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4856.12
//
Query:       CTQ29470.1  [L=320]
Description: ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-84  283.7   0.0    1.9e-84  283.5   0.0    1.0  1  Ribonuc_red_sm  Ribonucleotide reductase, small chain


Domain annotation for each model (and alignments):
>> Ribonuc_red_sm  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.5   0.0     1e-88   1.9e-84       2     279 .]      10     281 ..       9     281 .. 0.97

  Alignments for each domain:
  == domain 1  score: 283.5 bits;  conditional E-value: 1e-88
                     T-TTS-SSHHHHHHHHHHHCT---GGGS-GHHHHHHHHSTS-HHHHHHHHHHHHHHHHHHHHHHHCHHHCHHCCBSSHHHHHHHHHHHHHHHHHH CS
  Ribonuc_red_sm   2 fvlfpikypeiwelykkleanfWtpeevdlskDlkdwkekLsedekefikkvlaflalldtivnenlverllsevqipearafygfqaamEniHa 96 
                     +++++i++++++e++++l++nfW+pe+v+ls+D+  w+ +Ls +e++++ +v+++l+lldti+n++++++l+ ++ +p+++a+++++ +mE++Ha
      CTQ29470.1  10 INWNRIDDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQ-TLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHA 103
                     89***********************************9.5******************************************************* PP

                     HHHHHHHHHHT.-HHHHHHHHCHHHH-HHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSSHHHHHHHHHHHHHH CS
  Ribonuc_red_sm  97 esYsllletlvkdekekdelfnaieenpalqkkaewikkwyeskkdeekfaerlvafallegilfysgFaailwlkkrgllpglaeiielilrDe 191
                     +sYs++++tl+  +ke d +f + e+ + lq+ka+++  +y+ ++     +++++a+++le++lfysgF +++++++rg+l+++a+ i+li+rDe
      CTQ29470.1 104 RSYSSIFSTLC-HSKEVDAAFAWSESCDPLQRKAQLMLGYYQADE----PLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDE 193
                     ***********.9999**************************655....356******************************************* PP

                     HHHHHHHHHHHHHHHHCS.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.BTT.CHHHHHHHHHHHHHHHHHHCTT---SS-TT..---C CS
  Ribonuc_red_sm 192 glHtdfagllfkelkeen.elenkeleeeveelikeavelEkefitdalpvellg.lnkedvkqYieyvadrllmnlgyeklYnve..eenP 279
                     ++H++++g+++++ +e     +++el+++  +l+ +++++E ++ +++++    g ++  dv++++ y+a+++lmnlgye+l+++e   +nP
      CTQ29470.1 194 AVHGYYIGYKYQKGLEIVsPGKREELKNFALDLLMDLYDNELAYSRELYGE--SGwFD--DVSAFLCYNANKALMNLGYEALFPAEmaAVNP 281
                     **************99999******************************88..57677..************************98877777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2379.87
//
Query:       CTQ29471.1  [L=400]
Description: glycine betaine transporter subunit; ATP-binding compoent of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-33  115.9   0.0    3.9e-33  114.9   0.0    1.5  1  ABC_tran      ABC transporter
    2.3e-09   37.6   0.0    1.6e-05   25.2   0.0    2.9  2  CBS           CBS domain
    0.00026   21.4   0.3    0.00097   19.6   0.3    2.0  1  AAA_16        AAA ATPase domain
     0.0011   18.8   0.0      0.073   12.9   0.0    2.3  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
     0.0026   17.5   0.0      0.023   14.4   0.0    2.4  3  AAA_30        AAA domain
     0.0027   18.0   1.0      0.055   13.7   0.5    2.8  2  AAA_22        AAA domain
     0.0029   17.3   0.0      0.006   16.3   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
     0.0029   16.5   0.2       0.26   10.1   0.0    2.1  2  ABC_ATPase    Predicted ATPase of the ABC class
     0.0041   16.6   0.2       0.12   11.8   0.2    2.1  1  SMC_N         RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.036   14.0   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
      0.027   15.0   0.0      0.076   13.6   0.0    1.7  2  AAA_18        AAA domain
      0.032   14.7   0.1       0.67   10.4   0.1    2.4  1  AAA           ATPase family associated with various cellular 
      0.063   13.2   0.1       0.12   12.3   0.1    1.5  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
      0.073   13.0   0.0       0.13   12.1   0.0    1.5  1  APS_kinase    Adenylylsulphate kinase
        0.1   12.7   0.1       0.19   11.9   0.1    1.7  1  AAA_33        AAA domain
       0.16   12.2   0.0       0.41   10.9   0.0    1.7  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
       0.17   12.0   0.2       0.37   10.8   0.0    1.6  2  DUF87         Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.0   3.7e-36   3.9e-33       2     136 ..      45     192 ..      44     193 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 3.7e-36
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren.............esde 83 
                 k+ sl ++ege+ +i+G +G+GKSt+++ll +l +pt G++l+dg d+ +    + +e+ rk+i++++q   l p+++v +n             e+++
  CTQ29471.1  45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKmsdaELREVRRKKIAMVFQSFALMPHMSVLDNtafgmalagvpaaEREQ 143
                 899**********************************************99999999************************************999999 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++ +al+++gl++ ++        +LSgG++qrv laral+ +p++ll+DE++
  CTQ29471.1 144 KAREALRQVGLENYAHAWP----DELSGGMRQRVGLARALAINPDILLMDEAF 192
                 9*********999777776....****************************97 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0015       1.6      20      55 ..     298     333 ..     276     335 .. 0.78
   2 !   25.2   0.0   1.5e-08   1.6e-05       9      56 ..     347     393 ..     341     394 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0015
                 HHHHHHHHHT..SSEEEEEETTTBEEEEEEHHHHHHHH CS
         CBS  20 ealelmrekg..vsrlPVVdedgklvGivtlrDllral 55 
                  al+l+ +++  + ++ V++  +++vGiv+   l  al
  CTQ29471.1 298 SALKLLQDEDreY-GY-VIERGNRFVGIVSIDSLKTAL 333
                 6888887544457.88.**65669******99887766 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 1.5e-08
                 CEEEETTSBHHHHHHHHHHHT.SSEEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   9 vvtvppdttleealelmrekg.vsrlPVVdedgklvGivtlrDllrall 56 
                 ++ v  +t+l+++l     ++ + ++PVVde+ +++Gi+++r ll+al 
  CTQ29471.1 347 PLAVEAQTPLSDLLSHV-GHApC-AVPVVDEEQQYIGIISKRMLLQALD 393
                 5678899**********.77789.**********************985 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   9.2e-07   0.00097      23      63 ..      53      93 ..      46     231 .. 0.58

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 9.2e-07
      AAA_16 23 rpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                ++e+ ++ G sG+GKs++vr l r +e ++g +l    d  
  CTQ29471.1 53 EGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIA 93
                55899*******************99999888855544444 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.043        46       1      23 [.      56      78 ..      56     112 .. 0.80
   2 !   12.9   0.0   6.9e-05     0.073     235     299 ..     163     225 ..     150     229 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.043
      AAA_21  1 lnvliGpNgsGKSnLLdaldlla 23
                + v+ G  gsGKS+  ++l  l 
  CTQ29471.1 56 IFVIMGLSGSGKSTMVRLLNRLI 78
                67999*********999998884 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.9e-05
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll.ellkelsrngaQviltTHSp 299
                 +elS G+++  +l+ al+  +   ++ll DE  + L+P + ++   el+k+ +++   +++ +H+ 
  CTQ29471.1 163 DELSGGMRQRVGLARALAINP---DILLMDEAFSALDPLIRTEMQdELIKLQAKHQRTIVFISHDL 225
                 688*****999*******999...9*************7777777888899999999*******95 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.2e-05     0.023      16      50 ..      52      86 ..      45      98 .. 0.84
   2 ?   -0.5   0.0      0.83   8.8e+02     133     158 ..      82     107 ..      81     117 .. 0.86
   3 ?   -0.9   0.0       1.1   1.1e+03      57     114 ..     328     394 ..     287     398 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.2e-05
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaaggrvi 50
                ++  + v+ G  G+GK+t+++ l++++e   g+v+
  CTQ29471.1 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL 86
                445699*********************99876775 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.83
      AAA_30 133 aGgvlrdlveaagigtaeLtevvRqk 158
                 +G+vl d v+ a++  aeL+ev+R k
  CTQ29471.1  82 RGQVLIDGVDIAKMSDAELREVRRKK 107
                 7899999999999***********86 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.1
      AAA_30  57 kaAkvLaeelgieastiakllkrlk........grarlepgtllivDEagmv.dtkqlaallkaaek 114
                     +L+++ giea+ i+  l   +        +++  +p  + +vDE     ++ + + ll+a+++
  CTQ29471.1 328 SLKTALSAGQGIEAALIDAPLAVEAqtplsdllSHVGHAPCAVPVVDEEQQYiGIISKRMLLQALDR 394
                 4555666666777777766665444666777664455667788889886543266666666666555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.5   5.2e-05     0.055       5      30 ..      54      79 ..      51     229 .. 0.58
   2 ?   -1.1   0.0         2   2.1e+03      62     108 ..     341     387 ..     298     397 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.2e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlleqld 30
                  i v++G sG+GK+t +r l +  +
  CTQ29471.1 54 GEIFVIMGLSGSGKSTMVRLLNRLIE 79
                6789***************9998763 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2
      AAA_22  62 ralglelkaerlsseellealeqalraravielliiDEaqh.lr..seea 108
                  al +   a   + +  l+ l  ++ ++   ++ ++DE q  +   s+++
  CTQ29471.1 341 AALIDAPLA--VEAQTPLSDLLSHVGHAPC-AVPVVDEEQQyIGiiSKRM 387
                 444444444..4667777777788888888.8888888777332554544 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.7e-06     0.006      16      40 ..      48      72 ..      43      85 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.7e-06
      AAA_29 16 tieidlkgatlltGpsGsGKSTllD 40
                ++ i++ ++++++G sGsGKST++ 
  CTQ29471.1 48 SLAIEEGEIFVIMGLSGSGKSTMVR 72
                566775559*************985 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.014        15     240     265 ..      49      75 ..      43      81 .. 0.89
   2 !   10.1   0.0   0.00024      0.26     323     384 ..     165     226 ..     156     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.014
                 EEE-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAle 265
                 ++i +G +++I+G    GKsT+++ l+
  CTQ29471.1  49 LAIEEGeIFVIMGLSGSGKSTMVRLLN 75 
                 78999*9**************998776 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00024
                 --HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHH CS
  ABC_ATPase 323 ASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrely 384
                  SG + q + +++al ++ ++lL+DE  sA   +ir e+ +el++ +++  +++v   ++l 
  CTQ29471.1 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELIKLQAKHQRTIVFISHDLD 226
                 599*************************************9999766665555555555554 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.2   0.00011      0.12      27     202 ..      57     226 ..      41     243 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H..HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtk..kev 123
                  +i+G  GSGKs ++  +        ++ +  ++ + li    + a+++ ae+  +   ++ +++ ++  +    +v  +    +++ g  + +  ++ 
  CTQ29471.1  57 FVIMGLSGSGKSTMVRLL--------NRLIEPTRGQVLIDG-VDIAKMSDAELREVR-RKKIAMVFQSFALMPHMSVLDNTAFGMALAGVPAAEreQKA 145
                 567777777777777655........344566666667776.666667777776652.22222333333444445555555566666666655423555 PP

                 HHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHC CS
                 xxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreeml 202
                 +e l+++g++        +LSgG ++ v la  +Ai+      + l+De  +aLD   ++++ + l + + + Q  ++ +++++ 
  CTQ29471.1 146 REALRQVGLENYahawpdELSGGMRQRVGLARALAINP----DILLMDEAFSALDPLIRTEMQDELIKLQAKHQRTIVFISHDLD 226
                 6677777776546666669**************99964....4889**********99998887666666666655555554444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.4e-05     0.036      99     121 ..      53      76 ..      23     104 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.4e-05
                  T.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  99 d.ktsvlvGqSGvGKStLinallp 121
                  + ++ v++G SG GKSt++  l+ 
   CTQ29471.1  53 EgEIFVIMGLSGSGKSTMVRLLNR 76 
                  4499*************9987764 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.2e-05     0.076       2      37 ..      58      95 ..      58     128 .. 0.74
   2 ?   -3.0   0.0       9.2   9.7e+03      53      70 ..     200     222 ..     176     240 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.2e-05
      AAA_18  2 lltGtpGvGKttlakeLskrlgf..gvnlrdvakengl 37
                +++G +G+GK+t+ + L+++ +   g++l+d +    +
  CTQ29471.1 58 VIMGLSGSGKSTMVRLLNRLIEPtrGQVLIDGVDIAKM 95
                599**************998532566666665555554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.2
      AAA_18  53 dedkldklldaleenss.....a 70 
                 +++++d+l+++  ++ +     +
  CTQ29471.1 200 RTEMQDELIKLQAKHQRtivfiS 222
                 55566666666666654333330 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00064      0.67       3      69 ..      59     193 ..      57     240 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00064
                 EESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS...................................................... CS
         AAA   3 lyGppGtGKTllakavakel..........gvefleisgsellsk...................................................... 37 
                 ++G  G GK+++++ + + +          gv++ ++s +el++                                                       
  CTQ29471.1  59 IMGLSGSGKSTMVRLLNRLIeptrgqvlidGVDIAKMSDAELREVrrkkiamvfqsfalmphmsvldntafgmalagvpaaereqkarealrqvgleny 157
                 78999*********9999975555545555577777777777743666777777777777888888888888888888888888888888888888888 PP

                 ...STTHHHHHHHHHHHHHHHTS.TSEEEEEETGGG CS
         AAA  38 ...yvgesekkirelfkeakeka.kpsilfiDEida 69 
                    +  e +  +r+ +  a++ a +p il++DE+ +
  CTQ29471.1 158 ahaWPDELSGGMRQRVGLARALAiNPDILLMDEAFS 193
                 888888888888888888888888888888888654 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00011      0.12       6      16 ..     247     257 ..     246     257 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
  BCA_ABC_TP_C   6 GtPaEvrndPr 16 
                   GtP+E+ n+P+
    CTQ29471.1 247 GTPDEILNNPA 257
                   9*********7 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.13       3      44 ..      55      95 ..      53     157 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTT CS
  APS_kinase  3 vvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhg 44
                 ++ + GlsgsGKst+ + l++ L e  +  +l+dG  + + 
  CTQ29471.1 55 EIFVIMGLSGSGKSTMVRLLNR-LIEPTRGQVLIDGVDIAKM 95
                567899**********999986.5555666667888777655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00018      0.19       2      19 ..      57      74 ..      56     230 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00018
      AAA_33  2 vllvGlpGsGKstlaerl 19
                +++ Gl+GsGKst ++ l
  CTQ29471.1 57 FVIMGLSGSGKSTMVRLL 74
                5789*********99865 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00039      0.41      52      83 ..     171     202 ..     164     209 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00039
     SbcCD_C  52 alyssaegrepalrlvfLDEAFsklDeesiat 83 
                 + ++ a++   +++++++DEAFs lD+  +++
  CTQ29471.1 171 QRVGLARALAINPDILLMDEAFSALDPLIRTE 202
                 55555544567899************866555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00035      0.37      27      57 ..      58      87 ..      55      89 .. 0.75
   2 ?   -3.4   0.0       7.8   8.3e+03      89     120 ..     178     207 ..     170     229 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
       DUF87 27 AilgsTGsGKSntvavLleellekkgatili 57
                 i+g +GsGKS+ v++ l++l+e  ++++li
  CTQ29471.1 58 VIMGLSGSGKSTMVRL-LNRLIEPTRGQVLI 87
                58999******99986.57777555555554 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.8
       DUF87  89 elkinpwsldpeelldlleeddkpaaavqrsv 120
                  l inp+ l ++e ++ l+      ++ q+++
  CTQ29471.1 178 ALAINPDILLMDEAFSALDP--LIRTEMQDEL 207
                 57777777777777777777..4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2749.10
//
Query:       CTQ29472.1  [L=355]
Description: glycine betaine transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-26   92.3  16.1      3e-26   92.3  16.1    2.3  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   9.0     0.029   5.2e+02      14      65 ..      89     140 ..      83     163 .. 0.61
   2 !   92.3  16.1   1.7e-30     3e-26       1     179 [.     164     328 ..     164     334 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.029
  BPD_transp_1  14 kkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaa 65 
                    ++d++l+ + ++ll++P  v +i++ l++  +s+lg ++  ++ l++++a+
    CTQ29472.1  89 VPIDYILSAFQQLLLGMPAPVAIIVFALIAWQISSLGMGVATLVSLIAIGAI 140
                   578999***************6666665554444444444442222222222 PP

  == domain 2  score: 92.3 bits;  conditional E-value: 1.7e-30
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqi 97 
                   g++lGi++a  r+ +  k++rpl ++++++P fv ++++v        +g ++ p++++++++a+p++++++  +++++p dl+ea+r  Gas++q+
    CTQ29472.1 164 GLPLGIWLA--RSPRAAKIIRPLLDAMQTTPAFVYLVPIV------MLFGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQL 252
                   89*******..99***************************......89************************************************* PP

  BPD_transp_1  98 frkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrll 179
                   ++kv lP+a+p+i++g+  +++++l   v++++++  +Glg+++l+ i   d+ +++     ++++ +++l +++d l++++
    CTQ29472.1 253 LFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIA-VGGLGQMVLRGIGRLDMGLAT-----VGGVGIVILAIILDRLTQAV 328
                   ***********************************.567***************666.....55555555566666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2593.32
//
Query:       CTQ29473.1  [L=332]
Description: glycine betaine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-57  193.7   4.2    4.9e-57  193.4   4.2    1.1  1  OpuAC     Substrate binding domain of ABC-type glycine betain
  ------ inclusion threshold ------
      0.019   14.9   0.1      0.057   13.4   0.1    1.8  1  PepSY_2   Peptidase propeptide and YPEB domain


Domain annotation for each model (and alignments):
>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.4   4.2   5.4e-61   4.9e-57       2     256 ..      31     314 ..      30     315 .. 0.95

  Alignments for each domain:
  == domain 1  score: 193.4 bits;  conditional E-value: 5.4e-61
                 EEEEEEESSHHHHHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHHHHHHHHHHHHHHEEEEEEEESEEECEEEEEEHHHHHHH CS
       OpuAC   2 tivigsknwteqevlaeilkqllekkGykveltnlgstavlfaalasGdiDvypeewtgtayeaykkaveekkglevlgplgagnteglavpkyvaeky 100
                 t++ ++++++e+ + + +++ +lek+Gy+ve+++   ++v+++++a Gd ++++ +w + +++ y++ + ++++ +  g ++ g+++g+ ++k++ae+y
  CTQ29473.1  31 TVKPAQSTISEESFQTLLVSRALEKLGYTVEKPSEVDYNVAYTSIAAGDTTFIATNWQPLHDDMYAA-AGGDNKFYRKGVYVSGAAQGYLIDKKTAEQY 128
                 899*************************9999998889*********************96666666.8889999999********************* PP

                 TTTBHHHHCTHHG....GTEEEEEHHCCHSTTSHHCCHHHHHHHHHHT-T.TCEEEGSCEEEEHHHHHHHHHTTCSSEEEEETTSTHHHHT....TEEE CS
       OpuAC 101 giksisDLkkpae....dlelgakgeflgrpdgwgcekvtegllkaYgld.kvelvegseaamdaelyaaykrgepvvvyawtPdwaikky....dlvv 190
                 +i+si++Lk+p+     d ++++k++++g+ +gwgce v+++ ++aYgl+ +v++++g++aam+a++ a+yk+g+pv++y+wtP w  + +    d+v+
  CTQ29473.1 129 HITSIDQLKDPQIaklfDTNNDGKADLTGCTPGWGCEAVINHQIDAYGLSkTVTHNQGNYAAMMADTIARYKEGKPVLYYTWTPYWVSDVLkpgkDVVW 227
                 **************99999******************************88*******************************************9**** PP

                 -B..................-TTSTS-SSEEEEEEEEHHHHHHSCTHHHHHHHHC--HHHHHHHHHHHHTTTT-H...HHHHHHHHH CS
       OpuAC 191 Le..................dpkglfppaynvvpvvrkefaekaPevaafLeklsldtetlnelnaqvdvegkdp...eevAkawla 256
                 L+                  ++ ++ +p++++++v++k++aek+P++a++++ ++l+++++n+ na ++++++++   + +++ w++
  CTQ29473.1 228 LQvpfsslpgeqknidtklaNGANYGFPVNTMHIVANKAWAEKNPAAATLFSVMKLPIADINAENAMMHEGHASEadiNGHVDGWIK 314
                 **********************************************************************99888444446677765 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   6.3e-06     0.057       2      48 ..       7      62 ..       6      73 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.3e-06
     PepSY_2  2 aalalalallaaaAlA....grrdtdspkadwlpreklv.....akleaqGykvkk 48
                +a+a+ ++lla+ A+A    g+  t +p + ++++e ++     + le+ Gy+v+k
  CTQ29473.1  7 LATAAFATLLATSAFAadlpGKGITVKPAQSTISEESFQtllvsRALEKLGYTVEK 62
                68999***************999999*******99997622222567889999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2621.14
//
Query:       CTQ29474.1  [L=248]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-38  130.1   8.3    7.4e-38  130.1   8.3    1.8  2  AzlC             AzlC protein
  ------ inclusion threshold ------
       0.66   10.1   7.4       0.06   13.5   2.1    1.9  2  PIG-F            GPI biosynthesis protein family Pig-F
          6    7.1   9.0        3.6    7.8   1.3    2.6  2  Bacteriocin_IIc  Bacteriocin class II with double-glycine lea


Domain annotation for each model (and alignments):
>> AzlC  AzlC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1   8.3   1.2e-41   7.4e-38       1     135 [.      27     168 ..      27     169 .. 0.92
   2 ?   -1.5   0.3      0.53   3.2e+03     124     131 ..     205     212 ..     178     235 .. 0.59

  Alignments for each domain:
  == domain 1  score: 130.1 bits;  conditional E-value: 1.2e-41
        AzlC   1 PillgylpvgiafGvlavqaglsvweavlmSllvfAGsaqfaavgllaagasllaivlttllvNlRhllyglslapklkk.lsrlkrlllaflltDetf 98 
                 Pi+++ylpv++afG+ a+  g++++e++++S +++AG++qf+++ +laag+sl++++lt++ + +Rh+lyg sl+ ++++ l ++k++l+af+ltDe+f
  CTQ29474.1  27 PIVISYLPVAFAFGLNATRLGFTPLESLFFSCIIYAGASQFVITAMLAAGSSLWVAALTVMAMDVRHVLYGPSLRSRIRSaLDKKKTALWAFGLTDEVF 125
                 9***********************************************999***************************7746667778999******** PP

        AzlC  99 alasar......klsrayflglglllylawvlgtllGallgsl 135
                 a+a+ar      ++s++++lgl+++++++wv+gtl+Ga+ g+ 
  CTQ29474.1 126 AAATARlvrdnrRWSENWMLGLAFTSWASWVCGTLAGAWSGNG 168
                 ***8676666555559***********************9986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.53
        AzlC 124 lgtllGal 131
                 +++l+Gal
  CTQ29474.1 205 TAALAGAL 212
                 33333332 PP

>> PIG-F  GPI biosynthesis protein family Pig-F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.1     1e-05      0.06      55     145 ..      70     166 ..      27     168 .. 0.81
   2 ?   -1.5   0.3       0.4   2.4e+03     161     167 ..     221     227 ..     180     241 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1e-05
       PIG-F  55 kivlallsllltlllatlllaillvlfGApllthl......leTlllalhlslltvlpllyvlgvdaeawkevvsleepldevlggllgtvvGaWlG 145
                 + +la  s+l ++ l+++++ +  vl+G  l + +      ++T+l+a+ l+  ++ +++  l  d ++w e + l  ++ +  + ++gt+ GaW G
  CTQ29474.1  70 TAMLAAGSSLWVAALTVMAMDVRHVLYGPSLRSRIrsaldkKKTALWAFGLTDEVFAAATARLVRDNRRWSENWMLGLAFTSWASWVCGTLAGAWSG 166
                 44556666677777789999999*****999654322223379***************************************999999*******88 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.4
       PIG-F 161 PitilvG 167
                 P +il G
  CTQ29474.1 221 PAAILAG 227
                 3333333 PP

>> Bacteriocin_IIc  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.3     0.019   1.1e+02      22      41 ..     149     168 ..     146     184 .. 0.75
   2 ?    7.8   1.3    0.0006       3.6      26      55 ..     201     231 ..     195     236 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.019
  Bacteriocin_IIc  22 qgtvggivggalaGaatGaa 41 
                      ++ ++++v g laGa +G  
       CTQ29474.1 149 FTSWASWVCGTLAGAWSGNG 168
                      56788899999999988866 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0006
  Bacteriocin_IIc  26 ggivggalaGaatGaa.....tlgilgaavGavvG 55 
                      + +v++alaGa +G+      +    +  +G v G
       CTQ29474.1 201 SLCVTAALAGALGGILlfsipA----AILAGIVCG 231
                      55899***********433322....223333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2155.44
//
Query:       CTQ29475.1  [L=111]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-14   52.9   7.3    3.6e-14   52.7   7.3    1.0  1  AzlD      Branched-chain amino acid transport protein (AzlD)


Domain annotation for each model (and alignments):
>> AzlD  Branched-chain amino acid transport protein (AzlD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   7.3     2e-18   3.6e-14       1      98 [.       5     104 ..       5     105 .. 0.93

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 2e-18
        AzlD   1 illaillmalvtyltRylplllfrrlklppwlq...rllryvPi....avLaaliapellaetgklsaslglarllaalvavlvalltrnlllsilvGm 92 
                 +ll+ ++++ v+yl+Rylpl+l++++  p++      ll++++i    a+L++  +pe+la+ ++     + ++l+++lv  +++++tr++++ +l+++
  CTQ29475.1   5 VLLLGVIVGGVNYLFRYLPLRLRAGHARPARRGpvsVLLDTIGIasicALLVVSSVPEILADAHR-----LAPTLTGFLVLGAAFWKTRSIIVPTLLSA 98 
                 58999********************999999989989*******888899999999999999887.....99*************************** PP

        AzlD  93 avyall 98 
                 ++y+l+
  CTQ29475.1  99 FAYGLV 104
                 ***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 872.36
//
Query:       CTQ29476.1  [L=176]
Description: DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-17   61.1   3.2    1.5e-16   60.0   0.2    2.5  2  MarR        MarR family
    9.9e-09   35.0   0.0    1.8e-08   34.1   0.0    1.5  1  MarR_2      MarR family
    7.2e-06   26.4   0.2    2.3e-05   24.8   0.0    1.9  2  HTH_27      Winged helix DNA-binding domain
    0.00022   21.1   0.7    0.00057   19.8   0.1    1.9  2  HTH_Crp_2   Crp-like helix-turn-helix domain
    0.00037   20.6   0.0    0.00072   19.7   0.0    1.4  1  HTH_34      Winged helix DNA-binding domain
    0.00096   18.7   0.2      0.026   14.1   0.0    2.3  2  HTH_24      Winged helix-turn-helix DNA-binding
     0.0054   16.6   0.0     0.0086   15.9   0.0    1.3  1  TrmB        Sugar-specific transcriptional regulator TrmB
     0.0099   15.7   0.1       0.42   10.4   0.0    2.3  2  FtsK_gamma  Ftsk gamma domain
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.036   13.9   0.0    1.5  1  HTH_IclR    IclR helix-turn-helix domain
      0.041   13.8   0.4       0.12   12.4   0.1    1.9  2  PadR        Transcriptional regulator PadR-like family
      0.058   13.7   0.1       0.14   12.6   0.0    1.7  2  Rrf2        Transcriptional regulator


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.2   9.2e-20   1.5e-16       1      58 [.      53     112 ..      53     113 .. 0.98
   2 ?    1.0   0.3      0.25     4e+02       4      22 ..     131     149 ..     130     172 .. 0.55

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 9.2e-20
                 --HHHHHHHHHHHHSTTEEHH..HHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR   1 ltltqfviLrilyeqgplsvs..eLakklgvskstvtrvldrLekkGlieRskspeDrRe 58 
                 +++t f++L +l++q+++s++  eL ++lg s++++tr++d+Lek+G+ieR+ s +DrR+
  CTQ29476.1  53 INETLFMALITLESQENHSIQpsELSCALGSSRTNATRIADELEKRGWIERRESDNDRRC 112
                 6899*******************************************************8 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHSTTEEHHH CS
        MarR   4 tqfviLrilyeqgplsvse 22 
                 +q+ +L++l+++ + s ++
  CTQ29476.1 131 PQHNCLHQLWSSLSTSEKD 149
                 6777777777665555553 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.1e-11   1.8e-08       8      61 ..      58     111 ..      51     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 1.1e-11
                 HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSS CS
      MarR_2   8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkR 61 
                 +++L  L   +   + ++el  +lg s+ +++ri ++L+++G++err++++D+R
  CTQ29476.1  58 FMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRR 111
                 56777777777778899************************************9 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.4e-08   2.3e-05       9      68 .]      61     121 ..      56     121 .. 0.87
   2 ?   -1.5   0.0       2.3   3.8e+03      37      48 ..     160     171 ..     150     174 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.4e-08
      HTH_27   9 Lhlirhrrrrkkl.adlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                 L +++ +++ +++ ++l+ +l  + +++  + ++L+++G++er +++ drr  +++lT+kG
  CTQ29476.1  61 LITLESQENHSIQpSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKG 121
                 55566666667777899999999999999*******************************9 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.3
      HTH_27  37 yslkkLtekGLv 48 
                 + l++++e G++
  CTQ29476.1 160 SRLDQMEEEGVL 171
                 456777777877 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   3.5e-07   0.00057      22      54 ..      72     104 ..      55     116 .. 0.82
   2 ?   -1.4   0.0       1.4   2.3e+03      42      52 ..     162     172 ..     152     176 .] 0.71

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.5e-07
                 HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET CS
   HTH_Crp_2  22 ltqeelAsmlGltretvsrilseLkreglisrg 54 
                 +   el+  lG++r   +ri  eL+++g+i+r+
  CTQ29476.1  72 IQPSELSCALGSSRTNATRIADELEKRGWIERR 104
                 56679**************************65 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.4
                 HHHHHHTTSEE CS
   HTH_Crp_2  42 lseLkreglis 52 
                 l ++++eg++ 
  CTQ29476.1 162 LDQMEEEGVLA 172
                 67888888875 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   4.4e-07   0.00072       6      69 ..      61     125 ..      57     130 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4.4e-07
      HTH_34   6 lsyLas..vdeadfvelkealeatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreaf 69 
                 l +L s  + +++++el+ al+ +  n    ++ Lek g+ie++ + +++ ++ +l++T++G++  
  CTQ29476.1  61 LITLESqeNHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDR-RCLHLQLTEKGHQFL 125
                 555655568899*******************************9999888.9**********9865 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.6e-05     0.026      13      48 .]      67     102 ..      53     102 .. 0.87
   2 ?    2.6   0.0     0.061     1e+02      35      47 ..     159     171 ..     155     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
      HTH_24  13 qknprisqreLAerlglSpstvnrrlkrLeeeGlIk 48 
                 q+n +i  +eL+ +lg S+++ +r  ++Le+ G+I+
  CTQ29476.1  67 QENHSIQPSELSCALGSSRTNATRIADELEKRGWIE 102
                 4577899****************************7 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.061
      HTH_24  35 nrrlkrLeeeGlI 47 
                 + rl+++eeeG++
  CTQ29476.1 159 LSRLDQMEEEGVL 171
                 689********95 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.3e-06    0.0086       2      58 ..      49     107 ..      48     116 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.3e-06
                 HHCHHHHHCCCHCHHHH..HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB   2 qklGLseyEakvYlaLl..klgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58 
                 ++ G++e+ + + ++L   ++ + + +e++ +lg +r+++ ++  +Le++G++er+++ 
  CTQ29476.1  49 KAQGINETLFMALITLEsqENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESD 107
                 566777777777777776566777899****************************9975 PP

>> FtsK_gamma  Ftsk gamma domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00026      0.42      35      61 ..      87     113 ..      82     114 .. 0.91
   2 ?    2.8   0.0     0.065   1.1e+02      40      49 ..     162     171 ..     160     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
  FtsK_gamma  35 RAarlidqLeeeGiVgpaegskpReVl 61 
                  A+r+ d+Le++G ++  e+   R  l
  CTQ29476.1  87 NATRIADELEKRGWIERRESDNDRRCL 113
                 599****************99999765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.065
  FtsK_gamma  40 idqLeeeGiV 49 
                 +dq+eeeG+ 
  CTQ29476.1 162 LDQMEEEGVL 171
                 69******97 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.2e-05     0.036      19      51 ..      72     104 ..      58     105 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.2e-05
                 -BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  19 ltlselArrtglpkStvhRlLqtLvelGyveqd 51 
                    sel+ ++g +++++ R+   L+++G++e+ 
  CTQ29476.1  72 IQPSELSCALGSSRTNATRIADELEKRGWIERR 104
                 4679**************************986 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   7.3e-05      0.12      38      75 .]      92     127 ..      81     127 .. 0.86
   2 ?   -1.9   0.0         2   3.3e+03      37      48 ..     161     172 ..     157     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.3e-05
                 HHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHHH CS
        PadR  38 LkrLekeglveseweesgegpprkyYrlTdaGrrelae 75 
                  ++Lek g++e++++++  +++  + +lT++G++ l+e
  CTQ29476.1  92 ADELEKRGWIERRESDN--DRRCLHLQLTEKGHQFLRE 127
                 579**********9984..77777889*******9986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
                 HHHHHHHTTSEE CS
        PadR  37 aLkrLekeglve 48 
                  L+++e+eg+++
  CTQ29476.1 161 RLDQMEEEGVLA 172
                 589999999875 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   8.3e-05      0.14      11      58 ..      58     104 ..      47     108 .. 0.91
   2 ?   -2.9   0.0       5.5     9e+03      40      50 ..     153     163 ..     142     166 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.3e-05
                 HHHHHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        Rrf2  11 lhallyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksv 58 
                 + al+ L+++e+++ ++ +e++   + s++ + +i  +L+k g+++ +
  CTQ29476.1  58 FMALITLESQENHS-IQPSELSCALGSSRTNATRIADELEKRGWIERR 104
                 57899999999987.******************************865 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.5
                 HHHHHHHHHHH CS
        Rrf2  40 sylekilakLr 50 
                 ++ +k+l++L 
  CTQ29476.1 153 HITRKLLSRLD 163
                 45566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1429.86
//
Query:       CTQ29477.1  [L=390]
Description: multidrug efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-16   59.3   0.8    4.9e-16   58.4   0.8    1.5  1  HlyD             HlyD membrane-fusion protein of T1SS
    7.3e-15   54.8   8.5    2.4e-10   40.0   0.7    2.4  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    4.4e-14   53.1   3.8    9.1e-11   42.4   0.1    2.7  2  HlyD_3           HlyD family secretion protein
    3.9e-07   29.8   1.1    3.9e-07   29.8   1.1    3.6  4  Biotin_lipoyl_2  Biotin-lipoyl like
     0.0038   17.0   0.0      0.062   13.1   0.0    2.3  2  Biotin_lipoyl    Biotin-requiring enzyme
     0.0081   16.4   0.3       0.03   14.6   0.0    2.0  2  Orf78            Orf78 (ac78)


Domain annotation for each model (and alignments):
>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.8   1.6e-19   4.9e-16       2      78 ..      36     345 ..      35     347 .. 0.89

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 1.6e-19
                 SEEEEEEEEEE........................................................................................ CS
                 xxxxxxxxxxx........................................................................................ RF
        HlyD   2 lavfvawaala........................................................................................ 12 
                 +a +++w+++                                                                                         
  CTQ29477.1  36 VAYGIYWFLVLrhyeetddayvagnqvqimaqvagsvtkvwadntdyvqkgdplvtldrtdaqqafekaktqlaasvrqtrqqminskqlqanidvkkt 134
                 677888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  CTQ29477.1 135 alaqaqadlnrriplgaanligreelqhardtvasaqaeldvaiqqynanqaivlgtrleqqpavlqaatevrnawlalqrtqivspisgyvsrrsvqp 233
                 88888888888888888888888888888888888888888888888999999999999999999999999999999999******************* PP

                 ..........................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSB......................EEEEEEEEEEEET CS
                 ..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxxxxx RF
        HlyD  13 ..........................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispd......................rvpvrvvvekaqg 63 
                                           et+l ++r+gqp++v++d +++++  k+tg+Vvg +++                      r+pvr++++++q 
  CTQ29477.1 234 gaqigtttplmavvpatnlwidanfkETQLAHMRIGQPATVISDIYGDDV--KYTGKVVGLDMGtgsafsllpaqnatgnwikvvqRLPVRIELDEKQL 330
                 **************************************************..*********************************************** PP

                 TEEEESSSS-TTEEE CS
                 xxxxxxxxxxxxxxx RF
        HlyD  64 pyyplriglkagalv 78 
                   +plrigl+  + v
  CTQ29477.1 331 AEHPLRIGLSTLVEV 345
                 *********976665 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   1.7   2.9e-07   0.00088      19      98 ..      61     138 ..      55     153 .. 0.68
   2 !   40.0   0.7   8.2e-14   2.4e-10      93     181 ..     200     289 ..     158     293 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.9e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  19 larvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalkakkklkkke..lleaarerLrllgvseeqiae 98 
                 ++++ a+v+G v+k+ ++   d V+kG+pL++l+ ++   aq+++ +a+++  ++ +++  ++ ++++   +++v+++++a+
  CTQ29477.1  61 QVQIMAQVAGSVTKVWAD-NTDYVQKGDPLVTLDRTD---AQQAFEKAKTQLAASVRQTrqQMINSKQLQANIDVKKTALAQ 138
                 67999*************.99************9876...777777777755554333322233333333345555555544 PP

  == domain 2  score: 40.0 bits;  conditional E-value: 8.2e-14
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX CS
    HlyD_D23  93 eeqiaelektgkvqktvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgk.tfeGkv 181
                  ++ +e+++   + +++++ +pisG+V +++v+ G  + + ++l+ +    ++W++a+  e+qla +++gq+++v  + + ++ +++Gkv
  CTQ29477.1 200 LQAATEVRNAWLALQRTQIVSPISGYVSRRSVQPGAQIGTTTPLMAVVPATNLWIDANFKETQLAHMRIGQPATVISDIYGDDvKYTGKV 289
                 44445666666778999**********************************************************999998764778877 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.7    0.0002      0.61       2      61 ..      64     131 ..      63     146 .. 0.81
   2 !   42.4   0.1   3.1e-14   9.1e-11       2      80 ..     218     296 ..     217     338 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiip........pdtllveakvpaadlgsikkkgqkvtlkl 61 
                 + A v+G v+++ + + ++vq+gd+l+++          +++ ++ a+v +++ + i++k+ ++++++
  CTQ29477.1  64 IMAQVAGSVTKVWADNTDYVQKGDPLVTLDRtdaqqafeKAKTQLAASVRQTRQQMINSKQLQANIDV 131
                 779**************************998888887667888888888888888876666666655 PP

  == domain 2  score: 42.4 bits;  conditional E-value: 3.1e-14
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkld.qgsdytlkgkierisptv 80 
                 + +p++G v+  +v++g  +   ++l+ ++p  +l+++a   +++l+ ++ +gq++t+  d  g d +++gk++ ++  +
  CTQ29477.1 218 IVSPISGYVSRRSVQPGAQIGTTTPLMAVVPATNLWIDANFKETQLAHMR-IGQPATVISDiYGDDVKYTGKVVGLDMGT 296
                 89***********************************************7.**********888889******9887644 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   1.1   1.3e-10   3.9e-07       2      50 .]      61     109 ..      60     109 .. 0.96
   2 ?    2.2   0.6     0.056   1.7e+02      34      48 ..     130     142 ..     112     145 .. 0.72
   3 ?   -3.6   0.4       3.4     1e+04      36      48 ..     172     184 ..     167     185 .. 0.73
   4 ?   -0.1   0.1      0.29   8.7e+02       3      21 ..     216     234 ..     212     237 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.3e-10
  Biotin_lipoyl_2   2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50 
                      +v+I a+v+G V+++     ++V++Gd L++lD ++ q a  +a+ qla
       CTQ29477.1  61 QVQIMAQVAGSVTKVWADNTDYVQKGDPLVTLDRTDAQQAFEKAKTQLA 109
                      79******************************************99985 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.056
  Biotin_lipoyl_2  34 Dsralqlalaqaeaq 48 
                      D +++  alaqa+a+
       CTQ29477.1 130 DVKKT--ALAQAQAD 142
                      55555..55556665 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.4
  Biotin_lipoyl_2  36 ralqlalaqaeaq 48 
                       +l++a++q +a+
       CTQ29477.1 172 AELDVAIQQYNAN 184
                      4677788887765 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.29
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdG 21 
                      ++I +p+sG V++  V+ G
       CTQ29477.1 216 TQIVSPISGYVSRRSVQPG 234
                      6899*******99888766 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.1e-05     0.062      42      73 .]      61      92 ..      60      92 .. 0.94
   2 ?    1.4   0.0     0.099   2.9e+02      44      71 ..     217     244 ..     215     246 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.1e-05
                   EEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 42 emeieapkaGvvkeilvkeGdtvevgdllaki 73
                   +++i a++aG v+++ +++ d v+ gd+l+++
     CTQ29477.1 61 QVQIMAQVAGSVTKVWADNTDYVQKGDPLVTL 92
                   6799*************************986 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.099
                    EEEBSSSEEEEEESSTTTEEE-TTCEEE CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtvevgdlla 71 
                    +i +p +G+v+   v+ G+++ + ++l+
     CTQ29477.1 217 QIVSPISGYVSRRSVQPGAQIGTTTPLM 244
                    7999999***999999999999999987 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     1e-05      0.03      50      95 ..       8      52 ..       1      61 [. 0.69
   2 ?   -2.2   0.5       1.7   5.2e+03      54      54 ..     117     117 ..      90     144 .. 0.45

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1e-05
       Orf78 50 tekesnaaekaqalnillisllavvcvlvllyviyYfvilrerqks 95
                ++ ++   +k+++ +  l+ l  +++++ + y iy+f++lr+ +++
  CTQ29477.1  8 QTPQQP-GSKKGKRKGALLLLTLLFIIIAVAYGIYWFLVLRHYEET 52
                333333.455555566666666778899999**********98876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
       Orf78  54 s 54 
                 +
  CTQ29477.1 117 Q 117
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1454  (0.0810977); expected 358.6 (0.02)
Passed bias filter:                      785  (0.0437838); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 2970.00
//
Query:       CTQ29478.1  [L=512]
Description: multidrug efflux system protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-53  181.2  37.9    2.6e-53  181.2  37.9    2.0  2  MFS_1           Major Facilitator Superfamily
    0.00038   18.9  26.2     0.0029   16.0   0.3    4.0  5  OATP            Organic Anion Transporter Polypeptide (OATP) 
  ------ inclusion threshold ------
       0.15   12.0   0.2        2.5    8.0   0.0    2.6  2  Herpes_US9      Alphaherpesvirus tegument protein US9
       0.23   10.0  32.3      0.067   11.7   6.5    3.6  3  MFS_2           MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.2  37.9   5.7e-57   2.6e-53       1     352 [.      19     413 ..      19     414 .. 0.89
   2 !    4.0   1.0    0.0044        20     150     179 ..     477     504 ..     460     510 .. 0.76

  Alignments for each domain:
  == domain 1  score: 181.2 bits;  conditional E-value: 5.7e-57
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 l+la+f+  l+++i+++a+p ++a +lg+s s+  +++t ++++ a++++++G+l+ r+G  +++l++ ++fa++++++ + s++  +l+++rv+qG+ 
  CTQ29478.1  19 LSLATFMQVLDSTIANVAIP-TIAGNLGSSLSQGTWVITSFGVANAISIPITGWLAKRVGEVKLFLWSTTAFAIASWACGV-SNSLtMLIFFRVIQGIV 115
                 5799****************.******************************************************999996.77777************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 ag l+p++++l+   +p+ +r+ a++l+s+++ +++i+gp+lgg++++++ W ++f+i+ ++++ ++++   l + +++e k++  + ++         
  CTQ29478.1 116 AGPLIPLSQSLLLSNYPPAKRSIALALWSMTVIVAPICGPILGGYISDNYHWGWIFFINVPIGVAVVLM--TLQTLRNRETKTEQRRIDGvglalliig 212
                 *****************************************************************9665..44444444444444444446899***** PP

       MFS_1 189 .......................................kgtgpaplvpawkallkdpvlwillialllf...ffgfsglltllplylqevlglsglll 245
                                                        + t   p+v+ ++++++++    + i++l++    + ++g+ +llp +lqev+g++ +  
  CTQ29478.1 213 igslqvmldrgkeldwfssneiiiltivavvaisflivwELTDDNPIVD-LSLFKSRN----FTIGCLCIslaYMLYFGAIVLLPQLLQEVYGYT-ATW 305
                 **************************************99999999**9.88888888....44444444122567788****************.899 PP

       MFS_1 246 aglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt....ssavllllvlvliGfglgfvfpsllalasdlappeeagtasgl 340
                 agl++a ++++ +il++++gr++++l    ++ l  +++++ a+++++ a+t     +  +++++ ++ Gf+++++f +l++++ + +ppe+ ++as+l
  CTQ29478.1 306 AGLASAPVGVIPVILSPIIGRFAHKLD---MRRLVTFSFIMYAVCFYWRAWTfepgMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPPERLAAASSL 401
                 9999*********************66...67777777777777777777774446556666669999******************************* PP

       MFS_1 341 fntagslggalg 352
                  n++++l+g++g
  CTQ29478.1 402 SNFTRTLAGSIG 413
                 **********99 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0044
       MFS_1 150 Wravfyilaivsllafvlfllllpeepper 179
                    +f+i a++++l+  l+l+++ ++p + 
  CTQ29478.1 477 ANEIFWISAAIFILL--LGLVWFARPPFSA 504
                 5668***********..7789999998765 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   1.5   0.00037       1.7       3      83 ..      16      96 ..      14     103 .. 0.93
   2 !   16.0   0.3   6.5e-07    0.0029     132     195 ..     102     165 ..      95     170 .. 0.90
   3 !   13.6   2.1   3.5e-06     0.016     288     377 ..     262     348 ..     230     355 .. 0.87
   4 ?   -2.9   0.3      0.34   1.5e+03     469     513 ..     370     414 ..     368     420 .. 0.78
   5 ?   -2.3   0.1      0.22     1e+03      39      79 ..     472     493 ..     468     505 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00037
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  3 lvllsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslll 83
                 ++lsl++++q++ s++ +++i ti  + + + s+  ++ +s+ ++n++ i + +++++r+   ++  +++  +a++s  +
  CTQ29478.1 16 TIALSLATFMQVLDSTIANVAIPTIAGNLGSSLSQGTWVITSFGVANAISIPITGWLAKRVGEVKLFLWSTTAFAIASWAC 96
                5789**************************************************************999999999998766 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 6.5e-07
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 132 vllfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllkly 195
                 ++++++  +++Gi a p+++l +s +  n  + + ++ l++++++ i+ p++G +lG+++   y
  CTQ29478.1 102 LTMLIFFRVIQGIVAGPLIPLSQSLLLSNYPPAKRSIALALWSMTVIVAPICGPILGGYISDNY 165
                 457777799*************************************************998777 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 3.5e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 288 krllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvsllsl 377
                 ++l+k++ f++ +l+  + ++l+ G i+ lp+ l++ ++ +a+ A l  ++v ++ ++l  ++g +     kl++++l+++++++  +++
  CTQ29478.1 262 LSLFKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGVIPVILSPIIGRF---AHKLDMRRLVTFSFIMYAVCF 348
                 7899999************************************99999999999999999988876...356778888888888777765 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 0.34
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 469 lvsflgalgrvpallvilRcVkkedksfalGlqlllirllgliPg 513
                 +  f +a+  +p ++++l   ++e  + a +l+ +   l g i  
  CTQ29478.1 370 IQGFAVACFFMPLTTITLSGLPPERLAAASSLSNFTRTLAGSIGT 414
                 566778888899999999999999999888888888888777755 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 0.22
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  39 gliassneignillilfvsYfggrghrPrwigigallmalg 79 
                 gli s+nei  i +++f+                     lg
  CTQ29478.1 472 GLIISANEIFWISAAIFILL-------------------LG 493
                 66666666666666666543...................33 PP

>> Herpes_US9  Alphaherpesvirus tegument protein US9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.1   4.5e+02      19      51 ..     214     247 ..     209     253 .. 0.67
   2 ?    8.0   0.0   0.00056       2.5      18      42 ..     324     348 ..     322     354 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.1
  Herpes_US9  19 GkyqsklrrRkkr.tfCvitliivllvAvlsaaF 51 
                 G  q  l r k    f    +ii  +vAv++ +F
  CTQ29478.1 214 GSLQVMLDRGKELdWFSSNEIIILTIVAVVAISF 247
                 5555555555543135566789999999999888 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00056
  Herpes_US9  18 iGkyqsklrrRkkrtfCvitliivl 42 
                 iG++ +kl  R+  tf +i+  +++
  CTQ29478.1 324 IGRFAHKLDMRRLVTFSFIMYAVCF 348
                 8**********************99 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   6.5   1.5e-05     0.067     256     338 ..      45     126 ..       7     129 .. 0.80
   2 ?    0.0   0.2     0.053   2.4e+02     152     195 ..     147     190 ..     137     205 .. 0.40
   3 ?   10.8   7.5     3e-05      0.13     220     331 ..     264     383 ..     261     396 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.5e-05
       MFS_2 256 g.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsm 338
                 g + s+ +++ + + ++++++ip+  +lakr g  +++l+++++ ++ +  + +   ++l++++++ vi g+ +g +  l  s+
  CTQ29478.1  45 GsSLSQGTWVITSFGVANAISIPITGWLAKRVGEVKLFLWSTTAFAIASWACGVS--NSLTMLIFFRVIQGIVAGPLIPLSQSL 126
                 556678899*******************************987654444444443..688888889999999888887777766 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.053
       MFS_2 152 ilafllvlilgg...lkserkgylifaliialLmllgviivvlgtke 195
                 +++ ++ +   g     +   g+   +++i + + ++v++++l+t +
  CTQ29478.1 147 VIVAPICGPILGgyiSDNYHWGW---IFFINVPIGVAVVLMTLQTLR 190
                 33333333333311112222222...223333333333333333333 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 3e-05
       MFS_2 220 vfrnraflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlll.......q 310
                 +f++r f i  l+++la++ ++    ll   l+ v g ++++a + ++ v +  ++ +p++ ++a +l+ ++++ +++++++v +    +        +
  CTQ29478.1 264 LFKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYGyTATWAGLASAPVGVIPVILSPIIGRFAHKLDMRRLVTFSFIMYAVCFYWRAWTfepgmdfG 362
                 688888888888888888888888888888888888888888888888887777788899999999999999988888888888777777778666655 PP

       MFS_2 311 psnlllflvllviagfgvgva 331
                 +s +  f+  +++a f++ + 
  CTQ29478.1 363 ASAWPQFIQGFAVACFFMPLT 383
                 555555555555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       935  (0.0521501); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 3736.76
//
Query:       CTQ29479.1  [L=558]
Description: 2-isopropylmalate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-73  248.1   0.0    1.4e-73  247.7   0.0    1.2  1  HMGL-like   HMGL-like
    1.4e-21   76.7   0.0    2.4e-21   76.1   0.0    1.3  1  LeuA_dimer  LeuA allosteric (dimerisation) domain


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.7   0.0   1.6e-77   1.4e-73       2     264 .]      31     311 ..      30     311 .. 0.98

  Alignments for each domain:
  == domain 1  score: 247.7 bits;  conditional E-value: 1.6e-77
                 -EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B.....--EE-SSHHHHHHHHH....TT-SEEEEEE CS
   HMGL-like   2 vkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkar...ilalvrarekdikaavealkgagakrvhvfi 97 
                 +++++t+LRDG+qal+++++ ++kl+  + L e g++eiEv fp+as++df++vr+++++  +++   i++l +ar+ +i +++eal+ga  ++vh+++
  CTQ29479.1  31 PRWLSTDLRDGNQALAEPMDSARKLQFWDLLLECGFKEIEVAFPSASQTDFNFVRQLIDEQRIPEdvtIQVLTQARDPLILRTFEALRGARRATVHLYN 129
                 689************************************************************98899******************************* PP

                 ES-HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-E.......TTT-BTTTBS--HHHHHHHHHHHHHH......T-SEEEEEETTS---HHHHHHHHHH CS
   HMGL-like  98 atselhlkaklkkdreevakkaeeavkaarslgkd.......velsledasrtdleflaevveaaeea......GatriniaDtvGvltPneaaelisa 183
                 at  l+++ ++++d++ev++ a++a++++r+  ++       +e+s+e++  t++ef++e++ea++++       ++++n+++tv+v tPn++a++i++
  CTQ29479.1 130 ATAPLFRELVFGMDKAEVIALATRATRLIRQQCEQqpetrwqYEYSPETFCFTEPEFALEICEAVADVwqpcaeRPMIVNLPATVEVNTPNVYADQIEY 228
                 *********************************999*************************************99************************ PP

                 HHHHS-...GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT-B----HHHHHHHHHHH CS
   HMGL-like 184 lkervk..dkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealgvdtgldlqklrsiaalv 264
                 + ++ +   +v++svH+Hnd+G++va +++Av+aGadrv+g+++G+Ger+Gn++l++l+++l+ +g+d++l ++++ ++ ++v
  CTQ29479.1 229 FCRHFSrrGEVCISVHPHNDRGTGVASAELAVMAGADRVEGCLFGNGERTGNVCLVTLAMNLYSQGIDPELRFEQMNRVVEVV 311
                 ******999*******************************************************************9998876 PP

>> LeuA_dimer  LeuA allosteric (dimerisation) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0   2.6e-25   2.4e-21       1     130 [.     420     549 ..     420     551 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 2.6e-25
                 XXXXXXXXXXXXXXXXXXX.--EEEEEEEEEEETTCEEEEEEEEEE.TTEEEEEEEE-SSHHHHHHHHHHHHHHHT-EEEEEEEE--TT-TT--EEEEE CS
  LeuA_dimer   1 evtdedlealvkdelleae.erlkleklqvssgedelstatvklevkdgeekeasaeGnGpvdAllnAlrkalgvdikLldYsvhaitegtdaqaevrV 98 
                 e+t   l++l++++++ +    l+l+++q  s++d++ + + +l+   ge++  +++GnG ++A+   l+ ++ +++ ++dY++h++++ +d  + +++
  CTQ29479.1 420 EMTHHALWQLFRTRYGLQAqPALTLLDYQSASQQDGQLSLQATLRH-HGETRRLQGQGNGLLSAAASGLSALFRQPFMIKDYHEHTLGARSDSRSVAYI 517
                 678899*********998879***********99988888888888.9*************************************************** PP

                 EEE--GGGEEEEEEEESSHHHHHHHHHHHHHH CS
  LeuA_dimer  99 elevddgkkvsgvGvdsdiveASlkAlisaln 130
                 ++ + +g++++gvG+d+d+ +ASl+Al +al 
  CTQ29479.1 518 RCVFPQGESYWGVGIDNDVARASLQALCNALS 549
                 *****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4079.79
//
Query:       CTQ29480.1  [L=255]
Description: putative helix-turn-helix, AraC type [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-21   76.1   1.6    2.7e-21   75.6   0.8    1.7  2  HTH_18          Helix-turn-helix domain
      2e-12   46.9   0.1    1.8e-05   24.7   0.0    2.8  3  HTH_AraC        Bacterial regulatory helix-turn-helix protein
    1.8e-07   31.1   0.1    4.1e-07   30.0   0.1    1.6  1  AraC_binding    AraC-like ligand binding domain
    3.3e-07   29.9   0.3    5.4e-07   29.2   0.3    1.3  1  Cupin_2         Cupin domain
     0.0047   16.6   0.3     0.0047   16.6   0.3    2.0  2  AraC_binding_2  AraC-binding-like domain
  ------ inclusion threshold ------
      0.055   13.7   0.1       0.11   12.7   0.1    1.5  1  WXG100          Proteins of 100 residues with WXG
      0.095   12.5   0.5        9.1    6.2   0.0    2.4  2  HTH_23          Homeodomain-like domain
        0.3   11.4   3.6       0.99    9.8   3.5    2.0  1  HTH_31          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         5   1.1e+04      11      20 ..     154     163 ..     152     167 .. 0.70
   2 !   75.6   0.8   1.2e-24   2.7e-21       2      80 ..     176     252 ..     175     253 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5
                 HHHHHHHHHT CS
      HTH_18  11 tLqrlfkrvl 20 
                 tL+rl+++v 
  CTQ29480.1 154 TLRRLCQQVR 163
                 7888887764 PP

  == domain 2  score: 75.6 bits;  conditional E-value: 1.2e-24
                 HHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   2 aaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 a+a  +s+rtL+r+f++++ lt +e++rr +l +A  +L++  g+sv ++Al+lG+++ s+Fs++fr+++g+ Ps+y r
  CTQ29480.1 176 AKACSMSERTLNRHFQQQTSLTWSEWVRRAKLMEALVRLAQ--GHSVLRVALELGYGSHSAFSAMFRRVMGVAPSDYFR 252
                 78999**********************************75..**********************************76 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.9   4.2e+03       8      18 ..     152     162 ..     150     163 .. 0.62
   2 !   19.1   0.0   4.7e-07     0.001      12      41 ..     173     202 ..     165     203 .. 0.90
   3 !   24.7   0.0     8e-09   1.8e-05       9      41 ..     218     251 ..     213     252 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.9
                 T--HHHHHHHT CS
    HTH_AraC   8 nltiediAdel 18 
                 + t++++++++
  CTQ29480.1 152 SETLRRLCQQV 162
                 45666666665 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 4.7e-07
                 HHHHHHTTSSHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC  12 ediAdelgfSrsyFsrlFkketGmtPsqyr 41 
                 ++ A ++ +S++++ r F+++t  t s++ 
  CTQ29480.1 173 GQAAKACSMSERTLNRHFQQQTSLTWSEWV 202
                 6889************************97 PP

  == domain 3  score: 24.7 bits;  conditional E-value: 8e-09
                 --HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   9 ltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                  ++ ++A elg+ S s Fs  F++++G+ Ps y 
  CTQ29480.1 218 HSVLRVALELGYgSHSAFSAMFRRVMGVAPSDYF 251
                 5899****************************96 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1   1.8e-10   4.1e-07      17     117 ..      28     113 ..      16     143 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.8e-10
                   EEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE---GGGGGGG---EEETTEEE..E---TTTHHHHHHH CS
  AraC_binding  17 pphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrwlyfegelleriledssilagapllpalledeelaqllral 113
                   ++h+hd +++  +++G++r+    + + ++pG  ++lp g+pH ++  +  + + r+l +++ + +++ ++ +i +              + llr+l
    CTQ29480.1  28 DWHQHDCAQLLHILSGVVRVATPVGYWVVPPGRGVWLPAGTPHALRMTG--NVAARTLFIDPLARADLPAGCQIVQI-------------TPLLREL 109
                   68***********************************************..99999999999888888775555444.............4444444 PP

                   HHHH CS
  AraC_binding 114 frll 117
                   +   
    CTQ29480.1 110 IVSS 113
                   3333 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.3   2.4e-10   5.4e-07       5      70 ..      21      85 ..      18      86 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 2.4e-10
                EETTEEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEEE CS
     Cupin_2  5 lppGesapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllvv 70
                ++ G+++ +h H+ + +++++l+G +++      +++ +G  v  pagtpH++r tg+ +ar l++
  CTQ29480.1 21 YAHGDQEDWHQHDCA-QLLHILSGVVRVATPVGYWVVPPGRGVWLPAGTPHALRMTGNVAARTLFI 85
                78899999******9.************966557****************************9987 PP

>> AraC_binding_2  AraC-binding-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   2.1e-06    0.0047      53     128 ..      32     123 ..      19     139 .. 0.82
   2 ?   -0.3   0.1      0.33   7.4e+02      90     143 ..     193     243 ..     167     249 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.1e-06
  AraC_binding_2  53 ddfylvqlplsGraeveqggrevvlgpgdavvldpgrpyrlrwsadceqlvlrip................ralLerplraplrfaprldld 128
                      d+ +++ +lsG ++v +  + +v+ pg++v l +g p  lr+++++   +l i+                + lL++ ++  l +a r  l+
      CTQ29480.1  32 HDCAQLLHILSGVVRVATPVGYWVVPPGRGVWLPAGTPHALRMTGNVAARTLFIDplaradlpagcqivqiTPLLRELIVSSLALAERYALA 123
                     58999*************************************************99886666666655555566666666666666666555 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.33
  AraC_binding_2  90 pyrlrwsadceqlvlripralLerplraplrfaprldldsgagalwrrllrslv 143
                     +++l+ws+ ++   l+   + L r ++++  ++ +l+l  g  +++ ++ r ++
      CTQ29480.1 193 QTSLTWSEWVRRAKLM---EALVRLAQGHSVLRVALELGYGSHSAFSAMFRRVM 243
                     4444444444433222...22334444566666666666666666666666665 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1     5e-05      0.11      25      62 ..     153     192 ..     149     196 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5e-05
                 HHHHHHHHHHHHC.GCGCT.HHHCHHHHHHHHHHHHHHHH CS
      WXG100  25 delqrlkaevdal.qsgWs.Gaaadafqaefeewkqaaqk 62 
                 + l+rl ++v +  +++Ws G+aa+a+ +    +++++q+
  CTQ29480.1 153 ETLRRLCQQVREApGEAWSsGQAAKACSMSERTLNRHFQQ 192
                 7899*********9**************999999999887 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0041       9.1      18      36 ..     170     188 ..     155     194 .. 0.85
   2 ?    4.3   0.1     0.017        38       6      29 ..     203     229 ..     198     242 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0041
      HTH_23  18 lsvreIAreLgvsrrTvyr 36 
                 +s  ++A+++ +s+rT+ r
  CTQ29480.1 170 WSSGQAAKACSMSERTLNR 188
                 88889***********998 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.017
      HTH_23   6 eRlr...illllaeGlsvreIAreLgv 29 
                 +R++   +l  la+G+sv ++A eLg 
  CTQ29480.1 203 RRAKlmeALVRLAQGHSVLRVALELGY 229
                 56664447777778********99995 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.5   0.00044      0.99       7      53 ..     160     207 ..     152     224 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00044
      HTH_31   7 ralReraG..LsqeevAerlgvsestlsrlEqGrrgrpspavlealara 53 
                 ++ Re+ G  +s  ++A+++ +se tl+r  q +    +++ + + a +
  CTQ29480.1 160 QQVREAPGeaWSSGQAAKACSMSERTLNRHFQQQT-SLTWSEWVRRAKL 207
                 4556666555*************************.5999966655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2008.53
//
Query:       CTQ29481.1  [L=171]
Description: S-ribosylhomocysteinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-62  207.6   0.1    8.6e-62  207.4   0.1    1.0  1  LuxS      S-Ribosylhomocysteinase (LuxS)


Domain annotation for each model (and alignments):
>> LuxS  S-Ribosylhomocysteinase (LuxS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.4   0.1   4.8e-66   8.6e-62       2     150 ..       4     152 ..       3     156 .. 0.97

  Alignments for each domain:
  == domain 1  score: 207.4 bits;  conditional E-value: 4.8e-66
                 GGGGGB-TTT--SSEEEEEEEEEETTSEEEEEEEEE-S-TTTB---HHHHHHHHHHHHHHHHHHHTTTTEEEEEEEE-TTSSEEEEEEESS--HHHHHH CS
        LuxS   2 ieSFtvdHtklkapgvrvsrkdkvekgdvittfDlRlkkPneevletaalHtlEHllAtflRnhleklkdkiidigPmGCrTGfYlllageleseevve 100
                 ++SFtvdHt+++ap+vrv++k+++++gd+it+fDlR++ Pn+ev++++++HtlEHl+A+f+R+hl+++ ++iidi+PmGCrTGfY++l+g++++++v++
  CTQ29481.1   4 LDSFTVDHTRMEAPAVRVAKKMNTPHGDEITVFDLRFCVPNQEVMPERGIHTLEHLFAGFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVAD 102
                 69************************************************************************************************* PP

                 HHHHHHHHHHC.TTGSCSTT-STTTSTTTTS--HHHHHHHHHHHHHH-HC CS
        LuxS 101 llketledileveeeeevpganekeCGnykdhsLeeAkelakkvleevle 150
                 ++k++++d+l+v++++++p++n ++CG+y++hsLeeA+++a++++e+ ++
  CTQ29481.1 103 AWKAAMADVLKVKDQNQIPELNVYQCGTYTMHSLEEAQDIARHIIERDVR 152
                 *********************************************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1333.54
//
Query:       CTQ29482.1  [L=518]
Description: gamma-glutamate-cysteine ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.2e-172  571.9   0.0     6e-172  571.4   0.0    1.2  1  Glu_cys_ligase  Glutamate-cysteine ligase


Domain annotation for each model (and alignments):
>> Glu_cys_ligase  Glutamate-cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  571.4   0.0  3.4e-176    6e-172       1     372 []       9     380 ..       9     380 .. 0.99

  Alignments for each domain:
  == domain 1  score: 571.4 bits;  conditional E-value: 3.4e-176
                     HHHHHHSGG..GGTT-EEEEEEEEEEE-TTSSB--S-S-GGG--TTT-SSEEE-SBTTEEEEE---BS-HHHHHHHHHHHHHHHHTSSTT-EE-- CS
  Glu_cys_ligase   1 lkllkkekkkkllkkikrGiErEslRvteegklaqtphpkalGsalthksittDfsEallEfiTpveksveelleeLedlhrfvakkledellwp 95 
                     l++l+k+++  +l++i+rG+ErE+lRv+++g+la+t hp alGsalthk+ittDf+EallEfiTpv+ ++e++l++++d+hr++a++l+de++wp
      CTQ29482.1   9 LAWLEKHPQ--ALQGIQRGLERETLRVNADGTLATTGHPPALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDVHRYTARQLGDERMWP 101
                     568888877..9*********************************************************************************** PP

                     SSS-SS-STTGGS-B----SSHHHHHHHHHHHHHHHHH-SGGGG--EEEEEEE--HHHHHHCH-S--TTHHHHHHHHHHHHHHHHHHHHTTHHHH CS
  Glu_cys_ligase  96 lSmPcvlekeeeipiaqygssnagklktvYRegLklrYGkkmqviaGvHyNfSlseelwealkeeeekekskefiseaylalirnfrrlgwlllY 190
                     lSmPc++   ++i++aqyg+sn+g+lkt+YRegLk+rYG+ mq+i+GvHyNfSl+ ++w+a    e++e+ ke+is++y++ irn++r+gw+++Y
      CTQ29482.1 102 LSMPCYIAPGQDIELAQYGTSNVGRLKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKCGVEDAESGKEAISAGYFRSIRNYYRFGWVIPY 196
                     *******************************************************************9999************************ PP

                     HH--BSEEEGGG----.-.S--EE-TTSEEE-TT-SBGGGSTTSS-SGBCTTTT--SS-HHHHHHHHHHHHTSB-HHHHCT-SEETTEE-SS-SB CS
  Glu_cys_ligase 191 LfGaspavdksflkgr.k.lelekldketlylpyatsLRlsdlGYtnkaqkklkisynsleeYveslkkaiktpseeyekigvkkdgeykqlntn 283
                     LfGaspa+++sfl+g+ + l++e+++++++ylpyatsLRlsdlGYtnk+q++l i++n+l+eYv+ lk+aiktpseey+kig++kdg+y q+n+n
      CTQ29482.1 197 LFGASPAICSSFLQGKpTtLPFEETGNGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLHEYVAGLKRAIKTPSEEYAKIGLQKDGKYLQINSN 291
                     ****************7579*************************************************************************** PP

                     SSSSGGGSB-SEEEE----TT--HHHHHHHH---EEEEEEEE--TTSTTS--HHHHHHHHHHHHHHHHS------HHHHHHHHHHHHHH CS
  Glu_cys_ligase 284 vLqienEfYssirpkrvtksgekpleaLerrGveYiEvRalDvnpfsplGieeeqlrfldlfllyclleespelseeeleeikknlekv 372
                     +LqienE+Y++irpkrvt++ge+p++aL r G+eYiEvR+lD+npfsp+G++++q+rfldlf+++c+l+++pe+s++el ++++n+++v
      CTQ29482.1 292 ILQIENELYAPIRPKRVTRRGETPSDALLRGGIEYIEVRSLDINPFSPIGVDAQQVRFLDLFMVWCVLADAPEMSSDELLCTRTNWNRV 380
                     **************************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3907.66
//
Query:       CTQ29483.1  [L=142]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-10   41.9   6.2    1.7e-10   41.4   6.2    1.2  1  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   6.2   9.7e-15   1.7e-10       4     115 ..      26     131 ..      21     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 9.7e-15
  SNARE_assoc   4 evll..vaaGvlfglllgtlvtslgallGaslayllgrylgrkalrrkllsekrvkalerlverygflallllrllpivPrdlvnyvaGltrvsfkrF 99 
                  ev+l  ++++ + ++++ +l++ +g +lG++++ +lgr +    lr+    +++ ++++ +++ryg++ +lll + p+v  dl++++aG +r+s+ + 
   CTQ29483.1  26 EVVLvaMLLAGVSHPWWLVLIATIGNSLGGVTNVILGRLFP---LRK---TSRWQERAAGWLKRYGAV-TLLLSWAPVV-GDLLCLLAGWMRISWGPV 115
                  55552333444449************************999...333...345566678999999985.78899****9.****************** PP

  SNARE_assoc 100 flatfiGsipwalvya 115
                  +++ ++G++++ + +a
   CTQ29483.1 116 LFFLCLGKALRYIAIA 131
                  ********99987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1158.86
//
Query:       CTQ29484.1  [L=188]
Description: putative hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-29  102.6   0.0    2.8e-29  102.5   0.0    1.0  1  HAD_2           Haloacid dehalogenase-like hydrolase
    9.6e-17   62.0   0.1    3.3e-16   60.2   0.1    1.7  1  Hydrolase       haloacid dehalogenase-like hydrolase
    1.7e-05   25.3   0.1    2.5e-05   24.8   0.1    1.3  1  HAD             haloacid dehalogenase-like hydrolase
      5e-05   23.3   0.1    0.00015   21.8   0.1    1.8  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   6.2e-33   2.8e-29       1     176 [.       8     183 ..       8     185 .. 0.91

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 6.2e-33
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee....kieellrkyneekkkkevkpydgvkelLeeLkeag 95 
                 +iFD+DgT+ldte+++ qa+ne+l +yg+  ++e+ +  l g ++  + + ++e ++ +     + +e  + +++ + + +v+p++ ++e+++   + +
  CTQ29484.1   8 LIFDMDGTILDTEPTHRQAWNEVLGRYGM-RFDEQAMVALNGSPTWRIAQAIIELNQADLdphrLAQEKTQAVKAMLLD-NVRPLP-LIEVVKAW-HGR 102
                 69*************************99.******************9999998887775555555555566666666.*****9.66899998.99* PP

       HAD_2  96 yklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                   + + T ++++++e  l++lg+ +yF+ +v +++v ++KP+p++++ + e++++ +e++++++D  ++++aak+ag++++
  CTQ29484.1 103 RPMSVGTGSESAVAEALLAHLGLRHYFSAVVAADHVVNHKPAPDTFLLCAERMGVAPEKCVVFEDADFGLQAAKRAGMDAV 183
                 *******************************************************************************97 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.1   7.4e-20   3.3e-16       4     210 .]       8     179 ..       5     179 .. 0.88

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 7.4e-20
                 EEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   4 vvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtval 102
                 ++fD+dGT++++ep ++++++++                           +   ++ a      +++ g+p w  a+       a i+  q++   + l
  CTQ29484.1   8 LIFDMDGTILDTEPTHRQAWNEV---------------------LGRY--GMRFDEQAM-----VALNGSPTWRIAQ-------AIIELNQADLDPHRL 71 
                 89*********************.....................3333..444455555.....67***********.......888888888888888 PP

                 HTTHHHHHHHHH.HTHHBHTTHH.HHHHHHHHTTE.EEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEE CS
                 xxxxxxxxxxxx.xxxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 103 lqaralavftia.dplkvkpeaa.eavasLkaagi.evvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamVG 197
                  q +  av ++  d+  v+p    e+v++++  g  ++ + tg++++ ae+++ +lG ++yf+av+a+d ++  kp p+ ++  ++++++ pe++++++
  CTQ29484.1  72 AQEKTQAVKAMLlDN--VRPLPLiEVVKAWH--GRrPMSVGTGSESAVAEALLAHLGlRHYFSAVVAADHVVNHKPAPDTFLLCAERMGVAPEKCVVFE 166
                 888888888888789..7765555*******..6657************************************************************** PP

                 SSHHHHHHHHHTT CS
                 xxxxxxxxxxxxx RF
   Hydrolase 198 DgvnDaaalaaAg 210
                 D   +++a+++Ag
  CTQ29484.1 167 DADFGLQAAKRAG 179
                 ***********98 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   5.6e-09   2.5e-05       2     131 ..       9     136 ..       8     176 .. 0.60

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 5.6e-09
         HAD   2 lfDfDgTLldgdsle..lllrfllrrgaprl....wralreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpklldp.gale 92 
                 +fD+DgT+ld+++ +  ++ + +l+r + r       al+  +   ++  + +l         +   a+l+  +la+e  ++v ++ +    +p  + e
  CTQ29484.1   9 IFDMDGTILDTEPTHrqAWNE-VLGRYGMRFdeqaMVALNGSPTWRIAQAIIEL--------NQ---ADLDpHRLAQEKTQAVKAMLLDN-VRPlPLIE 94 
                 8**********8888874444.55554433300003333333333333333333........22...33333333333333333333333.45789*** PP

         HAD  93 llaahr.aaGdrvvvvSgglrplvepllaelg....adevlate 131
                 +++a++ ++  +  v +g+ + ++e+lla+lg    + +v+a +
  CTQ29484.1  95 VVKAWHgRR--PMSVGTGSESAVAEALLAHLGlrhyFSAVVAAD 136
                 ***776355..99*******************655555555442 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   3.3e-08   0.00015       3      48 ..     141     185 ..     139     186 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.3e-08
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEE CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLV 48 
                      KP+p ++   +e++g++pe++++  D  +  +++A++aG++ v V
      CTQ29484.1 141 HKPAPDTFLLCAERMGVAPEKCVVFEDA-DFGLQAAKRAGMDAVDV 185
                     6***************************.************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1326.25
//
Query:       CTQ29485.1  [L=104]
Description: Lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-17   62.4   1.8    4.6e-17   62.1   1.8    1.1  1  BON       BON domain


Domain annotation for each model (and alignments):
>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   1.8   2.6e-21   4.6e-17       1      68 [.      37     104 .]      37     104 .] 0.98

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 2.6e-21
                 EHHCCHHHHHHHHHHHCHTTGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEEEE CS
         BON   1 dDaeiaakvkaalakdggldaadinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnelkvr 68 
                 dD+ +++kvk+al +d+++++++i+V++ +G+V LsG+V s++ + +Ave++r+v GV+ V n+l+++
  CTQ29485.1  37 DDTVVTTKVKTALFNDKDIKSSEISVQTFKGRVQLSGFVSSAESAKRAVEVTRRVQGVRMVENDLRIK 104
                 79***************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 850.70
//
Query:       CTQ29486.1  [L=61]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 499.50
//
Query:       CTQ29487.1  [L=61]
Description: pleiotropic regulatory protein for carbon source metabolism [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-27   94.7   1.5    2.6e-27   94.5   1.5    1.0  1  CsrA      Global regulator protein family
  ------ inclusion threshold ------
      0.031   14.6   0.6       0.16   12.3   0.4    1.8  2  S1        S1 RNA binding domain


Domain annotation for each model (and alignments):
>> CsrA  Global regulator protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   1.5   2.9e-31   2.6e-27       1      52 [.       1      52 [.       1      53 [. 0.99

  Alignments for each domain:
  == domain 1  score: 94.5 bits;  conditional E-value: 2.9e-31
                -EEEEEETT-EEEETTTEEEEEEEEETTEEEEEEE--TTS-EEEHHHHHHHT CS
        CsrA  1 MLvLtRkkgEsIvIgddIeitvlevegnqvrlgIeAPkevkIlReEiyeeiq 52
                ML+LtR++gE+++Igd++++tvl+v+gnqvr+g++APkev+++ReEiy++iq
  CTQ29487.1  1 MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQ 52
                ***************************************************8 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.2   0.00018       1.6      46      64 ..       8      26 ..       4      32 .. 0.83
   2 ?   12.3   0.4   1.8e-05      0.16       3      40 ..      13      50 ..      11      60 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00018
                HHHCEETTEEEEEEEEEEE CS
          S1 46 pdevlkvGdevkvkvlkvd 64
                 +e+l +Gdev v vl+v+
  CTQ29487.1  8 VGETLMIGDEVTVTVLGVK 26
                679999***********97 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.8e-05
                TTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSS CS
          S1  3 ekgevveGeVtsvtkgGafVelgngvegfvpaselsrd 40
                ++g++v+ +V  v    +++ + ++ e+ v+++e+ ++
  CTQ29487.1 13 MIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQR 50
                789**********9777777777***********9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 517.53
//
Query:       CTQ29488.1  [L=875]
Description: alanyl-tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-238  792.9   0.0   1.9e-238  792.5   0.0    1.1  1  tRNA-synt_2c   tRNA synthetases class II (A)
    1.5e-32  112.9   3.4    1.5e-32  112.9   3.4    1.9  1  DHHA1          DHHA1 domain
    1.8e-18   66.3   0.2    8.4e-18   64.2   0.2    2.3  1  tRNA_SAD       Threonyl and Alanyl tRNA synthetase second add
    0.00086   18.9   1.4    0.00086   18.9   1.4    1.6  2  Leu_zip        Leucine zipper
     0.0095   15.3   2.2       0.17   11.2   1.4    2.2  2  Dynamitin      Dynamitin
  ------ inclusion threshold ------
      0.044   14.0   2.7        6.7    7.0   0.3    2.7  2  Peptidase_M23  Peptidase family M23
        0.2   11.7   0.2       0.73    9.9   0.1    2.0  2  HypA           Hydrogenase/urease nickel incorporation, metal
        0.5    9.9   5.4        3.5    7.2   0.9    2.3  2  PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subun
       0.85    9.0   5.3       0.31   10.4   1.1    2.0  2  DUF4618        Domain of unknown function (DUF4618)
          2    7.7   8.2       0.17   11.2   2.7    1.9  2  DUF3450        Protein of unknown function (DUF3450)
          3    6.6   8.3       0.61    8.9   2.7    2.0  2  Spc7           Spc7 kinetochore protein
        4.7    7.7  11.7        0.2   12.1   2.7    2.4  2  ZapB           Cell division protein ZapB


Domain annotation for each model (and alignments):
>> tRNA-synt_2c  tRNA synthetases class II (A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  792.5   0.0  1.2e-241  1.9e-238       1     552 []       7     556 ..       7     556 .. 0.99

  Alignments for each domain:
  == domain 1  score: 792.5 bits;  conditional E-value: 1.2e-241
                   HHHHHHHHHHHCTT-EEE----SS-SSSTTCSS--SGGGGGHHHHTTSSCGGSSSEEEEEEEEE-EETTEEGGGGTTTSSS--SEEEEEEEEESSSS CS
  tRNA-synt_2c   1 eirekFldfFekkgHtvvksssvvpendptllfvnAgmaqfkpiflgkeakpklkravnsQkciRagGkhnDlenVGktarHhTfFeMlGnfsfgdY 97 
                   eir++FldfF++kgH+vv+sss+vp+ndptllf+nAgm+qfk++flg + k++++ra+++Q+c+RagGkhnDlenVG+tarHhTfFeMlGnfsfgdY
    CTQ29488.1   7 EIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLD-KRNYSRATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDY 102
                   8************************************************.*********************************************** PP

                   -HHHHHHHHHHHHH..TTTT--GGGEEEEEETTEHHHHHHHHHTTTTEGGGEEEE-HH.......HHEEESSSSEEEEEEEEEEEECETTSHHCHCC CS
  tRNA-synt_2c  98 fkeeaiefawellt..kelgldkerlyvtvfeeddeaveiweklvgvpeerilrfgek.......dnfwemgdtgpcgpcseiyydrgeeigkrkaa 185
                   fk++ai++awellt  +++ l+ke+l+vtv+e+ddea++iw + vgvp+eri+r+g++       dnfw+mgdtgpcgpc+ei++d+g++i++ +++
    CTQ29488.1 103 FKQNAIKYAWELLTgeNWFALPKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNkgapfasDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPG 199
                   **************9999**************************************999**********************************9999 PP

                   CCTTCTCCHEEEEEEEEEEEEEESTTSHEEEEEEEEEEEEEEHHHHHHHHTTHSSGGGSCCTHHHHHHHHHHHT--TCSTCCHHHHHHHHHHHHHHH CS
  tRNA-synt_2c 186 seveadddrvleiwnlvfmqfnreedgtlkpLpkksidtGmglerlvavLqevrsnydtdlfvpvieaieeisgatyedkdetdealrviaDHvral 282
                   s++e d+dr++eiwn+vfmqfnr++dgt++pLpk+s+dtGmgler++avLq+v+snyd dlf+ +i+ +++++g    ++d t+++lrviaDH+r++
    CTQ29488.1 200 SPEE-DGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRDLIASVAKVTG----ATDLTNKSLRVIADHIRSC 291
                   9999.*********************************************************************....78999************** PP

                   HHHHHTT--SSSSHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHTTTGCCHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC CS
  tRNA-synt_2c 283 afaladGvvpsnegrgYvlRrllRravrhakkLglkekflaklvavvvevlgdvypelkekeekveeiieeEeerFakTlerGlklleelikklkkk 379
                   af++adGv+psne+rgYvlRr++Rra+rh+++Lg+k++f+ klva +++v+g++  elk+++++ve+++++Eee+Fa+TlerGl+ll+e+++klk +
    CTQ29488.1 292 AFLVADGVIPSNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVLKTEEEQFARTLERGLALLDEELSKLK-G 387
                   *********************************************************************************************88.8 PP

                   SEEXHHHHHHHHHCHXXXHHHHHHHHHCTTXEEXHHHHHHHHHHHHHHHCCHHSXSSXXXXXXXXTTSHCHHCCTSTTTXXXXXXTSXXXXXXSEEE CS
  tRNA-synt_2c 380 kelsgedafkLydtyGfPvdltkeiaeekglkvdiegfekameeqrerskkekkekklikkdvealkelkkteeflgyeeleaeakvlallkdkefv 476
                   ++l+ge+af+LydtyGfPvdlt+++++e+++kvd+ gfe+ameeqr+r+++++  ++    d++a+ +++ ++ef gy++le ++kv+al+ d++ v
    CTQ29488.1 388 DTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARESSGFGA----DYNAMIRVDGASEFKGYDHLELNGKVTALFIDGKAV 480
                   *************************************************98888877....************************************ PP

                   EEEEEEETTEEEESEEXXXXSSSSCSXXXEEEEESSEEEEESEEEEETTEEEEEXSS.XSXXXTTSEEEEEEXHHH CS
  tRNA-synt_2c 477 eeveegeevgvvLdrTpfYaesGGqigDeGliekegaefrvkdvqkakgvvlhkgkleegklkvgdkvkaevdeer 552
                   ++v++g+e++v+Ld+TpfYaesGGq gD+G +++ g +f+v+d+qk+++ + h+gk+ +g+lkvgd+v+a+vde+r
    CTQ29488.1 481 DSVSAGQEAVVILDQTPFYAESGGQVGDKGELKGAGFSFAVSDTQKYGQAIGHIGKVASGSLKVGDAVQADVDEAR 556
                   *************************************************************************975 PP

>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9   3.4   9.9e-36   1.5e-32       2     138 .]     733     871 ..     732     871 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.9 bits;  conditional E-value: 9.9e-36
                 HHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHTCEEECTCEEEEEECHCCHHHHHHHHHHHHHHTHGBTTCEEEEEEEECTEEEEEEEESSH...SS-HH CS
       DHHA1   2 eslneerkelekeleelkealaklkaeellekaeevkgvkvlvaevgeewdagalgiaadklksklkkpvivfvakeegdkvkvsarskkd...gvdag 97 
                 ++  e++++lekel++lke++a+++ ++l +kaee++gvk+lv+e+ +++++++l++++d+lk++l+++++v++++ +g kv+++a+++kd   +v+ag
  CTQ29488.1 733 RAALERTRQLEKELQQLKEQAAAQESANLSSKAEEINGVKLLVSEL-TGVEPKMLRTMVDDLKNQLGSTIVVLATVADG-KVSLIAGVSKDvtdRVKAG 829
                 677899****************************************.********************************.******************* PP

                 HHHHHHHHHTTCCEEEE.TCEEEEEEEHCHHHHHHHHHHHHH CS
       DHHA1  98 elakeaaaklgggGGGH.dlAaGagipaekleealealeeai 138
                 el+  +a+++gg+GGG+ d+A+++g++a+ l++al+ ++ ++
  CTQ29488.1 830 ELVGMVAQQVGGKGGGRpDMAQAGGTDASALPAALASVKGWV 871
                 **************************************9886 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.2   5.6e-21   8.4e-18       1      44 []     653     696 ..     653     696 .. 0.99

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 5.6e-21
                 EEEEEETT.EEEEESS---SBGGGC-SEEEECCECCCTCEEEEE CS
    tRNA_SAD   1 vrvvsiGdisvelCgGtHvpnTgeIgafkilseesiakglrRIy 44 
                 vrv ++Gd+s+elCgGtH  +Tg+Ig+f+i+se++ a+g+rRI+
  CTQ29488.1 653 VRVLRMGDFSTELCGGTHAARTGDIGLFRITSESGTAAGVRRIE 696
                 9******************************************7 PP

>> Leu_zip  Leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.3       3.1   4.6e+03      93     104 ..     357     368 ..     344     391 .. 0.38
   2 !   18.9   1.4   5.8e-07   0.00086     116     198 ..     692     776 ..     680     804 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.1
     Leu_zip  93 EkiaefEekefk 104
                 E++ + Ee++f+
  CTQ29488.1 357 EQVLKTEEEQFA 368
                 222222222221 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 5.8e-07
     Leu_zip 116 kkkLePlnegGgaeLLkkeierLkeenekLkerlkelEkqatsaleeksklekalkelqkelgekkdeke..nskeiskleekla 198
                   ++e ++  G++++L+ + ++L++  + Lk   ++l +++  ale  ++lek+l++l++++ ++++++   +++ei+ ++  ++
  CTQ29488.1 692 VRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLEKELQQLKEQAAAQESANLssKAEEINGVKLLVS 776
                 5688999999***********************************************9887777654433224455554444443 PP

>> Dynamitin  Dynamitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.053        79     107     152 ..     345     393 ..     306     402 .. 0.83
   2 !   11.2   1.4   0.00012      0.17      89     145 ..     731     788 ..     711     828 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.053
   Dynamitin 107 leeEvekakeaakes..eeeeldpvelaeqleslqkqLeel.eellged 152
                 + +E+++++++ ++   +eee+   +l + l+ l ++L++l  + l+ +
  CTQ29488.1 345 AGDELKQQQAQVEQVlkTEEEQFARTLERGLALLDEELSKLkGDTLDGE 393
                 5678888888888778778888888899************974444433 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00012
   Dynamitin  89 eketleqklqRLqrEveeleeEvekakeaakeseeeeldpvela.eqleslqkqLeel 145
                 +   + ++ + L  E+++l+e+ +++++a+ +s++ee++ v+l+ ++l+ ++ ++ ++
  CTQ29488.1 731 KVRAALERTRQLEKELQQLKEQAAAQESANLSSKAEEINGVKLLvSELTGVEPKMLRT 788
                 6677899**********************99999999966666657776665443333 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.3    0.0045       6.7      13      65 ..     495     550 ..     484     555 .. 0.91
   2 ?    6.1   0.1    0.0083        12      32      75 ..     796     838 ..     785     847 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0045
                    T-EEEESSSEEEEEEEEETTTEEEEEEEECTCEEEEEEEESEES...S-TTEEE-T CS
  Peptidase_M23  13 gtpVlAaadGtVvfagkkegyGnvviidhgdgystlyahlskis...vkegqkVka 65 
                     tp +A + G+V  +g+ +g+G    + ++++y + ++h+ k++   +k+g+ V+a
     CTQ29488.1 495 QTPFYAESGGQVGDKGELKGAGFSFAVSDTQKYGQAIGHIGKVAsgsLKVGDAVQA 550
                    6899*************99********************9998778899***9987 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0083
                    TTEEEEEEEE..CTCEEEEEEEESEESS-TTEEE-TTCEEEEEBST CS
  Peptidase_M23  32 gyGnvviidh..gdgystlyahlskisvkegqkVkaGqvIGtvgst 75 
                    ++G ++++ +  +dg ++l+a +sk   ++ ++VkaG+ +G v ++
     CTQ29488.1 796 QLGSTIVVLAtvADGKVSLIAGVSK---DVTDRVKAGELVGMVAQQ 838
                    4455555444459999999999999...99***********99854 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       7.1   1.1e+04      41      56 ..     105     120 ..     103     128 .. 0.81
   2 ?    9.9   0.1   0.00049      0.73      14      53 ..     755     795 ..     745     814 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 7.1
                 HHHHHHHHHHHHCC.T CS
        HypA  41 peaLefafellaegtv 56 
                 ++a+++a+ell+ ++ 
  CTQ29488.1 105 QNAIKYAWELLTGENW 120
                 67899*****998876 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00049
                 HHHHHCC.TT..EEEEEEEEEETTCT--HHHHHHHHHHHHC CS
        HypA  14 veeeake.aaarkvtkvkvevGelsgvepeaLefafellae 53 
                 ++e+a+  ++a++++ vk+ v el+gvep++L+++ + l++
  CTQ29488.1 755 AQESANLsSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKN 795
                 455553337799*********************99887764 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.3     0.015        23      98     135 ..     347     385 ..     339     389 .. 0.86
   2 ?    7.2   0.9    0.0023       3.5      86     131 ..     707     752 ..     696     757 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.015
  PI3K_P85_iSH2  98 kelhsskekLeedlkqqkeee.releReinalkpellqL 135
                    +el+++++++e+ lk++ e+  r+leR +  l  el +L
     CTQ29488.1 347 DELKQQQAQVEQVLKTEEEQFaRTLERGLALLDEELSKL 385
                    89**************99986379***999999998887 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0023
  PI3K_P85_iSH2  86 lqenleqlksrlkelhsskekLeedlkqqkeeereleReinalkpe 131
                    l+ +++ql++  + l+  + +L e++++  e+ r+le+e+++lk +
     CTQ29488.1 707 LHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLEKELQQLKEQ 752
                    788899999999*******************************976 PP

>> DUF4618  Domain of unknown function (DUF4618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.38   5.7e+02      55      94 ..     347     386 ..     339     402 .. 0.57
   2 ?   10.4   1.1   0.00021      0.31      29     105 ..     692     769 ..     687     773 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.38
     DUF4618  55 sileksskkqleqakaeLqeweekeekklekLeqqleqln 94 
                 + l++++++  + +k e ++ + ++e+ l+ L+++l +l+
  CTQ29488.1 347 DELKQQQAQVEQVLKTEEEQFARTLERGLALLDEELSKLK 386
                 4444444443344455555555555555555555555554 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00021
     DUF4618  29 IqdtedstakkvrklLq.qyeklktvisileksskkqleqakaeLqeweekeekklekLeqqle.qlnakvqklqeeln 105
                 ++ +e+ t + + ++L+ q ++l+++ + l+  s++  e+++a L+ +  ++ek+l++L++q+  q  a++ ++ ee+n
  CTQ29488.1 692 VRRIEAVTGEGAMAILHaQSDQLNDIAQLLKGDSHNLGEKVRAALERT-RQLEKELQQLKEQAAaQESANLSSKAEEIN 769
                 567899999999999974779***************9999****9876.57999*****99975267789999999987 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3       1.4   2.1e+03      63      80 ..     349     366 ..     340     385 .. 0.48
   2 ?   11.2   2.7   0.00011      0.17      34     111 ..     713     795 ..     696     803 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.4
     DUF3450  63 levyneqlerlvasqeqe 80 
                 l+ +++q+e+++++ e++
  CTQ29488.1 349 LKQQQAQVEQVLKTEEEQ 366
                 222222222222222222 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00011
     DUF3450  34 qsqkkidklddekqellaeyralkeeleslevyneqlerlvasqe.qeiasleeqieeieeierelv....pllekmidrLeq 111
                 q +   + l+ ++ +l +++ra+ e++ +le++ +ql+++ a+qe ++++s  e+i+ ++ + +el+     +l++m+d+L++
  CTQ29488.1 713 QLNDIAQLLKGDSHNLGEKVRAALERTRQLEKELQQLKEQAAAQEsANLSSKAEEINGVKLLVSELTgvepKMLRTMVDDLKN 795
                 4444455567778899999*******************9999997358999999****9999998863333467788998875 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3      0.16   2.3e+02     153     191 ..     344     383 ..     332     393 .. 0.57
   2 ?    8.9   2.7   0.00041      0.61     145     229 ..     708     797 ..     701     821 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.16
        Spc7 153 edkelLekqeeeldellpeleeeka.eleeeleklqeaae 191
                 +  ++L++q+++++++l+  ee++a +le+ l+ l e+  
  CTQ29488.1 344 SAGDELKQQQAQVEQVLKTEEEQFArTLERGLALLDEELS 383
                 4445566666666666666666555445555555555333 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00041
        Spc7 145 eenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles....idkeeLeelreelaelk.aeieekkkelaelqeql 229
                 + + ++l++ ++lL+ + ++l e + +  e+  +le+el++l+e+a+  es    ++ ee++ ++  ++el  +e + +++++++l++ql
  CTQ29488.1 708 HAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLEKELQQLKEQAAAQESanlsSKAEEINGVKLLVSELTgVEPKMLRTMVDDLKNQL 797
                 556667777778888888888888888888888888888888885555444445566788888887776653145555566666666666 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.7      0.87   1.3e+03      36      63 ..     348     372 ..     344     388 .. 0.50
   2 ?   12.1   2.7   0.00014       0.2       8      45 ..     727     764 ..     713     792 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.87
        ZapB  36 elkeenreleeeneqlkeereawqerlk 63 
                 elk++++++e+ ++    e e++ + l+
  CTQ29488.1 348 ELKQQQAQVEQVLKT---EEEQFARTLE 372
                 455555555543333...3333333333 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00014
        ZapB   8 qLEskiqkaidtitlLqmeieeLkeeneelkeenrele 45 
                  L +k+ +a+++ ++L +e+++Lke+ ++ ++ n   +
  CTQ29488.1 727 NLGEKVRAALERTRQLEKELQQLKEQAAAQESANLSSK 764
                 57789999999999999999999999877666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (875 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1032  (0.0575604); expected 358.6 (0.02)
Passed bias filter:                      666  (0.0371465); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.45
# Mc/sec: 5803.71
//
Query:       CTQ29489.1  [L=166]
Description: regulatory protein for RecA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-31  109.6   0.4    2.7e-31  108.5   0.1    1.6  2  RecX      RecX family


Domain annotation for each model (and alignments):
>> RecX  RecX family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.15   2.7e+03     101     114 ..      21      34 ..       6      43 .. 0.53
   2 !  108.5   0.1   1.5e-35   2.7e-31       5     117 ..      50     162 ..      46     166 .] 0.95

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.15
                 HHHHTT--HHHHHH CS
        RecX 101 fLarrGFssevire 114
                  La r +s ++ r+
  CTQ29489.1  21 ILAMRDHSEQELRR 34 
                 44444443333332 PP

  == domain 2  score: 108.5 bits;  conditional E-value: 1.5e-35
                 T--HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHH----HHHHHHHHHTTT--HHHHHHHHT..TS-HHHHHHHHHHHHHHHTTTS-HHHHHHHHHHH CS
        RecX   5 gfpeevieavierlkeeglldDerfAesfvrsrlrsrgyGprrikqeLkqkGiseelieqale..eldeeeqarelaekklkklkkeedekekqklvrf 101
                 +++++++e+v++++ e+++ldD+rf+ +f+ sr+r +gyGp ri+qeL qkGi++++++qa++  ++d+ + are+a++k++++  ++  +ek k++rf
  CTQ29489.1  50 DVTPDELEQVVAWCIENRYLDDNRFVGQFIASRSR-KGYGPARIRQELSQKGIARQVVDQAMRecDIDWVSLAREQAQRKYGEPL-PSAFTEKVKVQRF 146
                 567899****************************8.***************************999******************5.899********** PP

                 HHHTT--HHHHHHHHH CS
        RecX 102 LarrGFssevirevlk 117
                 L++rG+ +e i+e+++
  CTQ29489.1 147 LLYRGYLMEDIQEIWR 162
                 *************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1197.71
//
Query:       CTQ29490.1  [L=352]
Description: DNA strand exchange and recombination protein with protease and nuclease activity [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.6e-142  472.5   2.5   4.3e-142  472.2   2.5    1.1  1  RecA      recA bacterial DNA recombination protein
    2.2e-12   46.8   0.7    6.3e-12   45.3   0.7    1.6  1  Rad51     Rad51
    8.4e-10   38.4   0.3    3.5e-08   33.1   0.3    2.7  1  ATPase    KaiC
    9.9e-06   25.4   0.0    1.6e-05   24.7   0.0    1.5  1  AAA_24    AAA domain
    3.8e-05   23.7   0.0    8.7e-05   22.5   0.0    1.7  1  ATPase_2  ATPase domain predominantly from Archaea
     0.0004   20.8   0.0    0.00071   20.0   0.0    1.3  1  AAA_16    AAA ATPase domain
    0.00052   19.6   0.6      0.036   13.7   0.6    2.5  1  AAA_25    AAA domain
  ------ inclusion threshold ------
      0.013   14.4   0.0      0.021   13.7   0.0    1.2  1  AAA_35    AAA-like domain
      0.014   15.5   0.0      0.027   14.5   0.0    1.7  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
      0.017   14.3   0.6      0.026   13.7   0.6    1.2  1  PAXNEB    PAXNEB protein
      0.032   14.6   0.0      0.072   13.5   0.0    1.6  1  AAA       ATPase family associated with various cellular acti
      0.034   13.7   0.0      0.067   12.8   0.0    1.5  1  CobU      Cobinamide kinase / cobinamide phosphate guanyltran
      0.035   14.0   0.0       0.12   12.2   0.0    1.9  2  MobB      Molybdopterin guanine dinucleotide synthesis protei
      0.037   14.3   0.0      0.075   13.3   0.0    1.6  1  AAA_22    AAA domain
       0.05   13.6   0.0       0.16   12.0   0.0    2.0  2  AAA_14    AAA domain
      0.059   13.2   0.0      0.099   12.5   0.0    1.3  1  TK        Thymidine kinase


Domain annotation for each model (and alignments):
>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  472.2   2.5  3.8e-145  4.3e-142       1     263 []       9     270 ..       9     270 .. 0.99

  Alignments for each domain:
  == domain 1  score: 472.2 bits;  conditional E-value: 3.8e-145
                 HHHHHHHHHHHHHH-TTSS--TTS--.-----EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEESS----HHHHH CS
        RecA   1 kaleaalkqiekkfGkgsimklgdekeklkvetissGslaldialGiGGlpkGriieiyGpessGkttlalhaiaeaqkkggvaafidaehaldpkyak 99 
                 kal+aal qiek+fGkgsim+lg+++ +++vetis+Gsl+ldialG GGlp+Gri+eiyGpessGkttl+l++ia aq++g+++afidaehaldp+ya+
  CTQ29490.1   9 KALAAALGQIEKQFGKGSIMRLGEDR-TMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVYAR 106
                 799********************999.7*********************************************************************** PP

                 HTT--GGG-EEE--SSHHHHHHHHHHHHTTT--SEEEEE-TTT---STT-----------HHHHHHHHHHHHHHHHHTTT--EEEEEEE---------- CS
        RecA 100 klGvdidellvsqpdtGeqaleiadalvrsgaidlivvdsvaalvpkaeieGemgdskvglqarlmsqalrkltgaisksntvvifinqirekiGvmfg 198
                 klGvdid+ll sqpdtGeqalei+dal rsga+d+ivvdsvaal+pkaeieGe+gds++gl ar+msqa+rkl+g++++snt++ifinqir+kiGvmfg
  CTQ29490.1 107 KLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 205
                 *************************************************************************************************** PP

                 -------HHHHHHH-SEEEEEEEES---------EEEEEEEEEEESSS----EEEEEEETTTEE- CS
        RecA 199 npetttGGralkfyasvrldvrrieeikekeevignktkvkvvknkvappfkeaeldilygeGis 263
                 npetttGG+alkfyasvrld+rri+++ke+++v+g++t+vkvvknk+a+pfk+ae++ilygeGi+
  CTQ29490.1 206 NPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIAAPFKQAEFQILYGEGIN 270
                 ***************************************************************96 PP

>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.7   5.6e-15   6.3e-12      14     247 ..      36     263 ..      18     270 .. 0.76

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 5.6e-15
                 HSS-EE--S-HHHHHHH.TSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHTT--HHHHGGGEEEEE- CS
       Rad51  14 sellqlttGskklDelL.gGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaerykldkeevlenvayaRa 111
                  ++ +++tGs +lD  L  GG++ g i ei+G   sGkt l+ ++  ++q +       + +++id+e ++ p      a + ++d +    n  +   
  CTQ29490.1  36 MDVETISTGSLSLDIALgAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPV----YARKLGVDID----NLLCSQP 120
                 46678*********99956********************9998888887754......589************7....4888899955....5556666 PP

                 -STTHHHHHHHHTHHHHHHS-EEEEEEETTTGGG.CH-------THHHHHHHHHHHH..HHHHHH...HHH--EEEEEEE-------.----------- CS
       Rad51 112 ytiehqeellqqaaallaedkfallivDsvtaly.RtdfsgrgelakRqqklgkllr..tLrkla...defevavvitnqvvaqvdgqaalfsadpkkP 204
                  t e+  e+ +++a    +  + +++vDsv+al  +++    ge+ +  + l+  ++  ++rkla   ++ +  ++  nq+  +++     + ++p+  
  CTQ29490.1 121 DTGEQALEICDALA---RSGAVDVIVVDSVAALTpKAEI--EGEIGDSHMGLAARMMsqAMRKLAgnlKQSNTLLIFINQIRMKIGV----MFGNPETT 210
                 67777777766665...567899********98625554..5677777777765444124677773336778889999***999988....558999** PP

                 -HHHHHHHH-SEEEEEEE-ST..........TEEEEEEES-SSS-S-EEEEEE CS
       Rad51 205 igGlvlahasttRlalrkgkg..........eeRivkvvdsPnlpeleavfai 247
                  gG+ l   +++Rl +r+             e+R+  v +    p ++a f+i
  CTQ29490.1 211 TGGNALKFYASVRLDIRRIGAvkegdnvvgsETRVKVVKNKIAAPFKQAEFQI 263
                 ***************99743334456777766676666666666777777766 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.3   3.2e-11   3.5e-08       2     189 ..      42     226 ..      41     275 .. 0.69

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 3.2e-11
      ATPase   2 ktgIeglDeil.kgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenakslGwdlekleeegklaiidasesaeesaeek 99 
                 +tg   lD  l  gG+p+gr+v i+G   +GKt++ lq +    ++ g+ + f+  e     ++  a++lG+d+++l  ++  +  +a e  +      
  CTQ29490.1  42 STGSLSLDIALgAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA-QREGKTCAFIDAEHALDPVY--ARKLGVDIDNLLCSQPDTGEQALEICDAL---A 134
                 6777789999989*************************77766.666*********99999986..789*****999877333333333333221...2 PP

      ATPase 100 dkedlee.lieelaeaikeikakrvviDsitglayeekeavaReilrqlvrvlkklgvTailvsekss........seeaaggygveefivdgvivLdl 189
                 ++ +++  +++++a    + +++  + Ds  gl     + ++ + +r+l+  lk+ ++  i+++++++         e+++gg++++    +  ++Ld 
  CTQ29490.1 135 RSGAVDViVVDSVAALTPKAEIEGEIGDSHMGL----AARMMSQAMRKLAGNLKQSNTLLIFINQIRMkigvmfgnPETTTGGNALKF---YASVRLDI 226
                 222232202344444555555555555555555....777888888999999999999999999988877777765455555555555...44455555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.5e-08   1.6e-05       5      79 ..      63     152 ..      59     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.5e-08
      AAA_24   5 iliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfp.die........swedfldevvelaaeladyktlviDtidelee 79 
                 + iyGp+ +GKTtl ++        g++ +fid e+ l+ ++a+k+  di         + e+ l+ +++la+  a  +++v+D++  l  
  CTQ29490.1  63 VEIYGPESSGKTTLTLQViaaaqreGKTCAFIDAEHALDPVYARKLGvDIDnllcsqpdTGEQALEICDALARSGA-VDVIVVDSVAALTP 152
                 669****************************************99751555999*999888899999999999998.********988865 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   7.8e-08   8.7e-05      21      59 ..      61      99 ..      58     204 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 7.8e-08
    ATPase_2 21 eiyfiYGpegsGKtaLlkeiienledkdkyviyyialre 59
                +i+ iYGpe+sGKt+L  ++i   +  +k   +++a + 
  CTQ29490.1 61 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 99
                5788**********************9**9999987655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   6.3e-07   0.00071      22     141 ..      58     193 ..      47     196 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.3e-07
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdg..giflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala........... 106
                 + +++v ++G+  +GK++l  ++  a++++g  + f+ ++          ++ +a+ l   ++ + l++++++   ++ + ++++ala           
  CTQ29490.1  58 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGktCAFIDAEHAL-------DPvYARKL-GVDIDNLLCSQPDT---GEQALEICDALArsgavdvivvd 145
                 3448999*************99999999995224444444444.......46699***.76999999999655...55555667777778899999999 PP

      AAA_16 107 avpelagaea..............srllellkrllallsrderplvlvl 141
                 +v++l+++++              + + +++++l+  l++ + +l++++
  CTQ29490.1 146 SVAALTPKAEiegeigdshmglaaRMMSQAMRKLAGNLKQ-SNTLLIFI 193
                 5555555555555566888888888899999999999999.66699988 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.6   3.2e-05     0.036      28      61 ..      55      89 ..      51     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.2e-05
      AAA_25 28 gllpagelallaGapgtGKttlaldlalava.tGk 61
                g lp+g ++ ++G++ +GKttl+l++ +a   +Gk
  CTQ29490.1 55 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQrEGK 89
                55799********************9988764444 PP

>> AAA_35  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.8e-05     0.021      31      70 ..      60      99 ..      57     108 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.8e-05
      AAA_35 31 GalirikapkkmGKtSLlarilakakqqgyktvsldlqla 70
                G ++ i +p+  GKt L  +++a a+++g+  + +d ++a
  CTQ29490.1 60 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 99
                899****************************999998876 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.4e-05     0.027      10      55 ..      71     197 ..      65     340 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.4e-05
                 SSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH.HTTEB-HHHH..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx..................................................... RF
        CbiA  10 vGKTtlaanLaralarrglrVllvDaDpqannlai.leglendiep..................................................... 54 
                 +GKTtl++  ++a +r+g+  + +Da     ++ + + +l  di++                                                     
  CTQ29490.1  71 SGKTTLTLQVIAAAQREGKTCAFIDAEHA--LDPVyARKLGVDIDNllcsqpdtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmgl 167
                 8************************8776..44444888888888889999998888888888888888888888888888888888888888888877 PP

                 .............................C CS
                 .............................x RF
        CbiA  55 .............................d 55 
                                               
  CTQ29490.1 168 aarmmsqamrklagnlkqsntllifinqiR 197
                 555544444444444444444444444440 PP

>> PAXNEB  PAXNEB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.6   2.3e-05     0.026      18      42 ..      40      65 ..      37      76 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.3e-05
      PAXNEB 18 ltStGtpsLDklLgG.GLplGsilli 42
                ++StG+ sLD  Lg  GLp+G i+ i
  CTQ29490.1 40 TISTGSLSLDIALGAgGLPMGRIVEI 65
                89***********978******9866 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.4e-05     0.072       3     106 ..      65     191 ..      63     200 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.4e-05
                 EESSTTSSHHHHHHHHHHHHTHE...EEEEETTTCSSS................STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH......TT CS
         AAA   3 lyGppGtGKTllakavakelgve...fleisgsellsk................yvgesekkirelfkeakekakpsilfiDEidalaksr......sg 76 
                 +yGp   GKT+l  +v+  +++e   +  i++   l+                     +e+ ++ + + a++ a   ++++D + al+++        +
  CTQ29490.1  65 IYGPESSGKTTLTLQVIAAAQREgktCAFIDAEHALDPvyarklgvdidnllcsQPDTGEQALEICDALARSGA-VDVIVVDSVAALTPKAeiegeiGD 162
                 79**************9998533333555555555544566666666666666344444444444444477777.8**************998655433 PP

                 CCCHHHHHHHHHHHHHHHHTTTSSSTEEEE CS
         AAA  77 seseeeervvnqLlteldgvkkkeskvivi 106
                 s+ + + r+++q +++l g  k +s++++i
  CTQ29490.1 163 SHMGLAARMMSQAMRKLAGNLK-QSNTLLI 191
                 3333344444444444444333.2334444 PP

>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.9e-05     0.067       3     124 ..      65     194 ..      63     209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.9e-05
        CobU   3 vtGgarSGKSefAekla...eeskekvvYiATaealDeemaeRiarHrerR.paeWetveepldlaealkeeekkevvLvDcltlwltnllleeeaek. 96 
                 + G+  SGK ++  +++   ++ ++++ +i + +alD  +a+++    ++   ++ +t e+ l++ +al+++ + +v++vD+++ ++ ++  e e  + 
  CTQ29490.1  65 IYGPESSGKTTLTLQVIaaaQREGKTCAFIDAEHALDPVYARKLGVDIDNLlCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDs 163
                 789************996656667899******************99998878999*************999999***********9988887665547 PP

        CobU  97 ....veekleeeveellealkelkatvvlVsn 124
                     + + +++++++l+  lk++++ ++++ n
  CTQ29490.1 164 hmglAARMMSQAMRKLAGNLKQSNTLLIFI-N 194
                 889888899999999999999999888876.3 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011      0.12       1      37 [.      62      98 ..      62     111 .. 0.87
   2 ?   -1.7   0.0       2.2   2.4e+03      75      97 ..     123     145 ..     105     156 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
        MobB  1 vlgivgksgsGKTtLleklipelkarglrvgtiKhah 37
                ++ i g + sGKTtL  ++i++ +++g + + i  +h
  CTQ29490.1 62 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 98
                68899**********************9999986544 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.2
        MobB  75 eeaelsleellarlsevDlvlvE 97 
                  e+ l++ + lar  +vD+++v 
  CTQ29490.1 123 GEQALEICDALARSGAVDVIVVD 145
                 55566777777777778888775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.7e-05     0.075       6     105 ..      61     153 ..      59     200 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.7e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr 104
                 +i+ ++G+  +GKTtl  ++   +++e      +++++f+++ +  ++   +r+l  ++++ l +++++ e+ le +   +r+ av  ++++D +  l+
  CTQ29490.1  61 RIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHALDPVY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV-DVIVVDSVAALT 151
                 57789******************9876......99999***999985554.57777777777777788888888888888888888.******999995 PP

      AAA_22 105 .s 105
                  +
  CTQ29490.1 152 pK 153
                 42 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.6   5.2e+03      90     105 ..      35      50 ..      27      56 .. 0.79
   2 ?   12.0   0.0   0.00014      0.16       3      43 ..      61     101 ..      59     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.6
      AAA_14  90 gknldvivtGSnskll 105
                 + +++ i tGS+s+++
  CTQ29490.1  35 TMDVETISTGSLSLDI 50 
                 45788899***99875 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00014
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderd 43 
                 +i+ i G+  +GKTtl  q+i     + + + +i+ ++  d
  CTQ29490.1  61 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 101
                 7899****************998887788888888887766 PP

>> TK  Thymidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.8e-05     0.099       3      87 ..      62     148 ..      60     160 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.8e-05
          TK   3 ielilgpmfaGKsteLlrrvkryqlaekkvvvik..aakdnRyseg.kvvthdgisleakksktssleeikee.leeedvdvvlvDEaq 87 
                 i  i+gp  +GK+t  l+ +  +q+  k + +i   +a d  y  +  v   + ++ ++     +++ ei ++ +++ +vdv++vD + 
  CTQ29490.1  62 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDaeHALDPVYARKlGVDIDNLLCSQPD--TGEQALEICDAlARSGAVDVIVVDSVA 148
                 6679****************************9722567888987644444444444444..444444444440445569999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2583.39
//
Query:       CTQ29491.1  [L=165]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-59  198.4   1.8    5.4e-59  198.2   1.8    1.0  1  CinA      Competence-damaged protein


Domain annotation for each model (and alignments):
>> CinA  Competence-damaged protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.2   1.8     3e-63   5.4e-59       3     154 ..       8     160 ..       6     161 .. 0.97

  Alignments for each domain:
  == domain 1  score: 198.2 bits;  conditional E-value: 3e-63
        CinA   3 slaeevvkllkkkgltlatAEScTGGllaaaltsvpGaSavfeggvvtYsneaKeelLgvseetleehgavSeevaeemaegarerlgadiavavtGiA 101
                 +l+++++++lk++g+t++tAEScTGG +a+a+t+++G+Sa+fe+g+vtYsneaK++++gvse+tl+ +gavSe+v+ ema ga++ ++ad+a++v+G+A
  CTQ29491.1   8 QLSDKIGRALKARGATVTTAESCTGGWIAKAITDIAGSSAWFERGFVTYSNEAKSQMIGVSEATLRDNGAVSEPVVVEMAIGALRAARADYAISVSGVA 106
                 68899********************************************************************************************** PP

        CinA 102 GpsggteekpvGtvyialagkgg.veveklefegdreeireaavkaALellrel 154
                 Gp+gg+ ekpvGtv++++a+ +g  ++++  f gdre++r++a+++AL+ll+++
  CTQ29491.1 107 GPDGGSVEKPVGTVWFGVASVSGqGVTRRECFAGDREAVRRQATAYALNLLWQQ 160
                 *******************999978999999********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1373.77
//
Query:       CTQ29492.1  [L=292]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-76  255.1   0.0    7.4e-76  254.9   0.0    1.0  1  ZnuA      Zinc-uptake complex component A periplasmic


Domain annotation for each model (and alignments):
>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.9   0.0   4.1e-80   7.4e-76       1     255 [.      26     289 ..      26     290 .. 0.95

  Alignments for each domain:
  == domain 1  score: 254.9 bits;  conditional E-value: 4.1e-80
                 EEESSHHHHHHHHHHHGGGCEEEECS-TTSTTTT----HHHHHHHHHSSEEEESSTTTSGTHHHHHHHHTTCCCEEEEETTTTCCSEBCSS......ES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xx RF
        ZnuA   1 VvattsplgdlvrqvaGdrvevtvLvppgadpHsyeptprdvrklaeAdllvynglelEtwldkllasssqatrvevidlsegveeeeeee......Dp 93 
                 Vv ++s+lgd+++qv+G++v v +Lv p++dpH++ep+p+d + l++Ad++v+ngl+lE wld+l+++s+ + +  v+ +s+gv++++ +e      Dp
  CTQ29492.1  26 VVSSFSVLGDIAQQVGGEHVHVDTLVGPDGDPHTFEPSPKDSALLSKADVVVVNGLGLEGWLDRLIKASGFKGE-LVV-ASKGVKTHTLDEegktvtDP 122
                 99****************************************************************99975455.344.677886666666788889** PP

                 TGGGSHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGTEGEEEESSSTTHHHHHHTT-EEEEEESSSSS....HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxx RF
        ZnuA  94 HiWlspknaiamveniadaLveadpanadtyeanaaayiekLeeldaeireelaeipeekrklvtthdafgylarayglevagiagiste....aaqia 188
                 H W s +n + +++ni d+Lv+adp+++++++   ++yi++L  ld + ++++++ip +krk++t+hdafgy+ ray +++++ +g+s+e    aaq+a
  CTQ29492.1 123 HAWNSAANGALYAQNILDGLVKADPEDKAALTSSGKRYIDQLMSLDGWAKAQFSAIPLAKRKVLTSHDAFGYFGRAYHVTFLAPQGLSSEseasAAQVA 221
                 *************************************************************************************************** PP

                 HHHHHHHHTT-SEEEEETTS-THHHHHHHHHHT-EE.EEE-STSSSTSTTS.TTSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
        ZnuA 189 alieeikeagvkaifveplaspklaetlaeeagvkv.atlysldslgdegs.aetYidmmranleslke 255
                 ali++ik++gv++ f+e++ +p+l++++a+++g++  ++ly+ ++l+++g  a++Y++mmr+n+e +++
  CTQ29492.1 222 ALIKQIKADGVHTWFMENQLDPRLVKQIASATGAQPgGELYP-EALSKPGGvADSYVKMMRHNVELIAN 289
                 *********************************886377***.******999*************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2131.86
//
Query:       CTQ29493.1  [L=287]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-51  174.4  27.1    3.3e-51  174.3  27.1    1.0  1  ABC-3     ABC 3 transport family
  ------ inclusion threshold ------
      0.014   15.0   0.1      0.014   15.0   0.1    3.7  6  FeoB_C    Ferrous iron transport protein B C terminus


Domain annotation for each model (and alignments):
>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.3  27.1   3.7e-55   3.3e-51       2     257 ..      13     272 ..      12     273 .. 0.97

  Alignments for each domain:
  == domain 1  score: 174.3 bits;  conditional E-value: 3.7e-55
       ABC-3   2 yeflqrallasilvslacallgsfvvlrrqsllgdalsHaalpGvalayllgvn....lllgailvgliaavalellkrktklkedtaigivlsvflal 96 
                 + f++ral++ +++sl + +lg+f++lrr+sl+gdalsHa lpGva++yll+      ++lg +++g+++a++ ++++r+t lked++ +     +lal
  CTQ29493.1  13 FGFMRRALVVCLALSLSTTMLGVFLLLRRMSLMGDALSHAILPGVAVGYLLSGMsllaMTLGGFIAGIVVALVAGWVSRRTPLKEDASFAGFYLGSLAL 111
                 569************************************************9998888999************************************** PP

       ABC-3  97 glvlvslikkskvdldsyLfGniltisqedliliaiieavvllllllfwkelllitfdeelAkvegls.vkllkllllalialavvvalqavGviLvia 194
                 g+ lvsl   s+vdl + LfG+il+++++  + ++ ++ ++ll++ l ++ l++  fd +  +v+  + + ll+ l+lal++l  v+  q+ G ++ + 
  CTQ29493.1 112 GVTLVSLRG-SSVDLLHLLFGSILAVDRDAALFVSGVASLTLLCIALCYRGLVSEAFDSAWLQVNHRRlPALLHGLFLALLVLNLVAGFQVLGTLMAVG 209
                 ******998.***************************************************999887625789************************** PP

       ABC-3 195 lliiPaatArrltrslesllivAillglvsvvaGlllSyyldlatGavivlvatllfllallv 257
                 ++++Pa++Ar ++r+l  +l++A+ +g++ + +Gl lS  ++l++G+ ivl a++lf+++l++
  CTQ29493.1 210 VMMLPAVAARCWARTLPGILLLAAGMGALCAWLGLSLSWAISLPAGPAIVLTASALFFVSLFF 272
                 ************************************************************987 PP

>> FeoB_C  Ferrous iron transport protein B C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.21   1.9e+03      11      28 ..      31      48 ..      20      56 .. 0.57
   2 ?   -3.1   0.0      0.73   6.6e+03      10      21 ..      54      65 ..      48      69 .. 0.71
   3 ?   15.0   0.1   1.6e-06     0.014       5      29 ..      76     100 ..      72     106 .. 0.85
   4 ?   -2.7   0.6      0.56     5e+03       6      13 ..     201     208 ..     184     213 .. 0.62
   5 ?   -2.3   0.6      0.42   3.8e+03       3      18 ..     227     242 ..     225     245 .. 0.82
   6 ?   -3.7   0.2       1.1     1e+04      12      18 ..     265     271 ..     258     279 .. 0.46

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.21
      FeoB_C 11 vallvalllkktt.lkgep 28
                 +l v lll++   l g++
  CTQ29493.1 31 TMLGVFLLLRR-MsLMGDA 48
                34455556677.5566665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.73
      FeoB_C 10 lvallvalllkk 21
                l  ++v++ll+ 
  CTQ29493.1 54 LPGVAVGYLLSG 65
                456778888865 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 1.6e-06
      FeoB_C   5 Yllgilvallvalllkktt.lkgeps 29 
                 ++ gi+val+++++ ++ t lk ++s
  CTQ29493.1  76 FIAGIVVALVAGWVSRR-TpLKEDAS 100
                 689**************.99**9884 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 0.56
      FeoB_C   6 llgilval 13 
                 +lg l+a+
  CTQ29493.1 201 VLGTLMAV 208
                 55666665 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 0.42
      FeoB_C   3 slYllgilvallvall 18 
                 ++ ll   +  l+a+l
  CTQ29493.1 227 GILLLAAGMGALCAWL 242
                 6788899999999997 PP

  == domain 6  score: -3.7 bits;  conditional E-value: 1.1
      FeoB_C  12 allvall 18 
                  ++v+l+
  CTQ29493.1 265 LFFVSLF 271
                 2333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2102.34
//
Query:       CTQ29494.1  [L=225]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-23   83.2   0.0    3.6e-23   82.6   0.0    1.2  1  ABC_tran         ABC transporter
    7.5e-09   35.3   0.0     0.0012   18.3   0.0    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
    1.2e-07   31.9   0.1    0.00028   20.8   0.0    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0012   19.0   0.2     0.0066   16.7   0.2    2.0  1  SbcCD_C          Putative exonuclease SbcCD, C subunit
      0.002   18.7   0.1     0.0029   18.1   0.1    1.2  1  AAA_23           AAA domain
     0.0042   16.9   0.1     0.0064   16.3   0.1    1.2  1  AAA_15           AAA ATPase domain
      0.005   15.7   0.2     0.0078   15.1   0.2    1.2  1  ABC_ATPase       Predicted ATPase of the ABC class
     0.0085   16.4   0.2      0.038   14.2   0.0    1.9  2  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.016   15.0   0.2      0.031   14.0   0.2    1.5  1  AAA_29           P-loop containing region of AAA domain
       0.02   14.5   0.3      0.054   13.1   0.1    1.7  2  AAA_25           AAA domain
       0.04   14.1   0.3       0.11   12.7   0.1    1.7  2  AAA_33           AAA domain
       0.06   13.4   0.1       0.13   12.4   0.0    1.6  2  MMR_HSR1         50S ribosome-binding GTPase
      0.083   12.8   0.1       0.16   11.9   0.1    1.4  1  RsgA_GTPase      RsgA GTPase
      0.084   13.3   0.7       0.14   12.5   0.6    1.7  1  AAA_16           AAA ATPase domain
        0.1   12.5   0.1       0.21   11.4   0.1    1.5  1  HlyD_D4          Long alpha hairpin domain of cation efflux s
       0.14   12.2   0.1       0.49   10.4   0.0    1.8  2  AAA_14           AAA domain
       0.15   12.0   1.0       0.26   11.2   0.4    1.6  2  NACHT            NACHT domain
       0.19   11.4   0.0       0.27   10.9   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.21   11.5   0.3         12    5.8   0.0    2.1  2  NTPase_1         NTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   3.9e-26   3.6e-23       7     136 ..      23     157 ..      19     158 .. 0.85

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 3.9e-26
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS...--S-TTSBHHHH...HHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx...xxxxxxxxxxxx...xxxxxxxxxxxxxxxxx RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe...pqlfpeltvren...esdeeiekalsklglke 96 
                  + +g+++aivG nG+GKStLlk+lag l p +G+++++gk        +++ l++++    q+   +  +p++++ +      +++i ++l+++gl +
  CTQ29494.1  23 MICPGSLTAIVGLNGCGKSTLLKTLAGFLPPVSGRLRWQGKRPVIgwlAQRHALESQFPLNVQDvvsQGAWPGVSLLRGlggGTRRRIGAVLERVGLAG 121
                 5779********************************99966555547777777777777777775544555555544448*9999************** PP

                 TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  97 lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 l++t++    + LSgGq qr+  ar+++++++l++lDEp+
  CTQ29494.1 122 LAKTPI----EALSGGQFQRMLFARVMVQQAPLVMLDEPF 157
                 ******....*****************************7 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-05      0.01      25      45 ..      28      48 ..      22      85 .. 0.82
   2 !   18.3   0.0   1.3e-06    0.0012     135     200 ..     128     189 ..     105     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
                SEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAil 45
                s+taivG NG+GKs ll  + 
  CTQ29494.1 28 SLTAIVGLNGCGKSTLLKTLA 48
                689*************99886 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1.3e-06
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislree 200
                 e+LSgG+ +     +lfA  +v++apl++lDe    +De+  +++ +l+ e + + Q i   l+++
  CTQ29494.1 128 EALSGGQFQ----RMLFARVMVQQAPLVMLDEPFTGIDEATSRELMDLILEMHRQGQTILAVLHDN 189
                 578999865....89******************************************998877665 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     3e-07   0.00028       1      22 [.      29      50 ..      29      79 .. 0.86
   2 !    9.3   0.0   0.00095       0.9     257     294 ..     147     183 ..     116     187 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                l++++G Ng+GKS+LL++l ++
  CTQ29494.1 29 LTAIVGLNGCGKSTLLKTLAGF 50
                79*****************887 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00095
      AAA_21 257 kgsllliDEpEngLHPkllrrllellkelsrngaQvil 294
                  ++l+ +DEp +g++ +  r+l++l+ e +r  +Q il
  CTQ29494.1 147 QAPLVMLDEPFTGIDEATSRELMDLILEMHR-QGQTIL 183
                 239***********************77777.688776 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2     7e-06    0.0066      65      88 ..     149     172 ..     113     174 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7e-06
     SbcCD_C  65 rlvfLDEAFsklDeesiatllell 88 
                  lv+LDE F ++De ++++l++l+
  CTQ29494.1 149 PLVMLDEPFTGIDEATSRELMDLI 172
                 59*******************986 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   3.1e-06    0.0029      21      39 ..      29      47 ..      11      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.1e-06
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                lt+I+G NG+GK+T+l  +
  CTQ29494.1 29 LTAIVGLNGCGKSTLLKTL 47
                9**************9766 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   6.8e-06    0.0064      25      47 ..      29      51 ..      20      55 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.8e-06
      AAA_15 25 ltvliGkNnsGKSsilealdlFl 47
                lt ++G N++GKS++l+ l  Fl
  CTQ29494.1 29 LTAIVGLNGCGKSTLLKTLAGFL 51
                9****************998776 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   8.3e-06    0.0078     237     265 ..      20      48 ..      14      52 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.3e-06
                 EEEEEE-SSEEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 237 vsGmgipkGvtlIvGggfhGKsTLLeAle 265
                 +sGm  p  +t+IvG +  GKsTLL+ l+
  CTQ29494.1  20 LSGMICPGSLTAIVGLNGCGKSTLLKTLA 48 
                 79************************985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.1e-05     0.038       6      30 ..      28      52 ..      26      81 .. 0.88
   2 ?   -0.2   0.0       1.2   1.1e+03      71      96 ..     161     185 ..     103     203 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlleqld 30
                ++++++G  G+GK+tll++l+  l+
  CTQ29494.1 28 SLTAIVGLNGCGKSTLLKTLAGFLP 52
                6799****************98776 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.2
      AAA_22  71 erlsseellealeqalraravielli 96 
                  +++s+el++++ +  r+ ++  l +
  CTQ29494.1 161 DEATSRELMDLILEMHRQGQT-ILAV 185
                 455666666666665555555.4444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   3.3e-05     0.031      23      43 ..      28      48 ..      20      59 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.3e-05
      AAA_29 23 gatlltGpsGsGKSTllDAiq 43
                + t ++G +G GKSTll  ++
  CTQ29494.1 28 SLTAIVGLNGCGKSTLLKTLA 48
                3799************96665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   5.8e-05     0.054      27      54 ..      21      48 ..      12      68 .. 0.87
   2 ?   -1.4   0.0       1.5   1.4e+03     117     120 ..     151     154 ..     103     192 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.8e-05
      AAA_25 27 kgllpagelallaGapgtGKttlaldla 54
                 g++  g+l++++G  g+GK+tl+  la
  CTQ29494.1 21 SGMICPGSLTAIVGLNGCGKSTLLKTLA 48
                588999*****************98887 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.5
      AAA_25 117 fakd 120
                 +++d
  CTQ29494.1 151 VMLD 154
                 3333 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00011      0.11       2      21 ..      30      49 ..      29      58 .. 0.85
   2 ?   -2.0   0.0       3.8   3.6e+03      67      82 ..     145     160 ..     133     190 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
      AAA_33  2 vllvGlpGsGKstlaerllk 21
                + +vGl+G+GKstl++ l+ 
  CTQ29494.1 30 TAIVGLNGCGKSTLLKTLAG 49
                568*************9985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.8
      AAA_33  67 lsagrnvildatnlsr 82 
                  +++  v+ld +++  
  CTQ29494.1 145 VQQAPLVMLDEPFTGI 160
                 3444446666666553 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014      0.13       3      21 ..      31      49 ..      29      67 .. 0.87
   2 ?   -2.8   0.0       6.8   6.4e+03      63      63 ..     166     166 ..     136     194 .. 0.48

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
                EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  3 aivGrpNvGKStLinaltg 21
                aivG    GKStL+++l g
  CTQ29494.1 31 AIVGLNGCGKSTLLKTLAG 49
                8***************987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.8
                 H CS
    MMR_HSR1  63 e 63 
                 +
  CTQ29494.1 166 R 166
                 1 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00017      0.16      99     121 ..      27      49 ..      19      61 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
                  TSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallp 121
                  ++++++vG  G GKStL+++l++
   CTQ29494.1  27 GSLTAIVGLNGCGKSTLLKTLAG 49 
                  67899**************9986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.6   0.00015      0.14      25      46 ..      28      49 ..       6     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00015
      AAA_16 25 elvllsGesGvGKsslvrellr 46
                +l+ ++G  G+GKs+l+++l+ 
  CTQ29494.1 28 SLTAIVGLNGCGKSTLLKTLAG 49
                7899**************9984 PP

>> HlyD_D4  Long alpha hairpin domain of cation efflux system protein, CusB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00023      0.21      19      50 ..      99     131 ..      97     135 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00023
                 HHHT.T--HHHHHHHHHHHHHCT--HHHHHHHH CS
     HlyD_D4  19 lkel.gdlaslldaareRlrLaGMpdadIrrle 50 
                 l+ l g+++  ++a++eR+ LaG+    I++l 
  CTQ29494.1  99 LRGLgGGTRRRIGAVLERVGLAGLAKTPIEALS 131
                 56665788999******************9985 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00052      0.49       5      23 ..      30      48 ..      27      55 .. 0.88
   2 ?   -1.2   0.0         2   1.9e+03      47      75 ..     163     191 ..     134     198 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00052
      AAA_14  5 lvitGaRrvGKTtllkqli 23
                 +i+G+  +GK+tllk+l+
  CTQ29494.1 30 TAIVGLNGCGKSTLLKTLA 48
                689*************997 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2
      AAA_14  47 adpekllelileklkeekktylflDEiqe 75 
                 a++++l++lile+ ++ ++ + +l   q+
  CTQ29494.1 163 ATSRELMDLILEMHRQGQTILAVLHDNQR 191
                 22335666666653333444455555555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   0.00028      0.26       2      21 ..      29      48 ..      28      51 .. 0.90
   2 ?   -2.2   0.0       3.6   3.4e+03     106     128 ..     165     187 ..     139     206 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                l ++ G +G+GK+tLl+ la
  CTQ29494.1 29 LTAIVGLNGCGKSTLLKTLA 48
                5789*************997 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.6
                 ...HHHHHCTTTTT--EEEEEEE CS
       NACHT 106 rtlLselirkkllpeasllltvr 128
                  + L +li + + ++ ++l+ ++
  CTQ29494.1 165 SRELMDLILEMHRQGQTILAVLH 187
                 33344666665555555555555 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00029      0.27       3      21 ..      32      50 ..      30      76 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
  Viral_helicase1  3 vhGvpGcGKStlirkllrt 21
                     + G  GcGKStl+++l+  
       CTQ29494.1 32 IVGLNGCGKSTLLKTLAGF 50
                     66888**********9976 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.057        54       4      22 ..      32      50 ..      30      57 .. 0.84
   2 ?    5.8   0.0     0.012        12      93     136 ..     145     190 ..     130     201 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.057
                EE--TTSSHHHHHHHHHHH CS
    NTPase_1  4 iTGppGvGKtTlvkkvlel 22
                i G  G GK+Tl+k ++  
  CTQ29494.1 32 IVGLNGCGKSTLLKTLAGF 50
                77999********988765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.012
                 HHHH-EEEE--..-STTGGG-HHHHHHHHHHHTTTSEEEEE--SS- CS
    NTPase_1  93 lseadviviDE..iGkmElkskkfkeaveevLksekpvlavihrrk 136
                 +++a ++++DE   G  E +s+++ + + e+ ++++ +lav+h ++
  CTQ29494.1 145 VQQAPLVMLDEpfTGIDEATSRELMDLILEMHRQGQTILAVLHDNQ 190
                 47788999999777999**************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1608.23
//
Query:       CTQ29495.1  [L=359]
Description: membrane-bound lytic murein transglycosylase B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-91  305.4   0.0    4.3e-91  305.2   0.0    1.0  1  SLT_2            Transglycosylase SLT domain
     0.0088   15.7   0.0       0.17   11.6   0.0    2.2  2  SLT              Transglycosylase SLT domain
  ------ inclusion threshold ------
      0.043   14.3   0.0       0.11   13.1   0.0    1.7  1  Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylgluc


Domain annotation for each model (and alignments):
>> SLT_2  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.2   0.0   7.2e-95   4.3e-91       3     290 ..      56     349 ..      54     350 .. 0.92

  Alignments for each domain:
  == domain 1  score: 305.2 bits;  conditional E-value: 7.2e-95
       SLT_2   3 eawlael.keeaaaegiseetleaalagvepkprvieldkkqa.......efkktleeYlkrfvtekriakGraflkehaallariekeyGVpaeiivA 93 
                 ++++a++ ++++a++g+++++l+++l++++  + v++l+ +qa         +  + +Y k+f+t++++++G+ f+++++++l+r+ + yGVp+eiiv+
  CTQ29495.1  56 NPAAAQFiDKMVAKHGFDRQQLQEILSQAKRLDYVLRLMDRQAptglpptGPTGAWLRYKKQFITPDNVQNGVVFWNQYQDALNRAYQVYGVPPEIIVG 154
                 56788999*******************************9988555544445557******************************************** PP

       SLT_2  94 iwgvEtryGkntgkfrvldalatlafdg.rRseffrkeliaalklldegdvdpeelkGSwaGamGltQFmPssylkyAvDfdgdgrrDlwnspaDalaS 191
                 i+gvEtr+G+++gk+r+ldalatl+f++ rR+e+f++el+ +l ++++++ dp +lkGS+aGamG+ QFmPssy +yAvDf+gdg+++lw+ p Da++S
  CTQ29495.1 155 IIGVETRWGRVMGKTRILDALATLSFSYpRRAEYFSSELETFLLMARSESDDPLDLKGSFAGAMGYGQFMPSSYKQYAVDFNGDGHINLWD-PVDAIGS 252
                 **************************776*************************************************************9.******* PP

       SLT_2 192 vAnyLkkhgWqagepwgvevklp.aefdellagkkkplaewaalgvkraegkapaaekaeaslllpagekgpa.flvlknfkvitrYNrStlYalaVae 288
                 vAny+k+hgW +g+ ++v++  +  +++   + +k +++++aa+g+++++   p  ++++asll  +  +g + + +l+nf++itrYN+St Ya+aV++
  CTQ29495.1 253 VANYFKQHGWVSGDLVAVQALGQaPGLENGFK-TKYSVSQLAAAGLTPTQ---PLGNHQQASLLRLDVGTGYEyWYGLPNFYTITRYNHSTHYAMAVWQ 347
                 *************9999988777555555555.47777***********9...565578889999999999888************************9 PP

       SLT_2 289 la 290
                 l+
  CTQ29495.1 348 LG 349
                 96 PP

>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.037   2.2e+02       4      27 ..     139     162 ..     136     166 .. 0.87
   2 !   11.6   0.0   2.8e-05      0.17       9      78 ..     188     259 ..     181     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.037
                 HHHHHHHTS-HHHHHHHHHHHHTT CS
         SLT   4 ikaekkygvepsllaaiaqvESgf 27 
                 + a + ygv+p++++ i+ vE ++
  CTQ29495.1 139 NRAYQVYGVPPEIIVGIIGVETRW 162
                 567789***************987 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.8e-05
                 HHTS-HHHHHHHHHHHHTT-TT-B-.TTSEBTTTTBETTTHHHHHHHHT.-SHHHHCSHHHHHHHHHHHHHH CS
         SLT   9 kygvepsllaaiaqvESgfnpkAvs.ksgavGLmQimpstakrlglrvk.lsedelldPeknisagakyLks 78 
                  +++e ++++  a+ ES    + +   +ga+G  Q+mps  k+++  ++ ++  +l dP+++i   a+y+k+
  CTQ29495.1 188 YFSSELETFLLMARSESDDPLDLKGsFAGAMGYGQFMPSSYKQYAVDFNgDGHINLWDPVDAIGSVANYFKQ 259
                 56777888888888998854444444789******************999*************999999987 PP

>> Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.8e-05      0.11       3      30 ..     137     164 ..     135     182 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
                      HHHHHHHHCT.-HHHHHHHHHHHHTTTT CS
  Glucosaminidase   3 aaleaakkygippsvalaqaalEsgwgt 30 
                      a+++a + yg+pp+++++   +E+ wg+
       CTQ29495.1 137 ALNRAYQVYGVPPEIIVGIIGVETRWGR 164
                      67889999*******************4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2507.11
//
Query:       CTQ29496.1  [L=187]
Description: glucitol/sorbitol-specific enzyme IIC component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-76  254.7   0.5    4.3e-76  254.5   0.5    1.0  1  EII-GUT   PTS system enzyme II sorbitol-specific factor


Domain annotation for each model (and alignments):
>> EII-GUT  PTS system enzyme II sorbitol-specific factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.5   0.5   2.4e-80   4.3e-76       2     166 ..       6     170 ..       5     171 .. 0.98

  Alignments for each domain:
  == domain 1  score: 254.5 bits;  conditional E-value: 2.4e-80
     EII-GUT   2 vklaegfiglfqaggetfvglvtgivPllivllvalnalikliGeerveklakklaknvllrYlllpvlavffltnPmaytlgrflpEkyKpayydaav 100
                 ++ ae+figlfq+gge+f g+vtgi+Plli llv++nali++iG++r+ekla+ +a n ++rYlllp++++f+++nPm+++lgrf+pEkyKp+yy+aa+
  CTQ29496.1   6 THGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNALINFIGQQRIEKLAQRCAGNPISRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPSYYAAAS 104
                 5789*********************************************************************************************** PP

     EII-GUT 101 sfvhpvtglFPhanpgElfvylGiaagitklglslaelavryllvglvvillrglvtelitailak 166
                 +++h+++glFPh+npgElfvylGia+g+t+lgl+l+ lav+yllvglv++++rg+vt+l+t+i+++
  CTQ29496.1 105 YSCHSMNGLFPHINPGELFVYLGIANGLTTLGLPLGPLAVSYLLVGLVTNFFRGWVTDLTTSIFER 170
                 *************************************************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1468.57
//
Query:       CTQ29497.1  [L=326]
Description: glucitol/sorbitol-specific enzyme IIB component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-70  236.9   0.2    1.6e-70  236.6   0.2    1.1  1  EIIBC-GUT_N  Sorbitol phosphotransferase enzyme II N-terminus
    6.6e-43  144.8   4.0    6.6e-43  144.8   4.0    2.2  2  EIIBC-GUT_C  Sorbitol phosphotransferase enzyme II C-terminus
      0.002   18.4   2.7      0.002   18.4   2.7    1.6  2  Gate         Nucleoside recognition


Domain annotation for each model (and alignments):
>> EIIBC-GUT_N  Sorbitol phosphotransferase enzyme II N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.6   0.2   2.7e-74   1.6e-70       2     184 .]       4     178 ..       3     178 .. 0.92

  Alignments for each domain:
  == domain 1  score: 236.6 bits;  conditional E-value: 2.7e-74
  EIIBC-GUT_N   2 ikiekGsgGwGgpLtitpteekkkvvsvtggeipevvekiaeltGaeavdgFktsvp.eeeiavvvidCGGtlRcGvYPkkripTinvlptgksGPLa 98 
                  i+iekG+gGwGgpL++ +  e kk+v++t+g++p++v++ia ltG++ vdgFk+  p e++i v++idCGGtlRcG+YPk+ripT+n+++tgksGPLa
   CTQ29497.1   4 IRIEKGTGGWGGPLEL-DAVEGKKIVYITAGTRPAIVDRIASLTGWQPVDGFKEGEPaESDIGVAIIDCGGTLRCGLYPKRRIPTVNIHATGKSGPLA 100
                  89**************.7778899*******************************997889************************************* PP

  EIIBC-GUT_N  99 kyitediyvSgvkeeqieladeeeeeeeeeeeekeeaeekekkketkkkiteqeekekkkgliakigigvGkvvavfyqagrdaid 184
                  +yitediyvSgvke++i+++  +++  +e  +e   ++++ ++++t+kkiteq++     gl+ak+g+g+G+vvav++qagrd+id
   CTQ29497.1 101 QYITEDIYVSGVKEDNIQCIAPDSAGVSEPPAE---NKSAGRDYDTSKKITEQSD-----GLLAKVGMGMGSVVAVLFQAGRDTID 178
                  ********************5544444444433...4456789**********99.....9************************8 PP

>> EIIBC-GUT_C  Sorbitol phosphotransferase enzyme II C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.15     9e+02      55      85 ..     169     200 ..     153     213 .. 0.61
   2 !  144.8   4.0   1.1e-46   6.6e-43       1      93 []     233     325 ..     233     325 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.15
  EIIBC-GUT_C  55 lgeaepetvevGvpavl.lsrlltgpiavlia 85 
                  l +a  +t+++   ++l +  ++ + i +++a
   CTQ29497.1 169 LFQAGRDTIDTVLKTILpFMAFVSALIGIIMA 200
                  55566666666666665444455555555554 PP

  == domain 2  score: 144.8 bits;  conditional E-value: 1.1e-46
  EIIBC-GUT_C   1 lspllgpGaviaqvvgvliGteigkgaipvalalPalfainaqvgcdfvPvglslgeaepetvevGvpavllsrlltgpiavliaylvslgly 93 
                  lsp+lgpGaviaqv+gvliG++ig g+ip++lalPalfainaq++cdf+Pvglsl+ea+++tv vGvp+vl+sr+ltg+ +vlia++vs  +y
   CTQ29497.1 233 LSPFLGPGAVIAQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACDFIPVGLSLAEARQDTVRVGVPSVLVSRFLTGAPTVLIAWFVSGFIY 325
                  8***************************************************************************************98876 PP

>> Gate  Nucleoside recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.6   9.4e+03      20      38 ..     151     169 ..     146     174 .. 0.75
   2 !   18.4   2.7   3.4e-07     0.002       1      64 [.     181     246 ..     181     292 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
        Gate  20 sssllgrigkllepvfapl 38 
                 s++ll+++g  ++ v+a l
  CTQ29497.1 151 SDGLLAKVGMGMGSVVAVL 169
                 4788888888888887765 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3.4e-07
        Gate   1 llkagpiillasiliwflssssllgrigkllepv.faplg.qeldwkatvslltgfaakevvvgtl 64 
                 l++++p+++++s+li+++ +s++ ++i+  l+p+  +plg   l   ++ +ll+ f+  ++v++ +
  CTQ29497.1 181 LKTILPFMAFVSALIGIIMASGIGDWIAHGLAPLaSHPLGlVTLALICSFPLLSPFLGPGAVIAQV 246
                 6889******************************6666*******************888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2673.15
//
Query:       CTQ29498.1  [L=120]
Description: glucitol/sorbitol-specific enzyme IIA component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-40  136.9   0.0    2.7e-40  136.8   0.0    1.0  1  PTSIIA_gutA  PTS system glucitol/sorbitol-specific IIA compon
  ------ inclusion threshold ------
      0.025   14.7   0.0      0.088   13.0   0.0    1.8  2  SfsA_N       SfsA N-terminal OB domain


Domain annotation for each model (and alignments):
>> PTSIIA_gutA  PTS system glucitol/sorbitol-specific IIA component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   0.0     3e-44   2.7e-40       1     110 [.       4     113 ..       4     116 .. 0.95

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 3e-44
                  EEEEEEEEE-TTT--TTS.-EEEEE-TTS-HHHHTTCEEEE-T.GG----TT-EEEETTEEEEEEEE-TTHHHHHHHHS-EEEE-S---SGG-TTEEE CS
  PTSIIA_gutA   1 iyqttvteiGeeaeefleekmlIlFgeeapdeLadysviheveelkeeikkgdtltigeqeykitaVGevanknLkelGHvtlkFdgakeaelpgaiy 98 
                  iyqtt+t+iG++a+ +lee+mlI+F+e+ap+++++y++ih+++el++++++g++l++geq+y++taVGeva++nL+elGH+tl+Fdg++eae+pg+++
   CTQ29498.1   4 IYQTTITHIGACATMALEEQMLITFREGAPADIEEYCFIHNHGELAGTLQPGAELQLGEQRYPVTAVGEVAEQNLRELGHITLRFDGHREAEFPGTVH 101
                  7************************************************************************************************* PP

                  EES-S-----TT CS
  PTSIIA_gutA  99 legkelpelkvg 110
                  + g    +++ g
   CTQ29498.1 102 VAGPVPDAIAPG 113
                  **9754477766 PP

>> SfsA_N  SfsA N-terminal OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.8e-06     0.088      10      39 ..      35      62 ..      24      70 .. 0.81
   2 ?   -1.1   0.0      0.24   2.2e+03      11      20 ..      94     103 ..      87     114 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.8e-06
                EEEEE..EE----S--TTT--TT-EEEEE. CS
      SfsA_N 10 dveldgtvHvpntGrlkelllpGarvllsk 39
                d+e    ++++n G l + l+pGa++ l +
  CTQ29498.1 35 DIEE--YCFIHNHGELAGTLQPGAELQLGE 62
                3333..3******************99875 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.24
                 EEEE..EE-- CS
      SfsA_N  11 veldgtvHvp 20 
                 +e++gtvHv+
  CTQ29498.1  94 AEFPGTVHVA 103
                 5677899997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 930.29
//
Query:       CTQ29499.1  [L=259]
Description: sorbitol-6-phosphate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-48  164.0   0.1    3.2e-48  163.8   0.1    1.1  1  adh_short      short chain dehydrogenase
    1.1e-40  139.6   0.0    2.1e-40  138.8   0.0    1.3  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
     0.0004   20.3   0.5    0.00069   19.6   0.5    1.4  1  KR             KR domain
     0.0028   17.1   0.0       0.14   11.5   0.1    2.1  2  Epimerase      NAD dependent epimerase/dehydratase family
     0.0059   16.5   0.3     0.0097   15.8   0.3    1.4  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
  ------ inclusion threshold ------
      0.032   14.5   0.2      0.054   13.7   0.2    1.4  1  TrkA_N         TrkA-N domain
      0.041   13.7   0.0       0.68    9.7   0.0    2.1  2  PocR           Sensory domain found in PocR
      0.046   14.3   0.1       0.25   11.9   0.2    2.0  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.8   0.1   1.4e-51   3.2e-48       1     191 [.       3     197 ..       3     201 .. 0.97

  Alignments for each domain:
  == domain 1  score: 163.8 bits;  conditional E-value: 1.4e-51
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsels 97 
                 +v++v+G+++ +G  +++ la+eG++v+vvd+++ek+ +va+e+++e  +  a+ + +D t++++v al   + + + ++d+Lv  AGi++ + +s++ 
  CTQ29499.1   3 QVAVVIGGGQTLGEFLCRGLAAEGYRVAVVDIQSEKASRVAQEINAEygEGMAYGFGADATSEASVTALAHGVDEIFSRVDLLVYSAGIAKAAFISDFA 101
                 69*********************************************99999*********************************************** PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS.SHHHHHHC CS
   adh_short  98 eeewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd.Tdmakelr 191
                   +++r+++vNl+g+fl++r++ + m+ ++ +GrI+++ S  gkv++++ + YsA+K++ +glt+sla +la++gi+v++++ G +  ++m ++l 
  CTQ29499.1 102 LGDFDRSLQVNLVGYFLCAREFSRLMIrDGIKGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLkSPMFQSLL 197
                 ***************************99*******************************************************987799998775 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.8   0.0   9.2e-44   2.1e-40       6     232 ..      14     255 ..       9     256 .. 0.90

  Alignments for each domain:
  == domain 1  score: 138.8 bits;  conditional E-value: 9.2e-44
                   HHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHH CS
  adh_short_C2   6 IGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdra 98 
                   +G+ + + la+eG++v+++d++ e+  + ++e+ +e+g+  +  + +D+t+e++v+al+  v e f ++D lv +agia++  + + ++   +fdr 
    CTQ29499.1  14 LGEFLCRGLAAEGYRVAVVDIQSEKaSRVAQEINAEYGEGmAygFGADATSEASVTALAHGVDEIFSRVDLLVYSAGIAKA--AFISDFALGDFDRS 108
                   67778899*****************888889999****885379*************************************..9999********** PP

                   HHHHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE-.-BHCTGGGGS.TT...... CS
  adh_short_C2  99 ldvnlyslfllakaalp.lmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspg.pikTlaasgi.kg...... 184
                   l+vnl ++fl+a+++ + ++++g  g+i+ + s +++++ ++++ y+aaK + ++lt++lA +l+++gi+v++   g ++k ++ +++ ++      
    CTQ29499.1 109 LQVNLVGYFLCAREFSRlMIRDGikGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGnLLKSPMFQSLlPQyatklg 205
                   *****************555666***************************************************98745677775543132333455 PP

                   ..HHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 185 ..fdelleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                     ++e++++  ++ pl+r  + ++v ++ +f as++asy+tGq + v gG
    CTQ29499.1 206 idESEVEQYYIDKVPLKRGCEYQDVLNVLMFYASPQASYCTGQSINVTGG 255
                   557789*******************************************9 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.5   3.1e-07   0.00069       4     152 ..       6     157 ..       4     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.1e-07
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 +++GG   LG  l+r la++g r  v+   s ++ ++ +++i++    g+    + aD +++++v+al + +++ ++++   + +Ag+++ + +++   
  CTQ29499.1   6 VVIGGGQTLGEFLCRGLAAEGYRVAVVDIQS-EKASRVAQEINAEYGEGMAY-GFGADATSEASVTALAHGVDEIFSRVDLLVYSAGIAKAAFISDFAL 102
                 79*******************9888877777.34444444555444444443.4678****************************************** PP

                 HHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--TT-HHHHHH CS
          KR 103 edleqvlapKvkGawnLhelled.....esldffvlfSSiagllgsagqanYaaa 152
                  d+++ l+  + G     + +++          ++ + S +g +gs++ + Y+aa
  CTQ29499.1 103 GDFDRSLQVNLVGYFLCAREFSRlmirdGIKGRIIQINSKSGKVGSKHNSGYSAA 157
                 ********99999877666555533332344567888888888888888888887 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   6.4e-05      0.14       2      69 ..       6      79 ..       5     112 .. 0.76
   2 ?    3.8   0.0     0.015        34     133     172 ..     143     187 ..     131     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.4e-05
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.........EEEE--TT-HHHHHHHHHHHT-SEEE CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl.........elveldltdrsalerlfkeeqpdavi 69
                +V+G+   +G  l++ l+++gy+v ++d +s++  + ++e +             +d t ++++++l +  ++d+++
  CTQ29499.1  6 VVIGGGQTLGEFLCRGLAAEGYRVAVVDIQSEKASRVAQE-InaeygegmaYGFGADATSEASVTALAH--GVDEIF 79
                799**99**********************96665544433.3477787777555666666666655544..555554 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.015
                 TS--..--SSHHHHHHHHHHHHHHHHH...HHHT-EEEEEEESEE CS
   Epimerase 133 tgpl..kpnspYaaaKlageklveaya...aqyglnaiilrlfnl 172
                 +g++  k ns Y+aaK  g  l++++a   a+yg+ + +l+l nl
  CTQ29499.1 143 SGKVgsKHNSGYSAAKFGGVGLTQSLAldlAEYGITVHSLMLGNL 187
                 45566689***************9998444689999999999997 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   4.3e-06    0.0097       3      53 ..       6      57 ..       3      87 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.3e-06
                EEE--S.CCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTT CS
     3HCDH_N  3 aviGaG.tmGagiaavfasagleVvlvdiseealekalekieksleklvekg 53
                 viG G t+G+ +   +a++g++V +vdi++e++ +++++i++++ + ++ g
  CTQ29499.1  6 VVIGGGqTLGEFLCRGLAAEGYRVAVVDIQSEKASRVAQEINAEYGEGMAYG 57
                47899868*********************************99877665555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   2.4e-05     0.054       1      41 [.       6      46 ..       5      78 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.4e-05
                EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTT CS
      TrkA_N  1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeg 41
                ++i G  ++G+ l++ L + g+ +v v+d + e++ ++++e 
  CTQ29499.1  6 VVIGGGQTLGEFLCRGLAAeGY-RVAVVDIQSEKASRVAQEI 46
                455556678**********777.6**********99997654 PP

>> PocR  Sensory domain found in PocR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.076   1.7e+02      86     126 ..       4      51 ..       1      79 [. 0.79
   2 ?    9.7   0.0    0.0003      0.68      93     151 ..     176     235 ..     149     241 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.076
        PocR  86 avPIivegkllGaiilGqvllee.......pdeeefreqakelgldee 126
                 ++ +i +g++lG +++     e        +++e+++++a+e++++  
  CTQ29499.1   4 VAVVIGGGQTLGEFLCRGLAAEGyrvavvdIQSEKASRVAQEINAEYG 51 
                 67788999*******999999998988866669999999999886655 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0003
        PocR  93 gkllGaiilGqvlleepdeeefreqakelgldeeelleal.ekvpvvseeklraiaelle 151
                 g ++ +++lG+ l +++ ++ ++++a++lg+de+e+++++ +kvp     + + ++++l+
  CTQ29499.1 176 GITVHSLMLGNLLKSPMFQSLLPQYATKLGIDESEVEQYYiDKVPLKRGCEYQDVLNVLM 235
                 6677899*********99******************998636788877777777777765 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00011      0.25       4      48 ..       7      52 ..       3      89 .. 0.71
   2 ?   -0.4   0.0      0.79   1.8e+03      11      34 ..     165     188 ..     159     212 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                   EETTSH.HHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC....- CS
  F420_oxidored  4 iiGaGn.mgealasgllaagaqpheivvansrnpekaeelaeelg....v 48
                   +iG+G+ +ge l +gl+a+g   + + v+ + + eka   a+e++     
     CTQ29499.1  7 VIGGGQtLGEFLCRGLAAEG---YRVAVV-DIQSEKASRVAQEINaeygE 52
                   67999747************...888877.88888888888887744442 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.79
                    HHHHHHHHHHTTS-GGCEEEEEES CS
  F420_oxidored  11 gealasgllaagaqpheivvansr 34 
                     ++la+ l++ g + h+++++n  
     CTQ29499.1 165 TQSLALDLAEYGITVHSLMLGNLL 188
                    589999999999999999988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1958.23
//
Query:       CTQ29500.1  [L=119]
Description: DNA-binding transcriptional activator of glucitol operon [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-35  119.8   0.0    5.6e-35  119.7   0.0    1.0  1  GutM      Glucitol operon activator protein (GutM)


Domain annotation for each model (and alignments):
>> GutM  Glucitol operon activator protein (GutM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   3.1e-39   5.6e-35       2     107 .]       5     110 ..       4     110 .. 0.99

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 3.1e-39
        GutM   2 lililliawllqillglfQiknfnkalkelrkkgkvaiGrkkgrfragvivllavdedgiivearvmkGvTvfarfkeleelegksleeieeeklkkkd 100
                 li++++iawl q ++g +Qi++fn+a+++l+++g+v++Gr+ grf++++iv++avd++++i ++  mkG+T+fa ++++++l gk+++e++++ ++++d
  CTQ29500.1   5 LIIVAAIAWLTQLAFGGWQIRRFNRAFDSLCQQGRVGVGRSAGRFQPRAIVAIAVDDNDRISDTLLMKGFTIFASPQKIPALAGKHIAELQPDVIFPHD 103
                 89************************************************************************************************* PP

        GutM 101 kltqkal 107
                 + +q+al
  CTQ29500.1 104 PRCQNAL 110
                 ****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 998.25
//
Query:       CTQ29501.1  [L=257]
Description: DNA-bindng transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-52  175.9   0.8      8e-52  175.4   0.4    1.5  2  DeoRC           DeoR C terminal sensor domain
    5.3e-21   74.1   0.2    1.2e-20   73.0   0.1    1.7  2  HTH_DeoR        DeoR-like helix-turn-helix domain
    7.5e-09   35.4   0.1    1.7e-08   34.2   0.0    1.6  2  HTH_11          HTH domain
     0.0026   17.6   0.0      0.016   15.1   0.0    2.1  2  HTH_5           Bacterial regulatory protein, arsR family
     0.0037   17.3   0.0     0.0077   16.3   0.0    1.5  1  FeoC            FeoC like transcriptional regulator
     0.0057   16.4   0.1       0.01   15.6   0.1    1.4  1  HTH_IclR        IclR helix-turn-helix domain
     0.0077   16.6   0.0      0.017   15.5   0.0    1.5  1  Rrf2            Transcriptional regulator
      0.008   15.8   0.0      0.018   14.7   0.0    1.6  1  GntR            Bacterial regulatory proteins, gntR family
     0.0099   16.2   0.0      0.027   14.8   0.0    1.7  1  FaeA            FaeA-like protein
  ------ inclusion threshold ------
      0.012   15.4   0.0       0.03   14.2   0.0    1.6  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
      0.012   15.7   0.0      0.024   14.7   0.0    1.4  1  HTH_20          Helix-turn-helix domain
      0.015   15.3   0.0      0.046   13.7   0.0    1.8  2  Put_DNA-bind_N  Putative DNA-binding protein N-terminus
      0.023   14.2   0.0      0.058   13.0   0.0    1.7  1  HTH_24          Winged helix-turn-helix DNA-binding
      0.029   14.3   0.0      0.075   13.0   0.0    1.7  1  Type2_restr_D3  Type-2 restriction enzyme D3 domain
      0.035   14.0   0.1      0.065   13.2   0.1    1.4  1  MarR            MarR family
      0.075   12.3   0.0       0.11   11.7   0.0    1.3  1  UPF0052         Uncharacterised protein family UPF0052
       0.14   11.8   0.0       0.22   11.1   0.0    1.3  1  DDRGK           DDRGK domain


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.4   0.4   7.6e-55     8e-52       2     159 ..      74     231 ..      73     232 .. 0.97
   2 ?   -3.1   0.0       6.3   6.6e+03      57      69 ..     241     253 ..     238     255 .. 0.71

  Alignments for each domain:
  == domain 1  score: 175.4 bits;  conditional E-value: 7.6e-55
       DeoRC   2 naeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLseke.dikvillGGevrkkseslvgplaeealrqfnvdkaflg 99 
                 n+++K++IA+aA+++i+dgd+i+ldaG+T+l+++  L++ +n+tv+Tnsl+++++Lse + + ++++ GG++rkks s++g+lae+a++qf++dk+f+g
  CTQ29501.1  74 NTHKKAQIAEAAVRYIHDGDSIILDAGSTVLQMVPLLSHFNNITVMTNSLHIVNALSEFDnEQTILMPGGTFRKKSASFHGQLAENAFEQFSFDKLFMG 172
                 7899******************************************************8857888999******************************* PP

       DeoRC 100 angidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitD 159
                 ++gid ++g+tt++e  + v +a+++aar+vil+aDssKfg++++  ++ le++d litD
  CTQ29501.1 173 TDGIDLNAGVTTFNE-VYTVSKAMCNAAREVILMADSSKFGRKSPNIVCGLERVDKLITD 231
                 **************9.899****************************************9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.3
       DeoRC  57 LsekedikvillG 69 
                   e+++i+vi++G
  CTQ29501.1 241 ALEAKGIEVIITG 253
                 4566789999998 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.1   1.1e-23   1.2e-20       1      55 [.       6      60 ..       6      62 .. 0.98
   2 ?   -2.7   0.0       4.8   5.1e+03       8      21 ..      72      85 ..      71      88 .. 0.76

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 1.1e-23
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsis 55
                R+++ile l++qgk+sveel+++++++ +TiR+DL +Le++g+++Rt+GG+v+++
  CTQ29501.1  6 RQAAILEFLQSQGKCSVEELAQHFDTTGTTIRKDLVTLENAGTVIRTYGGVVLNK 60
                9***************************************************998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.8
    HTH_DeoR  8 llkqqgklsveelv 21
                l++ + k ++ e++
  CTQ29501.1 72 LINTHKKAQIAEAA 85
                68889999988876 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   1.6e-11   1.7e-08       1      46 [.       6      50 ..       6      56 .. 0.93
   2 ?   -3.1   0.0       7.8   8.2e+03      38      47 ..     241     250 ..     240     254 .. 0.68

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.6e-11
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpI 46
                R+ +ile+L +++g+ s eeLA++++ + +t+r+d+ +Le +g  I
  CTQ29501.1  6 RQAAILEFL-QSQGKCSVEELAQHFDTTGTTIRKDLVTLENAGTVI 50
                8999*****.*********************************666 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7.8
      HTH_11  38 aLeelgvpIe 47 
                 aLe++g++++
  CTQ29501.1 241 ALEAKGIEVI 250
                 7999996654 PP

>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.5e-05     0.016       5      45 ..       8      49 ..       4      51 .. 0.92
   2 ?   -0.5   0.0       1.1   1.2e+03       5      17 ..     123     137 ..     122     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.5e-05
                HHHHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  5 lkILklLae.gelcvcelaeelglsqstvShHLkkLreaGLV 45
                  IL +L++ g+++v ela +++ +  t++  L  L++aG V
  CTQ29501.1  8 AAILEFLQSqGKCSVEELAQHFDTTGTTIRKDLVTLENAGTV 49
                679******9*****************************976 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
                 HHHHHHHTT..SSEE CS
       HTH_5   5 lkILklLae..gelc 17 
                 l I+++L+e  +e++
  CTQ29501.1 123 LHIVNALSEfdNEQT 137
                 579*****9888877 PP

>> FeoC  FeoC like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   7.3e-06    0.0077       6      46 ..      11      51 ..       8      58 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.3e-06
        FeoC  6 keyleergrvslkeLsrhfkaspealeamLeqwvrkGrvek 46
                 e+l+ +g+ s++eL++hf+++ +++++ L +++  G v +
  CTQ29501.1 11 LEFLQSQGKCSVEELAQHFDTTGTTIRKDLVTLENAGTVIR 51
                589************************99999988888865 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   9.9e-06      0.01       4      48 ..       6      49 ..       5      52 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.9e-06
                HHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR  4 RalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyv 48
                R +aiL++l +++   ++ elA++++ + +t +  L tL++ G v
  CTQ29501.1  6 RQAAILEFLQSQGKC-SVEELAQHFDTTGTTIRKDLVTLENAGTV 49
                7799**********6.*************************9976 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.6e-05     0.017      21      71 ..      15      62 ..       7      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-05
                STCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEEESSHC CS
        Rrf2 21 eeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGyrLakpp 71
                ++++++s+ee+a+++++  + ++k l +L++ag v  +    GG++L+k+ 
  CTQ29501.1 15 QSQGKCSVEELAQHFDTTGTTIRKDLVTLENAGTVIRT---YGGVVLNKDE 62
                45566****************************99765...4678888775 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.7e-05     0.018      26      59 ..      21      54 ..      13      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.7e-05
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
        GntR 26 sereLaaefgVsrttvReALrrLeaeglverrqg 59
                s++eLa+ f+++ tt+R+ L +Le +g v+r  g
  CTQ29501.1 21 SVEELAQHFDTTGTTIRKDLVTLENAGTVIRTYG 54
                799**************************99755 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.5e-05     0.027       3      48 ..       8      52 ..       6      55 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.5e-05
                HHHHHHHHH.S----HHHHHHHHTS-HHHHHHHHHHHHHHSSEEEE CS
        FaeA  3 eeIleylnsikapckTreiAdalglsaYQaRyYLeqLekegkikrs 48
                  Ile+l+s ++ c   e+A+++  +   +R  L +Le +g + r+
  CTQ29501.1  8 AAILEFLQS-QGKCSVEELAQHFDTTGTTIRKDLVTLENAGTVIRT 52
                57*******.*******************************99886 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.8e-05      0.03       7      35 ..       9      37 ..       8      40 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.8e-05
  HTH_AsnC-type  7 kILeaLqedaRisyaeLAervGlSestvl 35
                   +ILe Lq +++ s++eLA+    + +t++
     CTQ29501.1  9 AILEFLQSQGKCSVEELAQHFDTTGTTIR 37
                   7*********************9999987 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.3e-05     0.024      12      53 ..       7      48 ..       6      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.3e-05
                HHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTT CS
      HTH_20 12 RrrilraLaraegltaselaerldlskntlsyHLrvLeeagL 53
                +++il  L + +  +++ela+ +d++ +t+++ L +Le ag 
  CTQ29501.1  7 QAAILEFLQSQGKCSVEELAQHFDTTGTTIRKDLVTLENAGT 48
                679***********************************9996 PP

>> Put_DNA-bind_N  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.3e-05     0.046      16      48 ..      10      40 ..       8      40 .. 0.91
   2 ?   -3.2   0.0       8.5     9e+03      19      28 ..     241     250 ..     240     251 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.3e-05
                    HHHHHHHTT--EE-HHHHHHHCTS-HHHHHHHH CS
  Put_DNA-bind_N 16 yLeelkeegveriSSteLaealgvtaaqvRKDL 48
                    +Le l+++g  + S +eLa+  + t +++RKDL
      CTQ29501.1 10 ILEFLQSQG--KCSVEELAQHFDTTGTTIRKDL 40
                    688888888..8999*****************9 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.5
                     HHHHTT--EE CS
  Put_DNA-bind_N  19 elkeegveri 28 
                     +l+++g+e+i
      CTQ29501.1 241 ALEAKGIEVI 250
                     68999*9998 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.5e-05     0.058       7      36 ..       9      38 ..       4      49 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.5e-05
      HTH_24  7 kILelLqknprisqreLAerlglSpstvnr 36
                +ILe Lq ++++s  eLA++ + + +t+++
  CTQ29501.1  9 AILEFLQSQGKCSVEELAQHFDTTGTTIRK 38
                6*******************9999999875 PP

>> Type2_restr_D3  Type-2 restriction enzyme D3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.1e-05     0.075      12      65 ..       4      51 ..       3      55 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.1e-05
  Type2_restr_D3 12 RtRRtiilkylleskkrrsleeikayLklagleEdveTIkDDiqgliniGlnik 65
                    R+R + il++l +s+++ s+ee+ ++ ++ g     +TI+ D+  l+n G  i+
      CTQ29501.1  4 RQRQAAILEFL-QSQGKCSVEELAQHFDTTG-----TTIRKDLVTLENAGTVIR 51
                    89*********.8888**********99987.....8*************8776 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   6.2e-05     0.065       4      50 ..       6      52 ..       4      53 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.2e-05
                HHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE CS
        MarR  4 tqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRs 50
                 q  iL+ l +qg +sv eLa ++ ++ +t+ + l +Le +G + R+
  CTQ29501.1  6 RQAAILEFLQSQGKCSVEELAQHFDTTGTTIRKDLVTLENAGTVIRT 52
                6999*************************************999885 PP

>> UPF0052  Uncharacterised protein family UPF0052
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.11     133     195 ..      46     111 ..      20     126 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                 TS-EEESTTTG.GGG-S...-EEE.EEEESTT-.---HHHHHHHHH-SEEEE-SS-IIIIIHHHHT CS
     UPF0052 133 dGeeitgeski.searklkapikr.vflepega.eaapevleaikeAdlivlgpGslytSiiPiLl 195
                  G++i+    +  +++++++pi++   ++ +++ ++a+ +++ i++ d i+l  Gs +   +P L 
  CTQ29501.1  46 AGTVIRTYGGVvLNKDEADPPIDHkTLINTHKKaQIAEAAVRYIHDGDSIILDAGSTVLQMVPLLS 111
                 566666333331345558999999988887776479***********************9999985 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00021      0.22     102     143 ..       8      49 ..       2      55 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
                 HHHHHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS CS
       DDRGK 102 eefinyikekKvvlleelavkfklktqevierikeLeeqgsl 143
                 + ++++++++  + +eela +f+++ + +++ + +Le+ g++
  CTQ29501.1   8 AAILEFLQSQGKCSVEELAQHFDTTGTTIRKDLVTLENAGTV 49 
                 5789999***9**************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2265.16
//
Query:       CTQ29502.1  [L=321]
Description: putative phosphosugar-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-32  109.9   0.1    1.5e-31  109.0   0.1    1.4  1  SIS       SIS domain
    2.2e-15   56.8   0.2    1.3e-06   28.7   0.0    2.7  3  CBS       CBS domain


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.1   1.6e-35   1.5e-31       2     130 ..      39     169 ..      38     170 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 1.6e-35
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSE CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadl 100
                 ++++ +++v G+G+s++i+k+la++++++g+++++v++a++l+ + l+++d++d++++is+sg +k+l++ ++ + e+g +++a+T++++spla  a+ 
  CTQ29502.1  39 IHCEGKLIVSGIGKSGHIGKKLAATFASTGTPAFFVHPAEALHGD-LGMLDSRDVMLFISYSGSAKELDLIVPRLEEKGIPLLAMTGKSTSPLALAAKA 136
                 78999************************************9999.***************************************************** PP

                 EEEEEEECHC...SSSHCHHHHHHHHHHHHHHH CS
         SIS 101 alyinaepet...lvastksltaqlaaldalav 130
                 +l+i++e+e+   ++a+t+s++ +l+++dala+
  CTQ29502.1 137 VLDIAVEREAcpmHLAPTSSTVNTLMLGDALAM 169
                 *******************************97 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.69   6.2e+03      43      56 ..      84      97 ..      84      98 .. 0.85
   2 !   25.3   0.1   1.7e-09   1.5e-05       1      56 [.     199     256 ..     199     257 .. 0.88
   3 !   28.7   0.0   1.4e-10   1.3e-06       2      48 ..     266     312 ..     265     318 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.69
                EEEEEHHHHHHHHH CS
         CBS 43 vGivtlrDllrall 56
                +G++  rD++ +++
  CTQ29502.1 84 LGMLDSRDVMLFIS 97
                599999***99986 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 1.7e-09
                 HHHHSBS..SCEEEETTSBHHHHHHHHHHHTSSEE.EEEETTTBEEEEEEHHHHHHHHH CS
         CBS   1 Vgdimtr..dvvtvppdttleealelmrekgvsrl.PVVdedgklvGivtlrDllrall 56 
                 V+++m+r  +v+ v+ ++++ +a+ ++ ++g+ +l  V de +++ G++t+ Dl r+l+
  CTQ29502.1 199 VHHLMRRdeEVPRVNTEANVMDAMLELSRTGL-GLvAVCDEANRVQGVFTDGDLRRWLV 256
                 678899977889***************99999.772555*****************986 PP

  == domain 3  score: 28.7 bits;  conditional E-value: 1.4e-10
                 HHHSBSSCEEEETTSBHHHHHHH.HHHHTSSEEEEEETTTBEEEEEEH CS
         CBS   2 gdimtrdvvtvppdttleealel.mrekgvsrlPVVdedgklvGivtl 48 
                 +  mtr+ vt+  d+   ea e+ m ++++s+ PVVde+g+lvG + l
  CTQ29502.1 266 TRAMTRNGVTLQADSRAVEAKERlM-KHKISAAPVVDENGQLVGAINL 312
                 56799999***************66.999***************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2538.31
//
Query:       CTQ29503.1  [L=516]
Description: DNA-binding transcriptional activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-67  224.0   0.0    1.3e-66  223.4   0.0    1.3  1  Sigma54_activat  Sigma-54 interaction domain
    1.2e-22   80.5   0.0    3.4e-22   79.0   0.0    1.8  1  Sigma54_activ_2  Sigma-54 interaction domain
    2.3e-09   38.0   0.2    6.6e-09   36.5   0.0    1.8  2  GAF              GAF domain
    1.4e-06   28.7   3.2    1.6e-06   28.5   0.4    2.3  2  GAF_2            GAF domain
    1.7e-06   27.6   0.1      0.067   12.6   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    1.1e-05   25.9   0.0    2.4e-05   24.8   0.0    1.6  1  AAA              ATPase family associated with various cellul
    0.00015   20.9   0.0    0.00027   20.1   0.0    1.3  1  MCM              MCM P-loop domain
    0.00015   21.7   0.0    0.00031   20.8   0.0    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0062   16.3   1.5      0.017   14.9   1.3    1.9  1  HTH_8            Bacterial regulatory protein, Fis family
  ------ inclusion threshold ------
      0.014   15.8   0.3       0.23   11.8   0.0    2.6  3  GAF_3            GAF domain
      0.058   13.2   0.0       0.13   12.0   0.0    1.6  1  DBD_HTH          Putative DNA-binding domain
      0.087   12.9   0.0       0.17   12.0   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
        0.1   12.3   0.0       0.18   11.5   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
       0.25   10.8   0.0       0.42   10.1   0.0    1.2  1  AAA_7            P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.4   0.0   1.1e-69   1.3e-66       1     167 [.     187     353 ..     187     354 .. 0.98

  Alignments for each domain:
  == domain 1  score: 223.4 bits;  conditional E-value: 1.1e-69
                      ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTT CS
  Sigma54_activat   1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadg 94 
                      +ig s  + +l ++i+ va++dl+vli Ge+GtGKel+a+a+h+ s+r+++p+v +ncaa+pe++ eseLFGh+kGaFtGA ++++G+fe ad+
       CTQ29503.1 187 IIGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADN 280
                      678889999************************************************************************************* PP

                      SEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEE CS
  Sigma54_activat  95 GtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnviei 167
                      GtlfLDeigel+l+lQ+kLlrvlq g ++rvG++++ +vdvr++aatn+dl+++v eg+fr+dLy+rl+v+++
       CTQ29503.1 281 GTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPL 353
                      **********************************************************************987 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   2.7e-25   3.4e-22       1     138 []     188     358 ..     188     358 .. 0.92

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 2.7e-25
                      X---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.......................HHHHHHTTTS CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.......................ldlleqakgg 71 
                      +g s ++ +lk++++ +a+s l+v++ Ge G+gkelvA++ h+ s +  ++ v+ ++a+lp                       +  +e a++g
       CTQ29503.1 188 IGLSGPMLQLKKEIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPesvaeselfghvkgaftgaisnrSGKFEMADNG 281
                      57788999*****************************************************777787777777777777777666667779*** PP

                      EEEEEE-TT--HHHHHHHHHHHHH..........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  72 tLylkdiadlskaeqkeLlellak..........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      tL+l +i +ls a+q++Ll +l+           + + ++r+ +++ +dl q++ +g+f + L+ +Ls + l vPpL
       CTQ29503.1 282 TLFLDEIGELSLALQAKLLRVLQYgdiqrvgddrSLRVDVRVLAATNRDLRQEVVEGRFRADLYHRLSVFPLSVPPL 358
                      *******************************9974499**************************************9 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   5.2e-12   6.6e-09       6     133 .]      25     161 ..      21     161 .. 0.76
   2 ?   -2.2   0.0       4.7     6e+03      55      95 ..     410     442 ..     374     471 .. 0.57

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 5.2e-12
                 HHHHHHHHHHHHTESEEEEEEEEETTEEECEEEEECC........EEEETTSHHHHHHHHHSSSEEESTGGTSTTHHTT..HHHHHHHHTTESEEEEEE CS
         GAF   6 ldtvveelrellgadrvalylpdydGlhydipqasrw........lfmkngrgicgqvlatgqplvipdstpdprfaqy..nrrdllenmgirsslvvP 94 
                 + +++ +lr++lg+d  al++  y+  ++ +p a +          f  +g+++  ++++ g+++++p   +d++  ++        e   +++++++P
  CTQ29503.1  25 FSRLITTLRQILGCDASALLR--YEAHQF-VPLAIDGlaqdvlgrRFALEGHPRLEAIARAGDVVRFP---ADSDLPDPydGLIPGHESLKVHACVGLP 117
                 778999*************77..555333.44433333333444566777888888999*********...7777666656356677889999****** PP

                 EEETTEEEEEEEEEESSS....CSHHHHHHHH.HHHHHHHHHHH CS
         GAF  95 lvndgelwGllvlhnpsp....pftreelell.qvladqvaval 133
                 l++++ l+G+l+l+  ++    +f++eel+l+   +a  +++al
  CTQ29503.1 118 LFAGQTLIGALTLDGMDAdrfdSFSDEELRLIaALVAGALNNAL 161
                 ***************555567789*******9777887777775 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.7
                 HHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEE CS
         GAF  55 vlatgqplvipdstpdprfaqynrrdllenmgirsslvvPl 95 
                 +++  +++v+++     +  +     +le+ +++ ++++P+
  CTQ29503.1 410 AIH--RAVVLAR---ATQAGD---EVVLEPQHFQFAVAAPM 442
                 333..4444442...222222...22333444444444444 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.4   1.2e-09   1.6e-06       8     134 ..      25     154 ..      22     158 .. 0.74
   2 ?   -0.7   0.1       1.3   1.6e+03      24      72 ..     385     430 ..     369     455 .. 0.66

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.2e-09
                 HHHHHHHHHHS.S..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B---TT.H.HHHHHHHTS-EEES-.GGG.-S-HHHHH.HHHHTT--EEEEEE-T CS
       GAF_2   8 ldlvldelvel.gaalgyillvdddgglrlaawgeaeeefgaaldrplgeg.l.vgealrtgrpvilnd.lee.dpdkkglp.aghaglrsflavPlis 100
                 +++++ +l+++ g++++ +l +++++ + la  g a++ +g ++  +l eg + ++ ++r g  v +   ++  dp+    p ++  ++++++++Pl++
  CTQ29503.1  25 FSRLITTLRQIlGCDASALLRYEAHQFVPLAIDGLAQDVLGRRF--AL-EGhPrLEAIARAGDVVRFPAdSDLpDPYDGLIPgHESLKVHACVGLPLFA 120
                 56788899**66***********99987788*************..77.6667799******999974422223444444445666667777******* PP

                 TS---EEEEES.........--HHHHHHHHHHHHHHH CS
       GAF_2 101 egrvvGvlnlyankppa...fdeedlelLeelaeqia 134
                 +  ++G+l+l + + ++   f++e+l+l+ +l   +a
  CTQ29503.1 121 GQTLIGALTLDGMDADRfdsFSDEELRLIAAL---VA 154
                 889*******7777777333666666665555...44 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.3
                 EEEEE-TTS-EEEEEEEES-TTSTT-S-B---TT.HHHHHHHHTS-EEES CS
       GAF_2  24 yillvdddgglrlaawgeaeeefgaaldrplgeg.lvgealrtgrpviln 72 
                 +il   ++++  l  w+ ++     ++  ++ ++ ++++a + g +v+l+
  CTQ29503.1 385 VILAEAARNR--LQQWSWPGNVRELEH--AIHRAvVLARATQAGDEVVLE 430
                 2333234445..677777777777777..777775688888888888764 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   6.2e-05     0.079      11      44 ..     197     230 ..     190     240 .. 0.89
   2 !   12.6   0.0   5.2e-05     0.067      93     156 ..     266     327 ..     249     330 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.2e-05
  Mg_chelatase  11 akraleiaaaGgHnlllvGppGsGKtmlakrlps 44 
                    k+ ++i aa   n+l+ G  G+GK ++ak++++
    CTQ29503.1 197 LKKEIDIVAASDLNVLISGETGTGKELVAKAVHQ 230
                   588999************************9876 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.2e-05
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaam 156
                   g  + + G+  +a nG LfLDE+ e++      L + l+ g +  +r   + +   ++ ++aa+
    CTQ29503.1 266 GAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDI--QRVGDDRSLRVDVRVLAAT 327
                   45577899999***************99999888888888865..4555555555555555555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.9e-08   2.4e-05       1     125 [.     211     341 ..     211     348 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.9e-08
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsell.skyvgesekkirelfkeakeka.......kpsilfiDEidalaksrsgseseeeervvnq 88 
                 vl++G  GtGK l+akav + +     +++ ++++ l  s   +e   ++++ f+ a +++       +   lf+DEi +l  +            +++
  CTQ29503.1 211 VLISGETGTGKELVAKAVHQGSpraANPLVYLNCAALPeSVAESELFGHVKGAFTGAISNRsgkfemaDNGTLFLDEIGELSLAL-----------QAK 298
                 799*****************96333588999999999933334444467777777764444455777566***********8888...........999 PP

                 HHHHHHHTTTS........SSTEEEEEEESSGGGSTHHHHSTTSS CS
         AAA  89 Llteldgvkkk........eskvivigatnrpdkldpallrgRfd 125
                 Ll++l+  + +        + +v v++atnr  +l ++++ gRf 
  CTQ29503.1 299 LLRVLQYGDIQrvgddrslRVDVRVLAATNR--DLRQEVVEGRFR 341
                 9999998888888999999777********9..344444336665 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.1e-07   0.00027      53     173 ..     204     329 ..     188     340 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.1e-07
                 BBCSS-EEEEEESSTSTHHHHHHHHHHHSSSE....EEEESSS....SSSSHSSSEEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHH CS
         MCM  53 klrgdinvllvgdpgtaKsqlLkyveklapra....vytsgkg....ssaagLtaavvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhE 143
                    +d nvl+ g+ gt+K  + k+v++ +pra    vy + ++      +++L   v +   tg +   +G   +ad+G + +De+ + + + + +l+ 
  CTQ29503.1 204 VAASDLNVLISGETGTGKELVAKAVHQGSPRAanplVYLNCAAlpesVAESELFGHV-KGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLR 301
                 46789************************9985555677765412115567787775.6889999********************************** PP

                 HHHHSEEEEESSSCEEEEE--EEEEEEE-- CS
         MCM 144 amEqqtisiaKaGivatLnartsvlaAanp 173
                 ++      i++ G   +L+  + vlaA+n 
  CTQ29503.1 302 VLQYG--DIQRVGDDRSLRVDVRVLAATNR 329
                 *9766..56789999999999999999985 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.4e-07   0.00031       1     123 [.     210     330 ..     210     347 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.4e-07
                 EEEEE--SSSSHHHHHHHGGGGB...S--EEEE...E--TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal...nreveyv...qltrdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleer 92 
                 +vl+ G++GtgK  +a+ + +      ++++y    +l+++  e++l+g+++ +  g  s + +++   +    +l+lDE+ +++ + +++Ll++l   
  CTQ29503.1 210 NVLISGETGTGKELVAKAVHQGSpraANPLVYLncaALPESVAESELFGHVKGAfTGAISNRSGKFE--MADNGTLFLDEIGELSLALQAKLLRVLQYG 306
                 699****************999988766666651125678999*********766666666666665..779999************************ PP

                 EEE..-SSSEEE---......-EEEEEESS- CS
       AAA_5  93 rllleeggelvkaknddllerfrviatanpl 123
                  ++    ++  +++       +rv+a++n+ 
  CTQ29503.1 307 DIQRVGDDRSLRVD-------VRVLAATNRD 330
                 *9954444444443.......8999999975 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.3   1.3e-05     0.017       5      36 ..     466     497 ..     463     503 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHH CS
       HTH_8   5 vEkelIeaALertgGnkskAArlLGisRrtLy 36 
                 + +e+I  ALe+++Gn +++Ar L +    L+
  CTQ29503.1 466 FQREAISRALEANQGNWAATARALELDVANLH 497
                 789********************988766665 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00018      0.23      13     129 .]      32     159 ..      23     159 .. 0.59
   2 ?   -3.2   0.0       7.6   9.8e+03      49      89 ..     200     240 ..     183     241 .. 0.67
   3 ?    0.8   0.1      0.45   5.8e+02      41      88 ..     402     453 ..     378     460 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
       GAF_3  13 lvkllgaevgalllldedgnklqvaagw.dgkpalse..sldedsalarralssgevvsepsf...........aeedglpdraalavPLvagrqviGv 97 
                 l ++lg++++all +++   ++++ a    ++++l +  +l+ +  l + a + g vv +p+            ++ ++l  +a + +PL ag+++iG 
  CTQ29503.1  32 LRQILGCDASALLRYEAH--QFVPLAIDgLAQDVLGRrfALEGHPRLEAIARA-GDVVRFPADsdlpdpydgliPGHESLKVHACVGLPLFAGQTLIGA 127
                 556666666666555544..444444442344444443344444444444433.334444333122222222233445577788888************ PP

       GAF_3  98 lalastkprafdaedlelleslArqiataier 129
                 l l  ++   fd+   e l+ +A+++a a+ +
  CTQ29503.1 128 LTLDGMDADRFDSFSDEELRLIAALVAGALNN 159
                 ***98888888888888888888888888865 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.6
       GAF_3  49 sldedsalarralssgevvsepsfaeedglpdraalavPLv 89 
                 ++d+  a   ++l sge  ++++  ++  +++++  a PLv
  CTQ29503.1 200 EIDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLV 240
                 55544444556777778777777777777777777777765 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.45
       GAF_3  41 dgkpalsesldedsalarralssgevvsepsf....aeedglpdraalavPL 88 
                 ++   l++++ ++  lar++++ +evv ep+      +++ lp++ a a+P 
  CTQ29503.1 402 GNVRELEHAIHRAVVLARATQAGDEVVLEPQHfqfaVAAPMLPTETAAAAPA 453
                 55666777888999999*******9988855412114467788888888885 PP

>> DBD_HTH  Putative DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0001      0.13      12      29 ..     138     155 ..     136     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
     DBD_HTH  12 LDsldDkeLsiieatakG 29 
                 +Ds++D eL +i+a++ G
  CTQ29503.1 138 FDSFSDEELRLIAALVAG 155
                 7**************988 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00013      0.17       5     109 ..     210     309 ..     207     344 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---.......----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHH CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselle.......eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVq 96 
                 ++l+ g+tg+Gk+++aka+ +    +  ++l+ +++ +l e          v+   +  i ++ g  + +++G ++lDEi   +              q
  CTQ29503.1 210 NVLISGETGTGKELVAKAVHQGSP-RAANPLVYLNCAALPEsvaeselFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL-----------ALQ 296
                 799********************9.9*************99887655545678888889999999999************98888...........888 PP

                 HHHHHHHH--EE- CS
       AAA_2  97 rdLLqileggtlt 109
                   LL++l  g ++
  CTQ29503.1 297 AKLLRVLQYGDIQ 309
                 8888888777766 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014      0.18      48     101 ..     209     262 ..     195     305 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00014
   IstB_IS21  48 enivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrdgklar 101
                  n+++ G +G+GK  +a a+ +   ra    +++  ++L e+++  +  g+++ 
  CTQ29503.1 209 LNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNCAALPESVAESELFGHVKG 262
                 59*************************************999998876666554 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00033      0.42      26      69 ..     201     244 ..     194     252 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00033
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdllkkldkekylsltinf 69 
                 ++ + +++ +vl+ G+tGtGK +++k + +  ++     + +n+
  CTQ29503.1 201 IDIVAASDLNVLISGETGTGKELVAKAVHQGSPRAANPLVYLNC 244
                 566778899****************9999888866666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3998.28
//
Query:       CTQ29504.1  [L=482]
Description: flavorubredoxin oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-20   73.4   3.3    1.9e-20   72.6   3.3    1.5  1  Rubredoxin     Rubredoxin
    1.8e-12   47.7   0.0      3e-12   47.0   0.0    1.4  1  Flavodoxin_1   Flavodoxin
    2.1e-10   40.9   0.2      3e-10   40.5   0.2    1.3  1  Lactamase_B    Metallo-beta-lactamase superfamily
    1.6e-06   27.8   0.6    3.3e-06   26.8   0.6    1.5  1  Lactamase_B_2  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
      0.021   14.2   0.0      0.039   13.4   0.0    1.3  1  Lactamase_B_6  Metallo-beta-lactamase superfamily domain
      0.062   13.2   0.0       0.13   12.2   0.0    1.5  1  YliH           Biofilm formation protein (YliH/bssR)
      0.081   12.8   0.1       0.14   12.0   0.1    1.4  1  Lactamase_B_3  Beta-lactamase superfamily domain
       0.11   12.2   0.3       0.29   10.9   0.0    1.8  2  DnaT           DnaT DNA-binding domain
       0.13   12.1   0.0       0.89    9.4   0.0    1.9  2  DUF829         Eukaryotic protein of unknown function (DUF829
       0.21   11.5   1.4       0.51   10.3   1.4    1.7  1  PHD            PHD-finger


Domain annotation for each model (and alignments):
>> Rubredoxin  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   3.3   1.1e-23   1.9e-20       2      47 .]     429     474 ..     428     474 .. 0.97

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 1.1e-23
                 EEETTT-BEEETTTBBGGGTB-TT--GGGS-TT-BBTTTB-BGGGE CS
  Rubredoxin   2 yeCkvCgyvYdpakGdpdegiapgTkFedlPddWvCPdCgvekeqF 47 
                 ++C+vC++vYdpakG+p+++++pgT+++++Pd++ CP+C+++k+ F
  CTQ29504.1 429 MQCSVCQWVYDPAKGEPNQDVQPGTPWSEVPDNFLCPECSLGKDVF 474
                 89*****************************************988 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.7e-15     3e-12       1     142 [.     256     388 ..     256     389 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.7e-15
                   EEEETSSSHHHHHHHHHHHHHHH..TTTEEEEEEEEGTTSC..GGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEE CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelge..hgfnadvvslsdydes..lseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavf 93 
                   i+Y+++  nt+++A ++a+++ e    + ++++++++ d++  l ++ + + +lv+tsT++n  +p      + + l +++   +   + ++r    
    CTQ29504.1 256 IFYDTMSNNTRMMADAIAQGITEvdPRVAVKIFNVARSDKNdiLTNVFRSKGVLVGTSTMNNVMMP------KIAGLVEEM---TGLRFRNKRA--S 341
                   8*********************94455667778888888767767777777777788877777777......444444444...4566899996..9 PP

                   EEECTTSSSTTHHHHHHHHHHHHTTCEEESSSEEEETTST.HGHHHHHHH CS
  Flavodoxin_1  94 glGdsayenFcaagkkldekleelGaerllkllegdednq.egqeeafrk 142
                   ++G++++++   a+++l ++l+++G+e+ l  l+++  ++ +++e ++++
    CTQ29504.1 342 AFGSHGWSG--GAVDRLSTRLQDAGFEMSLS-LKAKWRPDiDALELCRQH 388
                   99*******..*******************9.****99999999998876 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.2   1.6e-13     3e-10       5     155 ..      34     171 ..      30     257 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 1.6e-13
                  SSEEEEEEETTCEEEES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCHC CS
  Lactamase_B   5 pvnsyliegdggviLiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagvs 102
                  + nsyli  +++++LiDt  +     +++   ++++++ d+d++++ H+  DH+G+l +l+ + +  ++++ + a   ++ ++             + 
   CTQ29504.1  34 SYNSYLI-REEKNVLIDTVDHKFSREFVQ-NLRREIDLADLDYIVINHAEEDHAGALTELMMQIPDTPIYCTANAIDSINGHHHH-----------PE 118
                  569****.6**********9999999887.66799*************************9999999999999999999999955...........66 PP

                  GCCEEEEETTTEECCCTEEEEEHECTTSTSCCEEEEEETTCCEEEECTTTSSH CS
  Lactamase_B 103 adkpdvdeeeldgnaggrralyvtggpghghghgvveygggkvlftGDallag 155
                  ++ ++v++ ++ +++ g ++  v    +h ++++  ++ g+ vlf+ Da+ ++
   CTQ29504.1 119 WNFHVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQH 171
                  66788*******************************************98765 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.6   1.8e-09   3.3e-06       2     115 ..      45     148 ..      44     167 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.8e-09
                    EEEES--TT.....HHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-T CS
  Lactamase_B_2   2 riLiDagpd.....lrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvheldw 92 
                    ++LiD++       ++q+        ++  +l+++d +++ ha+ DH   l  l   +  + p+y+++  ++ ++ +       ++p+ n+h +++
     CTQ29504.1  45 NVLIDTVDHkfsreFVQN-------LRREIDLADLDYIVINHAEEDHAGALTELMM-QIPDTPIYCTANAIDSINGH------HHHPEWNFHVVKT 126
                    899999988655555555.......3334699****************66666666.55579***************......455789999**** PP

                    TSEEEECSTTEEEEEEEE-EE-- CS
  Lactamase_B_2  93 gesfelgdggleitatparhksg 115
                    g+++++g+g+ ++ +++ +  + 
     CTQ29504.1 127 GDTLDIGNGK-QLIFVETPMLHW 148
                    ******7644.555555555444 PP

>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.2e-05     0.039       7      74 ..      44     105 ..      39     108 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.2e-05
  Lactamase_B_6   7 vkiLlDvGwdeskvslesalkelekvi..ptvdliLLshatlehlGayallyakfksklllnipvyatlp 74 
                     ++L+D   ++   s ++ +++l++ i   ++d i++ ha+ +h Ga++ l++++      + p+y+t  
     CTQ29504.1  44 KNVLIDTVDHKF--S-REFVQNLRREIdlADLDYIVINHAEEDHAGALTELMMQI-----PDTPIYCTAN 105
                    568888766654..3.467888888753389*****************9999876.....4789999976 PP

>> YliH  Biofilm formation protein (YliH/bssR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.3e-05      0.13      32     101 ..      37     106 ..      25     114 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.3e-05
        YliH  32 Gymsvsesdhlrdnl.felnrelrdkalrlqlaldqeerdalrraeealaaaavclmsGhhdcplviavna 101
                  y+   e++ l d +  +++re+  + lr +  l + ++ ++++aee  a a   lm    d p++ + na
  CTQ29504.1  37 SYLIREEKNVLIDTVdHKFSREFV-QNLRREIDLADLDYIVINHAEEDHAGALTELMMQIPDTPIYCTANA 106
                 577778889999987468899985.78999**************************************997 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   7.9e-05      0.14       8      83 ..      36     145 ..      31     187 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.9e-05
  Lactamase_B_3   8 nsflletagarilvDPf........kanlgyeppaeeaDlvlisqaledHahletlkql........................aenvkvleegesl 71 
                    ns+l++ +++++l+D +         +nl  e++  + D ++i++a edHa + t   +                        + n++v+++g++l
     CTQ29504.1  36 NSYLIR-EEKNVLIDTVdhkfsrefVQNLRREIDLADLDYIVINHAEEDHAGALTELMMqipdtpiyctanaidsinghhhhpEWNFHVVKTGDTL 130
                    777775.5799999998666665432255666666***************9876555447799999999999999999999988899999999998 PP

  Lactamase_B_3  72 evg...gleiravat 83 
                    ++g   +l + +++ 
     CTQ29504.1 131 DIGngkQLIFVETPM 145
                    885322444455555 PP

>> DnaT  DnaT DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       6.1   1.1e+04      52      61 ..      56      65 ..      52      66 .. 0.73
   2 ?   10.9   0.0   0.00016      0.29       3      30 ..     371     399 ..     369     403 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6.1
        DnaT 52 nqkFvqhvkr 61
                 + Fvq+++r
  CTQ29504.1 56 SREFVQNLRR 65
                5789999988 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00016
        DnaT   3 mtadWqPsedfleilalag.aidedfted 30 
                 ++a+W+P+ d+le+++++g  i ++++ +
  CTQ29504.1 371 LKAKWRPDIDALELCRQHGrDIARQWALS 399
                 7899***************8898887765 PP

>> DUF829  Eukaryotic protein of unknown function (DUF829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0005      0.89      33      88 ..     222     275 ..     219     286 .. 0.84
   2 ?   -0.0   0.0      0.38   6.8e+02      59      87 ..     288     316 ..     282     333 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0005
      DUF829  33 itspsrdllwrtkrlasaldellellsesqrseywpilfhvfsngGpllylallaa 88 
                 + ++s  ++wr ++  +++++ le+ +++q+++  +i++ ++sn+  +++ a+++ 
  CTQ29504.1 222 MIATSHGVVWR-DNPTQIVEKYLEWAADYQEDRI-TIFYDTMSNNTRMMADAIAQG 275
                 77888889999.79999***************76.*********988888777654 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.38
      DUF829  59 sesqrseywpilfhvfsngGpllylalla 87 
                 ++ +rs++++il  vf   G+l+ +++++
  CTQ29504.1 288 FNVARSDKNDILTNVFRSKGVLVGTSTMN 316
                 556678889**************999994 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.4   0.00028      0.51       2      50 ..     415     468 ..     414     470 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00028
                 BTTTTS.TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSS.......TBSSTTTH CS
         PHD   2 CavCkk.ksdeeeelvqCdgCkrwfHqkClkppleseekpeg.......ewlCekCk 50 
                 C +C + ++ + + ++qC  C+  + ++  +p+++ ++   +       ++lC++C+
  CTQ29504.1 415 C-ACAAaAAADLGPMMQCSVCQWVYDPAKGEPNQDVQP--GTpwsevpdNFLCPECS 468
                 8.8999788889**********9999999999988444..335588999*******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3710.63
//
Query:       CTQ29505.1  [L=377]
Description: NADH:flavorubredoxin oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-51  175.5   0.0    1.8e-51  175.1   0.0    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    9.8e-21   73.3   0.0    1.9e-20   72.4   0.0    1.5  1  Rbx_binding     Rubredoxin binding C-terminal domain
    2.2e-20   73.0   0.0    5.1e-19   68.6   0.0    2.3  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    2.3e-14   53.4   0.0    2.8e-14   53.1   0.0    1.1  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    7.9e-10   38.4   0.1    1.2e-06   28.0   0.0    3.0  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    6.9e-09   35.7   2.8     0.0035   17.0   0.5    3.2  3  DAO             FAD dependent oxidoreductase
    1.2e-07   31.1   1.6     0.0098   15.0   0.0    3.1  3  Lycopene_cycl   Lycopene cyclase protein
    6.2e-06   26.6   0.0    0.00069   20.0   0.0    2.4  2  NAD_binding_7   Putative NAD(P)-binding
    4.1e-05   22.5   1.1       0.12   11.1   0.0    3.1  3  HI0933_like     HI0933-like protein
    9.6e-05   22.4   2.7       0.22   11.5   0.3    4.0  4  NAD_binding_9   FAD-NAD(P)-binding
     0.0002   20.8   0.1    0.00034   20.1   0.1    1.3  1  ThiF            ThiF family
    0.00023   21.4   0.0       0.26   11.6   0.0    2.5  2  TrkA_N          TrkA-N domain
    0.00032   20.6   0.4      0.001   19.0   0.2    1.8  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0017   17.7   2.4      0.023   14.0   0.4    2.2  2  FAD_binding_3   FAD binding domain
  ------ inclusion threshold ------
      0.013   15.1   0.3       0.17   11.5   0.1    2.6  3  ApbA            Ketopantoate reductase PanE/ApbA
       0.02   14.2   0.4      0.091   12.1   0.2    2.0  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
      0.027   14.0   0.0      0.053   13.1   0.0    1.5  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
      0.033   13.5   0.0      0.043   13.1   0.0    1.3  1  Amino_oxidase   Flavin containing amine oxidoreductase
      0.034   14.4   0.0       0.17   12.1   0.0    2.2  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      0.044   12.9   0.1        0.1   11.6   0.2    1.6  2  GIDA            Glucose inhibited division protein A
      0.048   13.7   0.2          1    9.4   0.0    2.3  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
      0.049   14.2   0.8        9.9    6.8   0.1    2.8  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
      0.082   12.4   0.3       0.18   11.2   0.3    1.6  1  adh_short       short chain dehydrogenase
       0.11   12.7   0.0       0.21   11.9   0.0    1.3  1  UAF_Rrn10       UAF complex subunit Rrn10


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.1   0.0   2.4e-54   1.8e-51       3     278 ..       5     275 ..       3     285 .. 0.89

  Alignments for each domain:
  == domain 1  score: 175.1 bits;  conditional E-value: 2.4e-54
                  EEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCT..CEEEEESCEEEEETEEECTCEE CS
                  xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgee..vvkidpgkkkvklekkkegdee 96 
                  +v+iG+G+A+ ++ +++++  a++  tl+ ++ +  ++++ ls+++ + +++ +  ++   ++ ++++l+l  +  v +id +++ vk  ++     +
   CTQ29505.1   5 IVIIGSGFAARQLVKNIRKqdAQIPLTLIAADSMDEYNKPDLSHVISRGQKADDLTLQSAGEFAEQYTLRLFPHtwVSDIDAENRLVKS-HD-----N 96 
                  8******************77799999999999999************9999998887777888887766653336999*999955555.33.....4 PP

                  EEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
  Pyr_redox_2  97 kiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaaleea 192
                  +  ydklvlAtG++p+++ +pG  e   +l  + ++  a +++l + kr+++vGgG+iG+ElA+ ++++gk vt+v+    +l   +++e+s +l+++
   CTQ29505.1  97 QWRYDKLVLATGATPFIPSVPGR-ELMLTL-NSQREYGAAQSQLHDaKRVLIVGGGLIGCELAMDFCRAGKAVTVVDNSASVLaALMPPEASSRLQHR 192
                  79*********************.666655.4445555555555559************************************99************* PP

                  HHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 193 lekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDva 278
                  l+++Gv+++l+t+ + +++  + ++v l+ ++ i +d vv a+G+ p+t+l+ +++gl++  ++givv+++l+t++p iya+GD+a
   CTQ29505.1 193 LTEMGVHLMLKTQLEGLEQTADGIRVSLDRQRAITVDAVVAAAGLHPETSLA-RHAGLQI--NRGIVVNSQLQTSDPAIYALGDCA 275
                  ****************************************************.*******..9*********************** PP

>> Rbx_binding  Rubredoxin binding C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   2.5e-23   1.9e-20       2      71 .]     306     375 ..     305     375 .. 0.98

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 2.5e-23
  Rbx_binding   2 valpampVkVKTpalPlvvappakgaegeWqietdgeglrarfrdaegqllGFaltgeavkerqaLlkel 71 
                  ++lp+m+VkVKTp lPl +a+ +++ +++W+i +++egl+a+ +dae+ql+ F+++++++ke++aLlk+l
   CTQ29505.1 306 LKLPPMLVKVKTPDLPLHLAGDTRRDDLTWNIVAAKEGLVAKGVDAENQLRAFVVSEDKMKEAFALLKQL 375
                  89******************************************************************98 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.43   3.2e+02       2      20 ..       5      23 ..       4      40 .. 0.78
   2 !   68.6   0.0   6.8e-22   5.1e-19       1      78 [.     143     218 ..     143     223 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.43
                EEEECSSHHHHHHHHHHHH CS
   Pyr_redox  2 vvvvGgGyiglElAgalae 20
                +v++G+G+ +  l +++++
  CTQ29505.1  5 IVIIGSGFAARQLVKNIRK 23
                89******99877777665 PP

  == domain 2  score: 68.6 bits;  conditional E-value: 6.8e-22
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsedgvesvkl 78 
                 +v++vGgG+ig+ElA  + + gk Vtvv++s  +l  l+++eas++lq +l+++g++++l+t++e +e+++dg   +++
  CTQ29505.1 143 RVLIVGGGLIGCELAMDFCRAGKAVTVVDNSASVLaALMPPEASSRLQHRLTEMGVHLMLKTQLEGLEQTADG---IRV 218
                 79**********************************************************************9...443 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   3.7e-17   2.8e-14      84     289 ..      61     257 ..      20     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 3.7e-17
  Pyr_redox_3  84 leYlrevaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvk....efhkyagqkvvViGgknSav 177
                  l+   e a+++ l+   ++ V +++ e++   v++  ++ + +k+++AtG    P  +++pG e   + +s+ +    + +    ++v+++Gg+  ++
   CTQ29505.1  61 LQSAGEFAEQYTLRLFPHTWVSDIDAENR--LVKSHDNQWRYDKLVLATGA--TPFIPSVPGRELMLTLNSQREygaaQSQLHDAKRVLIVGGGLIGC 154
                  55556788999999999999999998875..6999999************9..***********74444444332111333345899*********** PP

  Pyr_redox_3 178 DaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflk 275
                  + A++++r+g+ Vtvv++++++ +      + + p   +rl++ ++e  ++++ +++++ ++++   ++v+ ++++ ++v d vv+a G +p++s+ +
   CTQ29505.1 155 ELAMDFCRAGKAVTVVDNSASVLA------ALMPPEASSRLQHRLTEMGVHLMLKTQLEGLEQTADGIRVSLDRQRAITV-DAVVAAAGLHPETSLAR 245
                  ******************986555......46788999999999988669************************888877.899*************9 PP

  Pyr_redox_3 276 kslfeldedgrpvl 289
                  ++++++  ++ +v+
   CTQ29505.1 246 HAGLQI--NRGIVV 257
                  999888..333333 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.018        13     193     224 ..       4      35 ..       1      51 [. 0.88
   2 !   28.0   0.0   1.6e-09   1.2e-06     141     218 ..      92     168 ..      78     180 .. 0.85
   3 ?    2.1   0.1      0.12        88     291     340 ..     194     237 ..     172     239 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.018
  K_oxygenase 193 riaVvGsGqSaaeifedllrrqkkvelklvtr 224
                   i+++GsG  a ++++++ ++ ++  l+l++ 
   CTQ29505.1   4 GIVIIGSGFAARQLVKNIRKQDAQIPLTLIAA 35 
                  79*******************99999999875 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 1.6e-09
  K_oxygenase 141 egeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkve 218
                  + + ++++  +lvl++G +p iP+v  +     ++  + ey   +++l+++kr+++vG+G  + e+++d  r  k+v+
   CTQ29505.1  92 KSHDNQWRYDKLVLATGATPFIPSVPGREL-MLTLNSQREYGAAQSQLHDAKRVLIVGGGLIGCELAMDFCRAGKAVT 168
                  556789999***************988765.578888889*****************************999877654 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.12
  K_oxygenase 291 geerlrllpnrevesaeaegkgeveltlrneesgeeetlevdavvlATGY 340
                  +e  ++l+ ++++e++e++++ +++++l+      ++ ++vdavv A G 
   CTQ29505.1 194 TEMGVHLMLKTQLEGLEQTAD-GIRVSLDR-----QRAITVDAVVAAAGL 237
                  455789999**********97.99999987.....78999*******996 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.047        35     153     229 ..      64     127 ..       5     141 .. 0.71
   2 !   17.0   0.5   4.7e-06    0.0035       1      29 [.     143     173 ..     143     188 .. 0.90
   3 !   13.8   0.1   4.3e-05     0.032     145     207 ..     182     243 ..     177     287 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.047
                 HHH.HHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEE CS
         DAO 153 ara.aealGveilegtevtgleeedgkvwgverttpgendaadavVnaaGawsdllgllkeldlpispvrgqvlvlkp 229
                 a + ae+   +++ +t v ++++e+ ++++  +    ++ ++d++V+a+Ga   ++        p +p r  +l+l+ 
  CTQ29505.1  64 AGEfAEQYTLRLFPHTWVSDIDAEN-RLVKS-H---DNQWRYDKLVLATGAT-PFI--------PSVPGRELMLTLNS 127
                 4443788888999999999997653.32332.2...22324699******76.233........55777777777744 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4.7e-06
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..Vtllekg 29 
                 +v+i+GGG iG+  A++  r+g  Vt+++ +
  CTQ29505.1 143 RVLIVGGGLIGCELAMDFCRAGkaVTVVDNS 173
                 59*******************99*****986 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 4.3e-05
                 HHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE....EECT.EEEEEEEEEEE--GGGHH.HH CS
         DAO 145 pakltaalaraaealGveilegtevtgleeedgkvwgve....rttp.gendaadavVnaaGawsd.ll 207
                 p ++   l++++ + Gv++ ++t+ +gle++   + g++    r  +  +  ++davV aaG++    l
  CTQ29505.1 182 PPEASSRLQHRLTEMGVHLMLKTQLEGLEQT---ADGIRvsldR--QrAI--TVDAVVAAAGLHPEtSL 243
                 55666679999*****************886...4444333322..2233..58********9976533 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.093        69       2      34 ..       5      36 ..       4      43 .. 0.87
   2 !   10.8   0.7   0.00024      0.18       2      37 ..     144     177 ..     143     181 .. 0.91
   3 !   15.0   0.0   1.3e-05    0.0098      91     177 ..     187     274 ..     183     300 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.093
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieasp 34
                   +v+iG+G A  +l +++ ++ +++ ++li a++
     CTQ29505.1  5 IVIIGSGFAARQLVKNIRKQDAQIPLTLI-AAD 36
                   89***************999999999999.444 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00024
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsll 37 
                    v+++G+G+ g+ lA      ++g +v++++ s+s+l
     CTQ29505.1 144 VLIVGGGLIGCELAMDF--CRAGKAVTVVDNSASVL 177
                    89***************..89999999999999986 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 1.3e-05
  Lycopene_cycl  91 eellerlvengvkll.eakvesveeeeageslvvleggrkirarlvvdargl.aslkkarrlglQtfyGvevevdnppfdldkmvlMDf 177
                    ++l++rl e gv+l+ + + e  e+  +   +v l+  r i   +vv a gl ++ + ar+ glQ+ +G++v+++ +  d++   l D 
     CTQ29505.1 187 SRLQHRLTEMGVHLMlKTQLEGLEQTAD-GIRVSLDRQRAITVDAVVAAAGLhPETSLARHAGLQINRGIVVNSQLQTSDPAIYALGDC 274
                    6789999999998751666677777666.899*******************83455599******************999998888775 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.076        56      10      46 ..       5      45 ..       2     109 .. 0.72
   2 !   20.0   0.0   9.3e-07   0.00069       7      46 ..     141     192 ..     137     269 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.076
  NAD_binding_7 10 vlvvGgGevAarkvrklleagakv..tvvapevkeele..e 46
                   ++++G G  A + v+++ +++a++  t++a ++ +e +  +
     CTQ29505.1  5 IVIIGSGFAARQLVKNIRKQDAQIplTLIAADSMDEYNkpD 45
                   79*****************9999744779988633333443 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 9.3e-07
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvapev...keele............e 46 
                     k+vl+vGgG ++ + +  +++ag+ vtvv++     +                +
     CTQ29505.1 141 AKRVLIVGGGLIGCELAMDFCRAGKAVTVVDNSAsvlA---AlmppeassrlqhR 192
                    69****************************99953330...13333333333330 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.058        43     125     165 ..      74     110 ..      47     129 .. 0.78
   2 !    5.6   0.6    0.0072       5.4       2      36 ..     143     177 ..     142     181 .. 0.92
   3 !   11.1   0.0   0.00016      0.12     115     163 ..     189     236 ..     185     279 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.058
                  EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----S CS
  HI0933_like 125 klrletevksvekeedgkfrvktkseeeleadklvlAtGGl 165
                  +l  +t v++++  +++   vk  ++++++ dklvlAtG +
   CTQ29505.1  74 RLFPHTWVSDID--AEN-RLVKS-HDNQWRYDKLVLATGAT 110
                  555566667773..333.45666.899***********976 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0072
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36 
                  +v+++GgG  G   A+   ++gk V+++++  +++
   CTQ29505.1 143 RVLIVGGGLIGCELAMDFCRAGKAVTVVDNSASVL 177
                  699**************************998875 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00016
                  HHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 115 llkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  l+++l+e gv+l+l+t+++++e+++dg +rv+++ +++++ d++v A G
   CTQ29505.1 189 LQHRLTEMGVHLMLKTQLEGLEQTADG-IRVSLDRQRAITVDAVVAAAG 236
                  8899**********************9.*****************9987 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.35   2.6e+02       1      28 [.       6      32 ..       6      49 .. 0.77
   2 ?    5.3   0.0     0.023        17     130     155 ..      84     109 ..      57     110 .. 0.77
   3 ?    1.3   0.1       0.4     3e+02       2      36 ..     146     175 ..     145     194 .. 0.75
   4 !   11.5   0.3    0.0003      0.22     107     154 ..     189     236 ..     183     238 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.35
  NAD_binding_9  1 aivGaGprGlavlerLlarakkksplei 28
                   +i+G G+++  +++++ ++   + pl++
     CTQ29505.1  6 VIIGSGFAARQLVKNIRKQD-AQIPLTL 32
                   69*******99999998883.4444444 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.023
  NAD_binding_9 130 radgqavlladgaslaadaVvLAlGh 155
                     +++ ++++++++++++d++vLA+G 
     CTQ29505.1  84 IDAENRLVKSHDNQWRYDKLVLATGA 109
                    344456889999*************6 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.4
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdpsep 36 
                    ivG+G  G  ++  +++         +t++d+s +
     CTQ29505.1 146 IVGGGLIGCELAMDFCRAG-----KAVTVVDNSAS 175
                    9************999994.....66788887544 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.0003
  NAD_binding_9 107 llarlpegvtvevh.raevvdleeradgqavlladgaslaadaVvLAlG 154
                    l+ rl e + v+++ +++ + le++adg +v l++++ +++daVv A G
     CTQ29505.1 189 LQHRLTE-MGVHLMlKTQLEGLEQTADGIRVSLDRQRAITVDAVVAAAG 236
                    5555643.45555448999****************************99 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   4.5e-07   0.00034      11      50 ..     133     172 ..     123     174 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.5e-07
                 HHHHHHHT.SEEEEE--SHHHHHHHHHHHHHTTTEEEEEES CS
                 xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  11 dgqekLrd.skvllvGaGglGsellknLalsGvgkltlvDn 50 
                 + q +L+d ++vl+vG G +G+el++++ ++G + +t+vDn
  CTQ29505.1 133 AAQSQLHDaKRVLIVGGGLIGCELAMDFCRAG-KAVTVVDN 172
                 67889999899*********************.78999997 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0     0.007       5.2       1      59 [.       5      65 ..       5      67 .. 0.78
   2 !   11.6   0.0   0.00035      0.26       1      37 [.     144     180 ..     144     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.007
                EEEES-SHHHHHHHHHHHHTT..EEEEEEESSHHHHHHHHHTT.SEEEE.S-TTSHHHHHHTT CS
      TrkA_N  1 iiiiGlGrvGrslaeeLsegg..kdvvvidkdeerveelreeg.levvv.gdatdeevLeeag 59
                i+iiG G  +r+l+++++++   ++ ++i  d   ++e+ +    +v+  g+ +d+ +L++ag
  CTQ29505.1  5 IVIIGSGFAARQLVKNIRKQDaqIPLTLIAADS--MDEYNKPDlSHVISrGQKADDLTLQSAG 65
                89*****************55476688888875..6666555525565569999999999887 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00035
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHH CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveel 37 
                 ++i+G G +G +la  + ++gk v+v+d++ ++++ l
  CTQ29505.1 144 VLIVGGGLIGCELAMDFCRAGKAVTVVDNSASVLAAL 180
                 68*****************6668******99988766 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.4   1.8e+03       3      38 ..       6      41 ..       4      72 .. 0.65
   2 !   19.0   0.2   1.4e-06     0.001       2      85 ..     144     234 ..     143     237 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.4
                EEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHH CS
     3HCDH_N  3 aviGaGtmGagiaavfasagleVvlvdiseealeka 38
                 +iG+G   +++ + + +++ ++ l+ i+++++++ 
  CTQ29505.1  6 VIIGSGFAARQLVKNIRKQDAQIPLTLIAADSMDEY 41
                678888888887777777777777776666655544 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.4e-06
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHH.....HHHHHHHHCCTTTTSS-..HHHHCCCHHCEEEES-HHHHHC-SEEEE- CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekal.....ekieksleklvekgklk..eeeveaalarisfttdleeavdadlviEa 85 
                 v ++G G++G ++a+ f++ag  V++vd s++ l++ +     ++++++l ++  +  lk   e  e++++ i+++ d ++a+ +d v+ a
  CTQ29505.1 144 VLIVGGGLIGCELAMDFCRAGKAVTVVDNSASVLAALMppeasSRLQHRLTEMGVHLMLKtqLEGLEQTADGIRVSLDRQRAITVDAVVAA 234
                 789**************************88877754411000333333333322222223366888999999999999999999998865 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.4     3e-05     0.023       3      34 ..     143     174 ..     141     180 .. 0.92
   2 ?    3.7   0.1     0.041        31     108     165 ..     186     238 ..     173     254 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3e-05
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                     VlIVG+G+ G  la+  ++aG  v++v+  +
     CTQ29505.1 143 RVLIVGGGLIGCELAMDFCRAGKAVTVVDNSA 174
                    69**************************9876 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.041
                    HHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT CS
  FAD_binding_3 108 eriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgr 165
                       L ++++e g+ +  kt++e+leq+ +g++  +  ++      ++ + +v+a G +
     CTQ29505.1 186 SSRLQHRLTEMGVHLMLKTQLEGLEQTADGIRVSLDRQR-----AITVDAVVAAAGLH 238
                    5568889999********************988776664.....44444478888876 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.2     9e+02       1      49 [.       5      54 ..       5      71 .. 0.77
   2 ?   11.5   0.1   0.00022      0.17       1      34 [.     144     178 ..     144     183 .. 0.90
   3 ?   -0.6   0.0       1.3   9.4e+02      15      61 ..     191     235 ..     185     269 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.2
                EEEES-SHHHHHHHHHHHHHTHC..EEEE-SCHHHHHHHHHCEEEEETTCE CS
        ApbA  1 iailGaGaiGsllaakLakagad..vtlilrsrrlealkknGlrltsegge 49
                i+i+G+G   + l  ++ k+ a+   tli+ +  +++ +k +l+  +++g+
  CTQ29505.1  5 IVIIGSGFAARQLVKNIRKQDAQipLTLIAADS-MDEYNKPDLSHVISRGQ 54
                789999999999999997766664477777777.99999999888877755 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00022
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHH CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rle 34 
                 ++i+G G iG+ la    +ag  vt++++s+  l+
  CTQ29505.1 144 VLIVGGGLIGCELAMDFCRAGKAVTVVDNSAsVLA 178
                 68**************************9985555 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.3
                 HHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCH CS
        ApbA  15 akLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsae 61 
                 ++L++    v+l+l+++ +  +   +G+r++ ++ ++ + ++++++a+
  CTQ29505.1 191 HRLTE--MGVHLMLKTQlEGLEQTADGIRVSLDR-QRAITVDAVVAAA 235
                 44433..448888888844444667899999999.5555555554444 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.97   7.3e+02      31      56 ..       5      30 ..       4      57 .. 0.80
   2 ?   12.1   0.2   0.00012     0.091      27      67 ..     140     180 ..     126     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.97
                 EEEESTSHHHHHHHHHHHHTT-EEEE CS
  AlaDh_PNT_C 31 vlviGgGvaGlqAiatakglgakVtv 56
                 +++iG G a  q +++ ++ +a++ +
   CTQ29505.1  5 IVIIGSGFAARQLVKNIRKQDAQIPL 30
                 799******99999998888888765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00012
                  ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakglgakVtvlDvrparleql 67 
                  ++ +vl++GgG  G + +    + g  Vtv+D ++++l  l
   CTQ29505.1 140 DAKRVLIVGGGLIGCELAMDFCRAGKAVTVVDNSASVLAAL 180
                  5668*****************************99998776 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     7e-05     0.053       2      39 ..     143     180 ..     142     224 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7e-05
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHH CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDideekvdkl 39 
                     ++ ++G G +G   a+ + ++g+ v++vD++++  ++l
      CTQ29505.1 143 RVLIVGGGLIGCELAMDFCRAGKAVTVVDNSASVLAAL 180
                     899***************************99887776 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.8e-05     0.043     202     262 ..     179     237 ..      57     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.8e-05
                    CCEETTHTHHHHHHHHHTTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-H CS
  Amino_oxidase 202 lllprgGlsqlpealaeelrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvpl 262
                     l+p +  s+l ++l+e   g+ + l t +  +++ +dg++v l  ++ +++DaVv ++ l
     CTQ29505.1 179 ALMPPEASSRLQHRLTE--MGVHLMLKTQLEGLEQTADGIRVSLDRQRAITVDAVVAAAGL 237
                    4566888999*******..**************************************9987 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.6   2.7e+03       1       8 [.       7      14 ..       7      30 .. 0.71
   2 ?   12.1   0.0   0.00023      0.17       1      29 [.     146     174 ..     146     204 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.6
                   EE--SHHH CS
  NAD_binding_8  1 IvGaGlsG 8 
                   I+G+G+++
     CTQ29505.1  7 IIGSGFAA 14
                   89***987 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00023
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrd 29 
                    IvG+Gl G+ +A    +ag+ v++++++ 
     CTQ29505.1 146 IVGGGLIGCELAMDFCRAGKAVTVVDNSA 174
                    9*************************976 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.1   3.1e+03     131     150 ..      90     109 ..      75     116 .. 0.76
   2 ?   11.6   0.2   0.00014       0.1       2      37 ..     144     179 ..     143     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.1
                 EEETTS-EEEECEEEE--TT CS
        GIDA 131 vvtedgetikakavviatGt 150
                 +v++++++ + ++ v+atG+
  CTQ29505.1  90 LVKSHDNQWRYDKLVLATGA 109
                 56677888888999999997 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00014
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT- CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLithkldtiae 37 
                 v ++GgG+ Gce A+   r+G  v+ + ++ + +a 
  CTQ29505.1 144 VLIVGGGLIGCELAMDFCRAGKAVTVVDNSASVLAA 179
                 89***********************99666655554 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.29   2.1e+02      15      37 ..       5      27 ..       1      33 [. 0.87
   2 ?    9.4   0.0    0.0014         1       5      47 ..     136     175 ..     132     201 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.29
                  EEEES-SHHHHHHHHHHHCCT-C CS
  Shikimate_DH 15 vlliGaGemaelvakhLlakgvk 37
                  +++iG G  a++++k++ ++ ++
    CTQ29505.1  5 IVIIGSGFAARQLVKNIRKQDAQ 27
                  89**************9988765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0014
                   HHHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHH CS
  Shikimate_DH   5 kkleslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtle 47 
                   ++l  ++ k+vl++G G ++ ++a  ++++g   v+v+  + +
    CTQ29505.1 136 SQL--HDAKRVLIVGGGLIGCELAMDFCRAGKA-VTVVDNSAS 175
                   444..46799******************99977.888876655 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.045        34       2      24 ..       5      28 ..       4      56 .. 0.82
   2 ?    6.8   0.1     0.013       9.9       2      41 ..     144     179 ..     143     235 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.045
                   EEEETTSHHHHHHHHHHHHTTS.- CS
  F420_oxidored  2 igiiGaGnmgealasgllaaga.q 24
                   i iiG+G  ++ l++++ +++a  
     CTQ29505.1  5 IVIIGSGFAARQLVKNIRKQDAqI 28
                   78*****************99532 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.013
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHH CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaee 41 
                    + i+G+G +g  la  + +ag   + ++v+ +++ + +++
     CTQ29505.1 144 VLIVGGGLIGCELAMDFCRAG---KAVTVV-DNSASVLAA 179
                    6689*****************...999988.444333333 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00024      0.18       1     108 [.     142     258 ..     142     260 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT..TSE..EEEEE-TTT.SHHHHHHHHHHHHHHH.....SSESEEEE---SS- CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee..gak..alaiqvDvt.dreevealvekavkkl.....gkldvLvnNAGitg 89 
                 k vl++G++  IG ++a  + ++G  v+vvd+s++ l++++    +   + +   + +++ ++ + e +e++ + ++  l      ++d++v+ AG++ 
  CTQ29505.1 142 KRVLIVGGG-LIGCELAMDFCRAGKAVTVVDNSASVLAALMPPEASSrlQHRltEMGVHLMLKtQLEGLEQTADGIRVSLdrqraITVDAVVAAAGLHP 239
                 568999998.6**********************999987653222222333311222222222355666666666665554434467999999999988 PP

                 -SSGGGCSHHHHHHHHHHH CS
   adh_short  90 sgpfselseeewervievN 108
                  ++ +++   +++r i vN
  CTQ29505.1 240 ETSLARHAGLQINRGIVVN 258
                 8887777777777777666 PP

>> UAF_Rrn10  UAF complex subunit Rrn10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00027      0.21      22      86 ..      13      79 ..       8      91 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00027
   UAF_Rrn10 22 sadevlae..kidfavPiPfktreeldadvekdrnegvfegniiPdldlrvvqdyatelllakykkl 86
                 a++++++  k d  +P+ + + + +d   ++d    +  g+   dl l++  ++a ++ l  ++++
  CTQ29505.1 13 AARQLVKNirKQDAQIPLTLIAADSMDEYNKPDLSHVISRGQKADDLTLQSAGEFAEQYTLRLFPHT 79
                67788774338899***********************************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2668.00
//
Query:       CTQ29506.1  [L=337]
Description: High-affinity nickel transport protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-88  296.8  18.1      2e-88  296.4  18.1    1.1  1  NicO      High-affinity nickel-transport protein


Domain annotation for each model (and alignments):
>> NicO  High-affinity nickel-transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.4  18.1   1.1e-92     2e-88       2     282 ..      41     325 ..      40     326 .. 0.98

  Alignments for each domain:
  == domain 1  score: 296.4 bits;  conditional E-value: 1.1e-92
        NicO   2 lvliglsflyGvrHAvdagHgkai...irklmqagktalkrGillslgsslvvvlvavllvvaavlvlr.ltslsetgaaigtei.asFllvilllnll 95 
                 +++ +l++ yG+rHAvda+H++ai   +rk+mq+g+++ ++G ++slg+s++vvl++ +++ +a++++  ++ l++tg++igt + a+Fll+++++nl+
  CTQ29506.1  41 MAASLLAWGYGLRHAVDADHIAAIdnvTRKMMQQGRRPFAVGAWFSLGHSSIVVLASAAIAATATAFSTqMSWLHDTGSVIGTAVsALFLLAMAFINLV 139
                 67889************************************************************99999***************************** PP

        NicO  96 llrklrklfrklerlgrapaaeleaalakrgllsrilgklfrlitkswhmypvgflfglGfdtateiallaidpsealkgdsfdsilalpalfavGlrl 194
                 +lr+++++fr+ +r     ++  +++ ++ g +s  +gk+frli++sw+my vgflfglGfdtatei +l+i+++ a +g+s++si+++palfa G++l
  CTQ29506.1 140 ILRSVWRSFRAWKR----GEPVSDEIVSGGGVMSWLFGKTFRLISRSWQMYLVGFLFGLGFDTATEIGVLGISAAGASSGISVWSIMVFPALFASGMAL 234
                 *********99988....677889999999********************************************************************* PP

        NicO 195 cdgadivlmfaalnwaflg.grklvyamsitgtsitvalliglivtlklvakkfalsgslwaaiisle..leivGavlvllfallllgasl 282
                 +d++d+vlm+ a++waf++  rkl+y+m+itgts++val+ig++++l+l+ +kfalsg +w+++++l+  l  +G+v+v+lf++++  ++l
  CTQ29506.1 235 VDTLDNVLMVGAYGWAFSKpQRKLYYNMTITGTSVVVALFIGGLEALGLLMDKFALSGGIWRWVGALNdnLGDAGFVVVGLFVACWALSVL 325
                 ********************************************************************99****************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       909  (0.0507); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2503.36
//
Query:       CTQ29507.1  [L=744]
Description: carbamoyl phosphate phosphatase and maturation protein for (NiFe) hydrogenases [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-45  153.5   0.0    6.3e-45  152.9   0.0    1.3  1  Sua5_yciO_yrdC   Telomere recombination
    3.6e-32  109.8  18.4    2.3e-16   59.3   5.5    3.1  3  zf-HYPF          HypF finger
    8.5e-30  103.5   0.1    1.5e-29  102.6   0.1    1.4  1  HypF_C           HypF Kae1-like domain
    2.5e-10   40.6   0.0    4.1e-10   39.9   0.0    1.4  1  Acylphosphatase  Acylphosphatase
     0.0059   16.6   4.8       0.25   11.4   0.4    2.8  2  DZR              Double zinc ribbon
  ------ inclusion threshold ------
        2.9    8.1  12.0        8.4    6.6   2.7    3.9  4  Zn-ribbon_8      Zinc ribbon domain


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.0   2.1e-48   6.3e-45       3     178 ..     205     368 ..     203     370 .. 0.96

  Alignments for each domain:
  == domain 1  score: 152.9 bits;  conditional E-value: 2.1e-48
                     HHTTSEEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-TC--HHHHHHHHCT-SSSCEEEEE..E-TS-HHHHTTT CS
  Sua5_yciO_yrdC   3 lrkGgivaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklaeseveeealkllerfwPGpitlllkrskeklpkevapgl 97 
                     l +G ivai+++++++Lacda n++av++lr++K+rp +kplav+++  + l + a+     +++ ++++    pi+l+ k++ + l +e+apgl
      CTQ29507.1 205 LAAGDIVAIKGIGGFHLACDAGNPAAVATLRARKHRP-AKPLAVMLPTATGLPAAAA-----ALMGSPAA----PIVLIAKAQVSGLCDEIAPGL 289
                     889**********************************.**************99886.....9*******....*******98777********* PP

                     TEEEEEE-SSHHHHHHHHHCTS-EEEEES-STTS-S-SSHHHHHHHC-TTSECB-SS-.--SSS---EEEETTSSTSSECEX CS
  Sua5_yciO_yrdC  98 ktvGvrlPdtplarlLlealgeplvaTSanlsgepsitdaeeveeelgeivdlildgg.eiavgvdstVvdltegkpkilRr 178
                      +vGv+lP++pl +lLl+ l +p+v+TS+nlsg+p++++++++ ++l++i+d +l ++ +i ++ d++ v+ ++   ++lRr
      CTQ29507.1 290 AEVGVMLPSNPLQHLLLQGLARPIVMTSGNLSGRPPALSNAQALNDLADIADGFLLHNrDIVQRMDDSLVRSSG---EMLRR 368
                     ***********************************************************************886...56665 PP

>> zf-HYPF  HypF finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   5.5   7.7e-20   2.3e-16       1      34 []     103     136 ..     103     136 .. 0.98
   2 !   55.6   4.2   1.1e-18   3.2e-15       1      33 [.     153     185 ..     153     186 .. 0.97
   3 ?   -1.3   0.0      0.64   1.9e+03       4      14 ..     477     487 ..     476     487 .. 0.85

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 7.7e-20
                 --HHHHHHHC-TTSTTTT-TT---TTTS--EEEE CS
     zf-HYPF   1 lCedClrEykdpldRRfhaqfisCtnCGPrlsli 34 
                 +C++Cl+E++dp  RR++++fi+Ct+CGPrl++i
  CTQ29507.1 103 TCPACLAEMNDPRARRYRYPFINCTHCGPRLTII 136
                 6*******************************97 PP

  == domain 2  score: 55.6 bits;  conditional E-value: 1.1e-18
                 --HHHHHHHC-TTSTTTT-TT---TTTS--EEE CS
     zf-HYPF   1 lCedClrEykdpldRRfhaqfisCtnCGPrlsl 33 
                 lC  C++E++dp+dRRfhaq+++C++CGPrl +
  CTQ29507.1 153 LCSPCEAEFRDPADRRFHAQPVACPDCGPRLEW 185
                 7*****************************986 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.64
                 HHHHHHC-TTS CS
     zf-HYPF   4 dClrEykdpld 14 
                 +Cl+E++ pld
  CTQ29507.1 477 ACLAEHRWPLD 487
                 7*****98876 PP

>> HypF_C  HypF Kae1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.1   5.2e-33   1.5e-29       5     102 .]     388     481 ..     385     481 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 5.2e-33
      HypF_C   5 evLAlGaelkntfalakggqallsqhlGdlenletleayeealeeleklleikpevivcDlhpdylstklaeelaekeklelievqHHhAHllavlae 102
                 ++LAlGa++kntf+la+g++a+lsqh+Gdl +    +++++al+ +++++ + p+ +v+D+hp+y st++a++l     l+l +v HHhAH++a+lae
  CTQ29507.1 388 PLLALGADMKNTFCLARGSEAVLSQHFGDLGEEGVEQQWRSALQLMQSIYAFVPQRVVVDAHPGYRSTQWAASL----PLPLETVLHHHAHAAACLAE 481
                 78************************************************************************....9******************8 PP

>> Acylphosphatase  Acylphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.4e-13   4.1e-10       1      85 []       4      85 ..       4      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.4e-13
  Acylphosphatase  1 vrllvtGrVQgvgFRkfvrrlAkelglkGyvrNlsdgsVeivaegeeekvekfleelksgppk.arvdeveveeleeeeefkdFei 85
                     v+++++G+VQgvgFR+fv +lA+     G v+N+ dg V + + g ++    f ++l    p+ ar+d+    ++  + + +dF+i
       CTQ29507.1  4 VQIRIRGKVQGVGFRPFVWQLARAQARCGDVCNDGDG-VLVRLVGGDD---GFTAALADHCPPlARIDSTACIPYRWAATPQDFTI 85
                     5899*********************************.9999999884...5666666655555*****99999988888888887 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.4   8.3e-05      0.25       6      36 ..      95     131 ..      94     138 .. 0.89
   2 !    6.1   0.4    0.0038        12      14      36 ..     153     181 ..     146     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.3e-05
         DZR   6 eelppdarfCseCgtklkavaa......edrCpsCge 36 
                 +++ pda +C++C ++++ + a       ++C +Cg 
  CTQ29507.1  95 TQIVPDAATCPACLAEMNDPRArryrypFINCTHCGP 131
                 57889************998889****99******96 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0038
         DZR  14 fCseCgtklkavaa......edrCpsCge 36 
                  Cs C ++ + +a+      + +Cp Cg 
  CTQ29507.1 153 LCSPCEAEFRDPADrrfhaqPVACPDCGP 181
                 59999999987777899999999999985 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.084   2.5e+02      25      33 ..     100     108 ..      91     112 .. 0.69
   2 ?    3.3   0.0      0.03        88       7      27 ..     122     146 ..     118     150 .. 0.77
   3 ?    6.6   2.7    0.0028       8.4       8      34 ..     154     181 ..     152     184 .. 0.69
   4 ?   -2.7   0.1       2.3   6.9e+03      10      18 ..     588     596 ..     587     604 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.084
  Zn-ribbon_8  25 pltaCPeCg 33 
                  +  +CP+C 
   CTQ29507.1 100 DAATCPACL 108
                  3455****5 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.03
  Zn-ribbon_8   7 r...CeeCghefevlqsis.daplt 27 
                      C+ Cg + ++++++  d+p t
   CTQ29507.1 122 PfinCTHCGPRLTIIRAMPyDRPFT 146
                  3556*****9999999998888765 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0028
  Zn-ribbon_8   8 CeeCghefe.vlqsisdapltaCPeCgs 34 
                  C  C  ef  +  + + a ++aCP+Cg 
   CTQ29507.1 154 CSPCEAEFRdPADRRFHAQPVACPDCGP 181
                  9999999996333333444556****95 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 2.3
  Zn-ribbon_8  10 eCghefevl 18 
                  +Cg+ f+++
   CTQ29507.1 588 SCGRLFDAV 596
                  799999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.22s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 5300.22
//
Query:       CTQ29508.1  [L=175]
Description: formate dehydrogenase-H, (4Fe-4S) ferredoxin subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-15   54.0  37.8    4.8e-07   29.6   2.6    4.7  4  Fer4_6    4Fe-4S binding domain
    4.3e-14   51.6  42.2    6.6e-08   32.1   3.2    5.8  6  Fer4      4Fe-4S binding domain
    3.2e-12   46.8  34.0    9.3e-08   32.5  10.1    2.9  2  Fer4_7    4Fe-4S dicluster domain
      8e-12   45.1  27.5    3.4e-06   27.1   8.3    3.0  2  Fer4_9    4Fe-4S dicluster domain
      1e-10   41.0  35.8      3e-05   23.9   2.3    4.4  4  Fer4_2    4Fe-4S binding domain
    1.1e-10   41.5  15.2    5.4e-08   32.9   7.0    2.9  3  Fer4_11   4Fe-4S dicluster domain
    8.2e-09   36.3  28.5     0.0084   17.0   4.3    4.5  4  Fer4_16   4Fe-4S double cluster binding domain
    2.3e-08   34.0  36.9    3.2e-06   27.2  10.1    3.8  4  Fer4_10   4Fe-4S dicluster domain
    2.2e-07   31.3  45.1     0.0056   17.5   6.2    4.6  4  Fer4_3    4Fe-4S binding domain
    6.8e-06   26.4  32.1     0.0045   17.4   9.3    2.8  2  Fer4_8    4Fe-4S dicluster domain
    9.7e-06   25.6  36.5     0.0067   16.5  12.8    3.7  2  Fer4_21   4Fe-4S dicluster domain
    8.5e-05   22.8   4.2    8.5e-05   22.8   4.2    5.4  4  Fer4_4    4Fe-4S binding domain
  ------ inclusion threshold ------
      0.021   15.4   2.0      0.021   15.4   2.0    4.4  6  Fer4_17   4Fe-4S dicluster domain
       0.47   10.6  15.1       0.58   10.3   4.3    2.7  2  ETF_QO    Electron transfer flavoprotein-ubiquinone oxidoredu
        3.1    7.6  37.6       0.45   10.3   4.0    4.1  4  Fer4_20   Dihydroprymidine dehydrogenase domain II, 4Fe-4S cl


Domain annotation for each model (and alignments):
>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   3.2   4.3e-07   0.00051       2      19 ..       5      22 ..       4      26 .. 0.90
   2 !   11.0   4.9   0.00031      0.37       8      24 .]      57      75 ..      54      75 .. 0.92
   3 !   29.6   2.6     4e-10   4.8e-07       1      23 [.      81     103 ..      81     104 .. 0.94
   4 !   11.1   3.6   0.00027      0.32       6      24 .]     128     152 ..     125     152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.3e-07
      Fer4_6  2 veidpdkCigCgdCvrvC 19
                +  d++kCigC+ C+++C
  CTQ29508.1  5 IIADASKCIGCRTCEVAC 22
                5679************** PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00031
      Fer4_6  8 kCigCgd..CvrvCPegai 24
                +C +C+d  C++vCP gai
  CTQ29508.1 57 ACRQCEDapCANVCPNGAI 75
                8****999********998 PP

  == domain 3  score: 29.6 bits;  conditional E-value: 4e-10
      Fer4_6   1 vveidpdkCigCgdCvrvCPega 23 
                 +v++ +++CigC  Cv++CP+ga
  CTQ29508.1  81 FVHVMQERCIGCKTCVVACPYGA 103
                 6899*****************98 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 0.00027
      Fer4_6   6 pdkCigCgd......CvrvCPegai 24 
                 ++kC+ C        C+ vCP+ a+
  CTQ29508.1 128 ANKCDLCFHresgpaCMEVCPTHAL 152
                 699**998889999********996 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   5.3   5.7e-06    0.0068       3      18 ..       7      22 ..       5      22 .. 0.91
   2 ?    1.9   0.2      0.19   2.3e+02       9      17 ..      56      64 ..      56      64 .. 0.85
   3 !   13.0   0.8   5.8e-05      0.07      14      24 .]      66      76 ..      66      76 .. 0.95
   4 !   32.1   3.2   5.5e-11   6.6e-08       2      23 ..      83     104 ..      82     105 .. 0.91
   5 ?   -1.2   0.4       1.8   2.1e+03       6      11 ..     129     134 ..     127     134 .. 0.74
   6 !   12.5   0.5     8e-05     0.096      13      23 ..     142     152 ..     142     153 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.7e-06
                EETTTSSS-THHHHHS CS
        Fer4  3 ideekCigCGaCvevC 18
                 d +kCigC +C+ +C
  CTQ29508.1  7 ADASKCIGCRTCEVAC 22
                599************* PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.19
                SS-THHHHH CS
        Fer4  9 igCGaCvev 17
                ++C +C+++
  CTQ29508.1 56 TACRQCEDA 64
                58****987 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 5.8e-05
                HHHHSTTTEEE CS
        Fer4 14 CvevCPvgAIt 24
                C++vCP+gAI+
  CTQ29508.1 66 CANVCPNGAIS 76
                *********96 PP

  == domain 4  score: 32.1 bits;  conditional E-value: 5.5e-11
                 EEETTTSSS-THHHHHSTTTEE CS
        Fer4   2 videekCigCGaCvevCPvgAI 23 
                  + +e+CigC++Cv +CP+gA 
  CTQ29508.1  83 HVMQERCIGCKTCVVACPYGAM 104
                 6889*****************7 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 1.8
                 TTSSS- CS
        Fer4   6 ekCigC 11 
                 +kC  C
  CTQ29508.1 129 NKCDLC 134
                 688887 PP

  == domain 6  score: 12.5 bits;  conditional E-value: 8e-05
                 HHHHHSTTTEE CS
        Fer4  13 aCvevCPvgAI 23 
                 aC+evCP+ A+
  CTQ29508.1 142 ACMEVCPTHAL 152
                 7********97 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8  15.2   7.4e-07   0.00088       1      52 []      11      74 ..      11      74 .. 0.72
   2 !   32.5  10.1   7.8e-11   9.3e-08       1      52 []      88     151 ..      88     151 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 7.4e-07
      Fer4_7  1 rCigCgaCvaaC......pvkaieldeeenekgtekv...eid.pekClgCga..CvavCPtga 52
                +CigC+ C++aC       +++ +l++++ +++++ +   +++ ++ C +C+   C++vCP ga
  CTQ29508.1 11 KCIGCRTCEVACvvshqeHQDCASLTPHTFQPRIHVIkgvNVStATACRQCEDapCANVCPNGA 74
                7***********6666655666667776666666555222443267899999899******997 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 7.8e-11
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenek..gt......ekveidpekClgC......gaCvavCPtga 52 
                 rCigC+ Cv+aCp++a+e+  + + +  g       e  + +++kC  C       aC++vCPt a
  CTQ29508.1  88 RCIGCKTCVVACPYGAMEVVVRPVIRhsGAglnvvaE--KAEANKCDLCfhresgPACMEVCPTHA 151
                 8*****************8855444433434433222..334556666644333346******976 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2  10.6   4.8e-08   5.7e-05       1      51 []      11      75 ..      11      75 .. 0.70
   2 !   27.1   8.3   2.8e-09   3.4e-06       1      50 [.      88     151 ..      88     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.8e-08
      Fer4_9  1 kCtgCgaCveaC..............pagvvvedaaerkarlraase...........eaCigCga..CveaCpkgai 51
                kC+gC++C+ aC              p++   +                         +aC +C++  C+++Cp+gai
  CTQ29508.1 11 KCIGCRTCEVACvvshqehqdcasltPHTFQPR-------------IhvikgvnvstaTACRQCEDapCANVCPNGAI 75
                7***********776666555555543333333.............13344455555578***************997 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 2.8e-09
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase.........eaCigCga......CveaCpkga 50 
                 +C+gC++Cv aCp+g+++    + ++   a +          ++C  C        C+e+Cp++a
  CTQ29508.1  88 RCIGCKTCVVACPYGAMEVVVRPVIRHSGA-GLnvvaekaeaNKCDLCFHresgpaCMEVCPTHA 151
                 6**************998777666655543.335888999999******99***********997 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   3.3     5e-06    0.0059       3      20 ..       5      22 ..       3      23 .. 0.91
   2 !    8.7   5.3    0.0016       1.9       9      22 .]      57      72 ..      51      72 .. 0.90
   3 !   23.9   2.3   2.5e-08     3e-05       3      22 .]      82     101 ..      80     101 .. 0.89
   4 !    9.3   1.9     0.001       1.2       5      22 .]     126     149 ..     124     149 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5e-06
      Fer4_2  3 vvvdtdrCigCgaCvsaC 20
                + +d+ +CigC++C  aC
  CTQ29508.1  5 IIADASKCIGCRTCEVAC 22
                67899***********9* PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0016
      Fer4_2  9 rCigCg..aCvsaCPa 22
                +C +C+  +C ++CP+
  CTQ29508.1 57 ACRQCEdaPCANVCPN 72
                7****899*******5 PP

  == domain 3  score: 23.9 bits;  conditional E-value: 2.5e-08
      Fer4_2   3 vvvdtdrCigCgaCvsaCPa 22 
                 v+v  +rCigC++Cv aCP+
  CTQ29508.1  82 VHVMQERCIGCKTCVVACPY 101
                 577789*************5 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.001
      Fer4_2   5 vdtdrCigC.....g.aCvsaCPa 22 
                 +++++C  C     g aC  +CP+
  CTQ29508.1 126 AEANKCDLCfhresGpACMEVCPT 149
                 56789****8765449*******7 PP

>> Fer4_11  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.5       2.3   2.8e+03      70      76 ..      11      17 ..       5      38 .. 0.59
   2 !   32.9   7.0   4.5e-11   5.4e-08       7      59 ..      55     104 ..      51     110 .. 0.93
   3 !   20.3   1.1   3.6e-07   0.00043      64      99 ..     124     156 ..     118     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.3
     Fer4_11 70 kCdmcld 76
                kC +c  
  CTQ29508.1 11 KCIGCRT 17
                5555543 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 4.5e-11
     Fer4_11   7 peqCrhCleppCvasapseaivkdeetGaVlldektkkeevrevveacPykiv 59 
                 ++ Cr+C+++pC++++p++ai +d+  G V + ++++  +++++v acPy ++
  CTQ29508.1  55 ATACRQCEDAPCANVCPNGAISRDK--GFVHVMQERCI-GCKTCVVACPYGAM 104
                 678*********************9..**********7.***********876 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 3.6e-07
     Fer4_11  64 etgkvekCdmcldrveaGllpacvescptgalnfgd 99 
                 e+ +++kCd+c++r +    pac+e+cpt+al + d
  CTQ29508.1 124 EKAEANKCDLCFHRES---GPACMEVCPTHALVCVD 156
                 667899********99...7**********998776 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   2.2    0.0066       7.8      53      65 ..      11      23 ..       4      41 .. 0.72
   2 !   15.3   1.6   2.4e-05     0.029       2      21 ..      58      79 ..      57      87 .. 0.87
   3 !   17.0   4.3     7e-06    0.0084       1      26 [.      88     113 ..      88     137 .. 0.79
   4 !   11.2   0.2   0.00046      0.54       7      28 ..     142     163 ..     138     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0066
     Fer4_16 53 aitgCdiCqdvCP 65
                +++gC++C+ +C+
  CTQ29508.1 11 KCIGCRTCEVACV 23
                4555555555554 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.4e-05
     Fer4_16  2 CgtCgk..CaevCPtnaikekk 21
                C +C+   Ca+vCP +ai+ +k
  CTQ29508.1 58 CRQCEDapCANVCPNGAISRDK 79
                ****9999**********9984 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 7e-06
     Fer4_16   1 rCgtCgkCaevCPtnaikekkekeie 26 
                 rC++C+ C+ +CP +a++   +++i+
  CTQ29508.1  88 RCIGCKTCVVACPYGAMEVVVRPVIR 113
                 6****************998777765 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 0.00046
     Fer4_16   7 kCaevCPtnaikekkekeiear 28 
                 +C+evCPt+a+    ++++e+ 
  CTQ29508.1 142 ACMEVCPTHALVCVDRNKLEQM 163
                 7**********98766666644 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5  17.8   0.00085         1       2      56 .]       5      71 ..       4      71 .. 0.85
   2 !   16.8  15.5   4.5e-06    0.0053       5      56 .]      54     100 ..      50     100 .. 0.83
   3 !   27.2  10.1   2.7e-09   3.2e-06       4      56 .]      84     148 ..      81     148 .. 0.72
   4 !    8.5   4.0    0.0017       2.1       7      24 ..     129     154 ..     125     173 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00085
     Fer4_10  2 vvidddtCirCgkCvkaCPadl...........tsvgakgeaseeeavrk.kvekCtgcg..aCveaCP 56
                ++ d+++Ci+C++C  aC   +           t +  ++ +  ++ v++    +C +c+   C+ +CP
  CTQ29508.1  5 IIADASKCIGCRTCEVAC--VVshqehqdcaslTPHTFQPRIHVIKGVNVsTATACRQCEdaPCANVCP 71
                6789**************..4567*********7777777777777776669*******777******9 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 4.5e-06
     Fer4_10   5 dddtCirCg..kCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                  +  C +C+   C ++CP         ++  +++ v++  e+C+gc  Cv aCP
  CTQ29508.1  54 TATACRQCEdaPCANVCPN-------GAISRDKGFVHVMQERCIGCKTCVVACP 100
                 5678*****999*******.......55555556666699*************9 PP

  == domain 3  score: 27.2 bits;  conditional E-value: 2.7e-09
     Fer4_10   4 idddtCirCgkCvkaCPadl.....tsvgakgeaseeeavrk.kvekCtgcg......aCveaCP 56 
                 + +++Ci+C++Cv aCP+ +     + v     a  + + +k    kC+ c+      aC+e+CP
  CTQ29508.1  84 VMQERCIGCKTCVVACPYGAmevvvRPVIRHSGAGLNVVAEKaEANKCDLCFhresgpACMEVCP 148
                 6789**************99888873333333333333444447799****6566678******9 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0017
     Fer4_10   7 dtCirCg......kCvkaCPadl..t 24 
                 ++C  C       +C+++CP+++   
  CTQ29508.1 129 NKCDLCFhresgpACMEVCPTHAlvC 154
                 45544433334458888888877752 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   5.8    0.0087        10       1      11 [.      12      22 ..      12      25 .. 0.94
   2 !    9.1   6.0    0.0024       2.8       1      15 []      58      74 ..      58      74 .. 0.90
   3 !   17.5   6.2   4.7e-06    0.0056       1      15 []      89     103 ..      89     103 .. 0.98
   4 !   15.8   3.3   1.7e-05      0.02       1      15 []     131     151 ..     131     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0087
      Fer4_3  1 CtgCgaCvevC 11
                C+gC++C+++C
  CTQ29508.1 12 CIGCRTCEVAC 22
                *********** PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0024
      Fer4_3  1 CtgCg..aCvevCPvgA 15
                C +C+  +C +vCP+gA
  CTQ29508.1 58 CRQCEdaPCANVCPNGA 74
                88998778********9 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 4.7e-06
      Fer4_3   1 CtgCgaCvevCPvgA 15 
                 C+gC +Cv++CP+gA
  CTQ29508.1  89 CIGCKTCVVACPYGA 103
                 **************9 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 1.7e-05
      Fer4_3   1 CtgCg......aCvevCPvgA 15 
                 C+ C       aC+evCP++A
  CTQ29508.1 131 CDLCFhresgpACMEVCPTHA 151
                 9***77788999*******98 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6  14.3   2.8e-05     0.033       2      64 ..       9      73 ..       8      74 .. 0.71
   2 !   17.4   9.3   3.7e-06    0.0045       3      64 ..      87     150 ..      85     151 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.8e-05
      Fer4_8  2 lekCieCgaCqsaCpvlrr.......tkkhlldargeaaedvqeeqvleeeealwsCttcga..CtevCpvg 64
                ++kCi+C  C+ aC v ++          h +++r  +++  ++        ++ +C +c+   C++vCp+g
  CTQ29508.1  9 ASKCIGCRTCEVACVVSHQehqdcasLTPHTFQPRIHVIK-GVNV------STATACRQCEDapCANVCPNG 73
                79************88887444444333555555555555.3333......4489******999******87 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 3.7e-06
      Fer4_8   3 ekCieCgaCqsaCp......vlrrtkkhlldargeaaedvqeeqvleeeealwsCttcga......CtevCpvg 64 
                 e+Ci+C  C  aCp      v+r   +h+    + +ae     ++      +++C  c +      C evCp++
  CTQ29508.1  87 ERCIGCKTCVVACPygamevVVRPVIRHSGAGLNVVAE-----KA-----EANKCDLCFHresgpaCMEVCPTH 150
                 79************664333333333333333333333.....33.....3566777766666999******97 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4  15.8   0.00048      0.57       4      58 ..       8      76 ..       5      77 .. 0.64
   2 !   16.5  12.8   5.6e-06    0.0067       3      53 ..      84     149 ..      82     157 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00048
     Fer4_21  4 dedkCigCgkCliaCedtshq....aieidaktvl.........kvv.edeCvGCn..lCssvCPvedcie 58
                d +kCigC  C +aC   shq    + +++++t           +v  +  C  C+   C++vCP +++i+
  CTQ29508.1  8 DASKCIGCRTCEVACVV-SHQehqdCASLTPHTFQprihvikgvNVStATACRQCEdaPCANVCP-NGAIS 76
                789************85.443111255555554323333455545533789999973369*****.68885 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 5.6e-06
     Fer4_21   3 idedkCigCgkCliaCedtshqai.......eidaktvlkvv.....edeCvGC......nlCssvCPv 53 
                 + +++CigC+ C++aC+ ++++ +       +  + + l+vv     +++C  C        C++vCP+
  CTQ29508.1  84 VMQERCIGCKTCVVACPYGAMEVVvrpvirhS--G-AGLNVVaekaeANKCDLCfhresgPACMEVCPT 149
                 6789******************9977654321..2.222333121113444444222222346778886 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   5.4   0.00041      0.49       2      14 ..      10      22 ..       9      23 .. 0.93
   2 ?    4.5   4.5     0.053        63       6      15 ..      57      71 ..      53      77 .. 0.62
   3 !   22.8   4.2   7.1e-08   8.5e-05       1      17 []      86     102 ..      86     102 .. 0.95
   4 ?    0.2   4.1       1.2   1.5e+03       8      16 ..     141     149 ..     127     150 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00041
      Fer4_4  2 erCigCgsCvaaC 14
                ++CigC+ C+ aC
  CTQ29508.1 10 SKCIGCRTCEVAC 22
                68*********** PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.053
      Fer4_4  6 gCgsCvaa.....CP 15
                 C++C++a     CP
  CTQ29508.1 57 ACRQCEDApcanvCP 71
                577755554222277 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 7.1e-08
      Fer4_4   1 qerCigCgsCvaaCPqg 17 
                 qerCigC+ Cv aCP+g
  CTQ29508.1  86 QERCIGCKTCVVACPYG 102
                 79*************86 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.2
      Fer4_4   8 gsCvaaCPq 16 
                 ++C+ +CP+
  CTQ29508.1 141 PACMEVCPT 149
                 36*****96 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.7    0.0014       1.7      43      56 ..       9      22 ..       4      27 .. 0.86
   2 ?    6.3  15.5     0.012        14       1      59 [.      11      73 ..      11      75 .. 0.67
   3 ?    6.7   2.7    0.0088        11       1      19 [.      57      77 ..      57      87 .. 0.83
   4 ?   15.4   2.0   1.7e-05     0.021      44      59 ..      87     102 ..      74     104 .. 0.84
   5 ?    2.2   1.6      0.23   2.8e+02      51      59 ..     142     150 ..     113     152 .. 0.59
   6 ?    2.0   3.5      0.27   3.2e+02       7      24 ..     142     164 ..     130     174 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0014
     Fer4_17 43 aslCieCgeCerkC 56
                as+Ci+C+ Ce +C
  CTQ29508.1  9 ASKCIGCRTCEVAC 22
                78999999999999 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.012
     Fer4_17  1 rCiqCgyClpeCps.yeaydnepkkllraakl..glleeaekeekaslCieCge..CerkCPqg 59
                +Ci+C+ C+ +C   +++++++   +   +++  + ++++ + ++a  C +C+   C+ +CP+g
  CTQ29508.1 11 KCIGCRTCEVACVVsHQEHQDCASLTPHTFQPriHVIKGV-NVSTATACRQCEDapCANVCPNG 73
                6***********9625556666555555555533444443.347888888886555******97 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0088
     Fer4_17  1 rCiqCgy..ClpeCpsyeayd 19
                +C+qC+   C+++Cp +++ +
  CTQ29508.1 57 ACRQCEDapCANVCPNGAISR 77
                5*****889******987755 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 1.7e-05
     Fer4_17  44 slCieCgeCerkCPqg 59 
                 ++Ci+C+ C+ +CP+g
  CTQ29508.1  87 ERCIGCKTCVVACPYG 102
                 79************97 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.23
     Fer4_17  51 eCerkCPqg 59 
                  C ++CP +
  CTQ29508.1 142 ACMEVCPTH 150
                 355555544 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.27
     Fer4_17   7 yClpeCpsyea.....ydnepkk 24 
                 +C+++Cp+++      ++ e+++
  CTQ29508.1 142 ACMEVCPTHALvcvdrNKLEQMN 164
                 5999**98766444334444444 PP

>> ETF_QO  Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   2.3     0.011        13      70      84 ..       7      21 ..       1      32 [. 0.79
   2 ?   10.3   4.3   0.00048      0.58      14      92 ..      34     106 ..      23     112 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.011
                E-CCC--S--HHHHH CS
      ETF_QO 70 inaqnCvhCktCdik 84
                 +a+ C+ C+tC++ 
  CTQ29508.1  7 ADASKCIGCRTCEVA 21
                47899*******986 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00048
                 TT-B--SSS--SEEESSTTHHH.HTHHHHHS-THHHH-TTS-EEEEETTTTSSEEEEE-CCC--S--HHHHH-TT--EEE CS
      ETF_QO  14 sgtnheedqpvhLklkdaevav.kvnlekyagpeqryCPagvyeivedeeakekklqinaqnCvhCktCdikdpsqniew 92 
                 s t h+ + ++h+ +k  +v++ + + +  ++p++ +CP g     +++   +  +++  + C+ CktC +  p+  +e 
  CTQ29508.1  34 SLTPHTFQPRIHV-IKGVNVSTaTACRQCEDAPCANVCPNGAI---SRD---KGFVHVMQERCIGCKTCVVACPYGAMEV 106
                 5667777777775.45555444045555567899999999853...333...457889999*********9999887765 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   3.4     0.023        27      17      44 ..       5      30 ..       2      51 .. 0.73
   2 ?   10.3   4.0   0.00038      0.45      18      39 ..      52      73 ..      38      87 .. 0.82
   3 ?    5.3   3.0     0.013        16      22      39 ..      87     102 ..      78     115 .. 0.87
   4 ?    7.4   3.2    0.0031       3.7      16      42 ..     123     153 ..     111     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.023
                HHHHHTT----TT-HHHHCSTT---HHH CS
     Fer4_20 17 aleeAsRClqCkkapcvkgCPveidipe 44
                ++++As+C+ C  ++c+ +C v+ +  +
  CTQ29508.1  5 IIADASKCIGC--RTCEVACVVSHQEHQ 30
                57899999999..789999988876555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00038
                HHHHTT----TT-HHHHCSTT- CS
     Fer4_20 18 leeAsRClqCkkapcvkgCPve 39
                ++ A+ C qC++apc + CP  
  CTQ29508.1 52 VSTATACRQCEDAPCANVCPNG 73
                678999**************75 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.013
                 TT----TT-HHHHCSTT- CS
     Fer4_20  22 sRClqCkkapcvkgCPve 39 
                 +RC+ C  ++cv +CP  
  CTQ29508.1  87 ERCIGC--KTCVVACPYG 102
                 7*****..78******75 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0031
                 HHHHHHTT----T....T-HHHHCSTT---H CS
     Fer4_20  16 ealeeAsRClqCk....kapcvkgCPveidi 42 
                 + ++eA++C  C      + c++ CP++  +
  CTQ29508.1 123 AEKAEANKCDLCFhresGPACMEVCPTHALV 153
                 5578********62222466*******9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      180  (0.0100396); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1360.92
//
Query:       CTQ29509.1  [L=337]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-34  117.2   0.0    1.7e-33  116.3   0.0    1.5  1  Peripla_BP_3  Periplasmic binding protein-like domain
    2.5e-23   82.9   0.0    3.1e-23   82.6   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
      4e-21   74.5   0.3    7.9e-21   73.6   0.3    1.5  1  LacI          Bacterial regulatory proteins, lacI family
    5.5e-16   58.9   0.0      9e-16   58.2   0.0    1.2  1  Peripla_BP_4  Periplasmic binding protein domain
     0.0002   21.0   0.3       0.26   11.1   0.0    2.9  2  HTH_38        Helix-turn-helix domain
      0.002   18.4   0.1     0.0053   17.1   0.1    1.7  1  HTH_31        Helix-turn-helix domain
     0.0034   17.4   0.0     0.0068   16.5   0.0    1.4  1  HTH_3         Helix-turn-helix
     0.0089   15.8   0.1      0.026   14.3   0.1    1.8  1  TetR_N        Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.038   13.9   0.2        1.1    9.2   0.0    2.5  2  MarR_2        MarR family
      0.077   12.8   0.1       0.24   11.2   0.0    1.9  2  HTH_IclR      IclR helix-turn-helix domain
      0.096   12.7   0.0       0.25   11.4   0.0    1.7  1  DUF1995       Domain of unknown function (DUF1995)
        0.1   12.7   0.0       0.88    9.7   0.0    2.4  2  HTH_7         Helix-turn-helix domain of resolvase
       0.16   11.9   0.1       0.44   10.5   0.1    1.8  1  TrmB          Sugar-specific transcriptional regulator TrmB


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.0   1.2e-36   1.7e-33       1     165 [.     171     330 ..     171     331 .. 0.90

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 1.2e-36
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC-SE..EEEESSCCHHHHHHHHHC CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalll.qalklaalPt..AviaasDelAlgvlqalr 94 
                   ve+L++lGhr+iafi+  g+ ++++  er++g+++al+ +g+ lne ++a+ +++ +++a+  + l q+   +   t  A++a +D +A+g++++l+
    CTQ29509.1 171 VERLIALGHRDIAFIT--GSLDSPTGVERLAGYKDALAGHGIALNEALIAEGRWTPETGAAGVESLrQR---G--VTysALVASNDDMAIGAMKQLH 260
                   799*************..9999************************99999888777777766533211...1..1355****************** PP

                   CTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GG CS
  Peripla_BP_3  95 eaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReS 165
                   + g++vPe++sv+gfdd++la +++P+l +vr+p+ e+ ++ ++ l+ +l+g + + +q  +   l+eReS
    CTQ29509.1 261 QLGVKVPEQVSVVGFDDIALAPYMVPSLASVRVPVTEMIKESINRLIFMLDGGEFNFQQSFP-GALIERES 330
                   **************************************************999999999875.56*****9 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   2.3e-26   3.1e-23       2     224 ..      60     278 ..      59     304 .. 0.88

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 2.3e-26
                   EEEEEEES-T..TSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTT CS
  Peripla_BP_1   2 lklglvlpql..dePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaes.gipvialedaidapdg 94 
                   ++lglv+ +      +f +l++ + +  ++ g++++l  ++  ++ + +ai+ l+  + d++ii  +   +d++ + +e    p++ l++      +
    CTQ29509.1  60 QTLGLVVTNTlyHGVYFSELLYHVARMTEDKGRQLILADGKHSAQEErEAIQYLLDLRCDAIIIYPRFLTVDEMDEIVENhSQPIMVLNRRLRRH-A 155
                   6889999888777889******************98766666566559****************9665554444444444445********9998.9 PP

                   S-EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHH CS
  Peripla_BP_1  95 vPcvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindea 191
                     cv+ d++  + +  + Lia gh+  ia + g   + t  er  G+ +ala++G  + +  +a+g  + e +a  +++l +++ + +a+va nd +
    CTQ29509.1 156 SHCVWSDQKASAMRVVERLIALGHRD-IAFITGSLDSPTGVERLAGYKDALAGHGIALNEALIAEGRWTPETGAAGVESLRQRGVTYSALVASNDDM 251
                   **************************.******999999999999**************************************************** PP

                   HHHHHHHHHHTT.--GGGEEEEEESSGGGHHHH CS
  Peripla_BP_1 192 alGavlalkkeGrlkikeevdsfiesvvvydgL 224
                   a+Ga+  l + G +k +e+v     svv++d +
    CTQ29509.1 252 AIGAMKQLHQLG-VKVPEQV-----SVVGFDDI 278
                   ************.*******.....*****988 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.3   5.7e-24   7.9e-21       1      46 []       3      48 ..       3      48 .. 0.99

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 5.7e-24
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                t+ +VA++AGVSkaTVSrvL+++++Vs+et++rV++a++e +Y+Pn
  CTQ29509.1  3 TMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFKAVAESGYRPN 48
                899******************************************9 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   6.5e-19     9e-16       4     217 ..      66     276 ..      63     281 .. 0.86

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 6.5e-19
                   EES-SSTC.HHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHH.HHHHHHHHTT-.EEEEESTTGCTTT-CE CS
  Peripla_BP_4   4 vvkdksnp.ffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstala.palkkakaaGI.pVvafdsddapsgerl 97 
                   v  +  ++ +fs++   +  + +++g + ++ +d++ +a+e+ ++i+ +++  +d+ii+ p      + + ++++ +++  p+++ ++        +
    CTQ29509.1  66 VTNTLYHGvYFSELLYHVARMTEDKGRQLIL-ADGKHSAQEEREAIQYLLDLRCDAIIIYPRFL---TvDEMDEIVENHSqPIMVLNRR--LRRHAS 156
                   55566677799999999999*******9999.7***************************8774...446677777776669*******..9***** PP

                   EEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECC.EEESTTTCHHHHHHHHHHHHHTT.TECEEEESSC CS
  Peripla_BP_4  98 ayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikiva.evaganwdaekaqqalealltan.pldgilaand 192
                   ++v  d++a++    e l         +++ ++Gs+++p   er++g +++l++  gi + +  +a++ w++e++   +e+l ++  +  + +a nd
    CTQ29509.1 157 HCVWSDQKASAMRVVERLIALGH---RDIAFITGSLDSPTGVERLAGYKDALAG-HGIALNEaLIAEGRWTPETGAAGVESLRQRGvTYSALVASND 249
                   *******************9988...57**************************.45555553344668***************776799******* PP

                   CHHHCHHHHHHHTTT.TSTEE.EEEES CS
  Peripla_BP_4 193 gmaegalealeaagl.agkvv.vtgqD 217
                   +ma+ga++ l + g+  +++v v+g+D
    CTQ29509.1 250 DMAIGAMKQLHQLGVkVPEQVsVVGFD 276
                   **************97444445***99 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00019      0.26      23      42 ..       4      23 ..       2      25 .. 0.86
   2 !    7.1   0.1    0.0033       4.6       2      18 ..      99     115 ..      98     118 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
      HTH_38 23 lreIArrLgrspsTIsRElk 42
                + e+A+r g+s+ T+sR l 
  CTQ29509.1  4 MLEVAKRAGVSKATVSRVLS 23
                6699*************996 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0033
      HTH_38   2 ykhLsleeReeIerlla 18 
                 +kh   eeRe I++ll+
  CTQ29509.1  99 GKHSAQEEREAIQYLLD 115
                 79999**********85 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   3.9e-06    0.0053      19      49 ..       6      35 ..       2      45 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.9e-06
      HTH_31 19 evAerlgvsestlsrlEqGrrgrpspavlea 49
                evA+r+gvs++t+sr+ +G    +s ++ ++
  CTQ29509.1  6 EVAKRAGVSKATVSRVLSGNGY-VSQETKDR 35
                9******************997.88775555 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.9e-06    0.0068      12      40 ..       4      32 ..       3      40 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.9e-06
                HHHHHHHHTSSHHHHHHHHTTSSCSBHHH CS
       HTH_3 12 qeeLAeklGvsrstisriEnGernPslet 40
                + e+A+++Gvs++t+sr  +G    s+et
  CTQ29509.1  4 MLEVAKRAGVSKATVSRVLSGNGYVSQET 32
                569******************77677765 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.9e-05     0.026      17      34 ..       2      19 ..       1      20 [. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
                --HHHHHHHHTSSHHHHH CS
      TetR_N 17 ttvreIAkrAGvskgalY 34
                +t+ e+AkrAGvsk+++ 
  CTQ29509.1  2 ATMLEVAKRAGVSKATVS 19
                58**************86 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0008       1.1      23      42 ..       3      22 ..       1      33 [. 0.90
   2 ?    2.0   0.1      0.14   1.9e+02      35      50 ..     164     179 ..     163     179 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0008
                EHHHHHHHHTSSHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsril 42
                t+ e+a+r g+sk++vsr+l
  CTQ29509.1  3 TMLEVAKRAGVSKATVSRVL 22
                66799*************97 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHTTS CS
      MarR_2  35 ksavsrilkrLvaaGL 50 
                 k+++ r+++rL a G+
  CTQ29509.1 164 KASAMRVVERLIALGH 179
                 899**********995 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00018      0.24      22      40 ..       5      23 ..       1      31 [. 0.87
   2 ?   -3.3   0.0         6   8.3e+03      32      46 ..     164     178 ..     164     178 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
                HHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 22 selArrtglpkStvhRlLq 40
                 e+A+r+g++k+tv+R L+
  CTQ29509.1  5 LEVAKRAGVSKATVSRVLS 23
                59**************986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6
                 HHHHHHHHHHHHHTT CS
    HTH_IclR  32 kStvhRlLqtLvelG 46 
                 k+++ R +  L+ lG
  CTQ29509.1 164 KASAMRVVERLIALG 178
                 678888888888877 PP

>> DUF1995  Domain of unknown function (DUF1995)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00018      0.25      86     122 ..     120     155 ..      50     174 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
     DUF1995  86 fvvvaPspseleavealaeaagdrpvvllNprledvd 122
                 +++++P + +++++++++e+++ +p+ +lN rl++ +
  CTQ29509.1 120 AIIIYPRFLTVDEMDEIVENHS-QPIMVLNRRLRRHA 155
                 689*****************77.**********9966 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00064      0.88      26      44 ..       6      24 ..       3      25 .. 0.90
   2 ?   -0.7   0.0       1.2   1.6e+03       8      21 ..     300     313 ..     298     315 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00064
                TTSSSS---SSSS--SS-- CS
       HTH_7 26 kIAkevnisRsTvYRylad 44
                ++Ak+ ++s++Tv R+l+ 
  CTQ29509.1  6 EVAKRAGVSKATVSRVLSG 24
                69**************986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.2
                 HHHHGGGGSSTTTT CS
       HTH_7   8 kndinrvvkLleeG 21 
                 k++inr++ +l+ G
  CTQ29509.1 300 KESINRLIFMLDGG 313
                 468*********99 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00032      0.44      23      53 ..       2      29 ..       1      41 [. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00032
                CHHCHHCCCTTSSCHCHHHHHHHHHHCTSEE CS
        TrmB 23 atadeiaeelgvprskvYevLrsLedkGlVe 53
                at+ e+a+++gv++++v +vL+     G+V 
  CTQ29509.1  2 ATMLEVAKRAGVSKATVSRVLS---GNGYVS 29
                6889****************86...455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2619.26
//
Query:       CTQ29510.1  [L=480]
Description: fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component; IIC component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-40  138.7  29.2    2.1e-40  138.7  29.2    1.5  2  PTS_EIIC  Phosphotransferase system, EIIC
    2.5e-16   58.8   0.1    4.3e-16   58.1   0.1    1.4  1  PTS_EIIB  phosphotransferase system, EIIB


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7  29.2   2.3e-44   2.1e-40       3     324 .]     113     396 ..     111     396 .. 0.92
   2 ?   -3.8   0.5      0.54   4.8e+03      55      55 ..     436     436 ..     400     455 .. 0.53

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 2.3e-44
    PTS_EIIC   3 gfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvlll 101
                 ++++ ip++i g+++ +l++  +      l ++g  +  s++ ++l+ +g+++f +Lpl++a+++a ++  ++++ +++a++ +l+++    +i+++++
  CTQ29510.1 113 TMSPLIPAIIGGSMVKLLAM--I------LEMSGALPKGSPTLTLLALIGDGAFFFLPLMVAASAAVKF--KTNMSLAIAIAGVLVHPG---FIELMAK 198
                 799*****************..2......333566778999999*************************..****************99...7999999 PP

    PTS_EIIC 102 aagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggsgs 200
                 aa++   ++ +++ i+++++++++++i++l+++++++++e+++ +  P +   f++++++++i + +++l++g+++ +i++ai+ ++ +    ++++ +
  CTQ29510.1 199 AAQG---EHVEFAFIPVTAVKYTYTVIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPLGIWIGSAISALVYT----IHSYLG 290
                 9999...8*********************************999999******************************************....9***** PP

    PTS_EIIC 201 llgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllgsaaltpflfG 299
                 +l+v+i+g+l++ll+++G+H +f++++++t+a  +               ++++ +e + +++++ g  la+++   ++k+ + ++++++aa+ ++l G
  CTQ29510.1 291 WLSVAIMGGLWPLLVMTGMHRVFTPTIIQTIA-ETGK------------EGMVMPSE-IGANLSLGGSSLAVAW---KTKNPELRQTALAAAASAILAG 372
                 *******************************9.2222............23344444.2599999999999999...********************** PP

    PTS_EIIC 300 ItepleFgfpfvlnlllfipallag 324
                 I+ep+++g+ ++l+++ +i++l++g
  CTQ29510.1 373 ISEPALYGVAVRLKRP-LIASLISG 396
                 ****************.99999987 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.54
    PTS_EIIC  55 v 55 
                 v
  CTQ29510.1 436 V 436
                 2 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.1   4.8e-20   4.3e-16       1      34 []      10      43 ..      10      43 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 4.8e-20
                HHHHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB  1 keIldalGGkdNIesvthCaTRLRltlkDaskvd 34
                ++I++a+GG dN+  vthC+TRLR+++kD+++vd
  CTQ29510.1 10 QQIVAAIGGVDNVAAVTHCMTRLRFVVKDDEQVD 43
                69*******************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3676.70
//
Query:       CTQ29511.1  [L=474]
Description: cryptic 6-phospho-beta-glucosidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.4e-136  453.2   0.1     1e-135  452.7   0.1    1.2  1  Glyco_hydro_1  Glycosyl hydrolase family 1
  ------ inclusion threshold ------
      0.054   12.9   0.0      0.088   12.2   0.0    1.4  1  Cellulase      Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  452.7   0.1  1.1e-139    1e-135       4     452 ..       3     470 ..       1     471 [. 0.92

  Alignments for each domain:
  == domain 1  score: 452.7 bits;  conditional E-value: 1.1e-139
                    GS-TT-EEEEE--HHHHH--TTSTT---BHHH.................HHHHHGGGSTTS--..-SSTT-HHHHHHHHHHHHHHTT-SEEEEE-- CS
  Glyco_hydro_1   4 tfpedFlwgaataayqiEGawnedGkgesiwD.................tftetpgkvlegsn..gdvacdsYhrykeDvallkelgvkayrfSis 80 
                    +fp++Flwg+a aa+q EGa+ e+Gkg+++ D                 +f     +  e++   +  a+d+YhrykeD+al++e+g++++r Si+
     CTQ29511.1   3 SFPQGFLWGGALAANQSEGAYLEGGKGLTTVDtlphgahrlpvklglekRF---TLR--EDEFypSHQAIDFYHRYKEDIALMAEMGFSVFRTSIA 93 
                    7*******************************5555555544432211111...122..222234889**************************** PP

                    HHHHSTTS.TT---HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH.H-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHH CS
  Glyco_hydro_1  81 WpRilPkG.egeinekGlayYerLidelleagieplvTlyHwdlPqaLqd.eGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgy 174
                    W+R++P+G e ++n++G+a+Y++L++e++++gieplvTl H+d+P  L   +G w+nr+++d f++ya+++f+ f   vk+wlTfnE+n++ + +y
     CTQ29511.1  94 WSRLFPRGdEQQPNPQGIAFYRSLFEECKKHGIEPLVTLCHFDVPMHLVMeYGSWRNRKMVDFFSHYARTCFEAFDGLVKYWLTFNEINIMLHSPY 189
                    *********************************************998654********************************************* PP

                    TSS..-STT-S-TTTHHHHHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHH.HHHHHHHHHHTHHHHHHHHHSS--HHHHHHHG CS
  Glyco_hydro_1 175 ltg..efaPgkkdleaayeaaHnlllaharavklykevaqkgkigivlnlslaeplseseedk.eaaeraleflngwfldpvvkGdYpeemkellr 267
                      +  +f  g+++ +  y+aaH+ l+a+a a k  +e++++ ++g +l+    +p+s ++ed+  a e+ +e l  +f+d++ +G+Yp  + +++r
     CTQ29511.1 190 SGAglVFEEGENQEQVKYQAAHHELVASALATKIAHEINPQNQVGCMLAGGNFYPYSCKPEDVwMALEKDRENL--FFIDVQARGAYPVWAARVFR 283
                    876346888999999************************************************99999998866..******************** PP

                    GG..S----HHHHHHHTT--SEEEEEEEEEEEEEE--...-STT---SSGGGGG-SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE--- CS
  Glyco_hydro_1 268 ergalpeiteedkellkgkadflglnyYtsrlvknkeseeaslskteekkleeevdpslpktdigwiiepeglrkllellkkeYqklpiyiteNGl 363
                    e+g +   + +d e+lk+++df++++yY sr+++++    + +++++ + +++ ++p++p +++gw i+p glr  +++++++Yq +p++++eNGl
     CTQ29511.1 284 EKGVTIAKQPGDDEILKNTVDFVSFSYYASRCASAEM---NASNTNAANIVKSLKNPHIPASEWGWGIDPLGLRITMNMMYDRYQ-KPLFLVENGL 375
                    ********************************99988...6777788888999999*****************************.9********* PP

                    -EE-BSSS.HHH--HHHHHHHHHHHHHHHHHHHTT--EEEEEEE-SB----GGGT.TSEE--SEEEET....TTTTEEEE-HHHHHHHHHHH-SS CS
  Glyco_hydro_1 364 gakdeiee.gkveDdkRidYlkehlnevkkaiedgvdlkgYvawsllDnfewaeg.yskrfGlvyvdr....netleRtpkkSakwykeviekng 452
                    ga+dei   g+++Dd+Ri+Yl+eh+ ++++ai dg+ + gY++w+ +D++++++g +skr+G+vyvdr    n tl R++kkS+ wy++vi++ng
     CTQ29511.1 376 GARDEIDAnGDINDDYRISYLREHIRAMRDAIGDGIPVMGYTSWGCIDLVSASTGeMSKRYGFVYVDRddagNGTLARKRKKSFFWYQKVIASNG 470
                    *****9877***********************************************************999999******************997 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.9e-06     0.088      23      82 ..      73     132 ..      59     209 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.9e-06
                 HHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEE CS
   Cellulase  23 tkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildi 82 
                  k+ i++++++gf ++R  ++w +l++ +++ + +++ ++ +  + + +k++g+  ++ +
  CTQ29511.1  73 YKEDIALMAEMGFSVFRTSIAWSRLFPRGDEQQPNPQGIAFYRSLFEECKKHGIEPLVTL 132
                 578999*************************9******9999999999999999866655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3516.82
//
Query:       CTQ29512.1  [L=102]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-19   68.4   0.0    5.2e-19   68.0   0.0    1.2  1  SymE_toxin  Toxin SymE, type I toxin-antitoxin system


Domain annotation for each model (and alignments):
>> SymE_toxin  Toxin SymE, type I toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   2.9e-23   5.2e-19       2      53 ..      17      75 ..      16      76 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 2.9e-23
  SymE_toxin  2 raltVgyvfaelenn.......vqdnpeltLkGeWLeqaGFatGqpltisVmegrlvit 53
                r+ltVgyv++++e++       + ++ +l+L G+WLeqaGF +G+++++sV++g+lvi+
  CTQ29512.1 17 RQLTVGYVRKRHEDRktretrrYTRHAALSLNGDWLEQAGFPVGTQVRVSVSPGKLVIE 75
                899*******************************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 829.94
//
Query:       CTQ29513.1  [L=156]
Description: protease involved in processing C-terminal end of HycE [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-28   99.4   0.0    1.6e-28   99.2   0.0    1.1  1  HycI      Hydrogenase maturation protease


Domain annotation for each model (and alignments):
>> HycI  Hydrogenase maturation protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   0.0   8.6e-33   1.6e-28      12     128 ..      29     140 ..      20     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 8.6e-33
                 C--TTEEEEEECT-SGGGHHHHCC..-SEEEEEEE--SSS-TT-EEEEECCHHHHHHTTC.CGCCCHCHHHHHHHHHHCCS--SEEEEEEE--S-BST. CS
        HycI  12 efkenvtviDgGtqglelvgtlee..adkliivDavdfglepGevkiikddevpkklkakkmsaHqlplaevlklleekgeipkevillgvqpesledv 108
                 ++ +++ viDgG+++++ +  ++e  +++l+ivDa+d+gl+pG ++ii+ d++   ++++ m++H++pl++++++l+e+     evi+lg+qp+++ + 
  CTQ29513.1  29 NPAGQWVVIDGGSAPENDIVAIRElrPERLLIVDATDMGLNPGDIRIIDPDDIA--EMFM-MTTHNMPLNYLVDQLKEDVG---EVIFLGIQPDIVGF- 120
                 56679*************************************************..5888.99****************76...9*************. PP

                 CCS--HHHHCCHHHHHHHCC CS
        HycI 109 gielseevkkavekavelil 128
                 +++++++vk+av ++++++ 
  CTQ29513.1 121 YYPMTQPVKEAVARVYQQLA 140
                 ***************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1279.90
//
Query:       CTQ29514.1  [L=136]
Description: protein required for maturation of hydrogenase 3 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-55  184.9   0.0      8e-55  184.7   0.0    1.0  1  HycH      Formate hydrogenlyase maturation protein HycH


Domain annotation for each model (and alignments):
>> HycH  Formate hydrogenlyase maturation protein HycH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.7   0.0   4.4e-59     8e-55       1     129 []       4     133 ..       4     133 .. 0.99

  Alignments for each domain:
  == domain 1  score: 184.7 bits;  conditional E-value: 4.4e-59
        HycH   1 evvFykLsrkfvdeeedvpeeaqqvlYysLaiGHHvGviDclkealsvpleeyeklvalleeg.earrKlegllkfgEieidkehvellaaaldellke 98 
                 +vvF +Lsrkf+de++++p++aqqv+YysLaiGHH+GviDcl++als p+++y +++a+le+g  arrK+eg+ k+gEi id++hv++la+a+d+++++
  CTQ29514.1   4 TVVFSQLSRKFIDENDATPDQAQQVVYYSLAIGHHLGVIDCLEAALSFPWDAYLAWIATLEAGsAARRKMEGVPKYGEIVIDSSHVAMLANAFDKAQSA 102
                 59*************************************************************899********************************* PP

        HycH  99 lesekeewskellelLeeiekepaiylmvrr 129
                 +++++++wsk+ll++L++i++e aiylmvrr
  CTQ29514.1 103 QTPQQQAWSKTLLSMLHDIHQESAIYLMVRR 133
                 *****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1141.71
//
Query:       CTQ29515.1  [L=255]
Description: hydrogenase 3 and formate hydrogenase complex, HycG subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-23   82.6   0.1    2.9e-23   82.1   0.1    1.2  1  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.1   1.6e-27   2.9e-23       1     129 [.      48     157 ..      48     159 .. 0.94

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 1.6e-27
                  -SHHHHHHT-TTTTHHHHHHTEEEEEETTT-S--HHHHHHTHTTTSEEEEEESBE...EEEHHHHHHHHGGGSSEEEEESHHHHH-TGGGSTT-TEE- CS
  Oxidored_q6   1 CtGcsisllaleedlldllelielryhetlladskeeeieakekeadvlvveGavtrkpkealellkelaekakaviavGtCAafGGipaaannpsvg 98 
                  C+Gc+i++ a+ ++l+d+     +r++++++ +++         +ad+l+++Gavtr++++   ++++ a+++k++i++G+C  +GGi+  ++ + ++
   CTQ29515.1  48 CNGCEIEIFATLSPLFDA-----ERFGIKVVPSPR---------HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIF--HDLY-CV 128
                  ******************.....************.........*********************************************..5544.44 PP

                  HHHHHHHC.S-E.EEE-SSS--HHHHHHHHH CS
  Oxidored_q6  99 eevgellevvpvdinipGCPphpeailetll 129
                     g+ ++ vpvd++ipGCPp+p+a l++++
   CTQ29515.1 129 --WGGTDKIVPVDVYIPGCPPTPAATLYGFA 157
                  ..5799******************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2116.36
//
Query:       CTQ29516.1  [L=180]
Description: formate hydrogenlyase complex iron-sulfur protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-14   50.7  11.1    7.8e-09   35.0   1.3    3.0  4  Fer4      4Fe-4S binding domain
    1.8e-12   47.6   9.0    1.8e-12   47.6   9.0    2.8  2  Fer4_7    4Fe-4S dicluster domain
    6.3e-12   45.5  21.0    1.9e-09   37.6  10.3    3.0  4  Fer4_9    4Fe-4S dicluster domain
    4.7e-09   35.9  12.1    7.2e-06   25.8   2.9    3.8  4  Fer4_6    4Fe-4S binding domain
    9.8e-09   35.2  10.9    9.8e-09   35.2  10.9    3.1  2  Fer4_10   4Fe-4S dicluster domain
    2.4e-07   30.8   7.8    2.4e-07   30.8   7.8    2.4  2  Fer4_21   4Fe-4S dicluster domain
    1.2e-06   29.3  24.7     0.0015   19.5   1.9    3.6  2  Fer4_16   4Fe-4S double cluster binding domain
    0.00012   22.0  12.1     0.0038   17.2   4.2    4.1  4  Fer4_2    4Fe-4S binding domain
    0.00027   21.7  19.4     0.0045   17.8   7.3    3.8  4  Fer4_3    4Fe-4S binding domain
    0.00034   21.0  12.8    0.00034   21.0  12.8    3.2  2  Fer4_8    4Fe-4S dicluster domain
    0.00038   21.0  22.1     0.0022   18.5  11.4    3.6  3  Fer4_17   4Fe-4S dicluster domain
    0.00073   19.9  12.3     0.0022   18.4   3.2    4.1  4  Fer4_4    4Fe-4S binding domain
     0.0076   17.1   6.5       0.13   13.1   1.9    3.0  3  Fer4_22   4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.055   14.0  20.8       0.15   12.6   4.8    3.3  3  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I
       0.14   12.4  15.8       0.19   11.9   0.4    2.9  3  Fer4_18   4Fe-4S dicluster domain
        7.4    7.4  16.8       0.37   11.6   0.9    3.1  3  Fer4_15   4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   2.8   1.7e-09   1.9e-06       5      24 .]      37      56 ..      33      56 .. 0.89
   2 !   35.0   1.3     7e-12   7.8e-09       3      24 .]      70      91 ..      68      91 .. 0.92
   3 ?   -3.2   0.3         8     9e+03      11      14 ..     117     120 ..     116     121 .. 0.72
   4 ?   -3.2   0.4       7.8   8.7e+03      17      19 ..     154     156 ..     152     159 .. 0.54

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.7e-09
                TTTSSS-THHHHHSTTTEEE CS
        Fer4  5 eekCigCGaCvevCPvgAIt 24
                +  CigC aCv++CP +A+t
  CTQ29516.1 37 PQQCIGCAACVNACPSNALT 56
                667***************86 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 7e-12
                EETTTSSS-THHHHHSTTTEEE CS
        Fer4  3 ideekCigCGaCvevCPvgAIt 24
                ++  +Ci+CG+C+evCP+ AI+
  CTQ29516.1 70 FNLGRCIFCGRCEEVCPTAAIK 91
                7889****************96 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 8
                 -THH CS
        Fer4  11 CGaC 14 
                 C +C
  CTQ29516.1 117 CREC 120
                 8888 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 7.8
                 HST CS
        Fer4  17 vCP 19 
                  CP
  CTQ29516.1 154 TCP 156
                 455 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   9.0   1.6e-15   1.8e-12       1      52 []      39      89 ..      39      89 .. 0.89
   2 !   10.8  16.9   0.00052      0.59       1      45 [.      74     121 ..      74     165 .. 0.71

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 1.6e-15
      Fer4_7  1 rCigCgaCvaaCpvkaieldeeenekgtekveidpekClgCgaCvavCPtga 52
                +CigC aCv+aCp++a++++ +     +  ++++  +C++Cg+C++vCPt a
  CTQ29516.1 39 QCIGCAACVNACPSNALTVEIDLAT-NQLAWQFNLGRCIFCGRCEEVCPTAA 89
                6*****************9876444.4578*******************987 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00052
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenekgtekvei.dpekCl..gCgaCv 45 
                 rCi Cg+C+++Cp+ ai+l +e + +  +k ++ ++++    +C++C+
  CTQ29516.1  74 RCIFCGRCEEVCPTAAIKLSPEYELAVWKKEDFlQQSRFAicHCRECQ 121
                 8******************99765555555544223332222555555 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   2.9     4e-07   0.00044      25      50 ..      32      54 ..      21      55 .. 0.68
   2 !   37.6  10.3   1.7e-12   1.9e-09       1      51 []      39      90 ..      39      90 .. 0.89
   3 !   13.5   9.9   5.6e-05     0.063       1      42 [.      74     120 ..      74     128 .. 0.80
   4 ?   -1.8   6.3       3.3   3.7e+03       5      42 ..     117     163 ..     113     166 .. 0.50

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4e-07
      Fer4_9 25 karlraaseeaCigCgaCveaCpkga 50
                k +++    ++CigC aCv+aCp++a
  CTQ29516.1 32 KPEHTP---QQCIGCAACVNACPSNA 54
                333322...58************986 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 1.7e-12
      Fer4_9  1 kCtgCgaCveaCpagvvvedaaerkarlraase.eaCigCgaCveaCpkgai 51
                +C+gC aCv+aCp+++ + +    +++l ++ +  +Ci+Cg+C+e+Cp+ ai
  CTQ29516.1 39 QCIGCAACVNACPSNALTVEIDLATNQLAWQFNlGRCIFCGRCEEVCPTAAI 90
                6****************9888888888866555799*************987 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 5.6e-05
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraase......eaCigCgaC 42 
                 +C+ Cg+C+e+Cp+ +++ +   + a  ++++         C+ C++C
  CTQ29516.1  74 RCIFCGRCEEVCPTAAIKLSPEYELAVWKKEDFlqqsrfAICH-CREC 120
                 5999999999999999999999999888776669999984455.5555 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 3.3
      Fer4_9   5 CgaCveaCpagvvvedaaerkarlraase...........eaCigCga..C 42 
                 C++C++  p+ v  +++  + ++l + +            e C +C++  C
  CTQ29516.1 117 CRECQR--PFAV--QKEIDYAIALLKHNGdtraelhresfETCPECKRqkC 163
                 444444..3333..3333333332222223566677777788999975445 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   2.9   6.5e-09   7.2e-06       1      24 []      32      55 ..      32      55 .. 0.93
   2 !   22.1   1.9     1e-07   0.00011       4      24 .]      70      90 ..      69      90 .. 0.91
   3 ?   -1.7   2.0       3.3   3.7e+03      11      15 ..     116     120 ..     114     122 .. 0.83
   4 ?   -1.3   0.9       2.4   2.7e+03       9      14 ..     155     160 ..     153     165 .. 0.55

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 6.5e-09
      Fer4_6  1 vveidpdkCigCgdCvrvCPegai 24
                ++e+ p+ CigC +Cv++CP +a+
  CTQ29516.1 32 KPEHTPQQCIGCAACVNACPSNAL 55
                68999****************997 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 1e-07
      Fer4_6  4 idpdkCigCgdCvrvCPegai 24
                ++  +Ci Cg+C+ vCP++ai
  CTQ29516.1 70 FNLGRCIFCGRCEEVCPTAAI 90
                67789**************98 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3.3
      Fer4_6  11 gCgdC 15 
                 +C++C
  CTQ29516.1 116 HCREC 120
                 7**** PP

  == domain 4  score: -1.3 bits;  conditional E-value: 2.4
      Fer4_6   9 CigCgd 14 
                 C  C +
  CTQ29516.1 155 CPECKR 160
                 666654 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2  10.9   8.8e-12   9.8e-09       3      56 .]      34      86 ..      32      86 .. 0.87
   2 !    9.4  14.6     0.001       1.1       2      24 ..      68     125 ..      67     165 .. 0.62

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 8.8e-12
     Fer4_10  3 vidddtCirCgkCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaCP 56
                ++ +++Ci+C++Cv+aCP+ +   + ++ a+++ a + ++++C++cg C e+CP
  CTQ29516.1 34 EHTPQQCIGCAACVNACPS-NALTVEIDLATNQLAWQFNLGRCIFCGRCEEVCP 86
                56789**************.6666777788888888999**************9 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.001
     Fer4_10   2 vvidddtCirCgkCvkaCPadl...................................t 24 
                 ++++  +Ci Cg+C ++CP+ +                                    
  CTQ29516.1  68 WQFNLGRCIFCGRCEEVCPTAAiklspeyelavwkkedflqqsrfaichcrecqrpfA 125
                 5678889*************77888888655555555555555555555555555550 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   7.8   2.2e-10   2.4e-07       5      58 ..      37      91 ..      34      93 .. 0.80
   2 ?   -0.7   1.8       1.4   1.6e+03      26      47 ..     137     158 ..     112     172 .. 0.50

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 2.2e-10
     Fer4_21  5 edkCigCgkCliaCedtshqa.ieidaktvl.kvvedeCvGCnlCssvCPvedcie 58
                +++CigC  C+ aC+ ++ +  i++++++ + +    +C+ C  C +vCP+  +i+
  CTQ29516.1 37 PQQCIGCAACVNACPSNALTVeIDLATNQLAwQFNLGRCIFCGRCEEVCPT-AAIK 91
                589************9887653666666544267789*************7.7776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.4
     Fer4_21  26 ieidaktvlkvvedeCvGCnlC 47 
                 ++ +++t++++  ++   C  C
  CTQ29516.1 137 LKHNGDTRAELHRESFETCPEC 158
                 3555555555555444444444 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   1.9   1.3e-06    0.0015       1      20 [.      39      58 ..      39      67 .. 0.87
   2 !   12.0  15.3   0.00027      0.31       1      31 [.      74     104 ..      74     163 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.3e-06
     Fer4_16  1 rCgtCgkCaevCPtnaikek 20
                +C++C +C+++CP+na++ +
  CTQ29516.1 39 QCIGCAACVNACPSNALTVE 58
                6***************9977 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00027
     Fer4_16   1 rCgtCgkCaevCPtnaikekkekeieareci 31 
                 rC+ Cg+C evCPt+aik   e+e++  +++
  CTQ29516.1  74 RCIFCGRCEEVCPTAAIKLSPEYELAVWKKE 104
                 6*****************9977766554443 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   4.2   3.4e-06    0.0038       6      21 ..      36      51 ..      31      52 .. 0.84
   2 !   16.4   1.0   6.5e-06    0.0072       4      22 .]      69      87 ..      66      87 .. 0.91
   3 ?   -1.1   1.6       2.4   2.6e+03      12      17 ..     116     121 ..     112     122 .. 0.65
   4 ?    1.9   0.5      0.25   2.8e+02       8      16 ..     153     163 ..     148     165 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.4e-06
      Fer4_2  6 dtdrCigCgaCvsaCP 21
                 ++ CigC aCv+aCP
  CTQ29516.1 36 TPQQCIGCAACVNACP 51
                5788************ PP

  == domain 2  score: 16.4 bits;  conditional E-value: 6.5e-06
      Fer4_2  4 vvdtdrCigCgaCvsaCPa 22
                +++  rCi Cg C  +CP+
  CTQ29516.1 69 QFNLGRCIFCGRCEEVCPT 87
                68999*************7 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.4
      Fer4_2  12 gCgaCv 17 
                 +C+ C+
  CTQ29516.1 116 HCRECQ 121
                 566664 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.25
      Fer4_2   8 drCigCg..aC 16 
                 ++C +C+  +C
  CTQ29516.1 153 ETCPECKrqKC 163
                 79****76688 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   7.3     4e-06    0.0045       1      15 []      40      54 ..      40      54 .. 0.98
   2 !   16.4   4.3   1.2e-05     0.013       1      13 [.      75      87 ..      75      89 .. 0.92
   3 ?   -1.4   4.0       5.7   6.3e+03       1       8 [.     115     121 ..     115     122 .. 0.83
   4 ?   -1.8   0.6       7.8   8.7e+03      10      13 ..     154     157 ..     152     164 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4e-06
      Fer4_3  1 CtgCgaCvevCPvgA 15
                C+gC aCv++CP++A
  CTQ29516.1 40 CIGCAACVNACPSNA 54
                *************98 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.2e-05
      Fer4_3  1 CtgCgaCvevCPv 13
                C+ Cg+C+evCP+
  CTQ29516.1 75 CIFCGRCEEVCPT 87
                ************8 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 5.7
      Fer4_3   1 CtgCgaCv 8  
                 C +C+ C 
  CTQ29516.1 115 C-HCRECQ 121
                 8.9*9995 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 7.8
      Fer4_3  10 vCPv 13 
                  CP+
  CTQ29516.1 154 TCPE 157
                 5773 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0  12.8   3.1e-07   0.00034       4      63 ..      39      87 ..      37      89 .. 0.78
   2 !    6.8  13.8    0.0084       9.4       3      35 ..      73     122 ..      71     166 .. 0.46

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 3.1e-07
      Fer4_8  4 kCieCgaCqsaCpvlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpv 63
                +Ci+C aC +aCp+   t +  l +++        +q      +l++C  cg+C+evCp+
  CTQ29516.1 39 QCIGCAACVNACPSNALTVEIDLATNQL------AWQF-----NLGRCIFCGRCEEVCPT 87
                8************888876554444333......3556.....599*************7 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0084
      Fer4_8   3 ekCieCgaCqsaCpvlrrtk.khlldargeaae................d 35 
                  +Ci Cg+C++ Cp++  +   +   a  ++++                +
  CTQ29516.1  73 GRCIFCGRCEEVCPTAAIKLsPEYELAVWKKEDflqqsrfaichcrecqR 122
                 589**********9666654233333333322222222222233333330 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   2.9   2.6e-05     0.029      41      59 ..      35      53 ..      10      55 .. 0.77
   2 !   18.5  11.4     2e-06    0.0022       1      58 [.      39      87 ..      39      89 .. 0.76
   3 ?    2.4  15.2      0.21   2.3e+02       1      53 [.      74     121 ..      74     165 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.6e-05
     Fer4_17 41 ekaslCieCgeCerkCPqg 59
                ++ ++Ci+C  C+ +CP++
  CTQ29516.1 35 HTPQQCIGCAACVNACPSN 53
                6778999999999999986 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 2e-06
     Fer4_17  1 rCiqCgyClpeCpsyeaydnepkkllraaklglleeaekeekaslCieCgeCerkCPq 58
                +Ci+C++C+++Cps++ + +        + l+ +++   + + ++Ci Cg+Ce++CP 
  CTQ29516.1 39 QCIGCAACVNACPSNALTVE--------IDLA-TNQLAWQFNLGRCIFCGRCEEVCPT 87
                6*************999655........2221.12334456789*************6 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.21
     Fer4_17   1 rCiqCgyClpeCpsyeaydnepkkllraaklglleeaekeekaslCieCgeCe 53 
                 rCi Cg C+++Cp+ ++  +    + ++++++++e+  +++++  C +C+eC+
  CTQ29516.1  74 RCIFCGRCEEVCPTAAIKLS----PEYELAVWKKEDFLQQSRFAIC-HCRECQ 121
                 69999999999999888776....5555556666666666655555.355554 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   3.2   1.9e-06    0.0022       3      17 .]      39      53 ..      37      55 .. 0.89
   2 !   13.5   1.8   7.3e-05     0.081       3      16 ..      74      87 ..      72      94 .. 0.92
   3 ?   -1.0   2.2       3.1   3.4e+03       6      11 ..     116     121 ..     113     122 .. 0.78
   4 ?   -0.4   1.6         2   2.2e+03       7      12 ..     155     160 ..     153     164 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.9e-06
      Fer4_4  3 rCigCgsCvaaCPqg 17
                 CigC +Cv+aCP++
  CTQ29516.1 39 QCIGCAACVNACPSN 53
                5************75 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 7.3e-05
      Fer4_4  3 rCigCgsCvaaCPq 16
                rCi Cg+C+ +CP+
  CTQ29516.1 74 RCIFCGRCEEVCPT 87
                9************6 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3.1
      Fer4_4   6 gCgsCv 11 
                 +C+ C 
  CTQ29516.1 116 HCRECQ 121
                 788885 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 2
      Fer4_4   7 CgsCva 12 
                 C+ C +
  CTQ29516.1 155 CPECKR 160
                 777765 PP

>> Fer4_22  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   0.00013      0.14      76      95 ..      34      53 ..      16      54 .. 0.82
   2 !   13.1   1.9   0.00012      0.13      75      94 ..      68      87 ..      61      90 .. 0.74
   3 ?    2.9  12.3      0.17   1.9e+02       1      23 [.      74      96 ..      74     169 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00013
     Fer4_22 76 kfgesgCvGCgRCieacpvk 95
                ++  ++C+GC  C++acp++
  CTQ29516.1 34 EHTPQQCIGCAACVNACPSN 53
                567789***********975 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00012
     Fer4_22 75 ekfgesgCvGCgRCieacpv 94
                 +f+   C+ CgRC+e+cp+
  CTQ29516.1 68 WQFNLGRCIFCGRCEEVCPT 87
                56777788888888888875 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.17
     Fer4_22  1 rClsCgaCtlvCptCsCfdvede 23
                rC+ Cg+C  vCpt       + 
  CTQ29516.1 74 RCIFCGRCEEVCPTAAIKLSPEY 96
                69999999999999765544444 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   4.8   0.00014      0.15       4      18 ..      38      52 ..      36      53 .. 0.91
   2 ?    8.9   1.1     0.002       2.2       5      18 ..      74      87 ..      71      92 .. 0.91
   3 ?    2.6   0.9      0.18     2e+02      16      52 ..     120     156 ..     113     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00014
     Fer4_13  4 dtCiacgaCvelaPd 18
                ++Ci+c+aCv+++P 
  CTQ29516.1 38 QQCIGCAACVNACPS 52
                69************6 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.002
     Fer4_13  5 tCiacgaCvelaPd 18
                +Ci cg C e++P 
  CTQ29516.1 74 RCIFCGRCEEVCPT 87
                7************6 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.18
     Fer4_13  16 aPdvFeeddeggasvvaeqptseeekadaeeAadaCP 52 
                 +   F+ ++e  +++   + ++++  ++ +e +++CP
  CTQ29516.1 120 CQRPFAVQKEIDYAIALLKHNGDTRAELHRESFETCP 156
                 55668888888888888888999999*********** PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.6   0.00071      0.79      57      73 ..      36      52 ..      20      61 .. 0.75
   2 ?   11.9   0.4   0.00017      0.19      48      74 ..      62      88 ..      52      94 .. 0.81
   3 ?   -2.0   0.1       3.5   3.9e+03      51      66 ..     145     160 ..     133     170 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00071
     Fer4_18 57 gagdcidcescvkvcPt 73
                +  +ci c +cv+ cP 
  CTQ29516.1 36 TPQQCIGCAACVNACPS 52
                55678888888888885 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00017
     Fer4_18 48 kekeerkekgagdcidcescvkvcPtg 74
                +++++  + + g ci c+ c +vcPt 
  CTQ29516.1 62 ATNQLAWQFNLGRCIFCGRCEEVCPTA 88
                556666677889*************95 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.5
     Fer4_18  51 eerkekgagdcidces 66 
                  e ++++   c +c+ 
  CTQ29516.1 145 AELHRESFETCPECKR 160
                 4445666667777764 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.9   0.00033      0.37       6      20 ..      38      52 ..      37      65 .. 0.85
   2 ?    3.9   4.0     0.083        93       7      20 ..      74      87 ..      70     105 .. 0.86
   3 ?   -1.2   0.2       3.2   3.6e+03      46      61 ..     142     157 ..     117     158 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00033
     Fer4_15  6 daCigcglCvaeape 20
                ++Cigc++Cv ++p 
  CTQ29516.1 38 QQCIGCAACVNACPS 52
                58***********96 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.083
     Fer4_15  7 aCigcglCvaeape 20
                +Ci cg+C +++p+
  CTQ29516.1 74 RCIFCGRCEEVCPT 87
                8*********9986 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.2
     Fer4_15  46 ddeeeaaqeAaraCPv 61 
                 d++ e  +e+ ++CP+
  CTQ29516.1 142 DTRAELHRESFETCPE 157
                 5666666778888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1389.16
//
Query:       CTQ29517.1  [L=569]
Description: hydrogenase 3, large subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-47  161.4   0.0    1.7e-34  119.2   0.0    2.2  2  Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd s
    1.5e-27   96.7   0.0    3.1e-27   95.6   0.0    1.5  1  Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd s
      2e-13   50.1   5.0    6.9e-13   48.3   0.1    3.1  4  NiFeSe_Hases    Nickel-dependent hydrogenase


Domain annotation for each model (and alignments):
>> Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.0   2.8e-38   1.7e-34       3     171 ..     296     464 ..     295     471 .. 0.97
   2 !   40.9   0.0   2.1e-14   1.3e-10     202     271 .]     468     537 ..     459     537 .. 0.92

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 2.8e-38
                     T-HHHHHHHHHHHHHHHHHHHHHHSSSSS-TTBESSBBSS---TTHHHHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHSSSS-BSHHHHHHHTT- CS
  Complex1_49kDa   3 GaltvflyafreRekildlleevtGaRltasyiriGGvarDlpegllekikeflkelekkldeleklltknrifkkRtkgvgvlskeealelglt 97 
                     G  + f+  fr Re  +++ e +tGaR t+    iGG++rDl ++ + +++++++++++ ++el ++l + + + +Rt+g+g l+ e a +++ +
      CTQ29517.1 296 GFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKEDMIQTRQLAQQMRRDVQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNV 390
                     77899****************************************************************************************** PP

                     SSSSGGGT-TTTHHHHSS-SSGGGS-------SSBSHHHHHHHHHHHHHHHHHHHHHHHHT--.S-SB---TTT CS
  Complex1_49kDa  98 GpvlRasGvkyDlRkaepYeaYdeldfdvpvgeegDvydRylvrveEmrqSlkIieqaleklpegpvlaedkkv 171
                     Gp++RasG + D R ++p+ +Y  l ++v  ++ +Dv +R+ vr++E+  +l++i+  l++lp gp+++e  ++
      CTQ29517.1 391 GPMVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDFGLDNLPGGPLMVEGFTY 464
                     *******************************************************************9987655 PP

  == domain 2  score: 40.9 bits;  conditional E-value: 2.1e-14
                     EEEEEEEEETTEEEEEEEEEESSSS-SEEEEE-HHHHTTTTHHHHTTTS-SGGGTHHHHTT---HHHHH- CS
  Complex1_49kDa 202 gevyaavEapkGelgvylvsdgsskpyrlkirapsfvnlqaleellkgellaDvvailgsldivlgevDR 271
                       ++   Eap+G   +  ++ +++k yr+++ra++++n  +l+++l+g++++D++ i+gsld++ +++DR
      CTQ29517.1 468 RFALGFSEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 537
                     5566778*********999999***********************************************9 PP

>> Complex1_30kDa  Respiratory-chain NADH dehydrogenase, 30 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.0   5.1e-31   3.1e-27       2     116 ..      36     152 ..      35     158 .. 0.89

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 5.1e-31
                     E--HHHHHHHHHHHHH...TT--EEEEEEEEETT..SSSEEEEEEEE--S-...-EEEEEE....-S-BEE--TTT-STHHHHHHHHHHHSHHBC CS
  Complex1_30kDa   2 vvepedllevakflkdeeelgfdvlsdltavDek..eerfevvyhllslekn..erirvkvevdeeepevpSvtdlfpgadwyEREayDmfGivf 92 
                     +v+ + l+ev++fl+    ++  +ls l ++De+  +++++v+y+l+ +e+     i+v+vevd+++pe+pSvt+ +p+a w ERE++Dm+G+v 
      CTQ29517.1  36 TVKVNYLPEVVEFLYY---QQGGWLSVLFGNDERklNGHYAVYYVLS-MEQGtkCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDMYGLVP 126
                     789999*********9...4557*********998889999999888.64333477888888899****************************** PP

                     TTSSTSS-SSSSTTS..SS-TTSTTS CS
  Complex1_30kDa  93 eghpdlrrillpedf..eghPLRkdf 116
                      g pd+rr++lp+d+  e +PLRkd 
      CTQ29517.1 127 VGLPDERRLVLPDDWpdELYPLRKDS 152
                     ***************99889****96 PP

>> NiFeSe_Hases  Nickel-dependent hydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.1   1.2e-16   6.9e-13       1      68 [.     218     286 ..     218     291 .. 0.94
   2 ?   -1.4   0.0      0.14   8.4e+02     153     212 ..     301     357 ..     299     366 .. 0.72
   3 ?    2.1   0.0     0.012        72     424     450 ..     470     497 ..     459     506 .. 0.82
   4 ?   -2.0   0.4       0.2   1.2e+03     492     502 ..     524     534 ..     519     535 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 1.2e-16
                   --HHHHTTTS-.GGGHHHHHHTT-SSSTTHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHH CS
  NiFeSe_Hases   1 RGlElilkgrd.prdawalvqRiCGVCttvHalasvravedAlgikipknarlirnliaaalllhdhiv 68 
                   RG+E++ + r   +++++l +R+CG+C  +H++a +++ve+A+gi +p+ a++ir ++  ++ lh+h++
    CTQ29517.1 218 RGMEKLAETRMgYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIVVPERAQMIRAILLEVERLHSHLL 286
                   9******9996267899999***********************************************97 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.14
                   HHHHHHHHHHHTHHHHHHHSSSSS--.EBTTBESSGBGSBSHHHHHHHHHHHHHHHHHHH CS
  NiFeSe_Hases 153 YLeaLelqrkaakivaifggknPhpqslvvGGvtcaidllnaerlaevkslikevkefve 212
                   +++ ++++++ +k+  i++g        ++GG+      l +e + + ++l++++++ v+
    CTQ29517.1 301 FMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRD---LLKEDMIQTRQLAQQMRRDVQ 357
                   678888999999999999888877777899999877...555555666666666665554 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.012
                   EEEEEEETTEEEEEEEEE.ETTEEEEEE CS
  NiFeSe_Hases 424 GvglveapRGaLsHwiki.kdgkienYq 450
                    +g+ eapRG   Hw    +++k+ ++ 
    CTQ29517.1 470 ALGFSEAPRGDDIHWSMTgDNQKLYRWR 497
                   5799***********9884566776665 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.2
                   HHHHT--BHHH CS
  NiFeSe_Hases 492 tihSfDPClAC 502
                   +i S DPC +C
    CTQ29517.1 524 IIGSLDPCYSC 534
                   688******** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4111.25
//
Query:       CTQ29518.1  [L=307]
Description: hydrogenase 3, membrane subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-47  161.0  16.4    4.6e-47  160.8  16.4    1.0  1  NADHdh    NADH dehydrogenase


Domain annotation for each model (and alignments):
>> NADHdh  NADH dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8  16.4   2.6e-51   4.6e-47       5     294 ..       7     301 ..       3     307 .] 0.89

  Alignments for each domain:
  == domain 1  score: 160.8 bits;  conditional E-value: 2.6e-51
                 HHHHHHHHHHH.HHHHHHHHHHHHHTTS--S-SSTTTTTTHHHHHHHHHCCS-----TTS-HHHHHHHHHHHHHHHHCTTTTS-SSSSSS--TT..HHH CS
      NADHdh   5 lllvvlllvva.lltlleRkvlAriqdRlGPnrvGplGllqplaDalKlllKediipkkadkllfllapvlalilallafaviPfgevladlnv..gll 100
                 ll +++l++va ll ++ R   Ar+++R GP      G+lq + D+lKll ++++ p+++  ++f l+p++++ ++l++ +++P+ +v ++l v  +l+
  CTQ29518.1   7 LLQALVLFAVApLLSGIVRVARARLHNRRGP------GVLQEYRDILKLLGRQSVGPDAS-GWVFRLTPYVMVGVMLTIATALPVVTVDSPLPVlgDLI 98 
                 455568999999*******************......********************755.9**********************997556666667*** PP

                 HHHHHHHHCHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SS-HHHHHHCCCTT-C....CCCHHHHHHHHHHHHHHCCTCTTB CS
      NADHdh 101 lilalsslgvygillaGwasnskYallGalRsaaqmisyEvalglsllavvllagslslseiveaqeeiwf....illqllafiifliallaetnraPF 195
                  +++l++++ ++++++G++++s+++ lG+ R+a+  + +E +l+l l + + +ags+++s i+++   +w     i+l +la++++ +a+++e+++ PF
  CTQ29518.1  99 TLIYLFAIARFFFAISGLDTGSPFTALGSSREAMLGVLVEPILLLGLWVAAQVAGSTHISAITDTLY-HWPaarsIPL-ILALCACAFATFIEMGKLPF 195
                 **************************************************************87664.5645787888.9******************* PP

                 TTTTSTTSSSSCCCTT-HCHHHHHHHHHHHHHHHHHHHHHHHHCT..SS-HCCS......HHHHHHHHHHHHHHHHHHHHHC----TCHHHHHHHCCTC CS
      NADHdh 196 DlpeaesELvaGfhtEYsgmkfalfflaeyanmvlvsalavllFl.gGwllpfs......gllwfllKvllllflfiwiratlpRlRydqlmklgwkvl 287
                 Dl+eae+EL +G+  EYsg  f+++ ++  ++ ++v  ++v +F+  G ++ fs       l++ ++K+++ ++++++++++++RlR+  + +++w  +
  CTQ29518.1 196 DLAEAEQELQEGPLSEYSGSGFGILKWGISLKQLVVLQMFVGVFFpWGQMTSFSvgglllALVVAIVKLVVGVLIIALFENSMARLRFCATSRVTWAGF 294
                 *****************************9999999888888888133344444999999999*********************************976 PP

                 HHHHHHH CS
      NADHdh 288 lplalan 294
                     la+
  CTQ29518.1 295 GFAFLAF 301
                 5544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2418.62
//
Query:       CTQ29519.1  [L=608]
Description: hydrogenase 3, membrane subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-37  127.8  24.4    4.7e-37  127.8  24.4    2.2  2  Proton_antipo_M  Proton-conducting membrane transporter
     0.0082   16.3   0.2      0.088   13.0   0.2    2.8  1  DUF2985          Protein of unknown function (DUF2985)


Domain annotation for each model (and alignments):
>> Proton_antipo_M  Proton-conducting membrane transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8  24.4   5.2e-41   4.7e-37      33     281 ..     150     405 ..     126     414 .. 0.88
   2 ?   -2.6   0.5      0.28   2.5e+03     116     131 ..     461     476 ..     427     513 .. 0.63

  Alignments for each domain:
  == domain 1  score: 127.8 bits;  conditional E-value: 5.2e-41
  Proton_antipo_M  33 eAslklflltllgsliLLlgilllynltgtlefeelskalelglnslelllllllllvgllvKsaqvplhlWlpdayveaPtpvsallAatlvk 126
                      +++   f l++lg l++   + l+++  gtle+ ++ ++   +++ +++ ll l  lvg+++ ++++plh W p+a+ +a++p  al++ +++k
       CTQ29519.1 150 ASGKLWFALGRLGTLLMAWTCWLVWSTYGTLELAQINLQ---AVDMMQNPLLWLPGLVGFALLAGAIPLHGWAPQAHAGASAPAAALFSTVVMK 240
                      56778899******************************9...6777777777888899************************************ PP

  Proton_antipo_M 127 agvlllirlllllavssneisqlllilaiismllgslvalaqtdiKrllAySsishlGymlialav.....at......qygveaaiihlltha 209
                      +g++++++++l   v   ++  +ll+l++i++++g+l al + +i+rllAy ++  +G++l++l++     at      + g+ + + hl+ h+
       CTQ29519.1 241 VGLYGMLTVSLAGGVPPLWWGVMLLALGMITAFIGGLYALMEHNIQRLLAYHTLENIGIILLGLGAfvtgvATrnstlmVLGFIGGMYHLINHS 334
                      *******99999889999********************************************99876543322112222347788899****** PP

  Proton_antipo_M 210 lfkallFllagsviyerektrdirayggLakkmPilalvllvlllslaGlPptagFlskfliLeaavavsli 281
                      lfk +lFl ag+v  ++   rdi+++gg+ kkmP+++l++lv+l+++a+lPp+ gF +++ i ++ +++s+ 
       CTQ29519.1 335 LFKTTLFLGAGAVWFRT-GHRDIEKLGGIGKKMPLISLAMLVGLMAMAALPPLNGFAGEWVIYQSFFKMSTG 405
                      **********9996655.99***********************************************99875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.28
  Proton_antipo_M 116 vsallAatlvkagvll 131
                       s+ lAa+   +g+++
       CTQ29519.1 461 LSVVLAAVFCLVGGIA 476
                      2444444444444444 PP

>> DUF2985  Protein of unknown function (DUF2985)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   9.9e-06     0.088      27      68 ..     421     480 ..     409     482 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.9e-06
     DUF2985  27 LlLlgaapamn..................insarkkwieidsqilnALFcvtgfglaPwr 68 
                 L ++ga+ +m+                   n +   w+   s +l A Fc++g   aPw 
  CTQ29519.1 421 LAITGALAVMCmakvygvtflgaprtkeaENATCAPWLMTLSVVLAAVFCLVGGIAAPWL 480
                 445555555555555555558898888766688899***********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 4739.10
//
Query:       CTQ29520.1  [L=202]
Description: hydrogenase 3, Fe-S subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-13   51.4  23.7    1.6e-05   25.4  13.3    3.2  3  Fer4_7    4Fe-4S dicluster domain
    1.4e-11   43.9  33.0     0.0017   18.3   1.1    4.6  4  Fer4_6    4Fe-4S binding domain
    4.6e-11   42.0  37.7    9.7e-07   28.4   1.3    5.3  6  Fer4      4Fe-4S binding domain
    9.6e-11   42.5  16.5     0.0068   17.3   0.7    4.4  4  Fer4_16   4Fe-4S double cluster binding domain
    8.1e-10   38.7  26.5    1.3e-05   25.3  12.0    3.1  4  Fer4_9    4Fe-4S dicluster domain
    1.5e-09   37.9  17.4    8.6e-08   32.2   4.8    2.8  3  Fer4_11   4Fe-4S dicluster domain
    9.9e-07   28.8  30.7      0.055   13.6   8.9    4.0  4  Fer4_10   4Fe-4S dicluster domain
    1.7e-05   24.6  34.3       0.02   14.9   3.2    4.3  4  Fer4_2    4Fe-4S binding domain
    1.8e-05   24.8  31.4     0.0026   17.9  12.4    3.8  3  Fer4_21   4Fe-4S dicluster domain
    5.7e-05   23.8  42.1       0.13   13.3   7.0    4.3  4  Fer4_3    4Fe-4S binding domain
    0.00077   19.9  27.8     0.0031   17.9  12.4    3.0  3  Fer4_8    4Fe-4S dicluster domain
     0.0011   19.3  33.7     0.0057   17.1   1.8    4.7  4  Fer4_4    4Fe-4S binding domain
     0.0042   17.6  26.7        1.1    9.9  12.5    3.8  3  Fer4_17   4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.015   15.4  12.0       0.02   15.0   3.3    2.9  3  ETF_QO    Electron transfer flavoprotein-ubiquinone oxidoredu
      0.021   14.7   1.9        3.2    7.8   0.5    2.5  2  Fer4_5    4Fe-4S binding domain
        1.1    9.8  24.3        2.8    8.6   0.9    3.4  3  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I
          3    8.7  19.9       0.98   10.2   7.3    3.7  3  Fer4_15   4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4  13.3   1.5e-08   1.6e-05       2      52 .]      12      67 ..      11      67 .. 0.72
   2 !   18.1   0.2     3e-06    0.0031       2      20 ..      82     100 ..      73     128 .. 0.83
   3 !   14.5   0.3   3.9e-05     0.041       1      26 [.     142     173 ..     140     188 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.5e-08
      Fer4_7  2 CigCgaCvaaCp....vkaieldeeenekgtekveidpekClgCga..CvavCPtga 52
                CigC+ C+aaC+    ++ ++  ++ +  +  + e  p++C +C+   C++vCP++a
  CTQ29520.1 12 CIGCRTCEAACSethrQHGLQAMPRLQVMR-NEKESAPQMCHHCEDapCATVCPVNA 67
                ***********8433333334444433333.4456789*******999*******97 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 3e-06
      Fer4_7   2 CigCgaCvaaCpvkaield 20 
                 C+ C+ C  aCp +aie+ 
  CTQ29520.1  82 CVSCKLCGIACPFGAIEFS 100
                 8888888888888888876 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 3.9e-05
      Fer4_7   1 rCigCg......aCvaaCpvkaieldeeenek 26 
                 +C  C+      aCv++Cp++a++l ++ + +
  CTQ29520.1 142 KCDLCHfddqgpACVRTCPTNALMLVDSRDIA 173
                 688897777777************98765544 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.2     2e-06    0.0021       4      21 ..       7      24 ..       4      30 .. 0.85
   2 !   15.2   4.5   1.6e-05     0.017       6      24 .]      48      68 ..      46      68 .. 0.94
   3 !   18.3   1.1   1.6e-06    0.0017       5      24 .]      78      97 ..      75      97 .. 0.95
   4 !    8.7   4.0    0.0018       1.9       8      24 .]     142     164 ..     136     164 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2e-06
      Fer4_6  4 idpdkCigCgdCvrvCPe 21
                 d   CigC+ C+++C e
  CTQ29520.1  7 ADSTVCIGCRTCEAACSE 24
                67778***********86 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.6e-05
      Fer4_6  6 pdkCigCgd..CvrvCPegai 24
                p+ C +C+d  C++vCP +ai
  CTQ29520.1 48 PQMCHHCEDapCATVCPVNAI 68
                789****999*********98 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 1.6e-06
      Fer4_6  5 dpdkCigCgdCvrvCPegai 24
                ++++C++C  C ++CP+gai
  CTQ29520.1 78 NESLCVSCKLCGIACPFGAI 97
                799****************8 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0018
      Fer4_6   8 kCigC.gd.....CvrvCPegai 24 
                 kC+ C  d     Cvr CP++a+
  CTQ29520.1 142 KCDLChFDdqgpaCVRTCPTNAL 164
                 7887766677778********97 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   4.3   6.5e-05     0.068       4      18 ..       8      22 ..       5      23 .. 0.89
   2 ?   -1.3   0.1       2.1   2.2e+03       7      11 ..      50      54 ..      48      57 .. 0.61
   3 !   12.0   2.1   0.00014      0.14      14      24 .]      59      69 ..      58      69 .. 0.95
   4 !   28.4   1.3   9.2e-10   9.7e-07       2      24 .]      76      98 ..      75      98 .. 0.93
   5 ?   -1.6   0.2       2.6   2.7e+03       7      14 ..     142     146 ..     141     147 .. 0.52
   6 !   11.0   0.3   0.00028      0.29      13      23 ..     154     164 ..     154     165 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.5e-05
                ETTTSSS-THHHHHS CS
        Fer4  4 deekCigCGaCvevC 18
                d   CigC +C+ +C
  CTQ29520.1  8 DSTVCIGCRTCEAAC 22
                7789*********** PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.1
                TSSS- CS
        Fer4  7 kCigC 11
                +C +C
  CTQ29520.1 50 MCHHC 54
                56666 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00014
                HHHHSTTTEEE CS
        Fer4 14 CvevCPvgAIt 24
                C+ vCPv+AI+
  CTQ29520.1 59 CATVCPVNAIQ 69
                *********95 PP

  == domain 4  score: 28.4 bits;  conditional E-value: 9.2e-10
                EEETTTSSS-THHHHHSTTTEEE CS
        Fer4  2 videekCigCGaCvevCPvgAIt 24
                + +e++C+ C++C  +CP+gAI+
  CTQ29520.1 76 QLNESLCVSCKLCGIACPFGAIE 98
                679*******************6 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 2.6
                 TSSS-THH CS
        Fer4   7 kCigCGaC 14 
                 k   C +C
  CTQ29520.1 142 K---CDLC 146
                 4...5555 PP

  == domain 6  score: 11.0 bits;  conditional E-value: 0.00028
                 HHHHHSTTTEE CS
        Fer4  13 aCvevCPvgAI 23 
                 aCv  CP++A+
  CTQ29520.1 154 ACVRTCPTNAL 164
                 7*********7 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.6    0.0037       3.9       2      13 ..      12      23 ..       5      46 .. 0.80
   2 !   14.4   1.7   5.1e-05     0.054       2      20 ..      51      71 ..      50      80 .. 0.84
   3 !   17.3   0.7   6.4e-06    0.0068       2      33 ..      82     113 ..      81     148 .. 0.75
   4 !   10.6   0.0   0.00083      0.87       7      30 ..     154     177 ..     151     198 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0037
     Fer4_16  2 CgtCgkCaevCP 13
                C++C+ C  +C 
  CTQ29520.1 12 CIGCRTCEAACS 23
                666666666665 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 5.1e-05
     Fer4_16  2 CgtCgk..CaevCPtnaikek 20
                C+ C+   Ca vCP+nai+  
  CTQ29520.1 51 CHHCEDapCATVCPVNAIQRV 71
                9***9999**********976 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 6.4e-06
     Fer4_16   2 CgtCgkCaevCPtnaikekkekeiearecisy 33 
                 C++C+ C  +CP +ai+   ++ ++++++ ++
  CTQ29520.1  82 CVSCKLCGIACPFGAIEFSGSRPLDIPANANT 113
                 *****************998888888887666 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00083
     Fer4_16   7 kCaevCPtnaikekkekeiearec 30 
                 +C+ +CPtna+    ++ i++  +
  CTQ29520.1 154 ACVRTCPTNALMLVDSRDIAQASK 177
                 7*********99885555544433 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3  12.0   1.2e-08   1.3e-05       2      51 .]      12      68 ..      11      68 .. 0.83
   2 !   12.8   1.1   9.2e-05     0.097      32      51 .]      78      97 ..      69      97 .. 0.77
   3 !   13.9   8.5   4.3e-05     0.045       2      50 ..      82     163 ..      81     164 .. 0.91
   4 !    8.8   0.9    0.0018       1.8       1      28 [.     142     175 ..     142     182 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.2e-08
      Fer4_9  2 CtgCgaCveaCpagvvvedaaerkarlraase.....eaCigCga..CveaCpkgai 51
                C+gC++C++aC  ++ +   ++  + + +++e     + C++C++  C+ +Cp +ai
  CTQ29520.1 12 CIGCRTCEAACSETHRQHGLQAMPRLQVMRNEkesapQMCHHCEDapCATVCPVNAI 68
                ***********8777777766666666666666688999**************9987 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 9.2e-05
      Fer4_9 32 seeaCigCgaCveaCpkgai 51
                +e+ C++C+ C  aCp gai
  CTQ29520.1 78 NESLCVSCKLCGIACPFGAI 97
                34689999999999999887 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 4.3e-05
      Fer4_9   2 CtgCgaCveaCpagvvvedaaerkarlraase...........................eaCigCga......CveaCpkga 50 
                 C++C+ C  aCp+g+++ + ++  +   +a+                             +C  C+       Cv  Cp++a
  CTQ29520.1  82 CVSCKLCGIACPFGAIEFSGSRPLDIPANANTrlappappaparvsslldwvpgvraiaVKCDLCHFddqgpaCVRTCPTNA 163
                 ****************9888888877776666889************************99****99999999******997 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0018
      Fer4_9   1 kCtgC......gaCveaCpagvvvedaaerkarl 28 
                 kC  C       aCv+ Cp+++ +  +++ +a+ 
  CTQ29520.1 142 KCDLChfddqgPACVRTCPTNALMLVDSRDIAQA 175
                 6888855544334999999999988887777665 PP

>> Fer4_11  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4       1.7   1.7e+03      10      20 ..      15      24 ..       4      39 .. 0.60
   2 !   32.2   4.8   8.1e-11   8.6e-08       6      59 ..      47      97 ..      42     103 .. 0.90
   3 !   14.2   0.3   3.5e-05     0.037      67      99 ..     139     168 ..     134     169 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.7
     Fer4_11 10 CrhCleppCva 20
                Cr C+ ++C +
  CTQ29520.1 15 CRTCE-AACSE 24
                44442.34444 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 8.1e-11
     Fer4_11  6 lpeqCrhCleppCvasapseaivkdeetGaVlldektkkeevrevveacPykiv 59
                 p++C+hC+++pC++++p++ai +   +GaV l+e+ +  +++ +  acP+ ++
  CTQ29520.1 47 APQMCHHCEDAPCATVCPVNAIQRV--DGAVQLNESLCV-SCKLCGIACPFGAI 97
                69*****************999764..6**********7.***********876 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 3.5e-05
     Fer4_11  67 kvekCdmcldrveaGllpacvescptgalnfgd 99 
                  + kCd+c    +    pacv++cpt+al++ d
  CTQ29520.1 139 IAVKCDLCHFDDQ---GPACVRTCPTNALMLVD 168
                 578*****87665...7***********99875 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2  15.4   6.8e-05     0.071       2      56 .]       5      64 ..       4      64 .. 0.78
   2 !   10.9  13.6   0.00035      0.37       6      56 .]      48      93 ..      43      93 .. 0.89
   3 !   13.6   8.9   5.2e-05     0.055       2      56 .]      75     160 ..      74     160 .. 0.82
   4 !    7.1   1.5    0.0055       5.8       9      21 ..     143     161 ..     135     186 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.8e-05
     Fer4_10  2 vvidddtCirCgkCvkaCPadl...tsvgakgeaseeeavrkkvekCtgcg..aCveaCP 56
                v+ d+  Ci+C++C +aC  ++     +     +   ++++ +++ C++c+   C+ +CP
  CTQ29520.1  5 VIADSTVCIGCRTCEAACSETHrqhGLQAMPRLQVMRNEKESAPQMCHHCEdaPCATVCP 64
                6789999***********4444765445555566667777779*******777******9 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00035
     Fer4_10  6 ddtCirCg..kCvkaCPadltsvgakgeaseeeavrkkvekCtgcgaCveaCP 56
                ++ C +C+   C ++CP+       ++++  ++av+ + + C  c  C  aCP
  CTQ29520.1 48 PQMCHHCEdaPCATVCPV-------NAIQRVDGAVQLNESLCVSCKLCGIACP 93
                788*****999*******.......8888888888888999999999999999 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 5.2e-05
     Fer4_10   2 vvidddtCirCgkCvkaCPadl.........................tsvgakgeaseeeavrkkvekCtgcg......aCveaCP 56 
                 v+++++ C+ C+ C  aCP+ +                            +++   +    vr    kC+ c       aCv+ CP
  CTQ29520.1  75 VQLNESLCVSCKLCGIACPFGAiefsgsrpldipanantrlappappAPARVSSLLDWVPGVRAIAVKCDLCHfddqgpACVRTCP 160
                 678999**************99***********************9955555555555555666677888884455668******9 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0055
     Fer4_10   9 CirCg......kCvkaCPa 21 
                 C  C       +Cv+ CP+
  CTQ29520.1 143 CDLCHfddqgpACVRTCPT 161
                 3333333333356666666 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   3.2   1.9e-05      0.02       3      20 ..       5      22 ..       3      24 .. 0.87
   2 !    7.1   5.4     0.006       6.3       7      21 ..      48      64 ..      47      65 .. 0.89
   3 !   13.9   1.0   4.2e-05     0.045       3      21 ..      75      93 ..      73      94 .. 0.91
   4 ?    5.9   2.4     0.015        15       9      22 .]     142     161 ..     137     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.9e-05
      Fer4_2  3 vvvdtdrCigCgaCvsaC 20
                v +d+  CigC++C  aC
  CTQ29520.1  5 VIADSTVCIGCRTCEAAC 22
                568999************ PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.006
      Fer4_2  7 tdrCigCg..aCvsaCP 21
                +++C +C+  +C ++CP
  CTQ29520.1 48 PQMCHHCEdaPCATVCP 64
                67999**889******* PP

  == domain 3  score: 13.9 bits;  conditional E-value: 4.2e-05
      Fer4_2  3 vvvdtdrCigCgaCvsaCP 21
                v+ ++  C++C+ C  aCP
  CTQ29520.1 75 VQLNESLCVSCKLCGIACP 93
                7899*************** PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.015
      Fer4_2   9 rCigCg......aCvsaCPa 22 
                 +C  C       aCv  CP+
  CTQ29520.1 142 KCDLCHfddqgpACVRTCPT 161
                 799996677779*******7 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6  12.3     3e-06    0.0031       4      58 ..       8      69 ..       5      71 .. 0.68
   2 !   17.9  12.4   2.4e-06    0.0026       6      58 ..      49      98 ..      47      99 .. 0.79
   3 ?    0.4   2.5      0.69   7.3e+02      47      53 ..     155     161 ..     136     181 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3e-06
     Fer4_21  4 dedkCigCgkCliaCedtshqai.......eidaktvlkvvedeCvGCn..lCssvCPvedcie 58
                d+  CigC  C  aC++t  q         ++  ++  +   + C  C+   C++vCPv ++i+
  CTQ29520.1  8 DSTVCIGCRTCEAACSETHRQHGlqamprlQV-MRNEKESAPQMCHHCEdaPCATVCPV-NAIQ 69
                6788************9865532222243222.2233355678999997336******9.8885 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 2.4e-06
     Fer4_21  6 dkCigCgk..CliaCedtshqaieidaktvlkvvedeCvGCnlCssvCPvedcie 58
                ++C +C+   C+++C+ +++q +++     +++ e+ Cv C+lC + CP  ++ie
  CTQ29520.1 49 QMCHHCEDapCATVCPVNAIQRVDG----AVQLNESLCVSCKLCGIACPF-GAIE 98
                7899997555******655555444....46899***************7.8886 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.69
     Fer4_21  47 CssvCPv 53 
                 C+  CP+
  CTQ29520.1 155 CVRTCPT 161
                 4444443 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   4.0    0.0032       3.4       1      11 [.      12      22 ..      12      25 .. 0.94
   2 !   13.3   7.0   0.00012      0.13       1      15 []      51      67 ..      51      67 .. 0.93
   3 ?    7.0   4.8     0.012        13       1      15 []      82      96 ..      82      96 .. 0.97
   4 !   13.3   2.7   0.00012      0.13       1      15 []     143     163 ..     143     163 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0032
      Fer4_3  1 CtgCgaCvevC 11
                C+gC++C+ +C
  CTQ29520.1 12 CIGCRTCEAAC 22
                *********** PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00012
      Fer4_3  1 CtgCg..aCvevCPvgA 15
                C++C+  +C  vCPv+A
  CTQ29520.1 51 CHHCEdaPCATVCPVNA 67
                ****8778*******99 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.012
      Fer4_3  1 CtgCgaCvevCPvgA 15
                C+ C +C  +CP gA
  CTQ29520.1 82 CVSCKLCGIACPFGA 96
                99***********98 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 0.00012
      Fer4_3   1 CtgCg......aCvevCPvgA 15 
                 C+ C       aCv+ CP++A
  CTQ29520.1 143 CDLCHfddqgpACVRTCPTNA 163
                 9***8889999********98 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9  12.4     3e-06    0.0031       4      64 ..      11      66 ..       8      67 .. 0.71
   2 ?    5.2   8.1     0.027        28       5      64 ..      82     162 ..      79     163 .. 0.60
   3 ?    1.9   1.5       0.3   3.2e+02      10      64 ..     154     162 ..     139     192 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3e-06
      Fer4_8  4 kCieCgaCqsaCpvlrrtkkhlldargeaaedvqeeqvleeeealwsCttcga..CtevCpvg 64
                 Ci+C  C++aC   +r+      +r +++  +++e       a + C++c+   C++vCpv+
  CTQ29520.1 11 VCIGCRTCEAACSETHRQHGLQAMPRLQVMR-NEKE------SAPQMCHHCEDapCATVCPVN 66
                6***********5444444444444444444.3333......569*******999******97 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.027
      Fer4_8   5 CieCgaCqsaCp..vlrrtkkhlldargeaae...........dvqeeqvlee....eealwsCttcga......CtevCpvg 64 
                 C+ C +C  aCp  +++ ++ ++ld + +a+            +   +  l+     + ++ +C  c+       C++ Cp++
  CTQ29520.1  82 CVSCKLCGIACPfgAIEFSGSRPLDIPANANTrlappappapaR--VSSLLDWvpgvRAIAVKCDLCHFddqgpaCVRTCPTN 162
                 99999999999955222233455555555444445566665431..2222222556788888888888666677799999986 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.3
      Fer4_8  10 aCqsaCpvlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvg 64 
                 aC  +Cp                                              ++
  CTQ29520.1 154 ACVRTCP----------------------------------------------TN 162
                 4446666..............................................32 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.8   5.4e-06    0.0057       3      15 ..      11      23 ..       7      32 .. 0.90
   2 ?    4.7   2.7     0.051        54       2      17 .]      49      66 ..      48      70 .. 0.87
   3 !    9.6   2.4    0.0013       1.4       3      17 .]      81      95 ..      79      95 .. 0.90
   4 ?    4.4   4.0     0.063        66       8      17 .]     153     162 ..     140     162 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.4e-06
      Fer4_4  3 rCigCgsCvaaCP 15
                 CigC+ C+aaC+
  CTQ29520.1 11 VCIGCRTCEAACS 23
                5***********7 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.051
      Fer4_4  2 erCigCgs..CvaaCPqg 17
                + C +C    C  +CP++
  CTQ29520.1 49 QMCHHCEDapCATVCPVN 66
                78*****779******75 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0013
      Fer4_4  3 rCigCgsCvaaCPqg 17
                 C+ C+ C +aCP+g
  CTQ29520.1 81 LCVSCKLCGIACPFG 95
                5************86 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.063
      Fer4_4   8 gsCvaaCPqg 17 
                 ++Cv++CP++
  CTQ29520.1 153 PACVRTCPTN 162
                 47******86 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9  12.5     0.001       1.1       2      58 ..      12      65 ..      11      68 .. 0.74
   2 ?    2.4  12.2      0.21   2.3e+02       2      58 ..      51      94 ..      50      96 .. 0.60
   3 ?    4.3   0.1     0.056        59       7      28 ..     154     175 ..     142     193 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
     Fer4_17  2 CiqCgyClpeCpsyeaydnepkkllraaklglleeaekeekaslCieCge..CerkCPq 58
                Ci+C+ C+++C+   +    +++++ +++ +     eke++ + C++C+   C+++CP 
  CTQ29520.1 12 CIGCRTCEAACSETHRQHGLQAMPRLQVMRN-----EKESAPQMCHHCEDapCATVCPV 65
                ************9888776666666664443.....3456778888887555******6 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.21
     Fer4_17  2 CiqCgy..ClpeCpsyeaydnepkkllraaklglleeaekeekaslCieCgeCerkCPq 58
                C++C+   C+ +Cp +++ +        a++l          + slC++C++C  +CP 
  CTQ29520.1 51 CHHCEDapCATVCPVNAIQRV-----DGAVQL----------NESLCVSCKLCGIACPF 94
                555554455555555555333.....222222..........3379************6 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.056
     Fer4_17   7 yClpeCpsyeaydnepkkllra 28 
                 +C++ Cp+++ +  + + +++a
  CTQ29520.1 154 ACVRTCPTNALMLVDSRDIAQA 175
                 4999999888766655555544 PP

>> ETF_QO  Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.3     0.036        38      68      83 ..       4      20 ..       1      30 [. 0.76
   2 ?   15.0   3.3   1.9e-05      0.02      23      93 ..      34     100 ..      20     108 .. 0.75
   3 ?   -0.7   0.0       1.5   1.5e+03      45      62 ..     154     171 ..     137     186 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.036
                EEE.-CCC--S--HHHH CS
      ETF_QO 68 lqi.naqnCvhCktCdi 83
                ++i +++ C+ C+tC+ 
  CTQ29520.1  4 FVIaDSTVCIGCRTCEA 20
                55525789*******96 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.9e-05
                 --SEEES..STTHHHHTHHHHHS-THHHH-TTS-EEEEETTTTSSEEEEE-CCC--S--HHHHH-TT--EEE- CS
      ETF_QO  23 pvhLklk..daevavkvnlekyagpeqryCPagvyeivedeeakekklqinaqnCvhCktCdikdpsqniewv 93 
                    L++   ++e a +++++  ++p++ +CP +  + v+        +q+n + Cv Ck C i  p   ie++
  CTQ29520.1  34 MPRLQVMrnEKESAPQMCHHCEDAPCATVCPVNAIQRVDG------AVQLNESLCVSCKLCGIACPFGAIEFS 100
                 4556665334455667777778899999999887766644......589*****************9999985 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.5
                 THHHH-TTS-EEEEETTT CS
      ETF_QO  45 peqryCPagvyeivedee 62 
                  + r CP +   +v++ +
  CTQ29520.1 154 ACVRTCPTNALMLVDSRD 171
                 467888888877776554 PP

>> Fer4_5  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.013        14      24      35 ..      59      70 ..      59      72 .. 0.91
   2 ?    7.8   0.5     0.003       3.2      24      33 ..      88      97 ..      88      98 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.013
      Fer4_5 24 CgWiCPfGalqe 35
                C  +CP++a+q 
  CTQ29520.1 59 CATVCPVNAIQR 70
                999*******96 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.003
      Fer4_5 24 CgWiCPfGal 33
                Cg +CPfGa+
  CTQ29520.1 88 CGIACPFGAI 97
                ********97 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  11.0    0.0028       2.9       2      57 ..       8      69 ..       7      70 .. 0.78
   2 ?    8.6   0.9    0.0026       2.8       2      17 ..      78      93 ..      77      94 .. 0.90
   3 ?    0.2   0.2       1.1   1.1e+03      12      54 ..     155     162 ..     152     165 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0028
     Fer4_13  2 DrdtCiacgaCvelaPdvFeeddeggasvvae....qptseeekadaeeA..adaCPvesIg 57
                D   Ci+c +C +++ ++ +    + + + +     +++ +++ +++e+A  a  CPv++I+
  CTQ29520.1  8 DSTVCIGCRTCEAACSETHRQHGLQAMPRLQVmrneKESAPQMCHHCEDApcATVCPVNAIQ 69
                5677****************99987766554322223444888999***977888******6 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0026
     Fer4_13  2 DrdtCiacgaCvelaP 17
                +++ C++c++C+ ++P
  CTQ29520.1 78 NESLCVSCKLCGIACP 93
                5678***********9 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.1
     Fer4_13  12 CvelaPdvFeeddeggasvvaeqptseeekadaeeAadaCPve 54 
                 Cv ++P                                   ++
  CTQ29520.1 155 CVRTCP-----------------------------------TN 162
                 555555...................................54 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   7.3   0.00093      0.98       2      65 ..       6      69 ..       5      69 .. 0.80
   2 ?    3.1   1.8      0.16   1.7e+02       1      19 [.      75      93 ..      75      99 .. 0.80
   3 ?    1.1   0.1      0.63   6.6e+02      15      64 ..     156     164 ..     142     197 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00093
     Fer4_15  2 vvDrdaCigcglCvaeapevfelde.dglasvllddgeiaegevpddeeeaaqeA..araCPvdAIr 65
                  D + Cigc  C a+++e  ++++ + ++++      ++e+e ++++  + ++A  a +CPv AI+
  CTQ29520.1  6 IADSTVCIGCRTCEAACSETHRQHGlQAMPRLQ---VMRNEKESAPQMCHHCEDApcATVCPVNAIQ 69
                569999************999999655555555...56677888888888888887799******95 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.16
     Fer4_15  1 VvvDrdaCigcglCvaeap 19
                V +++++C +c lC  ++p
  CTQ29520.1 75 VQLNESLCVSCKLCGIACP 93
                6678899999999988876 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.63
     Fer4_15  15 vaeapevfeldedglasvllddgeiaegevpddeeeaaqeAaraCPvdAI 64 
                 v                                         r+CP+ A+
  CTQ29520.1 156 V-----------------------------------------RTCPTNAL 164
                 4.........................................55555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1630.29
//
Query:       CTQ29521.1  [L=149]
Description: regulator of the transcriptional regulator FhlA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-74  247.5   0.6    5.1e-74  247.3   0.6    1.0  1  HycA_repressor  Transcriptional repressor of hyc and hyp oper


Domain annotation for each model (and alignments):
>> HycA_repressor  Transcriptional repressor of hyc and hyp operons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.3   0.6   2.9e-78   5.1e-74       1     145 [.       1     145 [.       1     146 [. 0.99

  Alignments for each domain:
  == domain 1  score: 247.3 bits;  conditional E-value: 2.9e-78
  HycA_repressor   1 mtiselsekaeyiadknrklqaqWktyknslvqaitlskaklhhelsCapdeelrfvlfehfvveielaegfnsktieyllelkdgeekvllara 95 
                     mti+e+seka+yiad++r++q+qW++y+nslvq+itlska+lhh++sCapd+el+fvlf hf+v ++laegfns+tiey++e+k+g +k+l+a+a
      CTQ29521.1   1 MTIWEISEKADYIADRHRQQQEQWHIYCNSLVQGITLSKARLHHAMSCAPDKELCFVLFGHFQVFVALAEGFNSHTIEYYVENKNGGDKYLIAQA 95 
                     9********************************************************************************************** PP

  HycA_repressor  96 tldeeGlldgsvdirdrdavlehylekisavydslydalkedqPlelsel 145
                     tl+++G++dg++++r+rd+vlehyl++i++vyd+lyda+++dqP++ls+l
      CTQ29521.1  96 TLAMDGTVDGRISNRSRDQVLEHYLAIIATVYDRLYDAMEQDQPVDLSHL 145
                     ***********************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1150.01
//
Query:       CTQ29522.1  [L=114]
Description: protein involved in nickel insertion into hydrogenases 3 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-29  100.1   6.5    7.6e-29  100.0   6.5    1.0  1  HypA           Hydrogenase/urease nickel incorporation, metal
  ------ inclusion threshold ------
      0.064   13.5   8.2       0.14   12.4   8.2    1.6  1  zinc_ribbon_9  zinc-ribbon


Domain annotation for each model (and alignments):
>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0   6.5   8.4e-33   7.6e-29       1     111 [.       1     112 [.       1     113 [. 0.96

  Alignments for each domain:
  == domain 1  score: 100.0 bits;  conditional E-value: 8.4e-33
                 XCHHHHHHHHHHHHHHHHCCTT..EEEEEEEEEETTCT--HHHHHHHHHHHHCC.TTTT-EEEEEEE--EEEETTTS-EEECHHH.HHS-TTTSSS-EE CS
        HypA   1 MHElsiaesivevveeeakeaaarkvtkvkvevGelsgvepeaLefafellaegtvlegaeLeieevpvkvrCreCgkefeleek.alrCpkCgsadve 98 
                 MHE+ + ++ +e++e++a++a+ar+vt v+++vG++s+ve +aL+f+fel+++gt++eg+eL+i e++++++C++C++ ++l ++   rCp+C++ +++
  CTQ29522.1   1 MHEITLSQRALEIIEQQAQQAGARRVTGVWLKVGAFSCVEASALTFCFELVCRGTLAEGCELHIAEQQAECWCDRCQQYVHLVSQhVRRCPHCNNDQLQ 99 
                 *********************************************************************************77654779********** PP

                 EEESSSEEEEEEE CS
        HypA  99 ivsGeellvksie 111
                 iv+ ++l+++++e
  CTQ29522.1 100 IVADDGLQIQRLE 112
                 **********998 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   8.2   1.6e-05      0.14       4      30 ..      72      96 ..      69     100 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.6e-05
  zinc_ribbon_9  4 WChqCdrfVsvspdedsdvlCPhCggg 30
                   WC +C++ V++  +++    CPhC+++
     CTQ29522.1 72 WCDRCQQYVHLV-SQHVRR-CPHCNND 96
                   **********95.567777.****985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 911.06
//
Query:       CTQ29523.1  [L=290]
Description: GTP hydrolase involved in nickel liganding into hydrogenases [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-35  119.8   0.0    1.3e-34  119.4   0.0    1.1  1  cobW        CobW/HypB/UreG, nucleotide-binding domain
     0.0055   16.0   0.0     0.0073   15.6   0.0    1.2  1  Zeta_toxin  Zeta toxin
  ------ inclusion threshold ------
      0.012   15.1   0.0      0.054   12.9   0.0    1.9  2  Arf         ADP-ribosylation factor family
      0.013   15.9   0.0      0.021   15.2   0.0    1.4  1  AAA_16      AAA ATPase domain
      0.043   14.2   0.0       0.06   13.7   0.0    1.4  1  AAA_19      AAA domain
      0.046   13.6   0.1       0.11   12.4   0.1    1.8  1  MobB        Molybdopterin guanine dinucleotide synthesis prot
      0.079   12.0   0.0       0.11   11.5   0.0    1.2  1  T2SSE       Type II/IV secretion system protein


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.0   4.9e-38   1.3e-34       2     176 ..     106     267 ..     105     268 .. 0.93

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 4.9e-38
                 EEEEEESTTCCHHHHHHHHH.CT--SS-EEEEESS-SSCHCCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHH.TT-SEEEEEECT.TTTHH CS
        cobW   2 vtvltGflGsGKTtLlnhll.enraglklavivNefgevsiDaellretgveivelenGciCctlredllkelealeere.erldviliEttG.laePa 97 
                 v++l++++GsGKTtLl+++l + +   ++avi+++++ +  Da+++r+tg++++++++G+ C+    d+++ ++a  +++ ++  +++iE++G l++Pa
  CTQ29523.1 106 VLNLVSSPGSGKTTLLTETLtRLKGRADCAVIEGDQQ-TVNDAARIRATGTPAIQVNTGKGCHL---DAQMIADAAPRLPlADRGILFIENVGnLVCPA 200
                 789****************978888899*********.999***********************...7777777776666556789************* PP

                 HHHTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC...HHHHHHHHHHHHTTS-EE CS
        cobW  98 pvafteeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldee.allekleerlrqlnpeakvl 176
                            dl + ++vav+++    +e+e+++ k+++++aaa+l++lnK+Dll++  +++e++ + +r++np+ +++
  CTQ29523.1 201 SF---------DLGERHKVAVLSV----TEGEDKPLKYPHMFAAASLMLLNKVDLLPYLnFDVERCLACAREVNPHIEII 267
                 **.........*************....9***********************************************9986 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.8e-06    0.0073      13      53 ..     101     141 ..      88     177 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.8e-06
  Zeta_toxin  13 qerPklillgGqpGAGKselaellkdelerqgnvvrldpDd 53 
                  ++  ++ l+ +pG+GK++l++++ ++l+ + ++ ++++D+
  CTQ29523.1 101 AKQQLVLNLVSSPGSGKTTLLTETLTRLKGRADCAVIEGDQ 141
                 45666677999******************9*********97 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.33   8.3e+02      24      33 ..     114     123 ..      96     129 .. 0.76
   2 ?   12.9   0.0   2.1e-05     0.054     114     173 ..     229     286 ..     219     288 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.33
                 TSSHHHHHHH CS
         Arf  24 naGKtTilkk 33 
                 ++GKtT+l++
  CTQ29523.1 114 GSGKTTLLTE 123
                 68*****975 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.1e-05
                 TTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHH CS
         Arf 114 kevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlse 173
                   +a l+l NK Dl   l+ +  r+l   +e++   ++ei+ +sa++geg+++ l+wl  
  CTQ29523.1 229 FAAASLMLLNKVDLLPYLNFDVERCLACAREVN--PHIEIILVSATSGEGMEQWLTWLET 286
                 5688899**********9998888888888888..899*******************975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0     8e-06     0.021      25      63 ..     105     144 ..      88     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdg.giflrgkcdql 63 
                  ++ l+  +G+GK++l++e l++l+++  + +++g+ +  
  CTQ29523.1 105 LVLNLVSSPGSGKTTLLTETLTRLKGRAdCAVIEGDQQTV 144
                 566678889*****************94488888877665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.4e-05      0.06       7      41 ..     101     135 ..      94     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.4e-05
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvk 41 
                 a ++ vl ++  pG+GKT++l++ ++ l+ + + +
  CTQ29523.1 101 AKQQLVLNLVSSPGSGKTTLLTETLTRLKGRADCA 135
                 556667789**************999998776655 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   4.3e-05      0.11       1      33 [.     106     137 ..     106     233 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.3e-05
        MobB   1 vlgivgksgsGKTtLleklipelkarglrvgti 33 
                 vl++v+  gsGKTtLl++ ++ lk r    ++i
  CTQ29523.1 106 VLNLVSSPGSGKTTLLTETLTRLKGRA-DCAVI 137
                 68999*****************99874.45555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.3e-05      0.11     132     182 ..     108     163 ..      73     179 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.3e-05
       T2SSE 132 ilvsGgTgsGKttllyallkeinksderiv......tvEDpvEiqleganqvqlnak 182
                  lvs + gsGKttll   l+ ++ + ++ v      tv D++ i+  g  ++q+n+ 
  CTQ29523.1 108 NLVSSP-GSGKTTLLTETLTRLKGRADCAViegdqqTVNDAARIRATGTPAIQVNTG 163
                 356654.9***************9955554344444899999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2278.88
//
Query:       CTQ29524.1  [L=90]
Description: protein required for maturation of hydrogenases 1 and 3 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-25   88.8   1.1    2.2e-25   88.6   1.1    1.1  1  HupF_HypC  HupF/HypC family


Domain annotation for each model (and alignments):
>> HupF_HypC  HupF/HypC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   1.1   1.2e-29   2.2e-25       1      65 []       1      71 [.       1      71 [. 0.98

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 1.2e-29
                CCEEEEEEEEEEETTEEEEECTTEEEEEEGTTC......TTB-TT-EEEEETTEEEEEE-HHHHHHHHHHH CS
   HupF_HypC  1 MCLaiPgkvveiedelAlvdvgGvrrevslalv......eevkvGdyVLvhvGfAiekideeeaeetlell 65
                MC++iPg++ +i++ lA+v+v+G++r+v+l lv      ++++ G++VLvhvGfA+++i+e+ea+ tle+l
  CTQ29524.1  1 MCIGIPGQICAIDGVLAKVEVCGIQRDVDLTLVgavdeqGQPRLGQWVLVHVGFAMSVINEAEARDTLEAL 71
                ************************************998889**************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 742.68
//
Query:       CTQ29525.1  [L=373]
Description: protein required for maturation of hydrogenases [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.8e-150  500.9   0.0     2e-150  500.8   0.0    1.0  1  HypD      Hydrogenase formation hypA family


Domain annotation for each model (and alignments):
>> HypD  Hydrogenase formation hypA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.8   0.0  1.1e-154    2e-150      10     351 .]      20     367 ..      11     367 .. 0.96

  Alignments for each domain:
  == domain 1  score: 500.8 bits;  conditional E-value: 1.1e-154
                 HHHHHHT.....SS-EEEEE--HHHHHHHHHTTHHHHS-TTEEEEE-S--TTTTS-HHHHHHHHHHHHH--EEEEE-CCHHG---TT--HHHHHHTT-E CS
        HypD  10 ikkeakk.....erelkimevCGghthaivryglrslLpenielisGPGCpVCvtpeeeidkaielaekeevilatfgDmlrvpgskksLleakaegad 103
                 ++++a+       r+l+imevCGghthai+++gl++lLpenie+i+GPGCpVCv+p+++id++ie+a++++vi++tfgD++rvpg+++sLl+aka+gad
  CTQ29525.1  20 LQQRARLlphtaARPLRIMEVCGGHTHAIFKFGLDQLLPENIEFIHGPGCPVCVLPMGRIDACIEIASRPGVIFCTFGDAMRVPGKNGSLLQAKARGAD 118
                 44444333344589************************************************************************************* PP

                 EEE-SSHHHHHHHHHH-TTSEEEEEEEE-HHHHHHHHHHHHHHHHHT-SSEEEEEEEE-HHHHHHHHHHTT.---SEEEEEHHHHHHHTTHHHHHHHHH CS
        HypD 104 vrivyspldalkiakenpdkevvflavGFEttapatalalleakkeglknfsvlsshklvppalealleseelkidgfiapghvstviGlkayeelaee 202
                 vrivysp+dal++a++np++evvf+++GFEtt+patal+l++a++++++nf+++++h+++ p+l+ ll+++e+ id+f+apghvs+viG++ay ++a++
  CTQ29525.1 119 VRIVYSPMDALRLAQQNPQREVVFFGLGFETTMPATALTLRQARERNVDNFYFFCQHITLLPTLRSLLDQPENGIDAFLAPGHVSMVIGTEAYGFIASD 217
                 *************************************************************************************************** PP

                 H---EEEE-SSHHHHHHHHHHHHHHHHTT---EEETTTTT--TT--HHHHHHHHHHEEEEEE.EETTTEEEEEEEEEE-GGGGGGBGGGT----S---S CS
        HypD 203 ykvpvvvaGFepldilqailmlvkqleegeaeveneYkrvvkeegnkkaqklieevfevrda.ewRglgvipksglklreeyaefdaekkfelekeeek 300
                 y+ p+vvaGFepld+lq+ +mlv+q+ +++++ven+Y+rvv +egn+ aq+++++vf++  + ewRglgvi++sg++l+++y++fdae++f+ + +++ 
  CTQ29525.1 218 YHRPLVVAGFEPLDLLQGAVMLVEQTIAQRSDVENQYRRVVPDEGNPLAQAAMADVFRLDGDsEWRGLGVISDSGVQLTPAYQRFDAEAHFRPAPQRVC 316
                 **********************************************************97555*******************************9**** PP

                 S-TT--HHHHHTTS--GGGSTTBTTTB-SSS-SSHHHHSTT-HHHHHHHTT CS
        HypD 301 ekkackcgevlkGkakPedCklFgkaCtpenpvGacmvSsEGaCaayykyg 351
                 ++++++cgevl+G++kP++C+lF+++C+p++++Ga mvSsEGaCaa+y+y+
  CTQ29525.1 317 DDPRARCGEVLTGRCKPHQCPLFASTCNPQSAFGALMVSSEGACAAWYQYR 367
                 *************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 3214.30
//
Query:       CTQ29526.1  [L=336]
Description: carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-25   89.1   1.9    5.6e-25   88.3   1.9    1.4  1  AIRS_C    AIR synthase related protein, C-terminal domain
    1.3e-16   61.0   1.5    3.1e-16   59.8   1.5    1.6  1  AIRS      AIR synthase related protein, N-terminal domain


Domain annotation for each model (and alignments):
>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   1.9   6.3e-29   5.6e-25       2     151 ..     166     312 ..     165     316 .. 0.92

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 6.3e-29
                 TTEEEEEEETSSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHHHHH CS
      AIRS_C   2 pGdvliltgslGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpifdel 100
                 +Gdvl++ g+lG +ga+++  r++   +g        +d++ +  li+  r l      vka++D T+GG+   ++e a+asg+g+e++++ +p+ d +
  CTQ29526.1 166 AGDVLLVSGTLGDHGATILNLREQMGLDGAL-----SSDCAVLTPLIQTLRPLSG----VKALRDATRGGVNAVAHEFAAASGCGIELQEATLPVNDTV 255
                 7****************************98.....9*************99999....9*******************************55555555 PP

                 H.....HHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTC.CCEEEEEEEEESSSE CS
      AIRS_C 101 e.....splemllsensGrllvavppeeadavlaileeegl.peaavIGevtakeel 151
                 +     ++l++l ++n+G+l++av+++ea+ vla l+++ l  +aa+IGev+a++++
  CTQ29526.1 256 RgvcelLGLDALNFANEGKLVLAVARDEAENVLAHLRSHALgRDAAIIGEVVARPGV 312
                 555555************************************99*********9876 PP

>> AIRS  AIR synthase related protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   1.5   3.4e-20   3.1e-16       4      93 ..      48     152 ..      36     153 .. 0.91

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 3.4e-20
                 E....EEEEEEEEE.EECCTCCCC....HHHHHHHHHHHHHHTTTEEEEEEEEEEEEC......HHHHHHHHHHHHHHHTT-EEEEEEEEEESS..... CS
        AIRS   4 a....vvvttdshnrpvlvepvhf....iGakavavnlsDlaamGArPlalllslalp......wleevvrglaeaaeelgvplvgGdtsfsne..... 83 
                 a    ++++td    +++++p  f    iG++av+++++D+a+ GA P++l++ ++l+      +le+vv+++a+ a+++g+++v+Gdt++ ++     
  CTQ29526.1  48 AqgdrLAFSTD----SYVIDPLFFpggnIGKLAVCGTANDVAVSGAIPRYLSCGFILEeglemaTLEAVVASMADTARAAGIAIVTGDTKVVPRgaadk 142
                 15555699***....8899***99******************************************************************998889999 PP

                 EEEEEEEEEE CS
        AIRS  84 ptisvtavGl 93 
                 ++i+++ +G 
  CTQ29526.1 143 LFINTAGIGA 152
                 99***99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.32
# Mc/sec: 3128.17
//
Query:       CTQ29527.1  [L=690]
Description: DNA-binding transcriptional activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-70  234.6   0.1    8.4e-70  233.8   0.1    1.4  1  Sigma54_activat  Sigma-54 interaction domain
    2.1e-21   76.5   0.0    9.3e-21   74.4   0.0    2.1  2  Sigma54_activ_2  Sigma-54 interaction domain
    1.3e-18   67.9   0.3    8.7e-13   49.1   0.0    2.5  2  GAF              GAF domain
    3.1e-14   53.5   0.2    7.5e-11   42.5   0.0    2.4  2  GAF_2            GAF domain
    1.3e-10   41.7   0.0    2.4e-09   37.6   0.0    2.7  2  GAF_3            GAF domain
    1.1e-07   31.9   0.1    2.4e-07   30.8   0.1    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
    2.3e-06   28.1   0.0    6.4e-06   26.6   0.0    1.8  1  AAA              ATPase family associated with various cellul
    0.00026   20.7   0.2    0.00026   20.7   0.2    2.3  3  HTH_8            Bacterial regulatory protein, Fis family
     0.0016   17.9   0.5       0.64    9.4   0.1    2.9  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0058   17.0   0.3       0.02   15.3   0.0    2.1  2  AAA_16           AAA ATPase domain
     0.0095   15.7   0.0       0.09   12.5   0.0    2.4  2  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.025   14.3   0.0    1.6  1  IstB_IS21        IstB-like ATP binding protein
      0.015   15.6   0.1        6.1    7.2   0.3    3.5  2  AAA_19           AAA domain
      0.043   14.3   0.1       0.41   11.2   0.0    2.5  2  ABC_tran         ABC transporter
      0.052   13.2   0.2       0.14   11.8   0.2    1.8  1  HTH_50           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.8   0.1     7e-73   8.4e-70       1     168 []     381     548 ..     381     548 .. 0.99

  Alignments for each domain:
  == domain 1  score: 233.8 bits;  conditional E-value: 7e-73
                      ----SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTT CS
  Sigma54_activat   1 ligesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadg 94 
                      +ig+sea++++l+q+++va++d++vli+Ge+GtGKel+araih+ s r+ +++v++ncaa+p+ lles+LFGhe+GaFtGA++++ G+fe ad+
       CTQ29527.1 381 IIGRSEAMNNVLKQVEMVAHSDSTVLILGETGTGKELIARAIHNLSGRNGRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADK 474
                      799******************************************************************************************* PP

                      SEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEEE CS
  Sigma54_activat  95 GtlfLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnvieie 168
                      + lfLDe+g++plelQ kLlrvlqe+e+er+Gs+k i++dvr+iaatn+dl+++v +++fr+dLyyrlnv++i+
       CTQ29527.1 475 SSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKLIQTDVRLIAATNRDLKQMVIDREFRSDLYYRLNVFPIH 548
                      ***********************************************************************995 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.4   4.1e+03      45      91 ..     168     216 ..     157     223 .. 0.68
   2 !   74.4   0.0   7.8e-24   9.3e-21       1     138 []     382     552 ..     382     552 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.4
                      TS-EE--SSTTHHHH..-HHHHHHHTTTSEEEEEE-TT--HHHHHHHHH CS
  Sigma54_activ_2  45 sgpwleifvverlak..lpldlleqakggtLylkdiadlskaeqkeLle 91 
                      + ++++ ++++ l +   + ++l  +++++L   di++l ++  ke+  
       CTQ29527.1 168 QNRVSNNVDYDLLCHerDNFRILVAITNAVLSRLDIDELVSEVAKEIHR 216
                      4445555555555543467899999999999999999998888887765 PP

  == domain 2  score: 74.4 bits;  conditional E-value: 7.8e-24
                      X---HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-HHHHHHH.......................TTTS CS
  Sigma54_activ_2   1 lgasaaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklpldlleq.......................akgg 71 
                      +g+s+a+++  +++e +a+s + v+++Ge G+gkel+Ar++h+ sg++   +v  ++a++p+ lle+                       a+  
       CTQ29527.1 382 IGRSEAMNNVLKQVEMVAHSDSTVLILGETGTGKELIARAIHNLSGRNGRRMVKMNCAAMPAGLLESdlfghergaftgasaqrigrfelADKS 475
                      79**********************************************9999999******777777666666666666666666666668*** PP

                      EEEEEE-TT--HHHHHHHHHHHHH..........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  72 tLylkdiadlskaeqkeLlellak..........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                       L+l ++ d++ ++q +Ll +l++            + ++rl++++ +dl+q++   +f + L+++L  + +h+PpL
       CTQ29527.1 476 SLFLDEVGDMPLELQPKLLRVLQEqeferlgsnkLIQTDVRLIAATNRDLKQMVIDREFRSDLYYRLNVFPIHLPPL 552
                      ************************9******9663399**************************************9 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   7.9e-06    0.0094       1     131 [.      26     162 ..      26     163 .. 0.71
   2 !   49.1   0.0   7.3e-16   8.7e-13       1     133 []     202     344 ..     202     344 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.9e-06
                 SHHHHHHHHHHHHHHHHTESEEEEEEEEETTEEECEEEEECCEEEETTSHHHH............HHHHHSSSEEESTGGTSTTHHTT....HHHHHHH CS
         GAF   1 dleelldtvveelrellgadrvalylpdydGlhydipqasrwlfmkngrgicg............qvlatgqplvipdstpdprfaqy....nrrdlle 83 
                 dl  l++t+++ +++   ad++a+ l    G+h     a+r+  ++ g++ +             + l ++ + + +   +++ fa++     r+ l +
  CTQ29527.1  26 DLAALSETLTRLVQQSALADEAAIIL-WNAGNHR----AARYACDEAGHP-VSyedetvlahgpvRRLLSRPDALHC---DHETFADTwpqlIRSGLYR 115
                 678899******************98.4555444....555533333333.11122211113344444444444455...7888998788887788888 PP

                 HTTESEEEEEEEEETTEEEEEEEEEESSS.CSHHHHHHHHHHHHHHHHH CS
         GAF  84 nmgirsslvvPlvndgelwGllvlhnpsp.pftreelellqvladqvav 131
                 ++g+  +  +Pl +dg+++G   + ++++ p+++ e + l ++a+ vav
  CTQ29527.1 116 PFGY--YSLLPLAADGRIFGGCEFLRRDNrPWSEKEFQRLHTFAQIVAV 162
                 8888..5679****************65578**************9997 PP

  == domain 2  score: 49.1 bits;  conditional E-value: 7.3e-16
                 SHHHHHHHHHHHHHHHHTESEEEEEE.EEETT......EEE...CEEEEECCEEEETTSHHHHHHHHHSSSEEESTGGTSTT..HHTTHHHHHHHHTTE CS
         GAF   1 dleelldtvveelrellgadrvalyl.pdydG......lhy...dipqasrwlfmkngrgicgqvlatgqplvipdstpdpr..faqynrrdllenmgi 87 
                 d++el+ +v++e+++++  d  ++ l +d+ G       hy     p  ++   ++ g+    +v+++++ l+++    +++   a+y +++l+e +g 
  CTQ29527.1 202 DIDELVSEVAKEIHRYFRIDAISVVLrSDRKGklniysTHYldaSHPVHDQSEVDEAGTL-TERVFKSKEMLLLN---LHEHdtLAPY-EKMLFEMWGN 295
                 799******************999876677775433322334322222222233333444.56************...5555326665.4677777777 PP

                 S..EEEEEEEEETTEEEEEEEEEESSS.CSHHHHHHHHHHHHHHHHHHH CS
         GAF  88 r..sslvvPlvndgelwGllvlhnpsp.pftreelellqvladqvaval 133
                 +  +++ +Pl++++ l+G+l l ++++  ft+  l ll+++a++v++a+
  CTQ29527.1 296 KiqTLCLLPLMSGNTLLGVLKLAQCDEqVFTTTNLKLLRQIAERVSIAI 344
                 777*********************88889******************97 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.2    0.0015       1.8       3     136 ..      26     163 ..      24     165 .. 0.68
   2 !   42.5   0.0   6.2e-14   7.5e-11       3     138 .]     202     345 ..     200     345 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0015
                 HHHHHHHHHHHHHHH..SS..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B..--..-TTHHHHHHHHTS-EEES-..GGG-S-HHHHH.HHHHTT-- CS
       GAF_2   3 dleelldlvldelve..lgaalgyillvdddgglrlaawgeaeeefgaaldr..pl..geglvgealrtgrpvilnd..leedpdkkglp.aghaglrs 92 
                 dl  l +++++ +++  l  ++++il   ++++    a+++a +e g+ ++       ++g+v + l    ++ +++  +++ + +   +   +++++ 
  CTQ29527.1  26 DLAALSETLTRLVQQsaLADEAAIILWNAGNHR----AARYACDEAGHPVSYedETvlAHGPVRRLLSRPDALHCDHetFADTWPQLI-RsGLYRPFGY 119
                 566666666666666222233667766554444....5555555555555443322579**999999999****99963333333333.2477777777 PP

                 EEEEEE-TTS---EEEEES......--HHHHHHHHHHHHHHHHH CS
       GAF_2  93 flavPlisegrvvGvlnlyankppafdeedlelLeelaeqiaia 136
                    +Pl ++gr++G  ++ + + ++++e + + L ++a+ +a++
  CTQ29527.1 120 YSLLPLAADGRIFGGCEFLRRDNRPWSEKEFQRLHTFAQIVAVV 163
                 7*************999877777779*************99987 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 6.2e-14
                 HHHHHHHHHHHHHHH.SS...EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B--.-TT.HHHHHHHHTS-EEES-GGG....-S-HHHHH.....HHHH CS
       GAF_2   3 dleelldlvldelve.lg.aalgyillvdddgglrlaawgeaeeefgaaldrpl.geg.lvgealrtgrpvilndlee....dpdkkglp.....agha 88 
                 d++el+++v +e+++ +   a++++l  d +g+l + +  + ++++  + ++ + ++g l+++++++++ ++ln  e+     +     +       + 
  CTQ29527.1 202 DIDELVSEVAKEIHRyFRiDAISVVLRSDRKGKLNIYSTHYLDASHPVHDQSEVdEAGtLTERVFKSKEMLLLNLHEHdtlaPY-----EkmlfeMWGN 295
                 89*************669666999999999999555566666666666666666789989*******88777766555233222.....2355558888 PP

                 TT--EEEEEE-TTS---EEEEES......--HHHHHHHHHHHHHHHHHHH CS
       GAF_2  89 glrsflavPlisegrvvGvlnlyankppafdeedlelLeelaeqiaiaie 138
                 ++++   +Pl+s++ ++Gvl l+  +++ f+ ++l lL+++ae ++iai+
  CTQ29527.1 296 KIQTLCLLPLMSGNTLLGVLKLAQCDEQVFTTTNLKLLRQIAERVSIAID 345
                 89999*******99********9999999*******************96 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.41   4.9e+02      79     124 ..     116     161 ..      26     166 .. 0.55
   2 !   37.6   0.0     2e-12   2.4e-09       1     129 []     202     346 ..     202     346 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.41
       GAF_3  79 pdraalavPLvagr.qviGvlalastkprafdaedlelleslArqia 124
                 p +++ ++PL+a + + +G   + ++++r++++++ + l ++A+ +a
  CTQ29527.1 116 PFGYYSLLPLAA-DgRIFGGCEFLRRDNRPWSEKEFQRLHTFAQIVA 161
                 458999999999.5599998888888888888888888888888666 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 2e-12
       GAF_3   1 sldellekllkllvkllgaevgalllldedgnklqva.agw.dgkpalse..sldedsalarralssgevvsepsfaeedglpd.............ra 82 
                 ++del+++++k++ + ++ ++++++l+ +++ kl++   ++ d+++ ++   ++de+  l+ r+++s+e +     +e d+l               + 
  CTQ29527.1 202 DIDELVSEVAKEIHRYFRIDAISVVLRSDRKGKLNIYsTHYlDASHPVHDqsEVDEAGTLTERVFKSKEMLLL-NLHEHDTLAPyekmlfemwgnkiQT 299
                 78**********************9988777799777577788877775578999*************98633.3344333222233344445545477 PP

       GAF_3  83 alavPLvagrqviGvlalastkprafdaedlelleslArqiataier 129
                 + ++PL++g++++Gvl la+ +++ f+ ++l ll+ +A ++++ai++
  CTQ29527.1 300 LCLLPLMSGNTLLGVLKLAQCDEQVFTTTNLKLLRQIAERVSIAIDN 346
                 777*******************999********************98 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1     2e-10   2.4e-07       2     135 ..     405     535 ..     404     538 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 2e-10
                 EEEE--SSSSHHHHHHHGGGGB......S--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG--HHHHHHHHHHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaal......nreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEveraesevlnsLlslle 90 
                 vl++G++GtgK  +a+ +  +         +++  ++++++ e+dl+g+ +      +++  ++ r +r     ++ l+lDEv  ++ e +++Ll++l 
  CTQ29527.1 405 VLILGETGTGKELIARAIHNLSgrngrrMVKMNCAAMPAGLLESDLFGHER-----GAFTGASAQRIGRfelaDKSSLFLDEVGDMPLELQPKLLRVLQ 498
                 89********************97422222222333444555566666555.....78999999999999999************************** PP

                 SSEEE..-SSSEEE---......-EEEEEESS--.-TT-TTHHHH CS
       AAA_5  91 errllleeggelvkaknddllerfrviatanpldrslnelspalr 135
                 e+++    +++l++ +       +r+ia++n+   +++ ++ ++r
  CTQ29527.1 499 EQEFERLGSNKLIQTD-------VRLIAATNRDL-KQMVIDREFR 535
                 *****99999999664.......9*******876.6666666666 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   5.3e-09   6.4e-06       1     112 [.     405     527 ..     405     544 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 5.3e-09
                 EEEESSTTSSHHHHHHHHHHHHT...HEEEEEETTTCSSS.............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg...vefleisgsellsk.............yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeee 83 
                 vl+ G  GtGK l+a+a+ + +g   +++++++++ +                + g+s+++i + f+ a +++    lf+DE+  +  +          
  CTQ29527.1 405 VLILGETGTGKELIARAIHNLSGrngRRMVKMNCAAMPAGllesdlfghergaFTGASAQRI-GRFELADKSS----LFLDEVGDMPLEL--------- 489
                 7999*****************95444889999998887557777888888887777777777.5677777766....*********6666......... PP

                 HHHHHHHHHHHHTTTS........SSTEEEEEEESS...G CS
         AAA  84 rvvnqLlteldgvkkk........eskvivigatnr...p 112
                   +++Ll++l++++ +        + +v +i+atnr    
  CTQ29527.1 490 --QPKLLRVLQEQEFErlgsnkliQTDVRLIAATNRdlkQ 527
                 ..9*******99999999******999*********6533 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       5.8   6.9e+03      32      39 ..     535     542 ..     535     543 .. 0.84
   2 ?   -3.6   0.0       8.5     1e+04       9      21 ..     604     616 ..     603     616 .. 0.79
   3 !   20.7   0.2   2.1e-07   0.00026       6      42 .]     643     682 ..     641     682 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.8
                 HHHHHHHH CS
       HTH_8  32 RrtLyrKL 39 
                 R+ Ly++L
  CTQ29527.1 535 RSDLYYRL 542
                 778****9 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8.5
                 HHHHHHHHTTT-H CS
       HTH_8   9 lIeaALertgGnk 21 
                 +Ie A   t+Gn+
  CTQ29527.1 604 VIERAVLLTRGNV 616
                 7888888899985 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 2.1e-07
                 HHHHHHHHHHHTTT-HH...HHHHHHTS-HHHHHHHHHHT CS
       HTH_8   6 EkelIeaALertgGnks...kAArlLGisRrtLyrKLkkY 42 
                 E +lI+ +L++++G+++    AA++LG+ R+tL  ++k++
  CTQ29527.1 643 EYQLIVRVLKESNGVVAgpkGAAQRLGLKRTTLLSRMKRL 682
                 99**************73337*****************96 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.4   4.1e+03     109     139 ..     314     346 ..     312     350 .. 0.71
   2 !    9.4   0.1   0.00054      0.64      12      45 ..     392     425 ..     377     439 .. 0.78
   3 !    5.5   0.0    0.0081       9.7      93     157 ..     460     522 ..     453     527 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.4
  Mg_chelatase 109 vLfLDElpe..fkrkvlevLRePledgevtisr 139
                   vL L  + e  f+++ l+ LR+  e+ +++i  
    CTQ29527.1 314 VLKLAQCDEqvFTTTNLKLLRQIAERVSIAIDN 346
                   555555544448888899999999999988875 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00054
  Mg_chelatase  12 kraleiaaaGgHnlllvGppGsGKtmlakrlpsl 45 
                    + +e+ a     +l++G  G+GK ++a+++++l
    CTQ29527.1 392 LKQVEMVAHSDSTVLILGETGTGKELIARAIHNL 425
                   3467888899999*****************9987 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0081
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamN 157
                   g s  + G   la +  LfLDE+ ++  +    L + l+++e   +r  ++    +++ l+aa+N
    CTQ29527.1 460 GASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQE--FERLGSNKLIQTDVRLIAATN 522
                   566788999**************9999988888877777776..456666666777777888777 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         8   9.6e+03      97     116 ..      30      48 ..       6      71 .. 0.52
   2 !   15.3   0.0   1.7e-05      0.02       3      63 ..     382     441 ..     380     533 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 8
      AAA_16  97 wrekleealaavpelagaea 116
                  +e+l++ + ++++la+++a
  CTQ29527.1  30 LSETLTRLV-QQSALADEAA 48 
                 222222222.2333444443 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.7e-05
      AAA_16   3 vGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 +GR e ++ +l  +e+v+ ++ + vl+ Ge G+GK  ++r++++   ++g   ++ +c   
  CTQ29527.1 382 IGRSEAMNNVLKQVEMVAHSD-STVLILGETGTGKELIARAIHNLSGRNGRRMVKMNCAAM 441
                 799999999999999998888.8********************766665555566666554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   7.5e-05      0.09      13     114 ..     397     499 ..     392     505 .. 0.75
   2 ?   -0.3   0.0      0.65   7.7e+02      49      78 ..     561     591 ..     554     614 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.5e-05
      AAA_30  13 lltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgi...eastiakllkrlk.grarlepgtllivDEagmvdtkqlaa 107
                 +++++d ++++ G  GtGK  + +a+ ++  ++g+r++ +   +  A  L+ +l      a t a+     + gr +l++++ l  DE+g +  +   +
  CTQ29527.1 397 MVAHSDSTVLILGETGTGKELIARAIHNLSGRNGRRMVKMNCAAMPAGLLESDLFGherGAFTGASAQ---RiGRFELADKSSLFLDEVGDMPLELQPK 492
                 344455699**************************************999976543221222222222...2456778889999999999998888888 PP

      AAA_30 108 llkaaek 114
                 ll+ +++
  CTQ29527.1 493 LLRVLQE 499
                 8888776 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.65
      AAA_30  49 viglAptgkaAkvLaeelg.ieastiakllk 78 
                 +++ A t k A++++++++ i+a+t+  l++
  CTQ29527.1 561 LLVKAFTFKIARRMGRNIDsIPAETLRTLTR 591
                 56779999********99967****998873 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.1e-05     0.025      29     125 ..     383     490 ..     354     509 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.1e-05
   IstB_IS21  29 sldkrkvkeLatlsfiekke.nivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkra....rrdgkl.aralkrllkvdl.....lilDd 116
                 + +++  + L + + +++++  +++lG +G+GK  +a a+     r+g +++ +  +++ + l       ++ g +    ++r+ +++l     l lD+
  CTQ29527.1 383 GRSEAMNNVLKQVEMVAHSDsTVLILGETGTGKELIARAIHNLSGRNGRRMVKMNCAAMPAGLLESdlfgHERGAFtGASAQRIGRFELadkssLFLDE 481
                 44555555788999998776157789**********************999988888876655443111123333313445666666555555577777 PP

   IstB_IS21 117 lgllpldqa 125
                 +g  pl+ +
  CTQ29527.1 482 VGDMPLELQ 490
                 777777654 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.3    0.0051       6.1       4      46 ..     397     437 ..     394     507 .. 0.56
   2 ?    0.3   0.0      0.65   7.8e+02      44      89 ..     560     603 ..     550     653 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0051
      AAA_19   4 avealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeil 46 
                  v a++++++l+++  GtGK  + ++i +l  ++g++ + ++ 
  CTQ29527.1 397 MV-AHSDSTVLILGETGTGKELIARAIHNLSGRNGRR-MVKMN 437
                 55.6777778888888888866666555555555533.22222 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.65
      AAA_19  44 eillvaftgrAakelrerlaalgaeatTiHrlalldfddllteale 89 
                 ++l+ aft + a+++  +++    +a+T+  l+ +++ + + e  +
  CTQ29527.1 560 PLLVKAFTFKIARRMGRNID--SIPAETLRTLTRMEWPGNVRELEN 603
                 567889**********9994..578999998877777666644444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.3   1.5e+03     112     134 ..      10      32 ..       5      35 .. 0.88
   2 ?   11.2   0.0   0.00034      0.41       1      35 [.     392     426 ..     392     442 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHTSSEEEEES CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 112 GqkqrvalarallkkpkllllDE 134
                 Gq+    + r+ll++p+l  l E
  CTQ29527.1  10 GQQGLFDITRLLLQQPDLAALSE 32 
                 9999*************998866 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00034
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagll 35 
                 lk+v++  + +++v i+Ge+G+GK  +++++ +l+
  CTQ29527.1 392 LKQVEMVAHSDSTVLILGETGTGKELIARAIHNLS 426
                 6889999999*******************998875 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00012      0.14      29      50 .]     664     685 ..     662     685 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
      HTH_50  29 lAkrLGvShtaianklrkYgIs 50 
                 +A+rLG+  t+ + ++++ gI+
  CTQ29527.1 664 AAQRLGLKRTTLLSRMKRLGIN 685
                 69******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.38
# Mc/sec: 5406.25
//
Query:       CTQ29528.1  [L=466]
Description: 6-phospho-beta-glucosidase GmuD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.6e-110  368.9   0.9     3e-110  368.7   0.9    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1
    0.00016   21.2   0.0     0.0003   20.3   0.0    1.3  1  Cellulase      Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.7   0.9  3.4e-114    3e-110       2     453 .]       3     462 ..       2     462 .. 0.94

  Alignments for each domain:
  == domain 1  score: 368.7 bits;  conditional E-value: 3.4e-114
                    GGGS-TT-EEEEE--HHHHH--TTSTT---BHHH.HHHHHGGGSTTS---SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTS.TT---HH CS
  Glyco_hydro_1   2 ketfpedFlwgaataayqiEGawnedGkgesiwD.tftetpgkvlegsngdvacdsYhrykeDvallkelgvkayrfSisWpRilPkG.egeinek 95 
                    + +fp++Flwgaa++  q EG +n+  + +siwD  f+e+p++  ++   +  cd Yh+y++Dval+k+ g++++r Si W+R++ +  +g ++++
     CTQ29528.1   3 QYQFPQGFLWGAAASGPQTEGVTNK--RHRSIWDsWFAEQPERFYQQVGPQTVCDTYHQYPQDVALMKQTGFNSFRTSIQWSRLIADLeTGAPDPD 96 
                    569*******************997..899****5578889999999999*************************************999****** PP

                    HHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH.H-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHTSS-STT-S-TTTHHH CS
  Glyco_hydro_1  96 GlayYerLidelleagieplvTlyHwdlPqaLqd.eGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgyltgefaPgkkdleaay 190
                     +++Y+  +de+ ++giep++ lyH+d+P+aLq+ +Gg+e+ ++ + f ++a++ f+ fg+kvk+w+TfnEp v +  gyl+  + P kkd++ a 
     CTQ29528.1  97 AVRFYHAYLDEMIANGIEPMINLYHFDMPEALQKqYGGFESAHVAELFARFARTAFSLFGHKVKYWITFNEPIVPVEGGYLYDFHYPCKKDGRLAA 192
                    **********************************9************************************************************* PP

                    HHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG..S----HHHHHHH.TT CS
  Glyco_hydro_1 191 eaaHnlllaharavklykevaqkgkigivlnlslaeplseseedkeaaeraleflngwfldpvvkGdYpeemkellrergalpeiteedkell.kg 285
                    ++a n++laha+av +y+e a  g+ig+vlnl+  + l++s +dk+aa  a+ f n+ fldp+vk ++p+ + e+l  +  lp+  ++d +l+ ++
     CTQ29528.1 193 QVAFNIMLAHAKAVTAYRELALAGEIGVVLNLTPSYTLTDSDADKKAAGYADLFFNRSFLDPLVKHEFPKALCEILAAHDCLPTTSKDDAALIlSA 288
                    ****************************************************************************************9998879* PP

                    --SEEEEEEEEEEEEEE--...-STT---SSGGGGG-SBSS..-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE----EE-BSSS.....HHH CS
  Glyco_hydro_1 286 kadflglnyYtsrlvknkeseeaslskteekkleeevdpsl..pktdigwiiepeglrkllellkkeYqklpiyiteNGlgakdeiee.....gkv 374
                     +dflg+nyY  r vk+ ese      t e  +e++v+p+   +    + +i p++++++   ++++Y++++ y++e G+++  + e      g +
     CTQ29528.1 289 DIDFLGVNYYVPRRVKARESEYDLDYFTPEYYFENAVNPQGrfNPYRDNNEILPQAIYDIAANIRDNYGNIKWYLAEIGIAMDRQSEGepgadGVI 384
                    *****************995555555566677788887764114555667778****************************99987767888899* PP

                    --HHHHHHHHHHHHHHHHHHHTT--EEEEEEE-SB----GGGTTSEE--SEEEETTTTTEEEE-HHHHHHHHHHH-SSX CS
  Glyco_hydro_1 375 eDdkRidYlkehlnevkkaiedgvdlkgYvawsllDnfewaegyskrfGlvyvdrnetleRtpkkSakwykeviekngf 453
                    +D+ Ri+ ++ehl+++++ai dg++  g   w+++Dn +w++++++r+G+  +d  et eR+ k+ a w++e++++ngf
     CTQ29528.1 385 DDTFRIQLMEEHLVQLHRAIADGANCFGVHQWTFIDNWSWINAFKRRYGFWRLD-LETGERQIKRNALWFAELATSNGF 462
                    ******************************************************.9*******************9985 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.3e-08    0.0003      23      86 ..      60     125 ..      43     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.3e-08
                 HHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS..T CS
   Cellulase  23 tkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHse..e 86 
                   +  +++k+ gfn +R  + w +l+++ ++++ d++++  +++ ++ +++ng+  ++++ +   +
  CTQ29528.1  60 YPQDVALMKQTGFNSFRTSIQWSRLIADLETGAPDPDAVRFYHAYLDEMIANGIEPMINLYHFdmP 125
                 5677899*******************999999***************************9885342 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3272.21
//
Query:       CTQ29529.1  [L=730]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-48  162.6   0.5    1.2e-47  161.1   0.2    1.9  2  CBM_35           Carbohydrate binding module (family 35)
  ------ inclusion threshold ------
      0.088   13.3   0.1       0.42   11.2   0.0    2.1  2  PhoD_N           PhoD-like phosphatase, N-terminal domain
       0.12   11.6   0.0        0.2   10.8   0.0    1.2  1  CamS             CamS sex pheromone cAM373 precursor
       0.27   11.8   0.1       0.27   11.8   0.1    2.7  3  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain


Domain annotation for each model (and alignments):
>> CBM_35  Carbohydrate binding module (family 35)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       0.9     4e+03      65      93 ..     251     279 ..     241     287 .. 0.71
   2 !  161.1   0.2   2.7e-51   1.2e-47       2     120 ..     608     729 ..     607     730 .] 0.99

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.9
      CBM_35  65 ntlvvnGtavatvafaesdevkqttvitv 93 
                 ++lvv+Gt  + + fa +d   + + ++ 
  CTQ29529.1 251 HQLVVDGTYKKINPFALTDPNVDIVSNHY 279
                 479*****999999998886666655555 PP

  == domain 2  score: 161.1 bits;  conditional E-value: 2.7e-51
      CBM_35   2 vyeaekatltglkvdkaakavsgtGyvgefegagdavslnVnvekaGeynlnvtfsapygsKentlvvnGtavatvafaesdevkqttvitvkLkAGan 100
                 vy++++++lt++k+dk+a+av+++G++g+f+++gd+vs++V+++++G++ lnvtf++++g+K+n++vvnG a++tvaf+++de++q+++i+v+LkAG+n
  CTQ29529.1 608 VYGVAEGRLTVMKSDKDALAVGEDGFLGPFANEGDKVSWQVQAPWSGQFLLNVTFNGKWGGKQNSFVVNGDAPQTVAFPQTDEQGQQLRIPVTLKAGSN 706
                 8************************************************************************************************** PP

      CBM_35 101 tikidr...dWGymnvdsievkl 120
                 +i+++r   dWGym+++siev++
  CTQ29529.1 707 QIDFGRfagDWGYMFIKSIEVVA 729
                 ********************975 PP

>> PhoD_N  PhoD-like phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.5e-05      0.42      44      82 ..     447     485 ..     428     492 .. 0.85
   2 ?   -2.2   0.0       1.4   6.3e+03      25      41 ..     530     550 ..     510     576 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 9.5e-05
      PhoD_N  44 vrkgtalatseldytvkvevtgLkpgqeyfYrfragses 82 
                 v++g +  ++e+ + ++ + ++L+ g++y+Yr++a++es
  CTQ29529.1 447 VSDGVNEWNPETMVLFRDDYRQLQLGHTYYYRVTAKNES 485
                 556777888999999999****************77644 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
      PhoD_N  25 e....rpvrvevevaedeafk 41 
                 +    r+v+v ++ a d +++
  CTQ29529.1 530 DglpsREVKVGWQHAGDGQVH 550
                 144458899999999888764 PP

>> CamS  CamS sex pheromone cAM373 precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.4e-05       0.2     208     256 ..     173     221 ..     166     225 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.4e-05
                 EEEEESSHHHHHHSHHHHHHHHHHHHHHHHHSTT-TT-EEEEEEETTEE CS
        CamS 208 kyvlfPsseakeddsedaekfsnFkeevedffpnltgvvgkakYeddkL 256
                 + + f  ++a++ +++d+++f+ + + ++++  +   v+g+a+Y+++ +
  CTQ29529.1 173 QLAAFYHEKAEDFYRTDSKTFKAYLDVIRQVITRTNTVTGRAYYDEKAI 221
                 556677889999*********************************9976 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         4   1.8e+04      19      50 ..      80     110 ..      78     122 .. 0.59
   2 ?   11.8   0.1     6e-05      0.27      12      88 ..     411     489 ..     405     497 .. 0.73
   3 ?   -0.9   0.1      0.56   2.5e+03      12      36 ..     533     554 ..     510     601 .. 0.50

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4
  Pur_ac_phosph_N  19 sWitpektkksvvrygtssdalestaeatsst 50 
                       W t ++ ++++++   +++a+ ++++  s++
       CTQ29529.1  80 KWPTAQE-QQNWIQAMVQTGAKAQRVYVLSVQ 110
                      5666666.566666666666665555554444 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 6e-05
  Pur_ac_phosph_N  12 tstsmtvsWitpektkksvvrygtssdalestaeatss.tyettnyksgyshkatltgLepgttYyYrvgddeg.gwSe 88 
                      t++ ++++W+  +   ++ v+ + s++  ++ +  + s  +++ n +++  ++   ++L+ g tYyYrv ++++ g S 
       CTQ29529.1 411 TTSPFAINWMGAAVGRSYDVERAASPTGPWTVVGRDVSdGVNEWNPETMVLFRDDYRQLQLGHTYYYRVTAKNEsGRSA 489
                      6777788888888888888888888888877777664414445666677777888889***********9996555554 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.56
  Pur_ac_phosph_N  12 tstsmtvsWitpektkksvvrygts 36 
                      +s+++ v W+   +    +v +  +
       CTQ29529.1 533 PSREVKVGWQHAGD---GQVHFCHA 554
                      23333333333333...23333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5394.22
//
Query:       CTQ29530.1  [L=445]
Description: Maltoporin [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-88  298.3  16.7    1.6e-88  298.1  16.7    1.0  1  LamB      LamB porin


Domain annotation for each model (and alignments):
>> LamB  LamB porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.1  16.7   9.2e-93   1.6e-88       2     379 .]      33     445 .]      32     445 .] 0.92

  Alignments for each domain:
  == domain 1  score: 298.1 bits;  conditional E-value: 9.2e-93
                 EEEEEEEEEEETTSSB------TT-S----TT---SEEEEEEEEEEEEEETTEEEEEEEEEEEEE-...............-EEEEEEEEEET-STTST CS
        LamB   2 hGYaRsGvgvsseggeqkcfqaggagskyRLGnEcdtyaElklgkelekedgkkfkvdvmlayssd...elkndstadesdlalrqayveaknlleflp 97 
                 hGY+RsG++ +s+g++ + + +   ++k RLGnE+dt +El  + +l++++g+++kv+++l+++s+   +  n + +d +d+++r+ ++e++nl +f+p
  CTQ29530.1  33 HGYIRSGILANSDGNRADSVGLMP-DGKWRLGNEEDTKIELIPTVTLTADSGVVAKVQANLTHQSKctsD-WNCQDDDGHDVQFREGFAELSNL-DFAP 128
                 9**********9999877777776.5589*************************************7632.3344455666*************.**** PP

                 T-EEEEEEE--S-E.EEGGGTEEEE---EEEEEEEEEE-SSSEEEEEEEEEEEEEEEEC........EEEEEEEEEEEEEEEECCTTEEEEEEEEEEEE CS
        LamB  98 eatlWaGkrfyrrn.dihilDfyywdlsGtGaGiedidlgdgklslalvrsdesddsssk.......kevsnnaldlrltgiklndggklelgldyara 188
                 e+t+WaGkr+  +n   h +D+ y++++GtG+G++++dlg++++++++++ + +d+++++       +  +++ l+l l++i+   g +lel+   ++ 
  CTQ29530.1 129 EMTFWAGKRYSSSNtSSHQFDWEYIQYNGTGGGFDNMDLGFARFDAGVYAFSPTDETKAYpvdkgdqGYPDDYSLNLWLKKIAGT-GFDLELIGHHMNR 226
                 *******************************************************99999*****999999999******99995.99*********** PP

                 E--T-TT---EEEEEEEEEEE.EETT...EEEEEEEEEEECCCTT-SS---TTE----....EEEEEEEEEEEEEETTTEEEEEEEEEEEEEE...... CS
        LamB 189 nksdakkaakdgvmltlehtq.sflg...gfnklalqygtglgaenkgggsggelnnaaekdakslrlleqgvvqlsdkfslayavvyqksddry.... 279
                 n++   ++a++g+++t   +  +f+g   g+++lalqyg+gl+a+++ g++g++++n   ++++s+r++ + v++++ ++++++ +++qk+++      
  CTQ29530.1 227 NENH-PTSAEKGYGVTGIYNFdGFYGltgGYSRLALQYGKGLAAGDSLGKNGWGWANL--ENTQSWRVVLDSVASMG-DLEISTFAFWQKDKNYRwwte 321
                 ***7.889*****8888888777777777***************************88..679**************.9*************9669*** PP

                 .TTS--EEEEEEEEEEEEECCTTEEEEEEEEEEEEE..E..........EEEEEEEEEEEESSSSTT-SSEEEEEEEEEEEEESEEE............ CS
        LamB 280 .dngddkkwlsagvRpvykltdnfklllElgydrvk..k.........gnlyKlTlaptlkagsgfwsRPelRlfatyakwneaakd............ 354
                  +ng +++++ ag+Rp+ ++t+nf++++Elgy++ +  +         g+l+K+T+aptl+++sgfw+RP+lR+f+tyakw++ ++d            
  CTQ29530.1 322 dENGWGRSMWVAGIRPYHQITRNFAMQYELGYEYLDdkNykgvngkgkGGLTKVTVAPTLTFDSGFWARPQLRFFVTYAKWDKGVSDaldgnynwdtnt 420
                 9***********************************6615566666668************************************************99 PP

                 TGGGSB-SS-EEEEEEEEEEEEEEE CS
        LamB 355 alskagakkgdtseltfGvqaEaWW 379
                  ++++ +++g+t++++fGvqaE+W+
  CTQ29530.1 421 ITAGGYSRSGSTDTVNFGVQAEVWF 445
                 56788889999*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3275.74
//
Query:       CTQ29531.1  [L=466]
Description: putative PTS system, cellobiose-specific IIC component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-45  155.5  24.4    2.1e-45  155.2  24.4    1.1  1  PTS_EIIC  Phosphotransferase system, EIIC


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2  24.4   1.1e-49   2.1e-45       1     324 []      77     392 ..      77     392 .. 0.91

  Alignments for each domain:
  == domain 1  score: 155.2 bits;  conditional E-value: 1.1e-49
    PTS_EIIC   1 sdgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvl 99 
                 +d+f l++p++i+g++l+ + + p   ++ g+s   + ++   l  il   +++++++ +l++a+g++ +lak+ + +  l gl+g laf l  +i++ 
  CTQ29531.1  77 RDSFALAMPFVIVGSLLVPILFPP--VSIDGASR--FGQVYLLLRPILLPTFQLTIGLVALIVAFGASASLAKQYRLPERLCGLTGCLAFLL--FIGFR 169
                 689*******************33..36667665..3333334578*************************9999999999**********9..77766 PP

    PTS_EIIC 100 llaagalasakasilgiktlstgvfgaiivgllaaylynkfek.nitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalg...ll 194
                           ++ ++ ++++++g+f+a+i    + +++++f+k ++ i+LP+++p    + f  +i++lvv+l    v++ i   ++g ++ ++    +
  CTQ29531.1 170 ----------ETAVSNVYLGGMGIFTALISSTYSIEIIRFFYKkGWCIRLPDEVPLMTRNGFQLLIPLLVVMLS-ISVMNAILLQTTGRIVPELiseAV 257
                 ..........4456669****************************************************77777.589999999999999998866522 PP

    PTS_EIIC 195 ...lggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagk.eaahiltgefvs..vmfGgpgatlalyiaaflekkskqkkl 287
                    + +s++l +vli  f++ ll+++G+H+a+i++ ++++++ ++ ++nqq++ ag  +++hi  ++f++    +Gg+g tl l+++a+  + s+q+k+
  CTQ29531.1 258 rplVLASDTLMAVLISLFICNLLWFIGIHGALIITGIMNPFWMTYLFENQQALAAGSpTLPHIYLQGFWDfyLLIGGIGSTLPLVLMAMRSR-SRQLKS 355
                 67799*************************************************8887****************************777766.****** PP

    PTS_EIIC 288 lgsaaltpflfGItepleFgfpfvlnlllfipallag 324
                 + +  l p lf+I+ep++Fgfp+++n+++++p+l+ +
  CTQ29531.1 356 VAKIGLLPSLFNINEPILFGFPVIMNPVFLLPFLFVP 392
                 *********************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3600.22
//
Query:       CTQ29532.1  [L=104]
Description: N,N'-diacetylchitobiose-specific enzyme IIB component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-20   72.2   0.2    4.8e-20   72.0   0.2    1.0  1  PTS_IIB      PTS system, Lactose/Cellobiose specific IIB subu
  ------ inclusion threshold ------
       0.05   13.4   0.0      0.059   13.1   0.0    1.2  1  DSBA         DSBA-like thioredoxin domain
      0.081   13.3   0.1        3.8    8.0   0.0    2.2  2  Rimk_N       RimK PreATP-grasp domain
       0.11   12.2   0.1        7.2    6.3   0.0    2.4  2  ATP-grasp_6  ATP-grasp-like domain


Domain annotation for each model (and alignments):
>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.2   1.1e-23   4.8e-20       1      89 [.       3      94 ..       3      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 1.1e-23
                EEEEEESSSHHHHHHHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEESSGG..CTHHHHTT...SEEEEECTTHHHCCHCHHHHHH CS
     PTS_IIB  1 killaCgaGmatSlmaaeklekaakelgieaegeagveleaeeiaddaDlvllapqvrv..kdlarfag...kpvavinikdalgimdgekvlk 89
                ki+l+C+aGm+tSl++ +k+  +a+++g+ +e++a   +e +e    +++vll+pqv++  +dl+++a+   ++v+ in++d +g+++g++vl+
  CTQ29532.1  3 KIMLCCSAGMSTSLLM-KKMIAEAEQRGLPVEINAYGVAEFAEQVGHYQVVLLGPQVKYmqQDLQKQADkygIRVEPINMMD-YGMQKGAAVLD 94
                8***************.***********6666666664555555555**************9999999977778********.*********97 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.3e-05     0.059      30      91 ..      30      91 ..      13      98 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
                EEEEEEE-SSSCHHHHCT.S.GGGSHHHHHHHHHHHHHHHHHHT....GGSSHHHHHHHHHH CS
        DSBA 30 vkvvlrpfelagakkasgnvgpselpeklkylledlkrlaeaegiplrfpkdklknstraar 91
                + v ++++  a+ + ++g +++  l ++ ky+++dl++ a+++gi  +  + +  ++++ a+
  CTQ29532.1 30 LPVEINAYGVAEFAEQVGHYQVVLLGPQVKYMQQDLQKQADKYGIRVEPINMMDYGMQKGAA 91
                555555555555555577777777999******************99887766436555555 PP

>> Rimk_N  RimK PreATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.019        85       1      31 [.       1      34 [.       1      46 [. 0.73
   2 ?    8.0   0.0   0.00085       3.8      10      40 ..      57      87 ..      49      95 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.019
      Rimk_N  1 mkiaiLsrnpel...ystrrLveaaekrghevev 31
                mk ++L+ ++ +      ++++++ae+rg  ve+
  CTQ29532.1  1 MKKIMLCCSAGMstsLLMKKMIAEAEQRGLPVEI 34
                66667776665422244689999******99987 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00085
      Rimk_N 10 pelystrrLveaaekrghevevldplrcylk 40
                +  y ++ L++ a k g++ve +++ +  ++
  CTQ29532.1 57 QVKYMQQDLQKQADKYGIRVEPINMMDYGMQ 87
                4569********************9887765 PP

>> ATP-grasp_6  ATP-grasp-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0016       7.2       5      23 ..      12      34 ..      10      35 .. 0.75
   2 ?    3.4   0.0     0.013        59       8      28 ..      63      83 ..      62      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0016
  ATP-grasp_6  5 LSTqillk....eAikrGikvei 23
                 +ST +l+k    eA +rG+ vei
   CTQ29532.1 12 MSTSLLMKkmiaEAEQRGLPVEI 34
                 6888877633337999***9997 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.013
  ATP-grasp_6  8 qillkeAikrGikveilDred 28
                 q l k+A k Gi+ve +   d
   CTQ29532.1 63 QDLQKQADKYGIRVEPINMMD 83
                 8899**********9886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 797.38
//
Query:       CTQ29533.1  [L=440]
Description: PTS system, lactose/cellobiose family IIC component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-53  181.6  31.0    1.9e-53  181.6  31.0    1.4  2  PTS_EIIC  Phosphotransferase system, EIIC


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.6  31.0     1e-57   1.9e-53       1     324 []      33     352 ..      33     352 .. 0.93
   2 ?   -2.7   0.1      0.13   2.3e+03     159     179 ..     392     411 ..     386     424 .. 0.58

  Alignments for each domain:
  == domain 1  score: 181.6 bits;  conditional E-value: 1e-57
    PTS_EIIC   1 sdgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvl 99 
                 +dgf+ ++p+ i+g++ll++++ p+s+d+++    ++ ++  +  + l+ ++n++++++ l++a+gia +lak     ++ ag+++l++f l     v+
  CTQ29533.1  33 RDGFITALPFMIVGSFLLVFIFPPFSPDTTWGFARAWLQFSLDHRDALMLPFNFSMGVMTLFIAVGIAASLAKHHHLDSLTAGMLSLMSFLL-----VA 126
                 79*****************************888999999999****************************888888888899999999998.....33 PP

    PTS_EIIC 100 llaagalasakasilgiktlstgvfgaiivgllaaylynkfek.nitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalg.ll.. 194
                 ++       + + i+ ++  ++g+f+ai+v++ +++ly+++++ niti+LP ++p  v+ +f ++i++l +++++   l+l+++a  g+++ +  +   
  CTQ29533.1 127 APL------KDGQISTAYFSGQGIFTAILVAIYSTELYAFLKRhNITIRLPPEVPAGVARSFEILIPVL-AIILTLHPLNLFIEAQLGMIIPEAiMSlv 218
                 333......46789*******************************************************.77777888888888888888888862246 PP

    PTS_EIIC 195 ...lggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvs..vmfGgpgatlalyiaaflekkskqkkll 288
                    + +s++l ++l+  +++++l++ G+H+a+i++ ++++++ ++ + nq+++ ag   +hi  ++f++    +Gg+g tl l++ ++l++k  +++++
  CTQ29533.1 219 kplVAASDTLPAILLSVLVCQVLWFAGIHGALIVTGIMNPFWMANLSVNQAAMAAGTAIPHIYVQGFWDhyLLIGGVGSTLPLAL-MLLRSKAVHLRTI 316
                 888********************************************************************************99.888888******* PP

    PTS_EIIC 289 gsaaltpflfGItepleFgfpfvlnlllfipallag 324
                 g++ ++p++f+I+ep++Fg p+++n+l+f+p++l +
  CTQ29533.1 317 GRMGVVPGVFNINEPILFGAPIIMNPLFFLPFVLVP 352
                 *********************************986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.13
    PTS_EIIC 159 rfvpiittlvvllvvglvlll 179
                 +f+p i +l ++ +++ v++l
  CTQ29533.1 392 SFSPVILCL-ICMATAMVMYL 411
                 566666666.33333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3494.52
//
Query:       CTQ29534.1  [L=104]
Description: N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-32  110.3   7.0      4e-32  110.1   7.0    1.0  1  PTS_IIA   PTS system, Lactose/Cellobiose specific IIA subunit
  ------ inclusion threshold ------
       0.16   12.2   3.2       0.15   12.2   2.5    1.4  1  HemY_N    HemY protein N-terminus


Domain annotation for each model (and alignments):
>> PTS_IIA  PTS system, Lactose/Cellobiose specific IIA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   7.0   4.4e-36     4e-32       2      94 .]       6      98 ..       5      98 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.1 bits;  conditional E-value: 4.4e-36
     PTS_IIA  2 iameiIlhaGeArslameAlkaakegdfeeaeellkeAeeelkeAhkaqteliqkeasgekvevslllvHAqDhLmtaellkdlakelielyk 94
                ++m iI++aG++rsl++eAl+aak+gdf +a+++++eA +  +eAh +qt+li++++++ k++++l++vHAqDhLmt++l+k+l+ eli++y+
  CTQ29534.1  6 QVMGIIINAGQSRSLCYEALHAAKAGDFATADAKMQEAAHYSREAHLVQTQLIEADEGEGKTKMTLVMVHAQDHLMTSILAKELIAELIAIYR 98
                79*****************************************************************************************96 PP

>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.5   1.7e-05      0.15      63     100 ..      21      60 ..      13      67 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.7e-05
      HemY_N  63 lseGlialaeGdfarAekaaakaaklsea..pllayllaA 100
                   e+l a  +Gdfa+A  ++++aa +s++   + ++l++A
  CTQ29534.1  21 CYEALHAAKAGDFATADAKMQEAAHYSREahLVQTQLIEA 60 
                 679************************7744334566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 920.36
//
Query:       CTQ29535.1  [L=304]
Description: Fructokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-69  232.8   0.0    6.7e-69  232.6   0.0    1.0  1  ROK             ROK family
    4.3e-05   23.1   0.0      0.012   15.1   0.0    2.3  2  BcrAD_BadFG     BadF/BadG/BcrA/BcrD ATPase family
    0.00014   21.0   0.1     0.0023   17.0   0.1    2.5  1  Glucokinase     Glucokinase
  ------ inclusion threshold ------
      0.041   13.9   0.0      0.073   13.1   0.0    1.3  1  baeRF_family2   Bacterial archaeo-eukaryotic release factor f
      0.068   12.9   0.0       0.11   12.1   0.0    1.3  1  Hydant_A_N      Hydantoinase/oxoprolinase N-terminal region
       0.13   12.1   0.0        0.2   11.6   0.0    1.2  1  DEDD_Tnp_IS110  Transposase
       0.25   10.9   0.0       0.38   10.3   0.0    1.2  1  FGGY_N          FGGY family of carbohydrate kinases, N-termin


Domain annotation for each model (and alignments):
>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.6   0.0   2.6e-72   6.7e-69       2     290 ..       4     293 ..       3     296 .. 0.95

  Alignments for each domain:
  == domain 1  score: 232.6 bits;  conditional E-value: 2.6e-72
                 EEEEE-SSEEEEEEEETTS-EEEEEEEEEHCCHHCCHHHHHHHHHHCCCHCCHTEEEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHHHTS-E CS
         ROK   2 igidiGgtkialalvdeegeilarekvetptetteetlvdaiaelvdeaerkadeliavgigspGlisdksgkivstpnitwenfdlvekleerlnvpv 100
                 +gidiGgtk+++ l+d +ge ++r + +t +e +   +   + +l+++  +   +  ++gig+pG i+++sg i +   +  +  dl  ++ ++l+ pv
  CTQ29535.1   4 LGIDIGGTKMEAVLLDPAGECVQRLRRPTHKESYDAFM-RQLLTLIADIRAVSPQPFTLGIGLPGAIDPQSGRIKNCNCLVLNGHDLRRDIMQQLGQPV 101
                 69*************************99888888888.777889999999999999*****************99999999***************** PP

                 EEEEHHHHHHHHHHHHCTTTTTS-EEEEEESSSEEEEEEETTEEE--TTS-TT-GGGSBS-.....TTS-B..-TTS-BSBHHHCCSHHHHHHCHTCCG CS
         ROK 101 evenDvnaaalaEavfgaskdvenviyvtvgtGvGaGviingklitGrnGvagelGHiqld.....pegek..cgCGnqgClEtlasgralekraqqkg 192
                  ++nD+ +++l+Eav+ga +++++v+ v++gtG+G+G+++ ++l++G n +age+GH++l      ++g+   c+CG+++C+E ++sg+++++r+++  
  CTQ29535.1 102 WMANDADCFTLSEAVDGAGAGATTVFGVIIGTGCGGGIAVHQQLLSGPNAIAGEWGHNPLPgytpeRDGPPqpCYCGKTNCIESFLSGTGFARRYGE-- 198
                 *************************************************************999995554445*********************975.. PP

                 TTS-HHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHH--SEEEEEHCCCTSTTHHHHHHHHHHHCCTTTTCCCT-EEEE-S-STTHHHHHHHHH CS
         ROK 193 ekleakeiiklaekgdevaeevverlaeylakaiadlinlfdpqaivlgGgvseadklleairklvkkylnkklevpvveivaaklgdkagllGaaaL 290
                  ++ a+ i+ +a++gd+ a + ++ + ++ a+++a +in++dpq+ivlgGg+s++ +++  + +++  ++++  +++   i++a +gd +g++Gaa+L
  CTQ29535.1 199 -QARAEAIVAAAQNGDPRALAHWRHFIDAFARSLASVINILDPQVIVLGGGLSNVSQIYRDLPAAIVPWIFSDTCRTQ--IKPARFGDASGVRGAAWL 293
                 .567899999********************************************************************..*****************9 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.8e-06     0.012       1      24 [.       4      27 ..       4      53 .. 0.91
   2 !    5.9   0.0     0.003       7.6     177     264 ..     202     291 ..     190     293 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.8e-06
                 EEEEE-SSEEEEEEEETTTEEEEE CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlgr 24
                 +GiD+G+T+  avl+d  ge + r
   CTQ29535.1  4 LGIDIGGTKMEAVLLDPAGECVQR 27
                 8*******************8877 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.003
                  HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTT---SS..EEEESGGGG-HHHHHHH.........HHHH-S-EE--GGGGGHHHHHHH CS
  BcrAD_BadFG 177 aeaelrdalsggekaedIlaglhraialrvialisrsggvtde.vtltGGvakneaavkelrk....lvkenygevkininpdsiytgalGAa 264
                  aea + +a+ g+  a   la   + i   + +l+s ++  +++ ++l GG+++ ++++++l      ++ ++  + +i+  +  +  g+ GAa
   CTQ29535.1 202 AEAIVAAAQNGDPRA---LAHWRHFIDAFARSLASVINILDPQvIVLGGGLSNVSQIYRDLPAaivpWIFSDTCRTQIKPARFGDASGVRGAA 291
                  566666666666655...556666666666666666666666658888999999999987755000044455555555555555566666665 PP

>> Glucokinase  Glucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   8.8e-07    0.0023       4     245 ..       7     231 ..       4     251 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.8e-07
  Glucokinase   4 DiGGTkarlalveaeeeelelleiekyasadyasleealqaflaeaeaevkrpksavlAvAgpvegdeveltNlpW.viseeelakelgle...avel 97 
                  DiGGTk    l++ ++e   ++  +  + + y+ +   l + +a+++a   +p +  ++  g+++ +  ++ N++  v++ ++l++++  +    v +
   CTQ29535.1   7 DIGGTKMEAVLLDPAGEC-VQRLRRPTHKESYDAFMRQLLTLIADIRAVSPQPFTLGIGLPGAIDPQSGRIKNCNClVLNGHDLRRDIMQQlgqPVWM 103
                  ********9999999998.66666777889999999999999999999999999999****************9963678888888765443346888 PP

  Glucokinase  98 iNDfeavayaiplleaedlvqlgggkkdaeapiavlGaGTGLGvallipekerrvvlasEGGhvdfapeseeevelleilrkklgrvsaErvlSGpGL 195
                   ND  +  ++ ++ +        +g+   +   +++G G G G+a+  +  ++  ++a+E Gh  ++  ++e     +      +   +E +lSG+G 
   CTQ29535.1 104 ANDADCFTLSEAVDG--------AGAGATTVFGVIIGTGCGGGIAVHQQLLSGPNAIAGEWGHNPLPGYTPERDGPPQPCYCGKT-NCIESFLSGTGF 192
                  888888777655443........3445556677999**********99999****************999988887766554443.368999999999 PP

  Glucokinase 196 vnlyealaaadkleeellepaeiteaalegedplarealelFlailGsva 245
                  ++ y   a          ++++i++aa +++dp+a +  + F++++++  
   CTQ29535.1 193 ARRYGEQA----------RAEAIVAAA-QNGDPRALAHWRHFIDAFARSL 231
                  88776443..........455666666.3455666666666666666554 PP

>> baeRF_family2  Bacterial archaeo-eukaryotic release factor family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.9e-05     0.073      45      98 ..     209     262 ..     194     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.9e-05
  baeRF_family2  45 hrryqrraeeswerNaeavAeevdrlvresgaelVvlaGDvrarsllrdeLper 98 
                     ++   ra  +w++ ++a A+ +++++   +++++vl G    +s + + Lp++
     CTQ29535.1 209 AQNGDPRALAHWRHFIDAFARSLASVINILDPQVIVLGGGLSNVSQIYRDLPAA 262
                    55666788899**********************************999999986 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.4e-05      0.11       2      41 ..       4      42 ..       3      58 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.4e-05
  Hydant_A_N  2 igIDvGGTfTDavaldekeeevavlKllstpdavaegire 41
                +gID+GGT   av+ld+  e v+ l+ ++  ++   ++++
  CTQ29535.1  4 LGIDIGGTKMEAVLLDPAGECVQRLRRPTH-KESYDAFMR 42
                79****************999999999999.444444433 PP

>> DEDD_Tnp_IS110  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.6e-05       0.2       1      44 [.       4      47 ..       4      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.6e-05
  DEDD_Tnp_IS110  1 vGiDvakdkhdacvidaegkvllservpndeeglealleklaak 44
                    +GiD++ +k +a+++d++g+ + + r p+ +e+ +a++ +l+  
      CTQ29535.1  4 LGIDIGGTKMEAVLLDPAGECVQRLRRPTHKESYDAFMRQLLTL 47
                    5*********************9998888888888888776554 PP

>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015      0.38       2      34 ..       3      35 ..       2      44 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
                EEEEEEESSEEEEEEEETTS-EEEEEEEE--EB CS
      FGGY_N  2 ilglDcGttstkaivldekgkvvasaqaelels 34
                 lg+D+G+t++ a++ld  g+ v++ +++ + +
  CTQ29535.1  3 HLGIDIGGTKMEAVLLDPAGECVQRLRRPTHKE 35
                69*********************9998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2310.47
//
Query:       CTQ29536.1  [L=320]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-24   87.7   0.0    2.4e-24   86.6   0.0    1.6  1  Peripla_BP_3  Periplasmic binding protein-like domain
    3.5e-17   61.9   0.6    6.8e-17   61.0   0.6    1.5  1  LacI          Bacterial regulatory proteins, lacI family
    5.2e-08   32.6   0.0    7.5e-08   32.1   0.0    1.3  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    0.00016   21.9   0.7    0.00034   20.9   0.7    1.5  1  HTH_31        Helix-turn-helix domain
     0.0057   16.3   0.6      0.025   14.2   0.5    2.0  1  Peripla_BP_4  Periplasmic binding protein domain
  ------ inclusion threshold ------
      0.027   14.1   0.3       0.52    9.9   0.3    2.0  2  Peripla_BP_6  Periplasmic binding protein


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0   7.9e-28   2.4e-24       3     166 .]     159     316 ..     157     316 .. 0.91

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 7.9e-28
                   HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH.HHCC-SEEEEESSCCHHHHHHHHHCCTT- CS
  Peripla_BP_3   3 hLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal.klaalPtAviaasDelAlgvlqalreagl 98 
                   + + +Ghr+ia++   +++ + as+++++g+r++l+ + +p+n+ +v ++ +++++a+    l++++ k       +i+  D+ A+++++ lre  +
    CTQ29536.1 159 YVIGKGHRNIALLV--DSDSDDASRQMLEGYRNVLQNYSIPFNRQLVLTANDDVEQALLT--LINSFsK----YSVIIVKRDRYAAEAMRLLREFTI 247
                   6789**********..99999**************************9998887777776..4444422....169********************* PP

                   -TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEE.E--EEE--GGG CS
  Peripla_BP_3  99 rvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvl.lppelveReSt 166
                   +vP+++s+++++ds+la+l+ PplT ++ ple l  ++++ + +l++++++ + + + l+ +l++R+S+
    CTQ29536.1 248 AVPQEVSLLSLEDSPLASLLYPPLTCISWPLEALLDNCIQRIRSLIDDRPTFTAEGRsLAGRLIPRQSV 316
                   ***********************************************99999999888**********7 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.6   2.3e-20   6.8e-17       1      46 []       3      48 ..       3      48 .. 0.99

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 2.3e-20
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ti+DV rlA+VS aTVSrvL +++ V+ee re V++a+eelnY+P+
  CTQ29536.1  3 TIDDVSRLANVSRATVSRVLTGTRGVREESREAVLRAVEELNYRPS 48
                8*******************************************97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   2.5e-11   7.5e-08       3     211 ..      61     253 ..      59     313 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 2.5e-11
                   EEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHHHHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EEE CS
  Peripla_BP_1   3 klglvlpqldePffldlvkgitkaakehgvdvlllaageeedlakaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPcvi 99 
                    +glv+  +de+  + l+  +++a+k ++  +l+  + +  ++a+ id l+ + +  ++++  + +       a    +via ++ ++a     +  
    CTQ29536.1  61 HVGLVISAQDESHGARLLPLLSQALKGLNKSLLVQYVSDPVEQAAVIDDLQRQCVAVVVLGAVAAD-------AP--RNVIAFDRFGVAG--SNSQG 146
                   689999999999999999999999999999999999999999999999999999999999999988.......22..4899999998887..55666 PP

                   E-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHHHHH CS
  Peripla_BP_1 100 pddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaalGav 196
                    d   a e + ++ i +gh++ iall   +s  +++++ +G+++ l++   ++  + v++  +d+e+a + l + +++    ++i+ + d+ a+ a+
    CTQ29536.1 147 YDFAFATESACRYVIGKGHRN-IALLVDSDSDDASRQMLEGYRNVLQNYSIPFNRQLVLTANDDVEQALLTLINSFSK---YSVIIVKRDRYAAEAM 239
                   777778899************.***************************99**************9998766665554...4689999999999888 PP

                   HHHHHTT.--GGGEE CS
  Peripla_BP_1 197 lalkkeGrlkikeev 211
                   + l+    +  ++ev
    CTQ29536.1 240 RLLREFT-IAVPQEV 253
                   7777666.7777777 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.7   1.1e-07   0.00034      17      54 ..       4      40 ..       3      44 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 1.1e-07
      HTH_31 17 qeevAerlgvsestlsrlEqGrrgrpspavlealaral 54
                 ++v ++++vs++t+sr+ +G+rg ++++  ea++ra+
  CTQ29536.1  4 IDDVSRLANVSRATVSRVLTGTRG-VREESREAVLRAV 40
                689********************9.9999888888885 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.5   8.3e-06     0.025      43     182 ..     102     224 ..      62     247 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.3e-06
                   HHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHH CS
  Peripla_BP_4  43 eQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnae 139
                   eQ+a+i+d+  + v ++++ +v ++a +            V+afd++   +  ++   g d+  a e + +y+  k      ++++l  s +d +++
    CTQ29536.1 102 EQAAVIDDLQRQCVAVVVLGAVAADAPR-----------NVIAFDRF---GVAGSNSQGYDFAFATESACRYVIGKGH---RNIALLVDSDSDDASR 181
                   5555555554444555555544443333...........48999999...9999999999999999999999998887...68************** PP

                   HHHHHHHHHHHH..-T.TCEECCEEESTTTCHHHHHHHHHHHHHTT CS
  Peripla_BP_4 140 eriegfrkvlke..yp.gikivaevaganwdaekaqqalealltan 182
                   +++eg r+vl+    p + ++v    +an+d e+a   l + ++++
    CTQ29536.1 182 QMLEGYRNVLQNysIPfNRQLVL---TANDDVEQALLTLINSFSKY 224
                   ************66455555544...66999999987766666666 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00017      0.52     142     227 ..      68     151 ..      45     158 .. 0.79
   2 ?    3.1   0.0     0.021        62     121     185 ..     152     216 ..     144     267 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00017
                   EESSHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC- CS
  Peripla_BP_6 142 yadyafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlqikaagadavllagtgadlaallkaaaeaGldakrillvswsg 227
                   ++d + g+ + + l +a+k +   ++  +++  +  +++a+++ ++++ + +v+l++++ad++  + a+ ++G+ + + +++ +++
    CTQ29536.1  68 AQDESHGARLLPLLSQALKGLNKSLL--VQYVSDPVEQAAVIDDLQRQCVAVVVLGAVAADAPRNVIAFDRFGVAGSNSQGYDFAF 151
                   58899999999999999997776655..566668899*************************************998777766555 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.021
                   HHHHHHHHHHHHTTSCEEEEEE.ES.SHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHH CS
  Peripla_BP_6 121 qasalveylakelggkkvalvy.ad.yafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlq 185
                    ++++ +y++ + g +++al+  +d + ++r++ ++++ +++ + + +  +  ++ + +d++ ++l 
    CTQ29536.1 152 ATESACRYVIGK-GHRNIALLVdSDsDDASRQMLEGYRNVLQNYSIPFNRQLVLT-ANDDVEQALLT 216
                   667788999995.99999977537779999************9999875444433.44566666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2518.74
//
Query:       CTQ29537.1  [L=305]
Description: Uncharacterized periplasmic iron-binding protein HI_0362 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-73  246.2   0.0    3.9e-73  246.0   0.0    1.0  1  ZnuA      Zinc-uptake complex component A periplasmic


Domain annotation for each model (and alignments):
>> ZnuA  Zinc-uptake complex component A periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.0   0.0   2.1e-77   3.9e-73       1     255 [.      32     295 ..      32     296 .. 0.94

  Alignments for each domain:
  == domain 1  score: 246.0 bits;  conditional E-value: 2.1e-77
                 EEESSHHHHHHHHHHHGGGCEEEECS-TTSTTTT----HHHHHHHHHSSEEEESSTTTSGTHHHHHHHHTTCCCE.EEEETTTTCCSEBCSS....... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx....... RF
        ZnuA   1 VvattsplgdlvrqvaGdrvevtvLvppgadpHsyeptprdvrklaeAdllvynglelEtwldkllasssqatrv.evidlsegveeeeeee....... 91 
                 V++t+++++d++++vaGd+++v+++++pga++H+y+ptp d+++++ A+l+++ngl+lE w+ ++ + +++   v ev+ +seg++++  +        
  CTQ29537.1  32 VITTFTVIADMAQNVAGDAADVSSITKPGAEIHDYQPTPGDIKRAQGAQLILSNGLNLERWFARFYQHLQG---VpEVV-VSEGIQPMGISAgpysgkp 126
                 89***************************************************************999984...43666.7777744444446677778 PP

                 ESTGGGSHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGTEGEEEESSSTTHHHHHHTT-EEEEEESSSSS....HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxx RF
        ZnuA  92 DpHiWlspknaiamveniadaLveadpanadtyeanaaayiekLeeldaeireelaeipeekrklvtthdafgylarayglevagiagiste....aaq 186
                 +pH W+s +na  +v+ni+daLv++dp +adty++na+ay+ek+ +  a ++++la++p++kr lvt++ af+ylar+ygl+ ++++ i+++    ++q
  CTQ29537.1 127 NPHAWMSADNALIYVDNIRDALVKYDPPHADTYRRNAEAYKEKIRQTMAPLQARLAQLPADKRWLVTSEGAFSYLARDYGLRELYLWPINADqqgtPQQ 225
                 ***************************************************************************************9999999***** PP

                 HHHHHHHHHHTT-SEEEEETTS-THHHHHHHHHHT-EE.EEE-STSSSTSTTS.TTSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
        ZnuA 187 iaalieeikeagvkaifveplaspklaetlaeeagvkv.atlysldslgdegs.aetYidmmranleslke 255
                 ++++i+++k++++++if+e+++s+k a+++a+eag+   ++ly  dsl++++   +t++d++r  +e++++
  CTQ29537.1 226 VRKVIDTMKKERIPTIFSESTISDKPARQVAREAGAHYgGVLYV-DSLSAADGpVPTWLDLLRVTTETIVN 295
                 ***********************************998455999.******9889************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2451.09
//
Query:       CTQ29538.1  [L=273]
Description: Chelated iron transport system membrane protein YfeB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-28   98.9   0.0    5.7e-28   98.1   0.0    1.4  1  ABC_tran     ABC transporter
    5.4e-12   46.1   0.0    6.2e-05   23.0   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    2.8e-06   26.9   0.3    0.00049   19.6   0.3    2.1  1  SMC_N        RecF/RecN/SMC N terminal domain
    0.00027   21.1   0.1     0.0017   18.6   0.1    2.1  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
    0.00031   20.4   0.1    0.00079   19.1   0.1    1.7  2  AAA_29       P-loop containing region of AAA domain
     0.0054   16.9   0.0       0.02   15.0   0.0    2.0  1  AAA_33       AAA domain
  ------ inclusion threshold ------
      0.017   15.6   0.0      0.027   15.0   0.0    1.2  1  AAA_23       AAA domain
      0.025   14.7   0.0      0.057   13.5   0.0    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
      0.037   13.7   0.0      0.097   12.4   0.0    1.6  2  AAA_15       AAA ATPase domain
      0.067   13.1   0.0       0.13   12.2   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
      0.082   12.0   0.0        1.3    8.0   0.0    2.2  2  T2SSE        Type II/IV secretion system protein
      0.096   12.3   0.0       0.27   10.8   0.0    1.7  2  AAA_25       AAA domain
       0.17   12.5   0.0       0.42   11.2   0.0    1.6  1  AAA_18       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   4.1e-31   5.7e-28       1     136 [.      24     171 ..      24     172 .. 0.89

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 4.1e-31
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSB..HHHH.................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx.................x RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpelt..vren.................e 80 
                 l++ s+++ +g++ a+vG nG+GKStL+k+l+g ++   Gei + g+++++      ++ ++++pq ++++      v++                   
  CTQ29538.1  24 LRDASFSVPRGSIAALVGVNGSGKSTLFKALMGFVRVGHGEIAILGQPVNR---ALRQNLVAYVPQSEEVDWSFPvlVEDVvmmgryghmgwlrrakpR 119
                 6789*********************************************99...8888999*****95555544421555599********99998755 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++e +++al+++g++e++++ +     +LSgGqk+rv lara++++ +++llDEp+
  CTQ29538.1 120 DREIVDAALARVGMSEFRHRQI----GELSGGQKKRVFLARAIAQQGQVILLDEPF 171
                 5555******************....*****************************7 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.3e-07   0.00017       1      22 [.      36      57 ..      36      96 .. 0.82
   2 !   23.0   0.0   4.5e-08   6.2e-05     233     299 ..     140     203 ..     115     207 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.3e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldll 22
                +++l+G NgsGKS+L++al ++
  CTQ29538.1 36 IAALVGVNGSGKSTLFKALMGF 57
                689****************443 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 4.5e-08
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299
                 ++ elS G+k+  +l+ a++++     ++l+DEp +g + +  +r++ ll+el+++g   +++TH+ 
  CTQ29538.1 140 QIGELSGGQKKRVFLARAIAQQG---QVILLDEPFTGVDVQTEARIISLLRELRDEGCTMLVSTHNL 203
                 6889999**99988888888777...9**************************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3   3.6e-07   0.00049      25     203 ..      35     207 ..      22     220 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.6e-07
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEE..EETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-H. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitf..dnedkklkiekeevsisrrvkrkgeseykingkevtk. 120
                 s+ a+vG NGSGKs l+ A+   +G+     +r  + +  i  +  ++++ +  v+ +   ++ d ++++  e+v+++ r  + g     + + + +  
  CTQ29538.1  35 SIAALVGVNGSGKSTLFKAL---MGF-----VRVGHGEIAILGQPVNRALRQNLVAYVPqsEEVDWSFPVLVEDVVMMGRYGHMGW----LRRAKPRDr 121
                 6889***************9...784.....4445554444443333333333333332114444446666666666655555554....333333330 PP

                 HHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
       SMC_N 121 kevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemle 203
                 + v   l+++g+s+       +LSgG+k+ v la  +A    ++  + llDe     D +  +++ +ll+e +++ + ++v +++ + ++
  CTQ29538.1 122 EIVDAALARVGMSEFrhrqigELSGGQKKRVFLARAIA----QQGQVILLDEPFTGVDVQTEARIISLLRELRDEgCTMLVSTHNLGSVS 207
                 33444555555544344444489999999887776555....444578999999999999999999999998887688888888766655 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.2e-06    0.0017      24      89 ..     135     187 ..     119     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.2e-06
     SbcCD_C  24 kelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 +  +r++g+lSGG+k     + la a+a++ +           ++LDE F ++D ++ a++++ll+
  CTQ29538.1 135 EFRHRQIGELSGGQK---KRVFLARAIAQQGQV----------ILLDEPFTGVDVQTEARIISLLR 187
                 44799**********...566677667666555..........********************998 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   5.7e-07   0.00079      15      43 ..      27      55 ..      14      62 .. 0.79
   2 ?   -3.2   0.0       5.4   7.4e+03      15      31 ..     210     226 ..     199     228 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 5.7e-07
      AAA_29 15 htieidlkg.atlltGpsGsGKSTllDAiq 43
                 ++++  +g +  l+G +GsGKSTl+ A++
  CTQ29538.1 27 ASFSVP-RGsIAALVGVNGSGKSTLFKALM 55
                556665.45599*************99876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.4
      AAA_29  15 htieidlkgatlltGps 31 
                  ++++ +kg++l +Gp+
  CTQ29538.1 210 CDYTVMVKGTVLASGPT 226
                 45566667888888876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.5e-05      0.02       4      33 ..      39      76 ..      36     200 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-05
      AAA_33  4 lvGlpGsGKstlaerllkklgavllssdt...........l 33
                lvG++GsGKstl + l+   g+v++   +           l
  CTQ29538.1 39 LVGVNGSGKSTLFKALM---GFVRVGHGEiailgqpvnraL 76
                89**************8...666665544444444446663 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0     2e-05     0.027      21      39 ..      36      54 ..      23      57 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2e-05
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                + +++G NG+GK+T++ A+
  CTQ29538.1 36 IAALVGVNGSGKSTLFKAL 54
                67899************98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.1e-05     0.057       2      22 ..      37      57 ..      36      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.1e-05
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                +a+vG   +GKStL++al+g 
  CTQ29538.1 37 AALVGVNGSGKSTLFKALMGF 57
                589***************983 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     7e-05     0.097      25      47 ..      36      58 ..      24      77 .. 0.86
   2 ?   -1.9   0.0       1.5   2.1e+03     321     365 ..     159     202 ..     149     203 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7e-05
      AAA_15 25 ltvliGkNnsGKSsilealdlFl 47
                +  l+G N+sGKS++ +al  F 
  CTQ29538.1 36 IAALVGVNGSGKSTLFKALMGFV 58
                678***************97776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
      AAA_15 321 eeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                  ++  ++l++EP +    q    +i ll+el +++ +  +++TH+
  CTQ29538.1 159 AQQGQVILLDEPFTGVDVQTEARIISLLRELRDEG-CTMLVSTHN 202
                 34558889999988888899999999999999888.589999997 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.4e-05      0.13      97     125 ..      32      60 ..       2      68 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.4e-05
                  CTTSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallpelel 125
                   ++++++lvG  G GKStL +al++  ++
   CTQ29538.1  32 PRGSIAALVGVNGSGKSTLFKALMGFVRV 60 
                  456999*****************986555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00092       1.3     134     184 ..      39      88 ..       8     102 .. 0.82
   2 ?    1.9   0.0     0.068        94     114     140 ..     202     228 ..     125     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00092
       T2SSE 134 vsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnakka 184
                 + G  gsGK+tl  al+ ++   + +i ++  pv   l+++ +  + ++ +
  CTQ29538.1  39 LVGVNGSGKSTLFKALMGFVRVGHGEIAILGQPVNRALRQNLVAYVPQS-E 88 
                 66999****************9999999999999988888766666555.4 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.068
       T2SSE 114 lkekiaevlrkavrerglilvsGgTgs 140
                 +   ++e+  + v  +g++l sG+T +
  CTQ29538.1 202 NLGSVSEFCDYTVMVKGTVLASGPTET 228
                 4477889999999***********975 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0002      0.27      30      59 ..      31      60 ..      28      90 .. 0.85
   2 ?   -2.2   0.0       1.8   2.5e+03     166     188 ..     180     201 ..     156     202 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
      AAA_25 30 lpagelallaGapgtGKttlaldlalavat 59
                +p+g++a+l+G  g+GK+tl   l+  v  
  CTQ29538.1 31 VPRGSIAALVGVNGSGKSTLFKALMGFVRV 60
                69******************9888776664 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.8
      AAA_25 166 galvealeriarrtgaavllvhH 188
                 +++++ l+++ r  g++ l+  H
  CTQ29538.1 180 ARIISLLREL-RDEGCTMLVSTH 201
                 6778888888.567888887777 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00031      0.42       3      32 ..      39      76 ..      38     130 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00031
      AAA_18  3 ltGtpGvGKttlakeLskrlgf...........gvnlrdva 32
                l G+ G+GK+tl k+L   +gf           g+ ++  +
  CTQ29538.1 39 LVGVNGSGKSTLFKAL---MGFvrvghgeiailGQPVNRAL 76
                78**************...3444445444555644444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       356  (0.0198561); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2057.47
//
Query:       CTQ29539.1  [L=282]
Description: Chelated iron transport system membrane protein YfeC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-83  278.1  25.2    7.8e-83  277.9  25.2    1.0  1  ABC-3     ABC 3 transport family
      3e-10   39.6  23.6      3e-10   39.6  23.6    1.6  2  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.9  25.2   8.7e-87   7.8e-83       2     257 ..      10     264 ..       9     265 .. 0.99

  Alignments for each domain:
  == domain 1  score: 277.9 bits;  conditional E-value: 8.7e-87
       ABC-3   2 yeflqrallasilvslacallgsfvvlrrqsllgdalsHaalpGvalayllgvnlllgailvgliaavalellkrktklkedtaigivlsvflalglvl 100
                 y+++++a+++s+lv+ +ca+l+++++l+++sl+gdalsH+ +pGva ay+lg++++lga+l+g +aa  + +l+++++lked++ig+++s+f+++gl++
  CTQ29539.1  10 YYYMLNAMWVSALVGGVCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFALGAFLSGGLAAGSMLFLQQRSRLKEDAIIGLIFSSFFGIGLFM 108
                 789************************************************************************************************ PP

       ABC-3 101 vslikkskvdldsyLfGniltisqedliliaiieavvllllllfwkelllitfdeelAkveglsvkllkllllalialavvvalqavGviLvialliiP 199
                 vsl++ ++v+++ +++Gnil+i+ ed+i++a+i  + +++lll+wk+l++++fde++A+++gl+++ lkll+++l+a++ v+alq+vG+ Lvi l+++P
  CTQ29539.1 109 VSLNP-TSVNIQTIILGNILAIAPEDIIQLAAIGFISMAILLLKWKDLMVTFFDEHHARSIGLNTRGLKLLFFTLLAACTVAALQTVGAFLVICLVVTP 206
                 *****.********************************************************************************************* PP

       ABC-3 200 aatArrltrslesllivAillglvsvvaGlllSyyldlatGavivlvatllfllallv 257
                 +atA +lt+++ +ll++A+++g +++++G++lSyyld atG++iv+ +tllfl+ +++
  CTQ29539.1 207 GATAWLLTDRFPRLLAIAVAIGSLTSFFGAWLSYYLDGATGGIIVVAQTLLFLITFIF 264
                 *******************************************************997 PP

>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2     0.099   8.9e+02     102     122 ..      16      36 ..      10      61 .. 0.67
   2 !   39.6  23.6   3.3e-14     3e-10     103     304 ..      64     257 ..      38     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.099
       FecCD 102 alplaaflgallalllvllla 122
                 a+++ a++g+++a+l  +l+ 
  CTQ29539.1  16 AMWVSALVGGVCAFLSCYLML 36 
                 455666666666665555544 PP

  == domain 2  score: 39.6 bits;  conditional E-value: 3.3e-14
       FecCD 103 lplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllllarkld 201
                  +l afl++ la++ +l+l    ++++ +   ++G+++s++++ +  +++ l n  ++ +i++++lG++  +  ++++ l+++ ++++++lll  ++l 
  CTQ29539.1  64 FALGAFLSGGLAAGSMLFLQ---QRSRLKEDAIIGLIFSSFFG-IGLFMVSL-N-PTSVNIQTIILGNILAIAPEDIIQLAAIGFISMAILLLKWKDLM 156
                 45678888888888888888...55555566788******996.55566655.5.58999*************************************** PP

       FecCD 202 llalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLiv.PhiarllvgadhrkllplsallGallllladllarlllsptelpvgivta 299
                 +  +++  A+s+G+n++ ++ll++ l a++t +a   vG    ++L+v P     l+ +++ +ll +++ +G+l   +  +l+ +l   t    gi++ 
  CTQ29539.1 157 VTFFDEHHARSIGLNTRGLKLLFFTLLAACTVAALQTVGAFLVICLVVtPGATAWLLTDRFPRLLAIAVAIGSLTSFFGAWLSYYLDGATG---GIIVV 252
                 **********************************************983556666777***********************9988854444...44444 PP

       FecCD 300 liGap 304
                 +   +
  CTQ29539.1 253 AQTLL 257
                 43333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2097.51
//
Query:       CTQ29540.1  [L=284]
Description: Chelated iron transport system membrane protein YfeD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-74  251.2  31.4    1.3e-74  251.0  31.4    1.0  1  ABC-3     ABC 3 transport family
    0.00023   20.3  29.3    0.00023   20.3  29.3    1.5  1  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.0  31.4   1.4e-78   1.3e-74       1     256 [.      10     264 ..      10     266 .. 0.99

  Alignments for each domain:
  == domain 1  score: 251.0 bits;  conditional E-value: 1.4e-78
       ABC-3   1 qyeflqrallasilvslacallgsfvvlrrqsllgdalsHaalpGvalayllgvnlllgailvgliaavalellkrktklkedtaigivlsvflalglv 99 
                 q++f+++a++ si+v++ call++f+vl++++l+gda+sHa++pGv+lay++g+++++ga+++gl++av++++l  +++lk dt++giv+s +++ glv
  CTQ29540.1  10 QFPFMVNAIAISIVVAIPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAYIIGIPFAIGAFIAGLLCAVTTGFLDDNSRLKRDTIMGIVFSGMFGAGLV 108
                 689************************************************************************************************ PP

       ABC-3 100 lvslikkskvdldsyLfGniltisqedliliaiieavvllllllfwkelllitfdeelAkveglsvkllkllllalialavvvalqavGviLviallii 198
                 l   i+ s+v+ld++LfG++l+is +d+ ++++i++v+ l++ l+w+++ll  fd+++Ak++gl+  ll++ ll++ial++v++lq vG+iL i+lli+
  CTQ29540.1 109 LYVAIQ-SDVHLDHILFGDMLGISLRDIGQTTAIALVIALIIGLKWRDFLLHAFDPTQAKASGLRGGLLHYGLLCMIALTIVATLQSVGIILSISLLIA 206
                 ******.******************************************************************************************** PP

       ABC-3 199 PaatArrltrslesllivAillglvsvvaGlllSyyldlatGavivlvatllfllall 256
                 P+a+A++l+r++ + l++A+++++  ++ G++l +yld a+ ++iv+++t+lf++a++
  CTQ29540.1 207 PGAIALLLVRRFIHALLLAVAVAIGCSAGGVWLAFYLDSAPAPTIVVLFTALFVVAFV 264
                 *******************************************************997 PP

>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3  29.3   2.6e-08   0.00023      85     305 ..      43     263 ..      27     270 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.6e-08
       FecCD  85 lgavlalllllgslslfalplaaf.lgallalllvllla.rkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvll 181
                 +g +++ +++ ++  l++++ + f +ga++a ll  + +     +++ ++  ++Gi++s +++a   l +++   ++   + ++l+G++ g+s++++  
  CTQ29540.1  43 MGDAMSHAVF-PGVVLAYIIGIPFaIGAFIAGLLCAVTTgFLDDNSRLKRDTIMGIVFSGMFGAGLVLYVAI---QSDVHLDHILFGDMLGISLRDIGQ 137
                 4555555555.5666666666666466666655555444456788888889*************99999988...45567888899************* PP

       FecCD 182 llvllllllllllllarkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGL.ivPhiarllvgadhrkllplsallGallllla 279
                   +++l+++l++ l  r++ l a++ ++Ak+ G++   + + ll+++al + ++   vG+i  + L i+P  + ll+ +++ + l+l++ +++ + +  
  CTQ29540.1 138 TTAIALVIALIIGLKWRDFLLHAFDPTQAKASGLRGGLLHYGLLCMIALTIVATLQSVGIILSISLlIAPGAIALLLVRRFIHALLLAVAVAIGCSAGG 236
                 ****************************************************************97367778888888999999999999999999999 PP

       FecCD 280 dllarllls.ptelpvgivtaliGapf 305
                  +la +l s p+ + v ++tal+ + f
  CTQ29540.1 237 VWLAFYLDSaPAPTIVVLFTALFVVAF 263
                 999988877666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2022.06
//
Query:       CTQ29541.1  [L=113]
Description: hypothetical protein CH1034_280146 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-40  136.5   1.3    4.6e-40  136.3   1.3    1.0  1  YgbA_NO   Nitrous oxide-stimulated promoter
  ------ inclusion threshold ------
      0.047   12.7   0.2       0.05   12.6   0.2    1.1  1  AFOR_C    Aldehyde ferredoxin oxidoreductase, domains 2 & 3


Domain annotation for each model (and alignments):
>> YgbA_NO  Nitrous oxide-stimulated promoter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   1.3   5.1e-44   4.6e-40       1     104 [.       3     104 ..       3     107 .. 0.95

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 5.1e-44
     YgbA_NO   1 kklerekktveamiklyckkkhktkkeelceeckelleyaekrldkCpfgeekttCskCkvHCYkpemrekirevmryagPrmllkhPilairHlleek 99 
                 k++erek t++ mi+ly +++ +++     +++++l +ya krldkC fge+k++C++C+vHCY+p++re+++++mr+agPrml++hPil+irHll+++
  CTQ29541.1   3 KRIEREKMTIQRMIALYQRRSPEAQ--ADDAHYQALNAYADKRLDKCVFGENKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTIRHLLDDR 99 
                 5899****************99888..77789******************************************************************* PP

     YgbA_NO 100 kekkk 104
                 ++++ 
  CTQ29541.1 100 RPVPP 104
                 99875 PP

>> AFOR_C  Aldehyde ferredoxin oxidoreductase, domains 2 & 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   5.6e-06      0.05      57      93 ..      42      80 ..      13      88 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.6e-06
                HHHHHHTEEEE.E.-TT-SS--EEEEE.......ETEE- CS
      AFOR_C 57 ealeekylvkneg.CfsCpiaCgrevkveegkk.vkveg 93
                ++l++ +  +n+  C +Cp++C++  k ee k+ +   g
  CTQ29541.1 42 KRLDKCVFGENKPaCKQCPVHCYQPAKREEMKQiMRWAG 80
                55555333333336************9888876554445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 862.48
//
Query:       CTQ29542.1  [L=295]
Description: putative LysR-family transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-29  101.3   0.6    6.5e-29  100.8   0.6    1.2  1  LysR_substrate  LysR substrate binding domain
    6.3e-17   61.3   0.2    1.3e-16   60.3   0.2    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.11   13.1   0.0       0.16   12.6   0.0    1.3  1  DUF3800         Protein of unknown function (DUF3800)


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.6   1.1e-32   6.5e-29       3     205 ..      90     294 ..      88     295 .] 0.95

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 1.1e-32
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEE..EEEEEEEEETTSGGGGSSS CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLa..eeplvlvaspdhpLargep 95 
                       +g Lrig++++l ++++ + la+f++++P+++l++v    +el +ll+ +++D+a+++  p+d+ +++r     ++++++va+++hpL++ + 
      CTQ29542.1  90 AGKGILRIGCVSSLLTSHFIDKLAAFHQHHPQIHLRIVDRIDSELYKLLLMHDIDIALCGPLPHDEKIVVRGKInwQDRICIVARQHHPLHQAAD 184
                     56899**********************************************************9999988865435******************* PP

                     ECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEEC.EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEET CS
  LysR_substrate  96 vsledLadeplilleegsglrdlledalreaglkp.rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrk 189
                     v+le+  d+p+i+ +++s+    l d +r+++l+  ++++e+ s +a++a+    + ++ +p+ + r+e a g l+  +l++  + r++y++ + 
      CTQ29542.1 185 VTLEAMLDYPWIMPPPSSTPMNILADIFRARQLPCpQPVIECASSSAIKAFLCESDLLTSMPAPVYRHEEALGLLRPFELEGSVFIRDFYAYSHF 279
                     *******************9999999*****99988**********************************************8888********* PP

                     TCCCHHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidflr 205
                     g  ls a+ ++i++l+
      CTQ29542.1 280 GV-LSGAALQLIQHLK 294
                     98.*********9997 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.2   2.1e-20   1.3e-16       1      59 [.       5      63 ..       5      64 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 2.1e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                ++q+++f++va+eg++t AAe++g++q+ +sr + +LE+ l + LfeR+++g+ L e+G
  CTQ29542.1  5 FKQIQAFITVAREGNMTLAAEKMGITQSGLSRLLLSLEADLSASLFERHKHGMALSEYG 63
                589******************************************************99 PP

>> DUF3800  Protein of unknown function (DUF3800)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.7e-05      0.16      44     114 ..      91     187 ..       6     192 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.7e-05
     DUF3800  44 y..............krlleriakflkkndliksdeesdesilivldkkkkkekakkeleilld........................esvkfvdSkes 104
                                +++++++a f +         + ++++ iv++ +++  k++ +     d                        + ++ v  +++
  CTQ29542.1  91 GkgilrigcvsslltSHFIDKLAAFHQH--------HPQIHLRIVDRIDSELYKLLLMH----DidialcgplphdekivvrgkinwqDRICIVARQHH 177
                 2555555555555555666666666555........46666666666644433322222....2333344555556666666667777*********** PP

     DUF3800 105 rglQlADlva 114
                 ++ Q+AD+  
  CTQ29542.1 178 PLHQAADVTL 187
                 *******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2396.45
//
Query:       CTQ29543.1  [L=26]
Description: hypothetical protein CH1034_280148 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (26 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       108  (0.00602376); expected 358.6 (0.02)
Passed bias filter:                       99  (0.00552178); expected 358.6 (0.02)
Passed Vit filter:                         3  (0.000167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.22s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 231.93
//
Query:       CTQ29544.1  [L=313]
Description: Transport protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-28   99.8  38.0    8.1e-15   54.1  17.2    2.0  2  Mem_trans  Membrane transport protein


Domain annotation for each model (and alignments):
>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0  13.0   1.9e-18   3.5e-14       2     149 ..       9     155 ..       8     171 .. 0.92
   2 !   54.1  17.2   4.5e-19   8.1e-15     241     383 ..     170     305 ..     165     309 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 1.9e-18
   Mem_trans   2 vleavvplyvimllgYgsvkwvkiftpdqcsginrfVvlfavPllifhfisqnnpyemllrfiladvlvklivlillllgallsk.ifkgslewtitlf 99 
                 ++ a++p+++ +++gY+s+k+ k f+ +q+  in++V+l+a+Pl if++++   p  +++++  + v ++l+ ++++++  l+++ +f+++l  + +  
  CTQ29544.1   9 ISGAILPVIITVIIGYISGKR-KDFNWQQAGDINKIVMLYALPLSIFSNMVM-TPRHIVMTMGPVAVAIILALILSFVIPLLVARyLFRRDLALSTLQA 105
                 5679*****************.*****************************9.6677789999999999999999999999999989************ PP

   Mem_trans 100 slstlpNtlvlgipllkalygeygvslmvqvvvlqciiiytlllflfeyr 149
                 + + +p + ++g ++l  l+g+ + sl++++++ q+++ + l+++l+   
  CTQ29544.1 106 LAIGSPAVPFIGTSVLAFLFGTVSASLITVSSITQNVFQLPLVMILMSVA 155
                 **************************************999999988754 PP

  == domain 2  score: 54.1 bits;  conditional E-value: 4.5e-19
   Mem_trans 241 rklirnPntyssllglilslvsfkwnvimpkiiqksisilgdaglpmalfslGlfLalqpkkiacgnsvatfalavRlilgPlvmlvavlavgLrgsll 339
                 + +i++P ++s++++li++l  + ++    ++i+ s+ +lg+a+ ++alf+ G  L+++   i+  +      +++R il+P + ++++l +g   +++
  CTQ29544.1 170 VNAIKQPVVWSPVIALIIVLADIHIP----QTISMSLGLLGKASGGLALFAAGIVLYTRSIVITTATII---TVIARNILVPGACYLILLKMGFSMEQI 261
                 5789****************999988....***************************996444444444...39************************* PP

   Mem_trans 340 lvaivqaAlPqgivlfviAkeynvherelstllifgmlialpit 383
                 +++++ +A+P g  +++iA +y ++e+e+++ + ++++ +++++
  CTQ29544.1 262 KEVVLTMAIPVGSIAIIIAMQYKTGEQEMASTMALSIIASIITM 305
                 **************************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1134  (0.0632495); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 2658.78
//
Query:       CTQ29545.1  [L=569]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-45  152.7   0.4    1.9e-41  141.6   0.0    2.5  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    2.2e-19   69.8   0.0    4.2e-19   68.8   0.0    1.5  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    4.2e-08   33.0   0.0    1.2e-07   31.5   0.0    1.9  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
     0.0025   16.8   0.0     0.0037   16.3   0.0    1.2  1  E1_dh         Dehydrogenase E1 component


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   0.0   4.1e-45   1.9e-41       2     169 ..       7     187 ..       6     190 .. 0.96
   2 !    8.9   0.1   0.00024       1.1      84     159 ..     471     565 ..     436     568 .. 0.82

  Alignments for each domain:
  == domain 1  score: 141.6 bits;  conditional E-value: 4.1e-45
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT......TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--E CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeq.....girvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPl 93 
                   ++ae+l+++L+al+v ++f++ G+++ p+++a+++++       ++v + hE++a+++A+gy+  tgk+++v+v++ +G++na +++++ + ++iP+
    CTQ29545.1   7 SAAELLLHRLQALDVAYIFINSGTDYPPVIEAWAKARaigqkVPELVICPHENAAIGMAHGYYLGTGKVQAVMVHTNVGLANAACGVINLANSNIPV 103
                   579**********************************9999889***************************************************** PP

                   EEEEEE--CCCHH........S..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N  94 lvlsgdrptslrg........qgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevd 169
                   l++ g++p s+ +         g+ q++ dq+al+r+ +k+ ++++ ++++ e+++rA+++a s ++gPvyl+lp++ l e+++
    CTQ29545.1 104 LIFGGRTPISEHShfgcrntpIGYGQEMRDQAALIRESVKWDFELRLADQIGEHVDRAWAIASSLPKGPVYLSLPREPLCETFA 187
                   ********************999999566***********************************************99888765 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00024
                   HHHHHHT--EEEEEEE--CCCHH....................S..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEE CS
  TPP_enzyme_N  84 aeAkvdriPllvlsgdrptslrg....................qgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylel 159
                   + A v ++P+lv++g+++                           ++    d +a++++   +a  v+++e+lp +l++A+     +r++ v++++
    CTQ29545.1 471 HIAEVMKLPVLVVVGNNGGWGAVaggtkalypdgyaaraetipATAFTTSPDFAAIAASSRAAALSVSRAEDLPGVLEEAVSLI-RTRRQSVLVDV 565
                   56777888888888888887777778888888888888877776666657799*******************************.88888999887 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   9.3e-23   4.2e-19      18     153 .]     421     565 ..     409     565 .. 0.87

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 9.3e-23
                   SSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHT.GGGHHHHHHT.T-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB......B CS
  TPP_enzyme_C  18 prsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmi.lqelatavrr.nlpitvvvlnNegygmtggqqepfggkrksgpagk.....d 107
                     sy+ +++ g +G +lp+A+G++la++++ ++a vGDG++l+       ++++  +lp++vvv nN+g+g++ g ++  + + +++ a+       
    CTQ29545.1 421 AESYYQEALAGGLGEALPIALGLQLARREELIIAAVGDGSYLFAnPAVCHHIAEVmKLPVLVVVGNNGGWGAVAGGTKALYPDGYAARAETipataF 517
                   67899999******************9999**********999955666666664477******************999999888887777999987 PP

                   S----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHH....CSSSEEEEEE CS
  TPP_enzyme_C 108 lkpvdfaklaealGakgarvekadveeleealkeal....ekkgpaliev 153
                   ++++dfa++a++  a +++v++a  e+l  +l+ea+    ++++++l++v
    CTQ29545.1 518 TTSPDFAAIAASSRAAALSVSRA--EDLPGVLEEAVslirTRRQSVLVDV 565
                   8899************9999999..**********988887778888886 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.1   9.4e+03       8      24 ..      96     112 ..      95     116 .. 0.76
   2 !   31.5   0.0   2.7e-11   1.2e-07       1     113 [.     211     313 ..     211     340 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.1
                   HHH-SSEEEEE-CHHCH CS
  TPP_enzyme_M   8 lkaakrpvilvGggvar 24 
                   l+++  pv+++Gg++  
    CTQ29545.1  96 LANSNIPVLIFGGRTPI 112
                   66788899999998755 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 2.7e-11
                   HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   i++aae+++ a+ pvi++  g+++++  + l +l++++ iP v+ +    +++ d+pl +g       +  +  l++aD++l++ ++  ++   g  
    CTQ29545.1 211 IARAAEAIACARHPVIFAQRGARTAEGFARLDSLVREWAIPLVEYWGTEVTLSADNPLLAG-------ADPSVWLADADVILVVDSQAPWMIAEG-- 298
                   799******************************************************9865.......33344558********99999965544.. PP

                   TTTTTT-.EEEEEESSC CS
  TPP_enzyme_M  98 pefapea.kiihididp 113
                      ++++ ++i+  +dp
    CTQ29545.1 299 --DCRQDcTVIQMGPDP 313
                   ..344566888888887 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.3e-07    0.0037     113     208 ..     439     534 ..     362     550 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.3e-07
                 HHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEE.SEETTEEHHHH-S---GGG..TTTTS-EEEEETTSHHHHHHHHHHHH CS
       E1_dh 113 ialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNN.kygisTeaekasaskeladrargvgipglrVdgnDplavyeAvkfAa 208
                 ial  + +  +e+ i+ +GDg+    + +   ++a+++klpv+ vv NN ++g      ka   + +a+ra    +  ++  + D+ a+ + +++Aa
  CTQ29545.1 439 IALGLQLARREELIIAAVGDGSYLFANPAVCHHIAEVMKLPVLVVVGNNgGWGAVAGGTKALYPDGYAARAETIPATAFT-TSPDFAAIAASSRAAA 534
                 7888899999************8888889999**************9994599999999999999999966655555555.5789999998888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4242.34
//
Query:       CTQ29546.1  [L=97]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-32  111.8   0.0    1.5e-32  111.6   0.0    1.1  1  Rdx       Rdx family
  ------ inclusion threshold ------
      0.071   13.5   0.0      0.071   13.5   0.0    1.0  1  Prim-Pol  Bifunctional DNA primase/polymerase, N-terminal


Domain annotation for each model (and alignments):
>> Rdx  Rdx family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.0   1.7e-36   1.5e-32       2      74 .]       7      79 ..       6      79 .. 0.99

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 1.7e-36
                EEEEEETTTTTHHHHHHHHHHHHHHCCCCSSEEEEEEESTT-EEEEETTEEEEEHHHHTSS--HHHHHHHHHH CS
         Rdx  2 vtIeYCtqCkwmlraaelaqellstfpeslgevalqpstgGaFeVtldgelvwsrkeeggfpetkelkqrvrd 74
                +tI+YC+qC+wmlra ++aqell tf++++++v+l p+tgG+F++ +dg+++w+rk++ggfp+++elk+rvrd
  CTQ29546.1  7 ITITYCSQCNWMLRASWMAQELLHTFSTDIASVTLVPGTGGIFTIDVDGQQIWERKQDGGFPDAAELKRRVRD 79
                89*********************************************************************97 PP

>> Prim-Pol  Bifunctional DNA primase/polymerase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.9e-06     0.071      22      80 ..       7      77 ..       1      95 [. 0.79

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.9e-06
    Prim-Pol 22 lg......kkwekdattdpeqirawwkkhpranvglatgpsglvvlDvDgke.......agaealarLaree 80
                ++      ++w  +a+  ++++ + ++++  a v l+ g+ g++ +DvDg++       +g    a+L r+ 
  CTQ29546.1  7 ITitycsqCNWMLRASWMAQELLHTFSTDI-ASVTLVPGTGGIFTIDVDGQQiwerkqdGGFPDAAELKRRV 77
                555566668999999999999999999766.5999999*************998888887777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 787.77
//
Query:       CTQ29547.1  [L=27]
Description: hypothetical protein CH1034_280152 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (27 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       178  (0.00992805); expected 358.6 (0.02)
Passed bias filter:                      105  (0.00585643); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.24s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 215.63
//
Query:       CTQ29548.1  [L=787]
Description: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-39  135.8  40.0    4.1e-39  135.8  40.0    2.1  2  TonB_dep_Rec  TonB dependent receptor
    7.1e-11   42.6   5.6    2.5e-10   40.9   5.6    1.9  1  Plug          TonB-dependent Receptor Plug Domain
    7.7e-08   31.7  17.9    7.7e-08   31.7  17.9    2.4  2  OMP_b-brl_3   Outer membrane protein beta-barrel family


Domain annotation for each model (and alignments):
>> TonB_dep_Rec  TonB dependent receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0  25.1      0.21   1.2e+03      36     180 ..     155     328 ..      98     351 .. 0.55
   2 !  135.8  40.0   6.9e-43   4.1e-39      97     469 ..     355     785 ..     326     786 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.21
                   E...EEEEEEEEEECCCEECCCEEECECCEEEEEEEEEEE..EEEEEEEEEEEEEEEEEEEEEEEEEE...............EEEEEEEE...CEE CS
  TonB_dep_Rec  36 r...gylgtnplyygdnysetdnkrlrlgydydlddnlsw..klslraglnYsstdgdsdynnsglgg...............grsynrdn...dyy 109
                   +     +g+ + ++g++ +et n     ++ +   + +++   ++ +  ++Y+s +++ d    +  g               +    r++   +  
    CTQ29548.1 155 YidpYMYGSVDIQSGATSTETANSAIGGNVSFRPKSADDYlrPGKTS-AFGYRSGYDSADRSWHN--GvtvaggdeflrgilvY---SRRDgqeTEN 245
                   23332222222222222222222222222222222222233322222.23333222222222221..12234445666663332...3333322334 PP

                   EEEEEEEEEEEEEEEEE..EE.......EEEEEEEEEEE.EEEEECCBEESCCTC..CSEEEEEEEEEEEEEEEEEEEEETTE CS
  TonB_dep_Rec 110 glgnvlaaeldlngdlw..fG.......snladgldyrk.lsddgydaydplnps..gdasdsvdrdsyglyaqdnikltdrl 180
                   + g+v a+++++  d +   G       + l++ +dy+  ++ + yd++d+ ++s  g+a+ +++++++gl + d+++  +++
    CTQ29548.1 246 NSGTVDAYPANWHSDAFlaSGiwqpndeHKLTSTFDYYHkTNHTHYDTWDSSGNStiGTANQTSQTRRWGLSLKDDWTPMNDY 328
                   4557778888776666655335557899**********64555799999999999**9********************95555 PP

  == domain 2  score: 135.8 bits;  conditional E-value: 6.9e-43
                   EEEEEEEEEECEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEEEEEEEEECCBEESCCTC...CSEEEEEEEEEEEE..EEEEEEEE...ETTEEEEE CS
  TonB_dep_Rec  97 gggrsynrdndyyglgnvlaaeldlngdlwfG.snladgldyrklsddgydaydplnps...gdasdsvdrdsygl..yaqdnikl...tdrltltl 184
                   +  ++ n+++    ++ +++++  l  +  +G + l++g++ + +++ ++++  ++ ps      ++  d++sy l  ++qd i++   + ++ + +
    CTQ29548.1 355 RRMQTVNSNY----DTDTWGLQTALAKT--LGrHDLSAGFNASTSKT-QRPFSQSPIPSvysEIMQPEADSRSYTLggFVQDKINFdldSHNFAIIP 444
                   1112222222....22333333333333..55555555544443333.555555555556663555555666665445****999987656****** PP

                   EEEEEEETTCSSSS..................EEECCCEEEEEEEEEEEECETTEEEEEEEEEEEE-STTCTTCEEEE.....CCCCCEEEECSTT- CS
  TonB_dep_Rec 185 GlRydhysvfgkdlrag...............afsrsgsafsPsvglryrptddlslrasysrgfraPslgelyaggs.....ngaggalsngnpdL 261
                   G+R  h s+++ +l                    ++s+++++Ps+ + y++t+ l+ +  y rg ++P+ ++ly+++       g++++  +gn+dL
    CTQ29548.1 445 GVRVVHQSTKPENLSDLaanssvlsessvanlYGKNSDTQVLPSLTFQYDLTPRLMTYLQYQRGAQFPNASQLYGSWNlgssyAGSQQYALIGNTDL 541
                   ****9999996666666666666666777779889999*************************************999999997888888889**** PP

                   --EEEEEEEEEEEEEE.TTEEEEEEEEEEEEEEEEEEESSSSCSTTTCS..........EEEEEEEEEEEEEEEEEEEEEEETTEE........EEE CS
  TonB_dep_Rec 262 kPEtsknyelGlkldd.drlnltlayFridiknfittdpdgpslgglgd..........fqyqNvgkarikGvElelsyrltpgWg........lgl 339
                   k Ets+n+e Glk      ++l  a+F++ +knfi+++  +  ++  +           +q  N +ka+i+G E++ +++    +g        l++
    CTQ29548.1 542 KTETSDNLEWGLKGEVtEGITLRTALFYNSYKNFIAYTRYTRANNPGQFtnvpsniytiYQAENRDKAYIYGGEISTKFN----FGtwfeqvdgLSA 634
                   *************44456666*****************9999988877799*****988888888**********99999....5555579877655 PP

                   EEEEEEEEEECEC.EEECTTTTSSTTEESEEEEEEEEEECSEEEEEEEE..........SEEEE...EEECCSSEEEEECE.CCEEEE--EEEEEEE CS
  TonB_dep_Rec 340 sgggytYydagdd.sdaddggnplpnvPkhtanlgltYkfpaggWgagl..........llaga...rYvavggrrygdaa.ntfrrvpgYtlldls 421
                   + + + Y++ + + s   d+  +l++v + +a +g+ +++pa ++g  l             ++   +Y  +g+ + +da+ + + rvpgY+ ld +
    CTQ29548.1 635 TLA-LGYSEGKSKsSYSGDKYVDLDSVAPMKAIVGVAWDDPAKRYGTALtatfvkgkqaT--ATnreSYSNSGS-AITDASsDYM-RVPGYGMLDWT 726
                   555.6676664444555566666888************7778887733344547664331..223346665566.6667775555.*********** PP

                   EEEEESSSEEEEEEEESTTETCSCEEESTT...........TTTCCEB--SEEEEEEEE CS
  TonB_dep_Rec 422 lgYklpknltlslgvnNLfdkryyassgyy...........glggypgpgRtfrlglry 469
                   + +++ kn++l++gv+NL+d++y+++ ++            + + +  pgRt+ lg+++
    CTQ29548.1 727 AYWQVAKNVRLNGGVYNLTDRKYWDYLSSRnietgtnqdanDKALAVMPGRTWQLGVNV 785
                   ********************875555555579999989999999999**********97 PP

>> Plug  TonB-dependent Receptor Plug Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   5.6   4.1e-14   2.5e-10       6     107 ..      60     182 ..      55     183 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 4.1e-14
                 SSEEEEEEHHHHHHTTTSSHHHHHTTSTTEEE..........ECCCCSTTSEEEEETTB-GGCSEEEETTEEESC...........CCCSCTCGCSSBG CS
        Plug   6 pgsvsvvtaediekqgatsladalqgvpgvnv..........sssgggggassisiRGlgsnrvlvlvDGvpian...........ggsgagdlssidp 83 
                 +gs  +++a ++e++ga++++ ++++ p +++          +s+ ++gg ++++iRG++snrv++ vDG+ + n            +  + + ++idp
  CTQ29548.1  60 AGSEHSISARELENKGANDFGSIMRYEPLISAtgasggsgngKSGFDRGGYTGYNIRGMESNRVGIDVDGIAQPNatgrgyvgragLNTFGIGRDYIDP 158
                 567789*************************99866666666666666666667*******************99887766655544444449999*** PP

                 GGEEEEEEEESSCHCTTSSTGSSE CS
        Plug  84 edierievlkGpasalyGsdaigG 107
                  +  ++++ +G+ s+   ++aigG
  CTQ29548.1 159 YMYGSVDIQSGATSTETANSAIGG 182
                 ***********************9 PP

>> OMP_b-brl_3  Outer membrane protein beta-barrel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   2.2     0.063   3.8e+02       5      48 ..     271     309 ..     269     336 .. 0.62
   2 !   31.7  17.9   1.3e-11   7.7e-08      39     301 ..     351     647 ..     325     658 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.063
  OMP_b-brl_3   5 kkgheLtadadysknkndensditnedlnepdgaeptnnslqrn 48 
                  +++h+Lt ++dy +++n + +d+ +++ n    + +  + +q++
   CTQ29548.1 271 NDEHKLTSTFDYYHKTNHTHYDTWDSSGN----S-TIGTANQTS 309
                  56899999999999999776554443222....2.222223322 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 1.3e-11
  OMP_b-brl_3  39 eptnnslqrndndqknneytfqlDYtnplskkgkleaGykysfrntdsdfkyenldn.gefvldpslsndfdykeninAaYas....yskklgkfsyk 131
                  ++  +++q+ +++ +++ + +q+   + l+  + l+aG+ +s ++t+  f+ +   +  + + +p+     d +  ++ ++++    +     +f + 
   CTQ29548.1 351 DSVTRRMQTVNSNYDTDTWGLQTALAKTLGR-HDLSAGFNASTSKTQRPFSQSPIPSvYSEIMQPE----ADSRSYTLGGFVQdkinFDLDSHNFAII 443
                  3455678888888899*************99.******************9888765344444444....455666666666522116667779**** PP

  OMP_b-brl_3 132 aGlRaEytnikgesstt..............nesfkknyfnlfPsvslsyklndknklqlslsYyrriinRPsisqLnPfrnysdplnisq.....GN 210
                   G+R+ + ++k e+ +               n   k++ +++ Ps++++y l+++    l+   y+r  + P+ sqL    n  +++  sq     GN
   CTQ29548.1 444 PGVRVVHQSTKPENLSDlaanssvlsessvaNLYGKNSDTQVLPSLTFQYDLTPRLMTYLQ---YQRGAQFPNASQLYGSWNLGSSYAGSQqyaliGN 538
                  *******999999554222222222221111224588889**************9866666...55556********8887777766655444445** PP

  OMP_b-brl_3 211 PnLkPeftnsfelgyskkwk....ltlslsyrytndniqitvitddnnn..........vllttyeNlgksqsyglelslslnptkwws....lnanl 290
                   +Lk e ++++e g + + +    l + l+y+  ++ i  t++t++nn            ++++ eN +k + yg e+s+++n+  w++    l+a+l
   CTQ29548.1 539 TDLKTETSDNLEWGLKGEVTegitLRTALFYNSYKNFIAYTRYTRANNPgqftnvpsniYTIYQAENRDKAYIYGGEISTKFNFGTWFEqvdgLSATL 636
                  **************988633354566667788788888777666655445777777766888889**********************97322333444 PP

  OMP_b-brl_3 291 nlyynkskidg 301
                   l y++ k+++
   CTQ29548.1 637 ALGYSEGKSKS 647
                  44444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5686.92
//
Query:       CTQ29549.1  [L=343]
Description: Hemin transport protein HmuS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-80  266.7   0.6    1.2e-40  138.4   0.0    2.1  2  HemS       Haemin-degrading HemS.ChuX domain
    1.6e-63  212.5   1.6    6.9e-33  113.3   0.4    2.2  2  ChuX_HutX  Haem utilisation ChuX/HutX


Domain annotation for each model (and alignments):
>> HemS  Haemin-degrading HemS.ChuX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9   0.1     5e-41   4.5e-37       1     128 []      32     156 ..      32     156 .. 0.99
   2 !  138.4   0.0   1.3e-44   1.2e-40       2     128 .]     205     336 ..     204     336 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.9 bits;  conditional E-value: 5e-41
        HemS   1 gvseaellaaaagelatrleealealLealeelgevmalvrNegavqektGpvenlkesghwglvlded.idLrlfldqwaeafavkkptedgvvtSlq 98 
                 g+seael+aa+ g++a+rl ++++al++ale++ge ++++rNe+av+e+ G++++ + sgh+glvl+++ +dLrlfl+qwa+af+++++     ++S+q
  CTQ29549.1  32 GISEAELTAARLGHDAVRLSDDARALIAALERVGETKCICRNEYAVHEQVGQFTHQHLSGHAGLVLNPRaLDLRLFLSQWASAFHLNDNG----RQSIQ 126
                 69******************************************************************99*****************999....***** PP

        HemS  99 fFdaeGeaihkvfgerkselaawralvael 128
                 fFd++G+a++kv+++ ++++aaw++l+ae+
  CTQ29549.1 127 FFDHHGDALLKVYATTQTDMAAWETLIAEY 156
                 ***************************986 PP

  == domain 2  score: 138.4 bits;  conditional E-value: 1.3e-44
        HemS   2 vseaellaaaagelatrle.ealealLealeelg.evmalvrNegavqektGpvenlkesghwglvldedidLrlfldqwaeafavkkptedgvvtSlq 98 
                 +s++++++++ ++la+r++ +al +lLe++++ g e+m++v+N+g+vq+ tG++e+l ++  w+++++++++L+l+++ ++e+++++kpt+dg+vtS++
  CTQ29549.1 205 LSRQQAFRLVSDDLACRVDrHALPSLLETVRQEGnEIMIFVGNRGCVQIFTGALEKLAPMRGWLNIFNTTFTLHLREESLDEVWVTRKPTSDGHVTSVE 303
                 89************************************************************************************************* PP

        HemS  99 fFdaeGeaihkvfgerk...selaawralvael 128
                 +F ++G++i++++g+r+   +e+++wr++v++l
  CTQ29549.1 304 LFAKDGTQIAQLYGQRSeghPEQTQWRQQVDRL 336
                 *****************999*********9876 PP

>> ChuX_HutX  Haem utilisation ChuX/HutX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   0.4   7.7e-37   6.9e-33       1     134 []      28     152 ..      28     152 .. 0.96
   2 !   98.5   0.0   2.8e-32   2.5e-28       3     133 ..     202     331 ..     201     332 .. 0.93

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 7.7e-37
                 HHHCTS-HHHHH.HTS-TTCEEEEEGGGHHHHHHHHTTS-EEEEEEEESSEEEEEEEE....--EEEEE......EESCTSEEEEEEGGGEEEEEEEEE CS
   ChuX_HutX   1 Aaelgvseaelv.aalgedeavrldgedfeallealeelgevmalvrnegavhEkkGkyenvlpeyynl...ag.vlgeseldlhLfldhwahifavee 94 
                 Aae+g+seael+ a+lg+d avrl+  d++al++ale++ge ++++rne avhE++G++++      +l   ag vl++++ldl+Lfl++wa++f ++ 
  CTQ29549.1  28 AAEMGISEAELTaARLGHD-AVRLSD-DARALIAALERVGETKCICRNEYAVHEQVGQFTHQ-----HLsghAGlVLNPRALDLRLFLSQWASAFHLND 119
                 89***************99.******.*******************************9999.....66778999************************ PP

                 EE.TTEEEEEEEEETTSSEEEEEEEBSTSSHHHHHHHHHH CS
   ChuX_HutX  95 ptkrgesrslqffdadGeavhkvyvrdeeseeqvaafeaL 134
                 +  r   +s+qffd++G+a++kvy  ++++  ++aa+e+L
  CTQ29549.1 120 NG-R---QSIQFFDHHGDALLKVY-ATTQT--DMAAWETL 152
                 *9.8...9****************.99999..*****987 PP

  == domain 2  score: 98.5 bits;  conditional E-value: 2.8e-32
                 HCTS-HHHHHHTS-TTCEEEEEGGGHHHHHHHHTTS-E.EEEEEEESSEEEEEEEE......--EEEEE..EESCTSEEEEEEGGGEEEEEEEEEEE.T CS
   ChuX_HutX   3 elgvseaelvaalgedeavrldgedfeallealeelge.vmalvrnegavhEkkGkyenv..lpeyynlagvlgeseldlhLfldhwahifaveeptkr 98 
                 ++++s++++++ + +d a+r+d +++++lle++++ g+ +m++v+n+g+v++++G +e++  +  ++n+    +   ++lhL+ ++ ++++++++pt++
  CTQ29549.1 202 KYQLSRQQAFRLVSDDLACRVDRHALPSLLETVRQEGNeIMIFVGNRGCVQIFTGALEKLapMRGWLNI---FNT-TFTLHLREESLDEVWVTRKPTSD 296
                 789*********************************************************66666****...343.7*********************9 PP

                 TEEEEEEEEETTSSEEEEEEEBSTSSHHHHHHHHH CS
   ChuX_HutX  99 gesrslqffdadGeavhkvyvrdeeseeqvaafea 133
                 g+++s+++f++dG++++++y++++e++++++++++
  CTQ29549.1 297 GHVTSVELFAKDGTQIAQLYGQRSEGHPEQTQWRQ 331
                 9********************88888899999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2576.74
//
Query:       CTQ29550.1  [L=272]
Description: Hemin-binding periplasmic protein HmuT [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-26   92.7   0.1    2.9e-26   92.5   0.1    1.0  1  Peripla_BP_2  Periplasmic binding protein
  ------ inclusion threshold ------
      0.084   12.5   0.0       0.16   11.6   0.0    1.4  1  DUF4131       Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.1   3.2e-30   2.9e-26       2     236 ..      23     247 ..      22     249 .. 0.94

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 3.2e-30
                   EE-SHHHHHHHHHTT-GGGEEEB-GGG--GGGGGGT..TS-BSBESSSB-HHHHHHH--SEEEE-GGG...GGGHHHHHHHS-EEE----TTSHHHH CS
  Peripla_BP_2   2 aslspsvteillalGatdkvvgvdtttsdpldadkleeaivevgadgeidvEklaalkPDlvilskglgltdedeellksgiptvivessntgeslk 98 
                   ++l+ +vtei++al a++++v++d t+s+p +a+    + ++vg+ ++++ E ++al+P lv++s++ ++     + ++sg+++v v+ ++ ++ + 
    CTQ29550.1  23 VTLGGDVTEIVYALHAEESLVARDSTSSWPPAAQ----KLPDVGYLRQLNAEGILALRPQLVLASAQAQPSLVLHKVQASGVKVVNVPGGESLSAID 115
                   89*******************************9....789***************************8899999********************** PP

                   HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT.-EEEEEEEETTE..EEEE-TTSTTTHHHHTS--EESTTT--STT-EEE-HHHHHHH--S CS
  Peripla_BP_2  99 eqiralgellgledeaeklvaeidsklaaaksaidsekpkpvlvfggadeggyvvagsnsyigdlldalgieniaaeskkseyeeisaEqilasdpd 195
                   + + +++e+lg+++++++l +++++ +aa+ +      +k vl   ++ +  ++vag  +     ++a+g++n+ +    ++y   s E ++as++d
    CTQ29550.1 116 NKVAVIAEALGKTAAGDALRQQLQQQIAAIPTQP---VAKRVLFILSHGGMNTLVAGQHTAADGAIRAAGLQNAMQG--FDHYRAMSQEGVAASQAD 207
                   ***************************9885433...3557777777888899*********************999..7***************** PP

                   EEEEEEHHHHT-S--HHHHT-SHHHHTSHHHHTT-EEEE-H CS
  Peripla_BP_2 196 vifvsgraeadnktgleflkenpllaelpAvkngrVyalds 236
                   ++++s     +   g ++l + p+la++pA ++++  ++d+
    CTQ29550.1 208 LVVISAD-GLKGMGGEAGLWKLPGLAQTPAGRHKQLLTIDD 247
                   *******.***************************999875 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.8e-05      0.16      74     158 ..     120     204 ..     103     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.8e-05
     DUF4131  74 vvaslpeltgsgtrfvlevervlsagktkpvsgrvlvtvpkspaeglrpGdrlrltgrlkrprpatNpggFDyraYLarqgIfat 158
                 v+a+   +t+ g+ +  + ++ + a  t+pv  rvl  +  +   +l  G+  +  g ++     +  +gFD  + ++++g+ a+
  CTQ29550.1 120 VIAEALGKTAAGDALRQQLQQQIAAIPTQPVAKRVLFILSHGGMNTLVAGQHTAADGAIRAAGLQNAMQGFDHYRAMSQEGVAAS 204
                 77888888888885555555669************************************998888888*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2176.15
//
Query:       CTQ29551.1  [L=331]
Description: vitamin B12 transporter subunit: membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-91  306.3  38.6    2.3e-91  306.0  38.6    1.0  1  FecCD     FecCD transport family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.0  38.6   1.3e-95   2.3e-91       4     312 .]      13     324 ..      10     324 .. 0.93

  Alignments for each domain:
  == domain 1  score: 306.0 bits;  conditional E-value: 1.3e-95
       FecCD   4 lllllslllgavkispsevfea.llgkadsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlallll...lgsl 98 
                  lll+sl+l a+++ + ++  + ll ++d++ + i l +rlprvl+allvGaaLa++G+++Q+++rNpLadP++lGissgaal+++  l+l    +g +
  CTQ29551.1  13 TLLLVSLTLFATTLGAMRLPLVnLLPSGDDMLRHIWLTIRLPRVLLALLVGAALALSGCVMQGLFRNPLADPGLLGISSGAALAVASWLVLPfsaAGLI 111
                 555555555555555544433203334699999*****************************************************9999988988899 PP

       FecCD  99 slfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvlllllllllllla 197
                  l+  +laaf+g+l++++++++l+ + ++ s  +l+L+Gia++al++al+ +l  l+n+++l+++  w +Gsl++a+w ++l+++ l++ ++l+++++a
  CTQ29551.1 112 ALYMPMLAAFIGSLAVMVVIFILS-RAEEGSLSRLLLVGIAINALCGALVGVLSWLSNDAQLRQLSLWGMGSLGQAEWPTLLVAATLIIPAALAVWWMA 209
                 99999*******************.99999********************************************************************* PP

       FecCD 198 rkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpvgi 296
                 ++l+ll+lgde+A+ lGvnv+ ++ +lll++a+l+a+ava++G+igF+GL+vPh++rl++g+dhr l+p s l+Ga+llllad+lar++++p+e+pvg+
  CTQ29551.1 210 SRLNLLQLGDEEAHYLGVNVQVLQRWLLLCSAVLVAAAVAISGVIGFIGLVVPHLMRLWLGPDHRGLIPGSLLAGAILLLLADTLARTVAAPAEIPVGL 308
                 *************************************************************************************************** PP

       FecCD 297 vtaliGapffiylllr 312
                 +t+l+Gap f++l++r
  CTQ29551.1 309 LTSLLGAPWFLWLVFR 324
                 *************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.35
# Mc/sec: 2798.93
//
Query:       CTQ29552.1  [L=259]
Description: Hemin import ATP-binding protein HmuV [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-24   86.1   0.0    4.6e-24   85.5   0.0    1.3  1  ABC_tran         ABC transporter
    1.4e-12   48.0   0.0    1.4e-05   25.1   0.0    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    1.6e-07   31.0   0.0      0.005   16.3   0.0    2.1  2  SMC_N            RecF/RecN/SMC N terminal domain
      3e-05   23.7   0.1    5.8e-05   22.8   0.1    1.4  1  AAA_29           P-loop containing region of AAA domain
    3.4e-05   24.3   0.6    6.8e-05   23.3   0.6    1.5  1  AAA_16           AAA ATPase domain
    9.8e-05   22.9   0.0    0.00013   22.5   0.0    1.1  1  AAA_23           AAA domain
    0.00038   20.4   0.0    0.00074   19.5   0.0    1.5  1  RsgA_GTPase      RsgA GTPase
     0.0034   16.8   0.1      0.013   14.9   0.1    1.9  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0044   17.3   0.0      0.021   15.1   0.0    1.9  2  AAA_22           AAA domain
     0.0053   16.5   0.0     0.0087   15.8   0.0    1.3  1  AAA_15           AAA ATPase domain
  ------ inclusion threshold ------
      0.012   15.9   0.0       0.02   15.1   0.0    1.4  1  SbcCD_C          Putative exonuclease SbcCD, C subunit
      0.022   14.5   0.1      0.035   13.8   0.1    1.4  1  AAA_30           AAA domain
      0.042   14.1   0.0       0.14   12.4   0.0    1.8  2  AAA_28           AAA domain
      0.045   13.3   1.1        0.2   11.2   0.2    2.2  2  AAA_25           AAA domain
      0.056   13.5   0.0      0.098   12.7   0.0    1.4  1  MMR_HSR1         50S ribosome-binding GTPase
      0.057   13.6   0.4       0.37   11.0   0.1    2.2  2  AAA_33           AAA domain
      0.073   12.8   0.0        1.4    8.6   0.0    2.1  2  Sigma54_activat  Sigma-54 interaction domain
       0.12   12.2   0.0       0.17   11.7   0.0    1.2  1  MukB             MukB N-terminal
       0.21   11.2   0.0       0.37   10.3   0.0    1.3  1  AAA_27           AAA domain
       0.23   11.1   0.0       0.61    9.8   0.0    1.6  2  AAA_24           AAA domain
       0.24   11.4   0.6        4.1    7.4   0.0    2.6  2  BCA_ABC_TP_C     Branched-chain amino acid ATP-binding casset
       0.36    8.3   0.3       0.48    7.9   0.3    1.0  1  DUF3584          Protein of unknown function (DUF3584)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.0   5.6e-27   4.6e-24       2     136 ..      21     168 ..      20     169 .. 0.90

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 5.6e-27
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...........esdeeiekal 89 
                 +nvs+ l+ ge++a++G+nGaGKStLl+ll+g l+p++G+ +l gk+l+  + e l+++ +v+ q + l+ + tv++            ++ + +++++
  CTQ29552.1  21 DNVSVALRGGEMTALIGPNGAGKSTLLRLLTGYLTPDSGTRHLAGKPLEAWSPEALSRRRAVMLQRTALQADWTVETViamgrspwgatADPAVLAAVM 119
                 8*************************************************************************9999*99999988766667799999 PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHH......TSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallk......kpkllllDEpt 136
                 +  g ++l+ ++       LSgG++qrv+lar+l++       +  l+lDEpt
  CTQ29552.1 120 AVTGCDGLAGRRY----PGLSGGEQQRVQLARCLAQlwrdgaPQGWLFLDEPT 168
                 9999999999999....****************99733333234578889988 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.7e-08   1.4e-05       1      23 [.      32      54 ..      32      82 .. 0.82
   2 !   21.0   0.0   2.9e-07   0.00024     244     292 ..     145     192 ..     133     196 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.7e-08
      AAA_21  1 lnvliGpNgsGKSnLLdaldlla 23
                +++liGpNg+GKS+LL++l +  
  CTQ29552.1 32 MTALIGPNGAGKSTLLRLLTGYL 54
                699****************7764 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 2.9e-07
      AAA_21 244 llalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv 292
                 l++ l+ l+r+  + ++l++DEp + L+   + +ll+llk+l++ g+Q+
  CTQ29552.1 145 LARCLAQLWRDGAPQGWLFLDEPTSALDLYYQQHLLRLLKRLTA-GGQL 192
                 567788999999999*****************************.9997 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   6.1e-05      0.05      25      42 ..      31      48 ..      17      69 .. 0.83
   2 !   16.3   0.0   6.2e-06     0.005     137     195 ..     135     195 ..      78     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.1e-05
                SEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlld 42
                ++ta++GpNG+GKs ll 
  CTQ29552.1 31 EMTALIGPNGAGKSTLLR 48
                699***********9986 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 6.2e-06
                 S-HHHHHHHHHHHHHH..HHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE CS
                 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 137 LSgGektLvalaLlfA..iqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivi 195
                 LSgGe++ v la  +A   +   p+   +lDe  +aLD  + + + +llk+ +   Q+ v 
  CTQ29552.1 135 LSGGEQQRVQLARCLAqlWRDGAPQGWLFLDEPTSALDLYYQQHLLRLLKRLTAGGQLHVC 195
                 9***************666677788899***********************9999998665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   7.1e-08   5.8e-05      15      49 ..      23      57 ..      13      62 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 7.1e-08
      AAA_29 15 htieidlkg..atlltGpsGsGKSTllDAiqalLvpa 49
                 ++ ++  g  +t l+Gp+G+GKSTll  ++  L+p+
  CTQ29552.1 23 VSVALR--GgeMTALIGPNGAGKSTLLRLLTGYLTPD 57
                455555..336***************97776666666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.6   8.3e-08   6.8e-05      14     145 ..      21     202 ..      14     225 .. 0.59

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 8.3e-08
      AAA_16  14 salervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala..... 106
                 + ++ + +g+ e++ l+G+ G GKs+l+r l  +l+ d         +++ ++ p+ a   +al+r++ +        +a++++w  +   a++     
  CTQ29552.1  21 DNVSVALRGG-EMTALIGPNGAGKSTLLRLLTGYLTPD-------SGTRHLAGKPLEAwSPEALSRRRAVMLQR----TALQADWTVETVIAMGrspwg 107
                 4455455565.8********************888888.......23333335566554556664433333333....347778888666666688888 PP

      AAA_16 107 ...........................................................avpelagaeasrllellkrllallsrderplvlvlDdlq 145
                                                                            ++++l+    ++ll+llkrl a  +     + +vl dl 
  CTQ29552.1 108 atadpavlaavmavtgcdglagrrypglsggeqqrvqlarclaqlwrdgapqgwlfldePTSALDLYYQQHLLRLLKRLTAGGQ---LHVCVVLHDLN 202
                 888777788888888888887776655555555555555544444444444444433333333333322333333333332222...22555555555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.6e-07   0.00013      14      46 ..      24      57 ..      11      72 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.6e-07
      AAA_23 14 eidF.skgltlItGpNGaGKTTildAiklaLyge 46
                ++ + +  +t+++GpNGaGK+T+l+ ++  L+ +
  CTQ29552.1 24 SVALrGGEMTALIGPNGAGKSTLLRLLTGYLTPD 57
                555555679*****************99888765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   9.1e-07   0.00074      85     122 ..      15      53 ..       3      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 9.1e-07
                  TTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  85 ktkegleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                   +++ +++++ +l++ ++++l+G+ G+GKStL+  l++ 
   CTQ29552.1  15 GKRQIIDNVSVALRGgEMTALIGPNGAGKSTLLRLLTGY 53 
                  5567889999999999******************99875 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.6e-05     0.013       7      53 ..      15      61 ..      10      88 .. 0.86
   2 ?   -1.8   0.0       2.1   1.7e+03     105     115 ..     157     167 ..     156     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.6e-05
  Mg_chelatase  7 GqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseee 53
                  G+++    + +a  Gg    l+Gp G+GK+ l + l++ l+p s + 
    CTQ29552.1 15 GKRQIIDNVSVALRGGEMTALIGPNGAGKSTLLRLLTGYLTPDSGTR 61
                  6777788899***************************9998876555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.1
  Mg_chelatase 105 ahnGvLfLDEl 115
                   a +G LfLDE 
    CTQ29552.1 157 APQGWLFLDEP 167
                   6689*****95 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.6e-05     0.021       4      27 ..      29      52 ..      26      97 .. 0.88
   2 ?   -0.3   0.0       1.4   1.2e+03      73     124 ..     140     193 ..     113     204 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlle 27
                +  +++++G+ G+GK+tllr l+ 
  CTQ29552.1 29 GGEMTALIGPNGAGKSTLLRLLTG 52
                56799***************9975 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.4
      AAA_22  73 lsseellealeqalraravielliiDEaqh.lr...seealeeLrsllnlsrkgvq 124
                 +++ +l + l+q +r+ a ++ l +DE    l+   ++ +l+ L++l      +++
  CTQ29552.1 140 QQRVQLARCLAQLWRDGAPQGWLFLDEPTSaLDlyyQQHLLRLLKRLTA--GGQLH 193
                 5555555666666666666677777877776666655666666676666..44444 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.1e-05    0.0087      24      43 ..      30      50 ..      17      58 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.1e-05
      AAA_15 24 e.ltvliGkNnsGKSsileal 43
                  +t liG+N++GKS++l++l
  CTQ29552.1 30 GeMTALIGPNGAGKSTLLRLL 50
                349***************998 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   2.4e-05      0.02      28      89 ..     130     184 ..     114     185 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.4e-05
     SbcCD_C  28 rssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 r++ +lSGGe+   ++la +  la+l ++        + +fLDE  s lD  +++ ll+ll+
  CTQ29552.1 130 RRYPGLSGGEQ-QRVQLARC--LAQLWRD----GAPQGWLFLDEPTSALDLYYQQHLLRLLK 184
                 77889******.44555555..7777777....67899********************9997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   4.3e-05     0.035      14      45 ..      26      57 ..      14     118 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.3e-05
      AAA_30 14 ltsgdrvavltGpAGtGKttalkalreaweaa 45
                +  g  +++l Gp G+GK+t+l+ l+  ++ +
  CTQ29552.1 26 ALRGGEMTALIGPNGAGKSTLLRLLTGYLTPD 57
                3344469****************998877765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00017      0.14       3      25 ..      34      61 ..      32     125 .. 0.65
   2 ?   -1.0   0.0       2.3   1.9e+03      68      90 ..     154     176 ..     137     194 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00017
      AAA_28  3 vitGgestGKTtlleaLa........argyp 25
                +++G+ ++GK+tll+ L+            +
  CTQ29552.1 34 ALIGPNGAGKSTLLRLLTgyltpdsgT---R 61
                79***************9555543331...3 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.3
      AAA_28  68 aaaaankvlfcDrglldtlaYar 90 
                 ++ a++++lf+D  + +   Y++
  CTQ29552.1 154 RDGAPQGWLFLDEPTSALDLYYQ 176
                 33477888888877666666665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00025       0.2      30      51 ..      27      48 ..      16     102 .. 0.85
   2 ?    0.5   0.0      0.46   3.8e+02      78     121 ..     137     178 ..     113     194 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00025
      AAA_25 30 lpagelallaGapgtGKttlal 51
                l+ ge ++l+G+ g+GK+tl+ 
  CTQ29552.1 27 LRGGEMTALIGPNGAGKSTLLR 48
                6789***************985 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.46
      AAA_25  78 saEdsedelrrRlravgealrddarllvldlagveslpLfakdr 121
                  +E+++ +l+r l+++ ++  +++++l+ld +++  l+L+++++
  CTQ29552.1 137 GGEQQRVQLARCLAQLWRDG-APQGWLFLDEPTS-ALDLYYQQH 178
                 46899999999999977774.4566666666664.788887665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00012     0.098       3      22 ..      34      53 ..      32      70 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00012
                EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge 22
                a++G   +GKStL++ ltg 
  CTQ29552.1 34 ALIGPNGAGKSTLLRLLTGY 53
                89***************984 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00045      0.37       3      20 ..      34      51 ..      32      64 .. 0.84
   2 ?   -0.4   0.0       1.4   1.1e+03      65      89 ..      74      99 ..      62     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00045
      AAA_33  3 llvGlpGsGKstlaerll 20
                 l+G++G+GKstl++ l 
  CTQ29552.1 34 ALIGPNGAGKSTLLRLLT 51
                689**********99775 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.4
      AAA_33 65 kalsagrnvildatnlsr.rerarfl 89
                +als++r+v+l  t l++ ++ + ++
  CTQ29552.1 74 EALSRRRAVMLQRTALQAdWTVETVI 99
                68999999999999999856666555 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.21   1.7e+02      11      42 ..      19      50 ..      14      62 .. 0.77
   2 ?    8.6   0.0    0.0017       1.4      92     119 ..     157     185 ..     153     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.21
                     HHHHHHHHCTSSS-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat 11 lleqikkvaktdlsvlitGesGtGKellarai 42
                     ++++++ + +    + + G +G+GK++l r++
       CTQ29552.1 19 IIDNVSVALRGGEMTALIGPNGAGKSTLLRLL 50
                     556666666666667788********987765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0017
                      TTTSEEEEET.GGGS-HHHHHHHHHHHHH CS
  Sigma54_activat  92 adgGtlfLDe.igelplelQekLlrvlqe 119
                      a +G lfLDe  + l+l  Q++Llr+l++
       CTQ29552.1 157 APQGWLFLDEpTSALDLYYQQHLLRLLKR 185
                      779*******5568************975 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00021      0.17      28      58 ..      32      62 ..      28      83 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00021
                HHHHHS--SHHHHHHHHHHHHHHS--TTT-- CS
        MukB 28 vttlsGgnGaGksttmaafvtaliPdlsllh 58
                +t+l G nGaGkst +  +   l Pd    h
  CTQ29552.1 32 MTALIGPNGAGKSTLLRLLTGYLTPDSGTRH 62
                69***************99999***987666 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00045      0.37      26      47 ..      30      51 ..      13      54 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00045
      AAA_27 26 adlhliyGpNEAGKstalrAis 47
                 +++ ++GpN AGKst+lr ++
  CTQ29552.1 30 GEMTALIGPNGAGKSTLLRLLT 51
                5677889**********99665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00075      0.61       5      40 ..      33      65 ..      30      91 .. 0.81
   2 ?   -2.1   0.0       3.2   2.6e+03     107     130 ..     175     199 ..     174     200 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00075
      AAA_24  5 iliyGpsgiGKTtlakelgpkplfidtekGlkslda 40
                 +++Gp+g+GK+tl++ l   + ++  + G+++l +
  CTQ29552.1 33 TALIGPNGAGKSTLLRLL---TGYLTPDSGTRHLAG 65
                689************999...666666666666655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.2
      AAA_24 107 laeefrrllkklqelrk.nvifiah 130
                 +++ + rllk+l++ ++ +v ++ h
  CTQ29552.1 175 YQQHLLRLLKRLTAGGQlHVCVVLH 199
                 5678899999**9999999999988 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.36   2.9e+02      13      20 ..     110     117 ..     109     117 .. 0.90
   2 ?    7.4   0.0    0.0051       4.1       2      11 ..     219     228 ..     218     232 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.36
  BCA_ABC_TP_C  13 ndPrVieA 20 
                   +dP+V +A
    CTQ29552.1 110 ADPAVLAA 117
                   8****998 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0051
  BCA_ABC_TP_C   2 vIAeGtPaEv 11 
                   + A GtP+Ev
    CTQ29552.1 219 LVAQGTPQEV 228
                   67*******9 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3   0.00058      0.48      17      37 ..      30      50 ..      22      51 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00058
     DUF3584 17 dghtnieGtNaaGKTtLlrLi 37
                 + t + G N+aGK tLlrL+
  CTQ29552.1 30 GEMTALIGPNGAGKSTLLRLL 50
                456999**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2169.86
//
Query:       CTQ29553.1  [L=853]
Description: methyl-directed mismatch repair protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-90  299.8   0.2    1.8e-89  298.8   0.2    1.5  1  MutS_V    MutS domain V
    5.9e-44  148.9   0.0    1.6e-43  147.5   0.0    1.8  2  MutS_I    MutS domain I
    4.3e-39  134.7   1.2    9.5e-39  133.6   1.2    1.6  1  MutS_III  MutS domain III
    2.1e-34  118.7   0.0    5.1e-34  117.5   0.0    1.7  1  MutS_II   MutS domain II
    6.9e-29  100.1   0.1    1.8e-28   98.7   0.1    1.8  1  MutS_IV   MutS family domain IV
  ------ inclusion threshold ------
       0.22   11.5   0.3        0.7    9.9   0.3    1.8  1  Noelin-1  Neurogenesis glycoprotein


Domain annotation for each model (and alignments):
>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.8   0.2   6.1e-93   1.8e-89       1     188 []     610     797 ..     610     797 .. 0.99

  Alignments for each domain:
  == domain 1  score: 298.8 bits;  conditional E-value: 6.1e-93
                 EEEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHHHH CS
      MutS_V   1 llitGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGlaia 99 
                 l+itGpnm+Gksty+rq+ali+lla+iGs+vpa+k+ei+++d+iftRvga+Ddla+g+stFmvEm+Eta+il+nate+slv++DE+GRGtstydGl++a
  CTQ29553.1 610 LIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEHSLVLMDEIGRGTSTYDGLSLA 708
                 59************************************************************************************************* PP

                 HHHHHHHHHTT--EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEES--SS--HHHHHHHTT--HHHHHHHHHHHHHTT CS
      MutS_V 100 lavaeyllekikaktlfatHyheltklaekleevknlhlavkeeeedivflykvkegaaeksyGikvaklaglPesvverArevlkele 188
                 +a+ae l++kika tlfatHy+elt+l ek+e v+n+hl++ e+ ++i+f+++v++gaa+ksyG++va+lag+P++v++rAr++l+ele
  CTQ29553.1 709 WACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELE 797
                 *************************************************************************************9996 PP

>> MutS_I  MutS domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   0.0   5.4e-47   1.6e-43       1     112 [.      11     122 ..      11     123 .. 0.99
   2 ?   -3.2   0.0       3.3     1e+04      73      93 ..     749     769 ..     728     789 .. 0.67

  Alignments for each domain:
  == domain 1  score: 147.5 bits;  conditional E-value: 5.4e-47
                 HHHHHHHHCCCHH-TTCEEEEEETTEEEEECHHHHHHHHHCSSSSTT.ESSSSC.EEEEEEEHHHHHHHHHHHHHTT-EEEEEEE-S-HHHHS.S--EE CS
      MutS_I   1 tplmkqylelkkkykdavlffrvGdfYelfgeDAviaareleitltkrkkssekeipmagvPehalekylrkLvekgykVavveqtetpaekkgvvkre 99 
                 tp+m+qyl+lk++++d++lf+r+GdfYelf++DA+ a+++l+i+ltkr+ s+++ ipmag+P+ha+e+yl+kLv++g +Va++eq  +pa++kg v+r+
  CTQ29553.1  11 TPMMQQYLKLKAQHPDILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATTKGPVERK 109
                 8************************************************999999******************************************** PP

                 EEEEEBTTC-TTS CS
      MutS_I 100 vvrviTpGtltde 112
                 vvr++TpGt++de
  CTQ29553.1 110 VVRIVTPGTISDE 122
                 **********987 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.3
                 HHHTT-EEEEEEE-S-HHHHS CS
      MutS_I  73 LvekgykVavveqtetpaekk 93 
                  +e+g ++a++  +++ a++k
  CTQ29553.1 749 ALEHGDTIAFMHSVQDGAASK 769
                 467778888877777766663 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   1.2   3.2e-42   9.5e-39       1     191 []     272     559 ..     272     559 .. 0.96

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 3.2e-42
                 HHHHHTTSSS-TTS.SSSS-HHHHH---SSHHHHHHHHHHHH--BS-HHHHHHHHHHHHHT..TT.HHHHHHHHTT---HHHHHHHHHTT---HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III   1 aTlrnLeilenlrggskegsLlgvldrTvTamGaRlLrewllqPltdleeInaRldaVeeleneelreelrellrrlpDleRllsrislgkakardlka 99 
                 aT+rnLei++nl+g +++ +L +vld+TvT+mG+R+L++wl+ P +d +++ +R++ +  l  +e   el+  lr+++DleR+l+r++l++a++rdl++
  CTQ29553.1 272 ATRRNLEITQNLAG-GTDNTLASVLDCTVTPMGSRMLKRWLHMPVRDTAVLVERQQTIGAL--QERYTELQPVLRQVGDLERILARLALRTARPRDLAR 367
                 69*********998.5577*****************************************9..5557899999************************** PP

                 HHHHHHHHHTTTTT---SSTHHHHH........HHHHHHHHHHB-SS--SSGGGS--B-T....................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxx....................................... RF
    MutS_III 100 llealkaleelvallekeklaesee........eslaelleeaideeplalekegedlra....................................... 151
                 +++al++l+ l++ll + ++++ ++        ++l+elle+a+++ p+ l ++g++++                                        
  CTQ29553.1 368 MRHALQQLPLLRELLADVDSQPVQKlrekmgefTELRELLERAVIDAPPVLVRDGGVIAPgyseeldewraladgatdyldkleirererlgldtlkvg 466
                 ***************9998877766999998888888************************************************************** PP

                 .....................................................HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH CS
                 .....................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 152 .....................................................iealeqelfqelleeveealerlrrlaealaeLDvllSlA 191
                                                                      + ale++l++el++ +  +l++l++ a+alaeLDvl+ lA
  CTQ29553.1 467 ynavhgyyiqisrgqshlapihyvrrqtlknaeryiipelkeyedkvltskgkALALEKQLYDELFDLLLPHLADLQTSASALAELDVLVNLA 559
                 *****************************************************99***********************************998 PP

>> MutS_II  MutS domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   0.0   1.7e-37   5.1e-34       1     137 []     131     256 ..     131     256 .. 0.98

  Alignments for each domain:
  == domain 1  score: 117.5 bits;  conditional E-value: 1.7e-37
                 -EEEEEEEETTTSEEEEEEEETTTTEEEEEEEEE-HHHHHHHHHH-ESEEEEESS-SCCCHHHHHHCHCTTT-EEEEESCCCCSHCCHHHHCHHHB--S CS
     MutS_II   1 nylaAisekregrrvGlafiDlstgefvvsefedfeeleaeLsrlsPkElllpedlsestaeeessklrelrsrvgvretvefesekaserleedfsve 99 
                 n+laAi++  +++ +G+a +D+s+g+f++se +d+e ++aeL+r +P+Ell+ ed+ es       +l e r+++++r+ +efe+++a+++l+++f+++
  CTQ29553.1 131 NLLAAIWQ--DSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYAEDFAES-------SLIEGRRGLRRRPLWEFEIDTARQQLNLQFGTR 220
                 7899***9..**********************************************887.......79******************************* PP

                 TTTTTTTGGG-HHHHHHHHHHHHHCCCCCSCCCCT-CC CS
     MutS_II 100 dldgfglekekklalaAlgalisYleetqkekelshle 137
                 dl gfg+ ++ +  l+A+g+l++Y+++tq++ +l+h++
  CTQ29553.1 221 DLVGFGV-ENAPRGLCAAGCLLQYVKDTQRT-SLPHIR 256
                 *******.9**********************.****96 PP

>> MutS_IV  MutS family domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.1   5.9e-32   1.8e-28       1      90 [.     428     517 ..     428     519 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 5.9e-32
                 TTSHHHHHHHHHHHHHHHHHHHHHCCCCCCCT-TTBEECCCSSSEEEEEE-TCCCTTT--SEEEEEECTCEEEEECCCHHHHHHHHHHHH CS
     MutS_IV   1 gfdeeLdelrdrleelekeleeleekereklgikslkveynkvlGyylevtrseakkvpkefirlqtlknseryttaelkkleaelleae 90 
                 g++eeLde+r++ ++++++l++le +ere+lg+++lkv+yn+v+Gyy++++r +++ +p +++r+qtlkn+ery+ +elk++e+++l+ +
  CTQ29553.1 428 GYSEELDEWRALADGATDYLDKLEIRERERLGLDTLKVGYNAVHGYYIQISRGQSHLAPIHYVRRQTLKNAERYIIPELKEYEDKVLTSK 517
                 799**********************************************************************************99876 PP

>> Noelin-1  Neurogenesis glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00023       0.7      27      93 ..     324     392 ..     317     399 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00023
    Noelin-1  27 PaqdvCsrDarsrqlrqllekvqnlsqsievldlRts..rdlqyvrktetllktlesklkvveedrkel 93 
                  +q++ +   r+++l+ +l +v +l + +  l+lRt+  rdl  +r++ ++l  l++ l +v++++ ++
  CTQ29553.1 324 RQQTIGALQERYTELQPVLRQVGDLERILARLALRTArpRDLARMRHALQQLPLLRELLADVDSQPVQK 392
                 5788888899**************************844599999999999999999999988876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.38
# Mc/sec: 6726.60
//
Query:       CTQ29554.1  [L=50]
Description: toxic polypeptide, small [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-20   71.5   2.3      3e-20   71.4   2.3    1.0  1  HOK_GEF   Hok/gef family


Domain annotation for each model (and alignments):
>> HOK_GEF  Hok/gef family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   2.3   1.6e-24     3e-20       1      42 []       5      46 ..       5      46 .. 0.99

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 1.6e-24
     HOK_GEF  1 yalvaliviCiTvLlftllvrkdLCElrirsGntEvaAflac 42
                yalva+iv+CiTvL ftllv+++LCEl+i+++n+E++A+la+
  CTQ29554.1  5 YALVAIIVLCITVLGFTLLVHSSLCELSIKERNIEFKAVLAY 46
                89***************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       875  (0.0488036); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 399.60
//
Query:       CTQ29555.1  [L=78]
Description: Phenolic acid decarboxylase subunit D [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0041   17.1   0.5     0.0067   16.4   0.5    1.4  1  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
  ------ inclusion threshold ------
       0.16   12.8   0.0       0.19   12.6   0.0    1.2  1  DUF1062         Protein of unknown function (DUF1062)
       0.63   10.0   4.4        2.2    8.3   0.3    2.2  2  PhnA_Zn_Ribbon  PhnA Zinc-Ribbon


Domain annotation for each model (and alignments):
>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.5   1.1e-06    0.0067      20      45 ..       2      33 ..       1      34 [. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-06
  Zn_Tnp_IS1595 20 vCPhCgsrkayrikt......rglfqCkeCrk 45
                   +CP+C+ +k+  ++t        ++qC++C +
     CTQ29555.1  2 ICPRCADEKIEVMATspvkgvWTVYQCQHCLY 33
                   6*******777777777999999*******76 PP

>> DUF1062  Protein of unknown function (DUF1062)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.1e-05      0.19      10      26 ..      22      38 ..      15      65 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.1e-05
     DUF1062 10 vWliykCekCdstwnlt 26
                vW +y+C++C + w+ t
  CTQ29555.1 22 VWTVYQCQHCLYNWRDT 38
                9**********999866 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.3   0.00037       2.2      20      28 ..       1       9 [.       1       9 [. 0.92
   2 ?    3.4   0.5     0.012        73      19      29 ..      25      35 ..      23      36 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00037
  PhnA_Zn_Ribbon 20 lvCpeCahE 28
                    ++Cp Ca E
      CTQ29555.1  1 MICPRCADE 9 
                    9*****987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.012
  PhnA_Zn_Ribbon 19 llvCpeCahEw 29
                    ++ C +C + w
      CTQ29555.1 25 VYQCQHCLYNW 35
                    778****9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 599.25
//
Query:       CTQ29556.1  [L=475]
Description: Protein VdcC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-105  353.4   0.0   1.7e-105  353.2   0.0    1.0  1  UbiD      3-octaprenyl-4-hydroxybenzoate carboxy-lyase


Domain annotation for each model (and alignments):
>> UbiD  3-octaprenyl-4-hydroxybenzoate carboxy-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.2   0.0  9.7e-110  1.7e-105       1     405 [.      10     416 ..      10     417 .. 0.93

  Alignments for each domain:
  == domain 1  score: 353.2 bits;  conditional E-value: 9.7e-110
                 HHHCCCTTSEEEEESEB-TBTHHHHHHHHH..HHHT--EEEEEEBTTB.TT-EEEE-TTS-HCHHHHHHTS.......-GHHHHHHHHHHHHHS..--- CS
        UbiD   1 lealekagelvrikeevdpelEiaeiarrv..leeggpallFenvkgkgskfpvltnlfgtrervalalgl.......ssleeileklaellepkppip 90 
                 l+al+ +g+l +i+eev+ e ++a+ a+ +     g+pal F+n++g  ++++v +n +g++++ a+ lgl       ++++e+++++ +      p+ 
  CTQ29556.1  10 LQALDDQGQLLKISEEVNAEPDLAAAANATgrIGDGAPALWFDNIRGF-NDARVTMNTIGSWQNHAISLGLppntpvkKQIDEFIRRWDNF-----PVT 102
                 689***************************99889**********866.79********************88744433334444444333.....477 PP

                 -EE--GCG-GGGSEEECCCCC--HHH.S---BSSTTSSS-EEECEEEEEE-TT...T.T-EEEEEEEEEEEETTEEEE--TTTHCHHHHHHHHHHCCT- CS
        UbiD  91 pkvvesekapcqeevvlegddvdLsk.LPvltlwpgDgGpyitlglvitrdpe...t.gkrnlgiyRmqvldknklglhwqihkggaehlrkakkkgge 184
                 p++   ++++  e++ ++gdd++L + LP+++l++gDgG y+  ++v++rdp    + gk+n+giyRm v++k+klgl+ ++ +++a hl+ka+++g e
  CTQ29556.1 103 PERR--ANPAWAENT-VDGDDINLFDiLPLFRLNDGDGGFYLDKACVVSRDPLdkdNfGKQNVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERG-E 197
                 7766..445666566.68**********************************876548***************************************.9 PP

                 -EEEEEEES--HHHHHHCTS--TTT-TCHHHHHHHHTS--EEEE-SSSSSEEETT-SEEEEEEEECCEEEECTTTC-TTSCEEC--CCEEEEEEEEEEE CS
        UbiD 185 plpvavaiGvdPaltlaAvaplPeglsElefaGalrgepvelvkcetvdlevpadAEivleGeidpgetapEGPfgdhtGyysevrdefpvfkVtaith 283
                 +lp+a+++G dP++tl++++pl ++ sE+e+aGalr++p ++++++ ++ +vp  +E++leG+i+ ++++ EGPfg++tG+ys+ r+ + v++++++ +
  CTQ29556.1 198 DLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIATAPLTGFDVPWGSEVILEGVIEGRKREIEGPFGEFTGHYSGGRN-MTVVRIDKVSY 295
                 **********************************************************************************99977.9********** PP

                 -TT-EEEE-SSSCCS.HHHHCHHHHHHHHHHHHHHCCSTTEEEEEE-GGGTTTCEEEEECHHHTCCHHHHHHHHHHCCTTGGC-SEEEEEEETTS-TTS CS
        UbiD 284 Rkdpiypttvvgkpp.eedallgkalealflpllkkqvpevkdvhlpeeggfhllavvsikkrypghakkvmealwalkqqlsltKlvivvDedvdvrd 381
                 R +pi+ +++ g+p+ e d+l+g a+   ++++lk+++pev++v+++   g   la++s+kkry g a+ v+  ++++ ++l + K+vi+vDedvd+++
  CTQ29556.1 296 RSKPIFESLYLGMPWtEIDYLMGPATCVPLYQQLKAEFPEVQAVNAMYTHGL--LAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFN 392
                 ***************999*****************************99664..7***********************9******************** PP

                 HHHHHHHHHHC--CCCCEEEECCC CS
        UbiD 382 lkevlwaiatrvdpdrDlviiegt 405
                 l++v+wa++ +v+p+ Dlv ++++
  CTQ29556.1 393 LPQVMWALSSKVNPAGDLVQLPNM 416
                 *******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3707.37
//
Query:       CTQ29557.1  [L=197]
Description: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-24   85.6   0.1    3.3e-24   85.4   0.1    1.1  1  Flavoprotein  Flavoprotein


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.1   1.9e-28   3.3e-24       1     125 [.       1     164 [.       1     196 [. 0.84

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 1.9e-28
                   EEEEEEE-SSCGGGCHHHHHHHHHH.TTEEEEEEESCHHHHCCHHG.GS..............TCSSHHHHHHCT.........TESEEEEEEEEHH CS
  Flavoprotein   1 kkillgiTGsvaaikalellekLkk.egievqvvltkaAkkfiske.klklaa..........redpilhielrr.........wadllviaPasan 76 
                   +k+++g+TG+ +a  ++ ll++L++  ++e+++v++k Ak +i+ e + +  +          + d        +         ++d+++++P+s++
    CTQ29557.1   1 MKLIIGMTGATGAPLGVALLQALRDmPEVETHLVMSKWAKTTIELEtPWTAREvaaladfshsPAD--------QaatissgsfRTDGMIVIPCSMK 89 
                   799**********************99*****************8853333335555555555444........1444555556************* PP

                   HHHHHHTT--SSHH..............................HHHHHTHCCTTEEEEE.--HHCCTCSTCHHHHHHH CS
  Flavoprotein  77 tlakianGiadnll..............................tlilratakkpiliaPamnpamyenpqtlknlekl 125
                   tla i +G+a+ l+                              +l l   +++++ ++P ++pa+y++p+t++++ ++
    CTQ29557.1  90 TLAGIRAGYAEGLVgraadvvlkegrklvlvpremplstihlenMLAL---SRMGVAMVP-PMPAYYNHPETVDDITNH 164
                   ************************************999997666555...99*******.***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1506.32
//
Query:       CTQ29558.1  [L=135]
Description: Transcriptional regulator HosA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-14   53.4   0.4    2.2e-13   49.9   0.0    2.2  2  MarR             MarR family
    3.8e-11   43.3   0.1    5.6e-11   42.8   0.1    1.3  1  HTH_27           Winged helix DNA-binding domain
    2.1e-08   33.9   0.2    3.7e-08   33.1   0.2    1.4  1  MarR_2           MarR family
    0.00056   19.8   0.0    0.00086   19.2   0.0    1.4  1  PadR             Transcriptional regulator PadR-like family
  ------ inclusion threshold ------
      0.013   13.9   0.0      0.015   13.7   0.0    1.1  1  DUF505           Protein of unknown function (DUF505)
      0.036   13.9   0.0      0.077   12.9   0.0    1.5  1  HxlR             HxlR-like helix-turn-helix
       0.08   13.3   0.1       0.14   12.5   0.1    1.6  1  TetR_C_25        Tetracyclin repressor-like, C-terminal domai
       0.11   12.7   0.0       0.21   11.8   0.0    1.4  1  Fe_dep_repress   Iron dependent repressor, N-terminal DNA bin
       0.12   12.7   0.0       0.19   12.1   0.0    1.6  1  Penicillinase_R  Penicillinase repressor


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.16   3.2e+02       4      18 ..       6      20 ..       3      24 .. 0.80
   2 !   49.9   0.0   1.1e-16   2.2e-13       1      57 [.      29      85 ..      29      86 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.16
                HHHHHHHHHHHSTTE CS
        MarR  4 tqfviLrilyeqgpl 18
                  f++Lr+l +q  +
  CTQ29558.1  6 EAFHLLRQLFQQHTA 20
                579******999765 PP

  == domain 2  score: 49.9 bits;  conditional E-value: 1.1e-16
                --HHHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTT CS
        MarR  1 ltltqfviLrilyeqgplsvseLakklgvskstvtrvldrLekkGlieRskspeDrR 57
                lt +q+ ++r+++e++++ +  L ++   +k+t+ ++l r+e +Gl++R+++p D+R
  CTQ29558.1 29 LTKPQYAVMRSVAEHPGIEQVALIEAAVSTKATLAEMLSRMEARGLVRREHDPADKR 85
                899****************************************************** PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.1   2.8e-14   5.6e-11       1      68 []      29      95 ..      29      95 .. 0.94

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 2.8e-14
      HTH_27  1 ltrqqalvLhlirhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68
                lt +q +v+++++ ++ + ++ +l+++   ++++ +++l++++++GLv r++d+ad+r+++v lTd+G
  CTQ29558.1 29 LTKPQYAVMRSVA-EHPGIEQVALIEAAVSTKATLAEMLSRMEARGLVRREHDPADKRRRFVYLTDEG 95
                799**********.5555555**********************************************9 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.2   1.9e-11   3.7e-08       2      62 .]      28      86 ..      27      86 .. 0.97

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.9e-11
                T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2  2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62
                +lt  q+ v+  ++ +pg  + + +l ++   +k+++  +l r++a+GLv+r+ +p+DkR+
  CTQ29558.1 28 DLTKPQYAVMRSVAEHPG--IEQVALIEAAVSTKATLAEMLSRMEARGLVRREHDPADKRR 86
                68899*************..****************************************7 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   4.3e-07   0.00086      31      74 ..      59     100 ..      30     101 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4.3e-07
                 HHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHH CS
        PadR  31 eGslYpaLkrLekeglveseweesgegpprkyYrlTdaGrrela 74 
                 +++l  +L+r+e+ glv +e +++  +++r++  lTd+G++ l+
  CTQ29558.1  59 KATLAEMLSRMEARGLVRREHDPA--DKRRRFVYLTDEGEALLN 100
                 889999**************9995..555555559****98775 PP

>> DUF505  Protein of unknown function (DUF505)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   7.5e-06     0.015     360     406 ..      56     104 ..      26     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.5e-06
      DUF505 360 yednfdlreaLysLesfeLiesev..eekgkevyvlTeyGekvledqek 406
                  + + +l e L ++e+ +L+++e    +k ++  +lT++Ge +l++   
  CTQ29558.1  56 VSTKATLAEMLSRMEARGLVRREHdpADKRRRFVYLTDEGEALLNRSIP 104
                 55678999***************966567788889*********97655 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.9e-05     0.077      32      72 ..      58      98 ..      42     103 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.9e-05
                -HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGGG CS
        HxlR 32 sqkmLaqrLreLeqdglierevypevPpkveYsltekGrsl 72
                ++ +La+ L ++e+ gl+ re  p    +    lt++G++l
  CTQ29558.1 58 TKATLAEMLSRMEARGLVRREHDPADKRRRFVYLTDEGEAL 98
                6779**********************9999999******98 PP

>> TetR_C_25  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   7.1e-05      0.14      33      75 ..      63     107 ..      34     135 .] 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.1e-05
   TetR_C_25  33 eayleegvaaGtirpsrdpk.arArylalsslGalllelqlhe.e 75 
                  ++l++ +a G++r  +dp+ +r r++ l+  G  ll+ ++ + +
  CTQ29558.1  63 AEMLSRMEARGLVRREHDPAdKRRRFVYLTDEGEALLNRSIPQgN 107
                 5789999***********9736899************99998832 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00011      0.21      36      57 ..      59      80 ..      53      82 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
                    HHHHHHHHHHHHHTTSEEEETT CS
  Fe_dep_repress 36 pssVsemlkkLekdGyveyeky 57
                    +++  eml+++e  G+v  e++
      CTQ29558.1 59 KATLAEMLSRMEARGLVRREHD 80
                    7999*************98876 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.4e-05      0.19       3      62 ..      31      90 ..      29     131 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.4e-05
                     -S-SHHHHHHHHHS-EEHHHHHHT--GGG---HHHHHHHHHHHHHTTS-EEEEE....TTEEEE CS
  Penicillinase_R  3 elEaevmeilwekgeatvkevveeleeekelaysTVktllrrLvkKgllsreke....grafiY 62
                     + + +vm+ + e+  +    ++e+  ++    ++T + +l+r++++gl++re++     r+f+Y
       CTQ29558.1 31 KPQYAVMRSVAEHPGIEQVALIEAAVST----KATLAEMLSRMEARGLVRREHDpadkRRRFVY 90
                     5566788888888886555555554444....79******************975522444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1031.94
//
Query:       CTQ29559.1  [L=295]
Description: putative transcriptional regulators, LysR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-44  149.8   8.4    6.5e-44  149.8   8.4    1.4  2  LysR_substrate  LysR substrate binding domain
    3.5e-17   62.1   1.8    6.9e-17   61.2   1.8    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.072   12.8   0.1       0.16   11.7   0.1    1.6  1  FeoB_C          Ferrous iron transport protein B C terminus


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.1   6.8e+03     148     163 ..      42      57 ..      38      64 .. 0.69
   2 !  149.8   8.4   1.1e-47   6.5e-44       2     207 ..      88     293 ..      87     295 .] 0.94

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1.1
                     TTS-BEEEEGGGHHCC CS
  LysR_substrate 148 aGlGiallprsavrde 163
                     + lG++ll rs+ r  
      CTQ29559.1  42 NELGVTLLLRSTRRLR 57 
                     6788888888876544 PP

  == domain 2  score: 149.8 bits;  conditional E-value: 1.1e-47
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv 96 
                     +gl+g+Lri+++p ++++++ p+la+f++r+P ++++ v+++  +++dl+ e+ +D+air+g ++ds+++a+++a+  +++vasp+  La +   
      CTQ29559.1  88 SGLSGELRITTTPEYGAQVIIPALAAFARRHPALRVRHVSSS--HHADLISER-FDVAIRLGTLADSRYRATRIASFAILPVASPAW-LASHPVQ 178
                     689***************************************..****99999.********************************8.9999777 PP

                     CGGGGCTSEEEEE.STTSTHHHHHHHHHHCT...TEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEE CS
  LysR_substrate  97 sledLadeplill.eegsglrdlledalrea...glkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylv 186
                     +l+dLa+ ++i   + +++lr++l+   + +    ++  ++++++s+ al+++++aG+G+allp+++v++ +a+ +lv   lpe+ +p + +y++
      CTQ29559.1 179 TLSDLAQAEWIIHeRLPTPLRWQLRTDHQTEvdfAIASAPRFSADSATALMSFALAGCGVALLPAWLVAKKVAQRELV-PLLPEYHFPqQGVYAL 272
                     ************93445559999998877777666666****************************************.**************** PP

                     EETTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 187 yrkgrelspavrafidflrea 207
                     y+ +++l+ +vrafidflre+
      CTQ29559.1 273 YPDSQHLPTRVRAFIDFLREK 293
                     *******************97 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   1.8   1.2e-20   6.9e-17       1      59 [.       4      62 ..       4      63 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 1.2e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l+++  f+av+++gsft AA +Lg + + vs  +++LE+elgv+L+ R++r+lrLT+aG
  CTQ29559.1  4 LQRVTMFIAVVDAGSFTLAAAALGQTKAVVSFNVRQLENELGVTLLLRSTRRLRLTDAG 62
                578899****************************************************9 PP

>> FeoB_C  Ferrous iron transport protein B C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.7e-05      0.16       1      42 [.     228     266 ..     228     272 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.7e-05
      FeoB_C   1 lfslYllgilvallvalll.kkttlkgepspfvmELPpYrlPs 42 
                 l+s  l g  vall a+l+ kk+  +     +v  LP+Y++P+
  CTQ29559.1 228 LMSFALAGCGVALLPAWLVaKKV-AQ---RELVPLLPEYHFPQ 266
                 5788999************4443.44...4555559******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2343.80
//
Query:       CTQ29560.1  [L=400]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-47  162.8  57.4    1.3e-34  119.7  33.0    2.0  2  MFS_1     Major Facilitator Superfamily
    5.8e-05   22.5  22.9    5.8e-05   22.5  22.9    1.3  1  MFS_4     Uncharacterised MFS-type transporter YbfB
    0.00026   20.0  11.8    0.00026   20.0  11.8    2.5  2  Sugar_tr  Sugar (and other) transporter
     0.0066   15.1  30.6      0.014   14.0  10.8    2.6  3  MFS_2     MFS/sugar transport protein
  ------ inclusion threshold ------
      0.032   12.6  12.0       0.41    9.0   5.3    2.1  2  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7  33.0   3.6e-38   1.3e-34       2     240 ..      12     235 ..      11     236 .. 0.88
   2 !   47.6  22.3     3e-16   1.1e-12       5     172 ..     212     383 ..     207     398 .. 0.79

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 3.6e-38
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 l+++fl  ++++i+++a+p a++++l +s+s++ ++  +y lg  v +++ ++ls+r+G++r++ll+l lf+lg+l++ + +++   l++ r lqG+g+
  CTQ29560.1  12 LFGFFLDLINMFIASIAFP-AISRALAVSVSQLAWVSNAYILGLTVVVPFSAWLSERWGAKRLFLLSLGLFSLGALAAGL-ANSLsELILWRTLQGMGG 108
                 89*****************.******************************************************555558.55555************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 g+l+p+g+al+  +f + er++  + +++   l++++ p++ggll+++++Wr+vf++  +v+ll fvl++ +l ++p + ++ +   +           
  CTQ29560.1 109 GLLIPLGQALTWPLFQPHERAKLSAAVMLVGLLAPACSPAIGGLLVEAFSWRWVFFASLPVALLTFVLAVRWLNDTPGPVRPTRFLSL----------- 196
                 ********************************************************************88888777777777766555........... PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlgl 240
                    +ll+dp l +++++ l++  +f g+ +    ylq v g+
  CTQ29560.1 197 ---SLLADPLLRFAMLIYLCVPGMFIGVNVVGMYYLQRVTGM 235
                 ...678888664455555555546666777777777777776 PP

  == domain 2  score: 47.6 bits;  conditional E-value: 3e-16
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.f.a.sslwlllvlrvlqGlgag 100
                 +++ ++ +++  + +  +l++  g++p +ig l++  +l++++a+ ++Gr  +rfG+r+++++g ll a g++lll + a s+l ll+++  l+G g++
  CTQ29560.1 212 LCVPGMFIGVNVVGMY-YLQRVTGMAPGAIGALMVPWSLASFAAITFTGRYFNRFGPRPLVVIGCLLQAMGIMLLLkIdAdSPLALLILAFTLMGGGGS 309
                 3444445555555555.9*****************************************************444443344677779999999******* PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsa....gfslGailgpllggllasslgWravfyilaivsllafvlfllll 172
                 +  +++++ +   +p ee + a +l+++    +f +G++l +ll  ++   + W++vf+ +a+++ll +++  +l 
  CTQ29560.1 310 LCSSTAQSSAFLHTPAEEMPDASALWNLnrqlSFFAGSALLALLLRVFPPVYAWQGVFISAAVITLLPLLF--CLR 383
                 ****************************5555555555555555555555555**************8663..444 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5  22.9   1.6e-08   5.8e-05      13     291 ..      26     306 ..      20     334 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.6e-08
       MFS_4  13 tpiLPallaegqlslsqagllaaaNylGY.LvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlaha 110
                     Pa+ +++ +s+sq++++  a  lG   v  + a  + + ga+Rl  l +l +  l +la +l++s++ ++l+R l G+++++ + +g +l     
  CTQ29560.1  26 SIAFPAISRALAVSVSQLAWVSNAYILGLtVVVPFSAWLSERWGAKRL-FLLSLGLFSLGALAAGLANSLSELILWRTLQGMGGGLLIPLGQALTWPLF 123
                 56689***********************83456788889999999999.677888888999999*********************************** PP

       MFS_4 111 aaarrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllva..lllp.....raalreasaaaeaakaeqkslpllalllaYgl 202
                 ++++r+++ a++     +G ++++   +++  l  + s+ W+ +a l ++ll  v+   +l+      +++r  s ++   + +   +++l++l + g+
  CTQ29560.1 124 QPHERAKLSAAVML---VGLLAPACSPAIGGLLVEAFSWRWVFFASLPVALLTFVLavRWLNdtpgpVRPTRFLSLSL--LADPLLRFAMLIYLCVPGM 217
                 **********9965...7889999888888888888888899999987665544440034443322112222222222..2345556666667777777 PP

       MFS_4 203 aGfGYiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllsllsps..p.lglivssvllGl 291
                 +    ++ + +l  +  ++ g+  +    W+l+  aai     + r  +r g r+++++ +l++a+g++l l  ++  p ++li++  l+G+
  CTQ29560.1 218 FIGVNVVGMYYLQRVTGMAPGAIGALMVPWSLASFAAI---TFTGRYFNRFGPRPLVVIGCLLQAMGIMLLLKIDAdsPlALLILAFTLMGG 306
                 76677999******999988888888889*98766666...57899999******************9988766541141445555556655 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0  11.8   7.2e-08   0.00026      10     189 ..      11     178 ..       6     186 .. 0.82
   2 ?    2.4   4.4     0.016        57      55     122 ..     247     314 ..     197     385 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 7.2e-08
                 HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGG CS
    Sugar_tr  10 llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivg 108
                 +lfg+ + +i+ f+++++   +   s++ +    s +++ ++ +++++G ++   f+ +l++r+G k  +l +  lf+ ga+  ++a+   s+  li+ 
  CTQ29560.1  11 FLFGFFLDLINMFIASIA---FPAISRALA---VSVSQLAWVSNAYILGLTVVVPFSAWLSERWGAKRLFLLSLGLFSLGALAAGLAN---SLSELILW 100
                 788888888888888888...333333332...2456888************************************************...9******* PP

                 HHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 109 RvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilll 189
                 R l G+g Gl   l   ++  +  ++ R +l       + +G l  a++ ++     +a  wr+ ++ +l  all ++l +
  CTQ29560.1 101 RTLQGMGGGLLIPLGQALTWPLFQPHERAKLSA---AVMLVGLLAPACSPAIGGLLVEAFSWRWVFFASLPVALLTFVLAV 178
                 **********99999999999999999988765...456688888888888888888888999999999999988887764 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHH CS
    Sugar_tr  55 flvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvl 122
                  ++ +++   f+g   +rfG ++  +i+++l   g++l   +++++ + +li++  l+G g  l+s +
  CTQ29560.1 247 WSLASFAAITFTGRYFNRFGPRPLVVIGCLLQAMGIMLLLKIDADSPLALLILAFTLMGGGGSLCSST 314
                 45666777777788888888888888888888888888887777777777777777777665555555 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   7.0   2.6e-05     0.092     222     325 ..       4     105 ..       2     123 .. 0.81
   2 !   14.0  10.8     4e-06     0.014     218     327 ..     196     306 ..      95     319 .. 0.74
   3 ?   -3.3   0.3       0.7   2.5e+03     154     184 ..     351     376 ..     340     391 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.6e-05
       MFS_2 222 rnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvl 320
                 r+r + ++l++f+l +  +++   ++    +    + s+ ++++ + +++ ++++p+ ++l  r+g k+++ll++ l  ++ + + l+  ++l  +++ 
  CTQ29560.1   4 RHRVATVFLFGFFLDLINMFIASIAFPAISRALAVSVSQLAWVSNAYILGLTVVVPFSAWLSERWGAKRLFLLSLGLFSLGALAAGLA--NSLSELILW 100
                 7899999********************99999999**************************************988766655555444..555555554 PP

       MFS_2 321 lviag 325
                  ++ g
  CTQ29560.1 101 RTLQG 105
                 45544 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 4e-06
       MFS_2 218 kevfrnraflillllfllaalalgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnll 315
                  +++ ++ ++  +l++l++  ++   n   +Yyl+ v g +  a+ ++++   ++++++i +  +   r+g + ++++g ll++++ +l+l +++ + l
  CTQ29560.1 196 LSLLADPLLRFAMLIYLCVPGMFIGVNVVGMYYLQRVTGmAPGAIGALMVPWSLASFAAITFTGRYFNRFGPRPLVVIGCLLQAMGIMLLLKIDADSPL 294
                 356666777778888999999999999999*********9999999999999***************************************99888888 PP

       MFS_2 316 lflvllviagfg 327
                 ++l+l++  + g
  CTQ29560.1 295 ALLILAFTLMGG 306
                 888887766554 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.7
       MFS_2 154 afllvlilgglkserkgylifaliialLmll 184
                 a ll++++ +      ++  + +  a+++ll
  CTQ29560.1 351 ALLLRVFPPV-----YAWQGVFISAAVITLL 376
                 4444444443.....2222222222222222 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.3   0.00012      0.41      64     217 ..      26     181 ..       4     188 .. 0.77
   2 ?    7.8   0.5   0.00026      0.94      86     142 ..     246     305 ..     229     322 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00012
       TRI12  64 asalpnilqdvgqsens.slfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaag...pag...asplfv 155
                 + a+p i + +  s  + + +s  + +g +v +     l++r+g + + +l+  l  +ga+    a+ +  l+   tl g+  g   p g   + plf 
  CTQ29560.1  26 SIAFPAISRALAVSVSQlAWVSNAYILGLTVVVPFSAWLSERWGAKRLFLLSLGLFSLGALAAGLANSLSELILWRTLQGMGGGlliPLGqalTWPLFQ 124
                 457888888888887663678999********************98888888888889********************998876444444111557776 PP

       TRI12 156 gelmsnktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwy 217
                      +++k+    ++ +  ++  + sp +g  l    swrw+f+  + ++ ++ +l v w 
  CTQ29560.1 125 PH---ERAKLS-AAVMLVGLLAP-ACSPAIGGLLVEAFSWRWVFFASLPVALLTFVLAVRWL 181
                 54...334433.23333334444.489*******************9999999999999996 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00026
       TRI12  86 lwttgqavsilvmgrltdrfgrrpfvilthilglvgaivg..ctat.kfntllaamtllg 142
                  w++    +i   gr  +rfg rp+v++  +l  +g ++     a+  +  l+ a+tl+g
  CTQ29560.1 246 PWSLASFAAITFTGRYFNRFGPRPLVVIGCLLQAMGIMLLlkIDADsPLALLILAFTLMG 305
                 588889999********************9999999865411334313555666777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2942.15
//
Query:       CTQ29561.1  [L=125]
Description: putative cytoplasmic protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0001   22.6   0.1    0.00013   22.3   0.1    1.1  1  DUF4440   Domain of unknown function (DUF4440)
  ------ inclusion threshold ------
      0.047   14.3   0.1      0.059   14.0   0.1    1.1  1  SnoaL_2   SnoaL-like domain


Domain annotation for each model (and alignments):
>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   1.5e-08   0.00013      14     103 ..      23     112 ..      12     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.5e-08
                 CT-HHHHHHCEEEEEEEE-TTS-EEEHHHHHHHHHCCH..CEEEEEEEEEEEEEEE.TTEEEEEEEEEEEECCTTEEEEEEEEEEEEEEEETT CS
     DUF4440  14 agdaealaallapdavlvgpsgtvldkeellealeagf..aagrslelteeevrvl.gdlAvvtgrytfegrgdgepvegrgrftsvwrkegg 103
                 +g+aeal + +a+d++++  sg+  d++++   + +++   +g +++++  e+     d+A+v +r + +     + v+   ++t+++++ +g
  CTQ29561.1  23 EGSAEALMKRFAADFTMIPLSGEKMDYPTVSRFFHHAGgsRPGLDIVVDQMEIISEwHDGAAVLYRESQTLADSSQNVR---WSTAIFQQAEG 112
                 5889******************************88551155667788887777667*********9988754444443...58899999876 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   6.5e-06     0.059      10     100 ..      23     115 ..      12     117 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.5e-06
                 TTCHHHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEE.....EEETTEEEEEEEEEEEEETTSSEEEE.EEEEEEEEETTEEE CS
     SnoaL_2  10 agdldalaalfapdvvwedpggelrGreairaffralfaafpdlrfeihdv.....vadgdrvavewtvtgtipatgrgvtv.rgvdvfrvrdGkiv 100
                 +g ++al+  fa+d+++    ge      + +ff ++  + p+l++ ++++       dg  v+ +   t    a+ ++ +v + +++f+ ++Gkiv
  CTQ29561.1  23 EGSAEALMKRFAADFTMIPLSGEKMDYPTVSRFFHHAGGSRPGLDIVVDQMeiiseWHDGAAVLYRESQT---LADSSQ-NVrWSTAIFQQAEGKIV 115
                 68899******************999**************************864444455555544443...344444.44499999*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 937.59
//
Query:       CTQ29562.1  [L=330]
Description: RNA polymerase, sigma S (sigma 38) factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-21   75.8   0.6    3.3e-21   74.8   0.2    1.8  2  Sigma70_r2    Sigma-70 region 2
    4.1e-21   74.9   9.3    1.3e-20   73.3   1.8    3.3  4  Sigma70_r3    Sigma-70 region 3
    3.8e-17   61.5   3.7    2.5e-15   55.7   2.8    2.6  2  Sigma70_r4    Sigma-70, region 4
    9.8e-12   44.7   0.1      3e-11   43.1   0.1    1.9  1  Sigma70_r1_2  Sigma-70 factor, region 1.2


Domain annotation for each model (and alignments):
>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.2   7.5e-25   3.3e-21       1      70 [.      94     163 ..      94     164 .. 0.96
   2 ?   -2.8   0.0       1.2   5.5e+03       2      26 ..     264     291 ..     263     294 .. 0.69

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 7.5e-25
                 HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                 ++e++l+lv+++arr+ ++g+   Dl+ e++l+l+rave+fdperg++fs+++++++r+++ +++  + r
  CTQ29562.1  94 MIESNLRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTR 163
                 689***********************************************************99988877 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHC..T-THH.HHHHH CS
  Sigma70_r2   2 verylplvkrlarrl..lgsga.daeDl 26 
                 +e + ++   larr+  lg  a + eD+
  CTQ29562.1 264 FELNAKQREVLARRFglLGYEAaTLEDV 291
                 5666677777899998777664477775 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.21   9.5e+02      19      45 ..      33      59 ..      30      62 .. 0.77
   2 ?   -3.1   0.0       1.9   8.5e+03      25      47 ..      87     109 ..      81     110 .. 0.79
   3 !   73.3   1.8   2.9e-24   1.3e-20       2      76 ..     174     248 ..     173     250 .. 0.97
   4 ?    4.2   0.0      0.01        46      20      40 ..     285     305 ..     281     310 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.21
                SXXXHHHHHHHHTXXHHHHHHHHHHHX CS
  Sigma70_r3 19 rePtpeEiAeeLglseekVrevleaar 45
                 eP++ ++Aee  ls+   ++vl+a++
  CTQ29562.1 33 EEPSDSDLAEEELLSQGATQRVLDATQ 59
                69********98877777777777665 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.9
                 HHHHHHTXXHHHHHHHHHHHXXX CS
  Sigma70_r3  25 EiAeeLglseekVrevleaarep 47 
                 ++A +  + e+ +r v+++ar++
  CTQ29562.1  87 DVASRRRMIESNLRLVVKIARRY 109
                 57777888888889999999887 PP

  == domain 3  score: 73.3 bits;  conditional E-value: 2.9e-24
                 HHHHHHHHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHHHHHHHXXXEETTXBSSSSTTXBSTTTXBXSSSXXHHH CS
  Sigma70_r3   2 klnkikraqreLeqelgrePtpeEiAeeLglseekVrevleaarepvSldlpvgeeedtelgdlleddeaespee 76 
                 +ln + r++reL+++l++eP++eEiAe+L+ ++++V ++l+++++ +S+d+p g +++++l d+l+d++ ++pe+
  CTQ29562.1 174 ELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPED 248
                 799**********************************************************************98 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.01
                 XXXHHHHHHHHTXXHHHHHHH CS
  Sigma70_r3  20 ePtpeEiAeeLglseekVrev 40 
                 ++t e++  e gl+ e+Vr++
  CTQ29562.1 285 AATLEDVGREIGLTRERVRQI 305
                 5899***************98 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0075        34      19      39 ..     191     211 ..     177     214 .. 0.80
   2 !   55.7   2.8   5.6e-19   2.5e-15       1      50 []     262     315 ..     262     315 .. 0.98

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0075
                 TT--HHHHHHHHTS-HHHHHH CS
  Sigma70_r4  19 eglTleEIgerlgiSrerVrq 39 
                 ++ + eEI+e+l+ +   V++
  CTQ29562.1 191 HEPSAEEIAEQLDKPVDDVSR 211
                 56688********99988887 PP

  == domain 2  score: 55.7 bits;  conditional E-value: 5.6e-19
                 HHHHS-HHHHHHHHHHH....TTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrf....geglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 +L +L++++revl  rf    +e  Tle++g++ g++rerVrqi+ ++lr+LR+
  CTQ29562.1 262 WLFELNAKQREVLARRFgllgYEAATLEDVGREIGLTRERVRQIQVEGLRRLRE 315
                 6889*************************************************7 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.1   6.7e-15     3e-11       1      33 [.      56      88 ..      56      89 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.1 bits;  conditional E-value: 6.7e-15
                  HHHHHHHHHHHHSX--THHHHHHHHHHHHCCHH CS
  Sigma70_r1_2  1 DpvrlYLrEIGriPLLtaeEEveLAkrieaGde 33
                  D+++lYL EIG  PLLtaeEEv  A+r+ +Gd 
    CTQ29562.1 56 DATQLYLGEIGYSPLLTAEEEVYFARRALRGDV 88
                  899****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2535.50
//
Query:       CTQ29563.1  [L=378]
Description: outer membrane lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-31  108.5   1.4    1.5e-31  108.5   1.4    2.5  4  Peptidase_M23    Peptidase family M23
    2.3e-10   40.4   0.1    7.3e-10   38.8   0.0    1.9  2  LysM             LysM domain
     0.0026   17.5   0.0       0.23   11.3   0.0    3.0  3  Biotin_lipoyl_2  Biotin-lipoyl like


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.5   9.1e+03      32      32 ..     109     109 ..      85     127 .. 0.47
   2 ?   -1.0   0.2      0.35   2.1e+03      18      35 ..     149     164 ..     137     224 .. 0.54
   3 ?   -2.3   0.1      0.92   5.5e+03      38      38 ..     217     217 ..     185     254 .. 0.52
   4 !  108.5   1.4   2.5e-35   1.5e-31       3      96 .]     278     371 ..     276     371 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.5
                    T CS
  Peptidase_M23  32 g 32 
                    +
     CTQ29563.1 109 S 109
                    1 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.35
                    ESSSEEEEEEEEETTTEE CS
  Peptidase_M23  18 AaadGtVvfagkkegyGn 35 
                    A + G+V+++g+ +  G+
     CTQ29563.1 149 ALNVGQVLQVGNAS--GQ 164
                    66667777777622..22 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.92
                    E CS
  Peptidase_M23  38 i 38 
                    +
     CTQ29563.1 217 M 217
                    2 PP

  == domain 4  score: 108.5 bits;  conditional E-value: 2.5e-35
                    ESSEEEEETTT-EEEESSSEEEEEEEE.ETTTEEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEBSTSSCSSSEEEEEEEETTEEE-C CS
  Peptidase_M23   3 hkGidiaapkgtpVlAaadGtVvfagk.kegyGnvviidhgdgystlyahlskisvkegqkVkaGqvIGtvgstgrstgphLhfeirkngkavdp 96 
                    +kGidia +kg+ ++A+adG+Vv+ag+  +gyGn++ii+h+d y + yah++++ v+e+q+VkaGq+I+t+gstg ++   Lhfeir +gk+v+p
     CTQ29563.1 278 NKGIDIAGSKGQAIVATADGRVVYAGNaLRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTG-TSSTRLHFEIRYKGKSVNP 371
                    79*************************988*********************************************.6669**************9 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.2e-13   7.3e-10       1      43 [.     116     158 ..     116     159 .. 0.98
   2 ?   -2.4   0.0       0.9   5.4e+03      35      41 ..     339     345 ..     334     346 .. 0.78

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.2e-13
                 EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEE CS
        LysM   1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLki 43 
                 YtVk+GDTL+ IA   g ++++l++ Nn+  p  + +Gq+L++
  CTQ29563.1 116 YTVKRGDTLFYIAWVTGNDFRDLAQRNNIPAPYALNVGQVLQV 158
                 9****************************************87 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.9
                 --TTEEE CS
        LysM  35 ifpGqkL 41 
                 +++Gqk+
  CTQ29563.1 339 VKAGQKI 345
                 799**98 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.02   1.2e+02      24      33 ..     118     127 ..     117     128 .. 0.91
   2 ?   -2.7   0.0       0.9   5.4e+03      19      30 ..     295     306 ..     290     306 .. 0.68
   3 !   11.3   0.0   3.9e-05      0.23      16      33 ..     331     348 ..     329     358 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.02
  Biotin_lipoyl_2  24 VkaGdvLael 33 
                      Vk Gd+L+ +
       CTQ29563.1 118 VKRGDTLFYI 127
                      9*******87 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.9
  Biotin_lipoyl_2  19 kdGqrVkaGdvL 30 
                       dG +V aG+ L
       CTQ29563.1 295 ADGRVVYAGNAL 306
                      577778787765 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 3.9e-05
  Biotin_lipoyl_2  16 lnVkdGqrVkaGdvLael 33 
                       +V++ q+VkaG+ +a+ 
       CTQ29563.1 331 MLVREQQEVKAGQKIATM 348
                      589*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2852.31
//
Query:       CTQ29564.1  [L=208]
Description: L-isoaspartate protein carboxylmethyltransferase type II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-77  257.7   0.0    9.6e-77  257.5   0.0    1.0  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    3.9e-06   26.1   0.0    4.9e-06   25.8   0.0    1.2  1  RrnaAD           Ribosomal RNA adenine dimethylase
    1.4e-05   25.7   0.0    2.6e-05   24.9   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    1.6e-05   24.7   0.0    2.1e-05   24.3   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
     0.0027   18.3   0.0     0.0045   17.6   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
     0.0047   16.8   0.0     0.0084   16.0   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.019   15.0   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
      0.064   12.9   0.0      0.092   12.4   0.0    1.2  1  NodS             Nodulation protein S (NodS)
      0.065   12.5   0.0      0.093   12.0   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
       0.12   11.5   0.0       0.19   10.8   0.0    1.4  1  DREV             DREV methyltransferase
       0.15   11.6   0.0       0.22   11.1   0.0    1.2  1  MTS              Methyltransferase small domain


Domain annotation for each model (and alignments):
>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.5   0.0   5.9e-80   9.6e-77       2     209 ..       5     206 ..       4     207 .. 0.98

  Alignments for each domain:
  == domain 1  score: 257.5 bits;  conditional E-value: 5.9e-80
                 HHHHHHHHHHHTTS---HHHHHHHHHS-GGGGSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCE CS
        PCMT   2 kkealieelkkkgviksdkvaealeevdReefvpesfkekaYedaplsigynatiSaphmvalalellelkkgarvLevGsGsGyltavlarlvgekgr 100
                 + e+l+++l+ +g i++++v+ea++ v+Re+fv+e+f++ka+e+++l+ig+++tiS+p+mva+++ell+l++ +rvLe+G+GsGy+ta+la+lv++++ 
  CTQ29564.1   5 RVESLLNQLRTQG-IVDERVLEAIALVPREKFVDEAFEHKAWENTALPIGQGQTISQPYMVARMTELLTLTPESRVLEIGTGSGYQTAILAHLVHHVC- 101
                 5689*********.999*******************************************************************************99. PP

                 EEEEESBHHHHHHHHHHHHHCTTCSEEEEES-GGGTTGGG-SEEEEEESSBBSS--HHHHHTEEEEEEEEEEESBSSSEEEEEEEEETTTEEEEEEEEE CS
        PCMT 101 vvsierikelveeakrnlkkldlenvivvvgDGrkGyeekaPYdaihvgaaapeiPealidQLkeGGrlvvPvgeeeeQvlklvdkkadgkvvikklee 199
                   s+erik+l+++a+r+lk+ldl+nv++++gDG++G++++aP+dai+v+aa+peiP+al+ QL++ G lv+Pvg ee+Q lk++++++ ++++i+++e+
  CTQ29564.1 102 --SVERIKSLQWQARRRLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALLAQLDDDGVLVLPVG-EEHQFLKRIRRRG-NEFIIDTVEA 196
                 ..************************************************************************.9************.99******** PP

                 E---B-BCCC CS
        PCMT 200 vrfvpltdke 209
                 vrfvpl+++e
  CTQ29564.1 197 VRFVPLVKGE 206
                 ******9976 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0     3e-09   4.9e-06      19      86 ..      64     133 ..      54     178 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3e-09
                 HHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT..TCCCEEEE-S-CC CS
      RrnaAD  19 ineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls..kdeklkvvhqDfl 86 
                 +++  + l l+++  vleig+G G +T++La  + +v ++E  ++L    + +l+  + +++   h D+ 
  CTQ29564.1  64 VARMTELLTLTPESRVLEIGTGSGYQTAILAHLVHHVCSVERIKSLQWQARRRLKqlDLHNVSTRHGDGW 133
                 56666778899*******************************9999999999888777788887777765 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.6e-08   2.6e-05       1      72 [.      79     149 ..      79     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.6e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTEEEEEEES CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsfDlvvssg 72 
                      vL++G+G+G  t+ la+ +  ++v  v+  +++  +ar+r+++ +l nv+ ++gd  +  ++ + fD+++++ 
       CTQ29564.1  79 VLEIGTGSGYQTAILAHLV--HHVCSVERIKSLQWQARRRLKQLDLhNVSTRHGDGWQGWQARAPFDAIIVTA 149
                      9*****************8..9*******************998889*********88778889*****9954 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.3e-08   2.1e-05       4      83 ..      76     150 ..      73     195 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.3e-08
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnev 83 
                      + rvl++G+G+G+ t  la+++    +v ++++ +    +Ar ++++l l nv+ ++gd  +  +   ++++fD i+  ++
       CTQ29564.1  76 ESRVLEIGTGSGYQTAILAHLV---HHVCSVERIKSLQWQARRRLKQLDLHNVSTRHGDGWQgWQ---ARAPFDAIIVTAA 150
                      679****************876...57********************************888566...4599**9988533 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.8e-06    0.0045       1      69 [.      80     149 ..      80     185 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.8e-06
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvsse 69 
                      L++G+G+G+ ++ la+ +++v  v+  k +  +a+++ ++ +l +v+ +++d  +   + + fD+++++ 
       CTQ29564.1  80 LEIGTGSGYQTAILAHLVHHVCSVERIKSLQWQARRRLKQLDLhNVSTRHGDGWQGWQARAPFDAIIVTA 149
                      89*************999**********************999999******999666678999998876 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.1e-06    0.0084      14      57 ..      68     110 ..      56     172 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.1e-06
  Methyltransf_23  14 erllpklraggrvLdiGcGtGillevlrengfsvtgvDlspeav 57 
                       +ll+ l + +rvL+iG+G+G+ + +l+  +++v+ v+    ++
       CTQ29564.1  68 TELLT-LTPESRVLEIGTGSGYQTAILAHLVHHVCSVERIKSLQ 110
                      44553.8999************9999999999988888754433 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.1e-05     0.019      14      78 ..      65     122 ..      59     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
  Methyltransf_32  14 akllkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkf 78 
                      a++++   + +++ +v+++G G gY + +la+    + ++v++++  ++l  +a++r ++l   +
       CTQ29564.1  65 ARMTEL-LTLTPESRVLEIGTGSGYQTAILAH----LVHHVCSVERIKSLQWQARRRLKQLD--L 122
                      444444.4667899******************....699******************99998..4 PP

>> NodS  Nodulation protein S (NodS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.6e-05     0.092      30     113 ..      66     148 ..      56     151 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.6e-05
        NodS  30 rlaqilrlslaqgsiadalevGcaaGalterlapyckrltvvdvveeaiararervkes..shiswivsd.vqqfstdekfdlivva 113
                 r++++l l+      + +le+G  +G  t  la + +++  v+ +++   +ar+r+k+    ++s    d  q  ++ + fd i+v+
  CTQ29564.1  66 RMTELLTLT----PESRVLEIGTGSGYQTAILAHLVHHVCSVERIKSLQWQARRRLKQLdlHNVSTRHGDgWQGWQARAPFDAIIVT 148
                 555555554....34679**************************************9852146666666624668889999999987 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.7e-05     0.093      51     132 ..      64     146 ..      54     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.7e-05
                 HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG---..--SEEE CS
        CMAS  51 ldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedlde..kvdrvv 132
                 + ++ e l+l p +++L+iG+G G+ +   ++    +v+++   k  + +a++r+++ldl++  + +  +++  +   ++d+++
  CTQ29564.1  64 VARMTELLTLTPESRVLEIGTGSGYQTAILAHL-VHHVCSVERIKSLQWQARRRLKQLDLHNVSTRHGDGWQGWQAraPFDAII 146
                 56778999****************988777666.6689999999999999*********9999999999999877666899886 PP

>> DREV  DREV methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.19      95     138 ..      76     123 ..      60     146 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
        DREV  95 dkklldlGaGdGeitkrvaptfeevyate....lsetmrdrlkkkkyn 138
                 + ++l++G+G G  t ++a  +++v + e    l ++ r rlk+++ +
  CTQ29564.1  76 ESRVLEIGTGSGYQTAILAHLVHHVCSVEriksLQWQARRRLKQLDLH 123
                 579**********************99983333455556666666543 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.22      27     103 ..      71     147 ..      63     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
                 CHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTST.TS-EEEEEE CS
         MTS  27 lpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeve.ekkfdlivs 103
                 l+ + + +vl +G+G G+ +a la+   +  v  v+  +     a++ l++ +l+ v++++ d+ + ++  + fd+i+ 
  CTQ29564.1  71 LTLTPESRVLEIGTGSGYQTAILAHLVHH--VCSVERIKSLQWQARRRLKQLDLHnVSTRHGDGWQGWQaRAPFDAIIV 147
                 44456789*****************9998..6666665555567999999999999***********995678999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1713.39
//
Query:       CTQ29565.1  [L=253]
Description: broad specificity 5'(3')-nucleotidase and polyphosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-57  193.6   0.0    3.6e-57  193.3   0.0    1.1  1  SurE      Survival protein SurE


Domain annotation for each model (and alignments):
>> SurE  Survival protein SurE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.3   0.0     2e-61   3.6e-57       1     193 [.       3     181 ..       3     183 .. 0.90

  Alignments for each domain:
  == domain 1  score: 193.3 bits;  conditional E-value: 2e-61
                 EEEE-SS-TT-HHHHHHHHHHTTTTSEEEEEEESSS-TTCTTS--SSSEEEEEEEECSTTTCEEEE.SS-HHHHHHHHHHTTTTTS.SSEEEEEEEES- CS
        SurE   1 iLltNDDGieapgiralvealaaaghevvvvaPdserSgigkaltleeplrveseeeeeeeeeyav.sGtPadcvklaleellkekkpdlVvSGiNhGa 98 
                 iLl+NDDGi+apgi++l++al++  +ev vvaPd++rSg++++ltle++lr+ +     e+  +av  GtP+dcv l++++l++  +pd+VvSGiN G+
  CTQ29565.1   3 ILLSNDDGIHAPGIQTLAKALRE-FAEVQVVAPDRNRSGASNSLTLESSLRTFTF----ENGDIAVqMGTPTDCVYLGVNALMRP-RPDIVVSGINAGP 95 
                 8*********************6.56************************94444....355666669**************965.7************ PP

                 --GGGGGG-HHHHHHHHHHHTTSEEEEEEEESSSSS-SSS---HHHHHHHHHHHHTTETTS-...SS-EEEEEEESS.GCG-SEEEE-B--CCSC CS
        SurE  99 NlgtdvlySGTvgAaleaalegipaiAvSlaskkeeekkeedtfeaaakvaaklveklieklllekvellnvNvPeleeeeikgvkvtrlgrrry 193
                 Nlg+dv+ySGTv+Aa+e+ + g+pa+AvSl+ +   +     ++++aa+v++++++ l +   l+++ +ln+NvP+l+ ++ikg++vtr g+r+ 
  CTQ29565.1  96 NLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGY---Q-----HYDTAAAVTCTILRALSR-EPLRTGRILNINVPDLPLDQIKGIRVTRCGNRHP 181
                 ******************************964...4.....599*9********88855.5569**************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 2122.19
//
Query:       CTQ29566.1  [L=349]
Description: pseudoruidine synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-61  206.9   0.0    1.6e-41  142.5   0.0    2.0  2  TruD      tRNA pseudouridine synthase D (TruD)


Domain annotation for each model (and alignments):
>> TruD  tRNA pseudouridine synthase D (TruD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.5   0.0   9.1e-46   1.6e-41       8     171 ..      10     167 ..       4     173 .. 0.90
   2 !   62.5   0.0   1.8e-21   3.2e-17     257     416 .]     188     337 ..     178     337 .. 0.91

  Alignments for each domain:
  == domain 1  score: 142.5 bits;  conditional E-value: 9.1e-46
        TruD   8 vtdtegigGrlrespeDFiVeEieefsgeeeadegeylvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlis..irkvepeeleale 104
                 +  ++   G l+++peDF+V E   f+    + ege++++r+ k++ +t  ++ +la+ l+i+ ++v+faG KDk+AvT Q+++  + + e  +l++++
  CTQ29566.1  10 LHGKPQSSGLLKANPEDFLVVEDLGFAP---DGEGEHVLVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCarVPGKEMPDLSKFQ 105
                 56778899************99867744...367**************************************************54466788889999* PP

        TruD 105 ikdvelevvgrarrklrlGdLaGNkFeirvrdvaeeeeaakraeeileeleekggvPNyfGvQRFGs 171
                 +++ ++++  r++rklrlG L+GN+F++++r+++++    +++e  l++++e+g vPNyfG QRFG 
  CTQ29566.1 106 LEGCQVLEYARHKRKLRLGALKGNQFTVILREISDR----QDVETRLQAIAERG-VPNYFGAQRFGI 167
                 ********************************9544....479999******98.***********6 PP

  == domain 2  score: 62.5 bits;  conditional E-value: 1.8e-21
        TruD 257 knLqrlFvhAyqSylFNrvlseRlerglpldepveGDvvifaeerlpdtdrlqlvteknveevkrliergrafvtaplvGtetelaegevgeierevle 355
                 +n ++++++A++S lFN+ +s Rl++  +++++v+GD +  a +      +  +vt ++ e  +  +++ + ++ta+l+G+    ++ ++ ++e++ ++
  CTQ29566.1 188 RNKRSFWLSAARSALFNQQVSIRLKKT-EFNQVVDGDALQLAGRG-----SWFVVTPEELEVSQARVHNRELMITATLPGSGDWGSQRDALAFEQAAIA 280
                 567899*******************98.9*************777.....99********************************************999 PP

        TruD 356 eegleledFklpklpelsskGtrRaillrvedlelsaeede.ltleFsLpkGsYATvvlrEi 416
                 ee   l+   + +    +++ +rRa+ll +++l+ +  +d  ++l+F Lp Gs+AT+v+rE+
  CTQ29566.1 281 EET-ALQALLVRE----KVEAARRAMLLYPQQLSWNWWDDVtVELRFWLPAGSFATSVVREL 337
                 954.556666666....78899**********99999887669*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2812.33
//
Query:       CTQ29567.1  [L=159]
Description: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-67  224.1   0.0      1e-66  224.0   0.0    1.0  1  YgbB      YgbB family


Domain annotation for each model (and alignments):
>> YgbB  YgbB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.0   0.0   5.7e-71     1e-66       1     154 [.       1     154 [.       1     155 [. 0.99

  Alignments for each domain:
  == domain 1  score: 224.0 bits;  conditional E-value: 5.7e-71
                 EEEEEEEEEEEEEEECEEEETTEEEEESEEEESSSTCHHHHHHHHHHHHHHTT--SHHHHSTTTCGGCTTTCHHHHHHHHHHHHHHTTEEEEEEEEEEE CS
        YgbB   1 iriGlGyDvHrlaegrklvlgGveieaekgllahSDgDvllhAlvDAllGalalgdigelfpdtdpkykgadSaelLeevlellkekgykivnvdvtii 99 
                 +riG+G+DvH++  + ++++gGv+i++ekgllahSDgDv+lhAl+DAllGa+algdig+lfpdtdp++kgadS+elL+e+++++++kgy+++nvdvtii
  CTQ29567.1   1 MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTII 99 
                 79**********9889*********************************************************************************** PP

                 CSSSTCGGGHHHHHHHHHHHHTS-GGGEEEEEEETTTSHHHHTTSEEEEEEEEEE CS
        YgbB 100 aekpklapykeamrenlakllgleeeqvsvkattteklgfvGrgegiaalavvll 154
                 a++pk+ p++++mr  +a+ lg++ ++v+vkattteklgf+Grgegia+ av+ll
  CTQ29567.1 100 AQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALL 154
                 *****************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1283.86
//
Query:       CTQ29568.1  [L=259]
Description: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-90  301.1   0.0    5.7e-90  300.9   0.0    1.0  1  IspD          2-C-methyl-D-erythritol 4-phosphate cytidylyltr
      2e-16   60.8   1.8    2.7e-16   60.3   1.8    1.3  1  NTP_transf_3  MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.9   0.0   6.4e-94   5.7e-90       1     221 []      31     252 ..      31     252 .. 0.97

  Alignments for each domain:
  == domain 1  score: 300.9 bits;  conditional E-value: 6.4e-94
                 EEEEEECTTSSCTT-SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGGHHHHHHHHGG..CCEEEEE--SSHHHHHHHHHHTTSSTTSEEEE CS
        IspD   1 vvvvipAAGsGkRmkaglpKqflelkgqtllehtvdallaskavdkivvvvseddteefeqllld..ksiqlvaGGdeRaesVlnglkalegeakfVLv 97 
                 v++v+pAAG+G+Rm++++pKq+l++ ++t+leh+v+alla  +v+++v++vs+ d  +f+ql+l+  ++i++v+GG eRa+sVl+gl+al++  ++VLv
  CTQ29568.1  31 VCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHAVAALLADARVQRVVIAVSPGD-CRFSQLPLAqhPQITVVDGGAERADSVLAGLQALPEA-QWVLV 127
                 79*****************************************************.899999887779*********************9876.***** PP

                 --TT-TT--HHHHHHHHHHHHTTCSEEEEEEE-SSEEEEEETTT..BEEEEETGTTEEEEEEEEEEEHHHHHHHHHHHHHCT---SSHHHHHHHTT--E CS
        IspD  98 HDaARpllkaadiaellaaaeqstqgailalpvkDtikrveadg..lvaetedRegLwaaqtPqgFrvdlllaahakgeqegaeitDdaslvekiGlsv 194
                 HDaARp+l+++d+ +ll   e+s+ g ila+pv+Dt+kr+e  g  ++a+t+dR++Lw+a+tPq+F+++ll ++++++ +ega+itD+as++e++G+++
  CTQ29568.1 128 HDAARPCLHQDDLSRLLSLCETSRVGGILAAPVRDTMKRAEP-GktAIAHTVDRNDLWHALTPQFFPRELLVDCLTRALNEGATITDEASALEYCGFHP 225
                 *****************************************4.4469**************************************************** PP

                 EEEE--TTG----SHHHHHHHHHHHHH CS
        IspD 195 kvVeGeednlKittpeDlalAeailrr 221
                 ++V+G++dn+K+t+peDlalAe++l+r
  CTQ29568.1 226 QLVAGRADNIKVTRPEDLALAEFYLTR 252
                 *************************85 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   1.8   3.1e-20   2.7e-16       1     138 [.      33     197 ..      33     230 .. 0.75

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 3.1e-20
                   EEEEEESS-TTTTT..THHHHCCCCCCHHHHHHHHH.CTT.-CEEEEECSHCHHH.H..HHTTCTS-EEE-TTSS-SHHHHHHHHHHHH.SSSCEEE CS
  NTP_transf_3   1 aviLAGGrSsRmgg..dKallplggkpllervldal.raagvdevvvvggdeevl.a..alarlgvrvvededpgkgplaslaaalraaadadavlv 91 
                   av+ A+G ++Rm++  +K+ l +g+k++le++++al ++a v++vv+++ + +++ +   la+++  +v+d   g+  + s++a+l+a+++a++vlv
    CTQ29568.1  33 AVVPAAGFGRRMQTecPKQYLSIGNKTILEHAVAALlADARVQRVVIAVSPGDCRfSqlPLAQHPQITVVD--GGAERADSVLAGLQALPEAQWVLV 127
                   6888*********889***************9988736668*******98854431211234444444444..48999******************* PP

                   EETT-TT--HHHHHHHHHCHHHHT.SSEEEEESSSEE...................EECC...EEEGGGH CS
  NTP_transf_3  92 lacDmPlltpelverllaaaaasg.advvvptyeger...................ghpl...lfrarll 138
                     +  P+l ++ + rll  ++ s+ + ++++  ++++                   +h l   +f+++ll
    CTQ29568.1 128 HDAARPCLHQDDLSRLLSLCETSRvGGILAAPVRDTMkraepgktaiahtvdrndlWHALtpqFFPRELL 197
                   ********************86663455555555555566666666666666666655555557777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1917.78
//
Query:       CTQ29569.1  [L=105]
Description: cell division protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-30  104.4   0.0    2.8e-30  103.9   0.0    1.2  1  DivIC     Septum formation initiator
  ------ inclusion threshold ------
      0.048   14.1   0.2      0.067   13.6   0.2    1.2  1  CENP-H    Centromere protein H (CENP-H)
       0.11   12.5   0.2       0.17   11.9   0.2    1.4  1  FtsL      Cell division protein FtsL


Domain annotation for each model (and alignments):
>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.0   4.7e-34   2.8e-30       1      79 [.      11      89 ..      11      90 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 4.7e-34
                XXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       DivIC  1 llllfllllifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerARselglvkpgEtvyrvve 79
                ll++++++l+fgk+gl++y +++ +++a+qa++aklka+n++L ae++dL+ ++++ieerAR+el + +pgEt+yr+v+
  CTQ29569.1 11 LLVWLQYSLWFGKNGLHDYTRVNDDVTAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTRPGETFYRLVP 89
                79************************************************99************************996 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   1.1e-05     0.067      21      70 ..      28      77 ..      23      83 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
      CENP-H 21 elrelqeeltevekenlrlkrknrelaaellelakekesekeklkeelek 70
                +++ +++++t  ++ n +lk++n +l+ae+  l+  +e+ +e++++el+ 
  CTQ29569.1 28 DYTRVNDDVTAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSM 77
                578899************************99999999999888888765 PP

>> FtsL  Cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   2.8e-05      0.17      14      88 ..       3      81 ..       1      88 [. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.8e-05
        FtsL 14 kvlllllllvlvsavavvlithqtRqlvselekllse...rdkLeeewrnLlLEestl.sahsrvesiAreqLkMkrps 88
                k++llll+l+++   +  +     +  +  ++++  +   + kL++ +++L  E   l + +  +e++Ar++L+M rp 
  CTQ29569.1  3 KLTLLLLALLVWLQYSLWFGKNGLHDYTRVNDDVTAQqatNAKLKARNDQLFAEIDDLnGGQEAIEERARNELSMTRPG 81
                6666677777776666666666666666555555444111578999999999998887256889*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 830.01
//
Query:       CTQ29570.1  [L=108]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-48  161.1   7.8    7.7e-48  160.9   7.8    1.0  1  DUF3561   Protein of unknown function (DUF3561)


Domain annotation for each model (and alignments):
>> DUF3561  Protein of unknown function (DUF3561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.9   7.8   4.3e-52   7.7e-48       1     107 []       1     108 []       1     108 [] 0.99

  Alignments for each domain:
  == domain 1  score: 160.9 bits;  conditional E-value: 4.3e-52
     DUF3561   1 mrnatnltlskadka.eeedeptyslsGavvGfvsyllalaiPfllyGsntlffllytWPfflallPvsvlvGvalsvllrgkllysilatllavvllf 98 
                 mrn++nl++++++   +  de+t+slsGa vGf+s+llal+iPfllyGsntlffllytWPfflal+Pv+v+vG+al++ll+gkllys+ at+l+v+l+f
  CTQ29570.1   1 MRNTQNLSIIRSEPPpAIGDETTWSLSGAAVGFISWLLALGIPFLLYGSNTLFFLLYTWPFFLALMPVAVVVGIALHSLLNGKLLYSVSATILTVGLMF 99 
                 9************99899********************************************************************************* PP

     DUF3561  99 wllflflsG 107
                 +llfl+l+G
  CTQ29570.1 100 ALLFLWLLG 108
                 *******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 879.16
//
Query:       CTQ29571.1  [L=201]
Description: adenosine 5'-phosphosulfate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.5e-74  246.5   0.0    1.2e-73  246.2   0.0    1.1  1  APS_kinase       Adenylylsulphate kinase
    7.2e-07   29.5   0.0    1.1e-06   28.9   0.0    1.4  1  AAA_33           AAA domain
    1.7e-05   25.4   0.0    2.8e-05   24.7   0.0    1.4  1  AAA_18           AAA domain
    0.00021   20.9   0.0    0.00029   20.4   0.0    1.2  1  KTI12            Chromatin associated protein KTI12
    0.00059   19.9   0.0    0.00082   19.4   0.0    1.2  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
    0.00069   20.0   0.4     0.0011   19.4   0.4    1.6  1  AAA_16           AAA ATPase domain
     0.0032   17.2   0.2      0.007   16.1   0.0    1.7  2  AAA_29           P-loop containing region of AAA domain
     0.0053   16.4   0.0     0.0072   16.0   0.0    1.2  1  SRP54            SRP54-type protein, GTPase domain
     0.0059   16.1   0.0     0.0085   15.6   0.0    1.3  1  ParA             NUBPL iron-transfer P-loop NTPase
     0.0064   15.5   0.0     0.0089   15.0   0.0    1.2  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.017   14.4   0.0    1.3  1  Zeta_toxin       Zeta toxin
      0.011   15.5   0.0      0.015   15.0   0.0    1.3  1  AAA_30           AAA domain
      0.021   14.9   0.0      0.039   14.1   0.0    1.5  1  Torsin           Torsin
      0.025   14.9   0.0      0.044   14.0   0.0    1.5  1  AAA_22           AAA domain
      0.036   13.8   0.0      0.057   13.1   0.0    1.3  1  Thymidylate_kin  Thymidylate kinase
      0.046   14.1   0.1        0.1   13.0   0.0    1.7  1  AAA_17           AAA domain
      0.047   14.2   0.0      0.063   13.8   0.0    1.6  1  ABC_tran         ABC transporter
      0.048   13.4   0.0      0.093   12.5   0.0    1.4  1  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.052   13.3   0.0       0.09   12.5   0.0    1.4  1  PRK              Phosphoribulokinase / Uridine kinase family
       0.14   11.6   0.0        8.5    5.8   0.0    2.1  2  Ploopntkinase1   P-loop Nucleotide Kinase1
       0.22   11.9   0.0       0.38   11.2   0.0    1.4  1  RNA_helicase     RNA helicase
       0.24   10.5   0.0       0.32   10.1   0.0    1.2  1  G-alpha          G-protein alpha subunit


Domain annotation for each model (and alignments):
>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.2   0.0   1.5e-76   1.2e-73       1     154 [.      27     179 ..      27     182 .. 0.98

  Alignments for each domain:
  == domain 1  score: 246.2 bits;  conditional E-value: 1.5e-76
                 S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT-EEEEE----SHHHHHHHHHHHHCH CS
  APS_kinase   1 rgvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfseedRkenirrvaevaklladaglivlvafisPyreeReaarelleea 99 
                 rgvv+w+tGlsgsGKst+a ale++L+e+g+s+ylLdGdnvRhgL++dLgfs+edRkenirrv+eva+l++dagl+vl+afisP+r+eR+++re l e+
  CTQ29571.1  27 RGVVLWFTGLSGSGKSTVAGALEEALHERGVSTYLLDGDNVRHGLCSDLGFSDEDRKENIRRVGEVARLMVDAGLVVLTAFISPHRAERQMVRERLGEG 125
                 699**********************************************************************************************97 PP

                 TEEEEEEEE--HHHHHHHTTTSHHHHHHTTSSSSHTTTSS-----SS-SEEEETT CS
  APS_kinase 100 lkfievfvdtplevceerDpkglYkkareGeikeftGidspYeaPenpelvvdtd 154
                  +fievfvdtpl++ce+rDpkglYkkar+Ge+++ftGids YeaPe++e+++d +
  CTQ29571.1 126 -RFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPEKAEIHLDGE 179
                 .***************************************************965 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.3e-09   1.1e-06       1     115 [.      30     143 ..      30     169 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1.3e-09
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsr..rerarflkla 92 
                 ++++ Gl+GsGKst+a  l ++l+     ++ll+ d++r  l+ +   s++d+++   ++ +++ e+ar +  ag  +++   ++s+  +er+ +++ +
  CTQ29571.1  30 VLWFTGLSGSGKSTVAGALEEALHergvsTYLLDGDNVRHGLCSDLGFSDEDRKE---NI-RRVGEVARLMVDAG--LVVLTAFISPhrAERQMVRERL 122
                 7899***************99999999****************988888877444...44.45568886555555..4444556665114444444444 PP

      AAA_33  93 rrlgvpvrivvvetdeetlkeRl 115
                    g ++  v+v+t+ + +++R 
  CTQ29571.1 123 G-EG-RFIEVFVDTPLAICEARD 143
                 3.34.677799999999999985 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   3.4e-08   2.8e-05       3     104 ..      33     137 ..      31     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 3.4e-08
      AAA_18   3 ltGtpGvGKttlakeLskrl.gf....gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakdikk 96 
                  tG +G+GK+t+a +L++ l +         +d+++++ +++  + +   e +++++ ++ ++ +++  +       + +v+  +++ ++ e++  + +
  CTQ29571.1  33 FTGLSGSGKSTVAGALEEALhERgvstYLLDGDNVRHGLCSDLGFSD---EDRKENIRRVGEVARLMVDA-------GLVVLTAFISPHRAERQMVRER 121
                 79**************9998666889888888999999888888888...99999999999999999996.......7789999999999998876666 PP

      AAA_18  97 ........vvLtaspe 104
                         v+++++  
  CTQ29571.1 122 lgegrfieVFVDTPLA 137
                 7777777666666655 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.6e-07   0.00029       6      58 ..      33      88 ..      29     113 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.6e-07
                EE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH....TTSSS--GGGHHHHHH CS
       KTI12  6 ltGlPssGKstrakeLakaleeekrsvvviddeslg...iekdsykdsakekalRs 58
                +tGl  sGKst+a  L++al+e++ s +++d + ++   ++   + d+ + +++R 
  CTQ29571.1 33 FTGLSGSGKSTVAGALEEALHERGVSTYLLDGDNVRhglCSDLGFSDEDRKENIRR 88
                8******************************9999876444444777777777775 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     1e-06   0.00082       6     100 ..      35     121 ..      30     142 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1e-06
                 SSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH.HTTEB-HHHHCCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-TTCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   6 tkGGvGKTtlaanLaralarrglrVllvDaDpqannlai.leglendiepdlkrllellealgkkkalllkiagvvlnrvdgeneetllkealeel 100
                 + +G+GK+t+a +L  al +rg  + l+D D+ +  l + l  + +d+++++ r++e+++ ++           vvl+ + ++  +++++++++e+
  CTQ29571.1  35 GLSGSGKSTVAGALEEALHERGVSTYLLDGDNVRHGLCSdLGFSDEDRKENIRRVGEVARLMVDA-------GLVVLTAFISP--HRAERQMVRER 121
                 569****************************9977776655556666666888877777666654.......67788888888..66677766665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.4   1.3e-06    0.0011      20      63 ..      24      69 ..      17     198 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.3e-06
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellralekdggif..lrgkcdql 63
                + +r+ ++ ++G sG+GKs+++ +l +al ++g+ +  l g+++++
  CTQ29571.1 24 HGHRGVVLWFTGLSGSGKSTVAGALEEALHERGVSTylLDGDNVRH 69
                456668899***********************74443466666665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   8.6e-06     0.007      21      45 ..      26      51 ..      10      60 .. 0.77
   2 ?   -3.3   0.2       9.7   7.9e+03      38      47 ..      96     105 ..      96     106 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.6e-06
      AAA_29 21 lkg.atlltGpsGsGKSTllDAiqal 45
                 +g +  +tG sGsGKST+  A+   
  CTQ29571.1 26 HRGvVLWFTGLSGSGKSTVAGALEEA 51
                3676888***********98887655 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.7
      AAA_29  38 llDAiqalLv 47 
                 ++DA  ++L+
  CTQ29571.1  96 MVDAGLVVLT 105
                 6899999998 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   8.8e-06    0.0072       3      45 ..      30      72 ..      28      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.8e-06
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHH CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAv 45
                v+ + Gl G+GK t ++ L + l+++g ++ l   D  R + +
  CTQ29571.1 30 VLWFTGLSGSGKSTVAGALEEALHERGVSTYLLDGDNVRHGLC 72
                67899**********************************9865 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     1e-05    0.0085       9      57 ..      33      81 ..      26     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1e-05
        ParA  9 lSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeek 57
                  g  G GKStva  l  aL+++g+++ llD D + + + + lg ++e+
  CTQ29571.1 33 FTGLSGSGKSTVAGALEEALHERGVSTYLLDGDNVRHGLCSDLGFSDED 81
                567789***************************8777777777776654 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-05    0.0089      25      59 ..      24      58 ..       6      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
                G-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT-- CS
        MeaB 25 kaGraqvvGltGvPGaGkstlvealglelrrrGkr 59
                +  r  v+ +tG+ G+Gkst+  al + l +rG  
  CTQ29571.1 24 HGHRGVVLWFTGLSGSGKSTVAGALEEALHERGVS 58
                445778999***********************965 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     2e-05     0.017       9      60 ..      20      73 ..      14     106 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2e-05
  Zeta_toxin  9 k.ypsqerPklillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelhPe 60
                +  + + r +++   G +G+GKs++a +l+++l+ r+ +   ld+D++R     
  CTQ29571.1 20 ReQHHGHRGVVLWFTGLSGSGKSTVAGALEEALHeRGVSTYLLDGDNVRHGLCS 73
                445677888899999******************967778889999*99976555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.8e-05     0.015      14      49 ..      24      59 ..      15      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.8e-05
      AAA_30 14 ltsgdrvavltGpAGtGKttalkalreaweaaggrv 49
                ++++  v   tG  G+GK+t+ +al+ea++++g + 
  CTQ29571.1 24 HGHRGVVLWFTGLSGSGKSTVAGALEEALHERGVST 59
                4555678899********************999655 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.7e-05     0.039      46      84 ..      21      59 ..       7      85 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.7e-05
                T-SS-SS-EEEEEEE-TTSSHHHHHHHHHHHHSTTGGGS CS
      Torsin 46 enekpkkpLvlsfhGwtGtGknfvaeiiaenlyrdGlrs 84
                e+++ ++ +vl f G +G+Gk+ va  + e+l+++G+ +
  CTQ29571.1 21 EQHHGHRGVVLWFTGLSGSGKSTVAGALEEALHERGVST 59
                456788999**************************9864 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.4e-05     0.044       8      50 ..      31      65 ..      23     115 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.4e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpss 50
                l  tG sG+GK+t++  l e l+e+        +v ++ l ++
  CTQ29571.1 31 LWFTGLSGSGKSTVAGALEEALHER--------GVSTYLLDGD 65
                5579******************854........4444444444 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     7e-05     0.057       2      28 ..      34      60 ..      33      66 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7e-05
                     EESTTSSHHHHHHHHHHHHHHTTE.EE CS
  Thymidylate_kin  2 EGlDGaGKttqaellkerlkeegikvv 28
                      Gl G+GK+t+a +l e+l+e+g +++
       CTQ29571.1 34 TGLSGSGKSTVAGALEEALHERGVSTY 60
                     599********************8844 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00012       0.1       1      51 [.      34      91 ..      34     106 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00012
                EE-TTSSHHHHHHHHHHHHTEEEEEH....HHHHH.HHHHTTTS..HSSHHHHCTSHH CS
      AAA_17  1 lGgPGsGKgtqceklvekygfthlsa....Gdllr.eeakrggl..akardemrklpl 51
                +G+ GsGK+t++  l e ++   +s+    Gd +r   +++ g   ++ ++++r++ +
  CTQ29571.1 34 TGLSGSGKSTVAGALEEALHERGVSTylldGDNVRhGLCSDLGFsdEDRKENIRRVGE 91
                69**************999554444444459999955666667642333455555554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.7e-05     0.063      10      51 ..      27      69 ..      23     189 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.7e-05
                TTSEEEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGG CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
    ABC_tran 10 egekvaivGenGaGKStLlkllagllkp.teGeilldgkdlke 51
                +g ++ ++G +G+GKSt++ +l + l+     + lldg+++++
  CTQ29571.1 27 RGVVLWFTGLSGSGKSTVAGALEEALHErGVSTYLLDGDNVRH 69
                57788899*************9988775233344566666666 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011     0.093       2      29 ..      34      61 ..      33      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
  ATP_bind_1  2 vGpaGsGKttfvgalseilelrgrsvav 29
                +G  GsGK+t  gal e l++rg s ++
  CTQ29571.1 34 TGLSGSGKSTVAGALEEALHERGVSTYL 61
                799*******************998876 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011      0.09       5      36 ..      34      65 ..      30      87 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
         PRK  5 agsSGaGkttvarklekifgrekvkaaeiegd 36
                +g SG+Gk+tva +le+++ + +v +   +gd
  CTQ29571.1 34 TGLSGSGKSTVAGALEEALHERGVSTYLLDGD 65
                899*****************999986655554 PP

>> Ploopntkinase1  P-loop Nucleotide Kinase1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0      0.01       8.5      10      40 ..      21      51 ..      12      64 .. 0.79
   2 ?    3.6   0.0      0.05        41     127     143 ..     126     142 ..     114     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.01
  Ploopntkinase1 10 egeypargelyyvkgsngsgkstvpsylaek 40
                    e ++  rg + +  g  gsgkstv   l e 
      CTQ29571.1 21 EQHHGHRGVVLWFTGLSGSGKSTVAGALEEA 51
                    455667999999************9887765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.05
  Ploopntkinase1 127 rlvvlfldtpletclsr 143
                     r++ +f+dtpl++c +r
      CTQ29571.1 126 RFIEVFVDTPLAICEAR 142
                     6789**********988 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00046      0.38       1      24 [.      31      54 ..      31      73 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00046
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallk 24
                  +w++G sg GKSt+a  L +al +
    CTQ29571.1 31 LWFTGLSGSGKSTVAGALEEALHE 54
                  6****************9888874 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0004      0.32      13      52 ..      18      58 ..      10      93 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0004
                XXXXXXXE..EEEEEEEESTTSSHHHHHHHHH.HHCS---- CS
     G-alpha 13 aerkarkkkrevkllllGqseSGKsTilkqlk.llykkgfs 52
                ++r++ +  r v l + G s+SGKsT+   l+  l++ g+s
  CTQ29571.1 18 QQREQHHGHRGVVLWFTGLSGSGKSTVAGALEeALHERGVS 58
                334444447799***************99999888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 1608.42
//
Query:       CTQ29572.1  [L=475]
Description: sulfate adenylyltransferase, subunit 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-44  151.6   0.0    2.4e-44  151.2   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    5.2e-07   29.7   0.0    9.4e-06   25.7   0.0    2.4  1  MMR_HSR1     50S ribosome-binding GTPase
    9.6e-06   25.9   0.1      2e-05   24.9   0.1    1.6  1  GTP_EFTU_D2  Elongation factor Tu domain 2
  ------ inclusion threshold ------
      0.014   14.8   0.0       0.84    9.0   0.0    2.3  2  SRPRB        Signal recognition particle receptor beta subuni
      0.042   13.4   0.0       0.24   10.9   0.0    2.2  2  FeoB_N       Ferrous iron transport protein B
      0.042   14.1   0.0         14    5.9   0.0    2.3  2  Roc          Ras of Complex, Roc, domain of DAPkinase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2   0.0     8e-48   2.4e-44       3     188 ..      27     232 ..      25     283 .. 0.91

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 8e-48
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH...HHHST..............HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGH CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgeka...eeerv..............lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFs 84 
                 ++ + ++g vD GK+TL++rLl++t +i +++      ++                 +D l++Ere+giTi++a  +++  t+k+++ + DtPGH++++
  CTQ29572.1  27 LLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSlhnDS--KrhgtqgekldlallVDGLQAEREQGITIDVAYRYFS--TEKRKFIIADTPGHEQYT 121
                 67899*************************9988875422..23588999*****************************..****************** PP

                 HHHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTE.EEEEEESCGST...HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTB CS
    GTP_EFTU  85 kevirglrvlDgavlvvdaveGvepqteevlrlalkegvp.iivfiNKmDrl...kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkge 179
                 +++ +g++++D+a+l++da++Gv  qt+++  +   +g++ ++v+iNKmD +   +a+++ei e++  ++       e+ + +   ++ +v+ Sal+g+
  CTQ29572.1 122 RNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKhLVVAINKMDLVefsEARFNEIREDYL-TF------AEQLPGN--LDIRFVPLSALEGD 211
                 ******************************************************99*********99.78......5666655..48************ PP

                 THH............HHHHHH CS
    GTP_EFTU 180 gvk............tlleal 188
                 +v             tlle+l
  CTQ29572.1 212 NVAsqsanmpwysgpTLLEVL 232
                 998777777777777555544 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   3.1e-09   9.4e-06       5      93 ..      33     148 ..      29     169 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 3.1e-09
                 EESTTSSHHHHHHHHHT.................................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHH CS
    MMR_HSR1   5 vGrpNvGKStLinaltg.................................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaf 70 
                  G    GKStLi +l+                                  +  ++++++g T+d+ ++ +++++++++++DtpG  e      + ++++
  CTQ29572.1  33 CGSVDDGKSTLIGRLLHdtrqiyedqlsslhndskrhgtqgekldlallvDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPG-HE------QYTRNM 124
                 5778889*******99444445555555555556666666677766555446799999************9999**********.44......566666 PP

                 HHHHC.TSEEEEEEETTTTCSHHH CS
    MMR_HSR1  71 lalee.adlillvvdaseeklkpl 93 
                 +   + +dl++l++da+++ l++ 
  CTQ29572.1 125 ATGAStCDLAILLIDARKGVLDQT 148
                 6544449********995433333 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   6.8e-09     2e-05       6      73 ..     265     324 ..     263     325 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 6.8e-09
                  EEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   6 grvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  g+v sGt+++G+++++l+  ++ +   + + ++ tf +d++ea ag+++ + ++  +  d i +Gd l
   CTQ29572.1 265 GTVASGTVQVGQRLKVLP--SGVE---SSVARIVTFDGDLQEAAAGEAITLVLK--DEID-ISRGDLL 324
                  8899************55..5456...89******************9998887..3445.7777765 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.014        43       5      37 ..      29      64 ..      25      83 .. 0.66
   2 ?    9.0   0.0   0.00028      0.84      34      69 ..      92     127 ..      73     139 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.014
                EEEEE-STTSSHHHHHHHHHHS..S---B---S.S- CS
       SRPRB  5 avllvGlsdsGKTslftrLttd..svkktvtSq.es 37
                ++l  G  d GK +l+ rL+ d  ++ + + S  ++
  CTQ29572.1 29 RFLTCGSVDDGKSTLIGRLLHDtrQIYEDQLSSlHN 64
                68899***************9955334444444133 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00028
                 -SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHH CS
       SRPRB  34 SqessaalkvksekgskltliDfPGheklrqkllek 69 
                  +   +a+++ s+++ k+ ++D PGhe+   ++ + 
  CTQ29572.1  92 GITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATG 127
                 55667999********************98888765 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.1   3.2e+03       5      22 ..      32      49 ..      29      54 .. 0.76
   2 ?   10.9   0.0     8e-05      0.24      32     149 ..      92     213 ..      90     219 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
                EEESTTSSHHHHHHHHHT CS
      FeoB_N  5 lvGnpnvGkttlfnaltg 22
                ++G  + Gk+tl+ +l  
  CTQ29572.1 32 TCGSVDDGKSTLIGRLLH 49
                5788889*****998865 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 8e-05
                 TSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH.CTSSSEEEEEEEGGG....HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE CS
      FeoB_N  32 GvtvekkegklklkgkeveivDlPGiYslsayseeekvardfll.eeepdvvvnvvdatn....lernLyLtlqllelgvpvvlalnmideaekkgiei 125
                 G+t++ +  +++++++++ i D PG          e+ +r++ +  ++ d+ + ++da +      r   ++  ll ++ ++v+a+n++d +e ++ + 
  CTQ29572.1  92 GITIDVAYRYFSTEKRKFIIADTPGH---------EQYTRNMATgASTCDLAILLIDARKgvldQTRRHSFISTLLGIK-HLVVAINKMDLVEFSEARF 180
                 99***********************6.........55555555434567777777777643322456777888888875.6899******998766655 PP

                 -H.........HHHHHHHTS-EEEEBTTTTBTH CS
      FeoB_N 126 dl.........kkLsekLgvpvvktsakkkegi 149
                 ++         ++L  +L++  v++sa +++++
  CTQ29572.1 181 NEiredyltfaEQLPGNLDIRFVPLSALEGDNV 213
                 431112222225666677777777777777666 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0046        14       3      36 ..      31      64 ..      29      80 .. 0.77
   2 ?    5.9   0.0    0.0047        14      53     119 ..     104     171 ..      78     172 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0046
                EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEE CS
         Roc  3 vlvGdsgvGKtsllkrfvedkfsekekstigvdf 36
                + +G    GK++l+ r+++d+ +  e++  ++  
  CTQ29572.1 31 LTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHN 64
                67899999************99877777665555 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0047
                 TTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHH.HCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  53 vkkvklniWDtaGqerfrslhplylreaalailvydsrss.enlkeWlkelkkvagkspvilvgnkiD 119
                 ++k k+ i Dt G+e++   +    +  +lail++d+r+   +  +  + +++  g + +++ +nk+D
  CTQ29572.1 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGvLDQTRRHSFISTLLGIKHLVVAINKMD 171
                 234579999***************************88752455566777788888888888899988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3678.62
//
Query:       CTQ29573.1  [L=302]
Description: sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-66  222.9   0.0    3.2e-66  222.7   0.0    1.1  1  PAPS_reduct  Phosphoadenosine phosphosulfate reductase family


Domain annotation for each model (and alignments):
>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.7   0.0   1.8e-70   3.2e-66       1     174 []      29     257 ..      29     257 .. 0.99

  Alignments for each domain:
  == domain 1  score: 222.7 bits;  conditional E-value: 1.8e-70
                  CEEEE--SSCTCHHHHHHHHHHCTTH....EEEEEE-STB-HHHHHHHHHHHHHTT-EEEEEE-SCHHHHHHHHHH-S-THHHCHHHHHHTHHHHHHH CS
  PAPS_reduct   1 elvvsvsgGkdslVllhLalkafkpv....pvvfvdtghefpetiefvdeleeryglrlkvyepeeevaekinaekhgsslyeeaaeriaKveplkka 94 
                  ++v+ +s+Gkds+V+lhLa+kaf+p+    p+++vdtg++f+e++ef+d++++ yg++l v++++e+va +in++ hgs+++++    i+K+e lk+a
   CTQ29573.1  29 NPVMMYSIGKDSSVMLHLARKAFYPGtlpfPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTD----IMKTEGLKQA 122
                  689**********************77777******************************************************....********** PP

                  HHCTTECEEE----CCCTTTTTTSSSEEECTTT-S......................CEEE-CCCT--HHHHHHHHHHCT--B-CCCCTT........ CS
  PAPS_reduct  95 LekldedalltGaRrdesksraklpiveidedfek......................slrvfPllnWteedvwqyilrenipynpLydqg........ 162
                  L+k+++da+++GaRrde+ksrak++i++++++f++                      s+rvfPl+nWte d+wqyi+ eni+++pLy ++        
   CTQ29573.1 123 LNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRwdpknqrpelwhnyngqinkgeSIRVFPLSNWTELDIWQYIYLENIEIVPLYLAAerpvlerd 220
                  ************************************************************************************************** PP

                  .........................-SS--BCTTB-S CS
  PAPS_reduct 163 .........................frsiGcvpctga 174
                                           fr++Gc+p+tga
   CTQ29573.1 221 gmlmmidddridlqpgeviekrmvrFRTLGCWPLTGA 257
                  **********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2376.85
//
Query:       CTQ29574.1  [L=471]
Description: fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase; uroporphyrinogen methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-52  177.0   2.0    9.8e-52  176.0   2.0    1.5  1  TP_methylase    Tetrapyrrole (Corrin/Porphyrin) Methylases
    9.7e-29   99.9   0.1    2.5e-28   98.6   0.1    1.7  1  NAD_binding_7   Putative NAD(P)-binding
    3.9e-20   71.3   2.6    1.7e-19   69.3   2.6    2.2  1  CysG_dimeriser  Sirohaem synthase dimerisation region
    8.6e-09   34.7   0.4    1.8e-08   33.6   0.4    1.6  1  Sirohm_synth_M  Sirohaem biosynthesis protein central
      0.001   19.1   0.4     0.0046   17.0   0.0    2.2  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.032   13.5   0.1       0.12   11.7   0.0    2.0  2  LSDAT_prok      SLOG in TRPM, prokaryote


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.0   2.0   3.3e-55   9.8e-52       2     212 ..     217     426 ..     216     427 .. 0.90

  Alignments for each domain:
  == domain 1  score: 176.0 bits;  conditional E-value: 3.3e-55
  TP_methylase   2 lylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeeleleapmgkekepleeayeeiaealaealragkdVvllvsGDPlvygtgse 98 
                   ++lVG+GpGd+ llT+r+l+a+++advv+ d  ++++ +l+l+++++el    gk++ ++   + e ++ l+ea++agk+Vv+l++GDP+++g+g+e
    CTQ29574.1 217 IILVGAGPGDAGLLTLRGLQAIQQADVVFHDH-LVTQPVLELVRRDAEL-ICVGKRAGEHSVPQHETNQLLVEAAKAGKTVVRLKGGDPFIFGRGAE 311
                   89***************************999.**********998522.2333334566677999******************************* PP

  TP_methylase  99 lvealrareagieveviPGvsslqaaaarlgiplteggevlsvl......lpglakeeereleallangdtlvllkaprklaelaelLkea.lyddt 188
                   +++a+++  agi+++v+PGv+++  a a++giplt+++ ++s +      +p+   +++ +++ l++ ++tl++++++ k+ae+ ++L+++ ++  +
    CTQ29574.1 312 ELQAAAE--AGIPFQVVPGVTAAAGATAYAGIPLTHRDYAQSAVfvtghyKPD---SAPFDWSLLAKSQQTLAIYMGTMKAAEISAQLIAHgRDS-D 402
                   *******..*****************************999999998774333...4688888888899**********************6666.5 PP

  TP_methylase 189 tpvavveragtedervvrgtleel 212
                   tpvav++r++++d+++++gtl++l
    CTQ29574.1 403 TPVAVISRGTRDDQQTITGTLQQL 426
                   5********************988 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.1   8.4e-32   2.5e-28       1     104 []       6     115 ..       6     115 .. 0.90

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 8.4e-32
  NAD_binding_7   1 lfldlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeele.....elvklaeeele.kdlegadlviaatddrelneriaeaakarrilvn 90 
                    lf +lk++ vlv+GgGe+A+rk++ ll+a+a+v+vva++++++l      + ++++ +e++ + +++++lviaat+d++ln+r+ +aa ar  lvn
     CTQ29574.1   6 LFAELKQRPVLVIGGGEIAERKIKFLLRAQAQVQVVAETLSPALAdlaarQALSWRATEFSdSLVDDVFLVIAATEDEALNQRVFAAANARYRLVN 101
                    7899***********************************755555555556777899999626699****************************** PP

  NAD_binding_7  91 vadkpelcdfifpa 104
                    v+d+++lc+f+fp+
     CTQ29574.1 102 VVDNQALCSFVFPS 115
                    *************7 PP

>> CysG_dimeriser  Sirohaem synthase dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   2.6   5.7e-23   1.7e-19       1      58 []     150     207 ..     150     207 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 5.7e-23
                     THHHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHT-HHHHHHHHTT-HHHHHHHHHHHH CS
  CysG_dimeriser   1 slGrLAelagrlRdrVkarlpdvaaRRrFWerffdgpvaelvlaGdeeeAealleqaL 58 
                     +lGrLAe a  +R++ k rl++++aRRrFWer+f+g++a+l+ aG+ +eAe++l+++L
      CTQ29574.1 150 NLGRLAESASYWRNHLKTRLTTTEARRRFWERVFTGRFASLMVAGNSAEAEKALQDEL 207
                     69*****************************************************987 PP

>> Sirohm_synth_M  Sirohaem biosynthesis protein central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.4   6.1e-12   1.8e-08       1      27 [.     119     145 ..     119     146 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 6.1e-12
  Sirohm_synth_M   1 rGpLQIaiSTnGksPrLAaliRreier 27 
                     r pL +aiS+ Gk+P+L++++R++ie+
      CTQ29574.1 119 RSPLLVAISSSGKAPVLSRILREKIEA 145
                     679***********************8 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.6e-06    0.0046       7      83 ..       7      80 ..       4     103 .. 0.72
   2 ?   -2.1   0.0       1.2   3.6e+03      71      83 ..     236     248 ..     219     256 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.6e-06
                  HS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHH.HHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-S CS
  Shikimate_DH  7 leslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlera.kelaeelkgeeiealkleelkellaeadvvisat 83
                  + +lk++ vl+iG Ge+ae+ +k Ll+++++ v v+  tl+ a ++la +  + + +a+++++  +l++++ +vi+at
    CTQ29574.1  7 FAELKQRPVLVIGGGEIAERKIKFLLRAQAQ-VQVVAETLSPAlADLAARQ-ALSWRATEFSD--SLVDDVFLVIAAT 80
                  6789*************************99.7777666655415566555.23244444443..4455555566555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                   HHHHT-SEEEE-S CS
  Shikimate_DH  71 ellaeadvvisat 83 
                   +++++advv+   
    CTQ29574.1 236 QAIQQADVVFHDH 248
                   4899999999755 PP

>> LSDAT_prok  SLOG in TRPM, prokaryote
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.9e-05      0.12     120     158 ..       8      46 ..       3      87 .. 0.78
   2 ?   -2.8   0.0         1     3e+03     138     161 ..     311     334 ..     283     352 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.9e-05
  LSDAT_prok 120 aekkpsvtvlvnGgeitlkdiresvkagrpilvvaGsgr 158
                 ae k++ +++++Ggei+ + i+  ++a+ ++ vva +  
  CTQ29574.1   8 AELKQRPVLVIGGGEIAERKIKFLLRAQAQVQVVAETLS 46 
                 66678889***************************9854 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1
  LSDAT_prok 138 kdiresvkagrpilvvaGsgrlad 161
                 ++++++ +ag p  vv G   +a 
  CTQ29574.1 311 EELQAAAEAGIPFQVVPGVTAAAG 334
                 677888888888888888666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3334.74
//
Query:       CTQ29575.1  [L=348]
Description: aminopeptidase in alkaline phosphatase isozyme conversion [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-32  110.4   0.0    1.4e-31  109.7   0.0    1.3  1  Peptidase_M28  Peptidase family M28
    2.5e-05   24.1   0.0    4.6e-05   23.2   0.0    1.6  2  Peptidase_M20  Peptidase family M20/M25/M40
    0.00022   20.4   0.1     0.0049   15.9   0.0    2.1  2  Peptidase_M42  M42 glutamyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   0.0   2.3e-35   1.4e-31       2     192 ..     100     325 ..      99     331 .. 0.82

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 2.3e-35
                    EEEEESTTCESEEEEEEEE--B-TTT..TCC........T---TTTTHHHHHHHHHHHHHCHHGGCCS.SEEEEEEEESSCSGSSHHHHHHHH..H CS
  Peptidase_M28   2 viatlegkatdevlllgAHyDsvgvg..rgp........ifvGAdDnAsgvaalLelarvlaasgsrp.krgvrflffdaEEagllGSkafak..a 84 
                    via +egk   ++++++AH+D+++ +  + +        +++G+dDnA+g ++lLela+ l++    p ++g+rf+++++EE+g lG++++ +  +
     CTQ29575.1 100 VIAAHEGKV-RQQIIIMAHLDTYAPQsdK-DvennlgglTLQGIDDNAMGLGVLLELAEHLKN---VPtRYGIRFIATSGEEEGRLGAQNLLQrmS 190
                    99*******.99************98861.2455678899**********************9...4549**********************8766 PP

                    HCCCTTEEEEEEECS-SSSS--EEEHHHHHHCHHHHHHHHHHHHHTT-TTS....C....CEEEEESSTT-STTHHHHTTT--EEEE......... CS
  Peptidase_M28  85 kpelkkiaavlnlDmvgsggkellfesgdkssselekelkalakpvgraaa....e....dpfdersgrgrsDhspflkagvpvldl......... 163
                    + e+k++ +v+nlD +  g+k ++ +sg ++ ++++k ++++a +++r++     +    +p  ++++  ++D+s+f +ag+pvl++         
     CTQ29575.1 191 EAEKKNTLLVINLDNLVVGDKLYF-NSGRSTPASVRKLTRDRALAIARSKGiaayTnpglNPAYPKGTSCCNDASVFDNAGIPVLSVeatnwslgk 285
                    66**************99999888.8888888888888885555554443211112001345555557777************************* PP

                    ..........CTSSS-TTTTSTT.SSGGGB-HHHHHHHHH CS
  Peptidase_M28 164 ..........aetgfpevyHtpr.Dtldnidkdtlariae 192
                              a+ + ++ +H  + D+ ++id +  +ri++
     CTQ29575.1 286 kdgyqqrsksASFPQGTSWHDVQlDNQQYIDHALPGRIEH 325
                    *********999999****8754499999*9999888876 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       0.8   4.8e+03      39      67 ..      16      44 ..      14      47 .. 0.78
   2 !   23.2   0.0   7.7e-09   4.6e-05       2      94 ..     114     198 ..     113     331 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.8
                   HHHHHHHHHHHHHHHHHTTT-SSEEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 39 kggvlaalealralkdegikpkgtivllf 67
                   +g v+aa+ a+ al d+   + + i  +f
     CTQ29575.1 16 TGFVFAAAPAFSALGDAASSQARHIATVF 44
                   78889999999999888888777777666 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 7.7e-09
                    EEEES-BSS.TTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHHTTTCESEE CS
                    xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   2 lgsHlDvVp.eeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegleerekvdav 94 
                    +++HlD+   + ++ +       +++ G l   G dd+  g+  +le++++lk     +++ i+++++  EE gr Ga++ll+ + e+ek   +
     CTQ29575.1 114 IMAHLDTYApQSDK-D------VENNLGGLTLQGIDDNAMGLGVLLELAEHLKNVP--TRYGIRFIATSGEEEGRLGAQNLLQRMSEAEKKNTL 198
                    79999999944444.2......2333344555677999999999999999999986..577***********999********65544444333 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.012        69       3      24 ..     100     120 ..      97     122 .. 0.80
   2 !   15.9   0.0   8.2e-07    0.0049     134     181 ..     143     190 ..     135     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.012
                    EEEEEESSTTSSEEEEEEE--B CS
  Peptidase_M42   3 liakkkgkekepkvmiaAHmDe 24 
                    +ia  +g + +++++i+AH+D+
     CTQ29575.1 100 VIAAHEG-KVRQQIIIMAHLDT 120
                    6677777.6789*********7 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 8.2e-07
                    HHHHHHHHHHHHHHHHCTSS-SSEEEEEEESTCTTTSHHHHHHHHHH- CS
  Peptidase_M42 134 DdragvavllellkelkeeeleatvylvatvqEEvGlrGaktsaekik 181
                    D+ +g+ vllel+++lk+  + + + ++at  EE G  Ga+++ ++++
     CTQ29575.1 143 DNAMGLGVLLELAEHLKNVPTRYGIRFIATSGEEEGRLGAQNLLQRMS 190
                    8999*************************************9987754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2456.80
//
Query:       CTQ29576.1  [L=244]
Description: 3'-phosphoadenosine 5'-phosphosulfate reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-52  176.3   0.0    6.7e-52  176.0   0.0    1.1  1  PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
  ------ inclusion threshold ------
      0.094   12.3   0.0       0.15   11.7   0.0    1.4  1  DDE_Tnp_1    Transposase DDE domain
       0.15   12.1   0.2       0.37   10.8   0.2    1.7  1  LisH         LisH
       0.17   11.4   0.0       0.21   11.1   0.0    1.2  1  YceG         YceG-like family


Domain annotation for each model (and alignments):
>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.0   0.0   1.5e-55   6.7e-52       2     173 ..      48     219 ..      47     220 .. 0.98

  Alignments for each domain:
  == domain 1  score: 176.0 bits;  conditional E-value: 1.5e-55
                  EEEE--SSCTCHHHHHHHHHHCTTHEEEEEE-STB-HHHHHHHHHHHHHTT-EEEEEE-SCHHHHHHHHHH-S-THHHC......HHHHHHTHHHHHH CS
  PAPS_reduct   2 lvvsvsgGkdslVllhLalkafkpvpvvfvdtghefpetiefvdeleeryglrlkvyepeeevaekinaekhgsslyee......aaeriaKveplkk 93 
                  +v+s s+G++++V lhL+ ++ +++pv+  dtg+ fpet++f+del+++++l+lkvy+  e+ a+++++++   +l+e+      ++++i Kvep+++
   CTQ29576.1  48 YVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAAESAAWQEARYG---KLWEQgvegieKYNEINKVEPMNR 142
                  799********************************************************************...9*********************** PP

                  HHHCTTECEEE----CCCTTTTTTSSSEEECTTT-SCEEE-CCCT--HHHHHHHHHHCT--B-CCCCTT-SS--BCTTB- CS
  PAPS_reduct  94 aLekldedalltGaRrdesksraklpiveidedfekslrvfPllnWteedvwqyilrenipynpLydqgfrsiGcvpctg 173
                  aL++l+++++++G+Rr++s sra+lp++ +++    +++v+P+++W+++ v+qy+++++++y+pL+dqg+ s+G++++t+
   CTQ29576.1 143 ALKELNAQTWFAGLRREQSGSRATLPVLAVQRG---VFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTR 219
                  *********************************...99***************************************997 PP

>> DDE_Tnp_1  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.3e-05      0.15      67     143 ..      63     153 ..      56     221 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.3e-05
   DDE_Tnp_1  67 qlldelrprkgklvlaDaGYasaelldtleekgvdyiirlkkntklyrk...................gaeskrrgrlrkhdrnkiltksqkrrnk 143
                  l++++rp + +++l+D GY  +e++++++e       +lk n k+yr                    +  +k++++ +   +n++l++ + ++++
  CTQ29576.1  63 HLVNQIRP-DIPVILTDTGYLFPETYQFIDEL----TDKLKLNLKVYRAaesaawqearygklweqgvEGIEKYNEINKVEPMNRALKELNAQTWF 153
                 58999999.*********************33....335799999999999888888777777777664555588888888888888888888888 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   8.2e-05      0.37       4      17 ..     187     200 ..     187     201 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.2e-05
                 HHHHHHHHHHCT-H CS
        LisH   4 NrLIydYLvkeGye 17 
                 Nr +y YL+k+G++
  CTQ29576.1 187 NRTVYQYLQKHGLK 200
                 888*********97 PP

>> YceG  YceG-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.7e-05      0.21     110     140 ..      72     109 ..      10     143 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.7e-05
                 T......TT-S-SCEE--.SSS--HHHHHHHHHHHHHH CS
        YceG 110 l......eGylfPdtYef.kkgtsaeeilkrmlaefek 140
                 +       GylfP+tY+f ++ t++ ++  +++++ e+
  CTQ29576.1  72 IpviltdTGYLFPETYQFiDELTDKLKLNLKVYRAAES 109
                 14445558**********65556666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1993.64
//
Query:       CTQ29577.1  [L=570]
Description: sulfite reductase, beta subunit, NAD(P)-binding, heme-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-52  176.0   0.1    1.6e-47  161.0   0.1    2.3  2  NIR_SIR       Nitrite and sulphite reductase 4Fe-4S domain
    4.2e-29  100.2   0.1    6.2e-13   48.4   0.0    3.2  3  NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half 
  ------ inclusion threshold ------
       0.18   11.8   0.4        1.8    8.7   0.0    2.6  3  RHH_1         Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.0   0.1   2.7e-51   1.6e-47       2     159 .]     173     331 ..     172     331 .. 0.98
   2 !   12.8   0.0     1e-05      0.06       7     135 ..     430     548 ..     425     558 .. 0.77

  Alignments for each domain:
  == domain 1  score: 161.0 bits;  conditional E-value: 2.7e-51
                 SSSCCCCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   2 ganlrnvtlcpgaglceeallDttelakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakktsa 100
                 +a+ ++ +l+p +++++e++lD++++a++ e   ep++g+tylPrKfK+ v ++p+n+++++anD+++v++ +++k +gfn+lvGGgl+++hg+kkt+a
  CTQ29577.1 173 WAKKISEHLLPRTRAYAEIWLDQKKVATTDE---EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYA 268
                 68999***********************999...***************************************************************** PP

                 EE....EEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHHHHHHHHHHHHHCCTCGG CS
                 xx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR 101 rl....gfvpeeevlevveaivevyrdhgdrknrkkeRlkylverlGvekFrekveeelgkkl 159
                 r+    g++p e++l+v+ea+v+++rd+g+r++rk+++ ky++er+Gve F+++ve + g+k+
  CTQ29577.1 269 RTasefGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKF 331
                 **********************************************************99876 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1e-05
                 CCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSS.SS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   7 nvtlcpgaglceeallDttelakaiedelepeygetyl.PrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakktsarlgf 104
                 n ++c+ + +c+ a+ +++ +   + d++e+ ++++ + + +  + v+gcpn c+++    +glvg     ++  +n+ +GG+   t+  ++ ++    
  CTQ29577.1 430 NSMACVSFPTCPLAMAEAERFLPSFIDKVEGVMSKHGVsDEHIVTRVTGCPNGCGRAMLAEVGLVGKAP--GR--YNLHIGGNRNGTRI-PRMYR--EN 521
                 6788999999999999999999999999999998887635789999*************9999998544..44..99*****9766554.44444..45 PP

                 EEGGGHHHHHHHHHHHHHHHS-CSSGGG-SH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR 105 vpeeevlevveaivevyrdhgdrknrkkeRl 135
                 ++e e+l+ ++++v  ++    ++ ++ e +
  CTQ29577.1 522 ITESEILDSLDELVGRWA----KEREAGEGF 548
                 677779999999999999....555555555 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   2.4e-16   1.4e-12      11      67 ..      81     138 ..      73     140 .. 0.92
   2 !   48.4   0.0     1e-16   6.2e-13       5      67 ..     353     416 ..     350     418 .. 0.93
   3 ?    0.1   0.0      0.12   7.3e+02      26      50 ..     528     558 ..     522     566 .. 0.71

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 2.4e-16
  NIR_SIR_ferr  11 mvrlrvpnGritaeqlraladiaekygs.geirlTtrQnlqlhgvpeedleeileeLa 67 
                    +r+r+p+G it+ q++a+ ++a +  + g irlT rQ++q+hg+ +++++++ + L+
    CTQ29577.1  81 LLRCRLPGGVITTTQWKAIDKFAAENTIyGSIRLTNRQTFQFHGILKKNVKPVHQMLH 138
                   589********************9999669***********************99887 PP

  == domain 2  score: 48.4 bits;  conditional E-value: 1e-16
  NIR_SIR_ferr   5 dgkgyymvrlrvpnGri.tae...qlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLa 67 
                   d k  ++++l+++nGri +     ++++l +ia+ ++ ge+r+T++Qnl+++ vpe++ + i+++++
    CTQ29577.1 353 DDK--WHLTLFIENGRIlDYPgrpLKTGLLEIAKVHQ-GEFRITANQNLIVASVPEDQKARIEKLAR 416
                   557..9************999****************.***********************999876 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.12
  NIR_SIR_ferr  26 lraladia......ekygsgeirlTtrQnlq 50 
                   l+ l +++      ++ g+g  ++T r +++
    CTQ29577.1 528 LDSLDELVgrwakeREAGEGFGDFTVRAGII 558
                   5555555555556678999999*****9998 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.45   2.7e+03      14      26 ..     142     154 ..     141     156 .. 0.87
   2 ?    8.7   0.0   0.00029       1.8       5      22 ..     402     419 ..     399     422 .. 0.88
   3 ?   -0.9   0.1       0.3   1.8e+03       8      18 ..     525     535 ..     524     537 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.45
                 HHHHHHHHTSSHH CS
       RHH_1  14 LdelarrrgrSrS 26 
                 Ld+la + +++r 
  CTQ29577.1 142 LDALATANDMNRN 154
                 9**********97 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00029
                 EEEHHHHHHHHHHHHHHT CS
       RHH_1   5 rldeellerLdelarrrg 22 
                 +++e+ ++r+++lar+ g
  CTQ29577.1 402 SVPEDQKARIEKLARDHG 419
                 89*************987 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.3
                 HHHHHHHHHHH CS
       RHH_1   8 eellerLdela 18 
                 +e+l+ Ldel+
  CTQ29577.1 525 SEILDSLDELV 535
                 68999****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4467.66
//
Query:       CTQ29578.1  [L=599]
Description: sulfite reductase, alpha subunit, flavoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-32  113.2   0.2    2.7e-32  111.9   0.2    1.7  1  Flavodoxin_1   Flavodoxin
    1.7e-27   96.4   0.0    1.4e-25   90.2   0.0    2.3  1  FAD_binding_1  FAD binding domain
    7.4e-22   78.1   0.0    1.7e-21   76.9   0.0    1.6  1  NAD_binding_1  Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.2   4.6e-36   2.7e-32       2     141 ..      67     195 ..      66     200 .. 0.90

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 4.6e-36
                   EEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEECT CS
  Flavodoxin_1   2 lYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGds 98 
                   + +S+tGn++ +A++l+++l ++++n+++v++ dy+  +++i +e+ll+vvtsT g+G+ppe++    +++l  k    ++++l g  favfglGd+
    CTQ29578.1  67 ISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYK--FKQIAAEKLLVVVTSTQGEGEPPEEAV-ALHKFLFSK----KAPKLDGTAFAVFGLGDT 156
                   679*********************************..89*********************9999.777777777....799*************** PP

                   TSSSTTHHHHHHHHHHHHTTCEEESSSEEEETTSTHGHHHHHH CS
  Flavodoxin_1  99 ayenFcaagkkldekleelGaerllkllegdednqegqeeafr 141
                   +ye Fc+ gk +d+kl elGaerll  + +d +     ++a  
    CTQ29578.1 157 SYEFFCQSGKDFDNKLAELGAERLLDRVDADVEY----QAAAA 195
                   *************************966666644....44444 PP

>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.0   2.3e-29   1.4e-25       2     222 .]     230     424 ..     229     424 .. 0.86

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 2.3e-29
                    --BTTB-EEEEEEEEEE---.-SS--EEEEEEE-TTBT----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT..S--SSSSSEEH CS
  FAD_binding_1   2 pfdakkvflakvlknreLtkpesernvihveldisdsglkYetGdhlgvypsNneelVeellellgldpkadevvelkaldeesaekeprleptTl 97 
                    p  ++ + +a+++ n+++t  +se+ v h+e+d+ dsgl+Y++Gd+lgv+ +N+++lV+el+ell l+   de+v ++ +               l
     CTQ29578.1 230 PYTKEAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPQLVKELVELLWLKG--DEPVTVEGKT------------LPL 311
                    66788999*************************************************************..9***998776............568 PP

                    HHHHHHTB--SS---HHHHHHHGGG-SSHHHHHHHHHHHH-HHHHHTTTTT--HHHHHHHHHTT---TTS-HHHHHHHS-B---EEEEB-S-TTTT CS
  FAD_binding_1  98 rqalkyylditgppskqlleaLaefaseeeekqkLekLssdegakeykelklneartllevleefpsvklplefLlevlpqLkpRyYSiSssskvh 193
                    ++al+++ ++t      ++e   ++a+  +  + L  L+ d  + ++++ +  +a  +++++  f  ++l +e L+  l  L+pR YSi+ss+   
     CTQ29578.1 312 SEALQWHFELTVNT-ATIVE---NYATL-TRSESLLPLVGD--KAQLQQYA--AATPIVDMV-RFSPAQLDAEALIGLLRPLTPRLYSIASSQAEV 397
                    9********98654.33444...45544.344678889988..56665555..555666655.67779**************************** PP

                    TTEEEEEEE--EE---SSS--EE-HHHHH CS
  FAD_binding_1 194 pdevhltvvVveyetdgegrirkGvcsny 222
                    + evh+tv Vv ye   egr+r G +s++
     CTQ29578.1 398 ESEVHVTVGVVRYEI--EGRARAGGASSF 424
                    **************6..*******99986 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   2.8e-25   1.7e-21       1     108 [.     457     563 ..     457     564 .. 0.85

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 2.8e-25
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH....HSST CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrtee.dllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells....lkke 91 
                    mi++GtGiaP+r+++++++++   ++k +l++Gn++   d+ly+ e++++ k+   +   +a+ sr++++    k +vqd+l+e+ ++    + ++
     CTQ29578.1 457 MIGPGTGIAPFRAFMQQRAAD-GAQGKNWLFFGNPHFTeDFLYQVEWQSYVKEGLLTRIDLAW-SRDQQQ----KIYVQDKLREQGAElwrwI-ND 545
                    9*******************9.999**********9877***********5544443334444.444444....7*************9*955.9* PP

                    TEEEEEEC.SHHHHHHHH CS
  NAD_binding_1  92 ethvyvCG.ppgMikavr 108
                    ++h+yvCG + +M+k+v+
     CTQ29578.1 546 GAHIYVCGdANRMAKDVE 563
                    ***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.36
# Mc/sec: 4956.82
//
Query:       CTQ29579.1  [L=121]
Description: 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-34  116.7   0.0    6.2e-34  116.6   0.0    1.0  1  PTPS      6-pyruvoyl tetrahydropterin synthase


Domain annotation for each model (and alignments):
>> PTPS  6-pyruvoyl tetrahydropterin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   0.0   3.5e-38   6.2e-34       3     123 .]       7     121 .]       5     121 .] 0.96

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 3.5e-38
                 EEEEEEEEEE--TTTT..GGGGSTEEEEEEEEEEEEEC-STCTTBSS-HHHHHHHHHHHHHCTTTEECCCC-CCHHCCS.--HHHHHHHHHHHHHHHHG CS
        PTPS   3 skefeFdaaHrlrkhe..gkcrnlHGHnykvevtvegeeldetgmvvdfgelkealkeileelDhkflnaddpeleellspTaEnlaklifeelkerlq 99 
                  k+f+F+aaH+l++ +  +kc++lHGH++ v+++++ge++++tg+++df+elk+a+k   ++lDh +ln d+p le+   pT+E lak+i++e+k+r+ 
  CTQ29579.1   7 FKDFTFEAAHHLPHVPegHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFAELKAAFKPTYDRLDHYYLN-DIPGLEN---PTSEVLAKWIWDEMKPRV- 100
                 689**********77778***************************************************.*****97...******************. PP

                 CCCGCEEEEEEEEETTEEEEEEEX CS
        PTPS 100 ekevklskvrvwEtpnswaeyree 123
                    + ls+v v Et+++ + yr+e
  CTQ29579.1 101 ---PLLSAVMVKETCTAGCVYRGE 121
                 ...9*****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 1100.16
//
Query:       CTQ29580.1  [L=223]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-13   49.5   0.0    8.9e-13   48.4   0.0    1.5  1  Fer4_14      4Fe-4S single cluster domain
    1.6e-09   38.3   0.0    2.4e-09   37.8   0.0    1.2  1  Radical_SAM  Radical SAM superfamily
    2.5e-06   27.8   0.1    4.1e-06   27.1   0.1    1.4  1  Fer4_12      4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   1.5e-16   8.9e-13       1      96 [.      24     128 ..      24     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.5e-16
     Fer4_14   1 lfvrlsgCnlsCkgCdnketwks...................elgkpqteelleqilkdlkkseikiqglvltGGePLhyenkkellklvkrlkeeype 80 
                 +f+rl gC++ C +Cd+k+tw++                   ++g+ ++e+ll +i+     +   ++ +v+tGGeP ++    +l +l + l +++  
  CTQ29580.1  24 IFIRLQGCPVGCAWCDTKHTWDKladrevslfsilaktkesdKWGPASSEDLL-AII---GRQGWTARHVVITGGEPCIH----DLTPLTSLLEQNG-- 112
                 7**************************************99999999999999.788...566666777*********88....*************.. PP

     Fer4_14  81 kkiwletngtleiele 96 
                 ++ ++et+gt e+   
  CTQ29580.1 113 FSCQIETSGTHEVRCS 128
                 999******9997655 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0     4e-13   2.4e-09       3     143 ..      27     183 ..      25     197 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 4e-13
                  EESEESS--TTTSCCTT.................HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEE CS
                  xxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   3 vtrgCnlrCsfCarpet.................vrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritve 83 
                   ++gC+ +C +C++++t                  +  +++   s e++l+++ +    + +++v+++ggep  + d++ l+  l ++   g+++ +e
   CTQ29580.1  27 RLQGCPVGCAWCDTKHTwdkladrevslfsilakTKESDKWGPASSEDLLAIIGRQG--WTARHVVITGGEPCIH-DLTPLTSLLEQN---GFSCQIE 118
                  679****************************87766667777777777777776665..559************5.599999999998...******* PP

                  ECSSCHG......HHHHHHHHHTT..-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSE CS
                  xxxxxxx......xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  84 tngtlpd......eeklerllelg..vdrvslgleaaddekvlklmnrghtfeevlealeklreagik 143
                  t+gt+        +  +   ++++   d++s  l+ ad+  ++ +++r  ++e++ e+le+l +   +
   CTQ29580.1 119 TSGTHEVrcspntWVTVSPKVNMRggYDVLSQALQRADE--IKHPVGRVRDIEALDELLETLSDD-KP 183
                  *****7799998855555555555679********9999..6777779999**999999999986.55 PP

>> Fer4_12  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   6.9e-10   4.1e-06       1      81 [.      12     110 ..      12     139 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 6.9e-10
     Fer4_12   1 lnGeGvrl.....slfvsgCnlsCkgCfnketw...............sfksgkeftkelleeiiedlkkesi..egltllGGEPllpenaeallelvk 77 
                 l+GeG ++     +++++gC++ C+ C  k tw               + k+++++  +  e +++ +  +    + ++++GGEP       +l++l  
  CTQ29580.1  12 LQGEGYFTgvpaiFIRLQGCPVGCAWCDTKHTWdkladrevslfsilaKTKESDKWGPASSEDLLAIIGRQGWtaRHVVITGGEPCI----HDLTPLTS 106
                 5889966444444899*****************9999998888888888889999987777777777765433459**********9....44444444 PP

     Fer4_12  78 evke 81 
                  +++
  CTQ29580.1 107 LLEQ 110
                 4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1780.14
//
Query:       CTQ29581.1  [L=369]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-38  130.7   0.0    6.5e-38  130.4   0.0    1.1  1  NAD_binding_4    Male sterility protein
    1.1e-11   44.7   0.0    1.5e-11   44.3   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
    5.3e-06   26.1   0.0    9.1e-06   25.3   0.0    1.4  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    0.00035   19.7   0.0    0.00057   19.0   0.0    1.3  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
     0.0027   16.9   0.0     0.0039   16.4   0.0    1.3  1  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   0.0   1.8e-41   6.5e-38       1     256 [.       6     237 ..       6     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 1.8e-41
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    +TG+TGFLG   lek+L +++++ + llvRa+s e+++eR++e+++k+++ ++ l  ++++ +++ GDl+ p+  L++ +l++    v++i+++aA
     CTQ29581.1   6 ITGVTGFLGGAALEKILHQETRLDLLLLVRADSPEAGLERVKENMRKFNIAEEKL-AMLRQQHILLGDLASPEHFLNDPRLEQ----VTHILNCAA 96 
                    8********************99*****************************997.9********************998765....69******* PP

                    S-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHHHHHH CS
  NAD_binding_4  97 tvnfdepykellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvrearr 192
                      +f +  + +++vNveGt ++ +  +++  l+ +lhv Ta+++  + + +             +++ e ++ +++  +Y+ sK   E+l++++  
     CTQ29581.1  97 VASFGS-NPLIWKVNVEGTLRLAQRMAQVTGLQRFLHVGTAMSCSPEPDSL------------VAESAEFRERAEHLVEYTHSKSTIEQLMQQQC- 178
                    999865.5889************9999999**********99999999766............57889999999999******************. PP

                    HH---EEEEEE-EEE--SSST---TTSHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHHHH CS
  NAD_binding_4 193 rsglpvvivRpsiitgesktGwingsdlgirgllgliakgvlpeilgdkeavldlvpvDyvana 256
                      +lp+vi Rpsi++g++  G   +s+ ++ ++ ++   +++ + ++d   ++d++pvDy+a+a
     CTQ29581.1 179 -PTLPLVIARPSIVVGHTHHGCRPSSS-IFWVFSMGLMLQKFMCSMED---RIDVIPVDYCADA 237
                    .89******************999999.55555555555555556666...6**********98 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   4.1e-15   1.5e-11       2     231 ..       5     247 ..       4     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 4.1e-15
                 EEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC...................EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHH CS
   Epimerase   2 lVtGatGfiGsalvkallekg..yevigldrlssasntarledl...................elveldltdrsalerlfkeeqpdavihlAavggvaa 79 
                 l+tG+tGf+G a ++++l +    +++ l r  s ++  +++ +                   ++  +dl  ++ + +  + eq+++++++Aav++ + 
  CTQ29581.1   5 LITGVTGFLGGAALEKILHQEtrLDLLLLVRADSPEAG-LERVKenmrkfniaeeklamlrqqHILLGDLASPEHFLNDPRLEQVTHILNCAAVASFGS 102
                 9**********999999999966667777777444433.33333589*************988888889988887777777788888888888766555 PP

                 HHHSHHHHHHHHTHHHHHHHHHHHHH.TCTEEEEEEEGGGGTSCSSSSBSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHH.T-EEEEEEESEEEST CS
   Epimerase  80 ssedpadfieknlqgtlnlleaarka.gvkrllflsSsevYGkdaeqpkeettltgpl.kpnspYaaaKlageklveayaaqy.glnaiilrlfnlyGp 175
                     +  +++ n++gtl+l++ + +  g++r+l+++++    + +++   e+++  +  +    Y  +K ++e+l+++   q   l+ +i r++ ++G 
  CTQ29581.1 103 ----NPLIWKVNVEGTLRLAQRMAQVtGLQRFLHVGTAMSCSPEPDSLVAESAEFRERaEHLVEYTHSKSTIEQLMQQ---QCpTLPLVIARPSIVVGH 194
                 ....5556*************999888**********66666555532344443334369999*************95...44478************* PP

                 TS-TTSTTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT CS
   Epimerase 176 rngegevsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvda 231
                  ++  ++s+ i+ + +  l  +   +++ + + + d + v+ +a+a+l++l+++ a
  CTQ29581.1 195 THHGCRPSSSIFWVFSMGLMLQ---KFMCSMEDRIDVIPVDYCADALLMLLNQPLA 247
                 9666668888886666544443...3444688889999999999999999988655 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.5e-09   9.1e-06       1     147 [.       5     153 ..       5     186 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2.5e-09
                    EEETTTSHHHHHHHHHHHHCT-C..CEEEEEEESS.-TTHHHHHCTTT...TTGC..CEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgye..vhgivrrsss.fntgriehlakdpkeelee..nlklhkgDltDssslerllaevqpdevynLAAqshVdvs 91 
                    LiTG++Gf G   +e++l+++ +     +vr +s    ++r+++ +++ +   e+   l+  +  l D +s e+ l++ + ++v +     +V+  
     CTQ29581.1   5 LITGVTGFLGGAALEKILHQETRldLLLLVRADSPeAGLERVKENMRKFNIAEEKlaMLRQQHILLGDLASPEHFLNDPRLEQVTHILNCAAVAS- 99 
                    9**************99998765115556665554145678877766655443332234444555789999999999999999999998889975. PP

                    TTSHHHHHHHHTHHHHHHHHHHHHC.T..TTSEEEEEEEGGGG-S-SSSSB-TTS-- CS
  GDP_Man_Dehyd  92 fekPeytaevnvlGtlrLLeairal.glekkvrfyqaStsEvYGkvqevpqtEttpf 147
                    f +    ++vnv GtlrL + + ++ gl    rf++++t+       ++ + E+  f
     CTQ29581.1 100 FGSNPLIWKVNVEGTLRLAQRMAQVtGL---QRFLHVGTAMSCSPEPDSLVAESAEF 153
                    55556789**********9999887344...6******9866555555555555555 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.6e-07   0.00057       1     158 [.       5     175 ..       5     201 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.6e-07
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD........lrespelleelskvnvkk..........viegDvtdkdklee..alegvdvvihlaslvdv 79 
                 ++tG +GFlG a  +++++ e   ++  l         l   ++++e+++k+n+++          ++ gD+ + ++  +   le+v  ++  a++   
  CTQ29581.1   5 LITGVTGFLGGAALEKILHQETRLDLLLLVradspeagL---ERVKENMRKFNIAEeklamlrqqhILLGDLASPEHFLNdpRLEQVTHILNCAAVASF 100
                 69********99999999988855554433222554440...445566666666555566666666999*****9988662246777777776554443 PP

   3Beta_HSD  80 agkltedeimkvnvkGTrnvle.acvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvl 158
                  g  ++  i kvnv+GT  + + ++  +g+++++++ +a    p  + + ++    e +    h   y++sK+  E+l+ 
  CTQ29581.1 101 -G--SNPLIWKVNVEGTLRLAQrMAQVTGLQRFLHVGTAMSCSP--EPDSLVAESAEFRERAEHLVEYTHSKSTIEQLMQ 175
                 .3..5888*********77765288889****************..667777445555556668889*********9975 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.1e-06    0.0039       1     134 [.       4     141 ..       4     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-06
                      EEEETTTSHHHHHHHHHHHHHB-S.EEEEE...ES-HHHHHHHHHH.......-TTEEE..E....E--TT-HHHHHHHTT..T-SEEEE---- CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpk.kiill...erdElklyeiekelee.elkkkklkv..eivpvigdvrdkerlekaleelkvdvvfhaAAl 87 
                      +l+tG +G +G + +++il+++ +  ++ll   ++ E  l ++++++++ +++++kl +  + + ++gd++  e+  +  +  +v  ++++AA 
       CTQ29581.1   4 LLITGVTGFLGGAALEKILHQETRlDLLLLvraDSPEAGLERVKENMRKfNIAEEKLAMlrQQHILLGDLASPEHFLNDPRLEQVTHILNCAA- 96 
                      59*****************99544233333233677999999999954324455555441134677888888887766666556666666666. PP

                      --HHHHHHSHHHHHHHHHHHHHHHHH.HHHHTT-SEEEEEEEGGGSS- CS
  Polysacc_synt_2  88 KhVPlveenpleaiktNvlgtenvie.aaieagvkkvvliStDKAvnP 134
                        V    +npl  +k Nv gt  +++ +a+ +g ++++ + t   ++P
       CTQ29581.1  97 --VASFGSNPL-IWKVNVEGTLRLAQrMAQVTGLQRFLHVGTAMSCSP 141
                      ..889999998.79********998637888999***99999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3064.50
//
Query:       CTQ29582.1  [L=432]
Description: enolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-142  474.0   2.6   2.1e-142  473.7   2.6    1.1  1  Enolase_C  Enolase, C-terminal TIM barrel domain
    8.7e-58  194.2   0.3    2.1e-57  192.9   0.3    1.7  1  Enolase_N  Enolase, N-terminal domain
    1.3e-06   28.2   0.0    3.3e-06   26.8   0.0    1.7  1  MR_MLE_C   Enolase C-terminal domain-like
    0.00037   19.7   0.4     0.0012   18.1   0.1    1.9  2  MAAL_C     Methylaspartate ammonia-lyase C-terminus


Domain annotation for each model (and alignments):
>> Enolase_C  Enolase, C-terminal TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  473.7   2.6  4.7e-146  2.1e-142       2     294 ..     144     429 ..     143     431 .. 0.99

  Alignments for each domain:
  == domain 1  score: 473.7 bits;  conditional E-value: 4.7e-146
                 -EE-EE-EEEEE-GGGSSSS--SSEEEEE-TT-SSHHHHHHHHHHHHHHHHHHHHHCC.GGGG-B-TTS-B----SSHHHHHHHHHHHHHHCT-TC..T CS
   Enolase_C   2 lvlPvPalnvinGGshagnklalqefmilPvgassfkealrlGaevyhklksvlkkkygksatnvGdeGGfaPnlqsnkealdliveaiekaGykg..k 98 
                 +++PvP++n+inGG+ha+n++++qefmi+Pvga+++kea+r+G+ev+h+l++vlk k+  ++t+vGdeGG+aPnl sn+eal++i+ea+++aGy+   +
  CTQ29582.1 144 YSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAPTLKEAVRMGSEVFHHLAKVLKSKG--MNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELgkD 240
                 78********************************************************..***********************************888* PP

                 BEEEEE--GGGCEETCTTEEECTTTTTT..GGCEEEHHHHHHHHHHHHHHS-EEEEES-S-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHH CS
   Enolase_C  99 vkialdvassefykekdkkydldfkeeesdkskkltseqladlykelvkkyPivsiedpldeddweawkklteelgdkvqivGddltvtnpkrlkeaie 197
                 +++a+d+a+sefy  kd+ky l++++     +k++tse+++++++el+k+yPivsied+lde+dwe+++++t+ lgdk+q+vGddl+vtn+k+lke+ie
  CTQ29582.1 241 ITLAMDCAASEFY--KDGKYVLAGEG-----NKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWEGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIE 332
                 *************..889*******9.....99****************************************************************** PP

                 CT--SEEEE-HHHH-SHHHHHHHHHHHHHTT-EEEEE--SC--S--HHHHHHHHCT-SEEE---S-SHHHHHHHHHHHHHHHHHGCC-EE-GGGCTT CS
   Enolase_C 198 kkaanalllkvnqiGsltesleavklakeagygvvvshrsGetedttiadlavglsaGqiktGaparserlakynqllrieeelgekakyaGkkvrk 294
                 k++an++l+k+nqiGslte+l+a+k+ak+agy++v+shrsGeted+tiadlavg++aGqiktG+++rs+r+akynql+riee+lge+a ++G+k++k
  CTQ29582.1 333 KGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEQAPFNGRKEIK 429
                 *********************************************************************************************9876 PP

>> Enolase_N  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.9   0.3   4.6e-61   2.1e-57       1     131 []       4     134 ..       4     134 .. 0.99

  Alignments for each domain:
  == domain 1  score: 192.9 bits;  conditional E-value: 4.6e-61
                 EEEEEEEEEE-TTS-EEEEEEEEETTC-EEEEE--B-BSSSSSS-B----SSTTSGGGT--HHHHHHHHHTHHHHHTTSBTT-HHHHHHHHHHHH-STT CS
   Enolase_N   1 IkkvkareildSrGnpTvevevttedgalgraavpsGaStgekealelrDgdkkrylgkgvekavenvnekiapaligldvtdqeeiDkllielDgten 99 
                 I kv +rei+dSrGnpTve+ev++e g +g aa+psGaStg++ealelrDgdk+r+lgkgv+kav++vn  ia+a++g+d++dq+ iDk++i+lDgten
  CTQ29582.1   4 IVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTEN 102
                 789************************************************************************************************ PP

                 -TTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH CS
   Enolase_N 100 ksklGaNailavSlAvakaaAkakelplyryl 131
                 ks++GaNailavSlA akaaA++k+lply ++
  CTQ29582.1 103 KSNFGANAILAVSLANAKAAAASKGLPLYAHI 134
                 *****************************997 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   7.5e-10   3.3e-06      41     182 ..     252     398 ..     200     415 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 7.5e-10
                 HTTTSTSEEEEE-TTTSBHHHHHHHHHHHGG.GTESEEESSSSTTTHHHHHHHHHH.HH.SSEEEESTTSSS.HHHHHHHHHHTSESEEEEBHHHHTSH CS
    MR_MLE_C  41 vgpgddvdlmvDanqawdlatAirvarelee.ldllwlEEPvppeddleglaelra.ra.sipiaagEslys.radfrelleagavdivqpdvsrvgGi 135
                 + ++ ++ l+ + n a++ ++   +++el + + +  +E+ +    d+eg a  ++    +i+++++    +  + ++e +e+g +  + ++ +++g +
  CTQ29582.1 252 FYKDGKYVLAGEGNKAFTSEEFTHFLEELTKqYPIVSIEDGLDE-SDWEGFAYQTKvLGdKIQLVGDDLFVTnTKILKEGIEKGIANSILIKFNQIGSL 349
                 33344577888888889************777***********9.57********8722589*****987765999*********************** PP

                 HHHHHHHHHHHHTT-EEEEBS.CS.SHHHHHHHHHHHHTTTTBEEEEEE CS
    MR_MLE_C 136 tearkvaalaeafgvpvapHs.gs.gglglaaslhlaaaipnllileyf 182
                 te+++ +++a+ +g++ ++ +  + +  +++a l + +a+ +++  +++
  CTQ29582.1 350 TETLAAIKMAKDAGYTAVISHrSGeTEDATIADLAVGTAAGQIKTGSMS 398
                 ***************9555552433688999999998888776666555 PP

>> MAAL_C  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.22   9.7e+02     192     220 ..      94     122 ..      74     128 .. 0.78
   2 !   18.1   0.1   2.7e-07    0.0012     135     217 ..     307     390 ..     264     396 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.22
      MAAL_C 192 gaylGGscnetdvsarvsvhvalatrpaq 220
                  + l G+ n  + +a+++  v+la   a 
  CTQ29582.1  94 MIDLDGTENKSNFGANAILAVSLANAKAA 122
                 55678999**************9976655 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 2.7e-07
      MAAL_C 135 ekgikvelvaDeWcntledi.refvdaeaadlvqiktPDlGginntieavlyckekgvgaylGGscnetdvsarvsvhvalatr 217
                   g k++lv D+   t   i +e ++++ a+ + ik   +G++++t+ a+ ++k+ g  a +   + et+ ++ +   v+ a++
  CTQ29582.1 307 VLGDKIQLVGDDLFVTNTKIlKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAG 390
                 4577899**999877766653899*********************************************988766666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3410.65
//
Query:       CTQ29583.1  [L=545]
Description: CTP synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.8e-125  417.0   0.0   3.7e-125  416.6   0.0    1.2  1  CTP_synth_N    CTP synthase N-terminus
    3.2e-65  219.5   0.0    5.8e-65  218.6   0.0    1.5  1  GATase         Glutamine amidotransferase class-I
    7.6e-11   42.2   0.2    2.4e-09   37.3   0.0    2.8  2  Peptidase_C26  Peptidase C26
     0.0099   15.9   0.0      0.015   15.4   0.0    1.4  1  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain


Domain annotation for each model (and alignments):
>> CTP_synth_N  CTP synthase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  416.6   0.0  8.3e-129  3.7e-125       2     265 .]       5     266 ..       4     266 .. 0.99

  Alignments for each domain:
  == domain 1  score: 416.6 bits;  conditional E-value: 8.3e-129
                  EEEEEE--STTTTHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSSTT--CCCC--EEE-TT--EEETHHHHHHHHHT----GGGEEEHHHHHHHHHHH CS
  CTP_synth_N   2 yilvtGGvvSglGkGiiaaslgallksrglkvtlikiDPYlnvdagtlsplehGEvfvlddGaetDlDlGnYeRfldikltkennittGkiyksviek 99 
                  yi+vtGGvvS+lGkGi+aasl+a+l++rgl+vt++k+DPY+nvd+gt+sp++hGEvfv++dGaetDlDlG+YeRf+ +k+t++nn+ttG+iy++v++k
   CTQ29583.1   5 YIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMTRRNNFTTGRIYSDVLRK 102
                  9************************************************************************************************* PP

                  HHTTTTTT----CCCHHHHHHHHHHHHHH.HCT-SEEEEEE-S-TTSGGGHHHHHHHHHHHHHH-TTTEEEEEEEE--B-TTTSSB-HHHHHHHHHHH CS
  CTP_synth_N 100 errGdylGktvqviphvtdeikeriekvakkveadvviveigGtvgdieslpfleairqlklelgkenvllihvtlvpvlkaagelktkptqhsvkel 197
                  errGdylG+tvqviph+t++iker+ +  +   +dvv+veigGtvgdieslpfleairq+++e+g+e++l++h+tlvp+++aage+ktkptqhsvkel
   CTQ29583.1 103 ERRGDYLGATVQVIPHITNAIKERVLAGGE--GHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAAAGEVKTKPTQHSVKEL 198
                  **************************9998..8***************************************************************** PP

                  HHHT---SEEEEEESS---HHHHHHHHHHCT--GGGEEEEE--S-GGGHHHHHHHCTHHHHHHHHTT- CS
  CTP_synth_N 198 rslGiqpdiivcrsekeleeevkekialfcnvekeavisvkdvesiyevpllleeqglaelileklkl 265
                   s+Giqpdi++crs+++++++ ++kialfcnv+++avis kdv+siy++p ll++qgl+++i+++++l
   CTQ29583.1 199 LSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSL 266
                  ****************************************************************9976 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.6   0.0   1.3e-68   5.8e-65       2     190 .]     301     535 ..     300     535 .. 0.93

  Alignments for each domain:
  == domain 1  score: 218.6 bits;  conditional E-value: 1.3e-68
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHH..THHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTT........ CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeile..llknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgr........ 90 
                 l D+y+sv+e+l+h +++++v+v+++ id+++ e++   +lk+ d+il++gG+g++gvegki+++++aren+iP+LGICLGmQ+++ief+r        
  CTQ29583.1 301 LPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGveILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARnvagmena 399
                 79*********************************88856***************************************************77777777 PP

                 .........................EEEEEECEEEEEEEEEEEETTT........CGGTTTTSEEEEEEEEEEEEESG...CHHHTTEEEEEEEETTEE CS
      GATase  91 .........................kvvkekekehhggtmrlgddet........allyglknevierhrHryevnpk...elepaglevtakseddee 153
                                          +v+ ++ek+++ggtmrlg++++        ++lyg+ ++++erhrHryevn++    +e agl+v+++s dd +
  CTQ29583.1 400 nstefvpdckypvvalitewrdedgNVEVRSEKSDLGGTMRLGAQQCqlsddslvRQLYGE-PTITERHRHRYEVNNMllkPIEAAGLRVAGRSGDD-Q 496
                 77777777777777776666666666669999****************************9.9**************9*999************998.9 PP

                 EEEEEEETT.T.EEEESSBTTSTTSTTHHHHHHHHHHHH CS
      GATase 154 lmeiiekkn.p.fvgvQFHPEststpegpellfnflika 190
                 l+eiie +n p fv++QFHPE+tstp++ ++lf +++ka
  CTQ29583.1 497 LVEIIEVPNhPwFVACQFHPEFTSTPRDGHPLFAGFVKA 535
                 ************************************986 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.32   1.4e+03      50      67 ..     335     352 ..     302     354 .. 0.75
   2 !   37.3   0.0   5.3e-13   2.4e-09      95     216 .]     362     517 ..     358     517 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.32
  Peptidase_C26  50 edvkaildkldgllltGg 67 
                    +   +il+ ld++l++Gg
     CTQ29583.1 335 TRGVEILKDLDAILIPGG 352
                    34458999*********8 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 5.3e-13
  Peptidase_C26  95 laLiraalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhrehe.........................q.....saashavkvekgslla 160
                    +a  r a e+++P lgiC+G+q+  + +  +++   +   + t+++ ++                         +        +++ ++  +sl+ 
     CTQ29583.1 362 IATARYARENNIPYLGICLGMQVALIEFARNVAGMEN--ANSTEFVPDCkypvvalitewrdedgnvevrseksDlggtmRLGAQQCQLSDDSLVR 455
                    66778999**************987777766654433..34555555556677999998888888887776655055556788999999******* PP

  Peptidase_C26 161 ellgseeievnslHhqaike......laeelrveAvae.DgviEaieseeakafvlgvQwHPE 216
                    +l+g+ +i     H+  +++       a +lrv  ++  D+++E ie+++++ ++++ Q+HPE
     CTQ29583.1 456 QLYGEPTITERHRHRYEVNNmllkpiEAAGLRVAGRSGdDQLVEIIEVPNHP-WFVACQFHPE 517
                    ****899999999999999999999889*********989**********88.99*******9 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.3e-06     0.015       8      55 ..      14      89 ..       7     350 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.3e-06
                TTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH...............................C CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................x RF
        CbiA  8 GGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep...............................d 55
                +  GK   aa+La++l  rgl+V   ++Dp  n +    g+   i+                                +
  CTQ29583.1 14 SSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDP---GTMSPIQHgevfvtedgaetdldlghyerfirtkmtrrnN 89
                5569**************************999887...5544444445555555555555555555555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3972.19
//
Query:       CTQ29584.1  [L=61]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 494.26
//
Query:       CTQ29585.1  [L=263]
Description: nucleoside triphosphate pyrophosphohydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-37  127.5   2.5    1.5e-27   95.5   0.0    2.7  2  MazG      MazG nucleotide pyrophosphohydrolase domain
    1.1e-09   38.6   3.3     0.0012   19.2   0.5    3.3  3  PRA-PH    Phosphoribosyl-ATP pyrophosphohydrolase
  ------ inclusion threshold ------
      0.024   14.8   0.2        0.1   12.8   0.0    2.0  2  DUF3168   Protein of unknown function (DUF3168)


Domain annotation for each model (and alignments):
>> MazG  MazG nucleotide pyrophosphohydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0   2.6e-31   1.5e-27       1      74 []      27     100 ..      27     100 .. 0.99
   2 !   30.4   1.3   5.4e-11   3.2e-07       8      70 ..     167     227 ..     161     230 .. 0.90

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 2.6e-31
                 --HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-GGGG CS
        MazG   1 qtpetllaylleEvgEvaeaIkkedrdeleeELGDvLlqvlflaniaeeeggidledvaetileKlerRhphvf 74 
                 qt+ t+++y+leE++Ev++aI++ed+d+l+ ELGD+L+qv+f+a++a+eeg+++++d++++i +KlerRhph+f
  CTQ29585.1  27 QTFATIAPYTLEETYEVLDAIQREDFDDLRGELGDLLFQVVFYAQMAQEEGRFNFDDICAAISDKLERRHPHIF 100
                 7999********************************************************************98 PP

  == domain 2  score: 30.4 bits;  conditional E-value: 5.4e-11
                 HHHHHHHHHHHHHHHT..T-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH- CS
        MazG   8 aylleEvgEvaeaIkk..edrdeleeELGDvLlqvlflaniaeeeggidledvaetileKlerRh 70 
                   + eE++Ev+++ ++   d+ +leeE+GD+L+  ++l++     +g++ e +++++  K+erR 
  CTQ29585.1 167 DKVHEEIDEVMHEAQQavVDEAKLEEEVGDLLFATVNLSRH----LGVKAEVALQKANLKFERRF 227
                 5678**********99777888******************6....******************95 PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.4e-07    0.0032      19      62 ..      23      67 ..      11      91 .. 0.78
   2 !   19.2   0.5     2e-07    0.0012      23      74 ..     159     214 ..     139     232 .. 0.84
   3 ?   -0.7   0.0      0.35   2.1e+03      71      81 ..     248     258 ..     239     260 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 5.4e-07
                -.-HHHHHHHHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHH CS
      PRA-PH 19 s.taelaslraaligEEavElleaasegdlaeladelaDllYvty 62
                + ++++++ +a ++ EE  E+l+a +++d  +l  el Dll+++ 
  CTQ29585.1 23 WdKEQTFATIAPYTLEETYEVLDAIQREDFDDLRGELGDLLFQVV 67
                4467788889*******************************9764 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 2e-07
                 HHHH..HHHHHHHHHHHHHHHT-SC..HHHHHHHHHHHHHHHHHHHHHHCT--CHH CS
      PRA-PH  23 lasl..raaligEEavElleaaseg..dlaeladelaDllYvtygllvllGidlda 74 
                 + sl  +++++ EE++E+ + a++   d a+l +e+ Dll+ t  l  +lG++++ 
  CTQ29585.1 159 WTSLgpVLDKVHEEIDEVMHEAQQAvvDEAKLEEEVGDLLFATVNLSRHLGVKAEV 214
                 455556899***********8887778*************************9875 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.35
                 -CHHHHHHHHH CS
      PRA-PH  71 dldavfeevhr 81 
                 ++++v++ev+r
  CTQ29585.1 248 TMEEVWQEVKR 258
                 35788999987 PP

>> DUF3168  Protein of unknown function (DUF3168)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.7e-05       0.1      34      86 ..      43      98 ..      30     130 .. 0.88
   2 ?   -0.7   0.0      0.27   1.6e+03      67      86 ..     171     191 ..     168     208 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.7e-05
     DUF3168 34 vlgpvqsrdasalcgdgaevrvqldvwa...repgraeakalaaavraaLddaala 86
                vl ++q  d ++l g+  +  +q+  +a   +e+gr  +++++aa+++ L+   ++
  CTQ29585.1 43 VLDAIQREDFDDLRGELGDLLFQVVFYAqmaQEEGRFNFDDICAAISDKLERRHPH 98
                889999**********************9999******************777666 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.27
     DUF3168  67 aeakalaaavraaL.ddaala 86 
                  e+++++  +++a+ d+a l+
  CTQ29585.1 171 EEIDEVMHEAQQAVvDEAKLE 191
                 688999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2025.01
//
Query:       CTQ29586.1  [L=745]
Description: (p)ppGpp synthetase I/GTP pyrophosphokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-39  134.1   0.7    7.4e-39  133.0   0.7    1.6  1  HD_4       HD domain
    5.8e-37  126.5   0.2    1.9e-36  124.9   0.0    2.0  2  RelA_SpoT  Region found in RelA / SpoT proteins
    6.7e-22   77.3   0.1    5.1e-21   74.5   0.0    2.5  2  TGS        TGS domain
    2.9e-18   66.2   1.1    6.8e-18   65.0   1.1    1.6  1  ACT_4      ACT domain
    2.3e-10   40.0   0.3    8.2e-10   38.3   0.3    2.0  1  ACT        ACT domain
  ------ inclusion threshold ------
      0.023   14.5   0.2      0.066   13.0   0.1    1.8  1  Prok-JAB   Prokaryotic homologs of the JAB domain
      0.044   13.6   0.2       0.37   10.6   0.0    2.4  3  AAA_26     AAA domain


Domain annotation for each model (and alignments):
>> HD_4  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.7   2.9e-42   7.4e-39      16     155 ..      51     191 ..      34     192 .. 0.93

  Alignments for each domain:
  == domain 1  score: 133.0 bits;  conditional E-value: 2.9e-42
        HD_4  16 tgepllahalevAailaelgldaetviAalLhdvveda.lsleeirerfGeevarLvegvsklkrlqkvaaadeaeekaeqvenlRkmLlAmveDirvv 113
                 +   ll  ++e+++il++l++d +t+ AalL+ + +    s+e+++e  G++v++L++gv++++++++++a+ +++ ++eqv+n+R+mLlAmv+D+r+v
  CTQ29586.1  51 QADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADGEvVSEEVMQESVGKSVVTLIHGVRDMAAIRQLKATHTDSVSSEQVDNIRRMLLAMVDDFRCV 149
                 4555677899*************************966688899******************************************************* PP

        HD_4 114 liklAdrlqtlrslaaakeekrrdvaretldiyaplAnrlGi 155
                 +iklA+r+  lr +++a+e++r+  a+e+ +iyaplAnrlGi
  CTQ29586.1 150 VIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGI 191
                 *****************************************9 PP

>> RelA_SpoT  Region found in RelA / SpoT proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.6   4.2e+03      24      40 ..     107     129 ..      95     162 .. 0.62
   2 !  124.9   0.0   7.5e-40   1.9e-36       1     115 [.     251     360 ..     251     362 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.6
                 CCCSSTSEEEEEEESS......H CS
   RelA_SpoT  24 feeitDligiRvivef......k 40 
                  + ++D+++iR +  +       
  CTQ29586.1 107 IHGVRDMAAIRQLKAThtdsvsS 129
                 56788999999776553444442 PP

  == domain 2  score: 124.9 bits;  conditional E-value: 7.5e-40
                 EEE--HHHHHHHHHHCT--CCCCCCCSSTSEEEEEEESSHHHHHHHHHHHHT-SSSEEEEEEETSTSHCTTCCSEEEEEEEETTEEEEEEEEEEEEEHH CS
   RelA_SpoT   1 gRvKslysiieKlerkgikveekfeeitDligiRvivefkddvyevlelikklwdvkpkrfkdyiaepkengYrslHtvvssekgeekvlvEiQiRtia 99 
                 gR+K++ysi++K+++k+     +f+e+ D+ ++R++ e  +d+y++l+++++++++ p++f+dy+a+pk+ngY+s+Htvv    g+++++vEiQiRt++
  CTQ29586.1 251 GRPKHIYSIWRKMQKKH-L---AFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVV---LGPSGKTVEIQIRTRQ 342
                 6****************.6...8*********************************************************...**************** PP

                 HHHHHH..HHHHHHHHCT CS
   RelA_SpoT 100 mdawae..iehhlrYkek 115
                 m++ ae  +++h++Yke+
  CTQ29586.1 343 MHEDAElgVAAHWKYKEG 360
                 ****************96 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.86   2.2e+03      13      42 ..     223     252 ..     215     265 .. 0.82
   2 !   74.5   0.0     2e-24   5.1e-21       1      60 []     407     466 ..     407     466 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.86
                 EETTB-HHHHHHHHSTTHHHHEEEEEECSE CS
         TGS  13 lprgatveDfAykIhrslakkfiyAlVnGq 42 
                 ++r + +e+f  ++ ++++ + + A V G+
  CTQ29586.1 223 IDREHYIEEFVGHLRSEMKAEGVKAEVYGR 252
                 56777899***********99999999994 PP

  == domain 2  score: 74.5 bits;  conditional E-value: 2e-24
                 EEEEETTSSEEEEETTB-HHHHHHHHSTTHHHHEEEEEECSEEEETTSBB-SSEEEEEEE CS
         TGS   1 irvytPdGkvpdlprgatveDfAykIhrslakkfiyAlVnGqrvgldhvLedgdvveIvt 60 
                 ++v+tP+G+v+dlp g+t+ DfAy+Ih+++++++i+A++ G++v+ +++L+ gd +eI+t
  CTQ29586.1 407 VYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIIT 466
                 79********************************************************98 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   1.1   2.6e-21   6.8e-18       4      80 .]     665     741 ..     663     741 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 2.6e-21
       ACT_4   4 sytvrleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLsrviakLraipgVisVeR 80 
                  y   ++vea+dr+glL+dit+++++ek+n+  v ++++ +++la+i++t+e+ +++ L rv+ kL+++p+Vi+++R
  CTQ29586.1 665 GYSLVVRVEANDRSGLLRDITTILANEKVNVLGVASRSDTRQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR 741
                 688899*********************************99*********************************999 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.3   3.2e-13   8.2e-10       2      66 ..     669     734 ..     668     735 .. 0.97

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 3.2e-13
                 EEEEEEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTT.ECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT   2 vlrvgvpDrPGlLarvfgaladrgiNidsieqrssedk.vagivfvvivvdeedleevlealkkle 66 
                 v+rv++ Dr GlL +++++la+  +N+  + +rs+ ++ +a+i +++++ + ++l  vl +l++++
  CTQ29586.1 669 VVRVEANDRSGLLRDITTILANEKVNVLGVASRSDTRQqLATIDMTIEIYNLQVLGRVLGKLNQVP 734
                 799************************************************************997 PP

>> Prok-JAB  Prokaryotic homologs of the JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.6e-05     0.066       3      91 ..     227     311 ..     225     337 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
    Prok-JAB   3 svlsalvaharrahpeEtcGlllgkeseseevivvplvnewsnrfeipdpedslarlkf....earerglevvgiwHSHpggsarPSetDrrd 91 
                 + ++++v h+r++ ++E++ + + ++ +++++ +++  +    + ++ + ++ +++ ++    e+ ++    +gi+H+H  +   P e D+  
  CTQ29586.1 227 HYIEEFVGHLRSEMKAEGVKAEVYGR-PKHIYSIWRKMQ----KKHL-AFDELFDVRAVrivaERLQDCYAALGIVHTHYRHL--PDEFDDYV 311
                 56789999*************99999.999999999665....4555.555555555556678****************9988..66666655 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.65   1.7e+03      10      20 ..      97     107 ..      95     148 .. 0.71
   2 ?   10.6   0.0   0.00014      0.37      61     116 ..     554     612 ..     534     615 .. 0.67
   3 ?   -1.2   0.1      0.58   1.5e+03     152     190 ..     688     732 ..     668     740 .. 0.49

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.65
      AAA_26  10 tgvGKTvvslg 20 
                 ++vGK+vv+l+
  CTQ29586.1  97 ESVGKSVVTLI 107
                 789*****975 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00014
      AAA_26  61 yelpeplalsaplspelaarqegedid.lekiv...kelekdadivvVEGagglgvpite 116
                  + + +++ + ++++  aa+q+  +++ l++     +  +kd+  vvVEG+g l+ +i++
  CTQ29586.1 554 LNQMVNFLQA-QFNKPSAAEQDAAALKqLQQKTytpQNRTKDNGRVVVEGVGNLMHHIAR 612
                 5555666444.444555555555444435544467888999**************99875 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.58
      AAA_26 152 lrqknvrvlGvilNkvrnpenvetlekksgi.......pvlGvvPy 190
                 l +++v+vlGv        ++++t+  +++i       +vlG + +
  CTQ29586.1 688 LANEKVNVLGVASRS-DTRQQLATIDMTIEIynlqvlgRVLGKLNQ 732
                 345666777664333.333333333333333333334455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 5425.92
//
Query:       CTQ29587.1  [L=434]
Description: 23S rRNA (uracil-5)-methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-27   95.6   0.0    9.8e-26   90.6   0.0    2.7  2  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
      3e-13   49.8   0.0    5.7e-13   48.9   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
    5.8e-10   39.0   0.6    1.1e-09   38.1   0.4    1.6  1  TRAM             TRAM domain
    2.2e-09   37.9   0.0    7.5e-09   36.2   0.0    1.9  1  Methyltransf_25  Methyltransferase domain
    3.4e-07   30.2   0.0    6.4e-07   29.3   0.0    1.4  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    9.1e-06   24.9   0.0    1.7e-05   24.0   0.0    1.4  1  RrnaAD           Ribosomal RNA adenine dimethylase
    1.5e-05   24.9   0.0    2.3e-05   24.2   0.0    1.3  1  Met_10           Met-10+ like-protein
    2.6e-05   24.0   0.0    5.5e-05   22.9   0.0    1.5  1  Cons_hypoth95    Conserved hypothetical protein 95
    7.4e-05   22.4   0.0    0.00014   21.5   0.0    1.4  1  MTS              Methyltransferase small domain
    0.00011   22.8   0.0    0.00052   20.6   0.0    2.1  2  Methyltransf_11  Methyltransferase domain
    0.00087   19.2   0.0     0.0021   17.9   0.0    1.6  1  Methyltransf_23  Methyltransferase domain
      0.002   17.6   0.0     0.0062   16.0   0.0    1.7  2  Methyltransf_4   Putative methyltransferase
     0.0033   17.1   0.0     0.0071   16.0   0.0    1.5  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
  ------ inclusion threshold ------
      0.013   15.2   0.0        5.3    6.7   0.0    3.1  2  UPF0020          Putative RNA methylase family UPF0020
      0.019   14.3   0.0       0.03   13.6   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.047   13.1   0.0       0.21   10.9   0.0    2.0  3  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.072   12.7   0.0       0.51    9.9   0.0    2.0  2  Methyltransf_15  RNA cap guanine-N2 methyltransferase
      0.083   13.0   0.0       0.17   12.0   0.0    1.5  1  FtsJ             FtsJ-like methyltransferase
      0.084   12.2   0.0       0.15   11.4   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
        0.1   12.2   0.0       0.26   10.9   0.0    1.6  2  TPMT             Thiopurine S-methyltransferase (TPMT)


Domain annotation for each model (and alignments):
>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.23   2.1e+02      26     100 ..     118     193 ..      99     242 .. 0.70
   2 !   90.6   0.0   1.1e-28   9.8e-26     178     357 .]     262     432 ..     251     432 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.23
  tRNA_U5-meth_tr  26 evfespeehyrlraefrlwheeddlyyim.fdqktk.kkirvdefdaaselinelmkallaalkqdeklreklfqvd 100
                      +v +     yr ra ++l  + ++    m f q++    + v + ++   ++ +l++a+ + l + ++lr+ l +v+
       CTQ29587.1 118 DVIAGAPWGYRRRARLSLNYQPKTQQLQMgFRQANAkAIVDVVQCPVLVPQLEALLPAVRECLSALSALRH-LGHVE 193
                      46666667799999999977755555555265554413334557778888888888888888887777764.44455 PP

  == domain 2  score: 90.6 bits;  conditional E-value: 1.1e-28
  tRNA_U5-meth_tr 178 sftqPnaavnekmleWalevtqeskgd.llelycGnGnfslalarnfekvlateiakssveaaqyniaankidnvqiirlsaeeltealkkkre 270
                       f+q n  vn++m+  ale ++ + +d +l+l+cG Gnf+l+la++  +v+  e   + ve  + n a n + nv +      +l e ++++  
       CTQ29587.1 262 DFIQVNDGVNQQMVRTALEWLDLRPEDrVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAARNGLSNVTFFHE---NLEEDVTRQ-- 350
                      59*******************99877549**********************************************99764...444444322.. PP

  tRNA_U5-meth_tr 271 frrlkgidlksyafetifvdPPraGldketvklvkky.erilyiscnPetlkenleel.sethrverlalfdqfpythhlesGvllekk 357
                                ++ f+++++dP raG    + +++k    r++y+scnP tl+ + e+l +  ++++rla++d fp+t hles vl+e++
       CTQ29587.1 351 -------AWAKHGFDKVLLDPARAGAPGVMPHIIKLApRRVVYVSCNPATLARDSETLlQAGYQIQRLAMLDMFPHTGHLESMVLFERR 432
                      .......3567899**********9877777777754158************99998625679**********************9985 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   6.3e-16   5.7e-13       4      81 ..     287     363 ..     284     411 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 6.3e-16
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsn 81 
                      + rvlDl CG G++t+ la +    a+vvG++  +  +e+ rena+++gl+nv+F +++ ee    + +++  fD +l +
       CTQ29587.1 287 EDRVLDLFCGMGNFTLPLATR---AAHVVGVEGVPALVEKGRENAARNGLSNVTFFHENLEEdVTRQaWAKHGFDKVLLD 363
                      679****************65...69**************************************************9987 PP

>> TRAM  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.4   1.2e-12   1.1e-09       2      61 ..      11      66 ..      10      67 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 1.2e-12
                XXXXXEEEEEEEEE-.TTSEEEEEET.TEEEEETT--T..TEEEEEEEEEE-SSEEEEEE CS
        TRAM  2 syvGstqeVlveglsksegegiGrtdngkvvfvpgdlpgIGdfVeVkItkvkrqyLrGel 61
                ++ ++ ++V+v++l+ + g+g++r++ gk++fv+g lp  ++ +eV   ++k+qy+r+e+
  CTQ29587.1 11 VTTRQIITVTVNDLD-PFGQGVARHQ-GKALFVSGVLP--HEQAEVVLVEDKKQYARAEV 66
                6789***********.**********.***********..******************98 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   8.4e-12   7.5e-09       1      69 [.     290     361 ..     290     370 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 8.4e-12
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCG.BS...SSTTTEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaed.lp...fedgsfDlvv 69 
                      vLdl cG G++tl la+r   a+v+gv+  ++++e+ re+a+++gl nv+f + ++e+ +     +++ fD v+
       CTQ29587.1 290 VLDLFCGMGNFTLPLATRA--AHVVGVEGVPALVEKGRENAARNGLsNVTFFHENLEEdVTrqaWAKHGFDKVL 361
                      9*****************6..******************************99888553332225777777776 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   7.1e-10   6.4e-07      60     130 ..     273     340 ..     262     367 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 7.1e-10
                 HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEE CS
        PCMT  60 hmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvv 130
                 +mv +ale+l+l++ +rvL++ +G G  t  la+   + ++vv++e ++ lve+ ++n  +++l+nv++ +
  CTQ29587.1 273 QMVRTALEWLDLRPEDRVLDLFCGMGNFTLPLAT---RAAHVVGVEGVPALVEKGRENAARNGLSNVTFFH 340
                 7999***********************9988775...677899************************9865 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.9e-08   1.7e-05      14      79 ..     270     337 ..     260     348 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.9e-08
                 --HHHHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHCC-SEEEEE-S-HHHHHHHHCHTT..TCCCEE CS
      RrnaAD  14 knkkvineIldklnleekltvleigpGkGilTeeLakrakqvvvlElderLakllqkkls..kdeklk 79 
                 +n++++  +l+ l+l++++ vl++  G G++T +La ra +vv +E  ++L++  +++      ++++
  CTQ29587.1 270 VNQQMVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAArnGLSNVT 337
                 6999************************************************9998866544444555 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.6e-08   2.3e-05      98     169 ..     284     353 ..     263     387 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.6e-08
                 --TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-E CS
      Met_10  98 veegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqla 169
                  ++ ++V+d+f G+G f++p+a   +a  v++++  P+ v+  +en ++N +++v    ++  ++v+r+  a
  CTQ29587.1 284 LRPEDRVLDLFCGMGNFTLPLAT--RAAHVVGVEGVPALVEKGRENAARNGLSNVTFFHENLEEDVTRQAWA 353
                 56899*****************8..9**************************99875444445555553333 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   6.1e-08   5.5e-05      35     121 ..     281     364 ..     271     387 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 6.1e-08
                    HHCCCHCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE-- CS
  Cons_hypoth95  35 ilaaeiegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDP 121
                    +l+ +  + rvLDlf+G G   l  + R  +++v ve  ++ v+  +en ++ +l++ ++ + e+ +e++ ++a +k+ fd v lDP
     CTQ29587.1 281 WLDLR-PEDRVLDLFCGMGNFTLPLATRA-AHVVGVEGVPALVEKGRENAARNGLSN-VTFFHENLEEDVTRQAWAKHGFDKVLLDP 364
                    55533.4568*************999996.7899********************997.99999999********************* PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.5e-07   0.00014      24      95 ..     279     349 ..     273     379 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.5e-07
                 HHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTT CS
         MTS  24 letlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleevee 95 
                 le l+ + +++vlDl cG+G  ++ la +  +  v+ v+   + +e  +en+++n+l+ v+++++++ e+v+ 
  CTQ29587.1 279 LEWLDLRPEDRVLDLFCGMGNFTLPLATRAAH--VVGVEGVPALVEKGRENAARNGLSnVTFFHENLEEDVTR 349
                 56778888999*****************9888..9***********************999999999998873 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       6.6   5.9e+03      48      85 ..     149     180 ..     128     184 .. 0.62
   2 !   20.6   0.0   5.8e-07   0.00052       1      66 [.     291     361 ..     291     365 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 6.6
                      TTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHH CS
  Methyltransf_11  48 vvadaeklpfednsfDlvvssevlhhvedpekalkeia 85 
                      ++a+a+      + +D+v +   +  +e +  a++e+ 
       CTQ29587.1 149 RQANAK------AIVDVVQCPVLVPQLEALLPAVRECL 180
                      333333......46788888888888877777777775 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 5.8e-07
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEE....TTEECCCTSS-TT-EEEEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvef....vvadaeklpfednsfDlvv 66 
                      Ld+ cG G ++ +la r+a+vvgv+  +++++  +e+a ++gl +v+f    +++d+++   +++ fD v+
       CTQ29587.1 291 LDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAARNGLsNVTFfhenLEEDVTRQAWAKHGFDKVL 361
                      7888***********999**************************888844445555555667777777665 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.3e-06    0.0021      17      62 ..     279     339 ..     265     390 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.3e-06
  Methyltransf_23  17 lpk..lraggrvLdiGcGtGillevlrengfsvtgvDlspeaveiae.............k 62 
                      l++  lr+  rvLd+ cG G+++  l+++ ++v+gv+  p++ve+ +              
       CTQ29587.1 279 LEWldLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRenaarnglsnvtfF 339
                      3444479999**********************************98877776666555441 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.5   2.3e+03      91     112 ..       8      29 ..       6      75 .. 0.73
   2 !   16.0   0.0   6.9e-06    0.0062       5      74 ..     290     358 ..     287     363 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.5
                     GGSTTSHHHHHHHHHHEEEEEE CS
  Methyltransf_4  91 KrRllqpellkelarvLkkgGv 112
                     KrR++++++++   + L + G+
      CTQ29587.1   8 KRRVTTRQIITVTVNDLDPFGQ 29 
                     7888888888777777766554 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 6.9e-06
                     EEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-C.CCHHHHCS-TTSEE CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgda.lkvllelledgsle 74 
                     vl++ cG+G+f++ lA++ ++  ++G+E    +v+k  +++++++l+N+  ++ +   +v +++ +++ ++
      CTQ29587.1 290 VLDLFCGMGNFTLPLATRAAH--VVGVEGVPALVEKGRENAARNGLSNVTFFHENLeEDVTRQAWAKHGFD 358
                     78999*************987..69***************************9997444555555555555 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   7.9e-06    0.0071       3      87 ..     281     364 ..     279     383 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.9e-06
                      HH---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTC..CHHHHCC..EEEEEEEE CS
  Methyltr_RsmB-F   3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDark..idkvlggelfDriLlDa 87 
                      +L++++e+++lDl ++ G  T     l   +++vv v+     +++  en  r g+ n++ ++  + +  + +  +++ fD++LlD 
       CTQ29587.1 281 WLDLRPEDRVLDLFCGMGNFTL---PLATRAAHVVGVEGVPALVEKGRENAARNGLSNVTFFHENLEEdvTRQAWAKHGFDKVLLDP 364
                      799*************998775...555679****************************99987766522556677789*******4 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.046        41     108     135 ..     101     129 ..      90     155 .. 0.76
   2 ?    6.7   0.0    0.0059       5.3      26     111 ..     284     343 ..     266     364 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.046
                 EE--GGG--.STTS---EEEE-------- CS
     UPF0020 108 sqadaakLr.lkegevdvivtnpPYGerl 135
                 +q + a+L  l++ evd +++  P+G r 
  CTQ29587.1 101 QQSKRAALGrLMKREVDDVIAGAPWGYRR 129
                 333444455577889***********985 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0059
                 --TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE-- CS
     UPF0020  26 wkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqad 111
                 ++p+++ lD +CG G + +  a+ +a+++                          g++  +++v+++reNa + g+++   f +  
  CTQ29587.1 284 LRPEDRVLDLFCGMGNFTLPLATRAAHVV--------------------------GVEGVPALVEKGRENAARNGLSNVTFFHENL 343
                 55666666666666666655555555555..........................7777777777777777777777766666554 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.4e-05      0.03      47     109 ..     286     345 ..     272     359 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.4e-05
                      -TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT CS
  Ubie_methyltran  47 rgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaee 109
                      +  +vlD+ +G g++++ l+  +    +vv+++  + +++ g++ + ++g +n+ f + n ee
       CTQ29587.1 286 PEDRVLDLFCGMGNFTLPLATRAA---HVVGVEGVPALVEKGRENAARNGLSNVTFFHENLEE 345
                      45689*************988765...678888889*********************999765 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.7   2.4e+03     253     278 ..      36      62 ..      16      69 .. 0.61
   2 ?   -2.3   0.0       2.6   2.3e+03     220     250 ..     151     180 ..     133     184 .. 0.71
   3 ?   10.9   0.0   0.00024      0.21     151     221 ..     278     347 ..     273     361 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.7
        PrmA 253 ggllilSGilkekaeeva.ealeqgfe 278
                 g  l +SG+l + + ev   + ++++ 
  CTQ29587.1  36 GKALFVSGVLPHEQAEVVlVEDKKQYA 62 
                 345678999865554444044444555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.6
        PrmA 220 ellkeekadvivaNILaevlielaedikklv 250
                    +++ +dv+ + +L   l  l++ + +++
  CTQ29587.1 151 A-NAKAIVDVVQCPVLVPQLEALLPAVRECL 180
                 2.2347899*******999999999998876 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00024
        PrmA 151 clealeklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.klev..alseel 221
                 +le+l+  ++++++vlD+ +G G  ++  a   a++vv+v   +  v+  +eNa++N++++  +    +l+e++
  CTQ29587.1 278 ALEWLD--LRPEDRVLDLFCGMGNFTLPLA-TRAAHVVGVEGVPALVEKGRENAARNGLSNvTF-FheNLEEDV 347
                 455555..68899**********9998755.67899**********************999533.311344444 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.56     5e+02      66     101 ..     110     142 ..      51     160 .. 0.78
   2 ?    9.9   0.0   0.00057      0.51       3      80 ..     289     365 ..     287     371 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.56
  Methyltransf_15  66 klekikvdlvflSpPwGGpsYkkqekfdlkkklkpl 101
                      +l k +vd v++  PwG   Y+++  ++l+++ k  
       CTQ29587.1 110 RLMKREVDDVIAGAPWG---YRRRARLSLNYQPKTQ 142
                      44445669999999**9...8888888886655544 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00057
  Methyltransf_15   3 vilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvflSpP 80 
                       +lDlf+G G  +  +a    +v+++e  +  ++   +Na   g  +++t+ + +++e + +   +k  +d v+l p 
       CTQ29587.1 289 RVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAARNGL-SNVTFFHENLEEDVTRQAWAKHGFDKVLLDPA 365
                      69*************************************999875.57999999999999888888888888888775 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00019      0.17      19      96 ..     284     365 ..     270     408 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
                 S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS.........HHH...TTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE--S CS
        FtsJ  19 fkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........apl...pgvttiqgditdpetiekikealserkvdlvvsDga 96 
                 ++p+++v+Dl ++ G+++  l++r    ++vv+v   p          a +   ++vt+++ +  +  t+++  ++    ++d v+ D a
  CTQ29587.1 284 LRPEDRVLDLFCGMGNFTLPLATRA---AHVVGVEGVPAlvekgrenaA-RnglSNVTFFHENLEEDVTRQAWAKH----GFDKVLLDPA 365
                 568899******************3...78******9999999998852.34569*****9999999999988864....6888888865 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00016      0.15      48      91 ..     272     314 ..     265     353 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
                 HHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEE CS
        CMAS  48 laKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvgl 91 
                 ++ ++++le l+l+p +++Ld+ cG G+ +   + r  ++vvg+
  CTQ29587.1 272 QQMVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATR-AAHVVGV 314
                 5668999*********************99999988.8999987 PP

>> TPMT  Thiopurine S-methyltransferase (TPMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00029      0.26      20      93 ..     268     341 ..     262     351 .. 0.84
   2 ?   -3.6   0.0       8.3   7.4e+03     175     196 ..     398     419 ..     395     428 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
                 SS--HHHHHHHHT..T-S--EEEEEET-TT-HHHHHH-BTTEEEEEE-S-HHHHHHHHHHHTTSGGGGGEEEE-- CS
        TPMT  20 eevnpllkkflda.lkakaglrvlvPlCGkaldlvwlAeqgrevvGvelselAvekffeeanlepkvkelsgvke 93 
                 ++vn+++++   + l + ++ rvl   CG +     lA +  +vvGve  ++ vek  +e+  +  ++++++++e
  CTQ29587.1 268 DGVNQQMVRTALEwLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEK-GRENAARNGLSNVTFFHE 341
                 5788887777666699********************************99999999.577777777888887777 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8.3
                 HHHHHGGTEEEEEEEETT--TT CS
        TPMT 175 leallsagfkvaeleeedalee 196
                  e+ll ag+++++l   d++++
  CTQ29587.1 398 SETLLQAGYQIQRLAMLDMFPH 419
                 5789999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3142.14
//
Query:       CTQ29588.1  [L=916]
Description: hybrid sensory histidine kinase, in two-component regulatory system with UvrY [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-53  179.3   0.1    8.5e-53  178.2   0.1    1.6  1  DUF2222       Uncharacterised signal transduction histidine k
    6.5e-32  110.4   0.3    1.1e-31  109.6   0.3    1.4  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    1.6e-27   95.9   1.8    1.6e-27   95.9   1.8    2.6  3  Response_reg  Response regulator receiver domain
    1.2e-19   70.1   7.2    2.9e-19   68.9   0.3    4.1  3  HisKA         His Kinase A (phospho-acceptor) domain
    3.5e-13   49.6   0.4    3.5e-13   49.6   0.4    2.7  2  Hpt           Hpt domain
    1.6e-06   28.3   2.5    1.8e-06   28.2   1.0    1.9  2  HAMP          HAMP domain
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.034   14.1   0.0    1.8  1  SelB-wing_1   Elongation factor SelB, winged helix
      0.032   14.0   0.0      0.074   12.9   0.0    1.5  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
      0.078   13.0   4.1       0.16   12.0   2.1    2.3  2  DUF1640       Protein of unknown function (DUF1640)


Domain annotation for each model (and alignments):
>> DUF2222  Uncharacterised signal transduction histidine kinase domain (DUF2222)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.2   0.1   4.3e-56   8.5e-53       2     148 .]      32     177 ..      31     177 .. 0.98

  Alignments for each domain:
  == domain 1  score: 178.2 bits;  conditional E-value: 4.3e-56
     DUF2222   2 nRyneLeeqLierGssiiepLAiaseyglttknreslkrLisalhrknselvrsIaiFdaenqlfvtsnyhkdfeslrlkegaelpeetevesledsli 100
                 +Ryn+L++qL ++G+siiepLA++seyg++ +nres+ +Lis lhr++se+vr+I+++d++n+lfvtsny+ + ++l+l++g+++p++++v + +d++i
  CTQ29588.1  32 HRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSEIVRAISVYDSHNRLFVTSNYQLNPSELQLPKGEAFPRHLSVIRDGDMMI 130
                 8************************************************************************************************** PP

     DUF2222 101 lrtPiisenesleeeaeeaeaksqqklLGYvaieldkesarleqyrei 148
                 lrtPi+se++s +e+  e++ak   ++LGYva+eld++s+rl+qy+ei
  CTQ29588.1 131 LRTPIVSESYSPDES-PESDAKMPGNMLGYVALELDLKSVRLQQYKEI 177
                 **********97776.999***************************96 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.3   5.6e-35   1.1e-31       1     111 [.     404     519 ..     404     520 .. 0.93

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 5.6e-35
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE...EE..TEEEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEE CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveika...se..ddlvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiw 93 
                 gd+ rL+qi+ nlv+Na+kf t+ g+i+v +++   s+  ++++i++ D+GiGip+ d+ +lf++f q d+s +r++ggtGlGl i ++lv+ mgG+i+
  CTQ29588.1 404 GDPLRLQQIVTNLVGNAIKF-TEHGNIDVLVEQraiSNsrVQIEIQIHDTGIGIPERDQSRLFQAFRQaDASISRRHGGTGLGLVITQRLVKEMGGDIS 501
                 7999****************.999*9*99999755511569************************************************9999****** PP

                 EEEETTTEEEEEEEEESS CS
   HATPase_c  94 vesepgrGttftftlple 111
                 ++s+p+rG+tf+f++ l+
  CTQ29588.1 502 FHSQPNRGSTFWFHISLD 519
                 **************9875 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.8   3.5e+03      12      45 ..     245     278 ..     241     281 .. 0.68
   2 ?   -2.5   0.0       2.9   5.7e+03      88     109 ..     622     643 ..     615     645 .. 0.75
   3 !   95.9   1.8     8e-31   1.6e-27       1     110 [.     669     779 ..     669     781 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.8
                   HHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHES CS
  Response_reg  12 ellrqlleeegyeevaeaedgkealellkeekvd 45 
                   + l+ + ee + ++ ++++d +e le+++ ++v 
    CTQ29588.1 245 MSLAAYHEEMQHNVDQATSDLRETLEQMEIQNVE 278
                   5566666667774555889999999998877754 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.9
                   HHHHCTESEEEESSG-HHHHHH CS
  Response_reg  88 ealkagaddflsKpfdpeeLlk 109
                   +  + g+  +l Kp++ ++Ll 
    CTQ29588.1 622 ALKRDGVAACLLKPLTTTRLLP 643
                   444679999******9999875 PP

  == domain 3  score: 95.9 bits;  conditional E-value: 8e-31
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT..TTSEEEEEESSTSHHHHHHHHHCTES CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed..pelpviiltahseeedavealkagad 95 
                   v+ vdD+p++++l+  ll++  + +v  +++g++a++++k+ ++dlil+Di+mp+mdG+++++ i+  +  +++pvi++tah+ e ++++ l+ag++
    CTQ29588.1 669 VMAVDDNPANLKLIGALLDDLVQ-QVILCDSGQQAVDKAKQLQMDLILMDIQMPDMDGIRACELIHHLShhQQTPVIAVTAHALEGQREKLLSAGMN 764
                   789****************8888.999**************************************87766699************************ PP

                   EEEESSG-HHHHHHH CS
  Response_reg  96 dflsKpfdpeeLlka 110
                   d+l+Kp+++e+L++ 
    CTQ29588.1 765 DYLAKPIEEEKLHAL 779
                   ************986 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.089   1.8e+02      19      51 ..     228     268 ..     227     287 .. 0.60
   2 !   68.9   0.3   1.5e-22   2.9e-19       2      67 .]     293     357 ..     292     357 .. 0.95
   3 ?   -0.7   0.1      0.74   1.5e+03       4      30 ..     730     756 ..     729     777 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.089
                 HHHHHHHHHHC..........T-HSSCHHHHHHHHHHHHHH CS
       HisKA  19 ailgnaeaLkre........gklteelkeyletiesearrl 51 
                 ++lg +++Lk+         +++ ee + +++++ s  r  
  CTQ29588.1 228 FMLGELDMLKNGinsmamslAAYHEEMQHNVDQATSDLRET 268
                 78899999988886666555555566666666555555532 PP

  == domain 2  score: 68.9 bits;  conditional E-value: 1.5e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHH.HHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaea.LkregklteelkeyletiesearrldhlvedlLdlsrieag 67 
                 +++fla+++HELrtPL++++g++ + Lk   +l+  +++ l tie++a+ l+++++d+Ld+s++eag
  CTQ29588.1 293 KSEFLANMSHELRTPLNGVIGFTRLtLKT--DLNATQRDHLTTIERSANNLLAIINDVLDFSKLEAG 357
                 79***********************5566..7*********************************97 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.74
                 HHHHHHHHHHHHHHHHHHHHHHHH..HC. CS
       HisKA   4 rflagvaHELrtPLsailgnaeaL..kre 30 
                 +++ +++H   tP+ a+  +a+aL  +re
  CTQ29588.1 730 ELIHHLSHHQQTPVIAV--TAHALegQRE 756
                 57889999999997555..5555522443 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3       3.1   6.1e+03      10      17 ..     265     272 ..     247     298 .. 0.52
   2 !   49.6   0.4   1.7e-16   3.5e-13       1      81 [.     826     906 ..     826     910 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.1
                 HHHHHHHH CS
         Hpt  10 aeelleql 17 
                 ++e leq+
  CTQ29588.1 265 LRETLEQM 272
                 22333333 PP

  == domain 2  score: 49.6 bits;  conditional E-value: 1.7e-16
                 HHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH.HCTSCHHHHHHHHHHHHHHHH CS
         Hpt   1 ellelfleeaeelleqleqaldqedlqelaraaHtLKGsagmlGltelaelahelEdlld.ragelelepellealkallea 81 
                 e+l+++++ ++e  +++e++l  e+ + l ++ H+L+Gs+++ G+++l++l+h+lE+ l+     ++lepelle+l+++ ++
  CTQ29588.1 826 EMLQMLIAFMPEVRNKVEEQLVGEQPEGLVDLIHKLHGSCSYSGVPRLKKLCHTLESQLRaGTAAEDLEPELLELLDEM-DN 906
                 79*******************************************************9988889999999999966664.54 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         8   1.6e+04      40      53 .]      30      43 ..      30      43 .. 0.85
   2 !   28.2   1.0   8.8e-10   1.8e-06       2      51 ..     198     247 ..     197     249 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 8
                HHHHHHHHHHHHHH CS
        HAMP 40 LarafNaMldrLre 53
                +a+ +N+++++L++
  CTQ29588.1 30 VAHRYNDLQRQLED 43
                58899****99985 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 8.8e-10
                 HHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldrL 51 
                 l+r ++ P+r+++ +++ri++G+ld+r++     E+++L   +N M+ +L
  CTQ29588.1 198 LMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247
                 8999*******************************************998 PP

>> SelB-wing_1  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.7e-05     0.034      11      43 ..     801     833 ..     797     836 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
  SelB-wing_1  11 vrehreGLdWqeaaaraaLsleetrkLLqdmaa 43 
                  + +h + LdWq a  +aa+ ++ +r +Lq + a
   CTQ29588.1 801 IVDHNQTLDWQLALRQAAMKPDLAREMLQMLIA 833
                  678**************************8765 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   3.7e-05     0.074       6      77 ..     412     486 ..     408     503 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.7e-05
  HATPase_c_3   6 AlaelvdNsld.Adaenvkievnknrgkt....geivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGl 77 
                   ++ lv N++   +  n+++ v+++  ++     ei+i D G G++e++  + ++  +++    + s+ +G  G+Gl
   CTQ29588.1 412 IVTNLVGNAIKfTEHGNIDVLVEQRAISNsrvqIEIQIHDTGIGIPERDQSRLFQAFRQADA--SISRRHGGTGLGL 486
                  58899999999888899***9997763332444899************99999987776666..3677778888875 PP

>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.1   8.1e-05      0.16      76     131 ..     246     300 ..     232     343 .. 0.83
   2 ?   -0.3   0.0      0.48   9.6e+02       9      44 ..     813     848 ..     806     851 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.1e-05
     DUF1640  76 alrseteklqreleklkqkLreeidklkadirldlnleKgrireelakleakiqel 131
                 +l + +e++q+++++ +++Lre +++++ + +++l+l K+r++e     ++ ++++
  CTQ29588.1 246 SLAAYHEEMQHNVDQATSDLRETLEQMEIQ-NVELDLAKKRAQEAARIKSEFLANM 300
                 5778899*********************98.9**********99776655555555 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.48
     DUF1640   9 rLeekGftkeqAeaimsaltevlneslekvakslvs 44 
                  L ++ ++++ A+ + ++l + + e  +kv+++lv 
  CTQ29588.1 813 ALRQAAMKPDLAREMLQMLIAFMPEVRNKVEEQLVG 848
                 688899999***********************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 5922.52
//
Query:       CTQ29589.1  [L=379]
Description: glycerate kinase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.6e-150  501.2   9.4   1.8e-150  501.0   9.4    1.0  1  Gly_kinase  Glycerate kinase family


Domain annotation for each model (and alignments):
>> Gly_kinase  Glycerate kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  501.0   9.4    1e-154  1.8e-150       1     365 [.       3     373 ..       3     374 .. 0.99

  Alignments for each domain:
  == domain 1  score: 501.0 bits;  conditional E-value: 1e-154
  Gly_kinase   1 iviapdsFkgslsaaevaeaiaegikkaapeaevvklplaDGGeGtvealvaalggelvevevtgplgrpveakyglledektAviEmAeasGlklvpe 99 
                 iviapds+k+slsa eva+ai++g++++ p+ae+vklp+aDGGeGtvea+vaa+gg lv+++vtgplg+pvea ygl++d++ A+iEmA+asGl+ vp+
  CTQ29589.1   3 IVIAPDSWKESLSALEVASAIEQGFREIYPDAEYVKLPVADGGEGTVEAMVAATGGLLVPLTVTGPLGEPVEAFYGLSGDRQCAFIEMAAASGLESVPP 101
                 8********************************************************99*********************99***************** PP

  Gly_kinase 100 eernplktttyGvGelikaaldkgarkiiigiGGSatnDgGaGmlqaLGvrfldadgkelepggaaLaklasidlskldprlkdveitvacDvtnpLlG 198
                 ++rnpl tt+ G+Geli++ald+g+r+iiigiGGSatnDgGaGm+qaLG+++l a+g++++ gg+aL++la idls+ld+rl+d++i vacDvtnpL+G
  CTQ29589.1 102 AQRNPLLTTSWGTGELIRHALDAGVRQIIIGIGGSATNDGGAGMAQALGAKLLTAEGQQIASGGGALETLALIDLSELDSRLADCRIDVACDVTNPLTG 200
                 *************************************************************************************************** PP

  Gly_kinase 199 eeGaaavFgpQKGatpeqveeldaalehlaevlkkdlg......pGaGAAGGlgaallaflgaelksGielvlelvgleeklkeadlviTGEGrlDsqt 291
                 ++Ga+avFgpQKGat++++++ld++l+h+a+++++dl       +G GAAGG+gaal+af+ga+l++Gie+v+++++l+e++++adlviTGEGr+Dsqt
  CTQ29589.1 201 PQGASAVFGPQKGATAQMIDRLDSGLRHYARIIARDLDidvlslEGGGAAGGMGAALYAFCGAQLRPGIEIVTDALQLAERVADADLVITGEGRIDSQT 299
                 ***********************************885678899******************************************************* PP

  Gly_kinase 292 lsGKvpvgvaklakkagvpvialaGsveedaeeleeagidavfsildgpesleealeeaaelleeaaeqvarll 365
                 ++GKvpvgva++ak+ +vpvi +aGs++ d   ++++g+davfs+l   ++l+eal++aa++l+ +a++va++l
  CTQ29589.1 300 IHGKVPVGVARVAKRFNVPVIGIAGSLTADVGVVHQHGLDAVFSVLYTICTLDEALANAAANLRMTARNVAAVL 373
                 **********************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2891.29
//
Query:       CTQ29590.1  [L=446]
Description: D-glucarate dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-36  125.9   0.2    2.4e-36  125.4   0.2    1.3  1  MR_MLE_C     Enolase C-terminal domain-like
     0.0046   17.2   0.1     0.0092   16.2   0.1    1.5  1  MR_MLE_N     Mandelate racemase / muconate lactonizing enzyme
     0.0051   17.2   0.0      0.091   13.1   0.0    2.2  2  Radical_SAM  Radical SAM superfamily


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.2     4e-40   2.4e-36       2     218 ..     188     405 ..     187     407 .. 0.92

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 4e-40
                 HHHHHHHHHHHHT-SEEEEETSSSHHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESSSST...TTHHHHHHHHHHHH CS
    MR_MLE_C   2 laeearelvaeqgfravKlkvggddvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEPvpp...eddleglaelrara 97 
                 +++ a++++++ gf+ +Klk g     e++e + a+ +++ p   +++ +D n+aw l++Ai+++++l+   l++ E+P+ +      +e +ae r ra
  CTQ29590.1 188 VVRLAEAAYEKYGFNDFKLKGGVLAGFEEAEAISALAKRF-PN--ARVTLDPNGAWLLEEAIQIGKQLKG-VLAYAEDPCGAeqgFSGREVMAEFR-RA 281
                 5678888999**********888899999***********.64..5**********************55.5**********33323477788888.66 PP

                 .SSEEEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCS.SHHHHHHHHHHHHTTTTBEEEEEEGGGGH.TSGCSB CS
    MR_MLE_C  98 .sipiaagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgs.gglglaaslhlaaaipnllileyfldael.leeell 193
                  ++p a+++ ++++ ++ + l+ + vdi  +d++ +  ++++++va+++++fg+++  Hs++ ++++la+ +h+aaa+p+   + ++++ ++  +++l+
  CTQ29590.1 282 tGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWT-MQGSVRVAQMCHEFGLTWGSHSNNhFDVSLAMFTHVAAAAPGKITAIDTHWIWQeGNQRLT 379
                 7***********************************6.**********************8669****************************9****** PP

                 SSSSEEETTEEECTSSSBTSSEB-.H CS
    MR_MLE_C 194 eeplevedGrvtvpdgpGlGveld.e 218
                 ++p+e++ G+v+vp++pGlGveld +
  CTQ29590.1 380 KQPFEIKGGMVQVPSTPGLGVELDmD 405
                 ************************44 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.5e-06    0.0092      31     117 .]      41     137 ..      27     137 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.5e-06
                 EEEEECTTEEEEEEEE-STTGHHHHHHHHHHHHHHHHTTSBTTHHHHHH.....HHHHHHCSS..........CHHHHHHHHHHHHHHHHHHTTSBHHH CS
    MR_MLE_N  31 vkietseGvvGigeatsvggraetikaelddhlapllvgkdaanisdla.....qllkravlg..........nmsAkaaidmAlwDlkakalnlplad 114
                 v i+ ++G +G+ge  + g   e+i + l+d  +pl+vgk + + +++      q+++r + g          +     +i+ Al+Dl+++ l++ +a 
  CTQ29590.1  41 VIIKDNAGHTGVGEI-PGG---EKIRQTLED-AIPLVVGKTLGEYKNVLgavrnQFADRDAGGrglqtfdlrtTIHVVTGIEAALLDLLGQHLGVNVAS 134
                 445556888999985.334...788888888.78999999887777654111224555555559999999998888999******************** PP

                 HTT CS
    MR_MLE_N 115 LlG 117
                 LlG
  CTQ29590.1 135 LLG 137
                 **9 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.5e-05     0.091      24      95 ..     178     247 ..     171     259 .. 0.87
   2 ?    1.5   0.0     0.056   3.4e+02     128     158 ..     405     438 ..     389     441 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.5e-05
                  HHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHGHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  24 grgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpdeekle 95 
                  ++++ ++++ +++++++++++ g + + l gg +l+  +++e++ +lak+  p+ r+t+  ng ++ ee ++
   CTQ29590.1 178 RHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGG-VLAGFEEAEAISALAKRF-PNARVTLDPNGAWLLEEAIQ 247
                  45699*************87777*********.9999************96.***********999666664 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.056
                  HHHHHHHHHHHHTTSET...EEEEEEEBTTTSHH CS
                  xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx RF
  Radical_SAM 128 eevlealeklreagikr...vvdrivglpGende 158
                  ++v++a e+++++g+        + +++pG++++
   CTQ29590.1 405 DRVMQANELYKKHGLGArddAMAMQYLIPGWTFD 438
                  899***********9999999**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3372.32
//
Query:       CTQ29591.1  [L=446]
Description: D-glucarate dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-39  134.0   0.2    8.9e-39  133.3   0.2    1.3  1  MR_MLE_C  Enolase C-terminal domain-like
    3.3e-08   33.7   0.2      6e-08   32.9   0.2    1.4  1  MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N


Domain annotation for each model (and alignments):
>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.2     1e-42   8.9e-39       3     219 ..     188     405 ..     186     406 .. 0.92

  Alignments for each domain:
  == domain 1  score: 133.3 bits;  conditional E-value: 1e-42
                 HHHHHHHHHHHT-SEEEEETSSSHHHHHHHHHHHHHHHHTTTSTSEEEEE-TTTSBHHHHHHHHHHHGGGTESEEESSSST...TTHHHHHHHHHHHH. CS
    MR_MLE_C   3 aeearelvaeqgfravKlkvggddvaedvervravreavgpgddvdlmvDanqawdlatAirvareleeldllwlEEPvpp...eddleglaelrara. 97 
                 ++ a++++++ gf+ +Klk g    +++++  ra+++++ p+  +++ vD n+aw l++Ai +++ l+++ l++ E+P+ +      +e +ae r ra 
  CTQ29591.1 188 VRLAEAAQDRYGFKDFKLKGGVLPGEQEIDTARALKKRF-PD--ARITVDPNGAWLLDEAIALCKGLQDV-LTYAEDPCGAeqgFSGREVMAEFR-RAt 281
                 67777788999********9999****************.75..5**********************885.9*********33323477788888.667 PP

                 SSEEEESTTSSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSCS.SHHHHHHHHHHHHTTTTBEEEEEEGGGGH.TSGCSBS CS
    MR_MLE_C  98 sipiaagEslysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvapHsgs.gglglaaslhlaaaipnllileyfldael.leeelle 194
                 ++p+a+++ ++++ ++ +++  +avdi  +d++ +  +++a++va+l++ +g+++ +Hs++ ++++la+ +++ aa+p+   + ++++ ++  +++l++
  CTQ29591.1 282 GLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWT-LSGAVRVAQLCDDWGLTWGCHSNNhFDISLAMFTQVGAAAPGNPTAIDTHWIWQeGDARLTK 379
                 ***********************************6.**********************8669*************************99999****** PP

                 SSSEEETTEEECTSSSBTSSEB-.HH CS
    MR_MLE_C 195 eplevedGrvtvpdgpGlGveld.ee 219
                 +pl++ +G+++vpd+pGlGveld e+
  CTQ29591.1 380 NPLQIINGSIAVPDAPGLGVELDwEQ 405
                 ***********************665 PP

>> MR_MLE_N  Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.2   6.7e-12     6e-08      30     117 .]      39     136 ..      16     136 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 6.7e-12
                 EEEEEECTTEEEEEEEE-STTGHHHHHHHHHHHHHHHHTTSBTTHHHHHHHHHHHHCSS...............CHHHHHHHHHHHHHHHHHHTTSBHH CS
    MR_MLE_N  30 lvkietseGvvGigeatsvggraetikaelddhlapllvgkdaanisdlaqllkravlg...............nmsAkaaidmAlwDlkakalnlpla 113
                 +v ++ ++G +G+gea   g   e i++ l +  +p++vg++ a+++ ++q +++   +                  A aa++ Al+Dl++++ln+p+ 
  CTQ29591.1  39 IVVLTDNAGHTGVGEAP-GG---EVIYQTLLA-AIPQVVGQEVARLNRVVQQVHKGNQAadfdtfgkgawtfelKVNAVAALEAALLDLLGQVLNVPVC 132
                 45556678999999974.34...678888887.68********************9999999***********999*********************** PP

                 HHTT CS
    MR_MLE_N 114 dLlG 117
                 +LlG
  CTQ29591.1 133 ELLG 136
                 ***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       282  (0.0157287); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3506.69
//
Query:       CTQ29594.1  [L=159]
Description: putative flavoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-23   82.1   0.0    4.9e-23   81.9   0.0    1.1  1  Flavodoxin_1  Flavodoxin


Domain annotation for each model (and alignments):
>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   2.8e-27   4.9e-23       1     135 [.      18     142 ..      18     150 .. 0.88

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 2.8e-27
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   i+ g+++Gn+  +A++   +l+  g++a+v++  ++++  ++  + +++lvvtsT+g+Gd+p+    + ++ +++            +r+ +++lGd
    CTQ29594.1  18 IFVGTMYGNSLLVAEEAEAILSGLGHKATVYEDPQVNDW-ESY-TGKYVLVVTSTTGQGDLPDSIV-PLYEGIKDM-------YQPHLRYGIIALGD 104
                   899**********************************96.555.56****************9988.555555554.......3479********** PP

                   TTSSSTTHHHHHHHHHHHHTTCEEESSSEEEETTSTHG CS
  Flavodoxin_1  98 sayenFcaagkkldekleelGaerllkllegdednqeg 135
                   s+y nFc  g k+d++l+e Ga+r++++l++d   + +
    CTQ29594.1 105 STYANFCGGGLKFDQLLQEQGAKRIGEMLKIDASEDPE 142
                   ********************************987544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1290.39
//
Query:       CTQ29595.1  [L=264]
Description: tRNA pseudouridine synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-29  101.2   0.0    7.7e-29  100.8   0.0    1.1  1  PseudoU_synth_2  RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   4.3e-33   7.7e-29       2     160 .]      11     170 ..      10     170 .. 0.97

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 4.3e-33
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      lv+vnKP+g  v++      ++ ++ +  + ++ +  +++ + hRLD++tsG+ll++ ssea + la++fe++++rK+Y a+v+ +   ee+ +
       CTQ29595.1  11 LVAVNKPSGWLVHRSW---LDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIRKRYHAIVR-GWLMEEALL 100
                      699*************...****************************************************************9.9999999** PP

  PseudoU_synth_2  96 kkkiskdtekqegarrkaeeldgkkavtylkvlksgs......seksakvslveleletGrkhQiRvhlaa 160
                      + ++++   ++   ++ +e+++ + avt+++ l+         ++  +++ lvele++tGrkhQ+R+hla+
       CTQ29595.1 101 DYPLVE-ELDRIADKFAREDKGPQPAVTHYRGLATVEmpvatgRYPTSRYGLVELEPKTGRKHQLRRHLAH 170
                      *****9.78888889999999**************99********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2177.92
//
Query:       CTQ29596.1  [L=109]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-34  116.2   0.9    5.8e-34  116.1   0.9    1.0  1  DUF446    tRNA pseudouridine synthase C


Domain annotation for each model (and alignments):
>> DUF446  tRNA pseudouridine synthase C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.9   3.2e-38   5.8e-34       2      98 .]       7     103 ..       6     103 .. 0.97

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 3.2e-38
      DUF446   2 vaelLeeleaeLrelelWqeeapseealastePFavdtlefeqWLqfvfiprmkalieaeapLPakvaiapmaeealkeeeeeaeellellkeldkl 98 
                 v+++L+++ea Lre+e+Wqe+ap+++a+as++PF++dtle+ +WLq+v+iprm++l+e+++pLP+++a+ap++e+al++++  +e++l+ l  ld+l
  CTQ29596.1   7 VRDRLRAIEALLRETEHWQETAPDSSAFASDKPFCLDTLEPLEWLQWVLIPRMHQLLESGQPLPQNFAVAPYYEMALDQAHPVRESMLAELLLLDAL 103
                 7899******************************************************************************9*******9999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 904.58
//
Query:       CTQ29597.1  [L=181]
Description: hypothetical protein CH1034_280202 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-68  227.4   0.0      1e-67  227.2   0.0    1.0  1  Syd         Syd protein (SUKH-2)
  ------ inclusion threshold ------
        0.1   12.9   0.0       0.18   12.2   0.0    1.5  1  N_NLPC_P60  NLPC_P60 stabilising domain, N term


Domain annotation for each model (and alignments):
>> Syd  Syd protein (SUKH-2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.2   0.0   1.1e-71     1e-67       2     175 .]       7     179 ..       6     179 .. 0.99

  Alignments for each domain:
  == domain 1  score: 227.2 bits;  conditional E-value: 1.1e-71
                 HHHHHHHHHHHHHHHHHHSSS-EESTTTTS--TTEEEE-SS.-EEE--EE--S-SS-HHHHHHCT----HHHHHHCCSEE---EEEEETTEEEEE---- CS
         Syd   2 eaLekfteryveayqeelgelprseeleglpSpcileeeeeeevqWkpvkreeaasldnvekaLeielhpdikafygtqfagdleakleggeleLlqvw 100
                 eaL++ft+ry++ +q+++++lprseel+g+pSpc+++++ e +v+W+p++++ a+++++ve+aL+i +++ ++++y+tqfagd++ ++ g++l+Llq+w
  CTQ29597.1   7 EALRAFTQRYCAVWQQQRHSLPRSEELYGVPSPCVVDTQGE-AVFWQPQPFSLAQNISAVERALDIVVQQPLHSYYTTQFAGDMSGRFAGETLTLLQTW 104
                 79***************************************.********************************************************* PP

                 SHHHHHHHHHHHHHHHHHHHHTT---EEEEEEESSTTEEEEEETTT--EEEEETTSS-EEEEESSHHHHHHH-EE CS
         Syd 101 needferLqeNligHllmkkrlkqsptlFiavtdeedelvsvdnlsGeVvleqvgkkkrevLadslaefLeeleP 175
                 +eedf+r+qeNligHl+++krlk+sptlFia++++e +++sv+nlsGeVv e++g++kr +L++sla fL++leP
  CTQ29597.1 105 SEEDFQRVQENLIGHLVVQKRLKLSPTLFIATLESELDVISVCNLSGEVVKETLGTAKRITLSPSLAGFLNHLEP 179
                 *************************************************************************98 PP

>> N_NLPC_P60  NLPC_P60 stabilising domain, N term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     2e-05      0.18      57      84 ..       4      31 ..       1      71 [. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2e-05
                HHHHHHHHHHHHHCGGGG-SS--S-HHH CS
  N_NLPC_P60 57 eqaaldeefrrryFaPWnqtklsvsaed 84
                ++a+  ++f++ry a+W+q++ s ++++
  CTQ29597.1  4 QTAEALRAFTQRYCAVWQQQRHSLPRSE 31
                678899***************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1362.85
//
Query:       CTQ29598.1  [L=281]
Description: NADPH-dependent 7-cyano-7-deazaguanine reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-48  161.5   0.0    1.6e-47  160.3   0.0    1.6  2  QueF_N    Nitrile reductase, 7-cyano-7-deazaguanine-reductase
    3.3e-33  113.7   0.0      1e-26   92.9   0.0    2.2  2  QueF      QueF-like protein


Domain annotation for each model (and alignments):
>> QueF_N  Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.3   0.0   1.8e-51   1.6e-47       1     110 []      21     131 ..      21     131 .. 0.99
   2 ?   -2.7   0.0       0.8   7.2e+03      74      98 ..     216     239 ..     200     250 .. 0.63

  Alignments for each domain:
  == domain 1  score: 160.3 bits;  conditional E-value: 1.8e-51
                 ------GGG--EEETHHHHHHTT--S.S-S-EEEEEEEEEEEEEE-TTS-EEEEEEEEEEETTSSEEE-HHHHHHHHHTTTT-B-S-HHHHHHHHHHHH CS
      QueF_N   1 YkeeYdpslLfpipRalkrdelglee.elpfvGaDiWtayElswLnakgkpqvaiaelevpaesenliEsksfklYlnsfnqtrfesaeeveetlekDl 98 
                 Y+++Yd+slL+ +pR+l+rd lgl++ +lpf+GaDiWt+yElswLn kg+pqva++++e+p +s nl+EsksfklYlnsfnqtrf+s+++v+etl++Dl
  CTQ29598.1  21 YRDTYDASLLQGVPRSLNRDPLGLHAdNLPFHGADIWTLYELSWLNGKGLPQVAVGHVELPDTSLNLVESKSFKLYLNSFNQTRFASWQDVAETLTRDL 119
                 99***********************99************************************************************************ PP

                 HHHHTS--EEEE CS
      QueF_N  99 saaagaevkvel 110
                 sa+a+++vkv+l
  CTQ29598.1 120 SACAQGKVKVSL 131
                 *********986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.8
                 HHHHTTTT-B-S-HHHHHHHHHHHH CS
      QueF_N  74 lYlnsfnqtrfesaeeveetlekDl 98 
                  Yl sf +++  + + ve+++ +D+
  CTQ29598.1 216 RYLVSFRHHNEFHEQCVERIF-NDI 239
                 588888776655555554444.444 PP

>> QueF  QueF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.8e-07    0.0017      15      52 ..      86     124 ..      80     130 .. 0.81
   2 !   92.9   0.0   1.1e-30     1e-26       1      77 [.     195     269 ..     195     272 .. 0.98

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.8e-07
        QueF  15 kvvelkslklYlisfrnrg.ifhEevvnrilddlvealk 52 
                 ++ve+ks+klYl+sf +   ++  +v ++++ dl + ++
  CTQ29598.1  86 NLVESKSFKLYLNSFNQTRfASWQDVAETLTRDLSACAQ 124
                 58*************886526788999999999987665 PP

  == domain 2  score: 92.9 bits;  conditional E-value: 1.1e-30
        QueF   1 PDfatlvirYvpdkkvvelkslklYlisfrnrgifhEevvnrilddlvealkPkwlevvgdfnpRGgididvvvete 77 
                 PD+++++i+Y + k  ++++ l++Yl+sfr++++fhE++v+ri++d+++ ++P+ l+v++++++RGg+di+++++++
  CTQ29598.1 195 PDWGSVQIQYRGAK--IDREQLLRYLVSFRHHNEFHEQCVERIFNDILRFCQPESLSVYARYTRRGGLDINPWRSNG 269
                 9*************..*********************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1927.53
//
Query:       CTQ29599.1  [L=455]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-55  186.3   0.0    3.2e-55  185.4   0.0    1.5  1  DUF3412          Domain of unknown function (DUF3412)
    1.9e-46  156.4   0.1      4e-46  155.4   0.1    1.6  1  DUF4478          Pyrimidine/purine nucleotide 5'-monophosphat
    7.6e-35  119.9   0.0    1.2e-34  119.3   0.0    1.3  1  Lysine_decarbox  Possible lysine decarboxylase
    1.8e-05   24.4   0.0    3.2e-05   23.6   0.0    1.3  1  LDcluster4       SLOG cluster4 family


Domain annotation for each model (and alignments):
>> DUF3412  Domain of unknown function (DUF3412)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.4   0.0   7.1e-59   3.2e-55       1     121 []     333     454 ..     333     454 .. 0.98

  Alignments for each domain:
  == domain 1  score: 185.4 bits;  conditional E-value: 7.1e-59
     DUF3412   1 lkevkearketedaysfnwslkieeelqepfepthenmanLnLsrdqekeeLaanLRraFsgivagnvKeegikaieekgpfklkgdkellkkldkllk 99 
                 +  vke+r+et+daysfnws++i+++lq pf+pthenmanL+Ls dq+ e Laa+LRraFsgivagnvKe gi+aie+ gp+kl+gd+e+++++d+ll+
  CTQ29599.1 333 MPLVKESRRETDDAYSFNWSIRISPDLQMPFDPTHENMANLKLSPDQPVEVLAADLRRAFSGIVAGNVKEVGIQAIEQYGPYKLHGDPEMMRRMDDLLQ 431
                 5679*********************************************************************************************** PP

     DUF3412 100 sfveqkRmklp.gsayepcYeiv 121
                  fv+q+Rmklp g+ay pcYei+
  CTQ29599.1 432 GFVAQHRMKLPgGTAYIPCYEII 454
                 ***********99********95 PP

>> DUF4478  Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   0.1   8.9e-50     4e-46       2     107 ..       4     109 ..       3     111 .. 0.98

  Alignments for each domain:
  == domain 1  score: 155.4 bits;  conditional E-value: 8.9e-50
                 EE--SSS-----HHHHHTTSTSSSCHHHHHHHHHHHHHHTTT----SSSTTCGTTTT-EEEEEEETTEEEEEEES--GGGEETTEE-HHHHHHHHHHHH CS
     DUF4478   2 kispkgslellsqleverlkdsseselyelfRncalavLnsgsetDdskellekykdFdikvlqkerGiklelknaPasafvdgklirgikehlfavlR 100
                 ++sp gs+++lsqlev++lk++++s+ly+lfRnc+lavLnsgs tD+skell+++++F+i+vl++erG+klel+n+P++afvdg++ir+++ +lfavlR
  CTQ29599.1   4 HVSPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFEINVLRRERGVKLELINPPEDAFVDGRIIRSLQANLFAVLR 102
                 79************************************************************************************************* PP

                 HHHHHHC CS
     DUF4478 101 Dilyvee 107
                 Dil+v  
  CTQ29599.1 103 DILFVYG 109
                 ****975 PP

>> Lysine_decarbox  Possible lysine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.0   2.7e-38   1.2e-34       1     132 []     190     329 ..     190     329 .. 0.95

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 2.7e-38
                      HHHHHHHHH..HTTS-.....EEEEEECCHHHHHCCTTT-SEEEEESSHHHHHHHHHHHESEEEE-S-SHHHHHHHHHHHHHHHTTSS...-S. CS
  Lysine_decarbox   1 meavakgal..eaggr.....viGiipkillaeeapneevnelvivedmeeRkealveladafvilPGGiGTleElleiltliqlgkh...qkv 84 
                      mea++kga+  +a++r     +iG+++++++a+e pn+ vnel+i++d+e+R+ea+v+ a++++i+PGG+GT+eEll++l+ i +++    q +
       CTQ29599.1 190 MEAPMKGAAvgHAQQRykdsrFIGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLG-ILMHPDnkaQVL 282
                      9999**999888888899999************************************************************.667766678999 PP

                      EEEEEEGGG...CCHHHHHHHHHHHHTTSS-GGGGG.CEEEESSHHHHHHHH CS
  Lysine_decarbox  85 Piillnpkg...yydkllefletlveegtisekare.liivvddpeevlekl 132
                      P+il++pk+   y++ l+ef+     ++t++e+ar+ + i++ddp+ev++++
       CTQ29599.1 283 PLILTGPKEsadYFRVLDEFI-----THTLGESARRhYRIIIDDPAEVARQM 329
                      ********99***********.....89*****9999************997 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   7.1e-09   3.2e-05       9     114 ..     156     266 ..     149     270 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 7.1e-09
  LDcluster4   9 saeteakeealelaeelGrliAkegavlltGgrtGvmeaaskG.......akeagGltvGilpas.sekehsnk.yvdiiiyTGlglagRnlilvlssd 98 
                  ++  ++e+++  a+++G  +  +++++ tG  +G mea  kG        + ++   +G++  s  + e  n+ + ++ii+ +++ + R    v+ ++
  CTQ29599.1 156 GHS--INENEYLYARRVGTQLGLRELNICTGCGPGAMEAPMKGaavghaqQRYKDSRFIGMTEPSiIAAEPPNPlVNELIIMPDIE-K-RLEAFVRIAH 250
                 444..56777889******************************77777555667899****96640445555555559******99.4.999******* PP

  LDcluster4  99 vviaiggrsGTlsEia 114
                  +i+ +g++GT++E+ 
  CTQ29599.1 251 GIIIFPGGVGTAEELL 266
                 **************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3489.54
//
Query:       CTQ29600.1  [L=429]
Description: putative serine transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.065   12.9   0.1      0.065   12.9   0.1    2.7  2  DUF3961   Domain of unknown function (DUF3961)
      0.071   13.2   0.1       0.13   12.3   0.1    1.5  1  ELK       ELK domain


Domain annotation for each model (and alignments):
>> DUF3961  Domain of unknown function (DUF3961)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   7.2e-06     0.065      12      31 ..      20      40 ..      18      43 .. 0.86
   2 ?   -5.3   3.1         2   1.8e+04      28      34 ..     261     267 ..     257     269 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.2e-06
     DUF3961 12 KeDrvWFYGFYGiAvSi.VLF 31
                K D +W  G YG+A+   VLF
  CTQ29600.1 20 KTDTMWMLGLYGTAIGAgVLF 40
                89*************644888 PP

  == domain 2  score: -5.3 bits;  conditional E-value: 2
     DUF3961  28 iVLFmVF 34 
                  V+F VF
  CTQ29600.1 261 TVMFFVF 267
                 5899999 PP

>> ELK  ELK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.5e-05      0.13       7      16 ..     400     409 ..     400     410 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.5e-05
         ELK   7 LrKYsGyLss 16 
                 +rKYsG++s+
  CTQ29600.1 400 MRKYSGHISN 409
                 8********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3003.71
//
Query:       CTQ29601.1  [L=455]
Description: L-serine deaminase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-94  315.1  11.0    5.3e-94  314.7  11.0    1.1  1  SDH_alpha  Serine dehydratase alpha chain
    6.1e-56  189.1   0.1    1.1e-55  188.2   0.1    1.4  1  SDH_beta   Serine dehydratase beta chain
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.068   12.9   0.0    2.1  1  CT_C_D     Carboxyltransferase domain, subdomain C and D
      0.027   13.0   2.0      0.043   12.3   2.0    1.2  1  MmgE_PrpD  MmgE/PrpD family


Domain annotation for each model (and alignments):
>> SDH_alpha  Serine dehydratase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.7  11.0   1.2e-97   5.3e-94       2     260 .]     184     448 ..     183     448 .. 0.93

  Alignments for each domain:
  == domain 1  score: 314.7 bits;  conditional E-value: 1.2e-97
   SDH_alpha   2 kgleilelvteneeeaakrlsaeeidakleeiwevmdeaieeglsnkaiaeegllpgelkvkr.ayaalgkrl..........l...dklsaaAlavae 86 
                 +gl+++ l+++ne  a+ + s+e +++++  +wevm + ie+g++    + eg+lpg+l+v r a aal++ l          +   d+++++Alav+e
  CTQ29601.1 184 TGLSLSGLMMQNE-LAL-H-SKEALEQHFAAVWEVMSAGIERGIT----T-EGVLPGKLRVPRrA-AALRRMLvsqdttnsdpMavvDWINMFALAVNE 273
                 68999999***99.888.5.599********************98....6.***********967.8999999555555444415558*********** PP

   SDH_alpha  87 mnaaggrvvtaptsGaaGilPavlvalleelkas..eellraLllaaligilikrnasisgAecGcqaevGvacamAAaglaallggspeqienAaeia 183
                 +naaggrvvtapt+Ga+Gi+Pavl+++ + +++   ++l+r++l+a++ig+l+k nasisgAe+Gcq+evGvac+mAAagla+llggsp q++ Aaeia
  CTQ29601.1 274 ENAAGGRVVTAPTNGACGIVPAVLAYYDKFIRKVnsNSLARYMLVASAIGSLYKMNASISGAEVGCQGEVGVACSMAAAGLAELLGGSPGQVCIAAEIA 372
                 **************************9985544499*************************************************************** PP

   SDH_alpha 184 lehllGltCDpvaGlvkipCiernalgavkAvtaarlalagdggegivsldevietmrntgkdmsekyketseggLa 260
                 +eh+lGltCDpvaG v++pCierna++avkAv+aar+al+ ++ e +v ld+vietm++tgkdm++ky+ets+ggLa
  CTQ29601.1 373 MEHNLGLTCDPVAGQVQVPCIERNAIAAVKAVNAARMALRRTS-EPRVCLDKVIETMYETGKDMNAKYRETSRGGLA 448
                 *****************************************88.*******************************97 PP

>> SDH_beta  Serine dehydratase beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.2   0.1   2.5e-59   1.1e-55       1     154 [.       3     155 ..       3     156 .. 0.98

  Alignments for each domain:
  == domain 1  score: 188.2 bits;  conditional E-value: 2.5e-59
                 XXXXXXXXXXXXX-TTTHHHHHHHHHHHHHHHHTT-TTT--EEEEEEEHHHHHS-TTSSHHHHHHHHHTT--TTTS-GGGHHHHHHHHHHHTEEEETT. CS
    SDH_beta   1 SvfdlfkiGiGPSSShTvgpmraaaaFveelkekelleevarirveLyGsLaatgkghgtdeAvllGLegeepetvdpdavesrleeieeekklklag. 98 
                 Svfd+fkiGiGPSSShTvgpm+a+++F+++l +++ll+ev+++ v++yGsL++tgkgh+td A+++GL+g+ p+tvd+da++  +++++++++l la+ 
  CTQ29601.1   3 SVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARGLLAEVSKVVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDAIPGFIQDVNTHGRLMLANg 101
                 9***********************************************************************************************998 PP

                 TEEEE--HHHHEEEETT---SS-SSEEEEEEE-TTS-EEEEEEEEEETTTEEEETT CS
    SDH_beta  99 ekeiefdeeedivlekkkslplhsnglelsaldeegellleetyySiGGGfiveee 154
                 ++e++f  ++ + ++++ +l+lh+ng++++al++++ +l+++tyySiGGGfiv+ee
  CTQ29601.1 102 QHEVDFPVDQCMNFHAD-NLSLHENGMRITALAGDK-VLYSQTYYSIGGGFIVDEE 155
                 9**************98.9*************9997.****************997 PP

>> CT_C_D  Carboxyltransferase domain, subdomain C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.5e-05     0.068     109     156 ..     197     244 ..     151     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
                 HTS-HHHHHHHHHHS-EEEEEE-SSTT-EEE----GGG-----SS--S CS
      CT_C_D 109 nglsveevirlhtaaeyrvaflGfapGfaylggldprlavpRrasPrt 156
                 + l+ +e  + h+aa + v+  G   G+   g l+ +l+vpRra +  
  CTQ29601.1 197 LALHSKEALEQHFAAVWEVMSAGIERGITTEGVLPGKLRVPRRAAALR 244
                 345689999**********************************98755 PP

>> MmgE_PrpD  MmgE/PrpD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.0   9.7e-06     0.043      99     217 ..     289     412 ..     282     434 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.7e-06
                 GGGGHHHHHHHHHHHHHH..BHHHHHHHHHHHHHHHHHCCC-..-SCCCT.B-THHHHHHHHHHHHHHHTT--HHHHHHHHHHHHCT-B-BSGGGSTTT CS
   MmgE_PrpD  99 psdvlpaalAvAealgas..gkdlLtAivvGyEvqgrlglal..sfnhygfhdtvtlgtfgaaaaaakLlgLdaeqianAlgiaatqaaglrqyrhagt 193
                 +  ++pa+lA  ++  ++  +  l + + v+  ++    + +  s +++g    v +    aaa+ a Llg ++ q+  A  ia+ ++ gl +   ag 
  CTQ29601.1 289 ACGIVPAVLAYYDKFIRKvnSNSLARYMLVASAIGSLYKMNAsiSGAEVGCQGEVGVACSMAAAGLAELLGGSPGQVCIAAEIAMEHNLGLTCDPVAGQ 387
                 556899999999999888756888888888888887765554116667774444445555688999***************************998888 PP

                 --CHH.CHHHHHHHHHHHHHHHHHT CS
   MmgE_PrpD 194 kskkl.waaGdAarnGveaallAkr 217
                  +  +    + Aa ++v+aa +A r
  CTQ29601.1 388 VQVPCiERNAIAAVKAVNAARMALR 412
                 888888****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3595.60
//
Query:       CTQ29602.1  [L=313]
Description: putative aliphatic sulfonates-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-17   62.4   0.4    7.9e-17   61.8   0.4    1.2  1  NMT1_2          NMT1-like family
    6.4e-17   62.2   0.0    8.6e-17   61.8   0.0    1.1  1  NMT1            NMT1/THI5 like
    1.3e-12   47.9   0.6    1.7e-12   47.5   0.6    1.1  1  OpuAC           Substrate binding domain of ABC-type glycine 
    7.2e-09   35.4   0.0    1.2e-08   34.6   0.0    1.4  1  SBP_bac_3       Bacterial extracellular solute-binding protei
    1.1e-07   31.5   0.0    1.5e-07   31.1   0.0    1.2  1  NMT1_3          NMT1-like family
    1.1e-07   31.7   0.1    1.6e-07   31.2   0.1    1.3  1  Phosphonate-bd  ABC transporter, phosphonate, periplasmic sub
  ------ inclusion threshold ------
       0.06   12.7   0.0       0.27   10.5   0.0    1.9  2  HEM4            Uroporphyrinogen-III synthase HemD


Domain annotation for each model (and alignments):
>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.4   3.1e-20   7.9e-17       4     249 ..      24     248 ..      22     252 .. 0.83

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 3.1e-20
      NMT1_2   4 ekeqlklGfialtdaapl.vvakekglfakeGltvelekqaswaelrdkllagelDaahvltpapllidlGiggakadmkvlaslnlnG..qaitlsnk 99 
                  +e++++G+++    a l      ++  +k+G+ v+++++ +++++++ l  g++D+a+    ap ++ +     +ad+  la    n+   ai+++++
  CTQ29602.1  24 APETVNIGYQKANIFALLkYRGTLDESLKKQGIAVRWVEFPAGPQMLEGLNVGSIDLAAT-GDAPPAFAQAA---QADLVYLAHSPANPktEAIVVPEQ 118
                 5677888888877777774444556667888****************************9.66677777776...688998887766662268999986 PP

      NMT1_2 100 lkdkkvsdakalkdlvakkkaskplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvtalts 198
                       s   +++dl       k+ +++   +gs  ++ll  +L++aGl   +d++ v +pp+++ a++++g id+++  +P+ a  + +   +++   
  CTQ29602.1 119 ------SAIHSVADL-------KGKRVGL-NKGSDVNYLLVAALEKAGLSY-KDITPVYLPPADARAAFQRGAIDAWVIWDPFLAEVETNAKARQIRNA 202
                 ......777777777.......6779999.99******************9.************************************77777999999 PP

      NMT1_2 199 qelwkdhPekvlgvredfveknpntaralvkalleAtkwldakkenraeaa 249
                 + l +   +++  ++++f++ +p+ta+++v+ l + + w +    +++eaa
  CTQ29602.1 203 EGLVPH--YTFYLASRKFADTYPETAKQVVDELGKLSAWANS---HQDEAA 248
                 999555..66677899*************************5...334444 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   3.4e-20   8.6e-17      17     216 .]      52     247 ..      51     247 .. 0.88

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 3.4e-20
                 HHTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S-.-EEEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHH CS
        NMT1  17 keeGldVeivepadpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqep.lsglivlkdsgikspkDLkGkrigyvgspfekallkallak 114
                 k++G+ V+ ve     + +e ++ g  d++ +     + a+a+++++v +a    +p +++++v ++s i+s++DLkGkr+g+++++  ++ll a l+k
  CTQ29602.1  52 KKQGIAVRWVEFPAGPQMLEGLNVGSIDLAATGDAPPAFAQAAQADLVYLAHSPANPkTEAIVVPEQSAIHSVADLKGKRVGLNKGSDVNYLLVAALEK 150
                 79******9999999**************9999999999************998887255666666666****************************** PP

                 TT--GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHHHTT--EEEE-GGGTT-----SEEEEEEHHHHHH-HHHHHHHHHHHHHHHHHHHHSH CS
        NMT1 115 dggdpsdvtlvnvggtslakalltgkvDaaiggyenwegvelesegkelrifaladlgvpdyyslvlitnekllkenpelvkkFlrAlkkGyeyalahP 213
                 +g++++d+t v     ++ +a+ +g +Da++  +++  + e+e  +k ++i +++ l +   + + + ++ k++++ pe++k++++ l k  ++a  h 
  CTQ29602.1 151 AGLSYKDITPVYLPPADARAAFQRGAIDAWV--IWDPFLAEVETNAKARQIRNAEGLVP---HYTFYLASRKFADTYPETAKQVVDELGKLSAWANSHQ 244
                 ****************************998..55545555556666667767776666...66899******************99999999999999 PP

                 HHH CS
        NMT1 214 eea 216
                 +ea
  CTQ29602.1 245 DEA 247
                 987 PP

>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.6   6.6e-16   1.7e-12      22     227 ..      49     234 ..      27     254 .. 0.85

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 6.6e-16
                 HHHHHTTEEEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHHHHHHHHHHHHHHEEEEEEEESEE.ECEEEEEEHHHHHHHTTTBHHHHCTHHGGTEEEE CS
       OpuAC  22 qllekkGykveltnlgstavlfaalasGdiDvypeewtgtayeaykkaveekkglevlgplgag.nteglavpkyvaekygiksisDLkkpaedlelga 119
                 + l+k+G++v+++++ +++ + ++l  G+iD+++   tg a  a+++a++++ + +  ++++a+  te+++vp+     + i+s++DL           
  CTQ29602.1  49 ESLKKQGIAVRWVEFPAGPQMLEGLNVGSIDLAA---TGDAPPAFAQAAQADLVYL--AHSPANpKTEAIVVPEQ----SAIHSVADL----------- 127
                 67999*****************************...9***9*****888555555..66666525789999955....6********........... PP

                 EHHCCHSTTSHHCCHHHHHHHHHHT-TTCEEEGSCEEEEHH..HHHHHHHTTCSSEEEEETTSTHHHHT..TEEE-B-TTSTS-SSEEEEEEEEHHHHH CS
       OpuAC 120 kgeflgrpdgwgcekvtegllkaYgldkvelvegseaamda..elyaaykrgepvvvyawtPdwaikky..dlvvLedpkglfppaynvvpvvrkefae 214
                 kg+ +g + g+ ++++  ++l++ gl +++++   +    +  ++ aa++rg +++  +w P  a  +   + + + + +gl p   +  ++++++fa+
  CTQ29602.1 128 KGKRVGLNKGSDVNYLLVAALEKAGL-SYKDI-TPVYL--PpaDARAAFQRGAIDAWVIWDPFLAEVETnaKARQIRNAEGLVPH--YTFYLASRKFAD 220
                 99************************.78887.33333..3359********************99988667999********99..56677888**** PP

                 HSCT.HHHHHHHHC CS
       OpuAC 215 kaPe.vaafLekls 227
                  +Pe +++++++l 
  CTQ29602.1 221 TYPEtAKQVVDELG 234
                 ****9999988865 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   4.8e-12   1.2e-08      34     186 ..      52     210 ..      46     238 .. 0.76

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 4.8e-12
                 HHCT-EEEEEE-.SGGGHHHHHHTTSSSEEESSEB-....-HHHHT.TEEEESESEEEEEEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSHHHHHHH CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx....xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  34 krlgvkvefvpv.swdelipalksgkvDiaiaaiti....tpeRee.kvdFsqpyfsagqvllvrkkdaskissiksladLkgkkvgvqagstaeellk 126
                 k++g+ v +v++    +++++l+ g +D+a+++ +     +++ +  +++   p    +++++v++++      i s+adLkgk+vg  +gs    ll 
  CTQ29602.1  52 KKQGIAVRWVEFpAGPQMLEGLNVGSIDLAATGDAPpafaQAAQADlVYLAHSPANPKTEAIVVPEQS-----AIHSVADLKGKRVGLNKGSDVNYLLV 145
                 7899999999988999**************9974442222444444156666699999*******764.....599999************99664544 PP

                 HHHHC....TSEEEE.ESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEEECGGCECE CS
                 xxxxx....xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 127 eelkk....gaeive.fdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlveeplssee 186
                  +l+k      +i++ +   ++a +a + g +da+v  +p la++ ++ ++ ++  +e+ +  + 
  CTQ29602.1 146 AALEKaglsYKDITPvYLPPADARAAFQRGAIDAWVIWDPFLAEVETNAKARQIRNAEGLVPHYT 210
                 444445666667775488999***********************999999888877544444444 PP

>> NMT1_3  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0     6e-11   1.5e-07      72     167 ..      89     183 ..      73     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 6e-11
      NMT1_3  72 efegkkplknlraitml..yaevfqlvvskdsgigsiadlkgkrvsvGpegsGtegsarailealglsekdlklleelgygesadalkdgqldgaalv 167
                  f++ + +++l +++    +++++++vv ++s i+s+adlkgkrv++ ++gs  +    a le +gls+kd+++  +l ++++  a+++g +d+ ++ 
  CTQ29602.1  89 AFAQ-AAQADLVYLAHSpaNPKTEAIVVPEQSAIHSVADLKGKRVGL-NKGSDVNYLLVAALEKAGLSYKDITP-VYLPPADARAAFQRGAIDAWVIW 183
                 4665.567777777765337788***********************9.5599999999**************97.9*****************98875 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1   6.1e-11   1.6e-07      40     174 ..      67     193 ..      44     249 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 6.1e-11
                     HHHHHHHHTTS-SEEE--HHHHHHHH.HHS-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE--TT-TTTTHHHHHHTCCCCT-- CS
  Phosphonate-bd  40 aavvealragqvDiaflgplayvqar.dqagveplatrvrsdGsasyrsviivradsdiqsledLkgktiafvspsStsGylvpaalLvkeagld 133
                      ++ e+l  g++D+a +g  + + a+ +qa+++ la + +    +    +i+v+++s+i+s++dLkgk++++   s +  yl+ aa L ++agl 
      CTQ29602.1  67 PQMLEGLNVGSIDLAATGDAPPAFAQaAQADLVYLAHSPA----NPKTEAIVVPEQSAIHSVADLKGKRVGLNKGSDVN-YLLVAA-L-EKAGLS 154
                     6899**************9977666624579999999998....788899**********************8777766.999999.9.9***** PP

                     HHHHSSEEEE--HHHHHHHHHTTSSSEEEEEHHHHHHHHHH CS
  Phosphonate-bd 134 peddfsevfsgshdaavlavlsgdadaaavsadaledlvae 174
                       +d+++v+    d a +a  +g +da ++++ +l +++ +
      CTQ29602.1 155 Y-KDITPVYLPPAD-ARAAFQRGAIDAWVIWDPFLAEVETN 193
                     7.589***997555.677889**********9999888744 PP

>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.32   8.2e+02     122     146 ..      37      61 ..      16      63 .. 0.73
   2 ?   10.5   0.0   0.00011      0.27     114     174 ..     126     181 ..      74     183 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.32
                 E-SS.S--HHHHHHHHHTTEEEEEE CS
        HEM4 122 llrgeiarddlaegLeergaevdev 146
                 +++  + r +l e L+++g+ v+ v
  CTQ29602.1  37 IFALLKYRGTLDESLKKQGIAVRWV 61 
                 5555567899999*****9999755 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00011
                 ---EEEEEE-SS.S--HHHHHHHHHTTEEEEEE-SEEEEE-HHHHHHHHHHHHTT--SEEE CS
        HEM4 114 slagkrvlllrgeiarddlaegLeergaevdevevYetvpaeeepeelkealkagevdavv 174
                 +l+gkrv l +g +++  l+++Le++g++++++++         p+++++a+++g++da v
  CTQ29602.1 126 DLKGKRVGLNKGSDVNYLLVAALEKAGLSYKDITPVYL-----PPADARAAFQRGAIDAWV 181
                 78999****************************97666.....688999999999998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2652.63
//
Query:       CTQ29603.1  [L=407]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-09   38.4   0.1    3.1e-09   36.9   0.1    1.8  2  Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
    2.9e-06   27.6  12.6    3.3e-06   27.4  10.9    1.9  2  Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
    5.1e-05   23.9   0.0    0.00014   22.5   0.0    1.7  1  Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
  ------ inclusion threshold ------
       0.08   13.2   0.1       0.35   11.1   0.0    2.2  3  ArgoMid        Mid domain of argonaute


Domain annotation for each model (and alignments):
>> Acyl-CoA_dh_M  Acyl-CoA dehydrogenase, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.1   6.8e-13   3.1e-09      12      95 ..     130     209 ..     120     211 .. 0.83
   2 ?   -3.7   0.0       3.1   1.4e+04      64      83 ..     245     265 ..     241     271 .. 0.60

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 6.8e-13
                    -GGG---EEEEETT.EEEEEEEEEEEETTTT-SEEEEEEETS-------EEEEEEE..GGGEEE-----BSS-TTS-EEEEEEE CS
  Acyl-CoA_dh_M  12 dvasvkttaaerdggeyvlnGeKiwitnaaiatlalvlartekpdrarglslflvprdapgvsvrrieeklGlrglptgelvfe 95 
                     + +v+t  ++ ++g+++l+GeK ++t+a +a+++ v+ar  +++ a ++ ++lv ++++gv  ++ ++  G+r + +g  +f+
     CTQ29603.1 130 KLGEVNT-RVTPAEGGWRLDGEKFYSTGALYADWIDVFAR-RSDT-ASDV-IALVSTQQTGVVREDDWDGFGQRLTGSGTTRFT 209
                    5788999.55666669************************.4444.5566.99*********************9999999986 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.1
                    EEEE..GG.GEEE-----BSS CS
  Acyl-CoA_dh_M  64 flvprdap.gvsvrrieeklG 83 
                    ++v+rda  gv++r    ++G
     CTQ29603.1 245 LAVERDAAqGVKHRSRMYSHG 265
                    567755544888854434455 PP

>> Acyl-CoA_dh_2  Acyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2   9.1e+03      39      64 ..      71      96 ..      61     103 .. 0.71
   2 !   27.4  10.9   7.3e-10   3.3e-06      16     130 ..     249     374 ..     236     376 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
                   HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2 39 atqlalaeaaarldAAralleraaar 64
                   a+ ++la+a ++l +A + + + +++
     CTQ29603.1 71 ALLIELAQADSNLPQALRAHFAFVED 96
                   55677888888887777666666655 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 7.3e-10
                    HHHHHHHHHHHC...TTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...........HHTT----HHHHHHHHHHHHHHHHHHHHH CS
  Acyl-CoA_dh_2  16 aefvelarervr...assgekladdpatqlalaeaaarldAAralleraaaraeal...........aaagkevtvedraearraaalavelaiaa 97 
                     ++++ +++r+r    ++++  +dd  + + ++++++   A ra++++aa++ +++           +a+++++      ea+ a++ a++   +a
     CTQ29603.1 249 RDAAQGVKHRSRmysHGNAAVPRDDAQVLQVVGQISSWAWATRATVLQAAESLQQAyvahvsddealIARRNQL---AEVEAAQAQVIASDWIPRA 341
                    56677788888843333333446888888899***999999999999999999988888874443333333333...4456677799********* PP

                    HHHHHHHCGGGGGBTT-HHHHHHHHHHHHCTSG CS
  Acyl-CoA_dh_2  98 vdalfeaaGgsalrkesplqRlwRDahaaaaHa 130
                    + +lf+a G+s +r+   l+R+wR+a+++a+H 
     CTQ29603.1 342 ATELFNALGASDTRTRLALDRHWRNARTVASHN 374
                    ********************************5 PP

>> Acyl-CoA_dh_N  Acyl-CoA dehydrogenase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   3.2e-08   0.00014      17     113 .]      22     117 ..       9     117 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.2e-08
                    HHTHHHHHHHHHHTSGHHHHHHHHHHTTCTSTTS-GGGTS--S-HHHHHHHHHHHHHH-HHHHHHHHHHHHTTHHHHHHHS-HHHHHHHHHHHHTT CS
  Acyl-CoA_dh_N  17 eelaphaaewdeegefprelwkklaelGllgitvpeeygGagldyleaaivaeelaradaglalllgvhsslvapailrfGteeqkrryLpklasg 112
                    +++a+ aae ++++  p+e ++ l+e+G+  + +p e gG g++  +   ++ ela+ad+ l  +l +h + v    l+    + ++r+ +++++g
     CTQ29603.1  22 TRIAQGAAEREQQRILPDEPIRWLKEAGFGTLRIPREKGGWGASLPQLSALLIELAQADSNLPQALRAHFAFVED-QLNQPDSAGRDRWFRRFLDG 116
                    4588999**9999999********************************************998899999888764.45666777777777777777 PP

                    S CS
  Acyl-CoA_dh_N 113 e 113
                    e
     CTQ29603.1 117 E 117
                    5 PP

>> ArgoMid  Mid domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.9e-05      0.35       1      24 [.     139     162 ..     139     184 .. 0.85
   2 ?   -3.3   0.0       2.6   1.2e+04      33      49 ..     211     227 ..     208     230 .. 0.78
   3 ?   -2.1   0.0       1.1   4.8e+03      11      28 ..     273     290 ..     272     310 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.9e-05
     ArgoMid   1 tprnGsWdmrgkqFlepkakikkW 24 
                 tp +G W+++g +F+++ a    W
  CTQ29603.1 139 TPAEGGWRLDGEKFYSTGALYADW 162
                 699************998777777 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.6
     ArgoMid  33 rkvkenkledfikqlvk 49 
                 ++v+++++ df++ ++ 
  CTQ29603.1 211 ARVETEHVYDFAQRFRY 227
                 67889999999998875 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.1
     ArgoMid  11 gkqFlepkakikkWAilc 28 
                 ++q l+   +i +WA ++
  CTQ29603.1 273 DAQVLQVVGQISSWAWAT 290
                 567788888999999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3099.68
//
Query:       CTQ29604.1  [L=473]
Description: Transporter, major facilitator family protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-34  119.2  21.5    2.8e-34  118.8  21.5    1.1  1  Sugar_tr  Sugar (and other) transporter
    1.7e-24   86.4  74.4    4.8e-23   81.7  38.5    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.3    7.2   6.3        2.7    6.2   0.6    2.5  2  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.8  21.5   4.7e-38   2.8e-34      44     434 ..      71     457 ..      12     468 .. 0.80

  Alignments for each domain:
  == domain 1  score: 118.8 bits;  conditional E-value: 4.7e-38
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS....-SCCHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiA....pkklRga 138
                 s +l+gl++s+ +vG i+G +++g+l+d++GR +++++  ++fvi+a+  ++a+   +v+vli +R+l+GigvG+   ++  y++E++    + +++ +
  CTQ29604.1  71 SPLLTGLVTSSIMVGTIVGNIIGGWLTDKYGRYSVFMADMFFFVISAIAAGLAP---NVWVLIGARFLMGIGVGIDLPVAMSYLAEFSrfagKGNKAAR 166
                 67789*************************************************...*******************************99995555555 PP

                 HHHHHHHHH...HHHHHHHHHHHHHH.HTSS-..TTHHHHHHHCCHHHHHHHHHHG.GGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHH CS
    Sugar_tr 139 lvslyqlai...tfGilvaaifglgl.nktsn..adgwrillglqlvpallllill.lflPESPrylvekgkeeeakevlaklrgeedadrelaeekds 230
                 l  +  +++   t+ +l+ +++++ l +   +  ++ wr  l + +vpall+++++  f+ ESP +   +g+   a ++l+++ g    +  +a+ + +
  CTQ29604.1 167 LAAWCPMWYaasTVCFLIIFGLYFLLpQ---EhlDWLWRASLLFGAVPALLIIAVRsRFMNESPLWAANQGDLTSAVRILRDSWGIHAHEVPAAKPAPA 262
                 5555555541005566666666666633...3447**************999999878************************55554444444443333 PP

                 HHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHH.H...HHHHHS-SHHHHHHHHH CS
    Sugar_tr 231 leaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfva.i...flvdrfGRRtllllGaa 325
                         k+s + l+++  +r r+++  v++i+  + + + i ++ p+i+ +      +++      +n+++ f + +    l  +   R + + G+a
  CTQ29604.1 263 P-------KVSFRVLFEK-PYRERTIVSGVMNICISFEYTA-IAFFLPSILAQFLGAGVFETISASLGLNALFAFTGgLlgmHLAWKYPSRHVAIAGFA 352
                 3.......4558888888.78*****************955.55555666665555555566666667777777665332337888999999******* PP

                 HHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHH CS
    Sugar_tr 326 gmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfag 424
                  +++++++l+   l+++   +a  ++ai+++ l++++ ++g+g  + ++ +  +p+++R+++  ++ a++ + + l  ++ p ++ ++g + +f+v   
  CTQ29604.1 353 LQFVALIVLA---LVGQPHATAGIVLAIAMLGLWLFAEGFGPGAQLMIYPALSYPTAIRATGVGFSRALSGIGSALALFILPLLQASLG-TQMFWVVSL 447
                 *********7...4444444567778899999999999999999999******************************************.999999999 PP

                 HHHHHHHHHH CS
    Sugar_tr 425 lavlfiifvf 434
                  a++ i+f +
  CTQ29604.1 448 AAIIPIFFLL 457
                 9998888865 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7  38.5     8e-27   4.8e-23       4     315 ..      46     386 ..      43     397 .. 0.81
   2 !   18.8  27.9   1.1e-07   0.00063       6     180 ..     287     466 ..     285     473 .] 0.77

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 8e-27
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlgaga 101
                 ++fl a++ ++l+  +   + +++++sp   gl+++  ++g++v+++++G+l+d++Gr +v+++ +++f+++ ++++ +a+++w+l+ +r+l+G+g g+
  CTQ29604.1  46 GVFLDAYDLTTLSYGID-DVVREFQLSPLLTGLVTSSIMVGTIVGNIIGGWLTDKYGRYSVFMADMFFFVIS-AIAAgLAPNVWVLIGARFLMGIGVGI 142
                 77888899999998898.9*****************************************************.5555588******************* PP

       MFS_1 102 lfpagaaliadwfpke....ergraigllsagfslGailg.pllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkeee 188
                  +p++++++a+ +       + +r  ++  + +++++++   ++g +++  l        Wra+ ++ a+ +ll + +     + ++++ +  ++ ++ 
  CTQ29604.1 143 DLPVAMSYLAEFSRFAgkgnKAARLAAWCPMWYAASTVCFlIIFGLYFL--LPqehldwlWRASLLFGAVPALLIIAV--RSRFMNESPLWAANQGDLT 237
                 **********988665334244444444455555555555233343444..3357899****************9665..8888888888888888888 PP

       MFS_1 189 ...................kgtgpaplvpawkallkdpvlwillialllf...ffgfsglltllplylqevlgls..glllaglllallalvgailall 263
                                    ++++pap v+ ++ l+ +p+    +++ +++   +f ++++ ++lp++l + lg +     ++++ l+l al+++ ++ll
  CTQ29604.1 238 savrilrdswgihahevpaAKPAPAPKVS-FRVLFEKPYRERTIVSGVMNiciSFEYTAIAFFLPSILAQFLGAGvfE--TISASLGLNALFAFTGGLL 333
                 88***************************.********662233333333111336666****************552..4444499999999999999 PP

       MFS_1 264 agrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGf.glg 315
                 +  l+ ++++r   + +++l ++a++ lal++ ++ ++ ++l+++++G+  ++
  CTQ29604.1 334 GMHLAWKYPSRHVAIAGFALQFVALIVLALVGQPHATAGIVLAIAMLGLwLFA 386
                 999**99***************************8888888888888885554 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.1e-07
       MFS_1   6 flsalarsilgpalplalaedlgispse.igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa....sslwlllvlrvlqG..l 97 
                 +++++ +++++++lp++la+ lg+ + e i+  l+l al+a+ + l++++l+ ++ +r v ++g++l +++l++l+++    ++   ++++ ++ G  l
  CTQ29604.1 287 ICISFEYTAIAFFLPSILAQFLGAGVFEtISASLGLNALFAFTGGLLGMHLAWKYPSRHVAIAGFALQFVALIVLALVgqphATA-GIVLAIAMLGlwL 384
                 7899999****************9998867778899*******************9999************55555544644222.2333333333113 PP

       MFS_1  98 gagalfpagaali..adwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperk 180
                 +a ++ p+++ +i  a  +p   r+ ++g+  a +++G++l+  + +ll +slg + +f+++ +++++   +f+ll ++ +p+r+
  CTQ29604.1 385 FAEGFGPGAQLMIypALSYPTAIRATGVGFSRALSGIGSALALFILPLLQASLGTQ-MFWVVSLAAIIP--IFFLLAVRHEPTRE 466
                 445666666555433889999********************************965.788888777777..33466666666655 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.6   0.00045       2.7     154     195 ..      57     100 ..      26     110 .. 0.72
   2 ?    2.9   0.4    0.0045        27     132     185 ..     126     182 ..     118     192 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00045
                 xxx.xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 154 isY.idDnvkk.knsplylgilyalrilGpalGfllGslllkly 195
                 +sY idD v++ + spl+ g++++  ++G ++G ++G+ l+  y
  CTQ29604.1  57 LSYgIDDVVREfQLSPLLTGLVTSSIMVGTIVGNIIGGWLTDKY 100
                 45558888887345789999999999999999999999888776 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.0045
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 132 vllfflaqlllGiGatpiytlGisYidDnvk...kknsplylgilyalrilGpalGf 185
                 v +++ a +l+GiG     ++++sY+ ++++   k n +  l++++ ++     + f
  CTQ29604.1 126 VWVLIGARFLMGIGVGIDLPVAMSYLAEFSRfagKGNKAARLAAWCPMWYAASTVCF 182
                 448999********************9986533366677777666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3580.92
//
Query:       CTQ29605.1  [L=292]
Description: ABC transporter, periplasmic substrate-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-36  125.8   0.0    1.8e-36  125.4   0.0    1.0  1  Lipoprotein_9  NLPA lipoprotein
  ------ inclusion threshold ------
       0.12   12.0   0.1       0.21   11.3   0.1    1.3  1  DUF4010        Domain of unknown function (DUF4010)


Domain annotation for each model (and alignments):
>> Lipoprotein_9  NLPA lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0     2e-40   1.8e-36      10     227 ..      59     277 ..      55     286 .. 0.90

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 2e-40
                    HHHHHHHHHHHHHTTT.EEEEEEEESSSSHHHHHHHTTSSSEEEEEEHHHHHHHHHHTT-.EEEEEEEEE---EEE-SS-SSGGG--TT-EEEEES CS
  Lipoprotein_9  10 eaevlekvkkllkkkg.ldleiveFtdyvqpNkaladgeiDanaFQhlpyLeqfnkekgkklvavgnthvepiglYSkkykslselkeGatiavpn 104
                    e++++e +++ ++ ++ l+le v   d vq + a+a+g+    ++Qh+ +L+q   ++g  l++ + ++ + +g+YS++y+s++ l++Gati+vp+
     CTQ29605.1  59 EQRIIEYINQHIAPDYgLKLEAVGVQDPVQADRAVAEGQYAGTIYQHQWWLKQVVDANGFALSTTVPVFQWAFGIYSDRYSSVQALPNGATIVVPD 154
                    67788877777776666******************************************************************************* PP

                    SHHHHHHHHHHHHHTTSSEE-TT.-CTT--GGGEEE-TT--EEEEE-GGGHHHHGGTSSEEEE-HHHHHHTT--HHHH-SEE-SSTSSG-EEEEEE CS
  Lipoprotein_9 105 dpsnegRaLllLekagLikLkdg.kgllatvkdIteNpknLkikeleaaqlpralddvdaavintnyalkagldpkkdalfeedkdspyvniivvr 199
                    d +n+g aL lL++ gLi L+   +  +a +k+I+ Np+++++kel+   +pral++vdaa+ + +   +ag+ p+++++  + + +  +  +v+ 
     CTQ29605.1 155 DGANQGQALWLLQRIGLISLDPAvEPRTAKLKNIVGNPHQFVFKELDLLTMPRALNSVDAAIGYVSQ-FDAGKVPREKGILFPPAPRTFASQLVIG 249
                    *********************99999************************************94444.5577777777777776779999999999 PP

                    TTCTTSHHHHHHHHHHTSHHHHHHHHHH CS
  Lipoprotein_9 200 ekdkddeavkklveayqseevkkaiekk 227
                    +    +e++ kl +a+  ++++++++ +
     CTQ29605.1 250 TPYLSQENIVKLKQAFSDPRIQTWLKTT 277
                    99999************99999988765 PP

>> DUF4010  Domain of unknown function (DUF4010)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.3e-05      0.21      88     121 ..      14      46 ..       4      56 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.3e-05
     DUF4010  88 lpllalallallvaalllrrrekeeeeeelelen 121
                 +p+la++++++l+a++++++r ++++++ +  ++
  CTQ29605.1  14 WPWLAALAVIILLAIAFWWWRGHTQSQQ-VVFGS 46 
                 7989999999999988888888888777.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2203.59
//
Query:       CTQ29606.1  [L=232]
Description: putative D-methionine transport system permease protein MetI [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-15   55.3  15.3    6.9e-15   55.3  15.3    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        1.5    8.7  14.8       0.82    9.6   0.6    3.4  4  DUF3487       Protein of unknown function (DUF3487)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.9     0.073   6.5e+02      51      67 ..      27      43 ..       5      52 .. 0.56
   2 !   55.3  15.3   7.7e-19   6.9e-15      10     184 ..      56     225 ..      41     226 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.073
  BPD_transp_1 51 hlilpviillllsaapy 67
                  +l+ ++++l++++++++
    CTQ29606.1 27 WLMVAIVMLFVVTLGGL 43
                  33333344444444433 PP

  == domain 2  score: 55.3 bits;  conditional E-value: 7.7e-19
  BPD_transp_1  10 lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPna 106
                   l+++  l +ll +++++++slP++vl+  ++ + ++l++ + +i ++++ ++   +p++ +++++alr+lp +   +  ++G srwqi+    l  a
    CTQ29606.1  56 LFPHALLYRLLNWVVNMGRSLPFLVLMAAIIPFTYWLTGTTIGIPAAVVPMIAAGVPFFGRLVENALRELPAEVTAVGVVCGGSRWQIIASAQLSEA 152
                   6788999*******************99999888*************************************************************** PP

  BPD_transp_1 107 lppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprvr 184
                   +p++++ + l++++++  ++++ ++g++ G+g+l +    ++  +     +++a+++a+++ + ++ +l + l  r+r
    CTQ29606.1 153 MPSLVAAVTLNLVSMIEYSAIAGTIGAG-GIGYLAVVYGYQRFDNH----IMIATIVALIATIQLIQFLGDRLVNRLR 225
                   **************************76.6**99888777777774....4566666666667777777777666665 PP

>> DUF3487  Protein of unknown function (DUF3487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.6   9.2e-05      0.82      37      93 ..      14      71 ..       5      79 .. 0.88
   2 ?    6.2   0.5     0.001       9.2      36      81 ..      81     127 ..      72     132 .. 0.79
   3 ?   -0.2   0.1     0.099   8.9e+02      35      53 ..     158     174 ..     128     196 .. 0.51
   4 ?    1.6   0.6     0.028   2.5e+02      38      74 ..     185     223 ..     165     228 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 9.2e-05
     DUF3487 37 lvlglllallvgslaliptialllvllvvlvggkllarlKRgk.Pdtylyrrlelkla 93
                 + +lll +  ++++++  ++l++v l+ lvg  l++   Rg  P+  lyr l++ ++
  CTQ29606.1 14 EIPSLLLPAYGETWLMVAIVMLFVVTLGGLVGVVLFNASPRGLfPHALLYRLLNWVVN 71
                5678888888899*****************************66**********9876 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.001
     DUF3487  36 glvlglll.allvgslaliptialllvllvvlvggkllarlKRgkPd 81 
                  +++ +++  +l+g+ + ip++++ +++++v + g+l+++  R+ P 
  CTQ29606.1  81 LMAAIIPFtYWLTGTTIGIPAAVVPMIAAGVPFFGRLVENALRELPA 127
                 444445541578999999*******************9999998875 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.099
     DUF3487  35 vglvlglllallvgslali 53 
                 + + l   l+ ++++ a+ 
  CTQ29606.1 158 AAVTLN--LVSMIEYSAIA 174
                 222222..22222222333 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.028
     DUF3487  38 vlglllallvgslaliptia.lllvllvvlv.ggkllar 74 
                 ++ +     +++ ++i ti+ l++ + ++ + g +l++r
  CTQ29606.1 185 LAVVYGYQRFDNHIMIATIVaLIATIQLIQFlGDRLVNR 223
                 333444556888888888874555555554404444455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1714.11
//
Query:       CTQ29607.1  [L=340]
Description: Methionine import ATP-binding protein MetN 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-33  115.3   0.0    4.3e-33  114.7   0.0    1.2  1  ABC_tran     ABC transporter
    1.6e-08   34.3   0.1    0.00014   21.4   0.0    2.2  2  SMC_N        RecF/RecN/SMC N terminal domain
    6.2e-08   32.8   0.1     0.0017   18.2   0.0    2.3  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    9.6e-08   32.4   0.1      0.003   17.9   0.0    2.3  2  AAA_22       AAA domain
    0.00029   21.3   3.7    0.00069   20.0   3.4    1.8  1  AAA_16       AAA ATPase domain
    0.00061   19.4   0.1       0.11   12.1   0.1    2.3  2  AAA_25       AAA domain
     0.0013   18.4   0.0     0.0025   17.5   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain
     0.0017   17.8   0.0      0.098   12.1   0.0    2.3  2  TniB         Bacterial TniB protein
     0.0023   18.5   0.0     0.0037   17.8   0.0    1.2  1  AAA_23       AAA domain
     0.0031   17.3   0.1      0.016   15.1   0.1    2.2  1  NIL          NIL domain
     0.0031   17.9   0.0      0.057   13.8   0.0    2.3  1  AAA          ATPase family associated with various cellular a
     0.0038   17.0   0.1       0.46   10.2   0.0    2.9  3  IstB_IS21    IstB-like ATP binding protein
     0.0099   15.8   0.1      0.017   15.0   0.1    1.3  1  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.028   14.6   0.0      0.055   13.6   0.0    1.6  1  AAA_33       AAA domain
       0.04   13.3   0.1        2.1    7.6   0.0    2.1  2  ATPase       KaiC
      0.055   12.7   0.0        3.6    6.8   0.0    2.1  2  Rad51        Rad51
       0.11   11.6   0.0       0.16   11.1   0.0    1.2  1  NB-ARC       NB-ARC domain
       0.12   12.1   0.1       0.23   11.2   0.1    1.4  1  Pilus_CpaD   Pilus biogenesis CpaD protein (pilus_cpaD)
       0.15   12.4   0.1       0.89    9.8   0.1    2.2  1  SbcCD_C      Putative exonuclease SbcCD, C subunit
       0.25   11.2   2.3        6.7    6.6   0.7    2.7  3  ETF          Electron transfer flavoprotein domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   0.0   4.8e-36   4.3e-33       1     137 []      22     170 ..      22     170 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.7 bits;  conditional E-value: 4.8e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren.............esde 83 
                 lk +sl++ e +++a+vG++GaGKStL+++++ l++p++G+i+++gkdl+    + l++ r+ ig+++q + l ++ t+ en             + ++
  CTQ29607.1  22 LKGLSLQVPERSITAVVGPSGAGKSTLARCISLLEQPDSGSIRINGKDLSAlsgEALRRERRAIGTVFQSSALLSRRTAWENvalplawlgvverDIKA 120
                 7899***********************************************999***************************************999999 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++ ++l+++gl++++d       ++LSgGq+qr+ +aral+ +p++ll+DE+t+
  CTQ29607.1 121 RVGELLESVGLSHKADAWP----AQLSGGQRQRIGIARALALRPSVLLADEATS 170
                 9************665555....*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00028      0.26      23      45 ..      31      53 ..      24      92 .. 0.88
   2 !   21.4   0.0   1.5e-07   0.00014     121     205 ..     120     206 ..     111     220 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00028
                TSSEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 23 sksftaivGpNGSGKsnlldAil 45
                ++s+ta+vGp G+GKs l   i+
  CTQ29607.1 31 ERSITAVVGPSGAGKSTLARCIS 53
                6789*************998884 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 1.5e-07
                 HHHHHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 121 kevsellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                 + v elles+g+s +      +LSgG+++ + +a  +A++   p+ + l De  + LD + ++ v  llk+ +++ Q+ ++ +++em +  
  CTQ29607.1 120 ARVGELLESVGLSHKadawpaQLSGGQRQRIGIARALALR---PS-VLLADEATSGLDPQATASVLALLKRLRDEYQLAIVLITHEMDAVR 206
                 678889999999988888888*************999974...54.6688***************************98877777664433 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.9e-06    0.0017       1      27 [.      34      60 ..      34      86 .. 0.75
   2 !   12.3   0.0   0.00012      0.11     235     297 ..     140     200 ..     131     204 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.9e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldr 27
                +++++Gp g+GKS+L ++++ll + d+
  CTQ29607.1 34 ITAVVGPSGAGKSTLARCISLLEQPDS 60
                79********************54322 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00012
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTH 297
                 ++lS G+++ ++++ al+ ++   s+ll DE  +gL+P++++++l llk+l++     ++l TH
  CTQ29607.1 140 AQLSGGQRQRIGIARALALRP---SVLLADEATSGLDPQATASVLALLKRLRDeYQLAIVLITH 200
                 689999999999999999988...*********************9999988877788899999 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.3e-06     0.003       5      30 ..      32      57 ..      30     105 .. 0.80
   2 !   12.3   0.0   0.00017      0.15      59     130 ..     124     200 ..     114     206 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.3e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleqld 30
                ++i++v+G+sG+GK+tl+r +    +
  CTQ29607.1 32 RSITAVVGPSGAGKSTLARCISLLEQ 57
                789***************98776654 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00017
      AAA_22  59 ellralglelka..erlsseell.ealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvGt 130
                 ell+ +gl++ka        +l   + ++   ara    +++l+ DEa   l+   ++ +l  L++l +  +++++++L+ +
  CTQ29607.1 124 ELLESVGLSHKAdaW---PAQLSgGQRQRIGIARALalrPSVLLADEATSgLDpqaTASVLALLKRLRD--EYQLAIVLITH 200
                 566666666666331...22222222222222222244678***********98655************..********965 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   3.4   7.7e-07   0.00069      21     127 ..      27     188 ..      12     214 .. 0.59

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 7.7e-07
      AAA_16  21 sgrp..elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala.......... 106
                  + p  +++ ++G+sG GKs+l+r++   le+ +   +r + ++l      sa   +al r +  r++++  +s++l   r++ e ++           
  CTQ29607.1  27 LQVPerSITAVVGPSGAGKSTLARCIS-LLEQPDSGSIRINGKDL------SAlSGEAL-R-RERRAIGTVFQSSALLSRRTAWENVALplawlgvver 116
                 444455899******************.89999888888888888......66556666.5.5667777775555555555555555555666766667 PP

      AAA_16 107 ...................................................avpelagaeasrllellkrll 127
                                                                    a++ l++++  ++l+llkrl 
  CTQ29607.1 117 dikarvgellesvglshkadawpaqlsggqrqrigiaralalrpsvlladeATSGLDPQATASVLALLKRLR 188
                 666666666665555554444333333333344444444444444444444333333333344444433333 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   0.00012      0.11      30      52 ..      29      51 ..       9      55 .. 0.85
   2 ?    5.0   0.0     0.017        15     164     188 ..     176     200 ..     165     203 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
      AAA_25 30 lpagelallaGapgtGKttlald 52
                +p+ ++++++G++g+GK+tla  
  CTQ29607.1 29 VPERSITAVVGPSGAGKSTLARC 51
                6999****************965 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.017
      AAA_25 164 dvgalvealeriarrtgaavllvhH 188
                 +++++++ l+r++++++ a++l+ H
  CTQ29607.1 176 ATASVLALLKRLRDEYQLAIVLITH 200
                 4589999*****************9 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.8e-06    0.0025      17      50 ..      27      60 ..      21      68 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.8e-06
      AAA_29 17 ieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                +++ ++++t ++GpsG+GKSTl   i+ l  p++
  CTQ29607.1 27 LQVPERSITAVVGPSGAGKSTLARCISLLEQPDS 60
                66666779*************9777666655555 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.046        41      36      53 ..      33      50 ..       6      63 .. 0.71
   2 !   12.1   0.0   0.00011     0.098     117     161 ..     157     199 ..     115     237 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.046
        TniB 36 pnlllvGdsnnGKtmive 53
                +   +vG+s  GK+++++
  CTQ29607.1 33 SITAVVGPSGAGKSTLAR 50
                55789**********987 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00011
        TniB 117 elkvrvLiiDEihnllagsarkqreflnalksLgnelkipivlvG 161
                 +l++ vL+ DE  + l    ++   +l++lk+L +e++++ivl+ 
  CTQ29607.1 157 ALRPSVLLADEATSGL--DPQATASVLALLKRLRDEYQLAIVLIT 199
                 45677***********..6777889*****************984 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.1e-06    0.0037      18      41 ..      31      54 ..      22      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.1e-06
      AAA_23 18 skgltlItGpNGaGKTTildAikl 41
                ++ +t+++Gp GaGK+T+ ++i l
  CTQ29607.1 31 ERSITAVVGPSGAGKSTLARCISL 54
                6779******************76 PP

>> NIL  NIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.7e-05     0.016      14      51 ..     268     305 ..     254     329 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.7e-05
                 S-HHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEE CS
         NIL  14 ePllshlvrqlglevnIlqGsveriqgtpfGqlviels 51 
                 +  +s+l++q  l++ +l+G ve i+g+  G+l   ++
  CTQ29607.1 268 TDWISRLSQQWALQIDLLGGHVEVINGRLAGRLQAGVR 305
                 5589*****************************98884 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.3e-05     0.057       3     118 ..      37     208 ..      35     216 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.3e-05
                 EESSTTSSHHHHHHHHHHH..HTHEEEEEETTTCSSS.............................................................. CS
         AAA   3 lyGppGtGKTllakavake..lgvefleisgsellsk.............................................................. 37 
                 ++Gp G GK++la+ +      ++  ++i+g++l                                                                 
  CTQ29607.1  37 VVGPSGAGKSTLARCISLLeqPDSGSIRINGKDLSALsgealrrerraigtvfqssallsrrtawenvalplawlgvverdikarvgellesvglshka 135
                 79************8765421446667777777763356677777899999999999999999999999999999999999999999999999999999 PP

                 ..STTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHH CS
         AAA  38 ..yvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpa 118
                   +  + +   r+ +  a++ a +ps+l+ DE+ +    +       ++  v +Ll+ l ++ +    + ++++t+++d +  a
  CTQ29607.1 136 daWPAQLSGGQRQRIGIARALAlRPSVLLADEATSGLDPQ-------ATASVLALLKRLRDEYQ----LAIVLITHEMDAVRTA 208
                 9988888888888888888888889999999999988777.......55555666666665555....6788888888887766 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00051      0.46      30      68 ..      14      53 ..       4      63 .. 0.75
   2 ?    0.8   0.0       0.4   3.6e+02     106     148 ..     157     201 ..     144     206 .. 0.67
   3 ?    1.9   0.0      0.18   1.6e+02      66      89 ..     209     232 ..     204     256 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00051
   IstB_IS21 30 ldkrkvkeLatlsf.iekkenivllGpsGvGKshlaialg 68
                +d r  + L +ls  + ++   +++GpsG+GKs la  ++
  CTQ29607.1 14 ADGRLSAVLKGLSLqVPERSITAVVGPSGAGKSTLARCIS 53
                55566666666664355667789*************8775 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.4
   IstB_IS21 106 llkvdllilDdl..gllpldqaeaellfeviekryerrsiiitsn 148
                  l++++l+ D+   gl p   a+   l++ + + y+ + ++it +
  CTQ29607.1 157 ALRPSVLLADEAtsGLDPQATASVLALLKRLRDEYQLAIVLITHE 201
                 567889988885235555555555566666777888888888865 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.18
   IstB_IS21  66 algveavraglsvlfvrvedLvee 89 
                 a +v+ +r+g+ v + r+edL+++
  CTQ29607.1 209 ADAVAEIRDGTIVQYGRIEDLLAR 232
                 557889***************975 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.9e-05     0.017      99     120 ..      32      53 ..      13      68 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-05
                  TSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinall 120
                   +++++vG+SG+GKStL   + 
   CTQ29607.1  32 RSITAVVGPSGAGKSTLARCIS 53 
                  4899*************98775 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.2e-05     0.055       3      19 ..      36      52 ..      34     121 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.2e-05
      AAA_33  3 llvGlpGsGKstlaerl 19
                 +vG++G+GKstla+ +
  CTQ29607.1 36 AVVGPSGAGKSTLARCI 52
                589***********963 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0024       2.1      16      36 ..      29      49 ..      19      52 .. 0.92
   2 ?    3.4   0.0     0.046        41     142     186 ..     178     221 ..     167     231 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0024
      ATPase 16 ipegrvvlitGepGtGKtifa 36
                +pe++++ ++G +G+GK+++a
  CTQ29607.1 29 VPERSITAVVGPSGAGKSTLA 49
                699***************998 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.046
      ATPase 142 eilrqlvrvlkklgvTailvsekssseeaaggygveefivdgviv 186
                 + +  l+++l++ ++ ai     ++++ ++   +v+e i dg+iv
  CTQ29607.1 178 ASVLALLKRLRDEYQLAIVLITHEMDAVRTAADAVAE-IRDGTIV 221
                 678899999*998888888777789999*********.*****97 PP

>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.004       3.6      23      62 ..      15      57 ..       9      83 .. 0.79
   2 ?    3.8   0.0     0.031        28     163     194 ..     178     209 ..     173     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.004
                -HHHHHHHTS...SEESSSEEEEEESTTSSHHHHHHHHHHHTT CS
       Rad51 23 skklDelLgG...GietgsiteifGefrsGktqlchtlcvtvq 62
                + +l ++L+G    ++  sit ++G +++Gk+ l+  +++  q
  CTQ29607.1 15 DGRLSAVLKGlslQVPERSITAVVGPSGAGKSTLARCISLLEQ 57
                556666676643357889*****************99999877 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.031
                 HHHHHHHHHHHHHH--EEEEEEE-------.- CS
       Rad51 163 gkllrtLrkladefevavvitnqvvaqvdgqa 194
                 + +l  L++l de+++a+v+  + ++ v ++a
  CTQ29607.1 178 ASVLALLKRLRDEYQLAIVLITHEMDAVRTAA 209
                 668899***********999888887776654 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00018      0.16       6      40 ..      19      52 ..      14      57 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00018
                HHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHH CS
      NB-ARC  6 ekviekLlekdelqslvvalvGmgGvGKttlakqi 40
                 +v + L+  + +++ + a+vG  G GK+tla+ i
  CTQ29607.1 19 SAVLKGLS-LQVPERSITAVVGPSGAGKSTLARCI 52
                56777777.6778888****************876 PP

>> Pilus_CpaD  Pilus biogenesis CpaD protein (pilus_cpaD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00026      0.23      44      99 ..     163     217 ..     132     225 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
  Pilus_CpaD  44 lkvasgdggLtaaqrarlealaeeyrregagaivisvpsgssneaaaaaaaaeira 99 
                 l +++ ++gL++++ a + al++++r e++ aiv+ +++   + ++aa+a+aeir+
  CTQ29607.1 163 LLADEATSGLDPQATASVLALLKRLRDEYQLAIVLITHEMD-AVRTAADAVAEIRD 217
                 55668899***************************997555.55699999999997 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1     0.001      0.89      63      89 ..     159     185 ..     130     186 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.001
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                 ++++++ DEA s+lD++ +a++l+ll+
  CTQ29607.1 159 RPSVLLADEATSGLDPQATASVLALLK 185
                 4677888*****************997 PP

>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.7   2.4e+03      18      53 ..      18      52 ..       8      54 .. 0.68
   2 ?    6.6   0.7    0.0074       6.7      61     115 ..     161     219 ..     142     223 .. 0.76
   3 ?    2.9   0.0       0.1        92      94     122 ..     244     272 ..     241     291 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.7
                HHHHHHHHHHHHHHT.--EEEEEEES....S-.CHHHH CS
         ETF 18 lealeaArrlkekag.gevtavvvGppeaeea.lreal 53
                l+a+ +++ l+      ++tavv Gp+ a ++ l++++
  CTQ29607.1 18 LSAVLKGLSLQV--PeRSITAVV-GPSGAGKStLARCI 52
                678888888855..325677766.88777666677665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0074
                 EEEEE-GGGSS--CCHHHHHHHHHHHHC...--SEEEEESSCCH.HHHHHHHHHHCT-E CS
         ETF  61 vilvddpalagydaeatakalaalikke...dpdlvlagataig.kqvaprlAalLgvp 115
                  +l+ d+a  g d++ata++la l +     +  +vl+ ++    +  a  +A+  +  
  CTQ29607.1 161 SVLLADEATSGLDPQATASVLALLKRLRdeyQLAIVLITHEMDAvRTAADAVAEIRDGT 219
                 5789999999*********9987655555468999999999995599999999987755 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.1
                 EEESSCCHHHHHHHHHHHCT-EEEEEESE CS
         ETF  94 lagataigkqvaprlAalLgvplitdvte 122
                 l++a a+  +++ rl+ + +vp++td ++
  CTQ29607.1 244 LTPAAATHSDLLLRLSYRWDVPVATDWIS 272
                 78999999*****************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2326.25
//
Query:       CTQ29608.1  [L=468]
Description: putative coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-53  182.0   0.3    2.4e-53  181.6   0.3    1.1  1  Bac_luciferase  Luciferase-like monooxygenase
  ------ inclusion threshold ------
       0.02   14.7   0.1      0.066   13.0   0.0    1.8  2  Amidohydro_2    Amidohydrolase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.6   0.3   2.6e-57   2.4e-53      18     310 ..      35     391 ..      21     395 .. 0.88

  Alignments for each domain:
  == domain 1  score: 181.6 bits;  conditional E-value: 2.6e-57
  Bac_luciferase  18 asaslrylvelaraaEelGfdavwvaehhggpgga................ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhl 96 
                     +  +l+y v+lar++E+ +fd++++a+ +g+ +                   d+++l++ +a +Te++++g +++  +  hP+  A+   tLdhl
      CTQ29608.1  35 Y-KDLEYWVDLARLLERGKFDGLFIADVLGIYDVLngsgdaairqatqvpvNDPLALITPMALVTEHLGFGLTASLSF-EHPYPFARRLSTLDHL 127
                     3.489*************************977779******************************************.**************** PP

  Bac_luciferase  97 sgGRfglglgtggpaveerrfGv....dhderyarlrEfvevlrrlwrg......................eevdfeGeffsvkgalllprpgqg 165
                     ++GR+g++++t+  ++ +r+ G+    dhd+ry++++E+++v+ +l++g                      ++++++G+ffsv g++l  +++q+
      CTQ29608.1 128 TKGRVGWNIVTSYLESGARNIGQqtqtDHDTRYDYADEYLQVIYKLLEGswedgavlrdrerkifsdprkiHPINHQGQFFSVPGIHLCEPSPQR 222
                     ***********************************************88999******************9999***********9999999888 PP

  Bac_luciferase 166 piP.vyvaaaspaglelaarhadglllageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraearaliagld.......... 249
                       P +y a+as +g ++aa ha+ +++a  +   ++++++++r +aaeagrdp++i +    tviv+dt+ eA+a+++++ + +           
      CTQ29608.1 223 -TPvLYQAGASSRGKQFAAGHAECVFVAAPSKVLLKKTVADIRRRAAEAGRDPHSILIFNLQTVIVGDTDREAQAKWQEYKQYVSyegalallsg 316
                     .9999************************************************************************555544446799999999 PP

  Bac_luciferase 250 .......fyaldsegagreaeaa....eiqeeedanlwagaadavpdelvaatal..vGtpeqvaerlaa.yaea 310
                            +y+ d+++   +++a     e + + d+n++ +++++ + +++ +++   vG++++va++l+  ++e+
      CTQ29608.1 317 wtgidfgQYQPDQVLKYLHTNAIqsavEAFSTADPNRQWTVQALADWAGIGGFGPlvVGSAQTVADELQSwVEET 391
                     99*****66666666555555554444667777777777777777666666666578************955555 PP

>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.39   3.5e+03     160     193 ..      72     111 ..      38     128 .. 0.67
   2 ?   13.0   0.0   7.3e-06     0.066      43     116 ..     326     398 ..     317     410 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.39
                   HHHHHHHHHHHHHCCHHHHCTTSEEEESGGGTT......T CS
  Amidohydro_2 160 pqettraiqplllsgvarkfPnlkivlaHgGgp......s 193
                    ++ +r+   + +++ +++ +   +v  H+G++      +
    CTQ29608.1  72 GDAAIRQATQVPVNDPLALITPMALVTEHLGFGltaslsF 111
                   4455555555555555555555788999999885555552 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 7.3e-06
                   EHCHHHHHHHHTSHHCHHHHHHHHHHHHHHHHHHHHHHCTTCBECEEECTSSHCHHHHHHHHHHHHTTECEEEE CS
  Amidohydro_2  43 speallvlnaaagiaravivaalcrgannrvlaeaakrpdrfvggaavvpldpedaaaeleraveelgfkGvrl 116
                   +p+ +l++ ++++i+ av    ++   n +++ +a++  ++++g++ +v+++++++a+el  +vee  + G++l
    CTQ29608.1 326 QPDQVLKYLHTNAIQSAVEAFSTA-DPNRQWTVQALADWAGIGGFGPLVVGSAQTVADELQSWVEETDVDGFNL 398
                   566666666666666665544444.88********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3360.48
//
Query:       CTQ29609.1  [L=465]
Description: FAD-dependent oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-33  114.8   1.3    1.8e-30  106.0   0.1    2.3  2  NAD_binding_9   FAD-NAD(P)-binding
    7.2e-09   35.7   3.3    4.5e-08   33.1   3.2    2.0  1  DAO             FAD dependent oxidoreductase
    8.8e-08   32.3   0.1    3.8e-07   30.2   0.1    2.2  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    6.1e-07   29.0   0.0    1.2e-05   24.7   0.0    2.4  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    6.3e-06   25.6   0.1       0.16   11.1   0.0    2.8  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    2.4e-05   24.8   0.7      0.001   19.6   0.1    2.4  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0026   16.7   0.1     0.0026   16.7   0.1    1.4  2  Trp_halogenase  Tryptophan halogenase
  ------ inclusion threshold ------
       0.02   13.6   0.0       0.11   11.2   0.0    2.0  2  HI0933_like     HI0933-like protein
       0.03   13.6   0.1      0.054   12.7   0.1    1.4  1  Thi4            Thi4 family
       0.12   11.5   0.1       0.96    8.5   0.1    2.0  2  GIDA            Glucose inhibited division protein A
       0.14   11.2   4.9       0.23   10.5   0.1    2.2  2  FAD_binding_2   FAD binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.1   1.1e-33   1.8e-30       1     155 [.       8     157 ..       8     158 .. 0.90
   2 !    7.8   0.1    0.0018         3     103     154 ..     314     369 ..     279     371 .. 0.87

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 1.1e-33
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvwrtdqseelllNvpasemslftddpptfaeWlrerga...lee.aeeldpddfv 91 
                    +i+G+G++G+av+ +Ll+ a  ++ +++tl +p ++pgag +++t+ ++++++Nvpa++m+l  d++  f++W+r ++a   +   a + d++ ++
     CTQ29609.1   8 VIIGGGFSGAAVAIELLRLA--PNGVRVTLLEPrQSPGAGVAYSTA-EPTHRINVPAARMQLAGDEEGAFDRWYRHQPAfavD-AqALRPDGSVYP 99 
                    7******************8..***********6677*66666666.89*****************************97643.247888999*** PP

  NAD_binding_9  92 pRalyGrYlrdlfeellarlpegvtvevhraevvdleeradgqavlladgaslaadaVvLAlGh 155
                    +R  +GrY++++f++++a  ++g +++++r+++++ ++     +v++++g +l+ad +vLA+ h
     CTQ29609.1 100 QRGQFGRYVAQRFADAAA--SSGGRLRHLRDRALAFHQG----MVTTDGGLQLKADLLVLAISH 157
                    ***************995..55789**********9965....79999**************99 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0018
  NAD_binding_9 103 lfeellarlpegvtvevhraevvdleeradgqavlladg....aslaadaVvLAlG 154
                    +++e+l++ ++  +++v  a+ ++++ ++++ +++la+     ++l +d+++L++G
     CTQ29609.1 314 QVAEVLEARQRTGSLQVQAARLLSISGEGETLRLTLARRgggvQTLSVDHLILTTG 369
                    6778888889999******************988884332356789*********9 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   3.2   2.7e-11   4.5e-08       1     205 [.       6     373 ..       6     396 .. 0.63

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2.7e-11
                 EEEEECTSHHHHHHHHHHHHT...T..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH.HHHHHHHHHHHHHHHHHHHHSSTTS.EEEEEEEEEESS CS
         DAO   1 dvviiGGGiiGlstAyeLarr...g..VtllekgdiagsgaSgrnsgllhsglrylpeas.elarlslealeelreleeelgidid.yrrtGllslaad 92 
                 ++viiGGG  G+++A eL r    g  Vtlle +  +g g    ++   h  +   p a  +la   + a++++++++   ++d + +r+ G+++  ++
  CTQ29609.1   6 HIVIIGGGFSGAAVAIELLRLapnGvrVTLLEPRQSPGAGVAYSTAEPTHR-IN-VPAARmQLAGDEEGAFDRWYRHQPAFAVDAQaLRPDGSVYPQRG 102
                 79****************7655445*************9999999999999.53.33331144444445589999999999999888999999999887 PP

                 ................................................................................................... CS
         DAO  93 ................................................................................................... 92 
                                                                                                                    
  CTQ29609.1 103 qfgryvaqrfadaaassggrlrhlrdralafhqgmvttdgglqlkadllvlaishpppslpaqaeawrhhpalianpwqpgaldaiapharvavmgtgl 201
                 666666777777777777777777777777777777777777777777777777777777776666666666666666666666666666666666666 PP

                 .................................................HHHHHHHHHHHHHHHHTTTTEE.EEEH..HHHHHHSTTST.....TTSEE CS
         DAO  93 .................................................eeelealdkllallleagldae.llda..eevrelepalp.....gllga 134
                                                                  +  l +++  +a ++++gl  + +lda  ++ ++++ al+     ++l  
  CTQ29609.1 202 tmadtvatldrlghrssivafsrhgllsrgnlsgagatwpgdyqqgslrQ-RLRQIRLDVAYAAQQGLSWQvVLDAvrQQGQRIWQALSvadrqRFLR- 298
                 66666666666666666666666666666666666666666555544431.23333344444455666655346664223334443322333345554. PP

                 EEETTEEEEEHHHHHHHHHHHHHHT...T-EEEESECEEEEEEEETCEEEEE...EECT.EEEE.EEEEEEE--GGGHH CS
         DAO 135 lfypdtgqvdpakltaalaraaeal...Gveilegtevtgleeedgkvwgve...rttp.gend.aadavVnaaGawsd 205
                  + ++ + v+ +++++ +a+ +ea+   G   ++ ++  ++   +g + +++        g ++ ++d++++++G+  +
  CTQ29609.1 299 -HLRHYWDVHRYRVAPQVAEVLEARqrtGSLQVQAARLLSI---SGEGETLRltlARRGgGVQTlSVDHLILTTGPAHR 373
                 .5667777888888888888876662233222333344444...34455665654222224332467888888888766 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1   2.4e-10   3.8e-07       1      54 [.       9      66 ..       9      80 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2.4e-10
                   EE--SHHHHHHHHHHHCC...TEEEEEE-SSSSSS.GGG-EECETTCEECTS---EEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka...gfdvlllekrdrlG.Graasyevpgvrvdygahifhg 54
                   I+G+G+sG++ A +L +    g++v+lle r+++G G a+s   p +r++++a  +  
     CTQ29609.1  9 IIGGGFSGAAVAIELLRLapnGVRVTLLEPRQSPGaGVAYSTAEPTHRINVPAARMQL 66
                   9***********998773356**************999999999******99987754 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   7.5e-09   1.2e-05       2     172 ..       6     221 ..       5     230 .. 0.72
   2 ?    1.3   0.0     0.098   1.6e+02      65     111 ..     326     372 ..     264     393 .. 0.69

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 7.5e-09
                  SEEEE--SHHHHHHHHHHHH...HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH....................................... CS
                  xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq...agakvtlvelegtclnggcllskallgvaedaeias....................................... 57 
                  ++v+iGgG+ G a+a++l +   +g++vtl+ + ++ ++ g+ +s+a    + +   a+                                       
   CTQ29609.1   6 HIVIIGGGFSGAAVAIELLRlapNGVRVTLL-EPRQSPGAGVAYSTAEPTHRINVPAARmqlagdeegafdrwyrhqpafavdaqalrpdgsvypqrg 102
                  79******************9999*******.888888888888776555555555555677788888889999999999999999999988887665 PP

                  ...........HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC..........TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHH CS
                  ...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ...........evvkklnqgielllgeevvkidpgkkkvklekkke..........gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsae 134
                             +   + +  ++ l +                              + + ++++d lvlA+   p  + +p+ ae + ++  +   a+
   CTQ29609.1 103 qfgryvaqrfaDAAASSGGRLRHLRD-R-----------------AlafhqgmvttDGGLQLKADLLVLAISHPP--PSLPAQAEAWRHH--PALIAN 178
                  55554444443222222222222222.2.................1333444444488999*********97555..4567665566555..666788 PP

                  HHCCSS-T.....SEEEEES-SHHHHHHHHHHHHHT-EEEEEE CS
                  xxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 135 alklkllp.....krivvvGgGyiGvElAaalaklgkevtlve 172
                  +++   l+     +r++v G G++  ++ a+l +lg++  +v 
   CTQ29609.1 179 PWQPGALDaiaphARVAVMGTGLTMADTVATLDRLGHRSSIVA 221
                  8888888888999*******99999999999999999887775 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.098
                  HHCCCCHCCTCEEEEESCEEEEETEEEC.TCEEEEEESEEEE---EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  65 qgielllgeevvkidpgkkkvklekkke.gdeekiaydklvlAtGssp 111
                   ++++ ++   ++i  + +++ l+  ++ g  +++  d+l+l tG   
   CTQ29609.1 326 GSLQVQAA-RLLSISGEGETLRLTLARRgGGVQTLSVDHLILTTGPAH 372
                  33444444.555564333455554444347778999999999999433 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   9.8e-05      0.16     191     225 ..       4      39 ..       1      44 [. 0.83
   2 !   10.9   0.0   0.00011      0.18     140     225 ..     139     225 ..      96     236 .. 0.81
   3 ?   -0.6   0.0      0.35   5.7e+02     301     339 ..     333     369 ..     277     372 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.8e-05
  K_oxygenase 191 kkriaVvGsGqSaaeifedllrrqkk.velklvtrs 225
                  + +i+++G+G S+a ++ +llr +++ v ++l+  +
   CTQ29609.1   4 EPHIVIIGGGFSGAAVAIELLRLAPNgVRVTLLEPR 39 
                  679*******************97765888877655 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00011
  K_oxygenase 140 aegeeeelearnlvlgvG.tepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrs 225
                  +++   +l+a  lvl++    p++P+++e+ ++++ ++ +       ++ + + r+aV+G G + a+ +  l r  +++++  ++r 
   CTQ29609.1 139 TTDGGLQLKADLLVLAIShPPPSLPAQAEAWRHHPALIANPWQPGALDAIAPHARVAVMGTGLTMADTVATLDRLGHRSSIVAFSRH 225
                  445578999********96789**********999999999888899999********************99999999999888886 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.35
  K_oxygenase 301 revesaeaegkgeveltlrneesgeeetlevdavvlATG 339
                   ++ s++ eg+ +++ltl     g  +tl+vd ++l TG
   CTQ29609.1 333 ARLLSISGEGE-TLRLTLAR-RGGGVQTLSVDHLILTTG 369
                  44555555664.77777776.566678889999999998 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   6.2e-07     0.001       1      35 [.       6      43 ..       6      51 .. 0.89
   2 ?    3.3   0.0     0.077   1.2e+02       1      31 [.     193     223 ..     193     231 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6.2e-07
                EEEEECSSHHHHHHHHHHHHTT...SEEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg...kkVtvversdkll 35
                ++v++GgG++g  +A +l +l+    +Vt++e +  + 
  CTQ29609.1  6 HIVIIGGGFSGAAVAIELLRLApngVRVTLLEPRQSPG 43
                79****************99987779******998775 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.077
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvvers 31 
                 +v+v+G G++  +  ++l +lg++ ++v  s
  CTQ29609.1 193 RVAVMGTGLTMADTVATLDRLGHRSSIVAFS 223
                 799**********************999876 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.6e-06    0.0026       2      49 ..       7      54 ..       6      60 .. 0.91
   2 ?   -3.9   0.2       2.8   4.5e+03     251     293 ..     261     305 ..     260     316 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.6e-06
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS---SS-EE--THH CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlveseeigtvgvGeatipsi 49
                    ivi+GGG +G  +A+ l +   + ++vtl+e  + +  gv  +t  ++
      CTQ29609.1  7 IVIIGGGFSGAAVAIELLRLAPNGVRVTLLEPRQSPGAGVAYSTAEPT 54
                    9********************999***************998887665 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.8
                     EEE-SSEEEEEEEETTEEEEEEEE-TT..TS-HHHHHHHHHHHCT CS
  Trp_halogenase 251 ataekaGWtWkiPLqhrlgnGyvyssa..hadddeAlaellaeld 293
                     a a ++G  W++ L    ++G    +a   ad+++ l++l++ +d
      CTQ29609.1 261 AYAAQQGLSWQVVLDAVRQQGQRIWQAlsVADRQRFLRHLRHYWD 305
                     567788888888887777777544333113466666666666655 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.8e-05      0.11       2      41 ..       6      48 ..       5      58 .. 0.90
   2 ?   -0.5   0.0      0.24   3.9e+02     111     181 ..     315     387 ..     309     392 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.8e-05
                 SEEEE--SHHHHHHHHHH...HHTT--EEEE-SSSSS-HHHHH CS
  HI0933_like  2 dviviGgGaAGlmaAisa...akrgkrVlllekakklgrKili 41
                 ++++iGgG +G   Ai++   a +g rV+lle  +++g  ++ 
   CTQ29609.1  6 HIVIIGGGFSGAAVAIELlrlAPNGVRVTLLEPRQSPGAGVAY 48
                 69**************9888899************99987665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.24
                  HHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.....TTEEEEESEEEE----SS-GGGT--SHHHHHHH CS
  HI0933_like 111 ivdallkelkeagvklrletevksvekeedgkfrvkt.k...seeeleadklvlAtGGlSiPklGstgkgyklae 181
                  + ++l+++ +    +++   ++ s++  e++++r+++ +   + ++l+ d+l+l+tG +  + + s+++  +la+
   CTQ29609.1 315 VAEVLEARQRTGSLQVQAA-RLLSISG-EGETLRLTLaRrggGVQTLSVDHLILTTGPAHRALTDSQPFLQDLAR 387
                  5566665555555555443.4444533.34446666532333557899999999999999999999999988887 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.3e-05     0.054      16      57 ..       3      46 ..       1      51 [. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.3e-05
                TEEEEEEE--SHHHHHHHHHHHHC..TTS-EEEEESSSS--TTT CS
        Thi4 16 aesDvvivGaGssGLtaayylakk..pdlkvailersvspGGGa 57
                ae  +vi+G+G sG + a  l +    +++v++le + spG G+
  CTQ29609.1  3 AEPHIVIIGGGFSGAAVAIELLRLapNGVRVTLLEPRQSPGAGV 46
                6778**************9887766448*************997 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00059      0.96       2      30 ..       7      38 ..       6      58 .. 0.76
   2 ?    0.7   0.0      0.14   2.2e+02      91     151 ..     305     371 ..     246     397 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00059
                EEEE-SSHHHHHHHHHHHH...TT--EEEEES CS
        GIDA  2 viViGgGhAGceAAlaaar...lGakvlLith 30
                +++iGgG +G + A+++ r    G++v+L+ +
  CTQ29609.1  7 IVIIGGGFSGAAVAIELLRlapNGVRVTLLEP 38
                89************986552227999999854 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.14
                 EE-HHHHHHHHHHHHHT...STTEEEEES-EEEEEECTTEEEEEEETTS...-EEEECEEEE--TT- CS
        GIDA  91 qvdrelyskevteklen...epnleiieeeveeliveekkvkgvvtedg...etikakavviatGtf 151
                  v r +++ +v e+le+   +  l++  ++  +++ e ++++  + ++g   +t++ ++ +++tG+ 
  CTQ29609.1 305 DVHRYRVAPQVAEVLEArqrTGSLQVQAARLLSISGEGETLRLTLARRGggvQTLSVDHLILTTGPA 371
                 4555555666666666633344566666666666555555555555554222456667999999993 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00014      0.23       2      42 ..       7      50 ..       6      92 .. 0.77
   2 ?    1.9   1.6     0.058        94      44     204 ..     184     373 ..     177     428 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00014
                   EEEE--SHHHHHHHHHHHH...TTT-EEEEESSSGGGSGGGG-- CS
  FAD_binding_2  2 viViGsGlAGLaAAleaae...aGlkvavvekeqefggatawsq 42
                   +++iG+G++G a A+e+ +   +G +v+++e  q+ g   a+s 
     CTQ29609.1  7 IVIIGGGFSGAAVAIELLRlapNGVRVTLLEPRQSPGAGVAYST 50
                   89************98644433999*****99999887777776 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.058
                    -EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHHHHTT----B.................................. CS
  FAD_binding_2  44 gidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeLeelgvpfsr.................................. 105
                     +da++ p+++ a +     l + dt+++ld l+++  + af +++   +  L   g+ + +                                  
     CTQ29609.1 184 ALDAIA-PHARVA-V-MGTGLTMADTVATLDRLGHRSSIVAFSRHGLLSRGNLSGAGATWPGdyqqgslrqrlrqirldvayaaqqglswqvvlda 276
                    555555.554333.3.45667889999999999999999999999999999999999999996555555555555555555553333333334443 PP

                    .CCTS.....SB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEET.TTTCEEEEEESE CS
  FAD_binding_2 106 .tedg.....pvdvrelGglsatartlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenp.esgrevriraka 194
                     +++g     ++ v+++  + ++ r+ +d+ ++r       ++++++l ++      +   + +a++L+  +g+  +  ++   ++g+ +++  ++
     CTQ29609.1 277 vRQQGqriwqALSVADRQRFLRHLRHYWDVHRYR-----VAPQVAEVLEARQ----RTGSLQVQAARLLSISGEGETLRLTLArRGGGVQTLSVDH 363
                    3222233334444444444444455555555542.....3444444444443....6666666666666655544444444443555555666667 PP

                    EEE-----GG CS
  FAD_binding_2 195 vvlatgGfgr 204
                    ++l+tg ++r
     CTQ29609.1 364 LILTTGPAHR 373
                    7777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3407.99
//
Query:       CTQ29610.1  [L=390]
Description: FMNH(2)-dependent alkanesulfonate monooxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-89  301.0   3.3    1.3e-89  300.7   3.3    1.0  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.7   3.3   7.4e-94   1.3e-89       2     313 ..      10     331 ..       9     332 .. 0.98

  Alignments for each domain:
  == domain 1  score: 300.7 bits;  conditional E-value: 7.4e-94
  Bac_luciferase   2 efgvflptrqggalgaas.....aslrylvelaraaEelGfdavwvaehhggpggaldaftllaalaaaTerirlgtavtplytrhPavlAqqaa 91 
                     ++++flpt+++g++ +++     ++l yl ++a aa++lG+ +v+++++ ++    +d++ +++ala+ T+r+r ++av+p++   P+++A++aa
      CTQ29610.1  10 NVFWFLPTHGDGRYLGTTeggrpVDLPYLQQVALAADSLGYYGVLIPTGKSC----EDSWLVASALAPLTRRLRYLVAVRPGL-QPPTLAARMAA 99 
                     689**********999999*********************************....***************************.*********** PP

  Bac_luciferase  92 tLdhlsgGRfglglgtggpaveerrfGv..dhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgp.iPvyvaaaspaglelaa 183
                     tLd+ls+GR+ ++++tgg++ve + +G+  +h+ery+ +rEf++v  rl+rge+vd++Ge+++v+ga +l +p+q+  +P+y++++s+a++++aa
      CTQ29610.1 100 TLDRLSEGRLLINVVTGGDPVENKGDGIflSHSERYQVTREFLDVYTRLLRGEKVDYHGEHIHVEGAEVLFPPVQENgPPLYFGGSSDAAIDVAA 194
                     **********************************************************************9999998788*************** PP

  Bac_luciferase 184 rhadglllageppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraearaliagld..........fyaldsegagreaeaa... 265
                     +  d +l++geppe +ae+++ +r++aa++gr   +++ gi+l+viv++teeeA+a a++lia+ld          f+++ds+g+ r+ +++   
      CTQ29610.1 195 EQIDSYLTWGEPPELVAEKLAVVRERAAARGR---TLQYGIRLHVIVRETEEEAWAAADRLIAHLDddtiaqaqkiFARMDSAGQARMSALHqgs 286
                     ********************************...*********************************************************887 PP

  Bac_luciferase 266 eiqeeedanlwagaadavpdelvaatalvGtpeqvaerlaayaeagvd 313
                     ++ ++ ++nlwag++ ++   ++a+talvG+p+qvaer+++y+++g++
      CTQ29610.1 287 RDNLRIAPNLWAGVGLVR---GGAGTALVGNPQQVAERIREYQALGIS 331
                     889**************9...*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2960.84
//
Query:       CTQ29611.1  [L=647]
Description: Sigma-54 dependent transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-67  224.0   0.0    1.3e-66  223.4   0.0    1.2  1  Sigma54_activat  Sigma-54 interaction domain
    5.4e-22   78.4   0.0    1.6e-21   76.9   0.0    1.8  1  Sigma54_activ_2  Sigma-54 interaction domain
    2.6e-08   34.0   0.0    5.8e-08   32.8   0.0    1.6  1  AAA_5            AAA domain (dynein-related subfamily)
    3.3e-08   33.2   3.4    6.8e-08   32.2   0.2    2.9  2  HTH_8            Bacterial regulatory protein, Fis family
    3.4e-07   30.4   0.0      5e-07   29.9   0.0    1.2  1  NMT1             NMT1/THI5 like
    4.5e-05   23.3   0.0    8.7e-05   22.3   0.0    1.4  1  NMT1_2           NMT1-like family
    0.00014   21.5   0.0    0.00028   20.6   0.0    1.4  1  Phosphonate-bd   ABC transporter, phosphonate, periplasmic su
    0.00041   20.5   0.0     0.0024   18.0   0.0    1.9  2  AAA_2            AAA domain (Cdc48 subfamily)
    0.00066   19.2   0.0     0.0011   18.5   0.0    1.2  1  AAA_7            P-loop containing dynein motor region
    0.00073   20.0   0.0     0.0013   19.2   0.0    1.4  1  AAA              ATPase family associated with various cellul
     0.0047   16.4   0.0      0.014   14.8   0.0    1.7  1  SBP_bac_3        Bacterial extracellular solute-binding prote
     0.0079   16.6   1.1      0.037   14.4   0.3    2.3  2  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.015   15.1   0.4      0.046   13.5   0.4    1.8  1  HTH_30           PucR C-terminal helix-turn-helix domain
      0.016   15.4   0.0      0.059   13.6   0.0    2.0  1  HTH_17           Helix-turn-helix domain
      0.024   14.0   0.0        1.6    8.1   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.037   13.8   0.0      0.094   12.5   0.0    1.7  1  HTH_23           Homeodomain-like domain
      0.075   13.2   2.3       0.63   10.2   0.1    3.2  3  HTH_28           Helix-turn-helix domain
      0.085   13.1   0.1       0.29   11.4   0.0    1.9  1  AAA_22           AAA domain
       0.11   12.5   1.9       0.29   11.2   0.1    2.6  3  HTH_29           Winged helix-turn helix
       0.21   11.9   0.3         10    6.4   0.3    2.6  1  AAA_19           AAA domain
       0.22   11.1   0.0       0.32   10.5   0.0    1.3  1  OpuAC            Substrate binding domain of ABC-type glycine


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.4   0.0   1.5e-69   1.3e-66       8     165 ..      18     175 ..      13     178 .. 0.96

  Alignments for each domain:
  == domain 1  score: 223.4 bits;  conditional E-value: 1.5e-69
                      HHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEEET CS
  Sigma54_activat   8 lkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgGtlfLDe 101
                       k+  + ++k+a+t+++vli+Ge+GtGKe++ar +h++s r+++pf+avnc+a++e+l e+eLFGhekGaFtGA++ + G fe+a+gGtl+LDe
       CTQ29611.1  18 SKAFQSLLDKLAPTEATVLIVGETGTGKEVVARYLHHHSARRQQPFLAVNCGALTESLAEAELFGHEKGAFTGAQQGQPGWFEAAEGGTLLLDE 111
                      5666778899************************************************************************************ PP

                      GGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSE CS
  Sigma54_activat 102 igelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnvi 165
                      igel+l lQ+kLlrvlqe+e++rvGs+k ikv+vr+iaat+ dl++a++e++fredLyyrln+ 
       CTQ29611.1 112 IGELSLPLQVKLLRVLQEREITRVGSRKAIKVNVRVIAATHVDLAQAIRERRFREDLYYRLNIA 175
                      *************************************************************986 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   1.9e-24   1.6e-21       6     138 .]      17     182 ..      15     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 1.9e-24
                      HHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.......................HHHHHHTTTSEEEEE CS
  Sigma54_activ_2   6 aiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.......................ldlleqakggtLylk 76 
                      a++++++ L+++a  ++ v+++Ge G+gke+vAr+Lh+ s++ +++f   ++++l+                         ++e a+ggtL+l 
       CTQ29611.1  17 ASKAFQSLLDKLAPTEATVLIVGETGTGKEVVARYLHHHSARRQQPFLAVNCGALTeslaeaelfghekgaftgaqqgqPGWFEAAEGGTLLLD 110
                      68899*******************************************9999988778899999999999999999998899999********* PP

                      E-TT--HHHHHHHHHHHHH..........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  77 diadlskaeqkeLlellak..........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      +i +ls  +q +Ll +l++          a k ++r+++++  dl+q + + +f e L+++L   ++ +PpL
       CTQ29611.1 111 EIGELSLPLQVKLLRVLQEreitrvgsrkAIKVNVRVIAATHVDLAQAIRERRFREDLYYRLNIAVVPLPPL 182
                      ***************************97559**************************************98 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   6.7e-11   5.8e-08       2     121 ..      35     152 ..      34     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 6.7e-11
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE-...-TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvql...trdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerr 93 
                 vl+vG++GtgK  +a++l +     +++++ v++   t+++ e++l+g+ + +  g ++ +++ +   a eg +l+lDE+ +++   + +Ll++l er+
  CTQ29611.1  35 VLIVGETGTGKEVVARYLHHHSarrQQPFLAVNCgalTESLAEAELFGHEKGAfTGAQQGQPGWFE--AAEGGTLLLDEIGELSLPLQVKLLRVLQERE 131
                 89******************99999999999976333778889*****999655566666665555..77***************************** PP

                 EE..-SSSEEE---......-EEEEEES CS
       AAA_5  94 llleeggelvkaknddllerfrviatan 121
                 +    +++ +k++       +rvia+++
  CTQ29611.1 132 ITRVGSRKAIKVN-------VRVIAATH 152
                 **99999999886.......89999876 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.2   7.9e-11   6.8e-08       8      36 ..     291     319 ..     289     324 .. 0.93
   2 ?    0.0   0.3      0.89   7.6e+02      22      36 ..     568     586 ..     565     591 .. 0.55

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 7.9e-11
                 HHHHHHHHHTTT-HHHHHHHHTS-HHHHH CS
       HTH_8   8 elIeaALertgGnkskAArlLGisRrtLy 36 
                  lI +A+++++ n+s+AA lLGisR tL+
  CTQ29611.1 291 ALIRHAMAHCDDNQSQAAALLGISRHTLR 319
                 58**************************8 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.89
                 HHHHHH....HTS-HHHHH CS
       HTH_8  22 skAArl....LGisRrtLy 36 
                  +AArl    LGi  r+L 
  CTQ29611.1 568 GEAARLlsaeLGIDARSLS 586
                 5666651111677777776 PP

>> NMT1  NMT1/THI5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   5.9e-10     5e-07      18     200 ..     376     554 ..     374     570 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 5.9e-10
                 HTTEEEEEE--SSTTHHHHHHHCTS-SEEEE-HHHHHHHHHTT--EEEEEEEE-S--E.EEEEECCC--SSGGGGTTSEEEE-S-TTHHHHHHHHHHHT CS
        NMT1  18 eeGldVeivepadpsdatelvasgkadfgvsyqesllaarakglpvvsvaallqepls.glivlkdsgikspkDLkGkrigyvgspfekallkallakd 115
                   G++V   e     + + ++a ++ dfg + +   + a+a++ ++  va     p s +++v ++s+i +++DL+Gkri+++++++   ll ++l+ +
  CTQ29611.1 376 SLGVNVLWSEFPAGPQLLHALACNEIDFGTTGEAPPVFAQASNSELMYVAWEPPAPRSvAMVVPQESDIRQLSDLRGKRIALNKGSNVHWLLLQILEDA 474
                 55666666666666777888999999**9999999999999999999999888777651666777777******************************* PP

                 T--GGG-EEEE-.TT-HHHHHHCTSSSEEECEETTTHHHHHH.HTT--EEEE-GGGTT-----SEEEEEEHHHHHH-HHHHHHHHH CS
        NMT1 116 ggdpsdvtlvnvggtslakalltgkvDaaiggyenwegvele.segkelrifaladlgvpdyyslvlitnekllkenpelvkkFlr 200
                 g+  +dv +v +      +a     vDa++  +++   +  + + + elr++a  +  v       + +  ++l+++ ++ +++l+
  CTQ29611.1 475 GLGLNDVRVVYTPPKYPLTASDYLAVDAWM--MWD--PLLSDaEHTGELRVVASGEGRV--NNHQFYLSRRDYLAQHGDIMRRLLT 554
                 *********999555555555556788776..444..4443414445999999999998..5567889999999999999999886 PP

>> NMT1_2  NMT1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0     1e-07   8.7e-05       4     251 ..     347     573 ..     344     576 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1e-07
      NMT1_2   4 ekeqlklGfialtdaapl.vvakekglfakeGltvelekqaswaelrdkllagelDaahvltpapllidlGiggakadmkvlas.lnlnGqaitlsnkl 100
                  +++l++G+++      l +  + +  fa+ G++v ++++ ++++l+ +l+ +e+D +    + p+ ++      ++ m+v+ +  +    a++++++ 
  CTQ29611.1 347 ADRELRIGYQRFGSLGILkARQSLETAFASLGVNVLWSEFPAGPQLLHALACNEIDFGTTGEAPPVFAQASN---SELMYVAWEpPAPRSVAMVVPQE- 441
                 678999*****99999995555556789********************************666677777766...67888877525678889999987. PP

      NMT1_2 101 kdkkvsdakalkdlvakkkaskplkiavtfpgsthdlllrywLaaaGldpeadvklvvvpppqmvanlkagtidgfcvgePwnaqavaegiGvtal..t 197
                      sd ++l dl       ++ +ia    ++ h lll   L+ aGl   +dv++v +pp     +     +d++++ +P  + a++ g    ++   
  CTQ29611.1 442 -----SDIRQLSDL-------RGKRIALNKGSNVHWLLL-QILEDAGLGL-NDVRVVYTPPKYPLTASDYLAVDAWMMWDPLLSDAEHTGE-LRVVasG 525
                 .....999999999.......567899966666666666.6799*****9.9*********9999999999**************999887.4555014 PP

      NMT1_2 198 sqelwkdhPekvlgvredfveknpntaralvkalleAtkwldakkenraeaakl 251
                 ++++   +  ++   r+d+++++ + +r+l+  l+   +++d    +r eaa l
  CTQ29611.1 526 EGRV---NNHQFYLSRRDYLAQHGDIMRRLLTELTHTGQFIDS---HRGEAARL 573
                 5556...34678888999************************4...55666555 PP

>> Phosphonate-bd  ABC transporter, phosphonate, periplasmic substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.3e-07   0.00028      41     114 ..     391     461 ..     374     490 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.3e-07
                     HHHHHHHTTS-SEEE--HHHHHHHHHHS-EEEEEEEEETT--SEEEEEEEEETTSS--SHHHHGG-EEEE--TT CS
  Phosphonate-bd  41 avvealragqvDiaflgplayvqardqagveplatrvrsdGsasyrsviivradsdiqsledLkgktiafvsps 114
                     ++  al+ +++D++ +g  + v a++ ++ e++ + ++    a  + +++v+++sdi++l+dL+gk+ia+   s
      CTQ29611.1 391 QLLHALACNEIDFGTTGEAPPVFAQA-SNSELMYVAWE--PPAPRSVAMVVPQESDIRQLSDLRGKRIALNKGS 461
                     56789999***************996.68899999998..33455667*********************95544 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.8e-06    0.0024       4     140 ..      33     164 ..      31     188 .. 0.81
   2 ?   -0.6   0.0       1.4   1.2e+03      94     108 ..     462     476 ..     459     486 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.8e-06
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---.......----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHH CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselle.......eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregV 95 
                 +++l++g+tg+Gk+ +a+ l  +   ++++++  +++ +l+e           +   +  ++ +pg  +a+egG +llDEi   +              
  CTQ29611.1  33 ATVLIVGETGTGKEVVARYLHHHSA-RRQQPFLAVNCGALTEslaeaelFGHEKGAFTGAQQGQPGWFEAAEGGTLLLDEIGELSL-----------PL 119
                 6899********************9.9***************77653332223444555555677888899999*******99999...........99 PP

                 HHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS- CS
       AAA_2  96 qrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrs 140
                 q  LL++l + ++t    rk    n+ +I+++ ++ ++ ++e+r 
  CTQ29611.1 120 QVKLLRVLQEREITRVGSRKAIKVNVRVIAATHVDLAQAIRERRF 164
                 999999999999998777777777888899998888888886665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.4
                 HHHHHHHHHHH--EE CS
       AAA_2  94 gVqrdLLqileggtl 108
                 +V+ +LLqile++ l
  CTQ29611.1 462 NVHWLLLQILEDAGL 476
                 78899******9876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.3e-06    0.0011      22      75 ..      21      74 ..      16      81 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.3e-06
       AAA_7 22 ysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsa 75
                ++ ll++l   +  vl+vG+tGtGK v+++ l ++  +++  +l +n+ a t++
  CTQ29611.1 21 FQSLLDKLAPTEATVLIVGETGTGKEVVARYLHHHSARRQQPFLAVNCGALTES 74
                6889**************************999999989999999999998887 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.5e-06    0.0013       1     127 [.      35     167 ..      35     172 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.5e-06
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS.STTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk.yvgesekkirelfkeakeka.......kpsilfiDEidalaksrsgseseeeervvnq 88 
                 vl++G  GtGK  +a+ + +++   +++fl +++  l+++    e   + ++ f+ a++ +       +   l++DEi +l               + +
  CTQ29611.1  35 VLIVGETGTGKEVVARYLHHHSarrQQPFLAVNCGALTESlAEAELFGHEKGAFTGAQQGQpgwfeaaEGGTLLLDEIGELSLPL-----------QVK 122
                 799******************8555699**********6644445556777777777777777787755599*********7777...........999 PP

                 HHHHHHHTTTS........SSTEEEEEEESSGGGSTHHHHSTTSSEE CS
         AAA  89 Llteldgvkkk........eskvivigatnrpdkldpallrgRfdrk 127
                 Ll++l++ +          + +v vi+at+   +l +a++ +Rf + 
  CTQ29611.1 123 LLRVLQEREITrvgsrkaiKVNVRVIAATHV--DLAQAIRERRFRED 167
                 9999999999999999999888*****9986..57777775577665 PP

>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.6e-05     0.014      85     175 ..     432     522 ..     370     540 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
                 EEEEEEEEETTSHGTCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHC....TSEEEEESSHHHH.HHHHHTTSSSEEEEEHHHHHHHHHHCCGCCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  85 agqvllvrkkdaskissiksladLkgkkvgvqagstaeellkeelkk....gaeivefdtleea.lqaLkngrvdavvadspvlaylvkknpdkkv 175
                  +++++v+ ++    s+i++l+dL gk+++  +gs+ + ll + l++      ++++++t +   l+a     vda+++ +p l ++ ++ +   v
  CTQ29611.1 432 RSVAMVVP-QE----SDIRQLSDLRGKRIALNKGSNVHWLLLQILEDaglgLNDVRVVYTPPKYpLTASDYLAVDAWMMWDPLLSDAEHTGELRVV 522
                 56789999.54....4688888**************996666544447777446677788888878877888899999999988888777665555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.3   4.3e-05     0.037      11      84 ..      20      83 ..      15     210 .. 0.57
   2 ?   -0.2   0.0       1.3   1.1e+03      47      88 ..     291     325 ..     283     409 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.3e-05
      AAA_16 11 qLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrq 84
                +++s+l++++   +  vl++Ge G+GK  ++r l+++  ++   fl+ +c  l         ++ la+ el+  
  CTQ29611.1 20 AFQSLLDKLAPT-EATVLIVGETGTGKEVVARYLHHHSARRQQPFLAVNCGAL---------TESLAEAELFGH 83
                677888877555.489*******************988888444555555444.........222222222222 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.3
      AAA_16  47 alekdggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 al ++    + ++cd+++s+   +a +  ++r++l +ql++ 
  CTQ29611.1 291 ALIRH----AMAHCDDNQSQ---AAALLGISRHTLRTQLANL 325
                 44555....77899999666...2344444454444444443 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   5.3e-05     0.046       7      34 ..     296     323 ..     295     326 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.3e-05
                 HHHHTTT-HHHHHHHHTS-HHHHHHHHH CS
      HTH_30   7 aylenggnisatAkaLhvHrnTlryRLr 34 
                 a  +++ n s++A+ L+++r+Tlr  L 
  CTQ29611.1 296 AMAHCDDNQSQAAALLGISRHTLRTQLA 323
                 56799*******************9886 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.9e-05     0.059       6      30 ..     306     331 ..     304     334 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.9e-05
      HTH_17   6 EaAelLgvsrstvy.rlirrgelpaa 30 
                 +aA+lLg+sr+t++ +l++ g ++  
  CTQ29611.1 306 QAAALLGISRHTLRtQLANLGLIKSR 331
                 9*************889888888654 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.05        43      24      43 ..      34      53 ..      22      67 .. 0.88
   2 ?    8.1   0.0    0.0018       1.6      93     153 ..      90     148 ..      72     160 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.05
  Mg_chelatase 24 nlllvGppGsGKtmlakrlp 43
                   +l+vG  G+GK ++a+ l+
    CTQ29611.1 34 TVLIVGETGTGKEVVARYLH 53
                  689*************9887 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0018
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlv 153
                   g ++ +pG    a+ G L+LDE+ e++      L + l+++e+t   +++      ++ ++
    CTQ29611.1  90 GAQQGQPGWFEAAEGGTLLLDEIGELSLPLQVKLLRVLQEREITRVGSRKA--IKVNVRVI 148
                   677899********************9998888878888888764444433..33444444 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011     0.094      17      35 ..     301     319 ..     291     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
      HTH_23  17 GlsvreIAreLgvsrrTvy 35 
                  ++++++A++Lg+sr+T++
  CTQ29611.1 301 DDNQSQAAALLGISRHTLR 319
                 4689*************98 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.5   2.1e+03       4      16 ..      46      58 ..      45      65 .. 0.85
   2 ?   10.2   0.1   0.00073      0.63       9      30 ..     297     319 ..     291     324 .. 0.84
   3 ?    0.3   0.1       0.9   7.7e+02      11      30 ..     567     586 ..     563     594 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.5
      HTH_28  4 eiikllaaGhsvr 16
                e++ +++++hs+r
  CTQ29611.1 46 EVVARYLHHHSAR 58
                89********765 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00073
      HTH_28   9 laaGh.svreaArelgisrrtvy 30 
                 +a+++ ++++aA++lgisr t++
  CTQ29611.1 297 MAHCDdNQSQAAALLGISRHTLR 319
                 557888*************9997 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.9
      HTH_28  11 aGhsvreaArelgisrrtvy 30 
                 +G+++r +++elgi+ r+++
  CTQ29611.1 567 RGEAARLLSAELGIDARSLS 586
                 6889999*******999875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00034      0.29       8      51 ..      35      72 ..      30      95 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00034
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst 51
                ++++Ge+GtGK +++r l++   ++      + +++ v++ ++t
  CTQ29611.1 35 VLIVGETGTGKEVVARYLHHHSARR------QQPFLAVNCGALT 72
                79************99999987554......8888899998888 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.9   6.8e+03      40      53 ..     215     228 ..     210     231 .. 0.61
   2 ?   11.2   0.1   0.00034      0.29       8      53 ..     295     337 ..     290     345 .. 0.71
   3 ?   -1.5   0.1       3.2   2.7e+03      37      54 ..     576     597 ..     567     602 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.9
      HTH_29  40 Glaalld.rrrsgrp 53 
                  la l+d ++ +g+ 
  CTQ29611.1 215 SLARLMDySW-PGNI 228
                 5666666666.4655 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00034
      HTH_29   8 laeGvs..tvsqiAkllglsrrtvyrwlkrfeegGlaalld.rrrsgrp 53 
                 +a ++   + sq+A+llg+sr t ++ l      G   l++ rrr+++p
  CTQ29611.1 295 HAMAHCddNQSQAAALLGISRHTLRTQLAN---LG---LIKsRRRPPAP 337
                 44443355999*************998876...55...44446666665 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.2
      HTH_29  37 eegGlaa...lld.rrrsgrpr 54 
                  e G++a    +   rrs+rpr
  CTQ29611.1 576 AELGIDArslSMAlARRSHRPR 597
                 4566666666333356666665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.3     0.012        10     102     136 ..     103     136 ..      24     141 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.012
      AAA_19 102 eeellivDEfqdvd.elqyrLlkallgekkklllvG 136
                 e+ +l+ DE+ +++ +lq++Ll+ l  e++ ++ vG
  CTQ29611.1 103 EGGTLLLDEIGELSlPLQVKLLRVLQ-ERE-ITRVG 136
                 34478888999998888999888887.444.66666 PP

>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00037      0.32       3     114 ..     351     456 ..     349     498 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00037
                 EEEEEESSHHHHHHH..HHHHHHHHHTTEEEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHHHHHHHHHHHHHHEEEEEEEESEEECEEEEEEHHHHHH CS
       OpuAC   3 ivigsknwteqevla..eilkqllekkGykveltnlgstavlfaalasGdiDvypeewtgtayeaykkaveekkglevlgplgagnteglavpkyvaek 99 
                 ++ig++ + +  +l   + l +++ ++G++v + ++ +++ l  ala ++iD+ +   tg a   +++ +++ + ++v+++ +a    +++vp++    
  CTQ29611.1 351 LRIGYQRFGSLGILKarQSLETAFASLGVNVLWSEFPAGPQLLHALACNEIDFGT---TGEAPPVFAQ-ASNSELMYVAWEPPAPRSVAMVVPQES--- 442
                 566777776666665224577899999****************************...9999999999.55577777789*************996... PP

                 HTTTBHHHHCTHHGG CS
       OpuAC 100 ygiksisDLkkpaed 114
                  +i+++sDL  +  +
  CTQ29611.1 443 -DIRQLSDLRGKRIA 456
                 .********665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 4222.19
//
Query:       CTQ29612.1  [L=251]
Description: exonuclease IX (5'-3' exonuclease) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-29  101.6   0.0    5.7e-29  101.1   0.0    1.2  1  5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like do
    6.5e-26   90.8   0.0      1e-25   90.1   0.0    1.3  1  5_3_exonuc    5'-3' exonuclease, C-terminal SAM fold


Domain annotation for each model (and alignments):
>> 5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   0.0   6.4e-33   5.7e-29       2     150 ..       5     150 ..       4     159 .. 0.86

  Alignments for each domain:
  == domain 1  score: 101.1 bits;  conditional E-value: 6.4e-33
  5_3_exonuc_N   2 llLiDgsslifRayyallttsdgeptnavygflnmllklleeekpthlavvfD.a.kkktfRhelypeYKanReetpeelkeqlplikevlealgik 96 
                   ll++D+ +li R++       +g p   v ++l++l +l+ + +pth+++vfD + +++ +Rh+ +peYKa R+++pe+l +++p +++++e+ gi+
    CTQ29612.1   5 LLIVDALNLIRRIHAV-----QGSPC--VDTCLHALEQLIVHSQPTHAVAVFDdEdRAHGWRHQRLPEYKAGRAPMPETLVAEMPTLRAAFEQRGIR 94 
                   8999999999999876.....56664..6899***************9999994445789************************************* PP

  5_3_exonuc_N  97 vlevegyEADDvigtlakr.aee.egvvivsgDkDllQlvednvrvldvkkeelld 150
                   ++  +g EADD+ +tla + a++ ++ +ivs+Dk ++Ql+++++r+ d  ++++ld
    CTQ29612.1  95 CWASPGSEADDLAATLAVKvAQAgHQATIVSTDKGYCQLLSPSIRIRDYFQKRWLD 150
                   *******************5555456**************99***99933344454 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   1.1e-29     1e-25       1      92 [.     160     250 ..     160     251 .] 0.97

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 1.1e-29
  5_3_exonuc   1 vkPeqiidlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenldelkekklkekLeenkeearlskkLatiktdvpleleledlklk 92 
                 v+Peq++d+++L+G ss ++pGv+giG+k Aa+Ll+e+++le+++++l+e+ e k+++kL++++e+a+ ++++a+++td++l+ +l++l+l+
  CTQ29612.1 160 VTPEQLADYWGLAGISSSKVPGVAGIGPKSAAQLLNEFQDLEGLYARLAEVPE-KWRKKLAAHQEMAFTCREVARLQTDLQLDGNLQQLRLT 250
                 89************************************************996.*********************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1962.31
//
Query:       CTQ29613.1  [L=382]
Description: L-1,2-propanediol oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-114  382.2   4.7   2.3e-114  382.0   4.7    1.0  1  Fe-ADH    Iron-containing alcohol dehydrogenase
    1.2e-17   64.4   0.4    3.2e-11   43.4   0.0    2.1  2  Fe-ADH_2  Iron-containing alcohol dehydrogenase
  ------ inclusion threshold ------
        0.2   10.5   0.0       0.29   10.0   0.0    1.1  1  PORR      Plant organelle RNA recognition domain


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.0   4.7  3.8e-118  2.3e-114       3     364 .]      10     374 ..       8     374 .. 0.96

  Alignments for each domain:
  == domain 1  score: 382.0 bits;  conditional E-value: 3.8e-118
                 EEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHHHH CS
      Fe-ADH   3 rivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKaia 101
                 +  fg+ga++ l +++ + g+++alivtd+ ++ ++g+++kv+++l++ag+++++f++v pnpt++ v++++++++ +gad++ia+GGGs+ Dt+Kai 
  CTQ29613.1  10 TAWFGRGAINALTDEAVRRGYRKALIVTDSTLA-RCGVAAKVTDKLDAAGLAWDMFSDVIPNPTIAVVQQGLQAFQRSGADYLIAIGGGSPQDTCKAIG 107
                 568****************************88.***************************************************************** PP

                 HHTT....................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHHH CS
      Fe-ADH 102 lllanpevedyl..gegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEayvs 198
                 ++ +npe++d+   +   ++ ++ +p++a+PTtaGt++evt ++vitdee+ +k++++dp+ +P++a++D +++  +P+++ aatg+Dal+ha+E y++
  CTQ29613.1 108 IIQRNPEFADVRslEGLSPTRQPSVPIFAVPTTAGTAAEVTINYVITDEEQRRKFVCVDPHDIPQVAFIDADMMDAMPPALKAATGVDALTHAIEGYLT 206
                 *****9877777643344556666*************************************************************************** PP

                 HT---TTSSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH..........HHHHH CS
      Fe-ADH 199 kkanplsdalaleairliaknleravadgedleareqmllastlaglafsnaglgavHalahalgalfgiphglanaillpavlrfnaeaaperlaqla 297
                 ++a  l+dal l+ai++ia +l+ +va   d+ a e+m+l++++ag++fsn+glg+vH++ah+lga++++phg+anaillp+v+rfnaea+ e+++++a
  CTQ29613.1 207 RGAWALTDALHLKAIEIIAGALRGSVAG--DAGAGEAMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPHGVANAILLPHVMRFNAEATGEKYRDIA 303
                 **************************66..9***********************************99********************9999******* PP

                 HT...........T--HHHHHHHHHHHHHTT---SHHHHT-TT-HHHHHHHHHT-TSGGGGSSS---HHHH CS
      Fe-ADH 298 ralgge....sdeeaaeeliealrellkelglptsLselgvdeedldklaeaalkdrslannpreltaedv 364
                 ra+g      s  +a e+++ea+ +l++++g+p +L+e+gv +ed+++la+aal+d ++++npre++ +d+
  CTQ29613.1 304 RAMGVRvealSLTAAREAAVEAVCQLNRDVGIPGHLREVGVRKEDIPALAQAALADVCTGGNPREASLADI 374
                 ***999****99*****************************************************998876 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   5.4e-15   3.2e-11       2      98 ..      13     110 ..      12     118 .. 0.95
   2 !   18.8   0.5   1.7e-07     0.001     100     246 ..     132     277 ..     127     280 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 5.4e-15
    Fe-ADH_2   2 igegaleklgellkelelkkvllvadentkka.agekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsakl 98 
                 +g+ga++ l +   +++++k+l+v+d++  +  ++ kv+++l+ ag+ ++++++v +++++  v++ ++a++ +++d ++a+GgG+  D++k +   +
  CTQ29613.1  13 FGRGAINALTDEAVRRGYRKALIVTDSTLARCgVAAKVTDKLDAAGLAWDMFSDVIPNPTIAVVQQGLQAFQRSGADYLIAIGGGSPQDTCKAIGIIQ 110
                 589**************************999899**********************************************************98655 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.7e-07
    Fe-ADH_2 100 vpyvsvpTaaSvDGfaspgaslvvdgkkrtv...akaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaamvqeaaek 195
                 vp+ +vpT+a        +  ++ ++++r +    +  +P   ++D d++ + P +l a+   D+l   +  +  + a ++++ l +++++++  a++ 
  CTQ29613.1 132 VPIFAVPTTAGTAAEVTINYVITDEEQRRKFvcvDPHDIPQVAFIDADMMDAMPPALKAATGVDALTHAIEGYLTRGAWALTDALHLKAIEIIAGALRG 230
                 77888888888888888888888885544443357899**********************999************************************ PP

    Fe-ADH_2 196 lvedkketealeellealalsgigisrpaSGsEHliSHaldmlalkqalHG 246
                  v   ++  a e+++ +  ++g+g+s+ + G  H ++H l + +  ++ HG
  CTQ29613.1 231 SV--AGDAGAGEAMALGQYVAGMGFSNVGLGLVHGMAHPLGAFY--NTPHG 277
                 *9..589999999***************************9999..88888 PP

>> PORR  Plant organelle RNA recognition domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   4.9e-05      0.29     236     281 ..     304     349 ..     291     355 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 4.9e-05
        PORR 236 raVgvlHElLsLtvekrveveklshlrkelglpqklrklllrhpgi 281
                 ra gv  E LsLt  + + ve + +l+++ g+p +lr++ +r+  i
  CTQ29613.1 304 RAMGVRVEALSLTAAREAAVEAVCQLNRDVGIPGHLREVGVRKEDI 349
                 899**********************************997777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2730.70
//
Query:       CTQ29614.1  [L=215]
Description: L-fuculose-1-phosphate aldolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.5e-49  166.0   1.0      1e-48  165.8   1.0    1.1  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.8   1.0   5.6e-53     1e-48       2     186 .]       9     182 ..       8     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 165.8 bits;  conditional E-value: 5.6e-53
                  HHHHHHHHHHHTTSSCTTBCEEEEEETSTTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEECECSSSTB-TTHHHHHHHHHH-TT-SEEEEE--HHHH CS
  Aldolase_II   2 elaeasrllarrglvegtgGniSvrvpeedsflitpsgvdfeeltaedlvvvdldsgevvegkekggkpssetplHlaiykarpdaravvHtHspaav 99 
                  ++++++ ++ r+gl++gt+Gn+Svr   ++++litp+g+++e+lt++++v +d+d g++ +g    + psse+++H a+y+ rpda+avvH H+ +++
   CTQ29614.1   9 QIIDTCLEMTRLGLNQGTAGNVSVRY--QGGMLITPTGIPYEKLTEDKIVFIDAD-GQHEQG----KLPSSEWRFHQAAYQTRPDAQAVVHNHAVHCT 99 
                  7999*********************4..69***********************99.988844....46****************************** PP

                  HHHTCCSTSCHCCSSHHHHC.HSSSEEEEES-SSTTCHHHHHHHHHHHHHS-SEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHHH CS
  Aldolase_II 100 alsalagkeglppltqeaaklllgdevpvipyaapgteelgealaealkedakavllrnHGlltvGetleeAvalaetleeaaeiql 186
                  a+s l  ++++p++++++a+  +g+++p++pya++gt el+e++a alk ++ka ll++HGl+++ ++le+A++la ++e +a+++l
   CTQ29614.1 100 AVSIL--NRPIPAIHYMIAA-AGGNSIPCAPYATFGTRELSEHVAVALK-HRKATLLQHHGLIACEASLEKALWLAHEVEVLAQLYL 182
                  ***77..89***********.899************************8.88********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1781.75
//
Query:       CTQ29615.1  [L=97]
Description: hypothetical protein CH1034_280220 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.018   15.0   0.5      0.022   14.7   0.5    1.1  1  Securin   Securin sister-chromatid separation inhibitor


Domain annotation for each model (and alignments):
>> Securin  Securin sister-chromatid separation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.5   1.2e-06     0.022     150     197 ..       4      50 ..       2      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.2e-06
                 HHHHC----TT--..---------..---------..----------- CS
     Securin 150 ieklklknsPlkleisdedeeqtplldldelspLekpsvdeesesdes 197
                 ++k +++nsPl+++++ded+    +  + ++++++ p +d+es ++e 
  CTQ29615.1   4 LTKNNHENSPLNIQVDDEDHYSPYP-TVADDISVALPLMDDESPKEER 50 
                 78999*******9999999988887.89999************98853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 759.44
//
Query:       CTQ29616.1  [L=436]
Description: L-fucose transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-19   69.3  35.7    2.7e-19   69.3  35.7    2.0  2  MFS_1          Major Facilitator Superfamily
    0.00034   19.6  26.2      0.018   13.9  23.1    2.6  2  Sugar_tr       Sugar (and other) transporter
    0.00093   17.6  14.9      0.012   13.9   5.2    3.0  2  OATP           Organic Anion Transporter Polypeptide (OATP) f
  ------ inclusion threshold ------
       0.15   12.3   0.6       0.33   11.3   0.0    1.8  2  Viral_Beta_CD  Viral Beta C/D like family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3  35.7   6.1e-23   2.7e-19       3     342 ..      31     388 ..      27     397 .. 0.71
   2 ?    1.5   2.8     0.025   1.1e+02     125     171 ..     383     427 ..     377     435 .. 0.58

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 6.1e-23
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa..sslwlllvlrvlqGlg 98 
                  ++fl a a ++  ++lp   +++++++  ++gl+ +++++g+++  +p+G l+ +f+ +  +l+gl+l+a g++l++  a   +++l+l++ ++ ++g
  CTQ29616.1  31 SLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGMLMKKFSYKAGILTGLFLYACGAALFWpAAevMNYTLFLIGLFIIAAG 128
                 445555566666667777.89****************************************************55555334778888************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslg.........................Wravfyilaivsllafv.lfll 170
                  g+l +a++ +++ + p++   + + l+++++s+Gai++ ++g  l+ s++                           + +++i+ ++ ll+++ ++  
  CTQ29616.1 129 LGCLETAANPFVTVLGPESGGHFRLNLAQTFNSFGAIIAVVFGQSLIlSNVPhqpqevldkmtpeqlsawkhslvlsVQTPYMIIVAIVLLVALlIVCT 227
                 ********************************************99967777*****************999998887777777777766665513333 PP

       MFS_1 171 llpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllply.lqevlgls.glllaglllallalvgailallagrl 267
                  +p  +++ + +s +      + a+l+    +++ +   w++l+ +++++ + ++  ++l  y + e  g++ g+  ++  l ++++ ++i+++ +++l
  CTQ29616.1 228 RFPSLQSDDHSDSAQST----FFASLTR---LMRIRHWRWAVLAQFCYVG-AQTACWSYLIRYaIEEIPGMTaGFAANY--LTATMVCFFIGRFTGTWL 316
                 44444444444444333....5555555...5555552265555555554.6666666666654455555555433333..333333333347777777 PP

       MFS_1 268 sdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlapp.eeagtasglfn 342
                 ++r+ +++ l +  ++++l++l+ a+ +     +++ll+l l++ ++++ +p++++l  +++++  + g+ + +++
  CTQ29616.1 317 IRRFAPHNVLAIYAFIAMLLCLLSAFSG----GHVGLLALTLCSAFMSIQYPTIFSLGIKHLGQdTKYGSSFIVMT 388
                 7777775555555555555555555555....558888999999999999************75133333333333 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.025
       MFS_1 125 llsagfslGailgpllgglla.sslgWravfyilaivsllafvlflll 171
                  + +++ +G  +  ++ g+++ ++++ + + ++ a+ +++ f++    
  CTQ29616.1 383 SFIVMTIIGGGIVTPVMGFVSdAAGNIPTAELVPALCFAIIFIF---A 427
                 45556666666666777777734444666666666666666662...2 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9  23.1     4e-06     0.018      44     187 ..      57     215 ..       8     375 .. 0.81
   2 ?   -4.5  10.6       1.5   6.8e+03      54      99 ..     301     346 ..     258     428 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4e-06
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 ++ + gli s+f++G +i  + ag+l+++f++k ++l++ +l+  ga+l   a +  ++ ++++g +++  g+G+  + +  ++  + p++   +   l
  CTQ29616.1  57 TNFQAGLIQSAFYFGYFIIPIPAGMLMKKFSYKAGILTGLFLYACGAALFWPAAEVMNYTLFLIGLFIIAAGLGCLETAANPFVTVLGPESGGHFRLNL 155
                 67899********************************************99888889****************************************** PP

                 HHHHHHHHHHHHHHHHHHHHTSS-.................TTHHHHHHHCCHHHHHHHHHH CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsn.................adgwrillglqlvpallllil 187
                  q++ +fG ++a +fg  l  ++                  a  w+  l l++  + +++++
  CTQ29616.1 156 AQTFNSFGAIIAVVFGQSLILSNVphqpqevldkmtpeqlsA--WKHSLVLSVQTPYMIIVA 215
                 ****************99987777778888888888888442..444444444443332222 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 1.5
                 THHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr  54 iflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 +++v  +iG +++ +l+ rf   ++l+i a++++   +l+a++ g 
  CTQ29616.1 301 ATMVCFFIGRFTGTWLIRRFAPHNVLAIYAFIAMLLCLLSAFSGGH 346
                 3444444555555555555555555555555555555555555533 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   1.7    0.0001      0.47       5      84 ..      28     107 ..      25     187 .. 0.88
   2 !   13.9   5.2   2.7e-06     0.012     276     381 ..     238     342 ..     109     357 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0001
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP   5 llsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgsllla 84 
                 ll+ l ++ a+++ + ++ + ++++ F l++ + gli+s++  g+ ++ +  + + ++      i +g++l a+g+ l+ 
  CTQ29616.1  28 LLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGMLMKKFSYKAGILTGLFLYACGAALFW 107
                 689999999*************************************************999999999*****99999985 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.7e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 276 elkslkdfpkalkrllknpifllvilssvfeillvaGfitFlpky.lEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvs 373
                   +  + f+++l rl++ +     +l++ +++ + ++ + +l +y +E+  +++a  A+ ++ ++ ++++ +G + g +l++++ ++   la +++++ 
  CTQ29616.1 238 SDSAQSTFFASLTRLMRIRHWRWAVLAQFCYVGAQTACWSYLIRYaIEEIPGMTAGFAANYLTAT-MVCFFIGRFTGTWLIRRFAPHN-VLAIYAFIAM 334
                 3345578**************************************99*********999998655.557889************9975.5667777777 PP

                 xxxxxxxx RF
        OATP 374 llslllll 381
                 ll+ll  +
  CTQ29616.1 335 LLCLLSAF 342
                 77777665 PP

>> Viral_Beta_CD  Viral Beta C/D like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       3.9   1.8e+04      52      67 ..     114     129 ..     112     133 .. 0.75
   2 ?   11.3   0.0   7.4e-05      0.33      32      88 ..     189     247 ..     173     256 .. 0.76

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3.9
  Viral_Beta_CD  52 qyvlllaflfviaall 67 
                    +y l+l  lf+iaa l
     CTQ29616.1 114 NYTLFLIGLFIIAAGL 129
                    6888888899998755 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 7.4e-05
  Viral_Beta_CD  32 ettpvektaaasvladnlddqyvlllaflfviaalllcvylksikteedav..ltyfyq 88 
                    + tp +  a  + l   ++  y++++a + ++a+l++c  + s++++  ++   + f+ 
     CTQ29616.1 189 KMTPEQLSAWKHSLVLSVQTPYMIIVAIVLLVALLIVCTRFPSLQSDDHSDsaQSTFFA 247
                    556666666667777777899********************999877655411455655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 3358.71
//
Query:       CTQ29617.1  [L=591]
Description: L-fucose isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-83  278.8   0.1    2.3e-83  278.2   0.1    1.3  1  Fucose_iso_N1  L-fucose isomerase, first N-terminal domain
    7.8e-81  270.0   0.6    1.1e-80  269.4   0.6    1.2  1  Fucose_iso_N2  L-fucose isomerase, second N-terminal domain
    7.2e-55  184.6   0.0    1.3e-54  183.8   0.0    1.4  1  Fucose_iso_C   L-fucose isomerase, C-terminal domain


Domain annotation for each model (and alignments):
>> Fucose_iso_N1  L-fucose isomerase, first N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.2   0.1   3.8e-87   2.3e-83       2     169 .]       7     174 ..       6     174 .. 0.99

  Alignments for each domain:
  == domain 1  score: 278.2 bits;  conditional E-value: 3.8e-87
  Fucose_iso_N1   2 pkiGirpviDgreggvresleeqtmamakavaelleeklkyadgtevevviadttiggvaeaaacaeklkkenvevtitvtpcWcypsetvdldpd 97 
                    pkiGirpviDgr++gvresle+qtm+maka+a+l++ekl++a+g +ve+viadt+i g+ae+aac+ek++++nv+vtitvtpcWcy+set+d+dp 
     CTQ29617.1   7 PKIGIRPVIDGRRMGVRESLEAQTMNMAKATAALISEKLRHACGARVECVIADTCIAGMAESAACEEKFSSQNVGVTITVTPCWCYGSETIDMDPL 102
                    9*********************************************************************************************** PP

  Fucose_iso_N1  98 llkavwgfngterPGaVylaAalaalaqkGlpafriyGkdvqdaddeeipedvkekllrFaraalavaklkg 169
                     +ka+wgfngterPGaVylaAalaa++qkG+paf+iyG+dvqdadd++ip+dv+ekllrFara+lava++kg
     CTQ29617.1 103 RPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLLRFARAGLAVASMKG 174
                    ***********************************************************************8 PP

>> Fucose_iso_N2  L-fucose isomerase, second N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.4   0.6   1.9e-84   1.1e-80       1     180 []     175     354 ..     175     354 .. 0.99

  Alignments for each domain:
  == domain 1  score: 269.4 bits;  conditional E-value: 1.9e-84
                    -EEEEESS-STT-GGGS--HHHHHHCT--EEEEE-THHHHHHHHTT-S-HHHHHHHHHHHHHH-EE---TSTGGGS-TTTHHHHHHHHHHHHHHHH CS
  Fucose_iso_N2   1 ksylsiGsvsmGiagsivdadflqeylglraelvdmveilrrieeeiydkeeyekalaWvkenckegedkneeekkkskeekdkewefvvkmtlii 96 
                    ksyls+G+vsmGiagsivd++f++++lg+++++vdm+e++rri+++iyd++e+e+alaW++++++ ged+n+e+ k++++++++ +++++ ++++i
     CTQ29617.1 175 KSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRIDQKIYDETELEMALAWADKHFRYGEDQNAEQYKRNETQSRAVLKESLLIAMCI 270
                    8*********************************************************************************************** PP

                    HHHHH--THHHHTT-HHHHT---EEEEEE--TTTTTTTS--SHHHHHHHCSSEETTEE-----EEETT-HHHHHHHHHHHHHH- CS
  Fucose_iso_N2  97 rdllkgnpklaelgfeeealGknaiaaGfqGqrqWtdflpngdfteallnssfdwnGareplvlatendslngvsmllgklltn 180
                    rd+++gnpklae g  ee+lG+naiaaGfqGqr+Wtd++pngd +eallnssfdwnG+rep+v+atendslngv+ml+g+ lt+
     CTQ29617.1 271 RDMMQGNPKLAEKGLVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEALLNSSFDWNGVREPFVVATENDSLNGVAMLMGHQLTG 354
                    *********************************************************************************996 PP

>> Fucose_iso_C  L-fucose isomerase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   0.0   2.1e-58   1.3e-54       1     143 []     390     554 ..     390     554 .. 0.99

  Alignments for each domain:
  == domain 1  score: 183.8 bits;  conditional E-value: 2.1e-58
                   EE-SS---GGGEE-T.................HHHHHHHHT-EEEE--TTT-TT--EEEE-B--TT-EEEEEEEEEETTTEEE.EEEEEEEE----H CS
  Fucose_iso_C   1 linsGnaaldgaars.................sdvesclkatelkpaareyfrgggfgsvegtikpgpvTllRlnlikgdGkvklqiaeGefvdlpe 80 
                   linsG+aaldg++++                 s++++cl+ate++pa +eyfrgggf+s+++t++++p+T++R+n+ikg+G+v lqiaeG++v lp+
    CTQ29617.1 390 LINSGSAALDGSCQQrdaqgnptmkphweieqSEADACLAATEWCPAIHEYFRGGGFSSRFLTEGGVPFTMTRVNIIKGLGPV-LQIAEGWSVALPK 485
                   79*********************************************************************************.************* PP

                   HHHHHHHHHH-TTS-BEEEEE---SS.......HHHHT-SSSEEEEEES--HHHHHHHHHHHT--EE.E- CS
  Fucose_iso_C  81 etfgslgvrtipewpttffkprltgk.......svmenwganHvavvyGhvgkdlielakyLripvvemh 143
                   +++++l+ rt+++wptt+f+prltgk       svm+nwganH+++++Ghvg+d+i+la++Lripv+ mh
    CTQ29617.1 486 AMHDQLDARTNSTWPTTWFAPRLTGKgpfsdvySVMANWGANHGVLTIGHVGADFITLAAMLRIPVC-MH 554
                   *******************************************************************.98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4357.00
//
Query:       CTQ29618.1  [L=472]
Description: L-fuculokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-79  265.7   0.0    5.2e-79  265.3   0.0    1.2  1  FGGY_N       FGGY family of carbohydrate kinases, N-terminal 
    1.6e-23   83.5   0.2    2.6e-22   79.5   0.2    2.5  1  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
    1.4e-06   28.1   0.2     0.0082   15.7   0.0    2.3  2  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.3   0.0   8.7e-83   5.2e-79       1     245 []       5     249 ..       5     249 .. 0.99

  Alignments for each domain:
  == domain 1  score: 265.3 bits;  conditional E-value: 8.7e-83
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SST..T--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE- CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspke..gwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynail 97 
                 +il+lDcG+t+++a+++d++g+++a+a ++++++++ e  +w+++++e+i+q++a+++r++ +q+   ++ +++I +++++++++l+D+++  Ly++i+
  CTQ29618.1   5 VILVLDCGATNVRAMAVDRQGNIIARAATANASDIAAEksDWHQWSLEAIMQRFADCCRQIHDQL--ASCTVRGITVTTFGVDGALVDEQGALLYPIIS 101
                 589****************************999887777*************************..******************************** PP

                 TT--TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-HHHHHHT CS
      FGGY_N  98 wkdrrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnikklewdeellail 196
                 wk++rta+++e++++ + + +l+++ g+++++++tl+kl Wlken+p+ +++++++l+i++++++rLtg+f+td t+a++s+++++++++++  +l+++
  CTQ29618.1 102 WKCPRTAAVMENISQYMPARQLQQIAGVGAFAFNTLYKLVWLKENHPQLLAQAHAWLFISSLINHRLTGEFTTDLTMAGTSQMLDLRQRDFSAPILQAT 200
                 *************************************************************************************************** PP

                 T--GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 197 gipeelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 ++p++l+P+lve+++ ig+l pe+aa lGl  g+pv+++g+D+q+a++G
  CTQ29618.1 201 DLPRRLFPRLVEAGQPIGALLPEAAALLGLPVGIPVISAGHDTQFALFG 249
                 ************************************************9 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.2   4.4e-26   2.6e-22       3     196 ..     259     438 ..     258     440 .. 0.76

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 4.4e-26
      FGGY_C   3 vslGTssflllvgtkpvisehglltpva...gedgkpeyalegsiavagslvawlldnl.glreeirdageveeslaelaaaeavada..ggvvfvpaf 95 
                 +s GT+++l++  + +v ++  l+   +   + d++p  ++ g +  a+++++w+++ l  +        +  ++++ l   +++ ++  +gv + +++
  CTQ29618.1 259 LSSGTWEILMVR-SAQV-DTSLLCDYSGstcELDSQPGRYNPGMQWLASGVLEWVRKLLwSA--------D--TPWQTLIDEAQAIPPgaQGVRMQCDL 345
                 689*****9993.3333.444444444433333488*********************94333........2..45554444444443300333333333 PP

      FGGY_C  96 sglrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilA 194
                          ++  + + g++ +tt +h++rAale++  ql+++l++lek  g   ++l+++GGgs+n l++q+ A+ lg+p++++++ae+t+ GaA+ +
  CTQ29618.1 346 --------LASQHAGWQGVTLNTTRGHFYRAALEGLSDQLAQHLQTLEKIGGFRAKELLLVGGGSRNALWNQIKANRLGIPIKVLDDAETTVAGAAMFG 436
                 ........2233344799*******************************************************************************98 PP

      FGGY_C 195 av 196
                  +
  CTQ29618.1 437 WY 438
                 76 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   6.1e-05      0.36       4      51 ..      10      58 ..       8     127 .. 0.68
   2 !   15.7   0.0   1.4e-06    0.0082     191     267 .]     366     436 ..     356     436 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.1e-05
                 EE-SSEEEEEEEETTTEEEEEEEE--.TTS-HHH.........HHHHHH CS
  BcrAD_BadFG  4 DgGsTttkavlmdekgevlgrgitns.anlesvrfeaaekvleealtea 51
                 D G+T ++a+ +d++g++++r+ t   + + +++ +    +le +++  
   CTQ29618.1 10 DCGATNVRAMAVDRQGNIIARAATANaSDIAAEKSDWHQWSLEAIMQRF 58
                 9****************99998775524555555444444444444333 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.4e-06
                  HHHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH.....HHHH-S-EE--GGGGGHHHHHHHHHH CS
  BcrAD_BadFG 191 aedIlaglhraialrvialisrsggvtdevtltGGvakneaavkelrklvkenygevkininpdsiytgalGAalfA 267
                   ++ l+gl  ++a+ +  l +  g++ +e++l+GG ++n     +l + +k n ++ +i++  d++ t a GAa+f+
   CTQ29618.1 366 YRAALEGLSDQLAQHLQTLEKIGGFRAKELLLVGGGSRN-----ALWNQIKANRLGIPIKVLDDAETTVA-GAAMFG 436
                  567899*********************************.....677779**************998765.999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3453.18
//
Query:       CTQ29619.1  [L=140]
Description: L-fucose mutarotase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-37  126.9   0.0    7.7e-37  126.7   0.0    1.0  1  RbsD_FucU    RbsD / FucU transport protein family
  ------ inclusion threshold ------
       0.08   12.8   0.0       0.12   12.2   0.0    1.4  1  Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit


Domain annotation for each model (and alignments):
>> RbsD_FucU  RbsD / FucU transport protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.0   8.6e-41   7.7e-37       2     134 .]       4     139 ..       3     139 .. 0.91

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 8.6e-41
                 TSSTTS-HHHHHHHHH--TT-EEEEE-TTS-HHCCSCEEE.-CBTTBS-HHHHHHHHHCTS-EEEEEEETCH....HHHT...HHHHHHHHHHCCCCCC CS
   RbsD_FucU   2 kksgilnpeLlkvlaelGHgDeiviaDaglPipsgveridlalragvpsfldvleavlselpvekvivaeev....keen...pevleelkellakaee 93 
                  +s++++peLlkvlae+GHgDei+++Da++P++s+      ++ra+++++ d+l+a++ +++++  + +  v    +e++   p+v ++++++l++++ 
  CTQ29619.1   4 TISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQ---VIRADGLRVSDLLQAIIPLFELD-SYAPPVVmmaaVEGDaldPTVEQRYRQALSAQAP 98 
                 689********************************877...9**********************.555544467774444688************9887 PP

                 ---EEEE-HHHHHHHGGGCSEEEE-S--STT--EEEEE--- CS
   RbsD_FucU  94 ekeieeveheefkerakkakavvrTGEttpYaniiLkkGVv 134
                   +i ++++++f++ra+ka+a+v TGE+++Y+ni+LkkGV+
  CTQ29619.1  99 CPDIVRIDRFAFYDRAQKAFAIVITGECAKYGNILLKKGVT 139
                 889************************************96 PP

>> Oxidored_q6  NADH ubiquinone oxidoreductase, 20 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.4e-05      0.12      66      89 ..     110     133 ..      70     139 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
                  HHHHGGGSSEEEEESHHHHH-TGG CS
  Oxidored_q6  66 lkelaekakaviavGtCAafGGip 89 
                  +++ a+ka a++  G+CA +G+i 
   CTQ29619.1 110 FYDRAQKAFAIVITGECAKYGNIL 133
                  67889*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       208  (0.0116013); expected 358.6 (0.02)
Passed bias filter:                      203  (0.0113224); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1137.22
//
Query:       CTQ29620.1  [L=236]
Description: DNA-binding transcriptional activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-44  150.0   0.0      1e-43  149.1   0.0    1.4  2  DeoRC           DeoR C terminal sensor domain
    2.6e-19   68.7   3.0    5.5e-18   64.5   3.2    2.3  2  HTH_DeoR        DeoR-like helix-turn-helix domain
      1e-10   41.4   1.6    2.4e-10   40.2   1.6    1.6  1  HTH_11          HTH domain
    1.8e-07   31.1   0.5    4.3e-07   29.9   0.5    1.6  1  HTH_Mga         M protein trans-acting positive regulator (MG
    1.1e-06   28.2   0.4    2.6e-06   27.0   0.3    1.7  2  GntR            Bacterial regulatory proteins, gntR family
     0.0003   20.6   0.0    0.00056   19.7   0.0    1.3  1  TrmB            Sugar-specific transcriptional regulator TrmB
    0.00035   20.5   0.8    0.00068   19.6   0.8    1.5  1  HTH_Crp_2       Crp-like helix-turn-helix domain
     0.0082   16.0   0.1      0.013   15.3   0.1    1.3  1  TFIIE_alpha     TFIIE alpha subunit
     0.0082   15.6   0.2      0.018   14.6   0.2    1.6  1  Sigma70_r4      Sigma-70, region 4
  ------ inclusion threshold ------
      0.011   15.6   0.4      0.031   14.2   0.2    1.7  2  HTH_36          Helix-turn-helix domain
       0.02   15.5   0.1      0.044   14.4   0.1    1.5  1  Mga             Mga helix-turn-helix domain
      0.042   13.9   0.3      0.042   13.9   0.3    1.7  1  HTH_9           RNA polymerase III subunit RPC82 helix-turn-h
      0.044   13.6   0.2       0.13   12.1   0.2    1.8  1  HTH_23          Homeodomain-like domain
      0.053   12.9   0.0      0.074   12.4   0.0    1.2  1  DUF1670         Protein of unknown function (DUF1670)
      0.056   13.4   0.1        1.4    8.9   0.0    2.2  2  DUF977          Bacterial protein of unknown function (DUF977
      0.057   13.3   0.3       0.14   12.0   0.3    1.7  1  HTH_AsnC-type   AsnC-type helix-turn-helix domain
        0.1   12.6   0.1       0.24   11.5   0.1    1.6  1  Put_DNA-bind_N  Putative DNA-binding protein N-terminus
       0.14   11.7   1.3       0.23   11.1   0.4    1.8  2  HTH_24          Winged helix-turn-helix DNA-binding
       0.15   12.0   0.1       0.35   10.8   0.1    1.6  1  Phage_NinH      Phage NinH protein
       0.15   12.4   0.2       0.33   11.3   0.2    1.5  1  Rrf2            Transcriptional regulator


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       6.5   5.8e+03      24      41 ..      14      31 ..       8      35 .. 0.63
   2 !  149.1   0.0   1.1e-46     1e-43       2     159 ..      76     232 ..      75     233 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.5
       DeoRC 24 fldaGtTtlelaraLaek 41
                +  ++ Tt+ l ++L+ +
  CTQ29620.1 14 ITHSSLTTETLSKQLNVS 31
                445566777777776655 PP

  == domain 2  score: 149.1 bits;  conditional E-value: 1.1e-46
       DeoRC   2 naeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflga 100
                 ++++K++IA++A+++i +g++i+lda++T+++lar+L+++ +l+v+Tns ++++eL+++++i++   GG++++k + +v+p+ +++l+++++d++++++
  CTQ29620.1  76 HYAHKADIAREALAWIDEGMVIALDASSTCWYLARQLPDR-PLHVFTNSQPICQELAKRDQITLTCSGGTLQRKYGCYVNPALISQLKSLEIDLFIFSC 173
                 7899***********************************9.********************************************************** PP

       DeoRC 101 ngidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitD 159
                 +gid++g l++s+  +a +k+ l+++a++ +ll+D+sKf++++ +ri++l++++++++D
  CTQ29620.1 174 EGIDPQGALWDSNAFNADFKSILLKRAAQSLLLIDKSKFNRSGEARIGHLDDVTHIVSD 232
                 **********************************************************9 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   3.2   6.1e-21   5.5e-18       1      56 [.       5      60 ..       5      61 .. 0.98
   2 ?    1.8   0.0      0.23   2.1e+02      34      52 ..     134     153 ..     125     156 .. 0.73

  Alignments for each domain:
  == domain 1  score: 64.5 bits;  conditional E-value: 6.1e-21
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsiss 56
                R+++i++ll  + +l++e l+ +l+vS +TiRRDL+eL++qg++ R+hG+a++i++
  CTQ29620.1  5 RQQAIVDLLITHSSLTTETLSKQLNVSRETIRRDLSELQAQGKVLRNHGRAKVIHQ 60
                9****************************************************998 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.23
    HTH_DeoR  34 DLneLeeqgl.ltRthGGav 52 
                 D  +L+ +g  l R +G++v
  CTQ29620.1 134 DQITLTCSGGtLQRKYGCYV 153
                 555555554449******86 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   1.6   2.6e-13   2.4e-10       1      43 [.       5      46 ..       5      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 2.6e-13
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelg 43
                R+++i+ lL+ + + ++ e+L+++LnvSr t+rrd+ +L+++g
  CTQ29620.1  5 RQQAIVDLLITHSS-LTTETLSKQLNVSRETIRRDLSELQAQG 46
                89*******77777.**************************99 PP

>> HTH_Mga  M protein trans-acting positive regulator (MGA) HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.5   4.8e-10   4.3e-07       5      46 ..       4      44 ..       2      49 .. 0.95

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 4.8e-10
     HTH_Mga  5 krklkLlelLteneksltldelakeLglseltlqsdiseLne 46
                +r++ +++lL++  +slt+ +l+k+L+ s+ t++ d+seL++
  CTQ29620.1  4 ARQQAIVDLLIT-HSSLTTETLSKQLNVSRETIRRDLSELQA 44
                79**********.***************************95 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.3   2.9e-09   2.6e-06      21      61 ..      16      55 ..       6      58 .. 0.90
   2 ?   -2.4   0.0       4.4   3.9e+03      37      46 ..      80      89 ..      70     104 .. 0.61

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.9e-09
                TSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCE CS
        GntR 21 GdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrG 61
                ++ L + + L+++++Vsr t+R+ L++L+a+g v r++gr+
  CTQ29620.1 16 HSSL-TTETLSKQLNVSRETIRRDLSELQAQGKVLRNHGRA 55
                6789.999*******************************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.4
                -HHHHHHHHH CS
        GntR 37 srttvReALr 46
                ++   ReAL 
  CTQ29620.1 80 KADIAREALA 89
                5556677775 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   6.2e-07   0.00056      17      61 ..      12      57 ..       7      62 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.2e-07
                HH.HHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESSTTTE CS
        TrmB 17 Ll.klgpatadeiaeelgvprskvYevLrsLedkGlVerekgrpkl 61
                Ll ++ ++t+++++++l+v+r ++ + L++L   G V r++gr k+
  CTQ29620.1 12 LLiTHSSLTTETLSKQLNVSRETIRRDLSELQAQGKVLRNHGRAKV 57
                5559************************************999765 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.8   7.6e-07   0.00068      20      56 ..      17      54 ..       2      63 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 7.6e-07
                EEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEET.EE CS
   HTH_Crp_2 20 lpltqeelAsmlGltretvsrilseLkreglisrg.rr 56
                 +lt e l+  l+++ret+ r lseL+ +g + r+ +r
  CTQ29620.1 17 SSLTTETLSKQLNVSRETIRRDLSELQAQGKVLRNhGR 54
                479***************************88854233 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   1.5e-05     0.013      17      54 ..       8      45 ..       2      60 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
                 HHHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHC CS
  TFIIE_alpha 17 lvldvLlekgevteedlakelkidlnelrklLnrLyea 54
                  ++d L++++ +t e l+k+l++ ++ +r+ L +L+ +
   CTQ29620.1  8 AIVDLLITHSSLTTETLSKQLNVSRETIRRDLSELQAQ 45
                 689*****************************999865 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2     2e-05     0.018       8      39 ..       5      37 ..       3      41 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2e-05
                HHHHHHHHHH.TTT--HHHHHHHHTS-HHHHHH CS
  Sigma70_r4  8 rerevlelrf.geglTleEIgerlgiSrerVrq 39
                r++ ++ l      lT e ++++l++Sre++r+
  CTQ29620.1  5 RQQAIVDLLItHSSLTTETLSKQLNVSRETIRR 37
                88888888888899******************7 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   3.4e-05     0.031      28      53 ..      21      46 ..      17      47 .. 0.91
   2 ?   -2.8   0.0       7.2   6.4e+03      30      50 ..     144     165 ..     143     165 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.4e-05
      HTH_36 28 qetlakrlglsknTvsraikeLeqlG 53
                 etl+k+l++s++T++r + eL   G
  CTQ29620.1 21 TETLSKQLNVSRETIRRDLSELQAQG 46
                79********************8776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.2
      HTH_36  30 tlakrlglskn.TvsraikeLe 50 
                 tl++++g+ +n   ++ +k+Le
  CTQ29620.1 144 TLQRKYGCYVNpALISQLKSLE 165
                 6777777775545666666665 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   4.9e-05     0.044      21      55 ..       9      43 ..       4      50 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.9e-05
                HHHHHHHHSEEEHHHHHHHCT--HHHHHHHHHHHH CS
         Mga 21 llkflfeeeevsieelaqelyiSestlkrkikeln 55
                ++++l+++ ++++e l+++l +S+ t+ r++ el+
  CTQ29620.1  9 IVDLLITHSSLTTETLSKQLNVSRETIRRDLSELQ 43
                678999*************************9997 PP

>> HTH_9  RNA polymerase III subunit RPC82 helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   4.7e-05     0.042      16      51 ..       7      42 ..       4      48 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.7e-05
                HHHHHHHHHHSSBEHHHHHHHHSSTHHHHHHHHHHH CS
       HTH_9 16 akVvetLlrkgrltlrelvkktkLsldqVkksLvvL 51
                +++v++L+ ++ lt   l+k++++s+  +++ L+ L
  CTQ29620.1  7 QAIVDLLITHSSLTTETLSKQLNVSRETIRRDLSEL 42
                79****************************999877 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00015      0.13       7      36 ..       5      37 ..       2      44 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
      HTH_23  7 Rlrillllae...GlsvreIAreLgvsrrTvyr 36
                R++++  l+     l++++ +++L+vsr T++r
  CTQ29620.1  5 RQQAIVDLLIthsSLTTETLSKQLNVSRETIRR 37
                677666666557899****************98 PP

>> DUF1670  Protein of unknown function (DUF1670)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.2e-05     0.074     106     146 ..      19      58 ..      14      87 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.2e-05
     DUF1670 106 ltqsDlalllgvstrtvskqvkeyqeeegivlptrGaikDi 146
                 lt + l+  l+vs +t++++ +e+ +++g vl   G  k i
  CTQ29620.1  19 LTTETLSKQLNVSRETIRRDLSEL-QAQGKVLRNHGRAKVI 58 
                 89999999****************.9********9998866 PP

>> DUF977  Bacterial protein of unknown function (DUF977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0015       1.4      16      66 ..       8      59 ..       2      65 .. 0.86
   2 ?    2.4   0.0      0.16   1.5e+02      82     112 ..     104     133 ..      91     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0015
      DUF977 16 riiGlvkkneritisdleritGvgrtsvrkylvdvlerGdlir.pGkyGvfr 66
                 i+ l+  +  +t++ l + + v r+++r+ l +  ++G ++r +G+  v +
  CTQ29620.1  8 AIVDLLITHSSLTTETLSKQLNVSRETIRRDLSELQAQGKVLRnHGRAKVIH 59
                58888889999****************************9876489988865 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.16
      DUF977  82 tdqtlirklpdgelrrydrsqviilgelrks 112
                 t   l r+lpd  l  + +sq i + el k 
  CTQ29620.1 104 TCWYLARQLPDRPLHVFTNSQPI-CQELAKR 133
                 556789**************986.6666554 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   0.00016      0.14       7      36 ..       8      37 ..       7      46 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00016
  HTH_AsnC-type  7 kILeaLqedaRisyaeLAervGlSestvlr 36
                   +I+++L   ++++ + L++++++S++t++r
     CTQ29620.1  8 AIVDLLITHSSLTTETLSKQLNVSRETIRR 37
                   799*************************98 PP

>> Put_DNA-bind_N  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00027      0.24      31      49 .]      22      40 ..      17      40 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00027
                    HHHHHHCTS-HHHHHHHHH CS
  Put_DNA-bind_N 31 teLaealgvtaaqvRKDLS 49
                    ++L+++l+v+  ++R+DLS
      CTQ29620.1 22 ETLSKQLNVSRETIRRDLS 40
                    68****************8 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   0.00025      0.23       5      46 ..       6      47 ..       4      48 .. 0.91
   2 ?   -3.3   0.0       7.9   7.1e+03      32      40 ..     103     111 ..     102     112 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00025
      HTH_24  5 drkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGl 46
                + +I  lL  +++++   L+++l++S+ t++r l +L+ +G 
  CTQ29620.1  6 QQAIVDLLITHSSLTTETLSKQLNVSRETIRRDLSELQAQGK 47
                56899999************************9999999996 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.9
      HTH_24  32 stvnrrlkr 40 
                 st+++  ++
  CTQ29620.1 103 STCWYLARQ 111
                 899997665 PP

>> Phage_NinH  Phage NinH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00039      0.35       6      43 ..       7      45 ..       2      55 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00039
  Phage_NinH  6 ktiPdlLvetyGnqtEv.ARrlkcsRatvRkYvrDkeak 43
                + i dlL+      tE   ++l+ sR t+R+ + + +a+
  CTQ29620.1  7 QAIVDLLITHSSLTTETlSKQLNVSRETIRRDLSELQAQ 45
                578999999999999963789**********99988876 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00037      0.33      24      61 ..      17      54 ..       7      56 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00037
                C-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
        Rrf2 24 epvsseeiaerqnispsylekilakLrkaglvksvrGk 61
                +++++e+++++ n+s++ +++ l++L+ +g v    G+
  CTQ29620.1 17 SSLTTETLSKQLNVSRETIRRDLSELQAQGKVLRNHGR 54
                4599**************************98777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1964.28
//
Query:       CTQ29621.1  [L=366]
Description: putative methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-31  107.7   0.7    7.5e-31  106.4   0.1    2.0  2  RlmM_FDX  RlmM ferredoxin-like domain
    7.5e-09   35.9   0.0    9.3e-08   32.4   0.0    2.1  2  FtsJ      FtsJ-like methyltransferase
    5.4e-05   22.7   0.5       0.69    9.6   0.0    3.5  3  DUF4222   Domain of unknown function (DUF4222)
  ------ inclusion threshold ------
      0.035   14.0   0.0      0.066   13.1   0.0    1.4  1  Spt5-NGN  Early transcription elongation factor of RNA pol II
       0.14   12.1   0.0        0.3   11.0   0.0    1.5  2  MIT_C     Phospholipase D-like domain at C-terminus of MIT


Domain annotation for each model (and alignments):
>> RlmM_FDX  RlmM ferredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.1   2.1e-34   7.5e-31       1      71 []       1      71 [.       1      71 [. 0.99
   2 ?   -2.2   0.0       1.7   6.2e+03      33      50 ..     314     331 ..     313     342 .. 0.62

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 2.1e-34
    RlmM_FDX  1 MsslllycRaGFEkdcAaElqekaaelevaGyvkakknsgyvlfeleeaeaaeellkkldlkeliFaRqll 71
                M++++lycR+GFEk+cAaE+++kaa+lev+G++++k++sgyv+fe ++++++e+l+++l++++liFaRq++
  CTQ29621.1  1 MNKVVLYCRPGFEKECAAEITDKAARLEVFGFARVKEDSGYVIFEGYQQDDGEKLVRDLPFSSLIFARQMF 71
                99********************************************************************8 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
    RlmM_FDX  33 vkakknsgyvlfeleeae 50 
                  ++ +n +y++ +l+e+ 
  CTQ29621.1 314 EEVSQNLAYIQAQLDEHG 331
                 567778888888775443 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.092   3.3e+02     123     151 ..      95     123 ..      71     126 .. 0.91
   2 !   32.4   0.0   2.6e-11   9.3e-08       3      96 ..     186     279 ..     184     329 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.092
                 CCCECCCEEEECCCHCCCHHHHHHHHHCC CS
        FtsJ 123 kllkpggtfvlkifrgeeteallkqlkkf 151
                  ++++gg + +++ +  e+++l+k+++kf
  CTQ29621.1  95 GVVEKGGELRVEVADTNESKELMKFCRKF 123
                 6899*********************9987 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 2.6e-11
                 CCHHHHHHHHHHHHT.......-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS..HHH..TTEEEECS-C.CCSSHHHHHCHCHHHSSEE CS
        FtsJ   3 sRsayKLleidekfk.......lfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..apl..pgvttiqgdi.tdpetiekikealserkvd 89 
                 sRs +KL+e+ + f         + +g+ +vDlga+PGgw+  l++r      v +vD +pm  +++   +vt ++ d  +   ++++i+         
  CTQ29621.1 186 SRSTLKLEEAFHVFIpadewdeRLANGMYAVDLGACPGGWTYQLVKRN---MWVSSVDNGPMaqSLMdtGQVTWLREDGfRYRPNRNNIS--------- 272
                 89******999888433333334557788******************3...57*********6534465677777666415555555444......... PP

                 EEEE--S CS
        FtsJ  90 lvvsDga 96 
                  +v+D++
  CTQ29621.1 273 WMVCDMV 279
                 5666665 PP

>> DUF4222  Domain of unknown function (DUF4222)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00057         2      26      42 ..       4      20 ..       1      22 [. 0.86
   2 ?    0.8   0.0      0.11   3.8e+02      22      36 ..     249     264 ..     247     269 .. 0.85
   3 !    9.6   0.0   0.00019      0.69       3      21 ..     336     354 ..     334     357 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00057
     DUF4222 26 rVtFrRdGYehpcvapl 42
                 V + R+G+e +c+a +
  CTQ29621.1  4 VVLYCRPGFEKECAAEI 20
                599**********9876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.11
     DUF4222  22 vdenrVtFrR.dGYeh 36 
                 +d+ +Vt  R dG+ +
  CTQ29621.1 249 MDTGQVTWLReDGFRY 264
                 5778******999876 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00019
     DUF4222   3 iqpgdiYrDkrGvvVkvis 21 
                 iq +++Y+D+  v+V+v++
  CTQ29621.1 336 IQARQLYHDREEVTVHVRR 354
                 899**************97 PP

>> Spt5-NGN  Early transcription elongation factor of RNA pol II, NGN section
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.9e-05     0.066       6      66 ..       7      61 ..       4      73 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.9e-05
    Spt5-NGN  6 kctagqErevalslmkkilelakkenleIkSvfapdelkGyiyvEAdrkaaveralegipn 66
                 c++g E+e a+++  k    a+  +le++    ++e +Gy++ E  ++++ e++++++p 
  CTQ29621.1  7 YCRPGFEKECAAEITDK----AA--RLEVFGFARVKEDSGYVIFEGYQQDDGEKLVRDLPF 61
                59************888....44..489***************************999886 PP

>> MIT_C  Phospholipase D-like domain at C-terminus of MIT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         3   1.1e+04      32      68 ..     114     122 ..      92     144 .. 0.55
   2 ?   11.0   0.0   8.5e-05       0.3      60      95 ..     311     346 ..     287     355 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3
       MIT_C  32 rnlvrllellvkkskklkkikLlTsedeeeedeqken 68 
                 + l++++                             +
  CTQ29621.1 114 KELMKFCR----------------------------K 122
                 33444443............................2 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 8.5e-05
       MIT_C  60 eeedeqkenleelkesleklgielevefsstihdre 95 
                 ++ +e+++nl+ ++++l ++g++ +++ ++  hdre
  CTQ29621.1 311 KRYEEVSQNLAYIQAQLDEHGVNAQIQARQLYHDRE 346
                 4458999****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2994.94
//
Query:       CTQ29622.1  [L=131]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-23   81.6   6.8    3.6e-23   81.6   6.8    1.4  2  DUF423           Protein of unknown function (DUF423)
     0.0034   17.4   7.8     0.0034   17.4   7.8    2.1  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> DUF423  Protein of unknown function (DUF423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   6.8     4e-27   3.6e-23       1      88 []      20     106 ..      20     106 .. 0.97
   2 ?   -3.9   0.1       1.9   1.7e+04      56      61 ..     114     119 ..     109     122 .. 0.46

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 4e-27
      DUF423   1 lGAfgaHglkkkleekalesfetavqYqlyhalallavallaskaaasrllklagllflaGivlFSgslyllaltgkkvlgaitPiGG 88 
                 lGAfgaH l+++l ++++++++t+ +Yq +h+la++++a++ +++  s ++ ++ +++++G+vlFSgsly+lal++ ++++++tP+GG
  CTQ29622.1  20 LGAFGAHVLSQSLGAAEMAWIHTGLEYQAFHTLAIFGLAVA-MQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGG 106
                 7*********999999************************9.7789999**************************************9 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.9
      DUF423  56 llflaG 61 
                 +l+l+G
  CTQ29622.1 114 VLMLIG 119
                 234444 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   7.3      0.12   1.1e+03      33      79 ..      11      59 ..       3      66 .. 0.36
   2 !   17.4   7.8   3.8e-07    0.0034      38      94 ..      67     126 ..      63     131 .] 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.12
  Phage_holin_3_6 33 agsgagllgaagvlallalllllvalalala.a.lwlaalivaavllvl 79
                     a+sg ++++++++ a++   +l +a +++++      a+  +a++ l++
       CTQ29622.1 11 AISGFIFVALGAFGAHVLSQSLGAAEMAWIHtGlEYQAFHTLAIFGLAV 59
                     2333333333333333333333333333333213222222222222222 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 3.8e-07
  Phage_holin_3_6  38 gllgaagvlallalllllval.alala.alwlaali.vaavllvlagvlalvglkklkka 94 
                      +++    v+++l+ +l++  l  lal+ ++ +a++  v++v +++++vl+l+g  +lk++
       CTQ29622.1  67 IWFYWSSVFLALGTVLFSGSLyCLALShLRLWAFVTpVGGVSFLAGWVLMLIGAIRLKRK 126
                      6777778999999999999996699986788888888*********************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1107.97
//
Query:       CTQ29623.1  [L=305]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-41  140.0   1.2    6.9e-41  139.9   0.5    1.4  2  LysR_substrate  LysR substrate binding domain
    1.1e-21   76.5   1.7    2.4e-21   75.4   1.7    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
       0.12   12.2   0.5       0.25   11.2   0.5    1.5  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.44   2.6e+03      70     108 ..      21      54 ..      10      80 .. 0.47
   2 !  139.9   0.5   1.2e-44   6.9e-41       3     208 ..      91     292 ..      89     293 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.44
                     EEEEEEEEEEEEEEEETTSGGGGSSSE.CGGGGCTSEEEE CS
  LysR_substrate  70 learpLaeeplvlvaspdhpLargepv.sledLadeplil 108
                     l +++ a+e +v  a+ +h       + sled+ +++l  
      CTQ29623.1  21 LSFTRAADELFVTQAAVSHQ------IkSLEDFLGLKLFR 54 
                     55555555555555555552......22333333333332 PP

  == domain 2  score: 139.9 bits;  conditional E-value: 1.2e-44
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSE. CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepv. 96 
                     + +g L+++  p++a ++l+p+l +f  +yP++++++++ d  +++d+la+  +D+ai +g+ +++gl++++L+ e l++v+sp   L + + + 
      CTQ29623.1  91 SAKGALTVSLLPSFAIQWLVPRLTSFNSAYPGIDVRIQAVD--RQEDKLADD-VDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPLL-LTGDKALk 181
                     57899************************************..*********.********************************9.99977777 PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETT CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkg 190
                     +++dLa+++l++ +++ + +++  + l+ + ++++++  +++ +++l+++ +G G+al+ + +++ e+++grlv  p+ +  ++  ++ylv++ +
      CTQ29623.1 182 TPADLAQHTLLH-DASRRDWQTYTRQLGLSHINVQQGPIFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLV-CPFNDVLVSkNAFYLVCHDS 274
                     ************.777779999999999999999****************************************.******************** PP

                     CCCHHHHHHHHHHHHHHH CS
  LysR_substrate 191 relspavrafidflreal 208
                     +    +++af++++++++
      CTQ29623.1 275 QAELGKIAAFRQWILAKA 292
                     **************9875 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   1.7     4e-25   2.4e-21       1      60 []       8      67 ..       8      67 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 4e-25
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l++lr+f+a a++ sftrAA+eL ++q+avs+qik+LE+ lg +Lf R +r+l LTe+G+
  CTQ29623.1  8 LNALRVFDAAARHLSFTRAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQ 67
                789*********************************************99*********8 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   4.1e-05      0.25      12      53 ..      20      61 ..       9      63 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.1e-05
                TT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHHHHH CS
      HTH_30 12 ggnisatAkaLhvHrnTlryRLrrieellgldlddpddrlaL 53
                + + +++A++L+v    +++ ++ +e+ lgl l + ++r  L
  CTQ29623.1 20 HLSFTRAADELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLL 61
                57899***************************9988888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2338.72
//
Query:       CTQ29624.1  [L=76]
Description: hypothetical protein CH1034_280229 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-25   86.8   2.2    7.7e-25   86.5   2.2    1.1  1  DUF903    Bacterial protein of unknown function (DUF903)


Domain annotation for each model (and alignments):
>> DUF903  Bacterial protein of unknown function (DUF903)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   2.2   4.3e-29   7.7e-25       1      47 [.      25      71 ..      25      73 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 4.3e-29
                EEEEEETTS-EEEEES--EE-TTTSCEEEEBTTS-EEEEEGGGEEEE CS
      DUF903  1 pyvittkDGqtivtdgkPelDkdtGmyeYeDeeGkevqInkddVkqi 47
                +yv++t+DG+tivtdgkP++D+dtGm++Y+D+ G+++qIn++dVkq 
  CTQ29624.1 25 NYVMHTNDGRTIVTDGKPQTDNDTGMISYKDAWGNKQQINRSDVKQL 71
                7********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 626.59
//
Query:       CTQ29625.1  [L=401]
Description: cysteine sulfinate desulfinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.1e-135  450.5   0.0   4.6e-135  450.3   0.0    1.0  1  Aminotran_5      Aminotransferase class-V
    0.00098   17.8   0.0     0.0014   17.2   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
     0.0054   16.1   0.1      0.013   14.8   0.1    1.6  2  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
       0.13   12.4   0.4       0.57   10.3   0.0    2.1  2  ABM              Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  450.3   0.0    1e-138  4.6e-135       1     371 []      21     388 ..      21     388 .. 0.99

  Alignments for each domain:
  == domain 1  score: 450.3 bits;  conditional E-value: 1e-138
                  EEEBTTTS----HHHHHHHHHHHHCTCCSSSSSSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC.-TTTSEEEEETTS CS
  Aminotran_5   1 iyldsaAttqkpqeVldalqeyytdynanvhrsvhhlgkeatkaveearekvaelinaeseeeiiftsGtteainlvalslars.lkpgdeivvteae 97 
                  +yldsaAt+ kp +V+da +++y+ +++nvhrs+  +++++t+ +e+ar++va+++na+s ++i++t+Gtteain+va+s+ r  l+pgdei+v+eae
   CTQ29625.1  21 VYLDSAATALKPLAVIDASDQFYRLSAGNVHRSQFAAAQRLTERYEAARDRVAAWLNAPSGKDIVWTRGTTEAINMVAQSYVRPrLQPGDEIIVSEAE 118
                  7************************************************************************************************* PP

                  HGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEE CS
  Aminotran_5  98 hhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDfl 195
                  hhanlvpw ++a +tga+v+++pl ++ + d+  l +l++++ +++ai ++snvtG + ++++ ++la+++g++v+vD+aq+++h p dv++l++Df+
   CTQ29625.1 119 HHANLVPWLMVAGQTGARVVKLPLGADRLPDIASLSALITPRSRVLAIGQMSNVTGGCPDLAQAIRLAHAAGMVVMVDGAQGAVHFPADVQALDIDFY 216
                  ************************************************************************************************** PP

                  EEETTTTTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCT CS
  Aminotran_5 196 afsghKllgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlks 293
                  afsghKl+gPtGiG+ly+++ell ++ p+l+gg+m+ evs+++ t + ap+ +eaGTpnvag+igl+aale+l++ ++ ++e+ +++la+ ++e+l++
   CTQ29625.1 217 AFSGHKLYGPTGIGALYGKSELLAAMSPWLGGGKMIVEVSFDGFTPQPAPYGLEAGTPNVAGVIGLSAALEWLAQSDIGQAENWSRSLASLAEEELAK 314
                  ************************************************************************************************** PP

                  STTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTTHHHHHHTT.S-EEEEE--TTS-HHHHHHH CS
  Aminotran_5 294 lpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrsGhhcaqplmkrlalegtvRaSlyiynteeevdrl 371
                   pg+r +     ++++s+++f f+g+h++d++tlL+e+gIa+r+G+hcaqpl++ l+++gt+RaS++ ynt+++v +l
   CTQ29625.1 315 RPGFRSFR----CQQSSLLAFEFEGIHHSDLVTLLAESGIALRAGQHCAQPLLAALGVSGTLRASFAPYNTQDDVAAL 388
                  ******88....7**************************************************************886 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.1e-07    0.0014      88     178 ..     106     201 ..      87     223 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.1e-07
                      S-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST.....TSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTT CS
  Cys_Met_Meta_PP  88 lkaGdeivvsddlYggtqrllkkvlkklgievkfvdt.....sdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntf 176
                      l+ Gdei+vs+  +         v+ ++g +v           d+++l + i+++ +++ +  ++n +  ++D+++ ++la++ag++v+vD + 
       CTQ29625.1 106 LQPGDEIIVSEAEHHANLVPWLMVAGQTGARVVKLPLgadrlPDIASLSALITPRSRVLAIGQMSNVTGGCPDLAQAIRLAHAAGMVVMVDGAQ 199
                      6666776666666666665555666666666655544333336789999******************************************875 PP

                      TH CS
  Cys_Met_Meta_PP 177 as 178
                       +
       CTQ29625.1 200 GA 201
                      54 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1     3e-06     0.013      47     148 ..      90     200 ..      49     209 .. 0.81
   2 ?   -2.3   0.0      0.48   2.1e+03     248     305 ..     297     353 ..     284     362 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3e-06
                      HHHHHHHHHHH...TTTTTT-EEEEESSS-THHH....HHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEEE...EB-GGGB---HHHH CS
  DegT_DnrJ_EryC1  47 GtaAlhlaLra...lgvgpgdeVIvpsltFvata....navlelgakpvfvDvdpdtynidpaaieaaitertkaIl...pVhlyGqvadmdal 130
                       t+A+ ++ +      ++pgde+Iv  +   a       ++ ++ga++v +    ++  +d a++ a+it+r++      + ++ G + d+++ 
       CTQ29625.1  90 TTEAINMVAQSyvrPRLQPGDEIIVSEAEHHANLvpwlMVAGQTGARVVKLPLG-ADRLPDIASLSALITPRSRVLAigqMSNVTGGCPDLAQA 182
                      466766666666667889*********99999862222567799*****99887.6778**************7554112457789899***** PP

                      HHHHHHCT-EEEEE-TT- CS
  DegT_DnrJ_EryC1 131 kaiaakhglkvieDaAhA 148
                       ++a++ g++v+ D A++
       CTQ29625.1 183 IRLAHAAGMVVMVDGAQG 200
                      ****************96 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.48
                      HHHHHHHHHTCCCCEESCGGTTSSSEEESCEEEEEHCCHH.HCHHHHHHHHHHCCEE-B CS
  DegT_DnrJ_EryC1 248 aelykeeLaelegtaelttpketkkhawhlyavlveeeae.vkrdelvealkeegigtr 305
                      ae  ++ La+l +++ ++ p  ++     +   l+  e+e ++ ++lv+ l e gi+ r
       CTQ29625.1 297 AENWSRSLASLAEEELAKRPGFRS--FRCQQSSLLAFEFEgIHHSDLVTLLAESGIALR 353
                      566667777777654444444443..223333333334444899999999999988766 PP

>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       0.4   1.8e+03      51      73 ..      59      82 ..      49      85 .. 0.70
   2 ?   10.3   0.0   0.00013      0.57      13      45 ..     295     327 ..     291     333 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.4
                EEEEEEESSHHH.HHHHHTSHHHH CS
         ABM 51 vvvieeWeseaa.leahlksphfk 73
                  ++e++e + + + a+l++p+ k
  CTQ29625.1 59 QRLTERYEAARDrVAAWLNAPSGK 82
                567888888544499999998755 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00013
                 TGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEE CS
         ABM  13 gqaeafldafaeavesllaeepGclgyellrst 45 
                 gqae + + +a+++e++la+ pG+++++  +s+
  CTQ29625.1 295 GQAENWSRSLASLAEEELAKRPGFRSFRCQQSS 327
                 99*************************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3266.13
//
Query:       CTQ29626.1  [L=143]
Description: putative Fe-S metabolism protein (sufE-like) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-37  126.6   0.0    5.2e-37  126.4   0.0    1.0  1  SufE             Fe-S metabolism associated domain
  ------ inclusion threshold ------
      0.041   14.3   1.6        7.9    7.0   0.0    2.6  3  Nitr_red_alph_N  Respiratory nitrate reductase alpha N-termin


Domain annotation for each model (and alignments):
>> SufE  Fe-S metabolism associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.0   5.8e-41   5.2e-37       4     118 ..      20     135 ..      17     139 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 5.8e-41
                 HHHSSSHHHHHHHHHHHHHTS----CCCCCCCEEECTSSSEEEEEEEEETTS.EEEEEEESSHHHHHHHHHHHHHCTTEECCCCTCC-TCHHHHHTTSH CS
        SufE   4 fsllddweeryrylielgkklpplpeelkteenkvkGCqsqvwlaaeledgk.lkfeadsdarivkGllalllevlsgktpeeilavdledfleelgls 101
                 f+ l++we++yr+li lgkklp+l++e k++++++ GC+++vwl +e ++++ l+f +ds+ riv+Glla+ll++++gkt++ ila d+ ++++elgl+
  CTQ29626.1  20 FAPLNQWEDKYRQLILLGKKLPTLTDERKAQAHEIAGCENRVWLGYEEDAEGrLHFFGDSEGRIVRGLLAVLLTAVEGKTRAGILAQDPLALFDELGLR 118
                 8899*******************************************998667********************************************** PP

                 HHHCHHHHHHHHHHHHH CS
        SufE 102 ehlspsRsnGlaamlkr 118
                  +ls sRs+Gl+a+ + 
  CTQ29626.1 119 GQLSASRSQGLSALSEA 135
                 ************99876 PP

>> Nitr_red_alph_N  Respiratory nitrate reductase alpha N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.6    0.0029        26      29      36 ..      25      32 ..      24      32 .. 0.91
   2 ?    7.0   0.0   0.00088       7.9      13      30 ..      45      62 ..      38      65 .. 0.90
   3 ?   -2.5   0.0      0.83   7.4e+03       5      11 ..      72      78 ..      71      82 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0029
  Nitr_red_alph_N 29 eWEdaYRr 36
                     +WEd YR+
       CTQ29626.1 25 QWEDKYRQ 32
                     6******8 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00088
  Nitr_red_alph_N 13 kekfadgHgetteedReW 30
                      e+ a+ H++  +e+R W
       CTQ29626.1 45 DERKAQAHEIAGCENRVW 62
                     4899************** PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.83
  Nitr_red_alph_N  5 rlrffrk 11
                     rl ff  
       CTQ29626.1 72 RLHFFGD 78
                     8999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1221.99
//
Query:       CTQ29627.1  [L=273]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-36  125.2   1.2    4.4e-36  124.5   1.2    1.3  1  ThiF             ThiF family
    0.00065   19.4   0.8     0.0013   18.4   0.6    1.6  2  DAO              FAD dependent oxidoreductase
     0.0013   19.0   0.4     0.0049   17.1   0.4    2.0  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0027   17.3   1.2     0.0063   16.1   1.0    1.7  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
     0.0027   17.6   0.1     0.0044   16.9   0.1    1.3  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
     0.0041   17.6   0.4      0.019   15.4   0.4    2.1  1  NAD_binding_7    Putative NAD(P)-binding
  ------ inclusion threshold ------
      0.033   13.9   0.1      0.068   12.9   0.1    1.5  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
      0.085   12.1   0.3       0.12   11.6   0.3    1.3  1  FAD_binding_3    FAD binding domain
      0.095   12.8   0.0        0.2   11.7   0.0    1.5  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   1.2   2.2e-39   4.4e-36       8     208 ..      20     260 ..      10     271 .. 0.80

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 2.2e-39
                 HHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCGCCS-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   8 lgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritdetvleel 106
                  ge+ ++  +d++v++vG+Gg+Gs+++++La++G+g +tl+D+D + ++N+nRq+ + + ++G +Kaev+ae+++ inp++ v+ v + +t+e+v+e l
  CTQ29627.1  20 YGEKALQCFADAHVCVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALSGNVGLAKAEVMAERIRLINPECRVTVVDDFVTPENVAEYL 118
                 5668889999************************************************************************************999** PP

                 HTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEE...............................................ECCS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................................xxxxx RF
        ThiF 107 lesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvvii...............................................pgktg 158
                   ++ +V+da+D++  + ++   c+++++pl+++g +g + + + i                                                p + +
  CTQ29627.1 119 GVGFSYVIDAIDSVRPKAALIAWCRRYKVPLVTTGGAGGQIDPTQIQvadlaktiqdplaaklrerlksqfgvvknskgklgvdcvfstealvyP-QAD 216
                 *********************************99999998888884466778888888888888887777777776665555555555444422.333 PP

                 ECTSS-TGGS.EECCCCEEHHHHHHCTE-B-HHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 159 cyeCldpsstedptekkvplctsiagnipaiatttavvaglaalellkll 208
                    C + +st+  ++   + c s  g   a   +ta ++ +a+ ++lk +
  CTQ29627.1 217 GSVCAM-KSTAEGPK--RMDCASGFG---AATMVTATFGFVAVSHALKKM 260
                 333333.23333333..344423445...666778888888888888877 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.6   6.7e-07    0.0013       1      39 [.      32      72 ..      32     110 .. 0.80
   2 ?   -1.7   0.0      0.86   1.7e+03      75      75 ..     199     199 ..     141     268 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.7e-07
                EEEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTSSGGGS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg...VtllekgdiagsgaSgr 39
                +v+++G G +G+++A +Lar g   +tl++++ +++   + r
  CTQ29627.1 32 HVCVVGIGGVGSWAAEALARTGigaITLIDMD-DVCVTNTNR 72
                79*****************99888********.555355544 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.86
                 H CS
         DAO  75 l 75 
                 l
  CTQ29627.1 199 L 199
                 1 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.4   2.4e-06    0.0049       1     100 [.      33     153 ..      33     188 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.4e-06
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH.....................TTTCEEEEE--TTTHHHHHHHHHTTS.SE CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka.....................lgvrfeaialdaenyeavLaallkeg.dl 72 
                      v ++G G+vG+ +ae lar++     it++d ++  + ++  ++                      ++++  + +d    ++ +a++l  g   
       CTQ29627.1  33 VCVVGIGGVGSWAAEALARTGIG--AITLIDMDDVCVTNTNRQIhalsgnvglakaevmaerirlINPECRVTVVDDFVTPENVAEYLGVGfSY 124
                      679*****************955..9**********99999999999*************88877666666666666666666777888779** PP

                      EEE-SSGG.GHHHHHHHHHHHT-EEEESS CS
  Sacchrp_dh_NADP  73 vvnlsppi.ssldvlkaCietgvhyvdts 100
                      v++++ ++   ++++++C++ +v  v+t 
       CTQ29627.1 125 VIDAIDSVrPKAALIAWCRRYKVPLVTTG 153
                      ********77889***********99964 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   1.0   3.1e-06    0.0063       2      43 ..      32      74 ..      31      95 .. 0.87
   2 ?   -1.9   0.0         1   2.1e+03       9      23 ..      79      93 ..      78     116 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.1e-06
                    EEEEE--STTHHHHHHHHHHCT.SEEEEE-S-HHHHHHHCTTS CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeig.hevigvDideekvdklnsgk 43
                    +++v+G G vG   a +la+ g   ++++D+d+  v + n++ 
      CTQ29627.1 32 HVCVVGIGGVGSWAAEALARTGiGAITLIDMDDVCVTNTNRQI 74
                    69********************66899*********9999875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1
                    STTHHHHHHHHHHCT CS
  UDPG_MGDP_dh_N  9 GYvGlvtaavlaeig 23
                    G vGl  a v+ae+ 
      CTQ29627.1 79 GNVGLAKAEVMAERI 93
                    789999999999875 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   2.2e-06    0.0044       1     110 [.      32     139 ..      32     141 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.2e-06
                 EEEEE--SCCHHHHHHHHHHTT-.EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHH.HHHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagl.eVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelK.rkvf 97 
                 +v v+G G +G+  a+++a++g+  ++l+d+++  +++ +++i++ l+     g +k+e +++++  i+++  +  + d  +  E+v+E l +    v+
  CTQ29627.1  32 HVCVVGIGGVGSWAAEALARTGIgAITLIDMDDVCVTNTNRQIHA-LSGN--VGLAKAEVMAERIRLINPECRVTVV-DDFVTPENVAEYLGVGfSYVI 126
                 599*******************9569******************8.4433..3666666777777777776666544.555566999998887624566 PP

                 HHHHCCS-TTSEE CS
     3HCDH_N  98 aelekiakpdail 110
                  +++++ ++ a++
  CTQ29627.1 127 DAIDSVRPKAALI 139
                 6777777666666 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   9.3e-06     0.019       5      89 ..      28     149 ..      25     155 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.3e-06
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleag.akvtvvapev......keele..................elvklaeee......lekd........... 58 
                    + + +v+vvG G v+   ++ l+++g   +t+++ +       +                      e+++l++ e         d           
     CTQ29627.1  28 FADAHVCVVGIGGVGSWAAEALARTGiGAITLIDMDDvcvtntN---RqihalsgnvglakaevmaERIRLINPEcrvtvvD--Dfvtpenvaeyl 118
                    5689**********************778***999865554331...04556665555555555554444333223333330..133333333332 PP

  NAD_binding_7  59 legadlviaatddrelneriaeaakarrilv 89 
                      g+  vi a+d    ++++ ++++++++++
     CTQ29627.1 119 GVGFSYVIDAIDSVRPKAALIAWCRRYKVPL 149
                    33588*******9999999999999999876 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   3.4e-05     0.068      24      79 ..      22      77 ..      15      96 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.4e-05
                   HTTTS-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE-HHHH CS
  ELFV_dehydrog 24 klkldslegkrvaisGsGnvgsyaallltelgakvvavsDssGviydpeGldieel 79
                   + +l+ +++++v + G G vgs+aa+ l++ g   ++++D + v + ++  +i++l
     CTQ29627.1 22 EKALQCFADAHVCVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHAL 77
                   446677999*******************************9998887777666665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3     6e-05      0.12       2      31 ..      31      61 ..      30      92 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6e-05
                   EEEEEE--SHHHHHHHHHHHHTTHH.EEEEE CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvr.vvlve 31
                   + V++VG G +G  +a  L++ G+   +l++
     CTQ29627.1 31 AHVCVVGIGGVGSWAAEALARTGIGaITLID 61
                   68**********************9544555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.8e-05       0.2       4      42 ..      22      60 ..      20      77 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.8e-05
                  HHHHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEE CS
  Shikimate_DH  4 kkkleslkekkvlliGaGemaelvakhLlakgvkkvvva 42
                  +k l+ +++++v+++G G +++ +a++L++ g+ +++ +
    CTQ29627.1 22 EKALQCFADAHVCVVGIGGVGSWAAEALARTGIGAITLI 60
                  57788999************************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2229.09
//
Query:       CTQ29628.1  [L=365]
Description: membrane-bound lytic murein transglycosylase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-42  146.4   1.2    1.2e-40  139.7   1.2    2.2  1  MltA      MltA specific insert domain
    2.6e-25   88.4   0.0    5.4e-25   87.4   0.0    1.5  1  3D        3D domain
  ------ inclusion threshold ------
       0.14   12.3   0.2        2.6    8.3   0.0    2.1  2  Death     Death domain


Domain annotation for each model (and alignments):
>> MltA  MltA specific insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   1.2     2e-44   1.2e-40      36     225 .]      90     257 ..      54     257 .. 0.80

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 2e-44
                 ..SHHHHHHHHHHCCEEEEECCCG.EEEEEEEEE-EEEEESS--SSS-EEEEB--TTEEEEETTTGGTTTEEEEEEETTEEEE---HHHHCTSTTTTTS CS
        MltA  36 asksaeaaraffeeeftpyrvegk.eglvTGYYepllegsrtrtaeyrvPlyrrPadlvtvdlfpelkgkrlrgrlegrklvpyptRaeieaegalkgk 133
                 a  +++++r+f  +  ++  v +  +  +TGYY p++++++tr++e+++P+yr+P+                          + p+Ra+i a gal+++
  CTQ29628.1  90 AGGDTRTLRQFGIDAWQMQGVDNYgNVQFTGYYTPVVQARHTRQGEFQYPIYRMPPKR-----------------------GKLPSRASIYA-GALSDN 164
                 4444456666655555555554445559***************************974.......................34689******.888876 PP

                 S.ECEEES.HHHHHHHHHHTEEEEE-TTS-EEE.EEEEEE-S-----CHHHHHCTT-S-TTT--HHHHHHHHHCTCH.HHHHHHTT----EEEE CS
        MltA 134 klelawlkdpvdafflqvQGSgrlrlpdgsvlr.vgYagknghpYtsiGrlLiergelkkeeasmqairawlranpe.eldellnenpsyvFFr 225
                    la+ ++ +d f++ vQGSg + + dgs l+  +Yagkng+pY+siG++Li+rge+kke++smqair+w +++ e e++ell++nps+vFF+
  CTQ29628.1 165 Y-VLAYSNSLMDNFIMDVQGSGYIDFGDGSPLNfFSYAGKNGWPYRSIGKVLIDRGEVKKEDMSMQAIREWGEKHSEaEVRELLEQNPSFVFFK 257
                 6.8***************************997369************************************99875389*************7 PP

>> 3D  3D domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.0     9e-29   5.4e-25       2      75 .]     277     354 ..     276     354 .. 0.93

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 9e-29
                 EEEE-TTTS-TT-EEEEEECCEET..TT...CCEEEEEEEEE--TT--SSEEEEEEEESHHHHHHHHTSEEEEEEEEEE CS
          3D   2 siAvDpsviplGtpvlvegeplla..gk...kpvyrlviaqDtGgaIkGnriDlffgtgdeagelaGlvkkegkvyiLl 75 
                 s+A D+s+ip+Gt++l e+ pll+  gk   +++ rl++a+D+GgaIkG+++D++ g+g +ag++aG+++++g+v++L+
  CTQ29628.1 277 SVASDRSIIPPGTTLLAEV-PLLDnnGKfngQYELRLMVALDVGGAIKGQHFDIYQGIGPDAGHRAGWYNHYGRVWVLK 354
                 9******************.8888553378899********************************************96 PP

>> Death  Death domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00044       2.6      28      64 ..      60      98 ..      56     100 .. 0.85
   2 ?    1.7   0.0     0.048   2.9e+02      43      68 ..     224     248 ..     213     249 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00044
                HHHHHHHHHHSS...STHHHHHHHHHHHHHHHHTTTCSHH CS
       Death 28 seeeidrieken...nslrsqsyalLqlWedregenatvg 64
                se+ +++i++ +    +++s +y+ Lq+W    g+  t+ 
  CTQ29628.1 60 SEQ-VNQIRNASprlYNSQSNVYNALQEWLRAGGDTRTLR 98
                444.999999999999**************9988888875 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.048
                 HHHHHHHHHHHHHHHTTTCSHHHHHH CS
       Death  43 rsqsyalLqlWedregenatvgtLle 68 
                  + s +  ++W +++ ++a v +Lle
  CTQ29628.1 224 EDMSMQAIREWGEKH-SEAEVRELLE 248
                 67789999*****98.9999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2731.15
//
Query:       CTQ29629.1  [L=351]
Description: nicotinate-nucleotide dimethylbenzimidazole-P phophoribosyl transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.9e-118  394.1  12.7   5.5e-118  394.0  12.7    1.0  1  DBI_PRT   Phosphoribosyltransferase
  ------ inclusion threshold ------
       0.03   14.7   0.0      0.057   13.8   0.0    1.3  1  NblA      Phycobilisome degradation protein nblA


Domain annotation for each model (and alignments):
>> DBI_PRT  Phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.0  12.7  6.1e-122  5.5e-118       1     326 [.      11     343 ..      11     346 .. 0.96

  Alignments for each domain:
  == domain 1  score: 394.0 bits;  conditional E-value: 6.1e-122
                 ....XHHHHHHHHHHHCTBSSSTTTTHHHHHHHHHHHCHHCGT.TS---EEEEEEEEE-BGGGGGT--SS-TTHHHHHHHHHHCT-SHHHHHHHHCTEE CS
     DBI_PRT   1 iepldeeameaararldsltkPlgsLGrLeelavqlagiqgtl.kpelekkavlvfagDhGvaaegvsaypqevTaqmvenflaggaavnvlarqagae 98 
                 i+++d++am++a++++d l kP+gsLGrLe lavqlag+ g   +p++ kka+lv+++DhGv +egv ++p++vTa +++n+++g+++v+vla+qaga+
  CTQ29629.1  11 IPAPDADAMARAQQHIDGLLKPPGSLGRLEALAVQLAGMPGLGgQPQVAKKALLVMCADHGVWDEGVAISPKAVTAIQAANMTRGTTGVCVLAAQAGAK 109
                 789************************************9975267***************************************************** PP

                 EEEEEEE-S..--T..EE--SSSSB--TTTS-SS-HHHHHHHHHHHHHHHHHHHCTTECEEEEEEE-TTCHHHHHHHHHHHHT--HHHH---TTT--HH CS
     DBI_PRT  99 lrvvDvgva..dle..vdrkvrrgtaniakepAmtreeaeaaleaGieladeladagadllalGemGigNttaaaallaallglepeevvGrGtgldde 193
                 ++v+Dvg++  +l+  v+ +v+rg++nia++pAm+re+ ++ l   +++ ++la++g++l+++Ge+G++Ntt+aaa++++l+g++++evvG G++l  +
  CTQ29629.1 110 VHVIDVGIDsePLPgvVNMRVARGCGNIARGPAMSREQGQELLLEVMRYTRALAQEGVTLFGVGELGMANTTPAAAIVSVLTGSDAQEVVGIGANLPLA 208
                 *******887766697777******************************************************************************** PP

                 HHHHHHHHHHHHHHCH..-TT.HHHHHHHHS-HHHHHHHHHHHHHHHTT--EEE-SHHHHHHHHHHHHHSGGGGGGEEE-B--SSTCHHHHHHHHT--- CS
     DBI_PRT 194 glarKiavieqalarh..aekdplevLakvGGleiaalaGailgAaarripvvlDGfistaAalvAvrlapevkdyliashrsaepghkllleaLglep 290
                 ++ +K++v+++a+a++  +++d l+vL+kvGG+++ +++G++lgAa+ ++pvvlDGf+s aAal+A+++apevk yli+sh sae+g++++l++Lglep
  CTQ29629.1 209 KVGNKVEVVRRAIAVNqpDPNDGLDVLSKVGGFDLLGMTGVMLGAASCGLPVVLDGFLSYAAALAACQIAPEVKPYLIPSHYSAEKGARIALAHLGLEP 307
                 ****************543679***************************************************************************** PP

                 SB-S---S-TTHHHHHHHHHHHHHHHHCCHS-BHHH CS
     DBI_PRT 291 lldlglrlGEGtGAalalplleaAaallnematfee 326
                 +l++g+rlGEG+GAala+p++eaA+a+++ m   + 
  CTQ29629.1 308 YLNMGMRLGEGSGAALAMPIVEAACAMYHRMGMLAA 343
                 *******************************88765 PP

>> NblA  Phycobilisome degradation protein nblA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.4e-06     0.057      19      34 ..     142     157 ..     140     161 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.4e-06
                 CS-CHHHHHHHHHHHH CS
        NblA  19 qmSrEqaqelLlelyr 34 
                  mSrEq qelLle++r
  CTQ29629.1 142 AMSREQGQELLLEVMR 157
                 6*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2709.01
//
Query:       CTQ29630.1  [L=181]
Description: bifunctional cobinamide kinase and cobinamide phosphate guanylyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-62  208.0   0.0    7.5e-62  207.9   0.0    1.0  1  CobU            Cobinamide kinase / cobinamide phosphate guan
  ------ inclusion threshold ------
       0.28   11.5   1.5         16    5.9   0.0    2.5  2  preATP-grasp_3  pre ATP-grasp 3 domain


Domain annotation for each model (and alignments):
>> CobU  Cobinamide kinase / cobinamide phosphate guanyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.9   0.0   8.3e-66   7.5e-62       1     169 []       3     180 ..       3     180 .. 0.97

  Alignments for each domain:
  == domain 1  score: 207.9 bits;  conditional E-value: 8.3e-66
        CobU   1 ilvtGgarSGKSefAeklaeeskekvvYiATaealDeemaeRiarHrerRpaeWetveepldlaealkeeek.kevvLvDcltlwltnllleeeaek.. 96 
                 +lvtGgarSGKS++Ae+l+++ + +v+YiAT++ +D+ema+Ri++Hr+ Rpa+W+t e+ ++l+e+++ + + +e++L++c+t+++tnll++   ++  
  CTQ29630.1   3 TLVTGGARSGKSRHAEALIAD-APQVLYIATSQIFDDEMAARIQHHRDGRPAHWRTAERWQQLDELITPAIApEEAILLECITTMVTNLLFALGGDSdp 100
                 79****************996.699******************************************9987789******************9988899 PP

        CobU  97 .......veekleeeveellealkelkatvvlVsnEvglgvvpenalgrlfrdllGrlnqrlaaeadevvlvvaGlplkl 169
                        +e+++++e+  l++a+++++a+vvlV+nEvg+g+vpen+l+r+frd++Gr+nqrlaa+ad v+lvv+G+ +k+
  CTQ29630.1 101 dgwdyaaMEQAIDDEIGVLIAACQRCPAHVVLVTNEVGMGIVPENRLARHFRDIAGRVNQRLAAAADAVWLVVSGIGVKI 180
                 ******99********************************************************************9986 PP

>> preATP-grasp_3  pre ATP-grasp 3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.4    0.0049        44      46      64 ..      71      89 ..      23      98 .. 0.72
   2 ?    5.9   0.0    0.0017        16      35      47 ..     160     172 ..     137     173 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0049
  preATP-grasp_3 46 vIAPEtdgiLarltrlvea 64
                     IAPE   +L+ +t +v  
      CTQ29630.1 71 AIAPEEAILLECITTMVTN 89
                    5**********99999965 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0017
  preATP-grasp_3  35 rrlaaeaDaVlvI 47 
                     +rlaa+aDaV+++
      CTQ29630.1 160 QRLAAAADAVWLV 172
                     789********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1417.72
//
Query:       CTQ29631.1  [L=507]
Description: Cobyric acid synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-57  193.6   0.0    3.6e-57  193.1   0.0    1.2  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
    7.3e-22   78.2   0.0    2.4e-21   76.5   0.0    1.8  2  AAA_26         AAA domain
    2.9e-21   75.8   0.0    5.2e-21   75.0   0.0    1.4  1  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain
    3.8e-06   26.8   0.0    7.2e-06   25.9   0.0    1.4  1  GATase         Glutamine amidotransferase class-I
     0.0055   16.5   0.0      0.011   15.5   0.0    1.6  1  Peptidase_C26  Peptidase C26
  ------ inclusion threshold ------
      0.011   15.6   0.0       0.02   14.7   0.0    1.3  1  SNO            SNO glutamine amidotransferase family


Domain annotation for each model (and alignments):
>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.1   0.0   1.2e-60   3.6e-57       1     195 [.     253     447 ..     253     448 .. 0.94

  Alignments for each domain:
  == domain 1  score: 193.1 bits;  conditional E-value: 1.2e-60
    GATase_3   1 kiavirlpaisnytdldpLeaepevrvrfvplkdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpegve 99 
                 +iav++lp+i+n+td+++L+a+p+vrvr+v+   ++l +dadlvilpG+k+t+ dl +lresg++ a+++a ++++p+lgiCGG+qmLGe+i+d+  ve
  CTQ29631.1 253 DIAVVHLPHIANFTDFNALAAQPDVRVRYVR-DPQAL-ADADLVILPGSKNTLGDLCWLRESGMAHAVEQARQRKVPLLGICGGYQMLGETIIDE--VE 347
                 69*****************************.*****.56*****************************************************96..69 PP

    GATase_3 100 geageveglglLdietefekekltgqvegevel.......aaegeevkGyEiHsGrtilkekakpllkvkvggnng.ekdGavkksedgnvlGtYlHgl 190
                 +  g  +glg+L++ t+f+++k+t+qv++++          a+g +v+GyEiH+G+t +++++ pll++++    +  +dGa+  s dg  +GtYlHgl
  CTQ29631.1 348 SGLGAQPGLGVLKTVTHFAQHKTTTQVQATLGSalpdwlaDAAGLRVSGYEIHMGETRREAGCPPLLQLHK--AGQaVDDGAI--SDDGLAFGTYLHGL 442
                 9*****************************76699***987889*************************54..22249*****..77************ PP

    GATase_3 191 fdnrn 195
                 fd+++
  CTQ29631.1 443 FDSDA 447
                 **987 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   8.2e-25   2.4e-21       3     191 ..       5     227 ..       4     233 .. 0.78
   2 ?   -3.4   0.0       2.4     7e+03     147     162 ..     316     331 ..     313     331 .. 0.83

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 8.2e-25
      AAA_26   3 ifvtgtdtgvGKTvvslgLvralkrkgvkvgyfKPiqtgie........ededseli.kellgldqtyelpeplalsaplspelaarqegedid.leki 91 
                 +++ gt  +vGK+v+ +gL+r++++ g +++ fK  +  ++        e ++++   +e++g+  +   ++p++l+    ++++  ++g+  + ++ +
  CTQ29631.1   5 VMLQGTASDVGKSVLVAGLCRIFHQDGLRTAPFKSQNMALNsgitpdgkEMGRAQIFqAEAAGIAPDVR-MNPILLKPTSDRQAQVVLMGQVATsMDAV 102
                 899*******************************96555554444433322233333133444444444.77777765544444444444444434544 PP

      AAA_26  92 v................kelekdadivvVEGagglgvpitee..llnadiaknlgapvilVarggl.gtinqllltiealr.qknvrvlGvilNkvrnp 170
                                  ++l+ +++ +v EGag+  +  +++   +n  +a++ ++pvilVa +++ g +++++ t+++l+ q+  rv+Gvi+Nk+r +
  CTQ29631.1 103 SyhqykprlreqilavyQSLAGEYEALVLEGAGSPAEINLRDrdIVNMGMAEMAQCPVILVADIDRgGVFAAIYGTLALLQpQERARVKGVIINKFRGD 201
                 488999**********889999**************9877766689******************994589**********967899************* PP

      AAA_26 171 .....envetlekksgipvlGvvPyl 191
                        +e++e+ +g+pvlGv+P+l
  CTQ29631.1 202 vallrSGIEQIEALTGVPVLGVMPWL 227
                 766655*******************7 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.4
      AAA_26 147 ltiealrqknvrvlGv 162
                  ++e +rq++v++lG+
  CTQ29631.1 316 HAVEQARQRKVPLLGI 331
                 5789999999999997 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   1.7e-24   5.2e-21       1     116 [.       5     228 ..       5     235 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 1.7e-24
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH.HTTEB-HHHH............................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx............................................ RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlai.leglendiep............................................ 54 
                 +++++t ++vGK++l+a+L+r++ ++glr+++++ +++a n+ i  +g+e+ +++                                            
  CTQ29631.1   5 VMLQGTASDVGKSVLVAGLCRIFHQDGLRTAPFKSQNMALNSGItPDGKEMGRAQifqaeaagiapdvrmnpillkptsdrqaqvvlmgqvatsmdavs 103
                 5789***************************************999999999999******************************************** PP

                 .............................................................CCHCCCHHHHHHCHCHHHH.......EEEEEEEEESS. CS
                 .............................................................xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx RF
        CbiA  55 .............................................................dlkrllellealgkkkall.....lkiagvvlnrvdge 87 
                                                                              d++r +++++a+++++all      +++gv++n+++g+
  CTQ29631.1 104 yhqykprlreqilavyqslageyealvlegagspaeinlrdrdivnmgmaemaqcpvilvaDIDR-GGVFAAIYGTLALLqpqerARVKGVIINKFRGD 201
                 *****************************************************************.************99******************* PP

                 ..-TTCHHHHHHHHHHCTS-EEEEEE--C CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  88 neetllkealeelkqrygvpvlgviprde 116
                    +ll++++e++++ +gvpvlgv+p+ +
  CTQ29631.1 202 --VALLRSGIEQIEALTGVPVLGVMPWLD 228
                 ..***********9999*********965 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   2.4e-09   7.2e-06      39      94 ..     287     358 ..     255     399 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 2.4e-09
                 THHSTSEEEEEEESSCTT......TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEE..........E CS
      GATase  39 llknpdgilvsgGpgspg......vegkieaikearenkiPiLGICLGmQllaiefgrkvv..........k 94 
                 +l ++d ++++g  ++ g        g+  a+++ar++k+P+LGIC G Q+l++ +  +v+           
  CTQ29631.1 287 ALADADLVILPGSKNTLGdlcwlrESGMAHAVEQARQRKVPLLGICGGYQMLGETIIDEVEsglgaqpglgV 358
                 36789999999999999999999889***************************9998888765544444441 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.7e-06     0.011      90     132 ..     310     348 ..     286     397 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.7e-06
  Peptidase_C26  90 RdalelaLiraalergvPilgiCrGlqllnvalGGtlyqdiee 132
                    R++     +++a +r+vP+lgiC G+q+l    G t+  ++e+
     CTQ29631.1 310 RESGMAHAVEQARQRKVPLLGICGGYQML----GETIIDEVES 348
                    555566678999****************9....6666666665 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.7e-06      0.02      23      88 ..     280     345 ..     257     367 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.7e-06
                 EEE-SGGGGCC-SEEEE-SS-HHHHHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHHHCCEETTB CS
         SNO  23 ktvkrkedlaevdaliiPGGestamskliertglyedllefvknsekvvlGtCaGlillskelene 88 
                 + v++++ la+ d +i+PG   t   +   r   + +  e +++ + ++lG C G  +l + +  e
  CTQ29631.1 280 RYVRDPQALADADLVILPGSKNTLGDLCWLRESGMAHAVEQARQRKVPLLGICGGYQMLGETIIDE 345
                 7899******************9988888888889999******************9999888666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3996.18
//
Query:       CTQ29632.1  [L=274]
Description: Cobalt import ATP-binding protein CbiO [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-29  103.3   0.0    2.2e-29  102.7   0.0    1.3  1  ABC_tran    ABC transporter
      4e-12   46.6   0.1      1e-05   25.5   0.0    2.1  2  AAA_21      AAA domain, putative AbiEii toxin, Type IV TA sys
    1.9e-06   27.9   0.0     0.0082   15.9   0.0    2.1  2  AAA_15      AAA ATPase domain
    6.7e-06   25.7   0.0    1.2e-05   24.9   0.0    1.3  1  SMC_N       RecF/RecN/SMC N terminal domain
    0.00042   20.9   0.0    0.00069   20.2   0.0    1.3  1  AAA_23      AAA domain
    0.00065   19.4   0.0     0.0015   18.2   0.0    1.6  1  AAA_29      P-loop containing region of AAA domain
     0.0092   15.6   0.1      0.022   14.3   0.1    1.7  1  AAA_25      AAA domain
  ------ inclusion threshold ------
       0.02   13.9   0.1       0.16   10.9   0.1    2.1  1  MeaB        Methylmalonyl Co-A mutase-associated GTPase MeaB
      0.027   14.4   0.1       0.16   12.0   0.1    2.1  2  AAA_5       AAA domain (dynein-related subfamily)
      0.036   14.5   0.1      0.082   13.3   0.1    1.6  1  AAA_16      AAA ATPase domain
      0.073   13.2   0.0       0.21   11.7   0.0    1.9  1  MMR_HSR1    50S ribosome-binding GTPase
       0.09   12.5   0.1         20    4.8   0.1    2.8  3  His_Phos_1  Histidine phosphatase superfamily (branch 1)
       0.14   12.0   0.0       0.25   11.1   0.0    1.3  1  MukB        MukB N-terminal
       0.16   12.2   0.0       0.32   11.2   0.0    1.5  1  AAA_28      AAA domain
       0.17   12.1   0.1       0.27   11.4   0.1    1.6  1  AAA_33      AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0   1.8e-32   2.2e-29       1     137 []      17     165 ..      17     165 .. 0.94

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 1.8e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSB.HHHH.............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx.xxxx.............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpelt.vren.............esde 83 
                 lk ++l++++  ++++vG nG+GKStL++ l+gll+p++G +l++g+ l++  + l  lr+++++++q+p  +  +t + +              e  +
  CTQ29632.1  17 LKGLTLDFSRHAVTGLVGANGCGKSTLFMNLSGLLRPQQGAVLWQGEALNYskRGLLALRQQVATVFQDPDQQIFYTdIDSDiafslrnlgvaeeEIAR 115
                 7899***********************************************8888899***********77777777577779********99999999 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++++al+ ++ ++++++++    + LS+Gqk+rva+a al+ +++ lllDEpta
  CTQ29632.1 116 RVDEALTLVDAQGFRQQPI----QCLSHGQKKRVAIAGALVLQARYLLLDEPTA 165
                 9******************....*****************************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2     1e-06    0.0012       1      24 [.      29      52 ..      29      77 .. 0.82
   2 !   25.5   0.0   8.4e-09     1e-05     194     301 ..      98     198 ..      91     199 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1e-06
      AAA_21  1 lnvliGpNgsGKSnLLdaldllar 24
                +++l+G+Ng+GKS+L+  l++l r
  CTQ29632.1 29 VTGLVGANGCGKSTLFMNLSGLLR 52
                699**************9999965 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 8.4e-09
      AAA_21 194 lveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP....kllrrllellkelsrn 288
                 ++ + l++lg++ee+ia++ +      +++++  + ++ p+  lS G+k+  a++ al  ++   + ll+DEp +gL+P    +     + ++++    
  CTQ29632.1  98 DIAFSLRNLGVAEEEIARRVDE----ALTLVDAQGFRQQPIQCLSHGQKKRVAIAGALVLQA---RYLLLDEPTAGLDPrgraQ----MIAIIRRIVGQ 185
                 5556666666666666666666....8889999999999999********************...88************55533....44444444445 PP

      AAA_21 289 gaQviltTHSpll 301
                 g  v++++H+  l
  CTQ29632.1 186 GRRVVISSHDIDL 198
                 667******9766 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.9e-06    0.0082      15      50 ..      18      54 ..      16     106 .. 0.75
   2 !   10.7   0.0   0.00026      0.31     290     365 ..     130     195 ..      69     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.9e-06
      AAA_15 15 kdveidlsee.ltvliGkNnsGKSsilealdlFlnnk 50
                k  ++d+s   +t l+G+N++GKS++ + l  +l  +
  CTQ29632.1 18 KGLTLDFSRHaVTGLVGANGCGKSTLFMNLSGLLRPQ 54
                56789999999***************99888777755 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00026
      AAA_15 290 eelplnknGsGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHS 365
                  ++p+   ++G++  + ++  ++   +          ll++EP a L p    ++i  +++++ +++  v+i++H 
  CTQ29632.1 130 RQQPIQCLSHGQKKRVAIAGALVLQARY---------LLLDEPTAGLDPRGRAQMIAIIRRIVGQGR-RVVISSHD 195
                 56789999********************.........*****************************9.*******7 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   9.8e-09   1.2e-05      24     205 ..      27     202 ..      17     214 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 9.8e-09
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkke 122
                 + +t +vG+NG+GKs l+  ++ +L  ++   l + +  +l + sk++  + + +v+ +f+++d+++  ++ +  i  ++ + g  e +i ++  +   
  CTQ29632.1  27 HAVTGLVGANGCGKSTLFMNLSGLLRPQQGAVLWQGE--ALNY-SKRGLLALRQQVATVFQDPDQQIFYTDIDSDIAFSLRNLGVAEEEIARRVDEALT 122
                 45899****************9999988886666544..4444.59999999**************888888889998888888888888776655544 PP

                 HHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemleka 205
                 + +     +  ++ LS G+k+ va+a  + +q+       llDe  a LD + ++++  ++++   +   +++ s++ +++ ++
  CTQ29632.1 123 LVDAQGFRQQPIQCLSHGQKKRVAIAGALVLQAR----YLLLDEPTAGLDPRGRAQMIAIIRRIVGQgRRVVISSHDIDLIYEV 202
                 44433333333458**********9988777654....689********************98776635566666666655554 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.8e-07   0.00069      11      37 ..      18      45 ..      12      51 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.8e-07
      AAA_23 11 rdqeidF.skgltlItGpNGaGKTTild 37
                ++ ++dF  + +t ++G NG+GK+T++ 
  CTQ29632.1 18 KGLTLDFsRHAVTGLVGANGCGKSTLFM 45
                6789***6569***************95 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.3e-06    0.0015      14      50 ..      19      55 ..      13      59 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-06
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTllDAiqalLvpak 50
                g t++++++ +t l+G++G GKSTl+  ++ lL p++
  CTQ29632.1 19 GLTLDFSRHAVTGLVGANGCGKSTLFMNLSGLLRPQQ 55
                56889998889***************99999998887 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.9e-05     0.022      28      75 ..      23      59 ..       4     126 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
      AAA_25 28 gllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVl 75
                ++  +++++ l+Ga g+GK+tl ++l+     G      ++p+qg+Vl
  CTQ29632.1 23 DF-SRHAVTGLVGANGCGKSTLFMNLS-----GL-----LRPQQGAVL 59
                55.6899*****************996.....33.....334555555 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00013      0.16      17      82 ..      15      78 ..       9     168 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00013
                HHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE----------------- CS
        MeaB 17 ellerllakaGraqvvGltGvPGaGkstlvealglelrrrGkrvavlavDPsspftGGsilGDklR 82
                 +l+ l+ +  r  v Gl G  G Gkstl  +l   lr   ++ avl    + +++   +l  + +
  CTQ29632.1 15 PVLKGLTLDFSRHAVTGLVGANGCGKSTLFMNLSGLLRP--QQGAVLWQGEALNYSKRGLLALRQQ 78
                57777888888999****************999988864..3445555555555555555555555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00013      0.16       4      26 ..      32      56 ..      31      73 .. 0.84
   2 ?   -1.1   0.0       1.4   1.7e+03      24      45 ..     218     239 ..     185     248 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
                EE--SSSSHHHHHHHGGGGB..S-- CS
       AAA_5  4 LvGppGtgKselaerlaaal..nre 26
                LvG+ G+gKs+l + l+ +l  ++ 
  CTQ29632.1 32 LVGANGCGKSTLFMNLSGLLrpQQG 56
                8******************976554 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.4
                 S--EEEEE--TT--HHHHH--B CS
       AAA_5  24 nreveyvqltrdtteedlkgrr 45 
                 +++ e+ ++ + + ++ l++++
  CTQ29632.1 218 GDPGEVFACAETMDRAGLTQPW 239
                 3334444444555555555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   6.8e-05     0.082      29     127 ..      32     183 ..      24     211 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.8e-05
      AAA_16  29 lsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala..................... 106
                 l+G+ G+GKs+l   l   l+ + g +l++    + s++ ++al       + ++ + ++    +++ + + +++ +a                     
  CTQ29632.1  32 LVGANGCGKSTLFMNLSGLLRPQQGAVLWQGEALNYSKRGLLALR------QQVATVFQD---PDQQIFYTDIDSDIAfslrnlgvaeeeiarrvdeal 121
                 89***************9999998888777777772332222222......222222222...222222333333333333333333344444444555 PP

      AAA_16 107 .........................................avpelagaeasrllellkrll 127
                                                          +++ l++ ++ ++ + ++r++
  CTQ29632.1 122 tlvdaqgfrqqpiqclshgqkkrvaiagalvlqaryllldePTAGLDPRGRAQMIAIIRRIV 183
                 56666666666666666776666666666666666666666666666666666666666665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00018      0.21       3      85 ..      31     126 ..      29     178 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
                 EEEESTTSSHHHHHHHHHT.............STEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEEEEEET CS
    MMR_HSR1   3 aivGrpNvGKStLinaltg.............ekaivsdkpgtTrdinegrvklkg.keielvDtpGliegaseek.glgkaflaleeadlillvvda 85 
                 ++vG    GKStL+  l+g             e+   s++    +  + ++v  +  ++i  +D+   i   s ++ g++++  a +++d +l +vda
  CTQ29632.1  31 GLVGANGCGKSTLFMNLSGllrpqqgavlwqgEALNYSKRGLLALRQQVATVFQDPdQQIFYTDIDSDIA-FSLRNlGVAEEEIA-RRVDEALTLVDA 126
                 79***************97555544444433223344444444444444444322235566666555222.11122133333332.335666666664 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.016        20     116     161 ..     107     153 ..      84     161 .. 0.85
   2 ?    4.2   0.0     0.025        30      23      51 ..     165     193 ..     156     195 .. 0.91
   3 ?   -0.8   0.0      0.86     1e+03       1      10 [.     206     215 ..     206     220 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.016
                 S-BHHHHHHHHHHHHHHHHHHTTTSE.EEEEE-HHHHHHHHHHHHT- CS
  His_Phos_1 116 gEsledvaaRvaaaleelaarheget.vlvVsHggvirallarllgl 161
                 g   e++a+Rv++al  + a+   ++ + + sHg   r+++a +l l
  CTQ29632.1 107 GVAEEEIARRVDEALTLVDAQGFRQQpIQCLSHGQKKRVAIAGALVL 153
                 5566899**********9999988888*************9999855 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.025
                 --B-HHHHHHHHHHHHHHTTS---EEEE- CS
  His_Phos_1  23 vpLteeGreqAealaerlagepidaiysS 51 
                 + L+++Gr+q+ a+ +r+ g++ ++++sS
  CTQ29632.1 165 AGLDPRGRAQMIAIIRRIVGQGRRVVISS 193
                 679******************99999999 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.86
                 EEEEE---BT CS
  His_Phos_1   1 lyLvRHGete 10 
                 +y++RHGe+ 
  CTQ29632.1 206 VYVLRHGEVL 215
                 699****975 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00021      0.25      26      55 ..      27      56 ..      19      67 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
                HHHHHHHS--SHHHHHHHHHHHHHHS--TT CS
        MukB 26 elvttlsGgnGaGksttmaafvtaliPdls 55
                + vt l G+nG Gkst  + +   l P + 
  CTQ29632.1 27 HAVTGLVGANGCGKSTLFMNLSGLLRPQQG 56
                469**************9999888888765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00027      0.32       4      39 ..      32      72 ..      30     132 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
      AAA_28  4 itGgestGKTtlleaLa.....argypvv.pEaareileekl 39
                ++G+ ++GK+tl  +L+     ++g +    Ea   + + +l
  CTQ29632.1 32 LVGANGCGKSTLFMNLSgllrpQQGAVLWqGEAL-NYSKRGL 72
                78**************977665556554414443.4444444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00022      0.27       4      31 ..      32      62 ..      29     182 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00022
      AAA_33  4 lvGlpGsGKstlaerl...lkklgavllssd 31
                lvG++G+GKstl  +l   l+++++ +l + 
  CTQ29632.1 32 LVGANGCGKSTLFMNLsglLRPQQGAVLWQG 62
                89***********998555666555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1895.44
//
Query:       CTQ29633.1  [L=233]
Description: Cobalt transport protein CbiQ [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-47  160.3  19.7    5.8e-47  160.1  19.7    1.0  1  CbiQ      Cobalt transport protein
  ------ inclusion threshold ------
        3.5    7.3  11.0       0.44   10.2   6.0    2.1  2  DUF2244   Integral membrane protein (DUF2244)


Domain annotation for each model (and alignments):
>> CbiQ  Cobalt transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1  19.7   6.5e-51   5.8e-47       1     211 [.      18     229 ..      18     233 .] 0.98

  Alignments for each domain:
  == domain 1  score: 160.1 bits;  conditional E-value: 6.5e-51
                 SSCCCCS-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHTTS---HHHHHHHCCCHCHHHHHHHHHHE.......EECTTEEE.......E-TT CS
        CbiQ   1 gksvlhrldprvkliwlfllllalvlapnlvtlliiiallllllllvilprvlaqalilpllflllgllillfqlittegefvfaggg....qisitse 95 
                 ++++l + + r++l+wl+l+ la++l+ + ++l++   + l ++ll+++ ++++++++lp++fll+g+l++lf ++++ +++++a ++     i+i  +
  CTQ29633.1  18 QSRWLQVAPERKFLLWLLLMALAFTLPAWGQALTLALTAALTCWLLRVSFWRWCRWMALPFGFLLVGVLTILF-SVSRDPQMLLASIRlgafSIGISAQ 115
                 689**********************************************************************.899999***9999999999****** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHCCCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS..SHHHHHHHHHHHHHHHHHHHH CS
        CbiQ  96 GllrglllalRiltllslllllalTTppeeltsslerlgvPlelalillLayRfiflLleevqrikqAqklRlgdsklgirrslrslgkliaalflral 194
                 Gl ++ ++++R+l++++++l+l+l+ p+++l+  l+r +vP+ l++++lL++Rfif+Ll+e+ +i++Aq+lR+g+   ++ + +rsl++l++ lf+r+l
  CTQ29633.1 116 GLAVAGETFWRSLAAMAATLWLVLNLPFPQLIILLKRGRVPRLLTEQILLTWRFIFILLDEAMAIHRAQTLRFGYG--SVPQGYRSLAMLVGLLFTRVL 212
                 ****************************************************************************..********************* PP

                 HHHHHHHHHHHTTS-SS CS
        CbiQ 195 kraervalAmeaRGYtg 211
                  r++++ +A++++ Y+g
  CTQ29633.1 213 LRYQQMSTALDIKLYQG 229
                 ****************9 PP

>> DUF2244  Integral membrane protein (DUF2244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.4      0.11   9.9e+02      10      34 ..      28      52 ..      16      67 .. 0.62
   2 ?   10.2   6.0   4.9e-05      0.44       9      70 ..      46     107 ..      43     124 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.11
     DUF2244 10 rgflllllalalvslvialafllaG 34
                r+fll ll++al+++++a + +l  
  CTQ29633.1 28 RKFLLWLLLMALAFTLPAWGQALTL 52
                5666666666666666665555433 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 4.9e-05
     DUF2244   9 prgflllllalalvslvialafllaGawpvlpFaglevlalalafrvsarhardrEeitltd 70 
                 + ++l+l l  al++++  + f+    w+ lpF  l v +l++ f vs   +    +i+l +
  CTQ29633.1  46 WGQALTLALTAALTCWLLRVSFWRWCRWMALPFGFLLVGVLTILFSVSRDPQMLLASIRLGA 107
                 67899999999************************************988777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 2026.99
//
Query:       CTQ29634.1  [L=93]
Description: Cobalt transport protein CbiN [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-28   99.0   0.3    1.5e-28   98.6   0.3    1.1  1  CbiN             Cobalt transport protein component CbiN
  ------ inclusion threshold ------
       0.21   11.6   0.3        1.9    8.5   0.0    2.1  2  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> CbiN  Cobalt transport protein component CbiN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.3   1.6e-32   1.5e-28       2      66 ..       5      69 ..       4      70 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 1.6e-32
        CbiN  2 llllllvvllavvplflvkgaeFgGaDdqaeevIeeiapdyepwfeplweppsGEiESlLFalQA 66
                l+ll++v++l+++p+f+++g eFgG+D++ae +I+ +apdy+pwf+pl+ep+sGEiESlLF+lQ 
  CTQ29634.1  5 LILLAMVAALMILPFFINHGGEFGGSDGEAESQIQVVAPDYQPWFQPLYEPASGEIESLLFTLQG 69
                689*************************************************************6 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.4      0.05   4.5e+02      25      34 ..       7      16 ..       2      20 .. 0.68
   2 ?    8.5   0.0   0.00022       1.9      10      35 ..      55      81 ..      55      91 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.05
                     XXXXXXXXXX CS
  Gram_pos_anchor 25 llallggllL 34
                     lla++++l++
       CTQ29634.1  7 LLAMVAALMI 16
                     5666666654 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00022
                     XXXXXXXXXXXXXXXXXXXXXXXXX.X CS
  Gram_pos_anchor 10 PkTGengnifltaaGllallggllL.l 35
                     P  Ge +++++t+ G+l +++ + + +
       CTQ29634.1 55 PASGEIESLLFTLQGSLGAAVIFYIlG 81
                     899************999998887763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 816.80
//
Query:       CTQ29635.1  [L=245]
Description: Cobalt transport protein CbiM [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-54  184.0  16.1    4.2e-54  183.5  16.1    1.2  1  CbiM      Cobalt uptake substrate-specific transmembrane regi


Domain annotation for each model (and alignments):
>> CbiM  Cobalt uptake substrate-specific transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.5  16.1   2.4e-58   4.2e-54       1     204 [.      32     238 ..      32     239 .. 0.95

  Alignments for each domain:
  == domain 1  score: 183.5 bits;  conditional E-value: 2.4e-58
        CbiM   1 HipdgiLspavllaayavalallalalrrlrkeldear..vpllallaafifaaqminipipggtslHllgavlaaiLlGpwaaflavavvlllqallf 97 
                 Hi++g+L+p ++la++++ l++l+++l rlr+ ++e++   +llal++afif+++ ++ip  +g+++H++g++la iL+Gp ++++  a+vll+qall+
  CTQ29635.1  32 HIMEGFLPPMWALAWWLLFLPCLWYGLVRLRRIVQEESnqKVLLALCGAFIFVLSALKIPSVTGSCSHPTGVGLAVILFGPGVVAVLGAIVLLFQALLL 130
                 *********************************99665579********************************************************** PP

        CbiM  98 gdGGitaLGaNilnmavigvllaylvyrllsrlasskkrvalaaflaallsvvlaallvalelals.gleas...lsltaalaamllvhlpvgilEgvi 192
                 ++GG+t+LGaN ++mavig++++ylv++l +r      r+ +++fl+a+l+ ++++++++++l+++ + +a+    s+++++ +++l+++p++i+Eg++
  CTQ29635.1 131 AHGGLTTLGANGMSMAVIGPMVGYLVWKLACRA---GIRRDVGVFLCAMLADLMTYFVTSVQLGVAfPDPATgagGSIAKFMGIFCLTQIPIAIAEGLL 226
                 ****************************76666...689***************************7776669999999******************** PP

        CbiM 193 Taaivkalkkvr 204
                 T++i+  l+k r
  CTQ29635.1 227 TVMIYDQLTKRR 238
                 *****9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1867.67
//
Query:       CTQ29636.1  [L=236]
Description: Cobalt-precorrin-2 C(20)-methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-39  136.2   0.8    1.8e-39  135.9   0.8    1.0  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
  ------ inclusion threshold ------
       0.18   10.4   0.0       0.24   10.0   0.0    1.1  1  DUF1302       Protein of unknown function (DUF1302)


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.8     2e-43   1.8e-39       1     206 [.       4     210 ..       4     215 .. 0.91

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 2e-43
  TP_methylase   1 klylVGvGpGdpellTvrAlralktadvvlgddsr......aleilldllaeel...eleapmgkekepleeayeeiaealaealragkdVvllvsG 88 
                   kly    GpG+++l+TvrA+r+l + dv+++++ r      al+i++++l   +     ++pm ++  + e++++++a+ala++++ag++V +++ G
    CTQ29636.1   4 KLYALSSGPGAADLITVRAARILGQLDVLYAPAGRkggdslALSIVREYLGAHTevrCCHFPMSADSAEKEAVWNDVAAALAQEVAAGRQVGFITLG 100
                   7999*************************877744444555*********9999*9999*******999**************************** PP

  TP_methylase  89 DPlvygtgselvealrareagieveviPGvsslqaaaarlgiplteggevlsvllpglakeeereleallangdtlvllkaprklaelaelLkealy 185
                   D ++++t+  l++++   +     e++PGv+s+ a+aar+++pl++ +++l+v+   +a  +e++++a+l + d+lvl+k   ++a++++lL++a  
    CTQ29636.1 101 DAMLFSTWVFLLQRIGCPD---WLEIVPGVTSFAAIAARAKTPLAMEQQSLAVI-SCTA--PEADIAAALRQHDSLVLMKVYGRFARIKALLAQA-- 189
                   ***********98777733...39******************************.5555..9999**************9999************.. PP

  TP_methylase 186 ddttpvavveragtedervvr 206
                   + ++ + ++++a++++e+ +r
    CTQ29636.1 190 GLLDAALMMSEATLPGEQCWR 210
                   7788************99875 PP

>> DUF1302  Protein of unknown function (DUF1302)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   2.6e-05      0.24     352     445 ..     125     218 ..     122     233 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 2.6e-05
     DUF1302 352 ggvsvggElsyrpnmPlqinttel.llsaeaasalaga.aaaaaaapgea.v.pgyarkdttqaqltaikvfgpvlgadsltllaEvgvthlpdlesa 445
                 +gv  ++ ++ r ++Pl+++++ l ++s +   a  +a  aaa  + ++  + + y r+  ++a l    ++++ l ++++tl +E  + +l+++++ 
  CTQ29636.1 125 PGVTSFAAIAARAKTPLAMEQQSLaVISCT---AP-EAdIAAALRQHDSLvLmKVYGRFARIKALLAQAGLLDAALMMSEATLPGEQCWRRLREVSDD 218
                 56667778999*************433222...22.2212233333333323489**************************************99654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1809.12
//
Query:       CTQ29637.1  [L=264]
Description: Sirohydrochlorin cobaltochelatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.7e-103  344.1   0.0   5.3e-103  343.9   0.0    1.0  1  CbiK      Cobalt chelatase (CbiK)
    3.1e-05   24.3   0.0     0.0043   17.4   0.0    2.4  2  CbiX      CbiX


Domain annotation for each model (and alignments):
>> CbiK  Cobalt chelatase (CbiK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.9   0.0    6e-107  5.3e-103       1     261 [.       3     256 ..       3     257 .. 0.99

  Alignments for each domain:
  == domain 1  score: 343.9 bits;  conditional E-value: 6e-107
                 EEEEEEE---S-HHHHHHHHHHHHHHHHHC-TTSEEEEEES-HHHHHHHHHHH------HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHG CS
        CbiK   1 kaillvsFGtsykdarektiekiekkvaaefpdyevfraftSsiiikklkerdeievdtpeealeklkeegykevivqplhiipGeeyeklkreVkkfk 99 
                 ka+l+vsFGtsy+d+rek+i+++e+++aa++pd+++fraftS +ii+kl++rd+i++dtp +al+kl+e+gy++v++q+lhii+G+eyek++reV++++
  CTQ29637.1   3 KALLVVSFGTSYHDTREKNIAACERDLAASCPDRTLFRAFTSGMIIRKLQQRDGIHIDTPLQALQKLAEQGYQDVAIQSLHIINGDEYEKIVREVQSMR 101
                 8************************************************************************************************** PP

                 GGSSEEEEE--SCS......SHHHHHHHHHHHHTTS----TTEEEEEEE---SCHHHHHHHHHHHHHHHCT-S.EEEEETTSSS-HHHHHHHHHHHT-- CS
        CbiK 100 kkfekiklgrPlldykGvedsteDykevvealkdeierarkdealvfvgHGtehesnavyaeldkvlkekdfkqvvvgtvegyPeveevieelkkkgik 198
                 + f++++lg+Pll+       + Dy ++++al+++++++  +e +vf+gHG++h+++a+ya+ld+++  ++f    vg+ve+yP+v+ vi+el  +g++
  CTQ29637.1 102 PRFQRLTLGAPLLS------GHGDYVQLMQALRQQMPPLAATERVVFMGHGASHHAFAAYACLDHMMAVQGFP-ARVGAVESYPKVDIVINELSRQGVT 193
                 **************......599***********************************************998.9************************ PP

                 EEEEEE-SSS--HHHHCCCCSSSTTSHHHHHHHTT--EEE----GGGSHHHHHHHHHHHHHHH CS
        CbiK 199 evkliPlmlvAGdHaknDmasdeedswkealeaaGikveiilkgLGeieeirsifikhikeai 261
                  v+l+PlmlvAGdHa nDmasde+dswk++++aaGi ++ +l+gLGe++++r++f++h+++a+
  CTQ29637.1 194 GVHLMPLMLVAGDHAINDMASDEDDSWKTRFNAAGIPATPWLNGLGENPAVRAMFVAHLQQAL 256
                 ************************************************************986 PP

>> CbiX  CbiX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0039        35      42      84 ..      64     105 ..      60     131 .. 0.83
   2 !   17.4   0.0   4.8e-07    0.0043      27      74 ..     168     214 ..     145     249 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0039
                 CSSHHHHC-SBSEEEEEEESSSSSHHHHTHHHHHCT--SSSS- CS
        CbiX  42 ealrelaeqgvkrivvvPlflfaGvhvkeDIpeeleeaeeahp 84 
                 +al++laeqg++++++  l + +G  +++ I +e++ ++ +++
  CTQ29637.1  64 QALQKLAEQGYQDVAIQSLHIINGDEYEK-IVREVQSMRPRFQ 105
                 799*************9999999999998.8888888887776 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 4.8e-07
                 CCEECESCCCECCSCCSSHHHHC-SBSEEEEEEESSSSSHHHHTHHHH CS
        CbiX  27 pvelgfleleepsleealrelaeqgvkrivvvPlflfaGvhvkeDIpe 74 
                 p ++g +e + p+++ +++el++qgv+ + ++Pl+l aG h+ +D+ +
  CTQ29637.1 168 PARVGAVE-SYPKVDIVINELSRQGVTGVHLMPLMLVAGDHAINDMAS 214
                 56677766.679******************************999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2174.03
//
Query:       CTQ29638.1  [L=261]
Description: Cobalt-precorrin-6A reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-72  241.9   0.0    7.3e-72  241.7   0.0    1.0  1  CbiJ      Precorrin-6x reductase CbiJ/CobK


Domain annotation for each model (and alignments):
>> CbiJ  Precorrin-6x reductase CbiJ/CobK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.7   0.0     4e-76   7.3e-72       2     227 ..       6     246 ..       5     257 .. 0.95

  Alignments for each domain:
  == domain 1  score: 241.7 bits;  conditional E-value: 4e-76
                 EEEE-SSHHHHHHHHHHHHTT--EEEEE---SSS----S..S-EEES--SHHHHHHHHHHHT--EEEE-S-TT-HHHHHHHHHHHHHHT-EEEEE---- CS
        CbiJ   2 ililgGTsearelaeaLaeagievvvsvateygaellpekklevrvgrlgeeglaellreekidlvvDATHPfAaeisanaaeackelgipylrleRps 100
                 +l++gGTs+ar+++++L++a++++++svat +g++l+ + ++++r+gr++ +++ae+lr+++ + v+DA+HP+A+ +s+n+++ac+++g+ + r++Rp+
  CTQ29638.1   6 VLVIGGTSDARAICQQLDAADVRYTLSVATPTGERLAGDIRGQIRCGRMEWQQMAEWLRAQRTRWVIDASHPYAEVVSQNIVRACDSVGVLLSRYQRPE 104
                 8************************************************************************************************** PP

                 ---.....EEEEESSHHHHH.........EEEESTSTTGGGGSTT...SEEEEEESS--SS.--SSS....SEEEEE--SS--HHHHHHHHHHTT--EE CS
        CbiJ 101 wea.....kiievdsleeaaella.....vllttGskelaafaealkkerllaRvlptpeslekalplglkakeiiamrGpfskelerallreykidvl 189
                 + +      ++ v +l+ea+ +++     +llttGsk+laa+ + l++++llaRvlp pe+++++ +lg+   ei+a+ Gpfs+e++ a++r++++dv+
  CTQ29638.1 105 QLNdlrhpLLHVVGDLNEACAVARrlgerILLTTGSKDLAAWRAGLAEKTLLARVLPVPEVVQHCSDLGFGVGEIFALCGPFSAEFNAAFYRQCRADVV 203
                 9989****************8888******************999999*************************************************** PP

                 EEES--SS.TTTHHHHHHHHTT-EEEEE---....--EE.E-S CS
        CbiJ 190 VtKeSGgaGgteeKleaArelgipvivikRp....evee.vsd 227
                 VtK+SG++Gg++eK++ + ++gip+ivi+Rp    + +e  ++
  CTQ29638.1 204 VTKASGAEGGYQEKVQPCLDAGIPCIVITRPaplvTGDElLQS 246
                 *******************************876633343444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1939.54
//
Query:       CTQ29639.1  [L=241]
Description: Cobalt-precorrin-3B C(17)-methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-39  134.8   0.3    4.4e-39  134.6   0.3    1.0  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.3   2.5e-43   4.4e-39       1     212 [.       1     208 [.       1     209 [. 0.91

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 2.5e-43
  TP_methylase   1 klylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeeleleapmgkekepleea.yeeiaeal..aealragkdVvllvsGDPlvyg 94 
                   +l ++G+GpG+ + +T++A++al++a++v+g++  ++++++++  +           k++  ++ ++ei++    +e+++ag++V+l++sGD  +yg
    CTQ29639.1   1 MLSVIGIGPGSQAMMTMEAVEALQAAEIVVGYK-TYTHLVKAFTGD-----------KQVIKTGmCKEIERCQaaIELAQAGHNVALISSGDAGIYG 85 
                   6899*****************************.999999876543...........444444447777777777********************** PP

  TP_methylase  95 tgselvealrareagieveviPGvsslqaaaarlgiplteggevlsvl..lpglakeeereleallangdtlvllkapr.k.....laelaelLkea 183
                   +++ ++e + +++ +iev+ iPG+++  aaa+ lg+pl ++++  s++  l+++  +e+r ++a  a  d+++ +++pr +     la++ +lL+++
    CTQ29639.1  86 MAGLVLELVNKQQLDIEVRLIPGMTASIAAASLLGAPLMHDFCHISLSdlLTPWPVIEKRIVAAGEA--DFVICFYNPRsRgreghLARAFALLAAS 180
                   **************************************************************99888..**********758899************ PP

  TP_methylase 184 lyddttpvavveragtedervvrgtleel 212
                    +  +tpv vv+ ag+++++ + +tl+e+
    CTQ29639.1 181 -KSADTPVGVVKSAGRKKQEKWLTTLGEM 208
                   .88889************99999***997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1842.48
//
Query:       CTQ29640.1  [L=351]
Description: Protein CbiG [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-34  117.0   0.6    6.8e-34  115.7   0.5    1.7  2  CbiG_N    Cobalamin synthesis G N-terminal
    2.1e-24   86.3   0.0    1.2e-23   83.9   0.0    2.0  2  CbiG_C    Cobalamin synthesis G C-terminus
    5.7e-09   36.0   0.0    1.2e-08   34.9   0.0    1.6  1  CbiG_mid  Cobalamin biosynthesis central region


Domain annotation for each model (and alignments):
>> CbiG_N  Cobalamin synthesis G N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.96   5.8e+03      59      71 ..      17      29 ..      10      33 .. 0.80
   2 !  115.7   0.5   1.1e-37   6.8e-34       3      82 .]      55     134 ..      53     134 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.96
                THHHHHHHHHHHT CS
      CbiG_N 59 gAnelAeeiaall 71
                g+ +lA+++aa+l
  CTQ29640.1 17 GGVRLAKRLAAML 29
                6678999999987 PP

  == domain 2  score: 115.7 bits;  conditional E-value: 1.1e-37
                 HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EEEEEE-TT.TTHHHHHHHHHHHTT-EE-XXXXX. CS
      CbiG_N   3 lrelfkeydalvfilaaGivvRliapllkdKktDpaVvvvdeagrfvisllsGhlggAnelAeeiaallgaepviTtatd 82 
                  re+f++ +al+fi+a+Gi+vR++apl++dK +DpaVvv+de++r+visllsGh ggAn+l++ +a +l+a pviTtatd
  CTQ29640.1  55 AREAFSSFSALIFIGATGIAVRVLAPLVNDKLSDPAVVVIDERARHVISLLSGHAGGANALTRYLAGMLDADPVITTATD 134
                 689****************************************************************************8 PP

>> CbiG_C  Cobalamin synthesis G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.31   1.8e+03      52      71 ..      21      42 ..      12      55 .. 0.75
   2 !   83.9   0.0     2e-27   1.2e-23       1     114 [.     231     346 ..     231     348 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.31
                HHHHCT..STEEEE-HHHHHCH CS
      CbiG_C 52 laeklg..lplktfsaeeLaav 71
                la++l   lpl+++++e+L++ 
  CTQ29640.1 21 LAKRLAamLPLTCYTSEALQEE 42
                5555532279*********975 PP

  == domain 2  score: 83.9 bits;  conditional E-value: 2e-27
                 EEEEEEE-SS--HHHHHHHHHHHHHHCT--GGGEEEEEESSCCSHHHHHHHHHHHCTSTEEEE-HHHHHCHH..CSCT-CHHHCCCSSS-HHHHHHHHH CS
      CbiG_C   1 lvvGiGcrrgtsaeeieeaieealeeaglseeavaalatidlKadepgllelaeklglplktfsaeeLaave..vpnpsefvkkevGvpsVaEaaAlla 97 
                 +v+GiGcrr+t+++ +++++++ l++++l++ a++a+ +++lKa+epgl +la+++++p++tfsae+L++ e  +   s+fv+++vGv+sV+ + A l 
  CTQ29640.1 231 VVAGIGCRRDTPCALLSTLLDRQLAAQRLDPLALKAIGSVSLKANEPGLRQLAHRCRVPFETFSAEALREHEhrF-PASSFVRETVGVGSVSGPVAWLL 328
                 689********************************************************************9866.89******************977 PP

                 C..EECSCEEEETTEEEE CS
      CbiG_C  98 a.arllvpKqakggvTvA 114
                 + ++l  +  +++gvT+ 
  CTQ29640.1 329 SqGNLSGETLREQGVTIT 346
                 635787777788899886 PP

>> CbiG_mid  Cobalamin biosynthesis central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   2.1e-12   1.2e-08       2      73 ..     140     216 ..     139     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 2.1e-12
    CbiG_mid   2 alDilgrpfGwri.egegaltevsaalvngepvavlqdvrlegterlertlpehvdveyke....kaliwitprqlr 73 
                 alD+l+ +++ r+ + ++a+++v+++lv+g++v++++d + +g+   ++++  +   +       +ali++t r+  
  CTQ29640.1 140 ALDTLAFQLNARMtDFRAAVKTVNQMLVSGKRVGLWCDGEFTGALSRCDQRGFIPVSDLARlpalDALICVTLRRSL 216
                 9************888999****************************99998888877774689********99864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2910.78
//
Query:       CTQ29641.1  [L=257]
Description: Cobalt-precorrin-4 C(11)-methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-45  154.4   0.8    4.7e-45  154.2   0.8    1.0  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
  ------ inclusion threshold ------
      0.075   13.4   0.0       0.23   11.8   0.0    1.8  1  Radical_SAM   Radical SAM superfamily


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2   0.8   5.2e-49   4.7e-45       2     212 ..      10     215 ..       9     216 .. 0.92

  Alignments for each domain:
  == domain 1  score: 154.2 bits;  conditional E-value: 5.2e-49
  TP_methylase   2 lylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeeleleapmgkekepleeayeeiaealaealragkdVvllvsGDPlvygtgse 98 
                   +++VG+GpGd+el+T++++r+l++a+vv++++s+  + ll+++++       +++  ++++ + e+i + + + ++agk+Vv+l +GD ++yg+++e
    CTQ29641.1  10 VWFVGAGPGDRELITLKGYRLLQQAQVVIYAGSLINTELLAYCPP-------QAECHDSAALHLEQILDLMEAGVKAGKTVVRLQTGDVSLYGSVRE 99 
                   689*****************************9988888899875.......3333445555589999999************************** PP

  TP_methylase  99 lvealrareagieveviPGvsslqaaaarlgiplteggevlsvl....lpglakeeereleallangdtlvllkaprklaelaelLkea.lyddttp 190
                     e+l++  +gi+++v+PGvs++  aaa lg++ t  ++++s++    + ++  +++++lea+++++++++++ +++++ ++ae+L e  ++  ttp
    CTQ29641.1 100 QGEELTR--RGIRWQVVPGVSAFLGAAAELGVEYTVPEVSQSLIitrlEGRTPVPAREQLEAFASHQTSMAIYLSVQRIHRVAERLVEGgYP-ATTP 193
                   *******..9**************************************77777889*********************************555.577* PP

  TP_methylase 191 vavveragtedervvrgtleel 212
                   vav+ +a++++ ++vrgtl+++
    CTQ29641.1 194 VAVIYKATWPESQTVRGTLADI 215
                   *******************986 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.5e-05      0.23      13     121 ..      51     184 ..      50     243 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.5e-05
                  TTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTC...............................CCTEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............................xxxxx RF
  Radical_SAM  13 fCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlakla...............................vpgir 79 
                  +C+         +++ l +e+il++++++ ++ g+ +v l  g+++ly    e  e+l ++                                    r
   CTQ29641.1  51 YCPPQA---ECHDSAALHLEQILDLMEAG-VKAGKTVVRLQTGDVSLYGSVREQGEELTRRGirwqvvpgvsaflgaaaelgveytvpevsqsLIITR 144
                  555554...5677788999**********.9*****************66666666666665555666666666655444455555444443322222 PP

                  EEEEECSSCHGHHHHHHHHHTT.-SEEEEEEBSSSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  80 itvetngtlpdeeklerllelg.vdrvslgleaaddekvlklm 121
                  +   t+ +   +e+le+++       ++l+++ ++     +l+
   CTQ29641.1 145 LEGRTPVPA--REQLEAFASHQtSMAIYLSVQRIHRV-AERLV 184
                  222222222..66666666655555555555555553.33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2171.35
//
Query:       CTQ29642.1  [L=189]
Description: putative cobalt-precorrin-6Y C(15)-methyltransferase (decarboxylating) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-08   34.9   0.2    3.1e-08   33.4   0.2    1.8  1  MTS              Methyltransferase small domain
    1.2e-07   31.8   0.1    1.5e-07   31.4   0.1    1.1  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    2.7e-07   30.5   0.1    6.6e-07   29.2   0.1    1.8  1  Methyltransf_31  Methyltransferase domain
    1.8e-06   27.7   0.1    2.7e-06   27.2   0.1    1.2  1  Cons_hypoth95    Conserved hypothetical protein 95
    3.6e-06   26.4   0.0    4.2e-06   26.2   0.0    1.1  1  GidB             rRNA small subunit methyltransferase G
    5.7e-06   25.9   0.1    7.1e-06   25.6   0.1    1.1  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    2.3e-05   24.0   0.0      4e-05   23.1   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
    3.9e-05   24.3   0.1    0.00012   22.7   0.1    1.8  2  Methyltransf_25  Methyltransferase domain
    6.3e-05   23.0   0.1    8.5e-05   22.5   0.1    1.3  1  Methyltransf_18  Methyltransferase domain
    0.00032   21.4   0.1    0.00092   19.9   0.0    1.7  2  Methyltransf_12  Methyltransferase domain
     0.0031   17.2   0.1     0.0059   16.3   0.1    1.4  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
     0.0035   17.1   0.0     0.0044   16.8   0.0    1.1  1  Met_10           Met-10+ like-protein
     0.0066   17.1   0.1       0.02   15.5   0.0    1.8  2  Methyltransf_11  Methyltransferase domain
     0.0071   15.7   0.0      0.013   14.8   0.0    1.4  2  CMAS             Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
      0.049   13.5   0.0      0.091   12.6   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
      0.068   12.9   0.0       0.29   10.8   0.0    1.8  2  UPF0020          Putative RNA methylase family UPF0020
      0.077   12.3   0.0       0.11   11.8   0.0    1.3  1  Methyltransf_2   O-methyltransferase domain
       0.09   11.8   0.0       0.18   10.9   0.0    1.4  2  RrnaAD           Ribosomal RNA adenine dimethylase
      0.096   12.8   0.0        7.8    6.6   0.0    2.1  2  FtsJ             FtsJ-like methyltransferase
       0.14   11.6   0.0       0.23   11.0   0.0    1.3  1  DOT1             Histone methylation protein DOT1


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.2   3.4e-11   3.1e-08      23     138 ..      23     130 ..      16     155 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 3.4e-11
                 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHHH CS
         MTS  23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeveekkfdlivsNPPfhagkatelavaee 120
                  l +l+ +++++++D+G+G+G +++++a ++p ++vt+++ +a Al++  en ++ +++ + +va  +  +v+ +k d+i +      g+       ++
  CTQ29642.1  23 ALAKLELHRARHLIDIGAGTGSVSIEAALQNPALRVTAIERQADALRLLAENRQRFGCDnIAIVAGVAPLAVA-DKADAIFMG-----GSG---GHLTA 112
                 56778888999***********************************************977777766666666.889998653.....332...33566 PP

                 HHHHHHHHEEEEEEEEEE CS
         MTS 121 liaeAkeaLkegGeLliV 138
                 li  + ++L++gG+L++ 
  CTQ29642.1 113 LIDWSLAQLHPGGRLVMT 130
                 666666667777766665 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   1.6e-10   1.5e-07      56     175 ..      14     133 ..       4     168 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.6e-10
                 E--HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTCSEEEEES-GGGTTGGG-SEEEEEESSBBSS CS
        PCMT  56 iSaphmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldlenvivvvgDGrkGyeekaPYdaihvgaaape 154
                 + +  + alal  lel++  + +++G+G+G    + a l ++  rv +ier+++  +   +n ++ + +n+++v g     +++ka  dai++g +  +
  CTQ29642.1  14 MTKEAVRALALAKLELHRARHLIDIGAGTGS-VSIEAALQNPALRVTAIERQADALRLLAENRQRFGCDNIAIVAGVAPLAVADKA--DAIFMGGSGGH 109
                 55667889999*******************6.56889999999***********9999999************************9..9*****99888 PP

                 --HHHHH....TEEEEEEEEEEESB CS
        PCMT 155 iPealid....QLkeGGrlvvPvge 175
                 + +alid    QL++GGrlv+    
  CTQ29642.1 110 L-TALIDwslaQLHPGGRLVMTFIL 133
                 7.455544444*********97543 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   7.4e-10   6.6e-07       3      61 ..      31      88 ..      29     167 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 7.4e-10
  Methyltransf_31  3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqg 61
                     ++ +++D+G+GtG  ++e+a + +p  +v+ i+++++a++l  en+q+ g dn+   +g
       CTQ29642.1 31 RARHLIDIGAGTGSVSIEAA-LQNPALRVTAIERQADALRLLAENRQRFGCDNIAIVAG 88
                     66789***************.99******************************987765 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1     3e-09   2.7e-06      41      96 ..      31      86 ..       7     103 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 3e-09
                   CC-EEEETT-TTSHHHHHHHHTT.-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEE CS
  Cons_hypoth95 41 egarvLDlfaGsGalglEAlSRg.akkavlvekdkeavkilkenleelkleeetael 96
                   +  +++D+ aG+G++++EA+  + a +++++e+++ a+++l en +++++++ +a++
     CTQ29642.1 31 RARHLIDIGAGTGSVSIEAALQNpALRVTAIERQADALRLLAENRQRFGCDN-IAIV 86
                   456799************86654399***********************997.5544 PP

>> GidB  rRNA small subunit methyltransferase G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   4.7e-09   4.2e-06      45     146 ..      29     129 ..      14     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 4.7e-09
                 S-CCC-.EEEETSTTTTTHHHHHHH-TTSEEEEEES-HHHHHHHHHHHHHCT-SSEEEEES-CCCTTTTT-EEEEEEC-S.SSHHHHHHHHCCCEEEEE CS
        GidB  45 lkekrdkviDvGsGaGlPGipLaiarpelkltLleslekkiaFLeevkeelklenveivearaeekqeeekydvvtsRAl.aslnelteillkllkegg 142
                 l+++r ++iD+G+G G  +i  a+ +p l++t +e++    + L+e  ++++ +n++iv   a      +k d++ + +  ++l  l++++l  l++gg
  CTQ29642.1  29 LHRAR-HLIDIGAGTGSVSIEAALQNPALRVTAIERQADALRLLAENRQRFGCDNIAIVAGVAPL-AVADKADAIFMGGSgGHLTALIDWSLAQLHPGG 125
                 34444.6****************************************************998887.999999999998762689999999999999999 PP

                 EEEE CS
        GidB 143 lila 146
                 ++++
  CTQ29642.1 126 RLVM 129
                 8765 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   7.9e-09   7.1e-06     159     278 ..      29     150 ..      13     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 7.9e-09
        PrmA 159 vkegeevlDvGtGSGiLaiaaa.kLgakkvvavDiDevAvkvakeNaelNkveaklevalseellkeekadvivaNILaevlielaedikklvkeggll 256
                 +++ ++++D+G+G+G  +i aa +  a +v+a+     A++  +eN ++ ++++   va  + l  + kad i+       l+ l++   + +++gg+l
  CTQ29642.1  29 LHRARHLIDIGAGTGSVSIEAAlQNPALRVTAIERQADALRLLAENRQRFGCDNIAIVAGVAPLAVADKADAIFMGGSGGHLTALIDWSLAQLHPGGRL 127
                 4556799************6650556889*************************776765555555689****************************** PP

        PrmA 257 ilSGilkekaeevaealeq.gfe 278
                 ++  il+e  ++  ++l+q g++
  CTQ29642.1 128 VMTFILQENLHSALAHLRQsGIH 150
                 ********999998888765655 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   4.5e-08     4e-05       4      60 ..      34      90 ..      31      98 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.5e-08
                    EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-C CS
  Methyltransf_4  4 vvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgda 60
                     +++iG G G++ ++ A +nP   + +iE + + ++ + ++ ++ ++ N++i+ g a
      CTQ29642.1 34 HLIDIGAGTGSVSIEAALQNPALRVTAIERQADALRLLAENRQRFGCDNIAIVAGVA 90
                    579*************************************************98765 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   1.3e-07   0.00012       2      73 ..      36     106 ..      35     125 .. 0.81
   2 ?   -0.3   0.0       2.1   1.8e+03      22      58 ..     125     162 ..     104     183 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.3e-07
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEEST CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssga 73 
                      +d+G+GtG +++++a + ++ +vt+++ ++++l+  +e+ ++ g++   +++ +  l  +d + D++++ g+
       CTQ29642.1  36 IDIGAGTGSVSIEAALQNPALRVTAIERQADALRLLAENRQRFGCDNIAIVAGVAPLAVAD-KADAIFMGGS 106
                      69*************99779********************999996666677778888877.8999998444 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 2.1
                      SEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGB CS
  Methyltransf_25  22 akvtgvDiseemleaareraeeegl.nvefvqgdaedl 58 
                      ++++++ i +e l  a ++++++g+ +v+++q  +++l
       CTQ29642.1 125 GRLVMTFILQENLHSALAHLRQSGIhEVDCQQLAVSTL 162
                      55555556666666777777766666666666555554 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   9.5e-08   8.5e-05      14      99 ..      31     114 ..      20     152 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 9.5e-08
  Methyltransf_18  14 kgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklkeee.vdtvviaGmGgelileI 99 
                      + ++++DiG+  g ++i+++ ++ a +v+a++ ++ +l+   en ++ g+++   + +  G+++l   + +d++ + G Gg+l + I
       CTQ29642.1  31 RARHLIDIGAGTGSVSIEAALQNPALRVTAIERQADALRLLAENRQRFGCDN---IAIVAGVAPLAVADkADAIFMGGSGGHLTALI 114
                      46799*********************************************65...445567778874444***********998765 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     1e-06   0.00092       2      89 ..      37     121 ..      36     127 .. 0.72
   2 ?   -0.1   0.0       1.8   1.6e+03      19      56 ..     123     160 ..     104     172 .. 0.56

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1e-06
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl.kdirevldni 89 
                      +iG+GtGs++ + + ++p +++t+++ +++a+   +e  ++ + +n + v   a  +      ++ D++++ +   hl + i+ +l+++
       CTQ29642.1  37 DIGAGTGSVSIEAALQNPALRVTAIERQADALRLLAENRQRFGCDNIAIVAGVAPLAVA----DKADAIFMGGSGGHLtALIDWSLAQL 121
                      9*******************************544444444444444555444444433....49999999998888755555666554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.8
  Methyltransf_12  19 pdieytgvDispsaiedakeklakrennnnnnveleal 56 
                      p+ +++ + i ++ ++ a ++l++ + + +++ +l + 
       CTQ29642.1 123 PGGRLVMTFILQENLHSALAHLRQSGIHEVDCQQLAVS 160
                      55555555555566666666666666666555555554 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   6.6e-06    0.0059       4      65 ..      27      87 ..      24     101 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.6e-06
                     H---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEE CS
  Methyltr_RsmB-F  4 LapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivle 65
                     L+++   +++D+ a+ G+  +  a+l +++ +v+A+++++  l+ +aen +r+g+ n+ ++ 
       CTQ29642.1 27 LELHRARHLIDIGAGTGS-VSIEAALQNPALRVTAIERQADALRLLAENRQRFGCDNIAIVA 87
                     7888889999**999987.5677899999****************************99986 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   4.9e-06    0.0044     101     197 ..      32     150 ..      15     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.9e-06
                 T-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---TT-EE..........................EEE CS
      Met_10 101 gevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevireqlad..........................rvv 173
                     +d+ AG G  +i +a    a rv ai+ + ++ ++l en ++   +++   i + ++ ++  ++ad                          r+v
  CTQ29642.1  32 ARHLIDIGAGTGSVSIEAALQNPALRVTAIERQADALRLLAENRQRFGCDNIA--IVAGVAPLAVADKADaifmggsgghltalidwslaqlhpggRLV 128
                 56789***************99*********************9999998875..88888888888899988888888888888888888888888888 PP

                 E--TTTGGGGHHHHHHHEEEEEEE CS
      Met_10 174 mnlpksaieFldkvlaalkdggvi 197
                 m ++   +e l+++la l++ g++
  CTQ29642.1 129 MTFI--LQENLHSALAHLRQSGIH 150
                 8877..567777777777777766 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.2e-05      0.02       2      92 ..      37     125 ..      36     129 .. 0.75
   2 ?   -0.1   0.0       1.7   1.5e+03      19      51 ..     125     158 ..     103     169 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.2e-05
                      EET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl.kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgG 92 
                      d+G+GtG+++ + a +    rv++++  + +l+l  e+ ++ g  ++  +va +  l ++d + D++++  +  h+    ++++     L pgG
       CTQ29642.1  37 DIGAGTGSVSIEAALQNpaLRVTAIERQADALRLLAENRQRFGCdNIA-IVAGVAPLAVAD-KADAIFMGGSGGHLT---ALIDWSLAQLHPGG 125
                      9***********9955568*************9998888887766544.566666699999.999999988777773...44444455555555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.7
                      SEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEE CS
  Methyltransf_11  19 arvvgvDlskemlklakekaseegl.kvefvvad 51 
                      +r+v + + +e l  a ++ +++g+ +v++++  
       CTQ29642.1 125 GRLVMTFILQENLHSALAHLRQSGIhEVDCQQLA 158
                      4444444555555555555555555455555554 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.5e-05     0.013      50      83 ..      19      52 ..       3      84 .. 0.83
   2 ?   -3.1   0.0       4.1   3.7e+03     184     203 ..     116     135 ..     107     148 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
                HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHH CS
        CMAS 50 KldlileklelkpGmtlLdiGcGWGslvrraver 83
                 + l+l klel+   +l+diG+G Gs+ ++a+ +
  CTQ29642.1 19 VRALALAKLELHRARHLIDIGAGTGSVSIEAALQ 52
                567899**********************999866 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.1
                 HHHHHTSTTS---BHHHHHH CS
        CMAS 184 fidkeiFPgGelpsieeiee 203
                 +   ++ PgG+l  +  ++e
  CTQ29642.1 116 WSLAQLHPGGRLVMTFILQE 135
                 55566777777766555554 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0    0.0001     0.091      16     121 ..      23     133 ..       8     158 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.0001
  Methyltransf_23  16 llpk..lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiaekakkaqkdqfdeqeaaepqg..............kfdlIvlrev 91 
                      +l+k  l +   ++diG+GtG+++ +++ +     vt+++    a  +++     + + f         g                d + ++++
       CTQ29642.1  23 ALAKleLHRARHLIDIGAGTGSVSIEAALQNPalRVTAIERQADALRLLA----ENRQRF---------GcdniaivagvaplaVADKADAIFM 103
                      3333336777799**************88866589999999877777652....222222.........1222222222333346666666667 PP

  Methyltransf_23  92 lehvpdppellrqiatllkpgGylllsepl 121
                       ++  ++++l++   + l pgG+l+ + +l
       CTQ29642.1 104 GGSGGHLTALIDWSLAQLHPGGRLVMTFIL 133
                      777777777888888888888888776654 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00033      0.29      29      74 ..      32      77 ..      16      97 .. 0.71
   2 ?   -0.4   0.0      0.85   7.6e+02     153     179 ..     118     144 ..     105     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00033
                TS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH CS
     UPF0020 29 gepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear 74
                 + l+D   G+G++ IEaal+       ++ +++  l+  ae+++r
  CTQ29642.1 32 ARHLIDIGAGTGSVSIEAALQNPALRVTAIERQADALRLLAENRQR 77
                566777778************9888766665555555555555554 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.85
                 HHH-TT..-EEEEEESSHHHHHCC--- CS
     UPF0020 153 krvlrgggrlvlltsenkalekaleer 179
                   +l+ ggrlv+ +  +++l +al++ 
  CTQ29642.1 118 LAQLHPGGRLVMTFILQENLHSALAHL 144
                 456888999999999999999988765 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.11      50      91 ..      19      60 ..       2     117 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
                    HHHHHHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEE CS
  Methyltransf_2 50 vakkvleafdleglkslvDvGGGtGalakaivsayPtikviv 91
                    v + +l++ +l++ ++l+D+G GtG +  +++ + P ++v+ 
      CTQ29642.1 19 VRALALAKLELHRARHLIDIGAGTGSVSIEAALQNPALRVTA 60
                    44456777789****************999999999998876 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0002      0.18      20      70 ..      21      73 ..      14      88 .. 0.78
   2 ?   -2.9   0.0       3.2   2.9e+03     117     141 ..     112     137 ..     108     144 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
                HHHHHHH-GGTTSEEEEES-TTTCCHHH..HHCC-SEEEEE-S-HHHHHHHHC CS
      RrnaAD 20 neIldklnleekltvleigpGkGilTee..LakrakqvvvlElderLakllqk 70
                + +l kl+l     +++ig+G+G  + e  L + a  v+++E   + + ll +
  CTQ29642.1 21 ALALAKLELHRARHLIDIGAGTGSVSIEaaLQNPALRVTAIERQADALRLLAE 73
                568999******************9965227888899*****98776666555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.2
                 HHHHHHHH.GGGGCEEEEEEEEEHHH CS
      RrnaAD 117 qlvkqlle.esrfglvkmllwlqkef 141
                 +l+++ l  ++  g+  m+++lq++ 
  CTQ29642.1 112 ALIDWSLAqLHPGGRLVMTFILQENL 137
                 56666666355567888999999865 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0087       7.8      16      60 ..      27      69 ..      19     106 .. 0.75
   2 ?    4.4   0.0      0.04        36     116     150 ..     112     146 ..     108     163 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0087
                HT-S-TT-EEEECT-TTSHHH.HHHCCT.T.-SEEEEEESSSSHHH CS
        FtsJ 16 fklfkpgktvvDlgaaPGgws.qvllqrlgakgkvvavDlqpmapl 60
                 + +++ ++ +D+ga++G+ s + +lq+  a  +v a+  q  a++
  CTQ29642.1 27 LE-LHRARHLIDIGAGTGSVSiEAALQN-PA-LRVTAIERQADALR 69
                55.678899**********984566666.55.89999998887544 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.04
                 HHHCCHCCCCECCCEEEECCCHCCCHHHHHHHHHC CS
        FtsJ 116 aalelalkllkpggtfvlkifrgeeteallkqlkk 150
                 a + ++l++l pgg +v+ ++ +e+  + l++l++
  CTQ29642.1 112 ALIDWSLAQLHPGGRLVMTFILQENLHSALAHLRQ 146
                 56788999****************99988888763 PP

>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00026      0.23      35      82 ..      24      71 ..      15      87 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00026
                HHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE--HHHHHHH CS
        DOT1 35 ldkvnlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnasela 82
                l k++l++    +D+G G G v + aal+      + +E   +a +l 
  CTQ29642.1 24 LAKLELHRARHLIDIGAGTGSVSIEAALQNPALRVTAIERQADALRLL 71
                67999************************9999999999776665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1462.08
//
Query:       CTQ29643.1  [L=201]
Description: putative cobalt-precorrin-6Y C(5)-methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-29  103.5   0.2    2.2e-29  102.9   0.2    1.2  1  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.2   1.2e-33   2.2e-29       1     205 [.       1     179 [.       1     186 [. 0.87

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 1.2e-33
  TP_methylase   1 klylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeeleleapmgkekepleeayeeiaeal.aealragkdVvllvsGDPlvygtg 96 
                   +l++VG+Gp +   lT++A++a+++a++++g   r+l+ + d++               ++ +  +++ + l + ++r+g++Vv+l sGDPl+yg+g
    CTQ29643.1   1 MLTVVGMGPAGLQWLTPAAREAIAAAEALVGGS-RHLQQFPDFAG--------------ERFALGADMPALLaWIEARTGRRVVVLASGDPLFYGIG 82 
                   799***************************999.99999976653..............2333355566666699999999**************** PP

  TP_methylase  97 selvealrareagieveviPGvsslqaaaarlgiplteggevlsvllpglakeeereleallangdtlvllkapr.klaelaelLkealyddttpva 192
                    +l+ ++ +++    v+v+PG+s++q ++ar+gi++++   ++s+        ++  ++al+a++  ++ ++++r  + e+a++L+++ ++  + ++
    CTQ29643.1  83 TRLIAHFGRER----VQVLPGISAVQYLCARAGIDMNDMWLTSSHG-------RAVSFDALAAHR-KVAMVTDGRcGPREIAAQLMAR-GKGHRWMV 166
                   *********88....**********************999999999.......778899998844.44444677769***********.99999*** PP

  TP_methylase 193 vveragtedervv 205
                   ++e++ +e+er+ 
    CTQ29643.1 167 IGENLAMENERIH 179
                   ***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1556.17
//
Query:       CTQ29644.1  [L=379]
Description: putative cobalt-precorrin-6A synthase (deacetylating) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-92  307.9   3.6    5.4e-92  307.7   3.6    1.1  1  CbiD      CbiD
  ------ inclusion threshold ------
      0.037   14.0   0.2        0.1   12.6   0.2    1.7  1  DUF3042   Protein of unknown function (DUF3042)


Domain annotation for each model (and alignments):
>> CbiD  CbiD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.7   3.6     6e-96   5.4e-92       1     252 []      17     273 ..      17     273 .. 0.99

  Alignments for each domain:
  == domain 1  score: 307.7 bits;  conditional E-value: 6e-96
        CbiD   1 lrsGyTtGscAaAAakaAllallkgekleeveielpkgekleipiekvalleee..aavikdaGddpDvTngaeivaeve....eeieiegGeGvGrvt 93 
                 lr+GyTtGscA+AAak A+l++++++ +++v+i +p+g +l +++e+ +++ ++  aa++kd+Gdd+D+T+g+ i+a+v+    +ei ++gGeG+G+vt
  CTQ29644.1  17 LRKGYTTGSCATAAAKVAALMVMRQHLIHQVSIVTPSGVTLCLNVESPHVEGQQavAAIRKDGGDDVDATHGMLIFARVTlndsGEISLQGGEGIGTVT 115
                 69**********************************************99988899****************************88************* PP

        CbiD  94 kpgLevevgeaAInpvprkmieenveevleeakegvevtisvpeGeelAkkTlNprlGivgGiSiLGTtGivepmSeeallesireelkvaaaeglkel 192
                 ++g+ +++g++AIn++pr+ ie++v+e++ + ++g++v+i+ peG   A+kT+N+rlGi+gGiSi+GTtGiv+pmSee++++s++ el++++a+gl+++
  CTQ29644.1 116 RKGIGLPTGSPAINRTPRHTIETAVREAIGP-TRGAQVEIFAPEGVLRAQKTYNARLGILGGISIIGTTGIVTPMSEESWKRSLSLELEIKRAAGLERV 213
                 ******************************9.78***************************************************************** PP

        CbiD 193 vlvtGnkgeklakkklglpeealvkvsnfvgealeeaaekgvkkvllvghiGKlvKlagG 252
                 vlv+Gn+ge+++++++g++ + +v++snfvg+++eea++ g+++++l+gh GKl+K+a+G
  CTQ29644.1 214 VLVPGNHGERFVREQMGIDPQMVVTMSNFVGYMIEEAVRLGFRQIVLIGHPGKLIKIAAG 273
                 **********************************************************99 PP

>> DUF3042  Protein of unknown function (DUF3042)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   1.2e-05       0.1       4      31 ..      17      44 ..      15      47 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.2e-05
     DUF3042  4 FlkGflvGvlatiaavagavfvfKkkvi 31
                  kG+ +G+ at+aa ++a++v+++  i
  CTQ29644.1 17 LRKGYTTGSCATAAAKVAALMVMRQHLI 44
                569********************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2721.87
//
Query:       CTQ29645.1  [L=211]
Description: Cobalt-precorrin-8X methylmutase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-66  221.9   0.0    6.6e-66  221.7   0.0    1.0  1  CbiC           Precorrin-8X methylmutase
  ------ inclusion threshold ------
       0.03   14.2   0.0       0.04   13.8   0.0    1.2  1  Fucose_iso_N1  L-fucose isomerase, first N-terminal domain


Domain annotation for each model (and alignments):
>> CbiC  Precorrin-8X methylmutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.7   0.0   7.4e-70   6.6e-66       2     195 ..      10     205 ..       9     206 .. 0.97

  Alignments for each domain:
  == domain 1  score: 221.7 bits;  conditional E-value: 7.4e-70
                 HHHHHHHHHHCHC-TT......S-CHHHHHHHHHHHHHT-CCHHHHEEE-TTHHHHHHHHHHCT-EEEESSHHHHCCS-HHHHHTTC-EEEECTC-HHH CS
        CbiC   2 IeaeSfaiideelgeee.....lseeeeevvrRvihatadfelaellrfspdaveaglealkagapivtDvemvkaGitkkrleklgnevlclladpev 95 
                 Iea+Sf+ii e + e++      s+ +e++++Rvih+tadf++ ++l fspda+ a  eal++ ++++tD++m+ +Gi+k  l+++g e++c+++dp+v
  CTQ29645.1  10 IEAKSFDIISEIIAETRpdyrfASPLHEAIIKRVIHTTADFDWLDILWFSPDALIALSEALSRPCTLYTDTTMALSGINKILLARFGGECRCYISDPRV 108
                 9************99888999999*************************************************************************** PP

                 HHHHHHHTS-HHHHHHHHHHHCTTTCEEEESS-HHHHHHHHHHHHHS..HTSEEEE----SCCHHHHHHHHHCSSS-EEEESSS---HHHHHHHHHHHH CS
        CbiC  96 aelakekgitrsaaamekaaeelegaivviGnAPtALlellelieegkvkpalvigvPvGFvgaaesKealaesevpyitveGrkGGsavAaaivnaLl 194
                  ++a+++g+trs+aa++ a++e  ++++v+GnAPtAL++lle+ e+       v+gvPvGFvgaaesK+al+es++p+i++ GrkGGs+vAaaivnaLl
  CTQ29645.1 109 VREAQSRGMTRSMAAVDIAVQEPGEKVFVFGNAPTALFRLLEHRET---AIGGVVGVPVGFVGAAESKAALSESGLPAIAALGRKGGSNVAAAIVNALL 204
                 *****************************************96444...4588*********************************************9 PP

                 H CS
        CbiC 195 e 195
                 +
  CTQ29645.1 205 Y 205
                 7 PP

>> Fucose_iso_N1  L-fucose isomerase, first N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.5e-06      0.04      43     152 ..      94     201 ..      68     211 .] 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.5e-06
  Fucose_iso_N1  43 adgtevevviadttiggvaeaaacaeklkkenvevtitvtpcWcypsetv...dldpdllkavwgfngterPGaVylaAalaalaqkGlpafriyG 135
                      g+e  + i+d  + ++a+++ +++ +++ ++ v     +++ +++  +    l ++   a+ g+  +   G V+ a ++aal+  Glpa    G
     CTQ29645.1  94 RFGGECRCYISDPRVVREAQSRGMTRSMAAVDIAVQEPGEKVFVFGNAPTalfRLLEHRETAIGGVV-GVPVGFVGAAESKAALSESGLPAIAALG 188
                    46999******************************************98856633444444444444.3347***********************9 PP

  Fucose_iso_N1 136 kdvqdaddeeipedvke 152
                    ++      +++++++ +
     CTQ29645.1 189 RKGG----SNVAAAIVN 201
                    6433....335555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1509.07
//
Query:       CTQ29646.1  [L=319]
Description: Cobalamin biosynthesis protein CobD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-106  355.4   1.4   2.2e-106  355.1   1.4    1.0  1  CobD_Cbib        CobD/Cbib protein


Domain annotation for each model (and alignments):
>> CobD_Cbib  CobD/Cbib protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  355.1   1.4  1.2e-110  2.2e-106       2     276 .]       7     297 ..       6     297 .. 0.95

  Alignments for each domain:
  == domain 1  score: 355.1 bits;  conditional E-value: 1.2e-110
   CobD_Cbib   2 llAlllDlllgdprrllhPvvligklisalekrlrk....akkerlaGvllalllvllallvalllllla..laallglvlealllkltlalrsLleev 94 
                 ++A++lD+++gdp++++hPv++ig+li+  ++++r+     ++ r+ G +++l++++l++ va+++l+la  ++++lg+++e+++++++la+r+L++++
  CTQ29646.1   7 CVAWILDVVIGDPPHWPHPVRWIGRLIAVSQRVVRRvchsDRALRIGGGVMWLVVIGLTWGVAWGVLALAhgIHPWLGWLVEVWMIFTALAGRCLAQSA 105
                 589*****************************99766667778999**********************98765557799******************** PP

   CobD_Cbib  95 rkvakalk.gdleaaReavsmiVgRdtseldeeeiarAavEsvaENlsDgvvaPlfyflllglpgalaykavnTlDsmvGYkneryedfGwaaArlDDl 192
                 ++va++l+ gdl++ R+++s+iVgRdts+l+ ++i rA+vE+vaEN++Dg++aPlf++ll+g+p+a+aykavnTlDsmvGYk+e+y+ +G+++ArlDD+
  CTQ29646.1 106 MAVARPLQaGDLAESRHKLSWIVGRDTSQLQPAQINRAVVETVAENTVDGIIAPLFFLLLGGAPLAMAYKAVNTLDSMVGYKHEKYRAIGMVSARLDDV 204
                 *******65****************************************************************************************** PP

   CobD_Cbib 193 lnyiPARltalllala.........aalriarrdarkhpSpNsgwpeaalAgalgvrLggpnvYlgkleekptlgdkkrpleaedieralrlv 276
                 +n++PARl+ lll la         +alr+ +rd+ +h+SpN +wpea++Agalg+rLggpn Y+g+ +ekp++gd+ r++ ++di+r++rl+
  CTQ29646.1 205 ANFLPARLSWLLLSLAavlcredgtRALRTGWRDRYQHSSPNCAWPEATVAGALGIRLGGPNDYFGQRVEKPWIGDAVRDIAVDDISRTIRLM 297
                 ***************866666666677****************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2492.64
//
Query:       CTQ29647.1  [L=458]
Description: Cobyrinic acid A,C-diamide synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-38  130.0   0.0    1.1e-37  129.6   0.0    1.1  1  GATase_3  CobB/CobQ-like glutamine amidotransferase domain
    1.3e-22   80.2   0.0    1.8e-22   79.7   0.0    1.2  1  CbiA      CobQ/CobB/MinD/ParA nucleotide binding domain
    5.9e-18   65.4   0.2    8.9e-11   42.0   0.0    2.2  2  AAA_26    AAA domain
     0.0021   17.3   0.0     0.0057   16.0   0.0    1.8  1  DUF1611   Domain of unknown function (DUF1611_C) P-loop domai
  ------ inclusion threshold ------
      0.033   14.1   0.0      0.084   12.8   0.0    1.7  2  MobB      Molybdopterin guanine dinucleotide synthesis protei
      0.041   13.6   0.1        2.8    7.6   0.0    2.4  2  PRK       Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.6   0.0   3.5e-41   1.1e-37       2     194 ..     252     443 ..     251     445 .. 0.91

  Alignments for each domain:
  == domain 1  score: 129.6 bits;  conditional E-value: 3.5e-41
    GATase_3   2 iavirlpaisnyt..dldpLeaepevrvrfvplkdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmLGeeiedpegv 98 
                  a++ ++a+++y+  +l +L++ + + vrf+pl+d++l++ +++++l+Gg+++++++ l++++++  ++++a+++g+ ++++CGGl++LG+++e  +g+
  CTQ29647.1 252 LALADDEAFNFYYpdNLALLARCGVKMVRFSPLRDRQLPA-CQMIWLGGGYPELHAAGLSANHEMLTQLRAAHRRGVAIYAECGGLMYLGTTLEVTSGE 349
                 57899*********************************76.****************************************************999999 PP

    GATase_3  99 egeageveglglLdietefekekltgqvegevel........aaegeevkGyEiHsGrtilkekakpllkvkv.ggnng.ekdGavkksedgnvlGtYl 187
                      ++ + ++++ + +++  +lt    g++e+        aa ge ++G+E+H++  + + +a  +++ ++ g++ +  + G+ +    g+ +++Yl
  CTQ29647.1 350 -----RYTMADIIPGHSRMGT-RLT--RFGYCEAqaqqqtllAAPGEWLRGHEFHYSDFSPATPAVLACRKQRdGKTLQqWQGGWQS----GSAFASYL 436
                 .....****************.999..7888877888899887788***********999999999999997765555545555554....6******* PP

    GATase_3 188 Hglfdnr 194
                 H++f++r
  CTQ29647.1 437 HVHFAQR 443
                 ****987 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   6.1e-26   1.8e-22       2     126 ..       8     193 ..       7     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 6.1e-26
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH.............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................. RF
        CbiA   2 aiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep.............................................. 54 
                 ++a+t +G GKTt++++L+ +l++rg rV++ +++p+   +a  ++    i+                                               
  CTQ29647.1   8 ILAGTGSGCGKTTVTLGLLSLLQQRGMRVQPCKVGPDYLDTA-WHTAISGIASrnldsfmlpapilnalfteqlqqadiaviegvmglydgygtdpnyc 105
                 689**********************************99999.666666666677889***************************************** PP

                 .................CCHCCCHHHHHHCHCHHHH.....EEEEEEEEESS...-TTCHHHHHHHHHHCTS-EEEEEE--CCHCCCCHHTS CS
                 .................xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .................dlkrllellealgkkkall...lkiagvvlnrvdgeneetllkealeelkqrygvpvlgviprdeavaeaparge 126
                                  d k ++ +++a + +++++   l+iagv++nrv+++++++llk+a+e+++   +vpvlg +pr+e+v  +p+r++
  CTQ29647.1 106 ssaamakqlgcpvilliDGKAVSTSIAATVMGFQHFdpaLDIAGVIVNRVNSDAHFQLLKSAIERYC---RVPVLGYVPRVEGV-ALPERHL 193
                 **********************************99*******************************...9************9.6787775 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1     6e-08   0.00018       1      33 [.       5      37 ..       5      42 .. 0.93
   2 !   42.0   0.0     3e-14   8.9e-11      93     192 ..      77     184 ..      51     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6e-08
      AAA_26  1 rtifvtgtdtgvGKTvvslgLvralkrkgvkvg 33
                r+++++gt+ g GKT+v+lgL++ l+++g++v+
  CTQ29647.1  5 RAFILAGTGSGCGKTTVTLGLLSLLQQRGMRVQ 37
                57899*************************996 PP

  == domain 2  score: 42.0 bits;  conditional E-value: 3e-14
      AAA_26  93 kelekdadivvVEGagglgvp..itee.llnadiaknlgapvilVarggl..gtinqllltiealrqknvrvlGvilNkvrnpenvetlekksg....i 182
                  e  ++adi v+EG+ gl ++  +  + ++ a +ak+lg+pvil++ g+    +i+++++  +++    + ++Gvi+N+v++++  + l+++++    +
  CTQ29647.1  77 TEQLQQADIAVIEGVMGLYDGygTDPNyCSSAAMAKQLGCPVILLIDGKAvsTSIAATVMGFQHFDP-ALDIAGVIVNRVNSDAHFQLLKSAIErycrV 174
                 4556799***********97733444579******************9774256***********99.7**************9888888777766669 PP

      AAA_26 183 pvlGvvPylp 192
                 pvlG vP  +
  CTQ29647.1 175 PVLGYVPRVE 184
                 *******865 PP

>> DUF1611  Domain of unknown function (DUF1611_C) P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.9e-06    0.0057      17     100 ..       9      95 ..       2     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.9e-06
     DUF1611  17 vvGTdcavGKrttaleleealeerGlkaafvaTgq....tgiliagegvvldavvvdfvaGaveglvkkaaeeeepdlilveGQgsLt 100
                   GT++ +GK t +l l   l++rG++++ +  g+    t++ +a +g++   + +   ++ + ++  + +  +++d+ ++eG  +L+
  CTQ29647.1   9 LAGTGSGCGKTTVTLGLLSLLQQRGMRVQPCKVGPdyldTAWHTAISGIASRNLDSFMLPAPILNALFTEQL-QQADIAVIEGVMGLY 95 
                 57*******************************965555999999999999999999999999999888886.666999999988777 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.8e-05     0.084       5      34 ..      10      40 ..       6      50 .. 0.85
   2 ?   -3.1   0.0       2.2   6.6e+03      85      98 ..      77      90 ..      70      91 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.8e-05
        MobB  5 vgk.sgsGKTtLleklipelkarglrvgtiK 34
                +g+ sg+GKTt    l++ l++rg+rv   K
  CTQ29647.1 10 AGTgSGCGKTTVTLGLLSLLQQRGMRVQPCK 40
                45449**********************8766 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.2
        MobB 85 larlsevDlvlvEG 98
                +++l+++D+ ++EG
  CTQ29647.1 77 TEQLQQADIAVIEG 90
                46678999999999 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00094       2.8       5      28 ..      11      34 ..       7      51 .. 0.83
   2 ?    3.3   0.0      0.02        59     105     123 ..      78      96 ..      71      98 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00094
         PRK  5 agsSGaGkttvarklekifgrekv 28
                +  SG+Gkttv+  l +++++ ++
  CTQ29647.1 11 GTGSGCGKTTVTLGLLSLLQQRGM 34
                467**********99999987665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.02
         PRK 105 eliegadvlviEGlhalyd 123
                 e +++ad+ viEG+ +lyd
  CTQ29647.1  78 EQLQQADIAVIEGVMGLYD 96 
                 67899*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3600.42
//
Query:       CTQ29648.1  [L=98]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 869.46
//
Query:       CTQ29649.1  [L=303]
Description: Regulatory protein PocR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-43  148.6   0.1    3.5e-43  147.2   0.0    1.7  2  PocR      Sensory domain found in PocR
    3.9e-26   90.6   0.5    8.7e-12   44.8   0.4    2.6  2  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara
      1e-20   73.8   0.1    1.7e-20   73.1   0.1    1.4  1  HTH_18    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> PocR  Sensory domain found in PocR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.2   0.0   5.8e-47   3.5e-43       3     160 ..       7     164 ..       5     166 .. 0.97
   2 ?   -1.7   0.0      0.37   2.2e+03      38      52 ..     271     285 ..     257     300 .. 0.60

  Alignments for each domain:
  == domain 1  score: 147.2 bits;  conditional E-value: 5.8e-47
        PocR   3 idleklqklldsfseatglaivivdtdgepltepsnftdfCklvrstpegrkrCrksdarggeeavksgkpyiykChaGLvdvavPIivegkllGaiil 101
                 ++ e ++k+ ++f++at la+v+v+++g++++e  nft+fC+l+r++pe++ rCr sd+ gg ea k+++ +iy+ChaGL+d+++P++++g+l+G++++
  CTQ29649.1   7 LNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQLMRQHPEHSGRCRMSDRCGGLEASKKDQLCIYRCHAGLTDFSIPLVIAGHLVGFVLC 105
                 678999********************************************************************************************* PP

        PocR 102 Gqvllee.pdeeefreqakelgldeeellealekvpvvseeklraiaelleilanylves 160
                 Gqv+l++ ++  ++ ++ ++++ d+ +l +a+++vp ++++++ a+a+ll+ ++++++++
  CTQ29649.1 106 GQVRLSNdVELVDILNVDDRWQ-DDPALVQAFRDVPEMDYSRVIASADLLKLIVENCLKK 164
                 *******8889***********.999****************************998876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.37
        PocR  38 nftdfCklvrstpeg 52 
                 + + fCk++r+t + 
  CTQ29649.1 271 QTSYFCKVFRQTYQV 285
                 335577777776544 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   4.4e-15   2.6e-11       1      42 []     201     242 ..     201     242 .. 0.95
   2 !   44.8   0.4   1.5e-15   8.7e-12       2      42 .]     254     292 ..     252     292 .. 0.94

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 4.4e-15
                 HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 +  +ls++l++ed+A+++++S++yFs+lFkk+ G+ ++++ +
  CTQ29649.1 201 IDAHLSDELRLEDVAAHVYLSPYYFSKLFKKYQGIGFNAWVN 242
                 6789***********************************975 PP

  == domain 2  score: 44.8 bits;  conditional E-value: 1.5e-15
                 HCCCSCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   2 renlstnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                     +++++i++iA +lgf   syF+++F++++++tP+++r+
  CTQ29649.1 254 C---HSDWSIASIARNLGFsQTSYFCKVFRQTYQVTPQAFRQ 292
                 4...778************99*******************97 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.1   2.8e-24   1.7e-20       1      81 []     214     293 ..     214     293 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 2.8e-24
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrrr 81 
                 +aa++ +s+ ++++lfk++ g+ + +++++ R+  A++lL + ++ s+a iA  lGFs +s+F + fr+++++tP+++r++
  CTQ29649.1 214 VAAHVYLSPYYFSKLFKKYQGIGFNAWVNQQRMASAKELLCH-SDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQAFRQQ 293
                 5999************************************86.************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2593.12
//
Query:       CTQ29650.1  [L=269]
Description: glycerol facilitator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-62  211.0  13.3    2.2e-62  210.7  13.3    1.0  1  MIP       Major intrinsic protein
  ------ inclusion threshold ------
       0.36   11.0   5.3       0.19   11.9   2.2    2.3  2  DUF4040   Domain of unknown function (DUF4040)


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.7  13.3   2.5e-66   2.2e-62       9     227 .]       7     249 ..       2     249 .. 0.97

  Alignments for each domain:
  == domain 1  score: 210.7 bits;  conditional E-value: 2.5e-66
                 HHHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHH CS
         MIP   9 ravlAEflatlllvfigvgsalnvkkkvsslaslvsvtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllGaivaa 107
                  +++AEfl+t l++f+g+ +  ++k + +s      ++l ++ + +gl++  +vyl+agiSG+HlNPavT+al+++++++ ++++ YivaQ++Ga+ +a
  CTQ29650.1   7 AQCIAEFLGTGLFLFFGICCLSALKLTGAS------LGLWEICIIWGLGISLAVYLTAGISGGHLNPAVTVALWLFACFPGRKVVPYIVAQVAGAFGGA 99 
                 589****************98888888766......678999999****************************************************** PP

                 HHHHHHCHHH.................HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHHHHHHHST CS
         MIP 108 allklltkgl.................esraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilvgipltGa 189
                  l  +l++ l                  + a+ f+++++p+ls ++a  vE+++t +L+ +++altdd + v +g lapl+ig+lva+i ++++pltG+
  CTQ29650.1 100 VLAWILYSTLftqfetvhhmvrgslesLQLASIFSTYPAPELSIWHAALVEVVITSMLMGMIMALTDDGNGVPKGPLAPLLIGILVAVIGASTGPLTGF 198
                 *999999999***************9999********************************************************************** PP

                 -SSHHHHHHHHHHHTH.............STTTTHHHHHHHHHHHHHHHHH CS
         MIP 190 amNpArslgpavvlnk.............fedhwvylvGPliGailgalvY 227
                 amNpAr++gp+++++              + ++ v++++Pl+Ga lga +Y
  CTQ29650.1 199 AMNPARDFGPKLFTWFagwgniamtggrnIPYFIVPIIAPLLGACLGAAIY 249
                 ***************99*******************************999 PP

>> DUF4040  Domain of unknown function (DUF4040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.3   1.1e+04      45      57 ..      11      22 ..       9      30 .. 0.54
   2 ?   11.9   2.2   2.1e-05      0.19       3      63 ..     101     162 ..      99     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.3
     DUF4040 45 Tqaavveglttvl 57
                +++ +++gl + +
  CTQ29650.1 11 AEF-LGTGLFLFF 22
                555.555555444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.1e-05
     DUF4040   3 lvlaalaavlar.drlaavillgvvGllvallfvllgAPDvAlTqaavveglttvllllalr 63 
                 l+++++ +++++ + ++ ++  ++ +l +a +f ++ AP + +  aa+ve+++t +l+  + 
  CTQ29650.1 101 LAWILYSTLFTQfETVHHMVRGSLESLQLASIFSTYPAPELSIWHAALVEVVITSMLMGMIM 162
                 66777777777778888888888999****************************99997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2343.69
//
Query:       CTQ29651.1  [L=94]
Description: putative carboxysome-like ethanolaminosome structural protein, ethanolamine utilization protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-28   99.0   7.4    1.3e-28   98.8   7.4    1.0  1  BMC       BMC domain


Domain annotation for each model (and alignments):
>> BMC  BMC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   7.4   7.3e-33   1.3e-28       1      74 []       5      80 ..       5      80 .. 0.98

  Alignments for each domain:
  == domain 1  score: 98.8 bits;  conditional E-value: 7.3e-33
                EEEEEEEESHHHHHHHHHHHHHHSSEEEEEEEECTTTCEEEEEEESHHHHHHHHHHHHHHH..CHHEEEEEEESSE CS
         BMC  1 AlGlietrglaaaieaaDaalKaAnVelvgvekvgggkvtviitGdvaaVkaAveagveaa..kgelvsshviprp 74
                AlG++et+gl+aaieaaDa++K+AnV lvg+e++g+g+vtvi++Gdv+aVkaA +ag++aa  +ge+ + hviprp
  CTQ29651.1  5 ALGMVETKGLTAAIEAADAMVKSANVLLVGYERIGSGLVTVIVRGDVGAVKAATDAGAAAArhVGEVKAVHVIPRP 80
                9************************************************************866***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 853.93
//
Query:       CTQ29652.1  [L=270]
Description: Propanediol utilization protein PduB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-26   91.4  12.2    5.2e-14   52.0   4.1    2.6  3  BMC       BMC domain


Domain annotation for each model (and alignments):
>> BMC  BMC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.37   6.6e+03      48      54 ..      62      68 ..      39      74 .. 0.62
   2 !   44.6   0.3     6e-16   1.1e-11       1      61 [.      80     148 ..      80     160 .. 0.88
   3 !   52.0   4.1   2.9e-18   5.2e-14       1      67 [.     186     256 ..     186     260 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.37
                HHHHHHH CS
         BMC 48 aaVkaAv 54
                a+V aA+
  CTQ29652.1 62 ANVDAAL 68
                3333333 PP

  == domain 2  score: 44.6 bits;  conditional E-value: 6e-16
                 EEEEEEEESHHHH.HHHHHHHHHHSSEEEEEEEECTTT......CEEEEEEE.SHHHHHHHHHHHHHHH CS
         BMC   1 AlGlietrglaaa.ieaaDaalKaAnVelvgvekvggg......kvtviitG.dvaaVkaAveagveaa 61 
                 ++G++  r++a   i+aaD+a+Ka+n e+v++e++++        +++++ G dv++Vk+++e++++++
  CTQ29652.1  80 SIGILGARTGAGPhIMAADEAVKATNTEVVSIELPRDTkggaghGSLIVLGGnDVSDVKRGIEVALKEL 148
                 79999999999888**********************965778777*********************998 PP

  == domain 3  score: 52.0 bits;  conditional E-value: 2.9e-18
                 EEEEEEEESHHHHHHHHHHHHHHSSEEEEEEEECTTT.....CEEEEEEESHHHHHHHHHHHHHHHCHHEEE CS
         BMC   1 AlGlietrglaaaieaaDaalKaAnVelvgvekvggg.....kvtviitGdvaaVkaAveagveaakgelvs 67 
                 A G+i  +++++++ +aD+alK+AnVe+v ++++  g     + +++i+Gd +aV++Av  ++e + +++++
  CTQ29652.1 186 ACGIIVGAPASVGVLMADTALKSANVEVVAYSSPAHGtsfsnEAILVISGDSGAVRQAVISAREIG-KTVLA 256
                 78**********************************9999999*********************98.55655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 2131.89
//
Query:       CTQ29653.1  [L=554]
Description: Propanediol dehydratase large subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
          0 1030.1   0.2          0 1029.9   0.2    1.0  1  Dehydratase_LU  Dehydratase large subunit
  ------ inclusion threshold ------
      0.078   13.1   0.1       0.13   12.4   0.1    1.3  1  Keratin_2_head  Keratin type II head


Domain annotation for each model (and alignments):
>> Dehydratase_LU  Dehydratase large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1029.9   0.2         0         0       1     551 [.       1     551 [.       1     552 [. 1.00

  Alignments for each domain:
  == domain 1  score: 1029.9 bits;  conditional E-value: 0
  Dehydratase_LU   1 krskrfevlekrpvnkdgfvkewpevGlvamespndPkpsikiengkvveldgkkredfdlidefiadyaidlevaeeamaldslelarmlvdin 95 
                     +rskrfe+l+krpvn+dgfvkew+e+G++amespndPkpsi+i ng v+eldgk  e+fdlid+fia+y+i+l++aee+ma+ds++la+ml+d+n
      CTQ29653.1   1 MRSKRFEALAKRPVNQDGFVKEWIEEGFIAMESPNDPKPSIRIVNGAVTELDGKPVEQFDLIDHFIARYGINLARAEEVMAMDSVKLANMLCDPN 95 
                     79********************************************************************************************* PP

  Dehydratase_LU  96 vsreevvkltkgltpaklvevvsklnvvelmmalqkmrarktpanqahvtnlkdnpvqiaadaaeaalrGfaelettvgvvryaplnalallvGs 190
                     v+r+++v +t+++tpak+vevvs++nvve+mma+qkmrar+tp++qahvtn+kdnpvqiaadaae+a+rGf+e+ettv+v+ryap+na+allvGs
      CTQ29653.1  96 VKRSDIVPFTTAMTPAKIVEVVSHMNVVEMMMAMQKMRARRTPSQQAHVTNIKDNPVQIAADAAEGAWRGFDEQETTVAVARYAPFNAIALLVGS 190
                     *********************************************************************************************** PP

  Dehydratase_LU 191 qvgrpGvltqcaveeatelelgmrgltayaetvsvyGtekvfvdGddtPwskafLasayasrGlkmrftsgtGsevqmGaaegksmlyLearCil 285
                     qvgrpGvltqc++eeatel+lgm g+t+yaet+svyGte vf+dGddtPwsk+fLas+yasrGlkmrftsg+GsevqmG+aegksmlyLearCi+
      CTQ29653.1 191 QVGRPGVLTQCSLEEATELKLGMLGHTCYAETISVYGTEPVFTDGDDTPWSKGFLASSYASRGLKMRFTSGSGSEVQMGYAEGKSMLYLEARCIY 285
                     *********************************************************************************************** PP

  Dehydratase_LU 286 vtkgaGvqGlqnGsvscigvpaavPsGiravlaenliaalldlevasgndqtfshsdlrrtartllqllpGtdfifsGyssvpnydnmfagsnfd 380
                     +tk+aGvqGlqnGsvscigvp+avPsGiravlaenli+++ldle+as+ndqtf+hsd+rrtar+l+q+lpGtdfi+sGys+vpnydnmfagsn d
      CTQ29653.1 286 ITKAAGVQGLQNGSVSCIGVPSAVPSGIRAVLAENLICSALDLECASSNDQTFTHSDMRRTARLLMQFLPGTDFISSGYSAVPNYDNMFAGSNED 380
                     *********************************************************************************************** PP

  Dehydratase_LU 381 aedlddylvlqrdlkvdgglrpvkeeeviavrnkaaralqavfeelglpeitdeeveaatyaegskdlperdvvedlkaaeellergitgldivk 475
                     aed+ddy+v+qrdlkvdgglrpv+ee+via+rnkaaralqavf+ +glp+itdeeveaatya+gskd+per++ved+k a+e+++++ +gl++vk
      CTQ29653.1 381 AEDFDDYNVIQRDLKVDGGLRPVREEDVIAIRNKAARALQAVFAGMGLPPITDEEVEAATYAHGSKDMPERNIVEDIKFAQEIINKNRNGLEVVK 475
                     *********************************************************************************************** PP

  Dehydratase_LU 476 aLakkgfedvaenilnllkqrvsGdylqtsaildedfnvlsavndkndyaGpgtGyrlseerweeiknirqaldpe 551
                     aLak gf dva+++ln++k++++Gdyl+tsai+  + +vlsavnd ndyaGp+tGyrl+ erweeikni+ aldp+
      CTQ29653.1 476 ALAKGGFPDVAQDMLNIQKAKLTGDYLHTSAIIVGEGQVLSAVNDVNDYAGPATGYRLQGERWEEIKNIPGALDPN 551
                     *************************************************************************997 PP

>> Keratin_2_head  Keratin type II head
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.4e-05      0.13      73     148 ..     248     324 ..     222     331 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
  Keratin_2_head  73 fgfgggggggfglGfggGvglgfgagggvGggfGggggl..vGgggfGg.ggfGggGfGgpvcppgGIqeVtinqsLLq 148
                     +  ++g +++f +G+g+ v++g+  g+++   +  + ++  + ++g+ g  +  +  +G+p+++p+GI++V  ++ + +
      CTQ29653.1 248 SYASRGLKMRFTSGSGSEVQMGYAEGKSML--YLEARCIyiTKAAGVQGlQNGSVSCIGVPSAVPSGIRAVLAENLICS 324
                     445678888999999999999998887776..2233333112333333322333368889**********987665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4160.73
//
Query:       CTQ29654.1  [L=229]
Description: Propanediol dehydratase medium subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-36  122.6   0.2    4.5e-35  119.9   0.0    2.0  2  Dehydratase_MU  Dehydratase medium subunit
  ------ inclusion threshold ------
       0.15   12.4   0.1       0.47   10.8   0.0    1.8  2  TraC            TraC-like protein


Domain annotation for each model (and alignments):
>> Dehydratase_MU  Dehydratase medium subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.055     5e+02      27      59 ..      13      45 ..       2      55 .. 0.84
   2 !  119.9   0.0     5e-39   4.5e-35       2     108 ..      74     186 ..      73     187 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.055
  Dehydratase_MU 27 egvpyevvveetsdvaelAhqAaklSrlgvGig 59
                    e+v  e++  +++ v++ A  A+ +S   v+++
      CTQ29654.1 13 EEVLSEMKSGADKPVSFSAPAASVASAAPVAVA 45
                    668888999999999999999999999888876 PP

  == domain 2  score: 119.9 bits;  conditional E-value: 5e-39
  Dehydratase_MU   2 Paivilvskeie....eevlrevlaGiEEegvpyevv.veetsdvaelAhqAaklSrlgvGigiqskgtvvihqkklpeesplellsq.pladke 90 
                     Pa++++++ +i     +++lrev+aGiEEeg++++v  + ++sdva++A +  +lS++g++igiqskgt+vihq+ lp++s+lel++q pl + e
      CTQ29654.1  74 PAFGLAQTANIVgiphKNILREVIAGIEEEGIKARVIrCFKSSDVAFVAVEGNRLSGSGISIGIQSKGTTVIHQRGLPPLSNLELFPQaPLLTLE 168
                     9999999999999999*********************9********************************************************* PP

  Dehydratase_MU  91 tlRalGanAArlvkgepf 108
                     t+R++G+nAAr++k+e++
      CTQ29654.1 169 TYRQIGKNAARYAKRESP 186
                     ***************987 PP

>> TraC  TraC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.3e-05      0.47      41      80 ..       1      40 [.       1      44 [. 0.94
   2 ?   -2.4   0.0       0.7   6.3e+03       4      23 ..     189     208 ..     187     212 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.3e-05
        TraC 41 ieieeeeldaifeeiaaRFRkkekksaegsaasaarasga 80
                +ei+e+ l +i+ee+ +  + +++k  + sa++a++as+a
  CTQ29654.1  1 MEINETLLRQIIEEVLSEMKSGADKPVSFSAPAASVASAA 40
                9******************************999999876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.7
        TraC   4 isdirdeiakLqerlkqaev 23 
                 +  ++d++a+ + + k+a+ 
  CTQ29654.1 189 VPTLNDQMARPKYQAKSAIL 208
                 56788999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1719.63
//
Query:       CTQ29655.1  [L=174]
Description: Propanediol dehydratase small subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-60  202.5   1.3    2.7e-60  202.3   1.3    1.1  1  Dehydratase_SU  Dehydratase small subunit
  ------ inclusion threshold ------
       0.07   13.0   0.1       0.14   12.0   0.1    1.5  1  NIR_SIR_ferr    Nitrite/Sulfite reductase ferredoxin-like hal
        1.2    9.6   4.2         17    5.8   0.3    2.6  2  kleA_kleC       Uncharacterized KorC regulated protein A


Domain annotation for each model (and alignments):
>> Dehydratase_SU  Dehydratase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.3   1.3   4.4e-64   2.7e-60       3     133 .]      41     171 ..      39     171 .. 0.99

  Alignments for each domain:
  == domain 1  score: 202.3 bits;  conditional E-value: 4.4e-64
  Dehydratase_SU   3 aedyPlaekrpelvktktgksldditlekvlsgkvkaedlritpetLelqaqiAesagrkqlaknlrRaaElvkvpderileiYnalrPyrstke 97 
                     ++dyPla+++pe+vkt+t+k+ldd+tle+vls++v+a+d+ritpetL++qa iA++agr++la+n++RaaEl++vpd+rileiYnalrPyrst++
      CTQ29655.1  41 VSDYPLATRHPEWVKTATNKTLDDLTLENVLSDRVTAQDMRITPETLRMQAAIAQDAGRDRLAMNFERAAELTAVPDDRILEIYNALRPYRSTQA 135
                     78********************************************************************************************* PP

  Dehydratase_SU  98 ellaiadeleekYeakvnaalvreaaevYekrkklk 133
                     ellaiad+le++Y+a+ +aa+vreaa +Y +rkklk
      CTQ29655.1 136 ELLAIADDLEHRYQARLCAAFVREAAGLYIERKKLK 171
                     **********************************97 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.3e-05      0.14      20      68 ..      81     129 ..      74     130 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
  NIR_SIR_ferr  20 ritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLae 68 
                   rit+e+lr  a+ia++ g+ ++ +  +   +l+ vp++++ ei+++L+ 
    CTQ29655.1  81 RITPETLRMQAAIAQDAGRDRLAMNFERAAELTAVPDDRILEIYNALRP 129
                   8********************************************9985 PP

>> kleA_kleC  Uncharacterized KorC regulated protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.4     0.006        36      21      37 ..      97     113 ..      89     119 .. 0.89
   2 ?    5.8   0.3    0.0029        17      16      52 ..     124     161 ..     117     171 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.006
   kleA_kleC  21 arRdkiAaklaeAeeLv 37 
                 a Rd++A   ++A+eL+
  CTQ29655.1  97 AGRDRLAMNFERAAELT 113
                 78**************7 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0029
   kleA_kleC  16 atdlvarRdkiAaklaeAeeLvrqa.eeLRakvyeesa 52 
                  + l+  R   A++la A++L+++  ++L a   +e a
  CTQ29655.1 124 YNALRPYRSTQAELLAIADDLEHRYqARLCAAFVREAA 161
                 56677889999***********9851456555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1411.36
//
Query:       CTQ29656.1  [L=610]
Description: Diol dehydratase-reactivating factor alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.9e-161  534.5   1.5   7.9e-161  534.5   1.5    2.2  2  DDR             Diol dehydratase reactivase ATPase-like domai
    8.6e-77  256.7   2.2    2.1e-76  255.4   2.2    1.7  1  DDR_swiveling   DD-reactivating factor swiveling domain
    3.8e-05   24.0   0.8       0.39   11.2   0.7    2.8  2  FtsA            Cell division protein FtsA
  ------ inclusion threshold ------
      0.018   14.5   0.6      0.074   12.5   0.1    2.1  2  Ppx-GppA        Ppx/GppA phosphatase family
      0.042   14.0   0.1       0.12   12.6   0.1    1.8  1  Spore_YtfJ      Sporulation protein YtfJ (Spore_YtfJ)
      0.068   13.2   0.1       0.17   11.9   0.1    1.7  1  Apocytochr_F_C  Apocytochrome F, C-terminal


Domain annotation for each model (and alignments):
>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.7     0.011        34      21      89 ..      27      99 ..       7     105 .. 0.72
   2 !  534.5   1.5  2.6e-164  7.9e-161       1     327 [.     275     601 ..     275     602 .. 1.00

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.011
         DDR 21 edirge...agtnvggmlervrevmaeltek.kvedikikDllavdtlvpqkvkgglAgefslekavglaamv 89
                 +ir +   + t ++g l +v    ++lt+  k + i++ D+  +     + v g +A e+ +e+ ++ ++m+
  CTQ29656.1 27 LNIRHSalaETTGIKGTLRNVFGIQEALTQAaKAAGIQLSDISLIRINEATPVIGDVAMETITETIITESTMI 99
                455554111456677777777777778877625678*********9999999*************99988887 PP

  == domain 2  score: 534.5 bits;  conditional E-value: 2.6e-164
         DDR   1 vdvdegaekimeaveevekiedirgeagtnvggmlervrevmaeltekkvedikikDllavdtlvpqkvkgglAgefslekavglaamvktdklqmqki 99 
                 vdv++gae+im+av+ + k++++ geagtn+ggmle+vr++maelt+k+ ++i+i+Dllavdt vp++v+gglAgefsle+avg+a+mvk+d+lqm  i
  CTQ29656.1 275 VDVAAGAEAIMKAVDGCGKLDNVAGEAGTNIGGMLEHVRQTMAELTNKPAQEIRIQDLLAVDTAVPVSVTGGLAGEFSLEQAVGIASMVKSDRLQMALI 373
                 89************************************************************************************************* PP

         DDR 100 aeeleeelgvkvevggvEaemAilGalttPGtekplailDlGaGstDaalieeegevkavhlAGAGemvtlliaseLgledrelaEdiKkyplakvesl 198
                 a+e+e++l+++v+vgg+Eae+AilGalttPGt++plailDlGaGstDa++i+++ge++a+hlAGAG+mvt++ia+eLgledr+laE+iKkyplakvesl
  CTQ29656.1 374 AREIEHKLQIAVQVGGAEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINAQGEISATHLAGAGDMVTMIIARELGLEDRYLAEEIKKYPLAKVESL 472
                 *************************************************************************************************** PP

         DDR 199 fhireEdgtvqFfdkpldpevfarvvllkedelvpleedlslekirsvRreaKekvfvtnalRalkkvsptgnirdidfvvlvGgsalDfEipelvtda 297
                 fh+r+Edg+vqFf ++l+p vfarv+++k+delvpl+ dl+lek+r++Rr+aK++vfvtnalRal++vsptgnirdi+fvvlvGgs+lDfEip+lvtda
  CTQ29656.1 473 FHLRHEDGSVQFFPSALPPAVFARVCVVKPDELVPLPGDLPLEKVRAIRRSAKSRVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEIPQLVTDA 571
                 *************************************************************************************************** PP

         DDR 298 laeygivaGrgnirgveGpRnAvAtGLvls 327
                 la+y++vaGrgnirg eGpRnAvA+GL+l+
  CTQ29656.1 572 LAHYRLVAGRGNIRGSEGPRNAVASGLLLA 601
                 ***************************987 PP

>> DDR_swiveling  DD-reactivating factor swiveling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4   2.2   7.2e-80   2.1e-76       1     162 []      93     254 ..      93     254 .. 1.00

  Alignments for each domain:
  == domain 1  score: 255.4 bits;  conditional E-value: 7.2e-80
  DDR_swiveling   1 itestmiGhnPstPgGlGlgvGetvkleelekakkeeevivvvpkevdfeeaaklinealekgvkikgailqkddgvlvenrlekkiPivdevsli 96 
                    itestmiGhnP+tPgG+GlgvG+t++ e l ++++++++i+vv++ +df+++a+++n+a++ g++i+g+ilq+ddgvlv+nrl++ +P++dev++i
     CTQ29656.1  93 ITESTMIGHNPKTPGGVGLGVGITITPEALLSCSADTPYILVVSSAFDFADVAAMVNAATAAGYQITGIILQQDDGVLVNNRLQQPLPVIDEVQHI 188
                    8*********************************************************************************************** PP

  DDR_swiveling  97 dkvPlgmlaavevaekGkvietlsnpygiatlfelsaeetkkivPvaraliGnrsavviktPkGdv 162
                    d++Plgmlaaveva +Gk+ietlsnpygiat+f+l+aeetk+ivP+araliGnrsavv+ktP+Gdv
     CTQ29656.1 189 DRIPLGMLAAVEVALPGKIIETLSNPYGIATVFDLNAEETKNIVPMARALIGNRSAVVVKTPSGDV 254
                    *****************************************************************8 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.7   0.00013      0.39       1      75 [.       5      85 ..       5     336 .. 0.68
   2 !   10.5   0.0   0.00021      0.62       1      58 [.     410     467 ..     410     597 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
                EEEEE-SSSEEEEEEETTEEEEEEEES-......-HHHHHHH..HHHHHT--HHHHHHHHHHH--S--......EEEEEHHHHH......GGGGS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxx......xxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvhlrvigv......ggngitkd..iakalrtaveeAerikikyGsala......ekeigrkels......ggsal 75
                a++DiG+++t+va+a  +      v+++      +  gi+     + ++++a+ +A + +   G +l+               +      g  a+
  CTQ29656.1  5 AGIDIGNSSTEVALATVDD---AGVLNIrhsalaETTGIKGTlrNVFGIQEALTQAAKAA---GIQLSdislirI--------NeatpviGDVAM 85
                79***************74...44444433344666667666334555677788888887...655554333330........144444422222 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00021
                 EEEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHHHHHHHT--.HHHHHHHHHHH--S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
        FtsA   1 alvDiGagktdvavaedgalvhlrvigvggngitkdiakalrta.veeAerikikyGsa 58 
                 a++D+Gag+td+++++ ++ +  + +  +g+ +t  ia+ l+      Ae+ik ky  a
  CTQ29656.1 410 AILDLGAGSTDASIINAQGEISATHLAGAGDMVTMIIARELGLEdRYLAEEIK-KYPLA 467
                 78**************98877777777799********999865377899999.43333 PP

>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.26   7.7e+02     117     130 ..       7      20 ..       4      75 .. 0.88
   2 ?   12.5   0.1   2.5e-05     0.074      86     150 ..     381     444 ..     370     473 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.26
                 EEEETTEEEEEEEE CS
    Ppx-GppA 117 iDiGGGStElvlge 130
                 iDiG  StE++l++
  CTQ29656.1   7 IDIGNSSTEVALAT 20 
                 89999999999875 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2.5e-05
                 S-EEEE-HHHHHHHHHHHHHHHT---SSEEEEEEETTEEEEEEEETTEEEEEEEES--CCHHHHH CS
    Ppx-GppA  86 lkveiisgeeEarliylgvvssllekgrglviDiGGGStElvlgeekevsklvSlplGavrlter 150
                 l++ +  g  Ea+ ++lg+  +   + +  ++D+G GSt+ +++ +++ + +     Ga+ + ++
  CTQ29656.1 381 LQIAVQVGGAEAEAAILGALTTPGTTRPLAILDLGAGSTDASII-NAQGEISATHLAGAGDMVTM 444
                 5566666999*************99*****************99.66666666666666666555 PP

>> Spore_YtfJ  Sporulation protein YtfJ (Spore_YtfJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.9e-05      0.12      31      71 ..     103     144 ..      58     152 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.9e-05
  Spore_YtfJ  31 ekepfgggsgaGvsitPvAfLvikkgevkllpvkk.ssldkl 71 
                  k+p g g g+G++itP A+L ++ ++  +l v++  ++ ++
  CTQ29656.1 103 PKTPGGVGLGVGITITPEALLSCSADTPYILVVSSaFDFADV 144
                 78999*****************99999888888666444444 PP

>> Apocytochr_F_C  Apocytochrome F, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   5.7e-05      0.17      22      60 ..     241     279 ..     218     316 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.7e-05
                     SEEEEEEETSTSEEE-EEEESSS-BS--ST-EE-TT-BS CS
  Apocytochr_F_C  22 ggtevtietedgeavvetipaGpelivsegqevkageal 60 
                     + ++v ++t +g++  ++ipaG  l++++g +v+ + a 
      CTQ29656.1 241 NRSAVVVKTPSGDVKARAIPAGNLLLIAQGRSVQVDVAA 279
                     4678999**************************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4914.91
//
Query:       CTQ29657.1  [L=116]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-33  115.2   0.0    1.4e-33  115.1   0.0    1.0  1  Dehydratase_MU  Dehydratase medium subunit


Domain annotation for each model (and alignments):
>> Dehydratase_MU  Dehydratase medium subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   7.6e-38   1.4e-33       1     108 [.       7     111 ..       7     112 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 7.6e-38
  Dehydratase_MU   1 kPaivilvskeieeevlrevlaGiEEegvpyevvveetsdvaelAhqAaklSrlgvGigiqskgtvvihqkklpeesplellsqpladketlRal 95 
                     +Paivi+v++e++ e +r+vl+GiEEeg+p+ ++ ++  d+++ A+qAa++S l+vGi++++++ +++h+k+lp+++pl++l+  ++++ + R+ 
      CTQ29657.1   7 APAIVIAVTDECS-EQWRDVLLGIEEEGIPFVLQPQTGGDLVHHAWQAAQRSPLQVGIACDRER-LIVHYKNLPASTPLFSLMY-HQNRLARRNT 98 
                     5************.**************************************************.*******************.9********* PP

  Dehydratase_MU  96 GanAArlvkgepf 108
                     G+nAArlvkg+pf
      CTQ29657.1  99 GNNAARLVKGIPF 111
                     ************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 876.34
//
Query:       CTQ29658.1  [L=91]
Description: putative carboxysome-like ethanolaminosome structural protein, ethanolamine utilization protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-29  102.0   6.6    1.6e-29  101.7   6.6    1.1  1  BMC       BMC domain


Domain annotation for each model (and alignments):
>> BMC  BMC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   6.6   8.7e-34   1.6e-29       1      74 []       4      79 ..       4      79 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 8.7e-34
                EEEEEEEESHHHHHHHHHHHHHHSSEEEEEEEECTTTCEEEEEEESHHHHHHHHHHHHHHH..CHHEEEEEEESSE CS
         BMC  1 AlGlietrglaaaieaaDaalKaAnVelvgvekvgggkvtviitGdvaaVkaAveagveaa..kgelvsshviprp 74
                AlGl+et+gl+ aieaaDa++K+AnV+l+g+ek+g+g++tv+++Gdv+aVkaAv+ag +aa  +ge+ sshviprp
  CTQ29658.1  4 ALGLVETKGLVGAIEAADAMVKSANVQLIGYEKIGSGLITVMVRGDVGAVKAAVDAGSAAAsvVGEVKSSHVIPRP 79
                9************************************************************866***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 754.75
//
Query:       CTQ29659.1  [L=148]
Description: Propanediol utilization: polyhedral bodies [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-21   73.7   3.8    1.1e-20   73.4   3.8    1.1  1  BMC       BMC domain


Domain annotation for each model (and alignments):
>> BMC  BMC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   3.8   6.1e-25   1.1e-20       1      74 []       4      80 ..       4      80 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 6.1e-25
                EEEEEEEESHHHHHHHHHHHHHHSSEEEEEEEECTT.TCEEEEEEESHHHHHHHHHHHHHHH..CHHEEEEEEESSE CS
         BMC  1 AlGlietrglaaaieaaDaalKaAnVelvgvekvgg.gkvtviitGdvaaVkaAveagveaa..kgelvsshviprp 74
                +lGl+e++gla ai++aDa++KaA ++l+ +ek++g g+++v+i+Gdva+V+aAv +g+e a  ++ lv+++vi+rp
  CTQ29659.1  4 SLGLLEVSGLALAITCADAMAKAAAITLLALEKTNGsGWMVVKIAGDVASVQAAVMTGAELAerQQGLVAQKVIARP 80
                79**********************************89************************74466********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1182.60
//
Query:       CTQ29660.1  [L=210]
Description: Phosphate propanoyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-44  149.1   0.0    8.1e-25   86.8   0.0    2.1  2  PTAC      Phosphate propanoyltransferase


Domain annotation for each model (and alignments):
>> PTAC  Phosphate propanoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   4.5e-29   8.1e-25       2      82 .]      23     101 ..      22     101 .. 0.98
   2 !   60.4   0.1   7.7e-21   1.4e-16       2      81 ..     131     196 ..     130     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 4.5e-29
        PTAC   2 gvivsarHiHltqedaeklfg.yeltkkkdLsqpgqfadketVtvkvpeekglilenVrvlgperkatqveidtddanalgi 82 
                 ++++s rHiHl  +d+++lf  + +++kk L qpgq+a+++tVt+++p  kg+ l+nVr lgp r+ +qvei+++da+ lgi
  CTQ29660.1  23 PIGISSRHIHLAAADYARLFPaQPIQPKKALLQPGQYAAEQTVTLVGP--KGR-LNNVRLLGPLRQTSQVEISRTDARILGI 101
                 799******************9**************************..***.************************9997 PP

  == domain 2  score: 60.4 bits;  conditional E-value: 7.7e-21
        PTAC   2 gvivsarHiHltqedaekl.fgyeltkkkdLsqpgqfadketVtvkvpe.ekglilenVrvlgperkatqveidtddanalg 81 
                 g iv++rHiH+++ da +l ++                +++ V v +++ +++li++nV+v++ ++ +++++idtd+ana+g
  CTQ29660.1 131 GTIVAQRHIHMSPLDALILrVS----------------HGDSVAVAIEGsDRRLIFDNVAVRVAPDMRLEMHIDTDEANAAG 196
                 579*******************................999999999669******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1631.76
//
Query:       CTQ29661.1  [L=163]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-54  184.0   0.1      2e-54  183.8   0.1    1.0  1  PDU_like  Putative propanediol utilisation


Domain annotation for each model (and alignments):
>> PDU_like  Putative propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   0.1   1.1e-58     2e-54       1     153 []       7     158 ..       7     158 .. 0.99

  Alignments for each domain:
  == domain 1  score: 183.8 bits;  conditional E-value: 1.1e-58
    PDU_like   1 dkiveevvkrLkrRaessaelslsqlaeadsralflqhakvrltqvdlelleeLaelraeealvkwileaiaygvklqlslnqqllpalpvkmlarlpl 99 
                 ++iveev +rL rRa s+a+ls++ql+ead r+l++qha++r++qvdl+lle+La++ra +a+ ++++ea+a+gv++ql+l  +llpal+vk+larlpl
  CTQ29661.1   7 QRIVEEVAARLLRRALSTATLSVAQLGEADIRSLLCQHASLRIVQVDLPLLEQLAGQRALAAAGCALHEAMAWGVRVQLTLLPALLPALAVKKLARLPL 105
                 79************************************************************************************************* PP

    PDU_like 100 tfvdeqgqpvvlfkesvisysdvaalpsestlviarkqliTalArdaltarniq 153
                 tf+d  gqpv l+++sv++y+dva++ s+++lv++r+ +iTalAr+a++ar++q
  CTQ29661.1 106 TFSDPLGQPVRLHAASVLTYADVARF-SGGYLVLRRRPIITALAREAAVARHVQ 158
                 **************************.*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1313.73
//
Query:       CTQ29662.1  [L=91]
Description: putative carboxysome-like ethanolaminosome structural protein, ethanolamine utilization protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-30  104.5   0.3    3.7e-30  104.4   0.3    1.0  1  EutN_CcmL  Ethanolamine utilisation protein EutN/carboxysome


Domain annotation for each model (and alignments):
>> EutN_CcmL  Ethanolamine utilisation protein EutN/carboxysome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.3     2e-34   3.7e-30       1      83 []       1      87 [.       1      87 [. 0.93

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 2e-34
                -EEEEEEEEEEESEE-GGGTTSEEEEEEEE-TTS....-EEEEEEEEEESS---TT-EEEEEEGGGGGGSTT-TTSS-SEEEEEEES CS
   EutN_CcmL  1 MklakVigsvvstrkdeslkgkkLlvvqpldaeg....epkgeeiVavDtvgAgvGelVlvveGssarkaageknapvDaaivGiiD 83
                M+la+V+g vvst+k++sl+gkk+l+v++++a++     p++ ++VavD+vgAgvGelVl+++Gssar++++ +n+++D+a+vGi+D
  CTQ29662.1  1 MHLARVTGAVVSTQKSPSLNGKKMLLVRRVSADDdrpiLPTSGDEVAVDSVGAGVGELVLLCSGSSARHVFSGPNEAIDLAVVGIVD 87
                9*****************************66663344567999******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       176  (0.0098165); expected 358.6 (0.02)
Passed bias filter:                      155  (0.00864521); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 797.07
//
Query:       CTQ29663.1  [L=348]
Description: ATP:cob(I)alamin adenosyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-52  176.6   0.4    6.2e-52  176.0   0.4    1.3  1  Cob_adeno_trans  Cobalamin adenosyltransferase
      4e-28   97.9   0.5      4e-28   97.9   0.5    1.8  2  Haem_degrading   Haem-degrading
  ------ inclusion threshold ------
      0.021   13.8   0.0      0.031   13.3   0.0    1.1  1  DUF4702          Domain of unknown function (DUF4702)
      0.095   13.1   4.8       0.07   13.5   3.1    1.7  1  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.0   0.4   1.4e-55   6.2e-52       1     163 [.      13     176 ..      13     177 .. 0.94

  Alignments for each domain:
  == domain 1  score: 176.0 bits;  conditional E-value: 1.4e-55
                      XXXXXXXXXXXXXXXX.XXXTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHT...-BTCCG-S--HHHHHHHH CS
  Cob_adeno_trans   1 iyTrtGDkGtTslvggervsKddprveayGtvDelnsaiglarallaeeeeelkeaLeeiqneLfdlgaelatp..ekkkekkkiteeeveele 92 
                      iyTrtGD+G+Tsl++g+rvsK++prveayGt+Deln+++ l+   +  +eee ++ Le +q+++f   aela++  + +  k+ i++ee++ le
       CTQ29663.1  13 IYTRTGDAGSTSLFTGQRVSKTHPRVEAYGTLDELNAMLSLCVCAV--AEEEQRTLLEALQQHIFWFSAELASDseQPSPGKRYISSEEIALLE 104
                      9*****************************************9555..46799*******************98876666777899888***** PP

                      HHHHHHHHHS--EESEEES-SSHHHHHHHHHHHHHHHHHHHHHHHHHHS..HHHHHHHHHHHHHHHHHHHHH CS
  Cob_adeno_trans  93 keideleaelpplksfilpggspaaaalhvaRtvcRraERavvelaeee.veeevlkylNRLSDlLfvlarv 163
                      + id+  a++p l++f+lpg  +aa++lh+aRtv+RraER++vela+e  +++ +l+ylNRLSD+L++lar 
       CTQ29663.1 105 QTIDREMARVPALHQFVLPGRCEAASRLHLARTVARRAERRLVELAAEVtIRQILLRYLNRLSDCLYALARS 176
                      *********************************************99778889999**************95 PP

>> Haem_degrading  Haem-degrading
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.68   3.1e+03       5      27 ..     134     156 ..     131     190 .. 0.69
   2 !   97.9   0.5   8.8e-32     4e-28       4     118 ..     216     339 ..     213     340 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.68
  Haem_degrading   5 dAkelgaaarakarekgkpvvia 27 
                      A++++ +a++++ e  + v+i 
      CTQ29663.1 134 LARTVARRAERRLVELAAEVTIR 156
                     67777777777777777777664 PP

  == domain 2  score: 97.9 bits;  conditional E-value: 8.8e-32
  Haem_degrading   4 edAkelgaaarakarekgkpvviaivdaggqllffarmdgaspdnedwaerKantaarfgkstaalgeklk........eedya...grv.ilgG 86 
                     ++  +l+ +a+++ar+ ++pvv++ivda+g   +  rm++a + + ++a +Ka+ta+++++ t++l+  ++        e       g+v ++gG
      CTQ29663.1 216 HELHQLIRQAIEHARQLQVPVVVSIVDAHGTETVTWRMPDALLVSSELAPKKAWTAVAMKTATHELATTVQpgaalyglE---ShlqGKVvTFGG 307
                     566899*****************************************************************775555543...05668999**** PP

  Haem_degrading  87 GvpirvkggvvGaigvSGlkqeeDhqvavaal 118
                     G+p++ +g+++++ig+SG++ e+D+++a+aa+
      CTQ29663.1 308 GYPLWRDGQLIAGIGISGGSVEQDMAIAQAAM 339
                     ****99************************97 PP

>> DUF4702  Domain of unknown function (DUF4702)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   6.8e-06     0.031     221     279 ..      71     128 ..      60     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.8e-06
     DUF4702 221 eqPlsWfsgllgsssgtpeaselgpgeqeliflkrefnkeiksllsqpasfdlPgyCsl 279
                 +q + Wfs  l s s+ p   +   + +e+ +l + +++e+ +++  ++ f lPg C  
  CTQ29663.1  71 QQHIFWFSAELASDSEQPSPGKRYISSEEIALLEQTIDREM-ARVPALHQFVLPGRCEA 128
                 67889**********************************98.67889999*******76 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.1   1.6e-05      0.07      40     145 ..     134     244 ..      97     265 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
      AAA_16  40 lvrellralekdggif.lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala.........avpelagaea.....srllell 123
                 l+r+++r++e++  ++ l+++ +        ++l+++l r + +   l  a+s +++a++++l +++a         ++p+++ a+a     + l++l+
  CTQ29663.1 134 LARTVARRAERR--LVeLAAEVTIR------QILLRYLNRLSDCLYAL--ARSEDHAAHQRRLVTEIAarylaasgsPAPDAPKAQAgslsfHELHQLI 222
                 344444444444..11122222222......33666665544444444..55667999999999999999999999855555555557788******** PP

      AAA_16 124 krllallsrderplvlvlDdlq 145
                 +++++ +++ + p+v+ + d++
  CTQ29663.1 223 RQAIEHARQLQVPVVVSIVDAH 244
                 *************887665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 2979.55
//
Query:       CTQ29664.1  [L=462]
Description: putative aldehyde dehydrogenase, ethanolamine utilization protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-31  106.9   0.2    3.1e-25   88.6   0.2    2.1  2  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.2   1.7e-29   3.1e-25      30     291 ..      34     291 ..      24     304 .. 0.87
   2 !   16.2   0.0   1.6e-07    0.0029     355     426 ..     343     416 ..     317     430 .. 0.89

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 1.7e-29
                 HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHHHHHHSEEEEEECTTEEEEEEEEE- CS
      Aldedh  30 dvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyaelaeklegevlpssegklalvrrePl 127
                 dv +a++aA++af ++++ p+++R++i+ ++++ l+ +   lae  ++etG   +e +  + + a++        +e+l+ ++l+  +g + l+ + P+
  CTQ29664.1  34 DVGSAIDAAHQAFLRYQQCPLKTRSAIISALRETLAPELATLAEESATETGMGNKEDKYlKNKAALENT----PGIEDLTTSALTG-DGGMVLFEYSPF 127
                 7899***********************************************999998885555544444....4455555555555.488999****** PP

                 SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT.....TS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHHHHHH CS
      Aldedh 128 GvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea.....glPkgvlnvvtgsgsevgealvehpevdkvsftGstevgrki 221
                 Gv+ga++P   P  +++ + +  laaGN+v + P + +  ++l+l+  +ee+     g+ + v++v   +  e+ +++++hp ++++++tG+  +    
  CTQ29664.1 128 GVIGAVAPSTNPTETIINNSISMLAAGNSVYFSPHPGAKKVSLKLIARIEEIayrcsGIRNLVVTV-AEPTFEATQQMMSHPLIAVLAITGGPGI---- 221
                 ******************************************999999999656666666655544.4557899*****************8765.... PP

                 HHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHH CS
      Aldedh 222 akaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklve 291
                 ++   k+ k+v+    G+ p+iv e aDl ka+e+i+ ga +     Cia + l+v  s++d++++++++
  CTQ29664.1 222 VAMGMKSGKKVIGAGAGNPPCIVDETADLVKAAEDIISGAAFDYNLPCIAEKSLIVVASVADRLIQQMQD 291
                 445445579*********************************************************9976 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.6e-07
                 EEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEES..EEEEE-SBHHHHHHHHHHS-SSEEEESSS CS
      Aldedh 355 vlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGL..aagvftkdleraervaerleaGnvyiNds 426
                 ++a+v+ +++ ++ E   PVl+++++ d++ a+++a   e GL  +a  ++++++r++ +a+ l++     N +
  CTQ29664.1 343 LIAEVEANDPWVTCEQLMPVLPIVRVADFDSALALALRVEEGLhhTAIMHSQNVSRLNLAARTLQTSIFVKNGP 416
                 57889999999*******************************94458899***************998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 4092.66
//
Query:       CTQ29665.1  [L=370]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.6e-107  356.9   0.9   1.1e-106  356.8   0.9    1.0  1  Fe-ADH    Iron-containing alcohol dehydrogenase
    9.2e-16   58.3   0.1    1.3e-15   57.8   0.1    1.1  1  Fe-ADH_2  Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.8   0.9  1.2e-110  1.1e-106       2     361 ..       8     359 ..       7     362 .. 0.93

  Alignments for each domain:
  == domain 1  score: 356.8 bits;  conditional E-value: 1.2e-110
                 SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHHH CS
      Fe-ADH   2 trivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKai 100
                 tr++ g+g+l+ l++      ++++ iv+d++++ +s+lld+++++l  a  +v vf++++p+pt+++v++++a++++ +++vvi++GGGs++D+AKai
  CTQ29665.1   8 TRLYSGPGSLAALQRFS----HQHIWIVCDGFLA-RSPLLDRLRAAL-PASNRVSVFSDITPDPTIYTVAKGIAQMQALRPQVVIGFGGGSAMDAAKAI 100
                 68999999998888877....3689*******88.999*********.9999*********************************************** PP

                 HHHTT..................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH CS
      Fe-ADH 101 alllanpevedylgegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEayvsk 199
                   + +++        g +       ++aiPTt+GtGsevt+++vi+d+e+g k+++f++ l+Pd+ai+Dp+l++++P+ +ta tglDal+halEa vs+
  CTQ29665.1 101 VWFSQQG--------GLP----VDTCVAIPTTSGTGSEVTSACVISDPEKGIKYPLFHEALCPDMAIIDPTLVVSVPPTITAHTGLDALTHALEAWVSP 187
                 *****63........211....2338************************************************************************* PP

                 T---TTSSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH............HHHH CS
      Fe-ADH 200 kanplsdalaleairliaknleravadgedleareqmllastlaglafsnaglgavHalahalgalfgiphglanaillpavlrfna..eaaperlaql 296
                 +a++++dala++a+rl++++l+ a+++g+ ++ r++m++astlag+afs+aglg++Ha+ah+lg++f++phglana+ll av+rfna  ++a++r+a+l
  CTQ29665.1 188 QATDFTDALAEKAARLVFRALPVAIRQGDCIATRSKMHNASTLAGMAFSQAGLGLNHAIAHQLGGQFHLPHGLANALLLTAVIRFNAgePRAAKRYARL 286
                 ***************************************************************************************666667****** PP

                 HHT...........T--HHHHHHHHHHHHHTT---SHHHHT-TT-......HHHHHHHHHT-TSGGGGSSS---H CS
      Fe-ADH 297 aralgge....sdeeaaeeliealrellkelglptsLselgvdee......dldklaeaalkdrslannprelta 361
                 ara+        ++ea ++l++a+++l +++ +p +L+   ++e+      ++++++ aal+d +l++npr+++ 
  CTQ29665.1 287 ARACRFCppeaGEQEAFQALLTAVETLKQQCAIP-TLKGA-LQEKyplflsRIPAMVPAALADATLRTNPRPVDG 359
                 ***988899**999********************.67774.666556666688*******************986 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.1   1.5e-19   1.3e-15      13     246 ..      19     259 ..      14     262 .. 0.87

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 1.5e-19
    Fe-ADH_2  13 llkelelkkvllvadentkka.agekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyv...saklnvpy...vs 104
                  l++ + +++ +v d    +  + ++++ +l  ++ +v+v+++ ++++++ +v+k ++++++ + ++v++ GgG+++D+ak +   s + ++p+   v+
  CTQ29665.1  19 ALQRFSHQHIWIVCDGFLARSpLLDRLRAALPASN-RVSVFSDITPDPTIYTVAKGIAQMQALRPQVVIGFGGGSAMDAAKAIvwfSQQGGLPVdtcVA 116
                 567888899******99877669********9996.9********************************************975557777777554599 PP

    Fe-ADH_2 105 vpTaaSvDGfaspgaslvvd...gkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaamvqeaaeklved 199
                 +pT+    G   + a ++ d   g k  + ++a  P   i+D +++   P  ++a    D+l        +  a+++++ la+++a+ v+ a+  ++++
  CTQ29665.1 117 IPTTSG-TGSEVTSACVISDpekGIKYPLfHEALCPDMAIIDPTLVVSVPPTITAHTGLDALTHALEAWVSPQATDFTDALAEKAARLVFRALPVAIRQ 214
                 999755.455555555666556688888899********************99987666888877766667778899********************** PP

    Fe-ADH_2 200 kketealeellealalsgigisrpaSGsEHliSHaldmlalkqalHG 246
                 ++ +   +++ +a++l+g+++s+++ G  H i+H l   +  +  HG
  CTQ29665.1 215 GDCIATRSKMHNASTLAGMAFSQAGLGLNHAIAHQLGGQF--HLPHG 259
                 999*********************************9999..89999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2874.93
//
Query:       CTQ29666.1  [L=450]
Description: Respiratory-chain NADH dehydrogenase subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-41  139.8   0.1    1.1e-40  139.0   0.1    1.4  1  Complex1_51K   Respiratory-chain NADH dehydrogenase 51 Kd sub
    7.4e-14   51.5   0.1    1.8e-13   50.3   0.1    1.7  1  RnfC_N         RnfC Barrel sandwich hybrid domain
    7.8e-10   38.5   0.4    1.4e-09   37.6   0.4    1.5  1  SLBB           SLBB domain
      1e-07   32.4   4.3    1.7e-07   31.6   4.3    1.4  1  Fer4_17        4Fe-4S dicluster domain
    9.7e-05   22.9   4.7    0.00019   22.0   4.7    1.5  1  Fer4_7         4Fe-4S dicluster domain
    0.00049   20.2   5.3     0.0017   18.5   5.5    1.8  2  Fer4_9         4Fe-4S dicluster domain
     0.0011   19.4   2.1        1.1    9.8   0.1    2.3  2  Fer4_8         4Fe-4S dicluster domain
     0.0018   18.3  10.2      0.063   13.4   1.2    2.3  2  Fer4_10        4Fe-4S dicluster domain
      0.006   16.7   5.1       0.39   10.9   0.2    2.4  2  Fer4_21        4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.016   15.0   0.0      0.056   13.3   0.0    1.9  2  Biotin_lipoyl  Biotin-requiring enzyme
      0.016   15.2  12.6       0.51   10.5   2.2    2.5  2  Fer4_2         4Fe-4S binding domain
      0.062   13.8   9.9        1.3    9.7   0.5    2.4  2  Fer4_4         4Fe-4S binding domain
      0.068   14.1   9.7        2.5    9.1  10.5    2.3  2  Fer4_16        4Fe-4S double cluster binding domain


Domain annotation for each model (and alignments):
>> Complex1_51K  Respiratory-chain NADH dehydrogenase 51 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   0.1   7.6e-44   1.1e-40       1     151 [.      20     159 ..      20     160 .. 0.98

  Alignments for each domain:
  == domain 1  score: 139.0 bits;  conditional E-value: 7.6e-44
  Complex1_51K   1 vkeagivGrGGagfPthvKlkakakkkkkylivNaaEcEPgltkDrllmreepheileGlkiaaealgaekgvigvrdekpeaiealekalaeakaa 97 
                   v++ag+vG+GGagfPth+Kl+a  +    +++vNaaEcEP+l  D++lm+++++++++Gl  a+ a+ga++g+i++++++  ai+al+ +l e    
    CTQ29666.1  20 VRAAGVVGAGGAGFPTHIKLQARVD----TVLVNAAECEPMLKVDQQLMAQQADRLIRGLGYAMTATGAREGIIALKAKYAPAIAALTPRLPEW--- 109
                   789*********************8....*****************************************************************... PP

  Complex1_51K  98 glldievvklagkYpaGeekaLiesltgrevprgkppadvgvvvnNveTlaavy 151
                        +++ l++ YpaG+e   i   tgr+vp+ ++p+ vgvvvnNv+T+++++
    CTQ29666.1 110 ----ARLHILPDVYPAGDEVLTIWLATGRRVPPAALPVSVGVVVNNVQTVLNIA 159
                   ....57**********************************************97 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.1   1.3e-16   1.8e-13      29      86 ..     388     446 ..     375     450 .] 0.88

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 1.3e-16
      RnfC_N  29 elvlplsqhiGapakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrlva 86 
                  ++lpl+qhiG +a p+v+ g++V++Gq++a+  +  + apvhas+ G V ai++++++
  CTQ29666.1 388 CVTLPLRQHIGISAVPCVAPGERVTRGQLLADIPAdALGAPVHASIDGLVSAITEQAIT 446
                 5789****************************976688***************998765 PP

>> SLBB  SLBB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.4     1e-12   1.4e-09       2      56 ..     173     218 ..     172     220 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1e-12
                 EEEESSBSS-EEEEEETT-BHHHHHHTTT-SBSS.........-EEEE-SSSSS- CS
        SLBB   2 VtVtGeVkrPgnyevpigttlsdlieqaGGltddadlksvnLarlavipgGpmmg 56 
                  tV G+V+rP ++ vp+g++l++++++aGG t d            +i gGpmmg
  CTQ29666.1 173 LTVNGAVARPLTLAVPLGISLREVLDLAGGATVDDP---------GFINGGPMMG 218
                 59**********************************.........9********8 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   4.3   1.2e-10   1.7e-07       2      60 ..     263     323 ..     262     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.2e-10
     Fer4_17   2 CiqCgyClpeCpsyea.ydnepkkllraaklglleeaekeekaslCieCgeCe.rkCPqgl 60 
                 C qC+ C++ Cp++ + ++  p+ l+ra+++ +  + +    a +C+eC+ Ce  +CP g+
  CTQ29666.1 263 CEQCRLCTDLCPRHLIgHELSPHLLVRAVNYRQAATPSLLLSALTCSECNVCEsVACPVGI 323
                 *************9887999********9998666666668************999**887 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   4.7   1.4e-07   0.00019       2      52 .]     263     323 ..     262     323 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.4e-07
      Fer4_7   2 CigCgaCvaaCpvkaield..........eeenekgtekveidpekClgCgaCva.vCPtga 52 
                 C +C+ C++ Cp + i  +          +  +++ t+++ +++ +C+ C++C++ +CP+g+
  CTQ29666.1 263 CEQCRLCTDLCPRHLIGHElsphllvravN-YRQAATPSLLLSALTCSECNVCESvACPVGI 323
                 9***********999996644444443221.233466899999***********966**996 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   1.4   0.00016      0.23      34      50 ..     261     277 ..     244     278 .. 0.65
   2 !   18.5   5.5   1.2e-06    0.0017       2      49 ..     263     322 ..     262     324 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
      Fer4_9  34 eaCigCgaCveaCpkga 50 
                 + C +C+ C++ Cp++ 
  CTQ29666.1 261 TVCEQCRLCTDLCPRHL 277
                 46999999999999985 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 1.2e-06
      Fer4_9   2 CtgCgaCveaCpagvvvedaaerkarlraase............eaCigCgaCv.eaCpkg 49 
                 C +C+ C++ Cp +++  + ++      a ++              C +C+ C+  aCp g
  CTQ29666.1 263 CEQCRLCTDLCPRHLIGHELSPHLLVR-AVNYrqaatpslllsaLTCSECNVCEsVACPVG 322
                 ****************88888776553.333345899*******88********668*987 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   0.00077       1.1      46      64 ..     258     276 ..     228     278 .. 0.75
   2 !    8.9   0.2    0.0015       2.1       3      20 ..     306     324 ..     304     363 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00077
      Fer4_8  46 ealwsCttcgaCtevCpvg 64 
                  a   C +c+ Ct+ Cp +
  CTQ29666.1 258 IARTVCEQCRLCTDLCPRH 276
                 55667************87 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0015
      Fer4_8   3 ekCieCgaCq.saCpvlrr 20 
                   C eC  C+  aCpv  +
  CTQ29666.1 306 LTCSECNVCEsVACPVGIS 324
                 5799999999667996544 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   1.2   4.6e-05     0.063       4      24 ..     258     289 ..     255     301 .. 0.72
   2 !    9.5   2.2   0.00076         1       7      24 ..     306     324 ..     300     345 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.6e-05
     Fer4_10   4 idddtCirCgkCvkaCPadl...........t 24 
                 i +  C +C+ C++ CP +l           +
  CTQ29666.1 258 IARTVCEQCRLCTDLCPRHLighelsphllvR 289
                 66789************988666665555543 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00076
     Fer4_10   7 dtCirCgkCvka.CPadlt 24 
                  tC +C+ C ++ CP+ ++
  CTQ29666.1 306 LTCSECNVCESVaCPVGIS 324
                 69*********88***663 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.2   0.00028      0.39      28      52 ..     250     274 ..     240     279 .. 0.79
   2 !    7.4   0.8    0.0034       4.7      39      53 ..     306     321 ..     287     326 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00028
     Fer4_21  28 idaktvlkvvedeCvGCnlCssvCP 52 
                  d++t l++    C  C lC++ CP
  CTQ29666.1 250 QDERTLLAIARTVCEQCRLCTDLCP 274
                 4566777888999************ PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0034
     Fer4_21  39 deCvGCnlCssv.CPv 53 
                  +C  Cn+C sv CPv
  CTQ29666.1 306 LTCSECNVCESVaCPV 321
                 57*******9877**9 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.3   5.9e+03       6      24 ..     215     233 ..     214     234 .. 0.74
   2 ?   13.3   0.0   4.1e-05     0.056      20      58 ..     404     442 ..     396     448 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.3
                    SSSEEEEEE.ECSESSSTT CS
  Biotin_lipoyl   6 PmiGesveegvvevlvkvG 24 
                    Pm+G+++++  + v++ +G
     CTQ29666.1 215 PMMGSLITSLETPVTKTTG 233
                    9999999954777776666 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 4.1e-05
                    SSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESS CS
  Biotin_lipoyl  20 lvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilv 58 
                     v++G+ V+ gq la + a+ +  ++ a  +G v+ i  
     CTQ29666.1 404 CVAPGERVTRGQLLADIPADALGAPVHASIDGLVSAITE 442
                    699*******************************99975 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.9   0.00074         1       9      21 ..     262     274 ..     256     275 .. 0.89
   2 ?   10.5   2.2   0.00037      0.51       8      21 ..     306     320 ..     300     321 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00074
      Fer4_2   9 rCigCgaCvsaCP 21 
                  C +C+ C++ CP
  CTQ29666.1 262 VCEQCRLCTDLCP 274
                 7************ PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00037
      Fer4_2   8 drCigCgaCvsa.CP 21 
                  +C +C+ C s+ CP
  CTQ29666.1 306 LTCSECNVCESVaCP 320
                 58*******9888** PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.5   0.00094       1.3       4      15 ..     263     274 ..     258     289 .. 0.92
   2 ?    7.6   3.3    0.0046       6.3       3      17 .]     307     322 ..     305     322 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00094
      Fer4_4   4 CigCgsCvaaCP 15 
                 C +C+ C++ CP
  CTQ29666.1 263 CEQCRLCTDLCP 274
                 99*********9 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0046
      Fer4_4   3 rCigCgsCvaa.CPqg 17 
                 +C +C +C+++ CP+g
  CTQ29666.1 307 TCSECNVCESVaCPVG 322
                 5*************75 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  10.5    0.0018       2.5       2      66 ..     263     321 ..     262     322 .. 0.76
   2 ?    2.7   3.6      0.17   2.4e+02       1      16 [.     307     323 ..     307     342 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0018
     Fer4_16   2 CgtCgkCaevCPtnaikekkekeiearecisyntaekkdlaedeekckkqeaitgCdiCqdv.CPa 66 
                 C +C+ C++ CP + i ++ ++ +  r+ ++y++a + +l  ++ +c        C++C+ v CP+
  CTQ29666.1 263 CEQCRLCTDLCPRHLIGHELSPHLLVRA-VNYRQAATPSLLLSALTCS------ECNVCESVaCPV 321
                 *******************666666444.5666666666666666666......999999876886 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.17
     Fer4_16   1 rCgtCgkCae.vCPtna 16 
                 +C +C+ C + +CP++ 
  CTQ29666.1 307 TCSECNVCESvACPVGI 323
                 59******973599985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3550.02
//
Query:       CTQ29667.1  [L=184]
Description: Propanediol utilization polyhedral bodies protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-42  143.6  10.1    5.3e-21   74.4   0.2    2.0  2  BMC             BMC domain
  ------ inclusion threshold ------
      0.055   13.0   0.1      0.093   12.2   0.1    1.3  1  Proteasome      Proteasome subunit
      0.061   13.1   0.3       0.18   11.6   0.1    1.8  2  Formyl_trans_N  Formyl transferase


Domain annotation for each model (and alignments):
>> BMC  BMC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.2   8.8e-25   5.3e-21       1      73 [.       4      76 ..       4      77 .. 0.97
   2 !   72.6   4.9   3.2e-24   1.9e-20       1      74 []      96     173 ..      96     173 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 8.8e-25
                EEEEEEEESHHHHHHHHHHHHHHSSEEEEEEEECTTTCEEEEEEESHHHHHHHHHHHHHHHCHHEEEEEEESS CS
         BMC  1 AlGlietrglaaaieaaDaalKaAnVelvgvekvgggkvtviitGdvaaVkaAveagveaakgelvsshvipr 73
                A+G++e +++a ++e  D++lK+AnV+l+ +++ ++gk+++++ Gdv+aV++A++ag + a ++lv+s v+++
  CTQ29667.1  4 AIGILELTSIARGMELGDVMLKSANVQLLLCRTLCPGKFLLMLGGDVGAVQQAIAAGTARAGEMLVDSLVLAN 76
                9************************************************************888****99876 PP

  == domain 2  score: 72.6 bits;  conditional E-value: 3.2e-24
                 EEEEEEEESHHHHHHHHHHHHHHSSEEEEEEEECTT.T.CEEEEEEESHHHHHHHHHHHHHHH..CHHEEEEEEESSE CS
         BMC   1 AlGlietrglaaaieaaDaalKaAnVelvgvekvgg.g.kvtviitGdvaaVkaAveagveaa..kgelvsshviprp 74 
                 A G++et ++aa+i aaD a+KaAnV+lv+v+ + g g k++++++Gd+a+V +Av ++ + a  kg lv+  viprp
  CTQ29667.1  96 AAGIVETWSVAACISAADRAVKAANVTLVRVHMAFGiGgKCYMVVAGDIADVDNAVTVASDSAgeKGLLVHRAVIPRP 173
                 88**********************************647************************86699*********8 PP

>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.6e-05     0.093      19      75 ..     111     165 ..     106     176 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.6e-05
                 EEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHH CS
  Proteasome  19 aadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlry 75 
                 aad+ ++  + +   + v+  f i  ++++++aG++aD+++ v  a+  a ++ l  
  CTQ29667.1 111 AADRAVK-AANVTLVR-VHMAFGIGGKCYMVVAGDIADVDNAVTVASDSAGEKGLLV 165
                 5665555.33333444.678899*********************9999887776655 PP

>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.33     2e+03     119     135 ..      51      67 ..      46      72 .. 0.84
   2 ?   11.6   0.1     3e-05      0.18     105     129 ..      75      99 ..      65     109 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.33
                     -HHHHHHHTTSSEEEEE CS
  Formyl_trans_N 119 aaiqraleaGdketGvt 135
                      a+q+a+ aG   +G +
      CTQ29667.1  51 GAVQQAIAAGTARAGEM 67 
                     5899******9999965 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 3e-05
                     EEEESSSTTTTBSS-HHHHHHHTTS CS
  Formyl_trans_N 105 lniHpSLLPrfkGaaaiqraleaGd 129
                      niHpS LP+  G++++ +   aG 
      CTQ29667.1  75 ANIHPSVLPAISGLNVVGQRQAAGI 99 
                     5***************998777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1516.18
//
Query:       CTQ29668.1  [L=116]
Description: putative carboxysome-like ethanolaminosome structural protein with putative role in ethanol utilization [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-13   48.6   0.3    9.2e-13   48.0   0.3    1.2  1  BMC       BMC domain


Domain annotation for each model (and alignments):
>> BMC  BMC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.3   5.1e-17   9.2e-13       1      71 [.      45     111 ..      45     113 .. 0.94

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 5.1e-17
                 EEEEEEEESHHHHHHHHHHHHHHSSEEEEEEEECTTTCEEEEEEESHHHHHHHHHHHHHHHCHHEEEEEEE CS
         BMC   1 AlGlietrglaaaieaaDaalKaAnVelvgvekvgggkvtviitGdvaaVkaAveagveaakgelvsshvi 71 
                 A+G++++++ +a i+a+D a+K++ Ve+  +++++g    v++tGdv+aV+ A+  + +++ gel+  + +
  CTQ29668.1  45 AIGILTITPSEASIIACDIATKSGAVEIGFLDRFTG---AVVLTGDVSAVEYALRQVTRTL-GELMRFTAC 111
                 9***********************************...9****************99999.888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       277  (0.0154498); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 892.06
//
Query:       CTQ29669.1  [L=146]
Description: Propanediol utilization protein PduV [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-57  193.7   0.0    1.3e-57  193.6   0.0    1.0  1  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
    0.00027   20.9   0.0       0.65    9.9   0.0    2.3  2  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.026   14.7   0.0    1.6  2  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.018   14.5   0.0      0.024   14.1   0.0    1.1  1  TniB          Bacterial TniB protein
       0.02   14.3   0.0       0.03   13.7   0.0    1.3  1  SRPRB         Signal recognition particle receptor beta subun
      0.035   14.2   0.0       0.46   10.6   0.0    2.1  1  MMR_HSR1      50S ribosome-binding GTPase
      0.044   14.2   0.0      0.051   14.0   0.0    1.2  1  AAA_16        AAA ATPase domain
      0.088   13.3   0.0       0.11   13.0   0.0    1.2  1  ABC_tran      ABC transporter
       0.19   12.2   0.0       0.27   11.7   0.0    1.3  1  RNA_helicase  RNA helicase
       0.25   11.2   0.0        0.5   10.3   0.0    1.5  2  Rad17         Rad17 P-loop domain


Domain annotation for each model (and alignments):
>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.6   0.0   7.2e-61   1.3e-57       1     142 [.       1     141 [.       1     142 [. 0.99

  Alignments for each domain:
  == domain 1  score: 193.6 bits;  conditional E-value: 7.2e-61
   PduV-EutP   1 mkkilliGkvgsGKttLtqalkgeelkYkktqaiefsdeviDtPGeylenrklysalivtsaeadvialvqdateeesvfppgfasvfnkeviGiitki 99 
                 mk+++liG++++GKt+Ltq l+ge+l+Y+ktqai +++++iDtPGeylenr+lysal ++++eadvialv++a++++s f+pgf++ +n++viG+itk+
  CTQ29669.1   1 MKRLMLIGPSQCGKTSLTQVLRGETLRYQKTQAIVWTPAAIDTPGEYLENRCLYSALLTSACEADVIALVLNADAPWSPFSPGFTAPMNRPVIGVITKA 99 
                 9************************************************************************************************** PP

   PduV-EutP 100 dlaedeenieaveelLksaGaekifevsavekegieellkyle 142
                 dla    ++++v+++L++aGa +if +sa++ +g+++l+++l+
  CTQ29669.1 100 DLA-APPRLQQVRTWLETAGAGHIFITSALTGDGLDDLFACLN 141
                 ***.9***********************************997 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00036      0.65     102     128 ..       4      32 ..       1      37 [. 0.78
   2 !    8.8   0.0   0.00077       1.4      49      98 ..      92     141 ..      85     145 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00036
                  EEEECSTTSSHHHHHHHHCTT-..----S CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpel..elktg 128
                   +l+G+S  GK++L  +l++e+   +kt+
   CTQ29669.1   4 LMLIGPSQCGKTSLTQVLRGETlrYQKTQ 32 
                  689****************9842244454 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00077
                  EEEEEE-GGG--HHHHHHHHHHHHHHTTS.EEEE--TTTHTTHHHHHHHCT CS
  RsgA_GTPase  49 pvivlnKiDlleeeeeleelkeelealgy.evllvsaktkegleelkellk 98 
                  ++ v++K+Dl+   + l+++++ le++g  +++++sa t++gl++l + l+
   CTQ29669.1  92 VIGVITKADLAAPPR-LQQVRTWLETAGAgHIFITSALTGDGLDDLFACLN 141
                  4449**********9.9999999999997267788999*******998876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.4e-05     0.026       1      31 [.       3      33 ..       3      51 .. 0.83
   2 ?   -3.5   0.0       6.6   1.2e+04     108     119 ..      89     100 ..      87     101 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
                EEEEESSTTSSHHHHHHCHCT-CCC-EEETT CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedkfsekekst 31
                +++l+G s+ GKtsl + +  ++ + ++++ 
  CTQ29669.1  3 RLMLIGPSQCGKTSLTQVLRGETLRYQKTQA 33
                68***************99999887555544 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6.6
                 SS-EEEEEE-TT CS
         Roc 108 kspvilvgnkiD 119
                 + pvi v++k+D
  CTQ29669.1  89 NRPVIGVITKAD 100
                 578999999998 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   1.3e-05     0.024      35      93 ..       1      60 [.       1      66 [. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.3e-05
        TniB 35 mpnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekr.lyaaiLea 93
                m+ l+l+G+s++GKt++ +  + +  ++++++a      ++++p +  e+r ly+a+L++
  CTQ29669.1  1 MKRLMLIGPSQCGKTSLTQVLRGETLRYQKTQAIVWTPAAIDTPGEYLENRcLYSALLTS 60
                789*****************9999999999999988889999998875554499999986 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.7e-05      0.03       5      33 ..       3      33 ..       1      49 [. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
                EEEEE-STTSSHHHHHHHHHHS..S---B-- CS
       SRPRB  5 avllvGlsdsGKTslftrLttd..svkktvt 33
                +++l+G+s++GKTsl + L  +   ++kt++
  CTQ29669.1  3 RLMLIGPSQCGKTSLTQVLRGEtlRYQKTQA 33
                789************9988877555667765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00026      0.46       2      86 ..       4      74 ..       3     100 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00026
                EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHH.HHCTSEEEEEEETT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkafla.leeadlillvvdas 86
                 +++G +  GK++L + l ge+ +     ++T+ i++   +        +DtpG +    e++ l  a+l    ead+i+lv++a 
  CTQ29669.1  4 LMLIGPSQCGKTSLTQVLRGETLRY----QKTQAIVWTPAA--------IDTPGEYL---ENRCLYSALLTsACEADVIALVLNAD 74
                689999999***9999999986655....456666665443........78888332...24444444444133478877777754 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.8e-05     0.051      27     103 ..       4      86 ..       2     142 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
      AAA_16  27 vllsGesGvGKsslvrellr.alekd..ggif.....lrgkcdqlesaipysa.laqalareellrqlldeaesaeleawreklee 103
                 ++l+G+s +GK+sl + l+   l+ +   +i+     + +  + le    ysa l++a+ + ++++ +l++  +a +++++  +++
  CTQ29669.1   4 LMLIGPSQCGKTSLTQVLRGeTLRYQktQAIVwtpaaIDTPGEYLENRCLYSAlLTSAC-EADVIALVLNA--DAPWSPFSPGFTA 86 
                 689************88884333333444444434332222222244577788666777.44777777766..3345555554444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.4e-05      0.11      12      36 ..       2      26 ..       1      54 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.4e-05
                SEEEEEESTTSSHHHHHHHHTTSS- CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlkllagllk 36
                +++ ++G++ +GK++L ++l g++ 
  CTQ29669.1  2 KRLMLIGPSQCGKTSLTQVLRGETL 26
                5789*****************9875 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015      0.27       2      38 ..       5      38 ..       4      54 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
  RNA_helicase  2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrn 38
                  +l Gps++GK++l++ L  + l    ++k++ +++ +
    CTQ29669.1  5 MLIGPSQCGKTSLTQVLRGETL---RYQKTQAIVWTP 38
                  799*************887777...455666666555 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00028       0.5      48      68 ..       4      24 ..       1      42 [. 0.78
   2 ?   -3.1   0.0       3.4   6.1e+03      28      37 ..     107     116 ..     102     126 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00028
       Rad17 48 LLisGPsGCgkstvvkvLske 68
                L++ GPs Cgk+   +vL  e
  CTQ29669.1  4 LMLIGPSQCGKTSLTQVLRGE 24
                6777************99755 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.4
       Rad17  28 ieevkewlka 37 
                 +++v++wl++
  CTQ29669.1 107 LQQVRTWLET 116
                 5667777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1134.12
//
Query:       CTQ29670.1  [L=404]
Description: putative propionate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.6e-148  493.9   0.0   2.9e-148  493.7   0.0    1.0  1  Acetate_kinase  Acetokinase family


Domain annotation for each model (and alignments):
>> Acetate_kinase  Acetokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  493.7   0.0  1.6e-152  2.9e-148       1     390 []       4     387 ..       4     387 .. 0.99

  Alignments for each domain:
  == domain 1  score: 493.7 bits;  conditional E-value: 1.6e-152
  Acetate_kinase   1 kvLviNaGSsSlKfqlleaeakeevllkglveeilleeaellkklegekkeaektaiadheealklilntlkeekvikdlkeiaaighRvvhgge 95 
                     k++ iNaGSsSlKfqll++  ++  l +gl+e+i+l+ea+++ k ++ +k +e++ iadh+ea++l+l++l+  ++ ++l+ei+ +ghRv+hgge
      CTQ29670.1   4 KIMAINAGSSSLKFQLLNMP-QGALLCQGLIERIGLPEARFTLK-TSAQKWQETLPIADHHEAVTLLLEALTGRGILSSLQEIDGVGHRVAHGGE 96 
                     799****************6.9*********************9.88888********************************************* PP

  Acetate_kinase  96 kftesvlitdevvekikdlielaplhNpanlegieaakkllpevknvavfDtafhqtlpeeaylyalpeelyeehgiRrygfHgtshkyvskraa 190
                      f++++l+ d+++ +i++l+elaplhNp n  gi+ +++llp v++vavfDtafhqtl++ea ly+lp+++y+e+giRrygfHgtsh+yvs  +a
      CTQ29670.1  97 RFKDAALVCDDTLREIERLAELAPLHNPVNALGIRLFRQLLPAVPAVAVFDTAFHQTLAPEAWLYPLPWRYYAELGIRRYGFHGTSHHYVSSALA 191
                     *********************************************************************************************** PP

  Acetate_kinase 191 kilgkpledlnlivcHlGnGaSvaavknGksvdtsmgltpLeGlvmgtRsGdidpailvylaeteglsadeventlnkksGllglsglssDlrev 285
                     + lg pl  l++++cHlGnG Sv+a+k+G+sv+tsmg+tp  G++mgtRsGdidp+il +l+e+eg sa++++++ln +sGllg+sg+ssD r+v
      CTQ29670.1 192 EKLGVPLSALRVVSCHLGNGCSVCAIKGGQSVNTSMGFTPQSGVMMGTRSGDIDPSILPWLVEKEGKSAQQLNQLLNNESGLLGVSGVSSDYRDV 286
                     *********************************************************************************************** PP

  Acetate_kinase 286 edaaeegdeeaelalkvyvhrlakyigeyaavlegkvDaivFTgGigenaalvrelvlkalevlglevdkeknknrsGedelisteqskvkvivv 380
                     e+aa++g+e+a lal ++++r++ +ig+y+ ++ g++Da++FTgGigen+a  r+ ++++l++lgl++d+ekn+    + ++i  +++ vkv+v+
      CTQ29670.1 287 EQAADAGNERAALALSLFAERIRATIGSYIMQM-GGLDALIFTGGIGENSARARATICRNLHFLGLALDDEKNQ---RSATFIQADNALVKVAVI 377
                     *********************************.8**************************************6...45679************* PP

  Acetate_kinase 381 ptnEelaiaq 390
                     +tnEel+ia+
      CTQ29670.1 378 NTNEELMIAR 387
                     ********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3046.71
//
Query:       CTQ29671.1  [L=300]
Description: Propanediol utilization [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-08   34.4   0.1    4.2e-08   33.3   0.1    1.6  1  GHMP_kinases_N  GHMP kinases N terminal domain
     0.0071   16.7   0.0      0.013   15.8   0.0    1.4  1  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   4.7e-12   4.2e-08       1      46 [.      84     132 ..      84     137 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 4.7e-12
                     EEEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHH...HHHHHHHH CS
  GHMP_kinases_N   1 divikseiPvgaGLGSSAAlavalvaAllallglslee...aklaleae 46 
                     +i+++s+iPv++G++SS+A+++a+++A +++lg  l+e   a+l++  e
      CTQ29671.1  84 RITLHSTIPVAKGMASSTADIAATAVATAHHLGHLLDEptlARLCVALE 132
                     699*****************************97775546788877665 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.5e-06     0.013       8      68 ..     208     262 ..     191     276 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.5e-06
  GHMP_kinases_C   8 gdlellgellnlsqrselkavvgilppeleellealselGalgaklsGaGgGptvfalfkd 68 
                     g+ +llge+++ s+      +    +p +++ll++ +++G +g  + ++  G+ v  l  d
      CTQ29671.1 208 GNPQLLGEAATISAI---ASQQLLPKPGFDALLDLVESAGLYGLNVAHS--GSVVGLLL-D 262
                     899999999999999...779999****************888888888..***99998.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2383.69
//
Query:       CTQ29672.1  [L=358]
Description: Threonine-phosphate decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-40  140.0   0.0    1.2e-40  139.8   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II
     0.0063   15.4   0.0        2.4    7.0   0.0    2.2  2  Alliinase_C    Allinase
     0.0066   16.2   2.9        0.1   12.4   0.1    3.2  4  HTH_8          Bacterial regulatory protein, Fis family


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.8   0.0   2.1e-44   1.2e-40       3     363 .]      26     353 ..      24     353 .. 0.94

  Alignments for each domain:
  == domain 1  score: 139.8 bits;  conditional E-value: 2.1e-44
                    EEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEE CS
  Aminotran_1_2   3 vinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilv 98 
                    ++++++n ++ +     + + ++a  +     g + +y++ + +++l +ala  ++        + a ++ g+G ++ i +l   lk    ++  +
     CTQ29672.1  26 LLDFSANINPLG----MPASLRQAIVD---NPGCAERYPDVE-YQQLHQALAAHHQ-------LPAAHILAGNGETESIFTLVHGLK---PRRAMI 103
                    688999999999....99999999977...8889999*****.*************.......5666*******************6...556777 PP

                    EESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCB CS
  Aminotran_1_2  99 pdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfv 194
                      p +a+y ++l+  ++evv+y+l++ ++++l+ +a+++al+          ++++++p+NPtG ++ +  le++++ +++ n+ l++Dea+ +f 
     CTQ29672.1 104 VIPGFAEYRRALQTVDCEVVEYALRERDGWQLT-DAILDALTP------ALDCLFLCTPNNPTGLLPERGLLEAIAQRCRALNISLILDEAFLDFI 192
                    789****************************97.999999**9......668******************************************** PP

                    SSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEE.EHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 195 fgsldavatranveeepnllivgslsKafGlaGeRvGyilg.naavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrrkelr 289
                     +++++   +++++++p++ +++sl K ++++G+R+Gy+l  +a  v  lr  + p+ + ++++ a   +l+d      +  ++ q lq++  +++
     CTQ29672.1 193 PDQPGF---IPLLAQHPHVWVLRSLTKFYAIPGLRLGYLLNaDAQAVARLRARQMPWSINAYAALAGEIILQDRA----YQRATWQWLQEEGARFY 281
                    **9988...99*****************************99**************999***9999999999999....99*************** PP

                    HHHHHS.TEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS.TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 290 deLael.glkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftv.pgrlRitvAglteeeleelveal 363
                    ++L+e  gl+v++  ++++ l +++++ + +l+ +Ll ++ ++ +  +++++ +  +R+ +   ++ee+++l+ al
     CTQ29672.1 282 AQLQEMaGLTVWPGRANYLFL-RCDRA-DFDLQYALLRQHVLIRSCANYPGLdSRYFRVAI--RSAEENDQLLAAL 353
                    **************8887666.88888.8**********9999999******999******..********99886 PP

>> Alliinase_C  Allinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0004       2.4      53     215 ..      62     237 ..      54     244 .. 0.66
   2 !    6.4   0.0   0.00057       3.4     303     361 ..     298     355 ..     270     357 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0004
                  HHHHHHH-S.B--TTSEEEEECHHHHHHHHHHHHHHHH..SSSSSEEEEE-SS--THHHHHTTTT-BTTEEEEEES.TT-.......--S..S-EEEE CS
  Alliinase_C  53 kelhevvGn.aatddryivvGtGstqLlqalvyalspeasseskpvkvvaavPyysvykeqtslldsklykweGda.aayv......kkknpeefiel 142
                  ++lh+++    +    +i+ G+G t+ + +lv+ l p+        + +  +P ++ y++  + +d +  +++      ++      +  +p     +
   CTQ29672.1  62 QQLHQALAAhHQLPAAHILAGNGETESIFTLVHGLKPR--------RAMIVIPGFAEYRRALQTVDCEVVEYALRErDGWQltdailDALTPALDCLF 151
                  56777665413456789999******999999999998........3344589999999999999999888875430345532333222233333346 PP

                  EESS-TTT--------.....-TT-E...EEEEE-TT-.....STTTS---S-B--SEEEEEHHHHHS-GGG-EEEEEES-HHHHH CS
  Alliinase_C 143 vtsPnnPdgllreavv.....kgsea...kviyDlayY.....WPhytpitskadedimLftlskltGhaGsrlGWalvkdkevak 215
                     PnnP gll e  +     ++++a    +i D a+       P + p+ ++  +  +L +l k+    G rlG+ l  d +   
   CTQ29672.1 152 LCTPNNPTGLLPERGLleaiaQRCRAlniSLILDEAFLdfipdQPGFIPLLAQHPHVWVLRSLTKFYAIPGLRLGYLLNADAQAVA 237
                  789*****998654332332355555221356666653222225778888888888888999999999999999988877776555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00057
                  SEEEEEESSSS..-HHHHHHTTTEEEEEGGGGTS-TTEEEEESSS-HHHHHHHHHHHHT CS
  Alliinase_C 303 ayaWlkcekeededcaevlrekkiltrsGevfeaesryvrlsllkrdddfdvllerlkk 361
                   y +l+c++ + +  +++lr++ ++    ++ + +sry r+++ ++ ++ d+ll+ l++
   CTQ29672.1 298 NYLFLRCDRADFDLQYALLRQHVLIRSCANYPGLDSRYFRVAI-RSAEENDQLLAALRR 355
                  6899****8875555666677766667778889********96.556667999988865 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   1.7e-05       0.1      16      32 ..       7      23 ..       6      26 .. 0.89
   2 ?    2.7   0.0     0.018   1.1e+02       3      18 ..      57      72 ..      56      80 .. 0.88
   3 ?   -3.2   0.0       1.3   7.9e+03       5      19 ..     118     132 ..     115     134 .. 0.76
   4 ?   -3.3   0.1       1.4   8.2e+03       6      18 ..     164     176 ..     164     176 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.7e-05
                HTTT-HHHHHHHHTS-H CS
       HTH_8 16 rtgGnkskAArlLGisR 32
                ++gGn+ +AA lLGi +
  CTQ29672.1  7 AHGGNIREAAALLGIAP 23
                69************965 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.018
                HHHHHHHHHHHHHHTT CS
       HTH_8  3 eevEkelIeaALertg 18
                ++vE + + +AL++++
  CTQ29672.1 57 PDVEYQQLHQALAAHH 72
                589**********997 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHTTT CS
       HTH_8   5 vEkelIeaALertgG 19 
                 v++e+ e AL++ +G
  CTQ29672.1 118 VDCEVVEYALRERDG 132
                 788999999987665 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHTT CS
       HTH_8   6 EkelIeaALertg 18 
                 E+ l+ea  +r++
  CTQ29672.1 164 ERGLLEAIAQRCR 176
                 8999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2923.36
//
Query:       CTQ29673.1  [L=417]
Description: N-acetylmuramoyl-L-alanine amidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-50  169.3   0.3    1.2e-49  168.8   0.3    1.2  1  Amidase_3  N-acetylmuramoyl-L-alanine amidase
    1.6e-25   89.0   0.0    2.9e-25   88.2   0.0    1.4  1  AMIN       AMIN domain


Domain annotation for each model (and alignments):
>> Amidase_3  N-acetylmuramoyl-L-alanine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   0.3   1.3e-53   1.2e-49       1     174 [.     190     404 ..     190     405 .. 0.99

  Alignments for each domain:
  == domain 1  score: 168.8 bits;  conditional E-value: 1.3e-53
   Amidase_3   1 ividpGHGgkdpGavgknglkEkdlnlkvalklaklLeakg.aeVvltrdddksvslkeranianksradlfvsiHadsaanssasGvevfy....... 91 
                 i++dpGHGg+d+Gavgk +++Ekd++l++a++l++l+ ++g ++ ++tr++d++++lk r+++a+k+radlfvsiHad++++++ sG +vf        
  CTQ29673.1 190 IMLDPGHGGEDSGAVGKYRTREKDVVLQIARRLRALIDKEGnMKAYMTRNEDVFIPLKVRVAKAQKQRADLFVSIHADAFTSRQPSGSSVFAlstkgat 288
                 9***************99********************************************************************************* PP

   Amidase_3  92 ..................................leknekkaeskrlaksiqkelkkklglknrgvkeannlyvlrktkipavlvElgfisnpedakll 156
                                                   + ++ + a+s ++ k++ +++ + ++l+++ v++a  ++vl++++ip++lvE++fisn e++++l
  CTQ29673.1 289 staakylaqtqnasdliggvsksgdryvdhtmfdMVQSLTIADSLKFGKAVLEKMGNINNLHKNRVEQAG-FAVLKAPDIPSILVETAFISNVEEERKL 386
                 **********************************************************************.**************************** PP

   Amidase_3 157 kseeyqeklakaiaegik 174
                 k+ ++q+++a++i  gik
  CTQ29673.1 387 KTAKFQQEVAESILAGIK 404
                 *****************7 PP

>> AMIN  AMIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0   3.3e-29   2.9e-25       1      97 []      39     142 ..      39     142 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 3.3e-29
        AMIN   1 vrinksddntelvletskaekykvftlsnpnrlviDlpnaelglelk....riennkpgiksvrvvgqkdpntvRvvldldksvkpq....epvrksgk 91 
                 vr+++++++t++++e++   ky++f lsnp+r+v+Dl++++l+++lk    +i  ++p iks+r vgq+dp+tvR+v++l+++vkpq    +pv+  ++
  CTQ29673.1  39 VRVWPASTYTRVTVESNHVLKYRQFALSNPERVVVDLEGVNLNSVLKgmggQIRADDPFIKSAR-VGQFDPQTVRMVFELKQNVKPQlfalAPVAGFKE 136
                 89**************************************************************.88************************99****** PP

        AMIN  92 glvvdl 97 
                 +lv dl
  CTQ29673.1 137 RLVMDL 142
                 ***997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3291.77
//
Query:       CTQ29674.1  [L=443]
Description: fused acetylglutamate kinase homolog (inactive); amino acid N-acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-34  117.4   0.3    1.1e-33  116.8   0.3    1.3  1  AA_kinase        Amino acid kinase family
    3.9e-09   36.8   0.0    5.7e-08   33.0   0.0    2.5  2  Acetyltransf_1   Acetyltransferase (GNAT) family
      2e-06   28.1   0.0    2.6e-05   24.6   0.0    2.4  2  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00095   19.1   0.0     0.0081   16.1   0.0    2.3  2  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.074   13.1   0.0       0.26   11.4   0.0    2.0  1  Acetyltransf_9   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.3   3.1e-37   1.1e-33       1     240 [.      26     268 ..      26     269 .. 0.91

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 3.1e-37
                 TEEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHG CS
   AA_kinase   1 krvVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglp 99 
                 k++V+ lGG +++ + +  + +++++i  l++ g++lvvV G+++++d+ la+ ++ ++ +++ + r+t+++++e+++ +a+++l  +++a+l +  l+
  CTQ29674.1  26 KTFVIMLGGEAIEHE-N--FSNIVNDIGLLHSLGIRLVVVYGARPQIDANLAE-HHHEPVYHK-QTRVTDAKTLELVK-QAAGMLQLEITARL-SMSLN 117
                 689**********55.4..8*********************************.999999999.9************9.89999988888877.55669 PP

                 EEEE-GGGTCEECCCE..............HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCE CS
   AA_kinase 100 avglsaaaldateagr............degsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVy 186
                 + +l++a ++++++++            d+ ++g+++++d+eai+++l++g ++ +++  +++++ge+ +++s+ ia+ lA +l+A+k+i + +  GVy
  CTQ29674.1 118 NTPLQGAHINVVSGNFiiaqplgvddgvDYCHSGRIRRIDEEAIHRQLDSGAIVLMGPV-AVSVTGESFNLTSEEIATQLAIKLKAEKMIGFCSSQGVY 215
                 ***************************************************88888886.5******99****************************** PP

                 SSTTTTCCTTCECCEEEHHHCHH.CSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 187 dadpkkvpdarllpeisvdeaee.saselatgGmkvkhpaalaaarrggipvvIt 240
                 +  + +v   +l+p+ +   +ee +a+e+ + G+  +++ a++a+r+g+ +++++
  CTQ29674.1 216 NQAGEIV--SELFPNEAQARVEElEADEDYNSGTVRFLRGAVKACRSGVRRCHLI 268
                 9998777..46666554444444888**************************987 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.16   5.6e+02      39      56 ..     200     227 ..     178     306 .. 0.57
   2 !   33.0   0.0   1.6e-11   5.7e-08      34     117 .]     336     413 ..     313     413 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.16
                     EETTEEEEEEEEEEEET..........T CS
  Acetyltransf_1  39 eedgeliGfisllkipd..........e 56 
                     ++ ++ iGf+s   +++          +
      CTQ29674.1 200 LKAEKMIGFCSSQGVYNqageivselfP 227
                     5557777777666666533333333332 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 1.6e-11
                     EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  34 gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vlaveedndaairlYeklGF 117
                      + ++++d++ i+++ l++ p+  ++ +++  +aV+p+yr +  G  Lle ++ +ar+ g+ k+ vl      +++i+ +++ GF
      CTQ29674.1 336 KFTIIQRDNTTIACAALYPFPE--EKIGEMACVAVHPDYRSSSRGEVLLERIAAQARQMGLSKLfVL-----TTRSIHWFQERGF 413
                     4666899***************..8************************************998677.....6789999988998 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.22   7.8e+02      36      48 ..     281     293 ..     254     324 .. 0.76
   2 !   24.6   0.0   7.2e-09   2.6e-05       4      75 ..     336     414 ..     333     415 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.22
                     GTTSSHHHHHHHH CS
  Acetyltransf_7  36 yrgkGiGraLlea 48 
                     + + GiG++++  
      CTQ29674.1 281 FSRDGIGTQIVME 293
                     6789*****9853 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 7.2e-09
                     EEEEEEETTEEEEEEEEEEES....TCTEEEEE-GGGTTSSHHHHHHH..HTT....SEEEEE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7   4 evfVaeddgkivGfialslld....aeitrlaVdpeyrgkGiGraLle..aae....kgiile.qlelnaekaikfYeklGFe 75 
                     ++ ++++d+  + ++al++      +e  ++aV+p+yr    G  Lle  a +     g+    +l  ++ ++i++++  GF+
      CTQ29674.1 336 KFTIIQRDNTTIACAALYPFPeekiGEMACVAVHPDYRSSSRGEVLLEriA-AqarqMGLSKLfVL--TT-RSIHWFQERGFT 414
                     5677889999999999999997555555559****************9542.12334443212222..22.78*********8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.28     1e+03      63      85 ..     281     303 ..     276     307 .. 0.82
   2 !   16.1   0.0   2.3e-06    0.0081      28     109 ..     333     416 ..     316     423 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.28
  Acetyltransf_10  63 yrgqGigkaLleaveeeaekdgi 85 
                      + + Gig++++++  e+++++ i
       CTQ29674.1 281 FSRDGIGTQIVMESAEQIRRATI 303
                      6799*******999999987655 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.3e-06
  Acetyltransf_10  28 egealllvaeeggkivGviel..rdgs..hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkav 109
                      e ++++++  ++++i+ ++ +   +++  +++ ++V+p+yr+   g+ Lle++ ++a+++g++ +l v  +   +  ++  GF++v
       CTQ29674.1 333 EIDKFTIIQRDNTTIACAALYpfPEEKigEMACVAVHPDYRSSSRGEVLLERIAAQARQMGLS-KLFVLTT-RSIHWFQERGFTPV 416
                      4466666666666666555333223336788888**************************999.8888655.45666677777665 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.2e-05      0.26      41     127 ..     334     415 ..     297     416 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.2e-05
                     TSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT.--EEEE--SSHHHHHTTT-EE CS
  Acetyltransf_9  41 esrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlaraleemreeg.qplsllfPssipiYrrfGyei 127
                      +++ ++ ++++ ++++al+p+       + k++  + Vav+p++r     + Ll+r  +++r++g  +l +l+ +si+ ++  G+ +
      CTQ29674.1 334 IDKFTIIQRDNTTIACAALYPFP------EEKIGEMACVAVHPDYRSSSRGEVLLERIAAQARQMGlSKLFVLTTRSIHWFQERGFTP 415
                     45666666666666666666664......335566788***************************83568889999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3189.94
//
Query:       CTQ29675.1  [L=106]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 846.34
//
Query:       CTQ29676.1  [L=614]
Description: exonuclease V (RecBCD complex), alpha chain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-32  111.9   0.6      1e-31  110.2   0.4    1.9  2  AAA_30           AAA domain
    2.7e-30  105.7   0.1      5e-30  104.8   0.1    1.5  1  AAA_19           AAA domain
      5e-20   72.1   0.0      9e-20   71.3   0.0    1.4  1  Helicase_RecD    Helicase
    3.1e-14   52.5   0.2    6.7e-14   51.5   0.2    1.6  1  UvrD_C_2         UvrD-like helicase C-terminal domain
    1.1e-10   41.6   1.0    3.5e-05   23.7   0.0    3.4  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    3.3e-09   36.9   0.1    5.3e-06   26.4   0.0    2.2  2  AAA_11           AAA domain
    8.4e-08   31.9   0.0    1.8e-07   30.9   0.0    1.6  1  SH3_13           ATP-dependent RecD-like DNA helicase SH3 dom
    6.7e-07   29.1   0.3    1.4e-06   28.1   0.3    1.4  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
    1.1e-05   25.8   0.0    2.5e-05   24.6   0.0    1.6  1  AAA_22           AAA domain
    0.00012   21.5   0.0    0.00037   19.8   0.0    1.9  1  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0037   17.5   0.1     0.0084   16.4   0.1    1.6  1  AAA_28           AAA domain
     0.0053   16.2   0.0       0.01   15.3   0.0    1.4  1  PhoH             PhoH-like protein
     0.0053   17.2   0.6       0.02   15.3   0.6    2.1  1  AAA_16           AAA ATPase domain
     0.0058   15.7   0.0      0.014   14.5   0.0    1.6  2  T2SSE            Type II/IV secretion system protein
     0.0072   15.7   0.1      0.014   14.8   0.1    1.4  1  UvrD_C           UvrD-like helicase C-terminal domain
  ------ inclusion threshold ------
      0.031   14.1   0.0      0.052   13.4   0.0    1.3  1  MukB             MukB N-terminal
      0.045   13.8   0.8       0.09   12.8   0.8    1.4  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
      0.093   13.2   0.0       0.21   12.0   0.0    1.6  1  AAA              ATPase family associated with various cellul
       0.11   12.1   0.0       0.19   11.4   0.0    1.3  1  SRP54            SRP54-type protein, GTPase domain
       0.15   12.6   0.1        4.6    7.8   0.1    2.9  2  AAA_18           AAA domain
       0.24    9.3   0.1        4.8    5.0   0.0    2.0  2  Herpes_Helicase  Helicase
       0.25   10.6   0.0       0.41   10.0   0.0    1.2  1  ATPase           KaiC
       0.26   11.2   0.4       0.58   10.1   0.4    1.5  1  NTPase_1         NTPase


Domain annotation for each model (and alignments):
>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.4   1.3e-34     1e-31       6     157 ..     158     336 ..     154     355 .. 0.79
   2 ?   -1.4   0.0       2.1   1.6e+03     149     177 ..     357     386 ..     340     392 .. 0.79

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 1.3e-34
      AAA_30   6 QaaavealltsgdrvavltGpAGtGKttalkal.reaweaag...grviglAptgkaAkvLaeelgi.................eastiakllkrlk.. 81 
                 Q+ a++   + ++r++v+ G++GtGKtt++++l +++++ +     r+ ++AptgkaA++L+e+lg+                 east+++ll ++   
  CTQ29676.1 158 QKVAAAV--ALTRRISVISGGPGTGKTTTVAKLlAALIQIEDsprCRIRLAAPTGKAAARLTESLGAalrklpltdaqkaliptEASTLHRLLGAQPgs 254
                 4444443..44445****************9994555544447889*****************999555556666666677777*********99999* PP

      AAA_30  82 .....grarlepg.tllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlvea..agigtaeLtevvRq 157
                      + a    + ++l+vDEa+m+d  ++ +l++a+ + + +vi++GD++QlasVeaG+vl d+++   +g ++a+ +e++R 
  CTQ29676.1 255 qrmryH-AGNPLHlDVLVVDEASMIDLPMMSRLIDALPA-HGRVIFLGDRDQLASVEAGAVLGDICAWasSGYTAARAQELTRL 336
                 999863.33344569**********************99.9************************8643345566666666665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.1
      AAA_30 149 aeLtevvRqke.seeraaalalregdaeea 177
                   L++ +R+ + s + ++a+a++ g  +e+
  CTQ29676.1 357 CLLQKSYRFGShSGIGSLARAVNAGARAEV 386
                 568999***77799*********9998844 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   0.1   6.4e-33     5e-30       3     144 ..     160     308 ..     158     310 .. 0.90

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 6.4e-33
      AAA_19   3 eave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae..............atTiHrlalldfddllte 86 
                  a++ al++++ ++ +GpGtGKT+++ + +a l+++++ +  +i l+a+tg+Aa +l+e+l a++++              a+T+Hrl  l++++  + 
  CTQ29676.1 160 VAAAvALTRRISVISGGPGTGKTTTVAKLLAALIQIEDSPRCRIRLAAPTGKAAARLTESLGAALRKlpltdaqkalipteASTLHRL--LGAQPGSQ- 255
                 55555********************************************************6666669********************..****9993. PP

      AAA_19  87 alelleeaeeekklqeeellivDEfqdvd.elqyrLlkallgekkklllvGDpdQliyv 144
                     +++ +  ++l + ++l+vDE++++d +++ rL++al+ ++  ++++GD+dQl +v
  CTQ29676.1 256 ---RMRY-HAGNPL-HLDVLVVDEASMIDlPMMSRLIDALPAHGR-VIFLGDRDQLASV 308
                 ...3333.678999.889***********************5555.**********986 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.0   1.2e-22     9e-20       1     119 [.     172     298 ..     172     326 .. 0.92

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 1.2e-22
  Helicase_RecD   1 vltAdRGRGKSaalGlalaaliaegk...snilvtapskenvktlfeflakglealglkeeekkkkaekaelrvr.......kqrieyiapdellk 86 
                    v+++++G+GK+++++++laali+ ++   ++i ++ap+ +++++l+e+l ++l++l+l++ +k+  +++a++ +r       +qr++y+a + l+ 
     CTQ29676.1 172 VISGGPGTGKTTTVAKLLAALIQIEDsprCRIRLAAPTGKAAARLTESLGAALRKLPLTDAQKALIPTEASTLHRllgaqpgSQRMRYHAGNPLHL 267
                    799********************999999**************************************999999999*******************9 PP

  Helicase_RecD  87 lkeqadllvvDEAAaiplpllkkl...lekfkrvvl 119
                         d+lvvDEA++i+lp++++l   l ++ rv++
     CTQ29676.1 268 -----DVLVVDEASMIDLPMMSRLidaLPAHGRVIF 298
                    .....89*****************555566667776 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.2   8.6e-17   6.7e-14       2      51 ..     537     583 ..     536     584 .. 0.87

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 8.6e-17
    UvrD_C_2   2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRAreklil 51 
                 a+a+t+hk+QGsef++  ++ p  +    + ++r+l+Yta+TRA+++l l
  CTQ29676.1 537 AWAMTVHKSQGSEFEHAALILPARSV---PLVTRELVYTAITRAKRRLSL 583
                 8******************6665555...5578**************987 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00061      0.47       2      36 ..     172     205 ..     171     226 .. 0.79
   2 ?    4.3   0.0     0.038        29      63     102 ..     267     307 ..     252     314 .. 0.83
   3 !   23.7   0.0   4.5e-08   3.5e-05     184     233 ..     538     584 ..     519     585 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00061
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtsliltvnrptaellt 36 
                      v++G pG GK+t + kll   li  +++p++ ++ 
       CTQ29676.1 172 VISGGPGTGKTTTVAKLLAA-LIQIEDSPRCRIRL 205
                      89****************88.66666666666665 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.038
  Viral_helicase1  63 gkililDEylllhaGyill.laalskaklvilfGDplQipf 102
                       ++l++DE+ + +  ++   + al+    vi +GD+ Q  +
       CTQ29676.1 267 LDVLVVDEASMIDLPMMSRlIDALPAHGRVIFLGDRDQLAS 307
                      689********99999988677888999**********765 PP

  == domain 3  score: 23.7 bits;  conditional E-value: 4.5e-08
  Viral_helicase1 184 evttvhevqGltfdkVtlvllketdlelisesrenllvAlTRhrkslvil 233
                       ++tvh  qG++f++  l+l  + +  l+  +re +++A+TR++++l ++
       CTQ29676.1 538 WAMTVHKSQGSEFEHAALILPAR-SVPLV--TRELVYTAITRAKRRLSLY 584
                      479******************77.44545..58************99876 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   6.8e-09   5.3e-06       6      74 ..     158     220 ..     153     236 .. 0.83
   2 !    8.3   0.0    0.0024       1.8     217     256 ..     266     307 ..     243     309 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 6.8e-09
      AAA_11   6 qreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerl 74 
                 q+ a + al+++ i++i+G PGtgKT+t+++ll++l+     + e s+  ri ++ap+ +A   l+e l
  CTQ29676.1 158 QKVAAAVALTRR-ISVISGGPGTGKTTTVAKLLAALI-----QIEDSPRCRIRLAAPTGKAAARLTESL 220
                 566666777777.5**********************4.....56899999*******999988887765 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0024
      AAA_11 217 kfdvviIDEAaqav..EpstliPlrlgakkvvLvGDpkQLpa 256
                   dv+++DEA++     +s li  + +  +v+ +GD  QL +
  CTQ29676.1 266 HLDVLVVDEASMIDlpMMSRLIDALPAHGRVIFLGDRDQLAS 307
                 789*********76114567887777779***********86 PP

>> SH3_13  ATP-dependent RecD-like DNA helicase SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   2.3e-10   1.8e-07       2      53 ..     459     507 ..     458     516 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.3e-10
      SH3_13   2 NkelqealnpkskkkkevkvggrvfrvgDkVmqlkNnydkgvfNGDiGiike 53 
                 N++l+++ln ++     +  +++ ++ g+++m  +N+  +g+fNGDiGi  e
  CTQ29676.1 459 NERLEQRLNRQR--AIALP-RHSRWYDGRPIMISRNDSALGLFNGDIGIALE 507
                 99*******997..44444.5666************************9655 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.3   1.8e-09   1.4e-06       7     100 ..     162     247 ..     157     251 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.8e-09
                    HHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT-HHHHHHHHHCTTSEEEEHHHH CS
  UvrD-helicase   7 eaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdderlrlalqnlseanisTlHsf 100
                    +a+a ++   +++ ++G+GKT+++a++ + li+ e     ri +   T kAa+ l e + +al+k          l++a++ l  ++ sTlH +
     CTQ29676.1 162 AAVALTRRISVISGGPGTGKTTTVAKLLAALIQIEDSPRCRIRLAAPTGKAAARLTESLGAALRKLP--------LTDAQKALIPTEASTLHRL 247
                    6788899999*************************999999***********************986........8889999999999999975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   3.2e-08   2.5e-05       4     115 ..     167     289 ..     165     307 .. 0.64

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.2e-08
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdllrellralglelka...............erlsseellealeqa 85 
                 t++i v+ G +GtGKTt++++ll  l   +++e  +++  ++ l+++t    + l + l  al     +               + l  +   +++   
  CTQ29676.1 167 TRRISVISGGPGTGKTTTVAKLLAAL---IQIE--DSPRCRIRLAAPTgkAAARLTESLGAALRKLPLTdaqkalipteastlhRLLGAQPGSQRM--- 257
                 68999********************9...3343..5555555555555225555555555555544444788999877444443333333333333... PP

      AAA_22  86 lrarav.....ielliiDEaqhlrseealeeLrsl 115
                   ++++       +l++DEa  +    +++ L + 
  CTQ29676.1 258 --RYHAgnplhLDVLVVDEASMI-DLPMMSRLIDA 289
                 ..2222566668*********99.88898888665 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.8e-07   0.00037       2      98 ..     169     276 ..     168     563 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.8e-07
     DUF2075   2 avvlVtGvaGtGKtvvllnllael..eddeeertavylsvNhplvlvlrealakke........ekkkkkeafeklssfinnlsef.....kkaeekke 85 
                 ++ +++G++GtGKt    +lla+l   +d+ + +  ++   ++  + l e l            +k  + ++++ l  +            + +++  +
  CTQ29676.1 169 RISVISGGPGTGKTTTVAKLLAALiqIEDSPRCRIRLAAPTGKAAARLTESLGAALrklpltdaQKALIPTEASTLHRLLG----AqpgsqRMRYHAGN 263
                 7889********************763344344444555556666666666655555545322244444444444444444....24555777788889 PP

     DUF2075  86 epkedvvivDEAh 98 
                   ++dv++vDEA 
  CTQ29676.1 264 PLHLDVLVVDEAS 276
                 99*********96 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.1e-05    0.0084       3      22 ..     172     191 ..     170     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-05
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                 vi+Gg++tGKTt++++L a 
  CTQ29676.1 172 VISGGPGTGKTTTVAKLLAA 191
                 8*************998765 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.3e-05      0.01       6     158 ..     155     305 ..     151     317 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
                 SHHHHHHHHHHHH-SEEEEE--TTSSTTHH.H.HHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TT..CHHHHH CS
        PhoH   6 tkeQkeylealkkndivfaiGpaGtGKtyl.a.valavealkkkkvkriiltrpaveageelGflpgdleekvdpylrplydaLkdllgae..kvekll 100
                 t  Qk ++ +  +  i ++ G  GtGKt   a + +a+ +++++   ri l+ p+ +a  +l+   g    k      pl+da k l+ +e  ++++ll
  CTQ29676.1 155 TDWQKVAAAVALTRRISVISGGPGTGKTTTvAkLLAALIQIEDSPRCRIRLAAPTGKAAARLTESLGAALRK-----LPLTDAQKALIPTEasTLHRLL 248
                 555666666666999************865132556777888888899*******99999999888855544.....599******9966511556666 PP

                 HTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE----- CS
        PhoH 101 ekgkievaplaymRGrTlndafvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqi 158
                  ++      ++y  G  l+  ++++DEA  +    m  ++  l  + +v+++Gd  q 
  CTQ29676.1 249 GAQ-PGSQRMRYHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPAHGRVIFLGDRDQL 305
                 555.5677888999****************************************9996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.6   2.6e-05      0.02      25     107 ..     169     261 ..     153     360 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.6e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekd........ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala......... 106
                 ++ ++sG +G+GK++ v +ll al +         +  + +gk+           l++ l +  l +  l++a++a+ +  + +l++ l+         
  CTQ29676.1 169 RISVISGGPGTGKTTTVAKLLAALIQIedsprcriRLAAPTGKAAAR--------LTESLGA-ALRKLPLTDAQKALIPTEASTLHRLLGaqpgsqrmr 258
                 7889*************999975444333343322111122222222........7777744.666666666777777777777777776444333333 PP

      AAA_16 107 ..a 107
                   a
  CTQ29676.1 259 yhA 261
                 331 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.8e-05     0.014      96     155 ..     125     194 ..     113     207 .. 0.71
   2 ?   -4.0   0.0       7.6   5.9e+03     188     222 ..     382     417 ..     375     419 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.8e-05
       T2SSE  96 R..kksakeltlddlgaeealk...........ekiaevlrkavrerglilvsGgTgsGKttllyallkeink 155
                 R  +++++ l++d+ + + +l+           +k+a++++     r + ++sGg g+GKtt++  ll+ + +
  CTQ29676.1 125 RffNEANRVLEMDEARLASTLNalfpatgetdwQKVAAAVALT---RRISVISGGPGTGKTTTVAKLLAALIQ 194
                 5555556666666666666666666666665557777777777...99999************9888876644 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 7.6
       T2SSE 188 fadllraaLRlrPDrimvGEiRdketlei.lkAvnT 222
                 +++ ++a+LR+  D i +  +  +e +e+ l A++ 
  CTQ29676.1 382 ARAEVKATLRQPFDDIALHPLSTTEEYEAmLGAAQQ 417
                 566789999998888887776666666666666665 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.8e-05     0.014     287     344 ..     537     583 ..     507     588 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 287 ipiiTiHqAKGlEFdvVflagleegtfPsyrskkekrleEEkRlfYVaiTRAkkrLfi 344
                    +T+H++ G+EF+   l+      +P  +          + l Y aiTRAk+rL +
  CTQ29676.1 537 AWAMTVHKSQGSEFEHAALIL-PARSVPLVT----------RELVYTAITRAKRRLSL 583
                 5569***********999986.778888333..........569************76 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.6e-05     0.052      21      68 ..     163     212 ..     155     226 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.6e-05
                 EE-HHHHHHHHHS--SHHHHHHHHHHHHHHS..--TTT------------ CS
        MukB  21 tfdldelvttlsGgnGaGksttmaafvtali..PdlsllhfrntteaGat 68 
                    l + +  +sGg G+Gk+tt+a +++ali   d  + + r  + +G +
  CTQ29676.1 163 AVALTRRISVISGGPGTGKTTTVAKLLAALIqiEDSPRCRIRLAAPTGKA 212
                 556888999*********************72247777777766666655 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.8   0.00012      0.09       1      24 [.     170     193 ..     170     196 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
                 EEEEESSTTSSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   1 iaiastkGGvGKTtlaanLarala 24 
                 i+++s+  G+GKTt++a+L++al 
  CTQ29676.1 170 ISVISGGPGTGKTTTVAKLLAALI 193
                 6899*****************996 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00027      0.21       3      25 ..     173     199 ..     171     279 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00027
                 EESSTTSSHHHHHHHHHHHH....THE CS
         AAA   3 lyGppGtGKTllakavakel....gve 25 
                 ++G pGtGKT+++  +   l    +++
  CTQ29676.1 173 ISGGPGTGKTTTVAKLLAALiqieDSP 199
                 78*******998776666643333233 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00024      0.19       4      26 ..     171     193 ..     168     213 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
                 EEEEESTTSSHHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaallk 26 
                  ++ G  G+GKTtt+aKL a l 
  CTQ29676.1 171 SVISGGPGTGKTTTVAKLLAALI 193
                 5788999**********977654 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.76   5.9e+02      27      66 ..     112     150 ..      90     160 .. 0.86
   2 ?    7.8   0.1    0.0059       4.6       3      21 ..     173     192 ..     172     314 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.76
      AAA_18  27 nlrdvakenglllevdpealdeskrldedkldklldalee 66 
                  l+ +++++ ++  +++e  ++ +++de +l++ l+al  
  CTQ29676.1 112 YLNRMWRNELTVARFFNE-ANRVLEMDEARLASTLNALFP 150
                 578899999999999999.999********9999999865 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0059
      AAA_18   3 ltGtpGvGKtt.lakeLskr 21 
                 ++G pG+GKtt +ak L+ +
  CTQ29676.1 173 ISGGPGTGKTTtVAKLLAAL 192
                 89*******86266666554 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.048        38      57      83 ..     166     192 ..     116     195 .. 0.76
   2 ?    5.0   0.0    0.0062       4.8     732     783 ..     538     591 ..     535     602 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.048
  Herpes_Helicase  57 lPFsaylitGtAGaGkstsiqalaenl 83 
                      l  ++ +i+G  G+Gk+t+++ l ++l
       CTQ29676.1 166 LTRRISVISGGPGTGKTTTVAKLLAAL 192
                      777889**************9998766 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0062
  Herpes_Helicase 732 lamtiaksqGlslekvAicFgnh..knlklssvYvalsRatdseflvmdvnPLr 783
                       amt+ ksqG  +e+ A+   +     + ++ vY a+ Ra     l  d   L+
       CTQ29676.1 538 WAMTVHKSQGSEFEHAALILPARsvPLVTRELVYTAITRAKRRLSLYADEQVLS 591
                      59***************999877456789999********98877777766665 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00052      0.41      19      45 ..     168     194 ..     165     236 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00052
      ATPase  19 grvvlitGepGtGKtifalqFlikgae 45 
                 +r+  i+G+pGtGKt+ +++ l   ++
  CTQ29676.1 168 RRISVISGGPGTGKTTTVAKLLAALIQ 194
                 68899***********99987766555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.4   0.00074      0.58       3      23 ..     172     192 ..     171     196 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00074
                 EEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlell 23 
                 +i+G pG+GKtT v k+l +l
  CTQ29676.1 172 VISGGPGTGKTTTVAKLLAAL 192
                 699*************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 4002.29
//
Query:       CTQ29677.1  [L=1178]
Description: exonuclease V (RecBCD complex), beta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-62  209.8   0.0    1.5e-61  208.6   0.0    1.5  1  UvrD-helicase   UvrD/REP helicase N-terminal domain
    5.9e-19   68.6   0.0    5.6e-17   62.2   0.0    2.6  1  UvrD_C          UvrD-like helicase C-terminal domain
    8.8e-19   68.3   0.0      1e-17   64.8   0.0    2.6  2  AAA_19          AAA domain
    2.4e-07   30.5   0.3     0.0071   16.1   0.0    2.6  2  UvrD_C_2        UvrD-like helicase C-terminal domain
    8.8e-06   25.8   0.1    7.5e-05   22.8   0.1    2.6  2  PDDEXK_1        PD-(D/E)XK nuclease superfamily
    0.00073   19.3   0.1       0.65    9.7   0.0    2.5  2  AAA_30          AAA domain
  ------ inclusion threshold ------
      0.015   15.6   0.4        5.9    7.2   0.0    3.0  3  AAA_22          AAA domain
      0.029   14.2   0.0        0.1   12.4   0.0    1.8  2  AAA_11          AAA domain
       0.14   11.9   0.0       0.33   10.7   0.0    1.5  1  Ig_mannosidase  Ig-fold domain


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.6   0.0   7.6e-65   1.5e-61      12     313 ..      15     436 ..       4     438 .. 0.82

  Alignments for each domain:
  == domain 1  score: 208.6 bits;  conditional E-value: 7.6e-65
                    -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS........STGGGEEEEESSHHHHHHHHHHHHH................HHHHCCHHCTT-H... CS
  UvrD-helicase  12 lggpilveAsAGsGKTfvlaerilrlikeee........iepdrilvvTFTnkAaeElkeRiee................alkkaeqessdde... 80 
                    l g+ l+eAsAG+GKTf++a+++lrl+   +        i+++++lvvTFT++A+eEl+ Ri++                 l +a+  ++ d+   
     CTQ29677.1  15 LIGERLIEASAGTGKTFTIAALYLRLLLGLGgeaaypraISVEELLVVTFTEAATEELRGRIRSnihelriaclrgesdnPLYSALLAEIADKdda 110
                    56889**********************98775667777788888********************99999999999999994444444444444566 PP

                    ..HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT......................SHTTTEEECHHHHH......................... CS
  UvrD-helicase  81 ..rlrlalqnlseanisTlHsfcqkilkkeanrig......................ldpnfrildeedee......................... 127
                       l la+++++ea+++T+H+fcq++l  +a+++g                      +                                      
     CTQ29677.1 111 akTLLLAERQMDEAAVFTIHGFCQRMLSLNAFESGmlfeqqliedesrlryqacadfW------------Rrhcypltrdiaavihdvwkgprdll 194
                    789********************************76666666666666666666662............04444444444446777777777777 PP

                    ..HCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCH..................HHHCCCHHHHHCHHHHHHHHHHHTTCCTTHHCHSS CS
  UvrD-helicase 128 ..dlkqqellkelleksaddslnldkkkleklikelsksrnik..................keelslskskaeelrelvskakekqlspkelkkaf 203
                        ++++  +  l++ +  +++l++++ +  ++  s++++++                  k+++ ++ +++e+++++ ++ + + + p  l+k  
     CTQ29677.1 195 ksLDRWLQGEAPQLKSPPAPNETLAERHQQIIARIDSLKQQWReqvgeiegvlensgldrrKFNRGNQGKWMEKVNAWAQEETLSYQLPDALEKFA 290
                    665567777777777877777888888888888889999999999999999999999999999999999999999999999999999998888866 PP

                    ................................TSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHH..CHHHHHHHHHHSSEEEESSG CS
  UvrD-helicase 204 ................................ekasdlqkkiaeflkeyqeqkkeenalDfsdllhallellee..neelaealrerykeiliDEy 265
                                                      +  l +++ e+     ++k+++  l f+d+l++l e+l+   +e+la+a+r+r+++++iDE+
     CTQ29677.1 291 qsfllertkaggeppvhplfsavesllassltLTDLVLARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRGdsGETLASAIRQRFPVAMIDEF 386
                    8899998888777888888888888877766555556666777777777777777777***************98999****************** PP

                    GG-BHHHHHHHHHHHTTTTT..EEEEE-GGG--GGGGTB-THHHHHHHHH CS
  UvrD-helicase 266 QDTnkiQyrilkllasghee..lfmvGDpkQsIYgFRgAdielflkkkkd 313
                    QDT+++Qyri+++++++++e  l+++GDpkQ+IY+FRgAdi++++k++ d
     CTQ29677.1 387 QDTDPQQYRIFRRIWRRQPEtaLLLIGDPKQAIYAFRGADIFTYMKARGD 436
                    *********************************************99866 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   2.8e-20   5.6e-17      68     338 ..     547     809 ..     441     811 .. 0.67

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 2.8e-20
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  68 kneklediavLvRsnkdadkiskaLkkegipfnvvd.eekfFkreeikdilaylkllankqdkialkrilkrlvlgigkatveriseelkklglsltDf 165
                 +  + +di+vLvR+  +a ++ +aL+++gip + ++   + F++ e +++l +l+ ++ ++++++l+  l + + g++   +e++              
  CTQ29677.1 547 RPVQASDITVLVRNRLEAAQVREALQTLGIPSVYLSnRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSMFGLTALDIENL-------------- 631
                 555789**************************99997899*********************************************.............. PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 166 ikedtleygeeFieliraleeknlelllkkiektaeerqalvskyadlfkelaeklaelkekseskrkkee...klenlreLysllkelekkeeeeeve 261
                  ++d+    + +  l+++++e ++             rq+          ++ + l + ++ +e+  + +    +l  +  +++ll+e+     + e+e
  CTQ29677.1 632 -NQDE----QAWDALVEEFSEYRQI-----------WRQR-------GVMPMLRALMTARHIAENLLATRGgerRLTDILHISELLQEAAS---QLESE 704
                 .3333....3344444555554443...........1111.......11233333333333333333222211144444444444444444...44444 PP

                 xx.....xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxx...................xxxxxxxx RF
      UvrD_C 262 ek.....lneileiatLseseleeskkk.ekipiiTiHqAKGlEFdvVflagleegtfP.......syrskk...................ekrleEEk 328
                 ++      ++i e  + ++s++ +++++   ++i+TiH++KGlE++ V l  ++  +              +                    +rl+E+ 
  CTQ29677.1 705 HAlvrwlAQHIAEPDSNAASQQMRLESDkHLVQIVTIHKSKGLEYPLVWLPFIARFRKQdqafyhdR----EtfaavldlgqdeaslelaeAERLAEDL 799
                 4412222444444444444444444444599*****************7765432221123333440....2446666666666666677789****** PP

                 xxxxxxxxxx RF
      UvrD_C 329 RlfYVaiTRA 338
                 Rl+YVa+TRA
  CTQ29677.1 800 RLLYVALTRA 809
                 *********9 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   5.1e-21     1e-17      14     146 .]      20     423 ..      17     423 .. 0.93
   2 ?   -0.5   0.0       0.7   1.4e+03      52      78 ..     721     754 ..     693     805 .. 0.71

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 5.1e-21
      AAA_19  14 lvtaGpGtGKTrvlkhiv.allvelggvkp.......eeillvaftgrAakelrerlaalgae.................................... 68 
                 l+ a +GtGKT ++ +   +ll+ lgg+++       ee+l+v+ft+ A++elr r+++  +e                                    
  CTQ29677.1  20 LIEASAGTGKTFTIAALYlRLLLGLGGEAAypraisvEELLVVTFTEAATEELRGRIRSNIHElriaclrgesdnplysallaeiadkddaaktlllae 118
                 789***********99761555566665559999999********************777666889999999999999999999999999988888888 PP

      AAA_19  69 .......atTiHrlal................................................................................... 77 
                          TiH++                                                                                     
  CTQ29677.1 119 rqmdeaaVFTIHGFCQrmlslnafesgmlfeqqliedesrlryqacadfwrrhcypltrdiaavihdvwkgprdllksldrwlqgeapqlksppapnet 217
                 8888887778888876*********************************************************************************** PP

      AAA_19  78 ................................................................................................... 77 
                                                                                                                    
  CTQ29677.1 218 laerhqqiiaridslkqqwreqvgeiegvlensgldrrkfnrgnqgkwmekvnawaqeetlsyqlpdalekfaqsfllertkaggeppvhplfsavesl 316
                 *************************************************************************************************** PP

      AAA_19  78 ................................ldfddlltealelle...eaeeekklqeee.llivDEfqdvdelqyrLlkallgek..kklllvGDp 138
                                                 l+fdd l+   e+l+    ++  + +++++ + ++DEfqd+d++qyr+++++  ++  + lll+GDp
  CTQ29677.1 317 lassltltdlvlaramveirdavarekrrrgeLGFDDMLSRLDEALRgdsGETLASAIRQRFpVAMIDEFQDTDPQQYRIFRRIWRRQpeTALLLIGDP 415
                 ***********************************************9884456688989999*********************98876456******* PP

      AAA_19 139 dQliyvfr 146
                 +Q+iy+fr
  CTQ29677.1 416 KQAIYAFR 423
                 ******97 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.7
      AAA_19  52 grAakelrerlaalgaeatTiHrlal.......l 78 
                 + A +++r + ++ ++++ TiH+          l
  CTQ29677.1 721 NAASQQMRLESDKHLVQIVTIHKSKGleyplvwL 754
                 56888999999999999*****884434444440 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.6e-06    0.0071       4      26 ..     738     758 ..     735     769 .. 0.79
   2 !   11.7   0.1   8.7e-05      0.17      27      45 ..     791     809 ..     786     815 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.6e-06
    UvrD_C_2   4 altihkaQGsefpaVivfdpdla 26 
                 ++tihk++G+e+p V +  p  a
  CTQ29677.1 738 IVTIHKSKGLEYPLVWL--PFIA 758
                 89*************98..5544 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 8.7e-05
    UvrD_C_2  27 aarmgelrrrlLYtavTRA 45 
                 +a++ ++  rlLY+a+TRA
  CTQ29677.1 791 EAERLAEDLRLLYVALTRA 809
                 555566799*********9 PP

>> PDDEXK_1  PD-(D/E)XK nuclease superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.1   2.1e+03     167     228 ..     513     574 ..     506     593 .. 0.83
   2 !   22.8   0.1   3.8e-08   7.5e-05      36     197 ..     948    1140 ..     931    1170 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.1
    PDDEXK_1 167 glQlllYllalaegeelkeegepagalylrleepkvkdeevvkkmalteeeleallqeleel 228
                 + Q+++ +l + +  +++ +g++++al++r e  +  +++ ++  + ++ e +++++ l++l
  CTQ29677.1 513 DYQTFMAQLCATQIRDWLSAGQQGRALLWRGETSRPVQASDITVLVRNRLEAAQVREALQTL 574
                 4599999999999999999999********97777778888888888888888888888876 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 3.8e-08
    PDDEXK_1   36 lGtlvHaaleefyewkkldke.dleelleeaveelwpellleeeilessarlrylaeklkevleklve.rlaeeleakrgfrpvalelefg...... 124 
                   Gt++H+++ee+  +++++++  +e+l    ++++w+   +            +l + lk +l  + + +l++ l+a+++  ++a+           
  CTQ29677.1  948 PGTFLHSLFEELDFTQPVPEGwMAEKLQLSGFDAQWAP--VLT---------DWLGGVLKTRLPGP-DiALNQ-LAARDKQVEMAF----Ylpiaql 1027
                  48888888887766445555554444444455555555..222.........55555555555555.213333.333333222222....2222234 PP

    PDDEXK_1  125 .......................g.ekvr..LkGriDrvddkegelriiDyKtgsappkskelaelkegl.............QlllYllalaeg.e 181 
                                         + ++vr  LkG+iD+v ++eg+++++DyK++       e++e ++++             Q  lY lal++   
  CTQ29677.1 1028 ltaerldalirqydplsadtpplDfRQVRgmLKGFIDLVFRHEGRYYLLDYKSNW----LGEDREAYTRPameqamrahrydlQYQLYSLALHRYlR 1120
                  4455555555555566666667744455555*********************554....222233333334444444444555*********99843 PP

    PDDEXK_1  182 elkeege......pagalylrl 197 
                   +++  +       +g++yl+l
  CTQ29677.1 1121 HRLA--DydydrhFGGVIYLFL 1140
                  3332..1336665666666665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00033      0.65      22      64 ..      20      74 ..      17     122 .. 0.81
   2 !    6.8   0.0    0.0025         5      85     157 ..     373     449 ..     338     461 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00033
      AAA_30 22 vltGpAGtGKttalkal.reaweaag...........grviglAptgkaAkvLae 64
                ++++ AGtGKt++++al  +++   g           +++++++ t++a ++L+ 
  CTQ29677.1 20 LIEASAGTGKTFTIAALyLRLLLGLGgeaaypraisvEELLVVTFTEAATEELRG 74
                7899***********9965666555457888888888888888888888888875 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0025
      AAA_30  85 rlepg.tllivDEagmvdtkqlaallkaaeka.gakvilvGDerQlasVeaG.gvlrdlveaagi..gtaeLtevvRq 157
                 +++++  + ++DE   +d +q + + ++ +++ ++ ++l+GD++Q     +G ++++ + +a+g    + +L++++R 
  CTQ29677.1 373 AIRQRfPVAMIDEFQDTDPQQYRIFRRIWRRQpETALLLIGDPKQAIYAFRGaDIFTYM-KARGDvaAHYTLDTNWRS 449
                 4555667999************999999999636***********75555551455555.444332366677777775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.013        27      11      89 ..      22     107 ..      20     128 .. 0.62
   2 ?    7.2   0.0     0.003       5.9      80     131 ..     368     415 ..     328     419 .. 0.81
   3 ?   -3.2   0.1       4.6   9.2e+03      68      88 ..     698     717 ..     676     737 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.013
      AAA_22  11 tGesGtGKTtllrrlleqldeeakaee......erpevvfvtlpsstsskdllrellralglelka..erlsseellealeqalrar 89 
                  + +GtGKT++++ l  +l      e          e++ vt ++    ++l+ ++ +++++ + a  ++ s   l++al   + ++
  CTQ29677.1  22 EASAGTGKTFTIAALYLRLLLGLGGEAaypraiSVEELLVVTFTEAA-TEELRGRIRSNIHELRIAclRGESDNPLYSALLAEIADK 107
                 5679********99999886544444455444433333355555555.667777777777766666655555555555555555555 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.003
      AAA_22  80 ealeqalraravielliiDEaqhlrseealeeLrsllnlsrkgvqliLvGtp 131
                 e+l+ a+r+r+   + +iDE+q    +++++ +r+++  ++  ++l+L+G p
  CTQ29677.1 368 ETLASAIRQRFP--VAMIDEFQDT-DPQQYRIFRRIWR-RQPETALLLIGDP 415
                 556666666666..**********.9*******99998.8999*******99 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.6
      AAA_22  68 lkaerlsseellealeqalra 88 
                 ++    s+++l++ l+q++ +
  CTQ29677.1 698 ASQ-LESEHALVRWLAQHIAE 717
                 222.44445555555555543 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.1e-05       0.1      20      85 ..      19      82 ..       5     137 .. 0.83
   2 ?   -2.2   0.0       1.5   2.9e+03     245     253 ..     409     417 ..     403     417 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.1e-05
      AAA_11 20 tliqGPPGtgKTktivellsqllsr...rkseeeksakpriLvCapSNaAvDellerllrglldsegek 85
                +li+   GtgKT+ti++l+ +ll     ++   ++   +++Lv + ++aA  el  r+ +     +  +
  CTQ29677.1 19 RLIEASAGTGKTFTIAALYLRLLLGlggEAAYPRAISVEELLVVTFTEAATEELRGRIRS-----NIHE 82
                5899999***************9444443467899**********************988.....3333 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
      AAA_11 245 vvLvGDpkQ 253
                 ++L+GDpkQ
  CTQ29677.1 409 LLLIGDPKQ 417
                 68******9 PP

>> Ig_mannosidase  Ig-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016      0.33       9      39 ..     479     510 ..     473     516 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
  Ig_mannosidase   9 kvtevsggfkvtlsa.davAlfVwLelsgvdg 39 
                     k  ++++g+++t+ a d +A+ VwL +++++g
      CTQ29677.1 479 KAAAKNKGLRFTVDAaDVPAMNVWLMPGDTVG 510
                     5566789******888*********9988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 7488.83
//
Query:       CTQ29678.1  [L=961]
Description: protease III [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-51  175.9   1.8    1.8e-51  175.1   1.8    1.4  1  Peptidase_M16_M  Middle or third domain of peptidase_M16
    2.3e-38  131.5   0.0    4.5e-38  130.6   0.0    1.5  1  Peptidase_M16    Insulinase (Peptidase family M16)
    2.2e-32  112.6   0.0    7.4e-17   62.0   0.0    3.1  3  Peptidase_M16_C  Peptidase M16 inactive domain


Domain annotation for each model (and alignments):
>> Peptidase_M16_M  Middle or third domain of peptidase_M16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.1   1.8     3e-55   1.8e-51       1     274 [.     400     673 ..     400     677 .. 0.96

  Alignments for each domain:
  == domain 1  score: 175.1 bits;  conditional E-value: 3e-55
  Peptidase_M16_M   1 FrFkekeepsdyvsslaenmqkyppedvlsgpylleeydpelikellssLtpenarivlvske..tdekekwygteYsvekiseelleewksae 92 
                      Fr+ + ++ +dyv++la +m ++p+e++l   ++ ++ydp++ik+ l+++tp+nari+++s++  +++++ +++++Y+v+kise++ ++w++ +
       CTQ29678.1 400 FRYPSINRDMDYVEWLADTMIRVPVEHALDVVNIADQYDPQAIKDRLAMMTPQNARIWYISPQepHNKTAYFVDAPYQVDKISEQTFADWQHKS 493
                      9*************************************************************6344899**********************888 PP

  Peptidase_M16_M  93 eneeLhLPepNpFiptdfslkkesesepakaPelirdtelvrlWykkDdtF.kvPkasvrlklrsplasksprnavltelfvellkdslneyly 185
                      +  +L+LP+ Np+ip+df+l k   +++ ++P+li d++++r+ y + ++F   Pka ++l lr+p+a +s+r +v+  l   l   +l +++ 
       CTQ29678.1 494 QAIQLQLPALNPYIPDDFTLIKS--DKAWPHPQLILDEPTLRVVYAPSQYFaSEPKADISLVLRNPQAMDSARRQVMFALNDYLAGIALDQLSN 585
                      8889****************633..4899**********************999**************************************** PP

  Peptidase_M16_M 186 dAelAglsyslssskeglelsvsGYndklpvLlekvleklknfeikedrFevikekllrelknfklekpyqqarellsslleekawtle 274
                      +A + g+s+s  +++ gl ++++GY+++lp L+  +l+   + +++e+++e++k  + + ++ +++ k y qa   ++++ + ++++ e
       CTQ29678.1 586 QAAVGGISFSTGANN-GLMVNANGYTQHLPALFSDLLQGYFSYTPTEEQLEQAKSWYAQMMDSAEKGKAYDQAIMPIQMVSQVPYFQRE 673
                      **********99776.************************999*********************************9999999999876 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.0   7.5e-42   4.5e-38       1     148 [.      54     191 ..      54     192 .. 0.98

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 7.5e-42
                    EEEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCH.HHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHH CS
  Peptidase_M16   1 rvalesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkyps.nklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvf 95 
                    +v+l+sdp+a +s  +lvv +GS+++p d +GlAH+lehm ++g++kyp+ ++lae+l+ +Ggs+nA+t   +t++y+ev++++l++a+d+lad +
     CTQ29678.1  54 VVLLVSDPQAVKSLSALVVPVGSLQDPADHQGLAHFLEHMTLMGSQKYPQpDSLAEFLKLHGGSHNASTAPYRTAFYLEVENDALDGAVDRLADAI 149
                    5899******************************************************************************************** PP

                    HSBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS-T CS
  Peptidase_M16  96 kaplleesevererkvvekeveavdaepekvveenlhaaayrekalgrsllgp 148
                    +apll++++ +r       e++av+ae     +++++++ +r+++++ ++++p
     CTQ29678.1 150 AAPLLDKKYADR-------ERNAVNAEL----TMARTRDGMRMAQVSAETINP 191
                    ************.......*********....9*************9999998 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   1.2e-20   7.4e-17       4     179 ..     215     392 ..     214     396 .. 0.90
   2 ?    0.3   0.0     0.099   5.9e+02      34     119 ..     479     584 ..     473     638 .. 0.73
   3 !   46.2   0.0   8.6e-16   5.1e-12       1     181 [.     681     856 ..     681     858 .. 0.81

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 1.2e-20
                      HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHTTHH CS
  Peptidase_M16_C   4 redlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpskendeddl 97 
                      ++ l++f++++Y+++ m+ +i+++ +   l +++ ++fg+++++  + ++ t++ +t+a++   + +++ ++  +  l + f+  + ++ +++ 
       CTQ29678.1 215 LDALHTFRDSWYSANLMKAVIYSNKPLPALARMAADTFGHVPNRQISRPEITVPVVTDAQKGIIIHYVPAMP--RKVLRVEFRIDNNSDRFRSK 306
                      589****************************************98787888888888666666666666666..888888888888888***** PP

                      HHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEES..SCEEEEEEEEEECT...THHHHHHHHHHHHHHHHHHTS-HHHHHHH CS
  Peptidase_M16_C  98 alavlntlLgggmesrLytnlrekeglaysvsafndsyr..dsglfgisatadpe...nveevvevilkelrklkkeglteeelera 179
                        ++  +l+g+   + L + l+ k+gla+++ a++d     +sg++ isat++++   + +ev ++i+++l+ l+++g++++ +++ 
       CTQ29678.1 307 TDELVTYLIGNRSPGTLSDWLQ-KQGLAEGIRADSDPVVngNSGVLAISATLTDKglaHRDEVTAAIFSYLDLLRTQGIDKRYFDEL 392
                      **********************.***********7744478****************************************999975 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.099
                      HHHHHHHHTTSTHHSH.....................CSGSCTSSSSSGGGSSEEEEEEEES...SSSSEEEEEEEEEECTCTHTTHHHHHHHH CS
  Peptidase_M16_C  34 vkliekyfgdlkaska.....................ppakptgepltpatlkkppvvlkkl...deeqahlslafegpskendeddlalavln 103
                       k+ e++f d++++++                     ++   ++++l   +++ + v+ + +    e++a +sl ++ p+  +  +  ++  ln
       CTQ29678.1 479 DKISEQTFADWQHKSQaiqlqlpalnpyipddftlikSDKAWPHPQLILDEPTLRVVYAPSQyfaSEPKADISLVLRNPQAMDSARRQVMFALN 572
                      5677899999998887899999888888888888887333344444444556666666666677655689999999999999999999999999 PP

                      HHHHSSTTSHHHHHHH CS
  Peptidase_M16_C 104 tlLgggmesrLytnlr 119
                      ++L g       ++l 
       CTQ29678.1 573 DYLAGI----ALDQLS 584
                      988887....444444 PP

  == domain 3  score: 46.2 bits;  conditional E-value: 8.6e-16
                      CH-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHT CS
  Peptidase_M16_C   1 sltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpskende 94 
                      s+t++++ +++ +  +  + +l ++G+ + + +  l+++   +l+a    ++  +++ ++++ ++++  + +k   +++  +la  + +     
       CTQ29678.1 681 SITLKEVLDYRANLKTRGRPELMVIGNMTADAATTLARQIQQQLGA----DGNEWCRNKDVVVNRQQLAIFNKAG-NSTDSALAAVFAPP--NV 767
                      69*******************************************9....6788888888555544444444443.55555555555555..45 PP

                      THHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHH.....HHHHHHHHHHHHHHHTS-HHHHHHHHH CS
  Peptidase_M16_C  95 ddlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenvee.....vvevilkelrklkkeglteeelerakn 181
                      d +     +tlLg+ +  ++y++lr++e+l+y v+af ++    + +g+++ +++ + ++     + ++++ + ++  +  + +ee+ + ++
       CTQ29678.1 768 DEFSSTAASTLLGQIIQPWFYNQLRTEEQLGYAVFAFPMNVG--RQWGMGFLLQSSDKQPaflwqRFQAFFPTAEAKLRA-MKPEEFAQLQQ 856
                      889999999999999999*******************88666..899999999988777777777999999999999998.89998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 6506.88
//
Query:       CTQ29679.1  [L=1125]
Description: exonuclease V (RecBCD complex), gamma chain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.5e-299  994.9   1.0   3.3e-299  994.5   1.0    1.1  1  Exonuc_V_gamma   Exodeoxyribonuclease V, gamma subunit
    1.3e-68  230.7   6.2    5.6e-68  228.7   6.2    2.2  1  RecC_C           RecC C-terminal domain
  ------ inclusion threshold ------
       0.13   13.0   1.5          1   10.1   0.0    3.3  3  Vir_act_alpha_C  Virulence activator alpha C-term


Domain annotation for each model (and alignments):
>> Exonuc_V_gamma  Exodeoxyribonuclease V, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  994.5   1.0  5.5e-303  3.3e-299       1     768 []       1     806 [.       1     806 [. 0.97

  Alignments for each domain:
  == domain 1  score: 994.5 bits;  conditional E-value: 5.5e-303
                     -EEEEEESSHHHHHHHHHHHHHHS--SSSS--EEEE-SSHHHHHHHHHHHHHTTS-BESEB---HHHHHHHHHHHHSSS--SS-TT-HHHHHHHH CS
  Exonuc_V_gamma   1 mltlyqSnrlevLaellakllreeplanpfepeiilvqskgmarwLklelAekkGiaanlefplpasflwqllkavlpevpeespfskealtWrl 95 
                     ml++y+Snrl+vL +l+  ++++++l++pf+ e++lvqs gma+wL+++lA ++Giaan+efplpasf+w+++ +vl+++p es+fsk+++ W+l
      CTQ29679.1   1 MLRVYHSNRLDVLEALMEFIVERQRLDDPFQAEMVLVQSTGMAQWLQMTLAARFGIAANIEFPLPASFIWDMFVRVLKDIPGESAFSKQSMSWKL 95 
                     9********************************************************************************************** PP

                     HHHHHHHTSSSSTHHHHHHTTSS-SSHHHHHHHHHHHHHHHHHTTSSHHHHHHHCTT..---TT--TTHHHHHHHHHHHHHHHHHTT-----SHC CS
  Exonuc_V_gamma  96 mrlLpelleeeefaplrkylskdsdqlklyqLaekiAdlFdqYlvyRpdwlaaWeageekklakleederWQaiLWralvaelkeekqeiqaran 190
                     m+lLp+ lee++f  lr+yls+d d++kl+qLa+++Adl+dqYlvyRp+wl +Weag  ++++ l + ++WQa LW+alv ++ e  q + +ran
      CTQ29679.1  96 MTLLPQHLEEDDFILLRQYLSDDGDKRKLFQLAARVADLYDQYLVYRPEWLMRWEAG--QRVEGLGDAQQWQAPLWQALVSYTAELGQPQWHRAN 188
                     *********************************************************..************************************ PP

                     CHHHHHHHHHSSTT--TS--SEEEEES-----HHHHHHHHHHTTTSEEEEEEE-S-SS--S--S-TTTSTT......................HS CS
  Exonuc_V_gamma 191 lheeflealakkekklkklPkrifvFgisslppsylevLkalskhidVhlfllnPcreyWgdivdrkqllr......................eq 263
                     l+++f+ +l+k++++++ lP+r+f+ gis+lpp yl++L+al+kh+dV+++++nPcr yWgdi+d+  l++                      + 
      CTQ29679.1 189 LYQRFISTLEKADEPPAGLPSRVFICGISALPPVYLQALQALGKHVDVYVLFTNPCRYYWGDIKDPAFLAKllsrqrrhhrearalplfrdteQA 283
                     *****************************************************************9999999999999***********999555 PP

                     STT-SSSSBSS-SSHHHHHHTHHHHHHHHHHTT-.SSEEEEEE-----S-SHHHHHHHHHHH............HHH--TTSEE--TT--SSEEE CS
  Exonuc_V_gamma 264 leeeeedelleegnpLLaslGkqgrdfldlleeleeeskeidlfeeeeeeslLqqlqadile............kaedeekklaleekDrSiqih 346
                         +++  +++gnpLLas+Gk+grd+++ll+ l e  +e d+f++  + +lL++lq+dile                ++ k+ l  +DrS++ih
      CTQ29679.1 284 PGLFNDAGEQDVGNPLLASWGKLGRDYIYLLAGL-ERYEELDAFVDIAPYNLLHNLQSDILElrnaavagqsaeAFAHSRDKRPLTLDDRSLSIH 377
                     5566777788999*********************.99**********************************9876666777888*********** PP

                     EESSHHHHHHHHHHHHHHHHHHSTT--GGGEEEEESTHHHHHHHHHHHTSCSTTTT---EEE-SEETGGGHHHHHHHHHHGGGGG----HHHHHH CS
  Exonuc_V_gamma 347 sChsplREvevLhdqLlalleadptlqprDilVmvpdieayaPyIeaVFgaaederklpysiaDrsakeespllaaflelLeLpesrftasevld 441
                     +Chsp+REvevLhd+Lla+leadptl+prDi+Vmv+di++y+PyI+aVFgaa+++r lp++i+Dr+a+e++p+l+af++lL+Lp+srf  ++vl+
      CTQ29679.1 378 VCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDSYSPYIQAVFGAASGDRWLPWAISDRRARESHPVLQAFITLLSLPDSRFASEDVLA 472
                     **************************************************99******************************************* PP

                     HTTSHHHHHHTT--HHHHHHHHHHHHHHT--S-SSHHHHHHTT----SSSSHHHHHHHHHHHHSS-STT--SSS----TTS-SCTHHHHHHHHHH CS
  Exonuc_V_gamma 442 lLevpavarrfgldeedleqlrewlaeagirwGldaehreelglpadeqnswrfgLdRlllGyalgeengllegilpydevegseaellgklael 536
                     lL+vp +a+rf+++ee l  lr+w++e+g+rwG+d ++ +el+lpa+ q++wrfgL+R+llGya+++ +g ++++lpyde++g+ ael+g+la+l
      CTQ29679.1 473 LLDVPVLAARFNITEEGLRYLRQWVNESGVRWGMDDDNVRELDLPATGQHTWRFGLTRMLLGYAMDSREGEWQSVLPYDESSGLIAELVGNLASL 567
                     *********************************************************************************************** PP

                     HHHHHHHHHHSSS-B-HHHHTTHHHHHHHHH----SHHHHHHHHHHHHHHHHHHHHHHTT--S-B-HHHHHHHHHHHHHH-EE-TTTTSSSEEEE CS
  Exonuc_V_gamma 537 lerLekwrqrlskprtleeWlerlselledffaedeeeeeelqelrealaelaeeaaaakfeqelslevvrelleerlsqesasqrfltGkvtfc 631
                     l +L+ wr+ l+++r+l+eWl ++++ll+dff +d+e+e++l+++++++ ++++++ +a++ ++++l+++r++l++rl+q++ sqrfl+G v++c
      CTQ29679.1 568 LMQLNLWRRGLAQQRPLAEWLPVCRDLLNDFFLPDSETEAALALIEQQWLAVIDSGLEAQYGEQVPLTLLRDELAQRLDQQRISQRFLAGPVNIC 662
                     *********************************************************************************************** PP

                     E--TT----EEEEEEE--BTTTSS------SS-HHHHS--TT---HHHHHHHHHHHHHHHEEEEEEEEEESBETTTTEB--B-HHHHHHHHHHHT CS
  Exonuc_V_gamma 632 tllpmrsiPfrvvclLGlndgdfPrqdepagfDlmakeprkgDrsrrdddrylfLeallsAreaLyiSYvgrsirdnserpPSvlvselldylaq 726
                     tl+pmrsiPf+vvclLG+ndg +Pr+  p gfDlm+++p++gDrsrrdddrylfLeal+sA++ LyiSY+grsi+dnser PSvlv+el+dy+ q
      CTQ29679.1 663 TLMPMRSIPFKVVCLLGMNDGVYPRTLPPLGFDLMSQKPQRGDRSRRDDDRYLFLEALMSAEQTLYISYIGRSIQDNSERFPSVLVQELVDYIGQ 757
                     *********************************************************************************************** PP

                     TEE-S......HHHHHHHHH..HEEE--SSTTSGGGG.SSSTT--S-GGG CS
  Exonuc_V_gamma 727 nfalk......geealkalk..lvvehplqpfspknFeeksrlfsydkew 768
                     +++l+       +++++++k  +++ h+ +pf+ +nF ++++++sy++ew
      CTQ29679.1 758 SHCLAgdeeldCDASEARVKahITHLHTRMPFDVANF-QEDENKSYAREW 806
                     *****999999555666666635555***********.889999****99 PP

>> RecC_C  RecC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.7   6.2   9.4e-72   5.6e-68       3     198 ..     831    1049 ..     829    1050 .. 0.97

  Alignments for each domain:
  == domain 1  score: 228.7 bits;  conditional E-value: 9.4e-72
      RecC_C    3 elelddLirFlrnParaFlrqrLgvrleeeeeeleddepfeldgLeryqlkdrlleallae....ellarlrargeLPpgafGelaleelleqveal 95  
                   l +d+L+rF+++P+raF++qrL+v+++ ee++++ddepf+l+gL+ryql+++ll++l++e    ++++r ra+geLP+gafGel++e+++ +++al
  CTQ29679.1  831 SLPFDQLLRFWQHPVRAFFQQRLRVNFRAEEDDIPDDEPFTLEGLSRYQLNQQLLNTLIEEqdvsAMFRRFRAAGELPYGAFGELVWETQRLEMQAL 927 
                  6789********************************************************556778******************************* PP

      RecC_C   96 aealrallgeepleslevdldlggtgLtgtldglrergllrwrpsklkakdllraWlehLalca.....................lpaeeArelLae 171 
                  ae++ a++++  ++s+e+dl+ gg++Ltg+l++++++gllrwrps l+ ++ +++WlehL++ca                     l+++eA+++L+e
  CTQ29679.1  928 AERVMAERQQ--AQSMEIDLQCGGVNLTGWLQQVQPDGLLRWRPSLLSVSQGMQLWLEHLVYCAsggtgesrlfvrkegewrfpaLAPAEAQAYLNE 1022
                  *******999..7************************************************************************99********** PP

      RecC_C  172 llalyrqGlrqpLpffpktalayleal 198 
                  l+++y +G++qpL+++p+++ a+l+a+
  CTQ29679.1 1023 LVDGYLLGMSQPLLLLPESGGAWLKAC 1049
                  *************************97 PP

>> Vir_act_alpha_C  Virulence activator alpha C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.77   4.6e+03      30      73 ..       5      50 ..       2      52 .. 0.64
   2 ?   10.1   0.0   0.00017         1       8      43 ..     245     282 ..     244     323 .. 0.73
   3 ?   -2.4   0.1       1.4   8.2e+03      55      76 ..     574     595 ..     560     596 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.77
  Vir_act_alpha_C 30 eheekLaeyeeieerl..eeargqylvLrrgiryeeawieWcdeal 73
                      h  +L+ +e+++e +  ++++ + +  +  + + +++ +W++ +l
       CTQ29679.1  5 YHSNRLDVLEALMEFIveRQRLDDPFQAEMVLVQSTGMAQWLQMTL 50
                     6888899999988888864444444555555566666666666665 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00017
  Vir_act_alpha_C   8 KlfaaavldpealieeLerrreehe..ekLaeyeeiee 43 
                      + ++++  dp+ l+++L r+r++h+  + L  +++ e+
       CTQ29679.1 245 RYYWGDIKDPAFLAKLLSRQRRHHReaRALPLFRDTEQ 282
                      56999********************4444445555555 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.4
  Vir_act_alpha_C  55 LrrgiryeeawieWcdealelL 76 
                       rrg+++++   eW+  +++lL
       CTQ29679.1 574 WRRGLAQQRPLAEWLPVCRDLL 595
                      589999********99888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 7825.76
//
Query:       CTQ29680.1  [L=107]
Description: prepilin peptidase-dependent protein C precursor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-20   73.9   5.3    1.7e-20   73.6   5.3    1.1  1  T2SSppdC  Type II secretion prepilin peptidase dependent prot
    0.00018   20.9   0.2    0.00031   20.2   0.2    1.4  1  N_methyl  Prokaryotic N-terminal methylation motif


Domain annotation for each model (and alignments):
>> T2SSppdC  Type II secretion prepilin peptidase dependent protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   5.3   1.9e-24   1.7e-20       1      80 []      33     104 ..      33     104 .. 0.99

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1.9e-24
    T2SSppdC   1 YqqaLlqgfqqqwqqrqawrlahqqlelyeaqlakaelslppgWqvelqeqtssagCvsvtvtvtspqgrqvklsrlfCp 80 
                 Yq+ ++qg++q++q+rq+wr a+++ +l ++       ++p++ qv+++ qts+++Cvs+tvt+++p  ++v+++rl+Cp
  CTQ29680.1  33 YQRGMAQGIVQLNQTRQLWRDAWRYSQLSAP-------PSPARGQVSRM-QTSRQRCVSITVTISRPVAKRVQMTRLHCP 104
                 9******************************.......***********.*****************************7 PP

>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2   3.5e-08   0.00031       2      26 ..       6      30 ..       5      31 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.5e-08
    N_methyl  2 rkqrGFTLiElLvalaIlaillaaa 26
                ++qrGF+L E + a+a++ + ++a+
  CTQ29680.1  6 KRQRGFSLPETVLAMALMVLTVTAL 30
                89****************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 854.10
//
Query:       CTQ29681.1  [L=135]
Description: hypothetical protein CH1034_280286 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-32  112.6   4.0    1.6e-32  112.4   4.0    1.0  1  DUF2509   Protein of unknown function (DUF2509)


Domain annotation for each model (and alignments):
>> DUF2509  Protein of unknown function (DUF2509)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   4.0   8.7e-37   1.6e-32       1     130 []      15     132 ..      15     132 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 8.7e-37
     DUF2509   1 lllvlglllLkalqqqlesalalvadeqrylkafaqaesaLawgksqsWslksseewqCrqlaeeklkaClrrlsedellllkgeaalaeeeklvlYql 99 
                 lll+lg+llL++l+ q++++la++a+e+++++ +a a+saL+wgk+q Ws++   ++ Cr++a + ++aClr + + +l+l +++++      ++++q+
  CTQ29681.1  15 LLLTLGSLLLEGLNLQQRALLAQTASETQAIRDTAIAHSALQWGKQQVWSAQ--VALACREQAPQGWRACLRIFGDGSLVLSSASGE------VQVWQS 105
                 69**************************************************..9*******************9999999999887......****** PP

     DUF2509 100 vklkekededklvalesGWlDFcPekeeklC 130
                 +++++     +++++++GW+DFcP++e++lC
  CTQ29681.1 106 GEVRGG----QVRFSAHGWSDFCPLREASLC 132
                 ******....9******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 1134.98
//
Query:       CTQ29682.1  [L=185]
Description: prepilin peptidase-dependent protein B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-06   27.5   1.9    2.8e-06   26.6   1.9    1.5  1  N_methyl  Prokaryotic N-terminal methylation motif


Domain annotation for each model (and alignments):
>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   1.9   1.6e-10   2.8e-06       3      26 ..       2      25 ..       1      25 [. 0.94

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.6e-10
    N_methyl  3 kqrGFTLiElLvalaIlaillaaa 26
                ++rGF+L E L+a+aI+++ll++a
  CTQ29682.1  2 SRRGFSLAEALIAMAIGSLLLMGA 25
                69*******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1319.30
//
Query:       CTQ29683.1  [L=183]
Description: prepilin peptidase-dependent protein A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-06   25.8   0.5    9.8e-06   24.9   0.5    1.5  1  N_methyl  Prokaryotic N-terminal methylation motif
  ------ inclusion threshold ------
      0.035   12.9   0.1      0.048   12.5   0.1    1.2  1  PAP_PilO  Pilin accessory protein (PilO)
      0.096   12.4   0.3       0.14   11.9   0.3    1.2  1  TPR_21    Tetratricopeptide repeat-like domain


Domain annotation for each model (and alignments):
>> N_methyl  Prokaryotic N-terminal methylation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.5   1.6e-09   9.8e-06       1      26 [.      29      54 ..      29      55 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.6e-09
    N_methyl  1 mrkqrGFTLiElLvalaIlaillaaa 26
                m++++G+TL E Lv+l++++il+++ 
  CTQ29683.1 29 MNREHGYTLMETLVTLTLMMILSVGG 54
                89********************9875 PP

>> PAP_PilO  Pilin accessory protein (PilO)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1     8e-06     0.048     161     196 ..      36      71 ..       3      87 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8e-06
    PAP_PilO 161 aeiallavalvlsllilgGlvgWrlyeakkeaeaqa 196
                 + + +l++++++ +l +gGl+gW+ +++++   + a
  CTQ29683.1  36 TLMETLVTLTLMMILSVGGLYGWQRWQQQQRLWQTA 71 
                 4466888899999999***********998765555 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   2.3e-05      0.14      10      33 ..      43      66 ..      38      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.3e-05
      TPR_21 10 lilvgvvlalvglaGwqgwqdyqe 33
                +++++++l ++gl+Gwq wq+ q+
  CTQ29683.1 43 TLTLMMILSVGGLYGWQRWQQQQR 66
                6789999*************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1465.32
//
Query:       CTQ29684.1  [L=264]
Description: thymidylate synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.3e-128  426.5   0.0   3.6e-128  426.3   0.0    1.0  1  Thymidylat_synt  Thymidylate synthase


Domain annotation for each model (and alignments):
>> Thymidylat_synt  Thymidylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.3   0.0    2e-132  3.6e-128       1     268 []       2     264 .]       2     264 .] 0.98

  Alignments for each domain:
  == domain 1  score: 426.3 bits;  conditional E-value: 2e-132
                      HHHHHHHHHHHHH-EEEE-TTSSEEEEEEEEEEEEEGGGCB----SSST--HHHHHHHHHHHHTT--BTHHHHTTT--TTHHHHHHTTB-SSSH CS
  Thymidylat_synt   1 kqYldlvrkileeGeekedRtgtgtisvfgaqlrfdlsegefPllTtkkvflksvieEllWflsgetnvkeLqekgvkiWdewadeegdlgpvY 94 
                      kqYldl++k+l+eG+ k+dRtgtgtis+fg+q+rf+l+eg fPl+Ttk+++l+s+i+EllWfl+g+tn+++L+e++v+iWdewade+gdlgpvY
       CTQ29684.1   2 KQYLDLMQKVLTEGTPKNDRTGTGTISIFGHQMRFNLQEG-FPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADENGDLGPVY 94 
                      79*************************************9.***************************************************** PP

                      HHHHHHBTSTTTSSB-HHHHHHHHHHHSTT-ST-EEE---GGGGGGSSS--SEEEEEEEE..SEETEEEEEEEEEEEETTTHHHHHHHHHHHHH CS
  Thymidylat_synt  95 GkqwrkfkaeegkkidqlakvidqlkenpdsRriivsawnpaeldkmaLppChvlfqfyvkdkkegkLslqlyqRSaDvflGvpFNiasyalLt 188
                      Gkqwr+++a++g++idq+++v++qlk++pdsRriivsawn+ eldkmaL pCh++fqfyv   ++gkLs+qlyqRS+DvflG+pFNiasyalL+
       CTQ29684.1  95 GKQWRSWPAPDGRHIDQISTVMNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYV---ADGKLSCQLYQRSCDVFLGLPFNIASYALLV 185
                      ************************************************************...5568*************************** PP

                      HHHHHHHT-EEEEEEEEEEEEEEEGGGHHHHHHHHTS---S--EEEE--SSTHSGGG--GGGEEEES----SXXXXXXX. CS
  Thymidylat_synt 189 hmlaqvtglkpgelihtigdaHiYsnhveqvkeqlereprelpklelnkekkvsiedfeledfelenYkphpkikakvav 268
                      hm+aq+++l++g++++t gd+H+Ysnh+eq++ ql+repr+lpkl +++++  si+d+++edfe+e+Y+php ika+va+
       CTQ29684.1 186 HMVAQQCDLQVGDFVWTGGDTHLYSNHLEQTNLQLSREPRPLPKLVIKRKPA-SIFDYRFEDFEIEGYDPHPGIKAPVAI 264
                      ***********************************************97776.*************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1994.07
//
Query:       CTQ29685.1  [L=291]
Description: phosphatidylglycerol-prolipoprotein diacylglyceryl transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-76  254.9   9.8    6.9e-76  254.7   9.8    1.0  1  LGT       Prolipoprotein diacylglyceryl transferase
  ------ inclusion threshold ------
      0.076   12.3   0.4        2.5    7.4   0.1    2.4  2  DUF4191   Domain of unknown function (DUF4191)
       0.17   11.4   1.1         12    5.4   0.0    2.4  2  DUF4328   Domain of unknown function (DUF4328)
       0.54   10.8   8.9        7.8    7.0   2.4    3.7  3  DUF202    Domain of unknown function (DUF202)
        1.2    9.3  15.7       0.74   10.0   1.6    3.9  4  EamA      EamA-like transporter family


Domain annotation for each model (and alignments):
>> LGT  Prolipoprotein diacylglyceryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.7   9.8   1.9e-79   6.9e-76       1     242 []      13     280 ..      13     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 254.7 bits;  conditional E-value: 1.9e-79
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxx RF
         LGT   1 pvafsigpleirwYgllialgfllavllakrrakke..glkeekdkvddlliyavilgii.GaRlgyvlfY....ylsnpleilkiwegGlaihGglig 92 
                 pv+fs+gp++++wYgl++++gf++a++la+rra++   g+++  ++v++ll+ ++ lg+  G+R+gyvlfY    +l++pl ++++w+gG+++hGglig
  CTQ29685.1  13 PVIFSLGPVSLHWYGLMYLVGFVFAMWLATRRANRPgsGWTK--NEVENLLYAGF-LGVFlGGRIGYVLFYnlpvFLADPLYLFRVWDGGMSFHGGLIG 108
                 89*********************************9666666..56*********.99999**********999888********************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxxxxxxxxx......xxxxxxx RF
         LGT  93 vllalllyakkkklsflkvlDivapvvalgqaigRlGNfingelyGkptdlpwg......................lvfkkaeelp......lprhPtq 163
                 v+l+++++a++ k +f++v D++ap++++g++ gRlGNfingel+G++  +                                         lprh++q
  CTQ29685.1 109 VILVMIIFARRTKRTFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPSFHYtmifpgsraedlallpthpewqS--------LfdtygaLPRHASQ 199
                 *********988**********************************6654443355544444444444444333322........033334444***** PP

                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
         LGT 164 lYes.lenlllflilllllskkkkkkkkdgevfglylilyglgRffiEflR.tds....lllgslrmgqllsiplvlagialliv 242
                 lYe  le+++lflil l+++  k+  + +g v+gl+li+ygl+R+++Ef+R +d      +++ ++mgq+lsip+vlagi+++++
  CTQ29685.1 200 LYELaLEGVVLFLILNLFIR--KP--RPTGSVSGLFLIGYGLFRIIVEFFRqPDAqftgGWVQYISMGQILSIPMVLAGIIMMVW 280
                 *****************774..33..458**********************9996556544599******************997 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.019        67      53      75 ..      25      47 ..      13      58 .. 0.75
   2 ?    7.4   0.1   0.00071       2.5      54      79 ..     101     126 ..      60     129 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.019
     DUF4191 53 llilgillgllvalivltrraek 75
                +  l  l+g+++a+++ trra++
  CTQ29685.1 25 WYGLMYLVGFVFAMWLATRRANR 47
                34444569************997 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00071
     DUF4191  54 lilgillgllvalivltrraekaaya 79 
                  + g l+g+++++i+++rr++++ ++
  CTQ29685.1 101 SFHGGLIGVILVMIIFARRTKRTFFQ 126
                 4567789***************9986 PP

>> DUF4328  Domain of unknown function (DUF4328)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.3    0.0077        28      21      45 ..      22      46 ..      18      52 .. 0.88
   2 ?    5.4   0.0    0.0034        12      19      44 ..     259     286 ..     249     290 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0077
     DUF4328 21 gllalllllaaavvflvWlrraran 45
                +l + +l+ + + vf++Wl+ +ran
  CTQ29685.1 22 SLHWYGLMYLVGFVFAMWLATRRAN 46
                5677789999************998 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0034
     DUF4328  19 lagllall..lllaaavvflvWlrrara 44 
                 ++++ ++l   +++a++ ++vW +r r 
  CTQ29685.1 259 YISMGQILsiPMVLAGIIMMVWAYRHRP 286
                 5556666555799************986 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.17   6.1e+02      41      63 ..      24      46 ..      10      55 .. 0.79
   2 ?   -1.8   0.1       1.2   4.4e+03      58      58 ..     117     117 ..      92     148 .. 0.65
   3 ?    7.0   2.4    0.0022       7.8      41      61 ..     226     246 ..     203     291 .] 0.49

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.17
      DUF202 41 kilglilivlgiltllvglvryl 63
                ++ gl+++v  +++++++++r  
  CTQ29685.1 24 HWYGLMYLVGFVFAMWLATRRAN 46
                78889988888888888888865 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
      DUF202  58 g 58 
                 +
  CTQ29685.1 117 A 117
                 1 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0022
      DUF202  41 kilglilivlgiltllvglvr 61 
                 ++ gl+li+ g++ ++v ++r
  CTQ29685.1 226 SVSGLFLIGYGLFRIIVEFFR 246
                 444444444444444444333 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.6   0.00021      0.74      35      78 ..      27      71 ..      14      87 .. 0.76
   2 ?    2.0   0.2      0.06   2.1e+02      34      68 ..     101     134 ..      98     152 .. 0.69
   3 ?    0.0   0.4      0.25   8.8e+02      42      70 ..     207     233 ..     197     245 .. 0.47
   4 ?    5.1   0.0    0.0067        24      26      55 ..     258     287 ..     252     291 .] 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00021
        EamA 35 fvrfliagillliiallkegkl.aklslkdwllllllgllgtvla 78
                ++++l+++++ + +a  +++++ + ++++++  ll+ g+lg++l+
  CTQ29685.1 27 GLMYLVGFVFAMWLATRRANRPgSGWTKNEVENLLYAGFLGVFLG 71
                5788999999999999999999*9999999877777777776654 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.06
        EamA  34 tfvrfliagillliiallkegklaklslkdwllll 68 
                 +f+  li+ il++ii + + ++   + ++d+++ l
  CTQ29685.1 101 SFHGGLIGVILVMIIFARRTKRT-FFQVSDFIAPL 134
                 56666788888888877777777.88888866663 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.25
        EamA  42 gillliiallkegklaklslkdwllllll 70 
                 g++l++i+ l+ +k+ ++   ++  l+l+
  CTQ29685.1 207 GVVLFLILNLFIRKP-RP-TGSVSGLFLI 233
                 445545544444444.22.2222222222 PP

  == domain 4  score: 5.1 bits;  conditional E-value: 0.0067
        EamA  26 rkvspltltfvrfliagillliiallkegk 55 
                 +++s  +++ + +++agi+++++a  ++ +
  CTQ29685.1 258 QYISMGQILSIPMVLAGIIMMVWAYRHRPQ 287
                 67788889999999*****99999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2287.54
//
Query:       CTQ29686.1  [L=748]
Description: fused PTS enzyme: PEP-protein phosphotransferase (enzyme I); GAF domain containing protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-105  352.3   0.0   2.7e-105  351.7   0.0    1.2  1  PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
    9.3e-23   80.6   1.9    9.3e-23   80.6   1.9    2.3  2  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
    6.7e-17   62.4   0.1    1.9e-16   60.9   0.1    1.8  1  GAF              GAF domain
    4.2e-16   58.4   0.9    9.1e-16   57.3   0.5    1.8  2  PEP-utilizers    PEP-utilising enzyme, mobile domain
    2.1e-14   54.0   0.1    4.9e-14   52.8   0.1    1.7  1  GAF_2            GAF domain
    2.4e-10   40.8   0.1    7.2e-10   39.3   0.1    1.9  1  GAF_3            GAF domain
     0.0054   16.7   0.0        3.8    7.4   0.0    2.3  2  Lipase_GDSL      GDSL-like Lipase/Acylhydrolase
  ------ inclusion threshold ------
       0.05   12.7   0.0       0.12   11.5   0.0    1.6  1  HpcH_HpaI        HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.7   0.0  1.2e-108  2.7e-105      10     293 ..     425     707 ..     417     708 .. 0.97

  Alignments for each domain:
  == domain 1  score: 351.7 bits;  conditional E-value: 1.2e-108
                      CCCCHCCCXBCEEEEEESSCHHHHHHHHCTXSSEEEEEHHHHCTTSCCHHHHHHHHHHHHHHHHHTTTSEEEEEXXXSSCCGGSGGCHHHH.XS CS
  PEP-utilizers_C  10 llavtkdgkkikvlaNidtpedaekalengaeGiGLlRtEflfmareelpteeeqaeaykkvleamngrpvvvRtlDiggdkelpelkeepeev 103
                        + +k+g+++kv++N++++ ++e++l + ++GiGL+RtE+ fm ++ +p+eeeq+++y+++l+++n++pv++RtlDig+dk+lp++    +e+
       CTQ29686.1 425 RASELKSGERVKVMLNAGLSPEHEEKLGSFVDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNSKPVTLRTLDIGADKQLPYM--PISEE 516
                      5677899********************************************************************************..55699 PP

                      XGGGSSXTHHHHCCSHHHHHHHHHHHHHHCC.CCEEEEEESSXXSHHHHHHHHHHHHHHHHHHHHCTCTXXTTXEEEEEEXSHHHHHTHHHHCT CS
  PEP-utilizers_C 104 NPmlGfRgirlglsepelfetqlrAllrasa.agkleimlPmvasveeleeakkiieevkeelekegvkkkkkvkvGiMiEvpsaalladklak 196
                      NP+lG+Rgir++l++pe+f +q+rA+lra+a +g+l+i+lPmv+s+ee++ea+++i ++ +e+e+++ +  +  ++G+M+Evps+++++++la 
       CTQ29686.1 517 NPCLGWRGIRITLDQPEIFLIQVRAMLRANAaTGNLSILLPMVTSLEEVDEARRLIDRASREVEEMIGYAIPRPRLGVMLEVPSMVFMLPQLAS 610
                      ******************************9788********************************999999********************** PP

                      TSSEEEEXHHHHHHHHHTXXCCCHCHHHHSXTTTCHHCCCHHHHHHHHHHCCXEEEEESCCCCSCCCHHHHHHCTXSEEEEXGGGHHHHHHHHH CS
  PEP-utilizers_C 197 evdFfSiGtNDLtQytlavdRdneevaklydplepavlrlikevikaaeekglkvgiCGelagdpsavellvglGldelSmsaasvpaaraala 290
                      ++dF+S+GtNDLtQy+lavdR+n++va +yd+l+pavlr+++++ + ae+ g+++++CGe+agdp++v +l+glG+++lSm+ +sv++++++l+
       CTQ29686.1 611 RIDFISVGTNDLTQYLLAVDRNNTRVASMYDSLHPAVLRALAMIAHDAERFGIDLRLCGEMAGDPMCVTILIGLGYRHLSMNGRSVARVKYLLR 704
                      *********************************************************************************************9 PP

                      CTT CS
  PEP-utilizers_C 291 qve 293
                      +++
       CTQ29686.1 705 RID 707
                      986 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   1.9   4.2e-26   9.3e-23       3     116 .]     174     294 ..     172     294 .. 0.90
   2 ?   -1.6   0.1       1.3   2.9e+03      43      73 ..     632     658 ..     620     660 .. 0.62

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 4.2e-26
                      EEEE-SEEEEEEE.....---.-----G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH...T-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHT- CS
  PEP-utilisers_N   3 iaaspGiaiGkav.....eveveeeeveaedveaelerleeAlekvreelealaeka...lgeeeaaifeahlmlleDpelleeveerIreggl 88 
                      ++as+G+ai++ +      +  +++e+++ d+++e+erl+ Ale++++e+++ +++    +++e aaif+ + +ll+D  l++e+ +++++ g 
       CTQ29686.1 174 LPASSGVAIAEGWmdvslPLMEQVYEASTLDTASERERLTGALEEAANEFRRYSKRYaagAQKETAAIFDLYSHLLSDARLRRELFAEVDK-GA 266
                      79************99883345788899999*********************8777776666667*************************5.55 PP

                      -HHHHHHHHHHHHHHHHHHTT-HHHHHH CS
  PEP-utilisers_N  89 naeaAveevveefaaqfealddeylreR 116
                       ae+Av++ +e+fa+qf+al+d yl+eR
       CTQ29686.1 267 VAEWAVKKIIEKFAEQFAALSDGYLKER 294
                      8*******************999****9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
                      HHHHHHHHHHHHT-HHHHHHHHHHHHHHT-H CS
  PEP-utilisers_N  43 vreelealaekalgeeeaaifeahlmlleDp 73 
                        ++++++++++    + a+++a +m+++D 
       CTQ29686.1 632 NNTRVASMYDSL----HPAVLRALAMIAHDA 658
                      444444444443....245999999999997 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.1   8.4e-20   1.9e-16       2     131 ..      18     152 ..      17     154 .. 0.80

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 8.4e-20
                 HHHHHHHHHHHHHHHHTESEEEEEEEEETTEEECEEEEECCEEEET........TSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEE CS
         GAF   2 leelldtvveelrellgadrvalylpdydGlhydipqasrwlfmkn........grgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslv 92 
                 l e+ld++v +++++++ + +++yl+d d  +y    a r l  +         ++g++g v +  +p++++d++++p f        +++  +r++l+
  CTQ29686.1  18 LNEALDILVTDVCQAMETEVCSVYLADNDRRCY-YLMATRGLKKPRgrtvalafDEGLVGLVGRLAEPINLADAQKHPSFKY---IPAVKEDRFRAFLG 112
                 6899*********************66666666.34444443333311111223556777888999*************998...78999********* PP

                 EEEEETTEEEEEEEEEE..SSSCSHHHHHHHHHHHHHHHHH CS
         GAF  93 vPlvndgelwGllvlhn..psppftreelellqvladqvav 131
                 vP++++++l+G+lv+ +   + +f+++e+ +l +la+q a 
  CTQ29686.1 113 VPIIQRRQLLGVLVVQQreLR-QFDESEESFLVTLATQMAA 152
                 *****************5433.6***************996 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.5   4.1e-19   9.1e-16       4      73 .]     321     391 ..     318     391 .. 0.96
   2 ?   -3.8   0.0       4.9   1.1e+04      10      32 ..     716     739 ..     714     739 .. 0.77

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 4.1e-19
                    S-EEEEES---HHHHTTS-..GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.HH--TEEEEEETTTT CS
  PEP-utilizers   4 egvILvaeetspsdiagld..kaaGivterGGmtSHaAivArelgiPaVvgvgeatielkegdlitvDgstG 73 
                    +  ILva+e+s+  +a+++  ++aG+v+  G+++SHaAi+ r+lgiP+V+g++    +l  g +++vDg++G
     CTQ29686.1 321 ARIILVADELSATTLAEVPqdRLAGVVVRDGAANSHAAIMVRALGIPTVMGADIQP-SLLHGHTLIVDGYRG 391
                    568****************************************************9.*************99 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.9
                    ES---HHHHTTS-.GEEEEEES-- CS
  PEP-utilizers  10 aeetspsdiagld.kaaGivterG 32 
                    +++++++++a+++ ++a++   rG
     CTQ29686.1 716 RRSLDAQMTAEVRhQVAAFMERRG 739
                    788999999999988888876655 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.1   2.2e-17   4.9e-14       4     137 ..      18     154 ..      15     155 .. 0.88

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 2.2e-17
                 HHHHHHHHHHHHHH.SS..EEEEEEE-TTS-.EEEEEEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHH.HHHHTT--EEEEEE- CS
       GAF_2   4 leelldlvldelve.lgaalgyillvdddgg.lrlaawgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglp.aghaglrsflavPli 99 
                 l+e ld+++  +++ +  +++ ++l d d++ ++l a ++  +  g  +  +++eglvg + r  +p+ l+d + +p+ k  p   + ++r+fl+vP+i
  CTQ29686.1  18 LNEALDILVTDVCQaMETEVCSVYLADNDRRcYYLMATRGLKKPRGRTVALAFDEGLVGLVGRLAEPINLADAQKHPSFKYIPaVKEDRFRAFLGVPII 116
                 67778888888877567789999999988885666688888888888886788******************************999999********** PP

                 TTS---EEEEES......--HHHHHHHHHHHHHHHHHH CS
       GAF_2 100 segrvvGvlnlyankppafdeedlelLeelaeqiaiai 137
                 ++ +++Gvl+++  + ++fde++ ++L +la+q+a ++
  CTQ29686.1 117 QRRQLLGVLVVQQRELRQFDESEESFLVTLATQMAAIL 154
                 *889*******9999999*****************987 PP

>> GAF_3  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.1   3.2e-13   7.2e-10       3     124 ..      19     151 ..      17     156 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 3.2e-13
       GAF_3   3 dellekllkllvkllgaevgalllldedgn..klqvaagwdgkpalse.sldedsalarralssgevvse......psf...aeedglpdraalavPLv 89 
                  e l++l+  +++++ +ev++++l d+d++  +l +++g   kp+  + +l  d+ l  ++    e++        psf   ++    + ra l vP++
  CTQ29686.1  19 NEALDILVTDVCQAMETEVCSVYLADNDRRcyYLMATRGL-KKPRGRTvALAFDEGLVGLVGRLAEPINLadaqkhPSFkyiPAVKEDRFRAFLGVPII 116
                 6889************************998788888999.8888877766666777776655556654422222222222244445899********* PP

       GAF_3  90 agrqviGvlalastkprafdaedlelleslArqia 124
                  +rq++Gvl++++++ r+fd++++++l +lA+q+a
  CTQ29686.1 117 QRRQLLGVLVVQQRELRQFDESEESFLVTLATQMA 151
                 *99******************************99 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0022         5     131     175 ..     207     251 ..     151     270 .. 0.87
   2 !    7.4   0.0    0.0017       3.8      72     107 ..     612     647 ..     526     699 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0022
                  CTCCCCHCCHHHHHHHHHHHHHHHHHHHHHCTEEEECHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL 131 qeekdakklgekgnefvgeynqrlndlaekdgfavvDlydelqgl 175
                  +e+++ ++  e++++  + y++r+ + a+k++ a +Dly++l + 
   CTQ29686.1 207 SERERLTGALEEAANEFRRYSKRYAAGAQKETAAIFDLYSHLLSD 251
                  56778888899999999***********************98775 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0017
                  EEEEE--CTCC-EECSSCTTTCEEHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL  72 lviislGtNDsnlgkkstdaakkeaeeyiknlreai 107
                  + +is+GtND++++ +  d++++ +++ +++l+ a+
   CTQ29686.1 612 IDFISVGTNDLTQYLLAVDRNNTRVASMYDSLHPAV 647
                  5568***********************999998664 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.4e-05      0.12      83     161 ..     549     629 ..     524     668 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.4e-05
                 TTSSEEEESS--SHHHHHHHHHHTSHTTTS---....HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTT-T CS
   HpcH_HpaI  83 lgaqvvlvPkvetaeealevvsalrepekgirg....anketrllaqiEsaegvknaeeIaavegldgvflGaeDlsadlgtk 161
                  g  ++l+P+v++ ee+ e+ +++ ++++++      a  + rl + +E    v  +++ a   ++d + +G++Dl+  l + 
  CTQ29686.1 549 TGNLSILLPMVTSLEEVDEARRLIDRASREVEEmigyAIPRPRLGVMLEVPSMVFMLPQLA--SRIDFISVGTNDLTQYLLAV 629
                 455689***********9988877766666555555599999*****************98..59**********99876443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.39
# Mc/sec: 5783.22
//
Query:       CTQ29687.1  [L=176]
Description: (di)nucleoside polyphosphate hydrolase (Ap5A pyrophosphatase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-27   94.2   0.0    8.3e-27   93.8   0.0    1.1  1  NUDIX     NUDIX domain
  ------ inclusion threshold ------
      0.096   12.5   0.1        1.5    8.6   0.0    2.7  3  DUF3613   Protein of unknown function (DUF3613)


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0   9.2e-31   8.3e-27       2     130 ..       7     146 ..       6     147 .. 0.88

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 9.2e-31
                 EEEEEEEEEEETTSEEEEEEESSSSTTTEESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE.............EEEEEEE CS
       NUDIX   2 lrravgvvllnekgevLlvrrskkpfpgWelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygd.............eheilyv 87 
                 +r++vg+v++n++g+v ++rr+    ++W++P+G++ pgE++e+A+ REl+EE+Gl+ +++++l+++++++ y+ p++              ++++l+ 
  CTQ29687.1   7 YRPNVGIVICNRQGQVMWARRY--GQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLvrwdtkpvcigqkQKWFLLQ 103
                 89********************..7777**************************************************9************99999999 PP

                 EE.EEECSGCSST.STTTEEEEEEEEHHHHHHHHTHCTHHHHHHH CS
       NUDIX  88 fl.eevegelepn.denevsevrwvpleellkeklaaesrkllpw 130
                 +   +++ +++ +  ++e++++rwv++      + ++++r+++++
  CTQ29687.1 104 LIgNDADINMQ-TsSTPEFDGWRWVSYWYP-VRQVVSFKRDVYRR 146
                 99555555555.45*********8888766.66667777777665 PP

>> DUF3613  Protein of unknown function (DUF3613)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.12   1.1e+03      14      23 ..      66      75 ..      60      78 .. 0.82
   2 ?    8.6   0.0   0.00017       1.5      18      43 ..      95     120 ..      89     123 .. 0.89
   3 ?   -1.6   0.1      0.27   2.4e+03      31      45 ..     160     174 ..     157     175 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.12
     DUF3613 14 epgtateaWL 23
                +++  t+ WL
  CTQ29687.1 66 RILASTRNWL 75
                78899****9 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00017
     DUF3613  18 ateaWLaLQrsgrqAspqkQsltgaa 43 
                 + + W++LQ  g++A  + Q+ + ++
  CTQ29687.1  95 QKQKWFLLQLIGNDADINMQTSSTPE 120
                 6799****************988765 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.27
     DUF3613  31 qAspqkQsltgaare 45 
                 + +p++Q++++  r+
  CTQ29687.1 160 ESAPKPQNAPAYRRK 174
                 567788888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1433.17
//
Query:       CTQ29688.1  [L=231]
Description: methyl-directed mismatch repair protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-33  114.2   0.0    3.4e-33  113.7   0.0    1.2  1  MutH      DNA mismatch repair enzyme MutH


Domain annotation for each model (and alignments):
>> MutH  DNA mismatch repair enzyme MutH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   0.0   1.9e-37   3.4e-33       1     103 []      59     157 ..      59     157 .. 0.99

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 1.9e-37
        MutH   1 lgaeansksepDfkelgvELKttPlkknkknklkakErlvvsiidleeiakeefetshvlkKlkkvllvpyegereipvkerkigkaklwspseedeki 99 
                 lga+a+sk+e+Df+ lgvELKt+P++++    ++++E+++v++++l+ +++ ++e+shv++Kl++vl++p+eger+ip+++r++g + lwsp+e++e++
  CTQ29688.1  59 LGASAGSKPEQDFAALGVELKTIPIDSR----GRPLETTFVCVAPLTGNSGVTWESSHVRHKLQRVLWIPVEGERTIPLAARRVGAPLLWSPDEDEERQ 153
                 799*************************....******************************************************************* PP

        MutH 100 lkqD 103
                 l+ D
  CTQ29688.1 154 LRMD 157
                 *987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1855.45
//
Query:       CTQ29689.1  [L=237]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-53  180.2  15.2    3.9e-53  179.8  15.2    1.1  1  TerC      Integral membrane protein TerC family


Domain annotation for each model (and alignments):
>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.8  15.2   2.2e-57   3.9e-53       2     180 ..      17     203 ..      16     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 179.8 bits;  conditional E-value: 2.2e-57
        TerC   2 tlvlleivLsiDNlvviallvkklpeeqqkkalllGilgAlvlRillillavallel.............f.dlilligglfLlytavkellekrlenk 86 
                 tl+lleivL+iDN+++++l+v+klp++q++ a+++G++gA+v+R++l+++++++++l             f dlill+gglfL+++a ke++e++    
  CTQ29689.1  17 TLTLLEIVLGIDNIIFLSLVVAKLPTAQRAHARRIGLMGAMVMRLALLASIAWVVKLtnplftvfgqeisFrDLILLLGGLFLIWKASKEIHESI---- 111
                 799************************************************************999998747*******************9865.... PP

        TerC  87 lvkeekkkkkktkstllavviqielaDlvfslDSvlaavaitsdlfivitavilsilvlrflakllakllerfptlkylalalllligvklvle 180
                   + e++  k++ +++l +++qi+l+D++fslDSv++av+++++lfi+++av++++ v++f+a+++ ++++r+p +k+lal++l+l+g++l+le
  CTQ29689.1 112 --EGEEEGLKTNVHSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAAVVIAVGVMMFAARPIGDFVDRHPSVKMLALSFLILVGFTLMLE 203
                 ..88999999999******************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1696.06
//
Query:       CTQ29690.1  [L=72]
Description: hypothetical protein CH1034_280295 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-24   83.5   5.0    7.8e-24   83.3   5.0    1.1  1  DUF903    Bacterial protein of unknown function (DUF903)
  ------ inclusion threshold ------
      0.015   14.9   0.5        1.1    9.0   0.1    2.1  2  CopK      Copper resistance protein K


Domain annotation for each model (and alignments):
>> DUF903  Bacterial protein of unknown function (DUF903)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   5.0   8.7e-28   7.8e-24       1      48 [.      23      70 ..      23      71 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 8.7e-28
                EEEEEETTS-EEEEES--EE-TTTSCEEEEBTTS-EEEEEGGGEEEEE CS
      DUF903  1 pyvittkDGqtivtdgkPelDkdtGmyeYeDeeGkevqInkddVkqik 48
                +yv++tkDG++i+tdgkP +D+dtG+++YeD++G++ qIn+ddV+qi+
  CTQ29690.1 23 DYVMATKDGRMILTDGKPTVDDDTGLISYEDQQGNKMQINRDDVSQII 70
                6**********************************************8 PP

>> CopK  Copper resistance protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00012       1.1      39      55 ..      22      38 ..      16      43 .. 0.87
   2 ?    4.8   0.1    0.0024        22      23      42 ..      47      66 ..      36      69 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00012
                TT-EEEBTTS-EEEEET CS
        CopK 39 egavmeTkDgqkiimkg 55
                ++ vm TkDg+ i + g
  CTQ29690.1 22 SDYVMATKDGRMILTDG 38
                6899*********9877 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0024
                S-EEEEETTSEEEE--TT-E CS
        CopK 23 GKmamEdklGravrmkegav 42
                G ++ Ed+ G+ ++++++ v
  CTQ29690.1 47 GLISYEDQQGNKMQINRDDV 66
                66788999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 582.66
//
Query:       CTQ29691.1  [L=346]
Description: putative oxidoreductase, NADP(H)-dependent aldo-keto reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-71  240.4   0.0    2.5e-71  240.3   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
        0.1   12.8   0.0       0.28   11.4   0.0    1.7  1  YdiH          Domain of unknown function


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.3   0.0   2.8e-75   2.5e-71       2     292 ..      16     337 ..      15     339 .. 0.93

  Alignments for each domain:
  == domain 1  score: 240.3 bits;  conditional E-value: 2.8e-75
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-.......TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HH......H CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevY.......gkgqseellGealkksrkkreeviiatKvdlrdaeiksglske......n 85 
                   lglGt+++g   ++s+++a + l++a+ +Gin++D+Ae+Y        +g  e+++G++l+k r++re++++a+Kv +   +++s+++++      n
    CTQ29691.1  16 LGLGTMTFGE--QNSEADAHQQLDYAVANGINLIDVAEMYpvpprpeTQGLTETYVGNWLAK-RGNREKLVLASKVSGPARNNDSSIRPNhvldrkN 109
                   8********7..8*************************************************.*************55555555555555555566* PP

                   HHHHHHHHHHHHT-S-EEEEEE-S--TTS-.................HHHHHHHHHHHHHTTSEEEEEEES--.HHHHHHH...HHTTT--EEEEE- CS
  Aldo_ket_red  86 iresleeslkrLgtdyvDllllHrpdpslp................sieevldaleelvkeGkiraiGvSnfs.veqleka...kkkkkvkivavqv 162
                   ire+l++slkrL+tdy+Dl+++H+p++ +                  ++++l+al+e++++Gkir+iGvSn++  + ++ +    k+   +iv++q+
    CTQ29691.1 110 IREALHASLKRLQTDYLDLYQVHWPQRPTNcfgklgytwadaapavTLLDTLEALTEFQRAGKIRYIGVSNETaFGVMRYLhlaDKHDLPRIVTIQN 206
                   *************************************************************************889999889999999999****** PP

                   B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------..TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT- CS
  Aldo_ket_red 163 eynllreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd..ertsknldaaeelselakehgvslaqlalryalsqpav 257
                    y+ll++ +e gl+e+ + +gv l ays+l+ G ltgky + +++  + ++  + r+     ++ ++a+ ++ ++ak hg ++aq+al+++  qp+v
    CTQ29691.1 207 PYSLLNRSFEVGLAEVSQFEGVELLAYSCLAFGTLTGKYLNGAKPA-GARNTLFSRFtrYSSEQSQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFV 302
                   ****************************************888765.6666666666788888999******************************* PP

                   SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 258 givipgasnieqlednldalelklseeevaeldel 292
                    ++++ga+++ ql++n+++l+l+lsee++ae++++
    CTQ29691.1 303 ASTLLGATTMTQLQANVESLQLELSEEVLAEIEAV 337
                   ********************************986 PP

>> YdiH  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.1e-05      0.28       5      23 ..     286     304 ..     283     335 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.1e-05
        YdiH   5 ldPtqlaieflrrdqsvls 23 
                 ldP+q+a+ f+rr + v s
  CTQ29691.1 286 LDPAQMALAFVRRQPFVAS 304
                 9************997755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2791.15
//
Query:       CTQ29692.1  [L=397]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-15   57.1  44.3    1.4e-15   57.1  44.3    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        1.1    9.3   6.4       0.55   10.2   3.4    2.1  1  DUF1427   Protein of unknown function (DUF1427)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1  44.3   1.6e-19   1.4e-15       1     349 [.      19     355 ..      19     358 .. 0.77
   2 ?   -2.8   5.7      0.25   2.3e+03     290     323 ..     355     388 ..     348     392 .. 0.68

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1.6e-19
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 +++a+flsa++ ++l++a   al+++l + + ++  l  l+  +++++++++G ++d f   rv++++  l +lg+ +++f+ +    +++  l G+ga
  CTQ29692.1  19 VICAQFLSAFGDNALLFATL-ALMKQLYYPEWSQPVLQMLFVGAYILFAPFVGQFADSFAKGRVMMVANGLKLLGAGCICFGVN---PFIGYTLVGIGA 113
                 589***********999999.899999978888888888888999**************9999************555556544...38999******* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 +a+ pa + ++ +++++++  +a+gl+ +++ ++++lg ++gg+la  +   a+ +++a v+  a+v + l++p+ p +r+ +s + +   +   ++++
  CTQ29692.1 114 AAYSPAKYGILGELTTGDKLVKANGLMESSTIAAILLGSMAGGILA-DWHVLAALIVCAMVYGGAVV-ANLWIPRLPAARPGQSWRFK---PMTYSFFS 207
                 **********************************************.55677779999999999877.44666555555555543333...24445555 PP

       MFS_1 199 awkallkdpvlw.illialllfffgfsg...lltllplylqevlgls.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalgla 292
                 a + l+++     +l+ ++l++++g+++   l++++p+     lg++ +++ ++  l ++ +vg++l   ++  + +l    +    +++++l+ ++++
  CTQ29692.1 208 ACRTLWRNGETRfSLMGTSLFWGAGVTLrflLVIWVPV----ALGITsNAMPTY--LNAMVAVGIVL---GAGAAAKLVTLETVSRCMPAGILIGIAVI 297
                 67777777766446666777776666656667777777....788885345555..77777777444...44445677778899999999999999999 PP

       MFS_1 293 llavtssavllllvlvliGfglgfvfpsllalasdlappeeag..tasglfntagslgg 349
                  +av +s + +  +l+l+G+++gf+ ++l+al+++   ++  g   a+++ n+  ++++
  CTQ29692.1 298 AFAVQQSLLPAFGLLLLLGVFGGFFIVPLNALLQERG-KHSVGagNAIAVQNLGENVAM 355
                 99999888888889999******************97.455542266666666666665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.25
       MFS_1 290 glallavtssavllllvlvliGfglgfvfpslla 323
                 +l++l+++s av + ++ v +G+g+g vf+ ++a
  CTQ29692.1 355 MLLMLGLYSLAVSVGVPPVAVGIGFGAVFAVAIA 388
                 4555555556666777888888888887776665 PP

>> DUF1427  Protein of unknown function (DUF1427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.4   6.1e-05      0.55       7      57 ..     286     336 ..     282     356 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.1e-05
     DUF1427   7 lgaGllvGviYsllnvrsPaPPvvaLvGLlGiLvGeqvvPvakrllageev 57 
                 + aG+l+G+   ++ v+    P+  L+ LlG+  G  +vP+   l ++ + 
  CTQ29692.1 286 MPAGILIGIAVIAFAVQQSLLPAFGLLLLLGVFGGFFIVPLNALLQERGKH 336
                 569*************************************98776665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3054.42
//
Query:       CTQ29693.1  [L=719]
Description: fused 2-acylglycerophospho-ethanolamine acyl transferase; acyl-acyl carrier protein synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-69  232.7   0.0    8.5e-69  232.2   0.0    1.2  1  AMP-binding      AMP-binding enzyme
    8.4e-17   61.1   0.0    2.2e-16   59.7   0.0    1.6  2  Acyltransferase  Acyltransferase
     0.0006   20.7   0.0     0.0014   19.5   0.0    1.7  1  AMP-binding_C    AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.2   0.0   1.4e-72   8.5e-69      22     422 ..     231     619 ..     212     620 .. 0.81

  Alignments for each domain:
  == domain 1  score: 232.2 bits;  conditional E-value: 1.4e-72
                  EEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCCHHHHHH..HHSCC CS
  AMP-binding  22 tlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdselleklle..aaakl 117
                    TYr l  ++  +A+ L++   ++g++++++lpn     ++++++   G +++++n t + + l+ +++++e  +++  ++++ l+k +     ++l
   CTQ29693.1 231 PDTYRKLLTKTLFVARILEK-YSQPGEKIGLMLPNAGISAAVIFGAIARGRIPAMMNYTAGVKGLSSAIAAAELNTIF--TSRTFLDKGKLwhLPEQL 325
                  55****************98.78*******************************************************..777774443220022223 PP

                  -EECEEEEESCCS-HCCHCCCHCCCCSCTTS.....-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHHHHHCSCCTTT-EEEESS- CS
  AMP-binding 118 eavklvivldadellkeeelkeeeeseekae.....kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslkletrfklkeddvvlsilp 210
                   +v++v + d    lk +   +++ +          +   +++++p+d a+i++TSG+ G+PKGV++sh++l++nv ++k  t  +++++d+++s lp
   CTQ29693.1 326 TQVRWVFLED----LKGDITLADKLWIF--AhllapRL-AQVKQQPEDAAMILFTSGSEGNPKGVVHSHKSLLSNVEQIK--TIADFTANDRFMSALP 414
                  3333333322....23333333333333..13456533.45589**********************************86..3356779********* PP

                  TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHT CS
  AMP-binding 211 lahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlsslrlvllggeplspellrffralfg 308
                  l+h+fgl+++ll++ll Ga+v l+p   +   +++ el+ + ++tv++g+ ++l   ++  +++      d+ +lr+v++g+e+l++++ + ++++fg
   CTQ29693.1 415 LFHSFGLTVGLLTPLLTGAEVFLYPSPLH--YRVVPELVYDRNCTVLFGTSTFLANYARFANPY------DFYRLRYVVAGAEKLQESTKQLWQDKFG 504
                  *************************6655..56789*********************9955677......9*************************** PP

                  CEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT..-H.HHHHHHEEE.....TCCEEEE CS
  AMP-binding 309 eevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlk..kp.eataeafds.....egrwlrT 398
                   ++legYG TE+++vv+ ++     +k+g+vG++lpg++++++        + ++ G l ++gp++mkgYl+  +p  + a a  +     e +w+ T
   CTQ29693.1 505 LRILEGYGVTECAPVVS-IN-VPMAAKVGTVGRILPGMDARLLAMP-----GIEQGGRLQLKGPNIMKGYLRveNPgMLEAPAAENqhgemEAGWYDT 595
                  ****************9.44.2333579**************9987.....45677***************86455323333332245544556**** PP

                  EEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 399 GDlgrldedGyleivgRkkdlikl 422
                  GD++++de+Gy++i gR+k   k+
   CTQ29693.1 596 GDIVTFDEQGYVRIQGRAKRFAKI 619
                  *******************87775 PP

>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   3.6e-20   2.2e-16       2     134 ..      16     137 ..      15     138 .. 0.92
   2 ?   -3.5   0.0       1.3   7.5e+03      93     123 ..     367     397 ..     358     404 .. 0.74

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 3.6e-20
  Acyltransferase   2 vrvtglenlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegklv 95 
                      vr tg  +   ++++++ +NH s lD +ll+l l     p ++v+++  ++ + ++++ l   ++f+++d     ++  s++++++l+e+g+ v
       CTQ29693.1  16 VRLTGDTQALYQQKVLITPNHVSFLDGILLALFL-----PVRPVFAVYTSISQRWFMRALTPIIDFVPLDP----TKPMSIKHLVRLIEQGRPV 100
                      55666555555799********************.....9************99*****************....7788*************** PP

  Acyltransferase  96 viFPEGtrsregellpfkkGlvrlaakakkgvpivPvai 134
                      viFPEG+ s +g+l++ + G++++aak   + +ivP+ i
       CTQ29693.1 101 VIFPEGRISVSGSLMKIYDGAAFVAAKS--QATIVPLRI 137
                      ****************************..******987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.3
  Acyltransferase  93 klvviFPEGtrsregellpfkkGlvrlaaka 123
                        +++F +G   +  +++  +k+l + +++ 
       CTQ29693.1 367 AAMILFTSGSEGNPKGVVHSHKSLLSNVEQI 397
                      4488899998888888888888888888777 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.4e-07    0.0014       6      76 .]     634     701 ..     629     701 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.4e-07
                    HHSSTTEEEEEEE-----TTS---EEEEEE------HHHHHHHHHHH.HT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   6 lvshpaVaeaaVvGvpdevkGealvafVvlkdgsealeeeLkahvrk.elgpyavpkkvvfvdelpktrsGK 76 
                    l ++p+   a ++ ++d+ kGealv f +   + e+++e+L +++r+  ++++avp++++ +++lp   sGK
     CTQ29693.1 634 LGASPDKMHATAI-KQDASKGEALVLFTTD--N-ELTREALLRYARQhGVPELAVPRDIRWLKQLPVLGSGK 701
                    6666777777888.9999*********997..3.3568*******8868999***************99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 5506.78
//
Query:       CTQ29694.1  [L=97]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 836.20
//
Query:       CTQ29695.1  [L=338]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-38  131.1   0.7    1.1e-37  129.9   0.2    1.8  2  Peripla_BP_3  Periplasmic binding protein-like domain
      3e-26   92.5   0.0    4.5e-26   91.9   0.0    1.3  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    1.2e-21   76.3   1.8    3.1e-21   74.9   1.1    2.1  2  LacI          Bacterial regulatory proteins, lacI family
    7.3e-13   48.7   0.0    1.4e-12   47.7   0.0    1.5  1  Peripla_BP_4  Periplasmic binding protein domain
     0.0009   18.6   0.3     0.0034   16.8   0.3    2.0  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I
     0.0078   16.3   0.0      0.017   15.2   0.0    1.5  1  HTH_3         Helix-turn-helix
  ------ inclusion threshold ------
      0.026   14.9   0.3       0.13   12.7   0.1    2.2  2  HTH_31        Helix-turn-helix domain
      0.041   13.7   0.0       0.12   12.2   0.0    1.8  1  HTH_23        Homeodomain-like domain
      0.049   13.4   0.2       0.11   12.3   0.2    1.6  1  MerR          MerR family regulatory protein
      0.063   13.5   0.0       0.16   12.2   0.0    1.6  1  HTH_17        Helix-turn-helix domain
      0.081   13.1   0.0       0.17   12.1   0.0    1.5  1  DUF3853       Protein of unknown function (DUF3853)
       0.11   12.9   0.0       0.19   12.2   0.0    1.4  1  HTH_26        Cro/C1-type HTH DNA-binding domain
       0.13   12.5   0.0       0.33   11.3   0.0    1.6  1  PucR          Purine catabolism regulatory protein-like famil
       0.32   10.8   3.4       0.44   10.4   0.1    2.7  3  HTH_38        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.7   2.2e+03      11      62 ..      61     110 ..      51     138 .. 0.43
   2 !  129.9   0.2   8.5e-41   1.1e-37       1     166 []     168     329 ..     168     329 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.7
                   EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH. CS
  Peripla_BP_3  11 riafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaara 62 
                   +++++   gd  +++  ++ ++++q++ + g+ l +  + ++ + + +a+++
    CTQ29695.1  61 TVGLVV--GDVSDPFFGAMVKAVEQVAYRTGNFLLIGNGYHNVQKERQAIEQ 110
                   555555..44444444444444444443333333333332222222222222 PP

  == domain 2  score: 129.9 bits;  conditional E-value: 8.5e-41
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.........HHHHHCC-SEEEEESSCCHHHHHHHHH CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraal.ll...qalklaalPtAviaasDelAlgvlqal 93 
                   ++hL+++Gh+ri++++  + ++ s +++r++g+  alee glp+n+++v+ ++p++ ++ +a+  ll   +      +  Av +++D++A+g++ +l
    CTQ29695.1 168 TRHLIQQGHTRIGYLC--SNHDISDAEDRLQGYYAALEESGLPCNDRLVTFAEPDESGGEQAMTeLLgrgR------HFSAVACYNDSMAAGAMGVL 256
                   68**************..999999**************************************993223222......226***************** PP

                   CCTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  94 reaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   ++ g+ vP+++s+igfdd  ++++++P lTtvr p+ +++ +aael l+l e+++ap+ ++l +p+lv R+S+
    CTQ29695.1 257 NDNGIDVPREISLIGFDDVLISRYVRPRLTTVRYPIVTMATQAAELALALAEQRPAPEITHLFSPTLVRRHSV 329
                   *****************99999****************************************9999*****97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   3.5e-29   4.5e-26       2     222 ..      60     273 ..      59     304 .. 0.85

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 3.5e-29
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH..HHHHHHHHTT-SEEEEE.-S-GGHHHHHHHHHHT-E.EEEESS--B-T.T CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla..kaidllkakgidgliia.tsdtsfdditakaesgip.vialedaidap.d 93 
                   +++glv+ + ++Pff  +vk++++ a + g + ll+  g+++ ++  +ai++l  ++  +l++   + ++ +++    ++ ip ++++++    p  
    CTQ29695.1  60 ETVGLVVGDVSDPFFGAMVKAVEQVAYRTG-NFLLIGNGYHNVQKerQAIEQLIRHRCAALVVHaKMIPD-EELAGLMKQ-IPgMVLINRI--LPgY 151
                   789***********************9999.6677777777766679**************998356666.899988888.7725555555..4435 PP

                   TS-EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHH CS
  Peripla_BP_1  94 gvPcvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivainde 190
                      cv  dd   +  +t++Li++gh r i  l  ++  + a+ r qG+ aal+e+Gl+  d+ v    +d  ++++a++ell ++  ++a+ ++nd+
    CTQ29695.1 152 ETRCVALDDRYGAWLATRHLIQQGHTR-IGYLCSNHDISDAEDRLQGYYAALEESGLPCNDRLVTFAEPDESGGEQAMTELLGRGRHFSAVACYNDS 247
                   77889999888888*************.********************************************************************* PP

                   HHHHHHHHHHHTT.--GGGEEEEEESSGGGHH CS
  Peripla_BP_1 191 aalGavlalkkeGrlkikeevdsfiesvvvyd 222
                   +a+Ga+ +l+ +G +  + e+     s+ ++d
    CTQ29695.1 248 MAAGAMGVLNDNG-IDVPREI-----SLIGFD 273
                   *************.9999999.....444444 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   1.1   2.4e-24   3.1e-21       1      46 []       3      48 ..       3      48 .. 0.99
   2 ?   -2.1   0.0       2.7   3.5e+03      34      44 ..      77      87 ..      58      88 .. 0.68

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 2.4e-24
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                tikDVArlAGVS+aTVSrv+nn+++ se+ r+ V aame+lnY+Pn
  CTQ29695.1  3 TIKDVARLAGVSVATVSRVINNSPKASEASRQSVGAAMETLNYHPN 48
                9********************************************9 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.7
                HHHHHHHTTB- CS
        LacI 34 VeaameelnYi 44
                  +a+e++ Y+
  CTQ29695.1 77 MVKAVEQVAYR 87
                45777887775 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   1.1e-15   1.4e-12       1     253 [.      62     306 ..      62     311 .. 0.80

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 1.1e-15
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSH..HHHHHHHHHHHHTT-E.EEEESTTGCTTT CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvds..talapalkkakaaGIp.Vvafdsddapsg 94 
                   +g+vv d s+pff a+ +++e+ a   g+   + g++  +++++ ++ie++i   + +++v++     ++la  +k+     Ip +v +++     g
    CTQ29695.1  62 VGLVVGDVSDPFFGAMVKAVEQVAYRTGNFLLI-GNGYHNVQKERQAIEQLIRHRCAALVVHAKMIpdEELAGLMKQ-----IPgMVLINRI--LPG 150
                   789**********************99997777.9**************************9866533666666666.....5546999999..889 PP

                   -CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH..-T.TCEECCEEESTTTCHHHHHHHHHHHHH..TTTECE CS
  Peripla_BP_4  95 erlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke..yp.gikivaevaganwdaekaqqaleallt..anpldg 186
                     + +v+ d    + l+ + l ++  ++   + +l  + + ++ae+r++g  ++l+e   p +  +v+    a+ d++ + qa+++ll   ++   +
    CTQ29695.1 151 YETRCVALDDRYGAWLATRHLIQQGHTR---IGYLCSNHDISDAEDRLQGYYAALEEsgLPcNDRLVT---FAEPDESGGEQAMTELLGrgRH-FSA 240
                   9999*********************977...777799********************55222222222...3379**************6555.*** PP

                   EEESSCCHHHCHHHHHHHTTT..TSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHH CS
  Peripla_BP_4 187 ilaandgmaegalealeaagl..agkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelaval 253
                   + + nd ma ga+  l+++g+    ++ ++g+D    ++       ++ tv  +   ++ +a+ela+al
    CTQ29695.1 241 VACYNDSMAAGAMGVLNDNGIdvPREISLIGFDDVLISRY--VRPRLT-TVRYPIVTMATQAAELALAL 306
                   *********************7333344888875444332..233333.56666666666666666665 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   2.6e-06    0.0034      27      49 ..       1      23 [.       1      24 [. 0.93

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.6e-06
  HTH_Tnp_ISL3 27 srsvkavArqlgvSwtTVwrild 49
                  ++++k+vAr+ gvS  TV r+++
    CTQ29695.1  1 MATIKDVARLAGVSVATVSRVIN 23
                  68******************997 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.3e-05     0.017      11      33 ..       3      25 ..       3      47 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.3e-05
                HHHHHHHHHTSSHHHHHHHHTTS CS
       HTH_3 11 sqeeLAeklGvsrstisriEnGe 33
                +++++A+++Gvs++t+sr +n+ 
  CTQ29695.1  3 TIKDVARLAGVSVATVSRVINNS 25
                789******************93 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   9.9e-05      0.13      16      39 ..       3      26 ..       2      53 .. 0.76
   2 ?   -0.9   0.0       1.7   2.2e+03      24      57 ..     270     303 ..     268     309 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.9e-05
      HTH_31 16 sqeevAerlgvsestlsrlEqGrr 39
                + ++vA+++gvs++t+sr+ +   
  CTQ29695.1  3 TIKDVARLAGVSVATVSRVINNSP 26
                5689**************998655 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.7
      HTH_31  24 lgvsestlsrlEqGrrgrpspavlealaralgld 57 
                 +g+    +sr+ + r + ++   ++ + +a  l 
  CTQ29695.1 270 IGFDDVLISRYVRPRLTTVRYPIVTMATQAAELA 303
                 6777788999999999999988888888876665 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   9.4e-05      0.12      19      39 ..       3      23 ..       2      33 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.4e-05
      HTH_23 19 svreIAreLgvsrrTvyrwlk 39
                +++++Ar+ gvs  Tv+r+++
  CTQ29695.1  3 TIKDVARLAGVSVATVSRVIN 23
                89****************997 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   8.6e-05      0.11       1      16 [.       3      18 ..       3      19 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.6e-05
                EHHHHHHHHTTTHHHH CS
        MerR  1 tIgevAeltGvsprtL 16
                tI++vA+l+Gvs+ t+
  CTQ29695.1  3 TIKDVARLAGVSVATV 18
                8************996 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013      0.16       3      23 ..       3      23 ..       2      26 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
      HTH_17  3 tveEaAelLgvsrstvyrlir 23
                t++++A+l gvs++tv r i+
  CTQ29695.1  3 TIKDVARLAGVSVATVSRVIN 23
                9****************9886 PP

>> DUF3853  Protein of unknown function (DUF3853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00013      0.17      47      66 ..       3      22 ..       1      36 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
     DUF3853 47 GikglarllGislptanrik 66
                 ik++arl G+s++t++r+ 
  CTQ29695.1  3 TIKDVARLAGVSVATVSRVI 22
                699***************74 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00015      0.19      11      36 ..       1      27 [.       1      33 [. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
      HTH_26 11 i.tkseLargtgisaatlsrlvkgkpe 36
                + t++++ar +g+s at+sr  ++ p+
  CTQ29695.1  1 MaTIKDVARLAGVSVATVSRVINNSPK 27
                5589********************987 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00025      0.33      39      85 ..      86     129 ..      63     138 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
        PucR  39 lrggeLllttglalkddpealaelvrelaeagvaaLviklgreipee 85 
                 +r g++ll+ g + + + ++ ++ +++l ++ +aaLv+   + ip+e
  CTQ29695.1  86 YRTGNFLLI-GNGYH-NVQKERQAIEQLIRHRCAALVVHA-KMIPDE 129
                 456666665.34444.577889****************99.577765 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00034      0.44      22      41 ..       3      22 ..       2      24 .. 0.93
   2 ?   -0.2   0.3      0.68   8.7e+02       8      18 ..     103     113 ..     102     117 .. 0.83
   3 ?   -3.5   0.0       7.5   9.5e+03      10      17 ..     169     176 ..     167     178 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00034
      HTH_38 22 slreIArrLgrspsTIsREl 41
                +++++Ar+ g+s  T+sR +
  CTQ29695.1  3 TIKDVARLAGVSVATVSRVI 22
                799***************98 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.68
      HTH_38   8 eeReeIerlla 18 
                  eR+ Ie+l+ 
  CTQ29695.1 103 KERQAIEQLIR 113
                 69******975 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 7.5
      HTH_38  10 ReeIerll 17 
                 R+ I++++
  CTQ29695.1 169 RHLIQQGH 176
                 78888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2476.31
//
Query:       CTQ29696.1  [L=159]
Description: putative acetyltransferase, (GNAT) family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-12   48.2   0.0    1.4e-12   47.8   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.4e-10   40.1   0.0    4.9e-10   39.6   0.0    1.2  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    2.2e-09   37.6   0.1    3.5e-09   37.0   0.1    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    3.6e-09   36.6   0.0    4.5e-09   36.3   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    3.4e-05   23.9   0.0    6.2e-05   23.0   0.0    1.4  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
     0.0047   17.6   0.1     0.0056   17.3   0.1    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.025   14.5   0.1      0.068   13.2   0.1    1.7  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   5.6e-16   1.4e-12       3     117 .]      15     129 ..      13     129 .. 0.77

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 5.6e-16
                     HHHHHHHHHTH.HHHHHHHHHHHHHH...HHSTTC...EEEEEEETTEEEEEEEEEEEET..TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHH CS
  Acetyltransf_1   3 dlvellvesff.ppnedaseeefees...fsleae...gllvaeedgeliGfisllkipd..ekggvayieslaVspeyrgkGlGsaLlealeer 88 
                     ++ ++l+  f  ++ ++ +++    s   +s++ae    +++a e+++l+G+i+l+  +         ++  l+V+p++rg+Gl+ +L ++++++
      CTQ29696.1  15 QVTDWLWQAFGgETLPRQFFA----SivqHSQTAEalpLTFIAVEGEQLLGTIGLWRCDLisRQDLFPWLAALYVAPAARGQGLAGKLQRHVIDY 105
                     566777766553222233333....233345566644455669999**************99556778999************************ PP

                     HHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  89 areegikkivlaveedndaairlYeklGF 117
                     ar+ g+++++l       a + +Ye++G+
      CTQ29696.1 106 ARRAGFRELYL-----YSACRDFYERFGW 129
                     ***********.....56779******96 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   1.9e-13   4.9e-10       7     127 ..      10     131 ..       7     132 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 1.9e-13
                     GGGHHHHHHHHHHHTT----H..HHHHHHHHHHTTS.......EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHH CS
  Acetyltransf_9   7 eedldevlellkyaFqdeespleeireyfrkllees.......rvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskL 94 
                     ++  ++v + l +aF+ e+ p+    ++f  ++++s        +++a ++++l g+++l +++l  +   ++  ++++  vap  rg+g++ kL
      CTQ29696.1  10 PQYAPQVTDWLWQAFGGETLPR----QFFASIVQHSqtaealpLTFIAVEGEQLLGTIGLWRCDLISRQDLFP--WLAALYVAPAARGQGLAGKL 98 
                     5667899999999******996....56666666543344444899**************9999988777776..77888899************ PP

                     HHHHHHHHHHTT--EEEE--SSHHHHHTTT-EE CS
  Acetyltransf_9  95 laraleemreegqplsllfPssipiYrrfGyei 127
                      +++++++r  g +  +l+ + +++Y+rfG+++
      CTQ29696.1  99 QRHVIDYARRAGFRELYLYSACRDFYERFGWRY 131
                     *******************************98 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   1.4e-12   3.5e-09       5      75 ..      50     130 ..      45     131 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.4e-12
                     EEEEEETTEEEEEEEEEEES........TCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEEEEEEEETHHHHHH.HHHHTTEE CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld........aeitrlaVdpeyrgkGiGraLleaae.....kgiileqlelnaekaik.fYeklGFe 75 
                     +f+a ++++ +G+i+l+++d         ++  l+V+p++rg+G++ +L ++++      g++  +l+l +  a + fYe++G++
      CTQ29696.1  50 TFIAVEGEQLLGTIGLWRCDlisrqdlfPWLAALYVAPAARGQGLAGKLQRHVIdyarrAGFR--ELYLYS--ACRdFYERFGWR 130
                     5789999999*********98887766445555****************99833344456643..467854..4445******87 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.8e-12   4.5e-09      32     110 ..      49     133 ..       9     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.8e-12
  Acetyltransf_10  32 lllvaeeggkivGviel.rdgs........hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavg 110
                      l+++a eg++++G+i+l r +          ++ l+V+p++rgqG++ +L  +v+++a+++g + el + +  + ++fYe++G++ +g
       CTQ29696.1  49 LTFIAVEGEQLLGTIGLwRCDLisrqdlfpWLAALYVAPAARGQGLAGKLQRHVIDYARRAGFR-ELYLYS--ACRDFYERFGWRYIG 133
                      5789999********9977766888899999****************************99999.888877..589********9876 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.4e-08   6.2e-05      30      59 ..      83     112 ..      78     128 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.4e-08
  Acetyltransf_CG  30 TeVpeelrGkGiAkkLvkaalddareeglk 59 
                       +V ++ rG+G+A+kL ++++d+ar++g++
       CTQ29696.1  83 LYVAPAARGQGLAGKLQRHVIDYARRAGFR 112
                      589***********************9986 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   2.2e-06    0.0056      27     117 ..      24     114 ..       4     132 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.2e-06
  Acetyltransf_3  27 ylpepltleeaeewlerawaeeseeegygwaivlkdtgviGsvglrdleeedee....aelgymlapsfwgkGyateavralleyafeelglerl 117
                     +++e+l+++   + +++   + +e   ++++ v+ ++  +G++gl++ +  +++    +   +++ap+++g+G+a    r +++ya ++ g ++l
      CTQ29696.1  24 FGGETLPRQFFASIVQH--SQTAEALPLTFIAVEGEQ-LLGTIGLWRCDLISRQdlfpWLAALYVAPAARGQGLAGKLQRHVIDYA-RRAGFREL 114
                     35556655556666663..233334446677754444.7*******999998889999999999**********************.44445544 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.6e-05     0.068      23      78 ..      79     130 ..      68     136 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.6e-05
                 SEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-E CS
        FR47  23 elgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfe 78 
                  l al+v p +r++Gl+++l + ++   +++g   l +      + + +ye+ G++
  CTQ29696.1  79 WLAALYVAPAARGQGLAGKLQRHVIDYARRAGFRELYLYS----ACRDFYERFGWR 130
                 689*********************9998888876666553....456677777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1308.68
//
Query:       CTQ29697.1  [L=257]
Description: Uxu operon regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-22   78.5   0.1    5.3e-22   77.2   0.1    1.7  1  GntR      Bacterial regulatory proteins, gntR family
    5.6e-20   72.0  10.5    8.2e-20   71.5  10.5    1.2  1  FCD       FCD domain
  ------ inclusion threshold ------
      0.026   14.9   0.0      0.051   13.9   0.0    1.4  1  Rrf2      Transcriptional regulator
       0.07   13.0   0.0       0.12   12.3   0.0    1.3  1  TrmB      Sugar-specific transcriptional regulator TrmB


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.1   1.2e-25   5.3e-22       1      64 []      12      75 ..      12      75 .. 0.99

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 1.2e-25
                HHHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  1 lyeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                +y+++ + Lr++I +g++  G++LP+er++a+ +gVsrt vReAL +Le +g v +rqg+G++V
  CTQ29697.1 12 PYQEIGDDLRAQIAQGRYPVGSRLPPERHIAETYGVSRTIVREALLMLELQGTVDIRQGSGVYV 75
                59*************************************************************9 PP

>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5  10.5   1.8e-23   8.2e-20       1     124 [.      98     224 ..      98     225 .. 0.94

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 1.8e-23
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrr..lrrlals....sperl 93 
                 +++++R+lLE+ +a+ aa+ at ad++ l++++e+ ++a+a +d   + +  r FH +la+a++n++l +++e+++ ++    l++        s++++
  CTQ29697.1  98 EILQARQLLESNIAAFAAKMATRADIDNLKRIIEQEQRAIALNDT--AQDNARLFHLVLAGATQNQMLLATVERIWLQMDSspLWQQF-NvhiaSRAWR 193
                 799**************************************9998..9********************************87644443.34777***** PP

         FCD  94 eeslaeHraildAirardadaAraamrrHle 124
                  ++l + +++l+A+r+rd+ +A +am++Hle
  CTQ29697.1 194 LKWLGDRQTLLAALRRRDVMGAWQAMWQHLE 224
                 ******************************8 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.1e-05     0.051      29      66 ..      39      75 ..      32      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCEE CS
        Rrf2 29 eeiaerqnispsylekilakLrkaglvksvrGkgGGyr 66
                ++iae +++s+++++  l +L+ +g v  ++G  G y+
  CTQ29697.1 39 RHIAETYGVSRTIVREALLMLELQGTVDIRQGS-GVYV 75
                68******************************9.5555 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.6e-05      0.12      26      61 ..      39      75 ..      37      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
                CHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST.TTE CS
        TrmB 26 deiaeelgvprskvYevLrsLedkGlVerekgr.pkl 61
                + iae  gv+r+ v e+L  Le  G V++++g+  ++
  CTQ29697.1 39 RHIAETYGVSRTIVREALLMLELQGTVDIRQGSgVYV 75
                679****************************985444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2240.06
//
Query:       CTQ29698.1  [L=475]
Description: 6-phospho-beta-glucosidase GmuD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-99  331.3   2.0    8.2e-99  331.1   2.0    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1
     0.0015   18.0   0.7     0.0029   17.1   0.7    1.4  1  Cellulase      Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.1   2.0  9.1e-103   8.2e-99       3     450 ..       6     463 ..       4     466 .. 0.91

  Alignments for each domain:
  == domain 1  score: 331.1 bits;  conditional E-value: 9.1e-103
                    GGS-TT-EEEEE--HHHHH--TTSTT---BHHHHHHHHGGGST.TS---SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHSTTS.TT---HHH CS
  Glyco_hydro_1   3 etfpedFlwgaataayqiEGawnedGkgesiwDtftetpgkvl.egsngdvacdsYhrykeDvallkelgvkayrfSisWpRilPkG.egeinekG 96 
                     t+p+dF+ gaa++a+q EG   +     s  D + ++  +v  +g+   va+d+ +r++eDv+l+k  g+++yr Si W+R l +  + +++e+ 
     CTQ29698.1   6 MTIPDDFILGAAASAWQTEGWSGKKPGQDSWPDLWYKNDRHVWhNGYGPAVATDFINRFQEDVQLMKLAGLTHYRTSINWSRFLTDYeNVTVDEEY 101
                    689*****************665555556667988888777651566699************************************98889***** PP

                    HHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH.H-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHTSS-STT-S-TTTHHHH CS
  Glyco_hydro_1  97 layYerLidelleagieplvTlyHwdlPqaLqd.eGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvvallgyltgefaPgkkdleaaye 191
                     ayY++L+d+ll++gi+p++ l H++lP  L + +Ggw ++++++ f +yae vf+r++ kv +w+TfnEp vv++  yl +   P ++++++ ++
     CTQ29698.1 102 AAYYDQLFDALLANGITPMICLEHYELPGYLLEkYGGWGSKTVVELFVRYAEKVFARYHPKVTRWFTFNEPIVVQTRVYLDALRWPYEQNTSTWMQ 197
                    ****************************887776************************************************************** PP

                    HHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGGG..S----HHHHHHH.TT- CS
  Glyco_hydro_1 192 aaHnlllaharavklykevaqkgkigivlnlslaeplseseedkeaaeraleflngwfldpvvkGdYpeemkellrergalpeiteedkell.kgk 286
                     + + +la a +vk+++e ++ g++g +ln ++++p s  ++d +aae ++ f n++fldp+v+G +p e+  ll+++  + e  eed++++ +++
     CTQ29698.1 198 WNYHKVLATASVVKRFRELGYPGTVGCILNPEVTYPRSRAPHDLRAAEIYDLFYNRMFLDPLVHGVWPPELLALLEQHQVTWETSEEDLAVIrEHT 293
                    ********************************************************************************************7789 PP

                    -SEEEEEEEEEEEEEE--...-STT---SSGGGGG-..SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE----EE-BSSS....HHH-- CS
  Glyco_hydro_1 287 adflglnyYtsrlvknkeseeaslskteekkleeev..dpslpktdigwiiepeglrkllellkkeYqklpiyiteNGlgakdeiee....gkveD 376
                    +d lg+n Y+ + vk+        +  + +   e         +++ gw+i+p+ + ++ +++k++Y ++p +++e G+g+++e +     g ++D
     CTQ29698.1 294 VDELGINLYYPHRVKAPSRAWHPHTPFHPAWYYEPFelPGRRMNASRGWEIYPQIIFDMAMRIKNDYRNIPWFVAESGMGVENEGQFrnreGVIDD 389
                    9***********999887443333333344444444222344456679********************************9997543447799*** PP

                    HHHHHHHHHHHHHHHHHHHTT--EEEEEEE-SB----GGGTTSEE--SEEEETTTTTEEEE-HHHHHHHHHHH- CS
  Glyco_hydro_1 377 dkRidYlkehlnevkkaiedgvdlkgYvawsllDnfewaegyskrfGlvyvdrnetleRtpkkSakwykeviek 450
                    ++Ri+++ ehl +  +a e g++ +gY++w+++Dn++ ++++++r+Gl+ +d ++++ R+pk+Sa+w++++ e+
     CTQ29698.1 390 SYRIRFISEHLWHTLRAREAGANCQGYMLWAFTDNVSPMNAFKNRYGLIEIDLQNHRARRPKASAHWFRQLGER 463
                    *********************************************************************99776 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.7   3.2e-07    0.0029      22     152 ..      63     199 ..      37     209 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.2e-07
                 SHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS..TTTCSSSSTTTTHHHHHHHHHHHHHHHHHHHTT CS
   Cellulase  22 ttkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHse..egwltkadgnssedtaeeffkklwtqiAerykk 118
                   ++  +++k ag ++ R  + w + +++ ++++vde++ + ++++ ++  +ng+  ++ + ++  +g+l ++ g   ++t  e f  + +++ +ry  
  CTQ29698.1  63 RFQEDVQLMKLAGLTHYRTSINWSRFLTDYENVTVDEEYAAYYDQLFDALLANGITPMICLEHYelPGYLLEKYGGWGSKTVVELFVRYAEKVFARY-- 159
                 457889999******************999*******************************999996666666666677888889999999999999.. PP

                 TTTTEEEESSSS--STTCT.....CCT.CHHHTTHHHHHH CS
   Cellulase 119 ndevvifelmNEPhgnntg.....aew.tseeadevkaya 152
                  ++v  + ++NEP  ++t        w  ++++ ++++++
  CTQ29698.1 160 HPKVTRWFTFNEPIVVQTRvyldaLRWpYEQNTSTWMQWN 199
                 666777789******8877999886677666667777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3676.21
//
Query:       CTQ29699.1  [L=445]
Description: PTS system, lactose/cellobiose family IIC component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-44  152.7  28.8    1.2e-44  152.7  28.8    1.8  2  PTS_EIIC  Phosphotransferase system, EIIC


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7  28.8   6.5e-49   1.2e-44       2     324 .]      29     360 ..      28     360 .. 0.88
   2 ?   -1.0   0.7      0.04   7.1e+02     115     140 ..     396     421 ..     363     427 .. 0.53

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 6.5e-49
    PTS_EIIC   2 dgfmlpiplliagGillglgn...lpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiaygl.akggkgvaglagligllafnllaai 96 
                 ++f+  +p++i+g++ ++++n    p+ + l  +s     ++l  l+ i  ++++a++ +L + + + i+++l    +   +++ gl++++ f  ++++
  CTQ29699.1  29 SAFITLMPVIIVGAFSVLISNmvlDPK-NGLASFS---SLSFLAALKPITSALNYATLNFLNIGAVFLIGIELgR-INGIKSLFPGLLAVICFICVTPT 122
                 79*******************774333.3444444...4677778888*************************53.33334446777777777778899 PP

    PTS_EIIC  97 svlllaagalasakasilgiktlstgvfgaiivgllaaylynkfek..nitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalg. 192
                  v ++++g+   +k ++l  ++++ ++f ++++++l++++y ++e   +++ik+P+ +p++v+ +f+++i+++++ ++++ ++ l+ +++ + l   + 
  CTQ29699.1 123 TVEMMVDGQMHVVKDVLLRQFSDTRSLFLGMFIAILSVEIYCWLEGrkGLKIKMPDTVPPNVSASFSALIPAIITTTAIATFGFLFHQLTGMYLYDAVy 221
                 999999999889********************************98889************************99999999999998888888888777 PP

    PTS_EIIC 193 .ll....lggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvs..vmfGgpgatlalyiaaflekkskq 284
                  ++        +sl g+l++ f+ +l++++G+H+  ++ ++ +++   +++ n +++ +gke+++i+t +f++  + +Gg+g t++l+ia +++ ++k+
  CTQ29699.1 222 qVVqqplERVVQSLPGILLLMFVAQLFWVIGIHGNQMIKPIREPLLLGAITVNMSAFEQGKEVPNIITMPFWDvyMSIGGSGLTIGLLIAVMIATRRKE 320
                 5226665444567899****************************9888888899********************************************* PP

    PTS_EIIC 285 kkllgsaaltpflfGItepleFgfpfvlnlllfipallag 324
                 +k++ ++++ p+lf+I+ep++Fg+p+ ln++l+ip+++++
  CTQ29699.1 321 MKEIAKLSIGPGLFNINEPVIFGMPIMLNPILAIPFIITP 360
                 **************************************98 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.04
    PTS_EIIC 115 giktlstgvfgaiivgllaaylynkf 140
                 ++   +  v++++i+ ++a+ +y  f
  CTQ29699.1 396 STAGSMGAVVTQLICIVVAVLIYLPF 421
                 33334444455555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3374.74
//
Query:       CTQ29700.1  [L=336]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-32  110.7   0.0    8.7e-31  107.5   0.0    2.1  2  Peripla_BP_3  Periplasmic binding protein-like domain
      7e-29  101.1   0.0      9e-29  100.8   0.0    1.1  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    4.5e-20   71.2   0.1    8.8e-20   70.2   0.1    1.5  1  LacI          Bacterial regulatory proteins, lacI family
      8e-18   64.9   0.0    1.1e-17   64.4   0.0    1.2  1  Peripla_BP_4  Periplasmic binding protein domain
      2e-05   24.4   0.0    7.7e-05   22.5   0.0    1.7  2  Peripla_BP_6  Periplasmic binding protein
     0.0018   18.5   0.0     0.0038   17.5   0.0    1.5  1  PucR          Purine catabolism regulatory protein-like famil
  ------ inclusion threshold ------
      0.015   15.6   0.0      0.049   14.0   0.0    1.9  1  HTH_31        Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.19   4.9e+02       4      82 ..      54     123 ..      51     143 .. 0.62
   2 !  107.5   0.0   3.4e-34   8.7e-31       1     166 []     169     329 ..     169     329 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.19
                   HHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH......HHHHHCC-SEEEEESS CS
  Peripla_BP_3   4 LvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalll.qalklaalPtAviaas 82 
                   L+++  ++i+++   +  +  +  ++++ + +  e+ g +l +t ++++++ +++a++  l   +++      +A+i ++
    CTQ29700.1  54 LANQTSNSIGLVV--STFDGFYFGRLLQQASRQTEAWGKQLIVTDGHDTPEREEEAVQM-L-AdRQC------DAIILYT 123
                   6666667777777..44444555566666777778888888888888776665555554.3.22233......5666555 PP

  == domain 2  score: 107.5 bits;  conditional E-value: 3.4e-34
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH.HHCC-SEEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal.klaalPtAviaasDelAlgvlqalrea 96 
                   ve+L+ +Ghr+ia+i+   + ++++ ++r++g+r+al ++g++ ++ +v+  d++   +++      +l + +a+  A++ ++D +Alg+ +al++a
    CTQ29700.1 169 VEYLITQGHRDIACIT--VPMHTPTGQARLQGYRNALIKHGIEWDPSRVKYGDSTMTRGYELCR---ELlDEKARFSALFSCNDDMALGASKALHQA 260
                   79**************..888889*******************999999999999999999877...3334444447******************** PP

                   T--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEE.E--.EEE--GGG CS
  Peripla_BP_3  97 glrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvl.lpp.elveReSt 166
                   glr+P+d+s++gfdd + a+ + P l+tv++p++ +  +a+++ ++l   +++p e++    + +lv+ReS+
    CTQ29700.1 261 GLRIPQDVSLFGFDDAPSAKWLEPGLSTVYLPIDNMITTAIDQAIKLA--NQQPIETIPpF-TgTLVLRESV 329
                   ***********************************************9..66666666634.448*****97 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   3.5e-32     9e-29       2     228 ..      60     278 ..      59     303 .. 0.94

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 3.5e-32
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTTS- CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaes.gipvialedaidapdgvP 96 
                   +++glv+   d  +f  l++ +++  ++ g ++++  + + ++ + +a++ l+ ++ d++i+ t+  s  +i    +s ++p + +++ + ++    
    CTQ29700.1  60 NSIGLVVSTFDGFYFGRLLQQASRQTEAWGKQLIVTDGHDTPEREeEAVQMLADRQCDAIILYTRHMSEKAIMSLINSiAMPLVVINRDVAQA-RER 155
                   689*****************************************999*****************************************98888.889 PP

                   EEEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHHH CS
  Peripla_BP_1  97 cvipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaal 193
                   cv++++ +a+ ++ ++Li +gh+  ia++  p    t ++r qG+++al ++G e     v  g+++++ ++e+  ell ++  ++a+   nd +al
    CTQ29700.1 156 CVFFEQQEAAFQAVEYLITQGHRD-IACITVPMHTPTGQARLQGYRNALIKHGIEWDPSRVKYGDSTMTRGYELCRELLDEKARFSALFSCNDDMAL 251
                   ************************.************************************************************************ PP

                   HHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS CS
  Peripla_BP_1 194 GavlalkkeGrlkikeevdsfiesvvvydgLkkaq 228
                   Ga  al ++G l+i+++v     s+ ++d    ++
    CTQ29700.1 252 GASKALHQAG-LRIPQDV-----SLFGFDDA--PS 278
                   **********.*******.....77777665..44 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.1   3.4e-23   8.8e-20       1      46 []       3      48 ..       3      48 .. 0.99

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 3.4e-23
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                t+ DV  +AGVSkaTVSrvLn++++V+e+tr+ V++ameel+Y+Pn
  CTQ29700.1  3 TMLDVSIRAGVSKATVSRVLNGTGQVKESTRQQVFKAMEELGYRPN 48
                899******************************************9 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   4.4e-21   1.1e-17       1     256 [.      62     310 ..      62     312 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 4.4e-21
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--..SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT- CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivap..vdstalapalkkakaaGIpVvafdsddapsge 95 
                   ig+vv++++  +f  + +++  + ++ g++ +v+ d++ + +++ ++++ + ++++d+ii+    ++ +a+ + ++ ++   +p v++++d  ++  
    CTQ29700.1  62 IGLVVSTFDGFYFGRLLQQASRQTEAWGKQLIVT-DGHDTPEREEEAVQMLADRQCDAIILYTrhMSEKAIMSLINSIA---MPLVVINRD--VAQA 152
                   899*****************************96.999999*******************6651166688888888877...8********..9999 PP

                   CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEE.STTTCHHHHHHHHHHHHHTT.TECEEEES CS
  Peripla_BP_4  96 rlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaeva.ganwdaekaqqalealltan.pldgilaa 190
                   r  +v f +++a+ ++ eyl  +      +++ ++    +p  ++r++g r++l +  gi+  ++ + +++ + +++++   +ll ++    + +++
    CTQ29700.1 153 RERCVFFEQQEAAFQAVEYLITQGH---RDIACITVPMHTPTGQARLQGYRNALIK-HGIEWDPSRVkYGDSTMTRGYELCRELLDEKaRFSALFSC 245
                   999********************99...57****99999**************766.48888885554889***************6635******* PP

                   SCCHHHCHHHHHHHTTT..TSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT CS
  Peripla_BP_4 191 ndgmaegalealeaagl..agkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkG 256
                   nd+ma+ga +al +agl    +v ++g+D  p   ++++ G   +tv+ +  ++  +a++ a +l++ 
    CTQ29700.1 246 NDDMALGASKALHQAGLriPQDVSLFGFDDAPS-AKWLEPGL--STVYLPIDNMITTAIDQAIKLANQ 310
                   *****************9766677*****7665.57888888..489999999999999999988765 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.4     1e+03     295     314 ..      27      46 ..      12      60 .. 0.76
   2 !   22.5   0.0     3e-08   7.7e-05      44     230 ..      91     276 ..      91     310 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.4
                   CCTHCCHHHHHHHHHHS-BE CS
  Peripla_BP_6 295 aagsltreavraaleslgfd 314
                   ++++ tr++v +a+e+lg+ 
    CTQ29700.1  27 QVKESTRQQVFKAMEELGYR 46 
                   44678999999999999975 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 3e-08
                   EEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEEESS-HHCCTTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEE CS
  Peripla_BP_6  44 elverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvigpagltgekcspyvfslgpsysaqasalveylakelggkkval 140
                   +l++ D + +p+r  ea++ l d +++da++ ++     +a++++++    p++ +  +  ++  + vf     ++  a  +veyl++ +g + +a 
    CTQ29700.1  91 QLIVTDGHDTPEREEEAVQMLAD-RQCDAIILYTRHMSEKAIMSLINSIAMPLVVINRDVAQARERCVFF---EQQEAAFQAVEYLIT-QGHRDIAC 182
                   58899******************.9999***************************987777777777775...578889999*****9.6******* PP

                   EEES..SHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHH...HHHHHHTTT-SE.EEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHH CS
  Peripla_BP_6 141 vyad..yafgregiaalkaaakaaGgevvgeepvplgttdfsa...qvlqikaagada.vllagtgadlaallkaaaeaGldakrillvswsgsee 230
                   +++   ++ g++  ++++ a+ ++G+e  ++ +v+ g++ ++    +++++ +++a +  l++   +++  + ka+ +aGl+  ++ +  ++++++
    CTQ29700.1 183 ITVPmhTPTGQARLQGYRNALIKHGIEW-DPSRVKYGDSTMTRgyeLCRELLDEKARFsALFSCNDDMALGASKALHQAGLRI-PQDVSLFGFDDA 276
                   **6667*********************6.67777777766665555************978888889999**********994.355555555554 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.5e-06    0.0038      41     104 ..      89     149 ..      80     152 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.5e-06
        PucR  41 ggeLllttglalkddpealaelvrelaeagvaaLviklgreipeelieaadelglPlielpeev 104
                 g++L++t g   +d+pe  +e v+ la++++ a+++++ +  +++++++ ++  +Pl++++++v
  CTQ29700.1  89 GKQLIVTDG---HDTPEREEEAVQMLADRQCDAIILYTRHMSEKAIMSLINSIAMPLVVINRDV 149
                 567777777...45677789******************778899****************9987 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.9e-05     0.049      19      50 ..       6      39 ..       3      52 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.9e-05
      HTH_31 19 evAerlgvsestlsrlEqGrrgrp...spavleal 50
                +v  r+gvs++t+sr+ +G+ + +   +++++ ++
  CTQ29700.1  6 DVSIRAGVSKATVSRVLNGTGQ-VkesTRQQVFKA 39
                6888****************96.834444455444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2554.15
//
Query:       CTQ29701.1  [L=420]
Description: diaminopimelate decarboxylase, PLP-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-63  212.7   0.0    6.4e-63  212.4   0.0    1.1  1  Orn_Arg_deC_N    Pyridoxal-dependent decarboxylase, pyridoxal
    8.2e-26   90.1   0.0    9.8e-26   89.9   0.0    1.2  1  Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-termina


Domain annotation for each model (and alignments):
>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.4   0.0   7.1e-67   6.4e-63       2     247 .]      33     275 ..      32     275 .. 0.97

  Alignments for each domain:
  == domain 1  score: 212.4 bits;  conditional E-value: 7.1e-67
                    HHHHHHHHHHHHHCTCCEEEEEGGG---HHHHHHHHHTTEEEEESSHHHHHHHHHCTTT....GGGEEEEESS--HHHHHHHHHCTHTEEEESSHH CS
  Orn_Arg_deC_N   2 asierklkrwkkalprikvfYavKansdlavlellaelGlgldcaSkaElelvlaagvs....periifanpckqreelryalekgvkvvtvdnve 93 
                    a+i+r++ +  ++++   v +a+Ka+s++++l+l++e+G+++d++S +E+e++laag++    pe+i+f+++  + ++l ++++ ++  v++++ +
     CTQ29701.1  33 AQIIRRQIAQLSQFD--VVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYDpqqnPEDIVFTADLIDDATLDRVKALQIP-VNAGSID 125
                    589999999999999..9****************************************9888899***********************.******* PP

                    HHHHHHHHHCCEEEEEEEE-SCCSSSSTCCCSSSTTSSSSEEHCHHHHHHHHHHHHTTEEEEEEE---BSSC-SCHHHHHHHHHHHHHHHHHH.HH CS
  Orn_Arg_deC_N  94 eleklaklapeakvllRiktdvsaatcelistggessKFGaaleeavealleaakeenlqlvGvsfHvGSgvsdleafvkavekalklfdela.el 188
                    +l +l +++p+++v+lR+++++ +++++ ++tgge+sK+G+++ ++++a+le++++ +lqlvG+++H+GSgv+     + ++e++++++++++  +
     CTQ29701.1 126 MLSQLGEVSPGHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWY-SHLPAALEVMRRYQLQLVGIHMHIGSGVD-----YGHLEQVCGAMVRQVvDF 215
                    *******************************************.*****************************.....9***********9999** PP

                    T---SEEE--S-BS-HCSTTSSSSTHHHHHHHHHHHHHHHHH..TSSS-EEEE--SHHHHG CS
  Orn_Arg_deC_N 189 GvklkiLdvGGGfgveyeeeeeplkleeiaekirealeeafp..gdkevtiiaEpGRalva 247
                    G++l+++++GGG+++ y+e+ee++++++++  ++ a e++++  g++ v++ +EpGR+lva
     CTQ29701.1 216 GQDLQAISAGGGLSIPYREGEEAIDTAHYYGLWNRAREQIAAhlGHP-VKLEIEPGRFLVA 275
                    *****************************************984555.9**********98 PP

>> Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.0   1.1e-29   9.8e-26       5      98 .]      32     376 ..      28     376 .. 0.72

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 1.1e-29
                      E............................................................................................. CS
                      x............................................................................................. RF
  Orn_DAP_Arg_deC   5 d............................................................................................. 5  
                      d                                                                                             
       CTQ29701.1  32 Daqiirrqiaqlsqfdvvrfaqkacsnihilrlmreqgvkvdsvslgeieralaagydpqqnpedivftadliddatldrvkalqipvnagsid 125
                      5555555555555555555555555555555555555555555555555555555555666666666666666666666666666666666666 PP

                      .............................................................................................. CS
                      .............................................................................................. RF
  Orn_DAP_Arg_deC   6 .............................................................................................. 5  
                                                                                                                    
       CTQ29701.1 126 mlsqlgevspghrvwlrvnpgfghghsqktntggenskhgiwyshlpaalevmrryqlqlvgihmhigsgvdyghleqvcgamvrqvvdfgqdl 219
                      6666666666666666666666666666666666666666666677777777777777777777777777777777777777777777777777 PP

                      ........................................................GGEEEEEEEEEEEEETCEEEEEES--TTTS-HHHHCTT CS
                      ........................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC   6 ........................................................eagvLvtrViavkesekkkfvivdaGmndllrpalygs 43 
                                                                              e+gvLv++V +vke+++++fv +daG+ndl+rpa+ygs
       CTQ29701.1 220 qaisaggglsipyregeeaidtahyyglwnrareqiaahlghpvkleiepgrflvaESGVLVSQVRSVKEMGSRHFVLIDAGFNDLMRPAMYGS 313
                      777777777777777777777777778888888888888888888888888888889***************99******************** PP

                      -S-E.ESBTT-SCEEC.EEEEEEEE-SSSSTT-EEEEE.......EEEEE--TT-EEEESS-S CS
                      xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC  44 fhei.pvkeeeaekeeeeeeevdvvGptCesgDvlakd.......relpelevGdllafedaG 98 
                      +h+i ++  + ++ +++++ e+ v+Gp+CesgDv++++       r lp++++Gd+l+++d+G
       CTQ29701.1 314 YHHItALAGDGRDLSAAPQVETVVAGPLCESGDVFTQQeggkvetRLLPAVAPGDYLVLHDTG 376
                      ****777667777888899*******************99999888***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3378.34
//
Query:       CTQ29702.1  [L=239]
Description: hypothetical protein CH1034_280307 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   11.5   0.3       0.21   11.0   0.3    1.2  1  FAM92     FAM92 protein


Domain annotation for each model (and alignments):
>> FAM92  FAM92 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   1.2e-05      0.21     116     175 ..      97     157 ..      80     169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.2e-05
       FAM92 116 rddlklal.iardkevkrlrqleelkskfsadrsaaeselfkakmevsrtskeleeiinnf 175
                  ddl++ l iar+k  +++rq    k++ + dr  a +el +a   ++ t + +   +n +
  CTQ29702.1  97 GDDLQADLrIAREKRRQQQRQKGLGKHRQTGDRQLALAELAQALGGADDTVQAIPGALNLL 157
                 4999998769*********************************999999988887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1901.55
//
Query:       CTQ29703.1  [L=308]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-43  148.5   6.7    2.1e-43  148.1   6.7    1.2  1  LysR_substrate  LysR substrate binding domain
    2.2e-19   69.1   2.3    3.1e-19   68.7   0.9    2.1  2  HTH_1           Bacterial regulatory helix-turn-helix protein
    0.00022   20.9   0.1    0.00049   19.8   0.1    1.5  1  HTH_30          PucR C-terminal helix-turn-helix domain
    0.00097   18.9   0.0     0.0021   17.8   0.0    1.5  1  HTH_23          Homeodomain-like domain
     0.0034   17.5   0.0     0.0089   16.1   0.0    1.7  1  HTH_28          Helix-turn-helix domain
  ------ inclusion threshold ------
      0.031   14.3   0.1      0.084   12.9   0.1    1.7  1  HTH_Crp_2       Crp-like helix-turn-helix domain
      0.044   13.7   0.0      0.084   12.8   0.0    1.4  1  Phage_NinH      Phage NinH protein
      0.059   12.8   0.1       0.13   11.7   0.1    1.6  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
      0.071   13.0   0.0       0.18   11.7   0.0    1.7  1  MarR_2          MarR family
       0.17   11.9   0.0       0.38   10.8   0.0    1.6  1  DUF2089         Protein of unknown function (DUF2089)


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   6.7   1.2e-46   2.1e-43       4     208 ..      92     294 ..      89     295 .. 0.97

  Alignments for each domain:
  == domain 1  score: 148.1 bits;  conditional E-value: 1.2e-46
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsl 98 
                      +g+L+i++ p++++++lp ll+ f+ ryPev+l++v  +s+ l+++l + + Dl+++    +++g e +pL++   v+v++++hpLa+++ +++
      CTQ29703.1  92 RQGELSIACLPVFSQSFLPLLLPPFLSRYPEVSLQIVPQESPLLEEWLSAQRHDLGLTETLHTPAGTERTPLLTLNEVCVLPAGHPLAAQATLTP 186
                     68********************************************************************************************* PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrel 193
                     +d+++e+ i l++  ++r+ll++++ e+++k+r ++e+ s+++++a+v+aG Gi+++  +++ d  ad ++v++ ++  ++p++++l+++ +r++
      CTQ29703.1 187 ADFQGENYISLSRTDSYRQLLDALFLEHQVKRRMVVETHSAASICAMVRAGAGISVVNPLTALD-YADSGVVVRRFSV-EVPFTVSLIRPLHRPR 279
                     *************************************************************955.77777777*****.**************** PP

                     HHHHHHHHHHHHHHH CS
  LysR_substrate 194 spavrafidflreal 208
                     s++v af+++l+++l
      CTQ29703.1 280 SALVDAFVAHLQQSL 294
                     ***********9976 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.9   1.7e-22   3.1e-19       1      59 [.       6      64 ..       6      65 .. 0.97
   2 ?   -2.9   0.0       3.9     7e+03      28      57 ..     121     150 ..     120     151 .. 0.60

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 1.7e-22
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                lr++++f+av+ +g++t+AA+ L++sqp+vsr ++r E+ lg +LfeRt ++l++T +G
  CTQ29703.1  6 LRHIEIFHAVMTTGNLTEAARMLHTSQPTVSRELARFEKVLGLQLFERTRGRLQPTVQG 64
                79**********************************************8899****998 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.9
                 HHHHHHHHHHHHHHTS-SEEESSSEEEE-H CS
       HTH_1  28 pavsrqikrLEeelgvpLfeRtgrglrLTe 57 
                 p vs qi   E+ l ++++  + + l LTe
  CTQ29703.1 121 PEVSLQIVPQESPLLEEWLSAQRHDLGLTE 150
                 666666666666666666666555677776 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   2.7e-07   0.00049      12      45 ..      18      51 ..      10      61 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.7e-07
                TT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TT CS
      HTH_30 12 ggnisatAkaLhvHrnTlryRLrrieellgldld 45
                 gn++++A+ Lh +  T++  L r e++lgl l 
  CTQ29703.1 18 TGNLTEAARMLHTSQPTVSRELARFEKVLGLQLF 51
                69*****************************975 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.2e-06    0.0021       6      43 ..       7      44 ..       3      50 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.2e-06
      HTH_23  6 eRlrillllaeGlsvreIAreLgvsrrTvyrwlkryre 43
                ++++i +++    + +e+Ar+L+ s+ Tv+r l r+++
  CTQ29703.1  7 RHIEIFHAVMTTGNLTEAARMLHTSQPTVSRELARFEK 44
                5666777777644889********************65 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     5e-06    0.0089      13      48 ..      19      55 ..      10      58 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5e-06
      HTH_28 13 hsvreaArelgisrrtvyrWikryee.gGiagLvprr 48
                ++ +eaAr l++s+ tv+r + r+e+  G++  +  r
  CTQ29703.1 19 GNLTEAARMLHTSQPTVSRELARFEKvLGLQLFERTR 55
                5899*********************977776555555 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.7e-05     0.084      26      47 ..      23      44 ..      20      56 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.7e-05
                HHHHHTTSSHHHHHHHHHHHHH CS
   HTH_Crp_2 26 elAsmlGltretvsrilseLkr 47
                e A+ml +++ tvsr+l+++++
  CTQ29703.1 23 EAARMLHTSQPTVSRELARFEK 44
                679*****************97 PP

>> Phage_NinH  Phage NinH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.7e-05     0.084      13      37 ..      15      39 ..      13      45 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.7e-05
  Phage_NinH 13 vetyGnqtEvARrlkcsRatvRkYv 37
                v t Gn tE+AR l++s  tv + +
  CTQ29703.1 15 VMTTGNLTEAARMLHTSQPTVSREL 39
                6899*****************8865 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1     7e-05      0.13      20      50 ..      11      41 ..       8      43 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7e-05
  HTH_Tnp_ISL3 20 ilelllesrsvkavArqlgvSwtTVwrildr 50
                  i++++  + + +++Ar+l++S  TV r l r
    CTQ29703.1 11 IFHAVMTTGNLTEAARMLHTSQPTVSRELAR 41
                  7788888889****************97766 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0001      0.18      24      47 ..      21      44 ..       4      45 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
                HHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 24 vgelarrlglsksavsrilkrLva 47
                 +e ar l+ s+++vsr l+r+++
  CTQ29703.1 21 LTEAARMLHTSQPTVSRELARFEK 44
                5799*****************986 PP

>> DUF2089  Protein of unknown function (DUF2089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00021      0.38      41      84 ..       8      53 ..       2      96 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
     DUF2089 41 fvelf..ikarGnlkevekelgisYpTvrnrldeileaLgyeeeee 84
                 +e+f  + + Gnl e ++ l  s pTv   l +  + Lg++  e+
  CTQ29703.1  8 HIEIFhaVMTTGNLTEAARMLHTSQPTVSRELARFEKVLGLQLFER 53
                56666446789**********************9999999886544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2460.11
//
Query:       CTQ29704.1  [L=237]
Description: putative racemase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-57  193.1   0.0    6.7e-57  192.9   0.0    1.0  1  Asp_Glu_race     Asp/Glu/Hydantoin racemase
     0.0076   15.7   0.3      0.012   15.0   0.1    1.4  2  Pantoate_transf  Ketopantoate hydroxymethyltransferase
  ------ inclusion threshold ------
      0.067   12.6   0.2        1.3    8.4   0.0    2.7  3  Peripla_BP_1     Periplasmic binding proteins and sugar bindi
       0.17   11.5   0.0       0.23   11.1   0.0    1.2  1  Asp_Glu_race_2   Putative aspartate racemase


Domain annotation for each model (and alignments):
>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.9   0.0   1.5e-60   6.7e-57       1     223 [.       7     224 ..       7     225 .. 0.98

  Alignments for each domain:
  == domain 1  score: 192.9 bits;  conditional E-value: 1.5e-60
                   EEECSCCCCHHHHHHHHHHBTTSSGGGS..EEEEE-CCS-TCHHHHHCH.T..THHHHHHHHHHHHCTTESEEEE--CHHHHHHHHHHHH-SSEEEE CS
  Asp_Glu_race   1 IGgmgpeatlsvlrklveatpaesdqehlplivlndsaipdrteaieeesgddpvlklleaakkLekagadaiviaCnTahavadelqkkikiPvlg 97 
                   +Ggm++e+t+ ++r ++e ++a+ +  h++ +vl++ ++ d+ + ++++++d++ + l+eaa  L++aga+ iv++ nT+h vad++++ +++P+l+
    CTQ29704.1   7 LGGMSWESTIPYYRLINEGVKARLGGLHSASLVLHSVDFHDIEACQSAGDWDRAGEILAEAAVGLQQAGAEGIVLCTNTMHKVADAIAARCQVPFLH 103
                   7***************************************************9999***************************************** PP

                   CHHHHHHHHHHHSS-EEEEEE-HHHHHCTHHHHHHHHHGT.EEE....T-CCCHHCCHCHHHHTT-TTSHHHHHHHHHHHHHHTTT-SEEEE-STTH CS
  Asp_Glu_race  98 iveataealkatgvkkvglLgTrgtlksglyqkeleanqgievvvpseelqssvnqaiyeelkaGevteearrailkllerlaergadaviLGCTel 194
                   i++at +a++a+g ++v+lLgTr+t+++ +y+ +l++++ ie+++p+++++ ++nq+i +el+ G++ e++r+  l+ +++lae+ga++vi GCTe+
    CTQ29704.1 104 IADATGRAIAAKGQRRVALLGTRYTMEQTFYRGRLQEQFAIETLIPEADDRAQINQIIFDELCLGTFSEASRDYYLQTIAALAEQGAEGVIFGCTEI 200
                   ************************************************************************************************* PP

                   HHHHHHHHHCC-TT.SEEEEHHHHHHHHH CS
  Asp_Glu_race 195 plllekaealekeksvpvidptdilaret 223
                    ll +++  l    ++pv+d+++i+a+ +
    CTQ29704.1 201 GLLVPAE--LS---PLPVFDTAAIHAEDA 224
                   *****99..33...588*********976 PP

>> Pantoate_transf  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.7e-06     0.012     151     203 ..      52     105 ..      38     146 .. 0.78
   2 ?   -3.7   0.0       1.3     6e+03     160     182 ..     175     197 ..     160     200 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.7e-06
  Pantoate_transf 151 kvqgkteeeaeklledakaleeaGafalvl.EavpaelakeiteklsiptIGIG 203
                      +  g  +++ e l e a  l++aGa  +vl   + +++a++i++++++p + I+
       CTQ29704.1  52 QSAGDWDRAGEILAEAAVGLQQAGAEGIVLcTNTMHKVADAIAARCQVPFLHIA 105
                      556666777788899999********9998467999*************98885 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.3
  Pantoate_transf 160 aeklledakaleeaGafalvlEa 182
                       +  l++  al+e Ga  +++ +
       CTQ29704.1 175 RDYYLQTIAALAEQGAEGVIFGC 197
                      44455666677777777766655 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00028       1.3      46      88 ..      64     107 ..      56     129 .. 0.74
   2 ?    0.6   0.0      0.07   3.2e+02      45      63 ..     178     196 ..     162     213 .. 0.81
   3 ?   -1.0   0.0      0.21   9.3e+02     157     180 ..     211     234 ..     186     236 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00028
                   H.HHHHHHHHTT-SEEEEE-S-GG..HHHHHHHHHHT-EEEEESS- CS
  Peripla_BP_1  46 a.kaidllkakgidgliiatsdts..fdditakaesgipvialeda 88 
                   + +a+  l++ g++g++++t + +   d+i a  +  +p++ + da
    CTQ29704.1  64 LaEAAVGLQQAGAEGIVLCTNTMHkvADAIAARCQ--VPFLHIADA 107
                   447777899**********9998854555554443..466666655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.07
                   HHHHHHHHHHTT-SEEEEE CS
  Peripla_BP_1  45 lakaidllkakgidgliia 63 
                    ++ i  l+++g++g+i +
    CTQ29704.1 178 YLQTIAALAEQGAEGVIFG 196
                   3489999**********97 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.21
                   EE-SSSSHHHHHHHHHHHHTT-TT CS
  Peripla_BP_1 157 valgsndiedaaealnelleshPe 180
                   ++  +     a++a+n +l+ +P+
    CTQ29704.1 211 LPVFDTAAIHAEDAVNFMLSAGPT 234
                   555555666789999999999998 PP

>> Asp_Glu_race_2  Putative aspartate racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.2e-05      0.23       1      64 [.      48     111 ..      48     140 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.2e-05
  Asp_Glu_race_2   1 vehlkekedWaklgalyvnvrsgcedledlqklslsiaeillkdskedkvsvPfcefaeavikn 64 
                     +e ++  +dW + g++  ++  g ++ +    + ++ ++  + d  + + +vPf + a+a  + 
      CTQ29704.1  48 IEACQSAGDWDRAGEILAEAAVGLQQAGAEGIVLCTNTMHKVADAIAARCQVPFLHIADATGRA 111
                     6899*********************9998666666667778889999************96554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1854.70
//
Query:       CTQ29705.1  [L=108]
Description: Pectin degradation protein KdgF [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-14   54.0   0.2    1.3e-14   53.6   0.2    1.2  1  Cupin_2       Cupin domain
      7e-06   26.0   0.0    9.5e-06   25.6   0.0    1.1  1  AraC_binding  AraC-like ligand binding domain
    0.00013   21.8   0.0    0.00017   21.4   0.0    1.2  1  Cupin_7       ChrR Cupin-like domain
    0.00014   21.5   0.0    0.00017   21.2   0.0    1.3  1  Cupin_3       Protein of unknown function (DUF861)
     0.0029   17.3   0.0     0.0035   17.0   0.0    1.1  1  DMSP_lyase    Dimethlysulfonioproprionate lyase
     0.0043   16.7   0.1     0.0054   16.3   0.1    1.2  1  Cupin_1       Cupin
  ------ inclusion threshold ------
      0.084   12.9   0.1      0.092   12.7   0.1    1.3  1  Pirin         Pirin


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.2   5.2e-18   1.3e-14       3      59 ..      33      88 ..      31      98 .. 0.91

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 5.2e-18
                EEEETTEEEEEECSSSEEEEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE CS
     Cupin_2  3 velppGesapshrHpgedeffyVleGegeltvdgeeveleaGdsvyfpagtpHrfrN 59
                v ++ G+++p+h+Hp+e ++ yVl+Ge+e+t+++e+ +++aGd++y  +g  H+ ++
  CTQ29705.1 33 VNFAAGAVGPMHNHPHE-QLTYVLSGEFEFTIGEETRVVSAGDTLYKRPGIMHGCVC 88
                78999************.***********************************9876 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.7e-09   9.5e-06      17      60 ..      42      85 ..      28      88 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.7e-09
                  EEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EE CS
  AraC_binding 17 pphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHd 60
                  p h h++ ++ yv++G+  ++++++t  +++Gd +  +pg +H 
    CTQ29705.1 42 PMHNHPHEQLTYVLSGEFEFTIGEETRVVSAGDTLYKRPGIMHG 85
                  66*****************************************7 PP

>> Cupin_7  ChrR Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.6e-08   0.00017       7      76 ..      14      84 ..      10      95 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 6.6e-08
                STTEEEEEEEEESSSS-EEEEEEEE-TTEE---EE-TT-EEEEEEEEEEE....ETTEEEETTEEEEE-TT-EE CS
     Cupin_7  7 aegvevkpLerdgeekaratslvryapgsafsahkHpggeeilVLeGvfs....deegdypaGsylrnppgssh 76
                 +gv++++L +dg+    +   v++a+g++ + h+Hp    ++VL+G+f+    +e+++  aG+ l + pg  h
  CTQ29705.1 14 GNGVTRRILAHDGKM---MAVEVNFAAGAVGPMHNHPHEQLTYVLSGEFEftigEETRVVSAGDTLYKRPGIMH 84
                5799******99976...555589*************************8333334445555555555555555 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.8e-08   0.00017      25      60 ..      48      82 ..      25      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.8e-08
                SEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTE CS
     Cupin_3 25 edEfcyileGevkvtpeggetvelraGDlvvlpkgl 60
                 +++ y+l+Ge ++t  g+et+ ++aGD ++ ++g 
  CTQ29705.1 48 HEQLTYVLSGEFEFTI-GEETRVVSAGDTLYKRPGI 82
                36677***********.**************99996 PP

>> DMSP_lyase  Dimethlysulfonioproprionate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.4e-06    0.0035     109     156 ..      42      88 ..      34      95 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.4e-06
  DMSP_lyase 109 PdHhhaaeelYlvlsggaefrqgeaewlsrgiGevifnepgikhamrs 156
                 P H+h++e l +vlsg  ef  ge+   ++ +G+++++ pgi h   +
  CTQ29705.1  42 PMHNHPHEQLTYVLSGEFEFTIGEET-RVVSAGDTLYKRPGIMHGCVC 88 
                 99******************999986.999**************7665 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.1e-06    0.0054      32      97 ..      27      84 ..      17      93 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.1e-06
                TEEEEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EE CS
     Cupin_1 32 gisaarvdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvh 97
                ++ a+ v++++g++ ++h h   ++++yvl Ge    f++ +     +++++++Gd+++  +g++h
  CTQ29705.1 27 KMMAVEVNFAAGAVGPMHNH-PHEQLTYVLSGEFE--FTIGE-----ETRVVSAGDTLYKRPGIMH 84
                577888999***********.889*********99..55544.....4788999999888777777 PP

>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   3.6e-05     0.092      39      79 ..      40      75 ..       5      98 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.6e-05
                ET-EEEEEEEBSEEEEEEEECSEEEEEETTS-EE.EEETT-E CS
       Pirin 39 igagfpphphrgletvtylleGevehrDslGnkg.virpGdv 79
                +   +++hph+    +ty+l+Ge+e+    G+++ v+++Gd 
  CTQ29705.1 40 V-GPMHNHPHE---QLTYVLSGEFEFT--IGEETrVVSAGDT 75
                4.567888885...58********995..5554415566664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 856.14
//
Query:       CTQ29706.1  [L=296]
Description: putative ABC transporter permease protein YesP [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-16   60.9  24.5    1.3e-16   60.9  24.5    2.4  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   3.3     0.011     2e+02     122     173 ..      27      84 ..       6      97 .. 0.63
   2 !   60.9  24.5     7e-21   1.3e-16      22     172 ..      99     275 ..      81     281 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.011
  BPD_transp_1 122 lggavlleflgswpGlgtllleailgydyseis.......nggvlalviavlllnlvad 173
                   +  +++l+f+  +  ++ ++++ i++y y ++        +g+++a+v+++++l l++ 
    CTQ29706.1  27 FVSSFFLSFTE-YDLMSPPVFNGIENYRYMLTEdslfwksMGVTFAYVFLTIPLKLAFA 84 
                   33333333333.22256677777777777777799999999999999999999987654 PP

  == domain 2  score: 60.9 bits;  conditional E-value: 7e-21
  BPD_transp_1  22 pliivllslPsfv.....laillvlvf.................vilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   +++ + +++Ps++     +a+l+ ++f                 +++ +  +l+l+ ++ll + +++ +++i+ aal+++p++++eaa ++Gas+wq
    CTQ29706.1  99 GFFRTAYYIPSILgssvaIAVLWRALFaidgllnsflavfgidaINWLGEPSLALMSVTLLRVWQFGSAMVIFLAALQNVPQSQYEAAMIDGASKWQ 195
                   456666777777777766555555555666888888888899766666666889999**************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis....nggvlalviavlllnlva 172
                   +f kv++P++ p+i+  +i++ + ++ +++ ++ ++++++  ++ l ++ +yd+++ +    +g++la v+++++ ++++
    CTQ29706.1 196 MFIKVTVPLITPVIFFNFIMQTTQAFQEFTGPYVITGGGPTYYTYLFSLYIYDTAFKYfdmgYGAALAWVLFLVVAVFAS 275
                   **************************************99****************99**76444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2109.42
//
Query:       CTQ29707.1  [L=300]
Description: putative binding-protein-dependent transport systems inner membrane component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.7e-18   64.6  16.3    9.7e-18   64.6  16.3    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
        4.8    7.7  12.5        1.3    9.6   3.4    3.7  4  SNARE_assoc   SNARE associated Golgi protein
        6.3    6.6   7.6        5.8    6.8   0.1    3.3  4  Gemini_mov    Geminivirus putative movement protein


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   4.6      0.15   9.2e+02      13      67 ..      28     114 ..      19     120 .. 0.63
   2 !   64.6  16.3   1.6e-21   9.7e-18      10     184 ..     119     294 ..     108     295 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.15
  BPD_transp_1  13 nkkldkllrpliivllslPsfvlaillvlvf...................................vilsilghlilpviillllsaapy 67 
                   ++++++++++++ +l+  P  +++   +                                      ++l     +++p ++l+++s++++
    CTQ29707.1  28 SRVVRYVVLIFVGLLMLYPLAWMFSASF--KpnheifttlglwpahatwdgfingwktgteyhfghYML-NTFKYVIPKVVLTIISSTIV 114
                   5778888888888888888888555533..133555555556666777777777777777777774333.34445556555555555554 PP

  == domain 2  score: 64.6 bits;  conditional E-value: 1.6e-21
  BPD_transp_1  10 lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPna 106
                    ++  +++k+     i+++ lPs vl+i+ +l+f  ++   ++ lp+ + l++ + ++++++  ++lr +p+d +eaa ++G++ +q++++vv+P +
    CTQ29707.1 119 ARFEIPWKKFWFATLITTMLLPSTVLLIPQYLMFREMGM-LNSYLPLYLPLAFATQGFFVFMLIQFLRGVPRDMEEAAQIDGCNSIQVLWYVVVPIL 214
                   47788899999999***************9999977744.46889**************************************************** PP

  BPD_transp_1 107 lppiitglilafggllggavlleflgswpGlgtllleailgy.dyseis..nggvlalviavlllnlvadilqrlldprvr 184
                   +p ii+ ++++f++++++++ ++++  ++   +++  a+ ++ d++e++  n +++++ i++l+ ++v+++ qr++ + v+
    CTQ29707.1 215 KPAIISVALFQFMWSMNDFIGPLIYV-YSVDKYPIALALKMSiDVTEGApwNEILAMASISILPSIIVFFLAQRYFVQGVT 294
                   **************************.7779999988876543888888***************************99886 PP

>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.4   0.00021       1.3      66     108 ..      95     137 ..      32     147 .. 0.81
   2 ?    1.7   0.1     0.059   3.5e+02      64      84 ..     171     191 ..     157     196 .. 0.88
   3 ?   -0.1   0.2      0.21   1.2e+03      68      84 ..     175     191 ..     174     237 .. 0.69
   4 ?   -0.7   0.0      0.32   1.9e+03      22      36 ..     270     284 ..     255     296 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00021
  SNARE_assoc  66 ygflallllrllpivPrdlvnyvaGltrvsfkrFflatfiGsi 108
                  + f++++   +l i+ +++v+y ++ +++++k+F +at+i + 
   CTQ29707.1  95 NTFKYVIPKVVLTIISSTIVAYGFARFEIPWKKFWFATLITTM 137
                  6678888889999**************************9764 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.059
  SNARE_assoc  64 erygflallllrllpivPrdl 84 
                     gf++ +l+++l +vPrd+
   CTQ29707.1 171 ATQGFFVFMLIQFLRGVPRDM 191
                  568999************986 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.21
  SNARE_assoc  68 flallllrllpivPrdl 84 
                  f++ +l+++l +vPrd+
   CTQ29707.1 175 FFVFMLIQFLRGVPRDM 191
                  55666666666666654 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.32
  SNARE_assoc  22 vtslgallGaslayl 36 
                  ++s+ +l + ++ +l
   CTQ29707.1 270 MASISILPSIIVFFL 284
                  222222222222233 PP

>> Gemini_mov  Geminivirus putative movement protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1   0.00096       5.8      33      56 ..      26      50 ..       3      53 .. 0.84
   2 ?   -3.7   0.1       1.8   1.1e+04      32      44 ..     123     135 ..     122     146 .. 0.71
   3 ?   -0.3   0.1      0.15     9e+02      29      56 ..     202     229 ..     187     241 .. 0.80
   4 ?    2.4   0.1     0.022   1.3e+02      32      59 ..     262     290 ..     254     293 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00096
  Gemini_mov 33 pwsrvgeiailtlvavlvlY.Llyt 56
                + srv+  ++l++v +l+lY L+++
  CTQ29707.1 26 KVSRVVRYVVLIFVGLLMLYpLAWM 50
                569*****************88887 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.8
  Gemini_mov  32 lpwsrvgeiailt 44 
                 +pw+++ +++++t
  CTQ29707.1 123 IPWKKFWFATLIT 135
                 6899888877665 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.15
  Gemini_mov  29 sselpwsrvgeiailtlvavlvlYLlyt 56 
                 s ++ w  v+ i+   +++v  +  ++ 
  CTQ29707.1 202 SIQVLWYVVVPILKPAIISVALFQFMWS 229
                 6678899999999999999998876665 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.022
  Gemini_mov  32 lpwsrv.geiailtlvavlvlYLlytlvl 59 
                  pw+ +  +++i +l +++v++L+  ++ 
  CTQ29707.1 262 APWNEIlAMASISILPSIIVFFLAQRYFV 290
                 6787752678899999*******987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2338.60
//
Query:       CTQ29708.1  [L=375]
Description: sn-glycerol-3-phosphate import ATP-binding protein UgpC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-28  100.0   0.0    2.5e-28   99.3   0.0    1.4  1  ABC_tran         ABC transporter
    1.2e-07   32.5   0.0    4.1e-07   30.7   0.0    2.0  1  OB_MalK          MalK OB fold domain
    7.8e-06   26.0   0.0    2.7e-05   24.2   0.0    2.0  2  TOBE_2           TOBE domain
    0.00014   21.8   0.1       0.13   12.1   0.0    2.2  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    0.00057   20.1   0.0      0.037   14.3   0.0    2.7  2  TOBE             TOBE domain
    0.00066   19.7   0.0    0.00098   19.1   0.0    1.3  1  Rad17            Rad17 P-loop domain
     0.0023   18.4   0.1      0.025   15.1   0.0    2.6  2  CysA_C_terminal  CysA C-terminal regulatory domain
  ------ inclusion threshold ------
      0.014   14.8   0.1      0.049   13.1   0.1    1.8  1  SMC_N            RecF/RecN/SMC N terminal domain
      0.015   15.7   0.1      0.038   14.4   0.1    1.6  1  AAA_16           AAA ATPase domain
      0.061   13.2   0.0       0.13   12.2   0.0    1.5  1  RsgA_GTPase      RsgA GTPase
      0.091   13.0   0.1       0.24   11.6   0.1    1.8  1  AAA_22           AAA domain
       0.12   12.1   0.1        0.2   11.3   0.1    1.5  1  AAA_30           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   1.7e-31   2.5e-28       2     136 ..      21     162 ..      20     163 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 1.7e-31
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 + ++lk+  ge ++ivG++G+ KSt l++lagl++   Ge+++ +k +++  l   ++ i++++q+  l p++tvren             + d+++e+
  CTQ29708.1  21 HGIDLKIADGEFMVIVGPSGCAKSTTLRMLAGLETISGGEVRIGDKIVNN--LAPKSRGIAMVFQNYALYPHMTVRENlafglklsklpkaQIDRQVEE 117
                 6799*************************************999888888..99999*********************************999****** PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 a++ l+l+el d+      ++LSgGq qrva+ ra++kkp+++l+DEp 
  CTQ29708.1 118 AAKILELEELLDRLP----RQLSGGQAQRVAVGRAIVKKPDVFLFDEPL 162
                 *********999998....*****************************7 PP

>> OB_MalK  MalK OB fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   2.7e-10   4.1e-07       1      51 [.     241     293 ..     241     295 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 2.7e-10
     OB_MalK   1 GSPaMNflpatveedg..vlvegggvtlplpeeqklalklyagkevilGiRPE 51 
                 G P MN+ p +++e g  ++++ g+ +lpl+++ + + + +++++v +G+RPE
  CTQ29708.1 241 GAPEMNIRPSQLVEHGgrLHLTLGDQRLPLNDRLQSKVETHKNQQVFFGVRPE 293
                 99***********9999*99999999****999878****************9 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.7   7.1e+03      47      64 ..     194     210 ..     181     212 .. 0.60
   2 !   24.2   0.0   1.8e-08   2.7e-05       2      76 .]     289     365 ..     288     365 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.7
      TOBE_2  47 vrqpnadr.dsalapGdtV 64 
                 v++  +++  +a++ Gd++
  CTQ29708.1 194 VYV--THDqTEAMTMGDRI 210
                 333..33324688888886 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.8e-08
      TOBE_2   2 aiRPEklrlaaagg.an.glsGtVedveylGsstryvvelaggqlvvvrqpnadrdsala..pGdtVelswdpddavvl 76 
                 ++RPE+++l ++++ a+ + +G+ ++ve +G++  +++++a+ +l ++r+p+ d++  +a     +V  ++d  +++++
  CTQ29708.1 289 GVRPEFVSL-SDEPfAEgSCAGEMVRVENMGHEFFVYLRVADYEL-TARVPSDDAKPMIAkgLNRKVYFTFDLNKCHIF 365
                 79*******.5666666699***********************99.999999997446663466788889999999987 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0015       2.2       1      55 [.      32      74 ..      32     104 .. 0.69
   2 !   12.1   0.0   8.6e-05      0.13     228     298 ..     126     199 ..      86     204 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0015
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpe 55
                ++v++Gp g+ KS+ L+ l +l            e  +gg+ r+ ++  ++ +p+
  CTQ29708.1 32 FMVIVGPSGCAKSTTLRMLAGL------------ETISGGEVRIGDKIVNNLAPK 74
                79******************99............444444444444444433333 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8.6e-05
      AAA_21 228 dgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr......ngaQviltTHS 298
                    ++ +r+lS G+ +  a+  a+     k++++l+DEp ++L+ kl ++    +++l++      + a  + +TH+
  CTQ29708.1 126 ELLDRLPRQLSGGQAQRVAVGRAIVK---KPDVFLFDEPLSNLDAKLRASMRIRISDLHKqlkksgKPATTVYVTHD 199
                 55555556666666555455555554...44**************99988887775555556669899999999998 PP

>> TOBE  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.089   1.3e+02      14      63 ..     253     296 ..     251     297 .. 0.85
   2 !   14.3   0.0   2.5e-05     0.037       9      64 .]     309     364 ..     303     364 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.089
        TOBE  14 veplgseveVrvdlggga.tLtArvtrrsaeeLgLapGeeVfalikaakvh 63 
                 ve++g   +++++lg++  +L  r+  +  ++    ++++Vf+ + ++ v 
  CTQ29708.1 253 VEHGG---RLHLTLGDQRlPLNDRLQSKVETH----KNQQVFFGVRPEFVS 296
                 56666...799999999999999999888899....*******99999885 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.5e-05
        TOBE   9 gtVvvveplgseveVrvdlgggatLtArvtrrsaeeLgLa..pGeeVfalikaakvhl 64 
                 g+ v+ve  g e +V++++++ + LtArv+ + a    +a   + +V+++++ +k+h+
  CTQ29708.1 309 GEMVRVENMGHEFFVYLRVADYE-LTARVPSDDAKP-MIAkgLNRKVYFTFDLNKCHI 364
                 77799******************.******999876.344115689999999999986 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   6.6e-07   0.00098      44      73 ..      29      58 ..       8     142 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6.6e-07
       Rad17 44 kkriLLisGPsGCgkstvvkvLskelgikl 73
                  + ++i GPsGC+kst++++L+   +i+ 
  CTQ29708.1 29 DGEFMVIVGPSGCAKSTTLRMLAGLETISG 58
                556799****************98766665 PP

>> CysA_C_terminal  CysA C-terminal regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.2   1.8e+03       6      16 ..      55      65 ..      55      72 .. 0.87
   2 !   15.1   0.0   1.7e-05     0.025       8      39 ..     255     293 ..     253     297 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.2
  CysA_C_terminal  6 rvedGklriGg 16
                     ++++G +riG+
       CTQ29708.1 55 TISGGEVRIGD 65
                     5889*****98 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.7e-05
  CysA_C_terminal   8 edGklri..GglalpvP.....elagadgqevvayVRPh 39 
                      ++G+l++  G+ +lp+      + + + +q+v+ +VRP+
       CTQ29708.1 255 HGGRLHLtlGDQRLPLNdrlqsKVETHKNQQVFFGVRPE 293
                      577644444********977765555599*********9 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.3e-05     0.049       2     187 ..       9     181 ..       8     217 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.3e-05
                 EEEEEEESETTEECEEEEEET.TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE.SSSSSSCEE CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
       SMC_N   2 lkrleienFksyagktvilpf.sksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk.lkiekeevs 98 
                 l+++  ++Fk  +   ++l++ + +f +ivGp G+ Ks  l  +    G ++ +    +  ++++++     + k+  ++++f+n       + +e++ 
  CTQ29708.1   9 LEKVYSNGFKAVH--GIDLKIaDGEFMVIVGPSGCAKSTTLRML---AGLETISGGEVRIGDKIVNN----LAPKSRGIAMVFQNYALYpHMTVRENLA 98 
                 7788889999996..4555541456*************988777...67766655455555566665....4455556666676666662122233333 PP

                 EEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  99 isrrvkrkgeseykingkevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeks 187
                     +k ++  + +i+++  + +++ el e  +  + +LSgG+ + va+    Ai  vk+  ++l+De  ++LD+k ++ +  ++   +
  CTQ29708.1  99 --FGLKLSKLPKAQIDRQVEEAAKILELEELLDRLPRQLSGGQAQRVAVG--RAI--VKKPDVFLFDEPLSNLDAKLRASMRIRISDLH 181
                 ..33344444557799999888888888888888999******9877765..344..45556789999888888876554443333332 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   2.5e-05     0.038      23     136 ..      29     190 ..      21     205 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.5e-05
      AAA_16  23 rpelvllsGesGvGKsslvrellralekd...................ggiflrgkcdql.....esaipysalaqalareellrqlldeaesaeleaw 97 
                 ++e ++++G+sG+ Ks+ +r+l+   + +                   g+  + +++  +     ++++++   ++ l + ++ rq++++a+  ele+ 
  CTQ29708.1  29 DGEFMVIVGPSGCAKSTTLRMLAGLETISggevrigdkivnnlapksrGIAMVFQNYALYphmtvRENLAFGLKLSKLPKAQIDRQVEEAAKILELEEL 127
                 45889*****************95333334466666667777777764222244444444433444446665544444465777888888888888888 PP

      AAA_16  98 rekleeala........................avpelagaeasrllellkrllallsrderp 136
                  ++l+++l+                        + ++l+++++ +++  +++l ++l++ ++p
  CTQ29708.1 128 LDRLPRQLSggqaqrvavgraivkkpdvflfdePLSNLDAKLRASMRIRISDLHKQLKKSGKP 190
                 888888888888888888888888888888888888888888877777777777777776666 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.7e-05      0.13      96     131 ..      26      62 ..       8      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.7e-05
                  HCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  96 llkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  +++d +++v+vG+SG  KSt + +l++ ++++ gev+
   CTQ29708.1  26 KIADgEFMVIVGPSGCAKSTTLRMLAGLETISGGEVR 62 
                  5555599*******************98888888876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00016      0.24       5      28 ..      30      53 ..      27     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00016
      AAA_22  5 agilvvtGesGtGKTtllrrlleq 28
                  ++v++G+sG+ K+t+lr+l+  
  CTQ29708.1 30 GEFMVIVGPSGCAKSTTLRMLAGL 53
                5699****************9866 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00013       0.2      17      50 ..      30      62 ..      23     160 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
      AAA_30 17 gdrvavltGpAGtGKttalkalreaweaaggrvi 50
                g  ++v++Gp G  K+t+l+ l+ + + +gg+v 
  CTQ29708.1 30 G-EFMVIVGPSGCAKSTTLRMLAGLETISGGEVR 62
                4.489******************99999985543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2910.06
//
Query:       CTQ29709.1  [L=428]
Description: putative ABC transporter periplasmic binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-29  101.8  10.2    1.1e-28  101.2  10.2    1.2  1  SBP_bac_1    Bacterial extracellular solute-binding protein
    2.4e-24   86.6   8.2    3.1e-24   86.3   8.2    1.1  1  SBP_bac_8    Bacterial extracellular solute-binding protein
  ------ inclusion threshold ------
      0.055   13.7   0.1        1.8    8.8   0.0    2.9  2  SelB-wing_2  Elongation factor SelB, winged helix


Domain annotation for each model (and alignments):
>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2  10.2   1.8e-32   1.1e-28      13     312 ..      45     331 ..      38     334 .. 0.82

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 1.8e-32
                 HHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHT.TSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE.EE... CS
   SBP_bac_1  13 lvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlaka.glllpldpyvkaylapgvkdaadklsssvlpkilds.kv... 106
                 ++ ++f k++p+i+V+ e++g+++    lt++ia+G+ p Dv+++++ w++ + k+ + + +l+++ ++    +           +++k l+s +v   
  CTQ29709.1  45 AL-EEFHKQNPDINVKAEYTGWDGHLSRLTTQIAGGTEP-DVMQTNWNWLPIFSKNgDGFYDLNTLKDEIDLSQ-----------FDAKELQStTVngk 130
                 44.99********************************66.**************************99998777...........88899998888999 PP

                 ES.EEEE.EEEEEEEETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHS..HHHHHH CS
   SBP_bac_1 107 ly.vPly.aargliYNkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvt..aatylv 201
                 l  +P+  +ar++++N   ++kag++ p+tWdel++a+k +  k +k  +      + + ++++ +++ + ++++  d++g++l+  ++++   ++ ++
  CTQ29709.1 131 LNgIPISvTARVFYFNDEAWKKAGIPFPKTWDELMAAGKTFESKLGKQ-YYPVVLEHQDVLALLNSYMVQKYNQPAIDEKGRKLSYSKAQWadFFGMYK 228
                 889****66***************************************.77777888888888899999*************88888888853333333 PP

                 HHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE...EEEEEEEEBTTCST CS
   SBP_bac_1 202 klyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi...lgayglaipkgskn 297
                 kl+   ++  + + + + +k+++   + + +Ge++ ++++++         +k+ ++ + + +    ++++lP+ +++   +     a+ l i k++kn
  CTQ29709.1 229 KLI-DSHVMPDTRYYASFGKSNMYEMKPWIQGEWGGTYMWNST-------INKYSDNLKPPAKLVLGEYPMLPGATDA---GlffKPAQMLSIGKSTKN 316
                 333.33344455555555555555566666**********998.......3444444444444445566777766555...357688888********* PP

                 HHHHHHHHHHHTSHH CS
   SBP_bac_1 298 peaAkkFldfllspe 312
                 p+aA k+++fll+++
  CTQ29709.1 317 PQAAAKVINFLLNSK 331
                 ************987 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   8.2   5.2e-28   3.1e-24       2     259 ..      45     341 ..      44     365 .. 0.78

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 5.2e-28
                 HHHHHHHH-.TEEEEEEE--SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHH.TTSB--GG...GS.TTHHH-HHHHHTT--TS.----EEEEEEE CS
   SBP_bac_8   2 lakefekkt.gvkvnvvtaasndleqklkaalaagtapdidvvwanedalatlae.eglladls...dl.dnlddltdalaavgydgklygvPyasetp 94 
                 + +ef k++ +++v++++ ++++  + l++++a gt pd++++ +  ++l+ + +  + ++dl+   d+ d ++   + l++ +++gkl g+P+ +   
  CTQ29709.1  45 ALEEFHKQNpDINVKAEYTGWDGHLSRLTTQIAGGTEPDVMQTNW--NWLPIFSKnGDGFYDLNtlkDEiDLSQFDAKELQSTTVNGKLNGIPISVTA- 140
                 679***********************************9876666..5******9677******5553313333345588888************987. PP

                 -EEEEEHHHHHHS...---BHHHHHHHHHHHH...HH-SE.....GG---GGGGGGTHH.ETTEE---H.......HHH.HHHHHHHHHHHHTT-EE.. CS
   SBP_bac_8  95 yvliynkdlleka..edpktwdellaaakklk...gkfgl.....pdpasgwlqaalla.kdgksldddg.....gkdglkealellkklkdngkty.. 175
                  v++ n+++++ka    pktwdel aa k+++   gk  +     +++    l  ++++ +++   d++g     +k+++++++ ++kkl d  +++  
  CTQ29709.1 141 RVFYFNDEAWKKAgiPFPKTWDELMAAGKTFEsklGKQYYpvvleHQDVLALLNSYMVQkYNQPAIDEKGrklsySKAQWADFFGMYKKLIDSHVMPdt 239
                 9****************************9963456666666656688888777777775355555666688888999*************99985544 PP

                 ......-S..--SS.TTTTTSBSEEEE-TTHHHHHH-T.TT..SEEEE.--......S--EEEEEEE.EEEBTTS-HHHHHHHHHHHHHT.TSHHHHHH CS
   SBP_bac_8 176 ......dtgadavs.efanGevaftingswdiaaaqka.gk..klgai.vp......kqgsfaggkg.lavpknaknedlaAldFlkwlt.spenqaal 255
                       ++++ ++   + +Ge   t+ +++ i+++ ++ ++  kl  + +p        g+f   +  l + k++kn++ aA++ +++l+ s+e+   l
  CTQ29709.1 240 ryyasfGKSNMYEMkPWIQGEWGGTYMWNSTINKYSDNlKPpaKLVLGeYPmlpgatDAGLFFKPAQmLSIGKSTKNPQ-AAAKVINFLLnSKEGVDIL 337
                 445766444444334888******************9966645666668777777643477777765388*********.6********8466666555 PP

                 HHHH CS
   SBP_bac_8 256 aekt 259
                     
  CTQ29709.1 338 GLER 341
                 4444 PP

>> SelB-wing_2  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0003       1.8       1      13 [.      43      55 ..      43      56 .. 0.93
   2 ?    1.6   0.0     0.055   3.3e+02      34      55 ..     345     366 ..     288     367 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0003
                 HHHHHHHHHH-TT CS
  SelB-wing_2  1 lavLaeYHrenPl 13
                 l++L+e+H++nP+
   CTQ29709.1 43 LKALEEFHKQNPD 55
                 689*********8 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.055
                  CHHHHHHHHHHTTSEEE-SSEE CS
  SelB-wing_2  34 lfqallealvargilavegdwv 55 
                  l  a + +l ++g ++++++ v
   CTQ29709.1 345 LSKAAVTYLTEDGVIKADDPAV 366
                  5567778888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3493.29
//
Query:       CTQ29710.1  [L=447]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.6e-191  634.0  10.1   7.7e-191  633.8  10.1    1.0  1  Porin_8       Porin-like glycoporin RafY
    7.8e-10   38.6   0.6    1.8e-09   37.4   0.6    1.6  1  Sugarporin_N  Maltoporin periplasmic N-terminal extension
  ------ inclusion threshold ------
      0.017   14.6   0.0      0.025   14.1   0.0    1.1  1  WASH_WAHD     WAHD domain of WASH complex
      0.068   12.9   0.2       0.13   12.1   0.2    1.4  1  DivIC         Septum formation initiator
       0.16   11.4   1.5       0.23   10.8   1.5    1.1  1  Tropomyosin   Tropomyosin


Domain annotation for each model (and alignments):
>> Porin_8  Porin-like glycoporin RafY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  633.8  10.1  2.1e-194  7.7e-191       1     364 []      83     447 .]      83     447 .] 0.99

  Alignments for each domain:
  == domain 1  score: 633.8 bits;  conditional E-value: 2.1e-194
     Porin_8   1 lyGdvefnvdaasrkeqltslktsaekevkagdkdkwdinGrillgldGereldngnfagfkvqPladldGkmnlddaafyfGkkedwkikvGrfeayd 99 
                 +yGdvefn+d+asr+++lts+ktsa+k++++gdk++wdinGrillg+dG+r+ ++g++agf+vqPlad+dGkmnldda+f+fG+++dwkik+Grfea+d
  CTQ29710.1  83 FYGDVEFNLDGASRTGSLTSVKTSANKSWAPGDKERWDINGRILLGFDGRRNGADGQYAGFSVQPLADMDGKMNLDDAVFFFGQQDDWKIKIGRFEAWD 181
                 8************************************************************************************************** PP

     Porin_8 100 lfPlnqdtfveysGntandlysdGyGyiymmkegrGrsdsggqvllskelgnwyfevntlledgtslfadkeyhGnalenkknvvyvrPvvaWkndafs 198
                 +fPlnqdtf+eysGntandlysdGyGyiymmkegrGrs+sgg++l+sk+++nwyfevntl+edg+slf d++yhGnalen+knvvyvrPv aW+++a+s
  CTQ29710.1 182 MFPLNQDTFIEYSGNTANDLYSDGYGYIYMMKEGRGRSSSGGNLLFSKTVDNWYFEVNTLVEDGSSLFVDQNYHGNALENRKNVVYVRPVAAWQSGAWS 280
                 *************************************************************************************************** PP

     Porin_8 199 vavavetnvvnnaygykdekgefrdqsdrtGyGltltwnslksdpedglvinlntayldakdeedftvGlnilwkklelgyiyakneidsfnees..ee 295
                 +a+a+e+n+vnnaygy++++g+++dqs+rtGyGlt++wn+lksdp+dg+v+nl+ta+lda+de+df++G+n+lw+++elgyiya+n+id+fn+++  +e
  CTQ29710.1 281 AAAAIESNLVNNAYGYQSQSGRWVDQSNRTGYGLTMSWNTLKSDPQDGAVVNLSTALLDAADETDFSAGINALWHRVELGYIYAHNKIDQFNMAGvtSE 379
                 *********************************************************************************************998899 PP

     Porin_8 296 keddevikepGkydihtvyasyklanvldidnfniylGayaskldakkaeddneedkryGarvrfkyff 364
                 ++ d++i +pG+ydiht+++s++l+n++++ nfniylGayas+ld+++a++ n  d+ryGarvrfkyff
  CTQ29710.1 380 CDGDCAILAPGRYDIHTLHTSWQLPNIMAMPNFNIYLGAYASWLDSTAAKSGNP-DERYGARVRFKYFF 447
                 ************************************************999999.99***********9 PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.6   5.1e-13   1.8e-09      14      54 ..      13      52 ..       3      53 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 5.1e-13
  Sugarporin_N 14 lstaasvaaaasltiEaRLaaLEkrLqeAeqraqaAearak 54
                  l++++++a+a  l++E+RLa++ +rL+++e+ra++Aea++k
    CTQ29710.1 13 LYLPSVMAQA-PLSLEERLAQMDQRLKATEARAASAEAEIK 52
                  3445554554.5**************************987 PP

>> WASH_WAHD  WAHD domain of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   6.9e-06     0.025      40      80 ..      26      66 ..      14      92 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.9e-06
   WASH_WAHD 40 idarvernreklqaineRveiaqakiaklkeskkaikiysp 80
                +++r+++  ++l+a ++R + a+a+i+ lk++++a ++  +
  CTQ29710.1 26 LEERLAQMDQRLKATEARAASAEAEIKTLKGQQQAATVARA 66
                6799*******************************999755 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   3.6e-05      0.13      21      62 ..      25      65 ..       7      67 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.6e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXX CS
       DivIC 21 qlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerAR 62
                +l++ +a+  + l++  a+ ++ eae+k L +++   + +AR
  CTQ29710.1 25 SLEERLAQMDQRLKATEARAASAEAEIKTL-KGQQQAATVAR 65
                78999*************************.69999999999 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.5   6.4e-05      0.23     174     203 ..      26      55 ..      20      62 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.4e-05
  Tropomyosin 174 yeeeirtLeekLkeaeeRaeeAErsvqkLe 203
                   ee++ ++ ++Lk++e+Ra  AE ++++L+
   CTQ29710.1  26 LEERLAQMDQRLKATEARAASAEAEIKTLK 55 
                  588888999999999999999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3362.17
//
Query:       CTQ29711.1  [L=478]
Description: Sucrose-6-phosphate hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-105  353.0   0.2   2.3e-105  352.5   0.2    1.2  1  Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal dom
    7.5e-23   81.3   0.0      1e-22   80.8   0.0    1.2  1  Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
    3.8e-07   29.7   0.2    5.3e-05   22.7   0.0    2.3  2  Glyco_hydro_43   Glycosyl hydrolases family 43


Domain annotation for each model (and alignments):
>> Glyco_hydro_32N  Glycosyl hydrolases family 32 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.5   0.2  3.8e-109  2.3e-105       1     305 []      29     330 ..      29     330 .. 0.95

  Alignments for each domain:
  == domain 1  score: 352.5 bits;  conditional E-value: 3.8e-109
                      SB--SSEEEEEEEEEEECTTEEEEEEEEETTSSSS-SBEEEEEEESSSSSBEEEEEEE-SSSGGCTTEEEEEEEEE-TT-EEEEEEEE-T.... CS
  Glyco_hydro_32N   1 HfqppkgwlNDPnglvyykgeYhlFYqynpkgavwgnisWghavSkDlvhWeelpvalapdeefdsngafSGsavvdddklvllYTgnvk.... 90 
                      H++++ gw+NDPnglv ++g+Yh FYq++p++++wg+++Wgha+SkDlvhWe+lpvalap+ ++d++g+fSGsavvd d+l+l+YTg+      
       CTQ29711.1  29 HLAARAGWINDPNGLVWFDGWYHAFYQHHPYSTQWGPMHWGHARSKDLVHWEHLPVALAPEGPEDKDGCFSGSAVVDGDTLALIYTGHKFhgdp 122
                      999*************************************************************************************778999 PP

                      ...CS.EEEEEEEEESSTTSSEEE-TT--SB-.-TTTSTTSEEEEEEEEETTTEEEEEEEECCTTCCEEEEEEESSSSSEEEECCESEECC.TT CS
  Glyco_hydro_32N  91 ...ee.eqvQnlayskdkgreftkyeenpviaekpeentkhfRDPkvawkedgkwvmvvgaqdkkkgkillYkskdlkewelaselleskkekg 180
                          +  qvQ+la+s ++g++f++  +  v+++  +++++hfRDPkv w+e + w+m+vga++ ++g++ lY+s+dl++w+ a+ l+e+++++g
       CTQ29711.1 123 gdeANlYQVQCLATS-RDGIHFER--QGMVVDT--PPGMHHFRDPKV-WREGDSWYMIVGAREGDTGQVRLYRSADLRQWQDAGVLDEAESTMG 210
                      *98556*********.9*******..7888885..5679********.*******************************************9** PP

                      TEEEEEEEEEEECSTT-ECEEEEEEEEC.STT......TTTTEEEEEEEEEETTTTEEEECCCCCEESBSSSS-EEEEEECCTTTCEEEEEEES CS
  Glyco_hydro_32N 181 gmwEcpdlfeldekdeeekvklvlkvspqgle......dntsqdyyfigkfdaekkkftadeeelkelDyGkdfYAsqtfededkrriligWmg 268
                      +mwEcpd+f+l++k+       vl++spqg++      +n  q++y+ig++ + +++f  + +e++e+D+G+dfYA+q+f+++d+rri+igW++
       CTQ29711.1 211 YMWECPDFFTLNGKR-------VLMFSPQGMQaagfsnRNLFQSGYLIGEW-QPGQRFIRH-GEFREMDNGHDFYAPQSFATPDGRRIVIGWLD 295
                      ***************.......***************99************.799***998.******************************** PP

                      -TTTHCCCCC...CTEE-EE--EEEEEES-TSSSEEEEE CS
  Glyco_hydro_32N 269 ewdseeadvp..ekgwagalslpReltlkdsgkkLvqkP 305
                      +w+s    +p  ++gwag+lslpRel+l+  +++L ++P
       CTQ29711.1 296 MWESP---LPeqQDGWAGMLSLPRELSLSA-DDRLQMRP 330
                      ****8...33347***************66.77887766 PP

>> Glyco_hydro_32C  Glycosyl hydrolases family 32 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   1.7e-26     1e-22      21     158 .]     349     476 ..     333     476 .. 0.83

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 1.7e-26
                      E-..SEEE.-SSSEEEEEEEEE-.-GGGTEEEEEEEES..SS--EEEEEETTTTEEEEE-TTSG...GTTT----EEEE---..-EEEEEEEET CS
  Glyco_hydro_32C  21 vknkelgs.lsggqlelelefelssgsagpfglkvlasedleeettiyydpsrsslvvdRtksgetdfkndfasgesapleldgklkLrilvDk 113
                      ++n++++   + +++e++l ++ +++sa++ gl+   +      ++iy d+++++lv++R+ +     + +   ++s+pl++  +l+Lri+ D 
       CTQ29711.1 349 LNNQQTTMvDNCEAMEVNLRWDCARSSAEQYGLRFGDG------LRIYVDAQQQRLVLERHYP-----QYGLCGTRSVPLTAGADLNLRIFFDS 431
                      333333333566999******************98887......99*****************.....245666799*****779********* PP

                      TEEEEEET.TTEEEEEE--..TTTTEEEEEEE..SS-E--EEEEE CS
  Glyco_hydro_32C 114 ssvEvFvndGrtaiTsrvyPtedstgirlfsnggsakvsslkvwe 158
                      ssvEvFvndG+++++sr+yP+++ +++ lf+  gsa+++++ +w+
       CTQ29711.1 432 SSVEVFVNDGEACLSSRIYPQAPRRELALFAWSGSAALTEAGAWQ 476
                      ********************************9999999988885 PP

>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.1    0.0022        13      32      54 ..      64      87 ..      34      99 .. 0.69
   2 !   22.7   0.0   8.8e-09   5.3e-05      11      85 ..     160     233 ..     152     287 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0022
                    E.SEEEEEEESSSSSCEEEEECEE CS
  Glyco_hydro_43 32 f.pglrifhSkdLvnWkqvgrvle 54
                        +   +SkdLv+W+    +l 
      CTQ29711.1 64 GpMHWGHARSKDLVHWEHLPVALA 87
                    245677789********9987775 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 8.8e-09
                     ESEEEEEETTCEEEEEEEBT.EESEEEEEEESSSSSCEEEEECEESTTTCSTTTEECTEEEEEEEETTEEEEEEE..E CS
  Glyco_hydro_43  11 pDpsilrvgedyYlvtstfe.wfpglrifhSkdLvnWkqvgrvlerrsqlsmkgknasWAPeiskhdgkyylyyt..a 85 
                     +Dp + r g+ +Y++++  e +  ++r+++S dL +W+++g vl++ +++ + + ++   P++   +gk  l+++   
      CTQ29711.1 160 RDPKVWREGDSWYMIVGAREgDTGQVRLYRSADLRQWQDAG-VLDEAESTMGYMWEC---PDFFTLNGKRVLMFSpqG 233
                     7**********88887776515699****************.777777776666666...999999999888888442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3552.55
//
Query:       CTQ29712.1  [L=413]
Description: Sucrose permease, major facilitator superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     2e-126  422.1  24.4   2.4e-126  421.8  24.4    1.0  1  LacY_symp   LacY proton/sugar symporter
    3.2e-24   85.5  22.2    2.9e-23   82.4  20.8    2.4  1  MFS_1_like  MFS_1 like family
    7.9e-18   64.5  41.3    1.9e-16   59.9  30.8    2.0  2  MFS_1       Major Facilitator Superfamily
  ------ inclusion threshold ------
        2.7    6.7  26.3       0.83    8.4   3.2    3.5  3  Sugar_tr    Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.8  24.4  5.5e-130  2.4e-126       8     404 ..       9     400 ..       2     407 .. 0.95

  Alignments for each domain:
  == domain 1  score: 421.8 bits;  conditional E-value: 5.5e-130
   LacY_symp   8 nfylfalffffyffimsayfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllvlfapfliyvfepllqlnilvG 106
                 ++ l++   ff+f  +s   +l+++wl++ +gl  ++tGi+++v+s+ ++  q+ +G i+dklGl+k+llw i+ ll+l +p ++ +f+ ll++n+l+G
  CTQ29712.1   9 SYPLLSALLFFFFVTWSSSGSLLSIWLHQEVGLKAGDTGIIYAVLSVSALFAQVCYGFIQDKLGLRKHLLWYITALLILSGPAYL-LFGHLLKINVLLG 106
                 555566666666667*******************************************************************987.69*********** PP

   LacY_symp 107 alvGgvflGlvysagagaieayiekvsraskfeyGkarvfGclGyalcaslaGilfsidpslvfwlasgfalilllllllskpdksssakvadalGank 205
                 ++ Gg+++Gl+++ g g++e+y+e+v+r+s+fe+G+ar++G+lG+a+++++aG+lf+i+p+l+f +as  +l++ +ll + + ++  +a+     G   
  CTQ29712.1 107 SIFGGIYIGLTFNGGIGVLESYTERVARQSQFEFGRARMWGSLGWAVATFFAGLLFNINPQLNFLVASCSGLVFFILLARLRVSSAPHAMQEAVSGG-- 203
                 **********************************************************************************877777765544444.. PP

   LacY_symp 206 eafslrlalelfkdrklwvfvlyvvGvasvydvfdqqfavffkslfespeaGtrvfGyvttagellnalimfiaplivnriGaknalliagvimsvril 304
                  +++l+ al l+  +++w +v++v+G+ ++y v+dqqf+v+f+s f++ ++G +++Gy++++++ l+a  mf+ap++vnriGakn l+ ag++m++r++
  CTQ29712.1 204 -KVTLEDALRLLTLPRFWALVFFVIGT-CIYGVYDQQFPVYFSSQFATLQEGNEMYGYLNSFQVFLEAAGMFCAPWLVNRIGAKNGLIFAGMVMAMRMV 300
                 .455689*******************7.9********************************************************************** PP

   LacY_symp 305 gsafattalevvilkllhalevplllvgvfkyitsafdkrlsatifligfqlskqlaivllstlaGklydkvGfqtaylvlgiivlsltlisvftlsks 403
                 +s ++  +l ++i kllha+e+p+llv++fky + +fdkrls+t++l+gf  ++++ + +ls laG  y+k Gf ++yl++g++v   t is+f l++ 
  CTQ29712.1 301 ASGLVEGPLLISITKLLHAVELPILLVAIFKYNSLNFDKRLSSTLYLVGFACTSSIIASVLSPLAGYSYEKYGFAQSYLIMGLLVFCTTFISIFLLRSG 399
                 ************************************************************************************************876 PP

   LacY_symp 404 k 404
                 k
  CTQ29712.1 400 K 400
                 6 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4  20.8   6.4e-27   2.9e-23       4     352 ..      13     347 ..      10     380 .. 0.79

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 6.4e-27
  MFS_1_like   4 lkilyFfffaalgsllPYltiylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklevsv 101
                 l++l+Ffff + +s    l+i+l+ + glka + gii+++l + +++++   g++ D++g rk ++   + l +++  + l+                 
  CTQ29712.1  13 LSALLFFFFVTWSSSGSLLSIWLHqEVGLKAGDTGIIYAVLSVSALFAQVCYGFIQDKLGLRKHLLWYITALLILSGPAYLLFG--------------- 96 
                 8999*******************8689*************************************88766666655554444333............... PP

  MFS_1_like 102 aqdvdaektfwilfllvvlasfflaailvlldaatlkelgedrkdyGrqrlfGsvGyaifafitGilidhysv.nllpysallyvlaallvisllvvli 199
                  + + ++  + ++f  + ++ +f ++ + +l++ t +  ++ + ++Gr r++Gs+G+a+++f+ G+l++     n+l       ++  +l++ l v+++
  CTQ29712.1  97 -HLLKINVLLGSIFGGIYIGLTF-NGGIGVLESYTERVARQSQFEFGRARMWGSLGWAVATFFAGLLFNINPQlNFLV-ASCSGLVFFILLARLRVSSA 192
                 .3344556666677666666666.6677889****9999******************************986514443.34444555555666666666 PP

  MFS_1_like 200 lnetekesklkvtkslqvllnilknpeviifllvalilgmswgiienF....lflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklli 294
                 ++ ++ + + + + +l++ l++l  p+ ++++++ +i   ++g++++     ++  +  l+  n++ G l  ++v++e    f a +l++++G+ + li
  CTQ29712.1 193 PHAMQEAVSGGKV-TLEDALRLLTLPRFWALVFF-VIGTCIYGVYDQQfpvyFSSQFATLQEGNEMYGYLNSFQVFLEAAGMFCAPWLVNRIGAKNGLI 289
                 7777666666665.36789999999998887665.3555556666655011055555667888************************************ PP

  MFS_1_like 295 iallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqg 352
                 +a +++++r +  +++e + l+ ++ +Lh++ + +l +a+ +y s  + k+l +t+  
  CTQ29712.1 290 FAGMVMAMRMVASGLVEGPLLISITKLLHAVELPILLVAIFKYNSLNFDKRLSSTLYL 347
                 ****************************************************999754 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9  30.8   4.3e-20   1.9e-16       3     289 ..      15     300 ..      13     330 .. 0.80
   2 !    8.4   5.2   0.00021      0.93     235     295 ..     327     397 ..     309     408 .. 0.48

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 4.3e-20
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalg.lllllfa....sslwlllvlrvlq 95 
                  ++f+ + ++s  g++l+++l ++ g+ +   g+++++ ++ a++a++ +G++ d++G r+ +l+   +l++l+  ++llf+    ++   +l++ ++ 
  CTQ29712.1  15 ALLFFFFVTWSSSGSLLSIWLHQEVGLKAGDTGIIYAVLSVSALFAQVCYGFIQDKLGLRKhLLWYITALLILSgPAYLLFGhllkIN---VLLGSIFG 110
                 5689999999999999999***************************************999888888888888867777784333344...9******* PP

       MFS_1  96 Glgagalfpagaaliadwfpk..eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtg 192
                 G+  g+ f +g+ ++  ++ +  ++  + +g + +  slG +++  ++gll  +++ ++ f+++   +l++f+l l+ l+++  +++ ++ +      g
  CTQ29712.1 111 GIYIGLTFNGGIGVLESYTERvaRQSQFEFGRARMWGSLGWAVATFFAGLLF-NINPQLNFLVASCSGLVFFIL-LARLRVSSAPHAMQEAVSG----G 203
                 *********************544666777**********************.9*****************996.3455566666666667777....8 PP

       MFS_1 193 paplvpawkallkdpvlwillialllfffgfsg.lltllplylqevlgls...glllaglllallalvgailallagrlsdrlgrrrrlllalllllla 287
                 +  l +    ll+ p +w   +++++++++++g + + +p+y+ +++      +  + g+l ++  ++ a+++++a +l++r+g+++ l++a+ ++++ 
  CTQ29712.1 204 KVTLED-ALRLLTLPRFW--ALVFFVIGTCIYGvYDQQFPVYFSSQFATLqegN-EMYGYLNSFQVFLEAAGMFCAPWLVNRIGAKNGLIFAGMVMAMR 298
                 888888.66777777785..55555555555555********999999999953.444445555555555559***********999999988888765 PP

       MFS_1 288 al 289
                  +
  CTQ29712.1 299 MV 300
                 55 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00021
       MFS_1 235 qevlgls..........glllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalglalla 295
                 +  ++++          + l+++++   +++++ +l++lag+   ++g  + +l+++ll++ +++++++ll 
  CTQ29712.1 327 VAIFKYNslnfdkrlssT-LYLVGFACTSSIIASVLSPLAGYSYEKYGFaQSYLIMGLLVFCTTFISIFLLR 397
                 444444444444433322.22222333333333333555555555555434444444444444444444444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.5   0.00069       3.1      46     118 ..      44     116 ..      12     161 .. 0.78
   2 ?    8.4   3.2   0.00019      0.83     291     335 ..     259     303 ..     194     335 .. 0.66
   3 ?    3.4   2.1    0.0061        27      44      95 ..     343     394 ..     319     399 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00069
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH..HHHHHH-TTTTSS-TGGGGGHHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvi..gavlqaaakgknsvevlivgRvlvGigvGl 118
                  ++g+i ++++v a++ ++  g++ d++G +k ll  ++ ++i  g +   + +       +++g ++ Gi++Gl
  CTQ29712.1  44 GDTGIIYAVLSVSALFAQVCYGFIQDKLGLRKHLLWYITALLIlsGPAYLLFGH--LLKINVLLGSIFGGIYIGL 116
                 4789******************************98444444401334444444..2345556677888888887 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00019
                 HHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 291 lvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg 335
                 + +   +++ ++  f+a +lv r+G ++ l++ +++ma+ +v  g
  CTQ29712.1 259 YLNSFQVFLEAAGMFCAPWLVNRIGAKNGLIFAGMVMAMRMVASG 303
                 344455555666666666666666666666666666666666555 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.0061
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH- CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaa 95 
                 s++++  +++  +++a + s +ag+  +++G  +s+li+++l++  ++++++
  CTQ29712.1 343 STLYLVGFACTSSIIASVLSPLAGYSYEKYGFAQSYLIMGLLVFCTTFISIF 394
                 6777888888889999999999999999****99999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 2919.01
//
Query:       CTQ29713.1  [L=331]
Description: Sucrose operon repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-47  162.4   0.0    1.9e-47  162.0   0.0    1.0  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    2.8e-21   76.5   0.0    3.5e-20   73.0   0.1    2.1  2  Peripla_BP_3  Periplasmic binding protein-like domain
    1.1e-16   60.3   0.2    1.9e-16   59.6   0.2    1.4  1  LacI          Bacterial regulatory proteins, lacI family
  ------ inclusion threshold ------
      0.027   14.1   0.0        3.8    7.0   0.0    2.5  3  Peripla_BP_4  Periplasmic binding protein domain
       0.13   12.7   1.0          1    9.7   0.1    2.4  2  HTH_31        Helix-turn-helix domain
       0.14   12.0   0.0       0.81    9.6   0.0    2.2  2  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.0   0.0   6.5e-51   1.9e-47       3     272 ..      63     324 ..      61     329 .. 0.95

  Alignments for each domain:
  == domain 1  score: 162.0 bits;  conditional E-value: 6.5e-51
                   EEEEEES-T.TSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHHHHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTTS-E CS
  Peripla_BP_1   3 klglvlpql.dePffldlvkgitkaakehgvdvlllaageeedlakaidllkakgidgliiatsdtsfdditakaes.gipvialedaidapdgvPc 97 
                   ++g++  +  ++Pf+++++  i+++a++hg+++++++ ++++  ++ +dll+++++dg+i +t++ +  ++  +++   +p +++++ +     v c
    CTQ29713.1  63 TIGVLALDTvTTPFSVEITLSIEETARAHGWNSFVVNMFSDDRPEAVVDLLLSHRPDGIIFTTMGLR--QVPLPEKLlTLPCVLANCESLSQ-PVAC 156
                   57777666569********************************************************..999999999*********97666.8*** PP

                   EEE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-...GGGEEEEE-SSSSHHHHHHHHHHHHTT-.TT-SEEE-SSHH CS
  Peripla_BP_1  98 vipddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGl...evkdvhvalgsndiedaaealnellesh.Peidaivainde 190
                   +ipdd q ++ + + L+a+g++rp ++l +p+s+ ++++r+ G + a +eaG     +    + +g+++++d    + ++++++ P +d ++++nd+
    CTQ29713.1 157 YIPDDEQGQYDAVKALLAAGYRRP-LCLHLPASQPATIRRRRGLERACREAGIepdHLSHSYMGQGDEHYHDIPAVVLAHIREGkPGFDSVICGNDR 252
                   ************************.****************************976678888*********************************** PP

                   HHHHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-SEEEE--EEEEE CS
  Peripla_BP_1 191 aalGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkinkerehprvllip 272
                   +a+  ++ l+++G l+i+++v     +vv+yd++  ++ + l+l+pl + qlp+  +Gr ++ +++     +  ++r++ +p
    CTQ29713.1 253 IAFMVYQTLLGQG-LRIPQDV-----AVVGYDNM--VGIGDLFLPPLSTVQLPHYDIGRLSALHIIH--GDNHRETRKVASP 324
                   *************.*******.....********..******************************9..7777777777766 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.14   4.3e+02      12      81 ..      64     124 ..      61     128 .. 0.76
   2 !   73.0   0.1   1.2e-23   3.5e-20       1     151 [.     169     318 ..     169     330 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.14
                   EEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-.EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEES CS
  Peripla_BP_3  12 iafiggegdrgasasderergfrqaleelglp.lnetvvaaddpaaaaaaraalllqalklaalPtAviaa 81 
                   i++++  +  ++++s e++   +++++++g + + + ++ +d+p+a  ++   +         +P+++i +
    CTQ29713.1  64 IGVLA-LDTVTTPFSVEITLSIEETARAHGWNsFVVNMFSDDRPEAVVDLLLSH---------RPDGIIFT 124
                   66666.45556899999999999*******997777778888887766666666.........88888875 PP

  == domain 2  score: 73.0 bits;  conditional E-value: 1.2e-23
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH...HHCC.-S..EEEEESSCCHHHHHHH CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal...klaa.lP..tAviaasDelAlgvlq 91 
                   v+ L+++G+rr  ++    +  ++a  +r+rg+++a++e+g+++++   ++   ++++++++   ++a+   ++++ +P  + vi+ +D++A  v+q
    CTQ29713.1 169 VKALLAAGYRRPLCLH--LPASQPATIRRRRGLERACREAGIEPDHL-SHSYMGQGDEHYHD---IPAVvlaHIREgKPgfDSVICGNDRIAFMVYQ 259
                   56899***********..7777789999***************8876.33333333344443...33444434444899778*************** PP

                   HHCCTT--TTTTEEEEBSS--SCC.CSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S- CS
  Peripla_BP_3  92 alreaglrvPedlsvigfddsela.alssPplTtvrqpleelGraaaellldllegekapp 151
                    l  +glr+P+d++v+g+d+   +  l++Ppl+tv +p  ++Gr  a  +++   ++++++
    CTQ29713.1 260 TLLGQGLRIPQDVAVVGYDNMVGIgDLFLPPLSTVQLPHYDIGRLSALHIIHG--DNHRET 318
                   ********************98889*******************988777665..344333 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.2   6.3e-20   1.9e-16       1      46 []       3      48 ..       3      48 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 6.3e-20
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ++kDVA+lA+VS +TVSr Ln +er + et  rV aa++e nY+P+
  CTQ29713.1  3 SLKDVAKLANVSLMTVSRALNTPERLKPETLARVQAAIAETNYVPD 48
                59******************************************96 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0    0.0072        21       4      62 ..      68     124 ..      64     129 .. 0.86
   2 ?   -3.7   0.0       2.4   7.1e+03     192     206 ..     161     176 ..     151     180 .. 0.48
   3 ?    7.0   0.0    0.0013       3.8     177     219 ..     234     280 ..     186     286 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0072
                   EES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE- CS
  Peripla_BP_4   4 vvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiiva 62 
                   ++ + + pf  +++  +ee a++ g++ +vv  +  ++ +  a+++ +++  +dgii +
    CTQ29713.1  68 ALDTVTTPFSVEITLSIEETARAHGWNSFVV--NMFSDDRPEAVVDLLLSHRPDGIIFT 124
                   455566669999999***************9..9999999999*************976 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.4
                   CCHHH.CHHHHHHHTT CS
  Peripla_BP_4 192 dgmae.galealeaag 206
                   d+ ++  a++al aag
    CTQ29713.1 161 DEQGQyDAVKALLAAG 176
                   3333322444444444 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0013
                   HHHHTT.T.ECEEEESSCCHHHCHHHHHHHTTT..TSTEEEEEES-H CS
  Peripla_BP_4 177 alltan.p.ldgilaandgmaegalealeaagl..agkvvvtgqDat 219
                   a +++  p  d +++ nd +a+ + ++l  +gl    +v+v+g+D++
    CTQ29713.1 234 AHIREGkPgFDSVICGNDRIAFMVYQTLLGQGLriPQDVAVVGYDNM 280
                   555544246999*********************9877788****986 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00035         1      16      50 ..       3      36 ..       2      41 .. 0.92
   2 ?    0.7   0.1      0.24     7e+02       7      32 ..     191     214 ..     187     220 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00035
      HTH_31 16 sqeevAerlgvsestlsrlEqGrrgrpspavleal 50
                s+++vA++++vs  t+sr  +  + r +p++l+++
  CTQ29713.1  3 SLKDVAKLANVSLMTVSRALNTPE-RLKPETLARV 36
                789*******************99.8999999985 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.24
      HTH_31   7 ralReraGLsqeevAerlgvsestls 32 
                 ++ R+r+GL +  + + +g+ +++ls
  CTQ29713.1 191 ATIRRRRGLER--ACREAGIEPDHLS 214
                 56688888764..4566665555555 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00027      0.81      19      40 ..       3      24 ..       2      29 .. 0.89
   2 ?   -2.0   0.0       1.2   3.5e+03      19      29 ..      83      93 ..      81      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00027
      HTH_23 19 svreIAreLgvsrrTvyrwlkr 40
                s +++A++ +vs +Tv+r l++
  CTQ29713.1  3 SLKDVAKLANVSLMTVSRALNT 24
                789***************9976 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.2
      HTH_23 19 svreIAreLgv 29
                s++e Ar++g+
  CTQ29713.1 83 SIEETARAHGW 93
                899****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2551.21
//
Query:       CTQ29714.1  [L=473]
Description: arabinose transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-132  442.1  31.0   2.7e-132  441.9  31.0    1.0  1  Sugar_tr  Sugar (and other) transporter
      1e-39  136.5  57.3    1.7e-37  129.2  32.5    2.0  2  MFS_1     Major Facilitator Superfamily
    3.1e-09   35.8   5.4    3.1e-09   35.8   5.4    1.8  2  TRI12     Fungal trichothecene efflux pump (TRI12)
    6.4e-05   21.7   7.4    6.4e-05   21.7   7.4    3.5  4  MFS_2     MFS/sugar transport protein
  ------ inclusion threshold ------
        1.2    7.3  19.1        7.2    4.8   1.3    3.2  2  OATP      Organic Anion Transporter Polypeptide (OATP) family
        1.2    8.3  34.1        0.2   10.9  12.3    2.5  3  MFS_4     Uncharacterised MFS-type transporter YbfB


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  441.9  31.0  8.9e-136  2.7e-132       2     451 ..      26     460 ..      25     461 .. 0.96

  Alignments for each domain:
  == domain 1  score: 441.9 bits;  conditional E-value: 8.9e-136
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                  + aa++gllfg d+gvi+++l ++    +f+ls++ +   e      ++vs++++Ga+iG+lf g+l+ r+GRk+sl+++avlfv+g++ +a+a    
  CTQ29714.1  26 SIAAAVAGLLFGLDIGVISGALPFIT--DHFTLSSQLQ---E------WVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAVLFVAGSIGSAFAA--- 110
                 6889**********************..6777666653...4......************************************************... PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylv 199
                 svevl+v+Rv++G++vG+as+++P+y+sE+A +++Rg+++s+yql++t+Gi++a+ +++++++++n   wr +lg+ ++pa++l+il++flP+SPr+l 
  CTQ29714.1 111 SVEVLLVARVVLGVAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGN---WRAMLGVLALPAVILIILVVFLPNSPRWLA 206
                 ******************************************************************...****************************** PP

                 HTT-HHHHHHHHHHHHHC.HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHH CS
    Sugar_tr 200 ekgkeeeakevlaklrge.edadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvti 294
                 ekg++ ea+evl+ lr++ e+a +el+e+ +sl+ +q      w  ++ +++vr+++++g++lq++qq+tG+n+imyy+p+if+ +g++++   +++t+
  CTQ29714.1 207 EKGRHIEAEEVLRMLRDTsEKARDELNEIRESLKLKQ----GGWALFKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMAGFTTTeqqMIATL 301
                 **************777769999************94....46******************************************************** PP

                 HHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS.....CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHH CS
    Sugar_tr 295 ivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvaks..kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaia 391
                 +vg + ++atf+a+f+vd++GR++ l +G+++ma+ +++lg++ + + +++  ++ s +++ ++++ ia +a++ +pv+w+l+sE++p+++R+++++++
  CTQ29714.1 302 VVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTasSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCS 400
                 *****************************************544444444455799999999************************************* PP

                 HHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGG CS
    Sugar_tr 392 vavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieel 451
                 +++nw++n++i+ +f ++++aig++++f+++++l+v+fi ++f+ +petk++tle+ie+ 
  CTQ29714.1 401 TTTNWVSNMIIGATFLTLLDAIGAAGTFWLYTALNVAFIGITFWLIPETKNVTLEHIERN 460
                 *********************************************************985 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2  32.5   5.8e-41   1.7e-37       2     322 ..      30     374 ..      29     386 .. 0.79
   2 !   21.4  16.8   3.4e-08    0.0001      30     180 ..     291     452 ..     289     467 .. 0.72

  Alignments for each domain:
  == domain 1  score: 129.2 bits;  conditional E-value: 5.8e-41
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 ++a++l +l++++++ alp ++++++++s + + ++++  +lgaa+++l+ G+ls r+Gr+  l++g++lf++g++  +fa+s+ +llv+rv+ G++ g
  CTQ29714.1  30 AVAGLLFGLDIGVISGALP-FITDHFTLSSQLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAVLFVAGSIGSAFAASVEVLLVARVVLGVAVG 127
                 67899**************.******************************************************55555988888************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 ++  ++  +++++++++ rg++i+++++++ lG++l+ l   +++ s++Wra+  +la+ ++++++   l+++ ++++r+  ++ +             
  CTQ29714.1 128 IASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDTAFSYSGNWRAMLGVLALPAVILII---LVVFLPNSPRWLAEKGRHIeaeevlrmlrd 223
                 ****************************************************************99...777777777777777777677888999999 PP

       MFS_1 189 ............kgtgpaplvp.......awkallkdpvl.....willialllfffgfsglltllplylqevlgls...glllaglllallalvgail 260
                                      +       +w +++ ++ +     + +l+ +   f+g+++++++ p +  +  g++     ++a+l+++l+++++   
  CTQ29714.1 224 tsekardelneiR--------EslklkqgGWALFKINRNVrravfLGMLLQAMQQFTGMNIIMYYAPRI-FKMAGFTtteQQMIATLVVGLTFMFA--- 310
                 9888666655440........2444445644444444433211113577777777999999*******7.*******8664355555555555555... PP

       MFS_1 261 allagrlsdrlgrrrrlllallllllaalglallavt.....ssavllllvlvl..iGfglgfvfpsll 322
                  ++a + +d+ gr+++l +++++++l++l l ++ +              +l    +G+++ ++ + ++
  CTQ29714.1 311 TFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQfdngtA-----SSGLSWlsVGMTMMCIAGYAM 374
                 88899999*******************9999888888555442.....332222013332222222222 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 3.4e-08
       MFS_1  30 spseigllltl.yalgaavaslplGrlsdrfGrrrvlllglllfalglllll...f......a.ss.lwlllvlrvlqGlgagal.fpagaaliadwfp 115
                 + +e+++++tl ++l++++a++++ + +d+ Gr++ l +g+ ++alg+l+l    +      a s+ +wl + + +++ +g++++ +p++ +l +++ p
  CTQ29714.1 291 TTTEQQMIATLvVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGyclMqfdngtAsSGlSWLSVGMTMMCIAGYAMSaAPVVWILCSEIQP 389
                 567777777776999********************************6666645324455432444433555555555555555505555566666666 PP

       MFS_1 116 keergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperk 180
                  + r ++i + ++++ ++ ++  +    l++++g  ++f++ +++ + ++ + ++l+pe  +++ 
  CTQ29714.1 390 LKCRDFGITCSTTTNWVSNMIIGATFLTLLDAIGAAGTFWLYTALNVAFIGITFWLIPE--TKNV 452
                 6******************666666666667*****************96665555554..4444 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   5.4     1e-12   3.1e-09      43     231 ..      21     213 ..       7     222 .. 0.75
   2 ?   -3.1   1.9      0.64   1.9e+03     109     109 ..     325     325 ..     256     437 .. 0.59

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1e-12
       TRI12  43 vasfaafslnvvatyfvlqas..asalpnilqdvgqsen.sslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaam 138
                 +  f +++  v+   f l+    + alp i +    s + +  + +   +g a+  l  g l+ r+gr+  +++  +l + g+i  + a+ ++ ll a 
  CTQ29714.1  21 MNWFVSIAAAVAGLLFGLDIGviSGALPFITDHFTLSSQlQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAVLFVAGSIGSAFAASVEVLLVAR 119
                 55566666667777777665311579999999887654426666777889************************************************* PP

       TRI12 139 tllgvaagpag.asplfvgelmsnktkflgllivsipvvvtsgls.pyl.gqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkkvr 231
                  +lgva g a  ++pl++ e+ s++ +  g +i     +vt g+   +l    ++  g+wr ++ +  + + i ++l+v     p +   +g++++
  CTQ29714.1 120 VVLGVAVGIASyTAPLYLSEMASENVR--GKMISMYQLMVTLGIVlAFLsDTAFSYSGNWRAMLGVLALPAVILIILVVFLPNSPRWLAEKGRHIE 213
                 ********987479********98765..445444444454444314441457899*******999988888777777666555555555565555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.64
       TRI12 109 p 109
                 p
  CTQ29714.1 325 P 325
                 3 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   7.4   2.1e-08   6.4e-05     228     344 ..      28     142 ..      16     146 .. 0.90
   2 ?    1.3   0.4     0.034     1e+02     155     192 ..     162     198 ..     138     232 .. 0.53
   3 ?    0.7  14.1     0.051   1.5e+02     223     338 ..     252     383 ..     216     388 .. 0.63
   4 ?   -2.1   0.6      0.36   1.1e+03     274     309 ..     410     445 ..     392     455 .. 0.48

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.1e-08
       MFS_2 228 illllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagf 326
                 + ++++ll+ l +gv  g+l +  +++  + +  +++   ++++a++g+++  +l  rlg+k + ++ga+l ++++++  ++  +++ ++lv+ v+ g+
  CTQ29714.1  28 AAAVAGLLFGLDIGVISGALPFITDHFTLSSQLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAVLFVAGSIGSAFA--ASVEVLLVARVVLGV 124
                 56778999*************************************************************************9..888888889999999 PP

       MFS_2 327 gvgvaallpwsmladvvD 344
                 +vg+a ++++  l++++ 
  CTQ29714.1 125 AVGIASYTAPLYLSEMAS 142
                 999988888777777665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.034
       MFS_2 155 fllvlilgglkserkgylifaliialLmllgviivvlg 192
                 +l +l  + + s   ++++++ + al +++++i+vv+ 
  CTQ29714.1 162 VLAFLSDT-AFSYSGNWRAMLGVLALPAVILIILVVFL 198
                 11111111.24444455555555555444444444333 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.051
       MFS_2 223 nraf.lillllfllaalalgvlnglllYyltyvlg....ngsaasvfllvvtisallgiplwqpl.akrlgkkntyllgalltivllv.lvlll..... 309
                 nr   ++++l+ ll+a+ ++ + ++ +Yy+  + +    + ++ ++++++v+ +++ ++ +++++ + + g+k +  +g+++++++++ l + l     
  CTQ29714.1 252 NRNVrRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKmagfTTTEQQMIATLVVGLTFMFATFIAVFtVDKAGRKPALKIGFSVMALGTLvLGYCLmqfdn 350
                 55541579999******************9877655004456677777777777776555555442689998866666666665554404444467788 PP

       MFS_2 310 ...qpsnlllflvllviagfgvgv.aallpwsm 338
                    + +  +l + ++++   g+++ aa ++w +
  CTQ29714.1 351 gtaSSGLSWLSVGMTMMCIAGYAMsAAPVVWIL 383
                 877333344444444444444444355666665 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.36
       MFS_2 274 lgiplwqplakrlgkkntyllgalltivllvlvlll 309
                 +  + +  l   +g   t+ l ++l +++  ++++l
  CTQ29714.1 410 IIGATFLTLLDAIGAAGTFWLYTALNVAFIGITFWL 445
                 333333333344444444444444444444444333 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   1.3    0.0024       7.2       7      81 ..      30     104 ..      23     110 .. 0.85
   2 ?    4.1  10.5    0.0039        12     134     382 ..     114     345 ..     105     373 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0024
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP   7 sllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgsl 81 
                  ++gl+ ++  g+++ ++  i  +F l+s+   +++ss  +g+++ +lf +++  r  r   + +ga+l+  gs+
  CTQ29714.1  30 AVAGLLFGLDIGVISGALPFITDHFTLSSQLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAVLFVAGSI 104
                 44556667888999999999***********************************99999999999999988876 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0039
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 134 lfflaqlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllklyvdidseisltpkdprWvgaWWlgflilgvllllaaip 232
                 ++++a ++lG++       +  Y+ + ++++    ++++++ + +lG +l+fl                   ++  ++ g W     +l++ ++++ i+
  CTQ29714.1 114 VLLVARVVLGVAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFLS------------------DTAFSYSGNWRAMLGVLALPAVILIIL 194
                 566666666666666666666666666666666666666666666666666653..................334567899999999999999999999 PP

                 xxxxxxx...xxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 233 lffFPke...lpkkkeerakkkseeesa...ekkeekkkkeksksseeeelkslkdfpkalkrllknpifllvilssvfeillvaGfitFlpkylEtqF 325
                 ++f+P +   l    e+ ++ ++ee  +   +++e+ +++ ++ +++  +lk+    +  + r ++  +fl ++l+++ ++++++ ++ + p+      
  CTQ29714.1 195 VVFLPNSprwLA---EKGRHIEAEEVLRmlrDTSEKARDELNEIRES-LKLKQGGWALFKINRNVRRAVFLGMLLQAMQQFTGMNIIMYYAPRIFKMA- 288
                 999999955532...22222222222222212333333333333333.234444444445667778899999*************9*****9988765. PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 326 slsaseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvsllsllllll 382
                 + +++e ++++ +vv + +++ ++++ + v k   ++   + +++++  + +l+++l
  CTQ29714.1 289 GFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCL 345
                 445555555555555566666666666666666666666666665555555555554 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  12.3   6.7e-05       0.2      16     183 ..      47     212 ..      37     222 .. 0.76
   2 ?    8.6   7.7   0.00033      0.98     208     304 ..     275     377 ..     249     383 .. 0.84
   3 ?   -2.9   0.4         1   3.1e+03     208     227 ..     410     429 ..     405     453 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.7e-05
       MFS_4  16 LPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaar 114
                 LP +     ls     ++ +  +lG  +Gal+     ++   +  l+ag+++ v+  + +a++ s+ ++l++R+++Gva +++   +     + a++  
  CTQ29714.1  47 LPFITDHFTLSSQLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAVLFVAGSIGSAFAASVEVLLVARVVLGVAVGIASYTAPLYLSEMASENV 145
                 7888888899999999***************88666666666677**********************************99998777777778888999 PP

       MFS_4 115 rervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaaea 183
                 r++++++    v lGi+++ l  + +  +  ++ ++ l++ +l av+l+++++ lp++++  a++ ++ 
  CTQ29714.1 146 RGKMISMYQLMVTLGIVLAFLSDT-AFSYSGNWRAM-LGVLALPAVILIILVVFLPNSPRWLAEKGRHI 212
                 99****999999999987644433.33334444433.33334445666666666775665555555554 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00033
       MFS_4 208 iitatFlvaiardg.aggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvll...slls..psplglivssvllGltflaitalv 300
                  i++ + + i +++ +    ++  + l+vGl+ + ++++     ++ g ++al + + + a+g l+   +l+   ++ ++  +s + +G+t++ i  ++
  CTQ29714.1 275 NIIMYYAPRIFKMAgFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVMALGTLVlgyCLMQfdNGTASSGLSWLSVGMTMMCIAGYA 373
                 4778899999999867777778888899*********************************997743445554337889999999************** PP

       MFS_4 301 lqla 304
                 + +a
  CTQ29714.1 374 MSAA 377
                 *876 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1
       MFS_4 208 iitatFlvaiardgaggall 227
                 ii atFl ++ + ga+g ++
  CTQ29714.1 410 IIGATFLTLLDAIGAAGTFW 429
                 44444444444443333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1096  (0.06113); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 3337.21
//
Query:       CTQ29715.1  [L=253]
Description: 2-deoxy-D-gluconate 3-dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-55  188.8   0.1    1.3e-55  188.5   0.1    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    2.1e-54  184.0   0.3    2.6e-54  183.7   0.3    1.1  1  adh_short     short chain dehydrogenase
    0.00036   20.5   0.1    0.00059   19.8   0.1    1.4  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.5   0.1   2.2e-59   1.3e-55       4     233 ..      20     250 ..      16     251 .. 0.96

  Alignments for each domain:
  == domain 1  score: 188.5 bits;  conditional E-value: 2.2e-59
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdra 98 
                    g+G+++A  lae+G+++v  ++ e   +++e++++ lg+++  l +D ++ + + +l e++v++fg++Dilvnnag  ++  +++l +s++++d++
    CTQ29715.1  20 TGLGQGMALGLAEAGCDIVGINIVEPV-ETIERVTA-LGRRFlsLTADLRQIDGIPQLLERAVAEFGHIDILVNNAGLIRR--EDALAFSEKDWDDV 112
                   79************************9.88999887.7888558*************************************..************** PP

                   HHHHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHH CS
  adh_short_C2  99 ldvnlyslfllakaalp.lmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleel 192
                   ++ n++s+f +++aa++  +++g  g+i+n++s+ + ++      y+a+K a+ ++tr lA+e+++++i vNa++pg+++T+ +++++  ++  +e+
    CTQ29715.1 113 MNLNIKSVFFMSQAAAKhFIAQGsgGKIINIASMLSFQGGIRVPSYTASKSAVMGVTRLLANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSSEI 209
                   *****************75555578************************************************************************ PP

                   HHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 193 earaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                    +r+p gr+g p +    ++fLas ++ yi+G t++vDgG+
    CTQ29715.1 210 LDRIPAGRWGLPADLMGPVVFLASSASDYINGYTVAVDGGW 250
                   ****************************************6 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.7   0.3   4.4e-58   2.6e-54       1     194 [.      11     203 ..      11     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 183.7 bits;  conditional E-value: 4.4e-58
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHH CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselsee 99 
                 kv++v G++ G+G+ +a  la++G+++v +++   +  e+++ + ++g+++l +++D+++ + + +l+e+av+++g++d+LvnNAG+ +++++  +se+
  CTQ29715.1  11 KVAVVSGCDTGLGQGMALGLAEAGCDIVGINIV--EPVETIERVTALGRRFLSLTADLRQIDGIPQLLERAVAEFGHIDILVNNAGLIRREDALAFSEK 107
                 89*************************887666..4569999********************************************************* PP

                 HHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTHH CS
   adh_short 100 ewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelreke 194
                 +w++v+++N+++vf +++a++++++ ++s+G+I+n++S+ ++++ + v++Y+AsK av g tr la+e+a+++i+vna+aPG+++T+ +++lr++e
  CTQ29715.1 108 DWDDVMNLNIKSVFFMSQAAAKHFIaQGSGGKIINIASMLSFQGGIRVPSYTASKSAVMGVTRLLANEWAKHNINVNAIAPGYMATNNTQQLRADE 203
                 ***********************998999**************************************************************99987 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   9.8e-08   0.00059       4     137 ..      14     146 ..      12     193 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 9.8e-08
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++ G+  gLG+ +a  lae g   + +   +        ++i++++alg +   + aD+ + d + +lle++ ae++ i   ++ Ag++r +     ++
  CTQ29715.1  14 VVSGCDTGLGQGMALGLAEAGCDIVGINIVE------PVETIERVTALGRRFLSLTADLRQIDGIPQLLERAVAEFGHIDILVNNAGLIRREDALAFSE 106
                 6888889999999999999997754443333......3457999******************************************************* PP

                 HHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEH CS
          KR 103 edleqvlapKvkGawnLhelled.....esldffvlfSSi 137
                 +d++ v++  +k +  + ++ ++      s   ++ ++S+
  CTQ29715.1 107 KDWDDVMNLNIKSVFFMSQAAAKhfiaqGSGGKIINIASM 146
                 ********99999999998887633333334444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2004.87
//
Query:       CTQ29716.1  [L=391]
Description: Oligogalacturonate lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-209  695.4   0.5   1.8e-209  695.2   0.5    1.0  1  Pectate_lyase22  Oligogalacturonate lyase
    1.6e-10   40.7   3.3    0.00048   20.0   0.2    4.1  4  PD40             WD40-like Beta Propeller Repeat


Domain annotation for each model (and alignments):
>> Pectate_lyase22  Oligogalacturonate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  695.2   0.5    2e-213  1.8e-209       1     384 [.       1     384 [.       1     386 [. 1.00

  Alignments for each domain:
  == domain 1  score: 695.2 bits;  conditional E-value: 2e-213
  Pectate_lyase22   1 makgkkislsfetyqdsstgvkvtrltppdvichrnyfyqkcftrdgskllfggafdgprnyylldlntqqavqltegkgdntfggflssddda 94 
                      makg ++ l+++  +d +tg++vtrltpp+v+chrnyfyqkcf +dgs+llf+g+fdg +nyyll++ + +avqlteg gdntfggfls+dd++
       CTQ29716.1   1 MAKGMRVKLNYHVSHDPDTGAEVTRLTPPEVTCHRNYFYQKCFFNDGSHLLFAGEFDGHWNYYLLNIASAEAVQLTEGAGDNTFGGFLSPDDKS 94 
                      9********************************************************************************************* PP

  Pectate_lyase22  95 lfyvknernlmrvdletleetviyqvdeewvgygtwvansdctklvgieikkedwkpltdwkkfaefyftnpccrlirvdlktgeaevilkenq 188
                      l+yvkn+r l+ v+l tl e  +y+v+++wvgygtwvansdc+klvgiei k dw pl dw+ f++f++  p crl+rvdl++ge++vi++e+ 
       CTQ29716.1  95 LYYVKNDRILLEVNLTTLAEREVYRVSDDWVGYGTWVANSDCSKLVGIEIAKSDWTPLNDWQIFHDFFHKGPHCRLLRVDLRSGESQVIHEEKI 188
                      ********************************************************************************************** PP

  Pectate_lyase22 189 wlghpiyrpfddstvafchegphdlvdarmwlinedgsnlrkvkehaegescthevwvpdgsalayvsylkgsterviysadpvtlenreltem 282
                      wlghpiyrpfdd tvafchegphdlvdarmwl+nedgs +rkvk+ha+gescthe+wvpdgsal+yvsylkg+  r iy+ dp++  n+ l++m
       CTQ29716.1 189 WLGHPIYRPFDDHTVAFCHEGPHDLVDARMWLVNEDGSHVRKVKAHAPGESCTHEFWVPDGSALIYVSYLKGQQGRTIYRFDPESGVNEALMTM 282
                      ********************************************************************************************** PP

  Pectate_lyase22 283 pacshlmsnydgtlmvgdgsdapvdvkddsgykiendpflyvlnikkgtqaklakhdtswkvlegdrqvthphpsftpddkqvlftsdvegkpa 376
                      pacshlmsn+dgtl+vgdgs +pvdvkd +gy+i+ndp+lyv+n+ +++++++a+hdtsw  +   rqvthphpsftpdd  +lf+sd +gkpa
       CTQ29716.1 283 PACSHLMSNFDGTLLVGDGSGTPVDVKDTGGYSIDNDPWLYVFNVAEKRYFRVARHDTSWATVANSRQVTHPHPSFTPDDSAILFSSDKDGKPA 376
                      ********************************************************************************************** PP

  Pectate_lyase22 377 lylakvpe 384
                      +y+ak+p+
       CTQ29716.1 377 IYIAKLPA 384
                      ******97 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.25   2.2e+03      16      26 ..      43      53 ..      43      55 .. 0.86
   2 !    8.9   0.0   0.00016       1.5       3      26 ..      74      98 ..      72     101 .. 0.81
   3 !    9.5   0.1   0.00011      0.96      15      32 ..     244     260 ..     244     268 .. 0.79
   4 !   20.0   0.2   5.3e-08   0.00048      14      38 .]     356     379 ..     355     379 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.25
                E-TTSSEEEEE CS
        PD40 16 fSPDGkrlaFs 26
                f +DG+ l F+
  CTQ29716.1 43 FFNDGSHLLFA 53
                789*****997 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00016
                E--SSSS..EEEEEE-TTSSEEEEE CS
        PD40  3 rltntpg.negaPsfSPDGkrlaFs 26
                +lt + g n ++ ++SPD k+l+++
  CTQ29716.1 74 QLTEGAGdNTFGGFLSPDDKSLYYV 98
                56677777778899**********8 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00011
                 EE-TTSSEEEEEEECT.T CS
        PD40  15 sfSPDGkrlaFsSdRgsG 32 
                 ++ PDG+ l+++S+ + G
  CTQ29716.1 244 FWVPDGSALIYVSYLK-G 260
                 79***********988.4 PP

  == domain 4  score: 20.0 bits;  conditional E-value: 5.3e-08
                 EEE-TTSSEEEEEEECT.TCEEEEE CS
        PD40  14 PsfSPDGkrlaFsSdRgsGkpdIyv 38 
                 Psf+PD + + FsSd++ Gkp Iy+
  CTQ29716.1 356 PSFTPDDSAILFSSDKD-GKPAIYI 379
                 9****************.******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       314  (0.0175135); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2808.74
//
Query:       CTQ29717.1  [L=231]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-61  205.5   7.3    9.1e-61  205.3   7.3    1.0  1  KdgM       Oligogalacturonate-specific porin protein (KdgM)
    0.00023   21.0  15.1    0.00098   19.0  12.5    2.2  1  Porin_4    Gram-negative porin
  ------ inclusion threshold ------
      0.019   15.1  16.3        1.3    9.1  16.3    3.1  1  OMP_b-brl  Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> KdgM  Oligogalacturonate-specific porin protein (KdgM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.3   7.3   1.5e-64   9.1e-61       2     222 .]      15     231 .]      14     231 .] 0.95

  Alignments for each domain:
  == domain 1  score: 205.3 bits;  conditional E-value: 1.5e-64
                 XXXXXX-EEEEEEEEE-..-----EEEEEEEEEE-TTSEEEEEEEEEEE---------------EEEEEEEEEE-EESSSSEEEEEEEEEEEESS-EEE CS
        KdgM   2 sanvlAvyvdyRheyad..askaGnkdrlliserfanGvGlaveakvksggadkennkrlnelkangnElevsylfKvtdklaiqPGfvlesgsststy 98 
                 s  + Av++d Rhe+ d  +s++ n dr+ +s+rfanG+G++veak++sgg++    +++++ + ng E ++s  +K t++l + PGf +es+ s s+y
  CTQ29717.1  15 SFAATAVTIDLRHEFIDggKSDKSNADRVSVSHRFANGLGFTVEAKWRSGGDN--GSQPYSDVVGNGHEDTISWRWKATSNLFLTPGFTIESNDSRSIY 111
                 66789**********995568889*****************************..789***************************************** PP

                 --EEEEEEESSSSEEEEEEEEEEEEE-------.------EEEEEEEEEEEETTTEEEEEEEEEEEE----.-------EEEEEEEEEE--SSSEEEEE CS
        KdgM  99 kpYlrgryklteslslavRyRyeykrkssnisddektnddtyrldtyidykildefkltyeleykkaddfk.lsdgkdtnyehnvklaykidkswkPyv 196
                 kp l+++y +++++++a+RyRyey+r+  n ++d+ +     r d+++++ +l ++  +++  y ++ ++  + d+k +  e+nvk+ayk+d++w+Py 
  CTQ29717.1 112 KPHLHAQYSFDNGFYVAARYRYEYTRYPNNAGKDDDKV---NRGDAWAGF-VLGDWRTELNYVYARSSEGVsRNDNKPYSQEYNVKVAYKLDNNWSPYG 206
                 ******************************99876555...488******.88*************999877999************************ PP

                 EEEEEE--------EEEEEEEEEEE- CS
        KdgM 197 EvgnvsvneetdeRqtryRvGvkYsF 222
                 E+gnv vn+ +d Rqtr+RvGv YsF
  CTQ29717.1 207 EIGNVGVNDRSD-RQTRFRVGVAYSF 231
                 *******99886.9**********99 PP

>> Porin_4  Gram-negative porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0  12.5   1.6e-07   0.00098     139     307 ..      37     211 ..      18     217 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.6e-07
     Porin_4 139 srdsnsiiyyspkfg...Gftagasyafgeddntnglagsvagdsddndafglgagya.fggvglavaaaysqgdneadadldawglgasvsl.ggfkl 232
                 ++++++++ +s  f+   Gft+ a +  g d++++ +   v+++ +d+  +  +a+ + f    l+ +++ +++d+ +   +   +l a++s+ +gf +
  CTQ29717.1  37 KSNADRVS-VSHRFAnglGFTVEAKWRSGGDNGSQPYSDVVGNGHEDTISWRWKATSNlF----LTPGFTIESNDSRS---IYKPHLHAQYSFdNGFYV 127
                 44455554.343443334788888886665555555555554444333333333333332....33333333333333...2224689*********99 PP

     Porin_4 233 gasya..daendaaaaaadadlygvgasytv..galtvgaaygnydd.....agandadatsyglgatYnLskrtdlyaeyayt 307
                  a y    +++ ++a+++d++++   a   +  g+++  ++y ++++     ++ n+  ++ y++ + Y+L  +++ y+e++++
  CTQ29717.1 128 AARYRyeYTRYPNNAGKDDDKVNRGDAWAGFvlGDWRTELNYVYARSsegvsRNDNKPYSQEYNVKVAYKLDNNWSPYGEIGNV 211
                 999555588899999988888888777666666*********99999888988899************************9986 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  16.3   0.00022       1.3      35     178 .]      25     231 .]       5     231 .] 0.67

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00022
   OMP_b-brl  35 v.....dgvgsdsgfgfgvgagyefndnvgvegglsysgdkdysgs...........gktdikinlls.vpvnagyafnlsds...vlpyggaGlg... 110
                       dg +sd++++  v++ ++f + +g+  ++ + +++d++++           ++ +++++ +s + ++ g ++  +ds    +p + a+++   
  CTQ29717.1  25 LrhefiDGGKSDKSNADRVSVSHRFANGLGFTVEAKWRSGGDNGSQpysdvvgngheDTISWRWKATSnLFLTPGFTIESNDSrsiYKPHLHAQYSfdn 123
                 133444788888888889999999999999999999988877777778888888877444444444445555555555555544444444444444445 PP

   OMP_b-brl 111 .................ytkvevdvsgng....................................asdsdtdfglglgaGveyaladnwslkaeYrytd 156
                                  +          +                                    + ++++  +  + + v y+l +nws  +e+  + 
  CTQ29717.1 124 gfyvaaryryeytrypnN----------AgkdddkvnrgdawagfvlgdwrtelnyvyarssegvSRNDNKPYSQEYNVKVAYKLDNNWSPYGEIGNVG 212
                 554444433333333320..........122344556666777777777777777777888888889999999999*********************99 PP

   OMP_b-brl 157 lksdadndlknntfqvgvgyrF 178
                 +   +d  ++++ f vgv+y+F
  CTQ29717.1 213 V---NDRSDRQTRFRVGVAYSF 231
                 9...5688*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1751.03
//
Query:       CTQ29718.1  [L=392]
Description: Acetyl-CoA acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.5e-102  342.4   1.3   2.2e-102  341.9   1.3    1.3  1  Thiolase_N     Thiolase, N-terminal domain
    3.2e-51  172.1   0.4    7.7e-51  170.9   0.2    1.8  2  Thiolase_C     Thiolase, C-terminal domain
    3.3e-08   33.4   1.1    9.3e-07   28.7   0.6    2.8  2  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
     0.0013   18.5   0.7      0.023   14.5   0.1    2.9  2  ACP_syn_III    3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.9   1.3  4.9e-106  2.2e-102       1     259 [.       4     261 ..       4     262 .. 0.99

  Alignments for each domain:
  == domain 1  score: 341.9 bits;  conditional E-value: 4.9e-106
                 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHTS-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigkfggslkdlsaeeLlaealkallekagvdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaqsi 99 
                 vviv+a rtpig f+g+l+ +sa+eL++ ++kal+ek+g+dp++vdevi+G+vl+ag gqn+arq a++ g+p++v a+t+n vc+Sglka++la+q+i
  CTQ29718.1   4 VVIVGALRTPIGCFQGALSRHSAVELGSVVVKALVEKTGIDPHSVDEVILGQVLTAGTGQNPARQSAIRGGLPNTVSAITINDVCGSGLKALHLATQAI 102
                 8************************************************************************************************** PP

                 HTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTTBE CS
  Thiolase_N 100 aageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkdeiv 198
                 ++geadvv+agG+E+ms+ap++ + d+r+g++lg++++ d l++dgl+dafn++hmG+taenla++++isRe qd++A++s++ka++a+++g+F+deiv
  CTQ29718.1 103 QCGEADVVIAGGQENMSRAPHVLT-DSRTGAQLGNSQLIDSLVHDGLWDAFNDYHMGVTAENLAREFGISRELQDAWALSSQHKARKAIDSGRFRDEIV 200
                 ***********************7.************************************************************************** PP

                 -EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTTSS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 199 PvkvkgkkgkktvdkdeairsevtaekLaklkpaFkkeGtvtAgnasqisDGaaavllmse 259
                 Pv ++++    tvd+de++r +++ae La+l+p F+  G+vtAgnas+i+DGaaav++mse
  CTQ29718.1 201 PVVTEHNGAARTVDTDEQPRVDASAEGLASLQPTFDRLGSVTAGNASSINDGAAAVMMMSE 261
                 **99986656*************************************************98 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         1   4.5e+03      27      43 ..      33      49 ..      25      54 .. 0.81
   2 !  170.9   0.2   1.7e-54   7.7e-51       2     123 .]     270     391 ..     269     391 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1
                HHHHHHHHHT--GGGES CS
  Thiolase_C 27 aikkvlkkagltvedid 43
                ++k++++k+g++ +++d
  CTQ29718.1 33 VVKALVEKTGIDPHSVD 49
                67888999999998888 PP

  == domain 2  score: 170.9 bits;  conditional E-value: 1.7e-54
                 --SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHC CS
  Thiolase_C   2 kplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkke 100
                  +la+ir++a+vgvdp+ +g++P+ a++++l++ag++++d+dl+E+nEAFaaqa++v + l++d+++vNvnGGaialGHP+GasG+Ri+v+l++e+ k+
  CTQ29718.1 270 PILARIRAFASVGVDPALMGIAPVHATRRCLERAGWRLDDVDLIEANEAFAAQAISVGRVLEWDERRVNVNGGAIALGHPIGASGCRILVSLVHEMIKR 368
                 689************************************************************************************************ PP

                 TTSEEEEEEEETTTEEEEEEEEE CS
  Thiolase_C 101 ggklgvaalCigggqgvalviek 123
                 ++++g+a+lCigggqgval +e+
  CTQ29718.1 369 DARKGLATLCIGGGQGVALAVER 391
                 *******************9985 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.028   1.2e+02      91     128 ..      29      66 ..      19      82 .. 0.80
   2 !   28.7   0.6   2.1e-10   9.3e-07     169     207 ..      82     120 ..      78     137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.028
                    HHHHHHHHHHHHHTS-HHTCTTGGEEEEEEESSTHHHH CS
  ketoacyl-synt  91 llleaawealedagltpeeldgsrvgvfiGvgagdyaa 128
                    l  ++++  +e+ g++p+++d+   g ++ +g g++ a
     CTQ29718.1  29 LGSVVVKALVEKTGIDPHSVDEVILGQVLTAGTGQNPA 66 
                    6678999999***********99999999988886643 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 2.1e-10
                    EEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---S CS
  ketoacyl-synt 169 vtvdtACsSslvavhaavqslrsgeadvalaGGvelllt 207
                    +t+   C S+l+a+h+a q+++ geadv++aGG e +  
     CTQ29718.1  82 ITINDVCGSGLKALHLATQAIQCGEADVVIAGGQENMSR 120
                    777889***************************997654 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   5.2e-06     0.023       3      40 ..      84     121 ..      82     136 .. 0.86
   2 ?    0.8   0.1       0.1   4.6e+02      52      64 ..     249     261 ..     240     271 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.2e-06
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGGC CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetlski 40 
                  +n +C + + al++A+++i+ g+a  v+  g e++s+ 
   CTQ29718.1  84 INDVCGSGLKALHLATQAIQCGEADVVIAGGQENMSRA 121
                  799*********************99999999999996 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.1
                  B-EEEEEEEEEEE CS
  ACP_syn_III  52 fGDGAgAvvleas 64 
                    DGA+Av++  +
   CTQ29718.1 249 INDGAAAVMMMSE 261
                  57*****998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2925.23
//
Query:       CTQ29719.1  [L=289]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-25   87.9   5.3    8.4e-25   87.4   3.4    2.1  2  LysR_substrate  LysR substrate binding domain
    9.6e-20   70.3   0.5    1.8e-19   69.4   0.5    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.068   12.6   0.0       0.23   10.9   0.1    1.9  2  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family
       0.13   12.0   0.4       0.26   11.1   0.4    1.4  1  HTH_38          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.17   7.6e+02     137     163 ..      32      58 ..       8      68 .. 0.74
   2 !   87.4   3.4   1.9e-28   8.4e-25       2     207 ..      89     287 ..      88     289 .] 0.92

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.17
                     SSHHHHHHHHHTTS-BEEEEGGGHHCC CS
  LysR_substrate 137 nsleallalvaaGlGiallprsavrde 163
                     +++++++a  +a lG++l  r + ++ 
      CTQ29719.1  32 STISTAIANLEADLGVTLFDRATRQPT 58 
                     566777777788888888777776665 PP

  == domain 2  score: 87.4 bits;  conditional E-value: 1.9e-28
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS.CCTTEEEEEEE.EEEEEEEEETTSGGGGSS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp.edsglearpLa.eeplvlvaspdhpLarge 94 
                     g+ + rL++  ++tl + +l +ll +f +r+P+ e+e   g+ e+++dll++ ++ ++++  ++  ++++ +++L  +  + ++++p+hpLa++ 
      CTQ29719.1  89 GETEPRLTFVLSDTLHPDVLEDLLVQFDRRFPHTEFECLIGEDEDVIDLLQKSRAQVGLIEARErYPTDIGSTRLPlQTAMGIYVAPGHPLAAQG 183
                     67889************************************************************99********88****************** PP

                     SECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEET CS
  LysR_substrate  95 pvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrk 189
                     +v++++L+ ++ + l+       +l  a   ++ ++ +++++ ++  ll+++a+G G+++lp+ +v+++  +g+lval++p++p    + l+++k
      CTQ29719.1 184 KVAWDELRSWRELRLS------TFLASA---TEPAAGQVWSAPNYLLLLSMAAQGFGWCILPSALVAEFAPQGGLVALDIPGWPRAISVDLLWNK 269
                     *******888888833......333333...344446789******************************************************* PP

                     TCCCHHHHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidflrea 207
                     + ++ +a  +++++l+++
      CTQ29719.1 270 KAPPGAAGSWLRQHLQRR 287
                     ***************986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.5     4e-23   1.8e-19       2      60 .]       6      64 ..       5      64 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 4e-23
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++l +fv+ +++gsf++AA++L+ sq+++s +i++LE+ lgv+Lf+R +r+ +LT++Ge
  CTQ29719.1  6 EALTAFVEAVDSGSFSAAARRLRKSQSTISTAIANLEADLGVTLFDRATRQPTLTPQGE 64
                5799******************************************************7 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1     5e-05      0.23      18      48 ..       9      38 ..       2      41 .. 0.77
   2 ?   -2.8   0.0      0.95   4.3e+03      13      26 ..      77      90 ..      76      93 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5e-05
  HTH_Tnp_ISL3 18 ayilelllesrsvkavArqlgvSwtTVwril 48
                   + +e++ ++ s++a+Ar+l+ S +T+  ++
    CTQ29719.1  9 TAFVEAVDSG-SFSAAARRLRKSQSTISTAI 38
                  5566677777.***************98776 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.95
  HTH_Tnp_ISL3 13 Tlrleayilellle 26
                  ++rl++ ++ l+ e
    CTQ29719.1 77 SERLDELAVSLSGE 90
                  78999999999877 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   5.8e-05      0.26      22      41 ..      19      38 ..      18      40 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.8e-05
      HTH_38 22 slreIArrLgrspsTIsREl 41
                s+++ ArrL +s sTIs  +
  CTQ29719.1 19 SFSAAARRLRKSQSTISTAI 38
                67777************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2215.61
//
Query:       CTQ29720.1  [L=153]
Description: Na(+)-translocating NADH-quinone reductase subunit E [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-44  148.4  13.5    2.4e-23   81.9   1.7    2.0  2  BTP       Chlorhexidine efflux transporter
  ------ inclusion threshold ------
        1.6    8.0   4.8       0.44    9.8   0.3    1.9  2  S_4TM     SMODS-associating 4TM effector domain


Domain annotation for each model (and alignments):
>> BTP  Chlorhexidine efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   1.7   2.7e-27   2.4e-23       1      63 [.       9      71 ..       9      72 .. 0.98
   2 !   72.3   4.4   2.9e-24   2.6e-20       1      64 []      77     140 ..      77     140 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 2.7e-27
         BTP  1 rslkeRvlHallFElglllllvpllawllgvslleagvldiglslfalvwnfvyNllFDrlfa 63
                ++l+eRv+Ha++FE+++ l+l+p +awl++ s++e+g l+i+l+++a+vwn++yN++FDrl++
  CTQ29720.1  9 KTLTERVIHAITFEGLATLILAPTAAWLMQRSVVEMGGLSILLATLAMVWNIIYNAAFDRLWP 71
                6999********************************************************987 PP

  == domain 2  score: 72.3 bits;  conditional E-value: 2.9e-24
         BTP   1 rslkeRvlHallFElglllllvpllawllgvslleagvldiglslfalvwnfvyNllFDrlfar 64 
                 r+lk R+lHal+FE g++++ v ++a++lgvsll+a++l+ig++lf+l++++++N+++D+l++r
  CTQ29720.1  77 RQLKVRALHALGFETGFVIIGVTMVAIVLGVSLLQAFMLEIGFMLFFLPYTMAFNWVWDTLRER 140
                 789*********************************************************9975 PP

>> S_4TM  SMODS-associating 4TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.5     0.049   4.4e+02      53      75 ..      39      68 ..       8      70 .. 0.61
   2 ?    9.8   0.3   4.9e-05      0.44     169     217 ..      92     140 ..      87     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.049
       S_4TM 53 s.......lktylallgllwllldvlvldr 75
                +       l+ +la+l+++w +++   +dr
  CTQ29720.1 39 RsvvemggLSILLATLAMVWNIIYNAAFDR 68
                233334557788888888888888777776 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 4.9e-05
       S_4TM 169 lllfalvlwillvlvvgliknlslsdlllsvivpllpllllalkeyreq 217
                   +++ v+++++vl v+l++ + l+  ++ +++p + ++ +++++ re 
  CTQ29720.1  92 GFVIIGVTMVAIVLGVSLLQAFMLEIGFMLFFLPYTMAFNWVWDTLRER 140
                 5678899999**********************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1267.14
//
Query:       CTQ29721.1  [L=409]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.062   12.9   0.2      0.062   12.9   0.2    2.9  3  Saf_2TM        SAVED-fused 2TM effector domain
        4.4    6.0  45.2        7.1    5.3  45.2    1.3  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> Saf_2TM  SAVED-fused 2TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.4      0.51   4.6e+03      25      37 ..     129     141 ..     123     172 .. 0.62
   2 ?   12.9   0.2   6.9e-06     0.062      28      97 ..     196     267 ..     185     272 .. 0.85
   3 ?   -0.2   0.4     0.073   6.5e+02      43      77 ..     316     350 ..     279     381 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.51
     Saf_2TM  25 lftigvalllail 37 
                 l+ +gv+l+l++ 
  CTQ29721.1 129 LLSLGVVLVLNLI 141
                 5666666666543 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.9e-06
     Saf_2TM  28 igvalllailgtdwalkialkla.ggslevsfssseipeivlaiilvigvllivvGavlli.lryvneakrq 97 
                 i++ +++ +++ + +++  + ++ ++  +++ ++ +++  v+++i+  +vl++v++ +l+i + y+++a++q
  CTQ29721.1 196 ISIPVMVFAFSHTPIISTFAIDQqEKHGDLAMGKCKKIMKVAYTIICASVLFFVFSCLLAIpATYIETARDQ 267
                 68999*******999988888875888899999999999*********************934566666665 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.073
     Saf_2TM  43 lkialklaggslevsfssseipeivlaiilvigvl 77 
                 +k++l l g + + +f+ + ++ +v+a+ ++++++
  CTQ29721.1 316 VKSSLGLLGVRKSRAFNRAMSILLVSAFTFAVCFI 350
                 55555555555555666666555666666666554 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  45.2    0.0008       7.1       9     403 ..      15     408 ..      12     409 .] 0.73

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0008
  AA_permease_2   9 lvigsvigsgifvkn.laasggpalilwvwiavligs.lavllvyaEl.ssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                      +g+++g+g ++ + +++s+g++++++  +++  +  ++  ++   + s+ +    Gi + + + +gkk++ l + ++++a+++v+ ++++++++
     CTQ29721.1  15 ALYGTAVGAGTLFLPiQLGSAGAIVLFITALVAWPLTyWPHKALSQFIlSANIAPGTGITGAVNHYYGKKIGNLITGLYFLAFFVVVLIYAVAITN 110
                    567999********9999999998666666666555423333333333466677799******************************9******** PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfsslstetdtffpngwpgvllglliv 197
                    +l+  ++  +  ++ l  l+  ++++++ li ++g + + k   ++g l++  pli  +++  +++ +++++++ t + +f p++  +v+ +++++
     CTQ29721.1 111 SLAEQVAHRTPMTPGLRALLSLGVVLVLNLIFLMGRQVTIK---VMGFLVF--PLIACFLFLSLYLIRDWHPEHLTSQMQFSPQTLHQVWISIPVM 201
                    **999998888889999999999999999999999988888...5555555..666666666666679****77666666777777779******* PP

  AA_permease_2 198 lwsfdGfesaanvseevkkkdvpkai........figllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavg.gk.vvaiivvilials 283
                    +++f+    ++ ++  +++k   +a+        + +  i++ + l++ ++ l ++p  +i++ ++ g ++   + +v  ++ ++a+  +i+++++
     CTQ29721.1 202 VFAFSHTPIISTFAIDQQEKHGDLAMgkckkimkV-AYTIICASVLFFVFSCLLAIPATYIETARDQGVTILSALSMVPgAPgWLAVTGIIVAVVA 296
                    *****999999999887766666666666665544.4444444444444899999999***88777554566666676515579999999999999 PP

  AA_permease_2 284 llgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrphl 379
                    +  + ++ ++g+ + + ++++        +k+++f++   a+ + ++ + + + ++ +++    n+++ +++++  ++ ++l+i   +  +  p l
     CTQ29721.1 297 MSKSFLGTYFGVIEGASEIVKSSLGLLGVRKSRAFNR---AMSILLVSA-FTFAVCFINP----NAISMIYAISGPLIAMILFIMPTLSTWLIPAL 384
                    999*******************888766666666543...333333333.2223334555....77777777777777777777777777776777 PP

  AA_permease_2 380 krpgkilvaiigalfllfllvalf 403
                    k ++ +  ai+ +++ll + v++f
     CTQ29721.1 385 KPYRSVGNAITLVVGLLCVSVMFF 408
                    777666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1066  (0.0594567); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 2778.64
//
Query:       CTQ29722.1  [L=292]
Description: putative aldo/keto reductase, NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-48  165.7   0.0    7.4e-47  160.0   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.0   4.1e-51   7.4e-47       1     292 [.      19     286 ..      19     288 .. 0.97

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 4.1e-51
                   .EEEE-SSS-ST.....TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE...--SSSTTSSSS-HHHHHHHH CS
  Aldo_ket_red   1 elglGtwqlgsk....eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv...dlrdaeiksglskeniresl 90 
                   +lg+G++ql ++     ++++eea+++l++a+eaGin++Dt+++Yg++   +l+ +al       ++++i+tKv   ++ ++++ + +s++++++++
    CTQ29722.1  19 RLGYGAMQLAGPgvfgPPKDPEEAVRVLQAAVEAGINHIDTSDFYGPHVTNQLIRKALHP---YPDDLCIVTKVsarRDEKGNWLPAMSPAELTQAV 112
                   59*************999******************************************...********************************** PP

                   HHHHHHHT-S-EEEEEE-S--TTS-.....HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT CS
  Aldo_ket_red  91 eeslkrLgtdyvDllllHrpdpslp....sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkg 183
                   e+ l+ Lg++ + ++ l    + +     s+e  l++l el++ G+ir+iG+Sn++++q+  a  +k ++iv+vq+ yn+  ++++  l+++++++ 
    CTQ29722.1 113 EDNLRHLGLEVLEVVNLRSMLSPHGpvegSLEAPLATLLELKERGLIRHIGLSNVTAKQVADA--QKMTPIVCVQNLYNVA-HRADDALVDALAAQH 206
                   ********999999999888777778889999999**************************99..****************.*************** PP

                   -EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG-- CS
  Aldo_ket_red 184 vpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelk 280
                   ++ +++ plg G+                              ++a+el+e+a++   +++q+al+++l++ +++ +ipg+s+  +l +n++a el 
    CTQ29722.1 207 IAWVPFFPLG-GFTP----------------------------LQAQELNEVAASLEATPMQVALAWLLQRAPNILLIPGTSSRTHLAENIAAAELV 274
                   *********9.8887............................89**************************************************** PP

                   --HHHHHHHHHH CS
  Aldo_ket_red 281 lseeevaeldel 292
                   l++e +++ld++
    CTQ29722.1 275 LPAEALRTLDNI 286
                   *********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2286.79
//
Query:       CTQ29723.1  [L=69]
Description: exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      159  (0.00886831); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 565.14
//
Query:       CTQ29724.1  [L=234]
Description: Type 3 fimbriae transcription activator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-05   25.1   0.1    0.00043   20.6   0.2    2.5  2  PilZ      PilZ domain


Domain annotation for each model (and alignments):
>> PilZ  PilZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.022   3.9e+02      43      80 ..      53      89 ..      46     100 .. 0.76
   2 !   20.6   0.2   2.4e-08   0.00043       1      96 [.     105     216 ..     105     226 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.022
                T-SS-TTSEEEEEEECECEEEEEEEEEEEEEECTCTTE CS
        PilZ 43 deelalgdrvelklpldkdqelslpgrVvrvkpeedge 80
                  +++ g+++++ l+ ++++++++ +    +++++  +
  CTQ29724.1 53 HRKIPSGHKIRFLLH-SDSGKIEFNAALTKHDNSGVDK 89
                47889999*******.9999999999999999986555 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 2.4e-08
                 CSSSS-C....EEECEEEEEEETTEE.EEEEEEEEESSEEEEEES........T-SS-TTSEEEEEEECECEEEEEEEEEEEEEECTCTTE.......E CS
        PilZ   1 qrRkekR..levpvsipvtleadege.lkgrliDiSlgGlairlp........deelalgdrvelklpldkdqelslpgrVvrvkpeedge.......r 81 
                 qrR+ +R  l+ +    ++ ++++ge +   ++DiS gG+a+ ++           l ++  + l  + +   +l ++  +v + ++++ e        
  CTQ29724.1 105 QRRRDPRfrLRHEHDFYCRGRHKNGEnYLFDIKDISDGGCALMTKtpnlkflsHNALLKNAVLMLAEYGEITIDLVVKNVIVITLDNANEEsesyyqiS 203
                 8******886666777777777666679999**********9999888888864444444445555554444445555555555555444466667333 PP

                 EEEEEEEECHHHHHH CS
        PilZ  82 lGveFldldeeqrel 96 
                 + ++F +ld++  ++
  CTQ29724.1 204 CQFKFRHLDDQ--RR 216
                 34444555544..34 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1854.51
//
Query:       CTQ29725.1  [L=194]
Description: LuxR family regulatory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-15   56.4   0.3    2.9e-15   55.5   0.3    1.5  1  GerE          Bacterial regulatory proteins, luxR family
  ------ inclusion threshold ------
      0.058   13.4   0.0        0.1   12.6   0.0    1.4  1  DUF2089       Protein of unknown function (DUF2089)
       0.06   12.9   0.0       0.13   11.8   0.0    1.6  1  Sigma70_r4    Sigma-70, region 4
      0.069   12.8   0.0       0.19   11.5   0.0    1.8  1  Sigma70_r4_2  Sigma-70, region 4
       0.15   11.9   0.0       0.39   10.6   0.0    1.7  1  HTH_23        Homeodomain-like domain


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.3   8.2e-19   2.9e-15       2      50 ..     133     181 ..     132     187 .. 0.95

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 8.2e-19
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksr 50 
                 +Ls+RE+++L+ll++ + nk IA+ l+i+ kTV++h+ +im+KL++ + 
  CTQ29725.1 133 QLSPRECQILELLIANNNNKRIAALLGIAHKTVHSHRIHIMQKLGIDNS 181
                 7********************************************9885 PP

>> DUF2089  Protein of unknown function (DUF2089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.9e-05       0.1      33      84 ..     133     183 ..     129     193 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.9e-05
     DUF2089  33 rLskeqlefvelfikarGnlkevekelgisYpTvrnrldeileaLgyeeeee 84 
                 +Ls+ + + +el+i ++   k+++  lgi+  Tv+++  +i+++Lg++++++
  CTQ29725.1 133 QLSPRECQILELLIANNN-NKRIAALLGIAHKTVHSHRIHIMQKLGIDNSRT 183
                 7999999****9999885.59**************************99976 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.6e-05      0.13       4      48 ..     133     176 ..     132     177 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.6e-05
                 HS-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   4 sLpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 +L++re ++lel    + + + I++ lgi   +V+++    ++kL
  CTQ29725.1 133 QLSPRECQILELLIANN-NNKRIAALLGIAHKTVHSHRIHIMQKL 176
                 8***********99777.88*****************99999998 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.2e-05      0.19      10      47 ..     133     169 ..     132     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.2e-05
                   TS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHH CS
  Sigma70_r4_2  10 eLperqreifllryleglsykEIAellgisegtVksrl 47 
                   +L++r+ +i++l  + +   k IA+llgi  +tV s+ 
    CTQ29725.1 133 QLSPRECQILEL-LIANNNNKRIAALLGIAHKTVHSHR 169
                   799999999999.7999999****************96 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00011      0.39       8      35 ..     139     166 ..     137     179 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
      HTH_23   8 lrillllaeGlsvreIAreLgvsrrTvy 35 
                 ++il ll    + ++IA++Lg+ + Tv 
  CTQ29725.1 139 CQILELLIANNNNKRIAALLGIAHKTVH 166
                 58899999999***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1574.69
//
Query:       CTQ29726.1  [L=238]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-28   98.8   0.2    4.7e-28   98.3   0.2    1.1  1  EAL       EAL domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.2   2.6e-32   4.7e-28      12     235 ..      17     223 ..       6     225 .. 0.81

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 2.6e-32
                 -EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEE.EEE--CHHCC-CCHHHHHHHH CS
         EAL  12 elalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadikl.sinlspasladeefleelrel 109
                  +++++Q ++   +g++v++e+l+r+++     ispe+f+++a+      ++ + ++ +   +l+ ++   +++  +   ++s++   d+++l+ lr+ 
  CTQ29726.1  17 AVRYVFQKMF-SPQGTLVAVECLSRFDN---LSISPEDFFRHATA-----AVRERIFLE---QLALIE---KHKAWFlRNHISATINVDDHILNLLRQK 100
                 568899*999.8**************55...479**********9.....333333322...333332...2333333556777777799999999977 PP

                 H.HCCT-GCC-EEEEEEHHHHHHTHHHHH..HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHHHCCCT- CS
         EAL 110 l.kqsgpspsrLvleitesellarlealq.eevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalialakelgi 206
                   k+ + +  ++ +e+te+   + +  ++  ++++  + +  +++lddfg+gy+ ++ ++ +++d++K+d+++  +l + e++++l++al+++ ++++ 
  CTQ29726.1 101 DiKAKIAALTCVHFEVTEN--AE-NLLHNsLAAWQ--SPQDTSLWLDDFGSGYAGINAIRGYHFDYVKIDKDFFWHLMRKESGRQLMDALVTFLSRNHH 194
                 77999*************9..22.22222124444..4799*********************************99999******************** PP

                 EEEE-S--SHHHHHHHHHHT-SEE-STTT CS
         EAL 207 kvvaegVeteeqlealrelgcdlvQGyll 235
                  v++egVe+e++ e+l+ ++   +QG+++
  CTQ29726.1 195 NVIIEGVESEAHKEWLQGMEWFAIQGHYW 223
                 ***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.33
# Mc/sec: 2143.57
//
Query:       CTQ29727.1  [L=211]
Description: putative fimbrial-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00079   19.7   0.0    0.00098   19.4   0.0    1.1  1  Fimbrial  Fimbrial protein


Domain annotation for each model (and alignments):
>> Fimbrial  Fimbrial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.5e-08   0.00098       3     153 ..      37     210 ..      35     211 .] 0.74

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.5e-08
                 EEEEE..E-SSSEEEHHHSS.....EEEEEEEETGGSBST...EBEEEEEEEEEEE.E-TT.............THSEEEEEEE.E-BSSTTTTEB--B CS
    Fimbrial   3 fngtistraatCeitagtpa.....tVdfpkisvqelnng...egsrsapfeiqvq.Cssg...........gqnaigiqvsss.gsaaaqspnlllts 80 
                 f g +  ++ +C++  +  +     +V +  +s++e++++   +  +++pf++ ++ C+ +             +++++  +++ ++   +++++l ++
  CTQ29727.1  37 FAGRV--TDISCSVALNGGQhagsgNVWLAPVSLAEVHDRgagAFMKPQPFTLALSnCQLRhdggaasqdevRRVSVRWVDGFLlTAVGNENAGYLANT 133
                 56666..888898887776677999999999*******999777778999999999*****99888776666555555555555655555556666666 PP

                 SST.TT-SSEEEEEEETTSSB.......E-BSSS-EE--EEECSEE.EEEEEEEEEEES..SBEESSEEEEEEEEEEEE CS
    Fimbrial  81 sgasalatgVGIrlydsngta......lltlnaavsgspvestalsrssitftAslkklpggtptaGrvnAtAtvvvky 153
                   ++  a+++   l+++++++       ++++ + + ++ + +a+s   +t+ + +++ + + +t+G+++  At ++ y
  CTQ29727.1 134 LPDG--AQNIYLALSTNDNNTldksnkIVPADPQQNQVRLQESAVSGGLFTYYVGYVSPTPKSATSGPITSWATWELVY 210
                 6655..6899999999999994444432344444466667777777699*********88899999****999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1894.07
//
Query:       CTQ29728.1  [L=331]
Description: Fimbria adhesin protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-16   59.7   4.5    4.7e-14   52.9   0.8    2.1  2  Fimbrial  Fimbrial protein


Domain annotation for each model (and alignments):
>> Fimbrial  Fimbrial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.2   0.00014       2.4      41     145 ..      61     156 ..      43     160 .. 0.70
   2 !   52.9   0.8   2.6e-18   4.7e-14       8     153 ..     182     330 ..     174     331 .] 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00014
                 EEEEEEEEEEE-TT..THSEEEEEEEE-BSSTTTTEB--BSST.TT-SSEEEEEEETTSSB..E-BSSS-EE--EEECSEE..EEEEEEEEEEES..SB CS
    Fimbrial  41 rsapfeiqvqCssggqnaigiqvsssgsaaaqspnllltssgasalatgVGIrlydsngta.lltlnaavsgspvestalsr.ssitftAslkklpggt 137
                  sap   +++C+sg    ++++ ++ +  a+   n + +++ +     g+G r+++  g++  + + + +s+   ++t +++ ++++ft   +k+++ t
  CTQ29728.1  61 MSAPGGASYRCTSG---TNRFAAKIVSPGATDLGNKIYSTNVP-----GIGMRFSRG-GATvNIVYPDVFSSRVYNTT-NYSlEGSRFTLEIIKTAATT 149
                 56677778889999...45667767766667777888888887.....9*****755.56656777766665555555.56669999999999976333 PP

                 EESSEEEE CS
    Fimbrial 138 ptaGrvnA 145
                   +G+  A
  CTQ29728.1 150 G-SGTLAA 156
                 3.465544 PP

  == domain 2  score: 52.9 bits;  conditional E-value: 2.6e-18
                 ..E-SSSEEEHHHSSEEEEEEEETGGSBST.EBEEEEEEEEEEEE-TT....THSEEEEEEE....E-BSSTTTTEB--BSST.TT-SSEEEEEEETTS CS
    Fimbrial   8 straatCeitagtpatVdfpkisvqelnng.egsrsapfeiqvqCssg..gqnaigiqvsss....gsaaaqspnllltssgasalatgVGIrlydsng 99 
                  ++ ++C++ +g++ +Vd ++i  ++l+   +++  ++f+i++qCs+g  ++  ++i +s+s    +s+ a+   ll+  +++s +a+g+GI++ ++ g
  CTQ29728.1 182 TVVSPSCSVLSGKNMNVDVGSIRRTDLKGVgTTAGGKDFNIDLQCSGGlsETGYANISTSFSgtlaTSTTATMGALLN-EKAGSGMAKGIGIQVLKD-G 278
                 579**********99***************9*****************998888899998885553333333344444.44444559*******766.6 PP

                 SB.E-BSSS-EE--EEECSEE.EEEEEEEEEEES..SBEESSEEEEEEEEEEEE CS
    Fimbrial 100 talltlnaavsgspvestalsrssitftAslkklpggtptaGrvnAtAtvvvky 153
                 ++ l  n++   ++ +++++   +i++ A+ ++++  t+ +G+v+ +  ++++y
  CTQ29728.1 279 SP-LQFNKKYTVGRLNNQETRYITIPLHARFYQYG-PTTSTGEVESHMIFNLTY 330
                 77.7888776555555555444789*********7.45556**********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2562.10
//
Query:       CTQ29729.1  [L=828]
Description: Outer membrane usher protein MrkC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-188  627.7  17.5   2.1e-188  627.7  17.5    1.4  2  Usher     Outer membrane usher protein
    5.2e-37  127.1   0.2      1e-35  122.9   0.0    2.4  2  PapC_N    PapC N-terminal domain
      5e-08   32.6   0.0    1.7e-07   30.9   0.0    2.0  1  PapC_C    PapC C-terminal domain


Domain annotation for each model (and alignments):
>> Usher  Outer membrane usher protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.56   3.3e+03     352     382 ..     126     156 ..     113     185 .. 0.70
   2 !  627.7  17.5  3.5e-192  2.1e-188       1     551 []     198     751 ..     198     751 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.56
                 EEEEEE-SSS-SEEEEEEEEEEEESGGGS-T CS
       Usher 352 slsaskseneneeddllslnlSiPlgrllsr 382
                 s+   ++ ++n  + +l ln+S+P    ++r
  CTQ29729.1 126 SWRNEENVKDNLVQSSLRLNISVPQIYEDQR 156
                 4445555555555999999999996655555 PP

  == domain 2  score: 627.7 bits;  conditional E-value: 3.5e-192
                 EEEEEEEEEETTEEEEEEE..EEEEEE----EEEEEEEEEEEEETTTTEEEEEEEEE--SSSS---EEEEEEEEE-GGGS-CCCCCEEEEEEEEESSSE CS
       Usher   1 ylnlqsGlNlgaWrLrsdsqlswsksegnenkwkssrtylqraipqlkskLtlGesytssdiFdsvsfrGvsLasddnmlPdslrgyaPevrGiArtnA 99 
                 yl +++Gl++++W L++  +l+w++++g+ ++w+s++tylqr+ipql+s +  G+ +t++++Fd++++rGv+L++ddnm+Pd +r+yaPe+rG+A++nA
  CTQ29729.1 198 YLGVNAGLSWDGWLLKHIGNLNWQQQQGK-AHWNSNQTYLQRPIPQLNSIVSGGQIFTNGEFFDTIGLRGVNLSTDDNMFPDGMRSYAPEIRGVAQSNA 295
                 57789***********************6.********************************************************************* PP

                 EEEEECTTEEEEEEEE-SEEEEE-S---TTTTCEEEEEEEETTS-EEEEEEEE---TT---TT-EEEEEEEEEEE-SSTTB---EEEEEEEEEE-GGGE CS
       Usher 100 kVtirqnGyviYqtlVppGpFeiqdlnptsssgdLdVtveEadGsvqeftvpyasvplllreGqvrYklaaGryrsnnsqqekpffiqaevsyGlpngl 198
                  Vt+rq  ++iYqt+VppGpF++qd++p+++++dL+V+v+EadGsv+ f+vpyasv++llr+G++rY+l+aG+++++ + ++kp+++qa++++G++n l
  CTQ29729.1 296 LVTVRQGSNIIYQTTVPPGPFTLQDVYPSGYGSDLEVSVKEADGSVEVFSVPYASVAQLLRPGMTRYALSAGKVDDS-ALRNKPMLYQATWQHGINNLL 393
                 ***************************************************************************99.7******************** PP

                 EEEEEEEEESSEEEEEEEEEEEEETTEEEEEEEEEEEEEETTSEEEEEEEEEEEEEE-B-TTSEEEEEEEEEEE-TT---HHHHSBSSEE-..---EET CS
       Usher 199 tlYgGlllaedYqAlalglgknlgelGalSvdvtqsrskldkqskekGqsyrlsYakslnetgtniqlagyrystkgfvtlsdaldarkke..kdennl 295
                 t Y G+++ +dYqA+++g+g+n+  +GalS+dvt+sr k d + + +Gqsyr+++++++++t+t+i la+yrystkg+++l+dal+a ++e  +++n++
  CTQ29729.1 394 TGYTGVTGFDDYQAFLVGTGMNT-GIGALSFDVTHSRLKSDAH-DDSGQSYRATFNRMFTDTQTSIVLAAYRYSTKGYYNLNDALYAVDQEknSRSNYT 490
                 ***********************.9**************9988.889****************************************999843444455 PP

                 TS-EEEEEEEEEEEEE.SSSEEEEEEEEEEEESSS--EEEEEEEEEEEEETTEEEEEEEEEEE-SSS-SE..EEEEEEEEEEESGGGS-T.EEEEEEEE CS
       Usher 296 tnnkkeklqlnvsqsl.gdygslylsgsrqtYwktsqknknlqlsyntnigrvsvslslsasksenenee..ddllslnlSiPlgrllsr.anasyslt 390
                   ++k+ ++++v+q+l +++g +ylsg+ ++Yw++s+++k++q+syn+++gr+s+s s+++ ++++++++  dd++sln+S+Pl+ +++r an++++++
  CTQ29729.1 491 LWRQKNGMTFTVNQNLpDGWGGFYLSGRISDYWNRSGTEKQYQVSYNNSFGRLSWSASAQRVYTPDSSGHrrDDRISLNFSYPLWFGDNRtANLTSNTS 589
                 55666***********778**********************************************9998888**************999989******* PP

                 EESSSTEEEEEEEEEEES.STTEEEEEEEEEEESTSS-EEEEEEEETSSEEEEEEEEEESSEEEEEEEEEEEEEEETTEEEEES---SSEEEEE-TT-T CS
       Usher 391 rnnsgktssetgvsgtll.ddnlsYsvnaglssdgkeslsanlsyqasygevslsysysrdysqlnlslsGgvvahakGvtlsqelgdtrvlikadgva 488
                 +nns+ +ss++g++g+l  ++nl+Y+v++++++ g++++++n sy+++++++++sys++++y+q +++ sG+++ah+ Gv+ls+e+g+t++li+a+++a
  CTQ29729.1 590 FNNSRFASSQIGINGSLDsENNLNYGVSTTTATGGQHDVALNGSYRTPWTTLNGSYSQGEGYRQSGIGASGTMIAHSGGVVLSPESGSTMALIEAKDAA 688
                 *************************************************************************************************** PP

                 S-BBTTSTT-B--TTSEEEES---TTS-EEEEB-GGGS-TTEEES-SEEEE-B-TT-EEEEE- CS
       Usher 489 gvrvenqtgvktdrrGyavvpyltpYrenrveldtnklpedvelentvaqvvpteGAvvkaeF 551
                 g+++ +++g+++d++Gya++pyl+pYr n ve+d++   +dv +++tvaqvvp+eG+vvk++F
  CTQ29729.1 689 GAMLPGSPGTRVDSNGYAILPYLRPYRINAVEIDPKGSHDDVAFDRTVAQVVPWEGSVVKVAF 751
                 ************************************************************998 PP

>> PapC_N  PapC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.0   1.7e-39     1e-35       1     145 [.      37     180 ..      37     181 .. 0.94
   2 ?    1.6   0.0     0.042   2.5e+02     127     143 ..     381     397 ..     372     399 .. 0.83

  Alignments for each domain:
  == domain 1  score: 122.9 bits;  conditional E-value: 1.7e-39
                 EXXCCCCTTXTTHHHHHHHHHTT-SS-SEEEEEEEEETTEEEEEEEEEEEECCTCCCEEEE-BHHHHHHTTB-GGGSCCGHHTSTTSC--HHHH..STT CS
      PapC_N   1 eFnpdfLegssasnvdlsrFskgnavlpGeYrvdvyvNgkeigrqevefkaekkkkklepcltrelleqlgvkleklpelakaqeeeCvdlsal..ipg 97 
                 +Fn+ f+ g s+++vdlsrFs+ +a+++G+Y++dvy N++++gr+++++ ++ k+++l +c+t+++l q+g+  ekl+++ ++qe+ C +l+++   ++
  CTQ29729.1  37 QFNDGFIVG-SREKVDLSRFST-SAITEGTYSLDVYTNDEWKGRYDLRIARD-KDGRLGVCYTKAMLAQYGIAAEKLNPQLSEQEGYCGSLKSWrnEEN 132
                 7******99.9***********.79***********************9886.****************************************944456 PP

                 -EEEEETTTTEEEEE--GGGBSTTSTTSSXCCGSBSXTTEEEEEEEEE CS
      PapC_N  98 asvkfdlakqrLdlsiPqaalknsargyvspeewdeGinaallnYnan 145
                 ++ ++ ++++rL++s+Pq++ +++ ++yvspe wd+Gi+a+ l + an
  CTQ29729.1 133 VKDNLVQSSLRLNISVPQIYEDQRLKNYVSPEFWDKGITALNLGWMAN 180
                 667788999***********************************9998 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.042
                 XCCGSBSXTTEEEEEEE CS
      PapC_N 127 speewdeGinaallnYn 143
                  ++ w++Gin +l+ Y+
  CTQ29729.1 381 YQATWQHGINNLLTGYT 397
                 5689**********996 PP

>> PapC_C  PapC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   2.9e-11   1.7e-07       2      61 ..     761     816 ..     760     820 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.9e-11
                 EEEEETTTEE--TT-EEEETTSSS-EEB-CCCEEEEECE-SEEEEEEES-SSTTSEEEEE CS
      PapC_C   2 ltltradGkplPfGAevtdeengkvgiVgqgGqvylrglpdqgtLtvkwgegssqqCras 61 
                 l+ ++a+ +plPf A+++  +++++g+Vgqg++++++    + +  vkw +g+   C+++
  CTQ29729.1 761 LQARQANHEPLPFAASIFSPDGKEIGVVGQGSMMFISDANAK-RAIVKWSGGQ---CSVD 816
                 6789****************9999*************98877.667*****99...9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (828 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 5600.95
//
Query:       CTQ29730.1  [L=233]
Description: Chaperone protein MrkB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-42  143.3   0.1    1.5e-41  141.2   0.0    2.0  3  PapD_N    Pili and flagellar-assembly chaperone, PapD N-termi
      1e-15   57.8   0.4    2.5e-15   56.5   0.4    1.7  1  PapD_C    Pili assembly chaperone PapD, C-terminal domain


Domain annotation for each model (and alignments):
>> PapD_N  Pili and flagellar-assembly chaperone, PapD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   0.0   1.7e-45   1.5e-41       2     124 ..      21     145 ..      20     146 .. 0.95
   2 ?   -1.3   0.0      0.21   1.9e+03      17      17 ..     189     189 ..     154     218 .. 0.53
   3 ?   -1.7   0.0      0.29   2.6e+03      13      34 ..     207     228 ..     197     232 .. 0.69

  Alignments for each domain:
  == domain 1  score: 141.2 bits;  conditional E-value: 1.7e-45
                 EEESSSEEEEETTSSEEEEEEEE-SSS-EEEEEEEECTTSSSTCCSSCS.SEEEESSEEEE-TTEEEEEEE.EE.SS---SSS-EEEEEEEEEE----. CS
      PapD_N   2 vviggtrviynadekeasvtvkNtgkepylvqswvddgdeeaedekakaspfvvtPPlfrlepgeeqvlRi.vtagkklpkdrEslfwlnvkeiPpkk. 98 
                 + ++gtr+iy+++eke++v+++N++++p+l+q+w+d+gd++a++++ ++ pf++tPP++r++++++q+lRi + +++ l+kd+E+l+wln++eiPp+  
  CTQ29730.1  21 IIVNGTRFIYPGNEKEITVQLSNNADRPALAQAWLDNGDADATPDTITT-PFIITPPISRVDAKSGQTLRIkLGSSAGLAKDKETLWWLNLLEIPPVVa 118
                 789*******************************************999.*********************8778999******************997 PP

                 .-.TCEEEEEEEEEEEEEEEEEEETTS CS
      PapD_N  99 .kkkekknklqlalrsriklfyrPagl 124
                  +k+e +n+lqla+rsr k++yrPagl
  CTQ29730.1 119 nQKNEGQNVLQLAIRSRFKFIYRPAGL 145
                 555899*******************98 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.21
                 E CS
      PapD_N  17 e 17 
                 +
  CTQ29730.1 189 S 189
                 1 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.29
                 TTSSEEEEEEEE-SSS-EEEEE CS
      PapD_N  13 adekeasvtvkNtgkepylvqs 34 
                 a ++++++tv+N +++ + v +
  CTQ29730.1 207 AVNRGETLTVNNINDYGADVAV 228
                 5567889999999887655555 PP

>> PapD_C  Pili assembly chaperone PapD, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.4   2.8e-19   2.5e-15       1      62 [.     166     226 ..     166     227 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 2.8e-19
                 EEE-SSS-EEEEEEEEEETTEEEEEEEEEE-TTEEEEETT--S--TT-EEEEEEE-TTS-EE CS
      PapD_C   1 VkNptPYyvtfsslevkgggkslaleagmvaPfssatfakkaapaagatvsftvINDyGgiv 62 
                 ++NptP+y+t+s+++ +gg k+l+ +++m+aP ss+t+a ++a  +g t+++  INDyG+ v
  CTQ29730.1 166 INNPTPFYITVSRISRDGG-KALNSKTVMLAPQSSQTVALSSAVNRGETLTVNNINDYGADV 226
                 79************98866.55555789*******************************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1720.57
//
Query:       CTQ29731.1  [L=202]
Description: Fimbrial subunit type 3 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.24   12.0   3.3        3.7    8.2   0.1    2.3  2  GW        GW (Gly-Tryp) dipeptide domain


Domain annotation for each model (and alignments):
>> GW  GW (Gly-Tryp) dipeptide domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00021       3.7       5      47 ..      41      83 ..      37      88 .. 0.87
   2 ?    4.1   0.6    0.0041        73      10      40 ..     160     195 ..     153     200 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00021
                EEEEEEECSTTTCSCEESSSTTSTCCCEEEEGGGGTTSEEEEE CS
          GW  5 vnytatInesgrndgiYskgpaltsaktlgaskkyngktvtVl 47
                v+ t  +n +g  +++Y ++ +lt +k+ +a + ++ k++t++
  CTQ29731.1 41 VSCTVSVNGQGSDANVYLSPVTLTEVKAAAADTYLKPKSFTID 83
                667788998889899***************9999999999987 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0041
                 EECSTTTCSC...EESSSTTSTCCCEEEEG..GGGT CS
          GW  10 tInesgrndg...iYskgpaltsaktlgas..kkyn 40 
                 + ++s  +dg   +Y+ g+a++ ++t+++   ++y 
  CTQ29731.1 160 KGDASAVADGarfTYYVGYATSAPTTVTTGvvNSYA 195
                 55556666777779********99999998887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1615.69
//
Query:       CTQ29732.1  [L=69]
Description: Multiple stress resistance protein BhsA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-08   33.6   1.1    3.5e-08   33.3   1.1    1.1  1  DUF1471   Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   1.1   1.9e-12   3.5e-08       7      54 ..      25      67 ..      22      69 .] 0.94

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.9e-12
                EEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEE CS
     DUF1471  7 isvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAel 54
                +sv+  + +++++e++++  A+e+GA +Y+It+a +  g+++h tAel
  CTQ29732.1 25 VSVT--ADTLDSAEAKIATIAKEQGA-SYHITEAYT--GNQVHMTAEL 67
                8888..*******************9.58*******..********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 532.30
//
Query:       CTQ29733.1  [L=298]
Description: Protein PecM [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-34  117.7  37.2    1.3e-18   67.5  17.8    2.0  2  EamA          EamA-like transporter family
  ------ inclusion threshold ------
       0.06   12.7   4.3      0.083   12.2   4.3    1.2  1  TPT           Triose-phosphate Transporter family
        3.3    6.9  14.0        4.3    6.5   8.5    2.3  2  Peptidase_U4  Sporulation factor SpoIIGA


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4  11.4     6e-19   3.6e-15       5     136 ..      13     138 ..      10     139 .. 0.94
   2 !   67.5  17.8   2.1e-22   1.3e-18       3     135 ..     149     281 ..     147     283 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 6e-19
        EamA   5 llallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePv 103
                 ll  la  +w+++++++ ++l    p+ ++ +r l agi+lli++  + ++       +w+ l+++g+l++ +++ l+f+a  +++ + a++i +++P+
  CTQ29733.1  13 LLTALAPAIWGTTYIVTSQFLPPDRPFIAALLRVLPAGIALLIWSRRFPQRG------EWAKLIVTGILNIGAFQALLFIAAYRLPGGLAAVIGAIQPL 105
                 7889999**********************************88776666555......***************************************** PP

        EamA 104 ftlilsvlllgekltlkqllgivlillGvllil 136
                 ++++l++ + +++  ++ +++++ ++lG +++l
  CTQ29733.1 106 LVMLLAWCVDRQRSPWLAVFSAIAGILGMAMLL 138
                 ******************************987 PP

  == domain 2  score: 67.5 bits;  conditional E-value: 2.1e-22
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsle 101
                 gi  a+l+a+++a+++ ls++   +++ ++lt+++++i+g++l ++al+ + +l + +  + + +l l++ g +la++l+f ++ ++s+  +s +++l+
  CTQ29733.1 149 GIGAAFLGAISMALGTWLSRRWALSLPIVALTGWQLTIGGVVLAPVALIVDPPLHQVTALQAAGYLWLCVAGAMLAYGLWFRGIGRLSPVAVSAMSLLS 247
                 788899*************99999******************************99999999999********************************** PP

        EamA 102 PvftlilsvlllgekltlkqllgivlillGvlli 135
                 Pv +++l++++lg+k++ + l+g++++l++vl i
  CTQ29733.1 248 PVTAVVLGWIFLGQKIQGMALVGLIVVLASVLSI 281
                 ******************************9865 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.3   1.4e-05     0.083      90     287 ..      92     279 ..      40     281 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
         TPT  90 aVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvalasvt.ElsFnligfisAlisnltfslrnifsKkllkklkdldalnlfaiitils 187
                 +   + ++ a++P+   +l+  + +++ + l + s +  + G+a+  +      + +g+ +A +  ++ +l   +s++   +   l  + l     +++
  CTQ29733.1  92 PGGLAAVIGAIQPLLVMLLAWCVDRQRSPWLAVFSAIAGILGMAMLLLSpHTVLDPLGIGAAFLGAISMALGTWLSRRWALS---LPIVALTGWQLTIG 187
                 556688999999999999999999999999999999998999888777624568999*******************999888...56666666666788 PP

         TPT 188 lllllPvallvegvlktpsllkstkvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGv 286
                  ++l Pval+v+  l++++ l+++       l+l ++ ++l +    + +  + r spv+ s  + +  v  +vl  ++++++++ + ++G  v+++ v
  CTQ29733.1 188 GVVLAPVALIVDPPLHQVTALQAA-----GYLWLCVAGAMLAYG---LWFRGIGRLSPVAVSAMSLLSPVTAVVLGWIFLGQKIQGMALVGLIVVLASV 278
                 8999********955555555555.....455555555666554...5688999***************************************999887 PP

         TPT 287 f 287
                 +
  CTQ29733.1 279 L 279
                 5 PP

>> Peptidase_U4  Sporulation factor SpoIIGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.4    0.0064        39      35      94 ..      16      75 ..      12     102 .. 0.68
   2 ?    6.5   8.5   0.00073       4.3      17     131 ..     105     229 ..      95     269 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0064
  Peptidase_U4 35 lllaAllGalyvvlvlflpklesillsillkilvsllmvli.afgpkslkeflkalllfyl 94
                   l+ A+ G+ y+v   flp   +++   ll++l + + +li + ++ +  e++k +++ +l
    CTQ29733.1 16 ALAPAIWGTTYIVTSQFLP-PDRPFIAALLRVLPAGIALLIwSRRFPQRGEWAKLIVTGIL 75
                  5677999***********9.56699999999988888887734333334466666555444 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00073
  Peptidase_U4  17 llLlltakllklkikklrlllaAllGalyvvlvlflpklesillsillkilvsllmvliafgpkslkeflkalllfylvsfllgGilfalsyll... 110
                   ll +l a+++ ++ +++  +++A++G l ++++l+ p      l i + +l ++ m+l +    + + +   ++ +  +  ++gG+++a   l+   
    CTQ29733.1 105 LLVMLLAWCVDRQRSPWLAVFSAIAGILGMAMLLLSPHTVLDPLGIGAAFLGAISMALGT-WLSRRWALSLPIVALTGWQLTIGGVVLAPVALIvdp 200
                   677899***********************9998888843333445555556666665554.444555777778888899*********988855677 PP

  Peptidase_U4 111 .......lkskn....llvlllgalvaylllk 131
                          l   +    l++++ ga++ay l  
    CTQ29733.1 201 plhqvtaL---QaagyLWLCVAGAMLAYGLWF 229
                   76555443...056665566666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.48
# Mc/sec: 1863.79
//
Query:       CTQ29734.1  [L=168]
Description: HTH-type transcriptional regulator PecS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-12   45.5   0.0    9.5e-12   44.7   0.0    1.4  1  MarR           MarR family
      2e-10   40.4   0.2    5.8e-10   38.9   0.0    1.8  2  MarR_2         MarR family
    1.7e-06   28.4   0.0    3.1e-06   27.6   0.0    1.5  1  HTH_27         Winged helix DNA-binding domain
    0.00012   22.2   0.0    0.00021   21.4   0.0    1.4  1  HTH_34         Winged helix DNA-binding domain
    0.00021   21.3   0.3     0.0046   17.0   0.0    2.4  2  HTH_20         Helix-turn-helix domain
     0.0003   20.6   0.0    0.00048   19.9   0.0    1.4  1  HxlR           HxlR-like helix-turn-helix
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.038   13.8   0.0    1.6  1  LexA_DNA_bind  LexA DNA binding domain
      0.041   13.4   0.0       0.07   12.7   0.0    1.5  1  HTH_24         Winged helix-turn-helix DNA-binding
      0.055   13.3   0.6      0.096   12.5   0.6    1.4  1  DUF294_C       Putative nucleotidyltransferase substrate bind


Domain annotation for each model (and alignments):
>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   4.8e-15   9.5e-12       5      58 ..      59     115 ..      57     116 .. 0.94

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 4.8e-15
                 HHHHHHHHHHSTT...EEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTSTTS CS
        MarR   5 qfviLrilyeqgp...lsvseLakklgvskstvtrvldrLekkGlieRskspeDrRe 58 
                 +f+ L++l++ g+   ls ++L + l+++++t+t  l++Lek+G+i+R ++peD R+
  CTQ29734.1  59 EFDMLATLRRAGApfvLSPTQLFSTLMITSGTMTHRLKALEKRGFITRVPNPEDARS 115
                 7999********97777889************************************7 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   2.9e-13   5.8e-10       6      62 .]      58     115 ..      53     115 .. 0.94
   2 ?   -2.1   0.1       1.9   3.7e+03       7      20 ..     139     152 ..     138     165 .. 0.61

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 2.9e-13
                 HHHHHHHHHHCTTTS.EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEESSSSSSS CS
      MarR_2   6 aqarvLaaLgrrpgr.dltvgelarrlglsksavsrilkrLvaaGLverrpgpeDkRa 62 
                  +++ La L+r++ +  l++++l  +l ++ ++++ +lk L+++G+++r+p+peD+R+
  CTQ29734.1  58 WEFDMLATLRRAGAPfVLSPTQLFSTLMITSGTMTHRLKALEKRGFITRVPNPEDARS 115
                 699**********99777***************************************6 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.9
                 HHHHHHHHHCTTTS CS
      MarR_2   7 qarvLaaLgrrpgr 20 
                 ++++La L +++++
  CTQ29734.1 139 ERQLLAGLSDGERQ 152
                 67777777777654 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.6e-09   3.1e-06      22      68 .]      78     124 ..      63     124 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.6e-09
      HTH_27  22 adlcgrlnvedshisyslkkLtekGLvertgdeadrrekrvrlTdkG 68 
                 ++l  +l++++ ++   lk+L+++G+++r + ++d r+++v+lT +G
  CTQ29734.1  78 TQLFSTLMITSGTMTHRLKALEKRGFITRVPNPEDARSMLVALTSAG 124
                 5778899*************************************887 PP

>> HTH_34  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0     1e-07   0.00021      17      74 ..      77     133 ..      61     136 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1e-07
      HTH_34  17 fvelkealeatdgnLsvhlkkLekagYievdkefkgkkprtllriTpeGreafkkyvk 74 
                 +++l ++l +t+g +   lk+Lek g+i++  + ++  +  l+ +T++Gre+ ++ v+
  CTQ29734.1  77 PTQLFSTLMITSGTMTHRLKALEKRGFITRVPNPEDA-RSMLVALTSAGRERIDAAVE 133
                 5788899**********************98888777.999**********9988765 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.3e-06    0.0046      25      58 ..      75     108 ..      60     111 .. 0.84
   2 ?    1.9   0.2      0.12   2.4e+02      30      48 ..     142     161 ..     139     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.3e-06
                 B-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEEC CS
      HTH_20  25 ltaselaerldlskntlsyHLrvLeeagLvevvr 58 
                 l++++l  +l ++  t+ ++L++Le+ g++++v 
  CTQ29734.1  75 LSPTQLFSTLMITSGTMTHRLKALEKRGFITRVP 108
                 57788888889********************985 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.12
                 HHHHH.TS-HHHHHHHHHHH CS
      HTH_20  30 laerl.dlskntlsyHLrvL 48 
                 l + l d+ +++l++ LrvL
  CTQ29734.1 142 LLAGLsDGERQQLDQALRVL 161
                 555666899**********9 PP

>> HxlR  HxlR-like helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.4e-07   0.00048      25      71 ..      81     126 ..      56     141 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.4e-07
                 HHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSS-EEEEEE-TCGGG CS
        HxlR  25 kralpkisqkmLaqrLreLeqdglierevypevPpkveYsltekGrs 71 
                   +l +i+  ++++rL++Le+ g+i r++ pe    +   lt +Gr+
  CTQ29734.1  81 FSTL-MITSGTMTHRLKALEKRGFITRVPNPEDARSMLVALTSAGRE 126
                 4555.79**************************************97 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.9e-05     0.038      38      61 ..      87     109 ..      76     115 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.9e-05
                    -.HHHHHHHHHHHHHTTSEE-GGG CS
  LexA_DNA_bind  38 kSpsaveehLkaLerKGyierdpg 61 
                    + + ++ ++LkaLe++G+i r p+
     CTQ29734.1  87 T-SGTMTHRLKALEKRGFITRVPN 109
                    5.45789**************986 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.5e-05      0.07      29      48 .]      86     105 ..      61     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.5e-05
      HTH_24  29 lSpstvnrrlkrLeeeGlIk 48 
                 ++++t + rlk Le+ G+I+
  CTQ29734.1  86 ITSGTMTHRLKALEKRGFIT 105
                 899***************96 PP

>> DUF294_C  Putative nucleotidyltransferase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.6   4.8e-05     0.096      65     137 ..      92     164 ..      84     167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.8e-05
    DUF294_C  65 leRlkalaeagvlsa....elaedlleayefllrlrlrhqleaieageepdnyvdpeeLsklerdlLkealkvvkrl 137
                   Rlkal+++g +++    e+a+++l a+    r r+ + +e + ++e    +  ++ Ls+ er++L +al+v  rl
  CTQ29734.1  92 THRLKALEKRGFITRvpnpEDARSMLVALTSAGRERIDAAVETHVDNE----RQLLAGLSDGERQQLDQALRVLMRL 164
                 479******999864333399999999999999999999999884444....347899**************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1296.29
//
Query:       CTQ29735.1  [L=318]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-26   94.0  15.8    2.8e-18   66.3   3.1    2.1  2  NicO      High-affinity nickel-transport protein
  ------ inclusion threshold ------
       0.12   12.3  18.2      0.024   14.6  12.4    2.6  3  DsbD_2    Cytochrome C biogenesis protein transmembrane regio
        1.3    9.2   8.6         10    6.3   0.5    3.5  3  YtpI      YtpI-like protein


Domain annotation for each model (and alignments):
>> NicO  High-affinity nickel-transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   3.1   4.6e-22   2.8e-18       2     109 ..      67     174 ..      66     200 .. 0.85
   2 !   33.6   4.8   4.2e-12   2.5e-08     178     281 ..     202     304 ..     195     305 .. 0.86

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 4.6e-22
        NicO   2 lvliglsflyGvrHAvdagHgkaiirklmqagktalkrGillslgsslvvvlvavllvvaavlvlrltslsetgaaigteiasFllvilllnllllrkl 100
                 ++l + +flyGv+HAv++gHgk+i+ +++++++++l+++ +  ++ sl+++++a+l v+++++ l+l       + +++e +s+l + ++++ +++r l
  CTQ29735.1  67 IWLLVGAFLYGVLHAVGPGHGKFIVTTYLSTNQESLTAARVVPFLGSLLQGVTAILFVFILAVGLNLAAGDLSASSWYVEKISALTIGVFGAYVIFRAL 165
                 578888************************************************************99999999**********************999 PP

        NicO 101 rklfrkler 109
                  +l    + 
  CTQ29735.1 166 QSLWPTKQV 174
                 887644333 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 4.2e-12
        NicO 178 fdsilalpalfavGlrlcdgadivlmfaalnwaflggrklvyamsitgtsitvalliglivtlklvak.kfalsgslwaaiisle..leivGavlvllf 273
                  d+++ l +++a+G r+c+ga+++l+fa   +  ++g+ +v++m++ gt+  +  l  l+ +++   + ++a + +    +++l   ++i+G + ++lf
  CTQ29735.1 202 ADWKTRLGVVLAIGVRPCSGAIMILLFANALGIVSWGIAAVMSMAL-GTALSILGLSLLVHYARHRTVkRLATNHR---PRPWLVplMKILGGLALILF 296
                 6899******************************************.99999999999999998765505555555...6777777799***99999** PP

        NicO 274 allllgas 281
                 a+ l  ++
  CTQ29735.1 297 AVGLFFSV 304
                 99998775 PP

>> DsbD_2  Cytochrome C biogenesis protein transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   5.0      0.88   5.2e+03     145     170 ..     110     136 ..      13     162 .. 0.65
   2 ?   14.6  12.4     4e-06     0.024      63     185 ..     139     271 ..     111     298 .. 0.69
   3 ?   -0.6   0.1      0.18   1.1e+03      67      90 ..     279     302 ..     267     315 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.88
      DsbD_2 145 asgsaleGa.lvmlaFgLGTlpalllf 170
                   gs+l+G+ +++++F L+  ++l + 
  CTQ29735.1 110 FLGSLLQGVtAILFVFILAVGLNLAAG 136
                 334444444123344444444444433 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 4e-06
      DsbD_2  63 ageleglrallgvllgllllllglklllkkkllk........lerlgkllsrllkklakkl..kslasalllGllnGllpCglvysalllalasgsale 151
                 +++  +++++ ++ +g++++++++++l + + +k         ++ ++ +      + + l  ++++++l++ l+ G+ pC    ++ll+a a g +++
  CTQ29735.1 139 SASSWYVEKISALTIGVFGAYVIFRALQSLWPTKqvirrltpAHQHDASCGCGHHGVGQDLqgADWKTRLGVVLAIGVRPCSGAIMILLFANALGIVSW 237
                 222235777777888888888777777544433334223222222222222222333333366889999999999************************ PP

      DsbD_2 152 GalvmlaFgLGTlpalllfglllgllskklrkkl 185
                 G+++ +  +LGT +++l ++ll+ ++++++ k+l
  CTQ29735.1 238 GIAAVMSMALGTALSILGLSLLVHYARHRTVKRL 271
                 **************************88776554 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.18
      DsbD_2  67 eglrallgvllgllllllglklll 90 
                 ++l  l+++l gl+l+l+++ l++
  CTQ29735.1 279 PWLVPLMKILGGLALILFAVGLFF 302
                 567777777777777777777765 PP

>> YtpI  YtpI-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.6     0.063   3.7e+02      40      82 ..     124     167 ..     113     172 .. 0.77
   2 ?    6.3   0.5    0.0017        10      31      53 ..     240     262 ..     235     271 .. 0.85
   3 ?    5.7   0.0    0.0027        16      18      52 ..     269     303 ..     259     309 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.063
        YtpI  40 lflilfginqllllestvalvvgav.flvlGlanlfaGiraykh 82 
                 +f+++ g+n+     s+ ++ v+ +  l +G++ ++  +ra + 
  CTQ29735.1 124 VFILAVGLNLAAGDLSASSWYVEKIsALTIGVFGAYVIFRALQS 167
                 68888888988888888888888774588999988888888765 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0017
        YtpI  31 sakasialGlflilfginqllll 53 
                 +a +s+alG+ l+++g+ +l+ +
  CTQ29735.1 240 AAVMSMALGTALSILGLSLLVHY 262
                 689***************99885 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0027
        YtpI  18 afrtkdplekkllsakasialGlflilfginqlll 52 
                  + +++++ + +l   ++i+ Gl lilf++ ++++
  CTQ29735.1 269 KRLATNHRPRPWLVPLMKILGGLALILFAVGLFFS 303
                 4556778889999999**************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2269.65
//
Query:       CTQ29736.1  [L=119]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 939.20
//
Query:       CTQ29737.1  [L=201]
Description: tyrosine recombinase/inversion of on/off regulator of fimA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-49  165.5   0.0      1e-48  165.3   0.0    1.0  1  Phage_integrase  Phage integrase family


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.3   0.0   5.8e-53     1e-48       2     170 ..      12     180 ..      11     182 .. 0.98

  Alignments for each domain:
  == domain 1  score: 165.3 bits;  conditional E-value: 5.8e-53
                      HHHHHHHHHHHHCCGC.HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHH.CHCCTT CS
  Phage_integrase   2 vltedeverllaalee.slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellska.leeaek 93 
                      +lt++e+e+ll+a+++ + ++r+++l+ l++ +GlR+sE+++Lr++d+dl+ +++++  +++K++ ++++pl ++   +lk++l+ + +  +  
       CTQ29737.1  12 FLTQNEIESLLKAADTgPYAARNYCLTLLCFIHGLRASEICRLRISDIDLAARCVYI--HRLKKGFSTTHPLLDKEIYALKRWLAIRsSWPQAA 103
                      79*******************************************************..****************************8889999 PP

                      TSBSSBETTSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCC CS
  Phage_integrase  94 sellfaskrgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthva 170
                      se+lf+s++g+plsrq++++++ + +  ag+  +++pH+lRhs++ aL++ g+d+r +q++lGH++i++t +Yt+++
       CTQ29737.1 104 SEWLFLSRKGNPLSRQQFYQIIASSGGLAGLPLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYTASN 180
                      **************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1704.44
//
Query:       CTQ29738.1  [L=202]
Description: tyrosine recombinase/inversion of on/off regulator of fimA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-48  163.3   0.7    5.3e-48  163.1   0.7    1.0  1  Phage_integrase  Phage integrase family
  ------ inclusion threshold ------
      0.049   13.5   0.1       0.13   12.0   0.1    1.8  1  BTRD1            Bacterial tandem repeat domain 1
      0.061   12.2   0.8       0.16   10.9   0.2    1.8  2  DUF3435          Protein of unknown function (DUF3435)


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.1   0.7   8.9e-52   5.3e-48       2     171 ..       6     176 ..       5     177 .. 0.99

  Alignments for each domain:
  == domain 1  score: 163.1 bits;  conditional E-value: 8.9e-52
                      HHHHHHHHHHHHCCGC.HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHH..CHCCT CS
  Phage_integrase   2 vltedeverllaalee.slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellska..leeae 92 
                      +lt++ev+++++a+++ ++  rd++l+ l++++G+RisEll L++ dldl +g+++v  r++K++ ++++pl     e+++++  ++  +++a+
       CTQ29738.1   6 FLTAKEVQAMMQAARQgPTGERDYCLILLAFRHGMRISELLDLHYHDLDLHEGRVNV--RRLKNGFSTIHPLRFDEREAIERWSLVRagWKAAD 97 
                      89*******************************************************..**************************999****** PP

                      TTSBSSBETTSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCCH CS
  Phage_integrase  93 ksellfaskrgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthvak 171
                      k+++lf+s+rg  lsrq++++++++a+e+ag+ ++++pH+lRh+++ +L+e+g d+r +q++lGH++i++t +Yt++++
       CTQ29738.1  98 KTDALFISRRGTALSRQQAYRIIRSAGENAGTVTHTHPHMLRHACGYELAERGTDTRLIQDYLGHRNIRHTVRYTASNA 176
                      ***************************************************************************9985 PP

>> BTRD1  Bacterial tandem repeat domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.2e-05      0.13      35      50 .]     171     186 ..     165     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.2e-05
       BTRD1  35 YgvggearyaaiWeks 50 
                 Y+ ++ ar+a+iWe++
  CTQ29738.1 171 YTASNAARFAGIWERN 186
                 885599********86 PP

>> DUF3435  Protein of unknown function (DUF3435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.087   5.2e+02      30      55 ..      30      55 ..       8      56 .. 0.82
   2 ?   10.9   0.2   2.7e-05      0.16     164     227 ..     101     164 ..      92     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.087
     DUF3435 30 lllllaaftsnRpgalleLryrDlel 55
                +l+lla   + R + ll L y Dl l
  CTQ29738.1 30 CLILLAFRHGMRISELLDLHYHDLDL 55
                45567778889999999999999987 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 2.7e-05
     DUF3435 164 gvril.kdealtastlnsrlkrlgeiagfeepitpYklRrgaakalneSgevseaqrnlilqHas 227
                    i+ + +al+ +++   ++++ge+ag    ++p+ lR + + +l e + + +   +  l+H +
  CTQ29738.1 101 ALFISrRGTALSRQQAYRIIRSAGENAGTVTHTHPHMLRHACGYELAE-RGTDTRLIQDYLGHRN 164
                 45566578999********************************99988.4444455555566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1825.84
//
Query:       CTQ29739.1  [L=182]
Description: major type 1 subunit fimbrin (pilin) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-22   79.7  11.0    2.6e-22   79.7  11.0    1.4  2  Fimbrial      Fimbrial protein
     0.0021   18.3  17.0      0.028   14.6  11.4    2.9  2  FimA          Type-1 fimbrial protein, A
  ------ inclusion threshold ------
        1.7    8.6   8.7       0.14   12.1   3.3    2.0  2  Sugarporin_N  Maltoporin periplasmic N-terminal extension


Domain annotation for each model (and alignments):
>> Fimbrial  Fimbrial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3       1.6   9.5e+03      63      79 ..      14      30 ..      11      32 .. 0.68
   2 !   79.7  11.0   4.4e-26   2.6e-22       2     153 ..      34     181 ..      33     182 .] 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.6
                EEEEE-BSSTTTTEB-- CS
    Fimbrial 63 vsssgsaaaqspnlllt 79
                +s+s++aa+++ ++++ 
  CTQ29739.1 14 LSLSSTAALADTTTVNG 30
                56667777777777775 PP

  == domain 2  score: 79.7 bits;  conditional E-value: 4.4e-26
                 EEEEEE..E-SSSEEEHHHSS.EEEEEEEETGGSBST.EBEEEEEEEEEEE.E-TT..THSEEEEEEEE-BSSTTTTEB--.BSST.TT-SSEEEEEEE CS
    Fimbrial   2 nfngtistraatCeitagtpa.tVdfpkisvqelnng.egsrsapfeiqvq.Cssggqnaigiqvsssgsaaaqspnlllt.ssgasalatgVGIrlyd 96 
                 +f+g++  ++a+C+++ag+ + tV+++++  ++l+++  +s+ + f+iq+  C+++  +a ++ v++ g+a  +s +++l  +++a   at+VG+++ d
  CTQ29739.1  34 HFKGEV--VNAACAVDAGSIDqTVQLGQVRSAKLATAgSTSSAVGFNIQLDdCDTT--VATKASVAFAGTAIDSSNTTVLAlQNSAAGSATNVGVQILD 128
                 89****..***********99****************999****************..*******9996665555555555155554449********* PP

                 TTSSB.E-BSSS-EE--EEECSEE.EEEEEEEEEEES..SBEESSEEEEEEEEEEEE CS
    Fimbrial  97 sngtalltlnaavsgspvestalsrssitftAslkklpggtptaGrvnAtAtvvvky 153
                 ++gt+ l+l++a+ ++  + +++  + i+f+A+++++  g++taG +nA At++v+y
  CTQ29739.1 129 NTGTP-LALDGATFSAATTLNDGP-NIIPFQARYYAT--GAATAGIANADATFKVQY 181
                 *****.988888754444444443.68**********..69999************9 PP

>> FimA  Type-1 fimbrial protein, A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.3     0.092   5.5e+02       5      34 ..      18      48 ..      14      60 .. 0.69
   2 !   14.6  11.4   4.6e-06     0.028       5     143 .]      61     182 .]      57     182 .] 0.72

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.092
        FimA  5 srkalkdvGetaGltv.fdvkltectsaldG 34
                s  al+d+    G+tv f+ ++ + + a+d 
  CTQ29739.1 18 STAALADTTTVNGGTVhFKGEVVNAACAVDA 48
                6678888888888887466666666666664 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 4.6e-06
        FimA   5 srkalkdvGetaGltvfdvkltectsaldGaqvklffe.sGssvdyvsgnlkaiaadaaGveqvqllkadnvqanldgsaiflGkdkaaqdvqtflvse 102
                     l+ +G+t+    f+++l +c  ++  +   +f   +  s + +   l++ aa +a ++ vq l+  ++   ldg++           +       
  CTQ29739.1  61 RSAKLATAGSTSSAVGFNIQLDDCDTTVATKASVAFAGtAIDSSNTTVLALQNSAAGSATNVGVQILDNTGTPLALDGATFS---------AA------ 144
                 566799**********************999766774303344445556778888888889999999888888888876642.........11...... PP

        FimA 103 tiGsdtygatlrylaqyiasGassivaGnlksqvgfsvaye 143
                 t   d+    + + a y+a+Ga++  aG  ++   f v ye
  CTQ29739.1 145 TTLNDG-PNIIPFQARYYATGAAT--AGIANADATFKVQYE 182
                 223455.45677888888888888..777777777777775 PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.3   2.3e-05      0.14       1      28 [.       1      28 [.       1      29 [. 0.96
   2 ?   -2.9   0.2       1.2   6.9e+03      10      23 ..      88     102 ..      86     106 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.3e-05
  Sugarporin_N  1 Mkkktlalaialllstaasvaaaaslti 28
                  Mk+ktla+ +  +ls+ + +a a++ t+
    CTQ29739.1  1 MKIKTLAMIVVSALSLSSTAALADTTTV 28
                  9******************9****9998 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.2
  Sugarporin_N  10 ialllstaasv.aaa 23 
                   +a  +s+a++  a +
    CTQ29739.1  88 VATKASVAFAGtAID 102
                   666677777763433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1650.65
//
Query:       CTQ29740.1  [L=178]
Description: fimbrial protein involved in type 1 pilus biosynthesis [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-22   80.9   0.0    1.4e-22   80.6   0.0    1.0  1  Fimbrial  Fimbrial protein
     0.0056   16.9   0.4       0.53   10.5   0.0    2.2  2  FimA      Type-1 fimbrial protein, A


Domain annotation for each model (and alignments):
>> Fimbrial  Fimbrial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   1.5e-26   1.4e-22       3     154 .]      33     178 .]      31     178 .] 0.89

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 1.5e-26
                 EEEEE..E-SSSEEEHHHSS.EEEEEEEETGGSBST.EBEEEEEEEEEEE.E-TT..THSEEEEEEEE-BSSTTTTEB--BSST.TT-SSEEEEEEETT CS
    Fimbrial   3 fngtistraatCeitagtpa.tVdfpkisvqelnng.egsrsapfeiqvq.CssggqnaigiqvsssgsaaaqspnllltssgasalatgVGIrlydsn 98 
                 f+g i   a++C+++ag+++ tV++++is + +++  e s+++pf i++q Cs+   +++ + v++ g a+ ++p+ l  ++g++  a+g+GI l ds+
  CTQ29740.1  33 FQGLI--MASSCRVEAGDRQmTVNLGQISSNRFHAVgEDSNPIPFAIHLQdCSTA--VSQHVGVTFHGVADGKNPDVLSVGEGPGI-ASGIGIALFDSQ 126
                 56666..899*********************************************..9999999999*****************84.68********** PP

                 SSB.E-BSSS-...EE--EEECSEE.EEEEEEEEEEES..SBEESSEEEEEEEEEEEEE CS
    Fimbrial  99 gtalltlnaav...sgspvestalsrssitftAslkklpggtptaGrvnAtAtvvvkyq 154
                 g++ l+ln  +   ++   +      ++ +f A++++++  ++t G++nA+A++ ++yq
  CTQ29740.1 127 GQQ-LPLNRPAdrwISLYRGP-----TTLNFVAKYRATG-RQVTGGAANAQAWFSLTYQ 178
                 ***.99998773333333333.....5567********5.99999*************8 PP

>> FimA  Type-1 fimbrial protein, A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   5.9e-05      0.53       3      42 ..      57      95 ..      55     106 .. 0.88
   2 !    4.5   0.2     0.004        36     111     142 ..     147     177 ..     141     178 .] 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.9e-05
        FimA  3 tvsrkalkdvGetaGltvfdvkltectsaldGaqvklffe 42
                 +s + ++ vGe +   +f ++l +c+ a+  ++v++ f 
  CTQ29740.1 57 QISSNRFHAVGEDSNPIPFAIHLQDCSTAVS-QHVGVTFH 95
                68999999*******************9995.89998885 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.004
        FimA 111 atlrylaqyiasGassivaGnlksqvgfsvay 142
                 +tl ++a+y a+G      G  ++q  fs++y
  CTQ29740.1 147 TTLNFVAKYRATGRQV-TGGAANAQAWFSLTY 177
                 69***********876.899999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       198  (0.0110436); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1574.33
//
Query:       CTQ29741.1  [L=234]
Description: chaperone, periplasmic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-38  131.7   0.0    2.3e-38  130.9   0.0    1.4  1  PapD_N    Pili and flagellar-assembly chaperone, PapD N-termi
    1.9e-11   44.2   0.4    5.8e-11   42.6   0.2    1.9  2  PapD_C    Pili assembly chaperone PapD, C-terminal domain


Domain annotation for each model (and alignments):
>> PapD_N  Pili and flagellar-assembly chaperone, PapD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.0   2.6e-42   2.3e-38       1     124 [.      30     149 ..      30     150 .. 0.93

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 2.6e-42
                 EEEESSSEEEEETTSSEEEEEEEE-SS.S-EEEEEEEECTTSSSTCCSSCS.SEEEESSEEEE-TTEEEEEEEEE..SS---SSS-EEEEEEEEEE--- CS
      PapD_N   1 gvviggtrviynadekeasvtvkNtgk.epylvqswvddgdeeaedekakaspfvvtPPlfrlepgeeqvlRivt.agkklpkdrEslfwlnvkeiPpk 97 
                 gv +g+trviy+a++k++++ v+N+++ + +l+qswv++     +d++++   fv+tPPlf +++++e++lRi+  ++++lp+drEslfw+nvk+iP+ 
  CTQ29741.1  30 GVALGATRVIYPAGQKQVQLAVTNNDDnSTWLIQSWVEN-----ADGQRDG-RFVITPPLFAMQGKKENTLRIIDaTNNQLPQDRESLFWMNVKAIPSM 122
                 6899**********************9899*********.....6667777.8********************6547999******************* PP

                 --.TCEEEEEEEEEEEEEEEEEEETTS CS
      PapD_N  98 kkkkekknklqlalrsriklfyrPagl 124
                 +k+k ++n+lqla+ srikl yrP +l
  CTQ29741.1 123 DKSKLSDNTLQLAIISRIKLYYRPGKL 149
                 *99999******************987 PP

>> PapD_C  Pili assembly chaperone PapD, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.48   4.3e+03      28      40 ..      37      49 ..      21      60 .. 0.59
   2 !   42.6   0.2   6.4e-15   5.8e-11       2      62 ..     172     226 ..     171     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.48
                EEE-TTEEEEETT CS
      PapD_C 28 gmvaPfssatfak 40
                 ++ P ++++++ 
  CTQ29741.1 37 RVIYPAGQKQVQL 49
                6777888888822 PP

  == domain 2  score: 42.6 bits;  conditional E-value: 6.4e-15
                 EE-SSS-EEEEEEEEEETTEEEEEEEEEE-TTEEEEETT--S--TT-EEEEEEE-TTS-EE CS
      PapD_C   2 kNptPYyvtfsslevkgggkslaleagmvaPfssatfakkaapaagatvsftvINDyGgiv 62 
                 +NptPYy t+++l +++    l++    v+P +  ++  k ++ ag+t+++++INDyG+ +
  CTQ29741.1 172 TNPTPYYLTVTELNAGTR--ILEN--ALVPPMGKTSV--KLPADAGNTITYRTINDYGALT 226
                 8*********77766655..4444..57*********..*******************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 2046.61
//
Query:       CTQ29742.1  [L=870]
Description: outer membrane usher protein, type 1 fimbrial synthesis [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.9e-220  733.4  20.9   2.4e-220  733.1  20.9    1.1  1  Usher            Outer membrane usher protein
    6.3e-51  172.2   0.0    1.6e-50  170.9   0.0    1.7  1  PapC_N           PapC N-terminal domain
    1.1e-24   86.0   0.0    3.1e-24   84.5   0.0    1.9  1  PapC_C           PapC C-terminal domain
  ------ inclusion threshold ------
      0.061   13.4   0.2       0.18   11.9   0.2    1.7  1  HCMVantigenic_N  Glycoprotein B N-terminal antigenic domain o
        0.1   12.5   0.0        2.9    7.9   0.0    2.6  2  PEGA             PEGA domain


Domain annotation for each model (and alignments):
>> Usher  Outer membrane usher protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  733.1  20.9  6.6e-224  2.4e-220       1     551 []     200     782 ..     200     782 .. 0.98

  Alignments for each domain:
  == domain 1  score: 733.1 bits;  conditional E-value: 6.6e-224
                 EEEEEEEEEETTEEEEEEE..EEEEEE--.....--EEEEEEEEEEEEETTTTEEEEEEEEE--SSSS---EEEEEEEEE-GGGS-CCCCCEEEEEEEE CS
       Usher   1 ylnlqsGlNlgaWrLrsdsqlswsksegn.....enkwkssrtylqraipqlkskLtlGesytssdiFdsvsfrGvsLasddnmlPdslrgyaPevrGi 94 
                 ylnlqsGlN+gaWrLr++s  +ws+s+g      en+w++ +++l+r+i++l+s+LtlG+syt++d+Fd+++frG++LasddnmlPds++g+aP+++Gi
  CTQ29742.1 200 YLNLQSGLNIGAWRLRDNS--TWSYSSGGstssnENRWQHVNSWLERDITPLRSRLTLGDSYTNGDVFDGINFRGAQLASDDNMLPDSQKGFAPVIHGI 296
                 79*****************..66655544458889**************************************************************** PP

                 ESSSEEEEEECTTEEEEEEEE-SEEEEE-S---TTTTCEEEEEEEETTS-EEEEEEEE---TT---TT-EEEEEEEEEEE-SSTTB---EEEEEEEEEE CS
       Usher  95 ArtnAkVtirqnGyviYqtlVppGpFeiqdlnptsssgdLdVtveEadGsvqeftvpyasvplllreGqvrYklaaGryrsnnsqqekpffiqaevsyG 193
                 Ar++A+V irqnGy iYq++VppGpF+i+dl+ ++++gdL+Vt++EadGs q f+vp ++vp+l+reG++r++l+aG+yrs nsqqe+p f+q+++++G
  CTQ29742.1 297 ARGTAQVSIRQNGYEIYQSTVPPGPFTIDDLYAAGNGGDLQVTIKEADGSRQVFSVPWSTVPVLQREGHTRFALTAGEYRSGNSQQETPDFFQGTAMHG 395
                 *************************************************************************************************** PP

                 -GGGEEEEEEEEEESSEEEEEEEEEEEEETTEEEEEEEEEEEEEETTSEEEEEEEEEEEEEE-B-TTSEEEEEEEEEEE-TT---HHHHSBSSEE-... CS
       Usher 194 lpngltlYgGlllaedYqAlalglgknlgelGalSvdvtqsrskldkqskekGqsyrlsYakslnetgtniqlagyrystkgfvtlsdaldarkke... 289
                 lp+g+tlYgG++la++Y+A++lg+gkn+g +GalS+d+tq++++l+++s+++Gqs+r+ Y+ksl+etgtn+ql+gyryst+g+++++d++++r+++   
  CTQ29742.1 396 LPAGWTLYGGTQLADRYRAFNLGVGKNMGYFGALSLDITQANATLADDSEHQGQSVRFLYNKSLDETGTNLQLVGYRYSTRGYYNFADTTYRRMSGysv 494
                 *************************************************************************************************** PP

                 .............---EETTS-EEEEEEEEEEEEESSSEEEEEEEEEEEESSS--EEEEEEEEEEEEETTEEEEEEEEEEE-SSS-SEEEEEEEEEEEE CS
       Usher 290 .............kdennltnnkkeklqlnvsqslgdygslylsgsrqtYwktsqknknlqlsyntnigrvsvslslsaskseneneeddllslnlSiP 375
                              +d++nl ++k++k+ql+v+q+lg++ +lylsgs+qtYw+t++ +++lq+++n ++ ++++sls+s +k+++++++d++l++n++iP
  CTQ29742.1 495 etqdgviqvkpkfTDYYNLAYSKRGKVQLSVTQQLGRTATLYLSGSHQTYWGTDDADEQLQAGLNAAVDDINWSLSYSLTKNAWQQGRDQMLAININIP 593
                 *************************************************************************************************** PP

                 SGGGS-T........EEEEEEEEEESSSTEEEEEEEEEEES.STTEEEEEEEEEEESTSS-....EEEEEEEETSSEEEEEEEEEESSEEEEEEEEEEE CS
       Usher 376 lgrllsr........anasysltrnnsgktssetgvsgtll.ddnlsYsvnaglssdgkes....lsanlsyqasygevslsysysrdysqlnlslsGg 461
                 ++++l++        a asysl+++ +g++++ +g++gtll d+nlsYsv++g++  g+ +    +   l+y++ yg+++++ys s++ +ql +++sGg
  CTQ29742.1 594 FSHWLRSdsrsvwrhASASYSLSHDLNGRMTNLAGLYGTLLeDNNLSYSVQTGYAGGGNGDngstGYTALNYRGGYGNANVGYSRSDGFKQLYYGVSGG 692
                 ****99999*****99***************************************998887777788999***************************** PP

                 EEEETTEEEEES---SSEEEEE-TT-TS-BBTTSTT-B--TTSEEEES---TTS-EEEEB-GGGS-TTEEES-SEEEE-B-TT-EEEEE- CS
       Usher 462 vvahakGvtlsqelgdtrvlikadgvagvrvenqtgvktdrrGyavvpyltpYrenrveldtnklpedvelentvaqvvpteGAvvkaeF 551
                 v+aha+G+tlsq+l+dt+vl+ka+g+ gv+venqtgv+td+rGyav+py+t+Yrenr++ldtn+l ++v+l+ +v++vvpt+GA+v+a+F
  CTQ29742.1 693 VLAHANGITLSQPLNDTVVLVKAPGAGGVKVENQTGVRTDWRGYAVLPYATEYRENRIALDTNTLADNVDLDDAVVSVVPTHGAIVRANF 782
                 ****************************************************************************************99 PP

>> PapC_N  PapC N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.9   0.0   4.5e-54   1.6e-50       1     145 [.      40     184 ..      40     185 .. 0.99

  Alignments for each domain:
  == domain 1  score: 170.9 bits;  conditional E-value: 4.5e-54
                 EXXCCCCTTXTTHHHHHHHHHTT-SS-SEEEEEEEEETTEEEEEEEEEEEECCTCCCEEEE-BHHHHHHTTB-GGGSCCGHHTSTTSC--HHHHSTT-E CS
      PapC_N   1 eFnpdfLegssasnvdlsrFskgnavlpGeYrvdvyvNgkeigrqevefkaekkkkklepcltrelleqlgvkleklpelakaqeeeCvdlsalipgas 99 
                 +Fnp+fL ++ a+++dls F+kg++v+pG+Yrvd+y+N+ ++ +++v+f+a++++++l+pcltr +l ++gv++ ++p +a  ++++Cv+l++li++a+
  CTQ29742.1  40 YFNPRFLADDPAAVADLSGFEKGQEVPPGTYRVDIYLNNGFMTTRDVTFQADAQGHGLSPCLTRGQLASMGVDTGRVPGMATLDSTACVPLTTLISEAT 138
                 7************************************************************************************************** PP

                 EEEETTTTEEEEE--GGGBSTTSTTSSXCCGSBSXTTEEEEEEEEE CS
      PapC_N 100 vkfdlakqrLdlsiPqaalknsargyvspeewdeGinaallnYnan 145
                 ++fd+++qrL l++Pqa++ n+argy++pe+wd+Gi+a+l+nYn++
  CTQ29742.1 139 TRFDVGQQRLYLTVPQAFMGNHARGYIPPELWDNGITAGLINYNFT 184
                 ********************************************97 PP

>> PapC_C  PapC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   8.7e-28   3.1e-24       1      66 []     791     855 ..     791     855 .. 0.96

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 8.7e-28
                 EEEEEETTTEE--TT-EEEETTSSS-EEB-CCCEEEEECE-SEEEEEEES-SSTTSEEEEEEE--C CS
      PapC_C   1 lltltradGkplPfGAevtdeengkvgiVgqgGqvylrglpdqgtLtvkwgegssqqCrasytlpe 66 
                 l+tlt+  Gkp+PfGA +t ++n++ +iV+++Gqvyl+g+p +g+++vkwg+g+++qC a+y+lp+
  CTQ29742.1 791 LMTLTH-RGKPVPFGALATGDSNQSGSIVADNGQVYLSGMPLAGKVRVKWGDGPDAQCVADYRLPP 855
                 89****.**************77777**************************************95 PP

>> HCMVantigenic_N  Glycoprotein B N-terminal antigenic domain of HCMV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2     5e-05      0.18      11      32 ..     599     620 ..     597     623 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5e-05
  HCMVantigenic_N  11 ssqsgSVSqhvTSSqtvSHrvN 32 
                      +s s+SV +h   S  +SH+ N
       CTQ29742.1 599 RSDSRSVWRHASASYSLSHDLN 620
                      799*****************99 PP

>> PEGA  PEGA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.093   3.3e+02      31      56 ..      65      90 ..      62      94 .. 0.73
   2 ?    7.9   0.0   0.00079       2.9      21      53 ..     286     318 ..     281     322 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.093
        PEGA 31 leaGnyslrveke.GYedlektvtvta 56
                +++G+y++++ +  G+++ +++vt++a
  CTQ29742.1 65 VPPGTYRVDIYLNnGFMT-TRDVTFQA 90
                89********97526755.55666665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00079
        PEGA  21 ylGkTPvtlsleaGnyslrvekeGYedlektvt 53 
                 + G +Pv   ++ G+ ++ + + GYe +  tv 
  CTQ29742.1 286 QKGFAPVIHGIARGTAQVSIRQNGYEIYQSTVP 318
                 67999**999******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.37
# Mc/sec: 7006.83
//
Query:       CTQ29743.1  [L=176]
Description: minor component of type 1 fimbriae [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-20   73.7   2.6    2.3e-20   73.4   2.6    1.0  1  Fimbrial         Fimbrial protein
  ------ inclusion threshold ------
      0.081   12.5   0.0       0.13   11.8   0.0    1.3  1  Gal-bind_lectin  Galactoside-binding lectin


Domain annotation for each model (and alignments):
>> Fimbrial  Fimbrial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   2.6   2.5e-24   2.3e-20       2     154 .]      28     176 .]      27     176 .] 0.88

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 2.5e-24
                 EEEEEE..E-SSSEEEHHHSS.EEEEEEEETGGSBST.EBEEEEEEEEEEE.E-TT..THSEEEEEEEE-BSSTTTTEB--BSST.TT-SSEEEEEEET CS
    Fimbrial   2 nfngtistraatCeitagtpa.tVdfpkisvqelnng.egsrsapfeiqvq.CssggqnaigiqvsssgsaaaqspnllltssgasalatgVGIrlyds 97 
                  ++g++  r+++C++   +++ tVd+++  ++++ +  ++++++pf i ++ C +       ++v+++g a++ + +ll+ + gasa a g+G+ + d+
  CTQ29743.1  28 AISGYV--RDNACAVAGESKDfTVDLQDNAAKQFYAVgATTPPVPFRIVLSpCGTS---VTAVKVGFTGVADSINTSLLKLDAGASA-AAGMGVEILDQ 120
                 567888..*********************************************999...57899999*****************985.68********* PP

                 TSSB.E-BSSS-EE--EEECSEE....EEEEEEEEEEES..SBEESSEEEEEEEEEEEEE CS
    Fimbrial  98 ngtalltlnaavsgspvestalsr...ssitftAslkklpggtptaGrvnAtAtvvvkyq 154
                 +++  l++na +s  +++  +l++   +  +f A+l ++   ++taG+vnAtAt+++++q
  CTQ29743.1 121 QQSR-LPVNAPSSTMTWT--TLTPgqtNILNFYARLMATQ-VPVTAGHVNATATFTLEFQ 176
                 ****.9999766544444..44443357788*******95.9999************998 PP

>> Gal-bind_lectin  Galactoside-binding lectin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.4e-05      0.13       4      48 ..      15      72 ..      12      84 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.4e-05
                     EEESCEC-TTEEEEEEEEESTT-.......SBEEEEEEES........TSTTTEEEEE CS
  Gal-bind_lectin  4 lelpcgleagssitisGipkaka.......sqfsinLqggk......edeedpdiiLh 48
                     l  p  l+a s+i isG+++++a       + f+++Lq +       +  ++p++ ++
       CTQ29743.1 15 LGAPAALAADSTIAISGYVRDNAcavagesKDFTVDLQDNAakqfyaVGATTPPVPFR 72
                     556899**************7777777777********99765555555566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1366.04
//
Query:       CTQ29744.1  [L=166]
Description: minor component of type 1 fimbriae [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.057   13.6  12.2      0.054   13.7   6.1    3.1  2  Big_3_5   Bacterial Ig-like domain (group 3)


Domain annotation for each model (and alignments):
>> Big_3_5  Bacterial Ig-like domain (group 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   6.1     3e-06     0.054      27      74 ..      24      94 ..      11     109 .. 0.55
   2 ?    0.8   0.1     0.031   5.6e+02      10      32 ..     137     159 ..     125     164 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-06
                EEEEEETTEE-SS-EE--T...T..............S......EEEEEEE-SS-EEEEEEEEEE-TTS-- CS
     Big_3_5 27 tVtftdggttlgtavllsa...n..............G......tAtltvsalaaGthsitAtYsGdanya 74
                 Vt+t++g++++ + ++s+   +              G      +++l++s+ ++Gt  ++At+sG+a+ +
  CTQ29744.1 24 DVTLTVNGKVVARPCTVSTvnaTvelgdlytfsligaGsasawhSVALDLSNCPVGTSRVKATFSGTADST 94
                344444444444444433211102222222222222232223337777888899*************8744 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.031
                 EEEEEE--CCCCTTS--EEEEEE CS
     Big_3_5  10 vtltatVtaasggtptGtVtftd 32 
                 + l++   +++gg+++Gt++ ++
  CTQ29744.1 137 FPLQVRALSVNGGATQGTIQAVI 159
                 34444445666789999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1359.18
//
Query:       CTQ29745.1  [L=302]
Description: minor component of type 1 fimbriae [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-63  210.3   1.1    1.6e-62  209.5   1.1    1.4  1  FimH_man-bind  FimH, mannose binding
    1.6e-07   31.7   8.7    1.6e-07   31.7   8.7    2.6  2  Fimbrial       Fimbrial protein


Domain annotation for each model (and alignments):
>> FimH_man-bind  FimH, mannose binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.5   1.1   1.8e-66   1.6e-62       1     145 []      26     170 ..      26     170 .. 0.99

  Alignments for each domain:
  == domain 1  score: 209.5 bits;  conditional E-value: 1.8e-66
                    EEETTSEEE.TTSEEEEEEE---SBEETTSEEEEEGGGTEEEE-SSTTT--EEEEEEEEEEEHHHHHHEEEEEEETTEEEEES-SS----EEE-SS CS
  FimH_man-bind   1 ckvangaqi.igsgsanvyvnLepsvevgqnLvvDLsqqisCkndyggvivDyvnLvsGsaygGvLanfkGsvkyagssYplPltsetkvleikdk 95 
                    ck+a ga+i ig+gsanvyvnL+p v+vgqnLvvDLs+qi+C+ndy+++i+Dyv+L++GsaygGvL++f+G+vky+g+sYp+P+t+et ++ ++++
     CTQ29745.1  26 CKTATGATIpIGGGSANVYVNLTPAVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSSFSGTVKYNGTSYPFPTTTETARVIYDSR 121
                    9*********************************************************************************************** PP

                    S-EE--EEEEEEESTTSSEEEE-TTSEEEEEEEEEEESSSS-EE..EEEE CS
  FimH_man-bind  96 tllplplklYltpisaagGvviksgeliaklemykiadldegnpktfiWn 145
                    t +p+p++lYltp+s+agGv+i++g+lia l ++++++++++   +fiWn
     CTQ29745.1 122 TDKPWPAVLYLTPVSTAGGVAITAGSLIAVLILHQTNNYNSDSF-QFIWN 170
                    ***************************************99986.7***8 PP

>> Fimbrial  Fimbrial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2     0.085   7.6e+02      50      55 ..      64      75 ..      23     158 .. 0.52
   2 !   31.7   8.7   1.8e-11   1.6e-07       8     154 .]     178     302 .]     169     302 .] 0.79

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.085
                E..E-TT..... CS
    Fimbrial 50 q..Cssg....g 55
                q  C++      
  CTQ29745.1 64 QifCHNDypetI 75
                333555533331 PP

  == domain 2  score: 31.7 bits;  conditional E-value: 1.8e-11
                 ..E-SSSEEEHHHSSEEEEEEEETGGSBSTEBEEEEEEEEEEEE-TT..THSEEEEEEEE-BSSTTTTEB--BSST.TT-SSEEEEEEETTSSB.E-BS CS
    Fimbrial   8 straatCeitagtpatVdfpkisvqelnngegsrsapfeiqvqCssggqnaigiqvsssgsaaaqspnllltssgasalatgVGIrlydsngtalltln 106
                 ++++  C+++a++  tV++p+++      g    s  + ++v C +     +++  ++sg+  a s+n++ t++++ + a+g+G++l+  ng+a +++n
  CTQ29745.1 178 VVPTGGCDVSARDV-TVTLPDYP------G----SMAVPLTVHCAQS----QQLGYYLSGT-TADSANAIFTNTASASPAQGIGVQLT-RNGSA-VPAN 258
                 56777899999998.99999999......4....677889999**99....4455544544.555556666655544458*******5.66788.8*** PP

                 SS-EE--EEECSEE.EEEEEEEEEEES..SBEESSEEEEEEEEEEEEE CS
    Fimbrial 107 aavsgspvestalsrssitftAslkklpggtptaGrvnAtAtvvvkyq 154
                 ++vs ++v+++ ++     +tA++ +++ g++taG+v+    +++ yq
  CTQ29745.1 259 STVSLGTVGTSPVN---LGLTATYARTT-GQVTAGNVQSIIGITFVYQ 302
                 ************99...78********7.9999*****9999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2328.59
//
Query:       CTQ29746.1  [L=470]
Description: putative fimbrial protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-51  174.0   0.3    5.3e-51  173.4   0.3    1.3  1  EAL       EAL domain
    0.00087   19.0   0.1     0.0042   16.8   0.1    2.2  1  HTH_23    Homeodomain-like domain
     0.0022   18.1   0.1      0.018   15.1   0.0    2.7  2  HTH_28    Helix-turn-helix domain
  ------ inclusion threshold ------
       0.12   12.4   4.2        3.2    7.9   0.1    3.5  3  HTH_20    Helix-turn-helix domain
       0.12   11.9   0.1       0.22   11.1   0.1    1.4  1  GerE      Bacterial regulatory proteins, luxR family


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.4   0.3   1.5e-54   5.3e-51       2     238 .]     217     448 ..     216     448 .. 0.93

  Alignments for each domain:
  == domain 1  score: 173.4 bits;  conditional E-value: 1.5e-54
                 HHHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--CHHCC-C CS
         EAL   2 ealrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlspaslade 100
                 +++ +a++++++++++QP+vd  ++++ g+e+l+rw+h+ + +++p++flp+++ +  +  l+ +vl++a+q + ++    ++++ +s+n+ ++  +++
  CTQ29746.1 217 QEWVQAIHDRQVFPVFQPIVD-SRSQLQGVEILIRWRHRGQ-VLHPQTFLPHFRADYTWLLLTAFVLQEAVQNINEY----PGTFYFSVNIPSSLADSD 309
                 7899****************6.77778***********866.89********************************9....99********66555555 PP

                 C...HHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH..HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHH CS
         EAL 101 e...fleelrellkqsgpspsrLvleitesellarlealq.eevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvk 195
                 +   ++e+ r+ l ++++  +rLvle +e+  ++ +++ + ++++a+L+++G+r++ldd+ ++ s +  ++rl++++ Kld s+++d+++d++a al+k
  CTQ29746.1 310 SllrMVEAARQQL-RQPEGVARLVLEYAET--IDFRHQSRsAAHVAQLQRAGVRVMLDDCFSQGSVIFPARRLHFNAYKLDMSIVNDAQHDPKALALIK 405
                 5666666666667.77788889********..999**************************************************************** PP

                 HCHHHHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT--- CS
         EAL 196 alialakelgikvvaegVeteeqlealrelgcdlvQGyllskp 238
                 +l+ +++  + ++vaegV++ +++++l++lg+d +QGyl+s+p
  CTQ29746.1 406 SLAYYCQLSDSRCVAEGVDSLAKFTQLKSLGIDRFQGYLFSPP 448
                 *****************************************99 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   1.2e-06    0.0042       8      35 ..     151     178 ..     149     184 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.2e-06
      HTH_23   8 lrillllaeGlsvreIAreLgvsrrTvy 35 
                 l+++l+l++G+++ e A++Lg s+ T+y
  CTQ29746.1 151 LKVILALLQGQTIGEQAQRLGLSQKTLY 178
                 689************************9 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.1e-06     0.018       3      30 ..     151     178 ..     151     179 .. 0.96
   2 ?   -2.8   0.0         2   7.1e+03      28      44 ..     314     331 ..     313     332 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.1e-06
      HTH_28   3 leiikllaaGhsvreaArelgisrrtvy 30 
                 l++i++l++G ++ e A++lg+s+ t+y
  CTQ29746.1 151 LKVILALLQGQTIGEQAQRLGLSQKTLY 178
                 79*************************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2
      HTH_28  28 tvyrWikryee.gGiagL 44 
                 +v   ++++++ +G+a L
  CTQ29746.1 314 MVEAARQQLRQpEGVARL 331
                 566677888888887766 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.087   3.1e+02      22      35 ..     110     123 ..      92     137 .. 0.83
   2 ?    7.9   0.1   0.00089       3.2      15      43 ..     154     179 ..     146     181 .. 0.89
   3 ?    2.2   0.2     0.052   1.8e+02      20      53 ..     325     359 ..     310     364 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.087
                 CTTB-HHHHHHHHT CS
      HTH_20  22 aegltaselaerld 35 
                 ++ l+++ela+rl+
  CTQ29746.1 110 PADLSCAELAHRLE 123
                 6679********94 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00089
                 HHHHHSTCTTB-HHHHHHHHTS-HHHHHH CS
      HTH_20  15 ilraLaraegltaselaerldlskntlsy 43 
                 il++L   +g+t +e a+rl+ls++tl+ 
  CTQ29746.1 154 ILALL---QGQTIGEQAQRLGLSQKTLYT 179
                 77788...******************985 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.052
                 STCTTB-HHHHHHHHTS-HHH.HHHHHHHHHHCTT CS
      HTH_20  20 araegltaselaerldlsknt.lsyHLrvLeeagL 53 
                 +++ ++ + e ae++d + ++    H+++L++ag 
  CTQ29746.1 325 PEGVARLVLEYAETIDFRHQSrSAAHVAQLQRAGV 359
                 566677788888999977777799*********95 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   6.1e-05      0.22       3      44 ..     146     187 ..     144     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.1e-05
                 S-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHH CS
        GerE   3 LskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkK 44 
                 L+  E++v   l +G++  e A++l++S+kT  +++    kK
  CTQ29746.1 146 LTHAELKVILALLQGQTIGEQAQRLGLSQKTLYTQRLAGVKK 187
                 8999***************************88877655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3634.87
//
Query:       CTQ29747.1  [L=90]
Description: putative acyltransferase with acyl-CoA N-acyltransferase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-21   76.0   0.0    2.1e-21   75.9   0.0    1.0  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
    2.6e-05   24.4   0.0    2.9e-05   24.3   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
      5e-05   23.2   0.0    6.2e-05   22.9   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    0.00038   20.8   0.0    0.00044   20.6   0.0    1.1  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0044   17.0   0.0     0.0047   16.9   0.0    1.2  1  FR47             FR47-like protein
     0.0064   16.6   0.0     0.0085   16.2   0.0    1.2  1  Acetyltransf_9   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   6.9e-25   2.1e-21       1      80 []       9      88 ..       9      88 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 6.9e-25
  Acetyltransf_CG  1 rfeltldegeevafleYevrkegvldfthTeVpeelrGkGiAkkLvkaalddareeglkvvptCsyvaaylekhpeyadl 80
                     +f++++ +g++va++ +  ++e+  +++hT V+++l+G+G++k+Lv ++++++r+e+ k++p+C+++++ ++   ey+d+
       CTQ29747.1  9 KFYVNDAQGNQVAEIVFVPTGEHLSIIEHTDVDPSLKGQGVGKQLVAKVVEKMRQEQRKIIPLCPFAKHEFDNTREYDDI 88
                     5888888899*******99**********************************************************996 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   9.6e-09   2.9e-05      56     105 ..      28      81 ..       5      86 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 9.6e-09
                     TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EE...EEETTE CS
  Acetyltransf_1  56 ekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vl...aveedn 105
                     + ++  +ie   V+p+  g+G+G++L+ +++e++r+e+ k i  +    +e dn
      CTQ29747.1  28 TGEHLSIIEHTDVDPSLKGQGVGKQLVAKVVEKMRQEQRKIIpLCpfaKHEFDN 81 
                     456888999999************************966656444444555555 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.1e-08   6.2e-05      26      86 ..       3      67 ..       1      72 [. 0.81

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.1e-08
  Acetyltransf_10 26 ieegealllvaeeggkivGviel.rdgshisll...fVdpeyrgqGigkaLleaveeeaekdgik 86
                     i eg+++++v + +g+ v  i    +g+h+s +    Vdp+ +gqG+gk+L+ +v e++++++ k
       CTQ29747.1  3 ILEGHNKFYVNDAQGNQVAEIVFvPTGEHLSIIehtDVDPSLKGQGVGKQLVAKVVEKMRQEQRK 67
                     5588999999999999998887768888655444339*********************9877655 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.5e-07   0.00044       3      49 ..       8      62 ..       6      85 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.5e-07
                    EEEEEEEETTEEEEEEEEEEESTCTEEEE....E-GGGTTSSHHHHHHHH.....T CS
  Acetyltransf_7  3 gevfVaeddgkivGfialslldaeitrla....VdpeyrgkGiGraLlea.....a 49
                    ++++V + +g++v +i++++++ e+  +     Vdp+  g+G+G++L++      +
      CTQ29747.1  8 NKFYVNDAQGNQVAEIVFVPTG-EHLSIIehtdVDPSLKGQGVGKQLVAKvvekmR 62
                    6789877779999999999987.3333334555***************85343321 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.6e-06    0.0047      22      57 ..      33      68 ..      11      83 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.6e-06
                SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-E CS
        FR47 22 gelgalqvlpehrrrGlgsrlvkalakeiaergktv 57
                +++    v+p+ +++G g++lv+++ +++++++ ++
  CTQ29747.1 33 SIIEHTDVDPSLKGQGVGKQLVAKVVEKMRQEQRKI 68
                45666789***********************87765 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.8e-06    0.0085      80     116 ..      39      75 ..      31      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.8e-06
                     EE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--SS CS
  Acetyltransf_9  80 avapehrgrgvlskLlaraleemreegqplsllfPss 116
                      v+p  +g+gv ++L+a+++e+mr+e+ +++ l P++
      CTQ29747.1  39 DVDPSLKGQGVGKQLVAKVVEKMRQEQRKIIPLCPFA 75 
                     589999*****************************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 734.13
//
Query:       CTQ29748.1  [L=76]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-28   96.6   0.1    7.2e-28   96.5   0.1    1.0  1  Fer4_19   Divergent 4Fe-4S mono-cluster


Domain annotation for each model (and alignments):
>> Fer4_19  Divergent 4Fe-4S mono-cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.1     4e-32   7.2e-28       1      64 []      13      76 .]      13      76 .] 0.98

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 4e-32
     Fer4_19  1 yegeeitiednrelCihsgnCvkglpevFdpkrkpwikpdeasteeiievverCPSGALsyvek 64
                y+ge+i++++n+++C+hsgnCv+g+ ++F++krkpwi pde +++++++v+++CPSGAL+y +k
  CTQ29748.1 13 YTGEKIDVYFNTAICQHSGNCVRGSAKLFNLKRKPWIIPDEVDVATVVNVIDTCPSGALQYRHK 76
                89***********************************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 685.71
//
Query:       CTQ29749.1  [L=90]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-19   67.9  10.2      1e-18   67.5  10.2    1.2  1  Ytca      Uncharacterised protein family


Domain annotation for each model (and alignments):
>> Ytca  Uncharacterised protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5  10.2   5.8e-23     1e-18       1      62 []      25      88 ..      25      88 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 5.8e-23
        Ytca  1 aPsidilGsyFPaWllClaiaiaLtlvvrlvlvrlkl..eleplvlvYpclviflavllWlilF 62
                +P i++lG++FP+W++Cl+ +++L+++++++++r  +  + +plv +Y +l++++a+llW+++F
  CTQ29749.1 25 SPEIPVLGAAFPGWFFCLLGGAFLLIPCHILITRKGWqpRFSPLVFSYVALMFLFATLLWFLFF 88
                7**********************************88668***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 736.33
//
Query:       CTQ29750.1  [L=341]
Description: membrane fusion protein of efflux pump [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-18   67.1   2.4    1.9e-12   47.8   0.1    2.9  2  HlyD_3           HlyD family secretion protein
    1.2e-16   60.2   1.2    2.9e-14   52.6   0.0    3.0  3  Biotin_lipoyl_2  Biotin-lipoyl like
    2.7e-15   56.2   2.3    2.8e-13   49.6   2.3    2.5  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    0.00046   20.0   0.0    0.00091   19.1   0.0    1.7  1  HlyD             HlyD membrane-fusion protein of T1SS
     0.0016   18.2   0.0        2.7    7.9   0.0    2.8  3  Biotin_lipoyl    Biotin-requiring enzyme
  ------ inclusion threshold ------
       0.12   11.1   0.0        1.7    7.3   0.0    2.0  2  HlyD_2           HlyD family secretion protein
       0.19   11.7   1.8       0.36   10.9   0.0    2.2  2  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP


Domain annotation for each model (and alignments):
>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   1.2e-06    0.0031       5      85 ..      54     135 ..      50     147 .. 0.77
   2 !   47.8   0.1   7.5e-16   1.9e-12       2      85 ..     211     293 ..     210     332 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.2e-06
      HlyD_3   5 pvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsik..kkgqkvtlkldqgsdytlkgkierisptvdaktg 85 
                  v+G++ve++++ ++ v +gd l++i p + +++ +  + a+l +++   +  + t+k++ ++ +++ + +er  + v+++t+
  CTQ29750.1  54 EVSGRIVEMPIRDNQRVKKGDLLFRIDP-RPYQAMLDDAKARLTTLDaqIMLTQRTIKAQEYNAQSVAAAVERARALVKQTTS 135
                 79************************96.666666666666666665444555667777789999999999999988877555 PP

  == domain 2  score: 47.8 bits;  conditional E-value: 7.5e-16
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktg 85 
                 +rAp+ Gvvv+l+ ++g++ +a +++++++++d++ v a   ++dl+ ++ +g+++++++  ++++t +g ++++++ v +++g
  CTQ29750.1 211 VRAPFNGVVVALKTTVGQYASALKPVFTLLDDDRWYVIANFRETDLNNVR-PGVAARITVMTNHNRTFNGVVDSVGSGVLPEGG 293
                 9************************************************8.*********99999************9987665 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   1.1e-17   2.9e-14       3      49 ..      49      95 ..      47      96 .. 0.94
   2 ?   -2.9   0.5       2.4   6.3e+03      37      39 ..     170     172 ..     154     182 .. 0.53
   3 !    5.3   0.0    0.0068        18       4      24 ..     210     230 ..     207     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 1.1e-17
  Biotin_lipoyl_2  3 vsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaql 49
                     + + + vsGr+++  ++d+qrVk+Gd+L+++D+r +q+ l+ a+a l
       CTQ29750.1 49 IDVVPEVSGRIVEMPIRDNQRVKKGDLLFRIDPRPYQAMLDDAKARL 95
                     567799**************************************987 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.4
  Biotin_lipoyl_2  37 alq 39 
                      a++
       CTQ29750.1 170 ATL 172
                      233 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0068
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrV 24 
                      ++ ap++G+V++l  + Gq+ 
       CTQ29750.1 210 EVRAPFNGVVVALKTTVGQYA 230
                      699****************86 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   2.3   1.1e-16   2.8e-13      19     187 ..      48     287 ..      42     292 .. 0.80

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 1.1e-16
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXX............................................. CS
    HlyD_D23  19 larvsarveGwveklyvnatgdkVkkGqpLael....yspelvaaqeeyllalk............................................. 68 
                 + +v ++v+G++ ++ ++   ++VkkG+ L+++    y   l +a++ + +  +                                             
  CTQ29750.1  48 TIDVVPEVSGRIVEMPIR-DNQRVKKGDLLFRIdprpYQAMLDDAKARLTTLDAqimltqrtikaqeynaqsvaaaveraralvkqttstrirleplvp 145
                 5678999***********.99***********9444455666666666666666999999999999999888888888888888888888888888888 PP

                 .............XXXXXXXX............XXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  69 .............akkklkkke...........lleaarerLrllgvs......eeqiaelektgkvqktvtvkapisGvVteknvreGqyvqpgdtlf 137
                              +                   ll+a ++   + gv+      +  +a+++  +   + ++v+ap++GvV++++ + Gqy+++ +++f
  CTQ29750.1 146 qgfasqedldqarT-------AekaaraeleatLLQAKQASAAVTGVDamvaqrAGVLAQIALAELHLEFTEVRAPFNGVVVALKTTVGQYASALKPVF 237
                 88877766654441.......0344456688885555555555555541111114568899999999999***************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 138 tiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiypt 187
                 t+ d ++ +v+a+  e++l++v++g ++++tv    ++tf+G vd +   
  CTQ29750.1 238 TLLDDDRWYVIANFRETDLNNVRPGVAARITVMTNHNRTFNGVVDSVGSG 287
                 *********************************************99765 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   3.5e-07   0.00091      12      64 ..      35     327 ..      16     340 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 3.5e-07
                 E.................................................................................................. CS
                 x.................................................................................................. RF
        HlyD  12 a.................................................................................................. 12 
                 +                                                                                                  
  CTQ29750.1  35 Tspetndayvyadtidvvpevsgrivempirdnqrvkkgdllfridprpyqamlddakarlttldaqimltqrtikaqeynaqsvaaaveraralvkqt 133
                 055555555555555555555555555555555555555555555555555555555555666666666666666666666666666666666666666 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  CTQ29750.1 134 tstrirleplvpqgfasqedldqartaekaaraeleatllqakqasaavtgvdamvaqragvlaqialaelhleftevrapfngvvvalkttvgqyasa 232
                 666666666666666666777777777777777777777777777777777777777777888888888888888888888888888888899999999 PP

                 ....................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSB..........................EEEEEEEEEEEETT CS
                 ....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........................xxxxxxxxxxxxxx RF
        HlyD  13 ....................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispd..........................rvpvrvvvekaqgp 64 
                                     etdl++vr+g ++ +++   ++++  +f gvV++++ +                          r+pv++ v + +  
  CTQ29750.1 233 lkpvftlldddrwyvianfrETDLNNVRPGVAARITVMT-NHNR--TFNGVVDSVGSGvlpeggsvieglpliqksinwvhvsqRFPVKIAVSDPDPE 327
                 99999999999999999999****************875.5555..************9999999999999999999999999999999999887777 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0011       2.7      44      73 .]      50      79 ..      48      79 .. 0.91
   2 ?   -3.0   0.0       2.6   6.7e+03      46      57 ..     189     200 ..     187     203 .. 0.81
   3 !    7.3   0.0    0.0016       4.1      43      72 ..     209     238 ..     207     239 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0011
                   EEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl 44 eieapkaGvvkeilvkeGdtvevgdllaki 73
                   ++  +++G+++e  + +++ v+ gdll++i
     CTQ29750.1 50 DVVPEVSGRIVEMPIRDNQRVKKGDLLFRI 79
                   677789*********************997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.6
                    EBSSSEEEEEES CS
  Biotin_lipoyl  46 eapkaGvvkeil 57 
                     a+ aGv+++i 
     CTQ29750.1 189 VAQRAGVLAQIA 200
                    68999**99996 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0016
                    EEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl  43 meieapkaGvvkeilvkeGdtvevgdllak 72 
                    +e+ ap +Gvv+ ++  +G+  ++ +++++
     CTQ29750.1 209 TEVRAPFNGVVVALKTTVGQYASALKPVFT 238
                    699*****************9988888776 PP

>> HlyD_2  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.035        91      74     120 ..      59     108 ..      19     135 .. 0.70
   2 ?    7.3   0.0   0.00065       1.7     257     302 ..     234     282 ..     223     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.035
      HlyD_2  74 ivkyfvkeGdkvkkgkkvaeiqks...eadeklkekletlnerikeienn 120
                 iv+  + +  +vkkg+ ++ i       + ++ k++l+tl+ +i   +  
  CTQ29750.1  59 IVEMPIRDNQRVKKGDLLFRIDPRpyqAMLDDAKARLTTLDAQIMLTQRT 108
                 56667788888888888888876511134456677788888888665554 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00065
      HlyD_2 257 dpifkivnnqkwYlvtlvekeevkslkegkkvkvkvddee...inakvy 302
                 +p+f + ++  wY+++   + ++++++ g +  + v  ++   +n++v 
  CTQ29750.1 234 KPVFTLLDDDRWYVIANFRETDLNNVRPGVAARITVMTNHnrtFNGVVD 282
                 699**************************98777664433234777775 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.4      0.56   1.4e+03      22      45 ..      88     111 ..      85     144 .. 0.51
   2 ?   10.9   0.0   0.00014      0.36      27     116 ..     190     285 ..     152     303 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.56
  Baculo_PEP_C  22 Lnairlqnvqilaqlatlldaiet 45 
                   L++ ++ ++++ aq+  +  +i+ 
    CTQ29750.1  88 LDDAKARLTTLDAQIMLTQRTIKA 111
                   444444444444444444444433 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00014
  Baculo_PEP_C  27 lqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq........dtlrneLtnlnsiltnLlssvtNinstLnnllqal 115
                   +q + +laq+a  l++++ +++++ + ++ ++ +l+t + + +++L+     l         +  +++L+n+   ++   + +tN n t n+++ ++
    CTQ29750.1 190 AQRAGVLAQIA--LAELHLEFTEVRAPFNGVVVALKTTVGQYASALKPVFTLLDddrwyviaNFRETDLNNVRPGVAARITVMTNHNRTFNGVVDSV 284
                   55555555554..3445555555555555555555555555555555555555544444443455689**************************999 PP

  Baculo_PEP_C 116 n 116
                    
    CTQ29750.1 285 G 285
                   6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2486.40
//
Query:       CTQ29751.1  [L=645]
Description: putative enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-79  267.8  50.4    2.4e-79  267.6  50.4    1.0  1  FUSC         Fusaric acid resistance protein family
    3.9e-07   30.2  15.4    3.9e-07   30.2  15.4    2.6  2  FUSC_2       Fusaric acid resistance protein-like
     0.0012   17.8   1.4     0.0012   17.8   1.4    2.3  2  ALMT         Aluminium activated malate transporter
  ------ inclusion threshold ------
      0.045   13.9   1.9        0.9    9.6   1.1    2.3  2  Flagellin_N  Bacterial flagellin N-terminal helical region


Domain annotation for each model (and alignments):
>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.6  50.4   5.5e-83   2.4e-79       2     655 ..      19     640 ..      18     642 .. 0.97

  Alignments for each domain:
  == domain 1  score: 267.6 bits;  conditional E-value: 5.5e-83
        FUSC   2 wlFalKtllAalLALyiAlrleLpqPywAmtTVfiVsqPlsGavlsKslyRllGTllGaaaavllvalfvqapllfllalalWiglclalslldrnfrs 100
                 + ++l+++l++++ +++ + l++p  ++A++ Vf+VsqP++ ++   s++ ++ +++ +  ++l++ +++++pl+ l+a  + ++++l+l+ ++ +   
  CTQ29751.1  19 ASYTLRLTLSCAVLITLFMTLQIPFLAVALIVVFYVSQPNVLMIKLVSVVFFVTVTVALGGVLLIIKWTYDYPLIRLAASVALFFCALYLMRVLGKLGL 117
                 679************************************************************************************************ PP

        FUSC 101 YafvLAGYTaalialpava.dPetvFdiAvaRvseIvlGIvCaalVsalvfPrsvapalrarlrallrdalalaaaalageegaeareaararlaadil 198
                  +fv+A   ++  ++p+++ + e ++++ ++ +  I  +I++++lV+a+++++ ++++++arl+++l+++++ +aa  a+++ +        + aa+++
  CTQ29751.1 118 AFFVVALAVIYAQTFPSMTsQSEILVRLLLWLWVAINTAILVTLLVNACFQQAFPGNQFKARLAGMLHEVARRLAAPDAEAPPTFG------ETAAQFN 210
                 ***********************************************************************************999......8****** PP

        FUSC 199 alealrsqaayesprirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaaleaaaaaealeaalaalrarlralrraleada 297
                 +l++l++qa+  +p+i+a+ +a+r+ l+++l++++l+  l+   a+ +++++     l++ + +l++   a ++e  ++a+++l+   r ++ra     
  CTQ29751.1 211 QLQSLFAQASRATPEIAADPQAWRSRLAATLRCYQLAALLQADEADSDDRQQ-----LSQAVLQLKN---ALSEEPFDGAIPPLTLSGRGVNRAVL--- 298
                 *************************************999999999888666.....99********...99*************99999988766... PP

        FUSC 298 dtaalllarlaellaelaqllaslraleaaiaaarraerlarhrdhlaallnglraalaillaglfWiatgWpsGatavllaaivcslfatldnPapal 396
                        +++a++l++laq   +  al+++ ++ +++  +++ + ++a+l+++l+++la+l++++f++a +W++ +t++l ++iv      l  +++ +
  CTQ29751.1 299 -------QEMATTLQRLAQ--GEPVALPQGEVE-KAPLLAPDAWRNPAYLHFALKTLLATLICYVFYTAADWQGLHTIMLSCVIVA--QPGLGATMQKT 385
                 .......************..999********9.999999**********************************************..*********** PP

        FUSC 397 lqfligtllavlaallllfvvlPhvdg.fplLvlvlapplllgglllarprlagiglglavffalllapqnamtydfatflnsalAlllGvllaavvfr 494
                 +  + g+lla+l+alll ++v P++d+   lL+++l++++l++++++++ r+a++g++++++fal +  + a+ ++++++ +++l++llGvl++++v+ 
  CTQ29751.1 386 WLRIGGALLASLLALLLIVFVQPWTDSlTGLLAMSLPVLALAAWIAAGSERIAYAGIQIGFTFALAFLSWFAPLTNLTELRDRVLGILLGVLVSSIVHL 484
                 *************************************************************************************************** PP

        FUSC 495 lirpvsaewlarrllralrrdlaraasrpaaeaes.rfesrmldrlaqllprla.....aapparrellrdglaalrlgravlrLrraleralaaeara 587
                 +++p s++ + ++ l+al+r+la+++++p ++     ++ +++d  a++++ +a      a+p+ ++  + + a+l+ ++++ rL++       +  +a
  CTQ29751.1 485 YLWPDSEAPQLKTRLAALYRRLADCLAAPKEAVPLaPLLVAFTDSEALIHRVRAeplgtYAHPWPQAKGWPMRATLAQAEEIARLSE-----GYRLNAA 578
                 ********************************8877***************999999999***************************.....6788999 PP

        FUSC 588 aldavlaalafrapaaarsarrlrapaaalraldaalaalaaseatsa...lrralaaLvrlrlalldkas 655
                 + d +la++a         ++ +r+++++ +++ a  ++l+a+ +++    l++alaaL ++  +   +++
  CTQ29751.1 579 PGDPTLARCA---------EQLRRYAERIEQEATAPGEQLTADLTNPFgpaLAAALAALPDWGPTPIATEQ 640
                 9999999999.........8888999***************999999999999999999999888777766 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3  20.8      0.51   2.3e+03       4     114 ..      34     145 ..      28     163 .. 0.55
   2 !   30.2  15.4   8.7e-11   3.9e-07       2     126 ..     351     481 ..     346     485 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.51
      FUSC_2   4 liaellglwrgeWalitaaivlsptlgasltravqRilGtvlGavlallll.yllpgn.lalallvfllvfliafflkrny..alafifltllalllys 98 
                  ++ +l+ + +  ali+++ v +p++       v  ++ +++++   ll++ +  +++ + l ++ + l+f++ ++++     +laf+++ l ++  ++
  CTQ29751.1  34 TLFMTLQIPFLAVALIVVFYVSQPNVLMIKLVSVVFFVTVTVALGGVLLIIkWTYDYPlIRL-AASVALFFCALYLMRVLGklGLAFFVVALAVI-YAQ 130
                 3444566688889999999999**99888777777777666666666665544555563444.45555566666666644411444444333333.333 PP

      FUSC_2  99 laagsgnpieialhRl 114
                    ++++++e +l+Rl
  CTQ29751.1 131 TFPSMTSQSE-ILVRL 145
                 3335555555.33333 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 8.7e-11
      FUSC_2   2 avliaellglwrgeWalitaaivlsptlgasltravqRilGtvlGavlallllyllpgn....lalallvfllvfliafflkrn....yalafifltll 92 
                 +++++ + +++ ++ ++++++iv +p lga++++++ Ri G +l+++lalll+++++       +l+++ + ++ l+a++ + +    ya+++i +t+ 
  CTQ29751.1 351 CYVFYTAADWQGLHTIMLSCVIVAQPGLGATMQKTWLRIGGALLASLLALLLIVFVQPWtdslTGLLAMSLPVLALAAWIAAGSeriaYAGIQIGFTFA 449
                 5677777888999**************************************998888633453333333333344445555333344589999999998 PP

      FUSC_2  93 alllyslaagsgnpieialhRlldvliGiliall 126
                 + +l   a + +n    +  R+l +l+G+l++ +
  CTQ29751.1 450 LAFLSWFA-PLTNLT-ELRDRVLGILLGVLVSSI 481
                 88888886.455554.4999**********9865 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3     0.087   3.9e+02      96     119 ..     115     138 ..     103     169 .. 0.81
   2 !   17.8   1.4   2.6e-07    0.0012      11     193 ..     338     510 ..     330     517 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.087
        ALMT  96 igvsvFiiaalatflrliPaikar 119
                 +g++ F++a ++ +++ +P++ ++
  CTQ29751.1 115 LGLAFFVVALAVIYAQTFPSMTSQ 138
                 56788***************9884 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.6e-07
        ALMT  11 vvfslkvGlaltLvsllyflrplykelgknavWailTVvvvlefsvGATlskGlnRalaTliAGglalgvselasssgkileeivigvsvFiiaalatf 109
                 + f+lk  l+ tL+  +++  + +++l       +l  v+v +   GAT++k   R  + l+A  lal+     +   + l   ++++s  ++a + ++
  CTQ29751.1 338 LHFALKT-LLATLICYVFYTAADWQGLHTI----MLSCVIVAQPGLGATMQKTWLRIGGALLASLLALLLIVFVQPWTDSLT-GLLAMSLPVLALA-AW 429
                 5677775.5567777777777776666432....4678999***************************99888888887444.4555666555544.34 PP

        ALMT 110 lrliPaikarYdYgvlvflLTFclvvvsgyrtdevielAvkRfltiaiGaliclivsifvfPiwaGedLhklvaknleklaksl 193
                 +    a  +r  Y+   + +TF+l  +s +   + +    +R+l i++G+l++ iv + ++P     +L   +a    +la++l
  CTQ29751.1 430 IA---AGSERIAYAGIQIGFTFALAFLSWFAPLTNLTELRDRVLGILLGVLVSSIVHLYLWPDSEAPQLKTRLAALYRRLADCL 510
                 43...4456889******************9998888889********************997766777666666666666665 PP

>> Flagellin_N  Bacterial flagellin N-terminal helical region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.1    0.0002       0.9      52     120 ..     207     275 ..     203     282 .. 0.94
   2 ?    2.3   0.0     0.037   1.7e+02      24      59 ..     565     600 ..     555     606 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0002
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTTS-SHHHHHHHHHHHHHHHHH CS
  Flagellin_N  52 sqiaglsqlvrnnslgisrlqtaqgalselsdilqrlkelavaasndsnsdedrqslqaelqqLtdeln 120
                  +q ++l++l  ++s ++  +++  +a  +  +++ r  +la+  + d+++++drq+l++++ qL+++l 
   CTQ29751.1 207 AQFNQLQSLFAQASRATPEIAADPQAWRSRLAATLRCYQLAALLQADEADSDDRQQLSQAVLQLKNALS 275
                  7899*************************************************************9996 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.037
                  HHHHHTTSBTTSSTTS-HHHHHHHHHHHHHHHHHHH CS
  Flagellin_N  24 aqeelstGlridsalddaaglaisvslrsqiaglsq 59 
                   + +ls G r + a  d+  +  +++lr+ +++++q
   CTQ29751.1 565 EIARLSEGYRLNAAPGDPTLARCAEQLRRYAERIEQ 600
                  4679***************************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1189  (0.0663171); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 4280.93
//
Query:       CTQ29752.1  [L=482]
Description: outer membrane factor of efflux pump [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-34  119.7  30.3    4.1e-20   72.4  11.0    2.1  2  OEP       Outer membrane efflux protein


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4  11.0   2.3e-24   4.1e-20       2     188 .]      71     268 ..      70     268 .. 0.91
   2 !   53.4  11.3   1.5e-18   2.7e-14       8     187 ..     297     475 ..     294     476 .. 0.91

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 2.3e-24
         OEP   2 dellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgtt.............svgltlsqplfdggkrrarvka 87 
                 + l+++al+n+p ++aa+++i +++ ++++a++++  + ++ ++ ++    ++++  +++ + +             +vg+++++++  +g+ rarv+a
  CTQ29752.1  71 NMLINRALQNSPTMQAARLRISQSQSTVELARSAMGLQATAVAAQNR--LRITDKSFSWPYSYSlpvdkngpwytlnTVGVGAQLNIDLWGADRARVAA 167
                 6799*****************************95555555555544..44444444444444466********************************* PP

         OEP  88 akaqleaaeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyl 186
                 a  ++ a  a+ +  ++++++ vaq+y+ ++++ + ++l++e+   a+  +e+ e r + Gl + +dv++aq+++l ar+++++ae  l + r  L++l
  CTQ29752.1 168 AIGEKNARLAETAGIELDIASSVAQLYFAMQATFQKIALLQELEGIARFSVEAHEHRTRRGLEDSVDVANAQAEQLAARQQIISAEGMLTQYRETLRAL 266
                 **************************************************************************************************9 PP

         OEP 187 lg 188
                 +g
  CTQ29752.1 267 IG 268
                 98 PP

  == domain 2  score: 53.4 bits;  conditional E-value: 1.5e-18
         OEP   8 alennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqleqarqql 106
                  l+++pdl+a++  + a+  +++aaka+f+P +++ + +gy+  +  + + ++ ++  ++  +l +p+fdgg+ +a++++ ++ + +   q++qa+++ 
  CTQ29752.1 297 LLARRPDLQALRGYVTASLSQVDAAKAAFYPHFDIKAFWGYNALSVGDLFKSSFQQI-NLLPGLYLPIFDGGRLNANLQSVRTASNILIKQYNQAVLDA 394
                 5789*****************************************998887776665.9999************************************* PP

         OEP 107 rlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyll 187
                   +va +  ql  +++q++l++  +++a+ + + a+a y+ Gl s     +a++ +l +++ l+  e+q+  +   L ++l
  CTQ29752.1 395 VRDVAISSSQLNDLNQQRALQQLKVTAAQTTTDSARAHYQRGLLSRYAAEEARRAVLAQQLLLLDIEAQRLSTDITLIKAL 475
                 **********************************************76777777788888888877777777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3554.97
//
Query:       CTQ29753.1  [L=82]
Description: hypothetical protein CH1034_280358 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 697.46
//
Query:       CTQ29754.1  [L=99]
Description: hypothetical protein CH1034_280359 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-45  154.5   0.0    1.6e-45  154.4   0.0    1.0  1  DUF1889   Domain of unknown function (DUF1889)
  ------ inclusion threshold ------
       0.14   11.9   0.0       0.16   11.7   0.0    1.2  1  FMN_red   NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> DUF1889  Domain of unknown function (DUF1889)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.0   1.8e-49   1.6e-45      21     119 .]       1      99 []       1      99 [] 1.00

  Alignments for each domain:
  == domain 1  score: 154.4 bits;  conditional E-value: 1.8e-49
     DUF1889  21 mpavidkaldfigamdvsaptpssmnestakgifkylkelgvpasaaditaradlegwnpgftekmvgwakkmesgeriviknpeyfstymqeelkalv 119
                 mpavidkaldfig m+ s p p sm+estakgi+kylkelgvpa+ ad++ar +++gw  gft+k+  wa ++ +ger vik pe+fstym+eel+alv
  CTQ29754.1   1 MPAVIDKALDFIGGMNTSEPVPQSMDESTAKGILKYLKELGVPATPADVAARGQQQGWSAGFTDKVAEWAERVAAGERLVIKHPEFFSTYMREELRALV 99 
                 9************************************************************************************************98 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.7e-05      0.16      20      87 ..      30      90 ..       7      90 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.7e-05
                HHHHHCCT-T.T-CEEEEETTTS.--..---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTTCE CS
     FMN_red 20 aewaaealkeagaevelidladlilpcalcdkdlesegqtsddvaellekiaaadaliivtPeYngsy 87
                a+ +++ lke g+ ++  d+a    +     +++  + +  d+vae+ e++aa + l+i  Pe++ +y
  CTQ29754.1 30 AKGILKYLKELGVPATPADVAAR--G--Q-QQGW--SAGFTDKVAEWAERVAAGERLVIKHPEFFSTY 90
                55556666666666666666663..3..1.2344..35679***********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 754.19
//
Query:       CTQ29755.1  [L=517]
Description: Amino acid/peptide transporter (Peptide:H+ symporter) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-63  213.7  27.2    5.1e-63  213.3  24.7    2.5  2  PTR2      POT family
      2e-21   76.3  69.6    2.6e-17   62.8  41.9    2.2  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.87    7.7  13.7      0.089   11.0   5.2    2.2  2  YfhO      Bacterial membrane protein YfhO


Domain annotation for each model (and alignments):
>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.3  24.7   8.5e-67   5.1e-63       2     383 ..      91     465 ..      90     476 .. 0.83
   2 ?   -1.7   0.0      0.16   9.8e+02     245     274 ..     472     500 ..     464     507 .. 0.74

  Alignments for each domain:
  == domain 1  score: 213.3 bits;  conditional E-value: 8.5e-67
                 HHHHHHHHHHHHHHHHCCCCT.TTTSS--S--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PTR2   2 ktIllgsiiyaiGhvvlalsa.ipslksaesagvrvallfigLalIalGtGgiKpnvSafgadqfeekdprersrfFsiFyfsiNvGSLlsliitpylq 99 
                 +++ +gsi++a+Gh+ +alsa   +            l+figL+ I+lG G++K ++S +++ +++++d r++++ Fs+Fy++iN+GS+++++i ++l 
  CTQ29755.1  91 RAVWYGSILIALGHLSIALSAwLGN---D--------LFFIGLMFIVLGSGLFKTCISVMVGTLYKKGDARRDGG-FSLFYMGINIGSFIAPLISGWLI 177
                 6899***************995444...3........9*************************************.*********************** PP

                 CTT-HHHHHHHHHHHHHHHHHHHHCTT....TS-EE---.---SHHHHCCCHSHHHHHCCC........HHHHHHHHHHHHHSHHHHHH---HHCCHCH CS
        PTR2 100 envgyplgFgipavlmiiallvFllGs....rlykkkpp.kgnvltkvfkvllvaaknkvk........kirssagkkklhwldkakeldkalsileiv 185
                 + +g+++gFgi +++m++al++F +      + y      ++   + v+k+  v a+            +  s  ++ +++    +      + +  i+
  CTQ29755.1 178 KSHGWHWGFGIGGIGMLVALIIFRVFAvpsmKRYDAEVGlDSTWNSPVAKKNGVGAWLLALalgvavlvTLISLGTIVINPVAVAS------VLVYVIA 270
                 *********************98653311124454444435555555555555555554447665554322333333333333333......3333444 PP

                 HHHHHHHH-....HHTHHCHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHTST-BE.SSCB--GGGGHHHHHHHHHHHHHHHHHCTHHHHHHTTSS CS
        PTR2 186 vegivfnim....tkkkveevkrllrvvplflpliifwalyaQmgttlvlqartmnrki.gsfeippaqlqvlnailillliPifdklvypllrkltlg 279
                 +++ +  i+       + +e+ rll  ++l +++ +fw  ++Q +t+++l+a+  + ++ g feip+ ++q++na++i+ll+P+f + +  l+rk+  +
  CTQ29755.1 271 ASVALYFIWlfvfAGLNRKERARLLVCFILLVSAAFFWSAFEQKPTSFNLFANDYTNRMiGDFEIPAVWFQSINALFIILLAPVFSWAWPALARKNV-R 368
                 4444444556666788999999******************************66666666***********************************88.* PP

                 CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHT----------TCCCHHHHHHHHHHHHHCCCHHHHHHCTSS-TTTCCCCHHHHHHHHHHHHHHHHH CS
        PTR2 280 ltslkkiavGlflaslafaiaaivelkraktlpelpeaeevqisvlwlipqylligiselfasiggleffykeapksmkslitglflltnalgnflssv 378
                 + s++k+ +G++ a+++f ++ + +  ++  +        + +s lwl+ + l+++++el++s+ gl++++ +ap++m+++++gl++  +algn+ +++
  CTQ29755.1 369 PGSMTKFVIGILCAAAGFGLMMLAAQNVLSNG-------GAGVSPLWLVGSILMLTLGELCLSPIGLATMTLLAPERMRGQMMGLWFCASALGNLAAGL 460
                 ******************99999999999998.......568*****************************************************9998 PP

                 HHHHH CS
        PTR2 379 latlv 383
                 +   v
  CTQ29755.1 461 IGGHV 465
                 86655 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.16
                 --GGGGHHHHHHHHHHHHHHHHHCTHHHHH CS
        PTR2 245 ippaqlqvlnailillliPifdklvypllr 274
                 + p+++    +i++l+++++++ l++p+ r
  CTQ29755.1 472 LLPDLFAR-CSIALLICAAVLAVLIVPVRR 500
                 55555544.37999***********99876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8  41.9   4.4e-21   2.6e-17      10     294 ..      32     309 ..      23     323 .. 0.74
   2 !   19.2  19.8     8e-08   0.00048      39     167 ..     342     497 ..     336     516 .. 0.66

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 4.4e-21
       MFS_1  10 larsilgpalplalaed.....lgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalg.lllll..fasslwlllvlrvlqGlga 99 
                 ++++ + p+l l++a +      g++   ++ +++++a  + +a+lp+G+l+d+ +G  r ++ g +l alg l ++l  +  +  l++++ ++  lg+
  CTQ29755.1  32 FSFYGIRPLLILFMAATvydggMGLARENASAIVGIFAGSMYLAALPGGWLADNwLGQQRAVWYGSILIALGhLSIALsaWLGND-LFFIGLMFIVLGS 129
                 55555556665555444444446788888999**********************77****************7777775542443.5999999999*** PP

       MFS_1 100 galfpagaaliadwfpk..eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpapl 196
                 g++ + + +++  +++k   +r  +++l+++g+++G+ ++pl++g+l+ s gW++ f i +i +l+a+++f ++ + + ++   + + +      + + 
  CTQ29755.1 130 GLFKTCISVMVGTLYKKgdARRDGGFSLFYMGINIGSFIAPLISGWLIKSHGWHWGFGIGGIGMLVALIIFRVFAVPSMKRYDAEVGLDS----TWNSP 224
                 *****************777***********************************************99866666555555555555555....22222 PP

       MFS_1 197 vpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglall 294
                 v      +k+  + ++l+al+l+ +++ +l +l ++ ++ v   s +l  +  +a++ ++ +i  ++++ l ++   +r++ll +++ll++a+++   
  CTQ29755.1 225 VA-----KKNG-VGAWLLALALGVAVLVTLISLGTIVINPVAVAS-VLVYV--IAASVALYFIWLFVFAGLNRK---ERARLLVCFILLVSAAFFW-S 309
                 22.....2333.224666666666677777777777756666666.33333..666666666667777777777...7777777777766666554.3 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 8e-08
       MFS_1  39 tlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..f.....a.....ss.....lw.lllvlrvlqGlgagalfpagaaliadwfpkeer 119
                 ++ al+ +++++++++    + r+ v   +++ f++g+l+++  f     a     s+     ++ +l+ + ++  lg+ +l p+g+a ++ ++p++ r
  CTQ29755.1 342 SINALFIILLAPVFSWAWPALARKNVRPGSMTKFVIGILCAAagFglmmlAaqnvlSNggagvSPlWLVGSILMLTLGELCLSPIGLATMTLLAPERMR 440
                 566666666666666665555444455555555555533333343222332333442255556665699999999************************ PP

       MFS_1 120 graigllsagfslGailgpllgglla.sslg........Wravfyilaivsllafvl 167
                 g+++gl+  +++lG + + l+gg +  ++l+         + + +i+a+v+++++v 
  CTQ29755.1 441 GQMMGLWFCASALGNLAAGLIGGHVKaDQLSllpdlfarCSIALLICAAVLAVLIVP 497
                 ******************9****8877888886666666666677777777776552 PP

>> YfhO  Bacterial membrane protein YfhO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   1.3     0.011        67     336     437 ..      29     129 ..      24     147 .. 0.71
   2 ?   11.0   5.2   1.5e-05     0.089     187     272 ..     267     352 ..     265     363 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.011
        YfhO 336 vgfpyRfsfils..flllllaaealkelkqlkklkllaailllvlllliilllknkks.ynfl.tssqlllgllllllalllllllllkkkkkklvlll 430
                 +    Rfsf ++  +l+l++aa++++  + l  ++ ++ai+ ++++ ++ + l  +   +n+l +++++++g +l+ l+ l +  l ++  +  +++ l
  CTQ29755.1  29 W---ERFSFYGIrpLLILFMAATVYDGGMGL-ARENASAIVGIFAGSMYLAALPGGWLaDNWLgQQRAVWYGSILIALGHLSIA-LSAWLGNDLFFIGL 122
                 4...799998874478888888888888888.6777777777777777777666655423343256677788888888888887.56699999999999 PP

        YfhO 431 lllvlvl 437
                 +++vl  
  CTQ29755.1 123 MFIVLGS 129
                 9988755 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 1.5e-05
        YfhO 187 YmialFlvlYfllrli.kfkkikqtlkqllrfiissllagllsavlllPtvlgllsskrasaeatisltfdinpldllsklligtfd 272
                 Y+ia  ++lYf+++++    + k++++ l++fi+ +  a++ sa+   Pt ++l+ ++ ++  + + +  +  +++ ++ l+i    
  CTQ29755.1 267 YVIAASVALYFIWLFVfAGLNRKERARLLVCFILLVSAAFFWSAFEQKPTSFNLFANDYTNR-MIGDFEIPAVWFQSINALFIILLA 352
                 8899999********9555**************************************99888.799999999999999999997555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1044  (0.0582297); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.49
# Mc/sec: 3200.49
//
Query:       CTQ29756.1  [L=140]
Description: arsenate reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-18   66.8   0.0    1.5e-18   66.6   0.0    1.1  1  ArsC          ArsC family
     0.0028   17.8   0.0       0.01   16.0   0.0    1.9  2  PGM_PMM_IV    Phosphoglucomutase/phosphomannomutase, C-termin
  ------ inclusion threshold ------
       0.01   16.0   0.0      0.023   14.9   0.0    1.8  1  Glutaredoxin  Glutaredoxin
      0.042   13.7   0.0      0.058   13.2   0.0    1.2  1  MEDS          MEDS: MEthanogen/methylotroph, DcmR Sensory dom


Domain annotation for each model (and alignments):
>> ArsC  ArsC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0   3.3e-22   1.5e-18       1      64 []       6     114 ..       6     114 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 3.3e-22
                 EE-TT.............................................GCB-TTSHHHHHCTCCCTTSBHHHHHHHHHH-GGGB-S-EEEESSEEEE CS
                 xxxxx.............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ArsC   1 Ygspn.............................................ellskrgttyreLnldkedlsedellelilenpsLirRPivvdgkrlqi 54 
                 Y++p                                              +ll+k+ ++y  L+l+++++++d++++++l++p+Li+RPiv++++++++
  CTQ29756.1   6 YHNPDcgtsrntlalirnsgaeptviyyletppsgdelrqllaamgipvrALLRKNVEPYDALGLAEDRFTDDQIIDFMLQHPILINRPIVTTPQGTRL 104
                 88888889999999999999999999999999999999999999999999************************************************* PP

                 SSSCCGGGGG CS
                 xxxxxxxxxx RF
        ArsC  55 Gfneeeiraf 64 
                 ++++e ++++
  CTQ29756.1 105 CRPSEVVLEI 114
                 *****99875 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.3e-06      0.01      39      68 ..      20      49 ..      12      51 .. 0.88
   2 ?   -2.1   0.0         1   4.5e+03      33      44 ..      98     108 ..      95     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.3e-06
                E.EEEETTCCEEEEEEEES.SHHHHHHHHHH CS
  PGM_PMM_IV 39 lavRpSGTepllrvyvEak.sdeelarlaee 68
                l +R SG ep +  y+E++ s +el +l ++
  CTQ29756.1 20 L-IRNSGAEPTVIYYLETPpSGDELRQLLAA 49
                5.9**********************999876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1
                 GCCEEEE.EEEE CS
  PGM_PMM_IV  33 ledGrrlavRpS 44 
                 +  G+rl  RpS
  CTQ29756.1  98 TPQGTRL-CRPS 108
                 5679999.9*99 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   5.1e-06     0.023       1      51 [.       3      53 ..       3     100 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.1e-06
                  EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSS CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvP 51
                  ++++  p C+ ++++ +l ++ g++ ++i  ++ +   +el++l+  + +P
    CTQ29756.1  3 ITIYHNPDCGTSRNTLALIRNSGAEPTVIYYLETPPSGDELRQLLAAMGIP 53
                  79*********************************9999999999888777 PP

>> MEDS  MEDS: MEthanogen/methylotroph, DcmR Sensory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.3e-05     0.058      17      88 ..      17      85 ..       6      88 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
        MEDS 17 lvpfikaglargekvlyvasastldelrealrkagldvdaalesgqleildaeetylrgggfdpermlealr 88
                +++ i+++ a+   ++y+ ++ + delr+ l++ g++v a+l+++   + +++ + l++ +f  +++++++ 
  CTQ29756.1 17 TLALIRNSGAEPTVIYYLETPPSGDELRQLLAAMGIPVRALLRKN---VEPYDALGLAEDRFTDDQIIDFML 85
                56667777777777888888*************************...55655555******9999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1058.10
//
Query:       CTQ29757.1  [L=430]
Description: arsenite/antimonite transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.5e-151  504.7  31.2   2.9e-151  504.6  31.2    1.0  1  ArsB           Arsenical pump membrane protein
    3.2e-22   79.1  47.2    3.2e-22   79.1  47.2    2.0  2  CitMHS         Citrate transporter
     0.0062   15.6  31.7      0.022   13.8  17.0    2.8  3  Na_sulph_symp  Sodium:sulfate symporter transmembrane region
  ------ inclusion threshold ------
      0.077   13.0   0.3      0.077   13.0   0.3    2.3  2  PsaX           PsaX family


Domain annotation for each model (and alignments):
>> ArsB  Arsenical pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  504.6  31.2  6.5e-155  2.9e-151       1     421 [.       3     423 ..       3     425 .. 0.99

  Alignments for each domain:
  == domain 1  score: 504.6 bits;  conditional E-value: 6.5e-155
        ArsB   1 lavfiflltlvlviwqpknlsigwsacggavlaliagvvnfhdvltvtgivwnatlafvaiilislildnigffewaalhmakaakgygvrmfvyvsll 99 
                 la  if+ltlvlviwqp+ l igwsa+ ga lal +g v++ d+  v  ivwnat +f+a+i+isl+ld+ gffewaalh+++  +g g  +f ++ ll
  CTQ29757.1   3 LAGTIFILTLVLVIWQPRGLGIGWSAAFGAALALATGGVQVADIPVVWHIVWNATATFIAVIIISLLLDESGFFEWAALHVSRWGRGRGRLLFTWIILL 101
                 5678*********************************************************************************************** PP

        ArsB 100 gaivaalfandgaaliltpivlamvralhfneklvfpfiiasgfiadttslpfvvsnlvnivsadyfhitfidyasrmvvpylfsllasiivlylffrk 198
                 ga vaalfandgaaliltpiv+am+ral f +  ++ f++a+gfiadt+slp+vvsnlvnivsad+f i f +yas mv   l ++l+++ +l+lffrk
  CTQ29757.1 102 GAAVAALFANDGAALILTPIVIAMLRALGFSKGTMLAFVMAAGFIADTASLPLVVSNLVNIVSADFFAIGFREYASVMVPVDLAAILTTLAMLHLFFRK 200
                 *************************************************************************************************** PP

        ArsB 199 sipkrydltevkkpveaikdqnmfrlswyilgllligyfaseffsipvsvvagsiaiifliaaqkspavhtkkvvkeapwaivffsigmyvvvygvrna 297
                  ip  +d++ +k p  aikd   fr  w +l lll g+f  e + ipvs +a   a i++  a++   + t kv++ apw iv+fs+gmy+vvyg+rna
  CTQ29757.1 201 DIPPAWDMALLKAPATAIKDPATFRTGWGVLLLLLAGFFVLEPLGIPVSAIAALGAGILFAVAKRGRVINTGKVLRGAPWQIVIFSLGMYLVVYGLRNA 299
                 *****************************************************9999999999************************************ PP

        ArsB 298 gltdvlsdviqaaadqglfagtigmgfiaailssimnnlptvmidalaiagtdthgmmrealiyanvigsdlgpkitpigslatllwlhvlshkgmkis 396
                 gltd l+ v++  a++gl+a t+g g+++a lssimnn+p+v++ al+i g+ + g ++ea+iyanvig dlgpkitpigslatllwlhvl++k + i 
  CTQ29757.1 300 GLTDYLTTVLNMLAERGLWAATLGTGVLSAFLSSIMNNMPSVLVGALSIDGSAATGTIKEAMIYANVIGCDLGPKITPIGSLATLLWLHVLAQKHITIG 398
                 *************************************************************************************************** PP

        ArsB 397 wgtyfktgiiltiptllitlvglyi 421
                 wg yf+ gi +t+p ll+tl  l +
  CTQ29757.1 399 WGYYFRCGITMTLPVLLVTLAALAL 423
                 ********************98865 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1  47.2   7.2e-26   3.2e-22       1     284 [.      12     354 ..      12     368 .. 0.80
   2 ?   -1.9   3.5      0.34   1.5e+03     118     173 ..     363     422 ..     352     430 .] 0.58

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 7.2e-26
                 xxxxxxxx..xxxxxxxxxxxxxx......xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
      CitMHS   1 lvllilek..lrldvvallvlvll......vltiee....alsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvllvlltalls 86 
                 lvl+i++   l++ + a ++++l+           +    ++ +i +++++++++++ii+ +l+e+G+f++ a ++ r+++g+ + l+  ++ll a ++
  CTQ29757.1  12 LVLVIWQPrgLGIGWSAAFGAALAlatggvQ----VadipVVWHIVWNATATFIAVIIISLLLDESGFFEWAALHVSRWGRGRGRlLFTWIILLGAAVA 106
                 5899999999999999999888887655432....144567999999**************************************99999999999999 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxxx RF
      CitMHS  87 afvsndgvvlimipivlslakrlkklppl....lliplalaaniggaltpiGtpttraaarpglslpnlll...................lalllvgll 162
                 a++ ndg++li++piv+++ +   +++      ++++++++a + ++ + + +             +n++                    la++l+ l+
  CTQ29757.1 107 ALFANDGAALILTPIVIAMLRA-LGFSKGtmlaFVMAAGFIADTASLPLVVSNL------------VNIVSadffaigfreyasvmvpvdLAAILTTLA 192
                 *********************7.7888887888999999999999999999999............999999999999999888888777777777788 PP

                 xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx.......................................xxxxxxxxxxxx RF
      CitMHS 163 plvllfmfgvalalpvnap...kvkkqkaiieaiarsllpvatillla.......................................ykkveWsvlllf 219
                 +l l+f + ++ a           k+ +  i+  a++   ++++lll+                                       ++  +W+++++ 
  CTQ29757.1 193 MLHLFFRKDIPPA-----WdmaLLKAPATAIKDPATFRTGWGVLLLLLagffvleplgipvsaiaalgagilfavakrgrvintgkvLRGAPWQIVIFS 286
                 8888883333222.....233345666666666666666666666666788888888888888888899999999************************ PP

                 xxxxxxxxxxxxxxxxxxxxxxxxx..x.xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 220 aGvfllvgaleqtGilealadllga..g.gplvalalvlglial.lsafisnvavaalmapialgmapa 284
                  G+ l+v +l++ G+ ++l ++l+     g++ a +l++g++++ ls++++n++ +++ a  + g a++
  CTQ29757.1 287 LGMYLVVYGLRNAGLTDYLTTVLNMlaErGLW-AATLGTGVLSAfLSSIMNNMPSVLVGALSIDGSAAT 354
                 **************888888888556534775.557777777777**********95555555554442 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.34
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxx RF
      CitMHS 118 iplalaaniggaltpiGtpttraaarpglslpnlll.................lalllvgllplvllfmfgva 173
                  + ++++ +g  +tpiG             ++ l+l                  +++++  lp++l+ ++++a
  CTQ29757.1 363 YANVIGCDLGPKITPIGSL-----------ATLLWLhvlaqkhitigwgyyfrCGITMT--LPVLLVTLAALA 422
                 4567889999999999999...........33333333447777777777777444444..333333222333 PP

>> Na_sulph_symp  Sodium:sulfate symporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8  17.0   4.9e-06     0.022     316     419 ..      48     147 ..       4     200 .. 0.69
   2 !   11.2   1.4     3e-05      0.14     274     364 ..     229     322 ..     222     339 .. 0.85
   3 ?   -0.5   0.5      0.11     5e+02     198     235 ..     383     418 ..     329     429 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.9e-06
  Na_sulph_symp 316 vkqktaWntllllgglialakllersgliewlgnklttslsglspavaiiiilslfvlvhylfaSatAttaallpillavaqaipgappllvalll 411
                    v  +  Wn    + ++i ++ ll++sg++ew +  ++       + +++  i++l  +v  lfa   A   +l pi++a++ a+ g     ++l+ 
     CTQ29757.1  48 VVWHIVWNATATFIAVIIISLLLDESGFFEWAALHVSRWGR-GRGRLLFTWIILLGAAVAALFANDGAAL-ILTPIVIAMLRAL-GF-SKGTMLAF 139
                    344578*************************9999988777.89*********************99975.9************.76.56777777 PP

  Na_sulph_symp 412 alatslag 419
                    ++a ++++
     CTQ29757.1 140 VMAAGFIA 147
                    77766542 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3e-05
  Na_sulph_symp 274 ilfvlllllWifgeslnidattvaivvlvillllr....vldWkDivkqktaWntllllgglialakllersgliewlgnklttslsglspavai 364
                    ++++lll + +  e l+i  +++a ++  il+ +     v++    v   ++W+++++  g++ +  +l ++gl ++l  +l  + +   +a+++
     CTQ29757.1 229 GVLLLLLAGFFVLEPLGIPVSAIAALGAGILFAVAkrgrVINTG-KVLRGAPWQIVIFSLGMYLVVYGLRNAGLTDYLTTVLNMLAERGLWAATL 322
                    57889999999999999999999999999999998899966655.366789*******99**********************9999977777665 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.11
  Na_sulph_symp 198 NllllglinsilgveitwasWflaaiptgvillllvpl 235
                     ll l++++ +++++i w+ +f + i + + +ll++ l
     CTQ29757.1 383 TLLWLHVLA-QKHITIGWGYYFRCGITMTLPVLLVT-L 418
                    455555555.8999999*999999766654333332.2 PP

>> PsaX  PsaX family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   1.7e-05     0.077       7      21 ..     219     233 ..     214     240 .. 0.80
   2 ?   -3.0   0.2       1.6   7.3e+03      29      33 ..     400     404 ..     400     407 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.7e-05
                 X----HHHHHHHHHH CS
        PsaX   7 kppYpFRTgwAllLL 21 
                 k p +FRTgw +lLL
  CTQ29757.1 219 KDPATFRTGWGVLLL 233
                 67889******9987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.6
                 HHHHT CS
        PsaX  29 AyYFh 33 
                 +yYF 
  CTQ29757.1 400 GYYFR 404
                 68885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3059.74
//
Query:       CTQ29758.1  [L=109]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-15   56.3   1.4    3.3e-15   55.7   1.4    1.3  1  HTH_5     Bacterial regulatory protein, arsR family
    1.8e-08   34.3   0.3    2.7e-08   33.8   0.3    1.3  1  HTH_20    Helix-turn-helix domain
  ------ inclusion threshold ------
      0.018   14.6   0.1      0.029   13.9   0.1    1.3  1  HTH_24    Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> HTH_5  Bacterial regulatory protein, arsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   1.4   5.6e-19   3.3e-15       1      45 [.      14      59 ..      14      60 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 5.6e-19
                SHHHHHHHHHHTT.SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
       HTH_5  1 dptRlkILklLae.gelcvcelaeelglsqstvShHLkkLreaGLV 45
                d+tRl I+ lL   gelcvc+l+ +l  sq+++S+HL++Lre+GL+
  CTQ29758.1 14 DETRLGIVLLLKArGELCVCDLCTALVQSQPKISRHLAMLRESGLL 59
                89*********999******************************96 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.3   4.5e-12   2.7e-08       2      60 ..       7      65 ..       6      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 4.5e-12
                HHHHHHS-HHHHHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEEECTE CS
      HTH_20  2 qiaeALahPvRrrilraLaraegltaselaerldlskntlsyHLrvLeeagLvevvreg 60
                q+++ La+++R++i  +L+ +++l++ +l+ +l  s+  +s+HL+ L+e gL+  +++g
  CTQ29758.1  7 QLFKNLADETRLGIVLLLKARGELCVCDLCTALVQSQPKISRHLAMLRESGLLLDRKQG 65
                78999************************************************999988 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   4.9e-06     0.029       2      46 ..      14      58 ..      14      59 .. 0.97

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.9e-06
      HTH_24  2 detdrkILelLqknprisqreLAerlglSpstvnrrlkrLeeeGl 46
                det++ I  lL++ + ++  +L+ +l  S++ ++r+l  L e+Gl
  CTQ29758.1 14 DETRLGIVLLLKARGELCVCDLCTALVQSQPKISRHLAMLRESGL 58
                89******************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 818.00
//
Query:       CTQ29759.1  [L=76]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-10   40.9   0.0    2.3e-10   40.7   0.0    1.0  1  YCII      YCII-related domain


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   1.3e-14   2.3e-10      21      94 ..       1      63 [.       1      64 [. 0.97

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.3e-14
                HHHHHHHHHHHHHTTGEEEEEEEECSCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT-HHHHTTEEEEEEEEEE CS
        YCII 21 laahlayleelkkeGvllaaGpklvidGpfaetkeqlgGfyiveaadldeaieiaardPfveaGlveerevkef 94
                + ah+++l++ +++G +la+G++ +++          gG++++++++++++++ +++dPf + Gl ++ e+++f
  CTQ29759.1  1 MTAHIEWLKKGYADGLFLASGRRIPRT----------GGVILAKCDSRETLQARLSQDPFQQLGL-ARTEIIPF 63
                679***********************9..........****************************.*****999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       230  (0.0128284); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 555.87
//
Query:       CTQ29760.1  [L=190]
Description: Regulation of enolase protein 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-65  220.6   0.0    1.3e-65  220.5   0.0    1.0  1  DUF1349   Protein of unknown function (DUF1349)
    6.2e-05   22.8   0.0      8e-05   22.5   0.0    1.2  1  GH43_C2   Beta xylosidase C-terminal Concanavalin A-like doma


Domain annotation for each model (and alignments):
>> DUF1349  Protein of unknown function (DUF1349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.5   0.0   1.4e-69   1.3e-65       1     177 [.       7     180 ..       7     181 .. 0.98

  Alignments for each domain:
  == domain 1  score: 220.5 bits;  conditional E-value: 1.4e-69
                 EES--SEEEE-.SSEEEEE--TT--EEESTTT--EEE--EEEEEEESS-EEEEEEEEE---STT-EEEEEEEEETTEEEEEEEEE-SSSEEEEEEEEES CS
     DUF1349   1 WlnePksveeseddsleittepktDfWrrthygfrrdnapflltevagdftaevkvkgefkelyDqaGlmlrvdeenWlKagieyndgaprlgsVvtng 99 
                 W+neP++++++ +d l++ t+++tDfWr+t+ygf+r++++ + +evagdft+++k+ ++f++lyDqaGlm+++de++WlKagie+nd+ap +gsV+t +
  CTQ29760.1   7 WINEPAEWRRD-SDGLTVVTNKHTDFWRHTWYGFERFSGHLYAAEVAGDFTLQAKICADFTTLYDQAGLMMMADEQTWLKAGIEFNDDAPAIGSVLTLT 104
                 ********998.6************************************************************************************** PP

                 SEEEEEEE--SB.TTSEEEEEEEETTEEEEEEESSSS---EEEEEE--S-S-EEEEEEEE-SS-S--EEEEEEEEEE- CS
     DUF1349 100 ysDwsvsplpsevskevwlrlsrrgddlaieysldgenwkllRlfhldadeevkvGvyacsPkregfevtFsefelee 177
                 +sDw+++ +p + ++++wlrl+r+gd+l+++ys+dge+w llRl +++++ +vk+Gv++csP+r g++v F++++l++
  CTQ29760.1 105 HSDWATGLFPGD-PRTFWLRLNRKGDALRLQYSTDGERWPLLRLGYFPPG-PVKAGVMCCSPERGGLAVAFQDIQLSP 180
                 **********99.8*********************************866.***********************9976 PP

>> GH43_C2  Beta xylosidase C-terminal Concanavalin A-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   8.9e-09     8e-05      60     155 ..      55     144 ..       2     150 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 8.9e-09
     GH43_C2  60 ftattklefepekegeeAGLvvyqneyhyyslevtkdekgkrvlrlvkadngeakeelkeekvplqtevkevyLrleveedkakfsysydgkewee 155
                 ft ++k+  + ++  ++AGL+++ +e+++++ +++ +++   + ++++ ++ ++ +       p +   ++++Lrl+ ++d+++ +ys+dg+ w  
  CTQ29760.1  55 FTLQAKICADFTTLYDQAGLMMMADEQTWLKAGIEFNDDAPAIGSVLTLTHSDWATG----LFPGDP--RTFWLRLNRKGDALRLQYSTDGERWPL 144
                 5566666666666779*******************9988888888888888886543....344555..89*********************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1512.23
//
Query:       CTQ29761.1  [L=67]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 566.86
//
Query:       CTQ29762.1  [L=299]
Description: Transcriptional regulator, LysR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-30  103.9   0.0    9.9e-30  103.5   0.0    1.2  1  LysR_substrate  LysR substrate binding domain
    1.5e-22   79.3   0.1    2.7e-22   78.5   0.1    1.4  1  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0069   16.5   0.0      0.013   15.6   0.0    1.4  1  HTH_28          Helix-turn-helix domain
     0.0076   16.0   0.1      0.018   14.9   0.1    1.6  1  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
      0.023   14.6   0.0      0.044   13.7   0.0    1.5  1  MarR_2          MarR family
      0.026   14.3   0.0      0.063   13.1   0.0    1.6  1  HTH_8           Bacterial regulatory protein, Fis family
       0.12   12.3   0.0        0.3   11.0   0.0    1.7  1  MarR            MarR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.0   3.8e-33   9.9e-30       2     206 ..      90     295 ..      89     298 .. 0.93

  Alignments for each domain:
  == domain 1  score: 103.5 bits;  conditional E-value: 3.8e-33
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEE.EEEEEEEEETTSGGGG.SS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLa.eeplvlvaspdhpLar.ge 94 
                     ++++g +ri+ +  +   +l p++a+f+++yP+++le+++ d    ++ ++e+ +Dl+ir+g++ + g++arpL+   +  l+as ++ La+ g 
      CTQ29762.1  90 QEPSGAVRITLSRFAYLLILKPAMAAFCQQYPGIQLEISVYD--GTVNIIEER-FDLGIRFGDILEGGVVARPLMkPFREGLYASSAY-LAEyGV 180
                     89****************************************..****99999.**********************************.****** PP

                     SECGGGGCTSEEEEESTTST...HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEE CS
  LysR_substrate  95 pvsledLadeplilleegsg...lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relyl 185
                     p  ++dL++++li ++  +    l   l+d  ++  ++  + l +n+++ +++ +++GlGi+ l + +++  +++ + +  +++++  +  ++yl
      CTQ29762.1 181 PAMPADLHHHRLIGYRFITNnriLPLILNDHGEQLTVEMPGQLISNDIDVMADGIRHGLGIGRLFEPILQLQPDREQFI-PVMEDYWKTyPPVYL 274
                     ***************844444468888999999999999****************************************.7788875555***** PP

                     EEETTCCCHHHHHHHHHHHHH CS
  LysR_substrate 186 vyrkgrelspavrafidflre 206
                     +y+k+  ++++v+a+idfl  
      CTQ29762.1 275 YYPKNAGRTKRVKALIDFLIM 295
                     ******************975 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.1   1.1e-25   2.7e-22       2      60 .]       7      65 ..       6      65 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 1.1e-25
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                +q+r+f+ +a+eg++++AA++L +++p+vs +++ LEe++g+pLf+Rt+r+++LTe G+
  CTQ29762.1  7 NQIRIFQSIAREGNISAAARKLEITPPSVSNALRLLEEHIGHPLFVRTTRRIELTETGQ 65
                89********************************************************7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.1e-06     0.013       4      38 ..      10      44 ..       8      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.1e-06
      HTH_28  4 eiikllaaGhsvreaArelgisrrtvyrWikryee 38
                +i + +a+ +++++aAr+l i++ +v+  ++ +ee
  CTQ29762.1 10 RIFQSIAREGNISAAARKLEITPPSVSNALRLLEE 44
                6778899999**********************999 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   6.9e-06     0.018      11      45 ..      17      51 ..      13      61 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.9e-06
                TTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TT CS
      HTH_30 11 nggnisatAkaLhvHrnTlryRLrrieellgldld 45
                  gnisa+A++L + + ++++ Lr +ee  g++l 
  CTQ29762.1 17 REGNISAAARKLEITPPSVSNALRLLEEHIGHPLF 51
                679****************************9985 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.7e-05     0.044       8      47 ..       9      44 ..       6      45 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
                HHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2  8 arvLaaLgrrpgrdltvgelarrlglsksavsrilkrLva 47
                 r+   ++r++    ++++ ar+l +++++vs++l+ L++
  CTQ29762.1  9 IRIFQSIAREG----NISAAARKLEITPPSVSNALRLLEE 44
                55666666666....899********************98 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.5e-05     0.063      18      40 ..      18      40 ..      15      41 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.5e-05
                TT-HHHHHHHHTS-HHHHHHHHH CS
       HTH_8 18 gGnkskAArlLGisRrtLyrKLk 40
                +Gn+s+AAr L i++ ++ + L+
  CTQ29762.1 18 EGNISAAARKLEITPPSVSNALR 40
                69**************9998886 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012       0.3       4      43 ..       7      44 ..       6      45 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
                HHHHHHHHHHHSTTEEHHHHHHHHTS-HHHHHHHHHHHHH CS
        MarR  4 tqfviLrilyeqgplsvseLakklgvskstvtrvldrLek 43
                +q++i  +++++g++s +  a+kl++++++v+++l+ Le+
  CTQ29762.1  7 NQIRIFQSIAREGNISAA--ARKLEITPPSVSNALRLLEE 44
                799999999999999988..9*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2585.64
//
Query:       CTQ29763.1  [L=102]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       264  (0.0147247); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 913.45
//
Query:       CTQ29764.1  [L=185]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-37  128.4   0.0    3.4e-37  128.1   0.0    1.0  1  Flavodoxin_2  Flavodoxin-like fold
     0.0031   17.3   0.0     0.0064   16.2   0.0    1.7  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1   0.0   3.7e-41   3.4e-37       2     195 ..       3     170 ..       2     173 .. 0.93

  Alignments for each domain:
  == domain 1  score: 128.1 bits;  conditional E-value: 3.7e-41
                   EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCCT-----CCCCHCCHHHHTTCHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHHHH CS
  Flavodoxin_2   2 kiLiinahprpeksfssalaqafvealekagphevtvrdLyadflpvlttrdlaaklayeekpadveseqiekllaadaivlqfPlwwfgvPailKg 98 
                   +iL++ +hp+ +    s ++++++++l++a p + ++r L+                 y++++ ++++eq e ll+ad+iv+qfP+ w+g+P ++K+
    CTQ29764.1   3 HILVVSGHPDLN---HSIANATILDELATALP-DAEIRRLDW---------------LYPDGKFNIAAEQ-ESLLQADVIVWQFPFSWYGLPGLMKQ 79 
                   8**********4...478*************6.799******...............799989*******.************************** PP

                   HHHHHS-TTTSCEETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHHHHHHHHHTT-EEEEEEEEESCTCCCH.HHHHHHHHHHH CS
  Flavodoxin_2  99 wiDrvltagfafyteeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpplrgilgfiGikdvepvlvegvagaed.eealaealerl 194
                   w+D+v+++gfa+       g++ +L gkk+++++ttG+p++ y+++g  g+a++e+l p++++++++ +  + pv+  g++ a++ ++++a+ +  +
    CTQ29764.1  80 WLDEVFVHGFAH-------GSTAKLGGKKLILSFTTGAPQALYTADGFFGHAIEEYLLPFETTARLCNLALLAPVYTCGISYADRdADKIAQQKTLA 169
                   ************.......57899*********************************************************7777788888877655 PP

                   H CS
  Flavodoxin_2 195 e 195
                   +
    CTQ29764.1 170 R 170
                   5 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.1e-07    0.0064      64     108 ..      50      98 ..       3     118 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 7.1e-07
                 HHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-.....SSCHCCT CS
     FMN_red  64 aellekiaaadaliivtPeYngsysgllKnalDrlsr....trgkkelr 108
                 a+  e + +ad++++  P  +++ +gl+K  lD + +    + +   l 
  CTQ29764.1  50 AAEQESLLQADVIVWQFPFSWYGLPGLMKQWLDEVFVhgfaHGSTAKLG 98 
                 56678999*************************9976555444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1432.45
//
Query:       CTQ29765.1  [L=339]
Description: Uncharacterized oxidoreductase YajO [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-65  220.2   0.0    3.8e-65  220.0   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.05   13.6   0.0       0.12   12.4   0.0    1.6  1  B12-binding   B12 binding domain
       0.06   13.2   0.0        0.1   12.5   0.0    1.3  1  DUF1314       Protein of unknown function (DUF1314)


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.0   0.0   6.4e-69   3.8e-65       1     292 [.      15     313 ..      15     315 .. 0.93

  Alignments for each domain:
  == domain 1  score: 220.0 bits;  conditional E-value: 6.4e-69
                   .EEEE-SSS-ST.......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE.--SSSTTSSSS-HH.HHHHH CS
  Aldo_ket_red   1 elglGtwqlgsk......eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv.dlrdaeiksglske.nires 89 
                   ++++G + +g++      ++ ++  + +++r+ale Ginf+DtA +Y++g+se+++G+al + ++kreev++atK  +   a+i +g+s +  i +s
    CTQ29765.1  15 RICMGCMGFGDPstgqhrWTLDETASRDIIRHALEQGINFYDTAIAYQNGSSERYVGRALRE-MAKREEVVLATKFlPRTAAQIAEGISGKqAIARS 110
                   599999999999999999999999999***********************************.*************88888888999985559**** PP

                   HHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHT CS
  Aldo_ket_red  90 leeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeegllelckkk 182
                   l++sl++Lg dy+Dl+  H++d+++p + +vl+al+  v +Gk+raiG+Sn  ++ql ka    ++++ + +v+vq +ynl  +++e++l+ lc+++
    CTQ29765.1 111 LDQSLRNLGMDYIDLYIYHIWDYNTP-VIDVLEALHTAVTAGKVRAIGISNCYAWQLAKAnalaEREGLTSFVSVQSHYNLIMREDERELFGLCAEE 206
                   **************************.************************************99999999************************** PP

                   T-EEEEBSTTGGGTTGTTTSS---SSSCCC-------.TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG CS
  Aldo_ket_red 183 gvpliaysplggGlltgkyqseedkedkeprkdlkrd.ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldale 278
                   g+++ +ys+l++G l++ +   ++  +++ ++   +   + ++ +  + ++ ela+ h vs+++++l+++l   +v+ +++ga++ ++++  ++a++
    CTQ29765.1 207 GIAMTPYSALASGRLSRLEGHTRREVEDDYARG--KYdGTAEQDRIIIARVAELAERHQVSMTEISLAWLL--TKVTAPVIGATQKHHVDGAVNAVA 299
                   ****************87776666554444433..223777778888999*********************..************************ PP

                   ----HHHHHHHHHH CS
  Aldo_ket_red 279 lklseeevaeldel 292
                   l+ls+e++++l+e+
    CTQ29765.1 300 LQLSPEDIRYLEEA 313
                   ***********997 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.1e-05      0.12      18      74 ..     109     175 ..     103     182 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.1e-05
  B12-binding  18 avlaaalrdagfeVqll......ganven....edivaairaekpdvvglSalltsqleavkelvel 74 
                  ++l + lr+ g++ ++l      ++n+++    e++  a+ a k++++g+S  + +ql+++ +l+e+
   CTQ29765.1 109 RSLDQSLRNLGMDYIDLyiyhiwDYNTPVidvlEALHTAVTAGKVRAIGISNCYAWQLAKANALAER 175
                  67889999999999988889999****999999999999************************9997 PP

>> DUF1314  Protein of unknown function (DUF1314)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.7e-05       0.1      43     106 ..      65     129 ..      53     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.7e-05
     DUF1314  43 slarlvGrartdGlarefvilamkek.dstilGvenasglhllaqslgeflrktGlsnrdlmltr 106
                 s +r+vGra  +   re v+la k   +++    e  sg   +a+sl++ lr+ G+   dl ++ 
  CTQ29765.1  65 SSERYVGRALREMAKREEVVLATKFLpRTAAQIAEGISGKQAIARSLDQSLRNLGMDYIDLYIYH 129
                 7789********************7615556667899***********************98864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2846.34
//
Query:       CTQ29766.1  [L=267]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-38  131.2   0.7    3.4e-18   65.5   0.0    2.3  2  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.1   4.3e-22   7.7e-18       7      85 .]      52     130 ..      46     130 .. 0.90
   2 !   65.5   0.0   1.9e-22   3.4e-18       3      82 ..     175     254 ..     173     257 .. 0.91

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 4.3e-22
                 HHHHHHHHCC.GSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHHHHH CS
         CMD   7 ltalrealla.reggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaaaee 85 
                   +   ++l+ r+  L++++r+++++a+++a+++  ++++ ++ Al+ Gvt+ e+ e++++ a+yagwp+a++A+ +a++
  CTQ29766.1  52 GREAISNDLWqRDT-LSARDRSIVTVAMLIARNQPGELKHYIAVALDSGVTPAEVSEIITHLAFYAGWPNAMSAVSVAKA 130
                 55555677887877.*********************99***************************************985 PP

  == domain 2  score: 65.5 bits;  conditional E-value: 1.9e-22
                 HHHHHHHHHHHHCC.GSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHHHHHHHH CS
         CMD   3 llraltalrealla.reggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaaraAlaa 82 
                 l +++++  + +l+ r+  L+p++r+L+++ +++a g+   + +H+++A+++G+++ee  ev+aqaa+yagwp+a  A+ +
  CTQ29766.1 175 LVKFTADPLFLDLWqRPA-LTPRDRSLVTVSALIAAGQSAQIGYHLNRAMDNGLSAEEAGEVVAQAAFYAGWPNAFTAAPV 254
                 566677777889997866.*********************99**********************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2226.40
//
Query:       CTQ29767.1  [L=75]
Description: L-aminoadipate-semialdehyde dehydrogenase large subunit (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-10   38.2   0.1    9.7e-10   38.0   0.1    1.0  1  NAD_binding_4    Male sterility protein
     0.0012   18.3   0.0     0.0013   18.3   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0024   17.0   0.0     0.0026   17.0   0.0    1.0  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0068   16.3   0.0     0.0076   16.2   0.0    1.1  1  KR               KR domain
  ------ inclusion threshold ------
      0.027   13.9   0.0      0.027   13.9   0.0    1.1  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
       0.18   12.3   0.0       0.18   12.3   0.0    1.1  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma


Domain annotation for each model (and alignments):
>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.1   3.3e-13   9.7e-10       1      56 [.       6      61 ..       6      70 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 3.3e-13
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallk 56
                   +TGaTGFLG   l  +L++++e+++ ll R +s ++a  R++e+l+k++l + l++
     CTQ29767.1  6 ITGATGFLGGAALSYILKEKSECQLLLLTRGESTKHAVMRVNENLRKFQLAETLIN 61
                   8*************************************************999864 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   4.3e-07    0.0013       1      47 [.       4      52 ..       4      69 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.3e-07
                EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHCEEEE CS
   Epimerase  1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledlelve 47
                +l+tGatGf+G a + ++l+++   +++ l+r +s+++   + + +l +
  CTQ29767.1  4 VLITGATGFLGGAALSYILKEKseCQLLLLTRGESTKHAVMRVNENLRK 52
                79******************99655599999997777665555444444 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   8.6e-07    0.0026       1      53 [.       4      56 ..       4      74 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.6e-07
                     EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TTEE CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkklk 53
                     vl+tGa+G +G + ++ ilk+ +  +++ll r E + +++ + + e+l+k +l 
       CTQ29767.1  4 VLITGATGFLGGAALSYILKEkSECQLLLLTRGESTKHAVMRVN-ENLRKFQLA 56
                     8******************9956679********9999988765.444444443 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.6e-06    0.0076       3      50 ..       4      52 ..       3      68 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.6e-06
                EEEETTTSHHHHHHHHHHH.HHHS-EEEEE-SS..--HHHHHHHHHHHH CS
          KR  3 ylitGGlGgLGlelarwla.ekgarhlvllsRsaaadedskaliaelea 50
                +litG++G LG +    ++ ek + +l+ll+R ++++++  +  ++l++
  CTQ29767.1  4 VLITGATGFLGGAALSYILkEKSECQLLLLTRGESTKHAVMRVNENLRK 52
                69********998888777256699*******97666666555555554 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   9.1e-06     0.027       1      33 [.       5      37 ..       5      68 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.1e-06
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsss 33
                   LiTG +Gf G   + ++l+++ e+  +     +
     CTQ29767.1  5 LITGATGFLGGAALSYILKEKSECQLLLLTRGE 37
                   9*******************9998776433322 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     6e-05      0.18       1      46 [.       3      48 ..       3      73 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6e-05
                    EEEEETTTSHHHHHHHH.HHHCTSSEEEEEEEESTTTTTSBHHHHSG CS
  Semialdhyde_dh  1 kvaivGatGyvGqellr.lLeehpevelvvllsssrsaGkklaeavk 46
                    +v i GatG  G + l  +L+e+ e++l+ l+  ++    ++ ++++
      CTQ29767.1  3 NVLITGATGFLGGAALSyILKEKSECQLLLLTRGES-TKHAVMRVNE 48
                    699******988776651566688888888776665.4444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 567.15
//
Query:       CTQ29768.1  [L=91]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-06   26.9   7.5    4.7e-06   26.7   7.5    1.0  1  FUSC_2    Fusaric acid resistance protein-like


Domain annotation for each model (and alignments):
>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   7.5   2.6e-10   4.7e-06      45     127 .]       2      82 ..       1      82 [. 0.92

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.6e-10
      FUSC_2  45 lGavlallllyllpgnlalallvfllvfliafflkrnyalafifltllalllyslaagsgnpieialhRlldvliGiliallv 127
                 lGa+++ ++l++ p++l  +++v  +++l+  f ++ny+ + ++lt ++l++   +  + + +++a +R+l ++ Gi ia+++
  CTQ29768.1   2 LGAIVGSIILVCYPYPLFHIAIVGGMFLLMLQFGAKNYFRWSFCLTTITLAFNPAV--GSDIFSLAQERVLFTIEGISIAFIM 82 
                 9***************999999999999999999****999999999999999886..78899*****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 662.72
//
Query:       CTQ29769.1  [L=224]
Description: Positive transcription regulator EvgA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-16   59.9   0.2    2.3e-16   59.1   0.2    1.5  1  GerE          Bacterial regulatory proteins, luxR family
    3.1e-16   59.5   0.0    4.7e-16   58.9   0.0    1.3  1  Response_reg  Response regulator receiver domain
    0.00017   21.0   0.1    0.00039   19.9   0.0    1.6  1  Sigma70_r4    Sigma-70, region 4
    0.00021   20.9   0.3    0.00046   19.8   0.3    1.6  1  Sigma70_r4_2  Sigma-70, region 4
  ------ inclusion threshold ------
      0.079   12.8   0.0        0.2   11.5   0.0    1.7  1  HTH_23        Homeodomain-like domain
       0.18   11.6   0.1        0.4   10.5   0.0    1.6  2  HTH_Tnp_4     Helix-turn-helix of DDE superfamily endonucleas


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.2   7.6e-20   2.3e-16       2      56 ..     157     211 ..     156     212 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 7.6e-20
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrl 56 
                  Ls++E  vLr l eG sn  IA++++iS kTV+++ks++mkKLn++ +vel+ +
  CTQ29769.1 157 ALSEQEIIVLRHLLEGASNFHIAAKMDISSKTVSTYKSRLMKKLNCQTLVELIGF 211
                 7***************************************************966 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   1.6e-19   4.7e-16      11     111 ..      27     127 ..      17     128 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 1.6e-19
                   HHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEEESSG-HHHH CS
  Response_reg  11 rellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddflsKpfdpeeL 107
                     ++++lle++g+++++ea +g +al+++++ k++ i++D+++p++dG+ l++++r++ ++  +i+ + + e  +     +ag ++f+sK+ +++ +
    CTQ29769.1  27 SIAIKTLLENKGVSVTGEAINGMDALRIVDQLKPNTIIVDVDLPDIDGIGLVETLRKRLYKGSIIVTSNKYEYFYSRCTASAGGNGFVSKKGSINII 123
                   56899********9999**************************************************************************999888 PP

                   HHHH CS
  Response_reg 108 lkal 111
                   l+a+
    CTQ29769.1 124 LSAV 127
                   8776 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.3e-07   0.00039       9      48 ..     160     200 ..     155     201 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.3e-07
                 HHHHHHHHH.TTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   9 erevlelrf.geglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 e+e+++lr  +eg +   I+++++iS  +V+  ++r ++kL
  CTQ29769.1 160 EQEIIVLRHlLEGASNFHIAAKMDISSKTVSTYKSRLMKKL 200
                 899*************************************9 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.3   1.5e-07   0.00046      14      54 .]     160     200 ..     151     200 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.5e-07
                   HHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  14 rqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   +q  i+l + leg s   IA++++is++tV ++ sR +kkL
    CTQ29769.1 160 EQEIIVLRHLLEGASNFHIAAKMDISSKTVSTYKSRLMKKL 200
                   4668888899*****************************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.8e-05       0.2      10      41 ..     165     196 ..     156     200 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.8e-05
      HTH_23  10 illllaeGlsvreIAreLgvsrrTvyrwlkry 41 
                 +l++l+eG+s   IA+++++s  Tv+ +++r 
  CTQ29769.1 165 VLRHLLEGASNFHIAAKMDISSKTVSTYKSRL 196
                 7899999*********************9995 PP

>> HTH_Tnp_4  Helix-turn-helix of DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00013       0.4       2      48 ..     154     201 ..     153     204 .. 0.90
   2 ?   -3.7   0.0       3.6   1.1e+04      26      34 ..     212     220 ..     212     223 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
   HTH_Tnp_4   2 kL.sledqllltLvyLRlnltyqdLayrFgvsestvsrifhkwvdlLa 48 
                 kL  l +q +++L +L ++ +++++a+  ++s +tvs + +++++ L+
  CTQ29769.1 154 KLqALSEQEIIVLRHLLEGASNFHIAAKMDISSKTVSTYKSRLMKKLN 201
                 788899999****************************99888887665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.6
   HTH_Tnp_4  26 ayrFgvses 34 
                 a  F ++es
  CTQ29769.1 212 ANKFRIDES 220
                 667999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1672.71
//
Query:       CTQ29770.1  [L=343]
Description: putative exported lipase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-20   72.4   0.1    5.2e-20   71.9   0.1    1.2  1  LIP              Secretory lipase
    5.7e-10   38.9   0.0    1.3e-09   37.6   0.0    1.5  1  Hydrolase_4      Serine aminopeptidase, S33
    1.5e-09   38.8   0.1    2.1e-09   38.3   0.1    1.2  1  Abhydrolase_6    Alpha/beta hydrolase family
    2.7e-06   27.1   0.0    8.6e-05   22.2   0.0    2.4  2  DLH              Dienelactone hydrolase family
    1.5e-05   24.6   0.3     0.0073   15.8   0.0    2.3  2  Peptidase_S9     Prolyl oligopeptidase family
    0.00082   19.3   0.3      0.056   13.3   0.3    2.2  1  Abhydrolase_3    alpha/beta hydrolase fold
     0.0011   18.7   0.2     0.0015   18.2   0.2    1.4  1  Abhydrolase_1    alpha/beta hydrolase fold
     0.0032   16.5   0.0     0.0064   15.5   0.0    1.4  1  Chlorophyllase   Chlorophyllase
  ------ inclusion threshold ------
      0.014   14.3   0.0      0.027   13.4   0.0    1.5  1  Chlorophyllase2  Chlorophyllase enzyme
      0.067   13.0   0.0        2.2    8.0   0.0    2.2  2  Abhydrolase_2    Phospholipase/Carboxylesterase
      0.082   12.5   0.1          3    7.4   0.0    2.9  4  Esterase         Putative esterase


Domain annotation for each model (and alignments):
>> LIP  Secretory lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.1   3.2e-23   5.2e-20      12     196 ..      74     265 ..      66     314 .. 0.78

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 3.2e-23
         LIP  12 tqaelllivplLkeGyyVvvpDyeGpks....tftvgrqsgkavLdsiraalksekvtgiksdakvalwGYSgGslAsawAaelqpeYAPelelvGaal 106
                 t  +   + + L+ Gy+Vv pDy G++s     +   + +g +vLd+iraal  + +     +   +l G S+G+ A+ +Aa  qp YAPel+++G++l
  CTQ29770.1  74 TARDSQYLNTWLSLGYAVVAPDYPGLGSdgmhHYLNAQGEGWSVLDGIRAALTEFPL-----KNELVLVGQSQGAHAAFAAAGYQPTYAPELNIIGTVL 167
                 56678889999*****************9998887788899***********55555.....5699********************************9 PP

         LIP 107 Ggfv.....anltavaeavdgtv.faG.....lialalnglaneypelkkilkeevneearealeklsencladalikyagesyltgdkrafekgsdvl 194
                  g++     ++++ ++ + d++   +G      i ++ ++ a++ p lk   +++ +++a ++l++ +  c+++   k + +++  + +    +++++l
  CTQ29770.1 168 TGTPyfsaeSDVASLFTKSDDKNqSSGdpkipYIFYIWQSAADTNPTLKA--ENYFQNAALAQLDEAKALCITPLTQKVMHNRLNMN-NSLTPNIQSLL 263
                 87643444479999888877765156655433455677889999999985..67788888889999999999998888887775433.33335555555 PP

         LIP 195 kd 196
                 ++
  CTQ29770.1 264 TN 265
                 54 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   8.2e-13   1.3e-09      25     233 ..      82     322 ..      71     326 .. 0.73

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 8.2e-13
  Hydrolase_4  25 eaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpel.plfllGhSmGGliallyl...lrypd..kvaglilsa.Palkika 115
                  + +   G+av+a D+ G G   g + +++   +    l+ +  ++ +e p + +l+l+G+S G+  a++++    +y++  ++ g +l++ P ++ ++
   CTQ29770.1  82 NTWLSLGYAVVAPDYPGLGSD-GMHHYLNAQGEGWSVLDGIRAAL-TEFPLKnELVLVGQSQGAHAAFAAAgyqPTYAPelNIIGTVLTGtPYFSAES 177
                  556678*************88.66666666666555555553334.45554449*****************665444444566699999845555555 PP

  Hydrolase_4 116 klkappllklllkllgkllpklqv..........................snnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleera 187
                  ++ a+ + k   k  ++  pk++                            +  +a+ l+  p  ++ +++   + + +t ++   l++a+ +l   +
   CTQ29770.1 178 DV-ASLFTKSDDKNQSSGDPKIPYifyiwqsaadtnptlkaenyfqnaalAQLDEAKALCITPLTQKVMHNRLNMNNSLTPNIQSLLTNALPSLSYPT 274
                  55.55555554444444444444455555556665444444777777777777788888888888888888888888888888888888888888888 PP

  Hydrolase_4 188 akitlPllllhGeaDkvvdpeasrelyerlgsk..dktlklypglyHe 233
                   kit P+++ +G++D  v+ + ++++++ ++++  + +++lypgl H+
   CTQ29770.1 275 LKITHPVFIGIGGDDINVPTAMQQQFAKDVQAAgtHTNIHLYPGLDHS 322
                  8888************************999988899********996 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.1   1.3e-12   2.1e-09      14     213 ..      84     326 ..      53     330 .. 0.53

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 1.3e-12
                    GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH.......CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.........EEEEES- CS
  Abhydrolase_6  14 WlvapLaallaagvhvlapDlpGhGrsdpppldled.......ladlaalldelaagggpvvlvGHSlGGalalaaapla.......lvvgvlldp 95 
                    Wl  +L      g++v+apD+pG G sd++++ l++       l+ ++a+l+e++   ++ vlvG S+G++ a aaa +         ++g +l +
     CTQ29770.1  84 WL--SL------GYAVVAPDYPGLG-SDGMHHYLNAqgegwsvLDGIRAALTEFP-LKNELVLVGQSQGAHAAFAAAGYQptyapelNIIGTVLTG 169
                    33..55......7999*********.99999666665555552566688888885.56666********999999666668888887556655555 PP

                    ............----TTT..........S----TTHHHHHHTT-C..CCCHCCHS-HSCCCCHHHCCCCHCHCCCGHH................. CS
  Abhydrolase_6  96 pp..........talpagl..........laaalelllallallrl..lawlsreplprlfladedadaawrarlarla................. 152
                    +p          +     +          +++ ++++   ++++++  +++ +++++    la++d                              
     CTQ29770.1 170 TPyfsaesdvasL-----FtksddknqssGDPKIPYIFYIWQSAADtnPTLKAENYFQNAALAQLD------------Eakalcitpltqkvmhnr 248
                    3334443333321.....023223444555555555555555444333344433322223333333............022222222333333333 PP

                    ............HHCCHHCHTTCCHHTT-TTGCEEEC.TT-C......HHHHCHHCCCH.STTEEETCE...SSS-HHHHS CS
  Abhydrolase_6 153 ............allaglgllpaaawadlpvpllvlg.geDp......lvprllerlla.qagarlpvvlpgaGHlphlee 213
                                 ll+   +    +   ++ p+++ g g+D+      + ++++++  a  ++  + +++pg +H+    +
     CTQ29770.1 249 lnmnnsltpniqSLLTNALPSLSYPTLKITHPVFI-GiGGDDinvptaMQQQFAKDVQAaGTHTNI-HLYPGLDHSGAV-N 326
                    33443222222111111112223344444444444.666666655444333444444444455555.999999997665.5 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.066   1.1e+02       8      47 ..      46      95 ..      39     157 .. 0.74
   2 !   22.2   0.0   5.3e-08   8.6e-05     141     188 ..     275     322 ..     266     329 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.066
         DLH  8 pknakkpvvvviqeifGvn...........dnikdiserlaeeGYvalaPd 47
                p+   +pv+v  +  +G+n               +  +  ++ GY+++aPd
  CTQ29770.1 46 PEGG-WPVIVWTHGTVGINsdcapslntrtARDSQYLNTWLSLGYAVVAPD 95
                5555.9999999999999976655543322111223344567788888887 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 5.3e-08
         DLH 141 akikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHa 188
                  ki +p+++ +g+ D  +p +  +++++ ++aa+ + ++++Ypg +H+
  CTQ29770.1 275 LKITHPVFIGIGGDDINVPTAMQQQFAKDVQAAGTHTNIHLYPGLDHS 322
                 6899*******************************************8 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0027       4.5       8      85 ..      82     153 ..      75     157 .. 0.70
   2 !   15.8   0.0   4.5e-06    0.0073     137     189 ..     272     324 ..     246     334 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0027
                   HHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH- CS
  Peptidase_S9   8 qlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqr 85 
                   +++ ++Gy+vv++++ G g  G   h+ ++ +   +++ D i a   + + ++  +++l++ G S G   + aa++ +
    CTQ29770.1  82 NTWLSLGYAVVAPDYPGLGSDG--MHHYLNAQGEGWSVLDGIRA---ALT-EFPLKNELVLVGQSQGAHAAFAAAGYQ 153
                   45559**************555..55555555566666555554...433.356678899999999988888888755 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 4.5e-06
                   GGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTT CS
  Peptidase_S9 137 ldnvkaypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvg 189
                   +  +k+++p+++  G  D +vp a   ++++ +q +g+++ ++ +p+ +H+++
    CTQ29770.1 272 YPTLKITHPVFIGIGGDDINVPTAMQQQFAKDVQAAGTHTNIHLYPGLDHSGA 324
                   4455699*******************************************765 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.3   3.5e-05     0.056      28     208 ..      87     322 ..      69     325 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.5e-05
                    HTSEEEEEE--.-T..TTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---..................... CS
  Abhydrolase_3  28 lgavvvsvdYr.lA..PehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalrardegepk..................... 99 
                    lg++vv++dY  l     h++  a  +++++l  +++   e+ +++ ++vl+G+S G++ a a+a  +     p+                     
     CTQ29770.1  87 LGYAVVAPDYPgLGsdGMHHYLNAQGEGWSVLDGIRAALTEFPLKN-ELVLVGQSQGAHAAFAAAGYQPTY-APElniigtvltgtpyfsaesdva 180
                    5667777777633322458888888888888888888865666554.588889999998888888444443.233446677778888888888888 PP

                    ...............EEEEEEESE-SSTSSTTSHHHHHCHHT.TTSSSSCHHHHHHHHHHHS.S.GGGGGSTTTSGGGC..S-............. CS
  Abhydrolase_3 100 ...............vagqvliyPvtdlertesesikkaeel.adgplltraaldlfwrlyl.p.eadrddplasplla..ed............. 162
                                   ++   ++y ++ + + ++++ k ae++ ++++l    +ld++  l++ p  +++++ +++   +  ++             
     CTQ29770.1 181 slftksddknqssgdPKIPYIFYIWQSA-ADTNPTLK-AENYfQNAALA---QLDEAKALCItPlTQKVMHNRLNMNNSltPNiqslltnalpsls 271
                    8888888777777776666666666544.33344443.22332443333...33333333332344444444333222221112223222333344 PP

                    ...SST---EEEEEETT-TTHHH..HHHHHHHHHHTT--EEEEEETTEETT CS
  Abhydrolase_3 163 ...lsglpptlvvvaefDplrde..geayaerlraagvevelieyegmvHg 208
                       l+ + p+++ +++ D+      ++++a+ ++aag++++++ y+g+ H+
     CTQ29770.1 272 yptLKITHPVFIGIGGDDINVPTamQQQFAKDVQAAGTHTNIHLYPGLDHS 322
                    555888888*********98765116789*******************996 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.2   9.2e-07    0.0015       2     107 ..      52     177 ..      51     308 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.2e-07
                    EEEEE-STTT.CGGGGTTGHHHHHHHHT..........TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEE.EEEETHHHH CS
  Abhydrolase_1   2 vlvilhGlpg.ssdvwaerglapaLakd..........gfdvillDlrGvgySspapacinddygtasvaddldrildalgddklt.lvGhSmGGm 85 
                    v+v  hG  g +s   ++++l    a+d          g+ v+++D +G g+   ++  +  + + +sv d ++++l  +++++   lvG+S+G  
     CTQ29770.1  52 VIVWTHGTVGiNS--DCAPSLNTRTARDsqylntwlslGYAVVAPDYPGLGSDGMHHYLN-AQGEGWSVLDGIRAALTEFPLKNELvLVGQSQGAH 144
                    6666677777433..34555666666667777777888***************9999865.78899************999997665********* PP

                    HHHHHHHHHGGGEEEEEEESE...........C CS
  Abhydrolase_1  86 ialayaaeyperVkalvllga...........i 107
                     a+a+a   p +   l  +g+           +
     CTQ29770.1 145 AAFAAAGYQPTYAPELNIIGTvltgtpyfsaeS 177
                    *******99999999988888554444444432 PP

>> Chlorophyllase  Chlorophyllase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.9e-06    0.0064      14     146 ..      16     161 ..      11     171 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.9e-06
  Chlorophyllase  14 yktteitvdsssrs..spapPkpliivtPaeaGtypvvlflhGtllsnkfy...........skllnhiashGfivvaPqlykllpPsaqdeids 95 
                     y+ +  +vd ++ +   + +   +i   P  +G +pv+++ hGt+  n++            s+ ln   s G+ vvaP    l + +  + ++ 
      CTQ29770.1  16 YRIEYTAVDGVRGKgeRTDSAAVFIPFGPEPEGGWPVIVWTHGTVGINSDCapslntrtardSQYLNTWLSLGYAVVAPDYPGLGSDGMHHYLNA 110
                     666666666444331033333344456899**************98887642222333333388999999*********9877777777888888 PP

  Chlorophyllase  96 aaevieWls.eglkavlptsveanlsklalvGhsrGGktafalal...gysselt 146
                      +e   W    g++a l +   +  + l lvG s+G ++afa a     y++el+
      CTQ29770.1 111 QGE--GWSVlDGIRAALTEF--PLKNELVLVGQSQGAHAAFAAAGyqpTYAPELN 161
                     877..453314677777654..34457899************8855555666665 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.7e-05     0.027       9     108 ..      42     150 ..      34     166 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.7e-05
  Chlorophyllase2   9 vaPteageYpvllflhGyl...........llnslYsqlLkhiashgfivvapqlykvaeadakeiksaakvlnW.lakgLesvlpeevepdls 90 
                      + P+ +g +pv++++hG++            ++   sq L+   s g+ vvap    + +  +      a+   W + +g++ +l+e   p  +
       CTQ29770.1  42 FGPEPEGGWPVIVWTHGTVginsdcapslnTRTARDSQYLNTWLSLGYAVVAPDYPGLGSDGM-HHYLNAQGEGWsVLDGIRAALTE--FPLKN 132
                      67999************988444433322222233578899999**********888754444.33444444556367889999987..58899 PP

  Chlorophyllase2  91 klalsgHSrGgktafala 108
                      +l+l+g S+G+++afa a
       CTQ29770.1 133 ELVLVGQSQGAHAAFAAA 150
                      9**************976 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.059        97      95     127 ..     122     154 ..     116     178 .. 0.80
   2 ?    8.0   0.0    0.0013       2.2     157     201 ..     279     323 ..     262     334 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.059
                    HHHHHTT--GGGEEEEEETHHHHHHHHHHHT-S CS
  Abhydrolase_2  95 daelkkgipssriiigGFSqGaalalylaltlp 127
                    +a l++   +++ +++G SqGa  a ++a  +p
     CTQ29770.1 122 RAALTEFPLKNELVLVGQSQGAHAAFAAAGYQP 154
                    556666667899**********99988776655 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0013
                    -EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEEEETT--SS- CS
  Abhydrolase_2 157 lpilqiHgeeDpvvplalgkaakevlkkllkkvelksyeglaHsi 201
                     p++ + g +D  vp a+++++++  +++ ++ + + y+gl Hs 
     CTQ29770.1 279 HPVFIGIGGDDINVPTAMQQQFAKDVQAAGTHTNIHLYPGLDHSG 323
                    6899999************************************95 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.18     3e+02      13      34 ..      39      64 ..      31      96 .. 0.70
   2 ?    7.4   0.0    0.0018         3     109     138 ..     127     155 ..     119     157 .. 0.86
   3 ?   -3.0   0.0       2.9   4.7e+03      27      58 ..     203     232 ..     193     268 .. 0.73
   4 ?   -1.1   0.0      0.73   1.2e+03     209     239 ..     294     324 ..     282     335 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.18
                EE.CC.GGTTTEEEEEEE--T....T CS
    Esterase 13 yLPedyspgrkypvvylldGl....t 34
                + P + +p+++ pv+++++G     +
  CTQ29770.1 39 FIPFGPEPEGGWPVIVWTHGTvginS 64
                55555578999*********655552 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0018
                 HCSEECCCEEEEEETHHHHHHHHHHHCSTT CS
    Esterase 109 nfrtapdgravaGqSmGGlgALilalkhpd 138
                 +f+ + +  +++GqS+G+++A  +a + p+
  CTQ29770.1 127 EFPLKNE-LVLVGQSQGAHAAFAAAGYQPT 155
                 5667777.89**************988885 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.9
                 EEEE--TTHHCCHHHHHCHHCCCCHCCT.EEE CS
    Esterase  27 vylldGltgwdqnfrakelleslaregeiaev 58 
                 ++++++  ++   ++a+ +++++a   +++e+
  CTQ29770.1 203 YIWQSA-ADTNPTLKAENYFQNAALA-QLDEA 232
                 567777.8888888888888777766.45554 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.73
                 HHHHCCHHHHCCCCCCTT-SCCCC--SSHHH CS
    Esterase 209 larnrelkeqlaargvegedheydGghswey 239
                 +a+++++++ ++a+g + + h y+G  +  +
  CTQ29770.1 294 TAMQQQFAKDVQAAGTHTNIHLYPGLDHSGA 324
                 5678899999999999999999998776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2662.60
//
Query:       CTQ29771.1  [L=88]
Description: transposase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-16   61.2   0.1    1.2e-16   60.9   0.1    1.1  1  rve          Integrase core domain
    2.7e-06   27.0   0.0    4.1e-06   26.5   0.0    1.3  1  rve_3        Integrase core domain
  ------ inclusion threshold ------
      0.022   15.1   0.0      0.032   14.6   0.0    1.3  1  DDE_Tnp_1_2  Transposase DDE domain
       0.03   14.5   0.4       0.07   13.3   0.1    1.8  2  rve_2        Integrase core domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.1   2.7e-20   1.2e-16      54     118 ..       3      67 ..       1      68 [. 0.92

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 2.7e-20
         rve  54 lleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqdnGkvErfhrtlkde 118
                 +le+a +  g+    +++sD+gs+yts++fr++l +++i++s++r+g+++dn  +Erf++ +k+e
  CTQ29771.1   3 ALEMAWQTCGKPVGVMFHSDQGSHYTSRQFRQLLWRYRIKQSMSRRGNCWDNSPMERFFGRVKNE 67 
                 6777777777776899***********************************************98 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   9.3e-10   4.1e-06       2      37 ..      40      75 ..      39      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 9.3e-10
       rve_3  2 gielsyiapgkPqqNglvEsfngtlrdellneelfr 37
                +i++s++++g +++N  +E+f+g++++e+ + + + 
  CTQ29771.1 40 RIKQSMSRRGNCWDNSPMERFFGRVKNEMFYGRKWA 75
                79**************************99988764 PP

>> DDE_Tnp_1_2  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   7.1e-06     0.032       6      43 ..      26      63 ..      20      69 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.1e-06
  DDE_Tnp_1_2  6 gYrsralrealkergIrasipplgrpaknkaapkkqar 43
                  Y+sr++r++l++++I+ s+  +g++ +n+  ++ ++r
   CTQ29771.1 26 HYTSRQFRQLLWRYRIKQSMSRRGNCWDNSPMERFFGR 63
                 5*************************998777776666 PP

>> rve_2  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         1   4.5e+03      41      49 ..      26      34 ..      20      35 .. 0.74
   2 ?   13.3   0.1   1.6e-05      0.07       1      20 [.      58      77 ..      58      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1
       rve_2 41 glsPvqYrn 49
                + ++ q+r+
  CTQ29771.1 26 HYTSRQFRQ 34
                567778885 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.6e-05
       rve_2  1 EsfFgsLKtElvygetfktl 20
                E fFg  K+E++yg +++++
  CTQ29771.1 58 ERFFGRVKNEMFYGRKWADI 77
                78************987764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 731.32
//
Query:       CTQ29772.1  [L=309]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-23   83.2   1.3    1.6e-23   83.2   1.3    1.8  2  LysR_substrate  LysR substrate binding domain
    2.8e-13   49.6   0.2    6.7e-13   48.4   0.2    1.7  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.017   15.0   0.2       0.11   12.4   0.2    2.5  2  MarR_2          MarR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.043   2.5e+02     104     144 ..      56      96 ..      39     106 .. 0.84
   2 !   83.2   1.3   2.7e-27   1.6e-23       3     206 ..      93     295 ..      91     298 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.043
                     SEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHH CS
  LysR_substrate 104 eplilleegsglrdlledalreaglkprvalevnslealla 144
                      +++l +   ++rd++++a ++a+  ++++ e+ s++ l++
      CTQ29772.1  56 RNMVLTPWAEATRDRARRAVHDARAVLQPSTETFSAQNLAR 96 
                     56677777777999999999999999999999998887765 PP

  == domain 2  score: 83.2 bits;  conditional E-value: 2.7e-27
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvs 97 
                      l++ ++i a + +   + p l+a+ + + P+v ++   ++ e   + l+eg +Dl i  +    ++++ ++L+e+++v v++++hpLa+++++ 
      CTQ29772.1  93 NLARLFTIRANDGFVVAFGPALIAAVADAAPDVCIRFAPKP-EKTSRYLREGLVDLEIGVQSNMGPEIRLQRLFEDRFVGVVRKGHPLAKQAEIG 186
                     5677789999999999*************************.888888*********************************************** PP

                     GGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETTC CS
  LysR_substrate  98 ledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkgr 191
                       d   + +++ +++ +l+ +++dal+e g k+++a  v  + ++l+ ++  + ia++p++++ +    +++   +lp    +  +++ +++++ 
      CTQ29772.1 187 VGDYVAWGHVVASPEGALHGSVDDALAELGTKRKIASVVPGFPTALSVALESDLIAMIPALYLLNQQVTDQVHLFELPF-KSRrITVSQMWHPRM 280
                     *******************************************************************************.5555*********** PP

                     CCHHHHHHHHHHHHH CS
  LysR_substrate 192 elspavrafidflre 206
                     e++p  r++++++++
      CTQ29772.1 281 ERDPGHRWLREQILA 295
                     ***********9987 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.2   1.1e-16   6.7e-13       1      58 [.       6      63 ..       6      65 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.1e-16
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTea 58
                +++l +++ +  e s+++AA++L+ls +a+sr ++rL++  g+p+++R gr+++LT+ 
  CTQ29772.1  6 FNLLVALDVLLSEASVAGAARRLNLSTSAMSRTLSRLRDVTGDPILVRAGRNMVLTPW 63
                58999***************************************************95 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   1.8e-05      0.11      22      46 ..      19      43 ..       1      44 [. 0.80
   2 ?   -2.6   0.0       0.9   5.4e+03      26      39 ..     292     305 ..     283     306 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.8e-05
                EEHHHHHHHHTSSHHHHHHHHHHHH CS
      MarR_2 22 ltvgelarrlglsksavsrilkrLv 46
                 +v+  arrl+ls sa+sr+l rL 
  CTQ29772.1 19 ASVAGAARRLNLSTSAMSRTLSRLR 43
                59999*****************995 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.9
                 HHHHHHTSSHHHHH CS
      MarR_2  26 elarrlglsksavs 39 
                 ++ + +g+ +s ++
  CTQ29772.1 292 QILAICGVARSVMT 305
                 78899999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2444.85
//
Query:       CTQ29773.1  [L=462]
Description: putative transport protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-39  135.2  47.7    4.8e-39  134.3  47.7    1.5  1  MFS_1       Major Facilitator Superfamily
    8.9e-09   34.7  28.8      5e-07   29.0  15.4    2.3  2  Sugar_tr    Sugar (and other) transporter
     0.0011   17.9  11.1     0.0011   17.9  11.1    2.1  2  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
      0.048   13.2   0.6       0.12   11.9   0.6    1.7  1  MTABC_N     Mitochondrial ABC-transporter N-terminal five TM 


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.3  47.7   1.1e-42   4.8e-39       1     353 []      25     416 ..      25     416 .. 0.88

  Alignments for each domain:
  == domain 1  score: 134.3 bits;  conditional E-value: 1.1e-42
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlg 98 
                 +++++++  ++ +++++alp  +a++ ++ +s + + + +y l+aa +  ++++l+ r+G r+v+l+gl++f l++l +++ ++ + +l+ +rvlqG+g
  CTQ29773.1  25 IMITTLMGVFDGTMINIALP-SMAQEMQVPASIAVWFANGYLLAAAMTLAIFAALAARLGYRPVFLAGLTTFTLTSLGCAL-ANKPeVLIGMRVLQGIG 121
                 578999999***********.9*****************************************************888887.88899************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee......... 188
                 ++a ++++ a+++ +fp++  gr +g+ ++ ++ ++++gp+lgg +++ l+W+++f i+ + ++la++l++  lp+++ + + + ++            
  CTQ29773.1 122 GAATLSIAPAILRSVFPGRLLGRILGFHALLIASSSAIGPVLGGTILHTLSWQWLFAINVLPGILALLLAVRALPRDAIRMQAPFDTVGAilsalllgs 220
                 ********************************************************************99999988888888887766669******** PP

       MFS_1 189 ..................................kgtgpaplvpawkallkdpvlwillialllfffgfsg...lltllplylqevlglsglllaglll 250
                                                    ++ ++pl+p  +++++ + +   l+a+ ++  +f +   +++ lp+++q+ +g+s  + ++ll+
  CTQ29773.1 221 timaanslqnatsqfgslcwmalavlsgmafiwqIRRTGSPLLP-PSMFKNER-F--TLAAFTSMV-AFVSqgiTFIALPFLFQSEYGYS-PVVSALLF 313
                 *******9999999999999999999999999988888888888.55555555.4..333333333.3333356****************.78888899 PP

       MFS_1 251 allalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll.vlvliGfglgfvfpsllalasdlappeeagtasglfntagslg 348
                     l+++ +a++agr++d +++  + +l+l+++++++++la l++   +++ ++  ++++G+g+g+++++ +  + +++ +e+a  asg+ ++++++g
  CTQ29773.1 314 TPWPLGIVLIAPHAGRWADTISAPAISTLGLVIFVVGLILLATLPAR-PSMWDIClRSLVCGIGFGCFQSPNNREMLSNVIREHASYASGVLSIMRTFG 411
                 9999999999**********998888888888888888888888888.7777777555669*******88888888888889***************** PP

       MFS_1 349 galgp 353
                  +lg+
  CTQ29773.1 412 QCLGA 416
                 *9995 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0  15.4   1.1e-10     5e-07      46     188 ..      55     191 ..      21     196 .. 0.87
   2 !   11.6   5.5   2.1e-05     0.094       2     121 ..     241     382 ..     240     448 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.1e-10
                 .HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHH CS
    Sugar_tr  46 vlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyq 144
                 +   ++++ +l+ a+++  ++  l+ r+G+++++l++ + f   ++ +a+a+   + evli +Rvl Gig  ++  ++P  +  + p +l g++ +++ 
  CTQ29773.1  55 SIAVWFANGYLLAAAMTLAIFAALAARLGYRPVFLAGLTTFTLTSLGCALAN---KPEVLIGMRVLQGIGGAATLSIAPAILRSVFPGRLLGRILGFHA 150
                 344699999*******************************************...9******************************************* PP

                 HHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG CS
    Sugar_tr 145 laitfGilvaaifglglnktsnadgwrillglqlvpallllill 188
                 l i+    ++ ++g  + +t +   w++l++++++p +l l+l 
  CTQ29773.1 151 LLIASSSAIGPVLGGTILHTLS---WQWLFAINVLPGILALLLA 191
                 **********************...************9988765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH.........................HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHH CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskee......................ssvlsglivsiflvGaiiGslfagllgdrfGRkks 78 
                 + +a+l+g+ f + +   g++l  ++ +kn+ ++ +  +                         s v s l++    +G ++ +  ag ++d+++   +
  CTQ29773.1 241 MALAVLSGMAFIWQIRRTGSPLLPPSMFKNERFTLAAFTSMVafvsqgitfialpflfqseygySPVVSALLFTPWPLGIVLIAPHAGRWADTISAPAI 339
                 57899999******************999999988876554479999************999999999999999999********************** PP

                 HHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHH CS
    Sugar_tr  79 lliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasv 121
                    + v+fv+g +l a+ +++ s++ +++  +++Gig G+++ 
  CTQ29773.1 340 STLGLVIFVVGLILLATLPARPSMWDICLRSLVCGIGFGCFQS 382
                 ***************************************9864 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9  11.1   2.5e-07    0.0011     226     384 ..      20     178 ..      17     179 .. 0.86
   2 !    3.2   7.3    0.0075        34     153     368 ..     206     417 ..     202     430 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.5e-07
  MFS_1_like 226 eviifllvalilgmswgiienFlflYL.kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLh 323
                 +v++ +++++++g++ g + n +   + +e++ + +++  +     +a  +++ +   l  +lG + + +++l++++l+ l+ a+ +++ +++ + vL+
  CTQ29773.1  20 RVMAAIMITTLMGVFDGTMINIALPSMaQEMQVPASIAVWFANGYLLAAAMTLAIFAALAARLGYRPVFLAGLTTFTLTSLGCALANKPEVLIGMRVLQ 118
                 6888889999999999988888766665677777666666666666777778888899***************************************** PP

  MFS_1_like 324 gisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaiflFr 384
                 gi  +++ ++a    + ++p +l +++ g+ + l +   +a+G ++GG +  + s ++lF 
  CTQ29773.1 119 GIGGAATLSIAPAILRSVFPGRLLGRILGFHALL-IASSSAIGPVLGGTILHTLSWQWLFA 178
                 *****************************76655.77799*********999888888885 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0075
  MFS_1_like 153 fGsvGyaifafitGilidhysvnllpysallyvlaallvisllvvlilnetekesklkvtkslqvllnilknpeviifllvalilgmswgiie.nFlfl 250
                 f +vG +++a ++G  i   +     ++ +   + +l  ++l+v++ +   ++ + ++    +     ++kn +  +  ++ ++  +s gi   +  fl
  CTQ29773.1 206 FDTVGAILSALLLGSTIMAANS----LQNATSQFGSLCWMALAVLSGMAFIWQIRRTGSPLLPP---SMFKNERFTLAAFTSMVAFVSQGITFiALPFL 297
                 6778888888888888888777....33566777777777777777777888777777775554...67888888777777777778888754155688 PP

  MFS_1_like 251 YLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaii...enawlvlpievLhgisfgllwaaaveyvskiapksl 346
                 + +e+g+s  +   l +   ++ + +   a ++ +++++  + +++l+++++ ++l+a++    ++w + +  +  gi fg + +   + +   + +++
  CTQ29773.1 298 FQSEYGYSPVVSALLFTPWPLGIVLIAPHAGRWADTISAPAISTLGLVIFVVGLILLATLparPSMWDICLRSLVCGIGFGCFQSPNNREMLSNVIREH 396
                 88*******99999999999999999999********************************999999999999**********9999999999999999 PP

  MFS_1_like 347 eatgqgllsglyfglGralGsl 368
                 ++   g+ls++   +G++lG+ 
  CTQ29773.1 397 ASYASGVLSIM-RTFGQCLGAA 417
                 99999999988.6799999986 PP

>> MTABC_N  Mitochondrial ABC-transporter N-terminal five TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   2.7e-05      0.12      28     117 ..     237     324 ..     232     359 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.7e-05
     MTABC_N  28 ssvllgllllfgtlqlilyrkygtelepkaiprsrlyklqlvlallllllalarlilraallksgevygylilalvlsllawlfslllll 117
                 s+  ++l++l g++ ++ +r+ g++l p ++ + + ++l  + +++  +   +++i+  +l++s+  ygy  + + l +  w++ ++l+ 
  CTQ29773.1 237 SLCWMALAVLSGMAFIWQIRRTGSPLLPPSMFKNERFTLAAFTSMVAFVSQGITFIALPFLFQSE--YGYSPVVSALLFTPWPLGIVLIA 324
                 56778999*****************8888899999999**********************99888..9******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3120.33
//
Query:       CTQ29774.1  [L=237]
Description: Tetratricopeptide repeat transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-30  105.4   1.7    3.1e-30  104.2   1.7    1.6  1  Peptidase_M23    Peptidase family M23
    9.7e-16   57.6   2.1      1e-15   57.5   0.0    2.1  3  LysM             LysM domain
     0.0055   16.5   0.0       0.16   11.8   0.0    2.5  2  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
      0.023   14.6   0.0       0.69    9.9   0.0    2.5  2  RnfC_N           RnfC Barrel sandwich hybrid domain
       0.15   12.2   0.0        0.4   10.8   0.0    1.7  2  OapA             Opacity-associated protein A LysM-like domai


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   1.7   8.6e-34   3.1e-30       3      96 .]     131     224 ..     129     224 .. 0.96

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 8.6e-34
                    ESSEEEEETTT-EEEESSSEEEEEEEE.ETTTEEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEBSTSSCSSSEEEEEEEETTEEE-C CS
  Peptidase_M23   3 hkGidiaapkgtpVlAaadGtVvfagk.kegyGnvviidhgdgystlyahlskisvkegqkVkaGqvIGtvgstgrstgphLhfeirkngkavdp 96 
                    +kGidia  +g+pV+Aa +G+Vv++g+  +gyGn+++i+h++ y+t yah++k+ v+ gq VkaGq+I+t+gst  +    Lhf+ir + +a+dp
     CTQ29774.1 131 NKGIDIAGTRGQPVYAAGAGKVVYVGNqLRGYGNLIMIKHSEDYITAYAHNDKLMVNNGQSVKAGQQIATMGSTD-ADSVRLHFQIRYRATAIDP 224
                    79*************************878********************************************9.6779*************98 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   2.8e-19     1e-15       1      43 [.      30      72 ..      30      73 .. 0.98
   2 ?   -3.7   0.1       3.7   1.3e+04      32      40 ..     102     110 ..     100     110 .. 0.77
   3 ?   -1.7   0.0      0.91   3.3e+03      34      41 ..     191     198 ..     184     199 .. 0.71

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 2.8e-19
                EEE-TT--HHHHHHHCTCHHHHHHHHCTCSSCGG--TTEEEEE CS
        LysM  1 YtVkkGDTLwsIAkrygitveklleaNnlsspdkifpGqkLki 43
                YtVk+GDTL++I++  g++v++l+++Nn+s+p +i++GqkLk+
  CTQ29774.1 30 YTVKRGDTLYGISRTTGTSVRDLARLNNISPPYTIEVGQKLKL 72
                9****************************************96 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.7
                 CGG--TTEE CS
        LysM  32 pdkifpGqk 40 
                 + ++ +Gq+
  CTQ29774.1 102 SSWPPVGQR 110
                 56999**95 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.91
                 G--TTEEE CS
        LysM  34 kifpGqkL 41 
                  +++Gq++
  CTQ29774.1 191 SVKAGQQI 198
                 48999997 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.06   2.2e+02      24      33 ..      32      41 ..      31      44 .. 0.84
   2 !   11.8   0.0   4.6e-05      0.16      16      36 ..     184     204 ..     182     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.06
  Biotin_lipoyl_2 24 VkaGdvLael 33
                     Vk Gd+L+ +
       CTQ29774.1 32 VKRGDTLYGI 41
                     9******976 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.6e-05
  Biotin_lipoyl_2  16 lnVkdGqrVkaGdvLaelDsr 36 
                      l V  Gq VkaG+ +a+  s+
       CTQ29774.1 184 LMVNNGQSVKAGQQIATMGST 204
                      67999***********98665 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.055     2e+02      55      83 ..     133     158 ..     115     169 .. 0.79
   2 ?    9.9   0.0   0.00019      0.69      42      63 ..     182     203 ..     176     232 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.055
      RnfC_N  55 GqkiaeaegfvsapvhasvsGtVkaiekr 83 
                 G  ia ++g    pv+a  +G+V+ + ++
  CTQ29774.1 133 GIDIAGTRGQ---PVYAAGAGKVVYVGNQ 158
                 5555555555...9*********999876 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00019
      RnfC_N  42 akplvkvgdkVlkGqkiaeaeg 63 
                  k++v++g+ V+ Gq+ia+ ++
  CTQ29774.1 182 DKLMVNNGQSVKAGQQIATMGS 203
                 5889**************9865 PP

>> OapA  Opacity-associated protein A LysM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00011       0.4       4      55 ..      29      76 ..      27      90 .. 0.86
   2 ?   -2.9   0.0       2.1   7.6e+03      43      51 ..     192     200 ..     185     212 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
        OapA  4 eyqvkkgktLaqvFRdnnLplsdvnalakveGadkplSnlksGqkvriklna 55
                +y+vk+g+tL+ + R  + ++ d+  l +++    p   +  Gqk++++ ++
  CTQ29774.1 29 TYTVKRGDTLYGISRTTGTSVRDLARLNNIS----PPYTIEVGQKLKLNGSS 76
                7**************************9998....77788888888876655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.1
        OapA  43 lksGqkvri 51 
                 +k+Gq++  
  CTQ29774.1 192 VKAGQQIAT 200
                 566666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1900.51
//
Query:       CTQ29775.1  [L=184]
Description: isopentenyl diphosphate isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-22   78.0   0.0    8.8e-22   77.6   0.0    1.2  1  NUDIX     NUDIX domain
  ------ inclusion threshold ------
       0.13   11.6   0.0       0.21   10.9   0.0    1.4  1  Nrap_D4   Nrap protein nucleotidyltransferase domain 4


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   9.8e-26   8.8e-22       2     130 ..      31     161 ..      30     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 9.8e-26
                 EEEEEEEEEEETTSEEEEEEES..SSSTTT.EE.SSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE...EEEEEEEEEEEEC CS
       NUDIX   2 lrravgvvllnekgevLlvrrs..kkpfpg.We.lPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygd...eheilyvfleeve 93 
                 l+ a++++l+n++g++L++rrs  kk +pg W+  ++G+ ++gEt+e+A+ R+++ E+G+e      ++ +h  + y+++ ++   e+e++ v++++v 
  CTQ29775.1  31 LHLAFSCWLFNQQGQLLVTRRSlgKKAWPGvWTnSVCGHPQQGETFEQAVTRRCRFELGVEI---SDIAPVHPAFRYRAVAPNgivENEVCPVYAARVV 126
                 799*****************************88*************************944...556667888899999888999************* PP

                 SGCSSTSTTTEEEEEEEEHHHHHHHHTHCTHHHHHHH CS
       NUDIX  94 gelepndenevsevrwvpleellkeklaaesrkllpw 130
                 +e++pn ++ev +++wv+l+ + + +laa  + + pw
  CTQ29775.1 127 SEVQPN-DDEVMDYQWVDLATM-LSALAATPWAFSPW 161
                 *****9.*************99.77777777777776 PP

>> Nrap_D4  Nrap protein nucleotidyltransferase domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.4e-05      0.21      44      73 ..      88     119 ..      76     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.4e-05
                 -SS-EEEEEE-SGGGGT--SS---TT...... CS
     Nrap_D4  44 LPLsirsvqpaspalRytsvfppvpvkls..p 73 
                 L  +i++++p++pa+Ry +v p   v+ +  p
  CTQ29775.1  88 LGVEISDIAPVHPAFRYRAVAPNGIVENEvcP 119
                 56789****************99887555541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       306  (0.0170673); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1383.75
//
Query:       CTQ29776.1  [L=505]
Description: lysine tRNA synthetase, constitutive [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-81  274.4   0.2    1.4e-81  274.0   0.2    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    5.9e-15   55.0   0.1    1.1e-14   54.2   0.1    1.4  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    3.8e-05   23.3   0.9        0.1   12.1   0.1    2.9  3  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.0   0.2   2.3e-85   1.4e-81       1     313 [.     162     501 ..     162     502 .. 0.90

  Alignments for each domain:
  == domain 1  score: 274.0 bits;  conditional E-value: 2.3e-85
                  .CCHHHHTHHHHC.CSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEE CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   1 seelrlknryldl.rtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqi 97 
                  ++e r+++ryldl  +++ +k++++rs++++ +r+++  +gf+e+etP+++   +++ ar+F +++++ + +++ L+++p+lyl++l+v+g++rvf+i
   CTQ29776.1 162 DQEARYRQRYLDLiSNDESRKTFKVRSQILAGIRQFMVGRGFMEVETPMMQVIPGGASARPFITHHNALDLDMY-LRIAPELYLKRLVVGGFERVFEI 258
                  5799*********9*******************************************************88999.*********************** PP

                  EEEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTSEE-SSS-EEEEHHHHHHHHHTS..-SS--HHHH. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx. RF
  tRNA-synt_2  98 araFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrnskdlkkpfkrltykeaieklnei..gkdldkade. 192
                  +r+FR+E ++ ++++ EFt++e++m++++++d+++++e l+++l++++l ++ +  +     +  d+ kpf++lt++eai+k++ +    dld+ d  
   CTQ29776.1 259 NRNFRNEGISVRHNP-EFTMMELYMAYADYKDLIELTESLFRTLAQDILGNT-EVPYG---DQVFDFGKPFEKLTMREAIKKYRPEteMADLDNFDSa 351
                  ***************.********************************5444.44444...3445*****************8877552334433321 PP

                  HHHHH..........................HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCHH. CS
                  xxxxx..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  tRNA-synt_2 193 ralvk..........................keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeeleeklkskgld. 263
                  +a                              +  +p+f+t++Pae++p+++r++ + +++t++++++i g E+++G ++++d e + ++++++    
   CTQ29776.1 352 KAI-AesigikvekswglgrivteifeevaeAHLIQPTFITEYPAEVSPLARRNDVN-PEITDRFEFFIGGREIGNGFSELNDAEDQAQRFQDQVDAk 447
                  222.2466777888888888888888888888899*****************99999.9*********************************997767 PP

                  ....SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 264 ....eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                      +ea+  +++y++ale G+pp++Glg+G+dR+vml+++s+ Irdvi+FP +
   CTQ29776.1 448 aagdDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAM 501
                  89999***********************************************86 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.1   1.8e-18   1.1e-14       1      76 []      68     146 ..      68     146 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 1.8e-18
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET.....HHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr.....eeatklaenlkeGdvvrvtGrvkrrpggelelkveeiell 76 
                      V vaGr +++  r +gk++f++l+D  griq+++ r     + + +++++++ Gd++ ++G+++++++gel+++++e++ll
       CTQ29776.1  68 VAVAGRMMTR--RIMGKASFVTLQDVGGRIQLYVARddlaeGVYNDQFKKWDLGDIIAARGKLFKTKTGELSIHCTELRLL 146
                      789*******..****************************9999*********************************9986 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.26   1.5e+03      16      42 ..     184     210 ..     174     213 .. 0.81
   2 !   12.1   0.1   1.7e-05       0.1     103     171 ..     254     323 ..     251     360 .. 0.79
   3 !    8.5   0.0   0.00021       1.3     212     234 ..     473     495 ..     464     498 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.26
                   -SHHHHHHHHHHHHHHCTTCEESSTTS CS
  tRNA-synt_2d  16 lhpltkvleeikeiflelgfeevegpe 42 
                    ++ +++l  i+++++  gf eve p 
    CTQ29776.1 184 FKVRSQILAGIRQFMVGRGFMEVETPM 210
                   5667889999************99886 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.7e-05
                   EEEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--.HHHH.HHHHHHHHHHHCTSTEEEEEEECEETTEEE CS
  tRNA-synt_2d 103 kiisigrvfRrdavDathlaeFhqveglvvdenvs.ladl.kgvleellkklfgaevkvrfrpsyfpfteP 171
                   +++ i+r fR++ +  +h +eF+ +e  ++  +++ l +l   ++++l++++ g++ +v +  + f f +P
    CTQ29776.1 254 RVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKdLIELtESLFRTLAQDILGNT-EVPYGDQVFDFGKP 323
                   799***********************988765543233331345566666677776.77777777777776 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00021
                   EEEEEEHHHHHHHHHT-SSGHHH CS
  tRNA-synt_2d 212 fafGlGveRlamlkygieDiRel 234
                   +++G+G++R+ ml ++ + iR++
    CTQ29776.1 473 AGLGIGIDRMVMLFTNSHTIRDV 495
                   679******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3684.72
//
Query:       CTQ29777.1  [L=320]
Description: peptide chain release factor 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-56  191.7   3.0    2.3e-56  190.7   0.2    2.0  2  PCRF          PCRF domain
    8.8e-41  138.5   1.4    1.5e-40  137.7   1.4    1.4  1  RF-1          RF-1 domain
  ------ inclusion threshold ------
       0.01   15.9   0.9        4.9    7.2   0.2    2.5  2  TcpS          Toxin-coregulated pilus protein S
      0.041   14.5   2.5        5.9    7.5   0.5    2.5  2  DUF2408       Protein of unknown function (DUF2408)
        0.3   11.2   1.9        0.9    9.6   0.2    2.1  2  MCU           Mitochondrial calcium uniporter
       0.81   10.0   8.2        3.2    8.1   3.1    2.4  2  Tup_N         Tup N-terminal
        1.1    9.7   7.2        2.7    8.5   0.9    2.7  2  DUF4140       N-terminal domain of unknown function (DUF4140)
        2.8    8.3   8.7        3.5    8.0   0.1    3.2  3  BLOC1_2       Biogenesis of lysosome-related organelles compl
        6.3    6.8   6.5        0.3   11.1   0.8    1.8  2  Sugarporin_N  Maltoporin periplasmic N-terminal extension


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.7   0.2   1.2e-59   2.3e-56      17     192 ..       1     174 [.       1     175 [. 0.97
   2 ?    1.5   0.2      0.11   2.3e+02      60      80 ..     239     263 ..     207     299 .. 0.60

  Alignments for each domain:
  == domain 1  score: 190.7 bits;  conditional E-value: 1.2e-59
                 GTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT......-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTTSEEEEEEEE-SSTHH CS
        PCRF  17 vwedqekakklskelaeleeivealeeleealedleeakell.e.edeelaelaeeeleelekeleeleeelkklLlpkdendeknaileiraGaGGde 113
                 +w+++e+a++l ke ++le+iv++l+++++ led++ + +l+ e +dee  ++a +el++le++l +l  e++++++  +e+d+ +++l+i+aG+GG+e
  CTQ29777.1   1 MWNEPERAQALGKERSSLEAIVDTLDQMSQGLEDVAGLLDLAvEaDDEETFNEAVAELDTLEEKLAQL--EFRRMFS--GEYDSADCYLDIQAGSGGTE 95 
                 5999*********************************99888646889999999**************..*******..******************** PP

                 HHHHHHHHHHHHHHHHHTTT-EEEEEEEEESSS.SEEEEEEEEESTTHHHHHGGG-EEEEEEEE-TTSSS--EEEEEEE CS
        PCRF 114 aalfaedLlrmYtryaerkgwkvevldaseeeagGikevtleiegegaYgkLkfEsGvHRvqRvpetesqgrihTStat 192
                 a+++a++L+rmY r+ae +g+k+e++++se e+ Gik+vt++i g++aYg+L++E+GvHR++R ++++s gr+hTS+ +
  CTQ29777.1  96 AQDWASMLMRMYLRWAEARGFKTEIIEESEGEVAGIKSVTIKIIGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSS 174
                 ******************************9999******************************************976 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
                 ...-S-..-GG....GTHHHHHHHH CS
        PCRF  60 edeelaelaee....eleelekele 80 
                 +d+ +++++ +    e+++ ++e +
  CTQ29777.1 239 KDQAMKQMKAKlyelEMQKKNAEKQ 263
                 3333333322222112222222222 PP

>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   1.4   7.5e-44   1.5e-40       1     116 []     183     292 ..     183     292 .. 0.92

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 7.5e-44
                 SCCCCE--GGGEEEEEE---SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-.S.-S---S-- CS
        RF-1   1 deieieidekdleidtfrssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkkekkkigtgsse 99 
                 d+i+iei+++dl+id++r+sGaGGQ+VN+tesaVr+th+ptg +v +cq++Rsq+kN+++A++++kakl  +ele +k++++k+ ++++k++ig+gs  
  CTQ29777.1 183 DDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTG-LVTQCQNDRSQHKNKDQAMKQMKAKL--YELEMQKKNAEKQAMEDNKSDIGWGS-- 276
                 5899**************************************.8*************************..555666666677776778899*****.. PP

                 ECEEEECGCTTEEEETT CS
        RF-1 100 kiRtynkkpqsrvkdhr 116
                 +iR+y++ ++sr+kd+r
  CTQ29777.1 277 QIRSYVL-DDSRIKDLR 292
                 *******.99*****98 PP

>> TcpS  Toxin-coregulated pilus protein S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0035       6.9      16      48 ..      40      72 ..      35      77 .. 0.89
   2 ?    7.2   0.2    0.0025       4.9      22      54 ..     231     263 ..     222     285 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0035
        TcpS 16 sfnvladelevyennyksiesLknkleqLeLkk 48
                ++ v ad+ e++++ + +++ L  kl qLe+++
  CTQ29777.1 40 DLAVEADDEETFNEAVAELDTLEEKLAQLEFRR 72
                55699*************************976 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0025
        TcpS  22 delevyennyksiesLknkleqLeLkkkileve 54 
                 ++ + ++n+ ++++++k kl  Le++kk  e +
  CTQ29777.1 231 NDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQ 263
                 67788999999*****************88755 PP

>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1    0.0065        13      21      67 ..      37      81 ..      15     104 .. 0.75
   2 ?    7.5   0.5     0.003       5.9      25      73 ..     225     272 ..     211     314 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0065
     DUF2408 21 sLlslaakskaeeakeseevkeelkelkeeLkkieskrdeegkFkse 67
                +Ll la ++++e  ++ +e  +el+ l+e+L ++e +r  +g++ s 
  CTQ29777.1 37 GLLDLAVEADDE--ETFNEAVAELDTLEEKLAQLEFRRMFSGEYDSA 81
                356666666665..33444689****************999999765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.003
     DUF2408  25 laakskaeeakeseevkeelkelkeeLkkieskrdeegkFkseegkevv 73 
                 l+++ +++  +++++ ++ +k++k++L ++e ++++ +k + e++k+  
  CTQ29777.1 225 LVTQCQND-RSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDI 272
                 45555554.4556667999************999998888766665533 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.28   5.5e+02      34      74 ..      24      69 ..       7      75 .. 0.65
   2 ?    9.6   0.2   0.00045       0.9      47      89 ..     227     269 ..     180     278 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.28
                XXXXXXXXXX-SS.....SSSSTSSSSSHHHHHHHHHHHHH-SHHH CS
         MCU 34 rvkqlvkalesal.....nveeeqlkkereleekleelreeleple 74
                +++q+ + le++       ve  +++  +e+ ++l++l+e+l +le
  CTQ29777.1 24 TLDQMSQGLEDVAglldlAVEADDEETFNEAVAELDTLEEKLAQLE 69
                3333333333333555776677777777888888899999998887 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00045
                 SSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCCCGGGCHH CS
         MCU  47 nveeeqlkkereleekleelreelepleekkeeidekAerrtr 89 
                 +  ++++++++++++ +++++++l +le +k++ +++A +  +
  CTQ29777.1 227 TQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNK 269
                 444566778888899999*******************987655 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2     0.027        53       5      52 ..      24      69 ..      17      76 .. 0.70
   2 ?    8.1   3.1    0.0016       3.2      37      61 ..     239     263 ..     226     271 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.027
       Tup_N  5 lLdavkqEfdalsqeasslkaqkdeyelkiqsqiqElqqirqtlyeLe 52
                 Ld+  q  + ++  +  l  + d+ e  +++ ++El+++ ++l +Le
  CTQ29777.1 24 TLDQMSQGLEDVAG-LLDLAVEADD-EETFNEAVAELDTLEEKLAQLE 69
                55555555555555.3334444444.5669*****************9 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0016
       Tup_N  37 qiqElqqirqtlyeLeeahrkikqq 61 
                 + q ++q++ +lyeLe++ ++  +q
  CTQ29777.1 239 KDQAMKQMKAKLYELEMQKKNAEKQ 263
                 4567*************98876433 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.6     0.036        72      47      79 ..      36      70 ..      10      73 .. 0.74
   2 ?    8.5   0.9    0.0013       2.7      45      94 ..     214     263 ..     207     266 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.036
     DUF4140 47 atildvqvervpnreaeee..elkalraeleeled 79
                a +ld++ve + +++  e+  el++l+++l +le 
  CTQ29777.1 36 AGLLDLAVEADDEETFNEAvaELDTLEEKLAQLEF 70
                56778888887766666667668888888888775 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0013
     DUF4140  45 gaatildvqvervpnreaeeeelkalraeleeledelaaledelaaaear 94 
                  a++i+++ +  v++ ++++++ k  ++++++ +++l +le ++++ae++
  CTQ29777.1 214 SAVRITHIPTGLVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQ 263
                 45999999999999999999988899999999999999999999888887 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1    0.0017       3.5      70      93 ..      11      34 ..       6      36 .. 0.87
   2 ?    3.1   0.2     0.057   1.1e+02      57      78 ..      48      69 ..      40      70 .. 0.86
   3 ?    0.5   0.9      0.37   7.5e+02      48      73 ..     231     256 ..     218     272 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0017
     BLOC1_2 70 iekqvteLeeavseLDeyskeLEa 93
                + k+ ++Le++v+ LD++s+ LE+
  CTQ29777.1 11 LGKERSSLEAIVDTLDQMSQGLED 34
                6677789***************96 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.057
     BLOC1_2 57 yeelqpylqqidqiekqvteLe 78
                +e++++ + ++d +e+++++Le
  CTQ29777.1 48 EETFNEAVAELDTLEEKLAQLE 69
                5789999999999999999998 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.37
     BLOC1_2  48 kkleklnekyeelqpylqqidqiekq 73 
                 ++ ++ ++k++++++++ ++ ++e q
  CTQ29777.1 231 NDRSQHKNKDQAMKQMKAKLYELEMQ 256
                 45555555555555555555555544 PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.8   0.00015       0.3      19      38 ..      51      71 ..      49      71 .. 0.86
   2 ?   -3.8   0.6       6.8   1.4e+04      33      46 ..     251     264 ..     248     266 .. 0.47

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00015
  Sugarporin_N 19 sv.aaaasltiEaRLaaLEkr 38
                  ++ a a+++t+E++La+LE r
    CTQ29777.1 51 FNeAVAELDTLEEKLAQLEFR 71
                  566899*************65 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.8
  Sugarporin_N  33 aaLEkrLqeAeqra 46 
                     LE   + Ae +a
    CTQ29777.1 251 YELEMQKKNAEKQA 264
                   44554444454444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1985  (0.110714); expected 358.6 (0.02)
Passed bias filter:                      951  (0.0530426); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 2257.80
//
Query:       CTQ29778.1  [L=577]
Description: ssDNA exonuclease, 5'--_ 3'-specific [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-27   96.8   0.0    3.8e-27   95.4   0.0    1.8  2  DHHA1           DHHA1 domain
      7e-19   68.1   0.0    1.1e-18   67.4   0.0    1.4  1  RecJ_OB         RecJ OB domain
    2.8e-08   33.9   0.0      5e-08   33.1   0.0    1.4  1  DHH             DHH family
  ------ inclusion threshold ------
       0.14   12.1   0.2       0.28   11.2   0.2    1.5  1  Glyco_transf_4  Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.4   1.1e+04      56      78 ..      57      79 ..      51     107 .. 0.65
   2 !   95.4   0.0   8.4e-31   3.8e-27       1     137 [.     322     452 ..     322     453 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.4
                HHHHHHHHHTHGBT.TCEEEEEEE CS
       DHHA1 56 lgiaadklksklkk.pvivfvake 78
                ++ a+++l++ ++k   iv+v ++
  CTQ29778.1 57 VEKAVEMLHDAFQKgLHIVVV-GD 79
                566667777766663333333.33 PP

  == domain 2  score: 95.4 bits;  conditional E-value: 8.4e-31
                 HHHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHTCEEECTCEEEEEECHCCHHHHHHHHHHHHHHTHGBTTCEEEEEEEECTEEEEEEEESSHSS-HHHH CS
       DHHA1   1 leslneerkelekeleelkealaklkaeellekaeevkgvkvlvaevgeewdagalgiaadklksklkkpvivfvakeegdkvkvsarskkdgvdagel 99 
                 l++ln+ rke+e+ +    eal+ +++ e  ++     + +  +a ++++w++g++gi+a+++k+++++pvi+f+ + +g + k+s+rs++ g++++++
  CTQ29778.1 322 LDALNQTRKEIEQGM--QAEALTLCQQLERSAD-----TLPGGLAMYHPQWHQGVVGILASRIKERFHRPVIAFAPTGDG-TLKGSGRSIQ-GLHMRDA 411
                 789************..*********9998888.....99****************************************.*********9.******* PP

                 HHH...HHHHTTCCEEEETCEEEEEEEHCHHHHHHHHHHHH CS
       DHHA1 100 ake...aaaklgggGGGHdlAaGagipaekleealealeea 137
                 +++   +++ l++++GGH++AaG+++++ ++ee+++++ e+
  CTQ29778.1 412 LERldtLYPGLILKFGGHAMAAGLSLEEARFEEFQQRFGEL 452
                 ************************************99876 PP

>> RecJ_OB  RecJ OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   2.6e-22   1.1e-18       2     107 ..     469     572 ..     468     573 .. 0.94

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 2.6e-22
     RecJ_OB   2 DaeldlseiteelleelerlePfGkgnpePvfllknvkvesarivgkeknhlklkledes.gksleaiaFnlaekleelekgdkvdiaytleinefngr 99 
                 D++l + e+++e++++l+  +P+G+ +peP+f  ++ ++ ++r+vg+  +hlk+ +e  + g  l++iaFn    +   +   +v++ay+l+inef+g+
  CTQ29778.1 469 DGPLAAAEMSMEVAQMLRDAGPWGQMFPEPLFDGRF-RLLQQRLVGE--RHLKVMVEPVDgGPLLDGIAFNVDTSIWPDNGVREVQLAYKLDINEFRGN 564
                 899*********************************.**********..*******76655799********99998889999**************** PP

     RecJ_OB 100 etlqlrik 107
                 ++lql+i 
  CTQ29778.1 565 RSLQLIID 572
                 *****996 PP

>> DHH  DHH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.1e-11     5e-08       2      84 ..      74     201 ..      72     233 .. 0.71

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.1e-11
                 EEEE-ECSSSHHHHHH.HHHHHH.......................................CECS--TCGGCGCCHHCCCSEEEEEEE-S---S.... CS
                 xxxxxxxxxxxxxxxx.xxxxxx.......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
         DHH   2 ilivghknpDtDsigS.aialan.......................................llvDhneksqavegeakeeaedviiiDHHrlge.... 56 
                 i+   ++++D+D+++S a+ + +                                       ++vD++++s+a +++a + +  v+++DHH +ge    
  CTQ29778.1  74 IV--VVGDFDADGATStALSVLAlralgygnvsylvpnrfedgyglspevvdqahargaqmiMTVDNGISSHAGVDHAHALGIPVLVTDHHLPGEtlpa 170
                 44..59**********99999996666666666666666666666666666666666666655*******************************98887 PP

                 ..............S---SS--EEEE-SSS-HHHHHHHHHHH CS
                 ..............xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         DHH  57 ..............efetlapilflnepvgstaeivaellee 84 
                               +           ++  ++++++++l+ +
  CTQ29778.1 171 aeaivnpnlrdcdfP-----------SKSLAGVGVAFYLMLA 201
                 777754433333222...........2333677777776655 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   6.3e-05      0.28       3     107 ..      56     164 ..      54     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.3e-05
  Glyco_transf_4   3 GverhvleLaraLarrGheVtvvtpgddgpleeev....elvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrr 93 
                     Gve  v+ L+ a+++  h V+v  ++ dg++  +      +    + v ++ ++r+   +  ++ +  ++++ +   + + + +    a++  ++
      CTQ29778.1  56 GVEKAVEMLHDAFQKGLHIVVVGDFDADGATSTALsvlaLRALGYGNVSYLVPNRFEDGYGLSPEVVDQAHARGAQMIMTVDNGISSHAGVDHAH 150
                     9*************9888888887777777766667655344444445577889999999999***************99999999999999999 PP

  Glyco_transf_4  94 rlgiplVltvHgly 107
                     +lgip+ +t H+l 
      CTQ29778.1 151 ALGIPVLVTDHHLP 164
                     9**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4413.48
//
Query:       CTQ29779.1  [L=237]
Description: protein disulfide isomerase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-28   97.5   0.0    8.7e-28   96.9   0.0    1.3  1  Thioredoxin_2  Thioredoxin-like domain
    3.3e-15   55.3   0.0    8.8e-15   53.9   0.1    1.6  2  DsbC_N         Disulfide bond isomerase protein N-terminus
    2.6e-07   30.9   0.0      0.026   14.7   0.0    2.4  2  Thioredoxin_4  Thioredoxin
    3.8e-07   30.1   0.1      0.017   14.9   0.0    2.5  2  DSBA           DSBA-like thioredoxin domain
     0.0082   16.1   0.0        1.2    9.2   0.0    2.4  2  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
       0.15   12.3   0.0        1.1    9.5   0.0    2.4  3  Glutaredoxin   Glutaredoxin
       0.17   11.7   0.1        1.2    8.9   0.0    2.2  3  TraF           F plasmid transfer operon protein


Domain annotation for each model (and alignments):
>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9   0.0   3.4e-31   8.7e-28       3     109 .]     105     227 ..     103     227 .. 0.97

  Alignments for each domain:
  == domain 1  score: 96.9 bits;  conditional E-value: 3.4e-31
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkel..ddvtvrvllfp...lkpsfepkavaiwcakekkkafkd...............ieenvelarkygv 78 
                     ++++v++vftd +C+yC+kl+++++++   ++tvr+l+fp   l++++e+ + aiwcak+++ka++d               i++++ l+ ++gv
     CTQ29779.1 105 PKEQHVITVFTDITCGYCHKLHEQMSDYnaLGITVRYLAFPrqgLQSQAEQDMKAIWCAKDRNKALDDamngkgvqpascsvdIAKHYTLGVQMGV 200
                    6899************************9999**************************************************************** PP

  Thioredoxin_2  79 rgtPtivfldgkeivarlpGyvpaeeleall 109
                    +gtP++v+ +g     +lpGy  ++el+a l
     CTQ29779.1 201 NGTPAMVLSNGM----VLPGYQGPKELKAFL 227
                    ************....***********9976 PP

>> DsbC_N  Disulfide bond isomerase protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.1   3.4e-18   8.8e-15       1      52 [.      27      76 ..      27      77 .. 0.96
   2 ?   -2.4   0.0       1.3   3.4e+03      31      44 ..      98     111 ..      94     112 .. 0.81

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 3.4e-18
                HHHHHTTT..--S----B-SSTTEE--EETTEE-EEESSSS-EE-S-----T CS
      DsbC_N  1 kaaLekllpnlkvesvspspipGLyEVviggqvlYtdadgkyliqGnlydlk 52
                k++L+kl+  ++ ++++psp++G+ +V ++++vlY+++dgk++iqG++yd+ 
  CTQ29779.1 27 KQSLAKLG--VQSTDIQPSPVSGMSTVLTDSGVLYVTDDGKHIIQGPMYDVS 76
                79999999..****************************************85 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
                 TEE-EEESSSS-EE CS
      DsbC_N  31 gqvlYtdadgkyli 44 
                 + ++Y  ++ +++i
  CTQ29779.1  98 EMIVYKAPKEQHVI 111
                 56999999999998 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   1.7e-05     0.045      10      36 ..     104     130 ..      96     139 .. 0.86
   2 !   14.7   0.0     1e-05     0.026     103     166 .]     165     229 ..     137     229 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.7e-05
                    -TT-SEEEEEEE-TT-HHHHHHHHHHH CS
  Thioredoxin_4  10 npdApvtvieyedlrCphCakfeeeve 36 
                    +p+ ++++++++d +C +C k++e++ 
     CTQ29779.1 104 APKEQHVITVFTDITCGYCHKLHEQMS 130
                    688899******************986 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1e-05
                    H.....HHHHHTS-------HHHHHHHHHHHHHHT--SS-EEEE.TTEEE-TT--HHHHHHHHT- CS
  Thioredoxin_4 103 aaealdkdekfeacleeekldalveaeskeakkagiestPtfii.ngekveepqtyeelkalida 166
                    +++++ +d+   + ++  + + ++++  +   ++g+++tP +++ ng ++ ++q ++elka++d+
     CTQ29779.1 165 DRNKALDDAMNGKGVQPASCSVDIAKHYTLGVQMGVNGTPAMVLsNGMVLPGYQGPKELKAFLDE 229
                    23444444444557999999999*******************999*****************995 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0     3e-05     0.076       2      38 ..     111     145 ..     110     168 .. 0.85
   2 !   14.9   0.0   6.8e-06     0.017     152     192 ..     187     227 ..     168     228 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3e-05
                 EEEEEBTTBHHHHHHHHHHHHHHHHCCTEEEEEEE-S CS
        DSBA   2 vdeffDvlCPyCylgkerleklaarspdvkvvlrpfe 38 
                 + +f D+ C+yC+   e+++ + a    ++v++ +f+
  CTQ29779.1 111 ITVFTDITCGYCHKLHEQMSDYNALG--ITVRYLAFP 145
                 89*******************99776..999988887 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 6.8e-06
                 HHHHHHHHHHHTT-SSSSEEEE.TTCEEEESSSSHHHHHHHH CS
        DSBA 152 avrentaaaqslgvtGvPtvvv.dgkrmvfGadrldtladal 192
                 +++++  +++++gv+G+P++v+ +g  +++G + ++ l+  l
  CTQ29779.1 187 DIAKHYTLGVQMGVNGTPAMVLsNGM-VLPGYQGPKELKAFL 227
                 68899999**************5665.999999999888765 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.011        27      17      40 ..     106     129 ..      91     136 .. 0.76
   2 !    9.2   0.0   0.00047       1.2      53      97 ..     183     226 ..     156     232 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.011
                  TSSEEEEEEE-TTSHHHHCHHHHH CS
  Thioredoxin  17 ekklvlveFyApwCghCkalaPel 40 
                  ++++v+  F+   Cg C +l  ++
   CTQ29779.1 106 KEQHVITVFTDITCGYCHKLHEQM 129
                  4667777788889*****998665 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00047
                  EEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHH CS
  Thioredoxin  53 lakvdvdenedlakkyevegiPtlklfkngkevkkyegarekekl 97 
                   + vd+ ++ +l  +++v+g P++ ++ ng     y+g +e +++
   CTQ29779.1 183 SCSVDIAKHYTLGVQMGVNGTPAM-VLSNGMVLPGYQGPKELKAF 226
                  5789*******************9.67899999999999985554 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.89   2.3e+03      11      25 ..      22      36 ..      14      41 .. 0.83
   2 ?    9.5   0.0   0.00043       1.1       1      23 [.     111     133 ..     111     156 .. 0.84
   3 ?   -3.5   0.0         5   1.3e+04      15      23 ..     223     231 ..     220     233 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.89
                  HHHHHHHHHHHTTGG CS
  Glutaredoxin 11 yCkkakrlLkelgvk 25
                  +++++k+ L +lgv+
    CTQ29779.1 22 DSAAIKQSLAKLGVQ 36
                  688999999999987 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00043
                   EEEEESTSSHHHHHHHHHHHHTT CS
  Glutaredoxin   1 vvlftkptCpyCkkakrlLkelg 23 
                   +++ft  tC+yC+k  + + +++
    CTQ29779.1 111 ITVFTDITCGYCHKLHEQMSDYN 133
                   799***********998886666 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 5
                   HHHHHHHTT CS
  Glutaredoxin  15 akrlLkelg 23 
                    k++L+e++
    CTQ29779.1 223 LKAFLDEHK 231
                   688999887 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00047       1.2      91     166 ..      68     143 ..      54     161 .. 0.71
   2 ?   -1.2   0.0      0.59   1.5e+03      33      58 ..     150     175 ..     140     190 .. 0.82
   3 ?   -0.4   0.0      0.33   8.4e+02     186     199 ..     196     209 ..     180     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00047
        TraF  91 lanPeLdytlrrPvsnlarkvlndarkeekeaal.kklakeygLlfFyrgkcpyceaqapilqafadkyglevraVs 166
                 ++ P +d +   Pv+   + +l + +   +e ++ k+ ++++ + +F + +c+yc+++ + +++ +   g++vr+ +
  CTQ29779.1  68 IQGPMYDVSGAQPVNVTNQLLLGKLNALSNEMIVyKAPKEQHVITVFTDITCGYCHKLHEQMSDYN-ALGITVRYLA 143
                 66677777777788777555555555555555552445677****************998887753.4666666655 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.59
        TraF  33 tseesatesaaelrkeleelldkAil 58 
                 +s+  ++++a +  k  +++ld+A++
  CTQ29779.1 150 QSQAEQDMKAIWCAKDRNKALDDAMN 175
                 67788899999999999999999986 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.33
        TraF 186 arlgvkrtPalvlv 199
                  ++gv+ tPa+vl 
  CTQ29779.1 196 VQMGVNGTPAMVLS 209
                 589********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2005.53
//
Query:       CTQ29780.1  [L=298]
Description: site-specific tyrosine recombinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-56  189.3   0.0    6.5e-56  188.8   0.0    1.2  1  Phage_integrase  Phage integrase family
      1e-25   89.8   2.4      1e-25   89.8   2.4    2.3  2  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
    2.9e-07   30.9   1.5    1.3e-06   28.7   0.1    2.5  2  Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.8   0.0   1.1e-59   6.5e-56       3     171 ..     113     284 ..     111     285 .. 0.98

  Alignments for each domain:
  == domain 1  score: 188.8 bits;  conditional E-value: 1.1e-59
                      HHHHHHHHHHHCCGC..HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHH...CHCC CS
  Phage_integrase   3 ltedeverllaalee..slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellska...leea 91 
                      l e +verll+a     +l++rdk++le+ly+tGlR+sEl++L+++d++l++gv++v   +gKg+ker vpl+eea+ +++++l++    l + 
       CTQ29780.1 113 LSEAQVERLLQAPLVeqPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRV---VGKGNKERLVPLGEEAVLWVENYLEYGrpwLLNG 203
                      8899*******987778****************************************...********************************** PP

                      TTTSBSSBETTSSB--HHHHHHHHHHHHHHCT-S.SC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCCH CS
  Phage_integrase  92 eksellfaskrgkplsrqtvrkafkraveeagie.kpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthvak 171
                        s++lf+s+r+++++rqt+++++k+++  agi+ ++l+pH lRh+fat+Ll++g+dlrvvq+llGHs++sttqiYthva 
       CTQ29780.1 204 VASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDsEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAT 284
                      ******************************************************************************985 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   2.4   1.7e-29     1e-25       1      84 []       8      90 ..       8      90 .. 0.99
   2 ?    0.3   0.1      0.15   9.1e+02      20      58 ..     255     292 ..     252     297 .. 0.79

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 1.7e-29
                     HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS----------HHHHHHHHHHHHHHHHHTT CS
  Phage_int_SAM_1  1 leqfleyLikerglspnTlraYrrdLrrflkflaergkesleqlttedvraflaeleeeglsatslarrlsalrsFfqflvreg 84
                     +eqfl+ L++er+l++nTl+aYrrdL +++++l++ ++ sl++++ +d++a lae+ + g++ats+ar lsa+r+Ffq l+re+
       CTQ29780.1  8 IEQFLDALWLERNLAENTLSAYRRDLTMLVEWLHH-RGLSLASVGSDDLQALLAERQSGGYKATSTARLLSAVRRFFQHLYREK 90
                     79*********************************.**********************************************97 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.15
                      HHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS--- CS
  Phage_int_SAM_1  20 raYrrdLrrflkflaergkesleqlttedvraflaelee 58 
                      +++  dLr ++  l +    s +q+ t+   + l++l++
       CTQ29780.1 255 LNHGADLRVVQMLLGH-SDLSTTQIYTHVATERLRQLHQ 292
                      5778899999999999.8888888888888777777776 PP

>> Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   2.2e-10   1.3e-06       1      82 [.       7      90 ..       7      92 .. 0.94
   2 ?    0.5   0.1      0.14   8.4e+02      16      39 ..     217     239 ..     211     289 .. 0.73

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.2e-10
  Phage_int_SAM_4  1 Llerfrealrl.aglserTiksYlsaikrflrflkkk..apeeltkedieaYlnyLanerklsastqknalnalsffykkvlere 82
                     L+e+f++al l ++l+e+T  +Y + ++ ++++l+++  + ++++ +d++a l+  + +  ++a++  + l+a + f++++ +++
       CTQ29780.1  7 LIEQFLDALWLeRNLAENTLSAYRRDLTMLVEWLHHRglSLASVGSDDLQALLAERQ-SGGYKATSTARLLSAVRRFFQHLYREK 90
                     789******8889**********************888899**************99.**********************87765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.14
  Phage_int_SAM_4  16 erTiksYlsaikrflrflkkkape 39 
                      + T+++ ++ ik++++       e
       CTQ29780.1 217 QMTRQTFWHRIKHYAVLAG-IDSE 239
                      6799999999999987665.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2225.20
//
Query:       CTQ29781.1  [L=173]
Description: flavodoxin 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-25   90.2   0.0    1.6e-25   90.0   0.0    1.0  1  Flavodoxin_1  Flavodoxin
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.028   14.1   0.0    1.6  1  Flavodoxin_3  Flavodoxin domain


Domain annotation for each model (and alignments):
>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   1.8e-29   1.6e-25       1     143 []       5     160 ..       5     160 .. 0.95

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 1.8e-29
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSC.GGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEE CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydes.lseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglG 96 
                   ++YgS t+ te+ A+++++++g     +++v+l++++++ +  + ++++l+++++T+  G+++       +d+++ + d+l+  +l+g+ +a++g G
    CTQ29781.1   5 LFYGSSTCYTEMAAEKIRDIIG-----PELVTLHNLKDDsPALMSQYDVLILGIPTWDFGEIQ-------EDWEAVW-DQLDTLNLEGKIVALYGMG 88 
                   69********************.....466677777666689*********************.......8999999.88999************** PP

                   CTTSSS..TTHHHHHHHHHHHHTTCEEES......................SSEEEETTST.HGHHHHHHHH CS
  Flavodoxin_1  97 dsayen..FcaagkkldekleelGaerll......................kllegdednq.egqeeafrkW 143
                   d+ +++  F +a ++l++kl  +G+++++                      ++l++de+nq ++ +e++++W
    CTQ29781.1  89 DQLGYGewFLDALGMLHDKLATKGVKFVGywptegyeftspkpviadgqlfVGLALDETNQyDLSDERIQSW 160
                   ***************************************************99******************9 PP

>> Flavodoxin_3  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.1e-06     0.028       2      66 ..       5      72 ..       4     123 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-06
  Flavodoxin_3  2 ilysSltGNTkkvAeaikealee.ekeivsikeakek.veeadvvfvGfwv.dkgtadeealkfletl 66
                  ++y S+t  T++ Ae+i++ +     +++++k+ + + ++++dv+++G+ + d g+ +e+ + +  +l
    CTQ29781.1  5 LFYGSSTCYTEMAAEKIRDIIGPeLVTLHNLKDDSPAlMSQYDVLILGIPTwDFGEIQEDWEAVWDQL 72
                  589******************883455566665555599*********86537788887776665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1361.29
//
Query:       CTQ29782.1  [L=136]
Description: hypothetical protein CH1034_290015 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-55  186.2  10.7    2.3e-55  186.1  10.7    1.0  1  Cpta_toxin  Membrane-bound toxin component of toxin-antitoxin
  ------ inclusion threshold ------
      0.017   14.7   1.3      0.026   14.1   1.3    1.3  1  PMT         Dolichyl-phosphate-mannose-protein mannosyltransf


Domain annotation for each model (and alignments):
>> Cpta_toxin  Membrane-bound toxin component of toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.1  10.7   2.6e-59   2.3e-55       1     130 []       1     130 [.       1     130 [. 0.99

  Alignments for each domain:
  == domain 1  score: 186.1 bits;  conditional E-value: 2.6e-59
  Cpta_toxin   1 malwkcdlrvswrtqllsllvygllalliLlapwPedyallwllllllvvfecvrsqrkikkrqGelvlladnrlrWkkeeWqivkkpwllrlGvllvl 99 
                 m+lw++dlr+swr+q++sll++g++a+l+Ll+pwP +y+++wllll+lvvf+cvrsqr+i++r+Ge++ll+d+rlrW+++eW+i+ +pw++++G+ll+l
  CTQ29782.1   1 MVLWQSDLRISWRAQWFSLLLHGVVAALVLLVPWPLSYTPIWLLLLSLVVFDCVRSQRRIHARRGEIKLLTDSRLRWQNAEWEILGTPWVINSGMLLRL 99 
                 9************************************************************************************************** PP

  Cpta_toxin 100 rsakgkkrkrlWlaaDsmseeewrqlrqlll 130
                 r++++++ ++lWlaaDsm++ ewr+lr+l+l
  CTQ29782.1 100 RHVDTRRGQHLWLAADSMDAGEWRDLRRLVL 130
                 ****************************985 PP

>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.3   2.9e-06     0.026     160     198 ..      11      49 ..       1      61 [. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.9e-06
         PMT 160 fsrswwlwllltgvalglavsvKwvglftvllvgllliw 198
                  +r++w++lll gv  +l+++v w++ +t ++++ll ++
  CTQ29782.1  11 SWRAQWFSLLLHGVVAALVLLVPWPLSYTPIWLLLLSLV 49 
                 6899*************************9999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1172.73
//
Query:       CTQ29783.1  [L=88]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-25   86.7   0.4    8.4e-25   86.5   0.4    1.0  1  Sdh5      Flavinator of succinate dehydrogenase
  ------ inclusion threshold ------
       0.04   13.6   0.0      0.046   13.4   0.0    1.1  1  RE_XamI   XamI restriction endonuclease
       0.15   11.5   0.0       0.17   11.3   0.0    1.1  1  GP88      Gene product 88


Domain annotation for each model (and alignments):
>> Sdh5  Flavinator of succinate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.4   1.4e-28   8.4e-25       1      73 []       6      76 ..       6      76 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 1.4e-28
                HHHHHHHH.--SSHHHHHTTTTHHHHHTTT--HHHHHHHHHHHTS--HHHHHHHHT-.---S-HHHHHHHHHH CS
        Sdh5  1 raRllyrsrrRGmlElDllLgrFaekhlatlseeeldaferLLdleDpdLldwltgrkeepedaelaallekl 73
                +aR+++++ rRGm+ElD+ +++F+e +++tls+++++ f rLL+ +DpdL++wl+++  +p+dael+++++++
  CTQ29783.1  6 KARIHWAC-RRGMRELDISIMPFFEYEYDTLSDADKQLFIRLLENDDPDLFNWLMNH-GKPADAELQRMVTLI 76
                58******.************************************************.***********9876 PP

>> RE_XamI  XamI restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.7e-06     0.046      67     105 ..      39      77 ..      23      81 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.7e-06
     RE_XamI  67 lrkvaeiilrlaDrdiFtWleeerepteaeieraaviva 105
                  ++++  +l   D+d F Wl ++ +p +ae +r  +++ 
  CTQ29783.1  39 DKQLFIRLLENDDPDLFNWLMNHGKPADAELQRMVTLIQ 77 
                 555555566678*********************988765 PP

>> GP88  Gene product 88
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.8e-05      0.17     128     157 ..      41      70 ..      27      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.8e-05
        GP88 128 srfkrlvepdaPenflWvyslGGkedalld 157
                 + f rl+e+d P+ f W++  G   da+l+
  CTQ29783.1  41 QLFIRLLENDDPDLFNWLMNHGKPADAELQ 70 
                 5799*******************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 673.20
//
Query:       CTQ29784.1  [L=327]
Description: enzyme component involved in 2-methylthio-6-iodeadenosine formation [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-10   38.7   0.0    2.3e-09   37.0   0.0    1.7  2  GCV_T     Aminomethyltransferase folate-binding domain


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   1.3e-13   2.3e-09      52     159 ..      31     137 ..      26     170 .. 0.88
   2 ?   -0.7   0.0     0.041   7.4e+02      98     125 ..     155     182 ..     149     201 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.3e-13
       GCV_T  52 evsGpdaaalLqrlltndisklkpgkatytlllnedGgvidDlivarldedefllvvnaankekdlawlekaaekkdldvevedvteelallalqGPka 150
                  +sGpd++++Lq  +t+d+s+l + +  +++ ++ +G + + l v+r + + f ++ + + ++  l  l+k+a    ++v++   +++l ll ++G +a
  CTQ29784.1  31 TISGPDSEKYLQGQITADVSHLTDAQHLLAAHCDAKGKMWSNLRVFRRE-GGFAWIERRSLRDAQLTELKKYAV--FSKVTIAA-NDDLVLLGVAGFQA 125
                 589**********************************************.7********************999..99999999.788*********** PP

       GCV_T 151 revlskll...g 159
                 r  l++l+   +
  CTQ29784.1 126 RAALAPLFaalP 137
                 *******94431 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.041
       GCV_T  98 rldedefllvvnaankekdlawlekaae 125
                 ++  ++fllv++ ++++++ + l+ +a+
  CTQ29784.1 155 EHPGERFLLVTDVDTANRVTDALRGEAQ 182
                 566689999*999999999999988554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2463.32
//
Query:       CTQ29785.1  [L=219]
Description: putative hemolysin, inner membrane subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-39  134.8  20.2    4.1e-39  134.6  20.2    1.0  1  HlyIII          Haemolysin-III related
  ------ inclusion threshold ------
        1.8    8.3  16.1       0.68    9.7   5.2    2.6  3  Claudin_2       PMP-22/EMP/MP20/Claudin tight junction
        6.2    5.1   9.0        6.6    5.0   9.0    1.2  1  SID-1_RNA_chan  dsRNA-gated channel SID-1


Domain annotation for each model (and alignments):
>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6  20.2   6.9e-43   4.1e-39       2     224 .]      12     209 ..      11     209 .. 0.94

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 6.9e-43
      HlyIII   2 slhnEtlniwtHllgailfivlailllslaevkensklakvvvlvfllgallcllcSalyHtlsihseeklrkffaklDysgIslliagsylplilyal 100
                 sl +E+ n+++H++g+++ iv ++lll++a+ ++ s++a +++ +++ ++++++l+S+lyH   i ++ +++++++k+D+++I+lliag+y+p++l+ l
  CTQ29785.1  12 SLAEEVANSISHGIGLVFGIVGLVLLLVQAADTNASATAIASYSLYGGSMIMLFLASTLYHA--IPHQ-RAKQWLKKFDHCAIYLLIAGTYTPFLLVGL 107
                 6789***************999999999887777699*************************..6556.9***************************** PP

      HlyIII 101 akapkagllylslilalgvlgiisklvplfsrpearplravlfillgllgvipllhlllvltqlgeaaelalvllvlggvlylvGavfYalrvPErlkp 199
                  +   +   ++++i+ l++lgi++kl+ +    ++++l+ v ++ +g+l++i + +l++ l+  g      ++ll++ggv+y +G++fY+++       
  CTQ29785.1 108 NS--PLAKGLMIVIWSLALLGILFKLTIA---HRFKILSLVTYLTMGWLSLIVVYQLAVKLAVGG------VTLLAVGGVVYSLGVIFYVCK------R 189
                 55..799999*******************...9***********************999999777......*********************......7 PP

      HlyIII 200 gkfdivghsHqiFHvfvvlgalfhy 224
                  ++     +H+i+H fv+ g+++h+
  CTQ29785.1 190 IPY-----NHAIWHGFVLGGSVCHF 209
                 777.....****************6 PP

>> Claudin_2  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.3   0.00096       5.7      98     146 ..      25      74 ..      11      90 .. 0.73
   2 ?    9.7   5.2   0.00011      0.68      94     146 ..     136     188 ..     108     194 .. 0.88
   3 ?   -3.2   0.2         1   6.1e+03     129     144 ..     201     216 ..     199     218 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00096
   Claudin_2  98 Lslvlivlavvlgllallkqsvlllkaagilfllag.vlgllavvvfies 146
                 ++lv+ ++++vl+l+ + ++++ +   a++ +  ++ ++++la  +++  
  CTQ29785.1  25 IGLVFGIVGLVLLLVQAADTNASATAIASYSLYGGSmIMLFLASTLYHAI 74 
                 89********************9877776555544424555555555544 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00011
   Claudin_2  94 vlliLslvlivlavvlgllallkqsvlllkaagilfllagvlgllavvvfies 146
                  + iLslv+ ++  +l l+ + + +v l + + +l++++gv+  l+v+ ++++
  CTQ29785.1 136 RFKILSLVTYLTMGWLSLIVVYQLAVKLAVGGVTLLAVGGVVYSLGVIFYVCK 188
                 3789*****************9999999999999999*************987 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1
   Claudin_2 129 fllagvlgllavvvfi 144
                 +l ++v+ +la+ ++i
  CTQ29785.1 201 VLGGSVCHFLAIYLYI 216
                 4678888888888776 PP

>> SID-1_RNA_chan  dsRNA-gated channel SID-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   9.0    0.0011       6.6     328     436 ..      57     166 ..      19     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0011
  SID-1_RNA_chan 328 mgvalimegilsacyhvCPnksnfqFdtsfmyviavlcmlklyqkRhpdinasaysafallavvillgvigvlegknkfw..ilfsiihllatll 420
                      g  +im  ++s++yh  P++ + q+   f    + l++   y      ++ ++  a  l++v+  l+++g+l++ +++    ++s++  l++ +
      CTQ29785.1  57 YGGSMIMLFLASTLYHAIPHQRAKQWLKKFDHCAIYLLIAGTYTPFL-LVGLNSPLAKGLMIVIWSLALLGILFKLTIAHrfKILSLVTYLTMGW 150
                     5789*********************9999999999999999999877.78888999999***************76633345899999******* PP

  SID-1_RNA_chan 421 lslqiyymgrwkldvg 436
                     lsl ++y   +kl+vg
      CTQ29785.1 151 LSLIVVYQLAVKLAVG 166
                     *******888888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1711.32
//
Query:       CTQ29786.1  [L=136]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1061.51
//
Query:       CTQ29787.1  [L=103]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-15   55.6   0.0    7.7e-15   55.4   0.0    1.0  1  ASCH      ASCH domain
    0.00045   20.2   0.1    0.00076   19.5   0.1    1.6  1  DUF3850   Domain of unknown function (DUF3850)
  ------ inclusion threshold ------
       0.14   12.0   0.0       0.22   11.4   0.0    1.3  1  SH3_9     Variant SH3 domain


Domain annotation for each model (and alignments):
>> ASCH  ASCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   1.3e-18   7.7e-15       1     103 [.       6     100 ..       6     103 .] 0.90

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.3e-18
                 EEE-TTHHHHHHTTS--EEEESSTTTGGGT-CEEEEEECCCCTSEEEEEEEEEEEEEEHHHHHHHHHCHCC---HCHHHHHHHCCHHHHHCCEEEEEEE CS
        ASCH   1 lsfhqelaslivsGkKtaeirvwdeelpkvrgdllilaalkptgralgivevtkvevkpfeevteehalkegesleewrevheefyeeeseeyedelvv 99 
                 ++f q++ ++i++G+Kt++ir+  e++ k  gd+l +    +++ +++ + vt   +++++ +te+ha++e+++l ++r+v++++y++es+      ++
  CTQ29787.1   6 ITFFQRFQDDILAGRKTITIRDAAESHFKP-GDVLRVGRY-EDDGYFCTIAVTATSTVTLDTLTEQHAQQENMTLGQLRQVISDIYPGESQ------FY 96 
                 5899*************************5.888888444.59*********************************************986......66 PP

                 EEEE CS
        ASCH 100 veef 103
                 v+ef
  CTQ29787.1  97 VIEF 100
                 6666 PP

>> DUF3850  Domain of unknown function (DUF3850)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   1.3e-07   0.00076       9      50 ..      11      53 ..       5      98 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.3e-07
     DUF3850  9 eyfeaVvsGkKtfeirk.nDrdyqvGDlLvLkeideedgeytG 50
                 + +++++G+Kt  ir   + +++ GD+L+  +++++    t+
  CTQ29787.1 11 RFQDDILAGRKTITIRDaAESHFKPGDVLRVGRYEDDGYFCTI 53
                45579***********97899*************985433344 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.7e-05      0.22       8      32 ..      26      50 ..      24      59 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.7e-05
       SH3_9  8 reddeLsLqrGDvitvieesedgWl 32
                r+++e ++ +GDv++v + ++dg++
  CTQ29787.1 26 RDAAESHFKPGDVLRVGRYEDDGYF 50
                7889999**********99999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 834.19
//
Query:       CTQ29788.1  [L=242]
Description: putative regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-15   57.3   0.1    7.9e-15   54.6   0.0    2.3  3  HTH_6          Helix-turn-helix domain, rpiR family
    9.9e-14   51.3   0.0    1.6e-13   50.6   0.0    1.3  1  SIS            SIS domain
    0.00035   20.3   0.0    0.00076   19.2   0.0    1.5  1  HTH_IclR       IclR helix-turn-helix domain
    0.00037   20.0   0.0    0.00067   19.2   0.0    1.4  1  HTH_24         Winged helix-turn-helix DNA-binding
    0.00071   19.3   0.0     0.0018   18.1   0.0    1.7  1  LacI           Bacterial regulatory proteins, lacI family
     0.0017   17.8   0.1     0.0026   17.2   0.1    1.2  1  RepL           Firmicute plasmid replication protein (RepL)
     0.0035   17.3   0.0     0.0086   16.0   0.0    1.6  1  HTH_Crp_2      Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
       0.01   16.0   0.0      0.025   14.8   0.0    1.6  1  HTH_17         Helix-turn-helix domain
      0.012   15.4   0.0      0.024   14.5   0.0    1.5  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.016   15.2   0.0      0.036   14.0   0.0    1.6  1  HTH_11         HTH domain
      0.018   14.9   0.1      0.036   14.0   0.1    1.5  1  TrmB           Sugar-specific transcriptional regulator TrmB
       0.02   14.8   0.0      0.051   13.5   0.0    1.7  1  MarR           MarR family
      0.022   14.8   0.1        3.2    7.8   0.0    2.2  2  SIS_2          SIS domain
      0.045   13.4   0.3       0.15   11.7   0.0    2.0  2  HTH_50         Helix-turn-helix domain
      0.075   13.1   0.0       0.16   12.1   0.0    1.5  1  HTH_3          Helix-turn-helix
      0.096   12.3   0.0       0.19   11.4   0.0    1.5  1  GntR           Bacterial regulatory proteins, gntR family
       0.12   12.2   0.1       0.29   11.0   0.1    1.6  1  TetR_N         Bacterial regulatory proteins, tetR family
       0.12   11.8   0.2       0.55    9.7   0.0    2.2  2  HTH_Tnp_ISL3   Helix-turn-helix domain of transposase family 
       0.14   12.0   0.0       0.33   10.8   0.0    1.6  1  HTH_23         Homeodomain-like domain
       0.15   11.8   0.0       0.32   10.8   0.0    1.5  1  HTH_38         Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   8.8e-18   7.9e-15      13      75 ..       9      71 ..       4      73 .. 0.92
   2 ?   -1.0   0.0         2   1.8e+03      42      66 ..      76     100 ..      75     104 .. 0.84
   3 ?   -2.6   0.0       6.3   5.7e+03      38      57 ..     157     178 ..     153     181 .. 0.67

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 8.8e-18
                ---HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH--HHHHHHH CS
       HTH_6 13 kltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselklaLakela 75
                +l++ e  +  y+ ++ dk+++++i++lA+aa+vS  t++rf++kL  +G+se++++ + +l 
  CTQ29788.1  9 SLNNLEMMVYHYVIKNRDKVMYMTIRELAEAAGVSTTTVLRFCRKLQCEGYSEFRVRFKLYLE 71
                6888899999**********************************************9987775 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2
                 HHTT--HHHHHHHH---S-SSHHHH CS
       HTH_6  42 kaaavSeativrfakkLGfkGFsel 66 
                 ++a+++ + i+ f k+     F el
  CTQ29788.1  76 QQANIGASEIMSFFKSVNNDEFDEL 100
                 6899*******99999877777765 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 6.3
                 HHHHHHTT--HHH..HHHHH-- CS
       HTH_6  38 kalAkaaavSeat..ivrfakk 57 
                 +alA  ++vS  t  i+rfa +
  CTQ29788.1 157 NALAIVLSVSGETeeILRFASQ 178
                 6777778888654448888765 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   1.8e-16   1.6e-13       3     122 ..     109     224 ..     107     231 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 1.8e-16
                 CTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEE CS
         SIS   3 akakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadla 101
                   ++ri+++GaGts+a+ak++a+ +  +g++  +++d +  ++   + + ++ l i++s sget + ++ a + +  + k+ +IT++++s la+ ad +
  CTQ29788.1 109 LASERIIFVGAGTSGALAKYGARFFSNVGKFSNHIDDPYFPVT---NDMARNALAIVLSVSGETEEILRFASQFSLHHCKVMSITSHEHSRLAKLADFN 204
                 5689*********************************999555...5999************************************************* PP

                 EEEEEECHCSSSHCHHHHHHH CS
         SIS 102 lyinaepetlvastksltaql 122
                 l  +++     + ++ +t+q 
  CTQ29788.1 205 LSWHVPQTR-IGGVYDITTQI 224
                 *99988877.66666666665 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   8.5e-07   0.00076      19      47 ..      31      59 ..      22      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 8.5e-07
                -BHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
    HTH_IclR 19 ltlselArrtglpkStvhRlLqtLvelGy 47
                +t++elA+++g++ +tv R+++ L+ +Gy
  CTQ29788.1 31 MTIRELAEAAGVSTTTVLRFCRKLQCEGY 59
                89***********************9998 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   7.4e-07   0.00067      18      46 ..      31      59 ..      30      59 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 7.4e-07
      HTH_24 18 isqreLAerlglSpstvnrrlkrLeeeGl 46
                +++reLAe+ g+S +tv+r  ++L+ eG+
  CTQ29788.1 31 MTIRELAEAAGVSTTTVLRFCRKLQCEGY 59
                89**********************87776 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     2e-06    0.0018       1      19 [.      32      50 ..      32      54 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2e-06
                -HHHHHHHCTS-HHHHHHH CS
        LacI  1 tikDVArlAGVSkaTVSrv 19
                ti+++A++AGVS++TV r+
  CTQ29788.1 32 TIRELAEAAGVSTTTVLRF 50
                8***************776 PP

>> RepL  Firmicute plasmid replication protein (RepL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   2.9e-06    0.0026      58      98 ..      15      53 ..       5      59 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.9e-06
        RepL 58 trlvyylidnlnsnntliatnRelaeetgislktvsetlki 98
                  + +y+i+n  ++ ++ +t Relae+ g+s+ tv +  + 
  CTQ29788.1 15 MMVYHYVIKN--RDKVMYMTIRELAEAAGVSTTTVLRFCRK 53
                4566788885..899********************876655 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.6e-06    0.0086      20      52 ..      29      61 ..      13      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.6e-06
                EEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE CS
   HTH_Crp_2 20 lpltqeelAsmlGltretvsrilseLkreglis 52
                + +t +elA+  G++  tv r  ++L+ eg+ +
  CTQ29788.1 29 MYMTIRELAEAAGVSTTTVLRFCRKLQCEGYSE 61
                789************************999877 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.8e-05     0.025       1      24 [.      30      53 ..      30      67 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.8e-05
      HTH_17  1 lltveEaAelLgvsrstvyrlirr 24
                ++t+ E+Ae  gvs +tv r++r+
  CTQ29788.1 30 YMTIRELAEAAGVSTTTVLRFCRK 53
                8*********************96 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.6e-05     0.024      18      36 ..      31      49 ..      30      55 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-05
  HTH_AsnC-type 18 isyaeLAervGlSestvlr 36
                   ++ +eLAe+ G+S++tvlr
     CTQ29788.1 31 MTIRELAEAAGVSTTTVLR 49
                   689**************99 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.1e-05     0.036      16      43 ..      31      58 ..      21      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.1e-05
      HTH_11 16 isgeeLAeeLnvSrrtvrrdIkaLeelg 43
                +++ eLAe  +vS++tv r +++L+  g
  CTQ29788.1 31 MTIRELAEAAGVSTTTVLRFCRKLQCEG 58
                799****************999998777 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1     4e-05     0.036       6      53 ..      10      61 ..       6      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4e-05
                HHHHCCCHCHHHHHHCC....CHHCHHCCCTTSSCHCHHHHHHHHHHCTSEE CS
        TrmB  6 LseyEakvYlaLlklgp....atadeiaeelgvprskvYevLrsLedkGlVe 53
                L+  E+ vY +++k+      +t++e+ae++gv+ ++v +  r+L   G+ e
  CTQ29788.1 10 LNNLEMMVYHYVIKNRDkvmyMTIRELAEAAGVSTTTVLRFCRKLQCEGYSE 61
                7889999******6654233389**********************9998866 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.6e-05     0.051      18      46 ..      31      59 ..      26      63 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.6e-05
                EEHHHHHHHHTS-HHHHHHHHHHHHHTTS CS
        MarR 18 lsvseLakklgvskstvtrvldrLekkGl 46
                +++ eLa++ gvs++tv r+ ++L ++G+
  CTQ29788.1 31 MTIRELAEAAGVSTTTVLRFCRKLQCEGY 59
                7899**********************997 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0036       3.2       7      60 ..      83     136 ..      81     156 .. 0.83
   2 ?    5.1   0.0     0.024        22     105     138 .]     158     191 ..     148     191 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0036
                 HHHHHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-B CS
       SIS_2   7 teilerivetqaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaraggl 60 
                 +ei++ +++ ++++ +++ e  +d + + ++++  G+G S ala++ a  + ++
  CTQ29788.1  83 SEIMSFFKSVNNDEFDELLEQAVDIILASERIIFVGAGTSGALAKYGARFFSNV 136
                 5778888888999999999999**********************9866665555 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.024
                 -EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2 105 DvLlviSnsGnnavvveaaeaakergmkviAlts 138
                  + +v+S sG+ + ++ +a ++    +kv  +ts
  CTQ29788.1 158 ALAIVLSVSGETEEILRFASQFSLHHCKVMSITS 191
                 5679****************************98 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       4.8   4.3e+03      36      41 ..       3       8 ..       2       9 .. 0.87
   2 ?   11.7   0.0   0.00016      0.15      23      46 ..      30      53 ..      28      56 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.8
      HTH_50 36 Shtaia 41
                Sh+a+a
  CTQ29788.1  3 SHAAVA 8 
                9***98 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00016
      HTH_50 23 YpStRklAkrLGvShtaianklrk 46
                Y  +R lA++ GvS t++++  rk
  CTQ29788.1 30 YMTIRELAEAAGVSTTTVLRFCRK 53
                8889**************996665 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00018      0.16      10      29 ..      31      50 ..      29      55 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
                HHHHHHHHHHTSSHHHHHHH CS
       HTH_3 10 lsqeeLAeklGvsrstisri 29
                ++++eLAe++Gvs +t+ r 
  CTQ29788.1 31 MTIRELAEAAGVSTTTVLRF 50
                89**************9776 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00021      0.19      24      53 ..      31      59 ..      29      65 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
                ---HHHHHHHHTS-HHHHHHHHHHHHHTTS CS
        GntR 24 LPsereLaaefgVsrttvReALrrLeaegl 53
                + + reLa++ gVs+ttv +  r+L+ eg+
  CTQ29788.1 31 M-TIRELAEAAGVSTTTVLRFCRKLQCEGY 59
                5.78**************998888888875 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00032      0.29      17      35 ..      31      49 ..      30      50 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00032
                --HHHHHHHHTSSHHHHHH CS
      TetR_N 17 ttvreIAkrAGvskgalYr 35
                +t+re+A++AGvs  ++ r
  CTQ29788.1 31 MTIRELAEAAGVSTTTVLR 49
                59***********999865 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00062      0.55      27      46 ..      29      49 ..      27      52 .. 0.87
   2 ?   -2.7   0.0       4.7   4.2e+03      36      42 ..     202     208 ..     201     208 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00062
  HTH_Tnp_ISL3 27 s.rsvkavArqlgvSwtTVwr 46
                  + +++++ A+  gvS+tTV r
    CTQ29788.1 29 MyMTIRELAEAAGVSTTTVLR 49
                  446****************65 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.7
  HTH_Tnp_ISL3  36 qlgvSwt 42 
                   ++++Sw+
    CTQ29788.1 202 DFNLSWH 208
                   799***7 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00036      0.33      17      45 ..      30      58 ..      18      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00036
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkryreeG 45
                 +++re A++ gvs  Tv r  ++ ++eG
  CTQ29788.1 30 YMTIRELAEAAGVSTTTVLRFCRKLQCEG 58
                589*****************999988888 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00035      0.32      21      42 ..      31      52 ..      29      54 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00035
      HTH_38 21 lslreIArrLgrspsTIsRElk 42
                +++re A   g+s++T+ R ++
  CTQ29788.1 31 MTIRELAEAAGVSTTTVLRFCR 52
                89*****************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2003.31
//
Query:       CTQ29789.1  [L=477]
Description: 6-phospho-beta-glucosidase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   9.4e-132  439.6   2.5   1.1e-131  439.4   2.5    1.0  1  Glyco_hydro_1  Glycosyl hydrolase family 1
     0.0034   16.9   0.1     0.0057   16.1   0.1    1.3  1  Cellulase      Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Glyco_hydro_1  Glycosyl hydrolase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.4   2.5  1.2e-135  1.1e-131       4     452 ..       5     474 ..       2     475 .. 0.90

  Alignments for each domain:
  == domain 1  score: 439.4 bits;  conditional E-value: 1.2e-135
                    GS-TT-EEEEE--HHHHH--TTSTT---BHHH...........HHHHHGGGSTTS--..-SSTT-HHHHHHHHHHHHHHTT-SEEEEE--HHHHST CS
  Glyco_hydro_1   4 tfpedFlwgaataayqiEGawnedGkgesiwD...........tftetpgkvlegsn..gdvacdsYhrykeDvallkelgvkayrfSisWpRilP 86 
                    t+p+dFlwg+a aa+q+EG+w+++Gkg+si D           +   +  +v  g+   +  a+d+Y rykeD++l++e+g+k++r Si+W+Ri+P
     CTQ29789.1   5 TLPKDFLWGGAVAAHQVEGGWDQGGKGPSICDvltggahgvprE---ITHQVEAGKYypNHEAVDFYGRYKEDIKLFAEMGFKCFRTSIAWTRIFP 97 
                    89******************************776666543322...333333333334778********************************** PP

                    TS.TT---HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH.H-GGG-SHHHHHHHHHHHHHHHHHTTT--EEEEEE-HHHHH.HHHHTSS-S CS
  Glyco_hydro_1  87 kG.egeinekGlayYerLidelleagieplvTlyHwdlPqaLqd.eGgwenrsiidafkeyaevvfkrfgdkvklwlTfnEpnvva.llgyltgef 179
                    +G e+++ne+Gl++Y+ ++dell+++iep++Tl H+++P  L + +Ggw+nr+++d f ++aevvf+r+++kvk+w+TfnE+n    +   l g  
     CTQ29789.1  98 QGdETQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQqYGGWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRnWRAPLFGYC 193
                    ****************************************99888************************************986541334444444 PP

                    TT-......S-TTTHHHHHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEEEESSSSHHHH.HHHHHHHHHHTHHHHHHHHHSS--HHHHHHHGG CS
  Glyco_hydro_1 180 aPg......kkdleaayeaaHnlllaharavklykevaqkgkigivlnlslaeplseseedk.eaaeraleflngwfldpvvkGdYpeemkellre 268
                      g       ++ e++y++ H++++a+a avk+ + ++++ ++g +l++   +p+s ++ed+  a+e ++e     f+d++++G Yp+++ +  ++
     CTQ29789.1 194 CSGvvytehDNPEETMYQVLHHQFVASALAVKAARRINPDMQVGCMLAMVALYPYSCKPEDVmFAQESMRERY--VFTDVQLRGYYPSYVLNEWER 287
                    44555555589999************************************************77777777765..9******************** PP

                    G..S----HHHHHHH.TT--SEEEEEEEEEEEEEE--...-STT---SSGGGGG-SBSS-B-SSSS-B-HHHHHHHHHHHHHTS----EEEEE--- CS
  Glyco_hydro_1 269 rgalpeiteedkell.kgkadflglnyYtsrlvknkeseeaslskteekkleeevdpslpktdigwiiepeglrkllellkkeYqklpiyiteNGl 363
                    rg    ++++d ++l +g+  +lg++yY+++ vk++      +  + +    +  +p+++ +d+gw+i+p glr+ l  l+++Yq +p++i+eNG 
     CTQ29789.1 288 RGFNIRMEDGDAQILrEGTCAYLGFSYYMTNAVKAEG----GTGDAISGFEGSVPNPHVKASDWGWQIDPVGLRYSLCELYERYQ-KPLFIVENGF 378
                    ***************8899**************9988....444444555567779999**************************.9********* PP

                    -EE-BSSS.HHH--HHHHHHHHHHHHHHHHHH.HTT--EEEEEEE-SB----GGGT.TSEE--SEEEET....TTTTEEEE-HHHHHHHHHHH-SS CS
  Glyco_hydro_1 364 gakdeiee.gkveDdkRidYlkehlnevkkai.edgvdlkgYvawsllDnfewaeg.yskrfGlvyvdr....netleRtpkkSakwykeviekng 452
                    ga d++e  g+++Dd+RidYl+ h++e+ ka+  dgvdl gY+ w+ +D ++ ++g yskr+G++yv++    + +++R +kkS+ wykevi++ng
     CTQ29789.1 379 GAYDKVEAdGSINDDYRIDYLRAHIEEMIKAVtYDGVDLLGYTPWGCIDCVSFTTGqYSKRYGFIYVNKhddgTGDMSRSRKKSFNWYKEVIASNG 474
                    *****9988***********************99**********************************998888899****************997 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   6.3e-07    0.0057      22     140 ..      70     185 ..      52     204 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 6.3e-07
                 SHHHHHHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS..TTTCSSSSTTTTHHHHHHHHHHHHHHHHHHHTT CS
   Cellulase  22 ttkalidevkdagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHse..egwltkadgnssedtaeeffkklwtqiAerykk 118
                   k+ i++++++gf+++R  ++w ++++++++++ +e+ l+ ++++ +   + ++  ++ + +   ++ l+++ g  ++ +  +ff  + + + eryk 
  CTQ29789.1  70 RYKEDIKLFAEMGFKCFRTSIAWTRIFPQGDETQPNEEGLKFYDDMFDELLKYNIEPVITLSHFemPLHLVQQYGGWTNRKVVDFFVRFAEVVFERYKH 168
                 468899*************************************************98888777546333444444556667889999999999999944 PP

                 TTTTEEEESSSS--STTCTCCT CS
   Cellulase 119 ndevvifelmNEPhgnntgaew 140
                 +  v  + ++NE + +    +w
  CTQ29789.1 169 K--VKYWMTFNEINNQR---NW 185
                 4..44455899988833...36 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3789.07
//
Query:       CTQ29790.1  [L=119]
Description: Copper-sensitivity suppressor protein A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 976.77
//
Query:       CTQ29791.1  [L=669]
Description: Suppression of copper sensitivity protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-17   61.9   0.0      1e-16   61.1   0.0    1.4  1  DsbC            Disulphide bond corrector protein DsbC
    1.1e-12   47.9   0.1    1.9e-12   47.2   0.1    1.4  1  Thioredoxin_7   Thioredoxin-like
      0.001   19.0   0.0     0.0018   18.3   0.0    1.3  1  Thioredox_DsbH  Protein of unknown function, DUF255
  ------ inclusion threshold ------
       0.03   14.3   0.1      0.054   13.5   0.1    1.3  1  Thioredoxin     Thioredoxin
      0.048   14.1   0.0      0.079   13.4   0.0    1.3  1  Thioredoxin_2   Thioredoxin-like domain
        1.4    9.0   4.1       0.61   10.1   0.8    2.1  2  IncE            Inclusion membrane protein E


Domain annotation for each model (and alignments):
>> DsbC  Disulphide bond corrector protein DsbC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   3.4e-20     1e-16      14     116 ..      43     145 ..      31     149 .. 0.87

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 3.4e-20
                 EE.EECCCEEEEEEEE-TTEEEECCCE.CE......EEESCCCC.CEEEEE---EEEECCCTEEEEEEECSEEEEEEEEECEC.SSEEEEEEEEEEEET CS
        DsbC  14 sa.agdtntlalrweiapgyylYwdkp.sg......eltlsagvalgelqlPapeekedeffglevevYegevtlplplkaaadpaelklkvtyqgCae 104
                 +  ++++++l l++ +++g+++Yw++p +g      +++ +  v    +++P+p+++++++  + +++Y+g+v +p++l+ +  p +l++ +t+ +C++
  CTQ29791.1  43 QTeSNGDTRLLLDVALEKGWKTYWRSPgEGgiapaiAWHTPLEV---SWRWPTPQRFDVAG--ISTQGYHGDVSFPMTLRGKI-PPTLSGVLTLSTCSN 135
                 33678899*******************95568888888888888...************99..99*****************9.*************** PP

                 TTEEEEEEEEEE CS
        DsbC 105 aglCyppetklv 116
                   +C+  +  ++
  CTQ29791.1 136 --VCILTDYPFS 145
                 ..***9887765 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.1   6.3e-16   1.9e-12       2      82 ..     556     641 ..     555     642 .. 0.83

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 6.3e-16
                    --SSHHHHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HH.HT-EEEEESS--S-GGG.-TT-.--...SSEEEEE- CS
  Thioredoxin_7   2 wlsdldealakaaergkpvlvffgaswcftCqalerdflsdeevkaala.ekfvllrvdvterdanilelde.qg...vPvvafld 82 
                    w+   ++a a a +++k v+++++a+wc+tC+a++ ++l +++v++al   ++v lr d+ + +a i ++ + +g   vP+  +++
     CTQ29791.1 556 WQPLSEQAIASALAEHKRVFIDVTADWCVTCKANKYNVLLRDDVQQALLaPDVVALRGDWSRPSAVISQFLTaRGsaaVPFNQIYG 641
                    777889*******************************9999999988888**********99999884443442334588766665 PP

>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     6e-07    0.0018      17      58 ..     551     592 ..     547     617 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6e-07
  Thioredox_DsbH  17 knpvdWypwgeealekakeedkpillsiGysachWChvmeke 58 
                     ++ v+W+p++e+a+++a +e k +++++   +c  C+  + +
      CTQ29791.1 551 RDRVNWQPLSEQAIASALAEHKRVFIDVTADWCVTCKANKYN 592
                     578*************************99999988876655 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.8e-05     0.054       7      35 ..     561     588 ..     555     599 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
                  HHHHHHHHTTTSSEEEEEEE-TTSHHHHC CS
  Thioredoxin   7 kenFeeevakekklvlveFyApwCghCka 35 
                  +++  +++a+ +k v+++ +A+wC  Cka
   CTQ29791.1 561 EQAIASALAE-HKRVFIDVTADWCVTCKA 588
                  5555666777.*****************6 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.6e-05     0.079       3      50 ..     569     619 ..     567     625 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.6e-05
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfp...lkpsfepka 50 
                    +++k+v++++t+++C  Ck+ k ++   ddv++ +l+ +   l+ +++  +
     CTQ29791.1 569 AEHKRVFIDVTADWCVTCKANKYNVLLRDDVQQALLAPDvvaLRGDWSRPS 619
                    689*******************9999999**99955444666666655555 PP

>> IncE  Inclusion membrane protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.5   4.4e+03      56      81 ..     261     286 ..     254     299 .. 0.69
   2 ?   10.1   0.8    0.0002      0.61      30      91 ..     313     378 ..     294     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.5
                 XXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IncE  56 aaavgvscsgfaiglgviaillgivl 81 
                 a a g ++ g+a+g  ++  l g ++
  CTQ29791.1 261 AVAAGSAAPGLALGWVLLMALAGGLI 286
                 56778888999999877655554333 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0002
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXX CS
        IncE  30 taekvqlvvsclgvvcsiiclalgiaaaavgvscsgfaiglg....viaillgivlfaisaldvle 91 
                  a + q++ s+ g+v+s ++lal ++a  +g  + g+ i +     + a+ l +vlf+ s l ++e
  CTQ29791.1 313 GAVRRQFLASVCGIVVSFLALALMMTALRLGNQALGWGIQFQnpwfIGAMALVMVLFSASLLGLFE 378
                 46677999****************************999875333256888999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 4651.65
//
Query:       CTQ29792.1  [L=203]
Description: Secreted protein, suppressor for copper-sensitivity ScsC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-20   72.7   0.0    4.4e-20   72.5   0.0    1.1  1  Thioredoxin_4  Thioredoxin
    1.8e-15   57.2   1.8    4.1e-14   52.8   1.8    2.1  1  DSBA           DSBA-like thioredoxin domain
    7.9e-12   45.6   0.2    1.6e-10   41.4   0.2    2.1  1  Thioredoxin_2  Thioredoxin-like domain
    0.00028   20.9   0.0        0.4   10.8   0.0    2.3  2  Thioredoxin_3  Thioredoxin domain
     0.0015   18.5   0.1     0.0051   16.8   0.0    1.8  2  Thioredoxin    Thioredoxin
  ------ inclusion threshold ------
       0.06   13.7   0.0       0.24   11.8   0.0    1.9  2  Thioredoxin_8  Thioredoxin-like
      0.076   13.0   0.0       0.15   12.0   0.0    1.5  1  DUF411         Protein of unknown function, DUF


Domain annotation for each model (and alignments):
>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   1.7e-23   4.4e-20       3     165 ..      40     194 ..      38     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 1.7e-23
                    SSSEEES-TT-SEEEEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEE-..---STTTHHHHHHHTT--TTHHHHHHHHH.HHHTHHHHTTS CS
  Thioredoxin_4   3 etdiviGnpdApvtvieyedlrCphCakfeeeveklleeyidtGkvkfiirdfpldkekeslkaamaarcageespeaflaika.llysqqeewae 97 
                    ++++  G+++ +  ++ ++d++Cp+C++f+  +ek++ +   + ++++i++ +p+++++ s++aa aa     ++p +f+a+++ l+ ++ ++  +
     CTQ29792.1  40 PNSPRTGAKEPKLIIVSFTDYNCPYCKQFDPLLEKIVHD---NPDIQLIVKLLPFKGQS-SVNAAKAALSTWRQQPDKFWALHQrLMAKKGYHDDA 131
                    5678899*******************************9...6***************9.**************9999999888134444444444 PP

                    -HHHHH.....HHHHHTS-------HHHHHHHHHHHHHHT--SS-EEEETTEEE-TT--HHHHHHHHT CS
  Thioredoxin_4  98 slkelaaealdkdekfeacleeekldalveaeskeakkagiestPtfiingekveepqtyeelkalid 165
                        +aa++ ++ ++ + +++++++ + ++ ++   + ++i++tP  ii++++v+++++ e+l+ l++
     CTQ29792.1 132 ---SIAAAQKKTATD-SVNIDDKTM-DSLKMNLILSQVLNIQGTPATIIGDQMVAGAIPAEDLEGLVK 194
                    ...466443333333.334555555.555555666699**************************9997 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   1.8   1.6e-17   4.1e-14       2     190 ..      54     191 ..      53     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 1.6e-17
                 EEEEEBTTBHHHHHHHHHHHHHHHHCCTEEEEEEE-SSSCHHHHCT.S.GGGSHHHHHHHHHHHHHHHHHHT....GGSSHHHHHHHHHHHHHHHHHHH CS
        DSBA   2 vdeffDvlCPyCylgkerleklaarspdvkvvlrpfelagakkasgnvgpselpeklkylledlkrlaeaegiplrfpkdklknstraarlllaagaeg 100
                 ++ f D++CPyC+++++ lek+++ +pd+++  + ++++g+                                          +s +aa+++l +++++
  CTQ29792.1  54 IVSFTDYNCPYCKQFDPLLEKIVHDNPDIQLIVKLLPFKGQ------------------------------------------SSVNAAKAALSTWRQQ 110
                 788**************************************..........................................9**************8 PP

                 GHHHHHHHHHHHHHTSSS-TSSHHHHHHHHHHTTS.HHHHHHHHTSHHHHHHHHHHHHHHHHTT-SSSSEEEETTCEEEESSSSHHHHHH CS
        DSBA 101 laekvvrelfealwsegqaitddqellevaekaGldaeeldealeseavkeavrentaaaqslgvtGvPtvvvdgkrmvfGadrldtlad 190
                 +  +++++l+++l+ ++  ++d++ ++++ +k        d +  +++  + ++ n  + q l+++G+P+++++++ mv Ga + + l+ 
  CTQ29792.1 111 P--DKFWALHQRLMAKKGYHDDAS-IAAAQKKTAT-----DSVNIDDKTMDSLKMNLILSQVLNIQGTPATIIGDQ-MVAGAIPAEDLEG 191
                 5..*******************98.8888877766.....678888999999999999******************.******9999986 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.2   6.3e-14   1.6e-10       4     108 ..      49     192 ..      47     193 .. 0.80

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 6.3e-14
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkel....ddvtvrvllfp....lkpsfepkavaiwcakekkkafkd.......................... 65 
                    + k ++v ftd +CpyCk++   l+++    +d++ +v l p     + ++ ++a + w+++       +                          
     CTQ29792.1  49 EPKLIIVSFTDYNCPYCKQFDPLLEKIvhdnPDIQLIVKLLPfkgqSSVNAAKAALSTWRQQPD-----Kfwalhqrlmakkgyhddasiaaaqkk 139
                    66889*****************999999999***********8533222333334444444444.....222246677777888888888888899 PP

  Thioredoxin_2  66 ...............ieenvelarkygvrgtPtivfldgkeivarlpGyvpaeeleal 108
                                   ++ n  l++ ++++gtP++++ d+      + G++pae+le l
     CTQ29792.1 140 tatdsvniddktmdsLKMNLILSQVLNIQGTPATIIGDQM-----VAGAIPAEDLEGL 192
                    9999999999999999999********************9.....8*******99865 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00016       0.4       8      33 ..      60      86 ..      52      90 .. 0.84
   2 !    7.8   0.0    0.0013       3.3      34      69 ..     152     188 ..     131     194 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
                   SSSTTCHHHHHHHHHHCHCC.TCECEE CS
  Thioredoxin_3  8 pgCakCpklekavkeaaaek.gikaev 33
                    +C++C++++ ++++++ ++ +i++ v
     CTQ29792.1 60 YNCPYCKQFDPLLEKIVHDNpDIQLIV 86
                   58***************9996698877 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0013
                    ECCTTHHHH..HHCT-SSSSEEECTTCEEEESS---CC CS
  Thioredoxin_3  34 ekvtdfeei..ekygVmsvPalvidgkvvvsGkvpsee 69 
                     +  +++ i  +  +++ +Pa++i ++  v+G++p e+
     CTQ29792.1 152 MDSLKMNLIlsQVLNIQGTPATIIGDQ-MVAGAIPAED 188
                    444455555556689*********665.5679777654 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     2e-06    0.0051      16      49 ..      48      81 ..      39     101 .. 0.85
   2 ?   -1.1   0.0      0.72   1.9e+03      62      78 ..     159     175 ..     131     199 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2e-06
                 TTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT CS
  Thioredoxin 16 kekklvlveFyApwCghCkalaPeleklaeelkd 49
                 ke kl++v F+   C+ Ck++ P lek+ ++  d
   CTQ29792.1 48 KEPKLIIVSFTDYNCPYCKQFDPLLEKIVHDNPD 81
                 56799***********************999886 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.72
                  HHHHHHTT-SSSSEEEE CS
  Thioredoxin  62 edlakkyevegiPtlkl 78 
                    l + ++++g P+ ++
   CTQ29792.1 159 LILSQVLNIQGTPATII 175
                  33455667777777654 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.3e-05      0.24       2      31 ..      51      80 ..      49      92 .. 0.87
   2 ?   -1.3   0.0       1.1   2.7e+03      73      88 ..     160     175 ..     129     178 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.3e-05
                   SEEEEEE--SSSHHHHHHHHHHHHHHHHHH CS
  Thioredoxin_8  2 kvvlLyfgaswcppckaftpklkelyeklk 31
                   k++++ f +++cp ck+f p l ++  +  
     CTQ29792.1 51 KLIIVSFTDYNCPYCKQFDPLLEKIVHDNP 80
                   789********************9988765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.1
                    HHTT-S--TT-SEEEE CS
  Thioredoxin_8  73 klkkkynvkaiPtlvv 88 
                     l + +n+++ P +++
     CTQ29792.1 160 ILSQVLNIQGTPATII 175
                    3477788888888776 PP

>> DUF411  Protein of unknown function, DUF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.8e-05      0.15       9      56 ..     152     202 ..     145     202 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.8e-05
      DUF411   9 laavkkklgvpe..elaSchtavvggyvieGHVPaadikrlLaekp.kaaG 56 
                 ++++k +l +++  +++    +++g++++ G +Pa+d++ l++e+  ka+G
  CTQ29792.1 152 MDSLKMNLILSQvlNIQGTPATIIGDQMVAGAIPAEDLEGLVKEQLaKARG 202
                 555555555554224567778899*******************99657776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1453.11
//
Query:       CTQ29793.1  [L=167]
Description: Thioredoxin-like protein HI_1115 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-13   49.9   0.0    3.6e-13   49.5   0.0    1.1  1  AhpC-TSA       AhpC/TSA family
    1.5e-11   44.2   0.0    1.9e-11   43.9   0.0    1.1  1  Redoxin        Redoxin
    6.4e-09   35.7   0.0    2.8e-05   24.0   0.0    2.2  2  Thioredoxin    Thioredoxin
    4.3e-07   30.2   0.0    8.9e-07   29.2   0.0    1.4  1  Thioredoxin_8  Thioredoxin-like
    7.3e-06   26.4   0.0    1.4e-05   25.5   0.0    1.4  1  Thioredoxin_2  Thioredoxin-like domain
     0.0033   17.3   0.0     0.0063   16.4   0.0    1.4  1  TraF           F plasmid transfer operon protein
  ------ inclusion threshold ------
      0.027   14.3   0.0      0.047   13.5   0.0    1.4  2  Thioredoxin_9  Thioredoxin


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   1.4e-16   3.6e-13       7     120 ..      40     144 ..      35     148 .. 0.88

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 1.4e-16
                 --EEESTTCEEEECHHH.TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHHHHTT-EETT CS
    AhpC-TSA   7 dfelknadgetvslsdy.kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkvakaygvlkee 104
                   +l++ dg+t +l+++ ++kp++l+++++ wc vC+   p+ a l+ +    +v  +++ + +  +++k+  +++l +p + D++g++a+++++    
  CTQ29793.1  40 ATSLQTLDGRTLDLHAIsQQKPLLLYVWAT-WCGVCRYTTPSVASLAADGG--NVLTVALRSGDNVTLEKWLTRKKLALPTVNDPSGQLARQWDIQ--- 132
                 578999***********777**********.**************997766..7888888888888******************************... PP

                 TTECSCEEEEE-TTSB CS
    AhpC-TSA 105 kglalratfvidkegk 120
                     +++ +vi++ g 
  CTQ29793.1 133 ---VTPTLVVISQ-GE 144
                 ...7788888874.55 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   7.4e-15   1.9e-11       9     126 ..      41     144 ..      31     154 .. 0.88

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 7.4e-15
                 -ECCEETTCEEEEEHHH.HTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHHTT-TSEEEE-TTSHHHHHTT-TTE CS
     Redoxin   9 ftlplaatdgnsvslse.fkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgkeglkfpvlsDgsaaftkalGlrle 106
                  +l++   dg +++l++  + k+++++++++ +c++C+  +p ++ la+    ++v  va+ + ++    +++++++l  p + D+s++++++++++  
  CTQ29793.1  41 TSLQT--LDGRTLDLHAiSQQKPLLLYVWAT-WCGVCRYTTPSVASLAAD--GGNVLTVALRSGDNVTLEKWLTRKKLALPTVNDPSGQLARQWDIQ-- 132
                 34655..9*********999999********.***************888..899999*************************************88.. PP

                 EE.GGGEEE-EEEEEEETTE CS
     Redoxin 107 edaseglrtpryavidedgk 126
                         tp+++vi  +g 
  CTQ29793.1 133 -------VTPTLVVIS-QGE 144
                 .......899888775.455 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.1e-08   2.8e-05      14      48 ..      56      89 ..      43     112 .. 0.83
   2 !   10.0   0.0   0.00026      0.65      59      90 ..     120     151 ..     103     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.1e-08
                 HTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCT CS
  Thioredoxin 14 vakekklvlveFyApwCghCkalaPeleklaeelk 48
                 +++ +k++l+  +A+wCg C+  +P +++la +  
   CTQ29793.1 56 ISQ-QKPLLLYVWATWCGVCRYTTPSVASLAADGG 89
                 555.9************************998766 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00026
                  TTSHHHHHHTT-SSSSEEEEEETTEEEEEEES CS
  Thioredoxin  59 denedlakkyevegiPtlklfkngkevkkyeg 90 
                  d + +la++++++  Ptl+++ +g+  + ++g
   CTQ29793.1 120 DPSGQLARQWDIQVTPTLVVISQGEVKSVTTG 151
                  556789******************97766665 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   3.5e-10   8.9e-07       2      91 ..      60     142 ..      59     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 3.5e-10
                    SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT-HHHHTT-S--TT-SEEEEE-T CS
  Thioredoxin_8   2 kvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsvpfddkkrnklkkkynvkaiPtlvvldk 91 
                    k +lLy++a+wc  c+  tp++  l  +     +v  v++ +  +    ek l+      l++p+ ++ + +l+++++++  Ptlvv+++
     CTQ29793.1  60 KPLLLYVWATWCGVCRYTTPSVASLAADGG---NVLTVALRSGDN-VTLEKWLTRK---KLALPTVNDPSGQLARQWDIQVTPTLVVISQ 142
                    789**********************99997...777888877764.7777777777...89***************************85 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   5.3e-09   1.4e-05       2      99 ..      56     152 ..      55     159 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 5.3e-09
  Thioredoxin_2   2 kgngkpvlvvftdpdCpyCkklkkelkel..ddvtvrvllfp......lkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldg 89 
                     +++kp+l+++++++C+ C+     + +l  d+ +v +++        l++    k  a+ + +         + + +lar+++++ tPt+v++ +
     CTQ29793.1  56 ISQQKPLLLYVWATWCGVCRYTTPSVASLaaDGGNVLTVALRsgdnvtLEKWLTRKKLALPTVN---------DPSGQLARQWDIQVTPTLVVISQ 142
                    5789********************9999999777777666664444444444444444444444.........45699************887776 PP

  Thioredoxin_2  90 keivarlpGy 99 
                     e+  + +G 
     CTQ29793.1 143 GEVKSVTTGW 152
                    6566677765 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.5e-06    0.0063     126     215 ..      55     154 ..      32     161 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.5e-06
        TraF 126 klake.ygLlfFyrgkcpyceaqapilqafadkyg..levraVsvdgrplpe........lpnarvdkgqaa.rlgvkrtPalvlvdpksqkvvpvaaG 212
                 +++++   Ll++ +  c++c+   p++ ++a + g  l+v   s d+  l++        lp   + +gq+a ++ ++ tP+lv++++   +v+ v+ G
  CTQ29793.1  55 AISQQkPLLLYVWATWCGVCRYTTPSVASLAADGGnvLTVALRSGDNVTLEKwltrkklaLPTVNDPSGQLArQWDIQVTPTLVVISQG--EVKSVTTG 151
                 5555524567777788**************9997633555555556666666666666666778888999998*************998..99999999 PP

        TraF 213 lls 215
                 ++s
  CTQ29793.1 152 WTS 154
                 988 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.8e-05     0.047      45     101 ..      63     118 ..      42     130 .. 0.85
   2 ?   -3.7   0.0       3.7   9.6e+03      98     109 ..     134     146 ..     132     150 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
                    EEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEE CS
  Thioredoxin_9  45 ilvltedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqyltngaraiPtl 101
                    +l + + wCg ++ + P +a +a    +  +++ lr  ++ ++++ lt ++ a Pt+
     CTQ29793.1  63 LLYVWATWCGVCRYTTPSVASLAADG-GNVLTVALRSGDNVTLEKWLTRKKLALPTV 118
                    4555678******************9.55699***********************96 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.7
                    SSEEEEE-TT.-- CS
  Thioredoxin_9  98 iPtliildee.ge 109
                    +Ptl+++ ++ ++
     CTQ29793.1 134 TPTLVVISQGeVK 146
                    6999999877554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1272.18
//
Query:       CTQ29794.1  [L=247]
Description: putative NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-55  186.2   3.8    7.6e-55  186.0   3.8    1.0  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    2.1e-46  157.9   3.2    2.6e-46  157.5   3.2    1.1  1  adh_short      short chain dehydrogenase
    3.7e-14   53.0   2.7    5.4e-14   52.5   2.7    1.2  1  KR             KR domain
     0.0026   17.1   0.3      0.018   14.4   0.2    2.2  3  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
     0.0065   16.0   0.4      0.013   15.0   0.4    1.8  1  Epimerase      NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.085   12.2   0.0       0.13   11.7   0.0    1.2  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.0   3.8   2.5e-58   7.6e-55       1     232 [.       8     246 ..       8     247 .] 0.94

  Alignments for each domain:
  == domain 1  score: 186.0 bits;  conditional E-value: 2.5e-58
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsree 94 
                   Ga +gIGra+A +la+eG++v++ + ++ +   + v+++++++g++ +l++D++de+qv a++e++ +  + l  lvnnagi  + +  ++++s e 
    CTQ29794.1   8 GASRGIGRATALLLAQEGYTVAVNYHHNINaaTEVVNTIVASGGKAtALRADISDEAQVMAMFEAIDRMGEPLTALVNNAGILFT-QCTVESLSAER 103
                   999**********************988776679999****9997757************************************9.999999***** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSC.....CEEEEEEEGGGTSBSTTTT.HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTH CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeg.....gsivnlssvgaervvpnyn.aygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgf 185
                   ++r+l++n++++fl++++a++ m ++     g+ivn+ss +++ + p+    y+a+K+a+  lt  lA e++++g RvN v pg+i T++ ++  g+
    CTQ29794.1 104 INRVLATNVTGYFLCCREAVKRMSHRhggkgGAIVNVSSAASRLGAPGEYvDYAASKGAVDTLTTGLALEVAAQGSRVNGVRPGLIYTEMHASG-GE 199
                   *********************7776556788**************9987779**************************************7665.47 PP

                   HHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTT CS
  adh_short_C2 186 delleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgG 232
                   +   ++++ + p++r g+peeva+a+++L+sd+asy+tG+ l   gG
    CTQ29794.1 200 PGRVDRVKGSLPMQRGGQPEEVAQAIAWLLSDKASYVTGSFLELAGG 246
                   88999***********************************9988887 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.5   3.2   8.8e-50   2.6e-46       2     189 ..       3     196 ..       2     200 .. 0.95

  Alignments for each domain:
  == domain 1  score: 157.5 bits;  conditional E-value: 8.8e-50
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGGCSH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfselse 98 
                 ++l+ Gas+GIGra+a  la+eG++v+v +  + +++ ev++ + + g ka+a+++D++d+++v a++e++    ++l +LvnNAGi   ++++++ls+
  CTQ29794.1   3 IALISGASRGIGRATALLLAQEGYTVAVnYHHNINAATEVVNTIVASGGKATALRADISDEAQVMAMFEAIDRMGEPLTALVNNAGIlFTQCTVESLSA 101
                 69*********************************************************************9999************877889999*** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHH...HCTTEEEEEEEEGGGTSB-TT.BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHH CS
   adh_short  99 eewervievNltgvflltravlpaml...kqssGrIvnvsSvagkvpvag.vaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmake 189
                 e+++rv+++N+tg+fl++r++++ m     +++G+IvnvsS a++ + +g ++ Y+AsK+av+ lt  la e+a +g rvn+v PGl+ T+m ++
  CTQ29794.1 102 ERINRVLATNVTGYFLCCREAVKRMShrhGGKGGAIVNVSSAASRLGAPGeYVDYAASKGAVDTLTTGLALEVAAQGSRVNGVRPGLIYTEMHAS 196
                 **************************88889999**********9999872677**************************************875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   2.7   1.8e-17   5.4e-14       1     161 [.       2     168 ..       2     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 1.8e-17
                 SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------.---TT CS
          KR   1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr.dklle 98 
                 g+ li G+  g+G+++a  la++g +  v    +    +++++ ++++ a+g + ++++aD+sd+++v a++e+i++ ++p++  ++ Ag+l  + ++e
  CTQ29794.1   2 GIALISGASRGIGRATALLLAQEGYTVAVNYHHN---INAATEVVNTIVASGGKATALRADISDEAQVMAMFEAIDRMGEPLTALVNNAGILFtQCTVE 97 
                 6789********************8866666555...4566779**********************************************98626689* PP

                 T--HHHHHHHHTTTTHHHHH.HHHHTTT......S--SEEEEEEEHHHHH--TT-.HHHHHHHHHHHHHHH CS
          KR  99 emtaedleqvlapKvkGawn.Lhelled......esldffvlfSSiagllgsagq.anYaaaNaflDalae 161
                 +++ae++++vla  v+G      e++++       +   +v +SS+a+ lg++g+ ++Yaa    +D+l +
  CTQ29794.1  98 SLSAERINRVLATNVTGYFLcCREAVKRmshrhgGKGGAIVNVSSAASRLGAPGEyVDYAASKGAVDTLTT 168
                 *****************8541345555444457788899**************98469***9999999875 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   5.9e-06     0.018      40     101 ..       5      63 ..       3      71 .. 0.83
   2 ?   -0.8   0.0      0.28   8.3e+02      47      70 ..      75      98 ..      66     107 .. 0.75
   3 ?   -2.7   0.0       1.1   3.3e+03      44      64 ..     217     237 ..     216     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.9e-06
                    EEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-B-GGGS-TT CS
  THF_DHG_CYH_C  40 vvvGrsnivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpelikaemvkeg 101
                    ++ G+s+ +g++ allL++++ tV v  ++  ++++ t+  + +v++ Gk+  ++a+   ++
     CTQ29794.1   5 LISGASRGIGRATALLLAQEGYTVAVNYHH--NINAATEVVNTIVASGGKATALRADIS-DE 63 
                    6789********************997655..68888888899********99999854.33 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.28
                   TTHHHHHHHHHCTT-EEEEE-TTS CS
  THF_DHG_CYH_C 47 ivgkplallLleknatVtvchskt 70
                    +g+pl++l+++++   t c  ++
     CTQ29794.1 75 RMGEPLTALVNNAGILFTQCTVES 98
                   579999999999977777776655 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.1
                    --TTTHHHHHHHHHCTT-EEE CS
  THF_DHG_CYH_C  44 rsnivgkplallLleknatVt 64 
                    + + v +++a+lL+ k + Vt
     CTQ29794.1 217 QPEEVAQAIAWLLSDKASYVT 237
                    556789999999999988876 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.4   4.3e-06     0.013       1      62 [.       4      72 ..       4     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.3e-06
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfke 62
                +l+ Ga+  iG+a++  l+++gy+v +  + + + +t+  +++       +  ++d+ d++++ ++f+ 
  CTQ29794.1  4 ALISGASRGIGRATALLLAQEGYTVAVNYHHNINAATEVVNTIvasggkaTALRADISDEAQVMAMFEA 72
                5899********************99999998888877777779*****************99888873 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.2e-05      0.13       1      74 [.       5      73 ..       5      76 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev 74
                   Li G +  iG  +a lL ++gy+v +  +++ + +t+ ++++         ++ +  ++D++D++++  +++ +
     CTQ29794.1  5 LISGASRGIGRATALLLAQEGYTVAVNYHHNINAATEVVNTIVA-----SGGKATALRADISDEAQVMAMFEAI 73
                   778888889***************99888888888888888864.....3568999************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2093.64
//
Query:       CTQ29795.1  [L=957]
Description: glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.2e-202  671.7   3.9   2.3e-190  633.0   0.9    3.0  2  GDC-P            Glycine cleavage system P-protein
    1.6e-07   30.9   0.1    4.1e-07   29.6   0.1    1.6  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00014   20.9   1.1     0.0034   16.4   0.0    2.2  2  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.021   13.5   0.0        4.5    5.9   0.0    2.4  2  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
      0.066   12.4   0.0       0.25   10.4   0.0    1.9  2  Aminotran_1_2    Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> GDC-P  Glycine cleavage system P-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  633.0   0.9  6.4e-194  2.3e-190       1     428 [.      16     438 ..      16     440 .. 0.99
   2 !   35.1   0.1   1.9e-12   6.8e-09      29     289 ..     461     739 ..     447     807 .. 0.85

  Alignments for each domain:
  == domain 1  score: 633.0 bits;  conditional E-value: 6.4e-194
                 HHH-SS-HHHHHHHHHHHT-SSHHHHHHHHS-GGGB--S---------HHHHHHHHHHHHTTB---EE--BTTB------HHHHHHTTT-HHHHS--S- CS
       GDC-P   1 erhigpsekdqkemLetlGlkslddliekavPkeiklkkelkleapksEeellaelekiasknkvvksfiGaGyydtilPaviqrnilenpewytaYtP 99 
                 erhigp++++q+emL+t+G++sl++li++ vP++i+l+++ ++ ++++E ++lael++ias+nk +ks+iG+Gy++++lP+viqrn+lenp+wytaYtP
  CTQ29795.1  16 ERHIGPDAQQQQEMLKTVGADSLNALIGQIVPQDIQLATPPQVGDATTEFAALAELKAIASRNKRFKSYIGMGYTAVQLPPVIQRNMLENPGWYTAYTP 114
                 69************************************************************************************************* PP

                 SSGGG-HHHHHHHHHHHHHHHHHHT-SEE-S-BS-HHHHHHHHHHHHHHH-SSS.--EEEEETTS-HHHHHHHHHHHGGGT-EEEEE-GGG--S-...S CS
       GDC-P 100 YqaEisqGrLeallnfqtlvadltGldianasllDegtAaaEAvllaaraskkk.akkvvvdkkvhpqtlevlktrakglgieivevdlteekvtdkek 197
                 Yq+E+sqGrLe+llnfq++++dltGldia+asllDe+tAaaEA+++a+r+sk k a++++v+++vhpqtl+v++tra+++g++++++d  ++kv d ++
  CTQ29795.1 115 YQPEVSQGRLESLLNFQQVTLDLTGLDIASASLLDEATAAAEAMAMAKRVSKLKsANRFFVAADVHPQTLDVVRTRAETFGFDVIVDD--ADKVLD-HQ 210
                 ****************************************************99789*******************************..778887.9* PP

                 -EEEEEEEES-TTSB----HHHHHHHHHTT-EEEEEE-TTGGGTB--HHHHT-SEEEEE-TTTT---GGG----EEEEE-GGGGGG--S-EEEEEEBTT CS
       GDC-P 198 evagvlvqypnteGriedlkelvekakkkkslvvvaadllaLtllkpPgelgaDivvGsaqrfGvPlgyGGPhagffAvkeklkRkiPGRlvGvskDae 296
                 +v+gvl+q+++t+G+i+d+++l++++k +k++v+vaad +aL+ll++Pg++gaDiv+GsaqrfGvP+gyGGPha+ffA+k+++kR++PGR++GvskDa+
  CTQ29795.1 211 DVFGVLLQQVGTTGEIHDYSKLIAELKARKVIVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVPMGYGGPHAAFFAAKDEFKRSMPGRIIGVSKDAA 309
                 *************************************************************************************************** PP

                 S-EEEEEE-CCGSHHCCHHHCS-S--S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T-EE--SSBSSEEEEE--TTTHHHHHHHH CS
       GDC-P 297 gkralrlalqtREqHirRdkAtsniCtaqaLlAnlaalyavyhGkeglkeiarrihkkteilakelkkkleeelkkkkffdtllieveekaaekvlkka 395
                 g++alr+a+qtREqHirR+kA+sniCt+q+LlAn+a+lyav+hG+ glk+ia rih+ t+ila +l+kk + +l+++++fdtl++ev++kaa  vl++a
  CTQ29795.1 310 GNTALRMAMQTREQHIRREKANSNICTSQVLLANIASLYAVFHGPAGLKRIAGRIHRLTDILADGLQKK-GLKLRHAHYFDTLCVEVADKAA--VLARA 405
                 ******************************************************************997.9*****************9999..***** PP

                 HHTTEE-EEESTTEEEEE--TT--HHHHHHHHH CS
       GDC-P 396 ekeglnlrkvelktvgialdEtvtkedieallk 428
                 e+ ++nlr+  +++vgi+ldE++t+ed+ +l++
  CTQ29795.1 406 EALQINLRSDIHGAVGITLDEATTREDVLNLFR 438
                 ******************************997 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 1.9e-12
                 HHS-GGGB--S-------.....--HHHHHHHHHHHHTTB--.-EE--BTTB------HHHHHHTTT-HHHHS--S-SSG.GG-HHHHHHHHHHHHHHH CS
       GDC-P  29 kavPkeiklkkelkleap.....ksEeellaelekiasknkv.vksfiGaGyydtilPaviqrnilenpewytaYtPYqa.EisqGrLeallnfqtlva 120
                 +++P+++ l+ +  l++p     +sE+e+++ ++++  k+    + +i  G   ++l a+ +   +  pe+     P+ + E + G  + + +    ++
  CTQ29795.1 461 RSIPAAM-LRDDAILTHPvfnryHSETEMMRYMHALERKDLAlNQAMIPLGSCTMKLNAAAEMIPITWPEFAE-LHPFCPvEQAEGYQQMIAQLSDWLV 557
                 5566666.4444445555566669****************997899*************99998899999964.556655489999999999999**** PP

                 HHHT-SEE-S-BS-HHHHHHH.HHHHHHHH-SSS--EEEEETTS-HHHHHHHH.HHHGGGT-EEEEE-GGG--S-.............S-EEEEEEEES CS
       GDC-P 121 dltGldianasllDegtAaaE.Avllaaraskkkakkvvvdkkvhpqtlevlk.trakglgieivevdlteekvtd..........kekevagvlvqyp 207
                  ltG d     +  ++ A +E A lla r+ ++ +++   d  + p +++  +   a+  g+++v+v + +++  d             +++ ++v yp
  CTQ29795.1 558 KLTGYDA--VCMQPNSGAQGEyAGLLAIRHYHESRNEGHRDICLIPSSAHGTNpASAQMAGMQVVVVACDKNGNIDladlrekaeqAGANLSCIMVTYP 654
                 ****996..57999999999966788999999999999999988888877554267889999999999999988888999998877778999******* PP

                 -TTSB---.-HHHHHHHHHTT-EEEE.EE-TTGGGTB--HHHHT-SEE.EEE-TTTT---GGG----EEEEE-GGGGGG--S-EE CS
       GDC-P 208 nteGried.lkelvekakkkkslvvv.aadllaLtllkpPgelgaDiv.vGsaqrfGvPlgyGGPhagffAvkeklkRkiPGRlv 289
                 +t+G  e+ ++e+ e +++    v +  a++ a + +++Pg +gaD+  +   + f +P g GGP  g + vk++l+  +PG  v
  CTQ29795.1 655 STHGVYEEtIREVCEIVHQFGGQVYLdGANMNAQVGITSPGFIGADVShLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSV 739
                 ****9987689*********9988873577778888***********84677889***************************865 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.1   1.1e-10   4.1e-07      29     170 ..     544     684 ..     540     717 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.1e-10
                      T--HHHHHHHHHHHHHTT-SEEEE....ES-HHHHHHHHHHHH-...-TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHH CS
  Beta_elim_lyase  29 gedktvnrLedavaelfgkeaalf....vpqGtaAnsillkill...qrgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekle 115
                      g  + + +L d + +l+g++a+       +qG  A  ++++      + g+  i+ +p+  h  ++ a a++ag++++ +  +++G++dl++l+
       CTQ29795.1 544 GYQQMIAQLSDWLVKLTGYDAVCMqpnsGAQGEYAGLLAIRHYHesrNEGHRDICLIPSSAHG-TNPASAQMAGMQVVVVACDKNGNIDLADLR 636
                      556777889999999*****9998444445777777888844442224466789999998885.667888************************ PP

                      HHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETT CS
  Beta_elim_lyase 116 aaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgAR 170
                      ++ ++ ga   + ++i++t          v  e +rev +i+++ g ++ lDgA 
       CTQ29795.1 637 EKAEQAGA---NLSCIMVTYPSTH----GVYEETIREVCEIVHQFGGQVYLDGAN 684
                      ****9777...9999999987664....47899********************94 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2     0.012        45     129     209 ..     200     280 ..     170     287 .. 0.81
   2 !   16.4   0.0   9.4e-07    0.0034     109     207 ..     612     715 ..     577     733 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.012
                  GGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTTTTSSTT-E CS
  Aminotran_5 129 ldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghKllgPtGiG 209
                  +d+++k l+++     + +   +tG i++  ++++ +k+++++v v a  +++       k+g+D+++ s++ +  P G G
   CTQ29795.1 200 VDDADKVLDHQDVFGVLLQQVGTTGEIHDYSKLIAELKARKVIVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVPMGYG 280
                  566667776555554555555679*******************99988888888888999************999998866 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 9.4e-07
                  HHHHTEEEEEEEBETTSCBEGGGHHHH--.TTEEEEEEESB.ETTTTE.B--HHHHHHHHHHTT-EEEEE-TTTTTTS---HH.HHTESEEEEETTT. CS
  Aminotran_5 109 akrtgakvkvipldeegeldldeleklln.ektklvaithv.snvtGt.iqpveeigklakkkgalvlvDaaqavghipidvk.klgvDflafsghK. 201
                  a+  g++v+v+  d++g++dl +l+++ +   ++l +i+ +  +++G+  + + e+++++++ g  v +D+a +  +  i     +g+D+  +  hK 
   CTQ29795.1 612 AQMAGMQVVVVACDKNGNIDLADLREKAEqAGANLSCIMVTyPSTHGVyEETIREVCEIVHQFGGQVYLDGANMNAQVGITSPgFIGADVSHLNLHKt 709
                  45569*******************8888623444444433214679*98899********************988877776551579**********9 PP

                  TTSSTT CS
  Aminotran_5 202 llgPtG 207
                  ++ P G
   CTQ29795.1 710 FCIPHG 715
                  999998 PP

>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0025       8.8     154     236 ..     604     683 ..     547     695 .. 0.84
   2 ?    5.9   0.0    0.0013       4.5     324     355 ..     767     798 ..     754     803 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0025
                    S-HHHHHHHHHHT-EEEEE--BTTTBB-HHHHHHHHHHHHCTT.EEEEEEEEBS-TTT-BB--HHHHHHHHHHCT-EEEEE-T CS
  Pyridoxal_deC 154 ahssvekaalvlgvklrvipldengklrgaalekaieedkekGlipffvvatlGttvlgaFddlkelgdicekydlwlHvDAA 236
                    ah      a+++g+++ v+ +d+ng++  a+l+++ e++ ++     ++++t  +t     ++++e+ +i+++ + ++  D A
     CTQ29795.1 604 AHGTNPASAQMAGMQVVVVACDKNGNIDLADLREKAEQAGAN--LS-CIMVTYPSTHGVYEETIREVCEIVHQFGGQVYLDGA 683
                    66666678999***********************99999999..44.889999998766667899999999998888877766 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0013
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
  Pyridoxal_deC 324 wfvlralGveglqnqirksvelakyleklirk 355
                    w+ +r++G egl++  ++ + +a+y++ ++++
     CTQ29795.1 767 WMYIRMMGAEGLKQASQNAILNANYIATRLKD 798
                    9************************9998875 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.34   1.2e+03     260     299 ..     343     382 ..     321     415 .. 0.72
   2 ?   10.4   0.0   7.1e-05      0.25      94     158 ..     596     655 ..     556     683 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.34
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEE CS
  Aminotran_1_2 260 vaaalsdallkqseleemrqrlqkrrkelrdeLaelglkv 299
                      a+l ++      l+  + r++++++ l d+L+++glk 
     CTQ29795.1 343 NIASLYAVFHGPAGLKRIAGRIHRLTDILADGLQKKGLKL 382
                    4444444444444678888899999999999999998875 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 7.1e-05
                    -EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS- CS
  Aminotran_1_2  94 deilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesph 158
                    d  l+p+  ++     ++++g++vv ++++  ++ ++dl +l e+ ++a   n    +i v+ p+
     CTQ29795.1 596 DICLIPSSAHGTNPASAQMAGMQVVVVACD--KNGNIDLADLREKAEQAG-ANL--SCIMVTYPS 655
                    667999999999******************..************988854.444..477776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 6748.51
//
Query:       CTQ29796.1  [L=129]
Description: glycine cleavage complex lipoylprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.8e-50  167.7   0.2    9.7e-50  167.5   0.2    1.0  1  GCV_H          Glycine cleavage H-protein
     0.0024   17.8   0.0     0.0032   17.4   0.0    1.3  1  RnfC_N         RnfC Barrel sandwich hybrid domain
  ------ inclusion threshold ------
       0.02   14.7   0.2      0.051   13.4   0.2    1.7  2  Biotin_lipoyl  Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.5   0.2   1.6e-53   9.7e-50       1     121 [.       8     128 ..       8     129 .] 0.99

  Alignments for each domain:
  == domain 1  score: 167.5 bits;  conditional E-value: 1.6e-53
                 -EE-TTSEEEEEETT.EEEEEE-HHHHHHH-SEEEEE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE-GGGTT-TTHHHH-TTTTT--EEEE CS
       GCV_H   1 lyytkehewvkveedgvatvGitdfaqeelgdvvfvelpevgtkvkkgeslaavEsvKaasevyapvsGevvevNekleeepeliNkdpyeegWliklk 99 
                 l+y+kehew+++e dg++tvGit++aqe lgd+vfv+lpevg++v++g ++a+ EsvKaas++yap+sGe+v vNe+l+++pel+N+dpy +gW++k+k
  CTQ29796.1   8 LKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELNDSPELVNSDPYTDGWIFKIK 106
                 79************************************************************************************************* PP

                 ES-GGGGGGSEEHHHHHHHHHH CS
       GCV_H 100 lsnleeleeLlsaeeyekllke 121
                 +s++ ++  Ll+a +ye+ll++
  CTQ29796.1 107 ASDEAQVAALLDAAAYEALLED 128
                 ******************9987 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   5.4e-07    0.0032      47      89 ..      47      90 ..       4      94 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.4e-07
      RnfC_N 47 kvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrlvahgs 89
                +vg +V+ G   a ae+   ++ ++a++sG+++a+++ l+ +++
  CTQ29796.1 47 EVGATVEAGADCAVAESvKAASDIYAPISGEIVAVNEELNDSPE 90
                78999****99999888445789*************99887766 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   8.5e-06     0.051      22      61 ..      47      86 ..      41      96 .. 0.91
   2 ?   -1.9   0.0      0.51     3e+03      50      64 ..      99     113 ..      90     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.5e-06
                   STTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTT CS
  Biotin_lipoyl 22 kvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeG 61
                   +vG +V+ag   a+ e+ K+  +i ap +G ++ +  + +
     CTQ29796.1 47 EVGATVEAGADCAVAESVKAASDIYAPISGEIVAVNEELN 86
                   79******************************99987765 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.51
                    SEEEEEESSTTTEEE CS
  Biotin_lipoyl  50 aGvvkeilvkeGdtv 64 
                    +G + +i++++ ++v
     CTQ29796.1  99 DGWIFKIKASDEAQV 113
                    788888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1051.38
//
Query:       CTQ29797.1  [L=364]
Description: aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-79  267.3   0.2    1.5e-79  267.0   0.2    1.1  1  GCV_T     Aminomethyltransferase folate-binding domain
    4.8e-14   52.0   0.1      1e-13   51.0   0.1    1.5  1  GCV_T_C   Glycine cleavage T-protein C-terminal barrel domain
  ------ inclusion threshold ------
      0.041   14.2   0.0      0.077   13.4   0.0    1.4  1  POPLD     POPLD (NUC188) domain


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.0   0.2   2.5e-83   1.5e-79       1     257 []       7     254 ..       7     254 .. 0.94

  Alignments for each domain:
  == domain 1  score: 267.0 bits;  conditional E-value: 2.5e-83
       GCV_T   1 lydrhkalgakfvefagwemPvqYasesikaehlavreaaglfDvShmgkievsGpdaaalLqrlltndisklkp.gkatytlllnedGgvidDlivar 98 
                 ly++h   ga++v+f+gw mP++Y  +s ++eh+avr +ag+fDvShm+ +++ G    ++L +ll+nd++kl + gka yt +l+ ++gvidDliv+ 
  CTQ29797.1   7 LYEQHTLCGARMVDFHGWMMPLHY--GSQIDEHHAVRGDAGMFDVSHMTIVDFHGSRIREFLRYLLANDVAKLTTpGKALYTGMLTASAGVIDDLIVYF 103
                 7999********************..*********************************************99877*********************** PP

       GCV_T  99 ldedefllvvnaankekdlawlekaaekkdldvevedvteelallalqGPkarevlskll.gadlselkffsfaevelaggkkvlvsRtgytGedGfei 196
                 l+ed f+lvvn+a++ekdlaw++++ae+ +l+++v+d   +l+l+a+qGP+a+  ++ l+ +a+ + ++ ++ +   ++ + ++++++tgytGe G+ei
  CTQ29797.1 104 LSEDYFRLVVNSATREKDLAWISEQAEPYGLEITVRD---DLSLIAVQGPQAKAKAATLFtDAQRQAVEGMKPFF-GVQ-AGDLFIATTGYTGEAGYEI 197
                 ************************9997788888877...9*******************777777777777663.333.579**************** PP

       GCV_T 197 yipaeeaeelweaLleagkeegvkpaGlgArdtlRlEaglrlyghdldeettPleaglgwa 257
                  +p+e+a+++w+ Ll    ++gvkp+GlgArdtlRlEag++lyg+++de ++Pl a++gw+
  CTQ29797.1 198 AMPNEQAADFWRGLL----DAGVKPCGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWT 254
                 **************7....5568************************************95 PP

>> GCV_T_C  Glycine cleavage T-protein C-terminal barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.1   1.7e-17     1e-13       2      78 ..     280     356 ..     279     357 .. 0.85

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 1.7e-17
     GCV_T_C   2 rlvgleld.dgapllrggepil.r...dgevvGhvTSgaysptlgksialAyvkaelaklgtevevevrgkrvpaevvkkpf 78 
                 +lvgl++  +   +lrgg p+      ++++ G +TSg++sptlg sialA v+a+    g++  v++r++++p++v+k+ f
  CTQ29797.1 280 QLVGLVMTeK--GVLRGGLPVRfTdsdGNQKEGIITSGTFSPTLGYSIALARVPAGI---GDTAVVQIRNREMPVKVTKPGF 356
                 79*****634..589******64245344788**********************876...66999**************988 PP

>> POPLD  POPLD (NUC188) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.3e-05     0.077       1      43 [.     194     236 ..     194     242 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
       POPLD   1 gwdlilPwgwglpfwlsLvrvgvrvgGlrerrqlalesgkpyf 43 
                 g+ + +P + ++ fw+ L   gv++ Gl  r +l le+g+  +
  CTQ29797.1 194 GYEIAMPNEQAADFWRGLLDAGVKPCGLGARDTLRLEAGMNLY 236
                 578899********************************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       290  (0.0161749); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2648.51
//
Query:       CTQ29798.1  [L=400]
Description: putative oxidoreductase with FAD/NAD(P)-binding domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-30  104.9   0.1    6.8e-30  104.5   0.1    1.2  1  FAD_binding_3   FAD binding domain
    1.7e-05   24.1   5.7      0.058   12.4   4.7    3.1  2  Lycopene_cycl   Lycopene cyclase protein
     0.0001   22.0   3.8    0.00015   21.5   2.8    1.7  1  DAO             FAD dependent oxidoreductase
    0.00012   22.3   0.7    0.00031   20.9   0.7    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    0.00012   21.3   1.3    0.00012   21.3   1.3    1.9  2  FAD_binding_2   FAD binding domain
    0.00018   20.5   3.8      0.003   16.5   0.2    2.2  2  Trp_halogenase  Tryptophan halogenase
    0.00018   20.7   0.0    0.00033   19.8   0.0    1.4  1  SE              Squalene epoxidase
     0.0019   17.5   0.4      0.066   12.5   0.4    2.2  2  Thi4            Thi4 family
     0.0025   18.3   0.1     0.0051   17.4   0.1    1.5  1  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0064   15.8   0.1      0.013   14.8   0.1    1.4  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.025   13.9   1.0      0.042   13.1   1.0    1.3  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
      0.076   11.7   2.2       0.32    9.6   1.5    1.9  2  HI0933_like     HI0933-like protein
       0.13   11.8   0.0        0.4   10.2   0.0    1.8  2  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
       0.15   12.6   0.1        3.4    8.2   0.1    2.3  1  NAD_binding_7   Putative NAD(P)-binding
       0.31   10.9   1.6       0.87    9.4   1.6    1.9  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.1   5.7e-33   6.8e-30       2     344 ..       4     345 ..       3     349 .. 0.76

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 5.7e-33
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS......S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCCCEEEEEHH CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp......radglnqrtmellrqlGledrilaegapnelmgealynelsdtpkaradle 91 
                    +dV+IVG+G +Gl  a  L+  G rv ++ek + +          r + +n  +  ll +l ++++i a+ a+     e++ ++    +  ++  +
     CTQ29798.1   4 VDVAIVGGGMVGLAVACGLQGSGLRVAVLEKAEPRPLAAdappalRVSAINAASEKLLTKLDVWREIVAQRASCYHGMEVWDKD----SFGHISFD 95 
                    79*****************************87643222223677**********************98875544444555555....45666666 PP

                    CHHCS..T-C.EE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEEE CS
  FAD_binding_3  92 lessp..erv.tvypqteleriLvehaeerg.lqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetvy 183
                     ++s+  ++  +++    +  +L ++a++++ +++   +e++   q   g++  +++ ++g    ++a+ ++GaDG++S+ r++++i+++  +   
     CTQ29798.1  96 -DQSMgfSHLgYIIENAVVHHALWQKAQRCAdVTLLAPAELQ---QVAWGENEAFLSLQDGSM--LTARLVIGADGANSWLRNKADIPLTFWDYHH 185
                    .33330023213455566899*********999999999999...445555556666667776..***********************88877554 PP

                    EEEEEEEEEEC-SCCCTTCCEEEEECCTTEE.EEEECCE.TEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEEEE.EEEEEEEEEEE CS
  FAD_binding_3 184 eagvldvlfdadlsdiveplvlilsaesrgv.mviPlen.tlerfyvqvearaekeersekfteeevkarlreivgektldvei.eevsawtvaqr 276
                    +a v+ +  +++ +      v+ ++ + +g+ +++Pl++ +l    +++++++ +++r ++ +e+   ++l+ +++      ++ +e +++++  r
     CTQ29798.1 186 HALVATIRTAEPHQ-----AVARQAFHGDGIlAFLPLSDpHLC--SIVWSLSPGEAQRMQQADETTFNQALNIAFDNRLGLCQLaSEREVFPLTGR 274
                    44444444444444.....4555565555555*******5555..566666666689999999999999999999999999865268999****** PP

                    EESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHH...HHHTTSS-GGGGHHHHHHHHHHHHH CS
  FAD_binding_3 277 vaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLa...avlkGeAkeelLdtYeeerravaqa 344
                    +a+++   r+ l+GDAaH+  P +GqG+N++ +Da +L   L    a  k  ++   L  Ye+ r+  a+ 
     CTQ29798.1 275 YARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIDELKrlhAQGKDIGQHLYLRRYERSRKHSAAL 345
                    **************************************988761003334446667788999998887765 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   4.7   4.9e-05     0.058       1     143 [.       5     168 ..       5     211 .. 0.66
   2 ?    4.8   0.0      0.01        12     238     323 ..     264     349 ..     245     362 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.9e-05
  Lycopene_cycl   1 DvvviGaGpAglslAarl...................teakpglkvvlieaspsllfpnnyvWsdefedlgaleecvehsWsgt...ivylddgkk 74 
                    Dv+++G+G  gl++A  l                   ++a p+l+v  i+a+ + l +   vW    ++  +  +    +W +     + +dd++ 
     CTQ29798.1   5 DVAIVGGGMVGLAVACGLqgsglrvavlekaeprplaADAPPALRVSAINAASEKLLTKLDVWREIVAQRASCYHG-MEVWDKDsfgHISFDDQSM 99 
                    9**************9995555555555555555555555555666666555555555555665544444432222.2467654222577888888 PP

  Lycopene_cycl  75 illgraYgrvsskrlkeel...lerlvengvklleakvesveeeeageslvvleggrkirarlvvdarglas 143
                      + + Y  ++ +  ++ l   ++r++ +   l  a  ++v+  e+ e    l++g  + arlv+ a g+ s
     CTQ29798.1 100 GFSHLGYI-IENAVVHHALwqkAQRCA-DVTLLAPAELQQVAWGEN-EAFLSLQDGSMLTARLVIGADGANS 168
                    88888884.555666665522245666.555566789999999888.9999999999999999999999655 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.01
  Lycopene_cycl 238 eEqgviPvtlggslprleqk.vlaiGaaaglvhPaTGYsvarslaeapllasaiaaalres.slsarawatlwprerkrqreffrllg 323
                     E+ v P+  g+ +++++++  + +G aa  +hP  G  v      a  l + + ++ ++  ++ ++   + + r+rk  +++  l g
     CTQ29798.1 264 SEREVFPL-TGRYARQFAAHrLALVGDAAHTIHPLAGQGVNLGFMDAAELIDELKRLHAQGkDIGQHLYLRRYERSRKHSAALM-LAG 349
                    68899***.89999**999945569************99988877777566666555443245666666666667777666666.555 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   2.8   1.2e-07   0.00015       1      31 [.       5      36 ..       5      44 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.2e-07
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdi 31
                dv+i+GGG++Gl++A  L+  g  V++lek+ +
  CTQ29798.1  5 DVAIVGGGMVGLAVACGLQGSGlrVAVLEKA-E 36
                8*****************8888********9.4 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.7   2.6e-07   0.00031       1      28 [.       8      35 ..       8      38 .. 0.96

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.6e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   IvG+G+ Gl+ A+ L+  g++v +lek+
     CTQ29798.1  8 IVGGGMVGLAVACGLQGSGLRVAVLEKA 35
                   9*************************97 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   1.3     1e-07   0.00012       1      35 [.       5      39 ..       5      61 .. 0.93
   2 ?   -0.6   0.1      0.46   5.6e+02      84     149 ..     304     368 ..     282     377 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1e-07
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefg 35
                   Dv ++G+G+ GLa A  ++  Gl+vav+ek++++ 
     CTQ29798.1  5 DVAIVGGGMVGLAVACGLQGSGLRVAVLEKAEPRP 39
                   9******************************9865 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.46
                    HHHHTHHHHHHHHHHTT----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHH CS
  FAD_binding_2  84 afveaapeavdeLeelgvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlve 149
                    ++   a+e +deL++l+++ +   ++++++r+    ++++  l+ a+ + ++++++g + ++ +++
     CTQ29798.1 304 LGFMDAAELIDELKRLHAQGKD-IGQHLYLRRYERSRKHSAALMLAGMQGFREMFSGSHPAKKFLR 368
                    5566789999999999999988.7779999998888777555555555556888888877777666 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.5    0.0062       7.4       1      35 [.       5      36 ..       5      42 .. 0.89
   2 !   16.5   0.2   2.5e-06     0.003     146     350 ..     103     316 ..      54     345 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0062
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SS CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlvesee 35
                    ++ ivGGG  G  +A+ l+  +   l+v ++e++e
      CTQ29798.1  5 DVAIVGGGMVGLAVACGLQGSG---LRVAVLEKAE 36
                    699**********999998888...9999999876 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.5e-06
                     --EEEE-HHHHHHHHHHHHHHC.T-EEEE.--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG-IIIIIIT---EEE-TTT----EEEEEE CS
  Trp_halogenase 146 syAyhldaalyakfLrrvaear.Gvtrve.gkvvevqldedgrveslrledgreveadlfiDcsGfrgllieqaLktgfedwsdvLltdrAlavq 238
                     + +y +++a + + L + a++   vt +  ++ ++v     ++ + l l+dg  + a+l+i + G ++ l ++a + + + w  +     Al++ 
      CTQ29798.1 103 HLGYIIENAVVHHALWQKAQRCaDVTLLApAELQQVAW--GENEAFLSLQDGSMLTARLVIGADGANSWLRNKA-DIPLTFWDYHH---HALVAT 191
                     45788888888899988888875565543144444444..44556788999**********************9.88888777766...9***** PP

                     EE--H---SSEEEEE-SSEEEEEEEETTEEEEEEEE-TTTS...........-HHHHHH.HHHHHCT--TTTS-EEEE---EE.ES-SEETTEEE CS
  Trp_halogenase 239 veseelvepytrataekaGWtWkiPLqhrlgnGyvyssaha...........dddeAla.ellaeldgkleaeprkirfttGr.rkqawvknvva 320
                     +++ e+ ++++r   +  G     PL++     +v+s +             + ++Al+ ++ ++l++ + a +r++   tGr  +q+  + + +
      CTQ29798.1 192 IRTAEPHQAVARQAFHGDGILAFLPLSDPHLCSIVWSLSPGeaqrmqqadetTFNQALNiAFDNRLGLCQLASEREVFPLTGRyARQFAAHRLAL 286
                     ****************************9999999986655455666654443345554356677888888888777777777355666667778 PP

                     -CCCTEE--CCCS-HHHHHHHHHHHHHHT- CS
  Trp_halogenase 321 lGlasgfvePlestsihliqaalrrLlall 350
                     +G+a+  + Pl ++++ l   ++ +L+  l
      CTQ29798.1 287 VGDAAHTIHPLAGQGVNLGFMDAAELIDEL 316
                     9*****************999777776554 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.7e-07   0.00033     126     217 ..     278     369 ..     268     398 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.7e-07
          SE 126 knekkGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvleelksfyvkRkeldavvnvLsialyslfaadsdelkalrk 217
                 +   + l l+GDa    HPl g G+  +++D++ l++ lk l+    +     +l+ + ++Rk+++a +    + + ++f+ ++ + k lr 
  CTQ29798.1 278 QFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIDELKRLHAQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFREMFSGSHPAKKFLRD 369
                 55667789****************************999999444433334456789********999988889999999988887777776 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.4   5.5e-05     0.066      18      49 ..       4      34 ..       1      37 [. 0.93
   2 ?    2.6   0.0     0.058        69      60      87 ..     349     377 ..     338     384 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.5e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailer 49
                 Dv+ivG+G  GL+ a  l  + +l+va+le+
  CTQ29798.1  4 VDVAIVGGGMVGLAVACGLQGS-GLRVAVLEK 34
                7******************999.*******97 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.058
                 TSTTBSEEEE.ETTTHHHHHHTT---EEE CS
        Thi4  60 GGqlfsaivv.rkpakelLdelgikyede 87 
                 G q f ++    +pak++L+++g+k+ d+
  CTQ29798.1 349 GMQGFREMFSgSHPAKKFLRDVGLKLADT 377
                 6677888876368************9886 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   4.2e-06    0.0051       2      31 ..       6      35 ..       5      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.2e-06
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                v++vGgG +gl +A+ l+  g +V v+e +
  CTQ29798.1  6 VAIVGGGMVGLAVACGLQGSGLRVAVLEKA 35
                89************************9976 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1     1e-05     0.013     144     179 ..       5      42 ..       2      75 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1e-05
                  EEEEES-SHHHHHHHHHHHHHT-E.EEEEESSSSSS.T CS
                  xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.x RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgke.vtlveardrll.r 179
                  ++++vGgG++G+ +A+ l   g + ++l +a +r+l  
   CTQ29798.1   5 DVAIVGGGMVGLAVACGLQGSGLRvAVLEKAEPRPLaA 42 
                  46777777777777777777777733344455566543 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.0   3.5e-05     0.042       2      31 ..       8      36 ..       7      40 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.5e-05
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylilEkgn 31
                 I+G+G  Gla+a+ l+ +gl ++ +lEk++
   CTQ29798.1  8 IVGGGMVGLAVACGLQGSGL-RVAVLEKAE 36
                 9*******************.8******75 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.5   0.00027      0.32       2      33 ..       5      36 ..       4      38 .. 0.95
   2 ?    0.1   0.0      0.21   2.5e+02     114     167 ..     117     169 ..     110     179 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00027
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 dv+++GgG  Gl  A  ++  g rV++leka+
   CTQ29798.1  5 DVAIVGGGMVGLAVACGLQGSGLRVAVLEKAE 36
                 89***************************985 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.21
                  HHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS- CS
  HI0933_like 114 allkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSi 167
                  +++k+ + a+v+l    e+++v+  e++   +++++++ l+a+ ++ A G +S+
   CTQ29798.1 117 LWQKAQRCADVTLLAPAELQQVAWGENE-AFLSLQDGSMLTARLVIGADGANSW 169
                  455666668999999*******888887.6677878899999999999999998 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00033       0.4       3      42 ..       2      41 ..       1      63 [. 0.77
   2 ?   -2.4   0.0       2.6   3.1e+03      56      77 ..     120     140 ..      96     156 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00033
                HTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHH CS
        IlvN  3 kgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvk 42
                ++  +a++G G  G a a  l+ sgl v+v  +++ + ++
  CTQ29798.1  2 QSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEKAEPRPLA 41
                6778************************997776665444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.6
                 HHHHT-SEEEE-S-HHHHHHHH CS
        IlvN  56 eavkkadvvmiliPDelqkevy 77 
                 +a + ad v++l+P elq+  +
  CTQ29798.1 120 KAQRCAD-VTLLAPAELQQVAW 140
                 4445555.45677777776555 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0028       3.4       9      46 ..       5      51 ..       1     228 [. 0.73

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0028
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapevkeele............e 46
                    v +vGgG v++  +  l  +g +v v+ ++                  +
     CTQ29798.1  5 DVAIVGGGMVGLAVACGLQGSGLRVAVLEKAE--P-RplaadappalrvS 51
                   6899*******999999999999999998884..1.11334444444442 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.6   0.00073      0.87       2      34 ..       6      38 ..       5     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00073
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseea 34
                va++G G++G  +a  +  +gl+V +++ +e +
  CTQ29798.1  6 VAIVGGGMVGLAVACGLQGSGLRVAVLEKAEPR 38
                9**************************996643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2812.50
//
Query:       CTQ29799.1  [L=392]
Description: 2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-26   92.3   0.2    4.3e-26   92.0   0.2    1.1  1  FAD_binding_3    FAD binding domain
    8.8e-06   25.0   0.1       0.42    9.6   0.0    3.0  3  Lycopene_cycl    Lycopene cyclase protein
    1.6e-05   24.3   0.0      0.056   12.7   0.0    2.1  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      8e-05   21.7   0.7      0.096   11.5   0.2    2.3  2  Trp_halogenase   Tryptophan halogenase
    9.2e-05   22.2   2.2    0.00027   20.6   0.9    2.0  2  DAO              FAD dependent oxidoreductase
     0.0003   21.3   0.0      0.086   13.4   0.0    2.4  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
     0.0018   17.3   0.0     0.0026   16.9   0.0    1.2  1  SE               Squalene epoxidase
      0.008   16.2   0.2        0.3   11.1   0.1    2.5  2  NAD_binding_9    FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.012   15.8   0.6      0.041   14.1   0.1    2.2  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
        0.1   12.5   0.1        8.4    6.4   0.1    2.6  2  Erythro-docking  Erythronolide synthase, docking


Domain annotation for each model (and alignments):
>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.2   2.4e-29   4.3e-26       3     338 ..       2     336 ..       1     344 [. 0.78

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 2.4e-29
                    EEEEE--SHHHHHHHHHHHHTTHH....EEEEESSSSSC.CSS....S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC.CEEEE CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvr....vvlvekrsttv.vlp....radglnqrtmellrqlGledrilaegapnelmgealynelsdt.pkara 88 
                    +VlIVG+G +G++lal  s+        v+l+e ++  + ++p    ra  l   t + l  +G+++r++++++p + ++   ++  +   + a a
     CTQ29799.1   2 SVLIVGGGMTGATLALAISRL-TGgalpVHLIEAQDPHSsRHPgfddRAIALAAGTCQQLARIGIWQRLAERATPIQRVHVSDRGHAG-FvNLAAA 95 
                    7****************9997.223568*****98765514558899**************************999987766666633.2577777 PP

                    EHH..CHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE--GTT-HHHHHHTGGEEEEEEE CS
  FAD_binding_3  89 dle..lesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvGaDGgrStvrktlgiefegeetv 182
                    d+   ++ +  + ++++q     +L+e+    g++++  ++ve++ + +e+v+ ++ +    ++  ++ k lv+aDG rS+  ++ gi+ + +   
     CTQ29799.1  96 DYGlsALGQVVELHDVGQRL-FGLLREA---PGVTLHCPAKVEAVSRSQESVSLTLEGG---KI--INGKLLVAADGSRSALGARCGISWQQQP-- 180
                    77733555555666666643.3455544...67******************98777655...45..*********************9965555.. PP

                    EEEEEEEEEEEC-SCCCTTCCEEEEECCTTEEEEEECCETEEEEEEEEECCE-GGGSCCCHHHHHHHHHHHHHHTTSSCEE.EEEEEEEEEEEEEE CS
  FAD_binding_3 183 yeagvldvlfdadlsdiveplvlilsaesrgvmviPlentlerfyvqvearaekeersekfteeevkarlreivgektldv.eieevsawtvaqrv 277
                       + + +++++ ++ + e+  + + +e + ++++P+++++   ++     ++++++ +  ++e+  ++l++++g+   +     + s++++a  +
     CTQ29799.1 181 --YEQIAIIANVSTALPHEGRAFERFTEHGPLAMLPMSQGRCSLVW--CHPQSRRDEVQSWSDERFCQELQQAFGWRLGRItHAGKRSVYPLALTT 272
                    ..445555555555555777888889999999*******5444444..344446777889999*****************967778899******* PP

                    ESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHHH.HTTS..S-GGGGHHHHHHH CS
  FAD_binding_3 278 aekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaav.lkGe..AkeelLdtYeeer 338
                    a++  + r+ l+G Aa +  P +GqG N++++D++ La  La + l+Ge  +   lL  Y+++r
     CTQ29799.1 273 ASRAVSHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAELLADAyLSGEdvGHYPLLCRYQARR 336
                    ******************************************6615565223445666666666 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.1    0.0069        12       2      34 ..       3      36 ..       2      86 .. 0.85
   2 !    7.4   0.0    0.0011         2     105     148 ..     129     170 ..      97     183 .. 0.84
   3 !    9.6   0.0   0.00024      0.42     222     293 ..     243     316 ..     213     344 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0069
  Lycopene_cycl  2 vvviGaGpAglslAarlte.akpglkvvlieasp 34
                   v+++G+G  g  lA  + +    +l v liea +
     CTQ29799.1  3 VLIVGGGMTGATLALAISRlTGGALPVHLIEAQD 36
                   89******99999988744255679999999865 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0011
  Lycopene_cycl 105 leakvesveeeeageslvvleggrkirarlvvdarglaslkkar 148
                      akve+v  +++  ++ +legg+ i+++l v a g  ++  + 
     CTQ29799.1 129 CPAKVEAVSRSQE-SVSLTLEGGKIINGKLLVAADG-SRSALGA 170
                    469********99.9*********************.4444344 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00024
  Lycopene_cycl 222 aaylra.lglkvkevvee.EqgviPvtlggslprleqkvlaiGaaaglvhPaTGYsvarslaeapllasaiaaa 293
                     + l++  g++  ++ ++  ++v P++l    +++  + + +G aa   hP  G  +   l+    la+ +a+a
     CTQ29799.1 243 CQELQQaFGWRLGRITHAgKRSVYPLALTTASRAVSHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAELLADA 316
                    555555589999999887357*******************************9988776666666666666554 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.1e-05     0.056     144     188 ..       2      52 ..       1      83 [. 0.74
   2 !    9.6   0.0   0.00027      0.48     193     239 ..     119     166 ..      99     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.1e-05
                  EEEEES-SHHHHHHHHHHHHH..T-E.EEEEESSSSSS...TTS-HHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx..xxx.xxxxxxxxxxx...xxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalakl..gke.vtlveardrll...raldkelsaa 188
                  ++++vGgG++G  lA a+++l  g+  v+l+ea d      +++d+++ a 
   CTQ29799.1   2 SVLIVGGGMTGATLALAISRLtgGALpVHLIEAQDPHSsrhPGFDDRAIAL 52 
                  578999999999999999999754446999999886665566666666555 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00027
                  HHHT.TEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEE CS
                  xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 193 leke.GvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrp 239
                  l++  Gv++++ ++v+++ + +e+++++le g+ i+ +l+v a G r 
   CTQ29799.1 119 LREApGVTLHCPAKVEAVSRSQESVSLTLEGGKIINGKLLVAADGSRS 166
                  66666*****************9999*****************99885 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.2   5.3e-05     0.096       2      34 ..       3      35 ..       2      39 .. 0.93
   2 !    8.2   0.0   0.00053      0.95     168     363 ..     124     326 ..     114     339 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.3e-05
                    EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase  2 ivivGGGtaGwlaAaalakalkgklevtlvese 34
                    ++ivGGG  G + A a+++ + g l v l+e++
      CTQ29799.1  3 VLIVGGGMTGATLALAISRLTGGALPVHLIEAQ 35
                    89*******************888*******87 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00053
                     T-EEEE--EEEEEE-TTS-EEEEEETTS-EEE-SEEEE-SGGG-IIIIIIT---EEE-TTT----EEEEEEEE--H---SSEEEEE-SSEEEEEE CS
  Trp_halogenase 168 GvtrvegkvvevqldedgrveslrledgreveadlfiDcsGfrgllieqaLktgfedwsdvLltdrAlavqveseelvepytrataekaGWtWki 262
                     Gvt      ve++ + +++v sl+le g+ +++ l + + G r+ l ++       +w+++     A++++v +  + e ++     ++G     
      CTQ29799.1 124 GVTLHCPAKVEAVSRSQESV-SLTLEGGKIINGKLLVAADGSRSALGARC----GISWQQQPYEQIAIIANVSTALPHEGRAFERFTEHGPLAML 213
                     55544444445555556666.69999999999999999999999999987....67888888889999999999988888888888899999999 PP

                     EETTEEEEEEEE-TTTS-HHHHHHHHHHHCT--TTTS-EEEE---EE................ES-SEETTEEE-CCCTEE--CCCS-HHHHHHH CS
  Trp_halogenase 263 PLqhrlgnGyvyssahadddeAlaellaeldgkleaeprkirfttGr................rkqawvknvvalGlasgfvePlestsihliqa 341
                     P+++   + +v++  +  +de      +++ ++l++   +   + Gr                 ++a ++ + ++G+a+  + P+ +++  l  +
      CTQ29799.1 214 PMSQGRCS-LVWCHPQSRRDEVQSWSDERFCQELQQ---AFGWRLGRithagkrsvyplalttASRAVSHRLALVGNAAQTLHPIAGQGFNLGLR 304
                     99999888.899988886655555444444433222...233333333333346666677766999999999*********************** PP

                     HHHHHHHT--BTT--HHHHHHH CS
  Trp_halogenase 342 alrrLlallpdksdepaaiaef 363
                     ++++L++ll+d   +  ++ ++
      CTQ29799.1 305 DVMSLAELLADAYLSGEDVGHY 326
                     **********988776666555 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.9   1.5e-07   0.00027       2      36 ..       3      39 ..       2      75 .. 0.86
   2 ?    0.6   0.1      0.18   3.3e+02     149     294 ..     112     248 ..      50     303 .. 0.59

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.5e-07
                EEEECTSHHHHHHHHHHHHT.T....EEEEESSSSTTSSG CS
         DAO  2 vviiGGGiiGlstAyeLarr.g....Vtllekgdiagsga 36
                v+i+GGG++G++ A++ +r  g    V l+e++ +++  +
  CTQ29799.1  3 VLIVGGGMTGATLALAISRLtGgalpVHLIEAQ-DPH--S 39
                99***************9877569*********.665..3 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.18
                 HHHHHHHH.HHTT-EEEESECEEEEEEEETCEEEEE.EECT.EEEEEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEE CS
         DAO 149 taalaraa.ealGveilegtevtgleeedgkvwgve.rttp.gendaadavVnaaGawsdllgllkeldlpispvrgqvlvlkplseklvspaailpvp 244
                  + l   + ea Gv+++  ++v+++++ +     v  +  + g +   + +V a G  s l +++++   + +p     +   ++s +   p+ + +  
  CTQ29799.1 112 GQRLFGLLrEAPGVTLHCPAKVEAVSRSQ---ESVSlTL-EgGKIINGKLLVAADGSRSALGARCGIS-WQQQPYEQIAIIA-NVSTA--LPHEGRAFE 202
                 55555554234488888888888887753...3332212.2244333344777777665444333222.2324433333333.43332..233333333 PP

                 EEEETTTTEEEEEETTSE..EEEEESSEEETTCSSTSCSHHHHHHHHHHHHH CS
         DAO 245 etdddgrgvyvtprkdgr..vlvGgtadeesgdddpevdeedidellealrk 294
                  + ++++ + ++p+ +gr  ++ +     +s+ d  ev++   ++++++l++
  CTQ29799.1 203 -RFTEHGPLAMLPMSQGRcsLVWCHP---QSRRD--EVQSWSDERFCQELQQ 248
                 .6666777777777777633223332...22222..3333333344444444 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.8e-05     0.086       1      40 [.       2      47 ..       2      74 .. 0.83
   2 ?    5.4   0.0     0.015        27      41      78 ..     110     147 ..     101     153 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.8e-05
                EEEEECSSHHHHHHHHHHHHTT...SEEEEEESSSSSS...TTSSH CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg...kkVtvversdkll...rllDe 40
                +v++vGgG +g  lA a+++l      V+++e++d      +++D+
  CTQ29799.1  2 SVLIVGGGMTGATLALAISRLTggaLPVHLIEAQDPHSsrhPGFDD 47
                699***************998767789*****99865444555555 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHT.TEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  41 easkilqeklekn.gievllntkveeiegsedgvesvkl 78 
                 +++++l   l++  g++++  +kve++  s++ v s++l
  CTQ29799.1 110 DVGQRLFGLLREApGVTLHCPAKVEAVSRSQESV-SLTL 147
                 77888888999999**************999864.3555 PP

>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.5e-06    0.0026      79     171 ..     228     319 ..     210     361 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.5e-06
          SE  79 siangelkeylkeevaPqlPkelrksfkkaleegklrsmpnkflpasknekkGlillGDalnmRHPltggGmtvalnDivllskllkpledls 171
                 +   +e++++  e+   +l +     + + ++ gk  + p     as+  ++ l l+G+a    HP+ g G   +l+D++ l++ll +   ls
  CTQ29799.1 228 QSRRDEVQSWSDERFCQELQQAFGWRLGRITHAGKRSVYPLALTTASRAVSHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAELLADA-YLS 319
                 55556666666666666666666666666666667677777778889999999*********************************998.333 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00017       0.3       2      37 ..       5      38 ..       4      52 .. 0.87
   2 ?    2.6   0.0     0.069   1.2e+02     109     154 ..     120     163 ..     108     165 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsepg 37
                   ivG+G++G++++ ++ +    +  l ++l++ + p 
     CTQ29799.1  5 IVGGGMTGATLALAISRLT--GGALPVHLIEAQDPH 38
                   9*****************6..**********97664 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.069
  NAD_binding_9 109 arlpegvtvevh.raevvdleeradgqavlladgaslaadaVvLAlG 154
                    +++p    v++h  a+v++++++++++ ++l++g+ +  + +v A G
     CTQ29799.1 120 REAP---GVTLHcPAKVEAVSRSQESVSLTLEGGKIINGKLLVAADG 163
                    4443...34444389********************999999998876 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.3e-05     0.041       1      29 [.       5      36 ..       5      44 .. 0.88
   2 ?   -1.9   0.0       2.2     4e+03       5      34 ..      88     118 ..      87     136 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.3e-05
                   EE--SHHHHHHHHHHHCC..TE.EEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gf.dvlllekrd 29
                   IvG+G++G+++A ++++   g+  v+l+e++d
     CTQ29799.1  5 IVGGGMTGATLALAISRLtgGAlPVHLIEAQD 36
                   9****************777554899999986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.2
                    SHHHHHHH.HHHHCCTEEEEEE-SSSSSSGG CS
  NAD_binding_8   5 GlsGlvaA.ylLakagfdvlllekrdrlGGr 34 
                    G+  l+aA y L+  g  v+l + ++rl G 
     CTQ29799.1  88 GFVNLAAAdYGLSALGQVVELHDVGQRLFGL 118
                    6666666634477777777777777777664 PP

>> Erythro-docking  Erythronolide synthase, docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1    0.0047       8.4      19      40 ..      99     120 ..      92     123 .. 0.83
   2 ?    3.2   0.0     0.046        82      30      50 ..     322     340 ..     311     348 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0047
                      HHHHTTSS-THHHHHHHHHHHH CS
  Erythro-docking  19 LeaLsdedGhdDvGaRLeaLLR 40 
                      L aL +     DvG+RL  LLR
       CTQ29799.1  99 LSALGQVVELHDVGQRLFGLLR 120
                      66777776778**********9 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.046
                      HHHHHHHHHHHHHHHHHH-S- CS
  Erythro-docking  30 DvGaRLeaLLRRWnsRRadet 50 
                      DvG     LL R+++RRa + 
       CTQ29799.1 322 DVGH--YPLLCRYQARRAGDK 340
                      5555..369********9653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2771.13
//
Query:       CTQ29800.1  [L=438]
Description: proline aminopeptidase P II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-65  220.6   0.1    2.3e-65  220.2   0.1    1.2  1  Peptidase_M24  Metallopeptidase family M24
    3.4e-35  120.5   0.0    7.2e-35  119.4   0.0    1.6  1  AMP_N          Aminopeptidase P, N-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.2   0.1   2.6e-69   2.3e-65       2     209 .]     181     411 ..     180     411 .. 0.93

  Alignments for each domain:
  == domain 1  score: 220.2 bits;  conditional E-value: 2.6e-69
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEETTEEEEEEEEE. CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhgarglafppivasgenaavlhytpndrvlkegdlvlidagaeydgyasDitrTv. 96 
                     +r+a++i++ a+++++e+++pg+ e++l+ ei ++ + rhgar +++++iv+ gen+++lhyt n+ +l++gdlvlidag+ey+gya+DitrT+ 
     CTQ29800.1 181 VMRRAGEITALAHTRAMEKCRPGMFEYQLEGEILHE-FNRHGARFPSYNTIVGGGENGCILHYTENESELRDGDLVLIDAGCEYRGYAGDITRTFp 275
                    59********************************88.9*********************************************************9 PP

                    ECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTB...................CCGBSSCSEEEESSSSSEEEEEESSSTT CS
  Peptidase_M24  97 lvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesagl...................akffphglGHgvGlevhdegpsvsresn 173
                    ++Gkft+ qre+y++vle +e+a+k+ +pG+++ ++++ + +++ ++ l                   + +f hgl H++Gl+vhd+  ++   ++
     CTQ29800.1 276 VNGKFTQPQREIYDIVLESLETALKLYRPGTSICQVNQEVVRIMITG-LvrlgilkgeideliannahRPYFMHGLSHWLGLDVHDV-GNYD--TD 367
                    999******************************************95.44555589999999************************9.7777..57 PP

                    CSSB--TTBEEEEEEEEEEETTT.......E.EEEEBEEEEEES CS
  Peptidase_M24 174 dgrkleeGmvftiEpgiyfapge.......g.gvriedtvlvte 209
                    ++r+le+Gmv+t+Epg+y a++        g g+ried++++te
     CTQ29800.1 368 RSRVLEPGMVLTVEPGLYIATDAdvpaqyrGiGIRIEDDIVITE 411
                    89****************65533455666677***********7 PP

>> AMP_N  Aminopeptidase P, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.0   8.1e-39   7.2e-35       3     123 .]       8     126 ..       6     126 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 8.1e-39
                 HHHHHHHHHS-SSEEEEEE-----EEETTEE------HHHHHHH----SS-EEEEEESSEEEE...EEEE----HHHHHHH----HHHHHHHHHT-SEE CS
       AMP_N   3 erRkrllealpensvvilaagkekyrsgdveypFrqnsdFlYltGfnepdavlvlekeedkkehkstLfvprkdpekelWdGarlgleeakelfgvdea 101
                 +rR+ ll++++ +s+++++a++e++rs+d eyp+rqnsdF+Y+tGfnep+a lvl k +d+ +++s+Lf + +d  +e+W G+rlg e+a +++gvd+a
  CTQ29800.1   8 SRRQTLLAQMQAGSAALIFAAPEAVRSADSEYPYRQNSDFWYFTGFNEPEALLVLIK-SDETHNHSVLFNRVRDLTAEIWFGRRLGQEAAPAKLGVDRA 105
                 8******************************************************75.3335559********************************** PP

                 EEGGGHHHHHHHHHTT-SE.EE CS
       AMP_N 102 epidelesalakllkgsdktvy 123
                    +e++++l +ll+g d  +y
  CTQ29800.1 106 LAFSEINQQLYQLLNGLDA-IY 126
                 **************99886.66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3275.79
//
Query:       CTQ29801.1  [L=194]
Description: hypothetical protein CH1034_290034 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-39  135.7   1.1    2.1e-39  135.6   1.1    1.0  1  UPF0149   Uncharacterised protein family (UPF0149)


Domain annotation for each model (and alignments):
>> UPF0149  Uncharacterised protein family (UPF0149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   1.1   1.2e-43   2.1e-39       3     173 ..      15     179 ..      13     180 .. 0.94

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 1.2e-43
                 HHHHHHHCT-SS-H...HHHHHHHHHHHHCT.HHHCCCHHHHCCCC.......STCHHH....HHHHHHHHHHHHHHHCTTTTS------.....S-HH CS
     UPF0149   3 LdelLasaelpesaldlaelhGfltgllcgpellppeeWlpallgeapafsdeeegeal....lallkrlyneiaaqLadedefefelll.....edla 92 
                 +d+lL ++++  ++   ae+hG++ gllcg+    +++W+p++++ +      +eg a+    +++l++++ +i ++L+d d f f+l+l      +++
  CTQ29801.1  15 VDQLLNQQGVGLTP---AEMHGLISGLLCGG--NTDSSWQPLVHDLT------NEGLAFghelAQALRNMHSAISDSLDD-DGFLFQLYLpegdaVSVF 101
                 79************...**************..67***********8......7776666666*****************.9***************** PP

                 HHHHHHHHHHHHHHHHHHHCTTT.GGG-SSHHHHHHHHHHHHHCT---TTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHH- CS
     UPF0149  93 draeplaeWceGFlqGlglagddWlkdasseelaelLedlaalarleiaeeeeedeedeealeelieavpvavlllyeela 173
                 dra++la W+++Fl Glg+++++ l++++ +e++e+++dl ++a+l++ +e+e++ee e +lee+ie+v+va+ll+++ +a
  CTQ29801.1 102 DRADALAGWVNHFLLGLGVSQPK-LDKVK-DETGEAIDDLRNIAQLGY-DEDEDQEELEMSLEEIIEYVRVAALLCHDTFA 179
                 ***********************.77778.9****************7.****************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1506.81
//
Query:       CTQ29802.1  [L=109]
Description: protein that localizes to the cytokinetic ring [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-20   71.1   1.6    9.7e-20   70.8   1.6    1.1  1  ZapA             Cell division protein ZapA
    0.00078   18.9   3.8    0.00098   18.6   3.8    1.0  1  DUF3482          Domain of unknown function (DUF3482)
  ------ inclusion threshold ------
      0.012   15.5   4.5      0.016   15.2   4.5    1.1  1  PriC             Primosomal replication protein priC
       0.03   14.5   2.8      0.048   13.8   2.8    1.3  1  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
      0.037   14.3   0.3      0.066   13.5   0.1    1.5  1  Flu_NS2          Influenza non-structural protein (NS2)
      0.077   13.2   1.8       0.11   12.7   1.8    1.2  1  Fib_alpha        Fibrinogen alpha/beta chain family
      0.093   13.3   0.3       0.14   12.7   0.3    1.3  1  YtxH             YtxH-like protein
       0.21   11.6   4.3       0.88    9.6   0.3    2.1  2  DUF2205          Short coiled-coil protein
       0.24   11.7   5.0        5.9    7.2   0.8    2.1  2  WXG100           Proteins of 100 residues with WXG
        1.2   10.3   5.3         10    7.3   0.6    2.1  2  DUF5320          Family of unknown function (DUF5320)


Domain annotation for each model (and alignments):
>> ZapA  Cell division protein ZapA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   1.6   5.4e-23   9.7e-20       1      88 []       6      90 ..       6      90 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 5.4e-23
        ZapA  1 vtvtIlgreytlaceegeeeylreaaklvdekikeireaggnlseerllvmaaLnladellklkkraeeleaeleelaerleelaerl 88
                v+++I gr+ +++c+++++++l +aa+ +++++++++e++++ ++e+l  +aaLn+++el+++k++ ++  + +e   +r++ l++ +
  CTQ29802.1  6 VDLQIFGRSLRVNCPPEQRDALNQAAEDLNQRLQDLKERTRVTNTEQLVFIAALNISYELTQEKAKTRDYASSME---QRIRMLQQTI 90
                899********************************************************************9888...******9976 PP

>> DUF3482  Domain of unknown function (DUF3482)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   3.8   5.5e-07   0.00098      38     112 ..      22      96 ..      18     104 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.5e-07
     DUF3482  38 ekreaLqrliealeeqrqarreeaaeliaelLidvaayreeadeeaeeaakekllerlqekvRqrEqkcveaLlk 112
                 e+r+aL+++ e+l+++ q+++e++    +e+L+ +aa+  + +  +e+a++++ ++++++ +R   q++ +aLl+
  CTQ29802.1  22 EQRDALNQAAEDLNQRLQDLKERTRVTNTEQLVFIAALNISYELTQEKAKTRDYASSMEQRIRMLQQTIEQALLE 96 
                 789**************************************999999**************************96 PP

>> PriC  Primosomal replication protein priC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   4.5   8.7e-06     0.016      77     138 ..      23      95 ..      17     103 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.7e-06
                 HHHHHHHHHHHHTTTSSSSST................TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT... CS
        PriC  77 qieAlqrelattelrkkeakqkkksr...........kkshqlyqelakhqeyerrLeemiaereqqlekaqs 138
                 q  Al+++ +  + r ++ k+++              + s +l qe ak ++y++ +e++i+  +q++e+a  
  CTQ29802.1  23 QRDALNQAAEDLNQRLQDLKERTRVTnteqlvfiaalNISYELTQEKAKTRDYASSMEQRIRMLQQTIEQALL 95 
                 55566666666666666655554433566666666669******************************99866 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.8   2.7e-05     0.048      28      96 ..      19      96 ..       6     100 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
                     GHHHHHHHHHHHHHHHHHHHHHHHHHH..T-HHH....HH...HHHHHHHHHT-HHHHHHHHHHHHHHT--HHHHHHH CS
  PEP-utilisers_N 28 dveaelerleeAlekvreelealaeka..lgeee....aa...ifeahlmlleDpelleeveerIregglnaeaAvee 96
                      + ++++ l++A e + ++l++l+e++   + e+    aa     e +++ ++ +++++++e+rIr  + + e+A+ e
       CTQ29802.1 19 CPPEQRDALNQAAEDLNQRLQDLKERTrvTNTEQlvfiAAlniSYELTQEKAKTRDYASSMEQRIRMLQQTIEQALLE 96
                     4778999********************9643444666644454678899999999************999****9876 PP

>> Flu_NS2  Influenza non-structural protein (NS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   3.7e-05     0.066      37      85 ..      22      68 ..      13      76 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.7e-05
                CHHHHHHHHHHHHHHHHHHHHHC----TTSHHHHHHHHHHHHHHHHHHH CS
     Flu_NS2 37 kwreqlgqkreeirllieelrhklkiaessieqivslsllelllevkdv 85
                + r+ l q  e++   +++l+ +++++++  eq+v++ +l++ +e+ ++
  CTQ29802.1 22 EQRDALNQAAEDLNQRLQDLKERTRVTNT--EQLVFIAALNISYELTQE 68
                56999**********************96..9*************9987 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.8     6e-05      0.11      30     100 ..      24      93 ..      16     100 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6e-05
                 CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC CS
   Fib_alpha  30 ekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaq 100
                 +  +++  e+l+++l++++++t+ +++        l+   + ++ ++  ++++++++e++i  l++ti + 
  CTQ29802.1  24 RDALNQAAEDLNQRLQDLKERTRVTNTEQLVFIAALNISYELTQ-EKAKTRDYASSMEQRIRMLQQTIEQA 93 
                 44556666777777777777776555544444444444444444.35567888889998888888888765 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   7.9e-05      0.14      25      71 ..      22      87 ..      21      93 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.9e-05
        YtxH 25 etRkdlkekaddlkekakelleeakeka...................kekaedlkekvkekadelk 71
                e R+ l+++a+dl +++++l+e+++ +                    k k+ d+++++++++  l+
  CTQ29802.1 22 EQRDALNQAAEDLNQRLQDLKERTRVTNteqlvfiaalnisyeltqeKAKTRDYASSMEQRIRMLQ 87
                569999999***********9999999999999*****9999999998889999999998876655 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3   0.00049      0.88      16      39 ..      22      45 ..      18      53 .. 0.88
   2 ?    3.6   0.4     0.038        67      15      34 ..      73      92 ..      62     100 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00049
     DUF2205 16 earerLqqqakeLqssLqaLaerv 39
                e+r++L+q a+ L++ Lq+L er 
  CTQ29802.1 22 EQRDALNQAAEDLNQRLQDLKERT 45
                89******************9995 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.038
     DUF2205 15 rearerLqqqakeLqssLqa 34
                r+    ++q++ +Lq++ ++
  CTQ29802.1 73 RDYASSMEQRIRMLQQTIEQ 92
                55566789999999999864 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2    0.0055       9.8      54      77 ..      25      48 ..      21      51 .. 0.81
   2 ?    7.2   0.8    0.0033       5.9       8      36 ..      64      92 ..      59      97 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0055
                HHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100 54 eewkqaaqklvdaLeeisealkqa 77
                + ++qaa++l++ L+++ e ++ +
  CTQ29802.1 25 DALNQAAEDLNQRLQDLKERTRVT 48
                578999999999999999988766 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0033
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  8 elrqaaarfqkqaeeledelqrlkaevda 36
                el+q  a+ ++ a+++e++++ l++++++
  CTQ29802.1 64 ELTQEKAKTRDYASSMEQRIRMLQQTIEQ 92
                577888899*****************987 PP

>> DUF5320  Family of unknown function (DUF5320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.6    0.0056        10      72      96 ..      21      45 ..      12      48 .. 0.88
   2 ?    5.7   0.3     0.017        31      63      91 ..      64      92 ..      45      97 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0056
     DUF5320 72 eeekelLeeqaeaLeeeleaikkrl 96
                 e++++L++ ae L+++l+++k+r 
  CTQ29802.1 21 PEQRDALNQAAEDLNQRLQDLKERT 45
                689999***************9985 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.017
     DUF5320 63 aaetaeaskeeekelLeeqaeaLeeelea 91
                + ++++a++++ ++ +e+++++L++ +e+
  CTQ29802.1 64 ELTQEKAKTRDYASSMEQRIRMLQQTIEQ 92
                45677888889999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1636  (0.0912488); expected 358.6 (0.02)
Passed bias filter:                      755  (0.0421105); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 897.34
//
Query:       CTQ29803.1  [L=198]
Description: putative ligase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-45  153.9   0.0    4.8e-45  153.7   0.0    1.0  1  5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family


Domain annotation for each model (and alignments):
>> 5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.7   0.0   2.7e-49   4.8e-45       2     187 .]      12     192 ..      11     192 .. 0.99

  Alignments for each domain:
  == domain 1  score: 153.7 bits;  conditional E-value: 2.7e-49
                     HHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHTSHHHHH-SEEEE----TTS---HHHHHHHHHTTEEEEEEEECSSCTEECEEEEEECCCCCCCC CS
  5-FTHF_cyc-lig   2 qelRkqllaalralseeevaaesealsqrieslkesqeakrvalyvsvkgeidtkelikklleegkevllPrvrlesgslkvvrlttlkeedsle 96 
                     q +R+q+++++rals e+++  ++++ +r+ +++    a++val++s++ge dt++li++l+++gk+v+lP++++ s  +  + +  ++++++l+
      CTQ29803.1  12 QHIRQQIRDRRRALSPEQQRLFAQQAAERMMAWPPIVLAHNVALFLSFDGELDTQPLIDQLWRAGKRVYLPVLHPFS--PGNLLFLHYHPQSQLI 104
                     89***************************************************************************..9999999********* PP

                     CHCTSSCE--TTECCBCGGGG-SEEEE--SEEETTS-EE-SSTTHHHHHHHHHTST-SS--EEEEE--GGGEES-----ST----SEEE-S CS
  5-FTHF_cyc-lig  97 sgkyglkePeeeeerelalekldlvlvPgvAfdkeGaRlGkGkGyyDrflarlkggagdkpltvglaldeqlverlPleehDvpvdevvte 187
                      ++ ++ eP+   +  l+l++ld++++P vAfd  G RlG+G+G+yDr+l+++++    +  +vg a d+q+v++lP+ee+D+p+ +v+t+
      CTQ29803.1 105 VNRLKIREPKLDVRDVLPLAELDVLVTPLVAFDVSGQRLGMGGGFYDRTLQNWQQ---YRLQPVGYAHDCQQVDSLPSEEWDIPLPAVITP 192
                     *******************************************************...999****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1622.25
//
Query:       CTQ29804.1  [L=410]
Description: D-3-phosphoglycerate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-52  176.6   0.0    4.7e-52  175.9   0.0    1.3  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    7.4e-37  126.0   0.0    1.2e-36  125.4   0.0    1.3  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    8.2e-07   28.7   0.0    2.1e-06   27.4   0.0    1.7  1  ACT            ACT domain
    2.1e-05   24.7   1.1    0.00015   21.9   0.1    2.4  3  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
  ------ inclusion threshold ------
      0.022   14.6   0.1       0.89    9.4   0.0    2.5  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
      0.041   14.5   0.0      0.098   13.3   0.0    1.6  1  ACT_4          ACT domain
      0.049   13.7   0.2       0.13   12.3   0.1    1.8  2  Ldh_1_N        lactate/malate dehydrogenase, NAD binding doma


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   0.0   1.8e-55   4.7e-52       3     178 .]     119     294 ..     117     294 .. 0.93

  Alignments for each domain:
  == domain 1  score: 175.9 bits;  conditional E-value: 1.8e-55
                   HHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S CS
  2-Hacid_dh_C   3 lllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhl 99 
                    ll +lr ++ea+++ ++g w +++a+ + e +gk++GiiG+G+IG+++  +++++gm+v++yd  +k       +  +++ l +ll+ sD+vslh+
    CTQ29804.1 119 ELLLMLRGVPEANAKAHRGVW-NKQAVGSFEARGKKLGIIGYGHIGTQLGILAESLGMHVFFYDIENKLPL---GNATQVQHLSDLLNMSDVVSLHV 211
                   67899****************.9999****************************************88444...2344788**************** PP

                   --STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTC....HHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C 100 pltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplped....spllelpnviltPHia 178
                   p +++t+++++aeela+mk+ga+liN++RG++vd  aL++aL s+++agaa+Dvf +ep++++    spl+e++nviltPHi+
    CTQ29804.1 212 PENASTKNMMGAEELALMKPGALLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSdpftSPLCEFDNVILTPHIG 294
                   *************************************************************984444577***********98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   4.6e-40   1.2e-36       2     134 .]      14     326 ..      13     326 .. 0.99

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 4.6e-40
                 EEEST.CHHHHHHHHHTTE.EEEEES.CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHH CS
                 xxxxxxxxxxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   2 lileplreeelellkeegv.evevkd.ellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesv 98 
                 l++e ++++++++l+++g+ ++e+++ +l++e+l++ ++da+++ +rs+t++t+e+++a++kL  ++++++G+++vDl+aa++rGi V+n+p ++t+sv
  CTQ29804.1  14 LLVEGVHQKAIDSLRAAGYtNIEFHKgALDSEQLKASIRDAHFIGLRSRTHLTEEIFAAAEKLVAVGCFCIGTNQVDLNAAAKRGIPVFNAPFSNTRSV 112
                 788999********************************************************************************************* PP

                 HHHH............................................................................................... CS
                 xxxx............................................................................................... RF
  2-Hacid_dh  99 AElt............................................................................................... 102
                 AEl+                                                                                               
  CTQ29804.1 113 AELVigelllmlrgvpeanakahrgvwnkqavgsfeargkklgiigyghigtqlgilaeslgmhvffydienklplgnatqvqhlsdllnmsdvvslhv 211
                 *************************************************************************************************** PP

                 ...................................................................................T-BHHHHHHHHHHHHH CS
                 ...................................................................................xxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ...................................................................................aaTeeaqeniaeeaae 118
                                                                                                    ++T+eaqeni+ e+a 
  CTQ29804.1 212 penastknmmgaeelalmkpgallinasrgtvvdipalcdalaskhlagaaidvfptepatnsdpftsplcefdnviltphigGSTQEAQENIGLEVAG 310
                 *************************************************************************************************** PP

                 HHHHHHTTCCGTTBCS CS
                 xxxxxxxxxxxxxxxx RF
  2-Hacid_dh 119 nlvaflkgespanavn 134
                 +l ++ +++s+ +avn
  CTQ29804.1 311 KLAKYSDNGSTLSAVN 326
                 **************98 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   8.2e-10   2.1e-06       8      66 ..     345     401 ..     340     402 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 8.2e-10
                 ESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHTTC CS
         ACT   8 pDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkkle 66 
                 ++rPG+L ++ +++a   iNi+     +s     g+v++ i+++e++++++l+a k+++
  CTQ29804.1 345 ENRPGVLTAINQIFAAQSINIAAQYLQTSPQ--MGYVVIDIEAEEDVAQQALQAMKAIP 401
                 7******************************..7**********************998 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.18   4.6e+02     101     141 ..      91     133 ..      17     141 .. 0.79
   2 !   21.9   0.1     6e-08   0.00015       1     108 [.     153     257 ..     153     265 .. 0.90
   3 ?   -3.1   0.1         3   7.6e+03      40      76 ..     360     396 ..     353     403 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.18
                    HHHHHHTT-EEEEEEEESHHHHHH..HT-EEEEEEE-HHHHHH CS
  NAD_binding_2 101 akelkekglkfldaPVSGGeegAe..kGtLsimvGGseeafer 141
                     ++++++g+ +++aP S +   Ae   G+L +m+ G  ea ++
     CTQ29804.1  91 LNAAAKRGIPVFNAPFSNTRSVAElvIGELLLMLRGVPEANAK 133
                    4568899999999999988887763358999998887777665 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 6e-08
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HH CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstsspe 95 
                    k+g+iG G +G+++    ++ g++v +y+ +    ++l   +a+ ++ +++l++  dvv + v++++ +++++    l+ +k+g++li+ s   + 
     CTQ29804.1 153 KLGIIGYGHIGTQLGILAESLGMHVFFYDIE----NKLPLGNATQVQHLSDLLNMSDVVSLHVPENASTKNMMGAeELALMKPGALLINASRGTVV 244
                    68***************************99....67777889999**************************98888899*********9988888 PP

                    HHHHHHHHHHHTT CS
  NAD_binding_2  96 dtrelakelkekg 108
                    d   l ++l++k 
     CTQ29804.1 245 DIPALCDALASKH 257
                    7777777777665 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3
                    HTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSH CS
  NAD_binding_2  40 aegakaaesieelvasldvvitmvkagkavdeviegl 76 
                    a+ +++a++  +   ++  v++ ++a+++v +   + 
     CTQ29804.1 360 AQSINIAAQYLQTSPQMGYVVIDIEAEEDVAQQALQA 396
                    4455566666666666677777777777776665554 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00035      0.89       1      34 [.     153     186 ..     153     203 .. 0.86
   2 ?    3.1   0.0     0.031        79      70     112 ..     194     237 ..     187     260 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00035
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseea 34 
                 k+++iG G +G+++  ++ s g++V  +di+++ 
  CTQ29804.1 153 KLGIIGYGHIGTQLGILAESLGMHVFFYDIENKL 186
                 579***************************8864 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.031
                 ES-HHHHH.C-SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE CS
     3HCDH_N  70 ttdleeav.dadlviEavvEnlelKrkvfaelekiakpdailas 112
                  ++l+++    d+v   v+En + K+ + ae  +++kp a+l+ 
  CTQ29804.1 194 VQHLSDLLnMSDVVSLHVPENASTKNMMGAEELALMKPGALLIN 237
                 5677788877899999************************9964 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.8e-05     0.098      12      55 ..     343     386 ..     339     405 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.8e-05
       ACT_4  12 eaedrkglLaditqviseekanivsvnaktrkkdglaeikitve 55 
                 + e+r+g+L+ i q+++++ +ni +  ++t  + g++ i+i+ e
  CTQ29804.1 343 IHENRPGVLTAINQIFAAQSINIAAQYLQTSPQMGYVVIDIEAE 386
                 568***************************99999999998755 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.9   1.3e+04      98     125 ..      66      93 ..      63      96 .. 0.76
   2 ?   12.3   0.1   5.1e-05      0.13       2      59 ..     153     207 ..     152     223 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.9
                 HHHHHHHHHHHTTTSEEEE-SSSHHHHH CS
     Ldh_1_N  98 vkeiveaiakvapnaivlvvsNPvdilt 125
                 ++ei +a +k     ++++ +N vd+++
  CTQ29804.1  66 TEEIFAAAEKLVAVGCFCIGTNQVDLNA 93 
                 5677777888888888899999999876 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 5.1e-05
                 EEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEE CS
     Ldh_1_N   2 kvavvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvkvkv 59 
                 k+ ++G  G iG +l +  +++ l+ ++ ++Di+++   G+a+ ++h s  l+++  v
  CTQ29804.1 153 KLGIIGY-GHIGTQLGI--LAESLGMHVFFYDIENKLPLGNATQVQHLSDLLNMSDVV 207
                 788****.****99875..567899999*******************98777665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3094.82
//
Query:       CTQ29805.1  [L=219]
Description: ribose 5-phosphate isomerase, constitutive [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-58  196.4   0.5    3.2e-58  196.1   0.5    1.1  1  Rib_5-P_isom_A  Ribose 5-phosphate isomerase A (phosphoribois
    0.00011   22.1   0.1     0.0012   18.7   0.0    2.3  2  DeoRC           DeoR C terminal sensor domain


Domain annotation for each model (and alignments):
>> Rib_5-P_isom_A  Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.1   0.5   3.6e-62   3.2e-58       2     173 .]      49     213 ..      48     213 .. 0.97

  Alignments for each domain:
  == domain 1  score: 196.1 bits;  conditional E-value: 3.6e-62
                     EEESSHHHHHHHHHTT--BE-GGCCSSEEEEEE--SEEETTS-EE--TTS-HHHHHHHHHTEEEEEEEEEGGGBESSTTSS-EEEEE-GGGHHHH CS
  Rib_5-P_isom_A   2 gvptSeqteelaeelgipllsldeveeidlaiDGaDevdedlnliKGgGgallrEKivaaaakkfiviadesKlveklgkfpvPveVlpfaleav 96 
                     +v++S++++e++++lgi++ +l++v+++ +++DGaDe++ ++++iKGgG+al+rEKi+a++a+kfi+iad sK+v+ lgkfp+PveV+p+a++av
      CTQ29805.1  49 AVSSSDASTEKLKSLGITVFDLNSVDRLGIYVDGADEINGHMQMIKGGGAALTREKIIASVADKFICIADASKQVDILGKFPLPVEVIPMARSAV 143
                     69********************************************************************************************* PP

                     HHHHHHTTT-EEEE-TETTTTEE-B-TTS-EEEEEESSSBSSSHHHHHHHHHTSTTEEEESEE-S.--SEEEEEETTC CS
  Rib_5-P_isom_A  97 arelekllggkpelReakgkdgpvvTdngnlilDvkfeekiedpeelekelksipGVvetGlFlg.ladkvlvgkedg 173
                     ar+l kl gg+pe+R+  g    vvTdngn+ilDv+  e++ d+ +le++++ ipGVv++GlF++  ad +l+g++dg
      CTQ29805.1 144 ARQLVKL-GGRPEYRQ--G----VVTDNGNVILDVHGLEIL-DAIALENAINGIPGVVTVGLFANrGADVALIGTADG 213
                     *****75.*******8..6....**************8877.**********************989********997 PP

>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.4e-07    0.0012       3      41 ..       4      42 ..       2      56 .. 0.91
   2 ?    0.5   0.1     0.056     5e+02     120     138 ..     103     121 ..      72     124 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.4e-07
       DeoRC  3 aeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaek 41
                 e K++++ aA++++++g ++ +++G+T++++++aL   
  CTQ29805.1  4 DELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTM 42
                578********************************9765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.056
       DeoRC 120 kralieaarrvillaDssK 138
                 ++ +++ a++ i +aD sK
  CTQ29805.1 103 EKIIASVADKFICIADASK 121
                 57788999999*****999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1791.14
//
Query:       CTQ29806.1  [L=297]
Description: DNA-binding transcriptional activator, replication initiation inhibitor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-19   67.5   1.5    1.1e-18   66.9   0.1    2.1  3  HTH_1           Bacterial regulatory helix-turn-helix protein
    1.3e-13   50.8   1.6      2e-13   50.2   1.6    1.2  1  LysR_substrate  LysR substrate binding domain
  ------ inclusion threshold ------
      0.035   13.9   0.0      0.079   12.8   0.0    1.6  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.1   1.9e-22   1.1e-18       2      60 .]       7      64 ..       6      64 .. 0.97
   2 ?   -3.3   0.1       1.5   9.2e+03      30      40 ..      69      79 ..      68      82 .. 0.74
   3 ?   -2.1   0.0      0.67     4e+03       5      15 ..     225     235 ..     222     236 .. 0.85

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 1.9e-22
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                r l++++av +e+ f rAA++L ++q+avs++ik+LE+ +g+pL++R +   r+Te+G+
  CTQ29806.1  7 RTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPLLVR-TVPPRPTEQGQ 64
                679********************************************.889*******7 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.5
                HHHHHHHHHHH CS
       HTH_1 30 vsrqikrLEee 40
                + rq+  LEee
  CTQ29806.1 69 LLRQVELLEEE 79
                66888888875 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.67
                 HHHHHHHHHSS CS
       HTH_1   5 rlfvavaeegs 15 
                 ++fv++a++g+
  CTQ29806.1 225 EAFVQLARQGT 235
                 78******995 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   1.6   3.4e-17     2e-13       8     205 ..      93     287 ..      89     290 .. 0.89

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 3.4e-17
                     EEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG...SSSECGG CS
  LysR_substrate   8 LrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar...gepvsle 99 
                     L++++  +  +++l p+la  +   P ++l+l+++d ++  ++l++ge+  a+  +p++ ++  +++L+   ++ vas++  +a+      v+ +
      CTQ29806.1  93 LSLAVNADSLATWLLPALANVLSDSP-IRLNLQVEDETRTQERLRRGEVVGAVSIQPQALPSCLVDQLGALDYLFVASKE--FAQryfPNGVTRS 184
                     78899999999**********99999.9****************************************************..67779*99***** PP

                     GGCTSEEEEESTTSTHHHHHHHHHHCTTEEC....EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETT CS
  LysR_substrate 100 dLadeplilleegsglrdlledalreaglkp....rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkg 190
                     +L + p + +++   +++++++     ++++     + + vns ea ++l+++G   +++p++ +++el++g+l+  +l +  l ++  l++++ 
      CTQ29806.1 185 ALLKAPVVAFDHLDDMHQAFLQQ----NFDLppgsVPCHIVNSSEAFVQLARQGTTCCMIPHLQIEKELNSGELI--DLTP-GLFQRRMLYWHRF 272
                     *********87666666666644....33333366999*************************************..6666.677778899***9 PP

                     CCCHHHHHHHHHHHH CS
  LysR_substrate 191 relspavrafidflr 205
                      + s+ +r++ d+l 
      CTQ29806.1 273 APESRMMRRVTDALI 287
                     999999999999885 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.3e-05     0.079       3      44 ..      10      50 ..       8      54 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.3e-05
                .HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30  3 eTLraylenggnisatAkaLhvHrnTlryRLrrieellgldl 44
                + L+a +++ +  +++A++L +    +++R++++e ++g +l
  CTQ29806.1 10 QALDAVIRE-RGFERAAQKLCITQSAVSQRIKQLENMFGQPL 50
                566677765.77899***********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2246.10
//
Query:       CTQ29807.1  [L=255]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-45  154.4   6.6    6.1e-45  154.1   6.6    1.1  1  SIMPL      Protein of unknown function (DUF541)
  ------ inclusion threshold ------
      0.011   15.9   0.0       0.13   12.5   0.0    2.4  2  DUF1611_N  Domain of unknown function (DUF1611_N) Rossmann-li


Domain annotation for each model (and alignments):
>> SIMPL  Protein of unknown function (DUF541)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.1   6.6   6.9e-49   6.1e-45       1     200 []      30     231 ..      30     231 .. 0.93

  Alignments for each domain:
  == domain 1  score: 154.1 bits;  conditional E-value: 6.9e-49
       SIMPL   1 ItVtGsaevevapDqatltlsvesegkdaaeakaevaekmnavlealkklgikekdiqtsslslkpeysyengknkitgyeasqsltvkfrdldklgev 99 
                 I  +G+a+v ++pD+atl ++v +++kdaa+ak+++++++++ l++l+k gi++kdi +++l+++p+y+y+ngk  ++gy+a ++++v++r+ldkl+ +
  CTQ29807.1  30 IVTSGTASVAAVPDIATLAIEVNVSAKDAASAKKQADDRVAQYLSFLEKSGIAKKDINSANLRTQPDYDYQNGKSILKGYRAVRTVEVTLRQLDKLNGL 128
                 5679********************************************99************************************************* PP

       SIMPL 100 ldaavka.aneingvsfslsdedelrdeareeAvkdArakAealAkalgvklgkvvsisesgsnpyappapamaaaaaa.aasaatpfepgeievtasV 196
                 ld a+ka  nei++vs++++++d+++d+ar++A++dA ++A++lA+ + +klg+v+s+++  sn++++p+ +m+ aa a  +sa++ +e  +i++  +V
  CTQ29807.1 129 LDGALKAgLNEIRSVSLGVAQPDAYKDKARKAAIDDAVHQAQELAAGFHSKLGPVYSVRYHVSNYQPSPMVRMMKAADAaPVSAQETYEQATIQFDDQV 227
                 **********************************************************9955555555555555555556999999999999******* PP

       SIMPL 197 tvvf 200
                  vvf
  CTQ29807.1 228 DVVF 231
                 **98 PP

>> DUF1611_N  Domain of unknown function (DUF1611_N) Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.08   7.2e+02      57      90 ..      24      57 ..      14      60 .. 0.84
   2 ?   12.5   0.0   1.4e-05      0.13      29      72 ..     138     181 ..     116     193 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.08
   DUF1611_N 57 leaGldvvsGlHerLsddpelaalakkkgvkiiD 90
                l  G ++v++    ++  p++a la + +v+ +D
  CTQ29807.1 24 LPDGPHIVTSGTASVAAVPDIATLAIEVNVSAKD 57
                5568899999999999999999999998887766 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.4e-05
   DUF1611_N  29 agaevlviGiapeggklpeswreavkeAleaGldvvsGlHerLs 72 
                 ++++++ +G+a ++ + +++ ++a+++A+ +  +++ G+H++L 
  CTQ29807.1 138 NEIRSVSLGVAQPDAYKDKARKAAIDDAVHQAQELAAGFHSKLG 181
                 6778899**********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1914.22
//
Query:       CTQ29808.1  [L=211]
Description: arginine transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-55  185.3  17.8    8.8e-55  185.2  17.8    1.0  1  LysE          LysE type translocator
  ------ inclusion threshold ------
        5.1    6.9   6.9        1.1    9.0   0.8    2.2  2  TMEM208_SND2  SRP-independent targeting protein 2/TMEM208


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.2  17.8   9.8e-59   8.8e-55       2     192 ..      14     201 ..      13     202 .. 0.96

  Alignments for each domain:
  == domain 1  score: 185.2 bits;  conditional E-value: 9.8e-59
        LysE   2 slllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksve..aslvk 98 
                 +++l++Gpqn++v++qgi+r+  +++++al+++++d++li++g++G ++Ll+++p++l++++++G+a+Llw+g+ al++a++++ e +++    + ++k
  CTQ29808.1  14 AMILPLGPQNAFVMNQGIRRQ--YHLMIALLCAVSDLLLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGALKTAFSQSLELANAEVmqQGRWK 110
                 689******************..***********************************************************99866655547899*** PP

        LysE  99 pflkglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvlriinvvvgvlligfavkllle 192
                 +++++l+++++NP+++l++++v+++l++   q  ++   ++a+g+++as++wf+ la+laa+l++rl++ +++riin+vvg++++++a++l++e
  CTQ29808.1 111 IIITMLAVTWLNPHVYLDTFVVLGSLGG---QLAVEPKRWFALGTISASFLWFFGLALLAAWLAPRLRTARAQRIINIVVGAVMWFIAFQLARE 201
                 ****************************...9***********************************************************987 PP

>> TMEM208_SND2  SRP-independent targeting protein 2/TMEM208
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.8   0.00013       1.1      94     140 ..      45      91 ..      37     111 .. 0.80
   2 ?    1.0   0.7     0.035   3.2e+02      19      68 ..     152     202 ..     146     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00013
  TMEM208_SND2  94 mfDviyltwivqvlsilfgnkfWllylviPayalYklwglilgpaff 140
                   + D++++++++  +s+l+ +  Wll lv  + ++++lw  + + +  
    CTQ29808.1  45 VSDLLLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGALKTA 91 
                   67************************************998865333 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.035
  TMEM208_SND2  19 nlrlislavnalylllrlll.rsslrprslllylllslpalllyyvlekmg 68 
                   +++  +l + +l+ll+ +l  r ++   + ++ +++ ++++++ ++l++ g
    CTQ29808.1 152 TISASFLWFFGLALLAAWLApRLRTARAQRIINIVVGAVMWFIAFQLAREG 202
                   556667777888889999987666667788889999999999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1609.85
//
Query:       CTQ29809.1  [L=285]
Description: mechanosensitive channel [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.7e-58  195.9   1.7    5.7e-58  195.9   1.7    1.5  2  MS_channel  Mechanosensitive ion channel
    5.6e-15   55.1   3.3    5.6e-15   55.1   3.3    2.3  2  TM_helix    Conserved TM helix


Domain annotation for each model (and alignments):
>> MS_channel  Mechanosensitive ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.8      0.59   5.3e+03       3      22 ..      31      50 ..      26      57 .. 0.53
   2 !  195.9   1.7   6.4e-62   5.7e-58       3     206 .]      72     268 ..      70     268 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.59
                HHHHHHHHHHHHHHHHTTT- CS
  MS_channel  3 ilkiliivvgilivlsllgv 22
                i++ ++i+++ +iv  ++  
  CTQ29809.1 31 IVAAIAILIVGMIVARVVSN 50
                44445555555555444444 PP

  == domain 2  score: 195.9 bits;  conditional E-value: 6.4e-62
                 HHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTT-SS-TT-EEESSSEEEEEEEE-SSEEEEEETTSEEEEEEHHHH CS
  MS_channel   3 ilkiliivvgilivlsllgvnvsallavlGalglalglalkdlisnlvaGiillfekpfkiGDlveigdieGtVediglrttkirtfdgrivtiPnssl 101
                 ++++ +i+++++++l  +gv++++++avlGa+gla+glal+ ++snl+aG++l++ +pf+ G++v++g+++GtV ++++++t++rt dg++v++Pn ++
  CTQ29809.1  72 LVRYAVIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLNVQIFSTTLRTADGKVVVVPNGKI 170
                 799************************************************************************************************ PP

                 HTS-EEESSS.SSEEEEEEEEEE-TTS-...HHHHHHHHHHHHHH-TTB-TTS-EEEEEEEE-SSSEEEEEEEEEET...TTHHHHHHHHHHHHHHHHH CS
  MS_channel 102 vtsnieNlsresgtrrikvsigvtyssdvkklekvleelkealkekpevlkdkellvvldefgdsslnfevrvfvktvvpeeylsvqseinlrikkile 200
                 +  ni+N+sr +++rr ++ igv+y++d   ++kv + l  +++++ ++l+d e++v+l+e+g+ss+nf vrv+ k+   ++ ++v+ +i +rik++++
  CTQ29809.1 171 IAGNIINFSR-EPARRNEFIIGVAYDAD---IDKVKQLLTSIIESDDRILRDREMTVRLNELGASSVNFVVRVWSKS---SDLQNVYWDILERIKREFD 262
                 **********.*****************...**********************************************...******************* PP

                 HHT--- CS
  MS_channel 201 eegiei 206
                 ++gi++
  CTQ29809.1 263 ANGISF 268
                 ****86 PP

>> TM_helix  Conserved TM helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   3.3   6.2e-19   5.6e-15       1      50 []      15      64 ..      15      64 .. 0.97
   2 ?   -1.6   0.7       0.3   2.7e+03      17      27 ..      77      87 ..      65     101 .. 0.69

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 6.2e-19
                XXXXSXXHHHHTTHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH CS
    TM_helix  1 nplnnllnellsflPnLvgAilILlvGwiiAkfvsrlvtkllaktgiddt 50
                ++l  +++ lls+ +n+v+Ai+IL+vG+i+A++vs+ v++l+ +++id t
  CTQ29809.1 15 TWLARNQELLLSYAVNIVAAIAILIVGMIVARVVSNTVNRLMLARKIDAT 64
                799*********************************************86 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.3
                HHHHHHHHHHH CS
    TM_helix 17 LvgAilILlvG 27
                ++++ lI+++G
  CTQ29809.1 77 VIAFTLIAALG 87
                46666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1000  (0.0557756); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2221.67
//
Query:       CTQ29810.1  [L=359]
Description: fructose-bisphosphate aldolase, class II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-89  300.4   0.1    1.6e-89  300.2   0.1    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II
  ------ inclusion threshold ------
       0.14   11.7   0.1       0.22   11.0   0.1    1.4  1  MR_MLE_C       Enolase C-terminal domain-like


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.2   0.1   1.7e-93   1.6e-89       2     277 ..      17     355 ..      16     357 .. 0.92

  Alignments for each domain:
  == domain 1  score: 300.2 bits;  conditional E-value: 1.7e-93
                    HHHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-..............HHHHHHHHHHHHHHHHT...-EEEEEE CS
  F_bP_aldolase   2 nlkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyag..............gaealaelvraaaeaykkasvpvalhl 83 
                    +++++++ Ake+++a++a+n++ +++++avleaa++ +sPvI+q+s+g+aa++ag              ga++ a++v+++ae+y+   vpv+lh+
     CTQ29810.1  17 DVQKVFQVAKENNFALPAVNCVGTDSINAVLEAAAKVRSPVIVQFSNGGAAFIAGkgvktdvpqgaailGAISGAHHVHQMAEHYG---VPVILHT 109
                    6899***********************************************9988****************************888...******* PP

                    ----G.....HHHHHHHHHH........S-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------....TT-TTTS--HHHHHH CS
  F_bP_aldolase  84 DHgak.....leglkkaiea........gfsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgv....vaeeklyTdpeeaee 162
                    DH+ak     ++gl++a e+        +fsS+MiD+Se++l eNi+++ ++++r++++g+++E+ElG++ggeedgv     ++++lyT+pe++  
     CTQ29810.1 110 DHCAKkllpwIDGLLDAGEKhfaatgkpLFSSHMIDLSEESLHENIEICSKYLARMAKMGMTLEIELGCTGGEEDGVdnshMDASALYTQPEDVDY 205
                    **********9999999999999999999***********************************************9665444455********** PP

                    HHHHHH....-EEEE--SS---SS--SS....--THHHHHHHHHH..........--SEE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHH CS
  F_bP_aldolase 163 fveetg....vdalAvaiGnvHGvykpkpk..Ldferlkeiqkav..........vplVlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkav 242
                     ++e++     +++A+++GnvHGvykp+ +  L + +l++ q++v           ++V+HGgsg++ +ei++ +++GvvK+Nidtd+++a+++++
     CTQ29810.1 206 AYTELSkispRFTIAASFGNVHGVYKPG-NvvLTPTILRDSQEYVskkhnlphnsLNFVFHGGSGSSAQEIKDSVSYGVVKMNIDTDTQWATWDGI 300
                    ****************************.447**************999877655558************************************** PP

                    HHG...................GE-HH.H-HHHHHHHHHHHHHHHHHHHHHHTT- CS
  F_bP_aldolase 243 kke...................kenkk.ydprkllkeaeeamkevvkekiellgs 277
                     ++                   ++nkk ydpr++l++a+ +m ++++++++ l++
     CTQ29810.1 301 LQYykaneaylqgqlgnpkgedQPNKKyYDPRVWLRAAQTSMVTRLEQAFKELNA 355
                    44444445566666665555544999************************99875 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   2.5e-05      0.22     132     156 ..      85     109 ..      77     174 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.5e-05
                 HTSHHHHHHHHHHHHHTT-EEEEBS CS
    MR_MLE_C 132 vgGitearkvaalaeafgvpvapHs 156
                  g i++a  v ++ae++gvpv++H+
  CTQ29810.1  85 LGAISGAHHVHQMAEHYGVPVILHT 109
                 57899*******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2610.74
//
Query:       CTQ29811.1  [L=387]
Description: phosphoglycerate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.3e-138  462.0   0.5   1.5e-138  461.9   0.5    1.0  1  PGK         Phosphoglycerate kinase
  ------ inclusion threshold ------
       0.12   12.6   0.0        4.4    7.7   0.0    2.5  2  TFIIE_beta  TFIIE beta subunit core domain


Domain annotation for each model (and alignments):
>> PGK  Phosphoglycerate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  461.9   0.5  1.7e-142  1.5e-138       1     378 []       6     373 ..       6     373 .. 0.96

  Alignments for each domain:
  == domain 1  score: 461.9 bits;  conditional E-value: 1.7e-142
                 GGGS--TT-EEEEEE-----EECTTEES--HHHHHHHHHHHHHHHTT-EEEEEE--S--TT..S-GGG-SHHHHHHHHHHHTT-EEEESSTTSHHHHHH CS
         PGK   1 vkdldlkgkrvlvRvDfNvplkkegkitddtriraalpTikyllekgakvvllsHlgrpkg..ekeklslkpvaerLsellgkeVkfvedvvgeeveea 97 
                 ++dldl+gkrv++R+D+Nvp+k+ gk+t+d rira+lpTi+ +l++gakv+++sHlgrp +   +e++sl pv+++L++ l+++V++v+d+++  ve  
  CTQ29811.1   6 MTDLDLAGKRVFIRADLNVPVKD-GKVTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEgeYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDG-VE-- 100
                 689******************87.***********************************775667*************************9999.44.. PP

                 HHT-TTT-EEEES-GGGSTTTTTT-HHHHHHHHHT-SEEEE--GGGTTS--TTTTHHHHCS.EEEE-HHHHHHHHHHHHHHHS--SSEEEEEEES-HHH CS
         PGK  98 iaelkegevllLeNvrfykeEekndeelakklasladvyVnDAFgtahrahaStvgiakvl.saaaGllmekElealskvlenperplvailGGakvsd 195
                    +++ge+++LeNvrf+k+E+k+deel+kk+a+l+dv+V+DAFgtahra+aSt+gi k++  a+aG l+++El+al k+l++p+rp+vai+GG+kvs+
  CTQ29811.1 101 ---VAAGELVVLENVRFNKGEKKDDEELSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFAdVACAGPLLAAELDALGKALKEPARPMVAIVGGSKVST 196
                 ...678*******************************************************655*********************************** PP

                 CHHHHHHHTTT-SEEEEETCHHHHHHHHTT-B-TTSS--GGGHHHHHHHHHHHHHHT-EEE--SEEEEESSSSTTS..EEEECCG--TT-EEEEE-HHH CS
         PGK 196 kikvienLlekvdkliigGgmantFlkaqgleigkslveedklelakellekakkkgvkillpvDvvvakeeaeke.akvveveaipedemalDigpkt 293
                 k++v+++L + +d+li+gGg+antF++aqg+++gksl+e+d ++ ak+ll +++     i +p+Dv va+e +e++ a++++v++i++de++lD+g+ +
  CTQ29811.1 197 KLTVLDSLSKIADQLIVGGGIANTFVAAQGHNVGKSLYEADLVDEAKRLLGTCD-----IPVPTDVRVATEFSETAtATLKSVNDIKDDEQILDLGDVS 290
                 ***************************************************996.....***********96555448999****************** PP

                 HHHHHHHHCC-SEEEEES-SS-TTSGCCCHHHHHHHHHHHHHCHTSEEEEESHHHHHHHHHTT-GGGSSEEESSSHHHHHHHCTS CS
         PGK 294 ielfaeaikeaktvvwnGpmGvfeiekfakGTkaiakalaeatkgalsivGGgdsaaaveklgladkvshvStGGgAsLelLegk 378
                 ++++ae++k+akt++wnGp+Gvfe+++f+kGT+ +a+a+a+++   +si+GGgd++aa++ +g+adk+s++StGGgA+Le++egk
  CTQ29811.1 291 AQKLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEG--FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGK 373
                 *****************************************965..**************************************8 PP

>> TFIIE_beta  TFIIE beta subunit core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.027   2.4e+02       5      21 ..      74      91 ..      72     106 .. 0.85
   2 ?    7.7   0.0   0.00049       4.4      19      62 ..     272     315 ..     259     317 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.027
  TFIIE_beta  5 LakiveylKk.kdgplsl 21
                L+ +v+ylK  +++p++l
  CTQ29811.1 74 LLPVVNYLKDkLSNPVRL 91
                6779******88889987 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00049
  TFIIE_beta  19 lsleeIlsylslqldls.dknwllleaLknnpkieyDpkkgkfsf 62 
                 +s+++I +  ++ ldl+    ++l+e+Lkn + i +++  g f+f
  CTQ29811.1 272 KSVNDIKDDEQI-LDLGdVSAQKLAEILKNAKTILWNGPVGVFEF 315
                 6899**999997.8888767899***********99887777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2968.33
//
Query:       CTQ29812.1  [L=342]
Description: D-erythrose 4-phosphate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-55  187.0   0.3    2.2e-55  186.6   0.3    1.2  1  Gp_dh_C        Glyceraldehyde 3-phosphate dehydrogenase, C-te
    1.7e-33  115.0   0.1      1e-32  112.5   0.0    2.1  2  Gp_dh_N        Glyceraldehyde 3-phosphate dehydrogenase, NAD 
    0.00024   21.8   0.1    0.00087   19.9   0.1    1.9  1  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
      0.012   15.7   0.6       0.12   12.5   0.1    2.7  2  DapB_N         Dihydrodipicolinate reductase, N-terminus
      0.022   15.6   0.5      0.068   14.0   0.1    2.2  2  GFO_IDH_MocA   Oxidoreductase family, NAD-binding Rossmann fo
      0.023   15.0   0.1      0.049   13.9   0.1    1.6  1  TrkA_N         TrkA-N domain
       0.12   12.8   0.1       0.35   11.3   0.0    1.8  2  Asp23          Asp23 family, cell envelope-related function


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.6   0.3   8.5e-59   2.2e-55       1     158 []     160     316 ..     160     316 .. 0.99

  Alignments for each domain:
  == domain 1  score: 186.6 bits;  conditional E-value: 8.5e-59
                 HHHHHHHHHHHHEEEEEEEEEEEECTTTSBSSSS--.SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS-H CS
     Gp_dh_C   1 LaplakvlndkfgikkglmttvhaytndQkllDgpskkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekevtv 99 
                 ++p++k l+d++gi++g++tt+h++++dQ+++D+++  dlrr+raa+++iip++t+ a  +++++p+++ +++++AvrVPt+nv+++dl+v+++k+v++
  CTQ29812.1 160 IIPIIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKA 257
                 589******************************997.9************************************************************* PP

                 HHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGCEEETTTEEEEEEEE CS
     Gp_dh_C 100 eevnaalkeaaegalkgilsyteeelvssDlvgdphssifdaketivveenlvkvvawy 158
                  evn++l++aa+ga++gi++yte +lvs+D+++dphs+i+d ++t+v+  +l+k++ w+
  CTQ29812.1 258 CEVNQLLQKAAQGAFHGIVDYTELPLVSTDFNHDPHSAIVDGTQTRVSGAHLIKTLVWC 316
                 **********************************************************7 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5   0.0     4e-36     1e-32       1      99 [.       3     104 ..       3     106 .. 0.97
   2 ?   -0.2   0.0      0.51   1.3e+03      24      85 ..     254     317 ..     240     322 .. 0.68

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 4e-36
                 CEEEEESTSHHHHHHHHHHH...HHTTCEEEEEE-TS-HHHHHHHHHEETTTEC-SS-EEEETTEEEETTEEEEEE--SSGGGS-CHHHTSSEEEE-SS CS
     Gp_dh_N   1 vkvainGfGRIGrlvlrall...eekelevvaindltdletlayllkyDsvhgrfkgeveaeeealvvngkkikvlaekdpeelpwkelgvdlVvestG 96 
                 +++ainGfGRIGr+v+ral+   ++ e++vvain+l+d++ +a+llkyD+ hgrf  +v++e e+l v+++ i++l+e ++++lpw+el vd+V+++tG
  CTQ29812.1   3 IRIAINGFGRIGRNVVRALYesgRRAEITVVAINELADAAGIAHLLKYDTSHGRFAWDVRQERERLFVGDDAIRLLHEPTIAALPWRELAVDVVLDCTG 101
                 69******************987777************************************************************************* PP

                 S-- CS
     Gp_dh_N  97 vft 99 
                 v+ 
  CTQ29812.1 102 VYG 104
                 986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.51
                 TCEEEEEE-.TS-HHHHHHHHHEETT.TEC-SS-EEEETTEEEETTEEEEEE--SSGGGS-CHH CS
     Gp_dh_N  24 elevvaind.ltdletlayllkyDsv.hgrfkgeveaeeealvvngkkikvlaekdpeelpwke 85 
                  ++  ++n+ l ++++ a     D++    ++++ +++ ++ +v+g++ +v+ ++ ++ l w +
  CTQ29812.1 254 PVKACEVNQlLQKAAQGAFHGIVDYTeLPLVSTDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCD 317
                 5566667775455555555555555513445778888888899999999998888888888865 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   3.4e-07   0.00087       1      90 [.       9     123 ..       9     133 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.4e-07
                    --SHHHHHHHHHHHH---SSEEEEEEEEESSEEE-TT..................HHHHHT--CB---HHHHHHHH..........S-EEEEE-S- CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqseielelvavadrdsllskd..................rkallasealtldlddliahl..........dpdvvVEcas 68 
                    G+G iG+ v+++l ++ +++e+++va+ +     +++                    +++++  + +d  +l++++          ++dvv++c++
     CTQ29812.1   9 GFGRIGRNVVRALYESGRRAEITVVAINELA---DAAgiahllkydtshgrfawdVRQERERLFVGDDAIRLLHEPtiaalpwrelAVDVVLDCTG 101
                    99***************98777777776655...333556789999****9885522233333333444445554477888999988********* PP

                    -HHHHTTHHHHHHTTEEEE-S- CS
  NAD_binding_3  69 seavaelvlkaLkagkdvvtan 90 
                    +   +e+ ++ L+ag   v  +
     CTQ29812.1 102 VYGSREHGEAHLQAGAKKVLFS 123
                    **************98766655 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.6e-05      0.12       1      27 [.       3      31 ..       3     123 .. 0.76
   2 ?   -0.5   0.0      0.48   1.2e+03      41      76 ..     244     280 ..     224     301 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.6e-05
                EEEEEETTTSHHHHHHHHHHHHS...TTEE CS
      DapB_N  1 ikvavvGasGrmGkevvkaveea...edle 27
                i++a++G+ Gr+G++vv+a+ e+   ++++
  CTQ29812.1  3 IRIAINGF-GRIGRNVVRALYESgrrAEIT 31
                79******.**********99963223333 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.48
                 TTBHHHHSSSS--S-BEBSSHHHHHHH.-SEEEE-S- CS
      DapB_N  41 gkdagellglgklgvavtddleevlek.advliDFTt 76 
                 + d++  +++    ++v++ l+++++  +  ++D+T 
  CTQ29812.1 244 AIDLSVTVKKPVKACEVNQLLQKAAQGaFHGIVDYTE 280
                 5555555555566777777777777778899999995 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.6e-05     0.068       1      43 [.       3      45 ..       3     132 .. 0.71
   2 ?   -1.9   0.0       2.3   5.9e+03      20      45 ..     182     207 ..     173     243 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
                  EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHH CS
  GFO_IDH_MocA  1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeava 43
                  +r+ai G+G+ig++ +r+l es r++e++ +  ++ + a  +a
    CTQ29812.1  3 IRIAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGIA 45
                  69************************99987766666665554 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.3
                   HHTTTTEEEEEEECSSHHHHHHHHHH CS
  GFO_IDH_MocA  20 nesqrleevvalldpdaeraeavaes 45 
                   + + ++++v+ +++pd  r +a+++s
    CTQ29812.1 182 HSAMHDQQVIDAYHPDLRRTRAASQS 207
                   55566778888888888888876554 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.9e-05     0.049       1      31 [.       5      37 ..       5      54 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.9e-05
                EEEES-SHHHHHHHHHHHHTT..EEEEEEESSH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLsegg..kdvvvidkde 31
                i+i G+Gr+Gr++++ L e+g   +++v+  +e
  CTQ29812.1  5 IAINGFGRIGRNVVRALYESGrrAEITVVAINE 37
                7899***************55595599999886 PP

>> Asp23  Asp23 family, cell envelope-related function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.9   1.5e+04      63      73 ..     129     139 ..     129     143 .. 0.79
   2 ?   11.3   0.0   0.00014      0.35      26      86 ..     208     269 ..     201     284 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.9
       Asp23  63 dlyvvveYGvk 73 
                 dl+ +v YGv+
  CTQ29812.1 129 DLDATVVYGVN 139
                 78899999997 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00014
       Asp23  26 vvgmagklkdglaellgk.enltkgvkvevgeekqvavdlyvvveYGvkipevaenvqekVk 86 
                 ++ ++ kl++g+++++ + +++ + + v+v + +  a+dl+v+v+  vk  ev + +q++ +
  CTQ29812.1 208 IIPVDTKLAAGITRIFPQfNDRFEAIAVRVPTINVTAIDLSVTVKKPVKACEVNQLLQKAAQ 269
                 5667788999******999999*********9999******************999998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2599.63
//
Query:       CTQ29813.1  [L=273]
Description: DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-20   72.5   1.6    3.8e-20   71.6   1.6    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    9.1e-13   48.0   0.0    3.6e-12   46.1   0.0    1.8  1  LysR_substrate  LysR substrate binding domain
  ------ inclusion threshold ------
      0.061   13.1   1.5       0.13   12.1   1.5    1.6  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   1.6   6.4e-24   3.8e-20       2      60 .]       4      62 ..       3      62 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 6.4e-24
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                ++l++f++v ++++f rAAe+L+l+q+avs +i++LE++lgv Lf+R+ +++rLT aGe
  CTQ29813.1  4 ELLKTFLEVSRTRHFGRAAEALYLTQSAVSFRIRQLENQLGVNLFTRHRNNIRLTTAGE 62
                689********************************************8889*******7 PP

>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   6.1e-16   3.6e-12       4     198 ..      87     264 ..      84     268 .. 0.91

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 6.1e-16
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSECG CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvsl 98 
                      + +++iga+ +l +  l  +l  +  +  ++++e + ++ ++l+++l+e++lDl i+++ p  ++l ++ L++  l l+++      ++ ++  
      CTQ29813.1  87 RHNEFSIGASASLWECMLNSWLGTLYSAPYNLQFEARIAQRQSLVKQLHERQLDLLITTESPKMDELSSQLLGNFTLALYCASP--AKNRNEL-- 177
                     56789**************************************************************************99866..3467777.. PP

                     GGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCCC CS
  LysR_substrate  99 edLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgrel 193
                           + + le g  +++    + ++  +   + l+++s+e +++  +   G ++lp+ ++++    ++l   +++  +l+r+ly+++ +++  
      CTQ29813.1 178 ------NYLRLEWGPDFQQNEVGLIGSDDV---PLLTTSSAELIYQQLSRLNGCCWLPARWAKE---KHGLH-TVMDSATLSRPLYAIWLQNSDK 259
                     ......******9********999999999...7788*************************99...77888.556666*************988 PP

                     HHHHH CS
  LysR_substrate 194 spavr 198
                     ++++ 
      CTQ29813.1 260 QAQIH 264
                     77765 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.5   2.2e-05      0.13       4      45 ..       5      48 ..       3      60 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.2e-05
                HHHHHHHTT..T-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TT CS
      HTH_30  4 TLrayleng..gnisatAkaLhvHrnTlryRLrrieellgldld 45
                 L+++le +  +   ++A+aL++    ++ R+r++e  lg++l 
  CTQ29813.1  5 LLKTFLEVSrtRHFGRAAEALYLTQSAVSFRIRQLENQLGVNLF 48
                6777777664466789*************************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2003.58
//
Query:       CTQ29814.1  [L=112]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-40  136.9   0.1      2e-40  136.7   0.1    1.1  1  DUF413    Protein of unknown function, DUF


Domain annotation for each model (and alignments):
>> DUF413  Protein of unknown function, DUF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   0.1   1.1e-44     2e-40       1      89 [.      10      98 ..      10      99 .. 0.98

  Alignments for each domain:
  == domain 1  score: 136.7 bits;  conditional E-value: 1.1e-44
      DUF413  1 rFfDdknfprGfsrsGdFtikeaelLeqyGkalkaLeegelePeteeekqfvevvkgekaaetelekvWlkYlklirrkkrfhtlvgtk 89
                rFfD+kn+prGfsr+GdFtikea+lLe++G a+++Le g++eP+te+ekqfv+v++ge+++ te+e+vW+kY+ +i+r+krfhtl+g k
  CTQ29814.1 10 RFFDNKNYPRGFSRHGDFTIKEAQLLERHGYAFNELELGKREPVTEDEKQFVSVCRGEREPVTEAERVWIKYMARIKRPKRFHTLSGGK 98
                8************************************************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 837.23
//
Query:       CTQ29815.1  [L=506]
Description: putative bifunctional enzyme and transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-90  302.6   0.0    2.2e-90  301.6   0.0    1.5  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
    3.6e-44  149.5   0.0    6.3e-44  148.7   0.0    1.4  1  ChlI             Subunit ChlI of Mg-chelatase
    3.4e-29  101.3   6.8    7.4e-29  100.2   6.8    1.6  1  Mg_chelatase_C   Magnesium chelatase, subunit ChlI C-terminal
    1.9e-13   50.6   0.0    2.2e-12   47.1   0.0    2.4  2  AAA_5            AAA domain (dynein-related subfamily)
      6e-12   45.1   0.0    1.7e-09   37.1   0.0    2.2  2  MCM              MCM P-loop domain
    6.6e-06   25.9   0.0    9.3e-05   22.2   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
    0.00035   19.5   0.1      0.018   13.9   0.0    2.3  2  AAA_32           AAA domain
    0.00043   20.7   0.3     0.0022   18.4   0.3    2.2  1  AAA              ATPase family associated with various cellul
     0.0011   19.3   2.2     0.0019   18.6   0.2    2.5  2  AAA_16           AAA ATPase domain
     0.0015   18.7   1.3       0.11   12.6   0.0    2.6  2  AAA_33           AAA domain
     0.0018   18.0   0.3       0.17   11.7   0.0    2.9  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0031   17.8   0.2       0.01   16.1   0.0    2.0  2  AAA_22           AAA domain
     0.0048   16.5   0.7       0.18   11.4   0.0    2.4  2  AAA_25           AAA domain
      0.008   16.3   0.0       0.24   11.5   0.0    2.5  1  Sigma54_activ_2  Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.048   13.2   0.0    1.8  2  AAA_7            P-loop containing dynein motor region
      0.019   14.7   0.1      0.051   13.3   0.0    1.7  2  IstB_IS21        IstB-like ATP binding protein
      0.019   15.5   0.1       0.26   11.8   0.0    2.3  2  ABC_tran         ABC transporter
      0.029   14.1   0.0      0.053   13.2   0.0    1.3  1  AAA_24           AAA domain
      0.066   13.5   0.2       0.23   11.8   0.0    1.9  2  AAA_19           AAA domain


Domain annotation for each model (and alignments):
>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.6   0.0   2.3e-93   2.2e-90       1     200 [.     189     386 ..     189     391 .. 0.98

  Alignments for each domain:
  == domain 1  score: 301.6 bits;  conditional E-value: 2.3e-93
  Mg_chelatase   1 dlkdvkGqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkeeekllkrrpfraphhsaskaalvGggskp 97 
                   dl dv+Gq++ kralei aaGgHnlll+GppG+GKtmla+rlp+llppls++eale+a+i+s+++ +++++ +++rpfraphhsas aa+vGggs+p
    CTQ29815.1 189 DLLDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQEALESAAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIP 285
                   899********************************************************************************************** PP

  Mg_chelatase  98 kpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpcgklkdkekectcsekeierYlsklsgplldRid 194
                    pGeislahnGvLfLDElpef+r+vl++LReP+e+g+++isr++ak+++parfql+aamNp+p+g+++ k++++  s++++ rYl +lsgp+ldR+d
    CTQ29815.1 286 VPGEISLAHNGVLFLDELPEFERRVLDALREPIESGKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRA--SPEQTLRYLGRLSGPFLDRFD 380
                   ********************************************************************887765..7******************** PP

  Mg_chelatase 195 lqvevk 200
                   l++e++
    CTQ29815.1 381 LSLEIP 386
                   **9996 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.7   0.0   6.7e-47   6.3e-44       1     121 []      21     142 ..      21     142 .. 0.96

  Alignments for each domain:
  == domain 1  score: 148.7 bits;  conditional E-value: 6.7e-47
        ChlI   1 vevdvskglpkftivGlpdtavkeskervrsalknsgfefpakkitvnLaPadlkkeGsafDLpiAigilaaleqieae..eetlflGeLsldGslrpv 97 
                 vev++s+glp++t+vGlp+t+vke+++rvrsal nsg+ fpakkit+nLaPadl+keG ++DLpiA+++l a+eq +++  +++ f+GeL+l+G lr v
  CTQ29815.1  21 VEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGRYDLPIALALLVASEQLNTTrlNQYEFVGELALTGGLRGV 119
                 8*********************************************************************999887666569***************** PP

        ChlI  98 kgvlpialaakkegikkvivpken 121
                  g++p a++a k+g ++++v+ +n
  CTQ29815.1 120 PGAIPSAMEAIKAG-RRIVVSSDN 142
                 **************.899998876 PP

>> Mg_chelatase_C  Magnesium chelatase, subunit ChlI C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   6.8   7.9e-32   7.4e-29       2      93 .]     401     492 ..     400     492 .. 0.99

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 7.9e-32
  Mg_chelatase_C   2 esSaevrerVaaAreiqkeRfakenaelsgeelrevceldeeaeelleeaierlglsaRaydrilkvArTiADLegseeieeehlaeAlqyR 93 
                     esSa+vr+rV+aAre+q  R++k na+l+++e+++ c+l++e++ +le+ +++lgls Ra++r+lkvArTiADL++ eeie+ hl+eAl+yR
      CTQ29815.1 401 ESSATVRQRVLAARERQMLRQNKLNAHLENREMKNCCRLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEVEEIERCHLQEALSYR 492
                     9********************999*******************************************************************9 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   2.4e-15   2.2e-12       1     126 [.     212     355 ..     212     364 .. 0.78
   2 ?    0.4   0.1      0.63     6e+02      30      79 ..     422     486 ..     397     491 .. 0.66

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 2.4e-15
                 EEEEE--SSSSHHHHHHHGGGGB....S--EEEEE--TT--HHHHH--B--.........--------......................G-SEEEEES CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal....nreveyvqltrdtteedlkgrreikngttslvdsplvraar......................egeilvlDE 73 
                 ++lL+GppGtgK++la rl  +l    n        ++ ++++ ++  +++   +t++++ p+                           +  +l+lDE
  CTQ29815.1 212 NLLLIGPPGTGKTMLASRLPGLLpplsN--------QEALESAAIQSLVNLHTAKTRWRQRPFRAPHHsaslaamvgggsipvpgeislaHNGVLFLDE 302
                 69********************965552........44445555555555555555555555553222555555568********************** PP

                 GGG--HHHHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS--......- CS
       AAA_5  74 veraesevlnsLlslleerrllleeggelvkaknddllerfrviatanpld.....rs 126
                 + + e+ vl++L  ++e  ++++  ++  ++ ++      f++ia++np +     ++
  CTQ29815.1 303 LPEFERRVLDALREPIESGKIHISRSRAKIDYPAR-----FQLIAAMNPSPtghyqGK 355
                 ******************************99996.....**********96664444 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.63
                 EE--TT--HHHHH--B--.........--------..............G-SEEEEESGGG--.H CS
       AAA_5  30 vqltrdtteedlkgrreikngttslvdsplvraar..............egeilvlDEverae.s 79 
                   l++ ++ +++k   +++ +++++ ++ l++ +                ++++ ++E+er++ +
  CTQ29815.1 422 NKLNAHLENREMKNCCRLRREDAVWLEQTLTQLGLsirawqrllkvartIADLAEVEEIERCHlQ 486
                 45666666677777777777777777777775555666666777776667777777777777744 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0067       6.3      40      77 ..     193     230 ..     184     264 .. 0.78
   2 !   37.1   0.0   1.8e-12   1.7e-09     114     201 ..     287     382 ..     273     386 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0067
                 HH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHH CS
         MCM  40 lfggvkkkledktklrgdinvllvgdpgtaKsqlLkyv 77 
                 ++g ++ k+  ++   g  n+ll+g pgt+K+ l  ++
  CTQ29815.1 193 VIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRL 230
                 5566665555567788999*************987665 PP

  == domain 2  score: 37.1 bits;  conditional E-value: 1.8e-12
                 ETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--S.SSSCCTTS.......-HHHHSSSSHHHHHHSSEE CS
         MCM 114 aGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpk.agrydkkk.......svaeninlsaalLsrFDli 201
                  G + la++Gv+ +De+ + +++  +al E +E+ +i+i+++  ++  +ar  ++aA+np+ +g+y+ k+       ++    +ls + L+rFDl 
  CTQ29815.1 287 PGEISLAHNGVLFLDELPEFERRVLDALREPIESGKIHISRSRAKIDYPARFQLIAAMNPSpTGHYQGKHnraspeqTLRYLGRLSGPFLDRFDLS 382
                 68899*******************************************************988888765411101003344447999*******96 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   9.8e-08   9.3e-05      13     145 ..     201     348 ..     194     359 .. 0.78
   2 ?   -3.3   0.0       6.5   6.1e+03     126     147 ..     399     420 ..     398     430 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 9.8e-08
                      HHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH..........HSTTTTS-EEEEETTTS..-TTCHHHHHHEBSSSSSTTTSS-BE.HHHHHTT CS
  Sigma54_activat  13 eqikkvaktdlsvlitGesGtGKellaraihe..........askrkekpfvavncaai..peelleseLFGhekGaFtGAekekk.Glfekad 93 
                      + ++ va+   ++l+ G  GtGK++la+ +             ++ + +++v++  a++   ++ +++     +  a  G  +    G ++ a+
       CTQ29815.1 201 RALEIVAAGGHNLLLIGPPGTGKTMLASRLPGllpplsnqeaLESAAIQSLVNLHTAKTrwRQRPFRAPHHSASLAAMVGGGSIPVpGEISLAH 294
                      56677888889******************9665666555544455566789999999765578889999999999999988777666******* PP

                      TSEEEEETGGGS-HHHHHHHHHHHHHSEEESBTSSS..EEE--EEEEEEESS-H CS
  Sigma54_activat  94 gGtlfLDeigelplelQekLlrvlqegevervGssk..eikvdvriiaatnedl 145
                      +G+lfLDe+ e++ ++   L + +++g+++   s++    ++ +++iaa n ++
       CTQ29815.1 295 NGVLFLDELPEFERRVLDALREPIESGKIHISRSRAkiDYPARFQLIAAMNPSP 348
                      *************************99987555544115677888899988765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.5
                      TSSSEEE--EEEEEEESS-HHH CS
  Sigma54_activat 126 Gsskeikvdvriiaatnedlee 147
                      G++++ +v  r++aa ++++ +
       CTQ29815.1 399 GEESSATVRQRVLAARERQMLR 420
                      7788889999999999877543 PP

>> AAA_32  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.9e-05     0.018       3      49 ..     186     229 ..     184     233 .. 0.91
   2 ?    3.1   0.2     0.034        32     462     511 ..     443     492 ..     418     494 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.9e-05
      AAA_32   3 elepleeiigqeRAvealefglkikkkgYNifvlGesgtGrttlvkr 49 
                 ++e+l ++igq+++ +ale+   + + g+N+ ++G++gtG+t+l++r
  CTQ29815.1 186 RYEDLLDVIGQQQGKRALEI---VAAGGHNLLLIGPPGTGKTMLASR 229
                 6789999************8...7889****************9987 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.034
      AAA_32 462 yssrlaedqeklstrfseiadllrEAdywakkegaevveaehVekAleek 511
                 +++ l +  ++l ++++  + ll+ A ++a+ ++ e +e+ h+++Al+ +
  CTQ29815.1 443 DAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEVEEIERCHLQEALSYR 492
                 5667777778999999******************************9865 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.3   2.4e-06    0.0022       1      22 [.     213     234 ..     213     346 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.4e-06
                 EEEESSTTSSHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel 22 
                 +ll+GppGtGKT+la+ +   l
  CTQ29815.1 213 LLLIGPPGTGKTMLASRLPGLL 234
                 69*************9876664 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2     2e-06    0.0019      13      45 ..     200     231 ..     179     322 .. 0.84
   2 ?   -1.2   0.1       2.4   2.3e+03      48      99 ..     439     485 ..     410     505 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2e-06
      AAA_16  13 lsalervrsgrpelvllsGesGvGKsslvrell 45 
                 ++ale v++g+ +++ll+G++G+GK+ l+ +l+
  CTQ29815.1 200 KRALEIVAAGG-HNLLLIGPPGTGKTMLASRLP 231
                 56778777776.9****************9987 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.4
      AAA_16  48 lekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawre 99 
                 l+++++++l+++ +ql  +++  a+ ++l   ++ r ++d ae  e e+ + 
  CTQ29815.1 439 LRREDAVWLEQTLTQL--GLSIRAWQRLL---KVARTIADLAEVEEIERCHL 485
                 4444566666666666..22222222222...33333333333334443333 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00012      0.11       3      21 ..     214     232 ..     213     278 .. 0.78
   2 ?    3.5   1.1     0.077        73      32      95 ..     405     471 ..     401     497 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00012
      AAA_33   3 llvGlpGsGKstlaerllk 21 
                 ll+G+pG+GK+ la rl  
  CTQ29815.1 214 LLIGPPGTGKTMLASRLPG 232
                 79*************9954 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.077
      AAA_33  32 tlrrrlfgtdqqsktdytr.vldrlyqilnelarkalsagrnvildatnls....rrerarflklarrl 95 
                 t+r+r+ +  +++  ++++  ++  ++ +++ +  +l+++ +v l +t+++     r+++r+lk+ar +
  CTQ29815.1 405 TVRQRVLAARERQMLRQNKlNAHLENREMKNCC--RLRREDAVWLEQTLTQlglsIRAWQRLLKVARTI 471
                 677777774444444455515555777887777..699999999****88877757999*****99955 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00018      0.17       4      51 ..     188     228 ..     185     233 .. 0.80
   2 ?    3.1   0.0     0.078        73      81     115 ..     291     325 ..     288     344 .. 0.85
   3 ?   -2.0   0.0       2.8   2.7e+03     142     157 ..     368     383 ..     364     385 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
      RuvB_N   4 ksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlak 51 
                 + l + igq++ k  l+i+ +  +        +ll+GpPG Gkt la+
  CTQ29815.1 188 EDLLDVIGQQQGKRALEIVAAGGH-------NLLLIGPPGTGKTMLAS 228
                 567788999999999998765543.......489***********996 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.078
      RuvB_N  81 nleekdvlfideihrlsraveevlysamedfrldi 115
                 +l ++ vlf+de+  ++r v + l   +e  ++ i
  CTQ29815.1 291 SLAHNGVLFLDELPEFERRVLDALREPIESGKIHI 325
                 688999**************999999999888877 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.8
      RuvB_N 142 agllssPlrdrfgiva 157
                  g ls P+ drf ++ 
  CTQ29815.1 368 LGRLSGPFLDRFDLSL 383
                 5899********9865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.1e-05      0.01       7      30 ..     212     235 ..     207     264 .. 0.79
   2 ?   -2.3   0.1       5.2   4.9e+03      78     102 ..     456     482 ..     399     505 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqld 30 
                  l+++G++GtGKT+l+ rl   l+
  CTQ29815.1 212 NLLLIGPPGTGKTMLASRLPGLLP 235
                 689**************9977665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.2
      AAA_22  78 ll.ealeqalrarav.ielliiDEaqh 102
                 l  +a ++ l+ +++   l  ++E+++
  CTQ29815.1 456 LSiRAWQRLLKVARTiADLAEVEEIER 482
                 333444444444444444555555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00019      0.18      32      52 ..     209     229 ..     185     231 .. 0.86
   2 ?    2.8   0.5     0.078        73      78     139 ..     398     453 ..     397     473 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
      AAA_25  32 agelallaGapgtGKttlald 52 
                  g+  ll+G+pgtGKt+la+ 
  CTQ29815.1 209 GGHNLLLIGPPGTGKTMLASR 229
                 566789************986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.078
      AAA_25  78 saEdsedelrrRlravgealrddarllvldlagv.eslpLfakdrggtlltadvdaleaaiee 139
                 ++E+s +++r+R+ a++e + ++++ l  +l+++ ++       +   l+ +d  +le+++++
  CTQ29815.1 398 QGEESSATVRQRVLAARERQMLRQNKLNAHLENReMK-------NCCRLRREDAVWLEQTLTQ 453
                 6899*9***********88766666666666665333.......3334455666677777766 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00025      0.24      11      42 ..     200     231 ..     196     338 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00025
                      HHHHHHHHT-SS-EEEEEETT--HHHHHHCC- CS
  Sigma54_activ_2  11 kerLeqaaqsklpvfltGekGsgkelvArlLh 42 
                      k+ Le +a+   +++l+G++G+gk++ A  L 
       CTQ29815.1 200 KRALEIVAAGGHNLLLIGPPGTGKTMLASRLP 231
                      688999********************998764 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.1e-05     0.048      26      53 ..     203     230 ..     194     248 .. 0.86
   2 ?   -1.9   0.0       2.2     2e+03     141     161 ..     330     350 ..     308     353 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.1e-05
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdl 53 
                 le + + ++++ll+Gp GtGKt+++++l
  CTQ29815.1 203 LEIVAAGGHNLLLIGPPGTGKTMLASRL 230
                 67788899***************99875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.2
       AAA_7 141 lefkeikdvqlvaamgppggg 161
                  ++ +    ql+aam+p   g
  CTQ29815.1 330 AKIDYPARFQLIAAMNPSPTG 350
                 4555566789******98666 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.4e-05     0.051      47      65 ..     210     228 ..     188     232 .. 0.88
   2 ?   -3.6   0.0       8.2   7.7e+03      62      88 ..     484     499 ..     475     503 .. 0.51

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.4e-05
   IstB_IS21  47 kenivllGpsGvGKshlai 65 
                  +n++l+Gp+G+GK+ la 
  CTQ29815.1 210 GHNLLLIGPPGTGKTMLAS 228
                 579**************97 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 8.2
   IstB_IS21  62 hlaialgveavraglsvlfvrvedLve 88 
                 hl  al+           +  ++++++
  CTQ29815.1 484 HLQEALS-----------YRAIDRMLN 499
                 3333333...........334444444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00027      0.26      11      52 ..     210     256 ..     203     302 .. 0.84
   2 ?    0.8   0.1      0.67   6.3e+02      52      96 ..     407     458 ..     392     481 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00027
                 TSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.....B CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x RF
    ABC_tran  11 gekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.....q 52 
                 g+ + ++G+ G+GK+ L++ l gll p + +  l+++ +++     +
  CTQ29815.1 210 GHNLLLIGPPGTGKTMLASRLPGLLPPLSNQEALESAAIQSlvnlhT 256
                 78899*********************988777788888777544442 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.67
                 B-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxx RF
    ABC_tran  52 qeleslrkeigvlpqepqlfpeltvren........esdeeiekalsklglke 96 
                 +++  + +e ++l q+ +l+ +l++re         e+ +++e+ l++lgl+ 
  CTQ29815.1 407 RQRVLAARERQMLRQN-KLNAHLENREMknccrlrrEDAVWLEQTLTQLGLSI 458
                 4555666777888888.888888888778899999888888999999998865 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.6e-05     0.053       4      24 ..     212     231 ..     210     240 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.6e-05
      AAA_24   4 kiliyGpsgiGKTtlakelgp 24 
                 ++l++Gp+g+GKT+la++l p
  CTQ29815.1 212 NLLLIGPPGTGKTMLASRL-P 231
                 689**************99.5 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00024      0.23       4      26 ..     205     226 ..     200     246 .. 0.86
   2 ?   -1.5   0.1       3.1   2.9e+03      69      84 ..     468     483 ..     407     505 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00024
      AAA_19   4 avealkekvllvtaGpGtGKTrv 26 
                 +v a+  ++ll++++pGtGKT +
  CTQ29815.1 205 IV-AAGGHNLLLIGPPGTGKTML 226
                 55.888999************86 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.1
      AAA_19  69 atTiHrlalldfddll 84 
                 a+Ti  la+++  ++ 
  CTQ29815.1 468 ARTIADLAEVEEIERC 483
                 6666666554333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3818.03
//
Query:       CTQ29816.1  [L=548]
Description: Acetolactate synthase isozyme 2 large subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-57  192.6   5.0    1.3e-56  190.9   0.2    3.4  3  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    4.9e-51  172.5   0.3    2.7e-49  166.9   0.0    2.9  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    3.2e-43  146.7   0.1    7.8e-43  145.5   0.1    1.6  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
     0.0027   17.5   0.3     0.0052   16.6   0.3    1.4  1  POR_N         Pyruvate flavodoxin/ferredoxin oxidoreductase, 
  ------ inclusion threshold ------
       0.15   10.8   0.1       0.33    9.7   0.1    1.6  1  XFP_N         XFP N-terminal domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.9   0.2   3.7e-60   1.3e-56       1     169 [.       1     167 [.       1     170 [. 0.98
   2 ?   -1.4   0.2      0.42   1.5e+03      62      83 ..     195     216 ..     183     225 .. 0.70
   3 ?    2.1   0.0     0.037   1.3e+02     138     164 ..     502     527 ..     380     530 .. 0.77

  Alignments for each domain:
  == domain 1  score: 190.9 bits;  conditional E-value: 3.7e-60
                   EEHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEE CS
  TPP_enzyme_N   1 mtvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvls 97 
                   m++a+ +v+aL+ +gv++vfg+pG+ i+p++dal +  g++++l+rhEqgaa+aA gyaratgk gv+++tsgpGatn++t+la+A +d+iP+++++
    CTQ29816.1   1 MNGAQWVVHALRTQGVDTVFGYPGGAIMPVYDALYDG-GVEHLLCRHEQGAAMAAIGYARATGKTGVCIATSGPGATNLITGLADALLDSIPIVAIT 96 
                   89***********************************.7********************************************************** PP

                   EE--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N  98 gdrptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevd 169
                   g++++  +g++++q e+d l+l   +tk+++ v+s +elp+++++A+++a sgrpgPv++++pkd+++++ d
    CTQ29816.1  97 GQVAAPFIGTDAFQ-EVDVLGLSLACTKHSFLVQSLDELPRVIAEAFQVANSGRPGPVLVDIPKDIQMAQGD 167
                   **************.*******99********************************************9876 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.42
                   HTS-EEEEE-CHHHHHHCHHHH CS
  TPP_enzyme_N  62 tgkpgvvlvtsgpGatnaltal 83 
                   + +  +++v  g+G++ a++al
    CTQ29816.1 195 QSQQPMLYVGGGVGMAQAVPAL 216
                   3555677788888998888887 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.037
                   HHHHHHHHHHHSSS--EEEEEEEHHHC CS
  TPP_enzyme_N 138 ealrrAirtalsgrpgPvylelpkdvl 164
                    +++ A++t+  + +gP +l ++ d l
    CTQ29816.1 502 DQVEAALDTM-LSSQGPYLLHVSIDEL 527
                   3467777777.7777888888888876 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.032   1.1e+02     108     153 .]     109     157 ..      46     157 .. 0.75
   2 !  166.9   0.0   7.6e-53   2.7e-49       1     153 []     374     522 ..     374     522 .. 0.98

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.032
                   S----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHH.....CSSSEEEEEE CS
  TPP_enzyme_C 108 lkpvdfaklaealGakgarvekadveeleealkeal.....ekkgpaliev 153
                   +++vd+  l  a+  + + v++   +el ++++ea+      + gp+l+++
    CTQ29816.1 109 FQEVDVLGLSLACTKHSFLVQSL--DELPRVIAEAFqvansGRPGPVLVDI 157
                   66777777777775556666666..89999999998888887888888875 PP

  == domain 2  score: 166.9 bits;  conditional E-value: 7.6e-53
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   d+G++++w a+++ ++rp +++ts+glgtmG+glpaA+Ga++a+p+ +v++i+GDG+f+m++qel t+ r++lp+++v+l+N+ +gm++++q+ f++
    CTQ29816.1 374 DVGQHQMWSAQHMTYTRPENFITSSGLGTMGFGLPAAVGAQVARPNDTVICISGDGSFMMNVQELGTVKRKQLPLKIVLLDNQRLGMVRQWQQLFFQ 470
                   89*******************************************99************************************************** PP

                   CTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  98 krksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                   +r+s+++   ++++df  la a+G++g  ++++  +++e+al+++l+++gp l++v
    CTQ29816.1 471 ERYSETT--LTDNPDFLTLASAFGIPGQHITRK--DQVEAALDTMLSSQGPYLLHV 522
                   *****99..69999**************999**..******************997 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.5   0.1   2.2e-46   7.8e-43       1     137 []     186     321 ..     186     321 .. 0.98
   2 ?   -3.1   0.0       1.7     6e+03      73      91 ..     414     432 ..     399     457 .. 0.57

  Alignments for each domain:
  == domain 1  score: 145.5 bits;  conditional E-value: 2.2e-46
                   HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   +++a+++l+++++p+++vGggv  ++a  +lre++  +++P + tl+g gv++ d p+ylgmlg+hg+kaan a++e+Dl++a+Garfdd r+tg+ 
    CTQ29816.1 186 VAQALQMLAQSQQPMLYVGGGVGMAQAVPALREFLAVTRMPATCTLKGLGVVDADYPYYLGMLGMHGTKAANLAVQECDLLIAVGARFDD-RVTGKL 281
                   689***************************************************************************************.****** PP

                   TTTTTT-EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  98 pefapeakiihididpaeigknyqvdlaivgdvketleaL 137
                   ++fap+ak+ih didpae++k +q+++++ gd++  l aL
    CTQ29816.1 282 NTFAPHAKVIHMDIDPAELNKLRQAHIGLTGDLNCLLPAL 321
                   *********************************9888776 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
                   HHHHH-SEEEEES-SSSTC CS
  TPP_enzyme_M  73 ealeeaDlvlalGarfddi 91 
                   ++++  D+v+++  + +++
    CTQ29816.1 414 QVARPNDTVICISGDGSFM 432
                   4445577777776554443 PP

>> POR_N  Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   1.4e-06    0.0052      39     144 ..      40     147 ..      10     157 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.4e-06
                 EEEE-SSHHHHHHHHHH.HHCTT-EE.EEEEECCHHHHCCCCHHHHHHTT--EEEEEEEEE-STTBEEEEE--TTCHHHHS---EEEE-SSHHHHHHHH CS
       POR_N  39 evvqmesEigaisaviG.AaaaGara.aTaTSgqGllLmienlglaageelPvvivvvaRalpstglsirtdqsDlmaardtglivlasenvqeafdla 135
                 e +    E ga++a+iG A a+G  +   aTSg+G    i  l  a  + +P+v +  + a p  g+  +++   l   +      + +++  e  + +
  CTQ29816.1  40 EHLLCRHEQGAAMAAIGyARATGKTGvCIATSGPGATNLITGLADALLDSIPIVAITGQVAAPFIGTDAFQEVDVLGLSLACTKHSFLVQSLDELPRVI 138
                 566677899999999996778887752579*****************************9999999999888766667778888888899999999999 PP

                 HHHHHHHHH CS
       POR_N 136 lvAfnlAek 144
                 ++Af++A +
  CTQ29816.1 139 AEAFQVANS 147
                 999999875 PP

>> XFP_N  XFP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   9.2e-05      0.33     140     169 ..     401     430 ..     383     440 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 9.2e-05
       XFP_N 140 GelGyalshayGavldnPdlivacvvGdGe 169
                 G +G+ l  a+Ga + +P+  v+c+ GdG 
  CTQ29816.1 401 GTMGFGLPAAVGAQVARPNDTVICISGDGS 430
                 889*************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4220.55
//
Query:       CTQ29817.1  [L=85]
Description: acetolactate synthase II, small subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-27   93.7   0.0    5.5e-27   93.4   0.0    1.1  1  ACT_5     ACT domain
    0.00057   20.4   0.0    0.00068   20.2   0.0    1.1  1  ACT_4     ACT domain


Domain annotation for each model (and alignments):
>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.0   6.2e-31   5.5e-27       2      62 .]      13      73 ..      12      73 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.4 bits;  conditional E-value: 6.2e-31
       ACT_5  2 apgvLeRvlrvvrrrgFevkslnmsttedggtvrieltVesersvelLsnQleKLidVlkV 62
                 p++LeRvlrvvr+rgF+++++nm+t  d+++++ieltV+s r+velL +Ql+KL+dV++V
  CTQ29817.1 13 NPETLERVLRVVRHRGFHICAMNMETAPDAQNINIELTVASPRPVELLFSQLSKLVDVACV 73
                69********************************************************987 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   7.6e-08   0.00068       9      78 ..       6      73 ..       2      74 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 7.6e-08
       ACT_4  9 leveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLsrviakLraipgVisV 78
                + ++a+ ++  L ++++v+ + + +i ++n++t   d   +i+i++ V + + ++ +  +L ++ +V  V
  CTQ29817.1  6 VALQARFNPETLERVLRVVRHRGFHICAMNMETAP-D-AQNINIELTVASPRPVELLFSQLSKLVDVACV 73
                55677778999**********************64.6.99************************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 717.98
//
Query:       CTQ29818.1  [L=309]
Description: branched-chain amino-acid aminotransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-50  170.2   0.0    6.8e-50  170.0   0.0    1.0  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.0   0.0   3.8e-54   6.8e-50       2     223 .]      36     268 ..      35     268 .. 0.95

  Alignments for each domain:
  == domain 1  score: 170.0 bits;  conditional E-value: 3.8e-54
  Aminotran_4   2 lfEtmrvy....ngeiffldeHleRLrksaellglelpfdeeelrkileelleannsengrlrllvsrgggglg.aatsepsvavyvsalppgpesek 94 
                  +fE++r y       +f+  eH++RL+ sa++   +++ + +el+++++e+++ nn   +++r+lv+ g+ g+g ++ + ++ +v+++a+p+g++  +
   CTQ29818.1  36 VFEGIRCYdshkGPVVFRHREHMQRLHDSAKIYRFPVSQSVDELMEACREVIRTNNLTSAYIRPLVFVGDVGMGvNPPPGYNTDVIIAAFPWGAYLGA 133
                  9*****996654444499***************99999999********************************************************* PP

  Aminotran_4  95 e.....lplvtssdvrrdapsplpgaKtln.yldnvlarreakergadevllvdedgnvtEgstsNvfivkggelitPplssgiLpGitrrallelak 186
                  e     + +++ss+ r+ ++   + aK    yl ++l+  ea+++g++e + +d +g+++Eg+  N+f vk+g l+tPp+ s+ LpGitr+a+++lak
   CTQ29818.1 134 EaleqgIDAMVSSWNRAAPNTIPTAAKAGGnYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAK 231
                  ******9999999888888888888888766******************************************************************* PP

  Aminotran_4 187 algleveereitlkdleeadeafltntlrgvlpvrsi 223
                  +lg+ev+e+ ++ + l  ade+f+++t+++++pvrs+
   CTQ29818.1 232 DLGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSV 268
                  ***********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2614.87
//
Query:       CTQ29819.1  [L=616]
Description: dihydroxy-acid dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.7e-220  733.0   2.7   1.9e-220  732.9   2.7    1.0  1  ILVD_EDD       Dehydratase family
  ------ inclusion threshold ------
        1.8    8.8   5.8         20    5.4   0.8    3.3  4  Ribosomal_S27  Ribosomal protein S27a


Domain annotation for each model (and alignments):
>> ILVD_EDD  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  732.9   2.7  2.2e-224  1.9e-220       1     517 []      34     607 ..      34     607 .. 0.96

  Alignments for each domain:
  == domain 1  score: 732.9 bits;  conditional E-value: 2.2e-224
    ILVD_EDD   1 kpiigiansyselvpchvhlkelaeavkegveeaggvpaefntigvsDgiamgeegmrysLpsReliadsvetmleaqllDalvlisgCDKivPgllma 99 
                 kpii+++ns++++vp+hvhl++l++ v+e++e+aggv+ efnti+v+Dgiamg+ gm ysLpsReliadsve+m++a+++Da+v+is+CDKi+Pg+lma
  CTQ29819.1  34 KPIIAVVNSFTQFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMA 132
                 8************************************************************************************************** PP

    ILVD_EDD 100 aarlniPaifvsgGpmeagkkk......kldlssvfeavgalaagkiseeeleeleeaacpgaGsCsgmgTAntmaclaealGlslpgsasipatsaer 192
                  +rlniP+ifvsgGpmeagk+k      kl   + ++a+ + a+ k+s+e+ +++e++acp++GsCsgm+TAn+m+cl+ealGls pg++s+ at+a+r
  CTQ29819.1 133 SLRLNIPVIFVSGGPMEAGKTKlsdkiiKL---DLVDAMIQGADPKVSDEQSNQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADR 228
                 ******************997777633333...567*************************************************************** PP

    ILVD_EDD 193 kelaeeagkrivelv.....ekd...lkprdiltkeafeNAivvllalGGStNavlHllAiAreagveltlddfdelsrkvpllaklkP.sgkydmedl 282
                 kel+ +agkrivel+     + d     pr+i++k+afeNA+++++a+GGStN+vlHllA+A+ea++++t++d+d+lsrkvp l+k++P ++ky+med+
  CTQ29819.1 229 KELFLNAGKRIVELTkryyeQ-DdasALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPsTQKYHMEDV 326
                 **************9888852.234477*************************************************************999******* PP

    ILVD_EDD 283 hraGGvpavlkeLlkagllhgdvltvtgktlaenleeaev.....................................keqdvirplekplskegglavL 344
                 hraGGv  +l eL++agll+++v+ v g tl ++le+ +v                                     +++ +ir+le+++sk+gglavL
  CTQ29819.1 327 HRAGGVLGILGELDRAGLLNREVKNVLGLTLPQTLEQYDVmvtqddavkkmfragpagirttqafsqdcrwdtldddRAEGCIRSLEHAYSKDGGLAVL 425
                 ***********************************9966679999*******************************99********************* PP

    ILVD_EDD 345 kGnLapeGavvKtsaveeellkfegpArvfdseeeaveailkgkikagdvvviryeGPkGgpGmpEmlkptsallgkglgkkvalitDGRfSGaskglv 443
                 +Gn a++G++vKt++v++++lkf+gpA+v++s+++aveail gk+ +gdvvviryeGPkGgpGm+Eml+pts l+++glgk +alitDGRfSG+++gl+
  CTQ29819.1 426 YGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVEGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLS 524
                 *************************************************************************************************** PP

    ILVD_EDD 444 ighvsPEAaegGpialvedGDiieidiekrtlelevseeelaaRra........awkp.ekkvktrgllakyaklvssaseGA 517
                 ighvsPEAa+gG+ial+edGD+i idi++r+++l++s++e+aaRr+        aw+p +++ + + +l++ya+l++sa++GA
  CTQ29819.1 525 IGHVSPEAASGGNIALIEDGDMIAIDIPNRSIQLQLSDAEIAARREaqeargdqAWTPkNRQRQVSFALRAYASLATSADKGA 607
                 *********************************************7689999999999544445599***************8 PP

>> Ribosomal_S27  Ribosomal protein S27a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.49   4.4e+03      20      32 ..     118     133 ..     116     134 .. 0.76
   2 ?    5.4   0.8    0.0023        20       6      32 ..     175     202 ..     175     206 .. 0.76
   3 ?    4.0   0.0    0.0062        56      25      37 ..     217     229 ..     214     230 .. 0.90
   4 ?   -3.1   0.0         1   9.3e+03       9      27 ..     472     488 ..     469     489 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.49
                    -SS-S...-TTSBEEE CS
  Ribosomal_S27  20 CpreC...GaGvfMAe 32 
                    C ++C    +G+ MA+
     CTQ29819.1 118 CISNCdkiTPGMLMAS 133
                    6666666699****96 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0023
                    CESSSSSEEESS-B-SS-S..-TTSBEEE CS
  Ribosomal_S27   6 kvddsgkverlrkeCpreC..GaGvfMAe 32 
                    kv d+++ +  r  Cp+ C  + G+f A+
     CTQ29819.1 175 KVSDEQSNQVERSACPT-CgsCSGMFTAN 202
                    67777888999******.94446888776 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0062
                    -TTSBEEECTTEE CS
  Ribosomal_S27  25 GaGvfMAehkdRk 37 
                    G+G  +A h+dRk
     CTQ29819.1 217 GNGSLLATHADRK 229
                    89**********7 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 1
                    SSSSEEESS-B-SS-S-TT CS
  Ribosomal_S27   9 dsgkverlrkeCpreCGaG 27 
                    + g v   r e p+  G+G
     CTQ29819.1 472 E-GDVVVIRYEGPK-GGPG 488
                    5.899999*99999.8998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.38
# Mc/sec: 4907.86
//
Query:       CTQ29820.1  [L=514]
Description: threonine deaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-79  265.2   2.1    1.1e-78  264.6   2.1    1.3  1  PALP            Pyridoxal-phosphate dependent enzyme
      3e-59  196.8   0.0    2.4e-28   97.7   0.0    2.4  2  Thr_dehydrat_C  C-terminal regulatory domain of Threonine deh


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.6   2.1   1.2e-82   1.1e-78       4     294 .]      28     316 ..      25     316 .. 0.98

  Alignments for each domain:
  == domain 1  score: 264.6 bits;  conditional E-value: 1.2e-82
                 CSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT- CS
        PALP   4 gigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGa 102
                 ++ +TPl + ++ls +l   +++K+E+ +p  SfK+Rga+ ++++l+ +++  +v++as+GNh++++A+ a++lG+k+ iv+p  +   kv++ r +G 
  CTQ29820.1  28 AVQKTPLQKMDKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMSSLTAEQKSHGVITASAGNHAQGVAFSASRLGVKALIVMPVATADIKVDAVRGFGG 126
                 6789**************99*************************888889************************************************ PP

                 EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGTTC CS
        PALP 103 evvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdalars 201
                 ev + g ++dea+a+a ela++ +g+++v++fd+p vi+g+gt++lE+  q++  +d v+vpvGgGgl+aG+a  +k+  p+++vi+ve+e s++l ++
  CTQ29820.1 127 EVLLHGANFDEAKARAIELAQQ-QGFTWVPPFDHPMVIAGQGTLALEL-LQQDAHIDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAA 223
                 **********************.*************************.58889********************************************* PP

                 CS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH.HHHHHHCCTTCEEEEEEE-B CS
        PALP 202 lragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal.klreagelkegdrvvviltg 294
                 l+ag++v++p    +a+g+av++ ++++f+l+++++d+i+tv+++++++am+ l ++ + v+eps+a ala++ k   + +++++ r  +il+g
  CTQ29820.1 224 LDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMkKYIAQHNIRGE-RLAHILSG 316
                 ************************************************************************************9.****9998 PP

>> Thr_dehydrat_C  C-terminal regulatory domain of Threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   2.7e-32   2.4e-28       1      91 []     329     419 ..     329     419 .. 0.97
   2 !   96.8   0.0   5.2e-32   4.6e-28       2      91 .]     425     512 ..     424     512 .. 0.95

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 2.7e-32
                     HHHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C   1 eraevgegleallavefpeqpGaLkkFlellggrndiTlfeYrkagekngkvLvgvevsqaee.ldelierleklgykvedlsknellkehl 91 
                     er+e+ge++eallav++pe++G+++kF++llggr  +T+f+Yr+a++k ++++vgv++s+  e ++e+ + l++ gy+v+dls++e++k h+
      CTQ29820.1 329 ERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRS-VTEFNYRFADAKDACIFVGVRLSRGLEeRKEILQLLNDGGYSVVDLSDDEMAKLHV 419
                     8**********************************.***********************987669************************997 PP

  == domain 2  score: 96.8 bits;  conditional E-value: 5.2e-32
                     HHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C   2 raevgegleallavefpeqpGaLkkFlellggrndiTlfeYrkagekngkvLvgvevsqaeeldelierleklgykvedlsknellkehl 91 
                     ++ ++  +e+l+++efpe+pGaL+kFl++lg++++i+lf+Yr++g+++g+vL+++e+ + +e  ++++rl++lgy+++d+++n +++ +l
      CTQ29820.1 425 GRPSKALQERLFSFEFPESPGALLKFLHTLGTHWNISLFHYRSHGTDYGRVLAAFELGE-HE-PDFETRLNELGYECHDETHNPAFRFFL 512
                     5678889***************************************************5.55.6**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 4203.89
//
Query:       CTQ29821.1  [L=296]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-37  128.8   0.5    2.9e-37  128.1   0.5    1.3  1  LysR_substrate  LysR substrate binding domain
      1e-21   76.6   0.4    1.9e-21   75.8   0.4    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
    0.00016   21.4   0.1    0.00033   20.4   0.1    1.5  1  HTH_30          PucR C-terminal helix-turn-helix domain
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.045   13.7   0.0    1.6  1  MarR            MarR family
      0.026   14.1   0.4       0.07   12.7   0.0    1.9  3  HTH_24          Winged helix-turn-helix DNA-binding
      0.052   13.4   0.1       0.13   12.2   0.1    1.7  1  MarR_2          MarR family
      0.058   13.2   0.0       0.53   10.2   0.0    2.3  2  HTH_23          Homeodomain-like domain
      0.074   12.8   0.0       0.11   12.2   0.0    1.3  1  SBP_bac_11      Bacterial extracellular solute-binding protei
      0.082   13.5   0.0        1.2    9.7   0.0    2.2  2  Mga             Mga helix-turn-helix domain
       0.12   12.6   0.0       0.28   11.4   0.0    1.6  1  Fe_dep_repress  Iron dependent repressor, N-terminal DNA bind
       0.14   12.2   0.6        8.2    6.6   0.1    2.8  3  HTH_20          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1   0.5   1.8e-40   2.9e-37       4     204 ..      89     293 ..      86     296 .] 0.94

  Alignments for each domain:
  == domain 1  score: 128.1 bits;  conditional E-value: 1.8e-40
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG..SSSE CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar..gepv 96 
                     l+g+L+i ++ t+a ++lpp+l rfra++P ve+ l++gd ++  +++  ge+Dlai++ p++ +g +a   +e+  v++++p+ p     +  v
      CTQ29821.1  89 LSGELHIFCSVTAAYSHLPPILDRFRAAHPSVEIKLSTGDAADAMEKVVTGEADLAIAGKPETLPGSVAFSMLENLAVVLIAPALPCPVrnQVTV 183
                     79**********************************************************************************98777556677 PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEEC.EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCC..HTTTEEEEEESSTTCEEEEEEEEE CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkp.rvalevnsleallalvaaGlGiallprsavrdel..adgrlvalplpepplprelylvyr 188
                     +  d    p+i+  ++ + r+++e ++r+++++   +  +v   ea++++va G+G+allp+ ++++++   ++r+ +l+ ++ + p+el+++ +
      CTQ29821.1 184 ERPDWSTVPFIM-ADQGPVRRRIELWFRRHKISNpSIYATVGGHEAMVSMVALGCGVALLPEVVLENSPepVRNRVMILERSDEQTPFELGVCAQ 277
                     8889********.558889***********999879******************************888668999999999**9999******** PP

                     TTCCCHHHHHHHHHHH CS
  LysR_substrate 189 kgrelspavrafidfl 204
                     k+r + p++ af+ +l
      CTQ29821.1 278 KKRLHEPLIDAFWKIL 293
                     *************987 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.4   1.2e-24   1.9e-21       1      60 []       3      62 ..       3      62 .. 0.99

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 1.2e-24
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr+l++f+++ae+++f r A+++++s++++srqi+rLEe lg+pLf+R++r ++LTeaGe
  CTQ29821.1  3 LRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLGQPLFVRDNRTVTLTEAGE 62
                79*********************************************************7 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1     2e-07   0.00033       9      50 ..      12      53 ..       5      58 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2e-07
                HHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--TTSHHHH CS
      HTH_30  9 lenggnisatAkaLhvHrnTlryRLrrieellgldlddpddr 50
                l++++   + A+a+hv++ Tl+  ++r+ee lg +l   d+r
  CTQ29821.1 12 LAESRHFGRSARAMHVSPSTLSRQIQRLEEDLGQPLFVRDNR 53
                567788899************************998766665 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.8e-05     0.045      24      43 ..      22      41 ..      22      42 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.8e-05
                HHHHTS-HHHHHHHHHHHHH CS
        MarR 24 akklgvskstvtrvldrLek 43
                a++++vs+st++r++ rLe+
  CTQ29821.1 22 ARAMHVSPSTLSRQIQRLEE 41
                789****************8 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.3e-05      0.07      24      44 ..      22      42 ..      22      42 .. 0.93
   2 ?   -3.1   0.0       3.7   6.1e+03      32      38 ..     199     205 ..     198     206 .. 0.84
   3 ?   -3.4   0.0       4.7   7.7e+03      30      43 ..     250     263 ..     249     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.3e-05
      HTH_24 24 AerlglSpstvnrrlkrLeee 44
                A++ ++Spst++r+++rLee+
  CTQ29821.1 22 ARAMHVSPSTLSRQIQRLEED 42
                78889**************97 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.7
      HTH_24  32 stvnrrl 38 
                 ++v+rr+
  CTQ29821.1 199 GPVRRRI 205
                 89****9 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.7
      HTH_24  30 SpstvnrrlkrLee 43 
                 Sp +v+ r+  Le+
  CTQ29821.1 250 SPEPVRNRVMILER 263
                 78899999988876 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1     8e-05      0.13      28      47 ..      22      41 ..      19      42 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8e-05
                HHHHTSSHHHHHHHHHHHHH CS
      MarR_2 28 arrlglsksavsrilkrLva 47
                ar++++s+s++sr ++rL++
  CTQ29821.1 22 ARAMHVSPSTLSRQIQRLEE 41
                89****************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00032      0.53      24      43 ..      22      41 ..      20      46 .. 0.88
   2 ?   -0.4   0.0      0.65   1.1e+03       5      27 ..     110     133 ..     107     135 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00032
      HTH_23 24 AreLgvsrrTvyrwlkryre 43
                Ar+++vs++T++r ++r +e
  CTQ29821.1 22 ARAMHVSPSTLSRQIQRLEE 41
                89***************854 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.65
      HTH_23   5 reRlrillllae.GlsvreIAreL 27 
                 ++R+r+++   e +ls+ ++A+++
  CTQ29821.1 110 LDRFRAAHPSVEiKLSTGDAADAM 133
                 6899****9999999999999975 PP

>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.9e-05      0.11      13      56 ..     106     149 ..      93     162 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.9e-05
                 HHHHHHHH.HHHH---EEEEESSHHHHHHHHHHH..-SEEEESSH CS
  SBP_bac_11  13 lrelaaaF.eahtgvkvevsaggsgklarqiadgarpDvwipass 56 
                 l  + ++F +ah++v++++s+g+++++++++  g ++D+ i++ +
  CTQ29821.1 106 LPPILDRFrAAHPSVEIKLSTGDAADAMEKVVTG-EADLAIAGKP 149
                 56799***777*******************9988.6777766655 PP

>> Mga  Mga helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00076       1.2      22      59 ..       7      44 ..       3      48 .. 0.85
   2 ?    1.1   0.0      0.37     6e+02      26      54 ..      57      85 ..      53      95 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00076
                HHHHHHHSEEEHHHHHHHCT--HHHHHHHHHHHHHHCH CS
         Mga 22 lkflfeeeevsieelaqelyiSestlkrkikelnklLk 59
                 +fl   e+  + + a+ +++S stl r+i++l++ L 
  CTQ29821.1  7 KTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLG 44
                445557888899999*******************9986 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.37
                HHHSEEEHHHHHHHCT--HHHHHHHHHHH CS
         Mga 26 feeeevsieelaqelyiSestlkrkikel 54
                ++e+  ++  +aq+  +++  l ++i++ 
  CTQ29821.1 57 LTEAGEELRTFAQQTLLQYQQLRHVIDQQ 85
                566677888999999***99999999875 PP

>> Fe_dep_repress  Iron dependent repressor, N-terminal DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017      0.28      29      49 ..      22      42 ..       6      43 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00017
                    HHHHTS-HHHHHHHHHHHHHT CS
  Fe_dep_repress 29 aerLnvspssVsemlkkLekd 49
                    a+++ vsps+ s  +++Le+d
      CTQ29821.1 22 ARAMHVSPSTLSRQIQRLEED 42
                    899***************986 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.005       8.2      22      50 ..      13      41 ..       4      44 .. 0.80
   2 ?   -2.2   0.0       2.7   4.3e+03      21      41 ..      51      72 ..      47      76 .. 0.72
   3 ?    2.7   0.0     0.079   1.3e+02      10      20 ..     200     210 ..     194     231 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.005
                CTTB-HHHHHHHHTS-HHHHHHHHHHHHH CS
      HTH_20 22 aegltaselaerldlskntlsyHLrvLee 50
                ae + ++  a+++ +s++tls++++ Lee
  CTQ29821.1 13 AESRHFGRSARAMHVSPSTLSRQIQRLEE 41
                55555666689999*************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.7
                TCTTB-HHHHHHHHT.S-HHHH CS
      HTH_20 21 raegltaselaerld.lskntl 41
                +++ +t++e  e+l+  +++tl
  CTQ29821.1 51 DNRTVTLTEAGEELRtFAQQTL 72
                5677899999999953666664 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.079
                 HHHHHHHHHHS CS
      HTH_20  10 PvRrrilraLa 20 
                 PvRrri+ +++
  CTQ29821.1 200 PVRRRIELWFR 210
                 9******9993 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2226.17
//
Query:       CTQ29822.1  [L=491]
Description: ketol-acid reductoisomerase, NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-59  197.7   0.2    1.5e-58  197.0   0.2    1.4  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
    1.7e-53  180.8   1.0    4.6e-28   98.3   0.0    2.3  2  IlvC           Acetohydroxy acid isomeroreductase, catalytic 
    0.00029   20.3   0.0    0.00057   19.3   0.0    1.5  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      0.006   17.0   0.1      0.019   15.4   0.0    1.9  2  NAD_binding_7  Putative NAD(P)-binding
  ------ inclusion threshold ------
      0.019   15.1   0.0       0.04   14.0   0.0    1.5  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
      0.039   14.5   0.1       0.93   10.1   0.0    2.9  3  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
      0.039   13.6   0.0      0.071   12.8   0.0    1.5  1  ApbA           Ketopantoate reductase PanE/ApbA


Domain annotation for each model (and alignments):
>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.0   0.2     6e-62   1.5e-58       2     165 .]      35     204 ..      34     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 197.0 bits;  conditional E-value: 6e-62
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-.....HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT-EEEESS CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregs.....ksvkkAkeegfevltvaeavkkadvvmiliPDelqkevyeeeiepnlkegkalafah 95 
                 l+gkk++++G+G+qG +q+ln+rdsgld+ ++lr+++     +s++kA+e+gf+v t++e++ +ad+v++l+PD+++++v+ ++++p +k+g+al ++h
  CTQ29822.1  35 LQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAiaekrASWRKATENGFKVGTYEELIPQADLVVNLTPDKQHSDVV-RSVQPLMKDGAALGYSH 132
                 89********************************988777767**************************************.89*************** PP

                 SHHHHTTSS---TTSEEEEEEESS-SHHHHHHHHTT----EEEEEE..E-SSS-HHHHHHHHHHHTTHHHH- CS
        IlvN  96 GfnihfglikppkdvdvvlvAPkgpGhlvreeyeegkGvpaliave..qdasgkakelalayakgiGatraG 165
                 Gfni+    +++kd++vv+vAPk+pG++vreey++g+Gvp+liav+  +d +g+++++a+a+a ++G++raG
  CTQ29822.1 133 GFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHpeNDPKGEGMAIAKAWAAATGGHRAG 204
                 *********************************************988999********************9 PP

>> IlvC  Acetohydroxy acid isomeroreductase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.0   1.8e-31   4.6e-28       1     134 [.     210     342 ..     210     345 .. 0.97
   2 !   80.9   0.2   4.1e-26   1.1e-22      12     143 ..     357     482 ..     350     483 .. 0.92

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 1.8e-31
                 HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT--HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHS-HHHHHHHHHHHHHH CS
        IlvC   1 FkeEtetDlfgEqavLcGgvselveagFetlveaGyspelAyfeclhelklivdliyegGiakmresiSdtaeygdltagprviteevkeemkeileei 99 
                 F +E+++Dl+gEq++LcG++++    +F++lv++G +p +A + +    + i++ +++gGi+ m++++S+ a+ +++   +++ +e + + +++++++i
  CTQ29822.1 210 FVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKLRAYALSEQL-KEIMAPLFQKHMDDI 307
                 789**************************************9999988889********************************.*************** PP

                 HTTHHHHHHHHHHHTTSHHHHHHHHHHHTSHHHHH CS
        IlvC 100 qsGefakevieenkagrpelkklrkeeaeheiekv 134
                  sGef++ +++++++++++l ++r+e+ ++ +e++
  CTQ29822.1 308 ISGEFSSGMMADWANDDKKLLTWREETGKTAFETA 342
                 *****************************999976 PP

  == domain 2  score: 80.9 bits;  conditional E-value: 4.1e-26
                 HHHTTTHHHHHHHHHHHHHHHHTT--HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHTTHHHHHHHH CS
        IlvC  12 EqavLcGgvselveagFetlveaGyspelAyfeclhelklivdliyegGiakmresiSdtaeygdltagprviteevkeemkeileeiqsGefakevie 110
                   + ++++v++ ve +Fet+v+ G+ +e Ay+e+lhel li+++i+++ +++m+  iSdtaeyg++    ++      + +ke+++  q+G+   + i+
  CTQ29822.1 357 KGVLMIAMVKAGVELAFETMVASGIIEESAYYESLHELPLIANTIARKRLYEMNVVISDTAEYGNYLFSYAC-----VPLLKEFMTTLQTGDLG-TAIA 449
                 55677899**********************************************************998777.....5**************98.6778 PP

                 HHHTTSHHHHHHHHHHHTSHHHHHHHHHHHCHT CS
        IlvC 111 enkagrpelkklrkeeaeheiekvgkklralmp 143
                 e + ++++l++++++ ++h ie+vgkklr +m+
  CTQ29822.1 450 EGAVDNAQLRDVNEAIRSHAIEQVGKKLRGYMT 482
                 8889*************************9985 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.2e-07   0.00057      31     105 ..      32     112 ..       6     128 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.2e-07
                   BS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH......CHHHHTCEECSHHHHHHH-SEEEE-S--STTT CS
  2-Hacid_dh_C  31 gkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkee......eeeelgvelvsleellaesDivslhlpltpet 105
                    + l+gk+v i+G+G+ G +    ++  g+++ +  r++   e      ++ e+g+++ + eel+ ++D v++ +p +++ 
    CTQ29822.1  32 ASYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEkraswrKATENGFKVGTYEELIPQADLVVNLTPDKQHS 112
                   5579*****************************999988744456778899999*******************99966554 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.6e-06     0.019       5      76 ..      35     113 ..      32     119 .. 0.80
   2 ?   -4.0   0.0         7   1.8e+04      30      40 ..     146     156 ..     143     181 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.6e-06
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeee........lekdlegadlviaatddrelne 76 
                    l+gkkv++vG G  +++   ++ ++g ++     + ++++e++ ++++ +        +e+ + +adlv+  t+d++ ++
     CTQ29822.1  35 LQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRK-EAIAEKRASWRKATengfkvgtYEELIPQADLVVNLTPDKQHSD 113
                    79***************************975555.56677777776444344554446999*************98776 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 7
  NAD_binding_7  30 gakvtvvapev 40 
                    + +v++vap+ 
     CTQ29822.1 146 DITVVMVAPKC 156
                    45677788873 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.6e-05      0.04      20     131 ..      34     152 ..      21     166 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.6e-05
                    --TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE.-S-HHHH.....HHHHCTT-EE--HHHCTTT-SEEEE-SSSS...SSB-HHHHCCS-TTEEE CS
  AdoHcyase_NAD  20 llaGkvavvaGyGdvGkGcaaslkglGarvivt.evdPica.....lqaameGfevvtleevvkkadivvtttGnk...diitlehlkkmkddaiv 106
                     l Gk++v++G G  G      ++  G  +  +   + i+       +a+ +Gf+v t ee++ +ad+vv  t  k   d++++     mkd a +
     CTQ29822.1  34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYAlRKEAIAEkraswRKATENGFKVGTYEELIPQADLVVNLTPDKqhsDVVRS-VQPLMKDGAAL 128
                    5789**********99999999999998775431444554311122467889******************99976522256554.44678888877 PP

                    EE-SSTTTTBTHHHHHTTT-EEEEE CS
  AdoHcyase_NAD 107 cniGhfdseidvaaleanalkkeev 131
                    +   h  + ++v +  +++++++ v
     CTQ29822.1 129 GY-SHGFNIVEVGEQIRKDITVVMV 152
                    75.3444445555555555555555 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00036      0.93       1      81 [.      39     118 ..      39     127 .. 0.83
   2 ?   -2.2   0.0       2.5   6.5e+03       8      50 ..     310     349 ..     309     366 .. 0.74
   3 ?    0.5   0.0      0.35   9.1e+02       7      22 ..     441     456 ..     438     480 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00036
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESS..CCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHC CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrn..pekaeelaeelgvkvtavdneeaaeeadvvvlavkpedveevlsel 81 
                    k+ i+G+G +g    +++  +g    +i  a +++   ek+++++++ + + + +++ee++ +ad vv   + +++++v++++
     CTQ29822.1  39 KVVIVGCGAQGLNQGLNMRDSG---LDISYALRKEaiAEKRASWRKATENGFKVGTYEELIPQADLVVNLTPDKQHSDVVRSV 118
                    6789999998888888888888...777766433322699999*************************************998 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
                    SHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EE CS
  F420_oxidored   8 Gnmgealasgllaagaqpheivvansrnpekaeelaeelgvkv 50 
                    G++ ++++  +++ +   ++++   + + ++a e+a +++ k+
     CTQ29822.1 310 GEFSSGMMADWANDD---KKLLTWREETGKTAFETAPQYEGKI 349
                    667777788888888...7777777888888888888887655 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.35
                    TSHHHHHHHHHHHHTT CS
  F420_oxidored   7 aGnmgealasgllaag 22 
                    +G++g a+a+g++ + 
     CTQ29822.1 441 TGDLGTAIAEGAVDNA 456
                    8*********999875 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.8e-05     0.071       1      96 [.      40     126 ..      40     153 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.8e-05
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCE CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldpnt 96 
                 ++i+G+Ga+G   + ++   g d+   lr++ +++ +  + + t++g      +++ + +e    + ++dlv+  ++  q  +++++++pl+++ +
  CTQ29822.1  40 VVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG------FKVGTYEE---LIPQADLVVNLTPDKQHSDVVRSVQPLMKDGA 126
                 68***************99**********996776777777777777......44444444...6799**********************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3517.61
//
Query:       CTQ29823.1  [L=57]
Description: hypothetical protein CH1034_30011 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       114  (0.00635841); expected 358.6 (0.02)
Passed bias filter:                      102  (0.00568911); expected 358.6 (0.02)
Passed Vit filter:                         2  (0.000111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 447.19
//
Query:       CTQ29824.1  [L=93]
Description: peptidyl-prolyl cis-trans isomerase C (rotamase C) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-20   73.7   0.0    1.9e-20   73.5   0.0    1.1  1  Rotamase_3  PPIC-type PPIASE domain
    3.4e-20   72.8   0.0    4.8e-20   72.3   0.0    1.2  1  Rotamase    PPIC-type PPIASE domain
      4e-05   24.4   0.0    4.5e-05   24.3   0.0    1.0  1  Rotamase_2  PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   3.3e-24   1.9e-20      37     114 ..      15      91 ..       2      93 .] 0.93

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 3.3e-24
  Rotamase_3  37 kakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvvktdfGyHiikvtd 114
                 +++a +ll++lk+gadF +lAk+ S  p+ +++GG+lg f +gqmv++F+++vfs ++ e ++++ t+fGyHiikv+ 
  CTQ29824.1  15 EKLALDLLEQLKNGADFGKLAKKHSICPS-GKRGGDLGEFRQGQMVPAFDKVVFSCPELEPTGPLHTQFGYHIIKVLY 91 
                 68999*********************886.*********************************************976 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   8.1e-24   4.8e-20      19      95 ..      15      89 ..       2      90 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 8.1e-24
                HHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEEEEEEE CS
    Rotamase 19 kakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGfhiikl 95
                ++ a ++leqlk+g+d F +lA+k+S  ++s k+gGdlg++++gq++p+f+k++fs  + e ++p +t+fG+hiik+
  CTQ29824.1 15 EKLALDLLEQLKNGAD-FGKLAKKHS-ICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPELEPTGPLHTQFGYHIIKV 89
                578999**********.*********.************************************************98 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   7.4e-09   4.5e-05      27     105 ..       9      89 ..       2      93 .] 0.84

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 7.4e-09
  Rotamase_2  27 lavvkdqvaaeaalalakagaekdfaalakgnskk.....aadlgifesasnlpeelakaafalkpgevsgpvetdngyyivkv 105
                 ++ vk+++ a   l+++k ga  df +lak+ s++      +dlg f++ + +p ++ k +f+ ++ e +gp++t++gy+i+kv
  CTQ29824.1   9 HILVKEEKLALDLLEQLKNGA--DFGKLAKKHSICpsgkrGGDLGEFRQGQMVP-AFDKVVFSCPELEPTGPLHTQFGYHIIKV 89 
                 577888888888999999997..9********9996555555555888888777.****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 690.54
//
Query:       CTQ29825.1  [L=93]
Description: peptidyl-prolyl cis-trans isomerase C (rotamase C) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-20   74.0   0.0    1.7e-20   73.7   0.0    1.1  1  Rotamase_3  PPIC-type PPIASE domain
    1.1e-16   61.6   0.0    1.5e-16   61.1   0.0    1.2  1  Rotamase    PPIC-type PPIASE domain
  ------ inclusion threshold ------
      0.039   14.8   0.0      0.045   14.6   0.0    1.1  1  Rotamase_2  PPIC-type PPIASE domain


Domain annotation for each model (and alignments):
>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   2.8e-24   1.7e-20      36     113 ..      14      90 ..       2      93 .] 0.92

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 2.8e-24
  Rotamase_3  36 akakadsllaalkegadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeiskvvktdfGyHiikvt 113
                  +++a ++la+l++g +F +lAk+yS+ p+ + nGG+lg f++g+mv +F++avfs +  +  ++vkt+fGyHiikv+
  CTQ29825.1  14 EEKLALEILAKLERGVSFDHLAKRYSKCPS-GRNGGDLGEFQQGAMVGPFDQAVFSCPLLKPYGPVKTKFGYHIIKVL 90 
                 368999*********************886.*********************************************97 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   2.6e-20   1.5e-16      19      95 ..      15      89 ..       3      90 .. 0.95

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 2.6e-20
                HHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEEEEEEE CS
    Rotamase 19 kakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGfhiikl 95
                ++ a eil++l+ g + F+ lA++yS  ++s +ngGdlg++++g ++  f++a+fs    +  +pv+tkfG+hiik+
  CTQ29825.1 15 EKLALEILAKLERGVS-FDHLAKRYS-KCPSGRNGGDLGEFQQGAMVGPFDQAVFSCPLLKPYGPVKTKFGYHIIKV 89
                57899*********99.*********.************************************************98 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   7.5e-06     0.045      27     105 ..       9      89 ..       2      93 .] 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.5e-06
  Rotamase_2  27 lavvkdqvaaeaalalakagaekdfaalakgnskk.....aadlgifesasnlpeelakaafalkpgevsgpvetdngyyivkv 105
                 ++ vk+++ a  +la++++g   +f+ lak++sk+      +dlg f++ + ++ ++ +a+f+ +  +  gpv+t +gy+i+kv
  CTQ29825.1   9 HILVKEEKLALEILAKLERGV--SFDHLAKRYSKCpsgrnGGDLGEFQQGAMVG-PFDQAVFSCPLLKPYGPVKTKFGYHIIKV 89 
                 567888888888899999987..8999999999994444455555777777676.9***********9999************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 722.69
//
Query:       CTQ29826.1  [L=673]
Description: DNA helicase and single-stranded DNA-dependent ATPase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-74  250.8   0.4      5e-73  246.4   0.4    2.3  1  UvrD-helicase    UvrD/REP helicase N-terminal domain
    1.3e-72  245.1   0.1    8.8e-72  242.4   0.1    2.0  1  UvrD_C           UvrD-like helicase C-terminal domain
    2.6e-36  125.1   0.1    4.8e-36  124.3   0.1    1.5  1  AAA_19           AAA domain
    1.9e-10   40.4   0.0    1.7e-09   37.4   0.0    2.5  2  UvrD_C_2         UvrD-like helicase C-terminal domain
    8.5e-10   38.7   0.4    2.4e-05   24.1   0.2    2.4  2  AAA_30           AAA domain
    1.9e-06   27.8   0.5      0.015   15.0   0.0    3.5  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00081   17.7   0.1     0.0029   15.9   0.0    1.9  2  Exonuc_V_gamma   Exodeoxyribonuclease V, gamma subunit
  ------ inclusion threshold ------
        0.1   12.0   0.1       0.78    9.2   0.0    2.2  2  PhoH             PhoH-like protein
       0.13   12.6   0.1       0.38   11.1   0.1    1.7  1  RESP18           RESP18 domain


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.4   0.4   2.5e-76     5e-73       1     314 [.       3     265 ..       3     266 .. 0.95

  Alignments for each domain:
  == domain 1  score: 246.4 bits;  conditional E-value: 2.5e-76
                    SSHHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT-HHHHHHHHHCTTSEEEE CS
  UvrD-helicase   1 lnpeqreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdderlrlalqnlseanisT 96 
                    lnp q++a++ ++gp+lv+A+AGsGKT+v++++i++li+ +++++++i +vTFTnkAa+E+keR+ ++l+ +e               ++ ++isT
     CTQ29826.1   3 LNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE---------------ARGLMIST 83 
                    6999******************************************************************986...............89****** PP

                    HHHHHHHHHHHHHGGTTSHTTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCHHHHHHHHHHHT CS
  UvrD-helicase  97 lHsfcqkilkkeanrigldpnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnikkeelslskskaeelrelvskakek 192
                    +H +++ i+k+e+  +g+++nf+++d++d     q +llkel e        ++ +k+                        +++l  ++s++k++
     CTQ29826.1  84 FHTLGLDIIKREYAALGMKSNFSLFDDTD-----QVALLKELTE------GLIEDDKVV-----------------------LQQLISTISNWKND 145
                    *****************************.....99******98......235555555.......................3478899******* PP

                    TCCTTHHCHSSTSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEE CS
  UvrD-helicase 193 qlspkelkkafekasdlqkkiaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasgheelfm 288
                    + +p +  +   ++ ++++ +a+++  y  ++k+ n lDf+dl++ ++ ll++nee++e+++++++++l+DEyQDTn +Qy+++kll+ ++  +++
     CTQ29826.1 146 LKTPAQAAA--GAKGERDRIFAHCYGLYDAHMKACNVLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGQRARFTV 239
                    **9999988..78999******************************************************************************** PP

                    EE-GGG--GGGGTB-THHHHHHHHHS CS
  UvrD-helicase 289 vGDpkQsIYgFRgAdielflkkkkdf 314
                    vGD++QsIY++RgA+++++   ++df
     CTQ29826.1 240 VGDDDQSIYSWRGARPQNLVLLSQDF 265
                    *******************9999988 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.4   0.1   4.4e-75   8.8e-72       1     348 [.     271     613 ..     271     614 .. 0.85

  Alignments for each domain:
  == domain 1  score: 242.4 bits;  conditional E-value: 4.4e-75
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   1 ivLekNyRStksLlkaankflenilnrralekek...ktvekgekivvleaeteeeEaekiaatikall.ekneklediavLvRsnkdadkiskaLkke 95 
                 i+Le+NyRS+ ++lkaan +++n+ +      ek   ++   g +++vl+a++e++Eae +a ++ a+  +++++++d+a+L+R+n++++ ++k L+++
  CTQ29826.1 271 IKLEQNYRSSGRILKAANILIANNPHV----FEKrlfSELGYGAELKVLSANNEDHEAERVAGELIAHHfINKTNYKDYAILYRGNHQSRVFEKMLMQN 365
                 79*******************999999....566678999***********************9999999***************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C  96 gipfnvvdeekfFkreeikdilaylkllankqdkialkrilkrlvlgigkatveri..seelkklglsltDf.ikedtleygeeFieliraleeknlel 191
                 +ip+++ ++++fF+r+eikd+layl++l n++d+ a+ ri+++++++ig+at++++      ++ gl  + f +  +++ +g  + +l+r  +      
  CTQ29826.1 366 RIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLQKLgeWAMGRNKGLFTASFdMGLSQTLTGRGYESLTRFTHW----- 459
                 ********************************************************54455566666555442222233335555544444433..... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx RF
      UvrD_C 192 llkkiektaeerqalvskyadlfkelaeklaelkekseskrkkee.klenlreLysllkelekkeeeeeveeklneileiatLseseleeskkk..eki 287
                  l++i++ a   ++ v++ +dl + +  + +  +   + k+   e +++n+++L++++ e+ + +e  e+++ l+++++  tL+++ +++++++  +++
  CTQ29826.1 460 -LREIQQLA--EREPVNAVRDLIRGIDYESWLYETSPSPKA-A-EmRMKNVNQLFTWMTEMLEGSEIDEPMT-LTQVVTRFTLRDMMERGESDEelDQV 552
                 .33344433..346677777777777665554443333333.3.459****************999999988.************9999888877**** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 288 piiTiHqAKGlEFdvVflagleegtfPsyrskkekrleEEkRlfYVaiTRAkkrLfisysk 348
                 +++T+H++KGlEF++V+l+g+eeg +P++ s +e++++EE+Rl YV+iTRA+k+L+++++k
  CTQ29826.1 553 QLMTLHASKGLEFPYVYLVGMEEGLLPHQSSIDEDNVDEERRLAYVGITRAQKELTFTLCK 613
                 *********************************************************9987 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.1   2.4e-39   4.8e-36       1     144 [.       7     249 ..       7     251 .. 0.95

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 2.4e-39
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.......atTiHrlal............... 77 
                 q++av ++  +++lv+aG+G+GKTrv++ ++a+l++  g ++++i++v+ft++Aa+e++er+ + +++       ++T+H l+l               
  CTQ29826.1   7 QQQAV-EFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRkearglmISTFHTLGLdiikreyaalgmksn 104
                 899**.*******************************************************955555589*************9*************** PP

      AAA_19  78 ............................................................................ldfddlltealelle.eaeeekk 99 
                                                                                             ldfddl+  +  ll+ ++e ++ 
  CTQ29826.1 105 fslfddtdqvallkelteglieddkvvlqqlistisnwkndlktpaqaaagakgerdrifahcyglydahmkacnvLDFDDLILLPTLLLQrNEEVRER 203
                 ***********************************************************************************9999999974455566 PP

      AAA_19 100 lqeee.llivDEfqdvdelqyrLlkallgekkklllvGDpdQliyv 144
                  q++  +l+vDE+qd++  qy+L+k l+g+++++++vGD+dQ+iy+
  CTQ29826.1 204 WQNKIrYLLVDEYQDTNTSQYELVKLLVGQRARFTVVGDDDQSIYS 249
                 667777*************************99************8 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.99     2e+03      25      43 ..     495     513 ..     491     513 .. 0.79
   2 !   37.4   0.0   8.5e-13   1.7e-09       4      50 ..     554     608 ..     552     610 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.99
    UvrD_C_2  25 laaarmgelrrrlLYtavT 43 
                   aa+m + + + L+t +T
  CTQ29826.1 495 PKAAEMRMKNVNQLFTWMT 513
                 4567788889******988 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 8.5e-13
    UvrD_C_2   4 altihkaQGsefpaVivfdpdlaaarmgel........rrrlLYtavTRArekli 50 
                  +t h ++G+efp+V+++ +++   ++            rrl+Y+++TRA+++l+
  CTQ29826.1 554 LMTLHASKGLEFPYVYLVGMEEGLLPHQSSidednvdeERRLAYVGITRAQKELT 608
                 589**************999855444433355888899**************997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.2   1.2e-08   2.4e-05       2      67 ..       3      68 ..       2      90 .. 0.83
   2 !   12.2   0.0   5.4e-05      0.11      77     157 ..     194     279 ..     154     300 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.2e-08
      AAA_30  2 lnaeQaaavealltsgdrvavltGpAGtGKttalkal.reaweaag...grviglAptgkaAkvLaeelg 67
                ln++Q++ave ++t++   +++ ++AG+GKt +++   +++++  g   +++++++ t+kaA++++e +g
  CTQ29826.1  3 LNPGQQQAVE-FVTGP---CLVLAGAGSGKTRVITNKiAHLIRGCGyqaRHIAAVTFTNKAAREMKERVG 68
                99*******6.77888...79999********998652666665587778899999**********9988 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5.4e-05
      AAA_30  77 lkrlk.grarlepg.tllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlvea....agigtaeLtevvRq 157
                 l+r++  r+r++++ + l+vDE   ++t+q + l+k +  + a+  +vGD++Q     +G+  + lv       + ++++L++++R 
  CTQ29826.1 194 LQRNEeVRERWQNKiRYLLVDEYQDTNTSQYE-LVKLLVGQRARFTVVGDDDQSIYSWRGARPQNLVLLsqdfPALQVIKLEQNYRS 279
                 445557668999999*************9986.66666666************7555555544444322112223366666666665 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.1    0.0039       7.7       2      21 ..      19      38 ..      18      87 .. 0.75
   2 ?    2.5   0.0      0.05     1e+02      62     105 ..     207     251 ..     196     268 .. 0.74
   3 !   15.0   0.0   7.7e-06     0.015     165     232 ..     524     609 ..     497     611 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0039
  Viral_helicase1  2 vvhGvpGcGKStlirkllrt 21
                     +v + +G+GK+++i + + +
       CTQ29826.1 19 LVLAGAGSGKTRVITNKIAH 38
                     78899*********998877 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.05
  Viral_helicase1  62 kgkililDEylllhaGyill..laalskaklvilfGDplQipfhsr 105
                      k ++l++DEy+  ++ + +l  l+   +a  + ++GD  Q+ ++ r
       CTQ29826.1 207 KIRYLLVDEYQDTNTSQYELvkLLVGQRA-RFTVVGDDDQSIYSWR 251
                      5679********99998888544444444.6889999999988765 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 7.7e-06
  Viral_helicase1 165 kvlvyltftqalkealgvr..........evttvhevqGltfdkVtlvllketdlelis.........esrenllvAlTRhrkslvi 232
                      ++++    t+ +++++++r          + +t h   Gl+f+ V lv  +e  l   +         e+r   +v++TR+ k+l++
       CTQ29826.1 524 PMTLTQVVTRFTLRDMMERgesdeeldqvQLMTLHASKGLEFPYVYLVGMEEGLLPH-QssidednvdEERRLAYVGITRAQKELTF 609
                      566667777778888888888899999999******************886654333.247777888888**************998 PP

>> Exonuc_V_gamma  Exodeoxyribonuclease V, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.74   1.5e+03     393     444 ..     356     407 ..     355     410 .. 0.75
   2 !   15.9   0.0   1.4e-06    0.0029     504     665 ..     424     589 ..     418     598 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.74
                     HHTSCSTTTT---EEE-SEETGGGHHHHHHHHHHGGGGG----HHHHHHHTT CS
  Exonuc_V_gamma 393 aVFgaaederklpysiaDrsakeespllaaflelLeLpesrftasevldlLe 444
                      VF++   ++++py+i++ +   ++p ++ +l  L++ ++    s +l++++
      CTQ29826.1 356 RVFEKMLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVN 407
                     58977779999******99988888888888888887766666666666555 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.4e-06
                     HSS-STT--SSS----TTS-SCTHHHHHHHHHHHHHHHHHHHHSSS-B-HHHHTTHHHHHHHHH-.....---SHHHHHHHHHHHHHHHHHHHHH CS
  Exonuc_V_gamma 504 yalgeengllegilpydevegseaellgklaellerLekwrqrlskprtleeWlerlselledff.....aedeeeeeelqelrealaelaeeaa 593
                     +a+g ++gl+   + +  +++++    + l ++ + L++++ +l++++++++ ++ ++ +  +          ++ e  ++++++ ++ ++e  +
      CTQ29826.1 424 WAMGRNKGLFTASFDMGLSQTLTGRGYESLTRFTHWLREIQ-QLAEREPVNAVRDLIRGIDYESWlyetsPSPKAAEMRMKNVNQLFTWMTEMLE 517
                     56777777777777776667777777777777777777654.566677777777776654333222343244566667799999999999***** PP

                     HTT--S-B-HH.HHHHHHHHHHHH-EE-TTTTSSSEEEEE--TT----EEEEEEE--BTTTSS------SS-H CS
  Exonuc_V_gamma 594 aakfeqelsle.vvrelleerlsqesasqrfltGkvtfctllpmrsiPfrvvclLGlndgdfPrqdepagfDl 665
                      ++ +++++l+ vv +   + + ++  s      +v++ tl   + + f  v+l+G+++g  P+q + ++ ++
      CTQ29826.1 518 GSEIDEPMTLTqVVTRFTLRDMMERGES-DEELDQVQLMTLHASKGLEFPYVYLVGMEEGLLPHQSSIDEDNV 589
                     *******777615555555556665555.88899*******************************99998886 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.31   6.2e+02       8      38 ..       6      34 ..       2      77 .. 0.67
   2 ?    9.2   0.0   0.00039      0.78     122     158 ..     210     246 ..     163     278 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.31
                HHHHHHHHHHH-SEEEEE--TTSSTTHHHHH CS
        PhoH  8 eQkeylealkkndivfaiGpaGtGKtylava 38
                +Q++++e ++   +v  ++ aG+GKt + + 
  CTQ29826.1  6 GQQQAVEFVTGPCLV--LAGAGSGKTRVITN 34
                566666666555444..5679****976554 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00039
                 EEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE----- CS
        PhoH 122 fvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqi 158
                 ++++DE Q+t+++q + +   +G+ +++ v+Gd  q 
  CTQ29826.1 210 YLLVDEYQDTNTSQYELVKLLVGQRARFTVVGDDDQS 246
                 789******************************9886 PP

>> RESP18  RESP18 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00019      0.38       7      43 ..     111     147 ..     109     152 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
      RESP18   7 agqlwplqqvtapvlqqLqvvLrQlvpqglfWkddlt 43 
                 ++q+  l+++t ++++  +vvL+Ql++    Wk+dl 
  CTQ29826.1 111 TDQVALLKELTEGLIEDDKVVLQQLISTISNWKNDLK 147
                 57888899***************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4450.37
//
Query:       CTQ29827.1  [L=240]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-63  211.8  18.3    9.6e-63  211.6  18.3    1.0  1  DUF554    Protein of unknown function (DUF554)


Domain annotation for each model (and alignments):
>> DUF554  Protein of unknown function (DUF554)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.6  18.3   5.3e-67   9.6e-63       1     219 [.       3     232 ..       3     233 .. 0.97

  Alignments for each domain:
  == domain 1  score: 211.6 bits;  conditional E-value: 5.3e-67
      DUF554   1 lGtivNvlaillGsllGlllkkrlperlqktlmqalGlvvlliGismalksenvllvilslvlGaviGelldleerlerlgealkkkvkksk....... 92 
                 +G++v + + l+G+l+G+ l++ +pe+++ktl  + Gl+++ +Gi  + k +n++ + l++++G++iG ll++e+++er+g++l++ +++         
  CTQ29827.1   3 IGIFVCSGSLLVGALAGASLNRFIPEHFKKTLPLIAGLISISMGIFFVNKLHNLPPIALAIIVGTIIGGLLNIEKWIERAGTTLRSPIERIFpaqssas 101
                 68999999****************************************9999******************************99999987778888999 PP

      DUF554  93 ....rfaegfvtasllfcvGamailGslqeGltgdatlLltKslLDgvtaiilasslGigvlfsalpvlvyqgaitllAgllapllteaviaeltavGg 187
                     +f+++f+++ +lfc+++++i+G+l+eG+tgd+t+LltKs+LD++ta+i+as+lG+ + ++++p+l++ ++++++A+++++l+++++ia++ta+Gg
  CTQ29827.1 102 vgaeDFMNQFIAVLILFCASGTGIFGALTEGMTGDPTILLTKSILDFFTAAIFASTLGYIITVIFIPQLIVFVILFFAATFIMALINPSMIADFTACGG 200
                 99889********************************************************************************************** PP

      DUF554 188 llilaiGlnlleikkikvanllPalllavllv 219
                 +++la+G++l++i+ +++an+lP+l+l+++++
  CTQ29827.1 201 IIMLATGFRLCGIRAFPTANMLPSLILVMPFS 232
                 *****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1820.18
//
Query:       CTQ29828.1  [L=332]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-38  131.6   0.1      6e-38  131.3   0.1    1.1  1  Amidohydro_2  Amidohydrolase
  ------ inclusion threshold ------
      0.029   14.0   0.0      0.044   13.4   0.0    1.3  1  SAICAR_synt   SAICAR synthetase
      0.047   13.6   1.1        7.4    6.6   0.0    2.6  2  DUF1778       Protein of unknown function (DUF1778)


Domain annotation for each model (and alignments):
>> Amidohydro_2  Amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3   0.1     1e-41     6e-38      16     290 ..      35     330 ..       9     331 .. 0.82

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 1e-41
                   CCCCGGCTSCCCHHHHHCHHTSSECCCEHCHHHHHHHHTSHHCHHHHHHHHHHHHHHHHHHHHH.HCTTCBECEEECTSSHCHHHHHHHHHHHHTTE CS
  Amidohydro_2  16 ddgepngfdpeerlafmkragvdpqlaspeallvlnaaagiaravivaalcrgannrvlaeaak.rpdrfvggaavvpldpedaaaeleraveelgf 111
                   +d+e++  d   +l++m+++++d   +s++   +   + + a+av +a+ +   n+ +++   k +pd f ++a++++++pe+aa+elerav++lg 
    CTQ29828.1  35 KDVERRLLDRSIQLEEMAQRHIDHVILSLTSPGAQS-ILDKAKAVSFARDT---NDFIVENYVKpNPDKFSAFATLALQNPEAAAEELERAVKKLGM 127
                   56677778888999*********9998888766665.55666666666666...9999999998579****************************** PP

                   CEEEEESSTTTCCTTTCGGH.....HHHHHHHHHHT-EEEEE.....................CHHHCHHHHHHHHHHHHHHHCCHHHHCTTSEEEE CS
  Amidohydro_2 112 kGvrlnphvggddllgdrld.....rpifealeelglpvdihtGps.................pewlfggpqettraiqplllsgvarkfPnlkivl 186
                   kG  +n   + +d  +  +        ++ + +el++pv++h  p                  +   +g++qet+ +  +l +sg+++++Pnl++vl
    CTQ29828.1 128 KGALINGYTNVKDSEHGLYLddesmLVFWDKVNELNVPVYLH--PReplegpargiytgyeslIGSAWGFAQETAVHAIRLMMSGLFDRYPNLNLVL 222
                   **9999999999999988888888889***************..5566888889999999999999******************************* PP

                   SGGGTTTTCHHHHHHHHHHHHHCCEEECCGHHH..............SSE.EECCHHCHHHHHHHHHHH-GGGEEEE--BTSTTSTSCTTHHHHCHH CS
  Amidohydro_2 187 aHgGgpserlraalellarrpnvyvklsglyte..............lly.fdspladppalarlieavgpdrilfGsDyPhptleaepealalldl 268
                    H+G +   l  +l++  +r  ++ ++++   +              +++ ++s  +  ++l+ +ie+ g+dr++f+ DyP+ +  +  ++++ l+l
    CTQ29828.1 223 GHLGEG---LVHMLPRTQHRL-YRQRFGC---GlgkaekplmhylqnNFIvTTSGHFNTHSLNNAIEVMGADRVMFSVDYPYEDIHQACDWFDPLEL 312
                   ******...555555555555.3333333...12335777777777633303455556677************************999999999998 PP

                   HHHSSHHHHHHHHTHHHHHHCT CS
  Amidohydro_2 269 vallsdeerekilggNAarlyg 290
                        + ++eki++gNA r+++
    CTQ29828.1 313 ----EAGLKEKIAWGNASRVFN 330
                   ....****************97 PP

>> SAICAR_synt  SAICAR synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.4e-06     0.044     198     242 ..       3      45 ..       1      55 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.4e-06
                  TEEEEES--.STTTEEEEETTT.....GGGB-STHHHHTT-STHH CS
  SAICAR_synt 198 gelvLaDevltpDssRfwdaetyeegkeqeslDKqfvRdwleeve 242
                  g++ L   v tp++ R+wd++  e+g++ +++ K++ R+ l + +
   CTQ29828.1   3 GKIALEEHVSTPENNRLWDSSG-EAGRNGTEYMKDVERRLLDR-S 45 
                  899999***************9.99*************98876.3 PP

>> DUF1778  Protein of unknown function (DUF1778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0012       7.4       6      34 ..      64      93 ..      63      96 .. 0.90
   2 ?    5.0   0.4    0.0037        22      52      77 ..      98     124 ..      93     126 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0012
     DUF1778  6 ispeakeliqrAAalsg.ktltdFvleaal 34
                +sp a++++++A a+s  ++ +dF++e+ +
  CTQ29828.1 64 TSPGAQSILDKAKAVSFaRDTNDFIVENYV 93
                67889***********99********9876 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0037
     DUF1778  52 edfqafv.aaLdeppkpnprLlkaarr 77 
                 ++f+af   aL++p ++ ++L++a+++
  CTQ29828.1  98 DKFSAFAtLALQNPEAAAEELERAVKK 124
                 6788888458**************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2470.39
//
Query:       CTQ29829.1  [L=308]
Description: Transcriptional regulator, LysR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-22   78.5   3.1    6.5e-22   77.9   3.1    1.3  1  LysR_substrate  LysR substrate binding domain
    3.1e-14   52.7   0.0      6e-14   51.7   0.0    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   3.1   7.2e-26   6.5e-22       2     204 ..      92     293 ..      91     298 .. 0.91

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 7.2e-26
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTT.EEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPe.velelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.ge 94 
                     ++ ++ ++ig+++    +llp l  +++++  + +++ ++  d e+ l++l++g+ Dlai ++ + ++++  ++L+++ +v++a+++hp  r ++
      CTQ29829.1  92 QQSQRNFTIGMTDISQMTLLPLLQIALQQQAADgITFTVQNLD-EQTLNALESGKCDLAIGYLTQLPESVYQQHLFDQSYVCLAAENHP--RiRA 183
                     57788899****9988888888877777666656******999.999999**************************************8..6678 PP

                     SECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEET CS
  LysR_substrate  95 pvsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrk 189
                     ++++ed ++e+++  + + + +  ++++l+e+  ++r+al++ s+    +lva  ++ia++p+ ++r+  ++   + +plp p ++ ++  v+++
      CTQ29829.1 184 QLRAEDWRQEKHLAIRVEGTAHGDMDKLLDEHHMPRRIALTLPSFLGTGELVAESDMIAVVPEQVARHITRRYPCRSWPLPFPLAKIAIRQVWHQ 278
                     99******************************************************************99************5555********* PP

                     TCCCHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidfl 204
                     + +++p   +++ ++
      CTQ29829.1 279 RLHRDPGHIWLRSLI 293
                     ***999877777666 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   6.7e-18     6e-14       2      59 ..       8      65 ..       7      66 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 6.7e-18
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                + lr f a+ + g+++ AA++L +sqp+ s  +k+L++++ +pLf+R g+++ +T+++
  CTQ29829.1  8 KSLRFFSALYRLGNVSPAADALDISQPTGSLLLKKLRDHFADPLFVRVGQRMIPTPRA 65
                689****************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2157.98
//
Query:       CTQ29830.1  [L=502]
Description: guanosine pentaphosphatase/exopolyphosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-100  335.4   1.1   4.1e-100  334.9   1.1    1.2  1  Ppx-GppA  Ppx/GppA phosphatase family


Domain annotation for each model (and alignments):
>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.9   1.1  2.3e-104  4.1e-100       1     283 [.      23     303 ..      23     305 .. 0.99

  Alignments for each domain:
  == domain 1  score: 334.9 bits;  conditional E-value: 2.3e-104
                 EEEEECTTEEEEEEEEEEE--CCCCCHCCSSC-HHHHHHHHHHHHHHHHHCCCTTGCCEEEEEEHHHHHSTTHHHHHHHHCCCCSS-EEEE-HHHHHHH CS
    Ppx-GppA   1 viarkaagllqivarekrkvrLaeglnesgrlqeeaiertisaLkefaellqkfkvenvrvVATsalRdavNadeFlarvkkevglkveiisgeeEarl 99 
                 +++r++ag++q+++r krkvrLa+gln+++ l+ ea+er++++L++fae+lq+++++++rvVAT++lR avNa eFla++++ +g +v++isgeeEarl
  CTQ29830.1  23 LVVREVAGSIQTLSRIKRKVRLAAGLNSDNTLSAEAMERGWQCLRLFAERLQDIPPTQIRVVATATLRLAVNAGEFLAKAQEILGTPVQVISGEEEARL 121
                 599************************************************************************************************ PP

                 HHHHHHHHT.---SSEEEEEEETTEEEEEEEETTEEEEEEEES--CCHHHHHHSGCCC--HHHHHHHHHHHHHHCTTTHHHHCCCEHHCCCCCCCHCCH CS
    Ppx-GppA 100 iylgvvssl.lekgrglviDiGGGStElvlgeekevsklvSlplGavrlterfltddpltkeeveaarkavekeleevkdevkkegewtrlvgtsgtis 197
                 iy+gv++++  +++r lv+DiGG+StElv+g+++++++l+Sl++G+v+++er+++d+ ltke+++ a++a++++l +v+d ++++g w+++vg+sgt++
  CTQ29830.1 122 IYQGVAHTTgGADQR-LVVDIGGASTELVTGTGAQTTSLFSLSMGCVTWLERYFADRSLTKENFDLAEAAAREVLLPVADVLRYHG-WKVCVGASGTVQ 218
                 *********777777.**********************************************************************.************ PP

                 HCHHHHHHCT.SSCEEEHHHHHHHHHHHCTSSCHHHHHSTTS-CCHHCTHHHHHHHHHHHHHHCT-SEEEEES--HHHHHHHHHHH CS
    Ppx-GppA 198 alaeltelhgekgyeitaeeleeliekllqlkkeeelklagvsdeRadvivagalilsavlealeieaviisegalrEGvlyslll 283
                 al+e+++++g ++++it ++l++l ++++q+ + eel+++g++ eRa+v+++g++il a++ +l+i+++++++galrEG++y++l+
  CTQ29830.1 219 ALQEIMMAQG-MDERITLAKLQQLKQRAIQCGRLEELEIEGLTLERALVFPSGLAILIAIFSELNIQCMTLAGGALREGLVYGMLH 303
                 **********.*************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3720.76
//
Query:       CTQ29831.1  [L=421]
Description: ATP-dependent RNA helicase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-46  156.7   0.0    7.8e-45  152.8   0.0    2.1  2  DEAD           DEAD/DEAH box helicase
    8.7e-30  103.3   0.0    1.3e-28   99.5   0.0    2.2  2  Helicase_C     Helicase conserved C-terminal domain
    1.1e-05   25.5   0.0    1.9e-05   24.7   0.0    1.3  1  ResIII         Type III restriction enzyme, res subunit
     0.0057   15.9   0.0     0.0083   15.4   0.0    1.2  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
  ------ inclusion threshold ------
       0.02   15.2   0.0      0.067   13.5   0.0    1.9  1  AAA_22         AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.8   0.0   2.2e-48   7.8e-45       1     174 [.      33     206 ..      33     208 .. 0.95
   2 ?    1.8   0.0     0.051   1.8e+02      48     105 ..     257     314 ..     243     325 .. 0.72

  Alignments for each domain:
  == domain 1  score: 152.8 bits;  conditional E-value: 2.2e-48
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.....TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.....kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl 94 
                 t+iQa a+pl+l+g+dv ++a+TG+GKT+afl   ++ ++++     ++ ++p+ali++PtreLa q++ +++ + + ++l++ l +gg+ +++ql++l
  CTQ29831.1  33 TPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHpaiadRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL 131
                 89*************************************999****99*************************************************** PP

                 HTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  95 dngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 ++gvdi++gt+grl+d  +++++nl  ++++VlDEadr+ d gf ++i+ +++++p +t++       +++SATl+  v+
  CTQ29831.1 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQRL-----NMLFSATLSYRVR 206
                 *******************************************************8555554.....5*******96655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.051
                 -EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH...TT.CSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx.xxxxxxxx RF
        DEAD  48 pkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld...ng.vdivvgtp 105
                  +a++ + t+  +e++  +l   ++    rv l++g+va+++ l+ l+   +g +di+v+t 
  CTQ29831.1 257 DRAIVFANTKHRCEDIWGHLAADGH----RVGLLTGDVAQKKRLRILEeftRGdLDILVATD 314
                 4777777777777777777777777....7778899999988888885333447*****995 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.12   4.2e+02      11      73 ..      79     141 ..      66     163 .. 0.77
   2 !   99.5   0.0   3.7e-32   1.3e-28       2     111 .]     243     351 ..     242     351 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.12
                 HHTTTTSEEEEEESSHH...HHHH...HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  11 kleeeggkilifvntid...rlek...vklllekkgikvavlhgelpqnereeileqfnkgesdvLiat 73 
                 ++++++ ++li+++t++   +      ++ l +  g+k    +g    ++++++le+     +d+Li t
  CTQ29831.1  79 DRQVNQPRALIMAPTRElavQ--IhadAEPLAQATGLKLGLAYGGDGYDKQLKVLESG----VDILIGT 141
                 677899999*******97442..24456666666699999999999999999988876....5666665 PP

  == domain 2  score: 99.5 bits;  conditional E-value: 3.7e-32
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 k++ l  ll +ee  +++++f+nt+ r+e+    l    g +v  l+g+  q++r++ile+f +g+ d+L+atdva+rG+ ip v++V+n+dlp++ ++
  CTQ29831.1 243 KMRLLQTLL-EEEWPDRAIVFANTKHRCEDiWGHL-AADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCED 339
                 677788888.9999**************9654444.4669*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y++riGRtgRag
  CTQ29831.1 340 YVHRIGRTGRAG 351
                 **********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.3e-09   1.9e-05      30     153 ..      52     179 ..      23     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.3e-09
                 EESTTSTHHHHHHHHHHHH-S.............-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH. CS
      ResIII  30 kmaTGtGKTlvaaklierllkkgkee........kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadse 119
                 ++ TGtGKT+  +  + ++l +++          ++l+++p+++l  q   + + +++ +  + g  + gd++++  +  ++  +il+ t+ +l     
  CTQ29831.1  52 QAQTGTGKTMAFLTSTFHYLLSHPAIadrqvnqpRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKqLKVLESGVDILIGTTGRLIDYA- 149
                 578*********888888888776557999******************************9999999*****999777788999*******9999988. PP

                 .......HHHTTT-SEEEEETGGGTTS.TTTHHH CS
      ResIII 120 eeeeeseellrdrfdviiiDEaHrlgakkswrei 153
                     ++++   ++++v++ DEa r+++  +++ i
  CTQ29831.1 150 ----KQNHINLGAIQVVVLDEADRMYDLGFIKDI 179
                 ....89****************999997555555 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.3e-06    0.0083      33     128 ..     231     328 ..     210     355 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.3e-06
  ERCC3_RAD25_C  33 kkkkllyvmnpnkfracefLikyhekrgDkiivfsDnvfaLkey.....akklkkpyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlP 123
                     k +l+y  n +k+r ++ L++  e+  D+ ivf++  +  +++     a   +  +++G++++++rl+il++f +  +++ ++   v+   + +P
     CTQ29831.1 231 IKEELFYPSNEEKMRLLQTLLE--EEWPDRAIVFANTKHRCEDIwghlaADGHRVGLLTGDVAQKKRLRILEEFTRG-DLDILVATDVAARGLHIP 323
                    47789999***********986..8999******99998887652222144556679*****************876.688899999999999999 PP

  ERCC3_RAD25_C 124 eanvl 128
                      + +
     CTQ29831.1 324 AVTHV 328
                    88766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.9e-05     0.067      13     117 ..      54     184 ..      52     206 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.9e-05
      AAA_22  13 esGtGKTtl..lrrlleqldeeakaee...erpevvfvtlpsst..sskdllrellralglelka....................erlsseell.eale 83 
                 ++GtGKT+     ++++ l  ++++++   ++p+ + + ++ +        ++ l++a+gl+l                        +++ +l+  a +
  CTQ29831.1  54 QTGTGKTMAflTSTFHYLL-SHPAIADrqvNQPRALIMAPTRELavQIHADAEPLAQATGLKLGLayggdgydkqlkvlesgvdiLIGTTGRLIdYAKQ 151
                 7899999851134444544.4555555687666666666665556777777778888877766667888889999999998888888889999977777 PP

      AAA_22  84 qalraravielliiDEaqhlrseealeeLrslln 117
                 ++++  a  +++++DEa+++     ++++r l+ 
  CTQ29831.1 152 NHINLGAI-QVVVLDEADRMYDLGFIKDIRWLFR 184
                 77777777.**********954666666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3223.47
//
Query:       CTQ29832.1  [L=109]
Description: thioredoxin 1 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-34  116.1   0.0      7e-34  115.9   0.0    1.0  1  Thioredoxin    Thioredoxin
    8.6e-08   32.6   0.1      7e-07   29.7   0.1    1.9  1  Thioredoxin_2  Thioredoxin-like domain
      5e-07   30.0   0.0    3.5e-05   24.0   0.0    2.1  2  Thioredoxin_8  Thioredoxin-like
    7.8e-05   22.5   0.0    8.2e-05   22.4   0.0    1.1  1  Thioredoxin_9  Thioredoxin
    8.4e-05   22.5   0.0     0.0001   22.2   0.0    1.1  1  TraF           F plasmid transfer operon protein
     0.0022   18.0   0.0     0.0029   17.6   0.0    1.2  1  Thioredoxin_3  Thioredoxin domain
     0.0057   16.6   0.0      0.012   15.5   0.0    1.5  1  AhpC-TSA       AhpC/TSA family
     0.0088   16.0   0.0      0.018   15.0   0.0    1.4  1  Thioredoxin_6  Thioredoxin-like domain
     0.0089   15.7   0.0      0.028   14.1   0.0    1.7  2  Redoxin        Redoxin
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.013   14.9   0.0    1.2  1  OST3_OST6      OST3 / OST6 family, transporter family
      0.065   13.0   0.0        1.5    8.6   0.0    2.0  2  DSBA           DSBA-like thioredoxin domain
       0.07   13.6   0.0        0.1   13.0   0.0    1.3  1  DUF836         Glutaredoxin-like domain (DUF836)
      0.084   13.1   0.0       0.15   12.3   0.0    1.4  1  Thioredoxin_7  Thioredoxin-like
       0.11   12.5   0.0       0.16   12.0   0.0    1.2  1  HyaE           Hydrogenase-1 expression protein HyaE


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0   5.4e-37     7e-34       2     102 ..       5     105 ..       4     106 .. 0.98

  Alignments for each domain:
  == domain 1  score: 115.9 bits;  conditional E-value: 5.4e-37
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHH CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaa 99 
                  +++lt+++F+++v k++ l lv+F+A+wCg+Ck++aP l+++aee+++k+++ak+++d+n+ +a ky+++giPtl+lfkng+ +++ +ga +k +l++
   CTQ29832.1   5 IIHLTDDSFDTDVLKADGLTLVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE 102
                  6899********************************************************************************************** PP

                  HHH CS
  Thioredoxin 100 flk 102
                  fl+
   CTQ29832.1 103 FLD 105
                  997 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.1   5.5e-10     7e-07       8     109 .]      24     104 ..      18     104 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 5.5e-10
  Thioredoxin_2   8 vlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgkeivarlpGyvpa 102
                    +lv+f++++C+ Ck +   l+e+    +      ++ +   +  +i++++               a kyg+rg Pt++ f +g+ ++a+ +G++++
     CTQ29832.1  24 TLVDFWAEWCGPCKMIAPILDEI---AEE-----YQGKLTVAKLNIDQNPGT-------------APKYGIRGIPTLLlFKNGE-VAATKVGALSK 97 
                    89*************99988888...555.....677777778888888877.............6**********66488888.999******** PP

  Thioredoxin_2 103 eeleall 109
                     +l++ l
     CTQ29832.1  98 GQLKEFL 104
                    9999876 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.7e-08   3.5e-05       3      46 ..      23      64 ..      21      69 .. 0.90
   2 ?    4.1   0.0     0.046        58      77      92 ..      70      84 ..      66      87 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.7e-08
                   EEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS- CS
  Thioredoxin_8  3 vvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkk 46
                   ++l+ f+a+wc pck + p l+e+ e+++   k+ +  +++d++
     CTQ29832.1 23 LTLVDFWAEWCGPCKMIAPILDEIAEEYQ--GKLTVAKLNIDQN 64
                   689*************************9..8888888887775 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.046
                   -S--TT-SEEEEE-TT CS
  Thioredoxin_8 77 kynvkaiPtlvvldkn 92
                   ky++ +iPtl++ + n
     CTQ29832.1 70 KYGIRGIPTLLLFK-N 84
                   79*******88765.4 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   6.4e-08   8.2e-05      45     108 ..      25      86 ..       4     105 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6.4e-08
                    EEEE--TT-HHHHHHHHHHHHHH.HH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT- CS
  Thioredoxin_9  45 ilvltedwCgDaavnvPvlakia.elnpnievkillrdenlelmdqyltngaraiPtliildeeg 108
                    ++ + ++wCg + ++ P+l++ia e++ +++v  l  d+n+ +  +y   g r iPtl++++++ 
     CTQ29832.1  25 LVDFWAEWCGPCKMIAPILDEIAeEYQGKLTVAKLNIDQNPGTAPKY---GIRGIPTLLLFKNGE 86 
                    5556789***************9556789******************...88******9998763 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   7.8e-08    0.0001     133     221 ..      25     102 ..      18     104 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 7.8e-08
        TraF 133 LlfFyrgkcpyceaqapilqafadky..glevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpksqkvvpvaaGllsldelee 221
                 L+ F ++ c+ c++ apil+++a++y  +l+v   ++d++p   ++          ++g++ +P+l+l++    +v++  +G+ls  +l+e
  CTQ29832.1  25 LVDFWAEWCGPCKMIAPILDEIAEEYqgKLTVAKLNIDQNPG--TAP---------KYGIRGIPTLLLFKNG--EVAATKVGALSKGQLKE 102
                 66688999******************7779999999999988..344.........6************988..89999999999999876 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.2e-06    0.0029      10      75 ..      33     104 ..      26     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.2e-06
                    STTCHHHHHHHHHHCHCCTCECEEECC..TTHHHH.HHCT-SSSSEE..ECTTCEEEE..SS---CCHHHHHH CS
  Thioredoxin_3  10 CakCpklekavkeaaaekgikaevekv..tdfeei.ekygVmsvPal..vidgkvvvs..Gkvpseeeirkll 75 
                    C  C+ ++ ++ e+a+e + k++v k    +++    kyg++ +P+l  + +g+v ++  G + s+ +++++l
     CTQ29832.1  33 CGPCKMIAPILDEIAEEYQGKLTVAKLniDQNPGTaPKYGIRGIPTLllFKNGEVAATkvG-ALSKGQLKEFL 104
                    999***************999988776544444445**********966669**9874338.78888888776 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.7e-06     0.012      26      67 ..      22      61 ..       8      70 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.7e-06
                SEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEES CS
    AhpC-TSA 26 kpvvlffypkdwcpvCttelpalaklyeefkergvevigvsv 67
                  +++ f+++ wc +C+  +p l + +ee++  +++v  +++
  CTQ29832.1 22 GLTLVDFWAE-WCGPCKMIAPILDEIAEEYQG-KLTVAKLNI 61
                47899*****.*******************94.455555554 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.4e-05     0.018     116     183 ..      42     105 ..      37     106 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.4e-05
                    HHHHHHHHTTTT-EEEEEETTGGHHHHHHTT--GGG-SEEEEEESSSS-EEEETTSS--HHHHHHHHH CS
  Thioredoxin_6 116 aiekvakefkdkinfaladaksfkrpleylglsssdlPvivivdsashkykyppkdefspeklkeFlk 183
                    ++ ++a+e+++k+++a ++ ++++     +g++   +P++ +++  ++++ + + + +s+++lkeFl+
     CTQ29832.1  42 ILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIR--GIPTLLLFK--NGEVAATKVGALSKGQLKEFLD 105
                    578999999999999999999999999999999..999999888..8888777799999999999986 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.2e-05     0.028      25      64 ..      19      55 ..       4      68 .. 0.74
   2 ?   -0.2   0.0      0.56   7.1e+02     101     137 ..      71      97 ..      57     106 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.2e-05
                HHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTT CS
     Redoxin 25 efkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvd 64
                +  g + +v f++  +c++C+  +p l+++ae++  k  +
  CTQ29832.1 19 KADGLT-LVDFWAE-WCGPCKMIAPILDEIAEEYQGK-LT 55
                445555.9******.***************9996543.55 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.56
                 TT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCH CS
     Redoxin 101 lGlrleedaseglrtpryavidedgkvvylevepepe 137
                 +G+r         ++p+  ++ ++g v +++v++ ++
  CTQ29832.1  71 YGIR---------GIPT-LLLFKNGEVAATKVGALSK 97 
                 4433.........4444.4566899999999998774 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   9.9e-06     0.013      12     105 ..       4      85 ..       1     105 [. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.9e-06
   OST3_OST6  12 gviklndenykellkgprdysvvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppk 105
                 ++i+l+d+++++ +  + d  ++v + a+     C +C+ ++p ++ +a+ ++ +       l  ak+++d+++ +  k+g++ +P lllf+  
  CTQ29832.1   4 KIIHLTDDSFDTDVL-KADGLTLVDFWAE----WCGPCKMIAPILDEIAEEYQGK-------LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 85 
                 677777777777664.6666666666666....6****************99988.......99***************************984 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.022        28       2      40 ..      26      62 ..      25      65 .. 0.77
   2 ?    8.6   0.0    0.0012       1.5     150     190 ..      58     102 ..      55     105 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.022
                EEEEEBTTBHHHHHHHHHHHHHHHHCCTEEEEEEE-SSS CS
        DSBA  2 vdeffDvlCPyCylgkerleklaarspdvkvvlrpfela 40
                vd++ +  C+ C++ ++ l+++a+ + + k++   ++++
  CTQ29832.1 26 VDFWAE-WCGPCKMIAPILDEIAEEY-QGKLTVAKLNID 62
                566666.59*****************.666666666665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHTT-SSSSEEEE..TTC..EEEESSSSHHHHHH CS
        DSBA 150 keavrentaaaqslgvtGvPtvvv..dgk..rmvfGadrldtlad 190
                 k  +++n   a ++g++G+Pt ++  +g+   + +Ga +  +l++
  CTQ29832.1  58 KLNIDQNPGTAPKYGIRGIPTLLLfkNGEvaATKVGALSKGQLKE 102
                 5578999999************99988885555667776666665 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.9e-05       0.1       8      57 ..      31      83 ..      25     105 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.9e-05
                TT-HHHHHHHHHHHHHCCCTT..EEEEEEETTT-CCCHCCCCTT.TTEEEECT CS
      DUF836  8 pgChlCeqakekLkelkleeg..leleviDIakdeeleakYgle.ipvlaleg 57
                + C+ C+ +  +L e+++e +  l++ + +I++++    kYg + ip l+l +
  CTQ29832.1 31 EWCGPCKMIAPILDEIAEEYQgkLTVAKLNIDQNPGTAPKYGIRgIPTLLLFK 83
                56*************87777678******************975477776655 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00012      0.15      21      81 ..      25      82 ..      18      84 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
                   EEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT-.--SSEEEEE CS
  Thioredoxin_7 21 lvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanilelde.qgvPvvafl 81
                   lv+f a+wc++C+ ++  + +     + +++k  + +++++++ +     ++ +g+P+++++
     CTQ29832.1 25 LVDFWAEWCGPCKMIAPILDEI--AEE-YQGKLTVAKLNIDQNPGTA-PKYGiRGIPTLLLF 82
                   8*************98876544..556.9999999999999888866.33336789998887 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00012      0.16      48      96 ..      41      88 ..      34      98 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00012
                HHHHHHHCT-TTS-EEEEEETHHHHHHHHHCCT-TSSSEEEEEETTEEE CS
        HyaE 48 VvlpEllkaFpnalraavvadreqeealaerfgvlktPsllflrdgeyl 96
                 +l E+ ++++  l+ a ++  +q+   a ++g++  P+ll++++ge+ 
  CTQ29832.1 41 PILDEIAEEYQGKLTVAKLN-IDQNPGTAPKYGIRGIPTLLLFKNGEVA 88
                58999999999999888888.9999999*****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 859.65
//
Query:       CTQ29833.1  [L=419]
Description: transcription termination factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-32  111.3   0.0    3.1e-32  110.2   0.0    1.6  1  Rho_RNA_bind   Rho termination factor, RNA-binding domain
    7.8e-23   81.2   0.0    1.1e-22   80.7   0.0    1.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
      2e-17   62.8   0.5    2.1e-16   59.6   0.2    2.5  2  Rho_N          Rho termination factor, N-terminal domain
      6e-05   23.0   0.0    0.00011   22.2   0.0    1.3  1  NACHT          NACHT domain
      0.002   17.8   0.0     0.0046   16.6   0.0    1.6  1  OB_RNB         Ribonuclease B OB domain
     0.0025   17.4   0.1     0.0097   15.5   0.1    1.8  1  AAA_25         AAA domain
     0.0036   17.7   0.0     0.0076   16.7   0.0    1.5  1  AAA            ATPase family associated with various cellular
     0.0085   16.4   0.0      0.023   15.0   0.0    1.7  1  AAA_22         AAA domain
  ------ inclusion threshold ------
      0.086   11.4   0.0        6.7    5.1   0.0    2.1  2  Terminase_GpA  Phage terminase large subunit (GpA)
      0.097   12.0   0.0        0.2   11.0   0.0    1.4  1  FtsK_SpoIIIE   FtsK/SpoIIIE family
       0.12   11.7   0.0       0.22   10.8   0.0    1.5  1  DnaB_C         DnaB-like helicase C terminal domain
       0.14   12.4   0.1         27    5.0   0.0    2.5  2  DUF1912        Domain of unknown function (DUF1912)


Domain annotation for each model (and alignments):
>> Rho_RNA_bind  Rho termination factor, RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0   2.1e-35   3.1e-32       2      73 .]      52     125 ..      51     125 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 2.1e-35
                   EEEEEE-TTS-EEEE-G..TT---TT-EEE-CCCCCCTT--TT-EEEEEEE---SSS-SEEECEECEETTEEXX CS
  Rho_RNA_bind   2 eGiLeilpdgygFlRts..nylpgpedvYVsasqirkfgLrtGDaveGkvrppkerekynaLlrvesvngeepe 73 
                   +G+Leil+dg+gFlR+   +yl+gp+d+YVs+sqir+f+LrtGD+++Gk+rppke+e+y+aLl+v++vn ++pe
    CTQ29833.1  52 DGVLEILQDGFGFLRSAdsSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPE 125
                   6***************999****************************************************997 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   7.5e-26   1.1e-22       3     211 ..     160     363 ..     158     365 .. 0.90

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 7.5e-26
                  HHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS..S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   3 rvlDalfpivqGqrtlipgafgvGktvisqslskqsnsd..d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareasiytgitlA 97 
                  rvlD+  pi++Gqr li++  + Gkt+++q++++    +  d +  + +i er +ev+e+ + ++ g       +va+t +ep+   ++++ + i  A
   CTQ29833.1 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNhpDcVLMVLLIDERPEEVTEMQRLVK-G------EVVASTFDEPASRHVQVAEMVIEKA 250
                  9****************************999998766655667788899******999765444.3......489********************** PP

                  HHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGC.STTSHHHHHHHHHSSEEEEB- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  98 EyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspagg.DfsdpvttatlgitdgfivLd 194
                    + +++k+v++++ds++r a+A++ +  + g++  + g  a+  ++  ++   a ++ ++ Gs+ti+a+  ++ g  +++ + ++  g  +  + L+
   CTQ29833.1 251 KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNV-EEGGSLTIIATALIDTGsKMDEVIYEEFKGTGNMELHLS 346
                  ********************************986.589*******************.678*******9998876256778889999999******* PP

                  HHHHHTTBSSSBCTTTE CS
                  xxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 195 kklaqrkhfPainvlvS 211
                  +k+a++++fPai+   S
   CTQ29833.1 347 RKIAEKRVFPAIDYNRS 363
                  *************9988 PP

>> Rho_N  Rho termination factor, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.2   1.4e-19   2.1e-16       1      43 []       5      47 ..       5      47 .. 0.98
   2 ?    0.7   0.0      0.35   5.3e+02      21      31 ..     361     371 ..     347     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1.4e-19
                HHHHS-HHHHHHHHHHTT-TTGGGS-HHHHHHHHHHGGGSSSS CS
       Rho_N  1 eLkektlseLraiAkelgienysrlRKqdLIfaIlkaqaekgg 43
                eLk+ ++seL  + + +g+en++r+RKqd+IfaIlk+++++g+
  CTQ29833.1  5 ELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHSKSGE 47
                8***************************************997 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.35
                 TGGGS-HHHHH CS
       Rho_N  21 nysrlRKqdLI 31 
                 n+s+ RK +L 
  CTQ29833.1 361 NRSGTRKEELL 371
                 99*******96 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   7.3e-08   0.00011      12      96 ..     183     273 ..     180     290 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 7.3e-08
                 CHHHHHHHHHHHHCTS-SCCCC-SEEEEE..ETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE.......EEEE-STT-SS- CS
       NACHT  12 GKTtLlqklalawaegklpqgafklvFfl..slrelsrsgnarsladllfsqlpepaapvsevwavllelperlL.......lilDglDelvtd 96 
                 GKT+Llq +a+ +a ++++++   +v+++  +  e+++ ++     ++++s ++epa+++ +v ++++e ++rl+       ++lD++ +l++ 
  CTQ29833.1 183 GKTMLLQNIAQSIAYNHPDCV--LMVLLIdeRPEEVTEMQRL-VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVehkkdviILLDSITRLARA 273
                 *****************9995..4555541144455554444.8889***************9999999999999999999999***9988875 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.1e-06    0.0046       1      40 [.      53      99 ..      53     110 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.1e-06
                EEEEE-SSS-EEEEECT......TEEEEE-HHHHTT..S-TT-EEEE CS
      OB_RNB  1 GtvrahkkGFGFlipde.....gkeDifippeqmkk..amhGDrVlv 40
                G++++ ++GFGFl+  +     g +Di+++p+q+++     GD++  
  CTQ29833.1 53 GVLEILQDGFGFLRSADssylaGPDDIYVSPSQIRRfnLRTGDTISG 99
                789999*******98777***************98511446666655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   6.5e-06    0.0097      30      62 ..     168     200 ..     158     277 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.5e-06
      AAA_25  30 lpagelallaGapgtGKttlaldlalavatGkp 62 
                 + +g  +l++++p++GKt+l+ ++a ++a  +p
  CTQ29833.1 168 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200
                 568999**********************97775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.1e-06    0.0076       2      74 ..     175     274 ..     174     288 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.1e-06
                 EEESSTTSSHHHHHHHHHHHHTHE....................EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHH CS
         AAA   2 llyGppGtGKTllakavakelgve....................fleisgsellskyvgesekkirelfkeakeka.......kpsilfiDEidalaks 73 
                 l++ pp  GKT+l + +a+++  +                    + ++   e++ +++ e +++  ++ + + eka       k +i+++D i +la++
  CTQ29833.1 175 LIVAPPKAGKTMLLQNIAQSIAYNhpdcvlmvlliderpeevteMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAkrlvehkKDVIILLDSITRLARA 273
                 6889****************85444455445444444444444455555555555555555555555555543333345566346**********9987 PP

                 H CS
         AAA  74 r 74 
                  
  CTQ29833.1 274 Y 274
                 6 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.5e-05     0.023       8     103 ..     174     270 ..     169     283 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevv....fvtlpsst..sskdl..lrellralglelkaerlsseell.ealeqalraraviellii 97 
                 +++++++ +GKT+ll++++++       ++++p++v    +++   ++  + + l   + +++ +++++++   +  e++ e+  + ++++++ +++++
  CTQ29833.1 174 GLIVAPPKAGKTMLLQNIAQSI------AYNHPDCVlmvlLIDERPEEvtEMQRLvkGEVVASTFDEPASR-HVQVAEMViEKAKRLVEHKKD-VIILL 264
                 79******************97......3334444434556666666565444442334566666666666.888888887999999999999.99999 PP

      AAA_22  98 DEaqhl 103
                 D + +l
  CTQ29833.1 265 DSITRL 270
                 988777 PP

>> Terminase_GpA  Phage terminase large subunit (GpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0082        12      37      79 ..     175     217 ..     161     232 .. 0.86
   2 ?    5.1   0.0    0.0045       6.7     325     350 ..     269     293 ..     246     350 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0082
  Terminase_GpA  37 vfvkpaqvGkTelllnwigyvidndpapmlvvqptkdlarefs 79 
                     +v p + GkT ll+n+  ++  n p+ +l+v+  ++  +e++
     CTQ29833.1 175 LIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVT 217
                    5799***************************998887776665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0045
  Terminase_GpA 325 eraedlergtvPagvlvltagVDvQa 350
                    + a+  ++++vPa+++vlt gVD  a
     CTQ29833.1 269 RLARA-YNTVVPASGKVLTGGVDANA 293
                    33444.599**************874 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00013       0.2      42      90 ..     174     222 ..     159     258 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                   EEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEE.EE-TTSSSCGGGTT- CS
  FtsK_SpoIIIE  42 llvaGatgsGKStalntLilSlatthtPeeVqli.liDykgvelsaledi 90 
                   +l++  ++ GK+  l+++ +S+a+ ++P+ V ++ liD    e ++++++
    CTQ29833.1 174 GLIVAPPKAGKTMLLQNIAQSIAY-NHPDCVLMVlLIDERPEEVTEMQRL 222
                   7888899*****************.8888887761567666677777766 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.22      22      70 ..     174     225 ..     161     275 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
                 EEEEEXTTSSHHHHHHHHHHHHHHCSTSEEEEE.ESSSXHHHH..HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx..xxxxxxx RF
      DnaB_C  22 iiiAarpsmGktalalniaenaavkeklpvavf.slemsaeql..vqRllss 70 
                  +i a p  Gkt+l  nia+++a ++   v+++  ++   e++  +qRl+  
  CTQ29833.1 174 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVlLIDERPEEVteMQRLVKG 225
                 567899*****************87766555440444444554335565543 PP

>> DUF1912  Domain of unknown function (DUF1912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.022        33      10      38 ..     231     259 ..     224     274 .. 0.89
   2 ?    5.0   0.0     0.018        27      51      74 ..     392     415 ..     374     418 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHHHHHHHHHHHH------ CS
     DUF1912  10 dfeewvntqvkinelaleaskkvleedkd 38 
                  f+e  +  v++ e+ +e++k+++e  kd
  CTQ29833.1 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKD 259
                 588889999***************99887 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHT--TTS- CS
     DUF1912  51 kldaykfllgkfenykagkgfhdl 74 
                  +da +fl+ k++  k++ +f d+
  CTQ29833.1 392 EIDAMEFLINKLAMTKTNDDFFDM 415
                 78********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3118.57
//
Query:       CTQ29834.1  [L=367]
Description: UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-30  103.9  20.5    8.4e-30  103.9  20.5    2.5  3  Glycos_transf_4  Glycosyl transferase family 4
     0.0067   16.0   2.6      0.033   13.8   0.2    2.6  2  TMEM100          Transmembrane protein 100
  ------ inclusion threshold ------
      0.069   13.5   0.5      0.069   13.5   0.5    3.5  3  MgtC             MgtC family
       0.16   12.2   0.2       0.36   11.1   0.2    1.5  1  Cu               Cupiennin


Domain annotation for each model (and alignments):
>> Glycos_transf_4  Glycosyl transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.96   4.3e+03     105     105 ..      22      22 ..       2      66 .. 0.55
   2 !  103.9  20.5   1.9e-33   8.4e-30       4     157 ..      76     232 ..      73     235 .. 0.94
   3 ?   -0.2   1.7      0.19   8.6e+02      96     131 ..     299     334 ..     284     341 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.96
  Glycos_transf_4 105 l 105
                      +
       CTQ29834.1  22 F 22 
                      1 PP

  == domain 2  score: 103.9 bits;  conditional E-value: 1.9e-33
  Glycos_transf_4   4 llltillilllGflDDvlglkarlKlilqilaalililtldlslttlgllltqvlielglilavlltllvivgvtNavNliDGldGlaagvsii 97 
                      +l+++ +++l+G+lDD ++++++++ ++q+++a+i++++++l+l++lg++++   + lg  + ++ltl+++++++Na+N++DG+dGl +g+s +
       CTQ29834.1  76 YLACAGVLVLVGALDDRFDISVKIRAVIQAAIAVIMMMAGNLHLSSLGFIFGSWELVLG-PFGFFLTLFAVWAAINAFNMVDGIDGLLGGLSSV 168
                      6888999*********************************************9999999.889999**************************** PP

  Glycos_transf_4  98 ialalvvlaavdgrsellllalallgallGfllfNryp....AkvFmGDsgslflGlvlavlai 157
                      +++a +++ + dg+++l++ ++a+++a+l ++l N        kvFmGD+gs+++G+++ ++ +
       CTQ29834.1 169 SFAATGIILWFDGQYSLAMWCFAMIAAILPYILLNLGAlgrrYKVFMGDAGSTMIGFTIIWILL 232
                      ***********************************87666557****************99877 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.19
  Glycos_transf_4  96 iiialalvvlaavdgrsellllalallgallGfllf 131
                      +++a++l+++ +v++ + ++   ++l+  l++f+l+
       CTQ29834.1 299 TLAAALLALVGVVAEYTRIVPEWVMLILFLVAFFLY 334
                      233333444444444444444444444455666655 PP

>> TMEM100  Transmembrane protein 100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   7.3e-06     0.033      61     102 ..      45      87 ..       8      91 .. 0.88
   2 ?    1.6   0.2     0.043   1.9e+02     103     121 ..     338     356 ..     295     360 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.3e-06
     TMEM100  61 gvvvLvaGvvv.tavaytfnshgsvisvlglvLLsaGlvllas 102
                 g + Lv G+ v +++ +tf   +  i   +l L +aG+++l+ 
  CTQ29834.1  45 GLIPLVGGISVyAGICFTFAIADYYIPHASLYLACAGVLVLVG 87 
                 8899*****77378************************99975 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.043
     TMEM100 103 savCWkvrrrrkkerrres 121
                     Wkv r+ k+ rrr +
  CTQ29834.1 338 IKRAWKVARLVKRIRRRIR 356
                 3457*********999965 PP

>> MgtC  MgtC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.2   9.8         4   1.8e+04      60     112 ..     144     197 ..      10     206 .. 0.77
   2 ?   -2.9   0.2       1.9   8.4e+03      55      86 ..     221     251 ..     214     261 .. 0.61
   3 ?   13.5   0.5   1.5e-05     0.069      25      66 ..     293     334 ..     276     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: -5.2 bits;  conditional E-value: 4
        MgtC  60 lgagvilkekegakvkglTTaaslwvtaaiGllvgl.glyllavvatvlvllll 112
                  + ++i + +  + + gl    s    aa G+++ + g+y la+ ++++++++l
  CTQ29834.1 144 AVWAAINAFNMVDGIDGLLGGLSSVSFAATGIILWFdGQYSLAMWCFAMIAAIL 197
                 222333333344478888888888899999998887568888888888887776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.9
        MgtC  55 sgigflgagvilkekegakvkglTTaaslwvt 86 
                 ++igf    ++l++++  k++ +    +lw+ 
  CTQ29834.1 221 TMIGFTIIWILLETTQ-GKTHPISPVTALWII 251
                 4566666655553333.355555555555554 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 1.5e-05
        MgtC  25 RTfaLvalgaalfvllslelaesrvaaqvvsgigflgagvil 66 
                   f+L++l+aal++l+ + +  +r++ ++v+ i fl+a ++ 
  CTQ29834.1 293 QAFVLITLAAALLALVGVVAEYTRIVPEWVMLILFLVAFFLY 334
                 469*************999988**************987655 PP

>> Cu  Cupiennin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2     8e-05      0.36       4      17 ..      18      31 ..      16      46 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8e-05
          Cu  4 sLFKFLAKKvAKtv 17
                 LF F A KvAK++
  CTQ29834.1 18 TLFIFVARKVAKKI 31
                69**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 2812.70
//
Query:       CTQ29835.1  [L=348]
Description: Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-12   46.3   1.5    4.9e-12   46.0   0.0    2.0  2  Wzz       Chain length determinant protein
  ------ inclusion threshold ------
      0.049   13.9   0.3      0.098   12.9   0.3    1.5  1  RGS       Regulator of G protein signaling domain
      0.084   12.8   0.4       0.24   11.4   0.0    2.0  2  GNVR      G-rich domain on putative tyrosine kinase


Domain annotation for each model (and alignments):
>> Wzz  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   8.1e-16   4.9e-12       1      64 [.      15      87 ..      15     119 .. 0.74
   2 ?   -3.3   0.4       1.9   1.2e+04      15      34 ..     322     341 ..     321     343 .. 0.72

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 8.1e-16
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EEEEEEEES--CHHH....HHHHHHCC.......H CS
         Wzz  1 eeiDLieLlsvLwkrkklIilvtllfallaviyaflatpkYtataqilvpekkqv....eassltaq.......d 64
                +e+D++ L+++Lw++k +I+  ++lfa++ ++y+f+a+++++ata+   p+ +      +++++  +       d
  CTQ29835.1 15 NELDIRGLFRALWAGKGWIVGGAVLFAAIVLVYTFFARQEWSATAITDRPTVNMLggyySQQQF--LrnldikaD 87
                79*********************************************99998764544322222..122444441 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.9
                 XXXXXXXXXXXXXXXXXXXX CS
         Wzz  15 rkklIilvtllfallaviya 34 
                 r +l ++  +++al+++++a
  CTQ29835.1 322 RVFLMVMWGIVGALIGAGVA 341
                 56677777788888888876 PP

>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   1.6e-05     0.098      11      99 ..      97     221 ..      87     239 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHHTTCT.HHHHHHHHHHHHHTS..................................SHHHHHHHHHHHHHHHHTSTTSTTSS.TS-HHHH CS
         RGS  11 grslFreFlesefse.enlsFwlaveefkka..................................keqeelkkkakeIyneylapsspkel.nidkklr 73 
                   ++++eF+ +  s     +Fwl+++ +k++                                  k   e+ ++a++++++y+a +s++   +++++l+
  CTQ29835.1  97 MDEAYKEFIMQLASWdTRRDFWLQTDYYKQRqsgnaradaamlddlinniqfmpgdaaksindsvKLTAETGQDANNLLRQYVAFASQRAAgHLNDELK 195
                 56788999888777668899*****************************************9999999999999**************9999******9 PP

                 HHHHHHHCSSSTTTTTTHHHHHHHHH CS
         RGS  74 eelekrlekeqpsrklfeeaqeevfe 99 
                    ++r  + + + k  ee+ e++f+
  CTQ29835.1 196 GAWAARTVQMKAQVKRQEEVAEAIFN 221
                 99999998885555555555544443 PP

>> GNVR  G-rich domain on putative tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.3   7.8e+03       8      21 ..     208     221 ..     201     239 .. 0.47
   2 ?   11.4   0.0     4e-05      0.24      50      81 ..     311     345 ..     307     346 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.3
        GNVR   8 rLtrDvevnteiYt 21 
                 +++r  ev+++i+ 
  CTQ29835.1 208 QVKRQEEVAEAIFN 221
                 33333344444333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4e-05
        GNVR  50 pekpvk...PkkalivvlalllGlllgvalvllrr 81 
                 pe+pvk   P++ + +v+  ++G+l+g++++l rr
  CTQ29835.1 311 PEEPVKrdsPRRVFLMVMWGIVGALIGAGVALSRR 345
                 5666654449**********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2798.02
//
Query:       CTQ29836.1  [L=376]
Description: UDP-N-acetyl glucosamine-2-epimerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.4e-127  424.1   0.0   3.8e-127  423.9   0.0    1.0  1  Epimerase_2      UDP-N-acetylglucosamine 2-epimerase
    0.00041   20.8   0.0      0.001   19.6   0.0    1.8  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    0.00085   19.4   0.0     0.0021   18.1   0.0    1.7  1  Glyco_transf_4   Glycosyltransferase Family 4
  ------ inclusion threshold ------
      0.055   13.5   0.0      0.094   12.7   0.0    1.4  1  Glyco_trans_4_2  Glycosyl transferase 4-like
       0.15   11.6   0.0       0.37   10.3   0.0    1.6  1  Glycos_transf_1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Epimerase_2  UDP-N-acetylglucosamine 2-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  423.9   0.0  1.1e-130  3.8e-127       2     347 .]      22     370 ..      21     370 .. 0.97

  Alignments for each domain:
  == domain 1  score: 423.9 bits;  conditional E-value: 1.1e-130
                  HHTTS-..EEEEEEE-S--SGGGTHHHHHHTT----SEEE-..--S--HHHHHHHHHHHHHHHHHHH--SEEEEESSSHHHHHHHHHHHHTT-EEEEE CS
  Epimerase_2   2 alkaeselelqlvvtGqHldremgdtvfeeleiekpdydln..sdsqslakstgrvligleevleeekpDlvlvlGDtnetlagalaAfklripvaHv 97 
                  al++++++e +++vt+qH  rem+d+v++ ++i  pdydln  +++q+l+++t r+l+gl+ vle+ kpD+vlv+GDt++t+a++laAf++ripv+Hv
   CTQ29836.1  22 ALAKDPHFEAKVCVTAQH--REMLDQVLKLFSI-VPDYDLNimKPGQGLTEITCRILEGLKPVLESFKPDVVLVHGDTTTTMAASLAAFYQRIPVGHV 116
                  7999**************..*************.888888876888**************************************************** PP

                  T-----S-TT..SHHHHHHHHHHHT-SEEEESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHHHH...T.-HHHHHH....--SS-EEEEE--- CS
  Epimerase_2  98 eAGlRsfdltegmpeEinRhlidklsdlhfapteearenLlkegeeeerifvvGntviDalllskeeieeklk.aseilke....lkekkyvlvtlHr 190
                  eAGlR++dl++++peE nR l+++l+++hfapte++r+nLl+e+++++ri+v+GntviDal+++++++  + + ++++l++     ++kk++lvt Hr
   CTQ29836.1 117 EAGLRTGDLSSPWPEEGNRTLTGHLATYHFAPTETSRQNLLRENIADSRITVTGNTVIDALFWVRDRVLGDEAlRETLLQRypfiSHGKKMILVTGHR 214
                  *******************************************************************98777667777777999999*********** PP

                  HHHHTSHHHHHHHHHHHHHHHHH.H--EEEEE--..HHHHHHHHHHHHH-TTEEEE----HHHHHHHHHC-SEEEES-HHHHHHHHHCT--EEESSSS CS
  Epimerase_2 191 renedeperlkeilealkalake.kdvevvvpvhnnprtrkrlleeleelenvtlieplgyldflsllknaklvltdSgGiqeEapslgvpvvnlRee 287
                  re+++    +++i++al+++a++ ++v++v+pvh+np++++ ++++l +++nv+liep +yl f++l+ +a+l+ltdSgGiqeEapslg+pv+++R+ 
   CTQ29836.1 215 RESFGLG--FEQICQALAEIAHThPEVQIVYPVHLNPNVSEPVNRILGHIDNVMLIEPQDYLPFVWLMDRAWLILTDSGGIQEEAPSLGKPVLVMRDM 310
                  *****77..***************************************************************************************** PP

                  -S-THHHHTTSEEE-TT-HHHHHHHHHHHCT-..--......--TT-SS-HHHHHHHHHH CS
  Epimerase_2 288 teRpegveagtnvlvgtdkeeIvaaleklledkkelekmanaknpYgdGkaseriveile 347
                  teRpe+v+agt++lvgtd+++Iva++++lled++++++m++a+npYgdG+a++ri+++l+
   CTQ29836.1 311 TERPEAVAAGTVCLVGTDSQRIVAEVTRLLEDDAAYQAMSRAHNPYGDGEACRRILSALK 370
                  ********************************************************9986 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.8e-07     0.001      59     159 ..      74     171 ..      16     172 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.8e-07
  Glyco_trans_4_4  59 alralrrllrqrrerpdvvhahs.ptaglaarlarrrrgiplvvtlhglllrrgsgavrrlyralerrllrr.adavlvvseaeaeelralgvp 150
                       l +l+ +l  ++++pdvv +h+  t+ +aa la+   +ip+ +   gl +      + ++  + +r+l  + a   ++++e  ++ l + +++
       CTQ29836.1  74 ILEGLKPVL--ESFKPDVVLVHGdTTTTMAASLAAFYQRIPVGHVEAGLRTG---DLSSPWPEEGNRTLTGHlATYHFAPTETSRQNLLRENIA 162
                      455666678..9**********9999********9889***98877775432...2344555888888888868889***************** PP

  Glyco_trans_4_4 151 adrvvvvpn 159
                      ++r++v +n
       CTQ29836.1 163 DSRITVTGN 171
                      ******998 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.9e-07    0.0021      57     166 ..      71     173 ..      18     176 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.9e-07
  Glyco_transf_4  57 slaflrrlrrllkrekpDvvHahspaal.gaallalrrrlgiplVltvHglyekrllkarlkplsrllralerrl.lrradrviavSeatadelr 149
                     + + l  l+ +l+ +kpDvv +h+  +  +aa la+    +ip+ +   gl           + s++ ++  r l  + a   +a++e+ +++l+
      CTQ29836.1  71 TCRILEGLKPVLESFKPDVVLVHGDTTTtMAASLAAF-YQRIPVGHVEAGLR-------TGDLSSPWPEEGNRTLtGHLATYHFAPTETSRQNLL 157
                     455567789999********66654444033334444.49*****9999998.......5666777777777777688999************** PP

  Glyco_transf_4 150 erygvppekitVipnGv 166
                     +  +++ ++itV  n v
      CTQ29836.1 158 R-ENIADSRITVTGNTV 173
                     *.99999*****99876 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.6e-05     0.094      64     102 ..      75     113 ..      33     137 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.6e-05
  Glyco_trans_4_2  64 f.klkklikkikPDvvhahyakpygllgslaarlsgvipv 102
                      +  lk +++ +kPDvv +h  +   +++slaa   + ipv
       CTQ29836.1  75 LeGLKPVLESFKPDVVLVHGDTTTTMAASLAAFYQR-IPV 113
                      447899***************999******987777.776 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0001      0.37     111     168 ..     296     352 ..     291     354 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0001
                      HHHHTT--EEEET.TTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHH CS
  Glycos_transf_1 111 EAmaaglpviasn.aggpaevvkdgetGllvkpnnaealaeairklledeelrerlgen 168
                      EA ++g+pv++   +   +e v+ g   ++   ++ + +++++++lled+  +++++++
       CTQ29836.1 296 EAPSLGKPVLVMRdMTERPEAVAAGT--VCLVGTDSQRIVAEVTRLLEDDAAYQAMSRA 352
                      8999********99************..899999****************999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2962.94
//
Query:       CTQ29837.1  [L=420]
Description: UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-59  199.6   0.1    9.2e-58  194.9   0.1    2.2  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
    2.6e-27   94.9   0.0    5.2e-27   93.9   0.0    1.5  1  UDPG_MGDP_dh    UDP-glucose/GDP-mannose dehydrogenase family,
    9.8e-19   67.7   0.0    2.6e-18   66.4   0.0    1.8  1  UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family,
    5.1e-07   30.0   0.1    4.3e-06   27.0   0.1    2.4  2  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
     0.0034   17.3   0.0     0.0076   16.2   0.0    1.7  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.004   17.4   1.2      0.022   15.0   0.2    2.5  2  TrkA_N          TrkA-N domain
  ------ inclusion threshold ------
      0.014   15.1   0.6       0.11   12.2   0.1    2.7  4  ApbA            Ketopantoate reductase PanE/ApbA
      0.022   14.1   0.1       0.35   10.2   0.0    2.2  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
       0.03   14.3   0.1        4.9    7.1   0.0    2.8  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
      0.067   13.3   0.0       0.12   12.4   0.0    1.4  1  CIF             Cycle inhibiting factor (CIF)
      0.086   12.3   0.0       0.22   11.0   0.0    1.7  1  Methyltransf_4  Putative methyltransferase
       0.14   11.4   0.1       0.23   10.7   0.1    1.3  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.9   0.1   6.2e-61   9.2e-58       2     184 ..       5     188 ..       4     191 .. 0.96
   2 ?    2.3   0.0      0.07     1e+02      34      84 ..     347     394 ..     345     405 .. 0.84

  Alignments for each domain:
  == domain 1  score: 194.9 bits;  conditional E-value: 6.2e-61
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-----B-TTTTCB- CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDideekvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaVgTPskkkgkaaD 96 
                     +isviGlGY+Gl+taa++a++++ v+gvD+++++v+++n+g+i+i+ep+L+++vk+ave    ++ +++++++ ead+ +iaV+TP+k+  +++D
      CTQ29837.1   5 TISVIGLGYIGLPTAAAFASRQKRVVGVDVNQHAVETINRGEIHIVEPDLASVVKTAVE----QGYLSATTTPVEADAYLIAVPTPFKD-RHEPD 94 
                     79********************************************************5....777788889999**************.9999* PP

                     THHHHHHHHHHHHHHHCEEEEEE-S---TTHHHHCHHHHHHHHCSS-.......TTCEEEEE------TTSHHHHHHS-S-EEEEESSCHHHHHH CS
  UDPG_MGDP_dh_N  97 lkyvesaarsiaealkkgkvvvvkSTvpvgtaeelvkkileeaskkk.......gvdfdvvsnPEflregsavkdllnpdrvviGveekkaeaal 184
                     + +vesaa+sia++lkkg++v+++ST pvg++e+++++++e++++ +       ++d++++++PE++++g+++ +l+++drv++G+++ +++ ++
      CTQ29837.1  95 MVFVESAAKSIAPTLKKGSLVILESTSPVGSTEQMAEWLAEMRPDLSfpqqvgeAADVNIAYCPERVLPGQVMVELIKNDRVIGGMSPVCSA-RA 188
                     *******************************************9998999999999********************************9998.44 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.07
                     HHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HHHHHHC-SEEEE-- CS
  UDPG_MGDP_dh_N  34 ekvdklnsgkipiyepgLeelvkkavesgrlsfttdvekaveeadvifiaV 84 
                     ++++ ++sg  +++ep+++ l kk      l     +e a+++adv+++ V
      CTQ29837.1 347 AQIARWHSGTTQVVEPNIHALPKKLD---GLCTLAPLEAALASADVLVMLV 394
                     57999************999998877...6888888888888888888776 PP

>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   3.5e-30   5.2e-27       1      93 [.     206     293 ..     206     294 .. 0.97

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 3.5e-30
  UDPG_MGDP_dh   1 etAEliKlaaNaflatkIsfiNelanlcealgidveeVieavgldprigpkflkpglGvGGsclpkDvkaLvalaeelgleaelleavrevNe 93 
                   +tAE++Kl++N+f++++I+f+Nel+ +c   gi+v+e+i+ ++ +pr   ++l+pg+GvGG+c+ +D++++va+  +   +a+l++++revN+
    CTQ29837.1 206 RTAEMCKLTENSFRDVNIAFANELSLICADQGINVWELIRLANRHPR--VNILQPGPGVGGHCIAVDPWFIVAQNPQ---QARLIRTAREVND 293
                   69*********************************************..5**********************99988...6***********8 PP

>> UDPG_MGDP_dh_C  UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   1.7e-21   2.6e-18       1     103 [.     324     419 ..     324     420 .] 0.92

  Alignments for each domain:
  == domain 1  score: 66.4 bits;  conditional E-value: 1.7e-21
                     EEE-SSSSTT-S--TT-HHHHHHHHHHHCTS.EEEEE-SSTHHCCCCHHGGBTCCEEES-CHHHHTT-SEEEE-S--GGGGGS-HHHHHHCCSS- CS
  UDPG_MGDP_dh_C   1 ailGlafKkdtdDlReSpaldiieeLleega.evkiyDPkvkeeaveaeleekgvevvdsleealkgadaiviltehdefkeldlaklkelmkpa 94 
                     a++GlafK+++dDlReSpa++i++++++ +    ++++P++ + +++     +g+ ++++le al++ad++v+l++h++fk ++     + + +a
      CTQ29837.1 324 ACFGLAFKPNIDDLRESPAMEIAAQIARWHSgTTQVVEPNIHALPKKL----DGLCTLAPLEAALASADVLVMLVDHNQFKAVSG----DSVTQA 410
                     799*************************976369***********987....7999999***********************865....45588* PP

                     EEEESSS-C CS
  UDPG_MGDP_dh_C  95 vvfDgrnvl 103
                     +++D+++v+
      CTQ29837.1 411 FIVDTKGVW 419
                     ******997 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   2.8e-09   4.3e-06       1     106 [.       5     135 ..       5     140 .. 0.73
   2 ?   -3.0   0.0       4.7     7e+03      47      68 ..     378     398 ..     362     409 .. 0.67

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.8e-09
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT........EEE-SSHHHHHHHC...............SEEEE-SS....SHHHH CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg........akaaesieelvasl...............dvvitmvk....agkav 69 
                    +i +iGlG +G + a  +++++ +v+++++++ +ve++   +        a       ++v+++               d+ ++ v+    + ++ 
     CTQ29837.1   5 TISVIGLGYIGLPTAAAFASRQKRVVGVDVNQHAVETINRGEihivepdlA-------SVVKTAveqgylsatttpveaDAYLIAVPtpfkDRHEP 93 
                    589*********************************999998655554440.......44444444455644455555544444444111144444 PP

                    HHHHHS.....HCCC--TT-EEEE-S---HHHHHHHHHHHHH CS
  NAD_binding_2  70 devieg.....llealkkgdilidgstsspedtrelakelke 106
                    d v  +     ++++lkkg+++i  sts + +t+++a+ l+e
     CTQ29837.1  94 DMVFVEsaaksIAPTLKKGSLVILESTSPVGSTEQMAEWLAE 135
                    44444477777**************************98887 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.7
                    SSHHHHHHHCSEEEE-SSSHHH CS
  NAD_binding_2  47 esieelvasldvvitmvkagka 68 
                    + +e+++as+dv +++v + ++
     CTQ29837.1 378 APLEAALASADVLVMLVDH-NQ 398
                    4556666777766665554.34 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.1e-06    0.0076       1      39 [.       5      43 ..       5     102 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.1e-06
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekal 39
                ++ viG G +G   aa+fas+  +Vv vd++++a+e+ +
  CTQ29837.1  5 TISVIGLGYIGLPTAAAFASRQKRVVGVDVNQHAVETIN 43
                589****************************99998754 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   1.5e-05     0.022       2      49 ..       7      54 ..       6      62 .. 0.90
   2 ?   -0.4   0.0       0.9   1.3e+03      57      77 ..     381     401 ..     378     410 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-05
                EEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-T CS
      TrkA_N  2 iiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgda 49
                 +iGlG +G   a  + +++k+vv++d ++ +ve++ + ++++v  d 
  CTQ29837.1  7 SVIGLGYIGLPTAAAFASRQKRVVGVDVNQHAVETINRGEIHIVEPDL 54
                59****************8889**************999999998775 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.9
                 HTTGGGESEEEE-SSSHHHHH CS
      TrkA_N  57 eagiekadaviaatgddeani 77 
                 ea +++ad+++ +++++++++
  CTQ29837.1 381 EAALASADVLVMLVDHNQFKA 401
                 78999******9999988765 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   7.2e-05      0.11       1      73 [.       6      97 ..       6     138 .. 0.71
   2 ?   -0.9   0.0      0.75   1.1e+03     111     133 ..     167     189 ..     158     204 .. 0.81
   3 ?   -3.6   0.0       5.2   7.7e+03      62      79 ..     289     306 ..     272     319 .. 0.66
   4 ?   -3.6   0.0       5.3   7.9e+03      15      34 ..     382     400 ..     373     405 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.2e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETT...CEEEEEECEEECCH...............SCCCCS-ESEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseg...geeilrppealsae...............ekselepidlvi 73
                i ++G+G iG   aa  a     v+ ++ ++  +e++++  +++ +++     +++ ++  lsa+               + ++ ++ d+v+
  CTQ29837.1  6 ISVIGLGYIGLPTAAAFASRQKRVVGVDVNQhAVETINRGEIHIVEPDlasVVKTAVEQGYLSATttpveadayliavptPFKDRHEPDMVF 97
                789****************9999********99999************65544444444444444444444444444444444444444444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.75
                 HTTTSTTSEEEEEEEE-EEEEEE CS
        ApbA 111 lrealpkprvlggvtthgatreg 133
                 + e ++++rv+gg+++++++r +
  CTQ29837.1 167 MVELIKNDRVIGGMSPVCSARAS 189
                 66778899********8887765 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 5.2
                 SCCCCS-ESEEEE-SSGG CS
        ApbA  62 ekselepidlvivtvKay 79 
                 ++ ++++ ++vi  vKa+
  CTQ29837.1 289 REVNDHKPEWVIEQVKAQ 306
                 445777778888777775 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 5.3
                 HHHHHHTHCEEEE-SCHHHH CS
        ApbA  15 akLakagadvtlilrsrrle 34 
                 a La a   v l+++++ ++
  CTQ29837.1 382 AALASADVLVMLVDHNQ-FK 400
                 34555555566666655.44 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00024      0.35      37      82 ..       4      49 ..       1      61 [. 0.82
   2 ?    1.5   0.0      0.11   1.6e+02      79     102 ..     374     397 ..     345     400 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00024
                  SEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEE CS
  2-Hacid_dh_C 37 ktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvel 82
                  +t+ +iGlG IG  +a  +++ + +v+++d+++++ e+ ++ +++ 
    CTQ29837.1  4 STISVIGLGYIGLPTAAAFASRQKRVVGVDVNQHAVETINRGEIHI 49
                  799*****************************99877555544444 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
                   TCEECSHHHHHHH-SEEEE-S--S CS
  2-Hacid_dh_C  79 gvelvsleellaesDivslhlplt 102
                    ++l+ le++la++D++++ +  +
    CTQ29837.1 374 LCTLAPLEAALASADVLVMLVDHN 397
                   458899************998765 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0032       4.9       2      80 ..       6      86 ..       5     122 .. 0.74
   2 ?    4.1   0.0     0.027        40      56      87 ..     373     404 ..     354     419 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0032
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEE..ES-HHHHHTT--EEEE---HH CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlva..ttdlaealkgadiivlvvPsq 80
                    i+v+G G  G   A+++a++ ++v+    +++ +e+in+ + +    +  ++ ++ v   +   +++  +ad ++++vP+ 
      CTQ29837.1  6 ISVIGLGYIGLPTAAAFASRQKRVVGVDVNQHAVETINRGEIHIVEPDLASVVKTAVEqgYLSATTTPVEADAYLIAVPTP 86
                    99************************************8766544322222222222201344455555677777777765 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.027
                     TEEEES-HHHHHTT--EEEE---HHHHHHHHH CS
  NAD_Gly3P_dh_N  56 nlvattdlaealkgadiivlvvPsqalrevlk 87 
                      l+  + l++al+ ad++v+ v ++ ++ v  
      CTQ29837.1 373 GLCTLAPLEAALASADVLVMLVDHNQFKAVSG 404
                     467778899****************9998864 PP

>> CIF  Cycle inhibiting factor (CIF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   8.3e-05      0.12      24      65 ..     179     220 ..     165     266 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.3e-05
                 ---B-HHHHHHHHHHHHH-SSS---CCCCHHHS-ECCCHHHH CS
         CIF  24 ltepvcglsaqnifklmtekevavdpveieqtgklentefae 65 
                  ++pvc   a +++k++ e+e  v     +   kl +++f +
  CTQ29837.1 179 GMSPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRD 220
                 589************************************975 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00014      0.22       8     118 ..       9     120 ..       4     147 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
                     ET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHC...TTSSEEEEES-CCCHHHHCS-TTSEEEEEEES-----SGGGGGGSTTSHHH CS
  Methyltransf_4   8 iGcGkGeflvalAkknPdknflGiEirvkvvakvlkkieal...elkNlrilrgdalkvllelledgslekifilFPDPwfKkrhhKrRllqpel 99 
                     iG G+ ++  a A +  +k ++G++++++ v+++++   +    +l  +  +  + + +l+    + + +   i  P P fK rh+   ++ +  
      CTQ29837.1   9 IGLGYIGLPTAAAFASRQKRVVGVDVNQHAVETINRGEIHIvepDLASVVKTAVE-QGYLSATTTPVEADAYLIAVPTP-FKDRHEPDMVFVESA 101
                     8999999999************************985444422255555555555.689********************.69************* PP

                     HHHHHHHEEEEEEEEEEES CS
  Methyltransf_4 100 lkelarvLkkgGvlelaTD 118
                      k +a +Lkkg ++ l + 
      CTQ29837.1 102 AKSIAPTLKKGSLVILEST 120
                     ************9998765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00015      0.23     145     181 ..       6      42 ..       3      72 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                  EEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 145 ivvvGgGyiGvElAaalaklgkevtlveardrllral 181
                  i v+G GyiG+ +Aaa+a+ +k+v+ v+ +++ +++ 
   CTQ29837.1   6 ISVIGLGYIGLPTAAAFASRQKRVVGVDVNQHAVETI 42 
                  78*********************99999998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3062.18
//
Query:       CTQ29838.1  [L=355]
Description: dTDP-D-glucose-4,6-dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-98  329.5   0.0    2.9e-98  329.3   0.0    1.0  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    5.9e-75  251.8   0.0    7.1e-75  251.6   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    1.3e-17   63.9   0.0    1.9e-17   63.4   0.0    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    1.1e-14   54.1   0.0    1.8e-14   53.5   0.0    1.3  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    4.9e-14   52.1   0.0    1.4e-13   50.7   0.0    1.5  1  RmlD_sub_bind    RmlD substrate binding domain
      2e-12   46.8   0.0    2.1e-08   33.7   0.0    2.2  2  NAD_binding_4    Male sterility protein
    2.4e-06   27.8   0.1    3.9e-06   27.1   0.1    1.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    4.7e-06   26.2   0.3     0.0018   17.8   0.1    2.3  2  adh_short        short chain dehydrogenase
    1.4e-05   25.1   0.1    0.00011   22.2   0.1    2.1  2  KR               KR domain
  ------ inclusion threshold ------
      0.024   14.5   0.2        1.5    8.8   0.0    2.9  3  MarR_2           MarR family


Domain annotation for each model (and alignments):
>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.3   0.0  1.6e-101   2.9e-98       1     332 []       5     327 ..       5     327 .. 0.89

  Alignments for each domain:
  == domain 1  score: 329.3 bits;  conditional E-value: 1.6e-101
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG+aGfiGs +++ +++   + +++   ++++++g++ +la       + ++ + ++D++D+++l+r+++++qpd+v++LAA+shVd+s++ P+
     CTQ29838.1   5 LVTGGAGFIGSAVVREIIQHTADRVVV--VDKLTYAGNLMSLAPVA---QDARFAFEQVDICDRAELDRIFRQHQPDTVMHLAAESHVDRSIDGPA 95 
                    9*****************997655443..35666677777776433...3569******************************************* PP

                    HHHHHHTHHHHHHHHHHHHCT........TTSEEEEEEEGGGG-S-S..SSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalgle......kkvrfyqaStsEvYGkvq..evpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhe 184
                    +++e+n++Gt++LLea+r+ + +      + +rf+++St+EvYG++   +  +tEttp+ P sPY+a+K+++d++v+++ ++ygl++++++++n++
     CTQ29838.1  96 AFIETNIVGTYTLLEAARSWWNTlataqkSAFRFHHISTDEVYGDLHgsDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNY 191
                    ******************9865333333378***************7557889******************************************* PP

                    STTS-TTSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH....... CS
  GDP_Man_Dehyd 185 sprrgetfvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegkgeeev 280
                    +p+   +f++++i++++ ++++gk + +++Gn++++Rdw++v+D+++a+ l+  +++p       get+++++++e++++e+++ti+      ee 
     CTQ29838.1 192 GPY---HFPEKLIPLTILNALAGK-PLPVYGNGQQIRDWLYVEDHARALYLVATRGEP-------GETYNIGGHNERKNIEVVETICQLL---EEL 273
                    ***...7****************9.9999***************************97.......*********************9864...455 PP

                    .....TTGGCCC..EECGG--SS--SB--B-THHHHHHH----SS-HHHHHHHH CS
  GDP_Man_Dehyd 281 grakesgkvvve..vdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvrem 332
                    + +k +g  + +  + ++ +rpg++ ++++dask+ +eLgW+p  +f++++r++
     CTQ29838.1 274 APDKPQGVAHYRdlIAFVADRPGHDLRYAIDASKIARELGWTPAETFTSGMRKT 327
                    5555555544433399**********************************9986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.6   0.0     4e-78   7.1e-75       1     241 []       4     252 ..       4     252 .. 0.97

  Alignments for each domain:
  == domain 1  score: 251.6 bits;  conditional E-value: 4e-78
                 EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHC......EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHT CS
   Epimerase   1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledl......elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknl 92 
                 ilVtG++GfiGsa+v+++ +++ + v+++d+l++a+n  +l+ +       + ++d++dr++l+r+f+++qpd+v+hlAa+++v++s++ pa+fie+n+
  CTQ29838.1   4 ILVTGGAGFIGSAVVREIIQHTADrVVVVDKLTYAGNLMSLAPVaqdarfAFEQVDICDRAELDRIFRQHQPDTVMHLAAESHVDRSIDGPAAFIETNI 102
                 8*********************888************************************************************************** PP

                 HHHHHHHHHHH.........HHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTST CS
   Epimerase  93 qgtlnlleaar.........kagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngegev 182
                 +gt++lleaar         ++ + r++++s++evYG+ + + ++  t+t+p++p+spY+a+K+ +++lv+a+ ++ygl+++i++++n+yGp+   +++
  CTQ29838.1 103 VGTYTLLEAARswwntlataQKSAFRFHHISTDEVYGDLHGS-DDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPY---HFP 197
                 ***************9998755666****************7.77788888******************************************...99* PP

                 TSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 183 srvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 +++ip  i ++l+gk ++ ++g+g++ Rd+lyveD+a+a++lv+++   g++ge+yniG
  CTQ29838.1 198 EKLIPLTILNALAGK-PLPVYGNGQQIRDWLYVEDHARALYLVATR---GEPGETYNIG 252
                 ***************.******************************...999******9 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0     1e-20   1.9e-17       1     116 [.       4     113 ..       4     135 .. 0.92

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 1e-20
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      +lvtG++G iGs++vr+i+++++ +++++++  ++   ++      +++ ++ +e      d+ d+++l+++++++++d+v+h AA  hV    
       CTQ29838.1   4 ILVTGGAGFIGSAVVREIIQHTADRVVVVDKLTYAGNLMSLAP--VAQDARFAFE----QVDICDRAELDRIFRQHQPDTVMHLAAESHVDRSI 91 
                      89******************************99999888764..4566667666....78********************************* PP

                      HSHHHHHHHHHHHHHHHHHHHH CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaai 116
                        p+  i+tN++gt +++eaa 
       CTQ29838.1  92 DGPAAFIETNIVGTYTLLEAAR 113
                      *******************997 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   9.8e-18   1.8e-14       1     227 [.       5     238 ..       5     250 .. 0.79

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 9.8e-18
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk...viegDvtdkdkleealegv..dvvihlaslvdvag.kltedeimkvnv 93 
                 +vtGgaGF+G+a+v+e+++   +  v v+D+ +    l +l  v  +    + ++D++d ++l++  ++   d v+hla+ + v    +    + + n+
  CTQ29838.1   5 LVTGGAGFIGSAVVREIIQHT-ADRVVVVDKLTYAGNLMSLAPVAQDArfaFEQVDICDRAELDRIFRQHqpDTVMHLAAESHVDRsIDGPAAFIETNI 102
                 69*****************99.6999999976666655555555555558899*************98653389*********98846678899***** PP

   3Beta_HSD  94 kGTrnvleacv.........kagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlkngg.rlyTcaLRpagiy 182
                  GT ++lea++         +++  ++ + S+ ev g+ + ++++    E+++y   ++++y+ sKa +++lv +        g  +l+T +   +  y
  CTQ29838.1 103 VGTYTLLEAARswwntlataQKSAFRFHHISTDEVYGDLHGSDDFF--TETTPYA--PSSPYSASKASSDHLVRAWLR---TYGLpTLITNC---SNNY 191
                 ********986333333322567778999*********99999999..7888875..789*************86544...33323666655...6778 PP

   3Beta_HSD 183 Gegd..kllvpllkqlaklglalfkigdeevlsdrvYvgNvawahil 227
                 G+++  ++l pl    a  g+ l  +g+ +++ d+ Yv+  a a  l
  CTQ29838.1 192 GPYHfpEKLIPLTILNALAGKPLPVYGNGQQIRDWLYVEDHARALYL 238
                 8875435666776666677889*****************99988655 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   7.6e-17   1.4e-13       2     139 ..       3     174 ..       1     195 [. 0.84

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 7.6e-17
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT......................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre......................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaay 75 
                    +ilvtG+ G +Gs++++++ ++ ++ + +  +                      ++d+ d++++++++++++pd v+++AA   vD+  + ++a  
     CTQ29838.1   3 TILVTGGAGFIGSAVVREIIQHTADRVVVVDKltyagnlmslapvaqdarfafeQVDICDRAELDRIFRQHQPDTVMHLAAESHVDRSIDGPAAFI 98 
                    59*************999988777666554445999************************************************************ PP

                    HHHTHHHHHHHHHHH..........HCT-EEEEEEEGGGS-S-..TTS-B-TTS----SSHHHHHHHHHHHHHHHH CS
  RmlD_sub_bind  76 avnaeavealAeaaa..........avgalLihvStDyVFdGe..kkrpYeeddetsPlnvYGrtKlaGEqavlaa 139
                    + n  ++ +l eaa+          +    + h+StD V+      ++ ++e+ + +P + Y ++K+   + v+a 
     CTQ29838.1  99 ETNIVGTYTLLEAARswwntlataqKSAFRFHHISTDEVYGDLhgSDDFFTETTPYAPSSPYSASKASSDHLVRAW 174
                    *********99887611111111114455678********655545667*********************999984 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   9.5e-05      0.17       1      27 [.       6      31 ..       6      36 .. 0.89
   2 !   33.7   0.0   1.1e-11   2.1e-08      86     205 ..      73     189 ..      62     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.5e-05
                   EE-TTSHHHHHHHHHHHHHS-.TEEEE CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyl 27
                   +TG+ GF+G+ +++++++ t++ ++++
     CTQ29838.1  6 VTGGAGFIGSAVVREIIQHTAD-RVVV 31
                   7****************99998.6655 PP

  == domain 2  score: 33.7 bits;  conditional E-value: 1.1e-11
                    HH--EEEE--SS-S.STTSSE...EHHHHHHHHHHHHHHHT........SSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETT CS
  NAD_binding_4  86 eevdviihsaAtvnfdepyke...llrvNveGtrevlelak........klkklkvllhvSTayvngeregeveekvyeegekeekldederaklk 170
                    ++ d ++h aA  ++d++++    ++++N+ Gt  +le a+        + k+   ++h+ST  v+g+ +g               +d  ++++  
     CTQ29838.1  73 HQPDTVMHLAAESHVDRSIDGpaaFIETNIVGTYTLLEAARswwntlatAQKSAFRFHHISTDEVYGDLHGS--------------DDFFTETTPY 154
                    56799************998655589***************999999765555579******8888888864..............7889999999 PP

                    TCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE-E CS
  NAD_binding_4 171 glpntYeqsKalaEklvrearrrsglpvvivRpsi 205
                      +  Y+ sKa +++lvr++ r  glp++i  +s+
     CTQ29838.1 155 APSSPYSASKASSDHLVRAWLRTYGLPTLITNCSN 189
                    ******************************99886 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   2.2e-09   3.9e-06       3      78 ..       6      83 ..       4      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.2e-09
                     EE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH...TTTCEEEEE--TTTHHHHHHHHHTTS..SEEEE-SS CS
  Sacchrp_dh_NADP  3 iiGa.GsvGqavaellarhfdvdaeitvadrskeklealaaka...lgvrfeaialdaenyeavLaallkeg..dlvvnlsp 78
                     + G+ G++G+av++++ +h     +++v+d+     + +   a   +  rf ++++d+ ++++ L+++ +++  d v++l+ 
       CTQ29838.1  6 VTGGaGFIGSAVVREIIQHTAD--RVVVVDKLTYAGNLMSL-ApvaQDARFAFEQVDICDRAE-LDRIFRQHqpDTVMHLAA 83
                     55555***************98..******96665433322.2455*****************.***************986 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1     1e-06    0.0018       2      71 ..       3      73 ..       2      83 .. 0.84
   2 !    6.2   0.0    0.0036       6.5     142     165 ..     153     176 ..     149     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1e-06
                EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHH CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealveka 71
                ++lvtG+++ IG a+++e+++  a+ vv vd+   + + +     ++ a++ + qvD+ dr+e+++++++ 
  CTQ29838.1  3 TILVTGGAGFIGSAVVREIIQHTADRVVvVDKLTYAGNLMSLAPVAQDARFAFEQVDICDRAELDRIFRQH 73
                89********************9976664777777665555555556999***************999875 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0036
                 B-TTBHHHHHHHHHHHHHHHHHHH CS
   adh_short 142 pvagvaaYsAsKaavagltrslak 165
                 p+a  ++YsAsKa  ++l+r++ +
  CTQ29838.1 153 PYAPSSPYSASKASSDHLVRAWLR 176
                 788899*************99865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   6.1e-08   0.00011       2      78 ..       3      76 ..       2      91 .. 0.82
   2 ?    0.2   0.0      0.34   6.1e+02      13      39 ..     220     247 ..     218     273 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 6.1e-08
                EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHH CS
          KR  2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikae 78
                t l+tGG+G +G +++r ++++ a ++v++ +   a + ++  +a   a++a+  + ++D+ d++++ +++++ + +
  CTQ29838.1  3 TILVTGGAGFIGSAVVREIIQHTADRVVVVDKLTYAGNLMS--LAP-VAQDARFAFEQVDICDRAELDRIFRQHQPD 76
                679***************************99944333333..444.45699******************9998755 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.34
                 HHHHHHHHH.HHHS-EEEEE-SS..--H CS
          KR  13 Glelarwla.ekgarhlvllsRsaaade 39 
                 G+++ +wl+ e++ar l l++ ++++ e
  CTQ29838.1 220 GQQIRDWLYvEDHARALYLVATRGEPGE 247
                 8899999964788*******99974443 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.082   1.5e+02      19      36 ..      74      90 ..      54      90 .. 0.83
   2 ?   -3.7   0.0       6.3   1.1e+04       8      19 ..     233     244 ..     232     257 .. 0.71
   3 ?    8.8   0.0   0.00081       1.5       8      36 ..     285     317 ..     282     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.082
                TSEEEHHHHHHHHTSSHH CS
      MarR_2 19 grdltvgelarrlglsks 36
                 +d tv  la++ ++++s
  CTQ29838.1 74 QPD-TVMHLAAESHVDRS 90
                334.************97 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.3
                 HHHHHHHHCTTT CS
      MarR_2   8 arvLaaLgrrpg 19 
                 ar+L+ ++ r++
  CTQ29838.1 233 ARALYLVATRGE 244
                 666766666665 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00081
                 HHHHHHHHCTTTS....EEEHHHHHHHHTSSHH CS
      MarR_2   8 arvLaaLgrrpgr....dltvgelarrlglsks 36 
                 ++++a++++rpg      + ++ +ar+lg +++
  CTQ29838.1 285 RDLIAFVADRPGHdlryAIDASKIARELGWTPA 317
                 799**********5555559*********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2595.20
//
Query:       CTQ29839.1  [L=293]
Description: dTDP-glucose pyrophosphorylase (glucose-1-phosphate thymidylyltransferase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-69  234.5   0.0    1.6e-69  234.2   0.0    1.0  1  NTP_transferase  Nucleotidyl transferase
    1.6e-10   41.6   0.0    2.2e-10   41.1   0.0    1.2  1  NTP_transf_3     MobA-like NTP transferase domain
    0.00084   19.1   0.0     0.0012   18.6   0.0    1.2  1  IspD             2-C-methyl-D-erythritol 4-phosphate cytidyly


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.2   0.0   2.7e-73   1.6e-69       1     246 [.       2     238 ..       2     240 .. 0.98

  Alignments for each domain:
  == domain 1  score: 234.2 bits;  conditional E-value: 2.7e-73
                      EEEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTH CS
  NTP_transferase   1 kavILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaa 94 
                      k++ILaGGsGtRL+P+tr ++k+l+p+++k ++i+++ls l+ +gi+ei++++t+++   +++ l++gs+fg+ + +a++p ++g+A+A+++++
       CTQ29839.1   2 KGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPDDLRDFQRLLGDGSEFGIALHYAVQPTPDGLAQAFIIGE 94 
                      79****************************.*************************************************************** PP

                      HHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTSBEEEEECS-SSHSHCSEECCSEEEEETTHHH CS
  NTP_transferase  95 elledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGvieadeegrverfvEKPkeakaselassGiYvfnsevll 188
                       +l+ e     +lvLg+++++++ ++  +++ +++ +   +t++ ++v +++++Gv+e+d+++r+ +++EKPk++k s++a++G+Y+++ +v +
       CTQ29839.1  95 AFLNGEPA---CLVLGDNIFFGQSFSPKLRSVAARTE--GATIFGYQVMDPERFGVVEFDDNFRALSLEEKPKQPK-SNWAVTGLYFYDGKVTE 182
                      *****996...**************************..9************************************.***************** PP

                      HHHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHHHHHHH CS
  NTP_transferase 189 flakdleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldslleanekla 246
                      ++ k +++++rge eit+i++ +le+g   +++l ++++ W D+Gt+dsl+ea+++++
       CTQ29839.1 183 YA-KRVKPSERGELEITSINQMYLEDGALTVELLGRGFA-WLDTGTHDSLIEASMFVQ 238
                      *9.88*********************************6.**************9986 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   3.7e-14   2.2e-10       1     119 [.       3     132 ..       3     162 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 3.7e-14
                   EEEEEESS-TTT.....TTTHHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHCHHHH......HHTTCT..S-EEE-TTSS-SHHHHHHHHHHHH. CS
  NTP_transf_3   1 aviLAGGrSsRm.....ggdKallplggkpllervldalraagvdevvvvggdeevla......alarlg..vrvvededpgkgplaslaaalraaa 84 
                   ++iLAGG ++R+     g  K+llp+ +kp++ + l  l  ag++e+++++ ++++++      +  ++g  +++++++    g ++++  + + + 
    CTQ29839.1   3 GIILAGGSGTRLhpitrGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPDDLRDfqrllgDGSEFGiaLHYAVQPT-PDGLAQAFIIGEAFL- 97 
                   79**********6665444********************************99987764433333344453355666664.47**********999. PP

                   SSSCEEEEETT-TT--HHHHHHHHHCHHHHTSSEE CS
  NTP_transf_3  85 dadavlvlacDmPlltpelverllaaaaasgadvv 119
                   + +++ ++++D +++ +++  +l+  aa+++++++
    CTQ29839.1  98 NGEPACLVLGDNIFFGQSFSPKLRSVAARTEGATI 132
                   899999999**********9999999987776554 PP

>> IspD  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.1e-07    0.0012       4      65 ..       4      67 ..       1      75 [. 0.89

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.1e-07
                EEECTTSSCTT-...SSS-GGGSEETTEEHHHHHHHHHHCTTTEEEEEEEE-GGGHHHHHHHHGG CS
        IspD  4 vipAAGsGkRmk...aglpKqflelkgqtllehtvdallaskavdkivvvvseddteefeqllld 65
                +i A GsG+R++    g+ Kq+l + +++++   +++l+    + +i+++ ++dd   f+ ll+d
  CTQ29839.1  4 IILAGGSGTRLHpitRGVSKQLLPIYDKPMIYYPLSVLML-AGIREILIITTPDDLRDFQRLLGD 67
                899*******853338********************9887.78*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2221.66
//
Query:       CTQ29840.1  [L=224]
Description: TDP-fucosamine acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0028   17.9   0.2     0.0051   17.0   0.2    1.6  1  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   2.8e-07    0.0051      74     112 ..     170     208 ..     105     210 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.8e-07
                     TSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHH CS
  Acetyltransf_1  74 gkGlGsaLlealeerareegikkivlaveedndaairlY 112
                     g+G+G +L++a+  +a ++g+  + +a+++ n+aa + Y
      CTQ29840.1 170 GRGAGAQLMQAARYWAASRGLSTLRVATQMGNTAALKRY 208
                     9**********************9999*******98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1794.89
//
Query:       CTQ29841.1  [L=379]
Description: TDP-4-oxo-6-deoxy-D-glucose transaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-85  285.5   0.0    8.3e-85  285.2   0.0    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    2.3e-09   36.9   0.1    4.9e-09   35.8   0.0    1.4  1  Aminotran_1_2    Aminotransferase class I and II
    6.4e-06   25.4   0.0    9.8e-06   24.8   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
    0.00014   20.7   0.0    0.00034   19.5   0.0    1.6  1  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain
    0.00042   19.7   0.1    0.00082   18.7   0.1    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.013   14.1   0.1       0.02   13.4   0.1    1.3  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
       0.15   11.7   0.0       0.23   11.1   0.0    1.2  1  GCD14            tRNA methyltransferase complex GCD14 subunit


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.2   0.0   3.3e-88   8.3e-85       6     360 ..      16     374 ..      13     375 .. 0.92

  Alignments for each domain:
  == domain 1  score: 285.2 bits;  conditional E-value: 3.3e-88
                      HHHHHHHHHTSS-SSS.SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSS CS
  DegT_DnrJ_EryC1   6 eleaveevlksgwlts.gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtyn 98 
                      el++++ +++sg+l   g ++++  + + +  g++ a+ + s+ta+l++a   l+++pgdeVI+ps+tFv+tana +  gak vfvD+ +dt+n
       CTQ29841.1  16 ELDYMQSAMNSGKLCGdGGFTRRCQQWMEQRFGTAKALLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRRDTMN 109
                      67889999****88888***************************************************************************** PP

                      B-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS.-SSS-EEEEESTHHHH CS
  DegT_DnrJ_EryC1  99 idpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnl.ttGeGGavvtndeela 191
                      id   ieaait +t+aI+pVh++G +++md + aia+k++l v+eDaA+++ +tykg+ +G++g +++fSF++tKn  + GeGGa + nd  l 
       CTQ29841.1 110 IDETLIEAAITDKTRAIVPVHYAGVACEMDTIMAIADKYNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYtAGGEGGATLINDRTLV 203
                      *****************************************************************************8899************* PP

                      HHHHHHHBTTCECCTCSSCECCS......S---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSS..SEEESC CS
  DegT_DnrJ_EryC1 192 ekarvlrnhGlkrkaekryvgev......elGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketk..khawhl 277
                      e+a+++r +G +r++   ++g v      ++G++y ++++qAA + aqLe  ++++++R ++++ y ++L  l    ++++p+  +   ++ h 
       CTQ29841.1 204 ERAEIIREKGTNRSQ--FFRGLVdkytwrDIGSSYLMSDLQAAYLWAQLEAAERINQQRLALWQNYYDALLPLARAGRIELPTVPAdcGQNAHM 295
                      **********99744..4444444489999**************************************99888877777777777743489999 PP

                      EEEEEHCCHHHCHHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHHHH CS
  DegT_DnrJ_EryC1 278 yavlveeeaevkrdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVveal 360
                      + + +++    +r++l++ lke++i +  hy +plh+ p+ ++  +e +g+   + + +er + Lpl  +l+  ++++V+++l
       CTQ29841.1 296 FYIKLRDI--EDRSRLIAWLKEAEILAVFHY-IPLHSCPAGEQF-GEFRGEDRYTTQESERLVRLPLFYNLSVVNQRTVINSL 374
                      99999954..37*******************.8***99997666.5667788899999***************9999999986 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.9e-12   4.9e-09      64     189 ..      46     157 ..      18     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.9e-12
                    HTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-T CS
  Aminotran_1_2  64 klkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphN 159
                     + + +a+++ s++ +l e+++ ll+++pgde+++p+ t+ s  n++ l+g+++v + ++  +++++d   +e+a+++      kt+ i+   p +
     CTQ29841.1  46 RFGTAKALLTPSCTASL-EMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR-RDTMNIDETLIEAAITD------KTRAIV---PVH 130
                    45566577777777655.56666666********************************88.9****************......899998...999 PP

                    TT--B--HHHHHHHHHHHHHTTEEEEEEET CS
  Aminotran_1_2 160 PtGtvatleeleklldlakkynlllfvDea 189
                      G+++  +++ ++   a+kynl+++ D a
     CTQ29841.1 131 YAGVACEMDTIMAI---ADKYNLFVVEDAA 157
                    9*************...********99987 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.8e-09   9.8e-06      64     182 ..      52     162 ..      39     180 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 3.8e-09
                  EEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETT.SCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHH CS
  Aminotran_5  64 iiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldee.geldldelekllnektklvaithvsnvtGtiqpvee 160
                   + t ++t +++++al l   ++pgde+++ +    ++     ++   +gak++++ + ++  ++d   +e+++++kt+++   h     G+  +++ 
   CTQ29841.1  52 ALLTPSCTASLEMAALLL--DIQPGDEVIMPSYTFVSTA----NAFVLRGAKIVFVDIRRDtMNIDETLIEAAITDKTRAIVPVHY---AGVACEMDT 140
                  577889999*******99..6************999888....3344679******9976516899999***********999996...6999***** PP

                  HHHHHHHTT-EEEEE-TTTTTT CS
  Aminotran_5 161 igklakkkgalvlvDaaqavgh 182
                  i ++a k++ +v+ Daaq+v++
   CTQ29841.1 141 IMAIADKYNLFVVEDAAQGVMS 162
                  *******************987 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.3e-07   0.00034      53     201 ..      21     153 ..      13     169 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.3e-07
                 TTTGGGBBTTTTBTHHHHHHHHHHHHCT-SEEEEESSHHHHHHHHHHHHH--TTEEEEEESS--HHHHHHHHHS-EEEEEE--EB-TTS-BE---GGGG CS
    OKR_DC_1  53 ievveLgdLldheGaikeaqkyaarvfgadksyfvvnGTsssnkvvlnavltpgdlvlvdRNcHKSiehalvlsgatPvylepernalgiiggidlkef 151
                  + ++ g L    G +   q+++ + fg++k+ +    T+s  ++ l   ++pgd v+++  +  S ++a vl ga+ v++   r+ + i   +     
  CTQ29841.1  21 QSAMNSGKLCGDGGFTRRCQQWMEQRFGTAKALLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRRDTMNIDETL----- 114
                 55666788999999************************************************************************99886544..... PP

                 SHHHHHHHHHHSTTTGSESEEEEESS-TTSEEE-HHHHHHHHTTSESEEE CS
    OKR_DC_1 152 eeetlkekikevpdakaprlavitnsTYdGvlynakeivdkleklsdril 201
                     ++ +i++++ a            Y Gv+ ++++i+  ++k++  + 
  CTQ29841.1 115 ----IEAAITDKTRAIV-------PVHYAGVACEMDTIMAIADKYNLFVV 153
                 ....3344444333222.......33355555555555555555555555 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   3.2e-07   0.00082      16     169 ..      18     157 ..      13     162 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.2e-07
                      HHH.HCS----CCCT--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH-.-TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTT CS
  Beta_elim_lyase  16 daq.aaamlGdesYgedktvnrLedavaelfgkeaalfvpqGtaAnsillkill.qrgeevivtepahihfdetgaiaelagvklrdlknkeaG 107
                      d++ +a++ G +  g+   ++r ++ +++ fg+++al +p+ ta+ +++  +l  q+g+evi+  p+ ++  ++ ++ +l g+k + +++++  
       CTQ29841.1  18 DYMqSAMNSG-KLCGDGGFTRRCQQWMEQRFGTAKALLTPSCTASLEMAALLLDiQPGDEVIM--PSYTFVSTA-NAFVLRGAKIVFVDIRR-D 106
                      5674555555.5778888999************************7777655544******97..555665555.55578888888888888.5 PP

                      BE-HHH..HHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEET CS
  Beta_elim_lyase 108 kmdlek..leaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgA 169
                      +m++++  +eaai+++ +  + +++ +  v+++           ++ + aia+ky++ ++ D+A
       CTQ29841.1 107 TMNIDEtlIEAAITDKTR--AIVPVHYAGVACE-----------MDTIMAIADKYNLFVVEDAA 157
                      565554337888888555..5555544444444...........56778899999999999998 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   7.9e-06      0.02      66     171 ..      48     153 ..      36     170 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.9e-06
                      T-SEEEEESSHHHHHHHHHHTT.S-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEEST..TSHHHHHHHCCTTEEEEEEESS-TTTT----H CS
  Cys_Met_Meta_PP  66 ggeaalavssGmaAiaaailal.lkaGdeivvsddlYggtqrllkkvlkklgievkfvdt..sdleelekaikentklvylEtptnpllkvvDi 156
                      g+++al+++s +a++++a l l ++ Gde+++ ++ + +t + +     k+       dt   d+  +e+ai+++t+++     +      + +
       CTQ29841.1  48 GTAKALLTPSCTASLEMAALLLdIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRRDTmnIDETLIEAAITDKTRAIVPVHYAGV---ACEM 138
                      67899******999977666554889***************9987776664333333333112445689********9954333333...3344 PP

                      HHHHHHHHHTT-EEE CS
  Cys_Met_Meta_PP 157 ekiaklakkagvlvv 171
                       +i+++a k ++ vv
       CTQ29841.1 139 DTIMAIADKYNLFVV 153
                      555555555555555 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.9e-05      0.23      45     102 ..     153     209 ..     139     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.9e-05
       GCD14  45 vesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvc 102
                 ve  +  g +s++  r+++  Gh+  f fhe++  +a  e   + +++ + v+  ++ 
  CTQ29841.1 153 VED-AAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDRTLVERAEII 209
                 554.35689***************************9999888888888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 3274.33
//
Query:       CTQ29842.1  [L=416]
Description: O-antigen translocase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-11   42.7  16.1    4.3e-11   42.7  16.1    1.6  2  Polysacc_synt    Polysaccharide biosynthesis protein
    1.7e-08   34.1   7.4      3e-08   33.3   7.4    1.4  1  Polysacc_synt_3  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> Polysacc_synt  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7  16.1   4.8e-15   4.3e-11       2     273 ..       4     283 ..       3     284 .. 0.84
   2 ?   -3.7   1.5      0.67     6e+03     155     162 ..     374     381 ..     334     412 .. 0.54

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 4.8e-15
  Polysacc_synt   2 lkgvivlllsqlitkllafvtlvylarilgpegfGlvalalaivtllviltdlGlnaalvreiakyrek....kelvslillnvl.lvllvlvllf 92 
                    +k ++++++s+l++ +++++++ +la   gp+g+G+      +vt l +l++ G+ + +++++a+++++    k+ v     +vl +++l+++++ 
     CTQ29842.1   4 AKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLVTVLGVLAGAGIFNGVTKLVAQHHDDpprlKQVVGTSSAMVLgFSTLLALVFL 99 
                    67789****************************************************************975533333333333313344444444 PP

  Polysacc_synt  93 llllliaa.flglpelavlylilalmllllvgvasfrrglfqglermkyaavsqvveqlsrvilvliavflfldivaavlgavlaalvggivslav 187
                    l++ +i++ ++g +++  l+++ al+ +  ++ a f   l +g+++   +a s ++ +l+ v++  ++  l++ + +a+lg++l   +  + + ++
     CTQ29842.1 100 LAAAPISQgLFGHTHYQGLVRLVALVQM-GIAWANFLLALMKGFRDAAGNAFSLIAGSLIGVAAYYACYVLGG-YQGALLGLALVPALVVVPAGIM 193
                    445555559*************999999.899999**************************************.8887777665555555777777 PP

  Polysacc_synt 188 lrkkfr.prfvils...lklvrellsfsapltisslaillytyidsillglllgaeavGiYnaayqllvaisgllapivtaalfPvfsel 273
                    l ++ + p  + +      l  +l +f++   i+s++ ++   + ++ll++ +g eavGi++++ +++ a  ++++++++  l P++s+l
     CTQ29842.1 194 LWRRGNiPLSALRPrwdNGLAGQLSKFTLMALITSVTLPVAYVMMRNLLAAHYGWEAVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL 283
                    7777754333333211246899**********************************************************99******97 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.67
  Polysacc_synt 155 lvliavfl 162
                    l+++ ++l
     CTQ29842.1 374 LTAFSHWL 381
                    22222233 PP

>> Polysacc_synt_3  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   7.4   3.3e-12     3e-08      30     291 ..      60     330 ..      34     332 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 3.3e-12
  Polysacc_synt_3  30 mGlssaliqkedlteedlstvft...fnlvlgllialvlfllaplias.fynqpelvtvlrvlalvlilsglssvqeallrrelkFkklfkitl 119
                       G+ + + q++d+  +  ++v t   + l +++l+alv++l+a  i++ +++  + + ++r++alv +  +  +   al+ + ++  +  +++l
       CTQ29842.1  60 NGVTKLVAQHHDDPPRLKQVVGTssaMVLGFSTLLALVFLLAAAPISQgLFGHTHYQGLVRLVALVQMGIAWANFLLALM-KGFRDAAGNAFSL 152
                      47888888888777665555554111557789999***99999999988*****************99999999988877.6788888888888 PP

  Polysacc_synt_3 120 vssvvgvivaivlAllglgvw.ALvigtllssllsl...vllwlaskwr...prlkfslkslkelfsfglklllsnllnylarnldnlliGkvl 206
                      ++  + +++a ++ +++ g+  AL+   l+ +l+ +   ++lw + +     +r++++   + +l +f l +l+++++  +a  ++  l +  +
       CTQ29842.1 153 IAGSLIGVAAYYACYVLGGYQgALLGLALVPALVVVpagIMLWRRGNIPlsaLRPRWDNGLAGQLSKFTLMALITSVTLPVAYVMMRNLLAAHY 246
                      888888899999999999997589999999999876332444444333266689999************************************* PP

  Polysacc_synt_3 207 ssaaLGlYsvakrlaslpvaeitsviakVlfPalSrlqddkkklrelylkvlrlialivlPiavglavvaellvkvllGsqWlea 291
                      + +a+G+++   ++++++++ it++++  l+P+lSrl+    ++ + + k+l+++   v  +   + ++++ ++ +l++++++ +
       CTQ29842.1 247 GWEAVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLSAK-TDITREIVKSLKFVLPAVAAASLTVWLLRDFAIWLLFSDRFTAM 330
                      *************************************987.5666667789999999999999999*************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3200.00
//
Query:       CTQ29843.1  [L=358]
Description: TDP-Fuc4NAc:lipidIIFuc4NAc transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.9e-181  602.9   0.0   2.2e-181  602.7   0.0    1.0  1  Glyco_transf_56  4-alpha-L-fucosyltransferase glycosyl transf


Domain annotation for each model (and alignments):
>> Glyco_transf_56  4-alpha-L-fucosyltransferase glycosyl transferase group 56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  602.7   0.0  1.2e-185  2.2e-181       1     357 [.       1     354 [.       1     355 [. 0.99

  Alignments for each domain:
  == domain 1  score: 602.7 bits;  conditional E-value: 1.2e-185
  Glyco_transf_56   1 mttlihvlgsdiphhnqtvlrffndelaeelpeeqkrrfmvvskdealleaypaleievfadkkalakaviakakkdrkarfllhGqfnaslWl 94 
                      mt+lihvlgsdiphhnqtvlrffndela+     q+rrfm+v++++++ + ypal+i++++ kkala+avia+ak++r++rf++hGqfn+ lWl
       CTQ29843.1   1 MTALIHVLGSDIPHHNQTVLRFFNDELAAD---PQARRFMIVGDEASVRDGYPALDITCYPGKKALAQAVIATAKANRQQRFFFHGQFNTGLWL 91 
                      99*************************986...6679********************************************************* PP

  Glyco_transf_56  95 alllGklkaaqvlWhiWGadlyeessslkfrlfyllrrlaqkrvgrvfatrGdleylaqrakkvkdsllyfPtrmdealtlaeekeeeeeklti 188
                      all+G ++++q+ WhiWGadlye+s+slkfrlfy+lrr+aq+rvgrvfatrGdl+++a+r+++v+ +llyfPtrmd+al++ ++++ + ++lti
       CTQ29843.1  92 ALLSGGIRPSQFNWHIWGADLYENSASLKFRLFYPLRRMAQGRVGRVFATRGDLSWFANRHPRVPGELLYFPTRMDPALNTLADNAPRGDTLTI 185
                      ********************************************************************************************** PP

  Glyco_transf_56 189 llGnsGdrsnrhiaalkaikqqfgekvkvivPmGyPanneayieeveeaaerlfsaenveilreklefeeylallrqCdlGyfiferqqgiGtl 282
                      l+GnsGdrsn+hiaalkai+qqfg++v+vivPmGyPann+ayi+ev+ea+++lfs e+++il+eklef++ylallr+CdlGyf+f+rqqgiGtl
       CTQ29843.1 186 LVGNSGDRSNEHIAALKAIHQQFGDTVNVIVPMGYPANNDAYINEVREAGAALFSGEHLQILSEKLEFHDYLALLRRCDLGYFLFARQQGIGTL 279
                      ********************************************************************************************** PP

  Glyco_transf_56 283 clliqagiPlvlsrknpflqdlqeqqvpvlfaedeldeaavreakrqlasvdkekiaffapnylkgWkqalalaa 357
                      clliqagiP+vl+r+npf+qd++eq+vpvlf++d+ld ++vrea+rqlasvdk++iaff+pnyl+gW++al+laa
       CTQ29843.1 280 CLLIQAGIPCVLNRENPFWQDMAEQHVPVLFTSDALDVSVVREAQRQLASVDKSAIAFFRPNYLTGWRRALRLAA 354
                      ***********************************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2922.01
//
Query:       CTQ29844.1  [L=448]
Description: putative Wzy protein involved in ECA polysaccharide chain elongation [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.9e-252  836.6  46.4   5.5e-252  836.4  46.4    1.0  1  WzyE      WzyE protein, O-antigen assembly polymerase


Domain annotation for each model (and alignments):
>> WzyE  WzyE protein, O-antigen assembly polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  836.4  46.4  3.1e-256  5.5e-252       1     442 [.       1     443 [.       1     447 [. 0.99

  Alignments for each domain:
  == domain 1  score: 836.4 bits;  conditional E-value: 3.1e-256
        WzyE   1 mtllqfagllvvyllslllvatltykefrrvrfnfnvlfsllflltfyfgfpltsvlvfrfdvavvpaelllqallsatafyaiyyvsyktrlrkata. 98 
                 mtl+qf+gllvv+lls+l++at t+ efrrvrfnfnv+fsllflltf+fgfplts+lvfrfdv+v+p+e+llq+ll a +fya+yyv+yktrlr+a++ 
  CTQ29844.1   1 MTLMQFSGLLVVWLLSTLFIATATWFEFRRVRFNFNVFFSLLFLLTFFFGFPLTSILVFRFDVSVAPPEILLQTLLIAVCFYAVYYVTYKTRLRSASRe 99 
                 9**********************************************************************************************9886 PP

        WzyE  99 aprkplltlnrvetkltalllalvalvtvavfflknglllfklesysqifssevsgvalkrffyffipamlvvyflkqtrrawllflvstvafglltyv 197
                   ++pl+t+nrvet+l + +l+ +al +v++ff++ng+llfkl+sysqifs+evsgvalkrffyffipamlvvyfl+q+ +aw++flvstvafgllty 
  CTQ29844.1 100 VAHRPLFTMNRVETHLAWGILMGLALLCVGIFFAHNGFLLFKLNSYSQIFSAEVSGVALKRFFYFFIPAMLVVYFLRQDYKAWIFFLVSTVAFGLLTYA 198
                 8899*********************************************************************************************** PP

        WzyE 198 ivggtraniiiafalflfigivrgwitlwmlaaagvvgivgmfwlalkrygldvsgdeafytflyltrdtfspwenlalllqnydkidfqglapivrdf 296
                 ivggtraniiiafa+flfigi+rgwi+lwmlaaagv+givgmfwlalkryg++vsgdeafytflyltrdtfspwenlalllqnydkidfqglap++rdf
  CTQ29844.1 199 IVGGTRANIIIAFAIFLFIGIIRGWISLWMLAAAGVLGIVGMFWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLALLLQNYDKIDFQGLAPMIRDF 297
                 *************************************************************************************************** PP

        WzyE 297 yvfipswlwpdrpslvlnsanyftwevlnnhsglaisptligslvvmggvlliplgavvvgliikgfdalyergkqesnrykaavlqsfcfgavfnliv 395
                 yvfipsw+w +rp++vln+anyftwevlnnhsglaisptligslvvmggv+++plgav+vgliik+fd+lye g++esnrykaa+l+sfcfga+fn+iv
  CTQ29844.1 298 YVFIPSWMWHGRPTMVLNTANYFTWEVLNNHSGLAISPTLIGSLVVMGGVWFVPLGAVAVGLIIKWFDWLYELGNRESNRYKAAILHSFCFGAIFNMIV 396
                 *************************************************************************************************** PP

        WzyE 396 laregldafvsrvvffvvifgvcllvakllywlldsaglikartesa 442
                 laregld+f srvvff+vifg+cll+akllyw+lds gli++r +  
  CTQ29844.1 397 LAREGLDSFGSRVVFFLVIFGICLLAAKLLYWFLDSVGLIHKRVKPL 443
                 ******************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3069.34
//
Query:       CTQ29845.1  [L=248]
Description: UDP-N-acetyl-D-mannosaminuronic acid transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-52  176.2   0.2    6.6e-52  175.9   0.2    1.1  1  Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family


Domain annotation for each model (and alignments):
>> Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   0.2   3.7e-56   6.6e-52       2     167 ..      68     233 ..      67     234 .. 0.96

  Alignments for each domain:
  == domain 1  score: 175.9 bits;  conditional E-value: 3.7e-56
  Glyco_tran_WecB   2 dlvlpDGigvvlaarlllgkplpervagidlieelleraeeeglrvfllGgkpevlekaaerlrekypglriagthdgy.keeeeeaiieaina 94 
                      ++ ++DGi+vv  +r    + + +rvag+dl+e+l++ra +eg +vfl+Ggkpevl+++++rlr+++ +++i+g +dgy  +e+ +a+ e+i++
       CTQ29845.1  68 EFKYADGISVVRSLRKKYPQAQVSRVAGADLWEALMQRAGAEGTPVFLVGGKPEVLAQTESRLRQRW-QVNIVGSQDGYfTPEQRQALFERIRD 160
                      6789***********555688899******************************************9.9**********989************ PP

  Glyco_tran_WecB  95 skpdlllvglGapkqEkwiarlkeelkakviigvGaafdflagkvkraPkwmqklgleWlyRllkePkRlwrr 167
                      s+++++ v++G+p+qE+++++ ++ +++++++gvG++ d+++g+v+raPk++q+lgleW+yRll +P+R++r+
       CTQ29845.1 161 SGAKIVTVAMGSPRQEIFMRDCRRLYPHALYMGVGGTYDVFTGHVHRAPKFWQDLGLEWFYRLLLQPSRIKRQ 233
                      ************************77888*****************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1806.33
//
Query:       CTQ29846.1  [L=461]
Description: putative amino acid transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.7e-101  340.2  53.7   2.1e-101  339.9  53.7    1.0  1  AA_permease    Amino acid permease
    2.7e-39  135.2  55.5    3.7e-39  134.8  55.5    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.9  53.7  2.3e-105  2.1e-101       1     436 [.      16     428 ..      16     452 .. 0.94

  Alignments for each domain:
  == domain 1  score: 339.9 bits;  conditional E-value: 2.3e-105
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+ +ialgg iG+glf+g +++l  aGp ++llay++ag+++f++m+s+ge+ ++ p++g+f++ya+r+++p +G+ ++++y+f+w +v + e+ta++
   CTQ29846.1  16 HIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIG 112
                  7889************************.********************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivg..iillaggkpnkga.gfrflgdngsifknnlppgfake 193
                   ++qfw  ++++  +w+ +++ ++++ + nl++v++yge+ef++a+ik+ +ii +i+vg  + + +g ++  +  gf +l+++g+    ++ +g    
   CTQ29846.1 113 VYVQFW--FPEMA-QWIPALIAVGLVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVVGlgV-IFFGFGNGGHSiGFGNLTEHGG----FFAGG---- 198
                  ******..*****.*********************************************953.444444444445**********....88888.... PP

  AA_permease 194 eegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlapl 291
                       k+f+ ++ ivv +++G el++i+agE+k+P+ ++  a+ +v++ri+ifYv+++++i+ ++p++  g+        spfv+ + + g+ ++a +
   CTQ29846.1 199 ----WKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWDQIGSNG------SPFVLTFAKIGITAAAGI 286
                  ....9****************************************************************99988......9***************** PP

  AA_permease 292 inaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylr 389
                  in+v+ltaals  ns++ys+ R+ly+lak++ +P+  +kvs++gvP ++++ls++i l++  l+++ ++++ vf ++ ++s l g++ w +i++s+lr
   CTQ29846.1 287 INFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAIGKVSRNGVPSVGVALSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLR 384
                  ************************************************************************************************** PP

  AA_permease 390 fRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyaylt 436
                  fR+    ++ +i++ +f++ l+p+  ++++a+li +l+ ++l + ++
   CTQ29846.1 385 FRRV---HQAAIASHPFRSLLFPWANYFTMAFLICVLVGMGLNDETR 428
                  ***9...889999***************************9988777 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.8  55.5   4.1e-43   3.7e-39       9     424 ..      20     440 ..      15     441 .. 0.85

  Alignments for each domain:
  == domain 1  score: 134.8 bits;  conditional E-value: 4.1e-43
  AA_permease_2   9 lvigsvigsgifvknlaas....ggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaa 100
                    +++g +ig+g f+   aas    +gp+++l ++ia l ++++++  + E+  + p  g   vy+++ +++++++l+aw++wf +++v  ++ + a+
     CTQ29846.1  20 IALGGTIGVGLFMG--AAStlkwAGPSVLLAYIIAGLFVFFIMR-SMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVG-ISEITAI 111
                    78999********9..5552225666666666666666655444.555554448********************************98.7888899 PP

  AA_permease_2 101 syllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.......stetdtffpngwpg 189
                    + ++++++p++ ++  +  l   + + lval n+ +++ ++ i ++ + +k+  ++i++i++gl ++ +g  +          te++ ff++gw+g
     CTQ29846.1 112 GVYVQFWFPEMAQW--IPAL---IAVGLVALANLAAVRLYGEIEFWFAMIKV-TTIIVMIVVGLGVIFFGFGNGGhsigfgnLTEHGGFFAGGWKG 201
                    99999999*99654..4444...456778999********************.6*************987777555555555444445******** PP

  AA_permease_2 190 vllgllivlwsfdGfesaanvseevkk.k.dvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggkvvaiivvilials 283
                    +l +l+iv+ s++G+e +   + e+k+   +++ a   +l  +l++y++  ++++++ p+d+i +++   s++ l f++ g +++a+i+++++  +
     CTQ29846.1 202 FLTALCIVVASYQGVELIGITAGEAKNpQvTLRSAVGKVLWRILIFYVGAIFVIVTIFPWDQIGSNG---SPFVLTFAKIGITAAAGIINFVVLTA 294
                    ************************999744899******************************9744...4699********************** PP

  AA_permease_2 284 llgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslgliisyllliigalilrkkrp 377
                    +l + n+ ++++ r+l+ala+ + lP  + kv+++g p++++ l+ ++ l+ ++l ++++     + ++ s+s+l+ ++++++++i+ l  r+   
     CTQ29846.1 295 ALSGCNSGMYSCGRMLYALAKNRQLPAAIGKVSRNGVPSVGVALSILILLVGSCLNYIIPnpQRVFVYVYSASVLPGMVPWFVILISQLRFRRVHQ 390
                    **********************************************************999999***********************997766644 PP

  AA_permease_2 378 hl...krpgkilvaiigalfllfllvalffppkgpatqssliytiiltva 424
                           ++  l+ +   ++  fl+ +l  ++ + +t  sl++ ii+++a
     CTQ29846.1 391 AAiasHPFRSLLFPWANYFTMAFLICVLVGMGLNDETRMSLFVGIIFLAA 440
                    33333336667888888888888888888887788888888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3563.76
//
Query:       CTQ29847.1  [L=66]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       146  (0.00814323); expected 358.6 (0.02)
Passed bias filter:                      138  (0.00769703); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 515.91
//
Query:       CTQ29848.1  [L=398]
Description: putative protoheme IX synthesis protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-36  124.0   2.7    2.8e-36  124.0   2.7    3.4  4  HemY_N     HemY protein N-terminus
    2.5e-07   30.3  14.9    1.8e-05   24.5   0.0    5.1  7  TPR_2      Tetratricopeptide repeat
    0.00027   21.4  18.5        1.1    9.9   0.6    5.1  5  TPR_19     Tetratricopeptide repeat
    0.00082   20.0  30.8     0.0039   17.9   0.5    6.8  7  TPR_14     Tetratricopeptide repeat
     0.0041   16.9   1.2      0.054   13.3   0.0    3.4  4  TPR_1      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.012   15.7   0.3        1.4    9.0   0.0    3.1  3  MAS20      MAS20 protein import receptor
      0.015   15.5   0.2         15    6.1   0.1    3.9  3  TPR_8      Tetratricopeptide repeat
      0.025   15.2   3.4      0.025   15.2   3.4    4.8  5  TPR_16     Tetratricopeptide repeat
       0.06   13.5  13.2       0.43   10.8   0.3    3.9  3  TPR_9      Tetratricopeptide repeat
       0.23   12.4   0.0       0.23   12.4   0.0    1.8  1  DUF4834    Domain of unknown function (DUF4834)
       0.45   10.4   2.8       0.69    9.8   2.8    1.2  1  Claudin_3  Tight junction protein, Claudin-like
        1.2   10.0   9.8        2.2    9.1   0.0    4.1  4  TPR_6      Tetratricopeptide repeat
        1.5    9.1  15.4        4.4    7.7   0.6    3.8  3  TPR_12     Tetratricopeptide repeat
        2.3    8.2   8.2        9.2    6.3   2.0    2.8  2  OppC_N     N-terminal TM domain of oligopeptide transport per


Domain annotation for each model (and alignments):
>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   2.7   2.2e-39   2.8e-36       1     107 []      26     132 ..      26     132 .. 0.99
   2 ?    0.0   0.0      0.74   9.5e+02      72      91 ..     131     150 ..     130     169 .. 0.82
   3 ?   -1.9   0.0       2.9   3.7e+03      48      62 ..     249     264 ..     243     295 .. 0.62
   4 ?    2.1   0.1      0.17   2.2e+02      69      91 ..     338     360 ..     310     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 124.0 bits;  conditional E-value: 2.2e-39
      HemY_N   1 GyVliawggyrietslvvavlllvllfvllylllrllrlllrlparvrrwrrrrrerkarealseGlialaeGdfarAekaaakaaklseapllaylla 99 
                 GyVli++++y+iets++ +v++l+l++v+l+++++llr+++r+ a +r w+  r++r+ar++++++l++laeGd+++ ek++ak+a+++e+p+++ylla
  CTQ29848.1  26 GYVLIQTDNYNIETSVTGLVIILILAMVVLFAIEWLLRRIFRTGAHTRGWFVGRKRRRARKQTEQALLKLAEGDYQQVEKLMAKNADHAEQPVVNYLLA 124
                 9************************************************************************************************** PP

      HemY_N 100 AqAaqaqg 107
                 A+Aaq++g
  CTQ29848.1 125 AEAAQQRG 132
                 *****997 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.74
      HemY_N  72 eGdfarAekaaakaaklsea 91 
                  Gd arA +++ +a +l+ +
  CTQ29848.1 131 RGDEARANQHLERATELAGD 150
                 58999999999999998866 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.9
      HemY_N  48 rrw.rrrrrerkarea 62 
                 r+w r+++r+ +a   
  CTQ29848.1 249 REWwRNQSRKTRALVP 264
                 5551444455555444 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.17
      HemY_N  69 alaeGdfarAekaaakaaklsea 91 
                  + +G++++A  a+++a+k+ ++
  CTQ29848.1 338 LMRHGEWQEASIAFRAALKQRPD 360
                 5789**************99976 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.8     1e+04       7      17 ..      25      35 ..      24      36 .. 0.87
   2 ?   -1.6   0.1       3.3   4.2e+03      19      28 ..      83      92 ..      79      99 .. 0.80
   3 ?   -2.6   0.0       6.6   8.5e+03      12      19 ..      95     102 ..      88     108 .. 0.60
   4 !    7.4   1.5    0.0041       5.3       6      33 ..     123     150 ..     120     151 .. 0.88
   5 ?   -2.4   0.0       5.6   7.2e+03      20      34 .]     172     186 ..     164     186 .. 0.75
   6 !   24.5   0.0   1.4e-08   1.8e-05       2      33 ..     329     360 ..     328     361 .. 0.94
   7 ?    4.8   0.1     0.028        36       3      21 ..     363     381 ..     361     383 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.8
       TPR_2  7 lGlayyklgdy 17
                +G+++++ ++y
  CTQ29848.1 25 QGYVLIQTDNY 35
                6999****999 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.3
       TPR_2 19 eAleafekAl 28
                +A++  e+Al
  CTQ29848.1 83 RARKQTEQAL 92
                7899999998 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 6.6
       TPR_2  12 yklgdyee 19 
                 ++ gdy++
  CTQ29848.1  95 LAEGDYQQ 102
                 45566654 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0041
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPn 33 
                   ++a+ ++gd ++A +++e+A el+ +
  CTQ29848.1 123 LAAEAAQQRGDEARANQHLERATELAGD 150
                 57899*******************9876 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 5.6
       TPR_2  20 AleafekAleldPnn 34 
                 A++  +k le+ P++
  CTQ29848.1 172 ARHGIDKLLEITPRH 186
                 666678999999976 PP

  == domain 6  score: 24.5 bits;  conditional E-value: 1.4e-08
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                  ++  lG+++++ g+++eA  af++Al+  P+
  CTQ29848.1 329 LLWSTLGQSLMRHGEWQEASIAFRAALKQRPD 360
                 68***************************998 PP

  == domain 7  score: 4.8 bits;  conditional E-value: 0.028
       TPR_2   3 alynlGlayyklgdyeeAl 21 
                  + +l++a+ +l ++eeA+
  CTQ29848.1 363 DYAWLADALDRLHQPEEAA 381
                 5889**************7 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   6.3   0.00099       1.3       2      58 ..      95     151 ..      94     153 .. 0.95
   2 !    9.9   0.6   0.00082       1.1       3      65 ..     130     193 ..     130     196 .. 0.83
   3 ?    2.3   0.0       0.2   2.5e+02      28      58 ..     266     296 ..     263     300 .. 0.84
   4 !    7.5   0.0    0.0045       5.8      14      58 ..     317     361 ..     305     365 .. 0.85
   5 !    9.1   0.7    0.0015       1.9       2      46 ..     339     382 ..     338     388 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00099
      TPR_19   2 laegdyaeAlalleqalqedpknaearllL.AeallalgqldeAealLdalpeedpdd 58 
                 laegdy++  +l+++  ++ ++++ + +lL Aea  + g+ + A + L+++ e + dd
  CTQ29848.1  95 LAEGDYQQVEKLMAK-NADHAEQPVVNYLLaAEAAQQRGDEARANQHLERATELAGDD 151
                 89*************.7999********999*********************999985 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00082
      TPR_19   3 aegdyaeAlalleqalqedpknaearl..lLAeallalgqldeAealLdalpeedpddaryasLl 65 
                 ++gd a+A ++le+a +e ++++ +      ++++la ++  +A+  +d+l+e +p ++++ +L 
  CTQ29848.1 130 QRGDEARANQHLERA-TELAGDDLIPVeiTRVRLQLARNENHAARHGIDKLLEITPRHPEVLRLA 193
                 579999********9.555666666552255****************************998885 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.2
      TPR_19  28 rllLAeallalgqldeAealLdalpeedpdd 58 
                 + ++Ae l+++ + d A++++ + ++++ dd
  CTQ29848.1 266 QVAMAERLIESDDHDTAQQIIIDGLKKQYDD 296
                 67899999***********999999998886 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0045
      TPR_19  14 leqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 l+q +++  + + ++  L + l+  g+++eA  +  a++++ pd 
  CTQ29848.1 317 LRQQIKAVGDRPLLWSTLGQSLMRHGEWQEASIAFRAALKQRPDA 361
                 5555566788999999***************************95 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.0015
      TPR_19   2 laegdyaeAlalleqalqedpk.naearllLAeallalgqldeAea 46 
                 +  g  +eA  ++++al++ p+  ++a+l  A+al  l q++eA a
  CTQ29848.1 339 MRHGEWQEASIAFRAALKQRPDaFDYAWL--ADALDRLHQPEEAAA 382
                 677889999999**********8888888..*************87 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       7.9     1e+04       8      16 ..      91      99 ..      81     109 .. 0.50
   2 !    7.5   4.1    0.0068       8.7       4      35 ..     121     152 ..     118     166 .. 0.79
   3 ?    0.4   0.1       1.3   1.6e+03       8      39 ..     160     191 ..     155     196 .. 0.76
   4 ?    4.4   0.0     0.064        82       3      34 ..     265     296 ..     263     300 .. 0.85
   5 ?    4.4   0.0     0.066        84      15      43 ..     308     336 ..     305     337 .. 0.89
   6 !   17.9   0.5   3.1e-06    0.0039       3      39 ..     330     367 ..     328     368 .. 0.87
   7 ?    5.5   1.3     0.029        37       4      28 ..     364     388 ..     361     396 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 7.9
      TPR_14  8 aeallalGd 16
                a + la Gd
  CTQ29848.1 91 ALLKLAEGD 99
                222233444 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0068
      TPR_14   4 llalaeallalGdpdeAiallrralalaPdda 35 
                 +l++aea  ++Gd ++A ++l+ra +la dd+
  CTQ29848.1 121 YLLAAEAAQQRGDEARANQHLERATELAGDDL 152
                 678899**********************9994 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.3
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawl 39 
                 +++ la+ +  +A+   +++l+  P ++e+++
  CTQ29848.1 160 VRLQLARNENHAARHGIDKLLEITPRHPEVLR 191
                 56666777777777778889999999998876 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.064
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdd 34 
                 ++ a+ae l +++d+d+A ++  + l+++ dd
  CTQ29848.1 265 LQVAMAERLIESDDHDTAQQIIIDGLKKQYDD 296
                 56799****************99999987555 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.066
      TPR_14  15 GdpdeAiallrralalaPddaeawlllaq 43 
                  +p++ +++lr+ +++  d + +w  l+q
  CTQ29848.1 308 NNPEQLEKVLRQQIKAVGDRPLLWSTLGQ 336
                 689********************987776 PP

  == domain 6  score: 17.9 bits;  conditional E-value: 3.1e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdd.aeawl 39 
                 ++  l++ l++ G+++eA  ++r+al++ Pd  + awl
  CTQ29848.1 330 LWSTLGQSLMRHGEWQEASIAFRAALKQRPDAfDYAWL 367
                 7999**************************97245665 PP

  == domain 7  score: 5.5 bits;  conditional E-value: 0.029
      TPR_14   4 llalaeallalGdpdeAiallrral 28 
                 ++ la+al +l +p+eA+a+ r+ l
  CTQ29848.1 364 YAWLADALDRLHQPEEAAAMRRDGL 388
                 6789**************9977765 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.7   7.3e+03      12      19 ..      95     102 ..      88     105 .. 0.61
   2 ?   -1.9   0.1       2.7   3.5e+03      12      31 ..     129     148 ..     125     151 .. 0.67
   3 !   13.3   0.0   4.2e-05     0.054       3      33 ..     330     360 ..     328     361 .. 0.94
   4 ?   -0.3   0.0      0.86   1.1e+03       5      21 ..     365     381 ..     363     383 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.7
                 HHTT-HHH CS
       TPR_1  12 fklgkyde 19 
                 +  g+y++
  CTQ29848.1  95 LAEGDYQQ 102
                 45566665 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.7
                 HHTT-HHHHHHHHHHHHHHS CS
       TPR_1  12 fklgkydeAleyyekALeln 31 
                 ++ g+   A ++ e+A el 
  CTQ29848.1 129 QQRGDEARANQHLERATELA 148
                 55666666668899998886 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 4.2e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                  +  lG+ +++ g+++eA  +++ AL+ +P+
  CTQ29848.1 330 LWSTLGQSLMRHGEWQEASIAFRAALKQRPD 360
                 6999************************997 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.86
                 HHHHHHHHHTT-HHHHH CS
       TPR_1   5 ynlGnayfklgkydeAl 21 
                   l+ a+ +l +++eA 
  CTQ29848.1 365 AWLADALDRLHQPEEAA 381
                 568999*********96 PP

>> MAS20  MAS20 protein import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0011       1.4      33     106 ..      81     149 ..      43     158 .. 0.73
   2 ?    2.3   0.0      0.13   1.7e+02      66     101 ..     254     289 ..     214     319 .. 0.76
   3 ?    0.4   0.0      0.51   6.5e+02      81     103 ..     334     356 ..     290     361 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
       MAS20  33 rkkqakaakeeeeaekaekkk..kealeeakee.lptdaeevekfFleevqlGEellaqgeeeeaaehlynAlkvcp 106
                 r++++k+       ++++  k  +   +++ e+ + ++a++ e+ +++ +  +E   ++g+e  a +hl +A  + +
  CTQ29848.1  81 RRRARKQ-------TEQALLKlaEGDYQQV-EKlMAKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERATELAG 149
                 2222211.......1111111222122333.34478999*********************************98765 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.13
       MAS20  66 tdaeevekfFleevqlGEellaqgeeeeaaehlynA 101
                 +++++  + +  +v+++E+l+++++++ a + ++  
  CTQ29848.1 254 NQSRKTRALVPLQVAMAERLIESDDHDTAQQIIIDG 289
                 6667777788889**********9999987766655 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.51
       MAS20  81 lGEellaqgeeeeaaehlynAlk 103
                 lG++l+++ge +ea  ++  Alk
  CTQ29848.1 334 LGQSLMRHGEWQEASIAFRAALK 356
                 57777777777777777777776 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1     0.011        15       4      33 ..     121     150 ..     119     151 .. 0.89
   2 ?    3.7   0.0      0.07        90       4      33 ..     331     360 ..     330     360 .. 0.88
   3 ?    0.0   0.0         1   1.3e+03       4      21 ..     364     381 ..     364     383 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.011
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                 y++ + + ++ gd   A + +e+a+el+ d
  CTQ29848.1 121 YLLAAEAAQQRGDEARANQHLERATELAGD 150
                 677789*********************876 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.07
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +  lg+ ++  g+ +eA  +++ al+ +pd
  CTQ29848.1 331 WSTLGQSLMRHGEWQEASIAFRAALKQRPD 360
                 677999999999999***********9886 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 1
                 HHHHHHHHHHTT-HHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAk 21 
                 y +l+++++ l + eeA 
  CTQ29848.1 364 YAWLADALDRLHQPEEAA 381
                 789************996 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       2.3   2.9e+03      13      27 ..      81      96 ..      77     107 .. 0.59
   2 ?    1.6   6.5      0.36   4.6e+02       2      34 ..     123     155 ..     122     173 .. 0.79
   3 ?    1.2   0.1      0.46   5.9e+02       4      50 ..     160     203 ..     157     205 .. 0.81
   4 ?   -0.9   0.4       2.1   2.7e+03      26      53 ..     216     243 ..     214     250 .. 0.79
   5 ?   15.2   3.4   1.9e-05     0.025       3      54 ..     334     381 ..     332     385 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.3
      TPR_16 13 yddAaaal.eaalkrd 27
                 ++A+++  +a+lk++
  CTQ29848.1 81 RRRARKQTeQALLKLA 96
                5666666634444433 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.36
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaa 34 
                  +a aa ++gd ++A   le+a+++++++   +
  CTQ29848.1 123 LAAEAAQQRGDEARANQHLERATELAGDDLIPV 155
                 6899*********************99886554 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.46
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrl 50 
                  r+ l++++  +A++  + +l+     P+++e l l  +a+ r g +
  CTQ29848.1 160 VRLQLARNENHAARHGIDKLLEIT---PRHPEVLRLAEQAYTRTGAW 203
                 67889999999999999999999*...88888888877777777766 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 2.1
      TPR_16  26 rdpssPdaaeAllllgdaalrqgrlaeA 53 
                 ++ ++ ++++Al  l+++ l  + la+ 
  CTQ29848.1 216 ANVGDEAHRAALEQLAWVGLMDKALADG 243
                 5666778999999999999998888875 PP

  == domain 5  score: 15.2 bits;  conditional E-value: 1.9e-05
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54 
                 l+++++r+g++++A  a++aalk++   Pda + + +l+da+ r+   +eAa
  CTQ29848.1 334 LGQSLMRHGEWQEASIAFRAALKQR---PDAFDYA-WLADALDRLHQPEEAA 381
                 899**********************...*999966.5788888887777776 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.9     0.045        57      35      62 ..     124     151 ..     114     165 .. 0.76
   2 ?    4.9   0.6     0.023        29       6      47 ..     164     205 ..     159     231 .. 0.81
   3 ?   10.8   0.3   0.00034      0.43      27      64 ..     326     363 ..     324     384 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.045
       TPR_9  35 RGlllaqlGclsaAladLeaylalapda 62 
                  + + +q+G+ + A + Le++ +la+d+
  CTQ29848.1 124 AAEAAQQRGDEARANQHLERATELAGDD 151
                 5788999999999999999999999955 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.023
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsa 47 
                 + ++++ +a   ++ ll + P++pe +r   +++ + G+++ 
  CTQ29848.1 164 LARNENHAARHGIDKLLEITPRHPEVLRLAEQAYTRTGAWQS 205
                 5667777888889999*********99999999999999985 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00034
       TPR_9  27 ddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 d+p ++   G+ l++ G +++A  ++ a+l + pda d
  CTQ29848.1 326 DRPLLWSTLGQSLMRHGEWQEASIAFRAALKQRPDAFD 363
                 68999*****************************9866 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00018      0.23       8      50 ..      44      88 ..      40     144 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00018
     DUF4834  8 lifiiailviglsilsvilrtvfglgsrkkss......ksaqkqfgnst 50
                l++i+++++++l  + ++lr++f +g ++++       +    + +++t
  CTQ29848.1 44 LVIILILAMVVLFAIEWLLRRIFRTGAHTRGWfvgrkrR----RARKQT 88
                578888889999999*******99888777764322211....111111 PP

>> Claudin_3  Tight junction protein, Claudin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.8   0.00054      0.69      64     119 ..       5      60 ..       1      69 [. 0.93

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00054
   Claudin_3  64 lalflvviliyivivrkvkkngysksvrklffliallslliviltviaviliavnv 119
                 l+lf+++i  +++  ++  ++gy   +  ++++ + ++ l++il+++ v+l+a+++
  CTQ29848.1   5 LLLFALLIAGIVLGPMIAGHQGYVLIQTDNYNIETSVTGLVIILILAMVVLFAIEW 60 
                 78999999**********************************************98 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.9   3.8e+03       1       8 [.      90      97 ..      82     105 .. 0.69
   2 ?    4.4   0.4     0.052        67       3      28 ..     121     146 ..     119     150 .. 0.87
   3 ?   -2.5   0.0       8.6   1.1e+04       8      21 ..     269     284 ..     265     294 .. 0.60
   4 ?    9.1   0.0    0.0017       2.2       6      32 ..     334     360 ..     333     361 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.9
                HHHHHHHH CS
       TPR_6  1 dAlyklal 8 
                +Al+kla+
  CTQ29848.1 90 QALLKLAE 97
                45566554 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.052
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlik 28 
                 ++++a++ ++ gd ++A + ler  +
  CTQ29848.1 121 YLLAAEAAQQRGDEARANQHLERATE 146
                 678899999989**********9865 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 8.6
                 HHHHH.H.HHHHHHHH CS
       TPR_6   8 lsyrk.l.gdtdkAle 21 
                 ++ r    +d+d+A +
  CTQ29848.1 269 MAERLiEsDDHDTAQQ 284
                 3333322356666665 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYPd 32 
                 l++s+ + g++++A  a++  +k+ Pd
  CTQ29848.1 334 LGQSLMRHGEWQEASIAFRAALKQRPD 360
                 799999988*****************9 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   5.1    0.0085        11      21      75 ..      95     148 ..      83     149 .. 0.74
   2 ?   -3.2   0.0       8.6   1.1e+04      60      73 ..     185     198 ..     183     200 .. 0.65
   3 ?    7.7   0.6    0.0034       4.4       5      57 ..     330     373 ..     326     388 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0085
      TPR_12  21 eAlellekaleiarrllGpdh.pltattlrnLgrlyralgryeeAlelleealaia 75 
                  A+  ++++  ++ +    dh ++ +  +   +++ +++g+ + A ++le+a+++a
  CTQ29848.1  95 LAEGDYQQVEKLMAKN--ADHaEQPVVNYLLAAEAAQQRGDEARANQHLERATELA 148
                 5666677777777555..566466677777788888999************99985 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.6
      TPR_12  60 ryeeAlelleeala 73 
                 r+ e l+l e+a+ 
  CTQ29848.1 185 RHPEVLRLAEQAYT 198
                 56666667777664 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0034
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyra 57 
                 +++ l++ l+r g+++eA   +++al ++     pd  ++a+    L++++++
  CTQ29848.1 330 LWSTLGQSLMRHGEWQEASIAFRAALKQR-----PDAFDYAW----LADALDR 373
                 67789*********************999.....66666666....3444444 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.5     0.025        32      20      40 ..       5      25 ..       2      37 .. 0.62
   2 ?    6.3   2.0    0.0072       9.2      16      36 ..      40      61 ..      38      66 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.025
      OppC_N 20 lvilllllliaifaPliaPyd 40
                l +++ll++  +++P+ia ++
  CTQ29848.1  5 LLLFALLIAGIVLGPMIAGHQ 25
                3444555555589****9654 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0072
      OppC_N 16 Avvglvilllllliaifa.Pli 36
                 v glvi+l+l+ +++fa +++
  CTQ29848.1 40 SVTGLVIILILAMVVLFAiEWL 61
                589**************86666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1228  (0.0684924); expected 358.6 (0.02)
Passed bias filter:                      823  (0.0459033); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 2722.53
//
Query:       CTQ29849.1  [L=393]
Description: putative uroporphyrinogen III methylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-129  432.0  30.5   2.3e-129  431.5  30.5    1.1  1  HemX             HemX, putative uroporphyrinogen-III C-methyl
    2.6e-05   23.1   0.8    4.6e-05   22.3   0.8    1.3  1  Tweety           Tweety
      0.004   17.2   3.7      0.016   15.2   3.7    2.0  1  DUF1043          Protein of unknown function (DUF1043)
     0.0071   16.4   2.5      0.011   15.8   0.2    2.2  2  ETRAMP           Malarial early transcribed membrane protein 
  ------ inclusion threshold ------
      0.011   15.7   1.2      0.032   14.2   1.2    1.8  1  DUF4446          Protein of unknown function (DUF4446)
      0.021   14.2   7.2      0.042   13.2   7.2    1.4  1  Tropomyosin      Tropomyosin
      0.028   13.8   4.3          2    7.6   4.3    2.2  1  PrgH             Type III secretion system protein PrgH-EprH 
       0.08   13.3   0.5       0.34   11.3   0.5    2.1  1  PHD_3            PHD domain of transcriptional enhancer, Asx
       0.11   12.7  10.8       0.66   10.2   9.1    2.8  1  Cortex-I_coil    Cortexillin I, coiled coil
        0.2   11.7   7.7      0.047   13.7   2.2    2.7  3  DUF1664          Protein of unknown function (DUF1664)
        0.2    9.6   2.4       0.42    8.5   2.4    1.5  1  V_ATPase_I       V-type ATPase 116kDa subunit family
       0.43   10.0   4.4       0.95    8.8   4.4    1.6  1  Ppx-GppA         Ppx/GppA phosphatase family
       0.81    8.9   3.7        1.7    7.8   3.7    1.4  1  TMPIT            TMPIT-like protein
       0.89   10.0   4.5       0.88   10.0   1.3    2.7  2  FlaC_arch        Flagella accessory protein C (FlaC)
       0.96   10.0   9.1       0.58   10.7   6.2    2.3  1  KELK             KELK-motif containing domain of MRCK Ser/Thr
        1.6    8.3  11.1       0.39   10.3   3.3    2.5  2  DUF4795          Domain of unknown function (DUF4795)
        1.8    8.4   5.8       0.92    9.3   2.9    2.0  2  VIT1             VIT family
        3.1    7.3   6.9        1.9    7.9   2.5    2.4  3  Allexi_40kDa     Allexivirus 40kDa protein
        3.1    7.7   6.9         11    6.0   2.7    3.0  3  ApoO             Apolipoprotein O
        3.2    8.1   8.9       0.59   10.4   3.0    2.8  3  DUF948           Bacterial protein of unknown function (DUF94


Domain annotation for each model (and alignments):
>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  431.5  30.5  2.5e-132  2.3e-129       2     337 ..      35     364 ..      34     365 .. 0.99

  Alignments for each domain:
  == domain 1  score: 431.5 bits;  conditional E-value: 2.5e-132
        HemX   2 krgsglallallvalavgaglyylgqqqvqeltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlskvs 100
                 k++ +l+++a+++a+a g gly l++qq+++++a+++el++q+aal++++++      qk+ele  ++q+a++l+++++++e+l+kql+elqq+++ +s
  CTQ29849.1  35 KTSLALSAIAIAIAIAAGIGLYGLNKQQATRQNATTSELASQVAALQKAQEN------QKSELEGVIKQQADQLNEAKHQQETLAKQLDELQQKVAVIS 127
                 6778899*********************************************......***************************************** PP

        HemX 101 gaerkdWlLaeAdfLlklAgrkLvldqDvetAlalLksADevLaevndpsllavRralaedlkaLravnqvDrdgiilrLeqLanqvdeLpladnelde 199
                 g+++k+WlLa+AdfL+klAgrkL++dqDv+tA+alLksAD++La++ndpsl+ +Rra+++d+++L+av+qvD+dg+il+++qLanq+d+L+ladn+ d+
  CTQ29849.1 128 GSDAKTWLLAQADFLVKLAGRKLWSDQDVTTAAALLKSADASLADMNDPSLIGARRAITDDIATLSAVSQVDYDGMILKVNQLANQIDNLRLADNNDDD 226
                 *************************************************************************************************** PP

        HemX 200 apsdadnaelsdslsdWkqnleksaksflshfirirrrdksakplLaPnqdiylrenirlrLeiAilAvlrqqnelYkqsLeevstwvrsyFdtddeav 298
                 +p+dad++els+s+s+W+ nl+ks+++f+++fi++rrrd++a plLaPnqdiylrenir+rL++A++Av+r+q+e++kqsL++vstwvr+y+dtdd+++
  CTQ29849.1 227 SPMDADSDELSSSISEWRVNLQKSWQNFMDSFITVRRRDETAVPLLAPNQDIYLRENIRSRLLVAAQAVPRHQEETWKQSLDNVSTWVRAYYDTDDATT 325
                 *************************************************************************************************** PP

        HemX 299 kaflkeldeLaeqsvsvdvPdklkslslLekllekrare 337
                 kafl+e+d+L++qs++++vP++l+s++lLekl+++r+r+
  CTQ29849.1 326 KAFLDEVDKLSQQSITMTVPETLQSQALLEKLMQTRVRN 364
                 ************************************997 PP

>> Tweety  Tweety
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.8   5.1e-08   4.6e-05      52     156 ..      26     128 ..      19     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 5.1e-08
      Tweety  52 eeeskkdsccvtwsvviatlvccaaigvGfYGNsetndGvlqltyslrkanhtlagikklvseteesleekleeeLtkleeifakrtdlletlrlvqeq 150
                 ++e+kk +  ++++++++++ ++ a g+G+YG +  +   +++t+s  +    +a+++k  ++++++le  ++++  +l+e  ++++ l + l  +q++
  CTQ29849.1  26 NTEKKKAGNKTSLALSAIAIAIAIAAGIGLYGLNKQQATRQNATTS--ELASQVAALQKAQENQKSELEGVIKQQADQLNEAKHQQETLAKQLDELQQK 122
                 33444444455566666666677777899***99888777777666..556789********************************************9 PP

      Tweety 151 veevvq 156
                 v  +  
  CTQ29849.1 123 VAVISG 128
                 987765 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   3.7   1.7e-05     0.016       3      79 ..      45     123 ..      42     160 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-05
     DUF1043   3 iglvvGiiiGalilrltnsklkkqk....klekelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqhlaksseeL 79 
                 i++ +++ iG+  l    +++++q+    +l+ ++ + +++ e+qk ele  ++q a+ L++ +++ ++L ++l + +++ 
  CTQ29849.1  45 IAIAIAAGIGLYGLNK--QQATRQNattsELASQVAALQKAQENQKSELEGVIKQQADQLNEAKHQQETLAKQLDELQQKV 123
                 4555555555555554..44444440111566777778888899******************************9998887 PP

>> ETRAMP  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   1.2e-05     0.011      44      82 ..      25      60 ..       6      61 .. 0.85
   2 ?   -0.5   0.2       1.4   1.3e+03      30      51 ..      86     107 ..      69     137 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
      ETRAMP 44 dkiekkkkkkKliiistiatalallvasalGlgiykkkk 82
                ++ ekkk  +K    s++ +a+a+++a+a G+g+y  +k
  CTQ29849.1 25 ENTEKKKAGNK---TSLALSAIAIAIAIAAGIGLYGLNK 60
                56788989999...8999999999999999***998776 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.4
      ETRAMP  30 kkkekakkaikkiddkiekkkk 51 
                 ++k   +  ik+  d++++ k 
  CTQ29849.1  86 NQKSELEGVIKQQADQLNEAKH 107
                 3334444455555555555433 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.2   3.6e-05     0.032      20      76 ..      66     124 ..      43     127 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.6e-05
     DUF4446  20 llvklkklkkkykklmkgk..dgksleellkekleeveelkeeseelekeieeleeklk 76 
                 +++ +++l +++ +l+k +  ++++le ++k++ ++++e+k+++e+l k+++el++k++
  CTQ29849.1  66 QNATTSELASQVAALQKAQenQKSELEGVIKQQADQLNEAKHQQETLAKQLDELQQKVA 124
                 5677888889999998844337889******************************9975 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   7.2   4.6e-05     0.042      60     126 ..      61     127 ..      58     130 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.6e-05
  Tropomyosin  60 eealekLeeaekaadeserarKvlEnrelkdeekleeleaqlkeakeiaeeadrkyeEvarklvvve 126
                  ++a+++    ++ a++   + K+ En++ + e  ++++ +ql+eak+ +e  +++++E ++k++v+ 
   CTQ29849.1  61 QQATRQNATTSELASQVAALQKAQENQKSELEGVIKQQADQLNEAKHQQETLAKQLDELQQKVAVIS 127
                  56777777888889999999*******************************************9985 PP

>> PrgH  Type III secretion system protein PrgH-EprH (PrgH)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.3    0.0022         2     157     191 ..      99     139 ..       2     150 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0022
                 X......XXXHHHHHHHSGGGTTTEEEEEXTTSXEEEEESS CS
        PrgH 157 a......keevaelaavldddkarvelLpgrdgklYvlAkt 191
                 a      k++ ++la++ld+ +++v+++ g+d k + lA+ 
  CTQ29849.1  99 AdqlneaKHQQETLAKQLDELQQKVAVISGSDAKTWLLAQA 139
                 04455559999999999999999999999999999999975 PP

>> PHD_3  PHD domain of transcriptional enhancer, Asx
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5   0.00037      0.34       4      45 ..       3      45 ..       1      51 [. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00037
       PHD_3  4 aqqqqvallqlakqsgentPpg.neatataankCaCrLkamvi 45
                +qq+q a++ ++++++e tP+  n   + a+nk + +L a+ i
  CTQ29849.1  3 EQQNQSAVVEETREAVETTPQPeNTEKKKAGNKTSLALSAIAI 45
                689999**************8868888888********99877 PP

>> Cortex-I_coil  Cortexillin I, coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   9.1   0.00074      0.66       3      67 ..      62     123 ..      60     145 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00074
                    XXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Cortex-I_coil   3 ekerleasknelanklaglenslesekvsreelikqk.delesllasleseaaerekrlreleakl 67 
                    +  r +a+ +ela+++a+l+++ e +k   e +ikq+ d+l++     +++++   k+l el+ k+
     CTQ29849.1  62 QATRQNATTSELASQVAALQKAQENQKSELEGVIKQQaDQLNE----AKHQQETLAKQLDELQQKV 123
                    55678999**************************986256665....5667777788888888887 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   2.2   5.2e-05     0.047      37     100 ..      66     127 ..      39     133 .. 0.90
   2 ?   -1.3   0.0       2.3   2.1e+03      45      53 ..     209     217 ..     178     258 .. 0.56
   3 ?   -1.7   0.1         3   2.7e+03      60      74 ..     324     338 ..     301     367 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.2e-05
     DUF1664  37 rslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseig 100
                 ++     +++++q+  ++++ +++k +L+  i++  ++l+e k+ ++ ++++++e++++++ i+
  CTQ29849.1  66 QN--ATTSELASQVAALQKAQENQKSELEGVIKQQADQLNEAKHQQETLAKQLDELQQKVAVIS 127
                 44..34578999***********************************************99886 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.3
     DUF1664  45 svskqleqv 53 
                 ++++q++++
  CTQ29849.1 209 QLANQIDNL 217
                 333333332 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3
     DUF1664  60 tkrhLssridrvdkk 74 
                 t + + +++d++ ++
  CTQ29849.1 324 TTKAFLDEVDKLSQQ 338
                 333333333333322 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.4   0.00046      0.42      46     111 ..      63     128 ..      55     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00046
  V_ATPase_I  46 ieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlek 111
                  ++++ ++ +  ++++ l++++e++ +ele  +++  ++l+e ++++e+l k+l el+++ av++ 
  CTQ29849.1  63 ATRQNATTSELASQVAALQKAQENQKSELEGVIKQQADQLNEAKHQQETLAKQLDELQQKVAVISG 128
                 34434444444555889999999999*********************************9999864 PP

>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.4    0.0011      0.95     160     249 ..       9     104 ..       1     129 [. 0.83

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHCTTTHHHHCCCE.HHCCCCCCCHCCHHCHHHHHHCT.S.....SCEEEHHHHHHHHHHHCTSSCHHHHHSTTS-CCHHCTHHH CS
    Ppx-GppA 160 eeveaarkavekeleevkdevkkeg.ewtrlvgtsgtisalaeltelhgek.....gyeitaeeleeliekllqlkkeeelklagvsdeRadviva 249
                   ve+ r+ave  +++   e kk+g ++  +++++    a+a    l+g +      ++ t  el + ++ l +++++++ +l+gv +++ad++  
  CTQ29849.1   9 AVVEETREAVETTPQPENTEKKKAGnKTSLALSAIAIAIAIAAGIGLYGLNkqqatRQNATTSELASQVAALQKAQENQKSELEGVIKQQADQLNE 104
                 568999*******************9888899999998888888888876555677788888899999999999999***************9876 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   3.7    0.0019       1.7       4      58 ..      70     124 ..      67     146 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0019
       TMPIT   4 weelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkk 58 
                  +el++++ +l++++++ k++le + k+q +  +e+k+q++ l +  ++l++  +
  CTQ29849.1  70 TSELASQVAALQKAQENQKSELEGVIKQQADQLNEAKHQQETLAKQLDELQQKVA 124
                 579999********************************99998887777776544 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1       1.2   1.1e+03      11      33 ..      72      94 ..      68     100 .. 0.78
   2 ?   10.0   1.3   0.00098      0.88       4      37 ..      90     123 ..      88     128 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.2
   FlaC_arch 11 klsteletvkkeneelsksveel 33
                +l ++++ ++k +e+ ++++e +
  CTQ29849.1 72 ELASQVAALQKAQENQKSELEGV 94
                67788899999999888888864 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00098
   FlaC_arch   4 elEnklsklsteletvkkeneelsksveelkenV 37 
                 elE  +++   +l+ +k ++e l k+++el+++V
  CTQ29849.1  90 ELEGVIKQQADQLNEAKHQQETLAKQLDELQQKV 123
                 78888999999*********************99 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   6.2   0.00064      0.58      15      60 ..      83     125 ..      60     134 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00064
        KELK  15 EkeelqkelaeaqErlksqkkeLkdaisqrklamqefsevneklse 60 
                  +   +++++e++  +k+q+ +L +a++q+++ ++++ e+++k++ 
  CTQ29849.1  83 AQ---ENQKSELEGVIKQQADQLNEAKHQQETLAKQLDELQQKVAV 125
                 33...45677788889***************************975 PP

>> DUF4795  Domain of unknown function (DUF4795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.3   0.00044      0.39      20      70 ..      67     118 ..      12     128 .. 0.87
   2 ?    2.4   0.9      0.12     1e+02      85     136 ..     227     337 ..     205     365 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00044
     DUF4795  20 qeelekleekvkelekrledkekklea.lkkqieelekvkadkeeveeelae 70 
                  +  ++l ++v+ l+k +e+++++le+ +k+q+++l+++k  +e+++++l+e
  CTQ29849.1  67 NATTSELASQVAALQKAQENQKSELEGvIKQQADQLNEAKHQQETLAKQLDE 118
                 456778999****************9726889************99999986 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.12
     DUF4795  85 q.fDeakkeLekmleellekle.................................................eqeealkkaldtLq.........eelke 124
                   +D+  +eL+  ++e +  l+                                                  qee +k+ ld+++         ++ ++
  CTQ29849.1 227 SpMDADSDELSSSISEWRVNLQkswqnfmdsfitvrrrdetavpllapnqdiylrenirsrllvaaqavprHQEETWKQSLDNVStwvrayydtDDATT 325
                 256666677777665555555555555555666666666666667777777777777777777888888889999999999999955555555544444 PP

     DUF4795 125 kldrlelepLke 136
                 k   +e+++L++
  CTQ29849.1 326 KAFLDEVDKLSQ 337
                 444555555555 PP

>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.9     0.001      0.92      39     116 ..      42     121 ..       3     173 .. 0.82
   2 ?   -1.1   0.0       1.6   1.4e+03      66     112 ..     324     370 ..     296     379 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
        VIT1  39 aellAGaiSMgiGeYlsvkserdlekaerkreeeeleedpe..egeaeelaeilearglseelaqevaaellknpdalle 116
                 a ++A ai+ giG Y   k++    +a++++   ++++ ++  e+++ el+ +++++  + ++a++  ++l+k+ d+l++
  CTQ29849.1  42 AIAIAIAIAAGIGLYGLNKQQATRQNATTSELASQVAALQKaqENQKSELEGVIKQQADQLNEAKHQQETLAKQLDELQQ 121
                 45688899************99999999999888888877654556999*****99998888888888999998888655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
        VIT1  66 erkreeeeleedpe.egeaeelaeilearglseelaqevaaellknpd 112
                 ++k+  +e+++ ++ +     + e l+++ l e+l q+ +++l+++p 
  CTQ29849.1 324 TTKAFLDEVDKLSQqSI-TMTVPETLQSQALLEKLMQTRVRNLMAQPA 370
                 44444455555554233.467788888888888888888888887775 PP

>> Allexi_40kDa  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.5    0.0021       1.9      68     141 ..      58     130 ..      53     138 .. 0.77
   2 ?    0.5   0.0       0.4   3.6e+02      60     109 ..     199     248 ..     179     275 .. 0.68
   3 ?   -3.2   0.0       5.4   4.8e+03     109     109 ..     346     346 ..     302     383 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0021
  Allexi_40kDa  68 lnpvsllsqttlLselrdalrtltklldklksvekklelsa.etasdskllkklesietsleelhakldelssse 141
                   ln+ +++ q+++ sel +++ +l+k  ++ ks  + + +++ ++ ++    ++ e++ ++l+el++k+ ++s s 
    CTQ29849.1  58 LNKQQATRQNATTSELASQVAALQKAQENQKSELEGVIKQQaDQLNEA--KHQQETLAKQLDELQQKVAVISGSD 130
                   7888899999999**********9999888877666554440444444..57889999*********98877665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.4
  Allexi_40kDa  60 dvdsiinklnpvsllsqttlLselrdalrtltklldklksvekklelsae 109
                   d d +i k+n+++   ++  L++  d+   ++ + d+l+s  ++ + + +
    CTQ29849.1 199 DYDGMILKVNQLANQIDNLRLADNNDDDSPMDADSDELSSSISEWRVNLQ 248
                   45556666666666666666666666666666666666666655555544 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.4
  Allexi_40kDa 109 e 109
                   e
    CTQ29849.1 346 E 346
                   1 PP

>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   2.7     0.012        11       7      61 ..      64     118 ..      56     126 .. 0.85
   2 ?    2.1   0.0       0.2   1.8e+02      10      46 ..     230     266 ..     206     273 .. 0.84
   3 ?   -1.7   0.1       2.9   2.6e+03      25      56 ..     312     332 ..     292     358 .. 0.48

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.012
        ApoO   7 tpseeptdrLeegvrslRkslepytsavqdelnkvkskvetaeqsvtdtiasLke 61 
                 t++++ t++L+++v+ l k+ e++ s+++  ++++ +++++a+++ ++  ++L e
  CTQ29849.1  64 TRQNATTSELASQVAALQKAQENQKSELEGVIKQQADQLNEAKHQQETLAKQLDE 118
                 34468999**********************************9998887777766 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.2
        ApoO  10 eeptdrLeegvrslRkslepytsavqdelnkvkskve 46 
                  ++ d+L +++++ R +l++ ++ + d++ +v+ + e
  CTQ29849.1 230 DADSDELSSSISEWRVNLQKSWQNFMDSFITVRRRDE 266
                 56789999************99999999888877655 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.9
        ApoO  25 kslepytsavqdelnkvkskvetaeqsvtdti 56 
                  ++  y+++            + + + + d++
  CTQ29849.1 312 TWVRAYYDTD-----------DATTKAFLDEV 332
                 2222222222...........22222222222 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.0   0.00066      0.59       3      79 ..      40     121 ..      38     129 .. 0.72
   2 ?   -1.0   0.1       2.5   2.2e+03      48      48 ..     199     199 ..     156     221 .. 0.52
   3 ?   -2.5   0.0       7.1   6.3e+03      43      52 ..     326     335 ..     303     352 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00066
      DUF948   3 glIaAiAFvvLviflivvllkl.....kktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavad 79 
                 +  +AiA+++ + +  + l+k      + t +e+a++++ l+k  ++   e+e+++++  + l++ +++ e++ +  +++++
  CTQ29849.1  40 LSAIAIAIAIAAGIGLYGLNKQqatrqNATTSELASQVAALQKAQENQKSELEGVIKQQADQLNEAKHQQETLAKQLDELQQ 121
                 5568888888888888888888779988899999999999997777777777777777777777777766666555555444 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.5
      DUF948  48 e 48 
                 +
  CTQ29849.1 199 D 199
                 1 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 7.1
      DUF948  43 dpilkevedl 52 
                 ++ l+ev++l
  CTQ29849.1 326 KAFLDEVDKL 335
                 2223333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2872  (0.160187); expected 358.6 (0.02)
Passed bias filter:                     1076  (0.0600145); expected 358.6 (0.02)
Passed Vit filter:                       157  (0.00875676); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 2609.86
//
Query:       CTQ29850.1  [L=246]
Description: uroporphyrinogen III synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-39  133.7   0.0      7e-39  133.5   0.0    1.0  1  HEM4            Uroporphyrinogen-III synthase HemD
  ------ inclusion threshold ------
        0.2   10.3   0.0       0.24   10.1   0.0    1.2  1  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase


Domain annotation for each model (and alignments):
>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.5   0.0   7.8e-43     7e-39       2     231 ..      14     242 ..      13     243 .. 0.96

  Alignments for each domain:
  == domain 1  score: 133.5 bits;  conditional E-value: 7.8e-43
                 HHHHHHHHTTEEEEE---EECCECCHHHHHHHHHT.....--SEEEE--HHHHHHHHHHHHHTT---HHHHHCSEEESSHHHHHHHHHTT---SEE-.. CS
        HEM4   2 elaealearGaeplelPlieiepaedraelraalddleagkydwliftSanavealfealkreeedvkalaslkvaavGpaTaraLeelglrvdlvpse 100
                 +l+ +l+a G  ++ +Plie++p ++  +l +al +l     d+l++ S++ave+ +++l+  + ++ ++ s +++a+G++Ta aL+    ++ ++p +
  CTQ29850.1  14 ALVSRLRAMGRVAWSFPLIEFTPGRELPALGDALARLG--PDDLLFALSQHAVEFAHARLQ--QQGLPWPTSPRYFAIGRTTALALHTVSGQHIHYPLD 108
                 78999*****************************9999..99***************9999..************************************ PP

                 SSSHHHHGG..GS-.---EEEEEE-SS.S--HHHHHHHHHTTEEEEEE-SEEEEE-HHHHHHHHHHHHTT--SEEEESSHHHHHHHHHH-S-HH..HHH CS
        HEM4 101 egtaegLae..elaeslagkrvlllrgeiarddlaegLeergaevdevevYetvpaeeepeelkealkagevdavvftSpstvrnllellkdeg..del 195
                  + +e L++  el+ ++agk+ l+lrg+ +r+ l ++L erga+v+ +e+Y++++ +++ +e   +++++ v  +v+tS +++++l++l+++    ++l
  CTQ29850.1 109 REISEVLLQlpELQ-NIAGKNALILRGNGGRELLGATLTERGARVTFCECYQRSAKHYDGAEEAMRWQSRGVTTLVVTSGEMLQQLWSLIPQWYreQWL 206
                 *******7722555.9999************************************************************************8779**** PP

                 CTSEEEEESHHHHHHHHHTT---SEEETS--HHHHH CS
        HEM4 196 kevkvaaiGptTaealkklglkvdvvaeeptaeglv 231
                  +++v++++++ a ++++lg++ + va+ +++++l+
  CTQ29850.1 207 LHCRVVVVSERLALQARELGWQEIQVADSADNDALL 242
                 *********************************997 PP

>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   2.7e-05      0.24     187     321 ..      46     175 ..       9     199 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 2.7e-05
                     HHGGGGG-SEEEEESHHCHHHHHHHHHHHH---EEEEE-SSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEECSS CS
  Oxidored_nitro 187 elraagraklnlvlcprsanyaaelleekfgvpyiklvspiGleatdaflrelakllgkevaperiaeerarlldaladyheylagkrvaiygdp 281
                      l+++g  +l ++l++++ + a + l+++ g p+ + +  + +  t+a+  +l  ++g+ +    + +e +++l +l +  + +agk+++i  + 
      CTQ29850.1  46 ALARLGPDDLLFALSQHAVEFAHARLQQQ-GLPWPTSPRYFAIGRTTAL--ALHTVSGQHI-HYPLDREISEVLLQLPE-LQNIAGKNALILRGN 135
                     57788888999999999999677777777.9999999999999999988..89999**999.9999**99999999999.5699*********** PP

                     HHHHHHHHHHHHHT-EEEEEEESSS-HHHHHHHHHHS.TT CS
  Oxidored_nitro 282 drvvalarllkelGmevvaagtetahrddeerlkaeleeg 321
                          l + l+e G++v  + ++ ++++ ++++++ ++ +
      CTQ29850.1 136 GGRELLGATLTERGARVTFCECYQRSAKHYDGAEEAMRWQ 175
                     99999*************************8777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1856.46
//
Query:       CTQ29851.1  [L=318]
Description: porphobilinogen deaminase (PBG) (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-82  275.1   0.0    3.8e-82  274.7   0.0    1.1  1  Porphobil_deam   Porphobilinogen deaminase, dipyromethane cof
    5.7e-24   84.3   0.1    1.1e-23   83.4   0.1    1.5  1  Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain


Domain annotation for each model (and alignments):
>> Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofactor binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.7   0.0   4.2e-86   3.8e-82       1     202 [.      11     217 ..      11     219 .. 0.96

  Alignments for each domain:
  == domain 1  score: 274.7 bits;  conditional E-value: 4.2e-86
  Porphobil_deam   1 irigtRkSkLAlaqaelvaeaLke...eeeveivtiktkGDkildkpLakiggkglFtkeleeaLlegeidlaVhSlKDlptelpeglelaavlk 92 
                     ++i+tR+S+LAl+qa++v+++L++     +ve+v++ t+GD ild+pLak+ggkglF+kele a+leg++d+aVhS+KD+p+e pegl l+++++
      CTQ29851.1  11 LKIATRQSPLALWQAQYVKARLEQahpGLKVELVPMVTRGDVILDTPLAKVGGKGLFVKELELAMLEGRADIAVHSMKDVPVEFPEGLGLVTICE 105
                     69********************764445559**************************************************************** PP

  Porphobil_deam  93 redprDvlvvks..sleelpegavvgTsSlRRkaqlkklrpdlevkdlRGnvdtRlrkldegeydaiiLAaAGLkRlgleerisevlspeellpa 185
                     r+dprD++v ++  s++elp+g+vvgTsSlRR++ql + rpdl +++lRGnv tRl+kld+geydaiiLAaAGLkRl+le ri++ lspe++lpa
      CTQ29851.1 106 RDDPRDAFVSNRyaSIDELPAGSVVGTSSLRRQCQLAATRPDLAIRSLRGNVGTRLSKLDNGEYDAIILAAAGLKRLQLEARIRQPLSPEQSLPA 200
                     *********744789********************************************************************888********* PP

  Porphobil_deam 186 vgQGalavevrkedeel 202
                     vgQGa+++e+r +d+++
      CTQ29851.1 201 VGQGAVGIECRLDDAWT 217
                     ************99876 PP

>> Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.1   1.2e-27   1.1e-23       2      74 ..     231     300 ..     230     301 .. 0.96

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 1.2e-27
                      HHHHHHHHHHHHTT--TTSSEEEEEEEETTE.EEEEEEEE-TTS..S-EEEEEEEE-GGGHHHHHHHHHHHHH CS
  Porphobil_deamC   2 levlaERallkeLeGGCsvPiGvyaeveaneelkLkglvlsldglksaveeaeakgeleeaeelGkklaeell 74 
                       +v+aERa++++LeGGC+vPiG+yae++++e l+L++lv+++dg++  + + e++g+ e+ae+lG++laeell
       CTQ29851.1 231 VRVRAERAMNTRLEGGCQVPIGSYAELKDGE-LWLRALVGAPDGSQ--LVRGERRGPAEQAEALGISLAEELL 300
                      589*************************999.************66..********99*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2468.26
//
Query:       CTQ29852.1  [L=876]
Description: adenylate cyclase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     4e-253  841.5   0.0   4.8e-253  841.2   0.0    1.0  1  Adenylate_cycl  Adenylate cyclase, class-I
    4.1e-84  281.5   0.0    1.8e-80  269.6   0.0    2.3  2  Adenyl_cycl_N   Adenylate cyclase NT domain


Domain annotation for each model (and alignments):
>> Adenylate_cycl  Adenylate cyclase, class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  841.2   0.0  5.3e-257  4.8e-253       1     600 [.     254     852 ..     254     853 .. 0.98

  Alignments for each domain:
  == domain 1  score: 841.2 bits;  conditional E-value: 5.3e-257
  Adenylate_cycl   1 ewldlGglsklsaeEYfGaslWqLYKgidsPyKavlKilLlEaYaseYPntkllskelkqkllegekvsvrlDaYllllekvteYLekkndakRL 95 
                     ewldlGgls+lsaeEYfGaslWqLYK+idsPyKavlK+lLlEaY++eYPn +ll+k++kq+l++ge vs  lD+Y+++le+vt+YL++++d++RL
      CTQ29852.1 254 EWLDLGGLSSLSAEEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYPNNRLLAKDIKQRLHDGEIVSFGLDPYCMMLERVTTYLQAIEDETRL 348
                     8********************************************************************************************** PP

  Adenylate_cycl  96 dlvrrcFYlKveeklseeekekakewrreklkeLvkqWewseelieeldnrekWkikqvkkaneellelLllsYrnLiqfarknkisesispedi 190
                     dlvrrcFYlKv+ekls+e  ++   wrre++++Lv+ W+w+e+++ +ldnr++Wki++v+ka++ell+++++sYrnLi+far+n++s s sp+di
      CTQ29852.1 349 DLVRRCFYLKVCEKLSRE--RACVGWRREVVSQLVNAWGWDEKRLMMLDNRANWKIDEVRKAHNELLDAMMQSYRNLIRFARRNNLSVSASPQDI 441
                     ****************44..5788*********************************************************************** PP

  Adenylate_cycl 191 giLtRkLyaaFeelpgkvellnpqisedlsekdltfievkenravkkgwylynqapkskellgeraveyaksliklvaWayfNgllteetqlhlv 285
                     g+LtRkLyaaFe+lpgkv+l+npqis+dlse++ltfi+v+ +ra++ gwylyn+ap+ +++++++++ey+++l+klvaWa fNgllt++t+l++ 
      CTQ29852.1 442 GVLTRKLYAAFEALPGKVTLVNPQISPDLSEPNLTFIHVPPGRANRTGWYLYNRAPDMESIISHQPLEYNRYLNKLVAWAWFNGLLTSRTRLFIK 536
                     *********************************************************************************************** PP

  Adenylate_cycl 286 sesvkleskkLsqlvkdLrevfkvkapkvtkedlakpceirklvliiNlekdptkelseqevkvdiqnsdlfslgsekesLvgsvdliyrnsWnE 380
                     +++  ++ +kL+++v+d++++f+ + p++t ++l++pceir+l++i+Nle dpt+ +++q v++d+++ d+fs+g+e+++L+gsvdl+yrnsWnE
      CTQ29852.1 537 GNG-IVDLAKLQEMVADVSHHFPLRLPAPTPKALYSPCEIRHLAIIVNLEYDPTAAFRNQVVHFDFRKLDVFSFGEEQKCLIGSVDLLYRNSWNE 630
                     999.55667************************************************************************************** PP

  Adenylate_cycl 381 irtlhfegeealleaLkvilnkihrgsaepesvevfcyskrlrselrnaveqlvkecielqlk.tkeeseqvktlkvggkkyqlffeergvslqe 474
                     +rtlhf+ge+a++eaLk+il+k+h+++a+p+svevfcys++lr  +r++v+q+++eciel+l+ t++++ ++k+l+v+g++++lffe+ +vs+q+
      CTQ29852.1 631 VRTLHFNGEQAMIEALKTILGKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQMISECIELRLSsTRQDTGRFKALRVSGQTWGLFFERLNVSVQK 725
                     **************************************************************967788889************************ PP

  Adenylate_cycl 475 Leeakelyksiskkklselpraeleeeeklkvpeiidefasegllqfffedne...egfnvYildekneleiykqcsgskeelvkeinrlyasee 566
                     Le+a e+y +is++kl+ l+ +   e+++ k+p+++d faseg++qfffed +   +gfn+Yilde+n+ e+y++c+gskeelv++++r+y+s++
      CTQ29852.1 726 LENAIEFYGAISHNKLHGLSVQV--ETNHVKLPAVVDGFASEGIIQFFFEDADnndSGFNIYILDESNRAEVYHHCEGSKEELVRDVSRFYSSSH 818
                     *****************998876..69999*******************986544689************************************* PP

  Adenylate_cycl 567 skkekeskiinFnlPQFYqlvkeegelkivpfks 600
                     ++ +  s++inFnlPQFYq+v+++g+++++pf++
      CTQ29852.1 819 DRFTYGSSFINFNLPQFYQIVEVDGRTQVIPFRT 852
                     ********************************86 PP

>> Adenyl_cycl_N  Adenylate cyclase NT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.6   0.0     2e-84   1.8e-80       2     198 ..      31     226 ..      30     227 .. 0.99
   2 !    9.6   0.0   8.7e-05      0.78      12      66 ..     721     775 ..     716     794 .. 0.89

  Alignments for each domain:
  == domain 1  score: 269.6 bits;  conditional E-value: 2e-84
  Adenyl_cycl_N   2 lktlkkrldelnqlrleralaalseeqqevlellplLlhvnhpelpgyveedtpagiaefelskkqkkllkelarsaeekekkekakeaaieglyl 97 
                    ++tlk+rld++nqlr++ralaa+ +++q+v++llp+Llh++hp +pgy+++++p gi+ ++++++q+++l+el+ +   ++++  + e +i+g+y+
     CTQ29852.1  31 IETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHYHHPLMPGYLDGNVPRGICLYTPDETQRHYLEELELHRGMQTQEPPKGELPITGVYS 126
                    799**************************************************************************9999999999********* PP

  Adenyl_cycl_N  98 mGStgsiaqsekSDlDiWvchrselsaeelelLekKleliekwaeelgvevnfFlideekfrkkeeksslteessGsaqhlLLldEFYRtairlAG 193
                    mGSt+s++qs++SDlDiWvch+++l++ee++lL++K++l+e+wa++lgvev+fFlide++fr+ +e+ sl  e++Gs+qh+LLldEFYRta+rlAG
     CTQ29852.1 127 MGSTSSVGQSCSSDLDIWVCHQAWLDSEERQLLQRKCSLLESWAASLGVEVSFFLIDENRFRH-NESGSLGGEDCGSTQHILLLDEFYRTAVRLAG 221
                    ***************************************************************.8******************************* PP

  Adenyl_cycl_N 194 krllW 198
                    kr+lW
     CTQ29852.1 222 KRILW 226
                    ***** PP

  == domain 2  score: 9.6 bits;  conditional E-value: 8.7e-05
  Adenyl_cycl_N  12 lnqlrleralaalseeqqevlellplLlhvnhpelpgyveedtpagiaefelskk 66 
                    +  ++le+a +   + +++ l+ l++ +++nh++lp+ v++ ++ gi++f  +++
     CTQ29852.1 721 VSVQKLENAIEFYGAISHNKLHGLSVQVETNHVKLPAVVDGFASEGIIQFFFEDA 775
                    55689999999999999999******************************88765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 6162.76
//
Query:       CTQ29853.1  [L=106]
Description: frataxin, iron-binding and oxidizing protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-30  105.4   0.1    1.7e-30  105.3   0.1    1.0  1  Frataxin_Cyay  Frataxin-like domain


Domain annotation for each model (and alignments):
>> Frataxin_Cyay  Frataxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.3   0.1   9.4e-35   1.7e-30       1     107 [.       1     102 [.       1     103 [. 0.93

  Alignments for each domain:
  == domain 1  score: 105.3 bits;  conditional E-value: 9.4e-35
                    -HHHHHHHHHHHHHHHHHHHH.HHHHH--CTS.SEEEETTEEEEEETTS-EEEEEEEGGGTEEEEEES.SEEEEEEEET.TEEEETTTT-BHHHHH CS
  Frataxin_Cyay   1 lsdeeyhkladelldsleekleelaeeaeedeldveyssgvLtiefekkgtyvinkqppnkqIWlsspisgpkrfdydekgeWiskrdgseLkelL 96 
                    ++d+e+h+lad+l+ ++ee+l++++ +  +d+ d+e+++gvLti+fe++++++in+q+p +q+Wl+++ +g+++fd++  +eWi++r+g+++++lL
     CTQ29853.1   1 MNDSEFHRLADSLWMTIEERLDDWDGD--SDI-DCEINGGVLTISFENGSKIIINRQEPLHQVWLATK-QGGYHFDLKG-DEWICDRSGETFWDLL 91 
                    89*******************888766..455.88888******************************.********98.79************** PP

                    HHHHHHHHSS- CS
  Frataxin_Cyay  97 eeelskalgee 107
                    e++ s+++ge+
     CTQ29853.1  92 EQAASQQAGET 102
                    *******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 842.66
//
Query:       CTQ29854.1  [L=74]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-09   37.2   3.9    2.4e-09   36.8   3.9    1.2  1  LPAM_2    Prokaryotic lipoprotein-attachment site


Domain annotation for each model (and alignments):
>> LPAM_2  Prokaryotic lipoprotein-attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   3.9   1.3e-13   2.4e-09       1      23 []      14      36 ..      14      36 .. 0.97

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.3e-13
      LPAM_2  1 lllllallllLaGCGqKGPLYlP 23
                +l++l++ l+L+GCG+KGPLY+P
  CTQ29854.1 14 TLAVLFAILSLTGCGLKGPLYFP 36
                799*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 588.09
//
Query:       CTQ29855.1  [L=274]
Description: diaminopimelate epimerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-70  234.2   0.4      1e-34  119.3   0.0    2.0  2  DAP_epimerase  Diaminopimelate epimerase
    0.00014   21.5   0.0    0.00018   21.1   0.0    1.1  1  PhzC-PhzF      Phenazine biosynthesis-like protein
  ------ inclusion threshold ------
      0.067   13.5   0.0       0.13   12.6   0.0    1.5  1  DUF4968        Domain of unknown function (DUF4968)


Domain annotation for each model (and alignments):
>> DAP_epimerase  Diaminopimelate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.0   1.7e-38     1e-34       1     120 [.       3     123 ..       3     124 .. 0.98
   2 !  113.5   0.2   1.1e-36   6.4e-33       2     120 ..     152     266 ..     151     267 .. 0.97

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 1.7e-38
                    EEEECSSEEEEEEECCTTCSSHHHHHHHHHHHTTTTSTT-SEEEEEE..EEETTEEEEEEEETTTEEESTTHCCHHHHHHHHHCTTS-S-SEEEEE CS
  DAP_epimerase   1 fakshGnpndvvvvddveaelvleaelvaalcdreagpgadgvlfvk..psgeediklryfnrdgseaemCGnGvrvfaaylreggletkkevtve 94 
                    f+k+hG++nd++vvd v +++++ +el+++l+dr+ g+g d++l+v+   +++ d+++r+fn+dgse ++CGnG+r+fa+++r +gl++k++++v+
     CTQ29855.1   3 FSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEppYDPDLDFHYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVS 98 
                    79*********************************************9888999****************************************** PP

                    ETTEEEEEEEECTTSSEEEEEE--EE CS
  DAP_epimerase  95 tlgGeleievkddgekvkvdmGkasl 120
                    t +G ++++v++d+  v+v+mG++++
     CTQ29855.1  99 TANGRMVLSVTEDDL-VRVNMGEPNF 123
                    *************98.*******986 PP

  == domain 2  score: 113.5 bits;  conditional E-value: 1.1e-36
                    EEECSSEEEEEEECCTTCSSHHHHHHHHHHHTTTTSTT-SEEEEEEEEETTEEEEEEEETTTEEESTTHCC.HHHHHHHHHCTTS-S-SEEEEEET CS
  DAP_epimerase   2 akshGnpndvvvvddveaelvleaelvaalcdreagpgadgvlfvkpsgeediklryfnrdgseaemCGnG.vrvfaaylreggletkkevtvetl 96 
                    ++s+Gnp++v+ vddv+++ v++  l++ ++++e++p++ ++ f++++g+++i+lr+++r+++e+++CG+G ++++a+ +++g l+  ++v+ve++
     CTQ29855.1 152 VVSMGNPHCVIQVDDVDTAAVET--LGPVMESHERFPERANIGFMQVVGRSHIRLRVYERGAGETQACGSGaCAAVAVGIQQGLLA--ETVRVELP 243
                    689********************..***********************************************************77..******** PP

                    TEEEEEEEECTTSSEEEEEE--EE CS
  DAP_epimerase  97 gGeleievkddgekvkvdmGkasl 120
                    gG l i +k  g+   +++G+a +
     CTQ29855.1 244 GGRLDIAWKGPGQP-LFMTGPAAH 266
                    ************96.******976 PP

>> PhzC-PhzF  Phenazine biosynthesis-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   3.1e-08   0.00018      46     225 ..      51     223 ..      44     242 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.1e-08
                 -SSTTSSEEEEEE-S.SSEES--HHHHHHHHHHHHHHCT-S-SCEEEEEETTEEEEE.EEEEETCEECCEEEEE-SEEEEEE-HHHHHHHHHHCCTSGG CS
   PhzC-PhzF  46 psdekarfrlRyFTP.vaEvdlcGHatlasahalaekglvasaetveletkaGilpvkslkekddgeellielkfPvikteevssedlallakllklaa 143
                 p d + +f  R+F +  +Ev  cG      a+++  kgl+ ++  + ++t  G++ +    +  ++  +++ +  P +++++v   + ++ +  +  aa
  CTQ29855.1  51 PYDPDLDFHYRIFNAdGSEVSQCGNGARCFARFVRLKGLT-NKRDIRVSTANGRMVL----SVTEDDLVRVNMGEPNFEPSQVPFRANKAEKTYIMRAA 144
                 44778899*****87469*******988888888888875.99************98....3556667899*************999888888888888 PP

                 -TTS-BEEEESSSEEEEEEBST..CCHHHH----HHHHHHHCT-EEEEEEEETTTSSCCEEEEEEEEGGGTEEEESS-HHHHHH CS
   PhzC-PhzF 144 qkalpiavkstglekvivplss..eeavaelspdlaeeikkcpkkgvivtaaaeagskkdfhsRmFaPklGivEDpvtGsAsga 225
                 ++++   v s g+ + ++++ +   +av+ l p + e  + +p+++ i + ++   s  +++ R +    G  E  ++Gs+++a
  CTQ29855.1 145 EQTVLCGVVSMGNPHCVIQVDDvdTAAVETLGPVM-ESHERFPERANIGFMQVVGRS--HIRLRVY--ERGAGETQACGSGACA 223
                 999*****************97225789*******.**********98887666554..4446666..67888*********98 PP

>> DUF4968  Domain of unknown function (DUF4968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.2e-05      0.13       2      37 ..      91     125 ..      90     148 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
     DUF4968   2 tgntvefttenaelritvltddiiRvryapdgefee 37 
                 ++++++++t n+++ ++v +dd++Rv ++   +fe+
  CTQ29855.1  91 NKRDIRVSTANGRMVLSVTEDDLVRVNMGEP-NFEP 125
                 78899*********************98854.4544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2260.91
//
Query:       CTQ29856.1  [L=235]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-78  261.7   0.5    6.7e-78  261.5   0.5    1.0  1  DUF484    Protein of unknown function, DUF484


Domain annotation for each model (and alignments):
>> DUF484  Protein of unknown function, DUF484
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.5   0.5   3.7e-82   6.7e-78       3     224 ..      12     232 ..      10     233 .. 0.98

  Alignments for each domain:
  == domain 1  score: 261.5 bits;  conditional E-value: 3.7e-82
      DUF484   3 kdaldaedVadyLrqhpeFfkqhpelveeLrlphqaantvsLvevqlararerireleeelaalmelAraNerlfarllalqldlldarsledvlrrle 101
                 + al +++V+dyL qhpeFf++++  ve+Lr+ph++++t+sLve+++ rar++i++lee+++ lme+A aNe+lf+rll+lq  l +a+sl+d+l+rl+
  CTQ29856.1  12 ASALNDRAVVDYLLQHPEFFIRNAAQVEHLRVPHPVRGTISLVEWHMMRARNHIHVLEENMSLLMEQAVANESLFQRLLQLQTRLAAAESLDDMLNRLH 110
                 6899*********************************************************************************************** PP

      DUF484 102 asarelflaaavrlllfhdskvk.gesatdevilsskaleelrvdrlggekpilgrlrqaekllLfgdeaeeigSvavvlLssqaplgllafgSrDpeh 199
                 ++arel+la+ + ++lf+d ++  ++s+ ++++l+++a+e++r++rlg+ +++lg+l+ +e+l++++ ea++igSva++lL+ ++  g+++f+SrD++h
  CTQ29856.1 111 RWARELGLAG-ATVRLFPDCWRLgAPSKFTHLALNRQAFEPIRIQRLGQARHYLGPLNGPELLVVLP-EAKAIGSVAISLLGGDNAPGVMLFSSRDAQH 207
                 **********.************99*****************************************9.**************9999************* PP

      DUF484 200 fqpgmgTlfLrhlaevlarllerws 224
                 +qp +gT++L+++a++l+ llerw+
  CTQ29856.1 208 YQPVQGTQLLQEIAQMLPGLLERWI 232
                 ************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 1985.44
//
Query:       CTQ29857.1  [L=300]
Description: site-specific tyrosine recombinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-53  178.5   0.0    1.3e-52  178.1   0.0    1.2  1  Phage_integrase  Phage integrase family
    6.4e-23   80.9   0.1    1.5e-22   79.7   0.1    1.6  1  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
    0.00033   21.1   0.0     0.0008   19.8   0.0    1.7  1  Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
  ------ inclusion threshold ------
       0.17   10.8   0.1       0.23   10.3   0.1    1.1  1  DUF3435          Protein of unknown function (DUF3435)


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.1   0.0   2.8e-56   1.3e-52       2     171 ..     115     282 ..     114     283 .. 0.98

  Alignments for each domain:
  == domain 1  score: 178.1 bits;  conditional E-value: 2.8e-56
                      HHHHHHHHHHHHCCGC.HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHHHHHHHHHHHHCHCCTTT CS
  Phage_integrase   2 vltedeverllaalee.slkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseealellkellskaleeaeks 94 
                      +++ d+v+rll++  + +l++rd+++le++y+ GlR sEl++L++k+ldle g+++v   +gKgsker +p++++a+ +++++l+ +     ++
       CTQ29857.1 115 NIDVDDVNRLLDIDLNdPLAVRDRAMLEVMYGAGLRLSELVNLDIKHLDLESGEVWV---MGKGSKERRLPIGRNAVAWIEHWLDLRGLFGTDD 205
                      57889********9888****************************************...********************************** PP

                      SBSSBETTSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCCH CS
  Phage_integrase  95 ellfaskrgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthvak 171
                      ++lf+sk gk++s+++v+k+f +++ ++g++++++pH+lRhsfat++le+  dlr vq+llGH+++sttqiYth+++
       CTQ29857.1 206 DALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDF 282
                      **************************************************************************986 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.1   3.3e-26   1.5e-22       2      84 .]      11      93 ..      10      93 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 3.3e-26
                     HHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHH.TS--TTT--HHHHHHHHHS----------HHHHHHHHHHHHHHHHHTT CS
  Phage_int_SAM_1  2 eqfleyLikerglspnTlraYrrdLrrflkflaergkesleqlttedvraflaeleeeglsatslarrlsalrsFfqflvreg 84
                     ++fl++L +er+lsp Tl++Y+r+L++++  ++e+g +s+ q++++ vr+f ++++++gl  +sla+rlsalrsFf++lv +g
       CTQ29857.1 11 ARFLRHLGVERQLSPITLLNYQRQLDALIALADEAGLKSWSQCDAAQVRSFAVRSRRAGLGPASLALRLSALRSFFDWLVGQG 93
                     79*****************************************************************************9775 PP

>> Phage_int_SAM_4  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.8e-07    0.0008       4      81 ..      12      92 ..       6      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.8e-07
  Phage_int_SAM_4  4 rfrealrl.aglserTiksYlsaikrflrflkkk...apeeltkedieaYlnyLanerklsastqknalnalsffykkvler 81
                     rf+++l + ++ls+ T  +Y++++  +++  ++    + ++++ ++++++    + +  l +++    l+al++f+ +++++
       CTQ29857.1 12 RFLRHLGVeRQLSPITLLNYQRQLDALIALADEAglkSWSQCDAAQVRSFAVRSR-RAGLGPASLALRLSALRSFFDWLVGQ 92
                     4555555599*******************99843454999**********99988.899********************986 PP

>> DUF3435  Protein of unknown function (DUF3435)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   5.2e-05      0.23     170     235 ..     214     277 ..     203     296 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.2e-05
     DUF3435 170 dealtastlnsrlkrlgeiagfeepitpYklRrgaaka.lneSgevseaqrnlilqHassrtFlkhY 235
                  ++++a+ +++r  + g  +g++  ++p+klR   a + l++Sg+      + +l+Ha+ +t  + Y
  CTQ29857.1 214 GKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHmLESSGDLRGV--QELLGHANLSTT-QIY 277
                 57899***************************99776615555554433..347899888775.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2284.36
//
Query:       CTQ29858.1  [L=238]
Description: putative hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-14   54.4   0.0    3.8e-14   53.2   0.0    1.6  1  HAD_2            Haloacid dehalogenase-like hydrolase
      3e-11   44.0   0.0    4.4e-11   43.5   0.0    1.3  1  Hydrolase        haloacid dehalogenase-like hydrolase
    2.7e-10   40.1   0.0      7e-10   38.8   0.0    1.7  1  Hydrolase_like   HAD-hyrolase-like
  ------ inclusion threshold ------
       0.17   11.5   0.1        5.4    6.6   0.0    2.8  3  PGP_phosphatase  Mitochondrial PGP phosphatase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   8.6e-18   3.8e-14       3     178 .]      15     207 ..      13     207 .. 0.88

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 8.6e-18
       HAD_2   3 FDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee....................kieellrkyneekkk..kevk 79 
                 FDlD+Tl+d +++i  +++e l+     ++s+++++ +   +lr++l  ++++   +                       +   +  +e+  +    v 
  CTQ29858.1  15 FDLDDTLYDNRPVIDRTMHESLAFVRSYHPSLSQFDAHELNQLRQTLLAAEPEIYHDVtvwrhralelgmrnaglsaeAAKAGADAAMEHFAHwrSRVD 113
                 *********************988866688888888888788888887777766655578888899********99986666666666666667788** PP

       HAD_2  80 pydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsp.tDieaakkagikvia 177
                 + ++ +++L +L +++  l  +T+++++      e +g+ +yF +++ +   +++KP +++++ a e+l++   +++ vGD   tD+ +a + g+++++
  CTQ29858.1 114 VPQETHDTLAKL-AKKWPLVAITNGNAR-----PELFGLSDYFRFVLRAGPDGRSKPFADMYHLAAERLNVPLGQILHVGDDLtTDVAGAIRCGMQACW 206
                 ************.999********9875.....589**********************************************99*************99 PP

       HAD_2 178 v 178
                 +
  CTQ29858.1 207 I 207
                 6 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   9.8e-15   4.4e-11       1     209 [.      10     200 ..      10     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 9.8e-15
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHH.HHCHHHHHH.HHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletg.sehpigkal.vaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqg 97 
                 i ++ fD+d TL++ +p++ +++ +        l+++ s hp   ++ +++ ++++  l   +      ++      w ++     +lg+++  + +++
  CTQ29858.1  10 ISALTFDLDDTLYDNRPVIDRTMHES-------LAFVrSYHPSLSQFdAHELNQLRQTLLAAEP-----EIYHDVTVWRHRA---LELGMRNAGLSAEA 93 
                 6799**********************.......8888899999999989999999888877777.....8888888888888...55555555555555 PP

                 HHHHHHTTHHHHHHHHH.HTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEE CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  98 rtvallqaralavftia.dplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeeva 194
                   +  +   a + f+       v +e+ +++a+L  +++++v +t++n ++       +G  dyf +v+ +  ++ +kp  ++++ a+++L+++  +++
  CTQ29858.1  94 AKAGAD--AAMEHFAHWrSRVDVPQETHDTLAKLA-KKWPLVAITNGNARPEL-----FGlSDYFRFVLRAGPDGRSKPFADMYHLAAERLNVPLGQIL 184
                 555555..44444444336667899999*****99.5699********87655.....7888899********************************** PP

                 EEESSHH.HHHHHHHT CS
                 xxxxxxx.xxxxxxxx RF
   Hydrolase 195 mVGDgvn.DaaalaaA 209
                 +VGD ++ D+a++ + 
  CTQ29858.1 185 HVGDDLTtDVAGAIRC 200
                 **********998765 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.6e-13     7e-10       3      49 ..     162     208 ..     160     225 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.6e-13
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEES CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVl 49 
                     +KP + my  a+e+l+++ +++l +GD+l tD+agA + G++ + ++
      CTQ29858.1 162 SKPFADMYHLAAERLNVPLGQILHVGDDLTTDVAGAIRCGMQACWIK 208
                     7*****************************************99876 PP

>> PGP_phosphatase  Mitochondrial PGP phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.05   2.2e+02      40      77 ..       9      45 ..       6     118 .. 0.82
   2 ?    6.6   0.0    0.0012       5.4     138     164 ..     182     208 ..     165     211 .. 0.89
   3 ?   -0.8   0.0      0.22   9.8e+02      14      29 ..     219     234 ..     213     238 .] 0.81

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.05
  PGP_phosphatase 40 tikavvlDKDnclaapkedkvaeeikekleelrevype 77
                     +i a+ +D D++l ++++  +  +++e+l  +r+ +p+
       CTQ29858.1  9 QISALTFDLDDTL-YDNRPVIDRTMHESLAFVRSYHPS 45
                     6889999999999.566778888888888888877775 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0012
  PGP_phosphatase 138 eiavvgDRllTdvllanmmGslgvwlr 164
                      +i+ vgD l+Tdv  a + G  + w++
       CTQ29858.1 182 QILHVGDDLTTDVAGAIRCGMQACWIK 208
                      8999****************9999986 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.22
  PGP_phosphatase  14 pslvlPhltvptfrql 29 
                       s++lPh++++ + +l
       CTQ29858.1 219 DSRLLPHIEISRLASL 234
                      6899******999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1781.46
//
Query:       CTQ29859.1  [L=720]
Description: DNA-dependent ATPase I and helicase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-76  257.7   0.0    5.2e-76  256.2   0.0    1.8  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
    4.9e-76  256.4   0.0    1.7e-75  254.6   0.0    1.8  1  UvrD_C           UvrD-like helicase C-terminal domain
    1.2e-32  113.2   0.0    5.7e-32  111.1   0.0    2.1  2  AAA_19           AAA domain
    1.4e-10   41.2   0.0    5.7e-05   22.9   0.0    2.6  2  AAA_30           AAA domain
    5.4e-10   38.9   0.0    1.2e-09   37.8   0.0    1.7  1  UvrD_C_2         UvrD-like helicase C-terminal domain
     0.0024   17.7   0.0        1.1    9.0   0.0    3.2  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
  ------ inclusion threshold ------
      0.024   15.7   0.0       0.23   12.6   0.0    2.7  3  SpoIIAA-like     SpoIIAA-like
      0.031   14.0   0.1      0.063   13.0   0.1    1.5  1  DUF3553          Protein of unknown function (DUF3553)
      0.036   13.5   0.1        1.9    7.9   0.0    2.3  2  PhoH             PhoH-like protein


Domain annotation for each model (and alignments):
>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.2   0.0   2.6e-79   5.2e-76       1     314 [.      10     271 ..      10     272 .. 0.98
   2 ?   -2.5   0.1       1.4   2.8e+03     133     190 ..     459     517 ..     420     557 .. 0.53

  Alignments for each domain:
  == domain 1  score: 256.2 bits;  conditional E-value: 2.6e-79
                    SSHHHHHHHHS-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHHCTT-HHHHHHHHHCTTSEEEE CS
  UvrD-helicase   1 lnpeqreaiaslggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRieealkkaeqessdderlrlalqnlseanisT 96 
                    ln++qrea+a +++++lv+A+AGsGKT+vl++ri+ l+  e+++p +i++vTFTnkAa+E+++Ri ++++  +                  ++++T
     CTQ29859.1  10 LNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTTQ----------------GGMWVGT 89 
                    799*****************************************************************99974................89***** PP

                    HHHHHHHHHHHHHGGTTSHTTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHCHHHHHHHHHHHT CS
  UvrD-helicase  97 lHsfcqkilkkeanrigldpnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnikkeelslskskaeelrelvskakek 192
                    +H++++++l++++ +++l ++f+ild+ed     q++llk+l++      +nld+k++ ++                       +   +++  k++
     CTQ29859.1  90 FHGLAHRLLRAHHLDANLPQDFQILDSED-----QLRLLKRLIK-----AMNLDEKQWPPR-----------------------QAMWYINSQKDE 152
                    *****************************.....9********7.....69********77.......................899********* PP

                    TCCTTHHCHSSTSCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEE CS
  UvrD-helicase 193 qlspkelkkafekasdlqkkiaeflkeyqeqkkeenalDfsdllhallelleeneelaealrerykeiliDEyQDTnkiQyrilkllasgheelfm 288
                     l+p++ ++     ++ ++ ++++++ yqe +++  ++Df++ll+++ el+ +++++++++rer+  il+DE+QDTn+iQy++++lla ++ ++++
     CTQ29859.1 153 GLRPHHIQS---YGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMI 245
                    ********9...67********************************************************************************** PP

                    EE-GGG--GGGGTB-THHHHHHHHHS CS
  UvrD-helicase 289 vGDpkQsIYgFRgAdielflkkkkdf 314
                    vGD++QsIYg+RgA++e+++++ +df
     CTQ29859.1 246 VGDDDQSIYGWRGAQVENIQRFLNDF 271
                    *********************99988 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.4
                    HHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCH.HHHCCCHHHHHCHHHHHHHHHH CS
  UvrD-helicase 133 ellkelleksaddslnldkkkleklikelsksrnik.keelslskskaeelrelvskak 190
                    + + el+++ a+++++++ +    ++++ s  r++   e+ +  +  +e+l+elv+   
     CTQ29859.1 459 QRFMELIDALAQETTDMPLHVQTDRVIKDSGLRAMYeQEKGEKGQTRIENLEELVTATR 517
                    44444444444444444444333333333322222212223333333444444443333 PP

>> UvrD_C  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.6   0.0   8.4e-79   1.7e-75       1     348 [.     277     616 ..     277     617 .. 0.84

  Alignments for each domain:
  == domain 1  score: 254.6 bits;  conditional E-value: 8.4e-79
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C   1 ivLekNyRStksLlkaankflenilnrrale.kek..ktvekgekivvleaeteeeEaekiaatikallekneklediavLvRsnkdadkiskaLkkeg 96 
                 i+Le+NyRSt+++l aan+++en+ +r   + k k  ++  +ge+i ++ a ++ +Ea+++++ ik+++e+  +le++a+L+Rsn++++ +++aL +  
  CTQ29859.1 277 IRLEQNYRSTSNILSAANALIENNNGR---LgK-KlwTDGADGEPISLYCAFNDLDEARFVVNRIKTWQENGGALEQCAILYRSNAQSRVLEEALLQAS 371
                 79********************99999...322.25799************************************************************ PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxx.....xxxxxxxxxxxxxxx RF
      UvrD_C  97 ipfnvvdeekfFkreeikdilaylkllankqdkialkrilkrlvlgigkatveriseelkklglsltD....fikedtl.....eygeeFieliralee 186
                 +p++++++++fF+r+eikd+l yl+l+an++d++a++r+++++++gig++t++ + +  +++ l l +    ++ke+ l        ++F+eli al +
  CTQ29859.1 372 MPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQasreLLKEKALagraaSALQRFMELIDALAQ 470
                 *******************************************************88889999888542222566655411111456778888888888 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 187 knlelllkkiektaeerqalvskyadlfkelaeklaelkekseskr..kkeeklenlreLysllkelekkeeeeeveeklneileiatLseseleeskk 283
                 ++  +      + + + +++++               l++  e+++  k + ++enl+eL++++++++ +ee+e+ +  l+ +l++a+L+++e ++ + 
  CTQ29859.1 471 ETTDM------PLHVQTDRVIKDS------------GLRAMYEQEKgeKGQTRIENLEELVTATRQFSYNEEDEDLMP-LQAFLSHAALEAGEGQADTW 550
                 87752......2222222222211............1122222222113334*****************999999876.***************99999 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      UvrD_C 284 kekipiiTiHqAKGlEFdvVflagleegtfPsyrskk.ekrleEEkRlfYVaiTRAkkrLfisysk 348
                 ++ ++++T+H+AKGlEF+ Vf++g+eeg fPs+++ +  +rleEE+Rl YV++TRA ++L+++y++
  CTQ29859.1 551 QDAVQLMTLHSAKGLEFPQVFIVGVEEGMFPSQMALDeGGRLEEERRLAYVGVTRAMQKLTLTYAE 616
                 9**********************************996689***********************87 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.0   2.9e-35   5.7e-32       1     144 [.      14     255 ..      14     257 .. 0.93
   2 ?   -1.9   0.0         2   3.9e+03      26      68 ..     332     373 ..     330     418 .. 0.71

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 2.9e-35
      AAA_19   1 qreavealkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae......atTiHrlal................ 77 
                 qreav a++++++lv+aG+G+GKTrvl+h++a+l+++++ +p +i++v+ft++Aa e+r r+ +l +         T+H+la                 
  CTQ29859.1  14 QREAV-AASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTtqggmwVGTFHGLAHrllrahhldanlpqdf 111
                 99***.********************************************************877777899999*******99**************** PP

      AAA_19  78 ...........................................................................ldfddlltealel.leeaeeekkl 100
                                                                                            +df +ll  a el l++ +  ++ 
  CTQ29859.1 112 qildsedqlrllkrlikamnldekqwpprqamwyinsqkdeglrphhiqsygnpveqtwqkvyqayqeacdraglVDFAELLLRAHELwLNKPHILQHY 210
                 *********************************************************************999999888877766665524455566667 PP

      AAA_19 101 qeee.llivDEfqdvdelqyrLlkallgekkklllvGDpdQliyv 144
                 +e++  ++vDEfqd++  qy+ ++ l+g++ k+++vGD+dQ+iy 
  CTQ29859.1 211 RERFtNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYG 255
                 788889************************88***********96 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
      AAA_19  26 vlkhivallvelggvkpeeillvaftgrAakelrerlaalgae 68 
                  ++ +++ ++e+gg  +e+++++   +   + l+e+l ++ ++
  CTQ29859.1 332 FVVNRIKTWQENGGA-LEQCAILYRSNAQSRVLEEALLQASMP 373
                 678899999999976.799988877777777777777555544 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.9e-08   5.7e-05       2      68 ..      10      76 ..       9     132 .. 0.74
   2 !   15.5   0.0   5.6e-06     0.011      86     173 ..     210     300 ..     179     311 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.9e-08
      AAA_30  2 lnaeQaaavealltsgdrvavltGpAGtGKttalkal.reaweaag...grviglAptgkaAkvLaeelgi 68
                ln++Q++av+a  t     +++ ++AG+GKt +l +  + ++  ++   +++++++ t+kaA+++++ +g 
  CTQ29859.1 10 LNDKQREAVAASRT----NMLVLAGAGSGKTRVLVHRiAWLLSVENcspYSIMAVTFTNKAAAEMRHRIGQ 76
                899*****954433....3689999*******99776244444444788*****************98874 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 5.6e-06
      AAA_30  86 lepg.tllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVeaGgvlrdlvea....agigtaeLtevvRqkeseeraaalalregd 173
                 ++++ t ++vDE   +++ q a +   a +   kv++vGD++Q     +G++++ +++      g++t++L++++R ++ ++ +aa+al e++
  CTQ29859.1 210 YRERfTNILVDEFQDTNNIQYAWIRLLAGD-TGKVMIVGDDDQSIYGWRGAQVENIQRFlndfPGAETIRLEQNYRSTS-NILSAANALIENN 300
                 44556999******9999999988888877.99**********99999999999997547767899***********76.5555555444333 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   6.1e-13   1.2e-09       4      51 ..     556     612 ..     553     613 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 6.1e-13
    UvrD_C_2   4 altihkaQGsefpaVivfdpd.laaarmgel........rrrlLYtavTRAreklil 51 
                  +t h a+G+efp V+++ ++  + + +++l         rrl+Y++vTRA +kl+l
  CTQ29859.1 556 LMTLHSAKGLEFPQVFIVGVEeGMFPSQMALdeggrleeERRLAYVGVTRAMQKLTL 612
                 69******************987777777779***********************98 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.021        41       2      20 ..      26      44 ..      25      76 .. 0.79
   2 ?    0.5   0.0      0.21   4.1e+02      63     118 ..     214     270 ..     203     369 .. 0.63
   3 !    9.0   0.0   0.00055       1.1     174     231 ..     546     611 ..     498     613 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.021
  Viral_helicase1  2 vvhGvpGcGKStlirkllr 20
                     +v + +G+GK++++++ + 
       CTQ29859.1 26 LVLAGAGSGKTRVLVHRIA 44
                     68899********998875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.21
  Viral_helicase1  63 gkililDEylll...haGyilllaalskaklvilfGDplQipfhsrnasfllahlpssl 118
                      +  +++DE++     +++ i lla + +   v+++GD  Q+ +  r a++++ + + + 
       CTQ29859.1 214 FTNILVDEFQDTnniQYAWIRLLAGDTGK--VMIVGDDDQSIYGWRGAQVENIQRFLND 270
                      55678888876511145667777777774..99*******9998887777666655554 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00055
  Viral_helicase1 174 qalkealgvrevttvhevqGltfdkVtlvllketdlelis...........esrenllvAlTRhrkslv 231
                      qa++ +  v+  +t h++ Gl+f+ V +v  +e      s           e+r   +v+ TR+ ++l+
       CTQ29859.1 546 QADTWQDAVQ-LMTLHSAKGLEFPQVFIVGVEEGM--FPSqmaldeggrleEERRLAYVGVTRAMQKLT 611
                      4444555566.9*****************997643..22355677899999889999******999987 PP

>> SpoIIAA-like  SpoIIAA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.5   1.1e+04      35      74 ..      39      78 ..      10      87 .. 0.60
   2 ?   -2.6   0.0       6.1   1.2e+04      32      60 ..     215     249 ..     190     269 .. 0.57
   3 ?   12.6   0.0   0.00011      0.23      28      96 .]     310     396 ..     277     396 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.5
                  EEEEHHHHHHH..CCCGGECEEEEE-SSCCCCCC.CCHHCCH CS
  SpoIIAA-like 35 lvdlediklgl..ahlsrfrrvAvvtdkkwikalvallasal 74
                  lv    i + l  ++ s ++ +Av   +k ++ ++ ++++++
    CTQ29859.1 39 LVHR--IAWLLsvENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78
                  3333..333333344667777777777777777766666665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.1
                   EEEEEEE.HHHH.HHHCC......CGGECEEEEE-SS CS
  SpoIIAA-like  32 irllvdl.edik.lglah......lsrfrrvAvvtdk 60 
                   +++lvd  +d + +   +      +++  +v +v+d+
    CTQ29859.1 215 TNILVDEfQDTNnIQ--YawirllAGDTGKVMIVGDD 249
                   444444421111122..12233345666777777777 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 0.00011
                   C....SSSEEEEEEE...HHH.....HHHH..CCCGGECEEEEE-SSCC.CCCC.CCHHCCH.-CC....EEEEE..SSHHHHHHHHH CS
  SpoIIAA-like  28 a....hgkirllvdl...edi.....klgl..ahlsrfrrvAvvtdkkw.ikalvallasalflsl....evkvFkleeeeeAlaWLr 96 
                   +    +++i+l++ +   +++     ++++  ++ + ++++A++  +    ++l + l +a ++ +     +++F+  e ++Al++Lr
    CTQ29859.1 310 TdgadGEPISLYCAFndlDEArfvvnRIKTwqENGGALEQCAILYRSNAqSRVLEEALLQASMP-YriygGMRFFERQEIKDALSYLR 396
                   2344578899999995552223334334445355999**********66566665555555444.23577**************9996 PP

>> DUF3553  Protein of unknown function (DUF3553)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   3.2e-05     0.063       4      50 .]     673     720 .]     671     720 .] 0.93

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-05
     DUF3553   4 GdlVrhPkqpdWGlGqV....qSaiagrvtvnFenaGkkvidaaviaLekv 50 
                 G++VrhPk    G G++     S   +r+ v F+ +G k + aa+++Le+v
  CTQ29859.1 673 GQRVRHPK---FGEGTIvnleGSGEHSRLQVAFQGQGIKWLVAAYARLEAV 720
                 99****98...699**9999999999**********************986 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.03        59       5      38 ..      10      41 ..       7      97 .. 0.66
   2 ?    7.9   0.0   0.00095       1.9     123     188 ..     217     281 ..     212     297 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.03
                -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHH CS
        PhoH  5 ktkeQkeylealkkndivfaiGpaGtGKtylava 38
                 + +Q+e++ a ++n +v   + aG+GKt + v 
  CTQ29859.1 10 LNDKQREAVAASRTNMLVL--AGAGSGKTRVLVH 41
                5778999888877776664..569*****75444 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00095
                 EEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------.------THHHHHHTTT-TTEEEEE--G CS
        PhoH 123 vilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlp.kgkksGlaealevlknvegieivelkk 188
                 +++DE Q+t++ q   +    G   kv+++Gd  q     +     ++++++ l++  g+e+++l++
  CTQ29859.1 217 ILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGwR--GAQVENIQRFLNDFPGAETIRLEQ 281
                 89*************999999***********999766533..466777778888888888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 4724.55
//
Query:       CTQ29860.1  [L=316]
Description: magnesium/nickel/cobalt transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-57  193.6   0.5    5.1e-57  193.4   0.5    1.0  1  CorA      CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
       0.12   13.2   0.3        2.5    9.2   0.1    3.0  2  TPR_14    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.4   0.5   5.7e-61   5.1e-57       3     292 .]      25     312 ..      23     312 .. 0.96

  Alignments for each domain:
  == domain 1  score: 193.4 bits;  conditional E-value: 5.7e-61
        CorA   3 gfvWldlsspteeeleeLaeelgldelaledlldseerprvedyddylllvlpsveldkseeeeeevplsillgdnflitvrreplealdevikrlkde 101
                 + vW+dl  p+++e+++++ elg +  +  +l+d e ++r+ +++d+l ++  +++ d +++++  + +++ +++ +l+t+r+++l+a++  + r++++
  CTQ29860.1  25 SSVWVDLVEPDDDERSRVQTELGQNLATRPELEDIEASARFFEDEDGLHIHSFFFFEDADDHAGNST-VAFTIREGRLFTLRERELPAFRLYRMRVRNQ 122
                 679**********************999888******************************997666.*****************************99 PP

        CorA 102 ggkpkspgellyrlldeivdrlfellekleeeldeledel....edstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkeylrd 196
                    + +++ell+ l+++ +++l++++e++ ++l++l++ +    + ++ +e l++la+l+    k+r +l +++++l+ l++   + +l++ + e+ r+
  CTQ29860.1 123 TLVDGNAYELLLDLFETKIEQLADEIENIYSDLEKLSRVImeghQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVR---KARLPAGQLEQARE 218
                 9****************************************999999999***************************66666...77777777777*** PP

        CorA 197 lldelerllemlealrerleslqdtyssllserlNrvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallailllfwfkr 292
                 +l ++e+ll + e+l ++++ l+++ +  ++ ++Nr++k+++v++++flP+Tl+++ yGmNf+++Pel+ws+gyp +  +++m+l+ ++++++fkr
  CTQ29860.1 219 ILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEFMPELHWSFGYPGA--IVFMMLAGLAPYLYFKR 312
                 *****************************************************************************..****************8 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.19   1.7e+03      15      33 ..     169     187 ..     161     204 .. 0.81
   2 ?    9.2   0.1   0.00028       2.5      14      36 ..     210     232 ..     193     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.19
      TPR_14  15 GdpdeAiallrralalaPd 33 
                 +++deA+  l ++ + +++
  CTQ29860.1 169 DEYDEALSTLAELEDIGWK 187
                 5799999999998887776 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00028
      TPR_14  14 lGdpdeAiallrralalaPddae 36 
                 +G++++A+++lr++ +l P ++ 
  CTQ29860.1 210 AGQLEQAREILRDIESLLPHNES 232
                 7******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      729  (0.0406604); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2280.33
//
Query:       CTQ29861.1  [L=297]
Description: putative chloramphenicol resistance permease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-20   73.9  35.6    6.1e-16   58.8  14.5    2.1  2  EamA            EamA-like transporter family
     0.0029   16.5   0.2     0.0045   15.9   0.2    1.2  1  ALMT            Aluminium activated malate transporter
  ------ inclusion threshold ------
      0.014   15.1   1.4      0.014   15.1   1.4    5.1  7  FixS            Cytochrome oxidase maturation protein cbb3-ty
      0.079   12.1   3.4      0.076   12.2   1.8    1.8  2  Nuc_sug_transp  Nucleotide-sugar transporter
          1    7.5  20.3       0.81    7.9  10.7    2.1  2  DUF2070         Predicted membrane protein (DUF2070)
        5.2    7.0  12.5        1.4    8.8   1.3    3.5  3  RseC_MucC       Positive regulator of sigma(E), RseC/MucC


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8  14.5     2e-19   6.1e-16       2     134 ..       8     142 ..       7     145 .. 0.92
   2 !   21.3  13.2   8.2e-08   0.00024       5     136 ..     152     284 ..     149     285 .. 0.82

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 2e-19
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegkl...aklslkdwllllllgllgtvlafllffyalkktsasnasli 97 
                 lgi+lal+a ++w+i++ + k  + +v+  +++++r + +++++++++ ++++++   + l+    ++ll l+++ +   +llf++a+++    +asl 
  CTQ29861.1   8 LGIILALAAYFIWGIAPAYFKL-IYYVPADEILTHRVIWSFFFMVALISVSRQWPqvkKLLKTPRKIFLLALSAVLVGGNWLLFIWAVNNHHMLEASLG 105
                 79******************88.5999*****************99988888888896556666677789999999*********************** PP

        EamA  98 tslePvftlilsvlllgekltlkqllgivlillGvll 134
                  ++ P++ ++l++++lge++  +q+l+++l+++Gvl+
  CTQ29861.1 106 YFINPLVNILLGMIFLGERFRRLQWLAVILAFCGVLV 142
                 ***********************************97 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 8.2e-08
        EamA   5 llallaalfwaiyfvlskillrkvspltl..tfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsle 101
                 ++ l  a+++a+y+++ k++  +  + +l  t + + +a+i l+ i+    + +   ++ ++ lll  + + t++  l+f+ a +++  s+ ++++++ 
  CTQ29861.1 152 IIGLGLAFSFAFYGLVRKKIAVDAQTGMLveTLWLLPVAAIWLFGITDSPTSHM-GENPWSLNLLLMAAGVVTTIPLLCFTGAATRLRLSTLGFFQYIG 249
                 567899***********8886555554441144666688888888877766666.5555666677778889**************************** PP

        EamA 102 PvftlilsvlllgekltlkqllgivlillGvllil 136
                 P ++ +l+v ++ge +++ +++ +++i +++++ +
  CTQ29861.1 250 PTLMFLLAVTFYGEVPGKDKMVTFGFIWVALAVFI 284
                 ***************************99998865 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   1.5e-06    0.0045      97     180 ..      44     127 ..      34     132 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-06
        ALMT  97 gvsvFiiaalatflrliPaikarYdYgvlvflLTFclvvvsgyrtdevielAvkRfltiaiGaliclivsifvfPiwaGedLhk 180
                 + s F++ al++ +r++P++k+       +flL  + v+v+g+    +  +  + +l   +G +i  +v+i++  i+ Ge   +
  CTQ29861.1  44 IWSFFFMVALISVSRQWPQVKKLLKTPRKIFLLALSAVLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIFLGERFRR 127
                 5677889999***************************************************************99999997665 PP

>> FixS  Cytochrome oxidase maturation protein cbb3-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   2.3       1.5   4.6e+03      14      25 ..      11      22 ..       8      23 .. 0.64
   2 ?   15.1   1.4   4.6e-06     0.014       4      27 ..      73      96 ..      73      98 .. 0.94
   3 ?   -3.1   0.4       2.2   6.7e+03      11      18 ..     114     121 ..     112     122 .. 0.69
   4 ?   -1.3   3.2      0.62   1.8e+03       9      24 ..     131     146 ..     130     149 .. 0.88
   5 ?   -2.2   0.3       1.1   3.4e+03      12      22 ..     154     164 ..     152     169 .. 0.60
   6 ?   -3.5   0.5       3.1   9.2e+03       5      12 ..     185     192 ..     184     197 .. 0.64
   7 ?   -3.9   2.2         4   1.2e+04      13      22 ..     275     284 ..     271     285 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.5
        FixS 14 gllalaaFlWav 25
                +l+  a F+W++
  CTQ29861.1 11 ILALAAYFIWGI 22
                455566788976 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 4.6e-06
        FixS  4 ylLiplSlllgllalaaFlWavks 27
                ++L+ lS +l+++ +++F+Wav++
  CTQ29861.1 73 IFLLALSAVLVGGNWLLFIWAVNN 96
                69********************97 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.2
        FixS  11 lllgllal 18 
                 +llg+++l
  CTQ29861.1 114 ILLGMIFL 121
                 57777777 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.62
        FixS   9 lSlllgllalaaFlWa 24 
                 l+++l++ ++++ lW 
  CTQ29861.1 131 LAVILAFCGVLVQLWT 146
                 799*********9997 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 1.1
        FixS  12 llgllalaaFl 22 
                  lgl++ +aF 
  CTQ29861.1 154 GLGLAFSFAFY 164
                 46666666664 PP

  == domain 6  score: -3.5 bits;  conditional E-value: 3.1
        FixS   5 lLiplSll 12 
                 +L+p++ +
  CTQ29861.1 185 WLLPVAAI 192
                 67888765 PP

  == domain 7  score: -3.9 bits;  conditional E-value: 4
        FixS  13 lgllalaaFl 22 
                 ++ +ala+F+
  CTQ29861.1 275 FIWVALAVFI 284
                 4556667665 PP

>> Nuc_sug_transp  Nucleotide-sugar transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.36   1.1e+03     175     199 ..       6      30 ..       2      63 .. 0.80
   2 ?   12.2   1.8   2.5e-05     0.076      75     154 ..      65     143 ..      23     149 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.36
  Nuc_sug_transp 175 svlGliavlaacllsgfaGvYfeki 199
                     + lG+i  laa ++ g+a  Yf  i
      CTQ29861.1   6 TRLGIILALAAYFIWGIAPAYFKLI 30 
                     5689999999999999999999766 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.5e-05
  Nuc_sug_transp  75 eilakpkdtlklavPsliYtvqnnllyv.alsnLdaatyqvtyqlkilttalfsvllLkrklskkqWlslllLvaGvalvq 154
                     ++l++p+  + la+ s++ +  n ll++ a++n +     + y +  l   l+ +++L+ ++ + qWl+++l + Gv  vq
      CTQ29861.1  65 KLLKTPRKIFLLAL-SAVLVGGNWLLFIwAVNNHHMLEASLGYFINPLVNILLGMIFLGERFRRLQWLAVILAFCGVL-VQ 143
                     45666666665555.556677899999868888888888899999999999*************************95.45 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  10.7   0.00027      0.81      52     149 ..      29     142 ..       6     168 .. 0.63
   2 ?    3.0   8.4    0.0082        25      18     169 ..     132     285 ..     124     297 .] 0.58

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00027
     DUF2070  52 flltlpvlrilggrltykrslflalltelivviisllaillsall.qalvllalvlslalvfalrllvlvavsdesllkavlpaliqpllailllvly. 148
                 ++ + p+++il     + r ++  +++  ++++    + +   ll +   ++ l+ls +lv ++ ll ++av ++++l a+l ++i pl+ ill +++ 
  CTQ29861.1  29 LIYYVPADEIL-----THRVIWSFFFMVALISVSRQWPQVKK-LLkTPRKIFLLALSAVLVGGNWLLFIWAVNNHHMLEASLGYFINPLVNILLGMIFl 121
                 44444444443.....22233333333333333334444433.3357888999*********************************************6 PP

     DUF2070 149 ....................f 149
                                     +
  CTQ29861.1 122 gerfrrlqwlavilafcgvlV 142
                 555433222222222222220 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0082
     DUF2070  18 llliillalligllaflssklfgillfglpalvaflltlpvlrilggr..ltykrslflalltelivviisllaillsall....qalvllalvlslal 110
                  ++++++++l++l +f s       ++gl + ++f+++  ++r   ++  ++ +  +++  l +l+v++i l++i+ s         ++l+ l+++  +
  CTQ29861.1 132 AVILAFCGVLVQLWTFGSL-----PIIGLGLAFSFAFY-GLVR---KKiaVDAQTGMLVETLWLLPVAAIWLFGITDSPTShmgeNPWSLNLLLMAAGV 221
                 2333333333333333333.....34444444444444.3332...2223788888*************999999999877999999999999***9** PP

     DUF2070 111 vfalrllvlvavs.desllkavlpaliqpllailllvly....fspesfllllllslifalavy 169
                 v+ ++ll ++  + + +l++  +   i p l++ll+v +     ++++++ + ++ +++a++++
  CTQ29861.1 222 VTTIPLLCFTGAAtRLRLSTLGFFQYIGPTLMFLLAVTFygevPGKDKMVTFGFIWVALAVFIV 285
                 ****999998765134444444555555555555555555886233333333333333333333 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.3   0.00048       1.4      58     109 ..      94     145 ..      91     179 .. 0.88
   2 ?   -0.9   1.2      0.49   1.5e+03      63      88 ..     215     240 ..     210     263 .. 0.59
   3 ?    3.9   1.1     0.016        48      68     115 ..     244     291 ..     233     297 .] 0.62

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00048
   RseC_MucC  58 ieeksllkaallvYllPllllilg.allgsallgssellaalgallglvlgfl 109
                 +++ ++l+a+l  ++ Pl+ ++lg ++lg+ +    ++la+++a++g+++ ++
  CTQ29861.1  94 VNNHHMLEASLGYFINPLVNILLGmIFLGERF-RRLQWLAVILAFCGVLVQLW 145
                 56788999999*******97776615788888.7999********99999877 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.49
   RseC_MucC  63 llkaallvYllPllllilgallgsal 88 
                 ll+aa +v  +Pll++  +a    + 
  CTQ29861.1 215 LLMAAGVVTTIPLLCFTGAATRLRLS 240
                 67777777777877777666544444 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.016
   RseC_MucC  68 llvYllPllllilgallgsallgssellaalgallglvlgflivrlls 115
                 ++ Y+ P l+++l++ +   + g+++++++ +  ++l++ ++ + + +
  CTQ29861.1 244 FFQYIGPTLMFLLAVTFYGEVPGKDKMVTFGFIWVALAVFIVDALYTQ 291
                 788999988877776666666466666665555555544444333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2348.63
//
Query:       CTQ29862.1  [L=154]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-18   66.2   0.3    3.6e-18   65.7   0.3    1.2  1  4HBT      Thioesterase superfamily
    2.9e-05   24.5   0.3    4.1e-05   24.0   0.3    1.1  1  4HBT_3    Thioesterase-like superfamily
  ------ inclusion threshold ------
      0.023   14.9   0.1       0.16   12.1   0.1    2.0  1  DUF4442   Domain of unknown function (DUF4442)
       0.05   13.8   0.2       0.15   12.2   0.0    1.9  2  GP52      Phage gene product 52


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.3     8e-22   3.6e-18       2      78 ..      56     144 ..      55     145 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 8e-22
                 SSB-HHHHHHHHHHHHHHHHHHTTST.............TEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEETTSCEE CS
        4HBT   2 GvvhgGvylallDeaagaalrslggr.............gilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrdedgrlv 78 
                  ++hgGv++++lD+aag+++ +  ++              +++ +++l++d+lrp+r + ++t++ ++lr+g+++av +ve+++e ++++
  CTQ29862.1  56 SILHGGVIASALDVAAGLVCVGSTLTrhdtineeelrqrLSRMGTIDLRVDYLRPGRGE-RFTATSTLLRAGNKVAVARVELHNEAQVYI 144
                 69*********************************************************.*************************98875 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.3   9.2e-09   4.1e-05       5      84 ..      53     152 ..      47     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 9.2e-09
                 GECTTC.-HHHHHHHHHHHHHHT......................-S.SS..EEEEEEE-S---SEEEEEEEEEEE--SS-EEEEEEEEETTE.EEEEE CS
      4HBT_3   5 wtpggagyGGyvlAlalraaqrtv.....................pdprl..hslhvyFlrpgdagpviyhvervrdGrsfstrtvelsqggr.pifta 79 
                 w +    +GG++++ +  aa                             +    l v++lrpg  ++++ + + +r G ++++ +vel  + +  i++a
  CTQ29862.1  53 WAQSIL-HGGVIASALDVAAGLVCvgstltrhdtineeelrqrlsR---MgtIDLRVDYLRPGRGERFTATSTLLRAGNKVAVARVELHNEAQvYIASA 147
                 444444.***999999999995534777788888988877655431...2456***********************************99855268999 PP

                 EEEEE CS
      4HBT_3  80 tasfg 84 
                 ta+++
  CTQ29862.1 148 TATYM 152
                 99976 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.6e-05      0.16       5      77 ..      13      87 ..      10     153 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.6e-05
                HHHHHHHHSGGGGGG--EEEEEETTEEEEEE---G.GGB-TTSSB.-HHHHHHHHHHHHHHHHHHHS-TTEEEEE CS
     DUF4442  5 fsaavslkaPYfgtvgprieelepgraevrlkkrr.rvrNhigtv.HAiAicnlaElamGllaeatlpdthrwip 77
                +  ++   +P+ + +g+  e+ e+  a++++++++  v N  +++ H++ i++++++a+Gl++ +++ ++h  i 
  CTQ29862.1 13 VGEIFVYHMPFNRALGLELERYEKAFAQLSFNNQPmMVGNWAQSIlHGGVIASALDVAAGLVCVGSTLTRHDTIN 87
                566788899**********************99972689*999966*****************999988877765 PP

>> GP52  Phage gene product 52
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.4e-05      0.15       9      43 ..      23      58 ..      15      65 .. 0.82
   2 ?   -1.7   0.0      0.76   3.4e+03      52      60 ..     109     117 ..     105     118 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.4e-05
        GP52  9 fnGmPGselyrae.vfPelfPgkprmrlenwsqedl 43
                fn   G el r e  f +l  ++ +m++ nw+q  l
  CTQ29862.1 23 FNRALGLELERYEkAFAQLSFNNQPMMVGNWAQSIL 58
                888889999998757999966666*********876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.76
        GP52  52 tPGyGerka 60 
                  PG Ger +
  CTQ29862.1 109 RPGRGERFT 117
                 6999**965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1139.97
//
Query:       CTQ29863.1  [L=286]
Description: outer membrane phospholipase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-89  298.2   5.1    6.3e-89  298.0   5.1    1.0  1  PLA1      Phospholipase A1


Domain annotation for each model (and alignments):
>> PLA1  Phospholipase A1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.0   5.1   3.5e-93   6.3e-89      10     257 .]      41     282 ..      34     282 .. 0.98

  Alignments for each domain:
  == domain 1  score: 298.0 bits;  conditional E-value: 3.5e-93
                 SXXSSTT-BEESS--EEE.EEEESS--TTTTTTSCTGGG-.-SEEEEEEEEEEEEEEETTTSTTEEEEEEEEEEEEE-TT-GGGTS-EEEEEEEEEEEE CS
        PLA1  10 eskkntfsltpykpnyllpvtytsspnkkplseaeeeekeekkveakfQlSlktklaedllgeksdlwlayTqksfWqvynseeSrpfretnyePelfl 108
                 ++++n+f l+py++nyll +t+ts+ nk+++++ +++e++ +k e+kfQlSl ++l++++lg++s l ++yTqks+Wq+ ns+eS+pfretnyeP+lfl
  CTQ29863.1  41 QDHDNPFLLYPYESNYLL-YTWTSDLNKEAIRSYDWAENA-RKDEVKFQLSLAFPLWRGILGDNSLLGASYTQKSWWQLSNSKESAPFRETNYEPQLFL 137
                 7899*************9.899*************99988.9********************************************************* PP

                 EEEEEEEETTEEEEEEEEEEEEEE----TTS--EEEEEEEEEEEEETTEEEEEEEEEEES--...TTSTTHHHHH-SEEEEEEEEETTEEEEEEEEEET CS
        PLA1 109 slpldlkllglrlrllelglnHqSNGrseplSRSwNrvyleavfekgnlavslkpwyripesekeddNpdiedylGrgelklayklkkhelsltlrnnl 207
                  +++d++++g++lr +e+g+nH+SNGrs+p+SRSwNr+y+++++++gn+ v++kpwy + ++   ddNpdi++y+G+++lk+ y+l++  ls+  ++n+
  CTQ29863.1 138 GFATDYQFAGWTLRDIEMGYNHDSNGRSDPTSRSWNRLYARLMAQNGNWLVEVKPWYVVGNT---DDNPDITKYMGYYRLKVGYQLGEAILSAQGQYNW 233
                 **********************************************************9876...7********************************* PP

                 T.TTEEEEEEEEEEESSSSEEEEEEEEEEE-SSSTTTT-EEEEEEEEEES CS
        PLA1 208 rsenkgaveldysfplsknlrgyvqlfnGYGesLidYnkkqtrlgvGisL 257
                 + + +g +el+ s+p++k++r y+q+++GYGesLidYn +qtr+gvG++L
  CTQ29863.1 234 N-TGYGGAELGVSYPITKHVRAYTQIYSGYGESLIDYNFNQTRVGVGLML 282
                 *.**********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2301.42
//
Query:       CTQ29864.1  [L=608]
Description: ATP-dependent DNA helicase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-36  125.0   0.0    2.7e-36  123.8   0.0    1.6  1  RQC           RQC domain
    2.6e-25   88.9   0.0      9e-21   74.3   0.0    2.8  3  Helicase_C    Helicase conserved C-terminal domain
    3.5e-23   81.4   0.0    7.2e-23   80.4   0.0    1.6  1  HRDC          HRDC domain
    1.5e-21   76.9   0.0    5.9e-20   71.7   0.0    2.2  2  DEAD          DEAD/DEAH box helicase
    2.9e-15   56.7   0.3    8.9e-15   55.2   0.1    2.1  2  RecQ_Zn_bind  RecQ zinc-binding


Domain annotation for each model (and alignments):
>> RQC  RQC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   0.0   7.6e-40   2.7e-36       1     109 [.     406     514 ..     406     518 .. 0.98

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 7.6e-40
                 ---EEE-HHHHHHHHHHHHHTTS-SBHHHHHHHHHT---CCCCCTTGGGSTTTTTTTTS-HHHHHHHHHHHHHTTSEEEE..SSSBEEE-CCGHHHHTS CS
         RQC   1 ppetvDvteeaqkilscvyrtgqrfgaghivdvLrGsktkkirqlghdklstfGigkdlskkewrrlirqLiaegyLeedveeygvlkltekarevlkg 99 
                 pp+++D+  +a+k+ls++yr++qrfg+g++v+vLrG ++++ir+ ghdkl+++Gig++ s + w ++irqLi+ g++ +++ ++++l+lte+ar+vl+g
  CTQ29864.1 406 PPKQYDGLMDARKALSTIYRVNQRFGMGYVVEVLRGANNQRIREMGHDKLPVYGIGREQSHEHWVSVIRQLIHLGLVTQNIAQHSALQLTEAARPVLRG 504
                 689************************************************************************************************ PP

                 SS--EEESHH CS
         RQC 100 eekvklreek 109
                 e +++l++++
  CTQ29864.1 505 EVPLQLAVPR 514
                 *****99875 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   9.1e-05      0.33      14      70 ..      63     119 ..      53     123 .. 0.82
   2 !   74.3   0.0   2.5e-24     9e-21       5     110 ..     223     330 ..     219     331 .. 0.89
   3 ?   -1.9   0.0       1.2   4.3e+03      57     100 ..     369     413 ..     364     425 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.1e-05
                 TTTSEEEEEESSHHHHHH..HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEE CS
  Helicase_C  14 eeggkilifvntidrlek..vklllekkgikvavlhgelpqnereeileqfnkgesdvL 70 
                 + gg ++++++ i+ +++   +ll   +g+ +a+l+++ + ++++e+++  ++g++++L
  CTQ29864.1  63 VMGGLTVVVSPLISLMKDqvDQLL--ANGVAAACLNSTQSREQQQEVMAGCRSGQVRLL 119
                 568889999999995554534666..889*************************99977 PP

  == domain 2  score: 74.3 bits;  conditional E-value: 2.5e-24
                 HHHHHH..HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHH CS
  Helicase_C   5 allell..kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyi 101
                  l +l+   + ++g+  +i++n+++++e++   l+++gi++a++h+ l+++ r e+ e+f++++ ++++at + ++Gi+ p+v++V++fd+prn++sy 
  CTQ29864.1 223 PLDQLMryVQDQRGKSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYY 321
                 55555554477888889**********98555557889************************************************************* PP

                 HHHTTSSST CS
  Helicase_C 102 qriGRtgRa 110
                 q  GR+gR 
  CTQ29864.1 322 QETGRAGRD 330
                 ********6 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.2
                 HHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C  57 eileqfn.kgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                  ++ +f  +++++ L+  +  ++G   p+ n+ i +d+p++++ +
  CTQ29864.1 369 NAMGAFAeAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGL 413
                 566677656788899999999999999999999999999988765 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0     2e-26   7.2e-23       2      68 .]     533     599 ..     532     599 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 2e-26
                 HHHHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH---SHHHHHTSTTT-HHHHHHHHHHHHHHH CS
        HRDC   2 lallkaLrewReelAreedvppyvvfpdktLleiAeklPttleeLlqiegvgkrklekygeeileai 68 
                  +l+ +Lr++R+++A+ee++ppyvvf+d+tL+e+Ae+ P t++e+l+++gvg+rkle++g+ ++++i
  CTQ29864.1 533 RKLFAKLRKLRKAIADEENIPPYVVFNDATLIEMAEQSPLTAGEMLSVNGVGTRKLERFGKPFMALI 599
                 579*************************************************************987 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   1.7e-23   5.9e-20       2     172 ..      28     187 ..      27     191 .. 0.83
   2 ?    2.8   0.0     0.025        90      43     105 ..     232     294 ..     215     309 .. 0.77

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 1.7e-23
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH...HTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl...dng 97 
                 + Q+ +i+++l+g+d+lv ++TG GK+l++++p+l          g  +++v+P+ +L+++++++l   +      + ++ + +++++q++++   ++g
  CTQ29864.1  28 PGQETIIETALEGRDCLVVMPTGGGKSLCYQVPAL--------VMGGLTVVVSPLISLMKDQVDQLLANGVA----AACLNSTQSREQQQEVMagcRSG 114
                 67*********************************........457799***************99666663....33444556677777777444344 PP

                 .CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 .vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                  v++++  p+rl+     ++l   ++ +l +DEa++++++  +f++++ + l ql+q   + +    +++l+AT+ ++
  CTQ29864.1 115 qVRLLYIAPERLMLDNFLEHLANWNLAMLAVDEAHCISQWghDFRPEYAA-LGQLRQRMPQIP----FMALTATADDT 187
                 7**********987333467788999**************999*****99.9***99888888....*******9844 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.025
                 TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH.TTCSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
        DEAD  43 kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld.ngvdivvgtp 105
                 ++++g+  +i + +r+ +e+t+ +l++++  +   +++ ++++ + + ++k++  +++ivv+t 
  CTQ29864.1 232 QDQRGKSGIIYCNSRSKVEDTAARLQSRGISAA-AYHAGLENDVRAEVQEKFQrDDLQIVVATV 294
                 567788899999*****************9755.6666677666666666664155*****996 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         5   1.8e+04      24      37 ..     220     233 ..     209     235 .. 0.67
   2 !   55.2   0.1   2.5e-18   8.9e-15       2      66 .]     343     404 ..     342     404 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5
  RecQ_Zn_bind  24 elekleamlaycen 37 
                   +++ l+++++y+++
    CTQ29864.1 220 KFKPLDQLMRYVQD 233
                   44568888888866 PP

  == domain 2  score: 55.2 bits;  conditional E-value: 2.5e-18
  RecQ_Zn_bind   2 qDvsrlrrlieqseesekekeaelekleamlaycentteCrrkllleyFgeeaaeeeCgnCDnCl 66 
                   +D+  lrr +e++  +   ++ e++kl+am a++e++t Crr +ll+yFge  +e+ CgnCD+Cl
    CTQ29864.1 343 ADMAWLRRCLEEKP-AGPLQDIERHKLNAMGAFAEAQT-CRRLVLLNYFGEGRQEP-CGNCDICL 404
                   79999999997664.667889999**********9999.************87777.*******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 4792.73
//
Query:       CTQ29865.1  [L=206]
Description: threonine efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-54  184.1  13.4    2.2e-54  183.9  13.4    1.0  1  LysE             LysE type translocator
    3.2e-05   23.7   7.1    7.2e-05   22.5   7.1    1.8  1  TerC             Integral membrane protein TerC family
     0.0058   15.7   1.6     0.0084   15.2   0.1    1.8  2  DUF808           Protein of unknown function (DUF808)
  ------ inclusion threshold ------
        5.5    6.5  12.0       0.23   11.0   3.3    2.1  2  Nitrate_red_gam  Nitrate reductase gamma subunit


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.9  13.4   4.9e-58   2.2e-54       2     192 ..      14     205 ..      13     206 .] 0.96

  Alignments for each domain:
  == domain 1  score: 183.9 bits;  conditional E-value: 4.9e-58
        LysE   2 slllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksve...aslv 97 
                 + l+spGp++++v++++i+r+++++++ +lg+++g +v++ ++llGl+l+l ++ ++++i++++Gg+yL+w+g+++lr a++k+ +a+++++   a   
  CTQ29865.1  14 IALMSPGPDFFFVSQTAISRSRREAMMGVLGITCGVMVWAGVALLGLNLILARMAWLHNIIMVGGGLYLCWMGYQMLRGALKKETVASAEPQvelARSG 112
                 789*****************************************************************************************99*999* PP

        LysE  98 kpflkglllslsNPkailfwlsvisallaka.eqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvlriinvvvgvlligfavkllle 192
                 ++f kgll++l+NPkai++++sv+s ++++  ++  ++g+++l   ++v++l+wf+++a l+a++ +r+ +++++++i+ ++g l+ gf+++l+++
  CTQ29865.1 113 RSFVKGLLTNLANPKAIIYFGSVFSLFVGDSvGAGARWGIFML---IIVETLAWFMVVASLFALPGMRRGYQRMAKWIDGIAGTLFAGFGIHLIIS 205
                 *****************************86677777777776...***********************************************986 PP

>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   7.1   1.6e-08   7.2e-05      35     167 ..      42     198 ..       1     205 [. 0.70

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.6e-08
        TerC  35 llGilgAlvlRillillavallel...f..dlilligglfLlytavkellekrlenklvkeekkkkkktkst.........llavviqielaDlvfsl. 118
                 +lGi+  +++ + + ll+  l+ +   +  ++i++ ggl+L+++++++l+ +  ++++v +++ + + ++s           la   +i+    vfsl 
  CTQ29865.1  42 VLGITCGVMVWAGVALLGLNLILArmaWlhNIIMVGGGLYLCWMGYQMLRGAL-KKETVASAEPQVELARSGrsfvkglltNLANPKAIIYFGSVFSLf 139
                 456655555555444444444443445156899****************9876.334444444444444444556666433222234688888899988 PP

        TerC 119 ..DSvlaavait........sdlfivitavilsilvlrflakllakllerfptlkylal 167
                   DSv a +           +  + +++a +++++++r  ++ +ak+++ +  +  +++
  CTQ29865.1 140 vgDSVGAGARWGifmliiveTLAWFMVVASLFALPGMRRGYQRMAKWIDGIAGTLFAGF 198
                 88**9987654455999999999*************************98776665555 PP

>> DUF808  Protein of unknown function (DUF808)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.9e-06    0.0084      62     122 ..      42     101 ..      26     122 .. 0.73
   2 ?   -0.7   0.2      0.13   5.7e+02     223     266 ..     147     190 ..     134     197 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.9e-06
      DUF808  62 vwkiakgSllNKlvillPaalllsafapwlitplLmlGgayLcfEGaeKvlekllhkeeee 122
                 v  i+ g ++   v ll + l+l+ + +wl +++++ Gg+yLc+ G + +  +l++++ ++
  CTQ29865.1  42 VLGITCGVMVWAGVALLGLNLILARM-AWLHNIIMVGGGLYLCWMGYQMLRGALKKETVAS 101
                 67788888888888999999999876.69999999999**********9999996333332 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.13
      DUF808 223 amPkllkllsvvGtaAmllVgggilvhgleelglealaelvhhl 266
                 ++ + + +l +v t+A ++V +++++    + g++ +a++++ +
  CTQ29865.1 147 GARWGIFMLIIVETLAWFMVVASLFALPGMRRGYQRMAKWIDGI 190
                 55566678999999999999999887655557777777777655 PP

>> Nitrate_red_gam  Nitrate reductase gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.3   5.2e-05      0.23      56     109 ..       6      62 ..       3     144 .. 0.72
   2 ?    0.9   1.5     0.062   2.8e+02      53     108 ..     150     206 .]     146     206 .] 0.68

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.2e-05
  Nitrate_red_gam  56 lvvllgHlvGlliPk...svtealgvseelyqllalvaGliagvlalvGlllLllRR 109
                      l+v l H+++l+ P     +++ +++s++  +++  v+G+++gv++++G++lL l  
       CTQ29865.1   6 LTVALVHIIALMSPGpdfFFVSQTAISRSRREAMMGVLGITCGVMVWAGVALLGLNL 62 
                      789999*******9733357888999999999999***************9986554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.062
  Nitrate_red_gam  53 vGilvvllgHlvGl.liPksvtealgvseelyqllalvaGliagvlalvGlllLllR 108
                      +Gi+++++  +++  ++  s++ + g+++  +++   + G++  ++a +G+ l++ R
       CTQ29865.1 150 WGIFMLIIVETLAWfMVVASLFALPGMRRGYQRMAKWIDGIAGTLFAGFGIHLIISR 206
                      788887777766651556667777777777666666666666667788999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1670.40
//
Query:       CTQ29866.1  [L=214]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-44  151.1   0.2      4e-44  150.7   0.2    1.2  1  Transposase_31  Putative transposase, YhgA-like
  ------ inclusion threshold ------
        0.2   12.1   1.1       0.45   11.0   0.1    2.1  2  HTH_26          Cro/C1-type HTH DNA-binding domain


Domain annotation for each model (and alignments):
>> Transposase_31  Putative transposase, YhgA-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.7   0.2   4.4e-48     4e-44      85     203 ..       1     119 [.       1     120 [. 0.98

  Alignments for each domain:
  == domain 1  score: 150.7 bits;  conditional E-value: 4.4e-48
  Transposase_31  85 mafrLlrYavaimerhlkakekeklplviplvfYhGeee.wplslslldlfddpelakelykseflLvDltkvpddeilekrrlallllvqkhir 178
                     mafrL+rYa+a+m+rhl++++k+ lplvip++fY+G+++ +p+s+++ld f+dpe+a++ly+ +f+LvD+t++pdd+i+++r++a+l+lvqkhir
      CTQ29866.1   1 MAFRLMRYAIAAMQRHLESGHKT-LPLVIPILFYQGRRSpYPWSMRWLDNFADPETASQLYSGSFPLVDITVIPDDDIMQHRSMAALTLVQKHIR 94 
                     9**********************.*********************************************************************** PP

  Transposase_31 179 qrdlaellkklvelleelekteeql 203
                     qrd+a+ll+kl++ll+  + + +q+
      CTQ29866.1  95 QRDMAQLLDKLTHLLMLEQMSGQQI 119
                     ***************9998887775 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.32   2.9e+03       8      21 ..      90     103 ..      76     125 .. 0.67
   2 ?   11.0   0.1     5e-05      0.45       4      32 ..     186     214 .]     183     214 .] 0.94

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.32
      HTH_26   8 drgitkseLargtg 21 
                 +++i + ++a+ ++
  CTQ29866.1  90 QKHIRQRDMAQLLD 103
                 56666666666554 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 5e-05
      HTH_26   4 elmadrgitkseLargtgisaatlsrlvk 32 
                 e+m+ rgi  +  +++tg+s++ l+rl++
  CTQ29866.1 186 EAMRSRGIDDQAIMEMTGLSEDELQRLRH 214
                 89*************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1726.00
//
Query:       CTQ29867.1  [L=27]
Description: hypothetical protein CH1034_30055 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (27 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       104  (0.00580066); expected 358.6 (0.02)
Passed bias filter:                       86  (0.0047967); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.24s 00:00:00.53 Elapsed: 00:00:00.38
# Mc/sec: 213.23
//
Query:       CTQ29868.1  [L=206]
Description: neutral amino-acid efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-49  166.0  14.0    7.5e-49  165.8  14.0    1.0  1  LysE      LysE type translocator


Domain annotation for each model (and alignments):
>> LysE  LysE type translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.8  14.0   4.2e-53   7.5e-49       1     191 [.      14     202 ..      14     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 165.8 bits;  conditional E-value: 4.2e-53
        LysE   1 lslllspGpqnllvlkqgikrgfkggilvalgvligdavlillgllGlalLlkaapivlsilrllGgayLlwlgvlalrdakekkveaeksveaslvkp 99 
                 ++l+lspG+  + +++++i++g++g+ + ++g+++g a++i+l+ +Gl +L+++++ ++++l+++G+ayL+wlg++++r+a   +  + ++ + ++ k+
  CTQ29868.1  14 IILSLSPGSGAINTMTTSINHGYRGAAASIAGLQTGLAIHIVLVGVGLGTLFSRSVLAFEVLKWAGAAYLIWLGIQQWRAAGAIDLNTLAKAQ-TRGKL 111
                 689***************************************************************************************998.***** PP

        LysE 100 flkglllslsNPkailfwlsvisallakaeqygdagrlilaaglvvasliwfsllaflaarlsrrlsskkvlriinvvvgvlligfavklll 191
                 f+++++++l+NPk+i+f+++++++++ + +q++++++l+l ++++v+++i ++ +a+la+r+s++++ +k+++++n+v+g l++++++ l+ 
  CTQ29868.1 112 FQRAVFVNLTNPKSIVFLAALFPQFILP-HQPQVMQYLVLGVTTIVVDIIVMIGYATLAQRISAWIKGPKQMKALNKVFGSLFMLVGALLAS 202
                 ***************************7.9**********************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1568.28
//
Query:       CTQ29869.1  [L=330]
Description: lysophospholipase L(2) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-56  190.8   0.1    2.7e-56  190.5   0.1    1.1  1  Hydrolase_4    Serine aminopeptidase, S33
    3.4e-26   92.4   0.0    5.4e-26   91.8   0.0    1.3  1  Abhydrolase_1  alpha/beta hydrolase fold
      3e-11   44.4   4.3    4.3e-11   43.9   4.3    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
    0.00092   18.8   0.0     0.0014   18.3   0.0    1.2  1  LIDHydrolase   Lipid-droplet associated hydrolase
  ------ inclusion threshold ------
       0.24   10.5   0.0       0.34   10.0   0.0    1.1  1  LCAT           Lecithin:cholesterol acyltransferase
       0.25   10.3   0.1         16    4.3   0.0    2.1  2  Porin_8        Porin-like glycoporin RafY


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.5   0.1   8.9e-60   2.7e-56       2     239 .]      52     312 ..      51     312 .. 0.90

  Alignments for each domain:
  == domain 1  score: 190.5 bits;  conditional E-value: 8.9e-60
  Hydrolase_4   2 epkavvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrse.....gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyl 94 
                  +++ +v++++G++e++ +yae+a++L ++Gf+v+++DhrG+Grs+      +rghv +f+dyvdDlaa++++ + + + +++f+l+hSmGG+ia+l+l
   CTQ29869.1  52 HNDRLVLICPGRIESYVKYAEVAYDLFHCGFDVMIIDHRGQGRSGrllsdTHRGHVVNFSDYVDDLAALWQQQVVPGHWRKRFILAHSMGGAIATLFL 149
                  67889********************************************************************************************* PP

  Hydrolase_4  95 lrypdkvaglilsaPalkikaklkappllkl...llkllgkllpklqv..........snnlkadslsrdpevvaayeadplv.hgkitvrlllelld 178
                  +ry+++++++ l+aP+++i  +l + ++++    +++  +++  ++ +            n++++s +r++++++ y+++p +  g++t+++++e + 
   CTQ29869.1 150 QRYRAHCDAIALCAPMFGIIIRL-PDWMVRHildWAEGHQRIREEYAIgtgrwralpfAVNVLTHSRQRYRRNLRFYADEPRLqVGGPTWHWVREGML 246
                  *******************9775.3344444433444445555555558888888999**************************************** PP

  Hydrolase_4 179 amkrleeraakitlPllllhGeaDkvvdpeas.....relyerlgskdktlklypglyHellnEpd 239
                  a+++++++++k t+P+lll++e+++vvd+  +      ++++  + +  +  +++g+yHe+l+E+d
   CTQ29869.1 247 AGDEVLANVEKDTAPTLLLQAEEERVVDNLMHdryceLRAAAGHPCEGGKPLVIEGAYHEILFEKD 312
                  ********************************88854444445555599***************97 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0   1.8e-29   5.4e-26       2     257 .]      56     312 ..      55     312 .. 0.88

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 1.8e-29
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB...CHHSHHHHHHHHHHH....HHHCTTSSEEEEEETHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacin..ddygtasvaddldri....ldalgddkltlvGhSmGGmialaya 91 
                    +++i++G  +s  ++ae  +a++L ++gfdv ++D+rG g+S + ++  +  +  ++ ++ ddl ++    + +  ++k  +++hSmGG+ia+ ++
     CTQ29869.1  56 LVLICPGRIESYVKYAE--VAYDLFHCGFDVMIIDHRGQGRSGRLLSDTHrgHVVNFSDYVDDLAALwqqqVVPGHWRKRFILAHSMGGAIATLFL 149
                    69***************..***************************98766633333334444444453335566788999*************** PP

                    HHHGGGEEEEEEESE.....CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHH CS
  Abhydrolase_1  92 aeyperVkalvllga.....idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnassla 182
                    ++y  +++a++l+++     i  +  + +  + +a+++++  + ya+   r++a p++ + l++++qr          + + rf+ ++++ ++++ 
     CTQ29869.1 150 QRYRAHCDAIALCAPmfgiiIRLPDWMVRHILDWAEGHQRIREEYAIGTGRWRALPFAVNVLTHSRQR---------YRRNLRFYADEPRLQVGGP 236
                    *******************966666666777899**********************************.........99***************** PP

                    HHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHC.......HTSEEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 183 tgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaql.......lpkkrlvvisdagHlaflegp 257
                    t+++      + +   +   ++        ptl+++++++++v++ + +++++l       + + + +vi++a+H +++e++
     CTQ29869.1 237 TWHWVREGMLAGDEVLANVEKDTA------PTLLLQAEEERVVDNLMHDRYCELraaaghpCEGGKPLVIEGAYHEILFEKD 312
                    ***887777777777777777776......************************9999999888***************986 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   4.3   1.4e-14   4.3e-11      26     211 ..      81     310 ..      52     318 .. 0.62

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 1.4e-14
                    TCEEEEE--TTSTS-.....GGCS--HHHCHHHHHHHCCTT........TTSEEEEEETCHHHHHHHHHHCC..EE..EEES-......----TTT CS
  Abhydrolase_6  26 gvhvlapDlpGhGrs.....dpppldledladlaalldelaa......gggpvvlvGHSlGGalalaaaplalvvg..vlldppp....talpagl 104
                    g+ v ++D +G+Grs     d++  ++ +  d+++ l++l +        ++ ++++HS+GGa+a++++   + ++  ++l++p       lp+ +
     CTQ29869.1  81 GFDVMIIDHRGQGRSgrllsDTHRGHVVNFSDYVDDLAALWQqqvvpgHWRKRFILAHSMGGAIATLFLQRYRAHCdaIALCAPMfgiiIRLPDWM 176
                    3566888999999664444333333333335555555555557777999999***************44444445556666662235554555555 PP

                    S----TTHH...HHHH..TT-CCCCHCCH...........S-HS..CCCCHHH....CCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEE.C CS
  Abhydrolase_6 105 laaalelll...alla..llrllawlsre...........plpr..lfladed....adaawrarlarlaallaglgllpaaawadlpvpllvl.g 177
                    ++ +l +++   + +   +  + +w+++             ++r  +f+ade+      ++w +   +++a +  l      +++  ++p+l+l +
     CTQ29869.1 177 VRHILDWAEghqRIREeyAIGTGRWRALPfavnvlthsrqRYRRnlRFYADEPrlqvGGPTWHWVREGMLAGDEVLA-----NVEKDTAPTLLLqA 267
                    44444444422122224433336666444445555565563344579999999665449999999999999999888.....*********99988 PP

                    TT-CHHHHCHHCCCH..STTEEET......CE...SSS.-HHH CS
  Abhydrolase_6 178 geDplvprllerlla..qagarlp......vvlpgaGH.lphl 211
                    +e+++v  l+ ++ +  +a a+ p       v++ga H  +++
     CTQ29869.1 268 EEERVVDNLMHDRYCelRAAAGHPceggkpLVIEGAYHeILFE 310
                    9988666555544443434444445566779999**9955554 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   4.5e-07    0.0014      12     123 ..      61     171 ..      55     189 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4.5e-07
  LIDHydrolase  12 PGlveFYetFlsllseklnpelevlgishaGfeleeeekeakenekvfsLedQiehkedflkellekaksekdvklilvGHSvGaYialevlkrlse 108
                   PG +e Y +++++ ++ +++ ++v++i h+G   + +  +++++++v +++d ++   ++ ++ + +    + +k  +++HS G  ia   l+r++ 
    CTQ29869.1  61 PGRIESYVKYAEVAYDLFHCGFDVMIIDHRGQGRSGRLLSDTHRGHVVNFSDYVDDLAALWQQQVVP---GHWRKRFILAHSMGGAIATLFLQRYRA 154
                   9999**********************************99****************99999998864...356677889**************8888 PP

  LIDHydrolase 109 rs..ikkvvlLfPtied 123
                   +   i  +  +f++i++
    CTQ29869.1 155 HCdaIALCAPMFGIIIR 171
                   65669999999999887 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00011      0.34     119     147 ..     129     167 ..     109     184 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
        LCAT 119 sgkkvvliaHSmGnllvlyflkwveaea..........W 147
                 + +k +++aHSmG+ +   fl++++a+            
  CTQ29869.1 129 HWRKRFILAHSMGGAIATLFLQRYRAHCdaialcapmfG 167
                 5678899****************9987644444444440 PP

>> Porin_8  Porin-like glycoporin RafY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1    0.0071        21      81     104 ..       1      24 [.       1      30 [. 0.93
   2 ?    4.3   0.0    0.0054        16     104     169 ..      63     123 ..      45     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0071
     Porin_8  81 yfGkkedwkikvGrfeaydlfPln 104
                 +fG+k+dw+ +   f a+ + Pl 
  CTQ29869.1   1 MFGQKKDWETRENAFAAFSMGPLT 24 
                 59********************96 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0054
     Porin_8 104 nqdtfveysGntandlysdGyGyiymmkegrGrsdsggqvllskelgnwyfevntlledgtslfad 169
                   + +v+y  + a dl+  G+  +     g+Grs      lls++   + ++ +  ++d   l+++
  CTQ29869.1  63 RIESYVKY-AEVAYDLFHCGFDVMIIDHRGQGRSGR----LLSDTHRGHVVNFSDYVDDLAALWQQ 123
                 56789999.89***********98888888888753....66777777777777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2457.48
//
Query:       CTQ29870.1  [L=266]
Description: putative hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-65  220.1   0.0    4.5e-65  219.9   0.0    1.0  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
    1.6e-16   60.6   0.0    3.9e-08   33.1   0.0    2.1  2  S6PP             Sucrose-6F-phosphate phosphohydrolase
    4.8e-10   40.1   0.1    3.3e-05   24.3   0.0    3.0  3  Hydrolase        haloacid dehalogenase-like hydrolase
    0.00014   22.0   0.0    0.00093   19.3   0.0    2.2  1  Hydrolase_6      Haloacid dehalogenase-like hydrolase
    0.00036   21.0   1.9       0.03   14.7   0.0    3.2  4  HAD              haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.018   14.2   0.0        3.1    6.9   0.0    2.1  2  Trehalose_PPase  Trehalose-phosphatase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.9   0.0   1.5e-68   4.5e-65       1     255 []       5     260 ..       5     260 .. 0.97

  Alignments for each domain:
  == domain 1  score: 219.9 bits;  conditional E-value: 1.5e-68
                  EEEEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEEECTTTEEEEE--B-HHHHHHHHHHHHHTT.CE CS
  Hydrolase_3   1 ialDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGaliddekgkilykstiskedvkeiikllkenn.ve 97 
                  +a+DlDGTLl+ d+ +++++ke++k l ++gi++v+ATGR++ +v ++ ++lg+ +++i++NGa ++d++g+ +++++++++ + ++++++++   + 
   CTQ29870.1   5 VASDLDGTLLSPDHFLTPYAKETLKLLTARGINFVFATGRHYIDVGQIRDNLGIRSYMITSNGARVHDSDGQQIFAHNLDRDIAADLFEIVRNDPkIV 102
                  79*******************************************************************************************999** PP

                  EEEEESSEEEESTT.THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEE.EES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHHHHHH CS
  Hydrolase_3  98 illytedkvyvlnkeksekkkkeeektkkkkeeidseeeledeeiakil.ilkdkekldelekelksklnklltitssskgyleimpkgvsKgtalkk 194
                   ++y+ed++y++++    +++   +k++ ++++  +  el+ + i k++ +++d+e+l  le+++++++++ ++++ s+ ++le+m+ gvsKg+al++
   CTQ29870.1 103 TNVYREDEWYMNRH---RPEEMRFFKEAVFNYKLYEPGELDPQGISKVFfTCEDHEHLLPLEQAMNARWGDRVNVSFSTLTCLEVMAGGVSKGHALEA 197
                  **************...888888888888888888889999999*****9************************************************ PP

                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSE..EE--GGGTHHHHHH CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdy..vtksnnedGVakal 255
                  +ak+l+++l+++iafGDg+ND eML++ag g+ m+na++++k       v++sn++d+V ++l
   CTQ29870.1 198 VAKMLGYTLSDCIAFGDGMNDAEMLSMAGKGCIMANAHQRLKDLHPEleVIGSNADDAVPHYL 260
                  ********************************************99888**********9986 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.2e-09   9.5e-06       3      77 ..       3      75 ..       1      98 [. 0.88
   2 !   33.1   0.0   1.3e-11   3.9e-08     134     218 ..     158     242 ..     135     253 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 3.2e-09
                EEEEE-TBTTTB.S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHHHHHHHHT----SEEEETTTTEEEE..T CS
        S6PP  3 lllvsdLDntlvdgdnealarlnelleaeerkdvllvfaTGRsldsakellkeknllkPdvlitsvGteiyygee 77
                ++++sdLD+tl+ +d+  +   +e l+   ++ + +vfaTGR++ ++ +++ +  +    ++its G+ ++++ +
  CTQ29870.1  3 QVVASDLDGTLLSPDHFLTPYAKETLKLLTARGINFVFATGRHYIDVGQIRDNLGIR--SYMITSNGARVHDSDG 75
                5789***********************************************988887..59*********99663 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 1.3e-11
                 HHHHHHHHTT.TS-EEEEEETTTEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE-TT--HHHHHHHH CS
        S6PP 134 keleqlLekr.eldvkviyssgkdlDvlPkraskgeAlryLakkleleleqilvcGdsgnDeellignvlgVvVgnaqeellqwll 218
                   leq++++r + +v+v +s    l v++ + skg+Al+  ak l++ l+  +  Gd  nD+e+l    +g +++na++  l++l+
  CTQ29870.1 158 LPLEQAMNARwGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKMLGYTLSDCIAFGDGMNDAEMLSMAGKGCIMANAHQR-LKDLH 242
                 356666666536789***************************************************************99.66655 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.079   2.4e+02       2      14 ..       3      15 ..       2      21 .. 0.81
   2 !   11.0   0.0   0.00013      0.39     118     159 ..      19      61 ..      14      80 .. 0.83
   3 !   24.3   0.0   1.1e-08   3.3e-05     164     210 .]     178     226 ..     138     226 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.079
                SEEEEESBTTTBC CS
                xxxxxxxxxxxxx RF
   Hydrolase  2 ktvvfDkdGTLtt 14
                 +v+ D+dGTL+ 
  CTQ29870.1  3 QVVASDLDGTLLS 15
                6899*******95 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00013
                 HBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
   Hydrolase 118 kvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddy 159
                 ++ p a+e+++ L a+gi+ v +tg +   +  + ++lG + y
  CTQ29870.1  19 FLTPYAKETLKLLTARGINFVFATGRHYIDVGQIRDNLGiRSY 61 
                 5899***********************9999999999994333 PP

  == domain 3  score: 24.3 bits;  conditional E-value: 1.1e-08
                 EEHHCES.STTT.SHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 164 iasdiet.vakp.spegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                   ++ e+  +++ +  +++a+++ L+   ++++++GDg+nDa++l +Ag
  CTQ29870.1 178 TLTCLEVmAGGVsKGHALEAVAKMLGYTLSDCIAFGDGMNDAEMLSMAG 226
                 3334444434443888999999999999******************998 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.1e-07   0.00093       2      39 ..       6      44 ..       5      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.1e-07
                 EEESTTTSEETTE.E-TTHHHHHHHHHHTT-EEEEEE-- CS
  Hydrolase_6  2 lfDidGvLwrgdk.aipgaaealnalraagkpvvllTNn 39
                 ++D+dG+L+  d+ + p a+e+l+ l+a+g+++v+ T +
   CTQ29870.1  6 ASDLDGTLLSPDHfLTPYAKETLKLLTARGINFVFATGR 44
                 79*******9777368**************999988855 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2     0.077   2.3e+02       2      13 ..       6      17 ..       5      21 .. 0.81
   2 ?    1.8   0.0     0.091   2.7e+02      86     130 ..      20      60 ..      15      93 .. 0.75
   3 ?   -2.5   0.0       1.9   5.7e+03      24      57 ..     114     147 ..     105     150 .. 0.69
   4 !   14.7   0.0     1e-05      0.03     144     187 ..     185     222 ..     169     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.077
         HAD  2 lfDfDgTLldgd 13
                 +D+DgTLl  d
  CTQ29870.1  6 ASDLDGTLLSPD 17
                68******9765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.091
         HAD  86 ldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlat 130
                 l+p a+e l+   a+G+ +v  +g + + v  + ++lg    + +
  CTQ29870.1  20 LTPYAKETLKLLTARGINFVFATGRHYIDVGQIRDNLG----IRS 60 
                 6789999999999***********99999999999999....333 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.9
         HAD  24 rrgaprlwralreklllalfrellrldraglael 57 
                  r++p++ r  +e+ +++ ++e ++ld  g+ ++
  CTQ29870.1 114 NRHRPEEMRFFKEAVFNYKLYEPGELDPQGISKV 147
                 4566666777777777777788777777776665 PP

  == domain 4  score: 14.7 bits;  conditional E-value: 1e-05
         HAD 144 legkpvrgegkvaalrewlaaegegidleevvayGDspsDlpll 187
                 + g++++g    +al++   a+  g +l++++a+GD+++D ++l
  CTQ29870.1 185 MAGGVSKG----HALEA--VAKMLGYTLSDCIAFGDGMNDAEML 222
                 67888899....99***..77777778888************98 PP

>> Trehalose_PPase  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0031       9.4       3     108 ..       8     107 ..       6     113 .. 0.77
   2 ?    6.9   0.0     0.001       3.1     154     200 ..     181     224 ..     172     242 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0031
                      ETBTTTB---SSGGG--B-TTHHHHHHHHHTTS-..EEEE-SS-HHHHHHHH---SS..EEEEGGGTEEE-TT--EEE-HHHHTTHHHHHHHHH CS
  Trehalose_PPase   3 DydGTlspivedpdaavpssellslLkkLasdpknvvaivSGrslkeeellvkvpel..glaaeHGaeirspsgedwenqaevedlewlkevke 94 
                      D dGTl          ++++ + ++Lk L+++     ++ +Gr   ++ +  +  ++  +++ ++Ga + + +g++      ++d ++  ++ e
       CTQ29870.1   8 DLDGTLLSPDH-----FLTPYAKETLKLLTARGI-NFVFATGRHYIDVGQIRDNLGIrsYMITSNGARVHDSDGQQIFA--HNLDRDIAADLFE 93 
                      78888877666.....999999**********55.67889****999777766666555899************99887..6666666666666 PP

                      HHHHHHTTSTT-EE CS
  Trehalose_PPase  95 ileektertpGsyi 108
                      i +++ + ++++y 
       CTQ29870.1  94 IVRNDPKIVTNVYR 107
                      66666666666655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.001
                      EEEEE-S---HHHHHHHHHHTS--------EEEEEE-SSTTHHHHTT CS
  Trehalose_PPase 154 vvevrpqgvsKGkaverlleslgsadseddfvlciGDdrtDedmFsv 200
                       +ev + gvsKG a+e++ + lg++    d+ ++ GD   D +m s 
       CTQ29870.1 181 CLEVMAGGVSKGHALEAVAKMLGYT--LSDC-IAFGDGMNDAEMLSM 224
                      5899999****************98..5555.599**9999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2020.35
//
Query:       CTQ29871.1  [L=299]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-20   72.6  36.8    7.5e-11   42.4   9.6    2.0  2  EamA      EamA-like transporter family
  ------ inclusion threshold ------
        7.8    4.7  16.7        7.5    4.7  16.1    1.3  1  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6  19.2   4.9e-13   4.4e-09       6     136 ..       3     129 ..       1     130 [. 0.96
   2 !   42.4   9.6   8.3e-15   7.5e-11       2     135 ..     139     275 ..     138     277 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 4.9e-13
        EamA   6 lallaalfwaiyfvls.killrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePv 103
                 l+++ +++wa++f l+  +l  +v++++ + +r  +a++++l+++  +++++     + + l++l+g++   +++ll f a  ++++s+  l+t ++P+
  CTQ29871.1   3 LLIITTILWAFSFSLIgEYLAGSVDSYFSVLMRVGLAALVFLPFLRTRGQSP-----RTIVLYMLVGAMQLGIMYLLAFRAYLYLTVSEFLLFTVFTPL 96 
                 899***********99899999**********************99999888.....99**************************************** PP

        EamA 104 ftlilsvlllgekltlkqllgivlillGvllil 136
                 +++++  ll g kl +  ll+++l++lG+++i 
  CTQ29871.1  97 YITLIYDLLSGRKLRWGYLLSAALAVLGAAIIR 129
                 *****************************9985 PP

  == domain 2  score: 42.4 bits;  conditional E-value: 8.3e-15
        EamA   2 lgillallaalfwaiyfvlskillrkvspltltfvrfl.iagillliiallkegklaklslkd..wllllllgllgtvlafllffyalkktsasnasli 97 
                  g+ll+ l+ l++ai+ v  k+l++  +  + +++ ++ ++++++ + a++  g+ +kl+ +   w  l+ lg++++ l++++++y+ + ++a++ +++
  CTQ29871.1 139 TGLLLVQLSNLCFAIGMVGYKRLMEVRPMPQHNAFAWFyVGAFIVAVAAWFMLGNAQKLPTTTlqWSVLVWLGVVASGLGYFMWNYGATQVDAGTLGIM 237
                 6999******************9888877777777776366666666677777777677666655888899**************************** PP

        EamA  98 tslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 +++ +   l+   ++++e++ + ++++ +l++l+ l +
  CTQ29871.1 238 NNVHVPAGLLVNLAIWQEQPHWPSFISGALVILASLWV 275
                 ********************************998765 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  16.1   0.00083       7.5      17     177 ..       8     164 ..       1     188 [. 0.72

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.00083
     DUF2070  17 sllliillalligllaflssklfgillfglpalvaflltlpvlrilggrltykrs.lflalltelivviisllaillsallqalvllalvlslalvfal 114
                 ++l+++ ++l+ ++la     + +++ +++   +a+l++lp+lr+ g+     r  ++ +l+ ++ + i++lla  ++++    v+ +l+++ +++  +
  CTQ29871.1   8 TILWAFSFSLIGEYLAGS---VDSYFSVLMRVGLAALVFLPFLRTRGQS---PRTiVLYMLVGAMQLGIMYLLAFRAYLY--LTVSEFLLFT-VFTPLY 97 
                 455555566666666544...5579999999999*********886444...4554777777777777777777777654..4788888888.99999* PP

     DUF2070 115 rllvlvavsdesllkavlpaliqpllailllvly.....fspesfllllllslifalavylfivvvdr 177
                  +l++ ++s+++l++ +l++++  +l+++++ +      f ++  ll+ l+ l fa++++ + ++++ 
  CTQ29871.1  98 ITLIYDLLSGRKLRWGYLLSAALAVLGAAIIRYDkvsdhF-WTGLLLVQLSNLCFAIGMVGYKRLMEV 164
                 *****************99887776666666555866632.555666777778888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2268.78
//
Query:       CTQ29872.1  [L=317]
Description: DNA-binding transcriptional activator, homocysteine-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-44  150.5   3.9    5.7e-44  150.0   3.9    1.3  1  LysR_substrate  LysR substrate binding domain
    3.2e-16   59.0   1.2      7e-16   57.9   1.2    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.043   13.6   0.3        0.1   12.4   0.3    1.6  1  HTH_30          PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   3.9   9.6e-48   5.7e-44       3     207 ..      86     288 ..      84     290 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.0 bits;  conditional E-value: 9.6e-48
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGGSSSEC CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLargepvs 97 
                     +++ rLr+++  + + ++l+p+l+ frar P+ve++ ++g + +   +l++gelDl+ +++ +++sgl++ p ++ ++ lv++p+hpLa ++ v+
      CTQ29872.1  86 PQQTRLRLAIECHSCIQWLTPALENFRARWPHVEVDFHSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFDFEVRLVLAPEHPLAMKTLVT 180
                     6788******************************************************************************************* PP

                     GGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCC CS
  LysR_substrate  98 ledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgre 192
                     +edLa e+l+ ++ + g  d ++++l+ ag++p+   +v+++  l+++vaa +Gia lp+++v+ + ++g +v+  l e  l ++ly+++r g++
      CTQ29872.1 181 PEDLAAETLLIYPVQRGRLDIWRHFLQPAGISPQL-KSVDNTLLLIQMVAARMGIAALPHWVVESFERQGLVVTKTLGE-GLWSRLYAAVRDGEQ 273
                     *********************************99.9**************************9999999999999999.*************** PP

                     CHHHHHHHHHHHHHH CS
  LysR_substrate 193 lspavrafidflrea 207
                     ++p ++afi+ +r++
      CTQ29872.1 274 RQPVTEAFIRSARNH 288
                     **********99887 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   1.2   1.2e-19     7e-16       1      60 []       4      63 ..       4      63 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 1.2e-19
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                +++l++++a+  +gs+++AA +L+ +q+a+s+q ++LE++lg +Lf+R+++ lr T++Ge
  CTQ29872.1  4 IKHLKTLQALRNSGSLAGAAAALHQTQSALSHQFSDLEQRLGFRLFVRKSQPLRFTPQGE 63
                589*********************************************9999******97 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   1.7e-05       0.1       2      44 ..       7      48 ..       6      52 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.7e-05
                ..HHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHHHHHHS--T CS
      HTH_30  2 leTLraylenggnisatAkaLhvHrnTlryRLrrieellgldl 44
                l+TL+a l+n+g+++ +A+aLh     l++    +e+ lg+ l
  CTQ29872.1  7 LKTLQA-LRNSGSLAGAAAALHQTQSALSHQFSDLEQRLGFRL 48
                567776.7899***************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2531.74
//
Query:       CTQ29873.1  [L=754]
Description: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.4e-168  560.2   0.0   5.9e-161  535.1   0.0    2.7  3  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   3.9e-134  447.1   0.0   3.7e-125  417.6   0.0    2.2  2  Meth_synt_1  Cobalamin-independent synthase, N-terminal domai


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.29   2.6e+03      14      63 ..      18      67 ..      15      86 .. 0.82
   2 !   22.2   0.0   8.4e-09   7.5e-05     121     182 ..     155     217 ..     126     234 .. 0.88
   3 !  535.1   0.0  6.6e-165  5.9e-161       1     323 [.     426     748 ..     426     749 .. 1.00

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.29
                 -----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-S CS
  Meth_synt_2 14 evrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRg 63
                 e+++a++++ +g+ + ee  +  re  ++  ++q+++gvD l  g++   
   CTQ29873.1 18 ELKKAQESYWAGNATREELLAVGRELRARHWEQQKQAGVDLLPVGDFAWY 67
                 677888899999999999999999999999999*******9987776555 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 8.4e-09
                  S-BEEEEE-HHHHHHTSEE-.TTS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-TTSSTT- CS
  Meth_synt_2 121 kpvkglltGpvtilnwsfvr.ddvdraeaaaqialalrdevkdLeaaGikviQiDepalreGl 182
                  +++k +l Gpvt l  + v+ ++ dr + ++ i  + ++ +++L + Gi  +QiDepal   l
   CTQ29873.1 155 HKIKPVLLGPVTYLWLGKVKgEPFDRLTLLNAILPVYQQVLAELAKRGIDWVQIDEPALVLEL 217
                  56899***************99************************************97555 PP

  == domain 3  score: 535.1 bits;  conditional E-value: 6.6e-165
                  S-BB--SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHHTTSTTEE--SS--EEEETTEEE---EE- CS
  Meth_synt_2   1 lpTttiGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfgealdgfaftkngwvqsygsrcvrppiiv 98 
                  +pTttiGSfPqt+e+r +r ++kkg+l++ +y++ i+e+i++++ +qe+lg+Dvlvhge+eR+dmveyfge+ldgf+ft+ngwvqsygsrcv+pp+++
   CTQ29873.1 426 WPTTTIGSFPQTTEIRGLRLDFKKGNLDASHYRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFIFTQNGWVQSYGSRCVKPPVVI 523
                  79************************************************************************************************ PP

                  SS---SS-SSTHHHHHHTTS-SS-BEEEEE-HHHHHHTSEE-TTS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-TTSSTT--SSGGGHHHHHHHH CS
  Meth_synt_2  99 gdvsrpaamtvkesalaqsltdkpvkglltGpvtilnwsfvrddvdraeaaaqialalrdevkdLeaaGikviQiDepalreGlplkkadwaayldwa 196
                  gdvsrp+a+tv ++++aqsltdkpvkg+ltGpvtil+wsf+r+dv+r+++a+qialalrdev+dLeaaGi +iQiDepalreGlplk++dw+ayl+w+
   CTQ29873.1 524 GDVSRPQAITVDWAKYAQSLTDKPVKGMLTGPVTILCWSFPREDVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLKRSDWDAYLQWG 621
                  ************************************************************************************************** PP

                  HHHHHHHHTTS-TTSEEEEEES-S--CCCHHHHHTT--SEEEESBSSS-SSGGGGTTTT---SEEEEBSS-TTSSS--THHHHHHHHHCHHCTS-STS CS
  Meth_synt_2 197 veafrldtiaaaddtqvhtHlCyselndilsaiaaldvDvitieasrsdeellealeevkygrgvglGvydihsprvpsmeeiaalikkaldvapker 294
                  veafrl++++a+ddtq+htH+Cy+e+ndi+++iaald+Dvitie+srsd+elle++e+++y++++g+Gvydihsp+vps+e+i+al+kka++++p er
   CTQ29873.1 622 VEAFRLNAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEAFEYPNEIGPGVYDIHSPNVPSVEWIEALLKKAAQRIPVER 719
                  ************************************************************************************************** PP

                  B-BB-SS-STTS-HHHHHHHHHHHHHHHH CS
  Meth_synt_2 295 lwvnPdCGLktrkreearaalknmvdaAk 323
                  lwvnPdCGLktr+++e+raal nmv+aA+
   CTQ29873.1 720 LWVNPDCGLKTRGWPETRAALANMVQAAR 748
                  ****************************8 PP

>> Meth_synt_1  Cobalamin-independent synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.6   0.0  4.1e-129  3.7e-125       2     309 ..       5     312 ..       4     316 .. 0.98
   2 !   27.4   0.0   2.6e-10   2.3e-06     148     279 ..     546     684 ..     528     693 .. 0.80

  Alignments for each domain:
  == domain 1  score: 417.6 bits;  conditional E-value: 4.1e-129
                  EB-S---SSTTTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES---SS-HHHHHHHHTT---GGGTT.SSSSSHHHHHHHHHS CS
  Meth_synt_1   2 ssilGfPriGekRelkkalesywkgkiseeeLektakeLrakhwkkqkeagidlipvndfslYDhvLdtavllgaiPerfkleekkeeldtyFalaRG 99 
                  +++lGfPr+G +Relkka+esyw+g+ ++eeL+++++eLra+hw++qk+ag+dl pv+df++YDhvL+t++llg++P+r+++++++ ++dt+F+++RG
   CTQ29873.1   5 NHTLGFPRVGLRRELKKAQESYWAGNATREELLAVGRELRARHWEQQKQAGVDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSIDIDTLFRIGRG 102
                  699*********************************************************************************************** PP

                  C....TTCT--EEEESTTSS-EEEE-BE-SS.----S-THHHHHHHHHHHTTGGEEEEEE-HHHHHHT-EETTCC.-HCHHHHHHHHHHHHHHHHHHH CS
  Meth_synt_1 100 k....kdvaalemtkwFntnYHYlvPelekdtefklaseklleevkeakalgieakpvllGpltflkLskakeekveklellekLlpvYkelleeLke 193
                  +    + +aa+emtkwFntnYHY+vPe+ k ++fkl++++ll+ev+ea alg++ kpvllGp+t+l+L+k k+e +++l+ll+++lpvY+++l+eL++
   CTQ29873.1 103 RaptgEPAAAAEMTKWFNTNYHYMVPEFVKGQQFKLSWTQLLDEVDEALALGHKIKPVLLGPVTYLWLGKVKGEPFDRLTLLNAILPVYQQVLAELAK 200
                  *9999999****************************************************************************************** PP

                  TT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHTCCTTTSEEEEE--SS-.CCHHHHHTTSSTSEEEEETSSHCHHHHHHHHCTT.TTSEEEEEEE-SS CS
  Meth_synt_1 194 agvewvqidEPalvldlekeelealkeaYeelakekkelklllatyFdsvaealellaelpveglglDlvraeenlealkkaglpedkvLsaGvidGr 291
                  +g++wvqidEPalvl+l++++lea++ aY++l   + ++klll+tyF+ v+++l+++a+lpv+gl++Dlv++++++++l++ +lp+d++LsaG+i+Gr
   CTQ29873.1 201 RGIDWVQIDEPALVLELPPAWLEAFQPAYDAL---QGQVKLLLTTYFEGVSDNLATIAALPVQGLHVDLVHGKDDVAELHN-RLPADWLLSAGLINGR 294
                  ********************************...89*******************************************9.9*************** PP

                  S-B---HHHHHHHHHHHH CS
  Meth_synt_1 292 niWradlekalelleela 309
                  n+Wradl+++++++++l 
   CTQ29873.1 295 NVWRADLTEKYAQIKDLV 312
                  *************99986 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 2.6e-10
                  GGEEEEEE-HHHHHHT-EETTCC.-HCHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSG..CHHHHHHHHH.HHHHHT....CCTTTSEEEEE- CS
  Meth_synt_1 148 ieakpvllGpltflkLskakeekveklellekLlpvYkelleeLkeagvewvqidEPalvldl..ekeelealke.aYeela....kekkelklllat 238
                    +k +l Gp+t l  s  +e+  +++++ +++  + ++ +++L++ag+ ++qidEPal   l  ++++++a+ +   e+++     +k+++++  ++
   CTQ29873.1 546 KPVKGMLTGPVTILCWSFPREDV-SRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLplKRSDWDAYLQwGVEAFRlnaaVAKDDTQIHTHM 642
                  457889***********998877.9**********************************987755566666654312333322233688899999999 PP

                  -SS-.CCHHHHHTTSSTSEEEEETSS.HCHHHHHHHHCTT.T CS
  Meth_synt_1 239 yFdsvaealellaelpveglglDlvr.aeenlealkkaglpe 279
                   + ++++ ++ +a+l+ + + ++  r   e le+++++++p+
   CTQ29873.1 643 CYCEFNDIMDSIAALDADVITIETSRsDMELLESFEAFEYPN 684
                  9***********************996667778888766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5340.74
//
Query:       CTQ29874.1  [L=270]
Description: putative hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-75  252.6   0.0    3.2e-75  252.4   0.0    1.0  1  DLH            Dienelactone hydrolase family
      9e-07   28.6   0.0    0.00012   21.6   0.0    2.2  2  Peptidase_S9   Prolyl oligopeptidase family
    9.5e-05   22.2   0.1     0.0036   17.0   0.0    2.3  2  Abhydrolase_1  alpha/beta hydrolase fold
    9.9e-05   22.2   0.0    0.00016   21.6   0.0    1.2  1  Abhydrolase_2  Phospholipase/Carboxylesterase
    0.00018   20.8   0.1       0.53    9.5   0.0    2.6  3  Hydrolase_4    Serine aminopeptidase, S33
    0.00025   21.0   0.2       0.27   11.1   0.4    2.9  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
  ------ inclusion threshold ------
      0.016   14.7   0.1      0.057   12.9   0.0    1.9  2  Esterase_phd   Esterase PHB depolymerase
      0.079   12.7   0.0       0.29   10.9   0.0    1.9  1  Abhydrolase_5  Alpha/beta hydrolase family
       0.13   12.8   5.3       0.92   10.1   5.0    2.1  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.4   0.0   1.6e-78   3.2e-75       1     216 [.      42     265 ..      42     266 .. 0.99

  Alignments for each domain:
  == domain 1  score: 252.4 bits;  conditional E-value: 1.6e-78
         DLH   1 idaylatpkna..kkpvvvviqeifGvndnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevst 97 
                 ++ay+a+pkna  + p v+v+qeifGv+++i+d ++rla+eGY+a+aP+lY+rq+ dpn+++++ ++++elvskv++++vl+dl ++va ++++   + 
  CTQ29874.1  42 MPAYHARPKNAdgPLPIVIVVQEIFGVHEHIRDLCRRLAQEGYLAIAPELYFRQG-DPNEYHDIPTLFKELVSKVPDAQVLADL-DHVASWAARHGGDA 138
                 589****************************************************.****************************.99**9999999*** PP

         DLH  98 kkvgvvGfCmGGalalllaaevpevdaavafYG........lspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHa 188
                 +++ ++GfC+GG++++l+aa++p+++aava+YG        +sp+++++ a +++ap+l+l+g +D +ip+d+ve++++al+aan+++e++vYp+a+Ha
  CTQ29874.1 139 HRLLITGFCWGGRITWLYAAHNPQLKAAVAWYGklvgekslNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHA 237
                 *************************************************************************************************** PP

         DLH 189 Fandsresyneeaaedawervlelfkqv 216
                 F++d+r+sy+ee+a+d+w+r+l +f q+
  CTQ29874.1 238 FNADYRASYHEESAKDGWQRMLAWFAQY 265
                 **************************98 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.1     0.008        16      45      95 ..     121     169 ..     106     174 .. 0.75
   2 !   21.6   0.0   6.1e-08   0.00012     141     210 ..     190     267 ..     174     269 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.008
                   HHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEE CS
  Peptidase_S9  45 fdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavae 95 
                   ++D+  +a ++ +++  d+ rl itG   GG  t   ++ ++   kaava 
    CTQ29874.1 121 LADLDHVASWA-ARHGGDAHRLLITGFCWGGRITWLYAA-HNPQLKAAVAW 169
                   56666666665.6666899*************9999999.55555888775 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 6.1e-08
                   -.---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-S......STTSSHHHH.HHHHHHHHHHHHHCT CS
  Peptidase_S9 141 k.aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegH......gvgkprakv.eelarllaFlkealg 210
                      ++p+L + G +D  +p  + +++ +aL+ ++ +++++++p+++H      +++ ++ ++ +  +r+la+++++ g
    CTQ29874.1 190 VdLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHafnadyRASYHEESAkDGWQRMLAWFAQYGG 267
                   24899******************************************999998666677777799999*****99865 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.8e-06    0.0036      55      97 ..     116     163 ..      93     186 .. 0.79
   2 ?    3.0   0.0     0.033        66     210     251 ..     192     237 ..     165     242 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.8e-06
                    SHHHHHHHHH....HHHHHCTTSSEE.EEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1  55 gtasvaddld....rildalgddklt.lvGhSmGGmialayaaeyper 97 
                    ++a v +dld    ++  + gd +   + G+++GG+i + yaa +p+ 
     CTQ29874.1 116 PDAQVLADLDhvasWAARHGGDAHRLlITGFCWGGRITWLYAAHNPQL 163
                    5566666666665677788888877779*****************994 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.033
                    HHSEEEEEEETTCSSSCHHHHHHHHHCHTS....EEEEEEETCSSS CS
  Abhydrolase_1 210 vlaptlvisgtsDplvppkaledlaqllpk....krlvvisdagHl 251
                     +ap+l ++g++D  +p +  e ++q+l+     ++ vv++ a H 
     CTQ29874.1 192 LNAPVLGLYGAKDASIPQDTVETMRQALRAanatAEIVVYPEADHA 237
                    456************************7776676666666666665 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     8e-08   0.00016     101     201 ..     135     238 ..     119     244 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 8e-08
                    T--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTT..TS-GGGGG-..EEEEEEETT-SSS-HHHHHHHHHHHHTTS-GEEEE CS
  Abhydrolase_2 101 gipssriiigGFSqGaalalylaltlpkklggivafsgalplsqkles..satavtkkl..pilqiHgeeDpvvplalgkaakevlkkllkkvelk 192
                    g ++ r +i GF  G+ ++   a   + +l+ +va  g l+ +++l+s  ++  ++++l  p+l ++g +D  +p    +++ ++l++++   e +
     CTQ29874.1 135 GGDAHRLLITGFCWGGRITWLYAA-HNPQLKAAVAWYGKLVGEKSLNSpkHPVDIAVDLnaPVLGLYGAKDASIPQDTVETMRQALRAANATAEIV 229
                    5678999*********99854443.44578899********999997533777777654449********************************** PP

                    EETT--SS- CS
  Abhydrolase_2 193 syeglaHsi 201
                    +y++  H+ 
     CTQ29874.1 230 VYPEADHAF 238
                    ***999975 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.6   1.2e+03      15      36 ..      70      88 ..      58      91 .. 0.76
   2 !    8.4   0.0   0.00057       1.1      57     105 ..     119     167 ..     114     184 .. 0.83
   3 !    9.5   0.0   0.00027      0.53     186     234 ..     188     238 ..     173     242 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.6
  Hydrolase_4 15 ehsgryaelaeaLaaqGfavya 36
                 eh     +l+++La++G+  +a
   CTQ29874.1 70 EH---IRDLCRRLAQEGYLAIA 88
                 44...46899*******97765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00057
  Hydrolase_4  57 dyvdDlaafvekvkeehpel.plfllGhSmGGliallyllrypdkvagli 105
                  ++++Dl+ + + ++++ +++ +l + G  +GG i+ ly++++p+ +++++
   CTQ29874.1 119 QVLADLDHVASWAARHGGDAhRLLITGFCWGGRITWLYAAHNPQ-LKAAV 167
                  789999998766665555558999*******************9.77665 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00027
  Hydrolase_4 186 raakitlPllllhGeaDkvvdpeas...relyerlgskdktlklypglyHel 234
                   a ++++P+l l+G++D  ++++     r++++++++   ++ +yp++ H  
   CTQ29874.1 188 IAVDLNAPVLGLYGAKDASIPQDTVetmRQALRAANA-TAEIVVYPEADHAF 238
                  567889***************9988665555555554.9999******9975 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0     0.006        12      26      56 ..     143     173 ..     128     185 .. 0.85
   2 !   11.1   0.4   0.00014      0.27     114     175 ..     192     250 ..     174     268 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.006
                 EEEETHHHHHHHHHHHHSSSEEEEEEES--S CS
      BAAT_C  26 llGiSkGgelalllasflkkisavvlingsa 56 
                 + G + Gg ++ l a++ ++ +a+v+  g  
  CTQ29874.1 143 ITGFCWGGRITWLYAAHNPQLKAAVAWYGKL 173
                 88***********************988765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00014
                 --SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB-S---STT-----EEE CS
      BAAT_C 114 akgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGHliepPyfplceavl 175
                  ++p+l + g +D ++p +++  ++ + L++a+     +++ Yp+a H+++ +y   +   +
  CTQ29874.1 192 LNAPVLGLYGAKDASIPQDTVE-TMRQALRAANAT--AEIVVYPEADHAFNADYRASYHEES 250
                 489999999*******987765.889999999998..99999************87665544 PP

>> Esterase_phd  Esterase PHB depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.9e-05     0.057      79     128 ..     119     170 ..      47     182 .. 0.83
   2 ?   -0.7   0.0      0.42   8.3e+02      42      68 ..     222     248 ..     194     258 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-05
  Esterase_phd  79 avvval..vdalvdehrvdaarvyvaGlsaGaaladllalhypdvfaavalh 128
                   +v++ l  v + +  h+ da r+ ++G+  G+ ++ l a h p+  aava +
    CTQ29874.1 119 QVLADLdhVASWAARHGGDAHRLLITGFCWGGRITWLYAAHNPQLKAAVAWY 170
                   55555433678999***********************************975 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.42
  Esterase_phd  42 adklGvvvlypeqslranaqkcwnwyk 68 
                   a+    +v+ype     na+    +++
    CTQ29874.1 222 ANATAEIVVYPEADHAFNADYRASYHE 248
                   333445677777776666665555555 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014      0.29      40     131 ..     121     224 ..     107     252 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
  Abhydrolase_5  40 vlgknkaeeii.keapklekfvvgGhslGGvvasrfaaeeekiegvv.flasY........Pe..kdelselskkvlsivgteDgvlnvkslekak 123
                    +   +++++   ++  + ++++++G   GG ++  +aa++ +++++v +++          P+   d   +l+ +vl ++g +D+ ++++ +e  +
     CTQ29874.1 121 LADLDHVASWAaRHGGDAHRLLITGFCWGGRITWLYAAHNPQLKAAVaWYGKLvgekslnsPKhpVDIAVDLNAPVLGLYGAKDASIPQDTVETMR 216
                    445555555440444567889999999999999999999988887662333321111111122223555567788******************999 PP

  Abhydrolase_5 124 kflpkdtk 131
                    + l     
     CTQ29874.1 217 QALRAANA 224
                    99965333 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.0   0.00046      0.92      49     154 ..     117     239 ..      63     264 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00046
                    HCHHHHHHHCCTT.........TTSEEEEEETCHHHHHHHHHHCC...........................EEEEES-......----TTTS--- CS
  Abhydrolase_6  49 dladlaalldelaa.......gggpvvlvGHSlGGalalaaapla.........................lvvgvlldppp....talpagllaaa 108
                    d a+++a ld++a+       ++++  + G ++GG + +++a++                          ++++v l++p+    +          
     CTQ29874.1 117 D-AQVLADLDHVASwaarhggDAHRLLITGFCWGGRITWLYAAHNpqlkaavawygklvgekslnspkhpVDIAVDLNAPVlglyG---------- 201
                    1.333555555544666666678888999999999999996666688888888888533333333333322222222222232221.......... PP

                    -TTHHHHHHTT-CCCCHCCHS-HSCCCCHHHCCCCHCHCCCGHHHH CS
  Abhydrolase_6 109 lelllallallrllawlsreplprlfladedadaawrarlarlaal 154
                         a  a+ + ++  +   +++ + a +++ ++++++ a++a  
     CTQ29874.1 202 -----AKDASIPQDTVET---MRQALRAANATAEIVVYPEADHAFN 239
                    .....1111111122222...1111111111112222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1944.09
//
Query:       CTQ29875.1  [L=253]
Description: uridine phosphorylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-39  135.4   1.7      2e-39  135.2   1.7    1.0  1  PNP_UDP_1  Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   1.7   1.1e-43     2e-39       2     225 ..      21     245 ..      20     253 .] 0.85

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 1.1e-43
                 EEEEESSHHHHHHHHHHEEEEEEEEEE.TTEEEEEEEETTEEEEEEE--SSHHHHHHHHHHHHHHHC--SEEEEEEEEEESSTTT-TT-EEEEEEEEES CS
   PNP_UDP_1   2 iaiivgspgevellaespleetpfgregrgfkfvtGtlkgkpvvivstGiGkpnaavvaeirllkefgvkaiiriGtaGglnpdlkvGDvvipddainf 100
                 +ai+ g+p++ve +a+ + + ++  ++ r+f+ ++ +l gkpv+++stGiG p+++ +a+ +l + +gv++++riGt G+++p+++vGDv++++ ++++
  CTQ29875.1  21 LAIVPGDPERVEKIAALMDKPVKLASH-REFTSWRAELDGKPVIVCSTGIGGPSTS-IAVEELAQ-LGVRTFLRIGTTGAIQPHINVGDVLVTTGSVRL 116
                 89***************7777777777.****************************.99999998.55******************************* PP

                 SSCCGCCTHHCCTCCCCTTSSEE--HHHHHHHHHCHHTTTTTEEEEEEEEESESS-CH........HHHHH......HHHHTC-CEEESSHHHHHHHHH CS
   PNP_UDP_1 101 dgrsplygpkeegqyfpdsydapadpelrallkeaaealgikvhrGvvatadgfyaet........eaelr......llrrlgadaveMEtaavaqlAr 185
                 dg s         + +p++++a ad +++++l+eaa+  g+++h Gv+a++d+fy  +        +  +r       ++ +g+ + eME+a ++++++
  CTQ29875.1 117 DGASL--------HFAPMEFPAVADFACTTALVEAAKSIGATTHIGVTASSDTFYPGQerydtfsgRVVSRfkgsmeEWQAMGVMNYEMESATLLTMCA 207
                 *****........*********************************************88888888333335566669999****************** PP

                 HTT--EEEEEEE.EETTTBETTCT.CH.HCCCHHHHHHHHHH CS
   PNP_UDP_1 186 elgipfaairvv.sdlaaggadae.atheeveefaqeaakna 225
                   g++++ +++v  +    ++ +e  + e+ +++  +a+k +
  CTQ29875.1 208 SQGLRAGMVAGViVN----RTQQEiPNAETMKQTESHAVKIV 245
                 *******99999233....33332022244444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1918.25
//
Query:       CTQ29876.1  [L=482]
Description: recombination limiting protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.6e-106  355.0   1.3   2.6e-106  355.0   1.3    2.3  2  RmuC          RmuC family
     0.0014   18.7  17.1      0.063   13.3   2.3    4.0  4  DUF1043       Protein of unknown function (DUF1043)
     0.0039   17.7   1.9     0.0095   16.5   1.9    1.7  1  DUF3456       TLR4 regulator and MIR-interacting MSAP
  ------ inclusion threshold ------
      0.029   14.6   1.1       0.15   12.3   0.5    2.3  2  DUF4047       Domain of unknown function (DUF4047)
      0.097   12.6   5.1        1.3    8.9   1.4    2.5  2  LMP           LMP repeated region
      0.099   12.7   8.5       0.03   14.4   3.9    2.5  2  Prefoldin_3   Prefoldin subunit
       0.18   11.1  15.2      0.054   12.8  12.4    1.6  2  CASP_C        CASP C terminal
       0.69   11.1  14.1        4.9    8.4   0.0    4.0  5  SOGA          Protein SOGA
       0.75    9.5   3.9       0.26   11.0   0.3    2.1  3  DUF842        Eukaryotic protein of unknown function (DUF842)
       0.93    9.3   8.2       0.27   11.0   4.4    2.0  2  Mer2          Mer2
        1.7    8.7   7.0        2.3    8.3   1.4    3.2  3  DUF1664       Protein of unknown function (DUF1664)
        1.8    8.2   9.4       0.25   11.0   1.8    2.8  3  LXG           LXG domain of WXG superfamily
        3.6    7.5   7.2        1.2    9.0   3.9    1.8  2  Folliculin    Vesicle coat protein involved in Golgi to plasm
        4.2    7.4  14.0        1.4    8.9   5.2    3.2  3  Prefoldin_2   Prefoldin subunit
          6    6.9  12.9       0.98    9.5   3.8    3.2  4  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
        7.3    6.2  13.0         13    5.4   9.8    2.7  2  GrpE          GrpE


Domain annotation for each model (and alignments):
>> RmuC  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   3.3      0.21   2.3e+02      15      56 ..      78     119 ..      35     130 .. 0.46
   2 !  355.0   1.3  2.4e-109  2.6e-106       1     289 [.     137     433 ..     137     435 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.21
        RmuC  15 ekfeekveeeskeeaeeleslkeqlkelqelneqlgdeaenL 56 
                 +++e  ++e++++ ++++   + +++++++ +++l+++ enL
  CTQ29876.1  78 TSLEADLREVTTRLESTQLHAEDKIRQMMNSEQRLSEQFENL 119
                 222222222222222222222344444444444444444444 PP

  == domain 2  score: 355.0 bits;  conditional E-value: 2.4e-109
        RmuC   1 eqleellkplkeklekfeekveeeskeeaeeleslkeqlkelqelneqlgdeaenLtkaLk.nsktrGnwGEvqLerilessgleegeeyetqvslkde 98 
                 ++l+ ll+pl+e+l+ f+++v+e+  +ea+e+++l +++++lq+ln+q+ +ea nLtkaLk ++kt+GnwGEv+L r+le+sgl+eg ey+tqvs++++
  CTQ29876.1 137 QSLHGLLTPLREQLDGFRRQVQESFGQEARERHTLAHEIRNLQQLNAQMAQEALNLTKALKgDNKTQGNWGEVVLTRVLEASGLREGYEYQTQVSIETD 235
                 57999******************************************************************************************9888 PP

        RmuC  99 ege.lrpDvvvklpggkklviDsKvpleaYerlveaeddeereealkahaksvkkhikeLseKdYeele...sldyvlmFiPiEsayaealeadpeLle 193
                 + + ++pDv+v+lp+gk++viD+K+ l aYer+++aedd +re al++h++sv++hi+ L +KdY++l+   sldyvlmFiP+E+a+ +a++++peL++
  CTQ29876.1 236 NRSrMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYTREVALQEHLASVRNHIRLLGRKDYQQLPglrSLDYVLMFIPVEPAFLLAIDRQPELIS 334
                 6545****************************************************************7788*************************** PP

        RmuC 194 ealrkkVvlasPttLlalLrtvamlwrqeaqeknaeeiaellgelydkfekfgedleklgkklekaqksydkavkkle...gnilrkaeklkelgvkek 289
                 eal+++++l+sPttLl++Lrt+a+lwr+e+q++na++iae++g+lydk++ f++d++++g++l+kaq+sy++a+kkl+   gn+l +ae ++ lgv+ k
  CTQ29876.1 335 EALQNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQKIAERAGRLYDKMRLFVDDMSAIGQSLDKAQESYRQAMKKLAsgrGNLLAQAEAFRGLGVEVK 433
                 ***********************************************************************************************9876 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   2.3   5.6e-05     0.063       1     103 [.       9     111 ..       9     122 .. 0.84
   2 ?    3.7   2.1     0.051        57      27      79 ..      78     130 ..      71     139 .. 0.88
   3 ?    5.8   4.1     0.012        13      24      84 ..     134     197 ..     126     210 .. 0.75
   4 ?    4.7   0.1     0.025        28      25      80 ..     364     437 ..     349     482 .] 0.68

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.6e-05
     DUF1043   1 aliglvvGiiiGalilrltnsklkkqkklekelekakaeleeqkqeled..HfaqsaelLetlaedyqkLyqhlaksseeLlpeleeqelfqqkkleek 97 
                 a+i+l +G+++G l+++    ++   ++l +e  +   el+  +q+l++  H  +  elL++  ++ +++++ l+    e ++ le  +l  + k+++ 
  CTQ29876.1   9 AVIALAAGLMVGWLATKARADQI--RADLIEERRELDIELSAARQQLAQeaHWREECELLNNELRSLRDINTSLEADLREVTTRLESTQLHAEDKIRQM 105
                 689**************988885..56788889999999999999996444***********9999999999999999999889999999988888888 PP

     DUF1043  98 kaeaee 103
                  ++++ 
  CTQ29876.1 106 MNSEQR 111
                 776654 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.051
     DUF1043  27 kklekelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqhlaksseeL 79 
                  +le++l + +++le  + + ed + q ++  ++l+e++++L + + + s++ 
  CTQ29876.1  78 TSLEADLREVTTRLESTQLHAEDKIRQMMNSEQRLSEQFENLANRIFEHSNRR 130
                 6899****************************************999999875 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.012
     DUF1043  24 kkqkklekelekakaeleeqkqeledHfaqsaelLetlaedy...qkLyqhlaksseeLlpele 84 
                 ++ ++l+  l+  +++l+  ++++++ f q a    tla++    q+L+ ++a+++ +L+ +l+
  CTQ29876.1 134 QNRQSLHGLLTPLREQLDGFRRQVQESFGQEARERHTLAHEIrnlQQLNAQMAQEALNLTKALK 197
                 4667888999999****************99998888887661115566688888877755444 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.025
     DUF1043  25 kqkklekelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqhlaksseeL..................l 80 
                 +q++ ++++ +   +l +  +   d ++   + L++ +e+y++ +++la++  +L                   
  CTQ29876.1 364 HQSRNAQKIAERAGRLYDKMRLFVDDMSAIGQSLDKAQESYRQAMKKLASGRGNLlaqaeafrglgvevkrgiN 437
                 566666666666666666666667777778899********************996666666666665555553 PP

>> DUF3456  TLR4 regulator and MIR-interacting MSAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.9   8.5e-06    0.0095      22     120 ..      81     181 ..      61     203 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.5e-06
     DUF3456  22 kkevdvgsfrldskgkkkkkk.ipyakSElrltevleevCekmldYalhkekktskrvykkmsedlkelkelkdkevkvdlgipselkdep.aevkelk 118
                 + ++++   rl+s++   + k +++ +SE+rl+e +e++ +++ +++ +  ++++++  ++  + l+e      ++v+   g++ + + +   e+ +l+
  CTQ29876.1  81 EADLREVTTRLESTQLHAEDKiRQMMNSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLHGLLTPLREQLDGFRRQVQESFGQEARERHTLaHEIRNLQ 179
                 2336666778888887888888********************************9*9999999855544444455555555555555555445555555 PP

     DUF3456 119 ka 120
                 + 
  CTQ29876.1 180 QL 181
                 44 PP

>> DUF4047  Domain of unknown function (DUF4047)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   0.00013      0.15      36     117 ..      28     107 ..      12     138 .. 0.85
   2 ?   -0.7   0.0       1.3   1.5e+03      51      81 ..     382     416 ..     344     423 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
     DUF4047  36 akqhkelilheyeemksklkvdsveeieqalsvwkqgrekikaerealqkvyteieepynqvqeelkvnksesskqvlsyvn 117
                 a+q +  + +e +e++ +l +   +++ q++  w+++ e ++ e  +l+++ t++e+  + v   l  ++ +++ ++ + +n
  CTQ29876.1  28 ADQIRADLIEERRELDIELSAA-RQQLAQEA-HWREECELLNNELRSLRDINTSLEADLREVTTRLESTQLHAEDKIRQMMN 107
                 5555555566777888888765.46677765.6******************************9999999888888877766 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.3
     DUF4047  51 ksklkvdsveeieq....alsvwkqgrekikaere 81 
                 k++l vd +  i q    a + ++q + k+++ r 
  CTQ29876.1 382 KMRLFVDDMSAIGQsldkAQESYRQAMKKLASGRG 416
                 45555665555554111055667777788777765 PP

>> LMP  LMP repeated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.4    0.0012       1.3      12      76 ..      42     107 ..      27     117 .. 0.77
   2 ?    5.9   1.1      0.01        11      11      86 ..     100     177 ..      93     205 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0012
         LMP  12 nDkeiqkakkeLekeiqkanq.alnsnntasmqsakssLdakvteitkkLekFnkdkeakFkeLeq 76 
                  D e+  a+++L +e +  ++ +l +n+  s++ ++ sL+a + e+t +Le  +   e k +++ +
  CTQ29876.1  42 LDIELSAARQQLAQEAHWREEcELLNNELRSLRDINTSLEADLREVTTRLESTQLHAEDKIRQMMN 107
                 47788899999999988665526778999**********************998888888777655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.01
         LMP  11 DnDkeiqkakkeLekeiqk.anqalnsnntasmqsakssLdakvteitkkLekFnkdkeakFkeLeqtRkdieeFl.k 86 
                 D+ +++ +  + L+++ ++ an+++++ n    +  ++sL   +t ++++L+ F+++ +  F +  + R+ +   + +
  CTQ29876.1 100 DKIRQMMNSEQRLSEQFENlANRIFEHSNRRVDEQNRQSLHGLLTPLREQLDGFRRQVQESFGQEARERHTLAHEIrN 177
                 5556777888899999988799999999999999999**********************9999988888887766633 PP

>> Prefoldin_3  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   3.9   2.7e-05      0.03       2      87 ..      51     139 ..      50     151 .. 0.78
   2 ?   -1.1   0.1       1.7     2e+03      10      44 ..     164     198 ..     155     206 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.7e-05
  Prefoldin_3   2 kslyklreweaeydglkeeisalkeeddateedllriardfegslvt.ekEveeilGekqgvtrs....kqQvvdlisrRiDYVkqniktl 87 
                  ++l++  +w +e + l++e+++l++ +++ e dl++++  +e++++  e+ +++++ ++q+++ +    ++ + +  +rR+D  +qn ++l
   CTQ29876.1  51 QQLAQEAHWREECELLNNELRSLRDINTSLEADLREVTTRLESTQLHaEDKIRQMMNSEQRLSEQfenlANRIFEHSNRRVD--EQNRQSL 139
                  667778899****************99****************99973688******9886554411116667777789999..5666655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.7
  Prefoldin_3  10 weaeydglkeeisalkeeddateedllriardfeg 44 
                     e ++l +ei++l++ +    ++ l++++ ++g
   CTQ29876.1 164 EARERHTLAHEIRNLQQLNAQMAQEALNLTKALKG 198
                  55677789999999988666666667777776666 PP

>> CASP_C  CASP C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8  12.4   4.9e-05     0.054       4     131 ..      60     185 ..      57     203 .. 0.69
   2 ?   -3.6   0.0         5   5.6e+03     175     180 ..     395     400 ..     364     426 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.9e-05
      CASP_C   4 qeelseleaeleeqkeLnekLEndllkvqseasnaskasdassagsevsrka.esegrksptssiis.gaeesesaesssessiLpivtsQRDRFrkrn 100
                 +ee + l++el++++++n++LE+dl +v ++ ++++ + ++ ++ +++++++  se+ ++ ++ i + + ++ ++++++s +++L+ + +Q D Fr+++
  CTQ29876.1  60 REECELLNNELRSLRDINTSLEADLREVTTRLESTQLH-AEDKIRQMMNSEQrLSEQFENLANRIFEhSNRRVDEQNRQSLHGLLTPLREQLDGFRRQV 157
                 6788999*********************9998866533.3333333333333233322333444444034444445555699**************987 PP

      CASP_C 101 aeLEeelrkqeetvsslraeiaslqkDNlkL 131
                 +e      ++ ++ ++l +ei +lq+ N ++
  CTQ29876.1 158 QE---SFGQEARERHTLAHEIRNLQQLNAQM 185
                 76...56666667777778888888777665 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5
      CASP_C 175 aeldkY 180
                 ++ldk 
  CTQ29876.1 395 QSLDKA 400
                 222222 PP

>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       4.1   4.6e+03      61      78 ..      36      53 ..      23      57 .. 0.71
   2 ?    2.8   8.1      0.24   2.7e+02      13      74 ..      60     119 ..      46     160 .. 0.80
   3 ?   -0.9   0.4       3.4   3.8e+03      34      54 ..     147     167 ..     122     196 .. 0.54
   4 ?   -2.0   0.1       7.4   8.3e+03      19      38 ..     171     191 ..     161     208 .. 0.59
   5 ?    8.4   0.0    0.0044       4.9      57      84 ..     271     298 ..     250     301 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 4.1
        SOGA 61 sskeaelkeeLklarlqi 78
                 ++ +el+ eL +ar+q 
  CTQ29876.1 36 IEERRELDIELSAARQQL 53
                456778888888988886 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.24
        SOGA  13 eeEaeLlrrslseleeenkqlteeLnkyksklgeeessleeeeeassdsskeaelkeeLkla 74 
                  eE eLl ++l  l + n +l+ +L+   + l++++  +e+  +  + +++e+ l e+ +  
  CTQ29876.1  60 REECELLNNELRSLRDINTSLEADLREVTTRLESTQLHAED--KIRQMMNSEQRLSEQFENL 119
                 79************************999998888776666..5555556666666666544 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 3.4
        SOGA  34 teeLnkyksklgeeessleee 54 
                 +e+L  ++ + +e+ +++++e
  CTQ29876.1 147 REQLDGFRRQVQESFGQEARE 167
                 444444444444444433332 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 7.4
        SOGA  19 lrrslseleeenkqltee.Ln 38 
                 l  ++ +l++ n q+ +e Ln
  CTQ29876.1 171 LAHEIRNLQQLNAQMAQEaLN 191
                 455555666666666555233 PP

  == domain 5  score: 8.4 bits;  conditional E-value: 0.0044
        SOGA  57 assdsskeaelkeeLklarlqineLsgk 84 
                 a++d ++e +l+e+L ++r  i+ L++k
  CTQ29876.1 271 AEDDYTREVALQEHLASVRNHIRLLGRK 298
                 5678899********************9 PP

>> DUF842  Eukaryotic protein of unknown function (DUF842)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   0.00023      0.26      56     105 ..      72     122 ..      64     149 .. 0.77
   2 ?   -2.8   0.2       4.2   4.7e+03      62      80 ..     169     187 ..     154     204 .. 0.56
   3 ?   -2.8   0.0       4.1   4.6e+03      45      62 ..     392     409 ..     388     415 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
      DUF842  56 plqkaqkvvqqEleqfqerLqrcvmvCqdkakdklgpns.sekqtakaeke 105
                 +l++++  ++ +l ++  rL++ + +++dk+++ +++++  ++q +++ ++
  CTQ29876.1  72 SLRDINTSLEADLREVTTRLESTQLHAEDKIRQMMNSEQrLSEQFENLANR 122
                 57889999***************************5533344444444443 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.2
      DUF842  62 kvvqqEleqfqerLqrcvm 80 
                 +++ +E+ ++q+   + ++
  CTQ29876.1 169 HTLAHEIRNLQQLNAQMAQ 187
                 4455555555543333333 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 4.1
      DUF842  45 sveqCvekCseplqkaqk 62 
                 ++ q ++k++e++++a k
  CTQ29876.1 392 AIGQSLDKAQESYRQAMK 409
                 555555555555555544 PP

>> Mer2  Mer2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.4   0.00024      0.27      37     144 ..      91     197 ..      89     234 .. 0.85
   2 ?   -2.8   0.0       4.2   4.7e+03      92     114 ..     388     409 ..     363     423 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00024
        Mer2  37 LEsvdLrEksskLinvlkenskeLlkvisklnellidlkeeesdnskekeikdlikdLsvkienqlskvskavldklkvkkh.ksntdtksnLtellek 134
                 LEs +L   ++  i+ + ++ ++L++ +++l +++ +  +  +d+++ +++  l++ L  +++    +v++++ ++  ++++  ++  + ++L   +++
  CTQ29876.1  91 LESTQLH--AEDKIRQMMNSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLHGLLTPLREQLDGFRRQVQESFGQEARERHTlAHEIRNLQQLNAQMAQ 187
                 6777774..67889999*********************************************************9999655423445556777888888 PP

        Mer2 135 keakileeid 144
                 +  +++++++
  CTQ29876.1 188 EALNLTKALK 197
                 8888888775 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.2
        Mer2  92 kdLsvkienqlskvskavldklk 114
                  d+s+ i ++l+k +++  + +k
  CTQ29876.1 388 DDMSA-IGQSLDKAQESYRQAMK 409
                 34443.55555555555544443 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.4     0.002       2.3      37      94 ..      71     128 ..      63     156 .. 0.83
   2 ?   -0.5   0.1       1.1   1.2e+03      39      87 ..     139     187 ..     134     202 .. 0.47
   3 ?    1.6   0.0      0.23   2.6e+02      40      71 ..     387     418 ..     365     442 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.002
     DUF1664  37 rslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevre 94 
                 rsl+d  +s+  +l +v + l++t+ h +++i ++ ++ +  +e  +++++ + e ++
  CTQ29876.1  71 RSLRDINTSLEADLREVTTRLESTQLHAEDKIRQMMNSEQRLSEQFENLANRIFEHSN 128
                 89***********************************999999999999999987544 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
     DUF1664  39 lsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeike 87 
                 l+  ++ + +ql+ +  ++++   + +++ +++ +++ + +++ +++++
  CTQ29876.1 139 LHGLLTPLREQLDGFRRQVQESFGQEARERHTLAHEIRNLQQLNAQMAQ 187
                 5555555555555555555444333333333333333333333333333 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.23
     DUF1664  40 sdavesvskqleqvseslaatkrhLssridrv 71 
                  d ++ ++++l++ +es +++ ++L+s   ++
  CTQ29876.1 387 VDDMSAIGQSLDKAQESYRQAMKKLASGRGNL 418
                 45677888889999998888888887765555 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.8   0.00023      0.25     120     179 ..      64     123 ..      36     128 .. 0.87
   2 ?   -0.7   0.1      0.89   9.9e+02     156     175 ..     173     192 ..     137     201 .. 0.55
   3 ?    0.3   0.1      0.43   4.8e+02      12      48 ..     394     430 ..     384     434 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
         LXG 120 deinkilasvsdivslpelddsevkdslqkakkkvqetiekledfdqeqksalanlesdl 179
                 + +n+ l+s +di    e d++ev++ l++ + ++++ i+++++ +q +++ ++nl + +
  CTQ29876.1  64 ELLNNELRSLRDINTSLEADLREVTTRLESTQLHAEDKIRQMMNSEQRLSEQFENLANRI 123
                 5578889999999999999************************************99876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.89
         LXG 156 etiekledfdqeqksalanl 175
                 + i++l+++++++ ++  nl
  CTQ29876.1 173 HEIRNLQQLNAQMAQEALNL 192
                 23444444444444444443 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.43
         LXG  12 ieqlkseleelkeqleqlkkaiqklveledslkGkaa 48 
                  ++l ++ e++++++++l ++  +l++  ++++G ++
  CTQ29876.1 394 GQSLDKAQESYRQAMKKLASGRGNLLAQAEAFRGLGV 430
                 5677888889999999999998887666669988776 PP

>> Folliculin  Vesicle coat protein involved in Golgi to plasma membrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.9     0.001       1.2      74     164 ..      98     181 ..      89     187 .. 0.79
   2 ?   -2.0   0.1       2.6   2.9e+03      80     113 ..     378     411 ..     363     476 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.001
  Folliculin  74 stdkerlllkawsfiveafeklaaeiqalaeaelereskeeeassaassssalkadgsglsrregssfslskekylrrsksklkarsLael 164
                 ++dk r+++++ + ++e+fe+la++i + +++++++++++   s  +   + l+++ +g++r+ ++sf+   ++  +r++ + + r+L +l
  CTQ29876.1  98 AEDKIRQMMNSEQRLSEQFENLANRIFEHSNRRVDEQNRQ---S-LHGLLTPLREQLDGFRRQVQESFG---QEARERHTLAHEIRNLQQL 181
                 6788899***************************887772...2.344456688899999999888887...4555566666678888877 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.6
  Folliculin  80 lllkawsfiveafeklaaeiqalaeaelereske 113
                 +l ++++++v+ ++ + +++ +++e+  +  +k 
  CTQ29876.1 378 RLYDKMRLFVDDMSAIGQSLDKAQESYRQAMKKL 411
                 5555666666666666666655554444333332 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   5.2    0.0012       1.4      11      97 ..      36     121 ..      32     126 .. 0.89
   2 ?    2.3   0.5      0.14   1.6e+02       2      58 ..     156     213 ..     155     218 .. 0.79
   3 ?   -0.3   0.0      0.92     1e+03      61      81 ..     391     411 ..     370     426 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0012
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  11 qqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelke 97 
                   ++ ++l+ ++  +++ql       ee+ell ++ +  + +   l + d+ ev+++Le ++  +e +i+++ +++++l +++e+l +
   CTQ29876.1  36 IEERRELDIELSAARQQLAQEAHWREECELLNNELRSLRDINTSL-EADLREVTTRLESTQLHAEDKIRQMMNSEQRLSEQFENLAN 121
                  566778888888899999999999999999999999999998876.99***********************************9865 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.14
                  HHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHS-TT--EEEEETTEEEEE CS
  Prefoldin_2   2 elinkfqqlqqqlqqlaqqikqlet.qlkelelvleelelldedtkvyklvGdvlvkq 58 
                  + ++ f q   + + la++i++l++ + + ++++l+  + l+ d+k + + G+v + +
   CTQ29876.1 156 QVQESFGQEARERHTLAHEIRNLQQlNAQMAQEALNLTKALKGDNKTQGNWGEVVLTR 213
                  6678888888899999999999988346778899999999999999999999887655 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.92
                  HHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  61 eevkeeLeerketlekeiktl 81 
                    + + L++ +e++ + +k+l
   CTQ29876.1 391 SAIGQSLDKAQESYRQAMKKL 411
                  344455566666666665555 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.3   7.1e+03     110     131 ..       5      26 ..       3      38 .. 0.80
   2 ?    9.5   3.8   0.00087      0.98      16      78 ..      63     125 ..      48     151 .. 0.73
   3 ?    2.6   0.6      0.11   1.3e+02      54      75 ..     175     195 ..     129     202 .. 0.43
   4 ?   -2.1   0.0       3.2   3.6e+03      68      99 ..     389     420 ..     366     422 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.3
  Baculo_PEP_C 110 nllqalnnldlgalsqeledal 131
                    +++a+ +l+ g +  +l++++
    CTQ29876.1   5 IIISAVIALAAGLMVGWLATKA 26 
                   5889999999999999988776 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00087
  Baculo_PEP_C  16 ld.LtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalna 78 
                   ++ L+n L ++r  n+++ a+l +  + +e++  + +++++++++  ++rl+++++nL + + +
    CTQ29876.1  63 CElLNNELRSLRDINTSLEADLREVTTRLESTQLHAEDKIRQMMN-SEQRLSEQFENLANRIFE 125
                   5526999*****************999999776667999999555.677788877777776643 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.11
  Baculo_PEP_C  54 lksllaeldtrldtlltnLtda 75 
                   +++ l++l++++++ + nLt+a
    CTQ29876.1 175 IRN-LQQLNAQMAQEALNLTKA 195
                   333.222333333333333333 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 3.2
  Baculo_PEP_C  68 lltnLtdalnalqdtlrneLtnlnsiltnLls 99 
                    ++++ ++l + q++ r++++ l s   nLl+
    CTQ29876.1 389 DMSAIGQSLDKAQESYRQAMKKLASGRGNLLA 420
                   44555566666667777777777776666665 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   9.8     0.012        13       7      95 ..      81     175 ..      37     200 .. 0.72
   2 ?   -3.3   0.1       5.5   6.1e+03      74      80 ..     396     402 ..     364     423 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.012
                 CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC...HHH-HH.HHHHHH CS
        GrpE   7 eeeeedeeeeleeeleelekevkelkekllrllaefenlrkrt....ekekeeakkfaiekfakdLLpvlDnleralksak.eneeek.slleGv 95 
                 e+++++ ++ le+    +e++++++ ++ +rl ++fenl +r     +++ +e  + ++  +++ L + lD ++r+++ +  ++++e   l+  +
  CTQ29876.1  81 EADLREVTTRLESTQLHAEDKIRQMMNSEQRLSEQFENLANRIfehsNRRVDEQNRQSLHGLLTPLREQLDGFRRQVQESFgQEARERhTLAHEI 175
                 33333444444444444999*******************99986666788888888888888888889999999999976554444433444444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 5.5
                 HHHHHHH CS
        GrpE  74 nleralk 80 
                 +l++a +
  CTQ29876.1 396 SLDKAQE 402
                 2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1657  (0.0924201); expected 358.6 (0.02)
Passed bias filter:                      730  (0.0407162); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 3120.07
//
Query:       CTQ29877.1  [L=251]
Description: bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.8e-111  368.7   0.1   1.1e-110  368.5   0.1    1.0  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      1e-23   83.9   0.0      2e-23   82.9   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    2.5e-22   79.4   0.0    4.9e-22   78.4   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    6.6e-19   68.2   0.0    1.2e-18   67.4   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    7.2e-16   58.5   0.0    9.8e-16   58.0   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
    5.1e-13   49.6   0.0    9.8e-13   48.7   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    2.3e-06   27.5   0.0    3.6e-06   26.9   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
    0.00014   21.6   0.0    0.00035   20.3   0.0    1.6  1  UPF0020          Putative RNA methylase family UPF0020
     0.0006   19.4   0.0     0.0011   18.6   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0024   17.8   0.1     0.0054   16.6   0.0    1.7  2  Methyltransf_8   Hypothetical methyltransferase
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.094   12.4   0.0    1.8  2  GCD14            tRNA methyltransferase complex GCD14 subunit
      0.014   15.0   0.0      0.049   13.3   0.0    1.7  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
      0.044   13.4   0.1        0.1   12.2   0.1    1.5  1  MetW             Methionine biosynthesis protein MetW
      0.064   12.5   0.0        0.1   11.8   0.0    1.4  1  Rsm22            Mitochondrial small ribosomal subunit Rsm22
      0.072   12.3   0.0       0.41    9.8   0.0    1.9  2  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family


Domain annotation for each model (and alignments):
>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.5   0.1  9.3e-114  1.1e-110       2     233 .]      15     250 ..      14     250 .. 0.99

  Alignments for each domain:
  == domain 1  score: 368.5 bits;  conditional E-value: 9.3e-114
                      XXXXXXX...XXXXXX-HHHHHHHHHHHHHTTTHHHHHHHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHH CS
  Ubie_methyltran   2 tklkeek...vkevfesvaskyDlmndvlslgihrlWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekkl 92 
                      t++ke+k   v++vf+sva kyD+mnd++s+gihrlWk+f++++++v+rg++vlD+agGtgDl++k+s+ vge+g+v+++Din++mLk+g++kl
       CTQ29877.1  15 TVAKEQKadmVAHVFHSVAAKYDVMNDLMSFGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGETGRVMLADINDSMLKMGREKL 108
                      5678888888************************************************************************************ PP

                      HHHTSS.TEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE----SHHHHHHHHHHHH.HHHHHHHHHHS-H CS
  Ubie_methyltran  93 keegki.nieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsqayelyskevlPvlGkllakdl 185
                      ++ g + n+e++qanae+Lpf d++fD++t+sfGlrnvtDk+kaL+++yrvlkpGGrl+vlefsk++++ ls+ay++ys+++lP++G+l+akd 
       CTQ29877.1 109 RNIGIVgNVEYVQANAEALPFADNTFDCITISFGLRNVTDKEKALRSMYRVLKPGGRLLVLEFSKPIIEPLSKAYDAYSFHILPKVGELVAKDG 202
                      ****999*************************************************************************************** PP

                      HHHHHHHHHHHHS--HHHHHHHHHHTTEEEEEEEEEGGGTEEEEEEEE CS
  Ubie_methyltran 186 dsyryLvesirafPdqetlkeliedaGfksveyesltgGvvaihigvk 233
                      dsyryL+esir++Pdqetlk +++daGf++v+y++lt+G+va+h+g+k
       CTQ29877.1 203 DSYRYLAESIRMHPDQETLKGMMQDAGFENVDYYNLTAGIVALHRGYK 250
                      **********************************************98 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   1.7e-26     2e-23       1      97 []      67     164 ..      67     164 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 1.7e-26
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiar 91 
                      vLdl+ GtG+lt+++++ +g  ++v+  Di+++ml+  re++++ g+  nve+vq++ae+lpf+d++fD++++s++l  ++  d ekal+ ++r
       CTQ29877.1  67 VLDLAGGTGDLTAKFSRLVGeTGRVMLADINDSMLKMGREKLRNIGIvgNVEYVQANAEALPFADNTFDCITISFGLRNVT--DKEKALRSMYR 158
                      9******************779********************999999**************************9999887..677******** PP

                      HEEEEE CS
  Methyltransf_25  92 vLkpgG 97 
                      vLkpgG
       CTQ29877.1 159 VLKPGG 164
                      *****9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   4.1e-25   4.9e-22       1      96 []      68     168 ..      68     168 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 4.1e-25
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLk 89 
                      Ld++ GtG l++++ + +   +rv+  D+++ mlk+ +ek ++ g+  +ve+v+a+ae lpf+dn+fD++++s+ l +v d ekal+ ++RvLk
       CTQ29877.1  68 LDLAGGTGDLTAKFSRLVgetGRVMLADINDSMLKMGREKLRNIGIvgNVEYVQANAEALPFADNTFDCITISFGLRNVTDKEKALRSMYRVLK 161
                      89*************7777999***********************9************************************************ PP

                      EEEEEEE CS
  Methyltransf_11  90 pgGllvi 96 
                      pgG+l++
       CTQ29877.1 162 PGGRLLV 168
                      ****975 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   9.8e-22   1.2e-18       4     124 ..      64     181 ..      62     229 .. 0.83

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 9.8e-22
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkilee 96 
                      g +vlDl+ GtG+lt ++ +++g+ ++v++ Di+  +++  re++++ g+  nve  q+++e+l+  ++d++fD i+    l  ++d++k+l++
       CTQ29877.1  64 GQTVLDLAGGTGDLTAKFSRLVGETGRVMLADINDSMLKMGREKLRNIGIVgNVEYVQANAEALP--FADNTFDCITISFGLRNVTDKEKALRS 155
                      679**********************************************999*************..***********9999************ PP

  Methyltransf_31  97 iervlkpggilliedprllaelpakvee 124
                      + rvlkpgg+ll+ +++  +  ++ +++
       CTQ29877.1 156 MYRVLKPGGRLLVLEFS--KPIIEPLSK 181
                      ***************99..333333333 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   8.2e-19   9.8e-16      21     163 ..      62     233 ..      39     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 8.2e-19
  Methyltransf_23  21 raggrvLdiGcGtGillevl.rengf..svtgvDlspeaveiae.......kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdppellrq 104
                      r+g+ vLd++ GtG l+  + r  g    v + D+++ + ++ +          + + +q++++  ++ +++fd+I+ +++l +v d +++lr+
       CTQ29877.1  62 RRGQTVLDLAGGTGDLTAKFsRLVGEtgRVMLADINDSMLKMGReklrnigIVGNVEYVQANAEALPFADNTFDCITISFGLRNVTDKEKALRS 155
                      7889**********999999566676789********999999999*999866677778888889999************************** PP

  Methyltransf_23 105 iatllkpgGylllseplasl.....................kedrllldwlylvpagrhisffsarslkelleeaGlevv 163
                      +++ lkpgG+ll++e+ ++                        +++ ++++yl++    +   + ++lk ++++aG+e+v
       CTQ29877.1 156 MYRVLKPGGRLLVLEFSKPIieplskaydaysfhilpkvgeLVAKDGDSYRYLAES--IRMHPDQETLKGMMQDAGFENV 233
                      ****************9888999999999999999987764466666667777765..5555678*************99 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   8.2e-16   9.8e-13       1      99 []      68     166 ..      68     166 .. 0.92

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 8.2e-16
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhlkdirevldnirkl 92 
                      L++ +GtG+l++ + +   ++ ++   Di+ s+++  +ekl+ ++   + nve+ + +++ l+   ++fD +++s+ l ++ d++++l++++++
       CTQ29877.1  68 LDLAGGTGDLTAKFSRLVgETGRVMLADINDSMLKMGREKLRNIGI--VGNVEYVQANAEALPFAdNTFDCITISFGLRNVTDKEKALRSMYRV 159
                      89************999999*********************99997..5578888888777766689*************************** PP

  Methyltransf_12  93 LkpgGrl 99 
                      LkpgGrl
       CTQ29877.1 160 LKPGGRL 166
                      *****97 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0     3e-09   3.6e-06      71     171 ..      61     168 ..      51     181 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3e-09
                 --TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-GGGTTGGG-SEEEEEESSBBSS--......HHHHHT CS
        PCMT  71 lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDGrkGyeekaPYdaihvgaaapeiP......ealidQ 162
                 +++g+ vL++ +G+G lta ++rlvge+grv+  +   ++ +  +++l++ ++  nv  v +  +    +   +d i ++ +  ++       +++ + 
  CTQ29877.1  61 VRRGQTVLDLAGGTGDLTAKFSRLVGETGRVMLADINDSMLKMGREKLRNIGIVgNVEYVQANAEALPFADNTFDCITISFGLRNVTdkekalRSMYRV 159
                 67899***********************************************988****99999877777778******99998886332222457889 PP

                 EEEEEEEEE CS
        PCMT 163 LkeGGrlvv 171
                 Lk+GGrl+v
  CTQ29877.1 160 LKPGGRLLV 168
                 9****9986 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.9e-07   0.00035      79     147 ..      91     159 ..      74     169 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.9e-07
                 EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE----------HHHHHHHHHH CS
     UPF0020  79 lygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYse 147
                 ++ +D++ ++++ +re++++ g+ + +e++qa+a +L+ +++ +d i       + ++++kal+++Y+ 
  CTQ29877.1  91 VMLADINDSMLKMGREKLRNIGIVGNVEYVQANAEALPFADNTFDCITISFGLRNVTDKEKALRSMYRV 159
                 6668**********************************87889***98765555557888888999986 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   9.1e-07    0.0011      31     138 ..      63     169 ..      52     187 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.1e-07
                 TCSEEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTT.TSTTS-EEEEEE---STTTCHCHHHHHHHHHHHH CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleankle..vevvasdvle.eveekkfdlivsNPPfhagkatelavaeeliaeA 125
                 + ++vlDl+ G+G l+a++ +   e+  v l d++   l++ +e l++ ++   ve+v+ ++ +  ++++ fd+i     +++ ++      e+ +++ 
  CTQ29877.1  63 RGQTVLDLAGGTGDLTAKFSRLVGETGrVMLADINDSMLKMGREKLRNIGIVgnVEYVQANAEAlPFADNTFDCITISFGLRNVTD-----KEKALRSM 156
                 5678******************999877**********************997788888887662456999****98888887777.....55566677 PP

                 HHHEEEEEEEEEE CS
         MTS 126 keaLkegGeLliV 138
                  ++Lk+gG+Ll+ 
  CTQ29877.1 157 YRVLKPGGRLLVL 169
                 7899999999875 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       8.3   9.9e+03     173     189 ..       8      24 ..       6      36 .. 0.65
   2 !   16.6   0.0   4.5e-06    0.0054     110     161 ..     121     173 ..      89     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 8.3
                     HHCTTEEEEEEE--STT CS
  Methyltransf_8 173 ltklGfevkskdlsnkq 189
                      t++Gf+++ k+ + ++
      CTQ29877.1   8 TTHFGFQTVAKEQKADM 24 
                     56777877777666555 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 4.5e-06
                     ES-TTS-S--TT-EEEEEEES---.SS-HHHHHHHHHHHEEEEEEEEEEEEGG CS
  Methyltransf_8 110 acdlakvPledesvdvavfclslm.gtnladflkeanrvlkvGGllkvaevks 161
                       +   +P +d++ d + + + l  +t+ ++ l+ ++rvlk+GG l v e + 
      CTQ29877.1 121 QANAEALPFADNTFDCITISFGLRnVTDKEKALRSMYRVLKPGGRLLVLEFSK 173
                     4566789********999999995389*********************99765 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.9e-05     0.094      38     101 ..      61     124 ..      54     141 .. 0.88
   2 ?    0.2   0.0      0.42   5.1e+02      57      75 ..     155     173 ..     147     201 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.9e-05
       GCD14  38 lkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDv 101
                 ++ G  v++   G+g l+ +++r v+ tG++   +  ++  +  re++r+ +++++v   + ++
  CTQ29877.1  61 VRRGQTVLDLAGGTGDLTAKFSRLVGETGRVMLADINDSMLKMGREKLRNIGIVGNVEYVQANA 124
                 7899*************************************************99987666555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.42
       GCD14  57 aiartvaPtGhlftfefhe 75 
                 ++ r ++P G+l  +ef +
  CTQ29877.1 155 SMYRVLKPGGRLLVLEFSK 173
                 6889************976 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.1e-05     0.049       8      71 ..      63     127 ..      60     140 .. 0.83
   2 ?   -1.1   0.0       1.1   1.3e+03     117     135 ..     149     167 ..     144     224 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.1e-05
                      TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--.SEEEEES-CTCC CS
  Methyltr_RsmB-F   8 eeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvt.ntivleaDarki 71 
                       ++t+lDl+ + G  T+  + l+ ++g+v+  d+n++ lk   e l+ +g+  n+  ++a a   
       CTQ29877.1  63 RGQTVLDLAGGTGDLTAKFSRLVGETGRVMLADINDSMLKMGREKLRNIGIVgNVEYVQANAEAL 127
                      6799**************************************99999999875666666665554 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
                      HHHHHHHHCCCEEEEEEEE CS
  Methyltr_RsmB-F 117 qkellsaaidllkkgGvlv 135
                      +++ l ++  +lk+gG l+
       CTQ29877.1 149 KEKALRSMYRVLKPGGRLL 167
                      5566788888889988876 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   8.7e-05       0.1      11     102 ..      61     160 ..      54     168 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.7e-05
        MetW  11 ikpgsrvldlGcGdGelle....llkeekqvdgrGleldeegvaecvak..Gl..sviqgdldkdlenfedksfdyvvlsqtlqatrnpkevldellri 101
                 ++ g +vldl  G G+l      l+ e+  v    ++ +   + +   +  G+  +v   +++ +   f+d++fd + +s  l+++ + ++ l+ + r+
  CTQ29877.1  61 VRRGQTVLDLAGGTGDLTAkfsrLVGETGRVMLADINDSMLKMGREKLRniGIvgNVEYVQANAEALPFADNTFDCITISFGLRNVTDKEKALRSMYRV 159
                 67889999999999999751111445555555555555544444433341133223444566677778*****************************99 PP

        MetW 102 g 102
                  
  CTQ29877.1 160 L 160
                 5 PP

>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.8e-05       0.1      35     121 ..      64     151 ..      21     170 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.8e-05
       Rsm22  35 Pkslldvgegpgtalwaaselweeleevlvidaseelleiskelaadapelkeaalrrsvirealeleea..dLviisyvLleledesr 121
                  +++ld+++g+g  +   s l  e+ +v++ d  +++l++++e ++++  + ++++ +    eal + ++  d ++is+ L +++d+++
  CTQ29877.1  64 GQTVLDLAGGTGDLTAKFSRLVGETGRVMLADINDSMLKMGREKLRNIGIVGNVEYVQANA-EALPFADNtfDCITISFGLRNVTDKEK 151
                 5789*********************************************999997777666.7788877789************99665 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.29   3.5e+02      31      66 ..      36      73 ..       6     103 .. 0.74
   2 ?    9.8   0.0   0.00034      0.41     155     198 ..     127     169 ..      98     174 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.29
                    TSTCCCCHHHHHHHHHHHHHHT...SSS-ECEEEEET-T CS
  NNMT_PNMT_TEMT 31 edaaeeqvvlfaLknllqtlat...gekkgdtllDiGaG 66
                     d++ ++++ f ++ l ++++    g ++g+t+lD+  G
      CTQ29877.1 36 YDVM-NDLMSFGIHRLWKRFTIdcsGVRRGQTVLDLAGG 73
                    3444.7888899999999886511145778999999655 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00034
                     SS..EEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE CS
  NNMT_PNMT_TEMT 155 lpkkadvvvtifcleaacedleeylralrnlasllkpGGhlvlg 198
                     lp  ad     +++    +++    +alr++ ++lkpGG+l+++
      CTQ29877.1 127 LP-FADNTFDCITISFGLRNVTDKEKALRSMYRVLKPGGRLLVL 169
                     44.3666666677777778888889***************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 2096.93
//
Query:       CTQ29878.1  [L=201]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.1e-20   71.2   0.1    1.2e-19   70.6   0.1    1.2  1  SCP2          SCP-2 sterol transfer family
  ------ inclusion threshold ------
       0.05   13.9   0.0       0.07   13.4   0.0    1.2  1  Alkyl_sulf_C  Alkyl sulfatase C-terminal
      0.092   12.7   1.4       0.19   11.7   1.4    1.5  1  Sugarporin_N  Maltoporin periplasmic N-terminal extension


Domain annotation for each model (and alignments):
>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.1     2e-23   1.2e-19       1     100 [.      15     112 ..      15     113 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 2e-23
                 HHHHHHHHHHHHHHHHHCCH-E.EEEEEECTC.TEEEEEETTSTEEESSCTTBS-SEEEEEEHHHHHHHHCTSS-HHHHHHTTSSEEEC-HHHHHHHHH CS
        SCP2   1 lnqllerlkdpekkealkklag.vlrfdltdlkgsltldlkegqldvaakdegkadvtlslsledllelaegklnpqkafmqgkLkieGDielaqklea 98 
                 ln++l r  d++ k+a ++l g vlr++l+d +++++l+++e+q+dv+++++g+ad+t++ +l+ l++l +++ + ++++ +g L+++GD++++q++ +
  CTQ29878.1  15 LNTFLWR--DKALKPARQRLLGkVLRVQLQDFATPVVLVFSERQVDVLSAWDGEADCTVITRLSVLPKLRNRQ-QLTALIRSGDLEVQGDLQVVQNMVS 110
                 6788888..99**************************************************************.*********************9988 PP

                 HH CS
        SCP2  99 ll 100
                 l+
  CTQ29878.1 111 LC 112
                 86 PP

>> Alkyl_sulf_C  Alkyl sulfatase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.2e-05      0.07      64     118 ..      64     116 ..      36     120 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.2e-05
                   --TTSSEEEEE-HHHHHHHHTTSS-HHHHHHTTTEEEEE-TCHHHHHHCTB---- CS
  Alkyl_sulf_C  64 qaddadltvtltreqLvalllgkatlgkevaagklkieGdaealakllslldefd 118
                   +  +ad tv +  + L +l  + ++l++++ +g+l+++Gd ++++ ++sl d ++
    CTQ29878.1  64 D-GEADCTVITRLSVLPKLR-NRQQLTALIRSGDLEVQGDLQVVQNMVSLCDLAE 116
                   3.899****99999999997.677999**********************987654 PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.4   3.2e-05      0.19      22      40 ..     178     196 ..     171     200 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.2e-05
  Sugarporin_N  22 aaasltiEaRLaaLEkrLq 40 
                   a ++ +iE  LaaLEkrL+
    CTQ29878.1 178 AEETTAIERALAALEKRLE 196
                   56789*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1773.51
//
Query:       CTQ29879.1  [L=546]
Description: 2-octaprenylphenol hydroxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-35  120.2   0.0    1.1e-34  119.1   0.0    1.6  1  ABC1      ABC1 family
  ------ inclusion threshold ------
      0.092   12.6   0.3       0.55   10.1   0.3    2.4  1  APH       Phosphotransferase enzyme family
       0.22   12.1   0.2       0.51   10.9   0.2    1.6  1  LPAM_1    Prokaryotic membrane lipoprotein lipid attachment s


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.0   1.8e-38   1.1e-34       5     119 .]     116     232 ..     112     232 .. 0.98

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 1.8e-38
        ABC1   5 kkleeiFaefdeePiAaASiaqVhrAklk.sgeeVavKvqrpgvkkriksDlellkllakllkkflkelr.ldleelvdefskslleEldferEAknae 101
                  ++e++F++f+ eP+A+ASiaqVh+A+lk +g+eV++Kv rp++   ik+D++l+++la+++ ++l++ r l+ +e+v+e++k+ll El+++rE++na 
  CTQ29879.1 116 LPVETWFDDFSVEPLASASIAQVHTARLKeNGKEVVIKVIRPDILPIIKADMKLIYRLARWVPRLLPDGRrLRPQEVVREYEKTLLDELNLLRESANAI 214
                 589**************************99*************************************999**************************** PP

        ABC1 102 kfrenfaklkevkvPkvy 119
                 ++r+nf++ ++++vP+vy
  CTQ29879.1 215 QLRRNFEDSPMLYVPEVY 232
                 *****************8 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   9.3e-05      0.55     164     190 ..     280     309 ..      55     315 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9.3e-05
                 S-EEEE-SS-SGGGEEEC.....TTEEEEE CS
         APH 164 lptvllHgDlhpgNllvd...pddgrvtGv 190
                 ++ ++ H D hpgN+ v    p+d++ +G+
  CTQ29879.1 280 FRDSFFHADMHPGNIFVSyehPEDPQYIGI 309
                 57899*************999888888664 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   8.5e-05      0.51       3      16 ..     500     513 ..     499     513 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.5e-05
      LPAM_1   3 KillalgalllLsG 16 
                 ++l+ +ga+llLsG
  CTQ29879.1 500 RYLFGIGAVLLLSG 513
                 89***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4037.19
//
Query:       CTQ29880.1  [L=83]
Description: TatABCE protein translocation system subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-15   54.6   0.6    7.9e-15   53.9   0.6    1.5  1  MttA_Hcf106  mttA/Hcf106 family
  ------ inclusion threshold ------
       0.06   12.1   0.0       0.06   12.1   0.0    1.2  1  DUF2207      Predicted membrane protein (DUF2207)
      0.074   12.8   0.0      0.085   12.7   0.0    1.1  1  FAM209       FAM209 family
      0.083   13.9   0.0       0.11   13.5   0.0    1.1  1  DUF4834      Domain of unknown function (DUF4834)
      0.087   12.7   0.1        0.1   12.5   0.1    1.0  1  DUF1980      Domain of unknown function (DUF1980)
       0.09   13.8   1.4       0.84   10.7   1.4    2.0  1  Conotoxin    Conotoxin


Domain annotation for each model (and alignments):
>> MttA_Hcf106  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.6   2.6e-18   7.9e-15       1      47 [.       4      50 ..       4      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 2.6e-18
                 S-HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH-- CS
  MttA_Hcf106  1 lgapelliIlvValllFGpkkLPEvaraLGktLreFkkavkeleeen 47
                 +++++lli++v+++llFG kkL  ++  LG +++ Fkka++++++ +
   CTQ29880.1  4 ISIWQLLIVVVIVVLLFGTKKLSSLGSDLGASIKGFKKAMSDDDKPE 50
                 79***************************************998842 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     2e-05      0.06     416     457 ..       6      45 ..       1      76 [. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2e-05
     DUF2207 416 llillliaiivlllfsrllgrrteeGaellakwkgFkkyLeD 457
                 ++ ll++++iv+llf   +++++  G++l a +kgFkk ++D
  CTQ29880.1   6 IWQLLIVVVIVVLLF--GTKKLSSLGSDLGASIKGFKKAMSD 45 
                 444555555666665..689******************9995 PP

>> FAM209  FAM209 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.8e-05     0.085      38      99 ..       2      65 ..       1      76 [. 0.72

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.8e-05
      FAM209 38 gskllWllfvvvlyvilkfrgdsekskeqtppglrgcsf...rsplkKkqkaspskdyafntltq 99
                g  ++W l++vv+ v+l f  ++  s+  + +g     f    s   K +k +p+ d++ +t+  
  CTQ29880.1  2 GGISIWQLLIVVVIVVLLFGTKKL-SSLGSDLGASIKGFkkaMSDDDKPEKSAPDADFTAKTIAD 65
                66789************9976654.44555555444444001566789999********999876 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.7e-05      0.11      16      86 ..       6      79 ..       3      82 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.7e-05
     DUF4834 16 viglsilsvilrtvfglgsrkkss.....ksaqkqfgnstnsnqqksqsrsetkeegeiieeersekeakrkkiFe 86
                ++ l i+ vi+  +fg+ +   ss         k+f+++ +++ + ++s +  + + ++i ++++  ++ + k  +
  CTQ29880.1  6 IWQLLIVVVIVVLLFGTKK--LSSlgsdlGASIKGFKKAMSDDDKPEKSAPDADFTAKTIADKQDDAKKDETKRHD 79
                5666666666666666222..2222233444456677777777777776666666666666666655444445444 PP

>> DUF1980  Domain of unknown function (DUF1980)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   3.4e-05       0.1      77     152 ..       9      80 ..       4      83 .] 0.57

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.4e-05
     DUF1980  77 ilviPlllglllptkvldssiakakGfnfslakeskseqkedegtqeqslkpdtssyvtkdgydkemkkeakklsk 152
                 +l++ ++++ll+ tk l ss+ +  G +++  k+   ++++d++ ++  ++ d  ++   d++d+++k+e+k+ +k
  CTQ29880.1   9 LLIVVVIVVLLFGTKKL-SSLGSDLGASIKGFKK---AMSDDDKPEKSAPDADFTAKTIADKQDDAKKDETKRHDK 80 
                 78888999999999987.4566666777777773...455555555555555533333334444444444444333 PP

>> Conotoxin  Conotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.4   0.00028      0.84       3      45 ..      10      53 ..       8      83 .] 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00028
                XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Conotoxin  3 LtcvlivavLllt.tlvtadldgdqpadrkakrledrkseekkk 45
                L +v+iv++L+ t +l+   +d     + ++k+++d++++ek+ 
  CTQ29880.1 10 LIVVVIVVLLFGTkKLSSLGSDLGASIKGFKKAMSDDDKPEKSA 53
                67888888888888777777777777788888899888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       957  (0.0533772); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 681.99
//
Query:       CTQ29881.1  [L=178]
Description: TatABCE protein translocation system subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0028   16.8   1.0     0.0034   16.6   1.0    1.1  1  FH2            Formin Homology 2 Domain
  ------ inclusion threshold ------
      0.013   14.8   7.2      0.055   12.8   6.6    2.2  1  MttA_Hcf106    mttA/Hcf106 family
      0.017   15.5   0.0      0.024   15.0   0.0    1.3  1  Fas_alpha_ACP  Fatty acid synthase subunit alpha Acyl carrier
      0.075   12.8   0.1       0.12   12.2   0.1    1.3  1  DUF1854        Domain of unknown function (DUF1854)
      0.092   11.8   4.2      0.056   12.5   2.6    1.4  1  RapA_C         RNA polymerase recycling family C-terminal
       0.57   10.6   9.7       0.79   10.1   9.7    1.1  1  CCDC53         Subunit CCDC53 of WASH complex
        2.2    8.4   8.1        3.1    7.9   1.1    2.2  2  ATP-synt_B     ATP synthase B/B' CF(0)


Domain annotation for each model (and alignments):
>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.0   1.3e-06    0.0034     259     331 ..      55     127 ..      29     137 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.3e-06
                 GGGGHHHHTTTHHHCCTS-HH.HHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHH CS
         FH2 259 evldfsseLknvkkaakvnle.slekevkklekglkklekelessekkeepsdkflevlkeflkeaeeklkkle 331
                 ++++f++ Lk+v+ka+  nl+ +l++++++l++  + ++++ ++++  e+ sd+  ++l++++k +e + +++ 
  CTQ29881.1  55 KLQEFQESLKKVEKASLNNLTpELKASMDELREAAESMKRSYSAHDP-EKASDEANTILNPVVKGSEAQRQDVT 127
                 46677788888888777777546777777777777777777777777.99999999999999999988877765 PP

>> MttA_Hcf106  mttA/Hcf106 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   6.6   2.2e-05     0.055       1      25 [.       4      28 ..       4     100 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.2e-05
                 S-HHHHHHHHHHHHHHS-TTTHHHH CS
  MttA_Hcf106  1 lgapelliIlvValllFGpkkLPEv 25
                 +g+ ell+++v+ l++ Gp++LP +
   CTQ29881.1  4 IGFSELLLVFVIGLIVLGPQRLPVA 28
                 799********************65 PP

>> Fas_alpha_ACP  Fatty acid synthase subunit alpha Acyl carrier domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   9.4e-06     0.024      32      77 ..      36      82 ..      16     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9.4e-06
  Fas_alpha_ACP 32 ikdlvgGkStlqNEilgdLq.aEfgslpekaedlpleelaealqesf 77
                   i++l     t+qNE+  +L+ +Ef++   k+e  +l++l+ +l++s 
     CTQ29881.1 36 IRTLRSLATTVQNELAQELKlQEFQESLKKVEKASLNNLTPELKASM 82
                   566666678**********867******************9999875 PP

>> DUF1854  Domain of unknown function (DUF1854)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   4.5e-05      0.12      29      66 ..      33      70 ..      27      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.5e-05
     DUF1854 29 laiiedladLdeesrklleeeLarrefvpeIkrIksvs 66
                +++i++l+ L++  ++ l++eL+ +ef  + k++++ s
  CTQ29881.1 33 VGWIRTLRSLATTVQNELAQELKLQEFQESLKKVEKAS 70
                79********************************9877 PP

>> RapA_C  RNA polymerase recycling family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.6   2.2e-05     0.056     236     310 ..      39     113 ..      36     123 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
                 ---B-SSSS-B--S-STTTSTT-------STTSSTTSSS-SHHHHTTTTTTTTSSSHHHHHHHHHHHHHHHHHHH CS
      RapA_C 236 irllldekgkdlsekvsfeslnkqlkkvkkklarklvkakrkeiekllkkaeklaeeqaeelieeakaraeqels 310
                 +r l  + +++l+++++ ++++++lkkv+k  +++l    ++ +++l ++ae++ ++  ++  e+a+++a++ l+
  CTQ29881.1  39 LRSLATTVQNELAQELKLQEFQESLKKVEKASLNNLTPELKASMDELREAAESMKRSYSAHDPEKASDEANTILN 113
                 788899999***********************************************9999999999999988765 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   9.7   0.00031      0.79      19     108 ..      52     161 ..      42     176 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00031
      CCDC53  19 cEekLvevekrlqrle.itlalLEakLs.Sipgleeveaeaaeastsddn..................aarkgppppppsseaaaaaaqaeeasqaees 97 
                  E kL e++++l+++e ++l+ L   L+ S+++l+e+ ++ + + +++d                   +a+ + ++p+++  +a+a+a+a+ + ++e+s
  CTQ29881.1  52 QELKLQEFQESLKKVEkASLNNLTPELKaSMDELREAAESMKRSYSAHDPekasdeantilnpvvkgsEAQRQDVTPATAEHQASAPAHAPDPVAEEQS 150
                 5889***********9668999*****99*******999977666666658999******999988874444444444444444444444444444444 PP

      CCDC53  98 aeeeaeeqees 108
                 a++++ + e++
  CTQ29881.1 151 ASPADLQAEKT 161
                 44444444333 PP

>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.3     0.017        43      74     122 ..      43      92 ..      37      99 .. 0.79
   2 ?    7.9   1.1    0.0012       3.1      61     116 ..     102     157 ..      90     167 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.017
  ATP-synt_B  74 Akkeaeklkeei.eaeaeaeaerlkesAaaeIeqekdralaeLreqvval 122
                 A+   ++l++e+  +e ++++++++++  +++  e ++ ++eLre + ++
  CTQ29881.1  43 ATTVQNELAQELkLQEFQESLKKVEKASLNNLTPELKASMDELREAAESM 92 
                 555555566655168999**************************998765 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0012
  ATP-synt_B  61 keAraeAaeiiknAkkeaeklkeeieaeaeaeaerlkesAaaeIeqekdralaeLr 116
                 ++A +eA++i + + k +e ++++   +++++ ++  + A + ++ e+++  a+L 
  CTQ29881.1 102 EKASDEANTILNPVVKGSEAQRQDVTPATAEHQASAPAHAPDPVAEEQSASPADLQ 157
                 68999***************************999999999999999988777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1716  (0.0957109); expected 358.6 (0.02)
Passed bias filter:                      836  (0.0466284); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 1432.86
//
Query:       CTQ29882.1  [L=259]
Description: TatABCE protein translocation system subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-65  219.8  23.0    4.3e-65  219.4  23.0    1.2  1  TatC      Sec-independent protein translocase protein (TatC)


Domain annotation for each model (and alignments):
>> TatC  Sec-independent protein translocase protein (TatC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.4  23.0   2.4e-69   4.3e-65       2     207 .]      12     221 ..      11     221 .. 0.97

  Alignments for each domain:
  == domain 1  score: 219.4 bits;  conditional E-value: 2.4e-69
                 HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCCHHHHC..CTTS-EE--SSS-HHHHHHHHHHHHHHHHSHHHHHHHHHCCCTTTTS---STTTHHH CS
        TatC   2 hLeeLrkrlirallavaiafiitfvfaeeliafllepleea.eeevelivlspleafllklkvslvaglvlasPvilyqlwafvapgLykherrlvlvf 99 
                 hL eLrkrl+ +++a++++f+++++fa+++++++ +pl ++ + ++++i+++++ +f++ +k++++++++l++P+ilyq+wafvap+Lykherrlv+++
  CTQ29882.1  12 HLIELRKRLLNSIIAILVIFLALVYFANDIYQLVSAPLISKmPVGATMIATDVASPFFTPIKLTFMVSVILSVPIILYQVWAFVAPALYKHERRLVVPL 110
                 ***********************99***************999999***************************************************** PP

                 HHHHHHHHHHHHHHHHHTHHHHHHHHHT...TTTSSTTEEHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTTSS-HHHHHTTHHHHHHHHHHHHHHH-S CS
        TatC 100 liaslllfllGaafayfvvlplvlkfll...seevepllslseylsfvlllllafgiaFelPlvlvllarlglvsaetlrkkrryaivvilvvaavltP 195
                 l++s+llf++G+afayfvv+pl++ fl+    e+v    ++++yl+fv+ l++afg++Fe+P+ +vll  +g+ ++e lrkkr y++v+++vv+++ltP
  CTQ29882.1 111 LVSSTLLFYIGMAFAYFVVFPLAFGFLThaaPEGVLVSTDIRSYLDFVMALFMAFGVSFEVPVAIVLLCWMGVTTPEDLRKKRPYVLVGAFVVGMLLTP 209
                 ****************************7665556667************************************************************* PP

                 .SHHHHHHHHHH CS
        TatC 196 pdvisqlllavP 207
                 pdv+sq+lla+P
  CTQ29882.1 210 PDVFSQTLLAIP 221
                 ***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       918  (0.051202); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2090.90
//
Query:       CTQ29883.1  [L=263]
Description: DNase, magnesium-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-68  228.5   0.0    9.3e-68  228.3   0.0    1.0  1  TatD_DNase  TatD related DNase


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.3   0.0   5.2e-72   9.3e-68       1     254 [.       2     256 ..       2     257 .. 0.98

  Alignments for each domain:
  == domain 1  score: 228.3 bits;  conditional E-value: 5.2e-72
                 EEEEE-TTSCCCTTTHHHHHHHHHHTTEEEEEEE-SSGGGHHHHHHHHTT.TTTEEEEE---GGGGGCC.CCHHHHHHHHHHCCCTSEEEEEEEEEET- CS
  TatD_DNase   1 iDaHcHldskefeedreeileraeeagvaavvvvgtsskdskavlelakkypnkvyavlGiHPnevdeasedlleelkelanvkhskvvaiGeiGLDyy 99 
                 +D  ++l+s++f++d +e+++ra +agv  ++ +gt++++s+++ +la++y++ ++ ++G+HP++  ++++ + e++  l  + +++vvaiGe+GLD+ 
  CTQ29883.1   2 FDIGVNLTSSQFSRDHDEVVARALAAGVNGMLLTGTNLAESQQAQKLASRYSG-CWSTAGVHPHDGSSWTPAVAEAIYTL--AGEPQVVAIGECGLDF- 96 
                 79**************************************************9.**************************..****************. PP

                 CCCCCGHHHHHHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHHHHCGGCCS.EEEETT--S-HHHHHHHHHTTEEEEE-GGGGTTT.THHHHHHHHHS- CS
  TatD_DNase 100 sreestkeaqeevFeeqlrlAkelklplviHlrkaeedlleilkeaaeaka.kvvlHsfsgsaeeakkflklgyyislsglltfkn.akelrelvkavp 196
                 +r+ st+++qe +F +ql+lA+el+ p+++H+r+a++ +l +lk   e+ + + vlH+f+gs  e++++l+lg++i+++g+++ ++ + elrel+ a+p
  CTQ29883.1  97 NRNFSTPHEQEVAFSAQLALAAELSMPVFLHCRDAHDRFLTLLKPWLEK-IpGAVLHCFTGSRSEVQECLDLGLFIGITGWVCDERrGLELRELLPAIP 194
                 9********************************************9765.44********************************99899********** PP

                 GGGEEE---TTSSEE...CCCTT.SE--GGGHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  TatD_DNase 197 ldrlLiETDaPyltp...kpyrg.krnepanvayvveklaelkaltleelaeitaeNakrlf 254
                  +rlL+ETDaPyl p   kp+   +rnepa+++++++ +a+ ++++ ++l+++t +N+++lf
  CTQ29883.1 195 AERLLLETDAPYLLPrdlKPKPAsRRNEPAYLPHILASVAAWRGEEAQWLEAQTDANVRALF 256
                 ***************999888888*************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2142.18
//
Query:       CTQ29884.1  [L=162]
Description: DNA-binding transcriptional antiterminator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-18   67.3   0.0    1.8e-18   66.8   0.0    1.2  1  NusG      Transcription termination factor nusG
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.24   11.4   0.0    1.5  1  KOW       KOW motif


Domain annotation for each model (and alignments):
>> NusG  Transcription termination factor nusG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0     2e-22   1.8e-18       2      94 ..       3      96 ..       2      97 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 2e-22
                EEEEEEE-TTTHHHHHHHHHHHCT-EEE-SCEEEEEEETTEEE....CSSTTEEEEEE---CHHHHHHHCSTTEEEE-EETTSSCC-EB-HHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        NusG  2 kWYvlqvepgkekkvkenLleeeglevivPaeekveirqgkkk....klfpgyifikadmndkllmairktpgVtgfvrvggeskpvplseeevqni 94
                 WY+l+++ g+ ++++e+L e++++++++P++  ++i +gk++    +lfp+y+fi++d +  ++++i  t+gV +fvr+g    p++++ + ++++
  CTQ29884.1  3 AWYLLYCKRGQLQRAQEHL-ERQSVNCLMPTIALEKIIRGKRTmvsePLFPNYLFIEFDPEVIHTTTISATRGVNNFVRFGA--LPAIVPSAVIHQL 96
                7******************.****************999**999***************999******************99..8999999988875 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.6e-05      0.24       1      17 [.     112     128 ..     112     129 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.6e-05
                 TTSEEEESSSTTTTCEE CS
         KOW   1 pGdhVkVvsGphkGktG 17 
                 +Gd V +++G ++G ++
  CTQ29884.1 112 EGDSVLITDGAFEGLEA 128
                 59************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1406.11
//
Query:       CTQ29885.1  [L=491]
Description: 3-octaprenyl-4-hydroxybenzoate decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.7e-173  576.5   0.0   3.1e-173  576.3   0.0    1.0  1  UbiD      3-octaprenyl-4-hydroxybenzoate carboxy-lyase


Domain annotation for each model (and alignments):
>> UbiD  3-octaprenyl-4-hydroxybenzoate carboxy-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  576.3   0.0  1.7e-177  3.1e-173       2     406 .]      11     431 ..      10     431 .. 0.98

  Alignments for each domain:
  == domain 1  score: 576.3 bits;  conditional E-value: 1.7e-177
                 HHCCCTTSEEEEESEB-TBTHHHHHHHHHHHHT--EEEEEEBTTB.TT-EEEE-TTS-HCHHHHHHTS...-GHHHHHHHHHHHHHS..-......... CS
        UbiD   2 ealekagelvrikeevdpelEiaeiarrvleeggpallFenvkgkgskfpvltnlfgtrervalalgl...ssleeileklaellepkpp......... 88 
                   le++gel+ri+ +vdp+lEi+eia+r+l++ggpallFen+kg+   +pvl+nlfgt++rval++g    ssl+e+++ la l+ep+pp         
  CTQ29885.1  11 TLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGY--TMPVLCNLFGTPRRVALGMGQedvSSLREVGKLLAFLKEPEPPkgfrdlfdk 107
                 579***************************************866..7********************999999*************9999******** PP

                 .........---EE--GCG-GGGSEEECCCCC--HHHS---BSSTTSSS-EEECEEEEEE-TTTT-EEEEEEEEEEEETTEEEE--TTTHCHHHHHHHH CS
        UbiD  89 .........ippkvvesekapcqeevvlegddvdLskLPvltlwpgDgGpyitlglvitrdpetgkrnlgiyRmqvldknklglhwqihkggaehlrka 178
                          +p k+++   apcq+++ ++gddvdL+k+P++t+wp+D++p+it+gl++tr p+++++nlgiyR+q+++knkl+++w++h+gga +++++
  CTQ29885.1 108 lpqfkqvlnMPTKRLR--GAPCQQKI-IQGDDVDLNKIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDFQEW 203
                 *******999999995..59***777.79********************************************************************** PP

                 HHCC.T--EEEEEEES--HHHHHHCTS--TTT-TCHHHHHHHHTS--EEEE-SSSSSEEETT-SEEEEEEEECCEEEECTTTC-TTSCEEC--CCEEEE CS
        UbiD 179 kkkg.geplpvavaiGvdPaltlaAvaplPeglsElefaGalrgepvelvkcetvdlevpadAEivleGeidpgetapEGPfgdhtGyysevrdefpvf 276
                 +++  ge++pv+va+G+dPa++l Av+p+P++lsE++faG+lrg+++e+vkc ++dlevpa+AEivleG+i++ge+apEGP+gdhtGyy+ev d+fpvf
  CTQ29885.1 204 CAARpGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCVSNDLEVPASAEIVLEGYIEAGEMAPEGPYGDHTGYYNEV-DSFPVF 301
                 **99999**********************************************************************************999.67**** PP

                 EEEEEEE-TT-EEEE-SSSCCSHHHHCHHHHHHHHHHHHHHCCSTTEEEEEE-GGGTTTCEEEEECHHHTCCHHHHHHHHHHCCTTGGC-SEEEEEEET CS
        UbiD 277 kVtaithRkdpiypttvvgkppeedallgkalealflpllkkqvpevkdvhlpeeggfhllavvsikkrypghakkvmealwalkqqlsltKlvivvDe 375
                 +Vt+it R+d+iy++t++g+pp+e+a+lg+al+++f+p+l+kq+pe++d++lp+eg++++lavv +kk+y+ghak+vm+++w++ +q+++tK+viv+D+
  CTQ29885.1 302 TVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDD 400
                 *************************************************************************************************** PP

                 TS-TTSHHHHHHHHHHC--CCCCEEEECCCE CS
        UbiD 376 dvdvrdlkevlwaiatrvdpdrDlviiegtr 406
                 dv+ rd+++v+wai+tr+dp+rD+v++e+t+
  CTQ29885.1 401 DVNARDWNDVIWAITTRMDPARDTVLVENTP 431
                 ****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 4149.54
//
Query:       CTQ29886.1  [L=233]
Description: flavin reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-21   76.1   0.0      5e-21   75.4   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    2.5e-05   24.5   0.0    7.8e-05   23.0   0.0    1.7  2  FAD_binding_6  Oxidoreductase FAD-binding domain
  ------ inclusion threshold ------
      0.056   13.5   0.0      0.083   13.0   0.0    1.3  1  FAD_binding_8  FAD-binding domain
       0.21   11.7   0.0       0.33   11.1   0.0    1.3  1  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   1.1e-24     5e-21       1     108 [.     108     211 ..     108     212 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 1.1e-24
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    +iagGtG+++vrs+l  +l++ ++++ +++++G r+ ++l+  +ele+l+ k+p+ l++ +vv+++e+gw+g+ g+v +a+l+++    ++e+++y
     CTQ29886.1 108 LIAGGTGFSYVRSILLSALAR-NPDRDIAIYWGGREAKHLYDLAELEALSIKHPN-LRIEPVVEQPEEGWRGRSGTVLTAVLQDYGT--LAEHDIY 199
                    7*******************8.888******************************.9******************************..9****** PP

                    EECSHHHHHHHH CS
  NAD_binding_1  97 vCGppgMikavr 108
                    ++G+ +M+k +r
     CTQ29886.1 200 IAGRFEMAKIAR 211
                    *********987 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.7e-08   7.8e-05       2      96 ..       6      95 ..       5      97 .. 0.78
   2 ?   -1.4   0.0      0.69   3.1e+03      68      94 ..     135     161 ..     133     165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.7e-08
                   EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHH.HCS-TT-EEEEEEEE-S CS
  FAD_binding_6  2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvypgGkmsqaL.delkigdtleikGPlGk 96
                   +k+t++e +++ + ++r+    +++ + +++Gq++++ ++   e+  R+++++s++ e+ ++el++   +     +a  d++     +e++ P+G+
     CTQ29886.1  6 CKVTSVEAITDTVYRVRLV---PEAAFSFRAGQYLMVVMD---ERDKRPFSMASTPAEQEFIELHIGASELNLYAMAVmDRILKEREIEVDIPHGE 95
                   7899999999887666664...567789*********999...5556*******************887666666665566666666777666665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.69
                    E--TT-HHHHHHHCS-TT-EEEEEEEE CS
  FAD_binding_6  68 kvypgGkmsqaLdelkigdtleikGPl 94 
                     +y gG+  ++L  l+  + l+ik P 
     CTQ29886.1 135 AIYWGGREAKHLYDLAELEALSIKHPN 161
                    578999999999999999999999886 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.9e-05     0.083       5      70 ..       7      67 ..       3      95 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
  FAD_binding_8  5 skakvalleedliklkvskpkkslkykaGqyvyinipslsklfwqsHPFtiasape.ddklslvikv 70
                   ++ +v+ + + + ++++      + + aGqy+ + + +  k      PF++as+p  +++++l+i +
     CTQ29886.1  7 KVTSVEAITDTVYRVRLVPEAA-FSFRAGQYLMVVMDERDKR-----PFSMASTPAeQEFIELHIGA 67
                   5566777777777777776665.*************777745.....*******98799*****965 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.3e-05      0.33       4      52 ..     106     149 ..     104     166 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.3e-05
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   4 vllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewf 52 
                    ++l+agG+G++++ sil   l++        + i ++w  re ++l  +
     CTQ29886.1 106 LILIAGGTGFSYVRSILLSALARNP-----DRDIAIYWGGREAKHLYDL 149
                    79**************999887775.....6899999999988877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1950.17
//
Query:       CTQ29887.1  [L=387]
Description: 3-ketoacyl-CoA thiolase (Fatty oxidation complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-86  289.2   0.3    3.7e-86  288.7   0.3    1.2  1  Thiolase_N     Thiolase, N-terminal domain
    2.8e-51  172.3   0.2    2.8e-51  172.3   0.2    1.7  2  Thiolase_C     Thiolase, C-terminal domain
    2.5e-05   24.0   0.5    2.5e-05   24.0   0.5    1.8  2  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
     0.0011   18.8   0.2       0.41   10.5   0.1    2.5  2  ACP_syn_III    3-Oxoacyl-[acyl-carrier-protein (ACP)] synthas


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.7   0.3   8.2e-90   3.7e-86       1     260 []       4     254 ..       4     254 .. 0.99

  Alignments for each domain:
  == domain 1  score: 288.7 bits;  conditional E-value: 8.2e-90
                 EEEEEEEEE--EE.TTSTTTTS-HHHHHHHHHHHHHHHHT.S-GGGCCEEEEEHSSCT.TSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigk.fggslkdlsaeeLlaealkallekag.vdpeevdevivGnvlqa.gegqniarqaalkagipeevpavtvnkvcsSglkavalaa 96 
                 vviv+a rtp+g+ +gg+++ ++ae+L+a+++++ll++++ ++++++d++++G+v q+ ++g niar+aal a+ip++vpa tvn++c+S+++a+++a+
  CTQ29887.1   4 VVIVDAIRTPMGRsKGGAFRHVRAEDLSAHLMRSLLSRNPsLEASAIDDIYWGCVQQTlEQGFNIARNAALLAEIPHSVPANTVNRLCGSSMQALHDAT 102
                 8************999******************************************9**************************************** PP

                 HHHHTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTT CS
  Thiolase_N  97 qsiaageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkd 195
                 ++i++g+a+v+++gGvE+m+++p+++ +d++ gl+ + +ka +++              Gltae+la+ ++isRe+qd+fA++sh++a+aa+++g+Fk 
  CTQ29887.1 103 RMIMTGDASVCLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMM--------------GLTAEMLARLHGISREMQDQFAARSHARAWAATQSGAFKA 187
                 ******************************************998..............**************************************** PP

                 TBE-EEEEESSSE.EEE-S-TTS-TT--HHHHHTS-BSSSTT.SS-BTTSB--BEEEEEEEEEEEHH CS
  Thiolase_N 196 eivPvkvkgkkgk.ktvdkdeairsevtaekLaklkpaFkke.GtvtAgnasqisDGaaavllmses 260
                 ei+P   ++ +g  k +++de ir+e+t+e+L++lkpaF+   GtvtAg++s +sDGaaa+llmses
  CTQ29887.1 188 EIIPTGGHDADGVlKSFNYDEVIRPETTVETLSTLKPAFDPVtGTVTAGTSSALSDGAAAMLLMSES 254
                 *****************************************************************96 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3      0.69   3.1e+03      66     106 ..     109     149 ..      92     161 .. 0.59
   2 !  172.3   0.2   6.2e-55   2.8e-51       1     123 []     261     386 ..     261     386 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.69
                 GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHCTTSEEE CS
  Thiolase_C  66 lekvNvnGGaialGHPlGasGaRivvtllselkkeggklgv 106
                    v + GG   +GH     G+     l +++ k  g +g+
  CTQ29887.1 109 DASVCLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGL 149
                 45677778888888854455666555555555555555555 PP

  == domain 2  score: 172.3 bits;  conditional E-value: 6.2e-55
                 ---SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--G...GGBSTT--HHHH-B-TTTHHHHHHHHHHHH CS
  Thiolase_C   1 lkplakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldl...ekvNvnGGaialGHPlGasGaRivvtllse 96 
                 lkp a++rs+a+vg+dp+i+g+gP++a+k +lkkagl+++did+fE+nEAFaaq+L ++k+l+l +   ek+N+nGGaialGHPlG+sGaRi +tl+++
  CTQ29887.1 261 LKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSTSDIDVFEMNEAFAAQILPCIKDLGLMEqidEKINLNGGAIALGHPLGCSGARISTTLINQ 359
                 5899**********************************************************99888889***************************** PP

                 HHHCTTSEEEEEEEETTTEEEEEEEEE CS
  Thiolase_C  97 lkkeggklgvaalCigggqgvalviek 123
                 ++++++++g+a++Cig gqg+a+v+e+
  CTQ29887.1 360 MERKDAQFGLATMCIGLGQGIATVFER 386
                 ************************985 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.5   5.6e-09   2.5e-05     167     208 ..      83     124 ..      81     144 .. 0.84
   2 ?   -2.0   0.1      0.49   2.2e+03     238     252 ..     241     255 ..     228     256 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 5.6e-09
                    SEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SH CS
  ketoacyl-synt 167 psvtvdtACsSslvavhaavqslrsgeadvalaGGvellltp 208
                    p+ tv   C Ss  a+h a +++++g+a+v+l+GGve + + 
     CTQ29887.1  83 PANTVNRLCGSSMQALHDATRMIMTGDASVCLVGGVEHMGHV 124
                    56677778*****************************98875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.49
                    BB-EEEEEEEEECHH CS
  ketoacyl-synt 238 lGEGvGavvLkrled 252
                    l++G++a++L++++ 
     CTQ29887.1 241 LSDGAAAMLLMSESR 255
                    678888888877765 PP

>> ACP_syn_III  3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   9.2e-05      0.41       3      37 ..      87     121 ..      86     151 .. 0.90
   2 !    5.8   0.0    0.0028        13      47      64 ..     236     253 ..     217     265 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.2e-05
                  EE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEG CS
  ACP_syn_III   3 lnaaCsgfvyalsvAdaliesgaakrvLvigaetl 37 
                  +n  C + ++al+ A+++i +g a+  Lv g e +
   CTQ29887.1  87 VNRLCGSSMQALHDATRMIMTGDASVCLVGGVEHM 121
                  5778*************************999976 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0028
                  HHHTTB-EEEEEEEEEEE CS
  ACP_syn_III  47 stavlfGDGAgAvvleas 64 
                   t+  ++DGA+A++l  +
   CTQ29887.1 236 GTSSALSDGAAAMLLMSE 253
                  567789********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3089.48
//
Query:       CTQ29888.1  [L=729]
Description: fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-61  205.5   0.3    1.8e-60  203.9   0.2    1.9  2  3HCDH_N   3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
    5.5e-39  134.0   0.0    1.4e-38  132.7   0.0    1.6  1  ECH_1     Enoyl-CoA hydratase/isomerase
    1.1e-34  119.0   0.8    3.2e-25   88.6   0.1    3.2  3  3HCDH     3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
    6.5e-22   78.5   0.0    1.1e-21   77.7   0.0    1.4  1  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.47   2.1e+03     130     152 ..     241     263 ..     226     278 .. 0.77
   2 !  203.9   0.2   3.9e-64   1.8e-60       2     180 .]     316     494 ..     315     494 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.47
                 GGEEEEEE-SSTTT--EEEEEE- CS
     3HCDH_N 130 erviglHFfnPpplmkLvEvvrg 152
                 ++ +g H+  P++ +k++E  + 
  CTQ29888.1 241 AQTAGKHYPAPITAVKTIEAAAR 263
                 46789999999999999997655 PP

  == domain 2  score: 203.9 bits;  conditional E-value: 3.9e-64
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHHC-SEEEE-S-SSHHHHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeavdadlviEavvEnlelKrkvfael 100
                  av+GaG+mG gia++ a +g++Vv+ dis+++l+ ++ +++k l+k+ e+gk++  + + ++++i++t +++ + ++d+v+EavvEn ++K++v+ae 
  CTQ29888.1 316 AAVLGAGIMGGGIAYQSAWKGVPVVMKDISDKSLTLGMTEAAKLLNKQLERGKIDGLKLAGVISTIQPTLEYSGFDRVDVVVEAVVENPKVKKAVLAET 414
                 69************************************************************************************************* PP

                 HCCS-TTSEEEE--SSS-HHHHCCCSSSGGGEEEEEE-SSTTT--EEEEEE-TT--HHHHHHHHHHHHHTT-EEEEECS- CS
     3HCDH_N 101 ekiakpdailasnTSslsiselaealkrperviglHFfnPpplmkLvEvvrgekTseetvatvvelakkigktpvvvkdv 180
                 e+ ++pd++lasnTS+++isela++l+rpe+++g+HFfnP++ m+LvEv+rgekTs++t+a+vv++a k+gktp+vv+d+
  CTQ29888.1 415 EAKVRPDTVLASNTSTIPISELASVLQRPENFCGMHFFNPVHRMPLVEVIRGEKTSDNTIAKVVAWASKMGKTPIVVNDC 494
                 ******************************************************************************96 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   0.0   3.1e-42   1.4e-38       3     192 ..      14     206 ..      13     218 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.7 bits;  conditional E-value: 3.1e-42
                 ETTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHC..HHHHHHHCCHHH.HHHHHHHSSSEEEEEE-SE CS
       ECH_1   3 eagvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeek..akqallkeevle.lwtklytvpkpviaavnGa 98 
                 e+g+a++ ++ P  vN l+ ++++ l +al  le++  +++  L +   aF  Gad++e +      ++q + + ++ +  +++l ++p+p+i+avnG+
  CTQ29888.1  14 EDGIAELVFDAPGSVNKLDTATVASLGHALDVLEKQSDLKGLLLRSEKAAFIVGADITEFLSLFLvpEEQLSQWLHFANsVFNRLEDLPVPTISAVNGY 112
                 579**********************************************************9877768888888887652789**************** PP

                 EETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHHHHHHHHHHHHH CS
       ECH_1  99 aigGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpeeqlleealelaeklae 192
                 a+gGG+e +la+D++ a  + ++gl+e+klG++pg+gg+ +l+r +G   A ei+  gk ++a+ alk+Glvd vv++e+l + al+++++ ++
  CTQ29888.1 113 ALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIAAGKDVGADQALKIGLVDGVVAAEKLRDGALAILRQAMN 206
                 ****************************************************************************************999885 PP

>> 3HCDH  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0         4   1.8e+04      12      30 ..     353     370 ..     350     378 .. 0.75
   2 !   88.6   0.1   7.2e-29   3.2e-25       1      97 []     496     592 ..     496     592 .. 0.97
   3 !   27.3   0.0   9.4e-10   4.2e-06       3      62 ..     627     690 ..     627     711 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 4
                 HHHHHHHHHTTSS-HHHHH CS
       3HCDH  12 lneavrlveegvaspediD 30 
                 ++ea +l++++ ++  +iD
  CTQ29888.1 353 MTEAAKLLNKQ-LERGKID 370
                 56788888877.7777776 PP

  == domain 2  score: 88.6 bits;  conditional E-value: 7.2e-29
                 TTTHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHTTTH...GGHH-HHHHHHHHTT--BGGGTBSSSB CS
       3HCDH   1 GFvvnRvlapllneavrlveegvaspediDaamrlglGlpmGpfelldlvgldvakkilevlaeelger...ayapsplleklveagrlgrktgkgfyk 96 
                 GF+vnRvl+p++  + +l+ +g a+++++D++m++++G+pmGp  lld+vg+d+a+++  v+a+++++r   +y+  + ++ l++a+r+g+k+g gf++
  CTQ29888.1 496 GFFVNRVLFPYFAGFSQLLRDG-ADFRKVDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRmqkDYR--DAIDALFDANRFGQKNGLGFWR 591
                 9*********************.**********************************************955555..9*******************99 PP

                 C CS
       3HCDH  97 y 97 
                 y
  CTQ29888.1 592 Y 592
                 8 PP

  == domain 3  score: 27.3 bits;  conditional E-value: 9.4e-10
                 THHHHHHHHHHHHHHHHHTTS.S-HHHHHHHHHHHHHHS...SCHHHHHHHHHHHHHHHHHHHH CS
       3HCDH   3 vvnRvlapllneavrlveegv.aspediDaamrlglGlp...mGpfelldlvgldvakkilevl 62 
                 +  R+++p++ne+vr++eeg+ asp++ D a+ +glG+p    G+f++ld++g    +++++ +
  CTQ29888.1 627 IIARMMIPMVNEVVRCLEEGIiASPAEADMALVYGLGFPpfhGGAFRWLDTIGSAKYLDMAQQY 690
                 568*****************6489***************8877**********88777777654 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   2.5e-25   1.1e-21       4     185 ..      20     201 ..      17     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 2.5e-25
                 EEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-THHHHHHHHHHHHHHHHHC-SS-EEEEE-BEEETHH CS
       ECH_2   4 itLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkkeeeeffreeYklnyliatypkpvvalmdGivmGgG 102
                 + ++ p ++N L+++ v +l +al+  ek+++ k ++l++++  af  G D+ ++ +     +++ ++  +   ++ ++++++p p+++ ++G+++GgG
  CTQ29888.1  20 LVFDAPGSVNKLDTATVASLGHALDVLEKQSDLKGLLLRSEK-AAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTISAVNGYALGGG 117
                 567899**********************************55.9****************988776899999999************************ PP

                 HHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCSST.THHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHH CS
       ECH_2 103 vGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrlpg.elGlylalTGarlkgadalaaglathyvpseklealeeaLa 185
                 +   + + +r +t + ++  PEt++G++P  Ggs  L+rl g   +l +   G+ +++ +al++gl + +v +ekl + + a+ 
  CTQ29888.1 118 CECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRLLGaDSALEIIAAGKDVGADQALKIGLVDGVVAAEKLRDGALAIL 201
                 ***************************************977689999999***********************9976554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5368.95
//
Query:       CTQ29889.1  [L=443]
Description: proline dipeptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-44  150.8   0.2      5e-44  150.5   0.2    1.1  1  Peptidase_M24  Metallopeptidase family M24
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.022   14.8   0.0    1.5  1  DUF3793        Protein of unknown function (DUF3793)
      0.015   15.7   1.8      0.048   14.1   0.8    2.0  2  FCD            FCD domain


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.2   8.3e-48     5e-44       1     209 []     168     430 ..     168     430 .. 0.87

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 8.3e-48
                    HHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBC.SSSB--TTEEEEEEEEEEETTEEEEEEEE CS
  Peptidase_M24   1 elirkaariasaaleavleaikpgvterelaaeieattlkrhgarglafppivasgenaavlhytp.ndrvlkegdlvlidagaeydgyasDitrT 95 
                    +++r+a++ a + ++a++ea++ g++e ++ ++   +    h  +++ ++ iva++e+a+vlhyt+ ++r   e   +l+dagaey+gya+D trT
     CTQ29889.1 168 ACMREAQKSAVNGHRAAYEAFQSGMSEFDINQAYLTA--TGHRDTDVPYSNIVALNEHASVLHYTKlDHRAPAEMRSFLLDAGAEYNGYAADLTRT 261
                    58*********************************66..8888*********************8857777899999******************* PP

                    E.ECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHH....TTB...............CCGBSSCSEEEESSSSSEE....... CS
  Peptidase_M24  96 v.lvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevles....agl...............akffphglGHgvGlevhde....... 164
                    + + G  +++ + l++ v + q+a+i+ +k+G+++ + +   ++ +++    + l               + f+phg+GH +Gl+vhd+       
     CTQ29889.1 262 WaAHG--DNDFAHLIKDVNDEQQALISTMKAGTSYIDYHIQFHQRIAKllrkHQLvtdmseeamvendltGPFMPHGIGHPLGLQVHDVagfmqdd 355
                    *6677..778899*********************************99554423377778888889999999*****************7777777 PP

                    ......EEE.ESSSTTCSSB--TTBEEEEEEEEEEETTT........................EEEEEBEEEEEES CS
  Peptidase_M24 165 ......gps.vsresndgrkleeGmvftiEpgiyfapge........................ggvriedtvlvte 209
                           ps +++  +++r +e+ mv+tiEpgiyf+++                         gg+ried v+++e
     CTQ29889.1 356 tgthlaAPSkYPY-LRCTRIIEPRMVLTIEPGIYFIESLlapwregpfskhfnwqkidamkpfGGIRIEDNVVIHE 430
                    7666663332222.449*****************99944555566777778888999*****88**********97 PP

>> DUF3793  Protein of unknown function (DUF3793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.7e-06     0.022      96     120 ..     316     356 ..     257     362 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.7e-06
     DUF3793  96 e................FPHEiGlfLgYPleDVkgFienkg 120
                 +                 PH iG  Lg  ++DV+gF++ + 
  CTQ29889.1 316 TdmseeamvendltgpfMPHGIGHPLGLQVHDVAGFMQDDT 356
                 234445566667888855*******************8765 PP

>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.25   1.5e+03      88     110 ..     164     191 ..     150     194 .. 0.69
   2 ?   14.1   0.8     8e-06     0.048      12      72 ..     257     318 ..     255     323 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.25
         FCD  88 s.....sperleeslaeHraildAirar 110
                        +e  + ++  Hra ++A  ++
  CTQ29889.1 164 DyelacMREAQKSAVNGHRAAYEAFQSG 191
                 23344577888899999***99999887 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 8e-06
         FCD  12 eaarlaarratdadlaeleellealeeaaaegdlee.faeadraFHralaeaagnpvlaell 72 
                  ++r++a +++ +  + ++++++++++ +++      +++ + +FH+ +a++ + + l   +
  CTQ29889.1 257 DLTRTWAAHGDNDFAHLIKDVNDEQQALISTMKAGTsYIDYHIQFHQRIAKLLRKHQLVTDM 318
                 578999******99********999999994444334******************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3281.28
//
Query:       CTQ29890.1  [L=204]
Description: putative elongation factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-26   93.3   0.0    1.5e-26   92.8   0.0    1.2  1  UPF0029   Uncharacterized protein family UPF0029
    1.2e-17   63.6   0.0    2.2e-17   62.7   0.0    1.5  1  DUF1949   Domain of unknown function (DUF1949)
  ------ inclusion threshold ------
      0.021   14.8   0.0      0.035   14.1   0.0    1.3  1  EFG_C     Elongation factor G C-terminus


Domain annotation for each model (and alignments):
>> UPF0029  Uncharacterized protein family UPF0029
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.0   2.5e-30   1.5e-26       1     105 []      18     125 ..      18     125 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 2.5e-30
                 TTEEEEEEEEE-SSHHHHHHHHHHH--..TTSSEEEEEE....EE....TTEE-TTSST..SHHHHHHHHHHTTB-SEEEEEEEE--SS--HHHHH.HH CS
     UPF0029   1 kkSrFiavlaaveseeevkaileelkkenkkathniyAyrlrqkvekvnedsdddgEpa..AGkkllelLekeklenvlvvvtRwfGGikLGpgrl.ra 96 
                 kkSrFi+ la+++  + +ka++e++++++++a+h+++A+      ++++ +++ddgEpa  AGk++l  L  +++ ++++vv+R++GGi+LG+g+l +a
  CTQ29890.1  18 KKSRFITLLAHTDGVAAAKAFVESVRADHPDARHHCVAWVAGPPDDSQQLGFSDDGEPAgtAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLvKA 116
                 8**************************************777777767777************************************************ PP

                 HHHHHHHHH CS
     UPF0029  97 iseaareaL 105
                 +   +++aL
  CTQ29890.1 117 YGGGVHQAL 125
                 **9999987 PP

>> DUF1949  Domain of unknown function (DUF1949)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   3.6e-21   2.2e-17       1      55 [.     141     195 ..     141     196 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 3.6e-21
     DUF1949   1 ltvdYadlgkverlLeqfgativdteYtddVtltlavpeeeveafkaaLtdltsG 55 
                 l+++Y +l+ ve+lL+qf++ +v++eY ++V l++a+p++ev+af+a+L+d+++G
  CTQ29890.1 141 LQCEYGQLAGVEALLAQFSGNVVESEYLASVRLRVALPQAEVAAFSARLADFSRG 195
                 79****************************************************9 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.9e-06     0.035       5      68 ..     135     196 ..     134     199 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.9e-06
                 EEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS CS
       EFG_C   5 PivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGe 68 
                 P+   +++++   ++ v  +l++  G++ + e+   + v+++  +P ae+  f+ +L  +++G 
  CTQ29890.1 135 PLTAYTLQCEYGQLAGVEALLAQFSGNVVESEYL--ASVRLRVALPQAEVAAFSARLADFSRGS 196
                 78889999**************************..99***********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1662.42
//
Query:       CTQ29891.1  [L=483]
Description: potassium transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-93  314.4  16.8      4e-93  312.5  16.8    1.7  1  TrkH      Cation transport protein


Domain annotation for each model (and alignments):
>> TrkH  Cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.5  16.8   2.2e-97     4e-93       3     491 ..      37     477 ..      35     482 .. 0.95

  Alignments for each domain:
  == domain 1  score: 312.5 bits;  conditional E-value: 2.2e-97
        TrkH   3 qnifkggiitialgavllfldkeskyplalkddfqivkaaeialsvdgtlklll.esaslafldalfeavsgltttglsvivveeslprsgltlraqlq 100
                  ++++++++++a+g++l++ ++++k +l+++++f iv+ ++++l + g+l+ ++ e+++l+++da fe++sgltttg+++ v ++slp ++l++r++lq
  CTQ29891.1  37 RAFTQTFFVALAIGSMLWWPNRKQKGELKSREGFLIVVLFWTVLGSVGALPFIFsEQPNLTVTDAFFESFSGLTTTGATTLVGLDSLPHAILFYRQMLQ 135
                 689************************************************9998999***************************************** PP

        TrkH 101 qiGglgvvvlaylslptlgrgsaflylseaqkeelggkelrslselikilvvyyvgleilafvllvvliytakaysevvdstgvsplwwaffhsmSafn 199
                 + Gg+g++vla+++lp lg g+++ly++e++++++++k  ++++e++k+l+++yv+l+i+++++l         + +++      p ++a+ hs+ ++ 
  CTQ29891.1 136 WFGGMGIIVLAVAILPILGVGGMQLYRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTIACALAL---------WFAGM------PAFDAIGHSFATIA 219
                 *****************************************************************.........99***......************** PP

        TrkH 200 nlGfsltpnSlasfnknivillvaiifiilGnigFpillrviiaikkkilrdlkqikeslsflldlprrcftLllasgfvwllllelavlnvtdnilfi 298
                  +Gfs++++S ++fn+ ++i  +++if ++++ ++ +++++++ +  k+            +++d+++r+f + +++  v++  l l++          
  CTQ29891.1 220 IGGFSTHDASVGYFNS-PMINSIIAIFLLISGCNYGLHFSLLSGRSLKV------------YWRDPEFRMF-IGVQLTLVIVCTLVLWL---------- 294
                 ****************.*******************************9............569*******.77777777777777772.......... PP

        TrkH 299 lldegslvvksipkgsrvlkalFqsvstrta.GFsvvdlsnlhpaikvllvlmmyigglpgStaggIrrtnvyeefslgkyeieqekepkavskksidg 396
                     ++++ + +   +   +a+Fq+vs+ t+ GF++ +++ ++ +  vll+ +++igg++gSt gg++ ++++ +f++g +e+++  +p+av +++++ 
  CTQ29891.1 295 ----HNVYGSVL---TTLNQAFFQVVSMATTaGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGN 386
                 ....22222222...35569********9999******************************************************************* PP

        TrkH 397 khlerqllvdlwslflvlliilileglklsdvqepdfsffdiLfevvSaygtvGLSlGaknaslsaqlttisklvlialmirGrlrglpvlldra 491
                 + l +++l+++w++f+ + +++i++ l++   +    + f +++ vv+++++ G++lG   a  +a++++++k +lia+m+ Grl+++++l+++ 
  CTQ29891.1 387 RALPERILEAVWGFFSAYALVFIISMLAIIATG---VDDFSAFASVVATLNNLGPGLG-VVADNFATMNPVAKWILIANMLFGRLEVFTLLVLFT 477
                 *****************************9999...567777788*************.9999*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3427.30
//
Query:       CTQ29892.1  [L=179]
Description: protoporphyrin oxidase, flavoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-52  177.8   0.0    1.8e-52  177.4   0.0    1.1  1  Flavodoxin_5  Flavodoxin domain
    2.7e-05   24.4   0.0    4.2e-05   23.8   0.0    1.4  1  Flavodoxin_1  Flavodoxin
     0.0059   16.3   0.0     0.0085   15.8   0.0    1.2  1  Flavodoxin_3  Flavodoxin domain
  ------ inclusion threshold ------
       0.03   13.3   0.0      0.048   12.6   0.0    1.3  1  SBP_bac_5     Bacterial extracellular solute-binding proteins


Domain annotation for each model (and alignments):
>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.4   0.0     4e-56   1.8e-52       1     143 [.       6     154 ..       6     155 .. 0.96

  Alignments for each domain:
  == domain 1  score: 177.4 bits;  conditional E-value: 4e-56
  Flavodoxin_5   1 lilYsSrdGqTkkiaeriaeelreegelvdved.vekesedlesydavvigasvyygkllpelakFvekhreaLstkpvalfsvsltarkpek.... 92 
                   lil+s+rdGqT++ia+++a el+e g ++d  + ++++  ++++yd+vvigas++yg+++p+++ Fv+kh +aL++ p a+fsv+l+arkpek    
    CTQ29892.1   6 LILFSTRDGQTREIASFLASELKELGIDADTLNlNRTDVVEWHHYDRVVIGASIRYGHFHPAVDRFVKKHLAALQALPGAFFSVNLVARKPEKrtpq 102
                   8************************888888884446778********************************************************* PP

  Flavodoxin_5  93 ..syvrkflkeklrwqpklvgvfaGaldysklslfdrlmiklimkmtkgetdt 143
                     sy+rkfl +++ wqp++++vfaGal+y+++s++dr+mi+limkmt+getdt
    CTQ29892.1 103 tnSYTRKFLLNSP-WQPQSCAVFAGALRYPRYSWYDRFMIRLIMKMTGGETDT 154
                   **********997.*************************************98 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   9.4e-09   4.2e-05       1      54 [.       7      58 ..       7      88 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 9.4e-09
                  EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEE CS
  Flavodoxin_1  1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvts 54
                  il+ +  G+t+++A  la el+e g++ad ++l++ d++  e  +++ +++++s
    CTQ29892.1  7 ILFSTRDGQTREIASFLASELKELGIDADTLNLNRTDVV--EWHHYDRVVIGAS 58
                  89***********************************65..***********99 PP

>> Flavodoxin_3  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.9e-06    0.0085       1      64 [.       6      73 ..       6      80 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.9e-06
  Flavodoxin_3  1 lilysSltGNTkkvAeaikealee...ekeivsikeakek.veeadvvfvGfwvdkgtadeealkfle 64
                  lil+s++ G T+++A+ ++++l+e     + +++++ + +  +++d v++G+ ++ g++  ++ +f++
    CTQ29892.1  6 LILFSTRDGQTREIASFLASELKElgiDADTLNLNRTDVVeWHHYDRVVIGASIRYGHFHPAVDRFVK 73
                  699********************983334555555555558999*************99999988876 PP

>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.1e-05     0.048     299     370 ..       5      72 ..       2      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.1e-05
                 EEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHH CS
   SBP_bac_5 299 ltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpfl 370
                 +++l+++ +   ++ia +++++lk++Gi+++  ++      ++ v+ + +d ++ g +  y++ ++ ++ f 
  CTQ29892.1   5 TLILFSTRDGQTREIASFLASELKELGIDADTLNLNR----TDVVEWHHYDRVVIGASIRYGHFHPAVDRFV 72 
                 5677888888899**********************66....2347899999999999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1396.05
//
Query:       CTQ29893.1  [L=252]
Description: putative peptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-26   91.9   0.1    6.7e-26   91.3   0.1    1.3  1  Peptidase_M48  Peptidase family M48
     0.0078   16.6   0.3      0.016   15.7   0.3    1.5  1  LPAM_1         Prokaryotic membrane lipoprotein lipid attachm


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.1   7.4e-30   6.7e-26       6     195 ..      72     245 ..      65     246 .. 0.84

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 7.4e-30
                    HHHHHHHHHHHHTT-..-EEEEEEE-GGGT-EEEEESSS-EEEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48   6 elkevveelakeaglpkpltkvyvvnspkrNAFalgggknkrivltdgLlkqllseeelaaVlGHElGHikhrhsvvslivsllasillllglall 101
                    +l+++   l ++++   ++ ++ v++ +++NAFa+ +g    i +++gL+ +l++++e++aV+GHE+GH++ +h+ + + v+l  + +   ++++ 
     CTQ29893.1  72 RLNKIAAALGDNING--QPVNYKVYETKDVNAFAMANG---CIRVYSGLM-DLMNDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRAAAASAG 161
                    455555555566666..8999999999999********...*********.************************999***999999998888755 PP

                    TT-SHHHHHTT--S---HHHHHHHHHHTTHHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHHHHS-SS--HHHHHHHHHH- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 102 israeedaagafldalavliglliillflalSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrsellstHPplleRiqalkel 195
                    + + ++ +++  l+ l+        l+   +S ++E++AD +++ ll +++ +++ l++ +++l++ + + +    ++  HP ++ R q+++++
     CTQ29893.1 162 GIVGSLSQSQ--LGDLGE------KLVNSQFSQRQESEADDYSYDLLRKRGINPSGLATSFEKLAKLEAGRQS--SMFDDHPASEARAQHIRDR 245
                    5554444333..333333......3445599*********************************999988885..7***************975 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.3   1.7e-06     0.016       5      18 .]       7      20 ..       2      20 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.7e-06
      LPAM_1  5 llalgalllLsGCs 18
                +lalg++++L+GC+
  CTQ29893.1  7 VLALGIAATLTGCQ 20
                89***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1869.11
//
Query:       CTQ29894.1  [L=58]
Description: hypothetical protein CH1034_300002 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 458.15
//
Query:       CTQ29895.1  [L=422]
Description: putative outer membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.4e-124  415.4  14.1   2.7e-124  415.2  14.1    1.0  1  OprD      outer membrane porin, OprD family


Domain annotation for each model (and alignments):
>> OprD  outer membrane porin, OprD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  415.2  14.1  1.5e-128  2.7e-124       1     393 [.      27     420 ..      27     421 .. 0.96

  Alignments for each domain:
  == domain 1  score: 415.2 bits;  conditional E-value: 1.5e-128
                 XHTTTTEEEEEEEEEEEEEEEEECTTECCEEEEEEEEEEEEEEEE---SSSEEEEEEEEEEEEEEEEEEGCC--SSS...S-BETTSCBESEEEEEEEE CS
        OprD   1 kgFiedsklslllRnfYfnrdfrdaeakqskreewaqgfilnfeSGyTqGtvGfGvDalgllglkLdggkgrsgtgl...lpldsdgraaddysklgla 96 
                 +gFieds+l+l lRn+Y++rd+rd+      ++ew+qg+i++feSG+TqG+vGfGvD +++++++Ldgg+grsg+g    +++d+dgra++d++k+g++
  CTQ29895.1  27 QGFIEDSHLDLFLRNAYIKRDYRDG---LPDKAEWGQGIIATFESGFTQGPVGFGVDGIAQYAVRLDGGRGRSGAGGidfFAQDDDGRAKSDLAKFGAT 122
                 69**********************6...57788*****************************************6654879999*************** PP

                 EEEEETTEEEEEEEE--EETTEEE-SSSSS--EEEEEEEEEEESTTEEEEEEEEEEEE-TT-SSEEEEEBTTCSTCEEESEEEEEEEEEEESTTEEEEE CS
        OprD  97 vKlrvskteLkvGellpklPvlasndsRllPqtfqGvlltskeidgLtLeaGrltkvsqrnsssledlsltygaaskesdrlnfaGgdYkvtdrlslsl 195
                 +K+r+s+t+L +G++ p lP++ ++dsRll ++++G++lts+eidgL+++aG lt  +++++ s++           ++++l+f G++Y+++d+ls  l
  CTQ29895.1 123 AKMRFSNTVLSYGSQRPMLPIVYADDSRLLYESYTGTMLTSREIDGLEINAGYLTDQQRKSDDSHN----------SGLKSLTFGGASYQFNDQLSGAL 211
                 *******************************************************99888888877..........6899******************* PP

                 EEEEETTTEEEEEEEEEEEEEETSTEEEEEEEEEEEEEE-TT...CTTCS-EEEEEEEEEEEEETTEEEEEEEEEEESSS----BT.........TSEC CS
        OprD 196 yaaelediyrqqylglkhklplgedlsLktdlnyyktkdegk...akagkidnrtyslaltyklgahsltlgyqrvsGdtgfdyvn.........gtds 282
                 ya+++ed+ ++qylgl++k+p+++d++L +d+n y+++ + +   a+     n ++sla++y  + h+++++yq+ sG tg++y           g+++
  CTQ29895.1 212 YASHVEDVLNKQYLGLNYKQPFAADQQLIVDFNGYNSRLDQEyadANDTGRSNSIWSLAASYIWDIHTFKVAYQQSSGSTGYHYGGyqnqggvgdGGNT 310
                 *************************************988775445556789******************************************99*** PP

                 TTSTT-BSSB-S-STT-EEEEEEEEEEGGGCT-TTEEEEEEEEEEEEEEESTSTSSEEEEEEEEEEEEEE--SSTTTTEEEEEEEEEEEESS..GGSS- CS
        OprD 283 iylansvqvsdFnapgErswqlrYdldfaalgvPGLsfmtryvrGddidttkangkdgkewerdlelkYvvqsGplkdlslrlrnatlrsna..aqses 379
                 i+lans+ +sdFn+++Erswq++Y ldfa lg+PGLs++t+yvrGd+i+t+++  ++gke+e++++++Y vq+G +kdl+lrlr+++lr +   ++++ 
  CTQ29895.1 311 IWLANSY-WSDFNGEDERSWQASYGLDFAGLGLPGLSWTTAYVRGDNIKTAET--SNGKEHEWFNQVQYQVQNGMAKDLKLRLRYSVLRVSSnaSDYNV 406
                 *******.*******************************************99..**********************************9887788899 PP

                 EEEEEEEEEEEEEE CS
        OprD 380 didenRliveypls 393
                 + +e+R++veyp++
  CTQ29895.1 407 SGNEVRFYVEYPFN 420
                 99**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3313.13
//
Query:       CTQ29896.1  [L=546]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-42  145.1   2.3    2.3e-42  144.5   0.6    2.1  3  TPP_enzyme_N    Thiamine pyrophosphate enzyme, N-terminal TPP
    9.4e-32  109.9   0.4    3.4e-31  108.1   0.2    2.1  2  TPP_enzyme_C    Thiamine pyrophosphate enzyme, C-terminal TPP
    2.8e-20   72.5   0.0    5.9e-20   71.4   0.0    1.6  1  TPP_enzyme_M    Thiamine pyrophosphate enzyme, central domain
  ------ inclusion threshold ------
      0.061   12.5   0.1       0.14   11.4   0.1    1.5  1  DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5   0.6   5.1e-46   2.3e-42       2     169 ..       6     174 ..       5     176 .. 0.98
   2 ?   -3.7   0.0       1.8   8.1e+03       8      27 ..     223     242 ..     222     244 .. 0.77
   3 ?   -1.3   0.0      0.33   1.5e+03     115     159 ..     488     527 ..     414     530 .. 0.63

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 5.1e-46
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   tv++a++r+L+++ ve ++gv   ++lp+ da+ ++++ir+v ar E g + +Ad++ r++g +gv+l+++g Ga na++al+eA+ +++Pll+l+g
    CTQ29896.1   6 TVGDAIARTLEQYHVEAIYGVISIHNLPIADAVGQREKIRFVPARGEAGSVTMADAHGRFSG-LGVALTSTGAGAGNAVGALVEAMNAGTPLLHLTG 101
                   89***********************************************************8.********************************** PP

                   E--CCCHH..S..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N  99 drptslrg..qgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevd 169
                   +++ +  +  +g+++++ dql +++   k a+r++++++++ +l++Ai++a+++++gPv +e+p d+++++++
    CTQ29896.1 102 QVEKAWLDadTGFIHETRDQLTFLKASSKRAYRISNANQAVAILHKAIQEAQTPPCGPVSVEIPIDIQSAKIP 174
                   *******99999999778**************************************************99886 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.8
                   HHHHHHCT--EEEE---CCC CS
  TPP_enzyme_N   8 vraLkalgvehvfgvpGsri 27 
                   v++L+++gv+++    G +i
    CTQ29896.1 223 VKTLADAGVTVISSTHGRGI 242
                   68899999999887777665 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.33
                   -CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEE CS
  TPP_enzyme_N 115 dqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylel 159
                   d + l++ +   a+ v+++e+++ ++ +A++      pgP ++e+
    CTQ29896.1 488 DFTLLAQAMGLQAWSVDRAEDFQAVMTEALA-----MPGPSVVEV 527
                   4444455555556666666666666655553.....446666655 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.94   4.2e+03     125     148 ..     353     376 ..     334     379 .. 0.68
   2 !  108.1   0.2   7.7e-35   3.4e-31       6     153 .]     386     527 ..     382     527 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.94
                   EEESSH.HHHHHHHHHHHHCSSSE CS
  TPP_enzyme_C 125 arvekadveeleealkealekkgp 148
                   +r +  d ++l++a+++al  +g 
    CTQ29896.1 353 LRDQCGDYAKLNDAIAQALPDDGI 376
                   443445568999999999977765 PP

  == domain 2  score: 108.1 bits;  conditional E-value: 7.7e-35
                   HHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTT CS
  TPP_enzyme_C   6 tlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfggkrksg 102
                   +lw +rl++++ p   ++ ++ g++G glp+A+G ++a+p+r+vv +vGDGg+  +l elat +++++++t++++n++gyg ++g q++++g+r++ 
    CTQ29896.1 386 SLWGSRLFRAHGPLMNIH-SLAGAIGMGLPMAVGTAIANPQRKVVGLVGDGGLSLNLGELATLAQEKANVTLLIMNDGGYGVMRGIQDKYFGGRQYY 481
                   578889988887755554.69*************************************************************************998 PP

                   SBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C 103 pagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                   ++   l+ +df  la+a+G ++ +v++a  e++++++ eal+  gp+++ev
    CTQ29896.1 482 NE---LHTPDFTLLAQAMGLQAWSVDRA--EDFQAVMTEALAMPGPSVVEV 527
                   87...9999************99*****..*******************97 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0   1.3e-23   5.9e-20       2     137 .]     196     324 ..     195     324 .. 0.91

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 1.3e-23
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTT CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgsep 98 
                   +++ + lk+ak+p++ +Ggg+   +  e+++ la+  g+ v+++ +g+g++ ++h  +l    +h s+++ +++ ++D+ l+ G+r+   + t s++
    CTQ29896.1 196 DALWAQLKQAKQPLLWLGGGAL--ESGEAVKTLAD-AGVTVISSTHGRGILADSHRASLR--AFHNSPSVEALISQCDFTLVAGSRLRS-NETRSWT 286
                   678899****************..99999999998.7*******************9966..567789999999*************99.8899999 PP

                   .TTTTT-EEEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  99 .efapeakiihididpaeigknyqvdlaivgdvketleaL 137
                    e +     ++ididpa +++ny +d ++v+d+++ l aL
    CTQ29896.1 287 lELPTP--RVQIDIDPAAASRNYLMDNTLVADCRALLAAL 324
                   676655..8****************************997 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1     3e-05      0.14     112     172 ..     403     463 ..     394     480 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3e-05
  DXP_synthase_N 112 Hs.stsisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkl.lvilNdNe 172
                     Hs + +i ++l +av + +++ ++kvv ++GDg+l+    +  l +++++k+++ l+i+Nd  
      CTQ29896.1 403 HSlAGAIGMGLPMAVGTAIANPQRKVVGLVGDGGLSL--NLGELATLAQEKANVtLLIMNDGG 463
                     6534689999999**********************95..556677776666654377899965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3705.39
//
Query:       CTQ29897.1  [L=489]
Description: putative aldehyde dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-164  547.5   0.0   2.2e-164  547.3   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
    0.00044   19.4   0.0    0.00078   18.6   0.0    1.3  1  LuxC      Acyl-CoA reductase (LuxC)
  ------ inclusion threshold ------
      0.037   14.2   0.0      0.078   13.2   0.0    1.5  1  NIPSNAP   NIPSNAP


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  547.3   0.0  3.8e-168  2.2e-164       7     462 .]      18     476 ..      12     476 .. 0.98

  Alignments for each domain:
  == domain 1  score: 547.3 bits;  conditional E-value: 3.8e-168
                 SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH..HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH CS
      Aldedh   7 etievinPatgeviakvpaataedvdaavaaAkeafk..awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryyael 103
                 + +++  Pa+g + a  +aa+ +d+++a++ A +a +  +w+++ +++Ra+iL+k+adl+e++ +el++ +++++Gkplaear+ v++a+ ++ry+a++
  CTQ29897.1  18 NLMHSQFPADGAINAALHAASLDDLQEAIDCADRAWRepTWRAMLPHQRAKILHKVADLIEAQLDELTQKQSRDNGKPLAEARGLVMSAAGTARYFAAA 116
                 4477888****************************99778*********************************************************** PP

                 HHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHH CS
      Aldedh 104 aeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealv 201
                 +e lege  +  +++ l+l+r+ePlGvv+aItPWN P++  ++k+apa+aaGN+v+lKPae tpl+al la++fe+aglP+g+l+v++g+gs +g+al+
  CTQ29897.1 117 CELLEGELPTPrQADLLTLSRYEPLGVVAAITPWNSPIASEMQKVAPAIAAGNAVILKPAEATPLMALELAKIFEQAGLPAGLLSVLPGKGSIIGDALA 215
                 ******9844446999*********************************************************************************** PP

                 H-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS- CS
      Aldedh 202 ehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvgd 300
                 +hp+v+k+sftG+t++gr++a+ aa++l + +lElGGk+p+ivledaD+++a+++i  g+f++ GQ Cia+srl+v++++y +++++l+e ++ l+vg+
  CTQ29897.1 216 RHPKVRKISFTGGTTTGRHLAHVAAEKLIPASLELGGKSPTIVLEDADIEQAARGICYGIFSSGGQACIAGSRLFVHDKVYPQLMARLLELTQGLRVGH 314
                 *************************************************************************************************** PP

                 TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT.E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESE CS
      Aldedh 301 pldedtdvGPliseaqlekvekyveeakeegaklllGge.reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLa 398
                 p+   t+vGPli+ +++++v +yve ak eg  +l+Gge  +++ l+ g ++ Pt+++++++++r++qeEiFGPVl+ ++f+de+ +i+ aNd+ +GLa
  CTQ29897.1 315 PFSAGTHVGPLINDKHRQSVLEYVELAKREGGSVLCGGEiPADPALAAGSYFLPTIIEGLNNQARVCQEEIFGPVLVAMRFHDEAALIREANDSVFGLA 413
                 ****************************************99********************************************************* PP

                 EEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 399 agvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 ag++t+d  ra+r++e+leaG+v+iN+++++++++ pfgG+k+SglGre+g +gl+++++ k++
  CTQ29897.1 414 AGIWTRDTGRALRLSEQLEAGTVWINTYKVFSIST-PFGGFKESGLGREKGIQGLKAWMQQKSI 476
                 ***********************************.*************************986 PP

>> LuxC  Acyl-CoA reductase (LuxC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.3e-07   0.00078      85     264 ..     136     306 ..     124     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.3e-07
        LuxC  85 ekaqprglvlhvlsgNvpllp.vmsilqglLvknvnllkvSssdpflaaallksladvdenhtladslsvvyfksgdtkleeeiv..qnaDvvvawGge 180
                 +++ p g+v  +++ N+p+   +  ++ ++ ++n+ +lk+    p +a +l+k + +       a  lsv+  +++   + + +    ++ +++  Gg 
  CTQ29897.1 136 SRYEPLGVVAAITPWNSPIASeMQKVAPAIAAGNAVILKPAEATPLMALELAKIFEQAGLP---AGLLSVL--PGKGSIIGDALArhPKVRKISFTGGT 229
                 7899**************9761667999***************************999996...999****..88888888888843456788999*** PP

        LuxC 181 eaikaise..klkpgkqlikfGakvSfavvdkealeeealdkaaeraAkDiivfdQqAClspqvvfvekddkieidefaeaLaaaL 264
                  + + +++    k     ++ G k    v++ +     ++++aa+ +   i +   qAC++   +fv   dk+ ++ +a++L  +L
  CTQ29897.1 230 TTGRHLAHvaAEKLIPASLELGGKSPTIVLEDA-----DIEQAARGICYGIFSSGGQACIAGSRLFVH--DKVYPQLMARLL--EL 306
                 *99999985333444578999*99887777665.....5*****************************..899999999998..55 PP

>> NIPSNAP  NIPSNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.3e-05     0.078      30      84 ..      14      68 ..       8      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
                HHH--EEEEEEEEESBSSEEEEEEEES-HHHHHHHHHHHHH-HHHHHHHHHHHTT CS
     NIPSNAP 30 khggeliGyfaseiGalnqvlhlwaydslaarearraalaadpeweaavekavdl 84
                + gg+l+   +++ Ga+n +lh ++ d+l++  +  +++++ p w+a ++ +++ 
  CTQ29897.1 14 RGGGNLMHSQFPADGAINAALHAASLDDLQEAIDCADRAWREPTWRAMLPHQRAK 68
                5677777777899********************************8887776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3627.84
//
Query:       CTQ29898.1  [L=255]
Description: putative L-aspartate dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-29  102.6   0.1    1.9e-29  101.9   0.1    1.4  1  DUF108         Domain of unknown function DUF108
    1.9e-12   47.9   0.1    8.1e-12   45.8   0.0    2.0  3  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
     0.0047   17.0   0.0     0.0082   16.2   0.0    1.4  1  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.019   15.1   0.0    1.4  1  DapB_N         Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> DUF108  Domain of unknown function DUF108
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.1   4.1e-33   1.9e-29       2      89 .]     161     248 ..     160     248 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 4.1e-33
                 SS-EEEEEEEHHHHHHHSTTS-CHHHHHHHHHH.CCGEEEEEEEETT-SSEEEEEEEEETTEEEEEEEEE-EETTEEEEEHHHHHHHH CS
      DUF108   2 teptvlFeGsareaikkfPknvNvaaalaLaalgfdrvkvelvadpnldkniheieveGsfgefslevenkpspenPktsalaalsvi 89 
                 +e +++FeGsarea+++fP+n+Nvaa++aL ++g+d+++v+l++dp+ ++n+h++++eG fgef+le++  p ++nPkts+laals++
  CTQ29898.1 161 NEAKIFFEGSAREAARLFPANANVAATIALGGIGLDATRVQLMVDPATQRNTHTLHAEGLFGEFHLELSGLPLASNPKTSTLAALSAV 248
                 6889**********************************************************************************85 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   1.8e-15   8.1e-12       1     106 [.       9     107 ..       9     111 .. 0.71
   2 ?   -2.2   0.0       1.4   6.1e+03      99     117 .]     150     168 ..     148     168 .. 0.88
   3 ?   -2.9   0.0       2.4   1.1e+04      59      74 ..     199     214 ..     173     225 .. 0.66

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 1.8e-15
                    --SHHHHHHHHHHHH---SSEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHH..S-EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGG CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqseielelvavadrdsllskdrkallasealtldlddliahl..dpdvvVEcasseavaelvlkaLkagkdvvtankgal 94 
                    G+Ga ++av+e+l  q     +++  ++ r+   s++++  l+  + +++l d ++     pd+v+Ecas++ava++ +++L++g ++ + + gal
     CTQ29898.1   9 GYGAMAQAVIERLPPQ-----VRVEWIVARE---SHHAAICLQFGQAVTPLTDPLQ-CggTPDLVLECASQQAVAQYGEAVLARGWHLAVISTGAL 95 
                    6666666666666544.....3455666666...3333333333333333333333.1346*********************************** PP

                    G-HHHHHHHTSS CS
  NAD_binding_3  95 adealyeeLrea 106
                    ad++l ++Lr+a
     CTQ29898.1  96 ADSELEQRLRQA 107
                    **********97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
                    HHHHHTSSSTTS--.EE-G CS
  NAD_binding_3  99 lyeeLreaaeangakiyve 117
                    + e+L++++  n+aki++e
     CTQ29898.1 150 YAEQLIDLSAVNEAKIFFE 168
                    6789999999999999997 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.4
                    S-EEEEE-S--HHHHT CS
  NAD_binding_3  59 dpdvvVEcasseavae 74 
                    ++++ V+ a ++ ++ 
     CTQ29898.1 199 RVQLMVDPATQRNTHT 214
                    5666676666665555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.8e-06    0.0082      13      86 ..       3      71 ..       1      80 [. 0.84

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.8e-06
                  -EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE-SSSS CS
  Shikimate_DH 13 kkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvisatase 86
                  kkv+liG G ma+ v++ L   +v+   ++ R+ ++a +++ +++++   +++l++  ++    d+v+ + + +
    CTQ29898.1  3 KKVMLIGYGAMAQAVIERLP-PQVRVEWIVARESHHA-AICLQFGQA---VTPLTDPLQCGGTPDLVLECASQQ 71
                  89*****************9.5666669999998877.689999888...999999999988888888876655 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   4.3e-06     0.019       2     115 ..       4     110 ..       3     118 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.3e-06
                 EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSSHHHHHHH-SEEEE-S-HHHHHHHHHHHHHTT-EEEE--SS CS
      DapB_N   2 kvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevlekadvliDFTtpeavlenlklalekgvklViGTTG 100
                 kv+++G+ G m ++v++ +  + ++e   a ++++       a   l++g+   ++ +d  ++    d +++  + +av ++ +++l++g +l + +TG
  CTQ29898.1   4 KVMLIGY-GAMAQAVIERLPPQVRVEWIVARESHH-------AAICLQFGQAVTPL-TDPLQCGGTPDLVLECASQQAVAQYGEAVLARGWHLAVISTG 93 
                 89*****.************999999888888877.......33345554444455.577789999************************998666777 PP

                 -..-HHHHHHHHHHTTT CS
      DapB_N 101 l..seeelaeleelakk 115
                    ++e  ++l+++  k
  CTQ29898.1  94 AlaDSELEQRLRQAGGK 110
                 54555555667766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2000.33
//
Query:       CTQ29899.1  [L=264]
Description: putative short-chain dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-44  150.1   0.0    1.1e-43  149.5   0.0    1.2  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    2.3e-42  144.7   0.0    2.7e-42  144.4   0.0    1.1  1  adh_short        short chain dehydrogenase
    4.2e-08   33.3   0.0    8.5e-08   32.3   0.0    1.5  1  KR               KR domain
     0.0097   15.4   0.0      0.014   14.9   0.0    1.3  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.014   15.3   0.0      0.037   14.0   0.0    1.7  2  Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
      0.076   12.4   0.0       0.11   11.9   0.0    1.1  1  DUF1776          Fungal family of unknown function (DUF1776)


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   0.0   3.7e-47   1.1e-43       3     233 ..      16     260 ..      12     261 .. 0.90

  Alignments for each domain:
  == domain 1  score: 149.5 bits;  conditional E-value: 3.7e-47
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.v..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                    sgIG+++ ++l  eGa+v+++ +n ++ +++ ++l++e+++  v   +cDV +e++vea++++v+++fg++D+l+nnag      ++f++t+re +
    CTQ29899.1  16 SSGIGFETLRLLLGEGAKVAFCGRNPDRlASAHAALQNEYPEGeVfsWRCDVLNEAEVEAFAAAVAARFGGVDMLINNAGQGYV--AHFADTPREAW 110
                   59**************************99**********9666669************************************9..*********** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTTHHHHH CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikgfdell 189
                    +  + +l ++++ +ka++ l++++  +si ++ s+ a +  ++  a +aa+aal ++t +l +el +kgiRvN++  g+++    ++++++ ++  
    CTQ29899.1 111 LHEAELKLFGVINPVKAFQSLLEASdiASITCVNSLLALQPEEHMIATSAARAALLNMTLTLSKELVDKGIRVNSILLGMVESGQwQRRFESRSDKS 207
                   ********************9998889********************************************************99444444433333 PP

                   HHH.........HHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 190 eel.........earaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   + +         ++ +p+ rlg+p+e a+a lfLas++as++tG+ l v gG+
    CTQ29899.1 208 QSWqqwtadiarKRGIPMARLGKPQEPAQALLFLASPLASFTTGAALDVSGGF 260
                   3330001111224568************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.4   0.0   9.2e-46   2.7e-42       2     191 ..       9     200 ..       8     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 144.4 bits;  conditional E-value: 9.2e-46
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee..gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselse 98 
                 v++vtG+ssGIG ++ + l+ eGakv++++r++++l+ +++ l++e  + +++ +++Dv +++evea+ +++++++g++d+L+nNAG   ++ f+++  
  CTQ29899.1   9 VAVVTGGSSGIGFETLRLLLGEGAKVAFCGRNPDRLASAHAALQNEypEGEVFSWRCDVLNEAEVEAFAAAVAARFGGVDMLINNAGQGYVAHFADTPR 107
                 89**********************************************9************************************************** PP

                 HHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHC CS
   adh_short  99 eewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelr 191
                 e+w    e+ l+gv++ ++a+   + ++  ++I  v S  +++p ++++a sA+ aa+  +t +l+kel ++girvn++  G+v+++  +++ 
  CTQ29899.1 108 EAWLHEAELKLFGVINPVKAFQSLLEASDIASITCVNSLLALQPEEHMIATSAARAALLNMTLTLSKELVDKGIRVNSILLGMVESGQWQRRF 200
                 *************************************************************************************98877665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.8e-11   8.5e-08       4     149 ..      11     158 ..       9     193 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2.8e-11
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--H CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemta 102
                 ++tGG  g+G e+ r l+ +ga+ +++++R++  + +s++   + e  + ev   ++Dv ++++vea  +++ a+++ +   i+ Ag    + ++++  
  CTQ29899.1  11 VVTGGSSGIGFETLRLLLGEGAK-VAFCGRNPD-RLASAHAALQNEYPEGEVFSWRCDVLNEAEVEAFAAAVAARFGGVDMLINNAGQGYVAHFADTPR 107
                 89*******************95.9******43.33333333333444889************************************************ PP

                 HHHHHHHTTTTHHHHHHHHHTTT....S--SEEEEEEEHHHHH--TT-HHH CS
          KR 103 edleqvlapKvkGawnLhelled....esldffvlfSSiagllgsagqanY 149
                 e++ +  + K+ G+ n  +++++    +++  ++++ S+ +l  + +  + 
  CTQ29899.1 108 EAWLHEAELKLFGVINPVKAFQSlleaSDIASITCVNSLLALQPEEHMIAT 158
                 **********99999987777765544555566666666665555555554 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.7e-06     0.014       2      93 ..      11     115 ..      10     135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.7e-06
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHHH.....T-SEEEE--S---HHHHHHSHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfkee.....qpdavihlAavggvaassedpadf 87 
                 +VtG++  iG  +++ ll +g +v    r++++ ++a+ +             ++d+++++++e++ + +     ++d+ i+ A++g va+ +++p + 
  CTQ29899.1  11 VVTGGSSGIGFETLRLLLGEGAKVAFCGRNPDRLASAHAALQneypegevFSWRCDVLNEAEVEAFAAAVaarfgGVDMLINNAGQGYVAHFADTPREA 109
                 8********************9999988886655555444337799**998889*******98887665411125689************999999998 PP

                 HHHHTH CS
   Epimerase  88 ieknlq 93 
                 + + ++
  CTQ29899.1 110 WLHEAE 115
                 876655 PP

>> Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.3e-05     0.037      42     100 ..      29      90 ..      17     111 .. 0.84
   2 ?   -2.6   0.0       1.5   4.6e+03     123     137 ..     244     259 ..     228     262 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
  Glyco_tran_WecB  42 eeglrvfllGgkpevlekaaerlrekypglriagthdgy.keeeeeaiieainas..kpdll 100
                       eg +v++ G +p+ l++a ++l+++yp+ ++  +++   +e+e ea+++a++a   + d+l
       CTQ29899.1  29 GEGAKVAFCGRNPDRLASAHAALQNEYPEGEVFSWRCDVlNEAEVEAFAAAVAARfgGVDML 90 
                      46789*********************************888999999999998765555555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
  Glyco_tran_WecB 123 k.viigvGaafdflag 137
                      +   ++ Gaa+d+  g
       CTQ29899.1 244 PlASFTTGAALDVSGG 259
                      5457899999999776 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.6e-05      0.11     109     225 ..     103     212 ..      97     220 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.6e-05
     DUF1776 109 etiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvs.salsalfevLkrelrphnidvtqikLGnldlangs 206
                 +  p ++w  e + +l+  i  ++a+ +ll++     +  i +  s++ +l++ +h + +  +  al  ++ +L++el +++i v  i LG+++ +  +
  CTQ29899.1 103 ADTPREAWLHEAELKLFGVINPVKAFQSLLEA---SDIASITCVNSLL-ALQPEEHMIATSAArAALLNMTLTLSKELVDKGIRVNSILLGMVESG--Q 195
                 5667889999999999999999*********8...6777788888887.58888887766554157999************************996..4 PP

     DUF1776 207 qsnskiasvagsevlsWse 225
                  ++   ++  +s+  sW++
  CTQ29899.1 196 WQRRFESRSDKSQ--SWQQ 212
                 4444445555555..5543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1936.28
//
Query:       CTQ29900.1  [L=257]
Description: putative hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-18   66.9   0.6    1.3e-17   64.3   0.6    1.9  1  Abhydrolase_1  alpha/beta hydrolase fold
    6.8e-17   62.8  11.5    8.3e-17   62.5  11.5    1.0  1  Abhydrolase_6  Alpha/beta hydrolase family
    3.6e-11   42.8   1.2    9.5e-11   41.4   1.2    1.8  1  Hydrolase_4    Serine aminopeptidase, S33
    2.2e-05   23.3   0.0      3e-05   22.9   0.0    1.1  1  Ndr            Ndr family
    0.00012   22.0   0.0     0.0035   17.2   0.0    2.2  2  Ser_hydrolase  Serine hydrolase
     0.0002   21.6   0.7    0.00023   21.3   0.7    1.2  1  Thioesterase   Thioesterase domain
  ------ inclusion threshold ------
      0.034   13.8   0.1      0.045   13.4   0.1    1.3  1  Esterase       Putative esterase
      0.053   13.0   0.1      0.053   13.0   0.1    1.5  2  Acyl_transf_1  Acyl transferase domain
      0.056   13.2   0.0       0.14   11.9   0.0    1.6  1  Abhydrolase_5  Alpha/beta hydrolase family
      0.095   12.6   0.0       0.17   11.7   0.0    1.4  1  Lipase_3       Lipase (class 3)


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.6   7.2e-21   1.3e-17       2     124 ..      13     124 ..      12     237 .. 0.79

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 7.2e-21
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                    +l +lhG+  ++ +w++   + aL+  g++v++ D++G+g+S+   a++       ++ad l r ld+ g+++ +lvGhS+G ++a+a+aa+yp+r
     CTQ29900.1  13 PLTLLHGISSGAASWHK--QM-ALP--GYRVLAWDMPGYGESPMLAATP---ADAGDYADALARMLDRAGVEQTILVGHSLGALVAAAFAAKYPQR 100
                    6789*************..44.666..****************999975...46778*************************************** PP

                    EEEEEEESECSSCCHHHHHHHHHHHHH CS
  Abhydrolase_1  98 Vkalvllgaidpaaslieaqrqqaksf 124
                    V  lvl +    a  +++a+  q++++
     CTQ29900.1 101 VLYLVLADV---AQGYGQAEAAQREKV 124
                    ******998...666666666665554 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5  11.5   4.6e-20   8.3e-17       3     215 ..      16     237 ..      14     242 .. 0.62

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 4.6e-20
                    EE--GC.....GC.HHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHHCHHHHHHHCCTT....TTSEEEEEETCHHHHHHH.HHHCC..EE.EEE CS
  Abhydrolase_6   3 llHGagssassWl.vapLaallaagvhvlapDlpGhGrsdpppldledladlaalldelaa..gggpvvlvGHSlGGalala.aaplalvvg.vll 93 
                    llHG +s+a sW+ ++ L      g++vla D pG+G+s+  + + +d+ d+a++l++  +  g  + +lvGHSlG+++a+a aa+++++v  ++l
     CTQ29900.1  16 LLHGISSGAASWHkQMAL-----PGYRVLAWDMPGYGESPMLAATPADAGDYADALARMLDraGVEQTILVGHSLGALVAAAfAAKYPQRVLyLVL 106
                    89**********755566.....44788*********8877777777766666655555534456666**********999978888866665333 PP

                    S-..----TTTS----TTHHHHHH......TT-CCCCHCCHS-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGC.......... CS
  Abhydrolase_6  94 dppptalpagllaaalelllalla......llrllawlsreplprlfladedadaawrarlarlaallaglgllpaaawadlpvpl.......... 173
                    +     +  g+++a +++ +++++      +l   a+ ++  ++  +l++ + +a++++  a++++l+   +l  aaaw+ + + +          
     CTQ29900.1 107 AD----VAQGYGQAEAAQREKVWQgrqqqiALGGEAMAQG--RAAKLLRPGAREADVATVAAGMRRLRRDGYL--AAAWMLAHEDIhrwladyrgr 194
                    33....2333344444444444442111213333344443..2224444333347777777777766664442..224444444444333333665 PP

                    EEEC..TT-CHHHHCHHCCCH.STTEEETCE...SSS-HHHHSHH CS
  Abhydrolase_6 174 lvlg..geDplvprllerlla.qagarlpvvlpgaGHlphleepd 215
                    l ++  ++D++ ++ l +  a + ga + + +p+aGH+ +l +++
     CTQ29900.1 195 LSVWcgEQDAITQPELVQGVAlRYGAPY-IAIPQAGHASYL-DNE 237
                    545336****999999989998899999.********9998.664 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   1.2   5.3e-14   9.5e-11      23     107 ..      27     107 ..      14     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 5.3e-14
  Hydrolase_4  23 laeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvaglils 107
                    +++a  G+ v+a+D  G+G+s+   +  ++  dy d la +++++      ++ +l+GhS+G+l+a++++++yp++v  l+l+
   CTQ29900.1  27 WHKQMALPGYRVLAWDMPGYGESPMLAATPADAGDYADALARMLDRAG----VEQTILVGHSLGALVAAAFAAKYPQRVLYLVLA 107
                  55899***********************99999999999999998877....55689********************99999987 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.7e-08     3e-05      84     134 ..      61     111 ..      38     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.7e-08
                 HHHTTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES--- CS
         Ndr  84 dladqllavldhfklksviglGvgaGAyilarfalkhperveglvLinits 134
                 d ad l  +ld   +++ i +G   GA + a fa+k+p+rv+ lvL ++  
  CTQ29900.1  61 DYADALARMLDRAGVEQTILVGHSLGALVAAAFAAKYPQRVLYLVLADVAQ 111
                 6799******************************************98754 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.9e-06    0.0035      38      92 ..      58     112 ..      46     136 .. 0.74
   2 ?    2.5   0.0     0.065   1.2e+02     122     153 ..     200     231 ..     182     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.9e-06
                    -HHHHHHHHHHHHHC-S.TTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SG CS
  Ser_hydrolase  38 dledWvaaleaaveaae.ekvvlvAHSlgclavlhaaelqlakkvagalLVapadv 92 
                    d  d ++al++ +++a  e+++lv HSlg+l+++++a ++ +++v   +L  +a+ 
     CTQ29900.1  58 DAGDYADALARMLDRAGvEQTILVGHSLGALVAAAFA-AKYPQRVLYLVLADVAQG 112
                    566888999999987752679****************.899999988888666655 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.065
                    ETTBTTC-HHHHHHHHHHCT-EEEEETT-TTS CS
  Ser_hydrolase 122 SenDpyvsfeeaeelaeawgaelvdlgeaGHi 153
                     e D + + e  + +a ++ga+ + +++aGH 
     CTQ29900.1 200 GEQDAITQPELVQGVALRYGAPYIAIPQAGHA 231
                    5789999999999******************5 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.7   1.3e-07   0.00023       2      90 ..      13     100 ..      12     170 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.3e-07
                   EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST...SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHC CS
  Thioesterase   2 pLflfppagGsasvfrslasklsdpvvevlavqlpgre...rdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesq 90 
                   pL l++++  +a++ ++ +++l+++  +vla   pg++      +++ ++++ a+ +a +l +   e  + l+GhSlG+l+A ++A+++ ++
    CTQ29900.1  13 PLTLLHGISSGAASWHK-QMALPGY--RVLAWDMPGYGespMLAATPADAGDYADALARMLDRAGVE-QTILVGHSLGALVAAAFAAKYPQR 100
                   67788888888888777.7888886..99********864444566677777888888777777777.99*****************99876 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   2.5e-05     0.045     116     140 ..      76     101 ..      61     157 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.5e-05
                 C.EEEEEETHHHHHHHHHHHCSTTTC CS
    Esterase 116 g.ravaGqSmGGlgALilalkhpdrF 140
                   + ++G+S+G+l+A   a+k+p+r 
  CTQ29900.1  76 EqTILVGHSLGALVAAAFAAKYPQRV 101
                 2589*******************986 PP

>> Acyl_transf_1  Acyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     3e-05     0.053      72     102 ..      65      95 ..      63     101 .. 0.85
   2 ?   -2.7   0.1       1.7   3.1e+03     105     136 ..     114     145 ..     104     172 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3e-05
                    HHHHHHHHTT-TTSEEEE-TTHHHHHHHHCC CS
  Acyl_transf_1  72 alaellkskGvrpaavvGHSlGElAaavvag 102
                    ala  l  +Gv++ ++vGHSlG l aa+ a+
     CTQ29900.1  65 ALARMLDRAGVEQTILVGHSLGALVAAAFAA 95 
                    77888999**************987776554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.7
                    SHHHHHHHHHHHHHHHHHHTS-EECCEECS.H CS
  Acyl_transf_1 105 sseeallavvlrsrlmmqlagpgdmaavelae 136
                     ++ea+    ++++  +q+a+ g++ a + a+
     CTQ29900.1 114 GQAEAAQREKVWQGRQQQIALGGEAMAQGRAA 145
                    56677777777777777777666666555533 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.1e-05      0.14      50      78 ..      69      97 ..      21     110 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.1e-05
  Abhydrolase_5 50 ikeapklekfvvgGhslGGvvasrfaaee 78
                   + +  ++e+ ++ GhslG  va+ faa+ 
     CTQ29900.1 69 MLDRAGVEQTILVGHSLGALVAAAFAAKY 97
                   335677999*****************976 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.5e-05      0.17      52      86 ..      63      97 ..      49     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.5e-05
                HHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHH CS
    Lipase_3 52 lkelkrllekypeysivvtGHSLGgalAlLaaldl 86
                 + l r+l++    + +++GHSLG+ +A+ +a+ +
  CTQ29900.1 63 ADALARMLDRAGVEQTILVGHSLGALVAAAFAAKY 97
                567788888888888999*********99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1783.83
//
Query:       CTQ29901.1  [L=176]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-11   42.3   0.0    7.5e-11   41.6   0.0    1.3  1  Cupin_2   Cupin domain
    1.7e-06   27.7   0.0    2.5e-06   27.2   0.0    1.3  1  Cupin_1   Cupin
    6.6e-06   25.9   0.0    8.8e-06   25.5   0.0    1.2  1  FdtA      WxcM-like, C-terminal
      0.001   19.3   0.1     0.0011   19.2   0.1    1.3  1  ARD       ARD/ARD' family
  ------ inclusion threshold ------
      0.051   13.2   0.0      0.066   12.9   0.0    1.3  1  Auxin_BP  Auxin binding protein
      0.052   13.2   0.0      0.086   12.5   0.0    1.4  1  Cupin_3   Protein of unknown function (DUF861)
      0.072   12.7   0.0       0.11   12.1   0.0    1.2  1  3-HAO     3-hydroxyanthranilic acid dioxygenase


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   2.9e-14   7.5e-11       5      67 ..      83     150 ..      80     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 2.9e-14
                 EETTE.EEEEECSSSEEEEEEEEESEEEEE.ECTE...EEEEETTEEEEE-TT-EEEEEE-SSS-EEE CS
     Cupin_2   5 lppGe.sapshrHpgedeffyVleGegelt.vdge...eveleaGdsvyfpagtpHrfrNtgdeparl 67 
                 + p   ++p h H++ +e+f+ l+G+++l   dg    e++l++ d++ +p+g   ++ N+g+e+a +
  CTQ29901.1  83 VLPSKcEGPLHLHDDVEEVFFMLKGQITLMiQDGDnytETVLRERDLISVPPGIYRGLFNHGEEEALM 150
                 445555************************7777799***************************7655 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   9.6e-10   2.5e-06      47     120 ..      91     161 ..      56     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 9.6e-10
                 EEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEE.EETTEEEEE-TT-EEEEEEESSSSEEEEEEEESSSTT- CS
     Cupin_1  47 lPhyhpnateiayvlqGegrvgfvvpgngnrdfhkk.lreGdvfvvPaglvhfqynsgdepavaivvfdtnnpgn 120
                 ++h h   +e++++l+G+ ++++   +    +++ + lre d++ vP+g+    +n g+e+a++ v ++t++p+ 
  CTQ29901.1  91 PLHLHDDVEEVFFMLKGQITLMIQDGD----NYTETvLRERDLISVPPGIYRGLFNHGEEEALMCVMLGTHKPHI 161
                 89******************5544444....455555***********************************975 PP

>> FdtA  WxcM-like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   3.4e-09   8.8e-06      34     109 ..      78     152 ..      59     160 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 3.4e-09
                 EEEEES--TTTEEEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE-STTEEEEE-TT-EEEEE---TT-EEEEE CS
        FdtA  34 vyyvydvpegeerGeHahkkleqllialsGsvevllddgkkkkeilldspskglyipkmiWrelinfsedavllvl 109
                  +  +  p++ e   H+h ++e+++  l+G+++++++dg +++e +l +    + +p++i+r l+n  e+  l+++
  CTQ29901.1  78 TFSTMVLPSKCEGPLHLHDDVEEVFFMLKGQITLMIQDGDNYTETVLRER-DLISVPPGIYRGLFNHGEEEALMCV 152
                 577777888887778********************************775.5799***********9998555543 PP

>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   4.1e-07    0.0011      88     144 ..      93     150 ..       9     160 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4.1e-07
         ARD  88 hlhed.eeirliveGtgyFdvrskdeawirvlvekGDLivlPagiyh.rFtltednkvk 144
                 hlh+d ee+ ++++G+    +++  +++ +  +++ DLi++P+giy   F  +e++ + 
  CTQ29901.1  93 HLHDDvEEVFFMLKGQITLMIQDG-DNYTETVLRERDLISVPPGIYRgLFNHGEEEALM 150
                 89988689***********99975.689*****************95356666666655 PP

>> Auxin_BP  Auxin binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.6e-05     0.066      55      83 ..      88     117 ..      60     166 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.6e-05
                 -B--EEEES.S-EEEEEEE--EEEEE--SS CS
    Auxin_BP  55 srtpihrhs.ceevfvvlkgkgtlylasss 83 
                  + p+h h  +eevf +lkg+ tl++ + +
  CTQ29901.1  88 CEGPLHLHDdVEEVFFMLKGQITLMIQDGD 117
                 4789**99549*************997654 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.4e-05     0.086      16      60 ..      89     136 ..      74     151 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.4e-05
                 CEEEEECESSEEEEEEEECEEEEEETTTEE...EEEETTEEEEE-TTE CS
     Cupin_3  16 pGkfrltyeedEfcyileGevkvtpegget...velraGDlvvlpkgl 60 
                  G ++l+ + +E +++l+G++++  ++g       lr+ Dl+ +p+g 
  CTQ29901.1  89 EGPLHLHDDVEEVFFMLKGQITLMIQDGDNyteTVLRERDLISVPPGI 136
                 5778999999****************999988899**********996 PP

>> 3-HAO  3-hydroxyanthranilic acid dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.3e-05      0.11      50      89 ..      95     134 ..      74     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.3e-05
                 E-SS-EEEEEEES-EEEEEEETTCCCEEEE-TTEEEEE-T CS
       3-HAO  50 leegeeffyqkkGdmvlkvldegkardivireGeifllPa 89 
                  ++ ee+f+ +kG++ l ++d  +  + v+re ++  +P+
  CTQ29901.1  95 HDDVEEVFFMLKGQITLMIQDGDNYTETVLRERDLISVPP 134
                 3678****************************99988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 1205.39
//
Query:       CTQ29902.1  [L=418]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-44  151.2  44.6    3.5e-44  151.2  44.6    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2  44.6     2e-48   3.5e-44       2     353 .]      34     380 ..      33     380 .. 0.87
   2 ?    0.3   2.8     0.015   2.7e+02      74     106 ..     383     415 ..     380     418 .] 0.75

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 2e-48
       MFS_1   2 llaaflsalarsilgpalpl.alaedlgispse..igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGl 97 
                 l +++l++++   ++++++  + +++ gi+ ++  +g+l++++ l ++++s++l+ l+dr+ + r+l  +++++++ ++++ f++++ l++ lr+l G+
  CTQ29902.1  34 LACVLLAFFDKISIAALFSDsHFQQAMGIDFDTtrLGILMSAFLLSYGFSSVLLSGLGDRIAPLRLLTGMMVVWCILMVIMGFTHNYALMVTLRILLGI 132
                 6799999999999*****999*******9998877999***************************************88888988888*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpapl 196
                 ++g lfp++ a++++ fp++ ++ra+ l+ +g+ +Ga+lg +l+ +l+  +gW+++f+++a +++ +++++ + l+  + e + +s+k+     ++a  
  CTQ29902.1 133 AEGPLFPLAFAVVRHTFPQRLQARATMLWLLGTPVGAALGFPLSIWLLNTFGWQSTFFVMAMLTIPVLIFVRIGLRGVQLEARASSDKTS----QEARR 227
                 *******************************************************************88644444444444444444444....22223 PP

       MFS_1 197 vpawkallkdpvlw..illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglal 293
                 + a ++l+ +p++w  +++ +++l  + ++g+  +lp yl +  g+  l  ag+l+++++++++ + +++++lsdr+ r  r    +++l+ a +gla 
  CTQ29902.1 228 S-ARRELFVSPHFWmiCIFNIAFL--AYLWGINGWLPGYLIKGKGIH-LEHAGWLSSMPFIAMLLGEIIGAWLSDRVDR--RAAACFISLAGAGIGLAA 320
                 3.4779*******84222222222..26666****************.****************************887..666666666666666666 PP

       MFS_1 294 lavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                 + ++++++ +++++ + +f +g+  p ++al+++ + p+ ++ta g+fn +g+++gal+p
  CTQ29902.1 321 VMHFTTPLPVIAAMSFSTFMWGTGAPNIFALLAKATHPRVSATAGGIFNGLGNFAGALSP 380
                 66666899999999999*****************************************98 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.015
       MFS_1  74 lglllllfasslw.lllvlrvlqGlgagalfpag 106
                  g +l++f++s+   l++l v++++g+++l+p+ 
  CTQ29902.1 383 MG-ALIAFTHSMDsGLIFLAVMAAVGCALLLPLL 415
                 33.666667665558999999****999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3192.62
//
Query:       CTQ29903.1  [L=398]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-52  177.6   0.0      4e-52  177.3   0.0    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.7e-19   70.1   0.1    5.3e-19   68.6   0.1    1.9  1  Reductase_C     Reductase C-terminal
    1.1e-12   48.3   0.2    2.7e-10   40.6   0.0    2.5  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    6.3e-09   35.9   1.2    2.1e-05   24.7   0.2    2.6  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
      7e-06   25.4   0.2     0.0012   18.1   0.0    2.6  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    3.9e-05   22.5   2.0       0.37    9.5   0.2    3.7  4  HI0933_like     HI0933-like protein
    6.2e-05   22.7  10.5      0.027   14.1   0.4    3.7  4  DAO             FAD dependent oxidoreductase
    7.2e-05   22.0   0.7      0.017   14.3   0.1    2.4  2  GIDA            Glucose inhibited division protein A
     0.0002   20.7   0.4       0.26   10.5   0.1    2.3  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    0.00083   19.8   0.0       0.82   10.1   0.0    2.4  2  NAD_binding_7   Putative NAD(P)-binding
     0.0017   17.8   0.6     0.0047   16.3   0.0    1.9  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
     0.0037   17.2   0.7     0.0087   16.0   0.1    1.8  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0065   15.8   0.0      0.083   12.1   0.0    2.1  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
     0.0072   15.6   0.2       0.97    8.6   0.0    2.2  2  FAD_binding_3   FAD binding domain
  ------ inclusion threshold ------
      0.011   14.8   4.9       0.86    8.6   0.2    3.0  3  FAD_binding_2   FAD binding domain
      0.041   12.7   1.4       0.42    9.4   0.1    2.7  3  Trp_halogenase  Tryptophan halogenase
      0.051   13.1   0.0        2.6    7.6   0.0    2.4  2  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
      0.069   12.2   1.3        1.8    7.5   0.1    2.5  3  Lycopene_cycl   Lycopene cyclase protein
       0.18   12.0   0.2         14    6.0   0.0    2.6  2  TrkA_N          TrkA-N domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.3   0.0   4.2e-55     4e-52       2     287 ..       4     288 ..       3     295 .. 0.90

  Alignments for each domain:
  == domain 1  score: 177.3 bits;  conditional E-value: 4.2e-55
                  SEEEE--SHHHHHHHHHHHH..HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTC CS
                  xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq..agakvtlvelegtclnggcllskallgvaedaeias...evvkklnqgielllgeevvkidpgkkkvklekkkegd 94 
                  ++v+iGgG AG +aa+tl+    ++++ +v +e+  ++++++lska+l  ae+a  ++   ev  ++  +++++    + +id+++k++ l     ++
   CTQ29903.1   4 RIVIIGGGQAGGWAAKTLRDegFSGEICVVAEEQWDFYERPPLSKAALLEAEPALPRLfsvEV--QQALDLRWYRPLRAKSIDRQNKTLAL-----SN 94 
                  79******************87799*****8888889********999999998777786755..33334666665669************.....78 PP

                  EEEEEESEEEE---EEE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Pyr_redox_2  95 eekiaydklvlAtGssprdl.gipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaalaklgkevtlveardrll.raldkelsaal 189
                  +e++ayd l++AtG+++r++    G  ++v++l r++++a++lk+ l    r+++vGgG iG+E+Aa ++k g+ vtl e+ + l+ r++  e+s+al
   CTQ29903.1  95 GETLAYDLLLIATGGRARLPsEAWGQHPQVYTL-RHWQDAQRLKQRLASaTRLAIVGGGWIGLEIAASARKSGVAVTLYEQQPALCmRSVSMEVSQAL 191
                  99******************8888**9999888.**************999*********************************************** PP

                  HHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGC...TECCSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxx RF
  Pyr_redox_2 190 eealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDva...ggkggp 284
                   e ++ +Gv+++ g+ + e+++++  l + + dg+++  d vvv++Gv  + el+ +++gl +  ++givv+ ++r+n+p i+a+GDva   +    +
   CTQ29903.1 192 DELHRGQGVDIRRGCGALELEDDNG-LPTLHCDGQRETFDAVVVGIGVDLNLELA-RDAGLSV--DRGIVVNAQGRSNDPAIFAAGDVAqhhQYGLCI 285
                  *********************9998.88***************************.*******..99**********************543333334 PP

                  --H CS
                  xxx RF
  Pyr_redox_2 285 ela 287
                  +++
   CTQ29903.1 286 QSW 288
                  444 PP

>> Reductase_C  Reductase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.1   5.6e-22   5.3e-19       1      84 [.     315     397 ..     315     398 .] 0.94

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 5.6e-22
                  EEEEEETTEEEEEEE--TT--EEEEEEETTTTEEEEEEE.ETTEEEEEEEES-HHHHHHHHHHTTTT----HHHHH-TTS-HHH. CS
  Reductase_C   1 WfWSDqydlklQiaGlatgadevvvRgdpeerafsvfyl.rdgrlvaveavnrprdlmaarrliaagasvdpaalaDpavdLkkl 84 
                  W WSDqyd+++Qi+G++++ ++++vR++p+    + f l +dgrl+  +a+n++r +++a+r +aag+ +++  laDp ++L +l
   CTQ29903.1 315 WLWSDQYDRNIQILGIPQAGSRTIVRDEPQ--GAIYFSLnADGRLTQLVAFNNARIVKLAKRWMAAGRDLSNVPLADPTFSLMSL 397
                  ****************************99..45555565******************************************886 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.036        34       1      22 [.       4      25 ..       4      40 .. 0.80
   2 !   40.6   0.0   2.9e-13   2.7e-10       1      70 [.     145     215 ..     145     223 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.036
                EEEEECSSHHHHHHHHHHHHTT CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg 22
                ++v++GgG  g  +A++l++ g
  CTQ29903.1  4 RIVIIGGGQAGGWAAKTLRDEG 25
                79*********99999999876 PP

  == domain 2  score: 40.6 bits;  conditional E-value: 2.9e-13
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEET CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegse 70 
                 ++++vGgG+iglE A+ +++ g  Vt+ e ++ l+ r    e+s++l e ++ +g++++ +  + e+e ++
  CTQ29903.1 145 RLAIVGGGWIGLEIAASARKSGVAVTLYEQQPALCmRSVSMEVSQALDELHRGQGVDIRRGCGALELEDDN 215
                 689*************************************************************9999665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1    0.0011       1.1       1      29 [.       7      38 ..       7      40 .. 0.80
   2 !   24.7   0.2   2.2e-08   2.1e-05       1      40 [.     148     187 ..     148     205 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0011
                   EE--SHHHHHHHHHHHCCTEE...EEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfd...vlllekrd 29
                   I+G+G +G  aA +L+++gf+   +++ e ++
     CTQ29903.1  7 IIGGGQAGGWAAKTLRDEGFSgeiCVVAEEQW 38
                   9*****************99644466666665 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 2.2e-08
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev 40 
                    IvG+G  Gl +A+ ++k g+ v+l+e+++ l+ r+ s ev
     CTQ29903.1 148 IVGGGWIGLEIAASARKSGVAVTLYEQQPALCMRSVSMEV 187
                    9******************************999988776 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.016        15     192     222 ..       3      33 ..       1      42 [. 0.79
   2 !   18.1   0.0   1.2e-06    0.0012     146     216 ..      97     168 ..      73     192 .. 0.76
   3 ?   -2.2   0.0       1.9   1.8e+03       2      18 ..     228     245 ..     227     247 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.016
  K_oxygenase 192 kriaVvGsGqSaaeifedllrrqkkvelklv 222
                   ri+++G+Gq ++  ++ l ++  + e+ +v
   CTQ29903.1   3 ARIVIIGGGQAGGWAAKTLRDEGFSGEICVV 33 
                  69**********9988888887666666665 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.2e-06
  K_oxygenase 146 elearnlvlgvGtepkiPevlekle.gkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkk 216
                  +l    l++++G+++ +P+ +   + +  ++ H +++ + k++l+++ r+a+vG+G  + ei+  + ++  +
   CTQ29903.1  97 TLAYDLLLIATGGRARLPSEAWGQHpQVYTLRHWQDAQRLKQRLASATRLAIVGGGWIGLEIAASARKSGVA 168
                  444456889*********98766553567899*********9********************9988776432 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.9
  K_oxygenase   2 ilDligiGiGp.snLsLa 18 
                  ++D + +GiG+  nL La
   CTQ29903.1 228 TFDAVVVGIGVdLNLELA 245
                  7999******84577776 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.5    0.0057       5.4       2      24 ..       4      26 ..       3      36 .. 0.87
   2 ?    3.8   0.0     0.021        20     134     166 ..      82     111 ..      60     128 .. 0.78
   3 !    9.5   0.2   0.00039      0.37       3      35 ..     146     178 ..     144     184 .. 0.92
   4 ?   -0.2   0.0      0.33   3.1e+02     103     163 ..     179     237 ..     177     239 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0057
                 SEEEE--SHHHHHHHHHHHHTT- CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgk 24
                 ++++iGgG AG  aA +++++g 
   CTQ29903.1  4 RIVIIGGGQAGGWAAKTLRDEGF 26
                 68**************9988875 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.021
                  EEECETTE.EEEEE.TTEEEEESEEEE----SS CS
  HI0933_like 134 svekeedgkfrvktkseeeleadklvlAtGGlS 166
                  s+   + ++ +++++++e+l+ d l++AtGG +
   CTQ29903.1  82 SI---DRQNKTLALSNGETLAYDLLLIATGGRA 111
                  33...45557889999***************86 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00039
                  EEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVlllekakkl 35 
                  ++++GgG  Gl  A+sa+k g  V+l+e++++l
   CTQ29903.1 146 LAIVGGGWIGLEIAASARKSGVAVTLYEQQPAL 178
                  79**************************99765 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.33
                  ETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 103 pvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  +++  + ++ +al +  + +gv++r  +   ++e  ++g  ++++ ++++ + d++v+ +G
   CTQ29903.1 179 CMRSVSMEVSQALDELHRGQGVDIRRGCGALELED-DNGLPTLHC-DGQRETFDAVVVGIG 237
                  66778899999999999****************65.666699999.888889999999877 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   1.0    0.0086       8.2       1      28 [.       4      35 ..       4      43 .. 0.81
   2 ?   -2.6   0.0       3.3   3.2e+03     172     207 ..      83     114 ..      65     138 .. 0.54
   3 !   14.1   0.4   2.8e-05     0.027       2      31 ..     146     177 ..     145     185 .. 0.88
   4 !    7.3   0.0    0.0033       3.1     151     207 ..     190     244 ..     184     284 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0086
                EEEEECTSHHHHHHHHHHHHTT....EEEEES CS
         DAO  1 dvviiGGGiiGlstAyeLarrg....Vtllek 28
                ++viiGGG +G ++A  L  +g    ++++  
  CTQ29903.1  4 RIVIIGGGQAGGWAAKTLRDEGfsgeICVVAE 35
                59****************55567779777654 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.3
                 EEEEETCEEEEEEECTEEEEEEEEEEE--GGGHHHH CS
         DAO 172 leeedgkvwgverttpgendaadavVnaaGawsdll 207
                 ++++    +++   ++ge+ a+d + +a+G  ++l 
  CTQ29903.1  83 IDRQ---NKTL-ALSNGETLAYDLLLIATGGRARLP 114
                 4333...3344.222255545677777777776532 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 2.8e-05
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSS CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdi 31 
                 ++i+GGG iGl +A  + + g  Vtl+e+++ 
  CTQ29903.1 146 LAIVGGGWIGLEIAASARKSGvaVTLYEQQPA 177
                 69***************8779********965 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0033
                 HHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECTEEEEEEEEEEE--GGGHH.HH CS
         DAO 151 alaraaealGveilegtevtgleeedgkvwgve.rttpgendaadavVnaaGawsd.ll 207
                 al +  + +Gv+i++g+ + +le+ d+++ +++ +   g+++++davV+  G+  + +l
  CTQ29903.1 190 ALDELHRGQGVDIRRGCGALELED-DNGLPTLHcD---GQRETFDAVVVGIGVDLNlEL 244
                 555556789*************66.5677888442...666568******999987644 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0056       5.3       2      24 ..       5      27 ..       4      43 .. 0.85
   2 !   14.3   0.1   1.8e-05     0.017       3      35 ..     147     179 ..     145     195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0056
                EEEE-SSHHHHHHHHHHHHTT-- CS
        GIDA  2 viViGgGhAGceAAlaaarlGak 24
                +++iGgG AG  AA ++   G++
  CTQ29903.1  5 IVIIGGGQAGGWAAKTLRDEGFS 27
                89************999988876 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.8e-05
                 EEE-SSHHHHHHHHHHHHTT--EEEEES-GGGT CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLithkldti 35 
                  ++GgG+ G+e A+ a ++G+ v+L+ ++   +
  CTQ29903.1 147 AIVGGGWIGLEIAASARKSGVAVTLYEQQPALC 179
                 79************************7766555 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1    0.0015       1.4      28      48 ..       2      22 ..       1      42 [. 0.88
   2 !   10.5   0.1   0.00028      0.26      28      64 ..     143     179 ..     137     196 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0015
                 --EEEEESTSHHHHHHHHHHH CS
  AlaDh_PNT_C 28 pakvlviGgGvaGlqAiatak 48
                  a++++iGgG aG  A++t +
   CTQ29903.1  2 TARIVIIGGGQAGGWAAKTLR 22
                 59***************9976 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00028
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparl 64 
                  + +  ++GgG  Gl+ +a a++ g  Vt+++ +pa  
   CTQ29903.1 143 ATRLAIVGGGWIGLEIAASARKSGVAVTLYEQQPALC 179
                  67899**************************999864 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00087      0.82       8      46 ..       3      50 ..       1     111 [. 0.72
   2 !    7.4   0.0    0.0062       5.8       9      41 ..     145     184 ..     141     277 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00087
  NAD_binding_7  8 kkvlvvGgGevAarkvrklleag..akvtvvapevkeele.......e 46
                    +++++GgG+ +   +++l ++g   ++ vva+e  ++ e        
     CTQ29903.1  3 ARIVIIGGGQAGGWAAKTLRDEGfsGEICVVAEEQWDFYErpplskaA 50
                   689******************997779*******75444455454441 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0062
  NAD_binding_7   9 kvlvvGgGevAarkvrklleagakvtvvapev.......k 41 
                    +  +vGgG ++++ + +  ++g  vt++ ++        +
     CTQ29903.1 145 RLAIVGGGWIGLEIAASARKSGVAVTLYEQQPalcmrsvS 184
                    788************************7766433322221 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2       1.7   1.7e+03      38      57 ..       4      25 ..       2      38 .. 0.77
   2 !   16.3   0.0     5e-06    0.0047      21      70 ..     128     177 ..     117     196 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.7
                  EEEEES-SHHHHHHHHHHH..H CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlk..a 57
                  ++ iiG G+ G  +ak+l+  +
    CTQ29903.1  4 RIVIIGGGQAGGWAAKTLRdeG 25
                  689*********9999998334 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 5e-06
                   TCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  21 gewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskk 70 
                   ++w++ ++l+++  s  +++i+G G IG ++a  +++ g+ v+ y++++ 
    CTQ29903.1 128 RHWQDAQRLKQRLASATRLAIVGGGWIGLEIAASARKSGVAVTLYEQQPA 177
                   468788888888899999***************************99876 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.9   1.8e+03       2      32 ..       5      35 ..       4      42 .. 0.76
   2 !   16.0   0.1   9.2e-06    0.0087       2      40 ..     146     184 ..     145     210 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.9
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdise 32
                + +iG G+ G   a+ +  +g++  ++ ++e
  CTQ29903.1  5 IVIIGGGQAGGWAAKTLRDEGFSGEICVVAE 35
                789******9888888888888766665555 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 9.2e-06
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHH CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekale 40 
                 +a++G G +G +iaa + ++g+ V+l++ +++   ++ +
  CTQ29903.1 146 LAIVGGGWIGLEIAASARKSGVAVTLYEQQPALCMRSVS 184
                 69**************************99887655443 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.4       0.3   2.8e+02       1      21 [.       6      26 ..       6      38 .. 0.83
   2 !   12.1   0.0   8.8e-05     0.083     163     288 ..     142     257 ..      81     273 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.3
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagl 21
                 +IiG+G aG  aa +l++ g+
   CTQ29903.1  6 VIIGGGQAGGWAAKTLRDEGF 26
                 7********999999999887 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8.8e-05
  Pyr_redox_3 163 agqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkdd 260
                  + ++++++Gg+  + ++A    + g  Vt++ ++  +         s++  + + l+el + + +++     + e+++++   +++ +  ++ e+ d 
   CTQ29903.1 142 SATRLAIVGGGWIGLEIAASARKSGVAVTLYEQQPALCM------RSVSMEVSQALDELHRGQGVDIRRGCGALELEDDNGLPTLHCDG-QR-ETFDA 231
                  568899999999999999999999999999999985554......47888889999998887779999999999999876655555554.44.56678 PP

  Pyr_redox_3 261 vvlatGykpdlsflkkslfeldedgrpv 288
                  vv+ +G + +l++ ++++++   d+ +v
   CTQ29903.1 232 VVVGIGVDLNLELARDAGLSV--DRGIV 257
                  888899999999888877777..33444 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0     0.001      0.97       3      36 ..       4      39 ..       2      55 .. 0.72
   2 ?    5.0   0.1     0.013        13       3      34 ..     145     176 ..     143     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.001
                   EEEEE--SHHHHHHHHHHHHTTHH..EEEEESSSSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvr..vvlvekrstt 36
                    ++I+G+G aG  +a+ L+  G +   ++v   +++
     CTQ29903.1  4 RIVIIGGGQAGGWAAKTLRDEGFSgeICVVAEEQWD 39
                   579*******************99884444444443 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.013
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                      +IVG+G  Gl  a   ++ Gv v+l e++ 
     CTQ29903.1 145 RLAIVGGGWIGLEIAASARKSGVAVTLYEQQP 176
                    568***********************998875 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2   0.00091      0.86       2      32 ..       5      37 ..       4      38 .. 0.88
   2 ?    6.5   0.2    0.0038       3.6       3      33 ..     147     177 ..     145     192 .. 0.90
   3 ?   -0.2   0.0      0.42     4e+02     375     404 ..     255     278 ..     243     289 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00091
                   EEEE--SHHHHHHHHHHHHTTT..-EEEEESSS CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGl..kvavvekeq 32
                   +++iG+G AG  AA +++++G   +++vv  eq
     CTQ29903.1  5 IVIIGGGQAGGWAAKTLRDEGFsgEICVVAEEQ 37
                   79*******************977788887765 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0038
                    EEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvekeqe 33 
                     ++G+G  GL  A++a++ G  v++ e+ ++
     CTQ29903.1 147 AIVGGGWIGLEIAASARKSGVAVTLYEQQPA 177
                    79*************************9987 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.42
                    EEEBETTSBESTTEEESSBTEEE-STCEES CS
  FAD_binding_2 375 GvetdengrvldadgqpipGLYAaGevaag 404
                    G++++++gr       + p  +AaG va  
     CTQ29903.1 255 GIVVNAQGRS------NDPAIFAAGDVAQH 278
                    6777777777......889999**999944 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00045      0.42       1      34 [.       4      36 ..       4      41 .. 0.84
   2 ?    0.4   0.0      0.25   2.3e+02     188     217 ..      88     117 ..      80     128 .. 0.87
   3 ?   -0.9   0.2      0.57   5.4e+02       2      33 ..     146     174 ..     145     180 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00045
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlvese 34
                    +ivi+GGG aG  aA +l+  +  + e+ +v  e
      CTQ29903.1  4 RIVIIGGGQAGGWAAKTLRDEG-FSGEICVVAEE 36
                    69****************9988.55777777666 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.25
                     EEEEETTS-EEE-SEEEE-SGGG-IIIIII CS
  Trp_halogenase 188 eslrledgreveadlfiDcsGfrgllieqa 217
                     + l l++g+++ +dl + ++G r++l ++a
      CTQ29903.1  88 KTLALSNGETLAYDLLLIATGGRARLPSEA 117
                     5688999******************98887 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.57
                     EEEE--SHHHHHHHHHHHHHTTTSSEEEEEE- CS
  Trp_halogenase   2 ivivGGGtaGwlaAaalakalkgklevtlves 33 
                     + ivGGG  G   Aa  +k +   ++vtl e+
      CTQ29903.1 146 LAIVGGGWIGLEIAASARKSG---VAVTLYEQ 174
                     68*****99998888777777...78888775 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0028       2.6       6      35 ..       4      33 ..       1      49 [. 0.81
   2 ?    3.0   0.0      0.07        66       6      35 ..     145     174 ..     140     194 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0028
                -EEEES-SHHHHHHHHHHHHTT--EEEEE- CS
        IlvN  6 kiaviGyGsqGhaqalnlrdsgldvvvglr 35
                +i++iG G  G   a+ lrd g+   + + 
  CTQ29903.1  4 RIVIIGGGQAGGWAAKTLRDEGFSGEICVV 33
                79********************96555444 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.07
                 -EEEES-SHHHHHHHHHHHHTT--EEEEE- CS
        IlvN   6 kiaviGyGsqGhaqalnlrdsgldvvvglr 35 
                 ++a++G G  G   a   r sg+ v++  +
  CTQ29903.1 145 RLAIVGGGWIGLEIAASARKSGVAVTLYEQ 174
                 78*********************9987554 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.039        37       2      30 ..       5      33 ..       4      42 .. 0.84
   2 ?    7.5   0.1    0.0019       1.8       2      36 ..     146     178 ..     145     200 .. 0.87
   3 ?   -3.3   0.0       3.7   3.5e+03     123     170 ..     221     268 ..     212     281 .. 0.61

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.039
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvli 30
                   +v+iG+G Ag   A+ l ++    +++++
     CTQ29903.1  5 IVIIGGGQAGGWAAKTLRDEGFSGEICVV 33
                   79*********999999887777777777 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0019
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    ++++G+G  gl +Aa     k g++v+l e  p l
     CTQ29903.1 146 LAIVGGGWIGLEIAASA--RKSGVAVTLYEQQPAL 178
                    68*************99..9********9998877 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3.7
  Lycopene_cycl 123 vleggr.kirarlvvdargl.aslkkarrlglQtfyGvevevdnppfdld 170
                     ++g r + +a  vv++ g+  +l+ ar+ gl + +G++v+ +    d++
     CTQ29903.1 221 HCDGQReTFDA--VVVGIGVdLNLELARDAGLSVDRGIVVNAQGRSNDPA 268
                    56666634444..4444442034447777888888888887777766665 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.015        14       1      27 [.       5      33 ..       5      43 .. 0.81
   2 ?    3.4   0.0     0.091        86       2      34 ..     147     179 ..     146     191 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.015
                EEEES-SHHHHHHHHHHHHTT...EEEEEE CS
      TrkA_N  1 iiiiGlGrvGrslaeeLsegg...kdvvvi 27
                i+iiG G+ G   a++L+++g   + + v+
  CTQ29903.1  5 IVIIGGGQAGGWAAKTLRDEGfsgE-ICVV 33
                89****************9776754.5555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.091
                 EEES-SHHHHHHHHHHHHTTEEEEEEESSHHHH CS
      TrkA_N   2 iiiGlGrvGrslaeeLseggkdvvvidkdeerv 34 
                 +i+G G +G ++a   +++g  v++ +++++ +
  CTQ29903.1 147 AIVGGGWIGLEIAASARKSGVAVTLYEQQPALC 179
                 79****************664699988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2840.60
//
Query:       CTQ29904.1  [L=308]
Description: putative glyoxalase/bleomycin resistance protein/dioxygenas [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-13   51.1   0.2    1.5e-12   47.8   0.1    2.4  2  Glyoxalase    Glyoxalase/Bleomycin resistance protein/Dioxyge
     0.0022   18.2   0.1        0.8   10.0   0.1    3.1  2  Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxyge
  ------ inclusion threshold ------
      0.045   14.5   0.0       0.17   12.7   0.0    1.9  2  Glyoxalase_6  Glyoxalase-like domain
        0.1   12.7   0.1        1.4    9.0   0.0    2.6  3  Glyoxalase_3  Glyoxalase-like domain


Domain annotation for each model (and alignments):
>> Glyoxalase  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.1   4.6e+02       9      26 ..      13      29 ..       5     110 .. 0.47
   2 !   47.8   0.1   3.5e-16   1.5e-12       2     128 .]     149     262 ..     148     262 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.1
                ESHHHHHHHHHHHHHTSE CS
  Glyoxalase  9 vgdleksldFYtkvLGfk 26
                v+dl  s++F ++ +G++
  CTQ29904.1 13 VDDLNHSAKFMRD-FGLT 29
                6666666666666.5543 PP

  == domain 2  score: 47.8 bits;  conditional E-value: 3.5e-16
                 EEEEEEEESHHHHHHHHHHHHHTSEEEEEEEEEESTEEEEEEEEETT..TSEEEEEEEECCTTSCTHHCCBSCTSEEEEEEEEEHCHHHHHHHHHHHTT CS
  Glyoxalase   2 idhvallvgdleksldFYtkvLGfklvkktdnteeteglriaffhag..gghielvlneapsgaakhvkkieetvhhvafialdvedvgkaldrlkeag 98 
                 ++hv+ +v +l++  +FY++vLGf++++++         r+ f+++g  ggh++l+l + p+ ++           hvaf+++d+++v+     + ++ 
  CTQ29904.1 149 VGHVVFFVEELAAVESFYREVLGFQVSDRYI-------NRAVFLRCGvrGGHHNLFLLQLPNRKRGLN--------HVAFTVRDIHEVIGGGIAMNKNA 232
                 68**************************999.......5777777765599****************9........9********************** PP

                 GEEEEEEECHHCTEEEEEEEEETTSEEEEE CS
  Glyoxalase  99 vkvvaepgrhyfgalysfyfrDpdGillei 128
                  +   +pgrh+ ++ y+ y+  p G  +e+
  CTQ29904.1 233 WSTFIGPGRHPVSSAYFWYVNSPTGGAFEY 262
                 *************************99986 PP

>> Glyoxalase_4  Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.33   1.5e+03       4      24 ..      10      29 ..       4      72 .. 0.75
   2 !   10.0   0.1   0.00018       0.8       2      83 ..     151     222 ..     150     228 .. 0.57

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.33
                  EEE-S-HHHHHHHHHH.TT-E CS
  Glyoxalase_4  4 givVeDleaavarfsallGvg 24
                  ++ V+Dl   ++++ + +G++
    CTQ29904.1 10 EFGVDDLNHSAKFMRD-FGLT 29
                  4566677666666665.6654 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00018
                   EEEEE-S-HHHHHHHHHH.TT-EESS--E.EETTTTEEEEEEEETTEEEEEEEESSTT-THHHTS-EEEEEEEEES-HHHHH CS
  Glyoxalase_4   2 QigivVeDleaavarfsallGvgpwqryrdepqevdlafallgsgsvqieLieplegpeflaehgeglhhlaywvddldaav 83 
                   ++ + Ve+l a   ++ ++lG+++++ry ++   v l    +++g+  + L +       l +++ gl+h+a+ v+d+++++
    CTQ29904.1 151 HVVFFVEELAAVESFYREVLGFQVSDRYINR--AVFLRC-GVRGGHHNLFLLQ-------LPNRKRGLNHVAFTVRDIHEVI 222
                   5666666666666666666666666655322..222222.1222223344333.......2236889999999999999876 PP

>> Glyoxalase_6  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.9   8.5e+03      96     103 ..     100     107 ..      72     128 .. 0.62
   2 ?   12.7   0.0   3.8e-05      0.17       3      71 ..     153     220 ..     151     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.9
  Glyoxalase_6  96 laDPeGne 103
                   ++DP G  
    CTQ29904.1 100 CRDPNGMT 107
                   34444433 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.8e-05
  Glyoxalase_6   3 vldaadpaalaaFwaaalgwevereeaaledpegvgpaaedaatllfqrvpepaknrvHldlavedlda 71 
                   v+ +++ aa+  F++++lg++v+++    +    +    +++  l + + p++++   H+ ++v d+++
    CTQ29904.1 153 VFFVEELAAVESFYREVLGFQVSDRY-INRAVFLRCGVRGGHHNLFLLQLPNRKRGLNHVAFTVRDIHE 220
                   555678889999*************9.4444444444556778999999999777779******99976 PP

>> Glyoxalase_3  Glyoxalase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.35   1.6e+03      84     103 ..      12      32 ..       4      81 .. 0.63
   2 ?    9.0   0.0   0.00031       1.4       3      33 ..     151     195 ..     149     204 .. 0.82
   3 ?    0.5   0.0      0.12   5.5e+02      68      90 ..     198     220 ..     180     224 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.35
  Glyoxalase_3  84 rtddidataarlraaGvd.ea 103
                    +dd++  a+ +r+ G++ +a
    CTQ29904.1  12 GVDDLNHSAKFMRDFGLTgDA 32 
                   444444444444444444322 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00031
  Glyoxalase_3   3 HvvlavpdleeaaarfarrlGftvt..............pggehp 33 
                   Hvv++v++l++  + +++ lGf+v                gg+h+
    CTQ29904.1 151 HVVFFVEELAAVESFYREVLGFQVSdryinravflrcgvRGGHHN 195
                   ***********9999999******966666666666666666665 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.12
  Glyoxalase_3  68 gldrlakgeglhtlalrtddida 90 
                    l+  +++ gl ++a++++di +
    CTQ29904.1 198 LLQLPNRKRGLNHVAFTVRDIHE 220
                   44444566777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2248.20
//
Query:       CTQ29905.1  [L=262]
Description: putative bacterial regulatory proteins, IclR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-20   72.2   0.0    5.4e-20   71.5   0.0    1.3  1  IclR          Bacterial transcriptional regulator
    9.6e-16   57.3   0.3    1.9e-15   56.4   0.3    1.5  1  HTH_IclR      IclR helix-turn-helix domain
    3.2e-05   23.7   0.0    8.1e-05   22.4   0.0    1.6  2  TrmB          Sugar-specific transcriptional regulator TrmB
     0.0037   17.2   0.0     0.0078   16.1   0.0    1.5  1  MarR          MarR family
     0.0048   17.0   0.2          3    8.0   0.0    2.3  2  sCache_3_2    Single cache domain 3
  ------ inclusion threshold ------
      0.039   14.0   0.2        0.1   12.7   0.1    1.8  2  HTH_20        Helix-turn-helix domain
      0.069   13.6   0.0       0.14   12.6   0.0    1.5  1  HTH_27        Winged helix DNA-binding domain
      0.083   12.8   0.0       0.19   11.7   0.0    1.5  1  MarR_2        MarR family
       0.19   11.8   0.1       0.27   11.3   0.1    1.2  1  Replic_Relax  Replication-relaxation


Domain annotation for each model (and alignments):
>> IclR  Bacterial transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   2.7e-23   5.4e-20       6     127 ..     132     252 ..     128     253 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 2.7e-23
                 TTSTT-EEEGGGSHHHHHHHHTS-HHHHHHHHHHHT---SSTTS--SHHHHHHHHHHHHHHTSEEEESSSSTTEEEEEEEEE-TTSSEEEEEEEEEETT CS
        IclR   6 vsaiGtrlplyataiGKalLaaldeeeleallerlelkrlterTitdpeeLleeLakvReqGyavdreEeeegvrciAapifdasgevvaAvsvsgpta 104
                 ++++Gtrlp+++t++G++lL   ++ e e+l+ +  l   t+  + d+e+L +  ++ +++Gy + ++ + +g+++i  p+f++sg+v+a+vs+ +p+ 
  CTQ29905.1 132 QVSVGTRLPVHCTSLGRMLLTDVSRSEFEQLFPNERLPGNTPGQLYDREALWQMVQQDKARGYVIGESFYRHGISSIVYPVFNRSGRVAAVVSILVPSD 230
                 468************************************************************************************************ PP

                 TSHHHHHHHHHHHHHHHHHHHHH CS
        IclR 105 rlteeelkeellalvreaArkis 127
                  + +++ ++ l + v+ aA+kis
  CTQ29905.1 231 EIPQSDRER-LQNDVSMAADKIS 252
                 *********.************8 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.3   9.4e-19   1.9e-15       2      51 ..      14      63 ..      13      64 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 9.4e-19
                HHHHHHHHCT-CTTBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR  2 ldRalaiLdalaeapqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                l+R+l++L a++e+ ++lt++el+r  ++pk+t++R +qtL+ +G++e++
  CTQ29905.1 14 LERGLQLLLAFGEQHRDLTFAELHRLVDMPKATAYRVVQTLEYMGFLERN 63
                89**********************************************98 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   4.1e-08   8.1e-05      20      58 ..      28      66 ..      18      72 .. 0.88
   2 ?   -3.5   0.0         5     1e+04       9      28 ..     177     196 ..     176     199 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4.1e-08
                HCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 20 lgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                +  +t  e+++ ++ p++++Y+v++ Le +G+ er+ ++
  CTQ29905.1 28 HRDLTFAELHRLVDMPKATAYRVVQTLEYMGFLERNART 66
                6678999***************************98765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5
                 HCCCHCHHHHHHCCCHHCHH CS
        TrmB   9 yEakvYlaLlklgpatadei 28 
                 y+ ++ + ++++++a+ + i
  CTQ29905.1 177 YDREALWQMVQQDKARGYVI 196
                 67777888888887776665 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.9e-06    0.0078      14      53 ..      27      66 ..      21      67 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.9e-06
                HSTTEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEET CS
        MarR 14 eqgplsvseLakklgvskstvtrvldrLekkGlieRsksp 53
                ++ +l+ +eL + + + k+t+ rv+ +Le  G++eR   +
  CTQ29905.1 27 QHRDLTFAELHRLVDMPKATAYRVVQTLEYMGFLERNART 66
                8999********************************8766 PP

>> sCache_3_2  Single cache domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.003       5.9      15      68 ..      69     121 ..      60     154 .. 0.69
   2 !    8.0   0.0    0.0015         3     107     132 ..     208     233 ..     179     241 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.003
  sCache_3_2  15 lalatsvagsrivrvaltdrapesglqalvddvrritgvd.yvvitDeegrvlah 68 
                  +l+ +v +    ++a+ d    +  q+ ++++r+i++++ +  i D +++++  
  CTQ29905.1  69 FSLGMNVLRLGFEYIASLD--VAQVGQPVIEQLRDISQCSsHLAIRDGRDIIYIA 121
                 5556666666666666666..566679999*********99********987754 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0015
  sCache_3_2 107 vklPvfdadgrviGivsvGvkqdeis 132
                 ++ Pvf ++grv+++vs+ v +dei 
  CTQ29905.1 208 IVYPVFNRSGRVAAVVSILVPSDEIP 233
                 568**************977777775 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   5.1e-05       0.1      22      56 ..      28      62 ..      16      65 .. 0.87
   2 ?   -4.1   0.0       8.8   1.8e+04      37      45 ..     101     109 ..      96     110 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.1e-05
                CTTB-HHHHHHHHTS-HHHHHHHHHHHHHCTTEEE CS
      HTH_20 22 aegltaselaerldlskntlsyHLrvLeeagLvev 56
                 + lt++el++++d++k+t+++ +++Le  g++e+
  CTQ29905.1 28 HRDLTFAELHRLVDMPKATAYRVVQTLEYMGFLER 62
                56689**********************99***997 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 8.8
                 -HHHHHHHH CS
      HTH_20  37 skntlsyHL 45 
                 + +++s HL
  CTQ29905.1 101 DISQCSSHL 109
                 567888888 PP

>> HTH_27  Winged helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.2e-05      0.14      13      60 ..      25      67 ..      13      71 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.2e-05
      HTH_27 13 rhrrrrkkladlcgrlnvedshisyslkkLtekGLvertgdeadrrek 60
                ++++r  + a+l++ +++ ++++  ++  L+ +G++er     + r+ 
  CTQ29905.1 25 GEQHRDLTFAELHRLVDMPKATAYRVVQTLEYMGFLER-----NARTN 67
                356666677***************************55.....55555 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.4e-05      0.19      10      54 ..      20      63 ..      17      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.4e-05
                HHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 10 vLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                +L+a g    rdlt +el r  +++k+++ r+++ L+  G++er 
  CTQ29905.1 20 LLLAFGEQH-RDLTFAELHRLVDMPKATAYRVVQTLEYMGFLERN 63
                566666665.58*****************************9986 PP

>> Replic_Relax  Replication-relaxation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00014      0.27       5      45 ..      26      66 ..      22      74 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
  Replic_Relax  5 aehrvlTtrqiarllfashratarrrLarLrelgllsr.lrk 45
                  ++hr lT + ++rl  + + + a+r+ ++L++ g+l+r  r 
    CTQ29905.1 26 EQHRDLTFAELHRLVDMPKAT-AYRVVQTLEYMGFLERnART 66
                  79************9999999.***************95554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2077.58
//
Query:       CTQ29906.1  [L=249]
Description: putative short-chain dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-60  204.4   2.1    2.1e-60  204.2   2.1    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    2.4e-47  160.9   1.6    2.8e-47  160.7   1.6    1.0  1  adh_short        short chain dehydrogenase
      4e-14   52.9   2.1    5.6e-14   52.5   2.1    1.2  1  KR               KR domain
     0.0018   17.8   0.6     0.0034   16.9   0.6    1.6  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.019   14.9   1.3      0.024   14.5   0.5    1.5  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
       0.13   13.0   0.1       0.25   12.1   0.1    1.5  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.2   2.1   7.1e-64   2.1e-60       1     233 [.      14     246 ..      14     247 .. 0.95

  Alignments for each domain:
  == domain 1  score: 204.2 bits;  conditional E-value: 7.1e-64
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EG.CSS-GGGH-HHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.vlecDVtdeeqvealveevvekfgklDilvnnagiapk.lkgpfletsree 94 
                   Gaa+g+G++ A+a+a++Ga+vv++d+ + + ++++++l +++ +    ++D ++++++e++++++ ++ g++D+lvnna++a+    +++++ + + 
    CTQ29906.1  14 GAARGLGYHFAEACAAQGATVVMCDILQGElAESAHRLRQKGYQVeSHAIDLASQASIEQVFSAIGAQ-GSIDGLVNNAAMATGvGGKNMIDYDPDL 109
                   9*************************999989999999998554336******************998.9**************99*********** PP

                   HHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHH CS
  adh_short_C2  95 fdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdellee 191
                   +dr++ vn+++++l+++aa+pl++eg++ivn++s  a  + p   ay a+K+a++a+tr++A+elg+k+iR+Na++pg+++ +a++ ++   e  + 
    CTQ29906.1 110 WDRVMTVNVKGTWLVTRAAVPLLREGAAIVNVASDTALWGAPRLMAYVASKGAVIAMTRSMARELGEKRIRINAIAPGLTRVEATEYVP--AERHQL 204
                   ****************************************************************************************9..566667 PP

                   HHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 192 learaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                    e+   l  + +pe+v   +++L+sd++++itGq + v+gG+
    CTQ29906.1 205 YENGRALSGAQQPEDVTGSVVWLLSDLSRFITGQLIPVNGGF 246
                   77788888889******************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.7   1.6   9.5e-51   2.8e-47       1     190 [.       8     197 ..       8     202 .. 0.95

  Alignments for each domain:
  == domain 1  score: 160.7 bits;  conditional E-value: 9.5e-51
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S...S--SSGGGC CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGi...tgsgpfsel 96 
                 k ++vtGa++G+G+ +a+++a++Ga+vv++d+ + +l+e a  l+++g ++   ++D+++++++e++++++ +  g++d LvnNA++    g +++ ++
  CTQ29906.1   8 KRIVVTGAARGLGYHFAEACAAQGATVVMCDILQGELAESAHRLRQKGYQVESHAIDLASQASIEQVFSAIGA-QGSIDGLVNNAAMatgVGGKNMIDY 105
                 679******************************************************************9955.5************98878899999* PP

                 SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHH CS
   adh_short  97 seeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakel 190
                 + + w+rv+ vN++g+ l+tra++p +  +++++Ivnv+S +++ + + + aY AsK+av+++trs+a+el +++ir+na+aPGl++ + ++ +
  CTQ29906.1 106 DPDLWDRVMTVNVKGTWLVTRAAVPLL--REGAAIVNVASDTALWGAPRLMAYVASKGAVIAMTRSMARELGEKRIRINAIAPGLTRVEATEYV 197
                 **************************5..599******************************************************99988766 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   2.1   1.9e-17   5.6e-14       4     163 ..      11     170 ..       9     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 1.9e-17
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------...---TTT CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr...dkllee 99 
                 ++tG++ gLG ++a+  a++ga+ +++   +     + ++  ++l+++g +ve  a+D+++++++e+++++i a++ +i G ++ A ++     k + +
  CTQ29906.1  11 VVTGAARGLGYHFAEACAAQGATVVMCDILQ----GELAESAHRLRQKGYQVESHAIDLASQASIEQVFSAIGAQG-SIDGLVNNAAMATgvgGKNMID 104
                 89********************977665444....444556789****************************9666.****998665544233688889 PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHH CS
          KR 100 mtaedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaNaflDalaeyr 163
                  + + +++v+   vkG+w + ++  +  ++   +v ++S  +l+g++  ++Y a    + a+ ++ 
  CTQ29906.1 105 YDPDLWDRVMTVNVKGTWLVTRAAVPllREGAAIVNVASDTALWGAPRLMAYVASKGAVIAMTRSM 170
                 9*********************999989999**********************9887776666554 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.6   1.1e-06    0.0034       1      78 [.      10      98 ..      10     195 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHHH....T-SEEEE--S.---HH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfkee....qpdavihlAa.vggva 78
                i+VtGa+  +G ++++a++++g +v+  d l  +++ a+ ++         e + +dl  ++++e++f+       +d  ++ Aa   gv+
  CTQ29906.1 10 IVVTGAARGLGYHFAEACAAQGATVVMCDIL--QGELAESAHRlrqkgyqvESHAIDLASQASIEQVFSAIgaqgSIDGLVNNAAmATGVG 98
                89***************************99..4444444444578899*************99999975311136777787777666654 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.5   7.9e-06     0.024      10      80 ..      19      92 ..       9     103 .. 0.78
   2 ?   -2.5   0.0       1.4   4.1e+03     158     178 ..     162     182 ..     154     197 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.9e-06
                CHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-...HHHHCCCHHCEEEES-HHHHH.C-S CS
     3HCDH_N 10 mGagiaavfasagleVvlvdiseealekalekieksleklvekgklk...eeeveaalarisfttdleeav.dad 80
                +G   a+++a++g +Vv++di +  l++++++++++  ++ e+++++   ++++e++++ i ++ +++ +v +a 
  CTQ29906.1 19 LGYHFAEACAAQGATVVMCDILQGELAESAHRLRQKGYQV-ESHAIDlasQASIEQVFSAIGAQGSIDGLVnNAA 92
                7999***********************9999999954443.3344433348999999999999888888885555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHTT-EEEEEC CS
     3HCDH_N 158 etvatvvelakkigktpvvvk 178
                 +++a ++ +a+++g + ++++
  CTQ29906.1 162 AVIAMTRSMARELGEKRIRIN 182
                 555566666666666555554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   8.4e-05      0.25       8      72 ..      19      82 ..      12      97 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.4e-05
                     TSHHH.HHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEES CS
  Methyltransf_25  8 tGrlt.lalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssg 72
                      G +  +a+a++ g a+v+++Di ++ l++ ++r++++g++ve +  d+ +    ++ f ++ ++g
       CTQ29906.1 19 LGYHFaEACAAQ-G-ATVVMCDILQGELAESAHRLRQKGYQVESHAIDLASQASIEQVFSAIGAQG 82
                     454330444444.5.*******************************99988777777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1876.43
//
Query:       CTQ29907.1  [L=340]
Description: putative vanillate O-demethylase oxygenase subunit (VanA-like) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-18   65.9   0.0    3.9e-18   65.2   0.0    1.4  1  Rieske           Rieske [2Fe-2S] domain
  ------ inclusion threshold ------
      0.023   14.2   0.2       0.15   11.5   0.0    2.1  2  Aromatic_hydrox  Homotrimeric ring hydroxylase


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   4.3e-22   3.9e-18       2      84 ..      17      97 ..      16     110 .. 0.92

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 4.3e-22
                EEEEEEGGGC-TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEETTSBEEE-TTHHH CS
      Rieske  2 wvavakesdvpegdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwaydadGkvikgPaprp 84
                w++v ++ +v+   p++++++ge++vv+r++dg+v Al+d+C+Hrga+ls g   ++ ++ C++Hg +   +G+v+++Pa ++
  CTQ29907.1 17 WYPVLASWEVQ-SAPVGITRLGEQIVVWRNKDGQVQALEDRCPHRGARLSMGWNLGD-RIACWYHGVEVAGNGEVKDVPAVDR 97
                9*********8.88***********************************99887455.*********************9876 PP

>> Aromatic_hydrox  Homotrimeric ring hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.7e-05      0.15       9      71 ..     130     194 ..     122     214 .. 0.74
   2 ?    0.2   0.1     0.049   4.4e+02     148     235 ..     244     324 ..     231     329 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.7e-05
  Aromatic_hydrox   9 PleadlPpqlldddivvl.gkrrvikanWrlavengfdPgh.vlihkdsqlviesdlalplGfkP 71 
                      P e   P +l d +           k+n++ a+en +dP h  ++h  s+ + e d    +  +P
       CTQ29907.1 130 PDELSFPEELADSEKYSNfLCTAAWKCNYQYALENVMDPMHgTYLHSSSHSMAEGDRKADMVLQP 194
                      555556666666555554345567799**************779*****9999988877777777 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.049
  Aromatic_hydrox 148 elyvPidentyeyfellgkeaateeerkefedeyenelkeaaledfndddlvareamqtfyeddkGwaeeklyeldavivawrklvse 235
                       + vP d++  + f    + + +  +r+ ++  y+n+l +   e  +++d v  e++ +        ++e ly+ d  +   r+++ +
       CTQ29907.1 244 GMVVPEDNDNCRVFFWRIRGV-QGWQRDLWRFMYRNRLEKLHWE-VLEQDRVVLESLAPN-----ARDHEYLYQHDVGLSRLRRMMQK 324
                      577888877777665555544.3456778888899988887765.556777777777663.....33456667666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2696.34
//
Query:       CTQ29908.1  [L=102]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 767.49
//
Query:       CTQ29909.1  [L=107]
Description: Rieske (2Fe-2S) protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-19   70.1   0.0    1.3e-19   69.9   0.0    1.1  1  Rieske    Rieske [2Fe-2S] domain
    1.3e-15   57.2   0.0    1.5e-15   57.0   0.0    1.0  1  Rieske_2  Rieske-like [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   1.5e-23   1.3e-19       1      89 []       2      89 ..       2      89 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 1.5e-23
                CEEEEEEGGGC-TTCEEEEEETTEEEEEEE-TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEE.TTSBEEE-TTHHHEEEET CS
      Rieske  1 swvavakesdvpegdpltvkvggeplvvlrdedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwayd.adGkvikgPaprplatyp 89
                sw+ v+ +++v+e+ p++ ++ g+++ ++   dge+yAl+dvC+H+ a ls+g + e+g++eCp+H++++d ++G++++gP  r+l+ yp
  CTQ29909.1  2 SWIGVCDAEQVQEDFPYSGNIDGKEIGIYL-IDGEYYALEDVCPHAYALLSQGFV-EDGKVECPLHEAVFDvKTGQCLHGPGGRNLNRYP 89
                6999**************************.6***********************.899***************************9997 PP

>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   1.7e-19   1.5e-15       1     103 [.       2      99 ..       2     100 .. 0.94

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 1.7e-19
                 SEEEEEECCCS-TTB-EEEEETTEEEEEEE-TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS-TT.SB-BEE-EEEST CS
    Rieske_2   1 ewvpvckledlvketgvaalvdgkqvalfrlekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecledee.vslkvypvrved 98 
                 +w+ vc  e++ ++      +dgk++ +  + ++e yA+++++p +  + ls+G+v+d      v++Pl++ +fd ktG+cl+ +  ++l+ ypvrv d
  CTQ29909.1   2 SWIGVCDAEQVQEDFPYSGNIDGKEIGIYLI-DGEYYALEDVCPHA-YALLSQGFVEDG----KVECPLHEAVFDVKTGQCLHGPGgRNLNRYPVRVYD 94 
                 5****************************99.9************5.789******998....8******************966559*********** PP

                 SEEEE CS
    Rieske_2  99 gkvev 103
                 +++++
  CTQ29909.1  95 NQIQI 99 
                 ***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 915.97
//
Query:       CTQ29910.1  [L=337]
Description: Major facilitator transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-24   85.9  41.0    1.4e-19   70.2  17.2    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2  17.2   7.9e-24   1.4e-19       1     187 [.      11     202 ..      11     214 .. 0.84
   2 !   21.3  16.3     6e-09   0.00011      64     164 ..     214     315 ..     209     336 .. 0.68

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 7.9e-24
       MFS_1   1 lllaaflsalarsilgpalpl.alaedlgispse..igllltlyalgaavaslplGrlsd.rfGrrrvlllglllfalg.lllllfasslwlllvlrvl 94 
                 lll++++s+ +r ++++++     a ++++++    +g+l+t++ lg+++++l+l ++++ r+  r  ll +++++al  ++ +l+  sl  +l++r++
  CTQ29910.1  11 LLLLIIISYVDRVNISVMILNpEFAAHFQLNENRmlQGMLMTCFLLGYGFSALLLTPVIEsRWHYRQGLLSSIAIWALVcAISPLL-GSLLGMLIARIV 108
                 578899999999999999977788888776666666**********************995698888************3333334.67779******* PP

       MFS_1  95 qGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepperkrkspkee 187
                  G+++g lf++   +i d f+ +e g+ ++l ++g+slG ++g +l  +l++++gW ++fy+la++ ll++  l++ +lp+++++++r +p   
  CTQ29910.1 109 LGVAEGPLFSLKTRFINDNFAADEIGKPNALTALGVSLGLAVGFPLVTWLMAHVGWIGSFYALALLNLLLGGgLIWRFLPAPQVTSQRAKPGFS 202
                 **********************************************************************776766666666666666555443 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 6e-09
       MFS_1  64 vlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.Wravfyilaiv 160
                 ++++g ll+a ++l+l++ s+ + +l+++ + + ++ g+  +a+ a++ + +p+e  g+a+g++++  ++ a++ pll g+++ s+g  ++ f +l + 
  CTQ29910.1 214 LFIIGGLLTAGSVLALML-SQQPaMLALFMLAANVFWGLQGAAIPAVVQHHAPREAVGSAYGIINGIGNICAAFIPLLMGVVMKSVGsVSSGFSVLVAS 311
                 677888888888444445.77777888888888888889999999999999999999999999999999999999999999986666344444444443 PP

       MFS_1 161 slla 164
                  l+ 
  CTQ29910.1 312 QLIT 315
                 3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2505.83
//
Query:       CTQ29911.1  [L=94]
Description: hypothetical protein CH1034_300019 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 724.70
//
Query:       CTQ29912.1  [L=306]
Description: agmatinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-85  286.7   0.3    2.4e-85  286.4   0.3    1.0  1  Arginase  Arginase family
  ------ inclusion threshold ------
       0.18   12.0   0.1       0.27   11.4   0.1    1.3  1  UPF0489   UPF0489 domain


Domain annotation for each model (and alignments):
>> Arginase  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.4   0.3   2.7e-89   2.4e-85       2     278 ..      34     296 ..      33     298 .. 0.94

  Alignments for each domain:
  == domain 1  score: 286.4 bits;  conditional E-value: 2.7e-89
                 EEEEEEEE--TTTSSSGGGGGHHHHHHHHHHTSBT.HCHEETTTTESCCSEEEEEEEEE--SSCHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHH CS
    Arginase   2 dvallGvPfdaagsgrpGarfGPraireasarlee.aleynlelgvleelkivdlgdvavtpvdneevleqieeavaeilkagklpivlGGDHsialgi 99 
                 d ++ GvPfd+a+sgr+G r+GP+air+ s++l++ + ++  + ++ e+l++vd+gd+  +++d +e+ e+++++++++l+agk+++  GGDH ++l+ 
  CTQ29912.1  34 DWVITGVPFDMATSGRAGGRHGPAAIRQVSTNLAWeHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMSEKLQAHAEKLLAAGKRMLSFGGDHFVTLPL 132
                 789*******************************656666665566899************************************************** PP

                 HHHHHHHHSTTEEEEEESSS----SSCTTTBSSSTTSHHHHHHHHTSECGCEEEEEEE-STCSHHHHHHHHTTSEEEEHHHHHHHHHHHHHHHHHHHHT CS
    Arginase 100 lralaekygkplgvihfDAHaDlrtpetegsgnshGtpfrraaeegllkpkklvqiGirsvdneeyelakelgirvitmreidelglkavveeilervg 198
                 lra+a+++gk ++++hfDAH+D+     +g +++hGt+f+ a +egl++p+++vqiGir+        +k+ g++v+++ +++++++++v++++++ vg
  CTQ29912.1 133 LRAHAKHFGK-MALVHFDAHTDTYA---NGCEFDHGTMFYTAPNEGLIDPNHSVQIGIRTEF------DKDNGFTVLDAGQVNDRSVDDVIAQVKQIVG 221
                 ********95.************98...5789***************************844......5578**************************8 PP

                 CTTSEEEEEEEGGGBBTTTSTSSSS-BSS-B-HHHHHHHHHHHHCHSEEEEEEEE-B-GGGSSTTTHHHHHHHHHHHHHH CS
    Arginase 199 aeedpvylSfDiDvlDpavaPGtGtpepgGltlrellallrelaeklnlvgaDvvEvnPaldteaeqtarlaarlvrell 278
                   + pvyl+fDiD+lDpa+aPGtGtp+ gGlt++ +++l+r+l++ ln+vg+DvvEv+Pa+d+ +e+ta++aa+l+ e +
  CTQ29912.1 222 --DMPVYLTFDIDCLDPAFAPGTGTPVIGGLTSDRAIKLVRGLKD-LNIVGMDVVEVAPAYDQ-SEITALAAATLALE-M 296
                 ..67****************************************9.*****************.67**********99.4 PP

>> UPF0489  UPF0489 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1     3e-05      0.27      24      39 ..     140     155 ..     130     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3e-05
     UPF0489  24 psdlslvHlDaHpDll 39 
                 + ++ lvH+DaH+D+ 
  CTQ29912.1 140 FGKMALVHFDAHTDTY 155
                 57899*********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2290.32
//
Query:       CTQ29913.1  [L=658]
Description: biosynthetic arginine decarboxylase, PLP-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-71  241.1   0.1    1.6e-71  240.6   0.1    1.2  1  Orn_Arg_deC_N   Pyridoxal-dependent decarboxylase, pyridoxal 
    8.5e-24   83.6   0.8    2.5e-23   82.1   0.8    1.9  1  Arg_decarb_HB   Arginine decarboxylase helical bundle domain
    1.2e-16   61.0   3.5    1.9e-16   60.3   1.2    2.5  2  Arg_decarbox_C  Arginine decarboxylase C-terminal helical ext


Domain annotation for each model (and alignments):
>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.6   0.1   2.7e-75   1.6e-71       1     247 []     100     367 ..     100     367 .. 0.98

  Alignments for each domain:
  == domain 1  score: 240.6 bits;  conditional E-value: 2.7e-75
                    HHHHHHHHHHHHHHCT...CCEEEEEGGG---HHHHHHHHHTT..EEEEESSHHHHHHHHHCTTTGGGEEEEESS--HHHHHHHHHCTHT....EE CS
  Orn_Arg_deC_N   1 lasierklkrwkkalp...rikvfYavKansdlavlellaelG..lgldcaSkaElelvlaagvsperiifanpckqreelryalekgvk....vv 87 
                    l+si++++kr++++++   +++++Y++K+n++++v+e+l ++G  lgl+++SkaEl++vla++++++++i++n++k+re++r al  +++    ++
     CTQ29913.1 100 LRSINAAFKRARESYGyngDYFLVYPIKVNQHRRVIESLIHSGepLGLEAGSKAELMAVLAHAGMTRSVIVCNGYKDREYIRLALVGEKMghkvYL 195
                    579**************9********************************************************************99999999** PP

                    EESSHHHHHHHHHHHCC....EEEEEEEE-SCCSSSSTCCCSSSTTSSSS.EEHC..HHHHHHHHHHHHTTEEEEEEE---BSSC-SCHHHHHHHH CS
  Orn_Arg_deC_N  88 tvdnveeleklaklape....akvllRiktdvsaatcelistggessKFG.aale..eavealleaakeenlqlvGvsfHvGSgvsdleafvkave 176
                    ++++++e++++ ++a++    +++ +R+++ +s+++ +++s+gge+sKFG aa++  + ve l+ea + e+lql  ++fH+GS+++++++++++v+
     CTQ29913.1 196 VIEKMSEIAIVLEEAERlnvvPRLGVRARL-ASQGSGKWQSSGGEKSKFGlAATQvlQLVEILREAGHLESLQL--LHFHLGSQMANIRDIATGVR 288
                    *****************99999********.*******************6556699*****************..******************** PP

                    HHHHHHHHHHHHT---SEEE--S-BS-HCSTTSSSST......HHHHHHHHHHHHHHHHH..TSSS-EEEE--SHHHHG CS
  Orn_Arg_deC_N 177 kalklfdelaelGvklkiLdvGGGfgveyeeeeeplk......leeiaekirealeeafp..gdkevtiiaEpGRalva 247
                    +++++++el++lGv+++++dvGGG+gv+ye+++++++      l+e+a++i++a+++a++  g +++t+i+E+GRa++a
     CTQ29913.1 289 ESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDcsvnygLNEYANNIIWAIGDACEenGLPHPTVITESGRAVTA 367
                    ************************************************************99**************997 PP

>> Arg_decarb_HB  Arginine decarboxylase helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.8   4.2e-27   2.5e-23       2      84 .]     392     478 ..     391     478 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 4.2e-27
  Arg_decarb_HB   2 edapellqnLwelleels....qrnlqEiyhDavhyldearelFrlGllsLeerAkaEqlylaicrkirkllkeeerapreildeLn 84 
                    eda + lq++we++ e++    +r+l+E++hD + +l +++  ++ G  +L+erA+aEqlyl++c++++k+l++++ra+r i+deL+
     CTQ29913.1 392 EDAARPLQSMWETWLEMHetgnRRSLREWLHDSQMDLHDIHIGYSSGTFNLQERAWAEQLYLNMCHEVQKQLDPSNRAHRPIIDELQ 478
                    8999*********************************************************************************96 PP

>> Arg_decarbox_C  Arginine decarboxylase C-terminal helical extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.44   2.6e+03      28      42 ..      26      40 ..      20      42 .. 0.84
   2 !   60.3   1.2   3.2e-20   1.9e-16       1      51 []     606     655 ..     606     655 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.44
  Arg_decarbox_C 28 rLtpeerqalleele 42
                    +++++e+ ++l++++
      CTQ29913.1 26 AMSSQEASKMLRTYN 40
                    6999********996 PP

  == domain 2  score: 60.3 bits;  conditional E-value: 3.2e-20
  Arg_decarbox_C   1 VadVLryVqYdpeeLlerlrrqveaagrLtpeerqalleeleagLkgyTYL 51 
                     Vad+L+yVq dp+ Ll+++r+qv +  +L+++ +q++lee+eagL gyTYL
      CTQ29913.1 606 VADMLQYVQLDPNTLLTQFRDQVKNT-GLDDALQQQFLEEFEAGLYGYTYL 655
                     89***********************9.***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 4902.64
//
Query:       CTQ29914.1  [L=384]
Description: methionine adenosyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-70  234.2   0.0    7.7e-70  233.2   0.0    1.5  1  S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal 
    1.4e-46  157.6   0.0    4.5e-46  156.0   0.0    1.8  2  S-AdoMet_synt_M  S-adenosylmethionine synthetase, central dom
    2.9e-43  146.6   0.1    5.4e-43  145.7   0.1    1.5  1  S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal 
  ------ inclusion threshold ------
       0.11   11.3   0.4        1.1    8.0   0.1    2.3  3  AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synt


Domain annotation for each model (and alignments):
>> S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.2   0.0   1.7e-73   7.7e-70       1     138 []     233     370 ..     233     370 .. 1.00

  Alignments for each domain:
  == domain 1  score: 233.2 bits;  conditional E-value: 1.7e-73
                      S-TTTTS-EETTS-TTTTTTTTSS---S---TTB-TTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEE-TT-SS-SEEEEEE-S-BSS-HHHH CS
  S-AdoMet_synt_C   1 iGgpkgdaGltgrkiivdtYgglaahgggafsgKdptkvDrsaayaaryvaknlvaaglakkvevqlsYaigvaepvsisvetfgtekvseeei 94 
                      iGgp+gd+GltgrkiivdtYgg+a+hgggafsgKdp+kvDrsaayaaryvakn+vaagla+++e+q+sYaigvaep+si+vetfgtekv++e++
       CTQ29914.1 233 IGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQL 326
                      8********************************************************************************************* PP

                      HHHHHHH----HHHHHHHHTTTSS--TGGGSS-SSS--T-TTS. CS
  S-AdoMet_synt_C  95 aeivkevfdlrpaaiieeldLkkpiykktaayghfgreelpwek 138
                      + +v+e fdlrp ++i++ldL +piyk+taayghfgre++pwek
       CTQ29914.1 327 TLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGHFGREHFPWEK 370
                      *******************************************7 PP

>> S-AdoMet_synt_M  S-adenosylmethionine synthetase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.77   3.4e+03      86     103 ..      18      35 ..       8      53 .. 0.50
   2 !  156.0   0.0     1e-49   4.5e-46       1     120 []     114     231 ..     114     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.77
  S-AdoMet_synt_M  86 klredlkekvikkvlkee 103
                      k+++++ + v++++l+++
       CTQ29914.1  18 KIADQISDAVLDAILEQD 35 
                      344444444444444222 PP

  == domain 2  score: 156.0 bits;  conditional E-value: 1e-49
  S-AdoMet_synt_M   1 eigAgDqGimfGYAtdeteelmPlpillahklaerlaelrkegeleylrpDaKsqvtveYeeelkpvrvdtvvistqhdeevsqeklredlkek 94 
                      e+gAgDqG+mfGYAt+et+ lmP+p+++ah+l++r ae+rk+g+l++lrpDaKsqvt++Y +++k v +d+vv+stqh+e+++q++l+e+++e+
       CTQ29914.1 114 EQGAGDQGLMFGYATNETDVLMPAPVTYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY-DDGKIVGIDAVVLSTQHAEDIDQKSLQEAVMEE 206
                      69**********************************************************.599****************************** PP

  S-AdoMet_synt_M  95 vikkvlkeelldekktkllinptGkF 120
                      +ik++l++e+l++ +tk++inptG+F
       CTQ29914.1 207 IIKPILPTEWLNA-STKFFINPTGRF 231
                      *******999987.5**********9 PP

>> S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.7   0.1   1.2e-46   5.4e-43       2      99 .]       4     101 ..       3     101 .. 0.99

  Alignments for each domain:
  == domain 1  score: 145.7 bits;  conditional E-value: 1.2e-46
  S-AdoMet_synt_N   2 ylftsesVseGHPDkvadqisdaildailkedpkarvacetlvttglvvvageittkakvdiekivrevikeigYekeelgfdaktcevlvale 95 
                      +lftsesVseGHPDk+adqisda+ldail++dpkarvacet+v+tg+v+v geitt+a vdie+i+r++++eigY ++++gfda++c+vl+a+ 
       CTQ29914.1   4 HLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIG 97 
                      79******************************************************************************************** PP

  S-AdoMet_synt_N  96 eqsp 99 
                      +qsp
       CTQ29914.1  98 KQSP 101
                      ***7 PP

>> AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synthetase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1   0.00024       1.1      25      44 ..      12      31 ..       6      59 .. 0.79
   2 ?    0.7   0.0      0.04   1.8e+02      85     165 ..      51     128 ..      43     151 .. 0.80
   3 ?   -1.7   0.0      0.22   9.7e+02     276     329 ..     237     288 ..     168     334 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00024
                     -TTSHHHHHHHHHHHHHHHH CS
  AdoMet_Synthase 25 GiGHPDsiaDgiaeavsral 44
                       GHPD+iaD+i++av  a+
       CTQ29914.1 12 SEGHPDKIADQISDAVLDAI 31
                     67************997765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.04
                      EEEEEEEEEEE.EEE--HHHHHHHHHHH..HHHHH-SS--TTTSEEEEEEEEEEEEHHHHHHCH-SS..-BESSSEEEEEEES CS
  AdoMet_Synthase  85 illsgratkevegekipveeialeaake..ylkenlraldlekdvivdvklgkgsadLkdvferkkkevplaNDtSfgvgyap 165
                      +l++g  t+   +  +++eei+ ++++e  y+++ +  +d + +  v   +gk s d+++ ++r++   + a D  +  gya 
       CTQ29914.1  51 VLVGGEITT---SAWVDIEEITRNTVREigYVHSDMG-FDAN-SCAVLSAIGKQSPDINQGVDRADPLEQGAGDQGLMFGYAT 128
                      666666666...5679999*******98668888887.5766.56777899999***99999998886688999999999985 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.22
                      TT--EETTSS--TTSSB-TTS----S--TTS-TTT-HHHHHHHHHHHHHHHHHH CS
  AdoMet_Synthase 276 egDdGsvGRGNRvnGlitpnrpmslEAaaGKNPvsHvGKiYnvlaneiakeive 329
                      +gD+G +GR   v     + r  +  A +GK P s v +     a+ +ak+iv+
       CTQ29914.1 237 MGDCGLTGRKIIVDTYGGMARH-GGGAFSGKDP-SKVDRSAAYAARYVAKNIVA 288
                      4555555554444444444443.3345555555.34555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3214.26
//
Query:       CTQ29915.1  [L=464]
Description: D-galactose transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.7e-139  463.4  28.2   8.7e-139  463.2  28.2    1.0  1  Sugar_tr        Sugar (and other) transporter
      6e-42  143.8  44.9    7.8e-31  107.3  16.8    2.0  2  MFS_1           Major Facilitator Superfamily
    1.5e-09   36.8   5.6    1.5e-09   36.8   5.6    2.1  2  TRI12           Fungal trichothecene efflux pump (TRI12)
    3.9e-08   32.3  36.1    1.1e-07   30.8   4.8    3.6  3  MFS_2           MFS/sugar transport protein
  ------ inclusion threshold ------
       0.28   11.0   0.1       0.28   11.0   0.1    2.9  2  PglL_A          Protein glycosylation ligase
        2.5    7.0   7.5         48    2.9   0.6    3.4  3  SHR3_chaperone  ER membrane protein SH3


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  463.2  28.2  2.9e-142  8.7e-139       1     451 [.      18     450 ..      18     451 .. 0.97

  Alignments for each domain:
  == domain 1  score: 463.2 bits;  conditional E-value: 2.9e-142
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 v+++aal+gllfg d+gvi+++l +++  ++f+ s +++  e       ++vs++++Ga++G++ +g+l+ ++GRkksl+i+a+lfv+g++ +aaa+  
  CTQ29915.1  18 VCFLAALAGLLFGLDIGVIAGALPFIA--NEFQISAHTQ--E-------WVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAP-- 103
                 79*************************..7777777774..3.......************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                  +ve+l+v+Rvl+G++vG+as+++P+y+sEiAp+k+Rg ++s+yql+it+Gil a+ ++++++++++   wr++lg+ ++pa+llli+++flP+SPr++
  CTQ29915.1 104 -NVEILLVSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYSGA---WRWMLGVIIIPAVLLLIGVIFLPDSPRWF 198
                 .******************************************************************...***************************** PP

                 HHTT-HHHHHHHHHHHHHC.HHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrge.edadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks...llvt 293
                   k++  +a++vl +lr++ ++a+rel+e+ +sl+ +q+     w+ ++++ + r+++++g++lq++qq+tG+n+imyy+p+ife +g+ ++   +++t
  CTQ29915.1 199 AAKRRFVDAERVLLRLRDTsAEAKRELDEIRESLKVKQSG----WSLFKDNSNFRRAVFLGILLQVMQQFTGMNVIMYYAPKIFELAGYANTteqMWGT 293
                 ***************777669****************665....*******99**************************************99****** PP

                 HHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHH CS
    Sugar_tr 294 iivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiav 392
                 +ivg +n++atf+ai lvdr+GR+++l+lG+++ma+ + +lg++++++ ++ + a+++a+ ++++fi+ fa++ gp++wvl+sE++p++ R++++++++
  CTQ29915.1 294 VIVGLTNVLATFIAIGLVDRWGRKPTLILGFIVMAAGMGVLGTMMHIGIHS-STAQYIAVLMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCST 391
                 ******************************************888888888.59********************************************* PP

                 HHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGG CS
    Sugar_tr 393 avnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieel 451
                 a+nw+an++++ +f ++++++g + +f+v++gl+vlfi+ +++ +petk+++le+ie+ 
  CTQ29915.1 392 ATNWIANMIVGATFLTMLNSLGSANTFWVYGGLNVLFILLTLWLIPETKNVSLEHIERN 450
                 ********************************************************985 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3  16.8   2.6e-34   7.8e-31       2     240 ..      23     283 ..      22     288 .. 0.82
   2 !   43.7  19.4   5.5e-15   1.6e-11      32     180 ..     287     444 ..     283     462 .. 0.85

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 2.6e-34
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +la++l +l++++++ alp ++a++++is++++ ++++  ++gaav+++  G+ls ++Gr++ l++g++lf++g+l+ + a+++ +llv+rvl Gl+ g
  CTQ29915.1  23 ALAGLLFGLDIGVIAGALP-FIANEFQISAHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEILLVSRVLLGLAVG 120
                 7899***************.******************************************************55555448888************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 ++  ++  ++++++p++ rg++i+++++++ +G++ ++l   +++ s+ Wr++  ++ i ++l+++    +++ ++++r+  ++++             
  CTQ29915.1 121 VASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYSGAWRWMLGVIIIPAVLLLI---GVIFLPDSPRWFAAKRRFVdaervllrlrd 216
                 **********************************99999999***9999**************988...555556666666655555555889999888 PP

       MFS_1 189 .........kgtgpaplvp..........awkallkdpvlw.....illialllfffgfsglltllplylqevlgl 240
                                   +          +w++++ +  +       +l+ +   f+g++ ++++ p +  e  g+
  CTQ29915.1 217 tsaeakrelD--------EireslkvkqsGWSLFKDNSNFRravflGILLQVMQQFTGMNVIMYYAPKI-FELAGY 283
                 8666555541........133344455688888888888844211244444444466666699999985.666666 PP

  == domain 2  score: 43.7 bits;  conditional E-value: 5.5e-15
       MFS_1  32 seigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllf...a.....sslw.lllvlrvlqGlgagalfpagaaliadwfpkeerg 120
                 +e+ + +++++l+ ++a++++  l+dr+Gr+++l+lg++++a+g ++l+++   +     +++  +l++l ++ G+++ ++ p++ +l +++ p + r 
  CTQ29915.1 287 TEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLILGFIVMAAGmGVLGTMmhiGihsstAQYIaVLMLLMFIVGFAM-SAGPLIWVLCSEIQPLKGRD 384
                 7889****************************************8888885465154456667778***********8.8899999************* PP

       MFS_1 121 raigllsagfslGa.ilgpllggllasslgWravfyilaivsllafvlfllllpeepperk 180
                 ++i + +a++ ++  i+g+ +  +l  slg   +f++ +++ +l+++l l+l+pe++  + 
  CTQ29915.1 385 FGITCSTATNWIANmIVGATFLTMLN-SLGSANTFWVYGGLNVLFILLTLWLIPETKNVSL 444
                 **************556677777776.99999***************98899988766554 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   5.6   5.1e-13   1.5e-09      39     225 ..      10     198 ..       2     210 .. 0.78
   2 ?    2.8   4.9      0.01        31      67     167 ..     274     386 ..     244     441 .. 0.57

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 5.1e-13
       TRI12  39 sprvvasfaafslnvvatyfvlq..asasalpnilqdvgqsen.sslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntl 134
                 s + ++ f +f   ++   f l+    a alp i ++   s   +  + +    g av  +  g l+ ++gr+  +++  il + g++  ++a +++ l
  CTQ29915.1  10 SNKTMTFFVCFLAALAGLLFGLDigVIAGALPFIANEFQISAHtQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEIL 108
                 666677777777777777777762246899****99988775415555666778********************************************* PP

       TRI12 135 laamtllgvaagpag.asplfvgelmsnktkflgllivs.ipvvvtsglspylgq.rlaiqgswrwifyiyiitsaiavllivvwyyppsfaql 225
                 l +  llg+a g a  ++pl++ e+  +k +  g +i     ++++  l+ yl +  ++  g+wrw++ + ii +   +lli v + p s + +
  CTQ29915.1 109 LVSRVLLGLAVGVASyTAPLYLSEIAPEKIR--GSMISMyQLMITIGILGAYLSDtAFSYSGAWRWMLGVIIIPAV--LLLIGVIFLPDSPRWF 198
                 ************997478*******999876..55444404455666689***862689*********99888654..3556566777766555 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.01
       TRI12  67 lpnilqdvgqsen.sslfstl.wttgqavsilvmgrltdrfgrrpfvilthil.....glvgaiv.....gctatkfntllaamtllgvaagpagaspl 153
                  p+i++  g ++  + ++ t+   + + ++ ++   l dr+gr+p +il  i+     g++g+++       ta+ +  l+  m ++g a        +
  CTQ29915.1 274 APKIFELAGYANTtEQMWGTViVGLTNVLATFIAIGLVDRWGRKPTLILGFIVmaagmGVLGTMMhigihSSTAQYIAVLMLLMFIVGFAMSAGPLIWV 372
                 5666655555543133444431334555666777789********998888853332266676541111134566666666666666655433333334 PP

       TRI12 154 fvgelmsnktkflg 167
                 +  e+   k + +g
  CTQ29915.1 373 LCSEIQPLKGRDFG 386
                 44555555555555 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5  17.0   0.00021      0.63     228     342 ..      21     133 ..       4     193 .. 0.86
   2 !   30.8   4.8   3.6e-11   1.1e-07     217     341 ..     239     376 ..     211     378 .. 0.75
   3 ?   -1.3   0.4      0.21   6.2e+02     144     309 ..     395     435 ..     380     445 .. 0.45

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00021
       MFS_2 228 illllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagf 326
                 + +l++ll+ l +gv +g+l + ++ +  ++   +++   ++ +a++g++   +l  +lg+k++ ++ga+l ++++++  ++   n+ ++lv  v+ g+
  CTQ29915.1  21 LAALAGLLFGLDIGVIAGALPFIANEFQISAHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAA--PNVEILLVSRVLLGL 117
                 34556677788899**************************************************************999998..788888899999999 PP

       MFS_2 327 gvgvaallpwsmladv 342
                 +vgva ++++  l+++
  CTQ29915.1 118 AVGVASYTAPLYLSEI 133
                 9999888877766665 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 3.6e-11
       MFS_2 217 lkevfrnrafl.illllfllaalalgvlnglllYyltyvlg.ng....saasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlll 309
                 +  + +n  f+ +++l++ll+++ ++ + +  +Yy+ ++ + +g    ++ ++ +++v + ++l+++++  l+ r+g+k t +lg++++++++ ++  +
  CTQ29915.1 239 WSLFKDNSNFRrAVFLGILLQVMQQFTGMNVIMYYAPKIFElAGyantTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLILGFIVMAAGMGVLGTM 337
                 44555666675268999999*****************99875441111233344444466677*************************99999988888 PP

       MFS_2 310 ........qpsnlllflvllviagfgvgvaallpwsmlad 341
                         +++ ++++++l++i+gf+  +a+ l+w + ++
  CTQ29915.1 338 mhigihssTAQYIAVLMLLMFIVGFA-MSAGPLIWVLCSE 376
                 8*****96666677777777777777.7788888888765 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.21
       MFS_2 144 vlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervemrkkekteqkeklslleqlkevfrnraflillllfllaalalgv 242
                 +++ +++ +   ++                                                                                     
  CTQ29915.1 395 WIANMIVGATFLTM------------------------------------------------------------------------------------- 408
                 33333333333333..................................................................................... PP

       MFS_2 243 lnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlll 309
                                                            lg  nt+ +   l +++ +l+l+l
  CTQ29915.1 409 ----------------------------------------LNSLGSANTFWVYGGLNVLFILLTLWL 435
                 ........................................333444443333333333333333333 PP

>> PglL_A  Protein glycosylation ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.8       1.9   5.6e+03      17      25 ..      67      75 ..      65      75 .. 0.84
   2 ?   11.0   0.1   9.2e-05      0.28       9      20 ..     300     311 ..     299     311 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.9
      PglL_A 17 lGlaaalyL 25
                 G +++++L
  CTQ29915.1 67 VGAVGSGWL 75
                6999****9 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 9.2e-05
      PglL_A   9 NhlATllalGla 20 
                 N+lAT++a+Gl+
  CTQ29915.1 300 NVLATFIAIGLV 311
                 **********97 PP

>> SHR3_chaperone  ER membrane protein SH3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.6     0.016        48       8     102 ..      84     178 ..      80     182 .. 0.89
   2 ?    2.3   0.0     0.023        70     139     178 ..     182     223 ..     176     231 .. 0.70
   3 ?    2.2   2.7     0.025        76      52     102 ..     314     364 ..     307     450 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.016
  SHR3_chaperone   8 aliigstsFflGvlfanfpyDynlLwssesteeafdaalehykflhaspplikrilhiviglgliglliklykpsednllFdgaSLvLyvvgvvv 102
                      l ig+  F+ G lf+  +  +++L  s +        +++   l+ s  + ++i   +i++  + + i ++ +  +++ F ++    +++gv++
      CTQ29915.1  84 SLMIGAILFVAGSLFSAAAPNVEILLVSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYSGAWRWMLGVII 178
                     68999********************9999998888888889999999999999999999999999999999999999999999999999999987 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.023
  SHR3_chaperone 139 alvLvGVlvLQ.aGqwYaerkeqeelee.feeeeaeeaaaka 178
                     +l+L+GV++L    +w+a ++   ++e+ + + ++++a+ak+
      CTQ29915.1 182 VLLLIGVIFLPdSPRWFAAKRRFVDAERvLLRLRDTSAEAKR 223
                     6899******61567***999888888755555555444444 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.025
  SHR3_chaperone  52 lhaspplikrilhiviglgliglliklykpsednllFdgaSLvLyvvgvvv 102
                     + + p li   + + +g+g++g ++ +   s  +++     L++++vg  +
      CTQ29915.1 314 WGRKPTLILGFIVMAAGMGVLGTMMHIGIHSSTAQYIAVLMLLMFIVGFAM 364
                     7788999***************************99999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       999  (0.0557198); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.40
# Mc/sec: 3441.49
//
Query:       CTQ29916.1  [L=166]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-17   64.0   0.1    1.6e-17   63.4   0.0    1.3  1  SprT-like       SprT-like family
    9.9e-09   35.0   4.8    1.9e-08   34.0   4.8    1.4  1  Zn_ribbon_SprT  SprT-like zinc ribbon domain
    4.8e-05   23.5   0.7    0.00012   22.2   0.3    1.6  2  DUF45           Protein of unknown function DUF45
  ------ inclusion threshold ------
       0.14   12.5   0.1       0.21   11.9   0.1    1.3  1  DUF3267         Putative zincin peptidase
       0.47   10.2   5.4        3.4    7.5   0.5    2.3  2  zf-CSL          CSL zinc finger


Domain annotation for each model (and alignments):
>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   4.5e-21   1.6e-17       3     101 ..      20     108 ..      18     123 .. 0.90

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 4.5e-21
   SprT-like   3 elfkklddavfggqaaggvkiiwskrlnttaGranlkratvrhhasIeLseklldsrsedrllntLaHElcHlalfvisgvrnnpHGaeFkawaakvek 101
                 e ++++++++ ++ a++++ ++++   +t+aG+a+l++      ++I+L++ ll +++++++ ++++HEl+Hl++++ +g r  pHG+e+k++++ v  
  CTQ29916.1  20 EHLANANRKLERRYAEPTLVYQQR---GTSAGTAWLEK------NEIRLNPVLLLENQREFIDEVVPHELAHLLVWQHFG-RVAPHGKEWKWMMESVLG 108
                 667788888998889999999999...***********......************************************.**************9944 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   4.8   5.4e-12   1.9e-08       2      34 ..     126     162 ..     125     165 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 5.4e-12
  Zn_ribbon_SprT   2 kyvYrCtgCgreythhlsirrhn........YrCrrCkgtL 34 
                     ++ YrC +C+    h+l++rrhn        YrC rC+  L
      CTQ29916.1 126 TFPYRC-RCQ---QHQLTVRRHNrvvrgeatYRCVRCGDLL 162
                     799***.***...************************9876 PP

>> DUF45  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.3   3.3e-08   0.00012     105     182 ..      11      88 ..       3      91 .. 0.70
   2 ?   -1.1   0.0      0.45   1.6e+03      35      76 ..     100     144 ..      95     159 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 3.3e-08
       DUF45 105 eewlrkeakeeleerlaklaaklgvkp..rsvsikdmktrWGsc.sskgkirlnwrL.vkappevidYVvvHElaHlleknH 182
                 ++ + +     l e la+  +kl++++  + +  ++  t  G+   +k++irln  L ++ ++e+id Vv HElaHll  +H
  CTQ29916.1  11 QQAVMR----SLREHLANANRKLERRYaePTLVYQQRGTSAGTAwLEKNEIRLNPVLlLENQREFIDEVVPHELAHLLVWQH 88 
                 444444....4555555555555554411445556666778898899*******8761567889*************99888 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.45
       DUF45  35 kwiekklakleer.akeaekelesgesfpl..lGkkyrlkvekgk 76 
                 kw+ +++  +++r  +  e   +++++fp+  + ++++l v++++
  CTQ29916.1 100 KWMMESVLGVPARrTHRFELASVRQNTFPYrcRCQQHQLTVRRHN 144
                 667777766766655555666666777777666777777777666 PP

>> DUF3267  Putative zincin peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   5.8e-05      0.21       5      31 ..      75     101 ..      74     134 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.8e-05
     DUF3267   5 vilHEllHglffklfgkkpkkkvkfgi 31 
                 v+ HEl+H+l+++ fg+   ++ ++++
  CTQ29916.1  75 VVPHELAHLLVWQHFGRVAPHGKEWKW 101
                 689************988777777733 PP

>> zf-CSL  CSL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.5   0.00095       3.4      13      26 ..     123     136 ..     114     145 .. 0.76
   2 ?    4.9   0.4     0.006        21      18      26 ..     152     161 ..     143     165 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00095
                 TTTEEEEEETTSSE CS
      zf-CSL  13 eeesyyypCRCgde 26 
                  ++++ y CRC+++
  CTQ29916.1 123 RQNTFPYRCRCQQH 136
                 46689******986 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.006
                 EEEE.TTSSE CS
      zf-CSL  18 yypC.RCgde 26 
                 +y C RCgd 
  CTQ29916.1 152 TYRCvRCGDL 161
                 89******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1260.30
//
Query:       CTQ29917.1  [L=235]
Description: DNA-specific endonuclease I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-48  163.3   6.5    1.3e-47  162.5   6.5    1.4  1  Endonuclease_1  Endonuclease I


Domain annotation for each model (and alignments):
>> Endonuclease_1  Endonuclease I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.5   6.5     7e-52   1.3e-47      26     233 .]      45     230 ..      32     230 .. 0.93

  Alignments for each domain:
  == domain 1  score: 162.5 bits;  conditional E-value: 7e-52
  Endonuclease_1  26 tlyktsdldkyyendgsvldlysenptgadvsftygtnqcg..stkqegec..ynrEHivPasvfgeqrq.................pmesDahh 99 
                     ++y+++ +d   + ++ v+dl+s                cg  ++k+e+++   ++EH+vPa+ fg+qrq                 +mesD+h+
      CTQ29917.1  45 DFYCGCKID--WQGKKGVIDLES----------------CGykVRKNENRAsrVEWEHVVPAWQFGHQRQcwqeggrkncakdpeyrKMESDMHN 121
                     567777776..555666667777................88878999999999****************************************** PP

  Endonuclease_1 100 vvptdgevNadRsnfpygevatatytskngskkpenlgssnva.dykstvfEPidefkGdiARallYmatrYenkiakaqskvldgssdqvfekt 193
                     + p++gevN+dR+nf y+++        ng +   ++g+++++ d+k ++ EP    +G+iAR+++Ym +rY+++++++q               
      CTQ29917.1 122 LQPAVGEVNGDRGNFMYSQW--------NGGE--GQYGQCTMKvDFKDKIAEPPARARGAIARTYFYMRDRYQLNLSRQQ--------------- 191
                     ********************........7777..8*********************************************............... PP

  Endonuclease_1 194 llnlllkWhkqdPvsakEiernnaiaavqgnrNPfidhpe 233
                       +l+ +W+kq+Pv a+E+er+++ia+vqgn+NP++++++
      CTQ29917.1 192 -TQLFTAWNKQYPVTAWECERDERIAKVQGNHNPYVQQAC 230
                     .99*********************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1836.87
//
Query:       CTQ29918.1  [L=243]
Description: hypothetical protein CH1034_300026 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-72  242.2   0.1    4.8e-72  242.0   0.1    1.0  1  Methyltrans_RNA  RNA methyltransferase
  ------ inclusion threshold ------
      0.018   15.0   0.0       0.03   14.2   0.0    1.2  1  Helicase_IV_N    DNA helicase IV / RNA helicase N terminal


Domain annotation for each model (and alignments):
>> Methyltrans_RNA  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.0   0.1   5.3e-76   4.8e-72       2     225 ..      19     236 ..      18     237 .. 0.98

  Alignments for each domain:
  == domain 1  score: 242.0 bits;  conditional E-value: 5.3e-76
                      EEEHHHHHHHHTTTT--TT-EEEEEESSSEEEEEEEEEEESSEEEEEEEEEEE---SSSSEEEEEEE--SSHHHHHHHHHHHHTT-SEEEEEE- CS
  Methyltrans_RNA   2 sltdeeahHlvkVlRlkegdeiklfdgdgkeyeaeieeiskkkvtvkilekeeenkespekitlaqalpkgdklelilqkatElGvseivplis 95 
                       l+d+ a+H+ +VlR+++g++++lfdg+++ ++a i+e+ kk+vtv++l+ e+ ++esp +i+l q++++g+k+e+++qk++ElGvs i+pl+s
       CTQ29918.1  19 ALSDDAANHVGRVLRMTAGQHLQLFDGSNQVFDAVITEAGKKNVTVEVLSGEPDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFS 112
                      6899****************************************************************************************** PP

                      TTSSS...HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEEEEEHHHHHHHCSCCEEEEEEETTSSEBGGGSSHCCHTHHCSEEEEEE--TT--- CS
  Methyltrans_RNA  96 ersvvkldekkkdkklerwqkilieAaeQsgrtrlpevkepislkelleelkeadlklildeeekksleelsekkkelkevkvlliiGPEGGfs 189
                      er+ vkld ++ +kk+++wqki+i+A+eQsgr+++pe++++++l+ +++e+++  + l l++++++s+++l    +     +v l+iGPEGG+s
       CTQ29918.1 113 ERCGVKLDAERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLEAWCAEQDSGLK-LNLHPRASASINTLPLPVE-----RVRLLIGPEGGLS 200
                      ****************************************************9966.******9999999999887.....8************ PP

                      HHHHHHHHHTTCEEEB-SSS---HHHHHHHHHHHHH CS
  Methyltrans_RNA 190 ekEiellkeagfkpvsLgpriLRteTAalaalsalq 225
                      ++Ei+++ + +f+ + Lgpr+LRteT al+a++alq
       CTQ29918.1 201 AEEIAMTAQYQFTDILLGPRVLRTETTALTAITALQ 236
                      **********************************98 PP

>> Helicase_IV_N  DNA helicase IV / RNA helicase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.4e-06      0.03      82     147 ..     122     190 ..     119     193 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.4e-06
  Helicase_IV_N  82 qtllssyqqWskeqvqaladvlqkkeeeieefvqqqkylstsev...anlvekisaqlkalplplerle 147
                    ++l++++qqW+k +++a+++  ++++ ei+   q ++++ +++     nl  + sa++++lplp+er++
     CTQ29918.1 122 ERLQKKIQQWQKIAIAACEQSGRNVVPEIRPAMQLEAWCAEQDSglkLNLHPRASASINTLPLPVERVR 190
                    6899***********************************999863336899999***********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2080.60
//
Query:       CTQ29919.1  [L=316]
Description: glutathione synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-79  264.7   0.0    3.8e-79  264.2   0.0    1.2  1  GSH-S_ATP       Prokaryotic glutathione synthetase, ATP-grasp
    1.2e-47  160.9   0.0    1.9e-47  160.3   0.0    1.3  1  GSH-S_N         Prokaryotic glutathione synthetase, N-termina
    6.9e-10   38.8   0.0    9.8e-10   38.3   0.0    1.2  1  RimK            RimK-like ATP-grasp domain
    7.5e-07   28.7   0.0    1.2e-06   28.0   0.0    1.3  1  ATPgrasp_YheCD  YheC/D like ATP-grasp
  ------ inclusion threshold ------
      0.045   13.8   0.0      0.063   13.3   0.0    1.4  1  ATP-grasp_3     ATP-grasp domain


Domain annotation for each model (and alignments):
>> GSH-S_ATP  Prokaryotic glutathione synthetase, ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.2   0.0   1.1e-82   3.8e-79       1     173 [.     124     296 ..     124     298 .. 0.99

  Alignments for each domain:
  == domain 1  score: 264.2 bits;  conditional E-value: 1.1e-82
                 TTGGGGGGCCCS--EEEES-HHHHHHHHHHHSSEEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SEE CS
   GSH-S_ATP   1 eKlaalsfpelipktlvskdkeeirafleeqgdvilKPldgkgGegvfrvkksdpnlksilellteegkepviaqrylpeikeGDkRillvdGepigya 99 
                 eKl++++f+el+p+tlv+++k++++af+e++gd+i+KPldg+gG+++frvk+ dpnl++i e+lte g+++++aq+ylp+ik+GDkR+l+vdGep++y+
  CTQ29919.1 124 EKLFTAWFSELTPETLVTRNKAQLKAFWEKHGDIIMKPLDGMGGASIFRVKAGDPNLGVIAETLTELGSRYCMAQNYLPAIKDGDKRVLVVDGEPVPYC 222
                 8************************************************************************************************** PP

                 EEEE--SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHHTT--EEEEEEETTEEEEEE-SS---HHHHHHH CS
   GSH-S_ATP 100 laRvpaegevRsnlaaggraeatelterdreiaeelapkLkekGllfvGlDvigdkltEinvtsPtgireieel 173
                 laR+p+ ge+R+nlaaggr+ea++lte+d+eia++++p+Lk+kGl+fvGlD+igd+ltEinvtsPt++reie++
  CTQ29919.1 223 LARIPQGGETRGNLAAGGRGEARPLTESDWEIARRVGPTLKAKGLIFVGLDIIGDRLTEINVTSPTCVREIEAA 296
                 ***********************************************************************975 PP

>> GSH-S_N  Prokaryotic glutathione synthetase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.3   0.0   5.3e-51   1.9e-47       1     119 []       2     120 ..       2     120 .. 0.99

  Alignments for each domain:
  == domain 1  score: 160.3 bits;  conditional E-value: 5.3e-51
     GSH-S_N   1 lklafvmdplesikikkDttfalmleaqarghevfvleaadLslregkatararkvevkedkedwyelgeeeelaleeldvvlmRkDPPfdmeylyaty 99 
                 +kl++vmdp+++i+ikkDt+fa++leaq+rg+e++++e++dL+l +g+a+ar+r+++v+++ ++wy+++ e++l+l++ldv+lmRkDPPfd+e++yaty
  CTQ29919.1   2 IKLGIVMDPIATINIKKDTSFAMLLEAQRRGYELHYMEMNDLYLINGEARARTRTLSVEQNYDKWYDFTGEQDLPLADLDVILMRKDPPFDTEFIYATY 100
                 5899******************************************************999999*********************************** PP

     GSH-S_N 100 lLelaeregvlvvNdpralR 119
                 +Le+ae++g+l+vN+p++lR
  CTQ29919.1 101 ILERAEEKGTLIVNKPQSLR 120
                 *******************9 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   2.7e-13   9.8e-10      18     154 ..     135     277 ..     132     310 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 2.7e-13
                 ---EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHHGGG--.....EEEEE--SS-SEEEEEEEETTEEEE.EEEEE--SS CS
        RimK  18 vpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlealkeai.....lvqeyieeaenediRvlvvddevva.alrrvskeG 110
                 +p+t ++r++ +++++ ek +    +++K + g  G  ++  k  +    v+  + +++     + q+y+   ++ d Rvlvvd+e v   l r+ + G
  CTQ29919.1 135 TPETLVTRNKAQLKAFWEKHG---DIIMKPLDGMGGASIFRVKAGDPNLGVIAETLTELgsrycMAQNYLPAIKDGDKRVLVVDGEPVPyCLARIPQGG 230
                 68999999**********996...9******************999888877775555556777*********************9775389******* PP

                 S----TTTT-EEEE----HHHHHHHHHHH...HHCT-SEEEEEEEEE CS
        RimK 111 dFRsnlhrGgvaeklqlseeekelAikaa...kamelvvaGvDllra 154
                 + R nl  Gg +e   l+e + e+A ++    ka +l+++G+D++  
  CTQ29919.1 231 ETRGNLAAGGRGEARPLTESDWEIARRVGptlKAKGLIFVGLDIIGD 277
                 *************************99873336678999****9964 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   3.3e-10   1.2e-06      25      77 ..     131     183 ..     124     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 3.3e-10
  ATPgrasp_YheCD  25 lrpyLPetellesledleemlekyksvylKpanGskGkgilriekeekellll 77 
                     ++++ Pet   +++ +l+++ ek++++++Kp +G++G  i+r++  + +l + 
      CTQ29919.1 131 FSELTPETLVTRNKAQLKAFWEKHGDIIMKPLDGMGGASIFRVKAGDPNLGVI 183
                     67889**************************************9965555554 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.8e-05     0.063       3      62 ..     124     185 ..     122     286 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.8e-05
                  SHHHHHHHHTTT.S---..........-EESS--SSSEEEEESS-------B--SS--TTE..... CS
  ATP-grasp_3   3 dKlktykkLkeagvkvP......tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaiee 62 
                  +Kl+t+ +++e    +P      +k++ + + e+   +++Kp dG+gg s++ v++++ +   i+e
   CTQ29919.1 124 EKLFTA-WFSEL---TPetlvtrNKAQLKAFWEKHGDIIMKPLDGMGGASIFRVKAGDPNLGVIAE 185
                  555443.55555...5555555578888888888999***************99998766555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2379.90
//
Query:       CTQ29920.1  [L=187]
Description: hypothetical protein CH1034_300028 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-48  165.2   0.0    1.3e-48  165.0   0.0    1.0  1  DUF179    Uncharacterized ACR, COG1678


Domain annotation for each model (and alignments):
>> DUF179  Uncharacterized ACR, COG1678
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.0   0.0   7.2e-53   1.3e-48       1     160 []      12     174 ..      12     174 .. 0.94

  Alignments for each domain:
  == domain 1  score: 165.0 bits;  conditional E-value: 7.2e-53
                 TTSTTTTSTTEEEEEEEEETTEEEEEESSSEE.EEEHHHHHHHGCTSSSST-CHHH...SEEEES-SEEEEEEEEEEES...SSSEEECSTTEEEE-SS CS
      DUF179   1 psledpnFersVvlllehdeegalGlvlNrpl.eltlkelleelleleaepatekl...ssvylGGPveqdrlfvlhsle.elessleisdglylttsl 94 
                 p+l+dp F+rsVv+++e ++ega+G+++N+pl +l+++ +le+ l++  ep+ +++   ++v+lGGP+++dr+f+lh+ + + +ss++isd++++tts+
  CTQ29920.1  12 PALQDPIFRRSVVYICEYNDEGAMGIIINKPLeNLQVEGILEK-LKIVPEPRNPEIrldKPVMLGGPLAEDRGFILHTPPsDFSSSIRISDNTVITTSR 109
                 89******************************899*******9.666667777777899*******************557999*************** PP

                 HHHHHHCSTTSCSSEEEEEEEEEECTTHHHHHHHTTSEEEEE-.HHHHHCTSTSSHHHHHHHHCCT CS
      DUF179  95 dilealagkagpeklrvflGyagWeagQLeeEieegaWlvvpassedllfetppeelWeealrrlG 160
                 d+le+l ++++p +++v+lGy++We+gQLe+Ei ++aWl++pa+++ +lf tp +++W+ea +++G
  CTQ29920.1 110 DVLETLGTDRQPGNVLVALGYSSWEKGQLEQEILDNAWLTAPADQN-ILFRTPIADRWREAAKLIG 174
                 ******99***********************************655.**************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1540.68
//
Query:       CTQ29921.1  [L=138]
Description: Holliday junction resolvase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-42  145.3   0.0    1.5e-42  145.2   0.0    1.0  1  RuvX             Holliday junction resolvase
  ------ inclusion threshold ------
      0.024   14.5   0.0      0.044   13.7   0.0    1.4  1  Erythro-docking  Erythronolide synthase, docking


Domain annotation for each model (and alignments):
>> RuvX  Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   0.0   1.7e-46   1.5e-42       2     134 ..       4     135 ..       3     136 .. 0.98

  Alignments for each domain:
  == domain 1  score: 145.2 bits;  conditional E-value: 1.7e-46
                 -EEEEEESSSEEEEEEE-S--SS---EEEEE---HHHHHHHHHHHHHHTT--EEEEE------SSS---SSTTHHHHHHHHHT..T-EEEEE--S---- CS
        RuvX   2 rilglDvGtkriGvAvsdplgilaspletierkskekdleelkelvkeeeveeiVvGlPlnldgsegesakkvrkfaeeLakrlkklpvelvDErlttv 100
                 ++lg+D+Gtk iGvAv+++ +++a+pl  ++++++++d++ +++l+ke+++e+++vGlPln+dg+e++ ++++r+fa++++ r+ ++ + l+DErl+tv
  CTQ29921.1   4 TFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMDGTEQPLTARARNFANKIHGRF-GVAILLHDERLSTV 101
                 68*******************************9*************************************************8.************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        RuvX 101 eaerilresglsrkkrkkvvDklaAviiLqsyLd 134
                 ea+  l e+g  r+ +k+ vD+++Av+iL+sy++
  CTQ29921.1 102 EARAGLFEHGGYRALNKGSVDSASAVVILESYFE 135
                 ********************************98 PP

>> Erythro-docking  Erythronolide synthase, docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   4.9e-06     0.044       5      43 ..      16      53 ..      13      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.9e-06
                     -STTHHHHHHHHHHHHHHTTSS-THHHHHHHHHHHHHHH CS
  Erythro-docking  5 dvdvGdRLDeLekaLeaLsdedGhdDvGaRLeaLLRRWn 43
                      v vG+R+    + L aL ++dG  D  + +e LL+ W+
       CTQ29921.1 16 GVAVGQRITATARPLPALKAQDGKPDW-NVIEKLLKEWQ 53
                     589***********************7.579*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 1186.58
//
Query:       CTQ29922.1  [L=217]
Description: Transcriptional regulator CsgD for 2nd curli operon [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-20   71.7   0.0    4.4e-20   71.0   0.0    1.4  1  GerE          Bacterial regulatory proteins, luxR family
      0.002   17.6   0.1     0.0054   16.3   0.1    1.7  1  HTH_24        Winged helix-turn-helix DNA-binding
     0.0055   16.3   0.0     0.0098   15.6   0.0    1.5  1  Sigma70_r4_2  Sigma-70, region 4
  ------ inclusion threshold ------
      0.019   14.8   0.0      0.038   13.8   0.0    1.5  1  HTH_23        Homeodomain-like domain
       0.15   11.9   0.1        1.1    9.1   0.0    2.2  2  HTH_10        HTH DNA binding domain


Domain annotation for each model (and alignments):
>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   1.2e-23   4.4e-20       2      57 .]     156     211 ..     155     211 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 1.2e-23
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 +L++RE+e+L  l  G +n +IA++l+iSe+TV++h+ n+++KL vk+r+++v +a
  CTQ29922.1 156 PLTERECEILNELRCGATNLDIARALFISENTVRTHLYNVFRKLSVKNRTQAVSWA 211
                 7****************************************************987 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.5e-06    0.0054       3      38 ..     159     192 ..     157     192 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.5e-06
      HTH_24   3 etdrkILelLqknprisqreLAerlglSpstvnrrl 38 
                 e + +IL++L+   + ++ ++A++l +S +tv+++l
  CTQ29922.1 159 ERECEILNELRC--GATNLDIARALFISENTVRTHL 192
                 667789999987..*******************997 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.7e-06    0.0098      26      54 .]     171     199 ..     157     199 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.7e-06
                   ---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2  26 glsykEIAellgisegtVksrlsRArkkL 54 
                   g +  +IA+ l ise+tV+++l+   +kL
    CTQ29922.1 171 GATNLDIARALFISENTVRTHLYNVFRKL 199
                   667779****************9888876 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.1e-05     0.038       8      35 ..     162     189 ..     156     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
      HTH_23   8 lrillllaeGlsvreIAreLgvsrrTvy 35 
                 ++il  l+ G++  +IAr+L +s++Tv+
  CTQ29922.1 162 CEILNELRCGATNLDIARALFISENTVR 189
                 678999999******************9 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.23   8.1e+02       1      10 [.     157     166 ..     157     167 .. 0.90
   2 ?    9.1   0.0   0.00032       1.1      26      51 ..     174     199 ..     171     201 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.23
      HTH_10   1 LTdkqlevlk 10 
                 LT+++ e+l 
  CTQ29922.1 157 LTERECEILN 166
                 9******995 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00032
      HTH_10  26 lkeLAkelGIskstlsehLrkaeskl 51 
                   ++A +l Is++t+  hL ++ +kl
  CTQ29922.1 174 NLDIARALFISENTVRTHLYNVFRKL 199
                 569*******************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1826.01
//
Query:       CTQ29923.1  [L=326]
Description: transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-41  140.2   0.0      9e-41  139.7   0.0    1.1  1  T2SSE          Type II/IV secretion system protein
    0.00016   22.1   0.3    0.00039   20.8   0.3    1.6  1  AAA_16         AAA ATPase domain
      0.001   18.8   0.0     0.0033   17.2   0.0    1.8  2  AAA_30         AAA domain
     0.0012   18.6   1.0     0.0018   18.0   0.3    1.6  2  AAA_29         P-loop containing region of AAA domain
     0.0014   18.0   0.5      0.003   17.0   0.2    1.6  2  FtsK_SpoIIIE   FtsK/SpoIIIE family
     0.0015   19.1   0.0     0.0024   18.4   0.0    1.4  1  ABC_tran       ABC transporter
     0.0027   18.0   0.0     0.0054   17.0   0.0    1.6  1  AAA_22         AAA domain
     0.0063   16.6   0.0      0.011   15.9   0.0    1.3  1  DUF87          Helicase HerA, central domain
     0.0083   16.6   0.0      0.013   16.0   0.0    1.2  1  AAA_23         AAA domain
  ------ inclusion threshold ------
      0.012   15.9   0.4      0.021   15.1   0.4    1.6  1  AAA_19         AAA domain
      0.028   13.3   0.1      0.047   12.6   0.1    1.3  1  TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-
      0.071   13.0   0.1       0.15   12.0   0.1    1.5  1  PELOTA_1       PELOTA RNA binding domain
      0.097   11.9   0.2       0.16   11.2   0.2    1.2  1  NTPase_P4      ATPase P4 of dsRNA bacteriophage phi-12
       0.15   11.6   1.0       0.31   10.6   1.0    1.6  1  AAA_25         AAA domain
       0.16   11.5   0.0       0.25   10.9   0.0    1.2  1  AAA_7          P-loop containing dynein motor region
       0.23   11.2   0.0       0.36   10.6   0.0    1.3  1  ATP_bind_1     Conserved hypothetical ATP binding protein
       0.26   10.6   0.3       0.43    9.8   0.3    1.5  1  Zeta_toxin     Zeta toxin


Domain annotation for each model (and alignments):
>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7   0.0   8.6e-44     9e-41      11     263 ..      12     257 ..       4     268 .. 0.83

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 8.6e-44
       T2SSE  11 dekvsdihvekpervkvrervdgielreveelekaalerlisriaalakldiseerplqdarlp.ekgvrlrvvllPvvagealviRkksakeltlddl 108
                 +++vsd+h+ +  + +   r ++  l++++++ ++ ++ l   + a+  l+ ++e+  +d +l+   g+rlr+++   ++g +lv+R   ++  +ld+l
  CTQ29923.1  12 KHNVSDLHLCNSAAPRW-RRQGR--LEPAPFPAPDIANLLNDWLDAAQLLH-WQEHGQIDFALTlACGARLRASAFAHTRGISLVLRLLPEQCPRLDTL 106
                 67889999988888655.45555..88999999998888888777665555.556666777777789********************66666669**** PP

       T2SSE 109 gaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks.derivtvEDpvEiqleganqvqlnak...kakvtfadllraaLRlrPDri 203
                 ga +al    +e+l++     gl+lv+G+TgsGK+t+l a++  +n++ d +i+t+EDpvE  +++ ++  ++++   +    fa++lr aLR++PD+i
  CTQ29923.1 107 GAPPAL----SELLAEE---SGLLLVTGATGSGKSTTLAAMVGHLNQHlDGHILTLEDPVEF-IHHSERCLIQQRevgRHCPSFAAALRVALRQDPDVI 197
                 *98765....5677777...9****************************************8.55666666777767777889**************** PP

       T2SSE 204 mvGEiRdketlei.lkAvnTGHlgslsTlHansaagalerLeqlgaeveaaelkssilavv 263
                 ++GE+Rd et+++ l A++TGHl+ ++TlH++ aa a+erL +     e+++++s+++  +
  CTQ29923.1 198 LLGELRDSETIRLaLTAAETGHLV-MATLHTRGAAPAVERLIDVFPAEEKDQVRSQLAGSL 257
                 ************************.******************998877888888777653 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.3   3.7e-07   0.00039      16     132 ..     112     270 ..     110     279 .. 0.61

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.7e-07
      AAA_16  16 lervrsgrpelvllsGesGvGKsslvrellralekd............ggiflrgkcdqlesaipy..salaqalareellrqllde...aesaeleaw 97 
                 l+ + + +++l+l++G+ G+GKs+ + +   +l+++            ++i  +++c   ++++ +    +a al r   lrq  d     e ++ e  
  CTQ29923.1 112 LSELLAEESGLLLVTGATGSGKSTTLAAMVGHLNQHldghiltledpvEFIHHSERCLIQQREVGRhcPSFAAAL-R-VALRQDPDVillGELRDSETI 208
                 6667778889****************9999999999875555555544333344444444444222212355555.4.555555555222122222222 PP

      AAA_16  98 rekleeala...............................avpelagaeasrllellkrllallsr 132
                 r +l    +                               + +++++++a +l+++l++ l  +++
  CTQ29923.1 209 RLAL----TaaetghlvmatlhtrgaapaverlidvfpaeEKDQVRSQLAGSLCAVLAQKLLPARQ 270
                 2222....2455577777788877777777777777777777777777777777777777755555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.1e-06    0.0033       9      49 ..     111     152 ..     109     167 .. 0.87
   2 ?   -3.8   0.0       8.2   8.6e+03     118     136 ..     288     306 ..     281     312 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.1e-06
      AAA_30   9 avealltsgdrvavltGpAGtGKttalkalreaweaa.ggrv 49 
                 a+ +ll+++  + ++tG+ G+GK+t+l+a++ +++++  g++
  CTQ29923.1 111 ALSELLAEESGLLLVTGATGSGKSTTLAAMVGHLNQHlDGHI 152
                 67788999999*******************999988766555 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 8.2
      AAA_30 118 kvilvGDerQlasVeaGgv 136
                  +i  G  +Ql+ V + g+
  CTQ29923.1 288 NLIREGKVHQLPGVMQTGM 306
                 4555566677777776555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       7.6     8e+03       2      11 ..      53      62 ..      52      70 .. 0.68
   2 !   18.0   0.3   1.7e-06    0.0018      21      42 ..     119     140 ..     113     145 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7.6
      AAA_29  2 krlqlvNWgt 11
                   ql++W++
  CTQ29923.1 53 DAAQLLHWQE 62
                5668888876 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.7e-06
      AAA_29  21 lkgatlltGpsGsGKSTllDAi 42 
                 ++g  l+tG++GsGKST l A+
  CTQ29923.1 119 ESGLLLVTGATGSGKSTTLAAM 140
                 56789************99877 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   2.8e-06     0.003      42      60 ..     123     141 ..     110     146 .. 0.88
   2 ?   -2.4   0.0       2.3   2.5e+03     174     188 ..     215     229 ..     194     284 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.8e-06
                   EEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  42 llvaGatgsGKStalntLi 60 
                   llv GatgsGKSt+l +++
    CTQ29923.1 123 LLVTGATGSGKSTTLAAMV 141
                   89***************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.3
                   ..-----------B- CS
  FtsK_SpoIIIE 174 psygvhvlvtagrel 188
                    + g+ v++t + + 
    CTQ29923.1 215 AETGHLVMATLHTRG 229
                   444444444433333 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.3e-06    0.0024      11      59 ..     120     164 ..     114     251 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.3e-06
                 TSEEEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGGB-HHHCCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  11 gekvaivGenGaGKStLlkllagllkp.teGeilldgkdlkeqeleslrk 59 
                 + ++ ++G +G+GKSt l+++ g+l++   G+il  +++++       ++
  CTQ29923.1 120 SGLLLVTGATGSGKSTTLAAMVGHLNQhLDGHILTLEDPVEF-----IHH 164
                 5677899****************9987568888555555444.....333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   5.1e-06    0.0054       4      32 ..     119     147 ..     117     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 5.1e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldee 32 
                 + g+l+vtG +G+GK+t+l+ ++  l+++
  CTQ29923.1 119 ESGLLLVTGATGSGKSTTLAAMVGHLNQH 147
                 5799****************999988765 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     1e-05     0.011      27      56 ..     124     153 ..     122     166 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1e-05
       DUF87  27 AilgsTGsGKSntvavLleellekkgatil 56 
                 ++ g TGsGKS+t a ++  l +  +++il
  CTQ29923.1 124 LVTGATGSGKSTTLAAMVGHLNQHLDGHIL 153
                 699****************99998888887 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.3e-05     0.013      18      39 ..     119     140 ..     113     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.3e-05
      AAA_23  18 skgltlItGpNGaGKTTildAi 39 
                 ++gl l+tG +G+GK+T l A+
  CTQ29923.1 119 ESGLLLVTGATGSGKSTTLAAM 140
                 689****************997 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.4     2e-05     0.021       9      38 ..     119     148 ..     113     252 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2e-05
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelg 38 
                 ++++llvt+  G+GK+++l ++v +l++  
  CTQ29923.1 119 ESGLLLVTGATGSGKSTTLAAMVGHLNQHL 148
                 67899********************99876 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   4.5e-05     0.047      14      47 ..     119     152 ..     111     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.5e-05
  TrwB_AAD_bind  14 etqhilivGttGsGKtqalekllrairargdrai 47 
                    e   +l++G+tGsGK+++l +++ ++++  d +i
     CTQ29923.1 119 ESGLLLVTGATGSGKSTTLAAMVGHLNQHLDGHI 152
                    55557899***************99999988877 PP

>> PELOTA_1  PELOTA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00014      0.15      24      64 ..     180     220 ..     167     229 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
    PELOTA_1  24 PgigEaTRvlLRRvPekvlvrdeeepdlahlllLakekgvp 64 
                 P+ + a Rv LR  P+ +l+ + ++ ++  l l a+e g  
  CTQ29923.1 180 PSFAAALRVALRQDPDVILLGELRDSETIRLALTAAETGHL 220
                 99999********************9999999999988755 PP

>> NTPase_P4  ATPase P4 of dsRNA bacteriophage phi-12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00015      0.16     110     130 ..     119     139 ..     114     144 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
                 ESEEEEEEESTTSSHHHHHHT CS
   NTPase_P4 110 lsGlvvvvGktgsGkskaLne 130
                  sGl +v+G+tgsGks +L +
  CTQ29923.1 119 ESGLLLVTGATGSGKSTTLAA 139
                 59***************9976 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.0    0.0003      0.31      29      58 ..     116     145 ..     102     241 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0003
      AAA_25  29 llpagelallaGapgtGKttlaldlalava 58 
                 l  + +l l++Ga+g+GK+t +  ++ ++ 
  CTQ29923.1 116 LAEESGLLLVTGATGSGKSTTLAAMVGHLN 145
                 566889**************9999987765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00023      0.25      25      58 ..     112     145 ..     101     156 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00023
       AAA_7  25 llelllknkkpvllvGptGtGKtviikdllkkld 58 
                 l ell +++  +l++G tG+GK++++  ++ +l+
  CTQ29923.1 112 LSELLAEESGLLLVTGATGSGKSTTLAAMVGHLN 145
                 567778888889999***********99998888 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00034      0.36       1      32 [.     125     155 ..     125     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00034
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNL 32 
                 v+G  GsGK+t   a++ +l++   + +++ L
  CTQ29923.1 125 VTGATGSGKSTTLAAMVGHLNQH-LDGHILTL 155
                 89*****************9987.66666666 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.3   0.00041      0.43      18      42 ..     122     146 ..     117     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00041
  Zeta_toxin  18 lillgGqpGAGKselaellkdeler 42 
                 l+l+ G++G+GKs++++++   l++
  CTQ29923.1 122 LLLVTGATGSGKSTTLAAMVGHLNQ 146
                 6899************999888763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2508.20
//
Query:       CTQ29924.1  [L=233]
Description: putative enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-31  108.2   0.4    5.3e-31  108.0   0.4    1.1  1  Ala_racemase_N  Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.4     3e-35   5.3e-31       6     218 ..       4     229 ..       1     230 [. 0.84

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 3e-35
                     HHHHHHHHHHHS.CT.........TSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHH....HHHHTTS.CSEEEEESCSTGGGHHHH CS
  Ala_racemase_N   6 lrhNlrrlrala.gp.........gaklmavvKanayghgavevaralaeggadgfgvatleEal....elreagi.tapilvlegfspeelaal 85 
                     ++hNl+++r+++ g+         ++ l+av+K+  +++ a+e a  +a  g ++fg+++++E++    + ++ag+   ++  +++ ++++ +++
      CTQ29924.1   4 IAHNLAQVRDKIsGAaarcgrapeEVTLLAVSKT--KPASAIEEAI-AA--GQRAFGENYVQEGVekinHFQQAGVsGLQWHFIGPLQSNKSRLV 93 
                     667777777766332566666788888*******..*****99999.55..49************999999*****6567777777999999*** PP

                     HHT.TEEEEESSHHHHHHHHHHHHHTTS-EEEEEEBESSSS..SSSBSCHHHHHHHHHHHHTTTEEEEEEE-S-SSTTSTS.HHHHHHHHHHHHH CS
  Ala_racemase_N  86 aey.dltvtvdsleqlealaaaareagkplrvhlkidtgmg..RlGftpeeleellealaalpglrleglmtHfasadepd.eeteaqlarfeea 176
                     ae+ ++ +tvd+l+ + +l++++ ++  pl+v+++i+++ +  ++G++ e+l+ l++++a+lp+l+l+glm ++a   e   +   a  ++++ a
      CTQ29924.1  94 AEHfGWCHTVDRLKIATRLNEQRPAHLPPLKVLIQINISDEqsKSGIPLEALDGLAAEIAELPHLELRGLMAIPAPESEYVrQ--FAVARQMAVA 186
                     **************************************99999*********************************9875532..2233333445 PP

                     HHHHHHTTGGGSEEEEESHHHHHHSG.GGTTEEEESGGGGT-S CS
  Ala_racemase_N 177 leelekaglrppvvslanSaaillaa.ahfdmvRpGialyGls 218
                      ++l+++++  +++sl++S ++ +a+ a ++mvR+G+a++G++
      CTQ29924.1 187 FARLKTRYPTVDTLSLGMSDDMEAAIaAGSTMVRIGTAIFGAR 229
                     555665557999*************7355************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1909.35
//
Query:       CTQ29925.1  [L=188]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-36  124.8  23.1      3e-21   75.6   3.7    2.6  3  YGGT      YGGT family


Domain annotation for each model (and alignments):
>> YGGT  YGGT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   3.7   1.7e-25     3e-21       2      68 ..      10      78 ..       9      80 .. 0.94
   2 ?   -1.3   0.4      0.16     3e+03      52      65 ..      85      98 ..      78     102 .. 0.64
   3 !   59.0   6.8   2.5e-20   4.6e-16       2      67 ..     101     167 ..     100     169 .. 0.88

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 1.7e-25
        YGGT  2 lllslyilllilrillsw.pnpfynpiaqflyklTePllapfRrlipggg.iDlSplvallvlqllrsl 68
                ++++ly+++++lr++++w + +fynp++qf++k T+P++ p+Rr+ip +g iD ++l+++++l +++ +
  CTQ29925.1 10 TVIELYTMVVLLRVWMQWaRCDFYNPFSQFVVKATQPIVGPLRRIIPAMGpIDSASLLVAFILCVIKAI 78
                89*********************************************7778**************9955 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.16
        YGGT 52 DlSplvallvlqll 65
                 + p++++ +l +l
  CTQ29925.1 85 TFQPIIWISALLIL 98
                46677777766555 PP

  == domain 3  score: 59.0 bits;  conditional E-value: 2.5e-20
        YGGT   2 lllslyilllilrillswpnpfynpiaqflyklTePllapfRrlip.gggiDlSplvallvlqllrs 67 
                 ++ sl++++l+l +++sw ++ ++p+  +l++l +Pll+p+R+l+p +ggiD+Sp+v++l+l+++++
  CTQ29925.1 101 TIGSLIFWVLLLMAIMSWVSQGRSPVEYVLMQLADPLLRPIRNLLPsMGGIDFSPMVLVLLLYVINM 167
                 56789*************44567888888*****************5566**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1517.68
//
Query:       CTQ29926.1  [L=96]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-26   92.4   0.2    1.6e-26   92.2   0.2    1.1  1  DUF167    Uncharacterised ACR, YggU family COG1872


Domain annotation for each model (and alignments):
>> DUF167  Uncharacterised ACR, YggU family COG1872
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.2     9e-31   1.6e-26       1      76 [.      10      81 ..      10      82 .. 0.94

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 9e-31
                EEEEEEES---SSS----....--TTTT-------TTIIIIIHHHHHHHHHHHHHS...SEEEE-S-GGGSEEEEEE CS
      DUF167  1 gvilavrvkPgakkdaig.leedaegrealkvrvaappvdGkANkalikfLakalgvpksdveivsGeksreKvvri 76
                g++l+++++P+a++d+i+ ++     +++lkv+++appvdG+AN++l+kfLak+++v+ks+v i++Ge  r+K+v+i
  CTQ29926.1 10 GLVLRLYIQPKASRDSIVgVH-----GDELKVAITAPPVDGQANAHLVKFLAKQFRVAKSQVLIEKGELGRHKQVKI 81
                579***************555.....566**********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 807.62
//
Query:       CTQ29927.1  [L=197]
Description: dITP/XTP pyrophosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-62  210.5   0.0    2.2e-62  210.3   0.0    1.0  1  Ham1p_like  Ham1 family


Domain annotation for each model (and alignments):
>> Ham1p_like  Ham1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.3   0.0   1.2e-66   2.2e-62       1     186 [.       4     192 ..       4     193 .. 0.94

  Alignments for each domain:
  == domain 1  score: 210.3 bits;  conditional E-value: 1.2e-66
                 EEEC-S-HHHHHHHHHHTTTECCCE.EECCCCEE----BSSSHHHHHHHHHHHHHH.HTS-EEEEEEEEEEGGGTTTBGGGTTTTTHTTCHHHHHHHHH CS
  Ham1p_like   1 ivfaTgNkgKlrevkeilaeellevkslkelelpeveEtqgtfeenalkKaraaae.aglpvladDsgLevdaLnglPGvysarfagegaedeenlakl 98 
                 +v+aTgN+gK+re++++l++ +l+++  +el  + +eEt+ tf ena++Kar+aa+ +glp++adDsgL+vdaL+g+PG+ysar++g +a+d++nl+kl
  CTQ29927.1   4 VVLATGNAGKVRELASLLEDFGLDIVAQTELGVDSAEETGLTFIENAILKARHAAQiTGLPAIADDSGLAVDALGGAPGIYSARYSGVDASDQQNLEKL 102
                 699***************9999999877788888888******************978***************************************** PP

                 HHHCTHTT.S--EEEEEEEEEEEET.TTTEEEEEEEEEEEEE-SS.--SSSSTTGGGEEETT-SSBTTTS.CHHHHHHSHHHHHHHHHHH CS
  Ham1p_like  99 leeleeee.edrsArfvcvlaladp.eeeeellfeGeveGeiveeprgeggfGyDpiFvpeegektfaelskeeknaiShRgkAleklle 186
                 l++l++++ ++r+A+f+cvl+++++ e+ + l+++G++ G i++++ g+ggfGyDpiF+++ ++kt aels eek aiShRg+Al+ lle
  CTQ29927.1 103 LDALKDVPdDQRQAQFHCVLVYLRHaEDPTPLVCHGSWPGVITRQAAGHGGFGYDPIFFVPSEGKTAAELSREEKSAISHRGQALKLLLE 192
                 ******777999************986666799***************************98789*********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1627.08
//
Query:       CTQ29928.1  [L=378]
Description: putative oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.4e-20   71.7   0.0    1.4e-19   71.0   0.0    1.2  1  Radical_SAM  Radical SAM superfamily
    5.4e-10   39.2   0.1    1.4e-09   37.9   0.1    1.8  1  HemN_C       HemN C-terminal domain
  ------ inclusion threshold ------
      0.077   13.1   0.0       0.11   12.6   0.0    1.2  1  Fer4_14      4Fe-4S single cluster domain
       0.09   12.6   0.1       0.22   11.4   0.1    1.7  1  TPR_1        Tetratricopeptide repeat
       0.11   12.7   3.6       0.55   10.5   0.1    3.1  3  TPR_2        Tetratricopeptide repeat
       0.19   11.7   0.0        1.5    8.9   0.0    2.1  2  HTH_45       Winged helix-turn-helix


Domain annotation for each model (and alignments):
>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   4.8e-23   1.4e-19       2     166 ..      11     179 ..      10     181 .. 0.82

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 4.8e-23
                  EEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHH.HHTT..SEEEEEESSTGGGS..TTHHHHHHHHHHTC..CCTEEEEEEECSSCHGHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx..xxxxxxxxxxxxxx..xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpetvrregrgrslsveeileevkelk.aekg..vkevilgggeplly..pdfvellerlakla..vpgiritvetngtlpdee 92 
                  ++ ++C ++C++C+++++  +++++++  v+ +l+ +++ + + +g  ++++++ggg+p+l   p ++ ll+  +++    +g +it+e+n+++++  
   CTQ29928.1  11 IHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLLNDLQADAqYAQGreIGTIFIGGGTPSLLsgPAMQTLLDGVRACLplAAGAEITMEANPGTVE-- 106
                  6889**************999999999999999999999988666668*************955455555555555559999*************6.. PP

                  HHHHHHHTT...-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  93 klerllelg...vdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleellel 166
                   ++r++++    v+r+s+g++++++   l++++r h++ee ++a +++  +g++  ++++ +++G  d+ lee l++
   CTQ29928.1 107 -ADRFVDYQragVNRISIGVQSFSEP-KLQRLGRIHGPEEAKRAARLASGLGLR--SFNLDLMHGLPDQSLEEALDD 179
                  .44444444444*************9.677777*********************..777777777778888877775 PP

>> HemN_C  HemN C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.1   4.7e-13   1.4e-09       3      64 ..     304     364 ..     302     366 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 4.7e-13
      HemN_C   3 pedrleEeiilgLRlreGldlaafeqrfgldleellaaaleklqeqGLLeldggrlrltprG 64 
                 + d  +E++++++Rl e  + a+f  ++gl+ e++ +++l+ +++qG+L+ d+++++ t+ G
  CTQ29928.1 304 EADKPFEFFMNRFRLLEAAPRAEFSRYTGLE-EAAIRPQLDAAIAQGYLQEDEQNWQITEHG 364
                 6899**************************9.8888***********************998 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.8e-05      0.11       2      89 ..      10     102 ..       9     125 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.8e-05
     Fer4_14   2 fvrlsgCnlsCkgCd.nketwksel.gkpqteelleqilkdlkkse.ikiqglvltGGePLhyenkkellklvkrlkeey...pekkiwletng 89 
                 ++ +  C  +C+ Cd n+++ k e+ +  ++++ll++  +d+++ +  +i  + + GG P    + +++++l++ ++         +i++e n 
  CTQ29928.1  10 YIHIPWCVQKCPYCDfNSHALKGEVpHDDYVQHLLNDLQADAQYAQgREIGTIFIGGGTPS-LLSGPAMQTLLDGVRACLplaAGAEITMEANP 102
                 677778*********7666666665144555666655444555444044556777789996.46999999999999988844344888888884 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   7.4e-05      0.22      17      32 ..     173     188 ..     171     190 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.4e-05
                 HHHHHHHHHHHHHHST CS
       TPR_1  17 ydeAleyyekALelnP 32 
                 ++eAl++ ++A+ lnP
  CTQ29928.1 173 LEEALDDLRQAIALNP 188
                 69*************9 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       4.6   1.4e+04       7      16 ..      48      57 ..      45      57 .. 0.74
   2 ?   10.5   0.1   0.00018      0.55      17      33 ..     173     189 ..     171     190 .. 0.91
   3 ?    1.8   0.1      0.11   3.3e+02       5      20 ..     290     305 ..     290     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.6
       TPR_2  7 lGlayyklgd 16
                +++a y++g+
  CTQ29928.1 48 QADAQYAQGR 57
                5778888886 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00018
       TPR_2  17 yeeAleafekAleldPn 33 
                 +eeAl+++++A++l+P 
  CTQ29928.1 173 LEEALDDLRQAIALNPP 189
                 69**************6 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.11
       TPR_2   5 ynlGlayyklgdyeeA 20 
                 y+ G+ ++++ d eeA
  CTQ29928.1 290 YMEGRYLERQHDVEEA 305
                 7789***********9 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.35     1e+03      28      40 ..     249     261 ..     244     263 .. 0.88
   2 ?    8.9   0.0    0.0005       1.5      39      72 ..     341     374 ..     324     377 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.35
      HTH_45  28 kanLsykllnkYL 40 
                 + nL+y ++  YL
  CTQ29928.1 249 QHNLNYWRFGDYL 261
                 57**********9 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0005
      HTH_45  39 YLdmLvekglikkskekYvlTekGlelleklkel 72 
                  Ld  + +g+++++++++++Te G+ +l++l el
  CTQ29928.1 341 QLDAAIAQGYLQEDEQNWQITEHGKLFLNSLLEL 374
                 57777899********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2994.41
//
Query:       CTQ29929.1  [L=238]
Description: conserved hypothetical protein; periplasmic protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-41  141.2   0.2    3.9e-41  141.0   0.2    1.0  1  DUF2884     Protein of unknown function (DUF2884)
  ------ inclusion threshold ------
       0.13   12.9   0.0       0.27   11.9   0.0    1.5  1  Cadherin_4  Bacterial cadherin-like domain


Domain annotation for each model (and alignments):
>> DUF2884  Protein of unknown function (DUF2884)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.0   0.2   4.4e-45   3.9e-41       1     217 [.      23     235 ..      23     238 .] 0.96

  Alignments for each domain:
  == domain 1  score: 141.0 bits;  conditional E-value: 4.4e-45
     DUF2884   1 CdVelnydvtleekkleisdagkekvqidedgqLfvdgkkveLsadqqqaleqyseeirqqvPevaelasdgvdlAsdaldevltellgedsevaeklk 99 
                 C+V  ++dv+l++++++++ + +  ++i+ dg+L+ +gk  +Lsa q++++++y++++r+++P++++ a+ +v+ +++ald+++te++g +s+   +l+
  CTQ29929.1  23 CSVTPRDDVILSPQQVQVKGE-NGDLVIKPDGNLTFNGKAYALSAAQREQAQDYQASLRSSLPWIDQGARSRVEKSRKALDKIITEQVGANSSMHGRLT 120
                 *********************.78899************************************************************************ PP

     DUF2884 100 tkldelkarvkekfykdgdklvlgaqslesldeafdkefeqeieelveesiGsilsalgsemlesegdn.....leafeqrmeklgekieeeveeqaka 193
                 ++ ++lk+++++ +++++d+l+++ +++++        + ++ ++lv++ +G+il++ ++em ++   +     l+ +  ++ +l++ i+ee+++q+++
  CTQ29929.1 121 KLDAQLKEQMNRIIERRSDGLTFHYKAIDQ--------VRADGQQLVNQAMGGILQDSINEMGAKAVLKgggnpLQGILGSLGGLQTAIQEEWKNQEAD 211
                 *****************************7........9999******************99988777777778************************* PP

     DUF2884 194 lekkaealCeslkeldaleqqLqk 217
                 ++++++++C+++ +l+  +++L  
  CTQ29929.1 212 FQQFGKDVCSRVVSLEDSRKALVG 235
                 *****************9999975 PP

>> Cadherin_4  Bacterial cadherin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     3e-05      0.27      45      72 .]      29      57 ..       8      57 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
  Cadherin_4 45 gdd.ltvtavtvagtyGtltlnadGsftY 72
                +d  l+ ++v+v g++G l++ +dG+ t+
  CTQ29929.1 29 DDViLSPQQVQVKGENGDLVIKPDGNLTF 57
                44568899999****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1939.48
//
Query:       CTQ29930.1  [L=118]
Description: hypothetical protein CH1034_300038 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-42  142.6   0.4    6.9e-42  142.4   0.4    1.0  1  DUF469    Protein with unknown function (DUF469)


Domain annotation for each model (and alignments):
>> DUF469  Protein with unknown function (DUF469)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4   0.4   3.8e-46   6.9e-42       1     101 []      17     117 ..      17     117 .. 1.00

  Alignments for each domain:
  == domain 1  score: 142.4 bits;  conditional E-value: 3.8e-46
      DUF469   1 rRlrKKlrvdeFqelgFevslklkedlseeeidalvdafi.evieanglafggsgkeeleglvclaklgsvteedreaveawlkarsevkevevseLvD 98 
                 rRlrKK+++deFqelgF+v ++++e++see+id++v+++i evie+n+laf+gsg+ ++egl+c++++g++tee+++ v++wl+ar+ +++v+ seL+D
  CTQ29930.1  17 RRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDQTVNDLIeEVIEPNKLAFDGSGYLSWEGLICMQEIGKCTEEHQAIVRKWLEARK-LEDVRTSELFD 114
                 9**************************************************************************************.*********** PP

      DUF469  99 awy 101
                 +w+
  CTQ29930.1 115 VWW 117
                 **9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.49
# Mc/sec: 720.80
//
Query:       CTQ29931.1  [L=239]
Description: tRNA (m7G46) methyltransferase, SAM-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-62  207.8   0.0    9.6e-62  207.5   0.0    1.1  1  Methyltransf_4   Putative methyltransferase
    0.00059   20.5   0.0     0.0012   19.5   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.025   13.8   0.0       0.03   13.5   0.0    1.2  1  Methyltransf_3   O-methyltransferase
       0.13   13.3   0.0       0.25   12.4   0.0    1.5  1  Methyltransf_24  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.5   0.0   2.1e-65   9.6e-62       2     173 .]      64     233 ..      63     233 .. 0.99

  Alignments for each domain:
  == domain 1  score: 207.5 bits;  conditional E-value: 2.1e-65
                     -EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS-TTSEEEEEEES-----SGGGGGGSTTS CS
  Methyltransf_4   2 apvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllelledgslekifilFPDPwfKkrhhKrRllq 96 
                     apv+leiG+G+G +lva+Ak++P++nflGiE+++++v ++l+++e+++++Nlr++++da++vl+++++d+sl++++++FPDPw+K+rh+KrR++q
      CTQ29931.1  64 APVTLEIGFGMGASLVAMAKAKPEQNFLGIEVHSPGVGACLASAEEEGVQNLRVMCHDAVEVLHTMIPDNSLNMVQLFFPDPWHKARHNKRRIVQ 158
                     79********************************************************************************************* PP

                     HHHHHHHHHHEEEEEEEEEEESHHHHHHHHHHHHHCSTTEEESSCCCSCCTCHCHHCCCSSTTCCCCCCTTSS-EEE CS
  Methyltransf_4  97 pellkelarvLkkgGvlelaTDveeyaeemlkvleeeplferlskeeeleeeplsvlriatkyeqkvqskgkeiyel 173
                     p + + ++++Lk gGv+++aTD+e ya +ml+v+++ + + + s ++++ ++p    r++tk+eq+ +++g+ +++l
      CTQ29931.1 159 PPFAELVKSKLKLGGVFHMATDWEAYAVHMLEVMSSLEGYRNQSASNDYVPRPE--SRPVTKFEQRGHRLGHGVWDL 233
                     ***************************************************999..9*****************985 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.6e-07    0.0012       2      73 ..      68     143 ..      67     167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 2.6e-07
                      EEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCG.BS..SSTTTEEEEEEEST CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaed.lp..fedgsfDlvvssga 73 
                      L++G G G  + a+ak+ ++++++g+++ +  + a+ + aeeeg+ n++++++da + l+   +d+s ++v +++ 
       CTQ29931.1  68 LEIGFGMGASLVAMAKAKPEQNFLGIEVHSPGVGACLASAEEEGVqNLRVMCHDAVEvLHtmIPDNSLNMVQLFFP 143
                      89***************779***********************************552443369999999988654 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.6e-06      0.03      47     130 ..      63     144 ..      30     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.6e-06
                     T--EEEEE--TTSHHHHHHHTTS-TT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHHHHHHTSSS---EEEEEE- CS
  Methyltransf_3  47 nakrvleiGvftGyslLatalalPeDGkilaididreayeialkfiqkagvaekieliegdalkvLeelvkdkklpefDfifvD 130
                     +a  +leiG   G sl+a+a a Pe  + l i++    +   l   +  gv++ + ++  da++vL+ ++ d++l+   + f D
      CTQ29931.1  63 DAPVTLEIGFGMGASLVAMAKAKPEQ-NFLGIEVHSPGVGACLASAEEEGVQN-LRVMCHDAVEVLHTMIPDNSLNMVQLFFPD 144
                     57789*******************97.6899*******************975.899999************998888888876 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   5.5e-05      0.25       1     101 [.      68     175 ..      68     178 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.5e-05
  Methyltransf_24   1 vEiGvysGvstlwllralrrngagrlvavdhdpgaeeaaalare..aglddrvrlikadseealasla....agsiDllfiDgghaaeavledl 88 
                      +EiG   G s +++++a  + +    + ++ +     ++a +++  ++  +++r+++ d+ e+l+++        + l+f D  h+a++ ++ +
       CTQ29931.1  68 LEIGFGMGASLVAMAKAKPEQN---FLGIEVHS--PGVGACLASaeEEGVQNLRVMCHDAVEVLHTMIpdnsLNMVQLFFPDPWHKARHNKRRI 156
                      7***999999999998877776...68888654..24555555444566677************988876666678999999999997766554 PP

  Methyltransf_24  89 ......eallprlapggvv 101
                            e++  +l+ ggv+
       CTQ29931.1 157 vqppfaELVKSKLKLGGVF 175
                      3333336666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1752.34
//
Query:       CTQ29932.1  [L=352]
Description: adenine DNA glycosylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-24   83.7   0.1    1.4e-23   82.9   0.1    1.4  1  NUDIX_4        NUDIX domain
      3e-22   79.1   0.0    4.9e-22   78.4   0.0    1.3  1  HhH-GPD        HhH-GPD superfamily base excision DNA repair p
    5.9e-09   35.3   0.0    1.2e-08   34.4   0.0    1.5  1  HHH            Helix-hairpin-helix motif
      4e-05   23.8   4.5    7.5e-05   22.9   4.5    1.5  1  EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
  ------ inclusion threshold ------
       0.18   12.2   0.0       0.35   11.3   0.0    1.4  1  HHH_8          Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> NUDIX_4  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.1     4e-27   1.4e-23       2     110 .]     236     345 ..     235     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 4e-27
                 EEEEEEC.TEEEEEE--TTSSSTT-EE-SEEE-TTS-.HHHHHHHHHHS-.EEEEEEEEEEEEEETTEEEEEE.EEEEEEE..S..---.EEEEEEGGG CS
     NUDIX_4   2 vllirdd.grvllekRpekgllggLwefPggeeegee.leealareelgi.eveelepgtvkHvftHfrltlt.vylvrve.egeeapa.elrwvtpee 94 
                 ++l++++ ++v+l +Rp+ gl+ggL++fP+  +++e+ l+e+la+++++  + ++l++++  H+f+Hf+l++  ++ ++v   g+++++ +  w+++++
  CTQ29932.1 236 YFLLMQHgDEVFLSQRPPVGLWGGLFCFPQ--FADEAeLREWLAQRQIKAdNLTQLTAFR--HTFSHFHLDIVpMW-LTVHsSGACMDEgNALWYNLAQ 329
                 678888879********************9..888887889**98787753444676677..***********998.544436777766889******* PP

                 GGGS---CCCHCCHHH CS
     NUDIX_4  95 leeyalptavrkllea 110
                 +  ++l+++v++ll++
  CTQ29932.1 330 PPSVGLAAPVERLLQQ 345
                 *************985 PP

>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   1.4e-25   4.9e-22       2     105 ..      38     169 ..      37     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 1.4e-25
                 HHHHHTTS-HHHHHHHHHHHHHHHSHCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH.................................S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................x RF
     HhH-GPD   2 sailsqqtsderanriierlferfgfptpedladadeekLrelirelGfyrrKakyikelArilv.................................g 67 
                 s+++ qqt++ ++ +++er+++r  fpt+ dla+a+ +++ +l+++lG+y  +a++++++A++++                                 g
  CTQ29932.1  38 SEVMLQQTQVTTVIPYFERFMAR--FPTVVDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQQVAtlhggefprtfdevaalpgvgrstagailslslG 133
                 899********************..8************************.*********************************************987 PP

                 -SSS--TTSHHHHHHHHHHTTSSSSTTHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  68 kpdvlivvDvhvrrilkrlrsikekktkkkvekkleel 105
                   +  ++ D +v+r+l r+++++ ++ kk+vek+l+++
  CTQ29932.1 134 --QHYPILDGNVKRVLARCYAVSGWPGKKEVEKRLWDI 169
                 ..579*****************************9976 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.4e-12   1.2e-08       2      29 ..     102     129 ..     101     130 .. 0.96

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3.4e-12
                 HHHHHTSSHHHHHTSTT-SHHHHHHHHH CS
         HHH   2 leglipasreeLlalPGVGpktAeaIls 29 
                 ++g++p++++e +alPGVG++tA+aIls
  CTQ29932.1 102 HGGEFPRTFDEVAALPGVGRSTAGAILS 129
                 789***********************98 PP

>> EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   4.5   2.1e-08   7.5e-05       1      17 []     194     210 ..     194     210 .. 0.98

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 2.1e-08
  EndIII_4Fe-2S   1 CTARkPkCeaCPLaDlC 17 
                    CT  kPkCe CPL++ C
     CTQ29932.1 194 CTRSKPKCELCPLSNGC 210
                    ***************99 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.7e-05      0.35      24      63 ..      87     127 ..      73     130 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.7e-05
                 CHHHHHHHHCCCCC-SS.-HHHH.TTHCTTSTT--HHHHHHH CS
       HHH_8  24 rvraYrrAaraiealpe.eitsl.eeeltklpgiGkkiaaki 63 
                 r+r+ ++Aa+ ++ l   e     +e + +lpg+G ++a  i
  CTQ29932.1  87 RARNLHKAAQQVATLHGgEFPRTfDE-VAALPGVGRSTAGAI 127
                 88888999999999988899998888.************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.49
# Mc/sec: 2167.22
//
Query:       CTQ29933.1  [L=91]
Description: protein that protects iron-sulfur proteins against oxidative damage [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-40  136.9   0.4    1.5e-40  136.8   0.4    1.0  1  Iron_traffic  Bacterial Fe(2+) trafficking
  ------ inclusion threshold ------
      0.031   14.1   0.1      0.042   13.7   0.1    1.2  1  DUF5412       Family of unknown function (DUF5412)


Domain annotation for each model (and alignments):
>> Iron_traffic  Bacterial Fe(2+) trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   0.4   1.7e-44   1.5e-40       1      88 []       1      88 [.       1      88 [. 0.99

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 1.7e-44
  Iron_traffic  1 martvfcvklkkeaegLdfpplpgelGkrifenvskeawqeWlkkqtmLiNekrLnladpkarkfLeeqmekflfgegaekpegyvpp 88
                  m+rt+fc+ l++ea+g df+++pgelGkri++++skeaw++W++kqtmLiNek+L++++p++rk+Le++m +flf++++ ++egy+pp
    CTQ29933.1  1 MSRTIFCTFLQREADGQDFQLYPGELGKRIYNEISKEAWAQWQHKQTMLINEKKLSMMNPEHRKLLEQEMVQFLFEGKDVHIEGYTPP 88
                  9*************************************************************************************97 PP

>> DUF5412  Family of unknown function (DUF5412)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   4.7e-06     0.042      78     109 ..      28      58 ..      23      63 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.7e-06
     DUF5412  78 kniYwnyreedakieWldektvvIngkkLnvk 109
                 k iY +  +++a ++W+ ++t+ In+kkL + 
  CTQ29933.1  28 KRIYNE-ISKEAWAQWQHKQTMLINEKKLSMM 58 
                 667754.5678999***************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 689.35
//
Query:       CTQ29934.1  [L=361]
Description: membrane-bound lytic murein transglycosylase C [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-68  230.1   0.0    1.5e-68  229.7   0.0    1.2  1  Mltc_N         Membrane-bound lytic murein transglycosylase C
    9.2e-32  109.2   0.1      2e-31  108.1   0.1    1.6  1  SLT            Transglycosylase SLT domain
     0.0006   19.5   0.1      0.015   15.0   0.1    2.3  1  Lysozyme_like  Lysozyme-like
     0.0013   18.1   0.0     0.0023   17.2   0.0    1.4  1  SLT_2          Transglycosylase SLT domain


Domain annotation for each model (and alignments):
>> Mltc_N  Membrane-bound lytic murein transglycosylase C, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.7   0.0   3.3e-72   1.5e-68       2     163 .]      33     193 ..      32     193 .. 0.99

  Alignments for each domain:
  == domain 1  score: 229.7 bits;  conditional E-value: 3.3e-72
                 XSHHHHH..HHHHHHHHHHHHHHH-GGG----BTTEEEEEETTTTEEEEEETTTTEEEEEE--SSSHHHHHHHHHHHHHHBBS-GGG--TTSSS.---B CS
      Mltc_N   2 akdtkalakdilvaqlskniekiWgkeevlvaskkkyvkytdnyksraeidFdkgiitvetlakkepkesLknAivttLLlpddpskvDlysdk.evkl 99 
                 +kdt+ +  dil++q+++nie+iWg +evl+a++k+yvkytd+y++r++i+Fd+g+itvet+a ++p+ +L++Aiv+tLL++ddp+++Dlysd  ++++
  CTQ29934.1  33 VKDTNGF--DILMGQFAHNIENIWGYNEVLLAGPKDYVKYTDQYQTRSHINFDEGTITVETIAGTDPRGRLRQAIVKTLLMGDDPNSIDLYSDVdDIQI 129
                 689****..************************************************************************************99**** PP

                 -SSBTTBTTBB-TTS-B--SHHHHHHHHHHHHHHSEEEEESSSSEEEEEEEE--TTHHHHHHHT CS
      Mltc_N 100 sgkPfLygqvlDqegkpiryewrAnryAdYLiknklktrkknekkvyyveiklvanhlekrakk 163
                 s++PfLygqv+D++g +ir+ewrA r+AdYL++++lk+r+++ + vy+++i+lv+nhl+kra+k
  CTQ29934.1 130 SKEPFLYGQVVDNTGASIRWEWRAARFADYLLQTRLKSRNNGLRVVYSITINLVPNHLDKRAHK 193
                 **************************************************************98 PP

>> SLT  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.1   4.4e-35     2e-31       3     113 ..     198     320 ..     196     324 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 4.4e-35
                 HHHHHHHHTS-HHHHHHHHHHHHTT-TT-B-TTSEBTTTTBETTTHHHHHHHHT.....-SHHHHCSHHHHHHHHHHHHHHHHHTTTT.......HHHH CS
         SLT   3 iikaekkygvepsllaaiaqvESgfnpkAvsksgavGLmQimpstakrlglrvk.....lsedelldPeknisagakyLkslykqyng.......slll 89 
                 +++a++kygv++sl++ai+q+ES+fnp+Avs + a+GLmQ++++ a+r+++r +     +s++ l+dP++ni++g++yL+ l++ y         ++++
  CTQ29934.1 198 VRQASRKYGVDESLILAIMQTESSFNPYAVSHADAMGLMQVVQHSAGRDVFRSQgksglPSRSYLFDPANNIDTGTAYLAMLNNVYLAgidnptsRRYA 296
                 7899************************************************999********************************99********** PP

                 HHHHHHH-HHHHHHTTHSSHHHHH CS
         SLT  90 alaAYNaGegtvkkakkevkkkek 113
                 +++AYN G+g v + ++++k ++ 
  CTQ29934.1 297 VITAYNGGAGSVLRVFSSDKVQAA 320
                 ***************999987765 PP

>> Lysozyme_like  Lysozyme-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   3.3e-06     0.015       3     105 ..     190     315 ..     188     358 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.3e-06
  Lysozyme_like   3 evleykplvekeakeqdieeyvelilaiimqEskG.....kgeD...vMQssEslglk.............eneikdpeeSikqGvkylae..ale 75 
                    +  +y  +v++  ++++++e  +lilai+++Es+       ++D   +MQ    + +              +  + dp + i +G  yla+  ++ 
     CTQ29934.1 190 RAHKYLGMVRQASRKYGVDE--SLILAIMQTESSFnpyavSHADamgLMQVVQHSAGRdvfrsqgksglpsRSYLFDPANNIDTGTAYLAMlnNVY 283
                    5678999***********87..79*********976666644551114565555544467788888888888889999999999999988522455 PP

  Lysozyme_like  76 kakekgv..dletavQaYNfGkgYidyvakng 105
                     a+  ++  +  +++ aYN G+g +  v +++
     CTQ29934.1 284 LAGIDNPtsRRYAVITAYNGGAGSVLRVFSSD 315
                    66666666677788999999988666555555 PP

>> SLT_2  Transglycosylase SLT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.1e-07    0.0023      71     108 ..     192     229 ..     188     256 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.1e-07
       SLT_2  71 kehaallariekeyGVpaeiivAiwgvEtryGkntgkf 108
                 +++  + ++++++yGV++++i+Ai+  E+++  +  ++
  CTQ29934.1 192 HKYLGMVRQASRKYGVDESLILAIMQTESSFNPYAVSH 229
                 56777899**********************98776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2518.92
//
Query:       CTQ29935.1  [L=417]
Description: nucleoside transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.2e-179  596.6  34.3   2.5e-179  596.4  34.3    1.0  1  Nuc_H_symport  Nucleoside H+ symporter
    4.8e-22   78.4  32.5    3.4e-21   75.5  32.5    1.9  1  MFS_1_like     MFS_1 like family
    3.6e-14   52.5  65.4      1e-09   37.8  15.5    2.7  2  MFS_1          Major Facilitator Superfamily
    0.00093   18.1  31.0     0.0023   16.8  31.0    1.8  1  LacY_symp      LacY proton/sugar symporter


Domain annotation for each model (and alignments):
>> Nuc_H_symport  Nucleoside H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  596.4  34.3  5.6e-183  2.5e-179       1     399 [.       1     406 [.       1     407 [. 1.00

  Alignments for each domain:
  == domain 1  score: 596.4 bits;  conditional E-value: 5.6e-183
  Nuc_H_symport   1 mklslrLkvlsflqyfiWGaWlvklfsylsktl.faaaeiglvysslgiaailspilvgiiaDkflsaervlavlhligavvlflaaqvtefealf 95 
                    m+l+l+Lk+lsflq+++WG+Wl++l+sy+++tl f++a ig+vysslgiaa+l+p+l+gi+aDk++sa++v+a++hl+ga++l+laaqvt++  +f
     CTQ29935.1   1 MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLkFDGAAIGAVYSSLGIAAVLMPTLLGIVADKWISAKWVYAICHLVGALTLYLAAQVTTPGEMF 96 
                    99********************************************************************************************** PP

  Nuc_H_symport  96 lvlLvyslaymPtlaltnsiafanlr....DvvtdfprirvlGtvGfilaslaflllvvsladlelsrlqlliaagvslllavyaltLPkiP.akk 186
                    lv+L++slaymPtl+l+n+i++++l+    D+vtdfp+ir++Gt+Gfila     ++ vs++++els++ql+i+a++s+ll++++ltLP+iP a+ 
     CTQ29935.1  97 LVILLNSLAYMPTLGLINTISYYRLQsaglDIVTDFPPIRIWGTIGFILA-----MWGVSFSGFELSHMQLYIGATLSVLLTLFTLTLPHIPvANA 187
                    **************************************************.....***************************************** PP

  Nuc_H_symport 187 kakqslkkllgldafvLlknkrllvfflvslllavvlqiyyvfanafLtevak.......ivvklasillslsqvaeilfiLtlpfflkrfGikkv 275
                    + +qs++++lgl+af+L+knkr+++ff++s++l+++lqi+++f+n+fL++++k       ++v++as+l+s+sq++e+lfiLt+pffl+r+Gik+v
     CTQ29935.1 188 QRNQSWTEMLGLNAFALFKNKRMAIFFIFSMMLGAELQITNMFGNTFLHSFDKdplfagsFIVEHASVLMSISQISETLFILTIPFFLSRYGIKNV 283
                    ************************************************************************************************ PP

  Nuc_H_symport 276 lllslvaaalrfalfaygaddepvgvvlllLslivyGvaydffyitayvfvdkevpkdirasaqGlflllvnGvGallgsilsgalvemftvdgvv 371
                    +l+s+va++lrf+lfa+g d++p+g+vll+Ls+ivyG+a+dff+i+++vfv+kev ++irasaqG+fl+++nG+G++lg+++sg++ve ftv+g++
     CTQ29935.1 284 MLISIVAWMLRFGLFAFG-DPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVEKEVRPEIRASAQGMFLMMTNGFGCILGGMVSGKVVEHFTVEGIT 378
                    ******************.***************************************************************************** PP

  Nuc_H_symport 372 dwqtlwlvfaamalvlavlfllffkekd 399
                    dwq++wl+fa+++lvla++f+++fk+k+
     CTQ29935.1 379 DWQSVWLIFAGYSLVLAFAFVALFKYKH 406
                    **************************98 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5  32.5   7.6e-25   3.4e-21       2     378 ..       5     373 ..       4     377 .. 0.84

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 7.6e-25
  MFS_1_like   2 islkilyFfffaalgsllPYltiylk.skglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklev 99 
                 ++lkil F++f   gs l  l+ y+     ++ + ig +++ l + ++l p ++g +aD+    k v +++ l+ a+++  l                 
  CTQ29935.1   5 LQLKILSFLQFCLWGSWLTTLGSYMFvTLKFDGAAIGAVYSSLGIAAVLMPTLLGIVADKWISAKWVYAICHLVGALTLY-L--AA------------- 87 
                 579**********************8789******************************************999998877.3..33............. PP

  MFS_1_like 100 svaqdvdaektfwilfllvvlasfflaailvlldaatlkelgedr....kdyGrqrlfGsvGyaifafitGil.idhysvnllpysallyvlaallvis 193
                        + +t   +fl+++l+s+   ++l l++++ +  l++      +d+  +r++G++G+++++  +++  ++ ++++l  + a l vl+ l++++
  CTQ29935.1  88 -------QVTTPGEMFLVILLNSLAYMPTLGLINTISYYRLQSAGldivTDFPPIRIWGTIGFILAMWGVSFSgFELSHMQL-YIGATLSVLLTLFTLT 178
                 .......5567777899999999999***********99996554222378**************98776654366666654.2356777777777777 PP

  MFS_1_like 194 llvvlilnetekesklkvtkslqvllnilknpeviifllvalilgmswgiienFlflYLkelgasntllGslva........lgvvaeiplfffaekll 284
                 l  + + n ++ +s +++     + ++++kn++++if+++ ++lg+   i + F + +L++ +    ++Gs+++        +  ++e  + ++    l
  CTQ29935.1 179 LPHIPVANAQRNQSWTEMLG--LNAFALFKNKRMAIFFIFSMMLGAELQITNMFGNTFLHSFDKDPLFAGSFIVehasvlmsISQISETLFILTIPFFL 275
                 77766666666666666665..5679*********************************9999999888887642211111155566667888899*** PP

  MFS_1_like 285 eklGhvklliiallayilrfllyaii....enawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlks 378
                  ++G+ ++++i+++a +lrf l a+       ++l+++  + +g++f  +  ++  +v+k + ++++a  qg++ +++ g+G  lG +++G + ++++
  CTQ29935.1 276 SRYGIKNVMLISIVAWMLRFGLFAFGdptpFGTVLLVLSMIVYGCAFDFFNISGSVFVEKEVRPEIRASAQGMFLMMTNGFGCILGGMVSGKVVEHFT 373
                 **************************76555566777778889999999999***************************************9998875 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5  41.9   1.5e-10   6.9e-07       4     344 ..      10     352 ..       7     352 .. 0.82
   2 !   37.8  15.5   2.3e-13     1e-09      34     179 ..     253     409 ..     243     416 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1.5e-10
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllllfa.sslw.lllvlrvlqGlga 99 
                 + fl ++ ++  +++l +++  +l +++++ig +++  +++a+++  +lG ++d+ +++++v+ ++ l+ al+ l+l+ a  + +  ++++ +l +l++
  CTQ29935.1  10 LSFLQFCLWGSWLTTLGSYMFVTLKFDGAAIGAVYSSLGIAAVLMPTLLGIVADKwISAKWVYAICHLVGALT-LYLA-AqVTTPgEMFLVILLNSLAY 106
                 6788888888888888889999*********************************77****************.6666.3366677999999*****97 PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWrav...fyilaivsllafvlfllllpeepperkrkspkeeekgtgpap 195
                   + ++g++ +  ++  +  g+ i      + +   +g +l+ + +s  g++++    yi a +s+l+ + f l lp  p++++  ++       +  +
  CTQ29935.1 107 --MPTLGLINTISYYRLQSAGLDIVTDFPPIRIWGTIGFILAMWGVSFSGFELShmqLYIGATLSVLLTL-FTLTLPHIPVANAQRNQSWT----EMLG 198
                 ..**************9999999988888999999***************99998888888888888877.34444444444444444444....5666 PP

       MFS_1 196 lvpawkallkdpvlwillialllfffgfsg....lltllplylqevlgls.......glllaglllallalvgailallagrlsdrlgrrrrlllalll 283
                 l   +  l+k++     ++++++f++++ +    + ++  ++    ++ +        +  a++l++++++    + l + +++ r+g ++ +l+++++
  CTQ29935.1 199 LNA-FA-LFKNK----RMAIFFIFSMMLGAelqiTNMFGNTF-LHSFDKDplfagsfIVEHASVLMSISQISETLFILTIPFFLSRYGIKNVMLISIVA 290
                 666.44.55555....35555555555555334477777776.5555555899999*77888889********99999999999*************** PP

       MFS_1 284 lllaalglallavt.ssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfnta 344
                  +l + ++a+  +t   +vll+l+++++G+++ f+++s  +++ + + pe +++a+g f ++
  CTQ29935.1 291 WMLRFGLFAFGDPTpFGTVLLVLSMIVYGCAFDFFNISGSVFVEKEVRPEIRASAQGMFLMM 352
                 **********99996666666668888******************************99875 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 2.3e-13
       MFS_1  34 igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslw.l.llvlrvlqGlgagalfpagaaliadwfpkeergraigllsa 128
                 ++ l+++  +   +++l + ++  r+G + v+l++++++ l + l++f+  +++  + l+++ ++ G +  +++ +g +++ + + +e r++a g++ +
  CTQ29935.1 253 ASVLMSISQISETLFILTIPFFLSRYGIKNVMLISIVAWMLRFGLFAFGdpTPFGtVlLVLSMIVYGCAFDFFNISGSVFVEKEVRPEIRASAQGMFLM 351
                 6889999***********************************4444476655555442666777888888************************98877 PP

       MFS_1 129 .gfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepper 179
                  ++++G ilg +++g +++++       W++v++i+a+ sl+++  f++l+  ++++ 
  CTQ29935.1 352 mTNGFGCILGGMVSGKVVEHFTvegitdWQSVWLIFAGYSLVLAFAFVALFKYKHVRQ 409
                 3678899************************************997777775555444 PP

>> LacY_symp  LacY proton/sugar symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8  31.0   5.1e-07    0.0023      16     401 ..      11     405 ..       4     416 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.1e-07
   LacY_symp  16 fffyffimsayfplfpvwlkevlglsktetGivfsvislfsilfqplfGlisdklGlkkellwvislllvlfapfliyvfepllqlnilvGalv.Ggvf 113
                  f+ f +++ + + +  ++   l++ ++ +G v+s + + ++l+ +l+G++ dk    k  +++i     l++ + +y+ + +       G +    + 
  CTQ29935.1  11 SFLQFCLWGSWLTTLGSYMFVTLKFDGAAIGAVYSSLGIAAVLMPTLLGIVADKWISAK-WVYAICH---LVGALTLYLAAQVTT----PGEMFlVILL 101
                 5677888***********************************************86655.4444444...567777887654433....2333303334 PP

   LacY_symp 114 lGlvysagagaiea..yi..ekvsraskfeyGkarvfGclGyalcaslaGilfsi..dpslvfwlasgfalilllllllskpdksssakvadalGank. 205
                   l y    g+i++  y   + +  +   ++  +r++G++G+ l+  + G+ fs    +++++++++  +++l+l+ l+       +  va+a   ++ 
  CTQ29935.1 102 NSLAYMPTLGLINTisYYrlQSAGLDIVTDFPPIRIWGTIGFILA--MWGVSFSGfeLSHMQLYIGATLSVLLTLFTLTLP-----HIPVANAQRNQSw 193
                 4678888888887522431133444566799***********995..5677776311358999999999999988877665.....4556666554441 PP

   LacY_symp 206 eafslrlalelfkdrklwvfvlyvvGvas...vydvfdqqfavff.ks.lfespeaGtrvfGyvttagellnalimfiaplivnriGaknalliagvim 299
                  ++    a++lfk++++ +f ++ +   +   + ++f + f   f k  lf ++   ++    + ++ ++ ++l ++ +p+++ r G kn +li+ v  
  CTQ29935.1 194 TEMLGLNAFALFKNKRMAIFFIFSMMLGAelqITNMFGNTFLHSFdKDpLF-AGSFIVEHASVLMSISQISETLFILTIPFFLSRYGIKNVMLISIVAW 291
                 223234689*************97766550014555665554433122133.344556667788999******************************99 PP

   LacY_symp 300 svrilgsafattalevvilkllhalevplllvgvfkyitsaf.....dkrlsatifligfqlskqlaivllstlaGklydkv...G...fqtaylvlgi 387
                  +r    af   +   ++l +l ++ v  +    f  + s+f        + a+   + + +++ ++ +l  +++Gk+ ++    G   +q+++l+++ 
  CTQ29935.1 292 MLRFGLFAFGDPTPFGTVLLVLSMI-VYGCAFDFFNISGSVFvekevRPEIRASAQGMFLMMTNGFGCILGGMVSGKVVEHFtveGitdWQSVWLIFAG 389
                 9998777776544433444444444.2333334444443333111003334444444445566667777777777777666422212236677777764 PP

   LacY_symp 388 ..ivlsltlisvftls 401
                   +vl++  +++f  +
  CTQ29935.1 390 ysLVLAFAFVALFKYK 405
                 2245555666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 2979.42
//
Query:       CTQ29936.1  [L=712]
Description: ornithine decarboxylase, constitutive [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.3e-198  657.3   0.0     1e-197  656.9   0.0    1.1  1  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain
    1.2e-48  164.7   0.0    2.9e-48  163.5   0.0    1.7  1  OKR_DC_1_C       Orn/Lys/Arg decarboxylase, C-terminal domain
    4.3e-14   52.7   0.1    1.5e-13   51.0   0.0    1.9  2  OKR_DC_1_N       Orn/Lys/Arg decarboxylase, N-terminal domain
     0.0035   16.7   0.0     0.0051   16.1   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  656.9   0.0  2.3e-201    1e-197       1     417 []     101     543 ..     101     543 .. 0.99

  Alignments for each domain:
  == domain 1  score: 656.9 bits;  conditional E-value: 2.3e-201
                 -HHHHHHHHHHHH---SSSSSTTTTTCGGGGSHHHHHHHHHH-HHHHHT---TTTGGGBBTTTTBTHHHHHHHHHHHHCT-SEEEEESSHHHHHHHHHH CS
    OKR_DC_1   1 pPlykaLvkyveegkvsfavPGHqgGavfkkePagrlfydffGenllraDlsievveLgdLldheGaikeaqkyaarvfgadksyfvvnGTsssnkvvl 99 
                 pP++++L++yve+++++fa+PGHq+Ga+fkk+Pagr+fydffGen++raD+++++v+LgdLl+heG++k+aqk+aa+vf+adk+yfv+nGTs++nkvv+
  CTQ29936.1 101 PPFFNTLTQYVEMDNSTFACPGHQHGAFFKKHPAGRQFYDFFGENVFRADMCNADVKLGDLLIHEGSAKHAQKFAAKVFNADKTYFVLNGTSAANKVVT 199
                 8************************************************************************************************** PP

                 HHH--TTEEEEEESS--HHHHH.HHHHS-EEEEEE--EB-TTS-BE---GGGGSHHHHHHHHHHSTTTGS.....ESEEEEESS-TTSEEE-HHHHHHH CS
    OKR_DC_1 100 navltpgdlvlvdRNcHKSieh.alvlsgatPvylepernalgiiggidlkefeeetlkekikevpdaka.....prlavitnsTYdGvlynakeivdk 192
                 na+lt+gdlvl+dRN+HKS++h al+++gatPvyle++rn++g+iggid+++f+e++l+  i+e +++ka     +rlavi+++TYdG++yna+++vdk
  CTQ29936.1 200 NALLTRGDLVLFDRNNHKSNHHgALIQAGATPVYLEAARNPFGFIGGIDERCFDEHYLRDLIREAAPEKAnasrpFRLAVIQLGTYDGTVYNARQVVDK 298
                 *************************************************************************************************** PP

                 HTTSESEEEEE-TT-TTGGGSGGGTTSSSSSSS.-BTTBEEEEEEEHCCCCS--TT-EEEEEES-BT......--HHHHHHHHHHTS-SS--HHHHHHH CS
    OKR_DC_1 193 leklsdrilfDeAwvgyeqfiplyadaskllae.nendpgilvtqSvHKllaalsqaSlihvkeeli......vneerlneafmmhattSpsYpllAsl 284
                 +++l+d+ilfD+Awvgyeqfip++ad+s+ll+e   +dpgi+vtqSvHK++a++sq+S+ih+k+++       ++++rln+afm+ha+tSp+Ypl+A+l
  CTQ29936.1 299 IGHLCDYILFDSAWVGYEQFIPMMADCSPLLLElTPDDPGIFVTQSVHKQQAGFSQTSQIHKKDNHLrgqarfCPHKRLNNAFMLHASTSPFYPLFAAL 397
                 *********************************99******************************9999****************************** PP

                 HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSS---EESS-SEEESTS..............GEEE-TT-TTT--TT--TTSEEE-TTEEEEE-SS CS
    OKR_DC_1 285 dvaakmlegesgrrlleevveraielrkeikrldnaelikpvnpevvdeke..............ffklepgekWhgfediadeqyflDPiKlliltPG 369
                 dv+ak++egesgrrl++e+v  +ie+rk+i   +n+++i+p++p+vv ++               ff++ep+++Whgfe++ad+qyf+DP+Kll++tPG
  CTQ29936.1 398 DVNAKIHEGESGRRLWAECVALGIEARKAI--IANCKMIQPFIPPVVAGRPwqdhpteaiarerrFFSFEPDARWHGFEGYADDQYFVDPCKLLLTTPG 494
                 ******************************..****************9999*********************************************** PP

                 B-.TTSSB-SS---HHHHHHHHHHTT---SEEESSEEEEE--TTS-HHH CS
    OKR_DC_1 370 id.edGeleelGvpaaivakyLrengivvektdlynilflltlgedktk 417
                 id e+Ge++e+G+pa+i+a+yLrengiv+ek+dl++ilfllt++e+ +k
  CTQ29936.1 495 IDaESGEYSEFGIPATILAHYLRENGIVPEKCDLNSILFLLTPAESAEK 543
                 ********************************************99875 PP

>> OKR_DC_1_C  Orn/Lys/Arg decarboxylase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   0.0   6.5e-52   2.9e-48       1     131 [.     568     697 ..     568     698 .. 0.99

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 6.5e-52
                 SHHHHHHSHHHHTT-BHHHHHHHHHHHHHHHTHHHHHHHHCCS..--EESS-HHHHHHHHHTT-EEEEEGGG-TTSBBSS-BEECTT-S-SB-TTEE-- CS
  OKR_DC_1_C   1 lPelvkekperYegmtlrdLcqemhdlykeakvaelqkeafsk..lpepamtpaeayeelvrgevelvpldelegriaaelvlpyPpGipllvpGErlg 97 
                 lP++++++p rY+++tlr+Lcqemhdly + +v++lqke+f+k  +p+++m+p++a++e++rg+velv+l+e+egr+aae++lpyPpG++++vpGE + 
  CTQ29936.1 568 LPTIYNKYPVRYRDYTLRELCQEMHDLYVSFDVKSLQKEMFRKrsFPRVVMNPQDANHEFIRGNVELVRLSEAEGRVAAEGALPYPPGVLCVVPGEVW- 665
                 8*****************************************999*****************************************************. PP

                 CCCHHHHHHHHHHHHHCCCSTTS--EEETEEE.T CS
  OKR_DC_1_C  98 eeskaildYlkaleefdnkfPGFeteiqGvevee 131
                    +a+l+Y++alee+ n +PGF++e+qGv+ e+
  CTQ29936.1 666 --GGAVLRYFLALEEGVNMLPGFSPELQGVYSET 697
                 ..*****************************986 PP

>> OKR_DC_1_N  Orn/Lys/Arg decarboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   3.4e-17   1.5e-13       1      87 [.       4      79 ..       4      98 .. 0.85
   2 ?   -2.4   0.0       1.3   5.9e+03      41      90 ..     416     462 ..     413     467 .. 0.76

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 3.4e-17
  OKR_DC_1_N  1 lkgaairelaealekegfevvgvtstdDllsvieqnsriaavvlsvddeaaelldeirernedlPvFllaetrtsedvpadvlreid 87
                +++aa+ el+++l+ ++++vv+++std        ++++aavv+sv+d+++++l  +r+ +++lPv+ll+e  t+ d p  v + i 
  CTQ29936.1  4 MHIAASCELVTRLS-THRRVVALDSTD--------FTDVAAVVISVADSRSGILTLLRRSGFNLPVYLLSE--TAVDKPEGVQAVIA 79
                5799**********.************........************************************..66666666655554 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
  OKR_DC_1_N  41 avvlsvddeaaelldeirernedlPvFllaetrtsedvpadvlreidgfi 90 
                 +v l ++ ++++++++ +++++ +P  ++++    +d p +++++   f+
  CTQ29936.1 416 CVALGIE-ARKAIIANCKMIQPFIPPVVAGR--PWQDHPTEAIARERRFF 462
                 6666664.77889999999999999988888..77777777777666665 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.1e-06    0.0051      33     107 ..     167     250 ..      80     296 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-06
                      HHHHHHHHHHHHTT-SEEEEES-HH.HHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTT..........T CS
  Beta_elim_lyase  33 tvnrLedavaelfgkeaalfvpqGt.aAnsillkillqrgeevivtepahihfdetgaiaelagvklrdlknkea..........G 107
                      + ++ ++ +a++f ++++ fv +Gt aAn++  ++ll rg+ v++++++h  ++   a+   ag++++ l+ +++           
       CTQ29936.1 167 SAKHAQKFAAKVFNADKTYFVLNGTsAANKVVTNALLTRGDLVLFDRNNHKSNHHG-ALI-QAGATPVYLEAARNpfgfiggideR 250
                      45677888899*************9678*******************998776643.332.3555566666655555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 5450.28
//
Query:       CTQ29937.1  [L=237]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-65  220.8  26.2    1.6e-65  220.7  26.2    1.0  1  DUF554    Protein of unknown function (DUF554)
  ------ inclusion threshold ------
        5.2    7.2  13.4        2.1    8.5   0.1    3.1  3  SPC12     Microsomal signal peptidase 12 kDa subunit (SPC12)


Domain annotation for each model (and alignments):
>> DUF554  Protein of unknown function (DUF554)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.7  26.2   1.8e-69   1.6e-65       1     219 [.       3     229 ..       3     230 .. 0.98

  Alignments for each domain:
  == domain 1  score: 220.7 bits;  conditional E-value: 1.8e-69
      DUF554   1 lGtivNvlaillGsllGlllkkrlperlqktlmqalGlvvlliGismalksenvllvilslvlGaviGelldleerlerlgealkkkvkksk....... 92 
                 +G+++N+ a+l+G++lG+ll++rlper+++++++++Gl++l+iGi  ++k +n+++++ls ++G+++Ge++++e+ +++l+++l++ ++ ++       
  CTQ29937.1   3 TGPFINASAVLVGGVLGALLSQRLPERIRTAMTSIFGLASLGIGILLVIKCANLPVMVLSTLVGTLLGEICNMEKGINTLVSKLQQLMSAKGkkkasah 101
                 699***********************************************************************************9996666889988 PP

      DUF554  93 .rfaegfvtasllfcvGamailGslqeGltgdatlLltKslLDgvtaiilasslGigvlfsalpvlvyqgaitllAgllapllteaviaeltavGglli 190
                  ++ + +v++++lfc+++++++G+++eG+tgda++L++K++LD++ta+i+a++lGi+v+++++p+l++q +++ +A +++pl+t+ ++a+++avGg+l+
  CTQ29937.1 102 eSYIQSYVAIIVLFCASGTGVFGAMREGMTGDASILIAKAFLDFFTATIFACTLGIAVAAISVPMLLIQLTLAACAAIIMPLTTPMMLADFSAVGGMLL 200
                 889************************************************************************************************ PP

      DUF554 191 laiGlnlleikkikvanllPalllavllv 219
                 +a+Gl++++ik + v+n+lPal+la++++
  CTQ29937.1 201 VATGLRICGIKMFAVVNMLPALMLAMPIS 229
                 **************************997 PP

>> SPC12  Microsomal signal peptidase 12 kDa subunit (SPC12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00023       2.1       5      47 ..      23      69 ..      22      73 .. 0.81
   2 ?   -2.8   0.1      0.79     7e+03      16      23 ..     109     116 ..     101     125 .. 0.49
   3 ?    3.7   4.7    0.0072        65      19      54 ..     147     182 ..     138     184 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00023
       SPC12  5 GQklaekllqvilvlsaviafivGyit....qdlkltlyillagvvl 47
                +Q+l e++ +++ ++++++++ +G ++     +l ++++ +l+g++l
  CTQ29937.1 23 SQRLPERIRTAMTSIFGLASLGIGILLvikcANLPVMVLSTLVGTLL 69
                7***********************98532226777777777777765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.79
       SPC12  16 ilvlsavi 23 
                 + +++ + 
  CTQ29937.1 109 VAIIVLFC 116
                 22222222 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.0072
       SPC12  19 lsaviafivGyitqdlkltlyillagvvltllvvvP 54 
                 +++++a+ +G ++  +++ ++++ ++++ ++++++P
  CTQ29937.1 147 TATIFACTLGIAVAAISVPMLLIQLTLAACAAIIMP 182
                 6899******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1808.15
//
Query:       CTQ29938.1  [L=71]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       149  (0.00831056); expected 358.6 (0.02)
Passed bias filter:                      136  (0.00758548); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 532.63
//
Query:       CTQ29939.1  [L=1346]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-06   27.3   1.2      0.012   15.6   0.0    3.5  3  NACHT     NACHT domain
     0.0017   18.6   0.0       0.29   11.4   0.0    3.4  3  AAA_22    AAA domain
     0.0044   17.6   0.2       0.16   12.5   0.0    3.0  2  AAA_18    AAA domain
  ------ inclusion threshold ------
      0.062   13.4   0.0       0.22   11.6   0.0    2.0  1  DUF87     Helicase HerA, central domain
      0.074   13.5   0.0       0.22   11.9   0.0    1.9  1  AAA       ATPase family associated with various cellular acti
       0.16   11.1   0.0       0.34   10.0   0.0    1.5  1  MCM       MCM P-loop domain


Domain annotation for each model (and alignments):
>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0011       3.2       3      32 ..      30      59 ..      28      66 .. 0.82
   2 !   15.6   0.0     4e-06     0.012      85     163 ..      73     150 ..      59     153 .. 0.81
   3 ?    0.5   0.1      0.17   5.1e+02      83     138 ..     403     462 ..     363     482 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0011
                EEEEC-TTTCHHHHHHHHHHHHCTS-SCCC CS
       NACHT  3 vilqGeaGsGKTtLlqklalawaegklpqg 32
                +++  e+G GKT L+++la+++ ++  ++ 
  CTQ29939.1 30 IVVLAEPGGGKTELMKSLAQKLNTSVFNAS 59
                567779****************99887765 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 4e-06
                 EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE........EEEE--TCCHHHHHHHHCT CS
       NACHT  85 lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdleeqleea......ivlevegfsesrrkqlvrkyf 163
                 li+D++De++++++      +++lL  l r    + +++++++r++ + ++  ++ e+       v+ +++f +++  +++ ++ 
  CTQ29939.1  73 LIIDAVDEVARIDQS----GIHKLL-ALART--STPTRVIMSSRSSEWGQASTSIFEKflgfspMVVRLREFDQNEQHAIFKHHA 150
                 9**********8888....888888.55555..455788999******996666666669999**************99998876 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.17
                 EEEEEE-STT-SS-TCH.........HHHHHCTT....TTT--EEEEEEECCCHHHHCTT CS
       NACHT  83 lLlilDglDelvtdlgqkekqpvrtlLselirkk....llpeasllltvrpralrdleeq 138
                   ++ D ++e++  l  +++ ++r l+ el+  +    +l +   llt+ p+ +++++ +
  CTQ29939.1 403 GFFTQDVVEEIKPLLTMSNEGHLRSLILELLADSpvncHLASELSLLTLNPDESEQIRTL 462
                 4577888999999999999999********998422224445556889999988887655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   9.6e-05      0.29       6      31 ..      28      53 ..      25      93 .. 0.78
   2 ?    2.9   0.0     0.042   1.3e+02      38      90 ..     673     725 ..     652     732 .. 0.83
   3 ?   -3.6   0.0       4.2   1.3e+04      39      66 ..    1152    1180 ..    1130    1203 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.6e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlleqlde 31
                +++vv +e+G GKT l++ l+++l+ 
  CTQ29939.1 28 THIVVLAEPGGGKTELMKSLAQKLNT 53
                699********************953 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.042
      AAA_22  38 erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrara 90 
                 +++  ++++l+ +t+  dl+  +l + ++ +++e++  ++l+++++q++ ++ 
  CTQ29939.1 673 RKDYKFLIDLAFKTDNVDLWASFLVNHQRYKNKEEQGPDDLRAQMRQHALSKP 725
                 566667899999999**************9999**************998775 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 4.2
      AAA_22   39 rpevv.fvtlpsstsskdllrellralgl 66  
                  ++e++ + ++ s  + + l++ +l++l++
  CTQ29939.1 1152 PDEIIqRLDCDSVVTVEGLRQLVLQELHD 1180
                  44444566777777777777777777664 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   5.5e-05      0.16       1      88 [.      30     115 ..      30     135 .. 0.73
   2 ?    1.3   0.3      0.16   4.7e+02      32     106 ..     741     813 ..     662     816 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.5e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe...aldeskrldedkldklldaleenssaleegknlvidghlaeles 88 
                 I++   pG GKt+l k L+++l+ +v   +v++  g   e+ p    a+de  r+d+   +kll + + +         ++++++ +e+ +
  CTQ29939.1  30 IVVLAEPGGGKTELMKSLAQKLNTSVFNASVFAYVGADKENSPLiidAVDEVARIDQSGIHKLLALARTSTP-----TRVIMSSRSSEWGQ 115
                 677778***************9664444444444455555555578888**********9999999999765.....66666666666554 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.16
      AAA_18  32 akenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakdikk.....vvLtaspeel 106
                   +++l + + ++  ++ kr d+++++ + ++++  s+    +k  +i+  + + +  ++ +++      + L+  +e+l
  CTQ29939.1 741 SEQEHLFWRFRHN--RSMKRHDRKRREIHARNIKFVSE----NKE-IIERGRHWGCLVRFAELVLmdpakIELEFGDEKL 813
                 3333344444444..44444444444444444444432....334.9999999999999988887777777777777766 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.5e-05      0.22      23      68 ..      27      85 ..      23     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.5e-05
       DUF87 23 trHlAilgsTGsGKSntvavLleelle.............kkgatililDpHGEYgkal 68
                + H+ +l++ G GK+ ++++L ++l               +k  + li+D+  E ++++
  CTQ29939.1 27 STHIVVLAEPGGGKTELMKSLAQKLNTsvfnasvfayvgaDKENSPLIIDAVDEVARID 85
                79***********************9888888888888776666777777777766666 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   7.3e-05      0.22       3      35 ..      32      64 ..      30     106 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
                EESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS CS
         AAA  3 lyGppGtGKTllakavakelgvefleisgsell 35
                +   pG GKT l+k++a++l++++++ s+   +
  CTQ29939.1 32 VLAEPGGGKTELMKSLAQKLNTSVFNASVFAYV 64
                6678*****************999998887666 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00011      0.34      50      88 ..      20      58 ..      10      65 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
                SSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEE CS
         MCM 50 dktklrgdinvllvgdpgtaKsqlLkyveklapravyts 88
                +   l ++ +++++++pg +K++l+k++++ ++++v+  
  CTQ29939.1 20 ETELLAASTHIVVLAEPGGGKTELMKSLAQKLNTSVFNA 58
                445678899**********************99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.87u 0.25s 00:00:01.12 Elapsed: 00:00:00.43
# Mc/sec: 9418.44
//
Query:       CTQ29940.1  [L=32]
Description: Putative membrane protein (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.8   0.2       0.13   12.7   0.2    1.0  1  HSA       HSA


Domain annotation for each model (and alignments):
>> HSA  HSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2     7e-06      0.13      10      33 ..       4      27 ..       2      30 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7e-06
                --HHHHHHHTTHHHHHHHHHHHHH CS
         HSA 10 thhdylLeeilwhakdfkeerksk 33
                 ++d+ Le+i++ +k + e+r + 
  CTQ29940.1  4 CKNDVILEHIKNYSKHIDEFRTQA 27
                599*****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 243.26
//
Query:       CTQ29941.1  [L=95]
Description: Putative membrane protein (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.069   13.2   0.2       0.14   12.3   0.1    1.6  2  Annexin   Annexin


Domain annotation for each model (and alignments):
>> Annexin  Annexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   7.7e-06      0.14      42      62 ..      22      42 ..      18      45 .. 0.90
   2 ?   -3.0   0.0      0.46   8.3e+03      42      51 ..      52      61 ..      51      63 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.7e-06
                HHSS-HHHHHHHHS-HHHHHH CS
     Annexin 42 kygkdLekdIksetsGdfekl 62
                k  kd+e+dI+s + Gd +k+
  CTQ29941.1 22 KIEKDIENDIDSNLTGDTKKA 42
                678****************97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.46
                HHSS-HHHHH CS
     Annexin 42 kygkdLekdI 51
                +y k+++ ++
  CTQ29941.1 52 EYRKSIIPVL 61
                5777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 739.53
//
Query:       CTQ29942.1  [L=161]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-08   34.5   0.0    2.8e-08   34.0   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      1e-07   32.0   0.0    3.2e-07   30.3   0.0    1.7  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.5e-05   25.2   0.0    1.9e-05   24.9   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
       0.06   13.3   0.0        0.1   12.6   0.0    1.3  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   6.3e-12   2.8e-08       4      76 .]      42     143 ..      39     143 .. 0.71

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 6.3e-12
                     EEEEEEETTEEEEEEEEEEES....................TCTEEEEE-GGGTTSSHHHHHHH.H.......TT....SEEEEEEEEETHHHHH CS
  Acetyltransf_7   4 evfVaeddgkivGfialslld....................aeitrlaVdpeyrgkGiGraLle.a.......ae....kgiileqlelnaekai 66 
                     ++fV+ dd k++ +++l+ ++                      ++rlaVd++ +g+G+GraL++ a       ae    +g+ ++   l++ +a+
      CTQ29942.1  42 RTFVCCDDAKVMAYYSLASSAvttntapgrfrrnmpdpipvVVLGRLAVDKSLHGNGVGRALVRdAglrviqvAEtigiRGMLVH--ALSD-EAR 133
                     6788888888888777777778888888777777777777666777*****************9666666554114233442222..3344.899 PP

                     HHHHHTTEEE CS
  Acetyltransf_7  67 kfYeklGFee 76 
                     +fY + GFe+
      CTQ29942.1 134 DFYLRVGFEP 143
                     ********95 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   7.1e-11   3.2e-07      15     108 ..      26     143 ..      19     149 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 7.1e-11
  Acetyltransf_10  15 efispealrerieegealllvaeeggkivGvielrdgs.....................hisllfVdpeyrgqGigkaLleav....eeeaekd 83 
                      + +++ a+++++ +g+  ++v+ ++ k++ + +l ++                       +++l+Vd++ +g+G+g+aL+ ++    ++ ae+ 
       CTQ29942.1  26 HWLKQRAMKNQV-TGASRTFVCCDDAKVMAYYSLASSAvttntapgrfrrnmpdpipvvVLGRLAVDKSLHGNGVGRALVRDAglrvIQVAETI 118
                      555666777777.666666666666666666644333334444677777777777888889*******************98621114445444 PP

  Acetyltransf_10  84 gikleltvnasp.yavpfYeklGFka 108
                      gi+  + v+a + +a++fY ++GF++
       CTQ29942.1 119 GIR-GMLVHALSdEARDFYLRVGFEP 143
                      444.999***888***********97 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   4.2e-09   1.9e-05      34     117 .]      42     141 ..      17     141 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 4.2e-09
                     EEEEEEETTEEEEEEEEEEEET..............TSTTEEEEEEEEESGGGTTSSHHHHHHHHH....HHHHHHTTESEEEEEEETTEHHHHH CS
  Acetyltransf_1  34 gllvaeedgeliGfisllkipd..............ekggvayieslaVspeyrgkGlGsaLleal....eerareegikkivlaveedndaair 110
                     +++v+++d ++ ++ sl                      +v+++ +laV+++ +g+G+G+aL++++    ++ a+  gi+  +l v++  d a+ 
      CTQ29942.1  42 RTFVCCDDAKVMAYYSLASSAVttntapgrfrrnmpDPIPVVVLGRLAVDKSLHGNGVGRALVRDAglrvIQVAETIGIRG-ML-VHALSDEARD 134
                     556666666666666333333333444444444455567899*********************98733336999999**99.88.6677789*** PP

                     HHHHTTE CS
  Acetyltransf_1 111 lYeklGF 117
                     +Y ++GF
      CTQ29942.1 135 FYLRVGF 141
                     ******9 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.3e-05       0.1      23      78 ..      84     142 ..      80     146 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
                 SEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-E...EEEEETT-HHHHHHHHHHT-E CS
        FR47  23 elgalqvlpehrrrGlgsrlvkalakeiaergktv...llvvvasNtpsirlyeklGfe 78 
                  lg l v+++  + G g+ lv+    ++++  +t+    ++v a  ++++ +y ++Gfe
  CTQ29942.1  84 VLGRLAVDKSLHGNGVGRALVRDAGLRVIQVAETIgirGMLVHALSDEARDFYLRVGFE 142
                 6999******************988887774444411234666777789*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1225.01
//
Query:       CTQ29943.1  [L=97]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-25   87.9   4.7    3.8e-25   87.6   4.7    1.0  1  DUF1778   Protein of unknown function (DUF1778)
    0.00054   19.8   1.9    0.00079   19.3   1.0    1.8  2  RHH_1     Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> DUF1778  Protein of unknown function (DUF1778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   4.7   4.3e-29   3.8e-25       2      76 ..      14      88 ..      13      91 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 4.3e-29
     DUF1778  2 LelRispeakeliqrAAalsgktltdFvleaaleaAekviedherieLseedfqafvaaLdeppkpnprLlkaar 76
                L+lRi+p +++li+rAA+++gk++tdFvleaa++aAe+++ ++++i+ +++++q+f+a+Ld+ p+pn++L+k+++
  CTQ29943.1 14 LNLRIKPAERDLIDRAAKARGKNRTDFVLEAARAAAEEALIEQRIIMADPQAYQEFLARLDQAPAPNAALRKTMQ 88
                9*************************************************************************5 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.0   8.8e-08   0.00079       3      38 ..      15      50 ..      14      58 .. 0.90
   2 ?   -3.1   0.0         1     9e+03       9      16 ..      68      75 ..      66      75 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8.8e-08
                EEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHH CS
       RHH_1  3 sirldeellerLdelarrrgrSrSelIReAlreyle 38
                ++r+   + +++d+ a++rg++r +++ eA+r++ e
  CTQ29943.1 15 NLRIKPAERDLIDRAAKARGKNRTDFVLEAARAAAE 50
                56777778899*********************9877 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1
                HHHHHHHH CS
       RHH_1  9 ellerLde 16
                e l+rLd+
  CTQ29943.1 68 EFLARLDQ 75
                55677875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 763.27
//
Query:       CTQ29944.1  [L=28]
Description: hypothetical protein CH1034_300052 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (28 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       103  (0.00574488); expected 358.6 (0.02)
Passed bias filter:                       90  (0.0050198); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.23s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 224.23
//
Query:       CTQ29945.1  [L=458]
Description: Cystathionine beta-synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-60  205.2   0.0    1.8e-60  204.9   0.0    1.1  1  PALP      Pyridoxal-phosphate dependent enzyme
    8.1e-17   61.4   0.6    5.2e-09   36.4   0.1    3.3  4  CBS       CBS domain


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.9   0.0     2e-64   1.8e-60       2     294 .]      10     303 ..       9     303 .. 0.89

  Alignments for each domain:
  == domain 1  score: 204.9 bits;  conditional E-value: 2e-64
                 GGCSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTT...TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHH CS
        PALP   2 tlgigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkeg...tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvall 97 
                 ++ ig TPl++l++l     + lflKlE+ np+gS+KdR a +++ +++++    ++ t++ea++GN+g++lA++aa  ++++++vvp+++s ek+  l
  CTQ29945.1  10 SDLIGHTPLLQLHKLD-TGPCSLFLKLENQNPGGSIKDRVALSMINEAERQgklAPGGTIIEATAGNTGLGLALIAAQKNYRLILVVPDKMSREKIFHL 107
                 6789***********8.33344*************************777779********************************************** PP

                 HHTT-EEEEE.....CCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEE CS
        PALP  98 rllGaevvev.....ggdydeavaaaaelaaegegaylvsqfdnptvieg.ygtiglEileqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigv 190
                 r+lGa+v ++     +g +   +++a++la e++ga++++qf+n ++ ++  +++++E+++ql g++da+vv+vG+Gg+++G+ a ++e+ p++++i +
  CTQ29945.1 108 RALGATVLLTrsdvnKGHPAYYQDYARRLADETPGAFYIDQFNNDANPLAhATSTAPELYQQLEGDIDAIVVGVGSGGTLGGLQAWFAEHSPKTEFILA 206
                 **********55554444555555588***********************9999********************************************* PP

                 EECTTCGGTTCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHCCTTCEEEE CS
        PALP 191 epegsdalarslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklreagelkegdrvv 289
                 +p+  + la+ +++gr+ ++   + +++g++ +      ++ l + v ++  vsd ea+ ++r+l + eg++++ s+++ l a+ lr +++ ++ +rvv
  CTQ29945.1 207 DPA-GSILADQVDTGRYGETG--SWLVEGIGED--FIPPLARL-EGVHTAFRVSDREAFHTARQLLQVEGVLAGSSTGTLLSAA-LRYCRAQSRPKRVV 298
                 ***.56677777799996655..8*******99..44444444.45556999********************************.99999999999*** PP

                 EEE-B CS
        PALP 290 viltg 294
                 +  ++
  CTQ29945.1 299 TFACD 303
                 98886 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         2   1.8e+04      27      38 ..      86      97 ..      82      98 .. 0.66
   2 ?   -1.0   0.0      0.28   2.5e+03      13      40 ..     158     184 ..     151     188 .. 0.71
   3 !   36.4   0.1   5.8e-13   5.2e-09      10      55 ..     346     390 ..     332     392 .. 0.90
   4 !   21.4   0.0   2.9e-08   0.00026       1      55 [.     401     452 ..     401     454 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2
                HHTSSEE.EEEET CS
         CBS 27 ekgvsrl.PVVde 38
                +k++ rl +VV++
  CTQ29945.1 86 QKNY-RLiLVVPD 97
                5778.66478854 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.28
                 ETTSBHHHHHHHHHHHTSSEEEE.EETTT CS
         CBS  13 ppdttleealelmrekgvsrlPV.Vdedg 40 
                 + ++t  e+ +++ e +++++ V V ++g
  CTQ29945.1 158 HATSTAPELYQQL-EGDIDAIVVgV-GSG 184
                 6778889999999.55599**5544.344 PP

  == domain 3  score: 36.4 bits;  conditional E-value: 5.8e-13
                 EEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHHH CS
         CBS  10 vtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllral 55 
                 vt+ pd+tl+ ++ +mr +++s+lPV+ edg++vGiv + Dl+r +
  CTQ29945.1 346 VTAAPDDTLAAVFTRMRLYDISQLPVL-EDGRVVGIVDEWDLIRHV 390
                 79**************8455*******.9**************987 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 2.9e-08
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHTSSEE.EEEETTTBEEEEEEHHHHHHHH CS
         CBS   1 Vgdimtrdvvtvppdttleealelmrekgvsrl.PVVdedgklvGivtlrDllral 55 
                 V++ m+r v t++  ++ +e+  ++ +   ++l  V+ ++ +++G+vt++D+l a+
  CTQ29945.1 401 VSEAMSRHVETLDKRAPESELQAIL-D---RGLvAVIADNTRFLGLVTRSDVLTAW 452
                 7899*********************.8...67745778899************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3365.06
//
Query:       CTQ29946.1  [L=382]
Description: Cystathionine beta-lyase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.1e-141  470.9   0.0   2.3e-141  470.8   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    7.6e-05   22.0   0.0    0.00019   20.7   0.0    1.6  1  Aminotran_1_2    Aminotransferase class I and II
     0.0011   18.3   0.1     0.0024   17.2   0.1    1.6  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
  ------ inclusion threshold ------
      0.018   14.0   0.0      0.025   13.5   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
      0.022   14.0   0.0      0.037   13.3   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
        9.4    6.2  10.5        2.7    8.0   2.2    2.6  2  DUF4880          Domain of unknown function (DUF4880)


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  470.8   0.0  7.8e-145  2.3e-141       2     381 ..       6     379 ..       5     380 .. 0.99

  Alignments for each domain:
  == domain 1  score: 470.8 bits;  conditional E-value: 7.8e-145
                      HHHHHTTTTCHTTTTBSS--B---SBBBESSHHHHCTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEEE CS
  Cys_Met_Meta_PP   2 TllvhagqekdeqtgavavpiyltstykfkdvdeafageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaGdeiv 95 
                      Tl vh+g+ +d ++gav++piy+tst+ +      + g+++gyeYsRsgnptr++le +ia+Le+g++++a++sG+aAi +++l+ll + +++v
       CTQ29946.1   6 TLSVHSGTFTD-SHGAVMPPIYATSTFAQP-----APGQHTGYEYSRSGNPTRHALETAIADLENGTRGYAFASGLAAI-STVLELLDKDSHLV 92 
                      999******99.7*****************.....********************************************.9************* PP

                      EESTSSHHHHHHHHHTHHH.TTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGGGT CS
  Cys_Met_Meta_PP  96 vsddlYggtqrllkkvlkk.lgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrplklg 188
                      + dd+Yggt+rll++v ++  g++v++v ++dl+ +e+ai++ t+++++Etptnpllk++D+ +ia++a+ ++++ v Dntfasp++ rpl++g
       CTQ29946.1  93 AVDDVYGGTYRLLENVRRRsAGLQVSWVKPDDLAGIEAAIRPDTRMIWVETPTNPLLKLADLSAIAAIARRHNLISVADNTFASPAIHRPLEHG 186
                      *****************9978************************************************************************* PP

                      -SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TTST CS
  Cys_Met_Meta_PP 189 aDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekvyYpglp 282
                       DivvhSaTKyl+GhsdvvaG++vv ++ el+++l +lqna+G vl+pf+++l+lrG++TL+lR+erh++nAl++Ae+Le++p+ve+v +p l+
       CTQ29946.1 187 FDIVVHSATKYLNGHSDVVAGLAVVGDNSELAEKLGYLQNAVGGVLDPFSSFLTLRGIRTLALRMERHSANALQLAEWLEQQPEVERVWFPWLA 280
                      ********************************************************************************************** PP

                      TSTTHHHHHHHSSSG-SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHH CS
  Cys_Met_Meta_PP 283 shpqhelakkqlkgaggvlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiEdvdDliaD 376
                      shp+h+la++q+   gg++s  +k++e  a++++++l+ f+laeslGgvesl+++p smthasip e+r a+g+t++liRlsvGiEd  DliaD
       CTQ29946.1 281 SHPHHQLARQQMALPGGMISVVVKGDEGYAERIISKLRWFTLAESLGGVESLVSQPFSMTHASIPLEKRLANGITPQLIRLSVGIEDPHDLIAD 374
                      ***************************99***************************************************************** PP

                      HHHHH CS
  Cys_Met_Meta_PP 377 lkqal 381
                       +qal
       CTQ29946.1 375 WQQAL 379
                      ****9 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   6.4e-08   0.00019       9     192 ..      12     176 ..       6     199 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 6.4e-08
                    SSTTSTTSS.HHHHHHHHHHHH...HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEE CS
  Aminotran_1_2   9 neylgdsgk.ptlpevakaeke...galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpd 100
                    + +++  g   ++  +  + ++   g + g ++ ++g+++  ++le+a+a++ +          +   + sG  a+  +l+ l k   +  + v+d
     CTQ29946.1  12 GTFTDSHGAvMPPIYATSTFAQpapGQHTGYEYSRSGNPT-RHALETAIADLEN--------GTRGYAFASGLAAISTVLELLDK--DSHLVAVDD 96 
                    5555555565566666666666778888888899999999.9999999999999........55589999999999998888886..666777777 PP

                    SS...-THHHHHHH.HTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTT CS
  Aminotran_1_2 101 pt...yasyknilr.lsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYag 192
                     +   y   +n+ r  +g++v  ++         dl ++e+a++        t++i+ve+p NP  ++a+l  + ++   a+++nl+ + D ++a 
     CTQ29946.1  97 VYggtYRLLENVRRrSAGLQVSWVK-------PDDLAGIEAAIRP------DTRMIWVETPTNPLLKLADLSAIAAI---ARRHNLISVADNTFAS 176
                    6411144444443313455566666.......559*********9......89***********8766666666666...***********99986 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   8.1e-07    0.0024      22     151 ..      49     178 ..      39     230 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.1e-07
                      SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEE CS
  DegT_DnrJ_EryC1  22 gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitertkaI 115
                      +p+ +++E+a+a+  +     a++sG aA+  +L+ l+ +    ++ +   + +t     ++  +   + v       d a ieaai + t+ I
       CTQ29946.1  49 NPTRHALETAIADLENGTRGYAFASGLAAISTVLELLDKD--SHLVAVDDVYGGTYRLLENVRRRSAGLQVSWVKP-DDLAGIEAAIRPDTRMI 139
                      6778899999999999999999999999999999998866..8899999999999999888887777777664332.37899**********99 PP

                      ...EEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT- CS
  DegT_DnrJ_EryC1 116 ...lpVhlyGqvadmdalkaiaakhglkvieDaAhAlGa 151
                         +p + + + ad++a+ aia++h+l+ + D   A  a
       CTQ29946.1 140 wveTPTNPLLKLADLSAIAAIARRHNLISVADNTFASPA 178
                      544578888899****************99998776665 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.3e-06     0.025     112     203 ..     113     199 ..      64     230 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.3e-06
                  HTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTT.TT CS
  Aminotran_5 112 tgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghK.ll 203
                   g++v +++       dl  +e++++++t+++ +    n +  + ++ +i+++a++++ + ++D + a + i+  + + g D+++ s+ K l+
   CTQ29946.1 113 AGLQVSWVKP-----DDLAGIEAAIRPDTRMIWVETPTNPLLKLADLSAIAAIARRHNLISVADNTFASPAIHRPL-EHGFDIVVHSATKyLN 199
                  3555555555.....4688899******************************************988888877776.579**********444 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.037     110     272 ..     124     267 ..      39     274 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
                      -HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSS..TT- CS
  Beta_elim_lyase 110 dlekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkK..dll 201
                      dl+ +eaai++      ++++i +++ +n      ++l+ l ++aaia+++++  + D      +  ++ +i + +  ++D+v+ s++K  +++
       CTQ29946.1 124 DLAGIEAAIRP------DTRMIWVETPTNP----LLKLADLSAIAAIARRHNLISVAD------NTFASPAIHRPLEHGFDIVVHSATKylNGH 201
                      46777777777......589*********5....9*****************998766......77888889999999**********977778 PP

                      -SS-EEEEE-HH....HHHHHHHH.HHHHT---S.STHHHHH..HHHHHHHHSSTTHHHHHHHHHHHHHHHHH CS
  Beta_elim_lyase 202 anvGgvlafrddeledylaerveq.rkylggglr.qagvlaaleagiraleeglaslerdhktaeqlaeklel 272
                        v + la+  d  +  lae     ++++gg l+  + +l     gir+l +    +er+ ++a qlae le+
       CTQ29946.1 202 SDVVAGLAVVGD--NSELAEKLGYlQNAVGGVLDpFSSFLTL--RGIRTLALR---MERHSANALQLAEWLEQ 267
                      887755555555..3455666655478888888844557777..777776554...88888888888887776 PP

>> DUF4880  Domain of unknown function (DUF4880)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.4     0.052   1.6e+02      22      37 ..     260     275 ..     252     276 .. 0.87
   2 ?    8.0   2.2   0.00089       2.7      26      41 ..     278     293 ..     277     294 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.052
     DUF4880  22 afqaWlaadPrHarAw 37 
                 +++ Wl++ P+ +r w
  CTQ29946.1 260 QLAEWLEQQPEVERVW 275
                 6899*******99988 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00089
     DUF4880  26 WlaadPrHarAwqrae 41 
                 Wla++P H+ A q+++
  CTQ29946.1 278 WLASHPHHQLARQQMA 293
                 ***********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2885.55
//
Query:       CTQ29947.1  [L=303]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-47  160.7   7.1    4.7e-47  160.0   7.1    1.2  1  LysR_substrate  LysR substrate binding domain
      2e-18   66.1   0.7    4.9e-18   64.8   0.7    1.7  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   7.1   5.3e-51   4.7e-47       4     208 ..      90     292 ..      88     293 .. 0.97

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 5.3e-51
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSEC CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gepvs 97 
                     ++g+Lr++ap+++++++++pl a f+++ P v++el  ++  +++dl++eg +Dlair g++++++l+ar La +++v++a+p++ Lar g+p +
      CTQ29947.1  90 PAGTLRVSAPTSFGASVIAPLTATFLQAWPAVRVELDLTN--RMVDLVDEG-FDLAIRIGEIHQEDLVARYLAPYRMVICAAPAY-LARyGTPGT 180
                     79**************************************..*********.*********************************.***99999* PP

                     GGGGCTSEEEEESTTST.HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETT CS
  LysR_substrate  98 ledLadeplilleegsg.lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkg 190
                     +edL d+ ++  +  ++ + ++l  + +e + k++++l++n+  al++++ aG G+ + p+ +++d+la+g lv ++l++++++ r+++l++r++
      CTQ29947.1 181 PEDLTDHLCLSHTVWTArNEWRLPGVEGEVRWKRDAVLRCNDGYALRQAAIAGAGLLMQPEVLLADALASGSLV-RVLEAWTPQpRPVHLLWRQD 274
                     ***********9877778999999999999********************************************.******9999********** PP

                     CCCHHHHHHHHHHHHHHH CS
  LysR_substrate 191 relspavrafidflreal 208
                     r++ p++ +fi++l++ +
      CTQ29947.1 275 RRPLPKLTQFIAHLQQGM 292
                     **************9865 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.7   5.5e-22   4.9e-18       1      60 []       4      63 ..       4      63 .. 0.98

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 5.5e-22
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                lr +++f+av+e+gsft+AA +Lgls   v + i++LE++l ++L+eR++r+ +LT+aG+
  CTQ29947.1  4 LRGMETFIAVVECGSFTGAASRLGLSAVMVGKYIAQLESQLATRLLERNTRRQSLTDAGR 63
                6789*******************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2243.76
//
Query:       CTQ29948.1  [L=200]
Description: Oxidoreductase, short chain dehydrogenase/reductase family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-16   58.8   0.0      7e-16   58.5   0.0    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    7.1e-13   48.5   0.5    1.2e-10   41.1   0.5    2.1  1  adh_short        short chain dehydrogenase
    3.7e-06   26.6   0.1    4.8e-06   26.2   0.1    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
    4.6e-06   26.7   0.2    0.00079   19.4   0.0    2.1  2  KR               KR domain
    2.5e-05   23.5   0.1    3.6e-05   23.0   0.1    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
     0.0017   18.5   2.0      0.018   15.1   0.2    2.1  2  DapB_N           Dihydrodipicolinate reductase, N-terminus
      0.005   17.1   0.3      0.037   14.3   0.2    2.1  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
  ------ inclusion threshold ------
      0.022   14.6   1.0      0.067   13.1   1.0    1.8  1  NAD_binding_10   NAD(P)H-binding
      0.097   12.0   0.4       0.16   11.3   0.0    1.5  2  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   3.5e-19     7e-16      36     180 ..      25     163 ..       7     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 3.5e-19
                   HHHHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGG CS
  adh_short_C2  36 elaeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeggsivnlssvga 131
                   e+ + + ++  +++D+t++e+veal+++    +g++D +v   g  +   gp+ ++++++f+  l+ +l + ++la   ++ +++ggsi  +s + a
    CTQ29948.1  25 EVIRVGRTRGdYQVDITSQESVEALFAQ----TGEVDAIVSTTGNLHF--GPLSTMTDSQFNLGLQDKLLGQIRLALVGQHFLRDGGSITLVSGIVA 115
                   444433344469**************98....6889************..*********************************************** PP

                   TSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGG CS
  adh_short_C2 132 ervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaas 180
                   +  +++    +++ a+le+++r++A el + giR+N +sp ++   +a+
    CTQ29948.1 116 QEPIAQGVNATTVNAGLEGFVRAAACELPR-GIRINLISPTVLSESLAA 163
                   ***999999999****************66.**********99876654 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.5   6.3e-14   1.2e-10       3     183 ..       3     158 ..       1     164 [. 0.90

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 6.3e-14
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeew 101
                 ++v+Gas+ IGra+++el ++  +v+ v+r+  +                 +qvD+t++e+veal+++     g++d++v  +G  ++gp s ++++++
  CTQ29948.1   3 IIVIGASGTIGRAVSEELSQR-HEVIRVGRTRGD-----------------YQVDITSQESVEALFAQT----GEVDAIVSTTGNLHFGPLSTMTDSQF 79 
                 789999999999999998877.777777887554.................59************9998....************************** PP

                 HHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS CS
   adh_short 102 ervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd 183
                 +  ++  l g + l+ +v +++l + +G+I  vs +++++p a+++  ++  a+++g++r++a el + gir+n + P +++
  CTQ29948.1  80 NLGLQDKLLGQIRLA-LVGQHFL-RDGGSITLVSGIVAQEPIAQGVNATTVNAGLEGFVRAAACELPR-GIRINLISPTVLS 158
                 ************996.5677777.89***************************************976.8********9865 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.1   2.4e-09   4.8e-06       1      72 [.       3      63 ..       3      98 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2.4e-09
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHH.T-SEEEE-- CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkee.qpdavihlA 72
                i+V+Ga+G iG+a+ ++l ++ +evi + r        r +    +++d+t ++++e+lf+++ ++da++   
  CTQ29948.1  3 IIVIGASGTIGRAVSEELSQR-HEVIRVGRT-------RGD----YQVDITSQESVEALFAQTgEVDAIVSTT 63
                89****************987.788888887.......222....59**********************9874 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.1    0.0063        13       4      28 ..       4      26 ..       2      37 .. 0.81
   2 !   19.4   0.0     4e-07   0.00079      58     162 ..      36     138 ..      29     152 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0063
                EEETTTSHHHHHHHHHHHHHHS-EE CS
          KR  4 litGGlGgLGlelarwlaekgarhl 28
                +++G+ G +G+++++ l +++  ++
  CTQ29948.1  4 IVIGASGTIGRAVSEELSQRH--EV 26
                89***************9976..34 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 4e-07
                 ----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHH CS
          KR  58 vaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaNa 154
                 +++D++++++veal+++      ++  ++ + g l+ ++l++mt+++++  l+ K+ G   L  + ++  ++   ++l+S i +    a+ +n ++ Na
  CTQ29948.1  36 YQVDITSQESVEALFAQTG----EVDAIVSTTGNLHFGPLSTMTDSQFNLGLQDKLLGQIRLALVGQHflRDGGSITLVSGIVAQEPIAQGVNATTVNA 130
                 589************9996....899**********************************999888877777778888888888777777788888888 PP

                 HHHHHHHH CS
          KR 155 flDalaey 162
                  l+++++ 
  CTQ29948.1 131 GLEGFVRA 138
                 88887765 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   1.8e-08   3.6e-05       1      57 [.       1      61 [.       1      64 [. 0.88

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.8e-08
                   EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT....T--TTSHHHHHHHHHHH.--SEEEE CS
  RmlD_sub_bind  1 mkilvtGanGqlGseLakqlaeeglevlaltre....eldltdaeavaellkea.kpdvvvn 57
                   mki+v+Ga+G +G+++ ++l++++ ev+ ++r+    ++d+t +e+v++l++++ + d++v+
     CTQ29948.1  1 MKIIVIGASGTIGRAVSEELSQRH-EVIRVGRTrgdyQVDITSQESVEALFAQTgEVDAIVS 61
                   89*******************998.999998888999*************988624566665 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   9.2e-06     0.018       1      28 [.       1      28 [.       1      36 [. 0.86
   2 ?    2.7   0.1     0.063   1.3e+02      69     100 ..      35      64 ..      31      67 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.2e-06
                EEEEEETTTSHHHHHHHHHHHHSTTEEE CS
      DapB_N  1 ikvavvGasGrmGkevvkaveeaedlel 28
                +k++v+GasG++G++v + ++++ ++  
  CTQ29948.1  1 MKIIVIGASGTIGRAVSEELSQRHEVIR 28
                89*****************999877655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.063
                 SEEEE-S-HHHHHHHHHHHHHTT-EEEE--SS CS
      DapB_N  69 dvliDFTtpeavlenlklalekgvklViGTTG 100
                 d  +D T+ e+v +++  a   +v++++ TTG
  CTQ29948.1  35 DYQVDITSQESVEALF--AQTGEVDAIVSTTG 64 
                 6678999888888764..4556899******9 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   1.8e-05     0.037       1      27 [.       3      27 ..       3      59 .. 0.82
   2 ?    1.1   0.0      0.22   4.3e+02      52      82 ..      36      68 ..      27      74 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.8e-05
                     EEEE--.SHHHHHHHHHHHCTCCT-GEE CS
  Sacchrp_dh_NADP  1 vliiGa.GsvGqavaellarhfdvdaei 27
                     +++iGa G +G+av e+l+++++v   i
       CTQ29948.1  3 IIVIGAsGTIGRAVSEELSQRHEV---I 27
                     89*******************987...3 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.22
                     EE--TTTHHHHHHHHHTTS...SEEEE-SSGGGH CS
  Sacchrp_dh_NADP 52 ialdaenyeavLaallkeg...dlvvnlsppiss 82
                     +++d+  +e+ ++al +++   d++v+ +++   
       CTQ29948.1 36 YQVDITSQES-VEALFAQTgevDAIVSTTGNLHF 68
                     7899999999.99998888888999999988755 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.0   3.4e-05     0.067       1      64 [.       7      59 ..       7      84 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.4e-05
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH.HHHCTTTCEEEE--TT-CCHHHHHHTT-SEE CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpekla.eleaeeglevvegdvtdvedlaealkgadaV 64
                    GA+G +Gr++ +el +r  hev  + R+  + + ++ ++e +e++ ++  +v          da+
      CTQ29948.1  7 GASGTIGRAVSEELSQR--HEVIRVGRTRGDYQvDITSQESVEALFAQTGEV----------DAI 59
                    9*************999..899999888766551244444444444333333..........333 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.9e-05      0.16      38      91 ..       2      67 ..       1      79 [. 0.78
   2 ?   -3.1   0.1       2.1   4.3e+03     133     154 ..     116     137 ..     108     140 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.9e-05
                   EEEEE---TTTHHHHHHHHHCT...........T-EEEEE-TTS.CCHHHHHCCSSEEEE-SS-TT CS
  THF_DHG_CYH_C 38 kvvvvGrsnivgkplallLlek...........natVtvchskt.kdlaeitreadivvvavGkpe 91
                   k++v+G+s ++g++++  L+++           +  V ++ +++ + l + t e d +v+ +G+ +
     CTQ29948.1  2 KIIVIGASGTIGRAVSEELSQRhevirvgrtrgDYQVDITSQESvEALFAQTGEVDAIVSTTGNLH 67
                   789******************856666666667777777777765677777778888887777765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.1
                    E--TTTSCHHHHHHHHHHHHHH CS
  THF_DHG_CYH_C 133 itPvpgGVGpmTvamllkntle 154
                      P+ +GV   Tv   l+  ++
     CTQ29948.1 116 QEPIAQGVNATTVNAGLEGFVR 137
                    4577777777777666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1481.47
//
Query:       CTQ29949.1  [L=114]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.029   14.0   0.0       0.03   14.0   0.0    1.1  1  DUF2713   Protein of unknown function (DUF2713)


Domain annotation for each model (and alignments):
>> DUF2713  Protein of unknown function (DUF2713)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.7e-06      0.03     130     173 ..      25      68 ..       4      94 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-06
     DUF2713 130 yinennesylkaqfeklsqrdmkkylgemkrladggemnfdgyl 173
                 +  e++e+y +a f  + + d +++l +m+ + +gg+ ++  y 
  CTQ29949.1  25 HYTEEDEAYYRAVFCIIDHDDSRQFLDDMQNIVEGGNSDYALYK 68 
                 567999******************************98887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 878.42
//
Query:       CTQ29950.1  [L=62]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 486.22
//
Query:       CTQ29951.1  [L=393]
Description: Aminotransferase, classes I and II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-36  124.4   0.0    7.1e-36  124.1   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    4.8e-13   48.7   0.0    9.8e-13   47.7   0.0    1.6  1  Aminotran_MocR   Alanine-glyoxylate amino-transferase
      0.001   18.4   0.0     0.0018   17.6   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
     0.0081   14.7   0.0      0.011   14.3   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.018   14.3   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
       0.11   12.4   0.0       0.16   11.9   0.0    1.4  1  MreC             rod shape-determining protein MreC
       0.13   10.9   0.0       0.69    8.5   0.0    1.8  1  Aminotran_3      Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   0.0   2.8e-39   7.1e-36      31     363 .]      57     389 ..      31     389 .. 0.85

  Alignments for each domain:
  == domain 1  score: 124.1 bits;  conditional E-value: 2.8e-39
                    HHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETT CS
  Aminotran_1_2  31 alaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplysee 126
                     + ++++ +yg ++g+p l++a+ +  + s +++  +  +v  +sG+++ ++++++ l l+pgd i+v +pty    ++++l+++ + ++ +   +
     CTQ29951.1  57 SERFNDAFQYGLTEGYPPLRQAVSEICH-SRGVACSAA-QVYITSGSQQSLDIVARTL-LDPGDTIVVERPTYLAALQVFQLAQANILSVDT---D 146
                    4788999*********************.999999999.*******************.********************************4...5 PP

                    TTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH.....HGGSTTSTTEEEEE CS
  Aminotran_1_2 127 dfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavat.....ranveeepnllivg 217
                    d ++ +e+l ++l++     k   v lv +  NP G+ ++++  + l++lakky ++++ D+ Y++  f+  dav+       +++  e+ ++ ++
     CTQ29951.1 147 DDGMLVEQLADLLETTR--VK--AVYLVPTFGNPGGKTLSEARRRRLVELAKKYDFVILEDDPYGEISFT--DAVRRplyqhAVELGCEDQVVYTS 236
                    889***********952..22..456899*****************************************..6777455554555555556***** PP

                    ESSSTTSSGGG-EEEEEEEH......HHHHHHHHHHHHHTSSHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS...TEEEECCS CS
  Aminotran_1_2 218 slsKafGlaGeRvGyilgna......avvsqlrklsrpflsssllqaava.aalsdallkqseleemrqrlqkrrkelrdeLael...glkvlasq 303
                    ++sK + ++G R+G+i+  +       +v+q+++l++++ls+ +++++++ + l+++       e+ r++  ++++ l +         l++  +q
     CTQ29951.1 237 TFSKIL-APGMRIGWIVMPDwlaqqtVIVKQAADLHTNMLSQVITAEYLSlNRLDNQIAL--IREDYRKKCVALADALES----RlgeHLEFSRPQ 325
                    ****98.6**********997777777777777777777776555555531444444333..445555555555555555....4445******** PP

                    CSSEEEEEETHH.CHHHHHHHHHHTCTEEEEEGGGGTS....TTEEEEECTTS-HHHHHHHHHHH CS
  Aminotran_1_2 304 sgmflltdlsae.takelskkLleevgvyvtpgtsftv....pgrlRitvAglteeeleelveal 363
                    +gmfl+ +++   + +e  kk le+ gv+ +pg+ f+     +  lR+++++++e+ l  +ve+l
     CTQ29951.1 326 GGMFLWARFRYPfDTMEWMKKTLEN-GVVYVPGEAFYHdkpdTRTLRLSYSTVSEAGLLTAVERL 389
                    **********889999*********.99999*********99999*****************997 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   3.8e-16   9.8e-13     126     407 ..     118     391 ..      29     393 .] 0.80

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 3.8e-16
                     EEEEEES--HHHHHHHHHHT-EEEEEEEETTEE-HHHHHHHHHC-TTEEEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTSS-B CS
  Aminotran_MocR 126 kllvtvpGydrhfllleelGielltvdlqddGpdvdaveklvaedasvkGilavpkysnptGetiseevarrlaalkaaapdfrifaddayavhd 220
                      ++v  p y   + + +    ++l+vd +ddG  v+++  l    + vk ++ vp++ np+G+t+se + rrl+ l     df i+ dd y   +
      CTQ29951.1 118 TIVVERPTYLAALQVFQLAQANILSVDTDDDGMLVEQLADLLE-TTRVKAVYLVPTFGNPGGKTLSEARRRRLVELA-KKYDFVILEDDPYGEIS 210
                     57888999999999999999*******************9985.578****************************95.578**********9877 PP

                     S.SSSS----HHHHHHHHT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHH.HHHHHC-S---HHHHHHHHHHHHHSTHHHHHHHHHHHHHH CS
  Aminotran_MocR 221 lvaeedkdanivalardaGhpdrafvlastskitfaGaGvafvassedniawlk.kylGlqsiGpdkveqlrhvkflkdyeGlealmrdhaelia 314
                     + +++ +   + + a + G  d+ +  ++ ski   G  ++ +    d +a+ +     +  +  + + q+    +l+  + l  ++   +e  +
      CTQ29951.1 211 F-TDAVRR-PLYQHAVELGCEDQVVYTSTFSKILAPGMRIGWIVMP-DWLAQQTvIVKQAADLHTNMLSQVITAEYLS-LNRLDNQIALIREDYR 301
                     6.666665.5778899999988765555559**********99865.4444443034455667777777777776664.4455555555566667 PP

                     HHHHHHHHHHHHHHTTTSSEEE---SBSS-EEEEESSS-.HHHHHHHHHHCTEE---TTTTSSTT--SSS-EEEE--SSS-HHHHHHHHHHHHH CS
  Aminotran_MocR 315 pkfeavlevleaelggaevatwteprGGyfisldtldgv.akrvvklaeeaGvsltaaGatypaGedpkdrnirlaptlppleevetamdvvat 407
                      k  a+ ++le++lg  e   ++ p+GG f+      +  + + +k + e Gv   +  a y   + p  r +rl+ ++ + + + ta++ +a+
      CTQ29951.1 302 KKCVALADALESRLG--EHLEFSRPQGGMFLWARFRYPFdTMEWMKKTLENGVVYVPGEAFYH--DKPDTRTLRLSYSTVSEAGLLTAVERLAA 391
                     777788888888886..567899*******988777776234667778888999988888775..46778888888888888878777777665 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     7e-07    0.0018      24     165 ..      62     201 ..      44     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7e-07
                      --CCCT--HHHHHHHHHHHH......HTT-SEEEEES-HHH.HHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE- CS
  Beta_elim_lyase  24 GdesYgedktvnrLedavae......lfgkeaalfvpqGta.AnsillkillqrgeevivtepahihfdetgaiaelagvklrdlknkeaGkmd 110
                      +  +Yg  +++  L +av e      ++  +a++++++G + +  i  ++ll +g+ ++v++p         ++ +la+++   +++++   m 
       CTQ29951.1  62 DAFQYGLTEGYPPLRQAVSEichsrgVACSAAQVYITSGSQqSLDIVARTLLDPGDTIVVERPTYLAAL---QVFQLAQANILSVDTDD-DGML 151
                      3337888999999999999933333322245778899997626679999*************9766544...45567888888999999.7799 PP

                      HHHHHHHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEE CS
  Beta_elim_lyase 111 lekleaaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplh 165
                      +e+l+++++       ++k+++l  T    gG+ +s +  r++ ++akky+  ++
       CTQ29951.1 152 VEQLADLLET-----TRVKAVYLVPTFGNPGGKTLSEARRRRLVELAKKYDFVIL 201
                      **********.....689********************************97665 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.3e-06     0.011      67     174 ..      92     204 ..      64     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.3e-06
                      -SEEEEESSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCT.TEEEEEE.ESS-TT...TT---- CS
  Cys_Met_Meta_PP  67 geaalavssGmaAiaaailallkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaike.ntklvyl.Etptnp...llkvvD 155
                      +++++++s  + +++ + ++ll  Gd ivv++  Y  + ++++    ++    +  d   +e+l+  ++  ++k+vyl  t +np   +l+ + 
       CTQ29951.1  92 AAQVYITSGSQQSLDIVARTLLDPGDTIVVERPTYLAALQVFQLAQANILSVDTDDDGMLVEQLADLLETtRVKAVYLvPTFGNPggkTLSEAR 185
                      4566666666788889999********************999987777544444556678899999988779****963799999333444455 PP

                      HHHHHHHHHHTT-EEEEEG CS
  Cys_Met_Meta_PP 156 iekiaklakkagvlvvvDn 174
                       +++++lakk + +++ D 
       CTQ29951.1 186 RRRLVELAKKYDFVILEDD 204
                      6678888888887766665 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   7.2e-06     0.018      58     144 ..     111     203 ..      61     206 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.2e-06
                      TTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTEEEEEEB-GGGB--..-HHH.....HHHHHHHCT-EEEEE CS
  DegT_DnrJ_EryC1  58 lgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitertkaIlpVhlyGqva..dmda.....lkaiaakhglkvieD 144
                        ++pgd+++v   t++a  ++ + + a+   vD d d+ ++  + +  + t+r ka+ +V ++G++    +++     l ++a+k++ +++eD
       CTQ29951.1 111 TLLDPGDTIVVERPTYLAALQVFQLAQANILSVDTD-DDGMLVEQLADLLETTRVKAVYLVPTFGNPGgkTLSEarrrrLVELAKKYDFVILED 203
                      44689*******************************.788888888899999999**********99654555322222778899999999988 PP

>> MreC  rod shape-determining protein MreC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.2e-05      0.16      96     142 ..     229     272 ..     137     280 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.2e-05
                 TT-EEEEE-TTSSS-CCEEEEEEEEEEE-TTSSEEEEEEEESS--SS CS
        MreC  96 kgdlvvTsglggvfpkglpvGtVekveedkeglfkkievkpavdfdk 142
                 +++ v+Ts +++++ +g+ +G ++  +     + +++ vk a+d+++
  CTQ29951.1 229 EDQVVYTSTFSKILAPGMRIGWIVMPDW---LAQQTVIVKQAADLHT 272
                 458999*****************96443...3568999999999876 PP

>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00027      0.69     174     373 ..     147     353 ..     123     360 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00027
                  HHHHHHHHHHHHHCHTCCCEEEEEE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE....-TTTTTTTTSSSSGGGGC.TS--SEE...EE-GGG CS
  Aminotran_3 174 eeaalleelealekkkkdevaAvivEpiqgegGvvvaspeflaklrelckkhdvllivD....EvqtGfGrTGklfAleha.gvspDlm...tlaKal 263
                   + +l e+l +l   ++  v Av + p  g+ G +  s++  ++l el+kk+d +++ D    E+    +    l+ ++   g +  ++   t++K l
   CTQ29951.1 147 DDGMLVEQLADLL--ETTRVKAVYLVPTFGNPGGKTLSEARRRRLVELAKKYDFVILEDdpygEISFTDAVRRPLYQHAVElGCEDQVVytsTFSKIL 242
                  5555555555554..56677777777777777777777777777777777777777777344444433222233555554444444443222899*** PP

                  GTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHHHHHHHHHHHHH....TTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCE CS
  Aminotran_3 264 tgGlplsavlataevmqalapgshgsTfgGnplacavalavleiiee....ekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeae 357
                  + G+ +  ++ ++ ++q+    +++     n+l  ++ ++ l +       +   e  +++  al ++Le+     e+++  R +G m+ +  +    
   CTQ29951.1 243 APGMRIGWIVMPDWLAQQTVIVKQAADLHTNMLSQVITAEYLSLNRLdnqiALIREDYRKKCVALADALESRLG--EHLEFSRPQGGMFLWARFRYPF 338
                  **************************************998876443112211122333334444444444442..4566667776666664443333 PP

                  TTCHHHHHHHHHCTEE CS
  Aminotran_3 358 vkekeilkkakekGvl 373
                   ++ e +kk +e+Gv+
   CTQ29951.1 339 -DTMEWMKKTLENGVV 353
                  .346788888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2845.00
//
Query:       CTQ29952.1  [L=621]
Description: fused glutathionylspermidine amidase; glutathionylspermidine synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-65  221.9   0.0    1.9e-65  221.5   0.0    1.1  1  GSP_synth  Glutathionylspermidine synthase preATP-grasp
    7.3e-12   45.7   0.0      2e-11   44.3   0.0    1.8  1  CHAP       CHAP domain


Domain annotation for each model (and alignments):
>> GSP_synth  Glutathionylspermidine synthase preATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.5   0.0   2.1e-69   1.9e-65      19     377 ..     243     615 ..     233     616 .. 0.88

  Alignments for each domain:
  == domain 1  score: 221.5 bits;  conditional E-value: 2.1e-69
   GSP_synth  19 pYwdesaayaftlaevee..leeateelhqmcleaaeevveeeellarlgipeellelireSwerrep.sLygRfDlaydGkgpakllEyNaDTPTsLl 114
                 ++++++ ++ ft +e +e  l +at+elh m+l+a+++v+++++lla ++ip+ l++ +r Sw+rr++  + gR+D+++d ++ +k++EyNaD   +  
  CTQ29952.1 243 HFINQDPYQYFTISESAEqeLIKATNELHLMYLHATDKVMKDDNLLALFDIPKILWPRLRLSWQRRRHhMITGRMDFCMD-ERGLKVYEYNADSASCHT 340
                 5666666666666554433599*******************************************9993457********.556*************** PP

   GSP_synth 115 EaavvqwlwledqreagelkeeadqfnslhealverfkeltleeekeklhfsavedseEDratvayLqdtakeagle.teflpiedigldeeegrfvda 212
                 E   + ++wl++    g     ++  + l ++l  ++k+    ++++++++   +++ E++ +++++q+  ++ag+e   ++ ++++ +d+  g+++da
  CTQ29952.1 341 EGGLILEQWLKQ----GYYGTGHNPAEGLLDELAGAWKH----SRARPFVHIMQDKDLEENYHAQFIQRSLTQAGFEsKILFGLDELRWDA-AGQLIDA 430
                 ************....455555666779***********....3466777777777789999***************444567*******8.******* PP

   GSP_synth 213 dgrkiellfkLyPwEwlvede...fgeelaealle.....................vrllePawklllsnKalLallWelypghpnLLpayfeedeeee 287
                 dgr +++++k++ wE  +e+     +ee a+                         v ++eP+w+++  nKa+L++lW l+p+h +LL++ fe ++ e+
  CTQ29952.1 431 DGRLVNCVWKTWAWETAIEQVrevSAEEYAA---VpirtghpqnevrlidvllrpeVLVFEPLWTVIPGNKAILPVLWSLFPHHRYLLDTDFEVND-EL 525
                 ****************998874444444444...1445889999************************************************7766.88 PP

   GSP_synth 288 kgkkyvkKplfgREGanveiveegsevaeekegeygeekviyQeyaelpkfdgsypvlgswlvgdeaaGlgiRedrglitdnlsrFvPhl 377
                 +++ y  Kp+ gR G+n+ ++++++e   +++g++ + k iyQ++  lpk dg+y ++  + vg++  G ++R d++l++++ s   P +
  CTQ29952.1 526 AKTGYAVKPISGRCGNNIDLIGPQDELLDKTSGQFVDRKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDSSLVVKKESDIEPLI 615
                 9***********************************************************************************998876 PP

>> CHAP  CHAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   2.2e-15     2e-11       3      83 .]      52     149 ..      50     149 .. 0.75

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 2.2e-15
                 CCCCTTSHHHHH.HHHHHHHS......SSSSSS..........ECTCCHHC....EEEEEECSTBS--TTEEEEEETTTTBC.T-EEEEEEEESS.EEE CS
        CHAP   3 gdgykwqCvefa.ywrlrqag......gnaddW..........nnakkakg....yknqanvgsstpkvGdivvfdrggegg.yGHVaiVekvdg.tvt 78 
                 ++g+kwqCvefa   ++ ++g      g a++           n      +    ++  an ++ +p +G+++++++gge + +GHVa++++  g +v 
  CTQ29952.1  52 YMGHKWQCVEFArRFLFLTYGfvftdvGMAYEIfslrflrevvN------DnilpLQAFANGSRRPPIAGSLLIWQKGGEFKhTGHVAVITQLVGnKVR 144
                 7899********74444455566777766777766665433322......14566666678999999************99999*******99555*** PP

                 EEESS CS
        CHAP  79 vieqN 83 
                 ++eqN
  CTQ29952.1 145 IAEQN 149
                 ****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4592.01
//
Query:       CTQ29953.1  [L=186]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-05   25.7   0.0      2e-05   24.8   0.0    1.4  1  Thioredoxin_4  Thioredoxin
  ------ inclusion threshold ------
       0.15   12.3   0.0        0.5   10.6   0.0    1.9  2  Glutaredoxin   Glutaredoxin


Domain annotation for each model (and alignments):
>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   2.2e-09     2e-05      14     149 ..      18     166 ..      16     178 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2.2e-09
                    SEEEEEEE-TT-HHHHHHHHHHHHHHHHHHHTTSEEEEEEE-..---STTTHHHHHHHTT--TT..HHHHHHHHHHHHTHHHHTTS-........H CS
  Thioredoxin_4  14 pvtvieyedlrCphCakfeeeveklleeyidtGkvkfiirdfpldkekeslkaamaarcagees..peaflaikallysqqeewaes........l 99 
                    p t +++   +Cp+  + ++++  ll e + +++v + ir    +   + l  +++ rc +  s  p   + ++++++   ++ +e          
     CTQ29953.1  18 PRTFEVFLEPTCPYSVRAFNKLDDLLDE-VGADNVTIKIRLQSQP---WHLFSGVIVRCILAAStlPHGREQAHKVMQAVADHREEFeftdhcsgP 109
                    678899999**************99999.7888888888777333...336666666666655545555555555555555555544222344431 PP

                    HHHH...............HHHH..HTS-------HHHHHHHHHHHHHHT--SS-EEEETTE CS
  Thioredoxin_4 100 kelaae..........aldkdek..feacleeekldalveaeskeakkagiestPtfiinge 149
                         +           ++ +++  + a++++++l++ +++ sk a+++gi   Ptf++ng 
     CTQ29953.1 110 -----NmnatpqqiieRIERYSHvlLGAAFARPELQDVIKWHSKYARQNGIHVSPTFMVNGL 166
                    .....1334455455555555553356789******************************96 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   5.6e-05       0.5       2      22 ..      22      42 ..      21      58 .. 0.83
   2 ?   -2.0   0.0      0.48   4.3e+03      35      51 ..     137     159 ..     134     166 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.6e-05
                  EEEESTSSHHHHHHHHHHHHT CS
  Glutaredoxin  2 vlftkptCpyCkkakrlLkel 22
                  ++f  ptCpy+++a + L++l
    CTQ29953.1 22 EVFLEPTCPYSVRAFNKLDDL 42
                  57888*********9999765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.48
                   HHHHHHHHHHH......TSSSSS CS
  Glutaredoxin  35 eeireelkels......gvrtvP 51 
                   +e+++ +k+ s      g+   P
    CTQ29953.1 137 PELQDVIKWHSkyarqnGIHVSP 159
                   67888888887555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1391.95
//
Query:       CTQ29954.1  [L=288]
Description: S-transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-09   36.6   0.1    3.5e-09   36.6   0.1    1.8  2  GST_C_2   Glutathione S-transferase, C-terminal domain
    5.6e-06   26.6   0.0    1.2e-05   25.5   0.0    1.6  1  GST_N     Glutathione S-transferase, N-terminal domain
    1.1e-05   25.6   0.3    2.4e-05   24.4   0.0    1.7  2  GST_C     Glutathione S-transferase, C-terminal domain
    2.7e-05   24.3   0.0    4.8e-05   23.5   0.0    1.3  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    4.1e-05   23.8   0.0    0.00013   22.1   0.0    1.9  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    0.00068   20.0   0.0     0.0016   18.8   0.0    1.6  1  GST_N_3   Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       3.9   1.2e+04      27      32 ..     155     160 ..     145     163 .. 0.54
   2 !   36.6   0.1   1.2e-12   3.5e-09       2      68 ..     174     244 ..     173     245 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.9
                 .CTTCS CS
     GST_C_2  27 flfGdq 32 
                  ++G+ 
  CTQ29954.1 155 PFLGGG 160
                 255555 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 1.2e-12
                 HHHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHH...HHH.HHS----TT-HHHHHHHH CS
     GST_C_2   2 aaveraleqldaaldaleahLadspflfGdqptlaDialapflvrl...raa.gpgfdireaypnlraWle 68 
                  a++r+  ++++ ld+l+++La +++++G++ t+aD a++p+++ +    ++   +f    +y+n+ +W +
  CTQ29954.1 174 YAIDRFTMEAKRQLDVLDKQLARGRYVAGEEYTIADMAVWPWYGNVvlgNVYnAAEFLDAGSYKNVLRWAQ 244
                 6899999**************************************966533313333444799*****976 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   4.1e-09   1.2e-05      18      76 .]      65     127 ..      44     127 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 4.1e-09
                 HHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET....TEEEESHHHHHHHHHH CS
       GST_N  18 rlllaakgveyevvpldfeageekspellklnplgkvPaLedn....gkkltESraIleYiar 76 
                 +l+l  +g+ey    +  ++g + s+ ++ +np+ k+PaL d+       ++ES+ Il Y+a+
  CTQ29954.1  65 LLALGVSGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALSDHsttpPTRVFESGNILLYLAE 127
                 4556699************************************9999999***********95 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.1   9.3e+03      62      85 ..     145     167 ..     143     168 .. 0.71
   2 !   24.4   0.0   8.1e-09   2.4e-05      30      93 .]     182     250 ..     171     250 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.1
                 HHHHHHHHHTTTTTTTTSHHHHHH CS
       GST_C  62 pilnwlqrlglafgqekfpnlkaw 85 
                  +l wlq   +++g  +f + + +
  CTQ29954.1 145 NWLFWLQGAAPFLG-GGFGHFYNY 167
                 57778877777777.888887765 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 8.1e-09
                 HHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHH.....HHHHHTTTTT...TTTSHHHHHHHHHHHTSH CS
       GST_C  30 kvaevlsaleeelkkqdylvGdkltlADialvpiln.....wlqrlglafg...qekfpnlkawlerimarp 93 
                 + +++l++l+++l++  y++G+++t+AD a+ p+        ++      +      ++n+ +w + + +rp
  CTQ29954.1 182 EAKRQLDVLDKQLARGRYVAGEEYTIADMAVWPWYGnvvlgNVYNAA---EfldAGSYKNVLRWAQDVGNRP 250
                 6799*****************************98775333333333...2445888999999998888877 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.6e-08   4.8e-05      20      93 ..     174     253 ..     161     254 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH.......TCC..CC-HHHHHHHHHHHTSHHHH CS
     GST_C_3  20 kkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea.......eal..kkfpklkalyervearpkik 93 
                  + + ++ ++++ l++++k l+   g y++g++ T+AD+a++ +  ++            l   +++++ ++ + v +rp++k
  CTQ29954.1 174 YAIDRFTMEAKRQLDVLDKQLA--RGRYVAGEEYTIADMAVWPWYGNVVLGnvynaaeF-LdaGSYKNVLRWAQDVGNRPAVK 253
                 5566677788999*********..899***************97777766666665642.246799***************98 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.5e-08   0.00013       6      69 ..      56     127 ..      52     128 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 4.5e-08
                 HHHHHHHHHC......T--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTE...EEESHHHHHHHHHH CS
     GST_N_2   6 hRvlialalk......glediisvvvlepkgfekseefprlnprgtVPvLwdkdgq...vineSseIlrylet 69 
                 ++v+i+l+++      g e+   +++   +g++ s+ f ++np+ ++P+L d+ ++    + eS  Il yl++
  CTQ29954.1  56 QKVTIMLEELlalgvsGAEYD-AWLIRIGEGDQFSSGFVEINPNSKIPALSDHSTTpptRVFESGNILLYLAE 127
                 556666555432211144555.355677888999999***************9888888889*********87 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   5.3e-07    0.0016       8      72 ..      53     130 ..      47     138 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 5.3e-07
                 HHHHHHHHHHHHH...T--...EEE..E---TTTT.HHHHHHH-TT--SSEE....ETTS-EEESHHHHHHHHHHHH- CS
     GST_N_3   8 pyarrvrlaLnek...glp...vev..vevtpgeh.deellaknplgkvPvL....eddgealtdSlaIidyLeelyp 72 
                 p+ ++v ++L+e+   g++   +      + +g+  +  + ++np+ k+P+L    +++ + +++S  I+ yL e+++
  CTQ29954.1  53 PNGQKVTIMLEELlalGVSgaeYDAwlIRIGEGDQfSSGFVEINPNSKIPALsdhsTTPPTRVFESGNILLYLAEKFG 130
                 7888888887765211444322332124444777779999************554444455**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       245  (0.013665); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2140.03
//
Query:       CTQ29955.1  [L=95]
Description: hypothetical protein CH1034_300063 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-47  159.4   3.7    1.9e-47  159.2   3.7    1.0  1  DUF2623   Protein of unknown function (DUF2623)


Domain annotation for each model (and alignments):
>> DUF2623  Protein of unknown function (DUF2623)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.2   3.7   1.1e-51   1.9e-47       1      92 [.       1      92 [.       1      93 [. 0.99

  Alignments for each domain:
  == domain 1  score: 159.2 bits;  conditional E-value: 1.1e-51
     DUF2623  1 mknhfgkGvlaGlkaseaksaadirkycadyrrGyvlGyshrlaekkgdrqlaafeaGelarryGlerdavaeffkegedssllryfyaGye 92
                m+nhfgkG++aGl+as+a++aa+++++cady+rG+vlGyshr++ek+gdrql+a+eaG+l+rryGl+rd+v++ffkeg++++++ryf+aGy+
  CTQ29955.1  1 MENHFGKGLMAGLQASYADTAAHAANFCADYKRGFVLGYSHRMFEKTGDRQLSAWEAGILTRRYGLDRDMVMDFFKEGGSGMAMRYFLAGYR 92
                99*****************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 734.62
//
Query:       CTQ29956.1  [L=295]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-52  176.5   0.2    6.3e-52  176.3   0.2    1.1  1  DLH            Dienelactone hydrolase family
    2.1e-05   24.2   0.2    5.7e-05   22.8   0.1    1.8  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
    0.00036   20.1   2.0       0.38   10.2   0.2    2.5  2  Peptidase_S9   Prolyl oligopeptidase family
     0.0032   17.4   2.2      0.051   13.5   0.1    2.4  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
  ------ inclusion threshold ------
      0.081   12.8   0.4       0.49   10.2   0.0    2.3  3  Abhydrolase_3  alpha/beta hydrolase fold
       0.11   12.8   0.1       0.33   11.2   0.1    1.7  2  GAF_2          GAF domain


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.3   0.2   2.1e-55   6.3e-52       1     216 [.      84     293 ..      84     294 .. 0.95

  Alignments for each domain:
  == domain 1  score: 176.3 bits;  conditional E-value: 2.1e-55
         DLH   1 idaylatpkna..kkpvvvviqeifGvndnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevst 97 
                 ++ayl+tp++   k+p+vvv++e +G+n  i+d+++r+a++GY+alaPd +   +  p+ ++++ ral+++v++v   k+++d+ aava++++ p + t
  CTQ29956.1  84 VRAYLVTPTKIadKAPAVVVVHENRGLNPYIEDVARRVAKAGYIALAPDGLSAVGGYPG-NDDEGRALQQKVDPV---KLMNDFFAAVAFMANYP-QAT 177
                 58********999************************************9998885555.556667787888888...*****************.999 PP

         DLH  98 kkvgvvGfCmGGalalllaaevpevdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsres 196
                 +kvg++GfC GG ++ + a   pe+++av+fYG   +++l+e++kikap+l ++++ D  i+ +  +  e+alk++++ +e  +Y+g+ H+F+nds + 
  CTQ29956.1 178 GKVGITGFCYGGGVSNAAAVAIPELACAVPFYG--RQPPLKEVDKIKAPLLLHYAGLDSGINEG-WPAYEQALKEHHKVYEAYLYQGVNHGFHNDSTPR 273
                 *********************************..899*************************9.8********************************* PP

         DLH 197 yneeaaedawervlelfkqv 216
                 y+ +aa  aw+r+l +f+++
  CTQ29956.1 274 YDRAAADLAWQRTLAWFEKY 293
                 *****************998 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   1.9e-08   5.7e-05      83     133 ..     160     209 ..      79     217 .. 0.83
   2 ?   -1.4   0.0      0.46   1.4e+03     217     255 ..     211     249 ..     207     265 .. 0.61

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.9e-08
                    HHHHHHHHHHHHHCTTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEEC CS
  Peptidase_S15  83 aedgadvidWlakqpwsnGkVgmtGiSYlGttqllaaatgvpalkaivpea 133
                     +d+ ++++ +a+ p+++GkVg tG+ Y+G ++++aa+ + p+l+++vp  
     CTQ29956.1 160 MNDFFAAVAFMANYPQATGKVGITGFCYGGGVSNAAAV-AIPELACAVPFY 209
                    46888888888999************************.*********965 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.46
                    TT-HHHHHCT--S-EEEEEECCSSTTCCHHHHHHHHHCC CS
  Peptidase_S15 217 drnlsedadkvkapvllvgGwnDwnvkngaiklyealka 255
                    ++ + +++dk+kap+ll  +  D +  +g  ++ +alk+
     CTQ29956.1 211 RQPPLKEVDKIKAPLLLHYAGLDSGINEGWPAYEQALKE 249
                    566778899999998876655563444443333344444 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.2   0.00013      0.38      41      87 ..     156     201 ..     117     207 .. 0.75
   2 !    9.0   0.1    0.0003       0.9     130     205 ..     211     284 ..     205     294 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00013
                   GHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GG CS
  Peptidase_S9  41 gqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpd 87 
                     + ++Df+aa+ ++a+  ++ + +++itG  yGG +++aa+   p+
    CTQ29956.1 156 PVKLMNDFFAAVAFMANYPQA-TGKVGITGFCYGGGVSNAAAVAIPE 201
                   456789******999766654.79***************99876555 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0003
                   HHHHH-CGGG-----EEEEEEETT-SSS-THHHH.HHHHHHH--S-SEEEEEETTS-SSTTSSHHHH.HHHHHHHHHH CS
  Peptidase_S9 130 elspyspldnvkaypplLlihGlaDdrvppaeal.klvaaLqkkgknvlllifpdegHgvgkprakv.eelarllaFl 205
                   ++ p++ +d+  +++plLl  + +D+ +  +e+   + +aL++++k ++   + + +Hg+ ++++ + ++ a  la+ 
    CTQ29956.1 211 RQPPLKEVDK--IKAPLLLHYAGLDSGI--NEGWpAYEQALKEHHKVYEAYLYQGVNHGFHNDSTPRyDRAAADLAWQ 284
                   5566777777..8899999999999988..44441456789999999***************9999988888888874 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   1.7e-05     0.051       6      52 ..     163     208 ..     160     216 .. 0.91
   2 ?    2.9   0.2     0.029        88     189     211 ..     272     294 ..     249     295 .] 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSSEEEEEEE CS
      BAAT_C   6 FeeainyllrhpkvkkdkigllGiSkGgelalllasflkkisavvli 52 
                 F  a++++ + p+ +  k+g+ G + Gg + ++ a+  ++  ++v  
  CTQ29956.1 163 FFAAVAFMANYPQAT-GKVGITGFCYGGGVSNAAAVAIPELACAVPF 208
                 4569**********9.9*************************99965 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHHHHHHHHHHHH- CS
      BAAT_C 189 tkahakAqedsWkkilkFlkkhl 211
                 ++++ +A+  +W+++l+ ++k l
  CTQ29956.1 272 PRYDRAAADLAWQRTLAWFEKYL 294
                 6778889999***********98 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.31   9.2e+02     161     194 ..      92     125 ..      46     127 .. 0.72
   2 ?   -2.6   0.0       1.4   4.1e+03      69      91 ..     176     198 ..     159     207 .. 0.70
   3 ?   10.2   0.0   0.00016      0.49     167     210 ..     223     267 ..     205     268 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.31
                    S-SST---EEEEEETT-TTHHHHHHHHHHHHHTT CS
  Abhydrolase_3 161 edlsglpptlvvvaefDplrdegeayaerlraag 194
                    +++++ +p++vvv e+  l    e++a+r+++ag
     CTQ29956.1  92 TKIADKAPAVVVVHENRGLNPYIEDVARRVAKAG 125
                    2567778899999998888888888888888876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.4
                    TTCEEEEEEETHHHHHHHHHHHH CS
  Abhydrolase_3  69 dpsrivlaGdSaGGnlaaavalr 91 
                     + ++ + G   GG  + a+a++
     CTQ29956.1 176 ATGKVGITGFCYGGGVSNAAAVA 198
                    45688899999999999888876 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00016
                    --EEEEEETT-TTHHHHH.HHHHHHHHTT--EEEEEETTEETTGG CS
  Abhydrolase_3 167 pptlvvvaefDplrdege.ayaerlraagvevelieyegmvHgfa 210
                    +p l+  a+ D   +eg+ ay ++l+++ +  e   y+g+ Hgf+
     CTQ29956.1 223 APLLLHYAGLDSGINEGWpAYEQALKEHHKVYEAYLYQGVNHGFH 267
                    688999999999999998799***********************8 PP

>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00011      0.33      61     131 ..      55     123 ..      49     130 .. 0.85
   2 ?   -0.3   0.0      0.41   1.2e+03      19      48 ..     120     146 ..     110     156 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
                 HHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EEEEEE-TTS---EEEEES......--HHHHHHHHHHHH CS
       GAF_2  61 ealrtgrpvilndleedpdkkglpaghaglrsflavPlisegrvvGvlnlyankppafdeedlelLeelae 131
                 +al+++ p+   d++ ++ + ++p gh  +r+ l+ P    ++  +v+++  ++ +++++   ++++ +a 
  CTQ29956.1  55 YALAEQVPFTDPDIRPEYIHYPSPDGHGEVRAYLVTPTKIADKAPAVVVV--HENRGLNPYIEDVARRVAK 123
                 8999**********************************776699999998..4555588988888888875 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.41
                 S...EEEEEEE-TTS-EEEEEEEES-TTSTT CS
       GAF_2  19 g.aalgyillvdddgglrlaawgeaeeefga 48 
                   a +gyi+l    +g  l+a g++++++++
  CTQ29956.1 120 RvAKAGYIALAP--DG--LSAVGGYPGNDDE 146
                 335699999977..77..7777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2237.20
//
Query:       CTQ29957.1  [L=164]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-36  123.7   4.9    4.4e-36  123.7   4.9    1.4  2  UPF0114   Uncharacterized protein family, UPF0114
  ------ inclusion threshold ------
       0.14   12.7   0.4         13    6.4   0.0    2.2  2  RPAP3_C   Potential Monad-binding region of RPAP3
       0.15   12.2   4.2       0.38   10.9   0.1    2.2  2  SYS1      Integral membrane protein S linking to the trans Go


Domain annotation for each model (and alignments):
>> UPF0114  Uncharacterized protein family, UPF0114
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   4.9   7.3e-40   4.4e-36       1     118 []       9     125 ..       9     125 .. 0.96
   2 ?   -3.2   0.2       1.6   9.4e+03      15      24 ..     143     152 ..     136     160 .. 0.47

  Alignments for each domain:
  == domain 1  score: 123.7 bits;  conditional E-value: 7.3e-40
     UPF0114   1 lfasRflvllavlglllaslllfikgvlellelvveafkaklteelilavleliDlvLigtvllivglGlYelFvskldleeeeerpewLeirsldeLK 99 
                 ++asR+l++++++gl l++++l+ik+++e+++++ ++f+  +++++il +l+l+D++L+g +l++v++++Ye+Fvs+ld++e +e+ +wL++ ++++LK
  CTQ29957.1   9 MYASRWLLAPVYFGLSLGLIALTIKFFQEIFHILPHIFS-VSESDMILTLLSLVDMTLVGGLLVMVMFSGYENFVSQLDINEGKEKLSWLGKMDATSLK 106
                 689***********************************5.3555******************************************************* PP

     UPF0114 100 tklakvivailsvhllkkf 118
                 +k+a++ivai+s+hll+ f
  CTQ29957.1 107 NKVAASIVAISSIHLLRVF 125
                 ****************976 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.6
     UPF0114  15 lllaslllfi 24 
                  l  +l  f+
  CTQ29957.1 143 HLTFVLSAFV 152
                 3333333333 PP

>> RPAP3_C  Potential Monad-binding region of RPAP3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.4    0.0075        45      42      88 ..      30      75 ..      28      80 .. 0.70
   2 ?    6.4   0.0    0.0021        13      48      80 ..     119     163 ..      75     164 .] 0.68

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0075
     RPAP3_C 42 ledeilsdildalnerlqeekaedsslvleiLdrLskvkRFdmlvmf 88
                l+ +++++i+++l + + ++ ++d+ l+l  L  ++ v    ++vmf
  CTQ29957.1 30 LTIKFFQEIFHILPHIFSVS-ESDMILTLLSLVDMTLVGGLLVMVMF 75
                78899************996.44455555555556666666666665 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0021
     RPAP3_C  48 sdildalnerlqeekaeds...............slvleiLdrLskvk 80 
                   +l+++ +++++ +   +               ++v+ +LdrL+kvk
  CTQ29957.1 119 IHLLRVFMDAKNVPD---NklmwyviihltfvlsAFVMGYLDRLTKVK 163
                 445555556666654...33458888888888889***********97 PP

>> SYS1  Integral membrane protein S linking to the trans Golgi network
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.0     0.025   1.5e+02      18      65 ..      16      64 ..      12      78 .. 0.71
   2 ?   10.9   0.1   6.3e-05      0.38      93     137 ..     115     160 ..     107     164 .] 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.025
        SYS1 18 lqlayYliaavlilltallagkelsl.dllfswesldvddtsgrllilv 65
                l  +y+ + + li+lt +++++ +++  ++fs+++ d+  t  +l+ + 
  CTQ29957.1 16 LAPVYFGLSLGLIALTIKFFQEIFHIlPHIFSVSESDMILTLLSLVDMT 64
                5668999999999999999988887659999999888766655554444 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6.3e-05
        SYS1  93 TihvihlvvvslytralPas.laWwllqvlsaaimivlgeylcrrr 137
                 +i  ihl+ v++  +++P + l+W+++  l++++ +++  yl r +
  CTQ29957.1 115 AISSIHLLRVFMDAKNVPDNkLMWYVIIHLTFVLSAFVMGYLDRLT 160
                 6788**************75389***********999988876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1274.99
//
Query:       CTQ29958.1  [L=510]
Description: putative glycoside hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-61  208.3   0.5    1.9e-61  207.9   0.5    1.2  1  Glyco_hydro_43  Glycosyl hydrolases family 43
    5.1e-23   81.9   0.0    7.4e-23   81.3   0.0    1.2  1  GH43_C2         Beta xylosidase C-terminal Concanavalin A-lik


Domain annotation for each model (and alignments):
>> Glyco_hydro_43  Glycosyl hydrolases family 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.9   0.5   2.1e-65   1.9e-61       1     288 []       9     279 ..       9     279 .. 0.92

  Alignments for each domain:
  == domain 1  score: 207.9 bits;  conditional E-value: 2.1e-65
                     EESESBCSSEESEEEEEETTCEEEEEEEBTEESEEEEEEESSSSSCEEEEECEESTTTCSTTTEECT...EEEEEEEETTEEEEEEEEEETTCCC CS
  Glyco_hydro_43   1 yrnPvlsgfypDpsilrvgedyYlvtstfewfpglrifhSkdLvnWkqvgrvlerrsqlsmkgknas...WAPeiskhdgkyylyytatkkgeak 92 
                     y+nP+l  +y+Dp+i+rvg+d+++v s+f+ +p l+i hS+dLvnW+ +++v+++ +   + + +     WAP+i+ hdgk ++ ++     + +
      CTQ29958.1   9 YQNPILCADYSDPDIVRVGDDFFMVSSSFNHVPALPILHSTDLVNWTIINHVMDELPLPGYDRYQPGkgvWAPSIRWHDGKLWVCFS-----TPD 98 
                     89****************************************************9887665433322456*****************.....799 PP

                     SEEEEEEESSTTS--EECEESSCSTSSECEEEEEEETTSEEEEEEEEEHCC.CSEEEEEEEEEETTTTEEEEEEEEEEECGCCTCTTBBEEEEEE CS
  Glyco_hydro_43  93 qgifvvtadspeGpwsdpiklktsgssgiDpslfedddGkkYlvwgqwdkr.eghseiylaeldddtlklkgektklikagtelkglkvtEGPhl 186
                     +gif+   ++p G+ws+p+ l  +  + iDp+ f+dd+G+++lv++  ++r  +++++ l  +++d  +l ge  ++i++g+   +l + EGP++
      CTQ29958.1  99 EGIFICHTEDPWGEWSAPHCLR-EARGWIDPCPFWDDNGQAWLVHAFAHSRsGIKHKLQLFAMAPDASELLGEG-QIIYDGC--CDLPTLEGPKV 189
                     *********************5.59999*******************9999999********************.*******..99********* PP

                     EEETTEEEEEEEESTSSTTEEEEEEEESSTTSGGEEECTCCSEE.TBTTSTSEEEEEEEEEE-TTSS.EEEEEEEESCCTTCCGTTSSEEEEEEE CS
  Glyco_hydro_43 187 ykrdgyyYLlaaeggtgseyavvvarsksllgPyewkkknpiltsrspeepiqgpGHaslvetpdge.wyivyhagrpegrglytlgRetllqrv 280
                     y+r g+yY++a +gg++    ++v r+++++gP+e k   ++l++   +++i+gp+++++ve ++ge w+++++           +gR ++lq++
      CTQ29958.1 190 YQRAGWYYIFAPAGGVENGW-QTVLRARQMTGPWEAK---NVLFQ--GNTSINGPHQGGWVEGEEGEcWFVHFQDLHL-------YGRVVHLQPM 271
                     *****************876.788999******9888...77886..69******************66666666666.......********** PP

                     EEETTSEE CS
  Glyco_hydro_43 281 ewkaDGwp 288
                      w +DGwp
      CTQ29958.1 272 SWGNDGWP 279
                     *******8 PP

>> GH43_C2  Beta xylosidase C-terminal Concanavalin A-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   8.2e-27   7.4e-23       1     200 [.     314     507 ..     314     508 .. 0.81

  Alignments for each domain:
  == domain 1  score: 81.3 bits;  conditional E-value: 8.2e-27
     GH43_C2   1 rddFdsdkLglqWqwlrnPkdedwyslterpgyLrLkgre..slss....keapsllarRqqafsftattklefepekegeeAGLvvyqneyhyyslev 93 
                 +d F++ + g+qWqw++nP   +w  l   +g LrL++ +  +++     + ap+ll+++++a  f+a+t++++   ++g+  GL+vy++ y+ + +e+
  CTQ29958.1 314 SDYFAQGQPGIQWQWQANPS-PEW--LLPAEGELRLRCVPlsEVDGqralYWAPQLLLQKFPALTFSAKTSVTLYAAQDGDAGGLIVYGERYAALLVEF 409
                 689*****************.9**..5589********966344443333578************************************9888888888 PP

     GH43_C2  94 tkdekgkrvlrlvkadngeakeelkeekvplqtevkevyLrleveedkakfsysyd.gkeweeigeeldgtllsdefaeggFtGafvGlfatgn.gkes 190
                     +g++ l  +     +a    ++++v ++ ++ ++ L++ v e +  +++s++ ++ew++++             +g+++Ga++Gl a ++ g +s
  CTQ29958.1 410 G---QGGYRLVWRHGWMSDAGVVRETRQVLAELKCGKCQLQVAVGE-GGLCQFSWRaEEEWRKVPL------CFAAG-KGKWVGAKFGLLAASMvGLQS 497
                 7...567777777665566666667789999999999******988.5556666651577999998......44444.6**************999999 PP

     GH43_C2 191 sgyAdFdwfe 200
                 +gy   + fe
  CTQ29958.1 498 EGYSALQDFE 507
                 9998888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3934.41
//
Query:       CTQ29959.1  [L=472]
Description: Inner membrane symporter YicJ [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     1e-102  343.9  39.3   1.2e-102  343.7  39.3    1.0  1  MFS_2           MFS/sugar transport protein
    2.9e-13   49.5  34.2    2.9e-13   49.5  34.2    2.1  2  MFS_1           Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.24   11.0   0.1       0.36   10.4   0.1    1.1  1  Rubella_Capsid  Rubella capsid protein
        2.2    6.4  21.2       0.33    9.1   2.6    2.6  3  BT1             BT1 family


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.7  39.3  2.7e-106  1.2e-102       1     427 []      14     440 ..      14     440 .. 0.95

  Alignments for each domain:
  == domain 1  score: 343.7 bits;  conditional E-value: 2.7e-106
       MFS_2   1 syglgalaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfiw 99 
                 +yg+g++a++i+++ ++++l++Fytd++glsaa+vg+++lv+r++DaitDp+ G+++d+++trwG +rPwl   a+++av  ++ ft+pe++ s+k+++
  CTQ29959.1  14 GYGMGDAACGIVYSSVTMFLTWFYTDIYGLSAAAVGVMFLVTRVLDAITDPLTGIVADRVKTRWGHFRPWLIWFAVPYAVLAVMTFTTPEFGASGKLVY 112
                 6************************************************************************************************** PP

       MFS_2 100 llvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkerve 198
                 +++ty+ll+++yt+++ipy++l+ v+t+d ++R+s++s+r+++s l+g+++++ +  lv ++g  ++++ g+ +++ i+ ++++++  ++++ tkerv+
  CTQ29959.1 113 AYLTYTLLMLCYTFINIPYCALGGVITRDEKDRLSAQSYRFTISSLAGLMVSVATLFLVDFFGK-ENKQFGFQATMGIMGAIAIVMLAFCFFSTKERVA 210
                 ***************************************************************9.********************************76 PP

       MFS_2 199 mrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvl.....g.ngsaasvfllvv.tisallgiplwqplakrlgkkn 290
                       ++ ++++s++e+l++++ n++++i++++ ++ ++a++++ +++lYy+ty +       +g+a++  ++ + ++++++g++ + +lakr+    
  CTQ29959.1 211 ------PAVEQQGSIREDLRQLLANDQWRIVAIITFFSSMAGVMRSAATLYYATYLMlggveSaAGTAMKSAFVSTsVVGTIIGSIAAGWLAKRYRAVS 303
                 ......59***********************************************864422222344444444444577778***************** PP

       MFS_2 291 tyllgalltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsafgyrak 389
                 ++    ll+++ +v++++++p+ l +++ l++++gf+ ++ + + w m+a ++Dyge+k G+r +g+ ++ ++f+ k++++++++++g++L++fgy+a+
  CTQ29959.1 304 LFKNINLLLVLVGVVMFFVPPTWLPVVFPLYFLVGFFHQMYQPFKWNMMANAADYGEWKFGRRITGLSYSGNLFALKMGMAVAGAAVGFSLGLFGYQAG 402
                 *******************9999999999********************************************************************** PP

       MFS_2 390 asvqspqvvlalrllyavlpavlllvallllvryplnd 427
                   +q+p +++++  l+++ p++ +l+  +l  +y+l+d
  CTQ29959.1 403 VTAQTPLATMGIVGLLTLGPSLSYLLLWWLARFYKLDD 440
                 ************************************97 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5  34.2   6.4e-17   2.9e-13       9     328 ..      23     355 ..      18     360 .. 0.76
   2 ?   -4.9   8.6       2.2   9.7e+03     123     297 ..     377     423 ..     364     441 .. 0.50

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 6.4e-17
       MFS_1   9 alarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalg.lllll..fa......sslw.lllvlrvlqG 96 
                 ++ +s ++++l++++++ +g+s++++g ++ +  ++ a++ +++G ++dr+  r+  +   l++fa+  ++l++  f+      s+   + ++   l  
  CTQ29959.1  23 GIVYSSVTMFLTWFYTDIYGLSAAAVGVMFLVTRVLDAITDPLTGIVADRVKTRWgHFRPWLIWFAVPyAVLAVmtFTtpefgaSGKLvYAYLTYTLLM 121
                 5667888999999************************************88777777777777777774444443342334444443447888888999 PP

       MFS_1  97 lgagalfpagaaliadwfpk.eergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkee 187
                 l++ +++    al   ++ + ++r +a ++  + +sl+ ++  ++  +l++ +g       ++a++ i++++++++  l+++++ ++++  + ++++  
  CTQ29959.1 122 LCYTFINIPYCALGGVITRDeKDRLSAQSYRFTISSLAGLMVSVATLFLVDFFGkenkqfgFQATMGIMGAIAIVM--LAFCFFSTKERVAPAVEQQGS 218
                 9998888888888888888889******************************************************..666***999999999988888 PP

       MFS_1 188 ekgtgpaplvpawkallkdpvlw..illialllfffgfsg.....lltllplylqevlgls...glllaglllallalvgailallagrlsdrlgrrrr 276
                      +  l++   +l +d+  w  +   a+++ff  ++g     ++ +  +y  +  g     g  + +++++ + ++++i+++ ag+l++r+ +   
  CTQ29959.1 219 ----IREDLRQ---LLANDQ--WriV---AIITFFSSMAGvmrsaATLYYATY-LMLGGVEsaaGTAMKSAFVSTSVVGTIIGSIAAGWLAKRYRAVSL 304
                 ....6666666...777788..8532...333333333333366744444444.33333334565555555777777888888**********999888 PP

       MFS_1 277 lllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdl 328
                    + lll+l+ + ++++++t   +++  +++l+Gf++ +++p  ++++++ 
  CTQ29959.1 305 FKNINLLLVLVGVVMFFVPPT-WLPVVFPLYFLVGFFHQMYQPFKWNMMANA 355
                 877777777777777788888.34444458888***9999987666666555 PP

  == domain 2  score: -4.9 bits;  conditional E-value: 2.2
       MFS_1 123 igllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkallkdpvlwillialllff 220
                 ++l ++++ +Ga++g  lg + + + +  + +   ++iv+ll                                                         
  CTQ29959.1 377 FALKMGMAVAGAAVGFSLGLFGYqAGVTAQTPLATMGIVGLLT-------------------------------------------------------- 419
                 4444444444555554444444422223555555555555554........................................................ PP

       MFS_1 221 fgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                                                                                          l+++
  CTQ29959.1 420 -------------------------------------------------------------------------LGPS 423
                 .........................................................................3333 PP

>> Rubella_Capsid  Rubella capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   7.9e-05      0.36     245     296 ..      53     105 ..      45     108 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.9e-05
                     ---XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX CS
  Rubella_Capsid 245 mpvrgldgdsaplpphtterietrsar.hpwrirfgapqaflaglllatvavg 296
                     +  r ld  + pl    ++r++tr  + +pw i f  p a+la + ++t   g
      CTQ29959.1  53 LVTRVLDAITDPLTGIVADRVKTRWGHfRPWLIWFAVPYAVLAVMTFTTPEFG 105
                     557999******************87537**************9988876555 PP

>> BT1  BT1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.6   7.3e-05      0.33      12     198 ..      33     225 ..      21     234 .. 0.59
   2 ?    7.7   5.5    0.0002      0.91     106     171 ..     254     319 ..     225     323 .. 0.74
   3 ?   -2.2   0.2       0.2   8.9e+02     440     463 ..     374     397 ..     371     443 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 7.3e-05
         BT1  12 vqfmltdrlgidparyqrlsglat.lgwvikpltallsDgfal.lGytkrwYlvvscllgaafallygllpakeasakvaaafi..llsslgkaivdv. 105
                 +  + td +g+++a++ ++  ++  l  +  plt++++D +    G  + w ++ ++  ++++++ +   p+  as k+  a++   l  l   ++++ 
  CTQ29959.1  33 LTWFYTDIYGLSAAAVGVMFLVTRvLDAITDPLTGIVADRVKTrWGHFRPWLIWFAVPYAVLAVMTFT-TPEFGASGKLVYAYLtyTLLMLCYTFINIp 130
                 55677999********999877652789999**********982566666666666555555555544.444444433333333113333444444440 PP

         BT1 106 ..lsdalvselarqspkagpsLvSwiwlvsavGgiiasv.......lsGpLldagktrisvlvsaalqlltvvvflfnwygerknrveraeD.allike 194
                   +  +++++  +       s +S+ + +s++ g++ sv       + G   +++  + ++ +++a++++ + +     +   k rv+ a +   +i+e
  CTQ29959.1 131 ycALGGVITRDEKD----RLSAQSYRFTISSLAGLMVSVatlflvdFFGKENKQFGFQATMGIMGAIAIVMLAF----CFFSTKERVAPAVEqQGSIRE 221
                 00444444444443....22445555555555554444400000005566666677777788888888877777....555667777776655899999 PP

         BT1 195 elrk 198
                 +lr+
  CTQ29959.1 222 DLRQ 225
                 8886 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0002
         BT1 106 lsdalvselarqspkagpsLvSwiwlvsavGgiiasvlsGpLldagktrisvlvsaalqlltvvvf 171
                 l  a +  l+  + +ag +++S    +s+vG ii+s+  G L++ + +   +    +l +l +vv 
  CTQ29959.1 254 LYYATYLMLGGVESAAGTAMKSAFVSTSVVGTIIGSIAAGWLAKRYRAVSLFKNINLLLVLVGVVM 319
                 4455666666668999*****************************999999888888777777773 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.2
         BT1 440 svvfallasianlgqvvssslGal 463
                 + +fal +++a  g  v+ slG  
  CTQ29959.1 374 GNLFALKMGMAVAGAAVGFSLGLF 397
                 678999999999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       940  (0.052429); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3357.94
//
Query:       CTQ29960.1  [L=141]
Description: membrane spanning protein in TonB-ExbB-ExbD complex [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-31  109.0   0.4    2.1e-31  108.8   0.4    1.0  1  ExbD      Biopolymer transport protein ExbD/TolR
  ------ inclusion threshold ------
        0.2   11.4   0.1         11    5.8   0.0    2.3  2  NETI      NETI protein


Domain annotation for each model (and alignments):
>> ExbD  Biopolymer transport protein ExbD/TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.4   2.3e-35   2.1e-31       3     127 ..      13     134 ..      11     137 .. 0.97

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 2.3e-35
        ExbD   3 resaeinltpmiDvvflLLifFlvtaklkkpeplevdlPsssstqkeveekelirisisadgsiyldkkavsveelaqklkerkakppdkltvaikadk 101
                  e+ ein+tp+iDv+++LLi+F+v+a+l++ + ++v+lP sss+  +  ++++i++s++ad+s++l+ ++v+ +++ ++l+ + a ++d  tv ++adk
  CTQ29960.1  13 GEMHEINVTPFIDVMLVLLIIFMVAAPLATVD-VKVNLPASSSQP-QPRPEKPIYLSVKADKSMFLGNDPVTEANMINALDSLTAGKKDT-TVFFRADK 108
                 6899****************************.************.5*******************************************.******** PP

        ExbD 102 dvsygklvevldtlkkagiekvslvt 127
                 +v y+++++v+dtl++ag+ k++lv 
  CTQ29960.1 109 TVDYETMMKVMDTLHQAGYLKIGLVG 134
                 ***********************985 PP

>> NETI  NETI protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0012        11      24      41 ..      56      73 ..      54      76 .. 0.84
   2 ?    3.3   0.0    0.0077        69       6      24 ..     111     129 ..     108     132 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0012
        NETI 24 PvrRiEkPvFkevkkngk 41
                P  R EkP++  vk +++
  CTQ29960.1 56 PQPRPEKPIYLSVKADKS 73
                7779*******9988775 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0077
        NETI   6 eneTIedcLeRmkkeGYmP 24 
                 + eT+ ++++ ++++GY+ 
  CTQ29960.1 111 DYETMMKVMDTLHQAGYLK 129
                 569**************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1116.54
//
Query:       CTQ29961.1  [L=243]
Description: membrane spanning protein in TonB-ExbB-ExbD complex [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-33  114.7   2.3    4.9e-33  113.6   2.3    1.6  1  MotA_ExbB  MotA/TolQ/ExbB proton channel family
  ------ inclusion threshold ------
       0.22   11.4   6.0      0.065   13.1   1.5    2.2  2  LapA_dom   Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   2.3   5.5e-37   4.9e-33       8     119 ..      86     203 ..      70     209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 5.5e-37
                 HHHHHHHHH.HT.....-HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSGGCTHHHHHHHHHHHHHH CS
   MotA_ExbB   8 rilkaglqe.kl.....vdgaepeelrraleealsreeerlekglsilatigslaPllGLlGTVlGlieafqaladagsadlakvapgiaeALiaTalG 100
                 ++++++ +e +l     +++  +e++   le+ +++  +++ +g  +latig+++P++GL+GTV+G++++f  +a++++++la+vapgiaeAL+aTa+G
  CTQ29961.1  86 QLINEAQNElELsagaeDNEGIKERTGFRLERRVAAVGRHMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIG 184
                 55555555443355555667777888888*************************************************99******************* PP

                 HHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB 101 lvvAipavlaynklkrkve 119
                 l++Aipav++yn++ r + 
  CTQ29961.1 185 LFAAIPAVVIYNIFARMIG 203
                 **************99876 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.5   7.2e-06     0.065      26      63 ..      25      62 ..      21      63 .. 0.91
   2 ?   -0.7   0.2      0.14   1.3e+03      16      34 ..     176     194 ..     161     207 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.2e-06
    LapA_dom 26 afgiGallgwllslwsylrlrrelrrlkkkikklekel 63
                ++ iG++l+ ++++   + +  e+ + k+++k+ +++l
  CTQ29961.1 25 VVMIGLILASVVTWAIFFGKGAEILASKRRLKREQQQL 62
                678***********9999*****************998 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.14
    LapA_dom  16 elpLsllllvafgiGallg 34 
                 e+ L++ + ++++i a+++
  CTQ29961.1 176 EALLATAIGLFAAIPAVVI 194
                 5666777777777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2065.58
//
Query:       CTQ29962.1  [L=33]
Description: hypothetical protein CH1034_300070 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       100  (0.00557756); expected 358.6 (0.02)
Passed bias filter:                       83  (0.00462937); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 300.58
//
Query:       CTQ29963.1  [L=395]
Description: cystathionine beta-lyase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.6e-119  397.1   0.0   6.3e-119  396.9   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
     0.0035   16.3   0.0     0.0054   15.7   0.0    1.2  1  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  396.9   0.0    7e-123  6.3e-119       1     381 [.       7     391 ..       7     392 .. 0.96

  Alignments for each domain:
  == domain 1  score: 396.9 bits;  conditional E-value: 7e-123
                      HHHHHHTTTTCHTTTTBSS--B---SBBBESSHHHH...CTTCSSS.-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-T CS
  Cys_Met_Meta_PP   1 eTllvhagqekdeqtgavavpiyltstykfkdvdea...fageekg.yeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallka 90 
                      +T+lv+ag++k+ ++g+v+++i+++s+++f++v+++   ++++++g  +Y+R+g+ t+  l+e++++Legg+ + ++++G aA+a++ila++++
       CTQ29963.1   7 DTALVNAGRSKKYTQGSVNSVIQRASSLVFDTVEAKkhaTRNRANGeLFYGRRGTLTHFSLQEAMCELEGGAGCALFPCGAAAVANTILAFVEQ 100
                      699*****************************998888877777778*********************************************** PP

                      TEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT..-EEEEEGTTTHTTTS CS
  Cys_Met_Meta_PP  91 GdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkag..vlvvvDntfaspllq 182
                      Gd++++++++Y+++q++++k+l klg++++++d+   +++++ ++++t++v+lE+p++++++v+D+++i+++++++   +++++Dnt+a+++l+
       CTQ29963.1 101 GDHVLMTNTAYEPSQDFCTKILAKLGVTTSWFDPLIGADIARLVRPETRVVFLESPGSITMEVHDVPAIVAAVRQVApeAIIMIDNTWAAGILF 194
                      ****************************************************************************888*************** PP

                      -GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEE CS
  Cys_Met_Meta_PP 183 rplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekv 276
                      ++l++g+Di+++++TKyl Ghsd+++G++v++++++ + +     + +G++l++++a+++ rGl+TL++Rl++h+e++l++Ae+L++hp+v +v
       CTQ29963.1 195 KALDFGIDISIQAGTKYLIGHSDAMVGTAVANARCWPQLRE--NAYLMGQMLDADTAYMTSRGLRTLGVRLRQHHESSLRIAEWLAQHPQVARV 286
                      *********************************77766654..478************************************************ PP

                      E-TTSTTSTTHHHHHHHSSSG-SEEEEEESSHH..HHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS CS
  Cys_Met_Meta_PP 277 yYpglpshpqhelakkqlkgaggvlsFelksee..ekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiE 368
                      ++p+lp +++he++k++++g++g++sF l +++  ++ ++++dn++lfs+a+s+Gg+esli +++ +++a+i+++++ +   + +liRl++G+E
       CTQ29963.1 287 NHPALPGSKGHEFWKRDFTGSSGLFSFVLSKRLndAELAEYLDNFSLFSMAYSWGGFESLILANQPEQIAHIRPDAEVDF--SGTLIRLHIGLE 378
                      *******************************99888899***********************************987766..559********* PP

                      -HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 369 dvdDliaDlkqal 381
                      +vdDl aDl++++
       CTQ29963.1 379 NVDDLQADLAAGF 391
                      **********998 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     6e-07    0.0054      75     203 ..      88     212 ..      82     259 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6e-07
                  HHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHH.T.T- CS
  Aminotran_5  75 nlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakk.k.ga 170
                  ++va+++++ +++gd++++t++ +      + ++  + g++  ++       l   +++ l++++t++v++    ++t  +++v++i++++++ + +a
   CTQ29963.1  88 AAVANTILAFVEQGDHVLMTNTAYEPSQDFCTKILAKLGVTTSWFDP-----LIGADIARLVRPETRVVFLESPGSITMEVHDVPAIVAAVRQvApEA 180
                  6899999888**********998765444555555577888888777.....555788899********************************648** PP

                  EEEEE-TTTTTTS---HHHHTESEEEEETTTTT CS
  Aminotran_5 171 lvlvDaaqavghipidvkklgvDflafsghKll 203
                  ++++D + a+g i ++  ++g+D+    g K+l
   CTQ29963.1 181 IIMIDNTWAAG-ILFKALDFGIDISIQAGTKYL 212
                  *****987765.557777888888888888843 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2967.40
//
Query:       CTQ29964.1  [L=219]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-19   68.8   4.4    5.8e-19   68.8   4.4    1.8  3  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.57     1e+04      97     111 ..      17      31 ..       4      38 .. 0.49
   2 !   68.8   4.4   3.2e-23   5.8e-19       1     119 [.      48     173 ..      48     174 .. 0.93
   3 ?   -2.8   0.0      0.47   8.5e+03       7      12 ..     199     204 ..     182     212 .. 0.53

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.57
  SNARE_assoc  97 krFflatfiGsipwa 111
                  +  +  +++G +  +
   CTQ29964.1  17 AALANPHVVGVVYLV 31 
                  444444444444333 PP

  == domain 2  score: 68.8 bits;  conditional E-value: 3.2e-23
  SNARE_assoc   1 lPsevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgrkalrrkllsekrvka...lerlverygflallllrllpivPrdlvnyvaG 90 
                  lP++ ll++aG+l+     +++ ++ ++ ++a+lG++l+y+ gr+lg+ + ++ +l + + k+   ++ +++r+g lall +r+l++v r+l++ +aG
   CTQ29964.1  48 LPGDSLLLLAGALIakgvmDFVPTIAILTAAASLGCWLSYVQGRWLGNTQTVKGWLAHLPHKYhqrATCMFDRHGLLALLAGRFLAFV-RTLLPTMAG 144
                  699***********999999999*************************99999998876666645688899*****************.********* PP

  SNARE_assoc  91 ltrvsfkrFflatfiGsipwalvyaylGs 119
                  +++++ +rF +++++++++w++v++ lG+
   CTQ29964.1 145 ISGLPNRRFQFFNWLSALLWVCVVTGLGY 173
                  ****************************8 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.47
  SNARE_assoc   7 lvaaGv 12 
                  l++aG+
   CTQ29964.1 199 LLLAGL 204
                  222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1855.47
//
Query:       CTQ29965.1  [L=301]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-37  128.9   0.0    1.7e-37  128.3   0.0    1.3  1  AraC_N    AraC-type transcriptional regulator N-terminus
    3.8e-22   78.4   0.6    7.5e-22   77.4   0.6    1.5  1  HTH_18    Helix-turn-helix domain
    2.1e-19   69.1   0.5      7e-09   35.6   0.1    2.6  3  HTH_AraC  Bacterial regulatory helix-turn-helix proteins, Ara
      0.004   16.9   0.2       0.03   14.1   0.0    2.3  2  TetR_N    Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> AraC_N  AraC-type transcriptional regulator N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   0.0   3.8e-41   1.7e-37       2     147 ..      30     180 ..      29     181 .. 0.94

  Alignments for each domain:
  == domain 1  score: 128.3 bits;  conditional E-value: 3.8e-41
      AraC_N   2 ipglslfrtsepaevalvvyepslcivlqGkKrvhlgdeafeydpgeylvvsvdlpveievveaspekPylglalaldpellaell..aeae.....ke 93 
                 +p+++l+  ++p ++++v+y+p++++ ++G+K  ++++++f+yd +eyl+++v+lp+e+e+  a+pe P+ g++l++d  +l+ell           ++
  CTQ29965.1  30 LPDVRLLYGTQPGPRTPVMYQPGIVFLFSGHKIGYINERTFRYDTNEYLLLTVPLPFECET-FATPEVPLAGMRLNVDILQLQELLmdI--GedplfQP 125
                 68999********************************************************.************************551..34566766 PP

      AraC_N  94 e.ssrglavskldeelldallRLlrlldspedipvLaplivrEilyrlLqgeqga 147
                 + +s+g+ ++ l+e++l a++RLl+++++p d+++L+++ivrEily +L+g+ g+
  CTQ29965.1 126 AvASSGINSAVLSEDILCAAERLLDVMERPLDARILGKQIVREILYYVLTGPCGG 180
                 679*************************************************986 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.6   1.7e-25   7.5e-22       1      77 [.     215     290 ..     215     294 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 1.7e-25
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPse 77 
                 laa++++s + +++ fk+v+ ++p +yl+++Rl++Ar l+++  g++ +++A+++G++++s+Fsr f+++fg+tP+e
  CTQ29965.1 215 LAAEANMSVSAFHHNFKAVTSTSPLQYLKNYRLHKARMLMIH-DGMKASAAAMRVGYESPSQFSREFKRYFGLTPGE 290
                 89**************************************97.********************************98 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.7   1.2e+04      18      26 ..      62      71 ..      60      73 .. 0.78
   2 !   35.6   0.1   1.6e-12     7e-09       1      42 []     202     243 ..     202     243 .. 0.97
   3 !   31.4   0.0   3.2e-11   1.5e-07      14      38 ..     264     289 ..     254     290 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.7
                TTS.SHHHHH CS
    HTH_AraC 18 lgf.SrsyFs 26
                 g+ ++++F+
  CTQ29965.1 62 IGYiNERTFR 71
                6898999996 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 1.6e-12
                 HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 +++++++nl+++++A+e+++S s F++ Fk++t  +P qy++
  CTQ29965.1 202 IESQYTENLSVDRLAAEANMSVSAFHHNFKAVTSTSPLQYLK 243
                 789*************************************96 PP

  == domain 3  score: 31.4 bits;  conditional E-value: 3.2e-11
                 HHHHTTS.SHHHHHHHHHHHSSS-HH CS
    HTH_AraC  14 iAdelgf.SrsyFsrlFkketGmtPs 38 
                  A+ +g+ S+s+Fsr Fk+++G tP 
  CTQ29965.1 264 AAMRVGYeSPSQFSREFKRYFGLTPG 289
                 69***********************6 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   6.8e-06      0.03      15      38 ..     208     231 ..     204     232 .. 0.94
   2 ?   -0.2   0.0       0.2   8.9e+02       2      16 ..     247     261 ..     247     266 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.8e-06
                 TT--HHHHHHHHTSSHHHHHHHTS CS
      TetR_N  15 dattvreIAkrAGvskgalYryFp 38 
                 ++++v+++A++A++s +a+++ F+
  CTQ29965.1 208 ENLSVDRLAAEANMSVSAFHHNFK 231
                 689********************7 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHTTT CS
      TetR_N   2 ldaArelfaerGyda 16 
                 l+ Ar+l+++ G+ a
  CTQ29965.1 247 LHKARMLMIHDGMKA 261
                 678*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2521.58
//
Query:       CTQ29966.1  [L=387]
Description: alcohol dehydrogenase, NAD(P)-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-94  317.2   0.1    1.4e-94  317.0   0.1    1.0  1  Fe-ADH        Iron-containing alcohol dehydrogenase
    3.8e-10   39.9   0.1    4.8e-06   26.5   0.0    2.3  2  Fe-ADH_2      Iron-containing alcohol dehydrogenase
    0.00044   19.5   0.1       0.17   11.0   0.0    2.7  3  DHQ_synthase  3-dehydroquinate synthase


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.0   0.1   2.3e-98   1.4e-94       1     345 [.       9     359 ..       9     372 .. 0.97

  Alignments for each domain:
  == domain 1  score: 317.0 bits;  conditional E-value: 2.3e-98
                 -SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHH CS
      Fe-ADH   1 PtrivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKa 99 
                 Ptri+fgkga+e+l e + +    r+li +++gs+kk+g+ld+v ++l  +g++v  f+g+epnp++e++++a++laree++ +++avGGGsv+D  K 
  CTQ29966.1   9 PTRILFGKGAIEKLREQIPAEA--RVLITYGGGSVKKTGVLDQVFTAL--NGLDVLEFGGIEPNPSYETLMNAVKLAREEKVTFLLAVGGGSVLDGTKF 103
                 9*****************9985..************************..************************************************* PP

                 HHHHTT.....................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHH CS
      Fe-ADH 100 ialllanp.e..vedylgegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEa 195
                 ia+ ++++ +  ++++l++  +k+ +a+p+  + T+++tGse ++ avi+ + +g k ++++ ++ P++ai+Dp +t+tlP+r++a++++Da++h +E+
  CTQ29966.1 104 IAAAAHYDaDidPWEILETYGSKIASAIPMGSVLTLPATGSESNKGAVISRKTTGDKRAFMSSHVQPQFAILDPVYTYTLPPRQVANGVVDAFVHTVEQ 202
                 *******966999999977778899*************************9999********************************************* PP

                 HHH.HT---TTSSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---...HHHHHHHHHHC.CGGGGGS-HHHHHHHHH........ CS
      Fe-ADH 196 yvs.kkanplsdalaleairliaknleravadgedleareqmllastlaglafsnaglg...avHalahalgalfgiphglanaillpavlrfnaeaap 290
                 yv+ + +  ++d++a+ ++ ++++  ++a++++e+++ r+++++a+t a +++  ag+    a+H+l+h+l+a++g++h +++ai+lpa ++  ++a++
  CTQ29966.1 203 YVTyPVDGKIQDRFAEGILLTLIEDGPKALQEPENYNVRANIMWAATQALNGLIGAGVPqdwATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDAKR 301
                 *******************************************************************************************99999999 PP

                 ..HHHHHHT..........T--HHHHHHHHHHHHHTT---SHHHHT-TT-HHHHHHHH CS
      Fe-ADH 291 erlaqlaralgge...sdeeaaeeliealrellkelglptsLselgvdeedldklaea 345
                 e+l q+a+ +++    sd+++ +++i+a r++++++g+pt+Ls++g+d + +++l ++
  CTQ29966.1 302 EKLLQYAERVWNItegSDDQRIDAAIAATRQFFEQMGVPTRLSDYGLDGSSIPALLAK 359
                 ***********99*************************************99998776 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     8e-10   4.8e-06       4      99 ..      16     109 ..      13     112 .. 0.73
   2 !   11.1   0.0   3.8e-05      0.23     101     239 ..     132     277 ..     126     285 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 8e-10
    Fe-ADH_2   4 egaleklgellkelelkkvllvaden.tkka.agekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsakln 99 
                 +ga+ekl+e +  +   +vl+ ++ + +kk+ + ++v  +l+  g++v  +   e++++ e+ ++ v+ +re+++++++avGgG+++D +k+++a ++
  CTQ29966.1  16 KGAIEKLREQIPAE--ARVLITYGGGsVKKTgVLDQVFTALN--GLDVLEFGGIEPNPSYETLMNAVKLAREEKVTFLLAVGGGSVLDGTKFIAAAAH 109
                 56666666655443..35555555542233236677777774..446666777999**************************************9887 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 3.8e-05
    Fe-ADH_2 101 pyvsvpTaaSvDGfaspgaslvvd..gkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwk.lanevseplaklsaamvqeaaek 195
                 p+ sv T ++  + +  ga + ++  g kr +  +   P   i+D     + P r +a Gv D+    + ++    +  ++++ +a+ +  ++ e   k
  CTQ29966.1 132 PMGSVLTLPATGSESNKGAVISRKttGDKRAFmSSHVQPQFAILDPVYTYTLPPRQVANGVVDAFVHTVEQYVTYpVDGKIQDRFAEGILLTLIEDGPK 230
                 5556666666666666666666655699999977788899999**********************9999988666366699999999999999999999 PP

    Fe-ADH_2 196 lvedkketealeelleal...alsgigisrpaSGsEHliSHaldmla 239
                 +++++++ ++ ++++ a    + ++ig  +p   + H++ H l +++
  CTQ29966.1 231 ALQEPENYNVRANIMWAAtqaLNGLIGAGVPQDWATHMLGHELTAMH 277
                 99999999999999988745355667779*************99887 PP

>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   2.8e-05      0.17      17      53 ..      72     108 ..      67     112 .. 0.83
   2 !    5.2   0.0    0.0016       9.8      90     121 ..     165     196 ..     156     205 .. 0.86
   3 ?   -2.6   0.0      0.41   2.4e+03     183     206 ..     267     287 ..     266     345 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.8e-05
                   HHHHHHHHHTT--TT-EEEEEESHHHHHHHHHHHHHB CS
  DHQ_synthase  17 ekildalleakleRksllialGGGvvgDlaGfvAaty 53 
                   e++++a+  a+ e+ + l+a+GGG v+D + f+Aa  
    CTQ29966.1  72 ETLMNAVKLAREEKVTFLLAVGGGSVLDGTKFIAAAA 108
                   56666777777788899*****************975 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0016
                   EEE---SEEEEEGGGGGGS-HHHHHHHHHHHH CS
  DHQ_synthase  90 GafaqPkavlidlevLktLperelraGlaEvi 121
                    +  qP++ ++d+ +  tLp+r++++G+ +++
    CTQ29966.1 165 SSHVQPQFAILDPVYTYTLPPRQVANGVVDAF 196
                   5789***********************98765 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.41
                   HHHHHHHHHHHTTTTS-HHHHHHH CS
  DHQ_synthase 183 HtigHaiEallgyekllHGeaVai 206
                   H +gH + a++g     H +  ai
    CTQ29966.1 267 HMLGHELTAMHGL---DHAQTLAI 287
                   6777777666665...55554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2932.06
//
Query:       CTQ29967.1  [L=275]
Description: 2,5-diketo-D-gluconate reductase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-51  172.9   0.0    2.8e-48  164.6   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.6   0.0   1.6e-52   2.8e-48       2     293 ..      18     261 ..      17     262 .. 0.94

  Alignments for each domain:
  == domain 1  score: 164.6 bits;  conditional E-value: 1.6e-52
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLg 98 
                   lglG w+ g+      ee++ ++++ale G++ fDtA +Y   q+e+ +G+al +++++r+e++i+tK+        ++  +++ +e+l+esl++L+
    CTQ29967.1  18 LGLGVWKAGN------EEVVSAIHKALEVGYRSFDTAAAY---QNETGVGNALHSAGVNRDELFITTKL--------WNDDQKRPHEALKESLSKLK 97 
                   8999999998......7***********************...**************************........566677789*********** PP

                   -S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGG CS
  Aldo_ket_red  99 tdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvpliaysplggG 195
                   +dyvDl+l+H+p p+   + e+++al el+++G+ ++iGv+nf+v +l+k+  + +v +v++q+e ++l  +++++l    + +++++  +spl++G
    CTQ29967.1  98 LDYVDLYLIHWPVPAIGHYVEAWQALIELQQQGLTKSIGVCNFQVPHLQKLIDETGVAPVINQIELHPL--MQQRQLHAWNATHKIQTESWSPLAQG 192
                   *********************************************************************..************************98 PP

                   TTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 196 lltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseeevaeldel 292
                         +                           + + +la ++g+++aq+++r+ l  + + +vip++ +++++ +n+d+++++l+++e+ ++++l
    CTQ29967.1 193 GEG---V------------------------FDQKVIHQLADKYGKTPAQIVIRWHL--DSGLVVIPKSVTPSRIAENFDVWDFRLDKDELGAIAKL 260
                   533...2........................12467899******************..***********************************997 PP

                   H CS
  Aldo_ket_red 293 l 293
                   +
    CTQ29967.1 261 D 261
                   5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2327.08
//
Query:       CTQ29968.1  [L=175]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-07   31.4   0.0    2.2e-07   31.1   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.4e-06   28.2   0.0    1.9e-06   27.8   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
     0.0018   18.6   0.0      0.003   18.0   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.031   14.4   0.0      0.039   14.1   0.0    1.2  1  Acetyltransf_4   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   4.9e-11   2.2e-07      26     114 ..      61     147 ..      26     150 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 4.9e-11
                     HHHHSTTCEEEEEEET.TEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHH CS
  Acetyltransf_1  26 esfsleaegllvaeed.geliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYek 114
                      +   + +g+++a +d ++ i+ + l   p  ++g+   + +++V    rg+G G++L +++++++ e g+  +++  + +n+ ++ +Y  
      CTQ29968.1  61 CY---DRGGIFFAFFDdEQMIAAAALDTLPRgMNGELRQLLFFYVGAGKRGQGWGRRLFQYALHQLPEMGASGLYI-SSIPNKNTVDFYLA 147
                     22...55566775555377************999999999*******************************99999.7789********55 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   4.3e-10   1.9e-06      19     110 ..      54     154 ..      39     158 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 4.3e-10
  Acetyltransf_10  19 pealrerieegealllvaeeggkivGvielrdgs........hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYek 103
                      +  ++e + +   ++++++++++++ +++l++          ++  ++V    rgqG g++L++++++++ ++g +   ++   +++ v+fY  
       CTQ29968.1  54 YTPIHEACYDRGGIFFAFFDDEQMIAAAALDTLPrgmngelrQLLFFYVGAGKRGQGWGRRLFQYALHQLPEMGASGlYISSIPNKNTVDFYLA 147
                      46778888777788999999999999997744434567889899999***********************99*99956666666669******* PP

  Acetyltransf_10 104 lGFkavg 110
                      +G +  +
       CTQ29968.1 148 QGCRLAD 154
                      **98765 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   6.7e-07     0.003       5      73 ..      68     149 ..      63     149 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 6.7e-07
                     EEEEEETTEEEEEEEEEEES.......TCTEEEEE-GGGTTSSHHHHHHHH...TT.....SEEEEEEEEETHHHHHHHHHHTT CS
  Acetyltransf_7   5 vfVaeddgkivGfialslld.......aeitrlaVdpeyrgkGiGraLlea...ae.....kgiileqlelnaekaikfYeklG 73 
                     +f   dd++ +  +al  l         ++ +++V    rg+G Gr+L ++   +      +g+ ++     ++++++fY   G
      CTQ29968.1  68 FFAFFDDEQMIAAAALDTLPrgmngelRQLLFFYVGAGKRGQGWGRRLFQYalhQLpemgaSGLYIS--SIPNKNTVDFYLAQG 149
                     554455556665554444446665333344449*****************74441144344553323..222225588998776 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   8.7e-06     0.039      47     136 ..      64     152 ..      26     159 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.7e-06
  Acetyltransf_4  47 ekeyvflvaesdrivGyaylgqfkkr.akdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFel 136
                      + ++f  ++++++++ a+l  +      +   +l++y+    ++ +g gr l ++    l e++   l+++ + pn+n ++f+ a G +l
      CTQ29968.1  64 RGGIFFAFFDDEQMIAAAALDTLPRGmNGELRQLLFFYVG-AGKRGQGWGRRLFQYALHQLPEMGASGLYISSI-PNKNTVDFYLAQGCRL 152
                     56799****************66654466677899****7.679****************************99.*********9988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1341.00
//
Query:       CTQ29969.1  [L=727]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-145  484.0   0.0   2.1e-145  483.6   0.0    1.2  1  Radical_SAM_N    Radical SAM N-terminal
      8e-44  149.6   0.7    1.5e-43  148.7   0.7    1.4  1  DUF3362          Domain of unknown function (DUF3362)
      3e-20   73.3   0.1    7.7e-20   71.9   0.1    1.8  1  Radical_SAM      Radical SAM superfamily
     0.0047   17.0   0.0        1.8    8.6   0.0    2.7  2  B12-binding      B12 binding domain
  ------ inclusion threshold ------
      0.063   13.5   0.0       0.12   12.6   0.0    1.3  1  Helitron_like_N  Helitron helicase-like domain at N-terminus


Domain annotation for each model (and alignments):
>> Radical_SAM_N  Radical SAM N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  483.6   0.0  5.9e-149  2.1e-145       1     298 []      29     379 ..      29     379 .. 0.97

  Alignments for each domain:
  == domain 1  score: 483.6 bits;  conditional E-value: 5.9e-149
  Radical_SAM_N   1 flpvsrkemeergwdelDvilvsgDaYvDhpsfgaaligrlLeaeGfrvgiiaqPdwksaedfkklGkPrlffgvsaGnlDsmvnkytaekklrsd 96 
                    flp+sr+em+++gwd++D+ilv+gDaYvDhpsfg+a+ gr+Lea+Gfrvgii+qPdw+s++df++lGkP+lffgv+aGn+Dsm+n+yta++klr+d
     CTQ29969.1  29 FLPMSREEMDQLGWDSCDIILVTGDAYVDHPSFGMAICGRMLEAQGFRVGIISQPDWNSKDDFMRLGKPNLFFGVTAGNMDSMINRYTADRKLRHD 124
                    9*********************************************************************************************** PP

  Radical_SAM_N  97 DaytpggkagkRPdravivYsnlireaykdvpvvlGgiEaSLRriahYDywsdkvrrsilldskadllvyGmgeraiveiakrlakgeeveelkdi 192
                    Dayt g+ agkRPdra++vY+++++ea+kdvpv+lGgiEaSLRr ahYDywsd+vrrs+l+dskad+l++G+ger++ve+a+rla ge++++++d+
     CTQ29969.1 125 DAYTAGNVAGKRPDRATLVYTQRCKEAWKDVPVILGGIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGETIDQIRDV 220
                    ************************************************************************************************ PP

  Radical_SAM_N 193 rgtavllk.....................................................keakakekevielpsyeevkedkklyaeafrllee 235
                    r+ta+++k                                                      + k  ek+++ lps+e+vk dk+lya+a+r+l++
     CTQ29969.1 221 RNTAIMVKealpgwsgvdstrldtpgkidpiphpygedlpcadnkpvapkkqeaksitvqpPRPKPWEKTYVLLPSFEKVKGDKVLYAHASRILHH 316
                    *****99999***************************************999988776533122333479************************** PP

  Radical_SAM_N 236 etnplnakalvqkhgdravvlnppalplsteelDevyelpyarkahpsykkkkipalemikfS 298
                    etnp+ a+al+qkhg+r++++nppa+plstee+D+v++lpy+r +hpsy +++ipa+emi+fS
     CTQ29969.1 317 ETNPGCARALMQKHGERYIWINPPAIPLSTEEMDSVFALPYKRVPHPSYGDARIPAYEMIRFS 379
                    **************************************************************8 PP

>> DUF3362  Domain of unknown function (DUF3362)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.7   0.7   4.1e-47   1.5e-43       1     115 [.     594     710 ..     594     726 .. 0.76

  Alignments for each domain:
  == domain 1  score: 148.7 bits;  conditional E-value: 4.1e-47
     DUF3362   1 dqVqtFyPsPmatattmYhtgknpltkvkreeesvdvvrgekerrlhkAllrYhdpknwpllreALkkmGredLiGngkkhLiptfqpk..vdgkdsrq 97 
                 dqVq+FyPsP a++ttmY+tgknpl k+  ++e+v v++g+k+rrlhkAllrYhdp+nwpl+r+AL++mG+++LiG  + +L+p+ +    ++++ +++
  CTQ29969.1 594 DQVQNFYPSPLANSTTMYYTGKNPLGKIGYKSEEVVVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLVPAPTLDemREARRQNR 692
                 9**********************************************************************************9866552133322222 PP

     DUF3362  98 sarrknskagkdaakras 115
                 + r + +k++  a +r++
  CTQ29969.1 693 HTRPALTKHTPIAHQRQT 710
                 222222222222222222 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.1   2.2e-23   7.7e-20       1     166 [.     380     585 ..     380     586 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 2.2e-23
                  EEEESEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHH.HHTT.SEEEEEESSTGGGS.................................TTH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxx.................................xxx RF
  Radical_SAM   1 vvvtrgCnlrCsfCarpetvrregrgrslsveeileevkelk.aekg.vkevilgggeplly.................................pdf 63 
                  ++++rgC ++CsfC+++e+   ++  +s+s ++i++e+++++   +g ++++  +gg p+++                                  + 
   CTQ29969.1 380 INIMRGCFGGCSFCSITEH--EGRIIQSRSEDSIINEIEAIRdTVPGfTGVISDLGG-PTANmymlrckspraeqtcrrlscvypdicphmdtnhEPT 474
                  689***************8..**********************99999*********.************************************9999 PP

                  HHHHHHHHHTCCCTEEEEEEECSSCHG.....HHHHHHHHHTT.-SEEEEEEBSSSHHHHHHHHT.CTSHHHHHHHHHHHHHHTTSET...EEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx...xxxxxxx RF
  Radical_SAM  64 vellerlaklavpgiritvetngtlpd.....eeklerllelg.vdrvslgleaaddekvlklmn.rghtfeevlealeklreagikr...vvdrivg 151
                  + l++r+++l  +gi+  ++++g++ d     ++++++l+  +   ++ +  e++ + +  k+m+ +++++++++e+++++ +  +k+   + ++i  
   CTQ29969.1 475 INLYRRAREL--KGIKKILIASGVRYDiavedPRYIKELATHHvGGYLKIAPEHTEEGPLSKMMKpGMGSYDRFKELFDTYSKQAGKEqylIPYFISA 570
                  9999999999..7****************88888888888888888899999999999***************************999********** PP

                  BTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxx RF
  Radical_SAM 152 lpGendeeleellel 166
                  +pG  de++++l+ +
   CTQ29969.1 571 HPGTRDEDMVNLALW 585
                  *********999876 PP

>> B12-binding  B12 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00051       1.8       5      34 ..      51      80 ..      47      96 .. 0.81
   2 !    5.5   0.0    0.0046        17      72      96 ..     145     169 ..     138     205 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00051
  B12-binding  5 latvggdlhplGlavlaaalrdagfeVqll 34
                  + ++ d++++G+a+  ++l+++gf+V ++
   CTQ29969.1 51 TGDAYVDHPSFGMAICGRMLEAQGFRVGII 80
                 566789*********************988 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0046
  B12-binding  72 vellkrirprvkvvvGGahpsldpe 96 
                  +++ k++ ++v+v++GG+ +sl   
   CTQ29969.1 145 TQRCKEAWKDVPVILGGIEASLRRT 169
                  56679999**********9988655 PP

>> Helitron_like_N  Helitron helicase-like domain at N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.3e-05      0.12     106     172 ..      93     165 ..      91     171 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.3e-05
  Helitron_like_N 106 elgkPdlFiTltcndkwpeikeel........rkkkkaqt......aadrpdivarvFhrkleaflkdllkegvfGkvsay 172
                      +lgkP+lF+ +t+  +   i + +        +             a +rpd +  v+ +++++  kd+    ++G ++a 
       CTQ29969.1  93 RLGKPNLFFGVTAGNMDSMINRYTadrklrhdD------AytagnvAGKRPDRATLVYTQRCKEAWKDV--PVILGGIEAS 165
                      79********************99765444333......1556666**********************9..6788887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 5505.74
//
Query:       CTQ29970.1  [L=470]
Description: repressor protein for FtsI [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-24   83.8   0.2    3.5e-23   81.9   0.1    2.0  2  Cu-oxidase_3  Multicopper oxidase
    7.8e-13   48.3   0.0    1.5e-12   47.4   0.0    1.4  1  Cu-oxidase_2  Multicopper oxidase
     0.0016   18.2   1.5     0.0033   17.2   1.5    1.6  1  TAT_signal    TAT (twin-arginine translocation) pathway signa
     0.0017   18.5   0.0     0.0035   17.5   0.0    1.4  1  Cu-oxidase    Multicopper oxidase


Domain annotation for each model (and alignments):
>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.1   7.8e-27   3.5e-23       2     117 ..      52     166 ..      51     168 .. 0.96
   2 ?   -1.0   0.0      0.39   1.8e+03      46      77 ..     391     416 ..     362     468 .. 0.58

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 7.8e-27
                   EEEEEEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-SSS-B-EEEET--S-GG.....GSCSGGG-B-TT-EEEEEEE--S-SEEEEEEE CS
  Cu-oxidase_3   2 vtektvsplggterevitvNgqfpgptievregdtvvvnvtNkldentsihwhGlqqrktswmDGvpgvtqcpiqpgesftyrftvkqqagtlwYhs 98 
                   ++++++s++ gt+++v+++Ng+++gpti+v +gd+v++ ++N+l+en+++++ Glq+++      + g++ ++++p++++ + ++++q+a+tlwY +
    CTQ29970.1  52 LQRSHWSFTPGTRAPVWGINGRYMGPTIRVWNGDDVKLIYSNRLTENVAMTIRGLQVPGP-----LIGGAARMMSPNADWAPVLPIRQSAATLWYQA 143
                   578999******************************************************.....99****************************** PP

                   --TT...HHH.TT-EEEEEEE-H CS
  Cu-oxidase_3  99 hlsl...qqa.aGlaGaiiiedk 117
                   ++ +   +q+ +GlaG++++ed+
    CTQ29970.1 144 NTPNrmaKQVyNGLAGMWLVEDE 166
                   *9998887778*********997 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.39
                   SS-B-EEEET--.S-GG.....GSCSGGG-B-T CS
  Cu-oxidase_3  46 dentsihwhGlq.qrktswmDGvpgvtqcpiqp 77 
                   d++ s h++G+  q ++     v+g  + p + 
    CTQ29970.1 391 DRPQSFHIEGVMfQIRN-----VNG--SSPFPE 416
                   55555555554302233.....333..333333 PP

>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   3.3e-16   1.5e-12      23     135 ..     359     468 ..     342     470 .] 0.84

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 3.3e-16
                   E.....ETCCTTTSSEEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES..S-EE. CS
  Cu-oxidase_2  23 t.....ngeefsentnvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfka.dnpGv. 112
                         ng+ +++++ +it+++g+++++++ ++ +  ++fH++G+ fq+ + ++++        +  e+ +++dtv+v+++ ++ +++++  +p+  
    CTQ29970.1 359 GddpgiNGQLWDPQRIDITAQQGTWERWTVRADRP--QSFHIEGVMFQIRNVNGSS-------PF-PEDRGWKDTVWVDGQVELLVYYAQpSWPHFp 445
                   0333459*************************998..5***********9666666.......22.399***************9997774699988 PP

                   EEEEESSHHHHHTT-EEEEEEEC CS
  Cu-oxidase_2 113 wllHCHilwHldqGmalqfvvrp 135
                   + + ++ l+ +d+G  +q++v+p
    CTQ29970.1 446 FQYLSQTLELADRGSIGQMLVNP 468
                   ********************997 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.5   7.3e-07    0.0033       2      19 ..       3      21 ..       2      29 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7.3e-07
  TAT_signal  2 lSRRdFLKgsAAaa.AAaa 19
                lSRR+F+K+s++a  A+aa
  CTQ29970.1  3 LSRRQFIKASGVALcAGAA 21
                8*********888778887 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.9e-07    0.0035      70     126 ..     229     287 ..     195     302 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.9e-07
                 EEEEEEEESSS-BEEEEE.TSB-EEEEEETCETTS.EEEESCEEE-TTEEEEEEEEE-S CS
  Cu-oxidase  70 yrlriinvsaddslnfsI.eGHkltVvevDgvyve.pvevdsldIavGqrysvlvtanq 126
                 +rlr+ n+s+   +++++ +G  l V+ +D  +   pv++++l +a+G+r ++lv++++
  CTQ29970.1 229 VRLRLLNASNSRRYQLQMsDGRLLHVISGDQGFLPaPVSLKQLSLAPGERREILVDMTN 287
                 8***************994567899*********99********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       243  (0.0135535); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3390.51
//
Query:       CTQ29971.1  [L=245]
Description: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-32  110.5   0.0    6.7e-32  109.9   0.0    1.2  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9   0.0   3.7e-36   6.7e-32       9     135 .]      60     180 ..      52     180 .. 0.95

  Alignments for each domain:
  == domain 1  score: 109.9 bits;  conditional E-value: 3.7e-36
  Acyltransferase   9 nlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegkl.vviFPEG 101
                        ++ g+ai++aNHq ++D+++ ++++     ++++v+++kk+ll+ip++g+l++l+g   idR+++ +a+g+++++++++++ k+  ++FPEG
       CTQ29971.1  60 DAESYGNAIYIANHQNNYDMVTASNIV-----QAPTVTVGKKSLLWIPFFGQLYWLTGNLLIDRNNRTKAHGTIAEVVNAFKKRKIsFWMFPEG 148
                      455679*********************.....8************************************************************* PP

  Acyltransferase 102 trsregellpfkkGlvrlaakakkgvpivPvais 135
                      trsr ++llpfk+G++++a+ a  gvpi+Pv++s
       CTQ29971.1 149 TRSRGRGLLPFKTGAFHAAIAA--GVPIIPVCVS 180
                      **********************..*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1885.89
//
Query:       CTQ29972.1  [L=752]
Description: DNA topoisomerase IV, subunit A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.7e-134  448.9   0.0     2e-134  448.7   0.0    1.0  1  DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
    5.7e-15   54.5   0.0    7.2e-08   31.8   0.0    3.0  2  DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller
  ------ inclusion threshold ------
      0.024   15.1   0.8      0.076   13.5   0.8    1.8  1  DUF4890        Domain of unknown function (DUF4890)
       0.26   11.3   5.7       0.65   10.0   5.7    1.7  1  SWIRM-assoc_1  SWIRM-associated region 1


Domain annotation for each model (and alignments):
>> DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  448.7   0.0  4.5e-138    2e-134       1     425 [.      29     465 ..      29     466 .. 0.97

  Alignments for each domain:
  == domain 1  score: 448.7 bits;  conditional E-value: 4.5e-138
  DNA_topoisoIV   1 RaiPsvrDGlKPvqRriLyamfkl.lnldkkekKvaqlvGevlgkYhPHGdaslydaivrlaqdfvgniplldpqGnfGsildgdkd.AaaRYiet 94 
                    Ra+P + DGlKPvqRri+yam++l ln++ k+kK+a++vG+vlgkYhPHGd+++y+a+v +aq f++++pl+d+qGn+G   d+ k+ Aa+RY+e 
     CTQ29972.1  29 RALPFIGDGLKPVQRRIVYAMSELgLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP-DDPKSfAAMRYTES 123
                    9********************************************************************************.888889******** PP

  DNA_topoisoIV  95 rLskiarellkeidketvdyqenyDgsekEPevlppiiPnlLvnGaeGIavGmatkipphnlkeiidaliallkgeea...ellelvlgPdfptgg 187
                    rLsk+a+ ll+e+ + tvd+++n+Dg+ +EP++lp+++Pn+L+nG++GIavGmat+ipphnl+e+ +a+i l++++++   ell++v+gPdfpt +
     CTQ29972.1 124 RLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKTtldELLDIVQGPDFPTEA 219
                    ****************************************************************************999999************** PP

  DNA_topoisoIV 188 gii.gkeeikeayetgrGkikvrakveieektivitElPigvntskliekieelvkkkkik.isdirdesdr..gvrivielkr.gaseekvlekl 278
                    +ii +++ei++ y++grG++++ra +++e+ ++vi+ lP +v+ +k+ e+i++ +++kk+  + d+rdesd+   +r+vi  ++ +++ e+v+++l
     CTQ29972.1 220 EIItSRAEIRKIYQNGRGSVRMRAVWSKEDGAVVISALPHQVSGAKVLEQIAAQMRNKKLPmVDDLRDESDHenPTRLVIVPRSnRVDMEQVMNHL 315
                    9998999********************999***************************************7766889999998776899******** PP

  DNA_topoisoIV 279 ykktkLessisvnnlvlfdk.kpkylslkeilkeflevrlevyerrkeyllekleerleilegllkalnkidevievirkskkekkakkeLiee.. 371
                    +++t+Le+s+++n++++  + +p +++l eil+e+l +r+++++rr++++lek+ +rl+ilegll+a+ +idevie+ir++   ++ k +L+++  
     CTQ29972.1 316 FATTDLEKSYRINLNMIGLDgRPAVKNLLEILSEWLVFRRDTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTE---DEPKPALMSRfg 408
                    *************988877758**********************************************************9...56999*****9* PP

  DNA_topoisoIV 372 lseeqaeyllemrlrrLtkeeveklekeieelekeikelekllak...lkklikeel 425
                    +se+qae++le++lr+L+k+e++k++ e++eleke ++l+++la+   +++l+k+el
     CTQ29972.1 409 ISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASerkMNNLLKKEL 465
                    ********************************************9888889998887 PP

>> DNA_gyraseA_C  DNA gyrase C-terminal domain, beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     1e-07   0.00047       2      41 ..     593     630 ..     592     637 .. 0.91
   2 !   31.8   0.0   1.6e-11   7.2e-08       1      47 [.     641     692 ..     641     693 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1e-07
                    EEEEEETTSEEEEEEGGGS-BT-TTSCTEEGSETTTTSSE CS
  DNA_gyraseA_C   2 ellliTsnGyvkrfplselpeqgRgakGvkgiklkegdkl 41 
                    +ll+++++Gy++ +  ++l + +R+  G+ +i+l ++ ++
     CTQ29972.1 593 KLLMASDAGYGFVCTFNDLVARNRA--GKALITLPDNAHV 630
                    79***********************..*********9877 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 1.6e-11
                    SEEEEEETTSEEEEEEGGGS-BT-TTSCTEEGS.....ETTTT.SSEEEEEEE CS
  DNA_gyraseA_C   1 dellliTsnGyvkrfplselpeqgRgakGvkgi.....klkeg.dklvsvlvv 47 
                    d+ll iT +G+++ fp+s+lp++++g kG+k+i         g d l +++v+
     CTQ29972.1 641 DMLLAITAAGRMLMFPVSDLPQLSKG-KGNKIIsipaaEAAAGqDGLAHLFVL 692
                    89************************.******77777666666777777665 PP

>> DUF4890  Domain of unknown function (DUF4890)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.8   1.7e-05     0.076      25      94 ..     404     472 ..     397     482 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
     DUF4890  25 vkeYsLnetqkkqLlElNlalvekmgdrpmrlkrdakrkkdkrdrkkaq.atkkeerekkrkemkaareaY 94 
                   +++++etq + +lEl l+ + k++++  r ++ + +k++  d+ +a+ a +++  +  +ke++a+ +a+
  CTQ29972.1 404 MSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKER--DQLQAIlASERKMNNLLKKELQADADAF 472
                 56799*********************998888887777776..4444441555555556778899888876 PP

>> SWIRM-assoc_1  SWIRM-associated region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.7   0.00015      0.65      37      66 ..     418     448 ..     408     466 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00015
  SWIRM-assoc_1  37 lelKLkqfeelEkl.leaerrelekqrqqLl 66 
                    lelKL+++++lE++ ++ e+ elek+r qL 
     CTQ29972.1 418 LELKLRHLAKLEEMkIRGEQSELEKERDQLQ 448
                    8************96788***********94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5234.22
//
Query:       CTQ29973.1  [L=289]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-36  123.7   0.0    1.4e-35  122.9   0.0    1.4  1  GyrI-like  GyrI-like small molecule binding domain
    5.4e-22   77.9   0.9    1.3e-21   76.6   0.9    1.7  1  HTH_18     Helix-turn-helix domain
    1.1e-14   54.0   0.1    4.3e-07   29.9   0.0    2.6  2  HTH_AraC   Bacterial regulatory helix-turn-helix proteins, Ar
      2e-09   37.8   0.0    4.2e-09   36.7   0.0    1.6  2  Cass2      Integron-associated effector binding protein


Domain annotation for each model (and alignments):
>> GyrI-like  GyrI-like small molecule binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.0     3e-39   1.4e-35       1     154 [.     135     288 ..     135     289 .] 0.99

  Alignments for each domain:
  == domain 1  score: 122.9 bits;  conditional E-value: 3e-39
                 .CEEEEEE--EEEEEEEEEEEHCCCHHHHHHHHHHHHHHHHHHCTT.--SSEEEEEEEEE-STTCCCEEEEEEEECCCCC.CGBTTSEEEEE-SEEEEE CS
   GyrI-like   1 meveivelpafrvvgirhrgdyneeggipklweelyawaseiklsn.avspligvssdepeetedeelkydigvtveirv.egpeglefleipageyAv 97 
                 m+v i+  p +r++ ++hrg++     ++++ +++ aw+++ +ls+ a+s + g+ +d+p++t++e +++di+ tv+ +v e+  g+++ eip+g++Av
  CTQ29973.1 135 MDVNIISCPSTRIAVLQHRGSPDL---VNATAARFIAWRKTSGLSPvATSDTWGIAWDDPQTTPQEAFRFDICGTVDRPVgENAFGVINGEIPGGRCAV 230
                 899*********************...************************************************************************ PP

                 EEEECEGGGHHHHHHHHHHTHHHHTT-EEEESEEEEEEECCCTS.SCGCEEEEEEEEE CS
   GyrI-like  98 frhkGpyddlqatyaklygewlpesgyerrdgpsiEiYlsdpre.reeelkteiyipv 154
                 +rh+G+ d+l+++++ ly++wlp+sg  +rd p++ +Yl+  +e  e+el+t+iy+p+
  CTQ29973.1 231 VRHHGSLDTLANSVWFLYRDWLPASGETLRDFPVYFRYLNFVHEvAEHELQTDIYLPL 288
                 *********************************************************8 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.9   2.9e-25   1.3e-21       1      81 []      34     114 ..      34     114 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 2.9e-25
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrrr 81 
                 l+a ++ s+ +++r+f +++g++ ++y+++lRl+rA+ +L+ n+ ++v +iAl++GF+++ +Fsrafr +f ++P+++r++
  CTQ29973.1  34 LSAIAHSSPYHFHRQFSAYTGIPLYRYIQWLRLRRACWRLAFNPRDKVIDIALDAGFQNAESFSRAFRTAFDQSPTQFRQQ 114
                 578899**********************************99*************************************85 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.1e-08   0.00019       1      35 [.      21      55 ..      21      55 .. 0.95
   2 !   29.9   0.0   9.7e-11   4.3e-07      10      42 .]      80     113 ..      76     113 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 4.1e-08
                HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS CS
    HTH_AraC  1 LrenlstnltiediAdelgfSrsyFsrlFkketGm 35
                ++ +l+++l++e +++ ++ S+++F+r+F+++tG+
  CTQ29973.1 21 IARHLDEPLSLETLSAIAHSSPYHFHRQFSAYTGI 55
                67899*****************************6 PP

  == domain 2  score: 29.9 bits;  conditional E-value: 9.7e-11
                 -HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC  10 tiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 ++ diA  +gf +   Fsr+F+ +++++P+q+r+
  CTQ29973.1  80 KVIDIALDAGFqNAESFSRAFRTAFDQSPTQFRQ 113
                 799*****************************97 PP

>> Cass2  Integron-associated effector binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       3.1   1.4e+04      52      71 ..      36      56 ..      32      59 .. 0.77
   2 !   36.7   0.0   9.4e-13   4.2e-09       2     149 .]     139     288 ..     138     288 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3.1
                EEEEC-TT.-CCGEEEEEEEE CS
       Cass2 52 giyhdyes.eenkfsyyagve 71
                +i h++++   ++fs y+g++
  CTQ29973.1 36 AIAHSSPYhFHRQFSAYTGIP 56
                577888888888899888887 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 9.4e-13
                 EEEE--EEEEEEEEETTCCCCH...HHHHHHHHHHHHHHHCTTSBS..TEEEEEEEC-TT..-CCGEEEEEEEEE-TT.SSS-TT-EEEEE--EEEEEE CS
       Cass2   2 IvelpeftvaGiryegskeeedlnkeigklwreflekgrlkkikkd..krvfgiyhdyes..eenkfsyyagvevpsd.sevpeglvkkeiPggkYavf 95 
                 I++ p+ ++a ++++gs +        +    +f+++ +   +++   ++++gi  d ++  +++ f++ ++ +v+    e+  g++  eiPgg++av+
  CTQ29973.1 139 IISCPSTRIAVLQHRGSPDLV------NATAARFIAWRKTSGLSPVatSDTWGIAWDDPQttPQEAFRFDICGTVDRPvGENAFGVINGEIPGGRCAVV 231
                 899999999999999998888......477889999998888877778***********999**************96677777778889********* PP

                 EEESSSTT-HHHHHHHHHHCHCCHCTEEE-SSE....EEEEE...STTHHHTEEEEEEEEE CS
       Cass2  96 tiegdfeedlaeaweaiygellpnsnyerrggp....dfEvy...keepaekseielyIPv 149
                  ++g++++ la+++  +y  +lp+s+++ r+ p    +       +e  + + + ++y P+
  CTQ29973.1 232 RHHGSLDT-LANSVWFLYRDWLPASGETLRDFPvyfrY---LnfvHEVAEHELQTDIYLPL 288
                 *******9.******************98665544442...144344444499*****995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       313  (0.0174578); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2321.10
//
Query:       CTQ29974.1  [L=131]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-41  138.8   1.4    6.6e-41  138.5   1.4    1.1  1  BOF       Bacterial OB fold (BOF) protein


Domain annotation for each model (and alignments):
>> BOF  Bacterial OB fold (BOF) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   1.4   3.7e-45   6.6e-41       1     103 []      25     128 ..      25     128 .. 0.96

  Alignments for each domain:
  == domain 1  score: 138.5 bits;  conditional E-value: 3.7e-45
                 ---S----.----------------HHHHTTS-SSEEEEEEEEEEEEEETTEEEEEETTEEEEEE--GGGSTT----TTSEEEEEEEEEEETTEEEEEE CS
         BOF   1 gfkapsat.qaiegGfrganakvttvkaAlsaaDdasvslrGnivkriddDeyvFrDasGeikveiddrvfnglevqpkdkvkiqGkvDkelekaeidv 98 
                 gf++ps+t  +++gGf g++++vttv  A+s++Dd++v+lrG+iv+ri+dD y F+DasG i+v+id++++ng++v p+d+v+iqG+vDk+++++eidv
  CTQ29974.1  25 GFTGPSTTtTTQAGGFTGPSGAVTTVANAKSLRDDTWVTLRGKIVERISDDLYKFQDASGVINVDIDHKRWNGVTVGPQDTVEIQGEVDKDWNSVEIDV 123
                 78999876156889************************************************************************************* PP

                 EEEEE CS
         BOF  99 kkiek 103
                 k+i+k
  CTQ29974.1 124 KQIRK 128
                 ***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1171.86
//
Query:       CTQ29975.1  [L=219]
Description: DNA-binding response regulator in two-component regulatory system with QseC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.2e-23   80.1   0.1      2e-22   79.1   0.1    1.6  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
    2.9e-21   75.7   0.0    3.9e-21   75.3   0.0    1.2  1  Response_reg  Response regulator receiver domain
  ------ inclusion threshold ------
      0.097   12.6   2.1        1.8    8.6   0.4    3.3  3  RHH_1         Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.1   3.3e-26     2e-22       1      77 []     145     216 ..     145     216 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 3.3e-26
                  TEEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   1 geeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  ge+++l+pkef+lLelL++n+grv++r+ + e+++  d++v++++v+vh+++LR+kL+      ++I+tv+g+GY l
   CTQ29975.1 145 GESLALKPKEFALLELLMRNAGRVLPRKLIEEKLYTWDDEVSSNAVEVHVHHLRRKLGS-----DFIRTVHGIGYTL 216
                  67899******************************************************.....8**********86 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0   6.6e-25   3.9e-21       1     111 [.       3     112 ..       3     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 6.6e-25
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l+v+Dd+l+ ++++  l + g+ +++ ++ g e  + l +  +d  +lD+ +pg+dGl++l+e r++ ++ pv+ilta+++ +++ve+l++gadd+
    CTQ29975.1   3 ILLVEDDKLIGDGIKAGLSKMGF-SIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGLDILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDY 98 
                   89*********************.************************************************************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l Kpf+  e+ ++l
    CTQ29975.1  99 LCKPFALIEVAARL 112
                   *****998887766 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.065   3.9e+02      12      27 ..      58      73 ..      57      78 .. 0.89
   2 ?   -1.8   0.0       0.6   3.6e+03      30      38 ..      81      89 ..      79      89 .. 0.88
   3 ?    8.6   0.4    0.0003       1.8       9      28 ..     107     127 ..     107     127 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.065
                HHHHHHHHHHTSSHHH CS
       RHH_1 12 erLdelarrrgrSrSe 27
                + Ld l+++r++ r+e
  CTQ29975.1 58 DGLDILREWRDKGRHE 73
                679999*******998 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.6
                HHHHHHHHH CS
       RHH_1 30 ReAlreyle 38
                R+Al +++e
  CTQ29975.1 81 RDALSQRVE 89
                99**99986 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0003
                 HHHHHHHHHHHHHT.SSHHHH CS
       RHH_1   9 ellerLdelarrrg.rSrSel 28 
                 e+++rL++l+rr + +S Sel
  CTQ29975.1 107 EVAARLEALIRRAHgQSSSEL 127
                 689****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      215  (0.0119917); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1937.51
//
Query:       CTQ29976.1  [L=449]
Description: sensory histidine kinase in two-component regulatory system with QseB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-18   66.1   0.0    5.7e-18   65.4   0.0    1.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    5.1e-13   48.9   1.6    1.5e-12   47.4   1.6    1.9  1  HisKA        His Kinase A (phospho-acceptor) domain
    5.9e-05   23.2   0.3    0.00026   21.1   0.2    2.1  2  2CSK_N       Two-component sensor kinase N-terminal
  ------ inclusion threshold ------
      0.024   14.5   0.0      0.044   13.6   0.0    1.4  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like
       0.13   12.7   0.1        1.3    9.4   0.0    2.2  2  DUF3232      Protein of unknown function (DUF3232)
       0.13   12.2   0.0        1.1    9.3   0.0    2.1  1  HATPase_c_5  GHKL domain


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   1.9e-21   5.7e-18       6     105 ..     353     446 ..     348     449 .] 0.88

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 1.9e-21
                 HHHHHHHHHHHHHHHHSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHTGTCSTTCH..HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEE CS
   HATPase_c   6 LrqiisnlvdNavkfatkageieveikaseddlvisveDnGiGipkedlkklfekfsq..ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGt 102
                 L  +++nl+dNav++++ +++++++++      +++v+DnG+Gi+++ l +++e+f++       ++  g+GlGlsiv+++++l+g ++ + +  ++G 
  CTQ29976.1 353 LSLLVRNLLDNAVRYSPRGSQVDITLN----AREFRVRDNGPGISPQALSRIGERFYRppG----QEAPGSGLGLSIVRRIASLHGMQVDFANARDGGF 443
                 7789***********99**********....788************************432....5678*********************988887776 PP

                 EEE CS
   HATPase_c 103 tft 105
                 + +
  CTQ29976.1 444 EAR 446
                 655 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   1.6     5e-16   1.5e-12       3      66 ..     238     301 ..     236     302 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 5e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 +rf+++ aHELr PL+a++  +e+ + + + +e  +++l++++++++r ++lv++lL+lsr+++
  CTQ29976.1 238 RRFTSDAAHELRSPLAALKVQTEVAQLSLDDPEGREKALDQLHQGIDRATRLVDQLLTLSRLDS 301
                 89**********************9776445699999*************************96 PP

>> 2CSK_N  Two-component sensor kinase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.2   8.7e-08   0.00026       3     139 .]      23     159 ..      21     159 .. 0.78
   2 ?   -4.0   0.0       4.8   1.4e+04      35      59 ..     361     385 ..     353     390 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 8.7e-08
      2CSK_N   3 lllllslaltyrvarsaaneayDraLlasaralaeqvrved.gelevdlppaalellesdaedrvyyqVsdadgrllaGdadl.plpp.a.aeprfyda 97 
                 + + ++++++++++ +  ++ +D + l  ar l+    +++  ++ ++l +       + ++d + +++ ++dg++++ d +     + + ++ +f+d+
  CTQ29976.1  23 AAWGMASVIAWQQTSKKLDKLFDTQQLLFARRLSVMH-FDElRAPPASLGEKKKVRHGHIDDDALAFAIFTRDGKMVLNDGENgEDIQwNsQREGFSDG 120
                 6799999999999999999999999999999997433.33213344455444444444679********************995333364499****** PP

      2CSK_N  98 eyrge..pvRvaalarplagagrgpvlVqVAetlekRdalarei 139
                  +r++  ++R + l+     +  g+++++V++  + R+++a +i
  CTQ29976.1 121 YLRDDddEWRFLWLTTA---D--GRYRIAVGQEWDYRREMAMDI 159
                 **654449******666...3..*****************9887 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 4.8
      2CSK_N  35 laeqvrvedgelevdlppaalelle 59 
                 l + vr      +vd++  a+e+  
  CTQ29976.1 361 LDNAVRYSPRGSQVDITLNAREFRV 385
                 4556666555578888888877755 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.5e-05     0.044       9      53 ..     359     400 ..     354     431 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.5e-05
  HATPase_c_3   9 elvdNsld..AdaenvkievnknrgktgeivieDdGkGmseeelkna 53 
                   l+dN++    +  +v+i++n +     e++++D+G G+s++ l + 
   CTQ29976.1 359 NLLDNAVRysPRGSQVDITLNAR-----EFRVRDNGPGISPQALSRI 400
                  688888664477788******96.....7*************99884 PP

>> DUF3232  Protein of unknown function (DUF3232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.21   6.3e+02      61      86 ..     214     239 ..     205     247 .. 0.87
   2 ?    9.4   0.0   0.00043       1.3      76     124 ..     278     326 ..     245     330 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
     DUF3232  61 eelkelveelDrsRrlahnslisslk 86 
                  e + lve l++  r +h++++++ +
  CTQ29976.1 214 AEVRPLVEALNQLFRRTHDAMLRERR 239
                 58999****************99765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00043
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-T-HHHHHHHHHHHHHHHHH CS
     DUF3232  76 lahnslisslkiinrllvkeeveelseagledRieiaefakellseiye 124
                   h+ + + ++++++ll+ ++ ++l + +  + ++ia+  ++ + e+y+
  CTQ29976.1 278 QLHQGIDRATRLVDQLLTLSRLDSLAQLDDVQQVAIADLLQSAVMEMYH 326
                 468888899******************99999****************7 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00035       1.1       6      98 ..     353     447 ..     349     449 .] 0.72

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00035
  HATPase_c_5   6 lcvilgnlLdNAieacskieeekrfIrltvrekk...ksliisieNsyegekkklesskskkeehGiGlksireivkkykgnls.ieaedglFtlsv 98 
                  l++++ nlLdNA+  + + +  +  I+l++re     +   is +   +  ++ ++   ++    G+Gl+ +r+i++ ++ +++  +a dg F++ v
   CTQ29976.1 353 LSLLVRNLLDNAVRYSPRGS--QVDITLNAREFRvrdNGPGISPQALSRIGERFYRPPGQEAPGSGLGLSIVRRIASLHGMQVDfANARDGGFEARV 447
                  67788999999999888877..6778887775443114455555555555556666667888999***********999999995567788888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3683.14
//
Query:       CTQ29977.1  [L=193]
Description: modulator of drug activity, similar to electron transfer flavoprotein-NAD/FAD/quinone oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-36  126.5   0.6    1.8e-36  125.7   0.6    1.3  1  Flavodoxin_2  Flavodoxin-like fold
  ------ inclusion threshold ------
      0.045   13.5   0.1       0.46   10.2   0.1    2.1  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7   0.6   2.1e-40   1.8e-36       2     198 .]       3     188 ..       2     191 .. 0.84

  Alignments for each domain:
  == domain 1  score: 125.7 bits;  conditional E-value: 2.1e-40
                   EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTT...TEEEEEEHHCCT-----CCCCHCCHHHHTTCHHHHHHHHHHHHCSSEEEEEEE-BTTB--HH CS
  Flavodoxin_2   2 kiLiinahprpeksfssalaqafvealekagp...hevtvrdLyadflpvlttrdlaaklayeekpadveseqiekllaadaivlqfPlwwfgvPai 95 
                   +iLiin+  +++ +++++l+++++e +e+  +   h     d+                  +e  ++dv++e  +++l+ad++++q+P ww+g P+ 
    CTQ29977.1   3 NILIINGAKKFA-HSNGQLNDTLTEVAESYLRdagH-----DVKSV--------------RAES-EYDVKEEV-QNFLWADVVIWQMPGWWMGAPWT 77 
                   8**********6.888*************9975333.....44442..............1112.3*******.*********************** PP

                   HHHHHHHHS-TTTSC.E.......ETTCS.SCCCCTTTTSEEEEEEEESS-GGGSSTTSS..S-S-HHHHHHHHHHHHHHTT-EEEEEEEEESCTCC CS
  Flavodoxin_2  96 lKgwiDrvltagfaf.y.......teegg.egrgggLkgkkalvivttGgpeesyqergl..egaamdellpplrgilgfiGikdvepvlvegvaga 181
                   +K+++D v+t g+   y       +++++ +g+gg+ +gkk+++++t+++p e+++++ +  +g ++d ++ p++++ +f+G+++++++++++v ++
    CTQ29977.1  78 VKKYMDDVFTEGHGSlYasdgrtrSDASKkYGSGGLVQGKKYMLSLTWNAPMEAFTDKDQffHGVGVDGVYLPFHKANQFLGMEALPTFIANDVIKM 174
                   *************7777789999955566587777777******************99999999*****************************6433 PP

                   CHHHHHHHHHHHHHHHH CS
  Flavodoxin_2 182 edeealaealerleell 198
                       ++++++++++++l
    CTQ29977.1 175 P---DVPRYIAEYRKHL 188
                   3...3666666666654 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   5.1e-05      0.46      58      98 ..      45      85 ..       2     116 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 5.1e-05
                GGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCH CS
     FMN_red 58 qtsddvaellekiaaadaliivtPeYngsysgllKnalDrl 98
                +   dv+e ++   +ad++i+  P ++ +++   K  +D +
  CTQ29977.1 45 ESEYDVKEEVQNFLWADVVIWQMPGWWMGAPWTVKKYMDDV 85
                34567888899999*****************9999999966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1396.69
//
Query:       CTQ29978.1  [L=104]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-26   90.3   0.4    7.3e-26   90.1   0.4    1.1  1  ABM       Antibiotic biosynthesis monooxygenase
  ------ inclusion threshold ------
      0.053   13.9   0.1      0.059   13.7   0.1    1.2  1  DUF4188   Domain of unknown function (DUF4188)


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.4   8.1e-30   7.3e-26       1      78 []       1      87 [.       1      87 [. 0.95

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 8.1e-30
                CEEEEEEEEESTTGH..HHHHHHHHHHHHHHHHTSTTEEEEEEE.........EEETSTTEEEEEEEESSHHHHHHHHTSHHHHHHHHH CS
         ABM  1 mviviaeirvkpgqa..eafldafaeavesllaeepGclgyell.........rstedpdevvvieeWeseaaleahlksphfkaahea 78
                m++viaeir++pgq+  +a+ld+fa++++++l +e Gc+gy++l         + t++pd++v++e+Wes a+leahl++ph+ka++ea
  CTQ29978.1  1 MLTVIAEIRTRPGQHhrQAVLDQFAKIIPTVL-QEAGCHGYAPLvdhaagvsfQ-TTAPDSIVMVEQWESVAHLEAHLQTPHMKAWSEA 87
                99***************************995.***********8888777766.*******************************985 PP

>> DUF4188  Domain of unknown function (DUF4188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   6.6e-06     0.059      49      82 ..      52      88 ..       4      99 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.6e-06
     DUF4188 49 g....srevllvqYwrdvesLeafak.seeHreawrkfn 82
                +    ++++++v  w++v +Lea  + + +H++aw++  
  CTQ29978.1 52 FqttaPDSIVMVEQWESVAHLEA--HlQTPHMKAWSEAV 88
                14455899**************6..55889*****9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 794.67
//
Query:       CTQ29979.1  [L=631]
Description: topoisomerase IV subunit B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-40  135.9   0.0    2.2e-39  134.7   0.0    1.6  1  DNA_gyraseB    DNA gyrase B
    4.2e-24   84.5   1.0    9.3e-24   83.4   1.0    1.6  1  DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
    7.1e-17   61.9   0.1    1.3e-16   61.1   0.1    1.4  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    3.7e-11   43.2   0.0    6.9e-11   42.3   0.0    1.5  1  Toprim         Toprim domain
    0.00094   19.0   0.0      0.002   18.0   0.0    1.5  1  HATPase_c_3    Histidine kinase-, DNA gyrase B-, and HSP90-li
  ------ inclusion threshold ------
      0.017   15.4   0.0      0.032   14.5   0.0    1.4  1  TOPRIM_C       C-terminal associated domain of TOPRIM


Domain annotation for each model (and alignments):
>> DNA_gyraseB  DNA gyrase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.7   0.0   7.2e-43   2.2e-39       1     170 [.     219     385 ..     219     388 .. 0.91

  Alignments for each domain:
  == domain 1  score: 134.7 bits;  conditional E-value: 7.2e-43
  DNA_gyraseB   1 Glkdfveelnkdkkelike..vlsvegekaveevievevalqwtssyse.nilsFvNniatpeGGtHvdgfksaltktlneyakkkkllkkkeekisg 95 
                  Gl+d+++e +++   l ++  v  ++ge+       v++al w  +  e  ++s+vN i+t +GGtHv+g++++l+ +++e+++ +++l++++ k+s 
   CTQ29979.1 219 GLNDYLSEAVNGLPLLPEKpfVGAFSGET-----EAVDWALLWLPEGGElLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGV-KLSA 310
                  88999999999955555553344444444.....57********999998******************************************9.**** PP

  DNA_gyraseB  96 ediregltavvsvkipepqFeGQTKekLgnsevksivekvvseeleafleenkeeakkilekaveaakareaark 170
                  edi +++ +v+svk+++pqF GQTKe+L++++ +++v+ vv+++++ +l++n ++a+ ++e a+++a++r++a k
   CTQ29979.1 311 EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFSLWLNQNVQAAELLAEMAISSAQRRLRAAK 385
                  **********************************************************************98876 PP

>> DNA_gyraseB_C  DNA gyrase B subunit, carboxyl terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   1.0   3.1e-27   9.3e-24       2      63 .]     557     621 ..     556     621 .. 0.94

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 3.1e-27
  DNA_gyraseB_C   2 kkveiqRfKGLGEmnpeqLweTTmdpetRrLlqvtieda..eeadelfstLmGkk.vepRrefie 63 
                    +k ++qRfKGLGEmnp qL+eTT+dp+tRrL+q+ i+d+  +++++++++L++kk  e+Rr++++
     CTQ29979.1 557 GKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLVISDEdeQQTTAIMDMLLAKKrSEDRRNWLQ 621
                    689*********************************8854599************9*******97 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.1   4.3e-20   1.3e-16       2     110 ..      29     172 ..      28     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 4.3e-20
                 HHHHHHHHHHHHHHHHHHH..HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT..............GTCSTTCHHCSTCHTSTSSSHHHHHHHHH CS
   HATPase_c   2 dekrLrqiisnlvdNavkf..atkageieveikaseddlvisveDnGiGipkedlk..............klfekfsqddstkrggggtGlGlsivkkl 84 
                 d +r  ++ ++++dN+v++  a++a+++ev ++    d +++v D+G+G+p+++++              + ++kfs+ ++++ +gg +G+G s+v++l
  CTQ29979.1  29 DTTRPNHLGQEVIDNSVDEalAGHAKRVEVILH--A-DQSLEVIDDGRGMPVDIHPeegvpavelilcrlHAGGKFSN-KNYQFSGGLHGVGISVVNAL 123
                 778999999**********65558888899999..5.99*****************************555555****.******************** PP

                 HHHTTTEEEE.......................EEETTTEEEEEEEEES CS
   HATPase_c  85 velmgGeiwv.......................esepgrGttftftlpl 110
                 +++++ ++++                         + + Gt+++f++++
  CTQ29979.1 124 SKRVEVNVRRdgqvysiafengekvedlhvtgtCGKRNTGTSVHFWPDE 172
                 **87776666777777777766655544444432222559999999886 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   2.3e-14   6.9e-11       1     100 [.     414     522 ..     414     525 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.3 bits;  conditional E-value: 2.3e-14
                 EEEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHS.TTEEEEE..ECTTTHHHHHH....HHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHT.... CS
      Toprim   1 elvivEgpsdaktiakalgsgfqavtaslGhildlet.efkpvye..eiedkkkvlka....lkelakradeiilatDpDreGeaiawellevlk.... 88 
                 el++vEg+s+ +++++a+++++qa+++++G+il+  + + ++v+   e++d+  ++++     + + +r+ +i ++ D+D +G +ia++l  ++     
  CTQ29979.1 414 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEvSSDEVLAsqEVHDISVAIGIdpdsDDLSQLRYGKICILADADSDGLHIATLLCALFVrhfr 512
                 69********************************999644444447799999999999999544455**********************9955544444 PP

                 HHHTTTEEEEEE CS
      Toprim  89 ellenkigrvef 100
                  l+++  g+v++
  CTQ29979.1 513 TLVKE--GHVYV 522
                 55555..66665 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   6.6e-07     0.002       9      47 ..      39      77 ..      37     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 6.6e-07
  HATPase_c_3  9 elvdNsld....AdaenvkievnknrgktgeivieDdGkGmse 47
                 e++dNs+d    ++a++v++ ++ ++    ++ + DdG Gm+ 
   CTQ29979.1 39 EVIDNSVDealaGHAKRVEVILHADQ----SLEVIDDGRGMPV 77
                 89*****9999889999*******85....9**********74 PP

>> TOPRIM_C  C-terminal associated domain of TOPRIM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.1e-05     0.032      36      96 ..     558     622 ..     536     630 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-05
    TOPRIM_C  36 kwkikYYkGLgtstskeakeyfsn.ldkhlkefkleeeedk...eaielaFskkkaderkewlkk 96 
                 k +++ +kGLg ++  + +e   +  +++l+++ +++e+++   + +++   kk++++r++wl++
  CTQ29979.1 558 KPNVQRFKGLGEMNPMQLRETTLDpNTRRLVQLVISDEDEQqttAIMDMLLAKKRSEDRRNWLQE 622
                 5567889*******999998765514566677777766555455789****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 4714.37
//
Query:       CTQ29980.1  [L=191]
Description: putative esterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-70  234.5   0.0    9.3e-70  234.4   0.0    1.0  1  UPF0227        Uncharacterised protein family (UPF0227)
    0.00048   20.8   0.7      0.019   15.6   0.1    2.1  2  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.034   13.4   0.0       0.12   11.6   0.0    1.9  2  Hydrolase_4    Serine aminopeptidase, S33
       0.18   10.9   0.0       0.29   10.2   0.0    1.2  1  DUF2048        Abhydrolase domain containing 18


Domain annotation for each model (and alignments):
>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.4   0.0   2.1e-73   9.3e-70       2     186 ..       4     188 ..       3     189 .. 0.99

  Alignments for each domain:
  == domain 1  score: 234.4 bits;  conditional E-value: 2.1e-73
     UPF0227   2 llYlHGFdSSPlshkaqllsqfiaedvlaielsvlklkedpqqalkeleklvaelgddnillvGssLGGyyatrlgerfglrqvllnPalkplenlagk 100
                 llYlHGF+SSP+s+ka  l+ ++a++ ++i+++v++l+ +p+++++ le++v e+g + +++vGssLGGyyat+l+++f+l +v++nPa++p+e l+++
  CTQ29980.1   4 LLYLHGFNSSPRSAKATALKTWLAQHYPEITMVVPELPPYPAETAELLESIVLEHGGEPLGVVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLNNF 102
                 89************************************************************************************************* PP

     UPF0227 101 lgeeavqstqetyvleeyhiielkalelsrlkrperilvllskqDevldyrravaefraaaeiveddgdHafkdvsehlqqiiafl 186
                 lg++++++t+++yvle++hi++lk+++++ l++p+ +++l++++Devldyr+av ++++++++ve++g+Haf ++ +h+ qii+fl
  CTQ29980.1 103 LGHNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLLWLLQQTGDEVLDYRQAVHYYASCRQTVEEGGNHAFVGFDDHFTQIIEFL 188
                 ************************************************************************************97 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.3e-06     0.019      45     115 ..      43     109 ..       4     124 .. 0.65
   2 ?    4.1   0.1     0.014        63     167     218 ..     134     185 ..     113     187 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.3e-06
                    --HHHCHHHHHHHCCTT....TTSEEEEEETCHHHHHHHHHHCC.....EEEEES-..----TTTS----TTHHHH CS
  Abhydrolase_6  45 ldledladlaalldelaa..gggpvvlvGHSlGGalalaaapla...lvvgvlldppptalpagllaaalelllal 115
                    +  e     a+ll++++   gg p  +vG SlGG++a+    l     + +v+++p   + p+ ll+ +l + + +
     CTQ29980.1  43 YPAET----AELLESIVLehGGEPLGVVGSSLGGYYATW---LSqcfMLPAVVVNP--AVRPFELLNNFLGHNENP 109
                    33333....4444444445458888**********9999...66444555599999..666666666666666554 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.014
                    TT-TTGCEEE.CTT-CHHHHCHHCCCH.STTEEETCE...SSS.-HHHHSH.HHHH CS
  Abhydrolase_6 167 adlpvpllvl.ggeDplvprllerlla.qagarlpvvlpgaGH.lphleep.deva 218
                    ++   ++ +l  ++D+++   ++++ +  a++r  +v +g+ H ++ +++  ++++
     CTQ29980.1 134 EAPDLLW-LLqQTGDEVLD--YRQAVHyYASCRQ-TVEEGGNHaFVGFDDHfTQII 185
                    3333333.33359999999..9999999899999.99******9444445557665 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.7e-05      0.12      52      93 ..      37      78 ..      28     105 .. 0.79
   2 ?   -1.5   0.0      0.28   1.2e+03     194     219 ..     139     164 ..     125     169 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.7e-05
  Hydrolase_4 52 vpsfddyvdDlaafvekvkeehpelplfllGhSmGGlially 93
                 vp++  y +  a+++e ++ eh+++pl ++G S+GG+ a+ +
   CTQ29980.1 37 VPELPPYPAETAELLESIVLEHGGEPLGVVGSSLGGYYATWL 78
                 55556666778899***********************98754 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.28
  Hydrolase_4 194 llllhGeaDkvvdpeasrelyerlgs 219
                  l+ll+ + D+v d++++ ++y+++++
   CTQ29980.1 139 LWLLQQTGDEVLDYRQAVHYYASCRQ 164
                  78899999999999999888887765 PP

>> DUF2048  Abhydrolase domain containing 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   6.4e-05      0.29     161     204 ..      45      89 ..      37      95 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.4e-05
     DUF2048 161 lEslvllhwlere.GyGplgltGlSmGGhmaslaasnwpkplvlv 204
                 +E+++ll+ +  e G  plg+ G S+GG +a+  +  +  p+v+v
  CTQ29980.1  45 AETAELLESIVLEhGGEPLGVVGSSLGGYYATWLSQCFMLPAVVV 89 
                 78999998877664877**************98777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       344  (0.0191868); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1538.43
//
Query:       CTQ29981.1  [L=275]
Description: cyclic 3',5'-adenosine monophosphate phosphodiesterase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-18   68.4   0.4    1.5e-18   68.1   0.4    1.1  1  Metallophos    Calcineurin-like phosphoesterase
    3.6e-08   33.8   0.1    6.5e-08   32.9   0.1    1.4  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.4   1.7e-22   1.5e-18       2     203 ..      16     206 ..      15     207 .. 0.78

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 1.7e-22
                  EEEEEESBTB.......TTCCTHHHHHHHHHHHHHHH.TTESEEEEESTSSSSS...HHHHHHHHHHHHHHHHTSEEEEEC-TTSCHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHl.......algggqlddllkllddllre.ekpdlvllaGDlvdrg...dlekellellaalvkypipvylllGNHegfeeellnkygyl 88 
                  ril+i+D+Hl        lg   +d+++++l+ ++++   +dl++ +GDl ++     +++ ++e +a + +   p+++l+GNH+ f+  + +  ++ 
   CTQ29981.1  16 RILQITDTHLfaekhetLLGINTWDSYQAVLSAIHASqRPCDLIVATGDLAQDHssaAYQH-FAEGIASFAA---PCVWLPGNHD-FQPAMYSTLQEA 108
                  8****************888899999999999995551456**********9998866666.8888899999...**********.888666666666 PP

                  HHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCCHHHHHH.HHHHTTCSEEEEEESSESSCSSSCSCCHHHHH CS
  Metallophos  89 gifsepwrsdaevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepgdewlkd.lekrekadwvivlgHsplyrgsgylfgdeale 185
                  gi ++     ++  ++l l s      +v+ +++g                  e ++ + ewl++ l +  ++ ++++l+H+pl+  ++ + ++++l+
   CTQ29981.1 109 GISPAKRVFLGDRWQILLLDS------QVFGVPHG------------------ELSDFQLEWLEHkLAEAPERYTLLLLHHHPLP-AGCSWLDQHSLR 181
                  666555555555666666666......56666666..................33344499****888899999999999*****.888888888888 PP

                  .......HHHHHTTESEEEEESSSS CS
  Metallophos 186 .......dllkkygvdlvisGHtHv 203
                          l   ++v++ ++GH+H+
   CTQ29981.1 182 nagaldsALSAWPRVKHLLCGHIHQ 206
                  77777765555577**********7 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   7.2e-12   6.5e-08       2     130 ..      16     207 ..      15     228 .. 0.67

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 7.2e-12
  Metallophos_2   2 klaiiSDlH...............snldaleavlealkevgvdaiihaGDl.eeeepevleellela.....pvlaVrGNnD.............. 62 
                    +++ i+D+H               ++++a+  +++a ++  +d+i+ +GDl ++ +  + + + e       p +  +GN+D              
     CTQ29981.1  16 RILQITDTHlfaekhetllgintwDSYQAVLSAIHASQRP-CDLIVATGDLaQDHSSAAYQHFAEGIasfaaPCVWLPGNHDfqpamystlqeagi 110
                    6889*****9999999999997777777777777776665.7********9533333344444443366679**********76555555554444 PP

  Metallophos_2  63 ...eevveedvlreaaelgtdl..............................peeaelel....agekvlliHgdpl............gvkdala 109
                       +                ++                               e++   l    ++ ++ll+H++pl            + + al+
     CTQ29981.1 111 spaK----------------RVflgdrwqillldsqvfgvphgelsdfqlewLEHK---LaeapERYTLLLLHHHPLpagcswldqhslRNAGALD 187
                    4440................444555555555555555655554333332222333...244355666*******99******9988765555666 PP

  Metallophos_2 110 ellkeaeegsdvvvcGHtHvp 130
                    ++l++ + +++ ++cGH+H++
     CTQ29981.1 188 SALSA-WPRVKHLLCGHIHQE 207
                    66666.99999********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2074.07
//
Query:       CTQ29982.1  [L=140]
Description: putative dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-41  141.0   0.4    1.8e-41  140.8   0.4    1.1  1  DUF1249   Protein of unknown function (DUF1249)
  ------ inclusion threshold ------
       0.14   11.9   0.0       0.19   11.4   0.0    1.2  1  LuxS      S-Ribosylhomocysteinase (LuxS)


Domain annotation for each model (and alignments):
>> DUF1249  Protein of unknown function (DUF1249)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.8   0.4     2e-45   1.8e-41       1     115 [.      21     134 ..      21     135 .. 0.98

  Alignments for each domain:
  == domain 1  score: 140.8 bits;  conditional E-value: 2e-45
     DUF1249   1 rLlrLlpelealeeerefsveqlldlslevlesarYTttveleqeseelellkkpkltvRlYhDArmaEvlsaqqhrrlkarydypnkkmhqldeKlql 99 
                 +L+rLlp  +a++e+ +++v++ ++++l+++es+rYTt+v +eq+  +++  + p++tvRlYhDA +aEv+s+qq+ r+karydypnkk+hq+deK+q+
  CTQ29982.1  21 QLRRLLPRTDAAGEKVSYQVGS-AQYRLTIVESTRYTTLVAIEQTLPAVSYWSLPSMTVRLYHDAMVAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQI 118
                 599*****************99.**************************************************************************** PP

     DUF1249 100 NrFLaeWLefclkqgh 115
                 N+FLa+WL++cl++g 
  CTQ29982.1 119 NQFLADWLRYCLAHGA 134
                 **************96 PP

>> LuxS  S-Ribosylhomocysteinase (LuxS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.1e-05      0.19      22      64 ..      86     128 ..      68     137 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.1e-05
                 EEEETTSEEEEEEEEE-S-TTTB---HHHHHHHHHHHHHHHHH CS
        LuxS  22 kdkvekgdvittfDlRlkkPneevletaalHtlEHllAtflRn 64 
                 + +v + ++i  f  R   Pn+++ + ++ H +  +lA++lR 
  CTQ29982.1  86 VAEVCSSQQIFRFKARYDYPNKKLHQRDEKHQINQFLADWLRY 128
                 456678899********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1019.32
//
Query:       CTQ29983.1  [L=210]
Description: ADP-ribose pyrophosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-12   47.1   0.6    3.1e-12   46.7   0.6    1.2  1  NUDIX      NUDIX domain
  ------ inclusion threshold ------
      0.035   14.7   0.1          2    9.1   0.1    2.3  2  DUF3892    Protein of unknown function (DUF3892)
      0.056   13.8   1.0       0.76   10.1   0.1    2.4  2  HTH_Tnp_1  Transposase


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.6   5.1e-16   3.1e-12       5     116 ..      59     179 ..      55     197 .. 0.65

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 5.1e-16
                 EEEEEEEETTSE.EEEEEES....SSSTTT..E..ESSEEECBTTSHHHHHHHHHHHHHHSEEE.EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEC CS
       NUDIX   5 avgvvllnekge.vLlvrrs....kkpfpg..W..elPgGkvepgEtpeeAArREleEEtGlea.ellellgrlhylapydgpygdeheilyvfleeve 93 
                 a+ ++ +++ +  v+lv++       ++++  W  e+++G++e+gEt+e+ ArRE+ EE+Gle+ ++  +l+   yla++ g      e l ++++ev+
  CTQ29983.1  59 AAVLLPFDPVRDeVVLVEQIriaaY-DTSEspWllEMVAGMIEAGETVEDVARREALEEAGLEVgRTKPILS---YLASPGGT----SERLSILVGEVD 149
                 4444466666445*****9988853.4444589777**************************8866666666...55555444....444555554444 PP

                 SGCSST.....STTTEEEEEEEEHHHH..H CS
       NUDIX  94 gelepn.....denevsevrwvpleel..l 116
                    + +     +ene   v  v+ e++  +
  CTQ29983.1 150 ASTAKGihglaEENEDIRVHVVSREQAyqW 179
                 444444444557777666668888887441 PP

>> DUF3892  Protein of unknown function (DUF3892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.022   1.3e+02      15      56 ..      79     127 ..      74     137 .. 0.77
   2 ?    9.1   0.1   0.00033         2      22      46 ..     162     189 ..     147     196 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.022
     DUF3892  15 rItevkgsntlstgekyskeeaislikngkk............agVevvrskdG 56 
                 rI++++     ++ + +  e +  +i+ g++            ag ev r+k  
  CTQ29983.1  79 RIAAYD-----TSESPWLLEMVAGMIEAGETvedvarrealeeAGLEVGRTKPI 127
                 677777.....4446999*************88888888888877888777755 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00033
     DUF3892  22 sntlstgekyskeeaislikngkk...a 46 
                 +n +   +++s+e+a++++++gk+   a
  CTQ29983.1 162 ENEDIRVHVVSREQAYQWVEEGKIdnaA 189
                 555556689**************95543 PP

>> HTH_Tnp_1  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00013      0.76      14      38 ..      93     117 ..      91     123 .. 0.88
   2 ?    1.9   0.1     0.046   2.8e+02      31      47 ..     167     183 ..     163     207 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00013
   HTH_Tnp_1  14 riVreslepgksvsevArrhgvspn 38 
                 ++V+   e+g +v +vArr  + ++
  CTQ29983.1  93 EMVAGMIEAGETVEDVARREALEEA 117
                 79999**************988776 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.046
   HTH_Tnp_1  31 rrhgvspnqLykWrrqy 47 
                 r h vs++q y+W+ + 
  CTQ29983.1 167 RVHVVSREQAYQWVEEG 183
                 67889********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1638.00
//
Query:       CTQ29984.1  [L=490]
Description: transport channel [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-59  199.6  39.7    1.9e-32  112.6  16.0    2.1  2  OEP           Outer membrane efflux protein
  ------ inclusion threshold ------
        0.6    9.9   5.1       0.21   11.4   0.4    2.4  2  DisA-linker   DisA bacterial checkpoint controller linker reg
        2.7    8.1  14.3        4.1    7.5   0.2    4.1  4  DUF148        Domain of unknown function DUF148
        6.8    6.8   8.4        4.7    7.3   0.3    2.8  2  MnmE_helical  MnmE helical domain


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2  15.7   3.7e-30   1.7e-26       1     188 []      25     209 ..      25     209 .. 0.98
   2 !  112.6  16.0   4.2e-36   1.9e-32       2     188 .]     232     426 ..     231     426 .. 0.95

  Alignments for each domain:
  == domain 1  score: 93.2 bits;  conditional E-value: 3.7e-30
         OEP   1 ldellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaql 99 
                 l +++++a   npdl+++ a+ +aa + +++a++  lP+l+l++ y y+++  +++g ++++++   +l+l+q lfd  +  +++  ++    ++  ++
  CTQ29984.1  25 LLQVYQQARISNPDLRKSAADRDAAFEKINEARSPLLPQLGLGADYTYNNGYRDSNGINSNVTS--GSLQLTQVLFD-MSKWRALTLQEKTAGIQDVTY 120
                 568999*********************************************************8..***********.999999999999********* PP

         OEP 100 eqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                 +  +q+l+l++a+ay+++l+a  +l   e++ ++  ++l+++ +r+++Gl+ ++dv++a+++++ ++a++++a+++l +a  +L++ +g
  CTQ29984.1 121 QTDQQTLILNTATAYFKVLAAIDTLSYTEAQKQAIYRQLDQTTQRFNVGLVAITDVQNARSQYDAVLANEVTARNDLDNAVEELRQVTG 209
                 **************************************************************************************998 PP

  == domain 2  score: 112.6 bits;  conditional E-value: 4.2e-36
         OEP   2 dellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgtt.........svgltlsqplfdggkrrarvkaakaq 91 
                 + ll+ a ++n++l++a+++ + a++++++a+   lPtlsls+s g ++ +++g+  +++++++         ++gl++s+pl++gg+  ++vk+a+++
  CTQ29984.1 232 NALLKEAENRNLSLLQARLNQDLAREQIRQAQDGHLPTLSLSASSGISNTSYSGSK-THNNPQQyqdndagqnQIGLNFSLPLYQGGAVTSQVKQAQYN 329
                 67999***************************************999777776655.455555559********************************* PP

         OEP  92 leaaeaqleqarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                    a +qle a +++ + v+++++++ ++  ++ ++++a+ +a++ l+++ea y +G+ +++dvl+a   l++a+++l +a++++ +++++++ +lg
  CTQ29984.1 330 FVGASEQLESAHRSVVQTVRSSFNNVNASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQQLSNARYNYLINELNIKSALG 426
                 *********************************************************************************************9997 PP

>> DisA-linker  DisA bacterial checkpoint controller linker region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.5      0.19   8.5e+02      15      58 ..     129     171 ..     115     180 .. 0.74
   2 ?   11.4   0.4   4.7e-05      0.21       8      65 ..     352     409 ..     345     439 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.19
                  HHHHHHHHHHHHHHHHHHHHHHHTT-EBHHHHHHHHHHHHHHHH CS
  DisA-linker  15 lqTLekYrsvldevlsnLsalEfedlVtlsdVaeviqrlemvlr 58 
                  l+T   Y +vl  ++++Ls  E ++++  ++  ++ qr+ + l 
   CTQ29984.1 129 LNTATAYFKVLA-AIDTLSYTEAQKQAIYRQLDQTTQRFNVGLV 171
                  667777777775.6889999999999999999999998876555 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4.7e-05
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EBHHHHHHHHHHHHHHHHHHHHHHH CS
  DisA-linker   8 lakanqalqTLekYrsvldevlsnLsalEfedlVtlsdVaeviqrlemvlrikeeiek 65 
                  ++ +n  +++++ Y++ + ++ s+L+a+E    V  +++++v+  +  + + k+++++
   CTQ29984.1 352 FNNVNASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQQLSN 409
                  577999*****************************************99999998875 PP

>> DUF148  Domain of unknown function DUF148
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2      0.39   1.8e+03      77      98 ..     105     126 ..      84     134 .. 0.74
   2 ?    1.3   1.9     0.078   3.5e+02      38      81 ..     121     164 ..      98     168 .. 0.75
   3 ?    5.6   0.2    0.0037        17      58      92 ..     172     206 ..     169     221 .. 0.90
   4 ?    7.5   0.2   0.00092       4.1      33     101 ..     319     390 ..     313     397 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.39
      DUF148  77 slTrkeqkeaieelkkqypkev 98 
                  lT +e+++ i+ ++ q ++++
  CTQ29984.1 105 ALTLQEKTAGIQDVTYQTDQQT 126
                 5788888888888888877774 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.078
      DUF148  38 kefeakvkaqkeevkknvtavisnLssvqekleaIldnkslTrk 81 
                 ++ ++++  +++ +  +v a+i +Ls  +++ +aI+   ++T +
  CTQ29984.1 121 QTDQQTLILNTATAYFKVLAAIDTLSYTEAQKQAIYRQLDQTTQ 164
                 44555555566666667888999999999999999999999876 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0037
      DUF148  58 visnLssvqekleaIldnkslTrkeqkeaieelkk 92 
                 +i   +++ ++++a+l+n+   r++  +a+eel++
  CTQ29984.1 172 AITDVQNARSQYDAVLANEVTARNDLDNAVEELRQ 206
                 6888999**************************98 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.00092
      DUF148  33 vtdeykefeakvkaqkeevkknvtavisnLs....svqekleaIldnkslTrkeqkeaieelkkqypkevstl 101
                 vt+++k+ + +   + e+++ ++ +v+++      +v++++++I +  ++ +   ++ +++++  y++ ++t+
  CTQ29984.1 319 VTSQVKQAQYNFVGASEQLESAHRSVVQTVRssfnNVNASISSINAY-KQAVVSAQSSLDAMEAGYSVGTRTI 390
                 55666666666555555555555555554443333999999999854.4555666666777766666666666 PP

>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.3    0.0011       4.7     153     195 ..     171     214 ..      71     216 .. 0.70
   2 ?    1.9   2.6     0.049   2.2e+02     112     186 ..     356     429 ..     224     431 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0011
                   xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical 153 kalealeeakealeaglpldlv.aedLrealeaLgeItGevvte 195
                    a++ +++a+++ +a l+ ++    dL +a+e+L ++tG+ + e
    CTQ29984.1 171 VAITDVQNARSQYDAVLANEVTaRNDLDNAVEELRQVTGNYYPE 214
                   3556668888888888888888799**************98765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.049
                   xxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  MnmE_helical 112 kiSaktgegieeLeeaikele.l.eeieeeplltnaRhkealekalealeeakealeaglpldlv.aedLrealeaLg 186
                   + S+ +   i++ ++a+ +++ + ++  e  + + +R +  + +a + l +ak++l+++    l+ + ++++al  L+
    CTQ29984.1 356 NASISS---INAYKQAVVSAQsSlDA-MEAGYSVGTRTIVDVLDATTTLYNAKQQLSNARYNYLInELNIKSALGTLN 429
                   222222...66666666554422222.346899999999999999999999999999986455556888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1105  (0.061632); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3634.39
//
Query:       CTQ29985.1  [L=223]
Description: conserved hypothetical protein; putative outer membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-57  192.0  13.8    1.1e-56  191.7  13.8    1.1  1  DUF1190   Protein of unknown function (DUF1190)
     0.0001   22.1   5.2    0.00012   21.8   5.2    1.1  1  SARAF     SOCE-associated regulatory factor of calcium homoeo


Domain annotation for each model (and alignments):
>> DUF1190  Protein of unknown function (DUF1190)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.7  13.8   1.2e-60   1.1e-56       1     161 []      41     208 ..      41     208 .. 0.97

  Alignments for each domain:
  == domain 1  score: 191.7 bits;  conditional E-value: 1.2e-60
     DUF1190   1 eeeakvyssvdeCvaanevsaeqCqaayaeAqkeaektaPrYasredCeaefgagqCtq...........aqqssgggsffmPlmaGfmlgrllsgggg 88 
                 +e++++y+++d+C+aan+ +a++C++ay++A keae+taP+Ya+redC aefg+gqC+q           ++q++++gsf+mPlmaG+m+grl+ ggg 
  CTQ29985.1  41 DETVSLYQNADDCSAANPGKAAECTTAYTNAVKEAERTAPKYATREDCVAEFGEGQCQQtpaqagvapenQAQAQSSGSFWMPLMAGYMMGRLM-GGGM 138
                 5899*****************************************************************977888889****************.8999 PP

     DUF1190  89 yrsqPlyrsrsrestlsgkeafvsasgknygaassekrtvnvaktalkpkptvtstvsrgGFGssssarsslg 161
                 +++qPl++s++++s+++g+  +++asgk+ygaa++ +rt+nv+kta++pkp++t+tv+rgGFG+s++++s+++
  CTQ29985.1 139 AQQQPLFSSKNPASPAYGQ--YTDASGKSYGAAQP-GRTMNVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQ 208
                 9******************..**********8887.99*******************************9985 PP

>> SARAF  SOCE-associated regulatory factor of calcium homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   5.2   1.4e-08   0.00012     159     328 ..      16     200 ..       1     203 [. 0.64

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.4e-08
       SARAF 159 sasllfvvlvllviayivykaflaaeee...reaeaeggrrgegggggggggg...pgseeeqddpPppy...........sltksqkpssssessqqg 240
                 +++  ++ + l+v a+ + + + +++e+       ++    +  ++g+ ++ +   ++  +e +   p y           + +++q+ +++   + ++
  CTQ29985.1  16 WSARHLTPVALAVTAVFMLAGCEKSDETvslY---QNADDCSAANPGKAAECTtayTNAVKEAERTAPKYatredcvaefgE-GQCQQTPAQAGVAPEN 110
                 33444566677888888888888888885332...333333333333333333233333333366666667******96642.3344444443445555 PP

       SARAF 241 eqeeswrpGFWtGlatGaaaGYlagrrraqneeteeeekeksssWgsss..egsssssssssssssassssssssssssstrestGFGgT 328
                 +++++  + FW  l++G + G l+g   aq++   ++++  s  +g+ +  +g+s  ++++  + +  +++ ++++++++t ++ GFG++
  CTQ29985.1 111 QAQAQSSGSFWMPLMAGYMMGRLMGGGMAQQQPLFSSKNPASPAYGQYTdaSGKSYGAAQPGRTMNVPKTAMAPKPATTTTVTRGGFGES 200
                 56666669****************99999766665555555555554444488888888888888888999999999999********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1687.47
//
Query:       CTQ29986.1  [L=386]
Description: putative enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.6e-160  532.6   0.1   6.3e-160  532.5   0.1    1.0  1  GSP_synth  Glutathionylspermidine synthase preATP-grasp
  ------ inclusion threshold ------
       0.13   12.6   0.0       0.31   11.4   0.0    1.6  1  TRCF       TRCF domain


Domain annotation for each model (and alignments):
>> GSP_synth  Glutathionylspermidine synthase preATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  532.5   0.1  7.1e-164  6.3e-160       1     378 []      12     384 ..      12     384 .. 0.98

  Alignments for each domain:
  == domain 1  score: 532.5 bits;  conditional E-value: 7.1e-164
   GSP_synth   1 weekleeegftfhtedgepYwdesaayaftlaeveeleeateelhqmcleaaeevveeeellarlgipeellelireSwerrepsLygRfDlaydGkgp 99 
                 w+ek++e+gf+fht++gepYw+e+a+y++tla+ve+le++t+elhqmcl+++e+v++++el+++++ip++++ ++r+Sw++++psLy+R+Dla+dG g+
  CTQ29986.1  12 WREKATEYGFNFHTMYGEPYWSEEAYYKLTLAQVEKLEAVTAELHQMCLQVVEKVIASDELMTKFRIPKHTWGFVRQSWKTNQPSLYSRLDLAWDGVGE 110
                 99************************************************************************************************* PP

   GSP_synth 100 akllEyNaDTPTsLlEaavvqwlwledqreagelkeeadqfnslhealverfkeltleeekeklhfsavedseEDratvayLqdtakeagleteflpie 198
                 +kllE+NaDTPTsL+Eaa++qw wledq +ag+l++ +dqfnsl+e+l++rf el+ +   + lh+++++d+ EDr+tv+yLqd+a+eagl+tefl++e
  CTQ29986.1 111 PKLLENNADTPTSLYEAAFFQWIWLEDQLNAGKLPAGSDQFNSLQEKLIDRFGELREQFGFQLLHMACCRDTVEDRGTVQYLQDCAAEAGLATEFLYVE 209
                 ******************************************************75567889************************************* PP

   GSP_synth 199 digldeeegrfvdadgrkiellfkLyPwEwlvedefgeelaeallevrllePawklllsnKalLallWelypghpnLLpayfeedeeeekgkkyvkKpl 297
                 digl e +g+f+d+++++i +lfkLyPwE+++++ f+++l++a   vr+lePawk ++snKalL++lWe++p+hpnLL ayf+ed  + +++kyv Kp+
  CTQ29986.1 210 DIGLGE-KGQFTDLQDQVIGNLFKLYPWEFMLREMFSTKLEDAG--VRWLEPAWKSIISNKALLPMLWEMFPNHPNLLAAYFSEDT-HPEMEKYVIKPI 304
                 *****8.*************************************..************************************7776.669********* PP

   GSP_synth 298 fgREGanveiveegsevaeekegeygeekviyQeyaelpkfdgsypvlgswlvgdeaaGlgiRedrglitdnlsrFvPhli 378
                 f+REGanv+ive+g+ v++  eg+ygee+ i+Q++++lpkf++sy+++gswl++d++aG+giRedr+lit++lsrF+Ph++
  CTQ29986.1 305 FSREGANVSIVENGKVVEAV-EGPYGEEGTIVQAFYPLPKFGDSYTLIGSWLINDQPAGIGIREDRALITQDLSRFYPHIF 384
                 ***********999999877.**********************************************************96 PP

>> TRCF  TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.5e-05      0.31      32      52 ..     149     169 ..     146     191 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.5e-05
        TRCF  32 eeldeleeeLiDrFGklpeev 52 
                 ++++ l+e+LiDrFG+l e+ 
  CTQ29986.1 149 DQFNSLQEKLIDRFGELREQF 169
                 68899************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2942.08
//
Query:       CTQ29987.1  [L=263]
Description: putative dioxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-27   95.2   0.0      4e-27   95.0   0.0    1.1  1  LigB      Catalytic LigB subunit of aromatic ring-opening dio
  ------ inclusion threshold ------
       0.24   10.7   0.0       0.32   10.3   0.0    1.1  1  DltD      DltD protein


Domain annotation for each model (and alignments):
>> LigB  Catalytic LigB subunit of aromatic ring-opening dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0   4.4e-31     4e-27       2     265 ..       8     254 ..       7     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 4.4e-31
        LigB   2 alllsHvppilaavdgkeqealrekvikgyesireriaek..sPdtiivvsphhltdvnpvfvlgvaeefeaiddfg...kflprleyelkgnpeLaek 95 
                 al+l H++p+ + +d +            y+ + +++ e   +P++i+vvs+h+ t+   v   ++ e  ++i+dfg   ++l++  y+++g+p La++
  CTQ29987.1   8 ALFLGHGSPMNVLED-NR-----------YTRAWAQLGETlpRPKAIVVVSAHWFTRGTGV---TAMEAPKTIHDFGgfpQALYDTHYPAPGSPALAQR 91 
                 677888888877777.22...........33333445555569*************88855...4444457999999999******************* PP

        LigB  96 iaealkksgidlavesnsmklDHGtlvPLelmlpdeakvpvikvslntvaypllsferlykLGeAlrkaveeldknvlilgsGglsHqlegdeaakada 194
                 ++e+l    + l    +  + DHG +  L  m+p +a +p +++s+ +     + ++ + ++G+ l++++   d++++ ++sG++ H+l+  +  ++++
  CTQ29987.1  92 LVELLSPVPVTLD--TEAWGFDHGSWGVLIKMYP-QADIPMVQLSIDS----TKPPAWHLEMGRKLASLR---DEGIMLVASGNVVHNLRTARWHGENT 180
                 *****88777765..599****************.9************....7999**************...********************998888 PP

        LigB 195 qtlllneefdeelldllke...grveelckmskeelsaaaghe.eeelvplvvalGalsgd.kaelrkelvsyegl 265
                  + +++e f + +  +l+    ++   l ++ + e    + ++  e++ pl+  lG+ +g     ++ +++ +  l
  CTQ29987.1 181 -PYPWAESFNNYVKANLQWqglDEQHPLVNYLAHEGGSLS-NPtAEHFLPLLYVLGTWDGVeAMTIPVDGIEMGSL 254
                 .999*************98666444458888877777775.45599***********9996545555555555555 PP

>> DltD  DltD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   3.6e-05      0.32      72      99 ..      30      58 ..      26      92 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.6e-05
                TTSHHHHTT-EEEEE--GGG--TT.-S-H CS
        DltD 72 galadelknkkvvlilSpqWFtkk.Glds 99
                ++l++ l   k+++++S  WFt++ G++ 
  CTQ29987.1 30 AQLGETLPRPKAIVVVSAHWFTRGtGVTA 58
                577889999*************9889875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2003.02
//
Query:       CTQ29988.1  [L=256]
Description: zinc transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-30  105.0  23.0    7.1e-24   84.6   9.7    2.1  2  Zip       ZIP Zinc transporter


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   4.5     1e-10   1.8e-06      12     102 ..       5      91 ..       1     103 [. 0.72
   2 !   84.6   9.7     4e-28   7.1e-24     181     331 ..     103     245 ..      97     247 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1e-10
         Zip  12 lilsllgllgpllvpkiskl...lsklllslllafavGvllgtaflhLlPealealeesqleeehthplagllvllGflllllveklltmivek 102
                 lil+ll+++  ++      +   +s++ll + l fa+G++l  +++ +lP al+a + s        +l  +++++G+l ++ +++ll +++++
  CTQ29988.1   5 LILTLLAGSATFIGAIFGVIgqkPSNRLLGFSLGFAAGIMLLISLMEMLPAALAAEGMSP-------LLGYGMFVVGLLGYFGLDRLLPHAHPQ 91 
                 444444444444444333334448888888999999999999999999999988888887.......788888888888888888888887665 PP

  == domain 2  score: 84.6 bits;  conditional E-value: 4e-28
         Zip 181 slkvraiilllglilHsfidGLAlG..vssssstgislfiAvllHelpeelglgaiLlkaglsrkkavllnllfaltaplGiliGilvrsisessgaei 277
                 +l+  ai+l+lg++lH+f++G+A+   +s++ + g+ + +Av lH++pe+l++ ++++ a  sr+kavl++ l++++ +lG ++++l   i +s  + +
  CTQ29988.1 103 NLRRTAILLTLGISLHNFPEGIATYvtASNNLELGMGVALAVALHNIPEGLAVAGPVYAATGSRSKAVLWAGLSGMAEILGGVLAWL---ILGSLVSPL 198
                 455679******************99999**********************************************************...999****** PP

         Zip 278 vsgillalsaGtflYvalvellp..hEllnekgssslkqsllqllglllGfalmll 331
                 v g ++a  aG+++  ++ el+p  +E++ ++           ++g+l+G+ +m l
  CTQ29988.1 199 VMGAIMAAVAGIMVALSVDELMPlaKEIDPQS---------NPSYGVLCGMSVMGL 245
                 **********************9555555555.........8999*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1734.56
//
Query:       CTQ29989.1  [L=217]
Description: 3,4-dihydroxy-2-butanone-4-phosphate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-83  277.4   1.2    5.5e-83  277.2   1.2    1.0  1  DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase


Domain annotation for each model (and alignments):
>> DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.2   1.2   3.1e-87   5.5e-83       1     192 []      17     208 ..      17     208 .. 0.99

  Alignments for each domain:
  == domain 1  score: 277.2 bits;  conditional E-value: 3.1e-87
                    HHHHHHHHTT--EEEESSTTTT-BEEEEEEGGG--HHHHHHHHHHB-S--EEEEEHHHHHHTT--BSSSS-SSTT---BB--EEESST-SSS-SHH CS
  DHBP_synthase   1 eeaiealkaGkfvivvDdedrenegdLiiaAekvtpekvafmirhasGlicvalteeradeLeLplmveenedkhktaftvsvdaaegttTGIsaa 96 
                    e+a++al++G+ v+v+Ddedrenegd+i+aAe++t e++a++i+h+sG++c++lteer ++L+Lp+mve+n++ ++t ftv+++aaeg+tTG+saa
     CTQ29989.1  17 EHALNALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIHHGSGIVCLCLTEERRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAA 112
                    5799******************************************************************************************** PP

                    HHHHHHHHHH-TT--GGGEEEEEEEEEEEE-TTGGGTS-SHHHHHHHHHHHTTS-SBEEEEEBB-TTSCB-BHHHHHHHHHHHT-EEEEHHHHHHH CS
  DHBP_synthase  97 DRalTirkladpkakpedfrrPGhvfplrareggvleRrghTEaavdLarlaglkpaavicellnddgtmarrdeleefakkhglkiitiedliey 192
                    DR +T+r++++++akp+d++rPGhvfplra++ggvl+R ghTEa++dL++lag+kpa+v+cel+nddgtmar +e+++fa++h++ ++tiedl++y
     CTQ29989.1 113 DRVTTVRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRGGHTEATIDLVTLAGFKPAGVLCELTNDDGTMARAPECIKFAQQHNMAVVTIEDLVAY 208
                    **********************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1678.44
//
Query:       CTQ29990.1  [L=90]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-28   99.5   4.7    1.2e-28   99.3   4.7    1.0  1  BMFP          Membrane fusogenic activity
  ------ inclusion threshold ------
      0.035   14.1   0.9      0.066   13.2   0.9    1.4  1  Sugarporin_N  Maltoporin periplasmic N-terminal extension
      0.085   13.3   0.2        2.6    8.6   0.0    2.3  2  MobC          Bacterial mobilisation protein (MobC)
       0.54   10.9   4.9        2.9    8.6   4.9    2.3  1  SlyX          SlyX


Domain annotation for each model (and alignments):
>> BMFP  Membrane fusogenic activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   4.7   2.8e-32   1.2e-28       1      76 [.       1      77 [.       1      78 [. 0.98

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 2.8e-32
        BMFP  1 mskprilddlakkvgdalpaaag.vreeieknvravlqealsklDLVtREEFdvqrevlartrekleaLearvaaLE 76
                m++p++++++a++v++++p++ + ++e++ek++r+ lq++l++lDLV+REEFdvq++vl+rtrekl+ Le+r++ LE
  CTQ29990.1  1 MIDPKKIEQIARQVHESMPKGLRdLGEDVEKKIRQALQSQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRLNDLE 77
                789*************************************************************************9 PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.9   1.5e-05     0.066      30      48 ..      64      82 ..      64      89 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
  Sugarporin_N 30 aRLaaLEkrLqeAeqraqa 48
                  ++La+LE+rL++ e+r +a
    CTQ29990.1 64 EKLALLEQRLNDLENRPAA 82
                  6899999999999999766 PP

>> MobC  Bacterial mobilisation protein (MobC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00059       2.6      13      37 ..       9      35 ..       7      45 .. 0.81
   2 ?    2.6   0.3     0.043   1.9e+02      23      44 ..      54      75 ..      53      76 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00059
        MobC 13 QIAraaN..sgqgsqavlaelkeelae 37
                QIAr+++  +++g  +  +++ + +++
  CTQ29990.1  9 QIARQVHesMPKGLRDLGEDVEKKIRQ 35
                *******99999999888888887765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.043
        MobC 23 gsqavlaelkeelaeinkeLdq 44
                ++ +vl ++ e la ++++L+ 
  CTQ29990.1 54 VQTQVLLRTREKLALLEQRLND 75
                567899999***********96 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.9   0.00064       2.9      29      62 ..      55      88 ..       4      90 .] 0.91

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00064
                HHHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXX CS
        SlyX 29 qqqqidrlqrqlrllaerlkeleessgaseaeee 62
                q q + r +++l+ll++rl++le++ +a++  ee
  CTQ29990.1 55 QTQVLLRTREKLALLEQRLNDLENRPAATPGSEE 88
                889999*****************99888777443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1011  (0.0563891); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 708.52
//
Query:       CTQ29991.1  [L=57]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       206  (0.0114898); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 453.62
//
Query:       CTQ29992.1  [L=477]
Description: fused heptose 7-phosphate kinase; heptose 1-phosphate adenyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-55  188.5   0.2    5.4e-55  186.8   0.0    1.8  2  PfkB             pfkB family carbohydrate kinase
    5.3e-15   55.9   0.0    9.9e-15   55.0   0.0    1.5  1  CTP_transf_like  Cytidylyltransferase-like
      3e-07   30.1   0.0    8.5e-07   28.6   0.0    1.7  2  Phos_pyr_kin     Phosphomethylpyrimidine kinase
    1.2e-05   24.9   0.1    2.3e-05   24.0   0.1    1.5  1  Carb_kinase      Carbohydrate kinase
  ------ inclusion threshold ------
       0.03   13.5   0.3       0.13   11.4   0.1    1.9  2  Pantoate_ligase  Pantoate-beta-alanine ligase
      0.035   14.0   0.0       0.13   12.1   0.0    1.9  2  FAD_syn          FAD synthetase
      0.091   12.1   0.0       0.21   10.9   0.0    1.7  1  DUF4394          Domain of unknown function (DUF4394)


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.8   0.0   2.1e-58   5.4e-55       4     300 ..      13     305 ..      10     307 .. 0.93
   2 ?   -0.8   0.0      0.29   7.5e+02     204     229 ..     324     348 ..     316     368 .. 0.69

  Alignments for each domain:
  == domain 1  score: 186.8 bits;  conditional E-value: 2.1e-58
                 EEEEEEEE..EEEEEECSSH...TTSEE.EESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEE CS
        PfkB   4 vvviGeal..idliavsekl...egelv.evktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglaliv 96 
                 v+v+G+++  +++++ ++++   ++ +v +v+++e ++GGa+ NvA+++a+lga ++++g  G D++++ l + l+  +v++d+v  +++++t ++l v
  CTQ29992.1  13 VLVVGDVMldRYWYGPTSRIspeAPVPVvKVENIEERPGGAA-NVAMNIASLGATSRLVGLTGIDDAARALSQALANVNVKCDFVS-VPTHPTITKLRV 109
                 899*****888999999999***777777*************.*******************************************.6777******** PP

                 ETTTSEEEEEEEEGGGGGHHHHHHH.HHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEEEHHHH CS
        PfkB  97 vdedgertivfnrgaaadltkeele.ededlleeadllyisgllsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkpneeEl 194
                 ++++++   + +++  +  +++++    +++l++   l++s    +    +++++++ +a+++g  +p+l dp+g     +++++  +a+ll+pn +E+
  CTQ29992.1 110 LSRNQQLIRLDFEEGFSGVDPQPMHeRIQQALGSIGALVLSD--YAKGALTSVQTMIRLAREAG--VPVLIDPKG----TDFERYR-GATLLTPNLSEF 199
                 ***9766667777777888888888899*************9..66668899************..*********....5799966.************ PP

                 HHHHTSCTHSHHHHHHHHHHHHHTTS.SEEEEEEGGGEEEEEE.TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHT CS
        PfkB 195 ealtgekledieealaalhklkakga.ktvvvtlGkeGalvve.kdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvq 291
                 ea++g++ +d++++++++ kl+a+++ + ++vt++++G+ + + +   l++p+ ++++v+D+tGAGD+++g ++a l++g++leea+ fana+A +vv 
  CTQ29992.1 200 EAVVGKC-QDEAQIVERGMKLIAEFElSALLVTRSEQGMTLLQpGRPPLHMPT-QAQEVYDVTGAGDTVIGVLAATLASGNTLEEACYFANAAAGVVVG 296
                 *******.6**********************************8999999999.99******************************************* PP

                 SSSSSTCSC CS
        PfkB 292 kkgaiaslp 300
                 k g+++ +p
  CTQ29992.1 297 KLGTSTVSP 305
                 ****98655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.29
                 SHHHHHHHHHHHHHTTSSEEEEEEGG CS
        PfkB 204 dieealaalhklkakgaktvvvtlGk 229
                 ++ee+++a+ +   k+ ++vv+t G+
  CTQ29992.1 324 SEEELKQAVAAA-RKRGEKVVMTNGV 348
                 455555555553.3355788888886 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   3.9e-18   9.9e-15       2      93 ..     345     435 ..     344     470 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 3.9e-18
                      EEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-...SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHHHHHHHTTTTEEEEEEEHH CS
  CTP_transf_like   2 agGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkk...kplasaeeRlemlelakevdevisvdpweltrevlkklkpdklylvigad 92 
                      ++G+FD++H GH  +l +a+kl++  liv+v+sd ++k+ k   +p+ ++e+R+  l +++ vd v+s+++++++r ++  + pd   lv g+d
       CTQ29992.1 345 TNGVFDILHAGHVSYLANARKLGDR-LIVAVNSDASTKRLKgetRPVNPLEQRMIVLGALEAVDWVVSFEEDTPQR-LIAGILPD--LLVKGGD 434
                      78***********************.**************669********************************9.999999**..*****98 PP

                      H CS
  CTP_transf_like  93 v 93 
                       
       CTQ29992.1 435 Y 435
                      5 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.3e-10   8.5e-07     119     225 ..     188     288 ..     174     293 .. 0.85
   2 ?   -4.1   0.0       3.1   7.9e+03     157     181 ..     426     451 ..     417     457 .. 0.59

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.3e-10
                   G-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHH.TT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BTHHHHHHHHHHHHHHCT CS
  Phos_pyr_kin 119 latvitPNlpEaeaLlgekikteedmkeaakkllk.lgakaVlikGghlegeeavvtdvlydgeeveeleaerietknthGtGCtlssaiaaelakg 214
                    at++tPNl E ea +g k+++e+++ e + kl++    +a l++ ++    +     +l  g    +++++  e  +  G+G+t+  ++aa la g
    CTQ29992.1 188 GATLLTPNLSEFEAVVG-KCQDEAQIVERGMKLIAeFELSALLVTRSE----QGM--TLLQPGRPPLHMPTQAQEVYDVTGAGDTVIGVLAATLASG 277
                   599**************.666666666666666654999999988776....233..57889999******************************** PP

                   SSHHHHHHHHH CS
  Phos_pyr_kin 215 esleeAvkkAk 225
                   ++leeA + A+
    CTQ29992.1 278 NTLEEACYFAN 288
                   ******99886 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3.1
                   SEEEEEEGGS.-SSSEEEEEEEETSS CS
  Phos_pyr_kin 157 kaVlikGghl.egeeavvtdvlydge 181
                      l+kGg+  +++ a +++v+ +g+
    CTQ29992.1 426 PDLLVKGGDYkPEQIAGSEEVWANGG 451
                   56799999872333333445555555 PP

>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1     9e-09   2.3e-05      80     218 ..     157     295 ..      78     311 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 9e-09
                  SHCHHHHCHHHCCCCS-EEEEGGGGGSGGGG...TTTTSSEEEE--HHHHHHHCTTTCHHCCSHHHHHHHHHHHHTTEEEE..E.STTSEEEECTTEE CS
  Carb_kinase  80 dekikklleevlekdeplviDAdgLnllaqknelserkaeviLTPhkkEfkrLlkaivkkeddrlelarelaqklnavvll..k.gekdvivspegev 174
                    +++ +++ ++e+ +p++iD  g  +  +       ++++ LTP+  Ef+  ++  +  e + +e + +l+++ +   ll  +  +  ++ +p+ + 
   CTQ29992.1 157 LTSVQTMIRLAREAGVPVLIDPKGTDFERY-------RGATLLTPNLSEFEAVVGKCQ-DEAQIVERGMKLIAEFELSALLvtRsEQGMTLLQPGRPP 246
                  556667888888888888888888666555.......69***************9999.788888888888777665555411314556889998888 PP

                  EEE---.-GGG-STTHHHHHHHHHHHHHHCTS....SHHHHHHHHHHHH CS
  Carb_kinase 175 linstg.ssalakGGsGDvLaGligalLaqne....asyeaaiaaawlh 218
                  l+++t  +    + G GD+  G+++a La+ +    a y a +aa +++
   CTQ29992.1 247 LHMPTQaQEVYDVTGAGDTVIGVLAATLASGNtleeACYFANAAAGVVV 295
                  8887752677899*****************9944444444444444444 PP

>> Pantoate_ligase  Pantoate-beta-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.26   6.7e+02     154     186 ..      84     116 ..      76     123 .. 0.84
   2 ?   11.4   0.1   5.1e-05      0.13       6      54 ..     325     374 ..     322     378 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.26
                      HHHHHTT-SSEEEEEEEEBETTSEBTTGGGGGS CS
  Pantoate_ligase 154 rlvkdlnlpveivavpivReedgLAlSSRNkyL 186
                      +  +++n++++ v+vp+      L + SRN++L
       CTQ29992.1  84 QALANVNVKCDFVSVPTHPTITKLRVLSRNQQL 116
                      556788999999999999999999999999998 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.1e-05
                      HHHHHHHHHHHHHTT-EEEEEEE-S...S-GHHHHHHHHHHHHHSSEEEEEE CS
  Pantoate_ligase   6 vaelrellkelrkegkkvglVpTmG...aLHeGHlsLvkaakeendvvvvSi 54 
                       +el+++++++rk+g+kv  V T G    LH+GH+s + +a++  d+++v++
       CTQ29992.1 325 EEELKQAVAAARKRGEKV--VMTNGvfdILHAGHVSYLANARKLGDRLIVAV 374
                      578999999999888764..5566622369****************999986 PP

>> FAD_syn  FAD synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.87   2.2e+03      80     138 ..     116     171 ..     105     179 .. 0.58
   2 ?   12.1   0.0   5.1e-05      0.13       5      35 ..     339     369 ..     335     414 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.87
     FAD_syn  80 vlvvdFtkefaelsaeeFiekllveklkvkavvvGfdfrfGkkregdvellkelgaklg 138
                 ++ +dF++ f+ ++++   e+ + ++l+    +v  d++ G+   ++v+++ +l+++ g
  CTQ29992.1 116 LIRLDFEEGFSGVDPQPMHER-IQQALGSIGALVLSDYAKGAL--TSVQTMIRLAREAG 171
                 556677777777777665555.445666666666566554433..44444444444444 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 5.1e-05
     FAD_syn   5 degavvtlGnFDGvHlGHqallkkaveaake 35 
                  e+ v+t G FD +H GH + l++a+++ ++
  CTQ29992.1 339 GEKVVMTNGVFDILHAGHVSYLANARKLGDR 369
                 5789*******************99998754 PP

>> DUF4394  Domain of unknown function (DUF4394)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.3e-05      0.21      42     109 ..      62     130 ..      53     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.3e-05
     DUF4394  42 glgskgrlytintatgaatavsk..lsvalsgttafgvDFNPaaDrlRvvsdtgqnlrlnvdtgavavDg 109
                  lg ++rl+ +     aa a+s+  ++v ++   +++v   P++ +lRv+s ++q +rl+ ++g   vD 
  CTQ29992.1  62 SLGATSRLVGLTGIDDAARALSQalANVNVKC-DFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFSGVDP 130
                 68889999999999999999999733444445.7899999*********************999877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3419.51
//
Query:       CTQ29993.1  [L=945]
Description: fused deadenylyltransferase; adenylyltransferase for glutamine synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   8.2e-199  657.7   7.1     3e-101  338.0   0.7    2.7  3  GlnE           Glutamate-ammonia ligase adenylyltransferase
    2.5e-59  199.6  10.9    7.2e-46  155.9   2.0    3.1  3  GlnD_UR_UTase  GlnD PII-uridylyltransferase


Domain annotation for each model (and alignments):
>> GlnE  Glutamate-ammonia ligase adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.9   0.2  1.5e-100   1.3e-96       3     249 ..      31     275 ..      29     277 .. 0.98
   2 !  338.0   0.7  3.4e-105    3e-101       2     250 ..     553     805 ..     552     806 .. 0.98
   3 ?   -4.1   0.0      0.96   8.6e+03      76     107 ..     887     918 ..     883     933 .. 0.72

  Alignments for each domain:
  == domain 1  score: 322.9 bits;  conditional E-value: 1.5e-100
                 HHHHHHHH-HHHHHHHHH-CHHHHHHCHCHHHTSGGGCCCHHHHHHHHTTTS-TCHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHH CS
        GlnE   3 qlaevlaaSpfvaellarrprlldelldkellaepkeleaaaaelaealaavedeeqliealRqfkreellriavadllglltveevsraLseLaeavi 101
                 q ++v+a+S+fv++ ++ +p +l+el+d+  ++ ++e+ +++a+l+e+l+av+de+ l+++lR f+r+ ++ria+a+ l l+  ee++++Ls Lae++i
  CTQ29993.1  31 QARSVMAFSDFVEQSVIAQPGWLNELADS--APAAEEWRHYEAWLQERLQAVTDEAGLMRELRLFRRQMMVRIAWAQALSLVREEETLQQLSVLAETLI 127
                 5689*************************..******************************************************************** PP

                 HHHHHHHHHHHHHHCTSCCCCTTCC-SEEEEE-HHHHTT---TT--EEEEEEE---TT-BSSSS-SBHHHHHHHHHHHHHHHHH--BTTB-S--EE-TT CS
        GlnE 102 eaaldlllrqvvaelgtpvdekgepqqllvlGmGklGgaELnysSDiDliflydedaeteggkksidaakfftrlaqrlisiLsartadGvlYevDlrL 200
                  aa+d+l++++++e+gtp++++g+pq ll+lGmGklGg ELn+sSDiDlif ++e++ t+gg++++d+a+fftrl+qrli++L+++t+dG++Y+vD+rL
  CTQ29993.1 128 VAARDWLYAACCKEWGTPCNAEGQPQPLLILGMGKLGGGELNFSSDIDLIFAWPEHGATRGGRRELDNAQFFTRLGQRLIKALDQPTQDGFVYRVDMRL 226
                 *************************************************************************************************** PP

                 STTGGGS-SEEEHHHHHHHHHHC--HHHHHHHCT-EECCE-HCHHHHHH CS
        GlnE 201 RPsGesGplvlsvaAfekYyeeeartWErqAlirArvvagdaelkaafl 249
                 RP+G+sGplvls+aA+e+Yy+e++r+WEr+A+++Ar+++++  + a+ l
  CTQ29993.1 227 RPFGDSGPLVLSFAALEDYYQEQGRDWERYAMVKARIMGDNDGAYASEL 275
                 ***************************************9988887766 PP

  == domain 2  score: 338.0 bits;  conditional E-value: 3.4e-105
                 HHHHHHHHH-HHHHHHHHH-CHHHHHHCHCHHHTSGGGCCCHHHHHHHHTTTS-TC..HHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH CS
        GlnE   2 kqlaevlaaSpfvaellarrprlldelldkellaepkeleaaaaelaealaavede..eqliealRqfkreellriavadllglltveevsraLseLae 98 
                 k+l++++aaSp+va++lar+p lldelld+++l++p++++a++ el+++l++v+ e  eq++ealRqfk++++l ia+ad++g+l+v++vs++L++Lae
  CTQ29993.1 553 KHLITLCAASPMVASQLARHPLLLDELLDPNTLYQPTATDAYRDELRQYLLRVPVEdeEQQLEALRQFKQAQQLHIAAADIAGTLPVMKVSDHLTWLAE 651
                 79**************************************************976666***************************************** PP

                 HHHHHHHHHHHHHHHHHCTSCCCCT.TCC-SEEEEE-HHHHTT---TT--EEEEEEE---TT-B.SSSS-SBHHHHHHHHHHHHHHHHH--BTTB-S-- CS
        GlnE  99 avieaaldlllrqvvaelgtpvdek.gepqqllvlGmGklGgaELnysSDiDliflydedaete.ggkksidaakfftrlaqrlisiLsartadGvlYe 195
                 a+++a++++++ q+va++g p++ + ++ ++++v+G+GklGg+EL+ysSD+Dl+fl+d++ae++ +g+++id+++f++rlaqr+++++s+rt++G+lYe
  CTQ29993.1 652 AILDAVVQQAWGQMVARYGLPTHLHdRQGRGFAVVGYGKLGGWELGYSSDLDLVFLHDCPAEVMtDGEREIDGRQFYLRLAQRIMHLFSTRTSSGILYE 750
                 ************************999999**********************************9********************************** PP

                 EE-TTSTTGGGS-SEEEHHHHHHHHHHC--HHHHHHHCT-EECCE-HCHHHHHHH CS
        GlnE 196 vDlrLRPsGesGplvlsvaAfekYyeeeartWErqAlirArvvagdaelkaafle 250
                 vD+rLRPsG++G+lv++ +Af++Y+++ea+tWE+qAl+rArvv+gd++l+a+f++
  CTQ29993.1 751 VDARLRPSGAAGMLVTTADAFADYQQNEAWTWEHQALVRARVVYGDPALQARFDA 805
                 ****************************************************986 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 0.96
                 HHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHH CS
        GlnE  76 avadllglltveevsraLseLaeavieaaldl 107
                 a  d++   +++ +++a + L +a+ + al+ 
  CTQ29993.1 887 AQNDIMDEEEARALTHAYTTLRDALHHLALQE 918
                 66677777777777888888888887777765 PP

>> GlnD_UR_UTase  GlnD PII-uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.34     3e+03      44      71 ..     101     128 ..      82     134 .. 0.65
   2 !  155.9   2.0     8e-50   7.2e-46       1     146 []     297     436 ..     297     436 .. 0.99
   3 !   48.6   0.1   9.8e-17   8.8e-13       1      95 [.     825     916 ..     824     920 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.34
  GlnD_UR_UTase  44 lirGgrdpelrerstlealeelvergll 71 
                    +++ +    +re++tl++l+ l+e+ ++
     CTQ29993.1 101 IAWAQALSLVREEETLQQLSVLAETLIV 128
                    3443334446788888888888876555 PP

  == domain 2  score: 155.9 bits;  conditional E-value: 8e-50
  GlnD_UR_UTase   1 rfmkakieeekarrgrsdtllepniKlGpGGlRdiefivqvlqlirGgrdpelrerstlealeelvergllteeeakelreayrflrrlehrLqll 96 
                    r+mk +i++e++rrg +d     niKlG+GG+R+iefivqv+qlirGgr+p+l++r++l +l+++ e+ ll+e +a  lr+ay flrrle+ Lq +
     CTQ29993.1 297 RNMKGMIAREVRRRGLKD-----NIKLGAGGIREIEFIVQVFQLIRGGREPALQQRALLPTLAAIDELHLLPEGDATLLRAAYLFLRRLENLLQSI 387
                    68****************.....************************************************************************* PP

  GlnD_UR_UTase  97 adrqthrLpfdeeeqrrlaealgyredkaafmkelfqhaerVrrlfekll 146
                    +d+qt++Lp+de +++rla  +   +d++++ ++l+ h+ +Vrr+f++l+
     CTQ29993.1 388 NDEQTQTLPQDELNRARLAWGMHT-DDWETLSAQLANHMANVRRVFNELI 436
                    ***********************9.**********************986 PP

  == domain 3  score: 48.6 bits;  conditional E-value: 9.8e-17
  GlnD_UR_UTase   1 rfmkakieeekarrgrsdtllepniKlGpGGlRdiefivqvlqlirGgrdpel.rerstlealeelvergllteeeakelreayrflrrlehrLql 95 
                    r+m++k++++ + ++  +    ++iK  +GG+ diefi q l l +   +p+l r +++++ le l+++++++eeea++l +ay+ lr+  h+L l
     CTQ29993.1 825 REMREKMRAHLGNKHPNR----FDIKADAGGITDIEFITQYLVLRYASDKPKLtRWSDNVRILELLAQNDIMDEEEARALTHAYTTLRDALHHLAL 916
                    578888888888776666....9*****************************98999************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 6684.71
//
Query:       CTQ29994.1  [L=432]
Description: putative adenylate cyclase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-32  112.6   0.1    3.7e-32  111.7   0.1    1.5  1  CYTH      CYTH domain


Domain annotation for each model (and alignments):
>> CYTH  CYTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.1   2.1e-36   3.7e-32       2     179 .]       3     196 ..       2     196 .. 0.94

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 2.1e-36
                 EEEEEEEEE-HHHHHHHHHHHHHCTCEEEEEEEEEEEEEE-TTTHHHHTTEEEEEEEETTTEEE.EEEEEECSSSTEEEEEEEECCCEEECCCC..... CS
        CYTH   2 iEvEvKflvsaaeyedlelrlaelrakeettveqrdtYydtpdrdlartdeaLRiRraegdgee.ltlKgpgvdgereevegevsreEyeepls..... 94 
                 +E+E+Kf v ++  e+l++ l+ l+ak+    ++ ++Yy+t d++l+r+d+ LRiR   ++g + +tlK +g     + v g+++r+Ey+ pl+     
  CTQ29994.1   3 QEIELKFIVAQDGVETLREQLNALEAKHTPAGQLLNIYYETADNWLRRHDMGLRIR--GDQGRYeMTLKIAG-----RVVGGLHQRPEYNIPLDkpela 94 
                 8********99999999888************************************..5677777*******.....99***************99999 PP

                 .......HHHHHHHHHHHTT..-EEEEEEEEEEEEEEETT....EEEEEEEETTT......TEEEEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGB CS
        CYTH  95 .......daaeaaelldglg..lepvasvkklRrkykleg....vevalDavefl......egeevEiElevedeeevkeaaekllallrelglssask 174
                        +++++  l+++l+   +p++s+++ R+++ + +    +e+alD++e+       +++e+E+El ++++++++ +a   l ++  l++ s sk
  CTQ29994.1  95 lerlpaeVWPQGE-LPAALAehVQPLFSTDFARERWVIQEgkseIEIALDRGEVKagehqePICELELELLAGETADLLRLAHR-LLESGVLRQGSLSK 191
                 9999999888866.9999999*****************444677****************************************.99************ PP

                 SCSHH CS
        CYTH 175 irrsy 179
                 ++r+y
  CTQ29994.1 192 AARGY 196
                 ***99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3155.87
//
Query:       CTQ29995.1  [L=206]
Description: putative signal transduction protein (SH3 domain) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-10   39.6   0.3    7.9e-10   38.9   0.3    1.3  1  SH3_3            Bacterial SH3 domain
    0.00044   20.6   0.7     0.0074   16.7   0.2    2.2  2  Cep57_MT_bd      Centrosome microtubule-binding domain of Cep
    0.00072   19.8   0.6     0.0015   18.8   0.6    1.5  1  DUF948           Bacterial protein of unknown function (DUF94
     0.0015   18.3   0.0     0.0034   17.2   0.0    1.6  1  SH3_4            Bacterial SH3 domain
     0.0028   17.6   0.4     0.0045   17.0   0.4    1.3  1  Ax_dynein_light  Axonemal dynein light chain
     0.0045   16.4   0.3     0.0045   16.4   0.3    1.6  1  DUF4407          Domain of unknown function (DUF4407)
     0.0087   16.1   1.5      0.015   15.3   1.5    1.4  1  TolA_bind_tri    TolA binding protein trimerisation
     0.0096   16.5   0.2      0.012   16.2   0.2    1.2  1  DUF2408          Protein of unknown function (DUF2408)
  ------ inclusion threshold ------
       0.01   16.0   5.0      0.019   15.2   5.0    1.4  1  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
      0.013   13.0   1.5      0.018   12.6   1.5    1.1  1  DUF3584          Protein of unknown function (DUF3584)
      0.016   15.3   5.7      0.017   15.2   1.9    2.1  2  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
      0.017   15.3   1.1       0.54   10.5   0.2    2.3  2  HALZ             Homeobox associated leucine zipper
       0.02   15.0   4.2      0.037   14.1   3.7    1.6  1  ADIP             Afadin- and alpha -actinin-Binding
      0.021   15.1   2.9       0.18   12.1   1.6    2.1  2  DUF5082          Domain of unknown function (DUF5082)
      0.021   15.4   1.0       0.07   13.7   0.0    2.2  2  GW               GW (Gly-Tryp) dipeptide domain
      0.025   14.5   2.1        0.8    9.7   0.0    2.3  2  Prefoldin_2      Prefoldin subunit
      0.026   14.2   0.2      0.076   12.7   0.1    1.7  2  dCache_3         Double sensory domain of two-component senso
      0.031   14.2   1.0      0.045   13.7   1.0    1.1  1  CEP63            Centrosomal protein of 63 kDa
      0.045   11.7   2.6      0.054   11.5   2.6    1.0  1  Prominin         Prominin
      0.048   13.0   5.1      0.076   12.3   4.6    1.5  1  GAS              Growth-arrest specific micro-tubule binding
      0.061   13.7   2.0        1.4    9.4   0.4    2.4  2  FlaC_arch        Flagella accessory protein C (FlaC)
      0.077   13.1   1.9       0.11   12.5   1.9    1.3  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
      0.089   12.2   3.5       0.46    9.8   3.4    1.8  1  Phlebovirus_NSM  Phlebovirus nonstructural protein NS-M
       0.11   12.1   2.4       0.16   11.6   2.4    1.1  1  BAR              BAR domain
       0.13   12.3   4.7        2.1    8.4   2.2    2.4  2  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
       0.13   12.7   5.5       0.87   10.0   0.1    2.5  2  LPP              Lipoprotein leucine-zipper
       0.18   11.9   2.0         14    5.8   0.0    2.3  2  Swi5             Swi5
       0.18   11.8   1.4       0.31   11.0   1.4    1.4  1  TnpV             Transposon-encoded protein TnpV
       0.31   12.1   1.0         16    6.6   0.0    2.4  2  DUF5320          Family of unknown function (DUF5320)
       0.43   10.7   5.1        3.3    7.8   5.7    1.9  2  DivIVA           DivIVA protein
       0.53   10.3   4.2       0.79    9.8   4.2    1.2  1  DUF1664          Protein of unknown function (DUF1664)
       0.55   10.4   4.7       0.86    9.8   4.7    1.2  1  Fib_alpha        Fibrinogen alpha/beta chain family
       0.56   11.1   5.4        3.7    8.5   2.7    2.3  2  PRKG1_interact   cGMP-dependent protein kinase interacting do
       0.56   10.1   4.9       0.58   10.1   3.5    1.8  1  GIT_CC           GIT coiled-coil Rho guanine nucleotide excha
       0.62   10.1   6.7        7.9    6.5   6.3    2.3  1  FlxA             FlxA-like protein


Domain annotation for each model (and alignments):
>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.3   1.6e-12   7.9e-10       4      54 ..      35      85 ..      32      86 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.6e-12
       SH3_3  4 nvRsgPstssevigtlpyGekVevleetgggeWykvrtddgteGwvssgyl 54
                 vRsgP+ +++ +gt+++Ge+V+vl   + + + ++r+++g+++w+  + l
  CTQ29995.1 35 WVRSGPGDNYRLVGTINAGEEVSVLQTNDSTSYAQIRDSNGRTAWIPLKEL 85
                69***************************999**************87666 PP

>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.59     3e+02      12      46 ..      90     124 ..      83     129 .. 0.72
   2 !   16.7   0.2   1.4e-05    0.0074      15      54 ..     132     171 ..     131     173 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.59
  Cep57_MT_bd  12 aLaevlkeLedEfehlklelqelaaqynaldpslg 46 
                  +L + +  Le++++ l  +l    a+ n+ ++ ++
   CTQ29995.1  90 SLRTRVPDLENQVKTLTDKLNNIDATWNQRTADMQ 124
                  67777778888888888888888887777775554 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.4e-05
  Cep57_MT_bd  15 evlkeLedEfehlklelqelaaqynaldpslgkrkRkdLa 54 
                  +v+++L+dE ++lk el   +++ na +  l+ ++R++++
   CTQ29995.1 132 SVINALKDENQKLKNELVVAQKKVNAANLQLDDKQRTIIM 171
                  79**********************************9986 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.6   2.8e-06    0.0015      31      83 ..      91     143 ..      80     148 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.8e-06
      DUF948  31 aaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlges 83 
                 +++++ +le+qv+ ++++++++ a+ n+ ++d+++k++  d++++a++d  ++
  CTQ29995.1  91 LRTRVPDLENQVKTLTDKLNNIDATWNQRTADMQKKVAGSDSVINALKDENQK 143
                 788999****************************************9986665 PP

>> SH3_4  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.6e-06    0.0034       7      55 ..      36      86 ..      30      87 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.6e-06
       SH3_4  7 lrsgPskkaaviayleaGvpvrvvackg..nWcrvrDadGatGWiyqsllw 55
                +rsgP+++++ + ++ aG  v+v ++++     ++rD++G t+Wi   +l+
  CTQ29995.1 36 VRSGPGDNYRLVGTINAGEEVSVLQTNDstSYAQIRDSNGRTAWIPLKELS 86
                8**********************988773369*************988887 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.4   8.7e-06    0.0045     129     185 ..      89     148 ..      80     150 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.7e-06
  Ax_dynein_light 129 keLeeekeelekqvaelkaklealekreker...rqeeekkheeeieflkksnqqlkeql 185
                       +L++++ +le+qv++l+ kl+++++  ++r   +q++    +  i++lk +nq+lk++l
       CTQ29995.1  89 PSLRTRVPDLENQVKTLTDKLNNIDATWNQRtadMQKKVAGSDSVINALKDENQKLKNEL 148
                      468889999999999999998888776655511156666667899************998 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   8.7e-06    0.0045     130     208 ..      73     164 ..      51     186 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.7e-06
     DUF4407 130 a.................ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkaklda 208
                 +                 l++++ +le+q++ l  ++++ +a++++ +a++qk++ g      + ++   ++ ++ k++l  aq+++++++ +ld 
  CTQ29995.1  73 SngrtawiplkelsnepsLRTRVPDLENQVKTLTDKLNNIDATWNQRTADMQKKVAGSD----SVINALKDENQKLKNELVVAQKKVNAANLQLDD 164
                 34666677777777777799999999999999999999999999999999999988732....234444555555555555555555555555442 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.5     3e-05     0.015       5      67 ..     101     167 ..      90     171 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3e-05
  TolA_bind_tri   5 rvarLErilears....qlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlYldlDerlr 67 
                    +v++L  +l++ +    q   ++q+++    + ++ L+ ++++l+++l  ++++ +   l+lD   r
     CTQ29995.1 101 QVKTLTDKLNNIDatwnQRTADMQKKVAGSDSVINALKDENQKLKNELVVAQKKVNAANLQLDDKQR 167
                    44444444444445555*************************************9999999998776 PP

>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   2.3e-05     0.012      39     100 ..      66     154 ..       3     170 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.3e-05
     DUF2408  39 e...............................vkeelkelkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcfdlvedlkaqdge 100
                 +                               +++++k l ++L++i+++ ++     + + ++ v  +++v+n L d++ +l ++l   +++
  CTQ29995.1  66 SyaqirdsngrtawiplkelsnepslrtrvpdLENQVKTLTDKLNNIDATWNQ----RTADMQKKVAGSDSVINALKDENQKLKNELVVAQKK 154
                 04444455566667777777777777777777899999999999999998888....344555688999*****************9888622 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   5.0   3.8e-05     0.019      29     104 ..      93     169 ..      81     171 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.8e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT.S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTS CS
  Seryl_tRNA_N  29 delleldekrrelqveleelqaerNelskeIgkakkkk.edaeeliaevkelkeelkaleaelkeleaeleklllai 104
                    ++ +l+++ ++l  +l+++ a  N+ ++ ++k+ +     +++l++e ++lk+el  +++++++++ +l+++ ++i
    CTQ29995.1  93 TRVPDLENQVKTLTDKLNNIDATWNQRTADMQKKVAGSdSVINALKDENQKLKNELVVAQKKVNAANLQLDDKQRTI 169
                   677789**************************999877899*******************************99998 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.5   3.6e-05     0.018     348     425 ..      83     159 ..      79     171 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.6e-05
     DUF3584 348 adldqlpsirseleeleeeldaltekhqdvqekydrrkqkikeeleeeleklkerleaireekdrl...kaaieealeale 425
                 ++l+++ps+r+ + +le++++ lt+k +++++ +++r + ++++ +   + +++     ++e+++l   + +++++++a +
  CTQ29995.1  83 KELSNEPSLRTRVPDLENQVKTLTDKLNNIDATWNQRTADMQKKVAGSDSVINAL----KDENQKLkneLVVAQKKVNAAN 159
                 589999*****************************99998887776555555544....3333333111222333333333 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   1.9   3.4e-05     0.017      68     125 ..      90     147 ..      81     148 .. 0.93
   2 ?    7.7   1.7    0.0069       3.5      59      93 ..     134     168 ..     132     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.4e-05
  TPR_MLP1_2  68 elkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneqNklLhdQ 125
                 +l++++ +l++++++++ +l++  + w+++   ++k+++ + + i+ l++ N+ L + 
  CTQ29995.1  90 SLRTRVPDLENQVKTLTDKLNNIDATWNQRTADMQKKVAGSDSVINALKDENQKLKNE 147
                 6899999*********************************************999775 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0069
  TPR_MLP1_2  59 lqalreelnelkaeiaelkaeaesakaeleesees 93 
                 ++al++e ++lk+e+  +++++++a+ +l+ ++  
  CTQ29995.1 134 INALKDENQKLKNELVVAQKKVNAANLQLDDKQRT 168
                 6899**********************999998865 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.19     1e+02      30      42 ..      97     109 ..      90     110 .. 0.88
   2 ?   10.5   0.2    0.0011      0.54      22      35 ..     135     148 ..     131     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.19
        HALZ  30 kLkaelqeLkekl 42 
                  L++++++L++kl
  CTQ29995.1  97 DLENQVKTLTDKL 109
                 599********98 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0011
        HALZ  22 dsLkkenekLkael 35 
                 ++Lk+en+kLk+el
  CTQ29995.1 135 NALKDENQKLKNEL 148
                 69***********8 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   3.7   7.2e-05     0.037      72     130 ..      91     153 ..      82     159 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.2e-05
        ADIP  72 lqskierlktqleqlerel...a.lvqakerqlekklktleqklknekeelqrlknalqqikt 130
                 l++++  l++q++ l+ +l   + ++++++++++kk++  ++ ++ +k+e+q+lkn l   ++
  CTQ29995.1  91 LRTRVPDLENQVKTLTDKLnniDaTWNQRTADMQKKVAGSDSVINALKDENQKLKNELVVAQK 153
                 66677777777777665543325599******************************9875555 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1       0.4     2e+02      97     119 ..      95     117 ..      88     121 .. 0.77
   2 ?   12.1   1.6   0.00035      0.18      78     120 ..     122     164 ..     110     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.4
     DUF5082  97 IerLenqiseaqgvldtlqsqln 119
                 + +Lenq+++++ +l++++  +n
  CTQ29995.1  95 VPDLENQVKTLTDKLNNIDATWN 117
                 55788888888888888888776 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00035
     DUF5082  78 syqtyvdkldelidaieeEIerLenqiseaqgvldtlqsqlns 120
                 ++q+ v   d++i a+++E ++L+n++  aq++++  + ql++
  CTQ29995.1 122 DMQKKVAGSDSVINALKDENQKLKNELVVAQKKVNAANLQLDD 164
                 567778889***************************9999986 PP

>> GW  GW (Gly-Tryp) dipeptide domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   0.00014      0.07      41      75 ..      53      85 ..      42      86 .. 0.75
   2 ?   -0.3   0.3       3.4   1.8e+03      30      52 ..     146     168 ..      99     174 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00014
                TSEEEEEEEEEETTEE.EEEEEETTEEEEEEEGGGE CS
          GW 41 gktvtVlkeaktkrgt.YaqvsddgktiGWidkral 75
                g++v Vl+   t+++t Yaq++d++  + Wi  ++l
  CTQ29995.1 53 GEEVSVLQ---TNDSTsYAQIRDSNGRTAWIPLKEL 85
                56666664...445555******666666**98877 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 3.4
                 CCEEEEGGGGTTSEEEEEEEEEE CS
          GW  30 aktlgaskkyngktvtVlkeakt 52 
                 ++ ++a kk+n  +++ + +++t
  CTQ29995.1 146 NELVVAQKKVNAANLQLDDKQRT 168
                 22233336666666666655555 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0016       0.8      64     104 ..      88     128 ..      85     130 .. 0.91
   2 ?    6.1   1.6      0.02        10      65     102 ..     121     158 ..     117     162 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0016
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTS CS
  Prefoldin_2  64 keeLeerketlekeiktlekqleklekeleelkeelqkklq 104
                  ++ L +r  +le ++ktl+++l ++ ++ ++  +  qkk+ 
   CTQ29995.1  88 EPSLRTRVPDLENQVKTLTDKLNNIDATWNQRTADMQKKVA 128
                  57899999**********************99999999986 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.02
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
  Prefoldin_2  65 eeLeerketlekeiktlekqleklekeleelkeelqkk 102
                  ++ +++ +  + +i++l+++ +kl++el   +++++++
   CTQ29995.1 121 ADMQKKVAGSDSVINALKDENQKLKNELVVAQKKVNAA 158
                  5778999999******************9999999875 PP

>> dCache_3  Double sensory domain of two-component sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.1   1.6e+03     197     224 ..      61      88 ..      43      90 .. 0.70
   2 ?   12.7   0.1   0.00015     0.076       8      83 ..      98     176 ..      96     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.1
    dCache_3 197 lgklfreleidgrsylvvllpLkdysge 224
                    ++ + +i +   +++ +pLk  s+e
  CTQ29995.1  61 TNDSTSYAQIRDSNGRTAWIPLKELSNE 88 
                 3467888889999998889999888776 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00015
    dCache_3   8 Leaslqtaenlleqeed...qllalle.lvasspgvaeaisegdreqlerlldsiwndlgleqivlldadgtvilrlhep 83 
                 Le++ +t +++l+++++   q  a ++  va s++v++a+ ++ +++l++ l  +++  ++++++l d++ t+i +++++
  CTQ29995.1  98 LENQVKTLTDKLNNIDAtwnQRTADMQkKVAGSDSVINAL-KDENQKLKNELVVAQKKVNAANLQLDDKQRTIIMQWFMY 176
                 56666666677777765222566667779***********.99999******************************9885 PP

>> CEP63  Centrosomal protein of 63 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.0   8.8e-05     0.045     148     217 ..      92     163 ..      86     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.8e-05
       CEP63 148 qkqvasleaqrkaLaekleliqsaaykvqlekrkqkL...esveldsqseiqrLrskleraqdtleaqelele 217
                 ++ v  le q k+L++kl+ i + ++++  +++++k+   +sv  + + e q+L+ +l  aq++++a +l+l+
  CTQ29995.1  92 RTRVPDLENQVKTLTDKLNNIDA-TWNQRTADMQKKVagsDSVINALKDENQKLKNELVVAQKKVNAANLQLD 163
                 678999***************98.9999998888887222445557899*******************99985 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.6   0.00011     0.054     636     717 ..      91     171 ..      55     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
    Prominin 636 lanelsngkknlkqslkneaqdlraiqqelvlplessvkklkksvkkldeensdlqesikkllaaveraenflkkngseiin 717
                 l ++++   +n  + l+ + ++++a  ++++  ++++v+   + +++l++en++l++++    ++v++a+  l+++  +ii 
  CTQ29995.1  91 LRTRVPDL-ENQVKTLTDKLNNIDATWNQRTADMQKKVAGSDSVINALKDENQKLKNELVVAQKKVNAANLQLDDKQRTIIM 171
                 33333222.34445556666666666667777799999999**********************************9999996 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.6   0.00015     0.076      25      82 ..     109     167 ..     102     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
         GAS  25 LelIk.slKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyek 82 
                 L+ I+ ++ +  ++++kk +  +  +++++ en++lk +L  a+++v+  + ql + ++
  CTQ29995.1 109 LNNIDaTWNQRTADMQKKVAGSDSVINALKDENQKLKNELVVAQKKVNAANLQLDDKQR 167
                 5555425566789************************************9999998776 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1      0.18        90       1      20 [.      94     113 ..      83     118 .. 0.57
   2 ?    9.4   0.4    0.0027       1.4       1      30 [.     119     148 ..     119     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.18
   FlaC_arch   1 ridelEnklsklsteletvk 20 
                 r+ +lEn+++ l  +l+++ 
  CTQ29995.1  94 RVPDLENQVKTLTDKLNNID 113
                 34444444444444444443 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0027
   FlaC_arch   1 ridelEnklsklsteletvkkeneelsksv 30 
                 r+ ++++k+   ++ ++ +k+en++l++++
  CTQ29995.1 119 RTADMQKKVAGSDSVINALKDENQKLKNEL 148
                 667899*********************997 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.9   0.00022      0.11      69     142 ..      87     164 ..      60     172 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00022
     UPF0242  69 kleekeaklteldeglktkeealeel....qeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelklelee 142
                 + ++    + +l++++kt  ++l++     ++++ +++++++  ++ ++ lk enq+L+ +l  +++ +++  l+l++
  CTQ29995.1  87 NEPSLRTRVPDLENQVKTLTDKLNNIdatwNQRTADMQKKVAGSDSVINALKDENQKLKNELVVAQKKVNAANLQLDD 164
                 445555666777788888888888872222455667777788899*********************999888887776 PP

>> Phlebovirus_NSM  Phlebovirus nonstructural protein NS-M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.4   0.00089      0.46     179     234 ..     101     157 ..      74     186 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00089
  Phlebovirus_NSM 179 qlknelqkkRn.dikrgqekrdakklveesmArvkdlkeelkiltdelsqikseiqi 234
                      q+k   +k+ n d    q+  d++k v  s+  ++ lk+e+++l +el  ++++++ 
       CTQ29995.1 101 QVKTLTDKLNNiDATWNQRTADMQKKVAGSDSVINALKDENQKLKNELVVAQKKVNA 157
                      333333343332355678888888888888888888888888888887666555443 PP

>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.4   0.00031      0.16     132     196 ..      92     164 ..      83     170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00031
         BAR 132 ekefkeiqkerkklehkrlDyDaakarlkklktkkskkakde.........ekaeeelrkAqqkfeesneelka 196
                  + ++++++++k l +k+  +Da+ ++      +k+   +d+         +k+++el +Aq+k++  n +l +
  CTQ29995.1  92 RTRVPDLENQVKTLTDKLNNIDATWNQRTA-DMQKKVAGSDSvinalkdenQKLKNELVVAQKKVNAANLQLDD 164
                 56789******************9877553.3333334444467778888******************999876 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2     0.067        34      37      60 ..      90     113 ..      83     126 .. 0.81
   2 ?    8.4   2.2    0.0042       2.1       2      27 ..     122     147 ..     121     169 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.067
  TMF_DNA_bd  37 kLrkknkelekeikelkkklekle 60 
                 +Lr  + +le+++k+l++kl++ +
  CTQ29995.1  90 SLRTRVPDLENQVKTLTDKLNNID 113
                 589999999999999999998765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0042
  TMF_DNA_bd   2 slekklkeKDeqIaqLmeEGekLskk 27 
                 +++kk++  D  I++L+ E +kL+ +
  CTQ29995.1 122 DMQKKVAGSDSVINALKDENQKLKNE 147
                 57777777777777777777777654 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1    0.0017      0.87       4      32 ..      97     125 ..      94     129 .. 0.90
   2 ?    3.6   2.1      0.18        90       9      33 ..     134     158 ..     130     165 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0017
         LPP   4 eLssqVsqLkskvdqlssdvnsakaaaqa 32 
                  L +qV++L +k +++ +  n+  a++q+
  CTQ29995.1  97 DLENQVKTLTDKLNNIDATWNQRTADMQK 125
                 799******************99999986 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.18
         LPP   9 VsqLkskvdqlssdvnsakaaaqaa 33 
                 +++Lk++ ++l++++  a++ ++aa
  CTQ29995.1 134 INALKDENQKLKNELVVAQKKVNAA 158
                 7899999999999999998888887 PP

>> Swi5  Swi5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.028        14       2      30 ..      92     120 ..      91     129 .. 0.79
   2 ?    5.2   0.6     0.044        22       5      38 ..     134     167 ..     130     171 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.028
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Swi5   2 eaeikeleeqleelekelaelkeelkekk 30 
                 ++++ +le+q+++l ++l+++++  ++++
  CTQ29995.1  92 RTRVPDLENQVKTLTDKLNNIDATWNQRT 120
                 688999***************99999765 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.044
                 HHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHH CS
        Swi5   5 ikeleeqleelekelaelkeelkekkdpeetvkr 38 
                 i++l+++ ++l++el  ++++ ++ +   + ++r
  CTQ29995.1 134 INALKDENQKLKNELVVAQKKVNAANLQLDDKQR 167
                 7889999999999999999998876644444444 PP

>> TnpV  Transposon-encoded protein TnpV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.4   0.00061      0.31      50      90 ..     103     143 ..     100     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00061
        TnpV  50 gkLnehlaeideqaeerlerlvkqlaekegvteelkakdqm 90 
                 ++L+++l++id + ++r  ++ k++a +++v ++lk ++q 
  CTQ29995.1 103 KTLTDKLNNIDATWNQRTADMQKKVAGSDSVINALKDENQK 143
                 589***********************************995 PP

>> DUF5320  Family of unknown function (DUF5320)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.031        16      63      95 ..      83     115 ..      65     119 .. 0.77
   2 ?    4.2   0.4      0.19        95      64      96 ..     123     155 ..     114     158 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.031
     DUF5320  63 aaetaeaskeeekelLeeqaeaLeeeleaikkr 95 
                 ++ ++e+s +++   Le+q ++L ++l++i++ 
  CTQ29995.1  83 KELSNEPSLRTRVPDLENQVKTLTDKLNNIDAT 115
                 456788899999999**************9976 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.19
     DUF5320  64 aetaeaskeeekelLeeqaeaLeeeleaikkrl 96 
                  +++ a +++ +++L+++ + L++el   +k++
  CTQ29995.1 123 MQKKVAGSDSVINALKDENQKLKNELVVAQKKV 155
                 4566677788899*************9888876 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       1.6   8.2e+02      40      58 ..      94     112 ..      86     117 .. 0.74
   2 ?    7.8   5.7    0.0064       3.3      39      91 ..     118     170 ..      99     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1.6
                 HHHHHHHHHHCCCCTXXXX CS
      DivIVA  40 eneelkekvkeleeklkey 58 
                 ++ +l+++vk+l++kl++ 
  CTQ29995.1  94 RVPDLENQVKTLTDKLNNI 112
                 5567888888888888876 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0064
                 HHHHHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  39 keneelkekvkeleeklkeykeleetLkktlvvaqetaeevkanakkeaelii 91 
                 ++ +++++kv+  ++ ++  k+ +++Lk+ lvvaq+  + +  +  +++++ii
  CTQ29995.1 118 QRTADMQKKVAGSDSVINALKDENQKLKNELVVAQKKVNAANLQLDDKQRTII 170
                 56789999****************************99988887777777766 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.2    0.0015      0.79      38     104 ..      97     163 ..      92     172 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0015
     DUF1664  38 slsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedve 104
                  l++ v++++ +l+++ ++ ++   +++++++  d+ +++ k+  +++k+e+  +++++++ + +++
  CTQ29995.1  97 DLENQVKTLTDKLNNIDATWNQRTADMQKKVAGSDSVINALKDENQKLKNELVVAQKKVNAANLQLD 163
                 58999***************************************************99998776665 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.7    0.0017      0.86      29     106 ..      87     164 ..      85     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0017
                 CCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHH CS
   Fib_alpha  29 yekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirv 106
                  e+++++++ +len++++++++ ++++ + ++ +  +++k + ++   n++k+ +++l++e +  +++++a   ++  
  CTQ29995.1  87 NEPSLRTRVPDLENQVKTLTDKLNNIDATWNQRTADMQKKVAGSDSVINALKDENQKLKNELVVAQKKVNAANLQLDD 164
                 577889999999999999999999999999999999999999999889999999999**********99988766655 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   2.7    0.0072       3.7      54      89 ..     108     147 ..      81     148 .. 0.60
   2 ?    7.8   1.1     0.012       6.1       9      38 ..     137     166 ..     131     172 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0072
  PRKG1_interact  54 lekrerrslerkiseleeel....keleeLraenqrLkdE 89 
                       ++   + +++ +++++++     ++++L+ enq+Lk+E
      CTQ29995.1 108 KLNNIDATWNQRTADMQKKVagsdSVINALKDENQKLKNE 147
                     3333344445556666555555557899999999999998 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.012
  PRKG1_interact   9 ekeenerLkreLeelekelselkseleklk 38 
                      k+en++Lk+eL  ++k+++ ++ +l+  +
      CTQ29995.1 137 LKDENQKLKNELVVAQKKVNAANLQLDDKQ 166
                     578899999999999999998888888754 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.5    0.0011      0.58      21      55 ..     123     157 ..     118     167 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0011
      GIT_CC  21 lKkalaaseakiqqLlkvNtslsdelrlLQskvqk 55 
                 + k++a s++ i++L+  N++l++el   Q+kv+ 
  CTQ29995.1 123 MQKKVAGSDSVINALKDENQKLKNELVVAQKKVNA 157
                 5699***************************9973 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.3     0.015       7.9      15      70 ..      91     146 ..      83     168 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.015
        FlxA  15 sasqiasLqkQiknlqkqLkelses.deltkeekkkqqqliqaQIqqlqaQIaqlqq 70 
                   +++  L++Q+k+l+++L+++ ++ ++ t++  +k+     + I++l+ + ++l++
  CTQ29995.1  91 LRTRVPDLENQVKTLTDKLNNIDATwNQRTAD-MQKKVAGSDSVINALKDENQKLKN 146
                 5667789******************8777776.444444444445555544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1739  (0.0969937); expected 358.6 (0.02)
Passed bias filter:                     1032  (0.0575604); expected 358.6 (0.02)
Passed Vit filter:                       198  (0.0110436); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 1489.83
//
Query:       CTQ29996.1  [L=413]
Description: fused tRNA nucleotidyl transferase; 2'3'-cyclic phosphodiesterase and 2'nucleotidase and phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-19   68.2   0.0    2.9e-18   66.5   0.0    1.9  1  PolyA_pol        Poly A polymerase head domain
    3.7e-15   55.4   0.1    8.9e-15   54.2   0.1    1.6  1  PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polym
    6.6e-12   45.7   1.6    2.7e-11   43.7   0.1    2.2  2  HD               HD domain


Domain annotation for each model (and alignments):
>> PolyA_pol  Poly A polymerase head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   4.8e-22   2.9e-18       2     126 .]       4     122 ..       3     122 .. 0.77

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 4.8e-22
                 EEETHHHHHHHTT---CEEEEEEC.S-HHHHHHHHHHHHT-EEEEETTTTCCCCEECCEEEEECCEECEEEEEE---SSHHH......HHHHHHCTSSB CS
   PolyA_pol   2 ylvGGaVRDlllgkepkDvDlatd.aapeelakllrkkvkeallsgeefqtiavlekkqllevatfRlekdesdarnpesekste...sleeDlkrRDf 96 
                 ylvGGaVRD+llg ++kD D ++  a+p++   +l   +++   +g++f +    ++++++ +a++  ++            +++   +le Dl rRD+
  CTQ29996.1   4 YLVGGAVRDALLGLPVKDRDWVVVgATPQQ---MLDAGYQQ---VGRDFPVFLHPQSREEYALARTERKSGAGYTGF---TCYAApdvTLEADLLRRDL 93 
                 9*******************7765266665...56666666...588998888888877776665554444333333...33333444*********** PP

                 GGGS-EEECTTTCEE-TTSHHHHHHTTEE- CS
   PolyA_pol  97 tiNalaynlnkgkvlDlfgGikdLkskvir 126
                 t+Nala + ++g+++D++gG++dL+++++r
  CTQ29996.1  94 TVNALAQD-ADGAIIDPYGGQNDLRQRLLR 122
                 *******9.99****************987 PP

>> PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polymerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.1   1.5e-18   8.9e-15       1      62 [.     149     212 ..     149     213 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 1.5e-18
  PolyA_pol_RNAbd   1 gFtIepeTaaairklap..lLkkispeRifeEllKlLlsghpeaglelLretgLlkylfPelaa 62 
                      gF+I++eT+a + ++ +  +L++++peR++ E++  L++ +p+  +++Lr++++lk+lfPe++a
       CTQ29996.1 149 GFRIAEETQALMAAMVEagELAHLTPERVWKETESALTTRNPQVFFQTLRDCQALKVLFPEIDA 212
                      8****************99*******************************************64 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2       0.1     6e+02       5      32 ..     135     162 ..     134     164 .. 0.72
   2 !   43.7   0.1   4.6e-15   2.7e-11       4     121 ..     231     328 ..     228     329 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHH.HHHHHHHHHHH CS
          HD   5 sleVaklarrlaedlge.eedrellllaa 32 
                  l+Va++a+r+a+ lg+  +++  +l+aa
  CTQ29996.1 135 VLRVARFAARYAH-LGFrIAEETQALMAA 162
                 699*********6.777655555566665 PP

  == domain 2  score: 43.7 bits;  conditional E-value: 4.6e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHTTCCHHHHHHHHHH CS
          HD   4 HsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgld..ledvaklirehheswegkkrprg 100
                 H+l++  +a++l  d++       +++a+L+HD+Gkg+++      ++++ ++++H   g++++++++ rl+++  + d+akl++e h+ + +      
  CTQ29996.1 231 HTLMTVTMAAMLSPDVD-------VRFATLCHDLGKGLTP------KALWPRHHGHGPAGVKLVEQLCARLRVPndIRDLAKLVAEYHDLIHTL----- 311
                 *****************.......**************99......4779999*******************99*****************965..... PP

                 HHCCTSCHHHHHHHHHHHHHH CS
          HD 101 laerqlslearivklaDrlaa 121
                     ++     +vkl D+++a
  CTQ29996.1 312 ----PILQPKTLVKLFDSIDA 328
                 ....99999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3172.79
//
Query:       CTQ29997.1  [L=273]
Description: undecaprenyl pyrophosphate phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-87  292.5  17.2    3.6e-87  292.3  17.2    1.0  1  BacA      Bacitracin resistance protein BacA
  ------ inclusion threshold ------
        6.3    6.6  12.5        2.1    8.1   2.0    3.5  3  FeoB_C    Ferrous iron transport protein B C terminus


Domain annotation for each model (and alignments):
>> BacA  Bacitracin resistance protein BacA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.3  17.2     4e-91   3.6e-87       1     255 [.      10     266 ..      10     267 .. 0.93

  Alignments for each domain:
  == domain 1  score: 292.3 bits;  conditional E-value: 4e-91
        BacA   1 aiilGivqGltefLPvSSsGhlilveellglekedlllfdvvihlGtllAvlvlfrkdilrllkgllkslkkkkkekeelrlllliivatipaailgll 99 
                 a+ilG+v+GltefLPvSS+Gh+i+v +llg+e +++++f+vvi+lG++lAv+v+f+++++ l+   + +   ++ + + +  l++i++++ipa+++gl+
  CTQ29997.1  10 AAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDTANTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGKPPAHEGQGSGRLSLIHILLGMIPAVVMGLI 108
                 689****************************9666899************************99999988887778888888889************** PP

        BacA 100 lkdlieellrsplvvaialivtglllllaeklrkk..kkksledltlkdalliGlaQalAllPGvSRSGaTivaglllglsreaaaefSFllaiPailg 196
                 ++d+i++l+ +p+ v++aliv+g+ll++ae l+ k  ++  ++d+t+++a++iG++Q+lAl+PG+SRSGaTi++g+l+g+sr aa efSFlla+P+++g
  CTQ29997.1 109 FHDTIKSLF-NPVNVMYALIVGGVLLIAAEVLKPKqpRAVGIDDMTYRQAFVIGCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMG 206
                 *****9977.99******************5555522556668******************************************************** PP

        BacA 197 agllkllksaealtaselll.lvgfvvafvvallaikfllkllkkkklkvFaiYrivlGl 255
                 a++l+++ks + l++ ++ + +vgfv+af+val+aik++l+l+k+ ++ +FaiYr+++++
  CTQ29997.1 207 ATVLDVYKSIGFLNMGDVPMfAVGFVMAFIVALIAIKTFLQLIKRISFIPFAIYRFIVAA 266
                 *********99999999999999**********************************986 PP

>> FeoB_C  Ferrous iron transport protein B C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1    0.0035        32       5      25 ..      95     114 ..      92     119 .. 0.86
   2 ?   -2.4   0.5      0.45     4e+03       4      15 ..     123     134 ..     120     140 .. 0.60
   3 ?    8.1   2.0   0.00024       2.1       4      23 ..     226     244 ..     224     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0035
      FeoB_C   5 Yllgilvallvalllkkttlk 25 
                 +llg++ a++++l+++ t +k
  CTQ29997.1  95 ILLGMIPAVVMGLIFHDT-IK 114
                 699************985.65 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.45
      FeoB_C   4 lYllgilvallv 15 
                 +Y+l +  +ll+
  CTQ29997.1 123 MYALIVGGVLLI 134
                 566655555544 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00024
      FeoB_C   4 lYllgilvallvalllkktt 23 
                 ++++g+++a++val++ k t
  CTQ29997.1 226 MFAVGFVMAFIVALIAIK-T 244
                 899************987.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2099.70
//
Query:       CTQ29998.1  [L=127]
Description: bifunctioal dihydroneopterin aldolase; dihydroneopterin triphosphate 2'-epimerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-32  110.7   0.4      6e-32  110.5   0.4    1.0  1  FolB      Dihydroneopterin aldolase


Domain annotation for each model (and alignments):
>> FolB  Dihydroneopterin aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.4   3.3e-36     6e-32       1     111 []       4     113 ..       4     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 3.3e-36
                 EEEEEEEEEEEESSSHHHHHC-EEEEEEEEEEE-CHHHHHHTTGGGSS-HHHHHHHHHHHHHSSEES-HHHHHHHHHHHHHCHSTESEEEEEEEETTSS CS
        FolB   1 ieikglrvpaiiGvnpeErelkQrvvvdleleldlskaaesddledtvdYaelakavkelvesssfkllEalaeriaealleefpvekvevrveKpnap 99 
                 ++i++l+v ++iGv+++E++++Q++v+d+e+++d +kaa+sdd++d ++Ya+++++v ++ve+ +f l+E++ae++a+ lle+f+  +v+++v+Kp a+
  CTQ29998.1   4 VFIEQLSVITTIGVYDWEQTIEQKLVFDIEIAWDNRKAAASDDVSDCLSYADISERVIAHVEGGKFALVERVAEEVADLLLETFQSPWVRIKVSKPGAV 102
                 69************************************************************99**********************************7 PP

                 STC.ESEEEEEEE CS
        FolB 100 iga.adavgveit 111
                   a a++vgv i+
  CTQ29998.1 103 --ArAANVGVIIE 113
                 ..449****9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1051.15
//
Query:       CTQ29999.1  [L=205]
Description: 1-acyl glycerol-3-phosphate synthetase component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-49  166.8   9.2    4.6e-49  166.6   9.2    1.0  1  G3P_acyltransf  Glycerol-3-phosphate acyltransferase


Domain annotation for each model (and alignments):
>> G3P_acyltransf  Glycerol-3-phosphate acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.6   9.2   2.6e-53   4.6e-49       1     163 []      11     184 ..      11     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 166.6 bits;  conditional E-value: 2.6e-53
                     HHHHHHT--HHHHHHHH.TT--GGGSTTS--SHHHHHHHH-HHHHHHHHHHHHHHHH.HHHHHHHH........HHHHHHHHHHHS-GGCTT--- CS
  G3P_acyltransf   1 laYllGsipfayligkllkgiDirelgsgNaGatNvlrvlGkkagilvlllDllKgllavllalll........laglaavlGHifPvflkfkGG 87 
                     laYl+Gsi++a+l+++l    D+r++gsgN+GatNvlr++Gk+a+++vl++D+lKg+l+v+ a +l        l+++aa++GHi+Pvf++f+GG
      CTQ29999.1  11 LAYLCGSISSAILVCRLAGLPDPRDSGSGNPGATNVLRIGGKGAAVAVLIFDVLKGMLPVWGAWALgltpfwlgLVAIAACVGHIWPVFFHFRGG 105
                     69**************96666***************************************87776676777778899****************** PP

                     -SHHHHHHHHHHHH...HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH.HH.....HH..HHHHHHHHHHHTHHHHHHH CS
  G3P_acyltransf  88 KGvatalGvllaldllllllallvfllvllltryvslaslvaalllpllllll...llllllllallvilrhrenikrl 163
                     KGvata+G+++ + l l+ ++++++ll++ll+ y+sl+++v+al++p++++++   +++ + +l++l++lrh++ni+rl
      CTQ29999.1 106 KGVATAFGAIAPIGLDLTGVMAGTWLLTILLSGYSSLGAIVSALIAPFYVWWFkpqYTFPVSMLSCLILLRHHDNIQRL 184
                     **********9996546666678************************988888999889999****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1734.54
//
Query:       CTQ30000.1  [L=9]
Description: hypothetical protein CH1034_300108 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (9 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                        20  (0.00111551); expected 358.6 (0.02)
Passed bias filter:                       15  (0.000836633); expected 358.6 (0.02)
Passed Vit filter:                         1  (5.57756e-05); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.20s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 82.86
//
Query:       CTQ30001.1  [L=274]
Description: Urease accessory protein UreD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-45  153.8   0.0    7.6e-45  153.4   0.0    1.1  1  UreD      UreD urease accessory protein


Domain annotation for each model (and alignments):
>> UreD  UreD urease accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.4   0.0   4.3e-49   7.6e-45       1     208 [.      54     243 ..      54     248 .. 0.92

  Alignments for each domain:
  == domain 1  score: 153.4 bits;  conditional E-value: 4.3e-49
                 EEEEE-SS-B-TT-EEEEEEEE-TT-EEEEEE-S-EEE---T.TS-EEEEEEEEE-TT-EEEE----EEE-TT-EEEEEEEEEE-TT-EEEEEEEEE-S CS
        UreD   1 vyllsygGGlvgGDrldldvevgpgarlllttqgatkiyksraekvsrqtlrvrvaagatLellPdpvipfagsryeqtqrfeLapgasllllDwvtsG 99 
                 +yll+++GG+vgGD+l+++ ++ pg++ l+t +ga k+y+s  + ++  ++++++a++atLe+lP+  i+f g++ +  ++f+L ++++ll +D +++G
  CTQ30001.1  54 LYLLHPPGGIVGGDELTISAHLAPGCHTLITMPGASKFYRSS-GAQALVRQQLTLAPQATLEWLPQDAIFFPGANARLFTTFHLCASSRLLAWDLLCLG 151
                 69**************************************94.46799*************************************************** PP

                 -CCCT--S-SSEEEEEEEE.EETTEEEEEEEEEE-T-TTST....TTTTT--EEEEEEEES....--HHHHHHTEEE..............EEEE-S-E CS
        UreD 100 rtargErwafdryrsrnevwvgdgrlllrDrlllepedesatslaerlagygvvgtlilvgpefeellealreefaalprigaeeaeevlwsasrlrgl 198
                 r+  gE+++ +++++r+evwv d+++ll++rl l++++       +++a+ + vgtl+++  ++++ll+ +r+ +         ++ +++++as ++ l
  CTQ30001.1 152 RPVIGETFSHGTLSNRLEVWV-DDEPLLVERLQLQEGE--L----SSVAERPWVGTLLCYP-ATDALLDGVRDAL---------APLGLYAGASLTDRL 233
                 *********************.9***********9523..3....678999*********6.778********33.........3458999*****889 PP

                 .EEEEEESSH CS
        UreD 199 vvvrvlakda 208
                 + vr+l++d+
  CTQ30001.1 234 LTVRFLSDDN 243
                 9*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       192  (0.0107089); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 2133.68
//
Query:       CTQ30002.1  [L=100]
Description: urease gamma subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-47  158.0   0.1    6.7e-47  157.8   0.1    1.0  1  Urease_gamma  Urease, gamma subunit


Domain annotation for each model (and alignments):
>> Urease_gamma  Urease, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.8   0.1   3.8e-51   6.7e-47       1      99 []       1      99 [.       1      99 [. 1.00

  Alignments for each domain:
  == domain 1  score: 157.8 bits;  conditional E-value: 3.8e-51
                  ----HHHHHHHHHHHHHHHHHHHHHTT--B-HHHHHHHHHHHHHHHHHCTS-HHHHHHHHCCSS-CCCB-TTCHHH-SEEEEEEEETTEEEEEEEES-S CS
  Urease_gamma  1 mkLtpreldkLllfaaaelAqkrlarGlkLnhpEavaliasevlelardgksvaelmelgkklLtredvldgvaelleevqveatfpdgtkLvtvhdpi 99
                  m+Ltpre+dkLllf+aa +A++rlarGlkLn+pE+vali++ ++e+ardgksva lme+g+++Ltre+v++gv+e+++++qveatfpdg+kLvtvh+pi
    CTQ30002.1  1 MELTPREKDKLLLFTAALVAERRLARGLKLNYPESVALISAFIMEGARDGKSVASLMEEGRHVLTREQVMEGVPEMIPDIQVEATFPDGSKLVTVHNPI 99
                  9*************************************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 835.82
//
Query:       CTQ30003.1  [L=106]
Description: urease beta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-45  153.0   0.1    1.9e-45  152.9   0.1    1.0  1  Urease_beta  Urease beta subunit


Domain annotation for each model (and alignments):
>> Urease_beta  Urease beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.1     1e-49   1.9e-45       1      97 [.       3      99 ..       3     100 .. 0.99

  Alignments for each domain:
  == domain 1  score: 152.9 bits;  conditional E-value: 1e-49
                 TT-EE-SSSEEETTTT---EEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE-STT-EE-STTSS--E CS
  Urease_beta  1 pgeiiteegeielnagretiklkvantgdrpiqvgshyhflevnkaLefdRekalGlrldipagtavrfepgeekevelvelaGerkvyGlnglvng 97
                 pge+++++g+i+ln+gr t+++ v+n+gdrpiqvgshyhf+evn+aL+fdR++a G+rl+ipagtavrfepg+++evelv++aG+r v G++g+v+g
   CTQ30003.1  3 PGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMG 99
                 8********************************************************************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      193  (0.0107647); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 825.34
//
Query:       CTQ30004.1  [L=567]
Description: urease alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-84  284.2   1.3      2e-84  283.9   1.3    1.1  1  Amidohydro_1     Amidohydrolase family
    4.1e-56  188.5   1.4    7.9e-56  187.6   1.4    1.5  1  Urease_alpha     Urease alpha-subunit, N-terminal domain
    4.8e-15   56.0   0.9    6.6e-08   32.4   0.0    2.7  2  Amidohydro_3     Amidohydrolase family
  ------ inclusion threshold ------
       0.04   13.9   0.1        1.1    9.3   0.1    3.1  3  Molybdopterin_N  Molybdopterin oxidoreductase N-terminal doma


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.9   1.3   4.5e-88     2e-84       1     339 [.     125     453 ..     125     483 .. 0.98

  Alignments for each domain:
  == domain 1  score: 283.9 bits;  conditional E-value: 4.5e-88
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH....HHHHHHHHHHTSSSEEEEEEESSEGGSGCCCS CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst....giealleaaeelplglrilggkvsldrgsaet 93 
                   iv++G+ID+H+H               ++p++a+eal sg++t++++Gt+++a+++att+t    +i+++l+aa++lp+++++lg+      g+ ++
    CTQ30004.1 125 IVTAGGIDTHIHW--------------ICPQQAEEALVSGVTTMVGGGTGPAAGTHATTCTpgpwYISRMLQAADSLPVNIGLLGK------GNVSQ 201
                   79***********..............***********************************************************......***** PP

                   HHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE..TSSCHHHHHHHHHHTTTEEEETTTTSTCCHHTTTHC CS
  Amidohydro_1  94 skasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHa..letkgevedaeaafgetiehgthlevaeslglldei 188
                   + a+re++ ag+             ++l+ he+++++++++++al +a+++d++va H   l+++g+ved++aa+g++++h++h+e+a++++++d+i
    CTQ30004.1 202 PDALREQVTAGV-------------IGLKIHEDWGATPAAIDCALTVADEMDVQVALHSdtLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDII 285
                   ***********9.............************************************************************************ PP

                   CEEEHCTCEEE...HH...HHHHHHHHHHHHCEE.........HHHHHHHHSEHHHHHHHHHHHH.TSCEEEEEECTTSSCCGGHHHH...HHHHHH CS
  Amidohydro_1 189 klilahgvhlt...pt...eaellkerlkeagva.........hcpfsnsilrsgrealrkalde.GvkvglgtDgaasgnslnllee...lrlalk 266
                   +++++ +++++   pt   ++++++e+l++ +v+         +++f++s++r +++a++++l++ G+++ +++D++a+g++++++ +   +++ +k
    CTQ30004.1 286 TACAHPNILPSstnPTlpyTLNTIDEHLDMLMVChhldpdiaeDVAFAESRIRRETIAAEDVLHDlGAFSLTSSDSQAMGRVGEVILRtwqVAHRMK 382
                   ***********76655999*******************************************************************999******** PP

                   HHHHCCTT..TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECCCTCGGGTTTCTSEEEEEEEE CS
  Amidohydro_1 267 lqrgllye..deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdldilaafvglkkdgnvkkviv 339
                   +qrg l+e  ++++++++k++++++Tin+A  +g++++vGsievGk ADlvv+     +af+g+k++  +k++++
    CTQ30004.1 383 VQRGALAEetGDNDNFRVKRYIAKYTINPALTHGIAHEVGSIEVGKLADLVVW----SPAFFGVKPATVIKGGMI 453
                   **********99*****************************************....*********999999998 PP

>> Urease_alpha  Urease alpha-subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.6   1.4   1.8e-59   7.9e-56       2     121 .]       3     119 ..       2     119 .. 0.98

  Alignments for each domain:
  == domain 1  score: 187.6 bits;  conditional E-value: 1.8e-59
  Urease_alpha   2 klsreeyaelyGptvgDrvrLadtellievekDltvyGeevkfGggkviRdgmgqssaakeeealDlvitnavilDatgivkadigikdgrivaiGk 98 
                   ++sr++ya+++GptvgD+vrLadtel+ieve+Dlt+yGeevkfGggkviRdgmgq ++ +++ ++Dlv+tna+i+D++givkadig+kdgri+aiGk
    CTQ30004.1   3 NISRQAYADMFGPTVGDKVRLADTELWIEVEDDLTTYGEEVKFGGGKVIRDGMGQGQMLAAD-CVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGK 98 
                   69******************************************************999887.********************************** PP

  Urease_alpha  99 agnpdvmdgvdeelvigastevi 121
                   agnpd++++v+  + iga+tevi
    CTQ30004.1  99 AGNPDIQPNVT--IPIGAATEVI 119
                   ***********..********98 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.2   3.6e-08   0.00016       1      53 [.     117     160 ..     117     187 .. 0.88
   2 !   32.4   0.0   1.5e-11   6.6e-08     399     465 ..     387     447 ..     369     455 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.6e-08
  Amidohydro_3   1 eviDakGrlvlPGFvDsHtHlagggvnlrllrlpdarvtslegvltavrdqag 53 
                   evi a+G++v++G++D H+H         ++ +++a+   + gv+t+v++  g
    CTQ30004.1 117 EVIAAEGKIVTAGGIDTHIH---------WICPQQAEEALVSGVTTMVGGGTG 160
                   79******************.........788888899999999999988665 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 1.5e-11
  Amidohydro_3 399 g..evlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvldadpldvdppelaearvrlt 465
                   +  e ++++  + +   +a yT +pA + g  ++ G++evG+ ADlvv++ + + v+p++        +
    CTQ30004.1 387 AlaEETGDNDNFRVKRYIAKYTINPALTHGIAHEVGSIEVGKLADLVVWSPAFFGVKPAT--------V 447
                   14567788889999999****************************************984........3 PP

>> Molybdopterin_N  Molybdopterin oxidoreductase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1   0.00026       1.1       4      21 ..      78      97 ..      78     111 .. 0.79
   2 ?   -2.4   0.0       1.2   5.2e+03      24      36 ..     521     534 ..     514     536 .. 0.75
   3 ?    0.1   0.0      0.19   8.6e+02       8      23 ..     541     555 ..     540     556 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00026
  Molybdopterin_N  4 HWGafraev..kdGkivgvr 21
                     HWG ++a++  kdG+i ++ 
       CTQ30004.1 78 HWGIVKADIgvKDGRIFAIG 97
                     *******97769****9986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
  Molybdopterin_N  24 eg.DpdPspllegv 36 
                      ++ D  +++l+ ++
       CTQ30004.1 521 QKaDMVHNSLQPNI 534
                      55599999999887 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.19
  Molybdopterin_N   8 fraevkdGkivgvrPf 23 
                      ++++v dG ++ ++P+
       CTQ30004.1 541 YEVRV-DGELITSEPA 555
                      67888.999*****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4128.82
//
Query:       CTQ30005.1  [L=158]
Description: Urease accessory protein UreE [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-30  104.2   8.2    5.2e-30  103.8   8.2    1.2  1  UreE_C    UreE urease accessory protein, C-terminal domain
    2.8e-13   49.3   0.2    4.5e-13   48.6   0.2    1.3  1  UreE_N    UreE urease accessory protein, N-terminal domain


Domain annotation for each model (and alignments):
>> UreE_C  UreE urease accessory protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   8.2   5.8e-34   5.2e-30       1      87 []      72     158 .]      72     158 .] 0.89

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 5.8e-34
      UreE_C   1 epvleitaedalelaraayhLGNrHvpleikedelrieddhvledmlrtlgaeveevlapfepeggAyeaakghghhehehghehsH 87 
                 e+v +++++d++ la+a+yhLGNrHvpl+i ++elr+++dhvl+dmlr+ g++v+  + pfepe+gAy+++++++hh h+ +h+hsH
  CTQ30005.1  72 ERVSVVRCDDPFMLAKACYHLGNRHVPLQIMPGELRYHHDHVLDDMLRQFGLTVTFGQLPFEPEAGAYASESHGHHHAHHDHHAHSH 158
                 689*****************************************************************5444444445555588888 PP

>> UreE_N  UreE urease accessory protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.2     5e-17   4.5e-13       8      60 ..      11      62 ..       5      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 5e-17
                GGGSEEEEEEE-GGGTT-SEEEEE-TTS-EEEEE-SS-T---TTBEEEEETTE CS
      UreE_N  8 adaapadtvtLtweerqkrRlrvttdsGrevglrLprgtvLrdGDiLvaddgr 60
                + aa+   vtL+ + r k+R +vt+ +Gre gl Lprg  Lr+GD+L  ++g+
  CTQ30005.1 11 PSAAT-ASVTLPIDVRVKSRVKVTLNDGREAGLLLPRGLLLRGGDVLSNEEGT 62
                44444.59******************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1204.78
//
Query:       CTQ30006.1  [L=236]
Description: Urease accessory protein UreF [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-32  113.4   2.7    1.1e-32  113.4   2.7    1.7  2  UreF      UreF


Domain annotation for each model (and alignments):
>> UreF  UreF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   2.7   5.9e-37   1.1e-32       1     131 [.      50     193 ..      50     194 .. 0.94
   2 ?   -2.3   0.0      0.34   6.1e+03      29      59 ..     203     232 ..     198     233 .. 0.72

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 5.9e-37
                 S-SHHHHHHHHHHHHTTHHHHTHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHH-..............-HHHHHHHH CS
        UreF   1 vtdeaslaawledqLllglarldlavlarayraaragdaaalrelddwllatretaelrlaseqmGrsllrllrkl........t.....hypvafgla 86 
                 v d a++++w + q+ +g+ ++dl+++ar+yra+++gd+aa +++ + lla+ret+elr+++++ G +++rll+++        +     ++   ++++
  CTQ30006.1  50 VPDVAAFERWQRRQMTEGFFTVDLPLFARLYRACEQGDIAAAQRWTAYLLACRETRELREEERNRGAAFARLLSDWqpdcpppwRslcqqSQLAGMAWL 148
                 67899***********************************************************************777666550566678******** PP

                 HHHHT--HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHT CS
        UreF  87 aaalgipleeallaylfswaenlvsAavklvplGqtagqrilarl 131
                   ++ i l e++l + +sw+e+ v+A+vklvp+Gq+a+q++++rl
  CTQ30006.1 149 GVRWRIALPEMALSLGYSWIESAVMAGVKLVPFGQQAAQQLILRL 193
                 ******************************************998 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.34
                 HHHHHHHTT-HHHHHHHHHHHHHH--SHHHH CS
        UreF  29 rayraaragdaaalrelddwllatretaelr 59 
                 ra+ aa +gd+ +   l + ++a  et+  r
  CTQ30006.1 203 RAL-AAPDGDIGSATPLAAIASARHETQYSR 232
                 555.445788888888899999988887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1845.62
//
Query:       CTQ30007.1  [L=205]
Description: urease accessory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-40  137.9   0.0    3.1e-40  137.6   0.0    1.0  1  cobW        CobW/HypB/UreG, nucleotide-binding domain
    0.00017   20.7   0.0       0.22   10.5   0.0    2.0  2  MeaB        Methylmalonyl Co-A mutase-associated GTPase MeaB
     0.0074   16.4   0.0      0.016   15.3   0.0    1.6  1  MMR_HSR1    50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.01   15.1   0.0      0.015   14.5   0.0    1.3  1  Zeta_toxin  Zeta toxin
      0.012   16.0   0.0      0.016   15.6   0.0    1.3  1  AAA_16      AAA ATPase domain
      0.019   14.9   0.0      0.035   14.1   0.0    1.4  1  AAA_5       AAA domain (dynein-related subfamily)
      0.031   14.8   0.0       0.11   12.9   0.0    1.8  2  AAA_23      AAA domain
      0.034   13.7   0.1        1.2    8.7   0.0    2.6  2  GTP_EFTU    Elongation factor Tu GTP binding domain
      0.058   12.6   0.0      0.058   12.6   0.0    1.1  1  KAP_NTPase  KAP family P-loop domain
      0.064   13.8   0.0       0.11   13.0   0.0    1.5  1  AAA_18      AAA domain
      0.085   13.4   0.0       0.12   12.9   0.0    1.4  1  ABC_tran    ABC transporter
      0.097   12.6   0.1       0.54   10.2   0.1    2.0  1  MobB        Molybdopterin guanine dinucleotide synthesis prot
        0.1   13.0   0.0       0.18   12.2   0.0    1.7  2  AAA         ATPase family associated with various cellular ac
       0.15   11.8   0.0       0.31   10.8   0.0    1.6  2  AAA_21      AAA domain, putative AbiEii toxin, Type IV TA sys
       0.16   12.4   0.0       0.35   11.3   0.0    1.5  1  ORF_12_N    ORF 12 gene product N-terminal


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.0   2.6e-43   3.1e-40       3     174 ..      10     178 ..       8     181 .. 0.95

  Alignments for each domain:
  == domain 1  score: 137.6 bits;  conditional E-value: 2.6e-43
                 EEEEESTTCCHHHHHHHHH.CT--SS-EEEEESS-SSCHCCCCCCHCCCT.....EEEETTTTECCH.CTT-HHHHHHHHHHHH...TT-SEEEEEECT CS
        cobW   3 tvltGflGsGKTtLlnhll.enraglklavivNefgevsiDaellretgve....ivelenGciCct.lredllkelealeere...erldviliEttG 92 
                 ++++G++GsGKT+Ll++l+ + r+  +lav++N+++ +++D+++l+e+g+     iv +e+G++++t +red++++l+a+e+++   ++ld+i++E++G
  CTQ30007.1  10 VGVGGPVGSGKTALLEALCkAMRDTWQLAVVTNDIY-TKEDQRILTEAGALaperIVGVETGGCPHTaIREDASMNLAAVEALSekfGNLDLIFVESGG 107
                 679****************99999************.***********8888899***********************99999988899********** PP

                 .TTTHHHHHTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC...HHHHHHHHHHHHTTS- CS
        cobW  93 .laePapvafteeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldee.allekleerlrqlnpeak 174
                  +++++++         +  +d +++v+D+    ae+eki++k++ +++++d+lv+nKtDl++++ a+le++++++++++ + +
  CTQ30007.1 108 dNLSATFS---------PELADLTIYVIDV----AEGEKIPRKGGPGITKSDFLVINKTDLAPYVgASLEVMASDTQRMRGDRP 178
                 ******99.........99***********....9*******************************************998766 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00074      0.89      30      63 ..       8      40 ..       2      53 .. 0.85
   2 !   10.5   0.0   0.00018      0.22     111     208 ..      86     184 ..      66     200 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00074
                EEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEE CS
        MeaB 30 qvvGltGvPGaGkstlvealglelrrrGkrvavl 63
                 +vG+ G  G+Gk  l+eal   +r+   + av+
  CTQ30007.1  8 LRVGVGGPVGSGKTALLEALCKAMRDT-WQLAVV 40
                69******************9998875.455655 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00018
                 HHHHHHHHHTT.-SEEEEEEESSTTHHHHHHTT-SEEEEEEESSTTTTTTT--CCCHHH-SEEEEE---HHHHHHHHHHHHHHHHHCSTTBTTB--EEE CS
        MeaB 111 revvllleaaG.fDvvlietvGvGqsevdvaevvdtfvvlllpeaGDelqgikkGileiaDiivvnkaDkkeaekaarelraaleleeekekeWrpkvl 208
                  +v +l e +G  D + +e  G   s +   e++d+++ ++  + G+++       +  +D +v+nk+D++    a+ e++a  +   + ++ W+   l
  CTQ30007.1  86 AAVEALSEKFGnLDLIFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFLVINKTDLAPYVGASLEVMASDTQRMRGDRPWTFTNL 184
                 4555677888856***********************************976554456779*********877777766666666666666777765544 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.4e-05     0.016       1      86 [.       9     129 ..       9     155 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.4e-05
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE........ETTEEEEEEECGGC............SSHHHHHHH.............. CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk........lkgkeielvDtpGl............iegaseekg.............. 65 
                 +v++ G   +GK+ L+ al+++   + + + +T di +++ +        l  ++i+ v t G             +                      
  CTQ30007.1   9 RVGVGGPVGSGKTALLEALCKAMRDTWQLAVVTNDIYTKEDQrilteagaLAPERIVGVETGGCphtairedasmnL-------Aavealsekfgnldl 100
                 68999****************98888899999999876653334444554445679999999973333333333330.......133333333334444 PP

                 .........HHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  66 .........lgkaflaleeadlillvvdas 86 
                          l+ +f   e adl ++v+d++
  CTQ30007.1 101 ifvesggdnLSATFSP-ELADLTIYVIDVA 129
                 4444444336666664.3378888888866 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.3e-05     0.015      14      53 ..       5      44 ..       1      49 [. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
  Zeta_toxin 14 erPklillgGqpGAGKselaellkdelerqgnvvrldpDd 53
                ++P  + +gG  G+GK++l+e+l ++++ + +  ++  D 
  CTQ30007.1  5 KHPLRVGVGGPVGSGKTALLEALCKAMRDTWQLAVVTNDI 44
                899999*********************9887777777775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.0   1.3e-05     0.016      27      63 ..      10      51 ..       5     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-05
      AAA_16 27 vllsGesGvGKsslvrellralekd...ggif...lrgkcdql 63
                v + G+ G+GK++l+++l +a++++    + +   +++k dq 
  CTQ30007.1 10 VGVGGPVGSGKTALLEALCKAMRDTwqlAV-VtndIYTKEDQR 51
                5589***************99998853322.235566666655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.9e-05     0.035       6      39 ..      14      49 ..      10      54 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.9e-05
                --SSSSHHHHHHHGGGGB..S--EEEEE--TT--HH CS
       AAA_5  6 GppGtgKselaerlaaal..nreveyvqltrdttee 39
                Gp G+gK+ l e l++a+  ++++ +v +  +t+e+
  CTQ30007.1 14 GPVGSGKTALLEALCKAMrdTWQLAVVTNDIYTKED 49
                9*****************666666666666666665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.6e-05      0.11      25      42 ..      13      30 ..      10      55 .. 0.90
   2 ?   -0.9   0.0       1.6   1.9e+03      50     103 ..     134     186 ..     128     198 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.6e-05
      AAA_23 25 tGpNGaGKTTildAikla 42
                 Gp G+GKT++l+A++ a
  CTQ30007.1 13 GGPVGSGKTALLEALCKA 30
                799************966 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.6
      AAA_23  50 lsrksgrgfeksdveiesegkvkayveltfenkdgrytrsiererelskkkgkt 103
                  +rk g g+ ksd+ + ++++ ++yv  ++e    + t++++ +r+++ ++ k+
  CTQ30007.1 134 IPRKGGPGITKSDFLVINKTDLAPYVGASLEVMASD-TQRMRGDRPWTFTNLKQ 186
                 455667789999999999989999865555543332.24565566666555554 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00099       1.2       5      32 ..       9      36 ..       5      59 .. 0.73
   2 ?    2.0   0.0      0.11   1.3e+02     126     143 ..     147     167 ..     111     177 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00099
                EEEEEESTTSSHHHHHHHHHHHTTSSCH CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLlyktgaisk 32
                 +g+ g v +GKt L+++L ++  ++ +
  CTQ30007.1  9 RVGVGGPVGSGKTALLEALCKAMRDTWQ 36
                78999**************988776655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.11
                 EEEEESCGST...HHHHHHHH CS
    GTP_EFTU 126 ivfiNKmDrl...kaelkeiv 143
                 +++iNK D +   +a+l+ ++
  CTQ30007.1 147 FLVINKTDLApyvGASLEVMA 167
                 567777777666656555555 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.9e-05     0.058      16      48 ..       3      35 ..       1     164 [. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-05
  KAP_NTPase 16 tlatpivvgLygkWGsGKssllnkledelkefa 48
                +++ p+ vg+ g+ GsGK++ll+ l +++++  
  CTQ30007.1  3 SYKHPLRVGVGGPVGSGKTALLEALCKAMRDTW 35
                678999***********************9984 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.2e-05      0.11       1      35 [.      10      48 ..      10     110 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.2e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrl.gf...gvnlrdvaken 35
                +++ G+ G+GKt l ++L k +       v+ +d+ +++
  CTQ30007.1 10 VGVGGPVGSGKTALLEALCKAMrDTwqlAVVTNDIYTKE 48
                689***************888622244444444444444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0    0.0001      0.12      13      38 ..       9      34 ..       3     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.0001
                EEEEEESTTSSHHHHHHHHTTSS--S CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkpt 38
                +v++ G+ G+GK+ Ll++l++ +++t
  CTQ30007.1  9 RVGVGGPVGSGKTALLEALCKAMRDT 34
                68999***************998865 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00045      0.54       3      97 ..      11     104 ..       9     107 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00045
        MobB   3 givgksgsGKTtLleklipelkarglrvgtiKhahhgfdvdkpgkDsyrhrkAGAke....vlvaske..rlalikeleeaelsleellarlsevDlvl 95 
                 g+ g  gsGKT+Lle l +++++  ++++++  +        +  D   +++AGA +    v v++    ++a+ ++ + +  ++e l +++ ++Dl++
  CTQ30007.1  11 GVGGPVGSGKTALLEALCKAMRD-TWQLAVVTNDIY------TKEDQRILTEAGALAperiVGVETGGcpHTAIREDASMNLAAVEALSEKFGNLDLIF 102
                 5667889***********99875.577777755432......233555666666632211133333221122222222333344455555555577777 PP

        MobB  96 vE 97 
                 vE
  CTQ30007.1 103 VE 104
                 66 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00015      0.18       4      23 ..      13      32 ..      10     127 .. 0.84
   2 ?   -2.6   0.0       5.9   7.1e+03      23      43 ..     144     163 ..     134     174 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
                ESSTTSSHHHHHHHHHHHHT CS
         AAA  4 yGppGtGKTllakavakelg 23
                 Gp G GKT+l +a++k + 
  CTQ30007.1 13 GGPVGSGKTALLEALCKAMR 32
                59***************985 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.9
                 THEEEEEETTTCSSSSTTHHH CS
         AAA  23 gvefleisgsellskyvgese 43 
                 +++fl i+ ++l   yvg+s 
  CTQ30007.1 144 KSDFLVINKTDLA-PYVGASL 163
                 5667778888887.7777765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00026      0.31       5      19 ..      13      27 ..      10      70 .. 0.89
   2 ?   -1.2   0.0       1.2   1.5e+03     220     247 ..     167     196 ..      74     197 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
      AAA_21  5 iGpNgsGKSnLLdal 19
                 Gp gsGK+ LL+al
  CTQ30007.1 13 GGPVGSGKTALLEAL 27
                59************9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
      AAA_21 220 gvvflengdgqelparel..SdGtkrllal 247
                  + +  + +++++++++l  +dG   ++a+
  CTQ30007.1 167 ASDTQRMRGDRPWTFTNLkqGDGLSTIIAF 196
                 444555667777777777777777777666 PP

>> ORF_12_N  ORF 12 gene product N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00029      0.35      43      68 ..     164     189 ..     153     201 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00029
    ORF_12_N  43 eelaevlaqlraagPftvtsyegves 68 
                 e +a  ++ +r+++P+t+t++++++ 
  CTQ30007.1 164 EVMASDTQRMRGDRPWTFTNLKQGDG 189
                 66888999*************99664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1444.97
//
Query:       CTQ30008.1  [L=535]
Description: conserved hypothetical protein; putative membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-09   37.0  43.7    6.1e-09   35.2  43.7    1.8  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
       0.17   12.2   0.0       0.34   11.2   0.0    1.5  1  La_HTH_kDCL     La HTH in kinetoplastid DICER domain
       0.25   11.3   1.2       0.43   10.5   1.2    1.3  1  Zn_ribbon_SprT  SprT-like zinc ribbon domain


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2  43.7     1e-12   6.1e-09       7     412 ..      36     438 ..      31     472 .. 0.78

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1e-12
  Transp_cyt_pur   7 RtwktlnlfsiWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsR.asfGirgsllplllrvviaiv 99 
                     R w++  ++++ lg +  ++ ++iga+  +a   ++ +++ +i+v++l+++   ++l++  a+y + + ++ R a fG +gs++ +++ +    +
      CTQ30008.1  36 RRWGPGVVAVTALGGIAYLADFSIGASIgMAW--GTSNAIYSILVAALVIFLTGIPLAITAARYNIDLDLITRsAGFGYFGSVITSIIFAGFTFI 128
                     66777777777777777888888888773444..44578999******************************9557******************* PP

  Transp_cyt_pur 100 wfgvqawiGsealllmlgkifgkwleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaeg..Gpvld 192
                     +f++   i ++ ll                 +g+++  +++ +i+ +  l+ v+ g++++++++v++ +l  v+ +++ +w++vk      + l+
      CTQ30008.1 129 FFALEGSIMAQGLL-----------------VGLGIPLWMGYLIATLMVLPLVVYGMKALTRLQVWTTPLWLVLMMVPVVWLIVKDPQlvDGFLH 206
                     **955444333332.................3355669999****************************************99987665644444 PP

  Transp_cyt_pur 193 kavklgkselflsavagvlagfatlilnap...DFtryaktkkssvk.....iqlvavpllftlllligilvaaaakaa.yganaws....pldi 274
                      a+k ++s + ++a+++ +++  +li+ ++   D+ r++++k+++ +      +++a p+ ++l ++  i++a ++ ++   ++a      ++++
      CTQ30008.1 207 FAGKNSASTVDITAIMLGAGVCLSLIMQIGeqiDYLRFMPPKTAENRkswwlAVFSAGPGWVVLGAIKQIIGAFLGFYLlTRFPAVHntepVQQF 301
                     44444444478****************998888*******99876541111246677789999999999****9999987777776611114456 PP

  Transp_cyt_pur 275 lakfdet....agvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllsssskl.ftaflsllavflspvag 364
                     +  fd++    +++ l+++lv ++q+ +n+++++  ++  ++a +  +  +  g +i  v+ l+i+++ l++   ++     l++++ f  ++++
      CTQ30008.1 302 VSVFDNLvpgwLALTLAVVLVVISQIKINVTNAYSGSLAWTSAWTR-TTKRYPGRIIFVVVNLAIALA-LMEGDMFSaLSWILGFYSNFAIAWVV 394
                     6666666**99999999**************999999999999888.999999**************9.777777775445799*********** PP

  Transp_cyt_pur 365 viiadyfvvrrgylklaalytrrrgsaYwyrkgvNwravaayivGiaa 412
                     v+  d  +++     + a+   rrg +Y+    vN+  v+++ +++ +
      CTQ30008.1 395 VVATDISFNKGLLKLAPAQPEYRRGMIYN----VNPVGVVSFGLAAGL 438
                     ***99988876666555666667888887....666665555444444 PP

>> La_HTH_kDCL  La HTH in kinetoplastid DICER domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.7e-05      0.34       8      45 ..     240     277 ..     235     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.7e-05
  La_HTH_kDCL   8 riLRlvsvystalqnlgtlesillas.GWvPleevlsel 45 
                   +LR+ ++++++ ++++ +  +++a  GWv l  +++ +
   CTQ30008.1 240 DYLRFMPPKTAE-NRKSWWLAVFSAGpGWVVLGAIKQII 277
                  59********99.666***************99999876 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.2   7.3e-05      0.43       4      32 ..     502     533 ..     502     534 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.3e-05
  Zn_ribbon_SprT   4 vYrCtgCgreythhlsirrhn...YrCrrCkg 32 
                     vY+C++C +ey+++     h+    +C  Ck+
      CTQ30008.1 502 VYQCVSCEEEYERPDVMHSHKhqgAICSLCKS 533
                     7************9888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1050  (0.0585643); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3641.79
//
Query:       CTQ30009.1  [L=337]
Description: putative O-sialoglycoprotein endopeptidase gcp [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.9e-104  347.3   0.0   7.9e-104  347.1   0.0    1.0  1  Peptidase_M22   Glycoprotease family
    2.4e-07   30.7   0.0    0.00014   21.6   0.0    2.1  2  Carbam_trans_N  Carbamoyltransferase N-terminus
     0.0006   19.4   0.0     0.0029   17.1   0.0    1.9  1  BcrAD_BadFG     BadF/BadG/BcrA/BcrD ATPase family
  ------ inclusion threshold ------
       0.16   11.4   0.0       0.31   10.5   0.0    1.4  1  TrwC            TrwC relaxase


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.1   0.0  1.8e-107  7.9e-104       2     271 .]      24     307 ..      23     307 .. 0.97

  Alignments for each domain:
  == domain 1  score: 347.1 bits;  conditional E-value: 1.8e-107
                    CEXEEEEEEEEE....SSSSHHHHHHHHHHHHHHHHHHHHHHHTSTGGGEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHHHHCC CS
  Peptidase_M22   2 vlanvvasqkelhakyGGvvPelasraHserllplieealaeaglsledldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleahalaa 97 
                    +lan ++sq +lha+yGGvvPelasr H+++ +pli++al+eagl+ +d+da+a+t+gPGl+++L+vG++++++la+a+n+P ++V+h+e+h+la+
     CTQ30009.1  24 LLANQLYSQVKLHADYGGVVPELASRDHVRKTVPLIQAALKEAGLTAKDIDAVAYTAGPGLVGALLVGATVGRALAFAWNVPAIPVHHMEGHLLAP 119
                    799********************************************************************************************* PP

                    HCTSEC.SSC.EEEEESSSTEEEEEECT.TEEEEEEEESSSEHHHHHHHHHHHHT..SSCCHHHHHHHCTC..S.......EET...TEEE.CHHH CS
  Peptidase_M22  98 rleeke.efP.vvllvsGghtqvylvke.gryeilgetlddaagealdkvarllglpypggpkieklakeg..kkiefprplkg...ldfsfsGlk 185
                    +le+++  fP v+llvsGghtq++ v++ g+ye+lge++ddaagea+dk+a+llgl+ypggp ++k+a++g   ++ fprp+++   ldfsfsGlk
     CTQ30009.1 120 MLEDNPpAFPfVALLVSGGHTQLISVTGiGQYELLGESIDDAAGEAFDKTAKLLGLDYPGGPMLSKMASQGteGRFVFPRPMTDrpgLDFSFSGLK 215
                    ***6566****************************************************************8666********************* PP

                    HHHHHHHST.T.....HHHHHHHHHHHHHHHHHHHHHHHHHHCTBSEEEEESGGGGXHHHHHCHCCHHHHTTSEEEXXXHHHHSSXCHHHHH CS
  Peptidase_M22 186 tavlkelek.e.....vedlaasfqeavvdhlvekteralklpkakelvilGGvaankrLrealeeeaeelglkliiPplkyctdnaamiaw 271
                    t +++++++       ++d+a +f++avvd+l+ k+ ral++++ k+lv++GGv+an+ Lr++l+e+ +++g ++++ ++++ctdn+amia+
     CTQ30009.1 216 TFAANTIRSnGddeqtRADIARAFEDAVVDTLMIKCRRALEQTGFKRLVMAGGVSANRTLRAKLAEMMQKRGGEVFYARPEFCTDNGAMIAY 307
                    *******443247899**************************************************************************97 PP

>> Carbam_trans_N  Carbamoyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00072       3.2      42      73 ..      53      84 ..       2      99 .. 0.80
   2 !   21.6   0.0   3.2e-08   0.00014     251     314 ..     217     281 ..     208     306 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00072
  Carbam_trans_N 42 lpklkaidyaleeagvelsdiDqivfdeidge 73
                     +++  i++al+eag+ ++diD +++ + +g 
      CTQ30009.1 53 RKTVPLIQAALKEAGLTAKDIDAVAYTAGPGL 84
                    4445569******************9987765 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 3.2e-08
  Carbam_trans_N 251 feasalrlkearek.dedlaAsiqvflErlvvevlnivyeklkirnLclaGGvalNiklNsalle 314
                     f+a ++r++   e+   d+a +++ ++ ++++   + + e+++ ++L +aGGv++N +l ++l e
      CTQ30009.1 217 FAANTIRSNGDDEQtRADIARAFEDAVVDTLMIKCRRALEQTGFKRLVMAGGVSANRTLRAKLAE 281
                     55555555444433134666666666666666669999******************999999876 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.5e-07    0.0029      41     247 ..      52     290 ..      17     304 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.5e-07
                  .....HHHHHHHHHHT--GGG...........ECEE..EEESTTCCCTCTTBSEEE-..........HHHHHHHHHHHH-TT--........EEEEEE CS
  BcrAD_BadFG  41 ekvleealtealerageeead...........ieetylvgtgyGratlpekfekeiirs........eilvhgdGavalypgtr........tvldig 111
                  ++  +  +++al++ag++++d           ++   lvg+ +Gr             +         i vh++  ++l+p  +         +l ++
   CTQ30009.1  52 VRKTVPLIQAALKEAGLTAKDidavaytagpgLVGALLVGATVGR-------------AlafawnvpAIPVHHMEGHLLAPMLEdnppafpfVALLVS 136
                  555566789999999999999444444444444444444444444.............3444455557999999999999999899999999999999 PP

                  TTEEEEEEEETTEEEEEEEESS--TT.SHHHHHHHHHHHT-...-TTTHHHHHTT--..............S-------SHHHHHHHHHHHHHTT--H CS
  BcrAD_BadFG 112 Gqdskgiqidkgkvenfqmndrcaag.eGrylgiiadelnm...glreldglaekat..............kkarinstcavfaeaelrdalsggeka 191
                  G ++  i + +  + +  +   ++ +  G +++ +a+ l++   g  +l  +a ++t                  + s  + fa   +r+     +++
   CTQ30009.1 137 GGHTQLISVTGIGQYELLGE--SIDDaAGEAFDKTAKLLGLdypGGPMLSKMASQGTegrfvfprpmtdrpGLDFSFSGLKTFAANTIRSNGDDEQTR 232
                  99999999984333333333..33331477899999999883334568888888888999999999998542245678899***************** PP

                  HHHHHHHHHHHHHHHHHHHHTT---SS...EEEESGGGG-HHHHHHH.....HHHH-S CS
  BcrAD_BadFG 192 edIlaglhraialrvialisrsggvtde..vtltGGvakneaavkelrklvkenygev 247
                   dI +    a+ + ++   +r  + t    +++ GGv+ n  +  +l ++ +++ gev
   CTQ30009.1 233 ADIARAFEDAVVDTLMIKCRRALEQTGFkrLVMAGGVSANRTLRAKLAEMMQKRGGEV 290
                  **********99999888888777765557***********************99997 PP

>> TrwC  TrwC relaxase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     7e-05      0.31      72     120 ..     192     249 ..     130     286 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7e-05
        TrwC  72 e......rerkavagfDltfsaPKSvSllal..vg.dderraaieaahdaAvkaalal 120
                 e      r  + ++g+D+ fs  K+         g d+++ra+i++a+++Av ++l +
  CTQ30009.1 192 EgrfvfpRPMTDRPGLDFSFSGLKTFAANTIrsNGdDEQTRADIARAFEDAVVDTLMI 249
                 044444355789*********88**99886632333577899************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2633.54
//
Query:       CTQ30010.1  [L=71]
Description: 30S ribosomal protein S21 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-22   77.1   6.5      6e-22   77.1   6.5    1.9  2  Ribosomal_S21  Ribosomal protein S21


Domain annotation for each model (and alignments):
>> Ribosomal_S21  Ribosomal protein S21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   6.5   3.3e-26     6e-22       2      54 ..       4      56 ..       3      57 .. 0.97
   2 ?    0.2   0.9     0.034   6.1e+02      43      53 ..      58      68 ..      56      70 .. 0.58

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 3.3e-26
  Ribosomal_S21  2 VvVkdgenierALkrfkrkveragvirevrrrryyekpsekrkrkkkearrrr 54
                   ++V+++e+++ AL+rfkr +e+agv++evrrr++yekp+ +rkr+k+ a +r+
     CTQ30010.1  4 IKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRH 56
                   89************************************************996 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.034
  Ribosomal_S21 43 rkrkkkearrr 53
                   +k +++ arr 
     CTQ30010.1 58 KKLARENARRT 68
                   56666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 551.27
//
Query:       CTQ30011.1  [L=581]
Description: DNA primase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-43  146.3   0.0    7.7e-43  145.6   0.0    1.3  1  Toprim_N        DNA primase catalytic core, N-terminal domain
    3.8e-41  138.9   0.1      7e-41  138.0   0.1    1.4  1  zf-CHC2         CHC2 zinc finger
    4.3e-32  111.3   0.2    4.3e-32  111.3   0.2    1.9  3  DnaG_DnaB_bind  DNA primase DnaG DnaB-binding
      3e-14   53.2   0.0      7e-14   52.0   0.0    1.7  1  Toprim_2        Toprim-like
    1.5e-13   51.0   0.0    3.8e-13   49.7   0.0    1.6  1  Toprim_4        Toprim domain
    1.9e-12   47.2   0.0    6.5e-12   45.5   0.0    2.0  2  DnaB_bind       DnaB-helicase binding domain of primase
    1.5e-09   38.0   0.0    2.8e-09   37.1   0.0    1.5  1  Toprim          Toprim domain
    1.1e-07   32.1   0.0    2.1e-07   31.2   0.0    1.5  1  Toprim_3        Toprim domain


Domain annotation for each model (and alignments):
>> Toprim_N  DNA primase catalytic core, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.6   0.0   3.4e-46   7.7e-43       1     127 [.     126     251 ..     126     252 .. 0.97

  Alignments for each domain:
  == domain 1  score: 145.6 bits;  conditional E-value: 3.4e-46
                 HHHHHHHCSCHHHHHHHHHCTT--HHHHHHCT-EEE-SHSCHHHHHHHHCT-HHHHHCCTTCEECSTTT-EEETTTTEEEEEEE-TTS-EEEEEEEESS CS
    Toprim_N   1 fykeelkseegekaleYLkkRglseetiekFqlGyapkswdnllkllkkkkvseeelleagllskkekgklydrFrnRimfPikdakgkvvgFgGRale 99 
                 fy+++l +   + a++YL+kRgls+e+i++F +Gyap +wdn+lk +  ++ +++ l++ag+l+++++g+ ydrFr+R+mfPi+d++g+v+gFgGR+l 
  CTQ30011.1 126 FYQQSLMQPAADPARQYLAKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLG 224
                 7999**********************************************************************************************6 PP

                 S-SS.SEEE--SBTTB-CCC-EETHHHH CS
    Toprim_N 100 eeekaKYlNspetelFkKselLYgldea 127
                 +  + KYlNspet++F+K+++LYgl+ea
  CTQ30011.1 225 DALP-KYLNSPETDIFHKGRQLYGLYEA 251
                 6666.********************998 PP

>> zf-CHC2  CHC2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   0.1   3.1e-44     7e-41       3      96 ..       7     100 ..       5     102 .. 0.97

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 3.1e-44
     zf-CHC2   3 eevidelkeridivdvveeyvkLkkkgkdyvalCPFHeektpsftvspekqfyyCfgCgagGdaikFlmeieklsfveaveklakklgleleae 96 
                 + +i +l  r+divd+++ +vkLkk+gk+++a+CPFH+ektpsftv+ ekqfy+CfgCga+G+ai+Flm+++kl+fve+ve+la++++le+++e
  CTQ30011.1   7 RVFISDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPYE 100
                 66899*************************************************************************************9987 PP

>> DnaG_DnaB_bind  DNA primase DnaG DnaB-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.1   1.1e+04      64      74 ..      84      94 ..      73     133 .. 0.56
   2 ?   -2.9   0.0       4.3   9.5e+03      28      70 ..     351     395 ..     340     430 .. 0.64
   3 !  111.3   0.2   1.9e-35   4.3e-32       1     123 [.     451     573 ..     451     574 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.1
  DnaG_DnaB_bind 64 allaeLaveel 74
                    ++++eLa+++ 
      CTQ30011.1 84 ETVEELAAMHN 94
                    45566655432 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.3
  DnaG_DnaB_bind  28 edpglallreliealaaepelntaaLlerlrg.tp.eeallaeLa 70 
                       +g a++ + +e+++      ++ Ll ++   tp  +a+l++La
      CTQ30011.1 351 RKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLsTPdGRAQLSTLA 395
                     556666677767776543444566677777753556777777776 PP

  == domain 3  score: 111.3 bits;  conditional E-value: 1.9e-35
  DnaG_DnaB_bind   1 vrealallLqhPelagelpdalaleafedpglallreliealaaepelntaaLlerlrgtpeeallaeLaveelqveeeeelerefadalarLqe 95 
                     +r+++ ll+q+P la  +p  ++l++ + pgl+l+ el++ + a+p+l+t++Lle++rgt+e+a+l++L +++  ++++  +e++f+d l+++ +
      CTQ30011.1 451 MRILIGLLVQNPDLAPLVPPLEGLDSRKMPGLSLFSELVKSCLAQPGLTTGQLLEQYRGTKEAATLEKLSMWDDIADKD-IAEQTFTDSLNHMFD 544
                     8************************99****************************************************.6************** PP

  DnaG_DnaB_bind  96 qlverriaeLkaklr.qgLseeEkeelre 123
                     +l+e r++eL+a++r +gLs+eE++el++
      CTQ30011.1 545 SLLELRQEELIARDRtHGLSSEERRELWT 573
                     ***************************97 PP

>> Toprim_2  Toprim-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   3.1e-17     7e-14       2      88 ..     263     348 ..     262     350 .. 0.87

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 3.1e-17
    Toprim_2   2 vfEgaiDalSlaqlgikektnvvalgGtalteaalkllerypekkvvlalDnDkaGrkaakrlaellr...eagvrekirelpegkDwne 88 
                 v+Eg++D+ +laq++i+    +va++Gt+ t  +++ll r  +++v+ ++D D+aGr+aa r+ e +     +g + +++ lp+g+D++ 
  CTQ30011.1 263 VVEGYMDVVALAQYDIN---YAVASLGTSTTADHIQLLFRV-TNNVICCYDGDRAGRDAAWRALETALpymTDGRQLRFMFLPDGEDPDT 348
                 9***************8...9****************9999.888***************998866542334448888899999999986 PP

>> Toprim_4  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   1.7e-16   3.8e-13       3      78 ..     261     325 ..     260     335 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.7e-16
    Toprim_4   3 iiiVEgyaDvlalekagiknvvavlggalspldgirpeklktenlveaekkvkevilaldgDaeGeataerlaell 78 
                 + +VEgy+Dv+al ++ i+ +va+lg++  ++d+i+   l++         +++vi ++dgD +G  +a r++e+ 
  CTQ30011.1 261 LLVVEGYMDVVALAQYDINYAVASLGTST-TADHIQ--LLFR--------VTNNVICCYDGDRAGRDAAWRALETA 325
                 68***************************.******..5555........259*****************999944 PP

>> DnaB_bind  DnaB-helicase binding domain of primase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.5     1e+04      17      27 ..     352     362 ..     346     363 .. 0.79
   2 !   45.5   0.0   2.9e-15   6.5e-12       2      56 .]     370     424 ..     369     424 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.5
                 HHHHHHHHHHH CS
   DnaB_bind  17 pegkaravrea 27 
                  egka++ +++
  CTQ30011.1 352 KEGKAAFEARM 362
                 59***997765 PP

  == domain 2  score: 45.5 bits;  conditional E-value: 2.9e-15
                 HHHHHHTTTT--TTSHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHT--HH CS
   DnaB_bind   2 eFlierllegydlstpegkaravrealpllaripdpieRdlYirrlAerlgidee 56 
                  Fl+++ll ++dlstp+g+a++   alpl+ ++p + +R ++ ++l  +lgi ++
  CTQ30011.1 370 TFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGETLRIYLRQELGNKLGILDD 424
                 6***************************************************875 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   1.3e-12   2.8e-09       2      97 ..     261     334 ..     260     340 .. 0.92

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.3e-12
                 EEEESSHHHHHHHHHTHTSTEEEEEEESSSSEEEHSTTEEEEEECTTTHHHHHHHHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHTHHHTTTEEE CS
      Toprim   2 lvivEgpsdaktiakalgsgfqavtaslGhildletefkpvyeeiedkkkvlkalkelakradeiilatDpDreGeaiawellevlkellenkigr 97 
                 l +vEg++d+ ++a++   + + ++aslG+ ++ ++                  ++ l +  +++i ++D+Dr+G+ +aw++le + ++  + +++
  CTQ30011.1 261 LLVVEGYMDVVALAQY---DINYAVASLGTSTTADH------------------IQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTD-GRQ 334
                 89**************...9****************..................*****************************999988877.444 PP

>> Toprim_3  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   9.3e-11   2.1e-07       2      94 ..     261     355 ..     260     356 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 9.3e-11
    Toprim_3   2 liivEGietaLsileartgaaviAllsaanlkaiawpe.rgkrvviaaDnDaandGreaaeklaerlea...agieavllepaegeDwndvlqkeGa 94 
                 l++vEG+ ++ ++++ + + av  l   +  + i++ +   ++v+ + D+D a  Gr aa+++ e +     +g++++++  ++geD + +++keG+
  CTQ30011.1 261 LLVVEGYMDVVALAQYDINYAVASLGTSTTADHIQLLFrVTNNVICCYDGDRA--GRDAAWRALETALPymtDGRQLRFMFLPDGEDPDTLVRKEGK 355
                 78***********8788888666666667888*****868889999*******..********9988644449***********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4119.70
//
Query:       CTQ30012.1  [L=613]
Description: RNA polymerase, sigma 70 (sigma D) factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-75  251.1   9.3    8.8e-75  251.1   9.3    2.8  3  Sigma70_ner     Sigma-70, non-essential region
    6.6e-30  103.0   5.1    6.6e-30  103.0   5.1    2.9  2  Sigma70_r1_1    Sigma-70 factor, region 1.1
    3.8e-29  100.6   1.0    3.8e-29  100.6   1.0    3.9  3  Sigma70_r3      Sigma-70 region 3
    6.8e-22   77.0   0.3    1.8e-21   75.7   0.3    1.8  1  Sigma70_r2      Sigma-70 region 2
      1e-18   66.6   0.8      1e-18   66.6   0.8    3.5  3  Sigma70_r4      Sigma-70, region 4
    2.2e-13   50.0   0.3    1.8e-12   47.0   0.1    2.6  2  Sigma70_r1_2    Sigma-70 factor, region 1.2
  ------ inclusion threshold ------
       0.36   10.7   3.4         30    4.6   0.0    3.7  3  HTH_25          Helix-turn-helix domain
       0.48   10.7   5.0        2.4    8.4   0.3    3.2  3  Sun2_CC2        SUN2 coiled coil domain 2
        1.6    9.2  14.6      0.053   13.9   7.9    2.0  1  CENP-B_dimeris  Centromere protein B dimerisation domain
        3.1    7.5  12.4       0.06   13.1   5.5    1.7  2  Cwf_Cwc_15      Cwf15/Cwc15 cell cycle control protein
        9.1    6.8  11.5        2.3    8.7   0.5    4.0  4  FlgN            FlgN protein


Domain annotation for each model (and alignments):
>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   2.0      0.31   5.1e+02      21      64 ..      40      82 ..      33     116 .. 0.61
   2 !  251.1   9.3   5.4e-78   8.8e-75       1     204 []     137     348 ..     137     348 .. 0.90
   3 ?   -3.4   0.1       4.7   7.6e+03     123     141 ..     574     592 ..     568     600 .. 0.50

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.31
  Sigma70_ner 21 rLrdiidGflD......eeeeeeeeeeeedeeeeeeeedddeeeseseaa 64
                 +++dii+ ++D      ee++++++ + ++++++e++       +e++a+
   CTQ30012.1 40 QIEDIIQMINDmgiqvmEEAPDADDLMLAENTADEDA-------AEAAAQ 82
                 6889999777788877655555555444433333332.......222222 PP

  == domain 2  score: 251.1 bits;  conditional E-value: 5.4e-78
  Sigma70_ner   1 yPetiaellelydrveageirLrdiidGflD............eeeeeeeeeeeedeeeeeee.edddeeeseseaadeeelkeealekfeelreqye 85 
                  yPe+i++lle+ydrvea+e rL+d+i+Gf+D                    +e ++ee +++e ed+de++++++++d+++++e a+ekf+elr+qye
   CTQ30012.1 137 YPEAITYLLEQYDRVEAEEARLSDLITGFVDpnaeedmaptatH-----VGSELSQEEMDDDEdEDEDEDADDNSDDDNSIDPELAREKFAELRTQYE 229
                  9******************************9998776554320.....2222222222222224444678899************************ PP

  Sigma70_ner  86 klrkalkkkgrkskkyekareelseefkefrLtpkqidrLveqlrslvervraqEreimrlcverakmprkdFiksFpgnetdlewlekllaagkpws 183
                   +r ++k kgr+++++++++ +lse+fk+frL+pkq+d+Lv+++rs+++rvr+qEr im+lcve++kmp+k+Fi+ F+gnet+++w+++++a++kpws
   CTQ30012.1 230 LTRDTIKAKGRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRSMMDRVRTQERIIMKLCVEQCKMPKKNFITLFTGNETSETWFNAAVAMNKPWS 327
                  ************************************************************************************************** PP

  Sigma70_ner 184 ekleeveeeiqelqqklaeie 204
                  ekl ev+e++q+  qkl++ie
   CTQ30012.1 328 EKLLEVKEDVQRGLQKLQQIE 348
                  *******************98 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.7
  Sigma70_ner 123 drLveqlrslvervraqEr 141
                  ++  +q   + er+r+ E 
   CTQ30012.1 574 EEVGKQFDVTRERIRQIEA 592
                  3333344444444444444 PP

>> Sigma70_r1_1  Sigma-70 factor, region 1.1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   5.1   4.1e-33   6.6e-30       2      77 ..       4      79 ..       3      83 .. 0.91
   2 ?   -2.2   8.2       2.7   4.5e+03      58      75 ..     190     208 ..     166     215 .. 0.57

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 4.1e-33
                  HHHHHHHHHHHHHHHHSCEEHHHHHHHGCCSS--HHHHHHHHHHHHCCT-EEE-SS-.........S-SSSXXXXX CS
  Sigma70_r1_1  2 kqkaavkeLikkgKkkGyLtyeEindaLpddeldseqiediiemLedmgIdvveeaededellleeeaedaeeede 77
                  + ++++k L+++gK++GyLty+E+nd+Lp+d++ds+qiedii+m++dmgI+v+eea+d+d+l+l e+++d+++ + 
    CTQ30012.1  4 NPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDLMLAENTADEDAAEA 79
                  5799***********************************************************8777777666554 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.7
                   -..........S-SSSXXX CS
  Sigma70_r1_1  58 ededell.leeeaedaeee 75 
                    d+de +  +e+a+d++++
    CTQ30012.1 190 MDDDEDEdEDEDADDNSDD 208
                   2222222133333333333 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.5   2.4e+03      28      40 ..     349     361 ..     344     364 .. 0.86
   2 !  100.6   1.0   2.3e-32   3.8e-29       1      76 [.     458     533 ..     458     535 .. 0.96
   3 ?    0.8   0.0      0.33   5.3e+02      22      40 ..     572     590 ..     566     606 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
                 HHHTXXHHHHHHH CS
  Sigma70_r3  28 eeLglseekVrev 40 
                 ee+gl++e+V+++
  CTQ30012.1 349 EETGLTIEQVKDI 361
                 899*******987 PP

  == domain 2  score: 100.6 bits;  conditional E-value: 2.3e-32
                 XHHHHHHHHHHHHHHHHSSXXXHHHHHHHHTXXHHHHHHHHHHHXXXEETTXBSSSSTTXBSTTTXBXSSSXXHHH CS
  Sigma70_r3   1 EklnkikraqreLeqelgrePtpeEiAeeLglseekVrevleaarepvSldlpvgeeedtelgdlleddeaespee 76 
                 E++nk++r++r++ qe+grePtpeE+Ae++ ++e+k+r+vl++a+ep+S+++p+g++ed++lgd++ed+  e p +
  CTQ30012.1 458 ETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD 533
                 89*******************************************************************8887765 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.33
                 XHHHHHHHHTXXHHHHHHH CS
  Sigma70_r3  22 tpeEiAeeLglseekVrev 40 
                 t eE+ ++ +++ e++r++
  CTQ30012.1 572 TLEEVGKQFDVTRERIRQI 590
                 6789999999999999887 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.3   1.1e-24   1.8e-21       1      70 [.     379     448 ..     379     449 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 1.1e-24
                 HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                 +ve++l+lv ++a++++++g+++ Dl+Qe++++l++av++f+  rg++fs+++++++r+a+ + + +++r
  CTQ30012.1 379 MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 448
                 689**************************************************************99998 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.35   5.8e+02      23      43 ..     344     364 ..     340     365 .. 0.88
   2 ?    2.1   0.1     0.087   1.4e+02       5      42 ..     463     499 ..     460     503 .. 0.73
   3 !   66.6   0.8   6.3e-22     1e-18       1      50 []     547     600 ..     547     600 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.35
                 HHHHHHHHTS-HHHHHHHHHH CS
  Sigma70_r4  23 leEIgerlgiSrerVrqiekr 43 
                 l++I e+ g++ e V+ i +r
  CTQ30012.1 344 LQQIEEETGLTIEQVKDINRR 364
                 78888999********99887 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.087
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiek 42 
                 L+   r+ l+    e+ T eE++er+ +++  +r  +k
  CTQ30012.1 463 LNRISRQMLQEMGREP-TPEELAERMLMPEDKIRKVLK 499
                 5555555555555555.99***********99998776 PP

  == domain 3  score: 66.6 bits;  conditional E-value: 6.3e-22
                 HHHHS-HHHHHHHHHHH....TTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrf....geglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 +La L++re +vl++rf      ++TleE+g++++++rer+rqie++AlrkLR+
  CTQ30012.1 547 VLAGLTAREAKVLRMRFgidmNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 600
                 599**************************************************7 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.1   1.1e-15   1.8e-12       1      31 [.      96     126 ..      96     128 .. 0.98
   2 ?   -1.3   0.0       1.4   2.3e+03       7      14 ..     471     478 ..     471     479 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.1e-15
                   HHHHHHHHHHHHSX--THHHHHHHHHHHHCC CS
  Sigma70_r1_2   1 DpvrlYLrEIGriPLLtaeEEveLAkrieaG 31 
                   Dpvr+Y+rE+G + LLt+e E+++Akrie+G
    CTQ30012.1  96 DPVRMYMREMGTVELLTREGEIDIAKRIEDG 126
                   9****************************99 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.4
                   HHHHHHSX CS
  Sigma70_r1_2   7 LrEIGriP 14 
                   L+E+Gr P
    CTQ30012.1 471 LQEMGREP 478
                   89****88 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.28   4.5e+02      13      30 ..     344     361 ..     338     366 .. 0.73
   2 ?    3.3   0.1     0.044        72       6      30 ..     436     460 ..     434     464 .. 0.89
   3 ?    4.6   0.0     0.018        30      12      41 ..     572     601 ..     568     612 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.28
                 HHHHHHHSS--HHHHHHH CS
      HTH_25  13 leevaketkIrkdyleal 30 
                 l+++++et +  ++++ +
  CTQ30012.1 344 LQQIEEETGLTIEQVKDI 361
                 677777777777777766 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.044
                 HHTTT--HHHHHHHSS--HHHHHHH CS
      HTH_25   6 RearglsleevaketkIrkdyleal 30 
                 R+a   s+ + a+ ++I+++++e +
  CTQ30012.1 436 RQAITRSIADQARTIRIPVHMIETI 460
                 7788889***************987 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.018
                 -HHHHHHHSS--HHHHHHHHCT--TTSS-H CS
      HTH_25  12 sleevaketkIrkdylealEeddfdalpep 41 
                 +leev k+  +  + ++++E+  + +l +p
  CTQ30012.1 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHP 601
                 89**********************999977 PP

>> Sun2_CC2  SUN2 coiled coil domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.2   8.4e+03      27      39 ..     177     189 ..     170     190 .. 0.77
   2 ?    8.4   0.3    0.0015       2.4      24      51 ..     334     361 ..     326     364 .. 0.83
   3 ?    2.9   0.1     0.082   1.3e+02      30      57 ..     568     596 ..     538     597 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.2
    Sun2_CC2  27 aaasvgvaLqkeG 39 
                 +a+ vg++L +e 
  CTQ30012.1 177 TATHVGSELSQEE 189
                 7899*****9985 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0015
    Sun2_CC2  24 ardaaasvgvaLqkeGvtgvTeeqVhrI 51 
                 ++d+++ +++  q e  tg+T eqV+ I
  CTQ30012.1 334 KEDVQRGLQKLQQIEEETGLTIEQVKDI 361
                 45699999999999************99 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.082
    Sun2_CC2  30 svgvaLqkeG.vtgvTeeqVhrIVnrALk 57 
                   + +L++ G    vT+e +++I  +AL+
  CTQ30012.1 568 NTDHTLEEVGkQFDVTRERIRQIEAKALR 596
                 56677777662468*************98 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   7.9   3.3e-05     0.053      16      47 ..     186     217 ..     177     253 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.3e-05
  CENP-B_dimeris  16 sdeeeeeeeedeededeeddedddevpvpsfg 47 
                     s+ee +++e+++eded +d+ ddd+   p + 
      CTQ30012.1 186 SQEEMDDDEDEDEDEDADDNSDDDNSIDPELA 217
                     67788888888888888888888887666654 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   5.5   3.7e-05      0.06     121     180 ..     184     241 ..      99     304 .. 0.60
   2 ?   -4.2   0.6         7   1.1e+04      50      70 ..     357     377 ..     334     385 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.7e-05
                 -----------------------------------------------.------------- CS
  Cwf_Cwc_15 121 eeeeeeeesdddsdsdsdddddedetaeLlrELekikreraeekerk.erekaeeeekere 180
                 e ++ee ++d+d+d+d+d dd+ d+++ +  EL++ k    +e + + e  +++ ++k r+
  CTQ30012.1 184 ELSQEEMDDDEDEDEDEDADDNSDDDNSIDPELAREK---FAELRTQyELTRDTIKAKGRS 241
                 2233335555666677777777888888888887533...222222202222222222222 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 7
                 HHS-HHHHHHHHHHHHHHHHH CS
  Cwf_Cwc_15  50 ekrdlraeLeeaeaeakakkr 70 
                 + +d+ + +   ea+a++ k+
  CTQ30012.1 357 QVKDINRRMSIGEAKARRAKK 377
                 445555555555555444443 PP

>> FlgN  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1         4   6.6e+03      62     100 ..      45      87 ..      40      93 .. 0.64
   2 ?    8.7   0.5    0.0014       2.3      72     124 ..     307     365 ..     262     366 .. 0.73
   3 ?    2.9   0.0     0.087   1.4e+02      51      79 ..     457     485 ..     452     501 .. 0.77
   4 ?   -0.8   0.1       1.2     2e+03      34      71 ..     542     579 ..     535     607 .. 0.47

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4
                 HHHHHHTT--...SCHHHHHHHHCT.TCCHHHHHHHHHHHHHH CS
        FlgN  62 akllaelgls...aeeatlsellak.eedeelkelwqelkell 100
                  ++++++g +   + ++  + +la+ ++de  +e+ +++ + +
  CTQ30012.1  45 IQMINDMGIQvmeEAPDADDLMLAEnTADEDAAEAAAQVLSSV 87 
                 5677777777775444444455555677777777777766655 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0014
                 SCHHHHHHHHCT......TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH CS
        FlgN  72 aeeatlsellak......eedeelkelwqelkelleelkelnelNgrlieqslefnqrl 124
                 ++++t + + ++      ++ e+l e+ ++++  l++l+++ e  g +ieq  + n+r+
  CTQ30012.1 307 TGNETSETWFNAavamnkPWSEKLLEVKEDVQRGLQKLQQIEEETGLTIEQVKDINRRM 365
                 4455555555555555889*************************************997 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.087
                 HHHHHHHHHHHHHHHHHTT--SCHHHHHH CS
        FlgN  51 lekleqleqkrakllaelglsaeeatlse 79 
                 +e++++l +  +++l+e+g ++ +++l e
  CTQ30012.1 457 IETINKLNRISRQMLQEMGREPTPEELAE 485
                 899******************54444443 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.2
                 TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-- CS
        FlgN  34 agdieaLeelleekqellekleqleqkrakllaelgls 71 
                 a+  + L +l+ +++++l+    ++ + +++l+e+g++
  CTQ30012.1 542 AATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQ 579
                 44444444444444444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1419  (0.0791455); expected 358.6 (0.02)
Passed bias filter:                      688  (0.0383736); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.40
# Mc/sec: 4554.20
//
Query:       CTQ30013.1  [L=168]
Description: G/U mismatch-specific DNA glycosylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-24   86.4   0.0    2.2e-24   86.2   0.0    1.0  1  UDG       Uracil DNA glycosylase superfamily


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   0.0   1.2e-28   2.2e-24       4     154 ..       6     159 ..       3     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 1.2e-28
                 -CTT-SEEEEESSTCHHHHHHSSSS.-STT--HHHHHHHCCCCCCCHHG........CTEEEEESSS....SECGCTTCCCCTCCHHHHHHHHHHHHSS CS
         UDG   4 gppdakvvivGeaPgaeedatglpFsgragnllrkllneaglkrdlese........qgvyitnvvkcrppgnrdtptsaeikacaplleeeiellkpr 94 
                   p ++vv++G +Pg+ ++ tg +F +++gn+++k++++ag++ ++ ++         +++it +v  rp  + ++   +e++ + + l ++ie ++p+
  CTQ30013.1   6 LAPGLRVVFCGINPGKSSAHTGFHF-AHPGNRFWKVIHQAGFTDRQLRPeeelqlldTRCGITMLVE-RPTVQASEVALQELRSGGRELVRKIEEYQPQ 102
                 57899********************.******************99999******************.55334489999******999*********** PP

                 EEEEESHHHHHH..HHHHSCESCCCSCT.......SEEEEES-SSTTTTTTTTSHHHHHHHHHHHH CS
         UDG  95 livllGktaakallgeklgklrgklleak......irvlplphPsplnrnffksnpelkaeawedL 154
                 ++ +lGk+a++  ++      rg+  +++      ++v++lp+Ps+lnr     + +++ +a+++L
  CTQ30013.1 103 ALAVLGKQAFELAFN-----QRGAKWGKQamtigtTQVWVLPNPSGLNRA----TLDKLVAAYREL 159
                 ************532.....334444443355668***************....888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1442.30
//
Query:       CTQ30014.1  [L=51]
Description: hypothetical protein CH1034_300122 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       167  (0.00931452); expected 358.6 (0.02)
Passed bias filter:                      136  (0.00758548); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 436.86
//
Query:       CTQ30015.1  [L=135]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1028.41
//
Query:       CTQ30016.1  [L=386]
Description: Gene D protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-43  147.8   0.1    5.1e-43  147.5   0.1    1.1  1  Phage_GPD  Phage late control gene D protein (GPD)
  ------ inclusion threshold ------
      0.087   12.2   0.0       0.14   11.5   0.0    1.3  1  GCV_T      Aminomethyltransferase folate-binding domain


Domain annotation for each model (and alignments):
>> Phage_GPD  Phage late control gene D protein (GPD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   0.1   5.7e-47   5.1e-43       3     303 ..      44     364 ..      42     365 .. 0.81

  Alignments for each domain:
  == domain 1  score: 147.5 bits;  conditional E-value: 5.7e-47
   Phage_GPD   3 gls.elfefeldllssdadldlkallgqpvtvsielddgskrvihGlvtea.eqvga.....dgr.lar..YrltlrPwlwll..tlr.rdsriFqnkt 88 
                 g++ +++++eld   ++++l   +l+g+++ +++           G+ + a    g+     d+  + +  +++t+r++ + +  tl+ r++ ++++kt
  CTQ30016.1  44 GFEaDQLDIELD---DADGLVELPLRGAVLNLYL-----------GWKGFAlI--GKgsftvDEVeHHGapDTVTIRARSADFrgTLNsRREESWHDKT 126
                 666688888999...888999999**********...........55555531..222234444433335699**********88888899999***** PP

   Phage_GPD  89 vpdIleavlaehgiavekrfrlers......ypkreycvQyrESdlaFvsRLleeeGifyffehedgshtLvladassalppsaggpsiryhrqsgtea 181
                 +++I+ a++++        ++l++s      ++k+++++Q++ESd++F++RL+e++G  + ++     ++L++++a++++++  +g++i++++ +++++
  CTQ30016.1 127 LGEIVAAIATR--------NKLTSSvipelaGIKIPHIDQSQESDAKFLTRLAERNGGEVSVKA----GKLLFLKAGRGVTA--SGKTIPQVTITRSDG 211
                 **********6........4566655666779******************************99....9**********555..6***********999 PP

   Phage_GPD 182 ereaitrfaearrlapgkvtlrdydykkpkad...............................lsaeaaqpr.........aaasalevydypg..... 235
                    + ++f++a+r a++ vt+++ ++k+pk++                               +       +                     g     
  CTQ30016.1 212 ---DRHQFSIADRGAYTGVTAKWLHTKDPKPQkqkvalkrkpkeqhlralqhpkakpvtkkktV-------KtpearegeyM----------VGeddnv 290
                 ...89********************************999999999999777776654333221.......01222222331..........2233334 PP

   Phage_GPD 236 .....dyaskaegerlarlrlealrararrfsg..esnvrglapGrtftlsghprkaaanr.eylitsvehhgenn 303
                       +++ka+++r+a++++++l++  ++fs+  ++++++l+p++++++ g+   + +++ +++it+v h+++n+
  CTQ30016.1 291 falttIFSTKAQAMRAAQAKWDKLQRGVAEFSIrlATGRADLYPETPVQVAGFK--RVIDEqSWTITKVMHSLSNG 364
                 5555589999**********************999*****************65..455655**********9996 PP

>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.5e-05      0.14      85     158 ..     195     271 ..     154     305 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.5e-05
       GCV_T  85 nedGgvidDlivarlded.efllvvnaankekdl.awlekaaek.kdldvevedvteelallalqGPkarevlskll 158
                 + +G  i  ++++r d d + + +++ ++ + +  +wl  +  k ++++v ++++ +e +l alq Pka+ v +k +
  CTQ30016.1 195 TASGKTIPQVTITRSDGDrHQFSIADRGAYTGVTaKWLHTKDPKpQKQKVALKRKPKEQHLRALQHPKAKPVTKKKT 271
                 457888999******98876667777777777765999885444899************************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3108.80
//
Query:       CTQ30017.1  [L=159]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-43  145.1   0.0    8.2e-43  144.8   0.0    1.1  1  Phage_P2_GpU  Phage P2 GpU


Domain annotation for each model (and alignments):
>> Phage_P2_GpU  Phage P2 GpU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8   0.0   4.6e-47   8.2e-43       1     120 []       6     125 ..       6     125 .. 0.99

  Alignments for each domain:
  == domain 1  score: 144.8 bits;  conditional E-value: 4.6e-47
  Phage_P2_GpU   1 GdfvFelntlafqelqrstsarwaeherlggrpalqfvGpgeetitlsgvlfpeltggreeleaLramaeagealpLvlGtgevlgkwviesisetq 97 
                   G+fvF+ +tl+ q lqr+ ++rw++++r+g+r++ q++Gpgee++tl g+l+peltgg+ +++ +r ma++g+a+pL +Gtg ++g++vi +iset 
    CTQ30017.1   6 GMFVFMRQTLPHQTLQRDAEYRWPSNSRVGKRDSFQYLGPGEEKVTLAGTLYPELTGGKLTMTGIRLMADQGRAWPLLDGTGIIYGMYVINNISETG 102
                   89*********************************************************************************************** PP

  Phage_P2_GpU  98 sefladGaarkieftlsLkryde 120
                   s f+adG+arki+ftl+L+r+de
    CTQ30017.1 103 SLFFADGTARKIDFTLTLTRVDE 125
                   ********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1219.45
//
Query:       CTQ30018.1  [L=813]
Description: putative prophage tail length determinator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-37  127.7  22.0    4.9e-37  127.7  22.0    5.4  3  PhageMin_Tail  Phage-related minor tail protein
  ------ inclusion threshold ------
       0.02   15.8   2.0       0.02   15.8   2.0    4.4  2  Rotamase_2     PPIC-type PPIASE domain
       0.02   13.7   0.2      0.042   12.6   0.2    1.5  1  DUF2207        Predicted membrane protein (DUF2207)
       0.15   11.9   0.3       0.37   10.7   0.3    1.6  1  DUF1418        Protein of unknown function (DUF1418)
       0.26   11.0   4.2       0.73    9.5   4.2    1.8  1  DUF21          Cyclin M transmembrane N-terminal domain
        2.7    8.5  10.5         11    6.5   1.9    3.4  3  SecD-TM1       SecD export protein N-terminal TM region
        2.8    7.3  14.4        6.8    6.0  14.4    1.6  1  Cluap1         Clusterin-associated protein-1
        2.8    7.7   6.4          3    7.6   3.6    2.4  2  Lectin_N       Hepatic lectin, N-terminal domain
        3.6    8.0  18.4        2.6    8.4  14.3    2.7  3  Fez1           Fez1
        5.5    6.2  11.6         18    4.6  11.7    1.8  1  DUF4763        Domain of unknown function (DUF4763)
        6.7    6.4  15.4         12    5.5   6.0    2.9  2  DUF4201        Domain of unknown function (DUF4201)


Domain annotation for each model (and alignments):
>> PhageMin_Tail  Phage-related minor tail protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7  22.0     3e-40   4.9e-37       1     198 []     239     440 ..     239     440 .. 0.97
   2 ?    1.5   1.8      0.14   2.3e+02      56     102 ..     442     482 ..     441     500 .. 0.82
   3 ?    4.7   0.1     0.015        24      29     159 ..     556     685 ..     528     739 .. 0.76

  Alignments for each domain:
  == domain 1  score: 127.7 bits;  conditional E-value: 3e-40
  PhageMin_Tail   1 rdlakelgektkysatelaealeelasaGvsteeilnllegaaklataggaddleeaaeilstalnafglsaadaeeaaDvlaaaanngatsvedl 96 
                    r++a++lg +t+ sa+++a a+  +a+aG +++ i+++++ ++++a a   + +ee a  l  + +af+l+++++ +++Dvl+ + n++a+++++l
     CTQ30018.1 239 RKQARQLGDNTAASADDAAGAQIIIAKAGGDAAAIQAATPVTLNMALANRRT-MEENAGLLMGMKSAFQLTNDQVSHIGDVLSMTMNKTAADFDGL 333
                    589***********************************************78.******************99*********************** PP

  PhageMin_Tail  97 aealkevgavakaaGlsfeetaaalallaaagikgseAgtalknllsrl...tkeaaealkklGistkdaqgkmksldeiledlsealkkl..tda 187
                    ++al+++++vak+aG+s+ee+aa++++l +a i+gs+Agt+ +++lsrl   t +a++a+k+lGi+t d++g+ ++   il++++ +++k    + 
     CTQ30018.1 334 SDALTYAAPVAKNAGVSIEEAAAMVGALHDAKITGSMAGTGSRAILSRLqapTGQAYAAIKELGIKTADSKGNTRPIFTILKEMQASFEKNklGTG 429
                    *************************************************99888********************************9988754777 PP

  PhageMin_Tail 188 qraaalstlfG 198
                    qra++++t+fG
     CTQ30018.1 430 QRAEYMKTIFG 440
                    **********9 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.14
  PhageMin_Tail  56 eaaeilstalnafglsaadaeeaaDvlaaaanngatsvedlaealke 102
                    ea+++++ +++a +  +      +D l+aa++++  + e+l ++++ 
     CTQ30018.1 442 EASSAAAVLMTAAQSGK------LDKLTAAFKASDGKTEELVKVMQD 482
                    78888888888888776......999**************9999987 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.015
  PhageMin_Tail  29 GvsteeilnllegaaklataggaddleeaaeilstalnafglsaadaeeaaDvlaaaanngatsvedlaealkevgavakaaGlsfeetaaalall 124
                    G+ +  ++++++++ ++ata g+   ++++  + ta++a   +   + +++ +++a+a       e ++  +  v    +aa    +e +a l  +
     CTQ30018.1 556 GLIAWPVITGVNAIIAAATALGTV-FTTVTGGIMTAIGAISWP---VVAVVAAIVAGALLIRKYWEPISAFFGGVIEGLRAAFAPVAELFAPLKPM 647
                    5555556788899999******55.999999999999998888...6899999999**************************************** PP

  PhageMin_Tail 125 aa.agikgseAgtalknllsrltkeaaealkkl...Gis 159
                     +  g k   A + ++nl++   k+++e+l+++   G+ 
     CTQ30018.1 648 FDwLGGKLQAAWDWFNNLIAPV-KSSQETLNSFrdaGVL 685
                    ********************99.8888888887666433 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.8      0.92   1.5e+03      21      66 ..     219     267 ..     213     313 .. 0.57
   2 ?   15.8   2.0   1.2e-05      0.02       5     102 ..     416     522 ..     415     537 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.92
  Rotamase_2  21 egktle.lavvkdqvaaeaalalakag...aekdfaalakgnskkaadlg 66 
                   ++++ l v+k++++  a +++a++    + ++ a+ a g+ + +a++g
  CTQ30018.1 219 NSELQAvLGVAKESAEMMALRKQARQLgdnT-AASADDAAGAQIIIAKAG 267
                 4444443445556666666677777664432.223333333333333333 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.2e-05
  Rotamase_2   5 evkayYeankdefskpegktlelavvkdqvaaeaalalakagae.kdfaalakgnskkaadlgifesa........snlpeelakaafalkpgevsgpv 94 
                 e +a +e+nk   ++++ + + +    ++ aa+  + +a+ g   k  aa++ +++k+++ + + +++        +   e++ + +f+ ++  + ++v
  CTQ30018.1 416 EMQASFEKNKLGTGQRAEYMKTIFGEEASSAAAVLMTAAQSGKLdKLTAAFKASDGKTEELVKVMQDNlggdfkefQSAYEAVGTDLFDQQESSLRKLV 514
                 89999*************999999999999999999999998773666777777777777777777777777766666888****************** PP

  Rotamase_2  95 etdngyyi 102
                 +t++gy++
  CTQ30018.1 515 QTATGYVL 522
                 ******96 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   2.6e-05     0.042     322     428 ..     476     605 ..     402     622 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.6e-05
     DUF2207 322 lldlLfdkseegkslkeikkyakkskkkakkfkkalkkwksavkk.........................kergyfdkkgkkklkklsalglgliilgl 395
                 l+++++                       +++   +k+++sa+++                         +  ++++++++  ++   + +++l+++g+
  CTQ30018.1 476 LVKVMQ-----------------------DNLGGDFKEFQSAYEAvgtdlfdqqesslrklvqtatgyvlSLDKWIQRNKELAQTLGVITAVALGVVGM 551
                 222222.......................222222222222222222223335555555555557777777999*****99999999999999999999 PP

     DUF2207 396 ilillallllvll............................lvfllilllillliaiivll 428
                 i+++++++  v++                                    + ++++a+++++
  CTQ30018.1 552 IGAIGLIAWPVITgvnaiiaaatalgtvfttvtggimtaigA-------ISWPVVAVVAAI 605
                 999999998888899999999998888887777744433322.......333333333333 PP

>> DUF1418  Protein of unknown function (DUF1418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   0.00022      0.37      26      76 ..     521     571 ..     513     577 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00022
     DUF1418  26 yLsvndylsLPgplsskeaaivmiflGvllllPaavalvwrvaqalapllr 76 
                  Ls++++++  ++l++   +i  + lGv+ ++ a+  + w v+ ++++++ 
  CTQ30018.1 521 VLSLDKWIQRNKELAQTLGVITAVALGVVGMIGAIGLIAWPVITGVNAIIA 571
                 59******************************************9998875 PP

>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.2   0.00045      0.73      59     138 ..     565     641 ..     505     659 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00045
       DUF21  59 gntlvnillsalatalfvellaegalavviatviv.tllilvfgEilPkslal.kyaekialalapplrvlmvllyPlvwll 138
                 g++ +  +++al+t++ + +      +++ a+ ++  +++ v++ i+  +l + ky e+i++++ ++++ l   ++P++ l+
  CTQ30018.1 565 GVNAIIAAATALGTVFTTVTG-----GIMTAIGAIsWPVVAVVAAIVAGALLIrKYWEPISAFFGGVIEGLRAAFAPVAELF 641
                 455555555566655533332.....5777888888************9999968***********************9664 PP

>> SecD-TM1  SecD export protein N-terminal TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   1.3     0.016        26      51      89 ..      56      94 ..      42     107 .. 0.84
   2 ?    6.5   1.9    0.0069        11      45      86 ..     114     154 ..     101     169 .. 0.80
   3 ?   -2.2   0.0       3.5   5.7e+03      41      87 ..     347     391 ..     343     393 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.016
    SecD-TM1 51 skveqaLkeagievksielenesllvrfestdqqlkAkd 89
                +k++++L+  g e k++++e+ +l ++f++t+q ++A+ 
  CTQ30018.1 56 RKASAQLAVTGQELKKAKQEAAALAIQFRNTEQPTRAQA 94
                577889999999*******************99998875 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0069
    SecD-TM1  45 vdeatlskveqaLkeagievksielenesllvrfestdqqlk 86 
                 + +  +++ +q L++agi+++ ++ ++++l+  +++t +ql+
  CTQ30018.1 114 LRQ-AVQRQRQELSQAGINTRTLAADERRLKTSISETTAQLN 154
                 344.447889******************************96 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.5
    SecD-TM1  41 atlkvdeatlskveqaLkeagievksielenesllvrfestdqqlkA 87 
                 a+++++ea    +  aL++a+i+   + + ++++l r++ +  q+ A
  CTQ30018.1 347 AGVSIEEAA--AMVGALHDAKITGSMAGTGSRAILSRLQAPTGQAYA 391
                 555666655..678899999999999999999999999999988876 PP

>> Cluap1  Clusterin-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  14.4    0.0042       6.8     104     219 ..      34     163 ..       7     175 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0042
      Cluap1 104 eeekststeldlssklsdlkaarqlaseitekgasLydlLekeve..............lreartkalsrqleleeiekalkeaikkvkeelektkkal 188
                 + ++++++  +l+ ++s +   r++++++  +g++L ++ ++                   +a+++a +++  l+   ++l++a++++++el++   + 
  CTQ30018.1  34 DIRDTQKSLRELNGQASRIDGFRKASAQLAVTGQELKKAKQEAAAlaiqfrnteqptraQAQAMDAARKSAAALQLKHNSLRQAVQRQRQELSQAGINT 132
                 33333444556666666666667777777777777766544443366666666556553333333444466666667799******************* PP

      Cluap1 189 enlesdeanLeakiekkkqeleraqkrLqsl 219
                 ++l++de+ L++ i   +++l+r+++ L+ +
  CTQ30018.1 133 RTLAADERRLKTSISETTAQLNRQREALARV 163
                 *************************999876 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.6    0.0018         3      44     105 ..      63     127 ..      60     143 .. 0.86
   2 ?   -1.1   0.1      0.91   1.5e+03      76     104 ..     133     161 ..     126     177 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0018
    Lectin_N  44 cVigsqnsqLqreLetLketfsnfssstlaeiqalssq...ggslsekvtsleaklekkqqdlka 105
                 +V g+   + ++e  +L  +f+n+ + t a+ qa++++   +  l+ k +sl+  +++++q+l++
  CTQ30018.1  63 AVTGQELKKAKQEAAALAIQFRNTEQPTRAQAQAMDAArksAAALQLKHNSLRQAVQRQRQELSQ 127
                 6888899999*************************997222455678999***********9975 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.91
    Lectin_N  76 qalssqggslsekvtsleaklekkqqdlk 104
                 ++l++  ++l+  ++   a+l++++++l 
  CTQ30018.1 133 RTLAADERRLKTSISETTAQLNRQREALA 161
                 55666666666666667777766666654 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  14.3    0.0016       2.6      36     156 ..      31     158 ..      25     184 .. 0.70
   2 ?   -0.3   0.0      0.78   1.3e+03      26      50 ..     228     252 ..     215     323 .. 0.82
   3 ?   -3.0   0.0       5.3   8.6e+03     134     152 ..     787     803 ..     713     811 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0016
        Fez1  36 lkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa....lesdeakaqrqe.... 126
                 l +++r+++++l+e + ++++++  +++ +++l v  +el+++k+ea  l  + +++e++++   +++ ++ ++++  +    +   ++ +qrq+    
  CTQ30018.1  31 LSGDIRDTQKSLRELNGQASRIDG-FRKASAQLAVTGQELKKAKQEAAALAIQFRNTEQPTRAQAQAMDAARKSAAALQlkhnS--LRQAVQRQRqels 126
                 77899************9999976.667889999*********99999999999999999999988888876666555544331..2222333333466 PP

        Fez1 127 ..aeeleelkreverlraeLkeerqkkeeqas 156
                     ++++l ++  rl+++++e   + ++q++
  CTQ30018.1 127 qaGINTRTLAADERRLKTSISETTAQLNRQRE 158
                 66444555555555555555555555555543 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.78
        Fez1  26 vtqklseivalkaqlrelrakleek 50 
                 v++   e++al+ q r+l  +  ++
  CTQ30018.1 228 VAKESAEMMALRKQARQLGDNTAAS 252
                 5667789999999999887665554 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.3
        Fez1 134 kreverlraeLk.eerqkke 152
                 +r+   l+ +L+ +er+k+ 
  CTQ30018.1 787 DRQ---LQDALEkYEREKRA 803
                 222...23333212333333 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  11.7     0.011        18      43     153 ..      53     162 ..      22     183 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.011
     DUF4763  43 e.eeeeeldLdeiydelekiKqrvlelrskLalnvpecPeidecvdedlelelltseqpeileLqrnnhkLrqqlaelqqhlkasrkslkelreslcqe 140
                     + + +L  + +el+k Kq +  l  +++ +  e+P  ++ + +d   +     q++ + L+++ ++ rq+l+++  + ++  ++ ++l++s+++ 
  CTQ30018.1  53 DgFRKASAQLAVTGQELKKAKQEAAALAIQFRNT--EQPTRAQAQAMDAARKSAAALQLKHNSLRQAVQRQRQELSQAGINTRTLAADERRLKTSISET 149
                 44667778999999******************55..99*998888888888888888888888888888888888887777776666666666666555 PP

     DUF4763 141 kkrlrklqkrlne 153
                 + +l++ ++ l +
  CTQ30018.1 150 TAQLNRQREALAR 162
                 5555544433333 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.5    0.0089        14      73     136 ..      63     126 ..      21     132 .. 0.91
   2 ?    5.5   6.0    0.0076        12      68     137 ..     114     183 ..     112     190 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0089
     DUF4201  73 tktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqgg 136
                 + t ++l+  k+ + +l+ ++++ ++ ++ + +  ++ rk+   ++l+++ lr+  ++ +q++ 
  CTQ30018.1  63 AVTGQELKKAKQEAAALAIQFRNTEQPTRAQAQAMDAARKSAAALQLKHNSLRQAVQRQRQELS 126
                 567799***********************************************98888887765 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0076
     DUF4201  68 lkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggl 137
                 l++ ++++ ++l++   ++ +l++  ++lk++++e +++l++ r+ l +v ++ +kl + +++ ++ ++l
  CTQ30018.1 114 LRQAVQRQRQELSQAGINTRTLAADERRLKTSISETTAQLNRQREALARVSAQQAKLNAVKQRYQAGKEL 183
                 78889999999999999999***************************************99998876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2056  (0.114675); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 5194.88
//
Query:       CTQ30019.1  [L=39]
Description: putative prophage tail protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-23   81.5   0.0    2.3e-23   81.4   0.0    1.0  1  Phage_P2_GpE  Phage P2 GpE


Domain annotation for each model (and alignments):
>> Phage_P2_GpE  Phage P2 GpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   1.3e-27   2.3e-23       1      36 [.       1      36 [.       1      37 [. 0.98

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 1.3e-27
  Phage_P2_GpE  1 MADiAvvFHWspselddmsLtELldWRerArrRsga 36
                  MADiAv+FHW+psel++msLtEL++WRe+A++Rsg+
    CTQ30019.1  1 MADIAVIFHWPPSELYPMSLTELTTWREKALQRSGN 36
                  **********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       202  (0.0112667); expected 358.6 (0.02)
Passed bias filter:                      175  (0.00976072); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 314.69
//
Query:       CTQ30020.1  [L=91]
Description: putative prophage tail protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.2e-10   39.3   0.1    5.8e-10   39.2   0.1    1.0  1  Phage_TAC_7  Phage tail assembly chaperone proteins, E, or 41


Domain annotation for each model (and alignments):
>> Phage_TAC_7  Phage tail assembly chaperone proteins, E, or 41 or 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.1   3.2e-14   5.8e-10       2      82 ..       7      85 ..       6      86 .. 0.97

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 3.2e-14
  Phage_TAC_7  2 itLkkPievdGetyteltLReptvkDlraaqlvkegkpdadllmgaeialiarlsg..lppedlekLdlaDlarlqervagfl 82
                 +tL+ Pi+++++ ++++tL +p ++ lr+++l++ ++ ++d    a+i++++r++   l+++d+  +dl Dl +l+++v gfl
   CTQ30020.1  7 VTLENPIKRGEQVIEKITLMKPNAGTLRGVSLADVARSEVD----ALIKVLPRMTSpsLTESDVVMMDLPDLMALATKVIGFL 85
                 79**********************************99999....9*********************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 760.88
//
Query:       CTQ30021.1  [L=171]
Description: Major tail tube protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-61  207.2   0.0    1.4e-61  207.1   0.0    1.0  1  Phage_tube  Phage tail tube protein FII


Domain annotation for each model (and alignments):
>> Phage_tube  Phage tail tube protein FII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.1   0.0   7.6e-66   1.4e-61       1     166 []       4     170 ..       4     170 .. 0.97

  Alignments for each domain:
  == domain 1  score: 207.1 bits;  conditional E-value: 7.6e-66
  Phage_tube   1 prklknfnvyvdgnsylGrveevtlPkltrkteeyrggGmagevevdlggelealeleiklggl.deevlklflakgkavqlrfrgalqredtaeekav 98 
                 prklk++n + dg+sylG++e+vtlPkltrk+e+yrggGm+g++ vd+g++ +al +ei+lgg+ d ++++l+ a g ++ lr++g++qr+dt+e++av
  CTQ30021.1   4 PRKLKYLNTFLDGVSYLGVIESVTLPKLTRKLENYRGGGMSGSAPVDFGLDDDALAMEISLGGFpDDAIWSLYGAVGTGTLLRYAGSYQRDDTGETVAV 102
                 89**************************************************************555566777************************** PP

  Phage_tube  99 evvvrgrvkeidlGkakagektetkvtlavtyykltvdGkelleiDvlnmiykvnGvDllaevRkalG 166
                 ev++r +vke+d+G++k+ge+t++k++l ++yyklt++Gkel+eiDvlnmi+kvnGvD+l+++R+++G
  CTQ30021.1 103 EVETRFKVKEVDNGESKQGEDTSSKLSLVCSYYKLTMNGKELVEIDVLNMIEKVNGVDRLDQHRRNIG 170
                 *******************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1402.85
//
Query:       CTQ30022.1  [L=393]
Description: Major tail sheath protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-33  116.1   0.9    2.3e-33  115.4   0.1    1.8  2  Phage_sheath_1   Phage tail sheath protein subtilisin-like do
    6.2e-18   64.7   0.0    9.8e-18   64.1   0.0    1.3  1  Phage_sheath_1C  Phage tail sheath C-terminal domain


Domain annotation for each model (and alignments):
>> Phage_sheath_1  Phage tail sheath protein subtilisin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.44   3.9e+03      34      52 ..      65      81 ..      53     101 .. 0.55
   2 !  115.4   0.1   2.6e-37   2.3e-33       1     168 []     110     276 ..     110     276 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.44
                    HHHHHHHHHHHHHHHHCH- CS
  Phage_sheath_1 34 evatevqafakrsrenegl 52
                     +a+++qa+a+ s++   +
      CTQ30022.1 65 TLAASLQAIADQSKPV--I 81
                    5666677766644444..2 PP

  == domain 2  score: 115.4 bits;  conditional E-value: 2.6e-37
                     CT--HHHHHHHHHHGTTS--SEEE-GGGTCS-HHHHHHHHHHHHHHHHHCH-SSEEEEES-HHHHSSS.HHHHHCTTTTEEEE--EEEETTSSEE CS
  Phage_sheath_1   1 gkvtnedylaaldalegekfnlliapgddaednevatevqafakrsrenegldaiaviappgtttieqaaarakadnegiinvsstyaaldgpei 95 
                     g++t+ ++l+ ++a++g+k+++l++pg   ++ evat+++ +++      +l+a+++++++ +++i++a+ +++       n+s++++++ +p++
      CTQ30022.1 110 GNYTGLKALLTAEAVTGVKPRILGVPG--LDSLEVATALAPICQ------KLRAFGYVSAWDCQNISEAMLYRE-------NFSQRELMVIWPDF 189
                     689************************..8889***********......************************.......************** PP

                     EHH..........HHHHHHHHHHHHSTTT--STT....-B-TTEEEESSS..--HHH....HHHHHHTTEB-EEEETTTEEEES--B-S CS
  Phage_sheath_1  96 tqy..........paaawvAGlcAradveqswtarpsngevkgaldlaie..ltqee....rdllleaGintltvdagdgvrvegditt 168
                      ++           a+a+++Gl+A++d+ ++w++++sn+ v+g+++++++  ++ +e    +dll+eaG++tl+++  dg+r++g++++
      CTQ30022.1 190 LAWdttanatetaWATARALGLRAKIDQDTGWHKTLSNVGVNGVTGISASvfWDLQEsgtdADLLNEAGVTTLIRK--DGFRFWGNRCC 276
                     ************99**************************************************************..*********86 PP

>> Phage_sheath_1C  Phage tail sheath C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   1.1e-21   9.8e-18       1     104 []     277     379 ..     277     379 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 1.1e-21
                      SS-GGGGBHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHTTSB-S--STTSEEEEC.SSSSTTEEEEEEEE-BSSS CS
  Phage_sheath_1C   1 dkdedfkkievirtldllrddirstfkkkylgkklnnddgralvksalnaylkelqregaienfdnksdlevea.kntdkdrlvvkinvkpvns 93 
                      ++d+ f++ +++rt ++++d+++  +++  +++k+ ++++ +++ + +na ++e++ +g+i + +++ d++ ++  + ++++l+++++++pv++
       CTQ30022.1 277 SDDPLFLFENYTRTAQVIADTMAAGHMW--AVDKPITATLIKDIVAGINAKFREMKTAGYIVDATCWFDESANDaATLKAGKLYIDYDYTPVPP 368
                      579*************************..*******************************************9888999************** PP

                      SS-EEEEEEEE CS
  Phage_sheath_1C  94 meklyftievt 104
                      +e+l++++++t
       CTQ30022.1 369 LENLTLRQRIT 379
                      ******99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3289.33
//
Query:       CTQ30023.1  [L=385]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-48  162.7   0.0    1.1e-47  161.8   0.0    1.4  1  DUF3751        Phage tail-collar fibre protein
      4e-14   51.9   0.0    7.3e-14   51.0   0.0    1.5  1  Phage_fiber_2  Phage tail fibre repeat


Domain annotation for each model (and alignments):
>> DUF3751  Phage tail-collar fibre protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.8   0.0   1.3e-51   1.1e-47       1     150 []       1     149 [.       1     149 [. 0.99

  Alignments for each domain:
  == domain 1  score: 161.8 bits;  conditional E-value: 1.3e-51
     DUF3751   1 maekyytllTnaGeaklaaaqaagkplkltemavGdgnGslpepdesqtalvnevwraavnqlgvdpknpnqvvaelvipeevGgFtireiglfdedgt 99 
                 m++ky +l+T  Geak+a++ ++g+++++ emavGdg Gs ++pd++qt+lvne +ra +n+l+   + +n +vae+++p+evGgFtire++lfd+dg+
  CTQ30023.1   1 MNKKYESLITVSGEAKIASSVVTGEKVVFYEMAVGDGAGSAATPDKEQTSLVNECYRARLNSLKL-SDTDNIIVAEMIMPAEVGGFTIREAALFDDDGV 98 
                 999**************************************************************.799****************************** PP

     DUF3751 100 LvavanvpetyKpkleegsgneltirlilevsnaaavtlkiDptvvlatrd 150
                  +avanvp+tyKp ++egsg++++ir+ l+vs++++++l +Dp++v+at+d
  CTQ30023.1  99 CMAVANVPDTYKPLMSEGSGRSTIIRIWLTVSSTENIELIVDPSIVIATKD 149
                 ************************************************986 PP

>> Phage_fiber_2  Phage tail fibre repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   8.2e-18   7.3e-14       1      40 [.     179     218 ..     179     220 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 8.2e-18
  Phage_fiber_2   1 tltqkGivqLssatdStsetlAATpkAVKtayDkAnsals 40 
                    tl  kG+++Ls+ +dS++e++AATp+A+K a+++A +a++
     CTQ30023.1 179 TLEDKGFTRLSNDIDSDDEDKAATPRAIKLAIESAIRAAW 218
                    8999**********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2863.20
//
Query:       CTQ30024.1  [L=887]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00023   21.0   0.2    0.00085   19.2   0.2    2.0  1  End_beta_barrel  Beta barrel domain of bacteriophage endosial


Domain annotation for each model (and alignments):
>> End_beta_barrel  Beta barrel domain of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   4.7e-08   0.00085      16      71 ..     233     288 ..     224     297 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 4.7e-08
                      SSEEEEE-TT----TT-EEEEES-SSTT--EEEEEEEEEETTEEEEE-S---SS-E CS
  End_beta_barrel  16 qrvatiriedhGlfaGdfvnfsnsavtGvsGnmtvatvidkntftvttsntqdsdl 71 
                      +++ t++ e+h +  Gd   f  +   G  G m v +v+d ntf    ++t ++d 
       CTQ30024.1 233 SNYITVVCENHPFVRGDWAAFHGAKEFGYDGIMRVISVVDANTFIAESHSTMTADS 288
                      568999**************************************999888877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 6585.55
//
Query:       CTQ30025.1  [L=198]
Description: Tail protein I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-45  152.2   1.2    9.6e-45  151.8   1.2    1.1  1  Tail_P2_I        Phage tail protein (Tail_P2_I)
  ------ inclusion threshold ------
      0.038   14.1   0.1      0.064   13.4   0.1    1.3  1  Coatomer_g_Cpla  Coatomer subunit gamma-1 C-terminal appendag


Domain annotation for each model (and alignments):
>> Tail_P2_I  Phage tail protein (Tail_P2_I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.8   1.2   1.1e-48   9.6e-45       5     135 ..      10     141 ..       7     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 151.8 bits;  conditional E-value: 1.1e-48
   Tail_P2_I   5 ataleralaalaarldklpvpirdlwnpdtcpaelLpwLAwelsvdgWdeawseeakRavikeaielhrlkGTpaavrrvlealgfgveitEWweyr.k 102
                 ++ le+++a+++a +++l+vp+rdlwnp++cpa++Lp+LAw++svd+W+e+w+e akR+++++a+ +h++kGT+aavrrv+ealg+ + ++EWwe +  
  CTQ30025.1  10 SSVLEQRAAEACAVISDLSVPLRDLWNPWKCPAKFLPYLAWAFSVDRWEETWTETAKRQAVSDAFWIHQRKGTVAAVRRVIEALGYSMALREWWEVAdP 108
                 6789********************************************************************************************668 PP

   Tail_P2_I 103 pytfkvelevseqgiteeqaaelrrlvaaakpa 135
                  +tf++e+++++ gi+e++++el+r++ ++kp+
  CTQ30025.1 109 AGTFRLEVNLNNHGISETMIKELERIIGDTKPV 141
                 9*******************************8 PP

>> Coatomer_g_Cpla  Coatomer subunit gamma-1 C-terminal appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   7.1e-06     0.064       9      51 ..      54      96 ..      49     102 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.1e-06
                     -S-HHHHHHHH-STT-EEEEEEESS---HHHHHHHHHHHHT-E CS
  Coatomer_g_Cpla  9 vsnFeaaWeeleseaeavetfaLssvksleeavdkliellgmq 51
                     v  +e++W e ++ + +++ f +++ k   +av+++ie lg +
       CTQ30025.1 54 VDRWEETWTETAKRQAVSDAFWIHQRKGTVAAVRRVIEALGYS 96
                     568*************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1616.27
//
Query:       CTQ30026.1  [L=302]
Description: Baseplate assembly protein J [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-26   91.5   1.8    5.6e-26   91.2   0.5    1.8  2  Baseplate_J  Baseplate J-like protein


Domain annotation for each model (and alignments):
>> Baseplate_J  Baseplate J-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.09   1.6e+03       3      23 ..      87     106 ..      68     110 .. 0.73
   2 !   91.2   0.5   3.2e-30   5.6e-26     112     254 ..     118     261 ..     116     272 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.09
  Baseplate_J   3 eyLdrlgelevgvtRkpAtkA 23 
                  + Ld+l++   +v+R+  t+A
   CTQ30026.1  87 NDLDQLAAN-NNVERLVITPA 106
                  457777766.47777776666 PP

  == domain 2  score: 91.2 bits;  conditional E-value: 3.2e-30
  Baseplate_J 112 iEsdealreRillalqepptgGnkadYkewalev.qgVtrakvlplwngpGtVkvvilldng.glPtaellakVqayis.eglrPvtaevtvlaptek 206
                   Esd++lr+R+ +a++  + +G++ +Y+++al++   V +a   ++  +p +V +++l  +g g ++++ll +V ++++ e +rPv++++tv++++ +
   CTQ30026.1 118 MESDSDLRQRVPAAFEGMSVAGPAGAYEFHALSAdGRVADASANSP--SPAEVTIAVLSREGdGTASDDLLLAVSTALNdESVRPVGDRLTVVSAEIV 213
                  6*********************************666*********..9**********87779********************************** PP

  Baseplate_J 207 avnitatlllaegtdseavkqaveaaiqayfkeeakpggtivlsqiea 254
                  +++++a l + +g+++e + +a++a+++ay++e++  g++i++s+i a
   CTQ30026.1 214 NYSVDAVLYVYPGPATEPILAAAKAQLTAYITEQRRLGRDIRMSAIYA 261
                  *******77789*********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2316.80
//
Query:       CTQ30027.1  [L=115]
Description: Baseplate assembly protein W [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-15   56.3   0.0    2.4e-15   56.1   0.0    1.1  1  GPW_gp25  Gene 25-like lysozyme


Domain annotation for each model (and alignments):
>> GPW_gp25  Gene 25-like lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.3e-19   2.4e-15       3      93 ..      18     104 ..      16     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1.3e-19
                 HHHHHHHHHHHHHCSBTTSSTT-TT-SBGGGHHHHCS--.CHHHHHHHHHHHHHHHH-TTEEEEEEEE......CCCCTEEEEEEEEEETTC CS
    GPW_gp25   3 lresvrrdleiLLntfpgervsvlnyGlpllallfasls.edreriareireailrfEpRirlvsveveveeededargrlrieIeatlrat 93 
                   +++ +++ ++L t  g+rv++ +yG+ l ++ +++++ +   +i +++  ail++EpR+rl+s++      +++ +g++ +++++++  t
  CTQ30027.1  18 DVDHISQSIGDILRTPVGSRVMRREYGSLLSQMIDQPQTpALELQIMAACYMAILKWEPRVRLTSITT-----ERQFNGQMVVDVTGQITDT 104
                 5699****************************************************************.....3446899999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 847.37
//
Query:       CTQ30028.1  [L=211]
Description: Baseplate assembly protein V [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-46  156.0   0.1    5.4e-46  155.1   0.0    1.5  2  Phage_base_V  Type VI secretion system, phage-baseplate injec
      5e-25   87.3   6.3    2.1e-24   85.3   1.5    2.6  2  Phage_spike   Phage spike trimer


Domain annotation for each model (and alignments):
>> Phage_base_V  Type VI secretion system, phage-baseplate injector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.1   0.0     6e-50   5.4e-46       1     112 []       8     119 ..       8     119 .. 0.99
   2 ?   -3.3   0.0      0.93   8.4e+03      28      54 ..     129     155 ..     124     157 .. 0.64

  Alignments for each domain:
  == domain 1  score: 155.1 bits;  conditional E-value: 6e-50
                   TTHHHHHHHHEEEEEEEEEETTTTEEEEEETTEEXXXEEEXXSXBSSSBXXXXXXTTXEEEEEEXXTTTXXEEEEEEEXXSSSXXSXXBTS-EEEE- CS
  Phage_base_V   1 aeleRrlenlirlGvvaevdlaaarvrvktgdlltdwlrwlaarAGktrswrapsvGEqvvllspsGelatavvlpglysdafpapsnsadaevirf 97 
                   +el+R ++n+ir+G+v+e dl+a r+rv+tg++ tdwl+wl++rAG++r+w+aps+GEqv++l+++Gel+ a+vlpg+ysd++paps sada +++f
    CTQ30028.1   8 QELARAIRNMIRTGIVVETDLDAGRCRVQTGGIYTDWLQWLTHRAGRSRTWWAPSIGEQVMILAVGGELDCAFVLPGIYSDDNPAPSVSADAWHVEF 104
                   589********************************************************************************************** PP

                   TTS-EEEEETTTTEE CS
  Phage_base_V  98 pDGavieYdtaakal 112
                   pDGav++Y+++++al
    CTQ30028.1 105 PDGAVMNYEPETGAL 119
                   ************986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.93
                   EEETTEEXXXEEEXXSXBSSSBXXXXX CS
  Phage_base_V  28 vktgdlltdwlrwlaarAGktrswrap 54 
                   v+++d ++  ++++  +A +  +  +p
    CTQ30028.1 129 VTASDSVAVSVPVVLVKAETRVTLDTP 155
                   566666677777777777776666666 PP

>> Phage_spike  Phage spike trimer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.2    0.0016        14       1      20 [.     123     142 ..     123     143 .. 0.88
   2 !   85.3   1.5   2.3e-28   2.1e-24       2      54 .]     139     191 ..     138     191 .. 0.98

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0016
                  E-SEEEEE-SSEEEEESSEE CS
  Phage_spike   1 giktatvkAstsitLdtPev 20 
                  gikta v+As s+ +  P v
   CTQ30028.1 123 GIKTADVTASDSVAVSVPVV 142
                  79***********9888876 PP

  == domain 2  score: 85.3 bits;  conditional E-value: 2.3e-28
                  -SEEEEE-SSEEEEESSEEEEEEEEEEEEEEESSEEEEES-EEEESS-EEETT CS
  Phage_spike   2 iktatvkAstsitLdtPevecTgnLtvgtltvqgGGtikGdithsgGnlssnG 54 
                  ++ ++vkA+t++tLdtPev+cT++Lt+gtl+v++GG+++Gdi+hsgG++ssnG
   CTQ30028.1 139 VPVVLVKAETRVTLDTPEVVCTNKLTTGTLEVKNGGKMSGDIEHSGGSFSSNG 191
                  688*************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1502.38
//
Query:       CTQ30029.1  [L=124]
Description: Tail completion protein S [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-38  131.9   1.3    1.7e-38  131.7   1.3    1.0  1  Phage_tail_S  Phage virion morphogenesis family


Domain annotation for each model (and alignments):
>> Phage_tail_S  Phage virion morphogenesis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   1.3   9.7e-43   1.7e-38      23     147 ..       1     122 [.       1     123 [. 0.97

  Alignments for each domain:
  == domain 1  score: 131.7 bits;  conditional E-value: 9.7e-43
  Phage_tail_S  23 lmraigeeLresqeqrfeaqkdPdGspwkplkdktlaakkgkikrggkilrklgrlarslkteatsdsve...vGsnkiyAaiHQfGgkagrdrvsk 116
                   +++ i+++Lr++q+qr+++qk+PdGsp++p+k++ ++akkg+ikr+  +++kl r++r++k++ +++++    +G+++++A++HQ+G+   +d+ s+
    CTQ30029.1   1 MTADIAKKLRQRQQQRIKSQKAPDGSPFAPRKRQPVRAKKGRIKRE--MFAKL-RTNRYMKASGGDSAAVvefTGKVQRIARVHQLGL---KDKPSP 91 
                   5789******************************************..*****.***********9999999****************...8999** PP

  Phage_tail_S 117 kgkkvtipaRplLGlsdedeeeildillahL 147
                   k+ +v++p+R+lLG++++d++++++i++++L
    CTQ30029.1  92 KSAEVEYPQRQLLGFTEDDRQLVESIIIDYL 122
                   *****************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 987.29
//
Query:       CTQ30030.1  [L=155]
Description: Tail completion protein R [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-42  143.5   0.0    4.2e-42  143.3   0.0    1.0  1  P2_Phage_GpR  P2 phage tail completion protein R (GpR)


Domain annotation for each model (and alignments):
>> P2_Phage_GpR  P2 phage tail completion protein R (GpR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.3   0.0   2.3e-46   4.2e-42       1     131 []       1     130 [.       1     130 [. 0.99

  Alignments for each domain:
  == domain 1  score: 143.3 bits;  conditional E-value: 2.3e-46
  P2_Phage_GpR   1 MlKlqsLraaLtaalpelaanpeklevfvdegelvatgaqslsfeyrYtlvlviedfpgdpdalmvpvlaWlrenqpdllenpekrlagirfdvdil 97 
                   M+K++sLr+aLt+a+p+l++np++l +  d+g+ +at+a+slsfe rYtl++v++df++d+d+l+vp++aWlr nqpd+++++e r++g+++ +di+
    CTQ30030.1   1 MQKPNSLRKALTDAVPVLRTNPDMLCLRLDDGNNTATLARSLSFEKRYTLNIVVTDFTDDIDLLFVPIMAWLRVNQPDIMTTDEGRKKGFAWFADIN 97 
                   9************************************************************************************************ PP

  P2_Phage_GpR  98 dddtadlsitieltErvevkededGeitvdgvre 131
                   +d++ d+si++ ltEr+ vke  dG++ v++ +e
    CTQ30030.1  98 NDSSLDVSISLLLTERTLVKEV-DGAMYVENIPE 130
                   **********************.****9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1230.90
//
Query:       CTQ30031.1  [L=107]
Description: putative host lysis related protein from prophage [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 862.13
//
Query:       CTQ30032.1  [L=143]
Description: Protein lysB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   14.2   0.9      0.028   13.9   0.9    1.1  1  MSC       Man1-Src1p-C-terminal domain


Domain annotation for each model (and alignments):
>> MSC  Man1-Src1p-C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.9   1.6e-06     0.028     223     291 ..       3      71 ..       1      88 [. 0.78

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.6e-06
         MSC 223 llllglllllllilylrs...rlrsrraekerveelvkevlerLkkqkkkhaedpstapepylslvqLRDdv 291
                  +++ l+l+ +++l++r+   +lr++ ++++rv+   k++++ Lk+q +  ae+++++    l+ v +RD++
  CTQ30032.1   3 IVIILLALACAGLLWMRHdnsNLRASFERTNRVAGTQKTTITMLKNQLNVAAEQSQRK---ELAQVAMRDKL 71 
                 55666666777778887622268889999******************99988888654...7********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1058  (0.0590105); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1197.52
//
Query:       CTQ30033.1  [L=165]
Description: Lysozyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-19   70.6   0.0    1.7e-19   70.3   0.0    1.1  1  Phage_lysozyme  Phage lysozyme


Domain annotation for each model (and alignments):
>> Phage_lysozyme  Phage lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   9.6e-24   1.7e-19       1     109 []      34     152 ..      34     152 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 9.6e-24
                     CEEEETT.....BCSSSCCTTHH............-EHHHHHHHHHHHHHHHHHHHHHHTTSHHSSHHHHHHHHHHHHHHHHHHHHTTHHHHHHH CS
  Phage_lysozyme   1 ywtigiG.....ekgkdvsphkr............itkeeaagryekdlktaerkikqyikvkdfepnqqdalvslafnvGkgGkrkastllral 78 
                     y++i++G     e ++d+ +h++            ++k++a+gry++++ ++ ++ kq++  +df+p +qd+l+++++++     r+a+  l+++
      CTQ30033.1  34 YDVIVTGidgkpEIFTDYRDHPFaggrpakvfnrrGEKSTASGRYQQLYLFWPHYKKQLAL-PDFSPVSQDRLAIQLIRE-----RGALEDLQQG 122
                     899**********************************************************.8*****************.....89******** PP

                     HTTCHHHHHHHGGGSSEETCCCHHHHHHHHH CS
  Phage_lysozyme  79 nagdwkkacsairkslkaGkelnglknRrek 109
                     ++++++++c++i++sl+ G+++++ +++++k
      CTQ30033.1 123 RIERAISRCRNIWASLP-GAGYGQREHSLDK 152
                     *****************.*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1234.29
//
Query:       CTQ30034.1  [L=96]
Description: Holin [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-40  138.2   4.1    1.1e-40  138.0   4.1    1.0  1  Phage_holin_3_2  Phage holin family 2


Domain annotation for each model (and alignments):
>> Phage_holin_3_2  Phage holin family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   4.1   6.4e-45   1.1e-40       1      86 []       1      86 [.       1      86 [. 0.99

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 6.4e-45
  Phage_holin_3_2  1 mneaektlltLlviGalialGklLvseepitlrLfiGRvilGsavslvagvaLvqfpdlsplavvGigsalGiaGyqaieillrrr 86
                     m+e ek++l+L++iG+li++Gk+L+++epit+rLfiGR++lG++vs+vagvaLvqfpdl+p av+G+gs+lGiaGyqa+ei+++rr
       CTQ30034.1  1 MTEGEKSVLSLFLIGVLIVVGKVLAGGEPITARLFIGRMLLGGFVSMVAGVALVQFPDLPPAAVCGFGSMLGIAGYQAVEIAIQRR 86
                     89**********************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 756.05
//
Query:       CTQ30035.1  [L=67]
Description: Tail protein X [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-28   98.4   0.1    1.5e-28   98.3   0.1    1.0  1  Phage_tail_X  Phage Tail Protein X


Domain annotation for each model (and alignments):
>> Phage_tail_X  Phage Tail Protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.1   8.1e-33   1.5e-28       3      60 .]       3      60 ..       1      60 [. 0.95

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 8.1e-33
                  EEE-TT-SHHHHHHHTTS--TTTHHHHHHHSTTTTTT-S---TTEEEE-TT--SS--S CS
  Phage_tail_X  3 vyatqgdtlDalcwryYGrtlgvveavleaNPgLAelgpvLphGtavelPdistttta 60
                    a+qgdtlD++c ryYGrt+gv e vl+aNPgLAelg+vLphGt+velPd+++++++
    CTQ30035.1  3 AIAQQGDTLDMICARYYGRTEGVFESVLAANPGLAELGAVLPHGTVVELPDVQSSPVT 60
                  5688*************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       185  (0.0103185); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 538.01
//
Query:       CTQ30036.1  [L=168]
Description: Head completion/stabilization protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-50  170.7   0.0    1.8e-50  170.5   0.0    1.0  1  Phage_GPL  Phage head completion protein (GPL)


Domain annotation for each model (and alignments):
>> Phage_GPL  Phage head completion protein (GPL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.5   0.0     1e-54   1.8e-50       1     139 []      30     168 .]      30     168 .] 0.99

  Alignments for each domain:
  == domain 1  score: 170.5 bits;  conditional E-value: 1e-54
   Phage_GPL   1 itndgFfPdidladfreamrldgtvteerlraalleAiaevnaeLaawrakqqaaGyatlaavpaeeidgesvlvalYrrAVyarAkAdLleryrdidt 99 
                 i+n+ FfPdid++++re mrl++tv+++rlr+a++++iae+naeL  wr++q a G+++la+vpa+ +dgesv+v++Y rAV ++A+A+L+eryr +d+
  CTQ30036.1  30 IKNTFFFPDIDPKRVREGMRLEQTVAPARLREAIKTGIAETNAELFLWREQQIAGGFSKLADVPADDLDGESVRVFYYLRAVTSMATATLYERYRGVDA 128
                 89************************************************************************************************* PP

   Phage_GPL 100 taagekkaeelettrddllrdarwairdikgrkritveli 139
                 +a+g+kka++++tt+d+l+rd+rwa+++++ ++r++v++i
  CTQ30036.1 129 SAKGDKKADSIDTTVDELWRDMRWAVSRVQDKPRCIVSQI 168
                 *************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1471.11
//
Query:       CTQ30037.1  [L=247]
Description: Terminase, endonuclease subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-39  135.4   0.0    1.7e-39  134.8   0.0    1.3  1  Phage_term_smal  Phage small terminase subunit
  ------ inclusion threshold ------
      0.019   15.1   0.1      0.038   14.1   0.1    1.6  1  TPR_2            Tetratricopeptide repeat
       0.13   12.1   0.0       0.23   11.3   0.0    1.4  1  TPR_1            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Phage_term_smal  Phage small terminase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.8   0.0   2.8e-43   1.7e-39       1     130 []      35     164 ..      35     164 .. 0.99

  Alignments for each domain:
  == domain 1  score: 134.8 bits;  conditional E-value: 2.8e-43
  Phage_term_smal   1 laaLeedkrrLkeiqsieeKaelKrelLpkYqpwvegvlaagsgaqdevlvtvlvWliDvgdyeqALdiaeyaiahglelPdrfkrtlatvvae 94 
                      l++L++d+r+Lk+i   e Ka  KrelLp Y+pwv+gvl++g+gaqd++++tv++W++Dvgd+ +A+dia+ya + gl++P +++r   ++++e
       CTQ30037.1  35 LVKLAADQRTLKAIFGKELKATKKRELLPFYLPWVSGVLEQGKGAQDDIVMTVMLWRLDVGDIGGAMDIARYAFKYGLTMPGKHRRPPQYMFTE 128
                      689******************************************************************************************* PP

  Phage_term_smal  95 eiadaalkalkagqsvelpyLsrveklteeedlpdq 130
                      e+a aa++a++ag++v +  L ++ +lt+ +d+pd+
       CTQ30037.1 129 EVALAAMRAHAAGEPVVISQLLDTLALTAAADMPDE 164
                      **********************************96 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   6.4e-06     0.038       2      31 ..     168     197 ..     167     200 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.4e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleld 31 
                 +++   G++++ ++++++Al+++++A +ld
  CTQ30037.1 168 KLHKITGQVLRDNKQPADALAHLKRAMQLD 197
                 677778**********************98 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.9e-05      0.23       7      31 ..     173     197 ..     167     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.9e-05
                 HHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   7 lGnayfklgkydeAleyyekALeln 31 
                  G++++ ++++ +Al++ ++A +l+
  CTQ30037.1 173 TGQVLRDNKQPADALAHLKRAMQLD 197
                 599*******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1863.29
//
Query:       CTQ30038.1  [L=352]
Description: Capsid proteins [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   8.9e-144  478.4   1.7     1e-143  478.3   1.7    1.0  1  Phage_cap_P2  Phage major capsid protein, P2 family


Domain annotation for each model (and alignments):
>> Phage_cap_P2  Phage major capsid protein, P2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  478.3   1.7  5.6e-148    1e-143       1     326 []       8     340 ..       8     340 .. 0.99

  Alignments for each domain:
  == domain 1  score: 478.3 bits;  conditional E-value: 5.6e-148
  Phage_cap_P2   1 kfnaylarlaklngveseevsekFsvepsveqkLeekiqessefLkkInvvgVdeqkGekvglgvsgliasrtdts.kkeRktkdvtkldsnkYele 96 
                   kfnayl+r+a+lng++ ++vs+kF+vepsv+q++++++q ss+fL+kIn+v+Vde+kGek+g+gv+g+ias+tdt+ ++eRkt+d+t+l+s+kYe++
    CTQ30038.1   8 KFNAYLSRVAELNGIDPADVSKKFNVEPSVTQTMMNTVQMSSAFLQKINIVPVDELKGEKIGVGVNGTIASTTDTNsGQERKTADFTALESKKYECD 104
                   69**************************************************************************9******************** PP

  Phage_cap_P2  97 ktnsdtaikYakldawakfkdfqkrlreaiakrialdrimiGfnGtsvaattdraanpllqDVnkGWlqklreeapervltegkkes......kivi 187
                   ++n+d++ kY+kld wa+f+dfq+r+r+ai++r+ald im GfnG+++a+t+draa+p+lqDV++GW qk+r+eap+rv++++ +e+       i++
    CTQ30038.1 105 QVNFDFHFKYKKLDLWARFQDFQRRIRDAIIQRQALDFIMAGFNGVERAETSDRAAHPMLQDVAVGWPQKYRNEAPTRVMSKIVDEEgnvvsaVIRV 201
                   **********************************************************************************9999999**999*** PP

  Phage_cap_P2 188 geggdyknLDalvfdavnslideeyredtdLVvlvGrdLladkkfkllnktntekeklaaqliisqkrigglpavrvPffPakallvTsldNLsiYt 284
                   g++gdy nLDalv+da+++lide y+ed++LV++vGr+Lladk+f+++nk+++++e+laa++iisqkrig+lpavrvP+fPa+a++vT+ldNLsiY+
    CTQ30038.1 202 GKNGDYVNLDALVMDATDNLIDEIYQEDSELVAIVGRKLLADKYFPIVNKDQPNSEALAADIIISQKRIGNLPAVRVPYFPANAIMVTRLDNLSIYF 298
                   ************************************************************************************************* PP

  Phage_cap_P2 285 qegsrrrkiednpkrdrienyessnegYvvedyelaalieni 326
                   +++s+rr+i++npk d++enyes+n +Yvve+y ++++ieni
    CTQ30038.1 299 MDESHRRSIIENPKLDQVENYESMNIDYVVETYAAGCFIENI 340
                   ****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2678.55
//
Query:       CTQ30039.1  [L=284]
Description: Presumed capsid-scaffolding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.3e-106  354.5   0.2   4.9e-106  354.3   0.2    1.0  1  Phage_GPO       Phage capsid scaffolding protein (GPO) serine
  ------ inclusion threshold ------
      0.012   15.8   0.9      0.025   14.7   0.9    1.5  1  COG5            Golgi transport complex subunit 5
      0.018   14.9   5.0       0.03   14.2   5.0    1.3  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
      0.018   15.0   5.3      0.083   12.9   4.8    2.0  2  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
      0.033   13.6   2.1       0.05   13.0   2.1    1.2  1  Rab5-bind       Rabaptin-like protein
      0.036   14.1   5.4      0.055   13.5   5.4    1.2  1  Cep57_CLD       Centrosome localisation domain of Cep57
      0.094   12.6   1.6       0.14   12.0   1.6    1.2  1  PIN_8           PIN like domain
       0.34   11.2   2.3       0.63   10.3   1.1    2.0  2  ABC_tran_CTD    ABC transporter C-terminal domain
          1   10.2   4.0        1.1   10.1   0.7    2.1  2  TORC_N          Transducer of regulated CREB activity, N term


Domain annotation for each model (and alignments):
>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.3   0.2  2.4e-109  4.9e-106       1     272 []       6     284 .]       6     284 .] 0.95

  Alignments for each domain:
  == domain 1  score: 354.3 bits;  conditional E-value: 2.4e-109
   Phage_GPO   1 skffrvaveGaTtdGreierewleqmaanYdpkvYgArinleHlksllpdstfkaygdvlalkaeeie.dgplkgklaLyaeidptddLvalnkkrqKv 98 
                 sk+fr++veG+T+dGr+i+  ++++ma+++dp+vYg+rinleHlk++lpd++f +ygdv +lk+e+i+ d+ lkgklaL+a+i+ptddL+a+nkk qKv
  CTQ30039.1   6 SKWFRIGVEGDTCDGRVISATDIQEMAETFDPRVYGCRINLEHLKGILPDGPFSRYGDVVELKSEKIDdDSVLKGKLALFAKITPTDDLIAMNKKLQKV 104
                 8*******************************************************************8999*************************** PP

   Phage_GPO  99 ytSieinpkfadtgkAYLvGLAvTDsPAsLGtemLefaakakanplakrkqspenlftaavetalefeeeeeeeegeslferikallskkkksddarfa 197
                 ytS+ei+p+fa++gk+YLvGLAvTD+PAsLGte+Lef++ ak npl++ k +p nl+++a+ ++lefe+++e+   ++l +++ka++s+k++sddarf+
  CTQ30039.1 105 YTSMEIQPNFANSGKCYLVGLAVTDDPASLGTEYLEFCRGAKFNPLNRFKAEPGNLISVATLAELEFEDQAENVF-TALSDKVKAIFSRKQASDDARFQ 202
                 ***********************************************************************9998.*********************** PP

   Phage_GPO 198 dveeavelvAeevkelsekveall.aleaelaalkkeveklka....eleaLkekLsktda.kekqrpeatG.eegevltdc 272
                 dv+eav++v e+v+e  +++e++l +le+++a+lk++v+++++    ++++Lk++L++t++ ++ +r+ +tG +++e+ltdc
  CTQ30039.1 203 DVHEAVTTVSEHVQENLTATEKRLaTLENAFATLKQDVTTKADqtsqAFSQLKTSLDTTEStTQPRRKLSTGgGGDELLTDC 284
                 *******************99988766777777777665543333339*************88899999**9889999***9 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.9   1.3e-05     0.025      65     117 ..     210     262 ..     191     267 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHHHHHHHHH CS
        COG5  65 skskslssvlselksslesLsasyerlkskvlepyeeaeklqsalkrlhqtld 117
                 + s++ ++ l+  +++l+ L++++  lk++v+++ ++ ++  s+lk+  +t++
  CTQ30039.1 210 TVSEHVQENLTATEKRLATLENAFATLKQDVTTKADQTSQAFSQLKTSLDTTE 262
                 44667777***************************************999986 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   5.0   1.5e-05      0.03     103     183 ..     170     256 ..     156     266 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.5e-05
                     HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-----..---...--SSSHHHHHHHTS-TTSHHHHHS--XXXX...XXXX CS
  Apolipoprotein 103 elrerlerhvealkarlapyveelrqklaerleelkeslaphaeeve...erlssrveelrekleeqaeelrerleanle...elka 183
                     e+++++e    al +++++++ + +++ ++r ++++e +++ +e v+   ++ ++r+  l+ ++++  ++++ ++++ ++   +lk 
      CTQ30039.1 170 EFEDQAENVFTALSDKVKAIFSRKQASDDARFQDVHEAVTTVSEHVQenlTATEKRLATLENAFATLKQDVTTKADQTSQafsQLKT 256
                     567788888889999999999999999999999999999999999994444445666777777777777777777777775555555 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   4.8   4.2e-05     0.083      40     105 ..     172     237 ..     159     263 .. 0.80
   2 ?    2.9   0.5     0.051     1e+02      44      77 ..     230     263 ..     229     272 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
  Baculo_PEP_C  40 ldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNin 105
                    d+ e++++als+++k+  +  ++  d+ ++ +++a+ ++++ ++++Lt++++ l++L +  + ++
    CTQ30039.1 172 EDQAENVFTALSDKVKAIFSRKQASDDARFQDVHEAVTTVSEHVQENLTATEKRLATLENAFATLK 237
                   477889999999999999999999999999999999999999999999999999999997666554 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.051
  Baculo_PEP_C  44 etqLnalsedlksllaeldtrldtlltnLtdaln 77 
                   e+ + +l++d++    + ++++++l t L+++  
    CTQ30039.1 230 ENAFATLKQDVTTKADQTSQAFSQLKTSLDTTES 263
                   5666777777777777777777777777777654 PP

>> Rab5-bind  Rabaptin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.1   2.5e-05      0.05      46     132 ..     168     255 ..     155     267 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.5e-05
   Rab5-bind  46 kkeLedslkelseetskqvselakrvkksE.llleeLqqafskakrniqeqlavlvksreqvedelvrLqkdyesLlGkhrkhvslle 132
                   e ed+ +++ +  s++v+++ +r ++s+ ++++++++a +   +++qe+l+   k++  +e+ + +L++d      ++++  s+l+
  CTQ30039.1 168 ELEFEDQAENVFTALSDKVKAIFSRKQASDdARFQDVHEAVTTVSEHVQENLTATEKRLATLENAFATLKQDVTTKADQTSQAFSQLK 255
                 55889999999999***********99995389**************************************99988888888877765 PP

>> Cep57_CLD  Centrosome localisation domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   5.4   2.8e-05     0.055      15     112 ..     168     266 ..     164     273 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.8e-05
   Cep57_CLD  15 rLELersqAeknlkslskeaskykkvlqe.eseekekekseeskqnqelesqLaaaesrcslLEkqLeymrkmves.aekerkavlekqaslekekkqe 111
                  LE+e  qAe+ +++ls++++   +  q+ ++ + ++ +++ ++ +++++++L+a+e+r   LE  +  +++ v++ a++  +a  + ++sl++ +++ 
  CTQ30039.1 168 ELEFE-DQAENVFTALSDKVKAIFSRKQAsDDARFQDVHEAVTTVSEHVQENLTATEKRLATLENAFATLKQDVTTkADQTSQAFSQLKTSLDTTESTT 265
                 56666.69***********99665555440444556667788899999***********************9887514455555555566666666443 PP

   Cep57_CLD 112 s 112
                 +
  CTQ30039.1 266 Q 266
                 3 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.6   6.8e-05      0.14      33     126 ..     160     256 ..     137     269 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.8e-05
       PIN_8  33 rlwvPhqvalEfqrnresviskekkayedlekeleklkkaaekkleeal...kkwakkkaldteelrkelkkqleelkeelkaeleelkksskadke 126
                  + v   + lEf  + e+v+   +++++ + +  ++  +a+ ++++ea+   +++ +++ ++te+  + l++++++lk+++ +++++ ++++++ k+
  CTQ30039.1 160 LISVATLAELEFEDQAENVFTALSDKVKAIFSRKQASDDARFQDVHEAVttvSEHVQENLTATEKRLATLENAFATLKQDVTTKADQTSQAFSQLKT 256
                 6778888999*********99999999998866655555555555555500045555555669999999************8888888887776654 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.73   1.4e+03      37      55 ..     195     213 ..     167     220 .. 0.65
   2 ?   10.3   1.1   0.00032      0.63      11      61 ..     213     262 ..     211     264 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.73
  ABC_tran_CTD  37 ysdpeklaelsaeleelea 55 
                    sd+++++++++  +++ +
    CTQ30039.1 195 ASDDARFQDVHEAVTTVSE 213
                   3666677777766665555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00032
  ABC_tran_CTD  11 eeleaeIeaLEeeiaeleaeladpelysdp.eklaelsaeleeleaeLeely 61 
                   e++ + + a E+++a+le+++a     +d  +k  ++s+   +l++ L++ +
    CTQ30039.1 213 EHVQENLTATEKRLATLENAFATLK--QDVtTKADQTSQAFSQLKTSLDTTE 262
                   5677888999999999999999666..8989999999999999999999876 PP

>> TORC_N  Transducer of regulated CREB activity, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.7   0.00054       1.1       8      43 ..     185     221 ..     182     238 .. 0.75
   2 ?    0.6   0.4      0.51     1e+03      21      57 ..     231     272 ..     222     279 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00054
      TORC_N   8 KI.AlhnqKqaEetaaFekimrevsaatrketqssna 43 
                 K+ A+  +Kqa + a F+++ + v+   ++ ++   a
  CTQ30039.1 185 KVkAIFSRKQASDDARFQDVHEAVTTVSEHVQENLTA 221
                 55599****************9998877665554433 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.51
      TORC_N  21 aaFekimrevsaatrketqssnak......saaalaiPkqqlr 57 
                 +aF  + ++v+    +++q + ++      +++++++P+++l+
  CTQ30039.1 231 NAFATLKQDVTTKADQTSQ-AFSQlktsldTTESTTQPRRKLS 272
                 6788888888754444333.33333466666666677776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1531  (0.0853924); expected 358.6 (0.02)
Passed bias filter:                      876  (0.0488594); expected 358.6 (0.02)
Passed Vit filter:                       152  (0.00847788); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 2159.26
//
Query:       CTQ30040.1  [L=589]
Description: Terminase, ATPase subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-57  193.6   0.0    6.1e-57  192.7   0.0    1.5  1  Terminase_6      Terminase-like family
    2.6e-41  141.3   0.1    1.4e-40  138.9   0.0    2.2  2  Terminase_6C     Terminase RNaseH-like domain
      3e-25   87.9   1.3    3.7e-25   87.6   0.3    1.7  2  Terminase_5      Putative ATPase subunit of terminase (gpP-li
    4.7e-06   26.2   0.0    1.2e-05   24.9   0.0    1.6  1  HTH_23           Homeodomain-like domain
    1.7e-05   24.8   0.9    5.9e-05   23.1   0.2    2.2  2  HTH_28           Helix-turn-helix domain
    6.2e-05   22.9   0.0    0.00013   21.9   0.0    1.6  1  HTH_29           Winged helix-turn helix
    0.00012   21.6   0.0    0.00044   19.9   0.0    2.0  1  Sigma70_r4_2     Sigma-70, region 4
      0.002   18.1   0.0     0.0041   17.1   0.0    1.5  1  Phage_terminase  Phage terminase small subunit


Domain annotation for each model (and alignments):
>> Terminase_6  Terminase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.7   0.0   2.7e-60   6.1e-57       2     214 ..     164     385 ..     163     386 .. 0.95

  Alignments for each domain:
  == domain 1  score: 192.7 bits;  conditional E-value: 2.7e-60
                  EEE-SSS-HHHHHHHHHHHHHHSSSS.-EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEEE.TTS-EEEEES....SHHHHHTS--S CS
  Terminase_6   2 ilggrqsGKTfagarellrhalgrgprnqvflsasktqareeggqfekgigelakeildiefeesaknlvvl.snGaslhflslesetaggiqGaqid 98 
                  il++rq+G+Tf+++re+l hal++g  nq+flsasktqa++    f+++i+++a+  +d++++   ++++v+ +nGa+l+fl+++s+ta++++G    
   CTQ30040.1 164 ILKSRQIGATFYFSREALLHALKTGH-NQIFLSASKTQAYV----FREYIIQFARR-VDVDLT---GDPIVIgNNGAKLIFLGTNSNTAQSHNG---- 248
                  79***********************6.**************....***********.******...****************************.... PP

                  EEEEESGGGSTTHHHHHHHHHHHHCSTT--EEEEEE---SSSHHHHHHHHHHCTSS...-EEEEE-GGGSG..................B-TTSBB-T CS
  Terminase_6  99 liyfDElteipksqelekvtrlratkgtdtktfattpptpdhgvydfvtgwldeeg...pqsvtkiqavve..................vtiedakkl 175
                   +y+DE+++ip++q+l+kv++++a++++ + t+++tp+t +hg+y+f++g+l+++g       +++ ++++                  vtieda ++
   CTQ30040.1 249 DLYVDEIFWIPNFQKLRKVSSGMASQSHLRSTYFSTPSTLAHGAYPFWSGELFNRGrasA--SERVDIDIShdalaagvacpdgqwrqiVTIEDALAG 344
                  ********************************************************5333..34566666677************************* PP

                  THHHH..HHHHHTS-HHHHHHHHS---TTCTCESSXCHHHC CS
  Terminase_6 176 gedli..eeleaeysveerarllrGewidtsgsiFqrsele 214
                  g+ l+  e+l++e+sv+++ +l+++e++d+++s+F++++l+
   CTQ30040.1 345 GCTLFnlEQLKRENSVDDFSNLFMCEFVDDKASVFPFEDLQ 385
                  **************************************998 PP

>> Terminase_6C  Terminase RNaseH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.85   1.9e+03      41      99 ..      62     124 ..      56     135 .. 0.78
   2 !  138.9   0.0   6.3e-44   1.4e-40       1     154 [.     413     571 ..     413     572 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.85
                   CHHHHHHHHHHCTTCEEEEECCSCHHHHHHHHHHCCT--S-....SCEESSH..HHHHHHHHH CS
  Terminase_6C  41 lqaaaikklaerynviyvyieitsaGesvaellkrdlesea....lavkpepaskdkatrvsk 99 
                   +++a+++ l+ + n +  + + ++ + +++e ++r +++      ++++p+ a+++k +r ++
    CTQ30040.1  62 TLEARLIQLYAKPNLTPHDFKVADFLARQMERFARINRYGQtgneVDLNPNVANRNKGDRKKP 124
                   566677777778888888888888888899988888887668888999999999999888666 PP

  == domain 2  score: 138.9 bits;  conditional E-value: 6.3e-44
                   EEEE--SSCTTBEEEEEEE...ETTTTCEEEEEEEEESSS-CCCHHHHHHHHHHCTTCEEEEECCSCHHHHHHHHHHCCT--S-SCEESSH..HHHH CS
  Terminase_6C   1 igvDpaegrggDyaalvvi...dvkddkfellavlherglspalqaaaikklaerynviyvyieitsaGesvaellkrdlesealavkpepaskdka 94 
                   +g+Dp+  ++gD+a++vv+    v+++kf++l++++++g+++a+qa++i+ l+e+ynv y++i++t+ G +v +l++++ + +a +++++p  + k+
    CTQ30040.1 413 VGYDPS--HSGDSAGCVVLappVVAGGKFRILERHQWKGMDFATQAESIRQLTEKYNVEYIGIDATGLGIGVFQLVRSFYP-AARDIRYTP--EMKT 504
                   59****..************************************************************************9.88*******..**** PP

                   HHHHHHHHHHHTTSEEEETHH.CECCCCCCHCC-EEHCC......HHCHCSGCCTCHHHHHHHHHHT CS
  Terminase_6C  95 trvskvkdliesgrlkvdkga.ecaksfealegfhtdlg......aerstsaehdDlvdAlsyalla 154
                   ++v+k kd+i+ g l++d +a ++++sf+a+++++t +g      a+r+++a+h+D+++A+++all+
    CTQ30040.1 505 AMVLKAKDVIRRGCLEYDVSAtDITTSFMAIRKTMTSSGrsatyeASRTEEASHADVAWATMHALLN 571
                   *****************************************************************98 PP

>> Terminase_5  Putative ATPase subunit of terminase (gpP-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.3   1.6e-28   3.7e-25       1      58 []      12      69 ..      12      69 .. 0.99
   2 ?   -3.7   0.0       5.4   1.2e+04      36      47 ..     444     455 ..     443     458 .. 0.72

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 1.6e-28
  Terminase_5  1 dvRrqArlLYwqGyrvaeIAeelglkeatVysWkkrdewddldplsrveeaieaRlvt 58
                 d+RrqA+lLYwqG++v++IAe+l+ k+ tV+sWk+rd+wd+++pl+rve+++eaRl++
   CTQ30040.1 12 DPRRQAALLYWQGFSVPQIAEMLQTKRPTVQSWKQRDQWDETAPLNRVESTLEARLIQ 69
                 79******************************************************97 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.4
  Terminase_5  36 rdewddldplsr 47 
                  r +w+++d  ++
   CTQ30040.1 444 RHQWKGMDFATQ 455
                  889999986555 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   5.5e-09   1.2e-05       7      40 ..      14      47 ..      12      53 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 5.5e-09
      HTH_23  7 RlrillllaeGlsvreIAreLgvsrrTvyrwlkr 40
                R +++ll+ +G sv++IA++L   r Tv+ w++r
  CTQ30040.1 14 RRQAALLYWQGFSVPQIAEMLQTKRPTVQSWKQR 47
                789999*************************998 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.2   2.6e-08   5.9e-05       2      35 ..      14      47 ..      14      50 .. 0.97
   2 ?   -1.8   0.0       1.6   3.5e+03      33      46 ..      97     111 ..      96     123 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 2.6e-08
      HTH_28  2 RleiikllaaGhsvreaArelgisrrtvyrWikr 35
                R+++ +l+++G sv+++A+ l++ r tv++W +r
  CTQ30040.1 14 RRQAALLYWQGFSVPQIAEMLQTKRPTVQSWKQR 47
                899*****************************98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.6
      HTH_28  33 ikryeegGia.gLvp 46 
                 i+ry + G + +L+p
  CTQ30040.1  97 INRYGQTGNEvDLNP 111
                 89****997658888 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   5.8e-08   0.00013       1      51 [.      14      62 ..      14      69 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 5.8e-08
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsg 51
                R qa ll+ +G s v qiA++l+  r+tv+ w+ r +++ + a l+r +s 
  CTQ30040.1 14 RRQAALLYWQGFS-VPQIAEMLQTKRPTVQSWKQR-DQWDETAPLNRVEST 62
                88999*******8.*********************.999988888887765 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     2e-07   0.00044      15      49 ..      14      47 ..       9      47 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2e-07
                  HHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHH CS
  Sigma70_r4_2 15 qreifllryleglsykEIAellgisegtVksrlsR 49
                  +r++ ll y++g+s  +IAe+l ++  tV+s+ +R
    CTQ30040.1 14 RRQAALL-YWQGFSVPQIAEMLQTKRPTVQSWKQR 47
                  5566666.8***********************988 PP

>> Phage_terminase  Phage terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.8e-06    0.0041      25      51 ..      27      53 ..      11      66 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.8e-06
  Phage_terminase 25 lkdIAkvLdvsestvrkWKakDkWdek 51
                     + +IA++L+    tv+ WK +D+Wde 
       CTQ30040.1 27 VPQIAEMLQTKRPTVQSWKQRDQWDET 53
                     558**********************93 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4195.66
//
Query:       CTQ30041.1  [L=347]
Description: Presumed portal vertex protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-11   42.0   0.0    9.1e-11   41.5   0.0    1.1  1  Phage_portal    Phage portal protein
  ------ inclusion threshold ------
      0.054   13.1   0.0        0.1   12.2   0.0    1.4  1  Ribosomal_L9_N  Ribosomal protein L9, N-terminal domain


Domain annotation for each model (and alignments):
>> Phage_portal  Phage portal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0     1e-14   9.1e-11      47     263 ..      97     325 ..      89     342 .. 0.78

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1e-14
  Phage_portal  47 tayeflealvanlllygnayalivrdgr.rvvelyplppdrvt...grleydytddggg..vlpaddvlhirglpl.d..lkGlspleaareaiela 134
                   ++++f  +++ + l+ gna+ +  ++ + r+ +l++ p++ ++    + +y +  ++++   + +  v+h+   p+ +  l+G++    a ++  l+
    CTQ30041.1  97 SQQDF-SRFALDFLVFGNAFLELRKSVTgRPLKLEASPAKYTRrgiEDDVYWWVPSFDQphPFAPGSVFHLL-EPDiNqeLYGMPEYLSALNSAWLN 191
                   55554.4578999***********8855699999999999888999445555555555569779******98.5554578******99********* PP

  Phage_portal 135 laaeeyaakffkngarpsgilkikapgklseeqreklkeefeeaysgasnagk......vavleggldykpl.slspkdaqflesrkfaaeeIaraf 224
                   +aa  + +k ++nga+ + i  ++ +++ s    e l+++++ + +g + + k      +   ++g+++ pl  + +kd +f +++k +a +   a 
    CTQ30041.1 192 EAATLFRRKYYQNGAHAGYIMYVTDAAQ-SGTDVEALRDAMR-SSKGLG-NFKnlffyaPHGKPDGIKIVPLsEVATKD-DFFNIKKVSAADLLDAH 284
                   *********************5555533.3333577888887.344444.3343555556667899******5555555.***************** PP

  Phage_portal 225 gvpphllgd.lg.kstysnieeanlafyentlepllkrieq 263
                   ++p +l+g  ++  ++  +ie+  + f++n l pl  r+ +
    CTQ30041.1 285 RIPFQLMGGkPEnVGSLGDIEKVAKVFVRNELIPLQDRMRE 325
                   *******7656625555******************998865 PP

>> Ribosomal_L9_N  Ribosomal protein L9, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.1e-05       0.1      10      32 ..     296     318 ..     294     320 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.1e-05
                     TTTBSSS-EEE--HHHHHHTTTT CS
  Ribosomal_L9_N  10 kglGkkGdvveVkdGyaRNyLip 32 
                     +++G  Gd+ +V++ + RN Lip
      CTQ30041.1 296 ENVGSLGDIEKVAKVFVRNELIP 318
                     699*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       229  (0.0127726); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2609.14
//
Query:       CTQ30042.1  [L=294]
Description: D12 class N6 adenine-specific DNA methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-17   62.0   1.9    1.4e-16   61.0   1.9    1.4  1  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran


Domain annotation for each model (and alignments):
>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   1.9   7.6e-21   1.4e-16       1     247 [.       9     253 ..       9     262 .. 0.78

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 7.6e-21
                      STTTSCTTHHHHHCCS-....--SEEEETT-TTSCCHHCS.....SSCEEEEES-HHHHHHHHHHCCHSHHHHHHHHH.TCTTGGC.TSHHHHH CS
  MethyltransfD12   1 YiGgKrkllpeIkelipkd..kgktfvepFaGggaVffeakk..qgkkvlinDinedlinlykaliknnveelikelekllekeelenereyfy 90 
                      Y+GgK kl  ++k++i+++  ++  ++ep aGg+ V++e++    + k++inD  + +++++  +i + ++ l k + +++       + e+  
       CTQ30042.1   9 YPGGKGKLSYFLKDVIEQNslNDGAYAEPYAGGAGVALELLLeeYVRKIYINDADFAVYSFWSSVIDD-TDNLCKLISSAKI------NMEEWC 95 
                      99*******************99****************988667889*******************8.****999997554......466677 PP

                      HHH......HHHH...HHH-HHHHHHHHHHHHCCBGGG---B-TTS-B---B-S-SS-....HHHHHHHHHHHHH.............CCEEEC CS
  MethyltransfD12  91 elr......eefnkkidaireaeeaidflylnrllfsglervnkkgnfnvpygaykkpkkvaekelklrseklkn.............akiecg 165
                      ++r      +e       ++  +   + ++lnr+  sg+  +   g  ++ ++ + +  ++++ +l +r e++ n             +  ++ 
       CTQ30042.1  96 FHRyvisnpSE------FTKLEIG-FSAFFLNRTNRSGILKAGVIGGKAQSGKWKMDV-RFNRCDLISRIENIANynqrivvtnldalDFLDAL 181
                      77753321333......3344455.66779*********9998887666555444433.44444444444444444433443556667677888 PP

                      -CHHHHTT--TTE.EEEE--S-T.S...TS--GGGG.CS-HHHHHHHHHHHHHH.HHTT-EEEEEEESEESHHHHHHCTT.. CS
  MethyltransfD12 166 dfdavllkakieddivYlDPPYnprqytanytlyetlafsdedevrlaevlkslsskfgvkvllsnsfkdtklfrelyksYn 247
                      +f +   ka++ + ++YlDPPY       +  +++ +  + +d+v   e l++++     k+l+s++  ++k+++++y+ + 
       CTQ30042.1 182 NFMDSVGKADKNKTLLYLDPPYYI-----KGQGLYRNFYEHDDHVLVMEKLRDIN---FPKWLVSYD--NAKEIKDIYSGFP 253
                      99999999988888*********8.....88899999999999999999999998...99*******..*********9954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2209.90
//
Query:       CTQ30043.1  [L=499]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.013   15.8   0.0      0.026   14.8   0.0    1.5  1  ParBc     ParB-like nuclease domain


Domain annotation for each model (and alignments):
>> ParBc  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.4e-06     0.026      18      65 ..      37      89 ..      21     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.4e-06
       ParBc 18 d.spekieelvasIkkkGll..qPiivrktr..qgryeiiaGerRlrAakrlg 65
                + + ++i  l++ I ++Gl   ++i+v + +  +g + +  G rR++A+k+l 
  CTQ30043.1 37 ElQYDRIYRLAKDIVARGLDpsENILVYPSEeeDGFFVVAEGNRRVTALKLLL 89
                25689999***********9888*********99****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3576.91
//
Query:       CTQ30044.1  [L=173]
Description: SOS operon TUM protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-20   72.4   1.4    2.1e-19   69.6   0.2    2.2  2  DinI      DinI-like family


Domain annotation for each model (and alignments):
>> DinI  DinI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.02   3.5e+02      27      54 ..      38      67 ..      33      69 .. 0.77
   2 !   69.6   0.2   1.2e-23   2.1e-19       2      63 .]     112     173 .]     111     173 .] 0.97

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.02
                EEEESS.-EEEEES.--HHHHHHHHHHHHH CS
        DinI 27 vrkasa.nglsveG.askedkeriseiLQe 54
                + + ++   l++eG  ++ d+e+  +++ e
  CTQ30044.1 38 IERVEMiARLTTEGvCQERDREIALNLIAE 67
                5555555789************99888766 PP

  == domain 2  score: 69.6 bits;  conditional E-value: 1.2e-23
                 TTHHHHHHHHHHHHHHHH-SS-EEEEEEESS-EEEEES.--HHHHHHHHHHHHHHHHTHHHH- CS
        DinI   2 agaiealeaELskRiqevfPdaevrvrkasanglsveG.askedkeriseiLQetwesADdWl 63 
                 +++i+a+++EL++R+q+ fP ++++v+k+s++g+++ G ++++d+e+++ iLQe+we+ ++W+
  CTQ30044.1 112 QQVIDAFQNELTRRVQSIFPTTRITVKKGSMTGVELVGfDQESDREALDGILQEVWED-ESWR 173
                 689*******************************************************.***6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1271.87
//
Query:       CTQ30045.1  [L=741]
Description: Replication gene A protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     5e-129  430.0   0.1   6.7e-129  429.5   0.1    1.2  1  Phage_GPA  Bacteriophage replication gene A protein (GPA)


Domain annotation for each model (and alignments):
>> Phage_GPA  Bacteriophage replication gene A protein (GPA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.5   0.1  3.7e-133  6.7e-129       2     318 .]     141     455 ..     140     455 .. 0.99

  Alignments for each domain:
  == domain 1  score: 429.5 bits;  conditional E-value: 3.7e-133
   Phage_GPA   2 elkklakeiakalestleklsdgkkakeeedteeelakayevlaqlalsftikaPky...rkkkitaeelesaiaRltcekwwlrklkkvrkrwreela 97 
                 +++ la+++a+ ++s l++++d     ++ ++ ++l+++y++++ ++l+f++++P++   +kk++ ++e++++i+R+++e ww+ +l++++++wre+l+
  CTQ30045.1 141 DIDLLAADVANFIRSELADIDD-----TGFSELKTLYTWYMRAGLISLQFNVTPPHWervTKKYVGEDEIAPSITRMFNEVWWRGRLRRIAAAWREHLQ 234
                 67889****************9.....9999****************************99************************************** PP

   Phage_GPA  98 iavgeVskkaspyaskealkeireqkrknleflkslelededgetidLeevvkksvsNPaiRraelmvrlrgleriaeekGdvavFlTlTapskyhaty 196
                 iavg+Vskk+++yask++++++reqkr+++eflk l+lededg++i+L+e++++sv+NPaiRr+elm r+rg+e+i++e G+v+ F+TlTapskyhat+
  CTQ30045.1 235 IAVGNVSKKRHAYASKNCVTDWREQKRRTREFLKGLDLEDEDGNRISLIEKYDGSVANPAIRRCELMTRIRGFENICNELGYVGEFYTLTAPSKYHATT 333
                 *************************************************************************************************** PP

   Phage_GPA 197 kngkgnskwngatprdaqdYlvkvwavlraelnkaeirvyGvrvaephhDGtlHwHlllfvrpederqinsllrtyAlredrdelsrkgakkvrfkaek 295
                 k+g++nskwng +p+d+q+Yl+ +wa++ra+l+++eir++G+rvaephhDGt+HwH+l+f++ped ++++ ++r+yA++edr+el++++akk+rf+ae+
  CTQ30045.1 334 KAGYRNSKWNGSSPSDTQSYLTGLWARIRAKLHREEIRIFGIRVAEPHHDGTPHWHMLMFMLPEDVERVRLIIRDYAWEEDRHELRSDKAKKARFHAEA 432
                 *************************************************************************************************** PP

   Phage_GPA 296 idatkgsAvgYvAkYisKniDgr 318
                 id++kgsA+gYvAkYisKniDg+
  CTQ30045.1 433 IDPEKGSATGYVAKYISKNIDGY 455
                 *********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 5443.04
//
Query:       CTQ30046.1  [L=93]
Description: Predicted phage protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-20   73.2   0.0    1.9e-20   72.6   0.0    1.3  1  DUF3850   Domain of unknown function (DUF3850)
     0.0036   17.9   0.0     0.0038   17.8   0.0    1.2  1  ASCH      ASCH domain


Domain annotation for each model (and alignments):
>> DUF3850  Domain of unknown function (DUF3850)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   2.2e-24   1.9e-20       1      77 []       4      83 ..       4      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 2.2e-24
     DUF3850  1 theLkilpeyfeaVvsGkKtfeirknDrdyqvGDlLvLkeidee.....dgeytGreveveityvlegeklglkegYvvLgi 77
                th+Lki pe+f+aV++G+K+ e+r  Dr + vGDlL+L+e+ +      + ++tG +v v +t+v++ +  + ++gYv+L+i
  CTQ30046.1  4 THQLKIRPEFFQAVINGTKKAEFRLADRAFAVGDLLCLNEYGPCeyepqKVGFTGAFVYVLVTHVADLN--EWAPGYVMLSI 83
                7*************************************9987767777799**************7755..79*******98 PP

>> ASCH  ASCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.3e-07    0.0038       1      40 [.       7      44 ..       7      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.3e-07
                EEE-TTHHHHHHTTS--EEEESSTTTGGGT-CEEEEEECC CS
        ASCH  1 lsfhqelaslivsGkKtaeirvwdeelpkvrgdllilaal 40
                l++++e+++++++G+K+ae r  d+ +    gdll l++ 
  CTQ30046.1  7 LKIRPEFFQAVINGTKKAEFRLADRAFAV--GDLLCLNEY 44
                67899*********************998..999988554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 688.32
//
Query:       CTQ30047.1  [L=90]
Description: Uncharacterized 10.4 kDa protein in GpA 5'region [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-15   57.3   0.0    1.5e-15   57.2   0.0    1.0  1  DUF5405   Domain of unknown function (DUF5405)
  ------ inclusion threshold ------
       0.14   11.5   0.6         12    5.3   0.1    2.4  2  SeqA_N    SeqA protein N-terminal domain


Domain annotation for each model (and alignments):
>> DUF5405  Domain of unknown function (DUF5405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   1.7e-19   1.5e-15       2      85 ..       6      87 ..       5      90 .] 0.91

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 1.7e-19
     DUF5405  2 npanevvitetryqfaLievkl.dkedgareel.sviavYdsevvlvadlVselvkrevfrkqvksitellaeteriaklCetale 85
                +++ + +i +++yqf+L e+k+   + +a+ee+ ++i++Y+     +++l+s l+  ++ +++++si+e++ae++ri+++C+  ++
  CTQ30047.1  6 EIGDKWIINSDQYQFILSEKKVaKSGRKAGEEWlDTIGYYPK----IEQLISGLIHHHIQQSTITSIEEMAAEIKRIGEMCASSIK 87
                56677889999***********7778899*************....99*********************************99886 PP

>> SeqA_N  SeqA protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0027        25       6      18 ..      13      25 ..       5      28 .. 0.84
   2 ?    5.3   0.1    0.0014        12      15      28 ..      72      86 ..      69      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0027
      SeqA_N  6 vDeeLYrYIasnt 18
                ++ + Y++I+s+ 
  CTQ30047.1 13 INSDQYQFILSEK 25
                66788*****985 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0014
      SeqA_N 15 asntqaiGE.SaSdI 28
                a+++++iGE  aS I
  CTQ30047.1 72 AAEIKRIGEmCASSI 86
                99*******446665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 740.61
//
Query:       CTQ30048.1  [L=193]
Description: Uncharacterized exonuclease CP81 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-18   66.4   0.0    5.4e-18   66.1   0.0    1.1  1  RNase_T   Exonuclease
    2.2e-05   24.5   0.6    9.7e-05   22.4   0.6    2.0  1  DUF5051   3' exoribonuclease, RNase T-like


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.0     6e-22   5.4e-18       1     163 [.      21     182 ..      21     184 .. 0.84

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 6e-22
                 EEEEEEESSSTTCTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETTTCEEEESS CS
     RNase_T   1 vviDlEttgldakekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahnaafdvgfl 99 
                 ++iD+Ettgl      ei+ei+ i  +g         ++++kpt++  ++de+++++git+em+  ap+ k+v  +++ l+  +  +v +na +d   +
  CTQ30048.1  21 LFIDTETTGLGD--DAEIVEICIIDKNGFI-----MLNTLIKPTKP--IPDEVIAIHGITNEMVAHAPTWKDVHGAVANLFF-NYGFVIYNADYDTRLI 109
                 58*********7..8*******99866665.....489********..************************8888877666.55699999******** PP

                 HHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHC..........HHHHHHHHHTTCHSSSSTSSHHHHHHHHHH CS
     RNase_T 100 raadkrilkkevpkrnqfldtlildkatlkelar..........tsldklaeklgleedgraHrAldDaeatak 163
                 r++ ++++   +   ++f+d    + + ++e+++          ++l ++a++ g+   graHrAl+D+++t+ 
  CTQ30048.1 110 RQTAELNGLG-TDGLSSFIDHSLCAMMLYAEYRGepgryhgykwHKLVDAAAHEGVVVEGRAHRALADCKMTLG 182
                 ****999665.56566666665555555555555555**********************************985 PP

>> DUF5051  3' exoribonuclease, RNase T-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.6   1.1e-08   9.7e-05       2     158 ..      20     180 ..      19     188 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.1e-08
     DUF5051   2 klmiDiEtlgneetaelvsIGaVffpetG..eFyaeidlesdeeagidaetieWWlkqskearaellkdt.qeakslkdalqaleeFlekslkvwanga 97 
                 +l+iD+Et+g   +ae+v+I ++  +++G     + i++++  +    +e i         a + ++++   +a++ kd+  a+ +    +  ++ ++a
  CTQ30048.1  20 YLFIDTETTGLGDDAEIVEICII--DKNGfiMLNTLIKPTKPIP----DEVI---------AIHGITNEMvAHAPTWKDVHGAVANLF-FNYGFVIYNA 102
                 69*********************..9999886667777755542....2222.........223333222257899999999999988.3567999*** PP

     DUF5051  98 sfDlviLraafel...........................lipwkywndrdvrtlvala..pelekgeekkreipfegvkHnALaDAkhq 158
                 ++D +++r+  el                           +               ++   ++l     +++ +  eg +H ALaD k  
  CTQ30048.1 103 DYDTRLIRQTAELnglgtdglssfidhslcammlyaeyrgE-----------PGRYHGYkwHKLVDA-AAHEGVVVEGRAHRALADCKMT 180
                 **********999****999998888876655444333321...........222221122233333.2444566789999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1486.08
//
Query:       CTQ30049.1  [L=75]
Description: Uncharacterized 8.5 kDa protein in gpA 5'region [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-09   35.5   5.2    6.7e-09   35.5   5.2    1.7  2  zf-dskA_traR   Prokaryotic dksA/traR C4-type zinc finger
     0.0032   17.5   0.4     0.0043   17.0   0.4    1.2  1  DZR            Double zinc ribbon
  ------ inclusion threshold ------
      0.045   13.9   0.9      0.064   13.4   0.9    1.2  1  Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (
      0.051   13.8   0.1      0.072   13.3   0.1    1.4  1  LIM            LIM domain
      0.069   13.2   0.3      0.092   12.8   0.2    1.3  1  ArfGap         Putative GTPase activating protein for Arf
      0.073   12.7   0.3      0.073   12.7   0.3    2.1  3  zf_UBZ         Ubiquitin-Binding Zinc Finger


Domain annotation for each model (and alignments):
>> zf-dskA_traR  Prokaryotic dksA/traR C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.82   2.5e+03      13      21 ..       7      15 ..       6      19 .. 0.72
   2 !   35.5   5.2   2.3e-12   6.7e-09       5      35 ..      33      64 ..      29      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.82
  zf-dskA_traR 13 IpeaRlral 21
                  I+ +R +a 
    CTQ30049.1  7 IAQQREQAE 15
                  777888875 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 2.3e-12
  zf-dskA_traR  5 s.CeeCGEpIpeaRlralPgarlCveCqekae 35
                  + CeeC  pIpe+R+ a+ g+ lCv C+e ae
    CTQ30049.1 33 FtCEECEAPIPEERRIAIQGVALCVTCKEIAE 64
                  56**************************9887 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.4   1.4e-06    0.0043       9      41 ..      29      66 ..      22      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.4e-06
         DZR  9 ppdarfCseCgtklkavaa.....edrCpsCgekvdpe 41
                 p+  +C+eC ++++++ +        C+ C+e ++++
  CTQ30049.1 29 APSRFTCEECEAPIPEERRiaiqgVALCVTCKEIAELK 66
                466679********97777*************998876 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.9   2.2e-05     0.064      17      39 ..      34      59 ..      32      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.2e-05
  Auto_anti-p27 17 tCpvCgvPLmrdr...kggkvyCvaC 39
                   tC++C +P+ ++r    +g  +Cv+C
     CTQ30049.1 34 TCEECEAPIPEERriaIQGVALCVTC 59
                   8************99846888***** PP

>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.4e-05     0.072      24      53 ..      30      59 ..      10      64 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
                TTTSB-TTT-SB-CTT.CEEETTEEEEHHH CS
         LIM 24 eeCFtCsdCqkeLkegsfyekdgklyCkkd 53
                ++ FtC++C+ ++ e++ + ++g  +C ++
  CTQ30049.1 30 PSRFTCEECEAPIPEERRIAIQGVALCVTC 59
                577*************99999999999887 PP

>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   3.1e-05     0.092       8      50 ..      27      70 ..      17      72 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.1e-05
                CCSCCCCB-TTT-SBS--EEET.TTTEEE-HHHHHHHCCS.TTT CS
      ArfGap  8 lkepenkvCaDCgakeptWasl.nlgvflCieCsgvHrslgvhi 50
                +  p+  +C +C+a+ p+   +   gv lC++C+ +    g+h+
  CTQ30049.1 27 IAAPSRFTCEECEAPIPEERRIaIQGVALCVTCKEIAELKGKHY 70
                45677789*********888882458*******99877666665 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.4   4.1e+03      26      32 .]       4      10 ..       4      10 .. 0.86
   2 ?   12.7   0.3   2.5e-05     0.073       2      15 ..      32      45 ..      31      48 .. 0.87
   3 ?   -2.4   0.2       1.2   3.7e+03       5      10 ..      56      61 ..      55      62 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.4
      zf_UBZ 26 AkdLqee 32
                A+d+ ++
  CTQ30049.1  4 AMDIAQQ 10
                8999987 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.5e-05
      zf_UBZ  2 tylCerCgkeipes 15
                 ++Ce+C ++ipe+
  CTQ30049.1 32 RFTCEECEAPIPEE 45
                69**********97 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.2
      zf_UBZ  5 CerCgk 10
                C  C++
  CTQ30049.1 56 CVTCKE 61
                666764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 572.72
//
Query:       CTQ30050.1  [L=74]
Description: Uncharacterized 8.8 kDa protein in GpA 5'region [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-24   83.0   4.6    1.1e-23   82.8   4.6    1.0  1  DUF2732   Protein of unknown function (DUF2732)


Domain annotation for each model (and alignments):
>> DUF2732  Protein of unknown function (DUF2732)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   4.6   6.3e-28   1.1e-23      11      74 .]      10      73 ..       2      73 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 6.3e-28
     DUF2732 11 adsealavlLnkArseerkdrallvssRLnaLaihiqqkelsavEaaeLLrkEaerfeneaqel 74
                 +++ l + +  A++eerk+ral+vs+RL+aLa hi+ k++sa+EaaeLLr+Ea+r+ene+qel
  CTQ30050.1 10 ENTDLLLEVIGIAKREERKGRALAVSIRLEALATHIANKGMSAIEAAELLRREATRYENESQEL 73
                466677788899***************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 631.10
//
Query:       CTQ30051.1  [L=123]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 994.82
//
Query:       CTQ30052.1  [L=66]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-24   83.0   0.2    1.1e-23   82.8   0.2    1.0  1  DUF2724   Protein of unknown function (DUF2724)


Domain annotation for each model (and alignments):
>> DUF2724  Protein of unknown function (DUF2724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.2   6.1e-28   1.1e-23       1      56 [.       5      57 ..       5      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 6.1e-28
     DUF2724  1 mpSfAslLkkqSpatqlrhfghGwielpdGkrwkPepsqvrllkGlskkkkgtkki 56
                +pSfAslLkk Sp+   +h+ghGwi++ dG+rw+P++sq +ll+Gl+ kk+   k+
  CTQ30052.1  5 EPSFASLLKKRSPS---MHYGHGWIMGSDGQRWHPCSSQSELLNGLTAKKVSAVKR 57
                69************...********************************9877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 514.20
//
Query:       CTQ30053.1  [L=169]
Description: Regulatory protein CII [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.5e-69  230.4   0.2    7.3e-69  230.3   0.2    1.0  1  Phage_CP76  Phage regulatory protein CII (CP76)
  ------ inclusion threshold ------
       0.14   12.0   0.0        1.1    9.2   0.0    2.2  2  IF2_N       Translation initiation factor IF-2, N-terminal re


Domain annotation for each model (and alignments):
>> Phage_CP76  Phage regulatory protein CII (CP76)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.3   0.2   8.1e-73   7.3e-69       1     157 []       4     160 ..       4     160 .. 0.99

  Alignments for each domain:
  == domain 1  score: 230.3 bits;  conditional E-value: 8.1e-73
  Phage_CP76   1 fkvskqshfdeAcraFaaahnlaelarkagmkaqllrnKLnPeQphkltvkelllltdvteDatlvdgllaqldclpvvlvnevekekltsyvLkatae 99 
                 f+vs ++hfd+Acr+Faa+hn++ela kag+k+ +l nKLnPeQph+lt++e+++ltd+teD+tlvdg+laq++clp+v+vne +kekl+syv++a++e
  CTQ30053.1   4 FRVSSHAHFDDACRKFAATHNVKELADKAGIKPHTLYNKLNPEQPHQLTPREIWTLTDLTEDSTLVDGFLAQIHCLPCVPVNELAKEKLQSYVMRAMSE 102
                 89************************************************************************************************* PP

  Phage_CP76 100 vGelaaeavsaerltqtrrrelvskvnaairlLvLaalavesRlqanpalastvDvls 157
                 +G+la++avs++rlt +r+++++++vna+ir+L+L a+a+++Rlqanpa++s vD++s
  CTQ30053.1 103 LGKLASGAVSGDRLTPARKQNMIASVNAGIRMLSLSAMALQARLQANPAMTSVVDTVS 160
                 ********************************************************97 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00012       1.1       6      25 ..      25      44 ..      21      47 .. 0.90
   2 ?   -0.3   0.0      0.11   9.5e+02       6      12 ..      84      90 ..      83      91 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00012
       IF2_N  6 VyeLAkeLgvkskevikkLf 25
                V+eLA++ g+k++ +  kL+
  CTQ30053.1 25 VKELADKAGIKPHTLYNKLN 44
                9*****************96 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.11
       IF2_N  6 VyeLAke 12
                V+eLAke
  CTQ30053.1 84 VNELAKE 90
                89****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1312.25
//
Query:       CTQ30054.1  [L=73]
Description: putative regulator from bacteriophage origin [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.088   13.0   0.0       0.12   12.6   0.0    1.2  1  HTH_17    Helix-turn-helix domain
       0.17   11.8   0.0       0.18   11.7   0.0    1.2  1  MerR_2    MerR HTH family regulatory protein


Domain annotation for each model (and alignments):
>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.3e-05      0.12       1      35 [.      13      47 ..      13      49 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.3e-05
      HTH_17  1 lltveEaAelLgvsrstvyrlirrgelpaak.iGrr 35
                +l  +E ++  g  + t+ +li  g+l + k +G++
  CTQ30054.1 13 YLPLDEYCRRTGTNKETAKNLIEYGKL-PIKpKGKQ 47
                6778899********************.99989987 PP

>> MerR_2  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     2e-05      0.18       2      45 ..      15      59 ..      14      73 .] 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2e-05
      MerR_2  2 tieelcertgieeeflieLvelgliepeiee.eewyfdesqlarl 45
                 ++e+c rtg ++e  + L+e+g + ++  + +++ + e ++a l
  CTQ30054.1 15 PLDEYCRRTGTNKETAKNLIEYGKLPIKPKGkQTKGLVEVNMAAL 59
                689********************9988877744554666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 562.41
//
Query:       CTQ30055.1  [L=194]
Description: Repressor protein from bacteriophage origin [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-33  113.3   0.0    7.7e-33  112.8   0.0    1.2  1  Phage_CI_C     Bacteriophage CI repressor C-terminal domain
    1.5e-24   85.8   0.0    3.2e-24   84.8   0.0    1.5  2  Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix do


Domain annotation for each model (and alignments):
>> Phage_CI_C  Bacteriophage CI repressor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   0.0   8.6e-37   7.7e-33       2     101 ..      86     188 ..      85     189 .. 0.94

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 8.6e-37
  Phage_CI_C   2 kvkkvklvngkleesglvlldkkllkkelkep...lvieeekklylvdkkeadvsdGkwLvdieGrlsirelariPvkklrvsgdevsfecklddikvl 97 
                 +v ++k+v+g+l++sg+++ldk+ +    + p   l + e +++y++++++++v dG+wLvdieG++s+r l+riPvkk+rvsg+++ f+c++ddi v+
  CTQ30055.1  86 RVSRQKIVDGQLYDSGVLMLDKATFLPGKAVPtkpLCVIESSTTYVIEREFSEVFDGEWLVDIEGKTSVRTLTRIPVKKVRVSGAGAAFDCSIDDISVI 184
                 5899******************9997776655555**************************************************************** PP

  Phage_CI_C  98 grvv 101
                 grvv
  CTQ30055.1 185 GRVV 188
                 ***8 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   3.5e-28   3.2e-24       2      63 ..      14      75 ..      13      77 .. 0.96
   2 ?   -3.4   0.0       1.2   1.1e+04      38      50 ..     140     152 ..     138     155 .. 0.69

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 3.5e-28
                   HHHHHHHHHT-SSCHHHHCCTT--HHHHHHHHHSSS--HHHHHHHHHHH---HHHHHC-SS- CS
  Phage_CI_repr  2 vleRlmsaygvkmqkeLAdlLgiakssvstwvrRdffPgdvvvtcaletdtsLewLatGkgq 63
                    l+R+++ayg+ ++ +LA++Lgia ss++++++RdffP+d vv+c  et++ LewL+tG+g 
     CTQ30055.1 14 TLDRVIEAYGFRTKVALAEHLGIASSSLANRYKRDFFPADIVVRCMAETGATLEWLVTGNGP 75
                   699*********************************************************97 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.2
                    --HHHHHHHHHHH CS
  Phage_CI_repr  38 fPgdvvvtcalet 50 
                    f g+++v +  +t
     CTQ30055.1 140 FDGEWLVDIEGKT 152
                    6678888887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1509.72
//
Query:       CTQ30056.1  [L=345]
Description: Integrase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-26   90.9   0.2    2.8e-13   50.0   0.0    2.5  2  Phage_integrase  Phage integrase family
  ------ inclusion threshold ------
       0.13   11.9   0.2        0.3   10.8   0.2    1.6  1  SelB-wing_3      Elongation factor SelB, winged helix


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   1.1e-13   9.6e-10       2      77 ..     177     248 ..     176     254 .. 0.90
   2 !   50.0   0.0   3.1e-17   2.8e-13     114     170 ..     265     323 ..     261     325 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.1e-13
                      HHHHHHHHHHHHCCGCHHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEEEEECSSSSEEEEECTHHHH CS
  Phage_integrase   2 vltedeverllaaleeslkirdklllellyetGlRisEllsLrvkdldlengvilvheregKgskeravplseeal 77 
                      +lt++++e+ll+ +++s++    ++++++++tG+R sE+ sL+ +++    ++ ++   ++Kg+k+r++p+s e++
       CTQ30056.1 177 YLTAEQIESLLKECRNSSAEDLEIIVKICLATGARWSEAESLKRSQV-SSGKITYI---KTKGKKNRTIPISAELM 248
                      79**************888888999*********************9.56677777...99***********8876 PP

  == domain 2  score: 50.0 bits;  conditional E-value: 3.1e-17
                      HHHHHHHHCT-S..SC--TTHHHHHHHHHHHHHCTSHHHHHHHHT-SSCCHHHHHHCCC CS
  Phage_integrase 114 afkraveeagie..kpltpHtlRhsfataLleagvdlrvvqkllGHssisttqiYthva 170
                      af++a  +agie  +   +H lRh+fa++ + +g ++ v+qk+lGH++i++t++Y+h a
       CTQ30056.1 265 AFRNALDRAGIElpPGQLTHVLRHTFASHFMMNGGNILVLQKILGHTDIKMTMRYAHFA 323
                      7999********7655568*************************************965 PP

>> SelB-wing_3  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   3.4e-05       0.3      31      45 ..      72      86 ..      72      87 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.4e-05
                 HHHHCTSEEEETTEE CS
  SelB-wing_3 31 yfDrigvTrRvgDkR 45
                 +fDr+g+T+++g+kR
   CTQ30056.1 72 WFDRHGITLKDGEKR 86
                 5*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2691.20
//
Query:       CTQ30057.1  [L=27]
Description: hypothetical protein CH1034_300165 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (27 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       186  (0.0103743); expected 358.6 (0.02)
Passed bias filter:                      133  (0.00741815); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.31
# Mc/sec: 258.11
//
Query:       CTQ30058.1  [L=33]
Description: hypothetical protein CH1034_300166 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.21s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 296.22
//
Query:       CTQ30059.1  [L=120]
Description: putative lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1085.75
//
Query:       CTQ30060.1  [L=96]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-08   33.5   0.0    3.8e-08   33.4   0.0    1.1  1  HdeA      HdeA/HdeB family
  ------ inclusion threshold ------
       0.13   11.9   0.0       0.23   11.1   0.0    1.4  1  SSXRD     SSXRD motif


Domain annotation for each model (and alignments):
>> HdeA  HdeA/HdeB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   4.2e-12   3.8e-08      17      89 ..       6      78 ..       1      81 [. 0.81

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 4.2e-12
                XXGGG.XSCCS-GGG-BHHHHHTS-GGGHHHHHHHHHHTTSCCSGCCCCSHHHHHHHHHHHHHHHHHHTTTSB CS
        HdeA 17 lAqkaaakakkdlskmtCedFldldeeskpkviywvegynskgkkgdavvdeegiekvtpkvveyCkknpkkk 89
                + ++   ++  +   m C+d+l+ld+ +++++++w+ +     ++ + ++ +e+   +tp ++e C ++p+  
  CTQ30060.1  6 VGKDVVPDEARTRDMMRCQDYLQLDPRAWTPMVIWLMNDPFSLEPPEWTDFHEAELVLTPILTEICRQEPDVW 78
                333333333334458**********************99998****************************875 PP

>> SSXRD  SSXRD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.5e-05      0.23       3      16 ..      72      85 ..      71      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.5e-05
                XXXXXXXXXXXXXX CS
       SSXRD  3 rkevevwayrLRER 16
                r e +vw  +LRER
  CTQ30060.1 72 RQEPDVWLTSLRER 85
                77889********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 847.40
//
Query:       CTQ30061.1  [L=204]
Description: DNA-binding response regulator in two-component regulatory system with EvgS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-27   96.2   0.1    1.8e-27   95.7   0.1    1.2  1  Response_reg  Response regulator receiver domain
    6.5e-14   51.2   0.0    1.1e-13   50.5   0.0    1.4  1  GerE          Bacterial regulatory proteins, luxR family
     0.0022   17.6   0.0     0.0044   16.7   0.0    1.5  1  Sigma70_r4_2  Sigma-70, region 4
     0.0038   16.7   0.0     0.0078   15.7   0.0    1.5  1  Sigma70_r4    Sigma-70, region 4


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.1     4e-31   1.8e-27       2     112 .]       4     114 ..       3     114 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 4e-31
                   EEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEEE CS
  Response_reg   2 livdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddfl 98 
                   +i+dD+pl+r ++r+ll+++g+++ ae ++g+ a++ ++++++dl+++D+++p+++G+e+l+++r++ ++  +ii++a++e  + ++  ++ga++f+
    CTQ30061.1   4 IIIDDHPLARIAIRNLLDSNGITVAAELDSGAHAVQTAESMQPDLLIVDVDIPELSGIEVLEQLRKRRYQGTIIIISAKNELFYGKRSADCGANGFV 100
                   79********************8888*********************************************************************** PP

                   ESSG-HHHHHHHHH CS
  Response_reg  99 sKpfdpeeLlkale 112
                   sK+  ++++l+a+e
    CTQ30061.1 101 SKKEGMNNILAAIE 114
                   *********99985 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   2.4e-17   1.1e-13       2      57 .]     143     198 ..     142     198 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 2.4e-17
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 +Ls +E++v+r++ +G   + I++++niS+kTV+++k ++m KL++  + el+++a
  CTQ30061.1 143 TLSTQEMKVFRYILSGVDYTTIGSKMNISNKTVSTYKVRLMDKLGCSTLLELYDFA 198
                 8***************************************************9986 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   9.9e-07    0.0044       6      54 .]     139     186 ..     138     186 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 9.9e-07
                   HHHTTS-HHHHHHHHHHHTS---HHHHHHHHT--HHHHHHHHHHHHHHH CS
  Sigma70_r4_2   6 ealaeLperqreifllryleglsykEIAellgisegtVksrlsRArkkL 54 
                   + l++L++++ ++f  + l g +y  I ++++is +tV ++  R + kL
    CTQ30061.1 139 DRLDTLSTQEMKVFRYI-LSGVDYTTIGSKMNISNKTVSTYKVRLMDKL 186
                   5799************7.**********************998877665 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.7e-06    0.0078       2      48 ..     141     186 ..     140     187 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.7e-06
                 HHHS-HHHHHHHHHHH.TTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   2 LasLpererevlelrf.geglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 L++L+ +e +v+++   g +  +  Ig +++iS  +V+  + r ++kL
  CTQ30061.1 141 LDTLSTQEMKVFRYILsGVD--YTTIGSKMNISNKTVSTYKVRLMDKL 186
                 899999****9976665555..889*********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.33
# Mc/sec: 1863.72
//
Query:       CTQ30062.1  [L=1080]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-35  121.3   0.0    3.7e-17   62.5   0.0    2.8  3  SBP_bac_3     Bacterial extracellular solute-binding proteins
    1.6e-26   93.0   0.0    3.8e-26   91.8   0.0    1.7  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    1.3e-25   89.7   0.1    1.5e-24   86.3   0.0    3.0  4  Response_reg  Response regulator receiver domain
    9.4e-15   54.4   0.1    9.4e-15   54.4   0.1    4.1  3  HisKA         His Kinase A (phospho-acceptor) domain
      5e-10   39.5   0.7      5e-10   39.5   0.7    2.8  2  Hpt           Hpt domain
  ------ inclusion threshold ------
       0.12   12.2   0.1       0.25   11.2   0.1    1.4  1  TMEM51        Transmembrane protein 51


Domain annotation for each model (and alignments):
>> SBP_bac_3  Bacterial extracellular solute-binding proteins, family 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   1.7e-18     5e-15       2     224 ..      57     275 ..      56     276 .. 0.92
   2 !   62.5   0.0   1.2e-20   3.7e-17       2     222 ..     303     516 ..     302     518 .. 0.89
   3 ?   -1.7   0.0      0.51   1.5e+03     107     161 ..     840     896 ..     814     899 .. 0.64

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 1.7e-18
                 EEEE-S.-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-.SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHG CS
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   2 rvgvda.dypPfsykdengeltGfdvdlakaiakrlgvkvefvpv.swdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdask 98 
                 +vg+   +  P +y  +++ ++G++ d++  +a +lg+kv ++ + + +++++al++ +vD + ++++  ++ +  +d s p +++  +l++  k+   
  CTQ30062.1  57 TVGTWLpERTPIVYDGDEKSYQGINADYLALMAHSLGLKVIIRQYdTEQQALTALADRQVDTLLTQVAHRDALAPGLDQSAPLLKTWPTLVTSLKS--P 153
                 6666652455******************************99999999********************************************9664..3 PP

                 TCCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE.ECGGCECEEEEEEETTTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
   SBP_bac_3  99 issiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv.eeplsseeyaiavrkgds 196
                  + ++   d    +++ +++ +  ++++++++ +a+i+ +d++ +al+ + +g+ +++++++++  + + k+  + +v++ +    ++   ++ r + +
  CTQ30062.1 154 LPPLT--TD-RRVTLACTRDCAFFDIIQQAFP-NAKITLYDSDYQALASVVSGENQYFIGNNITTGHCISKYFSQSLVIAhYFRQQEQHNRFVTRDDRP 248
                 44554..24.4569**************9888.99********************************************9999999999********** PP

                 HHHHHHHHHHHHHHHTTHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 197 eLrkainkalaelkadgtlakisekWfg 224
                 eL + +++++ ++  d t  +i++ W++
  CTQ30062.1 249 ELHQLLDRFIHAVDSD-TAMRIMQNWLN 275
                 *************999.999******86 PP

  == domain 2  score: 62.5 bits;  conditional E-value: 1.2e-20
                 EEEE-S-BTTTBEE-TTS-EESHHHHHHHHHHHHCT-EEEEEE-.SGGGHHHHHHTTSSSEEESSEB--HHHHTTEEEESESEEEEEEEEEEETTSHGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3   2 rvgvdadypPfsykdengeltGfdvdlakaiakrlgvkvefvpv.swdelipalksgkvDiaiaaititpeReekvdFsqpyfsagqvllvrkkdaski 99 
                 r  v++ +pPf+ +d++ el G+  d+++ +  ++g++++ + v + ++l + +++  + i + a t  p+ ++ v +s+p  + + vl++r ++a + 
  CTQ30062.1 303 RLLVNPYFPPFTLVDNEDELRGIMADMLNIVSLQTGLQFDPILVrNRQALAKRMEKEDWAI-MPAATLIPQPQAYVTLSDPLINVAFVLVAR-GSAPDQ 399
                 6778999***********************************9989999999999999985.6789999***********************.765433 PP

                 CCHSSCGCGTTSEEEEETTSHHHHHHHHHHHCTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCCGCCEEEE.ECGGCECEEEEEEETTTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 100 ssiksladLkgkkvgvqagstaeellkeelkkgaeivefdtleealqaLkngrvdavvadspvlaylvkknpdkkvvlv.eeplsseeyaiavrkgdse 197
                   ++        +++   g  a+  lk  ++  ++ ve+d+   a++++++g+vda+va++ +++y+++++  + ++ +    l  + +  a++++++ 
  CTQ30062.1 400 HLLT-----RSARIALPVGPIAAHDLKARFP-LINWVETDNVGVAMKMVEEGEVDAAVASELSARYMIDHYYPQGLHYTrIDGLPVAAIRLAIPRDEPV 492
                 3333.....4579******999999999777.99*******************************************9999999999999********* PP

                 HHHHHHHHHHHHHHTTHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 198 LrkainkalaelkadgtlakisekW 222
                 L + +nkal+ +     + ++ ekW
  CTQ30062.1 493 LAAILNKALQVIPPR-DILQMTEKW 516
                 *********988765.555666666 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.51
                 CGTTSEEEEETTSHHHHH.HHHHHHC..TSEEEEESSHHHHHHHHHTTSSSEEEEEHH CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SBP_bac_3 107 dLkgkkvgvqagstaeel.lkeelkk..gaeivefdtleealqaLkngrvdavvadsp 161
                  L+g  + +  ++ +  l lk++l +  g ++ e  + eea ++L+++ +d +++d  
  CTQ30062.1 840 ALPGLAILIADDHPTNRLlLKRQL-StiGYSVDEACDGEEAENKLASKHYDLLITDLN 896
                 566655555555444444144433.336666667778888888888888888888865 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0   1.3e-29   3.8e-26       2     110 ..     710     821 ..     709     823 .. 0.93

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 1.3e-29
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE.....EETEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEE CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveika.....seddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwve 95 
                 d++ Lrqi++nl++Na+kf t +g i+v+++      ++++l + v+D+G+Gi+++++  lf ++ q + + r++ g+GlGl i+k+lv lm+G++++ 
  CTQ30062.1 710 DPQALRQILNNLIGNALKF-TVEGAIQVSCRLtpaneTQGELALMVSDSGCGISEAEQATLFHRYAQ-ARQGRQQTGSGLGLVICKELVALMQGRLEMV 806
                 7889***************.99****99999866644349***************************.99999************************** PP

                 EETTTEEEEEEEEES CS
   HATPase_c  96 sepgrGttftftlpl 110
                 s+pg Gttft+tlp 
  CTQ30062.1 807 SRPGVGTTFTITLPV 821
                 *************97 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.3     4e+03      25      50 ..      97     122 ..      81     124 .. 0.74
   2 ?   -3.8   0.0       4.8   1.4e+04       3      20 ..     315     332 ..     314     339 .. 0.83
   3 ?   -2.7   0.0       2.2   6.5e+03      53      69 ..     547     563 ..     489     567 .. 0.63
   4 !   86.3   0.0   5.2e-28   1.5e-24       1     109 [.     846     953 ..     846     956 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.3
                   EEEEESSHHHHHHHHHHHHESEEEEE CS
  Response_reg  25 evaeaedgkealellkeekvdlillD 50 
                    +++ ++ ++al  l  ++vd +l+ 
    CTQ30062.1  97 IIRQYDTEQQALTALADRQVDTLLTQ 122
                   46789999999999999999999875 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.8
                   EESSSHHHHHHHHHHHHH CS
  Response_reg   3 ivdDdplvrellrqllee 20 
                   +vd++  +r +++++l+ 
    CTQ30062.1 315 LVDNEDELRGIMADMLNI 332
                   79999999*999999984 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.2
                   CSSSEHHHHHHHHHHCT CS
  Response_reg  53 mpgmdGlellkeireed 69 
                   ++   Gl l++e+r+++
    CTQ30062.1 547 ISLGWGLSLCREVRKRK 563
                   33357999999998876 PP

  == domain 4  score: 86.3 bits;  conditional E-value: 5.2e-28
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +li+dD+p++r ll+++l   gy +v+ea dg+ea ++l ++++dl+++D+nmp+ dGl l+  +r++ p l ++ +ta +  + ++++l  g++ +
    CTQ30062.1 846 ILIADDHPTNRLLLKRQLSTIGY-SVDEACDGEEAENKLASKHYDLLITDLNMPKKDGLALAASLRRRYPGLVIWGVTASALPQSREACLASGMNMC 941
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHH CS
  Response_reg  98 lsKpfdpeeLlk 109
                   l+Kp++ + L +
    CTQ30062.1 942 LFKPVSVQTLSH 953
                   ******999976 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.45   1.3e+03      30      55 ..      95     123 ..      85     125 .. 0.74
   2 ?    0.1   0.5      0.29   8.7e+02      43      66 ..     314     337 ..     282     338 .. 0.69
   3 !   54.4   0.1   3.1e-18   9.4e-15       1      67 []     596     662 ..     596     662 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.45
                 .....T-HSSCHHHHHHHHHHHHHHHHHH CS
       HisKA  30 e...gklteelkeyletiesearrldhlv 55 
                 +    +++ e++++ + + ++++ l+ +v
  CTQ30062.1  95 KviiRQYDTEQQALTALADRQVDTLLTQV 123
                 334447999999*********99998876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA  43 tiesearrldhlvedlLdlsriea 66 
                 t++++++ l+ +  d+L + ++++
  CTQ30062.1 314 TLVDNEDELRGIMADMLNIVSLQT 337
                 567778888888888888887776 PP

  == domain 3  score: 54.4 bits;  conditional E-value: 3.1e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHH.HHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
       HisKA   1 slgrflagvaHELrtPLsailgnaeaLkregklteelke.yletiesearrldhlvedlLdlsrieag 67 
                 +++rfla+++HELrtP+sai g++e+L +  +l+ ++++ ++e + s a+ l+ l+ ++Ld+ +ie+g
  CTQ30062.1 596 AKSRFLASMSHELRTPVSAIVGFLELLAKP-ELNVSQRKeAIELAGSTAQTLLGLIGNILDIDKIESG 662
                 689************************775.566666555**************************97 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.8       2.5   7.3e+03      51      74 ..     555     582 ..     554     593 .. 0.61
   2 !   39.5   0.7   1.7e-13     5e-10       1      73 [.     989    1058 ..     989    1079 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHCTSCHHHHHHHH......H CS
         Hpt  51 lahelEdlldragelelepelle......a 74 
                 l++e+ +  +++++++le+el++      a
  CTQ30062.1 555 LCREVRK--RKDSQQRLEEELAQkealscA 582
                 6777777..556777777777776644443 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 1.7e-13
                  HHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHCTSCHHHHHHHH CS
         Hpt    1 ellelfleeaeelleqleqaldqedlqelaraaHtLKGsagmlGltelaelahelEdlldragelelepelle 73  
                  e+le+f++ ++ +l++++qa+++   q   ra+H+L+Gsa +lG t+l++l++ +E    +  +    +++le
  CTQ30062.1  989 EMLETFRDASAADLQAAGQAIARHEPQIFLRALHRLHGSAQILGITALQQLCAPFEA---KRPDSLTPASCLE 1058
                  79******************************************************9...4444444444444 PP

>> TMEM51  Transmembrane protein 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   8.3e-05      0.25      27     122 ..     503     598 ..     494     611 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.3e-05
      TMEM51  27 vvPgeseadkpkasanssskpdkdsgkeekksktssvAyVLvGaGval.LlLsicLgirdkkrarqeeeelaraqeslqeeeeeqeeeesaeeaasr 122
                 v+P     + +++ +  ss+ + ++ ++ +++    +A+ Lv   + l   Ls+c  +r++k  +q+ ee  +++e+l+ + e++++++ ++++a++
  CTQ30062.1 503 VIPPRDILQMTEKWSKISSQ-QIENWSQYSRQFYQLIAFALVLIAISLgWGLSLCREVRKRKDSQQRLEEELAQKEALSCALEREKDKAIQATKAKS 598
                 66665555555555555555.3333333333444556666666666662359***********9999999887788888787777777776555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1080 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       926  (0.0516482); expected 358.6 (0.02)
Passed bias filter:                      750  (0.0418317); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.39
# Mc/sec: 8248.20
//
Query:       CTQ30063.1  [L=210]
Description: hypothetical protein CH1034_300171 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-47  160.0   7.3    3.6e-47  160.0   7.3    1.9  2  YfdX         YfdX protein
  ------ inclusion threshold ------
      0.094   12.6  10.8      0.073   13.0   5.2    2.7  3  TarH         Tar ligand binding domain homologue
       0.11   13.1   1.9       0.22   12.1   0.9    2.1  2  Reductase_C  Reductase C-terminal


Domain annotation for each model (and alignments):
>> YfdX  YfdX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.4      0.11   6.7e+02     107     142 ..      16      51 ..       6      53 .. 0.70
   2 !  160.0   7.3     6e-51   3.6e-47       1     149 []      54     205 ..      54     205 .. 0.99

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.11
                 EEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT CS
        YfdX 107 llPLatypaavkkAaelleegkyyeAkeaLkealnt 142
                   P+ +++ a+++ a++ + +  +eA ++L+ a ++
  CTQ30063.1  16 TSPVWATDSATAAPAAAATTQVQKEAADVLQVAVQG 51 
                 556667777777777777777778888888887665 PP

  == domain 2  score: 160.0 bits;  conditional E-value: 6e-51
                 HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-...S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHHHTT-HHHHHHHHHH CS
        YfdX   1 AlrdiqkArlaldqgdtkeAkkllekAqgkleaaladdpklvk...kapasadalvPvdaevividdladtpekkaaikkanellkkgdtqaArelLkl 96 
                 A+rdiq Arlal++g++++Akkl+++A++ l+a  a ++k+vk   ka++ ad +v ++a++ +++d+++tpek++ai++ane+l+kgd+++A+++L+l
  CTQ30063.1  54 AMRDIQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKtdaKAKMIADRYVIINASIALSEDYVATPEKESAIQSANEKLAKGDQKGAIDTLRL 152
                 8****************************************999999999999********************************************** PP

                 TT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-EEEEEE CS
        YfdX  97 lgseidittallPLatypaavkkAaelleegkyyeAkeaLkealntlvfvsvd 149
                 +g ++  +++l+PL+++++av++A+ell++gkyyeA+++Lk a++++v++s++
  CTQ30063.1 153 AGIGVIENQYLMPLNQTRKAVAQAQELLKAGKYYEANLVLKGAEEGIVVDSEM 205
                 **************************************************985 PP

>> TarH  Tar ligand binding domain homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   5.2   1.2e-05     0.073      30     111 ..      19     101 ..       4     108 .. 0.69
   2 ?    4.0   0.2    0.0068        41      56      99 ..      98     143 ..      96     144 .. 0.91
   3 ?   -1.0   0.0      0.24   1.4e+03     128     143 ..     169     184 ..     149     191 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
                 SSSHHHHHHHCHHHHHHH.H.HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSSHHHHHHHHHHHHHHHHHHHHHTS---G CS
        TarH  30 lsglsrsndalrevytnrlq.qqaaLaearvsllqaRltLnragiaaladeaedakellaraeeslaqseeawkaYlalprta 111
                 +++  ++  a  +++t ++q  +a++ ++ v+ ++a   +  a  a+++++++ ak+l + a ++la+ +++w+++ ++ ++a
  CTQ30063.1  19 VWATDSATAAPAAAATTQVQkEAADVLQVAVQGANAMRDIQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKTDAKA 101
                 455555555555555555220233444555555666667777889********************************998887 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0068
                 HHHHHHHHHHHHHHHHHHHHTTTSSSSS..SHHHHHHHHHHHHHHH CS
        TarH  56 earvsllqaRltLnragiaaladeaeda..kellaraeeslaqsee 99 
                 +a++++   R  +  a+ia+ +d  +++  +++++ a+e la+ ++
  CTQ30063.1  98 DAKAKMIADRYVIINASIALSEDYVATPekESAIQSANEKLAKGDQ 143
                 789999999*************998888889***********9987 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHTT- CS
        TarH 128 lqdglapliaaleagn 143
                  ++++a++ ++l+ag+
  CTQ30063.1 169 TRKAVAQAQELLKAGK 184
                 2344444444444444 PP

>> Reductase_C  Reductase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.9   3.7e-05      0.22      45      81 ..      47      83 ..      21      86 .. 0.91
   2 ?   -1.5   0.0      0.64   3.8e+03      53      70 ..     170     187 ..     163     193 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.7e-05
                 EEEEEES-HHHHHHHHHHTTTT----HHHHH-TTS-H CS
  Reductase_C 45 vaveavnrprdlmaarrliaagasvdpaalaDpavdL 81
                 vav+  n+ rd+ +ar  + +g++ ++++l+D+a +L
   CTQ30063.1 47 VAVQGANAMRDIQFARLALFHGQPDSAKKLTDDAAAL 83
                 89*******************************9987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.64
                  HHHHHHHHHHTTTT---- CS
  Reductase_C  53 prdlmaarrliaagasvd 70 
                   +++++a++l++ag+  +
   CTQ30063.1 170 RKAVAQAQELLKAGKYYE 187
                  456788888888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1577.19
//
Query:       CTQ30064.1  [L=191]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-20   73.3  29.2    2.5e-10   40.5  13.2    3.1  3  DUF308         Short repeat of unknown function (DUF308)
  ------ inclusion threshold ------
       0.17   11.7  28.3       0.16   11.8  20.0    2.1  2  7TMR-DISM_7TM  7TM diverse intracellular signalling
       0.29    9.4  11.5      0.027   12.8   6.5    1.6  2  DUF2070        Predicted membrane protein (DUF2070)
        7.5    6.9  17.2        0.4   11.0   1.3    3.1  3  DUF3040        Protein of unknown function (DUF3040)
        7.8    4.6  13.4        9.6    4.3  13.4    1.2  1  YfhO           Bacterial membrane protein YfhO


Domain annotation for each model (and alignments):
>> DUF308  Short repeat of unknown function (DUF308)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5  13.2   6.9e-14   2.5e-10       1      72 [.      26      97 ..      26      98 .. 0.96
   2 !   38.3  10.5   3.4e-13   1.2e-09       2      71 ..      85     152 ..      84     154 .. 0.92
   3 !   10.6   2.0   0.00015      0.53       6      42 ..     146     182 ..     146     190 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 6.9e-14
      DUF308  1 llGillivlGilalllPvaallalvllfGilllvsGivqiiaafaarkknrggrwlglllGilyliaGllll 72
                l+++ll ++G+++l++P++a+ +l+++ G+ll++ G++++++ + +r+++ ++r++ l+++i  +++Gl ++
  CTQ30064.1 26 LMAVLLFICGACCLAWPLVAGWYLATVTGMLLMICGFYSLYSLIVFRQQHWKSRLVALIFAIAWIVLGLSFV 97
                589*****************************************99999999*****************997 PP

  == domain 2  score: 38.3 bits;  conditional E-value: 3.4e-13
      DUF308   2 lGillivlGilalllPvaallalvllfGilllvsGivqiiaafaarkknrggrwlglllGilyliaGlll 71 
                  +i  ivlG+ ++++P++ ++ l++lfG+l++++Gi +i+++ ++rk+++ g  + +++G+l l++++l 
  CTQ30064.1  85 FAIAWIVLGLSFVVNPLNGMSSLAILFGFLFVLGGISRIVNGCQTRKQSGAG--WNIFIGLLDLLIACLW 152
                 57999**************************************999977765..89**********9875 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00015
      DUF308   6 livlGilalllPvaallalvllfGilllvsGivqiia 42 
                 l+++ +++ ++P+ + l+++ ++G+ +++s+i+ ++ 
  CTQ30064.1 146 LLIACLWLAMNPQQSWLFITAFIGVEMIFSAIGLLVL 182
                 5788899*************************99974 PP

>> 7TMR-DISM_7TM  7TM diverse intracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  20.0   4.5e-05      0.16      83     192 ..       7     114 ..       1     124 [. 0.53
   2 ?    4.7   1.3    0.0067        24     102     151 ..     139     188 ..     127     191 .] 0.49

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.5e-05
  7TMR-DISM_7TM  83 Farsflelkkkp......rllklllllavllsllllllpllpyteslslaq...llallvillllligikaw...rkgnkparyfliawlllligv 166
                    ++ + ++    +      r   l+ +l++++++++l+ pl+     ++la+   +l++++ +++l+++i+     +k +  a +f+iaw++l +++
     CTQ30064.1   7 YTLNAFSP---RvfirykRHACLMAVLLFICGACCLAWPLV---AGWYLATvtgMLLMICGFYSLYSLIVFRqqhWKSRLVALIFAIAWIVLGLSF 96 
                    33333333...123422245555555555555555555555...555555522244444444444444444477799999**************** PP

  7TMR-DISM_7TM 167 lidilsllgllpsnffteyllqigvl 192
                    +++   l+g+ +        + +g+l
     CTQ30064.1  97 VVNP--LNGMSSLA------ILFGFL 114
                    *966..33433333......333333 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0067
  7TMR-DISM_7TM 102 llavllsllllllpllpyteslslaqllallvillllligikawrkgnkp 151
                    ++  ll ll+++l l + +++++l++   + v +++ +ig++++r++ k 
     CTQ30064.1 139 IFIGLLDLLIACLWLAMNPQQSWLFITAFIGVEMIFSAIGLLVLRNKMKH 188
                    33333344444444554444444444333334444444555555666555 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.7     0.063   2.3e+02      59     115 ..       9      67 ..       2      70 .. 0.64
   2 ?   12.8   6.5   7.6e-06     0.027       4     112 ..      66     180 ..      62     184 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.063
     DUF2070  59 lrilggr..ltykrslflalltelivviisllaillsallqalvllalvlslalvfalr 115
                 l+ ++ r  + ykr++ l+++ ++i+ +  l+  l++ +  a v+ +l++ + ++  ++
  CTQ30064.1   9 LNAFSPRvfIRYKRHACLMAVLLFICGACCLAWPLVAGWYLATVTGMLLMICGFYSLYS 67 
                 55555555688999988888888888887777777776665556666655555555544 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 7.6e-06
     DUF2070   4 lskyifrlPswk.vsllliillalligllaflssk..lfgillfglpalvaflltlpvlrilggrltykrs.....lflalltelivviisllaillsa 94 
                 +s ++fr  +wk + ++li+ +a ++  l+f +++   +++l++++ +l+ +   +++++      t k+s     +f+ ll +li+++++ +    s+
  CTQ30064.1  66 YSLIVFRQQHWKsRLVALIFAIAWIVLGLSFVVNPlnGMSSLAILFGFLFVLGGISRIVNGC---QTRKQSgagwnIFIGLLDLLIACLWLAMNPQQSW 161
                 56689*******99999999999999999999999444444555555555555555555555...55555555566*************9999999998 PP

     DUF2070  95 ll.qalvllalvlslalvf 112
                 l+ +a++   +++s +  +
  CTQ30064.1 162 LFiTAFIGVEMIFSAIGLL 180
                 8876666666666644444 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.3   0.00011       0.4      38      82 ..      20      62 ..       8      64 .. 0.78
   2 ?    4.1   3.4     0.016        58      41      82 ..      79     120 ..      68     122 .. 0.67
   3 ?   -0.1   3.5      0.31   1.1e+03      46      78 ..     109     149 ..     104     182 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
     DUF3040 38 rrslrrlavlavllfvaGllllvlGvaaaavvlgvvGfvvmlagv 82
                ++  r++ ++avllf++G+++l   ++a   +  v+G+++m+ g+
  CTQ30064.1 20 YK--RHACLMAVLLFICGACCLAWPLVAGWYLATVTGMLLMICGF 62
                33..788999***********998855555688999**9999886 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.016
     DUF3040  41 lrrlavlavllfvaGllllvlGvaaaavvlgvvGfvvmlagv 82 
                 +  +++ a++ +v+Gl ++v  +   + + +++Gf+ +l+g+
  CTQ30064.1  79 RLVALIFAIAWIVLGLSFVVNPLNGMSSLAILFGFLFVLGGI 120
                 344566677777777777777644444799999**9999885 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.31
     DUF3040  46 vlavllfva.GllllvlGvaaaa.......vvlgvvGfvvm 78 
                 +l   lfv+ G+  +v G  +++       + +g++ ++++
  CTQ30064.1 109 ILFGFLFVLgGISRIVNGCQTRKqsgagwnIFIGLLDLLIA 149
                 44445555556666777733333467644444444444444 PP

>> YfhO  Bacterial membrane protein YfhO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  13.4    0.0027       9.6     288     414 ..      61     182 ..      17     189 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0027
        YfhO 288 pllllilyFvlkkiklkeklafallllllilsfllpplnlvwhgfqaPvgfpyRfsfilsflllllaaealkelkqlk.klkllaailllvlllliill 385
                 ++  l  ++v ++ ++k++l+++++ +  i+ + l ++   ++g+++ +     f f++ +  +  ++ + + +kq +  +++++++l l l+++++l 
  CTQ30064.1  61 GFYSLYSLIVFRQQHWKSRLVALIFAIAWIV-LGLSFVVNPLNGMSSLA---ILFGFLFVLGGISRIVNGCQTRKQSGaGWNIFIGLLDL-LIACLWLA 154
                 4455666789999999999998888776666.77777777889******...99**********************97667666665544.44445565 PP

        YfhO 386 lknkksynfltssqlllgllllllallll 414
                 +++++s  f+t  ++ + +++  ++ll+l
  CTQ30064.1 155 MNPQQSWLFITA-FIGVEMIFSAIGLLVL 182
                 777777788876.8899999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1074  (0.059903); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 1439.17
//
Query:       CTQ30065.1  [L=101]
Description: Acid-resistance protein (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-23   81.9   0.7    3.1e-23   81.7   0.7    1.0  1  HdeA         HdeA/HdeB family
  ------ inclusion threshold ------
       0.11   12.9   0.1        2.9    8.3   0.0    2.3  2  ZF-HD_dimer  ZF-HD protein dimerisation region
       0.11   11.8   0.0       0.17   11.2   0.0    1.3  2  CmlA_N       Diiron non-heme beta-hydroxylase N-terminal doma


Domain annotation for each model (and alignments):
>> HdeA  HdeA/HdeB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.7   5.3e-27   3.1e-23       4      91 ..       9      93 ..       6      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 5.3e-27
                XXXXXXX..XXXXXXXXGGG.XSCCS-GGG-BHHHHHTS-GGGHHHHHHHHHHTTSCCSGCCCCSHHHHHHHHHHHHHHHHHHTTTSBGG CS
        HdeA  4 laalala..alsssAlAqkaaakakkdlskmtCedFldldeeskpkviywvegynskgkkgdavvdeegiekvtpkvveyCkknpkkkll 91
                l+++a    +++s A+A ++ ++++    +mtC++F+d++++s+++v++wv++ n+++++gd+v+++e+ +  +pk+ ++C+knp +kl 
  CTQ30065.1  9 LTVAATTfcLMTSPAFAVEE-TTPQ----NMTCQEFMDMNPKSMTPVAFWVVNRNTDFSGGDYVDWHEVETVSVPKMLQECHKNPAAKLG 93
                44554445579********8.5666....**********************************************************985 PP

>> ZF-HD_dimer  ZF-HD protein dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.037   2.2e+02      23      29 ..      36      42 ..      24      52 .. 0.73
   2 ?    8.3   0.0   0.00049       2.9       5      17 ..      82      94 ..      79      97 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.037
  ZF-HD_dimer 23 CgeFmas 29
                 C+eFm  
   CTQ30065.1 36 CQEFMDM 42
                 8888874 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00049
  ZF-HD_dimer  5 keClrNhaaslGg 17
                 +eC +N aa+lG+
   CTQ30065.1 82 QECHKNPAAKLGD 94
                 7***********7 PP

>> CmlA_N  Diiron non-heme beta-hydroxylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.32   1.9e+03      45      72 ..      21      48 ..      14      56 .. 0.71
   2 ?   11.2   0.0   2.8e-05      0.17      52      90 ..      55      93 ..      33     101 .] 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.32
      CmlA_N 45 apevheaalknpkllGgpfvdleeerve 72
                +p++ ++ +  ++++  +f+d++ ++++
  CTQ30065.1 21 SPAFAVEETTPQNMTCQEFMDMNPKSMT 48
                5666666777777777888887776665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 2.8e-05
      CmlA_N 52 alknpkllGgpfvdleeerveevrallektkkeqadlle 90
                + +n +++Gg++vd +e ++  v ++l++ +k+ a++l 
  CTQ30065.1 55 VNRNTDFSGGDYVDWHEVETVSVPKMLQECHKNPAAKLG 93
                56899**************************99998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.28s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 761.46
//
Query:       CTQ30066.1  [L=267]
Description: glycerol facilitator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-69  231.8  14.9    9.2e-69  231.6  14.9    1.0  1  MIP       Major intrinsic protein
  ------ inclusion threshold ------
       0.35   10.5  33.6        2.8    7.5  20.4    3.2  2  TauE      Sulfite exporter TauE/SafE


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.6  14.9     1e-72   9.2e-69       3     227 .]       3     251 ..       1     251 [. 0.97

  Alignments for each domain:
  == domain 1  score: 231.6 bits;  conditional E-value: 1e-72
                 CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHH CS
         MIP   3 ssvkflravlAEflatlllvfigvgsalnvkkkvsslaslvsvtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQll 101
                 ++++++ +++AEfl+t ll+f+g g+++++  + +s++     ++e +++ +gl++a+++yl+ag+SGaHlNPavT+al+++++++ ++++ +ivaQ +
  CTQ30066.1   3 QTSTLTGQCVAEFLGTGLLIFFGAGCVAALRVAGASFG-----QWE-ISIIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFERRKVLPFIVAQTA 95 
                 5678899*********************9999998855.....665.5566************************************************ PP

                 HHHHHHHHHHHHCHHH.................HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHHH CS
         MIP 102 Gaivaaallklltkgl.................esraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilvg 183
                 Ga++aaal+++l+ +l                  + ag f+++++p+++++qa++vE  +t++L+++++altdd +   +g lapl+igll+a+i +++
  CTQ30066.1  96 GAFCAAALVYGLYRQLfldleqsqhiargtaasLNLAGVFSTYPHPHITFIQAFAVETTITAILMAMIMALTDDGNGIPRGPLAPLLIGLLIAVIGASM 194
                 *******************************99999*************************************************************** PP

                 HHHHST-SSHHHHHHHHHHHTH.............STTTTHHHHHHHHHHHHHHHHH CS
         MIP 184 ipltGaamNpArslgpavvlnk.............fedhwvylvGPliGailgalvY 227
                 +pltG+a+NpAr++gp++++               + +++v+l++P++Gai+ga++Y
  CTQ30066.1 195 GPLTGFALNPARDFGPKLFTSLagwgsiaftgglaIPYFLVPLLAPVVGAIIGAFLY 251
                 ********************999********************************99 PP

>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   8.1     0.011     1e+02     157     217 ..       7      68 ..       4      81 .. 0.56
   2 ?    7.5  20.4   0.00031       2.8      67     220 ..      87     258 ..      70     260 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.011
        TauE 157 llglplkkavatslllilvislagalgyalagavdwpllllllpgallGallGarl.arrls 217
                 l+g+ + ++ +t ll+++  + ++al  a a   +w++ ++ ++g++  ++l a +   +l+
  CTQ30066.1   7 LTGQCVAEFLGTGLLIFFGAGCVAALRVAGASFGQWEISIIWGLGVAMAIYLTAGVsGAHLN 68 
                 56777888888888888888888888875544444666666444444444443332012222 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00031
        TauE  67 lllllgsliGallGallllllpsel.................................lkllfgvlllllallmll.rkkrsrakgrerrptaillvli 131
                 l+++++  +Ga+ +a l+  l  +l                                 +  +f+v  +++a+lm++ ++   + +g+  ++++++ +li
  CTQ30066.1  87 LPFIVAQTAGAFCAAALVYGLYRQLfldleqsqhiargtaaslnlagvfstyphphitFIQAFAVETTITAILMAMiMAL--TDDGNGIPRGPLAPLLI 183
                 44444444444444444444444433444444444444444444444444444444458888999999999999654665..56677889999989999 PP

        TauE 132 gglvGllsGllGiGgGfllvpllllllglplkkavatslllilvislagalgyalagavdwpllllllpgallGallGarlarrlsert 220
                 g+l++++++ +G  +Gf l p+    + + +k ++ ++             + a++g + +p++l+ l++ ++Ga++Ga l r+l  r+
  CTQ30066.1 184 GLLIAVIGASMGPLTGFALNPA----RDFGPKLFTSLAGW----------GSIAFTGGLAIPYFLVPLLAPVVGAIIGAFLYRKLIGRH 258
                 8889999999999999977776....56677765444433..........333334555566666666677777777777777765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2065.63
//
Query:       CTQ30067.1  [L=607]
Description: Diol dehydratase-reactivating factor alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.1e-155  516.7   7.4   3.6e-155  515.9   7.4    1.4  1  DDR              Diol dehydratase reactivase ATPase-like doma
    4.7e-71  238.0   0.4      1e-70  236.9   0.4    1.6  1  DDR_swiveling    DD-reactivating factor swiveling domain
    0.00034   20.2   0.5       0.27   10.7   0.2    2.5  2  BcrAD_BadFG      BadF/BadG/BcrA/BcrD ATPase family
     0.0046   17.4   3.7          2    8.9   0.3    3.0  3  FtsA             Cell division protein FtsA
      0.007   15.8   0.7        0.1   12.0   0.1    2.2  2  Ppx-GppA         Ppx/GppA phosphatase family
  ------ inclusion threshold ------
      0.063   13.3   0.2       0.17   11.9   0.2    1.7  1  Methyltransf_17  S-adenosyl-L-methionine methyltransferase


Domain annotation for each model (and alignments):
>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  515.9   7.4  1.2e-158  3.6e-155       2     326 ..     278     602 ..     277     604 .. 0.99

  Alignments for each domain:
  == domain 1  score: 515.9 bits;  conditional E-value: 1.2e-158
         DDR   2 dvdegaekimeaveevekiedirgeagtnvggmlervrevmaeltekkvedikikDllavdtlvpqkvkgglAgefslekavglaamvktdklqmqkia 100
                 dv+egae+im+a++++++++dirge+gt++ggmlervr+vma+lt+++++ i i+Dllavdt++p kv+gg+Age ++e+avg+aamvk+d+lqmq ia
  CTQ30067.1 278 DVAEGAEAIMQAMSACAPVRDIRGEPGTHAGGMLERVRKVMASLTGHEMSAIYIQDLLAVDTFIPRKVQGGMAGECAMENAVGMAAMVKADRLQMQVIA 376
                 89************************************************************************************************* PP

         DDR 101 eeleeelgvkvevggvEaemAilGalttPGtekplailDlGaGstDaalieeegevkavhlAGAGemvtlliaseLgledrelaEdiKkyplakveslf 199
                 +el+++l+++v vggvEa+mAi GalttPG  +plailDlGaGstDaa++++eg+++avhlAGAG+mv+lli++eLgled +laE iKkyplakveslf
  CTQ30067.1 377 RELSARLQTEVVVGGVEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQITAVHLAGAGNMVSLLIKTELGLEDLSLAEAIKKYPLAKVESLF 475
                 *************************************************************************************************** PP

         DDR 200 hireEdgtvqFfdkpldpevfarvvllkedelvpleedlslekirsvRreaKekvfvtnalRalkkvsptgnirdidfvvlvGgsalDfEipelvtdal 298
                 +ir+E+g+v+Ff ++l+p vfa+vv +ke+elvp+++  +lekir vRr+aKekvfvtn+lRal++vsp g+irdi fvvlvGgs+lDfEip+l+t+al
  CTQ30067.1 476 SIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEAL 574
                 *************************************************************************************************** PP

         DDR 299 aeygivaGrgnirgveGpRnAvAtGLvl 326
                 ++yg+vaG+gnirg+eGpRnAvAtGL+l
  CTQ30067.1 575 SHYGVVAGQGNIRGTEGPRNAVATGLLL 602
                 **************************87 PP

>> DDR_swiveling  DD-reactivating factor swiveling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.9   0.4   3.4e-74     1e-70       1     162 []      92     256 ..      92     256 .. 0.96

  Alignments for each domain:
  == domain 1  score: 236.9 bits;  conditional E-value: 3.4e-74
  DDR_swiveling   1 itestmiGhnPstPgGlGlgvGetvkleelekak...keeevivvvpkevdfeeaaklinealekgvkikgailqkddgvlvenrlekkiPivdev 93 
                    itestmiGhnP+tPgG+G+gvG+t++l +l++       e +iv++++ vdf +a   +neal++g+++ +ail+kddgvlv+nrl+k++P+vdev
     CTQ30067.1  92 ITESTMIGHNPQTPGGVGVGVGTTIALGRLATLPaaqYAEGWIVLIDDAVDFLDAVWWLNEALDRGINVVAAILKKDDGVLVNNRLRKTLPVVDEV 187
                    8************************9988877651115667******************************************************* PP

  DDR_swiveling  94 slidkvPlgmlaavevaekGkvietlsnpygiatlfelsaeetkkivPvaraliGnrsavviktPkGdv 162
                    +l+++vP+g++aaveva++G+v++ lsnpygia++f ls+eet++ivP+araliGnrsavv+ktP+Gdv
     CTQ30067.1 188 TLLEQVPEGVMAAVEVAAPGQVVRILSNPYGIASFFGLSPEETQAIVPIARALIGNRSAVVLKTPQGDV 256
                    ********************************************************************8 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.2   9.1e-05      0.27       2      78 ..       6      85 ..       5     104 .. 0.76
   2 !    7.2   0.0    0.0011       3.2       4      58 ..     415     545 ..     414     585 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.1e-05
                 EEEE-SSEEEEEEEETTTEEEEEEEE--TTS-HHH.........H...HHHHHHHHHT--GGGECEE..E..EESTTCCCTC CS
  BcrAD_BadFG  2 GiDgGsTttkavlmdekgevlgrgitnsanlesvrfeaaekvlee...altealerageeeadieetylv..gtgyGratlp 78
                 GiD+G  tt ++l  ++ +  +r++  s  +  ++ ++ ++++ +   al++al+++  + +d+ ++yl   +  +G++  +
   CTQ30067.1  6 GIDIGNATTEVALASDDPQ--ARAFVASGIVATTGMKGTRDNIAGtlaALEQALAKTPWSMSDVSRIYLNeaAPVIGDVAME 85
                 9******************..8999999999999999999999863337788888888888888888885113456666655 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0011
                  EE-SSEEEEEEEETTTEEEEEEEE--........................................................................ CS
  BcrAD_BadFG   4 DgGsTttkavlmdekgevlgrgitns........................................................................ 29 
                  D+G+++t a++++ +g++ +  ++++                                                                        
   CTQ30067.1 415 DLGAGSTDAAIVNAEGQITAVHLAGAgnmvslliktelgledlslaeaikkyplakveslfsirhengaveffrealspavfakvvyikegelvpidn 512
                  *******************9999999888888888888888888888888888888888888888888888888888888888888888888877777 PP

                  ....TTS-HHH.........HHHHHHHHHHT-- CS
  BcrAD_BadFG  30 ....anlesvrfeaaekvleealtealeragee 58 
                      ++++ vr++a+ekv ++    al++    
   CTQ30067.1 513 asplEKIRLVRRQAKEKVFVTNCLRALRQVSPG 545
                  777777777777777777777777777766554 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.3   0.00067         2       1      38 [.       5      47 ..       5     115 .. 0.78
   2 ?   -1.7   0.0       1.3   3.9e+03      22      54 ..     257     289 ..     238     383 .. 0.55
   3 !    8.7   0.0   0.00078       2.3       1      57 [.     412     468 ..     412     599 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00067
                EEEEE-SSSEEEEEEETTEEEE....EEEES--HHHHHHH.HH CS
                xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx.xx RF
        FtsA  1 alvDiGagktdvavaedgalvh....lrvigvggngitkd.ia 38
                a++DiG+ +t+va+a+d+  +     + ++ + g   t+d ia
  CTQ30067.1  5 AGIDIGNATTEVALASDDPQARafvaSGIVATTGMKGTRDnIA 47
                79***************76333555577777755444555333 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.3
                 EEEEES--HHHHHHHHHHHHT--HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  22 hlrvigvggngitkdiakalrtaveeAerikik 54 
                 ++rvi+ g   i+ +  ++     e Ae i   
  CTQ30067.1 257 QSRVIPAGNLYISGEKRRGEADVAEGAEAIMQA 289
                 466666666666666555555555555555522 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00078
                 EEEEE-SSSEEEEEEETTEEEEEEEES-..-HHHHHHHHHHHHT--.HHHHHHHHHHH-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        FtsA   1 alvDiGagktdvavaedgalvhlrvigv..ggngitkdiakalrta.veeAerikikyGs 57 
                 a++D+Gag+td+a+++ ++   ++ + +  +gn ++  i++ l+   ++ Ae ik ky  
  CTQ30067.1 412 AILDLGAGSTDAAIVNAEGQ--ITAVHLagAGNMVSLLIKTELGLEdLSLAEAIK-KYPL 468
                 78************998643..333333336666666677777543377788887.3333 PP

>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.041   1.2e+02     117     204 ..       7      93 ..       4     102 .. 0.85
   2 !   12.0   0.1   3.5e-05       0.1      86     132 ..     383     429 ..     366     478 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.041
                 EEEETTEEEEEEEETTEEEEEEEES--CCHHHHHHSGCCC--HHHHHHHHHHHHHHCTTTHHHHCCCE.HHCCCCCCCHCCHHCHHHHH CS
    Ppx-GppA 117 iDiGGGStElvlgeekevsklvSlplGavrlterfltddpltkeeveaarkavekeleevkdevkkeg.ewtrlvgtsgtisalaelte 204
                 iDiG + tE++l+ + ++++      G+v  t +  t d++    ++a+++a++k +  ++d  ++ + e++ ++g + ++ +  ++ +
  CTQ30067.1   7 IDIGNATTEVALA-SDDPQARAFVASGIVATTGMKGTRDNIA-GTLAALEQALAKTPWSMSDVSRIYLnEAAPVIGDVAMETITETIIT 93 
                 8***********9.778888888889***9999999999876.5689999999999999999999999889999999999888777665 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.5e-05
                 S-EEEE-HHHHHHHHHHHHHHHT---SSEEEEEEETTEEEEEEEETT CS
    Ppx-GppA  86 lkveiisgeeEarliylgvvssllekgrglviDiGGGStElvlgeek 132
                 l+ e++ g  Ea ++++g+  +   +++  ++D+G GSt+ ++++ +
  CTQ30067.1 383 LQTEVVVGGVEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAE 429
                 7889**************************************99543 PP

>> Methyltransf_17  S-adenosyl-L-methionine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   5.7e-05      0.17      72     152 ..     384     465 ..     367     467 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.7e-05
                      GGGEEES-HHHHHH.H..HHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS----SS-EEE---TT--T CS
  Methyltransf_17  72 eedlllGeieetle.a..lakigakaalvhaDlGtgykekdavtatrlsdliagllapgGlavsgqpldheeleelplpesike 152
                      + ++++G +e  ++ a  l++ g+ a l+  DlG g ++   v+a    +++a +la  G +vs +  +  +le+l+l e ik+
       CTQ30067.1 384 QTEVVVGGVEANMAiAgaLTTPGCAAPLAILDLGAGSTDAAIVNA--EGQITAVHLAGAGNMVSLLIKTELGLEDLSLAEAIKK 465
                      66778887765432124499****************876666555..589**************99888899999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4850.45
//
Query:       CTQ30068.1  [L=141]
Description: Glycerol dehydratase small subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-60  200.6   0.3    9.8e-60  200.4   0.3    1.0  1  Dehydratase_SU  Dehydratase small subunit
  ------ inclusion threshold ------
      0.016   14.6   0.3      0.035   13.5   0.3    1.6  1  HTH_Tnp_ISL3    Helix-turn-helix domain of transposase family


Domain annotation for each model (and alignments):
>> Dehydratase_SU  Dehydratase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.4   0.3   1.1e-63   9.8e-60       2     133 .]       7     138 ..       6     138 .. 0.99

  Alignments for each domain:
  == domain 1  score: 200.4 bits;  conditional E-value: 1.1e-63
  Dehydratase_SU   2 taedyPlaekrpelvktktgksldditlekvlsgkvkaedlritpetLelqaqiAesagrkqlaknlrRaaElvkvpderileiYnalrPyrstk 96 
                     +++dyPla+++pe++ t+tgk l+ditlekvlsg+v ++d+ri+++tLe+qaqiAe+++r+++a+n+rRaaEl+++pderil+iYnalrP+rs++
      CTQ30068.1   7 RVQDYPLATRCPEHILTPTGKPLTDITLEKVLSGEVGPQDVRISRQTLEYQAQIAEQMQRHAVARNFRRAAELIAIPDERILAIYNALRPFRSSQ 101
                     689******************************************************************************************** PP

  Dehydratase_SU  97 eellaiadeleekYeakvnaalvreaaevYekrkklk 133
                     +ellaiadele++++a+vnaa+vre+aevY++r+kl+
      CTQ30068.1 102 AELLAIADELEHTWHATVNAAFVRESAEVYQQRHKLR 138
                     ***********************************97 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   3.9e-06     0.035      10      50 ..      50      93 ..      48      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.9e-06
  HTH_Tnp_ISL3 10 sriTlrleayilellles...rsvkavArqlgvSwtTVwrildr 50
                  sr+Tl ++a+i+e+++++   r+++ +A++  + + ++  i+++
    CTQ30068.1 50 SRQTLEYQAQIAEQMQRHavaRNFRRAAELIAIPDERILAIYNA 93
                  79****************99999999**9999999999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1173.79
//
Query:       CTQ30069.1  [L=194]
Description: Glycerol dehydratase medium subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-36  123.0   0.0    7.5e-36  122.3   0.0    1.3  1  Dehydratase_MU  Dehydratase medium subunit


Domain annotation for each model (and alignments):
>> Dehydratase_MU  Dehydratase medium subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.0   4.2e-40   7.5e-36       2     108 ..      36     148 ..      35     149 .. 0.95

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 4.2e-40
  Dehydratase_MU   2 Paivilvskeie....eevlrevlaGiEEegvpyevv.veetsdvaelAhqAaklSrlgvGigiqskgtvvihqkklpeesplellsq.pladke 90 
                     Pa+  ++++++      ++l+e++aG+EEeg++++vv + +tsdv+++A++Aa+lS++g+Gigiqskgt+vihq++l ++s+lel+sq pl + e
      CTQ30069.1  36 PAFDKHQHHTLIdmphGAILKELIAGVEEEGLHARVVrILRTSDVSFMAWDAANLSGSGIGIGIQSKGTTVIHQRDLLPLSNLELFSQaPLLTLE 130
                     778888888877788889***************************************************************************** PP

  Dehydratase_MU  91 tlRalGanAArlvkgepf 108
                     t+R++G+nAAr++++e++
      CTQ30069.1 131 TYRQIGKNAARYARKESP 148
                     ***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1478.71
//
Query:       CTQ30070.1  [L=555]
Description: Glycerol dehydratase large subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
          0 1034.8   3.2          0 1034.6   3.2    1.0  1  Dehydratase_LU  Dehydratase large subunit


Domain annotation for each model (and alignments):
>> Dehydratase_LU  Dehydratase large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1034.6   3.2         0         0       1     551 [.       2     552 ..       2     553 .. 1.00

  Alignments for each domain:
  == domain 1  score: 1034.6 bits;  conditional E-value: 0
  Dehydratase_LU   1 krskrfevlekrpvnkdgfvkewpevGlvamespndPkpsikiengkvveldgkkredfdlidefiadyaidlevaeeamaldslelarmlvdin 95 
                     krskrf vl++rpvn+dg++ ewpe+Gl+am+sp dP +s+k++ng +veldgk+r++fd+id+fiadyai++e++e+am l+++e+armlvdi+
      CTQ30070.1   2 KRSKRFAVLAQRPVNQDGLIGEWPEEGLIAMDSPFDPVSSVKVDNGLIVELDGKRRDQFDMIDRFIADYAINVERTEQAMRLEAVEIARMLVDIH 96 
                     69********************************************************************************************* PP

  Dehydratase_LU  96 vsreevvkltkgltpaklvevvsklnvvelmmalqkmrarktpanqahvtnlkdnpvqiaadaaeaalrGfaelettvgvvryaplnalallvGs 190
                     vsree++++t+++tpak vev++++nvve+mmalqkmrar+tp+nq+hvtnlkdnpvqiaadaaea +rGf+e+ettvg++ryap+nalallvGs
      CTQ30070.1  97 VSREEIIAITTAITPAKAVEVMAQMNVVEMMMALQKMRARRTPSNQCHVTNLKDNPVQIAADAAEAGIRGFSEQETTVGIARYAPFNALALLVGS 191
                     *********************************************************************************************** PP

  Dehydratase_LU 191 qvgrpGvltqcaveeatelelgmrgltayaetvsvyGtekvfvdGddtPwskafLasayasrGlkmrftsgtGsevqmGaaegksmlyLearCil 285
                     q+grpGvltqc+veeatelelgmrglt+yaetvsvyGte vf+dGddtPwskafLasayasrGlkmr+tsgtGse +mG++e+ksmlyLe+rCi+
      CTQ30070.1 192 QCGRPGVLTQCSVEEATELELGMRGLTSYAETVSVYGTEAVFTDGDDTPWSKAFLASAYASRGLKMRYTSGTGSEALMGYSESKSMLYLESRCIF 286
                     *********************************************************************************************** PP

  Dehydratase_LU 286 vtkgaGvqGlqnGsvscigvpaavPsGiravlaenliaalldlevasgndqtfshsdlrrtartllqllpGtdfifsGyssvpnydnmfagsnfd 380
                     +tkgaGvqGlqnG+vscig+++avPsGiravlaenlia++ldlevas+ndqtfshsd+rrtartl+q+lpGtdfifsGys+vpnydnmfagsnfd
      CTQ30070.1 287 ITKGAGVQGLQNGAVSCIGMTGAVPSGIRAVLAENLIASMLDLEVASANDQTFSHSDIRRTARTLMQMLPGTDFIFSGYSAVPNYDNMFAGSNFD 381
                     *********************************************************************************************** PP

  Dehydratase_LU 381 aedlddylvlqrdlkvdgglrpvkeeeviavrnkaaralqavfeelglpeitdeeveaatyaegskdlperdvvedlkaaeellergitgldivk 475
                     aed+ddy++lqrdl+vdgglrpv+e e ia+r+kaara+qavf+elglp+i deeveaatya+gs+++p r+vvedl+a+ee+++r+itgldiv 
      CTQ30070.1 382 AEDFDDYNILQRDLMVDGGLRPVTEAETIAIRQKAARAIQAVFRELGLPPIADEEVEAATYAHGSNEMPPRNVVEDLSAVEEMMKRNITGLDIVG 476
                     *********************************************************************************************** PP

  Dehydratase_LU 476 aLakkgfedvaenilnllkqrvsGdylqtsaildedfnvlsavndkndyaGpgtGyrlseerweeiknirqaldpe 551
                     aL+++gfed+a+niln+l+qrv+Gdylqtsaild++f+v+savnd ndy+GpgtGyr+s+erw+eikni+ +++p+
      CTQ30070.1 477 ALSRSGFEDIASNILNMLRQRVTGDYLQTSAILDRQFEVVSAVNDINDYQGPGTGYRISAERWAEIKNIPGVVQPD 552
                     **********************************************************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4156.06
//
Query:       CTQ30071.1  [L=142]
Description: Uncharacterized 15.0 kDa protein in dhaT-dhaS intergenic region [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-30  104.0   0.8    5.8e-30  103.8   0.8    1.0  1  Haem_degrading  Haem-degrading
  ------ inclusion threshold ------
      0.032   13.9   1.1      0.039   13.6   0.2    1.7  2  Diacid_rec      Putative sugar diacid recognition
       0.14   12.2   0.0       0.25   11.4   0.0    1.4  1  DUF4715         Domain of unknown function (DUF4715)


Domain annotation for each model (and alignments):
>> Haem_degrading  Haem-degrading
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.8   9.7e-34   5.8e-30       1     118 [.      10     136 ..      10     137 .. 0.92

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 9.7e-34
  Haem_degrading   1 ltledAkelgaaarakarekgkpvviaivdaggqllffarmdgaspdnedwaerKantaarfgkstaalgeklk.....eedya......grv.i 83 
                     +tl++A++++aa+++ka e +++vv+++vd+gg++l+ +rmd a + + d++ +Ka++a ++++ t+++  +++                +r+ i
      CTQ30071.1  10 ITLAAAQKMAAAVQKKATEIKVAVVFSVVDHGGNTLLIQRMDEAFVSSCDISLNKAWSACSLKQGTHEITSAVQpgqslY---GlqltnqQRIiI 101
                     699***********************************************************************764440...26666667889* PP

  Haem_degrading  84 lgGGvpirvkggvvGaigvSGlkqeeDhqvavaal 118
                     +gGG+p+  +++v+Ga+gvSG++ e+D+ +a+ al
      CTQ30071.1 102 FGGGLPVIFNEQVIGAVGVSGGTVEQDQLLAQCAL 136
                     *******99**********************9876 PP

>> Diacid_rec  Putative sugar diacid recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.48   2.9e+03      15      15 ..      24      24 ..       5      54 .. 0.58
   2 ?   13.6   0.2   6.5e-06     0.039      72      93 ..     103     124 ..      73     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.48
  Diacid_rec 15 e 15
                +
  CTQ30071.1 24 K 24
                1 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 6.5e-06
  Diacid_rec  72 GinlpivfngevvGviGitGep 93 
                 G  lp++fn++v+G++G++G  
  CTQ30071.1 103 GGGLPVIFNEQVIGAVGVSGGT 124
                 6679***************965 PP

>> DUF4715  Domain of unknown function (DUF4715)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.2e-05      0.25      15      50 ..      43      78 ..      32      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.2e-05
     DUF4715 15 ntlqgkkmvesglqsgdfslseslssclpsqadlei 50
                ntl  ++m e+ + s d+sl++++s+c   q   ei
  CTQ30071.1 43 NTLLIQRMDEAFVSSCDISLNKAWSACSLKQGTHEI 78
                99999**********************887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1140.37
//
Query:       CTQ30072.1  [L=387]
Description: 1,3-propanediol dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-128  427.9   2.4     3e-128  427.7   2.4    1.0  1  Fe-ADH     Iron-containing alcohol dehydrogenase
    6.7e-18   65.3   2.1    5.2e-16   59.1   2.1    2.1  1  Fe-ADH_2   Iron-containing alcohol dehydrogenase
    0.00054   20.3   0.1      0.027   14.8   0.0    2.4  2  Hydrolase  haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.075   13.0   0.5      0.075   13.0   0.5    1.8  2  Lamprin    Lamprin


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.7   2.4  6.6e-132    3e-128       1     364 []      11     379 ..      11     379 .. 0.97

  Alignments for each domain:
  == domain 1  score: 427.7 bits;  conditional E-value: 6.6e-132
                 -SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH..HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHH CS
      Fe-ADH   1 Ptrivfgkgaleelgellkklgakralivtdkgsl.kksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAK 98 
                 P+  +fg++a++ +ge+++ lg ++al+vtdkg+   k g++dk l  l+eagiev++fdgvepnp++++v++++a++r e++d+++ vGGGs++D++K
  CTQ30072.1  11 PNVNFFGPNAISVVGERCQLLGGEKALLVTDKGLRaIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGK 109
                 56679*****************9**********975799************************************************************ PP

                 HHHHHTT...................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHH CS
      Fe-ADH  99 aialllanp.evedylgegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEay 196
                 +i + ++++ ++ +y g+++  +++ +p++a+ TtaGt+sevt+ +v+t++e+++k++i++ + lP+++i Dp l+++ P+++taatg+Dal+ha+Eay
  CTQ30072.1 110 GIGIAATHEgDLYQYAGIETL-TNPLPPIVAVNTTAGTASEVTRHCVLTNTETKVKFVIVSWRNLPSVSINDPLLMIGKPAALTAATGMDALTHAVEAY 207
                 ********9559999988865.8999************************************************************************* PP

                 HHHT---TTSSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH..........HHH CS
      Fe-ADH 197 vskkanplsdalaleairliaknleravadgedleareqmllastlaglafsnaglgavHalahalgalfgiphglanaillpavlrfnaeaaperlaq 295
                 +sk anp++da+a++airlia+nl++ava g++l+are+m++as+lag+af+na lg vHa+ah+lg+l+++phg+ana+llp+v r+n+ a+pe++a+
  CTQ30072.1 208 ISKDANPVTDAAAMQAIRLIARNLRQAVALGSNLQARENMAYASLLAGMAFNNANLGYVHAMAHQLGGLYDMPHGVANAVLLPHVARYNLIANPEKFAD 306
                 *************************************************************************************************** PP

                 HHHT...........T--HHHHHHHHHHHHHTT---SHHHHT-TT-HHHHHHHHHT-TSGGGGSSS---HHHH CS
      Fe-ADH 296 laralgge....sdeeaaeeliealrellkelglptsLselgvdeedldklaeaalkdrslannpreltaedv 364
                 +a+ +g++    s+ +aae++i+a+ +l  ++g+p++L++lgv+e+d++ +ae alkd++   npr+ +++++
  CTQ30072.1 307 IAELMGENitglSTLDAAEKAIAAITRLSMDIGIPQHLRDLGVKEADFPYMAEMALKDGNAFSNPRKGNEQEI 379
                 ******************************************************************9998875 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   2.1   1.2e-19   5.2e-16       2     246 ..      16     282 ..      15     285 .. 0.85

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 1.2e-19
    Fe-ADH_2   2 igegaleklgellkelelkkvllvadentkka...agekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsak 97 
                 +g++a++ +ge ++ l+++k+llv+d++  ++   a +k  ++l+eagi+v++++ ve++++ ++v++ ++++r +++d++v vGgG+ +D +k +   
  CTQ30072.1  16 FGPNAISVVGERCQLLGGEKALLVTDKGLRAIkdgAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIA 114
                 689************************977772225555556789*************************************************66443 PP

    Fe-ADH_2  98 lnv..................pyvsvpTaaSvDGfaspgaslvvdgkkrtv...akaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklan 175
                 +                    p+v+v T+a   +     + l+ ++ k+ +      ++P   i D  ++   P++l+a+   D+l   +  + +k an
  CTQ30072.1 115 ATHegdlyqyagietltnplpPIVAVNTTAGTASEVTRHCVLTNTETKVKFvivSWRNLPSVSINDPLLMIGKPAALTAATGMDALTHAVEAYISKDAN 213
                 32111122222223333334467889999888888888999999977776543456789**************************************** PP

    Fe-ADH_2 176 evseplaklsaamvqeaaeklvedkketealeellealalsgigisrpaSGsEHliSHaldmlalkqalHG 246
                  v++ +a ++++ +  +++++v+ + + +a e+++ a++l+g+++ ++  G  H ++H l  l+     HG
  CTQ30072.1 214 PVTDAAAMQAIRLIARNLRQAVALGSNLQARENMAYASLLAGMAFNNANLGYVHAMAHQLGGLY--DMPHG 282
                 ************************************************************8888..66777 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     6e-06     0.027     116     177 ..      44     105 ..      25     111 .. 0.83
   2 !    5.3   0.0    0.0046        21      37     143 ..     100     241 ..      91     309 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6e-06
                 THHBHTTHH.HHHHHHHHTTEEEEEEESSEHHHHH.HHHHHTTGGGESEEEEHHCESSTTTSHH CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 116 plkvkpeaa.eavasLkaagievvlltgdnpetae.raanqlGddyfdaviasdietvakpspe 177
                  + +k++a+ +++++L++agiev++  g +p++ +  + + l    f  + + +i+tv++ sp 
  CTQ30072.1  44 LRAIKDGAVdKTLHYLREAGIEVAIFDGVEPNPKDtNVRDGLA--VFRREQCDIIVTVGGGSPH 105
                 45599***************************99955555577..8899999999999998886 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0046
                 H..HHCHHHHHHHHHHHHH..HHHHHHHHH...ETTTE...............................................HHHHTHHHHHHHHH CS
                 x..xxxxxxxxxxxxxxxx..xxxxxxxxx...xxxxx...............................................xxxxxxxxxxxxxx RF
   Hydrolase  37 g..sehpigkalvaaakar..sgaltgfat...figrg...............................................ayaigkpewltald 81 
                 g  s+h  gk +  aa ++    +++g++t                                                        ++igkp  lta +
  CTQ30072.1 100 GggSPHDCGKGIGIAATHEgdLYQYAGIETltnP---LppivavnttagtasevtrhcvltntetkvkfvivswrnlpsvsindpLLMIGKPAALTAAT 195
                 3569999999997777777564444555553330...24444444555566777777888888888889999999999999999999999999999992 PP

                 CHHHHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHTHHBHTTHH.HHHHHHHHT.TEEEEEEESS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxx RF
   Hydrolase  82 ippdlgaaigsaqsqgrtvallqaralavftiadplkvkpeaa.eavasLkaa.gievvlltgd 143
                   + l                    a++ +  +d ++v + aa +a++ + ++    v+l ++ 
  CTQ30072.1 196 GMDALTH------------------AVEAYISKDANPVTDAAAmQAIRLIARNlRQAVALGSNL 241
                 2222222..................333333333334555555444444433212223333333 PP

>> Lamprin  Lamprin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.9   8.5e+03     112     121 ..     108     117 ..      98     139 .. 0.52
   2 ?   13.0   0.5   1.7e-05     0.075      78     128 ..     248     298 ..     233     306 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.9
     Lamprin 112 gigagvvaph 121
                 g g g+ a h
  CTQ30072.1 108 GKGIGIAATH 117
                 3333333333 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.7e-05
     Lamprin  78 vythhaaglvhpygglgyhaapyhhalggl.gyplgigagvvaphvvkskva 128
                 +y+   ag+ +  + lgy  a   h lggl   p g+   v+ phv + ++ 
  CTQ30072.1 248 AYASLLAGMAFNNANLGYVHAMA-HQLGGLyDMPHGVANAVLLPHVARYNLI 298
                 7888899***********88765.567887379*************986654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2972.69
//
Query:       CTQ30073.1  [L=117]
Description: Uncharacterized 12.5 kDa protein in dhaR-dhaT intergenic region [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-24   85.6   0.0      2e-24   85.5   0.0    1.0  1  Dehydratase_MU  Dehydratase medium subunit


Domain annotation for each model (and alignments):
>> Dehydratase_MU  Dehydratase medium subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.0   1.1e-28     2e-24      14     108 ..      19     113 ..       5     114 .. 0.92

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 1.1e-28
  Dehydratase_MU  14 eevlrevlaGiEEegvpyevv.veetsdvaelAhqAaklSrlgvGigiqskgtvvihqkklpeesplellsqpladketlRalGanAArlvkgep 107
                     +  ++e+++G+EE+gvp+++   +   d+a+l+  Aa++S l+vGig++++g++++++++lp+++pl + +  ++++++lR+lGanA++lvk +p
      CTQ30073.1  19 AGAINELCWGLEEQGVPCQTItYDGGGDAAALGALAARSSPLRVGIGLSASGEIALTHAQLPADAPLATGHV-TDSDDHLRTLGANAGQLVKVLP 112
                     6789***************9989999**********************************************.9******************999 PP

  Dehydratase_MU 108 f 108
                     +
      CTQ30073.1 113 L 113
                     7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      167  (0.00931452); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.19s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 1041.48
//
Query:       CTQ30074.1  [L=176]
Description: Cob(I)yrinic acid a,c-diamide adenosyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-50  169.5   0.5    7.3e-50  169.3   0.5    1.0  1  Cob_adeno_trans  Cobalamin adenosyltransferase


Domain annotation for each model (and alignments):
>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.3   0.5   4.1e-54   7.3e-50       1     163 [.       4     167 ..       4     168 .. 0.93

  Alignments for each domain:
  == domain 1  score: 169.3 bits;  conditional E-value: 4.1e-54
                      XXXXXXXXXXXXXXXX.XXXTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHT...-BTCCG-S--HHHHHHHH CS
  Cob_adeno_trans   1 iyTrtGDkGtTslvggervsKddprveayGtvDelnsaiglarallaeeeeelkeaLeeiqneLfdlgaelatp..ekkkekkkiteeeveele 92 
                      iyTrtGDkGtT+l+gg+r++Kd++rveayGtvDel s++g++ a+++  ++ l+e L++iq+ Lf lgaela++    ++ +++i eee+++le
       CTQ30074.1   4 IYTRTGDKGTTALYGGSRIEKDHIRVEAYGTVDELISQLGVCYATTR--DAGLRESLHHIQQTLFVLGAELASDarGLTRLSQTIGEEEITALE 95 
                      9******************************************7775..569********************98764445566788999***** PP

                      HHHHHHHHHS--EESEEES-SSHHHHHHHHHHHHHHHHHHHHHHHHHHS..HHHHHHHHHHHHHHHHHHHHH CS
  Cob_adeno_trans  93 keideleaelpplksfilpggspaaaalhvaRtvcRraERavvelaeee.veeevlkylNRLSDlLfvlarv 163
                      + id+  ae  plk+f++pg + a+a+lhvaRt  Rr ER ++++ +++  ++++ +y NRLSD Lf +ar+
       CTQ30074.1  96 RLIDRNMAESGPLKQFVIPGRNLASAQLHVARTQSRRLERLLTAMDRAHpLRDALKRYSNRLSDALFSMARI 167
                      *********************************************997787899999*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1529.26
//
Query:       CTQ30075.1  [L=641]
Description: DNA-binding transcriptional regulator, dihydroxyacetone metabolism [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-36  124.3   0.1    8.4e-36  123.2   0.0    1.6  2  Sigma54_activat  Sigma-54 interaction domain
    1.9e-18   66.9   0.0      5e-18   65.6   0.0    1.7  1  Sigma54_activ_2  Sigma-54 interaction domain
    4.6e-15   55.6   0.1    2.2e-14   53.4   0.0    2.2  3  PAS              PAS fold
    4.8e-13   48.7   0.1    4.8e-13   48.7   0.1    2.2  2  HTH_8            Bacterial regulatory protein, Fis family
    1.2e-06   29.1   0.2    1.4e-05   25.7   0.1    2.6  2  GAF              GAF domain
    3.8e-06   27.1   0.0      0.028   14.7   0.0    2.8  2  PAS_4            PAS fold
    0.00049   20.1   0.0     0.0013   18.7   0.0    1.8  1  AAA_5            AAA domain (dynein-related subfamily)
      0.006   16.7   0.0      0.014   15.5   0.0    1.6  1  AAA_2            AAA domain (Cdc48 subfamily)
  ------ inclusion threshold ------
      0.015   14.9   0.0      0.037   13.6   0.0    1.7  1  HTH_50           Helix-turn-helix domain
       0.02   14.4   0.0      0.046   13.2   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
      0.027   14.9   0.6        0.1   13.0   0.0    2.1  2  AAA_16           AAA ATPase domain
      0.042   14.3   0.0       0.11   12.9   0.0    1.8  1  AAA              ATPase family associated with various cellul
      0.063   13.3   0.1       0.16   12.0   0.1    1.7  1  PAS_8            PAS domain
      0.087   13.1   0.0       0.77   10.0   0.0    2.4  2  PAS_9            PAS domain
      0.098   12.8   0.1       0.25   11.5   0.1    1.8  1  PAS_7            PAS fold
       0.15   12.3   0.0       0.45   10.7   0.0    1.8  1  HTH_17           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       5.8   6.5e+03      85     116 ..     205     237 ..     202     242 .. 0.70
   2 !  123.2   0.0   7.5e-39   8.4e-36       4     167 ..     330     490 ..     327     491 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.8
                      BEHHHHHTTTSEEEEETGGGS-.HHHHHHHHHH CS
  Sigma54_activat  85 kkGlfekadgGtlfLDeigelp.lelQekLlrv 116
                        Gl+e+ d+G++  +e g l+ l++Q+  l  
       CTQ30075.1 205 MYGLLESMDDGVMAWNEQGVLQfLNVQAARLLH 237
                      569999999999999888877634666655554 PP

  == domain 2  score: 123.2 bits;  conditional E-value: 7.5e-39
                      -SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSEE CS
  Sigma54_activat   4 esealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgGtl 97 
                      +++++++l++  +++a+   +vl+ Ge G+GKell++aih++s+r+ +p++avnc  +++++l +++ G    a t+ e+ +  ++e a+gGtl
       CTQ30075.1 330 DDPETRRLIHFGRQAARGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFMGS---APTDDENGRLSRLELANGGTL 420
                      5677889999999*******************************************************97...679****************** PP

                      EEETGGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTSEEE CS
  Sigma54_activat  98 fLDeigelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeaveegkfredLyyrlnviei 167
                      fL+ i+ l +elQ+ Ll+v+++g ++r+ +++ i+vdv++ia+t+ dl++ ve+++f ++Lyy l+ +ei
       CTQ30075.1 421 FLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHSFEI 490
                      *****************************************************************99987 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   4.4e-21     5e-18      16     138 .]     343     495 ..     336     495 .. 0.92

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 4.4e-21
                      HHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H....................HHHHHHTTTSEEEEEE-TT--HHHHHHH CS
  Sigma54_activ_2  16 qaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp....................ldlleqakggtLylkdiadlskaeqkeL 89 
                      qaa+  +pv+l Ge+G gkel ++++h++s++   + +  ++                        l+ le a+ggtL+l+ i+ l +++q+ L
       CTQ30075.1 343 QAARGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYAdsvlgqdfmgsaptddengrLSRLELANGGTLFLEKIEYLAPELQSAL 436
                      799999**************************9999888888864445678888888889999988889999********************** PP

                      HHHHHH..........HTTTT-EEEEEEEE-TTT..----HHHHHHHHSSSEEEEE--- CS
  Sigma54_activ_2  90 lellak..........aeksslrlVstsskdleqlleagafdekLlkeLselrlhvPpL 138
                      l+++++            + ++++++t+  dl++l+e+++f ++L+++L ++++ +PpL
       CTQ30075.1 437 LQVIKQgvltrldarrLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHSFEIVIPPL 495
                      *************9984499**************************************8 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.8   6.4e+03      11      24 ..      72      85 ..      67      86 .. 0.84
   2 !   53.4   0.0     2e-17   2.2e-14       2     113 .]     204     306 ..     203     306 .. 0.97
   3 ?   -3.4   0.0       8.4   9.4e+03      38      60 ..     388     410 ..     383     415 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.8
                SSEEEEEETTSBEE CS
         PAS 11 pdpifvvDedgril 24
                p++ f++De+ +il
  CTQ30075.1 72 PCALFILDESACIL 85
                8999******9997 PP

  == domain 2  score: 53.4 bits;  conditional E-value: 2e-17
                 HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEECTTSSEEEEEEEEEEEEETT CS
         PAS   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfklrdgrpihlevraspvrdag 100
                 ++  +les++d++++++e+g+  + N  a++ll+l+++   gk++ dl+       l++ll++++++++  +++e++f+  ++ ++ ++++ +p+++a+
  CTQ30075.1 204 QMYGLLESMDDGVMAWNEQGVLQFLNVQAARLLHLDAQASQGKNIADLVT------LPALLRRAIKHARGLNHVEVTFES-QHQFVDAVITLKPIVEAQ 295
                 57789********************************************8......************************.****************** PP

                 EEEEEEEEEEEES CS
         PAS 101 geilgflgvlrdi 113
                 g+   f++ l+++
  CTQ30075.1 296 GN--SFILLLHPV 306
                 **..9**999986 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 8.4
                 HHHCTTSBGGGGBSTTHHHHHHH CS
         PAS  38 reevlgkslldliheeddaelae 60 
                 ++ vlg+ ++++ +++d+  + +
  CTQ30075.1 388 ADSVLGQDFMGSAPTDDENGRLS 410
                 56799999999999998654444 PP

>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       7.7   8.7e+03      33      39 ..     479     485 ..     479     486 .. 0.89
   2 !   48.7   0.1   4.3e-16   4.8e-13       3      42 .]     589     628 ..     587     628 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.7
                 HHHHHHH CS
       HTH_8  33 rtLyrKL 39 
                 r+Ly+ L
  CTQ30075.1 479 RQLYYAL 485
                 89***98 PP

  == domain 2  score: 48.7 bits;  conditional E-value: 4.3e-16
                 HHHHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHT CS
       HTH_8   3 eevEkelIeaALertgGnkskAArlLGisRrtLyrKLkkY 42 
                  ++Eke+I++A + t G+++++++lL+i+R+tL+rK+k+Y
  CTQ30075.1 589 SAIEKEAIIHAARVTSGRVQEMSQLLNIGRTTLWRKMKQY 628
                 579************************************9 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1   1.2e-08   1.4e-05       3     132 ..      54     188 ..      52     189 .. 0.75
   2 ?   -0.2   0.0       1.3   1.5e+03       9      26 ..     606     623 ..     600     638 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.2e-08
                 HHHHHHHHHHHHHHHTESEEEEEE.......EEETTEEECEEEEECC....EEEET...TSHHHH.....HHHHHSSSEEESTGGTSTTHHTTHHHHHH CS
         GAF   3 eelldtvveelrellgadrvalyl.......pdydGlhydipqasrw....lfmkn...grgicg.....qvlatgqplvipdstpdprfaqynrrdll 82 
                  ++ + ++e++ e+++ + +al++        +++G     pq ++      f+      ++i+g      ++ +gqp++ +    d +f q       
  CTQ30075.1  54 LTIGQAALEDAWEFMDGRPCALFIldesaciLSRCG----EPQTLAQlaalGFRDGsycAESIIGtcalsLAAMQGQPINTA---GDRHFKQ------- 138
                 57889999*********99***99565555533444....44444443333444444465667775555555557*******...9******....... PP

                 HHTTESEEEEEEEEE.TTEEEEEEEEEESSSCSHHHHHHHHHHHHHHHHHH CS
         GAF  83 enmgirsslvvPlvn.dgelwGllvlhnpsppftreelellqvladqvava 132
                  + ++ s+++ P+++ +g+l+G ++l    ++ ++++l l  ++a+ v+++
  CTQ30075.1 139 -ALQPWSFCSTPVFDnHGRLFGSISLCCLVEHQSSADLSLTLAIAREVGNS 188
                 .899**********66************55545999999999999999876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.3
                 HHHHHHHHHTESEEEEEE CS
         GAF   9 vveelrellgadrvalyl 26 
                  v+e+++ll+  r +l++
  CTQ30075.1 606 RVQEMSQLLNIGRTTLWR 623
                 699**************8 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0012       1.3      54      97 ..     116     159 ..     113     165 .. 0.88
   2 !   14.7   0.0   2.5e-05     0.028       1      54 [.     209     260 ..     209     283 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0012
       PAS_4  54 ralrrvlegeepiefleelllpgeerhyelrllPlrdesGevig 97 
                 +al  ++ +++pi ++  +++ ++ +++++  +P++d +G+  g
  CTQ30075.1 116 CALSLAAMQGQPINTAGDRHFKQALQPWSFCSTPVFDNHGRLFG 159
                 5677788999******************************9766 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2.5e-05
       PAS_4   1 ldslpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarler 54 
                 l+s+ d++ +++++g+ +++N +aa+l+++++++  Gk  a+l++ +  a l+r
  CTQ30075.1 209 LESMDDGVMAWNEQGVLQFLNVQAARLLHLDAQASQGKNIADLVTLP--ALLRR 260
                 7999**************************************88854..33333 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.2e-06    0.0013       1     120 [.     350     464 ..     350     483 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.2e-06
                 EEEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........-----.---G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvr.aaregeilvlDEveraesevlnsLlslleerrllle 97 
                 +vlL G+ G+gK  l++ +     ++   y++ + ++ ++ ++g+  + +  t  +++ l r +  +g +l+l+ +e + +e +++Ll+++ +  l   
  CTQ30075.1 350 PVLLCGEEGVGKELLSQAIHNESeRAGGPYIAVNCQLYADSVLGQDFMGSAPTDDENGRLSRlELANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRL 448
                 59*****************99998777888888888888888888888766666666666642234********************************* PP

                 -SSSEEE---......-EEEEEE CS
       AAA_5  98 eggelvkaknddllerfrviata 120
                 + ++l+ ++       + viat+
  CTQ30075.1 449 DARRLIPVD-------VKVIATT 464
                 ******997.......5566654 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.3e-05     0.014       6     142 ..     351     487 ..     349     523 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-05
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLL 100
                 +ll+g++gvGk++l++a+ +  + +   + i ++++ ++     ++ + +  + ++  +    + ++gG ++l+ i+  +p           + q +LL
  CTQ30075.1 351 VLLCGEEGVGKELLSQAIHNESE-RAGGPYIAVNCQLYADsvlgQDFMGSAPTDDENGRLSRLELANGGTLFLEKIEYLAP-----------ELQSALL 437
                 68999******************.9999******99999966655555555566666666677788899************...........******* PP

                 HHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-S........T CS
       AAA_2 101 qileggtltdkqgrkvdtknilfImtgafgsskisdesrsk........e 142
                 q++ +g+lt  + r+    ++ +I+t+ ++ ++  +++r +        +
  CTQ30075.1 438 QVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSrqlyyalhS 487
                 *********99998888888999999999999998877765555555550 PP

>> HTH_50  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.3e-05     0.037       9      49 ..     589     630 ..     587     631 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.3e-05
      HTH_50   9 eefErelikkayekYpStR..klAkrLGvShtaianklrkYgI 49 
                 +++E+e+i++a +  +S R   + + L +  t+  +k+++Y+I
  CTQ30075.1 589 SAIEKEAIIHAAR-VTSGRvqEMSQLLNIGRTTLWRKMKQYDI 630
                 6799999999965.588884469*******************9 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.1e-05     0.046       9      82 ..     324     397 ..     319     403 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.1e-05
       AAA_7   9 fseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdii 82 
                 f+++     +t r+ ++ ++  + + pvll+G++G+GK ++ + + ++ ++    ++ +n++ + ++   qd++
  CTQ30075.1 324 FEQMSADDPETRRLIHFGRQAARGGFPVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLYADSVLGQDFM 397
                 6666677779999999999*************************999999888888888888887777766666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.7   1.9e+03      73     142 ..     178     276 ..     160     293 .. 0.61
   2 ?   13.0   0.0   9.1e-05       0.1       8     125 ..     333     442 ..     331     488 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.7
      AAA_16  73 aqalareellrqlldeaesaeleawrekleeala.............................avpelagaea.....srllellkrllallsrderpl 137
                 + a+ar e+ + ll+++  ae +++  +  + l+                             a    a++++       l +ll+r+++ ++   + +
  CTQ30075.1 178 TLAIAR-EVGNSLLTDSLLAESNRHLNQMYGLLEsmddgvmawneqgvlqflnvqaarllhldA---QASQGKniadlVTLPALLRRAIKHARGLNH-V 271
                 445534.666777777666666666666666666666666666666666666666665553321...222222344666777777777766666666.6 PP

      AAA_16 138 vlvlD 142
                  ++++
  CTQ30075.1 272 EVTFE 276
                 66655 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 9.1e-05
      AAA_16   8 eleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala 106
                 e+++L +  +++++g+   vll Ge GvGK  l ++++++ e++gg +++ +c+ +          ++l   +++    +++e+  l++   +  ++l 
  CTQ30075.1 333 ETRRLIHFGRQAARGGF-PVLLCGEEGVGKELLSQAIHNESERAGGPYIAVNCQLY--------ADSVL-GQDFMGSAPTDDENGRLSRLELANGGTLF 421
                 55666665566666664.799************************999******99........33333.33555555555444333333333333222 PP

      AAA_16 107 ..avpelagaeasrllellkr 125
                    +  la+++ s+ll+++k+
  CTQ30075.1 422 leKIEYLAPELQSALLQVIKQ 442
                 444446666666666666655 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.9e-05      0.11       1     111 [.     351     466 ..     351     485 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.9e-05
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS.....STTHHH.HHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk.....yvgese.kkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLl 90 
                 vll+G  G+GK ll +a+ +e+   g +++ +++    ++     ++g ++ ++ ++ +++++  +    lf++ i+ la++    +s   + + +  l
  CTQ30075.1 351 VLLCGEEGVGKELLSQAIHNESeraGGPYIAVNCQLYADSvlgqdFMGSAPtDDENGRLSRLELAN-GGTLFLEKIEYLAPEL---QSALLQVIKQGVL 445
                 79*******************633367788888877775545555555554144556666665444.699*********9999...7777888888888 PP

                 HHHHHTTTSSSTEEEEEEESS CS
         AAA  91 teldgvkkkeskvivigatnr 111
                 t ld  +    +v vi++t+ 
  CTQ30075.1 446 TRLDARRLIPVDVKVIATTTV 466
                 888888888888999998875 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00015      0.16       5      44 ..     207     244 ..     203     268 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
       PAS_8   5 alfesspdgiavvdlgdrivdvNqaalellGysadlkgel 44 
                 +l+es++dg++ +++++ + + N +a++ll+++    ++ 
  CTQ30075.1 207 GLLESMDDGVMAWNEQGVLQFLNVQAARLLHLD--AQASQ 244
                 69************7675888**********66..33322 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.4   1.6e+03      80      97 ..     145     162 ..     141     166 .. 0.80
   2 ?   10.0   0.0   0.00069      0.77       2      86 ..     214     292 ..     213     304 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.4
       PAS_9  80 ltaspvkdddgelvgiiv 97 
                 ++ +pv+d++g+l+g i+
  CTQ30075.1 145 FCSTPVFDNHGRLFGSIS 162
                 5679*********99554 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00069
       PAS_9   2 dgilidnpdgril.yaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrkkerevevvlirkngetfwvl..ltaspvk 86 
                 dg++  n++g +l + N +a+rll  ++++  gk+i dl+        +l a+l++  k++r  + v+++ + +  +v+  +t+ p+ 
  CTQ30075.1 214 DGVMAWNEQG-VLqFLNVQAARLLHLDAQASQGKNIADLV--------TLPALLRRAIKHARGLNHVEVTFESQHQFVDavITLKPIV 292
                 677776799*.999**************************........4444444444444444444444444333333234445555 PP

>> PAS_7  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00022      0.25       1      48 [.     209     255 ..     209     289 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00022
       PAS_7   1 lenmsqGisvfDadlrLvawNrrylelldlpeelvqvgvpleellryn 48 
                 le+m++G++  ++++ L + N +  +ll+l ++   +g+++++l+   
  CTQ30075.1 209 LESMDDGVMAWNEQGVLQFLNVQAARLLHLDAQAS-QGKNIADLVTLP 255
                 89****************************99988.899999999876 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0004      0.45       4      31 ..     607     634 ..     606     639 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0004
      HTH_17   4 veEaAelLgvsrstvyrlirrgelpaak 31 
                 v+E+++lL+++r+t+ r  ++ ++ a  
  CTQ30075.1 607 VQEMSQLLNIGRTTLWRKMKQYDIDASQ 634
                 89*****************999998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4449.81
//
Query:       CTQ30076.1  [L=365]
Description: glycerol dehydrogenase, NAD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.5e-68  228.8   4.1    9.7e-68  228.6   4.1    1.0  1  Fe-ADH         Iron-containing alcohol dehydrogenase
    9.8e-35  120.4   0.4    1.4e-34  120.0   0.4    1.1  1  Fe-ADH_2       Iron-containing alcohol dehydrogenase
     0.0012   18.2   0.1      0.007   15.7   0.0    2.0  2  PFK            Phosphofructokinase
  ------ inclusion threshold ------
      0.032   14.0   0.1       0.74    9.5   0.0    2.9  4  FAD_binding_4  FAD binding domain
       0.07   12.9   0.0       0.12   12.2   0.0    1.3  1  RibD_C         RibD C-terminal domain


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.6   4.1   2.7e-71   9.7e-68       1     364 []       8     348 ..       8     348 .. 0.94

  Alignments for each domain:
  == domain 1  score: 228.6 bits;  conditional E-value: 2.7e-71
                 -SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHH CS
      Fe-ADH   1 PtrivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKa 99 
                 P ++++g++a+   g+++k+l  ++ ++++d +++ k+ + +kv++ l++++i+++  ++++++++ +e++++ a+++++g+ +v+++GGG+++DtAKa
  CTQ30076.1   8 PAKYLQGPDAAVLFGQYAKNLA-ESFFVIADDFVM-KL-AGEKVVNGLQSHDIRCH-AERFNGECSHAEINRLMAILQKQGCRGVVGIGGGKTLDTAKA 102
                 899******************8.9*********88.77.99*************99.79**************************************** PP

                 HHHHTT..................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHHHHHH CS
      Fe-ADH 100 ialllanpevedylgegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalEayvs 198
                 i ++ +                  lp+++iPT+a+t++++++l+vi+ +e ge  ++  ++ +Pd++++D+++++++P r+++++++Dal++++Ea ++
  CTQ30076.1 103 IGYYQK------------------LPVVVIPTIASTDAPTSALSVIY-TEAGEFEEYLIYPKNPDMVVMDTAIIAKAPVRLLVSGMGDALSTWFEAKAC 182
                 ******..................***********************.888866666666************************************888 PP

                 .H.T---TTSS.B--HHHHHHHHHHHHHHHHHHHH..........HHHHHHHHHHHH.HHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH. CS
      Fe-ADH 199 .k.kanplsda.laleairliaknleravadgedl..........eareqmllastl.aglafsnaglgavHalahalgalfgiphglanaillpavlr 283
                    +a+ +  +  +++a+ l++ ++++++a+ge++          ea e++++a+t+ +g++f+++gl+a+Ha++++++  ++  h+l +++++++++ 
  CTQ30076.1 183 yDaRATSMAGGqSTEAALSLARLCYDTLLAEGEKArlaaqagvvtEALERIIEANTYlSGIGFESSGLAAAHAIHNGFTI-LEECHHLYHGEKVAFGT- 279
                 5335555444449999****************977889******************99*********************9.8888*************. PP

                 .........HHHHHHT.......T--HHHHHHHHHHHHHTT---SHHHHT-TT-...HHHHHHHHHT-T.SGGGGSSS---HHHH CS
      Fe-ADH 284 fnaeaaperlaqlaralggesdeeaaeeliealrellkelglptsLselgvdee...dldklaeaalkd.rslannpreltaedv 364
                          laql+         +++ ++ie +  +++++glp++L+++gv+e    ++ ++a+a++++ ++++n+p+++t+e+v
  CTQ30076.1 280 ---------LAQLVLQ-------NSPMDEIETVLGFCQRVGLPVTLAQMGVKEGideKIAAVAKATCAEgETIHNMPFAVTPESV 348
                 .........9999999.......9**************************999556899**********************9975 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.0   0.4   3.8e-38   1.4e-34      17     250 .]      27     276 ..      15     276 .. 0.83

  Alignments for each domain:
  == domain 1  score: 120.0 bits;  conditional E-value: 3.8e-38
    Fe-ADH_2  17 lelkkvllvadentkkaagekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsaklnvpyvsvpTaaSvDGfa 115
                 + ++ ++++ad  + k+agekv + l++++i+++  e++++e ++ e+++l++ l+++++  vv++GgG+ +D+ak + + +++p+v++pT aS D  +
  CTQ30076.1  27 NLAESFFVIADDFVMKLAGEKVVNGLQSHDIRCH-AERFNGECSHAEINRLMAILQKQGCRGVVGIGGGKTLDTAKAIGYYQKLPVVVIPTIASTDAPT 124
                 4567899**************************9.566************************************************************* PP

    Fe-ADH_2 116 spgaslvvd.gkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkyt...aladwklanevseplaklsaamvqeaaeklvedkk.......e 202
                 s  + ++++ g+ + + +  + P  v++D+ ++a+AP rll sG+GD+l+ +    a +d ++++++  + ++++    + + ++l+++++        
  CTQ30076.1 125 SALSVIYTEaGEFEEYlIYPKNPDMVVMDTAIIAKAPVRLLVSGMGDALSTWFeakACYDARATSMAGGQSTEAALSLARLCYDTLLAEGEkarlaaqA 223
                 ********9977777777889******************************985556668887775544444444444444444444432211122211 PP

    Fe-ADH_2 203 ...tealeelleal.alsgigisrpaSGsEHliSHaldmlal.kqalHGeqVG 250
                    teale+++ea   lsgig+++++  + H i   +  l++ ++  HGe+V+
  CTQ30076.1 224 gvvTEALERIIEANtYLSGIGFESSGLAAAHAIHNGFTILEEcHHLYHGEKVA 276
                 3349999999999559*****************98888776656899****96 PP

>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     2e-06     0.007      75     138 ..      68     126 ..      40     131 .. 0.82
   2 ?   -0.2   0.0      0.13   4.8e+02     236     268 ..     277     309 ..     218     316 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2e-06
                 GSHHHHHHHHHHHHHHT--EEEEEESHHHHHHHHHHHHT..T....--EEEEEEETT---TT-S CS
         PFK  75 keregrkkaaenlkklgidaLvviGGdgslkganklseerkglleelkivgiPkTidNDipgtd 138
                  ++ +++++++ l+k+g +++v iGG ++l++a+++  + ++    l++v+iP   + D p + 
  CTQ30076.1  68 CSHAEINRLMAILQKQGCRGVVGIGGGKTLDTAKAIGYY-QK----LPVVVIPTIASTDAPTSA 126
                 345569999***************************965.57....9******98888877665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHSS-EEEEE-GGGGG-S---HH CS
         PFK 236 aeelakeieektgievrvtvlGhlqrGgspsaf 268
                    la+++ +++ ++   tvlG +qr g p  +
  CTQ30076.1 277 FGTLAQLVLQNSPMDEIETVLGFCQRVGLPVTL 309
                 455666665556788889999999999999876 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.39   1.4e+03       9      37 ..      69      98 ..      69     116 .. 0.77
   2 ?   -2.3   0.0      0.97   3.5e+03       3      35 ..     140     172 ..     139     179 .. 0.83
   3 ?    9.5   0.0   0.00021      0.74      34     107 ..     188     258 ..     184     271 .. 0.70
   4 ?   -0.6   0.0      0.27   9.7e+02       4      29 ..     284     309 ..     281     314 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.39
                   SHHHHHHHHHHHHHCTSC.EEEESSSTTEE CS
  FAD_binding_4  9 seeevaaalrlaneaglp.vlvrGgGssll 37
                   s++e+ +++++ +++g + v+ +GgG  l 
     CTQ30076.1 69 SHAEINRLMAILQKQGCRgVVGIGGGKTLD 98
                   678999999999999988788888888776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.97
                    EEEEESSHHHHHHHHHHHHHCTSCEEEESSSTT CS
  FAD_binding_4   3 avvrpeseeevaaalrlaneaglpvlvrGgGss 35 
                    ++++p++++ v+   ++ ++a +++lv G G  
     CTQ30076.1 140 YLIYPKNPDMVVMDTAIIAKAPVRLLVSGMGDA 172
                    678999999999999999999999999998865 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00021
                    TTEE.STTCSCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCGSBHHHTTTTT CS
  FAD_binding_4  34 ssll.gqavatggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgipgtvGGaiatn 107
                    +s++ gq++ + ++ l    ++++   + e+ ++ ++aGv+ ++l++ ++a+ +l g+ ++s  +g ++++ + n
     CTQ30076.1 188 TSMAgGQST-EAALSLARLCYDTL-LAEGEKARLAAQAGVVTEALERIIEANTYLSGIGFES--SGLAAAHAIHN 258
                    667745554.55555544335554.455579*********************9999966655..45555555555 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.27
                    EEEESSHHHHHHHHHHHHHCTSCEEE CS
  FAD_binding_4   4 vvrpeseeevaaalrlaneaglpvlv 29 
                    v++ +  +e++++l ++++ glpv+ 
     CTQ30076.1 284 VLQNSPMDEIETVLGFCQRVGLPVTL 309
                    555566799**************986 PP

>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.4e-05      0.12     114     167 ..      61     117 ..      34     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.4e-05
                 HHHCC.E..SE-HHHHHHHHHHTT--EEEEEETHHHHHHHHHTTT-SEEEEEEESCE CS
      RibD_C 114 veklk.v..rvdlkelleeLkergirsllveGGatLagsllraglvDelrlyiaPkl 167
                  e+++    + ++ +l+++L+++g+r ++  GG++++ +  + g +++l +++ P++
  CTQ30076.1  61 AERFNgEcsHAEINRLMAILQKQGCRGVVGIGGGKTLDTAKAIGYYQKLPVVVIPTI 117
                 344444146899*******************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 3053.82
//
Query:       CTQ30077.1  [L=58]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 458.87
//
Query:       CTQ30078.1  [L=356]
Description: dihydroxyacetone kinase, N-terminal domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-126  421.8   0.0   1.5e-126  421.5   0.0    1.0  1  Dak1      Dak1 domain


Domain annotation for each model (and alignments):
>> Dak1  Dak1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.5   0.0  8.2e-131  1.5e-126       1     311 []      17     351 ..      17     351 .. 0.96

  Alignments for each domain:
  == domain 1  score: 421.5 bits;  conditional E-value: 8.2e-131
                 HHHHHH-TTEEEETTTTEEEETT-S-TTS-EEEEEEEESSTTTTGGGBSBTSBSEEEEEEETS---HHHHHHHHHHH--SS-EEEEEESSHHHHHHHHH CS
        Dak1   1 eGlvaanpelklleeekvvvrkkekkkgkValisgGGSGHePahagfVGkgmldaavaGevFaSPsakqilaaikavdsgkGvllivkNYtGDvlnfgl 99 
                 +Gl++a+p+l+l++++ +v+r++++ +gkVal+sgGGSGHeP+h+g++G+gml++a++Ge+F+SP+++++++++ ++d+g+Gvlli+kNYtGD+lnf++
  CTQ30078.1  17 QGLAKAHPQLTLHQDPLYVTRTDAPVAGKVALLSGGGSGHEPMHCGYIGQGMLSGACPGEIFTSPTPDKMFECAMQIDGGEGVLLIIKNYTGDILNFET 115
                 69************************************************************************************************* PP

                 HHHHHHHTT--EEEEEE--B-SSSSSTTCSSSB--THHHHHHHHHHHHHHHT--HHHHHHHHHHHHTTEEEEEEEEE--B-TTTSSBSS---TTEEEET CS
        Dak1 100 AaekakaegikvetvvvdDDvavedseekagrRGvagtvlveKiaGaaAeegasLeevaelaekvaenlrsigvalsactvpgagkpsfelaedeielG 198
                 A+e+++++gikv+tvvvdDDvav+ds ++agrRGva tvl+eK++GaaAe+g+sLe++ael++++++  +sig+al actvp+ag+psf+l++de+e+G
  CTQ30078.1 116 ATELLHESGIKVTTVVVDDDVAVKDSLYTAGRRGVANTVLIEKLVGAAAERGDSLEACAELGRRLNNLGHSIGIALGACTVPAAGQPSFTLKDDEMEFG 214
                 *************************************************************************************************** PP

                 E-TTS---SEEEE---HHHHHHHHHHHHHH.........T.....................T-EEEEEEEE-BSS-HHHHHHHHHHHHHHHHHTT-EEE CS
        Dak1 199 lGiHgEpGvervklksadelveelleklledke....lkk.....................gdevvllvNglGgtsllelyivarevaelleekgikvv 272
                 +GiHgEpG++r++++s d++v+e++++lle+      l +                     gd+v++lvN+lG+t+l+ely v++++a+ +e++gi ++
  CTQ30078.1 215 VGIHGEPGIDRRRFSSLDQTVDEMFDTLLENGAysrtL-RqwdtvkgawqevqqsktalqnGDRVIALVNNLGATPLSELYGVYNRLAQRCEASGIIIE 312
                 *****************************944444441.0456666777777778888888************************************** PP

                 EEEEESSS--TTBEEEEEEEEEE-HHHHHHHHS-EESSS CS
        Dak1 273 rvlvGeyvTsldmaGfsitllklddellelldapvetpa 311
                 r+l+G+y+TsldmaGfsitllk+dde+l+l+dapv+tpa
  CTQ30078.1 313 RNLIGSYCTSLDMAGFSITLLKVDDETLTLWDAPVHTPA 351
                 ************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2811.78
//
Query:       CTQ30079.1  [L=210]
Description: dihydroxyacetone kinase, C-terminal domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-54  184.6   0.4    1.7e-54  184.3   0.4    1.0  1  Dak2      DAK2 domain


Domain annotation for each model (and alignments):
>> Dak2  DAK2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.3   0.4   9.5e-59   1.7e-54       1     173 [.      32     205 ..      32     206 .. 0.98

  Alignments for each domain:
  == domain 1  score: 184.3 bits;  conditional E-value: 9.5e-59
                 TTS-S-HHHHHHHHHHHHHHHHHC---SSHHHHHHHHHHHHHHH--STHHHHHHHHHHHHHHHC.....TT---HHHHHHHHHHHHHHHH---TTSSST CS
        Dak2   1 pvGDGDtGtnmargaeavlkaleeleeaslaevlkalakallsgagGtsGvlysqflralakalkekeeldaedlaaalkaaleaiqavgkarpgdkTm 99 
                 ++GD+D+G nm+rg+++v+++l + ++++++ +lk+ +++lls++gG+sG+l+++f+ ++a+  + +++l+ ++l  +++++++++ ++gka+pgdkTm
  CTQ30079.1  32 EIGDADHGLNMHRGFSKVVEKLPSIADKDIGFILKNTGMTLLSNVGGASGPLFGTFFIRAAQVTQAHQSLTLDELYLMIREGADGVVNRGKAEPGDKTM 130
                 59************************************************************************************************* PP

                 HHHHHHHHHHHHT............T---HHHHHHHHHHCCS---SSGGGGGGGGGTTS--HHHHHHHHHHHHHH CS
        Dak2 100 lDvlrpavealekakd.gedlkealekaakaaekgaeaTkellaklgrAsylgerslgvvDpGAvglalileala 173
                 +Dv+ p+v++l+++ + + ++++al++a++ ae++a aT  ++a++grAsylgers+g++DpGA++++ +++ la
  CTQ30079.1 131 CDVWLPVVDSLRQSSEqHLSIAAALDAACEVAERAAHATITMQARKGRASYLGERSIGHQDPGATSVLFMVQMLA 205
                 *************7777*****************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1731.74
//
Query:       CTQ30080.1  [L=473]
Description: fused dihydroxyacetone-specific PTS enzymes: HPr component; EI component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-25   87.9   0.6    1.2e-24   86.7   0.6    1.6  1  EIIA-man         PTS system fructose IIA component
    2.7e-20   72.7   2.6    7.1e-20   71.3   2.6    1.8  1  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
    1.8e-16   60.1   0.1    4.1e-16   59.0   0.1    1.7  1  PTS-HPr          PTS HPr component phosphorylation site
      5e-12   45.4   0.0    1.1e-11   44.2   0.0    1.6  1  PEP-utilizers    PEP-utilising enzyme, mobile domain


Domain annotation for each model (and alignments):
>> EIIA-man  PTS system fructose IIA component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.6   2.8e-28   1.2e-24       2     115 ..       4     120 ..       3     121 .. 0.96

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 2.8e-28
                 EEEEESB.CHHHHHHHHHHCCHSSS-SCEEEEEC-TT..S-CCCHHHHHHHHHCTS--TTEEEEEESSCCCHHHHHHHHCCTTSTTEEEEEC--CHHHH CS
    EIIA-man   2 ivivsHg.elAeglaelleelagedqekviavggtpd..esigtlaekikeaieevdsedevlvLvDlggatpfneaaleleekeelevitgvnlPlve 97 
                 +vivsH+ +l+eg+ el+++++ +d +k+++++g++d    igt+  k++eaie+v + d+vlv++D+g+a +++e+al+l++   +++++++ +Plve
  CTQ30080.1   4 LVIVSHSaRLGEGVGELARQMLINDGCKLAIAAGIDDpdSPIGTDPLKVMEAIESVADTDHVLVMMDIGSALLSAETALDLLDPAIAAKVRLCAAPLVE 102
                 8***********************9**********986689********************************************************** PP

                 HHHHHHCHHHCCHHHHHH CS
    EIIA-man  98 eavaarasaslgelvekv 115
                 +++aa++sa++g+ ++kv
  CTQ30080.1 103 GTLAATVSAASGAGIDKV 120
                 ***********9999887 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   2.6   1.6e-23   7.1e-20      20     116 .]     271     370 ..     249     370 .. 0.84

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 1.6e-23
                      -----G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH...T-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHTT- CS
  PEP-utilisers_N  20 eeeeveaedveaelerleeAlekvreelealaeka...lgeeeaaifeahlmlleDpelleeveerIregglnaeaAveevveefaaqfealdd 110
                      +  +++a+d+++e++rl++A++++ ++l al e a    +++ aaif+ h  ll+D++l +++++r+ +++++ae+A+++v+ e+ +q+++ldd
       CTQ30080.1 271 QPLRPAAADAAREQQRLRQAIDQTLADLIALTELAenkFNADIAAIFAGHHTLLDDDDLFDAANDRLLTEQCTAEWAWHQVLMELSQQYRQLDD 364
                      445678899*******************99877666554455699************************************************* PP

                      HHHHHH CS
  PEP-utilisers_N 111 eylreR 116
                      +yl++R
       CTQ30080.1 365 PYLQAR 370
                      ****99 PP

>> PTS-HPr  PTS HPr component phosphorylation site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.1   9.1e-20   4.1e-16       3      80 ..     159     236 ..     157     238 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 9.1e-20
                 EEEEEESTCCCSHHHHHHHHHHHTTSSSEEEEEE....EETTSHHHHHHCTCSTT-EEEEEEESTTHHHHHHHHHHHH CS
     PTS-HPr   3 kkvtiknekGlhaRpAamlvqaasefksevtlekkdkpvnaksilglmsLgvkkGeevtvsaeGedeeealealaell 80 
                  +v+i+n +Glh RpA++lv a + f+++  lek++k v+ +s+ ++  L+v++++++++ a+G+d+++al+a+++l 
  CTQ30080.1 159 VSVIINNHNGLHVRPASKLVAALAGFNADLLLEKNGKCVKPDSLNQIALLQVRRNDKLRLLARGPDADAALAAFQALA 236
                 579*******************************88*************************************99986 PP

>> PEP-utilizers  PEP-utilising enzyme, mobile domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   2.6e-15   1.1e-11       4      70 ..     397     465 ..     394     467 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 2.6e-15
                    S-EEEEES---HHHHTTS-..GEEEEEES--TTHHHHHHHHHHTT--EEE--SSHH.HH--TEEEEEET CS
  PEP-utilizers   4 egvILvaeetspsdiagld..kaaGivterGGmtSHaAivArelgiPaVvgvgeatielkegdlitvDg 70 
                    e++I++a+++ ps + +ld   ++G++   G+   H Ai+Ar+ gi ++++ gea+ +++ g++i++D 
     CTQ30080.1 397 EPTIIIADNIYPSTVLQLDasFVKGLCLRDGSEQAHGAIIARAAGIAWLSQQGEALNSVQPGETIVLDM 465
                    569*****************************************************999999******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3500.98
//
Query:       CTQ30081.1  [L=549]
Description: Dihydroxyacetone kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-97  324.3   0.9    8.5e-97  323.8   0.9    1.2  1  Dak1      Dak1 domain
    1.7e-39  135.5   5.9    3.4e-39  134.5   5.9    1.5  1  Dak2      DAK2 domain


Domain annotation for each model (and alignments):
>> Dak1  Dak1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.8   0.9  9.4e-101   8.5e-97      10     309 ..      32     324 ..      23     326 .. 0.93

  Alignments for each domain:
  == domain 1  score: 323.8 bits;  conditional E-value: 9.4e-101
                 EEEETTTTEEEETT-S-TTS-EEEEEEEESSTTTTGGGBSBTSBSEEEEEEETS---HHHHHHHHHHH--SS-EEEEEESSHHHHHHHHHHHHHHHHTT CS
        Dak1  10 lklleeekvvvrkkekkkgkValisgGGSGHePahagfVGkgmldaavaGevFaSPsakqilaaikavdsgkGvllivkNYtGDvlnfglAaekakaeg 108
                 l+ ++  +vvvr++  +k++Va+isgGG+GHePah+gf+Gkgml+aav+G+ FaSPs++++l+ai+av++++G+llivkNYtGD+lnfglAaeka++ g
  CTQ30081.1  32 LESDPAIRVVVRRDL-NKNNVAVISGGGAGHEPAHVGFIGKGMLTAAVCGDLFASPSVDAVLTAIQAVTGEAGCLLIVKNYTGDRLNFGLAAEKARRLG 129
                 556666788999644.69********************************************************************************* PP

                 --EEEEEE--B-SSSSSTTCSSSB--THHHHHHHHHHHHHHHT--HHHHHHHHHHHHTTEEEEEEEEE--B-TTTSSBSS---TTEEEETE-TTS---S CS
        Dak1 109 ikvetvvvdDDvavedseekagrRGvagtvlveKiaGaaAeegasLeevaelaekvaenlrsigvalsactvpgagkpsfelaedeielGlGiHgEpGv 207
                 ++ve+++v+DD+++    ++++ RG+agt+lv+K+aG +Ae+g +L++v + a+ +a++++sigval +c++p+++++  + ++++ elG+GiHgEpG 
  CTQ30081.1 130 YNVEMLIVGDDISL---PDNKQPRGIAGTILVHKVAGYFAERGFNLATVLREAQYAASHTASIGVALASCHLPQEADSAPRHQAGHAELGMGIHGEPGA 225
                 **************...567889**************************************************************************** PP

                 EEEE---HHHHHHHHHHHHHH.....TT-EEEEEEEE-BSS-HHHHHHHHHHHHHHHHHTT-EEEEEEEE..SSS--TTBEEEEEEEEEE-HHHHHHHH CS
        Dak1 208 ervklksadelveelleklledkelkkgdevvllvNglGgtsllelyivarevaelleekgikvvrvlvG..eyvTsldmaGfsitllklddellelld 304
                 +++++++++e+v+ ++ekl++   l +  ++++++N+lGg+s  e+ i++re+a++  ++ i+    l+G  ++vT+ldm+Gfs+t + l+++++++l 
  CTQ30081.1 226 STIATQNSAEIVNLMVEKLTA--ALPETGRLAVMLNNLGGVSVAEMAILTRELANTPLQARID---WLIGpaSLVTALDMKGFSLTTIVLEESIEKALL 319
                 ********************8..566679*************************999888665...45665589**********************998 PP

                 S-EES CS
        Dak1 305 apvet 309
                 + vet
  CTQ30081.1 320 SDVET 324
                 88877 PP

>> Dak2  DAK2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   5.9   3.8e-43   3.4e-39       1     173 [.     382     547 ..     382     548 .. 0.95

  Alignments for each domain:
  == domain 1  score: 134.5 bits;  conditional E-value: 3.8e-43
                 TTS-S-HHHHHHHHHHHHHHHHHC-..--SSHHHHHHHHHHHHHHH--STHHHHHHHHHHHHHHHC.....TT---HHHHHHHHHHHHHHHH---TTSS CS
        Dak2   1 pvGDGDtGtnmargaeavlkaleel..eeaslaevlkalakallsgagGtsGvlysqflralakalkekeeldaedlaaalkaaleaiqavgkarpgdk 97 
                 +vGDGDtG+++a+ga++++++le++  + ++l ++++ +++ l   +gG+sGvl+s+f++a++++l + ++     +a+al+a+le+++ +g+a+ gd+
  CTQ30081.1 382 KVGDGDTGSTFAAGAREIAERLERQqlPLNDLPTLFALIGERLTVVMGGSSGVLMSIFFTAAGQKLGQGAS-----VAEALNAGLEQMKFYGGADEGDR 475
                 59***********************99***************************************87766.....9********************** PP

                 STHHHHHHHHHHHHT...........T---HHHHHHHHHHCC.S---SSGGGGGGGGGT.TS--HHHHHHHHHHHHHH CS
        Dak2  98 TmlDvlrpavealekakdgedlkealekaakaaekgaeaTke.llaklgrAsylgersl.gvvDpGAvglalileala 173
                 Tm+D+l+pa  al ++       e l++a +aa++ga++T +  +a  grAsyl++ sl g +DpGA+++a++++ala
  CTQ30081.1 476 TMIDALQPALAALLAEP------ENLQAAFAAAQAGADRTCQsSKAGAGRASYLNSDSLlGNMDPGAHAVAMVFKALA 547
                 ***************54......46***************761579******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 4164.43
//
Query:       CTQ30082.1  [L=258]
Description: putative siderophore interacting protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-30  106.1   0.0      2e-30  105.5   0.0    1.3  1  FAD_binding_9  Siderophore-interacting FAD-binding domain
    1.6e-20   73.8   0.2    2.3e-20   73.3   0.2    1.2  1  SIP            Siderophore-interacting protein


Domain annotation for each model (and alignments):
>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.0   2.2e-34     2e-30       2     120 ..      25     135 ..      24     136 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 2.2e-34
  FAD_binding_9   2 vvrverlspslrrvtltgeelagfksdgtDqhikLllpepgqtepelppelteeglqeweelpederpvmRtYtvraldaeaeeldidfvlHgdeg 97 
                    v rver  ++++r++l+ge+l+gf+s+g D+h kL++pepg++ +  pp++teeg ++w    e  rp +R+Yt+  +dae++el+ df++H+  g
     CTQ30082.1  25 VLRVERAGAAFQRIVLGGEALEGFASHGFDDHTKLFFPEPGAAFT--PPQVTEEG-IDW---GEGVRPATRDYTP-LYDAERHELAYDFYIHDG-G 112
                    899****************************************98..********.559...99***********.9*****************.* PP

  FAD_binding_9  98 paarwAaqAqpGdelaivgPgga 120
                    +a+rwA +A++Gd+l i gP+g+
     CTQ30082.1 113 IASRWALEAKVGDKLVIGGPRGS 135
                    *********************97 PP

>> SIP  Siderophore-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.2   2.5e-24   2.3e-20       2     118 ..     143     257 ..     142     258 .] 0.94

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 2.5e-24
         SIP   2 dwvllagDeTAlPAiaaiL...eelpadaqvravievpdaadelelsapaaveltwlvregaaaagelLaealrelelpagelyvwvagEaavvkalRr 97 
                 +w+l+++De+++PA++++L   ++lpa++qv+a++ ++da+ + +l+  ++++++w+v ++     + +ae+l+++++pa+++++w++gE avvk+l +
  CTQ30082.1 143 AWQLYVCDESGMPALRRRLlglRQLPARPQVTAIVTIADASYKDYLADLDGFNIEWVVGHNP----AFVAERLAQVKVPAEDYFIWLTGEGAVVKSLLA 237
                 69***************97222666*************************************....9******************************** PP

         SIP  98 hlvkergldrkqvaamgYWrr 118
                  + +e  +d++ v+ ++YW+ 
  CTQ30082.1 238 RFEDE-SIDQQLVRSQAYWHS 257
                 **866.9************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2095.87
//
Query:       CTQ30083.1  [L=184]
Description: putative transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-14   54.2   0.1    2.6e-14   52.9   0.0    1.7  2  PadR      Transcriptional regulator PadR-like family
  ------ inclusion threshold ------
      0.044   14.4   0.0       0.11   13.2   0.0    1.6  2  RTP       Replication terminator protein


Domain annotation for each model (and alignments):
>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   2.9e-18   2.6e-14       1      62 [.      45     101 ..      45     114 .. 0.87
   2 ?   -2.0   0.0      0.41   3.7e+03       7      25 ..     114     132 ..     110     136 .. 0.72

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 2.9e-18
                 HHHHHCCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEE CS
        PadR   1 iLalleeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglveseweesgegpprky 62 
                 iL +l+++ s+Gye+ike+e+l++g + +s+G +Yp+L+ L+++gl++ e ++      rk 
  CTQ30083.1  45 ILDILSRSASHGYELIKEIETLTQGNYSPSPGVIYPTLDLLQDQGLISVEDDN-----GRKK 101
                 899*********************************************99775.....3444 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.41
                 CS-EEHHHHHHHHHCCSTT CS
        PadR   7 eqpsyGyeiikeleelseg 25 
                 e++++   i ++l++++ g
  CTQ30083.1 114 ENQEHLAHIQERLQARMVG 132
                 5556888888899888776 PP

>> RTP  Replication terminator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.2e-05      0.11      10      64 ..      41      94 ..      33     133 .. 0.84
   2 ?   -1.5   0.0      0.44   3.9e+03      70      84 ..     145     159 ..     120     179 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
                HHHHHHHHHHTT-EBCTCHHHHHHHHHTTTT----HHHHHHHHHHHHHTTSEEEE CS
         RTP 10 lklylitlvekkklyglklldelkkeFkelgykPnhseiyralhelvedgilkrr 64
                l+l ++ ++ ++  +g++l+ e+  +  +  y+P++  iy +l+ l ++g+++ +
  CTQ30083.1 41 LRLIILDILSRSASHGYELIKEIE-TLTQGNYSPSPGVIYPTLDLLQDQGLISVE 94
                68999*****************96.678889*******************98754 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.44
                 SSSSSEEEEEEESS. CS
         RTP  70 kaklqevviYsltde 84 
                  ++++ v+  +++++
  CTQ30083.1 145 LENFKAVLDLKVNQQ 159
                 334444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1583.93
//
Query:       CTQ30084.1  [L=88]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 688.71
//
Query:       CTQ30085.1  [L=459]
Description: putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.5e-104  348.3   0.0   6.5e-104  347.8   0.0    1.2  1  Aminotran_3   Aminotransferase class-III
  ------ inclusion threshold ------
       0.13   13.1   0.1       0.34   11.7   0.1    1.7  1  GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fol


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.8   0.0  7.3e-108  6.5e-104      19     406 .]      74     449 ..      63     449 .. 0.92

  Alignments for each domain:
  == domain 1  score: 347.8 bits;  conditional E-value: 7.3e-108
                  TEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHHHHHHHHTSH CS
  Aminotran_3  19 vyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKlarkyarekka 116
                  + l+d +g++++D ++++   n+Gh++P vv av++q+ak  + s ++l     + la+ l++l+p++l   f++nsG+e+ve+A+Kla++y+     
   CTQ30085.1  74 NTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVENQLAKQPLHSQELLD-PLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAAIKLAKAYQS---P 167
                  5799*************************************999955555.5566799*********************************654...6 PP

                  CTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETTTTSEB--CCH CS
  Aminotran_3 117 tektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqgegGvvvaspef 214
                    k  +ia +gafHG+ lgals+t++ +  ++ f p+lp++ ++++ d ++          +  +l++  kk  d+vaAvi+EpiqgegGv+ ++ ++
   CTQ30085.1 168 RGKFTFIATSGAFHGKSLGALSATAK-STFRKPFMPLLPGFRHVPFGDITA----------MRTMLSE-CKKTGDDVAAVILEPIQGEGGVILPPTGY 253
                  6999**********************.********************9333..........3334444.36899************************ PP

                  HHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTT.SS-EEEEEEHHHHTTS-TTS..B--TTTT-HHHHHHHHHHHHHHH CS
  Aminotran_3 215 laklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgG.lplsavlataevmqalapgs..hgsTfgGnplacavalavleiie 309
                  l ++r+lc++ ++lli DEvqtG+GrTGk+fA+eh +v+pD+++laKal+gG +p+ a++at+ev ++l ++   h +TfgGnplaca+ala+++++ 
   CTQ30085.1 254 LPAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGvMPIGATVATEEVFSVLFDNPflHTTTFGGNPLACAAALATINVLL 351
                  ********************************************************************9666699*********************** PP

                  HTTHHHHHHHHHHHHHHHHHHHCTT-.TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETT..TEEEE---TT--HHHHHHHHHHHHH CS
  Aminotran_3 310 eekllenaqelgaalkegLeelqkky.evikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGd..nvirllppliitdeeidelleilkk 404
                  +++l  +a+++g++l +g + l+++y + ++evRgkG+++aie+++++    ++++ ++  + vl+ ++ +  ++ir+ ppl+ t e+++++l++  k
   CTQ30085.1 352 TQNLPAQAAQKGDMLLDGFRLLAQEYpDLVNEVRGKGMLMAIEFVDNEI--GYDFASEMFRQRVLVAGTLNnaKTIRIEPPLTLTLEQCEQVLKAARK 447
                  **************************9**********************..56888777777777665555489*******************99888 PP

                  HH CS
  Aminotran_3 405 al 406
                  al
   CTQ30085.1 448 AL 449
                  76 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.8e-05      0.34      81     117 ..     417     453 ..     405     456 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.8e-05
                   HHHHTT-EEEEESSS-SSHHHHHHHHHHHHHHTS-EE CS
  GFO_IDH_MocA  81 aaleagkhvllEKPlattveeakelvelaekkgklvs 117
                     l++ k + +E Pl++t+e++++++++a+k+   + 
    CTQ30085.1 417 GTLNNAKTIRIEPPLTLTLEQCEQVLKAARKALAALR 453
                   5688889999********************9876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3520.79
//
Query:       CTQ30086.1  [L=44]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       171  (0.00953762); expected 358.6 (0.02)
Passed bias filter:                      169  (0.00942607); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 336.50
//
Query:       CTQ30087.1  [L=98]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-19   67.7   0.0    8.4e-19   67.5   0.0    1.1  1  ABM       Antibiotic biosynthesis monooxygenase


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   4.7e-23   8.4e-19       4      77 ..       4      76 ..       1      77 [. 0.95

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 4.7e-23
                EEEEEEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEETSTTEEEEEEEESSHHHHHHHHTSHHHHHHHH CS
         ABM  4 viaeirvkpgqaeafldafaeavesllaeepGclgyellrstedpdevvvieeWeseaaleahlksphfkaahe 77
                  +ei +kp++ ++fl++f++++e+   +epG+l++++l+++e +++++++e +++ +a++ah k+ph+ a++e
  CTQ30087.1  4 TLVEINIKPERVDEFLEVFRANHEGA-LQEPGNLRFDVLQDPEVKTRFFIYEAYKDDEAVLAHKKTPHYLACVE 76
                5789********************99.5*******************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 782.74
//
Query:       CTQ30088.1  [L=295]
Description: putative aldolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-17   63.6   0.0    3.1e-17   63.0   0.0    1.3  1  DeoC      DeoC/LacD family aldolase
  ------ inclusion threshold ------
      0.031   13.6   0.1       0.16   11.2   0.0    1.9  2  ThiG      Thiazole biosynthesis protein ThiG


Domain annotation for each model (and alignments):
>> DeoC  DeoC/LacD family aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   3.5e-21   3.1e-17       2     234 ..      52     258 ..      51     259 .. 0.86

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 3.5e-21
                 EEEEECCSHHHHHHHHCTSSHHHHHHHHHHHHHHGG...GSSEEEEETTTHHHHHHCSCTTSEEEEETECSSCCTTSTTEEEETTCHHHHHHHTT-SEE CS
        DeoC   2 vilavDqrvankddtasaqneqledlkalvkealtp...gasavlldpgviasaskeyakdiallvkldkgtyllkskqrdvdevasveeakalGAdav 97 
                 v+la+D++   ++ t+           + ++  ++p    +++ + + gv++s ++  a + +++++++ g+ +l++ + + + +   e a++l   av
  CTQ30088.1  52 VMLAFDHGYFQGPTTGL----------ERIDLSIAPlfaDTDVLMCTRGVLRS-QVPAATNKPVVLRASGGNSILSELSNECV-AVAMEDALRLNVCAV 138
                 67777777777777777..........34444455543255555555555544.45555699*************99999988.999************ PP

                 EEEEEEHTTTTCHHHHHHHHHHHHHHHHHHHTEEEEEE.EEE-CTTBSSTTCHHHHHHHHHHHHTCCT-SEEEE--SSCC.B.HHHHHHHHHHHHHCHS CS
        DeoC  98 kvvvyyradgseeeqqklaeikrvkeacheeglplile.lylrdeaikdekvdpdlvaeAarvsaelGaDiiKvevpkevvnateedaevfkdvikaap 195
                  + vy+   gse+e q +++i +   a + +g+p+++  ++ ++ +      d++    A+r++ae+Ga ++K+ +           +e f++v++++p
  CTQ30088.1 139 AAQVYI---GSEYEHQSINNIIKLVDAGNRYGMPVLAVtGVGKEMT-----RDARYFSLASRIAAEMGAQFVKTYFV----------EEGFEKVTASCP 219
                 ******...****************************999999999.....6899*******************999..........899********* PP

                 STEEEEETTS..SHHHHHHHHHHHHHHHTHCEEEESHHHHT CS
        DeoC 196 vpgvvlsGGv..seedfletvedAvkeagasGvlsGRaifq 234
                 vp +v++GG    e + le+   A+ ++gasGv +GR+ifq
  CTQ30088.1 220 VP-IVIAGGKklPEHEALEMCWRAI-DQGASGVDMGRNIFQ 258
                 **.******99988888999*****.**************9 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.053   4.7e+02     132     162 ..     151     181 ..     137     194 .. 0.77
   2 ?   11.2   0.0   1.8e-05      0.16     167     236 ..     211     285 ..     187     292 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.053
                 S-HHHHHHHHHTT-SEBEEBSSSTTS----S CS
        ThiG 132 dDlvlarrleevGcaavmPlaapiGsglGll 162
                 + +    +l ++G +  mP+ a  G g+ ++
  CTQ30088.1 151 QSINNIIKLVDAGNRYGMPVLAVTGVGKEMT 181
                 5555566899999999999999999887665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 1.8e-05
                 HHHHHHH-SS-BEEES---SHHHHH.....HHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHHHHH--- CS
        ThiG 167 lkiiieeakvPvivDAGigspsdaa.....qamelGadavllntavaeakdpvamArafklaveaGrlaylagri 236
                 ++ +++++ vP+++  G   p++ a      a++ Ga++v +   + +++ p am +a+k+ v+    a++a + 
  CTQ30088.1 211 FEKVTASCPVPIVIAGGKKLPEHEAlemcwRAIDQGASGVDMGRNIFQSSAPRAMLKAVKKVVHENLNAREAYQF 285
                 566778889************99762222347789****************************999999888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2136.37
//
Query:       CTQ30089.1  [L=333]
Description: AI2 transporter; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-54  184.4   3.0    3.5e-54  184.1   3.0    1.0  1  Peripla_BP_4     Periplasmic binding protein domain
     0.0013   18.2   0.0      0.002   17.6   0.0    1.2  1  Peripla_BP_1     Periplasmic binding proteins and sugar bindi
     0.0018   18.0   5.4      0.094   12.4   0.1    2.4  2  Peripla_BP_6     Periplasmic binding protein
  ------ inclusion threshold ------
      0.048   13.6   0.1       0.25   11.3   0.0    2.0  2  Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.1   3.0   7.8e-58   3.5e-54       1     256 [.      23     278 ..      23     280 .. 0.97

  Alignments for each domain:
  == domain 1  score: 184.1 bits;  conditional E-value: 7.8e-58
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CE CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerl 97 
                   i++++k  + +ff++ ++g++ea k+lg++vt++g++e++++ Qv+ i++++++g+++iiv++v++++l palk+a+++G++V ++dsd+ p+ + +
    CTQ30089.1  23 IAFIPKLVGVGFFTSGGNGAKEAGKALGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTRPECRSI 119
                   799**************************************************************************************99****** PP

                   EEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH.-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSC CS
  Peripla_BP_4  98 ayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke.ypgikivaevaganwdaekaqqalealltanp.ldgilaand 192
                   +  + + ++ G l+ e++ +++ + ++kv+ ++ sp+ ++++++++ +++ +++ +p+++iv+++ g  +da+k+ q +e +l+a+p ld+i+a+++
    CTQ30089.1 120 YINQGTPQQLGGLLVEMAEKQVTKPTAKVAFFYSSPTVTDQNQWVKEAKAKIEKeHPQWQIVTTQFG-YNDATKSLQTAEGILKAYPdLDAIIAPDA 215
                   ***********************99*****************************999*****96444.8***************9966********* PP

                   CHHHCHHHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT CS
  Peripla_BP_4 193 gmaegalealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkG 256
                   ++ ++a++a e+  ++g   ++g+ +++ ++ +++ Gt++a+ ++d  ++g+ av +a +llk+
    CTQ30089.1 216 NALPAAAQAAENLKRQGVA-IVGFSTPNVMRPYVERGTVKAFGLWDVVQQGKIAVNVADRLLKK 278
                   ************9999885.*****************************************985 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.4e-07     0.002      12     202 ..      31     228 ..      20     246 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.4e-07
                   TSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH...HHHHHHHHTT-SEEEEE..-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EEEE-.H CS
  Peripla_BP_1  12 dePffldlvkgitkaakehgvdvlllaageeedla...kaidllkakgidgliia..tsdtsfdditakaesgipvialedaidapdgvPcvipd.d 102
                    + ff +  +g+++a+k++gvdv+   ++ e+ +    + i+   ++g +++i+   ++d+  +++++  + g++v+  +     p    c     +
    CTQ30089.1  31 GVGFFTSGGNGAKEAGKALGVDVTY-DGPTEPSVSgqvQLINNFVNQGYNAIIVSavSPDGLCPALKRAMQRGVKVLTWDSD-TRP---ECRSIYiN 122
                   567999999**************96.77777777756688899999********966777779***9999999****99988.555...34444324 PP

                   HHHHHHHHHHHHHHHHHHTG....EEEEEE-TTSHHHHHHHHHHHHHHHTT-...GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHH CS
  Peripla_BP_1 103 tqageestqkLiaeghkrpi....allegpesaltakervqGflaalaeaGl...evkdvhvalgsndiedaaealnelleshPeidaivaindeaa 192
                       ++ +  L++ + k+ +    a ++   s+ t+    q   +a+a+        ++v    g nd ++  + ++ +l+  P++dai+a  ++a 
    CTQ30089.1 123 QGTPQQLGGLLVEMAEKQ-VtkptAKVAFFYSSPTVTDQNQWVKEAKAKIEKehpQWQIVTTQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANAL 218
                   445568888899999998.888888888889999999999999999999966444456666677889999999999***************988877 PP

                   HHHHHHHHHT CS
  Peripla_BP_1 193 lGavlalkke 202
                     a++a++  
    CTQ30089.1 219 PAAAQAAENL 228
                   7766666543 PP

>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   2.1e-05     0.094     146     216 ..      33     104 ..       9     114 .. 0.86
   2 !    6.7   1.7    0.0011       4.9     120     225 ..     127     238 ..     105     251 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.1e-05
                   HHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT-SE.EEEESSHHHHHHHHHHHHHTT-S CS
  Peripla_BP_6 146 afgregiaalkaaakaaGgevvgeepvplgttdfsaqvlqikaagada.vllagtgadlaallkaaaeaGld 216
                    f ++g +++k+a ka+G++v  + p++++ + +  +++++ ++g +a ++ a  ++ l+ +lk a + G++
    CTQ30089.1  33 GFFTSGGNGAKEAGKALGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAiIVSAVSPDGLCPALKRAMQRGVK 104
                   56678899****************************************8888899999***********998 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0011
                   HHHHHHHHHHHHHTTSC...EEEEEEES..SHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHH...HHTTT-SE.EEEESSHHHHHHHH CS
  Peripla_BP_6 120 aqasalveylakelggk...kvalvyad..yafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlq...ikaagada.vllagtgadlaall 207
                   +q+ +l+  +a+++  k   kva++y+       +++++ +ka +++++ +  + +++++g++d +  ++    i +a +d   ++a ++++l+a++
    CTQ30089.1 127 QQLGGLLVEMAEKQVTKptaKVAFFYSSptVTDQNQWVKEAKAKIEKEHPQW-QIVTTQFGYNDATKSLQTaegILKAYPDLdAIIAPDANALPAAA 222
                   4444444445654432233488888876545556788889999999999885.56778888888877555422267788888777777777777777 PP

                   HHHHHTT-SSSCEEEECC CS
  Peripla_BP_6 208 kaaaeaGldakrillvsw 225
                   +aa+    ++  +++v++
    CTQ30089.1 223 QAAENLKRQG--VAIVGF 238
                   7776665554..444333 PP

>> Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.6e-05      0.25      53      99 ..     160     207 ..     122     211 .. 0.80
   2 ?   -0.7   0.0      0.26   1.2e+03      56      80 ..     220     242 ..     216     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.6e-05
  Glyco_tran_WecB  53 kpevlekaaerlrekypglriagthdgy.keeeeeaiieainaskpdl 99 
                      +++++++a++++++++p+ +i++t+ gy +++++ + +e i ++ pdl
       CTQ30089.1 160 QNQWVKEAKAKIEKEHPQWQIVTTQFGYnDATKSLQTAEGILKAYPDL 207
                      46799***********************87788888888888888875 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.26
  Glyco_tran_WecB  56 vlekaaerlrekypglriagthdgy 80 
                       +++aae+l+++  g+ i+g++ ++
       CTQ30089.1 220 AAAQAAENLKRQ--GVAIVGFSTPN 242
                      578999999999..89999999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2442.02
//
Query:       CTQ30090.1  [L=332]
Description: AI2 transporter; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-44  149.8  41.0    9.7e-44  149.5  41.0    1.1  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5  41.0   5.4e-48   9.7e-44       2     268 .]      35     305 ..      34     305 .. 0.97

  Alignments for each domain:
  == domain 1  score: 149.5 bits;  conditional E-value: 5.4e-48
  BPD_transp_2   2 ilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvgl 98 
                   +l+ ++ ++ ++i+Al+l+lv+ i+G+i+++ g+ ++l+a++ +++ +++ + l+la+ + ll+g+++gl++++l++++++ +l+itl++l++  g 
    CTQ30090.1  35 LLFSTSDFICIGIVALPLTLVI-ISGGIDISLGSTIGLCAIALGVMTQAGWP-LWLAVSLTLLLGLLCGLFNAALIHYTGISPLVITLGTLYLYGGG 129
                   567788999*************.**************************999.******************************************** PP

  BPD_transp_2  99 tlllltgitsgvkgqssvkellgfagallsflsaviv......llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgal 189
                   +l     + sg++g ++  ++ gf++ +  f+   ++      +l+++++++++ll +r rfGr+l+ +g+n++aar++ ++v+ +  +++ + g+ 
    CTQ30090.1 130 AL-----LLSGMAGATGYEGIGGFPDSFTAFANLTLAglplplVLFAIITFFFWLLTHRGRFGRHLFLLGQNPRAARYAALSVNGIPYVLYGLVGVA 221
                   **.....999999999999999999999999998888999999****************************************************** PP

  BPD_transp_2 190 AglaGallalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   +++a+++++ ++gs+  + g  l + a++a+vlGga      gs+lg  ++al++g++++ +l+++gip++++++l+gall++v+
    CTQ30090.1 222 SAVAALVMVSYFGSARSDLGRDLLMPALTAAVLGGAniyggsGSILGSALAALLVGYLQQ-GLQMVGIPNQVSSALSGALLVVVV 305
                   ************************************************************.*********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2531.79
//
Query:       CTQ30091.1  [L=344]
Description: AI2 transporter; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-46  157.1  42.2    4.6e-46  157.1  42.2    1.4  2  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.2      0.33   5.9e+03     137     146 ..      14      23 ..       8      28 .. 0.41
   2 !  157.1  42.2   2.6e-50   4.6e-46       3     268 .]      37     300 ..      35     300 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.33
  BPD_transp_2 137 lalllvlavl 146
                   +a++++++vl
    CTQ30091.1  14 FAIVALFVVL 23 
                   2222222222 PP

  == domain 2  score: 157.1 bits;  conditional E-value: 2.6e-50
  BPD_transp_2   3 lnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvglt 99 
                   +++ +++ il ++AlG +lv+ +++ i+ ++g+ ++l+a++++++l+++   l++a+++al++ga++g+++gllv+ l+++ +++tl++l + +g++
    CTQ30091.1  37 AMIFASSQILCLLALGATLVM-LTRNIDVSVGSTVGLCAIAVGVALNNGYG-LATAIAFALAIGALAGAFNGLLVVGLRIPAIVATLGTLGLYRGVM 131
                   67889999*************.**************************998.********************************************* PP

  BPD_transp_2 100 lllltgitsgvkgqssvkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaGal 196
                   l l+tg+++ +  ++s k l++     ++ +++ + +l+l+l+la  +ll rt fGr  +avg+n  aar lG+ v+r+++l+f++ g+lA+ aG++
    CTQ30091.1 132 L-LWTGGKWIEGLPDSLKSLSEP----AFIGVSPLGWLVLALLLAGGWLLSRTAFGRDFYAVGDNLAAARQLGVAVNRTRMLAFILNGMLAACAGIV 223
                   *.888888888776666666554....4455555669************************************************************ PP

  BPD_transp_2 197 lalllgsippnigvglgfnaiaavvlGga......gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   +a+++g++p ++g gl+++aiaa+vlGg+      g+llg+++Ga+ +  +++  l l+  p ++++++ g++l+ vl
    CTQ30091.1 224 FAAQIGFVPNQTGSGLEMKAIAACVLGGIsllggtGTLLGAFLGAFFLTQIDT-VLVLFRLPAWWNDFIAGLVLLGVL 300
                   *****************************************************.99999999************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2471.49
//
Query:       CTQ30092.1  [L=495]
Description: fused AI2 transporter subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-50  170.4   0.0      1e-26   94.1   0.0    2.3  2  ABC_tran     ABC transporter
    1.5e-13   51.3   0.1     0.0025   17.7   0.0    3.2  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00066   19.6   0.0      0.058   13.3   0.2    2.9  3  RsgA_GTPase  RsgA GTPase
     0.0042   16.8   0.2      0.022   14.5   0.0    2.2  2  AAA_30       AAA domain
     0.0068   16.2   0.2      0.016   15.0   0.1    1.7  2  MukB         MukB N-terminal
  ------ inclusion threshold ------
      0.012   15.4   0.6      0.031   14.0   0.2    1.9  2  AAA_29       P-loop containing region of AAA domain
      0.032   13.7   0.0        3.6    7.0   0.1    2.3  2  SMC_N        RecF/RecN/SMC N terminal domain
       0.07   13.6   0.8        0.1   13.1   0.1    1.6  2  AAA_23       AAA domain
      0.095   12.9   0.7        3.2    7.9   0.1    3.2  2  AAA_33       AAA domain
       0.12   12.7   3.3        2.1    8.6   1.6    3.3  3  AAA_22       AAA domain
       0.13   11.0   3.5        1.4    7.6   0.0    3.0  3  ABC_ATPase   Predicted ATPase of the ABC class
       0.16   12.2   0.3        1.3    9.2   0.2    2.5  3  AAA_28       AAA domain
       0.17   11.9   1.2        6.1    6.9   0.1    2.5  2  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
        1.1    8.8   4.4        9.2    5.8   0.1    3.5  4  AAA_25       AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.0   8.1e-30     1e-26       1     137 []      20     162 ..      20     162 .. 0.90
   2 !   74.2   0.0   1.1e-23   1.4e-20       3     136 ..     274     422 ..     272     423 .. 0.89

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 8.1e-30
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren......esdeeiekalskl 92 
                 lk ++++l +g+++a++G nGaGKStL+k++ag ++p++Ge+++ ++ + +  +    +  i  +pqep lfp+l+vren      ++ +  +++ +kl
  CTQ30092.1  20 LKGIDFTLCAGQVHALMGGNGAGKSTLMKIIAGVETPDSGELTIGDRAFARlSPALAHQLGIYLVPQEPMLFPNLSVRENilfrlpKRADTTARLQEKL 118
                 789**********************************************998888899999************************96666666666666 PP

                 TTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  93 glkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++ ++ + +++ s+s+L    +q+v++ r l++++++l+lDEpta
  CTQ30092.1 119 QQLNC-QINLDASASTLEVADQQMVEILRGLMREARILILDEPTA 162
                 66663.33456777*****************************97 PP

  == domain 2  score: 74.2 bits;  conditional E-value: 1.1e-23
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH..............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx..............xxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren..............esde 83 
                 +++l++++ge+v++ G  G+G + ++++l+gl  p +G+i+l+++++++  ++ +l + + +lp++   + lf +  vr n               + +
  CTQ30092.1 274 DLNLEIRAGEIVGLAGLVGSGRTEFAETLYGLRPPRAGRIWLENREISNdSTRARLASGLVYLPEDrqvSGLFLDAPVRWNtvmfnqpswwqqgkREAA 372
                 689*******************************************999789999***********777778888888888****99999865544444 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  +e++++ lg+k  + +      ++LSgG +q+v lar+l  +p ll++DEpt
  CTQ30092.1 373 VVERYHRALGIKLADGDQP---VRTLSGGNQQKVLLARCLEANPLLLIVDEPT 422
                 4999999999998665554...5*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.8e-06    0.0035       2      83 ..      33     113 ..      32     146 .. 0.71
   2 !   12.8   0.1   6.1e-05     0.078     258     298 ..     152     192 ..     131     196 .. 0.90
   3 !   17.7   0.0   1.9e-06    0.0025     229     296 ..     387     451 ..     338     454 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.8e-06
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv 83 
                  +l G Ng+GKS+L++++ ++   d+     +d +  + +++    l     p +p+ f     + +++ +r   r +  + 
  CTQ30092.1  33 HALMGGNGAGKSTLMKIIAGVETPDSGELTIGDRAFARLSPALAHQLGIYLVPQEPMLFPNL-SVRENILFRLPKRADTTAR 113
                 5799**************88744366666666666666666666666666666666666666.6666666666666666555 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 6.1e-05
      AAA_21 258 gsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 +++l++DEp ++L P  ++rl+  +++l++ ++ +++ +H 
  CTQ30092.1 152 ARILILDEPTASLTPGETERLFSQIRALQALDVGIVFISHK 192
                 39**************************************6 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 1.9e-06
      AAA_21 229 gqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296
                 +++ p+r lS G ++   ll+ +l+a++   ll++DEp  g + ++ + +++llk+ ++ ++ v++ +
  CTQ30092.1 387 DGDQPVRTLSGGNQQK-VLLARCLEANP--LLLIVDEPTRGVDVSARADIYQLLKSVAAQNVAVLMIS 451
                 6788999*********.**********9..79***********************9999999997765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   4.5e-05     0.058      96     123 ..      27      54 ..      15      65 .. 0.84
   2 ?   -3.1   0.0       4.8   6.1e+03      67     106 ..     174     215 ..     167     217 .. 0.60
   3 ?    2.8   0.0     0.078     1e+02      71     122 ..     253     305 ..     242     350 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.5e-05
                  HCTTSEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallpel 123
                  l+++++ +l+G  G+GKStL++ +++ +
   CTQ30092.1  27 LCAGQVHALMGGNGAGKSTLMKIIAGVE 54 
                  46789****************9998754 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.8
                  HHHHHHHHTTSEEEE--TTTHTTHHHHHH...HCTTSEEEEEC CS
  RsgA_GTPase  67 elkeelealgyevllvsaktkegleelke...llkdktsvlvG 106
                  ++  +l+al++ ++++s k   ++++l++   +++d  +vl G
   CTQ30092.1 174 SQIRALQALDVGIVFISHKL-PEIRQLAShisVMRDGAVVLSG 215
                  56677888888888888773.3445554400045566667766 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.078
                  HHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  71 elealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                  +++a +++vl v+  t+eg+ +l+ +++  +++ l+G  G G++ + ++l + 
   CTQ30092.1 253 RTQAQDFPVLRVEDLTGEGFIDLNLEIRAgEIVGLAGLVGSGRTEFAETLYGL 305
                  56788999****************9999889*************999998764 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.7e-05     0.022      17     113 ..      30     177 ..      23     189 .. 0.61
   2 ?   -1.1   0.0         1   1.3e+03      89     121 ..     412     449 ..     371     452 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.7e-05
      AAA_30  17 gdrvavltGpAGtGKttalkalreaweaa.ggrviglAptg....kaAkvLa.................eelgi.......eastiakllkrlk..... 81 
                 g +v++l G+ G+GK+t++k ++ + + + g+  ig    +    + A++L+                 e           +a+t+a+l ++l+     
  CTQ30092.1  30 G-QVHALMGGNGAGKSTLMKIIAGVETPDsGELTIGDRAFArlspALAHQLGiylvpqepmlfpnlsvrE---NilfrlpkRADTTARLQEKLQqlncq 124
                 3.599*****************999888867444443333300003444444444444444444444331...03345555888888888777777788 PP

      AAA_30  82 ......................grarlepgtllivDE.agmvdtkqlaallkaae 113
                                       g   ++++++li DE ++ +   ++++l+++++
  CTQ30092.1 125 inldasastlevadqqmveilrG--LMREARILILDEpTASLTPGETERLFSQIR 177
                 88888887777777777776432..344557777777323345555666666655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1
      AAA_30  89 g.tllivDEagmv....dtkqlaallkaaekagakvil 121
                 +  llivDE        + +++ +llk+++++++ v++
  CTQ30092.1 412 NpLLLIVDEPTRGvdvsARADIYQLLKSVAAQNVAVLM 449
                 44689999976433333566777888888887777776 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.3e-05     0.016      27      58 ..      31      62 ..      24      82 .. 0.87
   2 ?   -3.3   0.0       4.9   6.3e+03      25      35 ..     389     399 ..     385     401 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
                HHHHHHS--SHHHHHHHHHHHHHHS--TTT-- CS
        MukB 27 lvttlsGgnGaGksttmaafvtaliPdlsllh 58
                 v +l GgnGaGkst m  +  +  Pd   l 
  CTQ30092.1 31 QVHALMGGNGAGKSTLMKIIAGVETPDSGELT 62
                6899**************99999999988775 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.9
                 HHHHHHHHS-- CS
        MukB  25 delvttlsGgn 35 
                 d+ v tlsGgn
  CTQ30092.1 389 DQPVRTLSGGN 399
                 899*******9 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   2.4e-05     0.031      23      40 ..      30      48 ..      20      60 .. 0.78
   2 ?   -3.2   0.0       5.6   7.2e+03      18      35 ..     278     295 ..     272     297 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-05
      AAA_29 23 g.atlltGpsGsGKSTllD 40
                g ++ l+G +G+GKSTl+ 
  CTQ30092.1 30 GqVHALMGGNGAGKSTLMK 48
                45899************95 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.6
      AAA_29  18 eidlkgatlltGpsGsGK 35 
                 ei+  +++ l+G  GsG 
  CTQ30092.1 278 EIRAGEIVGLAGLVGSGR 295
                 555444788999999996 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0028       3.6      25      44 ..      31      50 ..      23      53 .. 0.86
   2 ?    4.3   0.0     0.019        24     135     198 ..     126     453 ..      93     472 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0028
                SEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldAi 44
                ++ a++G NG+GKs l+  i
  CTQ30092.1 31 QVHALMGGNGAGKSTLMKII 50
                6889***********99766 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.019
                 T.................................................................................................. CS
                 x.................................................................................................. RF
       SMC_N 135 e.................................................................................................. 135
                 +                                                                                                  
  CTQ30092.1 126 Nldasastlevadqqmveilrglmrearilildeptasltpgeterlfsqiralqaldvgivfishklpeirqlashisvmrdgavvlsgetatyrdeq 224
                 333333333333333333333344444444444444444444444444444444447777777777777777777777777777777777777777777 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CTQ30092.1 225 lisamtpasrdhtlsdtqklwlalpgnrrtqaqdfpvlrvedltgegfidlnleirageivglaglvgsgrtefaetlyglrppragriwlenreisnd 323
                 777778888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                 ......................................................................CS-HHHHHHHHHHHHHHHHCCS--SEEEE CS
                 ......................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 ......................................................................lLSgGektLvalaLlfAiqkvkpaplyll 164
                                                                                       +LSgG+++ v la      +++p  l ++
  CTQ30092.1 324 strarlasglvylpedrqvsglfldapvrwntvmfnqpswwqqgkreaavveryhralgikladgdqpvrTLSGGNQQKVLLARC---LEANPL-LLIV 418
                 8888888888888888888888888888888888888888888888888888888888888888888888999998887666644...333433.5678 PP

                 CTTTTTS-HHHHHHHHHHHHHHC.TTSEEEEE-SS CS
                 xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
       SMC_N 165 DeidaaLDeknvkkvaellkeks.knaQfivislr 198
                 De     D + ++ + +llk+   +n+ +++is +
  CTQ30092.1 419 DEPTRGVDVSARADIYQLLKSVAaQNVAVLMISSD 453
                 99999999999999999999654144556655544 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   8.1e-05       0.1      15      41 ..      23      52 ..      13      81 .. 0.80
   2 ?   -2.8   0.1         6   7.7e+03     186     199 ..     112     125 ..      93     144 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.1e-05
      AAA_23 15 idF...skgltlItGpNGaGKTTildAikl 41
                idF      + ++ G NGaGK+T++  i  
  CTQ30092.1 23 IDFtlcAGQVHALMGGNGAGKSTLMKIIAG 52
                55555555788999***********98875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6
      AAA_23 186 eeleeeleeilkel 199
                   l+e+l++++ ++
  CTQ30092.1 112 ARLQEKLQQLNCQI 125
                 34455555544443 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0025       3.2       3     106 ..      34     159 ..      32     198 .. 0.58
   2 ?    1.8   0.1      0.19   2.4e+02       4      21 ..     287     304 ..     284     454 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0025
      AAA_33   3 llvGlpGsGKstlaerllkklg...avllssdtlrrrlfgtdqqskt...................dytrvldrlyqilnelarkalsagrnvildatn 79 
                  l G +G+GKstl + ++  ++   ++l   d ++ rl +   +++                     + r+ +r+  + ++l +k ++ ++++ lda  
  CTQ30092.1  34 ALMGGNGAGKSTLMKIIAGVETpdsGELTIGDRAFARLSPALAHQLGiylvpqepmlfpnlsvrenILFRLPKRADTT-ARLQEKLQQLNCQINLDASA 131
                 678999********9998777778888877888677776633333333344444455555554444334444444433.35555555555556665555 PP

      AAA_33  80 lsr.rerarflklarrlgvpvrivvvet 106
                  +   + +++++++r l  + ri++++ 
  CTQ30092.1 132 STLeVADQQMVEILRGLMREARILILDE 159
                 5531222455555554444444444443 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.19
      AAA_33   4 lvGlpGsGKstlaerllk 21 
                 l Gl GsG + +ae l+ 
  CTQ30092.1 287 LAGLVGSGRTEFAETLYG 304
                 678889999999988853 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.6    0.0017       2.1       9     117 ..      34     181 ..      29     199 .. 0.65
   2 ?    0.1   0.0      0.72   9.2e+02      10      32 ..     287     309 ..     280     349 .. 0.71
   3 ?   -1.2   0.0       1.7   2.2e+03      91     115 ..     410     440 ..     371     454 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0017
      AAA_22   9 vvtGesGtGKTtllrrlleql..deeakaee..................................erpevvfvtlpsstsskdllrellralglelka. 70 
                 +++G  G+GK+tl++ ++     d      e                                    +e +++ lp+                   ++ 
  CTQ30092.1  34 ALMGGNGAGKSTLMKIIAGVEtpDSG----EltigdrafarlspalahqlgiylvpqepmlfpnlSVRENILFRLPKRA-----------------DTt 111
                 78999999****99998764400333....2445699999999988666666666666666666655555555555555.................333 PP

      AAA_22  71 .................erlsseell.ealeqalrarav.ielliiDEaqh.lr...seealeeLrslln 117
                                  + +s+ e+  +++ + lr  ++  ++li+DE    l+   +e++++++r l+ 
  CTQ30092.1 112 arlqeklqqlncqinldASASTLEVAdQQMVEILRGLMReARILILDEPTAsLTpgeTERLFSQIRALQA 181
                 33333333333334445344666666699******999999*******8887855433777777776655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.72
      AAA_22  10 vtGesGtGKTtllrrlleqldee 32 
                 + G +G+G+T  +++l    + +
  CTQ30092.1 287 LAGLVGSGRTEFAETLYGLRPPR 309
                 67999******999987766555 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.7
      AAA_22  91 v..ielliiDEaqh.lr...seealeeLrsl 115
                    + lli+DE  + ++   ++++++ L+s 
  CTQ30092.1 410 EanPLLLIVDEPTRgVDvsaRADIYQLLKSV 440
                 1445789999877766553335555555554 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.2     0.037        47     245     264 ..      30      50 ..      11      55 .. 0.85
   2 ?   -0.8   0.0      0.39     5e+02     322     351 ..     128     162 ..     118     164 .. 0.71
   3 ?    7.6   0.0    0.0011       1.4     384     413 ..     440     469 ..     396     486 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.037
                 S.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 245 G.vtlIvGggfhGKsTLLeAl 264
                 G v +++Gg+  GKsTL++ +
  CTQ30092.1  30 GqVHALMGGNGAGKSTLMKII 50 
                 4578899**********9976 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.39
                 S--HHH.....HHHHHHHHHHHTT-SEEEEEGGGS CS
  ABC_ATPase 322 dASGSt.....sqAanimealeagakllLiDEDts 351
                 dAS St      q ++i + l ++a++l++DE t+
  CTQ30092.1 128 DASASTlevadQQMVEILRGLMREARILILDEPTA 162
                 777777322223556788889999********876 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0011
                 HHHH--EEEEEESS-GCCTTT-SEEEEEET CS
  ABC_ATPase 384 ykklgvstilvvggsgdyldvAdtvilmee 413
                 ++  +v ++++++ +++++ +Ad+v++m++
  CTQ30092.1 440 VAAQNVAVLMISSDLDEFIGLADRVLVMHQ 469
                 36779***********************98 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2     0.001       1.3       3      24 ..      34      55 ..      32      76 .. 0.82
   2 ?   -2.3   0.0       3.6   4.6e+03     131     153 ..     104     126 ..      67     133 .. 0.79
   3 ?   -0.7   0.0       1.1   1.5e+03     121     147 ..     417     443 ..     370     456 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.001
      AAA_28  3 vitGgestGKTtlleaLaargy 24
                +++Gg ++GK+tl++ +a  ++
  CTQ30092.1 34 ALMGGNGAGKSTLMKIIAGVET 55
                799************9985544 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.6
      AAA_28 131 leereaiderlrealrelgipvi 153
                 l +r+++++rl+e l++l+ ++ 
  CTQ30092.1 104 LPKRADTTARLQEKLQQLNCQIN 126
                 56788999999999999988765 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.1
      AAA_28 121 idddgeRredleereaiderlrealre 147
                 i+d  +R  d+ +r++i+++l+++  +
  CTQ30092.1 417 IVDEPTRGVDVSARADIYQLLKSVAAQ 443
                 3788899999999****9999987655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0047       6.1      19      40 ..      30      51 ..       8      57 .. 0.82
   2 ?    3.1   0.1      0.07        89      19      39 ..     282     302 ..     268     305 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0047
                TEEEEEEESTTSSHHHHHHHHH CS
        TsaE 19 gdvilLeGdLGaGKTtlvrgla 40
                g+v +L G  GaGK+tl++ +a
  CTQ30092.1 30 GQVHALMGGNGAGKSTLMKIIA 51
                78899*************9886 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.07
                 TEEEEEEESTTSSHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrgl 39 
                 g+++ L G +G+G T ++  l
  CTQ30092.1 282 GEIVGLAGLVGSGRTEFAETL 302
                 78999************9876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0072       9.2      30      50 ..      27      47 ..      19      64 .. 0.90
   2 ?   -1.5   0.0       1.2   1.5e+03      98     134 ..     137     173 ..     106     191 .. 0.43
   3 ?    2.3   0.1     0.083   1.1e+02      67     108 ..     306     347 ..     285     451 .. 0.79
   4 ?   -1.0   0.0      0.86   1.1e+03      65      97 ..     438     471 ..     427     491 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0072
      AAA_25 30 lpagelallaGapgtGKttla 50
                l ag +++l+G  g+GK+tl 
  CTQ30092.1 27 LCAGQVHALMGGNGAGKSTLM 47
                56899**************95 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.2
      AAA_25  98 rddarllvldlagveslpLfakdrggtlltadvdale 134
                 +d++ + +l +  +e + L+ ++   +l+++++++l 
  CTQ30092.1 137 ADQQMVEILRGLMREARILILDEPTASLTPGETERLF 173
                 3333333333222133333333333333444444444 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.083
      AAA_25  67 vapeqgkVlyvsaEdsedelrrRlravgealrddarllvldl 108
                 ++p+ g+ ++ + E s+d +r Rl+  +  l++d+++  l l
  CTQ30092.1 306 RPPRAGRIWLENREISNDSTRARLASGLVYLPEDRQVSGLFL 347
                 457999999999999999999999988888877766665553 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.86
      AAA_25  65 gpvapeqgkVlyvsaEdsed.elrrRlravgeal 97 
                 ++va ++++Vl++s + +e  +l+ R+  +++ +
  CTQ30092.1 438 KSVAAQNVAVLMISSDLDEFiGLADRVLVMHQGR 471
                 4567788999999999886558888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 3666.00
//
Query:       CTQ30093.1  [L=323]
Description: DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-64  217.7   0.4    1.8e-64  217.4   0.4    1.1  1  Sugar-bind  Putative sugar-binding domain
    0.00013   21.4   0.0     0.0004   19.8   0.0    1.8  1  Sigma70_r4  Sigma-70, region 4
      0.001   18.9   0.0     0.0047   16.8   0.0    2.2  2  MarR_2      MarR family
     0.0016   18.4   0.0     0.0059   16.6   0.0    1.9  1  HTH_Crp_2   Crp-like helix-turn-helix domain
  ------ inclusion threshold ------
      0.035   13.7   0.0       0.12   11.9   0.0    2.0  1  HTH_24      Winged helix-turn-helix DNA-binding
       0.09   13.1   1.5        1.6    9.2   0.1    3.0  3  HTH_31      Helix-turn-helix domain
      0.094   12.7   0.0       0.31   11.0   0.0    1.9  1  HTH_37      Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Sugar-bind  Putative sugar-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.4   0.4   6.9e-68   1.8e-64       2     254 ..      71     319 ..      70     320 .. 0.97

  Alignments for each domain:
  == domain 1  score: 217.4 bits;  conditional E-value: 6.9e-68
                 CCCCHHHHHHHHHHHHT-SEEEEESSTSTTCHHHHHHHHHHHHHHHHH--TTEEEEE-SSHHHHHHHHHTHH.CCHTCEEEEESBSECSSCHCGSHHHH CS
  Sugar-bind   2 elaelleleerLkekfglkeaivvpddadeedvlealgraaaqllesllkdgdvvgvgwGrtlsavaealtp.kslrdvkvvqliGglsekvsaevnev 99 
                 +++++l+le++L+++fglk a+v p+ ++ + ++++lg +aaq l+ +l++g+ ++vg+G+++++++++l+     ++v++v+l+Gg++++        
  CTQ30093.1  71 RYEGCLALESELQQRFGLKIARVLPALNT-PPMNTRLGIGAAQSLMGILQPGQLLAVGFGEATMSCLQHLSGfIGSQQVRLVTLSGGVGPY-------- 160
                 789*************************7.889***************************************9******************........ PP

                 HHHHHHHC.TSEEE--SSBSB-SSHHHHHHHHTSHHHHHHHHHHHT-SEEEEE-EEHCC..CCHHHCCTTS-HHHHHHHHHTTEEEEETTEEEETTS-B CS
  Sugar-bind 100 varlAqkl.ggeyellpaPavlssaelreallaersikevlelakkadvalvGiGsase..eaklvkrgflteeelaelreegaVGeilgrffDaeGev 195
                 ++ ++q    ++++++paP+ +ssae++e l++e+s+++v+ +a+ ad a+vGiG++++  +a+++++g+++e e+ +++++gaVG+ilg+f +a+G++
  CTQ30093.1 161 MTGIGQLDaACSVSIIPAPLRVSSAEVAEILRRESSVRDVILAATAADAAVVGIGAIDQrrDATILRSGYISEGEQLMYARKGAVGDILGYFLQADGRP 259
                 66788876599************************************************99************************************** PP

                 CC.HCHCCCBSB--HHHHTTSSEEEEE--SGGGHHHHHHHHHTTS-SEEEEEHHHHHHHH CS
  Sugar-bind 196 ve.telnerviglsledlrkipkviavAggesKaeAilaaLrgglinvLitdestAkalL 254
                 ve  e++++++g++l++l + p +++vAgge+Ka+Ai aaL g++in+L+t+e+tA+a+L
  CTQ30093.1 260 VEgLEIHRELLGVTLDELAQLPTIVGVAGGEEKAQAIYAALIGKRINGLVTEETTARAVL 319
                 **9*******************************************************99 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.6e-07    0.0004      16      46 ..      30      60 ..      25      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.6e-07
                HHTTT--HHHHHHHHTS-HHHHHHHHHHHHH CS
  Sigma70_r4 16 rfgeglTleEIgerlgiSrerVrqiekrAlr 46
                ++ +glT+ +Igerlg++r  +++++ ++++
  CTQ30093.1 30 YYHDGLTQNDIGERLGLPRLKISRLLEKGRQ 60
                6799*********************999875 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.8e-06    0.0047      15      54 ..      30      67 ..      26      71 .. 0.89
   2 ?   -3.7   0.0       4.5   1.1e+04      33      43 ..     182     192 ..     177     196 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.8e-06
                HCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 15 grrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                + ++g  lt++++ +rlgl++  +sr+l++  + G ++ +
  CTQ30093.1 30 YYHDG--LTQNDIGERLGLPRLKISRLLEKGRQSGVIRVQ 67
                67899..***********************9999999876 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.5
                 SSHHHHHHHHH CS
      MarR_2  33 lsksavsrilk 43 
                 +s + v  il+
  CTQ30093.1 182 VSSAEVAEILR 192
                 44444444444 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.3e-06    0.0059      22      53 ..      35      67 ..      16      75 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.3e-06
                HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.E CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilseLkreglis.r 53
                ltq +++++lGl r  +sr+l + ++ g+i+ +
  CTQ30093.1 35 LTQNDIGERLGLPRLKISRLLEKGRQSGVIRvQ 67
                8*****************************942 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.9e-05      0.12      16      48 .]      33      65 ..      30      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.9e-05
      HTH_24 16 prisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                 +++q+++ erlgl++  ++r l++  ++G+I+
  CTQ30093.1 33 DGLTQNDIGERLGLPRLKISRLLEKGRQSGVIR 65
                69*******************999999999886 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00061       1.6      14      39 ..      34      60 ..      13      69 .. 0.83
   2 ?   -2.0   0.1       1.9   4.9e+03      25      39 ..     181     195 ..     178     210 .. 0.57
   3 ?    1.2   0.0      0.18   4.6e+02       9      23 ..     266     280 ..     262     281 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00061
      HTH_31 14 GLsqeevAerlgvsestlsrlEq.Grr 39
                GL+q + +erlg+ + ++srl   Gr+
  CTQ30093.1 34 GLTQNDIGERLGLPRLKISRLLEkGRQ 60
                9*******************8653665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.9
      HTH_31  25 gvsestlsrlEqGrr 39 
                 +vs + +  + + + 
  CTQ30093.1 181 RVSSAEVAEILRRES 195
                 444444444444444 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.18
      HTH_31   9 lReraGLsqeevAer 23 
                  Re  G++++e+A++
  CTQ30093.1 266 HRELLGVTLDELAQL 280
                 688999999999985 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.31      17      53 ..      20      56 ..       9      64 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
                HHHHHHHHHHHHHCT--HHHHHHHHT--HHHHHHHHT CS
      HTH_37 17 aqlalaiaeliekrelsqseaaqllgiaqPkvsrllr 53
                 +l++++a+   + +l+q ++ ++lg ++ k+srll 
  CTQ30093.1 20 EELVARVAWCYYHDGLTQNDIGERLGLPRLKISRLLE 56
                57888999999***********************973 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2289.56
//
Query:       CTQ30094.1  [L=532]
Description: autoinducer AI-2 kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-50  171.1   0.0    4.8e-50  170.4   0.0    1.4  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
    6.3e-17   62.0   0.1    1.1e-16   61.2   0.1    1.4  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
  ------ inclusion threshold ------
        0.1   12.4   0.3        6.2    6.7   0.1    2.5  2  RVT_3     Reverse transcriptase-like


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.4   0.0   8.1e-54   4.8e-50       1     245 []       3     250 ..       3     250 .. 0.95

  Alignments for each domain:
  == domain 1  score: 170.4 bits;  conditional E-value: 8.1e-54
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SST..T--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE- CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspke..gwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynail 97 
                 ++l+lD Gt s++a+++d +g+ +a++qae +  s ++  g  e d+   wq  +++ir++l++a +s+ +i+ ++  + reg vl D+n++ +  +  
  CTQ30094.1   3 YLLALDAGTGSIRAVIFDLNGRQLAVGQAEWKHLSVDNvpGSMEFDLTTNWQLACQCIRQALDAARLSAADIQSVACCSMREGIVLYDRNGEAIWAC-A 100
                 789***************************9999888777*****************************************************9866.5 PP

                 TT--TTHHHHHHHHH...TTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-HHHH CS
      FGGY_N  98 wkdrrtaeiveklke...egnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnikklewdeell 193
                   d r++ +v +lke      e ++ye +g++l     + +l Wl+++ p++++k++++ +i+d+L  +L+g+ ++d +na++++++++ +++w + ll
  CTQ30094.1 101 NVDARASREVAELKEihdYRFESEVYEVSGQTLA-LSAMPRLLWLAHHRPDIYRKAATITMISDWLAAKLSGELAVDPSNAGTTGMLDLFSRDWRPALL 198
                 689999999999999764455789*******986.56899*********************************************************** PP

                 HHTT--GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 194 ailgipeelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 +++g+  ++L++++e++   g++++ +a+++Gl +g+pvv gggD+q++ lG
  CTQ30094.1 199 DMAGLRADMLSPVKETGTLLGAVTEAAAQQSGLRAGTPVVMGGGDVQLGCLG 250
                 *************************************************998 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.1   1.8e-20   1.1e-16      35     196 ..     292     456 ..     265     458 .. 0.84

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 1.8e-20
      FGGY_C  35 kpeyalegsiavagslvawlldnlglree.irdageveeslaelaaaeavadaggvvfvpaf.sglrapywdpdargtitglssstt..lahiarAale 129
                 ++   +e   +++g ++ w++d   + e+ i++   v + + +l+++++ ++ag   + p f   ++   w+++a+ +i    ++++  +a ++rA+ e
  CTQ30094.1 292 PGMAQAESISFFTGLTMRWFRDAFCAEEKlIAERLGV-DAYSLLEEMASRVPAGSHGVMPIFsDAMHFKQWYHAAPSFINLSIDPEKcnKATLFRALEE 389
                 456667777888999999*****84444404444444.77777779*******9999*****888899999999999775555555578********** PP

      FGGY_C 130 avalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAav 196
                   a   +  l ++++ sg+ +++l+  GGgsk  l+ q+l d++g+pV++p  +eatalG+Ai+A+ 
  CTQ30094.1 390 NAAIVSACNLAQISQFSGVTFESLVFAGGGSKGALWSQILSDVTGLPVRVPVVREATALGCAIAAGT 456
                 ***************9*************************************************96 PP

>> RVT_3  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.014        82      10      33 ..       9      32 ..       6      41 .. 0.85
   2 ?    6.7   0.1     0.001       6.2      16      46 ..      85     114 ..      81     117 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.014
       RVT_3 10 sgaggagvvirdsnGevllagaek 33
                 g+g++++vi d nG+ l++g++ 
  CTQ30094.1  9 AGTGSIRAVIFDLNGRQLAVGQAE 32
                6899****************9987 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.001
       RVT_3  16 gvvirdsnGevllagaeklqgkasveeAElq 46 
                 g+v+ d nGe+++a a   + +as+e+AEl+
  CTQ30094.1  85 GIVLYDRNGEAIWACANV-DARASREVAELK 114
                 89************9977.**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3872.43
//
Query:       CTQ30095.1  [L=673]
Description: 2,4-dienoyl-CoA reductase, NADH and FMN-linked [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.7e-101  338.8   0.0   4.6e-101  338.5   0.0    1.1  1  Oxidored_FMN    NADH:flavin oxidoreductase / NADH oxidase fam
    9.9e-23   80.8   0.0    2.5e-22   79.5   0.0    1.7  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    1.7e-08   34.5   1.1      5e-08   33.1   0.0    2.4  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    4.8e-07   29.3   0.4      0.032   13.5   0.0    3.5  3  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    5.7e-07   30.0   3.1    0.00053   20.5   0.1    4.2  4  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
      1e-05   24.4   0.2      1e-05   24.4   0.2    1.9  2  HI0933_like     HI0933-like protein
    9.2e-05   21.7   0.4    0.00024   20.3   0.4    1.7  1  FAD_binding_2   FAD binding domain
    0.00011   21.7   0.3     0.0002   20.9   0.3    1.3  1  FAD_oxidored    FAD dependent oxidoreductase
    0.00044   19.9  15.1      0.003   17.2   0.5    4.3  4  DAO             FAD dependent oxidoreductase
     0.0087   15.7   0.3       0.73    9.4   0.0    2.4  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
     0.0099   15.8   2.6       0.15   11.9   0.1    2.3  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
  ------ inclusion threshold ------
      0.014   14.5   2.6      0.028   13.5   0.1    2.3  2  GIDA            Glucose inhibited division protein A
      0.017   14.5   0.1        7.6    5.8   0.0    2.5  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.018   14.4   0.2       0.17   11.2   0.1    2.2  2  ThiF            ThiF family
      0.022   14.8   3.9       0.18   11.8   0.1    3.2  4  NAD_binding_9   FAD-NAD(P)-binding
      0.023   14.0   2.8        2.2    7.4   0.4    2.3  2  FAD_binding_3   FAD binding domain
      0.034   14.3   0.3        3.6    7.7   0.0    3.3  3  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
      0.078   12.0   0.2      0.078   12.0   0.2    1.5  2  Lycopene_cycl   Lycopene cyclase protein
       0.17   11.2   0.0       0.17   11.2   0.0    2.5  3  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.5   0.0  4.9e-104  4.6e-101       1     341 [.       6     331 ..       6     332 .. 0.98

  Alignments for each domain:
  == domain 1  score: 338.5 bits;  conditional E-value: 4.9e-104
                   CCCS-EEETTEEESSSEEE---.-S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EE CS
  Oxidored_FMN   1 kLFkPikignmtLknRivmapm.trlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskv 96 
                   +LF+P+++g++tLknR++m++m t l++l++g  ++ ++a++y++ra+++v+li+t+++++ p + ++ + + ++d+++++++r +t+avh++g+k+
    CTQ30095.1   6 SLFAPLELGFTTLKNRVLMGSMhTGLEELPDG--AQ-RLAAFYAERARHGVALIVTGGIAPAPSGVTMAGGAVLNDASHLAHHRHITDAVHQEGGKI 99 
                   59******************************..55.99********************************************************** PP

                   EEEEE--GGGS..SCSTCEC..SS.ESSSSSTTT-.S...CS.-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT----S CS
  Oxidored_FMN  97 vvqlwhlGreakseyladqevdspsdpvaldaqeeesaeevy.kkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksnkrtD 192
                   ++q++h+Gr++   y++     +ps   al+a+++     ++ ++el+++ei  li++f+++A++a+eAg+DgVe++g++GYL+n+Fl  ++n+r D
    CTQ30095.1 100 ALQILHTGRYS---YQPALV--APS---ALQAPIN-----RFtPHELSHDEILTLIDDFAHCAQLAREAGYDGVEVMGSEGYLINEFLAARTNQRDD 183
                   ***********...999999..555...9****77.....6669***************************************************** PP

                   TTSSSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEECE--STTS--HHHH...HHHHHHHCHCCEEEEEEETT-SS.SSSTTS-TTTTHHHCCTTHHH CS
  Oxidored_FMN 193 eygGslenRarFllevvdaVkeavgeer.vgyRlSpedvvekgldfaet...aqkivllkelekrlkdgkklalv.haaeprkrgagsvrteqeknt 284
                   ++gG++  R+rF++evv+aV++++g+++ ++yRlS+ d+v++g + ae+   a++i+++++++ ++ +g+++a++ ++a+p++rga+s++t+     
    CTQ30095.1 184 QWGGDYARRMRFAVEVVKAVRQRAGHDFiIIYRLSMLDLVNDGGTLAEVtelAKAIEAAGATIINTGIGWHEARIpTIATPVPRGAFSWVTR----- 275
                   ****************************9********************999****************************************..... PP

                   HHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCG CS
  Oxidored_FMN 285 efvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpl 341
                    ++k  ++ plit++ri+d+++a++i+a+g+ad+v+m+R+flad+++++k++ ++++
    CTQ30095.1 276 -KLKGAVSIPLITTNRINDPQVAEDILARGDADMVSMARPFLADAEFISKAQDDRAD 331
                   .****************************************************9987 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.0   2.7e-25   2.5e-22       2     260 ..     377     653 ..     376     661 .. 0.84

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 2.7e-25
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqgielllgeevvkidpgkkkvklekkkegdeekia 99 
                  +++v+G+GpAGla+a ++a+ g+ vtl+ +     +g+  ++k + g +e++e+++         ++++l+ ++v++  +  +v+      +d   +a
   CTQ30095.1 377 RLAVVGAGPAGLAFAVNAAARGHHVTLF-DALPEIGGQFNIAKQIPGKEEFHETLRY--------YRTMLDLHGVDLRLNT-RVTT-----DD--LLA 457
                  789*************************.666678999999***********96654........7888887778886666.6666.....33..69* PP

                  ESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..SEEEEES-SHHHHHHHHHHHHHT-............................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx............................. RF
  Pyr_redox_2 100 ydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp..krivvvGgGyiGvElAaalaklgk............................. 166
                  +d+ +lAtG  pr++ i+G  ++  k+   l   + l++k  p  ++++++G G iG ++A++l++ g+                             
   CTQ30095.1 458 FDETILATGIAPRLPAIDGI-DHP-KV---LSYLDVLRDK-APvgAKVAIIGCGGIGFDTAMFLSQSGAatsqdigefcrewgidtslqtagglsaeg 549
                  ********************.443.22...3333333333.333589*****************9999999999999********************* PP

                  ........E.EEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCS..HCCT-EEE CS
                  ........x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
  Pyr_redox_2 167 ........e.vtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelle..eklgleld 253
                          + v l   ++++ ++l+k  + + ++ l ++Gv++    s ++id++g  + ++ ++ + +++d vv+++G +p++el++  +++g ++ 
   CTQ30095.1 550 pqlsksprQiVMLQRKASKPGEGLGKTTGWIHRATLLARGVKMIPAVSYEKIDDEGL-HVTIGGERQLLAVDQVVICAGQEPRRELADplRAAGKTVH 646
                  *******97455556677888********************************8885.4488888889******************999888888776 PP

                  ETTEEE- CS
                  xxxxxxx RF
  Pyr_redox_2 254 erggivv 260
                    gg  v
   CTQ30095.1 647 LIGGCDV 653
                  6666655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   5.3e-11     5e-08       1      38 [.     380     417 ..     380     438 .. 0.86
   2 ?   -2.1   0.3       4.9   4.6e+03       1      20 [.     501     520 ..     501     523 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 5.3e-11
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasy 38 
                    +vGaG +Gl++A  +a +g++v+l+++ + +GG+   +
     CTQ30095.1 380 VVGAGPAGLAFAVNAAARGHHVTLFDALPEIGGQFNIA 417
                    8********************************98755 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.9
                    EE--SHHHHHHHHHHHCCTE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagf 20 
                    I+G G  G  +A +L++ g+
     CTQ30095.1 501 IIGCGGIGFDTAMFLSQSGA 520
                    8999*99********99875 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.6   0.00025      0.24       2      21 ..     380     399 ..     379     415 .. 0.85
   2 !   13.5   0.0   3.4e-05     0.032     123     189 ..     456     521 ..     412     528 .. 0.86
   3 ?   -1.0   0.0      0.89   8.4e+02     225     272 ..     589     633 ..     579     647 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagl 21 
                  ++GaGPaGla+a+++   g 
   CTQ30095.1 380 VVGAGPAGLAFAVNAAARGH 399
                  8*************999887 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.4e-05
  Pyr_redox_3 123 yeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkya..gqkvvViGgknSavDaAlelvrkgae 189
                  +  ++ i+AtG    P+++ i G + ++k+ s+ + +++ a  g kv++iG +  ++D+A+ l + ga 
   CTQ30095.1 456 LAFDETILATGI--APRLPAIDGID-HPKVLSYLDVLRDKApvGAKVAIIGCGGIGFDTAMFLSQSGAA 521
                  5556789*****..**********9.88888887766655555********************999986 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.89
  Pyr_redox_3 225 ekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdls 272
                  + +k++   ++++i+++    +v+   ++++ + d+vv++ G +p  +
   CTQ30095.1 589 G-VKMIPAVSYEKIDDEGL--HVTIGGERQLLAVDQVVICAGQEPRRE 633
                  3.88999999999998755..555555567888899999999888755 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   5.6e-07   0.00053       1      39 [.     377     415 ..     377     454 .. 0.82
   2 ?    6.4   0.1     0.014        13       1      23 [.     498     520 ..     498     524 .. 0.89
   3 ?   -1.8   0.0       5.2   4.9e+03      32      70 ..     567     605 ..     558     610 .. 0.76
   4 ?   -2.3   0.0       7.5   7.1e+03      13      28 ..     633     648 ..     633     657 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5.6e-07
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllD 39 
                 +++vvG+G  gl +A ++a+ g++Vt++++ +++  +++
  CTQ30095.1 377 RLAVVGAGPAGLAFAVNAAARGHHVTLFDALPEIGGQFN 415
                 689*******************************98887 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.014
                 EEEEECSSHHHHHHHHHHHHTTS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgk 23 
                 kv+++G G ig + A +l++ g+
  CTQ30095.1 498 KVAIIGCGGIGFDTAMFLSQSGA 520
                 79****************99875 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 5.2
                 SSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEET CS
   Pyr_redox  32 dkllrllDeeaskilqeklekngievllntkveeiegse 70 
                 +k+  +l+++++ i +  l ++g++++   + e+i+ ++
  CTQ30095.1 567 SKPGEGLGKTTGWIHRATLLARGVKMIPAVSYEKIDDEG 605
                 556677777777788888889999999999999998655 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 7.5
                 HHHHHHHHTTSEEEEE CS
   Pyr_redox  13 ElAgalaelgkkVtvv 28 
                 ElA  l++ gk V+++
  CTQ30095.1 633 ELADPLRAAGKTVHLI 648
                 7788888888888887 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.2   1.1e-08     1e-05       2      42 ..     377     417 ..     376     419 .. 0.93
   2 ?   -2.8   0.9       2.1     2e+03       2      24 ..     498     520 ..     497     523 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.1e-08
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHC CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKilis 42 
                  +++v+G+G+AGl  A++aa+rg++V+l+++ +++g  + i+
   CTQ30095.1 377 RLAVVGAGPAGLAFAVNAAARGHHVTLFDALPEIGGQFNIA 417
                  579*******************************9988775 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.1
                  SEEEE--SHHHHHHHHHHHHTT- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgk 24 
                  +v++iG G  G+ +A+ +++ g+
   CTQ30095.1 498 KVAIIGCGGIGFDTAMFLSQSGA 520
                  799*********99999998886 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.4   2.5e-07   0.00024       3      41 ..     379     417 ..     377     419 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.5e-07
                    EEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG- CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvekeqefggataws 41 
                     V+G+G AGLa A++aa +G+ v++ +  +e gg+  ++
     CTQ30095.1 379 AVVGAGPAGLAFAVNAAARGHHVTLFDALPEIGGQFNIA 417
                    7********************************987665 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.3   2.1e-07    0.0002       3      38 ..     379     414 ..     378     421 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.1e-07
  FAD_oxidored   3 vVvGGgpaGvaAAiaAaraGakvlLveergvlGGll 38 
                    VvG+gpaG+a A+ Aa +G  v L +  + +GG++
    CTQ30095.1 379 AVVGAGPAGLAFAVNAAARGHHVTLFDALPEIGGQF 414
                   7*********************************96 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.3       0.9   8.4e+02     150     163 ..     233     246 ..      36     300 .. 0.64
   2 !   17.2   0.5   3.2e-06     0.003       2      35 ..     378     412 ..     377     418 .. 0.92
   3 !    6.5   0.6    0.0055       5.2       1      23 [.     498     526 ..     498     566 .. 0.74
   4 ?    4.0   0.0     0.032        30     149     204 ..     577     630 ..     573     650 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.9
                 HHHHHHHHHTT-EE CS
         DAO 150 aalaraaealGvei 163
                   la+a+ea+G++i
  CTQ30095.1 233 TELAKAIEAAGATI 246
                 22333333333333 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 3.2e-06
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSS CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdiagsg 35 
                 ++++G+G +Gl+ A  +a+rg  Vtl+++ +++g g
  CTQ30095.1 378 LAVVGAGPAGLAFAVNAAARGhhVTLFDALPEIG-G 412
                 69******************99*******99988.6 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0055
                 EEEEECTSHHHHHHHHHHHHTT......E CS
         DAO   1 dvviiGGGiiGlstAyeLarrg......V 23 
                 +v+iiG G iG  tA++L++ g      +
  CTQ30095.1 498 KVAIIGCGGIGFDTAMFLSQSGaatsqdI 526
                 59****************99986544444 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.032
                 HHHHHHH.HHHTT-EEEESECEEEEEEEETCEEEEEEECTEEEE..EEEEEEE--GGGH CS
         DAO 149 taalara.aealGveilegtevtgleeedgkvwgverttpgend..aadavVnaaGaws 204
                 t ++ ra + a+Gv+++     +++++e g  +++     ge++  a+d+vV++aG   
  CTQ30095.1 577 TGWIHRAtLLARGVKMIPAVSYEKIDDE-GLHVTI-G---GERQllAVDQVVICAGQEP 630
                 5566666689999999999888888543.333333.2...55545699********654 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00078      0.73       2      31 ..     377     406 ..     376     419 .. 0.93
   2 ?    4.0   0.1     0.035        33       2      24 ..     498     520 ..     497     526 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00078
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDi 31 
                     +++v+G+G  Gl  a+  a++gh+v++ D 
      CTQ30095.1 377 RLAVVGAGPAGLAFAVNAAARGHHVTLFDA 406
                     789***********************9995 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.035
                     EEEEE--STTHHHHHHHHHHCTS CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeigh 24 
                     k+++iG G +G  ta+ l++ g 
      CTQ30095.1 498 KVAIIGCGGIGFDTAMFLSQSGA 520
                     89*****************9985 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   0.00016      0.15       2      32 ..     378     408 ..     377     420 .. 0.91
   2 ?    3.7   0.3     0.053        50       1      23 [.     498     520 ..     498     526 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00016
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-H CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdise 32 
                 +av+GaG  G   a  +a++g++V+l+d  +
  CTQ30095.1 378 LAVVGAGPAGLAFAVNAAARGHHVTLFDALP 408
                 69*************************9865 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.053
                 EEEEE--SCCHHHHHHHHHHTT- CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagl 23 
                 kva+iG+G +G   a+ + ++g 
  CTQ30095.1 498 KVAIIGCGGIGFDTAMFLSQSGA 520
                 79***************999997 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.9e-05     0.028       3      28 ..     379     404 ..     377     431 .. 0.85
   2 ?    0.1   0.3      0.34   3.2e+02       1      25 [.     498     522 ..     498     524 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.9e-05
                 EEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLi 28 
                  V+G+G AG++ A++aa +G++v+L+
  CTQ30095.1 379 AVVGAGPAGLAFAVNAAARGHHVTLF 404
                 7************************9 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.34
                 CEEEE-SSHHHHHHHHHHHHTT--E CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakv 25 
                 +v +iG G  G+  A+ ++++Ga +
  CTQ30095.1 498 KVAIIGCGGIGFDTAMFLSQSGAAT 522
                 699*******************987 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0081       7.6      36      70 ..     375     409 ..     367     431 .. 0.87
   2 ?    5.8   0.1    0.0083       7.9      36      60 ..     496     520 ..     487     523 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0081
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskk 70 
                    k+++++G+G  G a+a  ++a g +v+ +d  ++
    CTQ30095.1 375 PKRLAVVGAGPAGLAFAVNAAARGHHVTLFDALPE 409
                   589**************************998765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0083
                   TSEEEEES-SHHHHHHHHHHHHTT- CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgm 60 
                   g +v+iiG+G IG  +a  l++ g+
    CTQ30095.1 496 GAKVAIIGCGGIGFDTAMFLSQSGA 520
                   789**************99988776 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.37   3.5e+02      19      49 ..     376     405 ..     365     406 .. 0.85
   2 ?   11.2   0.1   0.00018      0.17      12      42 ..     490     520 ..     480     523 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.37
                 SEEEEE--SHHHHHHHHHHHHHTTTEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  19 skvllvGaGglGsellknLalsGvgkltlvD 49 
                 ++ ++vGaG  G  +++n a+ G  ++tl+D
  CTQ30095.1 376 KRLAVVGAGPAGLAFAVNAAARG-HHVTLFD 405
                 6889**************99988.4666666 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00018
                 HHHHHHTSEEEEE--SHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF  12 gqekLrdskvllvGaGglGsellknLalsGv 42 
                  +++   +kv+++G+Gg+G   ++ L  sG 
  CTQ30095.1 490 RDKAPVGAKVAIIGCGGIGFDTAMFLSQSGA 520
                 56677789****************9999995 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00019      0.18       1      39 [.     379     412 ..     379     421 .. 0.83
   2 ?   -2.3   0.0       4.1   3.9e+03     133     154 ..     445     466 ..     431     467 .. 0.73
   3 ?   -2.8   0.1       5.7   5.4e+03       1      19 [.     500     518 ..     500     525 .. 0.78
   4 ?    2.6   0.0      0.12   1.2e+02     131     155 ..     603     628 ..     591     629 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdp.sepgag 39 
                    a+vGaGp+Gla++ + +ar      +++tlfd   e+g g
     CTQ30095.1 379 AVVGAGPAGLAFAVNAAAR-----GHHVTLFDAlPEIG-G 412
                    89*************9999.....599*****944445.4 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.1
  NAD_binding_9 133 gqavlladgaslaadaVvLAlG 154
                    +   + ++++ la+d+ +LA+G
     CTQ30095.1 445 RLNTRVTTDDLLAFDETILATG 466
                    4455667777899********9 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.7
  NAD_binding_9   1 aivGaGprGlavlerLlar 19 
                    ai+G+G  G  ++  L ++
     CTQ30095.1 500 AIIGCGGIGFDTAMFLSQS 518
                    8*****9998888777665 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.12
  NAD_binding_9 131 adgqavlladgasl.aadaVvLAlGh 155
                    ++g +v+  ++++l a+d+Vv++ G+
     CTQ30095.1 603 DEGLHVTIGGERQLlAVDQVVICAGQ 628
                    344577777777755*********96 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0045       4.2       5      31 ..     379     405 ..     377     410 .. 0.85
   2 ?    7.4   0.4    0.0024       2.2       3      25 ..     498     520 ..     496     523 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0045
                    EEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlve 31 
                    ++VGaGpaGl  a   + +G  v+l +
     CTQ30095.1 379 AVVGAGPAGLAFAVNAAARGHHVTLFD 405
                    69***********99999998888876 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0024
                    EEEEE--SHHHHHHHHHHHHTTH CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGv 25 
                    +V+I+G G  G+ +a++Ls+ G 
     CTQ30095.1 498 KVAIIGCGGIGFDTAMFLSQSGA 520
                    8*******************997 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.27   2.6e+02      95     135 ..      36      74 ..      32      89 .. 0.90
   2 ?   -0.1   0.0         1   9.5e+02      76     116 ..     213     251 ..     186     257 .. 0.71
   3 ?    7.7   0.0    0.0038       3.6       2      33 ..     378     409 ..     377     438 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.27
                    HHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE- CS
  NAD_binding_2  95 edtrelakelkekglkfldaPVSGGeegAekGtLsimvGGs 135
                    + +++la+  +e+  + +   V+GG + A +G    m+GG 
     CTQ30095.1  36 DGAQRLAAFYAERARHGVALIVTGGIAPAPSGV--TMAGGA 74 
                    6689999999999999****************9..999995 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1
                    HCCC--TT-EEEE-S---HHHHHHHHHHHHHTT-EEEEEEE CS
  NAD_binding_2  76 llealkkgdilidgstsspedtrelakelkekglkfldaPV 116
                    ++ +l+  d++ dg+t   ++ +elak+++++g++++++++
     CTQ30095.1 213 IIYRLSMLDLVNDGGTL--AEVTELAKAIEAAGATIINTGI 251
                    66667777777778775..4677899999999999999887 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0038
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtke 33 
                    ++++G G  G  +a n +++g++v++++  +e
     CTQ30095.1 378 LAVVGAGPAGLAFAVNAAARGHHVTLFDALPE 409
                    79*************************97665 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   8.2e-05     0.078       2      36 ..     378     410 ..     377     415 .. 0.91
   2 ?   -4.3   0.3       7.2   6.8e+03       2      18 ..     499     515 ..     499     520 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.2e-05
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlieaspsl 36 
                    ++v+GaGpAgl+ A +   a+ g +v+l +a p++
     CTQ30095.1 378 LAVVGAGPAGLAFAVNA--AARGHHVTLFDALPEI 410
                    68*************99..999******9998876 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 7.2
  Lycopene_cycl   2 vvviGaGpAglslAarl 18 
                    v++iG+G  g   A  l
     CTQ30095.1 499 VAIIGCGGIGFDTAMFL 515
                    79*****9998877655 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.3       5.5   5.2e+03       5      38 ..      42      75 ..      39      80 .. 0.65
   2 ?   11.2   0.0   0.00018      0.17      18      63 ..     365     410 ..     353     430 .. 0.84
   3 ?    0.5   0.2      0.32   3.1e+02      29      53 ..     497     521 ..     490     524 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.5
                 HHHHCSCGCTSE.EETTCEETCB---EEEEESTSH CS
  AlaDh_PNT_C  5 aakalekffggk.gtlaGgvpgvepakvlviGgGv 38
                 aa++ e++  g   ++ Gg+   +p+ v+  Gg v
   CTQ30095.1 42 AAFYAERARHGVaLIVTGGIA-PAPSGVTMAGGAV 75
                 677777776664156677777.5666677777654 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00018
                  ETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHH CS
  AlaDh_PNT_C  18 tlaGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlDvrpar 63 
                  tl+  +p  +p +  v+G+G aGl+ + +a++ g +Vt++D  p+ 
   CTQ30095.1 365 TLMPVLPANAPKRLAVVGAGPAGLAFAVNAAARGHHVTLFDALPEI 410
                  6677777778999****************************87765 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.32
                  -EEEEESTSHHHHHHHHHHHHTT-E CS
  AlaDh_PNT_C  29 akvlviGgGvaGlqAiatakglgak 53 
                  akv +iG G  G   +   ++ ga 
   CTQ30095.1 497 AKVAIIGCGGIGFDTAMFLSQSGAA 521
                  9***********9999888777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 4682.55
//
Query:       CTQ30096.1  [L=376]
Description: putative methyltransferase small domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-57  193.6   0.0    1.2e-55  187.7   0.0    2.1  2  MTS              Methyltransferase small domain
    8.3e-09   36.0   0.0    2.3e-08   34.6   0.0    1.8  1  Methyltransf_25  Methyltransferase domain
    3.1e-07   30.3   0.0    9.6e-07   28.7   0.0    1.7  2  Methyltransf_31  Methyltransferase domain
    1.6e-06   28.8   0.0    5.9e-06   26.9   0.0    2.0  2  Methyltransf_12  Methyltransferase domain
    2.4e-05   23.9   0.0    5.1e-05   22.8   0.0    1.5  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00018   21.3   0.0     0.0068   16.2   0.0    2.3  2  Methyltransf_16  Lysine methyltransferase
    0.00036   20.2   0.0    0.00064   19.4   0.0    1.4  1  Cons_hypoth95    Conserved hypothetical protein 95
     0.0018   18.9   0.0      0.005   17.5   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
     0.0028   17.6   0.0     0.0056   16.6   0.0    1.5  1  Methyltransf_18  Methyltransferase domain
  ------ inclusion threshold ------
      0.017   14.5   0.0      0.026   13.8   0.0    1.3  1  Methyltransf_10  RNA methyltransferase


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.019        34      23      94 ..      35     102 ..      27     130 .. 0.78
   2 !  187.7   0.0   6.6e-59   1.2e-55       2     169 .]     197     368 ..     196     368 .. 0.99

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.019
                 HHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTST CS
         MTS  23 LletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeve 94 
                 Ll+++++  +g  l +  G+G+l++ala+++p      ++ ++ +  ++++nl+ n+++  +v+ +d l+ ++
  CTQ30096.1  35 LLQQVND-VDGLTLIFNDGFGALACALAERNPV----SINDSFISELATRHNLRMNGIDeESVRFQDSLSPLP 102
                 5555555.5555666778*************98....466677777778999999999977788888887776 PP

  == domain 2  score: 187.7 bits;  conditional E-value: 6.6e-59
                 EEEEEETTSTTTTS--HHHHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC....EEEEE-STTTTSTTS CS
         MTS   2 ltlktlpgvFskdklDkGsklLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle....vevvasdvleeveek 96 
                 +t++++++vF++ +lD+G++++l++lp++l+g+++DlGcG+Gv+g+++++++p+a+v ++d++++A++s++ n+e+n  +    +e++ ++ l+ +e++
  CTQ30096.1 197 WTIHNHANVFARSGLDIGARFFLQHLPSDLEGEIADLGCGNGVIGLQALAQNPNASVMFTDESHMAVASSRLNVERNLPDdiarCEFMVNNSLSGIEPD 295
                 689**************************************************************************9999999*************** PP

                 -EEEEEE---STTTCHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS--EEEEEESSEEEEE CS
         MTS  97 kfdlivsNPPfhagkatelavaeeliaeAkeaLkegGeLliVanrklgyeslleelfgnvevvaktkkfkvlk 169
                 +f +i++NPPfh+++a+++++a++++++A++ Lk gGeL++V nr+l+y ++l+++fgn++++a+++kf++lk
  CTQ30096.1 296 RFTAILCNPPFHQQHAITDHIAWQMFNDARRSLKYGGELYVVGNRHLDYFRKLKRAFGNCTTIATNNKFVILK 368
                 ***********************************************************************96 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   1.3e-11   2.3e-08       1      97 []     230     332 ..     230     332 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 1.3e-11
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT....TEEEEESBCCGBSSSTTTEEEEEEEST.GG..G.SSHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl....nvefvqgdaedlpfedgsfDlvvssga.lh..h.lsdedlekal 86 
                      + dlGcG+G + l+++++ ++a+v+ +D s+ +++  r ++e++ +    ++ef++ +  +  ++d +f +++++   +h  h ++d+ + +++
       CTQ30096.1 230 IADLGCGNGVIGLQALAQNPNASVMFTDESHMAVASSRLNVERNLPddiaRCEFMVNNSLSGIEPD-RFTAILCN-PpFHqqHaITDHIAWQMF 321
                      78*******988777777579*****************99988655777899*9999987765555.9******4.447755459999999*** PP

                      HHHHHHEEEEE CS
  Methyltransf_25  87 keiarvLkpgG 97 
                      + ++r Lk gG
       CTQ30096.1 322 NDARRSLKYGG 332
                      *********99 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.4   2.6e+03      85     110 ..     114     139 ..      78     168 .. 0.73
   2 !   28.7   0.0   5.3e-10   9.6e-07       6     111 ..     229     338 ..     225     366 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.4
  Methyltransf_31  85 naladpdkileeiervlkpggillie 110
                        la +++ l+ + +v++p+++++++
       CTQ30096.1 114 KQLALLEQQLRALREVVTPETRIIAA 139
                      55666677777888888888888765 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 5.3e-10
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld...nveFeqgdiee.leklledekfDlilsnevl...naladpdk 92 
                      ++ DlGCG+G +++++    +p+a v+  D s  a+ ++r n +++  d   ++eF + +  + +e    +++f  il+n ++   +a++d  +
       CTQ30096.1 229 EIADLGCGNGVIGLQAL-AQNPNASVMFTDESHMAVASSRLNVERNLPDdiaRCEFMVNNSLSgIE----PDRFTAILCNPPFhqqHAITDHIA 317
                      689**************.88*************************999977799999999999888....69********99988877777664 PP

  Methyltransf_31  93 ..ileeiervlkpggillied 111
                         ++ + r lk gg+l +  
       CTQ30096.1 318 wqMFNDARRSLKYGGELYVVG 338
                      225669999999999998765 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.3   5.9e+03      67      97 ..     104     134 ..      68     136 .. 0.62
   2 !   26.9   0.0   3.3e-09   5.9e-06       2      99 .]     232     334 ..     231     334 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.3
  Methyltransf_12  67 fDlvvasnvlhhlkdirevldnirklLkpgG 97 
                        + v++ v   l+ +++ l+ +r++++p+ 
       CTQ30096.1 104 APALVLIKVPKQLALLEQQLRALREVVTPET 134
                      4455555666666667788888888888876 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 3.3e-09
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl....kdir.evldnir 90 
                      ++GcG+G +    l+++p++++ ++D s  a++  +    ++ +++ +++e+ ++++l+  +++ f +++++  +h      ++i+ ++++ +r
       CTQ30096.1 232 DLGCGNGVIGLQALAQNPNASVMFTDESHMAVASSRLNVERNLPDDIARCEFMVNNSLSGIEPDRFTAILCNPPFHQQhaitDHIAwQMFNDAR 325
                      89**********************************************************999*********66665555898888999***** PP

  Methyltransf_12  91 klLkpgGrl 99 
                      + Lk gG l
       CTQ30096.1 326 RSLKYGGEL 334
                      ****99976 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.4     6e+03     199     213 ..      77      91 ..      67     100 .. 0.79
   2 !   22.8   0.0   2.8e-08   5.1e-05     163     233 ..     228     303 ..     217     343 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.4
        PrmA 199 vakeNaelNkveakl 213
                 ++++N+++N+++++ 
  CTQ30096.1  77 ATRHNLRMNGIDEES 91 
                 689999999999854 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 2.8e-08
        PrmA 163 eevlDvGtGSGiLaiaaakLg.akkvvavDiDevAvkvakeNaelN...kvea.klevalseellkeekadvivaN 233
                  e+ D+G+G G++ + a+  +  ++v+ +D  ++Av +++ N+e+N   ++++ +++v++s + ++  ++  i++N
  CTQ30096.1 228 GEIADLGCGNGVIGLQALAQNpNASVMFTDESHMAVASSRLNVERNlpdDIARcEFMVNNSLSGIEPDRFTAILCN 303
                 4799***********9877662578999******************766566667777777777777889999998 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.061   1.1e+02     137     165 ..     120     148 ..     112     158 .. 0.74
   2 !   16.2   0.0   3.8e-06    0.0068      49      92 ..     229     273 ..     216     289 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.061
  Methyltransf_16 137 elLvkvLkellkkeskvlvaykkrreaek 165
                      e+ ++ L+e++++e+ ++ a k r  +++
       CTQ30096.1 120 EQQLRALREVVTPETRIIAAAKARDVHNS 148
                      4556789999**************55544 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 3.8e-06
  Methyltransf_16  49 svlELGsGtGlvGlavaellpeakviltDlee.llellkknieln 92 
                      ++ +LG G G++Gl + ++ p+a+v+ tD ++ ++   + n+e n
       CTQ30096.1 229 EIADLGCGNGVIGLQALAQNPNASVMFTDESHmAVASSRLNVERN 273
                      6789**********998889*********9983445556666663 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.6e-07   0.00064      45     132 ..     230     315 ..     217     340 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.6e-07
                    EEETT-TTSHHHHHHHHTT-S.EEEEEES-HHHHHHHHHHHCCCT--T..TTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHH CS
  Cons_hypoth95  45 vLDlfaGsGalglEAlSRgak.kavlvekdkeavkilkenleelklee..etaelkedaleallklakkkeefdivflDPPyakellieev 132
                    + Dl +G+G++gl Al  + + ++++ ++++ av+  + n+e+   ++  +++ +++++l+ +     +  +f  +  +PP++++++i + 
     CTQ30096.1 230 IADLGCGNGVIGLQALAQNPNaSVMFTDESHMAVASSRLNVERNLPDDiaRCEFMVNNSLSGI-----EPDRFTAILCNPPFHQQHAITDH 315
                    77999************9965267889**************9876555445555555555554.....4458*************987655 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.8e-06     0.005       2      96 .]     232     336 ..     231     336 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.8e-06
                      EET-TTSH.HHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-....EEEETTEECCCTSS-TT-EEEEEEES-CCC-.....CCHHHHHHHH CS
  Methyltransf_11   2 dvGcGtGr.laealakrg.arvvgvDlskemlklakekaseegl....kvefvvadaeklpfednsfDlvvssevlhhv.....edpekalkei 84 
                      d+GcG+G   ++ala++  a+v+ +D s+ +++ ++ +++++ +    ++ef+v +  +  +e + f +++++  +h       +   + ++ +
       CTQ30096.1 232 DLGCGNGViGLQALAQNPnASVMFTDESHMAVASSRLNVERNLPddiaRCEFMVNNSLS-GIEPDRFTAILCNPPFHQQhaitdHIAWQMFNDA 324
                      9****88615777776669*******999999999888888777888888888887776.89999*********99999777766889****** PP

                      HHHEEEEEEEEE CS
  Methyltransf_11  85 aRvLkpgGllvi 96 
                      +R Lk gG l++
       CTQ30096.1 325 RRSLKYGGELYV 336
                      ********9975 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.1e-06    0.0056      17      86 ..     229     300 ..     220     303 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.1e-06
  Methyltransf_18  17 rvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagled..kievrlsdGleklkeeevdtv 86 
                       +aD G+  g++ + ++ ++   +v+++D ++ ++++++ n+e++  +d  ++e+++++ l+ ++++ ++++
       CTQ30096.1 229 EIADLGCGNGVIGLQALAQNPNASVMFTDESHMAVASSRLNVERNLPDDiaRCEFMVNNSLSGIEPDRFTAI 300
                      79*****************************************97665555889999999999998876555 PP

>> Methyltransf_10  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.5e-05     0.026     131     192 ..     255     311 ..     222     333 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
                      EEES-HHHHHHHHHHHHHT.T-TTTEEEEE--TT-SCCHHSSTTSS.-EEEEEE-S---SS-- CS
  Methyltransf_10 131 gsevddvslasakaivesnsklsdaiklrkqkekkaifdglieene.rydvtlCnPPfhasla 192
                       ++ +++++as++++ve n  l d i         ++ ++l + +  r+++ lCnPPfh++ a
       CTQ30096.1 255 FTDESHMAVASSRLNVERN--LPDDIARCE----FMVNNSLSGIEPdRFTAILCNPPFHQQHA 311
                      5677788888888888888..777764332....3344555554433************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2952.14
//
Query:       CTQ30097.1  [L=235]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-17   62.8   0.0    4.3e-17   62.3   0.0    1.2  1  B3_4      B3/4 domain


Domain annotation for each model (and alignments):
>> B3_4  B3/4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   2.4e-21   4.3e-17       2     125 ..      63     191 ..      62     208 .. 0.92

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 2.4e-21
                 SSEEEEEEEES--.-----HHHHHHHHHTT---.--HHHHHHHHHHHHHT--EEEEEGGGTBTEEEEEE--TTEEEEBTTS-EEEE-T...TSEEEETE CS
        B3_4   2 cpryaarvlrgvkktapspewlqrrLrragirp.innvVDitNyvmlelgqPlhafDldkiqgdivvrlakegeklvtldgkerelde...edlviads 96 
                 +++++ +++ + k+t +s ++l++r+ + g +p i++vVDi+N++++++++P++  +l+   g+ +++ a+++e + tl+  e  +++   +++++ d+
  CTQ30097.1  63 WDEAFSAFGAKAKRTPCSAQALRKRVLKEGSLPaIDPVVDIYNAISIRYAVPVGGENLAAYRGEPRLAIARGDEPFDTLKSAEPVVEYpepGEVIWRDD 161
                 88999**************************************************************************988776654455******** PP

                 EEEE.EETTTEEBTTTB--TT--EEEEEEE CS
        B3_4  97 ekpv.slagvmggeeskvsedTknvfleaa 125
                  ++  + +++++g +++++   +++++  +
  CTQ30097.1 162 IGVTcRRWNWRQGVRTRLDSGAQTMWFILE 191
                 **999**************99888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1939.81
//
Query:       CTQ30098.1  [L=200]
Description: putative regulator, helix-turn-helix motif [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-12   45.5   0.1    7.4e-12   44.8   0.1    1.3  1  Cupin_2       Cupin domain
      4e-11   42.8   0.2    7.4e-11   41.9   0.2    1.5  1  HTH_3         Helix-turn-helix
    1.1e-07   32.1   0.0    2.3e-07   31.0   0.0    1.5  1  HTH_31        Helix-turn-helix domain
    1.8e-07   31.1   0.0    2.9e-07   30.4   0.0    1.4  1  HTH_19        Helix-turn-helix domain
      7e-06   26.4   0.1    1.4e-05   25.4   0.1    1.5  1  HTH_26        Cro/C1-type HTH DNA-binding domain
    0.00056   19.7   0.1     0.0012   18.6   0.1    1.5  1  HTH_25        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.092   12.7   0.0       0.14   12.0   0.0    1.2  1  AraC_binding  AraC-like ligand binding domain
        0.1   12.7   0.2       0.19   11.9   0.2    1.4  1  FeoC          FeoC like transcriptional regulator


Domain annotation for each model (and alignments):
>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.1   3.3e-15   7.4e-12       2      69 ..     125     193 ..     124     195 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 3.3e-15
                 EEEEETTEEEEEECSSSEE.EEEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEEEE-SSS-EEEEE CS
     Cupin_2   2 lvelppGesapshrHpged.effyVleGegeltvdgeeveleaGdsvyfpagtpHrfrNtgdeparllv 69 
                 ++e++pGe + s  Hp ++ e+++V  G ++lt+++   ++ aG+s++  +  +H++rN+g++p+++++
  CTQ30098.1 125 RWEMQPGEAFASPGHPATTfELLHVEAGALTLTLGETCRTVAAGESAVARTEIEHGYRNEGTAPLVFTM 193
                 799***************************************************************976 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.2   3.3e-14   7.4e-11       1      54 [.      26      79 ..      26      80 .. 0.97

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 3.3e-14
                HHHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHHHHHHHTSEHHH CS
       HTH_3  1 lkelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkklakaLgvslde 54
                lk++Rk++++s+ eL++++ +s+  +  +E+  +nPs+ +l kla aLgvs ++
  CTQ30098.1 26 LKAYRKAKKMSLDELSRRASISKGMLVEMEKEAANPSIAILCKLAAALGVSVAD 79
                89*************************************************986 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0     1e-10   2.3e-07       3      60 ..      23      79 ..      21      82 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1e-10
      HTH_31  3 GalLralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavlealaralgldpae 60
                + +L+a+R++  +s++e+ +r+ +s+  l  +E  +  +ps a l +la alg+++a+
  CTQ30098.1 23 ATRLKAYRKAKKMSLDELSRRASISKGMLVEMEKEAA-NPSIAILCKLAAALGVSVAD 79
                789**********************************.6****************986 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   1.3e-10   2.9e-07       3      59 ..      25      80 ..      23      86 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.3e-10
      HTH_19  3 rLkeaReelgltqeelaerlgisrskisaiEngkkdvpsaelllkiaealgidleyl 59
                rLk++R+ ++++++el++r++is++++ + E++   +ps+  l k+a alg+++  +
  CTQ30098.1 25 RLKAYRKAKKMSLDELSRRASISKGMLVEMEKEAA-NPSIAILCKLAAALGVSVADI 80
                9********************************99.****************98655 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   6.3e-09   1.4e-05       1      60 [.      25      83 ..      25      86 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 6.3e-09
      HTH_26  1 kLrelmadrgitkseLargtgisaatlsrlvkgkpervsldtLdkiCdaLgctpgDLley 60
                +L+   ++++++  eL+r++ is++ l  + k+   ++s+  L k+++aLg++++D++  
  CTQ30098.1 25 RLKAYRKAKKMSLDELSRRASISKGMLVEMEKEA-ANPSIAILCKLAAALGVSVADIVNV 83
                67788899************************96.7*********************876 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   5.6e-07    0.0012       1      33 [.      25      57 ..      25      62 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 5.6e-07
                HHHHHHHTTT--HHHHHHHSS--HHHHHHHHCT CS
      HTH_25  1 rLraaRearglsleevaketkIrkdylealEed 33
                rL+a R+a+++sl+e++++  I+k +l ++E++
  CTQ30098.1 25 RLKAYRKAKKMSLDELSRRASISKGMLVEMEKE 57
                79*****************************97 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.4e-05      0.14      12      73 ..     130     193 ..     127     197 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.4e-05
                   TT-SE.EE.ETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEE CS
  AraC_binding  12 pdhsf.pp.hvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgweyrw 73 
                   p+++f +p h   ++++  v++G+ +l+l++    + +G+    + +  H y+ ++ +++ +++
    CTQ30098.1 130 PGEAFaSPgHPATTFELLHVEAGALTLTLGETCRTVAAGESAVARTEIEHGYRNEGTAPLVFTM 193
                   5666743435556******************************************999988776 PP

>> FeoC  FeoC like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   8.3e-05      0.19       3      34 ..      24      54 ..      22      55 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.3e-05
        FeoC  3 telkeyleergrvslkeLsrhfkaspealeam 34
                t lk+y ++ ++ sl+eLsr+ ++s+ +l  m
  CTQ30098.1 24 TRLKAY-RKAKKMSLDELSRRASISKGMLVEM 54
                679***.*******************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1641.86
//
Query:       CTQ30099.1  [L=166]
Description: putative metal dependent hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-11   43.4   0.1    3.8e-11   43.4   0.1    1.2  1  DUF45          Protein of unknown function DUF45
    0.00022   21.4   3.9    0.00031   20.9   3.0    1.5  1  WLM            WLM domain
  ------ inclusion threshold ------
      0.022   14.0   0.2      0.032   13.4   0.2    1.3  1  Peptidase_M56  BlaR1 peptidase M56
      0.024   14.5   0.2      0.036   13.9   0.2    1.4  1  SprT-like      SprT-like family
      0.088   13.1   0.0       0.18   12.0   0.0    1.5  1  LPD14          Large polyvalent protein-associated domain 14


Domain annotation for each model (and alignments):
>> DUF45  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.1   1.1e-14   3.8e-11     145     200 ..      94     149 ..      19     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 1.1e-14
       DUF45 145 scsskgkirlnwrLvkappevidYVvvHElaHlleknHskrFwalvekllPdwkea 200
                   ++k +ir  +    ap+ +++ +vvHElaHl+ek+H+k+F++l+ ++ P++ ++
  CTQ30099.1  94 KLKAKAEIRVATVFRDAPEAFLRMIVVHELAHLKEKDHNKAFYQLCCHMEPQYHQL 149
                 5577888888888889************************************9876 PP

>> WLM  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   3.0   8.7e-08   0.00031      85     119 ..     117     151 ..     110     155 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 8.7e-08
         WLM  85 gtllHELaHnvygpHdakFyallkeLekeveelka 119
                  + +HELaH +  +H++ Fy+l+ ++e ++ +l+ 
  CTQ30099.1 117 MIVVHELAHLKEKDHNKAFYQLCCHMEPQYHQLEF 151
                 5689************************9999875 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   8.8e-06     0.032     193     212 ..     112     131 ..      97     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.8e-06
  Peptidase_M56 193 deeleyillHElaHlkrkDl 212
                    ++ l +i++HElaHlk+kD+
     CTQ30099.1 112 EAFLRMIVVHELAHLKEKDH 131
                    55678**************8 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2     1e-05     0.036      42      75 ..      94     126 ..      44     154 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
   SprT-like  42 tvrhhasIeLseklldsrsedrllntLaHElcHl 75 
                 + + +a+I+ ++   d  +e +l+ +++HEl+Hl
  CTQ30099.1  94 KLKAKAEIRVATVFRDA-PEAFLRMIVVHELAHL 126
                 467789****9999888.***************8 PP

>> LPD14  Large polyvalent protein-associated domain 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.2e-05      0.18      24      77 ..      16      70 ..       6      94 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.2e-05
       LPD14 24 skvldklgaerlggvlsratgkalslikdksiikqltdianrtgv.ngyvgEvlE 77
                ++v++ +   rlg vl+++ ++  ++  dk   ++++d+ nr +  + +++ v+ 
  CTQ30099.1 16 AQVTTLIEQGRLGEVLQKRYPQGHDVNSDKALYQYTQDLKNRFLRgAAPINKVMY 70
                6788889999***************99***************7532556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1257.38
//
Query:       CTQ30100.1  [L=329]
Description: putative NAD(P)-binding dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-28   99.2   0.1    4.1e-28   98.6   0.1    1.3  1  GFO_IDH_MocA   Oxidoreductase family, NAD-binding Rossmann fo
     0.0035   18.0   0.1     0.0059   17.2   0.1    1.3  1  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.1   4.6e-32   4.1e-28       1     117 [.       2     118 ..       2     121 .. 0.96

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 4.6e-32
                   EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE.EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS- CS
  GFO_IDH_MocA   1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve.aysdleelladpeidavivatpngtheelakaaleagkhvllEKPla 96 
                   +r+a++G+ +i+++++ + +e+  +++++a+++++ e+a+a+a+ + ve  +++l+el+++p++dav++a+pn++h+  ++ +l ++khv++EKPla
    CTQ30100.1   2 IRFAVVGTNWITKQFVDAAHET-GKYKLTAIYSRSLEQAQAFAKDYPVEhLFTSLDELAQSPDVDAVYIASPNSLHFPQTRLFLSHKKHVICEKPLA 97 
                   699*************777777.**************************9*********************************************** PP

                   SSHHHHHHHHHHHHHHTS-EE CS
  GFO_IDH_MocA  97 ttveeakelvelaekkgklvs 117
                    +++e+++ ++la++++++++
    CTQ30100.1  98 SNLQEVEAAIALAKENNVVLF 118
                   *****************9886 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   6.6e-07    0.0059      10     114 ..      13     116 ..       6     119 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.6e-07
                    HHHHHH---S.SEEEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHT.THHHHHHTTEEEE-S--CGGG-HHHHHHH CS
  NAD_binding_3  10 leqlkrqqse.ielelvavadrdsllskdrkallasealtldlddliahldpdvvVEcasseavae.lvlkaLkagkdvvtankgaladealyeeL 103
                    ++q+ + + e  +++l a++ r+ + +++ +++ + e l ++ld+l++ +d+d  V  as+++++  +   +L+++k+v+   k + ++++  e+ 
     CTQ30100.1  13 TKQFVDAAHEtGKYKLTAIYSRSLEQAQAFAKDYPVEHLFTSLDELAQSPDVDA-VYIASPNSLHFpQTRLFLSHKKHVIC-EKPLASNLQEVEAA 106
                    455555555559***********77777799*****************666664.6789999999735566999*999875.55555568999999 PP

                    TSSSTTS--.E CS
  NAD_binding_3 104 reaaeangaki 114
                    +++a++n++ +
     CTQ30100.1 107 IALAKENNV-V 116
                    999999887.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2670.23
//
Query:       CTQ30101.1  [L=323]
Description: conserved hypothetical protein; putative inner membrane protein, part of terminus [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-56  189.8  13.2    3.3e-56  189.8  13.2    1.9  2  TerC      Integral membrane protein TerC family
  ------ inclusion threshold ------
      0.048   14.0   0.8        1.2    9.5   0.1    2.6  2  MLANA     Protein melan-A
       0.76    8.8  19.2       0.64    9.0   3.5    2.2  2  PHO4      Phosphate transporter family


Domain annotation for each model (and alignments):
>> TerC  Integral membrane protein TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.24   1.5e+03     139     178 ..      14      54 ..       5      57 .. 0.51
   2 !  189.8  13.2   5.5e-60   3.3e-56       1     179 [.      80     282 ..      80     284 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.24
        TerC 139 ilsilvlrflakllakllerfp.tlkylalalllligvklv 178
                 ++ + ++ ++  ll     +++ t+k +a + +l++ ++l+
  CTQ30101.1  14 AVVVAIMLAIDLLLQGRRGSHSmTMKQAAGWSILWVTLSLL 54 
                 44444444444444444444331456666666777766666 PP

  == domain 2  score: 189.8 bits;  conditional E-value: 5.5e-60
        TerC   1 ltlvlleivLsiDNlvviallvkk..lpeeqqkkalllGilgAlvlRillillavallelfdlilligglfLlytavkellekr....le.nklvkeek 92 
                 lt++l+e++L++DN++v+++l+++  +p++ q+++l++G+lgA+vlR ++i+++++l+++fd++l+++g+fLl+t+vk+ l+k+    +  ++lv++ +
  CTQ30101.1  80 LTGYLIEKALAVDNVFVWLMLFSYfaVPPALQRRVLVFGVLGAIVLRTIMIFAGSWLISQFDWLLYVFGAFLLFTGVKMALAKEddsgIGdKPLVRWIR 178
                 589******************************************************************************99999*944589999999 PP

        TerC  93 kkkkktkst.................llavviqielaDlvfslDSvlaavaitsdlfivitavilsilvlrflakllakllerfptlkylalallllig 174
                 ++ + t+++                 ll+v+i++el+D++f++DS++a++a+t+d+fiv+t+++++il+lr++++lla + erf++lky++ ++l++ig
  CTQ30101.1 179 SHLRMTDKIeserfftrkngvlfatpLLLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLSVILVFIG 277
                 9999999999999************************************************************************************** PP

        TerC 175 vklvl 179
                 vk+++
  CTQ30101.1 278 VKMLI 282
                 ***87 PP

>> MLANA  Protein melan-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00019       1.2      15      49 ..      31      65 ..      13      87 .. 0.84
   2 ?    2.5   0.1     0.029   1.7e+02      25      53 ..     291     319 ..     272     323 .] 0.83

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00019
       MLANA 15 kgrsyitaeeaaGigllvvvLaillllgCwyykrr 49
                +g+  +t+ +aaG ++l v L++l+  + w+y  +
  CTQ30101.1 31 RGSHSMTMKQAAGWSILWVTLSLLFNAAFWWYLVQ 65
                5667899******************9999988544 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.029
       MLANA  25 aaGigllvvvLaillllgCwyykrrsGYk 53 
                 a+ +g++  +La+ ll+  w  +++   +
  CTQ30101.1 291 AISLGVVGGILAVTLLINAWVNRQHDKQR 319
                 677788888***********999876655 PP

>> PHO4  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   9.4     0.003        18      15     143 ..      32     159 ..      31     246 .. 0.62
   2 ?    9.0   3.5   0.00011      0.64      60     105 ..     263     308 ..     228     318 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.003
        PHO4  15 gskaltlrqAvilaaifeflGavl...lGaeVaetirkgivdvelfdpselm......lgmlaallgaavwlllatvlglPvS.tthslvGaliGaala 103
                 gs+++t++qA+ ++ ++ +l  ++   + +  ++t ++ ++     dp+ l+      +    a+   +vwl+l +++ +P   +   lv +++Ga + 
  CTQ30101.1  32 GSHSMTMKQAAGWSILWVTLSLLFnaaFWWYLVQTQGRAVA-----DPQALAfltgylIEKALAVDNVFVWLMLFSYFAVPPAlQRRVLVFGVLGAIVL 125
                 799******************97733322556677777776.....45555544553133344555789***********977356789******9887 PP

        PHO4 104 aeggeavkwkklvkivlswvls...Pllggiiaallfllvkrl 143
                           +++  + sw++s    ll ++ a+llf+ vk++
  CTQ30101.1 126 ---------RTIMIFAGSWLISqfdWLLYVFGAFLLFTGVKMA 159
                 .........3578888999999332345555566666655544 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00011
        PHO4  60 selmlgmlaallgaavwlllatvlglPvStthslvGaliGaalaae 105
                 s l +g+ ++l+  +v +l+  ++++Pv  +  +vG++++++l ++
  CTQ30101.1 263 SMLKYGLSVILVFIGVKMLIVDFYHIPVAISLGVVGGILAVTLLIN 308
                 355599***********************************99864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2545.92
//
Query:       CTQ30102.1  [L=415]
Description: sodium:serine/threonine symporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-63  214.0  36.0      4e-63  213.8  36.0    1.0  1  SDF       Sodium:dicarboxylate symporter family


Domain annotation for each model (and alignments):
>> SDF  Sodium:dicarboxylate symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.8  36.0   2.2e-67     4e-63       1     385 [.      19     398 ..      19     403 .. 0.92

  Alignments for each domain:
  == domain 1  score: 213.8 bits;  conditional E-value: 2.2e-67
         SDF   1 LllqiliglvlGlviGllelvkelaalisplgdlfinllkmlivPlvfasiisgiaslgdakklgklglktllyfllttliAaiiglilalllkpgsel 99 
                 L+ qiliglvlG+++ l  ++k +a  + +lg+lf+ +lk +   lv++ ++ +ia+ +     +k +++ +l+++l  +++a+++ +l  +l p  +l
  CTQ30102.1  19 LVKQILIGLVLGVLLAL--VSKPAAIAVGLLGTLFVGALKAVAPVLVLMLVMASIANHQ---HGQKTSIRPILFLYLLGTFSAALTAVLFSFLFPS-TL 111
                 789**************..*********************9888889999999999984...5556666666666666666666666666666666.78 PP

         SDF 100 aleassakeaekketdslldlilslipsnifealaegnvlavivfailfGialaalgekgepllkffeslnevvmkvvkivmklaPigvfaliaslvas 198
                  l++++ + ++ +   ++l  +l+ + sn+++al++ n ++++v a+ +G+al      ++++++++++++ +v+ +vk+v+++aP+g+f+l+ s++a+
  CTQ30102.1 112 HLTTAADSITPPSGIVEVLRGLLMSMVSNPIDALLNANYIGILVWAVGLGFALRHG---NDTTKNLINDVSHAVTFIVKVVIRFAPLGIFGLVSSTLAT 207
                 899999999999999999998888888**************************998...6889************************************ PP

         SDF 199 kglgalsslakflltvylglaihllivlpllllvltkknplkf.lkkilpalltAfsTaSSaAtLPvtlecaeknlgvsesiasfvlPlGatinmdGta 296
                 +g+++l  +a++ll+++ ++++++l++ pll+++  ++np+ + l  +++  + Af T+SSaA +Pv++  +ek l+++++++s+ +PlGatinm G+a
  CTQ30102.1 208 TGFETLWGYAQLLLVLVGCMLLVALVINPLLVFWKIRRNPYPLvLTCLRESGVYAFFTRSSAANIPVNMALCEK-LNLDRDTYSVSIPLGATINMAGAA 305
                 ******************************************9667778889**********************.9*********************** PP

         SDF 297 lyeavaaifiaqlfgvelslgqllllvlvatlasiGaagvPgaglvalllvlsalglp....vegialilaidrllDmfrTavNvtGdavaal 385
                 ++++v+++ ++++++++++l + lll +va l + Ga+gv+g++l+++ l ++++g+p    ++++a+ + i +l+D+++Ta+N + da++++
  CTQ30102.1 306 ITITVLTLAAVHTLNIPVDLPTALLLSVVASLCACGASGVAGGSLLLIPLACNMFGIPndvaMQVVAVGFIIGVLQDSCETALNSSTDALFTA 398
                 **********************************************************665555699999999***************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       977  (0.0544927); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3107.69
//
Query:       CTQ30103.1  [L=184]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-56  190.0  14.1    2.7e-56  189.8  14.1    1.0  1  Imp-YgjV   Bacterial inner membrane protein
  ------ inclusion threshold ------
        5.3    6.6   7.5         11    5.6   4.4    2.1  2  CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like


Domain annotation for each model (and alignments):
>> Imp-YgjV  Bacterial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.8  14.1     3e-60   2.7e-56       1     159 []       5     163 ..       5     163 .. 0.99

  Alignments for each domain:
  == domain 1  score: 189.8 bits;  conditional E-value: 3e-60
    Imp-YgjV   1 llaQiigllalllgilsfqqkddrrllllqlvsnllfalhfalLgaytaalsnllsavRtllslktrkkkvmllfilltlvlglltwqglisllpiaas 99 
                 +laQ +g++a+l+gi++f ++d+rr++l+++v+++++++hf+l+ga  a++s+ l+a+Rt++sl+tr+ +vm++filltl+lgl + q+ ++llpi+++
  CTQ30103.1   5 WLAQGVGVIAFLIGITTFINRDERRFRLQLAVYSAIIGVHFFLMGAGPAGMSAGLNALRTVISLRTRSLWVMTVFILLTLILGLGKLQHAMELLPIIGT 103
                 79************************************************************************************************* PP

    Imp-YgjV 100 llatialfslngikmRllflvssllWlvynilvgsigglllevlflisnlitiyRlrkkk 159
                 +++t+alf+++g+++R+++++s+++W+++n+++gsigg+l+e +fli+n ++i+R+r+++
  CTQ30103.1 104 VASTWALFRCKGLTVRCVMWCSTACWVTHNLWLGSIGGTLIEGSFLIVNGLNIIRFRRMQ 163
                 ********************************************************9975 PP

>> CPP1-like  Protein CHAPERONE-LIKE PROTEIN OF POR1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.014   1.2e+02     100     133 ..      10      46 ..       4      67 .. 0.66
   2 ?    5.6   4.4    0.0012        11      97     165 ..      73     147 ..      60     161 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.014
   CPP1-like 100 aavflvlavltlvapaes...vpalllalglgasiyf 133
                 ++v ++l+++t + + ++    ++l++  +++   +f
  CTQ30103.1  10 VGVIAFLIGITTFINRDErrfRLQLAVYSAIIGVHFF 46 
                 6788888888888777776444444444455554444 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0012
   CPP1-like  97 liraavflvlavltlvapaesvpalllalglgasiyflnrKekklgravlltlvg......LvvGlllGsllasl 165
                 l+ + vf++l++++ + + +  ++ll ++g++as + l r ++  +r+v+++  +      L +G + G+l++++
  CTQ30103.1  73 LWVMTVFILLTLILGLGKLQHAMELLPIIGTVASTWALFRCKGLTVRCVMWCSTAcwvthnLWLGSIGGTLIEGS 147
                 4555667777777777777779*********************99999999865433333377788888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       708  (0.0394891); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1344.51
//
Query:       CTQ30104.1  [L=495]
Description: altronate hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-155  517.7   0.0   2.4e-155  517.2   0.0    1.2  1  GD_AH_C   D-galactarate dehydratase / Altronate hydrolase, C 
    9.2e-17   61.4   1.1    1.7e-16   60.6   1.1    1.4  1  SAF       SAF domain
  ------ inclusion threshold ------
      0.035   13.9   0.0       0.13   12.1   0.0    2.0  1  DAPDH_C   Diaminopimelic acid dehydrogenase C-terminal domain


Domain annotation for each model (and alignments):
>> GD_AH_C  D-galactarate dehydratase / Altronate hydrolase, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  517.2   0.0    4e-159  2.4e-155       2     392 .]     107     494 ..     106     494 .. 0.99

  Alignments for each domain:
  == domain 1  score: 517.2 bits;  conditional E-value: 4e-159
     GD_AH_C   2 tfkGYrradgrvGtrNyvlilptvecvnkvaeaiaeavkeel.klpnvdgvvalthqygcgqlgedaelllrtLaglakhPNvagvlvlglgcenlqie 99 
                 +++ Yrra+g+vG+rN+++ilptv+cvn++a+++++++ +e+   + +dgv+ ++h+ygc+qlg+d+ +++++L+++++hPN+++vlv+glgcen+q+e
  CTQ30104.1 107 EVQIYRRANGDVGVRNELWILPTVGCVNAMARQMQNRFLKETyGAEDIDGVHLFSHTYGCSQLGDDHINTRTMLQNMVRHPNAGAVLVVGLGCENNQVE 205
                 6789**********************************9998899****************************************************** PP

     GD_AH_C 100 elaeeikeadekpvevltiqesgtekeieagleaveelleeankakReevplseLvvglkCGgSDgfSGitANPavGaasdllvaaGgtailsEtpEli 198
                 +++e+++e d+++v+++++q++  ++e+eag+e++++l+e ++++kR++ +lseL++gl+CGgSDg+SGitANP++G++sd+++a+Ggt++l+E+pE++
  CTQ30104.1 206 AFRETLGEFDPQRVHFMVCQHQ--DDEVEAGVEHLHQLYEVMRQDKRQPGKLSELKFGLECGGSDGLSGITANPMLGRFSDYVIANGGTTVLTEVPEMF 302
                 *********************9..*************************************************************************** PP

     GD_AH_C 199 GaehllaeRavneevaekllklikkyeeyakaegadveenpspGNkagGLttieeKSlGaiaKggtspiedVleyaervkkkGlvlldtpgndlesvtg 297
                 Gae+ll++++++e++++kl+++++++++y+ a++++++enpspGNkagG+tt+e+KSlG+++K+g+s+++dVl+y+er+k +Gl+ll++pgnd++++++
  CTQ30104.1 303 GAEQLLMSHCRDEATFDKLVTMVNDFKQYFIAHDQPIYENPSPGNKAGGITTLEDKSLGCTQKAGSSQVVDVLRYGERLKVHGLNLLSAPGNDAVATSA 401
                 *************************************************************************************************** PP

     GD_AH_C 298 lvAaGanvvlFtTGrGtptgnpvvPviKvatntelaermsddiDvdagrilegeetieelgeellelilrvasGektkaeklgqeefviwkkgvv 392
                 l++aG+++vlF+TGrGtp+g  v P++K+atn+ela +++++iD+dag++l+g +t+ +l ee+++ i++ a+G++t++e+++++e++i+k+gv+
  CTQ30104.1 402 LAGAGCHMVLFSTGRGTPYGGFV-PTVKIATNSELAAKKKHWIDFDAGQLLHG-KTMPQLLEEFVDAIVAFANGKPTCNEQNDFRELAIFKSGVT 494
                 **********************9.***************************88.6************************************9985 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   1.1   2.8e-20   1.7e-16       1      63 []      10      81 ..      10      81 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 2.8e-20
                EEEEEESSTB-TT-BE..BTTTEEEECECGG.CCTSCCCGG.......HHHHTTEEESS-B-TT-B-BGGGEE CS
         SAF  1 dnVvvAardikaGevi..teddltlkrpias.hkigllpia.......ygeviGkratrdikaGepvhahnle 63
                dnV+vA++di+aG+v+  ++d++tl ++i++ hk++l +ia       yg +iG +a+ di++Ge+vhahn +
  CTQ30104.1 10 DNVAVALTDIAAGSVVtiDNDSVTLGQDIVRgHKFALRAIAkgenvvkYGLPIG-HALADIAPGEHVHAHNTR 81
                8*****************************************************.***************975 PP

>> DAPDH_C  Diaminopimelic acid dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.2e-05      0.13       9      71 ..      16      78 ..      10      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.2e-05
                HHHHHHHHHSSSEEEEEEE-SEE-HHHHHHHCTSTTECEEEEEEEE-HHHHHHHHTT--TT-- CS
     DAPDH_C  9 lnrllaeailpegktytfWGkGvsqghsdairriegvkdavqytiPveealekvrsgekpelt 71
                l+ + a ++++  ++    G+ + +gh  a+r i+  ++ v+y +P+ +al+ +  ge+ + +
  CTQ30104.1 16 LTDIAAGSVVTIDNDSVTLGQDIVRGHKFALRAIAKGENVVKYGLPIGHALADIAPGEHVHAH 78
                5667777888888999999************************************99987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3721.79
//
Query:       CTQ30105.1  [L=470]
Description: uronate isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.8e-227  754.7   0.1   4.2e-227  754.5   0.1    1.0  1  UxaC      Glucuronate isomerase


Domain annotation for each model (and alignments):
>> UxaC  Glucuronate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  754.5   0.1  2.4e-231  4.2e-227       1     464 []       1     465 [.       1     465 [. 1.00

  Alignments for each domain:
  == domain 1  score: 754.5 bits;  conditional E-value: 2.4e-231
        UxaC   1 mkkfleedfllsnetakklyheyakklPiiDyhchlspkeiaenkkfenltevwlegDhYkWramRanGveeklitGdasdkekflawaktvpktignP 99 
                 m++f++edfll++e+a++lyh+yak++Pi+Dyhchl+p+++aen +f+nl+++wl+gDhYkWramR+nGv+e+l+tGdasd+ekf+awa tvp+tignP
  CTQ30105.1   1 MTSFMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQVAENYRFKNLYDIWLKGDHYKWRAMRTNGVPERLCTGDASDREKFDAWAATVPHTIGNP 99 
                 899************************************************************************************************ PP

        UxaC 100 lyhWthleLkrvFgide.llseksaeeiwekanelLaeeefkarelleksnvevvcttDdPidsLeyhkklaedeefkvkvlPtfRPDkalkiekeefa 197
                 lyhWthleL+r Fgi++ lls+++a+eiw+++n+lLa+++f+ar +++++nv++v+ttDdPidsLe+h+++a+d++f++kvlP++RPDka++ie ++f+
  CTQ30105.1 100 LYHWTHLELRRPFGITGkLLSPSTADEIWDQCNDLLAQDAFSARGIMKQMNVKMVGTTDDPIDSLEHHAAVAKDNSFDIKVLPSWRPDKAFNIELATFN 198
                 ****************8799******************************************************************************* PP

        UxaC 198 dyvkkLeevseieiksfddllkalekrlefFeelGcrvsDhaleevvfaetkeeeleaifkkalegeelseeelekfktalllalaklyaekgwvmqlh 296
                 dy++kL+evs+++i++f+dl +al+krl++F+++Gc+vsDhal+ v fae++++el++i++++l+ge+lse+e+++fkta+l++l+ +ya++gwv+q+h
  CTQ30105.1 199 DYMAKLGEVSDTDIRRFADLQSALTKRLDHFAAHGCKVSDHALDVVLFAEATDAELDDILARRLAGETLSEHEVAQFKTAVLVFLGAEYARRGWVQQYH 297
                 *************************************************************************************************** PP

        UxaC 297 lgalRnnnsklleklGadtGfDsigdeeiakelaklldkldkkdelpktilyslnprdnevlatiigsFqdegvkgklqlGaaWWFnDtkdgmekqlka 395
                 +galRnnn + ++ lG+d+GfDsi+d+++a+el+kll+k ++++ lpktily+lnprdnevl+t+ig+Fq+eg++gk+q+G++WWFnD+kdgme+q+++
  CTQ30105.1 298 IGALRNNNLRQFKLLGPDVGFDSINDRPMAEELSKLLSKQNEENLLPKTILYCLNPRDNEVLGTMIGNFQGEGMPGKMQFGSGWWFNDQKDGMERQMTQ 396
                 *************************************************************************************************** PP

        UxaC 396 lanvgllskFvGmltDsRsflsytRheyFRrilcdligewveegevpedeellgelvkdicynnakeyf 464
                 la++glls+FvGmltDsRsflsytRheyFRrilc++ig+wv  ge p+d +llge+vk+ic+nna++yf
  CTQ30105.1 397 LAQLGLLSRFVGMLTDSRSFLSYTRHEYFRRILCQMIGRWVAAGEAPADIALLGEMVKNICFNNARDYF 465
                 ********************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3436.40
//
Query:       CTQ30106.1  [L=433]
Description: hexuronate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-56  192.0  42.3    1.1e-47  162.8  21.9    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.8  21.9   5.9e-52   1.1e-47       2     268 ..      16     287 ..      15     301 .. 0.89
   2 !   34.4  13.8   6.1e-13   1.1e-08      60     182 ..     301     421 ..     288     432 .. 0.83

  Alignments for each domain:
  == domain 1  score: 162.8 bits;  conditional E-value: 5.9e-52
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                  l+++l +l+r+++++a+p +l+e+l+is ++++ ++++y++++ v+++++G++ d +G +  + + ++++a+++   ++ +++w  l+++r   G+++
  CTQ30106.1  16 TLGTVLGYLTRNTVAAAAP-TLMEELHISTQQYSYIIAAYSAAYTVMQPVAGYVLDILGTKIGYAFFAIAWAVFCGSTAL-AGSWgGLALARGAVGAAE 112
                 6899***************.9*****************************************999999999999444445.99999************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........kg 190
                 +a++pag+ + ++wfp +er+ a+g++++g+s+Ga+++p+l  + +   +W+ +f+i +++s+ +++ +l+++  ++ ++k + ++++         ++
  CTQ30106.1 113 AAMIPAGLKASSEWFPAKERSIAVGYFNVGSSIGAMIAPPLVVWAIVMHSWQMAFIISGVLSFAWAIAWLIFYKHPRDQKKLSDEERDYiiggqesqHQ 211
                 *******************************************************************8777776666666666666666******8855 PP

       MFS_1 191 tgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrls 268
                 t +a+  ++w++l++++ +w + +  +l+  ++ ++ +++pl++ +v+g++ l +++++  +++l++  +++++g+l 
  CTQ30106.1 212 TNNAKKMSPWQILRNRQ-FWGIALPRFLAEPAWGTFNAWIPLFMFKVYGFN-LKEIAMFAWMPMLFADLGCIVGGYLP 287
                 555555557*9999999.9966666666666********************.************************85 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 6.1e-13
       MFS_1  60 GrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyila 158
                 +r+ v+ +g+ll++  ++++lf +s ++ ++l ++ G++  al  a ++l +d+f ++e + a+gl ++++ l++ + +l+ g+la+ +g++ +f +la
  CTQ30106.1 301 SRKMVVTMGALLMIGPGMIGLF-TSPYVAIALLCIGGFAHQALSGALITLSSDVFGRNEVATANGLTGMAAWLASTMFALVVGALADTIGFSPLFAVLA 398
                 4555777777777777999998.55459***********************************************9999******************** PP

       MFS_1 159 ivsllafvlfllllpeepperkrk 182
                 ++ ll++++ ++ ++ ++p+   +
  CTQ30106.1 399 VFDLLGALV-IWTVLKNKPADDDS 421
                 *****9884.45555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3119.26
//
Query:       CTQ30107.1  [L=258]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-22   79.4   0.3    2.1e-22   78.5   0.3    1.5  1  GntR      Bacterial regulatory proteins, gntR family
    1.7e-18   67.2   3.7    2.6e-18   66.6   3.7    1.3  1  FCD       FCD domain
     0.0027   18.0   0.0     0.0077   16.6   0.0    1.8  1  Rrf2      Transcriptional regulator
      0.004   17.1   0.2      0.026   14.5   0.0    2.1  2  HTH_46    Winged helix-turn-helix DNA binding
  ------ inclusion threshold ------
       0.12   12.4   0.3       0.57   10.2   0.0    2.2  2  HTH_11    HTH domain


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.3     6e-26   2.1e-22       1      64 []       9      72 ..       9      72 .. 0.99

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 6e-26
                HHHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  1 lyeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                ly+q++++L+ +I +g++  GdkLP+er +a+e +Vsrt+vReA+++Le eg+ve+r+g+G++V
  CTQ30107.1  9 LYQQLAAELKTRIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVRKGSGIHV 72
                79************************************************************98 PP

>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   3.7   7.3e-22   2.6e-18       1     124 [.      96     219 ..      96     220 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 7.3e-22
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrr..lrrlals..sperlee 95 
                 +l+++R+l+E+ +a+ aa+++t++d+ +l e+ e+ +     +d    +e d++FH  +a a++n  la+++e ++++  +  +++  ++  + ++ ++
  CTQ30107.1  96 ELLQARQLIESNIAEFAATQVTKQDIMKLMEIQEKARNEKCFRD----SEWDLQFHVQVALATQNSALAAIVEKMWTQRVHnpYWKKLHEhiDLRTVDN 190
                 799******************************99999988888....79***************************999867777777799******* PP

         FCD  96 slaeHraildAirardadaAraamrrHle 124
                 ++++H +il+A++++d+ aA+ am++Hle
  CTQ30107.1 191 WCDDHDQILKALLRKDPNAAKLAMWQHLE 219
                 ****************************8 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.1e-06    0.0077      29      63 ..      36      69 ..      29      84 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.1e-06
                HHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-T CS
        Rrf2 29 eeiaerqnispsylekilakLrkaglvksvrGkgG 63
                + ia++ n+s+++++  + +L+ +g+v++++G  G
  CTQ30107.1 36 RFIADEKNVSRTVVREAIIMLEVEGYVEVRKGS-G 69
                569*****************************8.4 PP

>> HTH_46  Winged helix-turn-helix DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   7.2e-06     0.026      24      63 ..      33      72 ..      27      78 .. 0.87
   2 ?   -0.3   0.1      0.31   1.1e+03       5      21 ..     117     133 ..     114     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.2e-06
      HTH_46 24 nvlkyIqkrtnLSrSsimkvLseLkkggyIeierGkLvki 63
                 +  +I +  n+Sr ++ + +  L  +gy+e+++G  +++
  CTQ30107.1 33 PAERFIADEKNVSRTVVREAIIMLEVEGYVEVRKGSGIHV 72
                6789******************************975555 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.31
      HTH_46   5 iralLleLielpeelre 21 
                  ++ +++L+e +e+ r+
  CTQ30107.1 117 TKQDIMKLMEIQEKARN 133
                 5788999******9997 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00016      0.57      20      54 ..      37      70 ..      35      71 .. 0.89
   2 ?   -1.3   0.0      0.59   2.1e+03       4      15 ..     197     208 ..     195     213 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00016
      HTH_11 20 eLAeeLnvSrrtvrrdIkaLeelgvpIesepgrGY 54
                ++A+e nvSr++vr  I  Le  g  +e ++g+G+
  CTQ30107.1 37 FIADEKNVSRTVVREAIIMLEVEG-YVEVRKGSGI 70
                69****************999999.8888888885 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.59
      HTH_11   4 qilelLleargp 15 
                 qil+ Ll+++++
  CTQ30107.1 197 QILKALLRKDPN 208
                 899999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       966  (0.0538792); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2007.25
//
Query:       CTQ30108.1  [L=220]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-22   78.6   4.0      1e-21   77.6   4.0    1.5  1  SNARE_assoc  SNARE associated Golgi protein


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   4.0   5.7e-26     1e-21       1     120 []      48     174 ..      48     174 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 5.7e-26
  SNARE_assoc   1 lPsevllvaaGvlf.....glllgtlvtslgallGaslayllgrylgrkalrrkllsekrvka...lerlverygflallllrllpivPrdlvnyvaG 90 
                  lP++ llv++Gvl+     g+  ++l++ ++a+lG++l+y+ gr+lg+ ++++ +ls+ + ++   +++l++++g +all++r++++v r+l++ +aG
   CTQ30108.1  48 LPGDSLLVLVGVLIakgamGFPETLLLLTAAASLGCWLSYIQGRWLGNTRIVQNWLSHLPSHYhqrAHHLFHKHGLSALLIGRFIAFV-RTLLPTIAG 144
                  69************999999999*********************************9877777778**********************.********* PP

  SNARE_assoc  91 ltrvsfkrFflatfiGsipwalvyaylGsl 120
                  l++++ +rF ++++++ ++w+l+++ lG+l
   CTQ30108.1 145 LSGLNNARFQFFNWMSGLLWVLILTSLGYL 174
                  ****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1751.63
//
Query:       CTQ30109.1  [L=128]
Description: conserved hypothetical protein; puttaive outer membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-13   50.4   0.0    2.9e-13   50.1   0.0    1.1  1  SecD-TM1  SecD export protein N-terminal TM region


Domain annotation for each model (and alignments):
>> SecD-TM1  SecD export protein N-terminal TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   1.6e-17   2.9e-13      19     103 .]      24     106 ..      10     106 .. 0.88

  Alignments for each domain:
  == domain 1  score: 50.1 bits;  conditional E-value: 1.6e-17
    SecD-TM1  19 gllyalPnlygedpavqisaakatlkvdeatlskveqaLkeagievksielenesllvrfestdqqlkAkdvlekaLgddyvvAl 103
                 +l+  +  + +++ ++ i++  +++ +++++  +v ++L+++gi++ksi++++++ll+ f+st q+++Ak+vl +aL+++y++Al
  CTQ30109.1  24 ALFWLWLAVQQQEATLAIRPVGQGIGMPDGF--SVWHHLDANGIRFKSITPQKDGLLIKFDSTAQSAAAKEVLGRALPHGYIIAL 106
                 333444566788999****************..9**************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1097.03
//
Query:       CTQ30110.1  [L=122]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-37  127.4  17.5    2.7e-37  127.2  17.5    1.0  1  DUF1090        Protein of unknown function (DUF1090)
  ------ inclusion threshold ------
      0.011   15.9   1.4       0.37   11.0   0.0    2.5  3  DUF4148        Domain of unknown function (DUF4148)
      0.013   15.7  12.4        0.3   11.3  12.2    2.4  1  ABC_tran_CTD   ABC transporter C-terminal domain
      0.026   14.5   0.0      0.067   13.2   0.0    1.7  1  PepSY_2        Peptidase propeptide and YPEB domain
       0.14   12.4  19.8        8.1    6.7  19.8    2.8  1  FliJ           Flagellar FliJ protein
       0.28   10.5   4.3       0.58    9.5   4.3    1.5  1  Viral_env_E26  Virus envelope protein E26
       0.29   10.3   9.7       0.32   10.2   9.7    1.1  1  DUF1682        Protein of unknown function (DUF1682)
       0.41    9.2   8.6        0.5    8.9   8.6    1.0  1  FapA           Flagellar Assembly Protein A
       0.54    9.8  10.3       0.58    9.7  10.3    1.1  1  Exonuc_VII_L   Exonuclease VII, large subunit
       0.71    9.9   5.1        1.1    9.3   5.1    1.3  1  DUF3043        Protein of unknown function (DUF3043)
       0.82    9.4  11.9       0.32   10.7   8.5    1.8  2  EMC3_TMCO1     Integral membrane protein EMC3/TMCO1-like
       0.96   10.4   6.9        1.4    9.9   6.9    1.3  1  Gastrin        Gastrin/cholecystokinin family
       0.97    8.1   2.3        1.1    7.9   2.3    1.0  1  O-antigen_lig  O-antigen ligase like membrane protein
        3.5    8.3  11.2         20    5.9  11.2    2.0  1  U1snRNP70_N    U1 small nuclear ribonucleoprotein of 70kDa MW
        5.1    6.4  12.4        6.5    6.0  12.4    1.2  1  DUF4407        Domain of unknown function (DUF4407)
        8.3    4.8   5.3        8.9    4.7   5.3    1.1  1  FUSC           Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> DUF1090  Protein of unknown function (DUF1090)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2  17.5   2.4e-40   2.7e-37       3     109 ..       9     115 ..       7     116 .. 0.94

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 2.4e-40
     DUF1090   3 llslaaaaaaaalsgCaaKkqaIekqieaAkahgnqkrvagLekaLkevkanCtdeklkaerqekveekeeeVaereaeLaeakekgdkdkiakrqekL 101
                 l+ ++++a a a+s C++K+q+I+++i++A++h+nq+r++gL++aL++v++nC+d+klka++q+k+++++ee+aer+++L+ea++kgd+dki+krq+kL
  CTQ30110.1   9 LVLTSLSASALAASPCQEKEQDIQREISYAEKHHNQSRIDGLNTALRQVRENCSDSKLKADHQQKIAKQREEIAERQRDLQEARKKGDADKINKRQHKL 107
                 5556666677889************************************************************************************** PP

     DUF1090 102 aeakeeLk 109
                 +ea++eLk
  CTQ30110.1 108 NEAQQELK 115
                 *******9 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00033      0.37       1      22 [.       1      38 [.       1      73 [. 0.79
   2 ?    3.6   0.1     0.068        77      31      44 ..      82      95 ..      82     105 .. 0.83
   3 ?   -1.9   0.1       3.6     4e+03      34      42 ..     111     119 ..     108     122 .] 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00033
     DUF4148  1 Mkstliaaalaaavaaaaala.................a 22
                Mk+ +ia++l++++++a+ala                 a
  CTQ30110.1  1 MKH-RIALLLVLTSLSASALAaspcqekeqdiqreisyA 38
                997.559999999*******9888877666555555551 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.068
     DUF4148 31 AqVraELaqaeaaG 44
                A+ +++L++a++ G
  CTQ30110.1 82 AERQRDLQEARKKG 95
                56689*******99 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.6
     DUF4148  34 raELaqaea 42 
                 ++EL+ +e+
  CTQ30110.1 111 QQELKTLES 119
                 799999987 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  12.2   0.00027       0.3      14      63 ..      71     120 ..      24     120 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00027
  ABC_tran_CTD  14 eaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelyer 63 
                    ++I++  eeiae +  l+++    d +k+++ + +l+e+++eL++l++r
    CTQ30110.1  71 QQKIAKQREEIAERQRDLQEARKKGDADKINKRQHKLNEAQQELKTLESR 120
                   589******************988999********************998 PP

>> PepSY_2  Peptidase propeptide and YPEB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.9e-05     0.067       2      31 ..       5      34 ..       4      45 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.9e-05
     PepSY_2  2 aalalalallaaaAlAgrrdtdspkadwlp 31
                +al+l+l+ l+a AlA++++++++++ +  
  CTQ30110.1  5 IALLLVLTSLSASALAASPCQEKEQDIQRE 34
                7899************99999999876655 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  19.8    0.0073       8.1      33     114 ..      25     107 ..      17     115 .. 0.92

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0073
        FliJ  33 kqlsgeaq.glsaaelrnyqafisaldeaiaqqkqelaqaekqvekareewqearqerkklekLkerekkeeqkeenrrEqkq 114
                 ++++++ q  +s ae ++ q+ i+ l++a+ q ++++++++ + +++++  ++ +   +  + L+e +kk  + ++n+r  k+
  CTQ30110.1  25 QEKEQDIQrEISYAEKHHNQSRIDGLNTALRQVRENCSDSKLKADHQQKIAKQREEIAERQRDLQEARKKGDADKINKRQHKL 107
                 55666665599********************************************************************9986 PP

>> Viral_env_E26  Virus envelope protein E26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   4.3   0.00052      0.58      38     120 ..      12     105 ..       4     110 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00052
  Viral_env_E26  38 tsttvtsvipknyqekrqkichiisslrnthlnfnkiq.............svhkkklrhlqnllrkkneiiaelvrklesaqkktarrsiskpah 120
                    ts + +++     qek q i   is   + h n  +i+             s  k k  h q+ + k+ e iae  r l+ a+kk     i k  h
     CTQ30110.1  12 TSLSASALAASPCQEKEQDIQREISYAEK-HHNQSRIDglntalrqvrencSDSKLKADHQQK-IAKQREEIAERQRDLQEARKKGDADKINKRQH 105
                    56666666666677777777777665433.333333321101001011111334555566665.56667778**************9999999887 PP

>> DUF1682  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   9.7   0.00028      0.32     218     304 ..      31     117 ..       7     121 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00028
     DUF1682 218 lilslrlpssssdleelspllklvlrliDklakraklrpevlkklkktReevekklkkeaeeeka.Eeaqekkeeekkkereeklakl 304
                 ++ ++++ +++++ + +  l +++ ++ ++++   kl+++ ++k+ k+Ree++++ +  +e++k+ ++ + +k++ k  e +++l+ l
  CTQ30110.1  31 IQREISYAEKHHNQSRIDGLNTALRQVRENCS-DSKLKADHQQKIAKQREEIAERQRDLQEARKKgDADKINKRQHKLNEAQQELKTL 117
                 44445555444456777778888888899999.7899999999999999999999999888766624444556666666666666655 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   8.6   0.00045       0.5     317     405 ..      24     118 ..       8     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00045
        FapA 317 Gselgtkteiev.gldepelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletk.....eklkeeleeleeelkelk 405
                 + e ++ ++ e+   ++++ +++++ l++ l++++e++ + k k ++ +k++++ +  +e++ +l++++++      +k + +l+e ++elk+l+
  CTQ30110.1  24 CQEKEQDIQREIsYAEKHHNQSRIDGLNTALRQVRENCSDSKLKADHQQKIAKQREEIAERQRDLQEARKKGdadkiNKRQHKLNEAQQELKTLE 118
                 447778888888666667777788**************************999888888888888888888877666666666666666666665 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  10.3   0.00052      0.58     151     243 ..      26     118 ..       6     122 .] 0.45

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00052
  Exonuc_VII_L 151 elerrlekaikrll.eekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl.kekleekkerlkklkerlelle 243
                   e e+ ++++i+ +  +++++r++ l+++l++ +e +++++ + d+ ++++ + +++++++++++l+e++++   +k+++++++l++ +++l++le
    CTQ30110.1  26 EKEQDIQREISYAEkHHNQSRIDGLNTALRQVRENCSDSKLKADH-QQKIAK-QREEIAERQRDLQEARKKGdADKINKRQHKLNEAQQELKTLE 118
                   333333333333221223344455555554444444444444444.333333.344444444444444444433444444444444444444333 PP

>> DUF3043  Protein of unknown function (DUF3043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.1   0.00099       1.1      11      60 ..      57     104 ..      48     110 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00099
     DUF3043  11 eaeaarrrplvapktrkearkrareaarerrerareamraGderylpard 60 
                   e  +  + + +++++++ +++re+ +er++  +ea ++Gd +++ +r 
  CTQ30110.1  57 VRE--NCSDSKLKADHQQKIAKQREEIAERQRDLQEARKKGDADKINKRQ 104
                 443..333334678888889999*********************999986 PP

>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.39   4.4e+02      47      73 ..      24      50 ..       6      68 .. 0.72
   2 ?   10.7   8.5   0.00029      0.32      41      88 ..      68     115 ..      50     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.39
  EMC3_TMCO1 47 eqkrekelqkrarelqkngdklklkkl 73
                 q++e+++q++   ++k++++ + + l
  CTQ30110.1 24 CQEKEQDIQREISYAEKHHNQSRIDGL 50
                577888888888888887777665554 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00029
  EMC3_TMCO1  41 kkkmekeqkrekelqkrarelqkngdklklkklekrqeelmedqsemm 88 
                  + ++k+ k+ +e+ +r+r lq+ ++k   +k++krq++l+e+q+e+ 
  CTQ30110.1  68 ADHQQKIAKQREEIAERQRDLQEARKKGDADKINKRQHKLNEAQQELK 115
                 44569999************************************9975 PP

>> Gastrin  Gastrin/cholecystokinin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   6.9    0.0012       1.4       3     108 ..       5     122 .]       3     122 .] 0.57

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0012
     Gastrin   3 icvcvllavlsasslgkpvsksseavleeaeesleeaqrharaaasskqlkalqradeeedqranlseLLarl..........lsqkkk.gsvrrlsaa 90 
                 i ++++l  lsas+l+ +  + +e+ ++++ +  e++++++r +  + +l++++++ ++++ +a  ++ +a+           l++++k g   ++   
  CTQ30110.1   5 IALLLVLTSLSASALAASPCQEKEQDIQREISYAEKHHNQSRIDGLNTALRQVRENCSDSKLKADHQQKIAKQreeiaerqrdLQEARKkGDADKINKR 103
                 678889999999999888875555555555455556666666655555554443332233222222222222222223333446666666888888888 PP

     Gastrin  91 ksrlqsldanhr.ikDRdY 108
                 + +l++++++ +  + RdY
  CTQ30110.1 104 QHKLNEAQQELKtLESRDY 122
                 8888887777666889998 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.3     0.001       1.1     252     350 ..       7     115 ..       2     121 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.001
  O-antigen_lig 252 illvligillaiypyspiyrrkelkekeieiksekkeeeeikne......ikenykseglk....eavleqyeyandkqfsqellkeeveslllsn 337
                    +llvl+ +++++ + sp+ ++++  ++ei   ++ +++++i+        + en    +lk    +++ +q e+  + q   + + ++  + ++++
     CTQ30110.1   7 LLLVLTSLSASALAASPCQEKEQDIQREISYAEKHHNQSRIDGLntalrqVRENCSDSKLKadhqQKIAKQREEIAERQRDLQEARKKGDADKINK 102
                    344445555577777888887766666666555444444443335555553333333333333335555555555555555555666666777888 PP

  O-antigen_lig 338 Rdlqlkvlkqvyk 350
                    R+ +l + +q  k
     CTQ30110.1 103 RQHKLNEAQQELK 115
                    8888888777665 PP

>> U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  11.2     0.018        20      22      87 ..      34      94 ..      23     120 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.018
  U1snRNP70_N 22 pldydpekrktkkkitGvaaflselkedeeeqeppektetkeekkererkekkekkeekleealee 87
                  ++y+ +++++ + i+G+   l++++e    + + +k ++ +++k+ +++e+ +++++ l+ea ++
   CTQ30110.1 34 EISYAEKHHNQ-SRIDGLNTALRQVRE----NCSDSKLKADHQQKIAKQREEIAERQRDLQEARKK 94
                 45555555545.78***********65....67777788999999999999999999999998776 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  12.4    0.0058       6.5     127     203 ..      39     118 ..      11     121 .. 0.35

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0058
     DUF4407 127 laaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk...gtgttgvaGkgpaakekkaqldaaqaelaelk 203
                  + + +++++ l++ +++ +++ +  + ++d +++ a++  + +      ++ +++G+ +   +++ +l++aq+el++l+
  CTQ30110.1  39 EKHHNQSRIDGLNTALRQVRENCSDSKLKADHQQKIAKQREEIAErqrDLQEARKKGDADKINKRQHKLNEAQQELKTLE 118
                 11112223333333333222222221111111111111111111111211122345555555555555555555555554 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.3     0.008       8.9     240     324 ..      33     117 ..       5     121 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.008
        FUSC 240 rllarlraeeaaavpe.laallaelaal.eaaaaaealeaalaalrarlralrraleadadtaalllarlaellaelaqllaslral 324
                 r+     +++++++ + l + l+++++  +++++++++++++a  r+++++ +r+l+   +++   +     + ++l +++++l++l
  CTQ30110.1  33 REISYAEKHHNQSRIDgLNTALRQVRENcSDSKLKADHQQKIAKQREEIAERQRDLQ--EARKKGDADKINKRQHKLNEAQQELKTL 117
                 444444444555544478888888888887788999999999999999999999999..3333333444555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2855  (0.159239); expected 358.6 (0.02)
Passed bias filter:                      743  (0.0414412); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 1016.81
//
Query:       CTQ30111.1  [L=101]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-31  107.8   2.3    3.7e-31  107.6   2.3    1.0  1  DUF883           Bacterial protein of unknown function (DUF88
    0.00028   21.0   1.0    0.00044   20.4   1.0    1.3  1  ApoLp-III        Apolipophorin-III precursor (apoLp-III)
     0.0014   19.1  13.3       0.18   12.4   1.3    2.9  2  YtxH             YtxH-like protein
     0.0031   17.4   5.7      0.004   17.1   5.7    1.1  1  Apolipoprotein   Apolipoprotein A1/A4/E domain
  ------ inclusion threshold ------
      0.014   16.1   4.2      0.019   15.6   2.9    1.8  2  DUF4404          Domain of unknown function (DUF4404)
      0.018   15.5   0.5      0.018   15.5   0.5    2.0  2  HisKA_3          Histidine kinase
      0.024   14.4   0.0      0.033   13.9   0.0    1.2  1  Gly-zipper_YMGG  YMGG-like Gly-zipper
      0.053   13.5   0.1      0.068   13.2   0.1    1.3  1  RelB_leu_zip     RelB leucine zipper
      0.066   12.6   0.4      0.076   12.4   0.4    1.0  1  RNase_E_G        Ribonuclease E/G family
      0.069   12.8   0.2      0.084   12.5   0.2    1.2  1  Mt_ATP-synt_B    Mitochondrial ATP synthase B chain precursor
      0.071   13.1   0.1        0.1   12.6   0.1    1.5  1  DUF543           Domain of unknown function (DUF543)
       0.13   12.3   1.4       0.18   11.9   0.6    1.6  2  DUF1451          Zinc-ribbon containing domain
       0.14   12.2   0.1       0.16   12.0   0.1    1.1  1  MCU              Mitochondrial calcium uniporter
       0.14   12.2   2.7      0.079   13.1   0.4    1.6  2  Spore_III_AB     Stage III sporulation protein AB (spore_III_
       0.22   11.2   1.0        6.5    6.5   0.3    2.2  2  Nbl1_Borealin_N  Nbl1 / Borealin N terminal


Domain annotation for each model (and alignments):
>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.6   2.3   3.1e-34   3.7e-31       1      94 []       8     101 .]       8     101 .] 0.99

  Alignments for each domain:
  == domain 1  score: 107.6 bits;  conditional E-value: 3.1e-34
      DUF883   1 eeleaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVrenPwqavGiAagvGlllGlLlarR 94 
                 ++l+ael++l ++lee+l+++ad+++ee+ +lR+++e++l+++r+rl +++ea+ ++++e a++addyVrenPw+ vGi+a+vGl+lG+Ll+rR
  CTQ30111.1   8 DDLRAELKTLADTLEEVLNSSADKSKEEMGKLRSKAESALKESRARLGETSEAILRQTRETAARADDYVRENPWTGVGIGAAVGLVLGVLLSRR 101
                 5899*****************************************************************************************9 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   1.0   3.7e-07   0.00044      21      88 ..       8      75 ..       3      78 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.7e-07
   ApoLp-III 21 eevvetiKensenlvdqlkqvikslqeelkkksdeleealkevkkkieetadklseenPevkkkaqel 88
                ++   ++K+ +++l + l++ +++ +ee+ k  +++e+alke+++ + et + +  +  e++  a+++
  CTQ30111.1  8 DDLRAELKTLADTLEEVLNSSADKSKEEMGKLRSKAESALKESRARLGETSEAILRQTRETAARADDY 75
                566678899999999999999**********************************9999999999987 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   4.7   0.00071      0.85      26      69 ..       6      49 ..       4      79 .. 0.90
   2 !   12.4   1.3   0.00015      0.18       2      19 ..      82      99 ..      81     101 .] 0.91

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00071
        YtxH 26 tRkdlkekaddlkekakelleeakekakekaedlkekvkekade 69
                + +dl+ ++++l++ ++e+l++ ++k+ke+  +l++k+++  +e
  CTQ30111.1  6 VTDDLRAELKTLADTLEEVLNSSADKSKEEMGKLRSKAESALKE 49
                56899999*******************99999999999988776 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00015
        YtxH  2 lglliGaavGaaaglLlA 19
                +g+ iGaavG ++g+Ll+
  CTQ30111.1 82 TGVGIGAAVGLVLGVLLS 99
                79**************97 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   5.7   3.3e-06     0.004      68     135 ..       7      70 ..       2      80 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.3e-06
                     HHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH CS
  Apolipoprotein  68 leelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerhvealkarlapyveelrqklaerle 135
                     +++lr++l+++++ l e l+  a++ +e +     +lr+++e+++++ +arl++ +e +  + +e + 
      CTQ30111.1   7 TDDLRAELKTLADTLEEVLNSSADKSKEEM----GKLRSKAESALKESRARLGETSEAILRQTRETAA 70 
                     466666666666666666666665555553....3466666666666666666666666655555444 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   2.9   1.6e-05     0.019      15      58 ..       3      48 ..       1      63 [. 0.87
   2 ?    2.1   0.1      0.25     3e+02      15      46 ..      43      74 ..      36      79 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.6e-05
     DUF4404 15 nesldeetralLeslaedieellaeedaaaeeee..laerlneave 58
                +e++ ++ ra+L++la+ +ee+l++++++++ee   l  ++++a++
  CTQ30111.1  3 KENVTDDLRAELKTLADTLEEVLNSSADKSKEEMgkLRSKAESALK 48
                578999***********************99987888777777765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.25
     DUF4404 15 nesldeetralLeslaedieellaeedaaaee 46
                 es+ +e+ra+L +  e i ++ +e +a+a++
  CTQ30111.1 43 AESALKESRARLGETSEAILRQTRETAARADD 74
                56777888999999999998888887777665 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.5   1.5e-05     0.018      20      62 ..      14      56 ..       9      62 .. 0.90
   2 ?    1.6   0.2      0.35   4.2e+02      37      57 ..      57      77 ..      52      79 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.5e-05
                HHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3 20 iklqlelakrllekdpekaaeqlreieelarealqevRrllhn 62
                +k +++++++ l+++++k +e++ ++++ a++al+e R+ l++
  CTQ30111.1 14 LKTLADTLEEVLNSSADKSKEEMGKLRSKAESALKESRARLGE 56
                6788999*******************************98876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.35
                HHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3 37 kaaeqlreieelarealqevR 57
                  ++ lr+ +e+a +a + vR
  CTQ30111.1 57 TSEAILRQTRETAARADDYVR 77
                445556666666666655555 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.7e-05     0.033      25      42 ..      80      97 ..      73     101 .] 0.79

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.7e-05
                     XXXXXXXXXXXXXXXXXX CS
  Gly-zipper_YMGG 25 ggkGAaiGAaaGalaGga 42
                      ++G +iGAa+G + G +
       CTQ30111.1 80 PWTGVGIGAAVGLVLGVL 97
                     567889999999998876 PP

>> RelB_leu_zip  RelB leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   5.7e-05     0.068       5      65 ..      41     100 ..      27     101 .] 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.7e-05
  RelB_leu_zip   5 rvarksakpelgalGsadLsslsLavsRtt.eiideYikengfgLeGaqaglgeglPrLvsr 65 
                    +a +++k+ +  lG  + s   L  +R t +  d+Y++en++   G  a  g  l +L sr
    CTQ30111.1  41 SKAESALKESRARLG--ETSEAILRQTRETaARADDYVRENPWTGVGIGAAVGLVLGVLLSR 100
                   455556666667775..44677777777777789*********8877666666666677665 PP

>> RNase_E_G  Ribonuclease E/G family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   6.4e-05     0.076      51     125 ..       2      78 ..       1      83 [. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.4e-05
   RNase_E_G  51 aegaseeelekdleelkkkweeileka..kkrkapsllyeeedlllrvlrdllnedieeivvddkelyeeikeylee 125
                 a++  +++l+++l+ l+++ ee+l+++  k+++++  l ++++ +l+  r  l e+ e i+ +++e+  ++ +y++e
  CTQ30111.1   2 AKENVTDDLRAELKTLADTLEEVLNSSadKSKEEMGKLRSKAESALKESRARLGETSEAILRQTRETAARADDYVRE 78 
                 67777899****************9996655778999***********************************99965 PP

>> Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   7.1e-05     0.084      32      70 ..      15      53 ..      12      76 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.1e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Mt_ATP-synt_B 32 kslgpsikefldkriekiqeelnqsrnlkeealkerieq 70
                   k+l+++++e l++ ++k +ee+ + r++ e+alke+   
     CTQ30111.1 15 KTLADTLEEVLNSSADKSKEEMGKLRSKAESALKESRAR 53
                   89********************************99765 PP

>> DUF543  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   8.5e-05       0.1      15      49 ..      67     101 .]      22     101 .] 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.5e-05
      DUF543  15 sdldekwDaclsnllvkvglgllvGvvasvllfrr 49 
                 ++  +  D + +n    vg+g++vG v++vll rr
  CTQ30111.1  67 ETAARADDYVRENPWTGVGIGAAVGLVLGVLLSRR 101
                 56666678888888899***************996 PP

>> DUF1451  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   0.00015      0.18      59     101 ..       4      46 ..       1      60 [. 0.87
   2 ?    0.3   0.1      0.53   6.4e+02      16      44 ..      49      77 ..      41      79 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
     DUF1451  59 eeleewlsldlelieesllealasiaDktqvelaelaedleha 101
                 e++++ l+ +l+++ ++l e l s aDk++ e+ +l++++e+a
  CTQ30111.1   4 ENVTDDLRAELKTLADTLEEVLNSSADKSKEEMGKLRSKAESA 46 
                 5678899*****************************9998854 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.53
     DUF1451 16 elvekakeklseaeeltkeelelvaeylk 44
                e      e  ++  + t+e +++  +y++
  CTQ30111.1 49 ESRARLGETSEAILRQTRETAARADDYVR 77
                33333333333333456777777777776 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00014      0.16      34     106 ..      13      94 ..       2      98 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
                 XXXXXXXXXX-SS.........SSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCCCGGGCHHHHGGGHHHHHHHHTHHH CS
         MCU  34 rvkqlvkalesal.........nveeeqlkkereleekleelreelepleekkeeidekAerrtrrllwagLallavqlgil 106
                 ++k+l+++le++l         ++ + ++k e++l+e+ ++l e  e + ++ +e +++A+  +r   w+g ++ a+   +l
  CTQ30111.1  13 ELKTLADTLEEVLnssadkskeEMGKLRSKAESALKESRARLGETSEAILRQTRETAARADDYVRENPWTGVGIGAAVGLVL 94 
                 4667777777777888888888888888999999999999999999999999*******************99877766555 PP

>> Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   6.6e-05     0.079      38      91 ..       8      64 ..       3      79 .. 0.75
   2 ?    1.0   0.4      0.35   4.1e+02     132     169 ..      57      94 ..      45      98 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.6e-05
                  HHHHHHHHH-SS-HHHHHHHHHHCS-TTHHHHHHHHHHHHH.S...TSS-HHHHHHH CS
  Spore_III_AB 38 ellegeirygatpLpealeklaeksesplseffeevaerleek...egesfeeawee 91
                    l++e++  a +L+e+l++ a ks+++++++ +++ + l+e+    ge+ e ++++
    CTQ30111.1  8 DDLRAELKTLADTLEEVLNSSADKSKEEMGKLRSKAESALKESrarLGETSEAILRQ 64
                  56899***************************9999999987324333333333333 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.35
                   HHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXX CS
  Spore_III_AB 132 aleeleeeieeareeakkkeklyrtlGvlaGlflvilL 169
                   + e + ++ +e + +a+ + +     Gv +G+++ ++L
    CTQ30111.1  57 TSEAILRQTRETAARADDYVRENPWTGVGIGAAVGLVL 94 
                   45555555555555555555555555666665555544 PP

>> Nbl1_Borealin_N  Nbl1 / Borealin N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.042        50      18      35 ..       8      25 ..       3      31 .. 0.79
   2 ?    6.5   0.3    0.0054       6.5      15      35 ..      34      54 ..      32      68 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.042
  Nbl1_Borealin_N 18 rrlraelelllktlrnrf 35
                       lrael++l++tl+  +
       CTQ30111.1  8 DDLRAELKTLADTLEEVL 25
                     568999999999998665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0054
  Nbl1_Borealin_N 15 eRirrlraelelllktlrnrf 35
                     e + +lr+++e+ lk+ r+r+
       CTQ30111.1 34 EEMGKLRSKAESALKESRARL 54
                     56789*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1754  (0.0978303); expected 358.6 (0.02)
Passed bias filter:                     1205  (0.0672095); expected 358.6 (0.02)
Passed Vit filter:                       169  (0.00942607); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 863.34
//
Query:       CTQ30112.1  [L=132]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-18   66.8  14.1    1.9e-18   66.6  14.1    1.0  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
  ------ inclusion threshold ------
      0.054   12.4   1.1      0.066   12.1   1.1    1.0  1  Serinc           Serine incorporator (Serinc)
        1.1    8.9   4.2        1.7    8.3   4.2    1.3  1  DUF4131          Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6  14.1   3.1e-22   1.9e-18       5     112 ..      19     127 ..      16     128 .. 0.92

  Alignments for each domain:
  == domain 1  score: 66.6 bits;  conditional E-value: 3.1e-22
  Phage_holin_3_6   5 rrltaqlssLvrteleLakaElkeeakragsgagllgaagvlallalllllvalalala.alwlaali.vaavllvlagvlalvglkklkkakp 96 
                      +r+++ l+++v+t+l+L+ +El+ee++++++++++ g+++++a+++l++llv++++a++  + l  +i +++vll++a+++++++l+k+++ ++
       CTQ30112.1  19 QRIVTLLVEMVETRLRLVVVELEEEKANLFQLLIMTGLTLLFAAFGLMSLLVLVIWAVDaQYRLHVMIaTTVVLLLAAAIVGILTLRKARR-ST 111
                      7899******************************************************9557777777589*******************9.55 PP

  Phage_holin_3_6  97 lpertieelkedvaal 112
                      l++ t++el++d+a+l
       CTQ30112.1 112 LLRLTRKELENDRALL 127
                      7************987 PP

>> Serinc  Serine incorporator (Serinc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.1   1.1e-05     0.066     152     242 ..      24     112 ..      10     115 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.1e-05
      Serinc 152 LLvDfahswneswvekaeesesklwyaaLllvtlllyllaialvvllfvffassgCslnkffislnlilcvvvsvvsilpkvqeanprsgL 242
                 LLv+++ +    +v + ee++++l+++++++   ll+++   +  l+ v++a +     +++i+++++l++++++v il    ++  rs L
  CTQ30112.1  24 LLVEMVETRLRLVVVELEEEKANLFQLLIMTGLTLLFAAFGLMSLLVLVIWAVDAQYRLHVMIATTVVLLLAAAIVGILTL--RKARRSTL 112
                 78888888888888899998899999998888777888777777777788867777777799***************9984..34555655 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.2   0.00028       1.7       6      56 ..      57     108 ..      47     124 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00028
     DUF4131   6 alvllalllllllllllllrr...rprrrvllllllllllallgfalrapqpna 56 
                  l++ a++l+ ll+l+++      ++r +v+++ +++llla++ + + ++++++
  CTQ30112.1  57 TLLFAAFGLMSLLVLVIW--AvdaQYRLHVMIATTVVLLLAAAIVGILTLRKAR 108
                 334444444444444444..4569999999999999999998888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1403  (0.0782531); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1055.78
//
Query:       CTQ30113.1  [L=98]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-30  103.5   9.7    6.6e-30  103.2   9.7    1.1  1  YqjK      YqjK-like protein
  ------ inclusion threshold ------
      0.044   14.0   0.2      0.055   13.6   0.2    1.2  1  DUF2508   Protein of unknown function (DUF2508)


Domain annotation for each model (and alignments):
>> YqjK  YqjK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   9.7   7.3e-34   6.6e-30       1      73 []      14      86 ..      14      86 .. 1.00

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 7.3e-34
        YqjK  1 LlaqieqQRldLaqaaepwekalapvDrgwqtlrslrkhlilvsgllallgvrrPrrllrwlrrglgawstlR 73
                Ll+qi+qQRl+L+++ ++w++a+ap+Drgw+tl slr++l+++sgl+a+++vr+P+ l+rw++rglg+wst+R
  CTQ30113.1 14 LLRQIQQQRLELSACRRHWHEATAPFDRGWHTLLSLRSWLMVGSGLMAVWSVRHPHFLMRWTKRGLGLWSTWR 86
                89**********************************************************************9 PP

>> DUF2508  Protein of unknown function (DUF2508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   6.1e-06     0.055      10      38 ..       6      34 ..       1      41 [. 0.84

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.1e-06
     DUF2508 10 lkkeedeeLleeIektkeelesakslfen 38
                 +++++++Ll++I++++ el+++++  + 
  CTQ30113.1  6 ERERQKAQLLRQIQQQRLELSACRRHWHE 34
                46779******************997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 798.18
//
Query:       CTQ30114.1  [L=130]
Description: putative quinol oxidase subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-17   63.7  12.9    2.9e-17   63.0  12.9    1.3  1  DoxX      DoxX
    0.00019   21.7   5.8      0.073   13.5   0.2    2.4  2  DUF1270   Protein of unknown function (DUF1270)
    0.00072   19.2   1.0    0.00094   18.8   1.0    1.5  1  SURF4     SURF4 family
     0.0092   15.9   1.6     0.0092   15.9   1.6    1.8  2  DoxD      TQO small subunit DoxD
  ------ inclusion threshold ------
      0.014   15.4   8.6       0.02   15.0   8.5    1.3  1  DoxX_2    DoxX-like family


Domain annotation for each model (and alignments):
>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0  12.9   8.2e-21   2.9e-17       2      84 ..       9      87 ..       8      88 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 8.2e-21
        DoxX  2 llllRlllgvlfiahGlqkltgfglegtaaslaalglpppellaylaalvElvgglllllGlltRlaAlalavtllvatltvh 84
                +l++R+l+ +lfi +G++k+t  g++gt+++++a+g+  p  l+ l++l+E++ggl++l+G+ltR  Al+ a ++l +++++h
  CTQ30114.1  9 VLVARILMPILFITAGWGKIT--GYAGTQQYMEAMGV--PGALLPLTILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFH 87
                79*******************..9*************..*******************************************9 PP

>> DUF1270  Protein of unknown function (DUF1270)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.2     2e-05     0.073      18      39 ..      11      33 ..       7      38 .. 0.83
   2 !   10.2   1.4   0.00022      0.78      19      48 ..      61      89 ..      48      92 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-05
     DUF1270 18 laivlmPllyfttaWs.iaGfas 39
                +a +lmP+l+ t+ W  i+G+a 
  CTQ30114.1 11 VARILMPILFITAGWGkITGYAG 33
                5889***********55999996 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00022
     DUF1270 19 aivlmPllyfttaWsiaGfasivtfifyke 48
                a +l  +l  tta   aGf+ + +f+f+ +
  CTQ30114.1 61 A-ILFGFLTRTTALFTAGFTLLTAFLFHSN 89
                4.5889*********************865 PP

>> SURF4  SURF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.0   2.6e-07   0.00094     227     267 .]      89     130 .]       9     130 .] 0.77

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.6e-07
       SURF4 227 kelrdflkYdffqtlsviGGLLlvvatGpGelsvDek.kkky 267
                 ++   +    f ++l + GG Ll+  tGpG +s+D    kk+
  CTQ30114.1  89 NFAEGVNSLMFMKNLTIAGGYLLLAITGPGAFSIDRVlNKKW 130
                 344445556699***********************7425555 PP

>> DoxD  TQO small subunit DoxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.36   1.3e+03       4      20 ..      11      27 ..       9      38 .. 0.77
   2 !   15.9   1.6   2.6e-06    0.0092      73     147 ..      53     129 ..      36     130 .] 0.66

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.36
        DoxD  4 ilRlalgliflsagirk 20
                + R+ + ++f+ ag+ k
  CTQ30114.1 11 VARILMPILFITAGWGK 27
                56888888888888755 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2.6e-06
        DoxD  73 lvEiivGlllliGlltRlsslvafalal..gialsayWlgstcedEyqiglllva.aelvliltgsgklslDylllkk 147
                 l+E   Gl +l G+ltR ++l  +  +l   +++ + + +        +  l++a + l+l +tg g +s+D +l kk
  CTQ30114.1  53 LLEFGGGLAILFGFLTRTTALFTAGFTLltAFLFHSNFAEGVN-SLMFMKNLTIAgGYLLLAITGPGAFSIDRVLNKK 129
                 4578889**********99987665544113333455555422.33333334444044556689************99 PP

>> DoxX_2  DoxX-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   8.5   5.7e-06      0.02       2      88 ..      12      96 ..      11     116 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.7e-06
      DoxX_2  2 ltvllalffllsGvakllraeevvakfaqlgfpssfvrllGvvellgalgLllplvtaprltplAavglallmvgAiathlrrgdpk 88
                + +l+ ++f+++G  k++  +   + ++ +g+p  ++ l+ ++e+ g+l++l ++   +r+t l  +g++ll+++ ++++++ g  +
  CTQ30114.1 12 ARILMPILFITAGWGKITGYAGTQQYMEAMGVPGALLPLTILLEFGGGLAILFGF--LTRTTALFTAGFTLLTAFLFHSNFAEGVNS 96
                56788899**********************************************6..355555555666655555544445555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1130.29
//
Query:       CTQ30115.1  [L=328]
Description: S-transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-22   78.9   0.0    5.4e-22   77.9   0.0    1.6  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    9.3e-13   48.0   0.0      2e-12   46.9   0.0    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    2.4e-06   27.7   0.0    6.6e-06   26.3   0.0    1.8  1  GST_C     Glutathione S-transferase, C-terminal domain
    0.00011   22.3   0.0     0.0002   21.5   0.0    1.4  1  GST_C_3   Glutathione S-transferase, C-terminal domain
    0.00023   21.5   0.0     0.0036   17.7   0.0    2.2  1  GST_N_3   Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.067   13.0   0.0       0.13   12.1   0.0    1.5  1  GST_C_6   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   1.8e-25   5.4e-22       1      69 [.      62     158 ..      62     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 1.8e-25
                 S-HHHHHHHHHHHHCT--EEEEEE....H...-TTSHHHHH......................HHHCTTTSSSEEE-CTTE..EEESHHHHHHHHHH CS
     GST_N_2   1 aCPwahRvlialalkglediisvv....vlepkgfekseef......................prlnprgtVPvLwdkdgq..vineSseIlrylet 69 
                 aCPwahR+li+++lkgle  + v+    ++ ++g++  + f                      p +++r+tVPvLwdk++q  v neS+eI+r+++t
  CTQ30115.1  62 ACPWAHRTLIMRKLKGLEPFLPVSvvnpLMLENGWTFDDSFpeatgdtlyqhdflyqlylhadPHYTGRVTVPVLWDKKQQtiVSNESAEIIRMFNT 158
                 7****************97766652254445566665555599999999999999999999999999999********88889999**********9 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   6.7e-16     2e-12       1      54 [.     203     256 ..     203     296 .. 0.87

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 6.7e-16
                 HHHHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS- CS
     GST_C_2   1 eaaveraleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgf 54 
                 ++a+++a+++++ +l+ le++L+++++l G+q+t aDi+l+++lvr++ ++  +
  CTQ30115.1 203 QQAYDEAVDAVFTSLERLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTH 256
                 689***********************************************9765 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.2e-09   6.6e-06      18      91 ..     200     279 ..     170     296 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.2e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHH...HHHHHTTTTT...TTTSHHHHHHHHHHHT CS
       GST_C  18 ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpiln...wlqrlglafg...qekfpnlkawlerima 91 
                 +++++++dea ++v+ +l++le  l ++ yl G++lt ADi l + l     ++ + ++++     ++ nl+ +l  i++
  CTQ30115.1 200 ATSQQAYDEAVDAVFTSLERLEQILGQHRYLTGNQLTEADIRLWTTLVrfdPVYVTHFKCDkrrISDYLNLYGFLRDIYQ 279
                 78999************************************777666534433334444445566777777777766665 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   6.8e-08    0.0002      19      94 ..     200     285 ..     180     288 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 6.8e-08
                 HHHHHHHHHHHHCHHHHHHHHHHC.HGTSSSSTTS--HHHHHHHHHHHHHHHH.....TCC....CC-HHHHHHHHHHHTSHHHHH CS
     GST_C_3  19 ekkkefleerlpkflkyfekvlkk.kgggylvgdklTyADlalfqvldgleea.....eal....kkfpklkalyervearpkika 94 
                 + +++ ++e +  +++ +e++ +   +  yl g++lT AD+ l++ l  +  +     +++    +++ +l  +   + + p+i++
  CTQ30115.1 200 ATSQQAYDEAVDAVFTSLERLEQIlGQHRYLTGNQLTEADIRLWTTLVRFDPVyvthfKCDkrriSDYLNLYGFLRDIYQMPGIAE 285
                 55666667777777766666666424777****************99999888888883333456888889999999999999986 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.2e-06    0.0036       1      73 [.      57     162 ..      57     166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.2e-06
                 EES-TTSHHHHHHHHHHHHHT-....-EEEE---..........................TTTTHHHHHHH-TT--SSEEETTS-...EEESHHHHHHH CS
     GST_N_3   1 LygfpaSpyarrvrlaLnekgl....pvevvevt..........................pgehdeellaknplgkvPvLeddge...altdSlaIidy 66 
                 Ly + a+p+a r  ++ ++kgl    pv vv+                            ++    + ++++++ +vPvL d  +   +  +S++Ii+ 
  CTQ30115.1  57 LYVSLACPWAHRTLIMRKLKGLepflPVSVVNPLmlengwtfddsfpeatgdtlyqhdflYQLYLHADPHYTGRVTVPVLWDKKQqtiVSNESAEIIRM 155
                 99********************63333555444378899999999999999999887777666677777888********77633346667*******9 PP

                 HHHHH-G CS
     GST_N_3  67 Leelypg 73 
                 + ++++g
  CTQ30115.1 156 FNTAFDG 162
                 9998875 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.4e-05      0.13       5      60 ..     217     273 ..     214     277 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.4e-05
     GST_C_6   5 leaLselLgdkkyFfGdkPtslDAlvFGhlaqi...lytplespelrellkeypNLvay 60 
                 le L ++Lg++ y+ G++ t++D  ++  l+ +   + t ++    ++ +++y NL  +
  CTQ30115.1 217 LERLEQILGQHRYLTGNQLTEADIRLWTTLVRFdpvYVTHFKCD--KRRISDYLNLYGF 273
                 78899***********99******99999876511133333433..6666667776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.18s 00:00:00.63 Elapsed: 00:00:00.33
# Mc/sec: 2934.10
//
Query:       CTQ30116.1  [L=122]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-34  118.6   2.3    1.6e-34  118.5   2.3    1.0  1  DUF805    Protein of unknown function (DUF805)


Domain annotation for each model (and alignments):
>> DUF805  Protein of unknown function (DUF805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   2.3     9e-39   1.6e-34       1     105 []      11     117 ..      11     117 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.5 bits;  conditional E-value: 9e-39
      DUF805   1 yfdfkGRasRsefwwfvlfllllvivlallaavlaa..aavasalsvvlallllvpslavtvRRlHDtgrsgwllllllvplialllllvllllpgtpg 97 
                 y+ f GRa+R+e+w+f+l++l+l+ vl+++  +l    a   ++l++++++l+++p +av++RRlHDt+rs+w+lllll+p+i++l++l++ +++gt+g
  CTQ30116.1  11 YIGFGGRARRKEYWMFILVNLILTGVLSIIDKMLGWqrAGGEGILTTIYGVLVFLPWWAVQFRRLHDTDRSAWWLLLLLIPVIGWLVILIFNCQRGTEG 109
                 6789******************************989988999******************************************************** PP

      DUF805  98 enryGpdp 105
                 +nr+Gpdp
  CTQ30116.1 110 NNRFGPDP 117
                 ******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 1099.64
//
Query:       CTQ30117.1  [L=298]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-17   64.0   0.4    1.8e-17   63.4   0.4    1.3  1  LysR_substrate  LysR substrate binding domain
    1.5e-16   60.0   0.1    5.4e-16   58.3   0.1    2.0  2  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0062   16.4   0.6      0.026   14.4   0.1    2.1  2  MarR_2          MarR family
  ------ inclusion threshold ------
      0.021   14.9   0.7      0.094   12.8   0.1    2.2  2  HTH_20          Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.4     4e-21   1.8e-17       7     192 ..      98     280 ..      92     293 .. 0.79

  Alignments for each domain:
  == domain 1  score: 63.4 bits;  conditional E-value: 4e-21
                     EEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGGSSSECGG CS
  LysR_substrate   7 rLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLargepvsle 99 
                     +L+i +   + +  l pl++++ a   + +l++ ++  +   ++l++g++D++++ +    ++s++ +r+L++   v va+pdhp++++ p +l+
      CTQ30117.1  98 HLTIVTEALVPTPDLFPLIEKL-ATKSNTQLSIITEVLAGAWERLEQGRADIVVAPDMHfrSSSEINSRKLYSVLNVYVAAPDHPIHQE-PEPLS 190
                     5556666666666666666665.6667889999999999****************9999**************************9996.44455 PP

                     GGCTSEEEEESTTST.HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEETTCC CS
  LysR_substrate 100 dLadeplilleegsg.lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrkgre 192
                     ++ + +   +         + + +l  + l+ +++l+v+++e  +++ +aGlG+a +p  +v++++a+grl+ ++ pe++ + ++ +++r+++ 
      CTQ30117.1 191 EVTRVKYRGVA---VaDTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPLVEKDIAEGRLR-VVSPEYTNEIDIIMAWRRDSM 280
                     55443333332...223333333345577777****************************************.999998999*********984 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.1   1.2e-19   5.4e-16       1      60 []       9      68 ..       9      68 .. 0.97
   2 ?   -1.5   0.0      0.55   2.5e+03      18      32 ..      79      93 ..      70      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 1.2e-19
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l++lr+ +a+ + gsf++AA+eLg  ++a+s  +++LEeel+v Lf+R+g++++ T  G+
  CTQ30117.1  9 LEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGR 68
                689*****************************************************9886 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.55
                HHHHHHTS-HHHHHH CS
       HTH_1 18 rAAeeLglsqpavsr 32
                +AA++L +   a+sr
  CTQ30117.1 79 EAADKLTTDAEALSR 93
                699999999999887 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   5.8e-06     0.026       2      47 ..       6      47 ..       5      48 .. 0.95
   2 ?   -0.6   0.0      0.29   1.3e+03       8      30 ..     209     231 ..     205     233 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.8e-06
                T--HHHHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2  2 gltpaqarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLva 47
                +lt+  +rv+ a+ rr+    + ++ a++lg  +sa+s++ ++L++
  CTQ30117.1  6 ALTLEALRVMDAIDRRG----SFAAAADELGRVPSALSYTMQKLEE 47
                699*************9....9**********************97 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.29
                 HHHHHH.HHCTTTSEEEHHHHHHH CS
      MarR_2   8 arvLaa.Lgrrpgrdltvgelarr 30 
                 + vL + L +  +r ltv+ ++++
  CTQ30117.1 209 RPVLTVqLLDKQPR-LTVSTIEDK 231
                 55555555555554.999999875 PP

>> HTH_20  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   2.1e-05     0.094      13      54 ..      12      52 ..       9      59 .. 0.83
   2 ?   -0.6   0.0      0.31   1.4e+03      17      42 ..      68      92 ..      66      96 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.1e-05
                HHHHHHHSTCTTB-HHHHHHHHTS-HHHHHHHHHHHHH.CTTE CS
      HTH_20 13 rrilraLaraegltaselaerldlskntlsyHLrvLee.agLv 54
                +r+++a+  ++  ++++ a++l+  ++ lsy +++Lee  + v
  CTQ30117.1 12 LRVMDAI--DRRGSFAAAADELGRVPSALSYTMQKLEEeLDVV 52
                6788888..8888999999999999999*********977766 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.31
                HHHSTCTTB-HHHHHHHHTS-HHHHH CS
      HTH_20 17 raLaraegltaselaerldlskntls 42
                r+L  ++g+ + e a+ l ++   ls
  CTQ30117.1 68 RML-LERGRVLLEAADKLTTDAEALS 92
                677.7999999999999955444465 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2263.61
//
Query:       CTQ30118.1  [L=233]
Description: putative pirin-related protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-24   84.5   0.3    2.1e-23   82.3   0.1    1.9  2  Pirin_C_2  Quercetinase C-terminal cupin domain
    6.8e-23   80.7   0.0    1.3e-22   79.9   0.0    1.4  1  Pirin      Pirin
     0.0004   20.0   0.0     0.0016   18.1   0.0    1.9  2  Cupin_2    Cupin domain
  ------ inclusion threshold ------
      0.033   14.5   0.1        5.4    7.4   0.0    2.2  2  Pirin_C    Pirin C-terminal cupin domain
      0.047   13.4   0.0       0.98    9.2   0.0    2.2  2  Cupin_3    Protein of unknown function (DUF861)
      0.087   12.6   0.0       0.16   11.7   0.0    1.4  1  EutQ       Ethanolamine utilisation protein EutQ


Domain annotation for each model (and alignments):
>> Pirin_C_2  Quercetinase C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.35   1.1e+03      45      73 ..      68     101 ..      43     109 .. 0.68
   2 !   82.3   0.1     7e-27   2.1e-23       1      86 []     142     231 ..     142     231 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.35
   Pirin_C_2  45 vieGevev.....ngeslaagDGlaiedesslsl 73 
                 ++eGe+e      n ++ +ag +l i+ +  +s 
  CTQ30118.1  68 ILEGEAEYrdsdgNHVQAKAGEALLIATQPGVSY 101
                 6677777733322346777999998888776665 PP

  == domain 2  score: 82.3 bits;  conditional E-value: 7e-27
   Pirin_C_2   1 lvaSpdgrdgslkinQdarlyaakldegesleyelaagrkaYlqvieGevev.....ngeslaagDGlaiedesslsltaeedaevLlfDl 86 
                 l+aSp+g d+sl+++Q+a++y++ l++ge+++++l+   +aYlq i+G+v++     +++ l++gDG+ i+de++++l a+++ ++Ll+Dl
  CTQ30118.1 142 LLASPEGGDNSLQLRQQAWVYHIALEKGEQINVQLHGP-RAYLQSIHGSVHAvaqeqQKQALTCGDGAFIRDEANITLVADTPLRALLIDL 231
                 89**********************************77.8**********9966666678888***************************8 PP

>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   4.2e-26   1.3e-22       3     108 .]       5     119 ..       3     119 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 4.2e-26
                 EECCGTCC...TTCCEECTCEECCEEESS.S.ETT.....EEEE..T-EEEEEEEBSEEEEEEEECSEEEEEETTS-EEEEETT-EEEEE-TT-EEEEE CS
       Pirin   3 rvrralgk..aaelqsvdpFlfldefdpaelevge.....edvi..gagfpphphrgletvtylleGevehrDslGnkgvirpGdvqwmtAgsGivhsE 92 
                 r+++++g+    +lq++ +F+f ++fdp+ l +++     ++v+  ga+f+ +++ ++++++++leGe e+rDs Gn+ + ++G++ +++ + G+ +sE
  CTQ30118.1   5 RTAKQCGQadFGWLQARYTFSFGHYFDPKLLGFASlrvlnQEVLapGASFQARTYPKVDILNLILEGEAEYRDSDGNHVQAKAGEALLIATQPGVSYSE 103
                 677888887789*********************999999888889****************************************************** PP

                 EE-SSSS-EEEEEEEE CS
       Pirin  93 mneeeeesleglqlWv 108
                 +n ++e+sl+ +qlW+
  CTQ30118.1 104 HNLSKEQSLTRMQLWL 119
                 ***************6 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.4e-07    0.0016       4      51 ..      47      95 ..      44     113 .. 0.83
   2 ?   -0.8   0.0      0.43   1.3e+03       5      50 ..     166     211 ..     162     229 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.4e-07
                EEETTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-T CS
     Cupin_2  4 elppGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpa 51
                +l+pG+s+++ + p  d +  +leGe+e++  dg+ v+ +aG+++++ +
  CTQ30118.1 47 VLAPGASFQARTYPKVDILNLILEGEAEYRdSDGNHVQAKAGEALLIAT 95
                7899**99999989999**************************998754 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.43
                 EETTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE- CS
     Cupin_2   5 lppGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfp 50 
                 l++Ge++    H    +++  + G ++    + +++ l+ Gd +++ 
  CTQ30118.1 166 LEKGEQINVQLHGPR-AYLQSIHGSVHAVaQEQQKQALTCGDGAFIR 211
                 556666666666555.5666666666666556667777777776665 PP

>> Pirin_C  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.01        31       6      42 ..      48      85 ..      45     113 .. 0.79
   2 ?    7.4   0.0    0.0018       5.4       2      68 ..     162     229 ..     161     230 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.01
                E-TT-EEEEE--TT-EEEEEEEES-EEESSTT.EEE-T CS
     Pirin_C  6 leagaelelplpegleaavyvleGelevgger.seiee 42
                l++ga+++ ++ ++++ + ++leGe+e  +++ +++++
  CTQ30118.1 48 LAPGASFQARTYPKVDILNLILEGEAEYRDSDgNHVQA 85
                789***********************999988633333 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0018
                 EEEEE-TT-EEEEE--TT-EEEEEEEES-EEESSTT...EEE-TTEEEEE-SSSEEEEE--SS-EEEEEE CS
     Pirin_C   2 ldltleagaelelplpegleaavyvleGelevgger...seieeeqlavlgdgdslvvkaeekgarvlLl 68 
                 +++ le+g++++++  +g +a +  ++G+++   ++   ++++ ++ a ++d+ ++++ a+ +++r lL+
  CTQ30118.1 162 YHIALEKGEQINVQ-LHGPRAYLQSIHGSVHAVAQEqqkQALTCGDGAFIRDEANITLVAD-TPLRALLI 229
                 7899********99.8999**********9766555466788888888888********99.9***9997 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00033      0.98      28      55 ..      65      92 ..      41      97 .. 0.81
   2 ?    1.9   0.0     0.061   1.8e+02      32      60 ..     186     214 ..     182     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00033
                EEEEEECEEEEEETTTEEEEEETTEEEE CS
     Cupin_3 28 fcyileGevkvtpeggetvelraGDlvv 55
                +  ileGe ++++ +g+ v+ +aG ++ 
  CTQ30118.1 65 LNLILEGEAEYRDSDGNHVQAKAGEALL 92
                448*********************8875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.061
                 EECEEEEEETTTEEEEEETTEEEEE-TTE CS
     Cupin_3  32 leGevkvtpeggetvelraGDlvvlpkgl 60 
                 ++G v+ ++++ ++ +l  GD ++++   
  CTQ30118.1 186 IHGSVHAVAQEQQKQALTCGDGAFIRDEA 214
                 689******99999*******99998765 PP

>> EutQ  Ethanolamine utilisation protein EutQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.4e-05      0.16      96     137 ..      63     105 ..      54     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.4e-05
        EutQ  96 deidyvieGrldvl.idGrkvvaeaGdviliPkgskiefsvtd 137
                 d +++++eG+ + +  dG++v a+aG+ +li  +  + +s  +
  CTQ30118.1  63 DILNLILEGEAEYRdSDGNHVQAKAGEALLIATQPGVSYSEHN 105
                 66789*******98469**************998888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1716.54
//
Query:       CTQ30119.1  [L=55]
Description: hypothetical protein CH1034_300227 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 443.21
//
Query:       CTQ30120.1  [L=136]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-06   26.3   0.2    1.4e-05   25.7   0.2    1.3  1  LTXXQ           LTXXQ motif family protein
     0.0061   16.5   0.3     0.0075   16.2   0.3    1.2  1  DUF4509         Domain of unknown function (DUF4509)
     0.0074   16.5   0.1     0.0096   16.1   0.1    1.2  1  Metal_resist    Heavy-metal resistance
  ------ inclusion threshold ------
      0.043   14.4   1.0       0.12   13.0   0.3    1.9  2  Vac14_Fab1_bd   Vacuolar 14 Fab1-binding region
      0.051   13.4   0.5        1.3    8.9   0.0    2.7  2  RNA_pol_Rpb5_C  RNA polymerase Rpb5, C-terminal domain
        1.2    9.2   6.7       0.76    9.8   1.8    2.7  3  DUF2680         Protein of unknown function (DUF2680)


Domain annotation for each model (and alignments):
>> LTXXQ  LTXXQ motif family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.2   4.7e-09   1.4e-05       6     102 ..      34     128 ..      29     130 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 4.7e-09
                 XXSTTTT----HHHHHHHHHHHHHHHHHS---..-HHHHHHHHHHHTSSS--HHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHH CS
       LTXXQ   6 iaklkaeLkLtdaQkaalkalaeaaraeakplkakkeemramrkkvlaanfdetaperlarmeamlearleavkkraealkqfyavLtpEQkaklda 102
                 ++ + + LkLt  Q a++k+l+++ +++ ++  +++ ++ a+ + + + + de+a++ +   +a  +  ++ +  r +   ++ +vLtpEQ+ + ++
  CTQ30120.1  34 QDPIVQHLKLTNDQVAKIKSLHQQLESNVQQISQQEIKDGALINVIDSGKWDEKAVNDQL--AAFSKIDQQVRYYRVKYYFEVNKVLTPEQRTQVKK 128
                 6678899*************************66666666666655999*********99..9999999999999999**************99876 PP

>> DUF4509  Domain of unknown function (DUF4509)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.3   2.5e-06    0.0075     101     175 ..      21      97 ..       1     103 [. 0.72

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.5e-06
     DUF4509 101 slkalesnkpkskaaeleas.veevdkvkhlqwLngklrlqlkslsslqkeqcallhkihsytqgakidq.nlkhls 175
                 ++ a+ + +p++ ++ + ++ +   d+v +++ L+ +l+ + +++s+++ +  al++ i+s ++++k ++ +l  +s
  CTQ30120.1  21 AQAADVKAAPAPAQDPIVQHlKLTNDQVAKIKSLHQQLESNVQQISQQEIKDGALINVIDSGKWDEKAVNdQLAAFS 97 
                 33344444444444444444466799***************************************999987777776 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.2e-06    0.0096      22     126 .]      28     125 ..       8     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.2e-06
                   XXXXXTTHHBH.HHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
  Metal_resist  22 ggpppggpargraellraalgLpaeqraelraalrdharelralrrelraarrelaallaaepfDaaaieaalaeiraaqaalraqieeallefaat 118
                   + p p+      ++     l+L+ +q a+ + ++++   +++   +  + +  +l +++   + D++a++++la+ ++ ++++r  + +  +e+ + 
    CTQ30120.1  28 AAPAPA------QDPIVQHLKLTNDQVAKIKSLHQQLESNVQQISQ-QEIKDGALINVIDSGKWDEKAVNDQLAAFSKIDQQVRYYRVKYYFEVNKV 117
                   333333......5555667899999999999999999999998887.79999********************************************* PP

                   T-GGGHH. CS
  Metal_resist 119 lspeqraa 126
                   l+peqr++
    CTQ30120.1 118 LTPEQRTQ 125
                   ******86 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.63   1.9e+03      75      93 ..      42      60 ..      35      77 .. 0.65
   2 ?   13.0   0.3     4e-05      0.12      26      59 ..      86     119 ..      74     135 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.63
  Vac14_Fab1_bd 75 klvaDsdesvksgaelldr 93
                   kl+ D+ +++ks  ++l+ 
     CTQ30120.1 42 KLTNDQVAKIKSLHQQLES 60
                   5666666666665555554 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4e-05
  Vac14_Fab1_bd  26 eeivkpvlkcfsDkdsrvRyyacEslyniakvak 59 
                    e+ v+  l++fs  d++vRyy + + + + kv+ 
     CTQ30120.1  86 EKAVNDQLAAFSKIDQQVRYYRVKYYFEVNKVLT 119
                    567788899**********************975 PP

>> RNA_pol_Rpb5_C  RNA polymerase Rpb5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00044       1.3      40      58 ..      34      52 ..      32      63 .. 0.87
   2 ?    2.1   0.1     0.058   1.7e+02      31      50 ..      90     109 ..      65     125 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00044
                    TSHHHHCCT--TTSEEEEE CS
  RNA_pol_Rpb5_C 40 sDpvarylglkkGdvvkIt 58
                    +Dp++++l+l++ +v kI 
      CTQ30120.1 34 QDPIVQHLKLTNDQVAKIK 52
                    8*****************7 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.058
                     TTCSS-EETTSHHHHCCT-- CS
  RNA_pol_Rpb5_C  31 eeqLPkisksDpvarylglk 50 
                     ++qL   sk D  +ry+++k
      CTQ30120.1  90 NDQLAAFSKIDQQVRYYRVK 109
                     68899999999999999876 PP

>> DUF2680  Protein of unknown function (DUF2680)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.8   0.00025      0.76       1      21 [.      43      63 ..      43      75 .. 0.81
   2 ?   -1.8   0.0       1.1   3.4e+03       5      16 ..      92     103 ..      90     109 .. 0.56
   3 ?    0.8   0.0      0.17   5.2e+02       1      43 [.     118     128 ..     117     135 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00025
     DUF2680  1 LTdeQkkeleaLyqqiaelrK 21
                LT++Q++++++L+qq  +  +
  CTQ30120.1 43 LTNDQVAKIKSLHQQLESNVQ 63
                8**************866555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
     DUF2680   5 QkkeleaLyqqi 16 
                 Q +  +++ qq+
  CTQ30120.1  92 QLAAFSKIDQQV 103
                 555555555554 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.17
     DUF2680   1 LTdeQkkeleaLyqqiaelrKqivdKyVeaGllTkeqgekikk 43 
                 LT+eQ ++++                                k
  CTQ30120.1 118 LTPEQRTQVK--------------------------------K 128
                 5566655554................................4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1417  (0.079034); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1050.70
//
Query:       CTQ30121.1  [L=154]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-36  124.3   0.0    3.7e-36  124.2   0.0    1.0  1  tRNA_anti-like  tRNA_anti-like
  ------ inclusion threshold ------
      0.087   12.9   0.0       0.12   12.5   0.0    1.2  1  DUF4839         Domain of unknown function (DUF4839)


Domain annotation for each model (and alignments):
>> tRNA_anti-like  tRNA_anti-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   0.0   4.1e-40   3.7e-36       1     160 [.       1     151 [.       1     152 [. 0.94

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 4.1e-40
                     XX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---HHHHHTS-..............EEEHHHHHHHHHH-HHHHHHHHTT-EEEEEEEE CS
  tRNA_anti-like   1 MkamlkkilviilivilllfvialvaqaaesardkekaekedadatlaeakakpeavaekasqisArdLlaeYdkNevkadkkYkGkiieVeGvv 95 
                     M+  l+++++++++vi+ll+++ l+++a++sa+dk +++++da a+++              ++s++++l++++ N++ka+++Y+Gk+++V+Gv+
      CTQ30121.1   1 ML--LRFRVLPLVFVISLLSGCGLASKAFYSAGDKLFQPGDDAVASMQ--------------TYSVAQFLQPFTLNPAKASSDYLGKWVKVRGVI 79 
                     66..899****************************************9..............********************************* PP

                     EEE.EE..-STT-E.EEEEE-TT-S-S--EEEEEEG.GHHHHHH--TTSEEEEEEE-----..SS-EEEEEE CS
  tRNA_anti-like  96 sdi.kk..ieassv.vvlardddgltnVrclledea.teasaakiskGqkvtivGqvngvs..idnvllrdc 160
                     +di +k  i +s++ +v++rd++++t++r+++++ + ++a+++++s+G+++tivGqv++v+  ++++l++++
      CTQ30121.1  80 VDIrRKsgIAGSYYfIVTMRDEQNKTDKRLTFNFGShNSADVEALSNGSVATIVGQVHQVQdsTIPTLQNPK 151
                     ***866755666669*********************9***********************988888888875 PP

>> DUF4839  Domain of unknown function (DUF4839)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.3e-05      0.12      25      91 ..      66     132 ..      50     144 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
     DUF4839  25 kkykGrtieFdGsiaalvnhgdkktrydillgagdydeetakGPaFkfedvnvsdlnltgeeipdtl 91 
                  +y G+ ++  G i+ +  +      y +++ ++d +++t k  +F f   n +d++  +++ ++t+
  CTQ30121.1  66 SDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSNGSVATI 132
                 6899****************************************************99998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.29s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1118.52
//
Query:       CTQ30122.1  [L=74]
Description: hypothetical protein CH1034_300230 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        5.2    6.1   5.3        3.4    6.7   0.8    1.9  2  Arb1      Argonaute siRNA chaperone (ARC) complex subunit Arb


Domain annotation for each model (and alignments):
>> Arb1  Argonaute siRNA chaperone (ARC) complex subunit Arb1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.4    0.0045        80      41      66 ..       6      30 ..       2      43 .. 0.74
   2 ?    6.7   0.8   0.00019       3.4      42      58 ..      46      62 ..      38      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.0045
        Arb1 41 vdRieeaIqryrarRrldserrniFn 66
                v+R++ + +ry +r rl  +  ++F 
  CTQ30122.1  6 VTRMNGCPRRYTKRTRLIGQF-HLFM 30
                78**************96544.3444 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00019
        Arb1 42 dRieeaIqryrarRrld 58
                dR++++ +ry +rRrl 
  CTQ30122.1 46 DRMNDCPRRYTKRRRLL 62
                8**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       178  (0.00992805); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 570.67
//
Query:       CTQ30123.1  [L=64]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 483.98
//
Query:       CTQ30124.1  [L=88]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       224  (0.0124937); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 701.39
//
Query:       CTQ30125.1  [L=381]
Description: glycerate kinase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.5e-149  498.0   6.6   1.6e-149  497.9   6.6    1.0  1  Gly_kinase  Glycerate kinase family


Domain annotation for each model (and alignments):
>> Gly_kinase  Glycerate kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  497.9   6.6  9.1e-154  1.6e-149       1     365 [.       3     373 ..       3     374 .. 0.99

  Alignments for each domain:
  == domain 1  score: 497.9 bits;  conditional E-value: 9.1e-154
  Gly_kinase   1 iviapdsFkgslsaaevaeaiaegikkaapeaevvklplaDGGeGtvealvaalggelvevevtgplgrpveakyglledektAviEmAeasGlklvpe 99 
                 iviapds+k+slsa+eva+ai++g++++ p+a++v+lp+aDGGeGtvea++aa++g+ + + vtgplg++v+a +g+++d+ tA+iEmA+asGl lvp+
  CTQ30125.1   3 IVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSLPVADGGEGTVEAMIAATQGKEHFAWVTGPLGERVKACWGMSGDGVTAFIEMAAASGLGLVPP 101
                 8********************************************************9999************************************** PP

  Gly_kinase 100 eernplktttyGvGelikaaldkgarkiiigiGGSatnDgGaGmlqaLGvrfldadgkelepggaaLaklasidlskldprlkdveitvacDvtnpLlG 198
                 ++rnpl+tt++G+Geli++al++ga++iiigiGGSatnDgGaGm+qaLG+r++da+g+e+ +gg++L++l++idls++dprl+d  i vacDvtnpL+G
  CTQ30125.1 102 DKRNPLITTSRGTGELILQALEHGAERIIIGIGGSATNDGGAGMMQALGARLCDAEGQEIGHGGGSLSRLSRIDLSAIDPRLRDRMIHVACDVTNPLVG 200
                 *************************************************************************************************** PP

  Gly_kinase 199 eeGaaavFgpQKGatpeqveeldaalehlaevlkkdlg......pGaGAAGGlgaallaflgaelksGielvlelvgleeklkeadlviTGEGrlDsqt 291
                 e+Ga+++FgpQKGat++++ eld++l+h+a+v+k++l+      pGaGAAGG+gaal+afl+ael+sGie+v+e+++lee+++++ lv+TGEGrlDsq+
  CTQ30125.1 201 ERGASRIFGPQKGATEAMIVELDRNLAHYADVIKTSLQvdvksiPGAGAAGGMGAALMAFLNAELRSGIEIVTEALKLEEQIHDCSLVVTGEGRLDSQS 299
                 ***********************************776667899******************************************************* PP

  Gly_kinase 292 lsGKvpvgvaklakkagvpvialaGsveedaeeleeagidavfsildgpesleealeeaaelleeaaeqvarll 365
                 ++GKvpvgva++akk+ +pvi +aGs+++d   ++++gidavfs+l+++++leea++ a +++ +a++++a++l
  CTQ30125.1 300 VHGKVPVGVARVAKKYRKPVIGIAGSLTHDVGVVHQHGIDAVFSVLTSVSTLEEAFRGAFDNIYRASRNIAATL 373
                 **********************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 3147.47
//
Query:       CTQ30126.1  [L=296]
Description: tartronate semialdehyde reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-51  174.5   1.6    2.8e-51  173.8   1.6    1.3  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    5.9e-38  129.8   2.2    5.9e-38  129.8   2.2    1.5  2  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
    3.9e-09   37.0   1.3    5.7e-08   33.2   0.2    2.4  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    2.8e-06   26.8   0.1    9.1e-06   25.1   0.1    1.8  2  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    0.00016   21.6   0.3    0.00043   20.2   0.1    1.8  2  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
  ------ inclusion threshold ------
       0.01   15.4   0.2      0.025   14.2   0.1    1.7  2  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
      0.043   14.1   0.0        0.1   12.9   0.0    1.6  1  AlaDh_PNT_N     Alanine dehydrogenase/PNT, N-terminal domain
      0.043   13.9   0.8       0.11   12.5   0.1    2.0  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
      0.053   13.8   0.0       0.18   12.1   0.0    1.9  1  TrkA_N          TrkA-N domain
       0.13   12.5   0.2       0.33   11.2   0.2    1.8  1  UDPG_MGDP_dh    UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   1.6   1.5e-54   2.8e-51       1     158 []       4     163 ..       4     163 .. 0.98

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 1.5e-54
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS...HCCC--TT-EEEE-S--- CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg...llealkkgdilidgstss 93 
                    k+gfiGlG+MG++m +nllkagy+++v +r++e++ +++a+ga++a+++++++++++v+itm++++++v+ev  g   ++e +k+g+++id+s+++
     CTQ30126.1   4 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETATTPKAIAEQCEVIITMLPNSPHVKEVALGengIIEGAKPGTVVIDMSSIA 99 
                    69************************************************************************99******************** PP

                    HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEEEEEEE-E CS
  NAD_binding_2  94 pedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaigakvthviG 158
                    p ++re++++lk+kg+++ldaPVSGGe +A  GtLs+mvGG+++ f++  ++++a++ +v+h+ G
     CTQ30126.1 100 PLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT-G 163
                    **********************************************************99965.5 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       7.1   1.3e+04      35      46 ..      35      46 ..      32      57 .. 0.67
   2 !  129.8   2.2   3.3e-41   5.9e-38       1     119 [.     166     283 ..     166     286 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7.1
  NAD_binding_11 35 pekvlevinass 46
                    pe++ +vi a++
      CTQ30126.1 35 PEAIADVIAAGA 46
                    677788887775 PP

  == domain 2  score: 129.8 bits;  conditional E-value: 3.3e-41
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaGldpekvlevinassgrsnalenklpqrvlsrdfdpgFaldlmlKDlglalelareagaplpll 95 
                     GaG+++Kl+n++++a+n+aa+sEal+la+kaG++p+ v+++i++++++s++l+ k p +v++r+f+pgF++dl++KDl+ al++ + +ga+lpl+
      CTQ30126.1 166 GAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-MVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLT 259
                     9********************************************************.9************************************ PP

  NAD_binding_11  96 alaeqlyaaaaaegggdaDhsaiv 119
                     a+++++++a++a+g g aDhsa++
      CTQ30126.1 260 AAVMEMMQALRADGLGTADHSALA 283
                     *********************987 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.2   3.2e-11   5.7e-08       1      94 [.       4      95 ..       4      97 .. 0.81
   2 ?    2.0   0.0      0.18   3.2e+02      56      96 ..     181     221 ..     167     222 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 3.2e-11
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S-H.HHHHHHHHHC...GHHHHTTSEEEEE CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvtavdneeaaeeadvvvlavkp.edveevlsel...akdalkgklvisv 94
                   k+g+iG G mg+ + ++ll+ag   +++vv  +rnpe ++   ++   ++t+   +  ae+++v++  ++   +v+ev+       + a+ g++vi++
     CTQ30126.1  4 KVGFIGLGIMGKPMSKNLLKAG---YSLVVS-DRNPEAIADVIAAGAETATT--PKAIAEQCEVIITMLPNsPHVKEVALGEngiIEGAKPGTVVIDM 95
                   79********************...****66.*****999998886655555..899999******99985246777764444557888888888887 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.18
                    HHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEEEESS CS
  F420_oxidored  56 eeaaeeadvvvlavkpedveevlselakdalkgklvisvla 96 
                       a+ ++ + la k  + ++++ ++ +  l+g++v+++ a
     CTQ30126.1 181 LNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKA 221
                    44566788889999999999999999999999999999866 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   5.1e-09   9.1e-06      38     158 ..       4     127 ..       2     137 .. 0.87
   2 ?   -2.4   0.0       1.5   2.6e+03      82     110 ..     239     267 ..     226     270 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 5.1e-09
                   EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC.EECSHHHHHHH-SEEEE-S--STTTTTSB..SHHHHHCSTTTEEEEESS-GGG CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv.elvsleellaesDivslhlpltpetrhli..naeelakmkkgailiNtaRGgl 131
                   +vG iGlG +G+ + k l + g  +++ dr++++ +++ + g+ + ++ +++ +++++++ +lp +p+ +++   ++  ++  k+g ++i ++  + 
    CTQ30126.1   4 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAeTATTPKAIAEQCEVIITMLPNSPHVKEVAlgENGIIEGAKPGTVVIDMSSIAP 100
                   79*******************************999888889945669999*****************9986522556799*************999 PP

                   B-HHHHHHHHHTTSCCEEEES--SSSS CS
  2-Hacid_dh_C 132 vdeeaLleaLksgkiagaalDvfeeep 158
                   +  + + eaLk++ i +    v   ep
    CTQ30126.1 101 LASREISEALKAKGIDMLDAPVSGGEP 127
                   99********99999876666665555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.5
                   ECSHHHHHHH-SEEEE-S--STTTTTSBS CS
  2-Hacid_dh_C  82 lvsleellaesDivslhlpltpetrhlin 110
                     +l ++l +s  v   lplt++  ++++
    CTQ30126.1 239 IKDLANALDTSHGVGAQLPLTAAVMEMMQ 267
                   55777777788888888888877776665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   2.4e-07   0.00043       1      84 [.       4      84 ..       4      89 .. 0.75
   2 ?   -1.8   0.0       1.4   2.5e+03     159     179 ..     144     164 ..     135     195 .. 0.55

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.4e-07
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHH.C-SEEEE CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeav.dadlviE 84
                kv+ iG G+mG+ + + +++ag++ v+ d+++ea++++ ++ +++   +   +++ +e++e +++ +  + +++e++ + + +iE
  CTQ30126.1  4 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAET---ATTPKAI-AEQCEVIITMLPNSPHVKEVAlGENGIIE 84
                699********************************9988877653...3233333.36666666666666666666666666665 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHTT-EEEEECS CS
     3HCDH_N 159 tvatvvelakkigktpvvvkd 179
                 ++++ ++l+k++   +v++ d
  CTQ30126.1 144 IFDKYYDLMKAMAGSVVHTGD 164
                 444444444444444443333 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.4e-05     0.025       6      73 ..       4      71 ..       2      92 .. 0.83
   2 ?   -3.0   0.0       2.6   4.7e+03      29      54 ..     176     203 ..     162     212 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.4e-05
                -EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEH.HHHHHT-SEEEE-S-HHHH CS
        IlvN  6 kiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltv.aeavkkadvvmiliPDelq 73
                k+  iG G  G+  ++nl  +g  +vv+ r+ +  ++   ++g e++t+ + ++++ +v+++++P++ +
  CTQ30126.1  4 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE-AIADVIAAGAETATTpKAIAEQCEVIITMLPNSPH 71
                7999************************99999.56666666666665516667899********8754 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.6
                 -EEEEE-..TT-HHHHHHHHTT-EEEEH CS
        IlvN  29 dvvvglr..egsksvkkAkeegfevltv 54 
                 +v+v+l+  + s+ ++ A+++g++   v
  CTQ30126.1 176 QVIVALNiaAMSEALTLATKAGVNPDLV 203
                 4555544113344556666666665555 PP

>> AlaDh_PNT_N  Alanine dehydrogenase/PNT, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.8e-05       0.1      21     113 ..      19     119 ..      17     122 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.8e-05
                  HHHHHTT-EEEEETTTTGGGTC-HHHHHHTTEEEESCHHHHCTTSSEEEESS--...........CHCGGGS-TTCEEEEE--GG..CHHHHHHHHHH CS
  AlaDh_PNT_N  21 kkLvkaGhevlVesgaGegagfsdeeYeeaGaeivesaeevlaeadlilkVkeps..........eeelellkegqtlisflhla..anpellealae 106
                  k+L+kaG++++V   +    ++  ++  +aGae +++ +++++++++i+   + s          +  +e  k+g+++i ++++a  a++e  eal++
   CTQ30126.1  19 KNLLKAGYSLVVSDRN--PEAI--ADVIAAGAETATTPKAIAEQCEVIITMLPNSphvkevalgeNGIIEGAKPGTVVIDMSSIAplASREISEALKA 112
                  5678888888887777..4444..45689********************86544444555556667778889*********9999777********** PP

                  CTEEEEE CS
  AlaDh_PNT_N 107 kgvtaia 113
                  kg+ +++
   CTQ30126.1 113 KGIDMLD 119
                  ***9987 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   6.3e-05      0.11      14      81 ..       4      64 ..       1     110 [. 0.75
   2 ?   -0.9   0.1      0.85   1.5e+03      18      37 ..     165     184 ..     157     190 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.3e-05
                  EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHHHHHT-SEEEE CS
  Shikimate_DH 14 kvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelkellaeadvvis 81
                  kv  iG G m++ + k+Ll++g+  +vv  R+ e  +++     +      + +  k++ ++++v+i+
    CTQ30126.1  4 KVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRNPEAIADVIAAGAE------TATTPKAIAEQCEVIIT 64
                  8999*******************9.********988887665533......34444555566666666 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.85
                   ES-SHHHHHHHHHHHCCT-C CS
  Shikimate_DH  18 iGaGemaelvakhLlakgvk 37 
                   iGaG++ +l+ + ++a ++ 
    CTQ30126.1 165 IGAGNVTKLANQVIVALNIA 184
                   89999999998888776655 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.8e-05      0.18       4      52 ..       8      48 ..       5      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.8e-05
                ES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTSH CS
      TrkA_N  4 iGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgdatde 52
                iGlG +G+ + ++L + g+ + vv d+++e+++ + + g+e        +
  CTQ30126.1  8 IGLGIMGKPMSKNLLKaGY-SLVVSDRNPEAIADVIAAGAE--------T 48
                9***************777.5************98777654........3 PP

>> UDPG_MGDP_dh  UDP-glucose/GDP-mannose dehydrogenase family, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00018      0.33       5      43 ..     170     208 ..     167     267 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
  UDPG_MGDP_dh   5 liKlaaNaflatkIsfiNelanlcealgidveeVieavg 43 
                   ++Kla+ ++ a++I+ + e  +l+ + g++ + V +a+ 
    CTQ30126.1 170 VTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIR 208
                   79********************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2137.92
//
Query:       CTQ30127.1  [L=256]
Description: alpha-dehydro-beta-deoxy-D-glucarate aldolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-62  208.3   0.0    8.7e-62  208.1   0.0    1.0  1  HpcH_HpaI        HpcH/HpaI aldolase/citrate lyase family
  ------ inclusion threshold ------
      0.011   14.6   0.0      0.014   14.3   0.0    1.2  1  PK               Pyruvate kinase, barrel domain
       0.11   11.6   0.0        4.8    6.2   0.0    2.2  2  PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain


Domain annotation for each model (and alignments):
>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.1   0.0   1.4e-65   8.7e-62       1     220 [.      20     245 ..      20     246 .. 0.98

  Alignments for each domain:
  == domain 1  score: 208.1 bits;  conditional E-value: 1.4e-65
                 EEEEEEESTSHHHHHHHCTC--SEEEEESSTSSSHHHHHHHHHHHHHHHHHHHHCTTTSSEEEEE-SSTTHHHHHHHGGHHHTTSSEEEESS--SHHHH CS
   HpcH_HpaI   1 riglflpganaalaekaaiagaDsvliDlEdavalaeKdaARvlvsealkqldalaaaasevvVRvnsldselikqdlevldlgaqvvlvPkvetaeea 99 
                 +ig++ ++an+ ++e + +ag+D++++D E+a+         ++v +++ ql+al+   s+ vVRv+++++ +ik+   +ld+g+ ++lvP+vetae+a
  CTQ30127.1  20 QIGCWCALANPISTEVLGLAGFDWLVLDAEHAP---------NDVTTLIPQLMALKGSSSAQVVRVPTNEPIIIKR---MLDIGFYNFLVPFVETAEQA 106
                 79*******************************.........**********************************...******************** PP

                 HHHHHHTSHTTTS---...................HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTT-TTSTTSHHHHHHHHHHHHT CS
   HpcH_HpaI 100 levvsalrepekgirg...................anketrllaqiEsaegvknaeeIaavegldgvflGaeDlsadlgtkrspegtevldarerilta 179
                 +++v+ +r+p++girg                   +nk++ +l+qiEs++gv+n+e+Iaa+eg+dgvf+G++Dl+a+lg+ +++ ++ev+ a+++i + 
  CTQ30127.1 107 AQAVASTRYPPEGIRGvsvshrgnmfgtvpdyfaqSNKNISILVQIESQTGVDNVEAIAATEGVDGVFVGPSDLAAALGHLGNAAHPEVQRAIQHIFAS 205
                 *************************************************************************************************** PP

                 THCEEEEEEE.E-SSHHHHHHHHHTTHCEEEEEEHHHHHHH CS
   HpcH_HpaI 180 araagiaaldtvasdiddaegflaegalfvalGfdgkllin 220
                 a++ g    +++a  + da+++l++ga+fva+G+d+ ++++
  CTQ30127.1 206 AKKHGK-PSGILAPVEADARRYLEWGATFVAVGSDLGVFRS 245
                 **9998.8999************************999875 PP

>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.3e-06     0.014     200     252 ..     128     182 ..      94     215 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.3e-06
                 SHHHHHHHHHHHTCCCTTSEEEEEE-SCHHHHTHHHHH..HHSSEEEEEHHHHHH CS
          PK 200 kasDvkevrevleeegkeikiiakienqegvenldeil..easDgimvarGDlGi 252
                 +++   +v +   +++k+i i+ +ie+q gv+n++ i   e  Dg+ v   Dl  
  CTQ30127.1 128 RGNMFGTVPDYFAQSNKNISILVQIESQTGVDNVEAIAatEGVDGVFVGPSDLAA 182
                 5555666777788999*******************99622567999999888865 PP

>> PEP-utilizers_C  PEP-utilising enzyme, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.005        30      66     114 ..      68     125 ..      26     134 .. 0.69
   2 ?    6.2   0.0   0.00081       4.8     222     253 ..     184     215 ..     140     227 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.005
                      HHHHHHHHHTTTSEEEE.EXXXSSCCGGSGGC........HHHH.XSXGGGSSXTHHH CS
  PEP-utilizers_C  66 eaykkvleamngrpvvv.RtlDiggdkelpel........keepeevNPmlGfRgirl 114
                      +  ++v++   + p+++ R+lDig + +l  +        + + + + P  G+Rg+++
       CTQ30127.1  68 SSSAQVVRVPTNEPIIIkRMLDIGFYNFLVPFvetaeqaaQAVASTRYPPEGIRGVSV 125
                      55567888888888877699******99988767777776666667777777777766 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.00081
                      HHHHSXTTTCHHCCCHHHHHHHHHHCCXEEEE CS
  PEP-utilizers_C 222 vaklydplepavlrlikevikaaeekglkvgi 253
                      + +l +  +p v+r+i+++   a+++g+  gi
       CTQ30127.1 184 LGHLGNAAHPEVQRAIQHIFASAKKHGKPSGI 215
                      55778999*******************98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2041.49
//
Query:       CTQ30128.1  [L=443]
Description: putative (D)-galactarate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-53  180.8  53.5    1.5e-47  162.3  41.3    2.0  2  MFS_1     Major Facilitator Superfamily
    0.00078   18.4  38.7       0.01   14.8  12.2    2.4  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3  41.3   1.6e-51   1.5e-47       1     316 [.      23     364 ..      23     365 .. 0.84
   2 !   28.1  15.5   1.1e-10   9.5e-07      61     171 ..     323     432 ..     319     441 .. 0.84

  Alignments for each domain:
  == domain 1  score: 162.3 bits;  conditional E-value: 1.6e-51
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa.......sslwlllvl 91 
                 +++++++++ +r++l++a +  +a++lg+s+ ++g ++++++++++++++p+G+l d+fG+++v+  +l++++l+ ++l  f+       +++  ++++
  CTQ30128.1  23 IFVVTAVNYGDRATLSIAGT-EVAKELGLSAVSMGYIFSAFGWAYLLMQIPGGWLLDKFGSKKVYSYSLFFWSLF-TFLQgFIdvfplawAGVS-MFFM 118
                 68999***************.9*****************************************************.666667322223344444.**** PP

       MFS_1  92 rvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.. 188
                 r++ G+ ++ +fpa a ++a+wfp +erg a ++++a+  ++ +l  +l g+l+ +lgW+ vf +++i+++++ ++ ++ ++ +p++++r s +e++  
  CTQ30128.1 119 RFMLGFSEAPSFPANARIVAAWFPAKERGTASAIFNAAQYFSLALFSPLLGWLTFALGWEHVFTVMGIIGFVLTII-WVKFVHNPTDHPRMSAAELKyi 216
                 *************************************************************************996.4555688888888888888899 PP

       MFS_1 189 ..........kgtgpaplvp....awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr... 270
                           ++++ +p++      +++ll+++ ++ ++++ ++  ++++++lt++p+yl+++ g+s  l +g++ +++al+g+++++l+g +sd    
  CTQ30128.1 217 seggavvdmdHKKEATPAAGpkmdYIRQLLTNRMMLGVFFGQYFLNTITWFFLTWFPIYLVQDKGMS-ILKVGFVASIPALFGFAGGVLGGLFSDYlig 314
                 *9**99988744444444446777*********665444444444456666****************.9*************************99966 PP

       MFS_1 271 ......lgrrrrlllallllllaalglallavtssavllllvlvliGfglgf 316
                       + r+ +++l++ll++ + l+ + ++++   v++l++l+++G g+g 
  CTQ30128.1 315 rgctltFARKLPIVLGMLLASSIILCNYTASTP--LVITLMALAFFGKGFGA 364
                 666665555666666666666666666666666..8888889999**99985 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 1.1e-10
       MFS_1  61 rrrvlllglllfalglllll.fasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyil 157
                 r+  ++lg+ll ++   +l+ + + +++l++  +  ++++ ++ ++g  +i+d++pke  g+  g+++++ ++++i +pl+ g+++ ++ ++ ++ +++
  CTQ30128.1 323 RKLPIVLGMLLASSI--ILCnY-TASTPLVITLMALAFFGKGFGALGWPVISDVAPKEIVGLCGGVFNVFGNVASIATPLVIGYIVsELHSFNGALIFV 418
                 455999999999999..44436.3444588888888888889999999999***********************************89999******** PP

       MFS_1 158 aivsllafvlflll 171
                 ++ +l+++v+ l++
  CTQ30128.1 419 GGSALMMMVCYLFV 432
                 *********84443 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8  12.2   1.1e-06      0.01     253     437 ..      15     199 ..       4     203 .. 0.79
   2 !    9.1  18.5     6e-05      0.54     238     438 ..     238     433 ..     207     438 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-06
                 .HHHHHHHHHHHHHHTT..HHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHH...HHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS. CS
    Sugar_tr 253 qrlligvvlqifqqltG..inaimyysptifenlglsksllvtiivgvvnfvatfvai...flvdrfGRRtllllGaagmaicfvilgivalllvaksk 346
                  r li +++ +++ +++   + + + ++++ ++lgls    +  i+++  ++  ++ i   +l d+fG ++++  ++++ ++++++ g   ++++ +  
  CTQ30128.1  15 TRYLILLMIFVVTAVNYgdRATLSIAGTEVAKELGLSAV-SMGYIFSAFGWAYLLMQIpggWLLDKFGSKKVYSYSLFFWSLFTFLQG-FIDVFPLA-- 109
                 4555555655555554311566778899***********.555555555555555444444**************************9.44444444.. PP

                 ..CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS CS
    Sugar_tr 347 aasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffv 437
                  +++v+++f+ +++ + ++   p  + +v+  fp + R++a+ai  a++ ++  l s l  ++t a+g   vf v +++  + +i+ + fv
  CTQ30128.1 110 -WAGVSMFFMRFMLGFSEAPSFPANARIVAAWFPAKERGTASAIFNAAQYFSLALFSPLLGWLTFALGWEHVFTVMGIIGFVLTIIWVKFV 199
                 .679999999999999999999**********************************************88888888888888888777776 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 6e-05
                 ....HTTHHHHSH...HHHHHH.HHHHHHHHTTHHHHHHHTTTHHHHSS-THH...HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHH CS
    Sugar_tr 238 ekaswkellssktvrqrlligv.vlqifqqltGinaimyysptifenlglsks...llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfv 332
                 ++ ++++ll++     r+++gv   q f +  ++++++ ++ ++ ++ g+s     ++++i   +  +  ++ ++f    +GR  +l +     +++ +
  CTQ30128.1 238 KMDYIRQLLTN-----RMMLGVfFGQYFLNTITWFFLTWFPIYLVQDKGMSILkvgFVASIPALFGFAGGVLGGLFSDYLIGRGCTLTFARKLPIVLGM 331
                 25667777777.....555555156899999********************998888888888887777777777766678998888888555555555 PP

                 HHH....HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHH CS
    Sugar_tr 333 ilg..ivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlf 429
                 +l+  i+ + ++a+    + ++i++  + +a+f+ g+g + w ++s+++p+++ +++  +  +  ++a++++ l++ +i++ ++ +   l+f+g  +l+
  CTQ30128.1 332 LLAssIILCNYTAS----TPLVITL--MALAFFGKGFGALGWPVISDVAPKEIVGLCGGVFNVFGNVASIATPLVIGYIVSELHSFNGALIFVGGSALM 424
                 55545566677776....4555555..5568******************************************************************** PP

                 HHHHHHHS- CS
    Sugar_tr 430 iifvfffvp 438
                 ++++++fv+
  CTQ30128.1 425 MMVCYLFVV 433
                 *******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 2839.78
//
Query:       CTQ30129.1  [L=523]
Description: D-galactarate dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.8e-146  486.6   0.0   5.6e-146  486.3   0.0    1.0  1  GD_AH_C   D-galactarate dehydratase / Altronate hydrolase, C 
    1.9e-13   50.8   1.1    6.7e-13   49.1   0.4    2.2  2  SAF       SAF domain


Domain annotation for each model (and alignments):
>> GD_AH_C  D-galactarate dehydratase / Altronate hydrolase, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  486.3   0.0  6.2e-150  5.6e-146       2     391 ..     119     521 ..     118     522 .. 0.97

  Alignments for each domain:
  == domain 1  score: 486.3 bits;  conditional E-value: 6.2e-150
     GD_AH_C   2 tfkGYrradgrvGtrNyvlilptvecvnkvaeaiaeavkeel..klpnvdgvvalthqygcgqlg..edaelllrtLaglakhPNvag.vlvlglgcen 95 
                 tf+GYr+adg+vGt+N + i+++v+cv++v++ +++ ++++l  ++pnvdgvv l+h ygcg++     a + +rt++++a +PN++g v+v+glgce+
  CTQ30129.1 119 TFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLlpNYPNVDGVVGLNHLYGCGVAInaPAAVVPIRTIHNIALNPNFGGeVMVIGLGCEK 217
                 9****************************************9********************99877889999************************** PP

     GD_AH_C  96 lqieelaeeikeadekpve...vltiqes...gtekeieagleaveelleeankakReevplseLvvglkCGgSDgfSGitANPavGaasdllvaaGgt 188
                 lq+e+l++  ++ ++ pv    ++++q++   g++++++++l+ +e++l+++n+++Re++p+seLvvg++CGgSD+fSG+tANPavG+asdllv++G+t
  CTQ30129.1 218 LQPERLLQGTEDVKSIPVDsasIVSLQDEkhvGFKSMVDDILQVAERHLAKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGAT 316
                 *********99988855444447888877779******************************************************************* PP

     GD_AH_C 189 ailsEtpEliGaehllaeRavneevaekllklikkyeeyakaegadveenpspGNkagGLttieeKSlGaiaKggtspiedVleyaervkkkGlvlldt 287
                 +++sE++E+ +a hll+ Ra neev ++ll+ +++y++y+   ++d ++npspGNk+gGL +++eK+lG+iaK+g+s i++Vl++++r++k+Gl++++t
  CTQ30129.1 317 VMFSEVTEVRDAIHLLTPRAINEEVGKRLLEEMAWYDNYLDMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAAT 415
                 *************************************************************************************************** PP

     GD_AH_C 288 pgndlesvtglvAaGanvvlFtTGrGtptgnpvvPviKvatntelaermsddiDvdagrilegeetieelgeellelilrvasGe.ktkaeklg.qeef 384
                 p++d+++ t++vA+G++v +FtTGrGtp+g ++vPviK+at+tela+r+ d +D++ag+i++geetie++g++l+e il+vasG+ kt ++++g ++++
  CTQ30129.1 416 PASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWYDLMDINAGTIATGEETIEDVGRKLFEFILDVASGRkKTFSDQWGlHNQL 514
                 *************************************************************************************9************* PP

     GD_AH_C 385 viwkkgv 391
                 ++++ ++
  CTQ30129.1 515 AVFNPAP 521
                 **99865 PP

>> SAF  SAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.4   7.5e-17   6.7e-13       1      62 [.      22      91 ..      22      92 .. 0.96
   2 ?   -1.2   0.0      0.36   3.2e+03       8      18 ..     468     478 ..     467     481 .. 0.81

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 7.5e-17
                EEEEEESST..B-TT-BEBTTTEEEECECGG.CCTSCCCGG.......HHHHTTEEESS-B-TT-B-BGGGE CS
         SAF  1 dnVvvAard..ikaGeviteddltlkrpias.hkigllpia.......ygeviGkratrdikaGepvhahnl 62
                dnV++ ++d  + aG+++ +d+ltl+++i++ hk++l++i+       ygeviG +a rdi+ G+++ ++ +
  CTQ30129.1 22 DNVAIIVNDrgLTAGTRF-PDGLTLVEHIPQgHKVALVDIPahgeiirYGEVIG-YAVRDIPQGSWIDESLV 91
                89999999999*******.***********************************.************98876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.36
                 STB-TT-BEBT CS
         SAF   8 rdikaGevite 18 
                  di+aG++ t+
  CTQ30129.1 468 MDINAGTIATG 478
                 59****99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3790.34
//
Query:       CTQ30130.1  [L=287]
Description: putative methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-29  103.8   0.7    1.5e-29  103.5   0.1    1.5  2  TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
  ------ inclusion threshold ------
      0.044   13.7   0.0      0.088   12.7   0.0    1.4  1  UPA           UPA domain


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.1   1.7e-33   1.5e-29       2     212 ..      14     213 ..      13     214 .. 0.87
   2 ?   -2.7   0.1      0.52   4.7e+03     113     132 ..     240     259 ..     225     277 .. 0.51

  Alignments for each domain:
  == domain 1  score: 103.5 bits;  conditional E-value: 1.7e-33
  TP_methylase   2 lylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeeleleapmgkekepleeayeeiaealaealragkdVvllv.sGDPlvygtgs 97 
                   ly+V +++G+  ++T+rAl++l+++d+++++d+r++ +ll++ a        +++    ++ + ++ ae+l ++l++g++++l++ +G Pl+ ++g 
    CTQ30130.1  14 LYIVPTPIGNLSDITQRALEVLQAVDLIAAEDTRHTGLLLQHFAI-------NARLFALHDHNEQQKAETLLAKLKEGQNIALVSdAGTPLINDPGY 103
                   9*******************************9999999987653.......3444444556677788888************************** PP

  TP_methylase  98 elvealrareagieveviPGvsslqaaaarlgiplteggevlsvllpglakeeereleallangdtlvllkaprklaelaelLkealyddttpvavv 194
                   +lv+ +r+  a+i+v  +PG++++ aa +++g+p + +++   +l p+++k +++ l+al ++++tl++++++++l e +e++ + l ++ + v+++
    CTQ30130.1 104 HLVRTCRE--ANIRVVPLPGPCAAIAALSAAGLPSD-RFCYEGFL-PAKSKGRRDTLKALEEEPRTLIFYESTHRLVESLEDICAVL-GESRYVVLA 195
                   ********..************************88.88888888.89999***********************9666666666653.345799*** PP

  TP_methylase 195 eragtedervvrgtleel 212
                   ++++++ e +  ++++el
    CTQ30130.1 196 RELTKTWESIHGAPIGEL 213
                   ****99999988888876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.52
  TP_methylase 113 eviPGvsslqaaaarlgipl 132
                   e +P+    ++a  ++ +pl
    CTQ30130.1 240 EALPAAALRTLALLQAELPL 259
                   33333333333333333333 PP

>> UPA  UPA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.8e-06     0.088      46      87 ..     157     198 ..     147     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.8e-06
         UPA  46 gslleepktllfkdsteslrlSiedvpsslwkskllakyqei 87 
                 + l eep+tl f +st+ l  S+ed++ +l +s+ +    e+
  CTQ30130.1 157 KALEEEPRTLIFYESTHRLVESLEDICAVLGESRYVVLAREL 198
                 56889***********************99999887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2299.48
//
Query:       CTQ30131.1  [L=702]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-132  443.4  26.3    3.1e-85  287.0   0.3    2.0  2  LppC      LppC putative lipoprotein
  ------ inclusion threshold ------
      0.018   15.2   2.0      0.036   14.3   0.7    2.3  2  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
      0.069   13.7  17.7       0.11   13.0   1.9    4.0  4  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> LppC  LppC putative lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.3  20.3   1.3e-50   7.9e-47       2     248 ..      41     286 ..      40     324 .. 0.94
   2 !  287.0   0.3   5.2e-89   3.1e-85     250     535 .]     383     696 ..     373     696 .. 0.97

  Alignments for each domain:
  == domain 1  score: 160.3 bits;  conditional E-value: 1.3e-50
                 S---S-HHHHHHTCTT--SHHHHHHHHHHHHHHHHTT-HHHHHHHHHT--..S--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHTS-GGGS-HHHHHHH CS
        LppC   2 kdpnasaeqylakasqsqgeeqntykllAarvlieenkiaqaqallrelavqeLtdeqkldkslleaelaaakeqneeAlqqlslqslssLspsqksry 100
                 ++++a++ +yl++++qs ++ + +++llA+r+l +e+k +qa  l ++l+  +L+ +q  ++sll  e+ +a++ +++A + l  ++ ++L + q++ry
  CTQ30131.1  41 GTSQANSSFYLQQMQQSTNDSRTNWQLLAIRALLQEGKKQQAIDLFNQLP-ANLNSTQAREQSLLAVEVKLAQNDYQAARNLLAKIDPTNLEQPQQARY 138
                 67899*********************************************.9*********************************************** PP

                 HHHHHHHHHHTT-HHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHS-HHHHHC.---TT-HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHSTTS CS
        LppC 101 yelraailearkdaleavkerieldqllsdvkakqenqdkiwallrsldagvlnn.aaeegeaaLsgwltLarllktlesqpaqlkqslesWkaeyPeh 198
                  +++ ++ +  k +l   +++i+ ++llsd k++q+n+d++w+ l s+++++ n    +++e+ L+gwl L+r+  ++ ++p+ lk+ ++ W+++yP+ 
  CTQ30131.1 139 WQAQIDASQ-GKPSLTLLRALIAQQPLLSDAKQRQKNIDATWQALTSMPQDQANAlVINADENILQGWLDLQRMWFDNRNDPTLLKAGVKDWQTRYPQN 236
                 998877654.46799****************************************9999**************************************** PP

                 HHHHS--HHHHHHHT--------EEEEE--SSTTHHHHHHHHHHHHHHH. CS
        LppC 199 paakllPkaltdllnlqqtkltkvalLLPlsGklakvaetirdGFlaakd 248
                 p+ak+lP+al ++ n++   + k+al LPl+G++ + ++ti++GF+aak+
  CTQ30131.1 237 PGAKMLPTALVNMQNYKPASINKIALFLPLNGQASIFGRTIQQGFEAAKN 286
                 ************************************************93 PP

  == domain 2  score: 287.0 bits;  conditional E-value: 5.2e-89
                 .TT--S-EEEEETTTS-HHHHHHHHHHTT--EEE---SHHHHHHHHHSGG.GTTSEEEES---TT---BTTEEE----HHHHHHHHHHHHHHTT-SSEE CS
        LppC 250 etqsnaqvkvfDtaaeslediyaqakaagidlvVGPLlkqnvdkllaqeqlvqsidvLaLNssdnsraiaqlcyfgLspEdeaesaAsklwadgvRnpl 348
                 + + +a++k++Dt+++++ ++ aqa+++g+ lvVGPLlk+nv+++++++     ++vLaLN++++ ++ a+lcyf+LspEdea+ aA ++ ++g  +pl
  CTQ30131.1 383 AANPSAELKIYDTTTQPISQLLAQAQQDGATLVVGPLLKENVEEVIKSNTP---LNVLALNQPEKVESRANLCYFALSPEDEARDAARHIHQQGKQTPL 478
                 5678899**************************************998876...********************************************* PP

                 EEEESSHHHHHHHHHHHHHHHHHHSS--EEEEESSGGGHHHHHH..............................HH-.TTTEEEEE---HHHHHHHHHH CS
        LppC 349 vlvpqndlGrRvveAFnerwqqlagtdaaielvdqpadlaqqlk..............................dasrqdidavyivanskelaeikpt 417
                  lvp+++lG+Rvv+AF ++w +l+g  +  + ++ +a+l   ++                               +s  ++da yi a+++++a ikp+
  CTQ30131.1 479 LLVPRGALGDRVVSAFADEWLKLGGASVLQQRFGSTAELRAGVNggggialsgtpvstlpsaqnsilgsadempVSSGGSVDAAYILATPEQIAYIKPM 577
                 *************************************************************************8445579******************* PP

                 HHT...T-TTEEEEE-GGG--HHT-HHHHHHTTT-EEEE-GGGG-SSSHHHHHHH.HHTTT-HHHHHHHHHHHHHHHHHTTHHHHHHSTT--EEETTEE CS
        LppC 418 lana..sakdlklyasSrsvsgntkpeqdedlngiqfsdiPflvdpassikkkvaaklpeaegsllrLyAlGvDAyrLivelnelkavpgytidGlTGt 514
                 +a+   s+ ++ lyasSrs  g+ +p+++ +++g+q+s+iP+l   ++s  ++       +++sl rLyA+G+DA+ L++++ ++++ pg++++G TG 
  CTQ30131.1 578 IAMRngSQSNVTLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGSNPSLMQQAL-SAVRNDYSLARLYAMGADAWSLANHFTQMRQTPGFELNGNTGD 675
                 **99889999***************************************999977.8999*************************************** PP

                 EEE-TT-BEEEE-EEEEEETT CS
        LppC 515 LsldencnveRdltWaeyrnG 535
                 L ++++c+++R+l+W +y++G
  CTQ30131.1 676 LTANQDCVINRKLSWLKYQQG 696
                 *******************98 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.7     6e-06     0.036       7      81 ..      46     124 ..      21     125 .. 0.78
   2 ?   -3.3   0.0       1.9   1.1e+04      64      78 ..     451     465 ..     449     468 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6e-06
                 HHHHHHHHHH.HHH--HHHHHHH.HHHHHHTT-HHHHHHHHHCTSHHHC-H...HHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   7 nAiflaerllaaetespedayll.AlclylngqykrAyellrkaklnsksl...gcrylfAqcllkLkkyeeAiaaLek 81 
                 n  f++  ++++ ++s  +  ll   +l++ g+ ++A++l++++  n +s    +  +l+ ++ l+++ y+ A+++L k
  CTQ30131.1  46 NSSFYLQQMQQSTNDSRTNWQLLaIRALLQEGKKQQAIDLFNQLPANLNSTqarEQSLLAVEVKLAQNDYQAARNLLAK 124
                 55677777776555555555555479******************44444442455666777**************9977 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.9
                 HHHHHTT-HHHHHHH CS
      ANAPC3  64 qcllkLkkyeeAiaa 78 
                  c+++L+  +eA++a
  CTQ30131.1 451 LCYFALSPEDEARDA 465
                 588999999999887 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.9   1.8e-05      0.11      13      66 ..      50     105 ..      43     106 .. 0.78
   2 ?    8.6   3.1   0.00044       2.7      29      67 ..     103     142 ..     101     145 .. 0.73
   3 ?   -1.8   0.0      0.76   4.5e+03      20      44 ..     232     255 ..     227     256 .. 0.85
   4 ?   -1.7   0.1      0.72   4.3e+03      13      32 ..     627     646 ..     626     660 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.8e-05
      TPR_19  13 lleqalqedpk..naearllLAeallalgqldeAealLdalpeedpdd.aryasLlA 66 
                 +l+q+ q++ +    + +ll ++all+ g  ++A++l ++lp+    + ar +sLlA
  CTQ30131.1  50 YLQQM-QQSTNdsRTNWQLLAIRALLQEGKKQQAIDLFNQLPANLNSTqAREQSLLA 105
                 57775.555552366667777**********************99995577667776 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00044
      TPR_19  29 llLAeallalgqldeAealLdalpeedpd...daryasLlAk 67 
                 ll +e+ la++++++A++lL+++ + +     +ary+  +A+
  CTQ30131.1 103 LLAVEVKLAQNDYQAARNLLAKIDPTNLEqpqQARYW--QAQ 142
                 5668999999999999999999987766632145555..555 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.76
      TPR_19  20 edpknaearllLAeallalgqldeA 44 
                  +p+n+ a++ L  al+++ +++ A
  CTQ30131.1 232 RYPQNPGAKM-LPTALVNMQNYKPA 255
                 589******9.99999999998866 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.72
      TPR_19  13 lleqalqedpknaearllLA 32 
                 l++qal++  ++  ++ l+A
  CTQ30131.1 627 LMQQALSAVRNDYSLARLYA 646
                 67888877666555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4819.69
//
Query:       CTQ30132.1  [L=128]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-26   91.6   0.1    3.2e-26   91.4   0.1    1.1  1  UPF0102   Uncharacterised protein family UPF0102
  ------ inclusion threshold ------
      0.022   14.6   0.0      0.035   13.9   0.0    1.3  1  Vsr       DNA mismatch endonuclease Vsr


Domain annotation for each model (and alignments):
>> UPF0102  Uncharacterised protein family UPF0102
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.1   3.5e-30   3.2e-26       2      78 ..      23     113 ..      22     114 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 3.5e-30
                 HHHHHHHHHHTT-EEEEEEEEETTEEEEEEE..TTEEEEEEEEE-......-------HHHHHHHHHHHHHHH............EEEEEE CS
     UPF0102   2 EelaaeyLekkgyeilernwrcragEiDiia..tevlvfvEVKtRssekfgspaeavtprKqrrlrraaeayl............rfDvva 78 
                 E+ a+++Le +g+++++ n r r gEiD+i+  ++v vf+EV++R+s+++g++a++vtp+Kq+rl +aa+++l            rfDvva
  CTQ30132.1  23 ENQARRWLEGQGLRFIAANARERGGEIDLIMrdGTVTVFIEVRYRRSARYGDAAASVTPQKQQRLLKAARLWLcrqngsfetvdcRFDVVA 113
                 99*******************************889*****************************************************97 PP

>> Vsr  DNA mismatch endonuclease Vsr
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.9e-06     0.035      17      63 ..      16      63 ..       5      69 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.9e-06
                XSSSXHHHHHHHHHHHHTT--EEES-.TTSTT--SEEEGGGTEEEEEE CS
         Vsr 17 kskdtkpElrlaklltglGlryRknd.kslaGkPDvvlkkykvvvFvh 63
                k ++ + E   ++ l g+Glr+   + ++  G+ D+++ +  v vF++
  CTQ30132.1 16 KQTGDAWENQARRWLEGQGLRFIAANaRERGGEIDLIMRDGTVTVFIE 63
                4556678999************875505677899************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 982.20
//
Query:       CTQ30133.1  [L=196]
Description: DnaA initiator-associating factor for replication initiation [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-33  114.7   1.4    3.7e-33  114.5   1.4    1.1  1  SIS_2     SIS domain
    4.1e-07   29.9   0.6    1.3e-05   25.1   0.0    2.5  3  SIS       SIS domain
  ------ inclusion threshold ------
      0.031   13.9   0.0      0.044   13.4   0.0    1.2  1  HobA      DNA replication regulator


Domain annotation for each model (and alignments):
>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   1.4   6.2e-37   3.7e-33       2     138 .]       9     144 ..       8     144 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.5 bits;  conditional E-value: 6.2e-37
                 HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST....THHHHHTT-TTHHHHHHHH CS
       SIS_2   2 YlaevteilerivetqaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaragglaeferialpalalhtda..eatkssalerdegyakqilrl 98 
                 ++++++  ++++ e+  +ai +aa ++++sl ng+k+l +G+G Saa+a+++aa +++++e+er++lpa+al+td    ++++++   de yakq+++l
  CTQ30133.1   9 FTESIQTQIAAA-EALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPGLPAIALNTDNvvLTAIANDRLHDEIYAKQVRAL 106
                 677888888888.999***********************************************************8889999999999*********** PP

                 TT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2  99 vrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                   +++gDvLl iS+ Gn+  +v+a+eaa +r+m+++Alt+
  CTQ30133.1 107 --GHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTG 144
                 ..************************************97 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.91   5.4e+03     114     128 ..       9      23 ..       6      23 .. 0.83
   2 ?    2.7   0.0     0.018   1.1e+02       3      26 ..      39      62 ..      37      67 .. 0.85
   3 !   25.1   0.0   2.2e-09   1.3e-05      47     109 ..     103     168 ..      93     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.91
                 HCHHHHHHHHHHHHH CS
         SIS 114 stksltaqlaaldal 128
                 +t s+++q aa +al
  CTQ30133.1   9 FTESIQTQIAAAEAL 23 
                 789999999999886 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.018
                CTSSEEEEEESHHHHHHHHHHHHH CS
         SIS  3 akakriyvlGaGtsyaiakelalk 26
                 + ++i+  G Gts+a a+ +a+ 
  CTQ30133.1 39 LNGNKILCCGNGTSAANAQHFAAS 62
                56789**************99976 PP

  == domain 3  score: 25.1 bits;  conditional E-value: 2.2e-09
                 GGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS...SEEEEEEEECH CS
         SIS  47 vlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplarea...dlalyinaepe 109
                 v al   +d++++is++g+++d v+a+e a  r+++i+a+T+ +g  la      d+ ++i++ + 
  CTQ30133.1 103 VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLgqqDVEIRIPSHRS 168
                 56667789*************************************999976554466666666555 PP

>> HobA  DNA replication regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.4e-06     0.044      33      82 ..      31      81 ..      21     103 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.4e-06
                HHHHHHHHHTT-EEEEEE-GGG.HHHHHHHHHHHSSS-TTS----EEESTT CS
        HobA 33 vakalkkllegkslivltdekr.eWfeeyilkkinksqkerPllpivslks 82
                +++ +++ll+g+ ++ + + +  +  +++  + in+ ++erP lp + l++
  CTQ30133.1 31 AMTLVQSLLNGNKILCCGNGTSaANAQHFAASMINRFETERPGLPAIALNT 81
                567899**********99866515667889999**************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1452.37
//
Query:       CTQ30134.1  [L=191]
Description: conserved hypothetical protein; putative periplasmic or secreted lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-30  105.8   3.1    4.2e-15   55.8   0.3    2.2  2  BON       BON domain


Domain annotation for each model (and alignments):
>> BON  BON domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.2   9.2e-18   1.6e-13       1      67 [.      46     113 ..      46     115 .. 0.94
   2 !   55.8   0.3   2.4e-19   4.2e-15       1      67 [.     124     189 ..     124     191 .] 0.96

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 9.2e-18
                 EHHCCHHHHHHHHHHH.CHTTGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEEE CS
         BON   1 dDaeiaakvkaalakd.ggldaadinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnelkv 67 
                 dD++++ +v++al kd + +++a+inV+ ++G+V+L+G+ ++++   +A +ia +v+G ++V ne++ 
  CTQ30134.1  46 DDSTLELRVNSALSKDeQIKKQARINVTAYQGKVLLTGQSPTPDLSARAKQIAMGVEGTTEVFNEVRQ 113
                 79**************555599****************************************999976 PP

  == domain 2  score: 55.8 bits;  conditional E-value: 2.4e-19
                 EHHCCHHHHHHHHHHHCHTTGCCCEEEEETTCEEEECEEECHHHHHHHHHHHHCCTTEEEEEEEEEE CS
         BON   1 dDaeiaakvkaalakdggldaadinVevenGvVtLsGtVdseaekekAveiarnvaGVkkVvnelkv 67 
                 +D++i++kv+++l++ +++++++++V++en +V L+G V ++ e ++A++ia +v+GV +V+  +++
  CTQ30134.1 124 SDTWITTKVRSQLLSTDQVKSSNVKVTTENSEVFLMGLV-TDREGRAAADIASRVSGVSRVTTAFTY 189
                 79*************************************.*********************988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1417.77
//
Query:       CTQ30135.1  [L=346]
Description: putative permease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-36  125.8  35.6    7.2e-26   91.0  26.3    2.1  2  ArsP_1    Predicted permease


Domain annotation for each model (and alignments):
>> ArsP_1  Predicted permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   1.8   5.8e-17     1e-12     163     252 ..      62     151 ..      21     152 .. 0.84
   2 !   91.0  26.3     4e-30   7.2e-26      14     290 ..      75     342 ..      63     345 .. 0.87

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 5.8e-17
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      ArsP_1 163 alkafaknevkewlelgkyLiiGvaiagviqaflpesvllsllggnsvsssllamligvvlyvcslgevpfiaalfesglalGsalAfLl 252
                  l a  + ++ ++l+++k  ++Gv+++ +iq+++p+++ll+ lg+  +  +ll+++++ +  +c+   +p++a   ++++++G+alAf +
  CTQ30135.1  62 PLMAAWDYAMVYFLAVWKAAVLGVLLGSLIQVLIPRDWLLRTLGQSRFQGTLLGAIFSLPGMMCTCCAAPVAAGMRKQQVSMGGALAFWM 151
                 4455667789999***************************************************************************65 PP

  == domain 2  score: 91.0 bits;  conditional E-value: 4e-30
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      ArsP_1  14 leallaLvlgflisgaiqvfvkeekiielLgprnrlisllvaallGfllpvCscsavPlarrllkkGaplgaavaFlvaaPainiiaiiltlillgwql 112
                 l ++ a vlg+l+ ++iqv ++++ + ++L  ++r+ + l++a+++    +C c a P+a+++ k+ +++g a+aF ++ P +n++ ++ + ++lgwq+
  CTQ30135.1  75 LAVWKAAVLGVLLGSLIQVLIPRDWLLRTL-GQSRFQGTLLGAIFSLPGMMCTCCAAPVAAGMRKQQVSMGGALAFWMGNPLLNPATLVFMGFVLGWQF 172
                 6788999***********************.8999**************************************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      ArsP_1 113 lvarivlalivaiviglvleylfkeeelekaarevaeaglekltlkpklealkafaknevkewlelgkyLiiGvaiagviqaflpesvllsllggnsvs 211
                 +++r+v++l++ + ++ + ++ +ke+  +  a   ++   + + ++  + + +   +  +  + ++ ++ i++v++ g+  ++l       +   n+++
  CTQ30135.1 173 ALVRLVAGLATVLTVATLVQKWVKEAATQPVAM--PD--VQAEASQGGFFS-R-WLRALWTLFWNTIPVYILAVLVLGAARVWLFPHADGVV--DNTLF 263
                 *******************99998887766664..44..112222222221.1.3455666666777999**************77766666..89*** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      ArsP_1 212 ssllamligvvlyvcslgevpfiaalfesglalGsalAfLlagpllslpellillkvlkkklvavllglvvvsvvlagl 290
                  ++ +++ g +  + +++e+p++++ +  g+++ +alA+L+  p++s+p+l++l+k++ +k + +  glv++   ++g 
  CTQ30135.1 264 WVIAMAIAGCLFVIPTAAEIPIVQTMMLAGMGTAPALALLITLPAVSVPSLIMLRKAFPAKALWLTGGLVALCGAIVGA 342
                 *************************************************************999988888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2550.59
//
Query:       CTQ30136.1  [L=215]
Description: putative nucleoside-diphosphate-sugar epimerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-08   34.6   0.0    2.6e-08   34.0   0.0    1.3  1  NAD_binding_10  NAD(P)H-binding
    3.7e-06   27.4   0.0    3.3e-05   24.3   0.0    2.2  3  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
    0.00038   20.0   0.0    0.00062   19.3   0.0    1.5  1  Epimerase       NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.033   13.3   0.0        1.4    8.0   0.0    2.2  2  NAD_binding_4   Male sterility protein


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   5.9e-12   2.6e-08       1     180 [.       8     189 ..       8     193 .. 0.66

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 5.9e-12
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC...HHHH........HHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgadaVvsalggggk...deeg........aknivda 84 
                     GAtG v  +l++ l ++  +++   +  p + + l+  ++      d + +++la++++ +d+V+++lg++++    +e+        ++ ++  
      CTQ30136.1   8 GATGLVSGHLLRLLQNEPRIST---IAAPTRRP-LA-PAEGVFNPHDPQLTDALAQVVDPVDIVFCCLGTTRReagSKEAfvhadytlVVDTALT 97 
                     9**********99988875443...34466666.43.22333445788889*****************988885652222566663334444445 PP

                     HHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSE.EEEEEE-CEE-ST--SEEEE....E..TTSS----EEEHHH CS
  NAD_binding_10  85 akeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgld.wTivrpggLtdepttkyrvv....e..kgepfkggsisrad 172
                      k+ g +++++vsa+g++ +  ++   +       y + k ++e+ l + +    Ti rp++L+ e ++k           +  p + +si+ +d
      CTQ30136.1  98 GKRLGAQHMLVVSAMGANAH--SP--FF-------YNRVKGEMEAALIEQDWPrLTIARPSMLSGEREKKRANEtflaPlfRLLPGNWKSIAARD 181
                     599**************953..22..23.......44569999999888776659********98864433222112221122233446999999 PP

                     HHHHHHHH CS
  NAD_binding_10 173 VAdvlvav 180
                     VA +l+a 
      CTQ30136.1 182 VAIALLAE 189
                     99877765 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   7.3e-09   3.3e-05       2      95 ..       4      93 ..       3     109 .. 0.77
   2 ?    3.0   0.0     0.029   1.3e+02      33      83 ..      73     121 ..      70     132 .. 0.76
   3 ?   -3.6   0.0       3.2   1.5e+04      16      35 ..     184     205 ..     181     209 .. 0.66

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 7.3e-09
                    EEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SCHHHHHHHHHHH.HHTTS.EEEE CS
  Semialdhyde_dh  2 vaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalpagvskelapkl.aeagv.kviD 95
                    v + GatG v   llrlL+++p ++ +++ +++  a  + + ++    + +d +++d+ ++ ++ vdivf++l+    ++  +++ ++a+   v+D
      CTQ30136.1  4 VLLTGATGLVSGHLLRLLQNEPRISTIAAPTRRPLA--PAEGVF----NPHDPQLTDALAQVVDPVDIVFCCLGTTRREAGSKEAfVHADYtLVVD 93
                    7789******************99999977777733..333333....489999999999999**********98776665544434444435666 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.029
                     STTTTTSBHHHHSGGGTTTECEBEEE.GGGGGC.TT-SEEEE-SCHHHHHHHH CS
  Semialdhyde_dh  33 ssrsaGkklaeavkaleegkdlkved.vdeeel.kevdivflalpagvskela 83 
                     ++r+aG+k a+++       +l+v++  + + l ++  +v++a++a++++++ 
      CTQ30136.1  73 TRREAGSKEAFVHA----DYTLVVDTaLTGKRLgAQHMLVVSAMGANAHSPFF 121
                     55669999999988....66667766555566679999********9999886 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.2
                     HHHHHC..TSSEEEEEEEESTT CS
  Semialdhyde_dh  16 lrlLee..hpevelvvllsssr 35 
                     + lL+e  +p  e v++lsss+
      CTQ30136.1 184 IALLAEalSPTHEGVRILSSSE 205
                     5666666667777777777765 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.4e-07   0.00062       1     114 [.       4     110 ..       4     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.4e-07
                 EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC.EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledl.elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtl 96 
                 +l+tGatG++  +l++ l+++    ++ + +r++ a +++    + + ++  lt  +al+++++   +d+v+ +   g+ ++++ ++++f++++  +++
  CTQ30136.1   4 VLLTGATGLVSGHLLRLLQNEPriSTIAAPTRRPLAPAEG----VfNPHDPQLT--DALAQVVD--PVDIVFCC--LGTTRREAGSKEAFVHADYTLVV 92 
                 699*******************966688888885444443....2345555555..699*****..9*******..****************9999888 PP

                 HHHHHHHHHTCTEEEEEE CS
   Epimerase  97 nlleaarkagvkrllfls 114
                 + +   ++ g++ +l +s
  CTQ30136.1  93 DTALTGKRLGAQHMLVVS 110
                 877777777777777666 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00032       1.4       1      30 [.       6      35 ..       6      41 .. 0.87
   2 ?    3.2   0.0    0.0091        41     174     217 ..     120     160 ..      72     175 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00032
                   EE-TTSHHHHHHHHHHHHHS-.T.EEEEEE- CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpev.kiyllvR 30
                   lTGaTG +  +Ll+ LL+++p++ +i++  R
     CTQ30136.1  6 LTGATGLVSGHLLR-LLQNEPRIsTIAAPTR 35
                   8***********96.8888898989988776 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0091
                    CHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE--SSST---T CS
  NAD_binding_4 174 ntYeqsKalaEklvrearrrsglpvvivRpsiitgesktGwing 217
                      Y++ K + E  + e+      +++i Rps++ ge ++  +n+
     CTQ30136.1 120 FFYNRVKGEMEAALIEQDWP---RLTIARPSMLSGEREKKRANE 160
                    55777777777777766633...589********9877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       226  (0.0126053); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1588.23
//
Query:       CTQ30137.1  [L=178]
Description: putative intracellular protease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-53  179.6   0.0    4.5e-53  179.4   0.0    1.0  1  DJ-1_PfpI      DJ-1/PfpI family
    0.00046   20.0   0.0    0.00088   19.1   0.0    1.5  1  GATase         Glutamine amidotransferase class-I
     0.0078   15.8   0.0      0.011   15.3   0.0    1.2  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
  ------ inclusion threshold ------
      0.029   14.1   0.0      0.056   13.2   0.0    1.5  1  Peptidase_C26  Peptidase C26
      0.063   13.1   0.0       0.08   12.8   0.0    1.3  1  SNO            SNO glutamine amidotransferase family
       0.12   11.5   0.0       0.23   10.5   0.0    1.5  1  GATase_5       CobB/CobQ-like glutamine amidotransferase doma


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.4   0.0   1.5e-56   4.5e-53       1     163 [.       3     167 ..       3     169 .. 0.98

  Alignments for each domain:
  == domain 1  score: 179.4 bits;  conditional E-value: 1.5e-56
                 EEEEEEEETTBEHHHHHHHHHHHHHTTEEEEEEESS.TSEEEETTS.EEEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EE CS
   DJ-1_PfpI   1 kkvlvlladgvedvElivpvdvlkragikvdvvsvd.keevkgsrG.lkvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekgklv 97 
                 kk++vl++d++ed E+++p++++k ag++v +++++ +++vkg++G + v +d+++ddv+++e+Dal+lpGG + p++lr +e++v+++++f++ gk+v
  CTQ30137.1   3 KKIAVLITDDFEDSEFTSPAEAFKLAGHQVITIEKQaGKTVKGKQGeAAVAIDRAIDDVTPGEFDALLLPGGYS-PDQLRGDERFVTFTRDFVNGGKPV 100
                 79**********************************999*******999*************************.************************ PP

                 EEETTTHHHHHHTTTTTTSEE--SGGGHHHHHHTTSEE-SSSEEEETT.EEEESSGGGHHHHHHHHH CS
   DJ-1_PfpI  98 aaICagpqlLaaagvlkgrrvTsypavkdklekagakyvdkrvvvdgn.lvTsrgpgaaiefalell 163
                 +aIC+gpqlL++a+v++gr++T+++ +  ++++ag +++d++vvvd++ lvTsr+p+++++f++e l
  CTQ30137.1 101 FAICHGPQLLISADVIRGRKLTAVKPIVVDVKNAGGEFYDQEVVVDNEqLVTSRTPDDLPAFNREAL 167
                 **********************************************988**************9987 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.9e-07   0.00088      40      87 ..      63     113 ..      30     154 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.9e-07
                 HHSTSEEEEEEESSCTT...TTTHHHHHHHHCTSTS-EEEETHHHHHHHHH CS
      GATase  40 lknpdgilvsgGpgspg...vegkieaikearenkiPiLGICLGmQllaie 87 
                   ++d++l++gG    +    e  +++++ + + ++P++ IC G Qll+ +
  CTQ30137.1  63 PGEFDALLLPGGYSPDQlrgDERFVTFTRDFVNGGKPVFAICHGPQLLISA 113
                 4689********988887778888999999999**************9864 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.8e-06     0.011      33      88 ..      58     110 ..      42     120 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.8e-06
    GATase_3  33 kdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlqmL 88 
                  d+  + + d+++lpGg++  q       +++    +++++ g+pv++iC G q+L
  CTQ30137.1  58 IDDVTPGEFDALLLPGGYSPDQLRGD---ERFVTFTRDFVNGGKPVFAICHGPQLL 110
                 34444467**********97665554...5566666778889************99 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.9e-05     0.056      95     121 ..      87     113 ..      59     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
  Peptidase_C26  95 laLiraalergvPilgiCrGlqllnva 121
                    ++  r  ++ g+P+++iC G qll  a
     CTQ30137.1  87 VTFTRDFVNGGKPVFAICHGPQLLISA 113
                    5677888999*************9655 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.7e-05      0.08      33     101 ..      65     132 ..      28     155 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.7e-05
                 C-SEEEE-SS-HHHHHHHHHHTT-HHHHHHHHHTT.--EEEETHH.HHHHCCEE.TTBSS-SS--CCEEEE CS
         SNO  33 evdaliiPGGestamskliertglyedllefvknsekvvlGtCaG.lillskel.enelvktlellkvkvk 101
                 e dal++PGG s    +l     ++   ++fv+ + k+v+  C G  +l+s+++  + +   ++ + v+vk
  CTQ30137.1  65 EFDALLLPGGYSPD--QLRGDERFVTFTRDFVNGG-KPVFAICHGpQLLISADViRGRKLTAVKPIVVDVK 132
                 78********9985..6777777889999999777.********953556665514446666666666665 PP

>> GATase_5  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.6e-05      0.23      82     138 ..      90     145 ..      18     155 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.6e-05
    GATase_5  82 lekflnredtlaLGiCnGfqlLvklglvpggeieeaeksptltrNksgrfesrlvsv 138
                  ++f+n  ++ +++iC G qlL+  +++ g + +  +  +  ++N+ g f ++ v v
  CTQ30137.1  90 TRDFVNG-GKPVFAICHGPQLLISADVIRGRKLTAVKPIVVDVKNAGGEFYDQEVVV 145
                 3478887.999******************9777777777777889999998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1410.94
//
Query:       CTQ30138.1  [L=147]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1277.87
//
Query:       CTQ30139.1  [L=106]
Description: putative endonuclease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-14   52.8   0.0    4.6e-14   52.4   0.0    1.1  1  GIY-YIG   GIY-YIG catalytic domain


Domain annotation for each model (and alignments):
>> GIY-YIG  GIY-YIG catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   2.6e-18   4.6e-14       1      75 [.      14      85 ..      14      88 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 2.6e-18
                --EEEEEEETTT--EEEEEESSHHHHHHHHHHHHHHT--S-HS.STEEEEEEEE----HHHHHHHHHHHHHHTTS CS
     GIY-YIG  1 kggvYiirskenkliYvGstknlekRlkqHnagkkakytrkkgkkpfeliileifptksealelEkklikkyksn 75
                +++ Y+ir  +n l Y+G+t+++ +R++qH agk+ak+ r+  k++++l ++++   +s al+lE+++++ +k++
  CTQ30139.1 14 CWFLYLIRTADNRL-YTGITTDVPRRFRQHQAGKGAKALRG--KGDLQLAFSHEVGEHSLALRLEYRVKQLTKRE 85
                5999******9997.*************************8..****************************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       336  (0.0187406); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 835.42
//
Query:       CTQ30140.1  [L=167]
Description: putative acyltransferase with acyl-CoA N-acyltransferase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.1e-12   45.8   0.1    8.8e-12   45.3   0.1    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    2.8e-09   37.2   0.1    3.8e-09   36.8   0.1    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.9e-08   33.4   0.0    5.6e-08   32.9   0.0    1.2  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    2.5e-05   24.2   0.0    4.8e-05   23.3   0.0    1.5  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    0.00043   20.4   0.0    0.00088   19.4   0.0    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
      0.051   13.7   0.5       0.11   12.6   0.5    1.5  1  Acetyltransf_6   Acetyltransferase (GNAT) domain
       0.24   10.8   0.0       0.32   10.5   0.0    1.2  1  Acetyltransf_15  Putative acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.1   3.4e-15   8.8e-12       7      76 .]      45     124 ..      34     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 3.4e-15
                     EEEET.TEEEEEEEEEEES...TCTEE.....EEE-GGGTTSSHHHHHHHH.....TTSEEEEE.EEEETHHHHHHHHHHTTEEE CS
  Acetyltransf_7   7 Vaedd.gkivGfialslld...aeitr.....laVdpeyrgkGiGraLlea.....aekgiile.qlelnaekaikfYeklGFee 76 
                     Va dd g+++G++a+s+++   +e+ +     laVd+ yrg+GiGr+L+       +e g+    +++l +    ++Y+++GFe+
      CTQ30140.1  45 VATDDeGQVIGYVAFSPVAvegEELQWvglapLAVDERYRGQGIGRQLVYEgldslNEFGY--AaVVTLGD---PDLYRRFGFEP 124
                     56666699***********98744444777889***************9643343322564..33456644...67*******95 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.1   1.5e-12   3.8e-09      31     117 .]      40     122 ..      13     122 .. 0.74

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.5e-12
                     TTCEEEEEEETTEEEEEEEEEEEET..TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEE.EEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  31 eaegllvaeedgeliGfisllkipd..ekggvayieslaVspeyrgkGlGsaLlealeerareegikki.vlaveedndaairlYeklGF 117
                     ++ g ++  ++g++iG++ ++++    e+ + + +  laV++ yrg+G+G++L+ + ++ + e g+ ++  l   +       lY+++GF
      CTQ30140.1  40 ITLGVVATDDEGQVIGYVAFSPVAVegEELQWVGLAPLAVDERYRGQGIGRQLVYEGLDSLNEFGYAAVvTL--GD-----PDLYRRFGF 122
                     3334444777799************99888999999***********************8888899774233..33.....459988998 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   2.2e-11   5.6e-08      10     127 ..      11     124 ..       8     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.2e-11
                     HHHHHHHHHHHTT----H..HHHHHHHHHHTTSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHH CS
  Acetyltransf_9  10 ldevlellkyaFqdeespleeireyfrklleesrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlaraleemre 104
                      +++ +ll++ F+++ +++  ++   ++ l    v+   d+g+++g +a+ p+  +v G++l+  g++  av+  +rg+g+ ++L+ + l+ ++e
      CTQ30140.1  11 APGIDALLRRTFGRDAEAQ-LVHDLREDGLITLGVVATDDEGQVIGYVAFSPV--AVEGEELQWVGLAPLAVDERYRGQGIGRQLVYEGLDSLNE 102
                     5677789999999999985.2333444444455666667799********996..689************************************* PP

                     TT--EEEE--SSHHHHHTTT-EE CS
  Acetyltransf_9 105 egqplsllfPssipiYrrfGyei 127
                      g+  ++  +  +++YrrfG+e+
      CTQ30140.1 103 FGYAAVVTLGD-PDLYRRFGFEP 124
                     *********99.*********98 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.9e-08   4.8e-05      33     108 ..      44     124 ..      14     131 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.9e-08
  Acetyltransf_10  33 llvaeeggkivGvi.....elrdgs........hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFka 108
                      +++ +++g+++G++     +              ++ l+Vd+ yrgqGig++L+ + ++ +++ g++  +t+       ++Y+++GF++
       CTQ30140.1  44 VVATDDEGQVIGYVafspvA----VegeelqwvGLAPLAVDERYRGQGIGRQLVYEGLDSLNEFGYAAVVTLG----DPDLYRRFGFEP 124
                      45677889999999444333....2445688999999********************9999877777444443....346888888876 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.4e-07   0.00088       8      62 ..      50     109 ..      44     110 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3.4e-07
  Acetyltransf_CG   8 egeevafleYe.....vrkeg..vldfthTeVpeelrGkGiAkkLvkaalddareeglkvvp 62 
                      eg+ ++++ ++      +  +   + +    V+e++rG+Gi+++Lv + ld   e g+  v+
       CTQ30140.1  50 EGQVIGYVAFSpvaveGE--ElqWVGLAPLAVDERYRGQGIGRQLVYEGLDSLNEFGYAAVV 109
                      566666666655543222..13255666778********************99998887665 PP

>> Acetyltransf_6  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.5   4.4e-05      0.11      53     135 ..      22     112 ..      15     119 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.4e-05
  Acetyltransf_6  53 ltraflrdllaalaargalrlyvlrldgr.....pvAvalglrsgdrlyywlggy...dpelaklspgllllweliedaaeeGlrrfdlgg 135
                     + r+  ++l+++l ++g + l v+  d++     +vA+  + + g+ l +   +    d+++++ ++g+ l++e ++ + e G++ +  +g
      CTQ30140.1  22 FGRDAEAQLVHDLREDGLITLGVVATDDEgqvigYVAFSPVAVEGEELQWVGLAPlavDERYRGQGIGRQLVYEGLDSLNEFGYAAVVTLG 112
                     556666899****************998888888999999999999776654443346***********************9988665554 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00012      0.32      78     102 ..      77     101 ..      64     126 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
  Acetyltransf_15  78 lyvsekyrgkGlakklLeeslkelk 102
                      l v+e+yrg+G+ ++l++e l++l+
       CTQ30140.1  77 LAVDERYRGQGIGRQLVYEGLDSLN 101
                      789****************999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1370.47
//
Query:       CTQ30141.1  [L=174]
Description: putative lipid carrier protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-17   62.5   0.0    6.3e-17   61.9   0.0    1.2  1  SCP2          SCP-2 sterol transfer family
    0.00028   21.1   0.0    0.00063   20.0   0.0    1.5  2  Alkyl_sulf_C  Alkyl sulfatase C-terminal
  ------ inclusion threshold ------
      0.013   16.3   0.2       0.02   15.7   0.2    1.3  1  MDMPI_C       MDMPI C-terminal domain


Domain annotation for each model (and alignments):
>> SCP2  SCP-2 sterol transfer family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   1.1e-20   6.3e-17      10     101 .]      43     133 ..      32     133 .. 0.92

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 1.1e-20
                 HHHHHHHHCCH-E.EEEEEECTC.TEEEEEETTSTEEESSCTTBS-SEEEEEEHHHHHHHHCTSS-HHHHHHTTSSEEEC-HHHHHHHHHHHH CS
        SCP2  10 dpekkealkklag.vlrfdltdlkgsltldlkegqldvaakdegkadvtlslsledllelaegklnpqkafmqgkLkieGDielaqkleallk 101
                 ++ ++++l+ l+g +l ++++d ++ ++ ++ +g+l v++++  +adv +s++++dll +a +k +p+++f+q++L ieGD+el++ +++l++
  CTQ30141.1  43 QALAEGELEFLEGrWLSIHVRDIGLLWYTSVVDGRLVVSQQA--DADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMD 133
                 3467999****************99*************8885..9*********************************************996 PP

>> Alkyl_sulf_C  Alkyl sulfatase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.84     5e+03      73     100 ..      27      52 ..      24      57 .. 0.71
   2 !   20.0   0.0   1.1e-07   0.00063      38     116 ..      60     134 ..      53     138 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.84
                   EE-HHHHHHHHTTSS-HHHHHHTTTEEE CS
  Alkyl_sulf_C  73 tltreqLvalllgkatlgkevaagklki 100
                    l+r+ L+++l+   ++ +++a+g+l+ 
    CTQ30141.1  27 ALKRQVLEQVLS--WQFRQALAEGELEF 52 
                   578888888886..45777777777765 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 1.1e-07
                   EEETTTTEEEEEEEETTEEEE.ECT---TTSSEEEEE-HHHHHHHHTTSS-HHHHHHTTTEEEEE-TCHHHHHHCTB-- CS
  Alkyl_sulf_C  38 lvvtDvdekyllrlsngvLthtrkaaqaddadltvtltreqLvalllgkatlgkevaagklkieGdaealakllsllde 116
                   ++v D++  + +++ +g L+  +   q++dad++++ + ++L+ ++++k+ +++++ + +l ieGd+e    + +l+d 
    CTQ30141.1  60 IHVRDIGLLWYTSVVDGRLVV-S---QQADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDA 134
                   678899999999999999999.4...4599************************************9987666666665 PP

>> MDMPI_C  MDMPI C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.2   3.4e-06      0.02      39      88 ..      71     124 ..      28     126 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.4e-06
     MDMPI_C  39 hatdggrarlalwadg.........adatvrGtaadlllllwGRlspddt.....levdGdral 88 
                 +  ++          g         ad++++++a+dll+ +++  +pd+      l ++Gd++l
  CTQ30141.1  71 TSVVD----------GrlvvsqqadADVSFSADASDLLMIAARKQDPDTLffqrrLVIEGDTEL 124
                 22222..........1333444445******************9999988*****999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1315.67
//
Query:       CTQ30142.1  [L=331]
Description: peptidase (collagenase-like) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-66  224.5   0.0    1.3e-66  224.1   0.0    1.2  1  Peptidase_U32    Peptidase family U32
  ------ inclusion threshold ------
      0.077   12.9   1.2        7.6    6.5   0.2    2.4  2  DNAPolymera_Pol  DNA polymerase catalytic subunit Pol
       0.16   11.4   1.4       0.21   11.0   0.5    1.7  2  AP_endonuc_2     Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> Peptidase_U32  Peptidase family U32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.1   0.0   2.2e-70   1.3e-66       3     232 ..      76     330 ..      74     331 .] 0.95

  Alignments for each domain:
  == domain 1  score: 224.1 bits;  conditional E-value: 2.2e-70
  Peptidase_U32   3 klrkyleklaelgvdavivqDpgvlelareeapelelhlStqanitnseavrflkel.GasrvvlaRElsleeikaikekvpdvelEvfvhGalcv 97 
                    +++++++ +a+lg+da+i++D+++le+a e++p++e h+S+qa++tn ea+rf++++ ++ rvvl+R ls++++k++++++  v lEvf +G+lc+
     CTQ30142.1  76 RWQRAVDMAAQLGADALILADIAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNfDVARVVLPRVLSIHQVKQLARAT-PVPLEVFAFGSLCI 170
                    688999*************************************************999***********************.8************* PP

  Peptidase_U32  98 aysGrcllssylsgrsan.rgecaqpcrldyr.............lieekekgeeepieedekgt........yllspkd.lclieelpelleaGv 170
                    + +Grc+lssyl+g+s+n  g+c+ +   +++             li++ ++ge++++++ +kg+        + l++ + l+++e lpel++a++
     CTQ30142.1 171 MAEGRCYLSSYLTGESPNtVGACSPARFVRWQqtpqglesrlnevLIDRYQDGENAGYPTLCKGRylvdgeryHALEEPTsLNTLELLPELMAANI 266
                    ***********************98876677777***************************************88887777*************** PP

  Peptidase_U32 171 dslKIeGRmkspeyvatvvrvYreaidallagr..eevkeelkeeleklanrgltsgfllgrke 232
                    +s+KIeGR++sp yv +v++v+r+aid++ a++  +  +++++e l  ++++  t+  +++rk+
     CTQ30142.1 267 ASVKIEGRQRSPAYVTQVAKVWRQAIDRCKADPqnFVPQSAWMETLGAMSEGTQTTLGAYHRKW 330
                    *********************************9777889**********99999999888887 PP

>> DNAPolymera_Pol  DNA polymerase catalytic subunit Pol
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2    0.0013       7.6      25      36 .]      58      69 ..      56      69 .. 0.87
   2 ?    4.9   0.0    0.0041        25      15      34 ..     116     135 ..     111     136 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0013
  DNAPolymera_Pol 25 RRkLhrAFdiLa 36
                     RRkLh+A  + a
       CTQ30142.1 58 RRKLHIAINTFA 69
                     9******98865 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0041
  DNAPolymera_Pol  15 igaGieaEETRRkLhrAFdi 34 
                      + a ++ EE  R  hr Fd+
       CTQ30142.1 116 VQASATNEEAIRFYHRNFDV 135
                      77889*************96 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   3.5e-05      0.21       2      90 ..      14      95 ..      13     146 .. 0.72
   2 ?   -3.4   0.0      0.89   5.3e+03     106     120 ..     281     295 ..     271     298 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.5e-05
                  HHHHHCT-SEEEEECCTCSHHHHC.........HHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEE CS
  AP_endonuc_2  2 aaaaeaGfdgvElfgrdlvpvsel.........sdeelrelrkaldelglriaslslftrfgypdederearreesvdalkraielaaaLGapllvlh 90
                  +aa e G+d+v + ++d+ ++++           +e++  +++  ++l++    +++f+++ +              ++++ra+++aa+LGa+ l+l 
    CTQ30142.1 14 KAAIENGADAVYIGLKDDTNARHFaglnftekkLQEAVSFVHQHRRKLHIA---INTFAHPDG-------------YARWQRAVDMAAQLGADALILA 95
                  778889999999999999999875666663333333333333333333333...555555555.............899***************9986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.89
                   HHHHHHHHHHHHHHH CS
  AP_endonuc_2 106 werlaeslneladya 120
                   + ++a+++++++d +
    CTQ30142.1 281 VTQVAKVWRQAIDRC 295
                   556777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2362.40
//
Query:       CTQ30143.1  [L=292]
Description: protease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-12   45.8   0.0    5.6e-12   45.3   0.0    1.2  1  Peptidase_U32  Peptidase family U32


Domain annotation for each model (and alignments):
>> Peptidase_U32  Peptidase family U32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   3.1e-16   5.6e-12      20     138 ..      93     211 ..      79     252 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 3.1e-16
  Peptidase_U32  20 ivqDpgvlelareeapelelhlStqanitnseavrflkelGasrvvlaRElsleeikaikekvp......dvelEvfvhGalcvaysGrcllssyl 109
                      +D+gv++l+ e+  +l++ +    n++n+ ++r+l+++G+ r +++ Els + ++++ ++++      + e+Ev+ +G l +ays rc++ +  
     CTQ30143.1  93 EASDLGVVNLCAER--KLPFVAGHALNCYNAVTLRLLRKQGMVRWCMPVELSRDWLANLLTQCEelgirnQFEVEVLSYGHLPLAYSARCFTARS- 185
                    579***********..************************************************9*99999********************9998. PP

  Peptidase_U32 110 sgrsanrgecaqpcrldyrlieekekgee 138
                    ++r   ++ec   c  +y   ++  ++e+
     CTQ30143.1 186 EDRP--KDECETCC-IKYPTGRSMLSQEN 211
                    6666..55554433.34443344333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2253.79
//
Query:       CTQ30144.1  [L=335]
Description: putative enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-35  123.2   0.3    1.9e-34  119.6   0.3    1.9  1  Bac_luciferase  Luciferase-like monooxygenase


Domain annotation for each model (and alignments):
>> Bac_luciferase  Luciferase-like monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.3     1e-38   1.9e-34       4     310 ..       9     302 ..       6     306 .. 0.79

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 1e-38
  Bac_luciferase   4 gvflptrqggalgaasaslrylvelaraaEelGfdavwvaehhggpgga.ldaftllaalaaaTerirlgtavtplytrhPavlAqqaatLdhls 97 
                     +v+ ++ ++ +++a++ ++ + ++lar+aE+ G+++ w+aehh++ g a + + +l+++laa T+++ lg++ ++l++++P+v+A+q+ tL+ l+
      CTQ30144.1   9 SVLDLAPIPQGSSAKE-AFTHSLDLARLAESRGYHRYWLAEHHNMVGIAsAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLY 102
                     5566666666666677.9**************************9998899999***************************************** PP

  Bac_luciferase  98 gGRfglglgt..ggpaveerrfGv....dhderyarlrEfvevlrrlwrgeevdfeGeffsvkgalllprpgqgp.iPvyvaaaspaglelaarh 185
                     +GR++lglg+  g++++ +r+  +    d d   +  +E v+++ +                 +++++p pg g+ iPv++ ++s  +++laa+ 
      CTQ30144.1 103 PGRIDLGLGRapGSDQPTMRALRRhmsgDVDNFPRDVAELVDWFDARD--------------PNPHVRPVPGYGErIPVWLLGSSLYSAQLAAQL 183
                     **********88888888887765667799999999999999776644..............45556777755557******************* PP

  Bac_luciferase 186 adglllag.eppeeaaelierlragaaeagrdpadirvgisltvivadteeeAraea....raliagldfyaldsegagreaeaa...eiqeeed 272
                     + ++ +a+ + p+ + +++  +r+  +   r  ++++ ++ + +i+ad++ +A+  +    +a++        + ++ + ++      + ++ ++
      CTQ30144.1 184 GLPFAFAShFAPDMLFQALHLYRSNFKPSAR-LEKPYAMVCINIIAADSNRDAEFLFtsmqQAFV--------KLRRGETGQLPPpveNMHQLWS 269
                     ************************8888888.88********************99966644444........2222222211111113344444 PP

  Bac_luciferase 273 anlwagaadavpdelvaatalvGtpeqvaerlaa.yaea 310
                     a ++ g+++a+      ++ lvG+   v+  l+  ++e+
      CTQ30144.1 270 ASEQYGVQQAL------SMSLVGDKTKVRHGLESiLRET 302
                     44444444444......5555888888888777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2533.49
//
Query:       CTQ30145.1  [L=414]
Description: tryptophan transporter of high affinity [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     2e-149  497.9  26.3   2.3e-149  497.7  26.3    1.0  1  Trp_Tyr_perm  Tryptophan/tyrosine permease family
    1.1e-06   27.6  17.5    1.7e-06   27.0  17.5    1.3  1  Aa_trans      Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Trp_Tyr_perm  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  497.7  26.3  2.6e-153  2.3e-149       2     394 .]      10     402 ..       9     402 .. 0.99

  Alignments for each domain:
  == domain 1  score: 497.7 bits;  conditional E-value: 2.6e-153
  Trp_Tyr_perm   2 tksllggvlliagtviGaGmlalPvatagagfipsllllilswvlmlasgllllEvllaakeeasfttlakkllGkkgniivalvllfllyiLlvAy 98 
                   ++sl+ggv++i+gt+iGaGm++lPv+++ga+f++sl +l+++w++ml+sgl++lE++l+++ ++sf+t++k+llGk +n++++++++f+lyiL++Ay
    CTQ30145.1  10 RPSLFGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSLAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNLVNGVSIAFVLYILTYAY 106
                   689********************************************************************************************** PP

  Trp_Tyr_perm  99 isggGsilselleeasgialsarlavliftlvlgalvvlstkavdrinrvllflklvafvlllalllskvksdvLls.aksdtskvslvlsalPvll 194
                   is++Gsil+++++e s ++++ar+a + f+l+++++v++stkav+r+++++l +k+++f+l++ +ll +v+  +L++ a++++s+++++l++lP++l
    CTQ30145.1 107 ISASGSILHHTFSELS-LKVPARAAGFGFALLVAFIVWMSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVEPTTLFNvAEKNASYAPYLLMTLPFCL 202
                   ***************9.9***********************************************************9999**************** PP

  Trp_Tyr_perm 195 lsfGFhgivpslvkyldknvkkvkkailiGtliaLvlyllWelivlGnlpreelariiakggnldtlveallelleskslelavelFsflAlatSfl 291
                   +sfG+hg+vpsl+ky++k+ +++ +++ +Gtl+aL ly++W l+++Gn+pr++++ i +kggn+d+lv+al+++l+s+sl+l++ +Fs++A+a+Sfl
    CTQ30145.1 203 ASFGYHGNVPSLMKYYGKDPRTIIRCLTYGTLLALGLYVVWLLVTMGNIPRPQFIDIAQKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFL 299
                   ************************************************************************************************* PP

  Trp_Tyr_perm 292 GvalglfdyladlfklsdskkgrlklglvtflpPlvlalffPegflkalgyAGlaatilavilPallawkarkkkknapyrvlgGnkllllvlligi 388
                   Gv+lglfdyladlf ++ds+ gr+k++l+tf+pP++  l+ P gfl+a+gyAGlaati+a+i+Palla ++rk++ + ++rv+gG  +++l+ll+g 
    CTQ30145.1 300 GVTLGLFDYLADLFGFDDSAMGRFKTALLTFIPPMIGGLVKPDGFLYAIGYAGLAATIWAAIVPALLAHASRKRFGSPQFRVWGGTPMIVLILLFGL 396
                   ************************************************************************************************9 PP

  Trp_Tyr_perm 389 vlilvq 394
                    +++v+
    CTQ30145.1 397 GNAIVH 402
                   999886 PP

>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0  17.5   1.9e-10   1.7e-06       6     242 ..      14     240 ..       9     246 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.9e-10
    Aa_trans   6 lsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvsylil 104
                 + +v+ +  +i+GaG+++LP+ ++ +  + +l++l++ +++ l + l+++++   +   +  +s+ ++ + llG+ + l+ +++i++ l   + +y+ +
  CTQ30145.1  14 FGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSLAALVFTWFCMLHSGLMILEANLNY---RIGSSFDTITKDLLGKGWNLVNGVSIAFVLYILTYAYISA 109
                 567888889*******************************************9966...599************************************* PP

    Aa_trans 105 igdllpaifesffdtlllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkasklkglflaigiivF 203
                  g+ l + f+ ++ + + + + f ++  +++i+    +  s ++ + l a v++++  +++     +  +++l +v+e+ +   s    l+++++    
  CTQ30145.1 110 SGSILHHTFSELSLKVPARAAGFGFALLVAFIVWMSTKAVSRMTAIVLGAKVITFF--LTFGSLLGHVEPTTLFNVAEKNA---SYAPYLLMTLPFCLA 203
                 ***********887789999999999999999988888888888888888888876..56666666777778888888877...55557********** PP

    Aa_trans 204 Aftghavlleiqnelkdpskfkkmtkvlllsiilatvly 242
                 +f++h +++++++   + +   ++ ++l   ++la  ly
  CTQ30145.1 204 SFGYHGNVPSLMKYYGKDPR--TIIRCLTYGTLLALGLY 240
                 ***********987766333..35566666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2969.34
//
Query:       CTQ30146.1  [L=87]
Description: exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1292  (0.072062); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 687.91
//
Query:       CTQ30147.1  [L=643]
Description: ATP-dependent RNA helicase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-51  174.5   0.0    5.5e-51  172.8   0.0    1.8  2  DEAD        DEAD/DEAH box helicase
    4.6e-31  107.4   0.0    4.2e-29  101.1   0.1    2.7  3  Helicase_C  Helicase conserved C-terminal domain
    1.3e-20   73.1   0.0    3.1e-20   71.9   0.0    1.7  1  DbpA        DbpA RNA binding domain
    4.4e-17   62.4  44.2    4.4e-17   62.4  44.2    2.7  2  DEADboxA    Cold shock protein DEAD box A
    0.00012   22.1   0.0    0.00035   20.6   0.0    1.7  2  ResIII      Type III restriction enzyme, res subunit
     0.0066   15.8   0.5      0.014   14.7   0.0    1.7  2  CMS1        U3-containing 90S pre-ribosomal complex subunit
  ------ inclusion threshold ------
      0.029   14.1   0.0      0.065   13.0   0.0    1.5  1  AAA_30      AAA domain
       0.13   12.1   0.0       0.48   10.2   0.0    1.9  2  DRTGG       DRTGG domain
       0.99    9.7   3.1        3.8    7.8   0.2    3.1  3  AAA_22      AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.8   0.0   2.8e-54   5.5e-51       2     174 ..      31     195 ..      30     197 .. 0.95
   2 ?   -1.4   0.0      0.89   1.8e+03      80     105 ..     277     303 ..     239     316 .. 0.67

  Alignments for each domain:
  == domain 1  score: 172.8 bits;  conditional E-value: 2.8e-54
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldngvd 99 
                 +iQae+ip++l+g+dvl+ a+TGsGKT+af++p+l+++    + ++p++l+++PtreLa q+++ +++f k+  +++v++++gg++++ ql++l++g++
  CTQ30147.1  31 PIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--PELRAPQILVLAPTRELAVQVAEAMTEFSKHmRGVNVVALYGGQRYDVQLRALRQGPQ 127
                 8************************************93..79****************************9455************************ PP

                 EEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 ivvgtpgrl+d+l++g+l+ls+++ lVlDEad++l +gf +++++i++q+       ++ +q+ ++SAT+p+ ++
  CTQ30147.1 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQI-------PEGHQTALFSATMPEAIR 195
                 **************************************************.......45567*********8776 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.89
                 EEETTSSHHHHHHHHHTT.CSEEEEEH CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxx RF
        DEAD  80 liiggvaardqlskldng.vdivvgtp 105
                   +++  +++ l++l+ g +di+++t 
  CTQ30147.1 277 GDMNQALREQTLERLKDGrLDILIATD 303
                 335566678888889766799999985 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.054   1.1e+02      10      61 ..      68     124 ..      60     132 .. 0.75
   2 ?   -3.7   0.0       7.5   1.5e+04      40      54 ..     180     194 ..     167     214 .. 0.50
   3 !  101.1   0.1   2.1e-32   4.2e-29       2     111 .]     232     340 ..     231     340 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.054
                 HHHTTTTSEEEEEESSHH...HHHH....HHHHHHHTTSTEEEESTTSTHHHHHHHHHH CS
  Helicase_C  10 lkleeeggkilifvntid...rlek....vklllekkgikvavlhgelpqnereeileq 61 
                 ++ e +  +il+ ++t++   +       +++ ++ +g++v++l+g    + ++++l+q
  CTQ30147.1  68 IDPELRAPQILVLAPTRElavQ--VaeamTEFSKHMRGVNVVALYGGQRYDVQLRALRQ 124
                 456678899*********7553..2335555666666*********9999999888887 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.5
                 TSTEEEESTTSTHHH CS
  Helicase_C  40 gikvavlhgelpqne 54 
                 g ++a + +++p   
  CTQ30147.1 180 GHQTALFSATMPEAI 194
                 333333334333333 PP

  == domain 3  score: 101.1 bits;  conditional E-value: 2.1e-32
                 HHHHHHHHHHHTTTTSEEEEEESSHH.HHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntid.rlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 k eal+++l + e+ + ++ifv+t++ +le ++ l e++g+++a+l+g+++q  re++le+ ++g+ d+Liatdva+rG+d+++++lV+n+d+p + +s
  CTQ30147.1 232 KNEALVRFL-EAEDFDAAIIFVRTKNaTLEVAEAL-ERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSES 328
                 778899999.8999999*********866545555.999************************************************************ PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y++riGRtgRag
  CTQ30147.1 329 YVHRIGRTGRAG 340
                 **********97 PP

>> DbpA  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   1.6e-23   3.1e-20       2      71 ..     491     560 ..     490     561 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 1.6e-23
                 EEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT-HHHHHHHHTT--SSS----EE CS
        DbpA   2 lfinvGkkdklrpgdivgaiakeaglsgkdIGkIdildkfSfvevpkekaeevlkalkkkkikGrkvrve 71 
                 ++i+vG+ d+++ ++ivgaia+e+++s+++IG+I+++ ++S++e+pk+++ evl+++ +++i +++++++
  CTQ30147.1 491 YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQ 560
                 89*****************************************************************985 PP

>> DEADboxA  Cold shock protein DEAD box A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.8  19.3         9   1.8e+04      23      66 ..     448     487 ..     442     488 .. 0.71
   2 !   62.4  44.2   2.2e-20   4.4e-17       1      67 []     574     643 .]     574     643 .] 0.98

  Alignments for each domain:
  == domain 1  score: -10.8 bits;  conditional E-value: 9
    DEADboxA  23 grrsfsgerreggrafsGerrdGqraPrrDdasaPagrrrfgGD 66 
                 +rr+f  +r +      G+r   +r+Pr D +  P+  rr  GD
  CTQ30147.1 448 PRREF-RDRDDRFDR-RGDRN--DRGPRGDREDRPKRERRDVGD 487
                 67888.555554422.46665..489**999999*998887787 PP

  == domain 2  score: 62.4 bits;  conditional E-value: 2.2e-20
    DEADboxA   1 ggerrgGGrgfgGerreGgraegrrsfsgerreggra....fsGerrdGqraPrrDdasaPa.....grrrfgGDa 67 
                 ggerr+GGrgfgGerreGg     r+f+gerreggr+    fsGerr+G raPrrDdasaP+     grrrfgGDa
  CTQ30147.1 574 GGERREGGRGFGGERREGG-----RGFGGERREGGRGegrrFSGERREG-RAPRRDDASAPRrddsaGRRRFGGDA 643
                 89****************6.....*************************.***************999*******8 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.7e-07   0.00035      31     141 ..      50     158 ..      28     192 .. 0.73
   2 ?   -2.3   0.0         2   3.9e+03      58     113 ..     347     412 ..     337     434 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.7e-07
                 ESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--........-SEEEEEHHHHHHTH........ CS
      ResIII  31 maTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke.igkkvsgdkkka.kekdstnkkilvttiqsldadseeeeeese 126
                 + TG+GKT    + l  ++  + +  ++l+l+p+++l  q  e++++f++  +   +   + g++++   +  ++  +i+v t  +l  ++     ++ 
  CTQ30147.1  50 AQTGSGKTAAFsLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVnVVALYGGQRYDVqLRALRQGPQIVVGTPGRLLDHL-----KRG 143
                 57******9988************************************9988655666667777777655666777788888887777777.....344 PP

                 HHHTTT-SEEEEETG CS
      ResIII 127 ellrdrfdviiiDEa 141
                 +l+ ++   ++ DEa
  CTQ30147.1 144 TLDLSKLSGLVLDEA 158
                 444444444555555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2
                 EEEESSH.HHHHHHHHHGGGGTGG....GEEEESSS-B--................-SEEEEEHHH CS
      ResIII  58 lflvprk.slleqtleefkkflseaykeigkkvsgdkkka.........kekdstnkkilvttiqs 113
                 lf+ +r+  ll   ++++k +++e    + + +s+++ ++         +++d ++ + l+++iq 
  CTQ30147.1 347 LFVENRErRLLRNIERTMKLTIPEVELPNAELLSKRRLEKfaakvqqqlESSDLDQYRALLAKIQP 412
                 444444445666666667666666666666666666665555555555556666666666666664 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.1e-06     0.014     127     209 ..      75     157 ..      69     197 .. 0.80
   2 ?   -3.3   0.4       2.2   4.4e+03      11      36 ..     464     488 ..     455     502 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.1e-06
        CMS1 127 PelLvltlaalRaaDlaralkklq..tkdskvakLFakhikleesvtylkksrigiavGtpgRildLleeeslsvdeLkrivlDa 209
                 P++Lvl+ +   a+ +a a+ ++    ++ +v  L++   + + ++  l++    i vGtpgR+ld l+ ++l +++L  +vlD 
  CTQ30147.1  75 PQILVLAPTRELAVQVAEAMTEFSkhMRGVNVVALYGGQ-RYDVQLRALRQGP-QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDE 157
                 788888877777777777777765446777777787754.6666676776653.589**************************96 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.2
        CMS1  11 enkekgkkkksekkRskkkerkkgkl 36 
                 + ++ g +   ++ R k+++r+ g++
  CTQ30147.1 464 DRNDRGPRGD-REDRPKRERRDVGDM 488
                 4555666655.456888888888877 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.3e-05     0.065       5      97 ..      32     158 ..      29     185 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.3e-05
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKtta..lkalreaweaa.ggrviglAptgkaAkvLaeelg.....ieastiakllkrlk.............. 81 
                  Qa+ + +ll ++d  ++  +  G+GKt a  l  l+++  +    ++++lApt + A ++ae++      +++ ++  l   ++              
  CTQ30147.1  32 IQAECIPHLLDGRD--VLGMAQTGSGKTAAfsLPLLNNIDPELrAPQILVLAPTRELAVQVAEAMTefskhMRGVNVVALYGGQRydvqlralrqgpqi 128
                 59999999999998..8899999*****76225568999999988***************998554222223444444444444455555444455555 PP

      AAA_30  82 ..............grarlepgtllivDEa 97 
                               g+ +l++ + l+ DEa
  CTQ30147.1 129 vvgtpgrlldhlkrGTLDLSKLSGLVLDEA 158
                 555555555555454455555566666665 PP

>> DRTGG  DRTGG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00024      0.48      27      68 ..      90     132 ..      83     140 .. 0.85
   2 ?   -2.9   0.0         3     6e+03      86     103 ..     249     266 ..     230     267 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00024
                 -SS-HHHHHHHHHT.SEEEEEETT-HHHHHHHTT-TEEEEEEE CS
       DRTGG  27 gamsvenmlerlke.gdlvivpGDRediqlaaleagiaalilT 68 
                 +a ++ ++ ++++  + +   +G R+d+ql al +g ++++ T
  CTQ30147.1  90 VAEAMTEFSKHMRGvNVVALYGGQRYDVQLRALRQGPQIVVGT 132
                 5788899999999999999***************997777755 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3
                 --EEE-SS-HHHHHHHHH CS
       DRTGG  86 lpvlsveldtfttakrin 103
                 +  ++++  t+++a++++
  CTQ30147.1 249 IIFVRTKNATLEVAEALE 266
                 556788889999998887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2    0.0019       3.8      74     133 ..     132     193 ..      47     197 .. 0.59
   2 ?   -2.5   0.0       2.9   5.8e+03      61      90 ..     262     295 ..     245     306 .. 0.59
   3 ?    0.3   0.1      0.39   7.8e+02      46      82 ..     372     410 ..     341     440 .. 0.48

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0019
      AAA_22  74 sseellealeqalraravielliiDEaqh.lrseealeeLrsllnl..srkgvqliLvGtpel 133
                 +  +ll++l +   + ++ + l++DEa+  l ++  +e++ +++    + ++++l+ + +pe+
  CTQ30147.1 132 TPGRLLDHLKRGTLDLSKLSGLVLDEADEmL-RMGFIEDVETIMAQipEGHQTALFSATMPEA 193
                 445566555555555555899********77.8888888866666557788888877777754 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.9
      AAA_22  61 lralglelka....erlsseellealeqalrara 90 
                 ++al++++ +    +++ +++l+e+  + l++ +
  CTQ30147.1 262 AEALERNGYNsaalNGDMNQALREQTLERLKDGR 295
                 4455544444444444445555555555555444 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.39
      AAA_22  46 tlpsst.sskdllrellralglelka.erlsseelleal 82 
                 +lp+ +  sk  l++++ +++++l++   ++ ++ll+++
  CTQ30147.1 372 ELPNAElLSKRRLEKFAAKVQQQLESsDLDQYRALLAKI 410
                 444444433333344444444443333111222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 4444.02
//
Query:       CTQ30148.1  [L=294]
Description: lipoprotein precursor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-15   53.9  13.5    5.7e-05   22.9   0.0    4.8  4  TPR_2     Tetratricopeptide repeat
    4.5e-14   51.6   7.7    1.2e-05   24.9   0.0    4.5  4  TPR_1     Tetratricopeptide repeat
    6.8e-11   41.7   2.8    0.00012   21.7   1.2    4.2  4  TPR_11    TPR repeat
    2.5e-10   40.3   9.2    1.7e-05   24.8   0.9    2.7  2  TPR_9     Tetratricopeptide repeat
    3.4e-10   39.3   0.9      0.035   14.3   0.0    3.9  3  TPR_8     Tetratricopeptide repeat
    4.3e-08   33.3   9.1     0.0028   18.4   0.0    5.1  5  TPR_14    Tetratricopeptide repeat
    2.3e-06   28.0   3.4    2.8e-05   24.5   0.1    3.4  4  TPR_19    Tetratricopeptide repeat
    4.3e-06   27.3  16.3      0.002   18.7   2.4    3.7  3  TPR_16    Tetratricopeptide repeat
    7.9e-05   22.8   7.8        1.5    9.4   0.0    5.0  5  TPR_17    Tetratricopeptide repeat
     0.0013   18.9  14.8       0.22   11.8   0.6    3.8  3  TPR_12    Tetratricopeptide repeat
     0.0074   15.6   0.6        1.5    8.0   0.1    2.3  2  TAtT      TRAP transporter T-component
  ------ inclusion threshold ------
      0.016   15.2   8.1         11    6.3   0.1    4.5  4  TPR_7     Tetratricopeptide repeat
      0.031   14.2   7.7        3.7    7.5   0.0    4.3  4  TPR_10    Tetratricopeptide repeat
      0.037   14.7  13.3         17    6.3   0.0    5.5  5  TPR_6     Tetratricopeptide repeat
      0.038   13.7   1.0       0.22   11.2   0.2    2.4  2  RPN7      26S proteasome subunit RPN7
      0.055   13.6   0.0        0.1   12.8   0.0    1.3  1  IF-2      Translation-initiation factor 2


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   6.7e-06    0.0075       1      33 [.      62      94 ..      62      95 .. 0.96
   2 !   22.9   0.0   5.1e-08   5.7e-05       1      34 []      96     129 ..      96     129 .. 0.95
   3 !    7.4   1.1    0.0046       5.2       2      34 .]     131     163 ..     130     163 .. 0.92
   4 !   13.9   0.0   4.1e-05     0.046       2      30 ..     235     263 ..     234     267 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.7e-06
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldPn 33
                a++ly++G +y  lg  + A+++f +Al++ P+
  CTQ30148.1 62 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD 94
                678***************************997 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 5.1e-08
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +e+ ++lG  + ++g+++ A eaf+ +leldP++
  CTQ30148.1  96 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 129
                 6899****************************85 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0046
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +a+ n+G a+y+ g+ + A +++ +  + dPn+
  CTQ30148.1 131 YAHLNRGIALYYGGRAKLAQDDLLAFYQDDPND 163
                 699******************999999999986 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 4.1e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAlel 30 
                 e +++lG+ y+ lgd + A ++f+ A++ 
  CTQ30148.1 235 ETNFYLGKYYLSLGDKDSATALFKLAVAN 263
                 678*********************99875 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     1e-06    0.0012       1      33 [.      62      94 ..      62      95 .. 0.96
   2 !   24.9   0.0   1.1e-08   1.2e-05       2      34 .]      97     129 ..      96     129 .. 0.95
   3 ?    2.7   0.6      0.11   1.3e+02       3      20 ..     132     149 ..     131     153 .. 0.79
   4 !    6.9   0.1    0.0052       5.8       5      29 ..     238     262 ..     234     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1e-06
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALelnPn 33
                a+ ly +G++y +lg    A  ++++AL ++P+
  CTQ30148.1 62 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD 94
                6789****************************8 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 1.1e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 ++++ lG  + + g++d A e+++ +Lel+P++
  CTQ30148.1  97 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 129
                 789****************************97 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHTT-HHHH CS
       TPR_1   3 alynlGnayfklgkydeA 20 
                 a+ n+G a+++ g+ + A
  CTQ30148.1 132 AHLNRGIALYYGGRAKLA 149
                 99********98876666 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0052
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                 + lG  y++lg+ d A + ++ A+ 
  CTQ30148.1 238 FYLGKYYLSLGDKDSATALFKLAVA 262
                 679***************9999876 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.1   1.2e+03      28      41 ..      62      75 ..      58      76 .. 0.76
   2 !   14.2   0.0   2.3e-05     0.026      13      37 ..      81     104 ..      79     108 .. 0.89
   3 !   21.7   1.2   1.1e-07   0.00012       5      39 ..     107     141 ..     105     143 .. 0.96
   4 ?    1.6   0.0       0.2   2.3e+02      24      37 ..     249     262 ..     249     263 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.1
      TPR_11 28 aeayynLGlayykq 41
                a ++y++G++y  +
  CTQ30148.1 62 AQLLYERGVLYDSL 75
                77899999999655 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.3e-05
      TPR_11  13 AieaYkkAlkldPdnaeayynLGla 37 
                 A +++++Al+++Pd +e+++ LG +
  CTQ30148.1  81 ARNDFSQALAIRPDMPEVFNYLG-I 104
                 78999******************.4 PP

  == domain 3  score: 21.7 bits;  conditional E-value: 1.1e-07
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaeayynLGlayy 39 
                 ++ G++++A ea+   l+ldP++  a++n+G a+y
  CTQ30148.1 107 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 141
                 789******************************98 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.2
      TPR_11  24 dPdnaeayynLGla 37 
                 d d+a+a+++L++a
  CTQ30148.1 249 DKDSATALFKLAVA 262
                 789********998 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.8   8.6e-07   0.00096       7      64 ..      40      97 ..      34      99 .. 0.90
   2 !   24.8   0.9   1.6e-08   1.7e-05       6      61 ..     107     168 ..     102     191 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8.6e-07
       TPR_9  7 reedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64
                +e   +r+ +++ ++ l + ++++++++RG+l+  lG  + A++d+ ++la+ pd p+
  CTQ30148.1 40 QEVILARMEQILASRALSDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE 97
                555678999999999***************************************9875 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 1.6e-08
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap......d 61 
                  ++ ++++a ++ +++l l+P   + ++ RG++l+  G+ + A +dL a+ + +p       
  CTQ30148.1 107 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRAKLAQDDLLAFYQDDPndpfrsL 168
                 7999***************************************************5445550 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.2e-05     0.035       1      33 [.      62      94 ..      62      95 .. 0.96
   2 !   11.2   0.0    0.0003      0.34      10      33 ..     104     128 ..      98     129 .. 0.85
   3 !   10.1   0.1   0.00072      0.81       7      28 ..     240     261 ..     234     264 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.2e-05
                CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  1 aeayynlgsiylklgdyeeAkeyyekaleldpd 33
                a+++y  g +y++lg    A   + +al ++pd
  CTQ30148.1 62 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD 94
                6899***************************97 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.0003
                 HH.HHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  10 iy.lklgdyeeAkeyyekaleldpd 33 
                 iy  + g++++A e++  +leldp+
  CTQ30148.1 104 IYlTQAGNFDAAYEAFDSVLELDPT 128
                 444899******************7 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00072
                 HHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekal 28 
                 lg+ yl+lgd+++A + ++ a+
  CTQ30148.1 240 LGKYYLSLGDKDSATALFKLAV 261
                 89****************9997 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0049       5.5       2      41 ..      63     102 ..      61     103 .. 0.90
   2 !   18.4   0.0   2.5e-06    0.0028       3      39 ..      98     134 ..      96     139 .. 0.85
   3 ?    1.0   0.2      0.92     1e+03       4      42 ..     133     173 ..     132     175 .. 0.79
   4 ?    2.0   0.3      0.44     5e+02      11      38 ..     171     200 ..     166     209 .. 0.72
   5 !    8.4   0.0    0.0038       4.3       6      34 ..     239     267 ..     234     280 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0049
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 ++l++++ ++  lG  + A++ + +ala  Pd +e+  +l
  CTQ30148.1  63 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL 102
                 6799999**************************9986655 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 2.5e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawl 39 
                 +   l+ +l ++G++d+A ++++ +l+l+P+   a+l
  CTQ30148.1  98 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 134
                 566799************************9766665 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.92
      TPR_14   4 llalaeallalGdpdeAiallrralalaPdda..eawllla 42 
                 +l ++ al+  G+ + A + l +  +++P+d+   +wl+ a
  CTQ30148.1 133 HLNRGIALYYGGRAKLAQDDLLAFYQDDPNDPfrSLWLYIA 173
                 56678899999999999999999999999996446887766 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.44
      TPR_14  11 llalGdpde..AiallrralalaPddaeaw 38 
                 + a +++de  A+++lr++l +  ++++ w
  CTQ30148.1 171 YIAERKLDEkrALEALRERLNKSDKEQWGW 200
                 55566555555*******998876666555 PP

  == domain 5  score: 8.4 bits;  conditional E-value: 0.0038
      TPR_14   6 alaeallalGdpdeAiallrralalaPdd 34 
                  l++++l lGd d A al++ a+a +  +
  CTQ30148.1 239 YLGKYYLSLGDKDSATALFKLAVANNVHN 267
                 799*******************9987654 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       2.9   3.2e+03      11      31 ..      44      66 ..      41      83 .. 0.57
   2 !   24.5   0.1   2.5e-08   2.8e-05      10      62 ..      81     133 ..      74     148 .. 0.91
   3 ?   -1.6   0.0       3.5   3.9e+03      18      26 ..     157     165 ..     139     194 .. 0.65
   4 ?    2.3   0.0      0.21   2.4e+02      28      52 ..     237     261 ..     228     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.9
      TPR_19 11 lalleqalqe..dpknaearllL 31
                la++eq+l+     ++++a+ll+
  CTQ30148.1 44 LARMEQILASraLSDDERAQLLY 66
                56666654322255555555544 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 2.5e-08
      TPR_19  10 AlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddarya 62 
                 A + ++qal+  p+++e+  +L + l ++g++d+A ++ d ++e dp   +++
  CTQ30148.1  81 ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 133
                 77889******************************************944444 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.5
      TPR_19  18 lqedpknae 26 
                 +q+dp+++ 
  CTQ30148.1 157 YQDDPNDPF 165
                 566776553 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.21
      TPR_19  28 rllLAeallalgqldeAealLdalp 52 
                   +L + +l+lg+ d A al + + 
  CTQ30148.1 237 NFYLGKYYLSLGDKDSATALFKLAV 261
                 5668889**********99987665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   1.4   0.00016      0.18      22      68 .]      49      96 ..      44      96 .. 0.79
   2 !   18.7   2.4   1.8e-06     0.002       4      68 .]     103     164 ..     102     167 .. 0.91
   3 ?    3.9   0.2     0.076        85      38      63 ..     238     263 ..     229     290 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00016
      TPR_16 22 aalkrdpssPd.aaeAllllgdaalrqgrlaeAaalyraalraapdap 68
                + l++++ s d +a+ l+++g+++  +g  a+A+  +  al+  pd p
  CTQ30148.1 49 QILASRALSDDeRAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP 96
                444444444444**********************88888889999976 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.8e-06
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 + ++ +ag++d+A +a++ +l++d   P    A+l++g a++  gr ++A + ++a ++ +p++p
  CTQ30148.1 103 GIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRAKLAQDDLLAFYQDDPNDP 164
                 667779******************...***********************988888888888876 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.076
      TPR_16  38 lllgdaalrqgrlaeAaalyraalra 63 
                 ++lg  +l +g+ + A al++ a+++
  CTQ30148.1 238 FYLGKYYLSLGDKDSATALFKLAVAN 263
                 56666666666666666666666543 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.81   9.1e+02      13      27 ..      62      76 ..      57      83 .. 0.80
   2 !    9.4   0.0    0.0013       1.5       4      32 ..      87     115 ..      84     117 .. 0.91
   3 !    6.7   0.1    0.0093        10       4      33 ..     121     150 ..     118     151 .. 0.86
   4 ?    6.5   0.1     0.011        12      13      32 ..     234     253 ..     227     257 .. 0.85
   5 ?    1.0   0.0      0.63   7.1e+02       9      22 ..     249     262 ..     249     290 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.81
      TPR_17 13 adaynnLAelllknG 27
                a +++++++l+ ++G
  CTQ30148.1 62 AQLLYERGVLYDSLG 76
                667899999998776 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0013
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtA 32 
                 +al++ P+ ++++n+L+ +l ++G+++ A
  CTQ30148.1  87 QALAIRPDMPEVFNYLGIYLTQAGNFDAA 115
                 89999********************9988 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0093
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtAr 33 
                  +leldP++ +a+ n++ +l+  G+ + A+
  CTQ30148.1 121 SVLELDPTYNYAHLNRGIALYYGGRAKLAQ 150
                 579*****************9888887776 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.011
      TPR_17  13 adaynnLAelllknGdlmtA 32 
                 ++  ++L++++l++Gd++ A
  CTQ30148.1 234 SETNFYLGKYYLSLGDKDSA 253
                 57789**********97755 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.63
      TPR_17   9 dPnnadaynnLAel 22 
                 d+++a a++ LA++
  CTQ30148.1 249 DKDSATALFKLAVA 262
                 67889999999975 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.9   0.00075      0.84      34      76 ..      53      93 ..      43      94 .. 0.83
   2 !   11.8   0.6    0.0002      0.22       5      58 ..      98     150 ..      94     154 .. 0.75
   3 ?    5.9   0.1     0.014        15      41      73 ..     232     262 ..     224     264 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00075
      TPR_12 34 rrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76
                +r+l +d  + a+ l+  g ly+ lg  + A++ + +alai++
  CTQ30148.1 53 SRALSDD--ERAQLLYERGVLYDSLGLRALARNDFSQALAIRP 93
                4454444..59*****************************986 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0002
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyral 58 
                 + n l+  l+++g++d A e ++ +le+   +++  h++  ++l+  gr+ +a+
  CTQ30148.1  98 VFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRAKLAQ 150
                 67679************************.666666666666666555554444 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.014
      TPR_12  41 hpltattlrnLgrlyralgryeeAlelleeala 73 
                 h  +++t + Lg +y+ lg+ + A +l++ a+a
  CTQ30148.1 232 H--LSETNFYLGKYYLSLGDKDSATALFKLAVA 262
                 5..6677888******************98876 PP

>> TAtT  TRAP transporter T-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0073       8.2      62      90 ..      54      82 ..      41     102 .. 0.73
   2 !    8.0   0.1    0.0013       1.5     150     178 ..     119     147 ..     109     149 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0073
                HHHHHHHHHHHHHHHHHHHHHHHHHHHST CS
        TAtT 62 akeaareRAkkLylrareyalraLetayd 90
                ++ ++ eRA+ Ly+r+  y   +L + + 
  CTQ30148.1 54 RALSDDERAQLLYERGVLYDSLGLRALAR 82
                566789**********9997777765433 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0013
                 HHHHHHH-TTHHHHHHHHHHHHHHHHS-G CS
        TAtT 150 mervlelDesyseGalheflgvfyaarpe 178
                    vlelD++y+++ l+  ++++y+ r++
  CTQ30148.1 119 FDSVLELDPTYNYAHLNRGIALYYGGRAK 147
                 5679*********************9975 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.6     0.034        38      12      32 ..      56      74 ..      44      97 .. 0.62
   2 ?    6.3   0.1      0.01        11       2      29 ..      99     126 ..      98     137 .. 0.87
   3 ?   -2.7   0.0       7.2     8e+03      25      32 ..     182     190 ..     180     195 .. 0.43
   4 ?    5.6   0.0     0.016        18       4      30 ..     239     263 ..     238     268 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.034
       TPR_7 12 lGdyeeAielyeqsLaltkdp 32
                l d e+A  lye+  ++ +d 
  CTQ30148.1 56 LSDDERAQLLYER--GVLYDS 74
                7777777777777..444443 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.01
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLalt 29 
                 +++L+    + G+++ A e +  +L+l+
  CTQ30148.1  99 FNYLGIYLTQAGNFDAAYEAFDSVLELD 126
                 5899999***************966665 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 7.2
       TPR_7  25 sL.altkdp 32 
                 +L al+++ 
  CTQ30148.1 182 ALeALRERL 190
                 443444333 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.016
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltk 30 
                 +L+  y +lGd + A  l++   a+++
  CTQ30148.1 239 YLGKYYLSLGDKDSATALFKL--AVAN 263
                 79*****************99..7765 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.5     0.055        62       9      32 ..      69      92 ..      61      92 .. 0.74
   2 ?    7.5   0.0    0.0033       3.7       6      21 ..     100     115 ..      98     125 .. 0.82
   3 ?   -2.0   0.1       3.2   3.6e+03      26      36 ..     180     190 ..     173     194 .. 0.65
   4 ?    4.6   0.0     0.028        32       8      30 ..     240     262 ..     239     262 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.055
      TPR_10  9 analrqrgrydeAealleealair 32
                ++++ ++g ++ A++++ +alair
  CTQ30148.1 69 GVLYDSLGLRALARNDFSQALAIR 92
                677778888888888888888876 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0033
      TPR_10   6 nNLanalrqrgrydeA 21 
                 n L+++l+q g++d+A
  CTQ30148.1 100 NYLGIYLTQAGNFDAA 115
                 89************99 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.2
      TPR_10  26 eealairrrll 36 
                 ++al++ r+ l
  CTQ30148.1 180 KRALEALRERL 190
                 67777755555 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.028
      TPR_10   8 LanalrqrgrydeAealleeala 30 
                 L+ ++ ++g+ d A al++ a+a
  CTQ30148.1 240 LGKYYLSLGDKDSATALFKLAVA 262
                 899***************98886 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.034        38       3      32 ..      65      94 ..      63      94 .. 0.90
   2 ?    6.3   0.0     0.015        17      12      31 ..     108     127 ..     101     129 .. 0.82
   3 ?    3.8   0.4     0.095   1.1e+02       1      32 [.     131     162 ..     131     163 .. 0.84
   4 ?    0.3   0.1       1.2   1.4e+03      11      24 ..     175     187 ..     169     189 .. 0.74
   5 ?    3.8   0.0     0.099   1.1e+02       4      26 ..     238     260 ..     236     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.034
                HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6  3 lyklalsyrklgdtdkAlealerlikeYPd 32
                ly ++ +y +lg  + A+  + + +   Pd
  CTQ30148.1 65 LYERGVLYDSLGLRALARNDFSQALAIRPD 94
                9*********99999999999999998887 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHHHHHH-T CS
       TPR_6  12 klgdtdkAlealerlikeYP 31 
                 ++g+ d+A ea++++++  P
  CTQ30148.1 108 QAGNFDAAYEAFDSVLELDP 127
                 579*************9988 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.095
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlikeYPd 32 
                 +A ++++ +++ +g++  A + l  + ++ P+
  CTQ30148.1 131 YAHLNRGIALYYGGRAKLAQDDLLAFYQDDPN 162
                 79999999999999999999988777777776 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHH CS
       TPR_6  11 rklgdtdkAleale 24 
                 rkl d  +Aleal+
  CTQ30148.1 175 RKL-DEKRALEALR 187
                 456.8889999997 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.099
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerl 26 
                 ++l++ y++lgd+d A ++++  
  CTQ30148.1 238 FYLGKYYLSLGDKDSATALFKLA 260
                 78999999999999998888755 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.47   5.3e+02      42      59 ..     102     119 ..      52     134 .. 0.69
   2 ?   11.2   0.2    0.0002      0.22      17      64 ..     217     262 ..     209     290 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.47
                 HHHHHHHCT-HHHHHHHH CS
        RPN7  42 laehYlkigdleeAlkay 59 
                 l+ + +++g+++ A +a+
  CTQ30148.1 102 LGIYLTQAGNFDAAYEAF 119
                 333444444444444444 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCC CS
        RPN7  17 eeLdaelkdakenlgkeeirrakldlaehYlkigdleeAlkaysrire 64 
                  +L+a+ +d  +++  e   +++  l+++Yl+ gd+++A ++++ ++ 
  CTQ30148.1 217 TRLKADATD--NTSLAEHLSETNFYLGKYYLSLGDKDSATALFKLAVA 262
                 456666666..99999*************************9987665 PP

>> IF-2  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     9e-05       0.1      22      62 ..     178     218 ..     175     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9e-05
                 SSHHHHHHHHHHHHCTT.SSTEEEECEEEESSB-HHHHHHH CS
        IF-2  22 DvqGsleAlkeaLekleseevkvkvihsgvGaitesDvela 62 
                 D +  leAl+e L+k ++e+   ++++   G+i+e++ +  
  CTQ30148.1 178 DEKRALEALRERLNKSDKEQWGWNIVEFYLGDISEKELMTR 218
                 666789*********988******************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2098.76
//
Query:       CTQ30149.1  [L=711]
Description: polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-42  145.5   0.0    2.3e-21   76.7   0.0    2.6  2  RNase_PH    3' exoribonuclease family, domain 1
    7.2e-26   90.5   1.7    7.2e-26   90.5   1.7    2.0  2  PNPase      Polyribonucleotide nucleotidyltransferase, RNA bi
      3e-22   78.8   3.4      3e-22   78.8   3.4    2.6  2  S1          S1 RNA binding domain
    4.9e-21   74.5   2.1    4.2e-14   52.3   0.1    2.8  2  RNase_PH_C  3' exoribonuclease family, domain 2
    3.5e-09   36.4   2.8    3.5e-09   36.4   2.8    2.2  2  KH_1        KH domain
     0.0011   18.8   3.2     0.0019   18.0   0.2    2.7  2  KH_2        KH domain
     0.0012   18.8   0.0     0.0074   16.3   0.0    2.4  2  S1_2        S1 domain
  ------ inclusion threshold ------
       0.12   12.7   0.6       0.59   10.5   0.1    2.3  2  DUF4172     Domain of unknown function (DUF4172)


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   1.7e-21   3.8e-18       5     132 .]      16     144 ..      13     144 .. 0.89
   2 !   76.7   0.0     1e-24   2.3e-21       2     132 .]     324     456 ..     323     456 .. 0.91

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 1.7e-21
                 EEEEES.SSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG.--CCEEEECCCCECCCCEC-C........S...HHHHHHHHHHHHHHCCTC-CCGCC CS
    RNase_PH   5 lsietg.vlsqanGSaylelGdtkvlasvtgpieerpseer.ddaegaldveveyapfasger.....rregrpsdeeielsrlleralrpsillekkp 96 
                 +++etg +++qa + ++++++dt v ++v g++++   ++  d+++  l+v+++   +a+g++     rregrps+ e++++rl++r +rp+++     
  CTQ30149.1  16 VTLETGmMARQATAAVMVSMDDTAVFVTVVGQKKA---KPGqDFFP--LTVNYQERTYAAGKIpggffRREGRPSEGETLIARLIDRPVRPLFPEGFV- 108
                 799***999************************98...44448999..**********************************************9887. PP

                 TCEEEEEEEEEECCC.S-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  97 kstididitvlssdg.gslldalinaaslALadagip 132
                  +++++ +tv+s +   ++  +++++as+AL  +gip
  CTQ30149.1 109 -NEVQVIATVVSVNPqVNPDIVAMIGASAALSLSGIP 144
                 .5566655555554444*******************9 PP

  == domain 2  score: 76.7 bits;  conditional E-value: 1e-24
                 EEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG--CC....EEEECCCCECCCCEC-C...S...HHHHHHHHHHHHHHCCTC-C.CGC CS
    RNase_PH   2 lRslsietgvlsqanGSaylelGdtkvlasvtgpieerpseerddae....galdveveyapfasgerrregrpsdeeielsrlleralrpsill.ekk 95 
                 +R l++ tgvl++ +GSa+++ G+t+ l++ t+++  +++++ d+      + +  +++++p++ ge+ + g p+++ei   rl +r ++++ ++ e++
  CTQ30149.1 324 IRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNI-DELMgertDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPTiEEF 421
                 68899******************************8865555.43335666779**************999***********************85666 PP

                 CTCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  96 pkstididitvlssdggslldalinaaslALadagip 132
                 p +t++++ ++++s+g s  +a++++aslAL+dag+p
  CTQ30149.1 422 P-YTVRVVSEITESNG-SSSMASVCGASLALMDAGVP 456
                 6.**************.******************99 PP

>> PNPase  Polyribonucleotide nucleotidyltransferase, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   1.7   3.2e-29   7.2e-26       1      83 []     241     320 ..     241     320 .. 0.97
   2 ?   -3.7   0.2       7.8   1.7e+04      33      64 ..     589     620 ..     586     621 .. 0.67

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 3.2e-29
                 HHHHHHHTTTHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHH...HHSTTS-HHHHHHHHHHHHHHHHHHHHHHTS-TTTS-- CS
      PNPase   1 eleekvaelaeerisealtiteKqeRyaaldeikekvveafaaeleeedeedekeikeifkalekkvvRsrildegvRiDGRe 83 
                 +l+++va+lae r+s+a++it+KqeRya++d ik++++++++   +e++++d++e++ei++a+ek+vvRsr+l++++RiDGRe
  CTQ30149.1 241 ALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIATLV---AEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGRE 320
                 5899**************************************...8899*********************************6 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7.8
                 HHHHHHHHHH...HHSTTS-HHHHHHHHHHHH CS
      PNPase  33 ikekvveafaaeleeedeedekeikeifkale 64 
                 i+++ + ++aa+  ++ +   + i+ei  ++e
  CTQ30149.1 589 IEDDGTVKIAATDGDKAQHAIRRIEEITAEIE 620
                 55666666666667777777777887777765 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.39   8.7e+02      41      68 ..     578     605 ..     554     610 .. 0.79
   2 !   78.8   3.4   1.3e-25     3e-22       2      75 .]     619     690 ..     618     690 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.39
                 CEESCHHHCEETTEEEEEEEEEEETTTT CS
          S1  41 arvedpdevlkvGdevkvkvlkvdkdrr 68 
                 a +e+ ++++ ++d   vk+  +d d++
  CTQ30149.1 578 ALTEETGTTIEIEDDGTVKIAATDGDKA 605
                 5788999**************9999976 PP

  == domain 2  score: 78.8 bits;  conditional E-value: 1.3e-25
                 STTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   2 pekgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                  e+g ++ G+Vt+++++GafV +g+g eg+v++s+++++ rve+ ++ l++G+ev+vkvl+vd++ r ++lsik
  CTQ30149.1 619 IEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADK-RVEKVTDYLQMGQEVPVKVLEVDRQGR-VRLSIK 690
                 689************************************.*************************88.****97 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.1   1.9e-17   4.2e-14       1      66 [.     147     210 ..     147     211 .. 0.94
   2 !   21.0   0.4   1.1e-07   0.00024       2      65 ..     460     527 ..     459     529 .. 0.91

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 1.9e-17
                 S--EEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSC.EEHHHHHHHHHHHHH CS
  RNase_PH_C   1 apviavtvgkvddqfvlDptkeEedlsegdltlavagtkevvtlmkeggsq.ldeetlleaielAkk 66 
                 +p++a +vg+++dq+vl+pt+eE  l +++l+l+vagt+   +lm e ++  l+e+++l a+ ++++
  CTQ30149.1 147 GPIGAARVGYINDQYVLNPTQEE--LKSSKLDLVVAGTEAA-VLMVESEAElLSEDQMLGAVVFGHE 210
                 599********************..*************999.9999999999*********999987 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.1e-07
                 --EEEEEEEETTE....EEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSC..EEHHHHHHHHHHHH CS
  RNase_PH_C   2 pviavtvgkvddq....fvlDptkeEedlsegdltlavagtkevvtlmkeggsq..ldeetlleaielAk 65 
                 +v+++++g+v +     ++ D   +E++l+  d+++ vag+++ +  ++++ +   ++ e +  a+  Ak
  CTQ30149.1 460 AVAGIAMGLVKEGdnfvVLSDILGDEDHLG--DMDFKVAGSRDGISALQMDIKIegITKEIMQVALNQAK 527
                 79********7666688888******9987..********************9999******99999997 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   2.8   1.5e-12   3.5e-09       2      66 .]     556     614 ..     555     614 .. 0.91
   2 ?   -2.4   0.0         2   4.4e+03      25      63 ..     632     665 ..     628     667 .. 0.68

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.5e-12
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEE.SHHHHHHHHHHHHH CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedegsderevtisG.speavekAkeliee 66 
                  +i+++ +++  +IGkgGs+I+ + eetg+ I ++       d+ +v i   + ++ ++A+++iee
  CTQ30149.1 556 HTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE-------DDGTVKIAAtDGDKAQHAIRRIEE 614
                 5899*****************************76.......3579****999999******9986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2
                 HHHHHT-EEEEESSTT...T.-EEEEEE.SHHHHHHHHHH CS
        KH_1  25 IreetgakIkvpksedegsderevtisG.speavekAkel 63 
                 I +  ga + +  +     +e  v+is    ++vek  + 
  CTQ30149.1 632 IVD-FGAFVAIG-GG----KEGLVHISQiADKRVEKVTDY 665
                 555.77888854.32....678999998777778887765 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2   8.3e-07    0.0019      28      68 ..     557     597 ..     546     601 .. 0.87
   2 ?   -0.3   0.2      0.44   9.8e+02      39      75 ..     640     681 ..     638     693 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 8.3e-07
                 EEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEE CS
        KH_2  28 iiviresqpgivIGkgGsnikkigkelrkdieklegkkVkl 68 
                 +i i   + + vIGkgGs i+++++e +  ie+  ++ Vk+
  CTQ30149.1 557 TIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKI 597
                 68889999999********************9877777876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.44
                 HHTGGGHHHHHHHHHHHHHHHHHHTTC.....EEEEEEEETT CS
        KH_2  39 vIGkgGsnikkigkelrkdieklegkk.....VklnivkVkk 75 
                 +IG g + +  i + + k++ek+ +       V +++ +V +
  CTQ30149.1 640 AIGGGKEGLVHISQIADKRVEKVTDYLqmgqeVPVKVLEVDR 681
                 677777778888888888888776655666666666666655 PP

>> S1_2  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.3e-06    0.0074       1      36 [.     621     656 ..     621     674 .. 0.89
   2 ?   -2.0   0.0       1.8     4e+03      19      37 ..     677     695 ..     669     696 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.3e-06
        S1_2   1 iGkintlkvlretdfgyfLqkdesgevlLpkkevpe 36 
                 +G+i + kv+r+ dfg+f++ ++++e l++ +++ +
  CTQ30149.1 621 VGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIAD 656
                 699******************999*******99974 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.8
        S1_2  19 LqkdesgevlLpkkevpee 37 
                 L+ d +g v L  ke++e+
  CTQ30149.1 677 LEVDRQGRVRLSIKEATEQ 695
                 7778889999999999875 PP

>> DUF4172  Domain of unknown function (DUF4172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00026      0.59       9      71 ..     229     292 ..     224     297 .. 0.81
   2 ?   -1.4   0.0       1.3     3e+03      48      64 ..     575     591 ..     571     593 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00026
     DUF4172   9 peftwdaealaellaevrrk.qGrllGklealgfelreealletlteevvksseIEGekLdres 71 
                 p++ w+ ea++e l++   + +   l  + +++ ++++ a+++++ +e +++   E+e+Ld+++
  CTQ30149.1 229 PRWDWQPEAVNEALNARVAAlAESRLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANE 292
                 89********99997644430334455666788899999**********************986 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.3
     DUF4172  48 lletlteevvksseIEG 64 
                 ++++ltee  ++ eIE+
  CTQ30149.1 575 VIRALTEETGTTIEIED 591
                 6889************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5071.89
//
Query:       CTQ30150.1  [L=89]
Description: 30S ribosomal protein S15 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-38  128.6   1.0    8.5e-38  128.4   1.0    1.0  1  Ribosomal_S15  Ribosomal protein S15


Domain annotation for each model (and alignments):
>> Ribosomal_S15  Ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.4   1.0   4.8e-42   8.5e-38       1      81 []       8      88 ..       8      88 .. 0.99

  Alignments for each domain:
  == domain 1  score: 128.4 bits;  conditional E-value: 4.8e-42
                   HHHHHHHHSSSTT-TSSHHHHHHHHHHHHHHHHHHHHCTTT-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCTST CS
  Ribosomal_S15  1 kkelikefqrhekDtGspevqiallterInnltehlkenkkDkhsrrgLlklvskRrkllkYLkrkdverYkklieklglr 81
                   k+++++ef+r e+D Gs+evq+allt++In+l+ h+ e+kkD+hsrrgLl++vs+Rrkll+YLkrkdv+rY +lie+lglr
     CTQ30150.1  8 KAKIVSEFGRGENDSGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYSALIERLGLR 88
                   7899***************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 691.89
//
Query:       CTQ30151.1  [L=314]
Description: tRNA pseudouridine synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-56  190.8   0.0    2.1e-56  190.4   0.0    1.2  1  TruB_N    TruB family pseudouridylate synthase (N terminal do
    4.6e-22   77.9   0.1    8.1e-22   77.2   0.1    1.4  1  TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
    9.9e-20   70.3   0.1    2.6e-19   69.0   0.1    1.8  1  TruB-C_2  Pseudouridine synthase II TruB, C-terminal


Domain annotation for each model (and alignments):
>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.4   0.0   3.5e-60   2.1e-56       1     149 []      33     180 ..      33     180 .. 0.99

  Alignments for each domain:
  == domain 1  score: 190.4 bits;  conditional E-value: 3.5e-60
                 HHHTT-S-EEESS---TT-EEEEEEEEGGGGGGHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE----------- CS
      TruB_N   1 krllkakkvGhtGtLDplatGvLvvavgeaTklleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieqvppmySAvk 99 
                 kr+++a+++GhtG LDplatG+L++++geaTk+++yll++dK+Y++ ++lg++tdt Da+g+++ e +  ++++e+l ++l++f+Ge +qvp+mySA+k
  CTQ30151.1  33 KRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIAKLGQRTDTSDADGQVVGE-RPLTFSDEQLAAALDSFRGETQQVPSMYSALK 130
                 89**************************************************************98.4899**************************** PP

                 ----------------------EEEEEEEEEEEEEEEEEEEEEESTTTTH CS
      TruB_N 100 vnGkrlyelaregeeverkkrkvtiyelelleveepevelevecskGtYi 149
                 ++Gk+lye+ar+g+ev r++r++t+yel +++ e +e+ele++cskGtYi
  CTQ30151.1 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRREGDELELEIHCSKGTYI 180
                 *************************************************9 PP

>> TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.1   1.4e-25   8.1e-22       1      62 [.     181     247 ..     181     249 .. 0.88

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 1.4e-25
                 HHHHHHHHHHTTS-EEEEEEEEEEETTEGG-..B-HHHHHHHHHHHHT--H.......HHHHEEEGGGG CS
    TruB_C_2   1 RtLcdDiGeaLgcgAhveeLRRtrvgpfdeedmvtledLedavllykedee.......LdrlllPlesa 62 
                 Rt++dD+Ge+LgcgAhv+ LRR++v++++ e+mvtle+L+++v  ++   +       Ld+ll+P++s 
  CTQ30151.1 181 RTIIDDLGEKLGCGAHVIFLRRLAVSKYPVERMVTLEQLQALVDEAAA--QdipaaqlLDPLLMPMDSP 247
                 9****************************************7764443..2346677**********96 PP

>> TruB-C_2  Pseudouridine synthase II TruB, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.1   4.3e-23   2.6e-19       1      58 []     252     309 ..     252     309 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 4.3e-23
    TruB-C_2   1 PeveLseesakrflqGQrvklaaglpaeglVRvy.deegrFlGvGeitddgvlaPkRLv 58 
                 P v+++e sa +f++G++v++ +g+p +glVRv  +e+g+FlG+Gei+d+g++aP+RLv
  CTQ30151.1 252 PLVNIPETSAVYFKNGNPVRQ-SGAPLNGLVRVMeSESGKFLGMGEIDDEGRVAPRRLV 309
                 88*****************66.9***********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2348.66
//
Query:       CTQ30152.1  [L=133]
Description: 30s ribosome binding factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-33  114.9   0.0    2.5e-33  114.7   0.0    1.1  1  RBFA      Ribosome-binding factor A
  ------ inclusion threshold ------
      0.013   14.9   0.0      0.018   14.5   0.0    1.2  1  DUF3047   Protein of unknown function (DUF3047)


Domain annotation for each model (and alignments):
>> RBFA  Ribosome-binding factor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   0.0   2.7e-37   2.5e-33       1     104 [.       7     112 ..       7     113 .. 0.94

  Alignments for each domain:
  == domain 1  score: 114.7 bits;  conditional E-value: 2.7e-37
                 TCHHHHHHHHHHHHHHHHHCT-HCCTGHHCEEEEEEESTTSSEEEEEEEESS-HH..HHHHHHHHHHHTHHHHHHHHHHHC-SSSG-EEEEESSSTTTT CS
        RBFA   1 RqervaeliqrelseilqeelkdprlgklvtiteVkvsrDlskakVyvsvlgsee..ekeevlkaLkkaagflrrelakrlklrktPeLkFvlDesleq 97 
                 R +rva+++q+e++ ilq+e+kdprlg ++t+++V++srDl +akVyv++l++++  + ++ +kaL++a+gf+r+ l+k ++lr +PeL+F++D+sl +
  CTQ30152.1   7 RPQRVAQEMQKEIAIILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDeaAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVE 105
                 779***********************88************************854456666799*********************************** PP

                 --XXXXX CS
        RBFA  98 akeiekl 104
                 ++++++l
  CTQ30152.1 106 GMRMSNL 112
                 ****997 PP

>> DUF3047  Protein of unknown function (DUF3047)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     2e-06     0.018      77     128 ..      49     119 ..      40     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2e-06
     DUF3047  77 aariyvvfdddkdklslvertk.........kage............aLnYvWssslpkgtvvpnaytdrvrm 128
                  a++yv+f +dkd++ ++  +k         +  +             L++ +++sl +g  ++n  t+ v++
  CTQ30152.1  49 YAKVYVTFLNDKDEAAVKAGIKalqeasgfiR--SllgkamrlrivpELTFFYDNSLVEGMRMSNLVTSVVKH 119
                 499**************999998876655552..0444488899999******************99987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1055.44
//
Query:       CTQ30153.1  [L=896]
Description: translation initiation factor IF-2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.9e-37  126.4   1.7      8e-35  120.1   1.7    3.0  1  GTP_EFTU      Elongation factor Tu GTP binding domain
    1.2e-36  125.0   2.0    4.1e-36  123.3   2.0    2.0  1  IF-2          Translation-initiation factor 2
    1.7e-24   85.4   5.6    7.8e-15   54.4   1.2    2.8  2  IF2_N         Translation initiation factor IF-2, N-terminal 
    7.5e-16   58.1   4.6    7.5e-16   58.1   4.6    2.3  2  IF2_assoc     Bacterial translation initiation factor IF-2 as
      6e-10   39.2   0.1    2.1e-09   37.5   0.1    2.0  1  MMR_HSR1      50S ribosome-binding GTPase
    8.3e-10   38.9   6.6    8.6e-07   29.3   0.4    4.0  3  GTP_EFTU_D2   Elongation factor Tu domain 2
    8.1e-06   25.5   0.2    6.2e-05   22.7   0.0    2.6  2  Ras           Ras family
    3.6e-05   23.3   0.0    0.00014   21.4   0.0    2.0  2  Arf           ADP-ribosylation factor family
    0.00017   21.2   0.0    0.00045   19.8   0.0    1.8  1  FeoB_N        Ferrous iron transport protein B
     0.0021   17.8   0.1     0.0074   16.0   0.0    2.0  2  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
     0.0034   17.4   0.1      0.025   14.6   0.0    2.5  2  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
     0.0037   17.5   0.0     0.0097   16.1   0.0    1.8  1  Roc           Ras of Complex, Roc, domain of DAPkinase
     0.0055   16.2   0.0     0.0055   16.2   0.0    2.5  2  SRPRB         Signal recognition particle receptor beta subun
  ------ inclusion threshold ------
       0.15   12.0   2.9       0.35   10.8   0.2    2.8  2  GTP_EFTU_D4   Elongation factor Tu domain 4


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   1.7   6.3e-38     8e-35       6     190 ..     400     556 ..     396     559 .. 0.89

  Alignments for each domain:
  == domain 1  score: 120.1 bits;  conditional E-value: 6.3e-38
                 EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETT CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdav 104
                 ++i+ghvDhGKt+L+d +  ++                   +  ++ giT ++ a ++e  t++  i+++DtPGH+ F++   rg++++D++vlvv+a+
  CTQ30153.1 400 VTIMGHVDHGKTSLLDYIRSTK------------------VASGEAGGITQHIGAYHVE--TDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAAD 478
                 89***************99332..................2334678************..************************************** PP

                 TBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHH CS
    GTP_EFTU 105 eGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealve 190
                 +Gv+pqt e +++a++ +vp++v++NK+D+++a+ +++++e++q        +   +  g  e ++v++Sa+ g g+++ll+a+  
  CTQ30153.1 479 DGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYG------ILPEEWGG--ESQFVHVSAKAGTGIDDLLDAILL 556
                 *******************************************555......43333344..589******************975 PP

>> IF-2  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   2.0   3.2e-39   4.1e-36       1     105 []     680     785 ..     680     785 .. 0.97

  Alignments for each domain:
  == domain 1  score: 123.3 bits;  conditional E-value: 3.2e-39
                 CCCHHHCCCSCS.SCCEEEEEESSHHHHHHHHHHHHCTT.SSTEEEECEEEESSB-HHHHHHHHHSTEEEEEESSSCTHHHHHCCCCCTSEEEEESSHH CS
        IF-2   1 leelfeeikeeg.kelnviikaDvqGsleAlkeaLekleseevkvkvihsgvGaitesDvelasasnaiiigFnvkvskkakklaekegvkirlynvIY 98 
                 le++f+++ e + +e+n+++kaDvqGs+eA++++L kl+++evkvk+i sgvG ite+D +la+asnai++gFnv+++++a+k++e e+ ++r+y+vIY
  CTQ30153.1 680 LENMFANMTEGEvHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIEAESLDLRYYSVIY 778
                 58999***97779*************************77*********************************************************** PP

                 HHHHHHH CS
        IF-2  99 kliddvk 105
                 +lid+vk
  CTQ30153.1 779 NLIDEVK 785
                 *****97 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.2   4.9e-11   6.2e-08       1      53 [.       1      51 [.       1      52 [. 0.95
   2 !   54.4   1.2   6.1e-18   7.8e-15       2      54 .]     320     370 ..     319     370 .. 0.98

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 4.9e-11
       IF2_N  1 mskirVyeLAkeLgvkskevikkLfkelGievkshsssLDeetaeliaeefgi 53
                m  ++++ LA e+++++ ++i+++ +++Gi  ks+++s++ ++++ ++ ++++
  CTQ30153.1  1 MTDVTIKALASEIQTSVDRLIQQF-ADAGIR-KSADDSVTSQEKQTLLTHLNR 51
                7899********************.88****.****************99986 PP

  == domain 2  score: 54.4 bits;  conditional E-value: 6.1e-18
       IF2_N   2 skirVyeLAkeLgvkskevikkLfkelGievkshsssLDeetaeliaeefgik 54 
                 ++i+V eLA+++ vk  +vik ++k lG + +++++ +D+eta+l+aee+g+k
  CTQ30153.1 320 ETITVGELANKMAVKGSQVIKAMMK-LGAM-ATINQVIDQETAQLVAEEMGHK 370
                 79*********************99.****.********************97 PP

>> IF2_assoc  Bacterial translation initiation factor IF-2 associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   4.6   5.9e-19   7.5e-16       1      39 []      57      95 ..      57      95 .. 0.98
   2 ?   -2.4   0.1       4.6   5.9e+03       6      15 ..     185     194 ..     184     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 5.9e-19
   IF2_assoc  1 pkklTLkRksvselrqsfshGrsKtVsVEVRKKRtyvkr 39
                p klTL+Rk++s+l++++++G+sK+V++EVRKKRt+vkr
  CTQ30153.1 57 PDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKR 95
                78************************************8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.6
   IF2_assoc   6 LkRksvselr 15 
                 LkRks  e r
  CTQ30153.1 185 LKRKSEEEAR 194
                 9999988876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.1   1.6e-12   2.1e-09       2     114 .]     400     505 ..     399     505 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.6e-12
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeeleel 100
                 v i+G+   GK++L+  +  +k+  ++  g T++i  ++v++++  i+++DtpG            +a    + +d+++lvv a  +++ p+  e  + 
  CTQ30153.1 400 VTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPG-HA----AFTSMRARG-AQATDIVVLVVAAD-DGVMPQTIEAIQH 491
                 789**************************************9999*********.22....222222222.23479******877.7799998888888 PP

                 HHHTTSEEEEEEES CS
    MMR_HSR1 101 leeakkplilvlnk 114
                  + a+ p+++++nk
  CTQ30153.1 492 AKAAQVPVVVAVNK 505
                 8889*******998 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0031       3.9       1      21 [.     585     605 ..     585     622 .. 0.86
   2 ?    2.6   0.1      0.14   1.8e+02      10      65 ..     638     708 ..     637     713 .. 0.57
   3 !   29.3   0.4   6.7e-10   8.6e-07       1      73 [.     816     883 ..     816     884 .. 0.96

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0031
                  EEEEEEEEEESEEETTEEEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevri 21 
                  G va++ v +Gtl+kGd v  
   CTQ30153.1 585 GPVATVLVREGTLHKGDIVLC 605
                  679**************9986 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.14
                  ESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEE.....................ETTSEEEEEEEESSCCS CS
  GTP_EFTU_D2  10 sGtlkkGdevrilgndtskkeivtrissletfhededea.....................vaganaGvivaikgled 65 
                  sG+   Gdev +  ++++kk    r  +l++  ++ +e+                     v+++n+ +++ + g  +
   CTQ30153.1 638 SGVPAAGDEVTV--VRDEKK---AREVALYRQ-GKFREVklarqqksklenmfanmtegeVHEVNIVLKADVQGSVE 708
                  6666789*****..666566...555555554.33333334444444444444444444777777777776666655 PP

  == domain 3  score: 29.3 bits;  conditional E-value: 6.7e-10
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  G +a++ v +Gt+k+   +r+l+ n +  +   ++  sl +f+ d+ e+++g  +G++v+   ++d ++vGd +
   CTQ30153.1 816 GAIAGCMVTEGTIKRHNPIRVLRdNVVIYE---GELESLRRFKDDVNEVRNGMECGIGVKN--YND-VRVGDMI 883
                  789************************999...*************************997..***.9***976 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.2   1.5e+03     122     143 ..     204     224 ..     185     236 .. 0.81
   2 !   22.7   0.0   4.8e-08   6.2e-05       3     158 ..     401     556 ..     399     560 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.2
                 S-HHHHHHHHHHHTSEEEEEBT CS
         Ras 122 vsteegeelakelglkfletSA 143
                 v +ee++++a+e++ ++ etS 
  CTQ30153.1 204 V-AEEARRMAEENEKNWSETSD 224
                 3.578999***********995 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 4.8e-08
                 EEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHS CS
         Ras   3 vlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrva 101
                  ++G    GKtsll  +++++   + e+  g+ +++   +v+  +  ++ +DT G   f+s+r    + ++ ++lv + ++      + + +e i++ +
  CTQ30153.1 401 TIMGHVDHGKTSLL-DYIRSTKVASGEAG-GITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV----MPQTIEAIQHAK 493
                 5899999*****97.67777766665554.5799999999999999999**********************999998777654....557888999999 PP

                 TTTSEEEEEEETTTGGG..G-SS-HHHHHH..HHHHHT..SEEEEEBTTTTCTHHHHHHHHHH CS
         Ras 102 eenvpivLvGnKvDlee..kravsteegee..lakelg..lkfletSAktnenveeafeellr 158
                   +vp+v+  nK+D  e     v++e ++   l +e+g   +f+ +SAk  ++++++++++l 
  CTQ30153.1 494 AAQVPVVVAVNKIDKPEadPDRVKNELSQYgiLPEEWGgeSQFVHVSAKAGTGIDDLLDAILL 556
                 999***********988665567766655322568887789**************99998875 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.1e-07   0.00014      19     171 ..     402     554 ..     393     558 .. 0.82
   2 ?   -2.8   0.1       2.9   3.8e+03     101     137 ..     677     716 ..     672     730 .. 0.60

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.1e-07
                 EEESTTSSHHHHHHHHHHSSCEE...CSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCT CS
         Arf  19 llGLDnaGKtTilkklkleelvt...tvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalleeeelk 114
                 ++G    GKt +l  +++ ++++      T++    ++e+ n  +t+ D  G+    ++  +  ++td v+ vv + d   + ++ e     +++ + +
  CTQ30153.1 402 IMGHVDHGKTSLLDYIRSTKVASgeaGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADD-GVMPQTIE----AIQHAKAA 495
                 6777778*******99999998844345699*************************************9999996655.55555543....4688999* PP

                 TSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS...SSSSEEEEEEBTTTTBTHHHHHHHH CS
         Arf 115 evallvlaNKqDlpealseeelrellgleelk...gkrkleiqkcsavkgeglkeglewl 171
                 +v+++v  NK+D pea + + ++++l+ + +       + + +++sa  g+g+++ l+ +
  CTQ30153.1 496 QVPVVVAVNKIDKPEA-DPDRVKNELSQYGILpeeWGGESQFVHVSAKAGTGIDDLLDAI 554
                 **************98.6778999999998873332345688899999999999998866 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.9
                 HHHHHHH...CTSGCCTTSEEEEEEE-TTSTTSS-HHHHH CS
         Arf 101 keeLkal...leeeelkevallvlaNKqDlpealseeelr 137
                 k++L+++   ++e e++ev +++ a  q   ea+s++ l+
  CTQ30153.1 677 KSKLENMfanMTEGEVHEVNIVLKADVQGSVEAISDSLLK 716
                 5555555111455667777777777777777777766554 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.6e-07   0.00045       3     156 .]     400     554 ..     398     554 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.6e-07
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnlernLyLtlql 101
                 v+++G  + Gkt+l++ +  +k   g   G+t      ++++++  ++++D PG  +++++      a+d+++      +v  +d   + +++  +   
  CTQ30153.1 400 VTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVV------LVVAADDGVMPQTIEAIQHA 492
                 7899*************************************999***********999988877776666653......55666778899999999999 PP

                 HHTTSSEEEEEETHHHHHHTTEEE-HHH.....HHHHHT..S-EEEEBTTTTBTHHHHHHHH CS
      FeoB_N 102 lelgvpvvlalnmideaekkgieidlkk.....LsekLg..vpvvktsakkkegieellkai 156
                    +vpvv+a+n+id+ e++  ++ ++      L e+ g   + v++sak ++gi++ll+ai
  CTQ30153.1 493 KAAQVPVVVAVNKIDKPEADPDRVKNELsqygiLPEEWGgeSQFVHVSAKAGTGIDDLLDAI 554
                 9**************98887777765431122255566534678999999999999998875 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.8e-06    0.0074       4     139 ..     400     552 ..     398     555 .. 0.69
   2 ?   -3.4   0.0       5.9   7.6e+03      74     109 ..     674     711 ..     670     721 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.8e-06
   PduV-EutP   4 illiGkvgsGKttLtqalkgeelkYkk....tqai.....efsdev...iDtPGeylenrklysalivtsaeadvialvqdate...eesvfppgfasv 87 
                 + ++G+v+ GKt+L   ++  ++        tq i     e  + +   +DtPG       + s  +  +  +d+++lv++a++   ++++ + + a+ 
  CTQ30153.1 400 VTIMGHVDHGKTSLLDYIRSTKVASGEaggiTQHIgayhvETDNGMitfLDTPGH----AAFTSMRARGAQATDIVVLVVAADDgvmPQTIEAIQHAKA 494
                 678****************977765433333776511111444544233799995....4555555666777899999998876222455566788899 PP

   PduV-EutP  88 fnkeviGiitkidlaedeenieaveelLksaGa........ekifevsavekegieellk 139
                  + +v+  + kid++  e++ + v+++L++ G+        ++  +vsa   +gi++ll+
  CTQ30153.1 495 AQVPVVVAVNKIDKP--EADPDRVKNELSQYGIlpeewggeSQFVHVSAKAGTGIDDLLD 552
                 999***********9..7777888888888776333333336777888888888888876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.9
   PduV-EutP  74 teeesvfppgfasvfnkev..iGiitkidlaedeenie 109
                  +++s + + fa++ + ev  + i+ k+d++ + e+i+
  CTQ30153.1 674 RQQKSKLENMFANMTEGEVheVNIVLKADVQGSVEAIS 711
                 56666777777777777765577888888876666655 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.1   2.7e+03      30      49 ..     312     331 ..     307     372 .. 0.66
   2 !   14.6   0.0     2e-05     0.025      42     100 ..     482     554 ..     468     559 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.1
  MMR_HSR1_Xtn  30 hnaevliredvtvDdlidvi 49 
                   +n +v+i e +tv +l + +
    CTQ30153.1 312 VNRDVVIGETITVGELANKM 331
                   67778888888887777655 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2e-05
  MMR_HSR1_Xtn  42 vDdlidvieg.nrvYipclyvlNKiDl..isleeldelare..............pnsvviSaekelnldeLkeki 100
                   + + i++i++ +   +p+++++NKiD+  ++ + +++   e              ++ v +Sa+ ++++d+L+++i
    CTQ30153.1 482 MPQTIEAIQHaKAAQVPVVVAVNKIDKpeADPDRVKN---ElsqygilpeewggeSQFVHVSAKAGTGIDDLLDAI 554
                   567899997746799***********95544444433...22335788888998779999*************998 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   7.6e-06    0.0097       2     120 .]     400     508 ..     399     508 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.6e-06
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWlk 100
                 v ++G    GKtsll+ + + k+ + e   i   +   +v      e+d    +  + + Dt G+  f s++    ++ ++++lv+ + ++  + + ++
  CTQ30153.1 400 VTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHV------ETD----NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAA-DDGVMPQTIE 487
                 578999***********99999988876655555544433......223....235889**************999999999999976.4455667788 PP

                 HHHHH.CSSS-EEEEEE-TTT CS
         Roc 101 elkkv.agkspvilvgnkiDl 120
                  +++  a + pv++ +nkiD+
  CTQ30153.1 488 AIQHAkAAQVPVVVAVNKIDK 508
                 887652667899999****95 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.2       1.9   2.5e+03     128     172 ..     188     232 ..     180     239 .. 0.76
   2 !   16.2   0.0   4.3e-06    0.0055       3      91 ..     397     485 ..     395     521 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.9
                 --HHHHHHHHHHHHHHHHHCHHHHHH------T....T------- CS
       SRPRB 128 kspklikdaLEkElnkiierrskalkeldeeedksavlakkgkdF 172
                 ks++  + +LE+E  ++ e   +  +e++++ +++++  ++++d+
  CTQ30153.1 188 KSEEEARRKLEEEARRVAEEARRMAEENEKNWSETSDSPEDSSDY 232
                 678888999********9988777777777777666666666665 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 4.3e-06
                 --EEEEE-STTSSHHHHHHHHHHSS---B---S..S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHH CS
       SRPRB   3 kpavllvGlsdsGKTslftrLttdsvkktvtSq..essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpke 91 
                 +p v ++G  d GKTsl+  + + +v +  +    +   a++v ++++ ++t++D PGh  + +       + + +  lv   D  + p+ 
  CTQ30153.1 397 APVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGitQHIGAYHV-ETDNGMITFLDTPGHAAFTSMRARG-AQATDIVVLVVAADDGVMPQT 485
                 68899****************9999888887653344445555.888899*********9987654444.344445555555555555555 PP

>> GTP_EFTU_D4  Elongation factor Tu domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.94   1.2e+03      17      43 ..     314     337 ..     308     378 .. 0.66
   2 ?   10.8   0.2   0.00028      0.35      18      81 ..     816     885 ..     803     890 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.94
                  CCEEEEEEEEEEEEETT-EEEETTE.E CS
  GTP_EFTU_D4  17 dpaivGvevlgGvikpgvklikedGre 43 
                  +++++G ++  G +  ++ +  +   +
   CTQ30153.1 314 RDVVIGETITVGELANKMAVKGS---Q 337
                  68899988999988888777433...2 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00028
                  CEEEEEEEEEEEEETT-EEEETTE.EE...EEEEEEEETTEEESEEETT-EEEEEEES..S-.TTTS--T CS
  GTP_EFTU_D4  18 paivGvevlgGvikpgvklikedGrev...GeilqiqdkgkkleeakaGqevaisieg..ki.vGrqike 81 
                   ai G  v +G+ik   ++     + v   Ge+ ++++ ++ ++e+++G+e +i +++  ++ vG  i+ 
   CTQ30153.1 816 GAIAGCMVTEGTIKRHNPIRVLRDNVViyeGELESLRRFKDDVNEVRNGMECGIGVKNynDVrVGDMIEV 885
                  589***********9988755444444478*************************996225677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (896 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2668  (0.148809); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                       233  (0.0129957); expected 17.9 (0.001)
Passed Fwd filter:                        73  (0.00407162); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.56u 0.37s 00:00:01.93 Elapsed: 00:00:00.53
# Mc/sec: 5053.33
//
Query:       CTQ30154.1  [L=495]
Description: transcription termination/antitermination L factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-38  130.6   8.4    1.1e-37  129.1   8.4    1.8  1  NusA_N           NusA N-terminal domain
    6.2e-29   99.9   3.5    1.7e-27   95.3   0.2    3.0  3  KH_5             NusA-like KH domain
    5.7e-16   58.9   2.0    4.2e-10   40.1   0.3    3.2  3  HHH_5            Helix-hairpin-helix domain
      5e-05   23.6   1.3     0.0001   22.6   0.1    2.3  2  S1               S1 RNA binding domain
  ------ inclusion threshold ------
      0.012   15.9   0.2        6.2    7.1   0.3    2.7  2  DUF4332          Domain of unknown function (DUF4332)
      0.017   15.0   4.3      0.027   14.3   0.0    3.3  4  KH_2             KH domain
      0.027   14.3   0.2       0.29   11.0   0.0    2.8  2  KH_4             KH domain
       0.13   12.1   0.0        8.7    6.3   0.0    3.2  3  DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
       0.38   10.9   4.4        4.2    7.5   0.1    3.1  3  HHH_2            Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> NusA_N  NusA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   8.4   5.4e-41   1.1e-37       1     120 [.       4     123 ..       4     124 .. 0.98

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 5.4e-41
                 .CHCCCCCCCCCS---HHHHHHHHHHHHHHHHHCCT-SSS-EEEEE-TTT--EEEEEEEEEESS-S-TTTEEEHHHHHCCSTT--TTBEEEEE----SS CS
      NusA_N   1 EllealeelakekgiskevviealeeaLakaykknygedenveveidretgeikvyskktVveevedpekeIsleeakkidpkikvGdtveeevtpkdf 99 
                 E+l ++e++++ek +++e+++eale+aLa+a+kk+y+++ +v+veidr++g++++++++ Vveev++p +eI+le a+  d++++vGd+ve ++++  f
  CTQ30154.1   4 EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLVVEEVTQPTREITLEAARFEDESMNVGDYVEDQIESVTF 102
                 899*********************************99999************************************98899************99*** PP

                 CCHCHHHHHHHHHHHHHHHCC CS
      NusA_N 100 griaaqtakqvivqkireaer 120
                 +ri++qtakqvivqk+reaer
  CTQ30154.1 103 DRITTQTAKQVIVQKVREAER 123
                 ********************9 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       3.5     7e+03      26      42 ..     134     150 ..     131     152 .. 0.83
   2 !   95.3   0.2   8.5e-31   1.7e-27       1      68 [.     230     297 ..     230     298 .. 0.98
   3 ?    4.4   0.0     0.021        41       5      31 ..     305     326 ..     302     343 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.5
        KH_5  26 kGsrikavsseLkgeki 42 
                 +G++i  v+++ +  +i
  CTQ30154.1 134 EGEIITGVVKKVNRDNI 150
                 79999999999988888 PP

  == domain 2  score: 95.3 bits;  conditional E-value: 8.5e-31
        KH_5   1 aGertkvaVkshnpnvdpvGaivgkkGsrikavsseLkgekidvvewseDlaefianalsPaevlsVk 68 
                 +G+r+k+aVk +++++dpvGa+vg++G+r++avs eL ge+id+v w++++a+f+ na++Pa+v s+ 
  CTQ30154.1 230 PGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIV 297
                 79**************************************************************9985 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.021
        KH_5   5 tkvaVkshnpnvdpvGaivgkkGsrik 31 
                 + +aV+++n     +++++g++G++++
  CTQ30154.1 305 MDIAVEAGN-----LAQAIGRNGQNVR 326
                 5699*****.....***********98 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.7   5.3e+03      24      39 ..     339     361 ..     330     370 .. 0.65
   2 !   16.8   0.0     4e-06    0.0079      15      56 ..     370     411 ..     364     412 .. 0.92
   3 !   40.1   0.3   2.1e-13   4.2e-10       2      56 ..     432     486 ..     431     487 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.7
                 -SHHHH.......HHS-HHHHHT CS
       HHH_5  24 esvedl.......aaadveeLak 39 
                  +v+dl       a+a++++++k
  CTQ30154.1 339 MTVDDLqakhqaeAHAAIDTFTK 361
                 68899943333333356777766 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 4e-06
                 HHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHHH CS
       HHH_5  15 AlallsaGiesvedlaaadveeLakipGiGkktAeriilelk 56 
                 A  l++ G++s+e+la    +eL +i G+ + t+e + + +k
  CTQ30154.1 370 ATVLVEEGFSSLEELAYVPMKELLEIDGLDEATVEALRERAK 411
                 77799********************************99998 PP

  == domain 3  score: 40.1 bits;  conditional E-value: 2.1e-13
                 HHHHTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHHH CS
       HHH_5   2 eeLlsvsGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriilelk 56 
                 ++Ll ++G+ +++A +l+  G++++edla++ v++La+i G+  ++A  +i++++
  CTQ30154.1 432 DDLLNLEGLDRALAFKLAARGVCTLEDLAEQGVDDLADIEGMTDEKAGELIMAAR 486
                 79***************************************************98 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.2         9   1.8e+04      51      61 ..      38      48 ..      35      50 .. 0.70
   2 !   22.6   0.1     5e-08    0.0001       4      72 ..     134     195 ..     131     197 .. 0.92

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 9
                ETTEEEEEEEE CS
          S1 51 kvGdevkvkvl 61
                k ++e++v+v+
  CTQ30154.1 38 KYEQEIDVRVE 48
                56788888875 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 5e-08
                 TTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEE CS
          S1   4 kgevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriil 72 
                 +ge+++G+V++v+++++  +lgn++e+ + ++++        p e +++Gd+++ ++  v+ ++r+++l
  CTQ30154.1 134 EGEIITGVVKKVNRDNITLDLGNNAEAVILREDML-------PRENFRPGDRIRGVLYAVRPEARGAQL 195
                 7********************************99.......779999999999999999998888876 PP

>> DUF4332  Domain of unknown function (DUF4332)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0097        19      54      89 ..     358     393 ..     346     400 .. 0.87
   2 ?    7.1   0.3    0.0031       6.2      42      89 ..     421     468 ..     396     478 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0097
     DUF4332  54 dLarikgigeeyaeLLeaaGvdsvaeLaqrnpanLh 89 
                 ++ + ++i e  a +L++ G +s +eLa  + ++L 
  CTQ30154.1 358 TFTKYLDIDEDFATVLVEEGFSSLEELAYVPMKELL 393
                 5668899*********************98888876 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0031
     DUF4332  42 sernvlklanlAdLarikgigeeyaeLLeaaGvdsvaeLaqrnpanLh 89 
                 +e+++ + + + dL + +g+ ++ a  L a Gv++ ++La++ +++L 
  CTQ30154.1 421 QEESLGDNKPADDLLNLEGLDRALAFKLAARGVCTLEDLAEQGVDDLA 468
                 4555555566678999999999999999************99999986 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.7   5.5e+03       7      23 ..      36      52 ..      28      58 .. 0.63
   2 ?   -1.9   0.3       1.6   3.1e+03      10      39 ..      97     126 ..      91     127 .. 0.47
   3 ?   -0.2   0.1      0.46   9.1e+02      37      55 ..     249     267 ..     221     272 .. 0.84
   4 ?   14.3   0.0   1.4e-05     0.027      12      55 ..     290     333 ..     281     340 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.7
                HHHTECETEEEEEEECC CS
        KH_2  7 aveikkagvskveIert 23
                +++++++   +veI+r+
  CTQ30154.1 36 KKKYEQEIDVRVEIDRK 52
                44445555667777775 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
                 TECETEEEEEEECCSCEEEE.EEEESCHHHH CS
        KH_2  10 ikkagvskveIertanrvii.viresqpgiv 39 
                 i++ + +++  + ta++vi+  +re++ ++v
  CTQ30154.1  97 IESVTFDRITTQ-TAKQVIVqKVREAERAMV 126
                 444444444442.333333325666666665 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.46
                 HHHHTGGGHHHHHHHHHHH CS
        KH_2  37 givIGkgGsnikkigkelr 55 
                 g  +G +G++++++ +el+
  CTQ30154.1 249 GACVGMRGARVQAVSTELG 267
                 6679999****99999986 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 1.4e-05
                 CETEEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHH CS
        KH_2  12 kagvskveIertanrviiviresqpgivIGkgGsnikkigkelr 55 
                  a+v+++++++ ++   i + +++ + +IG++G+n++   +  +
  CTQ30154.1 290 PADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSG 333
                 46699*******************************99888766 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4   2.8e+03      14      25 ..      39      50 ..      25      57 .. 0.54
   2 ?   11.0   0.0   0.00015      0.29      20      51 ..     293     325 ..     281     326 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
        KH_4 14 dpeevevteeee 25
                +++e++v++e++
  CTQ30154.1 39 YEQEIDVRVEID 50
                334445544444 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00015
        KH_4  20 vtee.eeeeeveielnvegedlGrvIGkrGrtl 51 
                 v     +e++++++++ve  +l+  IG++G+++
  CTQ30154.1 293 VASIvVDEDKHTMDIAVEAGNLAQAIGRNGQNV 325
                 3333356789*********************86 PP

>> DNA_pol_lambd_f  Fingers domain of DNA polymerase lambda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       0.4   7.9e+02      22      31 ..     338     347 ..     334     356 .. 0.78
   2 ?    0.3   0.0      0.31   6.2e+02      14      28 ..     370     384 ..     365     392 .. 0.87
   3 ?    6.3   0.0    0.0044       8.7      12      31 ..     443     462 ..     439     471 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.4
  DNA_pol_lambd_f  22 irtledlrak 31 
                      ++t++dl+ak
       CTQ30154.1 338 VMTVDDLQAK 347
                      78******94 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.31
  DNA_pol_lambd_f  14 AkkwyakGirtledl 28 
                      A  ++++G+ +le+l
       CTQ30154.1 370 ATVLVEEGFSSLEEL 384
                      666899*******98 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0044
  DNA_pol_lambd_f  12 ktAkkwyakGirtledlrak 31 
                      + A k+ a+G+ tledl ++
       CTQ30154.1 443 ALAFKLAARGVCTLEDLAEQ 462
                      56899************984 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       2.4   4.8e+03      39      47 ..     212     220 ..     211     222 .. 0.86
   2 ?    7.5   0.1    0.0021       4.2      16      46 ..     370     401 ..     365     413 .. 0.79
   3 ?    3.8   0.1     0.032        63      17      50 ..     446     480 ..     442     487 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.4
       HHH_2  39 evddiGeei 47 
                 ev++iGee+
  CTQ30154.1 212 EVPEIGEEV 220
                 899***997 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0021
       HHH_2  16 AklLakr.FksldaLkkasleeLlevddiGee 46 
                 A  L+++ F sl++L+   ++eLle+d+  e 
  CTQ30154.1 370 ATVLVEEgFSSLEELAYVPMKELLEIDGLDEA 401
                 55555443*******************97665 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.032
       HHH_2  17 klLakr.FksldaLkkasleeLlevddiGeeiAqs 50 
                  +La r   +l+ L++  +++L+ +++  +e A +
  CTQ30154.1 446 FKLAARgVCTLEDLAEQGVDDLADIEGMTDEKAGE 480
                 5555541449*****************99988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3566.57
//
Query:       CTQ30155.1  [L=140]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-28   97.7   0.1    7.7e-28   96.7   0.1    1.5  1  DUF150    RimP N-terminal domain
      1e-22   80.0   0.1    1.5e-22   79.5   0.1    1.3  1  DUF150_C  RimP C-terminal SH3 domain


Domain annotation for each model (and alignments):
>> DUF150  RimP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.1   8.6e-32   7.7e-28       3      73 .]       3      72 ..       1      72 [. 0.95

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 8.6e-32
      DUF150  3 epvveslglelvdvelskegrgrvlriyidkdggvtlddcekvSraisalLdvedpieeeYtLEVsSPGld 73
                   ve+lg+elv++e+ + gr ++lriyid+++g+++ddc++vS+++sa++dvedpi+ +Y+LEVsSPGld
  CTQ30155.1  3 TAPVEALGFELVGIEFIR-GRTSTLRIYIDSEDGINVDDCADVSHQVSAVMDVEDPITVAYNLEVSSPGLD 72
                5679************98.88************************************************98 PP

>> DUF150_C  RimP C-terminal SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.1   1.6e-26   1.5e-22       1      70 []      75     140 .]      75     140 .] 0.99

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 1.6e-26
    DUF150_C   1 LktaedFarflGelVkvklklpvegrkkftGkivevdeetitlevdgkkrkkettipladidkArlvpef 70 
                 ++tae++ rf+Ge+V+++l+++v++r+k++G+i++vd+e+it++v+gk    +  + l++i+kA+lvp+f
  CTQ30155.1  75 MFTAEHYQRFTGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGK----DEVFALSNIQKANLVPHF 140
                 79**********************************************....****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1158.61
//
Query:       CTQ30156.1  [L=68]
Description: hypothetical protein CH1034_300264 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       146  (0.00814323); expected 358.6 (0.02)
Passed bias filter:                      141  (0.00786435); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 532.47
//
Query:       CTQ30157.1  [L=447]
Description: argininosuccinate synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-56  191.1   0.0    4.6e-56  190.8   0.0    1.0  1  Arginosuc_synth  Arginosuccinate synthase
  ------ inclusion threshold ------
      0.017   14.6   0.0      0.034   13.7   0.0    1.5  1  QueC             Queuosine biosynthesis protein QueC


Domain annotation for each model (and alignments):
>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.8   0.0   5.1e-60   4.6e-56       2     380 ..      16     408 ..      15     415 .. 0.87

  Alignments for each domain:
  == domain 1  score: 190.8 bits;  conditional E-value: 5.1e-60
  Arginosuc_synth   2 LaysGGlDtsviikllkeklgeeviavavdvGqee.edldevkekalklgavksvvvDakeefvedyifpaikanalYed....rYllgtalaR 90 
                      +a+sGGlDts ++ ++++k+ +   a+++++Gq++ +d d++ ++a+++ga  + ++D++++ v + i  ai+  a ++      Y  +t l R
       CTQ30157.1  16 IAFSGGLDTSAALLWMRKKG-AVPYAYTANLGQPDeDDYDAIPRRAKEYGAEGARLIDCRKQLVAEGI-AAIQCGAFHNTtgglTYFNTTPLGR 107
                      69****************99.6678********861679*************************9976.68998887765233369999***** PP

  Arginosuc_synth  91 PliakklvevakkegaeavahGctGkGnDqvRfevsirslaPdlkviaPvRelelt.....ReeeieyakekgipvevtkkkpysiDenllgrs 179
                       +   +lv++ k+ g ++   G+t kGnD  Rf      ++ +l++  P+ + ++      R+e  e+  ++g + +++ +k ys+D n+lg +
       CTQ30157.1 108 AVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDSDFInelggRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGAT 201
                      **********************************99999999*************999************************************ PP

  Arginosuc_synth 180 ieagiLe..dpknappediyeltkdpakapdepeeveiefekGvPvaldgeelsv.lelieklneiagkhGvGRiDivedRlvglksReiYeap 270
                       ea  Le  + +++  + i  +    ++ +  +eev++ fe+G Pval+g+++   +e++ ++n+i+g+hG+G  D +e+R++  ksR+iYeap
       CTQ30157.1 202 HEAKDLEflNSSVKIVNPIMGVKFWDENVKIPAEEVTVRFEQGHPVALNGKTFADdVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAP 295
                      *******4433444445555444444444445799****************98766************************************** PP

  Arginosuc_synth 271 aalvLikahkdlekltlerevakfkkiveekyaelvYkGlwfsPlkealdafiek.tqervtGtvrvklfkGs.vvvlgReseeslYdeelasy 362
                      +  +L  a++ l + + + +  +  +   ++ ++l+Y+G wf+    +l+  +++    ++tG+v ++l +G+   +l   s++  Y++e  ++
       CTQ30157.1 296 GMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQGRWFDSQALMLRDSLQRwVASQITGEVTLELRRGNdYSILNTVSDNLTYKAERLTM 389
                      *********9998877777777777788999******************99998736789************845799999************* PP

  Arginosuc_synth 363 deede.fdqkeaeGfikih 380
                      ++ d+ f  ++  G +++ 
       CTQ30157.1 390 EKGDSmFTAEDRIGQLTMR 408
                      *988625566666666655 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.8e-06     0.034       5      62 ..      17      74 ..      13      87 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.8e-06
                E--SSHHHHHHHHHHHHH-SEEEEEEEESS-TTSHHHHHHHHHHHHT--.-EEEEE-G CS
        QueC  5 llSGGlDSttvlalakkegkevealtfdYgqrhkkeleaakkiakelgveehkildld 62
                 +SGGlD +++l++++k+g+  +a t + gq  + + +a  + ake+g e  + +d +
  CTQ30157.1 17 AFSGGLDTSAALLWMRKKGAVPYAYTANLGQPDEDDYDAIPRRAKEYGAEGARLIDCR 74
                69****************************************9999999887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3333.09
//
Query:       CTQ30158.1  [L=209]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-27   95.8   0.8    1.9e-27   95.0   0.8    1.4  1  HTH_46        Winged helix-turn-helix DNA binding
    3.8e-06   26.9   0.0    7.8e-06   25.9   0.0    1.5  1  cNMP_binding  Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
      0.022   15.1   0.1      0.035   14.4   0.1    1.4  1  SWIRM         SWIRM domain
      0.024   15.0   0.1      0.042   14.2   0.1    1.3  1  Rrf2          Transcriptional regulator


Domain annotation for each model (and alignments):
>> HTH_46  Winged helix-turn-helix DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.8   4.3e-31   1.9e-27       1      68 []     139     207 ..     139     207 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 4.3e-31
      HTH_46   1 sYeliralLleLielpeelreninvlkyIqkrtnLSrSsimkvLseLkkggyIeier.GkLvkinkLPe 68 
                 +Y++ir++Lle++ l+ee+r+++++l+yIq+rt LSrSsi++vLs+LkkggyI++ r G+L++i +LPe
  CTQ30158.1 139 TYSVIRNHLLEMMLLSEETRQRVSILEYIQDRTLLSRSSILNVLSALKKGGYITFARgGYLQNIVSLPE 207
                 6********************************************************99*********6 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.7e-09   7.8e-06      19      89 .]      44     110 ..      38     110 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.7e-09
                   EEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH- CS
  cNMP_binding  19 slyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqqd 89 
                   +l+i ++Ge+++  + ++++  ++ ++ +  lfG  ++l+  +r+++++A   +ell+++ d   +l++q+
    CTQ30158.1  44 QLFIFKKGELSI--IRNSDRL-LMVTVYEPHLFGVAEMLQ-PSRSHSLRAEVSCELLRIDYDLASALFRQH 110
                   79**********..4555544.555666666********9.88******************9999999886 PP

>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   7.9e-06     0.035      28      89 .]     135     193 ..      95     193 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.9e-06
       SWIRM  28 ktpeeYlkiRnkiialyr..enpkeyltvteaqkalkrrrltgidvnllsrihefLerwGlINf 89 
                  ++++Y  iRn++++     e+ ++++++ e    ++ r l     ++++++ ++L++ G+I f
  CTQ30158.1 135 LQQRTYSVIRNHLLEMMLlsEETRQRVSILEY---IQDRTL--LSRSSILNVLSALKKGGYITF 193
                 7899***********99955556888888888...554444..468***************965 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   9.4e-06     0.042      14      60 ..     150     196 ..     141     198 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.4e-06
                 HHHHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
        Rrf2  14 llyLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrG 60 
                 ++ L++e +++   +e i +r+ +s+s +  +l+ L+k g+++  rG
  CTQ30158.1 150 MMLLSEETRQRVSILEYIQDRTLLSRSSILNVLSALKKGGYITFARG 196
                 77888888888677899**************************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1644.17
//
Query:       CTQ30159.1  [L=183]
Description: putative outer membrane porin protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-56  190.5   5.7    2.2e-56  190.4   5.7    1.0  1  YfaZ       YfaZ precursor
    0.00032   20.9  12.4    0.00087   19.5  12.4    1.7  1  OMP_b-brl  Outer membrane protein beta-barrel domain


Domain annotation for each model (and alignments):
>> YfaZ  YfaZ precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.4   5.7   2.4e-60   2.2e-56       5     180 .]       8     183 .]       1     183 [] 0.97

  Alignments for each domain:
  == domain 1  score: 190.4 bits;  conditional E-value: 2.4e-60
        YfaZ   5 rlasvaslllvaasvnavsfnaelgkeytnlglglgtntdglavsGnyirsDddGdvagvglglnlpvGpltatvGakgvylsadegdeGsavavGggl 103
                  +a  ++l + +a   av++ +e+g e+tnl   +   + g+  s ++++sD+dGd +g+g+g n+++Gp+ +t G+k vyl++++gdeG+a+a Ggg 
  CTQ30159.1   8 MVAVTIALGASSAACAAVNLHGEAGAEFTNLSASFVAGEPGMTFSSQWAHSDNDGDSVGLGMGYNFNLGPFLMTLGGKAVYLNPKDGDEGYAIAAGGGA 106
                 47888899999999************************************************************************************* PP

        YfaZ 104 alaigksfslfgeayyaPeeLssGvdsyeeansgvrynilrplalevGyryinlegkdgarDnalaDGayiGaklrf 180
                 +l++g+ f  fge+yy+P+++ssGv+ y ean+gvr n+l+ l +e+Gyryi++ gkdg+rDn+laDGay G+++rf
  CTQ30159.1 107 ELPLGQYFTFFGEGYYSPDSMSSGVEDYVEANAGVRLNVLPSLNIEAGYRYIDMAGKDGNRDNTLADGAYAGVNFRF 183
                 ***************************************************************************99 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5  12.4   9.8e-08   0.00087       7     178 .]      15     183 .]       8     183 .] 0.55

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 9.8e-08
   OMP_b-brl   7 aalsaaaaaassfggfyvggglglskvkv..........dgv.gsds.gfgfgvgagyefnd.n..vgvegglsy.sgdkdysgsgktdikinllsvpv 89 
                 +++s aa aa +  +  +g+ +++ ++++          +++ +sd+ g+ +g+g gy+fn  +    ++g++ y + ++ +          + +++ +
  CTQ30159.1  15 LGASSAACAAVN-LHGEAGAEFTNLSASFvagepgmtfsSQWaHSDNdGDSVGLGMGYNFNLgPflMTLGGKAVYlNPKDGD----------EGYAIAA 102
                 233333333333.555555555555555455555544442223333226777777777777633212222222222222222..........4567888 PP

   OMP_b-brl  90 nagyafnlsdsvlpyggaGlgytkvevdvsgngasdsdtdfglglgaGveyaladnwslkaeYrytdlksdadndlkn..ntfqvgvgyrF 178
                   g  ++l++++  +   G gy++ +         +s+ +  + + aGv+ ++ + ++++a+Yry+d+   ++n +++  ++  +gv++rF
  CTQ30159.1 103 GGGAELPLGQYFTFF---GEGYYSPDS-------MSSGVEDYVEANAGVRLNVLPSLNIEAGYRYIDMAGKDGNRDNTlaDGAYAGVNFRF 183
                 888888887764443...334432333.......344557778899*******************999775555555556**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       279  (0.0155614); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1486.12
//
Query:       CTQ30160.1  [L=133]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   13.7   0.2      0.026   13.7   0.2    1.0  1  NHS       NHS-like
      0.051   13.9   0.2        0.1   12.9   0.2    1.4  1  DUF3446   Early growth response N-terminal domain


Domain annotation for each model (and alignments):
>> NHS  NHS-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   2.9e-06     0.026     202     269 ..      17      82 ..      15     123 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.9e-06
         NHS 202 essstcpSqtsetippassppltsslcdselslntaanaedd.sqafvlrgrrnssftssaqdvddkse 269
                 + sst pSqt eti  a ++p+  s ++s ++ n a       + +++l +r n+s++s+     ++ +
  CTQ30160.1  17 GCSSTSPSQTVETI-NALTVPV--SPSESGTTANHAQAVRRYfQDNTALISRLNHSLKSHYLQDVERRD 82 
                 679***********.5555565..888999999888665544156777889999999999755545444 PP

>> DUF3446  Early growth response N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   1.1e-05       0.1      23      65 ..       8      50 ..       3      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
     DUF3446 23 lvsglvgvanppsspsssssssssssssssspslscsvaaqqs 65
                +v+g++g+a  +s+++s+++++  +   + sps s ++a++ +
  CTQ30160.1  8 IVAGVLGLAGCSSTSPSQTVETINALTVPVSPSESGTTANHAQ 50
                789*****999999********************999955554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1185.65
//
Query:       CTQ30161.1  [L=109]
Description: preprotein translocase membrane subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-22   77.3  11.4    8.6e-22   77.0  11.4    1.1  1  SecG      Preprotein translocase SecG subunit


Domain annotation for each model (and alignments):
>> SecG  Preprotein translocase SecG subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0  11.4   4.8e-26   8.6e-22       2      69 ..       5      72 ..       4      73 .. 0.94

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 4.8e-26
                HHHHHHHHHHHHHHHHHHCHHCCSCCHHTT...SS-SS--SSCCCHHCCHHHHHHHHHHHHHHHHHHC CS
        SecG  2 llillvivsilLillvLlQsgkgaglsgafgggasdslfgsrgaekfLtkiTvilavlFfvlslvlal 69
                ll++++iv+i+L++lv+lQ+gkga+++++fg+gas++lfgs+g+++f+t++T ila+lFf++sl+l+ 
  CTQ30161.1  5 LLVVFLIVAIGLVGLVMLQQGKGADMGASFGAGASGTLFGSSGSGNFMTRMTGILAALFFIISLALGN 72
                89****************************6667889*****************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 858.60
//
Query:       CTQ30162.1  [L=445]
Description: phosphoglucosamine mutase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-45  152.9   0.0    1.6e-44  151.0   0.0    1.9  2  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
      7e-31  106.8   0.1    1.2e-30  106.0   0.1    1.4  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    4.1e-20   72.3   0.2    1.2e-19   70.8   0.1    1.9  2  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
    1.3e-15   57.3   1.4    2.8e-15   56.2   0.5    2.2  2  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina
  ------ inclusion threshold ------
       0.22   11.4   0.7       0.38   10.7   0.1    1.7  2  DUF384       Domain of unknown function (DUF384)


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.0   0.0   4.4e-48   1.6e-44       1     134 [.       4     136 ..       4     138 .. 0.98
   2 ?   -2.3   0.0      0.93   3.3e+03     111     132 ..     378     399 ..     373     402 .. 0.65

  Alignments for each domain:
  == domain 1  score: 151.0 bits;  conditional E-value: 4.4e-48
                 CGGBBTTCEEEECCHCTBSCCHHHHHHHHHHHHCHHCSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEEEB-HHHHHHHHHHCCECEEEEE-- CS
   PGM_PMM_I   1 rqkfgtsGlRgkvgegeltpelveklgqaiaeylkaeakkkkvvvGrDtRvssrelaealaaglaanGvevillgllptPavsfairklkadagimita 99 
                 r++fgt+G+Rg+vg  ++tpe+v+klg+a++++l+++ + +k+++G+DtR+s+ +l++al aglaa+G+++ ++g++ptPa+++++r+++a+agi+i+a
  CTQ30162.1   4 RKYFGTDGIRGRVGDAPITPEFVLKLGWAAGKVLARH-GSRKIIIGKDTRISGYMLESALEAGLAAAGLSASFTGPMPTPAIAYLTRAFRAEAGIVISA 101
                 579***********999******************96.************************************************************* PP

                 TTS-TTCCCEEEEETTTCE--CHHHHHHHHHHCCT CS
   PGM_PMM_I 100 SHnppeyngiKvylsnGgpispeveekIeaiieke 134
                 SHnp  +ngiK+++ +G +++++vee+Iea++eke
  CTQ30162.1 102 SHNPFYDNGIKFFSIEGTKLPDDVEEAIEAEMEKE 136
                 ********************************986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.93
                 EEETTTCE--CHHHHHHHHHHC CS
   PGM_PMM_I 111 vylsnGgpispeveekIeaiie 132
                 +   +G p+++e+ ++++a++e
  CTQ30162.1 378 FTEGSGNPLENEHVKAVTAEVE 399
                 5566677777777777766665 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.1   3.3e-34   1.2e-30       1     111 [.     258     366 ..     258     369 .. 0.94

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 3.3e-34
                  HHHHHHHHHHHHHHCH.CSTTTCEEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETTCEEEETTTBSS--HHHHHHHHHHHHH CS
  PGM_PMM_III   1 dgdqllallakyllee.klkpgagvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeSghiifldeattkDGilaallvleila 97 
                  dgdq+l+++a++ l++ +l++g   v+t+m++++le ++k+lgi++ ++kvGd+yvle+++e+g+ +G E+Sgh+i+ld++tt+DGi+a+l+v++++ 
   CTQ30162.1 258 DGDQILYIIAREGLRQgQLRGG--AVGTLMSNMGLELALKQLGIPFARAKVGDRYVLEMLQEKGWRIGAENSGHVILLDKTTTGDGIVASLQVVAAMV 353
                  79************99666644..6************************************************************************* PP

                  HHTS-HHHHHHHHH CS
  PGM_PMM_III  98 etgkslselleell 111
                  ++++sl++l+ + +
   CTQ30162.1 354 RNHMSLHDLC-SGM 366
                  *********9.555 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.1   3.4e-23   1.2e-19       2     103 .]     157     254 ..     156     254 .. 0.90
   2 ?   -3.6   0.0       4.9   1.8e+04      58      78 ..     378     398 ..     371     401 .. 0.71

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 3.4e-23
                 HHHHHGGGTS-HHHHHHHT-EEEEE-TT-TTHHHHHHHHHHTT-EEEES-----TT-TTSS----TT-TTTTHHHHGGGGG-SEEEEE-TTS-BEEEEE CS
  PGM_PMM_II   2 aYiealkekvdseaikksglkvvidplhGaggeilkellkelgvdvvelnaepdpdfptkapnpeekealkllielvkkegadlglafDgDaDRlgvvd 100
                 +Yie +k +++ + ++   lkvv+d++hGa+ +i++ +++elg++v+ + +epd+   ++     +  ++++l++ v +e+adlg+a DgD+DR+++vd
  CTQ30162.1 157 RYIEFCKGTFP-NELSLGTLKVVVDCAHGATYHIAPNVFRELGAQVIAMGCEPDGLNINEE--VGA-TDVRALQARVLAEKADLGIAYDGDGDRVIMVD 251
                 699*******9.5566666************************************998754..444.67999*************************** PP

                 TTE CS
  PGM_PMM_II 101 erG 103
                 ++G
  CTQ30162.1 252 HEG 254
                 998 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.9
                 -TTSS----TT-TTTTHHHHG CS
  PGM_PMM_II  58 fptkapnpeekealkllielv 78 
                 f +++ np e+e++k++ + v
  CTQ30162.1 378 FTEGSGNPLENEHVKAVTAEV 398
                 666777888888888877666 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.5   1.6e+04      28      39 ..     311     322 ..     303     322 .. 0.79
   2 !   56.2   0.5   7.9e-19   2.8e-15       1      73 [.     373     442 ..     373     443 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.5
                 CCCCCGCCEEEE CS
  PGM_PMM_IV  28 glkilledGrrl 39 
                 +l+ l e+G+r+
  CTQ30162.1 311 VLEMLQEKGWRI 322
                 577888999997 PP

  == domain 2  score: 56.2 bits;  conditional E-value: 7.9e-19
                 CCCCCHCC-TT..EECCCCCTTHHCCCCCCCCGCCEEEE.EEEETTCCEEEEEEEESSHHHHHHHHHHHHHHH CS
  PGM_PMM_IV   1 linvrveekakvvaalaallkvasikeglkilledGrrlavRpSGTepllrvyvEaksdeelarlaeevaell 73 
                 l+nvr++e  + + + + +++v  ++e+++ l+++Gr+l +R SGTepl+rv+vE+  +++++++a+++ae++
  CTQ30162.1 373 LVNVRFTEGSGNPLENEHVKAV--TAEVEAALGKRGRVL-LRKSGTEPLIRVMVEGEHEDQVHEFAHRIAEAV 442
                 79******98899*********..***************.******************************987 PP

>> DUF384  Domain of unknown function (DUF384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       3.9   1.4e+04      21      27 ..     264     270 ..     263     273 .. 0.76
   2 ?   10.7   0.1   0.00011      0.38       9      43 ..     404     438 ..     401     442 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3.9
      DUF384  21 YpilRel 27 
                 Y i+Re 
  CTQ30162.1 264 YIIAREG 270
                 8899985 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00011
      DUF384   9 rhgReyLRskgvYpilRelhkaekdeeveeaierl 43 
                 ++gR +LR+ g+ p++R + + e +++v e  +r+
  CTQ30162.1 404 KRGRVLLRKSGTEPLIRVMVEGEHEDQVHEFAHRI 438
                 78*********************999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3250.96
//
Query:       CTQ30163.1  [L=282]
Description: 7,8-dihydropteroate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-91  306.1   0.0    2.3e-91  305.8   0.0    1.0  1  Pterin_bind  Pterin binding enzyme


Domain annotation for each model (and alignments):
>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.8   0.0   1.3e-95   2.3e-91       1     244 []      18     257 ..      18     257 .. 0.99

  Alignments for each domain:
  == domain 1  score: 305.8 bits;  conditional E-value: 1.3e-95
                  EEEEETTTTTCHCCHHCTHHHHHHHHHHHHHHTT-SEEEEESS-TSTT--CCHHHHHHHHHHHHHHHHHHHCTSEEEEE-S-HHHHHHHHHTTSEEEE CS
  Pterin_bind   1 mgilNvtpdsfsdggkfedldkalaqarkmveeGAdilDiggestrPgaervdeeeelervvpvlealrdeadvpisiDttkaevaeaAlkagadivN 98 
                  mgilNvtpdsfsdgg +++l +a+++a+ m+++GA+i+DiggestrPga++v++eeel+rv+pv+ea++++++v+is+Dt+kaev+++  +aga+i+N
   CTQ30163.1  18 MGILNVTPDSFSDGGAHNSLIEAVKHANLMINAGATIIDIGGESTRPGAAEVSVEEELARVIPVVEAIAQRFEVWISVDTSKAEVIRQSARAGAHIIN 115
                  9************************************************************************************************* PP

                  ETTTTSSSTTHHHHHHHHT-EEEEESECSSTTTHCCCCCCCSSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHHTT CS
  Pterin_bind  99 dvsgeerdpkmlelvaeagaavvvmhmrgtpktmqeeegqyedvveeveaflearveaaeeaGvaperillDpgigfgkteehnlellrrldelreal 196
                  d++ ++ +p  l+ +ae+g++v++mhm+g+pktmqe + +yedv+++ve+f+++ + ++e+aG+a+e++llDpg+gfgk+  hn++ll+rl e+ +++
   CTQ30163.1 116 DIRSLT-EPGALQAAAETGLPVCLMHMQGQPKTMQEAP-KYEDVFADVERFFNEHIVRCEQAGIAKEKLLLDPGFGFGKNLSHNYQLLARLGEF-HHF 210
                  ******.*******************************.*******************************************************.*** PP

                  SSEBEEEGTTGHHHHHHHCTTCHGHHHHHHHHHHHHHHHTT-SEEEES CS
  Pterin_bind 197 evpvllGvSrksflgrllelgkaeeRdagtaaflalaaaaGadivrVh 244
                  ++p+l+G+Srks++g+ll++g ++eR  g++a++++aa++Ga+i+rVh
   CTQ30163.1 211 GLPLLVGMSRKSMVGQLLNVG-PSERLNGSLACAVIAAMQGAQIIRVH 257
                  ****************99555.9************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2251.69
//
Query:       CTQ30164.1  [L=647]
Description: protease, ATP-dependent zinc-metallo [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-73  245.4   0.1    6.5e-73  244.7   0.1    1.4  1  Peptidase_M41    Peptidase family M41
    2.5e-46  157.4   0.0    6.9e-46  155.9   0.0    1.8  1  AAA              ATPase family associated with various cellul
    3.9e-17   62.6   0.2    3.9e-17   62.6   0.2    1.8  2  FtsH_ext         FtsH Extracellular
    1.7e-11   43.7   0.1    3.4e-11   42.8   0.1    1.5  1  AAA_lid_3        AAA+ lid domain
    3.2e-06   27.2   0.0    1.6e-05   24.9   0.0    2.1  1  AAA_5            AAA domain (dynein-related subfamily)
    7.1e-06   25.5   0.0    1.3e-05   24.6   0.0    1.4  1  TIP49            TIP49 P-loop domain
    0.00026   20.8   0.0      0.001   18.9   0.0    2.0  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0019   18.4   0.0     0.0048   17.1   0.0    1.7  1  AAA_33           AAA domain
     0.0028   18.0   1.6      0.048   14.1   0.1    2.7  2  AAA_16           AAA ATPase domain
     0.0034   17.8   0.1     0.0091   16.4   0.1    1.7  1  CSTF2_hinge      Hinge domain of cleavage stimulation factor 
     0.0039   17.3   0.1      0.018   15.2   0.0    2.2  1  AAA_2            AAA domain (Cdc48 subfamily)
      0.004   16.9   0.0     0.0089   15.8   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
     0.0041   16.5   0.2     0.0096   15.3   0.2    1.5  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0067   16.7   0.4        0.2   11.9   0.1    2.8  3  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.024   15.1   0.7       0.23   12.0   0.1    2.5  2  ABC_tran         ABC transporter
      0.052   12.8   0.1       0.12   11.6   0.1    1.6  1  Zeta_toxin       Zeta toxin
      0.053   13.2   0.0       0.29   10.8   0.0    2.2  1  Sigma54_activat  Sigma-54 interaction domain
      0.072   12.6   0.2       0.22   11.0   0.2    1.8  1  AAA_7            P-loop containing dynein motor region
      0.099   12.1   0.3       0.24   10.8   0.3    1.6  1  PhoH             PhoH-like protein
       0.12   12.1   0.0       0.42   10.3   0.0    1.9  1  AAA_24           AAA domain
       0.13   12.4   0.0       0.35   11.0   0.0    1.7  1  Sigma54_activ_2  Sigma-54 interaction domain
       0.15   11.0   0.0       0.25   10.2   0.0    1.3  1  AAA_PrkA         PrkA AAA domain
       0.15   12.1   0.0       0.37   10.8   0.0    1.6  1  AAA_14           AAA domain
       0.16   12.2   0.0       0.37   11.0   0.0    1.7  1  AAA_28           AAA domain
       0.21   11.6   0.5        1.5    8.8   0.0    2.2  2  DUF4245          Protein of unknown function (DUF4245)


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.7   0.1     9e-76   6.5e-73       1     190 [.     404     594 ..     404     595 .. 0.98

  Alignments for each domain:
  == domain 1  score: 244.7 bits;  conditional E-value: 9e-76
                    XX--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS-----------TSS--BHHHHHHHHHHHHHHHHHHHHHHH..S-BGGGHHHHHHH CS
  Peptidase_M41   1 rvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgqalGltlslPeedklsltkeellarlavllGGraaEelifg..evttGasnDleka 94 
                    +v++e++k+ +AyHEaGHa++g l++e+dpv+KvtiiPRg+alG+t++lPe d +s+++++l +++++l+GGr+aEe+i+g  +v+tGasnD++ a
     CTQ30164.1 404 MVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKLESQISTLYGGRLAEEIIYGpeHVSTGASNDIKVA 499
                    689********************************************************************************************* PP

                    HHHHHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE-HHHHHH CS
  Peptidase_M41  95 tkiarkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreelealaeaLlekEtldaeeiee 190
                    t++ar+mvt++G+sdklGp+ + eee+ evflg++++k+k++s+eta++id+evk+l+e++y ra+++l+++++ l+a+ +aL+++Et+da +i++
     CTQ30164.1 500 TNLARNMVTQWGFSDKLGPLLYAEEEG-EVFLGRSVAKAKHMSDETARIIDQEVKSLIERNYGRARQLLNDNMDILHAMKDALMKYETIDAPQIDD 594
                    ************************998.89**************************************************************9986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.9   0.0   9.7e-49   6.9e-46       1     131 [.     191     323 ..     191     324 .. 0.97

  Alignments for each domain:
  == domain 1  score: 155.9 bits;  conditional E-value: 9.7e-49
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vl++GppGtGKTllaka+a e++v+f++isgs++++++vg +++++r++f++ak+ a p+i+fiDEida++++r    g+ ++e+e+++nq+l e+dg+
  CTQ30164.1 191 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRgagLGGGHDEREQTLNQMLVEMDGF 288
                 799*****************************************************9.****************9998899****************** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 + +e+ +ivi+atnrpd ldpallr gRfdr++ ++
  CTQ30164.1 289 EGNEG-IIVIAATNRPDVLDPALLRpGRFDRQVVVG 323
                 **866.*************************99876 PP

>> FtsH_ext  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.2   5.4e-20   3.9e-17       1     109 []       8      96 ..       8      96 .. 0.96
   2 ?   -2.4   0.1       8.3     6e+03       2      16 ..     109     123 ..     108     136 .. 0.65

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 5.4e-20
    FtsH_ext   1 illwlllallllllllslfggsgtgstkeisyseFledleqgnvekvvvqestisalirrptgdgvsttkkgnstttystptlgsvesleekLeealks 99 
                 ++lwl++a++l+ ++ s+  g +++ +++++ys+Fl++++q++v+++ +++ +i+            t+k++n++tty + +       ++kL ++l  
  CTQ30164.1   8 LILWLVIAVVLMSVFQSF--GPSESNGRKVDYSTFLQEVNQDQVREARINGREIN-----------VTKKDSNRYTTYIPVN-------DPKLLDNLLT 86 
                 69****************..***********************************...........****************.......8999999999 PP

    FtsH_ext 100 kgvdvesspq 109
                 k+v+v+++p+
  CTQ30164.1  87 KNVKVVGEPP 96 
                 9999998876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 8.3
    FtsH_ext   2 llwlllallllllll 16 
                 ++++ll++++ +++ 
  CTQ30164.1 109 WFPMLLLIGVWIFFM 123
                 677777777766665 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.1   4.7e-14   3.4e-11       1      45 []     346     390 ..     346     390 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 4.7e-14
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfee 45 
                 d+d + +A+ T+G+SGADla+l++eAal A r +   ++m +fe+
  CTQ30164.1 346 DIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEK 390
                 788888**********************************99986 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.2e-08   1.6e-05       1     136 [.     190     312 ..     190     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 2.2e-08
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrllle 97 
                 +vl+vGppGtgK+ la+ +a   + +++++ ++++ +    +g  ++           + ++a+   ++i+++DE++ + ++  + L    +er+  l+
  CTQ30164.1 190 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRV--------RD-MFEQAKkaAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN 279
                 59*******************************98765444444444........44.44455547899*************99999999999999988 PP

                 -SSSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  98 eggelvkaknddllerfrviatanpldrslnelspalrs 136
                 ++  +++  +    e + via++n++d     l+pal++
  CTQ30164.1 280 QMLVEMDGFE--GNEGIIVIAATNRPD----VLDPALLR 312
                 8777776544..235599999999999....88888875 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.7e-08   1.3e-05      25      89 ..     156     225 ..     137     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.7e-08
                 XXXXXXXXXXXXXXXXXXXXX....XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  25 glvGqkkareaagvivelike....kklaG...ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevy 89 
                  + G  +a+e +g +ve ++e    +kl+G   ++vL++Gp+gtGkt la ai+ e  ++vpf ++sgs++ 
  CTQ30164.1 156 DVAGCDEAKEEVGELVEYLREpsrfQKLGGkipKGVLMVGPPGTGKTLLAKAIAGE--AKVPFFTISGSDFV 225
                 56677888888888888887655556888844458*******************98..57*********875 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.4e-06     0.001      34      71 ..     189     227 ..     154     264 .. 0.71
   2 ?   -3.0   0.0       7.7   5.6e+03      36      55 ..     351     370 ..     334     393 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.4e-06
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklkitsgP.vlek 71 
                   vl++GpPG Gkt lak ia e +v + + sg   +e 
  CTQ30164.1 189 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSdFVEM 227
                 569***********************9988888623443 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.7
      RuvB_N  36 vllyGpPGlGkttlakiiak 55 
                 ++  G PG+  + la+++ +
  CTQ30164.1 351 IIARGTPGFSGADLANLVNE 370
                 56679999999999998865 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   6.7e-06    0.0048       2      39 ..     191     230 ..     191     262 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 6.7e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfg 39 
                 vl+vG+pG+GK+ la+ ++ + +  ++++s  ++ ++ +g
  CTQ30164.1 191 VLMVGPPGTGKTLLAKAIAGEAKvpFFTISGSDFVEMFVG 230
                 79****************9998888888888776665555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   6.7e-05     0.048      12      49 ..     170     213 ..     164     232 .. 0.72
   2 ?    2.0   0.0      0.34   2.5e+02     123     147 ..     236     259 ..     230     284 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.7e-05
      AAA_16  12 Llsalervrsgrp......elvllsGesGvGKsslvrellrale 49 
                 L ++l+  ++ +         vl +G++G+GK+ l+++++ +++
  CTQ30164.1 170 LVEYLREPSRFQKlggkipKGVLMVGPPGTGKTLLAKAIAGEAK 213
                 555555444444444555699***************99986655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.34
      AAA_16 123 lkrllallsrderplvlvlDdlqwa 147
                 ++++++++++ + p ++++D+++ +
  CTQ30164.1 236 VRDMFEQAKK-AAPCIIFIDEIDAV 259
                 5667788888.889*******9954 PP

>> CSTF2_hinge  Hinge domain of cleavage stimulation factor subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.3e-05    0.0091      36      80 ..     551     595 ..     539     596 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.3e-05
  CSTF2_hinge  36 qlKalaqqnpsqarelLkqnpqLayAllqalllmglvdpdvvtkv 80 
                  ++K+l++ n  +ar+lL++n ++ +A+  al+    +d   + ++
   CTQ30164.1 551 EVKSLIERNYGRARQLLNDNMDILHAMKDALMKYETIDAPQIDDL 595
                  69************************************9988765 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.5e-05     0.018       6      83 ..     191     262 ..     188     287 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.5e-05
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.....EEEEETGGG---- CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.....ivllDEidKihpk 83 
                 +l++gp g+Gkt+laka+a   +v    ++ ++  s++ e   +   v     a+     +e+       i+++DEid + ++
  CTQ30164.1 191 VLMVGPPGTGKTLLAKAIAGEAKV----PFFTISGSDFVE---MFVGVG----ASRVRDMFEQAKkaapcIIFIDEIDAVGRQ 262
                 6899******************98....***********9...222232....22222222222223467********99885 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.2e-05    0.0089      49      72 ..     190     213 ..     186     259 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgveav 72 
                 +++++Gp+G+GK+ la a++ ea 
  CTQ30164.1 190 GVLMVGPPGTGKTLLAKAIAGEAK 213
                 689****************98875 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.2   1.3e-05    0.0096      25      43 ..     191     209 ..     186     213 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.3e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +l+vGppG+GKt+lak+++
    CTQ30164.1 191 VLMVGPPGTGKTLLAKAIA 209
                   89**************986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   0.00028       0.2       9      29 ..     192     212 ..     188     243 .. 0.79
   2 ?    1.7   0.0      0.39   2.8e+02      79     104 ..     237     260 ..     230     297 .. 0.70
   3 ?   -2.1   0.0       5.8   4.1e+03      41      89 ..     533     584 ..     519     594 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00028
      AAA_22   9 vvtGesGtGKTtllrrlleql 29 
                 + +G++GtGKT+l++ ++ ++
  CTQ30164.1 192 LMVGPPGTGKTLLAKAIAGEA 212
                 569************998876 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.39
      AAA_22  79 lealeqalraravielliiDEaqhlr 104
                 ++++eqa +a+    ++ iDE++ + 
  CTQ30164.1 237 RDMFEQAKKAAP--CIIFIDEIDAVG 260
                 444444444443..6********984 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 5.8
      AAA_22  41 evvfvtlpsstsskdllrellralglelka...erlsseellealeqalrar 89 
                 +v++ +  s+++ + + +e+ + ++++  +     +++ ++l+a+ +al ++
  CTQ30164.1 533 SVAKAKHMSDETARIIDQEVKSLIERNYGRarqLLNDNMDILHAMKDALMKY 584
                 5556666666677777777777777655555555556666666666666555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00032      0.23      14      36 ..     191     213 ..     183     224 .. 0.90
   2 ?    0.1   0.0       1.5   1.1e+03      79     126 ..     431     505 ..     383     507 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00032
                 EEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllk 36 
                 v +vG+ G+GK+ L+k++ag+ k
  CTQ30164.1 191 VLMVGPPGTGKTLLAKAIAGEAK 213
                 679*****************976 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.5
                 H............................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT CS
                 x............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  79 n............................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkk 126
                 +                            +s++++e  +s+l    l+++++ ++p+++S G    +++a  l+++
  CTQ30164.1 431 HdpvhkvtiiprgralgvtfflpegdaisASRQKLESQISTLYGGRLAEEII-YGPEHVSTGASNDIKVATNLARN 505
                 1445555555556666666677667777677778888888888888888888.999******99999999988876 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00017      0.12      14      43 ..     186     213 ..     176     247 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00017
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerq 43 
                 + Pk +l++G pG GK+ la++++ e   +
  CTQ30164.1 186 KIPKGVLMVGPPGTGKTLLAKAIAGEA--K 213
                 679********************9986..4 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0004      0.29      22      46 ..     188     212 ..     172     263 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0004
                      SS-EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat  22 dlsvlitGesGtGKellaraiheas 46 
                      +  vl++G  GtGK+lla+ai  + 
       CTQ30164.1 188 PKGVLMVGPPGTGKTLLAKAIAGEA 212
                      5679****************97543 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00031      0.22      34      56 ..     189     211 ..     178     260 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00031
       AAA_7  34 kpvllvGptGtGKtviikdllkk 56 
                 k vl+vGp GtGKt+++k +  +
  CTQ30164.1 189 KGVLMVGPPGTGKTLLAKAIAGE 211
                 789*************9987655 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00034      0.24      22      41 ..     191     210 ..     186     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00034
                 EEEE--TTSSTTHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalav 41 
                 v ++Gp GtGKt+la a+a 
  CTQ30164.1 191 VLMVGPPGTGKTLLAKAIAG 210
                 7899***********99985 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00059      0.42       5      29 ..     191     216 ..     188     280 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00059
      AAA_24   5 iliyGpsgiGKTtlakel..gpkplfi 29 
                 +l++Gp+g+GKT lak +  +   + +
  CTQ30164.1 191 VLMVGPPGTGKTLLAKAIagE-AKVPF 216
                 7899************99742.33333 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00049      0.35      24      90 ..     191     268 ..     181     283 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00049
                      EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H...........HHHHHH...TTTSEEEEEE-TT--HHHHHHHH CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpwleifvverlaklp...........ldlleq...akggtLylkdiadlskaeqkeLl 90 
                      v+++G++G+gk+l A++++ ++     +f  +++++              d++eq   a + ++++ +i+  +++  ++L 
       CTQ30164.1 191 VLMVGPPGTGKTLLAKAIAGEAKV---PFFTISGSDFVemfvgvgasrvRDMFEQakkAAPCIIFIDEIDAVGRQRGAGLG 268
                      99****************976654...444445554333356777777799999944447889999999999988877775 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00035      0.25      58     143 ..     153     242 ..     138     247 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00035
    AAA_PrkA  58 afeedffGleet...iekiveyfraaaqrleerkqi...lyllGPvggGksslverlkklleaapiyalegsPvfeePlhlipeelrkklee 143
                  f+ d+ G +e+   +  +vey+r+ ++  +   +i   ++++GP g+Gk+ l++++     ++p++++ gs   e  +++ ++++r+++e+
  CTQ30164.1 153 TFA-DVAGCDEAkeeVGELVEYLREPSRFQKLGGKIpkgVLMVGPPGTGKTLLAKAIAGE-AKVPFFTISGSDFVEMFVGVGASRVRDMFEQ 242
                 566.777877652226689*****9986444333332225689***********999754.567************9999999999999987 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00052      0.37       5      76 ..     191     259 ..     188     296 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00052
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla...dpekllelileklkeekktylflDEiqev 76 
                 ++++G+  +GKT l+k ++ e       ++ i+  d  + ++      +++ +++ +  k+    ++f+DEi  v
  CTQ30164.1 191 VLMVGPPGTGKTLLAKAIAGEAK---VPFFTISGSD--FVEMFvgvGASRVRDMFEQA-KKAAPCIIFIDEIDAV 259
                 7889**************98887...4455555554..43322111122455666664.4458899******987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00051      0.37       2      28 ..     191     218 ..     190     249 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00051
      AAA_28   2 ivitGgestGKTtlleaLa.argypvvp 28 
                 + ++G+++tGKT l++a+a + ++p ++
  CTQ30164.1 191 VLMVGPPGTGKTLLAKAIAgEAKVPFFT 218
                 6789***************544777654 PP

>> DUF4245  Protein of unknown function (DUF4245)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0021       1.5       8      51 ..       3      46 ..       1      54 [. 0.75
   2 ?    0.4   0.1      0.83   5.9e+02       9      32 ..     105     128 ..     102     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0021
     DUF4245  8 dmvlSlavlvavvlvlvgltgrcsfnpgqvpevDvaaaletaar 51
                dm+  l++ +++++vl+ +++    ++++ ++vD+++ l++  +
  CTQ30164.1  3 DMAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQ 46
                888888888888886666666644444459**********9876 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.83
     DUF4245   9 mvlSlavlvavvlvlvgltgrcsf 32 
                 +++S  ++++++ v+++++++ + 
  CTQ30164.1 105 IFISWFPMLLLIGVWIFFMRQMQG 128
                 78999**************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 4378.16
//
Query:       CTQ30165.1  [L=209]
Description: 23S rRNA methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-58  195.9   0.0    7.2e-58  195.6   0.0    1.1  1  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.037   14.7   0.5        2.3    9.0   0.2    3.0  3  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.6   0.0   8.1e-62   7.2e-58       1     176 [.      31     206 ..      31     207 .. 0.99

  Alignments for each domain:
  == domain 1  score: 195.6 bits;  conditional E-value: 8.1e-62
                 CCCCHHHHHHHHHHHHT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHHTTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE--S-SS CS
        FtsJ   1 yrsRsayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvdlvvsDgapdv 99 
                 +rsR+++KL ei++  k+fkpg+tvvDlgaaPGgwsq++++++g++g+++a+Dl pm+p+ gv ++qgd++d+ + ++++e ++++kv++v+sD+ap++
  CTQ30165.1  31 LRSRAWFKLDEIQQSDKIFKPGMTVVDLGAAPGGWSQYAVTQIGNSGRIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNM 129
                 59******************************************9****************************************************** PP

                 -CHHHHHHHHHCCCCHHHHCCHCCCCECCCEEEECCCHCCCHHHHHHHHHCCEEEEEEEE-SS--CCG-EEEEEEEE CS
        FtsJ 100 sgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvcrg 176
                  g+ ++d  +++ L++ ale++ ++l+pgg+fv+k+f+ge ++++l++++++F kv+v+kP ssr +s+e+++v++g
  CTQ30165.1 130 CGTPAVDIPRAMYLVELALEMSRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 206
                 **************************************************************************998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.7   1.5e+04      30      41 ..      19      30 ..      15      43 .. 0.67
   2 ?    9.0   0.2   0.00026       2.3       1      30 [.      55      85 ..      55     159 .. 0.87
   3 ?    3.5   0.0     0.013   1.2e+02      12      36 ..     106     132 ..     102     184 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.7
                     SHHHHHHHHHHH CS
  Methyltransf_25 30 seemleaarera 41
                     s++++++a+++ 
       CTQ30165.1 19 SDKYVQQAQKKG 30
                     666677777665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00026
                     EEEET-TTSHHHHHHHCTST.SSEEEEEESS CS
  Methyltransf_25  1 vLdlGcGtGrltlalakrlg.kakvtgvDis 30
                     v+dlG+ +G +++++ +++g +++++++D+ 
       CTQ30165.1 55 VVDLGAAPGGWSQYAVTQIGnSGRIIACDLL 85
                     89**************999559*******85 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.013
                      HHHHHCTST..SSEEEEEESSHHHHHH CS
  Methyltransf_25  12 tlalakrlg..kakvtgvDiseemlea 36 
                      ++al++r+g  k +v++ D++++m+ +
       CTQ30165.1 106 LKALLERVGdsKVQVVMSDMAPNMCGT 132
                      567888885568999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1611.05
//
Query:       CTQ30166.1  [L=110]
Description: putative RNA-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-22   78.2   0.6    4.7e-22   77.9   0.6    1.1  1  CRS1_YhbY  CRS1 / YhbY (CRM) domain
  ------ inclusion threshold ------
       0.15   12.3   1.8       0.35   11.1   0.3    2.0  2  Tafi-CsgC  Thin aggregative fimbriae synthesis protein


Domain annotation for each model (and alignments):
>> CRS1_YhbY  CRS1 / YhbY (CRM) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.6   5.3e-26   4.7e-22       1      84 []      16      99 ..      16      99 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 5.3e-26
   CRS1_YhbY  1 LtekelrrLrhlairlkpkvkiGkaGvtkevvdeiheklkteelvkvkcegppalnmkrmaeiLeektgglviqrsgtsivLYR 84
                L++k++++L+ la+ lkp+v++G++G+t++v++ei+++l ++el+kvk+   + ++   ++e + ++tg+  +q++g+++vLYR
  CTQ30166.1 16 LSTKQKQHLKGLAHPLKPVVMLGNNGLTEGVLAEIEQALGHHELIKVKIASEDRETKALIVEAIVRETGACNVQVIGKTLVLYR 99
                6789*********************************************7777787999************************9 PP

>> Tafi-CsgC  Thin aggregative fimbriae synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   3.9e-05      0.35      48      74 ..       5      31 ..       2      36 .. 0.87
   2 ?    0.1   0.1      0.11   9.5e+02      20      39 ..      72      91 ..      60      94 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.9e-05
   Tafi-CsgC 48 qstsrqskelslsanqpialgklrlni 74
                qs+ +q+++++ls++q+++l  l   +
  CTQ30166.1  5 QSQRKQKNTMNLSTKQKQHLKGLAHPL 31
                89*****************98887655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.11
   Tafi-CsgC 20 ytivPevsltkaCvCqvqvl 39
                  ++ e  + ++ +C+vqv+
  CTQ30166.1 72 KALIVEAIVRETGACNVQVI 91
                45556666778888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 980.79
//
Query:       CTQ30167.1  [L=158]
Description: transcription elongation factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-32  111.9   1.6    1.7e-32  111.4   1.6    1.3  1  GreA_GreB_N    Transcription elongation factor, N-terminal
    7.7e-30  102.6   0.2    1.1e-29  102.1   0.2    1.2  1  GreA_GreB      Transcription elongation factor, GreA/GreB, C-
  ------ inclusion threshold ------
      0.058   13.4   0.2       0.64   10.0   0.1    2.1  2  DDR_swiveling  DD-reactivating factor swiveling domain


Domain annotation for each model (and alignments):
>> GreA_GreB_N  Transcription elongation factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   1.6   2.9e-36   1.7e-32       1      71 []       4      74 ..       4      74 .. 0.99

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 2.9e-36
                 EEE-HHHHHHHHHHHHHHHHXHHHHHHHHHHHHHHHSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHTEEE CS
  GreA_GreB_N  1 iylTkegyekleeeLeelktverpeiaeaikeareeGDlsENaeYdaAkeeqaeiearIreLedkLanaev 71
                 i++T  g ekl+eeL++lk+v+rpei++ai+eare+GDl+ENaeY+aA+e+q+++e+rI+++e+kL+na+v
   CTQ30167.1  4 IPMTLRGAEKLREELDYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQV 74
                 69*******************************************************************98 PP

>> GreA_GreB  Transcription elongation factor, GreA/GreB, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.2   1.8e-33   1.1e-29       3      77 .]      83     157 ..      80     157 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 1.8e-33
                 .SS--TT-EEEEE-.SS--EEEE----TTT-BS-SSB--TTSHHHHHHTT--TT-EE---BTTB---EEEEEEX. CS
   GreA_GreB   3 kdvVtfGstVtledldtgeeetytiVgpdeadpskgkiSveSPlGkaLlgkkvGdevevkapsgkikveIlkiey 77 
                 +++V fGstV++ +ldt+ee+ty+iVg dead ++++iSv+SP+++ L+gk+++d+v++++p+g++++eI+k+ey
  CTQ30167.1  83 NGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVTIRTPGGEVEYEITKVEY 157
                 59***********************************************************************98 PP

>> DDR_swiveling  DD-reactivating factor swiveling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.043   2.6e+02      19      57 ..      86     123 ..      78     124 .. 0.75
   2 ?   10.0   0.1   0.00011      0.64     140     162 .]     124     148 ..     120     148 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.043
  DDR_swiveling  19 lgvGetvkleelekakkeeevivvvpkevdfeeaaklin 57 
                    +  G tv++ +l++ ++ +++ +v ++e+df++    +n
     CTQ30167.1  86 VIFGSTVSVLNLDTDEE-QTYRIVGDDEADFKQNLISVN 123
                    55799999999987655.567778899999998777666 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00011
  DDR_swiveling 140 vPvaraliGnrs..avviktPkGdv 162
                     P+ar liG+     v i+tP G+v
     CTQ30167.1 124 SPIARGLIGKEQddVVTIRTPGGEV 148
                    6********875225779*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1231.59
//
Query:       CTQ30168.1  [L=477]
Description: D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-170  567.5   0.0     2e-170  567.3   0.0    1.0  1  Peptidase_S13    D-Ala-D-Ala carboxypeptidase 3 (S13) family
    4.5e-06   26.4   0.3    0.00026   20.6   0.2    2.9  2  Beta-lactamase2  Beta-lactamase enzyme family
  ------ inclusion threshold ------
      0.068   12.4   1.3       0.45    9.7   0.0    2.4  2  Transpeptidase   Penicillin binding protein transpeptidase do
       0.33   10.7   1.5       0.37   10.5   0.1    1.7  2  TrbL             TrbL/VirB6 plasmid conjugal transfer protein


Domain annotation for each model (and alignments):
>> Peptidase_S13  D-Ala-D-Ala carboxypeptidase 3 (S13) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  567.3   0.0  4.4e-174    2e-170       2     443 ..      20     468 ..      19     469 .. 0.99

  Alignments for each domain:
  == domain 1  score: 567.3 bits;  conditional E-value: 4.4e-174
                    HHHHHHHHTT.GCGTTSEEEEEEEETTTTEEEEEESTTSEB--GGGHHHHHHHHHHHHT-TT-EEEEEEEESSEEETTEEESCEEEEECSBTTBBH CS
  Peptidase_S13   2 aanldeilad.peLegavagvvvqdaetgkelydhqgdtpllPAStqKllTAaaAlltLganfrftTevvaegtvenrnlegnlvlvgsGDPtLsa 96 
                    aan+de++++ p+  ga+++++ q++ ++++ +d+++++++lPAStqK++TA+aAll+Lg++frftT+++++g+++++ l+g+l+++++GDPtL++
     CTQ30168.1  20 AANIDEYINQlPA--GANLAFMAQKVGASTPEIDYHSQQMALPASTQKVITALAALLQLGPDFRFTTTLETKGSLDGGVLKGDLIARFGGDPTLKR 113
                    79***********..********************************************************************************* PP

                    HHHHHHHHHHHHTT-SEESS-EEEE-TTC-S-SS-TTSBGGGTTBGGG----SS-SGGGEEEEEEE-.SSTTSB-EEEECTTTTTCEEEEEEE..E CS
  Peptidase_S13  97 edldalaeelkksGvtkiegelvvDdslfaserlapgwewaDltsgysapieaaiidagvvivevtp.qkeGetaavtvsakiaiaalknvkv..e 189
                    +d+++++++lkk+Gv+ ieg++++D+s+fas+++apgw+w+Dlt+++sap++aai+d+++++v++++ qk+G+ a+++v+++++i+++++v++  +
     CTQ30168.1 114 QDIRNMVATLKKAGVQRIEGNVLIDTSVFASHDKAPGWPWNDLTQCFSAPPAAAIVDRNCFSVSLYSaQKPGDVAFIRVASYYPITMFSQVRTlaR 209
                    **********************************************************************************************9* PP

                    ESTTSCCEEEEEEECTSSEEEEEEEEETTSS-EEEEEE-SSHHHHHHHHHHHHHHHTT-EESS-EEEESS-.TTSEEEEEEEECEHHHHHHHHHHH CS
  Peptidase_S13 190 taaeaekkkliersfgtntlkvtGslpedaeplklslavqdpaayagallkkkLkeqGitvsgevgiaeap.esaevlashqSaPLsellkkmmkk 284
                    ++ ea++++l++++ + n++++tG+lp+++epl+l++a+qd a+yaga+lk +L+++Git sg++++++   e ++vla  qSaPL++ll  m+kk
     CTQ30168.1 210 GSSEAQYCELDVVPGDLNRYTLTGCLPQRSEPLPLAFAIQDGASYAGAILKAELAQAGITYSGTLLRQTLAnEPGTVLATSQSAPLHDLLRIMLKK 305
                    *********************************************************************8889*********************** PP

                    T-HHHHHHHHHHHHHHH.CS-BSHHHHHHHHHHHH.HHTT--CTTSB-S-SSS-STT-BBEHHHHHHHHHHHHCTCCHHHHHHCS-BTTTSGGGTT CS
  Peptidase_S13 285 SdNliAesllrevakei.krpgsfeagldavrerL.skagidtanlvLeDgSGLSrknlvtaktlaqlLeaiadqpalqalldsLPvAGesGtlen 378
                    SdN+iA++++r +++++  +pg+++ag+davr++L ++ag+d++n++++DgSGLSr+nl++++t++q+L++ia+++++ +++++LP+AG++G+l++
     CTQ30168.1 306 SDNMIADTVFRTIGHARfGVPGTWRAGSDAVRQILrQQAGVDLGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDTELNFISMLPLAGHDGSLQY 401
                    *****************9*****************999********************************************************** PP

                    SSTHCTTTTTTTEEEEEEEETTEEEEEEEEESTTSEEEEEEEEEES..SSCCCTHHHHHHHHHHHHH CS
  Peptidase_S13 379 rfkltstpavGkvraKTGsLtgvssLaGyvttasGeklaFsfllng..ldeedgknirdaldellae 443
                    r++l++++++Gkv+aKTGsL+gv++LaG++ttasG+k+aF+++l+g  ++++d++n+r +l++++++
     CTQ30168.1 402 RAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQKMAFVQYLSGyaVEPADQRNRRIPLVRFESR 468
                    ***************************************************************9987 PP

>> Beta-lactamase2  Beta-lactamase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.056   2.5e+02       5      33 ..      48      76 ..      45     131 .. 0.76
   2 !   20.6   0.2   5.9e-08   0.00026      64     201 ..     291     442 ..     273     443 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.056
                     SEEEESTTS-EE-GGGGHHHHHHHHHHHH CS
  Beta-lactamase2  5 eelgvnadeefpaaStiKvpillalleav 33
                      e+++ +++    aSt Kv  +la+l ++
       CTQ30168.1 48 PEIDYHSQQMALPASTQKVITALAALLQL 76
                     5789999999999*******997776654 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 5.9e-08
                      SEEEHHHHHHHHHHTT-HHHHHHHHHHH.............THHHHHHHHHHCTHTTSB--SHTTCCHHHTTSSTTEE-HHHHHHHHHHHHHTT CS
  Beta-lactamase2  64 ktlslrdlltlmiavSDNtAtnlLidrl.............gleavnawlkelglretrlrrklpdleaadkdkrntttardlarllealarge 144
                      ++ +l dll+ m++ SDN  ++ + + +             g +av ++l+++  +++ l+++  + ++   ++ n + ++ +++ l+ +a+ +
       CTQ30168.1 291 QSAPLHDLLRIMLKKSDNMIADTVFRTIgharfgvpgtwraGSDAVRQILRQQ--AGVDLGNTIIA-DGSGLSRHNLIAPATMMQVLQYIAQHD 381
                      467999********************995555555555555566666666665..45555555433.34558899*****************86 PP

                      SSHHHHHHHH..HHT-STTTTTTTTTT...TTSEEEEEEEEETTEEEEEEEEEE.TTEEEEEE CS
  Beta-lactamase2 145 llspeellei..lsnqqfrdrlaaglp...egvrvahKtGeldgvrhdvGivya.dgrpyvva 201
                            ++++  l   + + + +agl     + +v  KtG+l gv + +G++++ +g++ +++
       CTQ30168.1 382 TELN--FISMlpLAGHDGSLQYRAGLHqagVDGKVSAKTGSLQGVYNLAGFITTaSGQKMAFV 442
                      4333..355544777788888899998766777*********************999998876 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0001      0.45      30      58 ..      45      73 ..      22      90 .. 0.84
   2 ?    0.8   0.2     0.051   2.3e+02     226     253 ..     394     425 ..     381     456 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0001
                    TCGCCSTHHHH--BB-GGGGHHHHHHHHH CS
  Transpeptidase 30 kneplanravqsqyePGStfKvvtaaaal 58
                     ++p   +  q+ + P+St Kv+ta+aal
      CTQ30168.1 45 ASTPEIDYHSQQMALPASTQKVITALAAL 73
                    5666677889999************9998 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.051
                     HHCTTTTGCG..TCTTS..--EEEEEEEEECS CS
  Transpeptidase 226 vsrgsgtata..avegy..kvagKTGTAevag 253
                      ++gs +++a  +++g+  kv++KTG  + ++
      CTQ30168.1 394 GHDGSLQYRAglHQAGVdgKVSAKTGSLQGVY 425
                     55565555556655555559******987765 PP

>> TrbL  TrbL/VirB6 plasmid conjugal transfer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       0.8   3.6e+03      32      73 ..       9      48 ..       6      75 .. 0.53
   2 ?   10.5   0.1   8.2e-05      0.37      10      94 ..     299     385 ..     298     394 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.8
        TrbL 32 gliaalatnwggyativvdsfaglpeaaggallssagsstsp 73
                gl a++a+++   a ++ + +++lp++a  a++++   +++p
  CTQ30168.1  9 GLTAGIALSA--QAANIDEYINQLPAGANLAFMAQKVGASTP 48
                5555555552..222244455555555555555554444444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 8.2e-05
        TrbL  10 yaialgaieepiaelvkrllklgliaalatnwggyativvdsfag.lpeaaggallssagsstsp.tldql..gldvadklleqassls 94 
                 ++i+l ++++ ia+ v+r++  + + +  ++w + +++v +++ + ++ ++g+++++ ++ ++      +   +++v++ + +++ +l+
  CTQ30168.1 299 LRIMLKKSDNMIADTVFRTIGHARFGV-PGTWRAGSDAVRQILRQqAGVDLGNTIIADGSGLSRHnL-IAPatMMQVLQYIAQHDTELN 385
                 689********************9998.9****************************9999886653.332367888888888887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3438.45
//
Query:       CTQ30169.1  [L=392]
Description: GTPase involved in cell partioning and DNA repair [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-59  199.8   5.7    2.6e-59  199.3   5.7    1.2  1  GTP1_OBG     GTP1/OBG
    8.8e-24   83.8   0.0    1.6e-23   82.9   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
    6.6e-10   38.7   0.0      4e-07   29.7   0.0    2.1  2  FeoB_N       Ferrous iron transport protein B
     0.0098   14.9   0.5        1.3    8.0   0.0    2.2  2  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
  ------ inclusion threshold ------
      0.046   13.6   0.0       0.33   10.8   0.0    2.1  2  RsgA_GTPase  RsgA GTPase
       0.13   12.0   0.0        7.1    6.3   0.0    2.3  2  ATP_bind_1   Conserved hypothetical ATP binding protein
       0.16   11.3   0.0       0.24   10.7   0.0    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region


Domain annotation for each model (and alignments):
>> GTP1_OBG  GTP1/OBG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.3   5.7     1e-62   2.6e-59       1     154 [.       4     157 ..       4     158 .. 0.99

  Alignments for each domain:
  == domain 1  score: 199.3 bits;  conditional E-value: 1e-62
                 EEEEEEEEE----------BEEETTCCCEEB-S--------EEEEE-TT--SSGCCCTSSEEE-------BTTTB-------EEEEESTTEEEEETTTT CS
    GTP1_OBG   1 vdevkikvkaGkGGdGcvsfrrekyvpkggpdGGdGGkGGdvileadeklntlldlkykkkikAenGenGkgknksGkkgkdlvikvPvgtvvkdeetg 99 
                 vde++i v aG+GG+Gcvsfrreky+pkggpdGGdGG+GGdv+leade+lntl+d++++k ++Ae+G+nG++++++Gk+gkd+++kvPvgt v d+ tg
  CTQ30169.1   4 VDEATILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGDVWLEADENLNTLIDYRFEKSFRAERGQNGQSRDCTGKRGKDVTVKVPVGTRVIDQGTG 102
                 79************************************************************************************************* PP

                 EEEEEE-STT-EEEEE-----EE-GGGC-CSSCSS--EEEE-----EEEEEEEEC CS
    GTP1_OBG 100 evladltedgeevlvakGGkgGkGnaafksstnraprfaekGeegeereleLelk 154
                 e++ d+t++g++++vakGG +G+Gn++fkss nr+pr++++G++g++r+l+Lel 
  CTQ30169.1 103 ETMGDMTKHGQRLMVAKGGWHGLGNTRFKSSVNRTPRQKTMGTPGDKRDLQLELM 157
                 *****************************************************96 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   6.3e-27   1.6e-23       1     114 []     161     284 ..     161     284 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 6.3e-27
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT.......TTCS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg.keielvDtpGliegaseekglgkaflalee.adlillvvdas.......eekl 90 
                 +v+ +G+pN+GKSt+i+a + +k +v+d+p+tT+ +  g v++++ k+++++D+pGliega e+ glg +fl++ e + ++l+++d+         e+ 
  CTQ30169.1 161 DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNeKSFVVADIPGLIEGAAEGAGLGIRFLKHLErCRVLLHLIDIDpidgsdpVENA 259
                 5899*************************************988889**************************9998*********9998886663334 PP

                 HHHHHHHHHHHHH.TTSEEEEEEES CS
    MMR_HSR1  91 kpldeeleellee.akkplilvlnk 114
                 + +  ele++ e+ a kp  lv+nk
  CTQ30169.1 260 RIIIGELEKYSEKlASKPRWLVFNK 284
                 5566778888777999*******98 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.6e-10     4e-07       3      57 ..     162     217 ..     160     247 .. 0.93
   2 !    7.1   0.0    0.0014       3.7     106     153 ..     276     325 ..     269     328 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.6e-10
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT.EEEEEEE---- CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg.keveivDlPGi 57 
                 v ++G pn+Gk+t++ a++ ak kv+ +p +t   + g +++++ k++ + D+PG 
  CTQ30169.1 162 VGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNeKSFVVADIPGL 217
                 6789*************************************98878999******6 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0014
                 SSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-..EEEEBTTTTBTHHHHH CS
      FeoB_N 106 vpvvlalnmideaekkgieidlkkLsekLgvp..vvktsakkkegieell 153
                 +p  l++n+id ++k++ e  +k+++e+Lg +     +sa++++g++el 
  CTQ30169.1 276 KPRWLVFNKIDLMDKAEAEAKAKAIAEALGWEekFYLISAASQQGVKELC 325
                 577899************************753378999*******9985 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0005       1.3      32      50 ..     162     180 ..     158     185 .. 0.89
   2 !    5.2   0.2    0.0036       9.2     173     235 ..     281     338 ..     258     370 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0005
                 EEEEE-TTSSHHHHHHHHH CS
        MeaB  32 vGltGvPGaGkstlvealg 50 
                 vG+ G+P aGkst++ a+ 
  CTQ30169.1 162 VGMLGMPNAGKSTFIRAVS 180
                 9**************9986 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0036
                 EEE---HHHHHHHHHHHHHHHHHCSTTBTTB--EEEEEBCCCTBSHHHHHHHHHHHHHHHHHT CS
        MeaB 173 vvnkaDkkeaekaarelraaleleeekekeWrpkvlktsavegeGidelvdaieehrevlkkt 235
                 v nk D+ + ++a+++ +a       +  +W+ k   +sa  ++G++el+  +  +       
  CTQ30169.1 281 VFNKIDLMDKAEAEAKAKA-----IAEALGWEEKFYLISAASQQGVKELCWDVMTFIIENPIV 338
                 5566664443333333332.....234568*******************99998876443333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.37   9.4e+02     104     121 ..     164     181 ..     148     188 .. 0.80
   2 ?   10.8   0.0   0.00013      0.33      50      93 ..     279     324 ..     266     332 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.37
                  EECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 104 lvGqSGvGKStLinallp 121
                  ++G   +GKSt+i a+  
   CTQ30169.1 164 MLGMPNAGKSTFIRAVSA 181
                  5677789******98765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00013
                  EEEEE-GGG--HHHHHHHHHHHHHH..TTSEEEE--TTTHTTHHHH CS
  RsgA_GTPase  50 vivlnKiDlleeeeeleelkeelea..lgyevllvsaktkegleel 93 
                   +v+nKiDl++++e+  + k+  ea  ++ +++l+sa +++g++el
   CTQ30169.1 279 WLVFNKIDLMDKAEAEAKAKAIAEAlgWEEKFYLISAASQQGVKEL 324
                  69***********955555555554116678999999999999988 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0028       7.1       2      21 ..     165     184 ..     164     194 .. 0.87
   2 ?    3.6   0.0      0.02        50      89     182 ..     205     302 ..     187     346 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0028
  ATP_bind_1   2 vGpaGsGKttfvgalseile 21 
                 +G++ +GK+tf++a+s   +
  CTQ30169.1 165 LGMPNAGKSTFIRAVSAAKP 184
                 7*************998655 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.02
  ATP_bind_1  89 eeddyllfDtPGQielfthsesl.akiveeLesefalvvvyLvDsqrltd..ptkfisgllsalsamlr..lelPhvvvlnkfDllkek.lekeleffe 181
                 +e+++++ D+PG ie     + l  +++++Le+    v ++L+D   ++   p++    ++  l    +  ++ P   v+nk+Dl+++  +e + + + 
  CTQ30169.1 205 NEKSFVVADIPGLIEGAAEGAGLgIRFLKHLER--CRVLLHLIDIDPIDGsdPVENARIIIGELEKYSEklASKPRWLVFNKIDLMDKAeAEAKAKAIA 301
                 366888888888888776666551445555553..4455556655555433354444444433333322114568899999999988667666555555 PP

  ATP_bind_1 182 d 182
                 +
  CTQ30169.1 302 E 302
                 4 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.2e-05      0.24       5     138 ..     165     302 ..     162     322 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.2e-05
   Gtr1_RagA   5 mGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafvee..ylssqkeeifrnvgvliyVfDvesreleedletlkei 101
                 +G  ++GK++  + + +   ++ + +  +t   +   vr+ ++  + + D++G  +  +e   l     + ++++ vl++++D++  + ++ +e+ + i
  CTQ30169.1 165 LGMPNAGKSTFIRAV-SAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLIEGAAEgaGLGIRFLKHLERCRVLLHLIDIDPIDGSDPVENARII 262
                 677777777776666.455666666667777788888999999999999999998888775566777788899************999*********** PP

   Gtr1_RagA 102 lealrqyspeakv...fvlihKmDliqedereeifeerke 138
                 + +l +ys+++     +   +K+Dl+++ e e   ++++e
  CTQ30169.1 263 IGELEKYSEKLASkprWLVFNKIDLMDKAEAEAKAKAIAE 302
                 ********99865222577799999988777766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2838.04
//
Query:       CTQ30172.1  [L=85]
Description: 50S ribosomal protein L27 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-39  133.2   2.5    2.7e-39  133.1   2.5    1.0  1  Ribosomal_L27  Ribosomal L27 protein


Domain annotation for each model (and alignments):
>> Ribosomal_L27  Ribosomal L27 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1   2.5   1.5e-43   2.7e-39       1      79 []       2      82 ..       2      82 .. 0.96

  Alignments for each domain:
  == domain 1  score: 133.1 bits;  conditional E-value: 1.5e-43
  Ribosomal_L27  1 AhkkagGstkngrdskgkrlGvKkfggqlvkagnIivrQrgtkfhpGenvgiGkdhtlfAlvdGvVkfe..kkkkrkyvsv 79
                   AhkkagGst+ngrds++krlGvK+fgg++v ag+IivrQrgtkfh+G+nvg+G+dhtlfAl+dG+Vkfe    k+rk++s+
     CTQ30172.1  2 AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFALTDGKVKFEvkGPKNRKFISI 82
                   9********************************************************************754789***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       170  (0.00948185); expected 358.6 (0.02)
Passed bias filter:                      156  (0.00870099); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 694.48
//
Query:       CTQ30173.1  [L=129]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1145.16
//
Query:       CTQ30174.1  [L=103]
Description: 50S ribosomal protein L21 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-37  126.1   3.0    5.9e-37  126.0   3.0    1.0  1  Ribosomal_L21p  Ribosomal prokaryotic L21 protein


Domain annotation for each model (and alignments):
>> Ribosomal_L21p  Ribosomal prokaryotic L21 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   3.0   3.3e-41   5.9e-37       1     101 []       1     101 [.       1     101 [. 0.99

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 3.3e-41
                     XEEEEECSTEEEEESSSEEEEEESSSSSTTCEEEESSEEE....EE.ECTSSSESSTCEEEEEEEEEE---EEEEEEETTTTEEEEEEE--EEEE CS
  Ribosomal_L21p   1 myAiietgGkqykVeegdvlkvekleaevgdkveldkVllvgskddvkvGaplvegakVeaevvehgkgkkiivfkkkrrknyrrkqghRqkytk 95 
                     myA+++ gGkq++V+eg+++++ekl+ + g+ ve+ +Vl++ + +++k+G p+veg  ++aevv+hg+g+k++++k++rrk+yr++qghRq++t 
      CTQ30174.1   1 MYAVFQSGGKQHRVSEGQTVRLEKLDIATGEAVEFAEVLMIANGEEIKIGVPFVEGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTD 95 
                     9********************************************************************************************** PP

                     EEEEEE CS
  Ribosomal_L21p  96 lrItkI 101
                     ++It+I
      CTQ30174.1  96 VKITGI 101
                     ****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 924.34
//
Query:       CTQ30175.1  [L=323]
Description: octaprenyl diphosphate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-75  253.6   0.2    1.8e-75  253.3   0.2    1.1  1  polyprenyl_synt  Polyprenyl synthetase
  ------ inclusion threshold ------
       0.09   12.1   0.2       0.36   10.1   0.2    1.8  2  UbiA             UbiA prenyltransferase family
       0.11   12.1   0.1       0.17   11.5   0.1    1.3  1  HEPPP_synt_1     Heptaprenyl diphosphate synthase (HEPPP synt


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.3   0.2     3e-79   1.8e-75       2     243 ..      30     263 ..      29     275 .. 0.95

  Alignments for each domain:
  == domain 1  score: 253.3 bits;  conditional E-value: 3e-79
                      HHHHHHHHHHHHSSS--HHHHHHHHHHHHHSCGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHH CS
  polyprenyl_synt   2 elleealeylveagGKrlRpllvllaaealkeeeeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrlvGnklAindgdfllaraf 95 
                      +l++++  y+v+ gGKr+Rp++ +laa+a++ ++   + + ++a+ +e++h+a+L+hDD++D+s++RRG+ +a++++Gn++++++gdf+++raf
       CTQ30175.1  30 QLINQLGYYIVSGGGKRIRPMIAVLAARAVG-YQ--GSAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAF 120
                      67889999***********************.44..3789****************************************************** PP

                      HHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt  96 ellaklfekslellelfsevllqtveGqlldleeekdddlskfsleeyleivkyKTaylfalpvalaallagasdeelealkdiglelGlaFQi 189
                      +++++l  +sl++le++se++  ++eG++l+l++ +d+d++   +e+y+++++ KTa lf+++ ++a lla+++ ee +al+d+g++lG+aFQ+
       CTQ30175.1 121 QMMTQL--GSLKILEVMSEAVNVIAEGEVLQLMNVNDPDIT---EENYMRVIYSKTARLFEAASQCAGLLADCTAEEERALQDYGRYLGTAFQL 209
                      ******..*************************99999999...*****************************9999***************** PP

                      HHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHTTSSH CS
  polyprenyl_synt 190 qDDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvlkeilgkka 243
                      +DD+lD+++d e lgK++g+D++egk tlp+l+a+++ +p+q + ++ ++++ +
       CTQ30175.1 210 IDDLLDYSSDGERLGKNVGDDLNEGKPTLPLLHAMHHGTPDQSAMIRGAIEQGN 263
                      *******************************************99999988655 PP

>> UbiA  UbiA prenyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2     6e-05      0.36     128     191 ..      50     111 ..      34     132 .. 0.83
   2 ?   -1.5   0.0       0.2   1.2e+03     169     183 ..     228     242 ..     225     248 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6e-05
        UbiA 128 lppllgwaavtgslsllalllalavflltwaialandlrdregDrkagiktlpvvlGrkaaril 191
                 ++++l++ av+ + s+ + ++al+ f++t+++++  d+ d e+D ++g+ t  + +G++a++ +
  CTQ30175.1  50 MIAVLAARAVGYQGSAHVTIAALIEFIHTATLLHD-DVVD-ESDMRRGKATANAAFGNAASVLV 111
                 77888888899999********************9.7776.77899999999999999999875 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.2
        UbiA 169 egDrkagiktlpvvl 183
                  +D++ g++tlp+++
  CTQ30175.1 228 GDDLNEGKPTLPLLH 242
                 588*********987 PP

>> HEPPP_synt_1  Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.8e-05      0.17      28     110 ..      57     146 ..      45     183 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.8e-05
  HEPPP_synt_1  28 aeltekekeeyiltam..lvqiAldtHdkvsek.keeeeeekkn....rqLtVLAGdyYSglYYklLaevkdielirllaeaikeinehk 110
                   + +  +   +++++a+  ++++A   Hd v ++ + ++ +++ n        VL Gd+     ++++ +++ ++++++++ea+  i e  
    CTQ30175.1  57 RAVGYQGSAHVTIAALieFIHTATLLHDDVVDEsDMRRGKATANaafgNAASVLVGDFIYTRAFQMMTQLGSLKILEVMSEAVNVIAEGE 146
                   5555566677777776336999*****9998874555666666612224568********************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 2827.09
//
Query:       CTQ30176.1  [L=90]
Description: DNA-binding transcriptional activator of maltose metabolism [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-34  117.6   0.2    2.1e-34  117.4   0.2    1.0  1  HTH_35    Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> HTH_35  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.2   1.2e-38   2.1e-34       1      74 [.       6      80 ..       6      81 .. 0.98

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 1.2e-38
      HTH_35  1 dWhpadIiAaLrkrgttLaalsreaglssstlsnaltrpwpkgEalIAeaLgvppeeiwPsRYekd.tkkilsrk 74
                dWhpadI+A Lrkrgt+Laa sr++glssstl+naltrpwpkgE +IA aL+++p +iwPsRY++  t+++++r+
  CTQ30176.1  6 DWHPADIVAGLRKRGTSLAAESRRHGLSSSTLANALTRPWPKGELIIATALETQPWVIWPSRYHDPvTHEFIDRT 80
                9*****************************************************************9***99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 802.96
//
Query:       CTQ30177.1  [L=419]
Description: UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.3e-132  440.2   0.3   7.2e-132  440.0   0.3    1.0  1  EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvin


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  440.0   0.3    4e-136  7.2e-132       1     417 []       6     406 ..       6     406 .. 0.98

  Alignments for each domain:
  == domain 1  score: 440.0 bits;  conditional E-value: 4e-136
                    EECSS--EEEEE--B-HHHHHHHHHHHGGGBSS.EEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-HHHHTT-GGGGGGH CS
  EPSP_synthase   1 vekgkrlegevkvpGsksisnralllAaLaege.stitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeapeelvldlgnsgtal 95 
                    v++++rl+gev+++G ++++++++l++aL+++e ++i+n+++++D+++++++l +Lg   +k++++++v+i++g    f+ap++lv+++++s++al
     CTQ30177.1   6 VQGPTRLQGEVTISG-AKNAALPILFSALLAEEpVEIQNVPKLKDIDTTMKLLSQLG---AKVERNGSVWIDAGPVDVFCAPYDLVKTMRASIWAL 97 
                    5899***********.**************9999***********************...588899****************************** PP

                    HHHHHHHSEESSEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEETSS-BEEEEETSSTTHHHHHHHHHHHTTSBSEEEEES-TTH CS
  EPSP_synthase  96 rlLtallalasgevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkglklkgveikaevsSqqvtsllllaallaegtteleelase 191
                    ++L+a++++   +v+L+G+++i++RP+d ++++L+qlGaei++eeg++ka++     +lkg++i ++++S+++t ++++aa+laegtt++e++a+e
     CTQ30177.1  98 GPLVARFGQG--QVSLPGGCAIGARPVDLHISGLEQLGAEIKLEEGYVKASVS---GRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAARE 188
                    ********97..8***************************************8...8*************************************** PP

                    HHHHHHHHHHHHTT-EEEETTSSEEEEEE--SSB--EEEE--B-HHHHHHHHHHHHHTT-EEEEES--GGGGHHH..HHHHHHHHTTEEEEEESTS CS
  EPSP_synthase 192 psiddtlkmlkkfgikietsgteesitvkGkeklpgteyvvegDassAayflvaAaitggevtvenvginslqGdiealdeilekmgaeitqeeda 287
                    p+i+dt+++l+++g+ki+++g+++ it++G+++l g  y+v +D++++++flvaAai+gg+++++n+++++l+    a+ ++l+++ga+i+++e +
     CTQ30177.1 189 PEIVDTANFLNALGAKITGQGSDR-ITIEGVQRLGGGVYRVLPDRIETGTFLVAAAISGGKILCRNAQPDTLD----AVLAKLRDAGADIETGE-D 278
                    *******************88887.************************************************....78889************.* PP

                    EEEEEETTS--BEEEEEBGSTTSBHGGGHHHHHHHHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEEEEEEEE.EB-EEEE-TTSTTT CS
  EPSP_synthase 288 sivvgpsglklkdvdietlpdeaptlavlaafaegttviegiaelrvketdrlaamateLrklGaeveeeedgliiipaekqlkgaevesydDhRi 383
                    +i+ +++g ++k+v+++t+p+++++++++a+f+ ++ v+eg+  +++++++++++++ eL ++Ga++e+e+++ i++++ kql+ga+v+++ D+R+
     CTQ30177.1 279 WISLDMHGNRPKAVNVRTAPHPGFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHIPELIRMGAHAEIESNTAICHGV-KQLSGAQVMAT-DLRA 372
                    *************************************************************************886665.68*********.**** PP

                    THHHHHHHHHSBSEEEEETTHHHHHHSSSHHHHH CS
  EPSP_synthase 384 amalalaglvaegeveiddiectdksfpefeekL 417
                    +++l+lag++aeg++++d+i+++d++++++e+kL
     CTQ30177.1 373 SASLVLAGCIAEGTTIVDRIYHIDRGYERIEDKL 406
                    ********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 3542.77
//
Query:       CTQ30178.1  [L=108]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 953.62
//
Query:       CTQ30179.1  [L=84]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-14   53.9   0.0    1.8e-14   53.7   0.0    1.1  1  BolA      BolA-like protein
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.22   11.5   0.0    1.2  1  DUF3206   Protein of unknown function (DUF3206)
       0.15   11.9   0.0       0.24   11.3   0.0    1.3  1  GP70      Gene product 70


Domain annotation for each model (and alignments):
>> BolA  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0     3e-18   1.8e-14      20      76 .]      18      74 ..       3      74 .. 0.90

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 3e-18
        BolA 20 aghaeaggetHFkvvivseaFegkslvarhRlvyalLkeel.akgiHALslktktpee 76
                ++h  +g ++HF+v  v e F+g+s+v++++ vya L e + +++iHALs+k+ tp+e
  CTQ30179.1 18 EVH-VSGDGSHFQVIAVGEMFDGMSRVKKQQSVYAPLMEYIaDNRIHALSIKAFTPQE 74
                566.6799*********************************6667***********98 PP

>> DUF3206  Protein of unknown function (DUF3206)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.6e-05      0.22      14      47 ..       4      37 ..       2      48 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.6e-05
                HHHHHHHHHHHHHHHHHHH---TT--HHHHHHHH CS
     DUF3206 14 eitdrflsntlafsvGlvtedistfdpivlkime 47
                +++++ l+n l +   +v++d s+f+ i + +m 
  CTQ30179.1  4 HEIQTVLMNALPLQEVHVSGDGSHFQVIAVGEMF 37
                578899********************99998885 PP

>> GP70  Gene product 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     4e-05      0.24       9      29 ..      42      62 ..      41      68 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4e-05
        GP70  9 vVkdthelYrPVadlisknea 29
                +Vk ++ +Y+P  ++i  n +
  CTQ30179.1 42 RVKKQQSVYAPLMEYIADNRI 62
                7***************76665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       287  (0.0160076); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 747.40
//
Query:       CTQ30180.1  [L=96]
Description: hypothetical protein CH1034_300288 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-15   56.7   2.2    2.7e-15   56.5   2.2    1.1  1  STAS_2    STAS domain
      8e-05   22.3   0.0      8e-05   22.3   0.0    1.1  1  STAS      STAS domain


Domain annotation for each model (and alignments):
>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   2.2     3e-19   2.7e-15       1      79 [.      14      90 ..      14      91 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 3e-19
      STAS_2  1 LsLsGeldldtaaelreqllealaagaevvvDlsgvervDsaalalLlalartarargrrlvlrglppalrrlldlyGl 79
                L+L+Geld d + +l+e+ ++a +ag +  +Dls+ +rvD+a+lalL+++++  r++gr  +l+g ++ l++l  ly+l
  CTQ30180.1 14 LALHGELDQDLLVPLWEARAQA-TAG-TAIIDLSQTTRVDTAGLALLVHFVALIRRQGREAQLVGKSENLQTLIGLYNL 90
                78*******************9.669.9*************************************************98 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   8.9e-09     8e-05      50      97 ..      39      86 ..       8      95 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 8.9e-09
                EEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHHHH CS
        STAS 50 slildlsavsfiDssGvraLkeilkelkrigvevvlvnikpevrekle 97
                + i+dls+ + +D++G++ L+ ++  ++r+g e  lv+ ++++   + 
  CTQ30180.1 39 TAIIDLSQTTRVDTAGLALLVHFVALIRRQGREAQLVGKSENLQTLIG 86
                569***********************************9999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 732.50
//
Query:       CTQ30181.1  [L=211]
Description: toluene transporter subunit: membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-54  182.7   0.1    5.1e-54  182.5   0.1    1.1  1  MlaC      MlaC protein


Domain annotation for each model (and alignments):
>> MlaC  MlaC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.5   0.1   2.9e-58   5.1e-54       2     165 ..      33     198 ..      32     199 .. 0.97

  Alignments for each domain:
  == domain 1  score: 182.5 bits;  conditional E-value: 2.9e-58
                 HHHHHHHHHHHHSHHHHHH-HHHHHHHHHHHTGGGB-HHHHHHHHHCCHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-SS-EEEE----S-TTTSSE CS
        MlaC   2 evvdevlsalkkdkakkkknpeelrekveellepyfdfermarlvlGkywrkatpeqrqrfveaFrellvrtYasalaeysgqkievkperpspkgkkd 100
                 e++++++++lk++++k+k+np++lr++v+++l+py++++++++lvlG+y+++atp+qr+++++aFre+l + Y +ala y+gq++++ pe+p +++ + 
  CTQ30181.1  33 EAAQKTFDRLKNEQPKIKANPNYLRDIVDQELLPYVQVKYAGALVLGRYYKEATPAQREAYFAAFREYLKQAYGQALAMYHGQTYQIAPEQPLGSA-TI 130
                 789******************************************************************************************987.9* PP

                 EEEEEEEEETTS.EEEEEEEEEEEE..TTEEEEEEEEETTEEHHHHHHHHHHHHHHHHCHHHHHHHHH CS
        MlaC 101 vvVkteiiqagg.kpikvdYrlrkk..ggewkiyDviieGvslvatyrsqfasilrqkgidglikkLe 165
                 v ++++ii+++g +p+++d+++rk+  +g+w++yD+i+eGvs+++t++++++++lr kg+dgl+++L+
  CTQ30181.1 131 VPIRVTIIDPNGrPPVRLDFQWRKNtqTGNWQAYDMIAEGVSMITTKQNEWSDLLRTKGVDGLTAQLK 198
                 ***********7699*********87899*************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       841  (0.0469072); expected 358.6 (0.02)
Passed bias filter:                      655  (0.036533); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1675.30
//
Query:       CTQ30182.1  [L=183]
Description: toluene transporter subunit: membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-22   77.9   0.0    7.3e-22   77.5   0.0    1.2  1  MlaD      MlaD protein


Domain annotation for each model (and alignments):
>> MlaD  MlaD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   4.1e-26   7.3e-22       2      80 ..      39     116 ..      38     117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.5 bits;  conditional E-value: 4.1e-26
        MlaD   2 gytvtaqfdnangLkvgapVryrGvtvGrVtsitldpdtrrvtvtvdldkksetsipedsraqvstggllgekyialdp 80 
                 +y+++a+fdn +gLk+++pVr+ Gv vGrV++itldp t++ +v++d+d +  ++ip+ s+  ++t+gllge+y+al+ 
  CTQ30182.1  39 TYRLYATFDNIGGLKARSPVRIGGVVVGRVADITLDPKTYLPRVELDID-ERYNHIPDTSSLAIRTSGLLGEQYLALNV 116
                 89***********************************************.9999**********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1564.37
//
Query:       CTQ30183.1  [L=260]
Description: toluene transporter subunit: membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-72  242.8  18.1    3.6e-72  242.5  18.1    1.1  1  MlaE          Permease MlaE


Domain annotation for each model (and alignments):
>> MlaE  Permease MlaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.5  18.1     2e-76   3.6e-72       1     212 []      44     256 ..      44     256 .. 0.99

  Alignments for each domain:
  == domain 1  score: 242.5 bits;  conditional E-value: 2e-76
        MlaE   1 lveqlefvgvkslpivlltalftGavlalqgasqlkqfgaesllgslvalalvrelgPvltallvagrvGsaiaAelGtmrvteeidAlevmgidpiky 99 
                 lv+ql++vgv s++i+++ +lf+G+vl+lqg+  l+++ ae+ lg lval+l+relgPv++all+agr+Gsa++Ae+G mr+te++  +e+m++dp+++
  CTQ30183.1  44 LVRQLYNVGVLSMLIIIVSGLFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPVVAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRR 142
                 589************************************************************************************************ PP

        MlaE 100 lvvPrvlAlvialplLtviadlvgilggylvavlllgispgaylqsvqealsl.kdllvgllKalvfGliialiacyqGltakggaegvgrattravvt 197
                 ++ Pr++A+vi+lplLt+i+++vgi+gg+lv+v++ gi+ g++++ +q+a+++  dl+++l+K+lvf++++++ia ++G+ a ++++g++rattr+vv+
  CTQ30183.1 143 VISPRFWAGVISLPLLTIIFVAVGIWGGALVGVSWKGIDGGFFWTAMQNAVDWrMDLVNCLIKSLVFAITVTWIALFNGYDAIPTSAGISRATTRTVVH 241
                 *****************************************************99******************************************** PP

        MlaE 198 sivlilvvdlvltll 212
                 +++++l +d+vlt+l
  CTQ30183.1 242 ASLAVLGLDFVLTAL 256
                 ************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2053.68
//
Query:       CTQ30184.1  [L=270]
Description: toluene tolerance efflux transporter (ABC superfamily, atp_bind) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-28   98.9   0.0    4.6e-28   98.5   0.0    1.2  1  ABC_tran     ABC transporter
      6e-08   32.9   0.2     0.0013   18.6   0.1    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00057   19.8   0.0    0.00085   19.3   0.0    1.3  1  RsgA_GTPase  RsgA GTPase
     0.0011   19.4   0.0     0.0014   19.0   0.0    1.3  1  AAA_16       AAA ATPase domain
     0.0029   17.9   0.0     0.0054   17.0   0.0    1.5  1  AAA_22       AAA domain
     0.0084   15.8   0.1      0.017   14.9   0.1    1.4  1  AAA_29       P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.015   14.9   0.6      0.071   12.7   0.6    2.3  1  AAA_25       AAA domain
      0.016   15.7   0.1      0.023   15.2   0.1    1.2  1  AAA_23       AAA domain
      0.024   14.4   0.0      0.036   13.8   0.0    1.3  1  AAA_24       AAA domain
      0.046   12.5   5.5       0.82    8.4   0.8    2.5  2  ABC_ATPase   Predicted ATPase of the ABC class
      0.068   13.4   0.3        2.2    8.5   0.2    2.4  3  AAA_28       AAA domain
      0.084   12.9   0.0       0.27   11.3   0.0    1.9  2  AAA_14       AAA domain
      0.091   12.6   0.0        0.2   11.5   0.0    1.6  1  AAA_3        ATPase family associated with various cellular a
       0.12   12.8   0.0       0.42   11.0   0.0    1.9  2  AAA          ATPase family associated with various cellular a
       0.24   11.3   0.6       0.44   10.4   0.6    1.4  1  NACHT        NACHT domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.0   3.8e-31   4.6e-28       2     136 ..      25     172 ..      24     173 .. 0.86

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 3.8e-31
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTC..... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxx..... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren........esdee..... 84 
                 +++sl++ +g+++ai+G++G GK+tLl+l+ g+  p+ Geil+dg+++ +    +l  +rk++++l+q   lf +l+v +n        +   +     
  CTQ30184.1  25 DDISLSVPRGKITAIMGPSGIGKTTLLRLIGGQIPPDRGEILFDGENVPQmtrSRLYTVRKRMSMLFQSGALFTDLNVFDNvayplrehT---Hlppal 120
                 89*******************************************99999788888999***********************98875440...255556 PP

                 .HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 .iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                   ++++ kl+ ++l+    k  ps+LSgG+ +r alara++ +p+l+++DEp+
  CTQ30184.1 121 lHTTVMMKLEAVGLRGAA-KLMPSELSGGMARRAALARAIALEPDLIMFDEPF 172
                 555555555555544333.4567*****************************6 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   6.7e-05      0.08       1      21 [.      36      56 ..      36     105 .. 0.76
   2 !   18.6   0.1   1.1e-06    0.0013     233     302 ..     141     209 ..     109     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.7e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldl 21
                ++++ Gp g GK++LL+++ +
  CTQ30184.1 36 ITAIMGPSGIGKTTLLRLIGG 56
                799***************944 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.1e-06
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHS.plll 302
                  ++elS G+ r +al+ a++  +   +l+ +DEp  g +P  +  l++l+ +++s+ g+ +i+++H+ p++l
  CTQ30184.1 141 MPSELSGGMARRAALARAIALEP---DLIMFDEPFVGQDPITMGVLVKLIsELNSTLGVTCIVVSHDvPEVL 209
                 57899*******99999999888...9***********************555555***********99987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   7.1e-07   0.00085      98     123 ..      33      58 ..       3      94 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 7.1e-07
                  TTSEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpel 123
                  ++k+++++G+SG+GK+tL+  + ++ 
   CTQ30184.1  33 RGKITAIMGPSGIGKTTLLRLIGGQI 58 
                  569****************9988775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.2e-06    0.0014      23      53 ..      33      63 ..      23     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.2e-06
      AAA_16 23 rpelvllsGesGvGKsslvrellralekdgg 53
                r+ ++ + G+sG+GK++l+r +  ++  d+g
  CTQ30184.1 33 RGKITAIMGPSGIGKTTLLRLIGGQIPPDRG 63
                558999***************9999988843 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.5e-06    0.0054       5      29 ..      34      58 ..      32     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.5e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleql 29
                 +i++++G+sG+GKTtllr +  q 
  CTQ30184.1 34 GKITAIMGPSGIGKTTLLRLIGGQI 58
                5899***************987665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.4e-05     0.017      12      39 ..      24      51 ..      22      53 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-05
      AAA_29 12 fdghtieidlkg.atlltGpsGsGKSTll 39
                fd+ ++++  +g +t ++GpsG GK+Tll
  CTQ30184.1 24 FDDISLSVP-RGkITAIMGPSGIGKTTLL 51
                666667776.455**************98 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6     6e-05     0.071      30      53 ..      31      54 ..      26     204 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6e-05
      AAA_25 30 lpagelallaGapgtGKttlaldl 53
                +p+g++++++G++g GKttl+  +
  CTQ30184.1 31 VPRGKITAIMGPSGIGKTTLLRLI 54
                69*****************98555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   1.9e-05     0.023      18      39 ..      33      54 ..      13      56 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.9e-05
      AAA_23 18 skgltlItGpNGaGKTTildAi 39
                  ++t+I Gp G GKTT+l+ i
  CTQ30184.1 33 RGKITAIMGPSGIGKTTLLRLI 54
                5589***************977 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.1e-05     0.036       4      22 ..      36      54 ..      33      71 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.1e-05
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                  +i+GpsgiGKTtl++ +
  CTQ30184.1 36 ITAIMGPSGIGKTTLLRLI 54
                579************9877 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.8   0.00068      0.82     240     264 ..      29      54 ..      27      58 .. 0.90
   2 ?    6.0   0.3    0.0037       4.5     370     411 ..     175     218 ..     139     242 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00068
                 EEE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAl 264
                 + +p+G +t+I+G+   GK+TLL+ +
  CTQ30184.1  29 LSVPRGkITAIMGPSGIGKTTLLRLI 54 
                 6799*******************865 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0037
                 G--B-..-HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEE CS
  ABC_ATPase 370 kepit..plvdrvrelykklgvstilvvggsgdyldvAdtvilm 411
                 ++pit   lv+++ el ++lgv+ i+v+  + + l++Ad    +
  CTQ30184.1 175 QDPITmgVLVKLISELNSTLGVTCIVVSHDVPEVLSIADYAYIV 218
                 667773359*****************************976554 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2    0.0019       2.2       3      18 ..      38      53 ..      36      65 .. 0.89
   2 ?    2.4   0.0      0.14   1.7e+02      56     100 ..      76     120 ..      60     135 .. 0.72
   3 ?   -3.4   0.0       8.6     1e+04     143     161 ..     189     206 ..     185     207 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0019
      AAA_28  3 vitGgestGKTtllea 18
                +i+G+++ GKTtll+ 
  CTQ30184.1 38 AIMGPSGIGKTTLLRL 53
                79***********986 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.14
      AAA_28  56 aervleeqleeeaaaaankvlfcDrglldtlaYarayggeaeael 100
                  + +l   +++     +++ lf D +++d++aY  +++   +++l
  CTQ30184.1  76 TRSRLYTVRKRMSMLFQSGALFTDLNVFDNVAYPLREHTHLPPAL 120
                 55555555555555567899*************877777666655 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 8.6
      AAA_28 143 ealrelgipviivpsgdve 161
                 e+  +lg+ +i+v s dv 
  CTQ30184.1 189 ELNSTLGVTCIVV-SHDVP 206
                 5566799999999.88775 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00023      0.27       2      25 ..      34      57 ..      33     107 .. 0.76
   2 ?   -1.8   0.0       2.6   3.1e+03      76     105 ..     205     233 ..     202     242 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00023
      AAA_14  2 rkilvitGaRrvGKTtllkqlike 25
                +ki +i+G+  +GKTtll+ +  +
  CTQ30184.1 34 GKITAIMGPSGIGKTTLLRLIGGQ 57
                6899*************9877544 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.6
      AAA_14  76 vpewekalkslvdegknldvivtGSnskll 105
                 vpe+ ++  + +    + ++++ GS+++l 
  CTQ30184.1 205 VPEVLSIADYAYIVA-DKKIVAHGSAQSLR 233
                 566666666666655.45899999998775 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00016       0.2       4      72 ..      39     107 ..      37     145 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
       AAA_3   4 legvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfe.ekekefefkkGpvfanllladein 72 
                 + g  G++kt+l + ++ ++  +   i f  + +P   + +++++ +k+ ++ f++G++f++l + d++ 
  CTQ30184.1  39 IMGPSGIGKTTLLRLIGGQIPPDRGEILFDGENVPQM-TRSRLYTvRKRMSMLFQSGALFTDLNVFDNVA 107
                 56778******************************75.5556665156689************9999986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00035      0.42       3      22 ..      39      58 ..      37     104 .. 0.70
   2 ?   -1.1   0.0         2   2.4e+03      58      66 ..     162     170 ..     126     211 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00035
                EESSTTSSHHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakel 22
                ++Gp G+GKT+l + +  ++
  CTQ30184.1 39 IMGPSGIGKTTLLRLIGGQI 58
                68*************99886 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2
                 TSEEEEEET CS
         AAA  58 kpsilfiDE 66 
                 +p  +++DE
  CTQ30184.1 162 EPDLIMFDE 170
                 466666666 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6   0.00037      0.44       3      20 ..      37      54 ..      35      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00037
                EEEEC-TTTCHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkl 20
                 ++ G++G+GKTtLl+ +
  CTQ30184.1 37 TAIMGPSGIGKTTLLRLI 54
                6899***********865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2009.70
//
Query:       CTQ30185.1  [L=325]
Description: putative calcium/sodium:proton antiporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-55  185.7  32.9    2.6e-28   98.9  13.7    2.0  2  Na_Ca_ex        Sodium/calcium exchanger protein
  ------ inclusion threshold ------
       0.13   11.0   0.0       0.22   10.3   0.0    1.3  1  Glyco_transf_6  Glycosyltransferase family 6
       0.41    9.9  28.0        1.9    7.7  28.0    2.0  1  DUF4401         Domain of unknown function (DUF4401)
       0.68   10.4   0.0       0.68   10.4   0.0    2.8  4  SIT             SHP2-interacting transmembrane adaptor protei


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9  13.7   5.7e-32   2.6e-28       2     150 ..       4     144 ..       3     145 .. 0.95
   2 !   93.1  11.1   3.5e-30   1.6e-26       3     150 ..     176     317 ..     174     318 .. 0.93

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 5.7e-32
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECC CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslk 100
                 +++l+i++lll++ +ad+lv +a+ + + lgi++ ++G+t++++g+slpE++++++a l+g++dla+g++lGsni n+ll++Gl+al+ +++v+s  l 
  CTQ30185.1   4 ATALLIIGLLLVVYSADRLVYAASILCRMLGIPPLIIGMTVVSIGTSLPEIMVATAASLHGQTDLAVGTALGSNITNILLILGLAALLRPFTVHSDILR 102
                 5789*********************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 101 ldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvlsl 150
                 ++l+l+llv++l+    l+l+     +g+lt+l+gl ll+l +l l++ +
  CTQ30185.1 103 RELPLMLLVSVLA---GLVLY-----DGQLTRLDGLFLLALALLWLLFTI 144
                 *****99999988...55666.....5**************999999987 PP

  == domain 2  score: 93.1 bits;  conditional E-value: 3.5e-30
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkl 101
                 ++++ ++++++ +++ ++v++ +++a+++ is+ ++Glt++A+g+slpEl+++i+ a++ge d+aign++G+ni+n+ lv+Gl+ali++ +   e +++
  CTQ30185.1 176 LLWLGVAMIVMPMATRMVVDNSTVLANYFAISELTVGLTVVAIGTSLPELATAIAGARKGEDDIAIGNIIGANILNIALVLGLPALIAPGSFATEAFTR 274
                 67889999*********************************************************************************9999999*** PP

                 HHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 102 dlgllllvallllllvlllllplfvpgrltvleglvllllYalylvlsl 150
                 d g++llv+l++  +vl++      + +  +l+g++l++ +++ l++++
  CTQ30185.1 275 DYGVMLLVSLIF--AVLCWR-R---QQQPGRLVGALLVGGFVVWLAMLF 317
                 ****99999999..567655.3...49****************999876 PP

>> Glyco_transf_6  Glycosyltransferase family 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   4.8e-05      0.22      70      95 ..     196     221 ..     178     234 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.8e-05
                     -HHHHHHHHHHTT-EEEEEEEE-GGG CS
  Glyco_transf_6  70 dkelleeqyakqnltvGltvfavkky 95 
                     ++ +l +++a  +ltvGltv a++  
      CTQ30185.1 196 NSTVLANYFAISELTVGLTVVAIGTS 221
                     6789*******************975 PP

>> DUF4401  Domain of unknown function (DUF4401)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  28.0   0.00042       1.9      14     245 ..       3     321 ..       1     324 [. 0.69

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00042
     DUF4401  14 Laalfllgflalllssllrse......igalvvGllllaaAvallrqkkeglfldqlalalslaGqalllfglaesldsssasllllallslalavlfp 106
                 La+ +l++ l+l++ s+          i + ++G+  l++ +++    + +l    +a+a+sl Gq  l++g a   ++++  l+l ++  l  ++++ 
  CTQ30185.1   3 LATALLIIGLLLVVYSAD--RlvyaasILCRMLGIPPLIIGMTVVS-IGTSLPEIMVATAASLHGQTDLAVGTALGSNITNILLILGLAALLRPFTVHS 98 
                 666666666666633333..23466667777888888888888887.7777888889*********************998645555555555678888 PP

     DUF4401 107 dallrfLsvlaaallallglllsgllplaialvllllallflvlllneal.................klkargraalleplayglllsl.....llagl 183
                 d l r L +++++ ++++ +l++g l    +l+ll+lall+l+++++ a+                   ++   + +l  l+ +++++      +    
  CTQ30185.1  99 DILRRELPLMLLVSVLAGLVLYDGQLTRLDGLFLLALALLWLLFTIKIARlaerqgsdsltreqlaeLPREGSLPVALLWLGVAMIVMPmatrmV---- 193
                 88888899999966666666777777777777777777777777766666999999888888753332222222333333333443333333331.... PP

     DUF4401 184 vllan.........................................................................dtltallkaasalllagvlll 209
                                                                                               +t +      ++ll+++++++
  CTQ30185.1 194 ----VdnstvlanyfaiseltvgltvvaigtslpelataiagarkgeddiaigniiganilnialvlglpaliapgsfATEAFTRDYGVMLLVSLIFAV 288
                 ....03456777788888888888888889999999999999999999999999999999999999999999988886444555555566666777777 PP

     DUF4401 210 llWrvlisrrlklpklllaavllalll..lallslfaP 245
                 l W     rr ++p++l++a+l++  +  la+l++ aP
  CTQ30185.1 289 LCW-----RRQQQPGRLVGALLVGGFVvwLAMLFWTAP 321
                 777.....777777777777666533336999999998 PP

>> SIT  SHP2-interacting transmembrane adaptor protein, SIT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.4       2.3     1e+04       4      13 ..       7      16 ..       4      24 .. 0.76
   2 ?   -2.3   0.2       1.3   5.9e+03       9      22 ..     107     120 ..     105     123 .. 0.83
   3 ?   -1.4   0.0       0.7   3.1e+03       6      29 ..     132     154 ..     129     170 .. 0.58
   4 ?   10.4   0.0   0.00015      0.68       8      29 ..     277     298 ..     276     303 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.3
         SIT  4 llilallLll 13
                lli++llL++
  CTQ30185.1  7 LLIIGLLLVV 16
                6788888876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.3
         SIT   9 llLlllviasllaw 22 
                 l Ll++v a l+ +
  CTQ30185.1 107 LMLLVSVLAGLVLY 120
                 78999999999876 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.7
         SIT   6 ilallLlllviasllawrmkkrqk 29 
                 +lal+Ll  + + +   r  +rq 
  CTQ30185.1 132 LLALALLW-LLFTIKIARLAERQG 154
                 55666655.445555555555554 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00015
         SIT   8 allLlllviasllawrmkkrqk 29 
                 ++ Ll+++i+ +l+wr++++  
  CTQ30185.1 277 GVMLLVSLIFAVLCWRRQQQPG 298
                 799**************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2330.68
//
Query:       CTQ30186.1  [L=334]
Description: D-arabinose 5-phosphate isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-34  118.8   0.1    1.8e-33  115.2   0.0    2.2  2  SIS       SIS domain
    1.6e-14   54.1   2.2    2.4e-06   27.9   0.3    3.3  3  CBS       CBS domain
    8.6e-05   22.6   1.6     0.0027   17.7   0.0    2.3  2  SIS_2     SIS domain
     0.0045   16.6   0.0     0.0069   16.0   0.0    1.3  1  DUF2529   Domain of unknown function (DUF2529)


Domain annotation for each model (and alignments):
>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.0     4e-37   1.8e-33       2     131 .]      52     183 ..      51     183 .. 0.96
   2 ?    0.8   0.0     0.088     4e+02      68      99 ..     230     261 ..     223     270 .. 0.80

  Alignments for each domain:
  == domain 1  score: 115.2 bits;  conditional E-value: 4e-37
                 HCTSSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEEEEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSE CS
         SIS   2 LakakriyvlGaGtsyaiakelalkleeiggivvevedaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadl 100
                 +++  +++v+G+G+s++i++++a++++++g+ +++v++ ++ + + l++++++d+vi++s sge+++ +a+++++k++++k+i+IT+ ++s++ar ad+
  CTQ30186.1  52 FRCGGKVVVMGMGKSGHIGRKMAATFASTGTSAFFVHPGEAAHGD-LGMVTPQDVVIALSNSGESNEILALIPVLKRQQVKLICITSRPESSMARAADI 149
                 566679***********************************7777.***************************************************** PP

                 EEEEEEECHC...SSSHCHHHHHHHHHHHHHHHH CS
         SIS 101 alyinaepet...lvastksltaqlaaldalava 131
                 +l++ +++e+   ++a+t+s+ta l+++dalava
  CTQ30186.1 150 HLCVKVPKEAcplGLAPTSSTTAALVMGDALAVA 183
                 *******************************985 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.088
                 HHHHHHHHHHHTTSEEEEEESSTTSHHHHHSS CS
         SIS  68 dlvaaaelakergakiiaITdskgsplaread 99 
                  l +a+ + ++++  + aI+d +++++  ++d
  CTQ30186.1 230 TLRDALLEITRKNLGMTAICDDDMNIIGIFTD 261
                 4556666999999999*****99999876665 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.22   9.8e+02      43      56 ..      97     110 ..      72     111 .. 0.81
   2 !   23.0   0.2   1.8e-08   8.2e-05       1      54 [.     212     267 ..     212     269 .. 0.91
   3 !   27.9   0.3   5.2e-10   2.4e-06       2      54 ..     280     331 ..     279     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.22
                 EEEEEHHHHHHHHH CS
         CBS  43 vGivtlrDllrall 56 
                 +G+vt  D++ al+
  CTQ30186.1  97 LGMVTPQDVVIALS 110
                 79******998875 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 1.8e-08
                 HHHHSBS..SCEEEETTSBHHHHHHHHHHHTSSEE.EEEETTTBEEEEEEHHHHHHH CS
         CBS   1 Vgdimtr..dvvtvppdttleealelmrekgvsrl.PVVdedgklvGivtlrDllra 54 
                 V dim++  +++ v  ++tl++al ++++k++ ++  + d+d +++Gi+t+ Dl r+
  CTQ30186.1 212 VNDIMHTgdEIPHVGLQATLRDALLEITRKNL-GMtAICDDDMNIIGIFTDGDLRRV 267
                 678999998999***************9***9.6659***999***********997 PP

  == domain 3  score: 27.9 bits;  conditional E-value: 5.2e-10
                 HHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHH CS
         CBS   2 gdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllra 54 
                 +d+mtr  + ++p t   +al+lm ++++++++V d+d+ l+G+v+++Dllra
  CTQ30186.1 280 ADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGDH-LLGVVHMHDLLRA 331
                 799***999***************665588886667777.***********97 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.5     0.011        50      31      60 ..      51      80 ..      27     101 .. 0.74
   2 !   17.7   0.0     6e-07    0.0027     101     138 .]     100     137 ..      96     137 .. 0.95

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.011
                HHHTT--EEEEESGGGHHHHHHTSSSTT-B CS
       SIS_2 31 slenggkvlvfGsGhSaalaeelaaraggl 60
                  + ggkv+v+G G S  +  ++aa + + 
  CTQ30186.1 51 IFRCGGKVVVMGMGKSGHIGRKMAATFAST 80
                34569***********99999999988765 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 6e-07
                 --TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2 101 lkpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                 + p+Dv + +SnsG+++ +++++   k++++k+i +ts
  CTQ30186.1 100 VTPQDVVIALSNSGESNEILALIPVLKRQQVKLICITS 137
                 579**********************************8 PP

>> DUF2529  Domain of unknown function (DUF2529)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.5e-06    0.0069      74     134 ..      99     157 ..      55     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.5e-06
                 ---TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEESS---T..TGGGSSS-EE----S CS
     DUF2529  74 eltetDrvllfsresndkealklakkleekgievvavsskvkeedalteladvfidlklkk 134
                  +t++D v+ +s++ +++e+l+l+  l+ +++++++++s+++++  ++  ad+++ +k++k
  CTQ30186.1  99 MVTPQDVVIALSNSGESNEILALIPVLKRQQVKLICITSRPESS--MARAADIHLCVKVPK 157
                 799**************************************999..689999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2612.13
//
Query:       CTQ30187.1  [L=188]
Description: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-11   44.8   0.0    2.4e-09   37.3   0.0    2.1  2  Hydrolase_3  haloacid dehalogenase-like hydrolase
    0.00035   20.9   0.0     0.0043   17.4   0.0    2.1  2  Hydrolase    haloacid dehalogenase-like hydrolase
    0.00048   20.3   0.1      0.011   15.9   0.0    2.5  2  HAD_2        Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.091   12.3   0.0       0.41   10.1   0.0    1.8  2  S6PP         Sucrose-6F-phosphate phosphohydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0011       4.8      24      55 ..      62      93 ..      29      98 .. 0.77
   2 !   37.3   0.0   5.3e-13   2.4e-09     181     248 ..      95     162 ..      91     169 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0011
                 HHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3 24 ikklkekgikvviATGRslravlpvleelgld 55
                 i+ +   gi+v+i TGR+ + v++  + lg++
   CTQ30187.1 62 IRCALTSGIEVAIITGRKAKLVEDRCQTLGIT 93
                 5666779*****************99999987 PP

  == domain 2  score: 37.3 bits;  conditional E-value: 5.3e-13
                  EEETT-SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGG CS
  Hydrolase_3 181 impkgvsKgtalkklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnne 248
                  +++ + +K  a ++l  +l + +eev+ +GD+  D + +  +gl+vA+++a++ +   A+yvt  n  
   CTQ30187.1  95 LYQGQSDKLLAFRDLTDKLHVRPEEVAYIGDDLIDWPVMAEVGLSVAVADAHPLLLPRANYVTRINGG 162
                  6778899********************************************************98865 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.071   3.2e+02       1      15 [.      26      40 ..      26      55 .. 0.88
   2 !   17.4   0.0   9.7e-07    0.0043     133     210 .]      68     137 ..      62     137 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.071
                SSEEEEESBTTTBCH CS
                xxxxxxxxxxxxxxx RF
   Hydrolase  1 iktvvfDkdGTLttg 15
                i+++++D+dG+L +g
  CTQ30187.1 26 IRLLILDVDGVLSDG 40
                7899********887 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 9.7e-07
                 TTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCES..STTT.SHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 133 agievvlltgdnpetaeraanqlGddyfdaviasdiet..vakp.spegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                  giev+++tg   + +e   + lG           i+    +   +  +++ + ++L ++peeva +GD + D + +a++g
  CTQ30187.1  68 SGIEVAIITGRKAKLVEDRCQTLG-----------ITHlyQGQSdKLLAFRDLTDKLHVRPEEVAYIGDDLIDWPVMAEVG 137
                 59***************99999**...........6664433332345677777777799***************999987 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.48   2.2e+03       1      11 [.      29      39 ..      29      53 .. 0.85
   2 !   15.9   0.0   2.4e-06     0.011      94     176 ..      68     141 ..      62     143 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.48
       HAD_2  1 iiFDlDgTlld 11
                +i D+Dg+l d
  CTQ30187.1 29 LILDVDGVLSD 39
                589*****988 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2.4e-06
       HAD_2  94 agyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                  g++++i+T ++++ ve+  + lgi+++++   +++d          ++ + +kl++ +eev y+GD   D     ++g+ v+
  CTQ30187.1  68 SGIEVAIITGRKAKLVEDRCQTLGITHLYQ---GQSDK------LLAFRDLTDKLHVRPEEVAYIGDDLIDWPVMAEVGLSVA 141
                 689999999999999999999999887775...33443......3458889*******************9998888888776 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.13   5.9e+02      31      54 ..      65      88 ..      26      94 .. 0.58
   2 ?   10.1   0.0   9.2e-05      0.41     163     214 ..      99     150 ..      97     160 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.13
                GGGGGEEEEEE-SS-HHHHHHHHH CS
        S6PP 31 eerkdvllvfaTGRsldsakellk 54
                +  + + + ++TGR+ + +++  +
  CTQ30187.1 65 ALTSGIEVAIITGRKAKLVEDRCQ 88
                445667889999999988877655 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 9.2e-05
                 T-SHHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEEE-TT--HHHH CS
        S6PP 163 raskgeAlryLakkleleleqilvcGdsgnDeellignvlgVvVgnaqeell 214
                 +++k  A r L +kl++ +e++   Gd   D  ++ +  l+V V++a++ ll
  CTQ30187.1  99 QSDKLLAFRDLTDKLHVRPEEVAYIGDDLIDWPVMAEVGLSVAVADAHPLLL 150
                 578999******************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       241  (0.0134419); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1465.39
//
Query:       CTQ30188.1  [L=191]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-56  188.8   0.6    6.6e-56  188.6   0.6    1.0  1  LptC      Lipopolysaccharide-assembly, LptC-related


Domain annotation for each model (and alignments):
>> LptC  Lipopolysaccharide-assembly, LptC-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.6   0.6   3.7e-60   6.6e-56       3     176 .]      10     183 ..       8     183 .. 0.94

  Alignments for each domain:
  == domain 1  score: 188.6 bits;  conditional E-value: 3.7e-60
                 XXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXX-EEEEEEEEEEETTTTEEEEESEEEEEE-TTS.EEEEEE-SEEEE-T.TS CS
        LptC   3 ialvlaawfyslnqedspksekqlkkkksepdyvaenfettqydedGklqyrltadklehypdddqteftnPvliiydegt.qswkvtAkkAkltkkgq 100
                 i+l l+a++++ ++ +++++ +q + ++++p+y+ e+++t++y+++G l+yrl+a+++e+++d++ ++ft+Pv++++d+++ ++w v+A+kAklt+ ++
  CTQ30188.1  10 ILLSLLALILIGLNLANTDDTAQPEVNPNDPTYKSEHTDTVVYSPEGALSYRLIAEHVEYFSDQEVSWFTKPVMTTFDTNKvPTWSVRADKAKLTN-DR 107
                 566666666555555555558899************************************************************************.** PP

                 EEEEEEEEEEEE-SSS-SEEEEEEEEEEEETTT-EEEEEEEEEEEESS-EEEEEEEEEETTTTEEEEEEEEEETT- CS
        LptC 101 eleLegnVviqsltkksrlqtitTeeltvnlktkdittdqpVkitgpnfsttGvgmkanlktkkieLlskVrgrye 176
                 +l+L+g+V+++ l+++s+l +itT+++++nl t+d+t+d+ V+++g+ f+++G++m++nl+ k++eL++kVr++ye
  CTQ30188.1 108 MLYLYGHVEVNALAPDSQLRKITTDNAQINLVTQDVTSDDMVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYE 183
                 ***************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1437.74
//
Query:       CTQ30189.1  [L=181]
Description: putative lipopolysaccharide transport protein A: periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-33  113.3   2.2    8.3e-33  113.0   2.2    1.1  1  OstA      OstA-like protein
      6e-06   26.0   0.3      0.023   14.3   0.1    2.2  2  LptC      Lipopolysaccharide-assembly, LptC-related
  ------ inclusion threshold ------
      0.048   14.4   1.0      0.099   13.4   0.6    1.7  1  Big_9     Bacterial Ig domain


Domain annotation for each model (and alignments):
>> OstA  OstA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   2.2   1.4e-36   8.3e-33       1     113 []      37     149 ..      37     149 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 1.4e-36
        OstA   1 eIeAdkaelddkkkvavftGnVvvtqGnltlkAdkvtvtqdkkskkierleakg.tatfrqkvdlvgeqirGkAerieydskkeiivLtgnatltqnsn 98 
                 +Ie+d+++ld++ +v++ftGnVvvtqG+++++Adkv+vt++ ++k+ e +e  g +atf q+ d +g++++G A +++y+ +++++vLtgna l+q ++
  CTQ30189.1  37 HIESDQQSLDMQGNVVTFTGNVVVTQGTIKINADKVVVTRPGNEKGKEVIEGFGnPATFYQMQD-NGKPVKGRASKMRYELQNDYVVLTGNAYLEQLDS 134
                 7************************************************************999.********************************** PP

        OstA  99 sveGseitydikeek 113
                 +++G++ity +ke+k
  CTQ30189.1 135 NIKGDKITYLVKEQK 149
                 ***********9985 PP

>> LptC  Lipopolysaccharide-assembly, LptC-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   3.9e-06     0.023      81     118 ..      31      68 ..      22      76 .. 0.81
   2 !    9.8   0.0   9.1e-05      0.54      75     137 ..      94     151 ..      87     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.9e-06
                 TTSEEEEEE-SEEEE-T.TSEEEEEEEEEEEE-SSS-S CS
        LptC  81 egtqswkvtAkkAkltkkgqeleLegnVviqsltkksr 118
                 ++ q++++++++  l+ +g+ ++++gnVv+++ t k +
  CTQ30189.1  31 DTDQPIHIESDQQSLDMQGNVVTFTGNVVVTQGTIKIN 68 
                 344****************************9876655 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 9.1e-05
                 EEEEE-TTSEEEEEE-SEEEE-T.TSEEEEEEEEEEEE-SSS-SEEEEEEEEEEEETTT-EEE CS
        LptC  75 vliiydegtqswkvtAkkAkltkkgqeleLegnVviqsltkksrlqtitTeeltvnlktkdit 137
                 ++++ +++++++k +A k +++ +++ + L+gn  +++l        i+ +++t+ +k++ ++
  CTQ30189.1  94 TFYQMQDNGKPVKGRASKMRYELQNDYVVLTGNAYLEQL-----DSNIKGDKITYLVKEQKMQ 151
                 456677777******************************.....4558888888888888776 PP

>> Big_9  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.6   1.7e-05     0.099      23      79 ..      29      84 ..      17     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.7e-05
       Big_9 23 tvtedsvlandtdpdgdaltvtsltvtlvtapanGtvtinadgtltytpnagfsgtd 79
                t ++d+++   +d    +++++ +t+t++   ++Gt+ inad +++ t + ++ g +
  CTQ30189.1 29 TGDTDQPIHIESDQQSLDMQGNVVTFTGNVVVTQGTIKINAD-KVVVTRPGNEKGKE 84
                557899999999999999999*********************.77777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1447.15
//
Query:       CTQ30190.1  [L=241]
Description: putative lipopolysaccharide transport protein B (ABC superfamily, atp_bind) (LptB) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-34  117.4   0.0      1e-33  116.7   0.0    1.3  1  ABC_tran      ABC transporter
    5.4e-08   32.6   0.0    1.1e-07   31.6   0.0    1.5  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
    0.00045   20.1   2.1       0.16   11.8   0.1    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
       0.01   15.3   0.1        3.5    7.0   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.021   13.9   0.0      0.031   13.3   0.0    1.2  1  T2SSE         Type II/IV secretion system protein
      0.052   14.1   0.2        0.1   13.1   0.0    1.5  2  AAA_23        AAA domain
      0.095   13.0   0.2       0.88    9.8   0.2    2.2  1  SbcCD_C       Putative exonuclease SbcCD, C subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.0   4.1e-37     1e-33       2     137 .]      20     166 ..      19     166 .. 0.96

  Alignments for each domain:
  == domain 1  score: 116.7 bits;  conditional E-value: 4.1e-37
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren..............esdeei 85 
                 ++vsl+++ ge+v+++G+nGaGK+t + ++ g +  ++G+i +d++d++    + ++r+ ig+lpqe+++f++l+v++n              ++++++
  CTQ30190.1  20 EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLlPLHARARRGIGYLPQEASIFRRLSVYDNlmavlqirddltseQREDRA 118
                 79***********************************************97778899*********************************99888889* PP

                 HHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++++++ +++l+d+      + LSgG+++rv++aral+ +pk++llDEp+a
  CTQ30190.1 119 KELMEEFHIEHLRDSLG----QALSGGERRRVEIARALAANPKFILLDEPFA 166
                 ***********988887....*****************************85 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   4.2e-11   1.1e-07       2      23 .]     215     236 ..     214     236 .. 0.97

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 4.2e-11
  BCA_ABC_TP_C   2 vIAeGtPaEvrndPrVieAYLG 23 
                   +IA+GtP+++  d++V ++YLG
    CTQ30190.1 215 LIAHGTPQQILEDEQVKRVYLG 236
                   7********************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   6.1e-05      0.16       2      45 ..      32      63 ..      31      91 .. 0.72
   2 !    8.3   0.3   0.00072       1.9     235     295 ..     136     193 ..      88     199 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.1e-05
      AAA_21  2 nvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirki 45
                 +l GpNg+GK++ ++   ++            ++++ g+i+++
  CTQ30190.1 32 VGLLGPNGAGKTTTFYMVVGI------------VPRDAGNIIID 63
                689**********99877655............55555555555 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00072
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvilt 295
                   lS G +r   ++ al++ +   +++l+DEp +g +P  +  + ++++ l++ g  v++t
  CTQ30190.1 136 QALSGGERRRVEIARALAANP---KFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193
                 345888888877777888777...9*************44444446666666655555555 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0013       3.5      11      40 ..      11      45 ..       2      51 .. 0.68
   2 !    6.4   0.0     0.002       5.2     124     209 ..     119     208 ..      84     215 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0013
                TTEECEEEEEETTSSEEE.....EEESTTSSHHHH CS
                xxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxx RF
       SMC_N 11 ksyagktvilpfsksfta.....ivGpNGSGKsnl 40
                k y+g++v+ ++s  +++     ++GpNG+GK+  
  CTQ30190.1 11 KAYKGRRVVEDVSLTVNSgeivgLLGPNGAGKTTT 45
                67777777777665544333222899******975 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.002
                 HHHHHCTT-STT......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SS.HHHCCC-SCEE CS
                 xxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx.xxxxxxxxxxx RF
       SMC_N 124 sellesagiske......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislr.eemlekadklv 209
                 +el+e+ +i+        +LSgGe+  v +a  +A +      + llDe  a  D   v  + +++++ +++   ++++ ++ +e+l+ +++ +
  CTQ30190.1 119 KELMEEFHIEHLrdslgqALSGGERRRVEIARALAANP----KFILLDEPFAGVDPISVIDIKRIIEHLRDSgLGVLITDHNvRETLAVCERAY 208
                 3333333333324445559**********999988643....4999**********99999999999888765666766665234555555555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.031     127     162 ..      27      62 ..       2      75 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
       T2SSE 127 rerglilvsGgTgsGKttllyallkeinksderivt 162
                 ++  ++ + G+ g GKtt+ y+++ +++ +  +i++
  CTQ30190.1  27 NSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII 62 
                 555566678*********************888875 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     4e-05       0.1      19      36 ..      29      46 ..       7      49 .. 0.79
   2 ?   -2.8   0.0       2.9   7.5e+03     174     176 ..     112     116 ..      84     139 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4e-05
      AAA_23 19 kgltlItGpNGaGKTTil 36
                  ++ + GpNGaGKTT +
  CTQ30190.1 29 GEIVGLLGPNGAGKTTTF 46
                4688899*********76 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.9
      AAA_23 174 kl..e 176
                 ++   
  CTQ30190.1 112 EQreD 116
                 21111 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00035      0.88      62      80 ..     154     172 ..     102     182 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00035
     SbcCD_C  62 palrlvfLDEAFsklDees 80 
                  ++++++LDE F+++D+ s
  CTQ30190.1 154 ANPKFILLDEPFAGVDPIS 172
                 4589************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1891.78
//
Query:       CTQ30191.1  [L=477]
Description: RNA polymerase, sigma 54 (sigma N) factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-71  237.8   0.3    8.1e-71  236.9   0.3    1.5  1  Sigma54_DBD  Sigma-54, DNA binding domain
    6.6e-62  208.5   0.4    6.6e-62  208.5   0.4    1.9  2  Sigma54_CBD  Sigma-54 factor, core binding domain
      4e-16   58.6  20.9    1.3e-15   57.0  20.9    2.0  1  Sigma54_AID  Sigma-54 factor, Activator interacting domain (A


Domain annotation for each model (and alignments):
>> Sigma54_DBD  Sigma-54, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.9   0.3   1.4e-74   8.1e-71       2     160 .]     317     475 ..     316     475 .. 0.99

  Alignments for each domain:
  == domain 1  score: 236.9 bits;  conditional E-value: 1.4e-74
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXSSXXXXXXXHHHHHTTSSSXHHHHHHHHHHXEEEXSSXEEECSCCXXXCSSTSSBHH CS
  Sigma54_DBD   2 eylkeklqeakwliksleqRketllkvaeeiverQkdflekgeealrpltlrevaealelhesTvSRvvsnkyiktprGvfelkafFsssvsseegge 99 
                  ++++++lqea+wliksle+R++tll+v+++ive+Q++f+e+gee ++p++l ++a+a+e+hesT+SRv+++ky+++prG+felk+fFss+v++e+gge
   CTQ30191.1 317 QFIRSNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGE 414
                  6899********************************************************************************************** PP

                  THHHHCCTHHHHHHCTS-TTSS--CCHHHHHHHCTTS--HHHHHHHHHHHCT-STTCCCHS CS
  Sigma54_DBD 100 asaeaikalikklieaEdkkkplSDdkivellkekgieiaRRtvaKYRealnipssserrr 160
                  as++ai+al+kkli+aE+++kplSD+k++++l+e+gi +aRRtvaKYRe+l+ip+s++r++
   CTQ30191.1 415 ASSTAIRALVKKLIAAENPAKPLSDSKLTSMLSEQGIMVARRTVAKYRESLSIPPSNQRKQ 475
                  ***********************************************************95 PP

>> Sigma54_CBD  Sigma-54 factor, core binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.9      0.71   4.2e+03      20      26 ..      23      29 ..       3      73 .. 0.51
   2 !  208.5   0.4   1.1e-65   6.6e-62       6     179 .]     114     303 ..     111     303 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.71
  Sigma54_CBD 20 lallels 26
                 ++ll+ls
   CTQ30191.1 23 IRLLQLS 29
                 2222222 PP

  == domain 2  score: 208.5 bits;  conditional E-value: 1.1e-65
  Sigma54_CBD   6 aaaeeslqehLleQlallelseeereiaeylienLdedGYleesleeiaeel.....eeeeveavlkliqsldPaGvgArdlqEcLllQlk....... 91 
                   +++++lq++L++Q++l+++++++r+ia+ +++++d+ GYl+ ++e+i++++       eeveavlk+iq++dP+Gv+A+dl++cLl+Ql+       
   CTQ30191.1 114 GETTQTLQDYLMWQVELTPFTDTDRAIATSIVDAVDDTGYLTIQIEDIVDSIgddeiGLEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSqfaketp 211
                  57889************************************************9999999******************************44566778 PP

  Sigma54_CBD  92 ....aealieehlellakkdlkklakklglseeelqealelIkkLnPkPgrefsseeaeyivPDvivekeegelevelndealpkLrineeY 179
                      a+ +i++hl+lla++d++ l++ ++l+ee l+ea++lI++L+P+Pg++++++e+ey++PDv+v+k+ g+++veln +++p+L+in++Y
   CTQ30191.1 212 wleeARLIISDHLDLLANHDFRTLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKVSGRWTVELNADSIPRLKINQQY 303
                  8888999**********************************************99999*********************************9 PP

>> Sigma54_AID  Sigma-54 factor, Activator interacting domain (AID)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0  20.9   2.1e-19   1.3e-15       2      45 ..       5      48 ..       4      49 .. 0.98

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 2.1e-19
  Sigma54_AID  2 lqlkqtQklkLtpqLqQaiklLqlstlELeeeieeeleeNPlLE 45
                 lql+++Q+l++tpqLqQai+lLqlstlEL++e++++le+NPlLE
   CTQ30191.1  5 LQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLE 48
                 9******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3597.90
//
Query:       CTQ30192.1  [L=95]
Description: ribosome-associated, sigma 54 modulation protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-26   91.6   0.4    4.4e-26   91.5   0.4    1.0  1  Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosoma
  ------ inclusion threshold ------
      0.083   12.6   0.0       0.13   12.0   0.0    1.2  1  P2_N             Viral coat protein P2 N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S30AE  Sigma 54 modulation protein / S30EA ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.4   4.9e-30   4.4e-26       1      86 []       3      93 ..       3      93 .. 0.92

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 4.9e-30
                     EEEEECTS---HHHHHHHHHHHCCGGGG....-EEEEEEE.EE..EEEEEEEEECTTEEEEEEEEESSHHHHHHHHHHHHHHHHHHCHHTTX CS
  Ribosomal_S30AE  1 ieitgrnievtdalkeyvekkleklekyf...ieadVtls.kk..kkvevtirlakgkviraeeesedlyaaidlavdklerqlrkykeklk 86
                     ++itg+n+e+t+a++e+v+ k++kle++f    ++ ++l+ +k  + +++++ +++g  i+a++e +d+yaa+d ++dkl rql k+k+klk
       CTQ30192.1  3 LNITGHNVEITPAMREFVTAKFSKLEQFFdriNQVYIVLKvEKvtQIADANL-HVNGGEIHASAEGQDMYAAVDGLIDKLARQLTKHKDKLK 93
                     59**************************8888999999998456788*****.567*****99999************************96 PP

>> P2_N  Viral coat protein P2 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.4e-05      0.13      27      62 ..      35      71 ..      32      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
        P2_N 27 ekIvLelggtakaqItrirvklNgkeiiq.vsgadld 62
                ++++++l+  +++qI + ++ +Ng ei+  ++g+d+ 
  CTQ30192.1 35 NQVYIVLKVEKVTQIADANLHVNGGEIHAsAEGQDMY 71
                678888888999***************9999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 793.58
//
Query:       CTQ30193.1  [L=162]
Description: sugar-specific enzyme IIA component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-37  127.8   0.1    3.2e-37  127.6   0.1    1.0  1  PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransf


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.6   0.1   1.8e-41   3.2e-37       2     143 ..      13     155 ..      12     156 .. 0.95

  Alignments for each domain:
  == domain 1  score: 127.6 bits;  conditional E-value: 1.8e-41
                 HHHCCGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTETCEE----SCCC.BSS-EEEEEEEEEEEE-T-GCC-CEEEEEEE CS
  PTS_EIIA_2   2 lltkelifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgigngvAiPHarlea.vkkpaiavlklkepvdfeasdgkpvklifll 99 
                 +l+ e+++ +++++sk++a+e++++++a++ +  p + ++ea+l+rek++stgigng+AiPH++le+  ++ + ++++l++p++f+a d++pv+l+f+l
  CTQ30193.1  13 VLNQECTRSQVHCQSKKRALEIISELAAKQ-LSLPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEdTLRAVGVFVQLETPIAFDAIDNQPVDLLFAL 110
                 6899999*****************866666.677777***************************998899***************************** PP

                 E-SSCHH..HHHHHHHHHHHHCSCCHHHHHHC--SHHHHHHHHCH CS
  PTS_EIIA_2 100 alpekdae.hlkilaqLaellkdeefvekLrkakseeeilellee 143
                 ++p ++ + hl++l+ +a+ l d+  +++Lr+a+s ee++e+++e
  CTQ30193.1 111 LVPADQTKtHLHTLSLVAKRLADKAICRRLRAAQSDEELYEIITE 155
                 *******************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1356.96
//
Query:       CTQ30194.1  [L=284]
Description: hypothetical protein; putative nucleoside triphosphate hydrolase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.2e-146  485.3   0.0   5.9e-146  485.1   0.0    1.0  1  ATP_bind_2    P-loop ATPase protein family
  ------ inclusion threshold ------
      0.032   14.8   0.0       0.46   11.0   0.1    2.6  2  AAA_18        AAA domain
      0.047   13.5   0.0        1.6    8.5   0.0    2.2  2  CPT           Chloramphenicol phosphotransferase-like protein
       0.06   13.6   0.0       0.12   12.6   0.0    1.4  1  AAA_28        AAA domain
      0.081   13.2   0.0       0.21   11.9   0.0    1.9  1  AAA_22        AAA domain
       0.11   12.6   0.0       0.42   10.8   0.0    1.9  1  AAA_33        AAA domain
       0.12   12.7   0.2       0.31   11.4   0.2    1.8  1  AAA_16        AAA ATPase domain
       0.13   11.6   0.2       0.13   11.6   0.2    1.5  2  FtsK_SpoIIIE  FtsK/SpoIIIE family


Domain annotation for each model (and alignments):
>> ATP_bind_2  P-loop ATPase protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  485.1   0.0  2.6e-149  5.9e-146       1     284 []       1     282 [.       1     282 [. 0.99

  Alignments for each domain:
  == domain 1  score: 485.1 bits;  conditional E-value: 2.6e-149
                 EEEEEEEESTTSSHHHHHHHHHHHTXEEEBSXXGGGHHHHHHHHH...TTTXXEEEEESTTTSXSSHHHHHHHHHTSXTTSEEEEEEEEXXHHHHHHHC CS
  ATP_bind_2   1 ielvivsGlsGaGksvalraledlGyyvvdnlPlsllpklvdllkeansreskvavvldvrnreesaelleqaeellekaitprilfleadddtlvrry 99 
                 + l+ivsG+sG+Gksvalraled+G+y+vdnlP++llp+l++ l+   +r++++av++dvrn++es+e++eqa+++l++ ++p++lfl+ad++tl+rry
  CTQ30194.1   1 MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARSLA---DRNISAAVSIDVRNMPESPEIFEQAMQNLPECFSPQLLFLDADRNTLIRRY 96 
                 789*****************************************9...*************************************************** PP

                 TSSSXSSTTSXXXSSHHH.HHHHHHHTHHHHHTXSEEEECTTXXHHHHHHHHHHHHHXXXSSS-EEEEEEEEGGG---TT-SEEEE-TTS--GGGSTTT CS
  ATP_bind_2 100 edtrrshPlsakdlsleg.iakerelleplraradlildtselsvrelreklrkalagnsekeltvvvesfGfkyGiPldadlvfdvrflPnPhwveel 197
                 +dtrr+hPls+k+lsle+ i++e++lleplr+radli+dtse+sv+el+e+lr++l g++e+elt+v+esfGfk+GiP+dad+vfdvrflPnPhw+++l
  CTQ30194.1  97 SDTRRLHPLSSKNLSLESaIDEESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKRERELTMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKL 195
                 ******************9******************************************************************************** PP

                 TTS-TTSHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHSS-SEEEEEEEESSSSSHHHHHHHHHHHHHHHTT-EEEEEETTTTTX CS
  ATP_bind_2 198 rPltGkdkevaeyvlkrtevaefieklrsllslvlpslkregksyltiaiGctGGkhrsvaiaeqladyfrsdgktvvarhrdlekr 284
                 rP+tG+dk+va++++++tev++fi+++rs+l+l+lp+l+++++sylt+aiGctGGkhrsv+iaeqladyfrs+gk+v++rhr+lekr
  CTQ30194.1 196 RPMTGLDKPVAAFLDRHTEVHNFIYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKR 282
                 *************************************************************************************97 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00021      0.46       2      25 ..       5      34 ..       4     115 .. 0.68
   2 ?   -1.7   0.0       1.8   3.9e+03      69      91 ..     238     269 ..     188     274 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
      AAA_18  2 lltGtpGvGKttlakeLskrlgf.......g 25
                +++G +G+GK+   ++L+++ gf       +
  CTQ30194.1  5 IVSGRSGSGKSVALRALEDM-GFycvdnlpV 34
                799**************999.3444444441 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.8
      AAA_18  69 s.........aleegknlvidghlaeleseaa 91 
                 +         + +++ +++i  +la+++  + 
  CTQ30194.1 238 RsyltvaigcTGGKHRSVYIAEQLADYFRSRG 269
                 24444555555567777777777777776655 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.038        85       3      31 ..       3      31 ..       1      79 [. 0.72
   2 ?    8.5   0.0   0.00071       1.6     152     173 ..     131     152 ..     127     153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.038
                EEEEEE-TTSSHHHHHHHHHHHSSS-EEE CS
         CPT  3 iilLnGgsssGKsslaralqevldepwlh 31
                +++  G s sGKs   ral ++   +  +
  CTQ30194.1  3 LMIVSGRSGSGKSVALRALEDMGFYCVDN 31
                56889*********99**99876555555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00071
                 SEEEETTSS-HHHHHHHHHTT- CS
         CPT 152 DlevDtsaktpeecArairerl 173
                 Dl vDts++ ++e+A+++r+rl
  CTQ30194.1 131 DLIVDTSEMSVHELAEMLRTRL 152
                 999***************9875 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.4e-05      0.12       3      80 ..       5      87 ..       3     101 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.4e-05
      AAA_28  3 vitGgestGKTtlleaLaar......gypvv..pEaareileeklakgedalpwvedllafaervleeqleeeaaaaankvlfcDr 80
                +++G +++GK+  l+aL+++      + pvv  p+ ar + + +       ++  +++ +  e + e++++++ ++ ++++lf+D 
  CTQ30194.1  5 IVSGRSGSGKSVALRALEDMgfycvdNLPVVllPDLARSLADRNISAAVS-IDV-RNMPESPE-IFEQAMQNLPECFSPQLLFLDA 87
                78999*************99444555555555666666666555544332.333.45555555.4556778888888888888885 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.3e-05      0.21       8      28 ..       4      24 ..       2     141 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.3e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleq 28
                ++v G sG+GK++ lr l + 
  CTQ30194.1  4 MIVSGRSGSGKSVALRALEDM 24
                799**************9886 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00019      0.42       1      90 [.       3     149 ..       3     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdt.........................................................lrrrlfgtdq 42 
                 l+++ G +GsGKs  ++ l     +++ + ++                                                         l+rr+  t +
  CTQ30194.1   3 LMIVSGRSGSGKSVALRALEDMGFYCVDNLPVvllpdlarsladrnisaavsidvrnmpespeifeqamqnlpecfspqllfldadrntLIRRYSDTRR 101
                 67999************9975444666566667777778999999999999999999999999999999998988888888888888888888888888 PP

      AAA_33  43 qsktdytrvl.drlyqilnelarkalsagrnvildatnlsrrerarflk 90 
                  ++  +++++ +++++  ++l+ + l++++++i+d    s +e a++l+
  CTQ30194.1 102 LHPLSSKNLSlESAIDEESDLL-EPLRSRADLIVDTSEMSVHELAEMLR 149
                 8888777744355666666888.57888889999988888888887765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00014      0.31      26      63 ..       3      31 ..       2     168 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
      AAA_16 26 lvllsGesGvGKsslvrellralekdggiflrgkcdql 63
                l+++sG sG+GKs  +r+l +         +   c+++
  CTQ30194.1  3 LMIVSGRSGSGKSVALRALED---------MGFYCVDN 31
                579*************99885.........55666666 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   5.9e-05      0.13      42      59 ..       4      21 ..       3      21 .. 0.94
   2 ?   -3.7   0.1       2.7   6.1e+03     193     212 ..     121     140 ..     111     154 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.9e-05
                  EEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 42 llvaGatgsGKStalntL 59
                  ++v G++gsGKS+al++L
    CTQ30194.1  4 MIVSGRSGSGKSVALRAL 21
                  6899************98 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.7
                   EEEEEEC-HHHHHHHHHHH. CS
  FtsK_SpoIIIE 193 slvvivderieLrlaapkds 212
                    l+  + +r++L+++ ++ s
    CTQ30194.1 121 DLLEPLRSRADLIVDTSEMS 140
                   55566667777777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 2398.16
//
Query:       CTQ30195.1  [L=90]
Description: phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-22   78.4   0.8      4e-22   78.3   0.8    1.0  1  PTS-HPr   PTS HPr component phosphorylation site


Domain annotation for each model (and alignments):
>> PTS-HPr  PTS HPr component phosphorylation site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.8   2.2e-26     4e-22       2      81 ..       4      84 ..       3      85 .. 0.96

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 2.2e-26
                EEEEEEESTCCCSHHHHHHHHHHHTTSSSEEEEEE.....EETTSHHHHHHCTCSTT-EEEEEEESTTHHHHHHHHHHHHC CS
     PTS-HPr  2 ekkvtiknekGlhaRpAamlvqaasefksevtlekkd.kpvnaksilglmsLgvkkGeevtvsaeGedeeealealaelle 81
                +++v+i+n++G+haRpA +l +++++f++ev l++ + ++++a+s+++l++L+ +kG +++v+a+G++e eal+a+ +l++
  CTQ30195.1  4 KQTVEITNKLGMHARPAMKLFELMQNFDAEVLLRNDEgTEAEANSVIALLMLDSAKGRQIEVEASGPQEVEALAAVIALFN 84
                799*******************************9668***************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       348  (0.0194099); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 711.88
//
Query:       CTQ30196.1  [L=241]
Description: biosynthetic peptidoglycan transglycosylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-51  172.7   0.0      6e-51  172.4   0.0    1.1  1  Transgly  Transglycosylase


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.4   0.0   3.4e-55     6e-51      12     177 ..      61     226 ..      51     227 .. 0.97

  Alignments for each domain:
  == domain 1  score: 172.4 bits;  conditional E-value: 3.4e-55
    Transgly  12 enrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlflseertlerKlkeavlAlklekklsKdeILea 110
                 +++++v +++i+p +  av+a+ED++F eh+G+d+ +i +A+++n ++  + +G+ST++qQ++knlfl + r++ rK  ea l++ +e+ +sK++IL+ 
  CTQ30196.1  61 AHSDWVAMDKISPWMGLAVIAAEDQKFPEHWGFDVSAIEKALAHNERHDTRIRGASTLSQQTAKNLFLWDGRSWLRKGLEAGLTVGIETVWSKKRILTV 159
                 5789******************************************999999*****************9***************************** PP

    Transgly 111 YlNsvylgrevyGieaAarayFgkdakdLtlaeaalLagllkaPsrynplenpeeakkrrkvvlerm 177
                 YlN +++g++++G+eaAa++yF+k+a++Lt  eaalLa++l++P ry+    + ++++r+ ++l++m
  CTQ30196.1 160 YLNIAEFGDGIFGVEAAAQRYFHKPASQLTPGEAALLAAVLPNPIRYRADAPSGYVRSRQAWILRQM 226
                 ***********************************************8888899************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1958.12
//
Query:       CTQ30197.1  [L=217]
Description: isoprenoid biosynthesis protein with amidotransferase-like domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00093   19.0   0.0     0.0031   17.3   0.0    1.8  1  DJ-1_PfpI   DJ-1/PfpI family
  ------ inclusion threshold ------
       0.07   12.8   0.0       0.16   11.6   0.0    1.6  2  Catalase_C  C-terminal domain found in long catalases


Domain annotation for each model (and alignments):
>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.5e-07    0.0031      10     151 ..      16     191 ..      11     202 .. 0.62

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.5e-07
                 TBEHHHHHHHHHHHHHTTEEEEEEESS...........TSEEEETTSEEEE-SEEGG.......GCTCCG-SEEEE--BHHHHHHHHT..........S CS
   DJ-1_PfpI  10 gvedvElivpvdvlkragikvdvvsvd...........keevkgsrGlkvtvdasld.......dvkaaeyDalvlpGGragperlre..........n 80 
                 g e  E+++++ +++r+g + +   +d           +e + ++r + v + +          +++a++ Dal++pGG   +++l+           +
  CTQ30197.1  16 GSEIHEAVITLLAIARNGAQAVCFAPDkpqrdvinhltGEAMPEQRNVLVEAARIARgdilplaQARAETLDALIVPGGFGAAKNLSSfaaegsecqvD 114
                 55556666666666666666666666666544443333333333333333333332266666669999************9999886422222222225 PP

                 HHHHHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTSEE--SGGGH..HHHHHTTSEE-SS....SEEEETT.EEEESS CS
   DJ-1_PfpI  81 ekvvelvkefaekgklvaaICagpqlLaaagvlkgrrvTsypavk..dklekagakyvdk....rvvvdgn.lvTsrg 151
                 + +++l+  +++ gk+++  C +p +L +   ++  r+T  + +   d +e+ ga+ v       vv ++n +vT  +
  CTQ30197.1 115 PDLRALALAMHQTGKPLGFMCIAPAMLPKIFAFPL-RMTIGTDLDtaDVVEEMGAEHVPCpvddIVVDEDNkVVTTPA 191
                 5999*********************9999888765.455444444335557777776533444266655556888665 PP

>> Catalase_C  C-terminal domain found in long catalases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.46   4.1e+03     120     135 ..       9      24 ..       2      31 .. 0.63
   2 ?   11.6   0.0   1.8e-05      0.16      52     106 ..      79     135 ..      58     160 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.46
  Catalase_C 120 eepGVyvadsasealv 135
                  + GVy +++ +ea++
  CTQ30197.1   9 GGCGVYDGSEIHEAVI 24 
                 5679998877766444 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.8e-05
  Catalase_C  52 stadaveFDaivvadg..aeslfsakataasslfpagrplqllldayrhgKpigalG 106
                 ++a+a   Da++v +g  a + +s+ a++ s+ +++++   l l + + gKp+g++ 
  CTQ30197.1  79 AQARAETLDALIVPGGfgAAKNLSSFAAEGSECQVDPDLRALALAMHQTGKPLGFMC 135
                 689999*********87644444445799999999*******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1590.08
//
Query:       CTQ30198.1  [L=779]
Description: hybrid sensory histidine kinase in two-component regulatory system with ArcA [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-30  104.7   6.4    3.3e-30  104.7   6.4    1.8  2  HKR_ArcB_TM   Histidine kinase receptor ArcB trans-membrane d
    1.1e-29  103.2   0.0    2.4e-29  102.1   0.0    1.7  1  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    5.6e-22   78.0   0.3    1.2e-21   76.9   0.3    1.6  1  Response_reg  Response regulator receiver domain
    7.6e-18   64.6   0.0    2.3e-17   63.0   0.0    1.9  1  PAS           PAS fold
    3.4e-16   59.0   2.1    2.5e-15   56.2   0.1    2.8  2  HisKA         His Kinase A (phospho-acceptor) domain
    1.2e-14   54.4   0.0    2.8e-14   53.3   0.0    1.7  1  PAS_4         PAS fold
    1.7e-11   44.2   1.2    1.3e-10   41.3   0.0    2.8  2  Hpt           Hpt domain
    6.1e-06   26.4   0.0    1.5e-05   25.2   0.0    1.7  1  PAS_9         PAS domain
    0.00041   20.2   0.0     0.0011   18.9   0.0    1.7  1  HATPase_c_3   Histidine kinase-, DNA gyrase B-, and HSP90-lik
    0.00069   19.0   0.6     0.0013   18.1   0.6    1.4  1  CCB1          Cofactor assembly of complex C subunit B
     0.0044   17.0   0.0      0.019   15.0   0.0    2.2  2  PAS_8         PAS domain
  ------ inclusion threshold ------
        1.3    8.1   5.2        2.1    7.3   5.2    1.3  1  Atg14         Vacuolar sorting 38 and autophagy-related subun
        1.5    9.5   9.5        1.9    9.2   7.2    2.3  2  ING           Inhibitor of growth proteins N-terminal histone


Domain annotation for each model (and alignments):
>> HKR_ArcB_TM  Histidine kinase receptor ArcB trans-membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   6.4   2.4e-33   3.3e-30       1      75 []      15      89 ..      15      89 .. 0.98
   2 ?    0.1   0.0       1.1   1.5e+03      59      72 ..      87     100 ..      87     100 .. 0.90

  Alignments for each domain:
  == domain 1  score: 104.7 bits;  conditional E-value: 2.4e-33
  HKR_ArcB_TM  1 vlrLGtvrfSlllvlllivlalliqillslllsgeveiedllrsilfgllsaPwvlYFlsvlveqLEeSRqrLsk 75
                 +++LG vrfS+ll+l+l+vla+++q++++++l+g+ve  d++rsi+fgll++Pw++YFlsv+veqLEeSRqrLs+
   CTQ30198.1 15 MMKLGLVRFSMLLALALVVLAIVVQMAVTMVLHGQVESIDVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSR 89
                 68***********************************************************************85 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.1
  HKR_ArcB_TM  59 lsvlveqLEeSRqr 72 
                  ls+lv++LEe R+r
   CTQ30198.1  87 LSRLVDKLEEMRER 100
                  789*******9986 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.0   1.8e-32   2.4e-29       2     109 ..     395     505 ..     394     508 .. 0.92

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 1.8e-32
                 HHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE.TEEEEEEEESSSSSTTHHHTGTCSTTCH..HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEE CS
   HATPase_c   2 dekrLrqiisnlvdNavkfatkageieveikase.ddlvisveDnGiGipkedlkklfekfsq..ddstkrggggtGlGlsivkklvelmgGeiwvese 97 
                 d +rLrqi++nl++Navkf++++g + v+++ +e d l+++veD+GiGip+++++k+f+ ++q  d++      gtG+Gl+++++l++ mgG+i+v+s+
  CTQ30198.1 395 DGTRLRQILWNLISNAVKFTPQGGGVNVRVRYDEgDILHFEVEDSGIGIPEAEQDKIFAMYYQvkDSHGGKPATGTGIGLAVSRRLARNMGGDISVTSQ 493
                 889****************889999999999877899**************************97666666679************************* PP

                 TTTEEEEEEEEE CS
   HATPase_c  98 pgrGttftftlp 109
                 pg+G tft+t+ 
  CTQ30198.1 494 PGKGATFTLTVH 505
                 ********9986 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.3   8.8e-25   1.2e-21       1     111 [.     529     640 ..     529     641 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 8.8e-25
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCT...TTSEEEEEESSTSHHHHHHHHHCTE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireed...pelpviiltahseeedavealkaga 94 
                   vl+v+D +l++ + r++le+ g  +v++a +gk+ale+++  ++dl+llDi++p+m+Gl++ ++++++    + +p ++lta+   ++++e+l+ag+
    CTQ30198.1 529 VLLVEDIELNVIVARSVLEKLGN-SVDVAMTGKAALEMFEPGEYDLVLLDIQLPDMTGLDISRKLKQRFaadELPPLVALTANV-LKNKKEYLDAGM 623
                   89*********************.*****************************************9999765559999999877.799********* PP

                   SEEEESSG-HHHHHHHH CS
  Response_reg  95 ddflsKpfdpeeLlkal 111
                   dd+lsKp++  +L++++
    CTQ30198.1 624 DDVLSKPLSVPALTAMI 640
                   *************9998 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   1.7e-20   2.3e-17       2     113 .]     156     266 ..     155     266 .. 0.93

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 1.7e-20
                 HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC......TTSSEEEEEEEEE CS
         PAS   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesrageisfkl......rdgrpihlevras 94 
                 +lr++l+++pd +f ++ed +++++N+a+e l+G s++++++ +  d+++e       e+ e++le+ e+    ++s+++      +dgr+ ++e+r +
  CTQ30198.1 156 FLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLKPQDVYSE-------EAAEKVLETDEKVFRHNVSLTYeqwldyPDGRKACFEIRKV 247
                 6899*********************************************66.......6888888888888888888888888888************* PP

                 EEEETTEEEEEEEEEEEES CS
         PAS  95 pvrdaggeilgflgvlrdi 113
                 p++d+ g+++g++g++rdi
  CTQ30198.1 248 PYYDRVGKRRGLMGFGRDI 266
                 ******************8 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4      0.24   3.3e+02      41      60 ..      77      96 ..      72     118 .. 0.84
   2 !   56.2   0.1   1.8e-18   2.5e-15       2      66 ..     283     346 ..     282     347 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.24
                HHHHHHHHHHHHHHHHHHHH CS
       HisKA 41 letiesearrldhlvedlLd 60
                +e++e++ +rl++lv+ l +
  CTQ30198.1 77 VEQLEESRQRLSRLVDKLEE 96
                78889999999999999844 PP

  == domain 2  score: 56.2 bits;  conditional E-value: 1.8e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsriea 66 
                 ++ f+++++HELrtPL++i g + +L ++ +lt e+++yl+ti+ +a  l ++ +d+ d+ ++e 
  CTQ30198.1 283 KTTFISTISHELRTPLNGIVGLSRILLDT-ELTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMER 346
                 789***********************996.9*******************************985 PP

>> PAS_4  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0     2e-17   2.8e-14       1     110 []     161     271 ..     161     271 .. 0.99

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 2e-17
       PAS_4   1 ldslpdalavldpdgrvlyaNaaaaelfgappeellGktlaellpeedaarleralrrvlegeepiefleelll.pgeerhyelrllPlrdesGevigv 98 
                 ld++pd++++ ++d  +  +N+a++ l g + ++l+  +++++++ee+a+ + + +++v + + +++ ++ l+  +g+   +e+r++P  d+ G+ +g+
  CTQ30198.1 161 LDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLKPQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYpDGRKACFEIRKVPYYDRVGKRRGL 259
                 79***********************************************************************9************************* PP

       PAS_4  99 lvisrDiTerrr 110
                 ++++rDiTer+r
  CTQ30198.1 260 MGFGRDITERKR 271
                 **********97 PP

>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.0       1.2   1.7e+03      11      22 ..      84      99 ..      73     137 .. 0.56
   2 !   41.3   0.0   9.6e-14   1.3e-10       3      74 ..     687     761 ..     685     772 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.2
                HHHHHHHHHHH....S CS
         Hpt 11 eelleqleqal....d 22
                +++l +l ++l    +
  CTQ30198.1 84 RQRLSRLVDKLeemrE 99
                4444444333332221 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 9.6e-14
                 HHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHCTSCHHHHHHHH........H CS
         Hpt   3 lelfleeaeelleqleqaldqedlqelaraaHtLKGsagmlGltelaelahelEdlldragelelepelle........a 74 
                 l++f   ++ ++  le++l+++d + + ++ H++KG+ag++Gl+++++l +++++      +l+++ ++++        +
  CTQ30198.1 687 LAVFEKMMPGYMSVLESNLTARDQKGIVEEGHKIKGAAGSIGLRHIQQLGQQIQT-----PDLPAWSDNVAewveemksE 761
                 6789999************************************************.....**********9655544444 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.1e-08   1.5e-05       3     104 .]     167     268 ..     165     268 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.1e-08
       PAS_9   3 gilidnpdgrilyaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqgrk.kerevevvlirkngetfwvlltaspvkdddgelvgiivilr 100
                  ++  n+d +   +N+a++ l+G s++++++ +  d++ +++ a++ l+   +  r     ++e  l +++g++  ++++ +p +d  g+ +g+ ++ r
  CTQ30198.1 167 LVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLKPQDVY-SEEAAEKVLETDEKVFRHnVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRRGLMGFGR 264
                 5666789999999*************************.444444444444444444889*************************************** PP

       PAS_9 101 Dite 104
                 Dite
  CTQ30198.1 265 DITE 268
                 ***8 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   7.6e-07    0.0011       7     115 ..     403     516 ..     397     527 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 7.6e-07
  HATPase_c_3   7 laelvdNsld..AdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkGiGlklA...slslgkkltvitk.keges 98 
                  l  l+ N++    +   v++ v  ++g+   + +eD G G++e+e ++ + +  + k+++ +++ +G  GiGl  +   +  +g +++v++   +g +
   CTQ30198.1 403 LWNLISNAVKftPQGGGVNVRVRYDEGDILHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATG-TGIGLAVSrrlARNMGGDISVTSQpGKGAT 499
                  66788888874344445999999999999*****************************776777776.699975442225678888999997466777 PP

  HATPase_c_3  99 stltldvdkidkenekv 115
                   tlt+   +i++e e +
   CTQ30198.1 500 FTLTVHAPAIAEEVEDT 516
                  78888888887766555 PP

>> CCB1  Cofactor assembly of complex C subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.6   9.5e-07    0.0013      72     165 ..      19     119 ..      13     122 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 9.5e-07
        CCB1  72 GlvapslflAifLtllaalgllclaLVlsilvpelgn..lflllvllsPlAgvfYwkkakrkeqvslkles......eeeeseseitveahrdeleelq 162
                 Glv+ s+ lA+ L++la++  +++++Vl+ +v++++    +++ +l++P+A +f     ++ e+ + +l++      e +e+  ++ v+  +d++++l+
  CTQ30198.1  19 GLVRFSMLLALALVVLAIVVQMAVTMVLHGQVESIDVirSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRlvdkleEMRERDLKLNVQ-LKDNIAQLN 116
                 99*******************************88753367778899********9999999999999999888854444444455554.378888888 PP

        CCB1 163 kel 165
                 +e+
  CTQ30198.1 117 QEI 119
                 876 PP

>> PAS_8  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.4e-05     0.019       2      52 ..     156     202 ..     155     234 .. 0.71
   2 ?   -2.3   0.0       3.6     5e+03      29      45 ..     561     576 ..     560     600 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.4e-05
       PAS_8   2 rlralfesspdgiavvdlgdrivdvNqaalellGysadlkgellgqllpvl 52 
                 +lr+++++spd ++  ++++ +  +N+a++ l+G +  +  +l++ l p+ 
  CTQ30198.1 156 FLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTG-K--SEKQLIH-LKPQD 202
                 89************6666678*************.4..4444443.33322 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.6
       PAS_8  29 aalellGysadlkgell 45 
                 aale++  + + +  ll
  CTQ30198.1 561 AALEMFE-PGEYDLVLL 576
                 8999996.323333333 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   5.2    0.0016       2.1      79     141 ..      83     156 ..      73     207 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0016
       Atg14  79 lrerlqelkdklsqlk....keieekkkklaklsdklk.......kRrsdleslqneleerrkkqiaklqdaik 141
                 +r+rl++l dkl++ +    k + + k ++a+l++++        +R  +le l+ e++er+++qi+  q++ +
  CTQ30198.1  83 SRQRLSRLVDKLEEMRerdlKLNVQLKDNIAQLNQEIGerekaeaERETTLEQLKIEMKEREETQIQLEQQSSF 156
                 22222222222222220000234444444444444444555555588888888888888888888887776655 PP

>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   7.2    0.0013       1.9      15      72 ..      89     146 ..      76     155 .. 0.83
   2 ?   -1.4   0.0       2.5   3.5e+03      58      85 ..     330     357 ..     302     360 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS..S-HHHHHHHHHHHHHHHHHHHHH CS
         ING  15 elqrnltelreiDakvqellkeidskiekflkngslqknekeeelsriqeelkeaqel 72 
                  l ++l+e+re D k++ +lk++  ++++ + ++++++ e+e  l++++ e+ke +e 
  CTQ30198.1  89 RLVDKLEEMRERDLKLNVQLKDNIAQLNQEIGEREKAEAERETTLEQLKIEMKEREET 146
                 467899*************************888888888888888888888876664 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING  58 elsriqeelkeaqelldeKiqlaqqald 85 
                  l +i ++++++ ++ + K+ql +q +d
  CTQ30198.1 330 TLGNIFNDIIDMDKMERRKVQLDNQPVD 357
                 4557888899999999999999888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1682  (0.0938145); expected 358.6 (0.02)
Passed bias filter:                      839  (0.0467957); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 5393.47
//
Query:       CTQ30199.1  [L=354]
Description: Mannonate dehydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.6e-157  523.8   0.0   1.8e-157  523.6   0.0    1.0  1  UxuA          D-mannonate dehydratase (UxuA)
    4.6e-11   42.6   0.0    6.5e-11   42.1   0.0    1.2  1  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> UxuA  D-mannonate dehydratase (UxuA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  523.6   0.0    2e-161  1.8e-157       1     350 []       1     353 [.       1     353 [. 0.98

  Alignments for each domain:
  == domain 1  score: 523.6 bits;  conditional E-value: 2e-161
                 S-BEEE---T.T-SS-HHHHHHH.T--EEEE--TTS-TTS---HHHHHHHHHHHHHTT-EEEEEE-----HHHHHT-TTHHHHHHHHHHHHHHHHHTT- CS
        UxuA   1 meltlrwygeeddpvsleeirqipGvkgvvsalhdipagevWekeeilklkeeiekagltlevvesvpvhediklgteerdryienykqtirnlakiGv 99 
                 m++t+rw+g+e+d++sle+irq+pGv+gvv+al+d+++gevW++++i +l  +  +agl++ev+esv++h+dik+g+++r+ryi+ny+qtirnla++Gv
  CTQ30199.1   1 MQMTMRWFGPEEDKISLEHIRQVPGVEGVVGALYDVAVGEVWPVDKIERLVGQAHAAGLKMEVIESVNIHDDIKIGLPTRERYIANYQQTIRNLARFGV 99 
                 99************************************************************************************************* PP

                 -EEEE---SS--S--SEEEEE-TTS-EEEEE-HHHHHHHHHH.TT--TTGGGGS--TT-S---HHHHHHHHGCCTT--HHHHHHHHHHHHHHHHHHHHH CS
        UxuA 100 kvvCYnfmpvldWtrtdleykledgskalrfdkkeiealelk.ilrrkeaekeytlPgaeeerldelrelleaykkideeklrenlayFlkeiiPvaee 197
                 kv+CYnfmpv+dW++td++y l+dgs +++f+kk+i++   + ++++ e+++ + lPg+e+erl+e+++l+++y+ +d++klrenl yFl+++iPv+ee
  CTQ30199.1 100 KVICYNFMPVFDWMKTDMNYVLPDGSLTMAFEKKDIDKRLEDvVKEVLENSNGFALPGWEPERLAEVQTLFAKYSAVDDQKLRENLVYFLQAVIPVCEE 198
                 *************************************988885777889999*********************************************** PP

                 HT-EEEE---SSSS-BTTB--SSSSHHHHHHHHHH--STTEEEEEEHHHHTTSTT--HHHHHHHHGG..GEEEEE--EEEE-SSTT-EEEE-TTS..SS CS
        UxuA 198 vgvklaihPDDPPlpifGlpRivstkedlqrlldlvdspangitlCtGslgaradndlvemikefad..riyFahlRnikreedeksFveaahle..Gs 292
                 vgvk+aihPDDPP++ifGlpR+v++++dl++++ +vdspangitlCtGs+++++dnd+++++ ef+   ri+Fah+Rnik  + +k+F+e ah +  Gs
  CTQ30199.1 199 VGVKMAIHPDDPPYSIFGLPRVVKNRDDLDWICRAVDSPANGITLCTGSIAEDPDNDVYAILAEFTRrkRIHFAHVRNIKLIQ-DKDFYECAHPSeyGS 296
                 *****************************************************************97779************5.78*******999*** PP

                 S-HHHHHHHHHHHHHHH-EE-----B-GGGG--STT--HHHHHHHHHHHHHHHHHHHH CS
        UxuA 293 vdlaevvkalleeeyrrylRpDhgrlllddkklrPGYslidRllgiaylrGllealek 350
                 +d+++v++al+++++++y+RpDhgr +++++  rPGY+l+dR+lg++yl+Gl+eal+k
  CTQ30199.1 297 LDMYKVMQALYDNGFDGYIRPDHGRFIWGET-GRPGYGLFDRALGVTYLKGLWEALSK 353
                 *******************************.***********************986 PP

>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   7.3e-15   6.5e-11      29     193 ..      46     279 ..      27     319 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 7.3e-15
                   HHHHHHHHHHHTTSEEEEEEECCCHSTCTHCHTTCS....HHHHHHHHHHHHHHHHHHTBSE..EEEEBCC.......................... CS
  AP_endonuc_2  29 elrelrkaldelglriaslslftrfgypdederear....reesvdalkraielaaaLGapl..lvlhpGt.......................... 93 
                   ++++l  ++ ++gl++ +++  + + +             re+ +++++++i+  a++G+++   +++p                            
    CTQ30199.1  46 KIERLVGQAHAAGLKMEVIESVNIHDDIK------IglptRERYIANYQQTIRNLARFGVKVicYNFMPVFdwmktdmnyvlpdgsltmafekkdid 136
                   66777777777777766666655555533......133447899*****************9444566555************************** PP

                   .................................GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEEEEE--TTTTSSSTC.......HHHHHHHHH CS
  AP_endonuc_2  94 .................................agagpkgseeeawerlaeslneladyaekegvklalEtlagsgvelgd.......eelarllda 150
                                                    +  ++  +++  +e+l+  l+++++++e++gvk a+++ +++++ +g        ++l+ +++a
    CTQ30199.1 137 krledvvkevlensngfalpgweperlaevqtlFAKYSAVDDQKLRENLVYFLQAVIPVCEEVGVKMAIHPDDPPYSIFGLprvvknrDDLDWICRA 233
                   *********************************8899****************************************9999**************** PP

                   HTTTTEEEEEEHHHHHHH.TTTHHHHHHHHHGG..EEEEEE.EESS CS
  AP_endonuc_2 151 vdspnvgvclDtgHllia.eedvddalraladr..ikhvHikDakg 193
                   vdsp  g++l tg +     +dv+++l+++ +r  i++ H+  +k+
    CTQ30199.1 234 VDSPANGITLCTGSIAEDpDNDVYAILAEFTRRkrIHFAHVRNIKL 279
                   ***********************************88888866665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2601.33
//
Query:       CTQ30200.1  [L=338]
Description: putative oxidoreductase, Zn-dependent and NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-35  118.9   1.9    1.3e-34  118.4   1.9    1.3  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    1.2e-15   57.6   0.0    2.4e-15   56.7   0.0    1.5  1  ADH_zinc_N    Zinc-binding dehydrogenase
      7e-06   25.7   0.0    1.3e-05   24.7   0.0    1.5  1  Glu_dehyd_C   Glucose dehydrogenase C-terminus
    0.00041   21.4   0.0    0.00086   20.4   0.0    1.6  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
     0.0024   18.0   0.0     0.0052   16.8   0.0    1.6  1  Shikimate_DH  Shikimate / quinate 5-dehydrogenase
     0.0029   17.8   0.2      0.012   15.9   0.2    1.9  2  TrkA_N        TrkA-N domain
  ------ inclusion threshold ------
      0.025   14.7   0.0      0.044   13.9   0.0    1.4  1  DapB_N        Dihydrodipicolinate reductase, N-terminus
      0.092   12.1   0.1       0.14   11.6   0.1    1.2  1  PALP          Pyridoxal-phosphate dependent enzyme
       0.11   12.6   1.0       0.35   11.0   1.0    1.8  1  NADH_4Fe-4S   NADH-ubiquinone oxidoreductase-F iron-sulfur bi


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   1.9   6.5e-38   1.3e-34       2     108 ..      25     130 ..      24     131 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 6.5e-38
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvsldGgfaeyvv 100
                 +ev++k++ agiCgsD+hi++g +++ +k+p ++GHE+ G++++vg++v+  ++G+rV+v+p++scg+C+ C+ g++n+C++ +++gv++dGgf++y +
  CTQ30200.1  25 HEVRVKIAFAGICGSDVHIYHG-HNPFAKYPRVIGHEFYGIIDAVGEQVSPARIGERVAVDPVVSCGHCYPCSVGRPNVCTQLQVIGVHRDGGFSDYAC 122
                 89********************.8*************************************************************************** PP

                 ECGGGEEE CS
       ADH_N 101 vpekklvk 108
                 vp+k++++
  CTQ30200.1 123 VPAKNAWR 130
                 **999865 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0   1.2e-18   2.4e-15       1     129 [.     171     297 ..     171     298 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 1.2e-18
                 HHHHHHHHHHH.HTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEE CS
  ADH_zinc_N   1 gvGlaavqlAk.alGa.eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeef 97 
                 ++Gl  +q++k  +G+ +vi+vd+ +e+l++a+++Gad ++++++  l e++++      + +v++++ ++a l++a+ l+ p  r+ + G++++ +++
  CTQ30200.1 171 PMGLTIIQALKgVYGVkQVIVVDRIAERLQMARENGADLTLDNTDQPLAEQLAQRQ--LAPTLVIDAACHPAILQEAILLASPAARIGILGFSGEASTL 267
                 79*********99******************************5546777777766..69*******************************9888888* PP

                 EHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  98 dlrnlllkeksilGsllgslreefkealdlla 129
                 + + ++ ke+si  s l s   +f+ ++d+++
  CTQ30200.1 268 TQQSITSKEISIFSSRLNS--GRFPLVIDWME 297
                 *****************99..99999999976 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   6.8e-09   1.3e-05      29     208 ..     159     329 ..     138     337 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 6.8e-09
  Glu_dehyd_C  29 wepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatYv.dsretpv.deipeaseemdlvvEaTGsakhafeaiealapn 124
                     + alv GaG++GL  + +l+    g+++v v++r  +   ++++ +e Ga    d+  +p+ +++++ +  + lv++a  +++ + eai   +p+
   CTQ30200.1 159 TAQDIALVYGAGPMGLTIIQALKG-VYGVKQVIVVDRIAE---RLQMARENGADLTlDNTDQPLaEQLAQRQLAPTLVIDAACHPAILQEAILLASPA 252
                  345679****************95.899*******98554...7889999999653255555552778999999***********************9 PP

  Glu_dehyd_C 125 GvaaLlGvpedsevevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpeslldelvtkvvdldeleeAfedddetiKt 208
                    + +lG + +       ++l ++ + + ++ + s   n  +f   +d++++      ++l+t+ ++l++++eA e   ++ Kt
   CTQ30200.1 253 ARIGILGFSGEA------STLTQQSITSKEISIFSSRLNSGRFPLVIDWMEKGL-IRPEALITHCMPLEQVKEAMEIFANDRKT 329
                  999999988766......667777777777888888888899999999998754.447999********999998844444333 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.3e-07   0.00086       2     126 ..     206     327 ..     184     335 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.3e-07
                   T-SEEEETTSTTHH.....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHH CS
  ADH_zinc_N_2   2 GAdevidyrtedfe.....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileel 93 
                   GAd  +d++++ ++     +++   +  +v+d++  +a+l++++ + ++ +r+  +g   +s + + +   + + + k   +fs + +   + +  +
    CTQ30200.1 206 GADLTLDNTDQPLAeqlaqRQL---APTLVIDAACHPAILQEAILLASPAARIGILG---FSGEASTL--TQQSITSKEISIFSSRLN-SGR-FPLV 292
                   7777887775555544432222...35688888777777677763335546665554...33444444..445677777777766666.777.**** PP

                   HHHHHHHH----..EEEEEEGGGHHHHHHHHHSS- CS
  ADH_zinc_N_2  94 aalieeGklrpv..vdrvfpleeaaeAhrylesgr 126
                    +++e+G +rp   +++ +ple+++eA++  ++ r
    CTQ30200.1 293 IDWMEKGLIRPEalITHCMPLEQVKEAMEIFANDR 327
                   **********86225656**********9876655 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.6e-06    0.0052       9      54 ..     158     204 ..     149     239 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.6e-06
                   ..TT-EEEEES-SHHHHHHHHHHHCC.T-CEEEEEESSHHHHHHHHH CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlak.gvkkvvvaNRtlerakelae 54 
                     ++  +l+ GaG m+  ++++L    gvk+v+v+ R  er +  +e
    CTQ30200.1 158 PTAQDIALVYGAGPMGLTIIQALKGVyGVKQVIVVDRIAERLQMARE 204
                   4567778999**************977**************876544 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   5.9e-06     0.012       2      44 ..     165     209 ..     164     233 .. 0.89
   2 ?   -0.3   0.0      0.61   1.2e+03      32      58 ..     217     245 ..     209     250 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.9e-06
                 EEES-SHHHHHHHHHHHH.TT.EEEEEEESSHHHHHHHHHTTSEE CS
      TrkA_N   2 iiiGlGrvGrslaeeLse.gg.kdvvvidkdeerveelreeglev 44 
                 ++ G+G +G ++++ L+  +g k+v+v+d+  er++ +re+g++ 
  CTQ30200.1 165 LVYGAGPMGLTIIQALKGvYGvKQVIVVDRIAERLQMARENGADL 209
                 799***************877999****************99764 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.61
                 HHHHHHHHTT.SE.EEES-TTSHHHHHHT CS
      TrkA_N  32 erveelreeg.le.vvvgdatdeevLeea 58 
                   +e+l+++  ++  v+  a ++++L+ea
  CTQ30200.1 217 PLAEQLAQRQlAPtLVIDAACHPAILQEA 245
                 44666665554332555566677777776 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.2e-05     0.044       4      88 ..     165     249 ..     163     283 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.2e-05
                 EEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTT.TTBHHHHSSSS--S-BEBSSHHHHHHH-SEEEE-S-HHHHHHHHHHHH CS
      DapB_N   4 avvGasGrmGkevvkaveeaedlelvaavdrkesele.gkdagellglgklgvavtddleevlekadvliDFTtpeavlenlklal 88 
                 +v+Ga G mG ++++a++   +++ v +vdr  ++l+ +++ g  l l++++ ++ ++l++   +   +iD   + a+l+ + l++
  CTQ30200.1 165 LVYGA-GPMGLTIIQALKGVYGVKQVIVVDRIAERLQmARENGADLTLDNTDQPLAEQLAQRQLAPTLVIDAACHPAILQEAILLA 249
                 58999.*************************996665267889999999************9999******985555444433333 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   6.8e-05      0.14      42     124 ..     149     225 ..     137     253 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.8e-05
                 HHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHH.T-EEEEEEETTS-HHHHHHHHHTT-EEEEECCHHHHHHHHHHHHHHH CS
        PALP  42 aeyllarlkegtgaktvveassGNhgralAaaaall.GlkvtivvpadaspekvallrllGaevvevggdydeavaaaaelaae 124
                 a+++ a+l+++ +++  ++ ++G +g+ ++ a +   G+k +ivv++ a   ++++ r+ Ga++++ ++d   a+    +la++
  CTQ30200.1 149 AANITAQLQPT-AQDIALVYGAGPMGLTIIQALKGVyGVKQVIVVDRIAE--RLQMARENGADLTLDNTDQPLAE----QLAQR 225
                 56677778888.9*********************666***********97..************99855444444....44444 PP

>> NADH_4Fe-4S  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.0   0.00018      0.35      14      33 ..      88     107 ..      85     124 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
                  --S--HHHHIIIIHHHHHHH CS
  NADH_4Fe-4S  14 sCGkCtpCreGtkrllelle 33 
                  sCG C pC +G + +   l+
   CTQ30200.1  88 SCGHCYPCSVGRPNVCTQLQ 107
                  9**********998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2691.93
//
Query:       CTQ30201.1  [L=427]
Description: Hexuronate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-64  216.2  65.4    2.1e-56  191.3  41.1    2.0  2  MFS_1     Major Facilitator Superfamily
    5.4e-10   38.7  35.0    7.1e-10   38.3  35.0    1.2  1  Sugar_tr  Sugar (and other) transporter
    0.00048   18.6  29.2    0.00098   17.5  10.4    3.5  3  OATP      Organic Anion Transporter Polypeptide (OATP) family
    0.00053   19.4  32.5      0.028   13.7  32.5    2.0  1  MFS_4     Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
       0.29   11.4   0.0       0.29   11.4   0.0    2.3  2  DUF4381   Domain of unknown function (DUF4381)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.3  41.1     6e-60   2.1e-56       1     351 [.      13     378 ..      13     378 .. 0.87
   2 !   38.7  16.4   1.5e-13   5.3e-10      58     179 ..     300     422 ..     295     426 .. 0.80

  Alignments for each domain:
  == domain 1  score: 191.3 bits;  conditional E-value: 6e-60
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+l++++++l+r +l++++p ++ +dl +++ ++g++++ +++g+av+++++G  +d+fG+  v+ l++ l++l++ l ++a++++ +lvlrvl G+++
  CTQ30201.1  13 LFLVYMINYLDRVALSITVP-MIEKDLALNAEQFGIIFGSFFFGYAVFNFIGGLAVDKFGATLVMGLAVGLWSLFCGLTAVATGFYSMLVLRVLFGMAE 110
                 79******************.9*****************************************************44444469999************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 g + ++++ +i  wfpk++ + a+g+lsag+ lG +++ ++ g+la ++gWr +f+i+ ++++++++ +++    +p ++k++s++e++          
  CTQ30201.1 111 GPICASANKMINGWFPKKQAATAVGFLSAGSPLGGAVAGPIVGYLALAFGWRPAFMIIFAIGIVWMIAWFFIAANSPEKHKKVSQEELKlinkmkeeev 209
                 *****************************************************************9987777788888888888888879999988777 PP

       MFS_1 189 ..kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr....lgr....rrrl 277
                   +  +++ + + +++ lk+p +++  +a+++   +++++l+++p+yl+++++l+   +++l+ +++++vg+++  l+g++sd+    +gr    r++ 
  CTQ30201.1 210 alETIENQTAHS-LGYYLKQPIILVTAFAFFCYNYILFFFLSWFPSYLVQQHHLD-IKQMSLTTMIPWIVGFVGLALGGYISDKifklTGRlllsRKIV 306
                 755555555555.********665555555555556666****************.8999999*********************877733355558888 PP

       MFS_1 278 llallllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggal 351
                 l+ +ll++++++gla +  +   v+ +++l+ +++ +l ++ ++++a+++d++ +++ g asg++ ++gs++g++
  CTQ30201.1 307 LVVCLLMAAICVGLAGTVSS---VVPAVLLMSVSIfFLYVTGAIYWAIIQDVVHKSRVGGASGFIHLIGSVSGIV 378
                 88899999999998888888...6666666666665777779*****************************9985 PP

  == domain 2  score: 38.7 bits;  conditional E-value: 1.5e-13
       MFS_1  58 rfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.Wravf 154
                  ++r+ vl+++ll+ a++ +l++++ ss+ + ++l  ++ ++  +  ++  a+i d+++k++ g a g++ +  s++ i+gp++ g++++s g + ++f
  CTQ30201.1 300 LLSRKIVLVVCLLMAAICvGLAGTV-SSVVPAVLLMSVSIFFLYVTGAIYWAIIQDVVHKSRVGGASGFIHLIGSVSGIVGPIVTGYIVQSTGkFDSAF 397
                 467888************5555555.55554444444455555566666668899**********************************77777***** PP

       MFS_1 155 yilaivsllafvlfllllpeepper 179
                 ++++ +++l+++l+l+++ +++++ 
  CTQ30201.1 398 VLAGTIAALGALLVLFVIKTPRVTM 422
                 ************9888887777665 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3  35.0     2e-13   7.1e-10      44     445 ..      41     422 ..      14     427 .] 0.82

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 2e-13
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                  + + g+i+++f++G ++  +++gl++d+fG   ++  a+ l +    l+a+a+    ++ ++v Rvl G++ G +++ +   i+   pkk + + v++
  CTQ30201.1  41 NAEQFGIIFGSFFFGYAVFNFIGGLAVDKFGATLVMGLAVGLWSLFCGLTAVAT---GFYSMLVLRVLFGMAEGPICASANKMINGWFPKKQAATAVGF 136
                 45689*******************************999999999999999999...9****************************************9 PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH..... CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeeekas 241
                    +  +G  va  +   l+   +   wr  + + +++ ++ +i+++f+          +  e+ k+v ++   e +   +++ee  +le  ++++ +s
  CTQ30201.1 137 LSAGSPLGGAVAGPIVGYLALAFG---WRPAFMIIFAIGIVWMIAWFFIA--------ANSPEKHKKVSQE---ELKLINKMKEEEVALETIENQTAHS 221
                 999999999888777766777666...88888888877777666666665........3444566666666...7777888888888888887766777 PP

                 HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..HHHHHHHHHHHHHHHHHHHHHHHHS-SHHH.HHHHHHHHHHHHHHHH.. CS
    Sugar_tr 242 wkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks..llvtiivgvvnfvatfvaiflvdrfGRRtl.lllGaagmaicfvilg.i 336
                 ++ +l++      +l+ +   ++ ++   +++  +++++ ++ +l+ +   l+t+i  +v fv    + +++d++ + t  lll+  + ++++++++ i
  CTQ30201.1 222 LGYYLKQPI----ILVTAFAFFCYNYILFFFLSWFPSYLVQQHHLDIKqmSLTTMIPWIVGFVGLALGGYISDKIFKLTGrLLLSRKIVLVVCLLMAaI 316
                 888888722....4444444445555555666789*****99988877779**********************98554432555555555555566534 PP

                 .HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 337 valllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvff 435
                 ++  + a+ ++ s+v  v+++ + ++f    g + w +++++  +s  + a+ +   +  ++ ++  +++ +i+++ g++ + +v ag  ++     ++
  CTQ30201.1 317 CV--GLAG-TVSSVVPAVLLMSVSIFFLYVTGAIYWAIIQDVVHKSRVGGASGFIHLIGSVSGIVGPIVTGYIVQSTGKFDSAFVLAGTIAALGALLVL 412
                 44..4444.2459************************************************************************************** PP

                 HS--STT--C CS
    Sugar_tr 436 fvpetkgrtl 445
                 fv+ t  +t+
  CTQ30201.1 413 FVIKTPRVTM 422
                 **99987776 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   2.9    0.0006       2.1       2      86 ..       9      93 ..       8      99 .. 0.87
   2 !   17.5  10.4   2.7e-07   0.00098     215     381 ..     161     316 ..      93     325 .. 0.80
   3 !    4.0   1.6    0.0035        13     460     524 ..     327     390 ..     323     392 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0006
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  2 flvllsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgslllalP 86
                 ++ll l+++++ +  + +++t+  iEk   l+ ++ g+i  s+  g++++  + +   ++   + ++g+++ l +l++ l+a+ 
  CTQ30201.1  9 IVLLLFLVYMINYLDRVALSITVPMIEKDLALNAEQFGIIFGSFFFGYAVFNFIGGLAVDKFGATLVMGLAVGLWSLFCGLTAVA 93
                578899999999*******************************999999998888888888888888888888888888888775 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 2.7e-07
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 215 WWlgflilgvllllaaiplffFPkelpkkkeerakkkseeesaekkeekkkkeksksseeeelkslkdfpkalkrllknpifllvilssvfeillvaGf 313
                 W   f+i+ ++ ++  i  ff   + p+k+++ ++++ +    +k++e++   ++ ++         +  ++l   lk+pi l++ ++  ++ +++  f
  CTQ30201.1 161 WRPAFMIIFAIGIVWMIAWFFIAANSPEKHKKVSQEELKL-I-NKMKEEEVALETIEN---------QTAHSLGYYLKQPIILVTAFAFFCYNYILFFF 248
                 5557999999999999999999999997777776554432.2.233333333333333.........357899************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 314 itFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkk.lklsakklaklvlvvsllslllll 381
                   + p yl +q +l  ++ +l t ++  +++ +G+ lgG++  k +kl+ + l+   +v+ ++ l+  +
  CTQ30201.1 249 LSWFPSYLVQQHHLDIKQMSLTT-MIPWIVGFVGLALGGYISDKiFKLTGRLLLSRKIVLVVCLLMAAI 316
                 ****************9999876.666667789*********874677777666544444443333333 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0035
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 460 lllflillflvsflgalgrvpallvilRcVkkedksfalGlqlllirllgliPgPiifGaiiDst 524
                 +++ ++l+++ +f++ ++      +i  +V+k+    a G++ l+ ++ + i gPi+ G+i+ st
  CTQ30201.1 327 VVPAVLLMSVSIFFLYVTGAIYWAIIQDVVHKSRVGGASGFIHLIGSV-SGIVGPIVTGYIVQST 390
                 567778888888888888877777777778888888999999999998.99**********9987 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7  32.5   7.7e-06     0.028       9     362 ..      24     411 ..      22     412 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.7e-06
       MFS_4   9 RFsytpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlr..llagllatvllllamaltesfaaflliRflaGvasAvvlvfgssl 105
                 R ++   +P++ +++ l++ q g++    + GY v  ++   a  +  + l+  l +gl++ +      a++++f  +l++R+l G+a + +   + ++
  CTQ30201.1  24 RVALSITVPMIEKDLALNAEQFGIIFGSFFFGYAVFNFIGGLAVDKFGATLVmgLAVGLWSLFCG--LTAVATGFYSMLVLRVLFGMAEGPICASANKM 120
                 77788899*************************76555444444444444432266666655544..4567899*******************999999 PP

       MFS_4 106 vlahaaaarrervgallfaGvGlGiavsgllv.llllqlglsassl.Wlalavlsavllllvalllpraalreasaaaea................aka 186
                 +     ++++++  ++l aG  lG av+g +v +l+l++g+  +++  +a++++ +++   +a++ p+++++ ++++++                 ++a
  CTQ30201.1 121 INGWFPKKQAATAVGFLSAGSPLGGAVAGPIVgYLALAFGWRPAFMiIFAIGIVWMIAWFFIAANSPEKHKKVSQEELKLinkmkeeevaletienQTA 219
                 99999999999999************9998874678889998888774455555555555555555544444444433321000000000000000222 PP

       MFS_4 187 eqkslpl...lalllaYglaGfGYiita......tFlvaiardg.aggalleallWllvGlaaivgvlvwlrvakrsgl.....rralaaallieavgv 270
                 ++    l   ++l+ a+ ++   Yi+         +lv+  +    + +l +   W++  ++ ++g +++ ++ k +g      + +l++ ll+ a++v
  CTQ30201.1 220 HSLGYYLkqpIILVTAFAFFCYNYILFFflswfpSYLVQQHHLDiKQMSLTTMIPWIVGFVGLALGGYISDKIFKLTGRlllsrKIVLVVCLLMAAICV 318
                 2222222222456778889999999864222222455555544435566666777888889************99988522222567899999999999 PP

       MFS_4 271 llsllspsplglivssvllGltflaitalvlqlarelappat..rrllglmTasfgigQilGpllasllaeatgslalallvaaaalvlaaliv 362
                  l+    s+ +++v  + +  +fl +t     ++ + + ++     + g++ ++  +  i+Gp++++ + + tg++++a ++a+ +++l+al+v
  CTQ30201.1 319 GLAGTVSSV-VPAVLLMSVSIFFLYVTGAIYWAIIQDVVHKSrvGGASGFIHLIGSVSGIVGPIVTGYIVQSTGKFDSAFVLAGTIAALGALLV 411
                 776554444.444444555667888887776666666666653567889999999999********************************9987 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.8       3.7   1.3e+04      17      35 ..      78      96 ..      75     104 .. 0.62
   2 ?   11.4   0.0     8e-05      0.29      11      65 ..     151     206 ..     142     230 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.7
     DUF4381 17 papGwwlllaalllllllv 35
                +a+G w l  +l +++  +
  CTQ30201.1 78 LAVGLWSLFCGLTAVATGF 96
                6888888886655544433 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 8e-05
     DUF4381  11 pvswwPpapGwwlllaalllllllvlalwllrrrkrn...rreAlreLaalradeada 65 
                  v++  +a Gw    +++++++++++++w +   + +   ++  ++eL+ ++  + ++
  CTQ30201.1 151 IVGYLALAFGWRPAFMIIFAIGIVWMIAWFFIAANSPekhKKVSQEELKLIN--KMKE 206
                 578999****999997777788888888877755555444555666666665..2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1487  (0.0829383); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.42
# Mc/sec: 3026.20
//
Query:       CTQ30202.1  [L=310]
Description: putative Fe-S oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-17   62.1   0.0    8.2e-17   61.0   0.0    1.6  1  Radical_SAM_C  Radical_SAM C-terminal domain
    1.5e-15   57.9   0.0    2.4e-15   57.3   0.0    1.4  1  Radical_SAM    Radical SAM superfamily
  ------ inclusion threshold ------
       0.05   13.8   0.0       0.13   12.5   0.0    1.7  1  zf-4CXXC_R1    Zinc-finger domain of monoamine-oxidase A repr


Domain annotation for each model (and alignments):
>> Radical_SAM_C  Radical_SAM C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   1.4e-20   8.2e-17       1      75 [.     208     283 ..     208     291 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 1.4e-20
  Radical_SAM_C   1 pdgvKlypllvikgTeLaelyksgeykplsleeyvdlvadilellppdirvhRltgdipkelliagpwh.knlrel 75 
                    +dg+Kl+pl+++kg+ +a+ +++g+   ++le y+ ++ ++++++pp++  hR+   + +++l+a+ w+ + ++ +
     CTQ30202.1 208 VDGIKLHPLHIVKGSIMAKAWQAGRLDGIELEAYTVTAGEMIRHTPPEVIYHRISASARRPTLLAPLWCeNRWTGM 283
                    69*******************************************************************7777666 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0     4e-19   2.4e-15       9     165 ..      43     201 ..      16     203 .. 0.92

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 4e-19
                  S--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEEECSSCHG...HHHHHHHHHTT.. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx.. RF
  Radical_SAM   9 lrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritvetngtlpd...eeklerllelg.. 101
                  ++C+fC++ +     + ++++s+ e l++  +l +++ ++++  +    +  ++ ++l  ++++  v+  +i+  + gt+pd     +l++l e++  
   CTQ30202.1  43 GGCTFCNVASF--ADEAQQHRSIAEQLAHQAQL-VNRAKRYLAYFQAYTSTFAEVQVLRSMYRQA-VSAANIVGLCVGTRPDcvpQAVLDLLSEYHqq 136
                  56*******97..99999999999999999999.7877*************9*999999999998.6******************9999999999999 PP

                  ..-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHH CS
                  ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM 102 ..vdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGendeeleelle 165
                      +++lgl++a+d+ +l ++nrgh+f  + ++ +++re+g+k++ + ivglpGe+  +  ++le
   CTQ30202.1 137 gyEVWLELGLQTAHDK-TLHRINRGHDFACYQRTARLARERGLKVCAHLIVGLPGESQGHCLQTLE 201
                  9***************.777777*********************************9988887776 PP

>> zf-4CXXC_R1  Zinc-finger domain of monoamine-oxidase A repressor R1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.2e-05      0.13      40      87 ..      14      71 ..       4      80 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
  zf-4CXXC_R1 40 lknRygeeveevaakkeWvCPkCrg........iCncslcrk..kkglaptgqlikka 87
                 l+ Ryge+v++ + +  ++CP+  g        +Cn +      ++ ++  +ql+++a
   CTQ30202.1 14 LMRRYGEKVHKLTLHGGFSCPNRDGtlgrggctFCNVASFADeaQQHRSIAEQLAHQA 71
                 889*******************988889888888886544331233444455666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2303.76
//
Query:       CTQ30203.1  [L=104]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 813.25
//
Query:       CTQ30204.1  [L=1486]
Description: glutamate synthase, large subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.5e-176  586.5   0.0   3.3e-176  586.1   0.0    1.2  1  GATase_2         Glutamine amidotransferases class-II
   5.4e-158  525.9   0.0   9.8e-158  525.1   0.0    1.4  2  Glu_synthase     Conserved region in glutamate synthase
     5e-105  351.0   0.1     1e-104  350.0   0.0    1.5  2  Glu_syn_central  Glutamate synthase central domain
    4.3e-75  251.5   5.7    8.6e-75  250.5   5.7    1.5  1  GXGXG            GXGXG motif
    1.9e-05   23.8   0.6    0.00011   21.4   0.3    2.0  2  FMN_dh           FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> GATase_2  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  586.1   0.0  9.2e-180  3.3e-176       1     420 []      12     425 ..      12     425 .. 0.99

  Alignments for each domain:
  == domain 1  score: 586.1 bits;  conditional E-value: 9.2e-180
                 -EEEEEE-SSS--BSHHHHHHHHHHHHGGGGS-B-TTSSSBSEEEEEEE--HHHHHHHHHHTT-----GGG-EEEEEEE-SSHHHHHHHHHHHHHHHHH CS
    GATase_2   1 CGvgfiaelkgkkshkivekalealenleHRGavgadektGDGaGillqiPdeflrkeakekgielpeageyavgmlflpkdeekaeeakkileeivee 99 
                 CG+g+ia+++g++shk+v++a++al++++HRGa+ ad ktGDG+G+llq+Pd+f+r +a+e+g++l++  +yavgmlfl+kd+e a++a++i+ee+++ 
  CTQ30204.1  12 CGFGLIAHIEGEPSHKVVRTAIHALARMQHRGAILADGKTGDGCGLLLQKPDRFFRIVAEERGWRLAK--NYAVGMLFLNKDPELAKAARRIVEEELQL 108
                 ******************************************************************77..***************************** PP

                 TT-EEEEEEE--B-GGGS-HHHHHH--EEEEEEEE-TT---HHHHHHHHHHHHHHHGGG.....-BTTBEEEEEESSEEEEEESS-GGGHHHHBHGGGS CS
    GATase_2 100 eglevlgwRevpvdksvlgeaakesePsieqvfvekkedlseeelerklyviRkriekeiakkkaekefYicslssrtivYkglltseqlkefykdlkd 198
                 e+l+++gwR+vp+++ vlge a++s P+ieq+fv+++++++ +++er+l+++R+riek+++   ++k+fY+csls+ + +Ykgl+++++l +fy dl+d
  CTQ30204.1 109 ETLSIVGWRDVPTNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIARRRIEKRLQ---EDKDFYVCSLSNLVNIYKGLCMPADLPRFYLDLAD 204
                 ***********************************************************87...89********************************* PP

                 TT--BSEEEEEE---SSSS--GGGSSS-SSEEEEE--TTHHHHHHHHHHHCTT--BT-HH.HHHTC--S--TTS-HHHHHHHHHHHHHHTT--HHHHHH CS
    GATase_2 199 eelesalalvHsRfstntfPsWelaqPlRllaHnGEintlrGnknwmkareaelksellgdelekllPivneegsDsasldnvlellvlsgrslaealm 297
                  +lesa++l+H+Rfstnt+P+W+laqP+R+laHnGEint++Gn++w++ar+ +++++l+  +l++ +P+vne+gsDs+s+dn+lell+++g+++++a++
  CTQ30204.1 205 LRLESAICLFHQRFSTNTVPRWPLAQPFRYLAHNGEINTITGNRQWARARTYKFQTPLIP-DLHDAAPFVNETGSDSSSMDNMLELLLAGGMDIVRAMR 302
                 ***********************************************************8.9************************************* PP

                 HHS----TT-GGGTHHHHHHHHHHTTT-----SSEEEEEE-SSEEEEEE-TT--S--EEEEETT--EEEESSTTSS---GGGEEEEEE--TT-EEEEET CS
    GATase_2 298 lliPeawennksldkekkafyeyasalmepWDGPalivftdGkvvgavLDRnGLRPaRylvtkddlvvlasEvGvldleeeevvekgrlqPGrmllvdl 396
                 ll+P+aw+nn+++d+e+++f++++s++mepWDGPa iv++dG++++++LDRnGLRPaRy++tkd+l+++asEvG++d++++evvekgr++PG+++++d+
  CTQ30204.1 303 LLVPPAWQNNPDMDPELRSFFDFNSMHMEPWDGPAGIVMSDGRYAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVGPGELMVIDT 401
                 *************************************************************************************************** PP

                 TTTEEEEHHHHHHHHHTTS-HHHH CS
    GATase_2 397 eegriledeeikkkiaskkpykew 420
                 + gril++ e +++++s++pykew
  CTQ30204.1 402 RAGRILHSAETDDDLKSRHPYKEW 425
                 ***********************9 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   0.0       2.2   7.9e+03     253     280 ..     625     652 ..     621     670 .. 0.83
   2 !  525.1   0.0  2.7e-161  9.8e-158       1     367 [.     793    1156 ..     793    1157 .. 0.99

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 2.2
                   --HHHHHHHHHHHHHHTT-GGG-EEEEE CS
  Glu_synthase 253 lPlelalaevdqtlkeeglrdrvsliad 280
                   +P  +a+ +++++l+++ lr   ++i++
    CTQ30204.1 625 VPAPMAVGAIQTRLVDKSLRCDANIIVE 652
                   6888999999999999999999888875 PP

  == domain 2  score: 525.1 bits;  conditional E-value: 2.7e-161
                    -SS-HHHHHHHHHHHHH---HHHHHHHHHHHTS.-S-SGGGGEEE--SS--.--GGGS--HHHHHTTEE---B-TTTS-HHHHHHHHHHHHHHT- CS
  Glu_synthase    1 krneievikllqkavqveskesidkyrekleerevlkakrdlleldaaeealikleevepalkikkriltsamSyGalseeahealakamnrlgt 95  
                    ++++++v ++lq+avq+++++++++y++ ++er ++ ++rdll+l+  e+a i+++evepa+++ kr+ t+amS+Gals eahe+la+amn++g+
    CTQ30204.1  793 HAYNPDVVRTLQQAVQSGEYNDYQQYAKLVNER-PAATLRDLLALNPGEDA-ISIDEVEPAKELFKRFDTAAMSIGALSPEAHESLAEAMNSIGG 885 
                    678999***************************.*****************.89***************************************** PP

                    B-EETTS---GGGGS-----SEEEE-TT-TT--HHHHHH-SEEEEE---TTSTTS--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHH CS
  Glu_synthase   96 ksntGEGGedeerlktakdvaikQvasgrFGvteeyLnnakaleikiaQGakpgeGgqlpgeKvseeiakiRkikpgvdliSPaphhdiysiedl 190 
                    +sn+GEGGed++r+ t+k  +ikQvasgrFGvt+ yL+na+ ++ik+aQGakpgeGgqlpg+Kv+++iak+R + pgv+liSP+phhdiysiedl
    CTQ30204.1  886 FSNSGEGGEDPARYGTNKVSRIKQVASGRFGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHHDIYSIEDL 980 
                    *********************************************************************************************** PP

                    HHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEEHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--S CS
  Glu_synthase  191 aqliedLkevnkeakvsvKlvaeagvetiaagvakanadiilidGleGGTGAspkssikhaGlPlelalaevdqtlkeeglrdrvsliadGglkt 285 
                    aqli+dLk+vn++a++svKlv+e gv+tia+gvaka ad+i+i G++GGTGAsp ss+k+aG+P+el+l+e++q+l+++glr++++l++dGglkt
    CTQ30204.1  981 AQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGTGASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKT 1075
                    *********************************************************************************************** PP

                    HHHHHHHHHHT-SEEE-SHHHHHHTT--S---GGGT--TTSSS---HHHH..TT----HHHHHHHHHHHHHHHHHHHHHHT- CS
  Glu_synthase  286 gadvvkalalGAdavgigtaalialgCimarvChtntCpvGvatqdpeLrkrlkveekaervvnyikalaeevrellaalgi 367 
                    g d++ka++lGA+++g+gt++++algC+++r+Ch+n+C++Gvatqd++Lr ++++++ + +v+ny++++a+e rel+a+lg+
    CTQ30204.1 1076 GLDIIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLR-KNHYHGLPFKVTNYFEFIARETRELMAQLGV 1156
                    **************************************************.99***************************97 PP

>> Glu_syn_central  Glutamate synthase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.0   0.0  2.8e-108    1e-104       2     279 .]     457     737 ..     456     737 .. 0.96
   2 ?   -3.9   0.0         2   7.3e+03     178     198 ..    1052    1072 ..    1046    1078 .. 0.85

  Alignments for each domain:
  == domain 1  score: 350.0 bits;  conditional E-value: 2.8e-108
                      HHHHTT--HHHHHHTHHHHHHHSS--EE-S---S--TTT-SS---GGGGEEE----SSS----TTTTGGG-B--EEES----SSS--GGGG-EE CS
  Glu_syn_central   2 rqkafgyteedlelllepmakegkeaigsmGdDtplavLsekprllydYFkqlfAqVTNPpiDpiREelvmsletllGkegnlleeeeeqakrl 95 
                       qk f+y+ e+l+ +l+ + ++g+ea+gsmGdDtp+avLs++pr +ydYF+q+fAqVTNPpiDp+RE++vmsl+t +G+e n++ e e qa+rl
       CTQ30204.1 457 YQKQFNYSAEELDSVLRVLGENGQEAVGSMGDDTPFAVLSSQPRIIYDYFRQQFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRL 550
                      5899****************************************************************************************** PP

                      EESSSB--HHHHHHH....HHSSS-EEEEESEE.....SHHHHHHHHHHHHHHHHHTT-SEEEEESS--STTEEE--HHHHHHHHHHHHHHTT- CS
  Glu_syn_central  96 klesPiLteeeleklkklkekkefkaktlditfeae..aleealerlceeaeeavregaeilvLsDrkvseervpipslLavgavhhhLvrkgl 187
                       ++sPiL  +++++l++++ +++++a +lditf+ +  +l+e++++lc++ae++vr+g+ +lvLsDr++ ++r+p+p+ +avga++++Lv+k+l
       CTQ30204.1 551 SFKSPILLYSDFKQLTTME-EEHYRADVLDITFNPAeaSLSETVKALCDKAEQMVRDGTVLLVLSDRNIAKDRLPVPAPMAVGAIQTRLVDKSL 643
                      ***************8885.569**********877556******************************************************* PP

                      GGG-EEEEEESS--SHHHHHHHHHTT-SEEEEHHHHHHHHHHHTTTS-..----HHHHHHHHHHHHHHHHHHHTT--BHHHHHHS--EEESSB- CS
  Glu_syn_central 188 rtkvslvvesgearevhhfavllgyGadavnPylaletieklveegal..aeeeleknyrkavekGllKimskmGistlqSYkgaqifeavGls 279
                      r++++++ve+++ar+ hhfavllg+Ga+a++Pyla+et++klv+++a+    +++  nyr++++kGl+KimskmGist++SY+++++feavGl+
       CTQ30204.1 644 RCDANIIVETASARDPHHFAVLLGFGATAIYPYLAYETLAKLVDSKAIdkPYRAVMLNYRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLH 737
                      **********************************************9954444555************************************96 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2
                       HHHHHHHTT-GGG-EEEEEES CS
  Glu_syn_central  178 vhhhLvrkglrtkvslvvesg 198 
                        +++Lv++glr+k+ l v+ g
       CTQ30204.1 1052 TQQALVANGLRHKIRLQVDGG 1072
                       5799**********9999866 PP

>> GXGXG  GXGXG motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.5   5.7   2.4e-78   8.6e-75       2     185 ..    1236    1419 ..    1235    1424 .. 0.98

  Alignments for each domain:
  == domain 1  score: 250.5 bits;  conditional E-value: 2.4e-78
                  EE-TT--STTHHHHHHHHHHHTTT---.-EEEEEEEEEE-TTTTTT--TTEEEEEEEEE-STTTTT-ESSEEEEE--TT-SS-GGGSB-S-SSTTTT CS
       GXGXG    2 eirnldrsvgtilsneiakrygeeglpedtikiklkGsaGqslgaflakGltleleGdandyvGkglsgGkivikpskeskfkaeeniivGnvvlyg 98  
                  +irn+drsvg+ ls+ ia+++g++gl+ d i  +++G+aGqs+g+++a G++l+l+GdandyvGkg+ gG + i+p+  s+f+++e  i+Gn++lyg
  CTQ30204.1 1236 DIRNTDRSVGASLSGYIAQTHGDQGLAGDPIVAHFSGTAGQSFGVWNAGGVELHLTGDANDYVGKGMAGGLLAIRPPVGSAFRSHEASIIGNTCLYG 1332
                  79*********************************************************************************************** PP

                  --SEEEEESSB--SSTTTT-SS-EEEESEB-SSTTTT-EEEEEEE-S-B-SSBTTT--EEEEEEE-SSSTHHHHB-TTT-EEEES-S CS
       GXGXG   99 atgGklfirgkageRfavrnsgatavvegvgdhgceYmtGGvvvvLgktgrnfaaGmsgGiayvldedekfekklnkelvelekved 185 
                  atgG+l+++g+ageRfavrnsga+ vveg+gd+gceYmtGG+v vLgktg nf+aGm+gG+ayvlded++f+k++n+elve+ +v++
  CTQ30204.1 1333 ATGGRLYAAGRAGERFAVRNSGAITVVEGIGDNGCEYMTGGIVCVLGKTGVNFGAGMTGGFAYVLDEDGDFRKRVNPELVEVLDVDS 1419
                  *********************************************************************************998875 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.3   2.9e-08   0.00011     265     309 ..    1058    1102 ..    1048    1104 .. 0.87
   2 ?   -0.2   0.0      0.11     4e+02     315     341 ..    1136    1162 ..    1134    1168 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 2.9e-08
                  HHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHH CS
      FMN_dh  265 veavggrievlvDgGirrGsDvlkAlalGAdavllGRpflyglaa 309 
                  ++ ++++i + vDgG ++G D++kA  lGA+  ++G   +++l +
  CTQ30204.1 1058 ANGLRHKIRLQVDGGLKTGLDIIKAAILGAESFGFGTGPMVALGC 1102
                  5556789*****************************999999875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.11
                  HHHHHHHHHHHHHHHHHHHT-SBHHHH CS
      FMN_dh  315 vervleilraelertmallGvksvael 341 
                  v++++e + +e+++ ma+lGvk++ +l
  CTQ30204.1 1136 VTNYFEFIARETRELMAQLGVKRLVDL 1162
                  7889999***************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.44
# Mc/sec: 10056.96
//
Query:       CTQ30205.1  [L=472]
Description: glutamate synthase small chain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-38  129.6   0.4    6.5e-38  129.0   0.4    1.3  1  Fer4_20         Dihydroprymidine dehydrogenase domain II, 4Fe
      2e-29  102.8   5.3    7.9e-24   84.4   2.6    1.9  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    3.3e-11   43.0   0.4    0.00012   21.4   0.0    2.4  2  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    7.7e-11   42.4   3.4    0.00038   21.0   0.2    2.9  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    6.6e-09   35.9   0.1    1.6e-08   34.7   0.1    1.6  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    1.4e-06   27.9   0.1    2.5e-06   27.0   0.1    1.3  1  FAD_binding_3   FAD binding domain
    3.3e-06   26.5   0.0    7.3e-06   25.4   0.0    1.5  1  Thi4            Thi4 family
      4e-06   26.4   0.1    1.6e-05   24.4   0.0    1.8  2  FAD_oxidored    FAD dependent oxidoreductase
    8.9e-06   26.1   0.7       0.07   13.6   0.1    2.8  2  NAD_binding_7   Putative NAD(P)-binding
    1.2e-05   24.6   0.8     0.0017   17.5   0.1    2.2  2  FAD_binding_2   FAD binding domain
    2.1e-05   23.4   0.1    4.6e-05   22.3   0.1    1.5  1  HI0933_like     HI0933-like protein
    2.4e-05   23.0   0.1     0.0058   15.1   0.0    2.1  2  FMO-like        Flavin-binding monooxygenase-like
    5.9e-05   22.5   0.0     0.0016   17.8   0.0    2.7  3  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    0.00014   21.6   0.3     0.0025   17.5   0.0    2.3  2  DAO             FAD dependent oxidoreductase
     0.0004   20.5   0.0       0.83    9.7   0.0    2.9  3  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
    0.00088   19.8   0.2          4    8.1   0.0    3.6  4  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
     0.0023   18.0   0.6      0.065   13.2   0.2    2.3  2  NAD_binding_9   FAD-NAD(P)-binding
     0.0035   16.6   0.0        2.9    6.9   0.0    2.7  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
      0.004   16.5   1.4        0.4    9.9   0.0    2.8  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
       0.01   15.4   0.1       0.43   10.1   0.0    2.3  2  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
       0.01   15.9   0.8        1.8    8.6   0.0    2.4  2  AdoHcyase_NAD   S-adenosyl-L-homocysteine hydrolase, NAD bind
      0.012   15.6   0.0      0.024   14.6   0.0    1.5  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
      0.032   14.8   2.6       0.11   13.1   0.1    2.5  2  Fer4_7          4Fe-4S dicluster domain
      0.068   12.4   0.0       0.32   10.2   0.0    2.0  2  Amino_oxidase   Flavin containing amine oxidoreductase
       0.11   11.6   0.2       0.18   10.9   0.2    1.3  1  GIDA            Glucose inhibited division protein A
       0.12   11.4   0.4       0.18   10.8   0.4    1.2  1  Lycopene_cycl   Lycopene cyclase protein
       0.14   12.0   0.1       0.27   11.1   0.1    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
       0.15   12.5   0.1        1.9    9.0   0.0    2.2  2  XdhC_C          XdhC Rossmann domain


Domain annotation for each model (and alignments):
>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.4     1e-40   6.5e-38       2     112 ..      25     134 ..      24     135 .. 0.96

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 1e-40
                 TTS-S-SB----HHHHHHHHTT----TT-HHHHCSTT---HHHHHHHHHTT-HHHHHHHHHHH-S-HHHHHHHS-GGGTGCCS-GGGTTB.----HHHH CS
     Fer4_20   2 aknfkevalglteeealeeAsRClqCkkapcvkgCPveidipefikkiaegnleeaakiiketnslpavcgrvCpqeelCegaCvlekkgkepvaigkl 100
                 + +f e+++ ++e +a+++A+RCl+C +++c+++CPv++ ip+++k  +eg++ eaa++ ++tn+lp+vcgrvCpq++lCeg+C+l+ ++  +v+ig++
  CTQ30205.1  25 KIEFVEIYEPFSEGQAKAQADRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDRLCEGSCTLN-DEFGAVTIGNI 122
                 56899*********************************************************************************6.7779******* PP

                 HHHHHHHHHHT- CS
     Fer4_20 101 erfvadaareeg 112
                 er++ d+a e+g
  CTQ30205.1 123 ERYINDKAFEMG 134
                 *******99886 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   3.4e-09   2.2e-06     131     237 ..     126     241 ..     115     254 .. 0.75
   2 !   84.4   2.6   1.2e-26   7.9e-24       2     294 .]     148     459 ..     147     459 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 3.4e-09
                  HHHHHHCCSS-T.........SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.......TTS-..HHHHHHHHHHHHHTTEEEEESCEEEEEE CS
                  xxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 131 dsaealklkllp.........krivvvGgGyiGvElAaalaklgkevtlveardrll.......rald..kelsaaleealekeGvevklgtsvkeid 210
                   +++a++  ++p         k ++++G+G+ G+ +A +l++ g+++++ ++ +++        +a++  ke+  + +e ++ +G+e+kl+t+v +  
   CTQ30205.1 126 INDKAFEMGWRPdlsdvkptgKTVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGglltfgiPAFKleKEVMTRRREIFTGMGIEFKLNTEVGRD- 222
                  55667777777777778888899999***********999999999999999999877755556444344889999999999999999999999332. PP

                  ETTEEEEEEETTSCEEEESEEEE-S-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 211 gngeklevvledgeeidadlvvvavGv 237
                         v+l+d  + ++d v+++vG 
   CTQ30205.1 223 -------VQLDDLLK-EYDAVFLGVGT 241
                  .......34444443.56666666665 PP

  == domain 2  score: 84.4 bits;  conditional E-value: 1.2e-26
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH..HHHHCHHHHCCCCHCCT.CEEEEESCEEEEETEEECTCEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias..evvkklnqgielllgee.vvkidpgkkkvklekkkegdee 96 
                   v++iG+GpAGla+a  l ++g+k +++   + ++  g ll+  + +++ ++e+++  +       +i + +g e +++ + g+ +v+l ++      
   CTQ30205.1 148 TVAIIGAGPAGLACADVLTRNGVKAVVF---DRHPEIGGLLTFGIPAFKLEKEVMTrrR-------EIFTGMGIEfKLNTEVGR-DVQLDDLL----- 229
                  69**************************...5567778888888888888888777531.......466666644455555566.88884444..... PP

                  EEEESEEEE---E.EE-BC.....TCTTC.........TTBEECCSECHHHHHHCCSS-T.......SEEEEES-SHHHHHHHHH.HHHHT-EEEEEE CS
                  xxxxxxxxxxxxx.xxxxx.....xxxxx........xxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Pyr_redox_2  97 kiaydklvlAtGs.sprdl.....gipGv........aenvgklvrtldsaealklkllp.......krivvvGgGyiGvElAaa.laklgkevtlve 172
                    +yd+++l  G  ++ +      + pGv        a        + ++  ++ +   +       kr+vv GgG +++++  +  ++ +++v   +
   CTQ30205.1 230 -KEYDAVFLGVGTyQSMRGgldneDAPGVydalpfliA--------NTKQIMGFGETADEpyvsmegKRVVVLGGGDTAMDCVRTsVRQNAAHVICAY 318
                  .48*********64555553334444555544444431........333333333333335666666*****************95555588899999 PP

                  SSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE................EEEEEETTSCE...............EEESEEEE-S-EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxx...............xxxxxxxxxxxxxx RF
  Pyr_redox_2 173 ardrllraldkelsaaleealekeGvevklgtsvkeidgnge................klevvledgee...............idadlvvvavGvrp 239
                  +rd+         s++  +  ++eGve++++ ++  ++ n +                +                         ++ad vv+a G+rp
   CTQ30205.1 319 RRDEEN----MPGSKREVKNAREEGVEFQFNVQPLGVEVNANgkvcgvkmartemgqpD---------AkgrrraeivpgsehvVPADAVVMAFGFRP 403
                  999886....33556666777888**********9555555554996655544444440.........1555566666666666************** PP

                  S-HHCSHCCT-EEEETTEEE--TTS....BESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 240 stelleeklglelderggivvdefl....rtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                   +     k  +eld++g+i   e +    +t+ p+i+a GD++   +g +l+++A+++G
   CTQ30205.1 404 HSMEWLAKHSVELDSQGRIIAPEGSenafQTSNPKIFAGGDIV---RGSDLVVTAIAEG 459
                  874433*************88777767779*************...**********998 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.2   8.2e-07   0.00052       2      33 ..     151     182 ..     150     187 .. 0.87
   2 !   21.4   0.0   1.9e-07   0.00012     159     305 .]     282     443 ..     263     443 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 8.2e-07
  Pyr_redox_3   2 IiGaGPaGlaaaielkkagledylilEkg.nig 33 
                  IiGaGPaGla+a  l ++g+ + ++ +++ +ig
   CTQ30205.1 151 IIGAGPAGLACADVLTRNGV-KAVVFDRHpEIG 182
                  9*******************.578999986665 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 1.9e-07
  Pyr_redox_3 159 fhkyagqkvvViGgknSavDaAlelvrk.gaeVtvvtrgseiekeesdpsyslkpdienrleelvke...ekikvlfnaevkeikekeeeykvktedg 252
                  +  ++g++vvV Gg+++a+D     vr+  a+V  ++r++e  ++    + ++k   e+ +e   +    + ++v  n +v  +k   +e+    ++g
   CTQ30205.1 282 YVSMEGKRVVVLGGGDTAMDCVRTSVRQnAAHVICAYRRDE--ENMPGSKREVKNAREEGVEFQFNVqplG-VEVNANGKVCGVKMARTEMGQPDAKG 376
                  557899***************99999883578999999985..4445678899999999887655545543.66666666666666555554444444 PP

  Pyr_redox_3 253 kkvev..........kddvvlatGykpd.lsflkkslfeldedgr...pvlteeteetnvpglflaG 305
                  ++  +           d vv+a G++p+ ++ l+k+ +eld++gr   p+  e+  +t  p +f  G
   CTQ30205.1 377 RRRAEivpgsehvvpADAVVMAFGFRPHsMEWLAKHSVELDSQGRiiaPEGSENAFQTSNPKIFAGG 443
                  3332235555555658999999*****85688*********99963336677788899999998765 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.3   6.6e-07   0.00042       2      65 ..     149     221 ..     148     230 .. 0.76
   2 !   21.0   0.2   5.9e-07   0.00038       1      79 [.     289     365 ..     289     370 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 6.6e-07
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.......T..TSSHHHHHHHHHHHHHTTEEEECSEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll.......r..llDeeaskilqeklekngievllntkvee 65 
                 v+++G+G  gl +A +l++ g k  v++r++++        +  +l++e+ ++ +e ++ +gie+ lnt+v +
  CTQ30205.1 149 VAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGglltfgiPafKLEKEVMTRRREIFTGMGIEFKLNTEVGR 221
                 89******************************99552221212234566666666666777*******99865 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 5.9e-07
                 EEEEECSSHHHHHHHHHHHH.TTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EEEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalae.lgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedg.vesvklk 79 
                 +vvv+GgG++++++  +  +  +++V +  r+d+         sk+  ++ +++g+e+ +n ++  +e +++g v +vk++
  CTQ30205.1 289 RVVVLGGGDTAMDCVRTSVRqNAAHVICAYRRDEEN----MPGSKREVKNAREEGVEFQFNVQPLGVEVNANGkVCGVKMA 365
                 79*************998553779********9987....56788999*************************99999985 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.1   2.4e-11   1.6e-08       1      35 [.     151     185 ..     151     193 .. 0.96

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.4e-11
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGra 35 
                    I+GaG +Gl++A  L+++g++ +++++++ +GG +
     CTQ30205.1 151 IIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLL 185
                    9********************************65 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.1   3.9e-09   2.5e-06       3      34 ..     148     179 ..     147     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 3.9e-09
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    +V+I+GaGpaGl  a +L++ Gv+ v+ +++ 
     CTQ30205.1 148 TVAIIGAGPAGLACADVLTRNGVKAVVFDRHP 179
                    699***************************96 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.1e-08   7.3e-06      19      83 ..     148     212 ..     138     223 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.1e-08
                 EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTBS..EEEEETTTHHHHHHTT-- CS
        Thi4  19 DvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlfs..aivvrkpakelLdelgik 83 
                  v+i+GaG++GL++a +l+++ ++k ++++r+  +GG    G   f+  + v+ +  +e+   +gi+
  CTQ30205.1 148 TVAIIGAGPAGLACADVLTRN-GVKAVVFDRHPEIGGLLTFGIPAFKleKEVMTR-RREIFTGMGIE 212
                 699******************.***************988887777522444443.35555666665 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.6e-08   1.6e-05       2      63 ..     149     213 ..     148     233 .. 0.82
   2 ?   -0.5   0.0      0.95   6.1e+02      98     131 ..     336     371 ..     290     390 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.6e-08
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaee...qvvtgiaref 63 
                   v ++G+gpaG+a+A    r+G k ++ ++++ +GGllt g+ a  ++++  +   ++ tg+  ef
    CTQ30205.1 149 VAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTrrrEIFTGMGIEF 213
                   89************************************999766655444445556777766666 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.95
  FAD_oxidored  98 aeagvtvllntrlveveke.gkriesvtveske.gr 131
                   +e+gv+  +n ++ +ve++ ++++ +v++++ e g+
    CTQ30205.1 336 REEGVEFQFNVQPLGVEVNaNGKVCGVKMARTEmGQ 371
                   677888888889988888645678888887766554 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0016         1       4      39 ..     143     178 ..     142     238 .. 0.81
   2 !   13.6   0.1   0.00011      0.07       3      49 ..     283     326 ..     282     468 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0016
  NAD_binding_7   4 dlkgkkvlvvGgGevAarkvrklleagakvtvvape 39 
                    + +gk+v ++G+G+ ++  +  l ++g k +v +  
     CTQ30205.1 143 KPTGKTVAIIGAGPAGLACADVLTRNGVKAVVFDRH 178
                    789***************************999876 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 0.00011
  NAD_binding_7   3 ldlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvk 49 
                    + ++gk+v+v GgG+ A+  vr+ ++++a  ++ a +     ee++ 
     CTQ30205.1 283 VSMEGKRVVVLGGGDTAMDCVRTSVRQNAAHVICAYR---RDEENMP 326
                    789***********************99888887777...3333232 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   2.6e-06    0.0017       2      37 ..     149     184 ..     148     212 .. 0.94
   2 !    5.8   0.1    0.0099       6.3     148     213 ..     332     415 ..     285     432 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.6e-06
                    EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37 
                    v +iG+G AGLa+A  ++++G k +v +  +e gg 
     CTQ30205.1 149 VAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGL 184
                    89***************************9999985 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0099
                    HHHHHTCTEEEEESEEEEEEEEC.TTEEEEEEEEET...............TTTCEEEEEESEEEE-----GG........... CS
  FAD_binding_2 148 vesarkagvdfqerteadeLive.dgrvtGavvenp...............esgrevrirakavvlatgGfgr..allkellga 213
                    v++ar+ gv+fq++ + + + v+ +g+v G+ ++                   g+e+ + a+avv+a g  ++  ++l ++  +
     CTQ30205.1 332 VKNAREEGVEFQFNVQPLGVEVNaNGKVCGVKMARTemgqpdakgrrraeiVPGSEHVVPADAVVMAFGFRPHsmEWLAKHSVE 415
                    78899999************997466******9988999***99998888888888899999*****99999988777776555 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   7.1e-08   4.6e-05       2      36 ..     148     182 ..     147     187 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 7.1e-08
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36 
                  +v++iG+G+AGl +A  + ++g + +++++ +++g
   CTQ30205.1 148 TVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIG 182
                  69****************************99998 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.1e-06    0.0058       2      42 ..     147     187 ..     146     195 .. 0.96
   2 !    5.7   0.0    0.0062         4     181     214 ..     285     319 ..     263     326 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 9.1e-06
    FMO-like   2 kkvaviGaGvsGlasikccleegleptcfersddiGGlwrf 42 
                 k va+iGaG +Gla       +g++ + f+r  +iGGl  f
  CTQ30205.1 147 KTVAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLLTF 187
                 89************************************988 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0062
    FMO-like 181 fkgkrvlviGlGnsggd.iavelsrtaeqvllstr 214
                 ++gkrv+v+G G+++ d + + + ++a++v+ + r
  CTQ30205.1 285 MEGKRVVVLGGGDTAMDcVRTSVRQNAAHVICAYR 319
                 79***************445788899999988766 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.5e-06    0.0016      21      70 ..     133     180 ..     117     199 .. 0.82
   2 ?   -1.4   0.0         2   1.3e+03      81      99 ..     221     239 ..     212     252 .. 0.77
   3 ?    0.8   0.0      0.41   2.7e+02      28      70 ..     279     322 ..     266     341 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.5e-06
                   TCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHH CS
  2-Hacid_dh_C  21 gewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskk 70 
                     w  + +l+  + +gktv+iiG+G  G a a++l+  g+k +++dr+++
    CTQ30205.1 133 MGW--RPDLSDVKPTGKTVAIIGAGPAGLACADVLTRNGVKAVVFDRHPE 180
                   334..788888999*********************************976 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2
                   EECSHHHHHHH-SEEEE-S CS
  2-Hacid_dh_C  81 elvsleellaesDivslhl 99 
                   + v+l++ll+e D v+l +
    CTQ30205.1 221 RDVQLDDLLKEYDAVFLGV 239
                   6689**********99866 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.41
                   CGSBS-GTTSEEEEES-SHHHHHHHHHHH.HTT-EEEEESSSHH CS
  2-Hacid_dh_C  28 allgkelsgktvGiiGlGrIGqavakrlk.afgmkviaydrskk 70 
                   + +  +++gk+v ++G G+ +    ++   +  ++vi+  r+ +
    CTQ30205.1 279 DEPYVSMEGKRVVVLGGGDTAMDCVRTSVrQNAAHVICAYRRDE 322
                   55677899**********99988777655255557776655544 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.9e-06    0.0025       2      33 ..     149     182 ..     148     233 .. 0.94
   2 ?    2.0   0.0      0.19   1.2e+02     154     201 ..     333     400 ..     329     433 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.9e-06
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdiag 33 
                 v+iiG+G +Gl++A  L+r g   +++++++++g
  CTQ30205.1 149 VAIIGAGPAGLACADVLTRNGvkAVVFDRHPEIG 182
                 9******************99*********9998 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.19
                 HHHHHTT-EEEESECEEEEEEEE.TCEEEEE.EECT.EEEE.................EEEEEEE--G CS
         DAO 154 raaealGveilegtevtgleeed.gkvwgve.rttp.gend.................aadavVnaaG 201
                 + a++ Gve+ ++ +  g+e +  gkv gv+   t+ g+ d                  adavV+a G
  CTQ30205.1 333 KNAREEGVEFQFNVQPLGVEVNAnGKVCGVKmARTEmGQPDakgrrraeivpgsehvvPADAVVMAFG 400
                 569999*******9999997644599999999444445433345555666667777776688888877 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0013      0.83      11      45 ..     145     178 ..     139     188 .. 0.87
   2 ?   -1.3   0.0       3.2     2e+03      67      84 ..     223     240 ..     196     246 .. 0.76
   3 !    7.1   0.0    0.0081       5.2       8      46 ..     283     321 ..     276     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0013
                   TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESS CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRt 45 
                   ++k+v +iGaG  +   a  L ++gvk  vv+ R 
    CTQ30205.1 145 TGKTVAIIGAGPAGLACADVLTRNGVK-AVVFDRH 178
                   5799***********************.5677776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.2
                   CGHHHHHHT-SEEEE-SS CS
  Shikimate_DH  67 eelkellaeadvvisata 84 
                    +l++ll+e+d v+  ++
    CTQ30205.1 223 VQLDDLLKEYDAVFLGVG 240
                   57889999***9998766 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0081
                   S..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSH CS
  Shikimate_DH   8 eslkekkvlliGaGemaelvakhLlakgvkkvvvaNRtl 46 
                    s+++k+v+++G G +a   ++  +++++ +v+ a R  
    CTQ30205.1 283 VSMEGKRVVVLGGGDTAMDCVRTSVRQNAAHVICAYRRD 321
                   57899*************************999998865 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0063         4       1      37 [.     148     180 ..     148     205 .. 0.87
   2 ?   -1.5   0.0         6   3.9e+03      54      72 ..     224     242 ..     211     244 .. 0.74
   3 ?    7.1   0.0     0.013         8       1      47 [.     289     333 ..     289     360 .. 0.85
   4 ?   -1.8   0.0       7.8     5e+03      36      69 ..     425     456 ..     407     458 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0063
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCC CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpe 37 
                    +++iiGaG  g a a  l+++g    + vv  +r+pe
     CTQ30205.1 148 TVAIIGAGPAGLACADVLTRNG---VKAVVF-DRHPE 180
                    58********************...555535.78876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 6
                    CHHHHHHH-SEEEE-S-HH CS
  F420_oxidored  54 dneeaaeeadvvvlavkpe 72 
                    +  ++++e d v+l v ++
     CTQ30205.1 224 QLDDLLKEYDAVFLGVGTY 242
                    447899999*****99765 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.013
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg 47 
                    ++ ++G+G+ +   ++  ++++  + +++ a +r++e +   ++e++
     CTQ30205.1 289 RVVVLGGGDTAMDCVRTSVRQN--AAHVICAYRRDEENMPGSKREVK 333
                    5889*****************9..667777******99877776654 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 7.8
                    CCCHHHHHHHHC-EEECECHHHHHHH-SEEEE-S CS
  F420_oxidored  36 pekaeelaeelgvkvtavdneeaaeeadvvvlav 69 
                    pe  e + ++ ++k++a    + ++ +d vv a+
     CTQ30205.1 425 PEGSENAFQTSNPKIFA--GGDIVRGSDLVVTAI 456
                    66677777777777777..788899999998876 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2    0.0001     0.065       1      37 [.     150     182 ..     150     187 .. 0.86
   2 ?    2.7   0.0      0.17   1.1e+02     129     154 ..     374     400 ..     353     402 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0001
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsep.g 37 
                    ai+GaGp+Gla+++ L ++      ++  +fd+++  g
     CTQ30205.1 150 AIIGAGPAGLACADVLTRN-----GVKAVVFDRHPEiG 182
                    8*****************9.....59999999988734 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.17
  NAD_binding_9 129 eradgq.avlladgaslaadaVvLAlG 154
                     +++++ +++  +++ + adaVv+A G
     CTQ30205.1 374 AKGRRRaEIVPGSEHVVPADAVVMAFG 400
                    4444443788899999*********99 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0045       2.9       5      39 ..     149     181 ..     147     196 .. 0.89
   2 !    6.6   0.0    0.0059       3.8     188     226 ..     284     322 ..     256     335 .. 0.79
   3 ?   -3.2   0.0       5.6   3.6e+03     325     341 ..     386     402 ..     379     409 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0045
  K_oxygenase   5 ligiGiGpsnLsLailleevkkelkalflerqpef 39 
                  +++iG+Gp+ L+ a  l  +   +ka++++r+pe 
   CTQ30205.1 149 VAIIGAGPAGLACADVLTRNG--VKAVVFDRHPEI 181
                  689********9999999888..********9986 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0059
  K_oxygenase 188 llakkriaVvGsGqSaaeifedllrrqkkvelklvtrse 226
                  + ++kr++V G+G +a + ++  +r++++  +  + r e
   CTQ30205.1 284 SMEGKRVVVLGGGDTAMDCVRTSVRQNAAHVICAYRRDE 322
                  7899*****************999998877776666655 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.6
  K_oxygenase 325 eeetlevdavvlATGYr 341
                  +e+++ +davv+A G+r
   CTQ30205.1 386 SEHVVPADAVVMAFGFR 402
                  56677789999998887 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00063       0.4      30      62 ..     148     180 ..     131     186 .. 0.89
   2 ?    4.5   0.3     0.029        19      28      61 ..     287     320 ..     275     467 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00063
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrpa 62 
                  +v +iG+G aGl+ + + ++ g k +v+D  p+
   CTQ30205.1 148 TVAIIGAGPAGLACADVLTRNGVKAVVFDRHPE 180
                  699**************************9876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.029
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrp 61 
                    +v+v+GgG   +  ++t+++ +a  +++  r 
   CTQ30205.1 287 GKRVVVLGGGDTAMDCVRTSVRQNAAHVICAYRR 320
                  5689***************999888766655544 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00067      0.43       4      32 ..     146     174 ..     144     181 .. 0.90
   2 ?    2.8   0.0      0.12        76       2      49 ..     285     340 ..     284     347 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00067
                 TS-EEEES-SHHHHHHHHHHHHTT--EEE CS
        IlvN   4 gkkiaviGyGsqGhaqalnlrdsgldvvv 32 
                 gk++a+iG G  G a a  l  +g++ vv
  CTQ30205.1 146 GKTVAIIGAGPAGLACADVLTRNGVKAVV 174
                 89***********************9887 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.12
                 HHTS-EEEES-SHHHHH.HHHHHHHTT--EEEEE-TT-.......HHHHHHHHTT- CS
        IlvN   2 lkgkkiaviGyGsqGha.qalnlrdsgldvvvglregs.......ksvkkAkeegf 49 
                 ++gk+++v+G G  +     + +r++  +v+ + r+++       + vk+A+eeg+
  CTQ30205.1 285 MEGKRVVVLGGGDTAMDcVRTSVRQNAAHVICAYRRDEenmpgskREVKNAREEGV 340
                 789*********98865156789***********9998555555446666666665 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0028       1.8      17      53 ..     140     176 ..     137     195 .. 0.90
   2 ?    5.2   0.2     0.031        20      19      50 ..     283     315 ..     273     318 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0028
                    H-S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE- CS
  AdoHcyase_NAD  17 tdvllaGkvavvaGyGdvGkGcaaslkglGarvivte 53 
                    +dv  +Gk++ ++G G  G  ca+ l   G + +v +
     CTQ30205.1 140 SDVKPTGKTVAIIGAGPAGLACADVLTRNGVKAVVFD 176
                    588889************************9998865 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.031
                    S--TTSEEEEE--SHHHHHHH.HHHHHCT-EEE CS
  AdoHcyase_NAD  19 vllaGkvavvaGyGdvGkGca.aslkglGarvi 50 
                    v + Gk +vv G Gd    c  +s+++  a+vi
     CTQ30205.1 283 VSMEGKRVVVLGGGDTAMDCVrTSVRQNAAHVI 315
                    5689**************997358999999887 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.7e-05     0.024       2      79 ..     149     241 ..     148     257 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.7e-05
                     EEEE--SHHHHHHHHHHHTTT--EEEE-S-H.............HHHHHHHHHSSBTTTBTT..----TTEEEES-HHHHHTT--EEEE---H CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaenghevrlwvree.............elieeineehenvkyLpg..iklpenlvattdlaealkgadiivlvvPs 79 
                     +a++GaG  G a A vl++ng + +++ r++             +l +e+ +++++     g  +kl++++    +l++ lk+ d ++l v +
      CTQ30205.1 149 VAIIGAGPAGLACADVLTRNGVKAVVFDRHPeigglltfgipafKLEKEVMTRRREIFTGMGieFKLNTEVGRDVQLDDLLKEYDAVFLGVGT 241
                     9**********************9999999999999999999986666666665555444441267778888888888888888888888865 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   0.00017      0.11      29      50 ..      38      61 ..       6      63 .. 0.77
   2 ?    0.8   0.3       1.2   7.6e+02      43      50 ..      93     100 ..      76     116 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00017
      Fer4_7 29 ekveidpekClgCga..CvavCPt 50
                 +++ ++++Cl+Cg+  C+  CP+
  CTQ30205.1 38 GQAKAQADRCLSCGNpyCEWKCPV 61
                5668899****************8 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 1.2
      Fer4_7  43 aCvavCPt 50 
                 +C +vCP 
  CTQ30205.1  93 VCGRVCPQ 100
                 35555554 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0005      0.32       2      29 ..     157     184 ..     156     186 .. 0.95
   2 ?   -1.5   0.0       1.8   1.2e+03     247     262 ..     386     401 ..     344     413 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0005
                    HHHHHHHHHHHTTEEEEEEESSSSSBTT CS
  Amino_oxidase   2 aGLaaArqLlsaGfdVtvlEardrvGGR 29 
                    aGLa+A  L+++G++ +v+   + +GG 
     CTQ30205.1 157 AGLACADVLTRNGVKAVVFDRHPEIGGL 184
                    9**************************5 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.8
                    TSTEEEESEEEE-S-H CS
  Amino_oxidase 247 dgevveaDaVvvTvpl 262
                    + +vv+aDaVv++  +
     CTQ30205.1 386 SEHVVPADAVVMAFGF 401
                    33444*******9766 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00028      0.18       2      28 ..     149     175 ..     148     195 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00028
                 EEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLi 28 
                 v +iG+G AG+++A  + r G+k + +
  CTQ30205.1 149 VAIIGAGPAGLACADVLTRNGVKAVVF 175
                 89*********************9988 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   0.00028      0.18       2      31 ..     149     176 ..     148     183 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00028
  Lycopene_cycl   2 vvviGaGpAglslAarlteakpglkvvlie 31 
                    v++iGaGpAgl+ A  l   + g+k v+ +
     CTQ30205.1 149 VAIIGAGPAGLACADVL--TRNGVKAVVFD 176
                    89***************..66666666665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00042      0.27       1      33 [.     148     180 ..     148     199 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00042
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HH CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdisee 33 
                 +va+iGaG  G   a v+ ++g++ v++d+++e
  CTQ30205.1 148 TVAIIGAGPAGLACADVLTRNGVKAVVFDRHPE 180
                 69***************************9987 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0029       1.9       1      33 [.     149     181 ..     149     230 .. 0.86
   2 ?    1.4   0.0      0.69   4.4e+02       1      42 [.     290     328 ..     290     419 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0029
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGG CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreef 33 
                 ++i+Gag+ + a+a+++ + g++ +v+d  +e+
  CTQ30205.1 149 VAIIGAGPAGLACADVLTRNGVKAVVFDRHPEI 181
                 589*************************99975 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.69
                 EEEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT- CS
      XdhC_C   1 lvifGaghvaqalarlaaalgfrvtvvdpreefatkerfpea 42 
                 +v++G+g+ a  ++r   + +   +++  r++   +e++p+ 
  CTQ30205.1 290 VVVLGGGDTAMDCVRTSVRQNAAHVICAYRRD---EENMPGS 328
                 6899**********999999988888888875...3444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 3506.39
//
Query:       CTQ30206.1  [L=234]
Description: putative N-acetylmannosamine-6-P epimerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-84  279.9   0.0    7.7e-84  279.7   0.0    1.0  1  NanE             Putative N-acetylmannosamine-6-phosphate epi
  ------ inclusion threshold ------
      0.058   12.4   1.6       0.62    9.0   0.0    2.4  3  IMPDH            IMP dehydrogenase / GMP reductase domain
       0.17   11.9   0.1        1.2    9.2   0.0    2.2  2  Molybdopterin_N  Molybdopterin oxidoreductase N-terminal doma


Domain annotation for each model (and alignments):
>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.7   0.0   1.3e-87   7.7e-84       1     191 [.      35     225 ..      35     226 .. 0.99

  Alignments for each domain:
  == domain 1  score: 279.7 bits;  conditional E-value: 1.3e-87
                 HHHHHHHHHHHT-SEEEEESHHHHHHHHTT--S-EEEE-B---TTS---BS-SHHHHHHHHTTT-SEEEEE--SS--T--HHHHHHHHHHH--EEEEE- CS
        NanE   1 vaamakaaeqaGavgiriegvedikaikavvdlPiiGivkrdlpdsevritatlkdideLaaagadiialDatdrerpvtieelikkikekyqllmaDi 99 
                 vaama+aaeqaGav++rieg ++++a++  v++P+iG++krdlpds+vrit++l+did+La+ gadiia+D+t+r+rp ++ +l+++i++ ++++maD+
  CTQ30206.1  35 VAAMALAAEQAGAVALRIEGQANLQAVRPLVTVPVIGLIKRDLPDSPVRITPWLEDIDALAQGGADIIAIDGTQRQRPASVSALLAEIHQLGKVAMADC 133
                 689************************************************************************************************ PP

                 SSHHHHHHHHHTT-SEEE-TTTTSSTTS-.SS--HHHHHHHHHTT--EEEES---SHHHHHHHHTT--SEEEE-HHHH-HHHHHHHHHHHT- CS
        NanE 100 stleeglvakklGvdivGttlsGytkeeekaepDfalvkalseaglkviaeGrintPekakkaieiGvdavvvGsaitrleeiakkfveaik 191
                 s+l+++l + +lG++ivGttlsGyt ee+++epD+alv+ ls+ag++viaeGr+ntP++a++a+++G++av+vGsaitrle+i+ ++++a+k
  CTQ30206.1 134 SSLDDALECWQLGAEIVGTTLSGYTAEETPDEPDLALVQCLSAAGCRVIAEGRYNTPAQAAEAMRCGAWAVTVGSAITRLEHICGWYNTALK 225
                 *****************************************************************************************998 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.36   2.2e+03      33      58 ..      29      54 ..      24      57 .. 0.81
   2 ?    2.1   0.0     0.013        76     106     132 ..      88     114 ..      82     151 .. 0.74
   3 ?    9.0   0.0    0.0001      0.62     201     243 ..     172     214 ..     168     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.36
                ESSSEEE-SSTTT-SHHHHHHHHHTT CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 33 lniPlvsaamdtvtesemAialareG 58
                l  P + aam   +e+  A+al  eG
  CTQ30206.1 29 LDNPAIVAAMALAAEQAGAVALRIEG 54
                66788899999999999998887776 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.013
                 HHHHHHHHHTT-SEEEEE-STSSSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 106 lervkalveagvdvlvvdsahghsekv 132
                 le ++al++ g+d++++d ++ +    
  CTQ30206.1  88 LEDIDALAQGGADIIAIDGTQRQRPAS 114
                 57899*************877665433 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0001
                 HHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 201 eaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagte 243
                 +  + ag +via G  ++  + + A+ +Ga av +Gs +++ e
  CTQ30206.1 172 QCLSAAGCRVIAEGRYNTPAQAAEAMRCGAWAVTVGSAITRLE 214
                 55677899*****************************998876 PP

>> Molybdopterin_N  Molybdopterin oxidoreductase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0002       1.2      12      33 ..      13      34 ..      10      40 .. 0.84
   2 ?   -0.2   0.0      0.17     1e+03      18      27 ..      82      91 ..      79      93 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0002
  Molybdopterin_N 12 vkdGkivgvrPfegDpdPspll 33
                       +G iv+++P +g p  +p +
       CTQ30206.1 13 HHGGLIVSCQPVPGSPLDNPAI 34
                     5789***************987 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.17
  Molybdopterin_N 18 vgvrPfegDp 27
                     v+++P+ +D 
       CTQ30206.1 82 VRITPWLEDI 91
                     89*****995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1966.82
//
Query:       CTQ30207.1  [L=164]
Description: ClpXP protease specificity-enhancing factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-43  148.2   0.0      2e-43  148.1   0.0    1.0  1  SspB      Stringent starvation protein B


Domain annotation for each model (and alignments):
>> SspB  Stringent starvation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   0.0   1.1e-47     2e-43       2     160 .]       9     164 .]       8     164 .] 0.89

  Alignments for each domain:
  == domain 1  score: 148.1 bits;  conditional E-value: 1.1e-47
                 SHHHHHHHHHHHHHHHHCCCTT.-ET..EEEEEETTSTT-BS-HHHHGGGSBTTEEEEE...CCEEEEEE-SSEEEEEEEETTEEEEEEEEGGGEEEEE CS
        SspB   2 lrpyalRavvrwvldevaeene.lpehhFyitvdtdapgVkvperLreeypeemtIvLq...hafsdLevtedafevglrFggvpeklvvPfaavlafy 96 
                 +rpy+lRa+++w+ld     n+ +p    +++vd+++pgV vp    +ey+++++IvL+   +a+ +Le+ +d++++++rFggvp+++ vP+aavla+y
  CTQ30207.1   9 RRPYLLRAFYDWLLD-----NQlTP----HLVVDVTLPGVLVP----MEYARDGQIVLNiapRAVGNLELANDEVRFNARFGGVPRNVSVPLAAVLAIY 94 
                 69*************.....*****....**************....**************************************************** PP

                 ETTTTEEEE-.--BGGGCHT.TSXXSS.CXXXXXXXX..............XXXXXXXXXXXXXXXXXXXX. CS
        SspB  97 dpevgfglqFeeaeeaeeeeeeeeaee.eeeaaeeea.......keeeeeaeeaedeeapkekkrpglkvVk 160
                 ++e+g+g++F e+e+a++e+ ++ +++  ++++e+ +        ++++++++++d+++p +++rp l+vVk
  CTQ30207.1  95 ARENGAGTMF-EPEAAYDEDVSSLNDDdVAPESES-EtvmsvidGDKPDNHDDDPDDTPPPRGGRPALRVVK 164
                 **********.666666666555554404444444.3599***9678899999999999999*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1305.75
//
Query:       CTQ30208.1  [L=212]
Description: stringent starvation protein A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-22   77.9   0.0    6.1e-20   71.4   0.0    2.2  2  GST_N         Glutathione S-transferase, N-terminal domain
    8.8e-17   61.3   0.0    1.6e-16   60.5   0.0    1.4  1  GST_N_3       Glutathione S-transferase, N-terminal domain
      3e-13   49.9   0.1    6.3e-13   48.8   0.1    1.5  1  GST_N_2       Glutathione S-transferase, N-terminal domain
    3.4e-12   46.4   0.0      5e-12   45.9   0.0    1.3  1  GST_C         Glutathione S-transferase, C-terminal domain
    5.3e-08   32.8   0.1    1.1e-07   31.7   0.1    1.5  1  GST_C_2       Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.023   14.9   0.0      0.046   13.9   0.0    1.5  1  Glutaredoxin  Glutaredoxin
      0.084   13.5   0.0       0.21   12.2   0.0    1.6  2  GST_C_5       Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0   2.4e-23   6.1e-20       2      76 .]      10      81 ..       9      81 .. 0.94
   2 ?    4.5   0.0     0.018        45      36      65 ..     126     157 ..     121     159 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 2.4e-23
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEETTEEEESHHHHHHHHHH CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedngkkltESraIleYiar 76
                v+tl+s+++++++h++r++la+kgv++e+ +++ ++++   ++l++lnp++ vP+L+d++++l+ESr+I+eY+++
  CTQ30208.1 10 VMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVE-KDNPP--QDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDE 81
                79*******************************.45554..9*******************************85 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.018
                 TTTCGGC.HHHHHHCTT.S-SSEEEETTEEEE CS
       GST_N  36 eageeks.pellklnpl.gkvPaLedngkklt 65 
                 +a++++  +ell + p   + P++  +++ l+
  CTQ30208.1 126 DAARKQLrEELLAIAPVfTQKPYFLSDEFSLV 157
                 455666679******************99987 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   6.1e-20   1.6e-16       1      75 []      13      87 ..      13      87 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 6.1e-20
                EES-TTSHHHHHHHHHHHHHT--EEEE---TTTTHHHHHHH-TT--SSEEETTS-EEESHHHHHHHHHHHH-GGG CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvevvevtpgehdeellaknplgkvPvLeddgealtdSlaIidyLeelypgpp 75
                L++ p+  y+  vr++L ekg+++e+++v++++ ++ l   np++ vP+L+d +  l++S+ I++yL+e++p pp
  CTQ30208.1 13 LFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPP 87
                666778889**************************************************************9876 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.1   2.4e-16   6.3e-13       4      69 ..      21      81 ..      20      82 .. 0.93

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 2.4e-16
                HHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHHH CS
     GST_N_2  4 wahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlrylet 69
                ++h v+i+la+kg+ ++i+ v    + +++++++ +lnp+ +VP+L+d     ++eS+ I++yl++
  CTQ30208.1 21 YSHQVRIVLAEKGVSFEIEHV----EKDNPPQDLIDLNPNQSVPTLVD-RELTLWESRIIMEYLDE 81
                89*******************....6678899***************9.558************98 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0     2e-15     5e-12       3      93 .]     103     194 ..     101     194 .. 0.94

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 2e-15
                 HHHHHHHHHHHSTTH.HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C   3 dlisqilllfyvkae.ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerimarp 93 
                 + ++++ ++++++ +    ++ +d+a+++++e l a+  ++ ++ y+  d+++l+D++l+p+l++l+ lg++++ ++ ++lk +++r+++r+
  CTQ30208.1 103 MQRIEKDWYSLMNTIqSGTAAQADAARKQLREELLAIAPVFTQKPYFLSDEFSLVDCYLAPLLWRLPVLGVELVGAGAKELKGYMTRVFERD 194
                 67889999999999977778899******************************************************************996 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   4.4e-11   1.1e-07       2      67 ..     123     187 ..     122     189 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 4.4e-11
                 HHHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS----.TT-HHHHHHH CS
     GST_C_2   2 aaveraleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdir.eaypnlraWl 67 
                 a  ++a++ql++ l a++   +++p+++ d+++l+D+ lap l+rl + g   ++  ++++ l+ ++
  CTQ30208.1 123 AQADAARKQLREELLAIAPVFTQKPYFLSDEFSLVDCYLAPLLWRLPVLGV--ELVgAGAKELKGYM 187
                 677899***************************************977775..34445666666666 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.8e-05     0.046       3      54 ..      13      63 ..      11      67 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-05
                  EEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEE CS
  Glutaredoxin  3 lftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvf 54
                  lf+ pt  y+++++ +L e+gv+fe+  v+kd +  ++l +l++ ++vP+++
    CTQ30208.1 13 LFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKD-NPPQDLIDLNPNQSVPTLV 63
                  666677779**********************9.8888899999999999986 PP

>> GST_C_5  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.9     1e+04      73      91 ..       7      26 ..       4      31 .. 0.72
   2 ?   12.2   0.0   8.1e-05      0.21      41      73 ..     134     168 ..     107     181 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.9
                HHHHCCCCCT.--CCCT-HH CS
     GST_C_5 73 lkavlsyyaG.ydlfakaPr 91
                 ++v++ ++G  d++++  r
  CTQ30208.1  7 KRSVMTLFSGpTDIYSHQVR 26
                57889999553789888665 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 8.1e-05
                 HHHHCCHT..SSSSECCECC--HHHHHHHHHHHHH CS
     GST_C_5  41 edllakhq..geGPyfldkelsmadvavvPflvrl 73 
                 e+lla  +  ++ Pyfl +e+s+ d  + P+l rl
  CTQ30208.1 134 EELLAIAPvfTQKPYFLSDEFSLVDCYLAPLLWRL 168
                 67788777779*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1462.10
//
Query:       CTQ30209.1  [L=130]
Description: 30S ribosomal protein S9 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-47  159.0   1.4    7.5e-47  158.8   1.4    1.0  1  Ribosomal_S9  Ribosomal protein S9/S16
  ------ inclusion threshold ------
       0.13   12.1   0.0       0.21   11.5   0.0    1.3  1  Flg_hook      Flagellar hook-length control protein FliK


Domain annotation for each model (and alignments):
>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.8   1.4   8.3e-51   7.5e-47       1     121 []      10     130 .]      10     130 .] 0.99

  Alignments for each domain:
  == domain 1  score: 158.8 bits;  conditional E-value: 8.3e-51
                   EECTTEEEEEEEEESSSEEEETTEECCHHSTTSCHHHHHCHHHHHTTTSSSEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTCCCTS- CS
  Ribosomal_S9   1 GrrKesvArvwikegkgkilvngksleeYfkeeaarekvleplkltgllgkfdvfvkvkgGGlsgqaeAirlgiaraLvalekeekkeLkkaglltr 97 
                   GrrK+s+Arv ik+g+gki++n++sle+Yf +e+ar+ v +pl+l+++++k+d +++vkgGG+sgqa+Air+gi+raL++++++ ++eL+kag++tr
    CTQ30209.1  10 GRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTR 106
                   9*****************************99***************************************************77************ PP

                   B--------TTSSCTTB----S-- CS
  Ribosomal_S9  98 DpRvvErkKtgkkkARkkyqwskR 121
                   D+R+vErkK+g++kAR+++q+skR
    CTQ30209.1 107 DARQVERKKVGLRKARRRPQFSKR 130
                   ***********************9 PP

>> Flg_hook  Flagellar hook-length control protein FliK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.3e-05      0.21      26      74 ..      60     108 ..      55     116 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.3e-05
                 EEEEEEEEETTEEEEEEEE-SCHHHHHHHHTHHHHHHHHHCCTTCCEEE CS
    Flg_hook  26 kvevkltlrggqlsvqltaenpetrelLeqnlprLreaLaaaGlklddl 74 
                 k+++ +t++gg++s q  a +    ++L +  ++Lr++L++aG+   d+
  CTQ30209.1  60 KLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDA 108
                 79999**************************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1069.78
//
Query:       CTQ30210.1  [L=167]
Description: 50S ribosomal protein L13 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-57  191.8   0.4    5.5e-57  191.4   0.4    1.2  1  Ribosomal_L13  Ribosomal protein L13


Domain annotation for each model (and alignments):
>> Ribosomal_L13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.4   0.4   3.1e-61   5.5e-57       2     125 .]      40     163 ..      39     163 .. 0.99

  Alignments for each domain:
  == domain 1  score: 191.4 bits;  conditional E-value: 3.1e-61
                    EEEEEETTSBHHHHHHHHHHHHHTTTSTT--TTS--S-EEEEEEGGCBB-SSTHHTT-EEEEE-SSTTSEEEEEHHHHHCCSHHHHHHHHHHCCS- CS
  Ribosomal_L13   2 WyviDAegqvlgrlaskiakvLrGkhkptytphvdcGdyvvvinaekvaltgkkleqkvyyrhtgypgglkevtakellekkpeeilekaVkgmLp 97 
                    Wyv+DA+g++lgrla+++a++LrGkhk++ytphvd+Gdy++v+naekva+tg+k e+k+yy+htg++gg+ke+t++e+++++pe+++e aVkgmLp
     CTQ30210.1  40 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKREDKMYYHHTGHIGGIKEATFEEMIARRPERVIEIAVKGMLP 135
                    ************************************************************************************************ PP

                    SSHHHHHHGCTEEEESSSTTSGGGGSCE CS
  Ribosomal_L13  98 knklgrrrlkrLkvyageehpheaqkpe 125
                    k+ lgr+++++Lkvyag+eh+h+aq+p+
     CTQ30210.1 136 KGPLGRAMYRKLKVYAGNEHNHAAQQPQ 163
                    **************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1366.20
//
Query:       CTQ30211.1  [L=375]
Description: conserved hypothetical protein; putative nucleoside triphosphate hydrolase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.7e-160  533.8   0.0     2e-160  533.6   0.0    1.0  1  AFG1_ATPase  AFG1-like ATPase
  ------ inclusion threshold ------
       0.15   12.3   0.1       0.25   11.6   0.1    1.3  1  DUF4262      Domain of unknown function (DUF4262)


Domain annotation for each model (and alignments):
>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  533.6   0.0  2.2e-164    2e-160       2     361 ..       5     371 ..       4     372 .. 0.99

  Alignments for each domain:
  == domain 1  score: 533.6 bits;  conditional E-value: 2.2e-164
  AFG1_ATPase   2 tprqryekelqrgeivadaaqaeavealdrlteelaaqdlarks.....salgklfgrkr..ksvepvrglYlwGgvGrGKtylmdlffeslpvekkr 92 
                  +p++ry  +l++g++++d++q+eav++ld +++el++q+ +  s     +++gkl+g+++    + pvrglY+wGgvGrGKt+lmdlf++slp+e+k+
   CTQ30211.1   5 SPTSRYLLALKEGSHQPDDVQQEAVSRLDTIYQELQTQPAPVASggglrAKFGKLLGKREpaAGTAPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQ 102
                  6899************************************99999999999******998666789******************************** PP

  AFG1_ATPase  93 rvhfhafmarvhdeltklrkekdplaivadrlaeearvlCfDEfevsDiadamllsrLleaLfargvtlvaTSNiaPedLykdglqrqrFLpaIdlle 190
                  r+hfh+fm+rvh+elt+l++++dpl+ivadr+++e++vlCfDEf+vsDi+damll+ L++aLfarg+tlvaTSNi+P++Ly++glqr+rFLpaId+++
   CTQ30211.1 103 RLHFHRFMLRVHEELTTLQGHSDPLEIVADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIK 200
                  ************************************************************************************************** PP

  AFG1_ATPase 191 shlevlevdggvDYRlrklrqaevylapldeaaeaaldklfkeltsgepeaestlevkaRklrvraaagdlvrfsfaelceaarsqsdYlalaerfht 288
                  +h+++++vd+g DYRlr+l+qa+++l+pl++ +++++dkl+ +l+ + ++a  tle+++R+l +  ++++++++sfa+lc +arsq+dY+al++ fht
   CTQ30211.1 201 QHCDIMNVDAGIDYRLRTLTQAHLWLSPLNNDTREQMDKLWLALAGAPRAAGPTLEINHRELPTLGVENQTLAASFATLCVDARSQHDYIALSRLFHT 298
                  ************************************************************************************************** PP

  AFG1_ATPase 289 vlledVpvltkakedaarRfiaLvDelYdadvklvvsaevaleelyeagrlefefeRtaSRLlelqsedylar 361
                  v+l dVpv+t   e++arRfiaLvDe+Y+++vklvvsa v+l+++y+++rl+fef+R++SRL+e+qse+yl+r
   CTQ30211.1 299 VMLFDVPVMTAQLESEARRFIALVDEFYERHVKLVVSAAVPLYDIYQGERLKFEFQRCLSRLQEMQSEEYLKR 371
                  ***********************************************************************98 PP

>> DUF4262  Domain of unknown function (DUF4262)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   2.8e-05      0.25      27     107 ..     252     331 ..     250     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.8e-05
     DUF4262  27 GltetfghpElivfGlppelahalLnevadrvregerlleggeleddvleg.ypvklleveesayeeylgvAlafygeedvp 107
                 G t +++h El  +G++ ++ +a + +++ ++r++++ ++ ++l+++v+   +pv+  ++e s+ ++++    +fy+++ v+
  CTQ30211.1 252 GPTLEINHRELPTLGVENQTLAASFATLCVDARSQHDYIALSRLFHTVMLFdVPVMTAQLE-SEARRFIALVDEFYERH-VK 331
                 6677889**************************************8776544777777777.78999999999999985.54 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2851.43
//
Query:       CTQ30212.1  [L=58]
Description: hypothetical protein CH1034_300320 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       309  (0.0172346); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 457.34
//
Query:       CTQ30213.1  [L=132]
Description: putative cytochrome d ubiquinol oxidase subunit III [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-47  160.3   0.1      2e-47  160.2   0.1    1.0  1  DUF1043         Protein of unknown function (DUF1043)
    0.00091   19.4   4.3     0.0011   19.1   4.3    1.1  1  DUF3958         Protein of unknown function (DUF3958)
     0.0011   18.3   0.2     0.0014   18.0   0.2    1.1  1  HemX            HemX, putative uroporphyrinogen-III C-methylt
  ------ inclusion threshold ------
      0.011   15.6   4.7      0.017   15.0   4.7    1.3  1  Apolipoprotein  Apolipoprotein A1/A4/E domain
      0.027   14.8   2.1      0.034   14.5   2.1    1.1  1  HrpB7           Bacterial type III secretion protein (HrpB7)
      0.045   13.5   0.1      0.069   12.9   0.1    1.2  1  MctB            Copper transport outer membrane protein, MctB
      0.067   11.3   0.1      0.075   11.2   0.1    1.0  1  KAP             Kinesin-associated protein (KAP)
      0.072   12.8   0.3      0.086   12.6   0.3    1.1  1  KRAP_IP3R_bind  Ki-ras-induced actin-interacting protein-IP3R
      0.076   12.1   0.7        0.1   11.7   0.7    1.1  1  AAA_9           ATP-binding dynein motor region
      0.079   12.5   0.4       0.09   12.3   0.4    1.0  1  Exonuc_VII_L    Exonuclease VII, large subunit
       0.09   13.1   0.0       0.15   12.3   0.0    1.4  1  DUF2501         Protein of unknown function (DUF2501)
       0.17   11.9   0.6       0.27   11.2   0.6    1.3  1  DUF4514         Domain of unknown function (DUF4514)
        9.3    6.9   5.9         52    4.5   5.9    2.3  1  YtxH            YtxH-like protein


Domain annotation for each model (and alignments):
>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.2   0.1   1.5e-50     2e-47       1     122 [.       6     126 ..       6     127 .. 0.96

  Alignments for each domain:
  == domain 1  score: 160.2 bits;  conditional E-value: 1.5e-50
     DUF1043   1 aliglvvGiiiGalilrltnsklkkqkklekelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqhlaksseeLlpeleeqelfqqkkleekka 99 
                 aliglvvGiiiGa+++r++n+kl++q+ l+ elek+kaelee+++el +Hfa+saelL+++a+dy++Lyqh+akss++Llp++  + ++++++lee++a
  CTQ30213.1   6 ALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYREELVSHFARSAELLDNMAHDYRQLYQHMAKSSNNLLPDSMADANPFRNRLEESEA 104
                 69***********************************************************************************************99 PP

     DUF1043 100 eaeeeeeeeqPrDYsegasgllk 122
                 ++++++  + PrDYsegasgll+
  CTQ30213.1 105 SNDQAP-VQMPRDYSEGASGLLR 126
                 888555.556***********97 PP

>> DUF3958  Protein of unknown function (DUF3958)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   4.3   8.2e-07    0.0011       7      84 ..      25     104 ..      22     119 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.2e-07
     DUF3958   7 nqelrelaekqeenekelkkqeqlkeeyeehfnqskrlfdelletfrkd..eeshlfeklrdevqrlsrklredLEeeee 84 
                 n +lr+ ++ q+e+ek+  + e+ +ee+ +hf +s++l+d+++  +r+   +++ + ++l  +        r++LEe+e 
  CTQ30213.1  25 NRKLRQQQALQYELEKNKAELEEYREELVSHFARSAELLDNMAHDYRQLyqHMAKSSNNLLPDSMADANPFRNRLEESEA 104
                 7899*******************************************9777999999**999999999999999999986 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2   9.9e-07    0.0014       7      81 ..       5      84 ..       2     112 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 9.9e-07
        HemX  7 lallallvalavgaglyylgqqqvqeltaevaelqqqlaaleqqlaq....veaekeqkqeleerlqqlaeklea.leke 81
                 al+ l+v++ +ga ++ +g+ +  +++a + el+++ a+le+  ++    ++ ++e  ++++++++ql +++++ ++++
  CTQ30213.1  5 YALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYREElvshFARSAELLDNMAHDYRQLYQHMAKsSNNL 84
                6899********************99999999999999999999999655555555556666666666644433303334 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   4.7   1.2e-05     0.017      37     111 ..      29     102 ..      19     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
                     HHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHHHHHHHHHH CS
  Apolipoprotein  37 elrarlraeleevrarlepyrdevqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaeelrerlerh 111
                       +++l+ ele  +a le+yr+e+   ++ ++e l++  a   ++l + +a+ +++l     + a+ +r+rle++
      CTQ30213.1  29 RQQQALQYELEKNKAELEEYREELVSHFARSAELLDNM-AHDYRQLYQHMAKSSNNLLPDSMADANPFRNRLEES 102
                     67999***************************999987.666677777788888888887777888888888775 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   2.1   2.5e-05     0.034      11      95 ..      25     110 ..      19     122 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.5e-05
       HrpB7  11 errarreerlraeleaaraalaaaeaalaaaqaqveaardavraheerlddltt.gsspfsiadylacrayrdvlegrvraaeael 95 
                 +r+ r++++l+ ele+ +a+l++  ++l +  a  ++  d+++   ++l + ++  s  ++ + ++  + +r  le+  +  +++ 
  CTQ30213.1  25 NRKLRQQQALQYELEKNKAELEEYREELVSHFARSAELLDNMAHDYRQLYQHMAkSSNNLLPDSMADANPFRNRLEESEASNDQAP 110
                 79**************************9999988888888877777776655515566888888888899998888766666655 PP

>> MctB  Copper transport outer membrane protein, MctB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     5e-05     0.069      16      74 ..       8      68 ..       6      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5e-05
        MctB 16 LALavGivlGsgvlsd..nlldtlegqveelreekeelraeadaleaqleaaddfaaavap 74
                ++L vGi++G+ +++   + l + ++ + el+++k el++ +++l +  +++ ++ +++a 
  CTQ30213.1  8 IGLVVGIIIGAVAMRFgnRKLRQQQALQYELEKNKAELEEYREELVSHFARSAELLDNMAH 68
                79*********99864226688888888899999999999999999999999988888876 PP

>> KAP  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   5.5e-05     0.075     202     266 ..       9      74 ..       4      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.5e-05
         KAP 202 slivqykigalvmdvidyelkryetlreeldkkkkaaeekpil.kkdyekslkklkilvkkqeqll 266
                 +l+v   iga++m   + +l++ ++l+ el+k+k   ee  ++  +++ +s   l  +++   ql 
  CTQ30213.1   9 GLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYREElVSHFARSAELLDNMAHDYRQLY 74 
                 7899999***************************99888765437888888877766666666664 PP

>> KRAP_IP3R_bind  Ki-ras-induced actin-interacting protein-IP3R-interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   6.2e-05     0.086      75     116 ..      40      98 ..      28     122 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.2e-05
  KRAP_IP3R_bind  75 kqRidiEnpn..lasrF.rqlevldavanafssLlsdvsklpvq..............a 116
                     k++ ++E+    l+s+F r  e ld++a+ + +L+++++k  ++              +
      CTQ30213.1  40 KNKAELEEYReeLVSHFaRSAELLDNMAHDYRQLYQHMAKSSNNllpdsmadanpfrnR 98 
                     444455554445*****7889******************99999877777666655431 PP

>> AAA_9  ATP-binding dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7   7.4e-05       0.1     149     204 ..      30      88 ..      23      93 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHSSSSSSTHH CS
       AAA_9 149 edqlLaevvkkerpeleekkeeliqeeaenkkqlkeled...klLeeLseaegniLede 204
                 ++q L+  ++k++ elee +eel+++ a+  + l+++ +   +l + ++++++n+L d+
  CTQ30213.1  30 QQQALQYELEKNKAELEEYREELVSHFARSAELLDNMAHdyrQLYQHMAKSSNNLLPDS 88 
                 5799************************9999999987433379999999999999886 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   6.5e-05      0.09     149     226 ..      23     105 ..      12     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.5e-05
  Exonuc_VII_L 149 leelerrlekaikrlleekkqrleklasrl....kspeellerkrqrldeleerleralkkqlkkkrerleelkerl.kekle 226
                   + + + r ++a++  le++k++le+++++l    +++ ell++ ++ +++l +++ ++ ++ l  + ++ + +++rl +++ +
    CTQ30213.1  23 FGNRKLRQQQALQYELEKNKAELEEYREELvshfARSAELLDNMAHDYRQLYQHMAKSSNNLLPDSMADANPFRNRLeESEAS 105
                   55667788899999999999999999988876656778899999999999999999988888888888888888777443333 PP

>> DUF2501  Protein of unknown function (DUF2501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011      0.15       2      46 ..      82     129 ..      81     132 .] 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
     DUF2501   2 nnyls..assassvkdqLlgklglq.taeaekdsdYqqGlqGlLktsn 46 
                 nn+l     +a+  +++L +    + +a  +   dY++G++GlL ++ 
  CTQ30213.1  82 NNLLPdsMADANPFRNRLEESEASNdQAPVQMPRDYSEGASGLLRGGA 129
                 7888644678888999999888877678889999**********9986 PP

>> DUF4514  Domain of unknown function (DUF4514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.6    0.0002      0.27      20      36 ..       3      19 ..       1      24 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
     DUF4514 20 iKYaiiGtalGvaisAg 36
                + Ya+iG  +G++i A+
  CTQ30213.1  3 WEYALIGLVVGIIIGAV 19
                57************997 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   5.9     0.038        52       1      17 [.       7      23 ..       7     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.038
        YtxH  1 llglliGaavGaaaglL 17
                l+gl++G+++Ga+a  +
  CTQ30213.1  7 LIGLVVGIIIGAVAMRF 23
                79***********9666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1921  (0.107145); expected 358.6 (0.02)
Passed bias filter:                     1264  (0.0705003); expected 358.6 (0.02)
Passed Vit filter:                       186  (0.0103743); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.45u 0.31s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 922.54
//
Query:       CTQ30214.1  [L=455]
Description: serine endoprotease, periplasmic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-30  105.6   0.1      7e-30  104.9   0.1    1.3  1  Trypsin_2      Trypsin-like peptidase domain
    3.4e-28   97.8   0.3    5.4e-17   61.9   0.0    2.6  2  PDZ_2          PDZ domain
    4.1e-26   91.2   6.7    7.7e-15   55.0   0.1    3.2  3  PDZ            PDZ domain
    4.1e-19   68.2   2.2    6.5e-09   35.5   0.0    2.8  3  PDZ_6          PDZ domain
    1.4e-15   57.7   0.0    2.3e-15   57.0   0.0    1.2  1  Trypsin        Trypsin
     0.0073   16.2   0.4       0.16   12.0   0.1    2.8  2  Tricorn_PDZ    Tricorn protease PDZ domain
     0.0078   14.9   0.1       0.19   10.3   0.7    2.0  2  Peptidase_S46  Peptidase S46
  ------ inclusion threshold ------
      0.032   14.6   0.0        3.6    7.9   0.0    2.4  2  GRASP55_65     GRASP55/65 PDZ-like domain
       0.11   12.2   0.0       0.28   10.9   0.0    1.6  1  LSM            LSM domain


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.1   3.5e-33     7e-30       1     150 []      92     228 ..      92     228 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 3.5e-33
   Trypsin_2   1 GsGflvgsd.glilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkvssderaglpplplgpsealkggepvyvvGyplggek 98 
                 GsG+++++  g++lTn+Hv+++a++ +v           +dgre++ak+v++d+++D+All++    ++ l  + +++s++l++g+ +++vG+p g + 
  CTQ30214.1  92 GSGVIIDAAkGYVLTNNHVINQAQKISV---------QLNDGREFDAKLVGSDEQSDIALLQL--IKPDHLTQIAIADSDKLRVGDFAVAVGNPFGLGQ 179
                 9******99679****************.........**************************..*********************************9 PP

   Trypsin_2  99 sgsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                   +++sGi+s++ + ++ + +  e+f+qtda++++G+SGG+l++ +G+++G+
  CTQ30214.1 180 --TATSGIISALGR-SGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGI 228
                 ..9***********.999999999***************************8 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   2.7e-20   5.4e-17      13      82 .]     289     358 ..     259     358 .. 0.91
   2 !   33.3   0.1   2.3e-11   4.6e-08      11      61 ..     384     437 ..     375     452 .. 0.82

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 2.7e-20
                 ..-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEEE- CS
       PDZ_2  13 tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvevkl 82 
                 ++g+ v +V +++ +akag+k+gDvi++++gk+++s ++l+s++++++pG++Vkl +lRdgk  +vev+l
  CTQ30214.1 289 QRGAFVSEVLPNSGSAKAGIKSGDVIVSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRDGKPVDVEVTL 358
                 78******************************************************************97 PP

  == domain 2  score: 33.3 bits;  conditional E-value: 2.3e-11
                 --.....-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-T CS
       PDZ_2  11 ed...tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkp 61 
                 +    t+gv++ +V++g+ aa+ gl+++D+i+ ++ ++++s ++l+++l +k p
  CTQ30214.1 384 QMkdgTKGVVIDNVDKGSAAAQVGLHKDDIIIGLNRQRIHSIAELRKALEGKPP 437
                 4444499******************************************98877 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.7   3.4e+03      38      55 ..     156     173 ..     151     179 .. 0.80
   2 !   55.0   0.1   3.9e-18   7.7e-15       7      81 ..     263     345 ..     257     346 .. 0.93
   3 !   38.0   0.9     8e-13   1.6e-09      13      81 ..     377     443 ..     369     444 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.7
                 HHHHHTSSTTEEEEEETT CS
         PDZ  38 aaeadglkvGDkIlsvNg 55 
                  a+ d+l+vGD  ++v++
  CTQ30214.1 156 IADSDKLRVGDFAVAVGN 173
                 467777*****8888875 PP

  == domain 2  score: 55.0 bits;  conditional E-value: 3.9e-18
                 S.TTSESSEEEEEETTSS.......SSSSEEEEEECTT.SHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ   7 e.grgglGfslkggsdqr.......gdkgifvsevlpg.gaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                 e +rg lG+++ ++s++         ++g+fvsevlp+ g+a+a+ +k GD+I+s Ng++++++++++  +a+++++ kv+L +
  CTQ30214.1 263 EiKRGLLGIKGMEMSADIakamnlnVQRGAFVSEVLPNsGSAKAG-IKSGDVIVSLNGKPLNSFAELRSRIATTEPGTKVKLGL 345
                 348999********99999**************************.***********************************976 PP

  == domain 3  score: 38.0 bits;  conditional E-value: 8e-13
                 SEEEEEETTSSSSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTSEEEEEE CS
         PDZ  13 GfslkggsdqrgdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskgkvtLti 81 
                 G+s + g+ ++g kg+++ +v +g+aa++ gl+++D+I++ N + + ++++++++++ k++  +++L++
  CTQ30214.1 377 GASFSDGQMKDGTKGVVIDNVDKGSAAAQVGLHKDDIIIGLNRQRIHSIAELRKALEGKPP--VIALNV 443
                 6777777777899***********8888888**********************99999998..788876 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1         3     6e+03      11      25 ..     157     171 ..     156     173 .. 0.69
   2 !   35.5   0.0   3.3e-12   6.5e-09       1      52 [.     293     343 ..     293     347 .. 0.90
   3 !   31.6   0.3   5.6e-11   1.1e-07       1      47 [.     393     437 ..     393     445 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3
       PDZ_6  11 AdrAGlrvGDiilsv 25 
                 Ad   lrvGD  ++v
  CTQ30214.1 157 ADSDKLRVGDFAVAV 171
                 555569****76666 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 3.3e-12
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallr.gsagesvvl 52 
                 +V++V p+s  ++AG++ GD+i+s+NG+p+   s a++++ ++ + +g++v l
  CTQ30214.1 293 FVSEVLPNSGSAKAGIKSGDVIVSLNGKPL--NSFAELRSRIAtTEPGTKVKL 343
                 79****************************..**********97777777766 PP

  == domain 3  score: 31.6 bits;  conditional E-value: 5.6e-11
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqpveglsladvaallrgsag 47 
                 v+  Vd+gs A++ Gl   Dii+ +N q +  +s+a+++ +l+g+++
  CTQ30214.1 393 VIDNVDKGSAAAQVGLHKDDIIIGLNRQRI--HSIAELRKALEGKPP 437
                 5889**************************..**********96654 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   1.1e-18   2.3e-15      28     218 ..      93     252 ..      80     255 .. 0.82

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 1.1e-18
                 EEEEEETT..EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTSTTTEEEE CS
     Trypsin  28 gGslisen..wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttclv 124
                 +G++i++   +vlT++H++++a++++v       + ++g  ++++ +       +++++ + Diall+l +p    d+   i++++ s++l vg  +++
  CTQ30214.1  93 SGVIIDAAkgYVLTNNHVINQAQKISV-------QLNDG--REFDAKL------VGSDE-QSDIALLQLIKP----DHLTQIAIAD-SDKLRVG--DFA 168
                 5888887777**********9666655.......77888..4666665......56666.78**********....**********.7756666..*** PP

                 EESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEESSSSCTTS.EEEEEEGGGGH CS
     Trypsin 125 sGwgrtkekgksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswgkgcakgnr.pgvytkvssyl 218
                 +++g+++  g  +t +++ ++++ r+  + +      en+++++a     ++++G+SGG+l++ +gel+Gi+++    + g   +g++++ ++++
  CTQ30214.1 169 VAVGNPFGLG--QTATSGIISALGRSGLNLE----GLENFIQTDA-----SINRGNSGGALLNLNGELIGINTAILAPGGGSIgIGFAIPSNMAK 252
                 **********..9999999999999855553....459*******.....9************************66666655589999887655 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1     8e-05      0.16      34      85 ..     304     353 ..     286     357 .. 0.81
   2 ?    1.0   0.0      0.21   4.3e+02      31      76 ..     401     443 ..     393     449 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8e-05
                  GGGS---.TT-EEEEETTEE-BTTB-HHHHHHTTT.TSEEEEEEE-STT-EEE CS
  Tricorn_PDZ  34 aepGvnvreGdlilavdgepvskekgiaelLvgka.gkeveLtvkrkdgkarr 85 
                  a+ G++   Gd+i++++g+p+++ +++ + ++ ++ g++v+L + r dgk  +
   CTQ30214.1 304 AKAGIK--SGDVIVSLNGKPLNSFAELRSRIATTEpGTKVKLGLLR-DGKPVD 353
                  677888..9******************9999877537999999988.445555 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.21
                  -GGGGGS---.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEE CS
  Tricorn_PDZ  31 SPLaepGvnvreGdlilavdgepvskekgiaelLvgkagkeveLtv 76 
                  S+ a+ G++  + d+i+ ++++++++ +++ ++L+gk    + L+v
   CTQ30214.1 401 SAAAQVGLH--KDDIIIGLNRQRIHSIAELRKALEGKPP-VIALNV 443
                  666677777..889********************99865.555555 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.037        74      43      69 ..      86     113 ..      69     123 .. 0.80
   2 !   10.3   0.7   9.5e-05      0.19     627     651 ..     205     229 ..     197     231 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.037
                    -EETTTEE-EE-.STT-EEEE-HHHHHH CS
  Peptidase_S46  43 vsflggCtasfV.SpeGLvlTNHHCayg 69 
                      f g  ++ ++ +++G vlTN H++ +
     CTQ30214.1  86 QPFEGLGSGVIIdAAKGYVLTNNHVINQ 113
                    5689999***996689********9765 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 9.5e-05
                    ES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 627 stnDitGGNSGSPvlngkgelvGla 651
                    +++ i  GNSG ++ln +gel+G++
     CTQ30214.1 205 TDASINRGNSGGALLNLNGELIGIN 229
                    5678889****************97 PP

>> GRASP55_65  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.026        51      41      89 ..     288     335 ..     265     362 .. 0.84
   2 ?    7.9   0.0    0.0018       3.6      42      87 ..     389     433 ..     352     439 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.026
                 TTS-EEEEEEBTTSHHHHHT--TTTEEEEEEE.SSSSSTSCSHHHHTTT CS
  GRASP55_65  41 aeevwhvldvlegsPaakagLvpksDYiiGldkgllkgeedlselveah 89 
                 +++   v +vl++s  akag++   D i+ l+ + l++ ++l++++ ++
  CTQ30214.1 288 VQRGAFVSEVLPNSGSAKAGIK-SGDVIVSLNGKPLNSFAELRSRIATT 335
                 566677899***********86.68*************99999999875 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0018
                 TS-EEEEEEBTTSHHHHHT--TTTEEEEEEE.SSSSSTSCSHHHHT CS
  GRASP55_65  42 eevwhvldvlegsPaakagLvpksDYiiGldkgllkgeedlselve 87 
                 ++ + + +v++gs aa+ gL  k D iiGl+++ +++ ++l++ +e
  CTQ30214.1 389 TKGVVIDNVDKGSAAAQVGLH-KDDIIIGLNRQRIHSIAELRKALE 433
                 45556779***********97.68***********99999988765 PP

>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014      0.28       9      36 ..     115     142 ..     111     147 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
                 SEEEEEETTSEEEEEEEEEEETTSEEEE CS
         LSM   9 kkvtvelkngrelrGtLkgfDqfmNlvL 36 
                 +k+ v+l++gre+  +L+g D++  + L
  CTQ30214.1 115 QKISVQLNDGREFDAKLVGSDEQSDIAL 142
                 89*******************9977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3482.39
//
Query:       CTQ30215.1  [L=352]
Description: serine endoprotease, periplasmic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-30  106.8   0.3    2.8e-30  106.2   0.3    1.3  1  Trypsin_2      Trypsin-like peptidase domain
      3e-17   63.2   0.0      6e-17   62.2   0.0    1.4  1  Trypsin        Trypsin
    3.9e-14   52.7   1.0    1.8e-13   50.6   0.2    2.3  2  PDZ_2          PDZ domain
    2.3e-12   47.1   1.5    2.3e-12   47.1   1.5    2.5  3  PDZ            PDZ domain
    1.1e-09   38.0   0.8    1.1e-09   38.0   0.8    2.2  2  PDZ_6          PDZ domain
  ------ inclusion threshold ------
       0.17   10.5   1.4        0.7    8.5   0.5    1.9  2  Peptidase_S46  Peptidase S46


Domain annotation for each model (and alignments):
>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.3   9.2e-34   2.8e-30       1     150 []      77     212 ..      77     212 .. 0.97

  Alignments for each domain:
  == domain 1  score: 106.2 bits;  conditional E-value: 9.2e-34
   Trypsin_2   1 GsGflvgsdglilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpel.DlAllkvssderaglpplplgpsealkggepvyvvGyplggek 98 
                 GsG++ +++g+ilTn Hv+++ad+  v         a +dgr+++a +v++d +l DlA+lk+  ++  glp++p+ p+++++ g+ v ++G+p   + 
  CTQ30215.1  77 GSGVIMDQRGYILTNKHVINDADQIIV---------ALQDGRVFEALLVGSD-SLtDLAVLKI--NATGGLPVIPINPKRTPHIGDVVLAIGNPYNLGQ 163
                 9**************************.........****************.666*******..****************************888888 PP

   Trypsin_2  99 sgsvssGivsgvvesesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                   ++++Gi+s++ +  + +++ + +flqtda++++G+SGG+l++s G++ G+
  CTQ30215.1 164 --TITQGIISATGR-IGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGI 212
                 ..************.***********************************98 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0     2e-20     6e-17      23     215 ..      71     236 ..      48     242 .. 0.79

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 2e-20
                 C..EEEEEEEEEETT.EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTST CS
     Trypsin  23 g..khlCgGslisen.wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpv 118
                     +l +G++++++ ++lT++H++++a+++ v         ++g        +v+ +  ++++    D+a+lk+++    g  v pi+  +     ++
  CTQ30215.1  71 HnqLTLGSGVIMDQRgYILTNKHVINDADQIIV-------ALQDG--------RVFEALLVGSDS-LTDLAVLKINAT--GGLPVIPINPKR-----TP 146
                 1444566899***999**********9444433.......45667........334444456666.66*********9..********9999.....45 PP

                 TTEEEEEESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEE.SSSSCTTS...EEEEEE CS
     Trypsin 119 gttclvsGwgrtkekgksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswg.kgcakgnr...pgvytk 213
                 + +++v ++g++++ g  +t++++ ++++ r   + +     ++n+l+++a     ++++G+SGG+lv+s gel+Gi++ + ++ ++g++   +g++++
  CTQ30215.1 147 HIGDVVLAIGNPYNLG--QTITQGIISATGRIGLNPT----GRQNFLQTDA-----SINHGNSGGALVNSLGELMGINTLSfDKSNDGETpegIGFAIP 234
                 5569************..9*******99999765553....689*******.....9************************877777777777899998 PP

                 GG CS
     Trypsin 214 vs 215
                 ++
  CTQ30215.1 235 FQ 236
                 87 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.48   1.4e+03      21      42 ..     137     156 ..     115     159 .. 0.71
   2 !   50.6   0.2   5.9e-17   1.8e-13       2      81 ..     255     344 ..     254     345 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.48
                 E-TTSGGGGT.--TT-EEEEET CS
       PDZ_2  21 VkeggPaakaglkagDvilkvd 42 
                 V + +P  k+  ++gDv+l+++
  CTQ30215.1 137 VIPINP--KRTPHIGDVVLAIG 156
                 445555..4444789***9997 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 5.9e-17
                 ...XX------............-EEEEEE-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEEE CS
       PDZ_2   2 ylGvsvsdeed..........tggvlvvsVkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvevk 81 
                 y+G+s ++  +           +g++v +V ++gPaa+ag++a+Dvi++v++k+  s  +   ++++ +pG+++ + ++Rd+kk t+ + 
  CTQ30215.1 255 YIGISGREIAPlhaqgggidqIQGIVVNDVAPDGPAAQAGIRANDVIISVNDKPAVSALETMDQVAEIRPGSEIPVVIMRDDKKITLHIA 344
                 677777777777777777777789**************************************************************9986 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.52   1.5e+03      45      55 ..     147     157 ..     144     167 .. 0.84
   2 ?   -3.4   0.0       4.2   1.3e+04       9      29 ..     173     192 ..     170     201 .. 0.66
   3 !   47.1   1.5   7.7e-16   2.3e-12       8      81 ..     252     332 ..     245     333 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.52
                 STTEEEEEETT CS
         PDZ  45 kvGDkIlsvNg 55 
                 ++GD++l++++
  CTQ30215.1 147 HIGDVVLAIGN 157
                 78*******98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.2
                 TSESSEEEEEETTSSSSSSEE CS
         PDZ   9 rgglGfslkggsdqrgdkgif 29 
                 +g++G++  g ++   ++ + 
  CTQ30215.1 173 TGRIGLNPTGRQNFL-QTDAS 192
                 578899988888764.44444 PP

  == domain 3  score: 47.1 bits;  conditional E-value: 7.7e-16
                 TTSESSEEEEEETTSS.......SSSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTS.HHHHHHHHHHTTTSEEEEEE CS
         PDZ   8 grgglGfslkggsdqr.......gdkgifvsevlpggaaeadglkvGDkIlsvNgvdvenv.sheeavqaikgskgkvtLti 81 
                  rg++G+s+++    +       + +gi+v++v p+g+a+++g++++D+I+svN+++ ++  + +++v++i++ + +++++i
  CTQ30215.1 252 IRGYIGISGREIAPLHaqgggidQIQGIVVNDVAPDGPAAQAGIRANDVIISVNDKPAVSAlETMDQVAEIRPGS-EIPVVI 332
                 689999999999998899999999************8888888************7655544**********997.888887 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.3      0.83   2.5e+03      18      27 ..     148     157 ..     148     157 .. 0.86
   2 !   38.0   0.8   3.5e-13   1.1e-09       1      36 [.     280     314 ..     280     334 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.83
       PDZ_6  18 vGDiilsvNG 27 
                 +GD++l++++
  CTQ30215.1 148 IGDVVLAIGN 157
                 59*****975 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 3.5e-13
       PDZ_6   1 vVtaVdpgsPAdrAGlrvGDiilsvNGqp.veglsla 36 
                 vV  V p++PA++AG+r++D+i+svN++p v    l+
  CTQ30215.1 280 VVNDVAPDGPAAQAGIRANDVIISVNDKPaV--SALE 314
                 699**************************76..3333 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.062   1.8e+02      47      69 ..      75      97 ..      57     101 .. 0.83
   2 ?    8.5   0.5   0.00023       0.7     625     651 ..     186     213 ..     178     227 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.062
                   TTEE-EE-STT-EEEE-HHHHHH CS
  Peptidase_S46 47 ggCtasfVSpeGLvlTNHHCayg 69
                      ++ +  ++G +lTN H++ +
     CTQ30215.1 75 TLGSGVIMDQRGYILTNKHVIND 97
                   567999*************9865 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00023
                    EE.ES----TT-TT-EEE-TTS-EEEEE CS
  Peptidase_S46 625 fl.stnDitGGNSGSPvlngkgelvGla 651
                    fl +++ i  GNSG +++n+ gel G++
     CTQ30215.1 186 FLqTDASINHGNSGGALVNSLGELMGIN 213
                    5526778999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2654.97
//
Query:       CTQ30216.1  [L=236]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-07   30.2   0.8     0.0011   18.6   0.1    3.2  2  CitG      ATP:dephospho-CoA triphosphoribosyl transferase


Domain annotation for each model (and alignments):
>> CitG  ATP:dephospho-CoA triphosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.1   0.00077        14      94     130 ..      91     127 ..      86     130 .. 0.89
   2 !   18.6   0.1   6.4e-08    0.0011     172     265 ..     128     210 ..     127     225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.00077
                 HHHHTTTTS-.......SHHHHHHHHHHHHHT--HHH CS
        CitG  94 gllaaaagrraaeeeeasleelveeaaevlaeltved 130
                 gll++aag   a++   + ++l++ a+++++++ + d
  CTQ30216.1  91 GLLCMAAGALSARQLPLTHNRLCDVAGQFARAIPEGD 127
                 8*******99889999999***********9997765 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 6.4e-08
                 HHHHHTSHHHHHHHH........HH-SSHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH..........H-SHHHHHHHHHHHHHHT- CS
        CitG 172 geaasgFpsvfeialpalrealasgadlndalvqallallaelpDtnilrrgGaegaeevqeeArallaaggvaaeaglealeeldrelverni 265
                 +ea sgF +v+ + lp++r+ ++ +++ +  l+qall+lla             +   +++++A++ll +ggv  e+g+ al  ld+el+er+i
  CTQ30216.1 128 EEAGSGFYTVRSVSLPVYRRLRRDNHSHSVCLQQALLHLLAWK-----------SESPWARQQAQRLLWQGGVLGEKGEFALLTLDDELRERQI 210
                 6999*****************9999***************974...........45678999***********9999**************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1834.65
//
Query:       CTQ30217.1  [L=28]
Description: hypothetical protein CH1034_300325 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-08   33.5   1.8    2.4e-08   33.4   1.8    1.0  1  OAD_beta  Na+-transporting oxaloacetate decarboxylase beta su


Domain annotation for each model (and alignments):
>> OAD_beta  Na+-transporting oxaloacetate decarboxylase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   1.8   1.3e-12   2.4e-08     325     348 ..       1      24 [.       1      25 [. 0.95

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.3e-12
    OAD_beta 325 mhamgpnvaGvigsavaagvllal 348
                 mhamgpnvaGvigsa+aagv+l++
  CTQ30217.1   1 MHAMGPNVAGVIGSAIAAGVMLKY 24 
                 9********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (28 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      134  (0.00747392); expected 358.6 (0.02)
Passed Vit filter:                         5  (0.000278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 222.08
//
Query:       CTQ30218.1  [L=269]
Description: Oxaloacetate decarboxylase alpha chain (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-38  132.8   0.0    1.7e-38  132.3   0.0    1.1  1  PYC_OADA         Conserved carboxylase domain
    3.5e-18   65.2   0.3    3.5e-18   65.2   0.3    1.9  2  Biotin_lipoyl    Biotin-requiring enzyme
      1e-11   44.5   2.0    1.3e-06   28.2   0.0    3.1  3  Biotin_lipoyl_2  Biotin-lipoyl like
      8e-06   26.5   0.6      0.096   13.4   0.0    2.6  2  HlyD_3           HlyD family secretion protein
    7.5e-05   22.1   0.5       0.23   10.7   0.0    2.3  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
     0.0021   17.8   0.3        6.2    6.6   0.0    3.2  3  PTS_EIIA_1       phosphoenolpyruvate-dependent sugar phosphot
     0.0034   17.5   0.1     0.0089   16.2   0.1    1.7  1  Peptidase_M23    Peptidase family M23
  ------ inclusion threshold ------
       0.12   12.7   0.0       0.26   11.6   0.0    1.6  1  FliO             Flagellar biosynthesis protein, FliO
        0.3   11.4   1.3         32    4.9   0.0    3.0  3  Siah-Interact_N  Siah interacting protein, N terminal


Domain annotation for each model (and alignments):
>> PYC_OADA  Conserved carboxylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.3   0.0   8.7e-42   1.7e-38      38     195 ..       2     164 ..       1     166 [. 0.84

  Alignments for each domain:
  == domain 1  score: 132.3 bits;  conditional E-value: 8.7e-42
                 HHHTT----STTHHHHHHHHHHHHHHH........TS.TTSS--HHHHHHHTTSS---SS---HHHHHHHHT.-----S-GGGG---.-HHHHHHHTTT CS
    PYC_OADA  38 nkllGdivkVTPsSkvvgdlAvfnvlnklteedvleegrykdipdsvvdllkGelGkppggfpeelvkkvlkgeepitsrpadslepedleklrkelee 136
                 +++lG+i++VTP+S++vg++Av+nvl         +e ryk+i+++++++lkGe+G++p++++++l+++vl+g  p+t+rpad+l+p +l++l++++++
  CTQ30218.1   2 REDLGFIPLVTPTSQIVGTQAVLNVLG--------GE-RYKTIAKETAGILKGEYGRTPAPVNAALQARVLDGADPVTCRPADLLKP-ELAQLEADVKR 90 
                 89*************************........86.*************************************************.*********** PP

                 TSSSH.........HHHHHHHHSHHHHHHHHHHHHHHHHHH..CTTTS............-SEEEEEETTEEEE CS
    PYC_OADA 137 kakte.........edvlsyalypkvaekflkfreeygdvsvlptkvffeglkv......geeveveveggkyl 195
                 +a+++         +dvl++al+p+++ kfl++r++   ++ +p+ +  +  ++      +  ++veveg+ ++
  CTQ30218.1  91 QAQEKgitlaenaiDDVLTVALFPQIGLKFLENRHNPAAFEPVPQAEAAQPVAKaekpaaSGVYTVEVEGKAFV 164
                 99744444555567*********************5555544444444433332233444899******99876 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.3   2.6e+03      14      28 ..     159     174 ..     148     177 .. 0.66
   2 !   65.2   0.3   1.7e-21   3.5e-18       4      73 .]     204     268 ..     200     268 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.3
                    E..ECSESSSTTCEE- CS
  Biotin_lipoyl  14 eg.vvevlvkvGdkVk 28 
                    eg    v+v++G+ V+
     CTQ30218.1 159 EGkAFVVKVSDGGDVS 174
                    4455567777777776 PP

  == domain 2  score: 65.2 bits;  conditional E-value: 1.7e-21
                    EESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl   4 ksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73 
                    ++P +G++ +     vl ++G++V+ag+vl+++eamKme+ei a +aG+v  i vk Gd+v vgd l+++
     CTQ30218.1 204 NAPLAGTIWK-----VLAAEGQTVAAGEVLLILEAMKMETEIRAAQAGTVRGIAVKAGDAVAVGDTLMTL 268
                    5666666666.....****************************************************986 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.3   2.5e+03      41      50 .]      80      89 ..      74      89 .. 0.78
   2 !   28.2   0.0   6.3e-10   1.3e-06       4      48 ..     202     246 ..     199     246 .. 0.96
   3 !   19.6   0.2   2.9e-07   0.00058       4      33 ..     239     268 ..     237     269 .] 0.95

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.3
  Biotin_lipoyl_2 41 alaqaeaqla 50
                     +laq+ea+++
       CTQ30218.1 80 ELAQLEADVK 89
                     799**99975 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 6.3e-10
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaq 48 
                      ++ ap++G++ +++  +Gq V aG vL++l+  + +++++ a+a+
       CTQ30218.1 202 PVNAPLAGTIWKVLAAEGQTVAAGEVLLILEAMKMETEIRAAQAG 246
                      799***************************************995 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 2.9e-07
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGdvLael 33 
                      +I a ++G+V  ++Vk G+ V  Gd+L++l
       CTQ30218.1 239 EIRAAQAGTVRGIAVKAGDAVAVGDTLMTL 268
                      7999***********************998 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.8e-05     0.096       2      28 ..     203     229 ..     202     237 .. 0.92
   2 !   10.9   0.1   0.00029      0.58       2      30 ..     240     268 ..     239     269 .] 0.95

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.8e-05
      HlyD_3   2 lrApvdGvvvelnveegevvqagdell 28 
                 ++Ap +G+++++ + eg+ v+ag++ll
  CTQ30218.1 203 VNAPLAGTIWKVLAAEGQTVAAGEVLL 229
                 79***********************98 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00029
      HlyD_3   2 lrApvdGvvvelnveegevvqagdellei 30 
                 +rA  +G+v  + v++g+ v+ gd+l+++
  CTQ30218.1 240 IRAAQAGTVRGIAVKAGDAVAVGDTLMTL 268
                 89*************************97 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00012      0.23     109     140 ..     201     232 ..     190     236 .. 0.87
   2 !   10.0   0.2   0.00018      0.37     106     140 ..     235     269 .]     232     269 .] 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 109 vtvkapisGvVteknvreGqyvqpgdtlftia 140
                 ++v+ap++G++ +  ++eGq+v +g++l+ + 
  CTQ30218.1 201 TPVNAPLAGTIWKVLAAEGQTVAAGEVLLILE 232
                 6899*********************9998665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00018
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 106 qktvtvkapisGvVteknvreGqyvqpgdtlftia 140
                 + +++++a ++G+V   +v  G+ v  gdtl+t+a
  CTQ30218.1 235 KMETEIRAAQAGTVRGIAVKAGDAVAVGDTLMTLA 269
                 567899*************************9986 PP

>> PTS_EIIA_1  phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.1    0.0052        10      73      96 ..     152     175 ..     149     179 .. 0.91
   2 !    6.6   0.0    0.0031       6.2      79     110 ..     207     238 ..     203     248 .. 0.86
   3 ?    1.6   0.0      0.11   2.2e+02      86     102 ..     251     267 ..     242     269 .] 0.85

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0052
                 SSSTTTTTTTTEEES----SEE-S CS
  PTS_EIIA_1  73 GidtvklkgegFellvkegdkVka 96 
                 G+ tv+++g+ F ++v++g  V++
  CTQ30218.1 152 GVYTVEVEGKAFVVKVSDGGDVSQ 175
                 899****************99975 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0031
                 TTTTTEEES----SEE-SEEEEEEE-HHHHGG CS
  PTS_EIIA_1  79 lkgegFellvkegdkVkagdklvevdleaikk 110
                 l g+ +++l++eg++V ag+ l+ ++  +++ 
  CTQ30218.1 207 LAGTIWKVLAAEGQTVAAGEVLLILEAMKMET 238
                 789999****************9888777765 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.11
                 ES----SEE-SEEEEEE CS
  PTS_EIIA_1  86 llvkegdkVkagdklve 102
                 + vk+gd V  gd+l++
  CTQ30218.1 251 IAVKAGDAVAVGDTLMT 267
                 679***********997 PP

>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   4.5e-06    0.0089      10      69 ..     197     265 ..     190     268 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.5e-06
                    ETTT-EEEESSSEEE..EEEEE.ET.TTEEEEEEEECTCEEEEEEEESEES.....S-TTEEE-TTCEE CS
  Peptidase_M23  10 apkgtpVlAaadGtV..vfagk.ke.gyGnvviidhgdgystlyahlskis.....vkegqkVkaGqvI 69 
                    a +gtpV A+ +Gt+  v a + ++ ++G+v++i  + +++t +   ++ +     vk+g+ V+ G+++
     CTQ30218.1 197 AGAGTPVNAPLAGTIwkVLAAEgQTvAAGEVLLILEAMKMETEIRAAQAGTvrgiaVKAGDAVAVGDTL 265
                    4579***********7733333233366*******9999888887776644335558888888888875 PP

>> FliO  Flagellar biosynthesis protein, FliO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00013      0.26      33      77 ..     151     196 ..     133     213 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
        FliO  33 ervvlVevgeellllGvtp.gsislLheltkaeapeppsaeeapap 77 
                 + v+ Vev+++ +++ v++ g++s L+    a+a +p+sa++a+ap
  CTQ30218.1 151 SGVYTVEVEGKAFVVKVSDgGDVSQLTAAAPAPASAPASAPAAAAP 196
                 5699**************9669*******99999998888877766 PP

>> Siah-Interact_N  Siah interacting protein, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.016        32      26      47 ..      74      95 ..      71     111 .. 0.78
   2 ?   -1.1   0.1       1.2   2.4e+03      56      72 ..     140     152 ..     125     158 .. 0.54
   3 ?    3.8   0.0     0.037        73      28      43 ..     228     243 ..     224     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.016
  Siah-Interact_N 26 kdlLsaeirKleteilklkekq 47
                      dlL+ e + le +++++ +++
       CTQ30218.1 74 ADLLKPELAQLEADVKRQAQEK 95
                     59*************6555544 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.2
  Siah-Interact_N  56 q.lleeekpaasvapitk 72 
                      q +++ ekpaas      
       CTQ30218.1 140 QpVAKAEKPAAS-----G 152
                      123445555554.....4 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.037
  Siah-Interact_N  28 lLsaeirKleteilkl 43 
                      lL +e  K+etei + 
       CTQ30218.1 228 LLILEAMKMETEIRAA 243
                      6889*********443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2132.34
//
Query:       CTQ30219.1  [L=80]
Description: putative oxaloacetate decarboxylase gamma chain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-16   60.9   0.2    1.6e-16   60.6   0.2    1.1  1  OAD_gamma        Oxaloacetate decarboxylase, gamma chain
      0.006   16.2   1.8     0.0089   15.6   1.8    1.2  1  RhodobacterPufX  Intrinsic membrane protein PufX
  ------ inclusion threshold ------
       0.63    9.1   3.4       0.73    8.9   3.4    1.0  1  ABC2_membrane_3  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> OAD_gamma  Oxaloacetate decarboxylase, gamma chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.2   2.8e-20   1.6e-16       2      77 .]      10      76 ..       9      76 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 2.8e-20
   OAD_gamma  2 egllltllGmgvVFvvLilLslvislfskiikkkakkkkkkakaaaaaaaaaaaaaeldddeelvAvIaaAiaaye 77
                eg++l++lGmg+V+v+L+lL+++i+ +s  +++ ++++ ++a+aa a+a         dd ++l  +I+aAi++++
  CTQ30219.1 10 EGFTLMFLGMGFVLVFLLLLIFAIRGMSLAVNRLFPEPSAAAPAAVAPA---------DDFARLKPAIVAAIHHHR 76
                8*************************************99999998887.........9***************97 PP

>> RhodobacterPufX  Intrinsic membrane protein PufX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.8   1.5e-06    0.0089      22      62 ..      13      54 ..      10      59 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.5e-06
  RhodobacterPufX 22 llMlkGAgyAavfvlvllfllvalal.iGrlLPeqsrqtPdP 62
                      lM  G g+  vf+l l+f + ++ l + rl Pe s  +P+ 
       CTQ30219.1 13 TLMFLGMGFVLVFLLLLIFAIRGMSLaVNRLFPEPSAAAPAA 54
                     58*********************99846899*********85 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.4   0.00012      0.73     228     271 ..      11      52 ..       5      57 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00012
  ABC2_membrane_3 228 afglgipfgnlglllllfllfglayialgyllsslfknsetaqi 271
                       f   ++f ++g++l+++ll ++a+  +++++  lf  +++a  
       CTQ30219.1  11 GFT--LMFLGMGFVLVFLLLLIFAIRGMSLAVNRLFPEPSAAAP 52 
                      455..7788****************************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 598.17
//
Query:       CTQ30220.1  [L=205]
Description: L-tartrate dehydratase, beta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-38  130.0   0.0    8.6e-38  129.7   0.0    1.0  1  Fumerase_C  Fumarase C-terminus
  ------ inclusion threshold ------
       0.12   12.7   0.1       0.28   11.5   0.0    1.7  2  Yqai        Hypothetical protein Yqai


Domain annotation for each model (and alignments):
>> Fumerase_C  Fumarase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.7   0.0   9.5e-42   8.6e-38      33     205 ..       7     181 ..       2     182 .. 0.94

  Alignments for each domain:
  == domain 1  score: 129.7 bits;  conditional E-value: 9.5e-42
  Fumerase_C  33 nqketeeelskykvgtrlllsGkllvaRDaaHkrlkerlekgeelpeyvklkdrviYyaGPv.....ktpedeavgsaGPTTatRmdkyvekllkktgl 126
                 ++++  e+l++ k+g+ + l+G++++ RD+aH+rl    e g+elp  v++ + +i +aGP+      t+++  + s+GPTT+ Rm+k+ +++++ktg+
  CTQ30220.1   7 TTPIKDEDLADIKAGDIIYLNGHIVTCRDVAHRRLI---EGGRELP--VNVAGGAILHAGPIvrpikGTEDKFEMVSVGPTTSMRMEKFEKEFIAKTGV 100
                 55677899***************************9...67*****..8888*********98888667888999************************ PP

  Fumerase_C 127 limlaKgnrskkvleaikkhggvYLgaiGGaAilakkaikkvevvefeelGm.EAiyeievedf.pafvvvddkGndlfke 205
                   +++Kg+++k + e + +h++++ +   G A++a+ +++++e  ++++lGm E ++  +v++f p +v +d++Gn+lf++
  CTQ30220.1 101 KLIVGKGGMGKGTEEGCMEHKALHCVFPAGCAVVAAVCVEEIEDAQWRDLGMpETLWVCRVKEFgPLIVSIDTHGNNLFEQ 181
                 ****************************************************************788999*********97 PP

>> Yqai  Hypothetical protein Yqai
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.98   8.8e+03      42      46 ..      21      25 ..      11      43 .. 0.62
   2 ?   11.5   0.0   3.1e-05      0.28      22      48 ..     163     196 ..     126     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.98
                TEEEE CS
        Yqai 42 geiil 46
                g+ii+
  CTQ30220.1 21 GDIIY 25
                55543 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.1e-05
                 ........--TTSS-B-TTS-EEE.ETTEEEECC CS
        Yqai  22 m.......iDayGdEivpddeyllfdngeiilke 48 
                         iD  G+ ++++++++ ++  ei+  e
  CTQ30220.1 163 EfgplivsIDTHGNNLFEQNKVIFNQRKEIVADE 196
                 35666666*********************99655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1522.39
//
Query:       CTQ30221.1  [L=299]
Description: L-tartrate dehydratase, alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-77  258.2   0.0    9.4e-77  258.1   0.0    1.0  1  Fumerase  Fumarate hydratase (Fumerase)


Domain annotation for each model (and alignments):
>> Fumerase  Fumarate hydratase (Fumerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.1   0.0   5.2e-81   9.4e-77       4     269 ..      14     281 ..      11     282 .. 0.97

  Alignments for each domain:
  == domain 1  score: 258.1 bits;  conditional E-value: 5.2e-81
    Fumerase   4 veealkeastelpedvlealkkalekEesenakevleqlleNaeiAaeeklplCqDTGiavvfvkigeevevetgdleeaineGvreaykegplRksvv 102
                 +++++ ++   lp+dv ++l+++ +kE+s++a  ++ +++eN ++A+e ++p CqDTG++ ++v++g ++    g+le+ ++e v +a+ + plR++ v
  CTQ30221.1  14 MARFVGYTGKVLPDDVTAKLQDLHKKETSQLADVIFTTMIENQRLAKELDRPSCQDTGVIQFLVECGANFP-LIGELEALLRESVIKATIDSPLRHNSV 111
                 67778888999***********************************************************5.899************************ PP

    Fumerase 103 adplerkntgd....nlPavihielvpg.deleitvlakGgGsenksklkmlnpsdglegvkkfvletvkeagtnaCpPlvlgvgiGgtseeaallakk 196
                  +++++ ntg+    ++P  + +e+vp+ d+++i +++ GgG++   k+++l+p +g+egv +fvl+ ++++g naCpPl++gvg+++++e+aall+kk
  CTQ30221.1 112 -ETFDEYNTGKnvgkGTP-TVFWEIVPNsDQCSIYTYMAGGGCSLPGKAMVLMPGAGYEGVTRFVLDVMTSYGLNACPPLLVGVGVATSVETAALLSKK 208
                 .889999999988889**.9******987********************************************************************** PP

    Fumerase 197 allrelgeenpdeelaeleeellekinklgiGpqGlGGkttvldvkierlprhiAslpvavnvsCsadRrakv 269
                 al+r++g++n++e+ a le+ l + ink+g+GpqG+ G+t v++v+ie+ +rh++++ vavnv C+++R+ ++
  CTQ30221.1 209 ALMRPIGSHNDNERAALLEKMLEDGINKIGLGPQGMSGNTSVMGVNIENTARHPSTIGVAVNVGCWSHRKGHI 281
                 *********************************************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2154.85
//
Query:       CTQ30222.1  [L=422]
Description: Divalent anion:Na+ symporter (DASS) family transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-48  164.1  51.4    1.6e-32  112.9  19.5    2.1  2  CitMHS         Citrate transporter
    1.5e-32  113.3  44.1      8e-30  104.3  44.1    3.0  1  Na_sulph_symp  Sodium:sulfate symporter transmembrane region
    4.9e-09   35.5  47.5    3.4e-08   32.7  19.9    2.1  2  DctM           Tripartite ATP-independent periplasmic transpo
  ------ inclusion threshold ------
        0.6   10.2   2.8        1.1    9.3   0.2    2.7  3  OCIA           Ovarian carcinoma immunoreactive antigen (OCIA


Domain annotation for each model (and alignments):
>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9  19.5   3.6e-36   1.6e-32       1     230 [.      15     241 ..      15     247 .. 0.88
   2 !   58.6  24.6   1.2e-19   5.4e-16       3     166 ..     237     418 ..     235     421 .. 0.81

  Alignments for each domain:
  == domain 1  score: 112.9 bits;  conditional E-value: 3.6e-36
                 xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS   1 lvllileklrldvvallvlvll....vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrdllvllvlltallsafvsndgvv 95 
                 ++++++ek++l+v++++v v+l    vl++++a++g+  + ++l+++++i+g+al etG+++ ++  +  +a++ ++l+++++++++++s+f+sn+g++
  CTQ30222.1  15 IIMFVWEKVPLAVTSMVVCVALvltgVLDLKQAFAGFIDSNVILFVAMFIVGGALFETGMANKVGGVITHFAKTEKQLIFIIMVVVGVMSGFLSNTGTA 113
                 689**********************************************************************9666********************** PP

                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxx RF
      CitMHS  96 limipivlslakrlkklppl.lliplalaaniggaltpiGtpttraaarpglslpnlll....................lalllvgllplvllfmfgva 173
                 +++ip+v+ +a++ +++ ++ ll+pl++aa++gg l++iG p             nl++                    l++l+ g+l++++++     
  CTQ30222.1 114 AVLIPVVIGVAAK-SGFTRSrLLMPLVFAAALGGNLSLIGAP------------GNLIAqsalqnigsgfgffeyakvgLPMLVCGILYFLTIG----- 194
                 ************9.8888888*********************............99999999999999*********9999999**********..... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 174 lalpvnapkvkkqkaiieaiarsllpv.atilllaykkveWsvlllfaGvfllvgale 230
                 +++++n  +  +   i e+   s +p    il         s+++l+a ++++  ++e
  CTQ30222.1 195 YKFLPNNSNSSEVGSIGEQRDYSHVPRwKQIL---------SLVVLIATILGM--IFE 241
                 88888888666666666655554444313444.........556788888888..554 PP

  == domain 2  score: 58.6 bits;  conditional E-value: 1.2e-19
                 xxxxxx...xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx..xxxxxxxxxxxxxx RF
      CitMHS   3 llilek...lrldvvallvlvll....vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvl..lvlltallsafvsn 91 
                  +i+ek   ++l+v+  +++++l    vlt ++a+++i+s++i++++g   +++ale tG+ + +a+ ++ l g++    ++l  +++l+++++ f+sn
  CTQ30222.1 237 GMIFEKqtgISLTVAGCIGALVLvitgVLTEKQAYKAIDSQTIFIFGGTLALAKALEMTGAGKLVADQVIGLLGNNSSpFMLLvvVFALSVVMTNFMSN 335
                 589999999999999999999999**************************************************9887554444466677777789999 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  92 dgvvlimipivlslakrlkklppllliplalaaniggaltpiGtpttraa.........arpglslpnllllalllvgllplvl 166
                 +++v++++p+ ls+a+ ++ +p+++l++ +++++  + +tpiG p  +++         +  +  +p +++  ++  +llp+++
  CTQ30222.1 336 TATVALLVPVSLSIAAGMGADPRAVLMATVIGSSCAY-ATPIGMPANMMVlsaggykfvDYAKSGIPLIIVSTIVSLILLPILF 418
                 999**********************************.*******666667777777742223333333333333333344433 PP

>> Na_sulph_symp  Sodium:sulfate symporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3  44.1   1.8e-33     8e-30      34     461 ..       8     413 ..       4     418 .. 0.85

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 1.8e-33
  Na_sulph_symp  34 laifiaaivglileplplavialialsllavligvlaakalsevlsgfssdttlLvfaalliaaavektgLgkRiAlvlvkivGkrtliLgyalvl 129
                    l  +++ai++++ e +plav++++    l vl+gvl    l+++ +gf ++ ++L++a ++++ a+  tg+ +++   ++  + k+   L + +++
     CTQ30222.1   8 LCLLVFAIIMFVWEKVPLAVTSMVVCVAL-VLTGVLD---LKQAFAGFIDSNVILFVAMFIVGGALFETGMANKVGG-VITHFAKTEKQLIFIIMV 98 
                    567899****************9876666.8999999...9**********************************96.577788888999998888 PP

  Na_sulph_symp 130 adlllapatpsntAraggivfpvikslssafgsepekqserkigaylmltvvqsasitsiaflTamApNllllglinsilgveitwasWflaaipt 225
                    +  +++ +  snt  a+  + pv+ ++++   s +  +  r     l++  v +a +++   l ++ +Nl++++ ++   g    + +++++  ++
     CTQ30222.1  99 VVGVMSGFL-SNTGTAAVLI-PVVIGVAAK--SGFTRS--R-----LLMPLVFAAALGGNLSLIGAPGNLIAQSALQ-NIGSGFGFFEYAKVG-LP 181
                    888888765.7777666666.998888664..555552..3.....6777778889999999************999.679999****99875.56 PP

  Na_sulph_symp 226 gvillllvplllyvlyppeikkkeeakavaktelkelGpltarekallilfvll.lllWifgeslnidattvaivvlvillllrvldWkDivkqkt 320
                    ++++ +l  l +   ++p++ ++ e+  + +++      + + +++l+++++++ +l+ if+++ +i+ t+ + ++  +l+++ vl+ k    +  
     CTQ30222.1 182 MLVCGILYFLTIGYKFLPNNSNSSEVGSIGEQRDYSH--VPRWKQILSLVVLIAtILGMIFEKQTGISLTVAGCIGALVLVITGVLTEK-QAYKAI 274
                    7788888888888889999999988888876655444..44555666666665427889******************************.555566 PP

  Na_sulph_symp 321 aWntllllgglialakllersgliewlgnklttsls.glspavaiiiilslfvlvhylfaSatAttaallpillavaqaipgappllvalllalat 415
                      +t++++gg +alak le +g  + ++++++++l  + sp ++++++ +++ +v + f S+tAt+a l+p+ l++a ++ ga+p  v ++ ++ +
     CTQ30222.1 275 DSQTIFIFGGTLALAKALEMTGAGKLVADQVIGLLGnNSSPFMLLVVV-FALSVVMTNFMSNTATVALLVPVSLSIAAGM-GADPRAVLMATVIGS 368
                    779*********************************555566655555.555567899**********************.999999999999999 PP

  Na_sulph_symp 416 slagfllpyatgpnpivfgagylkvkdywrlGfilsiigllillll 461
                    s a   +p++ ++n++v++ag  k  dy+++G++l i++ ++ l+l
     CTQ30222.1 369 SCA-YATPIGMPANMMVLSAGGYKFVDYAKSGIPLIIVSTIVSLIL 413
                    999.***********************************9998875 PP

>> DctM  Tripartite ATP-independent periplasmic transporter, DctM component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9  19.6   0.00013       0.6     222     367 ..       7     144 ..       2     154 .. 0.82
   2 !   32.7  19.9   7.6e-12   3.4e-08     217     409 ..     221     413 ..     173     420 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00013
        DctM 222 lpliiligillgiftpteagavavvyalviallvyrrltleevaaallstakttaavlfilaaagifaglltltgvplklselllslsggkllfLilvn 320
                 ++ +++++i++ ++ +   ++ ++v + ++ l  ++ l+l++ +a+++++  +  + +fi+ +a      l  tg++ k++ ++++ ++++  ++ +++
  CTQ30222.1   7 TLCLLVFAIIMFVWEKVPLAVTSMVVCVALVL--TGVLDLKQAFAGFIDSNVILFVAMFIVGGA------LFETGMANKVGGVITHFAKTEKQLIFIIM 97 
                 44556667778888888777777777655554..599************998888888888776......556789***************98999999 PP

        DctM 321 llvlvlGmfldttaaiiilvpilaPaaaklgidpihfgvvivlnlsi 367
                 ++v v+  fl+ t ++ +l p+++ +aak g+ +  + + +v+++++
  CTQ30222.1  98 VVVGVMSGFLSNTGTAAVLIPVVIGVAAKSGFTRSRLLMPLVFAAAL 144
                 9999***************************9987777776666655 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 7.6e-12
        DctM 217 ipalllpliiligillgi....ftpteagavavvyalviallvyrrltleevaaallstakttaavlfilaaagifaglltltgvplklselllslsgg 311
                  +  +l l++li+ +lg+     t +   +++ ++alv+ +  ++ lt ++ ++a+ s +      +fi  +  ++a +l +tg++  +++ +++l g+
  CTQ30222.1 221 RWKQILSLVVLIATILGMifekQTGISLTVAGCIGALVLVI--TGVLTEKQAYKAIDSQT------IFIFGGTLALAKALEMTGAGKLVADQVIGLLGN 311
                 34666777777777777633225555555566666666554..58999999998877654......79999*************************999 PP

        DctM 312 k...llfLilvnllvlvlGmfldttaaiiilvpilaPaaaklgidpihfgvvivlnlsiglitPPvGlalfvassiak.vsveeivkalvPflvvlvva 406
                 +   +++L++v +l+ v+  f++ ta++ +lvp+ + +aa +g dp ++ +  v+  s +++t P+G+ + ++   a   ++++  k  +P ++v  ++
  CTQ30222.1 312 NsspFMLLVVVFALSVVMTNFMSNTATVALLVPVSLSIAAGMGADPRAVLMATVIGSSCAYAT-PIGMPANMMVLSAGgYKFVDYAKSGIPLIIVSTIV 409
                 8887889999999999********************************999999999999999.6*****99988885599**********99886655 PP

        DctM 407 .lvl 409
                  l+l
  CTQ30222.1 410 sLIL 413
                 1444 PP

>> OCIA  Ovarian carcinoma immunoreactive antigen (OCIA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2   0.00025       1.1      24      69 ..      21      67 ..      17      81 .. 0.77
   2 ?   -2.8   0.1       1.5   6.8e+03      32      48 ..      94     110 ..      91     125 .. 0.67
   3 ?   -1.0   0.0      0.41   1.8e+03      28      54 ..     248     274 ..     241     286 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00025
        OCIA 24 rslPlsavsmlvtyllvkkgvLkasprfgslpKvalagvlg.ylvGk 69
                  +Pl+++sm+v  +lv +gvL  ++ f  +   ++  +++ ++vG 
  CTQ30222.1 21 EKVPLAVTSMVVCVALVLTGVLDLKQAFAGFIDSNVILFVAmFIVGG 67
                569************************99888777666554255565 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
        OCIA  32 smlvtyllvkkgvLkas 48 
                 +++++ ++v +g+L++ 
  CTQ30222.1  94 FIIMVVVGVMSGFLSNT 110
                 56666777788888765 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.41
        OCIA  28 lsavsmlvtyllvkkgvLkasprfgsl 54 
                 l++   +++ +lv +gvL++++ + ++
  CTQ30222.1 248 LTVAGCIGALVLVITGVLTEKQAYKAI 274
                 555566788899999999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1202  (0.0670422); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 2817.39
//
Query:       CTQ30223.1  [L=221]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-22   78.7   7.4    8.5e-22   77.9   7.4    1.4  1  FCD         FCD domain
    3.7e-14   52.1   0.7    1.2e-13   50.4   0.8    1.9  2  GntR        Bacterial regulatory proteins, gntR family
     0.0016   18.4   0.2        1.1    9.3   0.1    2.9  2  HTH_15      Helix-turn-helix domain of alkylmercury lyase
  ------ inclusion threshold ------
      0.014   15.2   0.4       0.26   11.1   0.0    2.8  3  HTH_DeoR    DeoR-like helix-turn-helix domain
      0.018   14.6   0.2        0.1   12.2   0.1    2.3  3  HTH_24      Winged helix-turn-helix DNA-binding
      0.078   13.3   0.0       0.36   11.1   0.0    2.0  2  Mnd1        Mnd1 HTH domain
       0.15   11.6   1.7       0.46   10.1   0.1    2.5  3  Sigma70_r4  Sigma-70, region 4


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   7.4   3.3e-25   8.5e-22       1     123 [.      86     204 ..      86     206 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 3.3e-25
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlalssperleeslae 99 
                 + ye+Ra+LE+ea++ a r +td  + ++ +++ a e+a a+++ +e++++++aFH+ + +aagn+ ++ ll ++++ l + ++ +   +e +  s++e
  CTQ30223.1  86 EHYEIRAVLESEAVAKASRPGTD--ISRIAHVHYAAEKALADNNSAEYSDLNQAFHMEIWSAAGNEKMKMLLCNMWNGLSMGHKVT--EEEYAVISIRE 180
                 579******************98..*******************************************************887776..9********** PP

         FCD 100 HraildAirardadaAraamrrHl 123
                 H+ail+A+++++++ Ar+ m++H+
  CTQ30223.1 181 HKAILQALEQHNEALARQRMHEHI 204
                 ***********************9 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.8   4.8e-17   1.2e-13       2      64 .]      15      76 ..      14      76 .. 0.98
   2 ?   -2.9   0.0       2.2   5.6e+03      34      43 ..      77      86 ..      77      89 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 4.8e-17
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                +eqv++ Lr  Ils  l  G+ + + + +a   gVs ++vReA + L+a+gl+++r+++G++V
  CTQ30223.1 15 KEQVAAVLRKAILSRDLVEGQEI-TLEGIARLVGVSSMPVREAFQILAADGLIQVRPNKGAVV 76
                68*********************.************************************998 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.2
                HTS-HHHHHH CS
        GntR 34 fgVsrttvRe 43
                +g++ +t+Re
  CTQ30223.1 77 LGINEQTIRE 86
                5888999998 PP

>> HTH_15  Helix-turn-helix domain of alkylmercury lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00042       1.1      21      57 ..      21      58 ..      11      64 .. 0.77
   2 !    5.9   0.0    0.0049        12       4      59 ..     136     191 ..     133     194 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00042
      HTH_15 21 ellrpLl.rlLakGepVtveeLAaatgrsveevrqaLa 57
                 l  ++l r L++G+ +t+e++A  +g s   vr+a +
  CTQ30223.1 21 VLRKAILsRDLVEGQEITLEGIARLVGVSSMPVREAFQ 58
                4555555388****************999888887754 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0049
      HTH_15   4 tqlseslakgeeggssaellrpLlrlLakGepVtveeLAaatgrsveevrqaLaal 59 
                 + ++ ++ +     +++ ll  + + L  G+ Vt ee A +  r    + qaL++ 
  CTQ30223.1 136 QAFHMEIWSAAGNEKMKMLLCNMWNGLSMGHKVTEEEYAVISIREHKAILQALEQH 191
                 556666667777889999**************************999999999986 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.26       9      44 ..      31      66 ..      23      77 .. 0.84
   2 ?   -0.1   0.0      0.31   7.9e+02      23      32 ..      76      85 ..      67      86 .. 0.88
   3 ?   -0.1   0.1      0.31   7.8e+02       2      13 ..     181     192 ..     181     198 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
    HTH_DeoR  9 lkqqgklsveelvellgvSeaTiRRDLneLeeqgll 44
                l + + +++e ++ l gvS + +R  +++L+++gl+
  CTQ30223.1 31 LVEGQEITLEGIARLVGVSSMPVREAFQILAADGLI 66
                5667889***************************97 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.31
    HTH_DeoR 23 llgvSeaTiR 32
                 lg+ e+TiR
  CTQ30223.1 76 VLGINEQTIR 85
                68999****9 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.31
    HTH_DeoR   2 ieqilellkqqg 13 
                 +++il+ l+q+ 
  CTQ30223.1 181 HKAILQALEQHN 192
                 789*******97 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.9e-05       0.1      16      48 .]      35      67 ..      22      67 .. 0.87
   2 ?   -2.1   0.0       1.2     3e+03      26      37 ..      76      87 ..      74      88 .. 0.84
   3 ?   -1.7   0.0      0.85   2.2e+03       6      15 ..     182     191 ..     181     194 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.9e-05
      HTH_24 16 prisqreLAerlglSpstvnrrlkrLeeeGlIk 48
                  i+   +A+ +g+S+ +v++  + L  +GlI+
  CTQ30223.1 35 QEITLEGIARLVGVSSMPVREAFQILAADGLIQ 67
                5689999************************95 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
      HTH_24 26 rlglSpstvnrr 37
                 lg+  +t++++
  CTQ30223.1 76 VLGINEQTIREH 87
                589*****9987 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.85
      HTH_24   6 rkILelLqkn 15 
                 ++IL++L+++
  CTQ30223.1 182 KAILQALEQH 191
                 6899999985 PP

>> Mnd1  Mnd1 HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00014      0.36      25      47 ..      46      68 ..      35      69 .. 0.86
   2 ?   -1.6   0.0       1.3   3.4e+03      26      35 ..      78      87 ..      74      90 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
        Mnd1 25 kgivsqsVkdvlqsLvdDglvev 47
                 g++s+ V++  q L +Dgl++v
  CTQ30223.1 46 VGVSSMPVREAFQILAADGLIQV 68
                79*******************86 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
        Mnd1 26 givsqsVkdv 35
                gi++q+++++
  CTQ30223.1 78 GINEQTIREH 87
                89*****997 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00018      0.46      12      38 ..      25      54 ..      10      56 .. 0.80
   2 ?   -0.9   0.0      0.48   1.2e+03      29      39 ..      76      86 ..      74      89 .. 0.82
   3 ?   -2.8   0.1       1.9   4.8e+03      37      45 ..     176     184 ..     174     186 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00018
                HHHHHH...TTT--HHHHHHHHTS-HHHHH CS
  Sigma70_r4 12 vlelrf...geglTleEIgerlgiSrerVr 38
                 +  r    g++ Tle I++  g+S + Vr
  CTQ30223.1 25 AILSRDlveGQEITLEGIARLVGVSSMPVR 54
                4444448889****************9998 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.48
                HHTS-HHHHHH CS
  Sigma70_r4 29 rlgiSrerVrq 39
                +lgi + ++r 
  CTQ30223.1 76 VLGINEQTIRE 86
                79*******96 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.9
                 HHHHHHHHH CS
  Sigma70_r4  37 VrqiekrAl 45 
                 ++ +e++A+
  CTQ30223.1 176 ISIREHKAI 184
                 678999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1639.98
//
Query:       CTQ30224.1  [L=209]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-17   60.8   0.4    1.2e-16   60.1   0.4    1.4  1  GntR           Bacterial regulatory proteins, gntR family
    3.9e-07   29.5   0.0    1.1e-06   28.1   0.0    1.8  1  HTH_24         Winged helix-turn-helix DNA-binding
    3.4e-05   23.6   1.0    0.00052   19.8   0.1    2.9  3  HTH_IclR       IclR helix-turn-helix domain
      7e-05   22.7   0.3    0.00058   19.8   0.1    2.4  2  HTH_Crp_2      Crp-like helix-turn-helix domain
    0.00013   21.8   0.0    0.00033   20.6   0.0    1.7  1  HTH_11         HTH domain
    0.00018   21.0   0.2    0.00081   18.9   0.1    2.3  2  Sigma70_r4     Sigma-70, region 4
    0.00034   21.1   0.3    0.00072   20.0   0.3    1.7  1  FCD            FCD domain
    0.00035   20.4   0.1     0.0011   18.9   0.0    1.9  2  MarR           MarR family
    0.00054   19.8   0.0     0.0011   18.8   0.0    1.5  1  TrmB           Sugar-specific transcriptional regulator TrmB
     0.0011   19.3   0.2      0.008   16.5   0.0    2.3  2  FaeA           FaeA-like protein
     0.0039   17.1   0.0      0.024   14.6   0.0    2.3  3  HTH_36         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.028   14.2   0.0    1.8  1  HTH_DeoR       DeoR-like helix-turn-helix domain
      0.012   15.5   0.4      0.044   13.7   0.0    2.1  2  MarR_2         MarR family
      0.016   14.5   0.1      0.029   13.7   0.1    1.4  1  EAP30          EAP30/Vps36 family
      0.017   15.1   0.0      0.053   13.5   0.0    1.9  1  HTH_29         Winged helix-turn helix
      0.019   15.1   0.0      0.065   13.4   0.0    1.9  1  HTH_28         Helix-turn-helix domain
      0.035   13.9   0.3      0.094   12.6   0.1    1.9  2  HTH_AsnC-type  AsnC-type helix-turn-helix domain
      0.039   14.3   0.1       0.26   11.7   0.1    2.2  2  Rrf2           Transcriptional regulator
        0.1   12.7   0.0       0.28   11.3   0.0    1.7  1  HTH_54         ParA helix turn helix domain
       0.12   12.2   0.4       0.44   10.4   0.1    2.2  2  HTH_23         Homeodomain-like domain


Domain annotation for each model (and alignments):
>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.4   1.4e-19   1.2e-16       2      60 ..      10      67 ..       9      71 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 1.4e-19
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTC CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgr 60
                 +q+++++r +Ilsg  ++Gd L +++++a+++g sr++vReAL+ Le+eg ++r ++r
  CTQ30224.1 10 RDQIAQMIRYQILSGAMKAGDEL-TQESIAEQLGLSRMPVREALQSLEQEGFLVRLPNR 67
                689********************.*******************************9876 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.2e-09   1.1e-06       6      47 ..      19      61 ..      17      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.2e-09
      HTH_24  6 rkIL.elLqknprisqreLAerlglSpstvnrrlkrLeeeGlI 47
                ++IL  ++++   ++q  +Ae+lglS+ +v++ l+ Le+eG++
  CTQ30224.1 19 YQILsGAMKAGDELTQESIAEQLGLSRMPVREALQSLEQEGFL 61
                6677555555667****************************86 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   5.8e-07   0.00052      15      51 ..      28      64 ..      20      65 .. 0.90
   2 ?    0.7   0.0      0.54   4.8e+02      12      29 ..     156     175 ..     152     176 .. 0.73
   3 ?   -1.4   0.0       2.3   2.1e+03      13      27 ..     183     199 ..     182     200 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.8e-07
                TBSS-BHHHHHHHHTS-HHHHHHHHHHHHHTTSEE.. CS
    HTH_IclR 15 apqeltlselArrtglpkStvhRlLqtLvelGyveqd 51
                a+ elt   +A+++gl++  v+  Lq+L+++G++ + 
  CTQ30224.1 28 AGDELTQESIAEQLGLSRMPVREALQSLEQEGFLVRL 64
                677899999*************************875 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.54
                 -CTTBSS..-BHHHHHHHHT CS
    HTH_IclR  12 laeapqe..ltlselArrtg 29 
                 l e +qe  l lselA+++g
  CTQ30224.1 156 LKENGQEsaLILSELANAIG 175
                 566666655889****9987 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.3
                 CTTBSS..-BHHHHHHH CS
    HTH_IclR  13 aeapqe..ltlselArr 27 
                 a+++q+  l l+e+ r+
  CTQ30224.1 183 AQTTQRyfLMLAEIMRQ 199
                 67777777789999987 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0         1   9.4e+02      21      31 ..       7      17 ..       3      23 .. 0.81
   2 !   19.8   0.1   6.5e-07   0.00058      22      58 ..      32      70 ..      21      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1
                EHHHHHHHHHT CS
   HTH_Crp_2 21 pltqeelAsml 31
                + t++++A+m+
  CTQ30224.1  7 KQTRDQIAQMI 17
                5699*****98 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 6.5e-07
                HHHHHHHHHTTSSHHHHHHHHHHHHHTTSEEE..TEEEE CS
   HTH_Crp_2 22 ltqeelAsmlGltretvsrilseLkreglisr..grrir 58
                ltqe +A+ lGl+r  v  +l+ L++eg + r  +r+++
  CTQ30224.1 32 LTQESIAEQLGLSRMPVREALQSLEQEGFLVRlpNRHMQ 70
                8***************************99843444355 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.6e-07   0.00033       4      46 ..      20      62 ..      18      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.6e-07
      HTH_11  4 qilelLleargpisgeeLAeeLnvSrrtvrrdIkaLeelgvpI 46
                qil   ++a + ++ e +Ae+L++Sr+ vr  +++Le  g+ +
  CTQ30224.1 20 QILSGAMKAGDELTQESIAEQLGLSRMPVREALQSLEQEGFLV 62
                566666777888***************************9754 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   9.1e-07   0.00081      17      38 ..      26      49 ..       8      55 .. 0.84
   2 ?   -1.8   0.0       2.6   2.3e+03       2      12 ..      61      71 ..      60      74 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9.1e-07
                H..TTT--HHHHHHHHTS-HHHHH CS
  Sigma70_r4 17 f..geglTleEIgerlgiSrerVr 38
                   g++lT+e I+e+lg+Sr+ Vr
  CTQ30224.1 26 MkaGDELTQESIAEQLGLSRMPVR 49
                36689****************999 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.6
                HHHS-HHHHHH CS
  Sigma70_r4  2 LasLpererev 12
                L +Lp r+ +v
  CTQ30224.1 61 LVRLPNRHMQV 71
                7899***9998 PP

>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.3     8e-07   0.00072      37     122 ..     106     189 ..      78     203 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 8e-07
         FCD  37 eeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrrlrrlalssperleeslaeHraildAirardadaAraamrrH 122
                 ++ a+e ++    + ++aFH++l++  +n++la++++++ +    +  l+    e+ +es     ++++Ai ++++ + ++ ++r 
  CTQ30224.1 106 RARAQELARPGENTRELAFHQLLISYLDNRYLAKAYQQFLDGYISYVILY--LKENGQESALILSELANAIGNGEGGKIAQTTQRY 189
                 3333333334457889**************************99988888..5777777777778899999999998888885544 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.2e-06    0.0011      17      52 ..      31      66 ..      19      68 .. 0.92
   2 ?   -2.7   0.0       6.5   5.8e+03      17      27 ..     164     174 ..     160     175 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.2e-06
                TEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEE CS
        MarR 17 plsvseLakklgvskstvtrvldrLekkGlieRsks 52
                +l++  +a++lg+s++ v ++l  Le++G++ R ++
  CTQ30224.1 31 ELTQESIAEQLGLSRMPVREALQSLEQEGFLVRLPN 66
                58999****************************987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.5
                 TEEHHHHHHHH CS
        MarR  17 plsvseLakkl 27 
                 +l +seLa+++
  CTQ30224.1 164 ALILSELANAI 174
                 56788999876 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.2e-06    0.0011      22      58 ..      31      67 ..      25      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.2e-06
                CCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 22 patadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                ++t + iae+lg++r  v e+L+sLe+ G+  r + r
  CTQ30224.1 31 ELTQESIAEQLGLSRMPVREALQSLEQEGFLVRLPNR 67
                7899**************************9887766 PP

>> FaeA  FaeA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   8.9e-06     0.008      18      52 ..      34      68 ..      17      74 .. 0.86
   2 ?   -0.6   0.0         2   1.8e+03      17      36 ..     118     137 ..     109     143 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8.9e-06
                HHHHHHHHTS-HHHHHHHHHHHHHHSSEEEE--SS CS
        FaeA 18 TreiAdalglsaYQaRyYLeqLekegkikrspvrr 52
                   iA+ lgls   +R  L+ Le+eg + r p r+
  CTQ30224.1 34 QESIAEQLGLSRMPVREALQSLEQEGFLVRLPNRH 68
                456***************************99885 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2
                 -HHHHHHHHTS-HHHHHHHH CS
        FaeA  17 kTreiAdalglsaYQaRyYL 36 
                  Tre+A +  l  Y    YL
  CTQ30224.1 118 NTRELAFHQLLISYLDNRYL 137
                 69999999888888776676 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.6e-05     0.024      27      55 .]      33      61 ..      23      61 .. 0.94
   2 ?   -2.7   0.0       6.9   6.2e+03      25      35 ..     131     141 ..     128     142 .. 0.77
   3 ?   -1.6   0.0         3   2.7e+03      40      51 ..     184     195 ..     167     196 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.6e-05
      HTH_36 27 sqetlakrlglsknTvsraikeLeqlGyi 55
                +qe +a++lgls+  v+ a+++Leq G++
  CTQ30224.1 33 TQESIAEQLGLSRMPVREALQSLEQEGFL 61
                699**********************9986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.9
      HTH_36  25 fpsqetlakrl 35 
                 +  +++lak++
  CTQ30224.1 131 YLDNRYLAKAY 141
                 66789999986 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3
      HTH_36  40 nTvsraikeLeq 51 
                 +T +r+  +L++
  CTQ30224.1 184 QTTQRYFLMLAE 195
                 588999999986 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.1e-05     0.028      10      47 ..      27      64 ..      11      73 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-05
    HTH_DeoR 10 kqqgklsveelvellgvSeaTiRRDLneLeeqglltRt 47
                k  + l+ e ++e+lg S + +R  L+ Le++g l+R 
  CTQ30224.1 27 KAGDELTQESIAEQLGLSRMPVREALQSLEQEGFLVRL 64
                5556788899*************************996 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     5e-05     0.044      16      56 ..      28      66 ..      19      68 .. 0.89
   2 ?   -2.2   0.1       4.6   4.1e+03      17      29 ..      99     114 ..      90     115 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5e-05
                CTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEES CS
      MarR_2 16 rrpgrdltvgelarrlglsksavsrilkrLvaaGLverrpg 56
                ++++  lt+  +a+ lgls+  v  +l+ L++ G+++r p+
  CTQ30224.1 28 AGDE--LTQESIAEQLGLSRMPVREALQSLEQEGFLVRLPN 66
                5566..*******************************9987 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.6
                 TTTS...EEEHHHHHH CS
      MarR_2  17 rpgr...dltvgelar 29 
                 +  +   + +++elar
  CTQ30224.1  99 ANQGevlRARAQELAR 114
                 4444456668888887 PP

>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   3.2e-05     0.029     186     234 ..      20      63 ..       3      63 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.2e-05
       EAP30 186 rlvsllaekssgggvtaselaeeeenlgwsvarakeaLeelereGllwv 234
                 +++s++ +++    +t++++ae+   lg+s+  ++eaL+ le+eG+l++
  CTQ30224.1  20 QILSGAMKAG--DELTQESIAEQ---LGLSRMPVREALQSLEQEGFLVR 63 
                 3333333333..47******888...********************987 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.9e-05     0.053       1      40 [.      18      59 ..      18      69 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.9e-05
      HTH_29  1 RaqallllaeGvs..tvsqiAkllglsrrtvyrwlkrfeegG 40
                R q+l  + ++++  t   iA++lglsr  v+ +l   e++G
  CTQ30224.1 18 RYQILSGAMKAGDelTQESIAEQLGLSRMPVREALQSLEQEG 59
                55666666666667899************************9 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.2e-05     0.065       2      41 ..      18      60 ..      17      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.2e-05
      HTH_28  2 Rleii.kllaaGh..svreaArelgisrrtvyrWikryeegGi 41
                R++i+  +++aG+  ++  +A++lg+sr  v+  ++ +e++G+
  CTQ30224.1 18 RYQILsGAMKAGDelTQESIAEQLGLSRMPVREALQSLEQEGF 60
                7777767888998799999***********************7 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   0.00011     0.094      19      42 .]      33      56 ..      27      56 .. 0.90
   2 ?   -2.9   0.0       7.3   6.6e+03      21      27 ..     168     174 ..     156     175 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
  HTH_AsnC-type 19 syaeLAervGlSestvlrRvrrLe 42
                   + + +Ae++GlS+ +v++ ++ Le
     CTQ30224.1 33 TQESIAEQLGLSRMPVREALQSLE 56
                   6789**************999887 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.3
  HTH_AsnC-type  21 aeLAerv 27 
                    +eLA ++
     CTQ30224.1 168 SELANAI 174
                    4666655 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00029      0.26      18      55 ..      25      61 ..       8      64 .. 0.88
   2 ?   -0.7   0.0         2   1.8e+03      13      34 ..     152     173 ..     147     176 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00029
                HHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
        Rrf2 18 akeeeeepvsseeiaerqnispsylekilakLrkaglv 55
                a+++++e ++ e+iae+ ++s+  ++  l+ L+++g++
  CTQ30224.1 25 AMKAGDE-LTQESIAEQLGLSRMPVREALQSLEQEGFL 61
                5667777.9***************************86 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2
                 HHHHHHHSSTCC-B-HHHHHHH CS
        Rrf2  13 allyLakeeeeepvsseeiaer 34 
                 ++lyL+++ +e+ + ++e+a+ 
  CTQ30224.1 152 VILYLKENGQESALILSELANA 173
                 7899999999999999999875 PP

>> HTH_54  ParA helix turn helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00031      0.28      29      81 ..      33      84 ..      29      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00031
      HTH_54 29 skaalaklpklsrrkvdkavsemeaeGyefekkeagstekYaltiqnvidlyk 81
                ++ ++a++ +lsr  v +a++ +e+eG+   + +    +  +l++++v ++++
  CTQ30224.1 33 TQESIAEQLGLSRMPVREALQSLEQEGFLV-RLPNRHMQVSTLAVEDVSHIFR 84
                788999*********************965.5557788888999999999886 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00049      0.44       5      45 ..      16      59 ..       5      64 .. 0.79
   2 ?   -3.0   0.0       7.8     7e+03       6      22 ..     105     121 ..     103     123 .. 0.44

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00049
      HTH_23  5 reRlrillllae...GlsvreIAreLgvsrrTvyrwlkryreeG 45
                ++R++il  + +    l+++ IA++Lg sr+ v+  l+  ++eG
  CTQ30224.1 16 MIRYQILSGAMKagdELTQESIAEQLGLSRMPVREALQSLEQEG 59
                45666666666566689*************98888888876677 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 7.8
      HTH_23   6 eRlrillllae.....Glsvre 22 
                  R+r+     +     G ++re
  CTQ30224.1 105 LRARA-----QelarpGENTRE 121
                 34444.....333334666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1519.45
//
Query:       CTQ30225.1  [L=312]
Description: malate dehydrogenase, NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-51  175.0   0.0    1.7e-51  174.4   0.0    1.2  1  Ldh_1_C         lactate/malate dehydrogenase, alpha/beta C-te
    4.6e-46  156.4   0.6    6.5e-46  155.9   0.6    1.2  1  Ldh_1_N         lactate/malate dehydrogenase, NAD binding dom
  ------ inclusion threshold ------
        0.2   12.1   1.2       0.38   11.2   0.3    2.0  2  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai


Domain annotation for each model (and alignments):
>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.4   0.0   2.9e-55   1.7e-51       1     166 [.     147     309 ..     147     310 .. 0.99

  Alignments for each domain:
  == domain 1  score: 174.4 bits;  conditional E-value: 2.9e-55
                 THHHHHHHHHHHHHHHTS-GGGEE--EEBSSSTETTEEHHHHHTTSTTSTHHHHHHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHHHHHHHHTTHTE CS
     Ldh_1_C   1 TtLDivRaktflaekagvtprsvkvtViGgHsgvtiipllsqvkellklsekqleeliervqnggdevvkakkGagsatlsmAvAgakfveallrdtke 99 
                 TtLDi+R++tf+ae +g+++++v+v+ViGgHsgvti pllsq+   +++s++++++l++r+qn+g+evv+ak+G+gsatlsm++A+a+f  +l+r++++
  CTQ30225.1 147 TTLDIIRSNTFVAELKGKSATEVEVPVIGGHSGVTILPLLSQIPG-VSFSDQEIADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRAMQG 244
                 9*******************************************9.9**************************************************** PP

                 EEEEEEEEESCCCECCSSEEEEEEEEEEETTEEEEE-------HHHHHHHHHHHHHHHHHHHHHHCC CS
     Ldh_1_C 100 ilsagvyldgevglkdqeieyfsvPvvlgknGvekvleilklndfeeekleksvkeLkkeiekglef 166
                 +  +gv+++++v+ + +++++fs+P++lgknGve+  +i+kl++fe+++le + ++Lkk+i  g++f
  CTQ30225.1 245 E--KGVVECAYVEGDGHYARFFSQPLLLGKNGVEERQSIGKLSAFEQQALEGMLDTLKKDIALGEDF 309
                 *..***********************************************************99988 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.9   0.6   1.1e-49   6.5e-46       1     141 []       1     145 [.       1     145 [. 0.99

  Alignments for each domain:
  == domain 1  score: 155.9 bits;  conditional E-value: 1.1e-49
                 EEEEEETTTSHHHHHHHHHHHHT.TSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEEESSGGGGTTESEEEE--S-SS-TTTTHHHHHHHHHHHH CS
     Ldh_1_N   1 vkvavvGaaGgiGqslalllank.kladelaLlDiakekleGvaldlshistflsvkvkvsekeeealkdadvvvitagvprkpGetRddLlkvNakIv 98 
                 +kvav+GaaGgiGq+lalll+++ + ++el L+Dia+ +++Gva+dlshi t +++k+ ++e+ + al++advv+i agv rkpG++R+dL++vNa+Iv
  CTQ30225.1   1 MKVAVLGAAGGIGQALALLLKTQlPSGSELSLYDIAP-VTPGVAVDLSHIPTDVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIV 98 
                 69**********************************5.9************************************************************ PP

                 HHHHHHHHHHTTTSEEEE-SSSHH....HHHHHHHHHHTS-GGGEEE CS
     Ldh_1_N  99 keiveaiakvapnaivlvvsNPvd....iltevlkkasglpkkrvig 141
                 k++v++iak +p+a++ +++NPv+    i++evlkka+ ++k++++g
  CTQ30225.1  99 KNLVQQIAKTCPQACIGIITNPVNttvaIAAEVLKKAGVYDKNKLFG 145
                 *********************************************98 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   6.4e-05      0.38       1      35 [.       2      37 ..       2      82 .. 0.64
   2 ?   -1.8   0.0      0.67     4e+03       4      25 ..     173     192 ..     170     226 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.4e-05
                    EEEEETTTSHHHHHHHHHHHC.TSSEEEEEEEESTT CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLee.hpevelvvllsssr 35
                    kva++Ga G +Gq+l+ lL++  p+ +++ l+  + 
      CTQ30225.1  2 KVAVLGAAGGIGQALALLLKTqLPSGSELSLYDIAP 37
                    7******************99556556666655555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.67
                     EETTTSHHHHHHHHHHHCTSSE CS
  Semialdhyde_dh   4 ivGatGyvGqellrlLeehpev 25 
                     ++G  G  G  +l lL++ p v
      CTQ30225.1 173 VIG--GHSGVTILPLLSQIPGV 192
                     666..77777777777774433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2530.94
//
Query:       CTQ30226.1  [L=156]
Description: DNA-binding transcriptional dual regulator, L-arginine-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-26   91.3   0.1    3.5e-26   90.7   0.1    1.3  1  Arg_repressor    Arginine repressor, DNA binding domain
    4.2e-21   74.6   0.2    8.1e-21   73.6   0.2    1.5  1  Arg_repressor_C  Arginine repressor, C-terminal domain
  ------ inclusion threshold ------
      0.086   12.8   0.0        0.2   11.7   0.0    1.7  1  DUF4911          Domain of unknown function (DUF4911)


Domain annotation for each model (and alignments):
>> Arg_repressor  Arginine repressor, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.1   5.9e-30   3.5e-26       1      69 [.       5      74 ..       5      75 .. 0.97

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 5.9e-30
                   SSHHHHHHHHHHHHHHS---SHHHHHHHHHTTT--.--HHHHHHHHHHHT-EEEETTSTSEEEE-B-SS- CS
  Arg_repressor  1 ikkeerqklikkiikeekissQkelvelLkeeGid.vtQatvSRdLkelglvkvraengeyvYvlpaets 69
                   +k+ee++k++k+++keek+ssQ+e+v++L+eeG++ ++Q++vSR+L+++g+v++r++++e+vY+lpae +
     CTQ30226.1  5 AKQEELVKAFKALLKEEKFSSQGEIVQALQEEGFEnINQSKVSRMLTKFGAVRTRNAKMEMVYCLPAELG 74
                   5899******************************99*******************************975 PP

>> Arg_repressor_C  Arginine repressor, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.2   1.4e-24   8.1e-21       1      66 [.      82     148 ..      82     149 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1.4e-24
                      HHHH-SEEEEETTEEEEE-STTHHHHHHHHHHH-...TTEEEEEE-SSEEEEEE-TTS-HHHHHHHH CS
  Arg_repressor_C   1 lrelvvsidsaenlvvikTlpGaAqavAaaiDslel.peilGtiAGdDTilvilrseedaeelaekl 66 
                      l++lv++id+++ +vvi+T+pGaAq++A+++Dsl+  ++ilG+iAGdDTi+ ++  + ++++l + +
       CTQ30226.1  82 LKNLVLDIDYNDAVVVIHTSPGAAQLIARLLDSLGKaEGILGSIAGDDTIFTTPARGFTVKDLHDAI 148
                      6899******************************888*******************99999998866 PP

>> DUF4911  Domain of unknown function (DUF4911)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.3e-05       0.2      27      55 ..      89     117 ..      84     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.3e-05
     DUF4911  27 vdkkkGlvrirttpdtkeellelLesLkk 55 
                 +d+ +++v+i+t+p+ ++ + +lL+sL+k
  CTQ30226.1  89 IDYNDAVVVIHTSPGAAQLIARLLDSLGK 117
                 799************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      732  (0.0408277); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1330.18
//
Query:       CTQ30227.1  [L=28]
Description: hypothetical protein CH1034_330010 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (28 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       207  (0.0115455); expected 358.6 (0.02)
Passed bias filter:                      118  (0.00658152); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 223.46
//
Query:       CTQ30228.1  [L=87]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-22   76.9   0.1    1.2e-21   76.4   0.1    1.3  1  DUF1471   Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.1   6.7e-26   1.2e-21       2      56 .]      35      87 .]      34      87 .] 0.98

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 6.7e-26
                EEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEEEE CS
     DUF1471  2 qpigtisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAelYK 56
                + igt+sv  v++sp+d+++ l+kkA+e+GA++YrI++ar+  g+++hatAelYK
  CTQ30228.1 35 EAIGTVSVGAVASSPMDMHEMLNKKAQEEGASSYRIIEART--GDHWHATAELYK 87
                579**************************************..***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 660.98
//
Query:       CTQ30229.1  [L=88]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-23   80.9   0.1    7.3e-23   80.3   0.1    1.3  1  DUF1471   Protein of unknown function (DUF1471)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.1   4.1e-27   7.3e-23       1      56 []      35      88 .]      35      88 .] 0.99

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 4.1e-27
                EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEEEE CS
     DUF1471  1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAelYK 56
                lq++gtisvs+v ++p+d++++l++kA+++GA++YrI++ar+  g+ +hatAelYK
  CTQ30229.1 35 LQSMGTISVSQVGSAPMDMRQELAAKAEKEGASSYRIIEART--GDSWHATAELYK 88
                89****************************************..***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 635.87
//
Query:       CTQ30230.1  [L=91]
Description: putative barnase inhibitor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-06   25.6   0.6    1.2e-05   25.2   0.6    1.3  1  Barstar   Barstar (barnase inhibitor)


Domain annotation for each model (and alignments):
>> Barstar  Barstar (barnase inhibitor)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.6   6.8e-10   1.2e-05       1      74 [.       5      78 ..       5      83 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 6.8e-10
     Barstar  1 tldgakirdkadfldeiaealgfPdyfGrNlDALdDcLtd.........aegyviviegsaalrkalpeafetllevledaae 74
                t+d+++i+  +df++e+++++++ +   +NlD L+D  t+         +      + +   l  +++  f +l  ++++a+e
  CTQ30230.1  5 TFDFDEIAEQQDFYREFSRTFELAQDKVNNLDSLWDAVTGgllplpldiE------FIH---LNDKQRRRFGALILLFDEAEE 78
                5799************************************9886554331......222...223333334445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 749.51
//
Query:       CTQ30231.1  [L=655]
Description: p-hydroxybenzoic acid efflux system component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.1e-139  465.5  28.7   3.5e-139  465.3  28.7    1.0  1  FUSC      Fusaric acid resistance protein family
    2.7e-12   46.9  40.4    8.8e-12   45.3  17.6    3.0  3  FUSC_2    Fusaric acid resistance protein-like
  ------ inclusion threshold ------
       0.17   12.5   0.1       0.46   11.2   0.1    1.7  1  DUF2470   Protein of unknown function (DUF2470)


Domain annotation for each model (and alignments):
>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  465.3  28.7  5.8e-143  3.5e-139       2     651 ..      11     653 ..      10     655 .] 0.97

  Alignments for each domain:
  == domain 1  score: 465.3 bits;  conditional E-value: 5.8e-143
        FUSC   2 wlFalKtllAalLALyiAlrleLpqPywAmtTVfiVsqPls.........GavlsKslyRllGTllGaaaavllvalfvqapllfllalalWiglclal 91 
                 ++Fa+K+++A++LAL+++++++L+ P+wA++T++iV+ + +         Ga++ +++ R++GT++G++aa++++ l++ apll++l+++lW g+c+++
  CTQ30231.1  11 LRFAIKLACAVVLALFVGFHFQLETPRWAVLTAAIVAAGPAfaaggepysGAIRYRGMLRIAGTFIGCIAALVIIILMIRAPLLMMLVCCLWAGFCTWV 109
                 79**********************************65444488888888************************************************* PP

        FUSC  92 slldrnfrsYafvLAGYTaalialpavadPetvFdiAvaRvseIvlGIvCaalVsalvfPrsvapalrarlrallrdalalaaaalageegaeareaar 190
                 s+l++  +sYa+ LAGYTa +i ++  ++P  + ++Av R+seIv+GIv+a++ ++l++Prs++++++ +l+ ll + ++l++ ++a++e++e++ +a+
  CTQ30231.1 110 SSLVKVENSYAWGLAGYTALIIIITIHTNPMLAPQFAVERCSEIVIGIVSAIVADLLFSPRSIKKEIDLELDNLLIAQYKLMQLCVAHGEKEEVD-QAW 207
                 *******************************************************************************************9995.*** PP

        FUSC 191 arlaadilalealrsqaayesprirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaaleaaaaaealeaalaalrarlral 289
                  +l+++++ale++rs + +es+r++ ++++l+++++  l+l++++++++  ++  ++  ++     ++l+ae  +       ++ +++l+++r+ l++ 
  CTQ30231.1 208 GALVRRTTALEGMRSNLIMESSRWAKANQRLKAINTLSLTLITQACETYLIQNSRPEMVTDD---YRELFAEPVE-----TVQDVHQQLKRMRRFLTWK 298
                 **************************************************998888877777...99******99.....6899************999 PP

        FUSC 290 rraleadadtaalllarlaellaelaqllaslraleaaiaaarraerlarhrdhlaallnglraalaillaglfWiatgWpsGatavllaaivcslfat 388
                  +++   +  +++ +a+ + ll++ +  ++++ + e +  +  +    + ++++++a++n++r+ + ++l++lfW++tgW+sG++a++++a+v++l+++
  CTQ30231.1 299 GEHNTPVTIYSWVGAATRYLLLKRGVVGNTKISRIEDGVLR-GETVVKVESAERHHAMVNFWRTSVSCILGTLFWLWTGWTSGSGAMVMIAVVTALAMR 396
                 999999**********************************8.9999999************************************************** PP

        FUSC 389 ldnPapallqfligtllavlaallllfvvlPhvdg.fplLvlvlapplllgglllarprlag.iglglavffalllapqnamtydfatflnsalAlllG 485
                 l+nP++++ +fl gtl+a++++ l+ +v++P++++ + lL+++la++++++g+ ++++rl+  ++l+ ++++++l    n+m++ f++fl+sal++++G
  CTQ30231.1 397 LPNPRMVAIDFLYGTLAALPLGTLYFLVIMPATQQsMLLLCISLAAMAFFIGIEVQKRRLGSlGALASTINILVLD---NPMQFQFSQFLDSALGQIVG 492
                 ***********************************9************************9867788888877776...******************** PP

        FUSC 486 vllaavvfrlirpvsaewlarrllralrrdlaraasrpaaeaesrfesrmldrlaqllprlaaapparrellrdglaalrlgravlrLrraleralaae 584
                 ++la++v+ ++r  s++++ r ll+++++  ++ +++++a+++++++ +++++l++ll++ + + ++ r +l+ ++a+ rl +a + ++  l++  +++
  CTQ30231.1 493 CFLALMVILIVRDNSRARTGRVLLNQFVSAAVSSLTTNSARRKENHLPALYQQLFLLLNKFPGDVARFRLALTLIIAHQRLRDAPVPVNDDLSA-FHRQ 590
                 **********************************************************************************************.**** PP

        FUSC 585 araaldavlaalafrapaaarsarrlrapaaalraldaalaalaaseatsa....lrralaaLvrlrlall 651
                 +r++ d+v++a +        +++r+r++ ++l++ld ++++l+ +ea+++    +rr++++L+  ++ l 
  CTQ30231.1 591 LRRTADHVISAGS--------DDKRRRYFTQLLAELDVYQEKLRVWEASPQvtepVRRLVEMLHKYQHVLT 653
                 **********999........899999**********************99999**********9998775 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3  17.6   1.5e-15   8.8e-12       1     126 [.      23     162 ..      21     163 .. 0.87
   2 !    4.7  15.8    0.0052        31      10     126 ..     376     498 ..     363     503 .. 0.66
   3 ?    2.7   0.2     0.021   1.2e+02      35      60 ..     481     506 ..     475     531 .. 0.73

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 1.5e-15
      FUSC_2   1 lavliaellglwrgeWalitaaivl.........sptlgasltravqRilGtvlGavlallllyllpg.n.lalallvfllvfli...afflk.rnyal 84 
                 la+++++ ++l+ + Wa++taaiv          +p++ga   r+  Ri+Gt++G+++al+++ l    + l +++++++++f++   ++++  ++ya+
  CTQ30231.1  23 LALFVGFHFQLETPRWAVLTAAIVAagpafaaggEPYSGAIRYRGMLRIAGTFIGCIAALVIIILMIRaPlLMMLVCCLWAGFCTwvsSLVKVeNSYAW 121
                 578999***************************99**************************996665516777778888889999776556644889** PP

      FUSC_2  85 afifltllalllyslaagsgnpieialhRlldvliGiliall 126
                 + + +t+l+++++  ++ +   +++a +R+ +++iGi+ a++
  CTQ30231.1 122 GLAGYTALIIIITIHTN-PMLAPQFAVERCSEIVIGIVSAIV 162
                 ******99999999875.4455679**************998 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0052
      FUSC_2  10 gl..wrgeWalitaaivlsptlgasltravqRilGtvlGavlall.llyllpgn....lalal.lvfllvfliafflkrny.alafifltllalllysl 99 
                 g+    g +++i+++  l++ l +  + a+  + Gt++++ l+ l +l++ p++    l l++ l ++++f+++ ++kr+  +l++++ t+++l+l + 
  CTQ30231.1 376 GWtsGSGAMVMIAVVTALAMRLPNPRMVAIDFLYGTLAALPLGTLyFLVIMPATqqsmLLLCIsLAAMAFFIGIEVQKRRLgSLGALASTINILVLDNP 474
                 332246779999999999*******************99999988444666654442433333133333555566778777577888889999888774 PP

      FUSC_2 100 aagsgnpieialhRlldvliGiliall 126
                    ++ +++ +l  +l  ++G+++al+
  CTQ30231.1 475 ---MQFQFSQFLDSALGQIVGCFLALM 498
                 ...455555666666666666666665 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.021
      FUSC_2  35 ravqRilGtvlGavlallllyllpgn 60 
                 +++   lG ++G++lal ++ ++  n
  CTQ30231.1 481 QFLDSALGQIVGCFLALMVILIVRDN 506
                 56666789999999999999888876 PP

>> DUF2470  Protein of unknown function (DUF2470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   7.6e-05      0.46      26      77 .]     229     291 ..     188     291 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.6e-05
                 -TTC.CEEEEEEE-SSEEEEEE........C.......CEEEEEE-SS---SCCHHHHHHHHH CS
     DUF2470  26 vkea.ksarmtdidldgltlrl........gakags..ektvripFdpplkswaearerLveM 77 
                  ++a ++ r+++i++ +ltl +        ++++ +  + ++r  F +p++++++++++L  M
  CTQ30231.1 229 SRWAkANQRLKAINTLSLTLITqacetyliQNSRPEmvTDDYRELFAEPVETVQDVHQQLKRM 291
                 455547779************9999998885555557899********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1094  (0.0610185); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 4192.66
//
Query:       CTQ30232.1  [L=310]
Description: p-hydroxybenzoic acid efflux system component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-22   77.2   3.2    4.4e-19   68.0   4.4    2.7  2  Biotin_lipoyl_2  Biotin-lipoyl like
    1.9e-15   57.4   2.1    2.7e-10   40.9   0.0    2.9  3  HlyD_3           HlyD family secretion protein
    5.5e-15   55.2   5.8    7.4e-15   54.7   3.7    2.1  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    2.2e-09   37.1   0.0    5.4e-09   35.8   0.0    1.6  1  HlyD             HlyD membrane-fusion protein of T1SS
     0.0062   16.3   0.0        0.4   10.6   0.1    2.4  2  Biotin_lipoyl    Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   4.4   1.2e-22   4.4e-19       3      50 .]      48      95 ..      44      95 .. 0.97
   2 !    4.9   0.0    0.0066        24       4      27 ..     156     179 ..     153     181 .. 0.84

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 1.2e-22
  Biotin_lipoyl_2  3 vsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaqla 50
                     v Ia++vsG+++q+nVkd+q Vk+ +vL+++D++++q+alaqaea++a
       CTQ30232.1 48 VAIAPDVSGLISQVNVKDNQLVKKDQVLFVIDQPRYQKALAQAEADVA 95
                     89*******************************************985 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0066
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaG 27 
                       I ap +G V+ lnV  G  +  G
       CTQ30232.1 156 VIRAPADGWVTNLNVYTGEFITRG 179
                      599************988777665 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.5   9.3e-06     0.033       5      57 ..      53     106 ..      49     133 .. 0.89
   2 !   40.9   0.0   7.5e-14   2.7e-10       1      85 [.     156     238 ..     156     278 .. 0.80
   3 ?   -0.1   0.0      0.41   1.5e+03      51      96 ..     256     270 ..     248     297 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.3e-06
      HlyD_3   5 pvdGvvvelnveegevvqagdelleiipp..dtllveakvpaadlgsikkkgqkv 57 
                  v+G ++++nv+ ++ v + ++l+ i  p  +++l++a+ + a+ ++++ ++ +v
  CTQ30232.1  53 DVSGLISQVNVKDNQLVKKDQVLFVIDQPryQKALAQAEADVAYYQTLA-QEKRV 106
                 589***********************997446999************96.77776 PP

  == domain 2  score: 40.9 bits;  conditional E-value: 7.5e-14
      HlyD_3   1 tlrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvdaktg 85 
                 ++rAp dG v+ lnv  ge++++g + + ++ ++t+ v a++ ++ l  ++ +g +++++   gs +t+kg++++i++ v++ ++
  CTQ30232.1 156 VIRAPADGWVTNLNVYTGEFITRGSTAVALVKENTFYVMAYLEETKLEGVR-PGYRAEITPL-GSSKTIKGTVDSIAAGVTNASS 238
                 69************************************************7.*******998.8889***********9985322 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.41
      HlyD_3  51 k.kkgqkvtlkldqgsdytlkgkierisptvdaktgaykvevslenp 96 
                 +  + ++v+++ld                                ++
  CTQ30232.1 256 RlAQRVPVRIRLD--------------------------------HQ 270
                 4455556666665................................33 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   3.7   2.1e-18   7.4e-15      18     190 ..      46     235 ..      44     240 .. 0.78
   2 ?   -2.3   0.0      0.61   2.2e+03     195     210 ..     261     276 ..     251     277 .. 0.81

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 2.1e-18
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXX.............XXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  18 rlarvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqee......yllalkakkklkkke............lleaarerLrllgvseeqiae 98 
                 +++ +++ v+G +++++v+   + Vkk+q L+ ++ p   +a ++      y + l+++k+ ++ +            ++++a++ L+ ++    q+a+
  CTQ30232.1  46 DIVAIAPDVSGLISQVNVK-DNQLVKKDQVLFVIDQPRYQKALAQaeadvaYYQTLAQEKRVEAGRrnklgvqamsreEIDQANNVLQTVEH---QLAK 140
                 57889**************.9*************9887554433201113365555555554443378899999988888888888887764...4444 PP

                 XXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  99 lektgkvq....ktvtvkapisGvVteknvreGqyvqpgdtlftiadlstVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyptvdp 190
                   ++++      +++ ++ap++G Vt++nv +G++++ g+t + + + +t +v+a + e++l+ v++g ++e+t      kt++G+vd i+  v +
  CTQ30232.1 141 AVASRDLArldlERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKENTFYVMAYLEETKLEGVRPGYRAEITP-LGSSKTIKGTVDSIAAGVTN 235
                 4444444312227899*********************************************************85.57788*********987766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.61
                 XXXXXXXXXXXXXXXX CS
    HlyD_D23 195 vkvRieldNpdgkLkp 210
                 v vRi+ld ++g+L p
  CTQ30232.1 261 VPVRIRLDHQQGNLWP 276
                 6799999999998876 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.5e-12   5.4e-09       1      77 [.      22     284 ..      16     286 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.5e-12
                 HSEEEEEEEEEE....................................................................................... CS
                 xxxxxxxxxxxx....................................................................................... RF
        HlyD   1 alavfvawaala....................................................................................... 12 
                 ++a+f aw++ +                                                                                       
  CTQ30232.1  22 FVAIFRAWVYYTaspwtrdarfsadivaiapdvsglisqvnvkdnqlvkkdqvlfvidqpryqkalaqaeadvayyqtlaqekrveagrrnklgvqams 120
                 789999999999*************************************************************************************** PP

                 ..............................................................................EEEEEEEECEEEEEEEGCGEE CS
                 ..............................................................................xxxxxxxxxxxxxxxxxxxxx RF
        HlyD  13 ..............................................................................etdldqvrvgqpvevrfdAfp 33 
                                                                                               et+l +vr+g  +e++  + +
  CTQ30232.1 121 reeidqannvlqtvehqlakavasrdlarldlertvirapadgwvtnlnvytgefitrgstavalvkentfyvmayleETKLEGVRPGYRAEITPLGSS 219
                 **********************************************************************************************99999 PP

                 ECTTTSEEEEEEECTSB...........................EEEEEEEEEEEETTEEEESSSS-TTEE CS
                 xxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  34 qtktgkftgvVvgispd...........................rvpvrvvvekaqgpyyplriglkagal 77 
                 +t    + g+V++i+++                           rvpvr+ ++ +qg+ +p  +g +a++ 
  CTQ30232.1 220 KT----IKGTVDSIAAGvtnassssdskgmasvdsnlewvrlaqRVPVRIRLDHQQGNLWP--SGTTATVV 284
                 98....777777777777777****************************************..78888775 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00011       0.4       7      36 ..      53      78 ..      47      83 .. 0.60
   2 ?    3.1   0.0     0.023        83      44      68 ..     156     180 ..     154     185 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
                   SSEEEEEE.ECSESSSTTCEE-TTSEEEEE CS
  Biotin_lipoyl  7 miGesveegvvevlvkvGdkVkagqvlaev 36
                   +++ +    + +v vk+ + Vk++qvl ++
     CTQ30232.1 53 DVSGL----ISQVNVKDNQLVKKDQVLFVI 78
                   33333....335666666666666666665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.023
                    EEEBSSSEEEEEESSTTTEEE-TTC CS
  Biotin_lipoyl  44 eieapkaGvvkeilvkeGdtvevgd 68 
                     i ap++G v+ + v  G+ ++ g+
     CTQ30232.1 156 VIRAPADGWVTNLNVYTGEFITRGS 180
                    699************9999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1154  (0.064365); expected 358.6 (0.02)
Passed bias filter:                      735  (0.040995); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2273.50
//
Query:       CTQ30233.1  [L=67]
Description: membrane protein of efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-20   73.3  11.3    1.4e-20   73.0  11.3    1.1  1  DUF1656   Protein of unknown function (DUF1656)


Domain annotation for each model (and alignments):
>> DUF1656  Protein of unknown function (DUF1656)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0  11.3   7.8e-25   1.4e-20       2      56 .]       7      61 ..       6      61 .. 0.98

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 7.8e-25
     DUF1656  2 ldlgGvyvPpllvlallAllltlllrrllarlglyrlvWhpaLfdlAlfvcllgl 56
                ++++G+ +Pp+++ +ll l++++l++rll  +g+y++vWhpaLf++Al++cl++l
  CTQ30233.1  7 IVIFGLSFPPIFFELLLSLAIFWLVHRLLVPTGIYDFVWHPALFNTALYCCLFYL 61
                89***************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      186  (0.0103743); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 508.87
//
Query:       CTQ30234.1  [L=309]
Description: DNA-binding transcriptional regulator, efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-41  142.4   0.0    1.7e-41  141.9   0.0    1.2  1  LysR_substrate  LysR substrate binding domain
    7.8e-20   70.6   1.0    7.8e-20   70.6   1.0    1.9  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.076   12.9   0.1       0.18   11.7   0.1    1.6  1  MarR_2          MarR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.9   0.0   2.9e-45   1.7e-41       4     207 ..      90     291 ..      87     293 .. 0.95

  Alignments for each domain:
  == domain 1  score: 141.9 bits;  conditional E-value: 2.9e-45
                     SCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSEC CS
  LysR_substrate   4 lrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gepvs 97 
                     + g+Lrig+++t+a+ +l+++ a+ +++yP+++++lv+g      dl+a+g lD++ir g ++ds+l +r+L++ p+vl+a++++ La+ g p  
      CTQ30234.1  90 PIGTLRIGCSSTMAQNVLARITAKMLKEYPGLSVNLVTGI--PAPDLIADG-LDVVIRVGALQDSSLFSRRLGSMPMVLCAAKSY-LAQaGNPEK 180
                     679*************************************..*********.*********************************.***999*** PP

                     GGGGCTSEEEEESTTST.HHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEETT CS
  LysR_substrate  98 ledLadeplilleegsg.lrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrkg 190
                     ++dLa++ ++ ++         +     +++l+p++++ +n+  +l+++  aG+Gia++p +++ +e+++g+l+ + lp ++   r++y++y ++
      CTQ30234.1 181 PADLAGHAWLEYSVRPDnEFVIIAPEGISTRLTPQGRFVTNDPMTLVRWLTAGVGIAYVPLMWAIEEINRGELE-ILLPSYQSDpRPVYALYTEK 274
                     ************866664666666677777********************************************.******************** PP

                     CCCHHHHHHHHHHHHHH CS
  LysR_substrate 191 relspavrafidflrea 207
                     + l+ +v+  i++l+e 
      CTQ30234.1 275 DKLPLKVQVCINYLTEY 291
                     *************9986 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   1.0   1.3e-23   7.8e-20       1      60 []       4      63 ..       4      63 .. 0.98
   2 ?   -1.9   0.0      0.56   3.3e+03      52      60 .]     209     217 ..     203     217 .. 0.81

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 1.3e-23
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l+++ +f +v+e gsft+AA++L +s +++s+ +++LE+el+v+L++R++r+l LTeaG+
  CTQ30234.1  4 LKRMSVFAKVVELGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLNRSTRSLGLTEAGK 63
                6899******************************************************95 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.56
                 EEEE-HHHH CS
       HTH_1  52 glrLTeaGe 60 
                 ++rLT++G+
  CTQ30234.1 209 STRLTPQGR 217
                 489****97 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1     3e-05      0.18      23      47 ..      18      42 ..      12      43 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3e-05
                EHHHHHHHHTSSHHHHHHHHHHHHH CS
      MarR_2 23 tvgelarrlglsksavsrilkrLva 47
                + ++ ar l++s s++s+++++L++
  CTQ30234.1 18 SFTAAARQLQMSVSSISQTVAKLED 42
                56788******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2366.42
//
Query:       CTQ30235.1  [L=481]
Description: putative peptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-68  230.6   0.7      5e-68  230.0   0.7    1.3  1  PmbA_TldD  Putative modulator of DNA gyrase


Domain annotation for each model (and alignments):
>> PmbA_TldD  Putative modulator of DNA gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.0   0.7   2.8e-72     5e-68       1     279 []      35     332 ..      35     332 .. 0.95

  Alignments for each domain:
  == domain 1  score: 230.0 bits;  conditional E-value: 2.8e-72
                 EEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEETTEEEEEE...ESSHHHHHHHHHHHHHHCCS---TT-.................GGS-HHH CS
   PmbA_TldD   1 eaevrleesestsvrfengevetnsssedsglgvrvikggrlgfastldtsdealeeaveraveiaklapedpea.................eevsaee 82 
                 + ++++++s  +s+ +e++ ++  s+++d+g+gvr+++g+++gfa+++++s+ ale+ +++a  i + +++ + +                 ++++ ee
  CTQ30235.1  35 YGDLYFQSSYHESWVLEDSIIKDGSYNIDQGVGVRAVSGEKTGFAYADQISKLALEQSAQAARTIVRDTGNGKVQtlgavehralytsidplQSMTREE 133
                 5699******************************************9999999**************99999999************************ PP

                 HHHHHHHHHHH.CHCSTTEEEEEEEEEE......EEE.EEEEEEETTSEEEEEEEEEEEEEEEEEE..STCS..ET.EEEEEEEE.....SSHHH...S CS
   PmbA_TldD  83 kielleelekalrsadpkienskgarisgvsaslsaskeeklianSeGldveqtrtrvslslsvia.ddggs..gd.gmgggsgy.....edlee...e 169
                 k ++l++++k +r+ad+        r++ vsasls+++e +l+a ++G+ + + r+ v+ls+sv + +dg++  g+ g gg++gy         +    
  CTQ30235.1 134 KLDILRRVDKVARAADQ--------RVQEVSASLSGVYELILVAATDGTLAADVRPLVRLSVSVLVeEDGKRerGSsGGGGRFGYdyflaS---QegdV 221
                 *****************........*****************************************5575556888899999999666551...04556 PP

                 ..SSHHHHHHHHHHCTTT-B---SEEEEEEE-HHHHHHHHHGHHHHHTBHHHHHTT--TTTT-TTSB-S-TT--EEEETT-......-SB-TTSBB--- CS
   PmbA_TldD 170 dleeiaeeaaekalasleakplppgkypVvlspeavgsllheavghaleadavlegrSflkdklGekvaselltivddpts.gglgsypfDdEGvptqr 267
                 ++++ a+ea+++al +l a+++p+g  pVvl++++ g+llheavgh+le+d++++g+S++++++Ge vasel+t+vdd+t+ +++gs ++DdEG+p q 
  CTQ30235.1 222 RADAWAKEAVRMALVNLSAVAAPAGMLPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGHMGELVASELCTVVDDGTIaDRRGSVAIDDEGTPGQY 320
                 7788********************************************************779************************************ PP

                 EEEEETTEE--- CS
   PmbA_TldD 268 tvlIenGvLkny 279
                 +vlIenG+Lk+y
  CTQ30235.1 321 NVLIENGILKGY 332
                 ***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3546.48
//
Query:       CTQ30236.1  [L=1265]
Description: conserved hypothetical protein; putative membrane protein, putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-98  330.3   0.4    1.5e-97  326.7   0.3    2.2  2  DUF3971   Protein of unknown function
      1e-61  208.4   9.1      7e-60  202.4   0.8    4.1  4  AsmA_2    AsmA-like C-terminal region
  ------ inclusion threshold ------
        0.2   11.1   0.0       0.81    9.1   0.0    1.9  2  AsmA_1    AsmA-like C-terminal region


Domain annotation for each model (and alignments):
>> DUF3971  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.041   2.4e+02     142     177 ..     358     392 ..     356     407 .. 0.79
   2 !  326.7   0.3  2.5e-101   1.5e-97       3     289 .]     506     789 ..     504     789 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.041
     DUF3971 142 pLadslgealdelqvsGevslnLnLdiplkngeevk 177
                 +La slge    +q  G+++l L Ldipl+ +e+++
  CTQ30236.1 358 KLAPSLGELWRTTQPGGKINL-LALDIPLQATEKTR 392
                 68889999999*********9.9******9544233 PP

  == domain 2  score: 326.7 bits;  conditional E-value: 2.5e-101
     DUF3971   3 dlqkikrYlPkllmgeelkdWLktaikagkvenatlvfkgdlkdfpfkdnegeFqvdaklkdaelkFqpdwpaledlsadllfennsleinlesgtlgg 101
                 d ++++rY+P++lmg++l+d+L++aikag++ +atlv+ g+++ fp+++neg+Fqv ++lk+a+++Fqpdwpal+ l++dl+f nn+l++++++++lg+
  CTQ30236.1 506 DGGQAWRYFPENLMGKALVDYLSGAIKAGQASDATLVYGGNPHLFPYPHNEGQFQVYVPLKNATFAFQPDWPALTGLNIDLNFINNGLWMRADKAMLGN 604
                 789************************************************************************************************ PP

     DUF3971 102 vsldgvkvvIpdllakkkvleidgkakgslkailkylkaspLadslgealdelqvsGevslnLnLdiplkngeevkvsGevtlknnnlslknpdleltn 200
                 v+++++ + Ipd+ a++k l id+++kg++k++  y++++pL++slg+ald+lq++G+vs++L+L+ipl+ ge ++++G+v l+nn+l++k++d++l+n
  CTQ30236.1 605 VTASNLDAAIPDY-AQEK-LLIDADIKGPGKEVGPYFNTTPLKESLGAALDSLQLDGDVSARLHLNIPLD-GEMTTAKGDVRLQNNSLFIKPLDTTLQN 700
                 *************.6666.***************************************************.8889************************ PP

     DUF3971 201 vsGeleFdnegltaknlsanllgqplnltiktkekkkdgdvsiklkgkwaaasllkklpaplddrlsGeadwqlklslklk.dkgnsiqv 289
                 +sG+++F+n++l++++lsa +++qplnl+++t+e +k++ v+++++++w++++    lp+ ++++lsG+++w++k+ ++l+ + + s++v
  CTQ30236.1 701 LSGNFSFVNGDLNSQTLSATWFNQPLNLNFSTREGEKAFLVDVGMNANWQPSRT-GLLPKAVSEALSGSVPWDGKVAIELPyHGNASYKV 789
                 *************************************************77666.689***********************999999986 PP

>> AsmA_2  AsmA-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.018   1.1e+02      77     107 ..     399     429 ..     390     475 .. 0.87
   2 !    5.7   0.8    0.0015       9.2      67     129 ..     656     711 ..     608     748 .. 0.66
   3 !    4.9   0.1    0.0028        17       1      44 [.     698     739 ..     698     796 .. 0.76
   4 !  202.4   0.8   1.2e-63     7e-60       2     229 .]    1009    1251 ..    1008    1251 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.018
      AsmA_2  77 nlswqgaplspdlssLsGdlsleledgqilg 107
                 +l+w++++l p  +  sG+l+  +e+g+++ 
  CTQ30236.1 399 DLAWKQWKLLPGAEHFSGSLNGSVEHGELRA 429
                 79**************************987 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0015
      AsmA_2  67 vlgGkgslelnlswqgaplspdlssLsGdlsleledgqilgvsllrdlgllkltldfrdlfge 129
                  l+G++s+ l+l+ +++  +    + +Gd++l+ +++ i+     +d +l++l+ +f++++g+
  CTQ30236.1 656 QLDGDVSARLHLNIPLDGEM---TTAKGDVRLQNNSLFIKP----LDTTLQNLSGNFSFVNGD 711
                 35556666666555555444...456777777777777777....666666655555555544 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0028
      AsmA_2   1 lgnvsgklrlkdeglrldnlrlrspggklsgsgswstkggaart 44 
                 l+n+sg+++ +++ l+ + l+++++++ l++++s +++++a  +
  CTQ30236.1 698 LQNLSGNFSFVNGDLNSQTLSATWFNQPLNLNFSTREGEKA--F 739
                 689*******************************9998652..2 PP

  == domain 4  score: 202.4 bits;  conditional E-value: 1.2e-63
      AsmA_2    2 gnvsgklrlkdeglrldnlrlrspggklsgsgswstkggaartnldlkldgvdlgallkrlglaevl.gGkgslelnlswqgaplspdlssLsGdls 97  
                  g+++g++++k+++l+l n   +++ g+l+ +g w +   ++rt+l+++l g+  +a+++ +g  + + +  ++++++l+w+  p+spd++sL+G ++
  CTQ30236.1 1009 GRIDGDVAIKGDTLTLSNGLVDTGFGRLTTNGVWVNAPSGVRTSLKGRLHGNKTDAFADFFGVSTPVkDSPFDIDYDLHWRAPPWSPDVASLNGIIK 1105
                  7899********************************9878**********************99999899*************************** PP

      AsmA_2   98 leledgqilgvs.........ll.rdlgllkltldfrdlfgeglafddikgtftienGvvttkdfklkgpaaavtvsGtvdldtetldlnvvvvppi 184 
                    l++gq++++s         ll  d+ l+kl++df+d f+eg++fd+i+ t++i++Gv++t+d+ ++g +a+++++G+vdl +++ldl++vv+p+i
  CTQ30236.1 1106 SHLGKGQFTDLStghagqllrLLsVDALLRKLRFDFSDTFSEGFYFDSINSTAWIKDGVLHTDDTLVDGLEADIAMKGSVDLVRRQLDLQAVVAPEI 1202
                  **************99976653357777777****************************************************************** PP

      AsmA_2  185 saslavvaalain....laalaaqkllsddlekiaaleyrvtGswdsPk 229 
                  sa++ v+aa+a+n    +a++aa+k+l++ ++k++ l+yr+tG++d+P+
  CTQ30236.1 1203 SATVGVAAAFAVNpivgAAVFAASKVLGPLWNKVSILRYRITGPIDQPQ 1251
                  ************************************************7 PP

>> AsmA_1  AsmA-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.33     2e+03     134     162 ..     677     705 ..     667     708 .. 0.80
   2 ?    9.1   0.0   0.00014      0.81     101     196 ..    1147    1254 ..    1128    1259 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.33
      AsmA_1 134 egkGiielkkkkldlklqlktlkslssil 162
                 ++kG + l++++l +k    tl++ls  +
  CTQ30236.1 677 TAKGDVRLQNNSLFIKPLDTTLQNLSGNF 705
                 68999********9998888888888766 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00014
      AsmA_1  101 kGykikngkinfkikkdllviekiklkgdsidiegkGiielkkkkldlklql....ktlkslssilskiPllg......yillGk.dgsist.klkv 185 
                  +G++ +  + +  ik+ +l  ++  + g ++di+ kG+++l +++ldl+  +    +    ++ ++   P++g        +lG   +++s+ +  +
  CTQ30236.1 1147 EGFYFDSINSTAWIKDGVLHTDDTLVDGLEADIAMKGSVDLVRRQLDLQAVVapeiSATVGVAAAFAVNPIVGaavfaaSKVLGPlWNKVSIlRYRI 1243
                  67777777777889999*******************************9866111133344556677778888544444233443235677536778 PP

      AsmA_1  186 kGtldnPkvkt 196 
                  +G +d+P++++
  CTQ30236.1 1244 TGPIDQPQINE 1254
                  88888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 8936.51
//
Query:       CTQ30237.1  [L=489]
Description: ribonuclease G [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-102  342.0   2.7   2.4e-102  342.0   1.8    1.4  2  RNase_E_G  Ribonuclease E/G family
      3e-07   30.7   0.6    1.6e-06   28.4   0.0    2.3  2  S1         S1 RNA binding domain
  ------ inclusion threshold ------
       0.13   12.6   0.0        0.6   10.5   0.0    2.2  1  HARE-HTH   HB1, ASXL, restriction endonuclease HTH domain


Domain annotation for each model (and alignments):
>> RNase_E_G  Ribonuclease E/G family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       0.9   5.4e+03      80     109 ..      91     120 ..      82     122 .. 0.65
   2 !  342.0   1.8    4e-106  2.4e-102       1     270 []     124     393 ..     124     393 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.9
   RNase_E_G  80 rkapsllyeeedlllrvlrdllnedieeiv 109
                 r   +l+ + +dl+++v++d l ++  +++
  CTQ30237.1  91 RDISELVRQGQDLMVQVVKDPLGTKGARLT 120
                 455677888888888888887766666655 PP

  == domain 2  score: 342.0 bits;  conditional E-value: 4e-106
   RNase_E_G   1 slaGrylVllpegkkvgvSkkiedeeererlkelleelkpeevGlIvRtaaegaseeelekdleelkkkweeilekakkrkapsllyeeedlllrvlrd 99 
                 +l++rylV++p +++vgvS++ie+e+ererlk++++e+++e+ G+I+Rtaaeg++e+e+++d+++lk+ w++++e+ k++++   ly e  l++rvlrd
  CTQ30237.1 124 TLPSRYLVFMPGASHVGVSQRIESEAERERLKKVVAEYCDEQGGFIIRTAAEGVHEQEMAADAAYLKRVWTKVMERKKRNQTRYQLYGELALAQRVLRD 222
                 69*********99999*************************************************************9999999*************** PP

   RNase_E_G 100 llnedieeivvddkelyeeikeyleevapeleekvelyeeeeplfelysiekqiekalsrkvwlksGgylvIeqTEAltvIDVNsGkftgkknleetvl 198
                 ++++++++i vd++ +ye + e+++e+ pe+++k+e+y++++p+f+l+++e++i++al+rkv+lksGgyl+I+qTEA+t+ID+N+G f+g++nl++t++
  CTQ30237.1 223 FADAQLDRIRVDSRLTYEALLEFTAEYIPEMTSKLEHYSGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGHRNLDDTIF 321
                 *************************************************************************************************** PP

   RNase_E_G 199 ktNleAaeeiarqlrLRnlgGiIviDFIdmkeeenreevleelkealkkDraktqvleitklgLveitRkrv 270
                 +tN+eA++ iarqlrLRnlgGiI+iDFIdm++e++r++vl+ l++al+kDr+kt++ ++++lgLve+tRkr+
  CTQ30237.1 322 NTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSINGFSQLGLVEMTRKRT 393
                 **********************************************************************96 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   2.6e-10   1.6e-06       4      62 ..      38     109 ..      37     121 .. 0.93
   2 ?   -0.8   0.1      0.34     2e+03      49      61 ..     464     476 ..     460     483 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 2.6e-10
                 TTCEEEEEEEEEET..TEEEEEETTTEEEEEEGGGSSSS...........CEESCHHHCEETTEEEEEEEEE CS
          S1   4 kgevveGeVtsvtk..gGafVelgngvegfvpaselsrd...........arvedpdevlkvGdevkvkvlk 62 
                 +g++++G V++v +   +afV++g +  +f++as+++ +            +v+d++e +++G+ + v+v k
  CTQ30237.1  38 VGNIYKGRVSRVLPgmQAAFVDIGLDKAAFLHASDIMPHtecvageeqkqFTVRDISELVRQGQDLMVQVVK 109
                 79************999********************99***********99******************87 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.34
                 CEETTEEEEEEEE CS
          S1  49 vlkvGdevkvkvl 61 
                 ++ vG++vkv+++
  CTQ30237.1 464 EIFVGKQVKVQIE 476
                 56799*****997 PP

>> HARE-HTH  HB1, ASXL, restriction endonuclease HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0001       0.6      13      53 ..      83     124 ..      76     142 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0001
                 HH-S-EEHHHHHHHHHHHTTS-....GGHHGCHHH.HHHHHHH CS
    HARE-HTH  13 eegrpltvkeIwekiqekgliklt..gktpeatlaaqlytdik 53 
                 ee + +tv++I e  +++g + ++   k p+ t +a+l+tdi+
  CTQ30237.1  83 EEQKQFTVRDISEL-VRQGQDLMVqvVKDPLGTKGARLTTDIT 124
                 67789999999775.68888888888****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3598.54
//
Query:       CTQ30238.1  [L=193]
Description: putative septum formation protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-59  200.7   0.0    1.5e-59  200.5   0.0    1.0  1  Maf       Maf-like protein


Domain annotation for each model (and alignments):
>> Maf  Maf-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.5   0.0   8.6e-64   1.5e-59       2     165 ..       4     184 ..       3     185 .. 0.94

  Alignments for each domain:
  == domain 1  score: 200.5 bits;  conditional E-value: 8.6e-64
                 EEEE---HHHHHHHHCT-..EEEE------.......HHHHHHHHHHHHHHHHH.......TCEEEEEEEEEE...CE---SSHHHHHHHHHHHTTSEE CS
         Maf   2 liLASaSprRkelLeqlg..fevvpsdvde.......aeelvlrlAeaKaeava.......alvigaDtvvvl...ilgKPkdeeealemLkklsgrth 81 
                 l+LAS SprR+elL+qlg  fe +++ ++e       a+++v+rlA++Ka+a +         v+gaDt+v+l   +l+KP+d+e+a++mL+ lsg+th
  CTQ30238.1   4 LYLASGSPRRQELLTQLGlaFERLVPGIEEqrqpqesAQHYVVRLAREKAQAGVamatrdlP-VLGADTIVILngeVLEKPRDAEHAAAMLRLLSGHTH 101
                 89****************999********9999*99*899***********98867777633.*********96655********************** PP

                 EEEEEEEEEEEEE..EEEEEEEEEE----HHHHHHHHHCTSGCCSTTS--TTCGGGGGCEEEECS-HHHHHT--HHHHHHHHCC CS
         Maf  82 evvTgvavlkekevksfvettevtfkelsdeeieaYvatgepldkAGaygiqgllglalverieGsysnVvGLPlaellelLke 165
                 +v+T+va+++++++  +++ tevtf++ls+++i++Yva+gepldkAGaygiqgl g+++v++i+Gsy++VvGLPl e++elL++
  CTQ30238.1 102 QVMTAVALADKQQTLDCLVVTEVTFRRLSEQDIADYVASGEPLDKAGAYGIQGL-GGCFVRKINGSYHAVVGLPLVETYELLSN 184
                 **********8899999************************************9.777************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1439.28
//
Query:       CTQ30239.1  [L=162]
Description: cell wall structural complex MreBCD transmembrane component MreD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-45  154.0  19.8    3.7e-45  153.9  19.8    1.0  1  MreD      rod shape-determining protein MreD


Domain annotation for each model (and alignments):
>> MreD  rod shape-determining protein MreD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9  19.8   2.1e-49   3.7e-45       2     160 .]       5     155 ..       4     155 .. 0.99

  Alignments for each domain:
  == domain 1  score: 153.9 bits;  conditional E-value: 2.1e-49
        MreD   2 rfllqwlllislfllalvlglipmpvstlvlrPhflllvllywvialpervgiitafvlGllyDvlygsllGvyalvlslilylvaklqkvlrlnrrfl 100
                 r++++w++++s fl+al+l+++p+p ++ v+rP+++ll+llyw++alp+rv+++t+fv+G+++D+++gs+lGv+al ls+++ylva+ ++++r+    l
  CTQ30239.1   5 RSQGRWVIWLS-FLIALLLQIMPWPADISVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRALSLSIVAYLVALKYQLFRN----L 98 
                 8899*******.**********************************************************************************....* PP

        MreD 101 pavlqvlllellvlvialliglaeldligfvvyrllPtlllnfllailLvppvfkLlrkv 160
                 ++++q+l+++ll+l +++++++ae+ l+++v++r  P+++++ +++++L+p++f+L+rkv
  CTQ30239.1  99 ALWQQALVVMLLSLAVDIIVFWAEF-LVINVSFR--PEVFWSSVVNGILWPWLFLLMRKV 155
                 *************************.********..*********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1265.48
//
Query:       CTQ30240.1  [L=330]
Description: cell wall structural complex MreBCD transmembrane component MreC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-37  126.5   0.3    1.1e-36  126.0   0.3    1.2  1  MreC      rod shape-determining protein MreC


Domain annotation for each model (and alignments):
>> MreC  rod shape-determining protein MreC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   0.3     6e-41   1.1e-36       1     149 [.     123     269 ..     123     270 .. 0.96

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 6e-41
                 EEEE-GCCTTTEEEES--GGGT--TT-EEEETTEEEEEEEEE-SS-EEEEETTSCCE.EEEEEE.CTTEEEEEEEETTTTEEEEEEE.CT-..--TT-E CS
        MreC   1 VisrspdnwnssltIdkGskdgvkkgmpVvsgkglVGkVtevgknssrVllitdssssvsvkvkrtgergilegkddekkeleleylpkeaadvkkgdl 99 
                 Vis   d+++++++IdkGs +gv +g+pV+s+kg+VG+V+ v k +srVlli+d +++++++v r++ r i+ g +  ++ l+le+lp++ +d+++gd 
  CTQ30240.1 123 VISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQVVAVAKMTSRVLLICDATHALPIQVLRNDIRVIAAG-NGCTDDLQLEHLPAN-TDIRVGDV 219
                 899999********************************************************999999999988.456889*********.9******* PP

                 EEEE-TTSSS-CCEEEEEEEEEEE-TTSSEEEEEEEESS--SS--EEEEE CS
        MreC 100 vvTsglggvfpkglpvGtVekveedkeglfkkievkpavdfdkleeVlVi 149
                 +vTsglgg fp+g+pvG V++v+ d++ ++  i+++p + +++l++ l++
  CTQ30240.1 220 LVTSGLGGRFPEGYPVGVVSSVKLDTQRAYTVIQARPTAGLQRLRYLLLL 269
                 *********************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2734.15
//
Query:       CTQ30241.1  [L=347]
Description: rod shape-determining protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.1e-150  499.5   3.6   3.8e-150  499.2   3.6    1.0  1  MreB_Mbl  MreB/Mbl protein
    3.8e-13   48.5   0.3    8.2e-13   47.4   0.1    1.6  2  HSP70     Hsp70 protein
    4.6e-11   43.1   0.2    1.5e-10   41.4   0.0    1.9  2  FtsA      Cell division protein FtsA
    5.1e-10   38.5   0.1    3.5e-06   25.9   0.0    2.2  2  Actin     Actin
    2.4e-07   30.1   0.1     0.0053   15.8   0.0    2.4  3  PilM_2    Type IV pilus assembly protein PilM;
    0.00058   19.4   0.1     0.0011   18.5   0.1    1.4  1  Ppx-GppA  Ppx/GppA phosphatase family
     0.0026   16.7   0.2     0.0041   16.0   0.2    1.3  1  EutA      Ethanolamine utilisation protein EutA
     0.0042   16.1   0.5      0.011   14.7   0.1    1.8  2  DDR       Diol dehydratase reactivase ATPase-like domain


Domain annotation for each model (and alignments):
>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  499.2   3.6  1.7e-153  3.8e-150       2     324 ..      11     338 ..      10     340 .. 0.99

  Alignments for each domain:
  == domain 1  score: 499.2 bits;  conditional E-value: 1.7e-153
                 SEEEEEE-SSEEEEEETTTEEEEEEES-EEEETT....T--EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-S.S--E CS
    MreB_Mbl   2 kdlgiDLGtantlvyvkgkgivlnepsvvAikkk....tkkvlavGeeAkkmlgktpgnikavrPlkdGviadlevaeellkyfikkvkkkksl.skpr 95 
                 +dl+iDLGtantl+yvkg+givlnepsvvAi+++     k+v+avG+eAk+mlg+tpgni a+rP+kdGviad+ v+e++l++fik+v++++++ ++pr
  CTQ30241.1  11 NDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQDragsPKSVAAVGHEAKQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSFMrPSPR 109
                 89*******************************9888899**************************************************9988789** PP

                 EEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHHHHHHHHHSE CS
    MreB_Mbl  96 vvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevavislggivtsksvrvaGdeldeaiikyirkkynl 194
                 v++cvP g+t+verrA++e+a+ aGarev+lieep+aAAiGaglpv+e++g+mvvdiGggttevavisl+g+v+s+svr++Gd++dea+i+y+r++y  
  CTQ30241.1 110 VLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAVINYVRRNYGS 208
                 *************************************************************************************************** PP

                 E--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHH CS
    MreB_Mbl 195 liGertaekikieigsavkeeeeekmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdrgivltGGgallkgldkll 293
                 liGe+tae+ik+eigsa++ +e +++e++Gr+l++g+p+ ++++s+e+ eal+ep++ iv+av  +Le++ppeLa+di +rg+vltGGgall++ld+ll
  CTQ30241.1 209 LIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLL 307
                 *************************************************************************************************** PP

                 HHHHSS-EEE-SSTTTHHHHHHHHTTC-HHH CS
    MreB_Mbl 294 seetglpvkvaedpltcvakGtgkvleklkk 324
                 +eetg+pv vaedpltcva+G gk+le++++
  CTQ30241.1 308 MEETGIPVVVAEDPLTCVARGGGKALEMIDM 338
                 ***************************9886 PP

>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.34   7.6e+02       4      29 ..      15      44 ..      13      82 .. 0.63
   2 !   47.4   0.1   3.7e-16   8.2e-13     132     239 ..     106     207 ..      84     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.34
                EEEXSSEEEEEEEETT....EEEEEXXTTS CS
       HSP70  4 iDLGttnsvvavmegg....kievianeeg 29
                iDLGt n+++ v  +g    +++v+a  + 
  CTQ30241.1 15 IDLGTANTLIYVKGQGivlnEPSVVAIRQD 44
                999999999988665422223444444444 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 3.7e-16
                 BEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSSXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHH CS
       HSP70 132 kvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGggtfdvSilelekGvfevkaTagDthlGGedfDeal 230
                 +   + + vP   +  +R+a+++ ++ AG   + ++ ep Aaa+  Gl  ++     +v+D+Gggt++v +++l+  v+     +   ++GG+ fDea+
  CTQ30241.1 106 PSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSE-ATGSMVVDIGGGTTEVAVISLNGVVY-----SSSVRIGGDRFDEAV 198
                 55678899*******************************************9.7777899**************86544.....45679********** PP

                 HHHHHHHHH CS
       HSP70 231 vehlveefk 239
                 ++++++++ 
  CTQ30241.1 199 INYVRRNYG 207
                 ****99886 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.9   4.3e+03       3      20 ..      15      32 ..      13      59 .. 0.70
   2 !   41.4   0.0   6.8e-14   1.5e-10       1      86 [.     162     311 ..     162     328 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.9
                EEE-SSSEEEEEEETTEE CS
                xxxxxxxxxxxxxxxxxx RF
        FtsA  3 vDiGagktdvavaedgal 20
                +D+G+  t + v  +g +
  CTQ30241.1 15 IDLGTANTLIYVKGQGIV 32
                888888887777666554 PP

  == domain 2  score: 41.4 bits;  conditional E-value: 6.8e-14
                 EEEEE-SSSEEEEEEETTEEEEEEEES--HHHHHHH......HHHHHT--HHHHHHHHHHH--S--EEEEEHHHHH....................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................... RF
        FtsA   1 alvDiGagktdvavaedgalvhlrvigvggngitkd......iakalrtaveeAerikikyGsalaekeigrkels....................... 70 
                 ++vDiG+g+t+vav++ +++v+++++ +gg+ +++         ++  +  ++Aerik+++Gsa++  e+ + e+                        
  CTQ30241.1 162 MVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAvinyvrRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRgrnlaegvprgftlnsneileal 260
                 59**********************************655533333336678999************555554444466666888888889999999999 PP

                 ...................................GGGGSTTHHHHHHHHH CS
                 ...................................xxxxxxxxxxxxxxxx RF
        FtsA  71 ...................................ggsalpnleelaeral 86 
                                                    gg+ l+nl++l+ + +
  CTQ30241.1 261 qepltgivsavmvaleqcppelasdisergmvltgGGALLRNLDRLLMEET 311
                 999999999999999999999999999*****************9988774 PP

>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.6e-09   3.5e-06      31     191 ..      36     206 ..      13     233 .. 0.78
   2 !   10.4   0.0   7.8e-05      0.18     299     344 ..     261     306 ..     242     319 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.6e-09
       Actin  31 pslvgkprgrkvea..klyvgde..alt..krpelevrspvedGvvedwdaveelwehvlkeelkvd..peehpllltepplnppkqrekalEivfEkf 121
                 ps+v+  ++r  +      vg+e  ++     +++   +p++dGv+ d  ++e++++h +k+  ++   + + ++l+  p+ +++ +r  + E +    
  CTQ30241.1  36 PSVVAIRQDRAGSPksVAAVGHEakQMLgrTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNSfmRPSPRVLVCVPVGATQVERRAIRESA-QGA 133
                 555554444433223356777775433343367889999*********************997555455678889999***********999987.688 PP

       Actin 122 kvpalylaksavlsafasgks.....tglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellsskn 191
                 +   ++l ++++ +a  +g+       ++vvD+G ++t v+ +  + v+  + +   +gG+  +e + ++++++ 
  CTQ30241.1 134 GAREVFLIEEPMAAAIGAGLPvseatGSMVVDIGGGTTEVAVISLNGVVYSSSV--RIGGDRFDEAVINYVRRNY 206
                 99*****************998888789*************9976666666544..5899999999888888754 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 7.8e-05
       Actin 299 kskllgiselivaainacdvdlrpeLlan.ivvtGGnsllpglteRl 344
                 ++ l+gi + ++ a+++c+++l +++ ++  v+tGG +ll++l   l
  CTQ30241.1 261 QEPLTGIVSAVMVALEQCPPELASDISERgMVLTGGGALLRNLDR-L 306
                 66789*********************98769**********9854.4 PP

>> PilM_2  Type IV pilus assembly protein PilM;
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.2   2.8e+03     162     193 ..      87     122 ..      69     131 .. 0.46
   2 !   15.8   0.0   2.4e-06    0.0053     178     243 ..     157     226 ..     137     233 .. 0.84
   3 !   11.6   0.0   4.4e-05     0.099     278     306 ..     291     319 ..     281     336 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.2
      PilM_2 162 leraleliasqlpdkgkek....vvaivdigasrtt 193
                 +e+ l+++++q+ +++  +    v+ +v +ga++++
  CTQ30241.1  87 TEKMLQHFIKQVHSNSFMRpsprVLVCVPVGATQVE 122
                 333333333333333333333334555555555544 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.4e-06
      PilM_2 178 kekvvaivdigasrttlsvlrdgkivYtreqafGgeqltqeiv....rrYglsleeaekkkrsgslPedy 243
                 +++  ++vdig  +t+++v++ + +vY+     Gg+++ + ++    r+Yg    ea ++++++++++ y
  CTQ30241.1 157 EATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAVInyvrRNYGSLIGEATAERIKHEIGSAY 226
                 556779******************************9998875333378**9999*99999999999888 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 4.4e-05
      PilM_2 278 ilLaGGtaslpgleelleeelgisttvan 306
                 ++L+GG a l +l++ll ee+gi+++va+
  CTQ30241.1 291 MVLTGGGALLRNLDRLLMEETGIPVVVAE 319
                 79*************************96 PP

>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   4.8e-07    0.0011     111     152 ..     158     199 ..     142     242 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.8e-07
                 -SSEEEEEEETTEEEEEEEETTEEEEEEEES--CCHHHHHHS CS
    Ppx-GppA 111 kgrglviDiGGGStElvlgeekevsklvSlplGavrlterfl 152
                 +   +v+DiGGG tE++++  + v+ ++S ++G  r+ e ++
  CTQ30241.1 158 ATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAVI 199
                 444589***************************999988765 PP

>> EutA  Ethanolamine utilisation protein EutA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   1.8e-06    0.0041     138     203 ..     156     215 ..     142     260 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.8e-06
        EutA 138 skekstrvlniDiGGGtsnlalfkeGevidtacldvGGrlikidkdtkkityispklkkiieelgl 203
                 s+ +    + +DiGGGt+ +a+++   v+ ++++ +GG    +d+  + i+y++ +  ++i e + 
  CTQ30241.1 156 SEAT--GSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDR--FDE--AVINYVRRNYGSLIGEATA 215
                 4433..34558**************99***********84..554..6788888888777766554 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   5.1e-06     0.011     116     162 ..     142     188 ..      78     222 .. 0.78
   2 ?   -1.0   0.0      0.31   6.9e+02     256     297 ..     268     310 ..     265     319 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.1e-06
         DDR 116 vEaemAilGalttPGtekplailDlGaGstDaalieeegevkavhlA 162
                  E+ +A++Ga       + ++++D+G+G+t+ a+i+ +g v +  + 
  CTQ30241.1 142 EEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVR 188
                 5778889999888888999******************9998765444 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.31
         DDR 256 vtnalRalkkvsptgnirdid..fvvlvGgsalDfEipelvtda 297
                 v+ ++ al++  p+    di+   +vl Gg+al  ++ +l++++
  CTQ30241.1 268 VSAVMVALEQCPPEL-ASDISerGMVLTGGGALLRNLDRLLMEE 310
                 556667888887765.33333115899*****999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       257  (0.0143343); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2756.30
//
Query:       CTQ30242.1  [L=646]
Description: inner membrane associated factor modulating specific RNAseE dependent RNA degradation pathways [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-34  118.1   0.1    7.9e-34  117.2   0.1    1.4  1  EAL       EAL domain
    4.5e-31  107.1   0.1    1.1e-30  105.9   0.1    1.7  1  GAPES4    Gammaproteobacterial periplasmic sensor domain
    5.9e-26   91.1   0.0    9.7e-26   90.4   0.0    1.4  1  GGDEF     Diguanylate cyclase, GGDEF domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.1   1.3e-37   7.9e-34       4     236 ..     403     628 ..     400     630 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 1.3e-37
                 HHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHHCHTT--EEEEEE--CHHCC-CCH CS
         EAL   4 lrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrlaeqldadiklsinlspasladeef 102
                 ++++l+++  +ly  P v +++g+v + e ++r+ + ++++i ++e++p++ ++gl++e+dr+ + + l  l  +     ++ +l+++ls +sl ++ f
  CTQ30242.1 403 IEQMLSRGGPRLYQKPAV-TRDGRVHHRELMSRMYDGKEEVI-AAEYMPMVLQFGLAEEYDRLQVTRLLPFLGFW-----PEENLALQLSVESLIRPRF 494
                 5688999999********.9*****************99987.99*************************99999.....4679*************** PP

                 HHHHHHHH.HCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HHHHTTTTTSCHHHHHHHHCHHH CS
         EAL 103 leelrell.kqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsylarlppdiiKldrslladleedeeaqalvkalial 200
                  ++lr++l +  + +++r+++e++e+++ ++ + lq  v++ + alG+r+a+ ++g      s ++ l+ + iKl+  l +++e+ +e+q lv++l+++
  CTQ30242.1 495 QRWLRDALmQCEKSQRQRIIFELAEADVCQYIGRLQ-PVMRLVNALGVRVAVVQAGLTLVGTSWIKQLDAELIKLHPGLARNIEKRSENQLLVQSLVEA 592
                 ************************************.************************************************************** PP

                 HCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT- CS
         EAL 201 akelgikvvaegVeteeqlealrelgcdlvQGylls 236
                 +k + ++v a+gV +++++  l + g++ +QG +++
  CTQ30242.1 593 CKGMPMQVFATGVRSRSEWLVLSQCGVTGGQGEFFA 628
                 ***********************************8 PP

>> GAPES4  Gammaproteobacterial periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.1   1.8e-34   1.1e-30       2      98 .]      34     130 ..      33     130 .. 0.99

  Alignments for each domain:
  == domain 1  score: 105.9 bits;  conditional E-value: 1.8e-34
      GAPES4   2 sqeklehrlqavatvvDkeLltespqslqrwLpklmkaadivelelssgdktvYslklpesyrpedsanrlrevelpLlkhpgmslrlkyvdPlasy 98 
                 +++k+e+r+qavat++D++L+t+s+++l+++L++lm++++iv+++++ ++k++Ys+++p+syrp +s++++re++++ lkhpg++l+l+yvdP+ +y
  CTQ30242.1  34 IENKVENRVQAVATMLDNRLITTSFDKLEPQLDELMTPIEIVHIDFMLNGKPLYSHSRPDSYRPLGSHEQFREITVQSLKHPGITLHLVYVDPMVNY 130
                 589********************************************************************************************98 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.0   1.6e-29   9.7e-26       1     160 [.     224     380 ..     224     381 .. 0.94

  Alignments for each domain:
  == domain 1  score: 90.4 bits;  conditional E-value: 1.6e-29
                 HSB-CCCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-T..TSEEEEESSSEEEEEEECSSHHHHH CS
       GGDEF   1 aahDslTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrk..sdlvaRlggdeFaillpetsseeaa 97 
                 aa Ds TgL+NR +++++l+++l+++++ +   +v+++ l +F  + d++G ++++e   ++ + Ls+++++  + l+aR++  +Fa+llp+ +++ea+
  CTQ30242.1 224 AAQDSKTGLNNRLFFDNQLATLLEDQEKVGAYGIVMMIRLPEFDLLRDNWGRAAAEEHYFTLINLLSTFIMRypGALLARYHRSDFAVLLPHRTLKEAD 322
                 679***********************999******************************************999*********************9999 PP

                 HHHHHHHHHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSS CS
       GGDEF  98 elaerirrllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrn 160
                 ++a ++ +++++l  +   +  +++ +++iGi++++  +g+++++++++A+ a ++a  +g n
  CTQ30242.1 323 SIAGLLLKAMDALPPT---RILDRDDMMHIGICSFR--SGQSAAQVMEHAEAATRNAVLQGSN 380
                 9999999999999886...55566679********6..*******************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4778.14
//
Query:       CTQ30243.1  [L=333]
Description: exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-30  103.8   0.0    1.2e-29  103.1   0.0    1.3  1  Oxidored_molyb  Oxidoreductase molybdopterin binding domain


Domain annotation for each model (and alignments):
>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   6.7e-34   1.2e-29       8     172 .]     107     266 ..     100     266 .. 0.93

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 6.7e-34
                     GCCC-EEEEESTCSSEEEEEHHHHHH.C-EEEEEEEEE-TTTTHHHHCHH--SS----TTSEEEEEEEEEEHHHHHHHTTB-ETT..EEEEEEEE CS
  Oxidored_molyb   8 dpekwrlevdglvekplslslddLka.lpavevtatlqCagnrrkelnkkkvkglqwgagavsnaeWtGvrlrdvLekagvkkpearhvvfegad 101
                     +++ w+l++ g+v+kpl+l  ddL + +p +e++++++C++               w    ++ + W G++l+++L+ ++++ ++ar+v f+ + 
      CTQ30243.1 107 RTDPWTLTIGGEVAKPLTLDHDDLTKrFPLEERIYRMRCVE--------------AW----SMVVPWVGFPLHKLLALVEPT-SSARYVAFKTLY 182
                     4678********************988**************..............8*....9*******************7.9*********85 PP

                     E-T.............CCTEEEEEEEHHHHCTTT-EEEEEETTEE--CCCTTT-EEE-TTB-GGGSBTTEEEEEEESS---SHH CS
  Oxidored_molyb 102 eel.............eeskygasiplekaleddvlLAyemngepLppdhGyPlRlvvpglvgarsvKwlkrievsdeesegyw 172
                     ++                 +y + ++l++a++  +lL + + g++Lpp++G+P+Rl vp+ +g++ +K + +ie+++e+ ++ w
      CTQ30243.1 183 APDqmpgqkdrfigggLAYPYVEGLRLDEAMHPLTLLTVGVYGKALPPQNGAPVRLTVPWKYGFKGIKSIVSIELTRERPPTTW 266
                     4335678888999999999************5579******************************************9998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2567.42
//
Query:       CTQ30244.1  [L=202]
Description: heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-16   58.3   7.8    7.7e-16   58.3   7.8    2.3  3  Ferric_reduct  Ferric reductase like transmembrane component


Domain annotation for each model (and alignments):
>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.5    0.0005       8.9      44      99 ..       9      63 ..       7      70 .. 0.89
   2 !   58.3   7.8   4.3e-20   7.7e-16       2     124 ..      48     161 ..      47     161 .. 0.91
   3 ?   -2.5   0.4      0.28   5.1e+03      93     111 ..     184     198 ..     177     201 .. 0.43

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0005
  Ferric_reduct 44 afllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilaitSlk 99
                   ++l +llH +++l   + f a  +  l+++  k+  + +G +al +l++ +++S +
     CTQ30244.1  9 VWLKVLLHLAGFLPLVWLFWAGHQGYLSADPAKDIQHFTGRMALKFLLATLLVS-P 63
                   677899*******99999999999999**********************99999.3 PP

  == domain 2  score: 58.3 bits;  conditional E-value: 4.3e-20
  Ferric_reduct   2 GiaalillplalllalRnnflepltglsldklll.fHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilait 96 
                    G++al  l ++ll++       pl ++ ++ ll+ ++++lg+++f++a+lH + y+l +l  +  +   l ++++++py +lG++++++l++la+t
     CTQ30244.1  48 GRMALKFLLATLLVS-------PLARYAKQPLLIrVRRLLGLWCFAWATLHLTSYTLLELGIN--NLALLGSEIITRPYLTLGMISWAILLALAVT 134
                    666666666666666.......99*******8888*************************988..589999************************* PP

  Ferric_reduct  97 SlkfirrrlsyelFyylHhllyvaylll 124
                    S++ + r+l+ + + +lH ++y++++l+
     CTQ30244.1 135 STQAMQRKLG-RRWQLLHNFVYLVAILA 161
                    ******8888.**************985 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.28
  Ferric_reduct  93 laitSlkfirrrlsyelFy 111
                      +     +r + + + ++
     CTQ30244.1 184 AGL---LTWRYKKF-RQWW 198
                    333...34674444.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1583.12
//
Query:       CTQ30245.1  [L=150]
Description: 3-dehydroquinate dehydratase, type II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-61  204.2   0.2    6.5e-61  204.0   0.2    1.0  1  DHquinase_II   Dehydroquinase class II
  ------ inclusion threshold ------
      0.099   11.7   0.0       0.11   11.5   0.0    1.0  1  Rotavirus_VP1  Rotavirus VP1 C-terminal domain


Domain annotation for each model (and alignments):
>> DHquinase_II  Dehydroquinase class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.0   0.2   7.3e-65   6.5e-61       2     137 ..       7     142 ..       6     143 .. 0.99

  Alignments for each domain:
  == domain 1  score: 204.0 bits;  conditional E-value: 7.3e-65
                   EEEEE-TTGGGTTTSTCCCC-SS-HHHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHHCTTT.TEEEEE-GGGGGT-HHHHHHHHTSSS-EEEEE CS
  DHquinase_II   2 ilvlnGpNlnllgkrepeiygsetledieeelkekaeelgvelevfqsnhEgelidriqeakekvdgiviNpgaythtSvalrdalaaveipvvEvh 98 
                   il+lnGpN+n+lg+repe yg  tl++i ++l+++a++l+v+l+++qsn+E++lidri++ak++vd i+iNp+a+thtSva+rdal av+ip++E+h
    CTQ30245.1   7 ILLLNGPNINMLGTREPEKYGPLTLAEIVNRLTSEAAALNVSLDHLQSNAEHALIDRIHQAKDNVDYILINPAAFTHTSVAIRDALLAVNIPFIEIH 103
                   9************************************************************************************************ PP

                   SS-GGGS-GGGG--SSGGGSSEEEESSTTHHHHHHHHHH CS
  DHquinase_II  99 lsnvhaReefrhksvlsdvakgviaGlglegYelaleal 137
                   lsnvhaRe+fr++s+lsdva+gvi+Glg++gY++al+++
    CTQ30245.1 104 LSNVHAREPFRQHSYLSDVAAGVICGLGADGYSYALQTA 142
                   ************************************976 PP

>> Rotavirus_VP1  Rotavirus VP1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.3e-05      0.11      50     150 ..      39     141 ..      29     149 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.3e-05
  Rotavirus_VP1  50 vsdgialte.kaklnsyapialekrrdqisills.llqkpvtfkseskvtindvlrdik.gfikvdsdavlpkeeqktmpllpdivkrilsyiglr 142
                     s+  al     +l+s a  al  r  q    +  +l +p++f   + v+i d l  ++ +fi++  + v  +e  +    l d+   ++  +g+ 
     CTQ30245.1  39 TSEAAALNVsLDHLQSNAEHALIDRIHQAKDNVDyILINPAAFTH-TSVAIRDALLAVNiPFIEIHLSNVHAREPFRQHSYLSDVAAGVICGLGAD 133
                    55555554313578999999999999998877752789*****99.9999*9998887559*****999999999999999999999999999999 PP

  Rotavirus_VP1 143 tydieidg 150
                     y +  + 
     CTQ30245.1 134 GYSYALQT 141
                    99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1185.09
//
Query:       CTQ30246.1  [L=155]
Description: acetyl CoA carboxylase, BCCP subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-25   87.8   0.8    3.1e-25   87.8   0.8    1.7  2  Biotin_lipoyl    Biotin-requiring enzyme
    4.3e-05   23.2   1.1      0.069   13.0   0.2    2.6  2  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
      0.018   15.0   1.1      0.037   14.0   0.8    1.8  2  RnfC_N           RnfC Barrel sandwich hybrid domain
      0.062   13.2   0.7       0.15   12.0   0.2    1.9  2  GCV_H            Glycine cleavage H-protein
       0.16   11.6   0.4          2    8.2   0.1    2.4  2  Prot_ATP_OB_N    Proteasomal ATPase OB N-terminal domain


Domain annotation for each model (and alignments):
>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.84     3e+03      10      25 ..      11      27 ..       8      30 .. 0.71
   2 !   87.8   0.8   8.7e-29   3.1e-25       3      73 .]      82     154 ..      80     154 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.84
                   EEEEE..ECSESSSTTC CS
  Biotin_lipoyl 10 esveeg.vvevlvkvGd 25
                   e+vee+ + e  +++G+
     CTQ30246.1 11 ELVEESgISELEISEGE 27
                   66777778888777776 PP

  == domain 2  score: 87.8 bits;  conditional E-value: 8.7e-29
                    EEESSSEEEEEE...ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl   3 iksPmiGesveeg..vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73 
                    ++sPm+G++++++   ++ +v+vG+kV+ g++l++veamKm+++iea+kaGvvk il+++G+ ve +++l++i
     CTQ30246.1  82 VRSPMVGTFYRTPspDAKAFVEVGQKVNVGDTLCIVEAMKMMNQIEADKAGVVKAILIESGQPVEFDEPLVVI 154
                    89********************************************************************997 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   0.00016      0.56      17      42 ..     101     126 ..      98     128 .. 0.86
   2 !   13.0   0.2   1.9e-05     0.069       4      33 ..     125     154 ..     124     155 .] 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00016
  Biotin_lipoyl_2  17 nVkdGqrVkaGdvLaelDsralqlal 42 
                      +V+ Gq V+ Gd+L + +  +  +++
       CTQ30246.1 101 FVEVGQKVNVGDTLCIVEAMKMMNQI 126
                      6999***********99988887776 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.9e-05
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdGqrVkaGdvLael 33 
                      +I a+ +G+V++++++ Gq V+    L+++
       CTQ30246.1 125 QIEADKAGVVKAILIESGQPVEFDEPLVVI 154
                      799******************988877776 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.45   1.6e+03      64      77 ..      68      81 ..      27      87 .. 0.67
   2 ?   14.0   0.8     1e-05     0.037      41      81 ..      97     138 ..      64     155 .] 0.81

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.45
      RnfC_N 64 fvsapvhasvsGtV 77
                   ap  a +sG++
  CTQ30246.1 68 AAEAPAKAEISGHI 81
                33556666666665 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1e-05
      RnfC_N  41 pakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaie 81 
                  ak+ v+vg+kV+ G+ +   e+  ++ ++ a  +G Vkai 
  CTQ30246.1  97 DAKAFVEVGQKVNVGDTLCIVEAmKMMNQIEADKAGVVKAIL 138
                 6999************9888777556999***********95 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5   5.4e+03      60      72 ..      70      82 ..      54      84 .. 0.68
   2 ?   12.0   0.2   4.1e-05      0.15      40      72 ..     103     135 ..      99     153 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
                EEEEE-SSSEEEE CS
       GCV_H 60 asevyapvsGevv 72
                 ++  a++sG++v
  CTQ30246.1 70 EAPAKAEISGHIV 82
                3455677888887 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.1e-05
                 -TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEE CS
       GCV_H  40 evgtkvkkgeslaavEsvKaasevyapvsGevv 72 
                 evg+kv+ g++l +vE+ K+  ++ a+  G v 
  CTQ30246.1 103 EVGQKVNVGDTLCIVEAMKMMNQIEADKAGVVK 135
                 89************************9999875 PP

>> Prot_ATP_OB_N  Proteasomal ATPase OB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00055         2      35      57 ..     100     122 ..      93     125 .. 0.86
   2 ?    1.0   0.0     0.096   3.4e+02      37      53 ..     139     155 .]     134     155 .] 0.88

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00055
  Prot_ATP_OB_N  35 eeLrpGqeVlLnEalvvVealgy 57 
                    +  ++Gq V +++ l +Vea++ 
     CTQ30246.1 100 AFVEVGQKVNVGDTLCIVEAMKM 122
                    5679***************9875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.096
  Prot_ATP_OB_N  37 LrpGqeVlLnEalvvVe 53 
                    ++ Gq V  +E lvv+e
     CTQ30246.1 139 IESGQPVEFDEPLVVIE 155
                    688************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 1364.17
//
Query:       CTQ30247.1  [L=449]
Description: biotin carboxylase (A subunit of acetyl-CoA carboxylase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-85  286.1   0.1      2e-85  285.6   0.1    1.3  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    3.4e-44  149.9   0.0    7.7e-44  148.7   0.0    1.6  1  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    4.3e-38  129.7   0.0    9.2e-38  128.7   0.0    1.6  1  Biotin_carb_C    Biotin carboxylase C-terminal domain
    4.3e-08   33.4   0.0    7.3e-08   32.6   0.0    1.4  1  ATP-grasp_3      ATP-grasp domain
    4.9e-08   32.7   0.0    1.2e-07   31.5   0.0    1.6  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
      5e-08   32.7   0.0      1e-07   31.7   0.0    1.4  1  ATP-grasp        ATP-grasp domain
     0.0061   16.3   0.0      0.011   15.6   0.0    1.4  1  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
  ------ inclusion threshold ------
      0.034   13.7   0.0       0.18   11.4   0.0    2.1  4  ATP-grasp_4      ATP-grasp domain


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.6   0.1   9.1e-89     2e-85       1     210 [.     115     323 ..     115     324 .. 0.99

  Alignments for each domain:
  == domain 1  score: 285.6 bits;  conditional E-value: 9.1e-89
                  SHHHHHHHHHHTT-BBSSEECSS.BSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEE CS
  CPSase_L_D2   1 Dkesakealkkinvpvvpssaap.vetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEv 97 
                  Dk+sa +a+kk++vp+vp+s++p +++++ + a ak+igyPviika+ g+GG+Gmrv+r+++ela++++++ aeakaaf n++v++ek+l++p++iE+
   CTQ30247.1 115 DKVSAITAMKKAGVPTVPGSDGPlTDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFNNDMVYMEKYLENPRHIEI 212
                  99********************98899*********************************************************************** PP

                  EEEEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--H CS
  CPSase_L_D2  98 evlrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldl 195
                  +vl+D +gn+i+++er++s+q+r+qkv+e+AP++ +t+e r++++e+++k++ ++g++gagt+efl++  ++e+y+iE+NtR++ve++++e++TG+dl
   CTQ30247.1 213 QVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE--NGEFYFIEMNTRIQVEHPVTEMITGVDL 308
                  ********************************************************************..5*************************** PP

                  HHHHHHHHTT--GCG CS
  CPSase_L_D2 196 vkeaakialgekLee 210
                  +ke+++ia+g++L+ 
   CTQ30247.1 309 IKEQLRIAAGQPLSI 323
                  ************985 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.7   0.0   3.4e-47   7.7e-44       1     110 []       1     110 [.       1     110 [. 0.98

  Alignments for each domain:
  == domain 1  score: 148.7 bits;  conditional E-value: 3.4e-47
                    ---EEEE---HHHHHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHHHH CS
  Biotin_carb_N   1 kikkvlianrGeiAvriiravrelgietvavyseedanslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGflsEnaefaeave 96 
                    +++k++ianrGeiA+ri+ra++elgi+tvav+s++d++ +hv +ade+v++gpa++ +sYlni +i++aa+ +ga a+hpGyGflsEna+fae+ve
     CTQ30247.1   1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVE 96 
                    578********************************************************************************************* PP

                    HTT-EESSS-HHHH CS
  Biotin_carb_N  97 eagivfiGPsaeal 110
                    ++g++fiGP+a+++
     CTQ30247.1  97 RSGFIFIGPKADTI 110
                    **********9876 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.7   0.0   4.1e-41   9.2e-38       1     107 [.     336     441 ..     336     442 .. 0.99

  Alignments for each domain:
  == domain 1  score: 128.7 bits;  conditional E-value: 4.1e-41
                    EEEEESEETTTTTEE--CE-SEEE---STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEESS-BSHHHHHHHHH-HHH CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelpegpgvRvdsgveegsevspyyDsllaKlivhgetreealarlrraLaelrieGvktnieflrailedeef 96 
                    e+RinaEdp++ flps+Gk+t+++ p+g gvR++s++++g++v+pyyDs+++Kli++ge+r+ a+ar+++aL+el i+G+ktn+++  +i++de+f
     CTQ30247.1 336 ECRINAEDPNT-FLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYGESRDVAIARMKNALQELIIDGIKTNVDLQMRIMSDENF 430
                    8********99.************************************************************************************ PP

                    HHT---TTTCC CS
  Biotin_carb_C  97 akgeldtkfle 107
                    ++g +++++le
     CTQ30247.1 431 QHGGTNIHYLE 441
                    *********98 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   3.3e-11   7.3e-08       2     159 ..     114     294 ..     113     296 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 3.3e-11
                  TSHHHHHHHHTTT.S--.-.............-EESS--SSSEEEEESS-------B--SS--TTE...................EEEE---S.EEEE CS
  ATP-grasp_3   2 sdKlktykkLkeagvkv.P.........tkleaeeleeeekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefieG.kplS 76 
                   dK+    ++k+agv++ P           ++ +++++  +++++K + G+gg ++rvv+ + e+ ++i +++             + +++e  +++ 
   CTQ30247.1 114 GDKVSAITAMKKAGVPTvPgsdgpltddMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKaeakaafnndmvYMEKYLENpRHIE 211
                  69***********99853799999997666777788888***************************999999899********9878899996489** PP

                  EEEEE.SSSEEEEEEEEEEEET....TEEEEEEES----H.HHHHHHHHHHHHTTSTT--EEEEEEEEESS.SEEEEEEESS-- CS
  ATP-grasp_3  77 vsllsdgekvlvlavnrqliekaekefvyaGnvtpietel.keevvelaeevvekleglaGyvGvDlvlkdeepyviEvNPRlt 159
                  +++l+dg+ + +    r    +++++ v     +p  t + ++ + e + +++ ++ g +G    +++ +++e y+iE N R++
   CTQ30247.1 212 IQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPElRRYIGERCAKACVDI-GYRGAGTFEFLFENGEFYFIEMNTRIQ 294
                  *******999988888888777777788888888877766599999**********.*************************98 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   5.2e-11   1.2e-07      26     174 ..     143     291 ..     123     293 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 5.2e-11
                      HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHH......HHHTT-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS- CS
  Dala_Dala_lig_C  26 ellekveeelgypvfVKpareGSSvGvskveseeelkeaie......eafkydekvlvEeai.egreievavlgneklevsevgeivvkkgfyd 112
                      +  ++  +++gypv++K++  G   G+  v+s +el++ i+      +a+  +  v +E+++ + r ie+ vl +++ ++  + e+  +    +
       CTQ30247.1 143 DANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISmtkaeaKAAFNNDMVYMEKYLeNPRHIEIQVLADGQGNAIYLAERDCSM--QR 234
                      445677899***************************988752222223444556799*****899*************999999987764..34 PP

                      HHHHHC.TT-EEESS-.---HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEES CS
  Dala_Dala_lig_C 113 yeakysddkaqlevpa.klekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNt 174
                       ++k +      e pa  +++e ++ i e   ka   ++ rG +   f+ + +ge+++ E+Nt
       CTQ30247.1 235 RHQKVV-----EEAPApGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE-NGEFYFIEMNT 291
                      555554.....3344427999**************************9987.9*********9 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   4.5e-11     1e-07      15     159 ..     140     292 ..     124     295 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 4.5e-11
                 CCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-.EEE--EEEEEEET.. CS
   ATP-grasp  15 eskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGe.tafypvvetvqed.. 102
                 ++ ++ ++ a+++g+pv++K + +g  G+G  vvrs+++l q ++++        ++  v++E++ +  + + + v  + +G+ ++  +    +q++  
  CTQ30247.1 140 DDMDANRAHAKRIGYPVIIK-ASGGGGGRGMRVVRSDAELAQSISMTkaeakaafNNDMVYMEKYLENPRHIEIQVLADGQGNaIYLAERDCSMQRRhq 237
                 55667788899*********.89999****************99998899999999999***********99999999****73333333334444400 PP

                 TEEEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS CS
   ATP-grasp 103 gilrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapR 159
                 +++++  ap  ++ +  + + e ++k++  +g+ G  ++E+   e+ge ++ E+  R
  CTQ30247.1 238 KVVEEAPAPG-ITPELRRYIGERCAKACVDIGYRGAGTFEFLF-ENGEFYFIEMNTR 292
                 4444444444.77789999*********************655.4899999998877 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.7e-06     0.011       8     105 ..     121     221 ..     114     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.7e-06
                 HHHHHTT--B-...-EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S.EEEEEEEEECT CS
      GARS_A   8 dllkkagipta...eyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG.eEvsllalvdg 102
                 + +kkag+pt    +   ++d+++ ++  ++ + ++ ++Ka+g  +g+g+ v++s +e  + ++    + k    ++ v +E++le    + +++l dg
  CTQ30247.1 121 TAMKKAGVPTVpgsDGPLTDDMDANRAHAKRIGYPV-IIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFNNDMVYMEKYLENpRHIEIQVLADG 218
                 56888887764322667788999999**********.*********************9999988777777777789999*****96346777777777 PP

                 TEE CS
      GARS_A 103 ktv 105
                 +  
  CTQ30247.1 219 QGN 221
                 654 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.1   9.2e+03     111     132 ..      11      32 ..       4      34 .. 0.71
   2 ?   11.4   0.0   7.9e-05      0.18       1      56 [.     152     204 ..     152     225 .. 0.82
   3 ?   -1.3   0.0      0.65   1.4e+03     129     146 ..     206     223 ..     202     233 .. 0.79
   4 ?   -3.7   0.0       3.6   8.2e+03     139     150 ..     280     291 ..     258     294 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.1
  ATP-grasp_4 111 ealeellkevnallglknfpvH 132
                   +++  + ++ ++lg+k ++vH
   CTQ30247.1  11 GEIALRILRACKELGIKTVAVH 32 
                  5566666677789999999999 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 7.9e-05
  ATP-grasp_4   1 islPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesfl 56 
                  i +Pv+iK s g + +G++++++++e+ + ++ +++e   ak+ +++++v  e++l
   CTQ30247.1 152 IGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAE---AKAAFNNDMVYMEKYL 204
                  579**************************99999977...5666666666555544 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.65
  ATP-grasp_4 129 fpvHiElrvsedgkiipi 146
                   p HiE++v +dg+   i
   CTQ30247.1 206 NPRHIEIQVLADGQGNAI 223
                  589******999875554 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 3.6
  ATP-grasp_4 139 edgkiipiEvnp 150
                  e+g+ + iE+n 
   CTQ30247.1 280 ENGEFYFIEMNT 291
                  568899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3247.04
//
Query:       CTQ30248.1  [L=80]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-29   99.2   3.8    1.1e-28   99.0   3.8    1.0  1  DUF997    Protein of unknown function (DUF997)
  ------ inclusion threshold ------
        2.4    8.6   8.3        5.3    7.5   8.3    1.5  1  DUF4212   Domain of unknown function (DUF4212)


Domain annotation for each model (and alignments):
>> DUF997  Protein of unknown function (DUF997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   3.8   1.2e-32   1.1e-28       1      75 [.       7      77 ..       7      78 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 1.2e-32
      DUF997  1 qankEalltllltllyflwwllfaYglgskeveeyyilglPlWfflscillpilfivlvillvkfvFkdipLdde 75
                qa+kEa+++l+ltlly+++wl++aY++g      ++++glP+Wf+++c+l+p+lfi+l++++vk++F+di+L+d+
  CTQ30248.1  7 QAHKEARWALWLTLLYLAAWLAAAYLPGV----AIGFTGLPHWFEMACLLVPLLFILLCWAMVKLIFRDISLEDD 77
                9***************************4....45**************************************97 PP

>> DUF4212  Domain of unknown function (DUF4212)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   8.3   0.00059       5.3       7      65 ..      14      64 ..       8      70 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00059
     DUF4212  7 enlrlililLviWfvvsfglgillaeelntirtflgfplgFwfaaqgsilvfvvlifvY 65
                  l+l+l++L++W++++++      + + +i  f+g+p  F +a    +l f++l+++ 
  CTQ30248.1 14 WALWLTLLYLAAWLAAAYL------PGV-AI-GFTGLPHWFEMACLLVPLLFILLCWAM 64
                5678888999999999998......333.67.599***9999**************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 622.19
//
Query:       CTQ30249.1  [L=484]
Description: pantothenate:sodium symporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.6e-136  453.6  29.2   7.3e-136  453.2  29.2    1.1  1  SSF       Sodium:solute symporter family


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.2  29.2  4.1e-140  7.3e-136       1     406 []      37     433 ..      37     433 .. 1.00

  Alignments for each domain:
  == domain 1  score: 453.2 bits;  conditional E-value: 4.1e-140
         SSF   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGlavvllelgalllvlllllllaerlr....nagalTlpdylskRfkgkrilvylsalslll 95 
                 yfl++rs++gfvl+++l+a++isa+sf+G++Ga++++Gl++vll++++l++++l+l++l+++++    +++a+Tl+d+l++R++++  lv+l++lsll+
  CTQ30249.1  37 YFLGSRSMGGFVLAMTLTATYISASSFIGGPGAAYKYGLGWVLLAMIQLPAIWLSLGVLGKKFAilarRYNAVTLNDMLFARYQSRL-LVWLASLSLLV 134
                 9**************************************************************999*9****************998.*********** PP

         SSF  96 vitlklsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivllevGgleslveklkeaapkvvdlltpds 194
                 +++ +++v+++gga+l+e+a G+ y t++l++++++alYt+ GG++A+v++dt+q+++ml+g+++ll++v++++Gg+ ++ve+l+++++   +l+ p++
  CTQ30249.1 135 AFVGAMTVQFIGGARLLETAAGIPYDTGLLIFGVSIALYTAYGGFRASVLNDTMQGMVMLIGTIVLLVGVIHAAGGVGHAVETLQSIDV---KLVSPQG 230
                 *****************************************************************************************...99***** PP

         SSF 195 lkllrdpltalslwlglvlGvaglphilvRflaakdakailkgvlkltivlilvligmisiilfaiklagavpkavgtevgvsniaypeLvvkllpnll 293
                 ++++++p++++s+w+++++Gv+glph++vR++++kd+ka+++g++++tiv++++++g        ++laga+++av+++++v+++++p+L+vk+lp++ 
  CTQ30249.1 231 AEDILSPTFMASFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIGTIVVAILMFG--------MHLAGALGRAVIPDLTVPDLVIPTLMVKVLPPFA 321
                 ********************************************************9........9********************************* PP

         SSF 294 aGlllavmlAaimstltslllsassaftkDlYkkirrkasakekelvgvsriivlvvislaillavqeeqkgvlklvelafaglasavlavillalfwk 392
                 aG++la+++Aaimst++++ll++s++++kDlY + r++++ +ek+l+++s+ i+l +++l++l+a+ ++++ +++l+ laf+gl++++l+ ++l+l+w+
  CTQ30249.1 322 AGIFLAAPMAAIMSTINAQLLQSSATIIKDLYLNWRPDQATNEKRLKRMSAGITLLLGVLLLLAAWRPPEM-IIWLNLLAFGGLEAVFLWPLVLGLYWE 419
                 ***********************************************************************.*************************** PP

         SSF 393 rvneqGAlagliiG 406
                 r+n+ GAl+++i+G
  CTQ30249.1 420 RANAAGALSAMIVG 433
                 *************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3378.78
//
Query:       CTQ30250.1  [L=293]
Description: methylase for 50S ribosomal subunit protein L11 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-105  352.9   0.0   1.6e-105  352.7   0.0    1.0  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    1.6e-10   41.0   0.0    2.2e-10   40.5   0.0    1.3  1  Methyltransf_31  Methyltransferase domain
    4.1e-10   39.5   0.0    6.1e-10   38.9   0.0    1.2  1  MTS              Methyltransferase small domain
    9.8e-09   35.8   0.0    2.4e-08   34.6   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    2.3e-06   27.5   0.0    4.1e-06   26.7   0.0    1.4  1  Methyltransf_23  Methyltransferase domain
    3.6e-06   27.6   0.0    7.3e-06   26.7   0.0    1.5  1  Methyltransf_12  Methyltransferase domain
    5.7e-06   26.9   0.0    1.7e-05   25.3   0.0    1.8  1  Methyltransf_11  Methyltransferase domain
    2.9e-05   23.8   0.0    7.4e-05   22.5   0.0    1.6  2  Cons_hypoth95    Conserved hypothetical protein 95
    3.1e-05   23.9   0.0    4.9e-05   23.3   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
    0.00014   21.7   0.0    0.00018   21.3   0.0    1.2  1  N6_N4_Mtase      DNA methylase
    0.00017   21.4   0.0    0.00027   20.8   0.0    1.2  1  Met_10           Met-10+ like-protein
    0.00021   21.3   0.0    0.00031   20.7   0.0    1.2  1  Methyltransf_32  Methyltransferase domain
     0.0011   18.8   0.0     0.0016   18.2   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0025   17.5   0.7      0.011   15.4   0.6    1.9  1  UPF0020          Putative RNA methylase family UPF0020
      0.004   16.1   0.0      0.006   15.5   0.0    1.2  1  Methyltransf_9   Protein of unknown function (DUF1698)
     0.0064   15.8   0.0     0.0093   15.3   0.0    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
  ------ inclusion threshold ------
       0.02   14.5   0.0      0.028   14.0   0.0    1.2  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
       0.11   11.9   0.0       0.24   10.7   0.0    1.5  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family


Domain annotation for each model (and alignments):
>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.7   0.0  1.7e-108  1.6e-105       2     295 ..       3     292 ..       2     293 .] 0.99

  Alignments for each domain:
  == domain 1  score: 352.7 bits;  conditional E-value: 1.7e-108
        PrmA   2 wlelsvttkkeaeeavsniLeelgakgvaiedsklleeedifepaleeeelkeevkvkalfkeeteakeliaqlkeselglekgkvkveeveeedWaee 100
                 w++l+++t+ +++e++s++L+e+g+ +++++d++   ++++fep ++e++l+ +++v +lf++et++k ++aql+++ l  + +++k+e++e++dW++e
  CTQ30250.1   3 WIQLKLNTTGANAEDLSDALMEAGSVSITFQDTH---DTPVFEPLPGETRLWGDTDVIGLFDAETDMKAVVAQLEQHPLLGAGFAHKIEQLEDKDWERE 98 
                 **********************************...************************************************************** PP

        PrmA 101 wkkyykPvrigerltivpsweeypeeeeelvieldpGlAFGTGtHpTTklclealeklvkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkv 199
                 w+++++P+r+gerl+i+psw+++p+ e++++++ldpGlAFGTGtHpTT+lcl++l+ l  +g++v+D+G+GSGiLaiaa+kLga+k++++DiD++A+++
  CTQ30250.1  99 WMDNFHPMRFGERLWICPSWRDVPD-ENAVNVMLDPGLAFGTGTHPTTSLCLQWLDGLDLNGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQA 196
                 ************************9.99*********************************************************************** PP

        PrmA 200 akeNaelNkveaklevalseellkeekadvivaNILaevlielaedikklvkeggllilSGilkekaeevaealeqgfeleevlereeWvaivakk 295
                 +++Na++N+v+++le++l+++++++ kadv+vaNILa +l ela+ i+ l  +ggll lSGil+++ae+v+ea+++ f l+ v+e+eeW++i+++k
  CTQ30250.1 197 SRDNAQRNGVSERLELYLPQDQPESMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADLFALDPVVEKEEWCRITGRK 292
                 ********************************************************************************************9987 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   2.3e-13   2.2e-10       4      81 ..     159     230 ..     156     281 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 2.3e-13
  Methyltransf_31   4 glrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieelekl.ledekfDlilsn 81 
                      g++v+D GCG+G l++++  +lg  a+ +GiDi+++ai+ +r naq++g++ ++e+        +++  e  k D++++n
       CTQ30250.1 159 GKTVIDFGCGSGILAIAAL-KLG-AAKAIGIDIDPQAIQASRDNAQRNGVSeRLELYL------PQDqPESMKADVVVAN 230
                      789*************999.877.599**********************985554443......2221122446666665 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   6.1e-13   6.1e-10      18     104 ..     143     230 ..     127     237 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 6.1e-13
                 HHHHHHHHHCHCC..TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTSTTS-EEEEEE- CS
         MTS  18 kGsklLletlpke..lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeveekkfdlivsN 104
                   ++l l+ l+      ++v+D+GcG G+l++a++k     +   +d+d +A+++++ n+++n+++ ++      ++ e +k d++v N
  CTQ30250.1 143 PTTSLCLQWLDGLdlNGKTVIDFGCGSGILAIAALKLGAA-KAIGIDIDPQAIQASRDNAQRNGVSERLELYLPQDQPESMKADVVVAN 230
                 5678888888887767778**************9997776.67789*******************977777777777888899999998 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   2.4e-11   2.4e-08       1      70 [.     162     229 ..     162     240 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 2.4e-11
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvs 70 
                      v+d+GcG+G l++a++k  g+ak +g+Di++++++a r +a+++g++ +++    +d p e+ + D+vv+
       CTQ30250.1 162 VIDFGCGSGILAIAALKL-GAAKAIGIDIDPQAIQASRDNAQRNGVSERLELYLPQDQP-ESMKADVVVA 229
                      89**************99.69***********************997666666666766.4558888887 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   4.1e-09   4.1e-06      22      89 ..     158     230 ..     134     246 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 4.1e-09
  Methyltransf_23  22 aggrvLdiGcGtGillevlrengf.svtgvDlspeaveiaekakkaqkdqfdeq......eaaepqgkfdlIvlr 89 
                       g+ v+d+GcG+Gil+  + + g+ + +g+D++p+a++  +  ++aq   + e       ++++++ k d++v++
       CTQ30250.1 158 NGKTVIDFGCGSGILAIAALKLGAaKAIGIDIDPQAIQASR--DNAQRNGVSERlelylpQDQPESMKADVVVAN 230
                      5789*************99999988**********999864..33333333223334444555556699999987 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   7.3e-09   7.3e-06       2      73 ..     164     230 ..     163     244 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 7.3e-09
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvas 73 
                      ++GcG+G l+ a l+    ++ +g+Di+p+ai +a++  a+r+    +++el   +  d++++ + D+vva+
       CTQ30250.1 164 DFGCGSGILAIAALKL-GAAKAIGIDIDPQAI-QASRDNAQRN-GVSERLELYLPQ--DQPESMKADVVVAN 230
                      9*********999999.999999*********.4444444444.344555555444..566667*****997 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.8e-08   1.7e-05       2      53 ..     164     211 ..     163     239 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.8e-08
                      EET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECC CS
  Methyltransf_11   2 dvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadae 53 
                      d+GcG+G+la a  k g a+ +g+D++++++++++++a+++g+      +++e
       CTQ30250.1 164 DFGCGSGILAIAALKLGaAKAIGIDIDPQAIQASRDNAQRNGV-----SERLE 211
                      99**************************************995.....44443 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.1   3.1e+03     126     155 ..      63      92 ..      60     107 .. 0.69
   2 !   22.5   0.0   7.4e-08   7.4e-05      36      96 ..     152     213 ..     139     228 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.1
                    TCH.HHHHHHHHHTT-EEEEEEEEEEEECC CS
  Cons_hypoth95 126 ellieevlelleekkllkenalvvveteke 155
                    e  +++v+++le++ ll  +    +e+ ++
     CTQ30250.1  63 ETDMKAVVAQLEQHPLLGAGFAHKIEQLED 92 
                    444688999999999998877777776555 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 7.4e-08
                    HCCC.HCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEE CS
  Cons_hypoth95  36 laae.iegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetael 96 
                    l+   ++g++v+D  +GsG l++ Al  ga+ka+ ++ d++a+++ ++n ++ +++e+ + +
     CTQ30250.1 152 LDGLdLNGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAQRNGVSERLELY 213
                    55445999*******************************************99988876665 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     5e-08   4.9e-05      14      72 ..     158     215 ..     149     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 5e-08
  Methyltransf_18  14 kgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrls 72 
                      +g++v+D G+  g+l+i+++k g a k+i +Di +++++++++n++++g+++++e++l 
       CTQ30250.1 158 NGKTVIDFGCGSGILAIAALKLGAA-KAIGIDIDPQAIQASRDNAQRNGVSERLELYLP 215
                      5789****************98876.9***************************99885 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.8e-07   0.00018     190     229 ..     157     197 ..      84     199 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.8e-07
                  -TT-EEEETT-TTTHHHHHHHHTT-.EEEEEESSHHHHHHH CS
  N6_N4_Mtase 190 kkgdivlDpFaGSGtTavaakelgr.kfiGieieeeyvela 229
                   +g++v+D+ +GSG  a+aa++lg  k+iGi+i++++++++
   CTQ30250.1 157 LNGKTVIDFGCGSGILAIAALKLGAaKAIGIDIDPQAIQAS 197
                  5799*******************9636*********99976 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.7e-07   0.00027     100     157 ..     158     214 ..     155     237 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.7e-07
                 TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEE CS
      Met_10 100 egevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpil 157
                 +g++V+d   G G +ai++ k++ ak  ++id++P++++  ++n ++N v+++++ +l
  CTQ30250.1 158 NGKTVIDFGCGSGILAIAALKLGAAK-AIGIDIDPQAIQASRDNAQRNGVSERLELYL 214
                 5899*****************99888.789*********************9998765 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.2e-07   0.00031      26      82 ..     159     210 ..     146     229 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.2e-07
  Methyltransf_32  26 altvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrl 82 
                       +tv+D+G+G g L+ +          k +gid+  + ++++++ a++ g  +++rl
       CTQ30250.1 159 GKTVIDFGCGSGILAIAALK---LGAAKAIGIDIDPQAIQASRDNAQRNG--VSERL 210
                      589************98887...6799********************998..65555 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.6e-06    0.0016      62     124 ..     145     207 ..     134     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.6e-06
                 HHHHHHHTT.--.TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC CS
        PCMT  62 valalelle.lk.kgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle 124
                  +l+l++l+ l+ +g+ v++ G+GsG+l+    +l  +k  +++i+  ++ +++++ n ++++++
  CTQ30250.1 145 TSLCLQWLDgLDlNGKTVIDFGCGSGILAIAALKLGAAK--AIGIDIDPQAIQASRDNAQRNGVS 207
                 5789****998747899**********987666654444..6****************9999876 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.6   1.1e-05     0.011      76     128 ..     181     230 ..     156     231 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
                 H--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE- CS
     UPF0020  76 elklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtn 128
                  +k +g+D+d++++q++r+Na++ gv+++ e++  + +  + ++ + dv+v+n
  CTQ30250.1 181 AAKAIGIDIDPQAIQASRDNAQRNGVSERLELYLPQDQ--P-ESMKADVVVAN 230
                 45679***********************9999875555..4.44467777777 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.1e-06     0.006     113     148 ..     156     191 ..     151     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.1e-06
                     --TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---H CS
  Methyltransf_9 113 dlkgrtildvGcgnGyhlwrmvgegaklvvGidPse 148
                     dl+g+t++d Gcg+G      +  ga+ ++Gid   
      CTQ30250.1 156 DLNGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDP 191
                     89****************************987433 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.3e-06    0.0093      58     119 ..     155     215 ..     148     230 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9.3e-06
                 TT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES CS
        CMAS  58 lelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevkll 119
                 l+l +G+t++d GcG G l++ a +   +k +g+ +  +  + ++++ ++ +++++ e++l 
  CTQ30250.1 155 LDL-NGKTVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAQRNGVSERLELYLP 215
                 555.59********************99************************9999998775 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.8e-05     0.028       2      53 ..     160     212 ..     159     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
  Methyltransf_15   2 rvilDlfsGaGGnviq.falvfekviaieinleklacaqhNaevYgvsdkitl 53 
                      ++++D  +G+G  +i+ ++l   k i+i+i+++ ++ +  Na+  gvs+++ l
       CTQ30250.1 160 KTVIDFGCGSGILAIAaLKLGAAKAIGIDIDPQAIQASRDNAQRNGVSERLEL 212
                      5799*******9988625666899*************************9976 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       7.1   7.1e+03     190     208 ..     113     131 ..     110     134 .. 0.82
   2 ?   10.7   0.0   0.00024      0.24      46      99 ..     157     209 ..     152     223 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 7.1
                      HHHHHHHHS--HHHHHHHH CS
  Ubie_methyltran 190 yLvesirafPdqetlkeli 208
                      ++  s r+ Pd++ ++ ++
       CTQ30250.1 113 WICPSWRDVPDENAVNVML 131
                      7888999999999988887 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00024
                      --TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.T CS
  Ubie_methyltran  46 krgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.n 99 
                      ++g++v+D  +G+g la++ ++      k +++Di+++ ++ +++ ++++g++ +
       CTQ30250.1 157 LNGKTVIDFGCGSGILAIAALKLGA--AKAIGIDIDPQAIQASRDNAQRNGVSeR 209
                      7899************999887654..57899******************99744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2182.17
//
Query:       CTQ30251.1  [L=321]
Description: tRNA-dihydrouridine synthase B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.9e-116  387.9   0.0   3.2e-116  387.8   0.0    1.0  1  Dus           Dihydrouridine synthase (Dus)
      1e-05   25.1   0.2     0.0012   18.4   0.1    1.8  2  His_biosynth  Histidine biosynthesis protein
    2.5e-05   23.6   0.0      0.004   16.4   0.0    2.1  2  DHO_dh        Dihydroorotate dehydrogenase
     0.0043   16.5   0.0     0.0087   15.5   0.0    1.5  1  PEP_mutase    Phosphoenolpyruvate phosphomutase
  ------ inclusion threshold ------
      0.019   14.1   0.0      0.048   12.9   0.0    1.7  1  NanE          Putative N-acetylmannosamine-6-phosphate epimer
      0.024   13.8   0.0      0.034   13.3   0.0    1.2  1  DUF561        Protein of unknown function (DUF561)
      0.076   12.4   0.7       0.18   11.2   0.1    1.8  2  NMO           Nitronate monooxygenase
      0.088   12.1   0.0        7.1    5.8   0.0    2.5  2  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.8   0.0  1.4e-119  3.2e-116       2     307 ..      14     318 ..      12     321 .] 0.98

  Alignments for each domain:
  == domain 1  score: 387.8 bits;  conditional E-value: 1.4e-119
                 E---TTTS-HHHHHHHHHTT-SSEEEEEEEE-SSS---HHHHHHH-GGGGGTSCEEEEEE-S-HHHHHHHHHHHHHTT-SCEEEEESSTTEEETTEEEG CS
         Dus   2 laPmagvtdlpfRelvrefgataLvvtemvtakaivreekvrirmlseeeeetplavQlggsdpallaeaAklvadlgadeIdlNvGCPskkvtrggaG 100
                  aPmag+td+pfR+l+ e+ga+ L+v+em++++ +v+e++++++++ + +e+  ++vQ++gs p+++a+aA++++++ga++Id+N+GCP+kkv+r+ aG
  CTQ30251.1  14 AAPMAGITDRPFRTLCYEMGAG-LTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSVPEEMAAAARINVESGAQIIDINMGCPAKKVNRKLAG 111
                 57********************.**************************************************************************** PP

                 GGGGGSHHHHHHHHHHHHCCSSS-EEEEEESESSTTTC.HHHHHHHHHHCT-SEEEEESSECCCTT-CG--CHHHHHHHHH-SS-EEEESS--SHHHHH CS
         Dus 101 aaLlrkpdlvaqivkavvkaveiPvtvkirigiddeeenalelakiveaaGaqaltvHgRtraqnyegtadweaIkevkqavsipviaNGdIkdaedaq 199
                 +aLl+ pd v++i++avv+av++Pvt+kir+g++ e++n++e+a+ +e++G+qalt+HgRtra+ ++g a++++I++vkq+vsip+iaNGdI+d+ +a+
  CTQ30251.1 112 SALLQYPDQVKSILTAVVNAVDVPVTLKIRTGWEPEHRNCVEIAQLAEECGIQALTIHGRTRACLFNGDAEYDSIRAVKQKVSIPIIANGDITDPLKAR 210
                 *************************************************************************************************** PP

                 HHHHHH--SEEEESCHHCCSTTHHHH.HHHHHHSC------HHHHHHHHHHHHHHCHHTTCCCCCCHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHCC CS
         Dus 200 aileetGadgvmigrgalgnPwlfae.stavktgeaepapplaeeaeiveehlkkleeelgedkglrkirkhlawylkglkkaaelrreleevsdkeea 297
                 a+l++tGad++migr+a+g+Pw+f+e +++++tge  p  plae+++++++h+++l++++g++kg+r +rkh++wyl++++ ++++rr++++++d +e+
  CTQ30251.1 211 AVLDYTGADALMIGRAAQGRPWIFREiQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGQAKGYRIARKHVSWYLQEHAPDDQFRRTFNAIEDASEQ 309
                 *************************************************************************************************** PP

                 HHCHH.HHCC CS
         Dus 298 lenleeaalk 307
                 le le a+++
  CTQ30251.1 310 LEALE-AYFE 318
                 *9997.5554 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   5.2e-07    0.0012      74     222 ..      83     226 ..      66     228 .. 0.83
   2 !   12.2   0.0     4e-05     0.089      59     117 ..     180     239 ..     173     245 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 5.2e-07
                   SEEEEESSSSSHHHHHHHHHCT-SEEEESHHHHH-THHHHHHHHHHCGGGEEEEEEEEECEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETT CS
  His_biosynth  74 ipvqvGGGIrsledveelleagadkviigtaavknpelikelaekfgsqkivvaiDarrgykvaikgwreetgldavelakkleelgageilltdid 170
                   + + v +G + ++         +++   g+a ++ p+ +k++++     ++v a+D+     + i+++ e ++ + ve+a+ +ee g++++ ++   
    CTQ30251.1  83 ARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDQVKSILT-----AVVNAVDVPVT--LKIRTGWEPEHRNCVEIAQLAEECGIQALTIHGRT 172
                   455555565555533555566799999****************9.....47779998865..7788888888************************* PP

                   TTTTSS---H.HHHHHHHHHHSSEEEEESS--SHHHHHHHH.HTTCSEEEESHH CS
  His_biosynth 171 rdGtlsGpdl.eltkelaeavkipviasGGvgsledlkelk.segvdavivgsa 222
                   r    +G    + +++++++v+ip+ia G ++++   +++   +g+da+++g+a
    CTQ30251.1 173 RACLFNGDAEyDSIRAVKQKVSIPIIANGDITDPLKARAVLdYTGADALMIGRA 226
                   *******765499********************999999995667799999997 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 4e-05
                   HHHHHHHHHHHHH-SSEEEEESSSSSHHHHHHHHH.CT-SEEEESHHHHH-THHHHHHHH CS
  His_biosynth  59 eanldlveeiaeevfipvqvGGGIrsledveelle.agadkviigtaavknpelikelae 117
                   +a++d ++++ ++v+ip+   G I +  +++++l+  gad ++ig aa  +p +++e+ +
    CTQ30251.1 180 DAEYDSIRAVKQKVSIPIIANGDITDPLKARAVLDyTGADALMIGRAAQGRPWIFREIQH 239
                   678899****************************9668***********99999998876 PP

>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.8e-06     0.004     117     196 ..      81     169 ..      40     177 .. 0.74
   2 !    5.3   0.0    0.0044       9.8     233     291 ..     185     241 ..     180     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.8e-06
                 HHHHHG..GGESEEEEES-SC....TCC..TSCCCGCHHHHHHHHHHHHHHHHSSEEEEEE-SSSSHH..HHHHHHHHHHHHTECEEEE. CS
      DHO_dh 117 vvrkig..pfadilelNvSsP....ntp..glrdlqekeelkaillkvvkevskvpvlvKlaPdltde..ekkdiadvllelkldgiivt 196
                  +++i+    a+i+ +N+ +P    n +  g + lq+ +++k+il++vv++v+ vpv  K+      e  +  +ia+++ e++++++ + 
  CTQ30251.1  81 AAARINveSGAQIIDINMGCPakkvNRKlaGSALLQYPDQVKSILTAVVNAVD-VPVTLKIRTGWEPEhrNCVEIAQLAEECGIQALTIH 169
                 33444434899**********444433333556678999999*******9999.*******86555441155688999999999988765 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0044
                 HHHHHHHHTTT.S-EEEESS--SHHHHHHHHH.HTECEEEESHHHHHHGTCHHHHHHHHH CS
      DHO_dh 233 virelykrlkkeipiIgvGGiesgeDalekie.aGAslvqvytalvfegpkiakkikkel 291
                  ir+++++++  ipiI+ G i+    a   +   GA ++ ++ a     p+i+++i++ l
  CTQ30251.1 185 SIRAVKQKVS--IPIIANGDITDPLKARAVLDyTGADALMIGRAA-QGRPWIFREIQHYL 241
                 6999999999..*********987777666643799999999998.67789998888765 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.9e-06    0.0087      55     132 ..     119     192 ..     114     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.9e-06
  PEP_mutase  55 eellaavraiaevvslPlivDledGygespeevaetvrrliaaGvvgvniEDkkkndaerqll.dieefaekiaaaraa 132
                 +++ +++ a++++v++P+++ +++G++ + +++ e  + +++ G+ +++i  +     +r +l + +   + i+a++++
  CTQ30251.1 119 DQVKSILTAVVNAVDVPVTLKIRTGWEPEHRNCVEIAQLAEECGIQALTIHGR-----TRACLfNGDAEYDSIRAVKQK 192
                 677789999*****************************************998.....334444777777777777665 PP

>> NanE  Putative N-acetylmannosamine-6-phosphate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.1e-05     0.048     119     176 ..     167     227 ..     147     239 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.1e-05
                 TTTTSSTTS-..SS--HHHHHHHHHT.T--EEEES---SHHHHHHHHT.T--SEEEE-HHH CS
        NanE 119 tlsGytkeeek.aepDfalvkalsea.glkviaeGrintPekakkaie.iGvdavvvGsai 176
                 t+ G t       + +++ ++a++++  + +ia+G i  P ka+ +++ +G+da+++G a 
  CTQ30251.1 167 TIHGRTRACLFnGDAEYDSIRAVKQKvSIPIIANGDITDPLKARAVLDyTGADALMIGRAA 227
                 777777776554678889999987642788****************9946********874 PP

>> DUF561  Protein of unknown function (DUF561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.5e-05     0.034      78     197 ..      87     205 ..      70     228 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
      DUF561  78 vkaGadlveiGnfdsl.YeqgrklsseeilalvkevrkLlPktdlsvtiPyiLkleeqvkLakkLeslgvdliqteGkitsiskakkvndliekslstl 175
                 v +Ga++++i n  +   + +rkl  + +l   ++v+++l  +  +v +P  Lk+    +  ++ + +++  +  e +i++++ +   +  + +    +
  CTQ30251.1  87 VESGAQIIDI-NMGCPaKKVNRKLAGSALLQYPDQVKSILTAVVNAVDVPVTLKIRTGWEP-EHRNCVEIAQLAEECGIQALTIHGRTRACLFNGDAEY 183
                 789******9.77775156699**********************************99985.6678999999999********999999999999999* PP

      DUF561 176 astyeiskkvslPvicasGlsd 197
                  s+ ++ +kvs+P+i+   ++d
  CTQ30251.1 184 DSIRAVKQKVSIPIIANGDITD 205
                 ****************988876 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.72   1.6e+03     183     196 ..     123     136 ..     109     143 .. 0.78
   2 ?   11.2   0.1   7.9e-05      0.18     184     223 ..     185     225 ..     148     227 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.72
         NMO 183 aLvpqvldavdiPv 196
                 +++  v++avd+Pv
  CTQ30251.1 123 SILTAVVNAVDVPV 136
                 56778888999988 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 7.9e-05
         NMO 184 LvpqvldavdiPviAaGGiidrrgvaaaLal.GAsgvqigt 223
                  +  v++ v+iP+iA G i d     a+L + GA +  ig 
  CTQ30251.1 185 SIRAVKQKVSIPIIANGDITDPLKARAVLDYtGADALMIGR 225
                 467788999********************865999999985 PP

>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.016        36       7      25 ..       2      20 ..       1      55 [. 0.90
   2 ?    5.8   0.0    0.0032       7.1     282     336 ..     184     238 ..     165     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.016
                  EETTEEESSSEEE----S- CS
  Oxidored_FMN  7 kignmtLknRivmapmtrl 25
                   ig+ +L+nR++ apm  +
    CTQ30251.1  2 RIGHHQLRNRLIAAPMAGI 20
                  79**************876 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0032
                   HHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHH CS
  Oxidored_FMN 282 kntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklk 336
                        vk+ ++ p+i+ g i+d+ ka  ++    ad   +gR+    p + + ++
    CTQ30251.1 184 DSIRAVKQKVSIPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 238
                   456789***********************99999999999998766666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2466.36
//
Query:       CTQ30252.1  [L=98]
Description: global DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-14   52.7   0.4    3.8e-14   52.2   0.4    1.3  1  HTH_8          Bacterial regulatory protein, Fis family
    0.00053   19.8   0.1     0.0011   18.8   0.1    1.5  1  Phage_NinH     Phage NinH protein
  ------ inclusion threshold ------
      0.025   14.8   0.3      0.029   14.6   0.3    1.1  1  DUF3333        Domain of unknown function (DUF3333)
        0.1   12.4   0.1       0.26   11.1   0.0    1.7  2  HTH_30         PucR C-terminal helix-turn-helix domain
       0.14   12.1   0.1       0.17   11.9   0.1    1.1  1  Inhibitor_I24  PinA peptidase inhibitor


Domain annotation for each model (and alignments):
>> HTH_8  Bacterial regulatory protein, Fis family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.4   1.1e-17   3.8e-14       2      42 .]      55      95 ..      54      95 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 1.1e-17
                HHHHHHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHHT CS
       HTH_8  2 leevEkelIeaALertgGnkskAArlLGisRrtLyrKLkkY 42
                l+evE+ l+  +++ t+Gn+++AA + Gi+R tL++KLkkY
  CTQ30252.1 55 LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKY 95
                79**************************************9 PP

>> Phage_NinH  Phage NinH protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   3.2e-07    0.0011      13      38 ..      68      93 ..      60      96 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.2e-07
  Phage_NinH 13 vetyGnqtEvARrlkcsRatvRkYvr 38
                  t+Gnqt +A  +  +R+t+Rk ++
  CTQ30252.1 68 QYTRGNQTRAALMMGINRGTLRKKLK 93
                359*******************9765 PP

>> DUF3333  Domain of unknown function (DUF3333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.3   8.1e-06     0.029      67     119 ..      17      68 ..       3      82 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.1e-06
     DUF3333  67 eeskklatanyeklirdalkaklpeveerrekrelaelissgaayqlrdrvla 119
                 ++++++++  ++  +++alk+ + +++  ++ ++l+el+  +++  l d+v++
  CTQ30252.1  17 NSQDQVTQKPLRDSVKQALKNYFAQLN-GQDVNDLYELVLAEVEQPLLDMVMQ 68 
                 45679999****************655.99*********************97 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.94   3.4e+03      44      56 ..      44      56 ..      39      56 .. 0.68
   2 ?   11.1   0.0   7.3e-05      0.26      11      35 ..      70      94 ..      62      96 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.94
                TTSHHHHHHHHHH CS
      HTH_30 44 lddpddrlaLylA 56
                 +d +d+++L lA
  CTQ30252.1 44 GQDVNDLYELVLA 56
                4677788888776 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7.3e-05
                TTT-HHHHHHHHTS-HHHHHHHHHH CS
      HTH_30 11 nggnisatAkaLhvHrnTlryRLrr 35
                + gn +++A  +++ r Tlr+ L++
  CTQ30252.1 70 TRGNQTRAALMMGINRGTLRKKLKK 94
                469********************98 PP

>> Inhibitor_I24  PinA peptidase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   4.6e-05      0.17      84     125 ..      15      56 ..       3      68 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.6e-05
  Inhibitor_I24  84 vvertnqvvqkpkadfqgerisyalaklaaqenndgyegnlm 125
                     v+  +qv qkp  d   + +   +a+l  q+ nd ye  l 
     CTQ30252.1  15 TVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLA 56 
                    578899*******************************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1061  (0.0591779); expected 358.6 (0.02)
Passed bias filter:                      717  (0.0399911); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 741.21
//
Query:       CTQ30253.1  [L=217]
Description: DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-36  125.5   0.1      3e-36  124.2   0.1    1.6  2  TetR_C_2  MAATS-type transcriptional repressor, C-terminal re
    5.4e-17   61.3   0.1    8.5e-17   60.7   0.1    1.3  1  TetR_N    Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> TetR_C_2  MAATS-type transcriptional repressor, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.34     3e+03       7      15 ..      27      35 ..       4      74 .. 0.57
   2 !  124.2   0.1   3.4e-40     3e-36       1     117 [.      84     199 ..      84     202 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.34
    TetR_C_2  7 relliyvLq 15
                r + +  L+
  CTQ30253.1 27 RGVTNTTLT 35
                333333333 PP

  == domain 2  score: 124.2 bits;  conditional E-value: 3.4e-40
    TetR_C_2   1 dPlqvlrelliyvLqsivedprqralleilfhKCEFvgemsavleirkelllaeysrleevlqeciekgllpanldlrraaiilraslsGllenwLfap 99 
                 +Pl+ lre +i+ L++i+++prqral++il+++CEF  +m++++eir++++++ ys +  +lq c+++++lpa+ ++++++i+l++++sGl++nwL+ p
  CTQ30253.1  84 EPLNALRERFIAGLRYIAANPRQRALMQILYQRCEFSSDMLSEYEIRQRIGFN-YSLIGGILQCCVRNNILPAETNIEMILIVLHSAFSGLIKNWLLDP 181
                 6**************************************************97.6******************************************** PP

    TetR_C_2 100 esfdlkkeaealvdavld 117
                 + fdl+++a+alvd+++ 
  CTQ30253.1 182 QRFDLYQQAPALVDNIMA 199
                 ***************986 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.1   9.5e-21   8.5e-17       1      47 []      16      62 ..      16      62 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 9.5e-21
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLleal 47
                +++ A + fa rG  +tt+ +IA++AGv++ga+Y++F+sK eL++++
  CTQ30253.1 16 LIESAIQQFALRGVTNTTLTDIADAAGVTRGAVYWHFASKTELFNEM 62
                6899****************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1771.45
//
Query:       CTQ30254.1  [L=379]
Description: cytoplasmic membrane lipoprotein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-15   56.7   0.7    8.7e-15   54.5   0.7    2.1  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
      1e-13   51.0   0.0    1.6e-13   50.3   0.0    1.5  1  HlyD             HlyD membrane-fusion protein of T1SS
    2.6e-12   46.4   0.3    3.6e-08   33.1   0.1    2.8  2  Biotin_lipoyl_2  Biotin-lipoyl like
    3.2e-11   43.8   4.8    2.2e-07   31.5   0.1    3.4  3  HlyD_3           HlyD family secretion protein


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.7   1.9e-18   8.7e-15      17     214 .]      61     287 ..      47     287 .. 0.73

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 1.9e-18
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......................XXXXXXXXXXXXXXXX CS
    HlyD_D23  17 rrlarvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalkakkklkkke......................lleaarerLrllgvse 93 
                  r+a+v ++v+G + k +   +g+ V++Gq L++++       q+++ +a+ ++ k++++                       ++++a +  r+ + + 
  CTQ30254.1  61 FRVAEVRPQVSGIILKRNFV-EGSDVEAGQSLYQIDPAT---YQAAWNSAKGDEAKAEAAAaiahltvkryvpllgtkyisqqEYDQAVATARQADADV 155
                 5899***********99999.9************96543...344444444433333333344556667777777777777665555555555544444 PP

                 XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX......X..XXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  94 eqi.aelektgkvqktvtvkapisGvVteknvreGqyvqpgdt..lftiadlstVWveaevyeqqlalvkv......g..qkvevtvealpgktfeGkv 181
                  +  a++e  +    +++v++pisG + + +v+eG  v++g++  l+t+++l+ ++v++    +++ ++k+      g  ++ve+ +e+ +   ++G +
  CTQ30254.1 156 IATkAAVETARINLAYTKVTSPISGRIGKSSVTEGALVTNGQSdaLATVQQLDPIYVDVTESSNDFMRLKQeslqrgGdtKSVELVMENGQAYPLKGSL 254
                 333055666666668899********************9987555***********998877777766665222222322356666666666789**** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 182 dyiyptvdpetRtvkvRieldNpdgkLkpgmfA 214
                 ++ + tvd++t ++++R+ ++Np++ L pgmf+
  CTQ30254.1 255 QFSDVTVDESTGSITLRAIFPNPQHVLLPGMFV 287
                 ********************************7 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   3.6e-17   1.6e-13      12      79 ..     151     354 ..      36     355 .. 0.79

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 3.6e-17
                 E.................................................................................................. CS
                 x.................................................................................................. RF
        HlyD  12 a.................................................................................................. 12 
                 a                                                                                                  
  CTQ30254.1 151 Adadviatkaavetarinlaytkvtspisgrigkssvtegalvtngqsdalatvqqldpiyvdvtessndfmrlkqeslqrggdtksvelvmengqayp 249
                 155555555555555666666666666666667777777777777777777777777777777777777777777777777777777777777788888 PP

                 ......................................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSBEEEEEEEEEEEETTEEEESSSS- CS
                 ......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  13 ......................................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispdrvpvrvvvekaqgpyyplriglk 73 
                                                       + ++d+++ +q+++v+++++++t +g+++++ v+  +++++++vv+ +a+g+++ +++glk
  CTQ30254.1 250 lkgslqfsdvtvdestgsitlraifpnpqhvllpgmfvRARIDEGVDPQAILVPQQGVTRTPRGDASVMLVNDKNQVETREVVATQAVGDKWLITSGLK 348
                 8888888888888888888888888888888888888899*********************************************************** PP

                 TTEEEE CS
                 xxxxxx RF
        HlyD  74 agalvr 79 
                 +g++v+
  CTQ30254.1 349 PGDKVI 354
                 ****97 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.1   7.9e-12   3.6e-08       2      47 ..      63     108 ..      62     118 .. 0.92
   2 !   10.3   0.0    0.0001      0.47       3      28 ..     172     197 ..     163     204 .. 0.94

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 7.9e-12
  Biotin_lipoyl_2   2 vvsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaea 47 
                      v ++ ++vsG + + n  +G  V+aG+ L+++D+  +q+a + a++
       CTQ30254.1  63 VAEVRPQVSGIILKRNFVEGSDVEAGQSLYQIDPATYQAAWNSAKG 108
                      6789*************************************99876 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0001
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGd 28 
                      +++++p+sGr+ +  V++G  V  G+
       CTQ30254.1 172 TKVTSPISGRIGKSSVTEGALVTNGQ 197
                      589*********************98 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00022      0.99       2      33 ..      66      99 ..      65     130 .. 0.81
   2 !   31.5   0.1   4.9e-11   2.2e-07       1     106 []     173     284 ..     173     284 .. 0.94
   3 ?    2.7   0.4     0.044     2e+02      27      80 ..     317     378 ..     286     379 .] 0.63

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00022
      HlyD_3  2 lrApvdGvvvelnveegevvqagdelleiip..p 33
                +r  v+G++ + n  eg+ v+ag+ l +i p   
  CTQ30254.1 66 VRPQVSGIILKRNFVEGSDVEAGQSLYQIDPatY 99
                7889*************************98430 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 4.9e-11
      HlyD_3   1 tlrApvdGvvvelnveegevvqagde..lleiippdtllveakvpaadlgsik.......kkgqkvtlkldqgsdytlkgkierisptvdaktgaykve 90 
                 ++++p++G++ + +v+eg  v++g+   l+++   d + v+++ ++ d  ++k       +   +v+l  ++g+ y+lkg ++  + tvd++tg ++++
  CTQ30254.1 173 KVTSPISGRIGKSSVTEGALVTNGQSdaLATVQQLDPIYVDVTESSNDFMRLKqeslqrgGDTKSVELVMENGQAYPLKGSLQFSDVTVDESTGSITLR 271
                 589*******************998888**************************99998888889999999**************************** PP

      HlyD_3  91 vslenpekksiplkpG 106
                 + ++np   +  l+pG
  CTQ30254.1 272 AIFPNP---QHVLLPG 284
                 ******...7777776 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.044
      HlyD_3  27 lleiip.....pdtllveakvpaadlgsik..kkgqkvtlkld..qgsdytlkgkierisptv 80 
                 ++ + +     ++++ ++ +v +++l +    k+g+kv +       ++ t+k+++er +p v
  CTQ30254.1 317 VMLVNDknqveTREVVATQAVGDKWLIT-SglKPGDKVIVSGLqkVRPGVTVKAEVERAAPAV 378
                 5555553322233444444444444444.15789******9996547777*******999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2728.71
//
Query:       CTQ30255.1  [L=1036]
Description: multidrug efflux system protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1431.4  21.1          0 1431.2  21.1    1.0  1  ACR_tran   AcrB/AcrD/AcrF family
    2.3e-08   33.4  29.2    5.5e-07   28.8  10.0    2.5  2  MMPL       MMPL family
    3.3e-07   29.9  27.2    0.00061   19.2   3.1    2.5  2  SecD_SecF  Protein export membrane protein
  ------ inclusion threshold ------
      0.048   13.7   0.2      0.048   13.7   0.2    2.9  2  DUF3561    Protein of unknown function (DUF3561)


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1431.2  21.1         0         0       1    1021 []       1    1028 [.       1    1028 [. 1.00

  Alignments for each domain:
  == domain 1  score: 1431.2 bits;  conditional E-value: 0
                  -HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEE.TTSEEEEEEEESTT CS
    ACR_tran    1 iikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqS.seglssitltFedg 96  
                  ++kffi+rp+fa+vla+i++++G l+il+lP++++P+iapp+v +s++ypGa++++v+++vtq++Eq++ng+d+l+y+sS+S s+g+++itltF++g
  CTQ30255.1    1 MSKFFIHRPVFAWVLAIIMMIAGGLAILQLPIAQYPTIAPPAVAISATYPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSdSAGSVTITLTFKSG 97  
                  89*********************************************************************************************** PP

                  S-HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHH CS
    ACR_tran   97 tdidiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkl 193 
                  td+diA++qvqn+lq a++ LP+evq++gis++k+sss +lv+++ s++ ++t+ +++d++++n+kd++sr++GVgdvql+G +++a+r+wld + l
  CTQ30255.1   98 TDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSFLLVAGFISDNPTTTQDDISDYVASNVKDPISRLNGVGDVQLFG-AQYAMRVWLDGNLL 193 
                  **********************************************************************************.************** PP

                  HCTT--HHHHHHHHHHHSSB-EEEEE......TT-SB-EEEEESB---SHHHHHTSEEE.ETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEE CS
    ACR_tran  194 aklgltltdvvsalkeqnvnvaaGql......egqeeelliraqgqlqsaediekiivk.nqdgskvrlrDvAkVelgaeeerlaatfngkpavlle 283 
                  +k++lt+ dv++al++qn+++aaGql      +gq+ +++i+aq++l+ +++++k++++ n+dgs v+l+DvA++elg e+++++a++ngkpa++l+
  CTQ30255.1  194 NKYNLTPVDVINALQVQNDQIAAGQLggtpalKGQQLNASIIAQTRLKDPQEFGKVTLRvNADGSVVHLKDVARIELGGENYNVVARINGKPASGLG 290 
                  ************************************************************************************************* PP

                  EEEETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ACR_tran  284 vkklpganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalg 380 
                  +k ++gana+++a+a+k+kl+eL++++P+g+++v++yd+t+fv+ si+eVvktL+eai+Lv+lv++lFLqn+ratlip+iavP++llgtfavl+++g
  CTQ30255.1  291 IKLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFG 387 
                  ************************************************************************************************* PP

                  --BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  381 fslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlv 477 
                  +s+N+lt+fg+vlAiGl+vDdAiVvvEn+er++ ee+++p+ea++ksm++iqgalv+ia+vl+avf+P++f+gG++G+++rqf++tiv+a++lsvlv
  CTQ30255.1  388 YSINTLTMFGMVLAIGLLVDDAIVVVENVERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLV 484 
                  ************************************************************************************************* PP

                  HHCCHHHHHHHHS---STT-CT..SHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB- CS
    ACR_tran  478 altltPalcallLkerkeekek..kffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgvs 572 
                  al+ltPalca+lLk+ ++e+++  +ff +fn  f+++ ++Y+++++ +lr + ++l+++l+++v++++lf+r+p++flP+ed+gv++t++qlp+g++
  CTQ30255.1  485 ALVLTPALCATLLKPASAEHHEkkGFFGWFNARFDQSVNHYTNSVSGILRGTGRYLVIYLLIVVGMAVLFMRLPTSFLPDEDQGVFLTMIQLPSGAT 581 
                  ****************99999889************************************************************************* PP

                  HHHHHHHHHHHHH.HHH.TTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSSS CS
    ACR_tran  573 leqtqkvlkqvek.ilk.ekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletls 667 
                  +e+tqkvl++v++ +l+ ek++vesvf+v+Gf++sg  +g+ns+++f+sLkp++ r+++e+sve +i+r++ ++++i++a+v++++++++ el+t++
  CTQ30255.1  582 QERTQKVLDTVTDyYLHnEKANVESVFTVNGFSFSG--QGQNSGMAFVSLKPWEARSGDENSVESIIKRATVAFSQIKDAMVFPFNMPAIIELGTAT 676 
                  *************888899*****************..*********************************************************** PP

                  CEEEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTT.EEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEE CS
    ACR_tran  668 gvrselqvklfgddleaLseaaeqllaalkelpe.lsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvr 763 
                  g+++el + + g ++ aL++a++qll ++k++p+ l +vr+++ ed+pq+++++d+eka++lGvs+sdin+t+++algg yvndfi++gr++kv+v+
  CTQ30255.1  677 GFDFELID-QGGLGHTALTQARNQLLGMVKQHPDqLVRVRPNGLEDTPQFKLDVDQEKAQALGVSLSDINETISAALGGYYVNDFIDRGRVKKVYVQ 772 
                  ********.************************989************************************************************* PP

                  E-GGGSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHHH CS
    ACR_tran  764 leedlrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqeqea 860 
                  +++++r+ p+d+++++vr+++g+mvp+sa++++++ +g++++er+ng +s++i+g++ +g+s++ea++ +e +a+k  lp+g++++wtg+++qe+++
  CTQ30255.1  773 ADAHFRMLPSDINNMYVRSANGEMVPFSAFVTSRWIYGSPRLERYNGLPSMEILGEASPGKSTGEAMALMETLASK--LPSGIGYDWTGMSYQERLS 867 
                  ****************************************************************************..******************* PP

                  HCHHHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHH CS
    ACR_tran  861 snsllilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaile 957 
                  +n++++l+a++l++vfl+Laalyes+s+p++++l+vPl+++Galla++lrgl+++v++qvGl+++iGl++kNail+vefak+l+ekegk + ea+le
  CTQ30255.1  868 GNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGIIEATLE 964 
                  ************************************************************************************************* PP

                  HHHHCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  958 aakeRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlva 1021
                  a+++RLrPiLMT+la+ilGv+PL++s+gaGs++q+++g++v+gG++t+t+L++++vPv++v+v+
  CTQ30255.1  965 ASRMRLRPILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATLLAIFFVPVFFVVVR 1028
                  *************************************************************985 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8  10.0   1.2e-10   5.5e-07     106     319 ..     302     513 ..     291     525 .. 0.77
   2 !    9.7  11.2   8.1e-05      0.37     143     305 ..     869    1030 ..     832    1035 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.2e-10
        MMPL 106 svaairaaveearpleglkvevtGpaatladlrdasdrdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvl 204
                 +++ai+a ++e++p  +   +v+  +  ++++ ++s +++ ++ + +++++++++ + ++++ a l+p + v v ll ++++      l++++ s  +l
  CTQ30255.1 302 TATAIKAKLAELQPYFPQGMKVV-YPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAV------LSMFGYSINTL 393
                 55566666666663333333333.3445667788888999999999***************************999999998......44455554444 PP

        MMPL 205 .gllvvlliavGtDYallLvsRy.reelaagedreeaviravastgkvvtaaGltvaiamlgLvv...arlpvlaqvGvaialGvlvdvlivlTllPAl 298
                  ++ +vl+i+  +D a+ +v    r  +++  + +ea  + + ++ ++ ++ ++++ + ++ +++   ++  + +q+ ++i  +++++vl++l l+PAl
  CTQ30255.1 394 tMFGMVLAIGLLVDDAIVVVENVeRVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFfggSTGAIYRQFSITIVSAMALSVLVALVLTPAL 492
                 056999**************9983445677788999**********************99999994435667899************************ PP

        MMPL 299 lvllGraalakprrkrkkrwW 319
                 +++l + a a+ + k   + W
  CTQ30255.1 493 CATLLKPASAEHHEKKGFFGW 513
                 **9877744444444444666 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 8.1e-05
        MMPL  143 rdlklievvtlvvilviLlivyrSlvaallplltvvvsllaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreel.aagedree 238 
                  +++  + +++l+v+++ L+ +y S  +++ ++l+v ++++ al       l    +   f +gll+ +  + ++  a+l+v   ++ + ++g+   e
  CTQ30255.1  869 NQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLA---ATLRGLNNDVYFQVGLLTTI--GLSAKNAILIVEFAKDLMeKEGKGIIE 960 
                  566678899***************************999988766...22333334445666676665..5566789**999999876246777788 PP

        MMPL  239 aviravastgkvvtaaGltvaiamlgLvvar...lpvlaqvGvaialGvlvdvlivlTllPAllvllGra 305 
                  a  +a +   + +++  l +++ ++ Lv++     ++ ++vG+ +  G+l ++l+++ ++P + v++ r+
  CTQ30255.1  961 ATLEASRMRLRPILMTSLAFILGVMPLVISHgagSGAQNAVGTGVMGGMLTATLLAIFFVPVFFVVVRRR 1030
                  ****************************964322788999*********************999998776 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8  16.3   1.6e-06     0.007      33     185 ..     340     495 ..     333     498 .. 0.78
   2 !   19.2   3.1   1.4e-07   0.00061      35     181 ..     873    1022 ..     852    1030 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH..HHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHH CS
   SecD_SecF  33 avlallialvliliyvalrFewrvalaaiialvhDvii..tvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlsln 129
                 +v  l+ a++l+ + v+  F +++    i +++  v++  t +vls++g  ++  t+ ++   iG  v+d +vv + v+  + + ++ + ke++++s++
  CTQ30255.1 340 VVKTLFEAIILV-FLVMYLFLQNMRATLIPTIAVPVVLlgTFAVLSMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMVE-EKLSPKEATEKSMS 436
                 444455555554.455555666666666666666665534899***********************************887666.78899********* PP

                 HHHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHHHHHHH CS
   SecD_SecF 130 qtLtrtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifiaspllll 185
                 q     +   +++  v v + ++gg    + ++f+++++ ++++ ++ ++ +  +l ++
  CTQ30255.1 437 QIQGALVGIAMVLSAVFVPMAFFGGstgAIYRQFSITIVSAMALSVLVALVLTPALCAT 495
                 *988777777777788899****9977678899*****999999999888887777666 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.4e-07
                  HHHHHHHHHHHHHHHHHT-.HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHH CS
   SecD_SecF   35 lallialvliliyvalrFe.wrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlslnq 130 
                     +i+l+++++ +a  +e w++++++++ +   vi ++ +  l g++ d+ + ++lLt iG S ++ +++ +  ++ ++k + + + e++ ++  +
  CTQ30255.1  873 ALYAISLIVVFLCLAALYEsWSIPFSVMLVVPLGVIGALLAATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEK-EGKGIIEATLEASRM 968 
                  44467888999999999976999***9999******************************************998888777.667777888889999 PP

                  HHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTTHHHHHHH CS
   SecD_SecF  131 tLtrtiltslttllvvvallllgg...dslkdfalallvGlivgtyssifiasp 181 
                   L   ++tsl  +l v+ l++  g   ++ + + + ++ G+++ t+ +if+   
  CTQ30255.1  969 RLRPILMTSLAFILGVMPLVISHGagsGAQNAVGTGVMGGMLTATLLAIFFVPV 1022
                  9**9*******9999999999755444667777777888888888888887655 PP

>> DUF3561  Protein of unknown function (DUF3561)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.5   6.5         4   1.8e+04      59     102 ..     356     400 ..     338     405 .. 0.67
   2 ?   13.7   0.2   1.1e-05     0.048       3      79 ..     415     492 ..     413     502 .. 0.74

  Alignments for each domain:
  == domain 1  score: -6.5 bits;  conditional E-value: 4
     DUF3561  59 PfflallPvsvlvGvalsvllrgkl.lysilatllavvllfwllf 102
                  +fl  +  +++  +a+ v+l g + ++s++   +   ++f++++
  CTQ30255.1 356 YLFLQNMRATLIPTIAVPVVLLGTFaVLSMFGYSINTLTMFGMVL 400
                 367777777777778777665555426677777788888888775 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.1e-05
     DUF3561   3 natnltlskadka.eeedeptyslsGavvGfvsyllalaiPfllyGsntlffllytWPfflallPvsvlvGvalsvll 79 
                 n++++++ +  +  e+++++ ++++Ga+vG ++ l a+ +P+  +G +t           ++ + +svlv ++l+  l
  CTQ30255.1 415 NVERVMVEEKLSPkEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALVLTPAL 492
                 55566565555553777888899**********************999975444444455677899999998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1036 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1105  (0.061632); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.44
# Mc/sec: 7042.81
//
Query:       CTQ30256.1  [L=73]
Description: conserved hypothetical protein; putative outer membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0054   17.1   3.1     0.0054   17.1   3.1    2.8  3  LPAM_1           Prokaryotic membrane lipoprotein lipid attac
  ------ inclusion threshold ------
      0.017   15.7   0.0      0.017   15.7   0.0    1.0  1  FlaE             Flagellar basal body protein FlaE
        2.5    8.1   5.3        9.5    6.3   0.9    2.2  2  Gram_pos_anchor  LPXTG cell wall anchor motif


Domain annotation for each model (and alignments):
>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   3.1   9.1e-07    0.0054       1      18 []       1      18 [.       1      18 [. 0.97
   2 ?   -1.0   1.7      0.54   3.2e+03       8      16 ..      55      63 ..      51      63 .. 0.82
   3 ?   -0.2   0.4       0.3   1.8e+03       7      13 ..      65      71 ..      64      72 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 9.1e-07
      LPAM_1  1 MKKillalgalllLsGCs 18
                MKK+l++++++ lL+GC+
  CTQ30256.1  1 MKKYLIVALLASLLAGCA 18
                *****************6 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.54
      LPAM_1  8 lgalllLsG 16
                +g +++++G
  CTQ30256.1 55 AGGAAAVAG 63
                788899988 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.3
      LPAM_1  7 algalll 13
                +lg+++l
  CTQ30256.1 65 TLGIVAL 71
                6777764 PP

>> FlaE  Flagellar basal body protein FlaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.0   2.8e-06     0.017      13      46 ..      24      56 ..      18      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.8e-06
        FlaE 13 vtvYDslGnsheltlyFvktgtpntWevyvtvDg 46
                v vYDs+G     ++ ++ t+ + +We+  ++ g
  CTQ30256.1 24 VPVYDSQGRLVHTNTCMKGTT-EDNWETAGAIAG 56
                89*******************.89***9988655 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2    0.0067        40      18      32 ..       2      16 ..       1      16 [. 0.84
   2 ?    6.3   0.9    0.0016       9.5      21      35 ..      53      67 ..      46      73 .] 0.77

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0067
                     XXXXXXXXXXXXXXX CS
  Gram_pos_anchor 18 ifltaaGllallggl 32
                     + +++++lla l+++
       CTQ30256.1  2 KKYLIVALLASLLAG 16
                     67999**99999986 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0016
                     XXXXXXXXXXXXXXX CS
  Gram_pos_anchor 21 taaGllallggllLl 35
                      +aG +a+++gl L+
       CTQ30256.1 53 AIAGGAAAVAGLTLG 67
                     688888888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 649.60
//
Query:       CTQ30257.1  [L=184]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-18   63.2  10.8    3.7e-09   35.9   1.7    4.2  4  Hexapep    Bacterial transferase hexapeptide (six repeats)
    5.3e-07   29.3  12.3     0.0013   18.4   6.6    4.1  4  Hexapep_2  Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   1.2e-07     0.001       4      35 ..      15      46 ..      12      47 .. 0.88
   2 !    4.1   0.0    0.0048        43      20      34 ..      52      66 ..      49      67 .. 0.84
   3 !    8.8   0.1   0.00015       1.4      17      35 ..      78      96 ..      77      97 .. 0.77
   4 !   35.9   1.7   4.2e-13   3.7e-09       1      34 [.      97     130 ..      97     132 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.2e-07
                EETTEEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  4 IGsnvlIgpfaviggnVkIGdnvkIgagvvig 35
                IG  v+I++ +v+ g+V I d+v +++ v i+
  CTQ30257.1 15 IGLRVMIDASSVVIGDVRIADDVSVWPLVAIR 46
                66689**********************88776 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0048
                EEE-TTEEEETTEEE CS
     Hexapep 20 VkIGdnvkIgagvvi 34
                V IG ++ I  g+v+
  CTQ30257.1 52 VSIGQRSNIQDGSVL 66
                889999999999997 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00015
                ETTEEE-TTEEEETTEEEE CS
     Hexapep 17 ggnVkIGdnvkIgagvvig 35
                g++ +IG++v++g+ v ++
  CTQ30257.1 78 GNPLIIGEDVTVGHKVMLH 96
                6777899999999888776 PP

  == domain 4  score: 35.9 bits;  conditional E-value: 4.2e-13
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34 
                 +++IG+ vl+g++++++++V++Gd+v Igag+ +
  CTQ30257.1  97 GCTIGNRVLVGMGSILLDGVVVGDDVMIGAGSLV 130
                 699****************************988 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0045        40       4      26 ..      15      39 ..      14      41 .. 0.82
   2 ?    1.4   0.0      0.03   2.7e+02       2      26 ..      52      60 ..      51      67 .. 0.55
   3 !   17.0   1.7   4.1e-07    0.0036       1      32 [.      80     112 ..      80     113 .. 0.95
   4 !   18.4   6.6   1.5e-07    0.0013       3      31 ..      99     129 ..      97     131 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0045
                E-TT-EE-TT-E.ES.EEE-TT-EE CS
   Hexapep_2  4 IGdnCliGanag.iG.vslGdncvv 26
                IG +++i a+++ iG v + d++ v
  CTQ30257.1 15 IGLRVMIDASSVvIGdVRIADDVSV 39
                8889999999996666999999865 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.03
                EEE-TT-EE-TT-EESEEE-TT-EE CS
   Hexapep_2  2 viIGdnCliGanagiGvslGdncvv 26
                v+IG++++                +
  CTQ30257.1 52 VSIGQRSN----------------I 60
                55555555................4 PP

  == domain 3  score: 17.0 bits;  conditional E-value: 4.1e-07
                 .EEE-TT-EE-TT-EE.SEEE-TT-EE-TT-EE CS
   Hexapep_2   1 pviIGdnCliGanagi.GvslGdncvvgaGvvi 32 
                 p+iIG+++ +G      G ++G+++ vg+G+++
  CTQ30257.1  80 PLIIGEDVTVGHKVMLhGCTIGNRVLVGMGSIL 112
                 89*************88*************986 PP

  == domain 4  score: 18.4 bits;  conditional E-value: 1.5e-07
                 EE-TT-EE-TT-EE..SEEE-TT-EE-TT-E CS
   Hexapep_2   3 iIGdnCliGanagi..GvslGdncvvgaGvv 31 
                 +IG+++l+G  ++   Gv +Gd++ +gaG+ 
  CTQ30257.1  99 TIGNRVLVGMGSILldGVVVGDDVMIGAGSL 129
                 7************77**************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1405.46
//
Query:       CTQ30258.1  [L=85]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-31  108.7   0.1    1.2e-31  108.5   0.1    1.0  1  DUF1488   Protein of unknown function (DUF1488)


Domain annotation for each model (and alignments):
>> DUF1488  Protein of unknown function (DUF1488)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.1   6.6e-36   1.2e-31       1      82 []       5      84 ..       5      84 .. 0.99

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 6.6e-36
                EEE----EEETTTTEEEEEEEETTEEEEEEEEHHHH....HTS---HHHHHHHHHHTHHHHHHHHHHHHHTT---TTS-EEE CS
     DUF1488  1 IlFpdrrsydaarqaVrFpalvdgreveCavsaeaLedhfgaeslreedllaaFeahRfdieeaaerlieaeggdedgtilL 82
                I+Fpdr+s+da+rq V Fpalv+g++++Ca+s + L+++fgae+  ++++laaF++hR+d+ee+ae+li++++ d++g+i+L
  CTQ30258.1  5 IQFPDRESWDAERQGVVFPALVNGMQLTCAISGQILQQRFGAEG--PAQWLAAFQEHRWDLEEEAEALIRDGQEDAQGWIWL 84
                9******************************************9..9*********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      229  (0.0127726); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 651.88
//
Query:       CTQ30259.1  [L=272]
Description: dehydroshikimate reductase, NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-24   86.4   0.0    1.9e-24   85.7   0.0    1.4  1  Shikimate_dh_N  Shikimate dehydrogenase substrate binding dom
    4.5e-09   36.5   0.0    7.6e-09   35.7   0.0    1.2  1  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
      6e-07   29.1   0.8      1e-06   28.4   0.8    1.4  1  SDH_C           Shikimate 5'-dehydrogenase C-terminal domain


Domain annotation for each model (and alignments):
>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.0   3.2e-28   1.9e-24       1      83 []       6      88 ..       6      88 .. 0.99

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 3.2e-28
                    EEESS-TT-SHHHHHHHHHHHCTSSEEEEEEE-SCCTHHHHHHHHHHTTESEEEE-TTSCCHHHGGSSEE-HHHHHHT--SEE CS
  Shikimate_dh_N  1 viGnpikhSlSPaihnaafkalglngsyeafeveedelekaveelralglaGlnvTiPfKeaviplldelseeAkaigAvNti 83
                    v+Gnpi+hS+SPaih+ ++++lg+++ y  +  + d++ + ++++ a+g +G+nvT+PfKe++++ +del+e+A+ +gAvNt+
      CTQ30259.1  6 VFGNPIAHSKSPAIHQLFARQLGITHPYGRVLAPLDDFVSSLNQFFAEGGKGANVTVPFKEEAFARADELTERAALAGAVNTL 88
                    89********************************************************************************7 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.3e-12   7.6e-09      12      85 ..     119     190 ..     113     192 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.3e-12
                   T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH.T.ET-EEEEGCGHHHHHHT-SEEEE-SSS CS
  Shikimate_DH  12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeel.kgeeiealkleelkellaeadvvisatas 85 
                   ++++ll+GaG  ++ v+  Ll+ g+  v+++NRt++ra+ela+ + ++ +++a++++ l+   a +d+++ at+s
    CTQ30259.1 119 RQRILLVGAGGASRGVLLPLLSLGCA-VTIVNRTYSRARELATLFaHTGSVSAREMDTLS--GATFDLIVNATSS 190
                   589**********************9.*****************9544456777777777..4689******997 PP

>> SDH_C  Shikimate 5'-dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.8   1.7e-10     1e-06       1      31 []     237     267 ..     237     267 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.7e-10
                 HHHHHHHHHHHHHHHHHS----HHHHHHHHH CS
       SDH_C   1 GLgMLveQgaeqFelWTGrepPvevMreall 31 
                 GLgMLv Q+a +  lW+G+ p ++++ e+l+
  CTQ30259.1 237 GLGMLVAQAAHAVLLWHGVLPAIAPVIETLQ 267
                 9********************9999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2131.04
//
Query:       CTQ30260.1  [L=190]
Description: putative ribosome maturation factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-43  148.7   0.0    1.3e-43  148.5   0.0    1.0  1  Sua5_yciO_yrdC  Telomere recombination


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   0.0   7.5e-48   1.3e-43       2     179 .]      16     190 .]      15     190 .] 0.96

  Alignments for each domain:
  == domain 1  score: 148.5 bits;  conditional E-value: 7.5e-48
                     HHHTTSEEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-.TC--HHHHHHHHCT-SSSCEEEEE..E-TS-HHHHT CS
  Sua5_yciO_yrdC   2 alrkGgivaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklae.seveeealkllerfwPGpitlllkrskeklpkevap 95 
                     +l++++++a+pte v+g +cd+++e av rl e+K+rp +k l++++as+e+lk +++ s++++ + +++ ++wPGp+t++ +++ e  p+++++
      CTQ30260.1  16 VLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASFEQLKPYIDdSRLSDSQREAIFSCWPGPVTFVFPARPE-TPRWLTG 109
                     6999*******************************************************************************8555.******* PP

                     TTTEEEEEE-SSHHHHHHHHHCTS-EEEEES-STTS-S-SSHHHHHHHC-TTSECB-SS---SSS---EEEETTSSTSSECEXX CS
  Sua5_yciO_yrdC  96 glktvGvrlPdtplarlLlealgeplvaTSanlsgepsitdaeeveeelgeivdlildggeiavgvdstVvdltegkpkilRrG 179
                     + ++++vr+ ++pl+ +L+ea g+plv+TSanl g+p++ + +ev  ++g+++  ++dg    ++ +s + d++    +++R+G
      CTQ30260.1 110 RFDSLAVRVTNHPLVIELCEAYGKPLVSTSANLTGQPPCRTTAEVHAQFGDSF-PVVDGATGGRQNPSEIRDALT--GELFRQG 190
                     ****************************************************9.69999999999******9985..5677766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       258  (0.0143901); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1480.38
//
Query:       CTQ30261.1  [L=180]
Description: putative DNA topoisomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-54  180.2  21.8    1.7e-17   62.9   0.6    4.2  4  zf-C4_Topoisom   Topoisomerase DNA binding C4 zinc finger
    4.9e-06   25.7  14.9       0.21   11.0   0.1    5.4  5  zf-ribbon_3      zinc-ribbon domain
    0.00015   21.8  17.2       0.19   11.9   0.5    4.6  4  Zn-ribbon_8      Zinc ribbon domain
    0.00022   20.8  17.3       0.56   10.0   0.3    5.6  5  zinc_ribbon_2    zinc-ribbon domain
    0.00058   20.0  12.2        1.2    9.3   0.6    4.5  4  Auto_anti-p27    Sjogren's syndrome/scleroderma autoantigen 1
      0.003   17.5  18.2    2.5e+03   -1.4  18.6    4.2  1  DZR              Double zinc ribbon
     0.0094   15.4  11.9       0.55    9.8   0.1    4.3  4  TF_Zn_Ribbon     TFIIB zinc-binding
     0.0098   15.9  22.4       0.51   10.4   0.1    5.7  4  Ogr_Delta        Ogr/Delta-like zinc finger
  ------ inclusion threshold ------
      0.029   15.0  10.4        5.4    7.8   0.2    4.4  4  zf-ISL3          zinc-finger of transposase IS204/IS1001/IS10
      0.039   14.0   0.0        4.7    7.3   0.0    2.6  2  Toprim_C_rpt     Topoisomerase C-terminal repeat
      0.055   13.6  10.7        5.9    7.1   0.4    4.3  4  zf-Mss51         Zinc-finger of mitochondrial splicing suppre
      0.058   13.1  14.9        3.4    7.5   0.8    4.3  4  YacG             DNA gyrase inhibitor YacG
       0.12   12.1   0.3       0.12   12.1   0.3    4.1  4  zf-RRN7          Zinc-finger of RNA-polymerase I-specific TFI
       0.15   11.9  23.1       0.48   10.2   0.7    4.7  4  Zn_Tnp_IS1       InsA N-terminal domain
       0.18   11.8  11.7         20    5.2   0.1    5.0  4  zinc_ribbon_4    zinc-ribbon domain
       0.19   11.3  13.0         17    5.1   0.1    5.4  5  zf_UBZ           Ubiquitin-Binding Zinc Finger
       0.31   11.0   0.1       0.31   11.0   0.1    4.8  5  DUF35_N          Rubredoxin-like zinc ribbon domain (DUF35_N)
       0.36   10.6   8.2       0.72    9.6   0.3    3.9  4  Ribosomal_S27e   Ribosomal protein S27
       0.36   10.9   4.9         24    5.1   0.0    3.4  3  DUF2752          Protein of unknown function (DUF2752)
       0.39   10.8  14.3        3.5    7.7   0.0    4.6  4  ADK_lid          Adenylate kinase, active site lid
       0.44   10.4  14.6       0.58   10.1   0.2    4.5  4  RNA_POL_M_15KD   RNA polymerases M/15 Kd subunit
       0.45   11.0   3.0         36    4.8   0.0    3.8  4  DUF983           Protein of unknown function (DUF983)
       0.49   10.3   0.1       0.49   10.3   0.1    3.0  3  zf-CGNR          CGNR zinc finger
          1    9.4   6.9         21    5.2   0.0    4.2  4  VP_N-CPKC        Virion protein N terminal domain
          1    9.4  15.6         57    3.8   0.1    3.8  3  HypA             Hydrogenase/urease nickel incorporation, met
        1.3    8.6   7.1        3.1    7.3   0.1    3.7  4  Mu-like_Com      Mu-like prophage protein Com
        1.3    9.0  13.1        6.2    6.8   1.7    4.8  5  Zn_ribbon_SprT   SprT-like zinc ribbon domain
        1.5    9.0  15.6        4.1    7.6   0.1    4.6  4  DUF1272          Protein of unknown function (DUF1272)
        1.8    8.6  13.5        9.4    6.3   0.2    4.3  3  PhnA_Zn_Ribbon   PhnA Zinc-Ribbon
        2.5    6.6   7.6       0.11   11.0   1.0    1.8  2  Terminase_GpA    Phage terminase large subunit (GpA)
        2.5    7.5  15.7          7    6.1   0.3    4.4  4  zf-TFIIB         Transcription factor zinc-finger
        3.7    7.4  20.1        2.7    7.8   0.8    4.8  4  PADR1            PADR1 (NUC008) domain
        5.3    7.1  21.4        3.7    7.6   0.4    5.5  5  Nudix_N_2        Nudix N-terminal


Domain annotation for each model (and alignments):
>> zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   1.4   2.7e-19   1.5e-16       2      38 ..      13      49 ..      12      50 .. 0.95
   2 !   62.9   0.6   3.1e-20   1.7e-17       1      38 [.      61      98 ..      61      99 .. 0.94
   3 !   58.6   1.0   7.1e-19   3.9e-16       3      38 ..     105     142 ..     103     143 .. 0.95
   4 !   12.5   0.3   0.00018     0.098       2      22 ..     145     168 ..     144     171 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 2.7e-19
                    EE-SSS--EEEEEE-SSSEEEEESST.T----EEB-G CS
  zf-C4_Topoisom  2 ekCPkCggdLvlkrgkkGkFvGCsnYPeCkftkklkk 38
                    e CP+Cg++Lv+++gk G F+GCs+YP+C+++++lk+
      CTQ30261.1 13 EPCPQCGAELVIRSGKHGPFLGCSHYPDCDYIRPLKS 49
                    56********************************997 PP

  == domain 2  score: 62.9 bits;  conditional E-value: 3.1e-20
                    -EE-SSS--EEEEEE-SSSEEEEESST.T----EEB-G CS
  zf-C4_Topoisom  1 vekCPkCggdLvlkrgkkGkFvGCsnYPeCkftkklkk 38
                    +++CP+Cg+ +vl++g++G+F+GCs+YPeC++t+ ++k
      CTQ30261.1 61 GQECPSCGAVMVLRQGRFGMFIGCSRYPECEHTELIDK 98
                    589******************************98876 PP

  == domain 3  score: 58.6 bits;  conditional E-value: 7.1e-19
                     E-SSS-.-EEEEEE-SSS.EEEEESST.T----EEB-G CS
  zf-C4_Topoisom   3 kCPkCg.gdLvlkrgkkG.kFvGCsnYPeCkftkklkk 38 
                      CP+Cg g+Lv++r+++G +F++C++YP+C+f+ ++k+
      CTQ30261.1 105 ACPQCGqGHLVQRRSRFGkTFHSCDRYPDCQFVINFKP 142
                     6********************************99986 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 0.00018
                     EE-SSS-.-EEEEEE-SSS..EEE CS
  zf-C4_Topoisom   2 ekCPkCg.gdLvlkrgkkG..kFv 22 
                     ++CP+C    L++k++ +G  +F 
      CTQ30261.1 145 GECPECHyPLLIEKKTAQGlrRFC 168
                     79*****9999*******988885 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.2   0.00093      0.51       4      12 ..      14      24 ..      11      28 .. 0.76
   2 !    9.8   0.1   0.00096      0.52       3      11 ..      62      70 ..      60      74 .. 0.81
   3 !   11.0   0.1   0.00039      0.21      15      24 ..     102     111 ..      97     121 .. 0.64
   4 ?    0.8   0.7      0.65   3.5e+02       5       8 ..     147     150 ..     146     154 .. 0.64
   5 ?    0.4   0.0      0.87   4.7e+02       7      12 ..     172     177 ..     171     180 .] 0.70

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00093
  zf-ribbon_3  4 rCPnCGa.p.l 12
                  CP+CGa + +
   CTQ30261.1 14 PCPQCGAeLvI 24
                 6*****98845 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00096
  zf-ribbon_3  3 vrCPnCGap 11
                 ++CP+CGa+
   CTQ30261.1 62 QECPSCGAV 70
                 689999985 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00039
  zf-ribbon_3  15 ddnvCpyCGt 24 
                   +++Cp CG+
   CTQ30261.1 102 TAIACPQCGQ 111
                  5555555553 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.65
  zf-ribbon_3   5 CPnC 8  
                  CP+C
   CTQ30261.1 147 CPEC 150
                  6666 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.87
  zf-ribbon_3   7 nCGapl 12 
                  +CG+p+
   CTQ30261.1 172 QCGKPI 177
                  688865 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0032       1.7      25      36 ..      11      22 ..       3      25 .. 0.72
   2 ?    7.2   0.1      0.01       5.6      27      37 ..      62      73 ..      48      75 .. 0.73
   3 !   11.9   0.5   0.00034      0.19      11      37 ..      90     115 ..      86     118 .. 0.67
   4 ?    3.7   0.9      0.13        69      26      33 ..     144     151 ..     126     155 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0032
  Zn-ribbon_8 25 pltaCPeCgsev 36
                 ++++CP+Cg+e+
   CTQ30261.1 11 KNEPCPQCGAEL 22
                 4566*****965 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.01
  Zn-ribbon_8 27 taCPeCgs.evr 37
                 ++CP+Cg+  v 
   CTQ30261.1 62 QECPSCGAvMVL 73
                 46*****96665 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00034
  Zn-ribbon_8  11 CghefevlqsisdapltaCPeCgs.evr 37 
                  C    e + +  d+  +aCP+Cg+ ++ 
   CTQ30261.1  90 CE-HTELIDK-PDETAIACPQCGQgHLV 115
                  55.4455553.4667788*****98654 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.13
  Zn-ribbon_8  26 ltaCPeCg 33 
                    +CPeC+
   CTQ30261.1 144 AGECPECH 151
                  344****8 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.3     0.001      0.56      15      23 .]      14      22 ..      11      23 .. 0.65
   2 ?    5.5   0.2     0.027        15       2       7 ..      64      69 ..      63      71 .. 0.74
   3 !    7.3   0.2     0.007       3.8      11      21 ..     101     111 ..      99     113 .. 0.79
   4 ?    4.2   0.2     0.067        37      16      23 .]     147     154 ..     141     155 .. 0.70
   5 ?    2.3   0.1      0.27   1.5e+02       4      10 ..     172     178 ..     171     180 .] 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.001
  zinc_ribbon_2 15 FCpyCGtpl 23
                    Cp+CG++l
     CTQ30261.1 14 PCPQCGAEL 22
                   577777665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.027
  zinc_ribbon_2  2 CpnCGa 7 
                   Cp+CGa
     CTQ30261.1 64 CPSCGA 69
                   777775 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.007
  zinc_ribbon_2  11 dnakFCpyCGt 21 
                    ++a  Cp+CG 
     CTQ30261.1 101 ETAIACPQCGQ 111
                    67888999995 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.067
  zinc_ribbon_2  16 CpyCGtpl 23 
                    Cp+C +pl
     CTQ30261.1 147 CPECHYPL 154
                    66666664 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.27
  zinc_ribbon_2   4 nCGaelq 10 
                    +CG++++
     CTQ30261.1 172 QCGKPIP 178
                    7999997 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.055        30      15      25 ..      12      22 ..      11      30 .. 0.81
   2 ?    6.8   0.0     0.014       7.4      15      27 ..      61      73 ..      58      79 .. 0.78
   3 ?    4.3   0.6     0.082        44      19      40 .]      88     110 ..      84     120 .. 0.81
   4 !    9.3   0.6    0.0022       1.2      17      37 ..     146     169 ..     143     174 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.055
  Auto_anti-p27 15 aetCpvCgvPL 25
                   +e Cp+Cg+ L
     CTQ30261.1 12 NEPCPQCGAEL 22
                   799****9766 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.014
  Auto_anti-p27 15 aetCpvCgvPLmr 27
                   ++ Cp Cg++++ 
     CTQ30261.1 61 GQECPSCGAVMVL 73
                   789****998875 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.082
  Auto_anti-p27  19 pvC.gvPLmrdrkggkvyCvaCd 40 
                    p+C  + L  +++++ + C+ C+
     CTQ30261.1  88 PECeHTELIDKPDETAIACPQCG 110
                    56877778887788888999995 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.0022
  Auto_anti-p27  17 tCpvCgvPLmrdr...kggkvyCv 37 
                     Cp+C  PL+ ++   +g + +C+
     CTQ30261.1 146 ECPECHYPLLIEKktaQGLRRFCA 169
                    5*********99978778888997 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4  18.6       4.5   2.5e+03       3      37 ..      89     153 ..       8     174 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4.5
         DZR   3 qCgee.....lppdarfCseCgtk..lkavaa.........................edrCpsCgek 37 
                 +C++       ++ a+ C++Cg+   +++  +                         +  Cp+C+++
  CTQ30261.1  89 ECEHTelidkPDETAIACPQCGQGhlVQR--RsrfgktfhscdrypdcqfvinfkpvAGECPECHYP 153
                 23332555545556667777777643222..235777777777777777777777777777777777 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.062        34      22      37 ..      15      30 ..      14      31 .. 0.64
   2 ?    4.2   0.3     0.055        30      22      29 ..      64      71 ..      63      74 .. 0.83
   3 !    9.8   0.1     0.001      0.55       4      26 ..      88     110 ..      88     115 .. 0.95
   4 ?    2.9   0.2      0.15        80       3       9 ..     147     153 ..     145     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.062
                  ESSSSBEEEECCCCCC CS
  TF_Zn_Ribbon 22 CtdCGlVlednsideg 37
                  C+ CG+ l  +s ++g
    CTQ30261.1 15 CPQCGAELVIRSGKHG 30
                  7777777666666665 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.055
                  ESSSSBEE CS
  TF_Zn_Ribbon 22 CtdCGlVl 29
                  C++CG+V+
    CTQ30261.1 64 CPSCGAVM 71
                  89999885 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.001
                   TTTTCEECHEETSTTCEEESSSS CS
  TF_Zn_Ribbon   4 PnCgstnlveDpergelvCtdCG 26 
                   P+C +t+l+  p+++ + C+ CG
    CTQ30261.1  88 PECEHTELIDKPDETAIACPQCG 110
                   9******9999***********9 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.15
                   ETTTTCE CS
  TF_Zn_Ribbon   3 CPnCgst 9  
                   CP+C+ +
    CTQ30261.1 147 CPECHYP 153
                   ****855 PP

>> Ogr_Delta  Ogr/Delta-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00094      0.51       2      13 ..      15      26 ..      14      28 .. 0.91
   2 !    8.0   1.8    0.0052       2.8       1      13 [.      63      75 ..      63      94 .. 0.84
   3 ?    0.8   4.6      0.88   4.8e+02       2      14 ..     106     118 ..     105     140 .. 0.54
   4 ?    4.2   0.1     0.079        43       1      14 [.     146     159 ..     146     163 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00094
   Ogr_Delta  2 CPhCgapaaart 13
                CP+Cga+ ++r+
  CTQ30261.1 15 CPQCGAELVIRS 26
                **********97 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0052
   Ogr_Delta  1 rCPhCgapaaart 13
                +CP Cga ++ r 
  CTQ30261.1 63 ECPSCGAVMVLRQ 75
                6********9986 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.88
   Ogr_Delta   2 CPhCgapaaarts 14 
                 CP+Cg+   + ++
  CTQ30261.1 106 CPQCGQGHLVQRR 118
                 9***975444333 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.079
   Ogr_Delta   1 rCPhCgapaaarts 14 
                 +CP+C+ p  + ++
  CTQ30261.1 146 ECPECHYPLLIEKK 159
                 6****988776665 PP

>> zf-ISL3  zinc-finger of transposase IS204/IS1001/IS1096/IS1165
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.3     0.058        32       4      17 ..      14      27 ..      11      31 .. 0.74
   2 ?    4.8   0.1     0.083        45       4      14 ..      63      73 ..      60      78 .. 0.76
   3 ?    7.8   0.2    0.0099       5.4       3      15 ..     104     116 ..     102     124 .. 0.79
   4 ?    1.0   0.1       1.2   6.8e+02       4       9 ..     146     151 ..     144     161 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.058
     zf-ISL3  4 rCPnCgsktvvkhg 17
                 CP+Cg+  v + g
  CTQ30261.1 14 PCPQCGAELVIRSG 27
                5*****98655544 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.083
     zf-ISL3  4 rCPnCgsktvv 14
                 CP Cg+++v 
  CTQ30261.1 63 ECPSCGAVMVL 73
                6*****99764 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0099
     zf-ISL3   3 hrCPnCgsktvvk 15 
                 ++CP+Cg+ ++v 
  CTQ30261.1 104 IACPQCGQGHLVQ 116
                 79*****987765 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 1.2
     zf-ISL3   4 rCPnCg 9  
                  CP+C+
  CTQ30261.1 146 ECPECH 151
                 69**97 PP

>> Toprim_C_rpt  Topoisomerase C-terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.086        47       2      19 ..      16      33 ..      16      60 .. 0.88
   2 ?    7.3   0.0    0.0087       4.7       3      19 ..      66      82 ..      65      98 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.086
  Toprim_C_rpt  2 PetgepikvkeGRfGPYv 19
                  P+ g + ++++G+ GP++
    CTQ30261.1 16 PQCGAELVIRSGKHGPFL 33
                  6679999*********97 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0087
  Toprim_C_rpt  3 etgepikvkeGRfGPYv 19
                    g  ++++ GRfG ++
    CTQ30261.1 66 SCGAVMVLRQGRFGMFI 82
                  5588899*******998 PP

>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.42   2.3e+02      18      24 ..      14      20 ..       8      28 .. 0.83
   2 ?    3.7   0.0      0.12        68      18      26 ..      63      71 ..      48      78 .. 0.86
   3 ?    7.1   0.4     0.011       5.9       2      24 ..      90     111 ..      87     119 .. 0.76
   4 ?    5.0   0.5     0.049        27      13      27 ..     141     155 ..     122     162 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.42
    zf-Mss51 18 eCpdCGi 24
                 Cp+CG 
  CTQ30261.1 14 PCPQCGA 20
                7****96 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.12
    zf-Mss51 18 eCpdCGipt 26
                eCp CG ++
  CTQ30261.1 63 ECPSCGAVM 71
                9*****875 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.011
    zf-Mss51   2 CPvpkhkqt..apkhvdfeCpdCGi 24 
                 C +++      +p + ++ Cp+CG 
  CTQ30261.1  90 CEHTE---LidKPDETAIACPQCGQ 111
                 55553...233899**********5 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.049
    zf-Mss51  13 khvdfeCpdCGipty 27 
                 k+v+ eCp+C +p  
  CTQ30261.1 141 KPVAGECPECHYPLL 155
                 78899******9976 PP

>> YacG  DNA gyrase inhibitor YacG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.6     0.014       7.5       2      23 ..      14      36 ..      13      44 .. 0.84
   2 ?    2.5   0.4      0.23   1.2e+02       2      12 ..      63      73 ..      62      94 .. 0.83
   3 ?    4.7   0.0     0.047        26       1      16 [.     104     119 ..     104     122 .. 0.75
   4 ?    7.5   0.8    0.0062       3.4       2      26 ..     146     173 ..     145     175 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.014
        YacG  2 kCPtCkkevewseenpfrPF..CS 23
                 CP+C++e ++++  ++ PF  CS
  CTQ30261.1 14 PCPQCGAELVIRS-GKHGPFlgCS 36
                5*******99998.7888986666 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.23
        YacG  2 kCPtCkkevew 12
                +CP+C++ ++ 
  CTQ30261.1 63 ECPSCGAVMVL 73
                7****987655 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.047
        YacG   1 vkCPtCkkevewseen 16 
                 ++CP+C++   ++ ++
  CTQ30261.1 104 IACPQCGQGHLVQRRS 119
                 58*****987766655 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0062
        YacG   2 kCPtCkkevewse..enpfrPFC.SeRC 26 
                 +CP C+ +  +++  ++  r FC S++C
  CTQ30261.1 146 ECPECHYPLLIEKktAQGLRRFCaSKQC 173
                 6******987776336779****66677 PP

>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   0.00022      0.12       3      14 ..      11      22 ..      10      25 .. 0.85
   2 ?    1.0   0.2      0.66   3.6e+02       5      12 ..      62      69 ..      60      74 .. 0.75
   3 ?    5.0   0.1     0.037        20       3      11 ..     102     110 ..     100     115 .. 0.85
   4 ?   -2.1   1.1       6.1   3.3e+03      24      28 ..     147     151 ..     146     151 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00022
     zf-RRN7  3 kgppCgvCgcrs 14
                k++pC++Cg+ +
  CTQ30261.1 11 KNEPCPQCGAEL 22
                89*******965 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.66
     zf-RRN7  5 ppCgvCgc 12
                  C+ Cg+
  CTQ30261.1 62 QECPSCGA 69
                56888887 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.037
     zf-RRN7   3 kgppCgvCg 11 
                 + ++C++Cg
  CTQ30261.1 102 TAIACPQCG 110
                 5689****9 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 6.1
     zf-RRN7  24 CrrCh 28 
                 C +Ch
  CTQ30261.1 147 CPECH 151
                 66666 PP

>> Zn_Tnp_IS1  InsA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.4    0.0015      0.79       8      21 ..      15      28 ..      12      37 .. 0.91
   2 ?   10.2   0.7   0.00089      0.48       8      21 ..      64      77 ..      62      92 .. 0.90
   3 ?    3.5   2.5      0.11        59       6      29 ..     104     131 ..     102     135 .. 0.65
   4 ?    1.3   0.6      0.53   2.9e+02       7      12 ..     146     151 ..     142     153 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0015
  Zn_Tnp_IS1  8 CPrCsstdVyRhGk 21
                CP+C ++ V+R Gk
  CTQ30261.1 15 CPQCGAELVIRSGK 28
                *************9 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00089
  Zn_Tnp_IS1  8 CPrCsstdVyRhGk 21
                CP+C +  V R+G+
  CTQ30261.1 64 CPSCGAVMVLRQGR 77
                *************8 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.11
  Zn_Tnp_IS1   6 ihCPrCsstd.VyRh...GkstagHeRf 29 
                 i CP+C     V R    Gk     +R+
  CTQ30261.1 104 IACPQCGQGHlVQRRsrfGKTFHSCDRY 131
                 99****8888676542225555555555 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.53
  Zn_Tnp_IS1   7 hCPrCs 12 
                  CP C+
  CTQ30261.1 146 ECPECH 151
                 6****8 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.075        41       5      16 ..      15      26 ..      14      31 .. 0.79
   2 ?    4.9   0.0     0.046        25       4      11 ..      63      70 ..      63      78 .. 0.78
   3 ?    5.2   0.1     0.036        20       3      10 ..     104     111 ..      98     118 .. 0.77
   4 ?    1.8   0.1      0.43   2.4e+02       4       9 ..     146     151 ..     146     160 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.075
  zinc_ribbon_4  5 CpsCkakyeidd 16
                   Cp+C+a+  i++
     CTQ30261.1 15 CPQCGAELVIRS 26
                   ****99877665 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.046
  zinc_ribbon_4  4 tCpsCkak 11
                   +CpsC+a+
     CTQ30261.1 63 ECPSCGAV 70
                   69999886 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.036
  zinc_ribbon_4   3 itCpsCka 10 
                    i Cp+C+ 
     CTQ30261.1 104 IACPQCGQ 111
                    77888875 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.43
  zinc_ribbon_4   4 tCpsCk 9  
                    +Cp+C+
     CTQ30261.1 146 ECPECH 151
                    699998 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.031        17       3      12 ..      13      22 ..      11      25 .. 0.82
   2 ?    2.4   0.1      0.21   1.2e+02       3      12 ..      62      71 ..      60      75 .. 0.81
   3 ?    4.0   0.1     0.072        39       3      10 ..     104     111 ..     102     116 .. 0.86
   4 ?    2.5   0.1       0.2   1.1e+02       5      15 ..     147     157 ..     145     160 .. 0.77
   5 ?    2.2   0.2      0.26   1.4e+02       7      14 ..     172     179 ..     168     180 .] 0.88

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.031
      zf_UBZ  3 ylCerCgkei 12
                 +C++Cg+e+
  CTQ30261.1 13 EPCPQCGAEL 22
                58*****975 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.21
      zf_UBZ  3 ylCerCgkei 12
                + C+ Cg+ +
  CTQ30261.1 62 QECPSCGAVM 71
                67*****987 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.072
      zf_UBZ   3 ylCerCgk 10 
                 + C++Cg+
  CTQ30261.1 104 IACPQCGQ 111
                 67*****8 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.2
      zf_UBZ   5 CerCgkeipes 15 
                 C++C+ +++++
  CTQ30261.1 147 CPECHYPLLIE 157
                 ****9877766 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.26
      zf_UBZ   7 rCgkeipe 14 
                 +Cgk+ip 
  CTQ30261.1 172 QCGKPIPA 179
                 8*****96 PP

>> DUF35_N  Rubredoxin-like zinc ribbon domain (DUF35_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.45   2.4e+02      28      33 ..      15      20 ..      11      23 .. 0.77
   2 ?   11.0   0.1   0.00057      0.31       9      22 ..      59      72 ..      57      78 .. 0.84
   3 ?    1.8   0.2      0.41   2.2e+02      27      32 ..     105     110 ..     102     115 .. 0.66
   4 ?   -1.9   0.3       6.1   3.3e+03      21      31 ..     120     134 ..     117     137 .. 0.67
   5 ?   -0.8   0.7       2.8   1.5e+03      28      32 ..     147     151 ..     142     151 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.45
     DUF35_N 28 CphCgs 33
                Cp Cg+
  CTQ30261.1 15 CPQCGA 20
                888875 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00057
     DUF35_N  9 LvgqrCpdCGtvqf 22
                L gq Cp+CG+v +
  CTQ30261.1 59 LEGQECPSCGAVMV 72
                89*********976 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.41
     DUF35_N  27 vCphCg 32 
                 +Cp Cg
  CTQ30261.1 105 ACPQCG 110
                 466665 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 6.1
     DUF35_N  21 qfPPr.avC...phC 31 
                 +f ++ ++C   p C
  CTQ30261.1 120 RFGKTfHSCdryPDC 134
                 666677778777777 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 2.8
     DUF35_N  28 CphCg 32 
                 Cp C+
  CTQ30261.1 147 CPECH 151
                 88886 PP

>> Ribosomal_S27e  Ribosomal protein S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.36   1.9e+02      10      19 ..      15      24 ..       4      31 .. 0.85
   2 ?    0.8   0.2      0.74     4e+02      29      37 ..      64      72 ..      60      77 .. 0.74
   3 ?    9.6   0.3    0.0013      0.72      11      34 ..      88     111 ..      78     118 .. 0.88
   4 ?   -1.2   0.0         3   1.6e+03      10      14 ..     147     151 ..     143     164 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.36
                    -TTTS-EEEE CS
  Ribosomal_S27e 10 CpdCenetvv 19
                    Cp+C++e v+
      CTQ30261.1 15 CPQCGAELVI 24
                    9999988777 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.74
                    ESSSTCEEE CS
  Ribosomal_S27e 29 CisCgkvLv 37
                    C sCg v+v
      CTQ30261.1 64 CPSCGAVMV 72
                    777777765 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0013
                     TTTS-EEEEESS-SS-EEESSSTC CS
  Ribosomal_S27e  11 pdCenetvvFshaatvvkCisCgk 34 
                     p+Ce++  +    +t++ C +Cg+
      CTQ30261.1  88 PECEHTELIDKPDETAIACPQCGQ 111
                     89*******9999**********8 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 3
                     -TTTS CS
  Ribosomal_S27e  10 CpdCe 14 
                     Cp+C 
      CTQ30261.1 147 CPECH 151
                     99996 PP

>> DUF2752  Protein of unknown function (DUF2752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.5      0.29   1.6e+02      10      16 ..      14      20 ..      12      38 .. 0.78
   2 ?    5.1   0.0     0.043        24       6      16 ..      59      69 ..      55      78 .. 0.81
   3 ?    3.5   0.1      0.14        74       7      17 ..     102     112 ..     101     117 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.29
     DUF2752 10 pCPGCGl 16
                pCP CG 
  CTQ30261.1 14 PCPQCGA 20
                8*****6 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.043
     DUF2752  6 ltGipCPGCGl 16
                l G +CP CG 
  CTQ30261.1 59 LEGQECPSCGA 69
                55789*****6 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.14
     DUF2752   7 tGipCPGCGlt 17 
                 t i CP CG  
  CTQ30261.1 102 TAIACPQCGQG 112
                 6799*****65 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0065       3.5      23      35 ..      14      26 ..       5      26 .. 0.84
   2 ?    7.2   0.7    0.0092         5       4      34 ..      64     117 ..      63     118 .. 0.75
   3 ?    2.2   0.5      0.33   1.8e+02       9      31 ..     123     154 ..     122     157 .. 0.57
   4 ?   -1.2   0.4       3.8   2.1e+03       1       8 [.     165     174 ..     165     176 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0065
                B-TTT--.-B--G CS
     ADK_lid 23 lCDkCGepLvqRs 35
                 C  CG +Lv Rs
  CTQ30261.1 14 PCPQCGAELVIRS 26
                4**********97 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0092
                 -TTT--EE....................ETTT.B--.SSTTB-TTT--..-B-- CS
     ADK_lid   4 CpkCGrsY....................hvvf.npP.kveglCDkCGe.pLvqR 34 
                 Cp+CG++                     h ++  +P  +   C  CG   LvqR
  CTQ30261.1  64 CPSCGAVMvlrqgrfgmfigcsrypeceHTELiDKPdETAIACPQCGQgHLVQR 117
                 888888888888888888888888888887766556256667*****978**99 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.33
                 -EEETT.......TB--S.....STTB-TTT--.- CS
     ADK_lid   9 rsYhvv.......fnpPk.....veglCDkCGepL 31 
                 +++h         f         v g C +C+ pL
  CTQ30261.1 123 KTFHSCdrypdcqF---VinfkpVAGECPECHYPL 154
                 56664444444442...0222238999****9997 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 3.8
                 EEE-..TTT- CS
     ADK_lid   1 RrvC..pkCG 8  
                 Rr C  ++CG
  CTQ30261.1 165 RRFCasKQCG 174
                 8999555588 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2    0.0011      0.58       4      33 ..      15      47 ..      14      50 .. 0.87
   2 ?    5.2   0.0     0.035        19       4      20 ..      64      80 ..      63      86 .. 0.79
   3 ?    2.1   0.1      0.32   1.8e+02       4       8 ..     106     110 ..      95     129 .. 0.73
   4 ?   -2.6   3.5       9.9   5.4e+03       4       8 ..     147     151 ..     146     174 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0011
                    ESTTTSBEEEEECSCCCEEEESS...SS-EEES CS
  RNA_POL_M_15KD  4 CpkCgNlLlpkedkegknfeCrq...CgYeepa 33
                    Cp Cg  L ++++k g  + C+    C+Y+ p 
      CTQ30261.1 15 CPQCGAELVIRSGKHGPFLGCSHypdCDYIRPL 47
                    ****************99***955559999996 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.035
                    ESTTTSBEEEEECSCCC CS
  RNA_POL_M_15KD  4 CpkCgNlLlpkedkegk 20
                    Cp+Cg  +  ++++ g 
      CTQ30261.1 64 CPSCGAVMVLRQGRFGM 80
                    *****999999888774 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.32
                     ESTTT CS
  RNA_POL_M_15KD   4 CpkCg 8  
                     Cp Cg
      CTQ30261.1 106 CPQCG 110
                     55554 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 9.9
                     ESTTT CS
  RNA_POL_M_15KD   4 CpkCg 8  
                     Cp+C 
      CTQ30261.1 147 CPECH 151
                     66664 PP

>> DUF983  Protein of unknown function (DUF983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.067        36       8      27 ..      12      31 ..       7      33 .. 0.82
   2 ?    0.6   0.0       1.4   7.8e+02       9      17 ..      62      70 ..      59      81 .. 0.83
   3 ?    1.7   0.0      0.63   3.4e+02       9      18 ..     104     113 ..     101     127 .. 0.75
   4 ?    0.3   0.0       1.8   9.6e+02       7      18 ..     143     154 ..     139     161 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.067
      DUF983  8 adaCeaCgldlsharaddgP 27
                ++ C++Cg++l       gP
  CTQ30261.1 12 NEPCPQCGAELVIRSGKHGP 31
                678*******9988887777 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.4
      DUF983  9 daCeaCgld 17
                ++C++Cg+ 
  CTQ30261.1 62 QECPSCGAV 70
                68*****75 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.63
      DUF983   9 daCeaCgldl 18 
                  aC++Cg+  
  CTQ30261.1 104 IACPQCGQGH 113
                 58*****965 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 1.8
      DUF983   7 vadaCeaCgldl 18 
                 va +C++C   l
  CTQ30261.1 143 VAGECPECHYPL 154
                 7889****8766 PP

>> zf-CGNR  CGNR zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       5.7   3.1e+03       4      15 ..      63      72 ..      62      74 .. 0.75
   2 ?   -2.3   0.1       7.9   4.3e+03       4      13 ..     127     137 ..     125     138 .. 0.65
   3 ?   10.3   0.1   0.00091      0.49      13      33 ..     155     175 ..     144     178 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.7
                E--STT---EEE CS
     zf-CGNR  4 aCaapdCrwvfv 15
                +C  p C++v v
  CTQ30261.1 63 EC--PSCGAVMV 72
                57..88998865 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.9
                 E-.-STT---E CS
     zf-CGNR   4 aC.aapdCrwv 13 
                  C + pdC+ v
  CTQ30261.1 127 SCdRYPDCQFV 137
                 57456899865 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00091
                 EEE--SSS-----SSHH.HHH CS
     zf-CGNR  13 vfvDtSrngsrrWCsmraCGn 33 
                 +   ++ +g rr+C  ++CG+
  CTQ30261.1 155 LIEKKTAQGLRRFCASKQCGK 175
                 455788999***********6 PP

>> VP_N-CPKC  Virion protein N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1      0.19     1e+02      17      24 ..      13      20 ..      10      27 .. 0.81
   2 ?    5.2   0.0     0.038        21      17      25 ..      62      70 ..      57      79 .. 0.81
   3 ?   -0.5   0.0       2.3   1.3e+03      19      23 ..     106     110 ..     102     118 .. 0.85
   4 ?    1.0   0.3       0.8   4.3e+02      18      22 ..     146     150 ..     143     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.19
   VP_N-CPKC 17 EECPKCsA 24
                E CP+C A
  CTQ30261.1 13 EPCPQCGA 20
                78****98 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.038
   VP_N-CPKC 17 EECPKCsAL 25
                 ECP C A+
  CTQ30261.1 62 QECPSCGAV 70
                6*****996 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.3
   VP_N-CPKC  19 CPKCs 23 
                 CP+C 
  CTQ30261.1 106 CPQCG 110
                 ****5 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.8
   VP_N-CPKC  18 ECPKC 22 
                 ECP C
  CTQ30261.1 146 ECPEC 150
                 9**** PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1      0.11        57      86     103 ..      12      28 ..       3      30 .. 0.68
   2 ?    0.5   7.8       1.1   6.1e+02      73      95 ..      64     112 ..      15     123 .. 0.66
   3 ?    2.9   6.0      0.19   1.1e+02      60      93 ..      93     151 ..      88     177 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.11
                 HHS-TTTSSS-EEEEESS CS
        HypA  86 alrCpkCgsadveivsGe 103
                 ++ Cp+Cg++ + i sG+
  CTQ30261.1  12 NEPCPQCGAE-LVIRSGK 28 
                 357****995.5566665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.1
                 ETTTS-EEECHH.HHH..........................S-TTTSSS CS
        HypA  73 CreCgkefelee.kal..........................rCpkCgsa 95 
                 C +Cg+ + l++ + +                           Cp+Cg+ 
  CTQ30261.1  64 CPSCGAVMVLRQgR-FgmfigcsrypecehtelidkpdetaiACPQCGQG 112
                 55555555544321.23345555555555555555555555588888875 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.19
                 -EEEEEEE--EEEETTTS-EEECHHH.HH........................S-TTTS CS
        HypA  60 aeLeieevpvkvrCreCgkefeleek.al........................rCpkCg 93 
                 +eL  +  +  + C +Cg+   ++++ ++                        +Cp+C+
  CTQ30261.1  93 TELIDKPDETAIACPQCGQGHLVQRRsRFgktfhscdrypdcqfvinfkpvagECPECH 151
                 55555555666666666654444433222555666666666666666666666666665 PP

>> Mu-like_Com  Mu-like prophage protein Com
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.57   3.1e+02      27      32 ..      15      20 ..      11      26 .. 0.87
   2 ?    1.8   0.1      0.31   1.7e+02      27      34 ..      64      71 ..      60      77 .. 0.80
   3 ?    7.3   0.1    0.0057       3.1      21      32 ..     100     111 ..      93     120 .. 0.85
   4 ?   -2.0   0.1       4.6   2.5e+03       7      11 ..     147     151 ..     144     161 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.57
  Mu-like_Com 27 CPRCGt 32
                 CP CG 
   CTQ30261.1 15 CPQCGA 20
                 ****96 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.31
  Mu-like_Com 27 CPRCGtLn 34
                 CP CG + 
   CTQ30261.1 64 CPSCGAVM 71
                 *****875 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0057
  Mu-like_Com  21 DeltiKCPRCGt 32 
                  De  i CP CG 
   CTQ30261.1 100 DETAIACPQCGQ 111
                  8999*******6 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 4.6
  Mu-like_Com   7 CGeCa 11 
                  C eC+
   CTQ30261.1 147 CPECH 151
                  55665 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.091        49      21      35 ..      11      23 ..       4      27 .. 0.64
   2 ?   -1.2   0.0       3.8   2.1e+03       8      21 ..      39      50 ..      39      52 .. 0.85
   3 ?    1.2   0.2      0.63   3.4e+02       7      11 ..      64      68 ..      63      72 .. 0.88
   4 ?    6.8   1.7     0.011       6.2       7      27 ..     106     128 ..     102     140 .. 0.64
   5 ?    0.5   0.1       1.1   5.7e+02       6      11 ..     146     151 ..     144     160 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.091
  Zn_ribbon_SprT 21 rrhnYrCrrCkgtLr 35
                    +++   C++C+ +L+
      CTQ30261.1 11 KNEP--CPQCGAELV 23
                    5555..777776665 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.8
  Zn_ribbon_SprT  8 tgCgreythhlsir 21
                    ++C+  y ++l+++
      CTQ30261.1 39 PDCD--YIRPLKSQ 50
                    6899..99999986 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.63
  Zn_ribbon_SprT  7 CtgCg 11
                    C++Cg
      CTQ30261.1 64 CPSCG 68
                    ****9 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.011
  Zn_ribbon_SprT   7 CtgCgreythhlsirrhn.....YrC 27 
                     C++Cg     hl  rr +     + C
      CTQ30261.1 106 CPQCG---QGHLVQRRSRfgktfHSC 128
                     88888...444444444433366666 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 1.1
  Zn_ribbon_SprT   6 rCtgCg 11 
                      C+ C+
      CTQ30261.1 146 ECPECH 151
                     599998 PP

>> DUF1272  Protein of unknown function (DUF1272)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0075       4.1      42      54 ..      13      25 ..       8      28 .. 0.85
   2 ?    3.4   0.1      0.15        82      42      54 ..      62      74 ..      55      77 .. 0.78
   3 ?    5.6   0.6     0.032        17      42      56 ..     104     119 ..      88     120 .. 0.83
   4 ?    0.2   0.3       1.5   8.2e+02      41      48 ..     144     151 ..     133     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0075
     DUF1272 42 nvCPncgGelvkR 54
                + CP+cg elv R
  CTQ30261.1 13 EPCPQCGAELVIR 25
                67*********98 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.15
     DUF1272 42 nvCPncgGelvkR 54
                + CP cg  +v R
  CTQ30261.1 62 QECPSCGAVMVLR 74
                68*****988877 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.032
     DUF1272  42 nvCPncg.GelvkRPi 56 
                   CP+cg G lv+R  
  CTQ30261.1 104 IACPQCGqGHLVQRRS 119
                 57****8899**9965 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.5
     DUF1272  41 envCPncg 48 
                 ++ CP+c 
  CTQ30261.1 144 AGECPECH 151
                 56788885 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.2     0.017       9.4       4      12 ..      14      22 ..      13      37 .. 0.77
   2 ?    5.9   0.5     0.023        12       5      26 ..      64     110 ..      63     111 .. 0.85
   3 ?    1.5   2.1      0.53   2.9e+02      22      27 ..     147     152 ..     146     152 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.017
  PhnA_Zn_Ribbon  4 kCplCaSey 12
                    +Cp+C++e 
      CTQ30261.1 14 PCPQCGAEL 22
                    6****9996 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.023
  PhnA_Zn_Ribbon   5 CplCaSeytY.........................edgallvCpeCa 26 
                     Cp C++  ++                          d +   Cp C+
      CTQ30261.1  64 CPSCGAVMVLrqgrfgmfigcsrypecehtelidkPDETAIACPQCG 110
                     99999999998888888888888899999999999999999999997 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.53
  PhnA_Zn_Ribbon  22 CpeCah 27 
                     CpeC++
      CTQ30261.1 147 CPECHY 152
                     999986 PP

>> Terminase_GpA  Phage terminase large subunit (GpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.9       1.1   5.8e+02     200     211 ..      14      25 ..      12      42 .. 0.86
   2 ?   11.0   1.0   0.00021      0.11     200     236 ..      63     112 ..      61     124 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
  Terminase_GpA 200 pCphCgelqels 211
                    pCp+Cg++ +++
     CTQ30261.1  14 PCPQCGAELVIR 25 
                    9*****998765 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00021
  Terminase_GpA 200 pCphCgelqelsferlkw.......pege......aeekaryvCphcgsl 236
                    +Cp+Cg+ ++l+  r+         pe e      ++++++++Cp+cg+ 
     CTQ30261.1  63 ECPSCGAVMVLRQGRFGMfigcsryPECEhtelidKPDETAIACPQCGQG 112
                    7*********9999955555555554433455777************985 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.3     0.013         7       2      12 ..      15      25 ..      14      37 .. 0.78
   2 ?    4.4   0.0     0.044        24       2      10 ..      64      72 ..      59      82 .. 0.76
   3 ?    3.1   1.0      0.11        61       2      13 ..     106     118 ..     105     134 .. 0.68
   4 ?    1.8   1.0      0.29   1.5e+02       2      11 ..     147     156 ..     146     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.013
    zf-TFIIB  2 CPkCqdelees 12
                CP C++el++ 
  CTQ30261.1 15 CPQCGAELVIR 25
                *******9975 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.044
    zf-TFIIB  2 CPkCqdele 10
                CP+C++ ++
  CTQ30261.1 64 CPSCGAVMV 72
                888887665 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.11
    zf-TFIIB   2 CPkCqd.eleese 13 
                 CP C++  l++ +
  CTQ30261.1 106 CPQCGQgHLVQRR 118
                 8889875677555 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.29
    zf-TFIIB   2 CPkCqdelee 11 
                 CP C+ +l +
  CTQ30261.1 147 CPECHYPLLI 156
                 9999887764 PP

>> PADR1  PADR1 (NUC008) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.7     0.026        14      14      29 ..      13      27 ..      11      44 .. 0.83
   2 ?    1.1   1.5      0.62   3.4e+02      14      27 ..      62      74 ..      60      94 .. 0.71
   3 ?    7.8   0.8     0.005       2.7      15      30 ..     105     120 ..     103     139 .. 0.78
   4 ?    3.6   0.1      0.11        59      14      20 ..     145     151 ..     143     162 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.026
       PADR1 14 ekCpeCkegqlvfdss 29
                e+Cp+C+  +lv +s+
  CTQ30261.1 13 EPCPQCG-AELVIRSG 27
                79*****.88887765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.62
       PADR1 14 ekCpeCkegqlvfd 27
                ++Cp+C+   +v++
  CTQ30261.1 62 QECPSCG-AVMVLR 74
                58****9.555544 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.005
       PADR1  15 kCpeCkegqlvfdssg 30 
                  Cp+C++g+lv ++s+
  CTQ30261.1 105 ACPQCGQGHLVQRRSR 120
                 6*********977664 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.11
       PADR1  14 ekCpeCk 20 
                 ++CpeC+
  CTQ30261.1 145 GECPECH 151
                 68****9 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.4    0.0068       3.7       3      18 ..      15      28 ..      15      45 .. 0.65
   2 ?    4.2   0.1     0.076        41      25      31 ..      64      70 ..      63      75 .. 0.58
   3 ?    4.3   1.3     0.072        39       3      10 ..     106     114 ..     106     137 .. 0.81
   4 ?   -0.1   0.1       1.6   8.8e+02      25      30 ..     147     152 ..     146     155 .. 0.78
   5 ?    2.1   0.2      0.35   1.9e+02       1      10 [.     166     177 ..     166     180 .] 0.75

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0068
                -TTT--B-EEE--TT- CS
   Nudix_N_2  3 CsqCGtpvelripdgD 18
                C+qCG+++  r   g 
  CTQ30261.1 15 CPQCGAELVIRS--GK 28
                ******976553..55 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.076
                ETTTTEE CS
   Nudix_N_2 25 CpaCgti 31
                Cp+Cg++
  CTQ30261.1 64 CPSCGAV 70
                5555554 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.072
                 -TTT--B.- CS
   Nudix_N_2   3 CsqCGtp.v 10 
                 C+qCG+  +
  CTQ30261.1 106 CPQCGQGhL 114
                 9****9754 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1.6
                 ETTTTE CS
   Nudix_N_2  25 CpaCgt 30 
                 Cp C++
  CTQ30261.1 147 CPECHY 152
                 788875 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.35
                 -B-..TTT--B- CS
   Nudix_N_2   1 kFC..sqCGtpv 10 
                 +FC  +qCG+p+
  CTQ30261.1 166 RFCasKQCGKPI 177
                 7884459**995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1397.29
//
Query:       CTQ30262.1  [L=157]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-58  194.8   5.5    8.1e-58  194.6   5.5    1.0  1  DUF494    Protein of unknown function (DUF494)


Domain annotation for each model (and alignments):
>> DUF494  Protein of unknown function (DUF494)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.6   5.5   4.5e-62   8.1e-58       1     152 []       1     157 []       1     157 [] 0.98

  Alignments for each domain:
  == domain 1  score: 194.6 bits;  conditional E-value: 4.5e-62
      DUF494   1 mfdvLvYLfenyi..eaeacpdedeLereLsaaGFeeeeIqkAldwleeLaaaaeeeeeaal..asssslRiyteeEqekLdaeargfllfLeqagvld 95 
                 mfdvL+YLfe+yi  eae+++d+d+L+r+L++aGFe+e+I++Al wle+La+ +e   e+++  +++ slR+yteeE+++Lda +rgfllfLeq++vl+
  CTQ30262.1   1 MFDVLMYLFETYIhsEAEMRVDQDKLTRDLTDAGFEREDIYNALMWLEKLADYQEGLVEPMQlaSDPLSLRVYTEEECQRLDASCRGFLLFLEQIQVLN 99 
                 9************999999*************************************999987889999******************************* PP

      DUF494  96 aetrElvidramaldeeelsledlkwvvlmvlwnq.geekaalileellldeeerllh 152
                  etrE+vi+r++ald++e++ledlkwv+lmvl+n  g e+a++++eell++ +e++lh
  CTQ30262.1 100 LETREMVIERVLALDTAEFELEDLKWVILMVLFNIpGCENAYQQMEELLFEVNEGMLH 157
                 ******************************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1166.99
//
Query:       CTQ30263.1  [L=374]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-71  239.5   0.0    2.8e-71  239.1   0.0    1.1  1  DNA_processg_A  DNA recombination-mediator protein A
    2.5e-10   40.3   0.5    5.6e-10   39.2   0.5    1.6  1  DprA_WH         DprA winged helix domain
  ------ inclusion threshold ------
        0.1   12.2   0.1       0.19   11.3   0.1    1.4  1  LDcluster4      SLOG cluster4 family


Domain annotation for each model (and alignments):
>> DNA_processg_A  DNA recombination-mediator protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.1   0.0   4.6e-75   2.8e-71       3     209 ..      68     274 ..      66     275 .. 0.98

  Alignments for each domain:
  == domain 1  score: 239.1 bits;  conditional E-value: 4.6e-75
  DNA_processg_A   3 ekagiklltledkeYPeklkeikdpPlvLfvkGnlellekravaiVGtRkaseygkevakklakelaeagitivSGlAlGiDaaahraaleaggk 97 
                     e+ + +ll  +d++YP +lk+i+d P +L v G l+ll++ ++a++G+R+ s yg ++ k +++ la++giti SGlAlGiD +ahr+al+a+gk
      CTQ30263.1  68 EQPDHHLLRGDDPRYPLRLKSIADYPGALLVSGGLALLHSAQLAVIGSRSHSWYGARWGKLFSETLAHKGITITSGLALGIDGVAHRGALAAEGK 162
                     66777888899************************************************************************************ PP

  DNA_processg_A  98 tvavlgtgldkiyPkenrklleeiaeegglllseyppgtkpkkenFpeRnriiaglseavlvveaaekSGalitaelAlelgrevfavpgditsk 192
                     t+avlg+gl+++yP+++++l+++i+++gg l+se+p  t+p + +Fp+Rnrii+gls +vlv+eaa +SG+l t+++Ale+gr+vfa+pg i ++
      CTQ30263.1 163 TIAVLGNGLSQVYPRRHATLARQIIDNGGTLVSEFPLITPPLPAHFPRRNRIISGLSLGVLVIEAALRSGSLVTVRCALEQGRDVFALPGAIGNP 257
                     *********************************************************************************************** PP

  DNA_processg_A 193 esagtnklikegaklvt 209
                      s+g++ lik+ga  vt
      CTQ30263.1 258 GSEGPHWLIKQGAVPVT 274
                     *************9987 PP

>> DprA_WH  DprA winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.5   9.3e-14   5.6e-10      16      61 .]     312     357 ..     302     357 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 9.3e-14
     DprA_WH  16 rvLaaLgpePvhvDqLvrrtglpaaevsaaLleLELaGlverlpGg 61 
                  +La +g e ++vD +++r+g ++ +  a+LleLELaG +++ pGg
  CTQ30263.1 312 ELLANVGDEVTPVDVVAERAGQSVPVTVAQLLELELAGWIAAVPGG 357
                 689******************************************8 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.2e-05      0.19       3     128 ..     109     252 ..     107     268 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.2e-05
  LDcluster4   3 kigVmGsaete.akeealelaeelGrliAkegavlltGgrtGvmeaaskGakeagGltvGilpassekehsnk................yvdiiiyT.. 82 
                 + +V+Gs +++ +     +  +   + +A++g+++ +G   G+  +a +Ga  a+G t+ +l +  ++    +                + +++++T  
  CTQ30263.1 109 QLAVIGSRSHSwY---GARWGKLFSETLAHKGITITSGLALGIDGVAHRGALAAEGKTIAVLGNGLSQVYP-RrhatlarqiidnggtlVSEFPLITpp 203
                 6678888884433...35777888999*******9999999******************999883333333.246778999999999977799999955 PP

  LDcluster4  83 .GlglagRnlilvlssdvvia..iggrsGTlsEialaleegkpvivlkg 128
                     +  Rn i+   s  v++     rsG+l  +  ale+g+ v +l g
  CTQ30263.1 204 lPAHFPRRNRIISGLSLGVLVieAALRSGSLVTVRCALEQGRDVFALPG 252
                 5488888999887666554440156899**************9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2940.85
//
Query:       CTQ30264.1  [L=169]
Description: peptide deformylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-50  171.3   0.3    1.3e-50  171.1   0.3    1.0  1  Pep_deformylase  Polypeptide deformylase


Domain annotation for each model (and alignments):
>> Pep_deformylase  Polypeptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   0.3   7.2e-55   1.3e-50       2     158 ..       4     152 ..       3     153 .. 0.95

  Alignments for each domain:
  == domain 1  score: 171.1 bits;  conditional E-value: 7.2e-55
                      GG---TT-GGGCS--B---BSSHHHHHHHHHHHHHHHHHCT-SEEEGGGGT--BSEEEEECCSS-ETT....SEEEEEEEEEEECSCEEECCEE CS
  Pep_deformylase   2 kkivkvgdpvLrekakpvekfeskelekllekmletmkeakgvgLAApQigvnkrlfvielpseeeeeeenkeltvliNPkitskseetitdeE 95 
                       +++ ++d++Lr++a+pv++++ + +++++++m++tm++ +g+gLAA+Q+++++r++vi++++++ee+       vliNP++  ++++    eE
       CTQ30264.1   4 LQVLHIPDERLRKVAEPVKEVNAE-IQRIVDDMFDTMYAEEGIGLAATQVDIHQRIIVIDVSENREEQ------LVLINPEM-LEKDGETGIEE 89 
                      57999**************98866.**************************************99985......6*******.6677777889* PP

                      --TTSTT--CEEEEESCEEEEEE-TTS-EEEEEEEHHHHHHHHHHHHHCTT--GGGGC-TTXX CS
  Pep_deformylase  96 gClSvpgieakVeRskrikvkyldltgkeveleaegllArvlqHEiDhlnGklfidridksek 158
                      gClS+p+++a V+R++++k+++ld++gk +elea+gllA+++qHE+Dhl Gklfid ++++++
       CTQ30264.1  90 GCLSIPEQRALVPRAEKVKIRALDRDGKSFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQ 152
                      **********************************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1400.23
//
Query:       CTQ30265.1  [L=315]
Description: 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-54  182.6   0.0    8.6e-54  182.0   0.0    1.2  1  Formyl_trans_N  Formyl transferase
    2.7e-32  111.0   0.1      4e-32  110.4   0.1    1.3  1  Formyl_trans_C  Formyl transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.0   0.0   9.6e-58   8.6e-54       2     180 ..       6     183 ..       5     184 .. 0.97

  Alignments for each domain:
  == domain 1  score: 182.0 bits;  conditional E-value: 9.6e-58
                     EEEEEESESSHHHHHHHHHHHHTTSECEEEEEEESCTTEHCHHHHHHCCHCCCECHHCC...SCCCCCCCHHHHHHHHCTT-SEEEEES--S--- CS
  Formyl_trans_N   2 kivvlisgtgsnlqalldalkkgsleadvvlvvsnkdkaaglekaeaasiptkvfeekk...leprsqfeeelaeelkelkadlivlagymkllp 93 
                     +i++   gt+++++++ldal +++++  vv v++++d++ag++k+ ++s+++ ++e+++   ++p+s++++++++ ++ l+ad++v+++y+++lp
      CTQ30265.1   6 RIIFA--GTPDFAARHLDALLSSEHQ--VVGVFTQPDRPAGRGKKLMPSPVKVLAEAHNlpvFQPSSLRPQDNQRLVADLGADIMVVVAYGLILP 96 
                     56666..******************7..****************************9999*********************************** PP

                     HHHHHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N  94 kelvqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehkalvea 180
                     k++++++rl+++n+H+SLLPr++Gaa+iqr+l+aGd etGvti+++d +lDtG++l++ +++i+aedt+++l++++a++++++l+ +
      CTQ30265.1  97 KAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDSETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGSLYDKLAELGPQGLLAT 183
                     *********************************************************************************999865 PP

>> Formyl_trans_C  Formyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.1   4.5e-36     4e-32       1      99 [.     207     304 ..     207     305 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 4.5e-36
                     ..-GGGGB--TTSBHHHHHHHHHHT-TS--EEEEETTEEEEEEEEEEE-S--SS-.TTSEEETT..TEEEE-SBSEEEEEEEEETTS--EEHHHH CS
  Formyl_trans_C   1 kikkedgridwnqsaeeihnlvrglspwPgayttlngkrvkllkaevvsesssaespGtivavdkggllvacgdgallilelqlegkkamsaedf 95 
                     k++ke++ridw+ sa+++++ +r+++pwP  +++++g++vk+++a+v  e+++ae pGtiva  k+g++va+gdg+l +++lq++gkkamsa+d+
      CTQ30265.1 207 KLSKEEARIDWSLSAAQLERCIRAFNPWPMSWLEIDGQPVKVWRASVIAEAAHAE-PGTIVAATKQGIQVATGDGILSLESLQPAGKKAMSAQDL 300
                     89**********************************************9999999.*************************************** PP

                     HHH. CS
  Formyl_trans_C  96 lngl 99 
                     ln+ 
      CTQ30265.1 301 LNSR 304
                     *986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2589.64
//
Query:       CTQ30266.1  [L=431]
Description: 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-76  256.6   0.0    2.1e-76  256.1   0.0    1.2  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    1.5e-25   90.0   0.0    2.7e-25   89.1   0.0    1.4  1  NusB             NusB family
    1.9e-09   37.5   0.0    8.3e-09   35.4   0.0    1.9  2  Methyltransf_31  Methyltransferase domain
    9.4e-07   29.1   0.0    1.7e-06   28.3   0.0    1.3  1  FtsJ             FtsJ-like methyltransferase
    8.3e-06   26.4   0.0      4e-05   24.2   0.0    2.1  2  Methyltransf_25  Methyltransferase domain
    1.2e-05   25.0   0.0    0.00015   21.3   0.0    2.2  2  MTS              Methyltransferase small domain
    0.00045   19.8   0.0     0.0012   18.4   0.0    1.6  2  Methyltransf_5   MraW methylase family
      0.001   19.5   0.0     0.0023   18.4   0.0    1.6  1  Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransfer
     0.0053   16.4   0.0     0.0097   15.5   0.0    1.5  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.025   14.2   0.0    1.4  1  Cons_hypoth95    Conserved hypothetical protein 95
      0.058   12.7   0.0       0.18   11.1   0.0    1.7  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
       0.17   12.2   0.1       0.45   10.9   0.0    1.7  1  TAF6_C           TAF6 C-terminal HEAT repeat domain


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.1   0.0   1.4e-79   2.1e-76       3     199 ..     241     426 ..     239     427 .. 0.97

  Alignments for each domain:
  == domain 1  score: 256.1 bits;  conditional E-value: 1.4e-79
                      HH---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC..EEEEEEEE--CCGGGTT CS
  Methyltr_RsmB-F   3 lLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaPCsgtgvir 96 
                       L+p+++e+ilDlcaaPGgKTthi+e+ +++++v+Avd++++Rl+rv++nlkrLg++ + v ++D+r +++++g+e+fDriLlDaPCs+tgvir
       CTQ30266.1 241 YLQPENGERILDLCAAPGGKTTHILEV-APQAQVMAVDIDEQRLSRVYDNLKRLGMK-AEVKQGDGRFPEQWCGNEQFDRILLDAPCSATGVIR 332
                      79*************************.9****************************.************************************ PP

                      T-TCHHHH--HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH-TTEEEESSBSTTSTTSSECEECTSEEE-TTTTS CS
  Methyltr_RsmB-F  97 rdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepkglklgeeagtlrllPhten 190
                      r+pd+k++r+++dia+la+lq e+l+a++++lk+gG+lvY+TCs+l+eEn+++i+++L +++d+el  t     + ++ g+++     lP+ e+
       CTQ30266.1 333 RHPDIKWLRRDRDIAELAQLQAEILNATWTHLKPGGTLVYATCSILPEENSQQIAAFLARTPDAELHATG----TPASPGQQN-----LPGVEE 417
                      *********************************************************************4....556899999.....****** PP

                      S-SEEEEEE CS
  Methyltr_RsmB-F 191 kdgffiakl 199
                       dgff+akl
       CTQ30266.1 418 GDGFFYAKL 426
                      ********9 PP

>> NusB  NusB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   1.8e-28   2.7e-25       2     134 .]       6     127 ..       5     127 .. 0.98

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 1.8e-28
                 HHHHHHHHHHHHHHHH-S-HHHHHHHHHHHT-.......--HHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT--GGGS-HHHHHHHHHHHHHHTTS-SS CS
        NusB   2 kaRelalqalyqveinkedeeekeailqealnklleeedldeedkafltelvkgvlrnleelDeliekllknwplerlskvdraiLrlavyellylddv 100
                 + R+la+qa+ qv        ek+++l ++l     +++++++dka+l+el++gvlr l +l++li+kl+  +p+   +++++ ++++++y+lly+ ++
  CTQ30266.1   6 NLRSLAAQAIEQV-------VEKGQSLSNVLP--PLQQKVSDKDKALLQELCFGVLRTLSQLEWLISKLM-ARPMTGKQRTVHFLIMVGLYQLLYT-RI 93 
                 579**********.......************..99********************************99.*************************.** PP

                 HHHHHHH.HHHHHHHHS-HHHHHHHHHHHHHHHH CS
        NusB 101 PakvaineavelakkygdeksakFvNgVLrkvar 134
                 P+++a+ e+ve a + ++++ ++++NgVLr+++r
  CTQ30266.1  94 PPHAALAETVEGAVAIKRPQLKGLINGVLRQFQR 127
                 ******************************9986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.86   1.3e+03     105     150 ..     105     167 ..      96     169 .. 0.45
   2 !   35.4   0.0   5.5e-12   8.3e-09       2     116 ..     245     379 ..     244     417 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.86
  Methyltransf_31 105 gilliedpr...llaelp....akveeeskay..evvegak............igtqkdelyellee 150
                      g+++i  p+   l    +    ++++++++a+  e +e+              + ++ ++++e++e+
       CTQ30266.1 105 GAVAIKRPQlkgL----IngvlRQFQRQQEALlaEFAEHENrylhpkwllkrlQQAWPQQWQEIVEA 167
                      5555555553331....22222333333333333222222233333344444334488888888876 PP

  == domain 2  score: 35.4 bits;  conditional E-value: 5.5e-12
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieelekl.ledekfDlilsnevl.......... 84 
                      ++g r+lDl ++ G +t  +  e+ p+a+v+ +Di+e+ +++   n+++lg + +e++qgd   ++++    e+fD il ++++          
       CTQ30266.1 245 ENGERILDLCAAPGGKTTHIL-EVAPQAQVMAVDIDEQRLSRVYDNLKRLGMK-AEVKQGDGR-FPEQwCGNEQFDRILLDAPCsatgvirrhp 335
                      56889****************.******************************8.*******76.57676777*********5555555556666 PP

  Methyltransf_31  85 ............naladpdkileeiervlkpggilliedprlla 116
                                   +   +++il+     lkpgg l+ +++++l 
       CTQ30266.1 336 dikwlrrdrdiaELAQLQAEILNATWTHLKPGGTLVYATCSILP 379
                      66666676666588889999********************9332 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.1e-09   1.7e-06      21     146 ..     246     388 ..     234     394 .. 0.69

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.1e-09
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS..HHH.TTEEEE..CS-CCCSSHHHHHCHCHHHSSEEEEEE--S-..........SS-CHHH CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm..apl.pgvtti..qgditdpetiekikealserkvdlvvsDgap..........dvsgvhd 104
                 +g++++Dl+aaPGg +  +l+   + ++v+avD+ +   + + ++++ +  ++ +++    +  +++++++++d ++ D             d++    
  CTQ30266.1 246 NGERILDLCAAPGGKTTHILEVAPQ-AQVMAVDIDEQrlSRVyDNLKRLgmKAEVKQG-DGRFPEQWCGNEQFDRILLDAPCsatgvirrhpDIK---- 338
                 8899******************765.********888443335666666444444333.3334567777889*******8773344344444443.... PP

                 HHHHHH..........CCCCHHHHCCHCCCCECCCEEEECCCH...CCCHHHHHH CS
        FtsJ 105 ldeylq..........sqLllaalelalkllkpggtfvlkifr...geeteallk 146
                                 +qL    l+ + + lkpggt+v  ++    +e+++++++
  CTQ30266.1 339 -----WlrrdrdiaelAQLQAEILNATWTHLKPGGTLVYATCSilpEENSQQIAA 388
                 .....244455554448999999999************77776664444445554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.7e-08     4e-05       1      70 [.     250     321 ..     250     337 .. 0.89
   2 ?   -1.5   0.0       2.9   4.3e+03      83      97 .]     354     368 ..     345     368 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.7e-08
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS..SSTTTEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlp..fedgsfDlvvs 70 
                      +Ldl++ +G  t ++++  ++a+v++vDi+e+ l ++  ++++ g+++e+ qgd +  +    +++fD +++
       CTQ30266.1 250 ILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLGMKAEVKQGDGRFPEqwCGNEQFDRILL 321
                      8***************99889*********************************965442258889999986 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
                      HHHHHHHHHHEEEEE CS
  Methyltransf_25  83 ekalkeiarvLkpgG 97 
                      +++l+  + +LkpgG
       CTQ30266.1 354 AEILNATWTHLKPGG 368
                      5688899999***99 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0     1e-07   0.00015      17     107 ..     232     325 ..     222     337 .. 0.87
   2 ?    0.8   0.0      0.21   3.1e+02     116     141 ..     351     376 ..     342     391 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1e-07
                 -HHHHHHHHHCHCCTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-STTTTST...TS-EEEEEE---S CS
         MTS  17 DkGsklLletlpkelsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleanklevevvasdvleeve...ekkfdlivsNPPf 107
                 D+ ++  +++l+ e  +++lDl++  G  ++++++  p+a+v +vd+d + l     nl++ ++++ev + d+    +   +++fd i+   P 
  CTQ30266.1 232 DASAQGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLGMKAEVKQGDGRFPEQwcgNEQFDRILLDAPC 325
                 66667778999999999*******************************************************9743332358999999887775 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHEEEEEEEEEEEET CS
         MTS 116 avaeeliaeAkeaLkegGeLliVanr 141
                 ++  e++++   +Lk+gG+L+  + +
  CTQ30266.1 351 QLQAEILNATWTHLKPGGTLVYATCS 376
                 67789999999********9876655 PP

>> Methyltransf_5  MraW methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   7.9e-07    0.0012      10      99 ..     236     322 ..     231     330 .. 0.87
   2 ?   -2.8   0.0       2.3   3.4e+03     215     237 ..     348     371 ..     347     376 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.9e-07
                     HHHHHHT---TT-EEEES--TTSHHHHHHHTT--TTEEEEEES-HHHHHHHTT.....---EEEEES-GGGHHHHHHHTTTT-EEEEEEE CS
  Methyltransf_5  10 qevvellepkedgvyiDaTlGaggHsealLeqlselrligidrDksalarakerLkefekrltlvkgnfkelkealaeanvtkvdgillD 99 
                     q ++++l+p+++   +D     gg ++++Le  ++ +++++d+D++ l r  ++Lk+   + ++ +g  ++ ++ + ++   ++d illD
      CTQ30266.1 236 QGCMRYLQPENGERILDLCAAPGGKTTHILEVAPQAQVMAVDIDEQRLSRVYDNLKRLGMKAEVKQGDGRFPEQWCGNE---QFDRILLD 322
                     679999****************************************************999888877766666666655...78888888 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.3
                     HHHHHH.HHHHHHHHHEEEEEEEE CS
  Methyltransf_5 215 Eleele.elleaalellakggrla 237
                     El++l+ e+l+a+ ++l++gg l+
      CTQ30266.1 348 ELAQLQaEILNATWTHLKPGGTLV 371
                     88888636899999*******985 PP

>> Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransferase RsmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.5e-06    0.0023       2      90 .]     146     236 ..     146     236 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.5e-06
                      -HHHHHHHHHHHGGGHHHHHHHHH-----EEE--TTS..TTHHHHHHH..-SS--B-TT-TTEEES---...TTSHHHHTTS-EE--TTTH CS
  Methyltr_RsmF_N   2 PeeFiekmkellgeeaeaflaaleeprkkglRvNtlKisveeleklse..efelepvpwceeGfyleeeerpgkhplheaGlyYiQEpSam 90 
                      P+  ++++++  +++++++++a ++ ++  lRvN +  s++e+ +l +  + e    p  ++++ l   +     p +++G++ +Q++Sa+
       CTQ30266.1 146 PKWLLKRLQQAWPQQWQEIVEANNQRPPMWLRVNRNHHSRDEWLALLNetGLEGFTHPDYPDAVRLATPAPVHALPGFAEGWVTVQDASAQ 236
                      5667899****************9999*****************99884545555678899********999*****************96 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.5e-06    0.0097       2      57 ..     248     305 ..     247     359 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.5e-06
  Methyltransf_15   2 rvilDlfsGaGGnviqfalv..fekviaieinleklacaqhNaevYgvsdkitlvlgd 57 
                      + ilDl++  GG++ ++ +v    +v+a++i++++l  ++ N +  g++ +++   g 
       CTQ30266.1 248 ERILDLCAAPGGKTTHILEVapQAQVMAVDIDEQRLSRVYDNLKRLGMKAEVKQGDGR 305
                      579*************999977779*******************99999988766665 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.6e-05     0.025      42     129 ..     247     331 ..     236     361 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.6e-05
                    C-EEEETT-...TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH. CS
  Cons_hypoth95  42 garvLDlfa...GsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakelli 129
                    g+r+LDl+a   G  +  lE +    +++++v+ d++ ++ + +nl++l++++   e+k+ + +  ++ +  +e+fd + lD P  +  +i
     CTQ30266.1 247 GERILDLCAapgGKTTHILEVAPQ--AQVMAVDIDEQRLSRVYDNLKRLGMKA---EVKQGDGRFPEQWC-GNEQFDRILLDAPCSATGVI 331
                    667888887333444455565543..5899********************874...66666665555554.568********998877654 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.18      40      98 ..     239     296 ..     232     312 .. 0.86
   2 ?   -2.2   0.0       1.4   2.1e+03     135     151 ..     356     372 ..     352     383 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                      HHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS CS
  Ubie_methyltran  40 eklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki 98 
                      ++   + +g+++lD+++  g  + ++++ v  + +v+ +Di+e+ L+   + lk+ g++
       CTQ30266.1 239 MRYLQPENGERILDLCAAPGGKTTHILE-VAPQAQVMAVDIDEQRLSRVYDNLKRLGMK 296
                      5666788999****************98.567889************999999998876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
                      HHHHHHHHEEEEEEEEE CS
  Ubie_methyltran 135 aLkeayrvlkpGGrlvv 151
                       L+  +  lkpGG+lv 
       CTQ30266.1 356 ILNATWTHLKPGGTLVY 372
                      68888999*****9985 PP

>> TAF6_C  TAF6 C-terminal HEAT repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0003      0.45      17      77 ..       2      59 ..       1      68 [. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0003
      TAF6_C 17 edhwaLRdfAAslLakilkkysssyktLkprvtrtllkvlldpkkslgt..lyGallglaalG 77
                +++++LR++AA+ ++++++k +s +     +v+  l++ + d++k l +   +G+l++l++l+
  CTQ30266.1  2 KKNINLRSLAAQAIEQVVEKGQSLS-----NVLPPLQQKVSDKDKALLQelCFGVLRTLSQLE 59
                57899***************77764.....555567777777777776655788888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3145.88
//
Query:       CTQ30267.1  [L=458]
Description: NAD-binding component of TrK potassium transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-57  192.5   3.4      7e-29  100.4   0.0    2.5  2  TrkA_N           TrkA-N domain
    8.3e-25   86.4   0.4    4.3e-11   42.5   0.2    3.0  2  TrkA_C           TrkA-C domain
    4.8e-11   43.1   3.4    0.00035   21.1   0.2    3.8  3  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
    7.1e-11   42.5   2.7    0.00023   21.6   0.1    3.3  3  NAD_binding_7    Putative NAD(P)-binding
    5.4e-10   39.5   1.6    1.7e-05   24.9   0.5    2.8  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    2.2e-09   37.7   1.2    0.00044   20.5   0.2    2.6  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
    3.6e-09   36.5   0.2     0.0022   17.7   0.0    3.1  3  ApbA             Ketopantoate reductase PanE/ApbA
    1.3e-06   28.4   1.9      0.033   14.1   0.3    2.4  2  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
    1.7e-06   28.0   4.1     0.0044   16.9   0.5    2.5  2  NAD_binding_10   NAD(P)H-binding
    4.9e-06   26.8   1.1      0.044   14.0   0.3    2.7  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
    0.00014   22.6   0.7     0.0091   16.8   0.1    2.8  2  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 
    0.00015   22.2   2.0       0.45   11.1   0.0    3.1  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
    0.00017   21.0   0.2      0.066   12.4   0.0    2.3  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
     0.0002   21.4   0.5       0.37   10.8   0.0    3.1  3  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
     0.0002   20.7   6.3       0.03   13.6   0.2    3.1  3  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
     0.0019   17.7   1.3        0.8    9.1   0.1    2.5  2  Epimerase        NAD dependent epimerase/dehydratase family
     0.0024   17.5   0.0       0.02   14.5   0.0    2.3  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
     0.0033   17.0   0.1        2.9    7.4   0.0    2.4  2  DUF1188          Protein of unknown function (DUF1188)
  ------ inclusion threshold ------
      0.011   15.9   0.1        5.9    7.2   0.0    2.9  2  NAD_binding_8    NAD(P)-binding Rossmann-like domain
      0.014   15.9   0.6        1.2    9.6   0.0    2.7  2  XdhC_C           XdhC Rossmann domain
      0.019   14.4   1.0       0.56    9.6   0.1    2.9  3  adh_short        short chain dehydrogenase
       0.03   13.9   0.2        1.4    8.5   0.0    2.3  2  DAO              FAD dependent oxidoreductase
       0.11   11.8   1.4        6.4    6.0   0.3    2.4  2  ThiF             ThiF family
       0.19   11.6   0.5         30    4.5   0.0    3.5  3  eIF-1a           Translation initiation factor 1A / IF-1


Domain annotation for each model (and alignments):
>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.0   9.4e-32     7e-29       1     109 [.       3     112 ..       3     125 .. 0.92
   2 !   92.0   1.1   3.8e-29   2.8e-26       1     116 []     235     350 ..     235     350 .. 0.94

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 9.4e-32
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTT.SEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESS CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeg.levvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqd 98 
                 iii+G+G+vG +lae+L  +++d++++d++ +r+++l++++ l+vv+g+++++ vL+eag+++ad+++a+t++de+n++a+++a +l+++++ iar++ 
  CTQ30267.1   3 IIILGAGQVGGTLAENLVGENNDITLVDTNGDRLRSLQDKFdLRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRA 101
                 89*****************7779******************999******************************************************* PP

                 GGGHHHHHHHT CS
      TrkA_N  99 pehaellkklg 109
                 p++++ ++kl 
  CTQ30267.1 102 PDYVRDAEKLF 112
                 ***77777654 PP

  == domain 2  score: 92.0 bits;  conditional E-value: 3.8e-29
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTT..SEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEES CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeg..levvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraq 97 
                 i+++G G++G  la++L+++++ v +i+++++r++el+e+   + v++gda+d+e+L+e +i+++d++ia+t+ddeani+ ++lak + ++kk+++ +q
  CTQ30267.1 235 IMLVGGGNIGAGLAHKLEKDYS-VKLIERNQQRAAELAEKLqhTIVFYGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRM-GAKKVMVLIQ 331
                 789****************995.*****************95444999*************************************975.5589****** PP

                 SGGGHHHHHHHTTSEEEEH CS
      TrkA_N  98 dpehaellkklgadvvisp 116
                 ++++++l++   +d +isp
  CTQ30267.1 332 RRAYVDLVQGSVIDIAISP 350
                 *****************98 PP

>> TrkA_C  TrkA-C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   1.9e-13   1.4e-10       3      69 ..     157     225 ..     155     226 .. 0.92
   2 !   42.5   0.2   5.7e-14   4.3e-11       8      69 ..     390     451 ..     387     452 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1.9e-13
                 EEEEE--GGGTTSBHHHHTHHHH....S-EEEEEE-T-EEES--TT-B--TT-EEEEEEEHHHHHHHHHHH CS
      TrkA_C   3 evtvpagsplvGktlkelnlrar....gvlvvairRggeliipsgdtvLeeGDvllvvgspsdlaelrell 69 
                  v+  +g plvG  l+   +r++    + +v+ai R++++i p g+t+ e+GD++++++ +++++++ ++l
  CTQ30267.1 157 VVKAYYGGPLVGNALST--MREHmphiDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHIRAVMSEL 225
                 57778899*********..99999999*******8888****************************99886 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 5.7e-14
                 --GGGTTSBHHHHTHHHHS-EEEEEE-T-EEES--TT-B--TT-EEEEEEEHHH.HHHHHHHH CS
      TrkA_C   8 agsplvGktlkelnlrargvlvvairRggeliipsgdtvLeeGDvllvvgspsd.laelrell 69 
                 + s++vG++++e++l+  g ++ a++Rg++++i++ ++++e GD+++ + +++  ++++++l+
  CTQ30267.1 390 STSRVVGRSIDEIKLPP-GTIIGAVVRGNDVMIANNNLRIEQGDHVIMFLTDKKfISDVERLF 451
                 689**************.*******************************99998888888887 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.2e-06   0.00089       1      52 [.       2      49 ..       2      70 .. 0.91
   2 ?   -1.0   0.0       3.6   2.7e+03      56      83 ..     200     226 ..     185     231 .. 0.79
   3 !   21.1   0.2   4.7e-07   0.00035       1      51 [.     234     279 ..     234     330 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.2e-06
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEEC CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvta 52
                   ki i+GaG++g +la++l+ ++   ++i+++ + n +++++l++++  +v +
     CTQ30267.1  2 KIIILGAGQVGGTLAENLVGEN---NDITLV-DTNGDRLRSLQDKFDLRVVQ 49
                   68899*****************...****88.*************9977765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3.6
                    HHHHHH-SEEEE-S-HHHHHHHHHHCGH CS
  F420_oxidored  56 eeaaeeadvvvlavkpedveevlselak 83 
                    ++ +e  d v++    +++ +v+sel +
     CTQ30267.1 200 STIVEAGDEVFFIAASQHIRAVMSEL-Q 226
                    56678888888888899999999999.3 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 4.7e-07
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEE CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvt 51 
                    +i ++G+Gn+g++la++l +     +++ ++ +rn+++a+elae+l+ ++ 
     CTQ30267.1 234 RIMLVGGGNIGAGLAHKLEKD----YSVKLI-ERNQQRAAELAEKLQHTIV 279
                    57889***********88776....9***88.**************94443 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.7e-05     0.013       9      80 ..       2      84 ..       1      96 [. 0.72
   2 !   21.6   0.1     3e-07   0.00023       8      83 ..     233     319 ..     228     322 .. 0.72
   3 ?    4.0   0.2     0.093        69      17      82 ..     320     385 ..     318     396 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.7e-05
  NAD_binding_7  9 kvlvvGgGevAarkvrklleagakvtvvapev..keele..elvklaeee........l.ekdlegadlviaatddrelneriae 80
                   k+++ G+G+v+ + +++l+ ++ ++t+v+ +    +  +  ++++l+  +        l e+  ++ad+++a+t+ +e n   ++
     CTQ30267.1  2 KIIILGAGQVGGTLAENLVGENNDITLVDTNGdrLR--SlqDKFDLRVVQghgshprvLrEAGADDADMLVAVTSSDETNMVACQ 84
                   689***************************963322..233333332111222222224467799************99977665 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 3e-07
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleagakvtvvapevkeele..elvk........laeeel..ekdlegadlviaatddrelneriaeaak 83 
                    k++++vGgG+++a  ++kl +    v+++  + ++++e  e+++        ++++el  e++++++dl ia+t+d+e n   a +ak
     CTQ30267.1 233 KRIMLVGGGNIGAGLAHKLEKD-YSVKLIERNQQRAAElaEKLQhtivfygdASDQELlaEEHIDQVDLFIAVTNDDEANIMSAMLAK 319
                    899***********99998776.9*******96444334333332332333334444456899***************9976666655 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.093
  NAD_binding_7  17 evAarkvrklleagakvtvvapevkeeleelvklaeeelekdlegadlviaatddrelneriaeaa 82 
                    +++a+kv  l++  a+v +v   v +++ +  +++ + l +++ +ad+v +   +r + e+i + a
     CTQ30267.1 320 RMGAKKVMVLIQRRAYVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVA 385
                    5799****************9997444334445555556677777888877777777777776655 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00013     0.098      14      87 ..       2      77 ..       1     122 [. 0.71
   2 !   24.9   0.5   2.2e-08   1.7e-05      12     103 ..     232     325 ..     221     349 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
                  EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-E..EEEGCGHH.HHHHT-SEEEE-SSSSS CS
  Shikimate_DH 14 kvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeie..alkleelk.ellaeadvvisatasee 87
                  k++++GaG+++  +a++L+ ++ + ++ +  + +r ++l ++++   ++    +   l+ +  ++ad++++ t+s e
    CTQ30267.1  2 KIIILGAGQVGGTLAENLVGENND-ITLVDTNGDRLRSLQDKFDLRVVQghGSHPRVLReAGADDADMLVAVTSSDE 77
                  899****************98877.****************995432220011222222022455666666666655 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 2.2e-08
                   T-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCG....HHHHHHT-SEEEE-SSSSS-SB-HHHHHCCHHH.S CS
  Shikimate_DH  12 ekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealklee....lkellaeadvvisataseepilekeeveealkkrk 103
                    k+++l+G G+++  +a++L  k +  v  + R+++ra+elae+l+++ + + + ++     +e+++++d+ i+ t+  e+ + ++++ + + ++k
    CTQ30267.1 232 YKRIMLVGGGNIGAGLAHKLE-KDYS-VKLIERNQQRAAELAEKLQHTIVFYGDASDqellAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKK 325
                   489***************997.5565.889***************99877777776633334689*************999999999887775543 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.9e-05     0.014       1      44 [.       3      43 ..       3      86 .. 0.81
   2 !   20.5   0.2   5.9e-07   0.00044       1      77 [.     235     305 ..     235     329 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.9e-05
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka 44
                     ++i+GaG vG  +ae l+ +++    it++d + ++l+ l +k 
       CTQ30267.1  3 IIILGAGQVGGTLAENLVGENND---ITLVDTNGDRLRSLQDKF 43
                     89*****************9985...**********99998664 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 5.9e-07
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-S CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnls 77 
                      ++++G+G++G ++a++l++   +   + +++r+++++++la+k   +  +    da+++e + ++++ + dl++ ++
       CTQ30267.1 235 IMLVGGGNIGAGLAHKLEKD--Y--SVKLIERNQQRAAELAEK--LQHTIVFYGDASDQELLAEEHIDQVDLFIAVT 305
                      789***************96..5..679********9999985..56678888999999998889999999999654 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.9e-06    0.0022       1      47 [.       3      51 ..       3      80 .. 0.83
   2 ?   -1.1   0.0       1.8   1.3e+03      18      43 ..     203     228 ..     199     232 .. 0.79
   3 !   15.2   0.1   1.7e-05     0.013       1      76 [.     235     305 ..     235     339 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.9e-06
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHH.HHHHCEEEEETT CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr.rlea.lkknGlrltseg 47
                i ilGaG +G++la +L   ++d+tl++ +  rl +   k +lr+ + +
  CTQ30267.1  3 IIILGAGQVGGTLAENLVGENNDITLVDTNGdRLRSlQDKFDLRVVQGH 51
                89***************99****************96667788887776 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.8
                 HHHTHCEEEE-SCHHHHHHHHHCEEE CS
        ApbA  18 akagadvtlilrsrrlealkknGlrl 43 
                  +ag +v +i+ s+++ a+ ++  rl
  CTQ30267.1 203 VEAGDEVFFIAASQHIRAVMSELQRL 228
                 5799***********99987766665 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 1.7e-05
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHH.HHHHCEEEEETT..CEEEEEECEEECCHSCCCCS-ESEEEE-S CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsr.rlea.lkknGlrltseg..geeilrppealsaeekselepidlvivtv 76 
                 i  +G G iG  la+kL ++ + v li r++ r+++  +k   ++ ++g   ++ l+ +e        ++ ++dl+i  +
  CTQ30267.1 235 IMLVGGGNIGAGLAHKL-EKDYSVKLIERNQqRAAElAEKLQHTIVFYGdaSDQELLAEE--------HIDQVDLFIAVT 305
                 6789*************.669**********99888455556666666632333333333........455556555444 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   5.6e-05     0.042       1      43 [.       2      44 ..       2      85 .. 0.86
   2 !   14.1   0.3   4.4e-05     0.033       2      63 ..     235     298 ..     234     328 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.6e-05
                EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHH CS
     3HCDH_N  1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalekie 43
                k+ ++GaG++G  +a+ ++ ++ +++lvd++ ++l++ ++k  
  CTQ30267.1  2 KIIILGAGQVGGTLAENLVGENNDITLVDTNGDRLRSLQDKFD 44
                5789*******************************99988876 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 4.4e-05
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH...HHHCCTTTTSS-HHHHCCC CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekiek...sleklvekgklkeeeveaa 63 
                 +  +G G +Gag+a+ + +++++V+l++++++++++ +ek+++    +  +  ++ l ee+++++
  CTQ30267.1 235 IMLVGGGNIGAGLAHKL-EKDYSVKLIERNQQRAAELAEKLQHtivFYGDASDQELLAEEHIDQV 298
                 5679**********975.889******************99993322334444444445555544 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   0.00018      0.13       3      73 ..       8      78 ..       7      99 .. 0.84
   2 !   16.9   0.5   5.9e-06    0.0044       3      93 ..     240     326 ..     239     367 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
                    TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHT.T-SEEEES---TCC CS
  NAD_binding_10  3 tGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealk.gadaVvsalggggk 73
                     G+vG  l++ l+ + + ++t++  n ++l +l+++  l+vv+g  + +  l+ea + +ad  v+ ++++++
      CTQ30267.1  8 AGQVGGTLAENLVGE-NNDITLVDTNGDRLRSLQDKFDLRVVQGHGSHPRVLREAGAdDADMLVAVTSSDET 78
                    7**************.58************************************986366776666665554 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 5.9e-06
                     TSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCT.TTCEEEE--TT-CCHHHHHHTT-SEEEES---TCCHHHHHHHHHHHH..HHCT--EE CS
  NAD_binding_10   3 tGkvGrllvkellargghevtalvRnpeklaeleae.eglevvegdvtdvedlaealkgadaVvsalggggkdeegaknivdaa..keagvkRf 93 
                      G++G  l+++l ++  ++v+++ Rn++++ael+++ +++ v+ gd++d+e lae   ++   ++a+ ++++     +ni+ a+  k+ g k++
      CTQ30267.1 240 GGNIGAGLAHKLEKD--YSVKLIERNQQRAAELAEKlQHTIVFYGDASDQELLAEEHIDQVDLFIAVTNDDE-----ANIMSAMlaKRMGAKKV 326
                     5999*****999776..9***************98745666778*******999866655556666665554.....33333331133344443 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00053       0.4       2      77 ..       3      86 ..       2      97 .. 0.82
   2 !   14.0   0.3   5.9e-05     0.044       2      87 ..     235     328 ..     234     340 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00053
                   EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT....EEE-SSHHHHHHHC....SEEEE-SSSHHHHHHHHHSHC CS
  NAD_binding_2  2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg....akaaesieelvasl....dvvitmvkagkavdeviegll 77
                   i ++G G+ G  +a+nl+ ++ ++++++ + +++++l ++     ++++ s   +++++      +++ v+++++++ v  +++
     CTQ30267.1  3 IIILGAGQVGGTLAENLVGENNDITLVDTNGDRLRSLQDKFdlrvVQGHGSHPRVLREAgaddADMLVAVTSSDETNMVACQVA 86
                   6789*****************************999999866777888888888888888876556677888888888877755 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 5.9e-05
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.....EEE-SSHHHHHHHC....SEEEE-SSSHHHHHHHHHSHCCC--TT-EEE CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.....akaaesieelvasl....dvvitmvkagkavdeviegllealkkgdili 87 
                    i ++G G++G+ +a +l +++y+v +++r+++++ el+++      + + +s +el+a+        ++ v+++++ + +   l++++ + ++++
     CTQ30267.1 235 IMLVGGGNIGAGLAHKL-EKDYSVKLIERNQQRAAELAEKLqhtivFYGDASDQELLAEEhidqVDLFIAVTNDDEANIMSAMLAKRMGAKKVMV 328
                    7799**********987.579*****************996678774444555555554446433357778888888888888999998888876 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.18   1.3e+02       1      73 [.       1      76 [.       1      89 [. 0.73
   2 !   16.8   0.1   1.2e-05    0.0091       2      87 ..     234     321 ..     233     328 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.18
                  EEEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESS...HHHHHTCT...TESEEEE-S-GG CS
  GFO_IDH_MocA  1 lrvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgveaysd...leelladp...eidavivatpng 73
                  +++ i GaG++g   +++l  ++++   + l+d++  r + + ++f++ +++    + ++l++    ++d+++ +t ++
    CTQ30267.1  1 MKIIILGAGQVGGTLAENLVGENNDI--T-LVDTNGDRLRSLQDKFDLRVVQGhgsHPRVLREAgadDADMLVAVTSSD 76
                  58999******999998888875444..4.67**********9999999888766655555544444677777666664 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.2e-05
                   EEEEETTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE..EESS..HHHHHTCTTESEE..EE-S-GGGHHHHHHHHHHTT- CS
  GFO_IDH_MocA   2 rvaiiGaGkigskhlrplnesqrleevvalldpdaeraeavaesfgve..aysd..leelladpeidav..ivatpngtheelakaaleagk 87 
                   r+ ++G+G+ig   + +l    ++   v l++++++ra ++ae++++   +y d   +ella+++id v  ++a+ n+  ++++ a+l++ +
    CTQ30267.1 234 RIMLVGGGNIGAGLAHKL----EKDYSVKLIERNQQRAAELAEKLQHTivFYGDasDQELLAEEHIDQVdlFIAVTNDDEANIMSAMLAKRM 321
                   7899******99888444....4448899*******************98887766789***9*9998755899999999999999998766 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0    0.0006      0.45       1      37 [.       2      38 ..       2      49 .. 0.83
   2 !    9.4   0.0     0.002       1.5       1      33 [.     234     265 ..     234     279 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0006
                EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrl 37
                k++++G+G +g  lA++l   ++++t+v+ +   lr 
  CTQ30267.1  2 KIIILGAGQVGGTLAENLVGENNDITLVDTNGDRLRS 38
                799*************************976555533 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.002
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSS CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdk 33 
                 +++ vGgG+ig  lA  l +   +V+++er+ +
  CTQ30267.1 234 RIMLVGGGNIGAGLAHKLEK-DYSVKLIERNQQ 265
                 6889*************976.446999999876 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0059       4.4       2      33 ..       2      33 ..       1      86 [. 0.84
   2 !   12.4   0.0   8.9e-05     0.066     135     178 ..     224     267 ..     194     279 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0059
                 SEEEE--SHHHHHHHHHHHHHTS-EEEEETTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaqagakvtlveleg 33
                 +++++G+G  G ++a++l   + ++tlv+ +g
   CTQ30267.1  2 KIIILGAGQVGGTLAENLVGENNDITLVDTNG 33
                 78999999999999999999999999997443 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8.9e-05
                  HHCCSS-T.....SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 135 alklkllp.....krivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  +l+    +     kri+ vGgG+iG  lA  l k  + v l+e++++  
   CTQ30267.1 224 ELQ----RlekpyKRIMLVGGGNIGAGLAHKLEKD-YSVKLIERNQQRA 267
                  334....3445599***********9999997765.7899999988766 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0051       3.8       1      81 [.       2      77 ..       2      99 .. 0.69
   2 ?   -1.6   0.0       3.1   2.3e+03      69      96 ..     205     232 ..     200     236 .. 0.77
   3 !   10.8   0.0   0.00049      0.37       2      65 ..     235     297 ..     234     330 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0051
                    -EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHH CS
  NAD_Gly3P_dh_N  1 kiavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqa 81
                    ki +lGaG+ G +lA  l  ++++++l   + + +++++++  + + ++g+  +  +  +    + +++ad++v v +s  
      CTQ30267.1  2 KIIILGAGQVGGTLAENLVGENNDITLVDTNGDRLRSLQDKF-DLRVVQGHGSHPRVLRE----AGADDADMLVAVTSSDE 77
                    799************999999999999999999888887653.44455555444444432....34455555555555555 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.1
                     T--EEEE---HHHHHHHHHHHCCC--TT CS
  NAD_Gly3P_dh_N  69 gadiivlvvPsqalrevlkklkgllkkk 96 
                       d +++   sq++r v+ +l+ l k+ 
      CTQ30267.1 205 AGDEVFFIAASQHIRAVMSELQRLEKPY 232
                     56778899999*******9999876655 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00049
                     EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHH CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvattdlae 65 
                     i ++G+G+ G  lA  l++   +v+l+ r+++ + e+ e+ +++  + g + +++l a++++++
      CTQ30267.1 235 IMLVGGGNIGAGLAHKLEKDY-SVKLIERNQQRAAELAEKLQHTIVFYGDASDQELLAEEHIDQ 297
                     7889*************9987.9*****************999999999999999988887765 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2     4e-05      0.03      30      96 ..       2      70 ..       1      82 [. 0.88
   2 !    7.5   0.7     0.003       2.3      30     103 ..     234     306 ..     228     350 .. 0.70
   3 ?    2.0   0.4      0.14   1.1e+02      43      95 ..     314     368 ..     309     373 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4e-05
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEEHCHHHHHHHHH.HHH-SEEE CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvevlksqeellaea.vkeadvvi 96
                 k++++G+G +G   +++ +g + ++t++D++ +rl+ l++ +  ++v+ + s+ + l+ea + +ad+++
   CTQ30267.1  2 KIIILGAGQVGGTLAENLVGENNDITLVDTNGDRLRSLQDkFDLRVVQGHGSHPRVLREAgADDADMLV 70
                 899************************************999999999988888888775356677766 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.003
                  EEEEESTSHHHHHHHHHHHHT..T-EEEEEESSHHHHHHHHH.TTTCECEE..HCHHHHHHHHHHHH-SEEEE---BTT CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakgl..gakVtvlDvrparleqles.lgakfvev..lksqeellaeavkeadvvigtvlipG 103
                  +++ +GgG  G      a++l  + +V++++ +++r+ +l + l++++v     + qe l +e++ ++d+ i    ++ 
   CTQ30267.1 234 RIMLVGGGNIGAG---LAHKLekDYSVKLIERNQQRAAELAEkLQHTIVFYgdASDQELLAEEHIDQVDLFIA---VTN 306
                  6788999999854...4444411668************9999787775555766777777889*******995...334 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.14
                  HHHHHHHTT-E.EEEEESSHHHHHHHHHTTTCECEE....HCHHHHHHHHHHHH-SEE CS
  AlaDh_PNT_C  43 Aiatakglgak.VtvlDvrparleqleslgakfvev....lksqeellaeavkeadvv 95 
                  ++  ak++gak V+vl   ++r+ +++ ++++++++    ++++ ++l ++v++ad+v
   CTQ30267.1 314 SAMLAKRMGAKkVMVL---IQRRAYVDLVQGSVIDIaispQQATISALLSHVRKADIV 368
                  6778888888625554...444445555555544444344777777888888888887 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0038       2.8       1      68 [.       3      69 ..       3      86 .. 0.75
   2 !    9.1   0.1    0.0011       0.8       3      79 ..     237     309 ..     235     342 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0038
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC...EEEE--TT-HHHHHHHHHHHT-SEE CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl...elveldltdrsalerlfkeeqpdav 68
                i+++Ga G++G  l+++l  ++ +++ +d + ++ +  +l+d+   ++v++   ++  l+++ ++ ++d+ 
  CTQ30267.1  3 IIILGA-GQVGGTLAENLVGENNDITLVDTNGDRLR--SLQDKfdlRVVQGHGSHPRVLREAGAD-DADML 69
                567776.*****************999999844433..333334568888888888888888776.55554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0011
                 EETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHH CS
   Epimerase   3 VtGatGfiGsalvkallekg.yevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihlAavggvaa 79 
                 ++G+ G iG+ l+++l++   +++i +++++ a+  ++l+++ + ++d  d++    l++ee++d v ++ av + ++
  CTQ30267.1 237 LVGG-GNIGAGLAHKLEKDYsVKLIERNQQRAAELAEKLQHTIVFYGDASDQE----LLAEEHIDQVDLFIAVTNDDE 309
                 5565.99**********9886778888888888888888888999***99987....555667777777755444443 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.7e-05      0.02       1      41 [.       1      41 [.       1     109 [. 0.88
   2 ?    0.2   0.0      0.66   4.9e+02       2      42 ..     234     273 ..     233     304 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.7e-05
                    SEEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCT CS
  UDPG_MGDP_dh_N  1 mkisviGlGYvGlvtaavlaeighevigvDideekvdklns 41
                    mki ++G+G vG++ a  l    +++++vD +  + ++l+ 
      CTQ30267.1  1 MKIIILGAGQVGGTLAENLVGENNDITLVDTNGDRLRSLQD 41
                    89********************************9999875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.66
                     EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTT CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeighevigvDideekvdklnsg 42 
                     +i  +G G +G+  a  l  +   v ++  ++++ ++l ++
      CTQ30267.1 234 RIMLVGGGNIGAGLAHKLE-KDYSVKLIERNQQRAAELAEK 273
                     8999*******99999885.557888888888888887654 PP

>> DUF1188  Protein of unknown function (DUF1188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0038       2.9      45      76 ..       2      34 ..       1      71 [. 0.86
   2 !    7.4   0.0    0.0039       2.9      28      79 ..     217     268 ..     205     305 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0038
                EEEEES-CCCHHHHHHHHCCC.EEEEEEESSGG CS
     DUF1188 45 nvlviGaYltGaaiakkLskk.eevtlvDieph 76
                +++++Ga  +G ++a++L  + +++tlvD +  
  CTQ30267.1  2 KIIILGAGQVGGTLAENLVGEnNDITLVDTNGD 34
                79*****************9999******9854 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0039
                 HHHHHHHHHTT--E..EEEEEES-CCCHHHHHHHHCCCEEEEEEESSGGGGG CS
     DUF1188  28 KaeavleyleeeeleeknvlviGaYltGaaiakkLskkeevtlvDiephlke 79 
                   +av++ l+  e   k+++++G    Ga++a+kL+k+  v l++ +++ + 
  CTQ30267.1 217 HIRAVMSELQRLEKPYKRIMLVGGGNIGAGLAHKLEKDYSVKLIERNQQRAA 268
                 455666666666667899**************************98876544 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.026        20       1      28 [.       5      32 ..       5      43 .. 0.93
   2 ?    7.2   0.0     0.008       5.9       2      29 ..     238     264 ..     237     272 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.026
                   EE--SHHHHHHHHHHHCCTEEEEEE-SS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekr 28
                   I+GaG  G ++A  L  ++ d++l++++
     CTQ30267.1  5 ILGAGQVGGTLAENLVGENNDITLVDTN 32
                   89***********************986 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.008
                    E--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8   2 vGaGlsGlvaAylLakagfdvlllekrd 29 
                    vG+G  G+ +A+ L k+ ++v l+e+++
     CTQ30267.1 238 VGGGNIGAGLAHKLEKD-YSVKLIERNQ 264
                    9***************6.*******976 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0016       1.2       2     104 ..       4     102 ..       3     103 .. 0.83
   2 ?    3.9   0.2     0.097        72       2      57 ..     236     311 ..     235     413 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0016
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE-EEEE--S-HHHHHHHHHHHSSS--SEEEESS-HHHHHHHCTTS.--........T CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefatkerfpeadetavvvlthdhklDaealeaalrkkaayigllGSrkkaarrlerlraagl.seeela 99 
                 +i+Gag+v+  la+ +   + ++t+vd++ +     r+ + ++++ + + ++h    ++l++a +++a ++ ++ S   ++ +  +++ + + +++++a
  CTQ30267.1   4 IILGAGQVGGTLAENLVGENNDITLVDTNGD-----RLRSLQDKFDLRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFnTPNRIA 97 
                 89**************************996.....444444678888888888999999999988899888888888888888888777554788899 PP

                 TEESS CS
      XdhC_C 100 rlhaP 104
                 r++aP
  CTQ30267.1  98 RIRAP 102
                 99888 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.097
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG-GGG-TT-SE.......................-EEEE--S-HHHH CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefatkerfpeade.......................tavvvlthdhklD 57 
                 +++G+g++++ la+ +++ +++v +++ +++ a  ++++e+ +                       + ++++t+d +  
  CTQ30267.1 236 MLVGGGNIGAGLAHKLEK-DYSVKLIERNQQRA--AELAEKLQhtivfygdasdqellaeehidqvDLFIAVTNDDEAN 311
                 678999999999988875.89999999888633..33332211233333333333333334445455555555554333 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.13        96       3      43 ..       3      42 ..       1      51 [. 0.87
   2 ?    9.6   0.1   0.00075      0.56       4      62 ..     236     288 ..     233     303 .. 0.79
   3 ?   -3.6   0.0       8.5   6.3e+03     121     137 ..     356     373 ..     345     380 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.13
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevake 43
                +++ Ga++ +G  +a++l+ e+ ++++vd + ++l+ + ++
  CTQ30267.1  3 IIILGAGQ-VGGTLAENLVGENNDITLVDTNGDRLRSLQDK 42
                78888886.899*********************99887665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00075
                 EEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHH CS
   adh_short   4 lvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdre 62 
                 + +G++  IG  +a++l +++++v +++r++++++e+a++l+      +++ +D +d+e
  CTQ30267.1 236 MLVGGG-NIGAGLAHKL-EKDYSVKLIERNQQRAAELAEKLQH----TIVFYGDASDQE 288
                 444544.5999999998.566********************97....577777777665 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 8.5
                 HHHH.HCTTEEEEEEEEG CS
   adh_short 121 paml.kqssGrIvnvsSv 137
                  a+l   ++++Iv vsS 
  CTQ30267.1 356 SALLsHVRKADIVGVSSL 373
                 443336688999999996 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.07        52       1      29 [.       2      32 ..       2      36 .. 0.87
   2 ?    8.5   0.0    0.0018       1.4       4      31 ..     237     265 ..     234     302 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.07
                EEEEECTSHHHHHHHHHHHHTT..EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekg 29
                +++i G+G +G + A  L  ++  +tl++ +
  CTQ30267.1  2 KIIILGAGQVGGTLAENLVGENndITLVDTN 32
                59****************966459****976 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0018
                 EECTSHHHHHHHHHHHHTT..EEEEESSSS CS
         DAO   4 iiGGGiiGlstAyeLarrg..Vtllekgdi 31 
                  +GGG iG++ A+ L  +   V l+e++ +
  CTQ30267.1 237 LVGGGNIGAGLAHKLE-KDysVKLIERNQQ 265
                 59*************5.5558******944 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.3    0.0086       6.4      20      49 ..       2      30 ..       1      33 [. 0.80
   2 ?    4.2   0.0     0.031        23      12      37 ..     224     251 ..     213     253 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0086
                EEEEE--SHHHHHHHHHHHHHTTTEEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 20 kvllvGaGglGsellknLalsGvgkltlvD 49
                k+ ++GaG +G  l++nL++     +tlvD
  CTQ30267.1  2 KIIILGAGQVGGTLAENLVG-ENNDITLVD 30
                89****************85.335666666 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.031
                 HHHHHHT..SEEEEE--SHHHHHHHHHH CS
                 xxxxxxx..xxxxxxxxxxxxxxxxxxx RF
        ThiF  12 gqekLrd..skvllvGaGglGsellknL 37 
                  +++L++  ++++lvG G +G  l++ L
  CTQ30267.1 224 ELQRLEKpyKRIMLVGGGNIGAGLAHKL 251
                 5678888889**************9987 PP

>> eIF-1a  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.039        30      15      39 ..     254     278 ..     250     281 .. 0.92
   2 ?    0.8   0.0      0.58   4.3e+02      36      62 ..     333     368 ..     304     369 .. 0.82
   3 ?    1.4   0.0      0.38   2.9e+02      37      52 ..     424     439 ..     394     443 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.039
                 EEEEEE.SSSSBEEEEE-HHHHCT- CS
      eIF-1a  15 lfrVelpdngkevlaeipgkfRnki 39 
                  ++V+l + ++++ ae++ k+ ++i
  CTQ30267.1 254 DYSVKLIERNQQRAAELAEKLQHTI 278
                 599****99************9998 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.58
                 HCT----TT-EEEEEE-TT-TT.........EEEEE CS
      eIF-1a  36 RnkiwikrGdyVlVelspydlt.........kGrIv 62 
                 R ++   +G ++ + +sp + t         k++Iv
  CTQ30267.1 333 RAYVDLVQGSVIDIAISPQQATisallshvrKADIV 368
                 456778899999999999999999999999999997 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.38
                 CT----TT-EEEEEE- CS
      eIF-1a  37 nkiwikrGdyVlVels 52 
                 n+ +i +Gd V+  l+
  CTQ30267.1 424 NNLRIEQGDHVIMFLT 439
                 899********98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3385.85
//
Query:       CTQ30268.1  [L=137]
Description: mechanosensitive channel [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-46  157.8   1.2    1.5e-46  157.7   1.2    1.0  1  MscL      Large-conductance mechanosensitive channel, MscL
     0.0059   16.8   0.3     0.0096   16.1   0.0    1.5  2  UPF0239   Uncharacterised protein family (UPF0239)
  ------ inclusion threshold ------
      0.093   12.6   1.2        2.5    8.0   0.3    2.0  2  DUF3487   Protein of unknown function (DUF3487)


Domain annotation for each model (and alignments):
>> MscL  Large-conductance mechanosensitive channel, MscL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.7   1.2   2.4e-50   1.5e-46       1     121 []       3     131 ..       3     131 .. 0.91

  Alignments for each domain:
  == domain 1  score: 157.7 bits;  conditional E-value: 2.4e-50
        MscL   1 llkeFkefilrGnvidLAvgviiGaaftkiVtslvkdiimpliglllggvdfselkikl.....kaeaavlkygafiqavinFliiafviFlivkaink 94 
                 +lkeF+ef++rGnv+dLAvgviiGaaf+kiV+slv+diimp++gll+gg+df++++++l     + +a+v++yg fiq+v++F+i+af+iF+ +k++nk
  CTQ30268.1   3 FLKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGIDFKQFAVTLrdaqgDVPAVVMHYGVFIQNVFDFIIVAFAIFMAIKLMNK 101
                 79*****************************************************9999999998899******************************* PP

        MscL  95 ..kkkeeeeeeeaee.keeellteirdllk 121
                   +kkee+ ++++++ kee ll+eirdllk
  CTQ30268.1 102 lnRKKEEAPAAPPAPsKEEVLLSEIRDLLK 131
                 974444444444443489999*******97 PP

>> UPF0239  Uncharacterised protein family (UPF0239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       2.1   1.3e+04      24      34 ..      22      32 ..      19      43 .. 0.55
   2 !   16.1   0.0   1.6e-06    0.0096      16      56 ..      68     108 ..      58     127 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.1
     UPF0239 24 GLflGAifqlv 34
                G  +GA f  +
  CTQ30268.1 22 GVIIGAAFGKI 32
                66778777433 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.6e-06
     UPF0239  16 flelllrYGLflGAifqlvCilAiillpsskseesveeeae 56 
                 + +++++YG f+  +f ++ ++ +i+++ +  ++ ++++ e
  CTQ30268.1  68 VPAVVMHYGVFIQNVFDFIIVAFAIFMAIKLMNKLNRKKEE 108
                 55789********************9998877776555443 PP

>> DUF3487  Protein of unknown function (DUF3487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.3   0.00042       2.5      24      70 ..       6      52 ..       3      62 .. 0.86
   2 ?    3.6   0.0    0.0097        58      45      79 ..      71     106 ..      64     109 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00042
     DUF3487 24 Ellvlaglglvvglvlglllallvgslaliptialllvllvvlvggk 70
                E+  +a+ g vv l++g+++ +++g+++  + + ++++ l++l+gg 
  CTQ30268.1  6 EFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPPLGLLIGGI 52
                77778889999999999999999999999999999999999999985 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0097
     DUF3487  45 llvgslaliptia.lllvllvvlvggkllarlKRgk 79 
                 +++++ ++i  +  +++v++ ++++ kl+++l R k
  CTQ30268.1  71 VVMHYGVFIQNVFdFIIVAFAIFMAIKLMNKLNRKK 106
                 455556666666557788888888889999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1072.84
//
Query:       CTQ30269.1  [L=92]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-27   92.3   2.3    1.2e-26   91.9   2.3    1.2  1  ArfA      Alternative ribosome-rescue factor A


Domain annotation for each model (and alignments):
>> ArfA  Alternative ribosome-rescue factor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   2.3   6.9e-31   1.2e-26       2      44 .]       4      46 ..       3      46 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 6.9e-31
        ArfA  2 yehgrGkIkDNalkAlvtskLFrqrvekakKGKGSYqRkakhk 44
                y+h++G+IkDNa++Al++++LFrqrvek+kKGKGSYqRk+kh+
  CTQ30269.1  4 YQHTKGQIKDNAIEALLHDPLFRQRVEKNKKGKGSYQRKDKHA 46
                9****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 733.88
//
Query:       CTQ30270.1  [L=141]
Description: DNA-binding transcriptional activator in response to Zn(II) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-21   74.8   0.3    4.3e-21   74.8   0.3    1.5  2  MerR_1         MerR HTH family regulatory protein
    2.3e-19   69.7   5.9    3.6e-19   69.0   5.9    1.3  1  MerR-DNA-bind  MerR, DNA binding
    9.7e-13   47.7   0.0    1.9e-12   46.7   0.0    1.5  1  MerR           MerR family regulatory protein


Domain annotation for each model (and alignments):
>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.3   7.2e-25   4.3e-21       1      67 [.       2      69 ..       2      70 .. 0.97
   2 ?   -3.3   0.0       1.6   9.8e+03      43      49 ..      97     103 ..      94     109 .. 0.47

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 7.2e-25
                EEHHHHHHHHTS-HHHHHHHHHHTT-S-EE.-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XXX CS
      MerR_1  1 ysigevakilgvtthtlrywekegllkpkr.teggrryYtdedierLklikyLlkrGltlkgikklln 67
                y+ige+ak++ vt++t+ry+ek+  +   + tegg r+Y+d+d++rL++i+y ++ G+tl++i++ll+
  CTQ30270.1  2 YRIGELAKLADVTPDTIRYYEKQQMMDHDIrTEGGFRLYSDNDLQRLRFIRYARQLGFTLEAIRELLS 69
                9************************999988**********************************995 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.6
                 HHHHHHH CS
      MerR_1  43 ierLkli 49 
                 i++L+++
  CTQ30270.1  97 IKELQTM 103
                 3333333 PP

>> MerR-DNA-bind  MerR, DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   5.9   6.1e-23   3.6e-19       1      65 []      45     110 ..      45     110 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 6.1e-23
                    HHHHHHHHHHHHTT--HHHHHHHHHHHHS.TTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MerR-DNA-bind   1 leRLkfIrrarrlGFsLdeIrelLalydd.rappcqdvrallarklaeleeriaeLqalraeLaal 65 
                    l+RL+fIr ar+lGF+L+ IrelL+++ d ++++cq+ + +++++l e+e+ri+eLq +r+ L++l
     CTQ30270.1  45 LQRLRFIRYARQLGFTLEAIRELLSIRIDpEHHTCQESKGIVQARLSEVEARIKELQTMRRSLQRL 110
                    68***************************88********************************986 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   3.2e-16   1.9e-12       1      38 []       3      40 ..       3      40 .. 0.99

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 3.2e-16
                EHHHHHHHHTTTHHHHHHHHHTTSSTSEEETTTSSEEE CS
        MerR  1 tIgevAeltGvsprtLRyYEreGLipppeRtegGyRlY 38
                +Ige+A+l++v+p+t+RyYE++    + +RtegG RlY
  CTQ30270.1  3 RIGELAKLADVTPDTIRYYEKQQMMDHDIRTEGGFRLY 40
                7************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1109.61
//
Query:       CTQ30271.1  [L=122]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-24   85.1   0.0    4.1e-24   84.5   0.0    1.3  1  DUF1992   Domain of unknown function (DUF1992)


Domain annotation for each model (and alignments):
>> DUF1992  Domain of unknown function (DUF1992)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   2.3e-28   4.1e-24       1      69 [.       7      73 ..       7      74 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.5 bits;  conditional E-value: 2.3e-28
     DUF1992  1 laEerIreAierGeFdnlpgrGKPLplddendplvpeeerlanrilknagvlPpeielrkeieelkell 69
                +aE++I +A+ +GeFdnlpg G PL ldd  d++vp e+r+++r+lknag+lPpe+e rke+ +l++ll
  CTQ30271.1  7 WAERHILDAQTKGEFDNLPGSGEPLTLDD--DSHVPAELRAGYRLLKNAGCLPPELEQRKEALALADLL 73
                9**************************99..*******************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       303  (0.0169); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1083.77
//
Query:       CTQ30272.1  [L=128]
Description: 50S ribosomal protein L17 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-34  119.1   0.0    1.4e-34  118.8   0.0    1.1  1  Ribosomal_L17  Ribosomal protein L17


Domain annotation for each model (and alignments):
>> Ribosomal_L17  Ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.8   0.0     8e-39   1.4e-34       1      94 []      20     116 ..      20     116 .. 0.97

  Alignments for each domain:
  == domain 1  score: 118.8 bits;  conditional E-value: 8e-39
                    HHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHS-...HHHHHHHTHHHHTSS--S--EEEEEEEE-TTTH-EEEEEEE CS
  Ribosomal_L17   1 LlrnlvtsLleherIetTlakAkelrklaeklitlakkgelaarrkalayla...lvkkLfeelapryadrngGYtRilklgprrgDaaemailel 93 
                    ++rn++ sL++he I+tTl+kAkelr+++e litlak++++a+rr a+a  +   +v+kLf+el pr+a+r gGYtRilk+g r gD+a+ma++el
     CTQ30272.1  20 MFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRdneIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIEL 115
                    89*********************************************999955669**************************************** PP

                    - CS
  Ribosomal_L17  94 V 94 
                    V
     CTQ30272.1 116 V 116
                    8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1004.25
//
Query:       CTQ30273.1  [L=329]
Description: RNA polymerase, alpha subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-24   84.5   0.0    4.1e-24   83.8   0.0    1.4  1  RNA_pol_L      RNA polymerase Rpb3/Rpb11 dimerisation domain
    4.5e-24   84.0   0.1      8e-24   83.2   0.1    1.4  1  RNA_pol_A_CTD  Bacterial RNA polymerase, alpha chain C termin
    8.2e-24   84.1   0.2    1.9e-23   83.0   0.1    1.7  1  RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
    0.00012   21.8   0.0       0.61    9.9   0.0    2.6  2  RNA_pol_L_2    RNA polymerase Rpb3/Rpb11 dimerisation domain
  ------ inclusion threshold ------
       0.27   10.0   0.1       0.41    9.4   0.1    1.2  1  YjbH           Exopolysaccharide biosynthesis protein YbjH


Domain annotation for each model (and alignments):
>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   1.2e-27   4.1e-24       1      69 []      29     228 ..      29     228 .. 0.87

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 1.2e-27
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................................... RF
   RNA_pol_L   1 efllrgvdhtlgNaLRrillsevpgvaiea..................................................................... 30 
                 e+l+rg++htlgNaLRrills++pg+a+++                                                                     
  CTQ30273.1  29 EPLERGFGHTLGNALRRILLSSMPGCAVTEveidgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkpq 127
                 79*******************************************************************999999999999999999888888888888 PP

                 ...................................................xxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  31 ...................................................pvvkvn...........tdkdklilevetdgslkPeealkeAlkiLke 67 
                                                                    pv++++           td dkl++e et+g+++Peea+++A++iL e
  CTQ30273.1 128 hvichltdenaaismrikvqrgrgyvpasarihseederpigrllvdacysPVERIAynveaarveqrTDLDKLVIEMETNGTIDPEEAIRRAATILAE 226
                 88888888888888888888888888888888777777777777777777766444455555666677*****************************99 PP

                 xx RF
   RNA_pol_L  68 kl 69 
                 +l
  CTQ30273.1 227 QL 228
                 86 PP

>> RNA_pol_A_CTD  Bacterial RNA polymerase, alpha chain C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.1   2.2e-27     8e-24       3      66 ..     245     308 ..     243     309 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 2.2e-27
                    ..XXXXXXX--BHHHHT--HHHHHHHHHTT--BHHHHHHS-HHHHTTSSS-SSHHHHHHHHHHH CS
  RNA_pol_A_CTD   3 eeeeelkklsisIeeLeLSvRslNcLkragiktvgeLvklseeeLlkikNlGkKSleEIkekLe 66 
                    e++e  + l +++++LeL+vRs NcLk++ i+++g+Lv+++e eLlk++NlGkKSl+EIk+ L+
     CTQ30273.1 245 EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLA 308
                    55666788999**************************************************996 PP

>> RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.1   5.2e-27   1.9e-23       2     110 ..      60     156 ..      58     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 5.2e-27
                    EEEECTSSS.HHHHHCHHHCSTCBSSCHHHHHHHHCTT-ETSSSSTTCSEEEEEEEEESSECEEGGGCBESSSSCEESSTTSEEEEEETT-E.EEE CS
  RNA_pol_A_bac   2 eieentsvlqDEvvaHrlgliplvsedvleillnlkelveeeeegeeeksvelkLnvkgpgevtagdlkledadveivnpdilIakLrkgqe.lel 96 
                    ei  ++       v+H++++ ++v+ed+leillnlk+l+    + + +++v+l+Ln++g g vta+d+++ d dveiv+p+++I++L++++  +++
     CTQ30273.1  60 EI--DG-------VLHEYSTKEGVQEDILEILLNLKGLAV---RVQGKDEVILTLNKSGIGPVTAADITH-DGDVEIVKPQHVICHLTDENAaISM 142
                    55..66.......9************************85...45555556*******************.****************988766*** PP

                    EEEEEEESSEECTT CS
  RNA_pol_A_bac  97 eakvkkGiGkehak 110
                    ++kv++G+G+++a+
     CTQ30273.1 143 RIKVQRGRGYVPAS 156
                    ***********996 PP

>> RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00031       1.1      10      24 ..      36      50 ..      33      62 .. 0.83
   2 !    9.9   0.0   0.00017      0.61      40      72 ..     199     231 ..     180     233 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00031
                 -HHHHHHHHHHHTTS CS
  RNA_pol_L_2 10 DhTLgnlLrhlllkn 24
                  hTLgn+Lr +ll+ 
   CTQ30273.1 36 GHTLGNALRRILLSS 50
                 6**********9964 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00017
                  SEEEEEEEESTSS-HHHHHHHHHHHHHHHHHHH CS
  RNA_pol_L_2  40 pkmnlriqtkssnnpleaLkkalkdlldicdel 72 
                  +k+ + ++t+++++p ea+++a++ l ++++ +
   CTQ30273.1 199 DKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 231
                  68999*********************9999876 PP

>> YjbH  Exopolysaccharide biosynthesis protein YbjH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00011      0.41     282     337 ..     183     238 ..     139     250 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00011
        YjbH 282 Lakeaglelekialdgdtltvelentryrdeaeaveraarvlanelpasvetlkvv 337
                 +a++ + +  + ++d d+l++e+e + + d +ea+ raa++la++l a v+  +v 
  CTQ30273.1 183 IAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVR 238
                 45554444455556667*****************************9988866665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2413.59
//
Query:       CTQ30274.1  [L=206]
Description: 30S ribosomal protein S4 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-32  112.0   2.3    1.9e-32  112.0   2.3    1.6  2  Ribosomal_S4  Ribosomal protein S4/S9 N-terminal domain
    5.9e-19   67.5   0.5    1.2e-18   66.5   0.5    1.6  1  S4            S4 domain
  ------ inclusion threshold ------
      0.011   15.5   0.4      0.023   14.5   0.4    1.5  1  S4_2          S4 domain
      0.042   12.8   0.1      0.059   12.3   0.1    1.2  1  E1_dh         Dehydrogenase E1 component
      0.095   13.0   0.1       0.18   12.0   0.1    1.4  1  SAM_DrpA      DNA processing protein A sterile alpha motif do
      0.096   12.5   0.1       0.18   11.6   0.1    1.4  1  TyrRSs_C      Tyrosyl-tRNA synthetase C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S4  Ribosomal protein S4/S9 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   2.3   6.3e-36   1.9e-32       1      83 []       3      95 ..       3      95 .. 0.99
   2 ?   -2.3   0.0         3     9e+03      53      71 ..     135     153 ..     132     163 .. 0.68

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 6.3e-36
                  TT-S-CHHHHCHCTS-STSSS..........S-S-SSTTTTS-----CHCHHHHHHHHHHHHHT-SHHHHHHHHHHHHHCCSHHHHHHHHHHH CS
  Ribosomal_S4  1 rykgpkckllRrvgfklflkg..........reyppGqhgkrrkklseYgkqlrekqklkrrYgllekqfrryfkearrirGktgenLlqlLE 83
                  ry gpk kl+Rr+g++lflk+           e++pGqhg+r+ +ls+Yg+qlrekqk++r+Yg+le+qfr+y+kea+r++G+tgenLl+lLE
    CTQ30274.1  3 RYLGPKLKLSRREGTDLFLKSgvraidtkckIEQAPGQHGARKPRLSDYGVQLREKQKVRRMYGVLERQFRNYYKEAARLKGNTGENLLALLE 95
                  89****************************99************************************************************9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3
                   HT-SHHHHHHHHHHHHHCC CS
  Ribosomal_S4  53 Ygllekqfrryfkearrir 71 
                   Y ++ +++  + ++a++ +
    CTQ30274.1 135 YQVKANDVVSIREKAKKQS 153
                   6777777777777776654 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.5     4e-22   1.2e-18       2      48 .]      97     143 ..      96     143 .. 0.99

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 4e-22
                 EHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4   2 RLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48 
                 RLd+v++r+g++ +r eArql++h+ + VNG+vv+++sy+Vk++Dv+
  CTQ30274.1  97 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVKANDVV 143
                 9********************************************98 PP

>> S4_2  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.4   7.6e-06     0.023      24      60 ..     112     148 ..     105     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.6e-06
        S4_2  24 geaKafiaegeVkvNGevetrRgkKlraGdvVeidge 60 
                 +ea+++++ +++ vNG v +    ++ a+dvV+i ++
  CTQ30274.1 112 AEARQLVSHKAIMVNGRVVNIASYQVKANDVVSIREK 148
                 69*******************************9654 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     2e-05     0.059     168     223 ..     113     174 ..     101     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2e-05
                 EHHHH-S---GGG..TTTTS-EEEEETTSHHHHHHH......HHHHHHHHHTTT--EEEEEE CS
       E1_dh 168 eaekasaskeladrargvgipglrVdgnDplavyeA......vkfAaeraregkgpllielv 223
                 ea++  + k ++  +r+v+i++ +V +nD++ ++e       vk+A e a++ ++p+ +e+ 
  CTQ30274.1 113 EARQLVSHKAIMVNGRVVNIASYQVKANDVVSIREKakkqsrVKAALELAEQREKPTWLEVD 174
                 33444567788899*******************86423333378999999999999999975 PP

>> SAM_DrpA  DNA processing protein A sterile alpha motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   6.2e-05      0.18      11      49 ..     121     160 ..     120     166 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.2e-05
    SAM_DrpA  11 kAGLtNlnilnildYqekneksLsLrdmav.vSkcknpal 49 
                 kA + N  + ni +Yq k +  +s+r+ a+ +S++k+++ 
  CTQ30274.1 121 KAIMVNGRVVNIASYQVKANDVVSIREKAKkQSRVKAALE 160
                 67899**********************9953899998765 PP

>> TyrRSs_C  Tyrosyl-tRNA synthetase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     6e-05      0.18      20      55 ..      95     130 ..      90     159 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6e-05
                 S-SHHHHHHHTTS-STHHHHHHHHHHT-EEEEE--S CS
    TyrRSs_C  20 nksiariLyaaGLasskseghrliakkgayvgsrpg 55 
                 +  +  ++y  G+ ++++e+++l+++k++ v +r  
  CTQ30274.1  95 EGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVV 130
                 567889*************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1581.04
//
Query:       CTQ30275.1  [L=129]
Description: 30S ribosomal protein S11 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-54  183.2   0.8    1.7e-54  182.9   0.8    1.1  1  Ribosomal_S11  Ribosomal protein S11


Domain annotation for each model (and alignments):
>> Ribosomal_S11  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.9   0.8   9.5e-59   1.7e-54       1     110 []      19     128 ..      19     128 .. 1.00

  Alignments for each domain:
  == domain 1  score: 182.9 bits;  conditional E-value: 9.5e-59
  Ribosomal_S11   1 GvahiqasfnntiititdlkGaevlvksaGglgvkasrkssPyaaqlaaekaaekvldkGikavevkvkgpGpGreaalralaraGlkigriedvt 96 
                    Gvahi+asfnnti+titd++G+++ +++aGg+g+++srks+P+aaq+aae++ae+v+++Gik++ev+vkgpGpGre+++ral++aG++i++i+dvt
     CTQ30275.1  19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCAEAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVT 114
                    9*********************************************************************************************** PP

  Ribosomal_S11  97 PiPhdgirrpkkrr 110
                    PiPh+g+r+pkkrr
     CTQ30275.1 115 PIPHNGCRPPKKRR 128
                    *************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 924.99
//
Query:       CTQ30276.1  [L=118]
Description: 30S ribosomal protein S13 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-34  119.2   6.8    9.4e-33  113.3   6.8    2.0  1  Ribosomal_S13  Ribosomal protein S13/S18
     0.0049   15.7   0.0     0.0051   15.6   0.0    1.1  1  FbpA           Fibronectin-binding protein A N-terminus (FbpA


Domain annotation for each model (and alignments):
>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   6.8     1e-36   9.4e-33       1     128 []       3     108 ..       3     108 .. 0.99

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 1e-36
  Ribosomal_S13   1 RilgtdidgkkkveialtaikGiGrrkakiilkkadvdedkrigelteeeiekieeivenkaqykipnwinrqkdikdGkdshvvendlrrklred 96 
                    Ri+g++i+++k+ +ialtai GiG++++k+i++++++ e+++i+el+ee+i+ ++e v +                      +vve+dlrr++  +
     CTQ30276.1   3 RIAGINIPDHKHTVIALTAIFGIGKTRSKAICAETGIAENVKISELSEEQIDILREAVGK----------------------FVVEGDLRREITLS 76 
                    9***********************************************************......................9************* PP

  Ribosomal_S13  97 ieRlkkirsyrGlRHkrGlkvRGQrTkttgRt 128
                    i+Rl+++++yrGlRH+rGl+vRGQrTkt++Rt
     CTQ30276.1  77 IKRLMDLGCYRGLRHRRGLPVRGQRTKTNART 108
                    *******************************8 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.7e-07    0.0051     192     239 ..      18      64 ..       5      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.7e-07
                 HHHHHBTTXXHHHHHHHHTTXSSSH...............HHHHHHHH CS
        FbpA 192 aLvkafqGlspllaeelleragldketsakelseedlerlyealqell 239
                 aL   f G++++ ++ +++++g++++ +++elsee+++ l+ea+ +++
  CTQ30276.1  18 ALTAIF-GIGKTRSKAICAETGIAENVKISELSEEQIDILREAVGKFV 64 
                 455555.**********************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 876.26
//
Query:       CTQ30277.1  [L=443]
Description: preprotein translocase membrane subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.4e-118  394.0  18.6   5.5e-118  393.7  18.6    1.1  1  SecY      SecY translocase
  ------ inclusion threshold ------
       0.23   11.8   0.4        0.9    9.9   0.4    2.0  1  Orf78     Orf78 (ac78)


Domain annotation for each model (and alignments):
>> SecY  SecY translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.7  18.6  6.2e-122  5.5e-118       1     306 []      76     417 ..      76     417 .. 0.94

  Alignments for each domain:
  == domain 1  score: 393.7 bits;  conditional E-value: 6.2e-122
                 BTTSSTCHHHHHHHHHHHHHHHHSSSSSSTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC..............HH.HHHHHHHHHHHHHHHHH CS
        SecY   1 sifaLGImPyitasIilqLltvvipkleelkkegeegrkkinqitryltvvlalvqalgialslg..............lalllivlqltagtvllmwL 85 
                 sifaLGImPyi+asIi+qLltvv+ +l elkkege+gr+ki+q+try t+vla++q++gia++l               ++++++v++l++gt++lmwL
  CTQ30277.1  76 SIFALGIMPYISASIIVQLLTVVYQPLAELKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPnmpgmqglvinpgfAFYFTAVVSLVTGTMFLMWL 174
                 8**********************************************************99776699************779***************** PP

                 HHHHHHHSSTTHHHHHHHHHHHHHHCCHSS-HHHHSS.....THHHHHHHHHHHHHHHHHCHHHHBEEEECBBBSTT........S.S-EEEEETTCCC CS
        SecY  86 gEqitekGiGnGisllifagivarlpkalsglielale...gilallllllvtllvillvvyveeaerripvqyakr..grk..ggqssylPlklnyag 177
                 gEqite+GiGnGis++ifagiva+lp a++++ie+a++   ++l lll+ +++++v+++vv+ve+++rri v+yakr  gr+  ++qs++lPlk+n+ag
  CTQ30277.1 175 GEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQgdlHFLLLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRqqGRRvyAAQSTHLPLKVNMAG 273
                 *******************************999988888888899999999999999*****************99898999999************* PP

                 SCHHHHHHHHHHHHHCCCCS..........TCCCS.......THHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHCCHHTBSSSCTTTTCHHHHHHHHHH CS
        SecY 178 viPiIfassllalpstiaqfl.........lalls.......psvlyvvlyvlliifFayfyteitfnpkevaenlkksggfipgirpgketakyLekv 260
                 viP Ifass++++p+ti++++         +   +       +++lyv+ly+  iifF++fyt+++fnp+e+a+nlkksg+f+pgirpg++taky++kv
  CTQ30277.1 274 VIPAIFASSIILFPATITSWFgggtgwnwlT---TislylqpGQPLYVLLYASAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKV 369
                 ***********************99966540...244566678899***************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTTS..T.T.TTHHHHHHHHHHHHHHH CS
        SecY 261 lsritliGalflaliavlpdllgasl.i.gafggtslLivVgvaletv 306
                 ++r+tl+Gal++++i+++p++++  + + ++fggtslLivV v+++++
  CTQ30277.1 370 MTRLTLVGALYITFICLIPEFMRDAMkVpFYFGGTSLLIVVVVIMDFM 417
                 ************************4454479**************986 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.4    0.0001       0.9      70      96 ..     217     243 ..     207     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0001
       Orf78  70 llavvcvlvllyviyYfvilrerqkss 96 
                 +l ++ v vl++++ +fv+  er ++ 
  CTQ30277.1 217 FLLLLLVAVLVFAVTFFVVFVERGQRR 243
                 67889999************9997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 3316.72
//
Query:       CTQ30278.1  [L=144]
Description: 50S ribosomal protein L15 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-33  114.5   2.0    6.6e-33  114.1   2.0    1.2  1  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27
  ------ inclusion threshold ------
      0.025   14.0   0.2      0.041   13.3   0.2    1.3  1  Ribosomal_L18   Ribosomal protein 60S L18 and 50S L18e


Domain annotation for each model (and alignments):
>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   2.0   7.4e-37   6.6e-33       2     127 ..      28     143 ..      27     144 .] 0.93

  Alignments for each domain:
  == domain 1  score: 114.1 bits;  conditional E-value: 7.4e-37
                     GGGTSSTTTTTTTTT-S--......S--.........---GGG..---EEEEHHHHHHTTTTGTTS------EEEGGGTTTTSSS....SE.EEE CS
  Ribosomal_L27A   2 GktgGrGhkGqkkrsgvkkkpgfeGGqmplyrrlpkrGfknskfkkeykvvnlkdLdelideerleladeaeeidleelaeaglikkkdgv.Kvl 95 
                     GktgGrGhkGqk+rsg+ +++gfeGGqmplyrrlpk+Gf+++k +  ++++ l+dL       ++      +++dl++l++a++i  + ++ Kv+
      CTQ30278.1  28 GKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRK-AMITAEIRLSDLA-----HVE-----GDVVDLNALKAANIIGVQIEFaKVI 111
                     9**************************************9644.67889********.....443.....379********************** PP

                     --S---.--EEEESEE-HHHHHHHHHTT-EEE CS
  Ribosomal_L27A  96 gkgeltkklkvkaskfSkkAkekIeaaGGkve 127
                      +ge+t++++v+  +++k A+++IeaaGGk+e
      CTQ30278.1 112 LSGEVTRPVTVRGLRVTKGARAAIEAAGGKIE 143
                     ******************************97 PP

>> Ribosomal_L18  Ribosomal protein 60S L18 and 50S L18e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   4.5e-06     0.041      97     119 ..     120     142 ..     105     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.5e-06
  Ribosomal_L18  97 lsvaALrftetararilkaGGei 119
                    ++v  Lr+t+ ara i++aGG+i
     CTQ30278.1 120 VTVRGLRVTKGARAAIEAAGGKI 142
                    68999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1124.33
//
Query:       CTQ30279.1  [L=59]
Description: 50S ribosomal protein L30 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-19   67.1   0.1      1e-18   66.9   0.1    1.1  1  Ribosomal_L30  Ribosomal protein L30p/L7e


Domain annotation for each model (and alignments):
>> Ribosomal_L30  Ribosomal protein L30p/L7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.1   5.8e-23     1e-18       1      51 []       5      55 ..       5      55 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 5.8e-23
                   EEEEE-S-STTS-HHHHHHHHHTT-SSTTEEEE--SSHHHHHHHHHCCCGE CS
  Ribosomal_L30  1 lfVtrirsiigvppkvrktLqlLgLrkingtvvklntpsirGmLkkVkhlV 51
                   +++t++rs+ig+ pk+++tL +LgLr+i++tv++++tp++rGm++ V+ +V
     CTQ30279.1  5 IKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMV 55
                   69********************************************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 503.85
//
Query:       CTQ30280.1  [L=208]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.34
# Mc/sec: 1821.81
//
Query:       CTQ30281.1  [L=167]
Description: 30S ribosomal protein S5 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-30  104.8   0.5    2.2e-30  103.9   0.5    1.5  1  Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
    4.4e-30  103.4   2.6    7.9e-30  102.6   2.6    1.4  1  Ribosomal_S5    Ribosomal protein S5, N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.5   2.5e-34   2.2e-30       2      72 .]      87     157 ..      86     157 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 2.5e-34
                     EEETTEEEEEEE--TT--EES-HHHHHHHHHHT--SEE---BS-SSHHHHHHHHHHHHHHTTTT-.-GGGG CS
  Ribosomal_S5_C   2 gkfgavkvllkpaprGtGiiaggavravlelaGikDvlakslgsrnpinvvkAtfeALkklrspeevaalR 72 
                     g + +++v+++pa++GtGiiagga+ravle+aG+++vlak++gs+npinvv+At+++L++++sp+ vaa+R
      CTQ30281.1  87 GTHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVRNVLAKAYGSTNPINVVRATIDGLENMKSPDMVAAKR 157
                     78999****************************************************************98 PP

>> Ribosomal_S5  Ribosomal protein S5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   2.6   8.8e-34   7.9e-30       1      64 [.      11      74 ..      11      75 .. 0.98

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 8.8e-34
                  XEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTEEEEEEEEESSHHHHHHHHHHHHHHTEEE- CS
  Ribosomal_S5  1 lkekvlkikrvqkvtkgGrrtsfsalvvvGdgnGlvGlGvgkakevatAirkAiekAkknlvpv 64
                  l+ek+++++rv+k++kgGr++sf+al+vvGdgnG+vG+G+gka+ev+ Ai+kA+ekA++n++ v
    CTQ30281.1 11 LQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINV 74
                  79************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 1529.51
//
Query:       CTQ30282.1  [L=117]
Description: 50S ribosomal subunit protein L18 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-44  148.8   4.5    8.2e-44  148.7   4.5    1.0  1  Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. a
     0.0032   17.5   0.1     0.0036   17.3   0.1    1.1  1  Ribosomal_L5e   Ribosomal large subunit proteins 60S L5, and 
  ------ inclusion threshold ------
      0.087   12.5   0.2       0.17   11.5   0.1    1.4  1  TM1506          Domain of unknown function (DUF1893)


Domain annotation for each model (and alignments):
>> Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.7   4.5   1.4e-47   8.2e-44       1     116 []       1     117 []       1     117 [] 0.96

  Alignments for each domain:
  == domain 1  score: 148.7 bits;  conditional E-value: 1.4e-47
                     S-CCHHHCHHHHHHTTT--..TTSSS-EEEEEE-SS-EEEEEE-TTT--EEEEECS-SCCCT..S-SSSCHHHHHHHHHHHHHHHCHHCHTC-EE CS
  Ribosomal_L18p   1 kkkkearkrRhkRirkkls..gtaerprlvvfrsnrhiyaQviddvkgktlasastlekelk..lkstknkeaakkvgeliAerakekgiekvvf 91 
                     ++kk+ar+rR++R+r+kl+  g++   rlvv+r++rhiyaQvi+ + +++l++ast+ek++   lk+t+nk+aa++vg+++Aera+ekgi++v f
      CTQ30282.1   1 MDKKSARIRRATRARRKLQelGAT---RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAeqLKYTGNKDAAAAVGKAVAERALEKGIKDVSF 92 
                     689****************65555...**********************************98899***************************** PP

                     --TTSSS-CHHHHHHHHHHCTSSB- CS
  Ribosomal_L18p  92 DrggykYhGrvaalAdaaReaGlkf 116
                     Dr+g++YhGrv+alAdaaReaGl+f
      CTQ30282.1  93 DRSGFQYHGRVQALADAAREAGLQF 117
                     ***********************98 PP

>> Ribosomal_L5e  Ribosomal large subunit proteins 60S L5, and 50S L18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   6.1e-07    0.0036      34     100 ..      22      86 ..       4     110 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.1e-07
  Ribosomal_L5e  34 pkyRlvVrvtnkdiicqiayakiegdkvlaaayskelpkygvkvgltnyaaaYatglllarrllkkl 100
                       RlvV+ t ++i++q+++   +g +vl+aa++ e    +      n  aa a+g  +a+r+l+k 
     CTQ30282.1  22 GATRLVVHRTPRHIYAQVIAP--NGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKG 86 
                    458****************99..78999998888776644433344578889999********9985 PP

>> TM1506  Domain of unknown function (DUF1893)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   2.9e-05      0.17      56     102 ..      22      69 ..      20      74 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.9e-05
                 HHHHHHHHH--SEEEEEEEEHHHHHHHH.HTT--EEEEEEESS-B-SS CS
      TM1506  56 aAaaLlvlggvkevYaeviSeaAlelLe.eegikvsyeelvpyIinrk 102
                 +A  L+v+   +++Ya+vi  ++ e+L  ++ ++ + +e+ +y  n++
  CTQ30282.1  22 GATRLVVHRTPRHIYAQVIAPNGSEVLVaASTVEKAIAEQLKYTGNKD 69 
                 688899******************998615678888888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 902.99
//
Query:       CTQ30283.1  [L=177]
Description: 50S ribosomal protein L6 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-40  135.8   0.2    1.1e-18   67.6   0.0    2.1  2  Ribosomal_L6  Ribosomal protein L6


Domain annotation for each model (and alignments):
>> Ribosomal_L6  Ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   1.3e-22   2.3e-18       1      76 []      11      82 ..      11      82 .. 0.98
   2 !   67.6   0.0   6.3e-23   1.1e-18       1      75 [.      90     164 ..      90     165 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 1.3e-22
                  CSTTEEEEEETTTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHHHHHHHHHHHHHHHHHHHHTC CS
  Ribosomal_L6  1 iPvgvrvsikggqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekvAligtvrslinnmikGVteg 76
                  +P+gv+v+i+g q+++++G++geltr+++++v+v+  + +n +t+ +++g    ++ + gt+r+l n m+ GVteg
    CTQ30283.1 11 VPAGVDVKING-QVITIKGKNGELTRTLNDAVEVK--HADNALTFGPRDGYADGWA-QAGTARALLNSMVIGVTEG 82
                  7*********8.*******************9999..99*****************.*****************98 PP

  == domain 2  score: 67.6 bits;  conditional E-value: 6.3e-23
                   CSTTEEEEEETTTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHH....HHHHHHHHHHHHHHHHHHT CS
  Ribosomal_L6   1 iPvgvrvsikggqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekv....AligtvrslinnmikGVte 75 
                   ++vg+r+ +kg+ ++l lG+++++  ++p g+t e++    ++t+iv++g dk+      A+++ +r+++++++kGV++
    CTQ30283.1  90 VGVGYRAAVKGNVVNLALGFSHPVDHQLPAGITAECP----TQTEIVLKGADKQVIgqvaADLRAYRRPEPYKGKGVRY 164
                   79***********************************....************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1523.59
//
Query:       CTQ30284.1  [L=130]
Description: 30S ribosomal protein S8 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-49  166.6   0.1    2.5e-49  166.4   0.1    1.0  1  Ribosomal_S8  Ribosomal protein S8


Domain annotation for each model (and alignments):
>> Ribosomal_S8  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   0.1   1.4e-53   2.5e-49       1     126 [.       5     129 ..       5     130 .] 0.99

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 1.4e-53
                   -HHHHHHHHHHHHHHTT-SEEEEE--HHHHHHHHHHHHCTSEEEEEEECCCCCCEEEEE-BSSS-SBSSSEEEE-SBTTC--EE-CCC---CGGGTS CS
  Ribosomal_S8   1 DpiadmltrirNaekakkeevevpasklkeeilkvLkeeGyikdfeveeekkkkikielkynkkkksvikklkrvskpgrrvYakvkelpkvlnglG 97 
                   DpiadmltrirN+++a+k  v++p+sklk +i++vLkeeG+i+df+ve ++k +++++lky + +k v+++++rvs+pg+r+Y+k++elpkv+ glG
    CTQ30284.1   5 DPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKYFQ-GKAVVESIQRVSRPGLRIYKKKDELPKVMAGLG 100
                   9**********************************************9888999********9.89******************************* PP

                   EEEEEETTEEEEHHHHHHCT--EEEEEEE CS
  Ribosomal_S8  98 iaivsTskGvmtdkeArkkkvGGevlayv 126
                   ia+vsTskGvmtd+ Ar++++GGe+++yv
    CTQ30284.1 101 IAVVSTSKGVMTDRAARQAGLGGEIICYV 129
                   ****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1125.89
//
Query:       CTQ30285.1  [L=101]
Description: 30S ribosomal protein S14 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-27   92.9   1.6      1e-26   92.4   1.6    1.2  1  Ribosomal_S14  Ribosomal protein S14p/S29e


Domain annotation for each model (and alignments):
>> Ribosomal_S14  Ribosomal protein S14p/S29e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   1.6   5.8e-31     1e-26       1      54 []      47     100 ..      47     100 .. 0.99

  Alignments for each domain:
  == domain 1  score: 92.4 bits;  conditional E-value: 5.8e-31
                    S------SS..CTTT---SSS--SSSEE-GGG-EHHHHHHHTTT...TT-EE-- CS
  Ribosomal_S14   1 klaklprnssptrirnrCrvtGrprGvirkfgLsRicfRelAlkgelpGvkKaS 54 
                    kl++lpr+ssp+r+rnrCr tGrp+G++rkfgLsRi+ Re+A++ge+pG+kKaS
     CTQ30285.1  47 KLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKAS 100
                    79***************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 793.71
//
Query:       CTQ30286.1  [L=179]
Description: 50S ribosomal protein L5 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-41  139.2   0.0      6e-41  138.5   0.0    1.3  1  Ribosomal_L5_C  ribosomal L5P family C-terminus
      6e-29  100.2   0.3    1.1e-28   99.3   0.3    1.4  1  Ribosomal_L5    Ribosomal protein L5
  ------ inclusion threshold ------
       0.05   13.4   0.1       0.24   11.2   0.0    2.1  2  DUF2862         Protein of unknown function (DUF2862)


Domain annotation for each model (and alignments):
>> Ribosomal_L5_C  ribosomal L5P family C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   0.0     1e-44     6e-41       1      94 []      84     177 ..      84     177 .. 0.99

  Alignments for each domain:
  == domain 1  score: 138.5 bits;  conditional E-value: 1e-44
  Ribosomal_L5_C   1 piGvkvtLrgekmyefldkllevvlprlrdFkGiskssfdgrGnvsfGikeqiifpeieydkdkgifGmditivttaktdeearallkelgipf 94 
                     piG+kvtLrge+m+ef+++l+++++pr+rdF+G+s++sfdgrGn+s+G++eqiifpei+ydk+++++G+diti+ttak+dee rall ++ +pf
      CTQ30286.1  84 PIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPF 177
                     8********************************************************************************************9 PP

>> Ribosomal_L5  Ribosomal protein L5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.3   1.8e-32   1.1e-28       1      57 []      24      80 ..      24      80 .. 0.99

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 1.8e-32
                  SCTTS-EEEEEEEEEE-SSSSSCHHHHHCCHHHHCCCHSS--EECC--TTCTTTCSC CS
  Ribosomal_L5  1 NvMqvPrleKivinmgvGeagedkkllekaakeLaeItGQkPvvtkakksianFkiR 57
                  +vMqvPr+eKi++nmgvGea +dkkll++aa++La+I+GQkP +tka+ks+a+FkiR
    CTQ30286.1 24 SVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIR 80
                  59******************************************************9 PP

>> DUF2862  Protein of unknown function (DUF2862)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.16   9.7e+02      11      30 ..       9      28 ..       2      50 .. 0.66
   2 ?   11.2   0.0   4.1e-05      0.24      25      57 ..      69     101 ..      40     105 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.16
                -S---TTHHHHBT-..EEEE CS
     DUF2862 11 rdrvskelveklkkepvgti 30
                +d v k+l+++ + ++v ++
  CTQ30286.1  9 KDEVVKKLMTEFNYNSVMQV 28
                67777777777777666665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.1e-05
                 ..EEEEEEEEE-SSSSEEEEEEETTS-EEEEET CS
     DUF2862  25 epvgtikdfKmtDGsgiGvvvkledgtktWFFe 57 
                 +++  + +fK+  G  iG+ v+l  +    FFe
  CTQ30286.1  69 KARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE 101
                 355689*****************8776655887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1474.41
//
Query:       CTQ30287.1  [L=104]
Description: 50S ribosomal subunit protein L24 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-23   83.2   0.1    1.3e-23   83.2   0.1    1.6  2  ribosomal_L24  Ribosomal proteins 50S L24/mitochondrial 39S L
    3.5e-05   23.6   3.2    8.2e-05   22.4   3.2    1.7  1  KOW            KOW motif


Domain annotation for each model (and alignments):
>> ribosomal_L24  Ribosomal proteins 50S L24/mitochondrial 39S L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.41   3.7e+03      51      64 ..      19      34 ..       9      35 .. 0.53
   2 !   83.2   0.1   1.4e-27   1.3e-23       1      65 []      39     103 ..      39     103 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.41
  ribosomal_L24 51 dgk..kvRvskksgee 64
                   +gk  kv+   +sg++
     CTQ30287.1 19 KGKrgKVKNVLSSGKV 34
                   3443345544555555 PP

  == domain 2  score: 83.2 bits;  conditional E-value: 1.4e-27
  ribosomal_L24   1 vnvvkkhvkpsqqneq.GgiiekEapIhvSnVmlvdpkcgkptrvgfrlkedgkkvRvskksgeei 65 
                    +n+vkkh+kp ++ +q Ggi+ekEa+I vSnV++++  +gk++rvgfr+ edgkkvR++k++ e+i
     CTQ30287.1  39 INLVKKHQKPVPALNQpGGIVEKEAAIQVSNVAIFNAATGKADRVGFRF-EDGKKVRFFKSNSETI 103
                    69********9987777******************************99.6********9987765 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   3.2   9.2e-09   8.2e-05       2      32 .]       8      37 ..       7      37 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 9.2e-09
                TSEEEESSSTTTTCEEEEEEEETTTTEEEEE CS
         KOW  2 GdhVkVvsGphkGktGkVvkvdqhkvrVfvd 32
                +d+V+V+ G++kGk GkV+ v     +V+v+
  CTQ30287.1  8 DDEVIVLTGKDKGKRGKVKNVLSSG-KVIVE 37
                8********************9988.77765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.20s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 945.14
//
Query:       CTQ30288.1  [L=123]
Description: 50S ribosomal protein L14 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-55  184.2   1.0    8.7e-55  184.0   1.0    1.0  1  Ribosomal_L14  Ribosomal protein L14p/L23e
  ------ inclusion threshold ------
      0.064   11.5   0.1      0.073   11.3   0.1    1.0  1  Gp58           gp58-like protein


Domain annotation for each model (and alignments):
>> Ribosomal_L14  Ribosomal protein L14p/L23e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.0   1.0   9.7e-59   8.7e-55       1     122 []       1     123 []       1     123 [] 0.98

  Alignments for each domain:
  == domain 1  score: 184.0 bits;  conditional E-value: 9.7e-59
                    ..CSS-EEE--SSSSBSEEEEEEETT-.---EE-SSSEEEEEESSS-T...TTSSCEEEEEEEE-SS-EE-TTS-EEEESS-EEEEB-TT.S-BSS CS
  Ribosomal_L14   1 miqlktrlkvaDNsgakevecikvlggkkrkaasvGdiivvsvkkakpkgkvkkgdvvkavvvrtkkevrrkdGsvirfddnaaVllnkk.geplG 95 
                    miq +t+l+vaDNsga++v+cikvlgg++r++a vGdii +++k+a+p+gkvkkgdv+kavvvrtkk vrr+dGsvirfd na+V+ln++ ++p+G
     CTQ30288.1   1 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVILNNNsEQPIG 96 
                    9**************************************************************************************977489*** PP

                    -.B-SBEEHHHHHH.-HHHHHTBSBE. CS
  Ribosomal_L14  96 trifgpvarelrekkflkivslApevl 122
                    trifgpv+relr++kf+ki+slApevl
     CTQ30288.1  97 TRIFGPVTRELRTEKFMKIISLAPEVL 123
                    *************************96 PP

>> Gp58  gp58-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   8.2e-06     0.073     343     393 ..      33      85 ..      23     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.2e-06
        Gp58 343 rqsgdsiklaikaklpqskmsakeiisainLn.gyGvri.sGeriaLdGnttv 393
                 ++ gd ik+ ik+  p  k+   +++ a+ +  ++Gvr   G  i +dGn+ v
  CTQ30288.1  33 AGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRtKKGVRRpDGSVIRFDGNACV 85 
                 5789************************9885268**86379********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1086.22
//
Query:       CTQ30289.1  [L=84]
Description: 30S ribosomal protein S17 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-34  116.3   2.2    5.4e-34  116.1   2.2    1.1  1  Ribosomal_S17  Ribosomal protein S17


Domain annotation for each model (and alignments):
>> Ribosomal_S17  Ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   2.2     3e-38   5.4e-34       1      67 [.      10      76 ..      10      77 .. 0.99

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 3e-38
                   EEEEE--STTEEEEEEEEEEEETTTTEEEEEEEEEEEE-TTTS--TT-EEEEEEECECSSSEEEEEE CS
  Ribosomal_S17  1 GvVvsdkmdkTvvVrverlvkhpkykkyvkrrkkylahdennsvkvGDiVrieecrPlSktkrfvvv 67
                   G+Vvsdkm+k++vV++er+vkhp y+k++kr++k+++hdenn++ +GD+V+i+ecrPlSktk++++v
     CTQ30289.1 10 GRVVSDKMEKSIVVAIERMVKHPVYGKFIKRTTKLHVHDENNECGIGDKVEIRECRPLSKTKSWTLV 76
                   9****************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 742.62
//
Query:       CTQ30290.1  [L=63]
Description: 50S ribosomal subunit protein L29 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-23   81.3   7.7      4e-23   81.1   7.7    1.0  1  Ribosomal_L29  Ribosomal L29 protein
     0.0011   19.1   2.7     0.0013   18.8   2.7    1.1  1  MRP-L47        Mitochondrial 39-S ribosomal protein L47 (MRP-


Domain annotation for each model (and alignments):
>> Ribosomal_L29  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   7.7   4.5e-27     4e-23       1      57 []       4      60 ..       4      60 .. 0.99

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 4.5e-27
                   HHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHTSSS-CHHHHHHHHHHHHHHHHHHHH CS
  Ribosomal_L29  1 kelrelsdeeLkeklkelkkeLfnLrfqkatgqlenpsrirkvRkdIARikTvlrer 57
                   kelre+s+eeL+++l +l +e+fnLr+q+a+gql++++ +++vR+d+AR+kT+l+++
     CTQ30290.1  4 KELREKSVEELNAELLNLLREQFNLRMQAASGQLQQTHLLKQVRRDVARVKTLLTQK 60
                   7******************************************************98 PP

>> MRP-L47  Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   2.7   1.4e-07    0.0013      24      86 ..       2      59 ..       1      60 [. 0.89

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.4e-07
     MRP-L47 24 aaeeLrkksfedLhklwyvllkekNmLlteeeellrkqekmpsperlkkvkesMeniktVlke 86
                +a+eLr+ks+e+L+   ++ll+e+  L      +++ + + ++  +lk+v++  +++kt l++
  CTQ30290.1  2 KAKELREKSVEELNAELLNLLREQFNL-----RMQAASGQLQQTHLLKQVRRDVARVKTLLTQ 59
                689*********************999.....6777788888999999****99999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1210  (0.0674884); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 556.71
//
Query:       CTQ30291.1  [L=136]
Description: 50S ribosomal protein L16 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-46  157.2   0.4    2.3e-46  157.0   0.4    1.0  1  Ribosomal_L16  Ribosomal protein L16p/L10e


Domain annotation for each model (and alignments):
>> Ribosomal_L16  Ribosomal protein L16p/L10e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.0   0.4   1.3e-50   2.3e-46       1     132 []       4     131 ..       4     131 .. 0.97

  Alignments for each domain:
  == domain 1  score: 157.0 bits;  conditional E-value: 1.3e-50
                    HXSSXXBSSSXXSSTSXXXSXXXXXESXEEEEESSXEEEEHHHHHHHHHHHCTCCCCTSXCEEXXSXXXXEEEEE-SS-TTTSSSSXEEEEEEEEE CS
  Ribosomal_L16   1 pkrkkyrKsrkryirgvstkgtklefgdygLvalekgqltaealeaariainrylkkkrgkklwirvfphhpvtkkagedRmgkGkGkpegwvarv 96 
                    pkr+k+rK +k  +rg + +gt ++fg++gL+a  +g+lta+++eaar+a++r +k  r++k+wirvfp++p+t+k+ e+RmgkGkG++e+wva +
     CTQ30291.1   4 PKRTKFRKVHKGRNRGLA-QGTDVSFGTFGLKAVGRGRLTARQIEAARRAMTRAVK--RQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALI 96 
                    89********95558886.99***********************************..************************************** PP

                    XSSCEEEEETTXXXSHHHHHHHHHHHHTSSSXEEEE CS
  Ribosomal_L16  97 kigqiifeikagvneeiakealrraasKlpiktkiv 132
                    ++g++++e+ +gv ee a+ea+ +aa+Klpikt +v
     CTQ30291.1  97 QPGKVLYEM-DGVPEELAREAFGLAAAKLPIKTTFV 131
                    *********.88*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1037.94
//
Query:       CTQ30292.1  [L=232]
Description: 30S ribosomal protein S3 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-41  141.2   0.9    2.1e-41  140.3   0.9    1.5  1  Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
    4.2e-19   68.2   3.4    9.5e-19   67.0   3.4    1.6  1  KH_2            KH domain
    0.00032   20.5   0.2    0.00074   19.3   0.2    1.7  1  KH_4            KH domain
  ------ inclusion threshold ------
      0.026   14.5   0.0      0.043   13.8   0.0    1.2  1  MRP-S24         Mitochondrial ribosome subunit S24


Domain annotation for each model (and alignments):
>> Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.3   0.9   4.8e-45   2.1e-41       1      83 []     120     202 ..     120     202 .. 0.99

  Alignments for each domain:
  == domain 1  score: 140.3 bits;  conditional E-value: 4.8e-45
                     HHHHHHTT--HHHHHHHHHHHHHHCC-SEEEEEEEC-SS.TTT--EEEEEEC----TCHHHH-EEEEEEEEETTEEEEEEEEE CS
  Ribosomal_S3_C   1 iaeqlekrvsfRramkkairramkagakGikiqvsGrLggaeiarsekykeGrvplhtlradidyavaeaktkyGiiGvkVwI 83 
                     i +qle+rv fRramk+a+++am+ gakGik++vsGrLggaeiar+e+y+eGrvplhtlradidy ++ea+t+yG+iGvkVwI
      CTQ30292.1 120 ITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWI 202
                     789*******************************************************************************9 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   3.4   2.1e-22   9.5e-19       1      78 []      38     111 ..      38     111 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 2.1e-22
                 HHHHHHHHHTECETEEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEEEEEEETTTGG CS
        KH_2   1 eipeslaveikkagvskveIertanrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVklnivkVkkpel 78 
                 +++++l++e++ka vs+++Ier+a+ ++++i++++pgivIGk+G++++k++k +  +     g ++++ni +V+kpel
  CTQ30292.1  38 KVRQFLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIA----GVPAQINIAEVRKPEL 111
                 69**************************************************998888....**************96 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   1.7e-07   0.00074       7      59 ..      42      92 ..      37     104 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.7e-07
        KH_4  7 ilkalvddpeevevtee.eeeeeveielnvegedlGrvIGkrGrtldAlqylvs 59
                +l++ +   ++ +v+   +e+  ++i++++++   G+vIGk+G+ +  l+ +v 
  CTQ30292.1 42 FLTKEL---AKASVSRIvIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVA 92
                444433...35555555577899*********************9998888876 PP

>> MRP-S24  Mitochondrial ribosome subunit S24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   9.6e-06     0.043      28      88 ..      12      69 ..       3      75 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.6e-06
     MRP-S24 28 iavrKswnswntsnlegeeraaettveDvfirkFitGtfhkllaseiiikRranviriaal 88
                +++ K wns+  +n ++    a+    D  +r+F+t    k+ +s i+i R a+ ir++  
  CTQ30292.1 12 LGIVKPWNSTWFANTKEF---ADNLDSDFKVRQFLTKELAKASVSRIVIERPAKSIRVTIH 69
                678899999887777665...566668999***************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1726.72
//
Query:       CTQ30293.1  [L=110]
Description: 50S ribosomal protein L22 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-34  117.5   2.0      3e-34  117.4   2.0    1.0  1  Ribosomal_L22  Ribosomal protein L22p/L17e


Domain annotation for each model (and alignments):
>> Ribosomal_L22  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   2.0   1.7e-38     3e-34       1     103 []       5     108 ..       5     108 .. 0.97

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 1.7e-38
                    EEEEEESS-HHHHHHHHHHHTTSBHHHHHHHHHT-SSTTHHHHHHHHHHHHHHHH..HT.-GGGEEEEEEEEEEEEEEEEEEEESTTEEEEEEEEE CS
  Ribosomal_L22   1 akgsnlrvsfkklrevarlIrgmkveeAlkyLkfskkkaakfvlklLknaeanaelkgl.dvdslvIeeiqvnkgpklkrrtyrArGrinpirksp 95 
                    a+++++r s +k+r va+lIrg+kv++Al++L +++kkaa  v+k+L++a+anae++ + d d+l +++i+v++gp +kr+++rA+Gr+++i k++
     CTQ30293.1   5 AQHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGaDIDDLKVAKIFVDEGPSMKRIMPRAKGRADRILKRT 100
                    67899**************************************************87779************************************ PP

                    EEEEEEEE CS
  Ribosomal_L22  96 chievvlk 103
                    +hi+vv++
     CTQ30293.1 101 SHITVVVS 108
                    ******85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 905.01
//
Query:       CTQ30294.1  [L=92]
Description: 30S ribosomal protein S19 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-35  121.1   0.0    1.5e-35  120.9   0.0    1.0  1  Ribosomal_S19  Ribosomal protein S19


Domain annotation for each model (and alignments):
>> Ribosomal_S19  Ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0   8.5e-40   1.5e-35       1      81 []       3      83 ..       3      83 .. 0.99

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 8.5e-40
                   .HHHSSTTCCCHHHHHHHHHHTS-----EEES-TT-B--GGGTT-EEEEE-SSSEEEEE--CCCTTSBCGGGT-SS----S CS
  Ribosomal_S19  1 rslkkgpfvqesllkkvrkakaekkkevikthsRdstIlPemvgltvgVynGktfvpveikeemvGhkLgEFspTrkpvkh 81
                   rslkkgpf++ +llkkv+ka ++++k++++t+sR+stI+P+m+glt++V+nG+++vpv +++emvGhkLgEF+pTr++++h
     CTQ30294.1  3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGH 83
                   89********************9*******************************************************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 759.71
//
Query:       CTQ30295.1  [L=273]
Description: 50S ribosomal protein L2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-55  187.0   3.1      2e-55  186.3   3.1    1.3  1  Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
    2.9e-34  116.8   0.9    8.5e-34  115.4   0.9    1.7  2  Ribosomal_L2    Ribosomal Proteins L2, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.3   3.1   2.3e-59     2e-55       2     126 .]     126     249 ..     125     249 .. 0.99

  Alignments for each domain:
  == domain 1  score: 186.3 bits;  conditional E-value: 2.3e-59
                     SSS-EBSSSS-TTB-BBSE-SSTTS--SSS-SSSB-EEBB-B.SSEEEEEETTS-EEEEETTSBEBES-BS-TTCTT----STTHHHHTTBS--- CS
  Ribosomal_L2_C   2 vGnvlplknipeGtivhnielkpgkggklarsaGtyaqvvakegkkvtvklpSgevrkvssecrAtiGvvsngehkekklgkAgrkrwlgrrpkv 96 
                      Gn+lp++nip+G++vhn+e+kpgkgg+larsaGty+q+va++g +vt++l+Sge+rkv+++crAt+G+v+n+eh+ + lgkAg++rw+g+rp+v
      CTQ30295.1 126 AGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTV 220
                     7********************************************************************************************** PP

                     -SSSS-TTTSSS--SSSS--SSSSTEETTC CS
  Ribosomal_L2_C  97 rGvamnpvdHphGGGeGktksrkapvspwg 126
                     rG+amnpvdHphGGGeG++ ++ +pvspwg
      CTQ30295.1 221 RGTAMNPVDHPHGGGEGRNFGK-HPVSPWG 249
                     *******************999.9*****8 PP

>> Ribosomal_L2  Ribosomal Proteins L2, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4   0.9   9.5e-38   8.5e-34       1      76 [.      42     117 ..      42     118 .. 0.98
   2 ?   -2.6   0.0      0.64   5.7e+03      35      52 ..     139     156 ..     133     159 .. 0.77

  Alignments for each domain:
  == domain 1  score: 115.4 bits;  conditional E-value: 9.5e-38
                   TB-TT--BSSTT--------EE-B--S---SS--EEEEEEE--TT-SS-EEEEEETTTEEEEEE--SS--SS-EE- CS
  Ribosomal_L2   1 GrnnsgritvrhrggGhkkkyrlidfkrnkekvkgkVveieyDpgRsApiAlvkyedgekryiiapeglkvGdtvv 76 
                   Grnn+grit+rh+ggGhk+ yr++dfkrnk++++++V+++eyDp+RsA+iAlv y+dge+ryi+ap+glk+Gd + 
    CTQ30295.1  42 GRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQ 117
                   9************************************************************************985 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.64
                   EEEEEEE--TT-SS-EEE CS
  Ribosomal_L2  35 gkVveieyDpgRsApiAl 52 
                    +V ++e  pg+ +++A+
    CTQ30295.1 139 STVHNVEMKPGKGGQLAR 156
                   568888888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       240  (0.0133861); expected 358.6 (0.02)
Passed bias filter:                      209  (0.0116571); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 1826.69
//
Query:       CTQ30296.1  [L=100]
Description: 50S ribosomal subunit protein L23 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-31  106.6   4.7      7e-31  106.5   4.7    1.0  1  Ribosomal_L23  Ribosomal protein L23
     0.0031   17.2   0.3     0.0046   16.7   0.3    1.2  1  ubiquitin      Ubiquitin family
  ------ inclusion threshold ------
      0.049   14.1   0.5      0.061   13.8   0.5    1.1  1  P16-Arc        ARP2/3 complex 16 kDa subunit (p16-Arc)
      0.051   13.7   1.9       0.13   12.5   1.9    1.7  1  WHEP-TRS       WHEP-TRS domain
      0.071   13.6   0.2      0.086   13.4   0.2    1.1  1  Cadherin-like  Cadherin-like beta sandwich domain
       0.15   12.2   0.3       0.34   11.1   0.1    1.7  2  DnaJ           DnaJ domain


Domain annotation for each model (and alignments):
>> Ribosomal_L23  Ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   4.7   2.3e-34     7e-31       1      86 []       9      95 ..       9      95 .. 0.97

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 2.3e-34
                   SSEEEE--SHHHHHHHTT.E.EEEEE-SS-THHHHHHHHHHHHT--EEEEEEEEE--EBESSSSSEEBE--EEEEEEEESSS-SSS. CS
  Ribosomal_L23  1 dvilkPvitEkstklaek.nkyvFeVakdanKleikkaveklFgVkVekVntlnvkgkkkrvgrkvgrrksyKkaiVtLkegekidl 86
                   +v+++P+++Ek+ +++ek n++v++Vakda+K eik+av+klF+V+Ve Vntl+vkgk+kr+g+++grr+++Kka+VtLkeg+++d+
     CTQ30296.1  9 KVLRAPHVSEKASTAMEKtNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDF 95
                   5899*********99999889**************************************************************9986 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.3   1.6e-06    0.0046       6      47 ..      25      67 ..      21      74 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.6e-06
                TTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGE.EEEETTEE CS
   ubiquitin  6 ldgkkitleveesdtveelKekiaekegipaeqq.rLiysGkv 47
                 + ++i l+v+++ t +e+K+++++ +++++e    L+ +Gkv
  CTQ30296.1 25 EKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVnTLVVKGKV 67
                56789***************************99999999997 PP

>> P16-Arc  ARP2/3 complex 16 kDa subunit (p16-Arc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.5     2e-05     0.061      51     103 ..       6      58 ..       3      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
                 HHHHHTSS---S-S-HHHHHHHHHHHHHHHHTS-GGGHHHHHHHS-HHHHHHH CS
     P16-Arc  51 ALkaalknppygakeqaakeralqlvlevLssikasdiekavksldkeeldvL 103
                  L ++l+ p +++k ++a e++ ++vl+v +   +++i++av++l + e++v+
  CTQ30296.1   6 RLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVV 58 
                 57789**************************************8776666554 PP

>> WHEP-TRS  WHEP-TRS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.9   4.3e-05      0.13      15      33 ..      32      51 ..      31      53 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.3e-05
    WHEP-TRS 15 LKaek.apkdeidaaVkkLL 33
                LK +k a k+ei+aaV+kL 
  CTQ30296.1 32 LKVAKdATKAEIKAAVQKLF 51
                787777************95 PP

>> Cadherin-like  Cadherin-like beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   2.9e-05     0.086      13      66 ..      25      92 ..      11      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.9e-05
  Cadherin-like 13 petteYtvdVdedvdsvtitatae.......dsvatvtvngvaveeg.......stetkdvsLneGrn 66
                    +t++  ++V++d+++  i+a+ +       + v t+ v+g+  + g       + +++ v+L+eG+n
     CTQ30296.1 25 EKTNTIVLKVAKDATKAEIKAAVQklfevevEVVNTLVVKGKVKRHGqrigrrsDWKKAYVTLKEGQN 92
                   45677889***************999*99998899999999999999999999999999*******98 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00011      0.34       5      25 ..      31      51 ..      30      53 .. 0.92
   2 ?   -2.9   0.0       2.5   7.6e+03      18      24 ..      81      87 ..      78      89 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                HHTSSTTG-HHHHHHHHHHHH CS
        DnaJ  5 iLgvskdasedeIkkaYrkla 25
                +L+v+kda+++eIk+a +kl 
  CTQ30296.1 31 VLKVAKDATKAEIKAAVQKLF 51
                8***************99985 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.5
                HHHHHHH CS
        DnaJ 18 kkaYrkl 24
                kkaY +l
  CTQ30296.1 81 KKAYVTL 87
                5666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1425  (0.0794802); expected 358.6 (0.02)
Passed bias filter:                      727  (0.0405488); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 758.10
//
Query:       CTQ30297.1  [L=201]
Description: 50S ribosomal protein L4, regulates expression of S10 operon [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-64  215.1   1.0    7.8e-64  214.9   1.0    1.0  1  Ribosomal_L4  Ribosomal protein L4/L1 family


Domain annotation for each model (and alignments):
>> Ribosomal_L4  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9   1.0   4.3e-68   7.8e-64       2     191 ..      13     198 ..      12     199 .. 0.99

  Alignments for each domain:
  == domain 1  score: 214.9 bits;  conditional E-value: 4.3e-68
                   EE-HHHHSS---HHHHHHHHHHHHHSS-EE------TTTSS---S-SS-SSSSSS---S-TTSTTSTT---SS---S.EEHHHHHHHHHHHHHHHHH CS
  Ribosomal_L4   2 eLspkvFaapirrdlihravvaylanrrqgtastkarsevsgsgrklwkQKGtGrARvgsirspiargGgvahgpkperdystklnkKvrrlAlrsa 98 
                   ++s+ +F+ ++++ l+h++vvay a +rqgt ++k+r+e++gsg+k+w+QKGtGrAR gsi+spi+r+Ggv+++ +p +d+s+k+nkK++r Al+s+
    CTQ30297.1  13 TVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEITGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARP-QDHSQKVNKKMYRGALKSI 108
                   58899***********************************************************************9.******************* PP

                   HHHHHHTT-EEEES---.-SS--HHHHHHHHHHTT-TTSSEEEEESSSSCHHHHHHTT-TTEEEEESTT--CHHHHHSSEEEEEHHHHHHHHH CS
  Ribosomal_L4  99 LsakakqglllvvdnlepleesktkelvellkklglksksvLivvsekdenlvlaarnlpgvevieveslnvydllkadkvvitksaveklee 191
                   Ls+ ++q++l+vv++++ +e +ktk l++ lk + l  + vLi+++e denl+laarnl++v+v ++++++  +l+  dkvv+t +av+++ee
    CTQ30297.1 109 LSELVRQDRLIVVEKFS-VEAPKTKLLAQKLKDMAL--EDVLIITGELDENLFLAARNLHKVDVRDANGIDPVSLIAFDKVVMTADAVKQVEE 198
                   ****************9.******************..****************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1604.13
//
Query:       CTQ30298.1  [L=233]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1802.76
//
Query:       CTQ30299.1  [L=209]
Description: 50S ribosomal protein L3 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.7e-15   54.4   7.5    1.9e-14   53.4   5.7    2.1  2  Ribosomal_L3  Ribosomal protein L3


Domain annotation for each model (and alignments):
>> Ribosomal_L3  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   5.7   1.1e-18   1.9e-14     145     290 ..      26     182 ..       3     186 .. 0.76
   2 !    1.3   0.0    0.0076   1.4e+02     321     344 ..     183     206 ..     181     209 .] 0.79

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 1.1e-18
                   CHHHH...HHHHHHSCS.CEEEEEEEECCCSS-SCCS..SHHEEEEECHCSCHHHHHHHHH.HCCTC.EEECCCCS-TTSEEEEEEEE---EEE-HH CS
  Ribosomal_L3 145 liead...leeikkeas.vvrviahtvirktkslaqK..kahllEiqvngGtiaekldfar.ealek.tvavaavFrqgeliDvigvtkGkGfeGvv 233
                    ie++   + ++k+ a    r i  t + k + +  K  + h     v+ G     + +a+ e++   +    + F++ + +Dv+g  kGkGf G+v
    CTQ30299.1  26 VIEVEanrVTQVKDLANdGYRAIQVTTGAKKANRVTKpeAGHFAKAGVEAGRGLWEFRLADgEEFTVgQNISVELFADVKKVDVTGTSKGKGFAGTV 122
                   5555433455566644314577777777776666655335689999999997777777776223333356666889999****************** PP

                   HHCT----STTTSSS..SSS-S-SS-S.SSSS--TTS--SEEESCCEEEEEEEEEEEEET CS
  Ribosomal_L3 234 kRWgvkklprkthrg..lRkvaaigaw.dparVsstvaraGqkGyhhRtelnkkiyrigk 290
                   kRW ++ + ++++ +  +R +++ig    p++V  + ++aGq G+ + t   + + r+++
    CTQ30299.1 123 KRWNFRTQDATHGNSlsHRVPGSIGQNqTPGKVFKGKKMAGQLGNERVTVQSLDVVRVDA 182
                   **************999********86269***************999999999999876 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.0076
                   TSCEEEEES--SSSTTEEEEEEE- CS
  Ribosomal_L3 321 kndfilvkGsvpGpkkrlvklrks 344
                   + +++lvkG+vpG     + ++++
    CTQ30299.1 183 ERNLLLVKGAVPGATGSDLIVKPA 206
                   56899********98777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1673.61
//
Query:       CTQ30300.1  [L=103]
Description: 30S ribosomal protein S10 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-35  120.9   0.1    2.3e-35  120.7   0.1    1.0  1  Ribosomal_S10  Ribosomal protein S10p/S20e


Domain annotation for each model (and alignments):
>> Ribosomal_S10  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.1   1.3e-39   2.3e-35       1      97 [.       7     100 ..       7     101 .. 0.99

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 1.3e-39
                    EEEEEESSHHHHHHHHHHHHHHTTSSS-EE---EEEEEEEEEEEEE--SS--S--EEEEEEEEEEEEEEEE.E-HHHHHHHS-...S---SS-EEE CS
  Ribosomal_S10   1 rirlkSydsklLekavkkivraakelgikvkgpvplPtkrkrvtvlksphvdkksreqfeirthkRlidisdatketidtllkllqlnlpegVsve 96 
                    rirlk++d++l+++++ +iv++ak++g++v+gp+plPt+++r+tvl sphv+k+ r+q+eirthkRl+di ++t++t+d+l++   l+l +gV+v+
     CTQ30300.1   7 RIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMR---LDLAAGVDVQ 99 
                    8**********************************************************************************...*********9 PP

                    E CS
  Ribosomal_S10  97 v 97 
                    +
     CTQ30300.1 100 I 100
                    7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 914.47
//
Query:       CTQ30301.1  [L=109]
Description: hypothetical protein CH1034_340045 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 878.69
//
Query:       CTQ30302.1  [L=173]
Description: Leader peptidase HopD [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.3e-21   75.3  10.8    6.7e-21   74.7   4.9    2.2  2  Peptidase_A24  Type IV leader peptidase family
  ------ inclusion threshold ------
       0.22   11.8   3.0       0.17   12.1   0.7    1.9  1  YesK           YesK-like protein


Domain annotation for each model (and alignments):
>> Peptidase_A24  Type IV leader peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   4.9   7.5e-25   6.7e-21       6     104 ..      26     127 ..      12     130 .. 0.90
   2 !    4.2   0.3    0.0062        55      78      94 ..     155     171 ..     154     173 .] 0.84

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 7.5e-25
  Peptidase_A24   6 illvlsviDldtrtlpdeltlpllllgvlfaqllllglpnlaqavlgalvgalvlllislvdeq.....amGgGDvklaavlgaflgwerlllavl 96 
                    + ++l+ +Dl++ +lpd+ t+pll+ g+lf   l l + +l +av+ga++g+l l +i+ ++++     ++G+GD+k +a+lga+ gw  l+ +vl
     CTQ30302.1  26 LTVALCHQDLRHGLLPDRYTCPLLWSGLLFY--LCLAPHQLHDAVWGAIAGYLSLAAIYWLYRGirgyeGLGYGDIKYLAALGAWHGWRLLPQLVL 119
                    4567899***********************8..799*********************855555556677*************************** PP

  Peptidase_A24  97 vaillgav 104
                    va+ll+++
     CTQ30302.1 120 VASLLAGI 127
                    ***99876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0062
  Peptidase_A24  78 laavlgaflgwerllla 94 
                    ++a++g+++gw++l  +
     CTQ30302.1 155 FLAAAGFWCGWQTLASL 171
                    689*********99765 PP

>> YesK  YesK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.7   1.9e-05      0.17      36      72 ..      73     109 ..      60     114 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.9e-05
        YesK  36 lillslivvlysllvvGGweGmglgilgvsvligtll 72 
                    lsl+++      ++G+eG+g+g +     +g++ 
  CTQ30302.1  73 AGYLSLAAIYWLYRGIRGYEGLGYGDIKYLAALGAWH 109
                 55799**999999************888887777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      192  (0.0107089); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1354.60
//
Query:       CTQ30303.1  [L=158]
Description: bacterioferritin, iron storage and detoxification protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-38  130.0   2.5    7.3e-38  129.7   2.5    1.1  1  Ferritin  Ferritin-like domain
  ------ inclusion threshold ------
       0.01   15.5   0.0      0.019   14.6   0.0    1.4  1  DUF1241   Protein of unknown function (DUF1241)


Domain annotation for each model (and alignments):
>> Ferritin  Ferritin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.7   2.5   8.1e-42   7.3e-38       2     141 ..       9     143 ..       8     144 .. 0.97

  Alignments for each domain:
  == domain 1  score: 129.7 bits;  conditional E-value: 8.1e-42
                 HHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS....SHHHHHHC-SSSSCS.SHHHHHHHHHHHHHHHHHHH CS
    Ferritin   2 kaLneqladeltaayqylamawyvkgpgleglaeffdeqaeeerehadklaerilalGgtpvltraeleeieapkefg.sveevleaalehekkvtesl 99 
                   Ln++l +el+a++qy+ +a+++k++gl +l+   ++++++e++hadk +eril+l+g p+l++     i      g +vee+l+ +l +e +  ++l
  CTQ30303.1   9 SYLNKLLGNELVAINQYFLHARMFKNWGLMRLNDTEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLGI------GeDVEEMLRSDLRLELEGAQNL 101
                 68********************************************************************9......88******************** PP

                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Ferritin 100 relielaeeegDpatadfledfleeqeeheweleallekler 141
                 re+i++a++++D++++d++ ++l+++e h+++le+ l+ + +
  CTQ30303.1 102 REAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDLIGK 143
                 *************************************98865 PP

>> DUF1241  Protein of unknown function (DUF1241)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.1e-06     0.019      24      80 ..      94     150 ..      81     156 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-06
     DUF1241  24 dvaaaqtLraalskaekesPgltqdlvkgllkkkelsvnlneslLrlqgtadteeyk 80 
                 +++ aq+Lr+a++ a++ +  ++ d++  +l+++e +++  e+ L l g+   ++y 
  CTQ30303.1  94 ELEGAQNLREAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDLIGKIGLQNYL 150
                 47889******************************************9998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1284.59
//
Query:       CTQ30304.1  [L=64]
Description: bacterioferritin-associated ferredoxin [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-14   53.1   0.2    3.9e-14   52.7   0.2    1.2  1  Fer2_BFD  BFD-like [2Fe-2S] binding domain


Domain annotation for each model (and alignments):
>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.2   2.2e-18   3.9e-14       1      50 [.       2      51 ..       2      52 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 2.2e-18
    Fer2_BFD  1 iVCrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiLa 50
                +VC C+gv++++Ir+++r+ + ++++++++++ +g++Cg+C++a++e+++
  CTQ30304.1  2 YVCLCNGVSDKKIRQVVRQFQPQSFQQLRKFVPVGNQCGKCVRAAREVME 51
                7****************88779*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 470.18
//
Query:       CTQ30305.1  [L=59]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 469.70
//
Query:       CTQ30306.1  [L=704]
Description: protein chain elongation factor EF-G, GTP-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-67  226.2   0.1    3.9e-67  225.6   0.1    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    1.2e-44  151.0   0.0    2.6e-44  149.9   0.0    1.6  1  EFG_IV       Elongation factor G, domain IV
    4.3e-34  116.4   0.0    9.6e-34  115.3   0.0    1.6  1  EFG_II       Elongation Factor G, domain II
    1.2e-28   99.0   0.0      3e-28   97.7   0.0    1.8  1  EFG_C        Elongation factor G C-terminus
    2.4e-16   59.9   0.2    6.5e-16   58.5   0.2    1.8  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    8.3e-07   28.9   0.2    3.1e-06   27.0   0.0    1.9  2  RF3_C        Class II release factor RF3, C-terminal domain
  ------ inclusion threshold ------
       0.13   12.0   0.0        0.2   11.3   0.0    1.2  1  Slu7         Pre-mRNA splicing Prp18-interacting factor


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.6   0.1   1.5e-70   3.9e-67       2     194 .]       9     288 ..       8     288 .. 0.96

  Alignments for each domain:
  == domain 1  score: 225.6 bits;  conditional E-value: 1.5e-70
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE.....TTCSSEEEEEEEESSSGGGHHHHHHHHHT-S CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle.....ketkkylinliDtPGHvdFskevirglrvlD 95 
                 r+rnigi +h+D+GKtT+t+r+l++tg  +k ge++++++++D++++E+ergiTi+saa++ +     k+++ +++n+iDtPGHvdF+ ev+r++rvlD
  CTQ30306.1   9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFwsgmaKQYEPHRVNIIDTPGHVDFTIEVERSMRVLD 107
                 689**********************************9****************************988****************************** PP

                 EEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH......................................... CS
    GTP_EFTU  96 gavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk......................................... 153
                 gav+v +av Gv+pq+e+v+r+a+k++vp+i f+NKmDr++a++ ++v ++k++l ++                                         
  CTQ30306.1 108 GAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVGQIKTRLGANpvplqlaigaeegftgvvdlvkmkainwndadqgvtfeyed 206
                 *******************************************************999***************************************** PP

                 ..........................................HHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSHH CS
    GTP_EFTU 154 ..........................................eeklekygekgekevpvvfgSalkgegvktllealvellps 194
                                                           +++l++ + ++ +++ v +gSa+k++gv+++l+a++++lps
  CTQ30306.1 207 ipadmqdladewhqnliesaaeaseelmekylggeelteeeiKKALRQRVLNN-EIILVTCGSAFKNKGVQAMLDAVIDYLPS 288
                 ********************999999999999999999777777777777777.5**************************96 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0     1e-47   2.6e-44       1     121 []     486     609 ..     486     609 .. 0.98

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 1e-47
                 TCCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTT...TTSSEEEEE--STCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE-- CS
      EFG_IV   1 pqVayrEtirkpvkereeklkkqsggdgqyakvileiePle...egsgnefvdetkggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslh 96 
                 pqVayrE+ir +v+++e+k++kqsgg+gqy++v+++++Ple   + +g+ef++++kgg++p eyi+av+kG+qe+lk Gplag+pv+d+ ++L+ gs+h
  CTQ30306.1 486 PQVAYREAIRAKVTDIEGKHAKQSGGRGQYGHVVIDMYPLEpgsNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYH 584
                 8****************************************887789**************************************************** PP

                 TTTC-HHHHHHHHCHHHHHHHHCC- CS
      EFG_IV  97 evdsseaafkpaarralkeallkAs 121
                 +vdsse+afk aa+ a+ke+++kA+
  CTQ30306.1 585 DVDSSELAFKLAASIAFKEGFKKAK 609
                 ***********************96 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.0   3.7e-37   9.6e-34       1      75 []     411     485 ..     411     485 .. 0.99

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 3.7e-37
      EFG_II   1 fPePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelgk 75 
                 fPePvis+a+epk+kad++k++ aL rl++EDp++rv +dee+++ti++GmGelHl+i+v+r+kre++ve+++gk
  CTQ30306.1 411 FPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGK 485
                 8**********************************************************************9985 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   1.2e-31     3e-28       1      87 [.     611     696 ..     611     698 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 1.2e-31
                 EEEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHHH CS
       EFG_C   1 vllEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdkld 87 
                 vllEPi+kve+e+pee++g+vi+dls+rrG + + e++  + v+i+ae+Pl+e++g+at+LrslTkG++s++mef +Y+ +p+++++
  CTQ30306.1 611 VLLEPIMKVEVETPEENTGDVIGDLSRRRGMLRGQESE-VTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDDAPNNVAQ 696
                 59************************************.********************************************9987 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.2   2.6e-19   6.5e-16       1      74 []     331     398 ..     331     398 .. 0.95

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 2.6e-19
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G +++ rvysG+++ Gd+v +  + +  +   +r +++  +h++++e++++++aG+i+a++gl+d + +Gdtl+
   CTQ30306.1 331 GNLTFFRVYSGVVNSGDTVLN--SVKAAR---ERFGRIVQMHANKREEIKEVRAGDIAAAIGLKD-VTTGDTLC 398
                  6689*****************..988677...*********************************.*******8 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         1   2.7e+03      30      57 ..     240     267 ..     226     268 .. 0.85
   2 !   27.0   0.0   1.2e-09   3.1e-06      15      92 ..     420     497 ..     411     519 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1
                 HHHHHHCTSSEEEEET.TSS-EEEEESS CS
       RF3_C  30 leqLaeEGavqvfkeeeageelilgaVG 57 
                  e+L+eE + + ++++  ++e+il + G
  CTQ30306.1 240 GEELTEEEIKKALRQRVLNNEIILVTCG 267
                 5899999999999999999999998877 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 1.2e-09
                 EEESSGGGHHHHHHHHHHHHHCTSSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE-S CS
       RF3_C  15 vrlkdplkrkqlrkgleqLaeEGavqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwvese 92 
                 v+ k    + ++  +l  La+E       ++e+++++i++ +G+L ++++ +R+k+E++ve+++ + ++ +   ++++
  CTQ30306.1 420 VEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYREAIRAK 497
                 55555666666777788999988654444455899****************************998888777776543 PP

>> Slu7  Pre-mRNA splicing Prp18-interacting factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     8e-05       0.2     158     225 ..     184     251 ..     178     273 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8e-05
        Slu7 158 efaklqlfAweaeekGedvhlqAnPtkaellakefkekkeklkeekkksilekYggeehlkakpkell 225
                 ++ k++++ w+++++G++ +++  P  ++ la e +++  + ++e +++++ekY g e+l++++ + +
  CTQ30306.1 184 DLVKMKAINWNDADQGVTFEYEDIPADMQDLADEWHQNLIESAAEASEELMEKYLGGEELTEEEIKKA 251
                 67789999**********************************************77776655443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 5094.67
//
Query:       CTQ30307.1  [L=156]
Description: 30S ribosomal protein S7 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-64  216.1   2.6    1.7e-64  216.0   2.6    1.0  1  Ribosomal_S7  Ribosomal protein S7p/S5e
  ------ inclusion threshold ------
      0.023   13.4   0.0      0.029   13.1   0.0    1.2  1  ArgJ          ArgJ family


Domain annotation for each model (and alignments):
>> Ribosomal_S7  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.0   2.6   1.9e-68   1.7e-64       1     149 []       1     149 [.       1     149 [. 0.99

  Alignments for each domain:
  == domain 1  score: 216.0 bits;  conditional E-value: 1.9e-68
                   ..XSSSSCT------SSTTSBHHHHHHHHHSBTTBHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHCS-SEEEEEEBSSSSBEEEEEEE-HHHHH CS
  Ribosomal_S7   1 msrrkkakkrevlpdpkynselveklinklmkdGkkslAekivygaldiieektkkdplevleeAlenvkPrvevksrrvGGatyqvpvevrpkRrq 97 
                   m+rr+ + +r++lpdpk++sel++k++n lm dGkks+Ae+ivy+al+ ++++++k  le +e Alenv+P vevksrrvGG+tyqvpvevrp Rr+
    CTQ30307.1   1 MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAETIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRN 97 
                   89*********************************************************************************************** PP

                   HHHHHHHHHHHSTSSSS-HHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTG CS
  Ribosomal_S7  98 alAlrwiieaarkrkeksmaekLaeElidAaegegaavkkreethrmAeanr 149
                   alA+rwi+eaarkr +ksma +La+El+dAa ++g+avkkre++hrmAean+
    CTQ30307.1  98 ALAMRWIVEAARKRGDKSMALRLANELTDAADNKGTAVKKREDVHRMAEANK 149
                   ***************************************************8 PP

>> ArgJ  ArgJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.3e-06     0.029     196     260 ..      27      92 ..      17     109 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.3e-06
                 GGGB-SSS---SS-EEEEEE--T.TTT..STTHHHHHHHHHHHHHHHHHHHHHTSTT-S-EEEEEEE CS
        ArgJ 196 FnsisvDgdtSTnDtvlllAnga.aeee.eedleefeealtevlqeLakqivrDGEGatklveveVk 260
                  n + vDg+ ST  t++  A  + a+++ +++le+fe al++v  ++  +  r   G+t  v veV+
  CTQ30307.1  27 VNILMVDGKKSTAETIVYSALETlAQRSgKSELEAFEVALENVRPTVEVKSRRV-GGSTYQVPVEVR 92 
                 58999***************99954444699**********9977665554443.356666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1191.34
//
Query:       CTQ30308.1  [L=124]
Description: 30S ribosomal protein S12 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-43  145.4   1.0    5.4e-43  145.2   1.0    1.0  1  Ribosom_S12_S23  Ribosomal protein S12/S23
  ------ inclusion threshold ------
        0.1   13.3   0.0       0.19   12.5   0.0    1.4  1  Ribosomal_S12    Ribosomal protein S12


Domain annotation for each model (and alignments):
>> Ribosom_S12_S23  Ribosomal protein S12/S23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.2   1.0   6.1e-47   5.4e-43       1     114 []      12     123 ..      12     123 .. 0.98

  Alignments for each domain:
  == domain 1  score: 145.2 bits;  conditional E-value: 6.1e-47
                      --------S-TSSTTSSEEEEEEEEEEEE---TT--S-EEEEEEEET.TSEEEEEEE-SSS..----TT-EEEEEE--.....BTTSTTEEEEB CS
  Ribosom_S12_S23   1 rkelrkktksdalegapqkrGvvlekvtveakkPnsAlRkvvrvrLikngkevtafipgegalnfldEhdevlvrGirrkgkavkDlpGvrykv 94 
                      r+++++k++++ale++pqkrGv+++++t+++kkPnsAlRkv+rvrL+ ng+evt++i+geg  ++l+Eh+++l+rG+r     vkDlpGvry++
       CTQ30308.1  12 RARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLT-NGFEVTSYIGGEG--HNLQEHSVILIRGGR-----VKDLPGVRYHT 97 
                      578899*****************************************.*************..***************.....*********** PP

                      ET....S---T..SSSTTTTT----T CS
  Ribosom_S12_S23  95 vk....vagvs..lkalskykkekpk 114
                      v+    ++gv+  ++a+sky+ ++pk
       CTQ30308.1  98 VRgaldCSGVKdrKQARSKYGVKRPK 123
                      ***********999**********97 PP

>> Ribosomal_S12  Ribosomal protein S12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.1e-05      0.19      21      84 ..      36      97 ..      27      99 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
  Ribosomal_S12 21 lvlyvsprlpssGnrrilvaifllfnivllllvffccvlfvvlsflfiveGGGfidlpglkyfs 84
                    v+  +p+ p s  r+++ +   l n + + +  +     +   ++ ++ GG   dlpg++y++
     CTQ30308.1 36 RVYTTTPKKPNSALRKVCRV--RLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHT 97
                   35667899999999998864..3444444445455555788888999***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 957.40
//
Query:       CTQ30309.1  [L=95]
Description: methylsulfur transfer protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-26   90.2   0.1    7.4e-26   90.1   0.1    1.0  1  DsrH      DsrH like protein
  ------ inclusion threshold ------
      0.034   14.6   0.1       0.11   12.9   0.0    1.8  2  DUF4350   Domain of unknown function (DUF4350)


Domain annotation for each model (and alignments):
>> DsrH  DsrH like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.1   8.3e-30   7.4e-26       2      85 ..       8      90 ..       7      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 8.3e-30
                -GGGS.-HHHHHHT--TT-EEEE-GGGGGGGBTTBTTHHHHHTSSSEEEEEHHHHHHTT-TTSB-TTSEEE-HHHHHHHHHHSS CS
        DsrH  2 SpfesnalksclrllqegDavlLieDgVyaalkgsrllkalkeasvklyaLkeDleARGlteqlsegvkvidydgfVeltvkhk 85
                Sp++  +++++lrl+++gD+++L++DgV+aa+++ r+l+ l++a+++ly+L++D++ARGl  q++++v  ++y++fV+ltvkh 
  CTQ30309.1  8 SPWHA-DIAAMLRLMEHGDDLVLLSDGVTAAIADGRFLEILQSAPITLYVLQDDVDARGLAGQIADSVGRVSYTDFVRLTVKHA 90
                99999.*****************************************************************************7 PP

>> DUF4350  Domain of unknown function (DUF4350)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.2e-05      0.11      49      68 ..       9      30 ..       3      31 .. 0.83
   2 ?   -1.0   0.0      0.28   2.5e+03      12      29 ..      45      62 ..      41      80 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.2e-05
     DUF4350 49 e..eelaallewvarGntlvla 68
                +  +++aa+l+++++G++lvl+
  CTQ30309.1  9 PwhADIAAMLRLMEHGDDLVLL 30
                3459****************98 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.28
     DUF4350 12 elLeaqGvevrrvrkpfd 29
                e+L ++ +++++ ++  d
  CTQ30309.1 45 EILQSAPITLYVLQDDVD 62
                677777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 767.05
//
Query:       CTQ30310.1  [L=119]
Description: methylsulfur transfer protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-23   81.5   0.0    6.1e-23   81.4   0.0    1.0  1  DrsE      DsrE/DsrF-like family


Domain annotation for each model (and alignments):
>> DrsE  DsrE/DsrF-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   3.4e-27   6.1e-23       1     117 []       2     119 .]       2     119 .] 0.97

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 3.4e-27
                 -EEEEEE-S-TTTBSHHHHHHHHHHHHHTTT-EEEEEE-GGGGGGGBS---TGGGTS---GGGGGGCGGGT.-EEEEEHHHHHHTT--GGG.E-T--EE CS
        DrsE   1 kkvfilvtggpygseaarealelalaaaalghevsvffygdGvllllkgqtanpadeknlaellkalkeyg.vklyvCgqaakargldede.dlgvgve 97 
                 k+v+++++++p+gs+a+re+l++ la +al  ++ vff gdGv++ll +q + +   +++++++k l+ y+  + ++C+ +a +rgld+++ ++ v+ve
  CTQ30310.1   2 KRVAFVFSSAPHGSAAGREGLDALLATSALTDDIGVFFVGDGVFQLLPEQRPGAVLARDYIATFKLLSLYDiDQCWLCADSARERGLDPATpWV-VDVE 99 
                 789*************************************************************************************887777.8*** PP

                 EE-HHHHHHHHHH-SEEEE- CS
        DrsE  98 vsglgelaelqnegdrvitf 117
                   +  +l   ++e d +++f
  CTQ30310.1 100 CLAPDALRARLHEFDVILRF 119
                 ***************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       211  (0.0117686); expected 358.6 (0.02)
Passed bias filter:                      195  (0.0108762); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 1029.50
//
Query:       CTQ30311.1  [L=128]
Description: methylsulfur transfer protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-27   96.3   0.0    1.7e-27   96.1   0.0    1.0  1  DrsE      DsrE/DsrF-like family


Domain annotation for each model (and alignments):
>> DrsE  DsrE/DsrF-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.0   9.4e-32   1.7e-27       1     117 []       1     128 []       1     128 [] 0.96

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 9.4e-32
                 -EEEEEE-S-TTTBSHHHHHHHHHHHHHTTT-EEE.EEE-GGGGGGGBS---TGGGTS---GGGGGGCGG.GT-EEEEEHHHHHHTT--GGG....... CS
        DrsE   1 kkvfilvtggpygseaarealelalaaaalghevs.vffygdGvllllkgqtanpadeknlaellkalke.ygvklyvCgqaakargldede....... 90 
                 +++++ vtg+ yg++ a++a ++a+a+++ ghe++ vffy +Gvl++++  ta+++de +l+  ++ l++ +gv l++C++aa +rg++++        
  CTQ30311.1   1 MRFALTVTGPAYGTQQASSAWQFAQAVLQEGHELAcVFFYREGVLNANQ-LTAPASDEFDLVRGWQSLHDeHGVALHICVAAALRRGVTDEReaqqlal 98 
                 789999*******************************************.********************9******************666***9998 PP

                 ...E-T--EEEE-HHHHHHHHHH-SEEEE- CS
        DrsE  91 ...dlgvgvevsglgelaelqnegdrvitf 117
                    +l+ g+++sglg+lae+++ +dr ++f
  CTQ30311.1  99 pghNLQPGFTLSGLGALAEAALTCDRMVQF 128
                 8887767*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 1131.47
//
Query:       CTQ30312.1  [L=240]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-36  124.2   0.1      4e-36  123.4   0.1    1.4  1  PAS_6          YheO-like PAS domain
    6.6e-19   67.8   0.3    1.1e-18   67.1   0.3    1.3  1  HTH_22         HTH domain
    8.4e-06   25.4   0.0    1.8e-05   24.4   0.0    1.6  1  HTH_23         Homeodomain-like domain
    0.00029   20.8   0.1      0.001   19.1   0.1    1.9  2  HTH_7          Helix-turn-helix domain of resolvase
     0.0041   16.9   0.1     0.0065   16.2   0.1    1.3  1  DUF658         Protein of unknown function (DUF658)
     0.0045   17.1   0.0      0.008   16.3   0.0    1.4  1  HTH_17         Helix-turn-helix domain
  ------ inclusion threshold ------
      0.026   14.3   0.1      0.055   13.3   0.1    1.5  1  HTH_10         HTH DNA binding domain
      0.031   14.3   0.0      0.063   13.3   0.0    1.6  1  HTH_29         Winged helix-turn helix
      0.056   13.2   0.0       0.13   12.0   0.0    1.6  1  dCache_1       Cache domain
      0.086   12.4   0.0       0.17   11.5   0.0    1.5  1  GerE           Bacterial regulatory proteins, luxR family
        0.1   12.7   0.0       0.22   11.7   0.0    1.5  1  Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix do
       0.12   12.4   0.1       0.37   10.9   0.1    1.8  1  DUF3791        Protein of unknown function (DUF3791)
       0.14   12.3   0.0       0.25   11.5   0.0    1.4  1  HTH_28         Helix-turn-helix domain
       0.14   11.9   0.0       0.28   11.0   0.0    1.5  1  MerR           MerR family regulatory protein


Domain annotation for each model (and alignments):
>> PAS_6  YheO-like PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.1   3.1e-39     4e-36       1     109 [.      29     137 ..      29     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 123.4 bits;  conditional E-value: 3.1e-39
       PAS_6   1 LeslkqlveglaellgencEvvlhdledpehsivaiaNghvtgRkvGdpltdlvlellkeeeeeeedvlvnyktktkdgkilksstifirdekgkligl 99 
                 L+s++++v+gla l+g++cE+vlh+l+d++ s + iaNg++tgR++G+p+tdl+l++l++++  +++v + y+t++k+g  +ks+ti ir+ ++++igl
  CTQ30312.1  29 LKSYEAVVDGLAMLIGSHCEIVLHSLQDLKCSAIRIANGEHTGRQIGSPITDLALRMLHDMTGADSSVSKCYFTRAKSGVLMKSVTIAIRNRDHRVIGL 127
                 799************************************************************************************************ PP

       PAS_6 100 LCiNldlskl 109
                 LCiN++l+ +
  CTQ30312.1 128 LCINMNLDVP 137
                 ******9876 PP

>> HTH_22  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.3   8.2e-22   1.1e-18       2      63 .]     171     228 ..     170     228 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 8.2e-22
      HTH_22   2 lesiieevladlgkpverltkeekieivraLdekGiFllkgavekvAekLgiSraTvYryLr 63 
                 le +ieev ad++++    +++++++iv +L+ekGiF++k+a+++vA++L+iS++TvY y+r
  CTQ30312.1 171 LEFTIEEVNADRSVS----NNAKNRQIVLNLYEKGIFDIKDAINQVADRLNISKHTVYLYIR 228
                 67789**********....*****************************************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.4e-08   1.8e-05       4      49 ..     188     238 ..     185     239 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.4e-08
      HTH_23   4 ereRlrillllae.....GlsvreIAreLgvsrrTvyrwlkryreeG.legl 49 
                 +++R+ +l l+ +     ++ + ++A++L++s++Tvy +++ + ++G + gl
  CTQ30312.1 188 AKNRQIVLNLYEKgifdiKDAINQVADRLNISKHTVYLYIRQF-KSGdFQGL 238
                 67788888888877888999999********************.56647776 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.7   8.6e+03      21      30 ..      75      84 ..      73      85 .. 0.82
   2 !   19.1   0.1   8.1e-07     0.001      14      41 ..     194     226 ..     185     229 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.7
                T--STTTSSS CS
       HTH_7 21 GisiskIAke 30
                G++i+++A +
  CTQ30312.1 75 GSPITDLALR 84
                8999999965 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 8.1e-07
                 GGSSTTTT-.....-STTTSSSS---SSSS--S CS
       HTH_7  14 vvkLleeGi.....siskIAkevnisRsTvYRy 41 
                 v+ L+e+Gi     +i+++A+++nis+ TvY y
  CTQ30312.1 194 VLNLYEKGIfdikdAINQVADRLNISKHTVYLY 226
                 667788877666668****************66 PP

>> DUF658  Protein of unknown function (DUF658)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   5.1e-06    0.0065      70     112 ..     188     230 ..     171     236 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.1e-06
      DUF658  70 rklpasvydyydkgefiitgtareisqflkigkhnvysyiqvg 112
                  k    v + y+kg f i  +  ++++ l+i kh vy yi+  
  CTQ30312.1 188 AKNRQIVLNLYEKGIFDIKDAINQVADRLNISKHTVYLYIRQF 230
                 5556678999******************************765 PP

>> HTH_17  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.3e-06     0.008       4      24 ..     209     229 ..     209     240 .] 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.3e-06
      HTH_17   4 veEaAelLgvsrstvyrlirr 24 
                 ++++A+ L++s++tvy +ir+
  CTQ30312.1 209 INQVADRLNISKHTVYLYIRQ 229
                 689****************83 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.3e-05     0.055       4      46 ..     189     229 ..     188     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.3e-05
      HTH_10   4 kqlevlklAyemGYFdyPRrvtlkeLAkelGIskstlsehLrk 46 
                 k+++++ + ye+G Fd      ++++A++l+Isk t++ ++r+
  CTQ30312.1 189 KNRQIVLNLYEKGIFDIKDA--INQVADRLNISKHTVYLYIRQ 229
                 78889999999999999765..579*************99997 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.9e-05     0.063       3      44 ..     192     238 ..     190     240 .] 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.9e-05
      HTH_29   3 qallllaeGvs.....tvsqiAkllglsrrtvyrwlkrfeegGlaal 44 
                 q++l+l+e +       + q+A +l++s+ tvy +++ f  g  ++l
  CTQ30312.1 192 QIVLNLYEKGIfdikdAINQVADRLNISKHTVYLYIRQFKSGDFQGL 238
                 778888887558888889**********************9987777 PP

>> dCache_1  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0    0.0001      0.13     120     169 ..      93     144 ..      64     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0001
    dCache_1 120 kpvisdpyvdqt.ggkpvitiavpiyddsgkfiGvlaadldldn.lqdllsn 169
                 ++ +s+ y+  + +g+++ +++++i++++ ++iG l+++++ld+ +++++s+
  CTQ30312.1  93 DSSVSKCYFTRAkSGVLMKSVTIAIRNRDHRVIGLLCINMNLDVpFSQIMST 144
                 667888886555679************99*************9866666665 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.17      21      40 ..     210     229 ..     207     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
                 HHHHHHHTS-HHHHHHHHHH CS
        GerE  21 keIAeelniSekTVkvhksn 40 
                 +++A++lniS+ TV  ++++
  CTQ30312.1 210 NQVADRLNISKHTVYLYIRQ 229
                 79************999875 PP

>> Phage_CI_repr  Bacteriophage CI repressor helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00017      0.22      17      41 ..     211     234 ..     203     236 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
                    HHHCCTT--HHHHHHHHHSSS--HH CS
  Phage_CI_repr  17 eLAdlLgiakssvstwvrRdffPgd 41 
                    + Ad+L+i+k++v+  + R f +gd
     CTQ30312.1 211 QVADRLNISKHTVYL-YIRQFKSGD 234
                    67***********95.556666666 PP

>> DUF3791  Protein of unknown function (DUF3791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00029      0.37       6      29 ..     208     231 ..     202     235 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
     DUF3791   6 cIeeyarklglsgkevykllkksg 29 
                 +I+++a++l++s   vy ++++++
  CTQ30312.1 208 AINQVADRLNISKHTVYLYIRQFK 231
                 69******************9987 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0002      0.25      13      44 ..     207     238 ..     191     240 .] 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0002
      HTH_28  13 hsvreaArelgisrrtvyrWikryeegGiagL 44 
                 ++++++A +l+is  tvy  i+++ +g ++gL
  CTQ30312.1 207 DAINQVADRLNISKHTVYLYIRQFKSGDFQGL 238
                 37889*******************99656777 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00022      0.28       2      22 ..     209     229 ..     208     229 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
                 HHHHHHHHTTTHHHHHHHHHT CS
        MerR   2 IgevAeltGvsprtLRyYEre 22 
                 I++vA+++++s +t+  Y r+
  CTQ30312.1 209 INQVADRLNISKHTVYLYIRQ 229
                 99**************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.33
# Mc/sec: 2149.03
//
Query:       CTQ30313.1  [L=276]
Description: FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-29  102.6   0.0    9.8e-28   96.3   0.0    2.5  2  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase
    2.8e-22   79.5   8.5    5.4e-22   78.6   8.5    1.5  1  FKBP_N    Domain amino terminal to FKBP-type peptidyl-prolyl 
  ------ inclusion threshold ------
       0.11   12.7   0.6       0.26   11.5   0.6    1.6  1  XhlA      Haemolysin XhlA
       0.14   12.1   2.2          9    6.2   0.0    2.4  2  DUF4827   Domain of unknown function (DUF4827)
       0.92    9.9   7.2       0.23   11.9   3.2    2.0  2  DUF3811   YjbD family (DUF3811)


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.021        76      22      52 ..      58      88 ..      39     100 .. 0.85
   2 !   96.3   0.0   2.7e-31   9.8e-28       3      94 .]     161     247 ..     159     247 .. 0.96

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.021
                SSEEEEHCCHTSEEEEETTSSSSCHHHHHHH CS
      FKBP_C 22 gkvfdssrsrakplefkvGsgqvikGfeeal 52
                g+ +++s++++++l +k+++ q+i G ++a 
  CTQ30313.1 58 GRYMENSLKEQEKLGIKLDKAQLIAGVQDAF 88
                777899999*****************99875 PP

  == domain 2  score: 96.3 bits;  conditional E-value: 2.7e-31
                 CBB-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   3 eeakegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                   +k++dtV v+ykg+l dgk+fd+s++r++pl+f+++   vi+G+ e+l+++k+G+k +l ipp+laYg++g+ g  ip+n+tLvF+veLl
  CTQ30313.1 161 A-PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPDLAYGKTGVPG--IPANSTLVFDVELL 247
                 4.899*********************************..7*********************************66..************97 PP

>> FKBP_N  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   8.5   1.5e-25   5.4e-22       2      97 .]      47     153 ..      46     153 .. 0.87

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 1.5e-25
      FKBP_N   2 dkvsYalGlsigqqlkaq.......gkeldkdavlaGlkdalkgkskltdeeiqevlqal....qeklqekqeeeaeknkaegeaFlaenkkkeGVktt 89 
                 +k +YalG+s+g++++++       g +ldk++++aG++da+++kskl+d+ei+++lqa+    ++++q+k+e++a +n+a+g+aF  +++k++GVkt 
  CTQ30313.1  47 QKSAYALGASLGRYMENSlkeqeklGIKLDKAQLIAGVQDAFADKSKLSDQEIEQTLQAFetrvKTAAQQKMEKDATENEAKGKAFRDNFAKEKGVKTS 145
                 899*********9954444444566899********************9***********44433355666799************************* PP

      FKBP_N  90 esGLqYkV 97 
                 + GL+YkV
  CTQ30313.1 146 KTGLLYKV 153
                 *******9 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   7.2e-05      0.26       1      40 [.      98     135 ..      98     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.2e-05
        XhlA   1 eikerlerietkldnleervdkleekaaeaeekiknleed 40 
                 ei++ l+  et++++  ++  k e++a+e e+k k   ++
  CTQ30313.1  98 EIEQTLQAFETRVKTAAQQ--KMEKDATENEAKGKAFRDN 135
                 79****************8..************9987665 PP

>> DUF4827  Domain of unknown function (DUF4827)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   1.3    0.0092        33       7      89 ..      87     178 ..      84     195 .. 0.69
   2 ?    6.2   0.0    0.0025         9     136     162 ..     197     223 ..     181     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0092
     DUF4827   7 tYaemkeeekkaInkfikkenikviseeefeaqdstTdvek...........neyvlfesnGvYmqivdkGkgeklkkgetaevlvRfteinll 89 
                  +a++ +  ++ I++ ++  + +v + ++ + ++++T+ e+           ++ v+ +++G+  ++ ++G g+  + +++ +v+v ++ + + 
  CTQ30313.1  87 AFADKSKLSDQEIEQTLQAFETRVKTAAQQKMEKDATENEAkgkafrdnfakEKGVKTSKTGLLYKVEKEGAGD--APKDSDTVVVNYKGTLID 178
                 6888888888889998888666666665555555555442223333333333999*******999********9..566677788888777665 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0025
     DUF4827 136 tsvpsGwlvpLkyvkeiAkVrLiVpsk 162
                   v  Gw   Lk +k+  k++L++p +
  CTQ30313.1 197 DGVIPGWTEGLKNIKKGGKIKLVIPPD 223
                 45788*******************965 PP

>> DUF3811  YjbD family (DUF3811)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.78   2.8e+03      52      77 ..      26      52 ..      20      59 .. 0.65
   2 ?   11.9   3.2   6.4e-05      0.23      12      71 ..      66     125 ..      60     137 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.78
     DUF3811 52 reaaakkaraekkkekakpd.ssetfs 77
                 + a+k+a a+  k+++k+d +++++ 
  CTQ30313.1 26 ADTATKAAPAAESKSAFKNDdQKSAYA 52
                455667777777777777765666665 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 6.4e-05
     DUF3811  12 seqrevktlLdrarkklgreLtNaEqNrikdeaidkimaereaaakkaraekkkekakpd 71 
                 +eq ++ ++Ld+a+   g + + a++ ++ d+ i++  ++ e   k a+++k ++ a+++
  CTQ30313.1  66 KEQEKLGIKLDKAQLIAGVQDAFADKSKLSDQEIEQTLQAFETRVKTAAQQKMEKDATEN 125
                 58999999******************************************9988777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1332  (0.074293); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.34
# Mc/sec: 2456.96
//
Query:       CTQ30314.1  [L=72]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-23   81.7   3.7    4.6e-23   81.6   3.7    1.0  1  SlyX          SlyX
     0.0065   16.4   0.3     0.0065   16.4   0.3    1.6  2  Sugarporin_N  Maltoporin periplasmic N-terminal extension
  ------ inclusion threshold ------
      0.012   16.0   1.2      0.014   15.8   1.2    1.1  1  DUF641        Plant protein of unknown function (DUF641)
      0.014   14.8   2.0      0.018   14.4   2.0    1.1  1  Tropomyosin   Tropomyosin
      0.026   15.0   0.4       0.03   14.8   0.4    1.1  1  DUF16         Protein of unknown function DUF16
      0.034   14.2   1.3      0.067   13.3   1.3    1.5  1  Cep57_CLD_2   Centrosome localisation domain of PPC89
      0.056   13.4   1.1      0.077   13.0   1.1    1.2  1  Prefoldin_2   Prefoldin subunit
      0.063   13.0   0.4      0.075   12.8   0.4    1.1  1  QWRF          QWRF family
      0.086   11.9   0.3      0.098   11.7   0.3    1.0  1  Atg14         Vacuolar sorting 38 and autophagy-related subun
      0.089   13.1   0.2      0.098   12.9   0.2    1.0  1  YgbB          YgbB family
       0.15   11.3   0.4       0.16   11.2   0.4    1.0  1  MPS2          Monopolar spindle protein 2


Domain annotation for each model (and alignments):
>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   3.7   2.8e-26   4.6e-23       1      67 []       6      72 .]       6      72 .] 0.99

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 2.8e-26
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXXXX CS
        SlyX  1 leerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgaseaeeepPPHY 67
                le+rl eLE++lafqe tie+Ln++v++++ +++++++++rl+ e+lk+ ++s+ as+aee+pPPHY
  CTQ30314.1  6 LETRLAELESRLAFQEITIEDLNKTVTAHEIEMAKMREHMRLMIEKLKATQPSHIASQAEETPPPHY 72
                699**************************************************************** PP

>> Sugarporin_N  Maltoporin periplasmic N-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3     4e-06    0.0065      26      40 ..       4      18 ..       1      28 [. 0.89
   2 ?   -2.6   0.0       3.4   5.5e+03      46      50 ..      61      65 ..      52      67 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4e-06
  Sugarporin_N 26 ltiEaRLaaLEkrLq 40
                  +t+E RLa LE+rL+
    CTQ30314.1  4 STLETRLAELESRLA 18
                  8*************8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.4
  Sugarporin_N 46 aqaAe 50
                  a++Ae
    CTQ30314.1 61 ASQAE 65
                  44444 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   1.2   8.3e-06     0.014      72     118 ..       2      48 ..       1      57 [. 0.89

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.3e-06
      DUF641  72 eeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeea 118
                 ++s+le+++ e+ s l+ +eit+++l++ ++a + e+ +++e+++ +
  CTQ30314.1   2 HDSTLETRLAELESRLAFQEITIEDLNKTVTAHEIEMAKMREHMRLM 48 
                 678999************************************99765 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   2.0   1.1e-05     0.018     180     230 ..       5      55 ..       4      58 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-05
  Tropomyosin 180 tLeekLkeaeeRaeeAErsvqkLekevdrledeleaekekykaiseeLdqt 230
                  tLe++L+e e R  + E +++ L+k+v + e e+ + +e+++ + e+L  t
   CTQ30314.1   5 TLETRLAELESRLAFQEITIEDLNKTVTAHEIEMAKMREHMRLMIEKLKAT 55 
                  799**************************************9999999765 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.4   1.8e-05      0.03      47      95 ..       7      55 ..       2      63 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
                .HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHH CS
       DUF16 47 geqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqki 95
                + ++++le     q+  i++l++++ a + e+ k+ e ++l++e L+++
  CTQ30314.1  7 ETRLAELESRLAFQEITIEDLNKTVTAHEIEMAKMREHMRLMIEKLKAT 55
                5666777777777777777777777777777777777777777777654 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.3   4.1e-05     0.067       6      41 ..       4      42 ..       3      57 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.1e-05
  Cep57_CLD_2  6 ktLqnrLdsltrklqvheeelkrLnk...ERdsalrqLg 41
                 +tL++rL  l+++l+ +e+++++Lnk    ++  + + +
   CTQ30314.1  4 STLETRLAELESRLAFQEITIEDLNKtvtAHEIEMAKMR 42
                 69***********************97774554444444 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.1   4.7e-05     0.077      59     103 ..       5      49 ..       2      52 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.7e-05
                  -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT CS
  Prefoldin_2  59 dkeevkeeLeerketlekeiktlekqleklekeleelkeelqkkl 103
                  ++e+ ++eLe r+++ e  i+ l+k  + +e e+++++e+ + ++
   CTQ30314.1   5 TLETRLAELESRLAFQEITIEDLNKTVTAHEIEMAKMREHMRLMI 49 
                  6788889********************************998665 PP

>> QWRF  QWRF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   4.6e-05     0.075     157     202 ..       3      48 ..       2      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.6e-05
        QWRF 157 eaalsaqklaaekkLfnawlriseLresvaekriklqklrqelKLa 202
                 +++l ++ ++ e+ L   + +i +L++ v++  i++ k+r++++L+
  CTQ30314.1   3 DSTLETRLAELESRLAFQEITIEDLNKTVTAHEIEMAKMREHMRLM 48 
                 56777777888999******************************96 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3     6e-05     0.098      79     135 ..       6      62 ..       2      69 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6e-05
       Atg14  79 lrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiak 135
                 l+ rl+el+ +l  +   ie+  k++ ++  +++k+r+ ++++ ++l++ + ++ia+
  CTQ30314.1   6 LETRLAELESRLAFQEITIEDLNKTVTAHEIEMAKMREHMRLMIEKLKATQPSHIAS 62 
                 67899*************************************************987 PP

>> YgbB  YgbB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2     6e-05     0.098      77     129 ..      10      62 ..       3      68 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6e-05
                 HHHHHHHHHHTTEEEEEEEEEEECSSSTCGGGHHHHHHHHHHHHTS-GGGEEE CS
        YgbB  77 Leevlellkekgykivnvdvtiiaekpklapykeamrenlakllgleeeqvsv 129
                 L+e  ++l+ ++++i+ ++ t++a++  +a+++e+mr  ++kl  ++ +++  
  CTQ30314.1  10 LAELESRLAFQEITIEDLNKTVTAHEIEMAKMREHMRLMIEKLKATQPSHIAS 62 
                 667777888899******************************99999888865 PP

>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4    0.0001      0.16     161     209 ..       5      53 ..       2      67 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
        MPS2 161 aLevrveslkdELeakdevlrekeRelleLkkrlseykekYellqrefs 209
                 +Le+r+++l+  L +++ ++++ ++ ++  ++ + +++e   l+ ++ +
  CTQ30314.1   5 TLETRLAELESRLAFQEITIEDLNKTVTAHEIEMAKMREHMRLMIEKLK 53 
                 8**************************************9998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1175  (0.0655363); expected 358.6 (0.02)
Passed bias filter:                      736  (0.0410508); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 549.76
//
Query:       CTQ30315.1  [L=195]
Description: FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-09   38.1   0.0      2e-09   37.6   0.0    1.3  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   1.1e-13     2e-09       7      93 ..       5     136 ..       1     137 [. 0.83

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1.1e-13
                 TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTT................................ CS
      FKBP_C   7 egdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYge................................ 73 
                 ++ +V++ y+ + edg ++d+s   + pl    G g +i G+e+al g +vG+k  + +  + aYg+                                
  CTQ30315.1   5 KDLVVSLAYQVRTEDGVLVDES-PVSAPLDYLHGHGSLISGLENALDGHEVGDKFDVAVGANDAYGQydenlvqrvpkdvfmgvdelqvgmrflaetdq 102
                 55589*****************.8999****************************************88888888888888888888888888888887 PP

                 ................TTBCTTTB.TTSEEEEEEEE CS
      FKBP_C  74 ................kglaggvippnatLvFeveL 93 
                                  + ++  + ++++L F+ve+
  CTQ30315.1 103 gpvpveiteveddhvvVDGNH--MLAGQNLKFNVEV 136
                 777777766655554322223..7777999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1464.02
//
Query:       CTQ30316.1  [L=198]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1708  (0.0952647); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1500.40
//
Query:       CTQ30317.1  [L=66]
Description: hypothetical protein CH1034_350013 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-19   68.1   2.5    6.3e-19   67.9   2.5    1.1  1  DUF2387          Probable metal-binding protein (DUF2387)
    0.00079   19.4   0.5    0.00079   19.4   0.5    1.5  2  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
      0.005   17.2   1.4     0.0063   16.9   1.4    1.1  1  Lar_restr_allev  Restriction alleviation protein Lar
     0.0074   15.7   0.7        1.3    8.5   0.1    2.2  2  zf-ribbon_3      zinc-ribbon domain
     0.0081   15.5   1.0      0.014   14.7   0.9    1.4  1  zf-TFIIB         Transcription factor zinc-finger
  ------ inclusion threshold ------
      0.028   14.4   1.8      0.035   14.2   1.8    1.3  1  Elf1             Transcription elongation factor Elf1 like
      0.029   14.0   0.3      0.044   13.4   0.3    1.3  1  GATA             GATA zinc finger
      0.033   14.1   1.4      0.041   13.8   1.4    1.3  1  OrfB_Zn_ribbon   Putative transposase DNA-binding domain
      0.043   13.8   0.3      0.076   13.0   0.3    1.4  1  PhnA_Zn_Ribbon   PhnA Zinc-Ribbon
      0.043   13.7   0.5      0.059   13.3   0.5    1.2  1  eIF-5_eIF-2B     Domain found in IF2B/IF5
      0.047   13.4   2.7        1.7    8.4   0.1    2.2  2  Rubredoxin_2     Rubredoxin metal binding domain
      0.063   13.2   4.3       0.31   11.0   4.3    2.0  1  zinc_ribbon_4    zinc-ribbon domain
      0.086   12.7   4.4        1.7    8.6   0.6    2.6  3  TFIIS_C          Transcription factor S-II (TFIIS)
      0.096   12.7   2.7       0.31   11.1   2.7    1.8  1  DZR              Double zinc ribbon
        0.1   13.3   0.7        0.1   13.3   0.7    1.8  2  BIR              Inhibitor of Apoptosis domain
       0.12   12.8   3.2        1.5    9.3   0.7    2.2  2  zf-IS66          zinc-finger binding domain of transposase IS
       0.13   12.3   2.1        4.7    7.3   2.1    2.1  1  CpXC             CpXC protein
       0.13   11.9   2.0        0.3   10.8   2.0    1.6  1  Ribosomal_S27e   Ribosomal protein S27
       0.93    9.4   4.4        0.5   10.3   0.3    2.1  2  ADD_ATRX         Cysteine Rich ADD domain
        1.9    8.7   5.8         13    6.0   0.5    2.2  3  Zn-ribbon_8      Zinc ribbon domain


Domain annotation for each model (and alignments):
>> DUF2387  Probable metal-binding protein (DUF2387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   2.5     7e-22   6.3e-19       2      56 ..       4      58 ..       3      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 7e-22
     DUF2387  2 kkrFiAGavCPrCsemDkirmweedeveyrECvsCgftdelsekgqsvakelktr 56
                +krFiAGa CP+C+++D++ mw+e++v+++ECv+Cg+  + ++k+  + +  +++
  CTQ30317.1  4 RKRFIAGAKCPACQAQDSLAMWRENNVDVVECVKCGHQMREADKEAREHVRKEEQ 58
                7************************************999999977776666655 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.5   8.8e-07   0.00079      13      46 .]       5      41 ..       1      41 [. 0.88
   2 ?   -2.8   0.1       7.3   6.6e+03       3      10 ..      46      53 ..      44      55 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 8.8e-07
  Zn_Tnp_IS1595 13 lrWpngfvCPhCgsrkayrikt...rglfqCkeCrkq 46
                    r+ +g  CP+C+ + +  +++     + +C +C++q
     CTQ30317.1  5 KRFIAGAKCPACQAQDSLAMWRennVDVVECVKCGHQ 41
                   6888999********8888888888***********8 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.3
  Zn_Tnp_IS1595  3 EeearalL 10
                   + ear+++
     CTQ30317.1 46 DKEAREHV 53
                   67888876 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.4     7e-06    0.0063       5      49 ..      12      50 ..      10      62 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7e-06
  Lar_restr_allev  5 pCPfCggravlersqrvvaeigqcvyCadCgastpwfkiaedeae 49
                      CP C  ++ l     +  +   +v+C +Cg    ++++a++ea+
       CTQ30317.1 12 KCPACQAQDSLAMWRENNVD---VVECVKCGH---QMREADKEAR 50
                     6**********998888887...*********...4444444433 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0091       8.2       4      11 ..      12      19 ..       9      24 .. 0.68
   2 !    8.5   0.1    0.0015       1.3       3      11 ..      33      41 ..      32      47 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0091
  zf-ribbon_3  4 rCPnCGap 11
                 +CP+C a+
   CTQ30317.1 12 KCPACQAQ 19
                 68887665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0015
  zf-ribbon_3  3 vrCPnCGap 11
                 v+C +CG++
   CTQ30317.1 33 VECVKCGHQ 41
                 79*****96 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.9   1.6e-05     0.014       1      26 [.      12      39 ..      12      39 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-05
    zf-TFIIB  1 kCPkCq.d.eleeserggveidyCpqCr 26
                kCP+Cq + +l + + ++v +  C +C+
  CTQ30317.1 12 KCPACQaQdSLAMWRENNVDVVECVKCG 39
                8****84348999999***********7 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.8   3.9e-05     0.035      23      56 ..      12      43 ..       3      64 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.9e-05
        Elf1 23 dCpfCnheksvevkldkkekiaevsCkvCgesfe 56
                +Cp C++++s++  + +++++ +v+C +Cg +++
  CTQ30317.1 12 KCPACQAQDSLA--MWRENNVDVVECVKCGHQMR 43
                7*******9875..789999**********9765 PP

>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   4.9e-05     0.044       1      31 [.      13      43 ..      13      47 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.9e-05
        GATA  1 CsnCgttkT.plWRrgpdgnksLCnaCGlyyk 31
                C  C++ ++ ++WR++       C  CG  ++
  CTQ30317.1 13 CPACQAQDSlAMWRENNVDVV-ECVKCGHQMR 43
                999*************77777.*****97666 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.4   4.6e-05     0.041      27      62 ..       9      49 ..       1      56 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.6e-05
  OrfB_Zn_ribbon 27 TSktCseCgsknke....alsgrtfkCpnCgfe.adrDvnA 62
                       +C+ C ++++     +++ ++++C +Cg++   +D  A
      CTQ30317.1  9 AGAKCPACQAQDSLamwrENNVDVVECVKCGHQmREADKEA 49
                    6789********99999999************966777665 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   8.4e-05     0.076       4      28 ..      12      41 ..       9      43 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.4e-05
  PhnA_Zn_Ribbon  4 kCplCaSeytY.....edgallvCpeCahE 28
                    kCp C++  ++      + ++  C +C+h+
      CTQ30317.1 12 KCPACQAQDSLamwreNNVDVVECVKCGHQ 41
                    9*************987789999******9 PP

>> eIF-5_eIF-2B  Domain found in IF2B/IF5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   6.6e-05     0.059      89     117 .]      12      41 ..       5      41 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.6e-05
                   STSSSTSTCE.EECCSSSCEEEEESSSTCE CS
  eIF-5_eIF-2B  89 lCkeCkspet.elekeerllvlkCkaCgak 117
                    C+ C+ ++   + +e+++ v++C +Cg++
    CTQ30317.1  12 KCPACQAQDSlAMWRENNVDVVECVKCGHQ 41 
                   6*****988625666*************85 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0019       1.7      16      26 ..      12      22 ..      12      23 .. 0.87
   2 ?    5.3   0.3     0.019        17       2       9 ..      34      41 ..      34      44 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0019
  Rubredoxin_2 16 rCpsCgsWntl 26
                  +Cp+C++ ++l
    CTQ30317.1 12 KCPACQAQDSL 22
                  7*****98887 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.019
  Rubredoxin_2  2 vCsqCGfe 9 
                  +C +CG++
    CTQ30317.1 34 ECVKCGHQ 41
                  5*****98 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.3   0.00034      0.31       4      35 ..      12      42 ..      10      43 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00034
  zinc_ribbon_4  4 tCpsCkakyeiddeklpakgv.kvrCskCghvF 35
                    Cp+C+a+ +++ +  +++ v  v C kCgh  
     CTQ30317.1 12 KCPACQAQDSLAMW--RENNVdVVECVKCGHQM 42
                   6***********98..7777769********86 PP

>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.021        19       1      10 [.      11      20 ..      11      26 .. 0.79
   2 ?    8.6   0.6    0.0019       1.7      28      38 ..      32      42 ..      27      43 .. 0.81
   3 ?    1.5   0.0      0.31   2.8e+02      17      23 ..      41      47 ..      40      50 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.021
     TFIIS_C  1 akCpkCgsre 10
                akCp C+ ++
  CTQ30317.1 11 AKCPACQAQD 20
                5899999765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0019
     TFIIS_C 28 fykCtkCghrW 38
                 ++C+kCgh+ 
  CTQ30317.1 32 VVECVKCGHQM 42
                579******86 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.31
     TFIIS_C 17 QtRsaDE 23
                Q+R aD 
  CTQ30317.1 41 QMREADK 47
                9*****5 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.7   0.00034      0.31      15      41 ..      13      45 ..       4      51 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
         DZR 15 CseCgtk..lkavaa.......edrCpsCgekvdpe 41
                C++C+++  l               C++Cg+++ + 
  CTQ30317.1 13 CPACQAQdsLA---MwrennvdVVECVKCGHQMREA 45
                88888885522...1234667788888888887654 PP

>> BIR  Inhibitor of Apoptosis domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.2      0.61   5.5e+02      40      55 ..      11      28 ..       9      30 .. 0.69
   2 ?   13.3   0.7   0.00011       0.1      35      65 ..      28      55 ..      18      58 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.61
         BIR 40 vqCfyCkl..aldgweed 55
                ++C +C+   +l  w+e+
  CTQ30317.1 11 AKCPACQAqdSLAMWREN 28
                689999862257777766 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00011
         BIR 35 eskdnvqCfyCklaldgweedDdpleeHkkh 65
                ++ d v+C+ C++++   +e D+ ++eH + 
  CTQ30317.1 28 NNVDVVECVKCGHQM---READKEAREHVRK 55
                5789**********9...999999****986 PP

>> zf-IS66  zinc-finger binding domain of transposase IS66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.073        65       3      10 ..      12      19 ..      11      27 .. 0.78
   2 ?    9.3   0.7    0.0017       1.5       4      23 ..      35      53 ..      34      60 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.073
     zf-IS66  3 tCpcCGgl 10
                +Cp C+++
  CTQ30317.1 12 KCPACQAQ 19
                69999985 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0017
     zf-IS66  4 CpcCGgllkpigedrvreel 23
                C +CG++++++ ++  re++
  CTQ30317.1 35 CVKCGHQMREADKE-AREHV 53
                99*****9999999.89887 PP

>> CpXC  CpXC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.1    0.0052       4.7       2      21 ..      12      31 ..      11      65 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0052
        CpXC  2 tCpaCgkefeaeiwtsidad 21
                +CpaC+++ +  +w+  ++d
  CTQ30317.1 12 KCPACQAQDSLAMWRENNVD 31
                68888888888888765554 PP

>> Ribosomal_S27e  Ribosomal protein S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.0   0.00033       0.3       8      36 ..      11      42 ..       3      45 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00033
                    EE-TTTS-EEEEE...SS-SS-EEESSSTCEE CS
  Ribosomal_S27e  8 vkCpdCenetvvF...shaatvvkCisCgkvL 36
                     kCp C+++       +    vv+C++Cg+ +
      CTQ30317.1 11 AKCPACQAQDSLAmwrENNVDVVECVKCGHQM 42
                    69****9997543122566789*******876 PP

>> ADD_ATRX  Cysteine Rich ADD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.3      0.38   3.4e+02      12      20 ..      11      19 ..       3      27 .. 0.80
   2 ?   10.3   0.3   0.00056       0.5       7      27 ..      28      48 ..      23      56 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.38
    ADD_ATRX 12 vsCtaCgqq 20
                 +C aC  q
  CTQ30317.1 11 AKCPACQAQ 19
                58****887 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00056
    ADD_ATRX  7 eleeivsCtaCgqqvnhfqkd 27
                +  + v+C  Cg+q+    k+
  CTQ30317.1 28 NNVDVVECVKCGHQMREADKE 48
                55678**********998886 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.6     0.019        17      27      34 ..      11      18 ..       3      25 .. 0.78
   2 ?    4.9   5.6     0.032        29       7      37 ..      12      43 ..      11      45 .. 0.74
   3 ?    6.0   0.5     0.014        13       7      16 ..      34      43 ..      26      55 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.019
  Zn-ribbon_8 27 taCPeCgs 34
                  +CP+C++
   CTQ30317.1 11 AKCPACQA 18
                 46****98 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.032
  Zn-ribbon_8  7 rCeeCghefevlqsis.daplta.CPeCgsevr 37
                 +C +C+   + l+     + +++ C +Cg+++r
   CTQ30317.1 12 KCPACQ-AQDSLAMWReNNVDVVeCVKCGHQMR 43
                 699999.66777766645557778999999876 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.014
  Zn-ribbon_8  7 rCeeCghefe 16
                 +C +Cgh+  
   CTQ30317.1 34 ECVKCGHQMR 43
                 5777777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 512.82
//
Query:       CTQ30318.1  [L=601]
Description: potassium:proton antiporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-66  222.3  49.0    1.2e-65  221.8  49.0    1.1  1  Na_H_Exchanger   Sodium/hydrogen exchanger family
    6.6e-25   87.6   0.0    1.2e-24   86.8   0.0    1.4  1  TrkA_N           TrkA-N domain
  ------ inclusion threshold ------
      0.032   13.6   0.1      0.085   12.2   0.1    1.7  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.034   14.4   0.0      0.064   13.5   0.0    1.5  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.078   13.0   0.0       0.18   11.9   0.0    1.6  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
        0.1   11.8   0.1       0.14   11.4   0.1    1.3  1  FAD_binding_3    FAD binding domain
        3.1    6.5   6.0       0.37    9.6   0.1    2.1  2  DUF4781          Domain of unknown function (DUF4781)


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.8  49.0   4.6e-69   1.2e-65       4     380 ..      12     373 ..       9     374 .. 0.96

  Alignments for each domain:
  == domain 1  score: 221.8 bits;  conditional E-value: 4.6e-69
                     HHHHHHHHHH.HHHHTTSXHHHHHHHHHHHHTTTTTS.....HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   4 lillallvgl.larrlklpeivgliiaGlllGpsglgliepseedlevlselglilllFlaGleldlrelrknlksilllallgvlitvvliGll 97 
                     l+l a+++ + la rl+++ ++g+++aG+ +Gp+glg+i++  + + ++selg+++l+F +Glel++++l++ + si+ ++ ++v ++++++G l
      CTQ30318.1  12 LFLFAAVIAVpLAARLGIGAVLGYLLAGIAIGPWGLGFISDV-DEILHFSELGVVFLMFIIGLELNPAKLWRLRSSIFGVGAAQVMLSAAILGGL 105
                     445555555559******************************.************************************************9999 PP

                     HH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXHHHHHHHHHHHHHH CS
  Na_H_Exchanger  98 lylllilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetslllllliflvvavggll 192
                     l      g+++ +a++ g+ l++++++++l++++e+g  +++ g+l +++++++D++++++la+++ la ++a +++ +l++++ +l +a++++ 
      CTQ30318.1 106 LMT---TGFSWQAAVVGGIGLAMSSTAMALQLMREKGMSRSEAGQLGFSVLLFQDLAVIPALALVPLLA-GSADEHVNWLTVGMKVLAFAGMLIG 196
                     995...578***********************************************************9.89*********************** PP

                     HHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHSXHHHHH CS
  Na_H_Exchanger 193 lglvigwllrlitrftdddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnklseklesfreglfnplfFvlvGlsldlkvln 287
                     ++ ++  ++r+i  +  + re++++++lll+l++al++e+lg+s++lg f+aG++l+e+e++++l+  +++f  gl+++lfF++vG+ l+l vl 
      CTQ30318.1 197 GRYLLRPVFRFIASS--GVREVFTAATLLLVLGSALFMEALGLSMALGTFIAGVLLAESEYRHELEIAIDPFK-GLLLGLFFISVGMALNLGVL- 287
                     **************9..********************************************************.********************. PP

                     XXHHHHHHHHHHHHHHHTHHHHHHHHHTTTXSSXHHHHHHCCCCSS.BHHHHHHHHHHHHHHXHHHHTTSSTTTCSTSXHHHHHHHHHHHHHH CS
  Na_H_Exchanger 288 nhlsvlilvllilvaillgrilavflllrllglslrealiigfgglqrgavalalaalgpalgllarelyallivvvlftvlvqGlslkpllk 380
                         +l+ v+++++++++++ l+ +ll+rl+gl ++e++ ++  ++q g++a++l++l  ++ l +++  all+v+v +++      ++pll+
      CTQ30318.1 288 --YTHLLWVAVSVAVLVAVKMLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSLPASQRLFQHDQMALLLVAVTLSMM-----TTPLLM 373
                     ..78888888888888899***********************99999***********************************.....999986 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   4.6e-28   1.2e-24       1     112 [.     403     514 ..     403     517 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 4.6e-28
                 EEEES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEESSG CS
      TrkA_N   1 iiiiGlGrvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraqdp 99 
                 +ii+G+Gr+G+ + + L++++++++v ++d ++v+ +r+ g++v+ gdat+ e+L++ag+e+a+++++++++ e+++ +v+++++++p+++i ara+ +
  CTQ30318.1 403 VIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRNYGYKVYFGDATQLELLRSAGAEEAQSIVITCNEPEDTMRLVEMCQQHFPHLHILARARGR 501
                 79*****************9989**************************************************************************** PP

                 GGHHHHHHHTTSE CS
      TrkA_N 100 ehaellkklgadv 112
                  +a+ l ++g+++
  CTQ30318.1 502 VEAHELLQAGVTQ 514
                 **********976 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.3e-05     0.085      38     109 ..     402     482 ..     387     514 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.3e-05
                   EEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEEC....SHHHH.....HHH-SEEEE-S--STTTTTSB CS
  2-Hacid_dh_C  38 tvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelv....sleel.....laesDivslhlpltpetrhli 109
                   +v i+G+Gr Gq + ++l a +m++++ +r  ++ + ++++g+++     +  el      +e++ ++++++  ++t  l+
    CTQ30318.1 402 QVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRNYGYKVYfgdaTQLELlrsagAEEAQSIVITCNEPEDTMRLV 482
                   789*************************99998877555555533212112223312222345667777777777777666 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.5e-05     0.064       1      92 [.     403     488 ..     403     493 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-05
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS.SEEEE-SSGGGHHHHHHHHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg.dlvvnlsppissldvlkaCiet 92 
                      v+i+G+G+ Gq++ +ll +++ +  +itv +r+ + ++ +    ++   + +  da + e + +a  +e+  +v+ +  p  ++ ++++C ++
       CTQ30318.1 403 VIIVGFGRFGQVIGRLLMANK-M--RITVLERDISAVNLM----RNYGYKVYFGDATQLELLRSAGAEEAqSIVITCNEPEDTMRLVEMCQQH 488
                      79**************99986.5..9*******9995544....5555666666666666633444566679999999999999999999876 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     7e-05      0.18      13      56 ..     401     442 ..     396     496 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7e-05
                   -EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH CS
  Shikimate_DH  13 kkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeel 56 
                    +v+++G G+ ++ + + L+a++++ ++v+ R+++ ++ + +++
    CTQ30318.1 401 PQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDISAVNLM-RNY 442
                   589******************9999.*******9876654.444 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   5.3e-05      0.14       3      80 ..     402     492 ..     400     596 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.3e-05
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EE.....EHHHHHHHHHTT-HHH...HHHHSEECCCCEEEEEEE.....C CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradgl.....nqrtmellrqlGledr...ilaegapnelmgealyne.....l 80 
                    +V+IVG G  G + ++lL     r +++e+  ++v+l r  g      + + +ellr++G e+    ++    p+++m+ + +++     l
     CTQ30318.1 402 QVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRNYGYkvyfgDATQLELLRSAGAEEAqsiVITCNEPEDTMRLVEMCQqhfphL 492
                    8********************9****************88776222225689********9876333455666777777777777444441 PP

>> DUF4781  Domain of unknown function (DUF4781)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.8      0.52   1.3e+03     100     133 ..       9      46 ..       5      48 .. 0.63
   2 ?    9.6   0.1   0.00014      0.37     198     252 ..     107     161 ..      93     167 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.52
     DUF4781 100 vaavpvgaaalatPvaapvllaa....lvvgvgsavYs 133
                 ++++ ++aa +a+P+aa + ++a    l++g++ + ++
  CTQ30318.1   9 AGVLFLFAAVIAVPLAARLGIGAvlgyLLAGIAIGPWG 46 
                 3477899999****999865553111155666666665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00014
     DUF4781 198 avnginvssivisgtgvansvydlvlkvaddeqlsaldvlqlsasllffthsvvn 252
                 + +g+ ++  v++g+g+a+s++ + l+ ++++ +s  ++ ql  s+l+f   +v 
  CTQ30318.1 107 MTTGFSWQAAVVGGIGLAMSSTAMALQLMREKGMSRSEAGQLGFSVLLFQDLAVI 161
                 56789999*******************9999******************876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4188.71
//
Query:       CTQ30319.1  [L=186]
Description: component of potassium effux complex with KefB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-37  128.9   0.0    2.3e-37  128.7   0.0    1.0  1  Flavodoxin_2  Flavodoxin-like fold
     0.0014   18.4   0.0     0.0024   17.6   0.0    1.6  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.7   0.0   2.5e-41   2.3e-37       2     192 ..       6     167 ..       5     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: 128.7 bits;  conditional E-value: 2.5e-41
                   EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCCT-----CCCCHCCHHHHTTCHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHHHH CS
  Flavodoxin_2   2 kiLiinahprpeksfssalaqafvealekagphevtvrdLyadflpvlttrdlaaklayeekpadveseqiekllaadaivlqfPlwwfgvPailKg 98 
                   k+L+++ahp+    + s +++ ++e + +    +vtv+dLya               +y+++ +d++ eq + l+++++iv+q+Pl+ +++Pa+lK+
    CTQ30319.1   6 KVLLLYAHPES---QDSVANRVLLEPALQLP--NVTVHDLYA---------------HYPDFFIDIAYEQ-DLLRQHEVIVFQHPLYTWSCPALLKE 81 
                   9********86...55669999999999998..4********...............9***66*******.************************** PP

                   HHHHHS-TTTSCEETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHHHHHHHHHTT-EEEEEEEEESCTCCCHHHHHHHHHH CS
  Flavodoxin_2  99 wiDrvltagfafyteeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpplrgilgfiGikdvepvlvegvagaedeealaeale 192
                   w+Drvl++gfa     g   +g+ L+gk ++ ++ttG pe++y++++ ++++m+++l+p++ ++g++ +++  p++v+ ++ ++ ee l   + 
    CTQ30319.1  82 WLDRVLSRGFAS----G--AGGNELAGKYWRSVITTGEPESAYRRDA-NRYPMNDILRPFELTAGMCRMHWMSPIIVYWARRQQPEE-LRSRAL 167
                   **********99....4..34699*******************9665.567***************************975433344.333333 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.7e-07    0.0024      68     119 ..      56     112 ..       6     130 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.7e-07
                 HHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-......SSCHCCTT-EEEEEEE-S CS
     FMN_red  68 ekiaaadaliivtPeYngsysgllKnalDrlsr.....trgkkelrgKpvalvavgg 119
                 + +++++++++  P Y +s ++llK  lDr+        +g++el+gK+   v + g
  CTQ30319.1  56 DLLRQHEVIVFQHPLYTWSCPALLKEWLDRVLSrgfasGAGGNELAGKYWRSVITTG 112
                 5678999***********************855799998999999999876665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1478.36
//
Query:       CTQ30320.1  [L=634]
Description: fused putative transporter subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-51  173.6   3.7    1.8e-25   90.0   0.0    3.7  3  ABC_tran         ABC transporter
    4.9e-29  100.2   4.1    4.9e-29  100.2   4.1    3.2  2  ABC_tran_Xtn     ABC transporter
    4.8e-15   56.2  12.5     0.0027   17.6   0.4    4.3  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    4.5e-08   32.8   0.8      0.091   12.2   0.0    4.2  4  SMC_N            RecF/RecN/SMC N terminal domain
      1e-07   32.0   0.2     0.0024   18.0   0.0    2.9  2  MMR_HSR1         50S ribosome-binding GTPase
    7.1e-07   29.4  10.1    7.1e-07   29.4  10.1    2.6  1  ABC_tran_CTD     ABC transporter C-terminal domain
    5.2e-06   26.1   1.7      0.054   13.3   0.1    2.7  2  AAA_29           P-loop containing region of AAA domain
    7.6e-06   25.9   1.7      0.037   13.9   0.1    2.6  2  RsgA_GTPase      RsgA GTPase
    8.7e-06   26.3   0.1       0.18   12.4   0.0    3.4  2  AAA_18           AAA domain
    1.9e-05   25.1   6.1     0.0024   18.2   0.0    3.2  2  AAA_16           AAA ATPase domain
    0.00018   20.8   1.9       0.07   12.4   0.1    2.8  2  KAP_NTPase       KAP family P-loop domain
    0.00046   20.5   0.4       0.93    9.9   0.0    2.8  2  RNA_helicase     RNA helicase
    0.00055   19.2   0.9        1.3    8.1   0.1    3.4  3  DUF815           Protein of unknown function (DUF815)
    0.00063   18.8   7.1      0.068   12.1   0.2    2.9  3  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
    0.00098   19.4   0.7    0.00098   19.4   0.7    2.7  1  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
     0.0011   18.2   1.3       0.56    9.5   0.1    2.6  2  Zeta_toxin       Zeta toxin
     0.0019   18.6   0.1        3.5    8.1   0.0    2.9  2  AAA              ATPase family associated with various cellul
     0.0026   17.0   0.0       0.43    9.7   0.0    2.5  2  NB-ARC           NB-ARC domain
     0.0033   17.7   0.0        4.9    7.4   0.0    3.0  2  AAA_28           AAA domain
     0.0042   17.3   2.3        1.7    8.9   0.0    3.1  2  AAA_22           AAA domain
     0.0046   16.6   1.0       0.16   11.6   0.0    2.6  2  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
     0.0092   15.6   0.1        1.2    8.7   0.0    2.9  2  AAA_25           AAA domain
     0.0094   16.0   9.6        0.2   11.7   3.8    2.8  2  DUF1192          Protein of unknown function (DUF1192)
  ------ inclusion threshold ------
       0.01   15.9   5.5        0.2   11.7   0.0    3.8  4  Dynamin_N        Dynamin family
      0.018   14.8   1.6        2.7    7.7   0.1    2.5  2  AAA_24           AAA domain
      0.029   14.5   1.5        9.1    6.4   0.0    3.3  3  AAA_33           AAA domain
       0.03   14.2   5.6          1    9.2   0.1    3.2  3  NACHT            NACHT domain
      0.031   14.2   1.0        7.1    6.5   0.0    2.6  2  NTPase_1         NTPase
      0.033   13.7   0.1        8.9    5.8   0.0    2.5  2  FeoB_N           Ferrous iron transport protein B
      0.042   13.6   1.6        4.3    7.1   0.2    2.5  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.045   13.7   1.0        7.4    6.5   0.1    2.5  2  MobB             Molybdopterin guanine dinucleotide synthesis
       0.06   13.0   0.3       0.06   13.0   0.3    3.9  4  AAA_15           AAA ATPase domain
      0.061   13.5   3.5       0.12   12.6   3.5    1.4  1  DUF1283          Protein of unknown function (DUF1283)
      0.073   13.3   2.9       0.73   10.1   0.1    3.7  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
       0.08   13.2   0.9        9.9    6.4   0.1    2.6  2  Roc              Ras of Complex, Roc, domain of DAPkinase
        0.1   12.9   0.3        0.1   12.9   0.3    3.7  2  Lzipper-MIP1     Leucine-zipper of ternary complex factor MIP
       0.11   12.2   4.9        5.6    6.6   0.1    3.3  2  AAA_30           AAA domain
       0.15   12.0   2.0        6.8    6.7   0.1    2.7  2  AAA_5            AAA domain (dynein-related subfamily)
       0.18   11.8   0.4        8.6    6.4   0.0    2.7  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.24   11.9   0.1       0.24   11.9   0.1    4.1  3  AAA_23           AAA domain
       0.28   11.8  11.3       0.98   10.1   0.9    3.4  2  SlyX             SlyX
       0.37   10.8  10.9        1.2    9.2   0.1    3.4  4  DUF87            Helicase HerA, central domain
       0.62   10.5   2.6        1.9    8.9   2.6    1.9  1  DUF4094          Domain of unknown function (DUF4094)
        0.9   10.3   7.6      0.077   13.7   0.8    2.4  2  FliD_N           Flagellar hook-associated protein 2 N-termin
       0.95    9.3   5.9         13    5.6   0.0    3.2  3  dNK              Deoxynucleoside kinase
          1    9.0   6.2       0.37   10.4   1.9    2.6  2  Trimer_CC        Trimerisation motif
        1.3    8.8   3.8       0.49   10.1   0.5    1.9  2  DUF3287          Protein of unknown function (DUF3287)
        1.5    7.4  13.3        5.3    5.6   0.1    3.7  4  AAA_13           AAA domain
        4.6    7.9   9.7         11    6.7   1.9    2.7  2  Cytochrom_B562   Cytochrome b562
        4.9    7.0  17.7        1.1    9.1   1.5    2.8  2  DivIC            Septum formation initiator
        5.5    6.6  16.2        7.4    6.1   4.0    2.3  2  Snf7             Snf7
        6.7    6.0  15.7          4    6.7   8.2    2.3  2  DUF4407          Domain of unknown function (DUF4407)
        9.6    6.0   9.8        1.3    8.8   3.6    2.3  2  SKA1             Spindle and kinetochore-associated protein 1


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.0   4.1e-25   1.4e-22       1     137 []      17     178 ..      17     178 .. 0.74
   2 !   90.0   0.0   5.4e-28   1.8e-25       1     137 []     328     459 ..     328     459 .. 0.86
   3 ?    1.3   0.7       1.3   4.4e+02      51     102 ..     548     607 ..     514     624 .. 0.65

  Alignments for each domain:
  == domain 1  score: 80.7 bits;  conditional E-value: 4.1e-25
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren................ 79 
                 l+n + ++++g+kv++vG+nG+GKStLl+ll ++ + + G++++ g+        ++    +  i ++   ++  ++l+++ +                
  CTQ30320.1  17 LDNATATINPGQKVGLVGKNGCGKSTLLSLLKNEISADGGSMTFPGNWQLAwvnqETPALPQPAIDYVIDGDREYRQLEAALQlanerndghaiatfhg 115
                 7999**************************************887554333355344555566677766664444444322225555667777777777 PP

                 ........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                         + +++++ +l+ lg   + ++ +++  s +SgG++ r+ la+al+++++llllDEpt+
  CTQ30320.1 116 kldaidawTIRSRAASLLHGLG---FSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTN 178
                 7776655555555666666666...5557776667******************************8 PP

  == domain 2  score: 90.0 bits;  conditional E-value: 5.4e-28
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGGB-HHHCCHCEEEE-SS--S-TTSB.HHHHHHHTCHHHHHHHSTTGGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlkeqeleslrkeigvlpqepqlfpelt.vrenesdeeiekalsklglkel 97 
                 l+ ++l+l +g++++++G+nGaGKStL+kllag+l+p +Gei l  g +l +    ++++++++l  +++  ++l  ++ +e ++++ ++l  +g ++ 
  CTQ30320.1 328 LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELQPVSGEIGLAkGIKLGY----FAQHQLEFLRADESPLQHLArLAPQELEQKLRDYLGGFGFQG- 421
                 6899**************************************8876777777....888888888888655555532555578888888888888665. PP

                 TCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  98 kdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                   ++v+++++ +SgG+k r++la +++++p+llllDEpt+
  CTQ30320.1 422 --DKVSEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTN 459
                 ..889999*******************************8 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 1.3
                 G......B-HHHCCHCEEEE-SS.--S-TTSB.HHHHHHHTCHHHHHHHSTTGGTTCBGE CS
                 x......xxxxxxxxxxxxxxxx.xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  51 e......qeleslrkeigvlpqe.pqlfpelt.vrenesdeeiekalsklglkelkdtvv 102
                 +       +++ lrkei+ l++e ++l+ +l  ++e+  d+e+++a +k +l+e+ ++ +
  CTQ30320.1 548 RreaelrSQTQPLRKEIARLEKEmDKLNAQLAsAEEKLGDSELYDASRKAELTECLQQQA 607
                 223333446667777777777777777777764444455666666666666666555554 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   4.1   1.4e-31   4.9e-29       1      81 [.     217     297 ..     217     302 .. 0.93
   2 ?    1.2   4.5       1.2   3.9e+02       4      72 ..     501     569 ..     498     579 .. 0.74

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 1.4e-31
  ABC_tran_Xtn   1 velengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklekiekpeekkp 81 
                   +++e++++ eY+GnYs++  +++ rl+qqq+ ye qq+++++l+++I+rfraka+kakqaqsr+k+Le++e i++ + ++p
    CTQ30320.1 217 IHIEQQTMFEYTGNYSSFEVQRATRLAQQQAMYESQQQRVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNP 297
                   69***********************************************************************88865543 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 1.2
  ABC_tran_Xtn   4 engklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklek 72 
                   ++gk++ ++G+ ++y +     ++q+ ++ e  ++  +  ++  ++ r +a   +q q  +k + +lek
    CTQ30320.1 501 HDGKVEPFDGDLEDYQQWLSDSQKQESQSGEPPKESGNSAQARKDQKRREAELRSQTQPLRKEIARLEK 569
                   678888888888888888888888888888888888888888888888888888888888888888865 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   5.3e-05     0.018       3      19 ..      31      47 ..      30      71 .. 0.84
   2 !   15.5   0.1   3.4e-05     0.011     230     301 ..     143     208 ..     116     210 .. 0.84
   3 !   14.5   0.5   6.8e-05     0.023       3      21 ..     342     360 ..     341     410 .. 0.68
   4 !   17.6   0.4   7.9e-06    0.0027     235     302 ..     429     490 ..     372     491 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.3e-05
      AAA_21  3 vliGpNgsGKSnLLdal 19
                +l+G+Ng+GKS+LL +l
  CTQ30320.1 31 GLVGKNGCGKSTLLSLL 47
                69************999 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 3.4e-05
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpll 301
                  e+p++++S G +  l l+ al+ +    +lll+DEp n+L+  ++  l ++lk  +     +il +H+  +
  CTQ30320.1 143 LERPVSDFSGGWRMRLNLAQALICRS---DLLLLDEPTNHLDLDAVIWLEKWLKGYTG---TLILISHDRDF 208
                 57788888888776679999999888...9*************999999999976666...99999998555 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 6.8e-05
      AAA_21   3 vliGpNgsGKSnLLdaldl 21 
                 +l G+Ng+GKS+L+++l +
  CTQ30320.1 342 GLLGRNGAGKSTLIKLLAG 360
                 699**************43 PP

  == domain 4  score: 17.6 bits;  conditional E-value: 7.9e-06
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                 r +S G k  l l++++++++    lll+DEp n+L+  +   l e l + +     +++++H+ +l+
  CTQ30320.1 429 RRFSGGEKARLVLALIVWQRP---NLLLLDEPTNHLDLDMRQALTEALIDFEG---ALVVVSHDRHLI 490
                 445888888777777777777...89**********************88877...8*******9987 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0057       1.9      27      41 ..      30      44 ..      10      53 .. 0.78
   2 ?    3.5   0.0      0.12        42     147     213 ..     156     221 ..     129     226 .. 0.87
   3 ?    4.3   0.1     0.068        23      28      42 ..     342     356 ..     327     363 .. 0.85
   4 !   12.2   0.0   0.00027     0.091     136     208 ..     430     497 ..     375     505 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0057
                EEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxx RF
       SMC_N 27 taivGpNGSGKsnll 41
                  +vG+NG+GKs ll
  CTQ30320.1 30 VGLVGKNGCGKSTLL 44
                469*********987 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.12
                 HHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-.SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
       SMC_N 147 laLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka.dklvgvtk 213
                 + L +A   + ++ l llDe   +LD   v  + + lk  +    +i is+++++l    dk++ + +
  CTQ30320.1 156 MRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKGYT--GTLILISHDRDFLDPIvDKIIHIEQ 221
                 5566777777788899**********************999..889*******999877688888776 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.068
                 EEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlld 42 
                  ++G+NG+GKs l+ 
  CTQ30320.1 342 GLLGRNGAGKSTLIK 356
                 579********9985 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 0.00027
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-.SCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka.dkl 208
                  +SgGek+ + laL+      ++  l llDe   +LD   ++++ e l   +    ++v+s+++++++   d l
  CTQ30320.1 430 RFSGGEKARLVLALI----VWQRPNLLLLDEPTNHLDLDMRQALTEALIDFE--GALVVVSHDRHLIRSTtDDL 497
                 58*****97777777....6788889********************999887..77899999988887654555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.2   0.00093      0.31       1      22 [.      29      50 ..      29      61 .. 0.86
   2 !   18.0   0.0     7e-06    0.0024       1      45 [.     340     384 ..     340     524 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00093
                EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltge 22
                +v++vG+   GKStL++ l +e
  CTQ30320.1 29 KVGLVGKNGCGKSTLLSLLKNE 50
                699**************99887 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 7e-06
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg 45 
                 +++++Gr  +GKStLi+ l ge   vs + g  + i+ g ++ ++
  CTQ30320.1 340 RIGLLGRNGAGKSTLIKLLAGELQPVSGEIGLAKGIKLGYFAQHQ 384
                 699*******************99999999999999988887332 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4  10.1   2.1e-09   7.1e-07       6      66 ..     560     622 ..     555     625 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2.1e-09
  ABC_tran_CTD   6 eqreleeleaeIeaLEeeiaeleaeladpelysdp..eklaelsaeleeleaeLeelyerWee 66 
                    ++e+++le+e+++L +++a+ e++l d ely  +  ++l+e  ++++ +++ Lee ++ W+e
    CTQ30320.1 560 LRKEIARLEKEMDKLNAQLASAEEKLGDSELYDASrkAELTECLQQQASAKSGLEECEMAWLE 622
                   589*****************************5554699***********************9 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   0.00016     0.054      13      39 ..      18      44 ..      15      48 .. 0.87
   2 !   11.3   0.2   0.00063      0.21      26      39 ..     342     355 ..     327     361 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00016
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                d+ t++i++ + + l+G++G GKSTll
  CTQ30320.1 18 DNATATINPGQKVGLVGKNGCGKSTLL 44
                66788899888999************8 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00063
      AAA_29  26 lltGpsGsGKSTll 39 
                  l G++G+GKSTl+
  CTQ30320.1 342 GLLGRNGAGKSTLI 355
                 589**********8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.2    0.0012      0.41     100     124 ..      28      52 ..       8      59 .. 0.83
   2 !   13.9   0.1   0.00011     0.037     100     130 ..     339     369 ..     306     376 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0012
                  SEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpele 124
                  + + lvG+ G GKStL+  l++e +
   CTQ30320.1  28 QKVGLVGKNGCGKSTLLSLLKNEIS 52 
                  66779**************998865 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 0.00011
                  SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgev 130
                  + + l+G  G+GKStLi+ l++el+   ge+
   CTQ30320.1 339 SRIGLLGRNGAGKSTLIKLLAGELQPVSGEI 369
                  66779*****************988766666 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00053      0.18       1      69 [.      30      93 ..      30     126 .. 0.78
   2 !    9.9   0.0     0.003         1       1      43 [.     341     381 ..     341     416 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00053
      AAA_18  1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldaleenss 69
                ++l G+ G+GK+tl   L+++   +   +++ + +++ l + ++   e+  l ++  d+++d+ +e ++
  CTQ30320.1 30 VGLVGKNGCGKSTLLSLLKNEI--SADGGSMTFPGNWQLAWVNQ---ETPALPQPAIDYVIDGDREYRQ 93
                6899**************9987..99999999999999999998...8888888888887776666554 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.003
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdp 43 
                 I+l G  G+GK+tl k L+ +l    +++++   +g+ l++++
  CTQ30320.1 341 IGLLGRNGAGKSTLIKLLAGEL--QPVSGEIGLAKGIKLGYFA 381
                 8999**************9887..4444444444444444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   7.2e-06    0.0024      18      99 ..      23     108 ..       9     175 .. 0.69
   2 !    8.7   0.1     0.006         2      29     107 ..     343     457 ..     334     506 .. 0.51

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 7.2e-06
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellralekdg.giflrgkcdql..esaipy..sa.laqalareellrqlldeaesaeleawre 99 
                 +++ g+   v l+G  G+GKs+l+  l++++++dg   ++ g+++     +++p   ++ +  +++ ++ +rql+++++ a+ + + +
  CTQ30320.1  23 TINPGQ--KVGLVGKNGCGKSTLLSLLKNEISADGgSMTFPGNWQLAwvNQETPAlpQPaIDYVIDGDREYRQLEAALQLANERNDGH 108
                 455554..47799*********************846669999998877444444454435555666666666666644444444444 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.006
      AAA_16  29 lsGesGvGKsslvrellralekd..........g.giflrgkcdql.esaipysalaqalareellrqlldeaesaeleawrekleeala......... 106
                 l G  G GKs+l++ l+ +l+            + g+f++ + + l   + p+++la+++   + l+q l++     l+ +  + +++ +         
  CTQ30320.1 343 LLGRNGAGKSTLIKLLAGELQPVsgeiglakgiKlGYFAQHQLEFLrADESPLQHLARLA-P-QELEQKLRD----YLGGFGFQGDKVSEetrrfsgge 435
                 8899************98887766656666655334444444433322335555555555.3.233333333....22222222222222222333333 PP

      AAA_16 107 .....................a 107
                                      +
  CTQ30320.1 436 karlvlalivwqrpnlllldeP 457
                 3334444444444444433333 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00021      0.07      17      47 ..      24      54 ..      14     276 .. 0.82
   2 !    6.8   0.1    0.0099       3.4      17      45 ..     335     363 ..     327     373 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00021
  KAP_NTPase 17 latpivvgLygkWGsGKssllnkledelkef 47
                  ++  vgL gk G+GKs+ll +l++e++  
  CTQ30320.1 24 INPGQKVGLVGKNGCGKSTLLSLLKNEISAD 54
                467888*********************9877 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0099
  KAP_NTPase  17 latpivvgLygkWGsGKssllnkledelk 45 
                 l +++ +gL g  G+GKs+l+++l  el+
  CTQ30320.1 335 LVPGSRIGLLGRNGAGKSTLIKLLAGELQ 363
                 5678899*****************98875 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0027      0.93       3      24 ..      32      53 ..      30      73 .. 0.81
   2 ?    7.7   0.1     0.013       4.5       3      23 ..     343     363 ..     341     381 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0027
  RNA_helicase  3 lyGpsgeGKStlakeLakallk 24
                  l+G++g+GKStl   L ++++ 
    CTQ30320.1 32 LVGKNGCGKSTLLSLLKNEISA 53
                  78*************9999984 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.013
  RNA_helicase   3 lyGpsgeGKStlakeLakall 23 
                   l G++g GKStl+k La +l+
    CTQ30320.1 343 LLGRNGAGKSTLIKLLAGELQ 363
                   78**************99887 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1     0.004       1.3      51      80 ..      25      54 ..       8      66 .. 0.84
   2 ?    6.7   0.2     0.011       3.6      54      78 ..     339     363 ..     332     390 .. 0.87
   3 ?   -0.0   0.0       1.2     4e+02      28      57 ..     412     441 ..     381     444 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.004
      DUF815 51 lpannvLLwGarGtGKSslvkallneyaee 80
                +p ++v L+G+ G+GKS+l+  l ne++++
  CTQ30320.1 25 NPGQKVGLVGKNGCGKSTLLSLLKNEISAD 54
                6788999*************9999998876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.011
      DUF815  54 nnvLLwGarGtGKSslvkallneya 78 
                 + + L G  G+GKS+l+k l  e++
  CTQ30320.1 339 SRIGLLGRNGAGKSTLIKLLAGELQ 363
                 556699************9988876 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 1.2
      DUF815  28 ddLvgidkqkealventeqfleglpannvL 57 
                 d L g+  q +++ e t++f  g++a+ vL
  CTQ30320.1 412 DYLGGFGFQGDKVSEETRRFSGGEKARLVL 441
                 5688899999****************9887 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2    0.0002     0.068      17      57 ..      15      55 ..       8      59 .. 0.87
   2 !    9.8   0.1     0.001      0.34      26      54 ..     335     363 ..     317     371 .. 0.81
   3 ?   -2.7   0.2       6.9   2.3e+03     203     251 ..     556     604 ..     534     611 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
                HHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT CS
        MeaB 17 ellerllakaGraqvvGltGvPGaGkstlvealglelrrrG 57
                 ll++++a+    q+vGl G  G Gkstl++ l  e+ + G
  CTQ30320.1 15 VLLDNATATINPGQKVGLVGKNGCGKSTLLSLLKNEISADG 55
                6788888888899********************99998877 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.001
                 -S-SEEEEEEE-TTSSHHHHHHHHHHHHH CS
        MeaB  26 aGraqvvGltGvPGaGkstlvealglelr 54 
                      ++Gl G  GaGkstl++ l+ el+
  CTQ30320.1 335 LVPGSRIGLLGRNGAGKSTLIKLLAGELQ 363
                 555689***************99988875 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 6.9
                 B--EEEEEBCCCTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH CS
        MeaB 203 WrpkvlktsavegeGidelvdaieehrevlkktGllekrrrerakeelr 251
                  + ++ k  a   + +d+l +++ +  e l ++ l ++ r++  +e l+
  CTQ30320.1 556 QTQPLRKEIARLEKEMDKLNAQLASAEEKLGDSELYDASRKAELTECLQ 604
                 3445666777777777777777777777777777777777766555555 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.7   2.9e-06   0.00098       3      28 ..     561     586 ..     559     591 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 2.9e-06
  Val_tRNA-synt_C   3 ekeraRLeKeLaklekeiervqkKLa 28 
                       ke+aRLeKe++kl+++++++++KL 
       CTQ30320.1 561 RKEIARLEKEMDKLNAQLASAEEKLG 586
                      69**********************97 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1    0.0016      0.56      21      45 ..      32      56 ..      17      61 .. 0.86
   2 ?    6.7   0.2     0.011       3.8      23      42 ..     345     364 ..     340     374 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0016
  Zeta_toxin 21 lgGqpGAGKselaellkdelerqgn 45
                l+G  G+GKs+l++llk+e+ ++g+
  CTQ30320.1 32 LVGKNGCGKSTLLSLLKNEISADGG 56
                89*****************986655 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.011
  Zeta_toxin  23 GqpGAGKselaellkdeler 42 
                 G  GAGKs+l++ll+ el++
  CTQ30320.1 345 GRNGAGKSTLIKLLAGELQP 364
                 899************99974 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.017       5.6       3      24 ..      32      53 ..      30      96 .. 0.86
   2 ?    8.1   0.0      0.01       3.5       3      23 ..     343     363 ..     341     417 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.017
                EESSTTSSHHHHHHHHHHHHTH CS
         AAA  3 lyGppGtGKTllakavakelgv 24
                l+G  G+GK++l + + +e+++
  CTQ30320.1 32 LVGKNGCGKSTLLSLLKNEISA 53
                89************99999864 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.01
                 EESSTTSSHHHHHHHHHHHHT CS
         AAA   3 lyGppGtGKTllakavakelg 23 
                 l G  G GK++l+k +a el+
  CTQ30320.1 343 LLGRNGAGKSTLIKLLAGELQ 363
                 789****************85 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0013      0.43      22      52 ..      29      61 ..      17     186 .. 0.82
   2 ?    4.7   0.1     0.045        15      23      40 ..     341     358 ..     327     368 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0013
                EEEEEESTTSSHHHHHHHHCCSHCCCCC..CBT CS
      NB-ARC 22 vvalvGmgGvGKttlakqilnksdeveg..rFd 52
                 v+lvG+ G+GK+tl++   n+ +   g  +F+
  CTQ30320.1 29 KVGLVGKNGCGKSTLLSLLKNEISADGGsmTFP 61
                589*************98888865544444555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.045
                 EEEEESTTSSHHHHHHHH CS
      NB-ARC  23 valvGmgGvGKttlakqi 40 
                 ++l G+ G GK+tl+k  
  CTQ30320.1 341 IGLLGRNGAGKSTLIKLL 358
                 899***********9865 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.015       4.9       2      22 ..      30      50 ..      29     106 .. 0.80
   2 ?    7.1   0.0     0.017       5.9       2      30 ..     341     369 ..     340     413 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.015
      AAA_28  2 ivitGgestGKTtlleaLaar 22
                + ++G  ++GK+tll+ L+++
  CTQ30320.1 30 VGLVGKNGCGKSTLLSLLKNE 50
                668999***********9965 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.017
      AAA_28   2 ivitGgestGKTtlleaLaargypvvpEa 30 
                 i ++G  ++GK+tl++ La +  pv  E+
  CTQ30320.1 341 IGLLGRNGAGKSTLIKLLAGELQPVSGEI 369
                 6789999***********97755555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1     0.024         8      10      29 ..      32      51 ..      27      61 .. 0.89
   2 !    8.9   0.0    0.0051       1.7      10      38 ..     343     380 ..     339     484 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.024
      AAA_22 10 vtGesGtGKTtllrrlleql 29
                ++G  G+GK+tll  l+++ 
  CTQ30320.1 32 LVGKNGCGKSTLLSLLKNEI 51
                78************999875 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0051
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee.........e 38 
                 + G  G+GK+tl++ l+ +l+ ++              
  CTQ30320.1 343 LLGRNGAGKSTLIKLLAGELQPVSGEIGlakgiklgyF 380
                 5699*************999655444335555555552 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00046      0.16       6      39 ..      19      52 ..      12      70 .. 0.82
   2 ?    3.0   0.1       0.2        68      10      35 ..     334     359 ..     326     376 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00046
                 HHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  6 DalfpivqGqrtlipgafgvGktvisqslskqsn 39
                 +a  +i  Gq+++++g++g+Gk+++++ l ++ +
   CTQ30320.1 19 NATATINPGQKVGLVGKNGCGKSTLLSLLKNEIS 52
                 57789999*****************988877654 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.2
                  -EBTT-EEEEEESTTSSHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  10 pivqGqrtlipgafgvGktvisqsls 35 
                   +v G r++++g +g Gk+++++ l+
   CTQ30320.1 334 NLVPGSRIGLLGRNGAGKSTLIKLLA 359
                  5789*****************98876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0036       1.2      32      83 ..      26      75 ..      14     129 .. 0.78
   2 ?    3.5   0.0      0.14        47      31      53 ..     336     358 ..     329     367 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0036
      AAA_25 32 agelallaGapgtGKttlaldlalava.tGkpwlgpvapeqgkVlyvsaEdse 83
                 g  + l+G  g+GK+tl++ l  +++  G + +    p ++   +v+ E ++
  CTQ30320.1 26 PGQKVGLVGKNGCGKSTLLSLLKNEISaDGGSMTF---PGNWQLAWVNQETPA 75
                5777789*************999999875655554...367788888777765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.14
      AAA_25  31 pagelallaGapgtGKttlaldl 53 
                 + g+ + l G+ g+GK+tl   l
  CTQ30320.1 336 VPGSRIGLLGRNGAGKSTLIKLL 358
                 458889999*********97655 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.3     0.024         8      26      49 ..     253     276 ..     252     279 .. 0.85
   2 !   11.7   3.8   0.00061       0.2      23      54 ..     551     582 ..     549     583 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.024
     DUF1192  26 eerIalLeaEIaRleaaiakkkas 49 
                 ++r+a+L++ I+R +a+ +k+k+ 
  CTQ30320.1 253 QQRVAHLQSYIDRFRAKATKAKQA 276
                 68**************99887665 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00061
     DUF1192  23 eELeerIalLeaEIaRleaaiakkkasraAAe 54 
                 +EL+   + L++EIaRle++++k +a+ a+Ae
  CTQ30320.1 551 AELRSQTQPLRKEIARLEKEMDKLNAQLASAE 582
                 699999999**********************8 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.3      0.37   1.3e+02       1      20 [.      30      48 ..      30      60 .. 0.78
   2 ?   -0.7   0.1       3.8   1.3e+03      50      86 ..     244     280 ..     214     306 .. 0.60
   3 ?   11.7   0.0   0.00059       0.2       1     148 [.     341     497 ..     341     507 .. 0.70
   4 ?    0.0   0.7       2.3   7.8e+02      49      88 ..     541     580 ..     518     620 .. 0.66

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.37
                EEEEEBTTTTHHHHHHHHHT CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlg 20
                + +vG+   GKS++l  Ll+
  CTQ30320.1 30 VGLVGKNGCGKSTLLS-LLK 48
                679***********94.444 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 3.8
                 ...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS- CS
   Dynamin_N  50 avkeelkekekkledfsevreeieketekiagankgi 86 
                 ++++ +++++++  +++ + + ++++  k+++a+++i
  CTQ30320.1 244 QQQAMYESQQQRVAHLQSYIDRFRAKATKAKQAQSRI 280
                 3333344444444444444444444444444444433 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00059
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---C....CS...SSEEEE....T-EB--CHHHHHHHHHHHHHHHTSSSS--SS.. CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeas....eravkeelkek....ekkledfsevreeieketekiagankgiskk.. 89 
                 i ++G   +GKS+++  L ge   p++ ++  ++ ++l +  + + +    +++  ++l       ++ ++++ ++   +  + +k++++  ++s    
  CTQ30320.1 341 IGLLGRNGAGKSTLIKLLAGEL-QPVSGEIGLAKGIKLGYFAQHQLEflraDESPLQHL--ArlapQELEQKLRDYLGGFGFQGDKVSEETRRFSGGek 436
                 67899***************98.9******99999999997777766554422222222..13345555555555555555555555555544443344 PP

                 .-EEEEEEETTS-SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS-CCC-.CHH CS
   Dynamin_N  90 .villkilsllvkgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanhdlsns.eal 148
                   ++l    +++++l l+D P  +   + +q+l++ +i+ + ++++v++  h + ++ + l
  CTQ30320.1 437 aRLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLIRSTtDDL 497
                 4789999999999999999998888888899999999998888888888888765443555 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 2.3
                 S...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS--S CS
   Dynamin_N  49 ravkeelkekekkledfsevreeieketekiagankgisk 88 
                 +a+k++ + +++  ++ + +r+ei + +++ ++ n +  +
  CTQ30320.1 541 QARKDQKRREAELRSQTQPLRKEIARLEKEMDKLNAQLAS 580
                 3333333333666667777777776666666655555444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0079       2.7       3      25 ..      28      49 ..      26      59 .. 0.84
   2 ?    5.7   0.1     0.031        11       4      22 ..     340     358 ..     338     375 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0079
      AAA_24  3 lkiliyGpsgiGKTtlakelgpk 25
                +k+ ++G++g GK+tl++ l ++
  CTQ30320.1 28 QKVGLVGKNGCGKSTLLSLL-KN 49
                7999*************988.44 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.031
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 +i + G +g+GK+tl+k l
  CTQ30320.1 340 RIGLLGRNGAGKSTLIKLL 358
                 799*************987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.055        19       4      17 ..      32      45 ..      30      54 .. 0.85
   2 ?   -1.9   0.1       9.7   3.3e+03      89      99 ..     240     250 ..     198     287 .. 0.55
   3 ?    6.4   0.0     0.027       9.1       5      24 ..     344     363 ..     341     406 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.055
      AAA_33  4 lvGlpGsGKstlae 17
                lvG +G+GKstl+ 
  CTQ30320.1 32 LVGKNGCGKSTLLS 45
                79*********986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 9.7
      AAA_33  89 lklarrlgvpv 99 
                  +la+++ + +
  CTQ30320.1 240 TRLAQQQAMYE 250
                 33333333222 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.027
      AAA_33   5 vGlpGsGKstlaerllkklg 24 
                  G +G+GKstl++ l+ +l+
  CTQ30320.1 344 LGRNGAGKSTLIKLLAGELQ 363
                 6899**********999887 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1     0.003         1       4      25 ..      31      52 ..      28      61 .. 0.82
   2 ?   -0.9   0.1       3.9   1.3e+03      68     126 ..     146     203 ..     123     224 .. 0.70
   3 ?    6.0   0.2      0.03        10       4      24 ..     342     362 ..     339     371 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.003
                EEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  4 ilqGeaGsGKTtLlqklalawa 25
                 l G++G+GK+tLl  l  ++ 
  CTQ30320.1 31 GLVGKNGCGKSTLLSLLKNEIS 52
                589***********98877765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 3.9
                 SS-C...CHHHHCCSCCCEE.....EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEE CS
       NACHT  68 pvse...vwavllelperlL.....lilDglDelvtdlgqkekqpvrtlLselirkkllpeaslllt 126
                 pvs    +w ++l l++ l      l+l   De  ++l+      +  +L++++++   +++ +l++
  CTQ30320.1 146 PVSDfsgGWRMRLNLAQALIcrsdlLLL---DEPTNHLDL----DAVIWLEKWLKG--YTGTLILIS 203
                 3333555888888888888777774554...555555555....567899999998..888877776 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.03
                 EEEC-TTTCHHHHHHHHHHHH CS
       NACHT   4 ilqGeaGsGKTtLlqklalaw 24 
                  l G++G GK+tL++ la ++
  CTQ30320.1 342 GLLGRNGAGKSTLIKLLAGEL 362
                 589***********9998776 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.035        12       2      27 ..      30      55 ..      29      59 .. 0.85
   2 ?    6.5   0.0     0.021       7.1       2      24 ..     341     363 ..     340     370 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.035
                EEEE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkssg 27
                v + G+ G GK+Tl++ + ++++ +g
  CTQ30320.1 30 VGLVGKNGCGKSTLLSLLKNEISADG 55
                7789************9999997765 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.021
                 EEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellk 24 
                 + + G+ G GK+Tl+k ++ +l+
  CTQ30320.1 341 IGLLGRNGAGKSTLIKLLAGELQ 363
                 6788************9999985 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.038        13       2      22 ..      29      49 ..      28      73 .. 0.86
   2 ?    5.8   0.0     0.026       8.9       2      34 ..     340     372 ..     339     391 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.038
                EEEEEESTTSSHHHHHHHHHT CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltg 22
                +v lvG+  +Gk+tl+  l +
  CTQ30320.1 29 KVGLVGKNGCGKSTLLSLLKN 49
                689************988765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.026
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSS CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvt 34 
                 ++ l+G   +Gk+tl+  l+g  q v+   G +
  CTQ30320.1 340 RIGLLGRNGAGKSTLIKLLAGELQPVSGEIGLA 372
                 57899****************999997655555 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2     0.013       4.3       2      24 ..      28      50 ..      27      53 .. 0.89
   2 ?    5.1   0.1     0.052        18       3      24 ..     340     361 ..     338     364 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.013
   PduV-EutP  2 kkilliGkvgsGKttLtqalkge 24
                +k+ l+Gk g+GK tL   lk+e
  CTQ30320.1 28 QKVGLVGKNGCGKSTLLSLLKNE 50
                5888************9999886 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.052
   PduV-EutP   3 killiGkvgsGKttLtqalkge 24 
                 +i l+G+ g+GK tL + l ge
  CTQ30320.1 340 RIGLLGRNGAGKSTLIKLLAGE 361
                 7889*************99886 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.022       7.4       2      27 ..      30      55 ..      29      60 .. 0.87
   2 ?    5.5   0.1     0.045        15       2      34 ..     341     373 ..     340     384 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.022
        MobB  2 lgivgksgsGKTtLleklipelkarg 27
                +g+vgk+g+GK tLl+ l +e++a g
  CTQ30320.1 30 VGLVGKNGCGKSTLLSLLKNEISADG 55
                689*************9999988877 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.045
        MobB   2 lgivgksgsGKTtLleklipelkarglrvgtiK 34 
                 +g+ g++g+GK tL++ l  el+    ++g+ K
  CTQ30320.1 341 IGLLGRNGAGKSTLIKLLAGELQPVSGEIGLAK 373
                 7899**************999988777777665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   0.00018      0.06      27      44 ..      31      48 ..      16      60 .. 0.85
   2 ?   -1.4   0.1       4.2   1.4e+03     198     303 ..     200     324 ..     188     333 .. 0.53
   3 ?    5.1   0.2     0.047        16      28      43 ..     343     358 ..     328     360 .. 0.90
   4 ?   -0.6   0.0       2.5   8.4e+02     323     350 ..     448     475 ..     445     490 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00018
      AAA_15 27 vliGkNnsGKSsileald 44
                 l+GkN++GKS++l +l+
  CTQ30320.1 31 GLVGKNGCGKSTLLSLLK 48
                59************9994 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 4.2
      AAA_15 198 llisakRnvsdedsekkssllgklkekileealqekl............eeelteklkeiqeklkeidkklaeelk.kilkkkidkikkfnykgkknee 283
                  lis +R++ d   +k+  +  +++ ++  ++++ +              e++++   ++q+ ++ +  k ++ ++ ++ +k ++ ++ +   +++n++
  CTQ30320.1 200 ILISHDRDFLDPIVDKIIHIEQQTMFEYTGNYSSFEVqratrlaqqqamYESQQQRVAHLQSYIDRFRAKATKAKQaQSRIKMLERMELIAPAHVDNPF 298
                 567777777776666666666666666666544444466666666666655566666666666666666653333332222222222222222333333 PP

      AAA_15 284 ieik......ddeelplnknGsGvqr 303
                    +       +  l+++k++ G+ +
  CTQ30320.1 299 HFSFrqpeslPNPLLKMEKVSAGYGE 324
                 22225555556666666666666655 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.047
      AAA_15  28 liGkNnsGKSsileal 43 
                 l G+N++GKS+++++l
  CTQ30320.1 343 LLGRNGAGKSTLIKLL 358
                 67***********998 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 2.5
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllke 350
                 ++++ll++EP +hL  ++ + l ++l++
  CTQ30320.1 448 RPNLLLLDEPTNHLDLDMRQALTEALID 475
                 689***********99999999998876 PP

>> DUF1283  Protein of unknown function (DUF1283)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   3.5   0.00036      0.12       6      77 ..     535     607 ..     534     611 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00036
     DUF1283   6 enGdsals.keaarqskeqWnetrsLRnkvnkrvekefdkadkaidk.rdkCeksanvnaYWepntkrCLDrrt 77 
                 e+G+sa+  k++ r++ e   +t+ LR+ +  r eke+dk + ++ + ++k   s+  +a   ++ + CL +++
  CTQ30320.1 535 ESGNSAQArKDQKRREAELRSQTQPLRKEI-ARLEKEMDKLNAQLASaEEKLGDSELYDASRKAELTECLQQQA 607
                 58998875268899999***********99.599********99865377888898889999999999998765 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       3.1   1.1e+03      65      77 ..     169     181 ..     137     185 .. 0.71
   2 ?   10.1   0.1    0.0022      0.73      25      88 ..     423     473 ..     409     475 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 3.1
     SbcCD_C  65 rlvfLDEAFsklD 77 
                 +l++LDE  + lD
  CTQ30320.1 169 DLLLLDEPTNHLD 181
                 6788888888887 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0022
     SbcCD_C  25 elsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllell 88 
                 ++s+++++ SGGek+ l+   la      +++      ++ l++LDE  + lD +++++l e+l
  CTQ30320.1 423 KVSEETRRFSGGEKARLV---LA----LIVWQ------RPNLLLLDEPTNHLDLDMRQALTEAL 473
                 48999999******4333...22....23455......588**************999998876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.029       9.9       1      21 [.      29      49 ..      29      64 .. 0.83
   2 ?    4.6   0.1       0.1        35       2      19 ..     341     358 ..     340     367 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.029
                EEEEESSTTSSHHHHHHCHCT CS
         Roc  1 KvvlvGdsgvGKtsllkrfve 21
                Kv lvG++g GK++ll+ + +
  CTQ30320.1 29 KVGLVGKNGCGKSTLLSLLKN 49
                899************986655 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.1
                 EEEESSTTSSHHHHHHCH CS
         Roc   2 vvlvGdsgvGKtsllkrf 19 
                 + l+G +g+GK++l+k +
  CTQ30320.1 341 IGLLGRNGAGKSTLIKLL 358
                 779***********9865 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3       1.5     5e+02      23      64 ..     237     284 ..     233     288 .. 0.65
   2 ?   12.9   0.3    0.0003       0.1      43      81 ..     547     585 ..     535     588 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 1.5
  Lzipper-MIP1  23 eeklrraLekalssssdgsllslstllpk......kakellkeiallE 64 
                   ++++r a ++a+ +s++    +l++++++      kak+  + i +lE
    CTQ30320.1 237 QRATRLAQQQAMYESQQQRVAHLQSYIDRfrakatKAKQAQSRIKMLE 284
                   677888888888444445566777777755555667777777777776 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.0003
  Lzipper-MIP1  43 lslstllpkkakellkeiallEeevvkLEqkllsLyrkl 81 
                    + ++ l+++++ l+keia lE+e+ kL  +l s + kl
    CTQ30320.1 547 KRREAELRSQTQPLRKEIARLEKEMDKLNAQLASAEEKL 585
                   456677999**********************99876665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.017       5.6      19      48 ..      28      57 ..      19      65 .. 0.81
   2 ?    6.2   0.0     0.022       7.5      23     114 ..     343     475 ..     336     489 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.017
      AAA_30 19 rvavltGpAGtGKttalkalreaweaaggr 48
                + + l+G  G GK+t+l+ l++ + a+gg+
  CTQ30320.1 28 QKVGLVGKNGCGKSTLLSLLKNEISADGGS 57
                457799**************9999888755 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.022
      AAA_30  23 ltGpAGtGKttalkalreaweaa.g............................grviglAptgkaAkvLae...elgieastiakllkrlk........ 81 
                 l G+ G+GK+t++k l+  ++   g                            ++++ lAp++   ++L++   ++g++++ + + ++r          
  CTQ30320.1 343 LLGRNGAGKSTLIKLLAGELQPVsGeiglakgiklgyfaqhqleflradesplQHLARLAPQEL-EQKLRDylgGFGFQGDKVSEETRRFSggekarlv 440
                 67999*********99766665535666666666666666666666666666666666666543.3555542223345666666666555566667777 PP

      AAA_30  82 .grarlepgtllivDEagmv.dtkqlaallkaaek 114
                  +   +++ +ll+ DE     d ++ +al++a+ +
  CTQ30320.1 441 lALIVWQRPNLLLLDEPTNHlDLDMRQALTEALID 475
                 64344555677777775443155555555555555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1      0.02       6.8       4      22 ..      32      50 ..      29      65 .. 0.84
   2 ?    3.9   0.3      0.14        49       4      23 ..     343     362 ..     341     373 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.02
                EE--SSSSHHHHHHHGGGG CS
       AAA_5  4 LvGppGtgKselaerlaaa 22
                LvG+ G+gKs+l   l+  
  CTQ30320.1 32 LVGKNGCGKSTLLSLLKNE 50
                9***********9998765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.14
                 EE--SSSSHHHHHHHGGGGB CS
       AAA_5   4 LvGppGtgKselaerlaaal 23 
                 L+G  G gKs+l++ la  l
  CTQ30320.1 343 LLGRNGAGKSTLIKLLAGEL 362
                 89************999765 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.39   1.3e+02      19      43 ..      27      51 ..      11      61 .. 0.74
   2 ?    6.4   0.0     0.025       8.6      19      43 ..     338     362 ..     315     369 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.39
                TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE 19 gdvilLeGdLGaGKTtlvrglakal 43
                g+ + L G+ G+GK+tl   l +++
  CTQ30320.1 27 GQKVGLVGKNGCGKSTLLSLLKNEI 51
                66799************98777665 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.025
                 TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakal 43 
                 g+ i L G  GaGK+tl++ la +l
  CTQ30320.1 338 GSRIGLLGRNGAGKSTLIKLLAGEL 362
                 5569999************999877 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1    0.0007      0.24      21      39 ..      30      47 ..      11      48 .. 0.77
   2 ?    0.8   0.2       1.8     6e+02     137     180 ..     241     284 ..     198     294 .. 0.50
   3 ?    0.1  17.4       2.8   9.6e+02      24     186 ..     343     614 ..     340     632 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0007
      AAA_23 21 ltlItGpNGaGKTTildAi 39
                +  ++G+NG+GK+T+l  +
  CTQ30320.1 30 V-GLVGKNGCGKSTLLSLL 47
                4.789**********9765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 1.8
      AAA_23 137 flgqerfeefelkdkkerleelekeleeledekkllekleqeke 180
                  l+q+++ +++++++   l+++++ ++ + +++k+ + +++ +e
  CTQ30320.1 241 RLAQQQAMYESQQQRVAHLQSYIDRFRAKATKAKQAQSRIKMLE 284
                 23333333333333333444444444444444444444433333 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 2.8
      AAA_23  24 ItGpNGaGKTTildAiklaLygetprlsrks.................grgfeksdveiese............................gkvkayvel 77 
                 + G NGaGK+T++  +   L   +++ +  +                 +            e                            g++ +  ++
  CTQ30320.1 343 LLGRNGAGKSTLIKLLAGELQPVSGEIGLAKgiklgyfaqhqleflraD------------EsplqhlarlapqeleqklrdylggfgfqGDKVSEETR 429
                 67************99988876665555544444444433333333331............24444444444444444455555555544444444555 PP

      AAA_23  78 tfenkdgry.........................................trsiererelskkkgkttkkaklellei.....deleqfisellgskki 130
                 +f+   + +                                          + ++ +r+l+++ ++  +     ++e+     ++ +q +s++ +++ +
  CTQ30320.1 430 RFSGGEKARlvlalivwqrpnlllldeptnhldldmrqaltealidfegaLVVVSHDRHLIRSTTDDLYLVHDGKVEPfdgdlEDYQQWLSDSQKQESQ 528
                 565555544999999999999**************************9999999999999999999999999999999966654444444443333322 PP

      AAA_23 131 ........ilnlilflgqerfeefelkdkke....rleelekeleeledekkllekl...................eqekekekele 186
                          ++  + ++q+r e ++++++ +    +++ leke+++l+++    e++                   +q+ + +  le
  CTQ30320.1 529 sgeppkesGNSAQARKDQKRREAELRSQT-QplrkEIARLEKEMDKLNAQLASAEEKlgdselydasrkaelteclQQQASAKSGLE 614
                 44455533222222333333333333222.124446666666666666555555555677774444444444444434444444444 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.4     0.035        12      10      46 ..     240     276 ..     239     299 .. 0.82
   2 ?   10.1   0.9    0.0029      0.98      22      51 ..     560     589 ..     549     601 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.035
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
        SlyX  10 iklafqedtieeLndvvaeqqqqidrlqrqlrllaer 46 
                 ++la q+ + e+ ++ va+ q  idr +++  + ++ 
  CTQ30320.1 240 TRLAQQQAMYESQQQRVAHLQSYIDRFRAKATKAKQA 276
                 69999999999**********9999999987766654 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0029
                 HHHHHHHHHHHHHHHHHHHHHHHHT-XXXX CS
        SlyX  22 Lndvvaeqqqqidrlqrqlrllaerlkele 51 
                 L +++a+ ++++d+l +ql+  +e+l + e
  CTQ30320.1 560 LRKEIARLEKEMDKLNAQLASAEEKLGDSE 589
                 555666666666666666666666664443 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1     0.012       4.1      24      52 ..      28      55 ..       4      60 .. 0.85
   2 ?   -1.9   0.1       8.5   2.9e+03      94     185 ..     231     275 ..     206     293 .. 0.48
   3 ?    9.2   0.1    0.0035       1.2      23      47 ..     338     362 ..     328     369 .. 0.85
   4 ?   -1.7   0.6       7.3   2.5e+03     132     198 ..     522     583 ..     510     603 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.012
       DUF87 24 rHlAilgsTGsGKSntvavLleellekkg 52
                + ++ +g+ G GKS++ ++L +e+ + +g
  CTQ30320.1 28 QKVGLVGKNGCGKSTLLSLLKNEISA-DG 55
                56899******************994.44 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 8.5
       DUF87  94 pwsldpeelldlleeddkpaaavqrsvleealdqakakeekeklssdepveklleelkkekeelrklknqaiarlldkledllrkggsfsns 185
                 ++s++++   +l+    ++                                              ++++q  a l++ ++++  k  +  ++
  CTQ30320.1 231 YSSFEVQRATRLAQQ--QAM--------------------------------------------YESQQQRVAHLQSYIDRFRAKATKA-KQ 275
                 444444444444444..222............................................2222222333333333333333333.22 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0035
       DUF87  23 trHlAilgsTGsGKSntvavLleel 47 
                   +++ lg+ G+GKS+++++L  el
  CTQ30320.1 338 GSRIGLLGRNGAGKSTLIKLLAGEL 362
                 56899****************8776 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 7.3
       DUF87 132 eekeklssdepveklleelkkekeelrklknqaiarlldkledllrkggsfsnsstdlialllekle 198
                  +k++ +s ep +++ ++ +     +rk++++ +a+l ++ + l ++ +   +++++l+a+l   +e
  CTQ30320.1 522 SQKQESQSGEPPKESGNSAQ-----ARKDQKRREAELRSQTQPLRKEIARLEKEMDKLNAQLASAEE 583
                 44444444444444444444.....555555555555555555555555555555555555544444 PP

>> DUF4094  Domain of unknown function (DUF4094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.6    0.0057       1.9      36      85 ..     530     581 ..     514     584 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0057
     DUF4094  36 eelklvsedcds..kdaesrskdilgevskthkaiqtLdktissLemeLaaa 85 
                  e    s + ++  kd+++r+ ++ ++++  +k+i +L+k +++L  +La+a
  CTQ30320.1 530 GEPPKESGNSAQarKDQKRREAELRSQTQPLRKEIARLEKEMDKLNAQLASA 581
                 22333555556564666666655555************************98 PP

>> FliD_N  Flagellar hook-associated protein 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.8   0.00023     0.077      14      56 ..     233     275 ..     210     289 .. 0.87
   2 ?   -0.7   1.0       7.3   2.5e+03      45      63 ..     558     577 ..     515     613 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00023
                 XXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHXX CS
      FliD_N  14 kaerakldkleqkktklewkqsayrelnsklsnlksalsalsk 56 
                 + e ++ ++l q+++ +e++q+ +  l+s ++ ++ ++++ ++
  CTQ30320.1 233 SFEVQRATRLAQQQAMYESQQQRVAHLQSYIDRFRAKATKAKQ 275
                 56889999****************************8863333 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 7.3
                 HHHHHHHHHHXX.GGGGGXE CS
      FliD_N  45 snlksalsalsk.sstfsak 63 
                 + l+++++ l+k  ++++a+
  CTQ30320.1 558 QPLRKEIARLEKeMDKLNAQ 577
                 33333222222222222221 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.038        13       5      22 ..      34      51 ..      31      76 .. 0.90
   2 ?   -0.5   0.7       2.9   9.7e+02      43      82 ..     246     285 ..     218     288 .. 0.80
   3 ?    4.7   0.1     0.071        24       5      22 ..     345     362 ..     341     369 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.038
                ESTTSSHHHHHHHHHCCS CS
         dNK  5 GnIgaGKstlvklLskkl 22
                G+ g+GKstl++lL++++
  CTQ30320.1 34 GKNGCGKSTLLSLLKNEI 51
                7779***********986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.9
                 HHHHHSHHHHHHHHHHHHHHHHHHHHHCHHSSS-EEEEES CS
         dNK  43 ekfYkdpsrwsfalqtyvllsrlkqqlealatkqvvvleR 82 
                 + +Y+  ++  ++lq y+   r k++++  a++++++leR
  CTQ30320.1 246 QAMYESQQQRVAHLQSYIDRFRAKATKAKQAQSRIKMLER 285
                 6799999999999999999999999988888999999998 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.071
                 ESTTSSHHHHHHHHHCCS CS
         dNK   5 GnIgaGKstlvklLskkl 22 
                 G  gaGKstl+klL+ +l
  CTQ30320.1 345 GRNGAGKSTLIKLLAGEL 362
                 7779**********9887 PP

>> Trimer_CC  Trimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       8.7   2.9e+03      27      41 ..      90     104 ..      88     106 .. 0.82
   2 ?   10.4   1.9    0.0011      0.37       2      33 ..     545     576 ..     544     585 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 8.7
                 HHHHHHHHHHHHHHH CS
   Trimer_CC  27 elrkLqatVQelQkR 41 
                 e r+L a  Q   +R
  CTQ30320.1  90 EYRQLEAALQLANER 104
                 78******9987777 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0011
                 XXXXXXXXXXXXXXXXXXX--HHHHHHHHHHH CS
   Trimer_CC   2 dssrrratpeasgtpssdavSRLEEelrkLqa 33 
                 d +rr a+ ++++ p    + RLE e+ kL+a
  CTQ30320.1 545 DQKRREAELRSQTQPLRKEIARLEKEMDKLNA 576
                 678999************************99 PP

>> DUF3287  Protein of unknown function (DUF3287)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       9.7   3.3e+03      31      74 ..     237     280 ..     223     291 .. 0.59
   2 ?   10.1   0.5    0.0014      0.49      68     101 ..     547     580 ..     539     603 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 9.7
     DUF3287  31 erasvkfphaafkylppkdkeealdfidkvvekHrrlcderqkl 74 
                 +ra+ ++  +a++ + ++       +id    k  ++ + + ++
  CTQ30320.1 237 QRATRLAQQQAMYESQQQRVAHLQSYIDRFRAKATKAKQAQSRI 280
                 55666666677755555555555566666665555544444333 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0014
     DUF3287  68 cderqklgkkrqtleaRiarveRklreleseprd 101
                   + ++l+ + q l + iar+e+++ +l++++  
  CTQ30320.1 547 KRREAELRSQTQPLRKEIARLEKEMDKLNAQLAS 580
                 334579***********************99875 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.069        23      23      38 ..      34      49 ..      15      79 .. 0.80
   2 ?   -1.9   0.2       2.9   9.7e+02     291     316 ..     245     269 ..     224     295 .. 0.48
   3 ?    5.6   0.1     0.016       5.3      23      38 ..     345     360 ..     339     372 .. 0.88
   4 ?    4.2   2.4      0.04        14     446     481 ..     550     582 ..     500     631 .. 0.52

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.069
      AAA_13 23 GwNGaGKTtLSrllrs 38
                G+NG GK+tL +ll++
  CTQ30320.1 34 GKNGCGKSTLLSLLKN 49
                9*********999997 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.9
      AAA_13 291 liekveskkselleklkavsdeasen 316
                  ++ +es++ + ++ l++ +d+ +++
  CTQ30320.1 245 QQAMYESQQ-QRVAHLQSYIDRFRAK 269
                 333333333.2223333333321111 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.016
      AAA_13  23 GwNGaGKTtLSrllrs 38 
                 G+NGaGK+tL +ll+ 
  CTQ30320.1 345 GRNGAGKSTLIKLLAG 360
                 9*********999986 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.04
      AAA_13 446 ikeLekqlrdekpaaeeinkeLkafGlgeleLkfee 481
                  +eL+ q++  ++ ++ ++ke+ +    +++L+ +e
  CTQ30320.1 550 EAELRSQTQPLRKEIARLEKEMDKL---NAQLASAE 582
                 2333333333333333333333333...22332222 PP

>> Cytochrom_B562  Cytochrome b562
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.1      0.12        39      17      44 ..     251     278 ..     239     288 .. 0.82
   2 ?    6.7   1.9     0.034        11      47      88 ..     553     598 ..     510     608 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.12
  Cytochrom_B562  17 akaddaeelkkalkelraaaedakeatp 44 
                     ++++ ++ l+++++++ra a++ak+a+ 
      CTQ30320.1 251 SQQQRVAHLQSYIDRFRAKATKAKQAQS 278
                     388999******************9875 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.034
  Cytochrom_B562  47 lek....dseeqkdYqeGldklidqldkaealakagkleeakaalk 88 
                     l+      ++e +  ++ +dkl +ql++ae+++   +l +a+  ++
      CTQ30320.1 553 LRSqtqpLRKEIARLEKEMDKLNAQLASAEEKLGDSELYDASRKAE 598
                     222444579999***********************99999966554 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.5    0.0031       1.1      25      72 ..     241     287 ..     227     291 .. 0.85
   2 ?    6.5   4.2      0.02       6.8      16      51 ..     540     575 ..     537     585 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0031
                 HHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXXXXXXXX CS
       DivIC  25 eiaalqaelaklkaeneeLeaevkdLksdedyieerARselglvkpgE 72 
                  +a++qa +++++++ + L++ +++ +  ++  +++A s+  +    E
  CTQ30320.1 241 RLAQQQAMYESQQQRVAHLQSYIDRFR-AKATKAKQAQSRIKMLERME 287
                 5799**********************5.**********9999987666 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.02
                 XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  16 llaykqlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                  +a+k++k+  a+l  + + l++e+++Le+e ++L+
  CTQ30320.1 540 AQARKDQKRREAELRSQTQPLRKEIARLEKEMDKLN 575
                 567778888888888888888888888888888884 PP

>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.4     0.026       8.9      38      85 ..     234     281 ..     212     288 .. 0.79
   2 ?    6.1   4.0     0.022       7.4       4      39 ..     551     586 ..     548     630 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.026
                 T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Snf7  38 gnkdralllLKqkkryekqldqldnqlanleqvslaienlksnkevln 85 
                  + +ra +l+ q  +ye+q +++   ++ ++  + ++  +k++++ ++
  CTQ30320.1 234 FEVQRATRLAQQQAMYESQQQRVAHLQSYIDRFRAKATKAKQAQSRIK 281
                 4489****************************9999988888876554 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT- CS
        Snf7   4 rsLrkaerkldkkqeslekkikkleaelkklakkgn 39 
                  +Lr +++ l k++ +lek+  kl+a+l+   +k  
  CTQ30320.1 551 AELRSQTQPLRKEIARLEKEMDKLNAQLASAEEKLG 586
                 68999**********************998888744 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.8      0.11        36     192     233 ..     238     277 ..     209     290 .. 0.52
   2 ?    6.7   8.2     0.012         4     117     165 ..     539     587 ..     524     633 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.11
     DUF4407 192 ldaaqaelaelkakldatarlaalraelaeleaerakeraas 233
                  +++ a+ +++ ++  +++r+a+l++ +++ +a+++k+++a+
  CTQ30320.1 238 RATRLAQQQAMYES--QQQRVAHLQSYIDRFRAKATKAKQAQ 277
                 22222222222222..44444444444444444444444433 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.012
     DUF4407 117 qeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqk 165
                 +++a++ +++ +a+l+++++ l+++ia+l++e+d+++a+l+ +++++ +
  CTQ30320.1 539 SAQARKDQKRREAELRSQTQPLRKEIARLEKEMDKLNAQLASAEEKLGD 587
                 4455555555556677888888888888888888888888777777643 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.4       1.8   6.1e+02      60      92 ..     248     278 ..     215     296 .. 0.63
   2 ?    8.8   3.6    0.0039       1.3       9      74 ..     551     613 ..     519     630 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.8
                 XXXXX.....XXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  60 ieaslkqqeklqhlkenlpshlpkktaassaee 92 
                 + +   qq+++ hl++ + ++  k t+a++a++
  CTQ30320.1 248 MYE--SQQQRVAHLQSYIDRFRAKATKAKQAQS 278
                 222..2344477777777766555555555433 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0039
                 ...............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXX CS
        SKA1   9 vslrainqdpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlk 74 
                  +lr  +q++ l ++ +  +e+e+  l+ +l++ ++ l + e    + k+e+ ++l+qq +++  +
  CTQ30320.1 551 AELR--SQTQPL-RKEIARLEKEMDKLNAQLASAEEKLGDSELYDASRKAELTECLQQQASAKSGL 613
                 4566..555555.8999***************************************9999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1836  (0.102404); expected 358.6 (0.02)
Passed bias filter:                      917  (0.0511462); expected 358.6 (0.02)
Passed Vit filter:                       202  (0.0112667); expected 17.9 (0.001)
Passed Fwd filter:                        72  (0.00401584); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              53  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.44
# Mc/sec: 4338.00
//
Query:       CTQ30321.1  [L=340]
Description: putative hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-20   73.7   0.0    2.2e-20   73.4   0.0    1.1  1  Abhydrolase_1  alpha/beta hydrolase fold
    6.5e-08   32.1   0.0    9.5e-08   31.6   0.0    1.2  1  Hydrolase_4    Serine aminopeptidase, S33
    0.00041   19.6   0.0       0.62    9.1   0.0    2.1  2  DUF2048        Abhydrolase domain containing 18
     0.0024   17.5   0.0     0.0031   17.1   0.0    1.2  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
  ------ inclusion threshold ------
      0.027   13.9   0.3          7    6.1   0.0    2.7  3  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   6.2e-24   2.2e-20       1     255 [.      74     314 ..      74     316 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 6.2e-24
                    SEEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH.. CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey.. 94 
                    p lv++hGl gs+++++++gl+ a  ++g+  +++  rG+   + +   i +  +t +  ++l++++  +g  + + vG+S+GG +   ++ae   
     CTQ30321.1  74 PRLVVFHGLEGSLHSPYAHGLIHAAMQRGWLGVVMHFRGCSGEPNRNHRIYHSGETEDGTWFLHWLKREFGPAPTAAVGYSLGGNMLGCLLAEEgd 169
                    679*********************9999********************999999******************************988888888834 PP

                    GGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHH CS
  Abhydrolase_1  95 perVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksie 190
                      + +a v ++a   +++l+ + ++ +k+f +  ++y     + +a ++l  + + l++ +r       ++k +r+ +++ d  + + +g + +++
     CTQ30321.1 170 RCPLDAAVIVSA---PFMLEACSYHMDKGFSRVYQRYLLNLLKANASRKLKAYPGSLPVDLR-------QLKGMRRIREFDDMITAKIHGFADALD 255
                    445589999999...***********************************************.......9************************** PP

                    HHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 191 qwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafle 255
                    ++ +   +++l ++ +      ptl+i++ +Dp ++++++   +ql  ++++   +++gH  f  
     CTQ30321.1 256 YYRQCSAMPRLSDITK------PTLIIHAKDDPFMDHHSIPPQEQLPANVEYQLTEQGGHVGFVS 314
                    ***********99999......**************9999999888888***********99875 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   2.6e-11   9.5e-08       3     209 ..      72     288 ..      70     311 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 2.6e-11
  Hydrolase_4   3 pkavvvlvHGlaehs.gryae.laeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllryp 98 
                  +k  +v++HGl  +  + ya+ l++a  ++G+  + +  rG   ++ +r h    +  ++D   f++ +k+e + +p   +G S+GG +   +l+++ 
   CTQ30321.1  72 HKPRLVVFHGLEGSLhSPYAHgLIHAAMQRGWLGVVMHFRGCSGEP-NRNHRIYHSGETEDGTWFLHWLKREFGPAPTAAVGYSLGGNMLGCLLAEEG 168
                  78899*****976541457777********************9995.4444444555689***************************99888875555 PP

  Hydrolase_4  99 d..kva.glilsaPalkikakl...k.appllkl..llkllgkllpklqvsnnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrle..e 185
                  d   ++ ++i+saP++  + ++   k ++++++   l+ l +++ +kl+   ++++ +l + + +++  e d +++ k  ++ ++++ld   ++    
   CTQ30321.1 169 DrcPLDaAVIVSAPFMLEACSYhmdKgFSRVYQRylLNLLKANASRKLKAYPGSLPVDLRQLKGMRRIREFDDMITAK--IHGFADALDYYRQCSamP 264
                  545788899999999877776655544555544443333444555566666666777777777777766667766554..466888888887775226 PP

  Hydrolase_4 186 raakitlPllllhGeaDkvvdpea 209
                  r ++it P+l++h+++D+ +d+  
   CTQ30321.1 265 RLSDITKPTLIIHAKDDPFMDHHS 288
                  89999***************9754 PP

>> DUF2048  Abhydrolase domain containing 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00026      0.94     165     189 ..     134     159 ..     123     183 .. 0.88
   2 !    9.1   0.0   0.00017      0.62     296     335 ..     273     313 ..     256     334 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00026
     DUF2048 165 vllhwlere.GyGplgltGlSmGGhm 189
                   lhwl+re G+ p +  G S+GG m
  CTQ30321.1 134 WFLHWLKREfGPAPTAAVGYSLGGNM 159
                 579*********************99 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00017
     DUF2048 296 iivvaAkdDayvpresvaslqeiwpgsevryld.gGHvsay 335
                   ++ AkdD ++ ++s+   +++ +++e +  + gGHv ++
  CTQ30321.1 273 TLIIHAKDDPFMDHHSIPPQEQLPANVEYQLTEqGGHVGFV 313
                 56799******************9999999965379*9875 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   8.6e-07    0.0031      52     268 ..      90     310 ..      40     311 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.6e-07
                    H.......HHHTT-EEEEEE-TTSTTS-S---TT....TTTHHHHHHHHHHHHHHCTTEEEEEEEEEECHHHHH.HHHHCTT--T.TEEEEEEECE CS
  Peptidase_S15  52 v.......fvarGYavVvqdvrGtggSeGeftvg....dsdeaedgadvidWlakqpwsnGkVgmtGiSYlGtt.qllaaatgvp.alkaivpeaa 134
                             ++rG++ Vv   rG     Ge +      +s e+edg   ++Wl ++ +     +++G S +G +   l+a++g++  l+a+v+++a
     CTQ30321.1  90 YahglihaAMQRGWLGVVMHFRGCS---GEPNRNhriyHSGETEDGTWFLHWLKRE-FGPAPTAAVGYSLGGNMlGCLLAEEGDRcPLDAAVIVSA 181
                    0444455578899999999999974...45444444669**************986.55556789999***97634555555544389*****999 PP

                    -S-TCCC.CSECTTEEBCCHHHHHHHHHCCCCHHTSSS-STTHHHHHHHHHHCHCCCCCCTTHHHTHHHHCCCC--SSSHHHHTT-HHHHHCT--S CS
  Peptidase_S15 135 isdlydd.yyregGlvrapgglswedldllaealtsrradegdalkaaaryeaasdellaeldrqtpveselletgdydafWkdrnlsedadkvka 229
                     + l    y++++G+ r+ + +       l +a  sr+ ++  +    +  + ++    +e d+  ++  +++   d  ++ ++ ++  +++ ++ 
     CTQ30321.1 182 PFMLEACsYHMDKGFSRVYQRYLL----NLLKANASRKLKAYPGSLPVDLRQLKGMRRIREFDD--MITAKIHGFADALDYYRQCSAMPRLSDITK 271
                    8888887799*****999887666....445555555555544433333323333444444444..69999999********************** PP

                    -EEEEEECCSSTTC.CHHHHHHHHHCCTT-EEEEECECTT CS
  Peptidase_S15 230 pvllvgGwnDwnvk.ngaiklyealkapgvklilgpwtHv 268
                    p+l++++  D +++ +++i   e+l+a+ ++ +  ++ Hv
     CTQ30321.1 272 PTLIIHAKDD-PFMdHHSIPPQEQLPANVEYQLTEQGGHV 310
                    **********.***9************9888888999997 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.27   9.7e+02     170     170 ..     100     100 ..      40     146 .. 0.52
   2 ?    5.1   0.2    0.0038        14      44      88 ..     128     170 ..      90     203 .. 0.66
   3 ?    6.1   0.0    0.0019         7     112     155 ..     244     282 ..     231     337 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.27
                   H CS
  Peptidase_S9 170 q 170
                   q
    CTQ30321.1 100 Q 100
                   2 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0038
                   HHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG CS
  Peptidase_S9  44 efdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdl 88 
                   e +D    + +l  e    +   a+ G S GG + g++l++++d+
    CTQ30321.1 128 ETEDGTWFLHWLKRE--FGPAPTAAVGYSLGGNMLGCLLAEEGDR 170
                   555555555555332..235567899*************988875 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0019
                   HHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-S CS
  Peptidase_S9 112 teeymewgnpeeneegykelspyspldnvkaypplLlihGlaDd 155
                   t++  ++ +     ++y+++s++  l    +++p+L+ih+  D 
    CTQ30321.1 244 TAKIHGFAD---ALDYYRQCSAMPRLSD--ITKPTLIIHAKDDP 282
                   554445444...5899************..**********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       262  (0.0146132); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2724.80
//
Query:       CTQ30322.1  [L=72]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      4e-36  122.9   0.0    4.8e-36  122.7   0.0    1.0  1  UPF0270          Uncharacterised protein family (UPF0270)
     0.0031   17.4   0.0     0.0045   16.8   0.0    1.2  1  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2


Domain annotation for each model (and alignments):
>> UPF0270  Uncharacterised protein family (UPF0270)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.7   0.0   5.4e-40   4.8e-36       1      67 [.       1      67 [.       1      68 [. 0.99

  Alignments for each domain:
  == domain 1  score: 122.7 bits;  conditional E-value: 5.4e-40
                EE--GGGS-HHHHHHHHHHHHH--------.---HHHHHHHHHHHHHTTSEEEEE-TTT--EEEEEG CS
     UPF0270  1 miIPyqqLepetLenlieefvlregtDyGeqelsleekveqvkqqLksgeavivfselhesvnivpk 67
                miIP+q+L+petL+nlie+fvlregtDyGe+e sl++kv++vkqqLk+geav+v+selhe+vni+p+
  CTQ30322.1  1 MIIPWQDLDPETLDNLIESFVLREGTDYGEYERSLADKVADVKQQLKRGEAVLVWSELHETVNIMPR 67
                9****************************************************************97 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     5e-07    0.0045       3      39 ..      16      52 ..      15      54 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5e-07
  HU-CCDC81_bac_2  3 LansiaeaegisyeeAlqkiekeveelkqeLeeegrv 39
                     L++s +  eg++y e  + +++ v+++kq+L++++ v
       CTQ30322.1 16 LIESFVLREGTDYGEYERSLADKVADVKQQLKRGEAV 52
                     889999**************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 624.53
//
Query:       CTQ30323.1  [L=289]
Description: phosphoribulokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-75  253.7   0.0    1.3e-75  253.4   0.0    1.1  1  PRK         Phosphoribulokinase / Uridine kinase family
  ------ inclusion threshold ------
       0.13   11.5   0.0       0.93    8.7   0.0    1.9  2  Zeta_toxin  Zeta toxin


Domain annotation for each model (and alignments):
>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.4   0.0   1.5e-79   1.3e-75       1     197 []       7     214 ..       7     214 .. 0.99

  Alignments for each domain:
  == domain 1  score: 253.4 bits;  conditional E-value: 1.5e-79
         PRK   1 vIgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleerkrakekevsflspeandfdllyevlkelkegkkvdkpiYsheteea 99 
                 vI+v+gsSGaG+tt++ +++kif++ +++aae+egdsf+r++r e+d++++++++++ k++s+++peandf+ll++++  ++  +k+++++Y h+++ea
  CTQ30323.1   7 VIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSFHRYTRPEMDMAIRKARDQG-KHISYFGPEANDFGLLEQTFVDYGRHGKGQSRKYLHTYDEA 104
                 8******************************************************99.9**************************************** PP

         PRK 100 ap.........dkeeliegadvlviEGlhalyder...vaelldlkiyvdisidlelarklqRDiaeRGrsleavldsilrrkpdyvnyikpqfseadl 186
                 +p         ++++l+e++dvl++EGlh+++++    va+++dl ++v+++++le+++kl+RD++eRG+s+eav+ds++r+++dy+n+i+pqfs++++
  CTQ30323.1 105 VPwnqvpgtftPWQPLPEPTDVLFYEGLHGGVVTPqhdVASHVDLLVGVVPIVNLEWIQKLIRDTSERGHSREAVMDSVVRSMEDYINFITPQFSRTHI 203
                 **********************************9999************************************************************* PP

         PRK 187 iiqrvptvdvs 197
                 ++qrvptvd+s
  CTQ30323.1 204 NFQRVPTVDTS 214
                 *********96 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0001      0.93      18      76 ..       7      69 ..       1      82 [. 0.74
   2 ?    0.4   0.0     0.037   3.3e+02      82     112 ..     160     192 ..     146     200 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0001
  Zeta_toxin 18 lillgGqpGAGKselaellkdele.rqgnvvrldpDdlRelh.Peyeeilka..dpkkaselt 76
                +i + G++GAG ++++ ++++ ++  +  + ++++D++ ++  Pe + ++++  d+ k  +++
  CTQ30323.1  7 VIAVTGSSGAGTTTTSLAFRKIFAqLNLHAAEVEGDSFHRYTrPEMDMAIRKarDQGKHISYF 69
                46789*************999987678899********8875377776555423444455555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.037
  Zeta_toxin  82 elvekllqeaieng..yniivegtlrspdvvkk 112
                 e+ +kl+  + e+g  ++ ++++  rs ++  +
  CTQ30323.1 160 EWIQKLIRDTSERGhsREAVMDSVVRSMEDYIN 192
                 688888888888873345888988888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 2506.47
//
Query:       CTQ30324.1  [L=134]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-19   70.8   0.1    1.3e-19   70.5   0.1    1.1  1  OsmC      OsmC-like protein
  ------ inclusion threshold ------
      0.026   14.4   0.0      0.031   14.2   0.0    1.1  1  DUF5086   Domain of unknown function (DUF5086)


Domain annotation for each model (and alignments):
>> OsmC  OsmC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.1   1.5e-23   1.3e-19       2      99 ..      30     127 ..      28     128 .. 0.94

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 1.5e-23
                 TXSSB-HHHHHHHHHHHHHHHHHHHHTCCCT---SCEEEEEEEEEECCECTCEEEEEEEEEEE-SS-H..HHHHHHHHHH.HHHSHHHHHHCT-SSSEE CS
        OsmC   2 dgsgpsPeelllaalasCfaitlravakkkgikledleveveaerdpegakgiteirlkvevkipgadseeklkklleka.ekrCpvsntlkngvkvel 99 
                 ++++psP+e++l+a ++C ai++ ++++k + +++++ev+++ er +e+++ +t+i+l++ v +++a +++ + ++++++ ek+C+v+ +l+++v++++
  CTQ30324.1  30 GDKAPSPMEMVLMAAGGCSAIDVVSILQKGRHDVTNCEVKLTSERREEAPRLFTHINLHFIV-TGKALKDAAVSRAVDLSaEKYCSVALMLEKAVNITH 127
                 578****************************************999998889**********.6777778*********99***************986 PP

>> DUF5086  Domain of unknown function (DUF5086)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.5e-06     0.031      26      90 ..      39     103 ..      21     118 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.5e-06
                 EEE---TTEEEEEEES-GGGHHHHS.SEEEEEEEEETT--TT--EEEEEEEEE-HHHHHHH--EE CS
     DUF5086  26 iilsvsPklvrWaivhkvsdeaeddpyyhvevierrkdtkpWqfkrlaahlavtekalrasrvak 90 
                 ++l ++ + +   +v  +++ ++d     v++   r++  p  f ++  h++vt kal+ + v++
  CTQ30324.1  39 MVLMAAGGCSAIDVVSILQKGRHDVTNCEVKLTSERREEAPRLFTHINLHFIVTGKALKDAAVSR 103
                 67778888888888999999999*999********************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       268  (0.0149478); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 1191.30
//
Query:       CTQ30325.1  [L=210]
Description: DNA-binding transcriptional dual regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-24   84.7   0.0    5.4e-24   84.1   0.0    1.3  1  cNMP_binding  Cyclic nucleotide-binding domain
    4.3e-14   52.2   0.1    2.2e-13   50.0   0.0    2.0  2  HTH_Crp_2     Crp-like helix-turn-helix domain
      5e-09   35.7   0.1    9.2e-09   34.8   0.1    1.5  1  Crp           Bacterial regulatory proteins, crp family
    0.00016   21.5   0.0     0.0012   18.7   0.0    2.1  2  MarR_2        MarR family
    0.00053   19.7   0.0     0.0014   18.4   0.0    1.8  1  HTH_23        Homeodomain-like domain
     0.0011   18.5   0.1       0.16   11.4   0.1    2.3  2  RepL          Firmicute plasmid replication protein (RepL)
     0.0014   18.6   0.0     0.0068   16.3   0.0    2.1  3  HTH_36        Helix-turn-helix domain
     0.0074   16.2   0.1      0.029   14.3   0.1    1.9  2  MarR          MarR family
     0.0088   15.6   0.2      0.023   14.2   0.2    1.8  1  HTH_24        Winged helix-turn-helix DNA-binding
  ------ inclusion threshold ------
      0.021   14.4   0.8      0.057   12.9   0.2    2.0  3  Sigma70_r4    Sigma-70, region 4
      0.057   13.5   0.1       0.23   11.5   0.1    2.1  1  HTH_7         Helix-turn-helix domain of resolvase
      0.091   13.1   0.2       0.85   10.0   0.0    2.3  2  Rrf2          Transcriptional regulator
        0.1   13.1   0.0       0.16   12.4   0.0    1.4  1  HhH-GPD       HhH-GPD superfamily base excision DNA repair pr
       0.11   12.5   0.4       0.24   11.4   0.1    1.8  2  HTH_11        HTH domain
       0.12   12.1   0.1       0.47   10.2   0.0    2.0  2  HTH_38        Helix-turn-helix domain
       0.13   12.2   0.0       0.31   10.9   0.0    1.6  2  DUF4868       Domain of unknown function (DUF4868)
       0.14   12.8   0.1       0.29   11.8   0.1    1.5  1  RPA_C         Replication protein A C terminal


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0   5.2e-27   5.4e-24       3      88 ..      23     109 ..      21     110 .. 0.96

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 5.2e-27
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHH.HTS--SSEEEESSTEEEEEEEHHHHHHHHHH CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelall.tgeprtatvvAltdsellalprddflellqq 88 
                   +++  +++++qG++a++ly++++G+v+v  ++e+gke++l +l++Gd++Gel+l+ +g+ r+a v+A+t +e+++++ ++f++l+q 
    CTQ30325.1  23 KYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFeEGQERSAWVRAKTACEVAEISYKKFRQLIQV 109
                   7999***************************************************98899************************985 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.2   1.3e+03      25      38 ..     119     132 ..     106     135 .. 0.84
   2 !   50.0   0.0   2.1e-16   2.2e-13       1      59 [.     142     206 ..     142     207 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.2
                 HHHHHHTTSSHHHH CS
   HTH_Crp_2  25 eelAsmlGltretv 38 
                  ++A++l +t e v
  CTQ30325.1 119 SQMARRLQVTSEKV 132
                 58999999998877 PP

  == domain 2  score: 50.0 bits;  conditional E-value: 2.1e-16
                 HHHHHHHHHHHCTTTC.....EEEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ETEEEEE CS
   HTH_Crp_2   1 qRlArfLlrlaeragg.....eielpltqeelAsmlGltretvsrilseLkreglis.rgrriri 59 
                 +R+A++Ll+la+++++       ++++t++e+++++G +retv ril+ L++++lis  g++i++
  CTQ30325.1 142 GRIAQTLLNLAKQPDAmthpdGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISaHGKTIVV 206
                 6*********88855233345689*********************************77755775 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.1   8.7e-12   9.2e-09       1      32 []     166     197 ..     166     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 8.7e-12
                 EE--HHHHHHHHTS-HHHHHHHHHHHHHTTSE CS
         Crp   1 LpmSRqdIAdylGlTrETVSRlLtrLrekGLI 32 
                 ++ +Rq+I+  +G++rETV+R L+ L+ + LI
  CTQ30325.1 166 IKITRQEIGQIVGCSRETVGRILKMLEDQNLI 197
                 578***********************999888 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       0.8   8.4e+02      25      35 ..     119     129 ..     111     135 .. 0.84
   2 !   18.7   0.0   1.1e-06    0.0012       1      51 [.     138     197 ..     138     202 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.8
                 HHHHHHHTSSH CS
      MarR_2  25 gelarrlglsk 35 
                 ++ arrl+++ 
  CTQ30325.1 119 SQMARRLQVTS 129
                 7889***9986 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.1e-06
                 TT--HHHHHHHHHHHCTTTS.........EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSE CS
      MarR_2   1 lgltpaqarvLaaLgrrpgr.........dltvgelarrlglsksavsrilkrLvaaGLv 51 
                 l++t+ +a+ L++L+  p+          ++t +e+ +  g s+ +v rilk L+++ L+
  CTQ30325.1 138 LDVTGRIAQTLLNLAKQPDAmthpdgmqiKITRQEIGQIVGCSRETVGRILKMLEDQNLI 197
                 5899***********************9999****************************9 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.3e-06    0.0014      17      40 ..     167     190 ..     145     198 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.3e-06
      HTH_23  17 GlsvreIAreLgvsrrTvyrwlkr 40 
                 +++++eI ++ g+sr Tv r+lk 
  CTQ30325.1 167 KITRQEIGQIVGCSRETVGRILKM 190
                 789*******************96 PP

>> RepL  Firmicute plasmid replication protein (RepL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.014        14     102     131 ..      96     125 ..      87     136 .. 0.74
   2 !   11.4   0.1   0.00015      0.16      74     109 ..     166     201 ..     141     207 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.014
        RepL 102 anilkkkanGvlvinPdllfkGddkkrlnl 131
                 a+i  kk    + +nPd+l++   +  + l
  CTQ30325.1  96 AEISYKKFRQLIQVNPDILMRLSSQMARRL 125
                 5566677778899********877665554 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00015
        RepL  74 liatnRelaeetgislktvsetlkileeanilkkka 109
                 + +t+ e+ +  g s +tv + lk+le+ n++  + 
  CTQ30325.1 166 IKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHG 201
                 4568889************************97654 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.1   4.4e+03      25      31 ..      24      30 ..      16      33 .. 0.81
   2 ?   -2.9   0.0       6.4   6.7e+03      11      32 ..      71      93 ..      70     102 .. 0.67
   3 !   16.3   0.0   6.4e-06    0.0068      33      55 .]     175     197 ..     168     197 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.1
      HTH_36 25 fpsqetl 31
                +ps++tl
  CTQ30325.1 24 YPSKSTL 30
                8999998 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.4
      HTH_36 11 lgslasfankngg.cfpsqetla 32
                +g+l  f  + +  ++   +t +
  CTQ30325.1 71 IGELGLFEEGQERsAWVRAKTAC 93
                57777787777777887766655 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 6.4e-06
      HTH_36  33 krlglsknTvsraikeLeqlGyi 55 
                 +  g+s++Tv r++k+Le+  +i
  CTQ30325.1 175 QIVGCSRETVGRILKMLEDQNLI 197
                 678***************99887 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.3   3.5e+03      21      30 ..     119     128 ..     104     134 .. 0.73
   2 !   14.3   0.1   2.8e-05     0.029      17      48 ..     167     198 ..     163     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.3
                 HHHHHHHTS- CS
        MarR  21 seLakklgvs 30 
                 s++a++l+v+
  CTQ30325.1 119 SQMARRLQVT 128
                 3777777776 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.8e-05
                 TEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  17 plsvseLakklgvskstvtrvldrLekkGlie 48 
                  ++ +e++  +g+s+ tv r+l+ Le+++li+
  CTQ30325.1 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198
                 56677*************************96 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   2.2e-05     0.023      18      47 ..     168     197 ..     167     198 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.2e-05
      HTH_24  18 isqreLAerlglSpstvnrrlkrLeeeGlI 47 
                 i+ +e+ + +g S+ tv r lk Le++ lI
  CTQ30325.1 168 ITRQEIGQIVGCSRETVGRILKMLEDQNLI 197
                 99*************************998 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.2   5.4e+03      18      29 ..      87      98 ..      84      98 .. 0.78
   2 ?   -2.8   0.0       4.4   4.6e+03      26      37 ..     121     132 ..     119     132 .. 0.78
   3 ?   12.9   0.2   5.4e-05     0.057      22      42 ..     169     189 ..     167     190 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.2
                TTT--HHHHHHH CS
  Sigma70_r4 18 geglTleEIger 29
                ++  T +E++e+
  CTQ30325.1 87 VRAKTACEVAEI 98
                567899999985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.4
                 HHHHHTS-HHHH CS
  Sigma70_r4  26 IgerlgiSrerV 37 
                  ++rl+++ e V
  CTQ30325.1 121 MARRLQVTSEKV 132
                 589999998876 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 5.4e-05
                 -HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4  22 TleEIgerlgiSrerVrqiek 42 
                 T +EIg++ g Sre+V +i+k
  CTQ30325.1 169 TRQEIGQIVGCSRETVGRILK 189
                 679*************99876 PP

>> HTH_7  Helix-turn-helix domain of resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00022      0.23      22      42 ..     168     188 ..     164     190 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00022
                 --STTTSSSS---SSSS--SS CS
       HTH_7  22 isiskIAkevnisRsTvYRyl 42 
                 i++++I  +v++sR+Tv R+l
  CTQ30325.1 168 ITRQEIGQIVGCSRETVGRIL 188
                 899**************9998 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.84   8.9e+02      27      57 ..      99     129 ..      88     132 .. 0.73
   2 ?   10.0   0.0   0.00081      0.85      25      57 ..     165     199 ..     142     202 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.84
                 -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        Rrf2  27 sseeiaerqnispsylekilakLrkaglvks 57 
                 s ++  +  +++p +l ++ +++++   v+s
  CTQ30325.1  99 SYKKFRQLIQVNPDILMRLSSQMARRLQVTS 129
                 5555566778999999999999888777766 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00081
                 -..B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE CS
        Rrf2  25 p..vsseeiaerqnispsylekilakLrkaglvks 57 
                 +  ++ +ei + ++ s++ + +il++L+ ++l+ +
  CTQ30325.1 165 QikITRQEIGQIVGCSRETVGRILKMLEDQNLISA 199
                 2448889*************************976 PP

>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00015      0.16      29      70 ..      91     156 ..      76     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
                 SHHHHHHSHHHHHHHHHTT.....STTHHHHHHHHHHHHHHHH...................S-SS CS
                 xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxx...................xxxx RF
     HhH-GPD  29 tpedladadeekLrelire.....lGfyrrKakyikelArilv...................gkpd 70 
                 t+ ++a+++ +k+r+li+      +++++++a++++ +++++                    ++pd
  CTQ30325.1  91 TACEVAEISYKKFRQLIQVnpdilMRLSSQMARRLQVTSEKVGnlafldvtgriaqtllnlaKQPD 156
                 777899**********9999********************99766666666666666666664444 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.6   8.1e+03      19      28 ..     119     128 ..     118     130 .. 0.77
   2 ?   11.4   0.1   0.00023      0.24      16      43 ..     168     195 ..     165     210 .] 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.6
      HTH_11  19 eeLAeeLnvS 28 
                 +++A++L v+
  CTQ30325.1 119 SQMARRLQVT 128
                 5789999996 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00023
      HTH_11  16 isgeeLAeeLnvSrrtvrrdIkaLeelg 43 
                 i+ +e+ +  ++Sr tv r +k Le++ 
  CTQ30325.1 168 ITRQEIGQIVGCSRETVGRILKMLEDQN 195
                 899*******************999876 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.4   6.8e+03      25      31 ..     120     126 ..     119     128 .. 0.78
   2 ?   10.2   0.0   0.00045      0.47      24      42 ..     171     189 ..     162     189 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.4
      HTH_38  25 eIArrLg 31 
                 ++ArrL 
  CTQ30325.1 120 QMARRLQ 126
                 7899996 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00045
      HTH_38  24 reIArrLgrspsTIsRElk 42 
                  eI++++g+s+ T+ R lk
  CTQ30325.1 171 QEIGQIVGCSRETVGRILK 189
                 59**************997 PP

>> DUF4868  Domain of unknown function (DUF4868)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.6   3.8e+03     127     140 ..      97     112 ..      58     133 .. 0.51
   2 ?   10.9   0.0    0.0003      0.31     147     185 ..     159     198 ..     145     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.6
     DUF4868 127 kikkkgvll..ykqed 140
                 +i+ k++++  + ++d
  CTQ30325.1  97 EISYKKFRQliQVNPD 112
                 2333333334334444 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0003
     DUF4868 147 kvpk.lklnikfeangkIvltekkqvedliklLnDdylkS 185
                 ++p  ++++i+ ++ g+Iv ++ + v  ++k+L+D+ l S
  CTQ30325.1 159 THPDgMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198
                 67888999*****9**********************9988 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00028      0.29      34      94 ..     131     194 ..     108     198 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00028
                 XXXXXXXXXXX.XSXHHHHHHHHHHHH...SXSTTTEEH....HHHHHHSTSXHHHHHHHHHHHHHT CS
       RPA_C  34 alsgnqaklankgltalaqqvlnlikq..speseeGvhv....deiaqklrlsvndvkqavdeLsne 94 
                 ++++    +      + aq++lnl kq  ++ +++G+++    +ei q ++ s ++v ++++ L+++
  CTQ30325.1 131 KVGNLAFLD---VTGRIAQTLLNLAKQpdAMTHPDGMQIkitrQEIGQIVGCSRETVGRILKMLEDQ 194
                 344444444...44899********************993333456666699*******99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      682  (0.0380389); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 1795.89
//
Query:       CTQ30326.1  [L=692]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-66  222.4   3.2    5.9e-66  222.4   3.2    3.0  3  FUSC-like  FUSC-like inner membrane protein yccS
    5.4e-21   75.0  11.7    5.4e-21   75.0  11.7    2.5  2  FUSC_2     Fusaric acid resistance protein-like
    8.2e-10   37.9   8.2    8.2e-10   37.9   8.2    3.1  2  FUSC       Fusaric acid resistance protein family
  ------ inclusion threshold ------
       0.04   13.6   0.0       0.15   11.7   0.0    2.0  1  Dpy-30     Dpy-30 motif


Domain annotation for each model (and alignments):
>> FUSC-like  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.4   3.2   1.3e-69   5.9e-66       2     279 ..      63     330 ..      62     339 .. 0.95
   2 ?   -6.1   6.3         4   1.8e+04       5      67 ..     418     477 ..     415     508 .. 0.67
   3 !    3.5   0.2    0.0068        30     133     189 ..     536     591 ..     531     600 .. 0.68

  Alignments for each domain:
  == domain 1  score: 222.4 bits;  conditional E-value: 1.3e-69
   FUSC-like   2 LavtllcfalaslivqlllpypwlfvlglllstflftmlgalGqryatiafatLlvaiytmlgasqepeiwqqplllllGalwYgllsllwsllfpnrp 100
                 L++  ++fa +sl+vqlll++ ++++++l ++++l+++++ +++ +a++ +a+L++ai+t++ a+ ++ iw+  l++ +G+lwYg+++++w++l++++p
  CTQ30326.1  63 LIIGGCLFAGCSLVVQLLLAQAIPLPFILSGLALLLGVTAEISSLHARLLPASLIAAIFTLSLAG-NMPIWEPLLIYAFGTLWYGVFNWFWFWLWREQP 160
                 89999************************************************************.666****************************** PP

   FUSC-like 101 vqqsLaelfealAdYleaKaslfepdreddleakrlaLaqqnakvvealnaareillsrlkskrgqpetksrrllrlyfvaqDihErassshydYeelr 199
                 +++sL+ l+++lAdY+eaK+sl+  +++ d+ ++ ++L+ +++kvv+ ++++++++++   ++r  ++ k  rllr +++ +D++E++s+s++++ee++
  CTQ30326.1 161 LRESLSLLYRELADYCEAKYSLL--TQHTDPSTALPPLLTRQQKVVDLITQCYQQMHMLAANQR--NDHK--RLLRAFQMGLDLQEHISVSLHQPEEVQ 253
                 ***********************..**********************************44444..6777..*************************** PP

   FUSC-like 200 eafknsdvlfrfqrllelqakaceeiaqaillnkpyqhserleraleeleqslellakq..nnekekellaalrallrnLrt 279
                 + +++s+  ++++++++++a++++ +a++ l    y++ ++ ++ +++  ++le++a+q  +n++++++ +++++++r L+t
  CTQ30326.1 254 KLVERSHAEAVIRWNAQTVAARLRVLADDML----YHRFPK-RFQMDKQIEALEKIARQhpDNPVGHFCAWHFSRIARVLHT 330
                 *******************************....998886.88889888999999999899******************98 PP

  == domain 2  score: -6.1 bits;  conditional E-value: 4
   FUSC-like   5 tllcfalaslivqlllpypwlfvlglllstflftmlgalGqryatiafatLlvaiytmlgasq 67 
                 tl++ ++a l   + +p ++++  +ll+ t+ +++l ++ ++y    ++  + a+yt+  ++ 
  CTQ30326.1 418 TLAGLTIAGLTLHFHVPESYTLSGMLLI-TL-LSYL-IIRKHYGWAMVGFTVTAVYTLQLLTL 477
                 7888888888888888888666554443.33.3333.57788888888888888888766554 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.0068
   FUSC-like 133 akrlaLaqqnakvvealnaareillsrlkskrgqpetksrrllrlyfvaqDihEras 189
                  k +aLa q  +v++a+na++++l +++++    ++  ++ +       q i E++ 
  CTQ30326.1 536 PKAPALAYQRMRVNQAHNALYNSLNQAMQEPG-FNTHYLEDMKLWVTHSQFIVEHIN 591
                 56789*********************987433.333333333333333444556655 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   4.1      0.83   3.7e+03      34      73 ..      58      99 ..      15     148 .. 0.61
   2 !   75.0  11.7   1.2e-24   5.4e-21       2     125 ..     377     498 ..     376     499 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.83
      FUSC_2 34 travqRilGtvlGavlallllyllpgn..lalallvfllvfl 73
                + ++  i+G +l a ++l++  ll +   l+++l ++ l++ 
  CTQ30326.1 58 RFFKRLIIGGCLFAGCSLVVQLLLAQAipLPFILSGLALLLG 99
                444555666666666666666666665246666543333332 PP

  == domain 2  score: 75.0 bits;  conditional E-value: 1.2e-24
      FUSC_2   2 avliaellglwrgeWalitaaivlsptlgasltravqRilGtvlGavlallll.yllpgnlalallvfllvfliafflkrnyalafifltllalllysl 99 
                 a+l +++l+l++++W+l+t+++v +  +ga+  r+v+R +Gt++G+ +a l l + +p+++ l   ++l+++l +++++++y++a++ +t++a+++++l
  CTQ30326.1 377 ASLMGNALHLPKPYWILMTVLFVTQNGYGATRVRIVHRAAGTLAGLTIAGLTLhFHVPESYTLSG-MLLITLLSYLIIRKHYGWAMVGFTVTAVYTLQL 474
                 7889999***************************************9999977366666666655.5555555568899******************** PP

      FUSC_2 100 aagsgnpieialhRlldvliGilial 125
                    + n+ ++++ Rl+d+liG+lia+
  CTQ30326.1 475 L--TLNGEQFIIARLIDTLIGCLIAF 498
                 6..7777889**************97 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -12.0  16.9         4   1.8e+04     526     627 ..     192     308 ..      35     334 .. 0.54
   2 !   37.9   8.2   1.8e-13   8.2e-10       8     247 ..     370     602 ..     363     646 .. 0.80

  Alignments for each domain:
  == domain 1  score: -12.0 bits;  conditional E-value: 4
        FUSC 526 e......aesrfesrmldrlaqllprlaaapparrellrdglaalrlg.ravlrLrralera.......laaearaaldavlaala.frapaaarsarr 609
                 +      +++++   +++  +q+++++a++  ++++llr    +l+l  +  + L++  e +       + a  r   + v a+l+  ++    ++   
  CTQ30326.1 192 AlpplltRQQKVVDLITQCYQQMHMLAANQRNDHKRLLRAFQMGLDLQeHISVSLHQPEEVQklvershAEAVIRWNAQTVAARLRvLADDMLYHRFPK 290
                 033333355566666666666666666666666666666665555554133334443333323344333222233333344444444222222222222 PP

        FUSC 610 lrapaaalraldaalaal 627
                 + + ++ ++al++++++ 
  CTQ30326.1 291 RFQMDKQIEALEKIARQH 308
                 234555555555555444 PP

  == domain 2  score: 37.9 bits;  conditional E-value: 1.8e-13
        FUSC   8 tllAalLALyiAlrleLpqPywAmtTVfiVsqPlsGavlsKslyRllGTllGaaaavllvalfvqapllfllalalWiglclalslldrnfrsYafvLA 106
                   +   +A + + +l Lp+Pyw ++TV++V q   Ga++ + + R++GTl+G++ a l + + v  p+ ++l   l i l+++l  +    + Y++++ 
  CTQ30326.1 370 ISVMLSVASLMGNALHLPKPYWILMTVLFVTQNGYGATRVRIVHRAAGTLAGLTIAGLTLHFHV--PESYTLSGMLLITLLSYLIIR----KHYGWAMV 462
                 55555678888889**************************************987766555544..556666667899******995....78****** PP

        FUSC 107 GYTaalialpavadPetvFdiAvaRvseIvlGIvCaalVsalvfPrsvapalrarlrallrdalalaaaalageegaeareaararlaadilalealrs 205
                 G+T++ +  + + +  +  ++ +aR+ + ++G + a   +  ++P+  +  l++ ++ +l++  ++++ +l+++++a a   +r+r+ +  +al + ++
  CTQ30326.1 463 GFTVTAVYTLQLLT-LNGEQFIIARLIDTLIGCLIAFGGMVWLWPQWQSGLLKKNAHDALEADQQAIRLILSADPKAPALAYQRMRVNQAHNALYNSLN 560
                 ******99888773.333467899********999999999999**************************************************99999 PP

        FUSC 206 qaayesprirararalrrllsrmlallallsslarllarlra 247
                 qa+ e +   +  + ++   ++ + ++  ++++ +l +++  
  CTQ30326.1 561 QAMQEPGFNTHYLEDMKLWVTHSQFIVEHINAMTTLAREHTM 602
                 999987766666666666666666666666665555555544 PP

>> Dpy-30  Dpy-30 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.4e-05      0.15      15      36 ..     298     319 ..     294     321 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHH--SSHHHHHHHH CS
      Dpy-30  15 lqGLtelAkeRPeDPieyLAeY 36 
                 +++L+ +A++ P++P+ +   +
  CTQ30326.1 298 IEALEKIARQHPDNPVGHFCAW 319
                 79**************887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4716.58
//
Query:       CTQ30327.1  [L=406]
Description: bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.2e-139  464.6   0.1   2.7e-139  464.3   0.1    1.0  1  Aminotran_3      Aminotransferase class-III
    0.00052   19.3   0.0    0.00099   18.4   0.0    1.5  1  Aminotran_1_2    Aminotransferase class I and II
     0.0063   15.5   0.1      0.015   14.3   0.1    1.6  1  Aminotran_5      Aminotransferase class-V
     0.0072   15.6   0.0      0.015   14.6   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
       0.19   11.3   0.1        3.6    7.1   0.0    2.0  2  DUF4038          Protein of unknown function (DUF4038)


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  464.3   0.1  7.5e-143  2.7e-139      11     406 .]      26     400 ..      20     400 .. 0.99

  Alignments for each domain:
  == domain 1  score: 464.3 bits;  conditional E-value: 7.5e-143
                  EEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..SEEEEESSHHHHHHHHHHHHH CS
  Aminotran_3  11 lvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgldkvflansGseAvetAlKlar 108
                  ++  k++G++++d++gk+y+D++++iav++lGh+hP++v+a+++q ++l+h+s +++tnepal+l +kl++++    ++v+++nsG+eA+etA+Klar
   CTQ30327.1  26 FIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVAALHQQGETLWHTS-NVFTNEPALRLGRKLVEATFA--ERVVFMNSGTEANETAFKLAR 120
                  66789************************************************.*********************..********************* PP

                  HHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-SCETTTT CS
  Aminotran_3 109 kyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEpiqgegG 206
                  +ya++++++ ktkiiaf++afHGr l+++sv+g+ +ky+++fgp ++++v+++++d                 l+a++++++d+++Av+vEpiqgegG
   CTQ30327.1 121 HYAVTRHSPYKTKIIAFHNAFHGRSLFTVSVGGQ-PKYSDGFGPKPADIVHVPFND-----------------LQAVKAVMDDHTCAVVVEPIQGEGG 200
                  **********************************.********************9.................999999******************* PP

                  SEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HHHHHHHHHH CS
  Aminotran_3 207 vvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnplacavalav 304
                  v++a+p+fl++lrelc++h++ll++DEvq+G+GrTG lfA++h+gv+pD++t+aKal+gG+p+sa+l+t+e+++a++ gshgsT+gGnplacava+a+
   CTQ30327.1 201 VTAATPAFLQGLRELCDQHQALLVFDEVQCGMGRTGSLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTHEIASAFHAGSHGSTYGGNPLACAVANAA 298
                  ************************************************************************************************** PP

                  HHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---TT--HHHHHHHHHHH CS
  Aminotran_3 305 leiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGdnvirllppliitdeeidelleil 402
                  +++i++ ++l+ ++++++ + ++L++l+++ + ++++Rg+Gl+i++elk +++ + +++l +a ++Gv++l+aG++v+r++p+lii +++i+e++ ++
   CTQ30327.1 299 FDLINTPAVLDGVSAKRELFVKHLQRLDAEFDLFSDIRGMGLLIGAELKPQHKGRARDFLYAAADAGVMVLNAGPDVMRFVPSLIIDEQDIAEGMARF 396
                  *****************************************************999****************************************** PP

                  HHHH CS
  Aminotran_3 403 kkal 406
                   +a+
   CTQ30327.1 397 AQAV 400
                  9985 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.7e-07   0.00099     104     307 ..     155     339 ..      73     372 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.7e-07
                    THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT-.-B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS CS
  Aminotran_1_2 104 asyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtG.tvatleeleklldlakkynlllfvDeaYagfvfgsl 198
                    + y++++    + +v +p        +dl+a+++  ++       t+ ++ve ++   G t+at++ l+ l +l++++ +ll++De+  g+  + +
     CTQ30327.1 155 PKYSDGFGPKPADIVHVP-------FNDLQAVKAVMDD------HTCAVVVEPIQGEGGvTAATPAFLQGLRELCDQHQALLVFDEVQCGMGRTGS 237
                    677788888888899999.......89*********99......99*********999955789999*************************9988 PP

                    HTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 199 davatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls.ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLa 293
                     ++  + +v +++      + +Ka+G  G+ v + l + +++s+    s + ++  ++l+ ava+a+ d      ++ +  + + ++r+ ++++L+
     CTQ30327.1 238 LFAYMHYGVTPDIL-----TSAKALG-GGFPVSAMLTTHEIASAFHAGSHGSTYgGNPLACAVANAAFDLI----NTPAVLDGVSAKRELFVKHLQ 323
                    66666888888766.....899***9.58999999999999999999999977766666666666666644....888999999999999999998 PP

                    HS..TEEEECCSCSSE CS
  Aminotran_1_2 294 el..glkvlasqsgmf 307
                    +l  +++ ++   gm 
     CTQ30327.1 324 RLdaEFDLFSDIRGMG 339
                    8876666666666665 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   4.1e-06     0.015      53     179 ..      91     230 ..      53     237 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.1e-06
                  HHHHT-STGGGEEEESSHHHHHHHHHHHCCCC.....-TTTSEEEEETTSHGGGTHHHHHHHHH....HTEEEEEEEBETTSCBEGGGHHHH--TTEE CS
  Aminotran_5  53 aelinaeseeeiiftsGtteainlvalslars.....lkpgdeivvteaehhanlvpwqelakr....tgakvkvipldeegeldldelekllnektk 141
                  ++l++a+ +e+++f+ ++tea++++ + +++         +++i+  ++  h+  +  + +  +     g+  k + + +    dl+++++ +++ t+
   CTQ30327.1  91 RKLVEATFAERVVFMNSGTEANETAFKLARHYavtrhSPYKTKIIAFHNAFHGRSLFTVSVGGQpkysDGFGPKPADIVHVPFNDLQAVKAVMDDHTC 188
                  78999*****************99977655444434467799****************999877111245555666666667788************* PP

                  EEEEESBETTTTEB--....HHHHHHHHHHTT-EEEEE-TTT CS
  Aminotran_5 142 lvaithvsnvtGtiqp....veeigklakkkgalvlvDaaqa 179
                  +v +  ++ + G+       ++ + +l+ +++al++ D +q 
   CTQ30327.1 189 AVVVEPIQGEGGVTAAtpafLQGLRELCDQHQALLVFDEVQC 230
                  ************976511225677889999**********95 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.1e-06     0.015      36     167 ..      88     226 ..      69     229 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.1e-06
                      HHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTT..............TBE-HHHHH CS
  Beta_elim_lyase  36 rLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdetgaiaelagvklrdlknkea..............Gkmdlekle 115
                      rL  ++ e++ +e ++f+ +Gt An+ ++k+    +  + vt+++ + ++    ++++ g  l ++    +                + +++l+
       CTQ30327.1  88 RLGRKLVEATFAERVVFMNSGTEANETAFKLAR--H--YAVTRHSPYKTKIIAFHNAFHGRSLFTVSVGGQpkysdgfgpkpadiVHVPFNDLQ 177
                      55566666677899***************7654..3..33444444444444444444444444444433344444445555555558888887 PP

                      HHS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEE CS
  Beta_elim_lyase 116 aaikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlD 167
                      a +k+v +  + + +++++      g ++ +++ l+ +++++++++  l++D
       CTQ30327.1 178 A-VKAVMD--DHTCAVVVEPIQGEGGVTAATPAFLQGLRELCDQHQALLVFD 226
                      5.455555..688999999988886778999****************99999 PP

>> DUF4038  Protein of unknown function (DUF4038)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.001       3.6     101     179 ..      61     140 ..      50     162 .. 0.78
   2 ?    1.9   0.0     0.039   1.4e+02     255     272 ..     275     292 ..     267     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.001
                 EEEESS-HHHHHTT.....SS-HHHHHHHHHHHHHHHTT-SEEEEEECCC-TT..HHHHHHHHHHHHHH--SS-EEEEE- CS
     DUF4038 101 ialvptwgdkvkegwgpenifnaekakeygkylvaRYkalpiiWllggDrdgee.revwkaiaegikeldpyalitfHpr 179
                 +alv +  ++ ++ w++ n+f++e a ++g+ lv+   a  ++++++g  ++e+  ++ ++ a + ++  ++++i+fH  
  CTQ30327.1  61 PALVAALHQQGETLWHTSNVFTNEPALRLGRKLVEATFAERVVFMNSGTEANETaFKLARHYAVTRHSPYKTKIIAFHNA 140
                 6888888888889999999***************99999999*****988777664455555555444455559999973 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.039
                 HHHCT-SEEEE-BHHHHT CS
     DUF4038 255 avlaGaaGvtYGangiwq 272
                 a+ aG+ G tYG n++  
  CTQ30327.1 275 AFHAGSHGSTYGGNPLAC 292
                 6679*********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2810.74
//
Query:       CTQ30328.1  [L=187]
Description: aminodeoxychorismate synthase, subunit II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-53  181.2   0.0    1.9e-53  181.1   0.0    1.0  1  GATase         Glutamine amidotransferase class-I
    3.1e-10   40.2   0.1    1.8e-09   37.7   0.1    1.8  1  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.1   0.0   2.1e-57   1.9e-53       1     187 [.       3     185 ..       3     187 .] 0.96

  Alignments for each domain:
  == domain 1  score: 181.1 bits;  conditional E-value: 2.1e-57
                 EEEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECE CS
      GATase   1 lliDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikearenkiPiLGICLGmQllaiefgrkvvkekek 98 
                 lliDnyds+t+nl ++++elg++v v+++da  +e++ ++  p++i++s+Gp++p  ++ ++++i+++++ k+P+LG+CLG+Q++a++fg+++v++  +
  CTQ30328.1   3 LLIDNYDSFTWNLYQYFCELGAEVLVRRNDALTLEEI-AALAPEKIVISPGPCTPDeAGISLAVIRHYAG-KTPLLGVCLGHQAIAQAFGATIVRAA-Q 98 
                 58****************************9655554.589*****************************.**************************.9 PP

                 EEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHH CS
      GATase  99 ehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnfl 187
                  +hg+ + ++++++++++gl+n+++++++H+++++p  ++p+++ vta+s+++ e+m+i++++  + gvQFHPEs+++++g++ll+nfl
  CTQ30328.1  99 VMHGKISLIEHNGEGVFQGLNNPLTVTRYHSLVIDP-PTLPSEFNVTARSASG-EIMGIRHREWDLEGVQFHPESILSEQGHQLLANFL 185
                 ***********************************9.99***********998.8********************************97 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.1     2e-13   1.8e-09      95     216 .]      63     170 ..      50     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 2e-13
  Peptidase_C26  95 laLiraalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaike..laeelrve 188
                    la+ir+ ++ ++P+lg+C+G+q ++ a+G t++++++ ++g+              ++ + +++++ l +     v+ +H+  i+   l +e++v+
     CTQ30328.1  63 LAVIRH-YAGKTPLLGVCLGHQAIAQAFGATIVRAAQVMHGK-----------ISLIEHNGEGVFQGLNN--PLTVTRYHSLVIDPptLPSEFNVT 144
                    555554.46689***********************9942222...........33466778889988766..99**********97669******* PP

  Peptidase_C26 189 AvaeDgviEaieseeakafvlgvQwHPE 216
                    A+++ g i  i+++e +  + gvQ+HPE
     CTQ30328.1 145 ARSASGEIMGIRHREWD--LEGVQFHPE 170
                    ******99999999955..9*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1464.04
//
Query:       CTQ30329.1  [L=200]
Description: stationary-phase protein, cell division [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-14   54.5   0.0    2.7e-14   53.8   0.0    1.3  1  Fic       Fic/DOC family


Domain annotation for each model (and alignments):
>> Fic  Fic/DOC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   1.5e-18   2.7e-14       6      96 ..      58     152 ..      55     153 .. 0.93

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 1.5e-18
                 HHHHHHCHS-S------TS--SS-ST..EEEE---SCCCHHHHHHHHHHHHC......HHT-S-HHHHHHHHHHHHHHH--SSS-HHHHHHHHHHHH CS
         Fic   6 dllelhrlllqdigeeagefrdeevsegklesalappeevpaeleelleyln......elekeeplekaaalhyefekiHPFaDGNgRtarlllnll 96 
                 +l+++h++l+qd++++ag++r+++     +++ +++ +++++e + l++ l+       l +++++e++++++ e++ +HPF+ GNg t+r+++++l
  CTQ30329.1  58 YLCAIHHQLYQDLFDWAGRLREVNL--YLGDTPFCHFARIEEEGNALMQALEqedylnGLPRDTFIERLSWFYGEINVLHPFRLGNGLTQRIFFEQL 152
                 79********************887..****************999999999888888889999*****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       284  (0.0158403); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1503.62
//
Query:       CTQ30330.1  [L=55]
Description: hypothetical protein CH1034_350026 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-31  107.1   2.5    3.7e-31  107.0   2.5    1.0  1  DUF2559   Protein of unknown function (DUF2559)


Domain annotation for each model (and alignments):
>> DUF2559  Protein of unknown function (DUF2559)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   2.5   2.1e-35   3.7e-31       1      54 []       2      55 .]       2      55 .] 0.99

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 2.1e-35
                HHHCHHHHHHHHHHHHHHHHHHHHHHTT-------S-HHHHHHHHHHHHHHHXX CS
     DUF2559  1 kkLTdkQksrLweqrrnanFqaSrrLeGlevplvtltaeealaRLeeLRrhYER 54
                ++LTdkQksrLweq+rn+nFqaSrrLeG++vplvtltaeealaRL++LRr+YER
  CTQ30330.1  2 RPLTDKQKSRLWEQTRNTNFQASRRLEGVTVPLVTLTAEEALARLATLRREYER 55
                68***************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 472.56
//
Query:       CTQ30331.1  [L=189]
Description: peptidyl-prolyl cis-trans isomerase A (rotamase A) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-50  169.4   1.0    7.8e-50  169.2   1.0    1.1  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.2   1.0   4.4e-54   7.8e-50       2     158 .]      30     187 ..      29     187 .. 0.92

  Alignments for each domain:
  == domain 1  score: 169.2 bits;  conditional E-value: 4.4e-54
  Pro_isomerase   2 vdietsskGrivieLfadkaPktvenFlklvkegfYdgttFhRvikgfmvqgGdptgktsageqekkggesiraipdEitsklkhkrGalamartg 97 
                    v ++ts +G+i++eL+++kaP+ v+nFlk+v++gfY++ttFhRvi+gfmvqgG ++++++   q  k+++   +i++E ++ l+++rG++amart 
     CTQ30331.1  30 VLLTTS-AGNIELELNSQKAPISVDNFLKYVNSGFYNNTTFHRVIPGFMVQGGGFNEQMQ---Q--KQPN--PPIKNEADNGLRNTRGTIAMART- 116
                    668895.***********************************************988744...2..2232..58*********************. PP

  Pro_isomerase  98 kepnsagsqFfItlkeaphldg.....kytvFGkVveGmdvvekiekvetde.....erpkknvkivsaev 158
                    ++++sa+sqFfI+++++ +ld+     +y+vFGkVv+Gmdv +ki++v+t++     + p+k+v+i sa+v
     CTQ30331.1 117 ADQDSATSQFFINVADNAFLDHgqrdfGYAVFGKVVKGMDVADKISQVQTHNvgpyqNVPTKPVVILSAKV 187
                    69************************************************9999999999999***99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1509.04
//
Query:       CTQ30332.1  [L=395]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-20   73.4  46.7    1.6e-20   73.4  46.7    2.0  2  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.11   12.2   1.6       0.39   10.5   0.0    2.8  2  Phage_holin_2_3  Bacteriophage holin family HP1
       0.76    9.9  10.0        1.6    8.9   1.6    4.2  3  AA_permease_C    C-terminus of AA_permease


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4  46.7   2.6e-24   1.6e-20       2     326 ..      14     320 ..      10     325 .. 0.85
   2 !    8.5  15.0   0.00014      0.82      70     170 ..     277     380 ..     274     393 .. 0.72

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 2.6e-24
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 +++++l+++   ++g+++   +a+ +++ +s+++  +t+  +g ++++++ ++l++ +  +  l +g++l++l+++ l++++sl l+ ++ ++ Gl +g
  CTQ30332.1  14 FFSYALTGALVIVTGMVMG-NIADYFHLPVSSMSNTFTFLNAGILISIFLNAWLMEIVPLKTQLRFGFILMVLAVAGLMLSHSLALFSASMFVLGLVSG 111
                 5667777777777888888.99************************************8899************55555646666************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp 198
                 + +++g  li++++ +++rg  + +  ++fs++ ++ p+++++l+  s+ W +v+  +++v++  fv   l + ++ p  ++k++ e       +p+v 
  CTQ30332.1 112 ITMSIGTFLITHMYEGRQRGARLLFTDSFFSMAGMIFPMVAAVLLaRSIEWYWVYACIGLVYVAIFV---LTFGCDFPVLGKKAQSEN-----SQPVV- 201
                 ******************************************99999******************99...9999**999999999888.....23333. PP

       MFS_1 199 awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                   k+ +   vl+ l +a+l+  +g  g+ +++p y  + lg+s l  ag l++ +++  +i++  ++++++ +    +++l++l++l+++l++++++ +
  CTQ30332.1 202 --KEKWGIGVLF-LSVAALCYILGQLGFISWVPEY-AKSLGMS-LGDAGKLVSDFWMSYMIGMWSFSFILRFFDL--QRILTVLAGLATVLMYLFINGS 293
                 ..4556666665.77777777789999********.*******.9999999999999999999999999987765..6677777777777777777777 PP

       MFS_1 298 .ssavllllvlvliGfglgfvfpsllalas 326
                  ++ ++   +++++Gf+++ +++s+++l s
  CTQ30332.1 294 pEHMPW---FILTLGFFSSAIYTSIITLGS 320
                 355555...456789988888888888766 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00014
       MFS_1  70 llfalg.lllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilai 159
                 +l +l+ +l+ lf+++++  + ++ +  G++++a+++++++l ++ +     ++ + ++ ++  +G++l+ ++ g ++++ g             + a+
  CTQ30332.1 277 VLAGLAtVLMYLFINGSPeHMPWFILTLGFFSSAIYTSIITLGSQQTRV-ASPKLVNFILTCGTIGTMLTFVVTGPIVAASGplaalhtA---NGLYAV 371
                 444555234444669999999***************************9.********************99999999888856664441...333333 PP

       MFS_1 160 vsllafvlfll 170
                 v++++f+l   
  CTQ30332.1 372 VFVMCFIL--G 380
                 33333332..1 PP

>> Phage_holin_2_3  Bacteriophage holin family HP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3      0.48   2.9e+03      27      35 ..      24      32 ..      17      35 .. 0.85
   2 ?   10.5   0.0   6.5e-05      0.39      28      49 ..     108     129 ..      93     134 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.48
  Phage_holin_2_3 27 AiviGIicg 35
                     +iv+G+++g
       CTQ30332.1 24 VIVTGMVMG 32
                     799999998 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 6.5e-05
  Phage_holin_2_3  28 iviGIicgvvTfliNwyykrke 49 
                      +v GI ++++Tfli+  y  ++
       CTQ30332.1 108 LVSGITMSIGTFLITHMYEGRQ 129
                      499**************98877 PP

>> AA_permease_C  C-terminus of AA_permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3      0.28   1.7e+03      27      42 ..       9      24 ..       8      28 .. 0.82
   2 ?    8.9   1.6   0.00026       1.6      11      40 ..      57      86 ..      57      95 .. 0.88
   3 ?    3.2   0.0     0.016        94      12      30 ..     212     230 ..     211     233 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.28
  AA_permease_C 27 ltwirfgvwmliglli 42
                   ltwi f+   l g l+
     CTQ30332.1  9 LTWISFFSYALTGALV 24
                   69**999998888776 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00026
  AA_permease_C 11 alsIlvNiyLmlqLdsltwirfgvwmligl 40
                   ++sI++N +Lm   + +t +rfg  +++  
     CTQ30332.1 57 LISIFLNAWLMEIVPLKTQLRFGFILMVLA 86
                   69********************99888755 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.016
  AA_permease_C  12 lsIlvNiyLmlqLdsltwi 30 
                    ls+++ +y++ qL++ +w+
     CTQ30332.1 212 LSVAALCYILGQLGFISWV 230
                    6888999***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1016  (0.056668); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.37
# Mc/sec: 3242.12
//
Query:       CTQ30333.1  [L=440]
Description: cytosine deaminase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-56  192.3   0.0    2.8e-55  188.7   0.0    2.0  1  Amidohydro_3  Amidohydrolase family
    3.1e-13   49.8   0.0      4e-13   49.4   0.0    1.1  1  Amidohydro_1  Amidohydrolase family
  ------ inclusion threshold ------
       0.14   11.8   0.1       0.25   11.0   0.1    1.3  1  RP-C          Replication protein C N-terminal domain
       0.14   11.5   0.0       0.24   10.7   0.0    1.3  1  TatD_DNase    TatD related DNase


Domain annotation for each model (and alignments):
>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.7   0.0   6.2e-59   2.8e-55       1     472 [.      45     405 ..      45     406 .. 0.97

  Alignments for each domain:
  == domain 1  score: 188.7 bits;  conditional E-value: 6.2e-59
  Amidohydro_3   1 eviDakGrlvlPGFvDsHtHlagggvnlrllrlpdarvtslegvltavrdqagttpkgrwivgeGwdeaqfaeerfpyalaeldevledapvllaal 97 
                   ev +a+G+l +P+F+++H+Hl++++        ++++++++ ++++ ++++a++            ++   +e+   +a++ l++ ++++  +++  
    CTQ30333.1  45 EVLNARGGLAIPPFIEPHIHLDTTQ------TAGEPNWNQSGTLFEGIERWAER------------KALLSHEDVKARAWKTLKWQIANGVQFVR-- 121
                   799*********************9......888889*****************............*****************************.. PP

  Amidohydro_3  98 dtHaavrnsaaldlagiteatpdpaggeilrdangegatgllregafhlvldlaplareaeaaavaaalaalasyGitsveagggnvsslddleplf 194
                    tH++v + ++ +                        ++++l+             ++++ a +v+ +++a+++ Gi s+                 
    CTQ30333.1 122 -THVDVSDPTLTA------------------------LKAMLE-------------VKQEVAPWVELQIVAFPQEGILSY----------------- 163
                   .******999999........................79****.............************************................. PP

  Amidohydro_3 195 eltaeeklplrviikelldaaerlglplspgseeltigavklfadgvlgsrtalltepyftgwpdfedealaelvaaadergldvaihaigdaavd. 290
                                                p+ e+l  +a+kl+ad+v++++++++t++y         e l+  +++a++++ +++ih+++ ++ + 
    CTQ30333.1 164 -----------------------------PNGEALLEEALKLGADVVGAIPHFEFTREYG-------VESLHIAFRLAQQYDRPLDIHCDEIDDEQs 224
                   .............................899*************************877.......666*************************** PP

  Amidohydro_3 291 dvldafeaaaekngnqdrrrlehaegv...tesqiervaalqvaagvqpvfnf.edelldsrlg.perargstpvkellnagvkvalgsDapvgpfd 382
                   +++++++a a k g   r++++h++++   ++++ +r+ +l    g+ +v n+  +++l++r++ ++++rg+t+vkell+ag++v++g+D   ++fd
    CTQ30333.1 225 RFVETVAALALKAGIGPRVTASHTTAMhsyNGAYTSRLFRLLKLSGINFVANPlVNIHLQGRFDdYPKRRGITRVKELLAAGINVCFGHD---DVFD 318
                   ******************************************************************************************...**** PP

  Amidohydro_3 383 pwprigaavmrktrrgg.evlrpdeelsleealalyTrgpAkalgledrkGtLevGadADlvvld....adpldvdppelaearvrltvvdGrvv 472
                   pw+++g+ +m++  ++g +v++ +   ++++ l+l+T ++A+++gled  +++  G +A+l++l      ++++++ p      vr  + +Grv+
    CTQ30333.1 319 PWYPLGTGNMLQVLHMGlHVCQLMGYQQINDGLQLITDNSARTFGLED--YGIVSGNPANLIILPaengFEAVRCQVP------VRWSIRQGRVI 405
                   ************************************************..9**************9988899999999......99999999987 PP

>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   8.9e-17     4e-13       2     317 ..      54     380 ..      53     405 .. 0.75

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 8.9e-17
                   EEE-EEEEEEECETTECSSS...........GHHHHH.....STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH...HHHHHHHHHHTSSSEEEE CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrga...........tledwl.....vppetaaealesgiktalksGtttvadmgattst...giealleaaeelplglri 79 
                    +P +I  H+Hl  +   g+             e w      +++e++++ + + +k  + +G+ +v+ +  + ++   +++a+le   e+      
    CTQ30333.1  54 AIPPFIEPHIHLDTTQTAGEpnwnqsgtlfeGIERWAerkalLSHEDVKARAWKTLKWQIANGVQFVRTHVDVSDPtltALKAMLEVKQEV------ 144
                   5899********8776666677775655554444444***********************************9877777888888877774...... PP

                   EEESSEGGS....GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEETSSCHHHHHHHHHHTTTEEE CS
  Amidohydro_1  80 lggkvsldr....gsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHaletkgevedaeaafgetieh 172
                    +++v l      +++  s  + e+l+++a    ++ + +vv ++   ++  +++ e l+ a+++a ++d p++iH+ e + e++  ++  +     
    CTQ30333.1 145 -APWVELQIvafpQEGILSYPNGEALLEEA----LKLGADVVGAIPHFEFTREYGVESLHIAFRLAQQYDRPLDIHCDEIDDEQSRFVETVA----A 232
                   .33333333444445555566666666665....5556678889999999999************************999999755555555....3 PP

                   ETTTTSTCCHHTTTHCCEEEHCTCEEE.....HHHHHHHHHHHHHHCEE...........HHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECT.... CS
  Amidohydro_1 173 gthlevaeslglldeiklilahgvhlt.....pteaellkerlkeagva...........hcpfsnsilrsgrealrkaldeGvkvglgtDga.... 249
                     +  +      +++ ++++ h + ++          +l + lk +g++           + +f++   r g+ +++++l +G++v +g D++    
    CTQ30333.1 233 LALKAG------IGP-RVTASHTTAMHsyngaY--TSRLFRLLKLSGINfvanplvnihlQGRFDDYPKRRGITRVKELLAAGINVCFGHDDVfdpw 320
                   234444......345.88888888888766433..468899999999997777766666655666666***********************999999 PP

                   ...TSSCCGGHHHHHHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEE CS
  Amidohydro_1 250 ...asgnslnlleelrlalklqrgllyedeegglslkealrmaTingAkalglddkvGsievGkdADlvvv 317
                      + gn l++l  + + +         + +g   +++ l++ T n A+ +gl+ + G i  G +A+l+++
    CTQ30333.1 321 yplGTGNMLQVLHMGLHVC---------QLMGYQQINDGLQLITDNSARTFGLE-DYG-IVSGNPANLIIL 380
                   8877777776644455555.........33677899*****************6.***.999********9 PP

>> RP-C  Replication protein C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   5.6e-05      0.25      23      74 ..     105     158 ..      88     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.6e-05
        RP-C  23 g..vdkwqllralkeakaalgvsdralavLdaLlsftpeddlseearlivfpsN 74 
                 +  + kwq+++ ++  ++++ vsd +l+ L+a+l++ +e +   e +++ fp  
  CTQ30333.1 105 AwkTLKWQIANGVQFVRTHVDVSDPTLTALKAMLEVKQEVAPWVELQIVAFPQE 158
                 23489**********************************998888889998876 PP

>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.4e-05      0.24     112     162 ..     197     259 ..     177     273 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.4e-05
                 HHHHHHHHHHHTTEEEEEEEES-HH...HHHHHHHHCG.GCCS........EEEETT--S-HH CS
  TatD_DNase 112 vFeeqlrlAkelklplviHlrkaee...dlleilkeaa.eaka........kvvlHsfsgsae 162
                  +   +rlA+++++pl iH+ + ++    ++e + ++a +a++        +  +Hs++g ++
  CTQ30333.1 197 SLHIAFRLAQQYDRPLDIHCDEIDDeqsRFVETVAALAlKAGIgprvtashTTAMHSYNGAYT 259
                 556678****************55533433333333332222233447777999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3245.36
//
Query:       CTQ30334.1  [L=847]
Description: nitrite reductase, large subunit, nucleotide-and Fe/S-cluster binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-53  180.2   0.3    9.7e-53  179.3   0.3    1.4  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    5.7e-21   74.6   3.2    1.2e-14   54.3   2.9    2.7  2  Fer2_BFD       BFD-like [2Fe-2S] binding domain
    3.6e-17   62.7   0.7    3.6e-17   62.7   0.7    3.6  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    5.2e-16   58.6   0.2    1.6e-15   57.0   0.0    1.9  2  NIR_SIR        Nitrite and sulphite reductase 4Fe-4S domain
    7.5e-11   41.7   0.0    1.9e-10   40.4   0.0    1.7  1  NIR_SIR_ferr   Nitrite/Sulfite reductase ferredoxin-like half
    1.6e-10   40.8   0.0    2.2e-10   40.3   0.0    1.2  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      5e-10   39.2   0.1    1.4e-09   37.7   0.1    1.8  1  Rubredoxin_C   Rubredoxin NAD+ reductase C-terminal domain
     0.0021   17.2   0.2      0.027   13.5   0.2    2.1  2  GIDA           Glucose inhibited division protein A
     0.0025   17.8   4.5          1    9.4   0.0    3.8  4  NAD_binding_9  FAD-NAD(P)-binding
     0.0038   16.6   0.9     0.0071   15.7   0.2    1.7  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.015   14.0   2.1        3.9    6.1   0.1    3.1  3  HI0933_like    HI0933-like protein
      0.035   13.3   0.0       0.43    9.7   0.0    2.4  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
      0.037   14.5   0.1         11    6.5   0.0    2.8  2  NAD_binding_7  Putative NAD(P)-binding
      0.039   13.0   2.7        2.2    7.3   0.0    2.4  2  FAD_binding_2  FAD binding domain
       0.12   12.6   0.1       0.65   10.3   0.2    2.2  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
       0.17   11.1   2.7       0.18   11.0   1.4    1.5  1  FAD_binding_3  FAD binding domain
       0.84    9.5   4.7       0.93    9.4   0.5    2.7  3  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
        3.5    7.1   5.7         39    3.7   0.0    3.5  4  DAO            FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.3   0.3   9.7e-56   9.7e-53       2     279 ..       5     292 ..       4     306 .. 0.89

  Alignments for each domain:
  == domain 1  score: 179.3 bits;  conditional E-value: 9.7e-56
                  SEEEE--SHHHHHHHHHHHH....HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH......HHHHCHHHHCCCCHCCTCEEEEESCEEEEETE CS
                  xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq....agakvtlvelegtclnggcllskallgvaedaeias......evvkklnqgielllgeevvkidpgkkkvklek 89 
                  ++++iG G+ G+++ ++l       ++++t++ +e  + ++++ ls+ + +  +++  +       ++      g+++l ge +++i +++k ++   
   CTQ30334.1   5 RIAIIGNGMVGHRFIEELLDkapaGQFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVregfyeKH------GVKVLVGERAITINRQEKVIHS-- 94 
                  799***************9987766*******999**********88776655544333347766554......9******99****999977777.. PP

                  EECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T.SEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS.TTS-HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  Pyr_redox_2  90 kkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp.krivvvGgGyiGvElAaalaklgkevtlveardrll.raldkel 185
                     + ++++ ydkl++AtGs p +++i+G++++ +++ rt+++ +a+++  ++ kr +vvGgG+ G+E A+al++lg+e++++e ++ l+ ++ld++ 
   CTQ30334.1  95 ---SAGRTVFYDKLIMATGSYPWIPPIKGAETQDCFVYRTIEDLNAIESCARRsKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMaEQLDQMG 189
                  ...6789******************************************99998999***************************************** PP

                  HHHHHHHHHHTTEEEEESCEEEEEEETTEEEE..EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBESSTTEEE-GGGC... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx... RF
  Pyr_redox_2 186 saaleealekeGvevklgtsvkeidgngekle..vvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflrtnvpgiyaiGDva... 278
                  +++l++++e +Gv+v++ ++ kei ++g++++  ++  dg+e+++d +v+++G+rp+++l+  + gl++ +rggi v+++++t++p+iyaiG +a   
   CTQ30334.1 190 GEQLRRKIESMGVKVHTSKNTKEIVQQGTEARktMHFADGSELQVDFIVFSTGIRPRDKLA-TQCGLAVAQRGGIMVNDSCQTSDPDIYAIGECAswn 286
                  *****************************44456***************************.*********************************765 PP

                  .....T CS
                  .....x RF
  Pyr_redox_2 279 .....g 279
                        
   CTQ30334.1 287 nrvygL 292
                  544442 PP

>> Fer2_BFD  BFD-like [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   2.9   1.2e-17   1.2e-14       2      50 ..     424     471 ..     423     472 .. 0.96
   2 !   18.0   0.0   2.8e-06    0.0028       3      50 ..     486     533 ..     485     534 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1.2e-17
    Fer2_BFD   2 VCrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiLa 50 
                 +C+C++v++g++++ai ++g +tv+++k++tkagtgCggC+p + ++L+
  CTQ30334.1 424 ICSCFDVSKGDLIAAI-NKGCHTVAALKAETKAGTGCGGCIPLVTQVLN 471
                 9***************.889**************************996 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 2.8e-06
    Fer2_BFD   3 CrCegvtegeIrdairraglttveevkrrtkagtgCggCrpaieeiLa 50 
                 C+ ++ +++e+ + ir +g++t++e+ ++ + g gC  C+p +  +La
  CTQ30334.1 486 CEHFAYSRQELFHLIRVEGIKTFDELLEKHGQGYGCEVCKPTVGSLLA 533
                 5557899********8899*************************9998 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.4      0.34   3.4e+02       2      35 ..       6      43 ..       5      95 .. 0.50
   2 !   62.7   0.7   3.6e-20   3.6e-17       2      75 ..     148     223 ..     147     229 .. 0.92
   3 ?   -2.3   0.0       7.1   7.1e+03      44      58 ..     468     482 ..     465     484 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.34
                EEEECSSHHHHHHHHHHHHTT....SEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelg....kkVtvversdkll 35
                ++++G G +g  + ++l + +     ++tv+  ++++ 
  CTQ30334.1  6 IAIIGNGMVGHRFIEELLDKApagqFDITVFCEEPRIA 43
                67777777777777777444332222444444444443 PP

  == domain 2  score: 62.7 bits;  conditional E-value: 3.6e-20
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.TTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll.rllDeeaskilqeklekngievllntkveeiegsedg.ves 75 
                  +vvGgG++glE+Agal++lg +++v+e +++l+  +lD++ ++ l++k+e +g++v+++++++ei++++ +  ++
  CTQ30334.1 148 GAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMaEQLDQMGGEQLRRKIESMGVKVHTSKNTKEIVQQGTEaRKT 223
                 68*****************************************************************998875555 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 7.1
                 HHHHHHHHHTTEEEE CS
   Pyr_redox  44 kilqeklekngievl 58 
                 ++l  +l k+giev 
  CTQ30334.1 468 QVLNAELAKQGIEVN 482
                 6788999*****996 PP

>> NIR_SIR  Nitrite and sulphite reductase 4Fe-4S domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.5   2.5e+03     136     153 ..     182     199 ..     181     203 .. 0.81
   2 !   57.0   0.0   1.6e-18   1.6e-15       3     149 ..     633     766 ..     631     775 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
     NIR_SIR 136 kylverlGvekFrekvee 153
                 ++ ++++G e++r+k+e+
  CTQ30334.1 182 AEQLDQMGGEQLRRKIES 199
                 567899*********974 PP

  == domain 2  score: 57.0 bits;  conditional E-value: 1.6e-18
                 SSCCCCCCSTCCCTBSS-SS-THHHHHHHHHHHCTCCCCTSSSS-BEEEEESSTCSTSSGGGSSEEEEEEEETTCEEEEEEEE--B-SSSTC-TCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     NIR_SIR   3 anlrnvtlcpgaglceeallDttelakaiedelepeygetylPrKfKiavsgcpnncvaveanDiglvgvkkdekeigfnilvGGglgrthgakktsar 101
                 + lr  ++c+g+++c+  + D+  +  ++e    ++y+  + P+K+K+ vsgc + c++++ +Dig+++++k     g+n++v G+ g +++ +  +a 
  CTQ30334.1 633 KALRMAKTCVGSTWCRYGVGDSVGFGVELE----NRYKGIRTPHKMKFGVSGCTRECAEAQGKDIGIIATEK-----GWNLYVCGNGGMKPRHADLLA- 721
                 678999***********************9....99999*********************************.....*********************. PP

                 EEEEEGGGHHHHHHHHHHHHHHHS-CSSGGG-SHHHHHHHH..HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
     NIR_SIR 102 lgfvpeeevlevveaivevyrdhgdrknrkkeRlkylverl..GvekFre 149
                  + ++ + ++++++  + +y     r++ k  R + +++++  G++ +r+
  CTQ30334.1 722 -ADLDRDTLIKYLDRFMMFYI----RTADKLTRTAPWLDNMegGIDYLRS 766
                 .7999999*************....**************98555655555 PP

>> NIR_SIR_ferr  Nitrite/Sulfite reductase ferredoxin-like half domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   1.9e-13   1.9e-10       3      68 ..     560     622 ..     558     623 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.9e-13
  NIR_SIR_ferr   3 qkdgkgyymvrlrvpnGritaeqlraladiaekygsgeirlTtrQnlqlhgvpeedleeileeLae 68 
                   qkdg+  y+v  r  +G it+e l a+ +ia+++   + ++T  Q + l+g +++dl+ei++ L e
    CTQ30334.1 560 QKDGT--YSVIPRSAGGEITPEGLVAVGRIAREFN-LYTKITGSQRIGLFGAQKDDLPEIWRQLIE 622
                   89987..8***************************.**************************9987 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   2.2e-13   2.2e-10     107     305 .]      83     280 ..      40     280 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 2.2e-13
  Pyr_redox_3 107 vkkedegfevetske.tyeAkkviiAtGefdkPnklnipGeek.lvkhyskvkefhkya.....gqkvvViGgknSavDaAlelvrkgaeVtvvtrgs 197
                  ++ ++++ ++++s + t+  +k+i+AtG   +P  + i+G+e   + +y+++++++ ++      ++ +V+Gg+  + +aA  l + g e +v+    
   CTQ30334.1  83 ITINRQEKVIHSSAGrTVFYDKLIMATGS--YPWIPPIKGAETqDCFVYRTIEDLNAIEscarrSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP 178
                  344445567777776689999*******9..6*********964899*****9988775333337899***************************999 PP

  Pyr_redox_3 198 eiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeey..kvktedgkkvevkddvvlatGykpdlsflkkslfeldedgrpvlteet 293
                   + +e      +l  +  ++l++ +++  +kv++ +++kei ++ +e   +++++dg++++v d++v+ tG +p  ++ ++++++ ++ g ++++++ 
   CTQ30334.1 179 MLMAE------QLDQMGGEQLRRKIESMGVKVHTSKNTKEIVQQGTEArkTMHFADGSELQV-DFIVFSTGIRPRDKLATQCGLAVAQRGGIMVNDS- 268
                  77776......588889999999999866************998877644788****99998.788999*****************99999999876. PP

  Pyr_redox_3 294 eetnvpglflaG 305
                  ++t  p+++ +G
   CTQ30334.1 269 CQTSDPDIYAIG 280
                  667799999998 PP

>> Rubredoxin_C  Rubredoxin NAD+ reductase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.1   1.4e-12   1.4e-09       3      67 ..     321     388 ..     320     391 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.4e-12
                   -EEEETTEEEEEES--TT---.SEEEEEE-SS-..EEEEEEE..TTEEEEEEEES-HHHHHHHHHHHH CS
  Rubredoxin_C   3 tiLkvsgidlfSvGdieeeek.aeelveedkekgkYkklfik..ngklvGAiliGDtkesaklkklie 67 
                    +Lk +g+d+  +Gd  +    a+++v+ d++k+ Yk+l++   n+ l GA+l+GDt+++  l++l+ 
    CTQ30334.1 321 AKLKLLGVDVGGIGDAHGRTPgARSYVYLDESKEVYKRLIVSadNKTLLGAVLVGDTSDYGNLLQLVL 388
                   68****************9999*******************633778*************99999875 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.16   1.6e+02     125     151 ..      80     112 ..      37     125 .. 0.69
   2 !   13.5   0.2   2.8e-05     0.027       4      36 ..     150     189 ..     148     243 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.16
                 T......TEEEEEEETTS-EEEECEEEE--TT- CS
        GIDA 125 e......kkvkgvvtedgetikakavviatGtf 151
                 e      ++ k++  + g+t+  ++ ++atG++
  CTQ30334.1  80 EraitinRQEKVIHSSAGRTVFYDKLIMATGSY 112
                 13333337778899999**************97 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.8e-05
                 EE-SSHHHHHHHHHHHHTT--EEEE.......ES-GGGTT CS
        GIDA   4 ViGgGhAGceAAlaaarlGakvlLi.......thkldtia 36 
                 V+GgG+ G+eAA a+++lG+++  i       +++ld+++
  CTQ30334.1 150 VVGGGLLGLEAAGALKNLGVETHVIefapmlmAEQLDQMG 189
                 9**********************99777777766666655 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0     0.001         1       1      32 [.       7      39 ..       7      57 .. 0.84
   2 ?    3.8   0.0     0.053        52     105     154 ..      62     110 ..      39     112 .. 0.63
   3 ?   -1.8   0.2       2.7   2.7e+03       1      17 [.     149     165 ..     149     182 .. 0.81
   4 ?    4.8   0.0     0.026        26     111     154 ..     197     242 ..     182     244 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.001
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlf..d 32
                   ai+G G+ G  ++e+Ll++a ++ +++it+f  +
     CTQ30334.1  7 AIIGNGMVGHRFIEELLDKA-PAGQFDITVFceE 39
                   8******************8.9********9533 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.053
  NAD_binding_9 105 eellarlpegvtvevh.raevvdleeradgqavlladgaslaadaVvLAlG 154
                    + + + + e+  v+v+  ++++ ++++++   ++ + g+++ +d++++A+G
     CTQ30334.1  62 SLVREGFYEKHGVKVLvGERAITINRQEK--VIHSSAGRTVFYDKLIMATG 110
                    33333444455666642567777776654..6999***************9 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.7
  NAD_binding_9   1 aivGaGprGlavlerLl 17 
                    a+vG+G  Gl ++ +L 
     CTQ30334.1 149 AVVGGGLLGLEAAGALK 165
                    89*******99988775 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.026
  NAD_binding_9 111 lpegvtvevhra.evvdleeradgq..avlladgaslaadaVvLAlG 154
                      e++ v+vh++ +  ++ ++++++  +++ adg++l++d +v  +G
     CTQ30334.1 197 I-ESMGVKVHTSkNTKEIVQQGTEArkTMHFADGSELQVDFIVFSTG 242
                    3.34567777552444566665553248999*************999 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.6   2.5e+03      30      42 ..       5      17 ..       2      21 .. 0.82
   2 !   15.7   0.2   7.2e-06    0.0071      32      78 ..     149     203 ..     141     228 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.6
                 EEEEESTSHHHHH CS
  AlaDh_PNT_C 30 kvlviGgGvaGlq 42
                 ++ +iG G++G  
   CTQ30334.1  5 RIAIIGNGMVGHR 17
                 799********75 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 7.2e-06
                  EEESTSHHHHHHHHHHHHTT-EEEEEESSHHH.HHHHHHTTTCECEE.......H CS
  AlaDh_PNT_C  32 lviGgGvaGlqAiatakglgakVtvlDvrpar.leqleslgakfvev.......l 78 
                   v+GgG  Gl+A+ + k+lg ++ v++  p   +eql+++g++ ++        +
   CTQ30334.1 149 AVVGGGLLGLEAAGALKNLGVETHVIEFAPMLmAEQLDQMGGEQLRRkiesmgvK 203
                  69**************************998526899999999877666666663 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.013        13      81     167 ..      32     114 ..      13     127 .. 0.82
   2 ?    0.9   0.6      0.15   1.5e+02       4      32 ..     149     177 ..     146     190 .. 0.90
   3 ?    6.1   0.1     0.004       3.9     115     187 ..     193     265 ..     182     270 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.013
                  HHHHHHHHTT--EEE-STTEEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS- CS
  HI0933_like  81 dlialveelgvelkeedsgrlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSi 167
                  d+  ++ee ++++   +    F  + +ae++  + +   ++ gvk+ + ++  +++++e     ++ + ++++  dkl++AtG+  +
   CTQ30334.1  32 DITVFCEEPRIAYDRVHLSSYFSHH-TAEELSLVREGFYEKHGVKVLVGERAITINRQE---KVIHSSAGRTVFYDKLIMATGSYPW 114
                  6777888888888888888888888.999998888888999*********999995533...34666689*************8655 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.15
                  EEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like   4 iviGgGaAGlmaAisaakrgkrVllleka 32 
                  +v+GgG  Gl aA ++++ g ++ ++e a
   CTQ30334.1 149 AVVGGGLLGLEAAGALKNLGVETHVIEFA 177
                  79************************966 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.004
                  HHHHHHHHT-EEE-S--EEEEECE.TTE.EEEEE.TTEEEEESEEEE----SS-GGGT--SHHHHHHHHTT--E CS
  HI0933_like 115 llkelkeagvklrletevksveke.edgkfrvktkseeeleadklvlAtGGlSiPklGstgkgyklaeqfghti 187
                  l +++++ gvk++++++ k++ ++ ++ + +++  +++el+ d +v++tG     kl +t+ g  +a+  g+ +
   CTQ30334.1 193 LRRKIESMGVKVHTSKNTKEIVQQgTEARKTMHFADGSELQVDFIVFSTGIRPRDKL-ATQCGLAVAQRGGIMV 265
                  8899****************955515556777779***************8877777.6777777777777665 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.3     3e+02     191     225 ..       3      39 ..       1      59 [. 0.80
   2 ?    9.7   0.0   0.00043      0.43     142     211 ..      95     165 ..      75     224 .. 0.79
   3 ?   -1.7   0.0       1.2   1.2e+03     296     341 ..     203     244 ..     179     245 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.3
  K_oxygenase 191 kkriaVvGsGqSaaeifedllrrqkk..velklvtrs 225
                  k ria++G G  +   +e+ll+++++   +++++  +
   CTQ30334.1   3 KVRIAIIGNGMVGHRFIEELLDKAPAgqFDITVFCEE 39 
                  679********************88633566655555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00043
  K_oxygenase 142 geeeelearnlvlgvGtepkiPevleklegkervvHsseylerkee.llakkriaVvGsGqSaaeifedll 211
                     +++   +l++++G+ p iP++  + +++  v+ + e l+ +e+  +++kr aVvG+G  + e +  l 
   CTQ30334.1  95 SAGRTVFYDKLIMATGSYPWIPPIKGAETQDCFVYRTIEDLNAIEScARRSKRGAVVGGGLLGLEAAGALK 165
                  4567788899*************98876643334445566777766789999********98888776665 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.2
  K_oxygenase 296 rllpnrevesaeaegkg.eveltlrneesgeeetlevdavvlATGYr 341
                  ++ ++++ +++ ++g++ + ++++      + ++l+vd +v++TG r
   CTQ30334.1 203 KVHTSKNTKEIVQQGTEaRKTMHF-----ADGSELQVDFIVFSTGIR 244
                  444455555555555321222222.....246889999****99976 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.011        11       7      40 ..       3      40 ..       1     105 [. 0.74
   2 ?    5.1   0.0     0.032        31       7      93 ..     145     228 ..     141     273 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.011
  NAD_binding_7  7 gkkvlvvGgGevAarkvrklleag....akvtvvapev 40
                   + ++ ++G G v+ r ++ ll++      ++tv  +e 
     CTQ30334.1  3 KVRIAIIGNGMVGHRFIEELLDKApagqFDITVFCEEP 40
                   56899****************96443356899988884 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.032
  NAD_binding_7   7 gkkvlvvGgGevAarkvrklleagakvtvvapevkeeleelvklaeeelekdlegadlviaatddrelneriaeaakarrilvnvad 93 
                     k+  vvGgG ++++ +  l + g + +v+  +    +e+l ++  e+l++++e + + + +    +  ++i+++  ++r+ +  ad
     CTQ30334.1 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVKVHTS---KNTKEIVQQGTEARKTMHFAD 228
                    67889*******************999997555434555555566666666666555444433...344455555555555555555 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.3     0.014        14       4      29 ..     150     175 ..     148     181 .. 0.93
   2 ?    7.3   0.0    0.0022       2.2     372     404 ..     259     285 ..     213     294 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.014
                    EE--SHHHHHHHHHHHHTTT-EEEEE CS
  FAD_binding_2   4 ViGsGlAGLaAAleaaeaGlkvavve 29 
                    V+G+Gl GL AA ++++ G ++ v+e
     CTQ30334.1 150 VVGGGLLGLEAAGALKNLGVETHVIE 175
                    9***********************98 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0022
                    ES-EEEBETTSBESTTEEESSBTEEE-STCEES CS
  FAD_binding_2 372 tmgGvetdengrvldadgqpipGLYAaGevaag 404
                    + gG+ +++++++        p+ YA+Ge+a++
     CTQ30334.1 259 QRGGIMVNDSCQT------SDPDIYAIGECASW 285
                    679**********......99**********65 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       7.4   7.3e+03       1      25 [.       8      36 ..       8      42 .. 0.71
   2 ?   10.3   0.2   0.00065      0.65       1      26 [.     150     175 ..     150     180 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7.4
                   EE--SHHHHHHHHHH.HCC...TEEEEEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylL.aka...gfdvlll 25
                   I+G G+ G  +  +L  ka   +fd++++
     CTQ30334.1  8 IIGNGMVGHRFIEELlDKApagQFDITVF 36
                   88999999888866514446678899988 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00065
                    EE--SHHHHHHHHHHHCCTEEEEEE- CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvllle 26 
                    +vG+Gl Gl aA +L++ g++ +++e
     CTQ30334.1 150 VVGGGLLGLEAAGALKNLGVETHVIE 175
                    8***********************99 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.4   0.00018      0.18       5      31 ..     149     175 ..     147     179 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
                    EEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlve 31 
                    ++VG+G+ Gl +a  L++ Gv+++++e
     CTQ30334.1 149 AVVGGGLLGLEAAGALKNLGVETHVIE 175
                    59************************8 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.65   6.4e+02       2      15 ..       6      19 ..       5      26 .. 0.82
   2 ?   -1.5   0.0       1.9   1.9e+03      74     113 ..      56      95 ..      19     100 .. 0.78
   3 ?    9.4   0.5   0.00093      0.93       3      69 ..     149     216 ..     148     237 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.65
                EEEE--SCCHHHHH CS
     3HCDH_N  2 vaviGaGtmGagia 15
                +a+iG G++G+   
  CTQ30334.1  6 IAIIGNGMVGHRFI 19
                8*********9865 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.9
                 HHHHC-SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE- CS
     3HCDH_N  74 eeavdadlviEavvEnlelKrkvfaelekiakpdailasn 113
                 ++a +  lv E   E+  +K  v ++  +i +++ ++ s+
  CTQ30334.1  56 HTAEELSLVREGFYEKHGVKVLVGERAITINRQEKVIHSS 95 
                 34448999************99999999999999999886 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00093
                 EEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHH.HHHCCTTTTSS-HHHHCCCHHCEEE CS
     3HCDH_N   3 aviGaGtmGagiaavfasagleVvlvdiseealekalekiek.sleklvekgklkeeeveaalarisf 69 
                 av+G G++G + a ++ + g+e+++++ ++  +++ l+++   +l++ +e+  +k ++ +++ + ++ 
  CTQ30334.1 149 AVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGeQLRRKIESMGVKVHTSKNTKEIVQQ 216
                 8***************************9988888887776547777777777774444444444433 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.6   2.6e+03       2      31 ..       6      41 ..       5      70 .. 0.74
   2 ?    3.7   0.0     0.039        39     157     203 ..      70     112 ..      61     133 .. 0.74
   3 ?   -0.1   0.8      0.54   5.4e+02       3      27 ..     149     175 ..     148     180 .. 0.83
   4 ?    2.9   0.0     0.068        68     152     207 ..     193     249 ..     190     296 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.6
                EEEECTSHHHHHHHHHHH.HTT.....EEEEESSSS CS
         DAO  2 vviiGGGiiGlstAyeLa.rrg.....Vtllekgdi 31
                ++iiG G++G     eL  +++     +t+++ +++
  CTQ30334.1  6 IAIIGNGMVGHRFIEELLdKAPagqfdITVFCEEPR 41
                89*******977777765233233666666666655 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.039
                 HHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEEEEEEEEE--GGG CS
         DAO 157 ealGveilegtevtgleeedgkvwgverttp.gendaadavVnaaGaw 203
                 e++Gv++l g+++  ++++     +v  +++ g+++ +d++++a+G +
  CTQ30334.1  70 EKHGVKVLVGERAITINRQ----EKV-IHSSaGRTVFYDKLIMATGSY 112
                 799*************664....333.24444888667********66 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.54
                 EEECTSHHHHHHHHHHHHTT..EEEEE CS
         DAO   3 viiGGGiiGlstAyeLarrg..Vtlle 27 
                 +++GGG  Gl +A +L   g  + ++e
  CTQ30334.1 149 AVVGGGLLGLEAAGALKNLGveTHVIE 175
                 79**********999965577777776 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.068
                 HHHHHHHTT-EEEESECEEEEEEEE...TCEEEEEEECTEEEEEEEEEEE--GGGHH.HH CS
         DAO 152 laraaealGveilegtevtgleeed...gkvwgverttpgendaadavVnaaGawsd.ll 207
                 l+r++e+ Gv++++  + +++ +++      ++  + ++g++ ++d +V ++G+  + +l
  CTQ30334.1 193 LRRKIESMGVKVHTSKNTKEIVQQGteaR--KTM-HFADGSELQVDFIVFSTGIRPRdKL 249
                 8999***********99999966533222..222.222255535699******8866544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 5687.65
//
Query:       CTQ30335.1  [L=108]
Description: nitrite reductase, NAD(P)H-binding, small subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-39  132.0   0.0    7.6e-39  131.8   0.0    1.0  1  Rieske_2  Rieske-like [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> Rieske_2  Rieske-like [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.8   0.0   4.2e-43   7.6e-39       1     103 [.       3     106 ..       3     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 131.8 bits;  conditional E-value: 4.2e-43
                 SEEEEEECCCS-TTB-EEEEETTEEEEEEE-.TTS-EEEEESS-TTTSSSTCCCSEEEECTTCEEEE-TTT--EEETTT-BBSS-TTSB-BEE-EEEST CS
    Rieske_2   1 ewvpvckledlvketgvaalvdgkqvalfrl.ekeevyAidnldpaseanvlsrGlvgdkkgelvvasPlykqkfdLktGecledeevslkvypvrved 98 
                 +wv++c+++d+ + tgv+al++++qva+fr  ++++v+Ai+n+dp+ +a+vlsrG++++++g l+vasPl+kq+f+L++G c+ed+++s++ +++rv+d
  CTQ30335.1   3 QWVNICSIDDILPATGVCALLGQQQVAIFRPyHDDRVFAISNIDPFFNASVLSRGIIAEHDGALWVASPLKKQRFRLSDGLCMEDASHSIARFDARVKD 101
                 7******************************8999**************************************************************** PP

                 SEEEE CS
    Rieske_2  99 gkvev 103
                 g+v++
  CTQ30335.1 102 GHVQL 106
                 ***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 851.10
//
Query:       CTQ30336.1  [L=457]
Description: fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase; uroporphyrinogen methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-48  165.7   0.1    2.1e-48  165.1   0.1    1.3  1  TP_methylase    Tetrapyrrole (Corrin/Porphyrin) Methylases
    1.1e-27   96.4   0.2    4.2e-26   91.4   0.0    2.3  2  NAD_binding_7   Putative NAD(P)-binding
    6.6e-18   64.2   4.6    6.6e-18   64.2   4.6    2.0  2  CysG_dimeriser  Sirohaem synthase dimerisation region
    4.4e-09   35.6   0.8    9.1e-09   34.6   0.2    1.9  2  Sirohm_synth_M  Sirohaem biosynthesis protein central
  ------ inclusion threshold ------
      0.021   15.2   0.0       0.24   11.8   0.0    2.5  3  Radical_SAM     Radical SAM superfamily
      0.081   13.0   0.0        6.2    6.9   0.0    2.6  2  Shikimate_DH    Shikimate / quinate 5-dehydrogenase
        0.1   11.8   0.0        5.1    6.2   0.1    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.1   0.1   8.2e-52   2.1e-48       2     212 ..     218     426 ..     217     427 .. 0.92

  Alignments for each domain:
  == domain 1  score: 165.1 bits;  conditional E-value: 8.2e-52
  TP_methylase   2 lylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeeleleapmgkekepleea.......yeeiaealaealragkdVvllvsGDPl 91 
                   ++lVG+GpGd+ llT+++l+ +++advv++d+ ++++ + +l+++++  ++    +      +       +eei+++l +++++g++Vv+l++GDP+
    CTQ30336.1 218 VVLVGAGPGDAGLLTLKGLQQIQQADVVVYDR-LVSDDIMNLVRRDADRVF--VGK------RsgyhcvpQEEINQILLREAQKGRRVVRLKGGDPF 305
                   79******************************.*********998642222..222......12233446*************************** PP

  TP_methylase  92 vygtgselvealrareagieveviPGvsslqaaaarlgiplteggevlsvl..lpglakeeereleallangdtlvllkaprklaelaelLkea.ly 185
                   ++g+g+e++e l++  agi++ v+PG+++++ + a++giplt+++ ++ v   + +l++ +e ++++l+ +++tlv+++++ +++ ++e L+++ + 
    CTQ30336.1 306 IFGRGGEELETLCE--AGIPFSVVPGITAASGCSAYSGIPLTHRDFAQGVRlvTGHLKTGGELDWANLAVEKQTLVFYMGLNQAPAIREKLIAHgMT 400
                   **************..**********************************9999999*************************************877 PP

  TP_methylase 186 ddttpvavveragtedervvrgtleel 212
                   + + p+a+ve+++   ++vv gtl++l
    CTQ30336.1 401 E-DMPAAIVENGTAVTQKVVSGTLGQL 426
                   6.56*********************98 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   1.7e-29   4.2e-26       1     104 []       6     115 ..       6     115 .. 0.93
   2 ?    2.9   0.0     0.057   1.5e+02      10      86 ..     219     294 ..     212     300 .. 0.77

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 1.7e-29
  NAD_binding_7   1 lfldlkgkkvlvvGgGevAarkvrklleagakvtvvapevkeele.....elvklaeeel.ekdlegadlviaatddrelneriaeaakarrilvn 90 
                    +f++l+++ +l+vGgG+vA+rk+r ll+aga+vtv a +++++ +     + ++l + e+ ++ l++  l+iaatdd+ +n+++ eaa+arri++n
     CTQ30336.1   6 IFCQLRQRDCLLVGGGDVAERKARLLLDAGANVTVNALDFTPQFQvwadsQMLTLVQGEFiPSLLDNCWLAIAATDDETVNQQVSEAAEARRIFCN 101
                    799**********************************9986666677777888888888868********************************** PP

  NAD_binding_7  91 vadkpelcdfifpa 104
                    v+d p + +fi+p+
     CTQ30336.1 102 VVDAPRQASFIMPS 115
                    *************7 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.057
  NAD_binding_7  10 vlv.vGgGevAarkvrklle.agakvtvvapevkeeleelvklaeeelekdlegadlviaatddrelneriaeaakarr 86 
                    vlv +G G+ ++  ++ l + ++a+v+v++      ++++++l ++++++ + g    + +++++e+n+ + ++a++ r
     CTQ30336.1 219 VLVgAGPGDAGLLTLKGLQQiQQADVVVYDRL---VSDDIMNLVRRDADRVFVGKRSGYHCVPQEEINQILLREAQKGR 294
                    333345578899999999995569****9999...78899999999999888888888889999999988888886544 PP

>> CysG_dimeriser  Sirohaem synthase dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.3   5.9e+03      22      29 ..      92      99 ..      83      99 .. 0.43
   2 !   64.2   4.6   2.6e-21   6.6e-18       1      58 []     150     208 ..     150     208 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.3
                    SHHHHHHH CS
  CysG_dimeriser 22 dvaaRRrF 29
                      +aRR F
      CTQ30336.1 92 AAEARRIF 99
                    23456655 PP

  == domain 2  score: 64.2 bits;  conditional E-value: 2.6e-21
                     THHHHHHHHHHHHHHHHHH-SSHHHHHHHHHHHT.-HHHHHHHHTT-HHHHHHHHHHHH CS
  CysG_dimeriser   1 slGrLAelagrlRdrVkarlpdvaaRRrFWerff.dgpvaelvlaGdeeeAealleqaL 58 
                     +lG+LA++ag+lR+rVk+++++v +RRrFWe++f ++++a+++++ d++++   +eq+L
      CTQ30336.1 150 HLGQLARYAGHLRARVKQQFATVGERRRFWEKLFvNDRLAQSLANDDRQAVADTTEQLL 208
                     79*****************************************************9997 PP

>> Sirohm_synth_M  Sirohaem biosynthesis protein central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.2   3.6e-12   9.1e-09       1      27 [.     119     145 ..     119     146 .. 0.94
   2 ?   -2.6   0.0       1.5   3.9e+03      16      27 ..     156     167 ..     156     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 3.6e-12
  Sirohm_synth_M   1 rGpLQIaiSTnGksPrLAaliRreier 27 
                     r pL +a+S++G sP+LA+l+R+++e+
      CTQ30336.1 119 RSPLMVAVSSGGTSPVLARLLREKLES 145
                     67999*********************7 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
  Sirohm_synth_M  16 rLAaliRreier 27 
                     r+A  +R + ++
      CTQ30336.1 156 RYAGHLRARVKQ 167
                     78999**99887 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.62   1.6e+03      86     117 ..      20      49 ..       9      57 .. 0.76
   2 ?   -1.6   0.0       1.2   3.1e+03      76     104 ..     120     153 ..      88     179 .. 0.77
   3 ?   11.8   0.0   9.3e-05      0.24      29      83 ..     277     327 ..     254     363 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.62
                  SSCHGHHHHHHHHHTT-SEEEEEEBSSSHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  86 gtlpdeeklerllelgvdrvslgleaaddekv 117
                  g+ + e+k+++ll++g   v++++  +++  +
   CTQ30336.1  20 GGDVAERKARLLLDAG-ANVTVNALDFTPQ-F 49 
                  55566999******99.7777777777776.5 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
                  CTEEEEEEECSSCHG.....HHHHHHHHHTT-SE CS
                  xxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx RF
  Radical_SAM  76 pgiritvetngtlpd.....eeklerllelgvdr 104
                  + + ++v++ gt p      +ekle +l+l++ +
   CTQ30336.1 120 SPLMVAVSSGGTSPVlarllREKLESILPLHLGQ 153
                  5667888888888877777788888887777555 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 9.3e-05
                  HHHHHHHHHHHHHHHHTTSEEEEEESSTGGGSTTHHHHHHHHHHTCCCTEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  29 lsveeileevkelkaekgvkevilgggepllypdfvellerlaklavpgiritve 83 
                  +++eei +++ +  a kg ++v l gg+p+   +  e+le l++    gi ++v+
   CTQ30336.1 277 VPQEEINQILLRE-AQKGRRVVRLKGGDPFIFGRGGEELETLCEA---GIPFSVV 327
                  6899*****9999.7899**************************7...7776664 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0024       6.2       7      41 ..       7      40 ..       4      98 .. 0.88
   2 ?    3.5   0.0     0.028        71      13      45 ..     216     250 ..     206     289 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0024
                  HS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEE CS
  Shikimate_DH  7 leslkekkvlliGaGemaelvakhLlakgvkkvvv 41
                  + +l+++  ll+G G +ae+ a+ Ll++g++ v+v
    CTQ30336.1  7 FCQLRQRDCLLVGGGDVAERKARLLLDAGAN-VTV 40
                  6679999*********************998.776 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.028
                   -EEEEES-S..HHHHHHHHHHHCCT-CEEEEEESS CS
  Shikimate_DH  13 kkvlliGaG..emaelvakhLlakgvkkvvvaNRt 45 
                    +v+l+GaG    + l++k L + +  +vvv  R 
    CTQ30336.1 216 GEVVLVGAGpgDAGLLTLKGLQQIQQADVVVYDRL 250
                   5799999963379999*******99999***9995 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.012        30     139     172 ..       9      41 ..       1      59 [. 0.85
   2 ?    6.2   0.1     0.002       5.1       2      31 ..     217     263 ..     216     442 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.012
                  SS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 139 kllpkrivvvGgGyiGvElAaalaklgkevtlve 172
                  +l++++++ vGgG ++   A  l ++g++vt v 
   CTQ30336.1   9 QLRQRDCLLVGGGDVAERKARLLLDAGANVT-VN 41 
                  677899************************9.44 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.002
                  SEEEE--SH..HHHHHHHHHHH.HTS-EEEEE..............T CS
                  xxxxxxxxx..xxxxxxxxxxx.xxxxxxxxx..............x RF
  Pyr_redox_2   2 dvvviGgGp..AGlaaaltlaq.agakvtlve..............l 31 
                  +vv +G+Gp  AGl + + l+q ++a+v++++              +
   CTQ30336.1 217 EVVLVGAGPgdAGLLTLKGLQQiQQADVVVYDrlvsddimnlvrrdA 263
                  69******9667**********99*******6655444555555552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3546.95
//
Query:       CTQ30337.1  [L=334]
Description: tryptophanyl-tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-89  299.4   0.0    3.6e-89  299.0   0.0    1.2  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.0   0.0     2e-93   3.6e-89       5     292 ..       3     285 ..       1     286 [. 0.98

  Alignments for each domain:
  == domain 1  score: 299.0 bits;  conditional E-value: 2e-93
                   --EEEEEEETSSS-BGG.GHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHHHTTHHHH CS
  tRNA-synt_1b   5 plrvysGidPTgklHlG.ylvplkklvelqkaghevffliaDlhAiigdpskaeerklrkreevlenaikaqlakgldpekaevvlqsewlehlela 100
                   + +v+sG++P+g+l +G y+++l+++v++q + ++++ +i+D+hAi+++++   +++lrk++ ++ ++   +la+g+dp+k+++++qs+++eh +l 
    CTQ30337.1   3 KPIVFSGAQPSGELTIGnYMGALRQWVNMQ-DDYHCIYCIVDQHAITVRQD---PQQLRKATLDTLAL---YLACGIDPQKSTIFVQSHVPEHAQLG 92 
                   5689**************************.********************...**************...************************** PP

                   HHHHHHHTTCBHHHHHHHHHCCHHCSSSC--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHHHHHHHHHHH..STTSS-EEEEET....-B CS
  tRNA-synt_1b 101 ellrdlgklgslnrmlqfksvkkrleegegislgeftYplLqaaDilllkadlvpgGsDQkqnielgrdlarrfnkk..evfkkpegltvp....ll 191
                   + l++ + +g+l+rm+qfk+ + r++e  +i++g+f Yp+L+aaDill++++ vp+G+DQkq++el rd+a+rfn    ++fk pe+++++    ++
    CTQ30337.1  93 WALNCYTYFGELSRMTQFKDKSARYAE--NINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIAQRFNAIygDIFKVPEPFIPKsgarVM 187
                   ********************7777777..9******************************************************************* PP

                   BSTTSSSBTTCETTC..GC-BTTCCHHHHHHHHHHCHCSTTC..SHHHHHHHHHTHHHCHHHHHHHHCCSEEESSHHHHHHHHHCCCCHHHHHHHHH CS
  tRNA-synt_1b 192 tgldGekKmSKSagn..saIfLddekesvkkkiqkavtdsde..evekllklktelsnelierleavsgkkpkreaeellaeevtklvhggdlkkal 284
                   ++l+++kKmSKS++n  ++I L+++++sv+kki++avtdsde   v+++lk+k ++sn l+++l+av+gk+      el++ ++ k  ++g+lk ++
    CTQ30337.1 188 SLLEPTKKMSKSDDNrnNVIGLLEDPKSVVKKIKRAVTDSDEppVVRYDLKEKAGVSN-LLDILSAVTGKTI----PELEQHFEGK--MYGHLKGEV 277
                   **********************************************************.**********998....9*********..9******** PP

                   HHHHHHHH CS
  tRNA-synt_1b 285 aealnell 292
                   aea+  +l
    CTQ30337.1 278 AEAVSGML 285
                   ***98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2529.08
//
Query:       CTQ30338.1  [L=253]
Description: phosphoglycolate phosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-35  122.4   0.0    3.3e-35  121.8   0.0    1.3  1  HAD_2           Haloacid dehalogenase-like hydrolase
    3.7e-25   89.4   0.1    4.7e-25   89.1   0.1    1.1  1  Hydrolase       haloacid dehalogenase-like hydrolase
    4.4e-15   56.6   0.2    1.1e-14   55.3   0.2    1.6  1  HAD             haloacid dehalogenase-like hydrolase
    6.3e-11   42.2   0.0    1.6e-10   40.9   0.0    1.7  1  Hydrolase_like  HAD-hyrolase-like
    6.5e-06   26.1   0.0       0.74    9.5   0.0    3.1  3  Hydrolase_3     haloacid dehalogenase-like hydrolase
    0.00061   19.9   0.0      0.096   12.8   0.0    2.3  2  Hydrolase_6     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.0   1.1e-38   3.3e-35       1     176 [.      10     209 ..      10     211 .. 0.96

  Alignments for each domain:
  == domain 1  score: 121.8 bits;  conditional E-value: 1.1e-38
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee........................kieellrkyneekkk 75 
                 i FDlDgTl+d+ + + +a+ ++l   +l+   ee + + ig   + l++++    ++e                         ++ +l+++y++e  +
  CTQ30338.1  10 IAFDLDGTLVDSAPGLTSAVDNALYALELPVAGEERVITWIGNGADVLMERALTWARQERatlraamgkpsvddhdipqdeqlrILRKLFDRYYAEAAE 108
                 67***************************9*******************9999988877799**********************999999999999999 PP

       HAD_2  76 kevkpydgvkelLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagik 174
                 +   +++ v ++L  L ++g+ l++vT+k +  v   l++l+i +yF+v+++++dv++kKP+pe+++ + ekl l ++e ++vGDs +Di+aak+ag+ 
  CTQ30338.1 109 EGSFLFPAVADTLGALYAKGLPLALVTNKPTPFVAPLLDALDIAKYFTVVIGGDDVQNKKPHPEPLLLVAEKLSLAPAELLFVGDSRNDIQAAKAAGCC 207
                 9************************************************************************************************97 PP

       HAD_2 175 vi 176
                 ++
  CTQ30338.1 208 SV 209
                 76 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.1   1.6e-28   4.7e-25       1     210 []       7     205 ..       7     205 .. 0.80

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 1.6e-28
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH.HHHHHETTTE..HHHHTHHHHHHHHHCHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgal.tgfatfigrg..ayaigkpewltaldippdlgaaigsaqsq 96 
                 i+ ++fD+dGTL+++ p ++ +++ a                      +a +++ a  +++ t ig+g  ++++    w +++     l+aa+g+   +
  CTQ30338.1   7 IRGIAFDLDGTLVDSAPGLTSAVDNA---------------------LYALELPVAGeERVITWIGNGadVLMERALTWARQE--RATLRAAMGKPSVD 82 
                 6789**********************.....................888888777778888888888885555555555555..34444444444333 PP

                 CHHHHHH.........TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHH CS
                 xxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  97 grtvall.........qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaire 185
                 +++   +          +r++a+ + + + +++p +a+++ +L a+g++++l+t+    ++  +++ l+ ++yf +vi++d++  +kp+pe ++ ++++
  CTQ30338.1  83 DHDIPQDeqlrilrklFDRYYAEAAEEGS-FLFPAVADTLGALYAKGLPLALVTNKPTPFVAPLLDALDiAKYFTVVIGGDDVQNKKPHPEPLLLVAEK 180
                 33333333333333333377777777655.8******************************************************************** PP

                 HTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 186 LqgkpeevamVGDgvnDaaalaaAg 210
                 L   p+e ++VGD+ nD++a++aAg
  CTQ30338.1 181 LSLAPAELLFVGDSRNDIQAAKAAG 205
                 ************************8 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.2   3.6e-18   1.1e-14       1     188 []      10     202 ..      10     202 .. 0.71

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 3.6e-18
         HAD   1 alfDfDgTLldgdsle.lllrfllrrgaprlwralreklllal........frellrldraglaellea.......llaglseelaaelerfv...... 77 
                 + fD+DgTL+d+ ++    +++ l   +++ + + r+ ++           + + +r++ra l++++ +       +      + +++l+ ++      
  CTQ30338.1  10 IAFDLDGTLVDSAPGLtSAVDNALYALELPVAGEERVITWIGNgadvlmerALTWARQERATLRAAMGKpsvddhdI------PQDEQLRILRklfdry 102
                 57**********55555666667777666667777777555555566633344444444444444443354444442......3333333333444444 PP

         HAD  78 .aevirpk..lldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidlee 173
                  ae++++   l+ p + + l a  a+G ++++v++ + p+v pll++l+    +a       ++t     +g++  ++ k++     l ae+  ++++e
  CTQ30338.1 103 yAEAAEEGsfLF-PAVADTLGALYAKGLPLALVTNKPTPFVAPLLDALD----IAK------YFTVV---IGGDDVQNKKPHPEPLLLVAEKLSLAPAE 187
                 455555556455.********888*************************....***......99999...788888889999999999*********** PP

         HAD 174 vvayGDspsDlpllr 188
                 + ++GDs++D+++++
  CTQ30338.1 188 LLFVGDSRNDIQAAK 202
                 *************96 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   5.3e-14   1.6e-10       3      74 ..     167     235 ..     165     236 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 5.3e-14
                     STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEES CS
  Hydrolase_like   3 gKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddlae 74 
                      KP+pe +   +e+l+++p+e l++GD+ + Di++A++aG+ sv  + G +  e l++   +p+y +d++ e
      CTQ30338.1 167 KKPHPEPLLLVAEKLSLAPAELLFVGDS-RNDIQAAKAAGCCSVGLTYGYNYGEPLALS--EPDYLFDQFNE 235
                     6***************************.*********************999998855..6****999887 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00041       1.2       1      24 [.      10      33 ..      10      38 .. 0.80
   2 ?    4.1   0.0     0.011        32      20      58 ..     117     155 ..     108     168 .. 0.85
   3 !    9.5   0.0   0.00025      0.74     194     223 ..     176     205 ..     172     209 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00041
                 EEEEIIIIIS-TTS---HHHHHHH CS
  Hydrolase_3  1 ialDlDGTLlnsdkkisektkeai 24
                 ia+DlDGTL++s   ++    +a+
   CTQ30338.1 10 IAFDLDGTLVDSAPGLTSAVDNAL 33
                 89*********9887777776666 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.011
                  HHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEE CS
  Hydrolase_3  20 tkeaikklkekgikvviATGRslravlpvleelgldlpv 58 
                   ++++  l +kg  +++ T  ++ +v p+l++l++  ++
   CTQ30338.1 117 VADTLGALYAKGLPLALVTNKPTPFVAPLLDALDIAKYF 155
                  67889999**************************98554 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00025
                  HHHHHCT--GGGEEEEESSGGGHHHHHHSS CS
  Hydrolase_3 194 klakelnisleeviafGDgeNDieMLeaag 223
                   +a++l++ ++e + +GD+ NDi+  +aag
   CTQ30338.1 176 LVAEKLSLAPAELLFVGDSRNDIQAAKAAG 205
                  6899*******************9888887 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.011        32       1      25 [.      10      35 ..      10      51 .. 0.74
   2 !   12.8   0.0   3.2e-05     0.096      15      41 ..     113     139 ..     107     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.011
                 EEEESTTTSEETT.EE-TTHHHHHHH CS
  Hydrolase_6  1 flfDidGvLwrgd.kaipgaaealna 25
                 ++fD+dG+L++    +   +++al a
   CTQ30338.1 10 IAFDLDGTLVDSApGLTSAVDNALYA 35
                 68********8541444555555555 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.2e-05
                  E-TTHHHHHHHHHHTT-EEEEEE---S CS
  Hydrolase_6  15 aipgaaealnalraagkpvvllTNnss 41 
                  ++p +a++l al a+g p++l+TN+ +
   CTQ30338.1 113 LFPAVADTLGALYAKGLPLALVTNKPT 139
                  79**********************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1987.01
//
Query:       CTQ30339.1  [L=225]
Description: D-ribulose-5-phosphate 3-epimerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-91  304.8   0.0    2.3e-91  304.6   0.0    1.0  1  Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
      9e-06   25.6   0.0     0.0033   17.2   0.0    2.5  3  QRPTase_C       Quinolinate phosphoribosyl transferase, C-ter
    0.00039   19.6   2.6       0.05   12.6   0.1    2.2  2  FMN_dh          FMN-dependent dehydrogenase
  ------ inclusion threshold ------
      0.014   14.8   0.0      0.074   12.4   0.0    1.9  2  TMP-TENI        Thiamine monophosphate synthase
      0.036   14.7   0.0       0.49   11.0   0.0    2.2  2  PGM_PMM_II      Phosphoglucomutase/phosphomannomutase, alpha/
      0.062   12.3   0.5        2.1    7.2   0.0    2.1  2  IMPDH           IMP dehydrogenase / GMP reductase domain
      0.096   11.1   0.1       0.26    9.6   0.0    1.6  2  Orbi_VP5        Orbivirus outer capsid protein VP5
       0.12   12.1   0.6       0.36   10.6   0.1    2.1  2  DUF4516         Domain of unknown function (DUF4516)


Domain annotation for each model (and alignments):
>> Ribul_P_3_epim  Ribulose-phosphate 3 epimerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.6   0.0     1e-94   2.3e-91       2     198 .]       6     203 ..       5     203 .. 0.99

  Alignments for each domain:
  == domain 1  score: 304.6 bits;  conditional E-value: 1e-94
                     EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSS-B-B-HHHHHHHGGG.E-S-EEEEEESSSHHHCHHHHHHCT-SEEEEE-ST-TTHH CS
  Ribul_P_3_epim   2 iapSllsadfarlgeevkaveeagadllHvDvmDghfvpNltigplvvealrkl.telpldvHLmveevdrivpefaeagasiisvHaEalehlk 95 
                     iapS+lsadfarlge+ +++ +agad++H+DvmD+h+vpNltigp+v+++lr++ +++p+dvHLmv++vdri+p+faeagasii++H+Ea+eh++
      CTQ30339.1   6 IAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYgITAPIDVHLMVKPVDRIIPDFAEAGASIITFHPEASEHVD 100
                     9*****************************************************989************************************** PP

                     HHHHHHHHTTSEEEEEE-TT--GGGGTTTCCC-SEEEEESS-TT-SS----CCHHHHHHHHHHHHHHHT---EEEEESS--TTTCHHHHHHT--E CS
  Ribul_P_3_epim  96 rtiqeikeaGakaglvlnpatplealeyllekldlvllmsvePgfgGQkFipevlekikkvrklidekeldlkievDGGvkldnieqiaeagadv 190
                     r +q ike+G+kaglv+npatpl++l+y+++kld++llmsv+PgfgGQ+Fip++l+k+++vr++id++++d+++evDGGvk+ ni +ia+agad+
      CTQ30339.1 101 RSLQLIKEHGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLREVRQRIDASGYDIRLEVDGGVKASNIGEIAAAGADM 195
                     *********************************************************************************************** PP

                     EEESHHHH CS
  Ribul_P_3_epim 191 lVagsavf 198
                     +Vagsa+f
      CTQ30339.1 196 FVAGSAIF 203
                     *******9 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0066        15      91     112 ..      20      41 ..      16      47 .. 0.86
   2 ?   -1.9   0.0       1.1   2.4e+03      96     124 ..      81     109 ..      51     115 .. 0.78
   3 !   17.2   0.0   1.5e-06    0.0033     110     158 ..     154     202 ..     126     208 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0066
                 HHHHHHHHHT-SEEEEES--HH CS
   QRPTase_C  91 eeleevleaeadiimLDnfsve 112
                 e++ ++l+a+ad++ +D ++ +
  CTQ30339.1  20 EDTAKALAAGADVVHFDVMDNH 41 
                 8899*************99865 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.1
                 HHHHT-SEEEEES--HHHHHHHHHHHHHH CS
   QRPTase_C  96 vleaeadiimLDnfsveelkkaveelkek 124
                  +ea+a+ii +    +e++ + ++++ke+
  CTQ30339.1  81 FAEAGASIITFHPEASEHVDRSLQLIKEH 109
                 46788888888888888888888877765 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 1.5e-06
                 -HHHHHHHHHHHHHHSTTSEEEEESS--TTTHHHHHCTT-SEEEECHHC CS
   QRPTase_C 110 sveelkkaveelkeknkrvlievSGgvtlenveeyaksgvdvisvgalt 158
                 + ++l+++ +++++   ++++ev Ggv+  n+ e+a  g d++  g+++
  CTQ30339.1 154 TLDKLREVRQRIDASGYDIRLEVDGGVKASNIGEIAAAGADMFVAGSAI 202
                 457888888888899999**************************99987 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.3    0.0013         3     281     298 ..      17      34 ..      15      35 .. 0.91
   2 !   12.6   0.1   2.2e-05      0.05     254     327 ..     151     220 ..     146     222 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0013
                 -SHHHHHHHHHTT-SEEE CS
      FMN_dh 281 rrGsDvlkAlalGAdavl 298
                 r G+D +kAla GAd+v 
  CTQ30339.1  17 RLGEDTAKALAAGADVVH 34 
                 67*************995 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.2e-05
                 ---HHHCHHHHHHHH.....SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      FMN_dh 254 apatidvLpeiveavgg...rievlvDgGirrGsDvlkAlalGAdavllGRpflyglaagGeeGvervleilraele 327
                  p t+d L e++++++    +i + vDgG++  s +    a GAd+ + G       a+ G+   ++v++ +r+el 
  CTQ30339.1 151 IPQTLDKLREVRQRIDAsgyDIRLEVDGGVK-ASNIGEIAAAGADMFVAGS------AIFGQPDYKQVIDQMRSELA 220
                 689********9998855669********96.6889999999999866665......55889999999999999987 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.21   4.6e+02      15      32 ..      18      35 ..       4      69 .. 0.67
   2 ?   12.4   0.0   3.3e-05     0.074     135     181 .]     151     202 ..     124     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.21
    TMP-TENI 15 llevveealkggvtlvql 32
                l e   +al++g+++v++
  CTQ30339.1 18 LGEDTAKALAAGADVVHF 35
                555555555555555554 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 3.3e-05
    TMP-TENI 135 eplgleglkelaeale.....iPvvaiGGitlenvaevleagadgvavvsai 181
                  p+ l++l+e+++++      i + + GG++++n+ e+++agad+    sai
  CTQ30339.1 151 IPQTLDKLREVRQRIDasgydIRLEVDGGVKASNIGEIAAAGADMFVAGSAI 202
                 6899999******999999999**********************99988887 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00022      0.49      61      91 ..      89     119 ..      51     121 .. 0.87
   2 ?    1.3   0.0      0.24   5.5e+02      54      91 ..     141     178 ..     124     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
                 SS----TT-TTTTHHHHGGGGG-SEEEEE-T CS
  PGM_PMM_II  61 kapnpeekealkllielvkkegadlglafDg 91 
                  + +pe++e++++  +l+k++g+++gl+f +
  CTQ30339.1  89 ITFHPEASEHVDRSLQLIKEHGCKAGLVFNP 119
                 5679************************988 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.24
                 --TT-TTSS----TT-TTTTHHHHGGGGG-SEEEEE-T CS
  PGM_PMM_II  54 pdpdfptkapnpeekealkllielvkkegadlglafDg 91 
                  +p f++++  p+  + l+++ + ++++g+d+ l +Dg
  CTQ30339.1 141 VNPGFGGQSFIPQTLDKLREVRQRIDASGYDIRLEVDG 178
                 6788999777777778999999*********9999998 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.014        31     220     233 ..      20      33 ..      12      38 .. 0.87
   2 ?    7.2   0.0   0.00095       2.1     203     241 ..     167     204 ..     152     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.014
                 HHHHHHHHTT-SEE CS
                 xxxxxxxxxxxxxx RF
       IMPDH 220 gdivkAlaaGadav 233
                 +d +kAlaaGad+v
  CTQ30339.1  20 EDTAKALAAGADVV 33 
                 799*********98 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00095
                 HCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 203 akkagvpviaDGGikysgdivkAlaaGadavmlGsllag 241
                 a+ +++++  DGG+k s +i    aaGad+ + Gs + g
  CTQ30339.1 167 ASGYDIRLEVDGGVKAS-NIGEIAAAGADMFVAGSAIFG 204
                 566789999*****987.689999**********98765 PP

>> Orbi_VP5  Orbivirus outer capsid protein VP5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.39   8.8e+02     390     405 ..      27      42 ..      19      46 .. 0.84
   2 ?    9.6   0.0   0.00012      0.26     184     226 ..     157     200 ..     152     204 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.39
    Orbi_VP5 390 dlgidvvhfedltshw 405
                   g dvvhf+ +  h+
  CTQ30339.1  27 AAGADVVHFDVMDNHY 42 
                 5699*****9999987 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00012
    Orbi_VP5 184 mvkeyrqkidalksaieierdg.mqeeaiqeiagmtadvleaas 226
                  ++e rq+ida    i +e dg ++   i eia   ad++ a s
  CTQ30339.1 157 KLREVRQRIDASGYDIRLEVDGgVKASNIGEIAAAGADMFVAGS 200
                 5789****************96378899**********998876 PP

>> DUF4516  Domain of unknown function (DUF4516)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00016      0.36      20      41 ..      25      51 ..      23      55 .. 0.87
   2 ?   -2.2   0.0       1.6   3.5e+03      28      38 ..      67      77 ..      67      82 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
     DUF4516 20 sMlaGAqvVH.....lyYkPdltipei 41
                +++aGA vVH     ++Y P+lti ++
  CTQ30339.1 25 ALAAGADVVHfdvmdNHYVPNLTIGPM 51
                799*******999999*******9765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.6
     DUF4516 28 VHlyYkPdlti 38
                VHl  kP  +i
  CTQ30339.1 67 VHLMVKPVDRI 77
                99999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1728.50
//
Query:       CTQ30340.1  [L=275]
Description: DNA adenine methylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-70  236.3   0.4    5.5e-70  236.0   0.4    1.0  1  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran
  ------ inclusion threshold ------
       0.16   11.6   0.0       0.37   10.4   0.1    1.6  2  Cons_hypoth95    Conserved hypothetical protein 95


Domain annotation for each model (and alignments):
>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.0   0.4   6.1e-74   5.5e-70       1     254 [.      10     248 ..      10     252 .. 0.93

  Alignments for each domain:
  == domain 1  score: 236.0 bits;  conditional E-value: 6.1e-74
                      STTTSCTTHHHHHCCS-..--SEEEETT-TTSCCHHCS...SSCEEEEES-HHHHHHHHHHCCHSHHHHHHHHH.TCTTGGC.TSHHHHHHHHH CS
  MethyltransfD12   1 YiGgKrkllpeIkelipkdkgktfvepFaGggaVffeakkqgkkvlinDinedlinlykaliknnveelikelekllekeelenereyfyelre 94 
                      ++GgK  ll+ Ik+++p   g++++epF+G+g+Vf+++  ++ +++++Din+dli ly+ ++k +++e++ ++++++   e+ n  e +y  r+
       CTQ30340.1  10 WAGGKFPLLDDIKKHLP--EGECLIEPFVGAGSVFLNT--DFSRYILADINSDLIGLYN-IVKLRTDEYVAAAREMFTP-EN-NVAERYYLYRD 96 
                      9****************..699****************..*******************.9999**********85544.54.89********* PP

                      HHH...HHH-HHHHHHHHHHHHCCBGGG---B-TTS-B---B-S-SS-....HHHHHHHHHHHHHCCEEEC-CHHHHTT--TTE.EEEE--S-T CS
  MethyltransfD12  95 efnkkidaireaeeaidflylnrllfsglervnkkgnfnvpygaykkpkkvaekelklrseklknakiecgdfdavllkakieddivYlDPPYn 188
                      efn   ++ +  ++a++flylnr++++gl+r+n +g+fnvp+g+ykkp +++e+el +++ek++na+++c+++++ +++a+ ++ +vY+DPPY+
       CTQ30340.1  97 EFN---QSQDPLRRAVLFLYLNRHGYNGLCRYNLRGEFNVPFGRYKKP-YFPEAELYHFAEKAQNAEFYCESYEECMQRADSRT-VVYCDPPYA 185
                      ***...77777779**********************************.*******************************5555.********* PP

                      .S...TS--GGGG.CS-HHHHHHHHHHHHHH.HHTT-EEEEEEESEESHHHHHHCTT...SEEEEE CS
  MethyltransfD12 189 prqytanytlyetlafsdedevrlaevlkslsskfgvkvllsnsfkdtklfrelyksYnnesilev 254
                      p+  tan+t y+t++f+ e++v la+ ++sl  k+ ++vl+sn+   t l++e+yk+  +++i++v
       CTQ30340.1 186 PLTATANFTAYHTNSFNLEQQVLLAQKAESL-MKKRIPVLISNH--RTPLTQEWYKNAAETHIVKV 248
                      *******************************.6***********..***********555555544 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.38   3.4e+03      42      58 ..      28      44 ..      19      52 .. 0.72
   2 ?   10.4   0.1   4.1e-05      0.37     100     152 ..     164     213 ..     145     244 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.38
                   C-EEEETT-TTSHHHHH CS
  Cons_hypoth95 42 garvLDlfaGsGalglE 58
                   g+ +++ f G G++ l 
     CTQ30340.1 28 GECLIEPFVGAGSVFLN 44
                   4445799*****99875 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 4.1e-05
                    -HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHHHHH.HTT-EEEEEEEEEEE CS
  Cons_hypoth95 100 aleallklakkkeefdivflDPPyakellieevlelle.ekkllkenalvvvet 152
                    ++e++    +++ +  +v+ DPPya   +  + +++ + ++  l++++l+  + 
     CTQ30340.1 164 SYEEC---MQRADSRTVVYCDPPYAPLTA-TANFTAYHtNSFNLEQQVLLAQKA 213
                    33333...344556689********9887.444444440334455555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2184.21
//
Query:       CTQ30341.1  [L=427]
Description: hypothetical protein CH1034_350037 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-12   45.8   0.0    1.1e-11   44.9   0.0    1.5  1  SPOR      Sporulation related domain
     0.0072   16.7   1.7     0.0072   16.7   1.7    2.6  2  PBP1_TM   Transmembrane domain of transglycosylase PBP1 at N-


Domain annotation for each model (and alignments):
>> SPOR  Sporulation related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   1.2e-15   1.1e-11       1      74 [.     343     416 ..     343     418 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 1.2e-15
                 -TTBB--BS-EES-HHHHHHHHHHCCHHT--...EEECCSSSCEEEEESSBCTCCHHHHHHHHCH.HHHTTS--B CS
        SPOR   1 asggytvQvgafsseanAerlaakLrakgfaaavavvsgggglyrVrvGpfasreeAqaalkkLk.aaagisafv 74 
                 +sg+yt+Q+ ++s+ +n +++a+k +   + ++  ++++g+++y ++ G +as++eA++a   L+ +++  ++++
  CTQ30341.1 343 PSGHYTLQLSSSSNYDNLNNWAKKEKLDKYVVY-ETSRNGQPWYVLVSGIYASKDEAKRAVTSLPaDVQAKNPWA 416
                 589***************************999.*******************************9889999997 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   7.5     0.099   8.9e+02      20      63 ..      12      56 ..       5      58 .. 0.64
   2 !   16.7   1.7     8e-07    0.0072      18      78 ..      46     110 ..      42     116 .. 0.51

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.099
     PBP1_TM 20 parkkasrrrrr.dddyddeyddeedDdddddeeeevprkgkkkk 63
                + r+ ++  r r   + d + + + dD d d +e   +r gk+++
  CTQ30341.1 12 ADRNDRRAGRSRqSSERDADPQINFDDVDLDADEGRPTRAGKARR 56
                334433333333234445566888899998999999999999887 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 8e-07
     PBP1_TM  18 akparkkasrrrrrdddyddeyddeedDdddddeeeevprkgkkk.kpprkkrrw...lwllikl 78 
                  +p+r+ ++rr r+++++++e d + ++  +++  e  prk kk+ ++p +++      ++l+ l
  CTQ30341.1  46 GRPTRAGKARREREEEEFEEELDAQDEEMLEEQPVERRPRKRKKApAKPASRQYImmgVGILVLL 110
                 47888889998899999999666643333344444444666333302233333321112223322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1763  (0.0983323); expected 358.6 (0.02)
Passed bias filter:                      646  (0.036031); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.35s 00:00:01.10 Elapsed: 00:00:00.48
# Mc/sec: 2699.78
//
Query:       CTQ30342.1  [L=364]
Description: 3-dehydroquinate synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.1e-111  369.6   0.0   8.5e-111  369.3   0.0    1.1  1  DHQ_synthase  3-dehydroquinate synthase
    1.3e-15   57.8   0.1    2.7e-14   53.5   0.1    2.1  1  Fe-ADH_2      Iron-containing alcohol dehydrogenase
    5.1e-07   28.8   0.8      8e-06   24.9   0.1    2.1  2  Fe-ADH        Iron-containing alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  369.3   0.0  1.4e-114  8.5e-111       2     261 ..      67     325 ..      66     326 .. 0.99

  Alignments for each domain:
  == domain 1  score: 369.3 bits;  conditional E-value: 1.4e-114
                   EEE-SSGGGCCHHHHHHHHHHHHHTT--TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE---SEE CS
  DHQ_synthase   2 lvvpdgeksKsletlekildalleakleRksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgKNliGafaqPkav 98 
                   +++pdge++Ksl+ + ++++all++ + R+++l+alGGGv+gDl+Gf+Aa y+RGvrf+qvPttll+qvDssvGgKta+n+plgKN+iGaf+qP  v
    CTQ30342.1  67 VILPDGEQYKSLAVMDTVFTALLQKPHGRDTTLVALGGGVIGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFWQPVSV 163
                   689********************************************************************************************** PP

                   EEEGGGGGGS-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHCCTTTTGGGGGGTTHHHHHHHHHHHTT CS
  DHQ_synthase  99 lidlevLktLperelraGlaEviKyalikdeelfelleenaeallkeeeeealeeliarsievkaevveeDekekglralLnlGHtigHaiEallgy 195
                   ++dl++LktLp+rel++GlaEviKy++i d e+f++le+n +all+  +++a++++i+r++e+kaevv++De+e+glralLnlGHt+gHaiEa++gy
    CTQ30342.1 164 VVDLNCLKTLPKRELASGLAEVIKYGVILDGEFFSWLENNIDALLAL-DDTAMAYCIRRCCELKAEVVAADERETGLRALLNLGHTFGHAIEAEMGY 259
                   ********************************************996.9************************************************ PP

                   TTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT.-HHHHHHHHTTCTTX CS
  DHQ_synthase 196 ekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkelleveellealkkDkkv 261
                   +++lHGeaVa+Gmv+aa++se+lg +++++++r+++llk++glpv+ +++++++++l ++++Dkkv
    CTQ30342.1 260 GNWLHGEAVAAGMVMAARTSERLGQFRAQDTQRIIELLKRAGLPVRGPQEMSAQAYLPHMMRDKKV 325
                   *****************************************************************7 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.1   4.5e-18   2.7e-14       2     248 ..      17     267 ..      16     269 .. 0.66

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 4.5e-18
    Fe-ADH_2   2 igegaleklgellkelelkkvllvadentkkaagekveeslkeagikve..vveeveeeadleeveklveal...reketdlvvavGgGtiiDiakyv. 94 
                 i+ g  ++ +++l  +++++++lv++e+   ++ + v+++l+++g++v+  ++ + e+ ++l  +  + +al    + + + +va+GgG+i D++ ++ 
  CTQ30342.1  17 IAAGLFNDPASFLPLKSGDQAMLVTNETLAPLYLDTVRSALEQSGVNVDsvILPDGEQYKSLAVMDTVFTALlqkPHGRDTTLVALGGGVIGDLTGFAa 115
                 6677788888889999999*****************************86666777777777777777777754322344589************9862 PP

    Fe-ADH_2  95 .saklnvpyvsvpTaa......SvDGfaspgaslvvdgkkrtvakaaaPlaviaDldvlaeAPrrllasGvGDllgkytala....dwklanevsepla 182
                  s++++v+++ vpT++      Sv G ++++ +l ++     +     P+ v++Dl+ l++ P+r lasG+++++ ky  +      ++l+n++++ la
  CTQ30342.1 116 aSYQRGVRFIQVPTTLlsqvdsSVGGKTAVNHPLGKNM----IGAFWQPVSVVVDLNCLKTLPKRELASGLAEVI-KYGVILdgefFSWLENNIDALLA 209
                 268999********974433335666666666666554....444567**************************9.55555513344555666666544 PP

    Fe-ADH_2 183 klsaamvqeaaeklvedkketealeelleal.alsgigisrpaSGsEHliSHaldmlal.kqalHGeq 248
                 +   am   +++++ e k+e+ a  e  ++l al  +          H + Ha++++    ++lHGe 
  CTQ30342.1 210 LDDTAM-AYCIRRCCELKAEVVAADERETGLrALLNL---------GHTFGHAIEAEMGyGNWLHGEA 267
                 444433.345555554333333332222222111111.........2555666655543355566655 PP

>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   1.3e-09     8e-06      22     187 ..      34     184 ..      23     188 .. 0.81
   2 !    2.4   0.1    0.0094        56     248     327 ..     243     304 ..     220     325 .. 0.62

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.3e-09
                 -..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEE..E.EEE-S---HHHHHHHHTTS-TT...--E.EEEEESHHHHHHHHHHHHHTT.......... CS
      Fe-ADH  22 gakralivtdkgslkksglldkvlesleeagievt..vfdgvepnptleeveeaaalaree..gadv.viavGGGsviDtAKaialllanpevedylge 115
                 g ++a++vt + ++    +ld+v+++le++g++v+  +  + e+  +l+ ++ +  ++ ++  g d+ ++a+GGG   D+   +a+ +++         
  CTQ30342.1  34 G-DQAMLVTNETLA--PLYLDTVRSALEQSGVNVDsvILPDGEQYKSLAVMDTVFTALLQKphGRDTtLVALGGGVIGDLTGFAAASYQR--------- 120
                 4.689*******87..559***********999988788999999*******9999885551145545*********************5......... PP

                 ........--EEEEESS-S-S-TT-SEEEEE.-TTS.EEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHH CS
      Fe-ADH 116 gkakkkkalpliaiPTtaGtGsevtplavitdeeeg.eklsifdpellPdlaivDpeltltlPkrvtaatglD 187
                        ++++i +PTt    s+v +        ++   + +   +  P  ++vD + + tlPkr +a++ + 
  CTQ30342.1 121 -------GVRFIQVPTTL--LSQVDSSVGGKTAVNHpLGKNMIGAFWQPVSVVVDLNCLKTLPKRELASGLAE 184
                 .......59********8..55565555555333333445555679**********************99776 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.0094
                 HSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH..........HHHHHHT.......T--HHHHHHHHHHHHHTT--- CS
      Fe-ADH 248 snaglgavHalahalgalfgiphglanaillpavlrfnaeaaperlaqlaralggesdeeaaeeliealrellkelglpt 327
                  n g +  Ha++ ++g         +++++++a++ + a ++ erl q+             ++  ++++ellk+ glp+
  CTQ30342.1 243 LNLGHTFGHAIEAEMGY-----GNWLHGEAVAAGMVMAA-RTSERLGQFR------------AQDTQRIIELLKRAGLPV 304
                 34444444555555554.....44556666666663333.2223433333............234567777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2669.93
//
Query:       CTQ30343.1  [L=173]
Description: shikimate kinase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-56  189.4   0.5    4.9e-56  189.2   0.5    1.0  1  SKI              Shikimate kinase
    8.3e-09   35.7   0.1    6.5e-07   29.6   0.1    2.1  1  AAA_33           AAA domain
    6.9e-08   33.1   0.0    9.4e-08   32.7   0.0    1.2  1  AAA_18           AAA domain
    4.5e-06   26.9   0.2    0.00037   20.7   0.0    2.4  2  Cytidylate_kin2  Cytidylate kinase-like family
    1.6e-05   24.7   0.6    0.00015   21.6   0.0    2.4  3  Cytidylate_kin   Cytidylate kinase
      3e-05   24.0   0.1      0.022   14.6   0.0    2.2  2  dNK              Deoxynucleoside kinase
    0.00067   20.1   0.1     0.0023   18.3   0.1    1.9  1  AAA_16           AAA ATPase domain
    0.00085   19.8   0.0     0.0021   18.5   0.0    1.8  1  AAA              ATPase family associated with various cellul
      0.001   19.3   0.0     0.0016   18.7   0.0    1.5  1  AAA_22           AAA domain
     0.0024   17.9   0.0     0.0044   17.0   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0025   18.3   0.2     0.0084   16.6   0.2    1.9  1  ABC_tran         ABC transporter
     0.0036   17.2   0.1     0.0075   16.2   0.1    1.6  1  APS_kinase       Adenylylsulphate kinase
     0.0045   16.5   0.0     0.0095   15.5   0.0    1.6  1  AAA_7            P-loop containing dynein motor region
     0.0088   16.5   2.5      0.065   13.7   1.4    2.7  2  AAA_17           AAA domain
     0.0092   16.0   0.0      0.023   14.7   0.0    1.6  2  AAA_5            AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.017   15.0   0.0    1.3  1  Ploopntkinase3   P-loop Nucleotide Kinase3
      0.016   15.6   0.0      0.029   14.8   0.0    1.6  1  RNA_helicase     RNA helicase
      0.023   13.6   0.0      0.043   12.7   0.0    1.4  1  AAA_PrkA         PrkA AAA domain
      0.025   14.1   0.3       0.15   11.6   0.3    2.0  1  AAA_25           AAA domain
       0.03   14.4   1.1       0.48   10.5   1.1    2.3  2  AAA_2            AAA domain (Cdc48 subfamily)
      0.032   14.5   0.0        0.2   11.9   0.0    2.1  2  AAA_28           AAA domain
      0.037   13.5   0.1      0.047   13.1   0.1    1.2  1  His_biosynth     Histidine biosynthesis protein
      0.043   13.6   0.0      0.079   12.7   0.0    1.4  1  AAA_29           P-loop containing region of AAA domain
      0.044   13.7   0.0      0.096   12.6   0.0    1.6  1  RsgA_GTPase      RsgA GTPase
      0.062   13.0   0.0       0.11   12.3   0.0    1.3  1  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.071   12.8   0.0      0.095   12.4   0.0    1.3  1  AAA_24           AAA domain
      0.076   12.4   0.1       0.12   11.7   0.0    1.6  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.078   13.1   0.1        0.4   10.8   0.1    2.3  1  MMR_HSR1         50S ribosome-binding GTPase
      0.098   12.2   0.0       0.11   12.0   0.0    1.4  1  GTP_EFTU         Elongation factor Tu GTP binding domain
        0.1   12.3   0.0        0.2   11.4   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
       0.11   12.5   0.1       0.35   10.9   0.0    1.9  2  AAA_14           AAA domain


Domain annotation for each model (and alignments):
>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.2   0.5   8.5e-59   4.9e-56       1     157 [.      13     170 ..      13     171 .. 0.99

  Alignments for each domain:
  == domain 1  score: 189.2 bits;  conditional E-value: 8.5e-59
                 TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHH CS
         SKI   1 mGaGKstvGkllAkklglefiDlDeliekrtgksiaeifeeegeegFrelEsevlkelleeeglViatGGGavlseenrellkekgiviyLdvsleell 99 
                 mGaGKst+G++lA++l++ef+D+D++iekrtg+++ ++f+ egeegFr++E+++++el+e++g+V+atGGG+v s+e+r+ l+++g+v+yL++++e++l
  CTQ30343.1  13 MGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDVEGEEGFRDREEKIINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQL 111
                 9************************************************************************************************** PP

                 HHHHHTTSSGGGCSCHHHHHHHHHHH.HHHHHHCCSSCEEEECTSSHHHHHHHHHHHHH CS
         SKI 100 erlkadkeRPllqekskeeelleela.ereplyeeaadvvvdeseeskeevaeeileal 157
                 +r+++dk+RPllq + + +e+le la er+plyee+adv+++++++s++ va++i+++l
  CTQ30343.1 112 ARTQRDKKRPLLQVDAPPREVLEALAdERNPLYEEIADVTIRTDDQSAKVVANQIIHML 170
                 *******************************************************9877 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.1   1.1e-09   6.5e-07       2      62 ..       7      70 ..       7     166 .. 0.61

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.1e-09
      AAA_33  2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfg......tdqqsktdytrvldrlyqilnel 62
                ++lvG+ G+GKst  ++l+++l +++ +sd+++++ +g       d++ ++    ++dr  +i+nel
  CTQ30343.1  7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGadvgwvFDVEGEE---GFRDREEKIINEL 70
                689****************************88887773333332222221...1223333333333 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.6e-10   9.4e-08       1     114 [.       7     140 ..       7     156 .. 0.73

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.6e-10
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf......gvnlrdvakenglllevdpealdeskrldedkldklldaleenss..................aleegk 75 
                 I+l G++G+GK+t+++ L++ l++       ++ + + ++ g++++v+ e      +  +d+ +k++++l e                      ++ g 
  CTQ30343.1   7 IFLVGPMGAGKSTIGRQLAQQLNMefydsdQEIEKRTGADVGWVFDVEGE------EGFRDREEKIINELTEKQGivlatgggsvksretrnrLSARGV 99 
                 99*******************99998887744444444455555555555......3333333334444444433444555566667779998899999 PP

      AAA_18  76 nlvidghlaeleseaakdikk..vvLtaspeelleRlekRg 114
                 +++++  +++ +   ++d+k+    ++a+p e le l++ +
  CTQ30343.1 100 VVYLETTIEKQLARTQRDKKRplLQVDAPPREVLEALADER 140
                 99****************99999999999999998777765 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   6.3e-07   0.00037       7      31 ..      12      36 ..       6      57 .. 0.83
   2 ?    4.5   0.1     0.059        34      78     108 ..      56      85 ..      40     166 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 6.3e-07
  Cytidylate_kin2  7 eyGsgGetigeaLAekLglpfydre 31
                      +G+g++tig++LA++L+++fyd +
       CTQ30343.1 12 PMGAGKSTIGRQLAQQLNMEFYDSD 36
                     68*********************85 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.059
  Cytidylate_kin2  78 ddelfeaqervirelaaeesvVivGRgadli 108
                      ++ +++++e++i+el ++ +++++  g+  +
       CTQ30343.1  56 EEGFRDREEKIINELTEK-QGIVLATGGGSV 85 
                      5567788999*****977.666665555433 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.6e-07   0.00015       3      29 ..       9      35 ..       7      39 .. 0.91
   2 ?    0.3   0.3      0.84   4.9e+02     150     179 ..      93     122 ..      82     134 .. 0.72
   3 ?   -0.5   0.2       1.5   8.6e+02     178     178 ..     139     139 ..      98     172 .. 0.53

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.6e-07
                    EE-STTSSHHHHHHHHHHHHT-EEEEH CS
  Cytidylate_kin  3 iDGPagsGKssvaralaeklglkyldt 29
                    + GP g+GKs+++r+la++l++++ d+
      CTQ30343.1  9 LVGPMGAGKSTIGRQLAQQLNMEFYDS 35
                    56**********************998 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.84
                     HHHHTT----HHHHHHHHHHHHHHHHCTSS CS
  Cytidylate_kin 150 qlkakgtsvsleellaeikeRDklDkerev 179
                      l+a+g  v le+ +++  +R ++Dk+r +
      CTQ30343.1  93 RLSARGVVVYLETTIEKQLARTQRDKKRPL 122
                     345677888888888888899999999976 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.5
                     S CS
  Cytidylate_kin 178 e 178
                     e
      CTQ30343.1 139 E 139
                     1 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.8e-05     0.022       2      28 ..       8      34 ..       7      44 .. 0.87
   2 !    7.3   0.1    0.0065       3.7     121     180 ..      95     157 ..      85     168 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.8e-05
                EEEESTTSSHHHHHHHHHCCSTCEEEE CS
         dNK  2 vveGnIgaGKstlvklLskklgvkvfe 28
                 + G++gaGKst+  +L+++l+++++ 
  CTQ30343.1  8 FLVGPMGAGKSTIGRQLAQQLNMEFYD 34
                567******************998875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0065
                 CH-SEEEEEE--HHHHHHHHHHCTTCCCT...TS-HHHHHHHHHHHHHHHTSGGCS-EEEEET CS
         dNK 121 akpdlliYLkasletclerikkRgreeek...kieldYlekLhekyeewlkklnevpvlvidv 180
                 +   +++YL++++e+ l r ++ ++         +++ le+L  + ++ ++++  v++ + d 
  CTQ30343.1  95 SARGVVVYLETTIEKQLARTQRDKKRPLLqvdAPPREVLEALADERNPLYEEIADVTIRTDDQ 157
                 45779*************987644333332445567888888888888888877777766655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1     4e-06    0.0023      24      52 ..       4      48 ..       1     170 [. 0.71

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 4e-06
      AAA_16 24 pelvllsGesGvGKsslvrellralekd................g 52
                 ++++l+G+ G GKs++ r+l+++l+ +                g
  CTQ30343.1  4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEfydsdqeiekrtgadvG 48
                489********************9998833333333333333332 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.6e-06    0.0021       2      28 ..       8      34 ..       7      80 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.6e-06
                EEESSTTSSHHHHHHHHHHHHTHEEEE CS
         AAA  2 llyGppGtGKTllakavakelgvefle 28
                 l+Gp G GK+++ +++a++l++ef+ 
  CTQ30343.1  8 FLVGPMGAGKSTIGRQLAQQLNMEFYD 34
                79*******************999875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.7e-06    0.0016       5      66 ..       4      72 ..       1     127 [. 0.67

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.7e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee......erpevv....fvtlpsstsskdllrellralgl 66
                ++ ++++G+ G+GK+t  r+l++ql+ e +  +       +   +     +++ ++++ +d  +++ ++l++
  CTQ30343.1  4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDqeiekrTG---AdvgwVFDVEGEEGFRDREEKIINELTE 72
                7889********************97665555566644422...2233556666666666666666666665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.7e-06    0.0044      20      46 ..       5      31 ..       1      36 [. 0.86

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.7e-06
                EEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE 20 dvilLeGdLGaGKTtlvrglakalgve 46
                + i+L G++GaGK+t+ r+la++l++e
  CTQ30343.1  5 RNIFLVGPMGAGKSTIGRQLAQQLNME 31
                5699*******************9876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   1.5e-05    0.0084      10      37 ..       3      30 ..       1     170 [. 0.80

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.5e-05
                TTSEEEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 10 egekvaivGenGaGKStLlkllagllkp 37
                e + + +vG+ GaGKSt+ + la++l+ 
  CTQ30343.1  3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30
                567899**************99998875 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.3e-05    0.0075       5     113 ..       7     109 ..       3     123 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.3e-05
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT-EEEEE----SHHHHHHHHHHHHCHTEEE CS
  APS_kinase   5 vwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfseedRkenirrvaevaklladaglivlvafisPyreeReaarelleealkfi 103
                 ++l G +g+GKsti ++l+++L+ + +        + R+g   +  f+ e  +    r  ++ ++l+++  ivl++      ++Re+  +l +++   +
  CTQ30343.1   7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE--IEKRTGADVGWVFDVEGEEGFRDREEKIINELTEKQGIVLATGG-GSVKSRETRNRLSARG---V 99 
                 99*****************9998765443221..12344544555566666666666666677777777777665543.3344454444444433...5 PP

                 EEEEE--HHH CS
  APS_kinase 104 evfvdtplev 113
                  v+++t++e 
  CTQ30343.1 100 VVYLETTIEK 109
                 6666666654 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.6e-05    0.0095      31      62 ..       2      33 ..       1      45 [. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-05
       AAA_7 31 knkkpvllvGptGtGKtviikdllkkldkeky 62
                ++k++++lvGp G GK++i ++l ++l+ e y
  CTQ30343.1  2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33
                6789***********************97765 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.4   0.00011     0.065       1     125 [.      10     120 ..      10     141 .. 0.63
   2 ?   -0.4   0.0       2.5   1.4e+03      37      68 ..     140     169 ..     130     173 .] 0.69

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00011
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHH.HSSEEEEEE-SEEEETTEEEESSHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrgglakardemrklpleekkelqkeaaekiaeea.kkkgvlvdghprikeqagfldglpkevle 98 
                 +G+ G+GK+t+ ++l+++++ +++  +d   +e++++  a + + +   + e ++ ++++ ++ i+e   k++ vl +g  ++ ++++ + +l      
  CTQ30343.1  10 VGPMGAGKSTIGRQLAQQLNMEFYD-SD---QEIEKRTGA-DVGWV--FDVEGEEGFRDREEKIINELTeKQGIVLATGGGSV-KSRETRNRLS----- 95 
                 799********************99.55...444445442.22222..33333444444433333333323445566555555.3344333333..... PP

                 HH...SEEEEEE--HHHHHHHHHHHTTS CS
      AAA_17  99 elkp.daiilleadpeeilerrlkdrtr 125
                       ++++le+  e+ l+r ++d++r
  CTQ30343.1  96 ---ArGVVVYLETTIEKQLARTQRDKKR 120
                 ...3246888888888888888888877 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 2.5
                 TTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHH CS
      AAA_17  37 gglakardemrklpleekkelqkeaaekiaee 68 
                 +  ++  +e++++ ++ +++  k +a++i ++
  CTQ30343.1 140 R--NPLYEEIADVTIRTDDQSAKVVANQIIHM 169
                 3..34678888888888888888888888765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     4e-05     0.023       1      26 [.       6      31 ..       6      35 .. 0.91
   2 ?   -2.6   0.0       8.7     5e+03      86     112 ..      68      95 ..      64     113 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4e-05
                EEEEE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5  1 dvlLvGppGtgKselaerlaaalnre 26
                +++LvGp G gKs++ ++la+ ln e
  CTQ30343.1  6 NIFLVGPMGAGKSTIGRQLAQQLNME 31
                689******************99876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.7
                 HHHHHSSEEE..-SSSEEE---...... CS
       AAA_5  86 lslleerrllleeggelvkakndd.lle 112
                 + l e++ + l+ gg+ vk +++  +l+
  CTQ30343.1  68 NELTEKQGIVLATGGGSVKSRETRnRLS 95 
                 5566666666666676666666554444 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0     3e-05     0.017       2      36 ..       3      37 ..       2      56 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3e-05
  Ploopntkinase3  2 tarliylvGqPGaGkstlmaeltkgfdrskveqee 36
                    ++r i+lvG  GaGkst+  +l++ ++ + +++++
      CTQ30343.1  3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37
                    5799********************99998888655 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0     5e-05     0.029       1      33 [.       7      38 ..       7      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5e-05
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklkkkds 33
                  i+l+Gp g GKSt+ ++La++l  ++ ++++++
    CTQ30343.1  7 IFLVGPMGAGKSTIGRQLAQQLNMEF-YDSDQE 38
                  789*******************9877.333344 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.4e-05     0.043      87     114 ..       3      30 ..       1      37 [. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.4e-05
    AAA_PrkA  87 rkqilyllGPvggGksslverlkkllea 114
                 +k+ ++l+GP+g+Gks++  +l + l++
  CTQ30343.1   3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 
                 577789***************9998875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   0.00027      0.15      35     114 ..       6      88 ..       1     169 [. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00027
      AAA_25  35 lallaGapgtGKttlaldlalavatGkpwlg.....pvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagv.esl 114
                  + l+G+ g+GK+t+  +la  +    ++ +     + ++     ++ + E+ e ++r R +++  +l+++++  + ++ g+ +s+
  CTQ30343.1   6 NIFLVGPMGAGKSTIGRQLAQQLN--MEFYDsdqeiEKRTGADVGWVFDVEGEE-GFRDREEKIINELTEKQGIVLATGGGSvKSR 88 
                 5789***************99987..3444455533334455556777888888.9999999999999888888888765543333 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.1   0.00083      0.48       3      75 ..       4     104 ..       2     120 .. 0.64
   2 ?    2.9   0.0      0.19   1.1e+02      17      41 ..     105     128 ..     100     164 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00083
                 ---EEEE--TTSSHHHHHHHHHHHTT-................-EEEEEGGG---.......----THHHHHHHHHTTT-HHHHTTS............ CS
       AAA_2   3 iisilllgptgvGktelakalaellfv............kkekkliradaselle.......eeevehlvsrligappgyvgaeegG............ 70 
                 + +i l+gp+g Gk+ + ++la+ l++            +  +   ++              ++  e+++++l  +++g+v a  gG            
  CTQ30343.1   4 KRNIFLVGPMGAGKSTIGRQLAQQLNMefydsdqeiekrTGADVGWVF------DvegeegfRDREEKIINEL-TEKQGIVLATGGGsvksretrnrls 95 
                 67999**********************999877555444222222333......2233333334445555544.4556667666666677777777777 PP

                 ....EEEEE CS
       AAA_2  71 ....ivllD 75 
                     +v+l+
  CTQ30343.1  96 argvVVYLE 104
                 777777765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.19
                 HHHHHHHHHHTT-....-EEEEEGG CS
       AAA_2  17 telakalaellfvkkekkliradas 41 
                 t ++k+la++++ +k+++l  +da 
  CTQ30343.1 105 TTIEKQLARTQR-DKKRPLLQVDAP 128
                 7899********.9*********94 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00035       0.2       2      25 ..       7      31 ..       6      43 .. 0.86
   2 ?   -0.2   0.1       1.9   1.1e+03      17      32 ..      92     107 ..      76     143 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00035
      AAA_28  2 ivitGgestGKTtlleaLaar.gyp 25
                i ++G+ ++GK+t+ ++La++ +++
  CTQ30343.1  7 IFLVGPMGAGKSTIGRQLAQQlNME 31
                899****************986655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.9
      AAA_28  17 eaLaargypvvpEaar 32 
                 ++L+arg++v+ E+  
  CTQ30343.1  92 NRLSARGVVVYLETTI 107
                 5667777666655332 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   8.2e-05     0.047      40      96 ..      42      99 ..      22     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.2e-05
                  HHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESS.SSSHHHHHHHHHCT- CS
  His_biosynth 40 eegadelhvvDldaakegreanldlveeiaeevfipvqvGGG.Irsledveelleaga 96
                  ++gad   v D+++ +  r+++ ++++e++e+  i +  GGG ++s e+ ++l  +g+
    CTQ30343.1 42 RTGADVGWVFDVEGEEGFRDREEKIINELTEKQGIVLATGGGsVKSRETRNRLSARGV 99
                  68999999**********************************9999998888888876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00014     0.079      22      38 ..       4      20 ..       1      21 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00014
      AAA_29 22 kgatlltGpsGsGKSTl 38
                k +++l+Gp G+GKST+
  CTQ30343.1  4 KRNIFLVGPMGAGKSTI 20
                34799***********8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00017     0.096      99     127 ..       4      32 ..       1      45 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00017
                  TSEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelkt 127
                  ++ ++lvG+ G+GKSt+  +l+++l+++ 
   CTQ30343.1   4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF 32 
                  567899****************9988775 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00018      0.11       2      36 ..       5      41 ..       4      47 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00018
   PduV-EutP  2 kkilliGkvgsGKttLtqalkg.eelk.Ykktqaief 36
                ++i+l+G++g+GK t+ ++l +  +++ Y++ q ie 
  CTQ30343.1  5 RNIFLVGPMGAGKSTIGRQLAQqLNMEfYDSDQEIEK 41
                689*************999977346654788888875 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00016     0.095       2      47 ..       4      48 ..       3      94 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00016
      AAA_24  2 klkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdie 47
                k++i+++Gp g+GK+t+ ++l  + l + + ++ ++++ + + d+ 
  CTQ30343.1  4 KRNIFLVGPMGAGKSTIGRQL-AQQLNMEFYDSDQEIEKRTGADVG 48
                789******************.888888888888788777777664 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00021      0.12      22      48 ..       4      30 ..       1     106 [. 0.83
   2 ?   -3.1   0.0       7.4   4.3e+03     121     145 ..     131     160 ..     129     167 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00021
  Mg_chelatase 22 gHnlllvGppGsGKtmlakrlpsllpp 48
                  + n++lvGp G+GK+ + ++l++ l  
    CTQ30343.1  4 KRNIFLVGPMGAGKSTIGRQLAQQLNM 30
                  679***************999887654 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7.4
  Mg_chelatase 121 kvlevL...RePl..edgevtisrakakve 145
                   +vle+L   R+Pl  e   vti+  +++++
    CTQ30343.1 131 EVLEALadeRNPLyeEIADVTIRTDDQSAK 160
                   666666555778844445666666666555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00069       0.4       2      23 ..       7      29 ..       6     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00069
                EEEEESTTSSHHHHHHHHHTS.T CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge.k 23
                + +vG   +GKSt+ ++l ++ +
  CTQ30343.1  7 IFLVGPMGAGKSTIGRQLAQQlN 29
                889**************998643 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00019      0.11       3      39 ..       4      41 ..       2     128 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
                EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH.HH CS
    GTP_EFTU  3 irnigiighvDhGKtTLtdrLlyktgaiskkgeka.ee 39
                 rni ++g + +GK+T+  +L +++++   ++ ++ e+
  CTQ30343.1  4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEiEK 41
                59***********************9998877766433 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00034       0.2      46      70 ..       3      27 ..       1      36 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00034
   IstB_IS21 46 kkenivllGpsGvGKshlaialgve 70
                +k ni l+Gp G+GKs +   l+++
  CTQ30343.1  3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27
                789*************999999887 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0006      0.35       3      27 ..       5      29 ..       3      78 .. 0.79
   2 ?   -1.3   0.0       3.7   2.1e+03      81     119 ..      65     100 ..      59     111 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0006
      AAA_14  3 kilvitGaRrvGKTtllkqlikell 27
                + ++++G+  +GK+t+ +ql+++l 
  CTQ30343.1  5 RNIFLVGPMGAGKSTIGRQLAQQLN 29
                67899****************8877 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.7
      AAA_14  81 kalkslvdegknldvivtGSnskllskeiatslagrvae 119
                 k++++l +++  + v++tG  s   s+e++++l+ r+ +
  CTQ30343.1  65 KIINELTEKQ--GIVLATGGGSVK-SRETRNRLSARGVV 100
                 5666666655..677788776644.46677777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 1336.74
//
Query:       CTQ30344.1  [L=414]
Description: fimbrial transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-46  156.4   0.6    1.1e-45  155.4   0.6    1.5  1  Secretin    Bacterial type II and III secretion system protei
    3.5e-08   33.7   0.3    1.5e-06   28.5   0.0    3.1  2  Secretin_N  Bacterial type II/III secretion system short doma
    7.9e-08   32.0   0.1    6.2e-05   22.7   0.0    2.7  2  STN         Secretin and TonB N terminus short domain


Domain annotation for each model (and alignments):
>> Secretin  Bacterial type II and III secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   0.6   1.8e-49   1.1e-45       1     169 [.     252     411 ..     252     412 .. 0.93

  Alignments for each domain:
  == domain 1  score: 155.4 bits;  conditional E-value: 1.8e-49
    Secretin   1 aleqegkakvlstPklltldneeAeievgqevpvqvtsetgsstgatttatevefkevglsLkvtPqvtedgsirlkidvevssiassqavtaegnsvp 99 
                 ale++++++++++P+ll++  ++A+i++g+e+p+qv+s ++       +at+vefke+ l ++vtP+v ++g++rlk++++ +++ +    ++e+++  
  CTQ30344.1 252 ALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGES-------GATSVEFKEAVLGMEVTPTVLQQGRVRLKLRISENTPGQVL--KQENGEAL 341
                 799********************************443332.......3456*********************************9854..45789999 PP

    Secretin 100 tisrrelkttvrvkdgetlviGGliqdeeseseskvPlLgdiPllGaLFksttkskektellifitPriv 169
                 +i+++e++t v+v++getl++GG++++++++ ++ vPlLgdiP+lG+LF+++ k++e++el++fitPri+
  CTQ30344.1 342 AIDKQEIETLVEVRSGETLALGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 411
                 9********************************************************************7 PP

>> Secretin_N  Bacterial type II/III secretion system short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   2.5e-10   1.5e-06       3      80 ..     123     180 ..      13     182 .. 0.85
   2 ?    1.3   0.0     0.078   4.6e+02      37      70 ..     239     272 ..     205     275 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 2.5e-10
                 EEE-SSS-HHHHHHHHHHHCCTT.............SSTT-TTSEEEEETTTTEEEEEECHHHHHHHHHHHHHHCTSS CS
  Secretin_N   3 vfpLkyasaadlasiLrellgggggesassgassqsgallgkggrvvadprtNsllvrgspervarirqlikqLDvpr 80 
                  ++L+ a+a++la+   +ll                    + +g + ad rtN ll+r++++ ++ ++ +++++D p 
  CTQ30344.1 123 SVTLHFADAEELAKSGGKLL--------------------SARGHLMADKRTNRLLIRDDARHLPALKAWAQEMDLPV 180
                 46677777777777777777....................9**********************************986 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.078
                 ..SSTT-TTSEEEEETTTTEEEEEECHHHHHHHH CS
  Secretin_N  37 qsgallgkggrvvadprtNsllvrgspervarir 70 
                 ++ +++   + ++a +r  ++ + +sp+ +a ++
  CTQ30344.1 239 GKINGRLLELELSALERKQQVEIIASPRLLASHM 272
                 5556667778899**************9988765 PP

>> STN  Secretin and TonB N terminus short domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0012       7.2       8      35 ..      18      45 ..      13      47 .. 0.87
   2 !   22.7   0.0     1e-08   6.2e-05       2      47 ..      49      91 ..      48      92 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0012
         STN  8 elvrgnqtvslnignvtideaLdeLLkg 35
                + +r+ + vsl i +++++++L+ L  +
  CTQ30344.1 18 PAARNDKPVSLVIDDAPVAQVLQALAEM 45
                6789999****************99766 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 1e-08
         STN  2 nfiydselvrgnqtvslnignvtideaLdeLLkgtgLqykitgnti 47
                n+++  ++v+g  t+sl++  v++ +aL+ + +  gL+ +++g +i
  CTQ30344.1 49 NLVVA-PDVSG--TLSLRLQKVPWSQALRAVADSAGLSLQQQGTII 91
                77888.9****..*****************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 3411.26
//
Query:       CTQ30345.1  [L=127]
Description: hypothetical protein CH1034_350041 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-36  123.4   0.6    4.8e-36  123.2   0.6    1.0  1  HofP      DNA utilization proteins HofP
  ------ inclusion threshold ------
      0.021   14.7   0.1      0.036   13.9   0.1    1.3  1  DR2241    DR2241 stabilising domain


Domain annotation for each model (and alignments):
>> HofP  DNA utilization proteins HofP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.6   5.4e-40   4.8e-36       2     110 ..       4     112 ..       3     122 .. 0.96

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 5.4e-40
        HofP   2 krwlllmlalllltgmrdPfkPPedrcriaelslwryqGvvkkGerltgilkdsqkkwrrveegqvlenGwtivrltadkltlktGkgcePsqlvwlrq 100
                 krw++l l l ll + rdPf+P ed cr a+ls+wry+G+v     +tg l+d++ kwrrv+ ++ l++Gw+++rlta +l + t +gceP+ ++w+r+
  CTQ30345.1   4 KRWIFLWLPLSLLAAERDPFQPVEDPCRTAQLSQWRYGGAVGDEAGWTGFLQDGNGKWRRVRMDEQLPTGWRVSRLTAGELDIVTSSGCEPPAWRWQRE 102
                 89************************************************************************************************* PP

        HofP 101 geenealdsr 110
                 g++++a+d  
  CTQ30345.1 103 GKQHDAMDKP 112
                 *******975 PP

>> DR2241  DR2241 stabilising domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1     4e-06     0.036      63      92 ..      55      84 ..      51      90 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4e-06
                B-TTS-B-SSTTBS---SSEE.EEE-TTTH CS
      DR2241 63 ldeegryRPlktaptlprGWrfavldeadl 92
                +d +g++R ++   +lp+GWr++ l++ +l
  CTQ30345.1 55 QDGNGKWRRVRMDEQLPTGWRVSRLTAGEL 84
                5889********************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1037.30
//
Query:       CTQ30346.1  [L=142]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1142.54
//
Query:       CTQ30347.1  [L=177]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00029   20.9   0.0    0.00057   20.0   0.0    1.6  1  PilN         Fimbrial assembly protein (PilN)
     0.0055   15.3   0.0     0.0076   14.8   0.0    1.2  1  Gyro_capsid  Gyrovirus capsid protein (VP1)


Domain annotation for each model (and alignments):
>> PilN  Fimbrial assembly protein (PilN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   6.4e-08   0.00057       3      51 ..      99     147 ..      97     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.4e-08
        PilN   3 ldeLsravPkgvwltsisqegnqltitGsAvsndeVaefmrnLegspff 51 
                 l++L+  +P + wlt+++ +g  lt++G A + +++ +    L +   f
  CTQ30347.1  99 LQALAADLPAQAWLTRLEYQGVLLTLDGLALNLQALTSVEAALTRVAGF 147
                 9*****************************9998888777777665555 PP

>> Gyro_capsid  Gyrovirus capsid protein (VP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   8.5e-07    0.0076      25      87 ..      71     132 ..      61     148 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.5e-07
  Gyro_capsid  25 rlrrrykfrhrrrqryrrrafrkafhnprpgtysvrlpnpqstmtirfqgviflteglilpkn 87 
                   +r  ++ ++r+rq+y+rr+   a  +pr  + +  lp       + +qgv++  +gl l  +
   CTQ30347.1  71 AMREAWQQHQRQRQQYQRRSAIAA-WQPRLQALAADLPAQAWLTRLEYQGVLLTLDGLALNLQ 132
                  567788888999*******98766.58***********9999999*************98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1519  (0.0847231); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1334.13
//
Query:       CTQ30348.1  [L=266]
Description: putative pilus assembly protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-05   24.7   0.0    0.00031   19.9   0.0    2.0  2  PilM_2    Type IV pilus assembly protein PilM;
  ------ inclusion threshold ------
      0.011   15.1   0.9      0.015   14.6   0.9    1.2  1  T2SSL     Type II secretion system (T2SS), protein L


Domain annotation for each model (and alignments):
>> PilM_2  Type IV pilus assembly protein PilM;
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.4e-08   0.00031       1     114 [.       9     122 ..       9     145 .. 0.91
   2 !    2.9   0.0    0.0051        46     316     337 ..     237     257 ..     206     259 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.4e-08
      PilM_2   1 GiDissssvklvelskkkgslrvealaieplekdavvdreikdieavsealkrvvkklktrvkevaiavpgsavitkkialda.dLteeeleaqvelea 98 
                 G+ i + s+ +v+l +++ ++ + +   +pl+ + v ++ ++d+ a++  l    ++l+++ ++v ia p+  +++k+   ++ +L+e+e  + v +  
  CTQ30348.1   9 GMHIQQDSIAIVALLHERSHWALRRWWRIPLPPGLVRQGMVADVSALGSRLAAWRRELPAQ-HQVSIAFPAVRTLQKRLPYPQfALREREQATWVASAM 106
                 78899**********************************************9888888765.78***************999768************99 PP

      PilM_2  99 dqliPfpldevslDFe 114
                  q +  p     +D+ 
  CTQ30348.1 107 SQQLAMPASALCIDYA 122
                 9999999999999994 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.0051
      PilM_2 316 kvrakklardapsylvAcGLAl 337
                 + r+  l +d+  y++A+GLAl
  CTQ30348.1 237 R-RQPPLPADGDRYAIALGLAL 257
                 4.6788999************9 PP

>> T2SSL  Type II secretion system (T2SS), protein L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.9   1.7e-06     0.015      41     155 ..      64     187 ..      43     219 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-06
                 HHHHTTSEEEEEE-GGGSEEEEEE--TT-GGGHHHH..HHHHHGGGSSSSGGGEEEEEEEE-SS.EEEEEEEEHHHHHHHHHHHHHTT-EEEEEEEGGG CS
       T2SSL  41 aeypaadrvvlllPaedvllvsvslPpqalrqlrqa..LpflvEdqlaqDvdqlHiavlpkead.taavvavdrawlrrvLdslagaglrvkrllPdal 136
                 +e+pa+++v +  Pa   l   +  P+ alr+ +qa  ++ ++ +qla  + +l i   p  +d   +v a++r  ++   + +    lrv++++Pda 
  CTQ30348.1  64 RELPAQHQVSIAFPAVRTLQKRLPYPQFALREREQAtwVASAMSQQLAMPASALCIDYAPTSRDdGWQVTAAQRLDINVLRELAGRLRLRVAAIVPDAS 162
                 689**************************99998875589999*****************9998678**********9877788889************ PP

                 GS....--..-SSSEEEEEETTEEE CS
       T2SSL 137 aL....Pl..padvwavlnadeewl 155
                 aL    P+   ad+  + + +++wl
  CTQ30348.1 163 ALgaffPWmtAADQGLAWRDEKHWL 187
                 9933334443333333333333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2170.48
//
Query:       CTQ30349.1  [L=852]
Description: fused penicillin-binding protein 1a: murein transglycosylase; murein transpeptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-65  219.2   0.0    5.7e-65  218.1   0.0    1.6  1  Transgly        Transglycosylase
    2.2e-29  102.5   1.6    4.9e-29  101.3   1.6    1.7  1  PCB_OB          Penicillin-binding protein OB-like domain
      1e-24   87.3   0.3    4.3e-23   82.0   0.0    2.7  2  Transpeptidase  Penicillin binding protein transpeptidase dom
  ------ inclusion threshold ------
      0.065   13.9   0.0       0.16   12.6   0.0    1.7  1  DUF3502         Domain of unknown function (DUF3502)


Domain annotation for each model (and alignments):
>> Transgly  Transglycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.1   0.0   1.3e-68   5.7e-65       2     177 ..      55     229 ..      54     230 .. 0.98

  Alignments for each domain:
  == domain 1  score: 218.1 bits;  conditional E-value: 1.3e-68
    Transgly   2 gellaeleeeenrelvkleeippalkkavvaiEDrrFyehkGvdlkgiarAvlknlksgkssqGgSTitqQlvknlflseertlerKlkeavlAlklek 100
                 gel+a++  e++r  v+l++ipp+l+ka++a+ED+rFyeh+Gvd+ gi+rA+   + sg+ sqG+STitqQl++n+fls e+tl rK+kea+lA+++e+
  CTQ30349.1  55 GELIAQY-GEKRRIPVTLQQIPPELVKAFIATEDSRFYEHHGVDPVGIFRAASVAMFSGHASQGASTITQQLARNFFLSPEKTLMRKIKEAFLAIRIEQ 152
                 7899999.59***************************************************************************************** PP

    Transgly 101 klsKdeILeaYlNsvylgrevyGieaAarayFgkdakdLtlaeaalLagllkaPsrynplenpeeakkrrkvvlerm 177
                  l+KdeILe+YlN++ylg ++yG++aAa++yFgk++++Ltl+e+a++agl+kaPs++npl + ++a++rr+vvl+rm
  CTQ30349.1 153 LLNKDEILELYLNKIYLGYRAYGVGAAAQVYFGKPIDQLTLSEMAVIAGLPKAPSTFNPLYSMDRATARRNVVLSRM 229
                 ****************************************************************************9 PP

>> PCB_OB  Penicillin-binding protein OB-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   1.6   1.1e-32   4.9e-29       1     112 []     316     425 ..     316     425 .. 1.00

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 1.1e-32
                 B---SEE-TT-SHCT..HHHHHHHCCTSSTCTTEEEEEEEEEETTEEEEEETTS-EEEEEGGGGTTTGCCTTTS-B---CCCHCCC--TTEEEEEEE-T CS
      PCB_OB   1 yRGpeakldlealaeadeealeealkklpdsgelrpAvVlsvseksarvglrdgetgtipleglkwarkvlsdkkqgkapksasdvlkpGdvvlvrkee 99 
                 yRGp + l++ ++++++++++ + lk ++ +g+l pAvV+s+++++a + l++g+ + +++eg++war+++sd++qg++p++++dv+++G++++vrk++
  CTQ30349.1 316 YRGPASVLWKVGETPWETKKIVDSLKRQSGYGPLFPAVVTSANAQEAVALLANGDSVSLTMEGVRWARRFISDTQQGATPRKVNDVVQAGQQIWVRKVG 414
                 9************************************************************************************************** PP

                 T.S-EEEE---SS CS
      PCB_OB 100 degewrLrQvPev 112
                 d  +w+L+Q+P+v
  CTQ30349.1 415 D--SWWLSQLPDV 425
                 *..********98 PP

>> Transpeptidase  Penicillin binding protein transpeptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   9.6e-27   4.3e-23       3     197 ..     429     603 ..     427     611 .. 0.86
   2 ?    2.1   0.2     0.021        92     240     273 ..     712     734 ..     693     764 .. 0.77

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 9.6e-27
                     EEEEETTT-BEEEEEEESE-TTTHHCCTCGCCSTHHHH--BB-GGGGHHHHHHHHHHTTSSTTSEEEEETCCEETTSS.ECTCCCC-...SSSSE CS
  Transpeptidase   3 avvldaktgevlamaskpsydpnakvgkneplanravqsqyePGStfKvvtaaaaleagvikpdetlddsggkiqggqsikdweqdn...kgseg 94 
                      v +++++g+++a+++  +++++++        nra+q   + GS +K+++  aa+++g ++  + l+d ++   +  +  dw  +n   +  ++
      CTQ30349.1 429 LVSINPQNGAIIALVGGFDFNQSKF--------NRATQALRQVGSNIKPFLYTAAMDKG-LTLASMLNDVPISRWDAGAGSDWRPKNsppQYAGP 514
                     6789*************98877777........88************************.8888999999988888888999999999989999* PP

                     EEHHHHHHTT-HHHHHHHHHHH-HHHHHHHHHHTTTTS-SSSSSTT-B--B--SSHHHHHHHHHTTTSBB-HHHHHHHHHHHHTTTEEE--BSEE CS
  Transpeptidase  95 itlrealekSsntyfvklaqklgadklrkylkkfglGnktgidlpgesaGvptrkwlegatisfgiGltvtplqlaqayaaiangGklvkPhlvk 189
                     i lr+ l +S+n+++v+  +++g d++ +yl++fg+ ++  +   +          l++         + tplq+a+ y+++angG lv P +++
      CTQ30349.1 515 IRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLA--------LGS--------ASFTPLQVARGYSVMANGGFLVNPFFIS 593
                     *************************************93332222222........333........69************************** PP

                     EEEECTT..E CS
  Transpeptidase 190 aivdpdg..v 197
                     +i++++g   
      CTQ30349.1 594 KIENDQGgvL 603
                     **99887642 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.021
                     S--EEEEEEEEECSSSTTSEEEEEEEEEEEEEES CS
  Transpeptidase 240 ykvagKTGTAevagkkgngkkegakiswfvgyap 273
                      ++ gKTGT++  ++           +wf gy p
      CTQ30349.1 712 HDIGGKTGTTNSSKD-----------AWFSGYGP 734
                     4899*****998862...........38888766 PP

>> DUF3502  Domain of unknown function (DUF3502)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.6e-05      0.16      38     106 ..     416     486 ..     376     490 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.6e-05
     DUF3502  38 yllegepedkwekvkefnee..akaspalgFtfDsspvkteiaalsnvveeykkaletGlvDpeetlpkfn 106
                   + ++ +d   ++ + n +  a+   + gF f++s+     +al++v ++ k+ l+t ++D   tl+ ++
  CTQ30349.1 416 SWWLSQLPDVNSALVSINPQngAIIALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASML 486
                 34555555555554444443235558899********************************9888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.38
# Mc/sec: 6675.96
//
Query:       CTQ30350.1  [L=188]
Description: ADP-ribose diphosphatase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-13   51.2   0.0    1.8e-13   50.7   0.0    1.3  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   9.8e-18   1.8e-13       3     115 ..      49     157 ..      47     176 .. 0.72

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 9.8e-18
                 EEEEEEE.EEETTSEEEEEEES..SSSTTT...EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSG CS
       NUDIX   3 rravgvv.llnekgevLlvrrs..kkpfpg...WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleevege 95 
                 r av +v + +++  ++l+r++  +   ++     + +G ++pgEt+ eAA REl+EE+G+ a+ l++l +l    +y  ++++    ++v ++   + 
  CTQ30350.1  49 REAVMIVpIVDDH--IILIREYavG---TEsyeLGFSKGLIDPGETVDEAANRELKEEVGYGANKLTFLKKLSMAPSYFSSKMN----IMVAEDLYPES 138
                 7799999888888..*******542...3332256**************************99*******88776666655554....45556666666 PP

                 CSSTSTTTEEEEEEEEHHHH CS
       NUDIX  96 lepndenevsevrwvpleel 115
                 l+ ++++ + +vrw pl++l
  CTQ30350.1 139 LPGDEPEPLPQVRW-PLAQL 157
                 66666666777764.55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1691.50
//
Query:       CTQ30351.1  [L=709]
Description: intracellular growth attenuator protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
          0 1142.3   0.0          0 1142.1   0.0    1.0  1  IgaA      Intracellular growth attenuator protein IgaA
  ------ inclusion threshold ------
      0.011   15.9  12.3        1.2    9.3   0.2    4.3  4  DUF4381   Domain of unknown function (DUF4381)
       0.09   11.8   0.0       0.17   10.8   0.0    1.4  1  ANTH      ANTH domain


Domain annotation for each model (and alignments):
>> IgaA  Intracellular growth attenuator protein IgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1142.1   0.0         0         0       1     702 [.       1     703 [.       1     704 [. 0.99

  Alignments for each domain:
  == domain 1  score: 1142.1 bits;  conditional E-value: 0
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXX--SS-EEEE--HHHHHHHHHHHHHHHH--------SS----------GGGGEEEEEEE-EEEE CS
        IgaA   1 mstiviilailliclivaglllllklrrrkklakllslakattrkltaeerkaiekyleelekakqttalseassaeekltltaksdnvyavtraitRy 99 
                 m t++i+l++llic++++g+++++++rrr +l+ l+++++attr+l a+er+aieky++el++a+q+  +s a+sa+ +l+l+++sd+vyavtraitRy
  CTQ30351.1   1 MGTFLIFLTALLICVLLIGWWYRAHARRR-RLPLLHAFSDATTRQLPADERQAIEKYVAELSHAQQV-PASGATSAPVALALNEQSDTVYAVTRAITRY 97 
                 889********************999998.7889**************************9997765.55889999*********************** PP

                 --S-SSSSS-EEEETTEEEB--TTSTTT--SSEEEEEEE-SSSEEEEEETTEETT-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IgaA 100 glstdepnkWrYyldsvevhlPplleqyiaeenevelikteslPlvislnGhslkeeveeaaaaalakassknasirkeeseqvellkiRketkeeyal 198
                 g++td+pnkWrY+ldsvevhlPp++eq+i++en+veli t+slPlvi+lnGhsl+++ +ea+++al++as+++asir eeseqvel++iR+et+ee+al
  CTQ30351.1  98 GITTDAPNKWRYFLDSVEVHLPPFWEQHINDENSVELIPTDSLPLVITLNGHSLSDYRQEAQSYALERASATQASIRGEESEQVELRQIRRETPEEHAL 196
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IgaA 199 srseglreallivlallllflallsPavllpWlvlaaalllavglwlllrplskkelreihClrGtpkrwGLfgesdqeqisnisLgiiDLiYPahWqP 297
                 +r++glrea+liv+++l+++++l+ Pav++pWlv+a++llla+glw +++p+++++lreihClrG+pkrwGLfge+dqeqi+nisLgiiDLiYP+hWqP
  CTQ30351.1 197 NRPDGLREAILIVASFLFFYFSLIGPAVFTPWLVAAGLLLLAAGLWGIYAPPRRAALREIHCLRGVPKRWGLFGENDQEQINNISLGIIDLIYPRHWQP 295
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IgaA 298 yiaqdlgkktdidiYlnrqvvrqGryLsLhdevknfPlqrwgknlvlavgsllvllllllyvplslplklslaWlkgaetvevtsveelekaklrvGDt 396
                 +iaqdlg++tdidiYlnr+v rqGryLsLhdevknfPlq w +++++a+g+l+v+++l+++vpl++p+k++l+Wlkga+t+e+t+v++leka++r+GDt
  CTQ30351.1 296 WIAQDLGQQTDIDIYLNRHVARQGRYLSLHDEVKNFPLQYWLRSAIIAAGALVVVIMLWASVPLNMPFKFTLSWLKGAQTIEATTVSQLEKAHVRIGDT 394
                 *************************************************************************************************** PP

                 XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IgaA 397 lkvkgtGmCyv..ppnlsskeksafapfDCsaiyWnnasplPlPeseiiekaaaLletvnkqLhpeee.eekvnpqLasaiqksGmiLlddfsdivlkt 492
                 l+++gtGmC++  p+++s+ke+s+f+pfDCs+i+Wn+a plPlPes+i++ka+aL+++v++qLhpe++ +++v+p L+saiqksGm+Llddf div+kt
  CTQ30351.1 395 LRLTGTGMCNIrtPGSWSAKEDSPFLPFDCSQIVWNDAPPLPLPESDIVSKATALMQSVQRQLHPETDdDSRVSPALRSAIQKSGMVLLDDFGDIVQKT 493
                 ***********9899****************************************************9899**************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IgaA 493 qeLCekeedCvRLknaLvnLgnakdWetlvkraksGkLegvnvlLrpvsaeaLekLvntatssfivreieraaeaLnsPpPGGfliisDegkqlveqpa 591
                 ++LC++++dC+RLknaLvnLgn+++Wetl+kra++GkL+gvnvlLrpvsae+Le+Lv+t+t++f++re++raa+aLnsP+PGGfli+sDeg+ lv+qp+
  CTQ30351.1 494 NDLCSAKDDCLRLKNALVNLGNTRNWETLTKRATAGKLDGVNVLLRPVSAESLENLVTTSTAPFVIRETSRAAQALNSPAPGGFLIASDEGSVLVNQPW 592
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        IgaA 592 pavsledlealeqWkelqrlselllhtpfeaeGiitelsvDanGtrhiaLhsepdavtlwrylgttlLllvlllllilnavlllrrlrknrqRleeiqr 690
                 pavsl+d++a+eqW el+rl+++l+htpf+aeGi+t+l +DanGt+hi+Lh++pd+++lwrylg tlLll ++++++++av++lrr++++rqR+eeiq+
  CTQ30351.1 593 PAVSLYDYPAHEQWGELRRLAGMLMHTPFHAEGIVTNLFTDANGTQHINLHRIPDRSGLWRYLGITLLLLSMVGCMAYHAVQALRRYQRHRQRMEEIQK 691
                 *************************************************************************************************** PP

                 XXXXXXXXXXXX CS
        IgaA 691 YYdkcfnkellp 702
                 YY++c+n+ llp
  CTQ30351.1 692 YYESCLNPVLLP 703
                 *******99877 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2   0.00021       1.2      22      60 ..       4      44 ..       1     113 [. 0.63
   2 ?    7.3   0.1   0.00087       5.2      21      59 ..     227     260 ..     220     280 .. 0.69
   3 ?   -0.4   0.7      0.21   1.3e+03      10      39 ..     326     354 ..     322     378 .. 0.68
   4 ?    4.7   0.0    0.0057        34      14      57 ..     651     691 ..     641     704 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00021
     DUF4381 22 wlllaalllllllvlalwllrrrkrnrreAlreLaalr..a 60
                 l+ + +ll+++l++++w++ + +r+r   l+++ +++  +
  CTQ30351.1  4 FLIFLTALLICVLLIGWWYRAHARRRRLPLLHAFSDATtrQ 44
                45554555555555555544433333333444444444321 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00087
     DUF4381  21 wwlllaalllllllvlalwllrrrkrnrreAlreLaalr 59 
                  wl++a+lll   l+++lw +  +  +rr+Alre++ lr
  CTQ30351.1 227 PWLVAAGLLL---LAAGLWGI--YAPPRRAALREIHCLR 260
                 4888855444...44444444..455699****999887 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.21
     DUF4381  10 epvswwPpapGwwlllaalll..llllvlalw 39 
                 ++v+ +P+ +  wl   a+++  +l++v++lw
  CTQ30351.1 326 DEVKNFPLQY--WLRS-AIIAagALVVVIMLW 354
                 5677778775..5555.334413444444444 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.0057
     DUF4381  14 wwPpapGwwlllaalllllllvlalwllrrrkrnrreAlreLaa 57 
                 +w    G  lll + ++ ++++ a+ +lrr++r  r+ ++e+++
  CTQ30351.1 651 LWRY-LGITLLL-LSMVGCMAYHAVQALRRYQR-HRQRMEEIQK 691
                 3333.3444444.23334566666666667776.5666666665 PP

>> ANTH  ANTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.9e-05      0.17     210     247 ..     661     697 ..     647     704 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.9e-05
                 HHHHHCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        ANTH 210 LlekffelskheadkaldiykrfskqfeelkeFyevck 247
                 Ll+++  +   +a++al+ y+r ++++ee++++ye c 
  CTQ30351.1 661 LLSMVGCM-AYHAVQALRRYQRHRQRMEEIQKYYESCL 697
                 44444444.4589************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 5224.25
//
Query:       CTQ30352.1  [L=227]
Description: putative hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-10   40.7   0.0      1e-09   38.7   0.0    1.9  1  HAD_2        Haloacid dehalogenase-like hydrolase
    2.3e-09   37.9   0.5    1.4e-06   28.8   0.0    2.1  2  Hydrolase    haloacid dehalogenase-like hydrolase
    1.6e-07   31.9   0.5    3.1e-07   31.0   0.4    1.5  1  HAD          haloacid dehalogenase-like hydrolase
     0.0011   19.0   0.5      0.014   15.5   0.5    2.5  2  Hydrolase_6  Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   2.3e-13     1e-09       1     176 [.      13     190 ..      13     191 .. 0.72

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 2.3e-13
       HAD_2   1 iiFDlDgTlldteeliiqafnelleey.....gls.elseeelrkliglslrellrklgeseeeeekieellrkyneekkk.kevkpydgvkelLeeLk 92 
                 ++ D+DgTlld     + ++++l+ e      gl+ +  +e +r+ ++   + l ++  +    e +    l++     ++    ++ ++   +L+ Lk
  CTQ30352.1  13 VLLDMDGTLLDLAFDNY-FWQTLVPETwgaarGLNlQEAKEAMRQEYHAVQHTLNWYCLDYWS-ERLG---LDICAMTSEQgPRATLREDTVPFLDALK 106
                 57899999998643333.333333333333333333334444444444444444444444322.2222...222222222334799************* PP

       HAD_2  93 eagyklgivTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                 + g +  + T+ +  ++  kl+++g++ ++d  +++++++ +K d+++ +++ e+++l+++++++v Ds   + aa+++gi+++
  CTQ30352.1 107 ACGKRRILLTNAHPHNLAVKLKHTGLDAHLDLLLSTHTFGYPKEDQRLWRAVAEETGLEAHKTLFVDDSEAILDAAREFGIRYC 190
                 *********************************************************************************975 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.5   0.00084       3.8       1      16 [.      10      25 ..      10      65 .. 0.71
   2 !   28.8   0.0   3.1e-10   1.4e-06     118     210 .]      93     186 ..      27     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00084
                SSEEEEESBTTTBCHH CS
                xxxxxxxxxxxxxxxx RF
   Hydrolase  1 iktvvfDkdGTLttge 16
                ++tv++D+dGTL++  
  CTQ30352.1 10 VDTVLLDMDGTLLDLA 25
                68**********9755 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 3.1e-10
                 HBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 118 kvkpeaaeavasLkaagievvlltgdnpetaeraanqlG.ddyfdaviasdietvakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 +++++++ ++ +Lka g + +llt+ +p++    +++ G d ++d  +++ + +  k +++  +a+++e + + +++++V+D+   + a+++ g
  CTQ30352.1  93 TLREDTVPFLDALKACGKRRILLTNAHPHNLAVKLKHTGlDAHLDLLLSTHTFGYPKEDQRLWRAVAEETGLEAHKTLFVDDSEAILDAAREFG 186
                 5889999********************************999999999999999*****************************99999988765 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.4   6.9e-11   3.1e-07       1     141 [.      13     143 ..      13     183 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 6.9e-11
         HAD   1 alfDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallagls.eelaaelerfvaevirpk.lldpgalellaah 97 
                 +l+D+DgTLld   + ++++    +  p++w a+r   l+   +e++r+++ ++++ l+ +  ++  e+l  +++++  +++ p+ +l+++ + +l+a 
  CTQ30352.1  13 VLLDMDGTLLDLAFDNYFWQ----TLVPETWGAARGLNLQEA-KEAMRQEYHAVQHTLNWYCLDYWsERLGLDICAMT-SEQGPRaTLREDTVPFLDAL 105
                 789*********66667777....444567888888855555.899999999999999888888888***********.6666665799********99 PP

         HAD  98 raaGdrvvvvSgglrplvepllaelgadevlatelevddrltge 141
                 +a G r +++++++ +++  +l++ g    l+ +l+    l+ +
  CTQ30352.1 106 KACGKRRILLTNAHPHNLAVKLKHTG----LDAHLDL--LLSTH 143
                 9*************************....5552221..33333 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.5   3.1e-06     0.014       3      69 ..      15     145 ..      13     188 .. 0.67
   2 ?   -1.4   0.0      0.56   2.5e+03      17      38 ..     173     195 ..     154     208 .. 0.64

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.1e-06
                  EESTTTSE...................................................................ETTEE-TTHHHHHHHHHHTT-EE CS
  Hydrolase_6   3 fDidGvLw...................................................................rgdkaipgaaealnalraagkpv 33 
                  +D+dG+L+                                                                      ++ +  + +l+al+a gk+ 
   CTQ30352.1  15 LDMDGTLLdlafdnyfwqtlvpetwgaarglnlqeakeamrqeyhavqhtlnwycldywserlgldicamtseqgPRATLREDTVPFLDALKACGKRR 112
                  555555555555555555555555555555555555555555555555555555555555555555555555522233455777889*********** PP

                  EEEE---SS-HHHHHHHHHHTT----GGGEEEHHHH CS
  Hydrolase_6  34 vllTNnsskseeeyakkleklgvditeeqvvtsata 69 
                  +llTN     + ++a kl++ g+d++ + +++++t 
   CTQ30352.1 113 ILLTNAH---PHNLAVKLKHTGLDAHLDLLLSTHTF 145
                  *****65...678************99999998885 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.56
                  TTHHHHHHHHHHTT-EEEE.EE- CS
  Hydrolase_6  17 pgaaealnalraagkpvvl.lTN 38 
                  + ++ +l+a r+ g++++l +TN
   CTQ30352.1 173 DDSEAILDAAREFGIRYCLgITN 195
                  45556667777777776665666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1632.67
//
Query:       CTQ30353.1  [L=133]
Description: ribosome-associated heat shock protein Hsp15 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-13   48.8   0.0    6.4e-13   48.2   0.0    1.3  1  S4        S4 domain
  ------ inclusion threshold ------
      0.023   14.5   0.0       0.08   12.8   0.0    1.9  2  S4_2      S4 domain


Domain annotation for each model (and alignments):
>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   7.1e-17   6.4e-13       1      45 [.       9      52 ..       9      55 .. 0.94

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 7.1e-17
                EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TT CS
          S4  1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpg 45
                +RLdk+l+++++ ++r  Ar++Ie+G+V+ NG++ k p+ +V+  
  CTQ30353.1  9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PGKIVELD 52
                6***********************************.*****865 PP

>> S4_2  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     9e-06      0.08       5      41 ..       6      42 ..       3      55 .. 0.93
   2 ?   -1.7   0.0       0.3   2.7e+03      32      45 ..      63      76 ..      62      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9e-06
        S4_2  5 deyItLgqlLKlaglvesGgeaKafiaegeVkvNGev 41
                +e+++L++ L +a + ++ + a+++i+ g+V++NG+ 
  CTQ30353.1  6 TETVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR 42
                799********************************97 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.3
        S4_2 32 egeVkvNGevetrR 45
                e +V++ G +e+rR
  CTQ30353.1 63 ERTVRIIGITEQRR 76
                56888889999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 999.65
//
Query:       CTQ30354.1  [L=292]
Description: heat shock protein Hsp33 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-85  285.0   0.1    6.2e-85  284.8   0.1    1.0  1  HSP33     Hsp33 protein


Domain annotation for each model (and alignments):
>> HSP33  Hsp33 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.8   0.1   3.5e-89   6.2e-85       1     266 [.       5     272 ..       5     273 .. 0.93

  Alignments for each domain:
  == domain 1  score: 284.8 bits;  conditional E-value: 3.5e-89
                 .EEEEEEETTTTEEEEEEE-HHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHCCS-.T-EEEEEEEESSTT-EEEEEEETTSEEEEEES.....-TT-- CS
       HSP33   1 DkllrflledgsvRgrlvrltelveealkrhdlppavtallgealaaaallastlkfegrltlqikgdgplgllvaeadsdgevRgyar.....npave 94 
                 D+l+r+l+e+  vRg+lv+++e++e++l++h +p++v+++l+e+l+a++ll++tlkf g +t+q++gdgpl+l+v++ ++++++Rg+ar     +++++
  CTQ30354.1   5 DQLHRYLFENYAVRGELVTVSETLEQILANHTYPQPVKTVLAELLVATSLLTATLKFAGDITVQLQGDGPLQLAVINGNNQQQLRGVARvqgeiADDAD 103
                 89***************************************************************************************8776644445 PP

                 -..HH-SCEEEEE..EE.TC..EEEEEEE-SSSS.SHHHHHHHHHHCC-S-EEEEEEEEEETSCEEEEEEEEEEESTTTSCCHHHHHH.HHHCCS-.-H CS
       HSP33  95 lp.avgkGvlavt..kdqkegepyqGivelvsge.iaedlehYfaqSEQiptavalavlvdkrsvkaagGlllQlLPgadeeliedle.erlkalaatl 188
                 l  +vg+G+l++t  +  +ege+yqG+v l +g+ +a++le+Yf++SEQ+pt++ + +  + ++   agG+llQ++P +d    ++ + e+l++l++t+
  CTQ30354.1 104 LKtMVGNGYLVITisP--EEGERYQGVVGL-EGDtLAACLEDYFQRSEQLPTRLIIRTGDH-EGQPMAGGMLLQVMPAQDA---QTADfEHLATLTETI 195
                 55889********533..5778********.7777************************88.56789**********8884...33344799******* PP

                 HH.HC.CC-HHHHHHHHHHSTS--EEEEEEE-EE-----HHHHHHHHHTT-CHHHHHHHHCCTEEEEE-TTT--EEEE CS
       HSP33 189 teeelleelpaeellerlfheedvevleekpvefkCrCsrervekaLkslgkeeleeileedgkievtCefCgkkYrf 266
                 ++eel+ +lpa+++l rl+hee+v+v+++++vefkC+Csrer+++aLk+l+ ee+++il+++g+i+++C++Cg++Y f
  CTQ30354.1 196 KAEELF-TLPANDVLWRLYHEEEVTVYDPQSVEFKCTCSRERCAGALKTLPDEEIDSILADEGEIDMHCDYCGNHYIF 272
                 *****8.9********************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2419.87
//
Query:       CTQ30355.1  [L=540]
Description: phosphoenolpyruvate carboxykinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-210  699.9   0.0   1.6e-210  699.7   0.0    1.0  1  PEPCK_ATP  Phosphoenolpyruvate carboxykinase
    4.5e-06   26.9   0.2       0.09   12.9   0.0    2.6  2  AAA_33     AAA domain
  ------ inclusion threshold ------
       0.13   11.9   0.2       0.67    9.5   0.0    2.2  3  AAA_25     AAA domain


Domain annotation for each model (and alignments):
>> PEPCK_ATP  Phosphoenolpyruvate carboxykinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  699.7   0.0  2.6e-214  1.6e-210       2     464 ..      22     491 ..      21     492 .. 0.97

  Alignments for each domain:
  == domain 1  score: 699.7 bits;  conditional E-value: 2.6e-214
                 -EEES--HHHHHHHHHHT.....TS-EE-TTS-EEE--TT--S--GGGEEEE--TTTTTTS-BTTT......BEEE-HHHHHHHHHHHHHHHHTS-EEE CS
   PEPCK_ATP   2 kvirnlsvaeLveealkr.....eegkltstgalvvetgkktgRspkdkfiVedeetedkiwWgkv......nkpiseekfealkekvleylkekelyv 89 
                 ++++n+s++ L++e+l+      e+g+lt+ ga++v+tg +tgRspkdk++V+d++t+d++wW++       nkp+s+e++++lk  v+++l++k+l++
  CTQ30355.1  22 DIVHNPSYDMLFQEELDPnlegyERGVLTTLGAIAVDTGIFTGRSPKDKYLVRDDTTRDTVWWSDKgkgkndNKPLSQETWQHLKGLVTQQLSGKRLFI 120
                 689************9988888666**************************************886677777*************************** PP

                 EEEEE-SSTTT-EEEEEEES-HHHHHHHHHHSBGGS-S-TTT---SEEEEEETT----HHHH.--SSS-EEEEETTTTEEEEES---THHHHHHHHHHH CS
   PEPCK_ATP  90 vdafagadpkyrlkvrviterawqalfvknllirpteeeleefepdftilnapefkadpekd.glnsetvvalnlekklvlilgteYaGEikKsifsvm 187
                 vdaf+ga++++rl+vr+ite+awqa+fvkn++irp++eel+ef pdf+++n +++++ ++k+ glnse++va+nl+++++li+gt+Y+GE+kK++fs+m
  CTQ30355.1 121 VDAFCGANADTRLSVRFITEVAWQAHFVKNMFIRPSDEELAEFVPDFIVMNGAKCTNPQWKEqGLNSENFVAFNLTERIQLIGGTWYGGEMKKGMFSIM 219
                 ***********************************************************9988************************************ PP

                 HHHHHHTT-EEEEEEEEE-T.TS-EEEEEE-TTSSHHHHH-BTTB-EEESSEEEE-SS-EEES-SEEEEE-TT--TTTSHHHHHHHSTT-EEES-EE-T CS
   PEPCK_ATP 188 nyllpkkgvlsmhcsanvgekkgdvalfFGLSGtGKTtLsadperkligdDehgwsdegvfniegGcYaKtidLskekepeiynairfgavlENvvlde 286
                 nyllp kg++smhcsanvg +kgdva+fFGLSGtGKTtLs+dp+r+ligdDehgw+d+gvfn+egGcYaKti+Ls+ +ep+iy+air++a+lENvv++ 
  CTQ30355.1 220 NYLLPLKGIASMHCSANVG-EKGDVAIFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSEAAEPDIYHAIRRNALLENVVVR- 316
                 *******************.677**************************************************************************6. PP

                 TT--EETT--SS-S--EEEEEGGGSSSB-TT.SEE--EEEEEEEE--TTS-S-SEEEE-HHHHHHHHHH-EEEE-----------EEEE-GGG-GGG-S CS
   PEPCK_ATP 287 etrevdfddtslteNtrvaypiehienakee.svaghpkniifLtadafgvlPpvskLtkeqamyhFlsGytakvaGtergvtepeatFsacfgapFlp 384
                 ++++vdfdd s+teNtrv+ypi+hi+n++++ s+agh++++ifLtadafgvlPpvs+Lt++q++yhFlsG+tak+aGtergvtep++tFsacfga+Fl 
  CTQ30355.1 317 ADGTVDFDDGSKTENTRVSYPIDHIDNIVKPvSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLAGTERGVTEPTPTFSACFGAAFLS 415
                 67999**********************77661566**************************************************************** PP

                 S-HHHHHHHHHHHHHHH--EEEEEE-SEESSSTTTSEE--HHHHHHHHHHHHTTCCCTS-EEE-TTT--EEES-BTTC-G CS
   PEPCK_ATP 385 lhpteyaelLaeklekhnakvyLvNtGwtggaygvgkrislkatraiikaildgeleavefekdpvfglevptevpgvps 464
                 lhpt+yae+L +++++++a++yLvNtGw+g+    gkris+k+traii+ail+g+l+++e+ + p+f+l++pt++pgv++
  CTQ30355.1 416 LHPTQYAEVLVKRMQAAGAQAYLVNTGWNGT----GKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLQIPTALPGVDT 491
                 *****************************98....*********************999*******************97 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.5e-05      0.09      26      79 ..      71     125 ..      65     162 .. 0.73
   2 !   11.1   0.0   5.5e-05      0.33       1      17 [.     243     259 ..     243     265 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
      AAA_33  26 vllssdtlrrrlfg.tdqqsktdytrvldrlyqilnelarkalsagrnvildatn 79 
                 +l++ dt r+++   ++ + k+d + ++++++q+l++l+++ ls +r +i+da +
  CTQ30355.1  71 YLVRDDTTRDTVWWsDKGKGKNDNKPLSQETWQHLKGLVTQQLSGKRLFIVDAFC 125
                 68999*****9999455566677777**************************853 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 5.5e-05
      AAA_33   1 lvllvGlpGsGKstlae 17 
                 + ++ Gl+G+GK+tl++
  CTQ30355.1 243 VAIFFGLSGTGKTTLST 259
                 679************86 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00011      0.67      31      52 ..     239     260 ..     234     270 .. 0.90
   2 ?   -3.7   0.0       1.2   7.2e+03     145     175 ..     314     344 ..     290     349 .. 0.59
   3 ?   -1.2   0.0      0.21   1.3e+03     139     176 ..     485     525 ..     422     536 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00011
      AAA_25  31 pagelallaGapgtGKttlald 52 
                  +g++a+++G +gtGKttl +d
  CTQ30355.1 239 EKGDVAIFFGLSGTGKTTLSTD 260
                 5899**************9876 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.2
      AAA_25 145 lvviDplsralggdensnsdvgalvealeri 175
                 +v  D    + +g++++n+ v+  ++++++i
  CTQ30355.1 314 VVRADGTVDFDDGSKTENTRVSYPIDHIDNI 344
                 3333555666666666666666666666666 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.21
      AAA_25 139 evegvrlvviDplsralgg...densnsdvgalvealeria 176
                 + +gv+  ++Dp s   +    +e+++  ++ ++e++e+  
  CTQ30355.1 485 ALPGVDTHILDPRSTYGSPeqwQEKADQLAKLFIENFEKYT 525
                 45677777888888877666667777777788888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 4108.47
//
Query:       CTQ30356.1  [L=451]
Description: sensory histidine kinase in two-component regulatory system with OmpR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-20   73.1   0.0    4.4e-20   72.3   0.0    1.5  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
    6.4e-10   38.9   0.0    1.5e-09   37.7   0.0    1.7  1  HisKA        His Kinase A (phospho-acceptor) domain
    2.2e-08   34.4   0.1    5.9e-07   29.8   0.0    3.0  3  HAMP         HAMP domain
    0.00043   20.2   0.0    0.00091   19.2   0.0    1.6  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.035   13.9   0.0      0.057   13.2   0.0    1.3  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   1.2e-23   4.4e-20       6     110 ..     337     438 ..     332     440 .. 0.91

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 1.2e-23
                 HHHHHHHHHHHHHHHHSTTTEEEEEEEE.EE.TEEEEEEEESSSSSTTHHHTGTCSTTCHHCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEE CS
   HATPase_c   6 LrqiisnlvdNavkfatkageieveika.se.ddlvisveDnGiGipkedlkklfekfsqddstkrggggtGlGlsivkklvelmgGeiwvesepgrGt 102
                 +++++ n+v Na+++    g++++++++ se  + +++veD+G+Gi +e++++lf++f++ ++++r+++gtGlGl+iv+++++ ++G++++ s++ +G 
  CTQ30356.1 337 IKRALANMVVNAARY----GNGWIKVSSgSEaSRAWFQVEDDGPGIKPEQREHLFQPFVR-GDSARSTSGTGLGLAIVQRIIDNHNGRLEIGSSERGGL 430
                 78899*********9....67888888653369***************************.99*******************************99999 PP

                 EEEEEEES CS
   HATPase_c 103 tftftlpl 110
                  ++ +lp 
  CTQ30356.1 431 LIRAWLPV 438
                 99999986 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   4.2e-13   1.5e-09       3      63 ..     235     289 ..     233     293 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 4.2e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       HisKA   3 grflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsr 63 
                 + ++agv+H+LrtPL+ i++++e++ +      +   + e+i + ++ +++++e++ d+ r
  CTQ30356.1 235 TLLMAGVSHDLRTPLTRIRLATEMMGE------QDGYLAESINKDIEECNAIIEQFIDYLR 289
                 6799********************966......6788999****************99866 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.7e-10   5.9e-07       1      50 [.     177     226 ..     177     229 .. 0.94
   2 ?    0.7   0.0      0.19   6.9e+02       7      23 ..     246     262 ..     241     276 .. 0.79
   3 ?   -3.1   0.0       3.1   1.1e+04       6      28 ..     337     359 ..     336     364 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.7e-10
                 HHHHTTHHHHHHHHHHHHHHTTTBTSSTCCTTSSSHHHHHHHHHHHHHHH CS
        HAMP   1 llarrilrPLrrLaraarriaaGdldtrlpvsgrDEiGeLarafNaMldr 50 
                 l++r   rPL  L+ aa ++++G + ++l ++g  E++ + rafN+M+  
  CTQ30356.1 177 LFIRIQNRPLVDLEHAALQVGRGIIPPPLREYGASEVRSVTRAFNHMAAG 226
                 578999*****************************************975 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHHHHTTT CS
        HAMP   7 lrPLrrLaraarriaaG 23 
                   PL r++ a++ +++ 
  CTQ30356.1 246 RTPLTRIRLATEMMGEQ 262
                 57**********99974 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.1
                 THHHHHHHHHHHHHHTTTBTSST CS
        HAMP   6 ilrPLrrLaraarriaaGdldtr 28 
                 i r L +++  a+r ++G+++++
  CTQ30356.1 337 IKRALANMVVNAARYGNGWIKVS 359
                 66778888888889888986654 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.5e-07   0.00091      31     112 ..     336     416 ..     294     431 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.5e-07
  HATPase_c_2  31 eirlaveEactNavehayleapegpvevrlesdeealtvevaDsGpgfdpetlpdpteeep......keslkegGrGlalikglvDev 112
                   i+ a++ +++Na ++++     g ++v+  s++ +  ++v+D+Gpg +pe++++  +  p      + s    G+Gla+++++ D  
   CTQ30356.1 336 SIKRALANMVVNAARYGN-----GWIKVSSGSEASRAWFQVEDDGPGIKPEQREHLFQ--PfvrgdsARSTSGTGLGLAIVQRIIDNH 416
                  567788889999999999.....6899**99****************99998776554..3447778999999***********9975 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.6e-05     0.057       3      74 ..     337     403 ..     335     411 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
  HATPase_c_3   3 lekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknalrlatsskeakrkstslGkkG 74 
                   + Ala +v N+       +k++   +  + + +++eDdG G+++e+ +  +++     +    ++s++  G
   CTQ30356.1 337 IKRALANMVVNAARYGNGWIKVSSGSEA-SRAWFQVEDDGPGIKPEQREHLFQPFVRGDS----ARSTSGTG 403
                  5789*******98888888999999975.799**************99998886544444....23444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3622.64
//
Query:       CTQ30357.1  [L=239]
Description: two-component response regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-30  103.0   0.0    1.4e-29  102.5   0.0    1.3  1  Response_reg  Response regulator receiver domain
    9.1e-23   80.1   0.0    2.2e-22   78.9   0.0    1.7  1  Trans_reg_C   Transcriptional regulatory protein, C terminal
      0.006   17.0   0.0      0.012   16.0   0.0    1.5  2  FleQ          Flagellar regulatory protein FleQ


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   2.4e-33   1.4e-29       1     112 []       7     117 ..       7     117 .. 0.99

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 2.4e-33
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   +l+vdDd  +r+ll+++l+e+g+ +v+++++++++ +ll +e+++l++lD+++pg dGl +++++r +++ +p+i++ta++ee d++ +l++gadd+
    CTQ30357.1   7 ILVVDDDMRLRALLERYLTEQGF-QVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDY 102
                   8**********************.************************************************************************* PP

                   EESSG-HHHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkale 112
                   + Kpf+p+eLl++++
    CTQ30357.1 103 IPKPFNPRELLARIR 117
                   ***********9985 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   3.8e-26   2.2e-22       2      77 .]     157     232 ..     156     232 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 3.8e-26
                  EEEE-SHHHHHHHHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHTTTTSSSSEEEETTTEEEE CS
  Trans_reg_C   2 eeveltpkefklLelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLeddekkprlIetvrgvGYrl 77 
                  e++ lt+ ef++L++L+++p++++sr++L++   g+++   +r++dv+isrLR+ +e+d+++pr+I+tv+g GY++
   CTQ30357.1 157 EPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232
                  7899**********************************************************************87 PP

>> FleQ  Flagellar regulatory protein FleQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     2e-06     0.012       1      82 [.       6      90 ..       6     118 .. 0.81
   2 ?   -3.1   0.0       1.7     1e+04      85     101 ..     170     186 ..     133     188 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2e-06
        FleQ  1 kiLvidddaerrrdletiLeFlgeeveavsseel.saaleesssealavilgsvs.sleealealaekdphlPvlllgesdea.e 82
                kiLv+ddd + r  le  L+  g +v+ v+++e  ++ l+++s++++++ l        + +++l ++++ +P+++++ ++e+ +
  CTQ30357.1  6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQmDRLLTRESFHLMVLDLMLPGeDGLSICRRLRSQSNPMPIIMVTAKGEEvD 90
                7************************99887766637777777777777765544457799******************9998833 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
        FleQ  85 anvigelelPlnYnqLt 101
                 + ++++  +Pl+ ++L+
  CTQ30357.1 170 KALVSHPREPLSRDKLM 186
                 33555556666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1752.56
//
Query:       CTQ30358.1  [L=157]
Description: transcription elongation factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-26   92.4   0.5    2.1e-26   91.9   0.5    1.3  1  GreA_GreB_N  Transcription elongation factor, N-terminal
    2.6e-22   78.5   0.0      4e-22   77.9   0.0    1.3  1  GreA_GreB    Transcription elongation factor, GreA/GreB, C-te
  ------ inclusion threshold ------
      0.088   12.9   0.1       0.17   12.0   0.0    1.5  1  Crl          Sigma factor-binding transcriptional regulator C


Domain annotation for each model (and alignments):
>> GreA_GreB_N  Transcription elongation factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.5   3.5e-30   2.1e-26       2      71 .]       5      74 ..       4      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 3.5e-30
                 EE-HHHHHHHHHHHHHHHHXHHHHHHHHHHHHHHHSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHTEEE CS
  GreA_GreB_N  2 ylTkegyekleeeLeelktverpeiaeaikeareeGDlsENaeYdaAkeeqaeiearIreLedkLanaev 71
                 ++T+egyekl++e+++l+++erpe+++++ +a++ GD+sENa+Y++ k++++ei++r+r+L++ L++ ++
   CTQ30358.1  5 LITREGYEKLKQEMDYLWRQERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCLEQLKI 74
                 59****************************************************************9987 PP

>> GreA_GreB  Transcription elongation factor, GreA/GreB, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   6.6e-26     4e-22       2      77 .]      81     155 ..      80     155 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 6.6e-26
                 ..SS--TT-EEEEE-.SS--EEEE----TTT-BS-SSB--TTSHHHHHHTT--TT-EE---BTTB---EEEEEEX. CS
   GreA_GreB   2 pkdvVtfGstVtledldtgeeetytiVgpdeadpskgkiSveSPlGkaLlgkkvGdevevkapsgkikveIlkiey 77 
                 ++++V+fG++V++e+ d+g+ ++++iVg de+  +k++iS++SP+++aLl+k+vGd + v++p+g+ ++ + +iey
  CTQ30358.1  81 QEGKVFFGAWVEIEN-DEGDIKRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAIVNTPAGEASWYVNEIEY 155
                 789************.**********************************************************98 PP

>> Crl  Sigma factor-binding transcriptional regulator Crl
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.8e-05      0.17      29      71 ..      63     107 ..      53     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.8e-05
                 EEEEEEEEE..ES-TTS-GGG--EEEEEEEEEEETTEEEEEEEEE CS
         Crl  29 rfffDCLav..CvnakkapekrefwGWWleleaeeeefeyeyqlG 71 
                 r++  CL+    v+  ++ e + f+G W+e+e++e  ++  + +G
  CTQ30358.1  63 RYLTKCLEQlkIVDYSPQQEGKVFFGAWVEIENDEGDIKRFRIVG 107
                 7888999853369999999**************999887766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1334.69
//
Query:       CTQ30359.1  [L=776]
Description: transcriptional accessory protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-72  243.3   0.8    2.2e-72  242.6   0.8    1.4  1  Tex_N           Tex-like protein N-terminal domain
    1.1e-50  171.3   0.3    1.8e-50  170.6   0.3    1.4  1  Tex_YqgF        Tex protein YqgF-like domain
    9.6e-29   99.4   0.0      2e-28   98.4   0.0    1.6  1  HHH_3           Helix-hairpin-helix motif
    5.2e-24   84.9   0.0    1.7e-23   83.3   0.0    2.0  1  HHH_9           HHH domain
    5.2e-22   78.0   0.4    1.1e-21   77.0   0.4    1.5  1  S1              S1 RNA binding domain
      4e-10   40.0   0.0    1.3e-09   38.3   0.0    1.9  1  HHH_7           Helix-hairpin-helix motif
      8e-07   29.0   0.0    1.6e-06   27.9   0.0    1.5  1  YqgF            Holliday-junction resolvase-like of SPT6
  ------ inclusion threshold ------
      0.022   15.0   0.1       0.11   12.7   0.0    2.2  2  HHH_6           Helix-hairpin-helix motif
      0.068   12.5   0.2       0.13   11.5   0.2    1.4  1  ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV


Domain annotation for each model (and alignments):
>> Tex_N  Tex-like protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.6   0.8   1.1e-75   2.2e-72       1     182 []      10     194 ..      10     194 .. 0.98

  Alignments for each domain:
  == domain 1  score: 242.6 bits;  conditional E-value: 1.1e-75
       Tex_N   1 iaeelslkekqveavveLldegatvPFIARYRkeatggldeeqlreieerleylrelekrkeevlksieeqgklteeLkkkieaaktleeledlylpYk 99 
                 ia el+ +++qvea+v+Lldeg+tvPFIARYRke+tggld++qlr++e+rl ylrele+r++++lksi+eqgklt++L+k+i+++ +++eledlylpYk
  CTQ30359.1  10 IAGELQARAEQVEAAVRLLDEGNTVPFIARYRKEVTGGLDDTQLRNLETRLGYLRELEDRRQAILKSIAEQGKLTDALEKAINTTLSKTELEDLYLPYK 108
                 7889*********************************************************************************************** PP

       Tex_N 100 pkrkTkatiArekGLeplAelileqksl.aeeeaakyvn..kevksaeealegardIiaeeisedaelrkklrellkkegvivskv 182
                 pkr+T+ +iA+e+GLeplA+l+++++ + +e+eaaky++  k+v+++++al+gar I++e+++eda+l +k+r++l+k++++vs+v
  CTQ30359.1 109 PKRRTRGQIAIEAGLEPLADLLWNEPAHdPEAEAAKYIDadKGVADSKAALDGARYILMERFAEDAALLAKVRDYLWKNAHLVSTV 194
                 ************************9966589********99****************************************99975 PP

>> Tex_YqgF  Tex protein YqgF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.6   0.3   9.2e-54   1.8e-50       2     126 .]     328     451 ..     327     451 .. 0.96

  Alignments for each domain:
  == domain 1  score: 170.6 bits;  conditional E-value: 9.2e-54
                 -EEEEE--STT-EEEEEE-TTS-EEEEEEE--STTT--HHHHHHHHHHHHHHTT--EEEEESSTTHHHHHHHHHHHHHH.GGG--EEEEE--TTHHHHH CS
    Tex_YqgF   2 vvlglDPgyrtGcKlavvdetgkvletaviyphepkkkveeakkklkklvkkykveliaiGnGtasreteklvaelike.eelkvkyvivsEaGaSvYS 99 
                 +++glDPg+rtG+K+avvd+tgk+++t++iyph+ +   ++a+ ++++l++ky+vel+aiGnGtasrete++  ++ k+  + ++++vivsEaGaSvYS
  CTQ30359.1 328 ATMGLDPGLRTGVKVAVVDATGKLVATDTIYPHTGQ--AAKAAVAVAALCEKYNVELVAIGNGTASRETERFFLDVQKQfPKVTAQKVIVSEAGASVYS 424
                 68*******************************655..5799999********************************99778899************** PP

                 HSHHHHHH-TTS-HHHHHHHHHHHHHH CS
    Tex_YqgF 100 aselaaeEfpdldvslrgavsiarrlq 126
                 aselaa+Efpdldvslrgavsiarrlq
  CTQ30359.1 425 ASELAAQEFPDLDVSLRGAVSIARRLQ 451
                 **************************9 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.0     1e-31     2e-28       1      65 []     491     555 ..     491     555 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.4 bits;  conditional E-value: 1e-31
       HHH_3   1 vnavgvdiNtAsaeeLqklpGlgpklAknIvayReknGpfksreeLlkvkglgpktfeqlagflr 65 
                 vnavgvd+NtAs+++L++++Gl+ ++A+nIva+R++nG+f++r++Llkv++lgpk+feq+agflr
  CTQ30359.1 491 VNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLR 555
                 79*************************************************************97 PP

>> HHH_9  HHH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   8.5e-27   1.7e-23       1      70 []     561     630 ..     561     630 .. 1.00

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 8.5e-27
       HHH_9   1 npLDnTavHPEsYalakkllkklgldlkeligeeallkkldkkklaeeevgeptleDIleeLakPgrDpR 70 
                 npLD++ vHPE Y++++++l+++++ lk+l+g++++l++l++  +++e++g pt++DI++eL+kPgrDpR
  CTQ30359.1 561 NPLDASTVHPEAYPVVERILAATQQALKDLMGNSSALRHLKAVDFTDEKFGVPTVTDIIKELEKPGRDPR 630
                 9********************************************************************9 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.4   5.3e-25   1.1e-21       5      75 .]     651     720 ..     649     720 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 5.3e-25
                 TCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   5 gevveGeVtsvtkgGafVelgngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 g ++eG Vt+vt++GafV++g +++g+v++s+ls++  vedp++v+k Gd vkvkv +vd  r+ri+l+++
  CTQ30359.1 651 GMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSDR-FVEDPHTVVKAGDIVKVKVMEVDLPRKRIALTMR 720
                 899*********************************.*******************************986 PP

>> HHH_7  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   6.6e-13   1.3e-09       5     103 ..     464     556 ..     461     557 .. 0.92

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 6.6e-13
                 TS---TTGGGS-HHHHHHHHHHHHHHHHHHH-EEHHHHCT-HHHHGGGGGSTT--HHHHHHHHHHHHHC-S----TTHHHHTTSS-HHHHHHHCCCEE- CS
       HHH_7   5 slsfhPlqellskeellkaletalvdivnlvgvdvnkavankyeaallkyiaGlGprkatdllkklkrlnerlearsqlitkqilskkvflncagflki 103
                 s+ +  +q+ +s+ +l + l++ + d vn vgvd+n a     +  ll  +aGl +  a++++   +  n+++++r+ql+  + l++k f  cagfl i
  CTQ30359.1 464 SIGVGQYQHDVSQTQLARKLDAVVEDCVNAVGVDLNTA-----SVPLLTRVAGLTRMMAQNIVA-WRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLRI 556
                 5667789*****************************99.....5689*******9999999875.688999**************************99 PP

>> YqgF  Holliday-junction resolvase-like of SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   8.2e-10   1.6e-06      73     147 ..     391     458 ..     338     461 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 8.2e-10
                 STHHHHHHHHHHHHHHHTTB-TTS-B--EEE---TTHHHHHTSHHHHHHSTT--HHHHHHHHHHHHHH-HHHHHH CS
        YqgF  73 nrdaqkliedvkevlhekeqdsrlstvgvilvddevailYqnskkaeaefrdkPpllkyavalaRkiqdPLleya 147
                 +r+++++  dv++   +          + ++v +  a  Y  s+ a++ef+d+   l+ av++aR++qdPL e  
  CTQ30359.1 391 SRETERFFLDVQKQFPKVT-------AQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELV 458
                 5556666666665555544.......23356888899**********************************9976 PP

>> HHH_6  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.5   4.9e+03      79      89 ..      62      71 ..      36     104 .. 0.55
   2 ?   12.7   0.0   5.6e-05      0.11      29      72 ..     506     548 ..     473     552 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.5
       HHH_6 79 aldslglnRrq 89
                 l++l+ +Rrq
  CTQ30359.1 62 YLRELE-DRRQ 71
                444443.3332 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.6e-05
       HHH_6  29 LaaikglgeaaaerivaeRekegpfksledlarrvdslnkrqle 72 
                 L+ + gl++  a++iva R+++g+f++ ++l++  + l  +++e
  CTQ30359.1 506 LTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSR-LGPKAFE 548
                 899***************************998776.6666655 PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   6.5e-05      0.13      97     182 ..      13      96 ..      11     112 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.5e-05
  ALIX_LYPXL_bnd  97 ivrqklqenkedlelLsgpeeeleaalpssssaaasesveeqirklrsllekldelkaereqllkdlkekaendDitpklltekkr 182
                      ++++ ++++++++lL  +e  +  ++   +++ ++  ++ q+r+l++ l  l el+++r+ +lk++ e+ +  D  +k ++ + +
      CTQ30359.1  13 ELQARAEQVEAAVRLL--DEGNTVPFIARYRKEVTGGLDDTQLRNLETRLGYLRELEDRRQAILKSIAEQGKLTDALEKAINTTLS 96 
                     5788899999999999..444566666655555568999****************************9988888877777665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.39
# Mc/sec: 5949.96
//
Query:       CTQ30360.1  [L=75]
Description: ferrous iron transporter, protein A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-08   32.2   0.0      1e-07   32.1   0.0    1.1  1  FeoA      FeoA domain


Domain annotation for each model (and alignments):
>> FeoA  FeoA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   5.8e-12     1e-07      11      72 ..       8      70 ..       2      72 .. 0.86

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 5.8e-12
                EEEEEEE-T.T.SSHHHHHHHHT--TT-EEEEEEE-TTS-SEEEEETTEEEEE-HHHHTTEEE CS
        FeoA 11 rgeiarisd.edpellrrLremGlvpGarievvarapfggplvvrvgdtrvaLgreeAqaIlV 72
                + +i+++s   +p+ +++L+++G+ pG++  vv+ ap+g+p+ ++ +   ++L+++  + I  
  CTQ30360.1  8 AWKITGFSRdISPAYRQKLLSLGMLPGSSFHVVRVAPLGDPVHIETRRVSLVLRKKDLALIEL 70
                55677766565699*********************************999*****99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       189  (0.0105416); expected 358.6 (0.02)
Passed bias filter:                      182  (0.0101512); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 693.12
//
Query:       CTQ30361.1  [L=772]
Description: fused ferrous iron transporter, protein B: GTP-binding protein; membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-64  214.9   0.1    7.5e-64  214.0   0.1    1.5  1  FeoB_N       Ferrous iron transport protein B
    1.9e-49  166.6  16.7    4.4e-37  126.8   0.6    3.0  3  Gate         Nucleoside recognition
    6.3e-22   77.0   1.0    6.3e-22   77.0   1.0    2.7  2  FeoB_C       Ferrous iron transport protein B C terminus
    1.7e-19   70.0   0.0    3.2e-19   69.1   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
    5.2e-06   26.0   0.0    8.5e-06   25.3   0.0    1.3  1  SRPRB        Signal recognition particle receptor beta subuni
    5.5e-06   26.8   0.0    1.1e-05   25.9   0.0    1.5  1  FeoB_Cyto    FeoB cytosolic helical domain
      0.001   19.0   0.5       0.79    9.6   0.0    2.3  2  RsgA_GTPase  RsgA GTPase
     0.0014   18.7   0.5       0.89    9.6   0.2    2.2  2  Dynamin_N    Dynamin family
     0.0019   17.8   0.2       0.27   10.8   0.2    2.8  1  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0045   16.8   0.4       0.13   12.0   0.1    2.2  2  ATP_bind_1   Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
       0.16   11.2   0.0       0.25   10.7   0.0    1.2  1  AIG1         AIG1 family


Domain annotation for each model (and alignments):
>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.0   0.1   4.6e-67   7.5e-64       2     153 ..       5     160 ..       4     163 .. 0.97

  Alignments for each domain:
  == domain 1  score: 214.0 bits;  conditional E-value: 4.6e-67
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSS....SSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYsl....sayseeekvardflleeepdvvvnvvdatnlernLy 96 
                 tv l+Gnpn+Gkttlfn+ltga+q+vgNw+Gvtve+keg + +++++v++vDlPG+Ysl    s++s +e++a++++l+ ++d+++nvvda+nlernLy
  CTQ30361.1   5 TVGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDHQVTLVDLPGTYSLttisSQTSLDEQIACHYILSGDADMLINVVDASNLERNLY 103
                 789********************************************************888778999******************************* PP

                 HHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH CS
      FeoB_N  97 LtlqllelgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieell 153
                 Ltlqllelg+p+v+alnm+d aek++++id+++L+++Lg+pv+++++++++gie+l+
  CTQ30361.1 104 LTLQLLELGIPCVVALNMLDIAEKQKVRIDIDALAARLGCPVIPLVSTRGRGIEALK 160
                 ******************************************************997 PP

>> Gate  Nucleoside recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.3       8.3   1.4e+04      27      27 ..     302     302 ..     283     329 .. 0.54
   2 !   48.9   3.9   4.1e-16   6.7e-13       4     109 ..     353     443 ..     350     446 .. 0.94
   3 !  126.8   0.6   2.7e-40   4.4e-37       1     110 [.     512     689 ..     512     691 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 8.3
        Gate  27 i 27 
                 i
  CTQ30361.1 302 I 302
                 2 PP

  == domain 2  score: 48.9 bits;  conditional E-value: 4.1e-16
        Gate   4 agpiillasiliwflssssllgrigkllepvfaplgqeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpksalafllfvllytpcvatl 102
                 ++p i ++ ++++fl++s++++r++++++ +++ lg  l++k++v+l++gf+   ++v++++  +         + d p+++l ++++  +++ c+a+l
  CTQ30361.1 353 LVPQIGMMYLFLSFLEDSGYMARAAFVMDRLMQALG--LPGKSFVPLIVGFG---CNVPSVMGAR---------TLDAPRERLMTIMMAPFMS-CGARL 436
                 6789999*****************************..**************...*********9.........*****************98.***** PP

        Gate 103 avivrel 109
                 a+++ ++
  CTQ30361.1 437 AIFAVFA 443
                 *998776 PP

  == domain 3  score: 126.8 bits;  conditional E-value: 2.7e-40
        Gate   1 llkagpiillasiliwflss............ssllgrigkllepvfaplg.qeldwkatvslltgfaakevvvgtlgtly.................. 68 
                 +l+ag++i+++si+++ l+s            +s+l+ ++++++pvf+p+g +e++w+atv+l+tg +akevvvgtl+tly                  
  CTQ30361.1 512 VLRAGKVIVIVSIFLSALNSfslsgkvvdninDSALASVSRVITPVFKPIGvHEDNWQATVGLFTGAMAKEVVVGTLNTLYtaediqneefnpqtfslg 610
                 689************************************************************************************************ PP

        Gate  69 .....................................tsalgellqgfdtpksalafllfvllytpcvatlavivrelg 110
                                                      t+a+g + ++f + ++a+++l+fvlly+pc++++++i+re++
  CTQ30361.1 611 eellaavdetwqglkdtfslsvlanpieaskgdgemaTGAMGVMGSKFGSAAAAYSYLIFVLLYIPCISVMGAIARESS 689
                 ****************************************************************************986 PP

>> FeoB_C  Ferrous iron transport protein B C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   1.0   3.9e-25   6.3e-22       1      53 []     455     507 ..     455     507 .. 0.98
   2 ?   -3.4   0.3       4.9   7.9e+03       7      16 ..     519     528 ..     518     535 .. 0.59

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 3.9e-25
      FeoB_C   1 lfslYllgilvallvalllkktt.lkgepspfvmELPpYrlPslknvliktweR 53 
                 +fslY+lgi++a+l++l+lk+ t ++ge+spfvmELP Y++P++k+++i+tw+R
  CTQ30361.1 455 VFSLYVLGIVMAILTGLMLKH-TiMRGEASPFVMELPVYHVPHIKSLIIQTWQR 507
                 79*******************.99****************************98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.9
      FeoB_C   7 lgilvallva 16 
                 + i+ ++l+a
  CTQ30361.1 519 IVIVSIFLSA 528
                 4455555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0     2e-22   3.2e-19       2     113 ..       6     120 ..       5     121 .. 0.78

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 2e-22
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS......HHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGlie......gaseekglgkaflaleeadlillvvdaseeklkpld 94 
                 v+++G+pN+GK+tL+n+ltg++ +v++++g+T + +eg +++ +++++lvD+pG ++      + s +++++ ++    +ad+++ vvdas + l+++ 
  CTQ30361.1   6 VGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDHQVTLVDLPGTYSlttissQTSLDEQIACHYILSGDADMLINVVDAS-N-LERNL 102
                 89***************************************999**********86444443355556677777777788*********88.4.44432 PP

                 HHHHHHHHHTTSEEEEEEE CS
    MMR_HSR1  95 eeleelleeakkplilvln 113
                     +l  e ++p++++ln
  CTQ30361.1 103 YLTLQL-LELGIPCVVALN 120
                 222222.245567777666 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   5.2e-09   8.5e-06       5      91 ..       5     101 ..       1     129 [. 0.67

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 5.2e-09
                 EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHH.........HHHGGEEEEEEEEETTS-HHH CS
       SRPRB   5 avllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvksekgskltliDfPGheklrqkllekl.........kaksslkglvfvvDStidpke 91 
                 +v l+G  +sGKT+lf++Lt    +    +    +  + + ++ ++++tl+D+PG  +l +  +++          + +  +  l+ vvD++  +++
  CTQ30361.1   5 TVGLIGNPNSGKTTLFNQLTGARQRVGNWAGvTVERKEGIFATTDHQVTLVDLPGTYSLTTISSQTSldeqiachyILSGDADMLINVVDASNLERN 101
                 67799***************986665544443666667777899***********998865433332000000000333345556666666655555 PP

>> FeoB_Cyto  FeoB cytosolic helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   6.7e-09   1.1e-05       1      89 [.     177     259 ..     177     261 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 6.7e-09
   FeoB_Cyto   1 YgeeiEkaiekleellkesnlkaklppRwlAlklLegDeelleelkedpelraeveearkeleaelgedledvIvdarykfiegilrev 89 
                 Y++ + ++ + l + ++++   +  ++Rwl l++LegD + + +  +    +++++ a ++l +e+ +d+  +I+dary+ i++i+++v
  CTQ30361.1 177 YPQPLLREADLLAQQMSAQ--IPTRQRRWLGLQMLEGDIYSRAYAGD---AADKLDIALANLSDEI-DDPALHIADARYQTIAAICDAV 259
                 5556666666666666666..88889*************99999999...899999999*****99.5899***************987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.2    0.0024       3.9     101     146 ..       5      52 ..       1      64 [. 0.69
   2 !    9.6   0.0   0.00048      0.79      41      99 ..     107     165 ..      88     169 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0024
                  EEEEECSTTSSHHHHHHHHCTT-----S-...-------------SEEE CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktge...vseklgrGkhTTtavel 146
                  t+ l+G+   GK+tL n+l++  ++++g+   v  + ++G   Tt  ++
   CTQ30361.1   5 TVGLIGNPNSGKTTLFNQLTGA-RQRVGNwagVTVERKEGIFATTDHQV 52 
                  566999999***********97.56665422277777788777765544 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00048
                  HHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  41 laeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkd 99 
                  ++ e gi+ v++ln +D++e+++   ++ +  ++lg++v+ + +++++g+e+lk +l+ 
   CTQ30361.1 107 QLLELGIPCVVALNMLDIAEKQKVRIDIDALAARLGCPVIPLVSTRGRGIEALKIALDR 165
                  356789*****************7778889999*********9**********998876 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0027       4.4       1      22 [.       6      27 ..       6      39 .. 0.90
   2 !    9.6   0.2   0.00055      0.89      95     140 ..      44      97 ..      37     109 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0027
                EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlged 22
                + ++G+ +sGK+++ n+L+g++
  CTQ30361.1  6 VGLIGNPNSGKTTLFNQLTGAR 27
                6799***************987 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00055
                 EEETTS-SEEEEE---B-S.SSGTTS.....HHHHHHH..STTEEEEEEEETTS CS
   Dynamin_N  95 ilsllvkgltlvDlPGlds.vnkrdq.....elvkeyi..kkadiilavtsanh 140
                 i++ +++++tlvDlPG  s +    q     +++ +yi   +ad+++ v++a++
  CTQ30361.1  44 IFATTDHQVTLVDLPGTYSlTTISSQtsldeQIACHYIlsGDADMLINVVDASN 97 
                 5678999*********99954444446788877777776778888888888876 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.2   0.00016      0.27       5     137 ..       5     128 ..       2     168 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEET CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvda 103
                 ++g+ig  ++GKtTL  +L+ + +++ +                    g+T++ +   +   t++++++l+D PG   +s ++i +   lD  +    +
  CTQ30361.1   5 TVGLIGNPNSGKTTLFNQLTGARQRVGN------------------WAGVTVERKEGIFA--TTDHQVTLVDLPGT--YSLTTISSQTSLDEQIACHYI 81 
                 7899999999999999999844444333..................34666666666677..88888888888885..555555555555544444444 PP

                 TTB............STHHHHHHHHHHHHTTTEEEEEEESCGST.HH CS
    GTP_EFTU 104 veG............vepqteevlrlalkegvpiivfiNKmDrl.ka 137
                  +G              ++   +  ++l++g+p +v++N +D + k+
  CTQ30361.1  82 LSGdadmlinvvdasNLERNLYLTLQLLELGIPCVVALNMLDIAeKQ 128
                 44444444444322223333445566777888888888888877444 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.06        98       2      22 ..       9      29 ..       8      38 .. 0.84
   2 !   12.0   0.1   7.9e-05      0.13      90     174 ..      49     129 ..      39     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.06
  ATP_bind_1  2 vGpaGsGKttfvgalseilel 22
                +G + sGKtt+ ++l+  ++ 
  CTQ30361.1  9 IGNPNSGKTTLFNQLTGARQR 29
                899**********99877665 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 7.9e-05
  ATP_bind_1  90 eddyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltd..ptkfisgllsalsamlrlelPhvvvlnkfDllkekle 174
                 +++  l+D PG   l t+s++ +     L +++a   +   D+ +l +   ++ +++ l+    +l+l++P vv+ln +D+++ k++
  CTQ30361.1  49 DHQVTLVDLPGTYSLTTISSQTS-----LDEQIACHYILSGDADMLINvvDASNLERNLYLTLQLLELGIPCVVALNMLDIAE-KQK 129
                 66899***************999.....998999999999999999986655678888***********************66.333 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00015      0.25       2      98 ..       5     100 ..       4     110 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTC.CHHCHHHHHHHHHHHCTT-ESEEEEEEETTB-SH CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsv.sadkiskeivrclllseegihalllvlslgrfte 98 
                 t+ l+G   +Gk +  N + g ++   +   ++vt + ++   +  ++++  +D Pg  +l + s ++   e + c  + +   ++l+ v++++++++
  CTQ30361.1   5 TVGLIGNPNSGKTTLFNQLTGARQRVGN--WAGVTVERKEGIFATTDHQVTLVDLPGTYSLTTiSSQTSLDEQIACHYILSGDADMLINVVDASNLER 100
                 566999*************999987766..5999999999999****************999845666677888899999888999999998877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 5527.71
//
Query:       CTQ30362.1  [L=79]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.6e-14   51.5   1.4    8.1e-14   51.4   1.4    1.0  1  FeoC         FeoC like transcriptional regulator
     0.0017   18.2   0.0      0.002   18.0   0.0    1.1  1  TrmB         Sugar-specific transcriptional regulator TrmB
  ------ inclusion threshold ------
      0.051   13.5   0.1      0.063   13.2   0.1    1.2  1  MarR_2       MarR family
      0.055   13.7   0.2      0.097   12.9   0.1    1.6  2  SelB-wing_2  Elongation factor SelB, winged helix


Domain annotation for each model (and alignments):
>> FeoC  FeoC like transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   1.4   1.8e-17   8.1e-14       1      65 [.       3      69 ..       3      77 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 1.8e-17
        FeoC  1 iLtelkeyleergrvslkeLsrhfkaspealeamLeqwvrkGrvekvaatacc..sgsCkkCggkee 65
                +L e+++ l+ +gr + k+Ls ++++ +  ++amLe ++++G+v +  +t++   sgsCk+C + + 
  CTQ30362.1  3 SLMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRISETSEGclSGSCKSCPEGKA 69
                699*****************************************98777665456*******97664 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.4e-07     0.002      17      58 ..      11      52 ..       6      63 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.4e-07
                HHHHCCCHHCHHCCCTTSSCHCHHHHHHHHHHCTSEEEESST CS
        TrmB 17 LlklgpatadeiaeelgvprskvYevLrsLedkGlVerekgr 58
                L  +g+++a++++ +l  p++ +  +L+++e +G V r+ ++
  CTQ30362.1 11 LALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRISET 52
                55799*******************************998775 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.4e-05     0.063      21      54 ..      16      49 ..       4      55 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
                EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2 21 dltvgelarrlglsksavsrilkrLvaaGLverr 54
                ++ +++l +rl+ +++ +  +l+r++a G v+r 
  CTQ30362.1 16 RMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49
                3789*************************98775 PP

>> SelB-wing_2  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   2.2e-05     0.097      22      50 ..      22      48 ..       6      52 .. 0.79
   2 ?   -2.4   0.0       1.3   5.8e+03      46      57 .]      67      78 ..      66      78 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.2e-05
                 HHHHCSSSS-HCCHHHHHHHHHHTTSEEE CS
  SelB-wing_2 22 Lrsrlaprlpaklfqallealvargilav 50
                 L  rl  + p++l++a+le+++a g++++
   CTQ30362.1 22 LSARL--QTPQPLIDAMLERMEAMGKVVR 48
                 33343..688****************986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
                 TSEEE-SSEEEE CS
  SelB-wing_2 46 gilavegdwvhL 57
                 g+ a +++w++L
   CTQ30362.1 67 GKAACRQEWWAL 78
                 777888999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 633.43
//
Query:       CTQ30363.1  [L=89]
Description: putative exported protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-18   65.8   0.1    3.5e-18   65.3   0.1    1.2  1  DUF1471   Protein of unknown function (DUF1471)
  ------ inclusion threshold ------
      0.037   14.4   0.1      0.045   14.1   0.1    1.2  1  DUF4156   Domain of unknown function (DUF4156)


Domain annotation for each model (and alignments):
>> DUF1471  Protein of unknown function (DUF1471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.1   3.9e-22   3.5e-18       1      56 []      36      89 .]      36      89 .] 0.96

  Alignments for each domain:
  == domain 1  score: 65.3 bits;  conditional E-value: 3.9e-22
                EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEEEE CS
     DUF1471  1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAelYK 56
                l+++g+i++s + +sp+d++++lskkAde G+ky+++++ ++ n+ ++ha+A++YK
  CTQ30363.1 36 LTKVGSITTS-RTTSPMDARRDLSKKADELGGKYFVVIAGQK-NEKTVHANADVYK 89
                79********.*****************************99.6667********9 PP

>> DUF4156  Domain of unknown function (DUF4156)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1     5e-06     0.045      34      88 ..      38      87 ..      27      89 .] 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5e-06
     DUF4156 34 wlsgiftsnkelvrgaandLrneAaalGgntivlvtstatetessqtdvtmlgqv 88
                ++  i ts +++  +a+ dL ++A +lGg + v++  ++ e+      v   ++v
  CTQ30363.1 38 KVGSITTSRTTSPMDARRDLSKKADELGGKYFVVIAGQKNEK-----TVHANADV 87
                5556788999999*****************977777663333.....34444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 680.00
//
Query:       CTQ30364.1  [L=257]
Description: carboxylesterase of pimeloyl-CoA synthesis [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-26   92.0   0.0    5.8e-26   91.7   0.0    1.0  1  Abhydrolase_1  alpha/beta hydrolase fold
      6e-15   56.4   7.4    7.4e-15   56.2   7.4    1.0  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.1e-10   41.2   0.1    2.4e-10   40.1   0.1    1.5  1  Hydrolase_4    Serine aminopeptidase, S33
    0.00081   19.6   0.0      0.001   19.3   0.0    1.1  1  Thioesterase   Thioesterase domain
     0.0038   17.0   0.0     0.0088   15.8   0.0    1.6  2  Abhydrolase_5  Alpha/beta hydrolase family
  ------ inclusion threshold ------
        0.2   11.4   0.0       0.27   10.9   0.0    1.2  1  PGAP1          PGAP1-like protein


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   0.0     2e-29   5.8e-26       2     256 ..      15     241 ..      15     242 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 2e-29
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGG CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyper 97 
                    +lv+lhG++ ++ vw +  + p La  +f+++l+Dl+G+g+S          +g +s++++ +r+l++ + + + ++G+S+GG++a+++a + per
     CTQ30364.1  15 HLVLLHGWGLNAQVWDC--ITPQLAS-HFTLHLVDLPGYGRS--------GGFGAMSLEAMAQRVLEQAPPQAV-WLGWSLGGLVASQVAIMRPER 98 
                    69***************..******9.***************........88999***************9999.9******************** PP

                    EEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHHH CS
  Abhydrolase_1  98 Vkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksieqwp 193
                    V+alv++++ +p+++ +++++ + + +   f++   d+++ +  ++la +   +e+          ++ ++ +++     ++ +a    + +e   
     CTQ30364.1  99 VQALVTVAS-SPCFAARDDWPGIKPEVLAGFQQQLSDDFQRTVERFLALQTMGTESA---------RQDARALKQAVLSLPMPSAEALNGGLEILR 184
                    *********.***********************************************.........999*************************** PP

                    HCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 194 ttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafleg 256
                    t d ++ l rl +      p l ++g+ D+lvp k    l++l+p+++ + +++a H  f  +
     CTQ30364.1 185 TVDLRQALVRLPM------PFLRLYGRLDGLVPRKIVPLLDDLWPESESILFDKAAHAPFVSH 241
                    *************......**************************************999876 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   7.4   2.5e-18   7.4e-15       1     218 [.      16     246 ..      16     247 .. 0.61

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 2.5e-18
                    EEEE--GC.....GCHHHHHHHHCCTCEEEEE--TTSTS-GGCS--HHH..CHHH.HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC....... CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaagvhvlapDlpGhGrsdpppldled..ladl.aalldelaagggpvvlvGHSlGGalalaaapla.....lv 88 
                    ++llHG g++a +W    + + la++++ + +DlpG+Grs     ++ +  l++   ++l+     ++++v +G+SlGG++a++   +a     +v
     CTQ30364.1  16 LVLLHGWGLNAQVWD--CITPQLASHFTLHLVDLPGYGRS----GGFGAmsLEAMaQRVLEQA---PPQAVWLGWSLGGLVASQ---VAimrpeRV 99 
                    79******999***7..777777***999*********66....5554422677744455555...7899**************...777768855 PP

                    EE.EEES-...----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHHC.....CCCHCHCCCGHH....HHCC......HHC....HTTC CS
  Abhydrolase_6  89 vg.vlldppp.talpagllaaalelllallallrllawlsreplprlfladeda.....daawrarlarla....alla......glg....llpa 163
                     + v +++ p  a++++++   +e+l+++ + l +  + +     ++fla  ++     +++ ra  ++++    +  +      gl+       +
     CTQ30364.1 100 QAlVTVASSPcFAARDDWPGIKPEVLAGFQQQLSD-DFQR---TVERFLALQTMgtesaRQDARALKQAVLslpmP--SaealngGLEilrtVDLR 189
                    55788888665455555544444444444443333.3332...222333322211111111111111111122221..022222222232223336 PP

                    CHHTT-TTGCEEE.CTT-CHHHHCHHCCCH..STTEEETCE...SSS-HHHHSHHHHH CS
  Abhydrolase_6 164 aawadlpvpllvl.ggeDplvprllerlla..qagarlpvvlpgaGHlphleepdeva 218
                    +a+ +lp+p+l l g  D lvpr +  ll   ++  +  +++  a H+p+ ++p+++ 
     CTQ30364.1 190 QALVRLPMPFLRLyGRLDGLVPRKIVPLLDdlWPESES-ILFDKAAHAPFVSHPAAFC 246
                    68888888886665799**9997777777776677777.89*************9986 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.1     8e-14   2.4e-10       6     209 ..      15     213 ..      11     239 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 8e-14
  Hydrolase_4   6 vvvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdkvag 103
                   +vl+HG +  ++  + ++ +La + f  + +D  G+Grs g  g           l+a+ ++v e+ p +  ++lG S+GGl+a +++ ++p++v++
   CTQ30364.1  15 HLVLLHGWGLNAQVWDCITPQLASH-FTLHLVDLPGYGRS-GGFG--------AMSLEAMAQRVLEQAPPQ-AVWLGWSLGGLVASQVAIMRPERVQA 101
                  589*******************986.**************.6667........345788888888877777.799**********************8 PP

  Hydrolase_4 104 li..lsaPalkikakl.....k.appllklllkllgkllpklqvsnnlkadslsrdpevvaayeadplvhgkitvrlllelldamkrleeraakit.. 191
                  l+   s+P ++ + ++     + +  +++ l+  +++++ ++     l++    + ++  +a+++  l   +++++ l++ l+++ ++  r+a ++  
   CTQ30364.1 102 LVtvASSPCFAARDDWpgikpEvLAGFQQQLSDDFQRTVERFLA---LQTMGTESARQDARALKQAVLSLPMPSAEALNGGLEILRTVDLRQALVRlp 196
                  8622688******9994443323333333344444555555554...5566666666667788888888****************9999999999866 PP

  Hydrolase_4 192 lPllllhGeaDkvvdpea 209
                  +P+l l+G  D +v++ +
   CTQ30364.1 197 MPFLRLYGRLDGLVPR-K 213
                  779**********984.3 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.3e-07     0.001       2     213 ..      15     236 ..      14     250 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 3.3e-07
                   EEEEE--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST.SHHHCTTCHHHHHHHHHHHHHHH-SSSSEEEEEETHHHHHHHHHHHHHHHCT-SEEEE CS
  Thioesterase   2 pLflfppagGsasvfrslasklsdpvvevlavqlpgre.rdepplesieelaaeyaealrqiqpegPyalfGhSlGgllAfevArqLesqGlavksl 97 
                   +L+l+++ g +a+v   +  +l +    ++ v lpg++ ++   + s+e++a++++e+     p+   +  G+SlGgl+A +vA     + + v++l
    CTQ30364.1  15 HLVLLHGWGLNAQVWDCITPQLASH-FTLHLVDLPGYGrSGGFGAMSLEAMAQRVLEQA---PPQ--AVWLGWSLGGLVASQVAI---MRPERVQAL 102
                   7888888888888888888899996.999999999998666666777777777765543...333..4559************97...58999**** PP

                   EEESCCCCCCHHCHHCCCHTTHHT.HHHHHC.CTTHHHCCTTTHCCHHHHHHHHHHHHHHHHHTCCS-TTSCSEHHCEEEEEEGSS-CTCCCCCCCH CS
  Thioesterase  98 flidssapseteaqeasrraedee.fveelt.dlggtepeelledeellsellpalradyraleqyslrpeaaqklratlfngsddklkdldtlela 192
                   + ++ss+ +    ++   ++e  + f ++l  d++ t +e++l+ +   ++ ++ +r d+ral+q+   ++ ++  +a+ +ng  + l ++d  +  
    CTQ30364.1 103 VTVASSPCFAARDDWPGIKPEVLAgFQQQLSdDFQRT-VERFLALQ---TMGTESARQDARALKQA-VLSLPMP--SAEALNGGLEILRTVDLRQA- 191
                   ********99888999999998888777775145666.99999999...999*************9.8888888..77777777777777773333. PP

                   CH.........................CHCTCESCEEEEEESSHCC CS
  Thioesterase 193 er.........................weqktsgevsvhvlegdhf 213
                                              +++ +++  s+ ++++ h+
    CTQ30364.1 192 -LvrlpmpflrlygrldglvprkivplLDDLWPESESILFDKAAHA 236
                   .233666666666666666666666666666666666666666665 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     3e-06    0.0088      45      92 ..      64     110 ..      57     131 .. 0.84
   2 ?   -2.8   0.0       1.6   4.7e+03     100     117 ..     196     213 ..     189     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3e-06
  Abhydrolase_5  45 kaeeiikeapklekfvvgGhslGGvvasrfaaee.ekiegvvflasYPe 92 
                     a+ ++++ap +   v  G slGG vas++a    e+++++v +as P 
     CTQ30364.1  64 MAQRVLEQAPPQ--AVWLGWSLGGLVASQVAIMRpERVQALVTVASSPC 110
                    588999999964..5778*************96548**********994 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.6
  Abhydrolase_5 100 skkvlsivgteDgvlnvk 117
                     ++ l ++g  Dg+++ k
     CTQ30364.1 196 PMPFLRLYGRLDGLVPRK 213
                    578899999999998765 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.9e-05      0.27      88     129 ..      71     110 ..      61     153 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.9e-05
       PGAP1  88 keptsviliGHSmGGivaraaltlknyikqsvntiltla.sPh 129
                 + p + + +G S+GG+va  +++++   ++ v+ ++t+a sP 
  CTQ30364.1  71 QAPPQAVWLGWSLGGLVASQVAIMR---PERVQALVTVAsSPC 110
                 556677789*********7776654...6899****9985775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2075.29
//
Query:       CTQ30365.1  [L=224]
Description: gluconate periplasmic binding protein with phosphoribosyltransferase domain, GNT I system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-06   26.3   0.0      7e-06   25.6   0.0    1.2  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.025   14.1   0.0      0.034   13.6   0.0    1.2  1  PRTase_2      Phosphoribosyl transferase
      0.033   13.6   0.0      0.048   13.1   0.0    1.2  1  UPRTase       Uracil phosphoribosyltransferase
       0.13   12.6   0.0       0.21   12.0   0.0    1.2  1  Atu4866       Agrobacterium tumefaciens protein Atu4866
        1.1    9.3  10.7        2.1    8.4   2.8    2.3  2  DZR           Double zinc ribbon


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0     2e-09     7e-06      71     124 ..     167     221 ..     146     223 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2e-09
                   E.........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEEEEEEE CS
  Pribosyltran  71 aargssdes.rlledpagkkVliVDDildtGgTllaalelLkekgpeevriavlv 124
                   + r++ ++  +l+  + g ++ +VDD+++tG+T+ ++ +lL + g++ v + +l+
    CTQ30365.1 167 QRRQNLKNAfQLEFAVQGLHIALVDDVVTTGSTVAEISRLLLRNGAATVQVWCLC 221
                   33333333367999999*********************************99998 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.5e-06     0.034     118     147 ..     181     210 ..     154     221 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.5e-06
    PRTase_2 118 laaakelvLvDDEistGktalnliralqek 147
                   +  ++ LvDD ++tG+t++++ r l ++
  CTQ30365.1 181 AVQGLHIALVDDVVTTGSTVAEISRLLLRN 210
                 33457899**************99987665 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.3e-05     0.048     109     157 ..     172     220 ..     150     222 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
     UPRTase 109 veyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvl 157
                      +L + ++  ++ l+D v+ TG+++a++ +lL+++g+ + ++ +l
  CTQ30365.1 172 LKNAFQLEFAVQGLHIALVDDVVTTGSTVAEISRLLLRNGAATVQVWCL 220
                 344557888889999***********************99988887766 PP

>> Atu4866  Agrobacterium tumefaciens protein Atu4866
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.9e-05      0.21      11      53 ..     155     193 ..     147     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.9e-05
     Atu4866  11 edgrirqeLladgRYdEaRgeresAyqGryevtgdeidYlDDt 53 
                 + g +++ L a  R    R + ++A+q  + v+g +i+ +DD+
  CTQ30365.1 155 RAGAVQHSLNARQR----RQNLKNAFQLEFAVQGLHIALVDDV 193
                 56778888888776....8999********************6 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  10.5    0.0035        13       1      48 [.       8      54 ..       2      55 .. 0.68
   2 ?    8.4   2.8    0.0006       2.1       1      23 [.      37      59 ..      37      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0035
         DZR  1 CpqCgeelp.pdarfCseCgtklkavaaedrCpsCgekvdpearfCpeC 48
                C  C+ +l  ++   Cs+C  +l   a +  Cp+Cg ++ +    C+ C
  CTQ30365.1  8 CWLCQMPLAvARWGICSRCSRALL--ACPPLCPQCGLPAAASRHPCGRC 54
                445555533144457777777774..34788888888888888888888 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0006
         DZR  1 CpqCgeelppdarfCseCgtklk 23
                CpqCg +  ++ + C++C +k++
  CTQ30365.1 37 CPQCGLPAAASRHPCGRCLQKPP 59
                99*****999999****999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1746.30
//
Query:       CTQ30366.1  [L=101]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       188  (0.0104858); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 756.13
//
Query:       CTQ30367.1  [L=191]
Description: Fe/S biogenesis protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-20   72.7   0.0    3.2e-20   72.1   0.0    1.4  1  NifU         NifU-like domain
    3.5e-13   49.7   0.0    8.6e-13   48.5   0.0    1.6  2  Fe-S_biosyn  Iron-sulphur cluster biosynthesis
  ------ inclusion threshold ------
       0.16   11.6   0.0       0.26   10.9   0.0    1.3  1  Cas_Csn2     CRISPR-associated protein (Cas_Csn2)


Domain annotation for each model (and alignments):
>> NifU  NifU-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   5.3e-24   3.2e-20       1      66 [.     111     177 ..     111     178 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 5.3e-24
                 HHHHHHH.HGGG--GG--EEEEEEEETT.EEEEEEESGGGG-....THHHHHHHHHHHHH-TT--EE CS
        NifU   1 ieevleeeirPaLasdGGdielvdvdeg.vVkvrlqGaCsgCpsstvtlkegiekaLkeevpevkeV 66 
                 +e +l+++i+P+La++GG ++l++++++    +++ G+C+gC++ +vtlkegiek+L +e+pe k V
  CTQ30367.1 111 VEYLLQSQINPQLAGHGGRVSLMEITDDgLAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPELKGV 177
                 799**********************99968889*******************************998 PP

>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   1.4e-16   8.6e-13       3     105 ..       2      98 ..       1     101 [. 0.92
   2 ?   -2.4   0.0      0.91   5.4e+03      28      41 ..     135     150 ..     116     160 .. 0.57

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 1.4e-16
                  EEE-HHHHHHHHHHHHCTTEC..EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEEE CS
  Fe-S_biosyn   3 itlteaAaeklkkllaedkke..lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLks 98 
                  i +++aA++++ klla++++   +r++v + g+p  +  C  g +y+        e+ d+ l+ ++++ yv++ s+++l e+ ++dfv+d+ +++L+ 
   CTQ30367.1   2 IRISDAAQAHFAKLLANQEEGtqIRVFVINPGTPNAE--C--GVSYCPPDAV---EDTDTALKFEQLTAYVDELSAPYL-EDAEIDFVTDQLGSQLTL 91 
                  99***************988889*********99999..9..6888877665...569*********************.89**************** PP

                  ETCCEEE CS
  Fe-S_biosyn  99 dngildd 105
                  ++++++ 
   CTQ30367.1  92 KAPNAKM 98 
                  ****996 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.91
                  EECCTSCCGG.S..TT CS
  Fe-S_biosyn  28 vddgggpysk.gg.Cs 41 
                  + d+g    + gg C+
   CTQ30367.1 135 ITDDGLAILQfGGgCN 150
                  3344446666666676 PP

>> Cas_Csn2  CRISPR-associated protein (Cas_Csn2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.3e-05      0.26      56     117 ..      53     115 ..      47     120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHSSS-----.---HHHHHHHHT-----TT-S..HHHHHHHHH CS
    Cas_Csn2  56 evkstiekltakieelieqelleseldleydeeldilellKalgikietqsde..lfekiieyi 117
                     + e+lta++ el +  l++ e+d+  d +l  +  lKa + k+ + sd+  l+e++  ++
  CTQ30367.1  53 DTALKFEQLTAYVDELSAPYLEDAEIDFVTD-QLGSQLTLKAPNAKMRKVSDDapLMERVEYLL 115
                 55667899***********************.*******************9999999986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1557.55
//
Query:       CTQ30368.1  [L=438]
Description: gluconate transporter, high-affinity GNT I system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.5e-185  615.5  43.1   5.1e-185  615.3  43.1    1.0  1  GntP_permease    GntP family permease
    6.2e-29  101.1  39.4    9.1e-29  100.6  39.4    1.2  1  CitMHS           Citrate transporter
    6.8e-05   22.2  17.8    6.8e-05   22.2  17.8    2.4  2  Na_H_antiporter  Na+/H+ antiporter family
     0.0088   16.3   0.8       0.04   14.2   0.8    2.2  1  DUF3007          Protein of unknown function (DUF3007)
  ------ inclusion threshold ------
      0.016   15.3  26.4       0.02   15.0  10.6    3.5  3  Na_H_antiport_2  Na+-H+ antiporter family
       0.29    9.4   2.7       0.58    8.4   2.7    1.4  1  SpecificRecomb   Site-specific recombinase


Domain annotation for each model (and alignments):
>> GntP_permease  GntP family permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  615.3  43.1  1.7e-188  5.1e-185       1     440 []       1     437 [.       1     437 [. 0.99

  Alignments for each domain:
  == domain 1  score: 615.3 bits;  conditional E-value: 1.7e-188
  GntP_permease   1 lpllivligvilllllviklklnafvaLllvsllvglvsGmpldkvvksiekGlGgtlGslaiiiglGamlGklledsGaaerialtlikklgkkk 96 
                    +pl+iv+igv+lllll+i++k+n+f+aL+lv+l+vgl++Gmpldkv+ si++G+GgtlGsla+i+g+GamlGkll+d+G+a+ria+tli+k+gkk+
     CTQ30368.1   1 MPLVIVAIGVALLLLLMIRFKMNGFIALVLVALAVGLMQGMPLDKVIVSIKNGVGGTLGSLALIMGFGAMLGKLLADCGGAQRIATTLINKFGKKH 96 
                    79********************************************************************************************** PP

  GntP_permease  97 vqwalvlagfivgialFfevglvlLiplvfaiakeakisllklgiplvaalavvhgllpPhPgplavaellgadiGkvllyGlivaiptviiagpl 192
                    +qwa+vl+gf+vg+alF+evg+vl++plvf+ia++a+i+ll++g+p++aal+v+hg+lpPhPgp+a+a++++ad+Gk+llyG+i+aiptvi+agp+
     CTQ30368.1  97 IQWAVVLTGFTVGFALFYEVGFVLMLPLVFTIAASARIPLLYVGVPMAAALSVTHGFLPPHPGPTAIATIFHADMGKTLLYGTILAIPTVILAGPV 192
                    ************************************************************************************************ PP

  GntP_permease 193 lkkflkevvkeeeelaeeaeeksreekelPsfglslltillPvvlmlvktiaelllpkesaalevvefiGnpvvalliallvaiytlglrrgksik 288
                    +++flk + k  +e     + k++ e+e+P+fg+s++t+l+Pv+lm+++++ae++lpk++a+l + ef G+pv+a lia+l+a++t+gl+rg+s++
     CTQ30368.1 193 FARFLKGIDKPIPE--GLHNPKVFTEEEMPGFGVSVWTSLVPVILMAMRAVAEMILPKGHAFLPIAEFFGDPVMATLIAVLIALFTFGLNRGRSME 286
                    ***********999..7899**************************************************************************** PP

  GntP_permease 289 kvldileealksiaiilliigaGGafkqvlvdsgvgkalaellsnlelspillaflvaallrialGsatVaaltaaglvapiiaqlpgvnlallvl 384
                    +++d+l +++k ia++lliig+GGafkqvlvdsg++k++a+++++ ++sp+++a+ +aa+lrialGsatVaa+ta+g+ ap+ia++ gv+++l+v+
     CTQ30368.1 287 QINDTLTSSIKIIAMMLLIIGGGGAFKQVLVDSGMDKYIASIMHESNMSPLFMAWSIAAVLRIALGSATVAAITAGGIAAPLIATT-GVSPELMVI 381
                    ************************************************************************************99.********* PP

  GntP_permease 385 aigaGslilshvnDagFWlvkeylgltvketlktwtvletilsvvgliivlllslv 440
                    a+g+Gs+i+shvnD+gFWl+key++lt+ et+k+w+vleti+sv+gl+ +lll +v
     CTQ30368.1 382 AVGSGSVIFSHVNDPGFWLFKEYFNLTIGETIKSWSVLETIISVCGLVGCLLLGMV 437
                    ***************************************************99876 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6  39.4     3e-32   9.1e-29       3     300 .]      14     384 ..      11     384 .. 0.86

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 3e-32
                 xxxxxx......xxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS   3 llilek......lrldvvallvlvll.......vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrdllvllvlltallsaf 88 
                 ll++ +      ++l +val v+++        +++i+  + g   +++l+++++ ++g++l+++G+++r+a++l++++g+k  + +++vl+ + + +f
  CTQ30368.1  14 LLLMIRfkmngfIALVLVALAVGLMQgmpldkvIVSIKNGVGGTLGSLALIMGFGAMLGKLLADCGGAQRIATTLINKFGKKH-IQWAVVLTGFTV-GF 110
                 5555556566667777777766555599999999999999999999999*******************************954.6***********.89 PP

                 xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxx...................... RF
      CitMHS  89 vsn.dgvvlimipivlslakrlkklppllliplalaaniggaltpiGtpttraa........arpglslpnllllal...................... 156
                 + +  + +++m+p+v+++a++ +++p+l+   +++++++  ++t+ + p+++++        a++g++l+++ +la+                      
  CTQ30368.1 111 ALFyEVGFVLMLPLVFTIAAS-ARIPLLY---VGVPMAAALSVTHGFLPPHPGPtaiatifhADMGKTLLYGTILAIptvilagpvfarflkgidkpip 205
                 9898999*************7.******9...******************************************9996666777777777777777777 PP

                 ....................xxxxxxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 157 ....................llvgllplvllfmfgvalalpvnap..............................kvkkqkaiieaiarsllpvatill 205
                                     + + l+p++l++m +va +++++ +                              +++++++i +++++s++ +a++l 
  CTQ30368.1 206 eglhnpkvfteeempgfgvsVWTSLVPVILMAMRAVAEMILPKGHaflpiaeffgdpvmatliavlialftfglnRGRSMEQINDTLTSSIKIIAMML- 303
                 7777777777777777777677777****************************************************************999888888. PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.x.xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
      CitMHS 206 laykkveWsvlllfaGvfllvgaleqtGilealadll.ga.g.gplvalalvlglial.lsafisnvavaalmapialgmap..algllspsplalala 298
                            l+++G + + ++l ++G+ +++a+++ ++ + ++++     ++ ia+ l++++++++vaa++a ++++  p  a  +  +sp ++++a
  CTQ30368.1 304 -----------LIIGGGGAFKQVLVDSGMDKYIASIMhESnMsPLFM-----AWSIAAvLRIALGSATVAAITAGGIAA--PliA--TTGVSPELMVIA 382
                 ...........677777777*****************5556336655.....7888888********************..6433..335777788888 PP

                 xx RF
      CitMHS 299 vg 300
                 vg
  CTQ30368.1 383 VG 384
                 87 PP

>> Na_H_antiporter  Na+/H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3  14.0      0.66     2e+03     104     213 ..       4     110 ..       1     155 [. 0.70
   2 !   22.2  17.8   2.3e-08   6.8e-05     118     256 ..     258     392 ..     160     394 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.66
  Na_H_antiporter 104 alvaivkafivalafqntdvatalvvgalaglivatllelaslseidkllnrG.iksmlgaililllAwgiggvlealgvteslvsslakgvvs 196
                      ++vai++a++++l+++   +  +++ + l++l+v ++ ++ +l+++  +++ G   +   + li+ +++ +g++l + g+ +++ ++l +++ +
       CTQ30368.1   4 VIVAIGVALLLLLMIRFK-MN-GFIALVLVALAVGLMQGM-PLDKVIVSIKNGvGGTLGSLALIMGFGAMLGKLLADCGGAQRIATTLINKFGK 94 
                      677888888888887643.22.333355555666666665.99**********5555555667888**************************75 PP

  Na_H_antiporter 197 kgllplilflvallvaf 213
                      k+   ++ +l+++ v f
       CTQ30368.1  95 KHIQWAV-VLTGFTVGF 110
                      5544433.344444444 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 2.3e-08
  Na_H_antiporter 118 fqntdvatalvvgalaglivatllelaslseidkllnrGiksmlgaililllAwgiggvlealgvteslvsslakgv.vskgllplilflvall 210
                      f + d ++a +++ l++l ++ l++ +s+++i+++l+  ik+ ++++li+  + ++++vl + g  +++++s++  +  s+++++     +a++
       CTQ30368.1 258 FFG-DPVMATLIAVLIALFTFGLNRGRSMEQINDTLTSSIKIIAMMLLIIGGGGAFKQVLVDSG-MDKYIASIMHESnMSPLFMAW---SIAAV 346
                      333.33445555788888888888888*************************************.*********999888888876...57999 PP

  Na_H_antiporter 211 vafatGtswgtigIilpiavplaaklgisllalvraveaggtlgdh 256
                        +a G+ +++ +  + ia+pl a +g+s+  +v av++g+++ +h
       CTQ30368.1 347 LRIALGSATVAAITAGGIAAPLIATTGVSPELMVIAVGSGSVIFSH 392
                      ******************************************9988 PP

>> DUF3007  Protein of unknown function (DUF3007)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.8   1.3e-05      0.04       4      64 ..     296     356 ..     293     361 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
     DUF3007   4 idvlaiglgvlllgglaylvlqalGldslsagiwsqavlvlglvgWvltYllRvvtkkmTy 64 
                 i+++a+ l ++  gg+  +vl   G+d+  a+i+ ++ +    ++W ++ +lR++ ++ T 
  CTQ30368.1 296 IKIIAMMLLIIGGGGAFKQVLVDSGMDKYIASIMHESNMSPLFMAWSIAAVLRIALGSATV 356
                 78999999999999*****************************************999986 PP

>> Na_H_antiport_2  Na+-H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0  10.6   6.5e-06      0.02       3      65 ..       4      69 ..       3      93 .. 0.73
   2 ?   10.0   1.1   0.00024      0.73      22      83 ..     264     329 ..     261     333 .. 0.63
   3 ?   -1.3   0.8      0.83   2.5e+03      26      77 ..     356     366 ..     338     384 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.5e-06
  Na_H_antiport_2  3 vviavlvmlvLsll.r..vnvvlallisalvgGlvgglsleetieafasGlggga.evAlsyallGa 65
                     v++a+ v+l+L l+ r  +n  +al++ al+ Gl+ g++l+++i  +++G+gg   + Al     Ga
       CTQ30368.1  4 VIVAIGVALLLLLMiRfkMNGFIALVLVALAVGLMQGMPLDKVIVSIKNGVGGTLgSLALIMG-FGA 69
                     899999988777643444899******************************998624565442.333 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00024
  Na_H_antiport_2  22 lallisalvgGlvgglsleetieafasGlgggae.vAlsyall...GafAvaisksgltdllvkkv 83 
                      +a li+ l++ ++ gl+    +e++++ l ++ + +A++++++   Gaf  ++  sg+ +++++ +
       CTQ30368.1 264 MATLIAVLIALFTFGLNRGRSMEQINDTLTSSIKiIAMMLLIIgggGAFKQVLVDSGMDKYIASIM 329
                      455555555555555555555555666665555523555555522279************999865 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.83
  Na_H_antiport_2  26 isalvgGlvgglsleetieafasGlgggaevAlsyallGafAvaisksgltd 77 
                      ++a                                         i+  g++ 
       CTQ30368.1 356 VAA-----------------------------------------ITAGGIAA 366
                      222.........................................22222222 PP

>> SpecificRecomb  Site-specific recombinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.7   0.00019      0.58     331     380 ..      79     130 ..      66     131 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00019
  SpecificRecomb 331 ggGliialtallKillaklhlapfvegllas..lnYalsFvlihllhftvAT 380
                     gg   ia t + K+  ++++ a +++g++++  l Y ++Fvl+  l ft+A+
      CTQ30368.1  79 GGAQRIATTLINKFGKKHIQWAVVLTGFTVGfaLFYEVGFVLMLPLVFTIAA 130
                     344458999999****************9873368***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 3630.78
//
Query:       CTQ30369.1  [L=697]
Description: 4-alpha-glucanotransferase (amylomaltase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.1e-133  445.6   0.1   2.9e-133  445.2   0.1    1.1  1  Glyco_hydro_77  4-alpha-glucanotransferase
  ------ inclusion threshold ------
      0.037   14.3   0.2      0.082   13.3   0.2    1.5  1  DUF1330         Domain of unknown function (DUF1330)


Domain annotation for each model (and alignments):
>> Glyco_hydro_77  4-alpha-glucanotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  445.2   0.1  3.2e-137  2.9e-133       1     466 [.     149     666 ..     149     668 .. 0.95

  Alignments for each domain:
  == domain 1  score: 445.2 bits;  conditional E-value: 3.2e-137
                     E-GGGSB-SSSSSS--SSHHHHHHHHHHHTT--EEEES--SE....ST..--TTS-SESSSE-GGGS-CHG.HHH............HHHHHTTS CS
  Glyco_hydro_77   1 lplsSLrskksyGiGdlgdlkefvdflakagqklwqilPlndt...ep.dtsPYsslSafalnplyidlealpel............aelaeegl 79 
                     ++l++Lrs+k++GiGd+gdl+ ++  +a+ g ++++++P++++   +p ++sPYs++S+++ln++yid++a++++            ++++++++
      CTQ30369.1 149 VQLYTLRSEKNWGIGDFGDLRAMLPEIARRGGSFIGLNPIHALypaNPeSASPYSPSSRRWLNVIYIDVNAVEDFqrseeaqawwqsPATQQALQ 243
                     699****************************************87755355***************************99999998544555555 PP

                     SHGGGSSB--HHHHHHHHHHHHHHHHHTHHH.HHSHHHHHHHHHHHHHHHHHHHHHHHHHH.....HHHCT-SSGGGS-HHHHTTTHHHHHHHHH CS
  Glyco_hydro_77  80 lakeelervdyekvielklkllrkaferfkekkkakeskefeeFveenaewledyalFmal.....kekfegaswseWpeelrkrkeealekakk 169
                     +a +e+++vdy++v++lk+++lr a+++f++ +++++ ++f+eFv +++e l  +a+F+al     +++  ++ w  Wp+++++ ++ +++++  
      CTQ30369.1 244 AA-RETDDVDYTAVTTLKMTALRMAWKQFSR-REDEQMTAFREFVLREGESLYWQAAFDALhawqvQQDPLRWGWPAWPKAFQDIDSPEVKAFCV 336
                     44.5559********************9986.6666999**********************88877777778*********************** PP

                     HTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEE..EEEESS--SSSHHHHHCGGGB-BTTTSEESSBSSSTT-EEEEEE-B-HHHHHHTTTHH CS
  Glyco_hydro_77 170 elaeeiefykflQylfdkqlkelkeyanekgieli..gDlpigvardSadvWanpelFkldesaGaPPDafsatGQnWgnPlynweelekdgyaw 262
                     e++++++fy +lQ+l+ +q++++ e+ ++ g+ ++  +Dl++gva+ ++++W+++el++l++s+GaPPD + + GQnWg+P+++++ +++++y++
      CTQ30369.1 337 EHEDDVSFYLWLQWLAWSQFAACWETSQRDGMPIGlyRDLAVGVAEGGSETWCDRELYCLKASVGAPPDILGPLGQNWGLPPMDPHIIAARAYEP 431
                     **********************************999********************************************************** PP

                     HHHHHHHHHTT-SEEEETTGGGGTEEEEEETT-SSCTC-EEEE--HHHHHHHHHHHHHHCT-EEEE---SS--HHHHHHHHHTT-BEEEEGGGTT CS
  Glyco_hydro_77 263 wikrlraalklfdalRIDHvlGffrlWeipaeektalngeyvkypgeelfevlkeelqkgkllviaEDLGvvpdevrelleelgilgmkvlqfaf 357
                     +i++lra+++ ++alRIDHv++  rlW+ip++ +ta +g+yv+yp+++l+++l+ e+q+++++vi+EDLG+vp e+ + l+++g++++kvl+f+ 
      CTQ30369.1 432 FIDLLRANMQNCGALRIDHVMSVLRLWWIPYG-ETADHGAYVQYPVDDLLSLLALESQRHRCMVIGEDLGTVPVEIVSKLRNSGVYSYKVLYFES 525
                     *******************************9.9************************************************************* PP

                     STTTT.TTSGGGS-SSEEEES--TTS--HHHHHT.......................HHHHHHHHHHHHHHHHTT.........CC..S-GGGHH CS
  Glyco_hydro_77 358 edeenefylphnypensvvytgtHDndtlrgwwe.......................eerakekealleylkeeg.........pe..eaeeeiv 418
                     + e+ +f++p+ ype+s+++ +tHD++tlrg+we                       ++r+ +k+ ll++l++ g          +  +++  ++
      CTQ30369.1 526 DAEK-TFRAPALYPEQSMAVATTHDLPTLRGYWEsgdltlgkalglypdevvlrglyQDRELAKQGLLDALHKYGclpkraghkASlmSMTGILN 619
                     7777.5**************************************************989999*********9999**9998875116699999** PP

                     HHHHHHHHHSSSSEEEEEHHHHTTTGGG-S--TT-SSSSTTS-B--SS CS
  Glyco_hydro_77 419 ealirlalasvaklailplqDlllgeeeriNvPgtveeepnWrwrlkl 466
                     + + r++++s+++l+ l+ +D+ l+++  +N+Pgt++e+pnWr++l++
      CTQ30369.1 620 RGMQRYIADSNSALLGLQPEDW-LEMATPVNIPGTSTEYPNWRRKLSV 666
                     **********************.**********************986 PP

>> DUF1330  Domain of unknown function (DUF1330)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   9.1e-06     0.082      55      92 ..     220     257 ..     216     259 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.1e-06
     DUF1330  55 vieFpsveaarawyeSpeYqaakalRqaaaeadlvlve 92 
                 v  F+  e+a+aw++Sp+ q+a+++ +++ ++d + v 
  CTQ30369.1 220 VEDFQRSEEAQAWWQSPATQQALQAARETDDVDYTAVT 257
                 667999*********************99999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 5182.25
//
Query:       CTQ30370.1  [L=796]
Description: maltodextrin phosphorylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
          0 1038.3   0.0          0 1038.1   0.0    1.0  1  Phosphorylase  Carbohydrate phosphorylase


Domain annotation for each model (and alignments):
>> Phosphorylase  Carbohydrate phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1038.1   0.0         0         0       2     710 ..      93     793 ..      92     794 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1038.1 bits;  conditional E-value: 0
                    HCTT--HHHHHTTS--ECESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTCCG-TT-EE-GGG-EEEEESCEEEC CS
  Phosphorylase   2 kelgldleeleeqeedagLGnGGLGRLAacfldslatlelpavGygirYeyGlFkQkiedgaqveepdeWlkkgnpweiereekavevkfggkvee 97 
                    k ++++l++l+e+e+d++LGnGGLGRLAacflds+at++ +a+Gyg++Y+yGlF+Q+++dg+q+e+pd+W +++ pw  ++e   v+v +ggkv++
     CTQ30370.1  93 KGYDVNLTDLLEEETDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFDDGQQMEAPDDWGRSSYPWFRHNEALDVQVGIGGKVSK 188
                    66899***************************************************************************************9987 PP

                    CTTE...ESEEESCEEEEEEEEEEEEE-SSSS-EEEEEEEEEE-STTTTHHCCCTTSCCHHHHCHHHHHGGGTBSS-SSSSCCHCHHHHHHHHHHH CS
  Phosphorylase  98 eeeeeklkvkwvdeeevlavpydvpvvGyktktvntLrLwsakaseefdleafnegdyikaveekneaeniskvLYPndsteegkeLrLkQqYflv 193
                    +        +w+++  +++ ++d+pv Gy++++++ LrLw+ak+++ f+l++fn+gd+ +a ++  +ae+++kvLYPnd++++gk+LrL+QqYf +
     CTQ30370.1 189 N-------GEWQPAFVITGEAWDLPVLGYRNNVAQPLRLWQAKHAHPFNLTKFNDGDFLRAEQQGIDAEKLTKVLYPNDNHQAGKKLRLMQQYFQC 277
                    3.......47************************************************************************************** PP

                    HHHHHHHHHHHHTCTTHGGGHHHHEEEEEESSTTTTHHHHHHHHHHHCC---HHHHHHHHCCCEEEEE--SSGGGS-EEEHHHHHHHSHHHHHHHH CS
  Phosphorylase 194 saslqdilrrfkkkkkdleelpekvaiqlnDtHPalaipelmriLvdeeglewdeaweitkktfaytnhtvlpealekwpvellekllprhleiie 289
                    ++s+ dilrr++   ++l el+++ +iqlnDtHP++aipel+r+L+de++l+wd+aw+it+ktfaytnht++peale+w+ +l++ llprh++ii+
     CTQ30370.1 278 ACSVADILRRHHLAGRKLAELADYEVIQLNDTHPTIAIPELLRVLIDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKALLPRHMQIIK 373
                    ************9999******************************************************************************** PP

                    HHHHHHHHHHHHHSTT-HHHHHHHSSEETSCEEEHHHHHHHCCSEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-CHHHCCCTSHHHHHH CS
  Phosphorylase 290 einerfleevekklpedeeklerlsiieeekkvrmanlaivgshsvngvaalhsellkkevlkdfyelypekfnnktnGitprrwlllanpelael 385
                    ein+rf++ v+k++p+d++ +++l++++ +k+vrman+++vg+++vngvaalhs+l+ k+++ ++++l+p+kf+n+tnGitprrw++++np+la+l
     CTQ30370.1 374 EINDRFKQLVDKTWPGDKQVWAKLAVVH-DKQVRMANMCVVGGFAVNGVAALHSDLVVKDLFPEYNQLWPNKFHNVTNGITPRRWIKQCNPALASL 468
                    ****************************.9****************************************************************** PP

                    HHHHCSSGGCCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTS-- CS
  Phosphorylase 386 itekigeewvkdleeLkkLekladdkefleelaeikqenKerlaelikekegvevdpeslfdvqvkRlheYkRqlLnvLhiitlYneikenpekkv 481
                    ++e++++ew +dl++L +Lek+add++f++++++ikq+nK +lae++k+++g+e++p+++fd+q+kRlheYkRq+Ln+Lhi++lY+ei+enp+++ 
     CTQ30370.1 469 LDETLKKEWANDLDQLINLEKYADDAAFRQTYRDIKQANKVHLAEFVKQRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQSDR 564
                    ************************************************************************************************ PP

                    --EEEEEE----TT-HHHHHHHHHHHHHHHHHCC-TTTCCCEEEEEETT-SHHHHHHHGGG-SEEEE---TTTSSS-SHHHHHHHTT-EEEEESST CS
  Phosphorylase 482 vprtvifggkaapgYalAkkiiklinsvaevvnndpevkdklkvvflenynvslaekiipaadlseqistagkeASGTgnmkfmlnGaltigtlDG 577
                    vpr+++fg+kaapgY+lAk+ii  in+vae +nndp+v+dklkvvfl++y vs+aek+ipaad+seqistagkeASGTgnmk++lnGalt+gtlDG
     CTQ30370.1 565 VPRVFLFGAKAAPGYYLAKNIIFAINKVAEAINNDPKVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDG 660
                    ************************************************************************************************ PP

                    CHHHHHHHH-GGGSEEES-BHHHHHHHHHHT--HHHHHHH-HHHHHHHHHHHCTTTTTTSTTTTHHHHHHHCTCC-TT-CHHHHHHHHHHHHHHHH CS
  Phosphorylase 578 anvEiaeevgeenifiFGltaeeveelkkkgynpkelyekdpelkevldalesgtfsekekeefkelvdsllekkDeylvlaDfesYveaqekvee 673
                    anvEiae+vgeenifiFG+t+eev++lk+kgy+p ++ +kd+ l++vl++le+gt+s+++k++f+++++sll+  D ylvlaDfe+Yv+aq++v+e
     CTQ30370.1 661 ANVEIAEQVGEENIFIFGHTVEEVKALKAKGYDPLKWRKKDKLLDAVLKELENGTYSNGDKHAFDQMLHSLLQGGDPYLVLADFEAYVAAQKRVDE 756
                    ************************************************************************************************ PP

                    HHCSHHHHHHHHHHHHHCGGGGBHHHHHHHHHHHTTT CS
  Phosphorylase 674 aYkdkkewakksilniaksgkFssDrtikeYaeeiWk 710
                     Y+d+++w++ +iln+a++g+FssDr+i++Y+++iW+
     CTQ30370.1 757 LYRDEEAWTRAAILNTARCGMFSSDRSIRDYQQRIWQ 793
                    ************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 5689.59
//
Query:       CTQ30371.1  [L=62]
Description: Chloride channel protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       265  (0.0147805); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 504.51
//
Query:       CTQ30372.1  [L=901]
Description: fused conserved hypothetical protein; DNA-binding transcriptional activator, maltotriose-ATP-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     4e-110  368.3  24.6     4e-110  368.3  24.6    2.7  3  TPR_MalT         MalT-like TPR region
    1.5e-20   72.4   0.0    4.5e-20   70.9   0.0    1.9  2  GerE             Bacterial regulatory proteins, luxR family
    1.8e-06   28.5   3.9    2.7e-06   27.9   0.1    3.3  3  AAA_16           AAA ATPase domain
    4.8e-06   26.4   0.3       0.11   12.8   0.1    5.7  5  TPR_8            Tetratricopeptide repeat
    0.00085   19.3   7.5        1.5    9.1   0.2    6.8  6  TPR_2            Tetratricopeptide repeat
     0.0012   18.6   0.0        1.4    8.6   0.0    3.3  3  RPN7             26S proteasome subunit RPN7
     0.0021   17.7   0.0      0.011   15.4   0.0    2.3  1  Sigma70_r4_2     Sigma-70, region 4
     0.0025   18.3  18.1        1.5    9.4   0.3    6.1  5  TPR_19           Tetratricopeptide repeat
     0.0034   17.6  26.8      0.053   13.8   1.2    7.4  8  TPR_12           Tetratricopeptide repeat
     0.0035   17.1   0.0      0.011   15.5   0.0    2.0  1  HTH_23           Homeodomain-like domain
     0.0038   17.7  13.0         21    6.1   0.5    7.1  6  TPR_4            Tetratricopeptide repeat
     0.0076   16.5   2.2       0.18   12.1   0.0    3.7  3  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.018   14.6   0.0       0.05   13.1   0.0    1.8  1  Sigma70_r4       Sigma-70, region 4
       0.04   14.3   0.4       0.33   11.3   0.0    2.7  2  Penicillinase_R  Penicillinase repressor
      0.066   12.9   0.0       0.77    9.4   0.0    2.8  3  AAA_30           AAA domain
      0.084   12.7   0.0       0.21   11.4   0.0    1.6  1  HTH_38           Helix-turn-helix domain
       0.18   12.0   5.2        9.3    6.6   0.1    4.3  3  ANAPC3           Anaphase-promoting complex, cyclosome, subun
        3.9    8.6  17.0    1.2e+02    4.0   0.1    7.3  6  TPR_14           Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.48   4.8e+02     158     194 ..      70     106 ..      58     129 .. 0.65
   2 ?   -2.6   0.2       2.7   2.7e+03     285     305 ..     414     434 ..     389     440 .. 0.60
   3 !  368.3  24.6  4.1e-113    4e-110       1     333 [.     449     781 ..     449     784 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.48
    TPR_MalT 158 eaaldayvllarialaqGdleeAetllekaeelares 194
                 ++   a  l+a i++a G++ +A +++ +  + a  s
  CTQ30372.1  70 QQERFASYLIAAIQQATGNHCAASEAMVQKRQYASLS 106
                 4444455677888888888888777776666655544 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.7
    TPR_MalT 285 LqalalqaqgreeeAlaaLeq 305
                 Lqa+++q q+r  e+   L++
  CTQ30372.1 414 LQAWLMQSQHRYSEVNTLLAR 434
                 344444444444433333333 PP

  == domain 3  score: 368.3 bits;  conditional E-value: 4.1e-113
    TPR_MalT   1 geiaalrAllaiasgdaeralelArqALallpeddllariaatavlGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheA 99 
                 g ++alrA++ai+ gd ++a++l+  AL+ lp  ++++ri+at+v+Ge+ +++G+l+++l+++q++e++ar++d +h al++++qq+eil+aqG+L++A
  CTQ30372.1 449 GDFNALRAQVAINDGDQDEAERLSMVALEELPLANYYSRIVATSVHGEVLHCKGKLTKSLAVMQQTEQMARRHDVWHYALWSIIQQSEILFAQGFLQAA 547
                 789************************************************************************************************ PP

    TPR_MalT 100 letyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleqlepeaaldayvllarialaqGdleeAetllekaeelaresnfhv 198
                 +e +e+a+ql++eq+l+qlp+++fll+++++ll+ w +L+eAe ++++G+++l  ++p+++l++++l+++ +la+Gdl++A + l+++e+l+ + ++h 
  CTQ30372.1 548 WESQEKAFQLVREQHLEQLPMHEFLLRIRSQLLWAWARLDEAEACARQGMDVLSTYQPQQQLQCLALMVQCSLARGDLDNARSHLNRLENLLGNGHYHS 646
                 *************************************************************************************************** PP

    TPR_MalT 199 dwlanaeevrvrlwlaqgdlaaaerwleaaelpsdddnhflelelrnlarvllalgrydeAlellerLlkaaeelgrvrslieiliLqalalqaqgree 297
                 dw++na++vrv++w+++gd+ aa +wl+++++p+ ++nhfl+ ++rn+ar++++lg++++A+ +le+L ++a+ l+++++l+++l+L++++++++gr+ 
  CTQ30372.1 647 DWVSNADKVRVIYWQMTGDKTAAANWLRQTPKPEFANNHFLQSQWRNIARAQILLGDFEPAEMVLEELNENARSLRLMSDLNRNLLLLNQLYWQSGRKS 745
                 *************************************************************************************************** PP

    TPR_MalT 298 eAlaaLeqALeLAepegyirsFvdeGeplakLLkel 333
                 eA++aL +AL+LA+ +g+i +Fv eGe +a++L++l
  CTQ30372.1 746 EAQKALLEALTLANRTGFINHFVIEGEAMAQQLRQL 781
                 **********************************98 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.6   4.6e+03      13      23 ..     351     361 ..     350     365 .. 0.86
   2 !   70.9   0.0   4.6e-23   4.5e-20       2      57 .]     835     890 ..     834     890 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.6
                 HHCTTS-HHHH CS
        GerE  13 llaeGksnkeI 23 
                 ++a+G+ ++ I
  CTQ30372.1 351 WMAQGFPSEAI 361
                 9*****99988 PP

  == domain 2  score: 70.9 bits;  conditional E-value: 4.6e-23
                 SS-HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHHHT-SSHHHHHHHH CS
        GerE   2 sLskRErevLrllaeGksnkeIAeelniSekTVkvhksnimkKLnvksrvelvrla 57 
                 +L++RE++vL l+++G+sn++IA el+++++T+k+h++n+++KL+v +r+++v++a
  CTQ30372.1 835 PLTQREWQVLGLIYSGYSNEQIAGELDVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890
                 7****************************************************987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1   2.7e-09   2.7e-06      10     149 ..      20     135 ..      12     158 .. 0.61
   2 ?   -1.2   0.1       2.4   2.4e+03      71     123 ..     166     215 ..     142     286 .. 0.57
   3 ?   -2.0   0.1       4.1   4.1e+03     117     117 ..     772     772 ..     688     831 .. 0.60

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.7e-09
      AAA_16  10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekdg.giflrgkcdql.esaipysalaqalareellrqlldeaesaeleawrekleeala 106
                 e+Ll+ l+ ++    +lvl++ ++G GK++l+ +++  + k++ g+f   + d   e+ ++y  l+ a      ++q   ++ +a+ +  +++  +   
  CTQ30372.1  20 ERLLAKLSGANNY--RLVLITSPAGYGKTTLISQWA--AGKNDlGWFSLDEGDNQqERFASY--LIAA------IQQATGNHCAASEAMVQKRQYA--- 103
                 4555555544444..89*******************..477766888555555551444444..2222......2333333222233333333333... PP

      AAA_16 107 avpelagaeasrllellkrll.allsrderplvlvlDdlqwade 149
                            +l  l+++l+ +l+   +rpl+lv+Dd + +  
  CTQ30372.1 104 -----------SLSSLFAQLFiELADW-QRPLYLVIDDYHLINN 135
                 ...........5666777777577788.9**********98765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.4
      AAA_16  71 alaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllell 123
                  +a++  r++ll+   ++++   +++++++++ +l+  ++++++++srl++ +
  CTQ30372.1 166 GIANLRVRDQLLEIGSQQLAF-THQEAKQFFDCRLT--SPIEADDSSRLCDDV 215
                 555555565666655555555.45555555555555..333333333333332 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.1
      AAA_16 117 s 117
                 +
  CTQ30372.1 772 E 772
                 2 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.7   1.7e+03       5      21 ..     453     469 ..     450     473 .. 0.87
   2 ?    1.1   0.0       0.6     6e+02       8      26 ..     577     595 ..     575     599 .. 0.87
   3 ?   -1.8   0.0       5.1   5.1e+03      11      26 ..     619     634 ..     610     636 .. 0.76
   4 ?    3.7   0.0     0.091        91       6      27 ..     693     714 ..     691     720 .. 0.88
   5 !   12.8   0.1   0.00011      0.11       9      32 ..     736     759 ..     729     761 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.7
                 HHHHHHHHHTT-HHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAk 21 
                  + +++ ++ gd +eA+
  CTQ30372.1 453 ALRAQVAINDGDQDEAE 469
                 578999**********7 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.6
                 HHHHHHTT-HHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyek 26 
                 +++++   +++eA+++ ++
  CTQ30372.1 577 SQLLWAWARLDEAEACARQ 595
                 68999999********988 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 5.1
                 HHHTT-HHHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyyek 26 
                  l  gd+++A + +++
  CTQ30372.1 619 SLARGDLDNARSHLNR 634
                 56679*****998875 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.091
                 HHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyeka 27 
                 n++++ + lgd+e A+ ++e+ 
  CTQ30372.1 693 NIARAQILLGDFEPAEMVLEEL 714
                 899*************999986 PP

  == domain 5  score: 12.8 bits;  conditional E-value: 0.00011
                 HHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   9 siylklgdyeeAkeyyekaleldp 32 
                 ++y++ g++ eA++++ +al+l+ 
  CTQ30372.1 736 QLYWQSGRKSEAQKALLEALTLAN 759
                 89*******************985 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.083        83       1      27 [.     341     367 ..     341     368 .. 0.90
   2 ?    0.5   0.0      0.87   8.6e+02       6      22 ..     454     470 ..     450     471 .. 0.87
   3 ?    0.9   0.0      0.66   6.6e+02      10      27 ..     618     635 ..     617     641 .. 0.84
   4 ?    1.2   0.0      0.54   5.3e+02       4      20 ..     691     707 ..     689     713 .. 0.91
   5 !    9.1   0.2    0.0015       1.5      10      31 ..     737     758 ..     736     760 .. 0.92
   6 ?   -2.4   0.0       7.5   7.5e+03      18      29 ..     884     895 ..     881     897 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.083
       TPR_2   1 aealynlGlayyklgdyeeAleafekA 27 
                 +e++ + +++++++g + eA+++  +A
  CTQ30372.1 341 PEIHRAAAESWMAQGFPSEAIHHALAA 367
                 689999***************998765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.87
       TPR_2   6 nlGlayyklgdyeeAle 22 
                  +++++++ gd +eA++
  CTQ30372.1 454 LRAQVAINDGDQDEAER 470
                 799************86 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.66
       TPR_2  10 ayyklgdyeeAleafekA 27 
                 + +++gd++ A+ ++++ 
  CTQ30372.1 618 CSLARGDLDNARSHLNRL 635
                 56789*********9986 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.54
       TPR_2   4 lynlGlayyklgdyeeA 20 
                 + n+++a + lgd+e A
  CTQ30372.1 691 WRNIARAQILLGDFEPA 707
                 99************976 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.0015
       TPR_2  10 ayyklgdyeeAleafekAleld 31 
                 +y+++g+  eA +a+ +Al l+
  CTQ30372.1 737 LYWQSGRKSEAQKALLEALTLA 758
                 79*****************997 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 7.5
       TPR_2  18 eeAleafekAle 29 
                 ++A+++ ++ l+
  CTQ30372.1 884 QDAVQHAQQLLK 895
                 799******998 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0014       1.4      53     107 ..     587     643 ..     581     656 .. 0.82
   2 ?    4.8   0.0     0.021        21      45     108 ..     659     723 ..     647     756 .. 0.75
   3 ?    2.1   0.0      0.14   1.4e+02      28      64 ..     720     756 ..     711     769 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0014
                 HHHHHHHHTCCC..C--SHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHCSSS--- CS
        RPN7  53 eeAlkaysrire..yctslkhkidmllnlirvaiffndwdlvskylekakellekgg 107
                 +eA ++ ++ ++   + ++++ +++l  +++ +++++d d + ++l+++++ll +g+
  CTQ30372.1 587 DEAEACARQGMDvlSTYQPQQQLQCLALMVQCSLARGDLDNARSHLNRLENLLGNGH 643
                 56666666655422466899*********************************9976 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.021
                 HHHHCT-HHHHHHHHHTCCCC--SHHHHH.HHHHHHHHHHHHTT-HHHHHHHHHHHHCSSS---. CS
        RPN7  45 hYlkigdleeAlkaysrireyctslkhki.dmllnlirvaiffndwdlvskylekakellekggd 108
                 ++ ++gd++ A ++++++ ++    +h + + + n+ r +i ++d++ ++ +le+++e   +   
  CTQ30372.1 659 YWQMTGDKTAAANWLRQTPKPEFANNHFLqSQWRNIARAQILLGDFEPAEMVLEELNENARSLRL 723
                 77888999999999999999988888887346999999999999999999999988877665544 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.14
                 HTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCC CS
        RPN7  28 enlgkeeirrakldlaehYlkigdleeAlkaysrire 64 
                 +    ++  r  l l + Y + g ++eA+ka+ +++ 
  CTQ30372.1 720 SLRLMSDLNRNLLLLNQLYWQSGRKSEAQKALLEALT 756
                 5555677888899999***************999875 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-05     0.011      21      53 ..     846     877 ..     836     878 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
                   HHHTS---HHHHHHHHT--HHHHHHHHHHHHHH CS
  Sigma70_r4_2  21 lryleglsykEIAellgisegtVksrlsRArkk 53 
                   l+ + g+s ++IA +l++  +t+k++++   +k
    CTQ30372.1 846 LI-YSGYSNEQIAGELDVAATTIKTHIRNLYQK 877
                   54.69**********************876655 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1       1.3   1.3e+03      12      51 ..     391     435 ..     390     439 .. 0.79
   2 ?    4.2   0.8     0.063        63      24      63 ..     448     487 ..     421     490 .. 0.79
   3 !    9.4   0.3    0.0015       1.5      24      62 ..     608     645 ..     585     646 .. 0.80
   4 ?    6.2   0.1     0.015        15      30      57 ..     693     720 ..     664     729 .. 0.85
   5 ?    6.1   0.3     0.016        16      29      51 ..     732     754 ..     724     760 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1.3
      TPR_19  12 alleqalqedpk.....naearllLAeallalgqldeAealLdal 51 
                  lleq l++ p      n+++ ll A ++ ++ ++ e   lL+++
  CTQ30372.1 391 GLLEQSLAALPWsnlleNPRLILLQAWLMQSQHRYSEVNTLLARA 435
                 578888888888888889999998899999999998888888776 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.063
      TPR_19  24 naearllLAeallalgqldeAealLdalpeedpddaryas 63 
                 +++  +l A++ ++ g+ deAe+l   ++ee p   +y++
  CTQ30372.1 448 HGDFNALRAQVAINDGDQDEAERLSMVALEELPLANYYSR 487
                 67788889***********************999666655 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0015
      TPR_19  24 naearllLAeallalgqldeAealLdalpeedpddarya 62 
                 ++  ++l++++ la g+ld A+  L++l +   +   y+
  CTQ30372.1 608 QLQCLALMVQCSLARGDLDNARSHLNRLENLLGN-GHYH 645
                 56667789********************998888.7776 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.015
      TPR_19  30 lLAeallalgqldeAealLdalpeedpd 57 
                 + A+a++ lg+++ Ae +L++l e ++ 
  CTQ30372.1 693 NIARAQILLGDFEPAEMVLEELNENARS 720
                 47*******************9988765 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.016
      TPR_19  29 llLAeallalgqldeAealLdal 51 
                 llL ++++++g+  eA+++L ++
  CTQ30372.1 732 LLLNQLYWQSGRKSEAQKALLEA 754
                 56889************999766 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       6.5   6.5e+03      40      63 ..      68      91 ..      64      95 .. 0.67
   2 ?   -2.3   0.0       5.7   5.7e+03      10      25 ..     325     340 ..     322     350 .. 0.87
   3 ?    4.8   0.1     0.034        34       9      76 ..     455     519 ..     450     520 .. 0.84
   4 !   13.8   1.2   5.4e-05     0.053       8      74 ..     533     599 ..     526     601 .. 0.93
   5 ?    2.3   0.1       0.2     2e+02       9      33 ..     615     639 ..     608     676 .. 0.63
   6 ?    3.1   0.0      0.11   1.1e+02      49      70 ..     692     713 ..     691     720 .. 0.89
   7 !    7.3   0.4    0.0059       5.9      53      76 ..     736     759 ..     727     760 .. 0.87
   8 ?   -2.2   0.1       5.5   5.4e+03      46      68 ..     873     894 ..     864     896 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 6.5
      TPR_12 40 dhpltattlrnLgrlyralgryee 63
                d+ ++  + + ++ +++a+g++ +
  CTQ30372.1 68 DNQQERFASYLIAAIQQATGNHCA 91
                555666677778888888887755 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.7
      TPR_12  10 aavlrrlgrydeAlel 25 
                 +++lr++ +++ A el
  CTQ30372.1 325 GSFLRQRCQWELAVEL 340
                 889999****999886 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.034
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +a+v    g+ deA++l   ale     +  +++  + +    g++++  g++ + l+  +++ ++a+
  CTQ30372.1 455 RAQVAINDGDQDEAERLSMVALEEL---PLANYYSRIVATSVHGEVLHCKGKLTKSLAVMQQTEQMAR 519
                 6777777888888888888886666...6699999***************************999997 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 5.4e-05
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 +  ++l+++g ++ A e  eka +++r+ + ++ p     lr  ++l++a+ r++eA++  ++ +++
  CTQ30372.1 533 QQSEILFAQGFLQAAWESQEKAFQLVREQHLEQLPMHEFLLRIRSQLLWAWARLDEAEACARQGMDV 599
                 67799********************************************************998876 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.2
      TPR_12   9 laavlrrlgrydeAlellekaleia 33 
                 + ++ +++g++d A+++l++  ++ 
  CTQ30372.1 615 MVQCSLARGDLDNARSHLNRLENLL 639
                 5667778889999998888874444 PP

  == domain 6  score: 3.1 bits;  conditional E-value: 0.11
      TPR_12  49 rnLgrlyralgryeeAlellee 70 
                 rn++r++ +lg++e A+  lee
  CTQ30372.1 692 RNIARAQILLGDFEPAEMVLEE 713
                 79****************9998 PP

  == domain 7  score: 7.3 bits;  conditional E-value: 0.0059
      TPR_12  53 rlyralgryeeAlelleealaiae 76 
                 +ly+++gr  eA+++l eal +a 
  CTQ30372.1 736 QLYWQSGRKSEAQKALLEALTLAN 759
                 89******************9985 PP

  == domain 8  score: -2.2 bits;  conditional E-value: 5.5
      TPR_12  46 ttlrnLgrlyralgryeeAlell 68 
                 + ++ Lg ++ +++  + A++ll
  CTQ30372.1 873 NLYQKLGVAH-RQDAVQHAQQLL 894
                 5677777776.333555555544 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.1e-05     0.011       5      47 ..     838     881 ..     834     884 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
      HTH_23   5 reRlrillllaeGlsvreIAreLgvsrrTvy.rwlkryreeGle 47 
                 ++ +++l l   G+s ++IA eL+v   T+  ++++ y++ G++
  CTQ30372.1 838 QREWQVLGLIYSGYSNEQIAGELDVAATTIKtHIRNLYQKLGVA 881
                 677999*************************9999999888875 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       9.5   9.4e+03       4      15 ..     344     355 ..     341     357 .. 0.71
   2 ?    6.1   0.3     0.022        22       6      23 ..     454     471 ..     453     472 .. 0.92
   3 ?    6.1   0.5     0.021        21       1      15 [.     582     596 ..     582     597 .. 0.93
   4 ?    4.7   0.1      0.06        59       4      25 ..     612     633 ..     609     634 .. 0.79
   5 ?   -0.7   0.0       3.3   3.3e+03      11      26 .]     660     675 ..     656     675 .. 0.85
   6 ?    2.2   0.0      0.38   3.8e+02       8      25 ..     695     712 ..     692     713 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 9.5
       TPR_4   4 llaLArallalG 15 
                 + a A+ + a+G
  CTQ30372.1 344 HRAAAESWMAQG 355
                 667777777776 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.022
       TPR_4   6 aLArallalGdldeAral 23 
                 ++A+++   Gd deA++l
  CTQ30372.1 454 LRAQVAINDGDQDEAERL 471
                 79**************97 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.021
       TPR_4   1 arallaLArallalG 15 
                 a+a+l+ A+a++++G
  CTQ30372.1 582 AWARLDEAEACARQG 596
                 79***********99 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.06
       TPR_4   4 llaLArallalGdldeAralle 25 
                 l+++ +  la+Gdld Ar +l 
  CTQ30372.1 612 LALMVQCSLARGDLDNARSHLN 633
                 566666779**********996 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 3.3
       TPR_4  11 llalGdldeAraller 26 
                 ++ +Gd  +A+ +l++
  CTQ30372.1 660 WQMTGDKTAAANWLRQ 675
                 56789999******98 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.38
       TPR_4   8 ArallalGdldeAralle 25 
                 Ara+ +lGd++ A+ +le
  CTQ30372.1 695 ARAQILLGDFEPAEMVLE 712
                 99********97776655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00018      0.18       6     115 ..      33     149 ..      29     164 .. 0.65
   2 ?    1.1   0.0      0.43   4.3e+02      98     112 ..     466     479 ..     419     494 .. 0.90
   3 ?   -1.5   0.2       2.8   2.8e+03      49      90 ..     771     810 ..     736     816 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00018
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka............erlsseell.ealeqalrarav 91 
                 +++++t ++G GKTtl+ + +  +         ++   f    +++ ++ +++ l  a+++ + +            + +s++ l+ +++ + ++ ++ 
  CTQ30372.1  33 RLVLITSPAGYGKTTLISQWAAGK---------NDLGWFSLDEGDNQQERFASYLIAAIQQATGNhcaaseamvqkrQYASLSSLFaQLFIELADWQRP 122
                 6789*****************997.........333333333333345555555555555544445555888887666678888885666666666666 PP

      AAA_22  92 ielliiDEaqhlr.s...eealeeLrsl 115
                    l+iD+ + ++ +   +++  +Lr+ 
  CTQ30372.1 123 -LYLVIDDYHLINnPvihDAMRFFLRHQ 149
                 .**********97624524444444544 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.43
      AAA_22  98 DEaqhlrseealeeL 112
                 DEa++l s+ aleeL
  CTQ30372.1 466 DEAERL-SMVALEEL 479
                 9*****.*******9 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.8
      AAA_22  49 sstsskdllrellralglelkaerlsseellealeqalrara 90 
                 ++   ++l++ +  ++  el+   ++ +++l+ ++q+ r+++
  CTQ30372.1 771 GEAMAQQLRQLIQLNTLPELEQ--HRAQRILRDINQHHRHKF 810
                 4444555555555555555555..888888888888877765 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     5e-05      0.05       5      48 ..     836     878 ..     834     879 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5e-05
                 S-HHHHHHHHHHHTTT--HHHHHHHHTS-HHHHHHHHHHHHHHH CS
  Sigma70_r4   5 LpererevlelrfgeglTleEIgerlgiSrerVrqiekrAlrkL 48 
                 L++re++vl l +  g++ e+I+ +l++   +++ ++++  +kL
  CTQ30372.1 836 LTQREWQVLGLIY-SGYSNEQIAGELDVAATTIKTHIRNLYQKL 878
                 9***********9.34467*******************999998 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       3.2   3.2e+03      73     111 ..     745     783 ..     740     785 .. 0.81
   2 ?   11.3   0.0   0.00033      0.33       2      57 ..     837     886 ..     836     891 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.2
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Penicillinase_R  73 asavkqlldklfegsvkelvaafveeeklseddleeLre 111
                      ++a k ll+ l   +++ ++ +fv e ++ +++l++L +
       CTQ30372.1 745 SEAQKALLEALTLANRTGFINHFVIEGEAMAQQLRQLIQ 783
                      556677888888889999999**9998888888888877 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00033
                      --S-SHHHHHHHHHS-EEHHHHHHT--GGG---HHHHHHHHHHHHHTTS-EEEEET CS
  Penicillinase_R   2 gelEaevmeilwekgeatvkevveeleeekelaysTVktllrrLvkKgllsrekeg 57 
                      +++E++v+ ++++  +       e+++ e ++a +T+kt +r+L++K  ++++++ 
       CTQ30372.1 837 TQREWQVLGLIYSGYS--N----EQIAGELDVAATTIKTHIRNLYQKLGVAHRQDA 886
                      6667777777765433..3....5666777889**************999998875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00077      0.77      16      47 ..      30      75 ..      22     157 .. 0.62
   2 ?   -3.0   0.0       5.1   5.1e+03     148     164 ..     337     354 ..     324     375 .. 0.63
   3 ?   -1.5   0.0       1.7   1.7e+03      44      81 ..     838     875 ..     832     893 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00077
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaag..............g 47
                ++ r++++t pAG GKtt++++ ++  ++ g               
  CTQ30372.1 30 NNYRLVLITSPAGYGKTTLISQWAAGKNDLGwfsldegdnqqerfA 75
                556899***************9998888777666666665555443 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 5.1
      AAA_30 148 taeLtevvRqke.seera 164
                 ++eL e++R +  s++++
  CTQ30372.1 337 AVELPEIHRAAAeSWMAQ 354
                 677888888754355443 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.7
      AAA_30  44 aaggrviglAptgkaAkvLaeelgieastiakllkrlk 81 
                 +++ +v+gl  +g   +++a el+++a ti+  +++l 
  CTQ30372.1 838 QREWQVLGLIYSGYSNEQIAGELDVAATTIKTHIRNLY 875
                 56788999999999999999999999999998886655 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00021      0.21      17      42 ..     847     872 ..     842     873 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
      HTH_38  17 laeGlslreIArrLgrspsTIsRElk 42 
                 +  G+s+ +IA +L+++ +TI  +++
  CTQ30372.1 847 IYSGYSNEQIAGELDVAATTIKTHIR 872
                 568******************99987 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0094       9.3      42      81 ..     596     634 ..     587     635 .. 0.87
   2 ?    4.4   0.2     0.044        43      30      81 ..     695     753 ..     662     754 .. 0.76
   3 ?   -1.5   0.1         3     3e+03      40      59 ..     793     812 ..     791     813 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0094
                 HHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  42 AyellrkaklnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                  +++l+++ +  + l+c+ l+ qc+l+ + ++ A+++L +
  CTQ30372.1 596 GMDVLSTY-QPQQQLQCLALMVQCSLARGDLDNARSHLNR 634
                 56777777.778999**********************976 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.044
                 HHHHHHTT-HHHHHHHHHCTSHHHC-H.......HHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  30 AlclylngqykrAyellrkaklnsksl.......gcrylfAqcllkLkkyeeAiaaLek 81 
                 A +  l+g+++ A  +l+++++n +sl       + ++l+ q + + ++  eA +aL +
  CTQ30372.1 695 ARAQILLGDFEPAEMVLEELNENARSLrlmsdlnRNLLLLNQLYWQSGRKSEAQKALLE 753
                 78888899999999999999999999877777777777777887788888888777765 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3
                 HHHHHHHHCTSHHHC-HHHH CS
      ANAPC3  40 krAyellrkaklnskslgcr 59 
                 +rA+++lr+ ++ ++++ ++
  CTQ30372.1 793 HRAQRILRDINQHHRHKFAH 812
                 89********9999998765 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.41     4e+02       1      24 [.     341     364 ..     341     373 .. 0.86
   2 ?    1.8   0.1      0.56   5.6e+02       5      23 ..     453     471 ..     450     477 .. 0.91
   3 ?   -0.8   0.2         4     4e+03      14      26 ..     583     595 ..     572     603 .. 0.60
   4 ?    1.7   0.1      0.63   6.3e+02       5      27 ..     613     635 ..     609     639 .. 0.81
   5 ?    3.4   0.1      0.18   1.8e+02       4      27 ..     691     714 ..     689     725 .. 0.83
   6 ?    4.0   0.1      0.12   1.2e+02       9      30 ..     736     757 ..     730     761 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.41
      TPR_14   1 peallalaeallalGdpdeAiall 24 
                 pe ++a+ae  +a+G p eAi ++
  CTQ30372.1 341 PEIHRAAAESWMAQGFPSEAIHHA 364
                 68899***************9655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.56
      TPR_14   5 lalaeallalGdpdeAial 23 
                 +++a++  + Gd deA++l
  CTQ30372.1 453 ALRAQVAINDGDQDEAERL 471
                 578*************986 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 4
      TPR_14  14 lGdpdeAiallrr 26 
                   ++deA+a++r+
  CTQ30372.1 583 WARLDEAEACARQ 595
                 3445555554443 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.63
      TPR_14   5 lalaeallalGdpdeAiallrra 27 
                 +++++  la+Gd+d A+ +l+r+
  CTQ30372.1 613 ALMVQCSLARGDLDNARSHLNRL 635
                 556666789***********996 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.18
      TPR_14   4 llalaeallalGdpdeAiallrra 27 
                 ++ +a+a   lGd++ A+ +l+++
  CTQ30372.1 691 WRNIARAQILLGDFEPAEMVLEEL 714
                 67789999*************997 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.12
      TPR_14   9 eallalGdpdeAiallrralal 30 
                 ++++++G+  eA ++l +al l
  CTQ30372.1 736 QLYWQSGRKSEAQKALLEALTL 757
                 689***************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (901 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 6618.76
//
Query:       CTQ30373.1  [L=252]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-55  185.6   0.2    7.6e-55  185.2   0.2    1.1  1  DeoRC            DeoR C terminal sensor domain
    2.3e-24   84.9   0.0      4e-24   84.1   0.0    1.4  1  HTH_DeoR         DeoR-like helix-turn-helix domain
      1e-07   31.8   0.1    1.9e-07   30.9   0.1    1.4  1  HTH_11           HTH domain
    4.3e-06   26.3   0.0    9.4e-06   25.2   0.0    1.6  1  GntR             Bacterial regulatory proteins, gntR family
    0.00039   20.4   0.1     0.0009   19.2   0.0    1.5  2  DUF977           Bacterial protein of unknown function (DUF97
     0.0017   17.8   0.0     0.0024   17.3   0.0    1.3  1  CoA_trans        Coenzyme A transferase
     0.0063   16.5   0.0      0.011   15.7   0.0    1.4  1  Put_DNA-bind_N   Putative DNA-binding protein N-terminus
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.033   14.0   0.0    1.6  1  TFIIE_alpha      TFIIE alpha subunit
      0.022   14.4   0.0      0.063   12.9   0.0    1.7  2  GCD14            tRNA methyltransferase complex GCD14 subunit
      0.025   15.2   0.1       0.11   13.1   0.0    2.0  2  Phage_rep_O      Bacteriophage replication protein O
      0.029   14.0   0.2      0.048   13.2   0.2    1.3  1  DDRGK            DDRGK domain
      0.036   13.6   0.3       0.12   12.0   0.0    2.0  2  HTH_24           Winged helix-turn-helix DNA-binding
      0.039   14.7   0.0       0.11   13.2   0.0    1.8  1  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer
      0.047   13.9   0.0        1.5    9.1   0.0    2.4  2  Rio2_N           Rio2, N-terminal
      0.051   13.8   0.0       0.11   12.8   0.0    1.5  1  HTH_Tnp_Tc3_2    Transposase
      0.057   13.3   0.1       0.12   12.3   0.1    1.4  1  MarR_2           MarR family
        0.1   12.8   0.1       0.28   11.3   0.0    1.8  2  HTH_28           Helix-turn-helix domain
       0.11   12.9   0.0       0.23   11.8   0.0    1.5  1  Rrf2             Transcriptional regulator
       0.13   12.4   0.1       0.22   11.6   0.1    1.4  1  Sigma70_r1_1     Sigma-70 factor, region 1.1
       0.36   10.6   1.8       0.45   10.3   0.5    1.8  2  Arg_repressor    Arginine repressor, DNA binding domain


Domain annotation for each model (and alignments):
>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.2   0.2   8.5e-58   7.6e-55       2     159 ..      74     231 ..      73     232 .. 0.99

  Alignments for each domain:
  == domain 1  score: 185.2 bits;  conditional E-value: 8.5e-58
       DeoRC   2 naeeKrrIAkaAaeliedgdtifldaGtTtlelaraLaekknltvvTnslnvaeeLsekedikvillGGevrkkseslvgplaeealrqfnvdkaflga 100
                 +++eK+rIA+++a+ i+dg+t+f+d+GtT +++a+aL ++++l++vTn+lnva++L+ ked+++il+GGe+r++++ ++g++++++++qf++d+ +lg+
  CTQ30373.1  74 QTAEKERIARRVASEIPDGATLFIDIGTTPEAVAHALLDHNDLRIVTNNLNVANTLMVKEDFRIILAGGELRSRDGGIIGEATLDFISQFRLDFGILGI 172
                 789************************************************************************************************ PP

       DeoRC 101 ngidaegglttsdeeeaevkralieaarrvillaDssKfgkrafvriaaleeidalitD 159
                 +g+d++g+l+++d++e+++kra+ie++r+v+l++D++Kfg++a+v++++++ +da+ tD
  CTQ30373.1 173 SGVDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHTKFGRNAMVNMGSISMVDAVYTD 231
                 **********************************************************9 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.1   0.0   4.4e-27     4e-24       1      56 [.       6      61 ..       6      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 84.1 bits;  conditional E-value: 4.4e-27
    HTH_DeoR  1 RieqilellkqqgklsveelvellgvSeaTiRRDLneLeeqglltRthGGavsiss 56
                R+++i+el+k+qg++s+eelve++ vS++TiRRDLn L+eq ++ R+hGGa+++ss
  CTQ30373.1  6 RHDAIIELVKKQGYVSTEELVEQFAVSPQTIRRDLNDLAEQKMILRHHGGAALPSS 61
                9***************************************************9987 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.1   2.1e-10   1.9e-07       1      41 [.       6      45 ..       6      51 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.1e-10
      HTH_11  1 RllqilelLleargpisgeeLAeeLnvSrrtvrrdIkaLee 41
                R  +i+el+ +++g++s eeL e++ vS +t+rrd+ +L e
  CTQ30373.1  6 RHDAIIELV-KKQGYVSTEELVEQFAVSPQTIRRDLNDLAE 45
                556788888.99999***********************955 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.1e-08   9.4e-06      26      61 ..      21      56 ..      10      58 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.1e-08
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCE CS
        GntR 26 sereLaaefgVsrttvReALrrLeaeglverrqgrG 61
                s +eL+++f+Vs +t+R+ L+ L++++++ r++g++
  CTQ30373.1 21 STEELVEQFAVSPQTIRRDLNDLAEQKMILRHHGGA 56
                568******************************986 PP

>> DUF977  Bacterial protein of unknown function (DUF977)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     1e-06    0.0009      15      90 ..       8      85 ..       2      93 .. 0.84
   2 ?   -3.4   0.0       9.6   8.6e+03      40      56 ..     128     144 ..     113     149 .. 0.58

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1e-06
      DUF977 15 eriiGlvkkneritisdleritGvgrtsvrkylvdvlerGdlirpGkyGvfrdervvrvw..rkaaekatdqtlirkl 90
                + ii lvkk++ + +++l+  + v  +++r+ l d  e+  ++r+     + +  v   w  rka++ a  + + r++
  CTQ30373.1  8 DAIIELVKKQGYVSTEELVEQFAVSPQTIRRDLNDLAEQKMILRHHGGAALPSSSVNTSWhdRKATQTAEKERIARRV 85
                679********************************9999999998777788888888889667888777777776654 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.6
      DUF977  40 rtsvrkylvdvlerGdl 56 
                    v+  ++++l+ G+l
  CTQ30373.1 128 TLMVKEDFRIILAGGEL 144
                 33455666677776665 PP

>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.7e-06    0.0024       2      53 ..      79     125 ..      78     184 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 2.7e-06
                 CHHHHHHCTT--TTEEEEE-SBTTBT.HHHHHHHHHHHHTTTSEEEEESTTTE CS
   CoA_trans   2 etaaeavakeikdGmtvavGGFglig.iPealiaalarsgvkdltviiseagv 53 
                 e++a +va ei+dG+t+++     ig +Pea ++al++   +dl +++++  v
  CTQ30373.1  79 ERIARRVASEIPDGATLFID----IGtTPEAVAHALLDH--NDLRIVTNNLNV 125
                 78999***************....999***********8..888888887555 PP

>> Put_DNA-bind_N  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.3e-05     0.011      21      49 .]      15      41 ..       7      41 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.3e-05
                    HHTT--EE-HHHHHHHCTS-HHHHHHHHH CS
  Put_DNA-bind_N 21 keegveriSSteLaealgvtaaqvRKDLS 49
                    k+  + ++S +eL e+  v++ ++R+DL+
      CTQ30373.1 15 KK--QGYVSTEELVEQFAVSPQTIRRDLN 41
                    44..45**********************7 PP

>> TFIIE_alpha  TFIIE alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.7e-05     0.033      15      57 ..       7      49 ..       2      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHCTTSEBHHHHHHHHTS-HHHHHHHHHHHHHCTSE CS
  TFIIE_alpha 15 avlvldvLlekgevteedlakelkidlnelrklLnrLyearlv 57
                 +  +++ + ++g v+ e+l ++  + ++ +r+ Ln+L e++++
   CTQ30373.1  7 HDAIIELVKKQGYVSTEELVEQFAVSPQTIRRDLNDLAEQKMI 49
                 5678999999*******************************98 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.8   2.5e+03     116     132 ..      94     110 ..      67     122 .. 0.78
   2 ?   12.9   0.0     7e-05     0.063      62     125 ..     175     236 ..     170     248 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.8
       GCD14 116 avfLDlPaPweaiphaa 132
                 ++f+D+ +  ea+ ha 
  CTQ30373.1  94 TLFIDIGTTPEAVAHAL 110
                 57888888888888874 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 7e-05
       GCD14  62 vaPtGhlftfefheqraekareefrehel..sqlvtvthrDvckeGfdeevsgkvDavfLDlPaPw 125
                 v   G l  f++he r+++a+ e  +h +  +++++     + + G    + + vDav+ D+  P 
  CTQ30373.1 175 VDSDGSLLEFDYHEVRTKRAIIENSRHVMlvVDHTKFGRNAMVNMGS---I-SMVDAVYTDVLPPA 236
                 67789****************99999988556677777777777776...4.789****9986665 PP

>> Phage_rep_O  Bacteriophage replication protein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00012      0.11      45      83 ..      15      53 ..      13      69 .. 0.85
   2 ?   -1.3   0.0       3.8   3.4e+03      74      92 ..     199     217 ..     186     219 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00012
  Phage_rep_O 45 kksdwisnsqlveltgisrtkvskalkeLirekviikeg 83
                 kk+  +s+++lve  ++s++ +++ l+ L ++k+i ++ 
   CTQ30373.1 15 KKQGYVSTEELVEQFAVSPQTIRRDLNDLAEQKMILRHH 53
                 89999******************************9876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.8
  Phage_rep_O  74 irekviikegrkvgvnkni 92 
                   r  +++ +  k+g+n  +
   CTQ30373.1 199 SRHVMLVVDHTKFGRNAMV 217
                  4566888888888888765 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   5.4e-05     0.048     100     143 ..       6      49 ..       1      50 [. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.4e-05
                 HHHHHHHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS CS
       DDRGK 100 lleefinyikekKvvlleelavkfklktqevierikeLeeqgsl 143
                   + +i+ +k++ +v  eel  +f ++ q ++  +++L eq+++
  CTQ30373.1   6 RHDAIIELVKKQGYVSTEELVEQFAVSPQTIRRDLNDLAEQKMI 49 
                 56789************************************998 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00013      0.12       8      44 ..      10      46 ..       9      49 .. 0.90
   2 ?   -2.7   0.1       5.2   4.7e+03       1       8 [.     111     118 ..     111     119 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
      HTH_24  8 ILelLqknprisqreLAerlglSpstvnrrlkrLeee 44
                I+el++k++  s  eL e+  +Sp+t++r l+ L e+
  CTQ30373.1 10 IIELVKKQGYVSTEELVEQFAVSPQTIRRDLNDLAEQ 46
                9***************************988888776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.2
      HTH_24   1 ldetdrkI 8  
                 ld++d++I
  CTQ30373.1 111 LDHNDLRI 118
                 799****9 PP

>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00012      0.11       8      86 ..     150     228 ..     148     243 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00012
                      SHHHHHHHHHHHHCTTTEEEEEEEE.SSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHH CS
  DXP_reductoisom   8 GSIGtqtLdvieenpdkfevvalaa.gsnvellaeqakefkpklvavadeeaaeelkealkekelktevlvGeealkela 86 
                      G IG++tLd i++++  f + ++++ +s+ +ll    +e++ k +++++++++  + +++k  + ++ v +G+ ++++++
       CTQ30373.1 150 GIIGEATLDFISQFRLDFGILGISGvDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHTK-FGRNAMVNMGSISMVDAV 228
                      88***********************77888888888999********99999888877773.466666666665555544 PP

>> Rio2_N  Rio2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0    0.0017       1.5      18      57 ..      13      52 ..       8      57 .. 0.86
   2 ?    2.1   0.0      0.26   2.3e+02       4      37 ..     130     164 ..     128     169 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0017
      Rio2_N 18 gmrnhevVptelieeisrlkeeevkkrlsrllkaklisrk 57
                  ++  +V+te++ e   ++ + +++ l++l+++k+i r+
  CTQ30373.1 13 LVKKQGYVSTEELVEQFAVSPQTIRRDLNDLAEQKMILRH 52
                45778899999999999999*****************985 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.26
      Rio2_N   4 Lskedfrv.LtavEmgmrnhevVptelieeisrlk 37 
                 + kedfr+ L + E+ +r+  ++ +  +  is+ +
  CTQ30373.1 130 MVKEDFRIiLAGGELRSRDGGIIGEATLDFISQFR 164
                 6699***6478899999999999999998888766 PP

>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00012      0.11       2      40 ..       8      41 ..       7      45 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00012
  HTH_Tnp_Tc3_2  2 rrIvrlvrkdPritlreLanelkeeGksvsreTirrrLr 40
                   ++I++lv+k+ +++ +eL++++      vs +Tirr L 
     CTQ30373.1  8 DAIIELVKKQGYVSTEELVEQF-----AVSPQTIRRDLN 41
                   79********************.....*********986 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00013      0.12       7      54 ..       6      52 ..       3      58 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00013
                HHHHHHHHHCTTTSEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEE CS
      MarR_2  7 qarvLaaLgrrpgrdltvgelarrlglsksavsrilkrLvaaGLverr 54
                 ++++ +L    g+ ++  el++ + +s++++ r l++L ++ ++ r 
  CTQ30373.1  6 RHDAIIELVKKQGY-VSTEELVEQFAVSPQTIRRDLNDLAEQKMILRH 52
                57888899999998.99**************************99875 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00032      0.28       5      31 ..      10      38 ..       6      47 .. 0.86
   2 ?   -3.1   0.1       9.8   8.8e+03      15      27 ..      72      84 ..      68      85 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00032
      HTH_28  5 iiklla.aGh.svreaArelgisrrtvyr 31
                ii+l++ +G  s  e+ +++ +s++t++r
  CTQ30373.1 10 IIELVKkQGYvSTEELVEQFAVSPQTIRR 38
                78898845669****************98 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.8
      HTH_28 15 vreaArelgisrr 27
                ++++A++  i rr
  CTQ30373.1 72 ATQTAEKERIARR 84
                5778888888776 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00026      0.23      16      60 ..      12      54 ..       5      59 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00026
                HHHHSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETT CS
        Rrf2 16 yLakeeeeepvsseeiaerqnispsylekilakLrkaglvksvrG 60
                +L   ++++ vs+ee+ e++ +sp+ +++ l+ L++++++    G
  CTQ30373.1 12 ELV--KKQGYVSTEELVEQFAVSPQTIRRDLNDLAEQKMILRHHG 54
                444..444569*************************999866555 PP

>> Sigma70_r1_1  Sigma-70 factor, region 1.1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00024      0.22       3      34 ..       3      31 ..       1      46 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00024
                  HHHHHHHHHHHHHHHSCEEHHHHHHHGCCSS- CS
  Sigma70_r1_1  3 qkaavkeLikkgKkkGyLtyeEindaLpddel 34
                  q ++  ++i++ Kk+Gy++ eE+ + +    +
    CTQ30373.1  3 QTQRHDAIIELVKKQGYVSTEELVEQFA---V 31
                  66777889****************9996...3 PP

>> Arg_repressor  Arginine repressor, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.5    0.0005      0.45       1      48 [.       1      43 [.       1      54 [. 0.85
   2 ?   -2.5   0.0       4.9   4.4e+03      46      69 ..     187     210 ..     185     211 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0005
                   SSHHHHHHHHHHHHHHS---SHHHHHHHHHTTT----HHHHHHHHHHH CS
  Arg_repressor  1 ikkeerqklikkiikeekissQkelvelLkeeGidvtQatvSRdLkel 48
                   +k+++r+ +i +++k++   s +elve+     + v   t+ RdL++l
     CTQ30373.1  1 MKQTQRHDAIIELVKKQGYVSTEELVEQ-----FAVSPQTIRRDLNDL 43
                   89************************86.....567777777887776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.9
                    HHHT-EEEETTSTSEEEE-B-SS- CS
  Arg_repressor  46 kelglvkvraengeyvYvlpaets 69 
                    +e +  +  +en ++v  +++ t+
     CTQ30373.1 187 HEVRTKRAIIENSRHVMLVVDHTK 210
                    677777777889999888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1949.84
//
Query:       CTQ30374.1  [L=274]
Description: putative intramembrane serine protease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-28   98.9   0.1    2.4e-28   98.1   0.1    1.4  1  Rhomboid_N  Cytoplasmic N-terminal domain of rhomboid serine 
    3.4e-27   95.3  17.4    3.4e-27   95.3  17.4    1.5  2  Rhomboid    Rhomboid family
  ------ inclusion threshold ------
      0.024   13.6   0.0      0.038   12.9   0.0    1.3  1  NAGLU       Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel 


Domain annotation for each model (and alignments):
>> Rhomboid_N  Cytoplasmic N-terminal domain of rhomboid serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.1   4.1e-32   2.4e-28       4      84 ..       2      80 ..       1      82 [. 0.96

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 4.1e-32
  Rhomboid_N  4 LlslenpraaqafidYlrsqgiklelrseeegvqlwledeeqlaqveaeleeFlqnPedekYqqAsWetgetsssslkykk 84
                ++s+ npr+aqaf+dY+++qgi l+++++++++ +wl+de+q+ +v+ael++Fl+nP d++Y++AsW++g+t +s l+y++
  CTQ30374.1  2 ITSFANPRVAQAFVDYMATQGIILTIQQHTQSD-VWLADESQAGRVRAELARFLENPADPRYLAASWQSGQT-NSGLRYQR 80
                899**************************9997.**************************************.******97 PP

>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.1   6.3e+03     102     114 ..      96     106 ..      82     118 .. 0.47
   2 !   95.3  17.4   5.7e-31   3.4e-27       4     144 ..     130     265 ..     127     270 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.1
                 HC...CCCCCCCC CS
    Rhomboid 102 iallllllfilln 114
                  a   ll++i++ 
  CTQ30374.1  96 WA--ILLICIAVF 106
                 22..222222222 PP

  == domain 2  score: 95.3 bits;  conditional E-value: 5.7e-31
                 CC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S...-EESSHHHHHHHHHHHHHHHHCCCCGS----H CS
    Rhomboid   4 rgelwrlltsmflHagwlHllfNmlallvfGsplerrlGslrflllyllsglagsllsllfsaesesplvGaSGaifgllgallvlvprnrkllrklii 102
                 + e wr+++++f+H++++H+lfN+l+++++G  +e+r+Gs ++++++++s+l+++++++ fs      + G+SG++++l+g++++++ r +++  +l  
  CTQ30374.1 130 QFEAWRYFSHAFMHFSLMHILFNLLWWWYLGGAVEKRIGSGKLVVITVISALLSGFVQHQFSGP---WFGGLSGVVYALMGYVWLRGERDPQSGIYLQR 225
                 6799************************************************************...8*************************999999 PP

                 C...CCCCCCCCCCHHHCTSSSTTTHHHHHHHHHHHHHHHHH CS
    Rhomboid 103 allllllfillnlvlgllpraggvsnlAHlgGllaGlllgll 144
                  l+l+ l++l+  ++ +++  ++++n AH++Gl++Gl+++++
  CTQ30374.1 226 GLILFSLVWLIAGWFDVFG--MAIANGAHVAGLATGLAMAFV 265
                 9444444444444444444..56****************997 PP

>> NAGLU  Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.4e-06     0.038      22      68 ..      12      58 ..       3      74 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.4e-06
                HHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT CS
       NAGLU 22 ereiDwmAlnGinlpLaivGqeavwqevlkelglsdeeikeflsgpa 68
                +  +D+mA +Gi l+++   q  vw +  ++ g  ++e+++fl +pa
  CTQ30374.1 12 QAFVDYMATQGIILTIQQHTQSDVWLADESQAGRVRAELARFLENPA 58
                6789****************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2179.72
//
Query:       CTQ30375.1  [L=109]
Description: thiosulfate:cyanide sulfurtransferase (rhodanese) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-16   58.5   0.1    1.5e-15   57.6   0.1    1.5  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.1   8.5e-20   1.5e-15       2     106 ..       9      98 ..       8      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 8.5e-20
   Rhodanese   2 akelkellekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaa.aallkklGyknvsvldG 99 
                 ++e+++ l+++ ++l+D+R+p+ Y+ gh pgA ++               ++++ +++++  d ++ v v c +g++++ a ++ll+  G+ +v+ +dG
  CTQ30375.1   9 VEEAHQKLHQQTAVLVDIRDPQSYAMGHTPGAFHL--------------TNDTLGAFMRD-NDFDTAVMVMCYHGNSSKGAaQYLLQ-QGFDKVYSVDG 91 
                 58999***999989*********************..............88888888886.56699999********7777255666.**999****** PP

   Rhodanese 100 Gfkawke 106
                 Gf+aw +
  CTQ30375.1  92 GFDAWHR 98 
                 *****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 890.85
//
Query:       CTQ30376.1  [L=502]
Description: sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-48  164.1   0.8    7.1e-48  164.0   0.0    1.5  2  DAO            FAD dependent oxidoreductase
    4.9e-14   52.3   0.1    1.4e-13   50.8   0.0    1.8  2  DAO_C          C-terminal domain of alpha-glycerophosphate ox
     0.0015   17.8   0.1     0.0079   15.5   0.1    1.9  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
     0.0053   16.2   3.8       0.26   10.6   2.8    2.3  2  FAD_oxidored   FAD dependent oxidoreductase
     0.0073   16.5   1.1      0.027   14.7   0.8    2.2  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.011   14.8   5.4       0.54    9.3   3.9    2.2  2  FAD_binding_2  FAD binding domain
       0.02   14.8   0.1      0.032   14.1   0.1    1.3  1  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d
       0.24   10.4   1.5        0.4    9.7   1.5    1.3  1  Lycopene_cycl  Lycopene cyclase protein
       0.36    9.9   2.2       0.56    9.2   2.2    1.2  1  GIDA           Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.0   0.0   3.6e-51   7.1e-48       1     315 [.       5     323 ..       5     359 .. 0.80
   2 ?   -2.9   0.1       1.9   3.9e+03      66      88 ..     457     477 ..     397     495 .. 0.51

  Alignments for each domain:
  == domain 1  score: 164.0 bits;  conditional E-value: 3.6e-51
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeele 97 
                 d+++iGGGi G+++A ++a rg  V+ le++ ++++++S+++s+l+h+glryl+++ e+ rl+ eal+e++ l +  +++i ++++  l+    ++ ++
  CTQ30376.1   5 DLIVIGGGINGAGIAADAAGRGlsVLMLEAR-DLACATSSASSKLIHGGLRYLEHY-EF-RLVSEALAEREVLLKM-APHIAFPMRFRLPHR--PHLRP 97 
                 789****************************.6677******************87.76.***************9.9*************4..4479* PP

                 HHHHHHHHH..HHTTTTEEEEEHHHHHHHSTT....STTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE.EECT.E CS
         DAO  98 aldkllall..leagldaelldaeevrelepa....lpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve.rttp.g 188
                 a+ ++++l     +g ++  l ++ +  ++ a     p+++ ++ y d  +vd+a+l+ a a+ + ++G+e++++t++ + ++e +++w ve ++ + g
  CTQ30376.1  98 AWMIRIGLFmyDHLGKRT-SLPGS-TGLRFGAesvlKPEIVRGFEYSD-CWVDDARLVLANAQMVVRKGGEVRTRTRAISAKRE-NGLWVVEaEDIDsG 192
                 ****99999873333332.35554.45555443332338888888888.899****************************9775.578***88434447 PP

                 EEE..EEEEEEE--GGGHH.HH..HTTCTTTSEEEEEEEEEEEEEECCTHSTGSGCSEEEEEEEETTTTEEEEEETTSEEEEEESSEEETTCSS.TSCS CS
         DAO 189 end..aadavVnaaGawsd.ll..gllkeldlpispvrgqvlvlkplseklvspaailpvpetdddgrgvyvtprkdgrvlvGgtadeesgddd.pevd 281
                 e++  +a+ +Vna+G+w++ ++  g++ + +  i+ ++g+++v+ p+  ++    +++ ++  ++d+r v+v+p+ d   ++G+t++e +gd   +++d
  CTQ30376.1 193 EKFtwKARGLVNATGPWVKqFFdeGMHLRSPYGIRLIKGSHIVV-PRVHTQ----KQAYIL-QNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKaVAID 285
                 774365577**********77774444444579999********.544422....344455.8899**********998999****9666555569*** PP

                 HHHHHHHHHHHHHHSGG.G..CGEEEEEEEEEEE.TTS CS
         DAO 282 eedidellealrklfPq.l..gdvlrkwaGlrpl.pdg 315
                 +++i++ll+  +++f + l  +d++++++G+rpl +d+
  CTQ30376.1 286 DKEINYLLNVYNAHFKKtLsrDDIVWTYSGVRPLcDDE 323
                 ***************77645588**********53544 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.9
                 HHH.HHHHHHHSSTTSEEEEEEEE CS
         DAO  66 eel.releeelgididyrrtGlls 88 
                 +e+ r l++   i +   ++G+  
  CTQ30376.1 457 HEWvRSLDDA--I-WRRTKQGMWL 477
                 2222333322..2.2222233333 PP

>> DAO_C  C-terminal domain of alpha-glycerophosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.2   8.4e+03      26      41 ..     282     297 ..     270     307 .. 0.79
   2 !   50.8   0.0   6.9e-17   1.4e-13       3     118 ..     381     492 ..     379     498 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.2
                 HT--HHHHHHHHHHHG CS
       DAO_C  26 ygldeevaehLaerYG 41 
                 + +d +++++L++ Y 
  CTQ30376.1 282 VAIDDKEINYLLNVYN 297
                 5789999999999995 PP

  == domain 2  score: 50.8 bits;  conditional E-value: 6.9e-17
                 TTS---TT--.........TT-STTHT.--HHHHHHHHHHHGGGHHHHHHHHHHTH...HHHHHTTS-HHHHHHHHHHHHHS---SHHHHHHTTS-HHH CS
       DAO_C   3 TkklpLvGaenw..sknlaaelaqeyg.ldeevaehLaerYGsraeevlelakedekpelaerlspelpyieaevvYavrhEmartlvDvlaRRtrlaf 98 
                 Tk+  L+G++ +   +++aa+l +++  ++e  a+h a++YGs+ e +l+ a++ +    +   ++ +++ eae++Y v+hE +r+l+D + RRt+  +
  CTQ30376.1 381 TKTAVLPGGDIGgdRDDYAAKLRRRFPfISESLARHYARTYGSNSEWILKEASALS----DLGEDFGHEFYEAELKYLVEHEWVRSLDDAIWRRTKQGM 475
                 99999****95588999*********7699*******************5444443....556678899***************************998 PP

                 H-HHHHHHHHHHHHHHHHHH CS
       DAO_C  99 ldadaalealpevaelmaee 118
                      ++e   ++ e +a++
  CTQ30376.1 476 W---LTAEQQARISEWLAQH 492
                 8...4444445555555555 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1     4e-06    0.0079       1     147 [.       4     257 ..       4     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4e-06
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH......................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................... RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias......................................... 57 
                  kd++viGgG+ G   a ++a  g+ v+++e+++         sk ++g  +  e  +                                         
   CTQ30376.1   4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEARDLACATSSASSKLIHGGLRYLEHYEfrlvsealaerevllkmaphiafpmrfrlphrphlrpawmi 101
                  589**************************744444444445556555554444443355688888888888899999999999999999999999999 PP

                  .......................................................HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC..TCEEEE CS
                  .......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx RF
  Pyr_redox_2  58 .......................................................evvkklnqgielllgeevvkidpgkkkvklekkke..gdeeki 98 
                                                                         + v + + +++++++  +++  ++++  ++e+++   g++++ 
   CTQ30376.1 102 riglfmydhlgkrtslpgstglrfgaesvlkpeivrgfeysdcwvddarlvlanaQMVVRKGGEVRTRTR--AISAKRENGLWVVEAEDIdsGEKFTW 197
                  9999999999999999999999999999999999999999999988888888865222233333444444..77777777655554433256888888 PP

                  EESEEEE---EEE-BCTCTTC............TTBEECCSECHHHHHHCCSS-TSEEEE CS
                  xxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  99 aydklvlAtGssprdlgipGv...........aenvgklvrtldsaealklkllpkrivv 147
                  ++  lv AtG + + +  +G+           +   + + r  ++++a+ l++ +kriv 
   CTQ30376.1 198 KARGLVNATGPWVKQFFDEGMhlrspygirliKGSHIVVPRVHTQKQAYILQNEDKRIVF 257
                  888899999999999988888888777777775555555677777777777777777765 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   2.8   0.00013      0.26       1      32 [.       5      36 ..       5      45 .. 0.96
   2 ?    4.3   0.0     0.011        21      91     144 ..     153     207 ..     127     208 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveerg 32
                  D++V+GGg+ G   A  Aa +G +vl++e r+
    CTQ30376.1  5 DLIVIGGGINGAGIAADAAGRGLSVLMLEARD 36
                  99***************************986 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.011
  FAD_oxidored  91 avleemlaeagvtvllntrlvevekegkriesvtveske.g.rktirAkvfiDATg 144
                    +  +m+ ++g +v + tr++++++e+  ++ v++e+ + g + t +A+  + ATg
    CTQ30376.1 153 LANAQMVVRKGGEVRTRTRAISAKREN-GLWVVEAEDIDsGeKFTWKARGLVNATG 207
                   5557899999***************96.89999999999888*************8 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.8   1.4e-05     0.027       1      33 [.       8      40 ..       8      67 .. 0.81
   2 ?   -2.6   0.0       3.3   6.6e+03      31      46 ..     351     367 ..     349     381 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGG 33
                   ++G+G+ G+ +A+ +a +g++vl le+rd  + 
     CTQ30376.1  8 VIGGGINGAGIAADAAGRGLSVLMLEARDLACA 40
                   8***************************87654 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.3
                    SSGGG-EECE.TTCEEC CS
  NAD_binding_8  31 lGGraasyev.pgvrvd 46 
                    +GG++++y+   +++++
     CTQ30376.1 351 FGGKLTTYRKlAEHALE 367
                    79999999865555555 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.9   0.00027      0.54       1      37 [.       5      41 ..       5      53 .. 0.84
   2 ?    4.8   0.0    0.0062        12     137     204 ..     145     211 ..     134     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00027
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   D+iViG+G+ G   A+ aa +Gl+v+++e  +    +
     CTQ30376.1  5 DLIVIGGGINGAGIAADAAGRGLSVLMLEARDLACAT 41
                   89***************************98873333 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0062
                    ..HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 137 lvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfgr 204
                    +v+  +l+ + ++ + + g ++++rt+a +  +e+g    +++e+ +sg++++ +a+++v atg + +
     CTQ30376.1 145 WVDDARLVLANAQMVVRKGGEVRTRTRAISAKRENG-LWVVEAEDIDSGEKFTWKARGLVNATGPWVK 211
                    677778888888888899999999999999977555.555666777******************8876 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   1.6e-05     0.032       3      39 ..       7      43 ..       5      71 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
                EEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHH CS
     3HCDH_N  3 aviGaGtmGagiaavfasagleVvlvdiseealekal 39
                 viG G+ Gagiaa +a +gl+V +++ ++ a +++ 
  CTQ30376.1  7 IVIGGGINGAGIAADAAGRGLSVLMLEARDLACATSS 43
                59************************99887766554 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.5    0.0002       0.4       1      35 [.       5      37 ..       5      45 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0002
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieasps 35
                   D++viG+G  g  +Aa    a  gl+v+++ea + 
     CTQ30376.1  5 DLIVIGGGINGAGIAADA--AGRGLSVLMLEARDL 37
                   9*****************..***********9775 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.2   0.00028      0.56       1      31 [.       5      35 ..       5      52 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00028
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithk 31
                d+iViGgG  G   A+ aa +G++vl++  +
  CTQ30376.1  5 DLIVIGGGINGAGIAADAAGRGLSVLMLEAR 35
                689************************9443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3849.38
//
Query:       CTQ30377.1  [L=815]
Description: glycogen phosphorylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
          0 1086.9   0.0          0 1086.7   0.0    1.0  1  Phosphorylase  Carbohydrate phosphorylase


Domain annotation for each model (and alignments):
>> Phosphorylase  Carbohydrate phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1086.7   0.0         0         0       1     711 []     102     810 ..     102     810 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1086.7 bits;  conditional E-value: 0
                    HHCTT--HHHHHTTS--ECESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTCCG-TT-EE-GGG-EEEEESCEEE CS
  Phosphorylase   1 lkelgldleeleeqeedagLGnGGLGRLAacfldslatlelpavGygirYeyGlFkQkiedgaqveepdeWlkkgnpweiereekavevkfggkve 96 
                    l+e+gldleel ++e+d+gLGnGGLGRLAacfldsla+l+lp+ GygirY+yG+FkQ+i+dg+q+e+pd+Wl++gnpwe+er++++++v+fgg+++
     CTQ30377.1 102 LAEMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLAALGLPGRGYGIRYDYGMFKQNIVDGRQKESPDYWLEYGNPWEFERHNTRYKVRFGGRIQ 197
                    679********************************************************************************************9 PP

                    CCTTE...ESEEESCEEEEEEEEEEEEE-SSSS-EEEEEEEEEE-STTTTHHCCCTTSCCHHHHCHHHHHGGGTBSS-SSSSCCHCHHHHHHHHHH CS
  Phosphorylase  97 eeeeeeklkvkwvdeeevlavpydvpvvGyktktvntLrLwsakaseefdleafnegdyikaveekneaeniskvLYPndsteegkeLrLkQqYfl 192
                    +e +    k++w+++ee++a +yd  ++G++t+ +ntLrLwsa+as+e++l +fn+gdy +ave+kn++en+s+vLYP+dst++g+eLrL+Q+Yfl
     CTQ30377.1 198 QEGK----KTRWIETEEIIAEAYDQIIPGFDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFL 289
                    8655....689************************************************************************************* PP

                    HHHHHHHHHHHHHTCTTHGGGHHHHEEEEEESSTTTTHHHHHHHHHHHCC---HHHHHHHHCCCEEEEE--SSGGGS-EEEHHHHHHHSHHHHHHH CS
  Phosphorylase 193 vsaslqdilrrfkkkkkdleelpekvaiqlnDtHPalaipelmriLvdeeglewdeaweitkktfaytnhtvlpealekwpvellekllprhleii 288
                    vsa++qdil+r+   +k++++l++k+ai+lnDtHP+l+ipelmr+L+de++++wdea+e+t ++f+ytnht+++eale+wpv++l k+lprhl+ii
     CTQ30377.1 290 VSATVQDILSRHYMLHKTYDNLADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDEAFEVTCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQII 385
                    ************************************************************************************************ PP

                    HHHHHHHHHHHHHHSTT-HHHHHHHSSEE..TSCEEEHHHHHHHCCSEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-CHHHCCCTSHHH CS
  Phosphorylase 289 eeinerfleevekklpedeeklerlsiie..eekkvrmanlaivgshsvngvaalhsellkkevlkdfyelypekfnnktnGitprrwlllanpel 382
                     ein+ fl+++++++p+d++ l+r+sii+  + ++vrma la+v+sh+vngv++lhs+l+ ++++++f++++p +f n+tnG+tprrwl+lanp l
     CTQ30377.1 386 FEINDYFLKTLQEQYPNDTDLLSRTSIIDesNGRRVRMAWLAVVVSHKVNGVSELHSRLMVESLFAEFAKIFPMRFINVTNGVTPRRWLALANPPL 481
                    *****************************87779************************************************************** PP

                    HHHHHHHCSSGGCCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTT CS
  Phosphorylase 383 aelitekigeewvkdleeLkkLekladdkefleelaeikqenKerlaelikekegvevdpeslfdvqvkRlheYkRqlLnvLhiitlYneikenpe 478
                    +++++e+ig++w +dl++L++L+++ d + + ++++++k enK+rla++i+++ +v v+p++lfdvq+kR+heYkRql+nvLh+it+Yn+ik++p+
     CTQ30377.1 482 SKVLDEHIGRTWRTDLSQLDELKQHIDYPMVNQAVRQAKFENKQRLASYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPQ 577
                    ************************************************************************************************ PP

                    S----EEEEEE----TT-HHHHHHHHHHHHHHHHHCC-TTTCCCEEEEEETT-SHHHHHHHGGG-SEEEE---TTTSSS-SHHHHHHHTT-EEEEE CS
  Phosphorylase 479 kkvvprtvifggkaapgYalAkkiiklinsvaevvnndpevkdklkvvflenynvslaekiipaadlseqistagkeASGTgnmkfmlnGaltigt 574
                    +++vpr+ if+gkaa++Y++Ak+ii+lin+va+v+nndp+++dklkvvf++ny+vsla+ iipaadlseqis+ag+eASGT+nmkf+lnGaltigt
     CTQ30377.1 578 AEWVPRVNIFAGKAASAYYMAKHIIHLINDVAAVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGT 673
                    ************************************************************************************************ PP

                    SSTCHHHHHHHH-GGGSEEES-BHHHHHHHHHHT--HHHHHHH-HHHHHHHHHHHCTTTTTTSTTTTHHHHHHHCTCC-TT-CHHHHHHHHHHHHH CS
  Phosphorylase 575 lDGanvEiaeevgeenifiFGltaeeveelkkkgynpkelyekdpelkevldalesgtfsekekeefkelvdsllekkDeylvlaDfesYveaqek 670
                    lDGanvE++e+vgeenifiFG+taeeveel+++gy+p+e+ye+d+el+++l ++ +g+fs+ e+ ++++l+dsl++  D+y vlaD++sYv++q++
     CTQ30377.1 674 LDGANVEMQEHVGEENIFIFGNTAEEVEELRRSGYKPREYYEQDEELHQALTQIGTGVFSPAEPGRYRDLLDSLINFGDHYQVLADYRSYVDCQDR 769
                    ************************************************************************************************ PP

                    HHHHHCSHHHHHHHHHHHHHCGGGGBHHHHHHHHHHHTTTS CS
  Phosphorylase 671 veeaYkdkkewakksilniaksgkFssDrtikeYaeeiWkv 711
                    v+e Y++ +ewa k++lnia++g+FssDrti+eYa+ iW++
     CTQ30377.1 770 VDELYQNPEEWAYKAMLNIANMGYFSSDRTIQEYAKYIWHI 810
                    ***************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 5858.96
//
Query:       CTQ30378.1  [L=477]
Description: glycogen synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-72  242.6   0.0    1.9e-71  240.6   0.0    1.8  2  Glyco_transf_5   Starch synthase catalytic domain
    2.3e-13   50.1   0.0    3.5e-13   49.4   0.0    1.2  1  Glycos_transf_1  Glycosyl transferases group 1
    3.8e-12   46.5   0.5    8.3e-11   42.2   1.6    2.5  2  Glyco_transf_4   Glycosyltransferase Family 4
    5.3e-10   40.0   6.6    2.9e-08   34.3   3.7    3.1  3  Glyco_trans_4_4  Glycosyl transferase 4-like domain
      2e-06   28.3   0.0    3.8e-06   27.4   0.0    1.4  1  Glyco_trans_1_4  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.6   0.0   5.3e-75   1.9e-71       1     244 []       2     234 ..       2     234 .. 0.92
   2 ?   -0.7   0.0      0.26   9.5e+02      13      24 ..     396     407 ..     391     415 .. 0.82

  Alignments for each domain:
  == domain 1  score: 240.6 bits;  conditional E-value: 5.3e-75
  Glyco_transf_5   1 kilfvasEvaplaktGGLadvvgaLpkaLaklghdvrvilPrygaikeekkeleevaelskaaedevevevekvkvaklkkdgvdvyfldnpeff 95 
                     ++l+v+sE++pl ktGGLadv+gaLp a  ++g d rv+lP++++i++   +++ v++ +  ++        ++++   + +gv +y++d+p+++
      CTQ30378.1   2 QVLHVCSEMFPLLKTGGLADVIGALPAAQIAEGIDTRVLLPAFPDIRRGVVDAQVVTRRD-TFA-------GRITLLYGHFNGVGIYLIDAPHLY 88 
                     69*********************************************9875555555422.222.......34556666669************* PP

  Glyco_transf_5  96 dreg.lYgdk.gedyednaerfalfsraalellekl..gwkpdvihahDWhtalvpallkelykerglfkkiktvftiHNlayqgrfpkdelaal 186
                     dr+g +Y+d+ ++ y+dn  rfal++++  e++  l   w+pdv+hahDWh++l pa+l++  +       +k+vft+HNlayqg+f +++++ +
      CTQ30378.1  89 DRPGsPYHDTnQHAYPDNVLRFALLGWVGSEMASGLdpFWRPDVVHAHDWHAGLTPAYLAARGRP------AKSVFTVHNLAYQGMFYSWHMNDI 177
                     ***********************************986679********************9754......************************ PP

  Glyco_transf_5 187 glpaedfekldglefygkvnflkagivyadavttVSptyakEiltpefggglegllre 244
                     +lp++ + +++glef+g+++flkag++yad++t+VSptya+Ei++p++ +g+egllr+
      CTQ30378.1 178 ELPWSFY-NMHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQYAYGMEGLLRQ 234
                     ***9876.8**********************************************985 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.26
  Glyco_transf_5  13 aktGGLadvvga 24 
                      +tGGLad v++
      CTQ30378.1 396 RRTGGLADTVAD 407
                     68******9975 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   9.9e-17   3.5e-13      11     155 ..     288     438 ..     281     451 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 9.9e-17
                      TTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBS CS
  Glycos_transf_1  11 knekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEg 104
                       ++k +++ +v+rl+ +Kg+dl+++a++ l +q   ++ l+ aG  +   +   la+++e   +v +     +   + ++  ad++++ps+ E+
       CTQ30378.1 288 VDDKAPLFAVVSRLTSQKGLDLVLEALPGLLEQ-GGQLALLGAG--DPVLQEGFLAAAAEHPGKVGVQIGYHEAFSHRIMGGADVILVPSRFEP 378
                      67899*************************988.7777777777..555555566666666666666555554567889999************ PP

                      S-HHHHHHHHTT--EEEETTTTHCHHCHTTT.........SEEEE-TT-HHHHHHHHHHH CS
  Glycos_transf_1 105 fGivllEAmaaglpviasnaggpaevvkdge.........tGllvkpnnaealaeairkl 155
                       G++ l  +++g+  ++  +gg+a++v+d           tG++++  na +l +air++
       CTQ30378.1 379 CGLTQLYGLKYGTLPLVRRTGGLADTVADSSlenladglaTGFVFEDSNALSLLRAIRRA 438
                      *********************************************************986 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   1.6   2.3e-14   8.3e-11      70     150 ..     118     221 ..      16     249 .. 0.72
   2 ?    0.0   0.0      0.21   7.4e+02     124     145 ..     357     378 ..     347     390 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 2.3e-14
  Glyco_transf_4  70 re.........kpDvvHahspaalga.allalrrrlgiplVltvHglye..............krllkarlkplsrllralerrllrradrviav 140
                      e         +pDvvHah+++a++  a+la+r  + ++ V+tvH+l++              ++  ++ ++++ +    +++  l  ad+++av
      CTQ30378.1 118 SEmasgldpfwRPDVVHAHDWHAGLTpAYLAARG-RPAKSVFTVHNLAYqgmfyswhmndielPWSFYNMHGLEFNGQISFLKAGLYYADHITAV 211
                     22333333336************98626666665.**************************886677777777777788899999********** PP

  Glyco_transf_4 141 Seatadelre 150
                     S++ a+e+ e
      CTQ30378.1 212 SPTYAREITE 221
                     ******9976 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.21
  Glyco_transf_4 124 ralerrllrradrviavSeata 145
                     +a+  r++  ad ++++S+++ 
      CTQ30378.1 357 EAFSHRIMGGADVILVPSRFEP 378
                     56778899**********9975 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   3.7     8e-12   2.9e-08       1     145 [.      17     220 ..      17     226 .. 0.54
   2 !    4.8   0.0    0.0097        35      88     140 ..     322     377 ..     292     389 .. 0.74
   3 ?   -2.5   0.0       1.7   6.1e+03      57      75 ..     429     446 ..     385     455 .. 0.56

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 8e-12
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapg.....................apeleedgvrvhrlpvprrpsplad.......laal.....r 61 
                      gG + ++ +l +a+ a+G + +vl pa +                           + +gv ++ +++p+  +++++       +a++     +
       CTQ30378.1  17 GGLADVIGALPAAQIAEGIDTRVLLPAFPDIrrgvvdaqvvtrrdtfagritLLYGHFNGVGIYLIDAPHLYDRPGSpyhdtnqHAYPdnvlrF 110
                      7888888999999999999999999655555233333333333222222222111224566666666665544333322233333333555555 PP

  Glyco_trans_4_4  62 alrrllrqr.........rerpdvvhahsptaglaa.rlarrrrgiplvvtlhglllrrg.......sgavrrlyraler...........rll 127
                      al +++             +rpdvvhah+++agl    la+r+r ++ v+t+h+l++++           +++ +  ++            + l
       CTQ30378.1 111 ALLGWV--GsemasgldpFWRPDVVHAHDWHAGLTPaYLAARGRPAKSVFTVHNLAYQGMfyswhmnDIELPWSFYNMHGlefngqisflkAGL 202
                      555555..12344445559***********987544134444888999*****88766444222222111222222222233344444444777 PP

  Glyco_trans_4_4 128 rradavlvvseaeaeelr 145
                        ad++++vs+  a+e++
       CTQ30378.1 203 YYADHITAVSPTYAREIT 220
                      778888888888887776 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0097
  Glyco_trans_4_4  88 arlarrrrgiplvvtlhgll..lrrg.sgavrrlyralerrllrradavlvvseae 140
                      + la +++g p++++ + ++   ++g  g +  +  a+ +r++ +ad++lv+s++e
       CTQ30378.1 322 GQLALLGAGDPVLQEGFLAAaaEHPGkVGVQIGYHEAFSHRIMGGADVILVPSRFE 377
                      55666677888888887433113333477777888999***************986 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.7
  Glyco_trans_4_4  57 laalralrrllrqrrerpd 75 
                      l+ lra rr++ + + rp 
       CTQ30378.1 429 LSLLRAIRRAF-VLWSRPS 446
                      44446666665.5566655 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0     1e-09   3.8e-06       2     130 ..     293     437 ..     292     439 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1e-09
                      EEEEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---.....HHHHHHHT..T-T.T.EEEE---TH.HHHHHHH-SEEEE--..---SHH CS
  Glyco_trans_1_4   2 pvilfvGrleenvkgvdllleavpllrkkdvrlvivGdgp...rpeeleelaa..gleer.veftGfved.laellaaadvfvaPs..egfglk 86 
                      p +  v+rl   +kg+dl+lea+p l+++  +l + G g+   ++  l + a+  g   +  +  G+ e    +++  adv ++Ps  e +gl+
       CTQ30378.1 293 PLFAVVSRL-TSQKGLDLVLEALPGLLEQGGQLALLGAGDpvlQEGFLAAAAEhpG---KvGVQIGYHEAfSHRIMGGADVILVPSrfEPCGLT 382
                      5677899**.556***********99988667777776633433233333333332...2134456665569999***********999***** PP

                      HHHHHHTT-EEEE-TGGGTTT--...T........TSSEE--TT-HHHHHHHHHH CS
  Glyco_trans_1_4  87 llEamaaglpvVatdvggiaevv...g........engllvppgdpealaeailr 130
                       l  + +g+   + ++gg+a++v             +g+++++ ++ +l +ai r
       CTQ30378.1 383 QLYGLKYGTLPLVRRTGGLADTVadsSlenladglATGFVFEDSNALSLLRAIRR 437
                      *********************9986414445444557899997778888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3736.38
//
Query:       CTQ30379.1  [L=431]
Description: glucose-1-phosphate adenylyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-70  235.7   0.0      7e-70  235.4   0.0    1.1  1  NTP_transferase  Nucleotidyl transferase
    3.6e-09   37.2   0.0    5.9e-09   36.5   0.0    1.4  1  NTP_transf_3     MobA-like NTP transferase domain
  ------ inclusion threshold ------
      0.039   12.9   0.0       0.52    9.2   0.0    2.0  2  Fucokinase       L-fucokinase
       0.18   11.6   2.7       0.69    9.7   0.0    2.8  3  Hexapep          Bacterial transferase hexapeptide (six repea


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.4   0.0   1.6e-73     7e-70       2     246 ..      22     291 ..      21     293 .. 0.96

  Alignments for each domain:
  == domain 1  score: 235.4 bits;  conditional E-value: 1.6e-73
                      EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT.......SEEEEEEESS--.... CS
  NTP_transferase   2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg.......vevlialepegk.... 84 
                      a+ILaGG+GtRL +Lt ++ak++v+++gk r+i++ ls+++nsgi++ i v+tq++s+++ +++++g+ f        v++l+a+++ +     
       CTQ30379.1  22 ALILAGGRGTRLKDLTIKRAKPAVHFGGKFRIIDFALSNCINSGIRR-IGVITQYQSHTLVQHIQRGWSFFseemnefVDLLPAQQRVHGenwy 114
                      89*********************************************.99*****************98879***************999999* PP

                      .BGGHHHHHTHHHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEECTTSBEEEEECS-SSHSH...... CS
  NTP_transferase  85 .gtAdAvalaaelledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGvieadeegrverfvEKPkeaka...... 171
                       gtAdAv+++++++ ++k  e+v++L+gDh++k++y++++ +++ek+a++tv++++vp eea+++Gv+ +de++++++fvEKP++++a      
       CTQ30379.1 115 rGTADAVTQNLDIISRYK-AEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIEEASAFGVMAVDENEKIIEFVEKPANPPAmptdpt 207
                      ******************.7************************************************************************** PP

                      CSEECCSEEEEETTHHHHHHH.CCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE.........-EEEXSSHHHHHHHHHHHH CS
  NTP_transferase 172 selassGiYvfnsevllflak.dleelkrgedeitdilpkaleegkvalaflfkdae.........yWsDvGtldslleanekla 246
                      ++las+GiYvf+  +l +l++ d ++ ++++d+++di+pk++e+g  a+a+ f  ++         yW+DvGtl+++++an +la
       CTQ30379.1 208 KSLASMGIYVFDAAYLYELLEeDDRNENSSHDFGKDIIPKITEAGM-AYAHPFPLSCvqsdpnaepYWRDVGTLEAYWKANLDLA 291
                      99******************************************95.5567888867999*********************9986 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   1.3e-12   5.9e-09       1     121 [.      22     166 ..      22     228 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.3e-12
                   EEEEEESS-TTTT.....TTHHHHCCCCC.CHHHHHHHHHCTT.-CEEEEECSHC..HHHH.................HHTTC.TS-EEE-TTSS-S CS
  NTP_transf_3   1 aviLAGGrSsRmg.....gdKallplggk.pllervldalraagvdevvvvggde..evla.................alarl.gvrvvededpgkg 71 
                   a+iLAGGr++R++     + K+ + +ggk ++++ +l +   +g++++ v+++++   + +                 +   l   + v+ e++++g
    CTQ30379.1  22 ALILAGGRGTRLKdltikRAKPAVHFGGKfRIIDFALSNCINSGIRRIGVITQYQshTLVQhiqrgwsffseemnefvD--LLpAQQRVHGENWYRG 116
                   79**********7443336*******99989**********************96332222455555555555554332..232355688899**** PP

                   HHHHHHHHHHHH...SSSCEEEEETT-TT--HHHHHHHHHCHHHHTSSEEEE CS
  NTP_transf_3  72 plaslaaalraaa..dadavlvlacDmPlltpelverllaaaaasgadvvvp 121
                   ++ ++   l+ ++  +a++v++la+D+++ +++  + l+++ + +ga+++v+
    CTQ30379.1 117 TADAVTQNLDIISryKAEYVVILAGDHIY-KQDYSRMLIDHVE-KGARCTVA 166
                   *********9866679***********88.8888888888876.55555444 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.025   1.1e+02      43     114 ..     126     193 ..     118     227 .. 0.80
   2 ?    9.2   0.0   0.00012      0.52     271     332 ..     340     398 ..     296     417 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.025
  Fucokinase  43 dfpkrm.kpGvlvtssDvlllfdseeisfdka....gvtalavpstldigtnHGVfvlddqsseeeeleirsvkkfl 114
                 d+++r   + v+++++D +   d + + +d+       t+  +p +++ ++  GV+ +d++         +++ +f+
  CTQ30379.1 126 DIISRYkAEYVVILAGDHIYKQDYSRMLIDHVekgaRCTVACMPVPIEEASAFGVMAVDEN---------EKIIEFV 193
                 566655467789999999997777777777666677788889*****************99.........4444444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00012
  Fucokinase 271 kesavvinSvlessvsvgegsviehsslkgnvsigsnsivsglelesseeslelpddtilqt 332
                  +++vv++Svl ++v+v+  + i +  l ++v +g  + +  + +++    + +p+ +++ +
  CTQ30379.1 340 ISGSVVVQSVLFPRVRVNSFCNIDSAVLLPDVWVGRSCRLRRCVIDRA---CVIPEGMVIGE 398
                 57899****************************************985...68999999865 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2       0.7   3.1e+03      13      33 ..     337     345 ..     331     347 .. 0.48
   2 ?    9.7   0.0   0.00015      0.69       6      32 ..     358     383 ..     353     384 .. 0.85
   3 ?    3.3   0.1     0.017        74       8      26 ..     382     400 ..     380     401 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.7
                 TEEEETTEEE-TTEEEETTEE CS
     Hexapep  13 faviggnVkIGdnvkIgagvv 33 
                 +            ++I   vv
  CTQ30379.1 337 G------------CIISGSVV 345
                 3............44433333 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00015
                 TTEEE-TTEEEETTEEE-TTEEEETTE CS
     Hexapep   6 snvlIgpfaviggnVkIGdnvkIgagv 32 
                 s + I+  av++++V +G+ +++ ++v
  CTQ30379.1 358 SFCNID-SAVLLPDVWVGRSCRLRRCV 383
                 567777.8***************9987 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.017
                 EEE-TTEEEETTEEE-TTE CS
     Hexapep   8 vlIgpfaviggnVkIGdnv 26 
                 ++I+  +vi ++ +IG+n+
  CTQ30379.1 382 CVIDRACVIPEGMVIGENA 400
                 8999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3487.29
//
Query:       CTQ30380.1  [L=658]
Description: glycogen debranching enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-46  153.8   1.9    1.8e-45  152.6   1.9    1.7  1  GlgX_C          Glycogen debranching enzyme C-terminal domain
    3.8e-18   65.6   0.0      1e-17   64.2   0.0    1.8  1  CBM_48          Carbohydrate-binding module 48 (Isoamylase N-
    1.4e-15   57.7   0.0      9e-06   25.5   0.0    3.1  3  Alpha-amylase   Alpha amylase, catalytic domain
     0.0017   17.6   0.0     0.0029   16.9   0.0    1.4  1  Glyco_hydro_31  Glycosyl hydrolases family 31


Domain annotation for each model (and alignments):
>> GlgX_C  Glycogen debranching enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.6   1.9   4.1e-49   1.8e-45       1      85 []     571     655 ..     571     655 .. 0.99

  Alignments for each domain:
  == domain 1  score: 152.6 bits;  conditional E-value: 4.1e-49
      GlgX_C   1 qegDgnvqWLnaegqplsaeeWeqgakrlqilLsdrwLitlnateevaelvLPeGeWravpPfagednpvvlavWhgpahgvCvf 85 
                 qegDgnv+WLn+++qpl+a+eW+qga+++qi+LsdrwL+tlnat+ev+++vLPeGeWravpPfagednpv++avWhgpahgvCvf
  CTQ30380.1 571 QEGDGNVRWLNRNAQPLTAAEWQQGAACMQIQLSDRWLLTLNATAEVVDMVLPEGEWRAVPPFAGEDNPVIMAVWHGPAHGVCVF 655
                 8***********************************************************************************8 PP

>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   2.3e-21     1e-17       1      83 [.      11      96 ..      11      97 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 2.3e-21
                TSEEEEESSCEEEEEEEE-TTSSEEEEEECGTTTEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEETT....S....CEEEE--TT CS
      CBM_48  1 plGahvsedekgvnfrvwapnAekVslvldfnnwdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgps....g....ekklllDPy 83
                plGa+++++  gvnf++++ +Ae+V+l++++++ ++++++l   r+g++W+  l  + ++g lrY+yrv+gp+    g    + kll+DP 
  CTQ30380.1 11 PLGASYDGK--GVNFALFSAHAERVELCVFDEQGNEQRFDLP-ARSGDIWHGWLA-AAGPG-LRYGYRVHGPWdpaqGhrfnPAKLLIDPS 96
                79****887..*******************************.69**********.55557.8**********87774677799*****95 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0     2e-09     9e-06      10      89 ..     185     278 ..     182     302 .. 0.77
   2 !   16.7   0.0   9.1e-07    0.0041     143     195 ..     305     358 ..     283     375 .. 0.85
   3 !   11.8   0.1   2.8e-05      0.13     274     333 ..     464     522 ..     434     526 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2e-09
                    CCCCCCCT-SCEEE-B-CE............-S-TTTTSS-SCECCE-CCC--C.....CCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCH CS
  Alpha-amylase  10 LdYlkeLGvtaiwlsPifk............spqadhgYdiadytkidpefGtn.....edlkeLiskahekgikvilDlVvNHtsdehewfkesl 88 
                    + Y k+LG++a+ l P+ +            s  ++ gY    + ++dp++        +++   ++++h+ gi vilD+V NH+++  +   + +
     CTQ30380.1 185 IAYFKSLGISALELLPVAQfaseprlqrmglS--NYWGYNPLAWFALDPRYASDpdralDEFRDAVKALHAAGIEVILDIVLNHSAE-IDLEGPTV 277
                    67****************9*******999654..599**************9752222267899999*****************875.33334444 PP

                    H CS
  Alpha-amylase  89 k 89 
                    +
     CTQ30380.1 278 S 278
                    4 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 9.1e-07
                    BB-TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCCHCCHCCHHHHH CS
  Alpha-amylase 143 dLnteneevrkelkdvvkfwlekg.idGfRlDvvkhvskvealesngeflheft 195
                     Ln  ++ v++   + ++fw+++  +dGfR D ++ +  +++++++++  + ++
     CTQ30380.1 305 TLNLSHPGVVEWARQCLRFWVDEChVDGFRFDLASVMGRTPEFRQDAPLFEAIR 358
                    699999*****************99**************999999988877665 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 2.8e-05
                    -CCCTTCEEES--TTS--HHHHTTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCCCT--- CS
  Alpha-amylase 274 eeaaeeavtflgnHDqeRilsrlgddsaeaekklklaaillltlrGvpviYyGeEigmtg 333
                    e+ + +++++ +nH  e +  +++  + ++  +++++++ ll+ +G+p+   G+E+g + 
     CTQ30380.1 464 ENRDGTNNNYSNNHGIEGLEANFAVIE-RRRASAHALLTTLLLAQGTPMLLAGDEQGHSQ 522
                    3368899*****************999.5789999999999****************875 PP

>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.4e-07    0.0029       5     270 ..     165     551 ..     162     557 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.4e-07
                     -SSHHHHHHHHHHHH-------GG.GGSEEEE-TT--SHHHHHHHHHHHHHTT.........--EEEEEESCGGSBTTCCTB-.TTTSS-H.HHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
  Glyco_hydro_31   5 GptpkevvkqyteltGrpalpPrw.alGfhqsrygykdeeeveevvdkfreag.........iPldvivlDidymdkrkdftwdkerFpdp.kem 88 
                      p++ e+++  ++  G+pa+++++ +lG    +        v++++++ r ++          Pl  + lD +y         d++r  d+ ++ 
      CTQ30380.1 165 NPQLPEAIRGTYKALGHPAMIAYFkSLGISALE-----LLPVAQFASEPRLQRmglsnywgyNPLAWFALDPRY-------ASDPDRALDEfRDA 247
                     677888899999999999999998458876333.....334444444444444000001111355555555555.......45544433344778 PP

                     HHHHHHTT-EEEEEE-....SEE.E.-T.....TSHHHHHHHHTTSBECCCCCSTCECTSSEEEEB-TTSHHHHHHHHHHHHHHHC.TCT--EEE CS
                     xxxxxxxxxxxxxxxx....xxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Glyco_hydro_31  89 vdelhekgvklvvivd....paiskqee.....eyeafdegkekgvflknkdgsykgkwpgstafpDftnpearewwkkelkkfll.dlgvdglw 173
                     v+ lh++g+++++ +     +      e      +   + ++++ ++  ++dg ++++w g ++ +++ +p + ew   ++ +f + +  vdg+ 
      CTQ30380.1 248 VKALHAAGIEVILDIVlnhsA------EidlegPTVSLRGIDNRSYYWVREDG-DYHNWTGCGNTLNLSHPGVVEWAR-QCLRFWVdECHVDGFR 334
                     999999999977655422223......23344455556666677776665555.677799***************766.5556666269****** PP

                     E-STTTB.SCCCCHHHHCCCTS......................................................................... CS
                     xxxxxxxxxxxxxxxxxxxxxx......................................................................... RF
  Glyco_hydro_31 174 iDmnepsnfeegsdseekeake......................................................................... 195
                      D         g ++e +++ +                                                                         
      CTQ30380.1 335 FDLASVM----GRTPEFRQDAPlfeairrdsvlsqvkliaepwdigpggyqvgnfpplfaewndhfrdsarrfwlqqnvslgdfaqrfaassdlf 425
                     **55532....222222222224667777889999999999999999999999999999999999999999999999999999999999999999 PP

                     ......................................CETTCCHHHHCCCHHHHHHHHHH...HHHHHHTT.........TST-EEE.ESSEET CS
                     ......................................xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxx.........xxxxxxx.xxxxxx RF
  Glyco_hydro_31 196 ......................................tkaagshydvhnlygllmakaty...eglkekkp.........kkrpfil.tRstfa 239
                                                           ++++g+++++ n  g+   +a +   e++++  +         +  p++l     + 
      CTQ30380.1 426 ardgkppsatvnlvtahdgftlrdcvcfnqkhneangeENRDGTNNNYSNNHGIEGLEANFaviERRRASAHallttlllaQGTPMLLaGDEQGH 520
                     99999999999999999999999988888776555444222222333333333333333331114443333367777777755554440344444 PP

                     TGGGCTEEE--S-BSSHHHHHHHHHHHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 240 GsqryaahWsGdnassWeslresipallsfs 270
                     +++     +  dna +W ++r+  p+l++f+
      CTQ30380.1 521 SQHGNNNAYCQDNALTWLDWRQANPGLTAFT 551
                     5555558888888888888888888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 4960.85
//
Query:       CTQ30381.1  [L=728]
Description: 1,4-alpha-glucan branching enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-30  105.9   0.2    1.5e-25   89.3   0.1    2.8  3  CBM_48           Carbohydrate-binding module 48 (Isoamylase N
    5.2e-22   78.1   0.0    9.8e-22   77.2   0.0    1.5  1  Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
    6.3e-11   42.4   0.1    1.1e-07   31.7   0.0    2.4  3  Alpha-amylase    Alpha amylase, catalytic domain
  ------ inclusion threshold ------
      0.012   13.9   0.0      0.018   13.3   0.0    1.2  1  Glyco_hydro_70   Glycosyl hydrolase family 70
       0.11   12.7   0.1       0.75   10.0   0.1    2.3  2  AMPK1_CBM        Glycogen recognition site of AMP-activated p


Domain annotation for each model (and alignments):
>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.6e-05     0.059       2      83 ..      25      99 ..      24     100 .. 0.83
   2 !   89.3   0.1   4.2e-29   1.5e-25       2      84 .]     125     207 ..     124     207 .. 0.94
   3 ?   -3.2   0.0       3.1   1.1e+04      47      83 ..     592     624 ..     584     625 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.6e-05
                SEEEEESSCEEEEEEEE-TTSSEEEEEECGTTTEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEETTSCEEEE--TT CS
      CBM_48  2 lGahvsedekgvnfrvwapnAekVslvldfnnwdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgpsgekklllDPy 83
                lG+h+++   g ++r   p A++V ++  + +++  +++    ++ g+++ +lp   ++ + rY+  v+ + g+++l+ DPy
  CTQ30381.1 25 LGMHRTDA--GLEVRALLPDATDVWVIEPKTGRKVGKLECL--DSRGFFSGVLP-RRKN-AFRYQLAVTWH-GQQNLIDDPY 99
                89***988..********************99544444444..469********.5664.56999988877.6********9 PP

  == domain 2  score: 89.3 bits;  conditional E-value: 4.2e-29
                 SEEEEESS.C.EEEEEEEE-TTSSEEEEEECGTTTEEECCB-EEECGGCEEEEEEETTSTTTT.EEEEEEEETTSCEEEE--TT- CS
      CBM_48   2 lGahvsed.e.kgvnfrvwapnAekVslvldfnnwdaeeiplkrrrtggvWelflpgdlphgslrYkyrvkgpsgekklllDPya 84 
                 lGah   + + +g++f+vwapnA++Vs+v++fn wd++++p++ r+++g+Welf+p   ++g ++Yk+++   +g+ ++++DPya
  CTQ30381.1 125 LGAHAATMdGvTGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRFRKESGIWELFVP-GAHNG-QLYKFELIDAHGNLRVKADPYA 207
                 9***9988879*********************************************.55557.6********************8 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.1
                 GCEEEEEEETTSTTTT.EEEEEEEETTSCEEEE--TT CS
      CBM_48  47 ggvWelflpgdlphgslrYkyrvkgpsgekklllDPy 83 
                 g+ W+  +++ +  + l+  yr ++     +l  DPy
  CTQ30381.1 592 GDNWHHGVQRLVR-D-LNHTYRHHKAL--HELDFDPY 624
                 6678877776555.3.56777777665..45556777 PP

>> Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.0   2.7e-25   9.8e-22       1      95 [.     628     725 ..     628     726 .. 0.89

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 2.7e-25
                      EEEEEETTSSEEEEEECT.TT.EEEEEEE-SSSSEEECEEESSSSSEEEEETTCTTSGCCTTT-SSTSS-EEEECT..TCBSEEEEEEESTTEE CS
  Alpha-amylase_C   1 wvsakdeenkviaFeRgd.ge.kllvvfNfhpsnsrqdyrvgvpaagkyrdvlntdaeeyggsglgntgkvvtvdd..dgransltltlpprsa 90 
                      w   +d+e++v++F+R+d  + +++v+ Nf+p ++r+dyr+g++++g++r++lntd+ +y gs++gn g v +     +gr++sl+ltlpp+++
       CTQ30381.1 628 WLVVDDHERSVFVFVRRDrAGnEIIVASNFTP-VPRHDYRFGINQPGRWREALNTDSMHYHGSNQGNGGVVESDAIasHGREHSLSLTLPPLAT 720
                      88899*************95559*********.******************************766666555544488**************** PP

                      EEEEE CS
  Alpha-amylase_C  91 lvlkv 95 
                      ++l +
       CTQ30381.1 721 IWLVR 725
                      *9975 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   3.2e-11   1.1e-07      10      78 ..     273     342 ..     268     373 .. 0.86
   2 !    8.5   0.0   0.00036       1.3     145     191 ..     376     423 ..     345     468 .. 0.77
   3 ?   -3.4   0.0       1.5   5.3e+03     290     328 ..     533     571 ..     486     574 .. 0.70

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 3.2e-11
                    CCCCCCCT-SCEEE-B-CE-S.-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC-- CS
  Alpha-amylase  10 LdYlkeLGvtaiwlsPifksp.qadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHts 78 
                    ++Y k +G+t + l P+ + p +   gY  +  ++ + +fGt +d+   i++ah+ g+ vilD V+ H  
     CTQ30381.1 273 VPYAKWMGFTHLELLPVNEHPfDGSWGYQPTGLYAPTRRFGTRDDFRYFINAAHAAGLNVILDWVPGHFP 342
                    46*****************9934689******************************************74 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00036
                    -TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCCHCCHCCH CS
  Alpha-amylase 145 nteneevrkelkdvvkfwlekg.idGfRlDvvkhvskvealesngefl 191
                    n+ + ev ++l   + +w+e++ id +R+D+v  +  ++  ++ ge++
     CTQ30381.1 376 NYGRREVSNYLVGNALYWIERFgIDALRVDAVASMIYRDYSRKAGEWI 423
                    888999*******9*******99********99888767766666655 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.5
                    --HHHHTTSSTTTTHHHHHHHHHCCCTSSSEEEEETTCC CS
  Alpha-amylase 290 eRilsrlgddsaeaekklklaaillltlrGvpviYyGeE 328
                    + il r+  d+ ++  +l+++  +l+ ++G    + G+E
     CTQ30381.1 533 KSILDRMPGDAWQKFANLRAYYGWLFAFPGKKLLFMGNE 571
                    445555555555556777788888888888888888887 PP

>> Glyco_hydro_70  Glycosyl hydrolase family 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     5e-06     0.018     634     665 ..     309     340 ..     299     350 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5e-06
  Glyco_hydro_70 634 pnkyGtaddlvdaikalhksGikviadwvpdq 665
                     + ++Gt dd++  i a h+ G++vi dwvp  
      CTQ30381.1 309 TRRFGTRDDFRYFINAAHAAGLNVILDWVPGH 340
                     5689**************************75 PP

>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00021      0.75       6      51 ..     142     190 ..     138     204 .. 0.70
   2 ?   -1.4   0.0      0.81   2.9e+03      45      65 ..     661     681 ..     646     695 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00021
   AMPK1_CBM   6 kWkggGkkVyvtGsfnnW.kkkipLk..ksekdfsvilkLpeGthqykF 51 
                  W  ++++V v G+fn W  ++ p++  k+++ +++++   +  + ykF
  CTQ30381.1 142 VWAPNARRVSVVGQFNYWdGRRHPMRfrKESGIWELFVPGAHNGQLYKF 190
                 5999**************4466788864444555554433333333666 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.81
   AMPK1_CBM  45 GthqykFiVDgewrvdpdlpt 65 
                  +h y+F ++   r+ + l+t
  CTQ30381.1 661 PRHDYRFGINQPGRWREALNT 681
                 5799***99966555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 5533.31
//
Query:       CTQ30382.1  [L=368]
Description: aspartate-semialdehyde dehydrogenase, NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-61  207.5   0.0    2.1e-61  207.2   0.0    1.1  1  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
    5.9e-24   84.8   0.0    1.2e-23   83.8   0.0    1.5  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma


Domain annotation for each model (and alignments):
>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.2   0.0   2.4e-65   2.1e-61       1     184 []     145     354 ..     145     354 .. 0.98

  Alignments for each domain:
  == domain 1  score: 207.2 bits;  conditional E-value: 2.4e-65
                      HHHHHHCTT.EEEEEEEEEEEGGGCHHHHHHHHHHH.........................HHHHHHSTTS.CTTTSSHHTTSEESTCSTBTTT CS
  Semialdhyde_dhC   1 LkPLldalgelervivatyqavSGaGkkgvreLlkq.........................vaelqrsdeakpgvfgvpiagNlipyidkeedk 69 
                      L++L+++ + +e+v+vatyqa+SG+G++++reLl+q                         v+ l+rs e+++++fgvp+ag+lip+idk++d+
       CTQ30382.1 145 LGGLFAQ-DLVEWVSVATYQAASGGGARHMRELLSQmgqlhnhvaaeladpasaildierkVTSLTRSGELPVDNFGVPLAGSLIPWIDKQLDN 237
                      789***9.99************************************************************************************ PP

                      TCHCBHHHHHHHHHHHHHCTESC..SEEEEEEEESBSSEEEEEEEEEESSSHHHHHHHHHHHHCS.TTEEEEESS...HCHHSSHHHHTTCSSS CS
  Semialdhyde_dhC  70 gepetreelkavaetkkilefte..kvsatcvrVPvlrGhseavtiklklkdveveeveellaaa.pevkvvvne...eedrPtpaavaggtns 157
                      g  ++ree+k++aet+kil++++  +v ++cvrV++lr+hs+a+tiklk kdv++ +veellaa+ p++kvv+n+   +++++tpaav+g t++
       CTQ30382.1 238 G--QSREEWKGQAETNKILATSSviPVDGLCVRVGALRCHSQAFTIKLK-KDVSIPTVEELLAAHnPWAKVVPNDreiTMRELTPAAVTG-TLT 327
                      *..*****************99965555********************7.***************************************9.9** PP

                      EEEEEEEEETTCTTEEEEEEEEETTTT CS
  Semialdhyde_dhC 158 vsVGRirkdemgdeglklvvvgDNllk 184
                      ++VGR+rk++mg+e+l +++vgD+ll+
       CTQ30382.1 328 TPVGRLRKLNMGPEYLSAFTVGDQLLW 354
                      *************************98 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   1.4e-27   1.2e-23       1     119 [.       3     121 ..       3     123 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 1.4e-27
                     EEEEETTTSHHHHHHHHHHHC..TSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE.GGGGGCTT-SEEEE-SCHHHHHHHHHHHHHTTS. CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLee..hpevelvvllsssrsaGkklaeavkaleegkdlkved.vdeeelkevdivflalpagvskelapklaeagv. 91 
                     +v+++G++G+vG++l++++ e  ++++   v++s+s+  G++  +  +     +  +++d  d ++lk++di+++++++++++e++pkl+++g+ 
      CTQ30382.1   3 NVGFIGWRGMVGSVLMQRMVEerDFDAIRPVFFSTSQ-LGQPAPSFGG----STGGTLQDaFDLDALKALDIIVTCQGGDYTNEIYPKLRASGWq 92 
                     79*************9999886788888888999999.9999999966....899999999********************************** PP

                     .EEEESSSTTTTSTTSEBE-HHHHGGGGG CS
  Semialdhyde_dh  92 .kviDlssdfRlkddavyvlpevnreaik 119
                      ++iD++s +R+kdda+++l++vn++ i 
      CTQ30382.1  93 gYWIDAASSLRMKDDAIIILDPVNQDVIT 121
                     *************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2761.88
//
Query:       CTQ30383.1  [L=120]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 928.52
//
Query:       CTQ30384.1  [L=421]
Description: gluconate transporter, low affinity GNT 1 system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.4e-159  530.2  41.6   3.8e-159  530.1  41.6    1.0  1  GntP_permease    GntP family permease
    3.1e-17   62.7  36.3    4.8e-17   62.1  36.3    1.3  1  CitMHS           Citrate transporter
     0.0056   16.8   5.5     0.0056   16.8   5.5    2.9  3  Na_H_antiport_2  Na+-H+ antiporter family
  ------ inclusion threshold ------
       0.38   10.7   6.2        1.1    9.2   0.2    3.1  3  DUF4017          Protein of unknown function (DUF4017)


Domain annotation for each model (and alignments):
>> GntP_permease  GntP family permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  530.1  41.6  8.6e-163  3.8e-159      22     437 ..       1     416 [.       1     420 [. 0.99

  Alignments for each domain:
  == domain 1  score: 530.1 bits;  conditional E-value: 8.6e-163
  GntP_permease  22 lnafvaLllvsllvglvsGmpldkvvksiekGlGgtlGslaiiiglGamlGklledsGaaerialtlikklgkkkvqwalvlagfivgialFfevg 117
                    ++afvaL++vs+++gl+sGmpldk++ ++ekG+GgtlG+lai+++lGam+Gk+l+++Ga+++ia++++k++g++++++a+ lag+i++++lFfev+
     CTQ30384.1   1 MHAFVALMVVSIGAGLFSGMPLDKIAVTMEKGMGGTLGFLAIVVALGAMFGKILHETGAVDQIAVKMLKSFGHNRAHYAIGLAGLICALPLFFEVA 96 
                    79********************************************************************************************** PP

  GntP_permease 118 lvlLiplvfaiakeakisllklgiplvaalavvhgllpPhPgplavaellgadiGkvllyGlivaiptviiagpllkkflkevvkeeeelaeeaee 213
                    +vlLi+++f++a++++++l+kl+ipl+a++a+++++l P P+p+++a++++ad+G+++l+Gl+ aip +iiagpl+++f++++v+ +    ++++e
     CTQ30384.1  97 IVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLLPGPAPMLLASQMHADFGWMILIGLCAAIPGMIIAGPLWGNFISRYVELHIP--DDVTE 190
                    **************************************************************************************999..89999 PP

  GntP_permease 214 ksreekelPsfglslltillPvvlmlvktiaelllpkesaalevvefiGnpvvalliallvaiytlglrrgksikkvldileealksiaiilliig 309
                    ++  e ++Psfg+sl++illP+vl+ +ktia+ ++p +s+a+e++efiG+p++a+l+a+lvaiy l++r+g+ +++v++i+++al++++iill+ig
     CTQ30384.1 191 PHLGEGKMPSFGFSLALILLPLVLVGLKTIAARFVPVGSTAYEWFEFIGHPFTAILVACLVAIYGLAVRQGMAKDRVMEICGHALQPAGIILLVIG 286
                    ************************************************************************************************ PP

  GntP_permease 310 aGGafkqvlvdsgvgkalaellsnlelspillaflvaallrialGsatVaaltaaglvapiiaqlp..gvnlallvlaigaGslilshvnDagFWl 403
                    aGG+fkqvlvdsgvg al+e+l+++ l++++++f++aa++ri++GsatVa+lta+glv+p+i+ql+  g+++a l+++i+ Gs+++shvnDagFWl
     CTQ30384.1 287 AGGVFKQVLVDSGVGPALGEALTGMGLPIAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNysGAQMAALSICIAGGSIVVSHVNDAGFWL 382
                    *****************************************************************9999*************************** PP

  GntP_permease 404 vkeylgltvketlktwtvletilsvvgliivlll 437
                    + +++g++ ++tlktwt++etil+++g+i+ +++
     CTQ30384.1 383 FGKFTGASEAQTLKTWTMMETILGTTGAIVGMIA 416
                    *****************************99853 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1  36.3   1.1e-20   4.8e-17      14     298 ..       5     364 ..       1     366 [. 0.75

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 1.1e-20
                 xxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  14 vallvlvll............vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrdllvllvlltallsafvsndgvvlimip 100
                 val+v+++              +t+e+ + g    ++++++++ ++g++l etG++d +a k+l+ +g +r+   +++l+  +++  + + ++++++i+
  CTQ30384.1   5 VALMVVSIGaglfsgmpldkiAVTMEKGMGGTLGFLAIVVALGAMFGKILHETGAVDQIAVKMLKSFGHNRA-HYAIGLAGLICALPLFFEVAIVLLIS 102
                 4554444445555677777777788888888888888*******************************9888.99999999999777777********* PP

                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxx...................................... RF
      CitMHS 101 ivlslakrlkklppl.lliplalaaniggaltpiGtpttraa....arpglslpnllllal...................................... 156
                 +++s+a+  ++++++ l+ipl  + ++  a+++ G  + + a    a++g +++ +l+ a+                                      
  CTQ30384.1 103 VAFSMARH-TGTNLVkLVIPLFAGVAAAAAFLLPGPAPMLLAsqmhADFGWMILIGLCAAIpgmiiagplwgnfisryvelhipddvtephlgegkmps 200
                 *******7.777777699999999999998887776655555899977777777777755555555666666666666666666666666666666666 PP

                 ....xxxxxxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 157 ....llvgllplvllfmfgvalalpvnap..............................kvkkqkaiieaiarsllpvatilllaykkveWsvlllfaG 221
                     l+ +llplvl++++++a  +++                                 ++ ++ +++e + ++l p+++il             l++G
  CTQ30384.1 201 fgfsLALILLPLVLVGLKTIAARFVPVGStayewfefighpftailvaclvaiyglavrQGMAKDRVMEICGHALQPAGIIL-------------LVIG 286
                 6666666677888888777777777777788888888888888888888888888888788888889999999888777777.............5555 PP

                 xxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx RF
      CitMHS 222 vfll.vgaleqtGilealadllga.ggplvalalvlglial.lsafisnvavaalmapialgmap...algllspsplalala 298
                 ++++  ++l ++G++ al+++l+  g p +  a++++++a+ +++++++++va l+a +++   p   +l+++ ++  al ++
  CTQ30384.1 287 AGGVfKQVLVDSGVGPALGEALTGmGLP-I--AITCFVLAAaVRIIQGSATVACLTAVGLVM--PvieQLNYSGAQMAALSIC 364
                 55555*****************442433.3..5777777777***********999988876..5434555566666666555 PP

>> Na_H_antiport_2  Na+-H+ antiporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   5.5   1.2e-06    0.0056      19      85 ..       2      69 ..       1      72 [. 0.84
   2 ?   -2.6   0.5       1.4   6.4e+03      57      66 ..      96     105 ..      82     130 .. 0.52
   3 ?   -2.2   1.7         1   4.7e+03      21      47 ..     295     321 ..     278     367 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.2e-06
  Na_H_antiport_2 19 nvvlallisalvgGlvgglsleetieafasGlgggaevAlsyallGa.fAvaisksgltdllvkkvik 85
                     +  +al++ ++ +Gl++g++l+++  ++++G+gg        + lGa f  ++ ++g  d+++ k++k
       CTQ30384.1  2 HAFVALMVVSIGAGLFSGMPLDKIAVTMEKGMGGTLGFLAIVVALGAmFGKILHETGAVDQIAVKMLK 69
                     6689******************************998655555566637888999*****99999877 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.4
  Na_H_antiport_2  57 AlsyallGaf 66 
                      A+ +++  af
       CTQ30384.1  96 AIVLLISVAF 105
                      2222222222 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1
  Na_H_antiport_2  21 vlallisalvgGlvgglsleetieafa 47 
                      +++  ++  +g +++g++l   i+ f 
       CTQ30384.1 295 LVDSGVGPALGEALTGMGLPIAITCFV 321
                      444445555555555555544444332 PP

>> DUF4017  Protein of unknown function (DUF4017)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.014        63      17      51 ..      63      98 ..      59     109 .. 0.78
   2 ?    9.2   0.2   0.00025       1.1      20      48 ..     140     168 ..     137     181 .. 0.86
   3 ?   -2.8   0.1       1.4   6.3e+03       9      18 ..     243     252 ..     209     255 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.014
     DUF4017 17 iavilPaseGYntvgWkL.fvGqiYalPillitali 51
                iav +  s G+n   + + + G i alP+++ +a++
  CTQ30384.1 63 IAVKMLKSFGHNRAHYAIgLAGLICALPLFFEVAIV 98
                66666777788888877657899*******988775 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00025
     DUF4017  20 ilPaseGYntvgWkLfvGqiYalPillit 48 
                 +l as+ +   gW +++G   a+P ++i+
  CTQ30384.1 140 MLLASQMHADFGWMILIGLCAAIPGMIIA 168
                 67899999******************997 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.4
     DUF4017   9 lvYlivciia 18 
                  + l+ c++a
  CTQ30384.1 243 TAILVACLVA 252
                 3334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3048.89
//
Query:       CTQ30385.1  [L=176]
Description: gluconate kinase 2; gluconate transport, GNT I system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-12   45.6   0.0    9.2e-12   45.4   0.0    1.1  1  SKI              Shikimate kinase
    2.9e-07   30.7   0.0    4.6e-07   30.1   0.0    1.3  1  AAA_33           AAA domain
    4.6e-06   26.6   0.0    5.7e-06   26.3   0.0    1.1  1  APS_kinase       Adenylylsulphate kinase
    4.4e-05   24.0   0.0    6.5e-05   23.5   0.0    1.3  1  AAA_18           AAA domain
    0.00024   21.5   0.0    0.00052   20.4   0.0    1.4  1  AAA_16           AAA ATPase domain
     0.0009   19.5   0.0     0.0013   19.0   0.0    1.6  1  AAA_22           AAA domain
      0.004   16.7   0.0       0.83    9.1   0.0    2.3  2  Ploopntkinase1   P-loop Nucleotide Kinase1
     0.0057   16.4   0.0     0.0081   15.9   0.0    1.3  1  Cytidylate_kin   Cytidylate kinase
  ------ inclusion threshold ------
      0.026   14.6   0.0      0.039   14.1   0.0    1.5  1  Cytidylate_kin2  Cytidylate kinase-like family
      0.033   14.6   0.0      0.084   13.3   0.0    1.7  1  AAA_17           AAA domain
      0.035   13.3   0.0      0.037   13.3   0.0    1.3  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.041   14.3   0.0      0.049   14.1   0.0    1.6  1  AAA              ATPase family associated with various cellul
      0.069   12.8   0.0         12    5.5   0.0    2.1  2  Thymidylate_kin  Thymidylate kinase
      0.072   12.9   0.1       0.45   10.3   0.0    2.0  2  dNK              Deoxynucleoside kinase
      0.089   12.1   0.0       0.13   11.5   0.0    1.3  1  Zeta_toxin       Zeta toxin
      0.097   12.2   0.0       0.51    9.9   0.1    2.1  2  AAA_25           AAA domain
       0.11   12.4   0.0       0.44   10.5   0.0    1.8  1  ResIII           Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   8.8e-15   9.2e-12       1     156 [.      17     170 ..      17     172 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 8.8e-15
                 TTSSHHHHHHHHHHHHTSEEEEHHHHH..HHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCS.....SEEEEE-TTGGGSHHHHHHHHHHSE...EE CS
         SKI   1 mGaGKstvGkllAkklglefiDlDeli..ekrtgksiaeifeeegeegFrelEsevlkelleee.....glViatGGGavlseenrellkekgi...vi 89 
                 +G+GKs v+ ++A++l+  f+D D l+  ++ t++   e ++    + +r  + ++l++ +         + i +   ++l++ +r++l+++++   +i
  CTQ30385.1  17 SGSGKSAVASEVAHQLHAAFLDGDFLHprSNITKMASGEPLN----DDDRTPWLQALNDAAFAMqrtnkVSLIVC---SALKKSYRDILRKGNPnlsFI 108
                 59*************************777888999999998....77999999999986533324433333555...9***********54434459* PP

                 EEE--HHHHHHHHHHTTSSGGGCSCHHHHHHHHHHHHHHHHHCCSSCEEEECTSSHHHHHHHHHHHH CS
         SKI  90 yLdvsleellerlkadkeRPllqekskeeelleelaereplyeeaadvvvdeseeskeevaeeilea 156
                 yL+ +++++ +rlka+k   ++++++    +++++  +ep  +e++  +vd ++   e v+++ +e+
  CTQ30385.1 109 YLKGDFDVIESRLKARKG-HFFKTQML---VTQFETLQEPGADESDVLIVDIDQPL-EGVVASTIEV 170
                 *****************9.46666666...444444558*****999999999998.6777666665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   4.4e-10   4.6e-07       2     122 ..      11     128 ..      10     143 .. 0.86

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 4.4e-10
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytr.vldrlyqilnelarkalsagrnvildatnlsrrerarflklarrlgvpv 99 
                  +l G++GsGKs +a +++ +l+a +l+ d l+ r   t+  s + +++  ++ + q ln+ a  +++ ++  ++    l+++ r+ ++k  +    + 
  CTQ30385.1  11 YVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRSNITKMASGEPLNDdDRTPWLQALNDAAFAMQRTNKVSLIVCSALKKSYRDILRKGNP----NL 105
                 6899******************************99999999998877755677999999999999988888999999999999988888888....56 PP

      AAA_33 100 rivvvetdeetlkeRlakRaang 122
                 + ++++ d +++++Rl++R+ + 
  CTQ30385.1 106 SFIYLKGDFDVIESRLKARKGHF 128
                 799****************9874 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   5.4e-09   5.7e-06       5     117 ..      11     120 ..       7     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 5.4e-09
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT-EEEEE----SHHHHHHHHHHHHCHTEEE CS
  APS_kinase   5 vwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfseedRkenirrvaevaklladaglivlvafisPyreeReaarelleealkfi 103
                   l G+sgsGKs++a +++++L++       L   +  +++ ++ + +++dR+  ++ +   a  +++++ ++l+   +  ++ R+  r+   +   + 
  CTQ30385.1  11 YVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRSNITKMASGEPLNDDDRTPWLQALNDAAFAMQRTNKVSLIVCSALKKSYRDILRKGNPN---LS 106
                 5689***************999876655555555555567888999***************************999888888999999998885...55 PP

                 EEEEE--HHHHHHH CS
  APS_kinase 104 evfvdtplevceer 117
                  ++++ +++v e+r
  CTQ30385.1 107 FIYLKGDFDVIESR 120
                 57888888777776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   6.1e-08   6.5e-05       3     116 ..      13     127 ..      12     143 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 6.1e-08
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe.aldeskrldedkldklldaleenss..aleegknlvidghlaeleseaakdikk.. 96 
                 l+G++G+GK+ +a e++  l         + +++ l ++ +  +  + + l++d +  +l+al+ ++    +++  +l++ + l + + + +++++   
  CTQ30385.1  13 LMGVSGSGKSAVASEVAHQL------HAAFLDGDFLHPRSNItKMASGEPLNDDDRTPWLQALNDAAFamQRTNKVSLIVCSALKKSYRDILRKGNPnl 105
                 89**************8885......7777777888888888899999*****************87677677777778877777777777776666** PP

      AAA_18  97 ..vvLtaspeelleRlekRgye 116
                   ++L+ + ++   Rl++R+ +
  CTQ30385.1 106 sfIYLKGDFDVIESRLKARKGH 127
                 *******************865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     5e-07   0.00052      25      66 ..       9      47 ..       2      83 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5e-07
      AAA_16 25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesa 66
                ++ +l G sG+GKs+++ e++++l ++   fl g++ + +s+
  CTQ30385.1  9 HVYVLMGVSGSGKSAVASEVAHQLHAA---FLDGDFLHPRSN 47
                6789********************988...888888777555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.3e-06    0.0013       5      43 ..       8      48 ..       4     155 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.3e-06
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeakaee..erpevv 43
                + + v++G sG+GK+ ++ ++++ql+++    +  ++++ +
  CTQ30385.1  8 HHVYVLMGVSGSGKSAVASEVAHQLHAAFLDGDflHPRSNI 48
                56789********************8654444376444433 PP

>> Ploopntkinase1  P-loop Nucleotide Kinase1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0097        10      18      43 ..       9      34 ..       2      40 .. 0.82
   2 !    9.1   0.0   0.00079      0.83     105     166 ..      82     142 ..      45     153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0097
  Ploopntkinase1 18 elyyvkgsngsgkstvpsylaekdpe 43
                    ++y + g  gsgks+v s +a +   
      CTQ30385.1  9 HVYVLMGVSGSGKSAVASEVAHQLHA 34
                    688899************99987555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00079
  Ploopntkinase1 105 fegiipatllstwieklnrparrlvvlfldtpletclsrvdsrnggedfnedlvvekfkrve 166
                        i+ ++l +++ + l + + +l  ++l  + ++  sr+++r g + f+++++v +f+ ++
      CTQ30385.1  82 VSLIVCSALKKSYRDILRKGNPNLSFIYLKGDFDVIESRLKARKG-HFFKTQMLVTQFETLQ 142
                     56689999999********************************96.6799999999998776 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.7e-06    0.0081       5      33 ..      15      43 ..      12      92 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.7e-06
                    -STTSSHHHHHHHHHHHHT-EEEEHHHHH CS
  Cytidylate_kin  5 GPagsGKssvaralaeklglkyldtgalY 33
                    G +gsGKs+va ++a++l +++ld   l 
      CTQ30385.1 15 GVSGSGKSAVASEVAHQLHAAFLDGDFLH 43
                    889********************987766 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   3.7e-05     0.039       8      68 ..      17      77 ..      13     153 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.7e-05
  Cytidylate_kin2  8 yGsgGetigeaLAekLglpfydreiieevakelglseeeveevdersrlssflskllaarv 68
                      Gsg+++++ ++A++L+  f+d + ++  +  +++   e  + d+r +  ++l+ ++ a  
       CTQ30385.1 17 SGSGKSAVASEVAHQLHAAFLDGDFLHPRSNITKMASGEPLNDDDRTPWLQALNDAAFAMQ 77
                     6**********************99998888888887777777776665555555544433 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.9e-05     0.084       1      69 [.      14      77 ..      14     131 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.9e-05
                EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHH..HHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHH CS
      AAA_17  1 lGgPGsGKgtqceklvekygfthlsaGdllr..eeakrgglakardemrklpleekkelqkeaaekiaeea 69
                +G+ GsGK+ ++++++++++  +l  Gd l   +++++          + l+ +++  +++ + ++   ++
  CTQ30385.1 14 MGVSGSGKSAVASEVAHQLHAAFLD-GDFLHprSNITKM------ASGEPLNDDDRTPWLQALNDAAFAMQ 77
                59*********************99.9999511222222......22333444444445555555544444 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.5e-05     0.037       2      26 ..       9      41 ..       8     155 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.5e-05
     DUF2075  2 avvlVtGvaGtGKtvvllnllael........e 26
                +v++  Gv+G+GK+ v+++++++l         
  CTQ30385.1  9 HVYVLMGVSGSGKSAVASEVAHQLhaafldgdF 41
                79999*****************99555554440 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.6e-05     0.049       2      28 ..      12      38 ..      11     154 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.6e-05
                EEESSTTSSHHHHHHHHHHHHTHEEEE CS
         AAA  2 llyGppGtGKTllakavakelgvefle 28
                +l+G  G GK+++a+ va++l++ fl 
  CTQ30385.1 12 VLMGVSGSGKSAVASEVAHQLHAAFLD 38
                699******************988875 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.015        15       3      26 ..      15      38 ..      13      53 .. 0.80
   2 ?    5.5   0.0     0.011        12     121     183 ..     107     165 ..      86     167 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.015
                     ESTTSSHHHHHHHHHHHHHHTTE. CS
  Thymidylate_kin  3 GlDGaGKttqaellkerlkeegik 26
                     G+ G+GK+ +a  ++  l+++ + 
       CTQ30385.1 15 GVSGSGKSAVASEVAHQLHAAFLD 38
                     999***************998876 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.011
                      EEEEESSHHHHHTSCCTTSSTTTSHHHHHHHHHHHHHHHHHHHHTTSTEEEEETTS-HHHHHH CS
  Thymidylate_kin 121 tflldvdpevalkRlakrdeldeeeeeqldflrkvrerylelakederiliidasksieevhe 183
                      +++l+ d +v   Rl++r+      ++ +   +++++ ++e  +++  +li+d+ +++e v++
       CTQ30385.1 107 FIYLKGDFDVIESRLKARKG---HFFKTQMLVTQFET-LQEPGADESDVLIVDIDQPLEGVVA 165
                      7899**************99...44555555666666.777777999**********998875 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.5   5.3e+02       3      23 ..      13      33 ..      11      39 .. 0.80
   2 ?   10.3   0.0   0.00043      0.45      96     158 ..      77     140 ..      61     173 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.5
                EEESTTSSHHHHHHHHHCCST CS
         dNK  3 veGnIgaGKstlvklLskklg 23
                + G  g+GKs +++  +++l 
  CTQ30385.1 13 LMGVSGSGKSAVASEVAHQLH 33
                56888*******998888775 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00043
                 HHTTSS-HHHHHHHHHHHHHHHHHCCH-SEEEEEE--HHHHHHHHHHCTTCCCT.TS-HHHHHH CS
         dNK  96 aekgtlseeelkiykelldnlleelakpdlliYLkasletclerikkRgreeek.kieldYlek 158
                  + +++s      +k+ +  +l++ +    +iYLk + ++++ r+k R+ ++ k ++    +e+
  CTQ30385.1  77 QRTNKVSLIVCSALKKSYRDILRKGNPNLSFIYLKGDFDVIESRLKARKGHFFKtQMLVTQFET 140
                 5555666666666667777777665534459***************987554332554444444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.13      17      52 ..       9      40 ..       2      94 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
  Zeta_toxin 17 klillgGqpGAGKselaellkdelerqgnvvrldpD 52
                 +++l G +G+GKs++a++++ +l     +  ld+D
  CTQ30385.1  9 HVYVLMGVSGSGKSAVASEVAHQL----HAAFLDGD 40
                57888899************9998....45556666 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00049      0.51      33      58 ..       8      33 ..       5     125 .. 0.79
   2 ?    0.1   0.0      0.47     5e+02      53      98 ..      84     146 ..      79     167 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00049
      AAA_25 33 gelallaGapgtGKttlaldlalava 58
                +++ +l+G +g+GK+++a+++a+ + 
  CTQ30385.1  8 HHVYVLMGVSGSGKSAVASEVAHQLH 33
                67899***************998764 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.47
      AAA_25  53 lalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal.................r 98 
                 l ++ a+ k+  ++++  + +  ++ + ++ d ++ Rl+a   ++                 +
  CTQ30385.1  84 LIVCSALKKSYRDILRKGNPNLSFIYLKGDFDVIESRLKARKGHFfktqmlvtqfetlqepgA 146
                 556666666666655556666666666678888899998877777444444444444444443 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00042      0.44      23     139 ..       7     155 ..       2     155 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
                 TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHG...............................GGGTGG....GEEE.. CS
      ResIII  23 rdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleef...............................kkflseaykeigkk.. 88 
                 +++ +++    G+GK+ va +++ +l+ ++      fl pr ++++ +  e                                + +++        +  
  CTQ30385.1   7 DHHVYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFLHPRSNITKMASGEPlndddrtpwlqalndaafamqrtnkvslivcSALKK--------Syr 95 
                 33445577789****************9866..4557889999999888555555666666666666555555555444444311111........022 PP

                 ..............ESSS-B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEE CS
      ResIII  89 ..............vsgdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiD 139
                               ++gd + + e++ + +k +++++q+l  +     e+ +e + d++dv+i+D
  CTQ30385.1  96 dilrkgnpnlsfiyLKGDFDVI-ESRLKARKGHFFKTQMLVTQF----ETLQEPGADESDVLIVD 155
                 2222223333444467777777.888889999999999999999....78888899999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1298.69
//
Query:       CTQ30386.1  [L=331]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-30  106.4   0.0    2.3e-30  106.0   0.0    1.0  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    1.5e-23   83.9   0.0    2.7e-23   83.1   0.0    1.4  1  Peripla_BP_3  Periplasmic binding protein-like domain
    5.8e-18   64.4   0.0    1.3e-17   63.3   0.0    1.6  1  LacI          Bacterial regulatory proteins, lacI family
    1.2e-12   48.0   0.0    1.5e-12   47.6   0.0    1.2  1  Peripla_BP_4  Periplasmic binding protein domain
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.069   13.0   0.0    2.1  2  HTH_10        HTH DNA binding domain
      0.019   15.0   0.1      0.076   13.1   0.0    2.0  2  HTH_3         Helix-turn-helix
      0.042   13.6   0.0       0.14   12.0   0.0    1.9  2  HTH_23        Homeodomain-like domain
      0.058   13.7   0.0       0.14   12.5   0.0    1.6  1  HTH_31        Helix-turn-helix domain
      0.071   12.8   0.0       0.17   11.6   0.0    1.7  1  Crp           Bacterial regulatory proteins, crp family


Domain annotation for each model (and alignments):
>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.0   1.1e-33   2.3e-30       2     259 ..      64     309 ..      63     319 .. 0.93

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 1.1e-33
                   EEEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHH.T-EEEEESS--B-TTTS- CS
  Peripla_BP_1   2 lklglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaes.gipvialedaidapdgvP 96 
                    ++g++lp+l++  f +++ gi+    ++g++++l + g++++++ k++++++++ idgli++ ++   ++ +++ e  gipv++l d    p  ++
    CTQ30386.1  64 RAIGVLLPSLTNQVFSEVLRGIESVTDAFGYQTMLAHYGYKPEMEeKRLESMLSWNIDGLILTERTHT-PRTLKMIEVaGIPVVELMDS-RSP-CLD 157
                   589************************************************************99888.9999999999*********9.777.677 PP

                   EEE.E-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-SEEE-SSHHHH CS
  Peripla_BP_1  97 cvi.pddtqageestqkLiaeghkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndiedaaealnelleshPeidaivaindeaa 192
                    ++ +d+++a+ + t   ia+gh+  +a l++   + t ++   G+++a+ +aG+      + + s+++  + e++ +  ++ P++d i + nd  a
    CTQ30386.1 158 IAVgFDNFEAARQMTAAIIARGHRH-VAYLGARLDERTIIKQK-GYEQAMLDAGM-TPYSVMVEQSSSYSSGIELMRQARREYPQLDGIFCTNDDLA 251
                   65439********************.*************9998.***********.7888999***************99999************** PP

                   HHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH CS
  Peripla_BP_1 193 lGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqki 259
                   +Ga++  +  G lki+++      +  ++ g      + + ++ la+  +pre +Gr  ++++l  i
    CTQ30386.1 252 VGAAFECQRLG-LKIPDDM-----AIAGFHGH---DIGQVMEPRLASVLTPRERMGRIGAERLLARI 309
                   ***********.*******.....88888887...8899**********************999988 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   1.3e-26   2.7e-23       4     165 ..     175     330 ..     172     331 .] 0.89

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 1.3e-26
                   HHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC.-SE..EEEESSCCHHHHHHHHHCCTT CS
  Peripla_BP_3   4 LvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaa.lPt..AviaasDelAlgvlqalreag 97 
                    +++Ghr++a++g   +r ++     ++g++qa+ ++g+++  ++v +  ++  ++++ +      ++++ +P+  ++++++D lA+g+   +++ g
    CTQ30386.1 175 IIARGHRHVAYLG---ARLDERTIIKQKGYEQAMLDAGMTPYSVMVEQS-SSYSSGIELMR-----QARReYPQldGIFCTNDDLAVGAAFECQRLG 262
                   689**********...777888888999************999988555.55777777777.....3334688555********************* PP

                   --TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GG CS
  Peripla_BP_3  98 lrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReS 165
                   l++P+d ++ gf + ++ +++ P l +v +p e++Gr  ae ll++++ge  +p+   l  +l +++S
    CTQ30386.1 263 LKIPDDMAIAGFHGHDIGQVMEPRLASVLTPRERMGRIGAERLLARIRGEAITPKMLDLGFTLSPGGS 330
                   ************************************************99999999889889999988 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   6.3e-21   1.3e-17       2      46 .]       8      52 ..       7      52 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 6.3e-21
                HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  2 ikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ++DVA+l GV+k+TVSr+L+n+e+Vse++r +++ a++el+YiPn
  CTQ30386.1  8 LQDVADLVGVTKMTVSRYLRNPEQVSEALRGKIAVALDELGYIPN 52
                89******************************************9 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   7.7e-16   1.5e-12       1     218 [.      66     276 ..      66     313 .. 0.88

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 7.7e-16
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEE.ESTTGCTTT-C CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVva.fdsddapsger 96 
                   igv++++ +n+ fs++  g+e+  ++ g+++ + +  + + + + + +e++++ + dg+i++  + t    +lk ++ aGIpVv  +ds    s   
    CTQ30386.1  66 IGVLLPSLTNQVFSEVLRGIESVTDAFGYQTML-AHYGYKPEMEEKRLESMLSWNIDGLILT--ERTHTPRTLKMIEVAGIPVVElMDSR---SPCL 156
                   89***************************9999.7999999*******************99..77788899**********99747777...8889 PP

                   EEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHHTTT.ECEEEESSC CS
  Peripla_BP_4  97 layvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlkeypgikivaevaganwdaekaqqalealltanp.ldgilaand 192
                   +  vgfdn++a++++  ++      +   v++l G+  d  +    +g ++++ +  g++  ++ ++   +++ + + + +  +++p ldgi+++nd
    CTQ30386.1 157 DIAVGFDNFEAARQMTAAIIARGHRH---VAYL-GARLDERTIIKQKGYEQAMLD-AGMTPYSVMVEQSSSYSSGIELMRQARREYPqLDGIFCTND 248
                   99*******************99955...8888.888888888899999998666.48888876666579**************9966********* PP

                   CHHHCHHHHHHHTTT..TSTEEEEEES- CS
  Peripla_BP_4 193 gmaegalealeaagl..agkvvvtgqDa 218
                   + a ga+   +  gl   ++++++g+ +
    CTQ30386.1 249 DLAVGAAFECQRLGLkiPDDMAIAGFHG 276
                   *******999999997766666777654 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.5e-05     0.069      22      48 ..       4      30 ..       2      32 .. 0.88
   2 ?   -3.5   0.0       4.9   9.8e+03      18      30 ..     165     177 ..     165     178 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.5e-05
      HTH_10 22 RrvtlkeLAkelGIskstlsehLrkae 48
                +r  l+++A+  G++k+t+s +Lr+ e
  CTQ30386.1  4 KRPVLQDVADLVGVTKMTVSRYLRNPE 30
                566699******************966 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.9
      HTH_10  18 FdyPRrvtlkeLA 30 
                 F+  R++t++ +A
  CTQ30386.1 165 FEAARQMTAAIIA 177
                 6666776666555 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.8e-05     0.076      13      43 ..       9      39 ..       6      47 .. 0.79
   2 ?   -3.0   0.0       4.2   8.3e+03       4      16 ..     195     207 ..     193     209 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.8e-05
                HHHHHHHTSSHHHHHHHHTTSSCSBHHHHHH CS
       HTH_3 13 eeLAeklGvsrstisriEnGernPsletlkk 43
                +++A+++Gv++ t+sr+ ++  + s     k
  CTQ30386.1  9 QDVADLVGVTKMTVSRYLRNPEQVSEALRGK 39
                69*****************965566655555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.2
                 HHHHTTHHHHHHH CS
       HTH_3   4 lRkqlglsqeeLA 16 
                 + kq+g+ q++L 
  CTQ30386.1 195 IIKQKGYEQAMLD 207
                 6689999999885 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.1e-05      0.14      21      40 ..       9      28 ..       8      38 .. 0.90
   2 ?   -2.2   0.0         2   4.1e+03       3      18 ..      33      49 ..      31      51 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.1e-05
      HTH_23 21 reIAreLgvsrrTvyrwlkr 40
                +++A++ gv+++Tv+r+l+ 
  CTQ30386.1  9 QDVADLVGVTKMTVSRYLRN 28
                689**************996 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2
      HTH_23  3 sereRlrillllae.Gl 18
                se  R +i+ +l+e G+
  CTQ30386.1 33 SEALRGKIAVALDElGY 49
                68889999999999776 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.2e-05      0.14      18      55 ..       9      45 ..       8      47 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.2e-05
      HTH_31 18 eevAerlgvsestlsrlEqGrrgrpspavlealaralg 55
                ++vA+++gv++ t+sr+ +  ++ +s+a   ++a al+
  CTQ30386.1  9 QDVADLVGVTKMTVSRYLRNPEQ-VSEALRGKIAVALD 45
                79********************6.***99999998886 PP

>> Crp  Bacterial regulatory proteins, crp family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.3e-05      0.17       6      23 ..       9      26 ..       8      28 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.3e-05
                HHHHHHHTS-HHHHHHHH CS
         Crp  6 qdIAdylGlTrETVSRlL 23
                qd Ad++G T  TVSR L
  CTQ30386.1  9 QDVADLVGVTKMTVSRYL 26
                9***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2625.71
//
Query:       CTQ30387.1  [L=231]
Description: hypothetical protein CH1034_350083 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-37  126.2   0.2    7.4e-37  125.6   0.2    1.3  1  Pirin         Pirin
    8.1e-29   99.6   0.7    2.5e-28   98.1   0.3    1.9  2  Pirin_C_2     Quercetinase C-terminal cupin domain
    1.2e-07   31.4   0.2    5.9e-07   29.1   0.1    2.1  2  Cupin_2       Cupin domain
     0.0013   19.0   0.0       0.66   10.4   0.0    2.2  2  Pirin_C       Pirin C-terminal cupin domain
  ------ inclusion threshold ------
       0.12   12.9   0.0       0.53   10.8   0.0    2.1  2  2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily


Domain annotation for each model (and alignments):
>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.2   2.1e-40   7.4e-37       5     108 .]       7     119 ..       3     119 .. 0.94

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 2.1e-40
                 CCGTCC...TTCCEECTCEECCEEESS.S.ETT.....EEEE..T-EEEEEEEBSEEEEEEEECSEEEEEETTS-EEEEETT-EEEEE-TT-EEEEEEE CS
       Pirin   5 rralgk..aaelqsvdpFlfldefdpaelevge.....edvi..gagfpphphrgletvtylleGevehrDslGnkgvirpGdvqwmtAgsGivhsEmn 94 
                 ++++g+  + +l+s+++F+f++++dp+ + +++     +dvi  g+gf++hph+++e++ty+leG+veh+Ds+Gnk+++ +G++q+m+Ag+G+ hsE+n
  CTQ30387.1   7 ANERGHanHGWLDSWHTFSFANYYDPNFMGFSAlrvinDDVIdaGQGFGTHPHKDMEILTYVLEGAVEHQDSMGNKEQVPAGEFQIMSAGTGVRHSEYN 105
                 4555556689**********************9****88899999****************************************************** PP

                 -SSSS-EEEEEEEE CS
       Pirin  95 eeeeesleglqlWv 108
                 ++++ +l+++q+W+
  CTQ30387.1 106 PSKTDRLRLYQIWI 119
                 *************8 PP

>> Pirin_C_2  Quercetinase C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.45   1.6e+03      43      55 ..      66      78 ..      44     106 .. 0.64
   2 !   98.1   0.3   7.1e-32   2.5e-28       1      86 []     143     228 ..     143     228 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.45
   Pirin_C_2 43 lqvieGevevnge 55
                  v+eG+ve +++
  CTQ30387.1 66 TYVLEGAVEHQDS 78
                4577888888773 PP

  == domain 2  score: 98.1 bits;  conditional E-value: 7.1e-32
   Pirin_C_2   1 lvaSpdgrdgslkinQdarlyaakldegesleyelaagrkaYlqvieGevevngeslaagDGlaiedesslsltaeedaevLlfDl 86 
                 lv+Spd+rdgslk+ Qd++ly+  l ++e+  +++aa+r++++qv++Gev++ng++ ++ DGlai+de+++s++a++d+e+LlfDl
  CTQ30387.1 143 LVLSPDARDGSLKVYQDMELYRWALLKDEQSVHQIAAERRVWIQVVKGEVTINGTKATTSDGLAIWDEQAISVHADSDSEILLFDL 228
                 89***********************************************************************************8 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   1.6e-10   5.9e-07       5      68 ..      48     115 ..      46     120 .. 0.89
   2 ?   -0.8   0.0      0.36   1.3e+03      23      33 ..     185     195 ..     175     208 .. 0.68

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.6e-10
                 EETTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT..-EEEEEE-SSS.-EEEE CS
     Cupin_2   5 lppGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpag..tpHrfrNtgde.parll 68 
                 ++ G+ ++ h H++ + + yVleG +e +   g++ ++ aG++ +  ag  ++H   N++++  +rl+
  CTQ30387.1  48 IDAGQGFGTHPHKDMEILTYVLEGAVEHQdSMGNKEQVPAGEFQIMSAGtgVRHSEYNPSKTdRLRLY 115
                 778999***********************888****************87899******999888884 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.36
                 EEEEESEEEEE CS
     Cupin_2  23 fyVleGegelt 33 
                 + V++Ge+++ 
  CTQ30387.1 185 IQVVKGEVTIN 195
                 55777776653 PP

>> Pirin_C  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0028       9.9       9      55 ..      51     100 ..      45     112 .. 0.77
   2 !   10.4   0.0   0.00018      0.66       6      68 ..     167     226 ..     162     229 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0028
                 T-EEEEE--TT-EEEEEEEES-EEESSTT...EEE-TTEEEEE-SSSEEE CS
     Pirin_C   9 gaelelplpegleaavyvleGelevgger...seieeeqlavlgdgdslv 55 
                 g+ +     +++e + yvleG +e +++    ++++++++ ++++g+ + 
  CTQ30387.1  51 GQGFGTHPHKDMEILTYVLEGAVEHQDSMgnkEQVPAGEFQIMSAGTGVR 100
                 5555555588999**********877766666799999999999887765 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00018
                 E-TT-EEEEE--TT-EEEEEEEES-EEESSTTEEE-TTEEEEE-SSSEEEEE--SS-EEEEEE CS
     Pirin_C   6 leagaelelplpegleaavyvleGelevggerseieeeqlavlgdgdslvvkaeekgarvlLl 68 
                 l ++++  ++++ + ++ + v++Ge++++g++ + + + la+  d++ + v+a+ +++++lL+
  CTQ30387.1 167 LLKDEQSVHQIAAERRVWIQVVKGEVTINGTK-ATTSDGLAIW-DEQAISVHAD-SDSEILLF 226
                 555566666779999****************7.6666666666.5667777777.66777775 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00015      0.53       4      40 ..      24      74 ..      21     115 .. 0.67
   2 ?   -1.3   0.0      0.88   3.2e+03      56      84 ..     150     178 ..     124     191 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
                  EEEEEEE-S-..............--------EEEEEESSSEEEEEEE-TT CS
  2OG-FeII_Oxy  4 llvlnyypph..............pdpevilglgahtdaslltillqddvg 40
                    ++nyy+p               +d  + +g+++h+d ++lt+ l   v+
    CTQ30387.1 24 FSFANYYDPNfmgfsalrvinddvIDAGQGFGTHPHKDMEILTYVLEGAVE 74
                  56789999998888888885544455555899************9987743 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.88
                   -TTEEEEEE-HHHHHHTTS-S----EEE- CS
  2OG-FeII_Oxy  56 vdnslivniGdallflsngryksvlHrVl 84 
                    d+sl+v     l+ +   +++ + H + 
    CTQ30387.1 150 RDGSLKVYQDMELYRWALLKDEQSVHQIA 178
                   44555555555566777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1950.50
//
Query:       CTQ30388.1  [L=345]
Description: putative oxidoreductase with NAD(P)-binding Rossmann-fold domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-28   99.2   0.0    3.8e-28   98.7   0.0    1.2  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    4.8e-14   52.4   0.0      1e-13   51.3   0.0    1.6  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 
    2.6e-05   24.8   0.1    4.7e-05   24.0   0.1    1.3  1  NAD_binding_3   Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   6.4e-32   3.8e-28       1     117 [.       3     120 ..       3     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.7 bits;  conditional E-value: 6.4e-32
                   EEEEEETTSHH.HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHEEESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEESSS- CS
  GFO_IDH_MocA   1 lrvaiiGaGki.gskhlrplnesqrleevvalldpdaeraeavaesfgveaysdleelladpeidavivatpngtheelakaaleagkhvllEKPla 96 
                   l++a+iG+Gk  ++ hl+ + +++++++v++++ ++a+  e++ +  ++++ sdlee+l+dp +++v+v+t++++h+e+ak+aleagk+vl+EKP++
    CTQ30388.1   3 LHCAFIGFGKStTRYHLPYVLHRKDRWQVAHIYRRRAKPEEQAPQYSHIHFTSDLEEVLNDPLVKLVVVCTHADSHFEYAKKALEAGKNVLVEKPFT 99 
                   689********8888999999**************************************************************************** PP

                   SSHHHHHHHHHHHHHHTS-EE CS
  GFO_IDH_MocA  97 ttveeakelvelaekkgklvs 117
                    t+eeak l +la++kg +v+
    CTQ30388.1 100 PTLEEAKTLFALANSKGLTVT 120
                   *****************9986 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   1.7e-17     1e-13       1     115 [.     135     238 ..     135     239 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 1.7e-17
                     HHHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSHHCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEEEEEEEEEETT CS
  GFO_IDH_MocA_C   1 KelIengklGevvsvdvwtldtragaeakkrwkrrkkksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaavmsvlnlekgs 95 
                     K+ Ie+gklGe v ++++++++r+ ae+ +++      + G ++ lg+H++D+ + LfG p +v+++l   r+++++a+ +d++    ++l++g 
      CTQ30388.1 135 KKVIESGKLGELVEIESHFDNYRPLAETNPGGP-----QNGEFYGLGVHTLDQIISLFGRPDHVSYDL---RSLRNKANPDDTF---EAQLFYGD 218
                     899******************************.....679***************************...5777777888888...689***** PP

                     EEEEEEEECCTSSSEEEEEE CS
  GFO_IDH_MocA_C  96 gevitlesgvskglsiryvi 115
                     +++i+ +s+     + ++++
      CTQ30388.1 219 MKAIVKTSHLVQIDYPKFIV 238
                     ****9999998888888876 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   7.9e-09   4.7e-05      22     113 ..      29     118 ..      21     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 7.9e-09
                    EEEEEEEESSEEE-TTHHHHHT--CB---HHHHHHHHS-EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGGG-HHHHHHHTSSSTTS--. CS
  NAD_binding_3  22 lelvavadrdsllskdrkallasealtldlddliahldpdvvVEcasseavaelvlkaLkagkdvvtankgaladealyeeLreaaeangak 113
                     +++ +++r+ ++ ++ + +      t+dl+++++++ +++vV c++ ++  e++ kaL+agk+v++      + ++  ++L+++a+++g +
     CTQ30388.1  29 WQVAHIYRRR-AKPEEQAPQYSHIHFTSDLEEVLNDPLVKLVVVCTHADSHFEYAKKALEAGKNVLVEKPFTPT-LEEAKTLFALANSKGLT 118
                    5889999999.66666777889999*****************************************96554444.88888999999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2837.45
//
Query:       CTQ30389.1  [L=217]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-21   73.9   6.1    1.3e-20   73.5   6.1    1.2  1  Bactofilin  Polymer-forming cytoskeletal
  ------ inclusion threshold ------
       0.12   12.4   2.7       0.12   12.4   0.9    1.9  2  MinC_C      Septum formation inhibitor MinC, C-terminal domai


Domain annotation for each model (and alignments):
>> Bactofilin  Polymer-forming cytoskeletal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   6.1   1.5e-24   1.3e-20       1      96 [.      88     183 ..      88     185 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 1.5e-24
  Bactofilin   1 tligegtkikGelevegdlridGkveGdiea.kgklvvgeggkvegnikaeevvvaGtvkGnveaeekvelkktakveGdikaksleieegavfeGk 96 
                 t+i++g+++ G++  +g++ i+G+v+G+iea ++ ++v ++g+vegn++++e++++G+v+G+++ + ++++++++++eG++ ++ l+i++g+vf+G+
  CTQ30389.1  88 TVIASGVHFVGNIVASGHVYIHGQVTGNIEAkEHLIKVMREGQVEGNVSCRELIIDGKVQGQCHGD-SITIEEHGHLEGTLAYRALAIKKGGVFSGR 183
                 79***************************76366788****************************9.*****************************8 PP

>> MinC_C  Septum formation inhibitor MinC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.9   1.3e-05      0.12      16      48 ..      86     118 ..      78     121 .. 0.87
   2 ?   -2.1   0.0      0.42   3.8e+03      17      44 ..     139     148 ..     123     167 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.3e-05
                 SEEEESC-B-TT-EEEESS-EEEEEEE-SEEEE CS
      MinC_C  16 gdlvvlgdVnpGAeviAdgniivlGalrGrahA 48 
                 +  v+ + V+  ++++A+g++++ G++ G++ A
  CTQ30389.1  86 ETTVIASGVHFVGNIVASGHVYIHGQVTGNIEA 118
                 56789999*********************9876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.42
                 EEEESC-B-TT-EEEESS-EEEEEEE-S CS
      MinC_C  17 dlvvlgdVnpGAeviAdgniivlGalrG 44 
                 +l++                   G+++G
  CTQ30389.1 139 ELIID------------------GKVQG 148
                 33333..................34443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1783.63
//
Query:       CTQ30390.1  [L=162]
Description: putative acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-16   59.4   0.0    4.4e-16   59.2   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.3e-11   44.9   0.0    1.5e-11   44.7   0.0    1.0  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
    4.9e-11   42.7   0.0      6e-11   42.4   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.2e-10   42.2   0.0    1.4e-10   42.0   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
    1.1e-07   31.7   0.2    1.6e-07   31.1   0.2    1.3  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
    2.8e-07   30.9   0.0    3.7e-07   30.5   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00029   20.9   0.0     0.0031   17.6   0.0    2.2  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
     0.0009   19.2   0.0     0.0015   18.4   0.0    1.4  1  FR47             FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0     2e-19   4.4e-16      16     117 .]      33     136 ..      14     136 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 2e-19
                     HHHHHHHHHHHHHHSTTC.EEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHH CS
  Acetyltransf_1  16 nedaseeefeesfsleae.gllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaa 108
                      +++se++++e++ ++++   lva+ d++++G++s+  ++ +++ +++  ++ V++ ++++G+ saL++++++ + ++  +++i+l+v++dn +a
      CTQ30390.1  33 VPHPSEHMWRERLTDTPGvKQLVACIDEQVVGHLSIAVVQRPRRSHVADFGVSVDSRWHNRGVTSALMRTMIDMCDNWlRVERIELTVFADNAPA 127
                     3455666677888899999**********************999999999********************************************* PP

                     HHHHHHTTE CS
  Acetyltransf_1 109 irlYeklGF 117
                     i++Y+k GF
      CTQ30390.1 128 IAVYKKYGF 136
                     ****88**9 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   6.7e-15   1.5e-11       1     153 [.       6     155 ..       6     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 6.7e-15
  Acetyltransf_4   1 iraateeDakeilaiyaeyvvntaitfeyevssveefekflealdsekeyvflvaesdrivGyaylgqfkkr.akdwkaelsvylaerdnnkegl 94 
                     ir a+++D+++i++i a+++v +  t +  ++s  +   +l ++  ++   + +  ++++vG + ++ ++ r  +++ a   v ++     ++g+
      CTQ30390.1   6 IRHAEPKDIDAIRQIHAQPEV-YHNTLQVPHPSEHMWRERLTDT--PGVKQLVACIDEQVVGHLSIAVVQ-RpRRSHVADFGVSVD-SRWHNRGV 95 
                     89**************98777.777777889************8..665555555589*********555.549999999999997.66888888 PP

  Acetyltransf_4  95 grelidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiDm 153
                      ++l+  ++++      +e+++  ++++n+++i+++k+ GFe++g  ++++  ng++ D 
      CTQ30390.1  96 TSALMRTMIDMCdNWLRVERIELTVFADNAPAIAVYKKYGFEIEGTGRRYALRNGEYVDA 155
                     88888888877778889****************************************995 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.7e-14     6e-11      19     109 ..      38     139 ..      15     153 .. 0.84

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2.7e-14
  Acetyltransf_10  19 pealreri.eegealllvaeeggkivGviel.rdgs....hisll..fVdpeyrgqGigkaLleaveeeaekdgikl..eltvnasp.yavpfY 101
                      ++ +rer+ +++ ++ lva  ++++vG++++   ++    h++ +   Vd+ ++ +G+ +aL+ ++++ ++++   +  eltv a++  a+++Y
       CTQ30390.1  38 EHMWRERLtDTPGVKQLVACIDEQVVGHLSIaVVQRprrsHVADFgvSVDSRWHNRGVTSALMRTMIDMCDNWLRVEriELTVFADNaPAIAVY 131
                      36789999779999999999999*****966333324678999887799***********************9776689*************** PP

  Acetyltransf_10 102 eklGFkav 109
                      +k+GF+  
       CTQ30390.1 132 KKYGFEIE 139
                      *****965 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   6.3e-14   1.4e-10       2     138 .]       4     137 ..       3     137 .. 0.79

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 6.3e-14
  Acetyltransf_3   2 LlLrplteeDlealfelrsdpevmry...lpepltleeaeewlerawaeeseeegyg.waivlkdtgviGsvglrdleeedee..aelgymlaps 90 
                     +++r+++++D++a+ ++ ++pev +    +p+      ++ w er +++     g+  ++ +  d++v+G  ++  +++ +++  a++g  +++ 
      CTQ30390.1   4 IVIRHAEPKDIDAIRQIHAQPEVYHNtlqVPH----PSEHMWRER-LTDT---PGVKqLVAC-IDEQVVGHLSIAVVQRPRRShvADFGVSVDSR 89 
                     689***********99******9964433333....334455553.3332...565524444.45548**998886666555566********** PP

  Acetyltransf_3  91 fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     ++++G+++  +r +++ + + l++er++ ++ ++N   i+v++k Gfe
      CTQ30390.1  90 WHNRGVTSALMRTMIDMCDNWLRVERIELTVFADNAPAIAVYKKYGFE 137
                     99*********************************************7 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.2   7.2e-11   1.6e-07       5     142 ..      13     141 ..      10     144 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 7.2e-11
                     GHHHHHHHCTSCCCHHHH-----HHHHHHHHHHHC.STTEEEEEEEETTEEEEEEEEEEGGGCGGGGCS---TT-EEEEEEESSHHHCTTTCHHH CS
  Acetyltransf_8   5 DlellhrWmnrprvaewweeagtleevrellakldadphsepliglldgepvgyfeiYwakedelaeyydaepgdrGiHlligeaeargkgltta 99 
                     D++ +++ +++p+v +   +      ++ ++++l+++p +++l++++d++ vg + i  +++      ++ +  d+G+ +   + + +++g+t+a
      CTQ30390.1  13 DIDAIRQIHAQPEVYHNTLQVP-HPSEHMWRERLTDTPGVKQLVACIDEQVVGHLSIAVVQRP-----RRSHVADFGVSV---DSRWHNRGVTSA 98 
                     5566666666666665544433.4566778999************************999999.....566666777655...67888******* PP

                     HHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEE CS
  Acetyltransf_8 100 llralvhylfadprtrrvvvEPdvrNerairllekaGfekeke 142
                     l+r++++++ +  r++r+ +   ++N+ ai++++k Gfe e++
      CTQ30390.1  99 LMRTMIDMCDNWLRVERIELTVFADNAPAIAVYKKYGFEIEGT 141
                     ***************************************9876 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.6e-10   3.7e-07       6      75 ..      41     137 ..      36     138 .. 0.66

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.6e-10
                     E.............EEEETTEEEEEEEEEEES......TCTEE...EEE-GGGTTSSHHHHHHHH........TTSEEE...EEEEEE..THHHH CS
  Acetyltransf_7   6 f.............VaeddgkivGfialslld......aeitr...laVdpeyrgkGiGraLlea........aekgii...leqlel..naeka 65 
                     +             Va  d+++vG +++++++              + Vd  ++++G+ +aL++              +   +e l++  ++ +a
      CTQ30390.1  41 WrerltdtpgvkqlVACIDEQVVGHLSIAVVQrprrshV---AdfgVSVDSRWHNRGVTSALMRTmidmcdnwL----RverIE-LTVfaDNAPA 127
                     5555555555555589999*****999999988876433...145699****************6344332220....122223.233434449* PP

                     HHHHHHTTEE CS
  Acetyltransf_7  66 ikfYeklGFe 75 
                     i+ Y+k+GFe
      CTQ30390.1 128 IAVYKKYGFE 137
                     *********8 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.4e-06    0.0031       2     127 ..       6     138 ..       5     138 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.4e-06
                     EEEE-GGGHHHHHHHHH..HHTT----H.....HHHHHHHHHHTTS...EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS CS
  Acetyltransf_9   2 irelteedldevlellk..yaFqdeespl...eeireyfrkllees...rvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgr 88 
                     ir+++++d+d++ ++++  ++++ + +     e     +r++l +    + l+a  ++++vg+l +  ++     ++ ++a   gV+v+    +r
      CTQ30390.1   6 IRHAEPKDIDAIRQIHAqpEVYHNTLQVPhpsE---HMWRERLTDTpgvKQLVACIDEQVVGHLSIAVVQRP---RRSHVA-DFGVSVDSRWHNR 93 
                     799999999999888763368888877765422...344555555435588999999999999876544432...333333.3589********* PP

                     -HHHHHHHHHHHHHHHT.T--EEEE--.....SSHHHHHTTT-EE CS
  Acetyltransf_9  89 gvlskLlaraleemree.gqplsllfP.....ssipiYrrfGyei 127
                     gv s+L++++++ ++ + +++ + l+       +i++Y+++G+ei
      CTQ30390.1  94 GVTSALMRTMIDMCDNWlRVERIELTVfadnaPAIAVYKKYGFEI 138
                     *************9886533333333222333338999****986 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.8e-07    0.0015      26      79 ..      83     138 ..      64     145 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 6.8e-07
                 EEEE-GGG-SSSHHHHHHHHHHHHHHH..S-S-EEEEEETT-HHHHHHHHHHT-EE CS
        FR47  26 alqvlpehrrrGlgsrlvkalakeiae..rgktvllvvvasNtpsirlyeklGfek 79 
                 ++ v+    +rG  s l + ++    +  r + + l v a+N p+i++y+k Gfe 
  CTQ30390.1  83 GVSVDSRWHNRGVTSALMRTMIDMCDNwlRVERIELTVFADNAPAIAVYKKYGFEI 138
                 688999999**************99999999***********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1303.63
//
Query:       CTQ30391.1  [L=581]
Description: gamma-glutamyltranspeptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.3e-192  639.8   0.8   3.7e-192  639.6   0.8    1.0  1  G_glu_transpept  Gamma-glutamyltranspeptidase


Domain annotation for each model (and alignments):
>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  639.6   0.8  2.1e-196  3.7e-192       2     510 ..      65     573 ..      64     575 .. 0.99

  Alignments for each domain:
  == domain 1  score: 639.6 bits;  conditional E-value: 2.1e-196
                      HHHHTT--HHHHHHHHHHHHHHHSTTT-STTSEEEEEEEETTSCEEEEEEE--BB-TT--TTTT...TSCBCCHHHHSSGGG-BB--HHHHHHH CS
  G_glu_transpept   2 evLrkGGnAvDAavAaalclgvvepqssGiGGGgfllvydaktkkvealdaretAPaaatkdmf...dkegdsklsktgalavgVPGevaglee 92 
                      ++Lr+GGnAvDAavA+ ++l+v++pq+ +iGGGgf++++++++k++ a+d+re+AP++at+dmf   +++ dsk+s t+ la g+PG vag+  
       CTQ30391.1  65 DILRQGGNAVDAAVAVGYALAVTHPQAGNIGGGGFMMLRTKDGKTT-AIDFREMAPEQATRDMFlddQGNPDSKKSLTSHLASGTPGSVAGFSL 157
                      8****************************************99988.9******************9999************************ PP

                      HHHHH-SS-HHHHHHHHHHHHHH-EE--HHHHHHHHHCHHH.HHTSHHHHHHHEETTSE--TTSEE--HHHHHHHHHHHHHTTHHHHSSHHHHH CS
  G_glu_transpept  93 ahkkyGklpwadllepaiklareGfpvsealaralaeaeer.lkkdpelaklFlpegevlkagellkqpalAktLerlaeeGaeaFYkGelAek 185
                      a++kyG++p+++++ paikla+eGf v++ala+ l+++ ++ + ++++++++F+++ge+lk+g++l+q++l k+Le++ae+G++aFYkG +A++
       CTQ30391.1 158 ALEKYGTMPLNKVIRPAIKLAEEGFIVNDALADDLKTYGSEvIPQHENSKAIFWKNGEPLKKGDRLVQKNLGKSLELIAEHGPDAFYKGAIADQ 251
                      **************************************9988**************************************************** PP

                      HHHHHHHTT-S--HHHHHH---EEES-EEEEETTCEEEEE-TTCSHHHHHHHHHHHHCTTTGGGCTTTCHHHHHHHHHHHHHHHHHHHHH-SST CS
  G_glu_transpept 186 lvaelqkagGiltaeDLanykvevreplsadyrggytvyepppssggivllqiLnilegfdlkslssnsaetlhllvEamklayadRsrylgDp 279
                      +++e++k+gG++t++DLa yk+  r+p+s +yrg++++++pppssggi+++qiLnile+fd+++++ +sa+ +++++Ea+k+ayadRs+ylgDp
       CTQ30391.1 252 IADEMKKHGGLITKADLAGYKAVERTPVSGEYRGYEVYSMPPPSSGGIHIVQILNILENFDMQKYGFGSADAMQVMAEAEKHAYADRSEYLGDP 345
                      ********************************************************************************************** PP

                      TTSSSGHCHHHHHT-HHHHHHHHTT.BTTB..SGGGCSCGGCSCG.TTEEEEEEEEETTS-EEEEEEEESSTTTTSEBETTTTEBE--GGGGSB CS
  G_glu_transpept 280 dfvknptelveellskeyakeraklIkdkaatpsseyykaaeaaeesggTthlsvvDregnaVSltstinllFGsgvvvpgtGilLnnemddfs 373
                      dfv++p   ++ l+sk+yak +a++I+ ++a+pss++ +++ a+ es++Tth+svvD++gnaV++t+t+n++FG+g+v  ++GilLnn+mddfs
       CTQ30391.1 346 DFVNVP---WQALTSKAYAKAIAAEIDVNKAKPSSQIRPGKLAPYESNQTTHFSVVDKDGNAVAVTYTLNTTFGTGIVAGDSGILLNNQMDDFS 436
                      ***988...************************************************************************************* PP

                      S..TS..TTSCSTTSTTB--TT----B----EEEEETTEEEEEEEEESGGGHHHHHHHHHHHHHTT-S-HHHHHHS--EEESSSSTEEEESTTS CS
  G_glu_transpept 374 t..gvenafgldpspanaiePgkRplssmaPtivlkdgkpvlvlGaaGGsriisavlqvlvnvldlgldlqeavdaprihhqllpdkvevEegf 465
                      +  gv+n++gl+  +ana+eP+kRplssm+Ptiv+kdgk++lv+G++GGsrii++vlq++vn++d+g++++ea +apr+hhq+lpd+++vE+gf
       CTQ30391.1 437 AkpGVPNVYGLVGGDANAVEPKKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNTIDFGMNVAEATNAPRFHHQWLPDELRVEKGF 530
                      ********************************************************************************************** PP

                      .HHHHHHHHHTTSEEEESSSTCCCEEEEEEEETTTEEEEEE-TTT CS
  G_glu_transpept 466 seevveeLearGhkvkevedsssvvaavavakekgvleaasDprk 510
                      s ++++ Lea G+kv ++e ++s +++++    +g l++asDpr+
       CTQ30391.1 531 SPDTLKLLEAKGQKVAQKEAMGSTQSIMVGP--DGMLYGASDPRS 573
                      ***************************9997..***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4527.38
//
Query:       CTQ30392.1  [L=106]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-48  163.7  30.0    1.6e-48  163.5  30.0    1.0  1  DUF2756     Protein of unknown function (DUF2756)
  ------ inclusion threshold ------
       0.17   10.7   8.8        0.2   10.5   8.8    1.0  1  Mitofilin   Mitochondrial inner membrane protein
       0.53    9.0   2.9       0.52    9.0   2.9    1.1  1  Presenilin  Presenilin


Domain annotation for each model (and alignments):
>> DUF2756  Protein of unknown function (DUF2756)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5  30.0   2.7e-52   1.6e-48       1     104 []       1     102 [.       1     102 [. 0.99

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 2.7e-52
     DUF2756   1 mkrllllaallplavlaqpinvlnnpnqpGyvipsqqrlqtqmqtqqlqqkgmlkqqlktqtrlqqqklqnqlnnnsqrvqqgqpGelnarqqvlpntn 99 
                 mk++l+laal+pl+vlaqpin++nnpnqpGyv+psqqr+q++m++qq+qq++mlkq+l++qtr+qqq+lqnql++n+qr++qg  G+lna+qqv+pn+n
  CTQ30392.1   1 MKAILFLAALMPLGVLAQPININNNPNQPGYVVPSQQRMQNEMKVQQQQQQSMLKQDLNNQTRSQQQHLQNQLQTNQQRAAQG--GNLNAPQQVRPNNN 97 
                 9*********************************************************************************9..************** PP

     DUF2756 100 GGmln 104
                 GGml+
  CTQ30392.1  98 GGMLR 102
                 ***96 PP

>> Mitofilin  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   8.8   3.3e-05       0.2     363     402 ..      35      74 ..      31      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.3e-05
   Mitofilin 363 ireeyeekLrteLerqaeaheehLkdvlveqeieLkrefq 402
                  +++++++++ ++++q++ +++ L+++ ++q++ L+ + q
  CTQ30392.1  35 SQQRMQNEMKVQQQQQQSMLKQDLNNQTRSQQQHLQNQLQ 74 
                 5899*******************************87765 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.9   8.7e-05      0.52     221     268 ..      39      79 ..       2     105 .. 0.35

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 8.7e-05
  Presenilin 221 vvlaaeekkaevaeseeeeeaekkkeeasesskeeeseeesseksaqs 268
                 + +       e++ +++++++  k++ ++++++++++ +++ ++++q+
  CTQ30392.1  39 MQN-------EMKVQQQQQQSMLKQDLNNQTRSQQQHLQNQLQTNQQR 79 
                 111.......11111111111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3436  (0.191645); expected 358.6 (0.02)
Passed bias filter:                      895  (0.0499191); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 871.80
//
Query:       CTQ30393.1  [L=246]
Description: glycerophosphodiester phosphodiesterase, cytosolic [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-40  138.9   0.0    3.1e-40  138.6   0.0    1.1  1  GDPD      Glycerophosphoryl diester phosphodiesterase family
    0.00016   22.0   2.0    0.00042   20.7   0.0    2.6  3  GDPD_2    Glycerophosphoryl diester phosphodiesterase family


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.0   3.4e-44   3.1e-40       1     258 [.      12     238 ..      12     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 3.4e-44
                 TTTTTTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTSTECCTTCCCCSCCCSSGCCB...BHHHHH CS
        GDPD   1 HRGasgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrldkiakenkaqlsenrvrlefpfptleevl 99 
                 HRG ++  pEnTl++++  a  G+ +iEfD +l+kDg + +lHD+nl+rt +++g     +l +++l + d ++++ ++ ++++++      p l++v 
  CTQ30393.1  12 HRGGGKLAPENTLAAIDVGARYGHTMIEFDAKLSKDGQIFLLHDDNLERTSNGWG--VAGELAWDDLLKVD-AGSWFSREFKGEPL------PLLSQVA 101
                 *******************************************************..**************.99***********9......9****** PP

                 HHHHHCCSEEEEEEECCCCCCCHHHHHHTCHHHCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHTCTCTEEEEEEHHHHHHC-E.EECHCCCCCCC CS
        GDPD 100 kkpqnvglnieikipmlseakeeeelqivkeilksvdeilkkvlkkadkrkvifssfnpdilkllrekqpklpllflteggteaeadssleraakfaka 198
                 ++++ +g++++i+i+++   +  +    ++  l+++d +        +     +ssf+ d+l + +e++p+lp  +l++  +++ ++   ++    +++
  CTQ30393.1 102 ERCRRHGMMANIEIKPTTGLGPQTG---KVVALAARDLWQ-------GMTAPLLSSFEIDALEAAQEAAPELPRGLLLD--EWRDDW---RELTTRLGC 185
                 ***********************99...333333333333.......22344559***********************8..888888...889****** PP

                 TCCCCHHCCCHCCCEB.CHHHHHHHTT-EEEEBSB-THSHHHHHHHHCCC-SEEEES-HH CS
        GDPD 199 dallgevsavaeglgdpdlVkraksrglvvhvytvnnedeeemkrlleagvdgvitDfpd 258
                  +++ ++++++ +     +V ++k++gl ++vytvn++  ++ + ll++gvd+++tD +d
  CTQ30393.1 186 VSIHLNHKLLDAA-----RVASLKQAGLHILVYTVNKP--QRAAELLRWGVDCICTDAID 238
                 *************.....********************..9999*************998 PP

>> GDPD_2  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.53   4.7e+03      14      23 ..      60      69 ..      55      69 .. 0.76
   2 ?   -1.0   0.1      0.31   2.7e+03      11      17 ..     174     180 ..     170     184 .. 0.78
   3 !   20.7   0.0   4.7e-08   0.00042       5      29 ..     213     237 ..     211     238 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.53
      GDPD_2 14 relvgaGVdg 23
                r+  g+GV g
  CTQ30393.1 60 RTSNGWGVAG 69
                56679**975 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.31
      GDPD_2  11 avwrelv 17 
                 ++wrel 
  CTQ30393.1 174 DDWRELT 180
                 69**996 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 4.7e-08
      GDPD_2   5 WttddeavwrelvgaGVdgInTDdl 29 
                 +t++++   +el+++GVd I+TD +
  CTQ30393.1 213 YTVNKPQRAAELLRWGVDCICTDAI 237
                 8**********************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1889.53
//
Query:       CTQ30394.1  [L=356]
Description: glycerol-3-phosphate transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-30  105.7   0.0    4.5e-30  104.9   0.0    1.4  1  ABC_tran         ABC transporter
    8.5e-15   55.3   0.2      3e-14   53.6   0.2    2.0  1  OB_MalK          MalK OB fold domain
    6.9e-08   32.5   0.0    2.3e-07   30.8   0.0    2.0  1  TOBE_2           TOBE domain
    1.7e-07   31.7   0.1    4.8e-07   30.3   0.1    1.9  1  CysA_C_terminal  CysA C-terminal regulatory domain
    2.4e-07   30.9   0.0      0.013   15.3   0.0    2.2  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    0.00026   21.2   0.0    0.00049   20.3   0.0    1.7  1  AAA_33           AAA domain
    0.00026   20.9   0.0    0.00049   20.0   0.0    1.4  1  RsgA_GTPase      RsgA GTPase
     0.0011   19.3   0.7     0.0061   17.0   0.7    2.1  1  AAA_16           AAA ATPase domain
     0.0022   18.3   0.1     0.0087   16.3   0.0    1.9  2  AAA_22           AAA domain
     0.0028   18.1   0.0       0.14   12.6   0.0    2.6  3  AAA              ATPase family associated with various cellul
     0.0059   16.6   0.0     0.0086   16.0   0.0    1.2  1  Rad17            Rad17 P-loop domain
      0.008   15.6   0.0       0.25   10.7   0.0    2.1  1  SMC_N            RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.037   13.4   0.0    1.7  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.014   15.1   0.0      0.031   14.0   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
       0.02   15.4   0.1      0.072   13.6   0.0    1.9  2  AAA_18           AAA domain
       0.02   14.4   0.1      0.066   12.8   0.0    1.8  2  AAA_25           AAA domain
      0.043   13.7   0.2       0.24   11.3   0.0    2.1  2  NACHT            NACHT domain
      0.057   13.7   0.0       0.14   12.4   0.0    1.7  1  AAA_28           AAA domain
      0.079   12.9   0.0       0.12   12.2   0.0    1.2  1  ATPase_2         ATPase domain predominantly from Archaea
      0.086   13.2   0.0       0.38   11.1   0.0    2.0  2  RNA_helicase     RNA helicase
       0.11   11.6   0.1       0.19   10.9   0.1    1.3  1  NB-ARC           NB-ARC domain
       0.12   12.9   0.0       0.19   12.2   0.0    1.2  1  AAA_23           AAA domain
       0.12   11.8   0.1        1.2    8.5   0.0    2.0  2  PhoH             PhoH-like protein
       0.15   11.3   0.0       0.33   10.2   0.0    1.5  1  Zeta_toxin       Zeta toxin
       0.16   11.9   0.3       0.48   10.4   0.0    1.9  1  AAA_5            AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.0   6.3e-33   4.5e-30       2     136 ..      21     162 ..      20     163 .. 0.94

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 6.3e-33
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdeeiek 87 
                 + ++l++  ge +++vG++G+GKStLl+++agl++ t+G+i++d k ++e  +e  ++ i++++q+  l p+++v+en                e++++
  CTQ30394.1  21 QPLTLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVTSGDIWIDRKRVTE--MEPKDRGIAMVFQNYALYPHMSVEENmawglkirgmgkgLIAERVQE 117
                 57899*******************************************99..999****************************9999988877888999 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 a++ l+l++l +++     ++LSgGq+qrva+ ra++++p ++l+DEp 
  CTQ30394.1 118 AARILELDGLLKRRP----RELSGGQRQRVAMGRAIVRDPAVFLFDEPL 162
                 999999999888888....*****************************7 PP

>> OB_MalK  MalK OB fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.2   4.2e-17     3e-14       1      53 []     236     285 ..     236     285 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 4.2e-17
     OB_MalK   1 GSPaMNflpatveedg.vlvegggvtlplpeeqklalklyagkevilGiRPEhi 53 
                 GSPaMN+l++++++dg  + ++gg++lp + e+    + +ag++++lGiRPEh+
  CTQ30394.1 236 GSPAMNLLEGRISDDGgRFELAGGMQLPTNHEH----RRHAGRKMTLGIRPEHF 285
                 9***********************999998888....****************7 PP

>> TOBE_2  TOBE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   3.3e-10   2.3e-07       1      76 []     278     348 ..     278     348 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 3.3e-10
      TOBE_2   1 laiRPEklrlaaagganglsGtVedveylGsstryvvelaggqlvvvrqpnadrdsalapGdtVelswdpddavvl 76 
                 l+iRPE+  l+  ++++g++   + +e lG++ + + + ++++l vvr p+++   ++a+G+t++l+++ ++++++
  CTQ30394.1 278 LGIRPEHFILS-SQAQGGIPLLMDTLEILGADNLAHGRWGEQKL-VVRLPHQQ---RPAAGSTLWLHLPLEHLHLF 348
                 79********4.33357**********************99988.99999999...9*****************98 PP

>> CysA_C_terminal  CysA C-terminal regulatory domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   6.6e-10   4.8e-07       1      41 [.     241     285 ..     241     287 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 6.6e-10
  CysA_C_terminal   1 NlFhGrve.dG.klri.GglalpvP.elagadgqevvayVRPhDl 41 
                      Nl++Gr++ dG ++++ Gg++lp   e+  ++g++ ++++RP+++
       CTQ30394.1 241 NLLEGRISdDGgRFELaGGMQLPTNhEHRRHAGRKMTLGIRPEHF 285
                      9******545449***888****88899999************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.9e-05     0.013       1      53 [.      32      72 ..      32      91 .. 0.74
   2 !   13.5   0.0   6.7e-05     0.048     220     298 ..     118     194 ..     100     198 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.9e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlyd 53
                + v++Gp g+GKS+LL+   +l             +  +g+i++++++ ++ +
  CTQ30394.1 32 FIVMVGPSGCGKSTLLRMVAGLE------------RVTSGDIWIDRKRVTEME 72
                689****************9994............444445555544444444 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 6.7e-05
      AAA_21 220 gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQv.iltTHS 298
                   ++le ++  ++ +relS G+++  a+  a+ r++   +++l+DEp ++L+ kl       l +l+r++    + +TH+
  CTQ30394.1 118 AARILELDGLLKRRPRELSGGQRQRVAMGRAIVRDP---AVFLFDEPLSNLDAKLRVQMRLELQQLHRRLKTTsLYVTHD 194
                 566777888889999*******************99...**************998777777766666444444777776 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   6.8e-07   0.00049       2      47 ..      33      76 ..      32     199 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 6.8e-07
      AAA_33  2 vllvGlpGsGKstlaerllkklgavllss.dtlrrrlfgtdqqsktd 47
                +++vG++G+GKstl++ ++   g ++++s d++++r ++t+ ++k +
  CTQ30394.1 33 IVMVGPSGCGKSTLLRMVA---GLERVTSgDIWIDRKRVTEMEPKDR 76
                79**************999...9999876488999999988877763 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   6.9e-07   0.00049      88     130 ..      18      61 ..       2      69 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.9e-07
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  + ++ l+  ++d +++v+vG+SG GKStL+ ++++ +++  g++
   CTQ30394.1  18 QVIQPLTLDVADgEFIVMVGPSGCGKSTLLRMVAGLERVTSGDI 61 
                  55666666666669*****************9998766666655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.7   8.5e-06    0.0061      20      51 ..      28      56 ..      15     207 .. 0.52

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.5e-06
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellralekd 51
                ++g  e ++ +G+sG+GKs+l+r+++  le+ 
  CTQ30394.1 28 ADG--EFIVMVGPSGCGKSTLLRMVA-GLERV 56
                444..78999**************99.34433 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.2e-05    0.0087       6      28 ..      31      53 ..      27      83 .. 0.79
   2 ?   -1.1   0.0         3   2.2e+03      15      30 ..     105     120 ..     104     207 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.2e-05
      AAA_22  6 gilvvtGesGtGKTtllrrlleq 28
                 ++v +G+sG+GK+tllr+++  
  CTQ30394.1 31 EFIVMVGPSGCGKSTLLRMVAGL 53
                699***************99865 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3
      AAA_22  15 GtGKTtllrrlleqld 30 
                 G+GK + ++r++e + 
  CTQ30394.1 105 GMGKGLIAERVQEAAR 120
                 6666666666666553 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00019      0.14       2      20 ..      34      52 ..      33      86 .. 0.80
   2 ?    2.6   0.0      0.25   1.8e+02       8      66 ..     105     160 ..     103     188 .. 0.76
   3 ?   -2.4   0.0       8.2   5.9e+03      16      45 ..     210     241 ..     207     244 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00019
                EEESSTTSSHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavak 20
                +++Gp G+GK++l + va 
  CTQ30394.1 34 VMVGPSGCGKSTLLRMVAG 52
                789**************97 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.25
                 TSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEET CS
         AAA   8 GtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDE 66 
                 G+GK l+a+ v +   +++le++g   +      + ++ r  + +a     p ++++DE
  CTQ30394.1 105 GMGKGLIAERVQEA--ARILELDGLLKRRPRELSGGQRQRVAMGRAIVRD-PAVFLFDE 160
                 99*******99999..6778888877775544444555555555554444.78888888 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 8.2
                 HHHHHHHT..HEEEEEETTTCSSSSTTHHHHH CS
         AAA  16 kavakelg..vefleisgsellskyvgesekk 45 
                 k va+++g  ve++e  +s+++ +++g  +++
  CTQ30394.1 210 KGVAEQIGtpVEVYEKPASRFVASFIGSPAMN 241
                 67899987668889999999999999987766 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-05    0.0086      38      67 ..      23      52 ..       7      97 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-05
       Rad17 38 dvLesrkkriLLisGPsGCgkstvvkvLsk 67
                 +L+ +  + +++ GPsGCgkst +++++ 
  CTQ30394.1 23 LTLDVADGEFIVMVGPSGCGKSTLLRMVAG 52
                5566677778999************99874 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00035      0.25      24     189 ..      30     183 ..      11     214 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00035
                 SSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkk 121
                  +f ++vGp G+GKs ll  +    G       r ++ +  i + + ++ + k   ++++f+n     +++ ee ++   +k  g  +  i ++  + +
  CTQ30394.1  30 GEFIVMVGPSGCGKSTLLRMV---AGL--E---RVTSGDIWIDRkRVTEMEPKDRGIAMVFQNYALYPHMSVEE-NMAWGLKIRGMGKGLIAERVQEAA 119
                 578999999999999998765...553..2...44555555655555566666677777777777663333333.222233333333455666655555 PP

                 HHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 122 evsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn 189
                  + el    +  + +LSgG+++ va+    Ai  v+  +++l+De  ++LD+k + ++   l++ + +
  CTQ30394.1 120 RILELDGLLKRRPRELSGGQRQRVAMGR--AI--VRDPAVFLFDEPLSNLDAKLRVQMRLELQQLHRR 183
                 5555555555667788888888666543..33..5566677888888888887766665555544433 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.1e-05     0.037       7      51 ..      15      59 ..      11      96 .. 0.74
   2 ?   -2.4   0.0       3.5   2.5e+03      32      43 ..     105     116 ..      97     122 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-05
  Mg_chelatase  7 GqeeakraleiaaaGgHnlllvGppGsGKtmlakrlpsllpplse 51
                  G+++  + l++ +a g  +++vGp+G+GK+ l + +++l    s 
    CTQ30394.1 15 GKTQVIQPLTLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVTSG 59
                  777888889999999999**************9998887555555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.5
  Mg_chelatase  32 GsGKtmlakrlp 43 
                   G GK ++a+r++
    CTQ30394.1 105 GMGKGLIAERVQ 116
                   99*******987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.3e-05     0.031      18      39 ..      26      47 ..      13      51 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.3e-05
      AAA_29 18 eidlkg.atlltGpsGsGKSTll 39
                ++   g +++++GpsG GKSTll
  CTQ30394.1 26 DVAD-GeFIVMVGPSGCGKSTLL 47
                4443.358999***********8 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0    0.0001     0.072       1      48 [.      33      76 ..      33     124 .. 0.83
   2 ?   -1.4   0.0       4.5   3.2e+03      87     112 ..     162     186 ..     152     189 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.0001
      AAA_18  1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealde 48
                I+  G++G+GK+tl + ++ ++   v ++d++ ++  ++e +p+  d+
  CTQ30394.1 33 IVMVGPSGCGKSTLLRMVAGLE--RVTSGDIWIDRKRVTEMEPK--DR 76
                7789**************9999..999****9999999999998..43 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 4.5
      AAA_18  87 eseaakdikkvvLtaspeelleRlek 112
                 +s  + ++  v ++++ ++l +Rl++
  CTQ30394.1 162 LSNLDAKLR-VQMRLELQQLHRRLKT 186
                 445555555.99999999**9*9987 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.2e-05     0.066      28      54 ..      26      51 ..       4      81 .. 0.72
   2 ?   -1.4   0.0       2.1   1.5e+03      85     106 ..     179     199 ..     148     219 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.2e-05
      AAA_25 28 gllpagelallaGapgtGKttlaldla 54
                ++ + ge+++ +G++g+GK+tl+  +a
  CTQ30394.1 26 DV-ADGEFIVMVGPSGCGKSTLLRMVA 51
                55.579***************985544 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.1
      AAA_25  85 elrrRlravgealrddarllvl 106
                 +l+rRl+ +   +++d+ + ++
  CTQ30394.1 179 QLHRRLKTTSLYVTHDQVE-AM 199
                 4666666666666543333.33 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00034      0.24       3      21 ..      33      51 ..      31      56 .. 0.89
   2 ?   -0.5   0.0       1.4     1e+03      85     127 ..     156     193 ..     101     209 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00034
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                +++ G++G+GK+tLl+ +a
  CTQ30394.1 33 IVMVGPSGCGKSTLLRMVA 51
                899************9876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.4
                 EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEE CS
       NACHT  85 lilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltv 127
                 +++D   e  + l++k + ++r  L++l r+  l+++sl +t 
  CTQ30394.1 156 FLFD---EPLSNLDAKLRVQMRLELQQLHRR--LKTTSLYVTH 193
                 5544...444444444555777777777777..7777777765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00019      0.14       2      20 ..      33      51 ..      32      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00019
      AAA_28  2 ivitGgestGKTtlleaLa 20
                iv++G++++GK+tll+  a
  CTQ30394.1 33 IVMVGPSGCGKSTLLRMVA 51
                9**************9888 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00017      0.12      20      42 ..      30      52 ..      24      94 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
    ATPase_2 20 neiyfiYGpegsGKtaLlkeiie 42
                 e+++  Gp g+GK++Ll+ ++ 
  CTQ30394.1 30 GEFIVMVGPSGCGKSTLLRMVAG 52
                5789999***********98765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       5.2   3.7e+03       9      23 ..      14      28 ..       9      30 .. 0.83
   2 ?   11.1   0.0   0.00054      0.38       1      17 [.      33      49 ..      33      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 5.2
  RNA_helicase  9 eGKStlakeLakall 23
                   GK++++++L+ +++
    CTQ30394.1 14 DGKTQVIQPLTLDVA 28
                  69*******998876 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00054
  RNA_helicase  1 iwlyGpsgeGKStlake 17
                  i+++Gpsg+GKStl + 
    CTQ30394.1 33 IVMVGPSGCGKSTLLRM 49
                  789**********9987 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00027      0.19       7      40 ..      18      50 ..      14      59 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00027
                HHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHH CS
      NB-ARC  7 kviekLlekdelqslvvalvGmgGvGKttlakqi 40
                +vi+ L   d  +  ++ +vG  G+GK+tl++ +
  CTQ30394.1 18 QVIQPLT-LDVADGEFIVMVGPSGCGKSTLLRMV 50
                5666666.4444556999************9876 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00026      0.19      14      37 ..      24      48 ..       6      52 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00026
      AAA_23 14 eidF.skgltlItGpNGaGKTTild 37
                ++d  +  + + +Gp G+GK+T+l+
  CTQ30394.1 24 TLDVaDGEFIVMVGPSGCGKSTLLR 48
                444456678899***********97 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0017       1.2      18      48 ..      29      60 ..      14      67 .. 0.80
   2 ?    0.7   0.0      0.41     3e+02      50     108 ..     146     208 ..     138     213 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0017
                H-SEEEEE--TTSST.THHHHHHHHHHHHTTS CS
        PhoH 18 kndivfaiGpaGtGK.tylavalavealkkkk 48
                + ++++++Gp+G+GK t+l +++++e +++++
  CTQ30394.1 29 DGEFIVMVGPSGCGKsTLLRMVAGLERVTSGD 60
                567899*********66889999999887765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.41
                 SEEEEEE-S--T.T----SS---------TTTHHHHHHHTTTS...-TTCHHHHHHTTSEEEE CS
        PhoH  50 kriiltrpavea.geelGflpgdleekvdpylrplydaLkdll...gaekvekllekgkieva 108
                  r i+  pav   +e l  l+ +l+ +++  l+ l+  Lk++     +++ve ++ ++++ v+
  CTQ30394.1 146 GRAIVRDPAVFLfDEPLSNLDAKLRVQMRLELQQLHRRLKTTSlyvTHDQVEAMTLAQRVMVM 208
                 567777888855699999999999999999999999999886434488889888888888887 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00046      0.33      18      60 ..      32      74 ..      21      89 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00046
  Zeta_toxin 18 lillgGqpGAGKselaellkdelerqgnvvrldpDdlRelhPe 60
                 i+++G +G+GKs+l+++++   + +++ + +d+ ++ e+ P+
  CTQ30394.1 32 FIVMVGPSGCGKSTLLRMVAGLERVTSGDIWIDRKRVTEMEPK 74
                699***************9876555666666666666666665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00067      0.48       3      20 ..      34      51 ..      33      65 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00067
                EEE--SSSSHHHHHHHGG CS
       AAA_5  3 lLvGppGtgKselaerla 20
                ++vGp+G+gKs+l + +a
  CTQ30394.1 34 VMVGPSGCGKSTLLRMVA 51
                79***********99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2470.82
//
Query:       CTQ30395.1  [L=281]
Description: glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-20   74.1  19.8    1.1e-20   74.1  19.8    2.1  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   6.1      0.11     2e+03      19      68 ..       7      86 ..       5      90 .. 0.77
   2 !   74.1  19.8   6.2e-25   1.1e-20       2     183 ..      92     276 ..      91     278 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.11
  BPD_transp_1 19 llrpliivllslPsfvlaillvlvf.............................vilsilghlilp.viillllsaapyv 68
                   l++++ ++l l + v++++l+++f                             ++ +++g    p ++++l  ++++++
    CTQ30395.1  7 GLTIFSHTMLILGIAVILFPLYVAFvaatldnksvfetpmtlipgshllenmktIWVNGVGVNSAPfWLMMLNSFIMAFA 86
                  67788888889999999999999999999999999999999998888888888877777776666666666666666665 PP

  == domain 2  score: 74.1 bits;  conditional E-value: 6.2e-25
  BPD_transp_1   2 illGilaa...lnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilpviillllsaapyvrlirraalrslpkdlveaaralGasrw 95 
                   i++++l+a   + ++++l++l+ ++i+++l+lP+ v +++ v    ++  l  l  ++ ++l l+a +++++++r+++ +lp++l+eaar++Gas+ 
    CTQ30395.1  92 IVVSMLSAfaiVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVE---VIANLNMLDSYAGLTLPLMASATATFLFRQFFMTLPDELIEAARIDGASPM 185
                   667788888889************************6666663...457777888889*************************************** PP

  BPD_transp_1  96 qifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis...nggvlalviavlllnlvadilqrlldprv 183
                   + fr +vlP++++ ++++++++f++ +++++++++++++  lgt +  +  +  + e++   n +++a+++ +++ ++++ ++qr++ + +
    CTQ30395.1 186 RFFRDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIIQDVNLGTAVAGIKGMIATGEGTtqwNQVMAAMLLTLIPPVVIVLAMQRAFVRGL 276
                   ****************************************999999999999999999999999**********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2162.69
//
Query:       CTQ30396.1  [L=295]
Description: glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-18   67.5  21.4    1.2e-18   67.5  21.4    1.9  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   2.5      0.33     6e+03      29      55 ..      12      32 ..       6      85 .. 0.68
   2 !   67.5  21.4     7e-23   1.2e-18       1     184 [.      86     293 ..      86     294 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.33
  BPD_transp_1 29 slPsfvlaillvlvfvilsilghlilp 55
                  +lP++++a+ l+        l + i+p
    CTQ30396.1 12 WLPYVLVAPQLI------ITLIFFIWP 32
                  667777666655......333333333 PP

  == domain 2  score: 67.5 bits;  conditional E-value: 7e-23
  BPD_transp_1   1 gillGilaa..lnrnkkldkllrpliivllslPsfvlaillvlvf..................vilsilghlilpviillllsaapyvrlirraalr 77 
                   g+l++++ a  + +  +++++ ++l+ +++++ + v a+l++++f                   + +  g++++ v++++++ ++ y++l++ aal+
    CTQ30396.1  86 GLLISLFFAalVDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFnpgrglithflgelgydwNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQ 182
                   677788888899999999**************9999999999999999***************9999****************************** PP

  BPD_transp_1  78 slpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpG.lgtllleailgydyseis...nggvlalviavlllnl 170
                   s+p++lveaa ++Ga+++++f+k +lP+++p+ + +l++++++++ +++ +   ++ +G ++ +++ ++ +y   ++     ++++  v++++l+++
    CTQ30396.1 183 SIPRSLVEAAAIDGAGPIRRFFKLALPLIAPVSFFLLVVNLVYAFFDTFPVIDAATAGGpVQATTTLIYKIYREGFAGldlSASAAQSVVLMFLVII 279
                   ********************************************77777777666666668888888888888887778998999999999999999 PP

  BPD_transp_1 171 vadilqrlldprvr 184
                   ++ +  r+++ +vr
    CTQ30396.1 280 LTVVQFRYVESKVR 293
                   99999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2160.05
//
Query:       CTQ30397.1  [L=438]
Description: glycerol-3-phosphate transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-42  146.7  13.1    1.5e-42  146.3  13.1    1.1  1  SBP_bac_8      Bacterial extracellular solute-binding protein
    6.1e-35  121.7  12.8    8.5e-35  121.2  12.8    1.1  1  SBP_bac_1      Bacterial extracellular solute-binding protein
     0.0002   20.9   0.1       0.14   11.6   0.0    2.4  2  SBP_bac_6      Bacterial extracellular solute-binding protein
     0.0051   16.3   0.1       0.22   10.9   0.1    2.1  2  F_bP_aldolase  Fructose-bisphosphate aldolase class-II


Domain annotation for each model (and alignments):
>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.3  13.1   3.4e-46   1.5e-42       2     278 ..      44     367 ..      43     370 .. 0.84

  Alignments for each domain:
  == domain 1  score: 146.3 bits;  conditional E-value: 3.4e-46
                 HHHHHHHH-.TEEEEEEE-.-SSSHHHHHHHHHHTT---SEE.EEE-HHHHHHHHHTTSB--GG........GSTTHHH-HHHHHTT..--TS.----E CS
   SBP_bac_8   2 lakefekkt.gvkvnvvta.asndleqklkaalaagtapdidvvwanedalatlaeeglladls........dldnlddltdalaav..gydgklygvP 88 
                 la++f++++ ++k+  v+  +++++ +   aa  +g+ap+i  ++ +e   at+ +++++ ++         ++d+++ +++++ ++  +  g+l + P
  CTQ30397.1  44 LAQRFNAANpDYKIVPVYKgNYEQSLSAGIAAFRTGNAPAI--LQVYEVGTATMMASKAIKPVYqvfseagiKFDESQFVPTVAGYYtdSKTGHLLSQP 140
                 6899*************997888888888888888999975..6667777899**********9777777777777777988888885444788***** PP

                 EEEEEE-EEEEEHHHHHHS......---BHHHHHHHHHHHHHH-...SEGG---GGGGGGTHH..........ETTEE---H.....HHH.HHHHHHHH CS
   SBP_bac_8  89 yasetpyvliynkdlleka.....edpktwdellaaakklkgkf...glpdpasgwlqaalla..........kdgksldddg...gkdglkealellk 166
                 ++s+tp vl+ynkd+++ka     ++pktw++l a+ +klk +    g++  + gw q+  +           ++g + +d +   +k+++++ ++ll 
  CTQ30397.1 141 FNSSTP-VLYYNKDAFKKAgldpeQPPKTWQDLAAYTAKLKAAGmkcGYASGWQGWIQIENFSawhglpvatkNNGFDGTDAVlefNKPEQVKHIALLE 238
                 *****9.***********9999******************84442345555555555444333788888888777777766669999************ PP

                 HHHHTT-EE..-S..--SSTTTTTSBSEEEE-TTHHHHHH-T.TTSEEEE.--........S--EEEEEEEEEEBTTS-HHHH.HHHHHHHHHTTSHHH CS
   SBP_bac_8 167 klkdngkty..dtgadavsefanGevaftingswdiaaaqka.gkklgai.vp........kqgsfaggkglavpknaknedl.aAldFlkwltspenq 252
                 +++++g++   +  ++ +++f nG+ a+t+++s+++a++++  ++++g++ +p        +q +++gg++l+v+ ++++e++ + ++Fl +lt pen 
  CTQ30397.1 239 EMNKKGDFSyfGRKDESTEKFYNGDCAITTASSGSLADIRQYaKFNYGVGmMPydadvkgaPQNAIIGGASLWVMQGKDKETYtGVAKFLDFLTKPENA 337
                 *******55558889999**********************99567*****66788877666577*********************************** PP

                 HHHHHHH---BS-S-TTT....HHHHHH-H CS
   SBP_bac_8 253 aalaektgyipvnksaal....spevkkdp 278
                 a++++ktgy+p++++a++    + ++ k+p
  CTQ30397.1 338 AEWHQKTGYLPITTAAYDltrqQGFYDKNP 367
                 ****************97655566666666 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2  12.8   1.9e-38   8.5e-35      10     314 ..      41     337 ..      34     338 .. 0.88

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 1.9e-38
                 HHHHHHHHHHHHHTTEEEEEEEECHHHHHH...HHHHHHHTTSSSCSEEEE.CGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHHHCE CS
   SBP_bac_1  10 lqalvakafekehpgikVeiesvgsgslaq...kltlaiaaGdgpaDviav.dndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpkilds 104
                  + l+ ++f++++p++k++ ++   g++ q   ++++a+ +G++p  + +v + ++ +    +++  p+  ++ +  ++ ++  + +    ++++++++
  CTQ30397.1  41 VDSLA-QRFNAANPDYKIVPVYK--GNYEQslsAGIAAFRTGNAP-AILQVyEVGTATM-MASKAIKPVYQVFSEAGIKFDESQFVP----TVAGYYTD 130
                 56677.99***************..99999999**********88.*****65555555.555699999999999977776544444....55555554 PP

                 ..EE.ES.EEEEE.EEEEEEETTTHHCTTGGG...SHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCT........H CS
   SBP_bac_1 105 ..kv.ly.vPlya.argliYNkdlfekagldp...pwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgg........g 187
                   ++ l   P+++ + +l+YNkd f+kagldp   p+tW++l+++  klk++g k      g++ ++++++  ++++++ g +v++k++g         
  CTQ30397.1 131 skTGhLLsQPFNSsTPVLYYNKDAFKKAGLDPeqpPKTWQDLAAYTAKLKAAGMKC-----GYASGWQGWIQIENFSAWHGLPVATKNNGfdgtdavlE 224
                 3555********66*************************************77766.....*******************************9999999 PP

                 HCSHHHHSHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEE... CS
   SBP_bac_1 188 ldnpegvtaatylvklyavanltkelkgkgaenkdgaaalalfeaGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgi... 283
                 +++pe+v+ ++ l++++        +kg+ ++    ++ +  f++G++a++ +++++            +a++  ++k+++gv ++P+  + k++    
  CTQ30397.1 225 FNKPEQVKHIALLEEMN--------KKGDFSYFGRKDESTEKFYNGDCAITTASSGS------------LADIRQYAKFNYGVGMMPYDADVKGAPqna 303
                 99999999999999999........*************************9999888............9***************************** PP

                 .EEEEEEEEBTTCSTHHH...HHHHHHHHTSHHHH CS
   SBP_bac_1 284 .lgayglaipkgsknpea...AkkFldfllspeaq 314
                  +g+  l+++ g ++ e    + kFldfl+ pe++
  CTQ30397.1 304 iIGGASLWVMQGKDK-ETytgVAKFLDFLTKPENA 337
                 999999******999.55689***********987 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0     3e-05      0.14      48      81 ..     133     173 ..      92     176 .. 0.83
   2 !    6.9   0.0    0.0008       3.6     178     225 ..     311     355 ..     297     373 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3e-05
   SBP_bac_6  48 dgkyy..pygvgplvlavnkdrlkgrpv.....PksWaDLl 81 
                  g+    p++ ++ vl++nkd++k+  +     Pk+W+DL 
  CTQ30397.1 133 TGHLLsqPFNSSTPVLYYNKDAFKKAGLdpeqpPKTWQDLA 173
                 44444569999**************999999989*****96 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0008
   SBP_bac_6 178 spifmlvkkgkkkelakafidfllspevqailakaggvfPvvtnpavl 225
                 +++   + k+ +   +++f+dfl++pe +a +   +g +P++  +a +
  CTQ30397.1 311 WVM-QGKDKE-TYTGVAKFLDFLTKPENAAEWHQKTGYLPIT-TAAYD 355
                 332.344455.99999**************999999999995.44444 PP

>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1     5e-05      0.22       3      66 ..      44     106 ..      42     118 .. 0.82
   2 !    3.4   0.0    0.0097        44     146     191 ..     323     371 ..     304     425 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5e-05
                    HHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-HHHHHHHHHH CS
  F_bP_aldolase   3 lkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyaggaealaelvr 66 
                    l + +++A+     v+ +  +  +++ a + a++  ++P+Ilq+ e ++a++++  +a++++ +
     CTQ30397.1  44 LAQRFNAANPDYKIVPVYKGNYEQSLSAGIAAFRTGNAPAILQVYEVGTATMMA-SKAIKPVYQ 106
                    567788999999999999999***************************988844.666655544 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0097
                    --TT-TTTS--HHHHHHHHHHHH...-EEEE--SS---SS--SS..--T CS
  F_bP_aldolase 146 gvvaeeklyTdpeeaeefveetg...vdalAvaiGnvHGvykpkpkLdf 191
                    gv++  +++T+pe+a+e  ++tg   + + A  +    G y+++p  d+
     CTQ30397.1 323 GVAKFLDFLTKPENAAEWHQKTGylpITTAAYDLTRQQGFYDKNPGADI 371
                    333333499**************99888888888888888888766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3384.76
//
Query:       CTQ30398.1  [L=122]
Description: Toxin doc [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-08   35.3   0.1    9.8e-08   32.8   0.1    2.0  1  Fic       Fic/DOC family


Domain annotation for each model (and alignments):
>> Fic  Fic/DOC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   5.4e-12   9.8e-08       9      97 .]      13      86 ..       5      86 .. 0.71

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 5.4e-12
                HHHCHS-S------TS--SS-ST..EEEE---SCCCHHHHHHHHHHHHCHHT-S-HHHHHHHHHHHHHHH--SSS-HHHHHHHHHHHHH CS
         Fic  9 elhrlllqdigeeagefrdeevsegklesalappeevpaeleelleylnelekeeplekaaalhyefekiHPFaDGNgRtarlllnllL 97
                + h++ll+ ++               + + +++p + +a + ++l++++ ++  ++  +aa+ +  + + H F+DGN+Rta++++ l+L
  CTQ30398.1 13 QFHDRLLRVTP---------------GVAGMPDPGRAEAIMYRVLNKIEYEGVTDVCRLAAMHLLAISRGHIFNDGNKRTALFITLLFL 86
                55555544444...............2233455556666666666666666666699999999**********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1002.49
//
Query:       CTQ30399.1  [L=73]
Description: putative antitoxin YefM [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-17   63.3   0.1    1.5e-17   63.2   0.1    1.1  1  PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin 
  ------ inclusion threshold ------
      0.027   14.5   0.0      0.027   14.5   0.0    1.2  1  PHD_like         Antitoxin of toxin-antitoxin, RelE / RelB, T


Domain annotation for each model (and alignments):
>> PhdYeFM_antitox  Antitoxin Phd_YefM, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.1   1.6e-21   1.5e-17       1      52 [.       1      51 [.       1      69 [. 0.93

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 1.6e-21
                     CEEEEHHHHHHTHHHHHHHHHHHT-EEEEEETTEEEEEEEEHHHHHHHHH.H CS
  PhdYeFM_antitox  1 mkivsiseakanlselldeveegeepviItrrGkpvaVlvsleeyerlqelt 52
                     m++v++sea++nl+++l+ +++g + v+ItrrG++ aV++s+ee+er q+++
       CTQ30399.1  1 MRTVNYSEARQNLADVLESAVTGVP-VTITRRGHKSAVIISAEEFERYQAAR 51
                     9*********************885.***********************964 PP

>> PHD_like  Antitoxin of toxin-antitoxin, RelE / RelB, TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.1e-06     0.027       3      49 ..       2      46 ..       1      67 [. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.1e-06
                -EEEHHHHHHTHHHHHHHHHHT.--EEEEETT..EEEEEEEHHHHHH CS
    PHD_like  3 eelsitearkefsalidqvvkeykpvlvkrnrkkekvsiistdllke 49
                 +++ +ear+++  +++++v +  pv+++r r + +  iis++ ++ 
  CTQ30399.1  2 RTVNYSEARQNLADVLESAVTG-VPVTITR-RGHKSAVIISAEEFER 46
                7899******************.99****9.6667778899887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 575.43
//
Query:       CTQ30400.1  [L=237]
Description: leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-33  116.1   0.0    2.3e-33  115.6   0.0    1.2  1  ABC_tran      ABC transporter
    3.5e-09   36.9   4.6    0.00014   21.8   0.3    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    0.00097   18.8   0.1     0.0023   17.7   0.1    1.6  1  AAA_29        P-loop containing region of AAA domain
     0.0044   17.0   0.1       0.01   15.7   0.0    1.6  2  RsgA_GTPase   RsgA GTPase
     0.0074   15.7   0.1        2.5    7.5   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
     0.0078   16.6   0.3      0.014   15.8   0.2    1.6  1  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.011   15.6   0.1      0.022   14.7   0.1    1.4  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
      0.021   14.9   0.1      0.032   14.3   0.1    1.6  1  MMR_HSR1      50S ribosome-binding GTPase
      0.024   15.1   0.2      0.043   14.3   0.2    1.4  1  AAA_23        AAA domain
      0.027   14.1   0.6      0.099   12.2   0.2    1.9  2  AAA_25        AAA domain
      0.029   14.1   0.1      0.056   13.2   0.1    1.3  1  AAA_15        AAA ATPase domain
      0.032   13.5   0.0      0.049   12.9   0.0    1.2  1  Septin        Septin
       0.06   13.6   0.2       0.63   10.3   0.2    2.2  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
      0.098   12.2   0.0       0.18   11.4   0.0    1.5  1  cobW          CobW/HypB/UreG, nucleotide-binding domain
       0.11   12.7   0.3       0.24   11.6   0.3    2.0  1  AAA_33        AAA domain
       0.11   12.2   0.4        0.2   11.4   0.4    1.7  1  AAA_30        AAA domain
       0.11   11.3   0.1        1.7    7.3   0.1    2.5  3  ABC_ATPase    Predicted ATPase of the ABC class
       0.12   11.0   0.0       0.17   10.5   0.0    1.2  1  AAA_13        AAA domain
       0.13   12.1   0.6        0.3   11.0   0.1    1.8  2  NACHT         NACHT domain
       0.18   12.0   1.0       0.83    9.9   0.2    2.0  2  AAA_22        AAA domain
       0.19   11.7   0.1       0.38   10.8   0.1    1.4  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.31   11.3   1.5       0.69   10.1   1.4    1.9  1  AAA_28        AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   0.0   2.8e-36   2.3e-33       1     136 [.      21     165 ..      21     166 .. 0.92

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 2.8e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren...........esdeeiek 87 
                 l+nvsl++k+ge+v ++G nGaGK+tLl +l+g  +  +G+i +dgkd+++ q+ +++r+ ++++p+  ++f+++tv+en           + + +i+ 
  CTQ30400.1  21 LHNVSLHIKQGEIVTLIGANGAGKTTLLGTLCGDPRASSGRIVFDGKDITDwQTAKIMREAVAIVPEGRRVFSRMTVEENlamggffadrdQFQTRIKW 119
                 79*************************************************99**********************************766666666777 PP

                 HHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  88 alsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + + +   +  ++++ +++ ++SgG++q++a+ ral+++p+llllDEp+
  CTQ30400.1 120 VYELFPRLH--ERRI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
                 777777655..7777.678*****************************5 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.7   4.4e-06    0.0036       2      19 ..      34      51 ..      33     124 .. 0.83
   2 !   21.8   0.3   1.7e-07   0.00014     233     293 ..     134     191 ..     107     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.4e-06
      AAA_21  2 nvliGpNgsGKSnLLdal 19
                  liG+Ng+GK++LL +l
  CTQ30400.1 34 VTLIGANGAGKTTLLGTL 51
                679************998 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 1.7e-07
      AAA_21 233 parelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvi 293
                  a  +S G +++la+  al +++   +lll+DEp +gL P ++  +++ +++l++ g  ++
  CTQ30400.1 134 RAGTMSGGEQQMLAIGRALMSQP---RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIF 191
                 56789*******99999999988...************************99998665555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   2.8e-06    0.0023      12      39 ..      21      48 ..      13      52 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.8e-06
      AAA_29 12 fdghtieidlkgatlltGpsGsGKSTll 39
                +++ +++i++ +++ l+G++G+GK+Tll
  CTQ30400.1 21 LHNVSLHIKQGEIVTLIGANGAGKTTLL 48
                45566677755599*************8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.3e-05      0.01      88     128 ..      19      60 ..       4      80 .. 0.81
   2 ?   -2.4   0.0       4.8   3.9e+03      67      90 ..     178     201 ..     173     207 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.3e-05
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpelelktg 128
                  ++l++++ ++k+ ++++l+G  G+GK+tL+ +l ++ +++ g
   CTQ30400.1  19 QALHNVSLHIKQgEIVTLIGANGAGKTTLLGTLCGDPRASSG 60 
                  56677777788779*******************998666555 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.8
                  HHHHHHHHTTSEEEE--TTTHTTH CS
  RsgA_GTPase  67 elkeelealgyevllvsaktkegl 90 
                  ++ e+l++ g++++lv+++ +++l
   CTQ30400.1 178 DTIEQLREQGMTIFLVEQNANQAL 201
                  567788899999999877765544 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0031       2.5      25      43 ..      32      50 ..      17      52 .. 0.78
   2 !    6.5   0.0     0.006       4.9     135     200 ..      87     199 ..      56     214 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0031
                SEEEEEESTTSSHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldA 43
                ++  ++G+NG+GK+ ll  
  CTQ30400.1 32 EIVTLIGANGAGKTTLLGT 50
                47789*********99865 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.006
                 T.................................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH CS
                 x.................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e.................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk 184
                 e                                                 ++SgGe++++a+   +   + +p  l llDe    L    ++++ + ++
  CTQ30400.1  87 EgrrvfsrmtveenlamggffadrdqfqtrikwvyelfprlherriqragTMSGGEQQMLAIGRAL---MSQP-RLLLLDEPSLGLAPIIIQQIFDTIE 181
                 344444444444445555555556666666666666666666666666679*******99886442...3344.4788999999999999999999999 PP

                 HHCTT..SEEEEE-SSHH CS
                 xxxxx..xxxxxxxxxxx RF
       SMC_N 185 ekskn..aQfivislree 200
                 + +++  + f+v    ++
  CTQ30400.1 182 QLREQgmTIFLVEQNANQ 199
                 888654233333333344 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   1.8e-05     0.014      11      59 ..      20      67 ..      15     163 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.8e-05
      AAA_16 11 qLlsalervrsgrpelvllsGesGvGKsslvrellralekd.ggiflrgk 59
                +L+++   ++  ++e+v l+G+ G GK++l+ +l    +++ g i++ gk
  CTQ30400.1 20 ALHNVS--LHIKQGEIVTLIGANGAGKTTLLGTLCGDPRASsGRIVFDGK 67
                444443..3444559****************8887544444244445544 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   2.7e-05     0.022       7      23 .]     220     236 ..     215     236 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.7e-05
  BCA_ABC_TP_C   7 tPaEvrndPrVieAYLG 23 
                   t ++  ++++V+ AYLG
    CTQ30400.1 220 TGDALLANEAVRSAYLG 236
                   667788**********9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1     4e-05     0.032       2      37 ..      34      70 ..      33     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4e-05
                EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdin 37
                v ++G   +GK+tL+ +l+g+ +a  +++ +  +di+
  CTQ30400.1 34 VTLIGANGAGKTTLLGTLCGDpRASSGRIVFDGKDIT 70
                789*****************99999998888777775 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   5.2e-05     0.043      20      39 ..      32      51 ..       6      53 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.2e-05
      AAA_23 20 gltlItGpNGaGKTTildAi 39
                 ++ ++G NGaGKTT+l  +
  CTQ30400.1 32 EIVTLIGANGAGKTTLLGTL 51
                577899**********9655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   0.00012     0.099      26      52 ..      24      50 ..      17      54 .. 0.86
   2 ?   -1.3   0.0       1.7   1.3e+03      85      94 ..     112     121 ..      73     191 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
      AAA_25 26 vkgllpagelallaGapgtGKttlald 52
                v  ++  ge++ l+Ga g+GKttl+  
  CTQ30400.1 24 VSLHIKQGEIVTLIGANGAGKTTLLGT 50
                5668999****************9865 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.7
      AAA_25  85 elrrRlravg 94 
                 +++ R+++v 
  CTQ30400.1 112 QFQTRIKWVY 121
                 4444444333 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   6.8e-05     0.056      14      41 ..      21      49 ..      19      52 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.8e-05
      AAA_15 14 lkdveidlsee.ltvliGkNnsGKSsile 41
                l +v+++++   + +liG+N++GK+++l 
  CTQ30400.1 21 LHNVSLHIKQGeIVTLIGANGAGKTTLLG 49
                5677777777779*************995 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     6e-05     0.049       8      96 ..      35     127 ..      31     139 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6e-05
                 EEEEBTTSSCCCCCCTTSSSS----.--------.------S-EEEEEEEEETTCEE..EEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHH CS
      Septin   8 mvvGesglGkttlintlfetdliee.ekleease.kkkktveikkkkvvieedgvkl..nltviDtpgfGdavdnskswepiveyideqfeey 96 
                  ++G++g Gkttl+ tl+ +   ++ + + + ++ +  +t +i +++v i  +g ++  ++tv +    G +   ++ +++ ++ + e f ++
  CTQ30400.1  35 TLIGANGAGKTTLLGTLCGDPRASSgRIVFDGKDiTDWQTAKIMREAVAIVPEGRRVfsRMTVEENLAMGGFFADRDQFQTRIKWVYELFPRL 127
                 579****************99988843334444447779999999998886665554348999999999999999999999888888877664 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00077      0.63      26      42 ..     131     147 ..     119     182 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00077
     SbcCD_C  26 lsrssgtlSGGekqfla 42 
                   +++gt+SGGe+q+la
  CTQ30400.1 131 RIQRAGTMSGGEQQMLA 147
                 57899********7764 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00023      0.18       3      22 ..      34      54 ..      32      84 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00023
                EEEEESTTCCHHHHHHHHH.C CS
        cobW  3 tvltGflGsGKTtLlnhll.e 22
                + l G  G+GKTtLl +l+ +
  CTQ30400.1 34 VTLIGANGAGKTTLLGTLCgD 54
                6788999**********9952 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   0.00029      0.24       2      21 ..      34      53 ..      33     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00029
      AAA_33  2 vllvGlpGsGKstlaerllk 21
                v l+G++G+GK+tl+  l+ 
  CTQ30400.1 34 VTLIGANGAGKTTLLGTLCG 53
                789***********998875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   0.00024       0.2      16      45 ..      29      58 ..      18     196 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
      AAA_30 16 sgdrvavltGpAGtGKttalkalreaweaa 45
                ++  +++l G+ G+GKtt+l++l    +a+
  CTQ30400.1 29 KQGEIVTLIGANGAGKTTLLGTLCGDPRAS 58
                4456999*************9986555555 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0021       1.7     240     264 ..      26      51 ..      18      81 .. 0.91
   2 ?   -0.6   0.0      0.55   4.5e+02     323     348 ..     138     163 ..     125     165 .. 0.90
   3 ?   -0.1   0.0      0.37     3e+02     373     412 ..     173     211 ..     170     228 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0021
                 EEE-SS.EEEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 240 mgipkG.vtlIvGggfhGKsTLLeAl 264
                 + i++G +++++G +  GK+TLL  l
  CTQ30400.1  26 LHIKQGeIVTLIGANGAGKTTLLGTL 51 
                 679****99999***********876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.55
                 --HHHHHHHHHHHHHHTT-SEEEEEG CS
  ABC_ATPase 323 ASGStsqAanimealeagakllLiDE 348
                  SG   q  +i +al  + +llL+DE
  CTQ30400.1 138 MSGGEQQMLAIGRALMSQPRLLLLDE 163
                 599999999****************9 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.37
                 B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEE CS
  ABC_ATPase 373 itplvdrvrelykklgvstilvvggsgdyldvAdtvilme 412
                 i+ + d +++l ++ g++++lv   +++ l++Ad+  ++e
  CTQ30400.1 173 IQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLE 211
                 67788999999.889******************9866665 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00021      0.17      23      76 ..      38     102 ..      29     117 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00021
      AAA_13  23 GwNGaGKTtLSrllrslelgetepkfangsi........eitnge.........eldirVfNrdFveenls 76 
                 G+NGaGKTtL   l         p+ ++g i         ++  +         ++  rVf+r  veenl+
  CTQ30400.1  38 GANGAGKTTLLGTLCGD------PRASSGRIvfdgkditDWQTAKimreavaivPEGRRVFSRMTVEENLA 102
                 9********98888773......67777777444444453433337777888889999**********998 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00036       0.3       2      21 ..      33      52 ..      32      61 .. 0.88
   2 ?   -2.0   0.0       3.6   2.9e+03      52      76 ..     166     192 ..     150     203 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00036
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +v l G++G GKTtLl  l+
  CTQ30400.1 33 IVTLIGANGAGKTTLLGTLC 52
                5889************9887 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.6
                 .-HCHHHCCCCTS--SSS-C..CHHHH CS
       NACHT  52 rsladllfsqlpepaapvse..vwavl 76 
                 ++la ++ +q  + +++ +e  + ++l
  CTQ30400.1 166 LGLAPIIIQQIFDTIEQLREqgMTIFL 192
                 456666666666666666654433444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2     0.001      0.83       4      24 ..      30      50 ..      26      58 .. 0.87
   2 ?    0.5   0.0       0.8   6.6e+02      80     102 ..     143     166 ..     108     205 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
      AAA_22  4 tagilvvtGesGtGKTtllrr 24
                +  i++++G  G+GKTtll +
  CTQ30400.1 30 QGEIVTLIGANGAGKTTLLGT 50
                67899************9865 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.8
      AAA_22  80 ealeqalrarav.ielliiDEaqh 102
                 +++    ra +  ++ll++DE   
  CTQ30400.1 143 QQMLAIGRALMSqPRLLLLDEPSL 166
                 444444444444777888888544 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00046      0.38      10      39 ..      24      51 ..      13      58 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00046
                HHHHHHHCHTEEEEEEESTTSSHHHHHHHH CS
        TsaE 10 lgkklakalgdvilLeGdLGaGKTtlvrgl 39
                +  ++++  g++++L G  GaGKTtl   l
  CTQ30400.1 24 VSLHIKQ--GEIVTLIGANGAGKTTLLGTL 51
                3344444..889*************98766 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.4   0.00085      0.69       2      19 ..      34      51 ..      33     117 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00085
      AAA_28  2 ivitGgestGKTtlleaL 19
                + ++G+ ++GKTtll  L
  CTQ30400.1 34 VTLIGANGAGKTTLLGTL 51
                679***********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 1669.03
//
Query:       CTQ30401.1  [L=255]
Description: leucine/isoleucine/valine transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-32  112.0   0.0    4.6e-32  111.4   0.0    1.3  1  ABC_tran      ABC transporter
    2.6e-11   43.2   0.1    5.5e-11   42.1   0.1    1.6  1  BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette 
    2.7e-07   30.7   0.4     0.0022   17.8   0.1    2.2  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    2.5e-05   24.9   0.2    5.4e-05   23.8   0.3    1.7  1  AAA_23        AAA domain
    5.8e-05   23.0   0.3      0.035   13.8   0.0    2.1  2  AAA_15        AAA ATPase domain
    0.00064   20.0   0.9       0.02   15.2   0.9    2.2  1  AAA_22        AAA domain
    0.00087   18.8   0.1       0.21   11.0   0.0    2.1  2  SMC_N         RecF/RecN/SMC N terminal domain
      0.002   18.5   0.4     0.0068   16.8   0.4    1.8  1  AAA_16        AAA ATPase domain
     0.0078   15.9   0.0      0.016   14.9   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.016   14.9   0.1       0.14   11.8   0.0    2.1  2  AAA_30        AAA domain
      0.036   14.0   0.0      0.082   12.8   0.0    1.5  1  RsgA_GTPase   RsgA GTPase
      0.063   12.8   0.1       0.12   11.9   0.1    1.4  1  FeoB_N        Ferrous iron transport protein B
      0.068   12.8   0.2       0.24   11.0   0.0    1.9  2  SRP54         SRP54-type protein, GTPase domain
      0.081   12.0   0.2        1.9    7.5   0.0    2.1  2  T2SSE         Type II/IV secretion system protein
      0.082   13.1   0.0       0.15   12.3   0.0    1.6  1  AAA_33        AAA domain
       0.12   12.4   0.0       0.48   10.5   0.0    2.0  2  MMR_HSR1      50S ribosome-binding GTPase
       0.14   12.1   0.0       0.27   11.1   0.0    1.4  1  Rad17         Rad17 P-loop domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.0   4.3e-35   4.6e-32       1     136 [.      21     181 ..      21     182 .. 0.91

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 4.3e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................... RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................... 79 
                 ++nvsl+l+e e+v ++G+nGaGK+t++++l+g +kpt G+ill++++l+     +++r  +   +q+ +lf+e+tv en                   
  CTQ30401.1  21 VNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRDQHLEGlPGQQIARMGVVRTFQHVRLFREMTVIENllvaqhqqlktglfsgllk 119
                 58************************************************98889999***************************************** PP

                 .........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                          e+ ++++++l+++gl e +++ +    s+L +G ++r+++ar+++++p++l+lDEp 
  CTQ30401.1 120 tpafrraqsEALDRAATWLERIGLLEHANRQA----SNLAYGDQRRLEIARCMVTQPEILMLDEPA 181
                 ***99965555555777777777777666666....*****************************7 PP

>> BCA_ABC_TP_C  Branched-chain amino acid ATP-binding cassette transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   5.2e-14   5.5e-11       3      23 .]     233     253 ..     231     253 .. 0.96

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 5.2e-14
  BCA_ABC_TP_C   3 IAeGtPaEvrndPrVieAYLG 23 
                   +A GtP+E+rn+P+Vi+AYLG
    CTQ30401.1 233 LANGTPEEIRNNPDVIRAYLG 253
                   899*****************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   2.1e-06    0.0022       3      22 ..      35      54 ..      33      76 .. 0.83
   2 !   11.4   0.1    0.0002      0.21     258     294 ..     172     209 ..     148     218 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.1e-06
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                 liGpNg+GK++++ +l ++
  CTQ30401.1 35 SLIGPNGAGKTTVFNCLTGF 54
                69**************9876 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.0002
      AAA_21 258 gsllliDEpEngLHPkllrrllellkelsr.ngaQvil 294
                 + +l +DEp +gL+Pk +++l el+ el++ +++ ++l
  CTQ30401.1 172 PEILMLDEPAAGLNPKETKELDELIAELRNhHNTTILL 209
                 289**********************8888866677766 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.3   5.1e-08   5.4e-05      11      40 ..      22      52 ..      12     217 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 5.1e-08
      AAA_23 11 rdqeidF.skgltlItGpNGaGKTTildAik 40
                +++++++ ++ ++ ++GpNGaGKTT++++++
  CTQ30401.1 22 NNVSLELrEREIVSLIGPNGAGKTTVFNCLT 52
                6777888888999***************997 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.3e-05     0.035      16      48 ..      23      56 ..      20     105 .. 0.89
   2 !    7.3   0.3    0.0032       3.3     323     357 ..     171     205 ..     161     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.3e-05
      AAA_15 16 dveidlsee.ltvliGkNnsGKSsilealdlFln 48
                +v+++l e  +  liG+N++GK+++ + l  F +
  CTQ30401.1 23 NVSLELREReIVSLIGPNGAGKTTVFNCLTGFYK 56
                678888888899*************999987766 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0032
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnkt 357
                 ++ il+++EP a L p+  k+l +l++el n ++t
  CTQ30401.1 171 QPEILMLDEPAAGLNPKETKELDELIAELRNHHNT 205
                 789**************************999986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.9   1.9e-05      0.02       4     128 ..      30     210 ..      27     216 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.9e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee..................erpevv....fvtlpsstsskdllrellralglelka.......... 70 
                 ++ i+ ++G+ G+GKTt+ + l+  ++    ++                   +r +vv    +v l  ++   ++ ++ll a +++lk+          
  CTQ30401.1  30 EREIVSLIGPNGAGKTTVFNCLTGFYK----PTGgtillrdqhleglpgqqiARMGVVrtfqHVRLFREM---TVIENLLVAQHQQLKTglfsgllktp 121
                 678999*****************9994....333556688888888888888666666644444444444...44444444444444445555777788 PP

      AAA_22  71 ...........................erlsseellealeqalrarav..ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                                            + +s+ ++ ++ +  + +++v  +e+l++DE    l+   ++e+ e + +l n  +++++++L+
  CTQ30401.1 122 afrraqsealdraatwlerigllehanRQASNLAYGDQRRLEIARCMVtqPEILMLDEPAAgLNpkeTKELDELIAELRN--HHNTTILLI 210
                 88888888888888777777777775444444444466666666666699999999998888987533666666688888..888888886 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0002      0.21      23      44 ..      30      51 ..      20      58 .. 0.84
   2 !    5.7   0.0    0.0081       8.5     155     211 ..     168     224 ..     143     232 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
                TSSEEEEEESTTSSHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 23 sksftaivGpNGSGKsnlldAi 44
                ++++ +++GpNG+GK+ +++ +
  CTQ30401.1 30 EREIVSLIGPNGAGKTTVFNCL 51
                467889***********99876 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0081
                 CCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 155 kvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgv 211
                 +v +  + +lDe +a L  k++k++ el+ e +++    +  ++++m   +    ++
  CTQ30401.1 168 MVTQPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVMGISDRI 224
                 555666889*********************999876665555555554444333333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.4   6.4e-06    0.0068      25     107 ..      32     127 ..      22     212 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.4e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdg.giflrgkcdql..esaipysalaqalareellrqlldeaesaeleawrekleeala............a 107
                 e+v l+G+ G GK+++ ++l   ++ +g  i+lr +  +   +++i++  +++++   +l+r++ +  e+ +l a +++l++ l             +
  CTQ30401.1  32 EIVSLIGPNGAGKTTVFNCLTGFYKPTGgTILLRDQHLEGlpGQQIARMGVVRTFQHVRLFREM-TVIEN-LLVAQHQQLKTGLFsgllktpafrraQ 127
                 89*******************9999885233344444444677777777788888555555544.34344.444444444443334666444333331 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.5e-05     0.016      14      40 ..      23      49 ..      19      58 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-05
      AAA_29 14 ghtieidlkgatlltGpsGsGKSTllD 40
                + ++e+++++++ l+Gp+G+GK+T++ 
  CTQ30401.1 23 NVSLELREREIVSLIGPNGAGKTTVFN 49
                56778888889*************985 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014      0.14      18      50 ..      31      63 ..      24      68 .. 0.87
   2 ?    0.4   0.0      0.43   4.6e+02      81     120 ..     149     208 ..     122     213 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
      AAA_30 18 drvavltGpAGtGKttalkalreaweaaggrvi 50
                + ++ l Gp G+GKtt+ + l+  ++  gg+++
  CTQ30401.1 31 REIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIL 63
                568899****************99999988875 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.43
      AAA_30  81 k...............grarlepgtllivDEagmv....dtkqlaallkaaekag.akvi 120
                 +               +r  +++ ++l+ DE +       tk+l++l++++++++ ++++
  CTQ30401.1 149 RqasnlaygdqrrleiARCMVTQPEILMLDEPAAGlnpkETKELDELIAELRNHHnTTIL 208
                 033333344445566655556677888888854433477888888888888886514444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.8e-05     0.082      93     121 ..      24      53 ..      16      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.8e-05
                  HHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  93 lkellkd.ktsvlvGqSGvGKStLinallp 121
                  ++ +l++ +++ l+G+ G+GK+t+ n l++
   CTQ30401.1  24 VSLELRErEIVSLIGPNGAGKTTVFNCLTG 53 
                  556677769999***************987 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00011      0.12       3      26 ..      34      57 ..      32      60 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                EEEEESTTSSHHHHHHHHHTTSEE CS
      FeoB_N  3 valvGnpnvGkttlfnaltgakqk 26
                v l+G   +Gktt+fn ltg ++ 
  CTQ30401.1 34 VSLIGPNGAGKTTVFNCLTGFYKP 57
                789*****************8875 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00023      0.24       3      33 ..      33      63 ..      31      66 .. 0.84
   2 ?   -0.8   0.0      0.97     1e+03      82     119 ..     170     209 ..      96     218 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-EE CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkvl 33
                ++ l+G++GaGKTt    L   +k  g ++l
  CTQ30401.1 33 IVSLIGPNGAGKTTVFNCLTGFYKPTGGTIL 63
                6789************999999988776665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.97
                 TTSSEEEEE..E--SSTTHHHHHHHHHHHHHHHSSSEEEE CS
       SRP54  82 ekidvvlvD..TaGrlqndkelmeelkkikkvvkpdevll 119
                  + +++++D   aG + ++++ ++el +  +  +++ +ll
  CTQ30401.1 170 TQPEILMLDepAAGLNPKETKELDELIAELRNHHNTTILL 209
                 3445666664457777777777777665555555555554 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0018       1.9     126     158 ..      28      60 ..      18      95 .. 0.83
   2 ?    2.5   0.1     0.058        61     148     203 ..     194     248 ..     188     255 .] 0.83

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0018
       T2SSE 126 vrerglilvsGgTgsGKttllyallkeinksde 158
                 +rer ++ + G+ g GKtt+ + l  + + +  
  CTQ30401.1  28 LREREIVSLIGPNGAGKTTVFNCLTGFYKPTGG 60 
                 6788899999************99888776644 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.058
       T2SSE 148 allkeinks.derivtvEDpvEiqleganqvqlnakkakvtfadllraaLRlrPDri 203
                  l++e+ ++ +  i+++E  + + +   +++ ++++  + ++a++  + +R +PD+i
  CTQ30401.1 194 ELIAELRNHhNTTILLIEHDMKLVMGISDRIYVVNQ--GTPLANGTPEEIRNNPDVI 248
                 566677666589999***999999999999999999..99****************9 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00014      0.15       2      33 ..      34      97 ..      33     215 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
      AAA_33  2 vllvGlpGsGKstlaerl...lkklgavllssdt.............................l 33
                v l+G++G+GK+t+   l   +k++g+++l  d+                             +
  CTQ30401.1 34 VSLIGPNGAGKTTVFNCLtgfYKPTGGTILLRDQhleglpgqqiarmgvvrtfqhvrlfremtV 97
                679**********998876668888866666666466666665555555555555554333331 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00046      0.48       2      21 ..      34      53 ..      33      90 .. 0.91
   2 ?   -0.8   0.0       1.5   1.6e+03      62      80 ..     190     209 ..     143     230 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00046
                EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg 21
                v ++G   +GK+t++n ltg
  CTQ30401.1 34 VSLIGPNGAGKTTVFNCLTG 53
                789***************98 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.5
                 HHH.HHHHHHHHHHCTSEEE CS
    MMR_HSR1  62 eek.glgkaflaleeadlil 80 
                 +e  +l  +++++ ++ ++l
  CTQ30401.1 190 KELdELIAELRNHHNTTILL 209
                 22233344444333333333 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00026      0.27      36      66 ..      22      52 ..      19      58 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00026
       Rad17 36 kadvLesrkkriLLisGPsGCgkstvvkvLs 66
                +  +Le r+++i+ + GP G gk+tv + L+
  CTQ30401.1 22 NNVSLELREREIVSLIGPNGAGKTTVFNCLT 52
                56689999999***************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 1855.28
//
Query:       CTQ30402.1  [L=425]
Description: leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-60  203.5  27.9    3.4e-60  203.5  27.9    2.0  2  BPD_transp_2  Branched-chain amino acid transport system / pe
    1.1e-23   83.4   9.2    1.1e-23   83.4   9.2    3.2  5  DUF3382       Domain of unknown function (DUF3382)


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   5.7     0.032   2.9e+02      54     149 ..       5     105 ..       1     109 [. 0.57
   2 !  203.5  27.9   3.8e-64   3.4e-60       3     268 .]     112     398 ..     110     398 .. 0.99

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.032
  BPD_transp_2  54 llllallvallvgaavglllgllvlrlkvdeliitll...llsvlvgltlllltgitsgvkgqs..svkellgfagallsflsavivllalllvlav 145
                   ++++all a+++ +++g+++g++    + + ++ t +     ++++g ++++ +++ +  ++ +   v+++ ++ +a+    +++  +l++llv+av
    CTQ30402.1   5 QIAMALLSAVMFFILAGVFMGVQLELNGTKLVVDTAAdirWQWIFIGTAVVFFFQLLRPLFQKAvkNVSGPKFIMPAIDGSTVKQKLFLIALLVIAV 101
                   4777778888888888888887777777666666655666666666666666666666655544223334444444444444444446666666666 PP

  BPD_transp_2 146 llll 149
                    + +
    CTQ30402.1 102 AWPF 105
                   6655 PP

  == domain 2  score: 203.5 bits;  conditional E-value: 3.8e-64
  BPD_transp_2   3 lnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvglt 99 
                   + ++tl++i++i++lGl++v+g++G++ lg ggf+a+Gay++all ++++  ++++l++a lv+aa+g+llg++vlrl+ d+l+i++l++ ++v+++
    CTQ30402.1 112 VDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPLAGLVSAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRIL 208
                   6799********************************************************************************************* PP

  BPD_transp_2 100 lllltgitsgvkgqssvkellgfagallsflsaviv........................llalllvlavllllrrtrfGralravgeneeaaralG 172
                   ll++t+it+g++g+s+++++++f  +++  + +  +                        ll+++l l+v+ +l+r+++Gra++a++e+e a+r lG
    CTQ30402.1 209 LLNNTEITGGPNGISQIPKPTFFGLEFSRSAREGGWdtfsnffgvkydpsdrviflylvaLLLVVLSLFVINRLLRMPLGRAWEALREDEIACRSLG 305
                   ************************************************************************************************* PP

  BPD_transp_2 173 invkrvklltfvisgalAglaGallalllgsipp.nigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   ++++r+kl++f is+a+Ag+aG l+a+++g+++p ++ +  +  ++a+vvlGg+gs ++++++a++++v+ +l++ +     e+++++lg l++l++
    CTQ30402.1 306 LSPTRIKLTAFTISAAFAGFAGTLFAARQGFVSPeSFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFN----EYSMLMLGGLMVLMM 398
                   ****************************************************************************96....99**********997 PP

>> DUF3382  Domain of unknown function (DUF3382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   9.2   1.2e-27   1.1e-23       4      97 .]       7     103 ..       5     103 .. 0.98
   2 ?   -3.9   0.7         2   1.8e+04      13      25 ..     116     128 ..     114     132 .. 0.73
   3 ?   -0.6   0.1      0.19   1.7e+03      41      64 ..     270     293 ..     247     326 .. 0.63
   4 ?   -3.6   0.1       1.6   1.4e+04      13      22 ..     348     357 ..     344     365 .. 0.64
   5 ?   -3.3   0.5       1.3   1.1e+04       6      16 ..     364     374 ..     357     379 .. 0.64

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 1.2e-27
     DUF3382   4 knAliaallalvlfvpilGlqleldgtrlvlep....rwglvaiavavvfvgqLlrplllqalkarkklkkveskadgvlvltqrwiillllvvAlvw 97 
                   Al++a+++++l+++++G+qlel+gt+lv+ +    rw++++i+ avvf++qLlrpl+++a+k+++++k + ++ dg++v +q++++++llv+A++w
  CTQ30402.1   7 AMALLSAVMFFILAGVFMGVQLELNGTKLVVDTaadiRWQWIFIGTAVVFFFQLLRPLFQKAVKNVSGPKFIMPAIDGSTV-KQKLFLIALLVIAVAW 103
                 57******************************************************************************9.***************9 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2
     DUF3382  13 alvlfvpilGlql 25 
                 +l +++ ilGl l
  CTQ30402.1 116 TLTMIYIILGLGL 128
                 6778888888855 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.19
     DUF3382  41 vaiavavvfvgqLlrplllqalka 64 
                 ++++  +  + +Llr  l +a+ a
  CTQ30402.1 270 LLVVLSLFVINRLLRMPLGRAWEA 293
                 222222222335555555555555 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 1.6
     DUF3382  13 alvlfvpilG 22 
                 a+vl++++lG
  CTQ30402.1 348 AFVLAIVVLG 357
                 4455555544 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 1.3
     DUF3382   6 Aliaallalvl 16 
                 A+i a+++lv+
  CTQ30402.1 364 AVILAAILLVV 374
                 45555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1033  (0.0576162); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3107.32
//
Query:       CTQ30403.1  [L=308]
Description: leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-69  233.2  42.2    3.4e-69  233.0  42.2    1.0  1  BPD_transp_2  Branched-chain amino acid transport system / pe


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.0  42.2   1.9e-73   3.4e-69       2     268 .]      12     292 ..      11     292 .. 0.99

  Alignments for each domain:
  == domain 1  score: 233.0 bits;  conditional E-value: 1.9e-73
  BPD_transp_2   2 ilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsl....lllallvallvgaavglllgllvlrlkvdel......... 85 
                   ++n++tl++++a++A+G+++v+gi+G+in++hg+++++G+yv+++++a+l+++     +l+++++++++++++ ++g+++ r+ ++++         
    CTQ30403.1  12 MFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMgidtSWLLVAAGFVGAIVIASAYGWSIERVAYRPVrnskrlial 108
                   89*********************************************************************************************** PP

  BPD_transp_2  86 iitllllsvlvgltlllltgitsgvkgqs.....svkellgfagallsflsavivllalllvlavllllrrtrfGralravgeneeaaralGinvkr 177
                   i++++++++l++++   lt+++++v+ +s     +v++++++++a +++++ vi++++++++la++l++r++r+Gra+ra++e+ ++a +lGin++r
    CTQ30403.1 109 ISAIGMSIFLQNYVS--LTQGSRDVALPSlfngqWVVGHSDSFSATITTMQLVIWVVTFIAMLALTLFIRYSRMGRACRACAEDLKMASLLGINTDR 203
                   ***************..999**999999999999*************************************************************** PP

  BPD_transp_2 178 vklltfvisgalAglaGallalllgsippnigvglgfnaiaavvlGgagsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   v++ltfvi++a+A++aG+ll +++g+i+p+ig+++g++a++a+vlGg+gs+ g++iG+li+g++++l++++l  +te+++v+++allilvl
    CTQ30403.1 204 VIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIAEALSSAYL--STEYKDVVSFALLILVL 292
                   ***********************************************************************9..68*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2208.68
//
Query:       CTQ30404.1  [L=369]
Description: leucine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-62  210.7   5.3    5.4e-62  210.4   5.3    1.0  1  Peripla_BP_6  Periplasmic binding protein
    1.3e-29  103.4   0.0    1.8e-29  103.0   0.0    1.1  1  ANF_receptor  Receptor family ligand binding region
    1.4e-19   70.4   0.0    1.8e-19   70.0   0.0    1.1  1  Peripla_BP_5  Periplasmic binding protein domain
     0.0016   17.3   0.0     0.0029   16.5   0.0    1.3  1  Fe-ADH        Iron-containing alcohol dehydrogenase
  ------ inclusion threshold ------
      0.085   12.6   0.4        4.4    7.0   0.0    2.7  3  PGM_PMM_I     Phosphoglucomutase/phosphomannomutase, alpha/be


Domain annotation for each model (and alignments):
>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.4   5.3   1.5e-65   5.4e-62       2     340 ..      26     362 ..      25     364 .. 0.94

  Alignments for each domain:
  == domain 1  score: 210.4 bits;  conditional E-value: 1.5e-65
                   EEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEEE CS
  Peripla_BP_6   2 ikiGlltplsGpyassgksllagaqaafeeiNaaGGinGrkielverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvig 98 
                   ik+++++++sGp+a +g + ++ga+ a+++iNa+GGi+G k+  ve+Dda dp++a+++a++ v+ dg+++++g l+s+ ++ +++++++ g+++i+
    CTQ30404.1  26 IKVAVVGAMSGPVAQWGDMEFNGARQAIKDINASGGIKGDKLVAVEYDDACDPKQAVAVANKIVN-DGIQYVIGHLCSSSTQPASDIYEDEGILMIS 121
                   9****************************************************************.******************************* PP

                   SS-HHCC...TTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEEEEESSHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT-S CS
  Peripla_BP_6  99 pagltge...kcspyvfslgpsysaqasalveylakelggkkvalvyadyafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlqikaagad 192
                   p+++++e    +++y+ ++++ +s+q+ ++++y++++++  ++a++ +  ++g  +++++++ +k+aG ++v    +++g+ dfsa+++++k+++ d
    CTQ30404.1 122 PGATNPEltqRGYQYIMRTAGLDSSQGPTAAKYIVEKVKPQRIAIIHDKQQYGEGLARSVQDNLKKAGANIVFFDGITAGEKDFSALLARLKKENID 218
                   **9997544499************************************************************9************************ PP

                   EEEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC-CHHHHHHHHHHHHTTEEEEESCSTCCCSHHHHHHHHHHHHHHTTGGC--H.HHHHHHHHHHH CS
  Peripla_BP_6 193 avllagtgadlaallkaaaeaGldakrillvswsgseedlkalggeaaegvlavtpyfpdldnpavrafvaayeaayggapppsq.faaggyiaadl 288
                   +v+ +g+ + + ++l++a+++Gl+   + ++  ++++++l  ++g+aaeg+l++ p  +d ++pa+ a+v+a++a  ++   ps  + + +y+a++ 
    CTQ30404.1 219 FVYYGGYYPEMGQMLRQARSVGLKT--VFMGPEGVGNASLSNIAGAAAEGMLVTMPKRYD-QDPANSAIVNALKAEKKD---PSGpYVWITYAAVQS 309
                   ************************4..65666669*********************9999.68*********9887554...65516667******* PP

                   HHHHHHCCTHCCHHHHHHHHHHS-BECCCTCCBEECTTSBEE--EEEEEE-.T CS
  Peripla_BP_6 289 llealkaagsltreavraaleslgfdgllgplkftaedhqasrpvyvvqvd.g 340
                   l++a+ ++gs  + ++++ l++ g ++++gpl+++++    +  + v+q+  +
    CTQ30404.1 310 LAQAMDRTGSQQPLDLIKDLKAHGAKTVIGPLTWDEKGDLKGFEFGVFQWHaD 362
                   ********************************999888777888888888765 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   0.0   5.1e-33   1.8e-29       5     353 ..      48     362 ..      45     363 .. 0.88

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 5.1e-33
                   HHHHHHHHHHT-TTSSTTEEEEEEEEE-TT-HHHHHHHHHHHCCCCEEEEEE-SSHHHHHHHHHHHCCTT-EEEESS---GGGG-TTTTTTEEESS- CS
  ANF_receptor   5 AmklAveeinsdpnllpgiklgyeiidtccdfslaleaaldflkgkvvaviGpssssvsdavaslanlfkiPvisygstspelsdknryptflrtvp 101
                    ++ A+++in+++++ +  kl +   d++cd+++a+++a++++++ +  viG  +ss++ +++ + +   i +is+g+t+pel+  + y++++rt+ 
    CTQ30404.1  48 GARQAIKDINASGGIKG-DKLVAVEYDDACDPKQAVAVANKIVNDGIQYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQ-RGYQYIMRTAG 142
                   6899********77665.5*************************77************************************998.677******** PP

                   -CHHHHHHHHH.HHHHTT--EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEESTCHHHCHHHHHHHHHHTT.T--EEEEEE-HHHHHHHHHHH CS
  ANF_receptor 102 sdtsqaqAivd.ilkhfgWkkvaliysdddygesglqaleeeleergicvalkekipessnddevvrkllkeiks.karvivlfcssedarellkaa 196
                    d+sq+   ++ i+++ + +++a+i++++ yge+++ +++++l++ g ++++ + i+     ++++++ll ++k+ + + ++   + +++ + l++a
    CTQ30404.1 143 LDSSQGPTAAKyIVEKVKPQRIAIIHDKQQYGEGLARSVQDNLKKAGANIVFFDGIT---AGEKDFSALLARLKKeNIDFVYYGGYYPEMGQMLRQA 236
                   ******888874778******************************************...78888888888888878899**99************* PP

                   HHTTS-STTEEEEETCHCCCECTTS-CC..HHHHHTT-EEEEE--B-HHHHHHHHHST--CCCSSSTCCGSTTCCHHHHH...HHHHHHHHHHHHHH CS
  ANF_receptor 197 rrlgltgeeyvwiasdawtsslvldkpeltgleaaegvlgfrlkdpnspkfsefldkreklsdekqnyenegkeqisyqaalmYdaVyllaeAlnkl 293
                   r++gl +   v+++ +++++++ ++        aaeg+l+   k+ +++   + +          +  + e+k +  + ++ +Y aV  la+A++++
    CTQ30404.1 237 RSVGLKT---VFMGPEGVGNASLSNIA----GAAAEGMLVTMPKRYDQDPANSAI---------VNALKAEKKDPSGPYVWITYAAVQSLAQAMDRT 317
                   ******9...*********99999954....468999999999887765555555.........3445556666777889999************** PP

                   HCHHSSSHCCB-HHHHCCHHHHHHHHHHHT-EEEETTSCEEB-TTSBBE.-EEEEEEEECT CS
  ANF_receptor 294 lrkkkpgralscntlkpweggqkllrylrnvnfeGltGdvkfdengdrv.ptydilnlqgs 353
                   ++                ++  +l + l+    + + G ++ de+gd++ + + +++++ +
    CTQ30404.1 318 GS----------------QQPLDLIKDLKAHGAKTVIGPLTWDEKGDLKgFEFGVFQWHAD 362
                   *3................344445559999999999*********************9976 PP

>> Peripla_BP_5  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0     5e-23   1.8e-19       1     324 [.      26     346 ..      26     366 .. 0.87

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 5e-23
  Peripla_BP_5   1 ikvGvLhSlsGtmaisekslkdaallaieeinaagGvlgrkieavvvdpasdwelfaekaeklieedkvevvfGcwtSasRkavlpvveelnalLfY 97 
                   ikv v+  +sG +a       ++a+ ai++ina+gG++g k+ av +d a d+++  + a+k+++ d+++ v+G   S+s +   +++e++  l++ 
    CTQ30404.1  26 IKVAVVGAMSGPVAQWGDMEFNGARQAIKDINASGGIKGDKLVAVEYDDACDPKQAVAVANKIVN-DGIQYVIGHLCSSSTQPASDIYEDEGILMIS 121
                   89***********************************************************9987.******************************* PP

  Peripla_BP_5  98 pvqYEGeEsskn...viYtGaapnqqaipavdyllselgakrvflvGsdyvypretnrilkallkakggevvgeeYlplgssdvqkivakikkakpd 191
                   p     e +++    ++ t      q   a++y++++   +r++++     y    +r +++ lk+ g ++v  + ++ g++d+++++a++kk + d
    CTQ30404.1 122 PGATNPELTQRGyqyIMRTAGLDSSQGPTAAKYIVEKVKPQRIAIIHDKQQYGEGLARSVQDNLKKAGANIVFFDGITAGEKDFSALLARLKKENID 218
                   988776666554111566777778889999******************************************************************* PP

  Peripla_BP_5 192 vvlstinGdsnvafykelkeagikaekipvvslsvaeeelaaidaealvGhlaawnYfqsvdtpenkafvakfkarvgedrvtndpmeaayiqvklw 288
                   +v+      ++ ++ ++ ++ g+  +++ +    v+++ l++i  +a++G l +++     + p+n+a+v++ ka+ ++ +     +  +y +v+ +
    CTQ30404.1 219 FVYYGGYYPEMGQMLRQARSVGL--KTVFMGPEGVGNASLSNIAGAAAEGMLVTMPKRY-DQDPANSAIVNALKAEKKDPS--GPYVWITYAAVQSL 310
                   **976555666666666666666..567888899******************9987433.3679*********99877754..4556679******* PP

  Peripla_BP_5 289 aqAvekagstdvekvreallgqelkapeGevkidpe 324
                   aqA+ + gs+++ ++ + l  +  k+  G+++ d++
    CTQ30404.1 311 AQAMDRTGSQQPLDLIKDLKAHGAKTVIGPLTWDEK 346
                   ************999999999999999988888775 PP

>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     8e-07    0.0029      11      85 ..     152     220 ..     145     221 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 8e-07
                 GGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EE CS
      Fe-ADH  11 leelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvv 85 
                 +++    ++k + +r+ i++dk+ +  +gl++ v++ l++ag +++ fdg++    +++  +++a++++e++d+v
  CTQ30404.1 152 AKY---IVEKVKPQRIAIIHDKQQY-GEGLARSVQDNLKKAGANIVFFDGITA--GEKDFSALLARLKKENIDFV 220
                 444...445555569********98.*************************54..56678899999999999998 PP

>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.03   1.1e+02      59      90 ..      16      47 ..      10      65 .. 0.82
   2 ?    7.0   0.0    0.0012       4.4      30      75 ..     151     196 ..     145     206 .. 0.89
   3 ?   -2.5   0.0       1.1   3.9e+03      61      91 ..     259     290 ..     254     292 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.03
                HHHHHHHCCT-CEEEEEEB-HHHHHHHHHHCC CS
   PGM_PMM_I 59 alaaglaanGvevillgllptPavsfairklk 90
                a+ + ++a++++v ++g ++ P++++   +++
  CTQ30404.1 16 AMSHAAMAKDIKVAVVGAMSGPVAQWGDMEFN 47
                6778899****************998766655 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0012
                 HHHHCHHCSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE CS
   PGM_PMM_I  30 iaeylkaeakkkkvvvGrDtRvssrelaealaaglaanGvevillg 75 
                 +a+y+ ++ k +++++ +D   +++ la+++   l ++G++ ++++
  CTQ30404.1 151 AAKYIVEKVKPQRIAIIHDKQQYGEGLARSVQDNLKKAGANIVFFD 196
                 677888888899*****************************99887 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.1
                 HHHHHCCT-CEEEEE.EB-HHHHHHHHHHCCE CS
   PGM_PMM_I  61 aaglaanGvevillg.llptPavsfairklka 91 
                 +ag+aa+G+ v + + +   Pa s+++++lka
  CTQ30404.1 259 IAGAAAEGMLVTMPKrYDQDPANSAIVNALKA 290
                 78889999988888877777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2708.70
//
Query:       CTQ30405.1  [L=47]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.21s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 385.75
//
Query:       CTQ30406.1  [L=127]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-53  177.6   0.1    8.3e-53  177.5   0.1    1.0  1  PanZ             Acetyltransferase (GNAT) domain, PanZ
    2.7e-06   27.6   0.0    2.8e-06   27.5   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.2e-05   23.9   0.0    3.4e-05   23.8   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    0.00058   20.2   0.0    0.00082   19.8   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0034   17.3   0.1     0.0073   16.2   0.1    1.5  1  FR47             FR47-like protein
  ------ inclusion threshold ------
      0.025   14.3   0.0        8.2    6.3   0.0    2.3  2  Lsm_C            Lsm C-terminal


Domain annotation for each model (and alignments):
>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.5   0.1   2.8e-56   8.3e-53       1     128 []       2     125 ..       2     125 .. 0.99

  Alignments for each domain:
  == domain 1  score: 177.5 bits;  conditional E-value: 2.8e-56
        PanZ   1 kltierltelsaqdkiDLakIypaqsaealeaalteegalfaarFNdRlLgAvkveledkeaelsdlcVRevTRrRGVgsyLleearrqaPevkswvla 99 
                 klti rl+++s+qd+iDL kI+p+q+ ++l+  l+e+++l+aarFN+RlLgAv+v+l++ e+elsdlcVRevTRrRGVg+yL+ee++r++P+++sw++a
  CTQ30406.1   2 KLTIIRLQHFSDQDRIDLGKIWPSQDLSTLT--LDENHRLYAARFNERLLGAVRVTLRGVEGELSDLCVREVTRRRGVGQYLVEETLRDNPAINSWRVA 98 
                 89*****************************..****************************************************************** PP

        PanZ 100 eedvkeldlavlqaflealgfaaesegye 128
                 +++v+  d+ v++af++algf+a+++g+e
  CTQ30406.1  99 DQGVE--DRGVMAAFMQALGFSAQQNGWE 125
                 ***99..89*******************6 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   9.4e-10   2.8e-06      28      87 ..      32      87 ..       4     117 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 9.4e-10
                    HHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHH CS
  Acetyltransf_1 28 fsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealee 87
                      +e+ +l++a+++++l+G ++++ +      ++++ +l V++  r++G+G+ L+e+ ++
      CTQ30406.1 32 TLDENHRLYAARFNERLLGAVRVTLRGV----EGELSDLCVREVTRRRGVGQYLVEETLR 87
                    3457779*********************....8*********************998665 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.1e-08   3.4e-05      20      79 ..      26      88 ..       8     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.1e-08
  Acetyltransf_10 20 ealrerieegealllvaeeggkivGvielrdgs...hisllfVdpeyrgqGigkaLleaveee 79
                     + l+    ++++ l++a  +++++G+++++ ++   ++s l+V++  r++G+g+ L+e+ ++ 
       CTQ30406.1 26 QDLSTLTLDENHRLYAARFNERLLGAVRVTLRGvegELSDLCVREVTRRRGVGQYLVEETLRD 88
                     5566666799*****************985555578*********************997765 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.7e-07   0.00082       2      74 ..      36     117 ..      35     119 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.7e-07
                     TEEEEEEEETTEEEEEEEEEEES..TCTEEEEE-GGGTTSSHHHHHHHH............TT.SEEEEEEEEETHH.HHHHHHHHTTE CS
  Acetyltransf_7   2 kgevfVaeddgkivGfialslld..aeitrlaVdpeyrgkGiGraLlea............ae.kgiileqlelnae.kaikfYeklGF 74 
                     +++++ a+ +++ +G ++++l++  +e+  l+V++  r++G+G+ L+e             ++ +g+       +++   ++f + lGF
      CTQ30406.1  36 NHRLYAARFNERLLGAVRVTLRGveGELSDLCVREVTRRRGVGQYLVEEtlrdnpainswrVAdQGV-------EDRgVMAAFMQALGF 117
                     78899999999*******999998777777*****************96444444322221002222.......111222446666666 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   2.5e-06    0.0073      15      45 ..      54      84 ..      43      89 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.5e-06
                EEEE-TTSSEEEEEE-GGG-SSSHHHHHHHH CS
        FR47 15 wilrkdggelgalqvlpehrrrGlgsrlvka 45
                  lr   gel+ l+v++  rrrG g+ lv++
  CTQ30406.1 54 VTLRGVEGELSDLCVREVTRRRGVGQYLVEE 84
                4566667*********************987 PP

>> Lsm_C  Lsm C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0038        11      32      44 ..      50      62 ..      47      63 .. 0.88
   2 ?    6.3   0.0    0.0027       8.2      32      49 ..      93     110 ..      91     115 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0038
                TTEEEETTEEE-- CS
       Lsm_C 32 drikVsekGVeGs 44
                + ++V+ +GVeG+
  CTQ30406.1 50 GAVRVTLRGVEGE 62
                679*********5 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0027
                 TTEEEETTEEE--SHHHH CS
       Lsm_C  32 drikVsekGVeGsGplAe 49 
                 ++ +V ++GVe  G +A 
  CTQ30406.1  93 NSWRVADQGVEDRGVMAA 110
                 578*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 962.58
//
Query:       CTQ30407.1  [L=367]
Description: leucine/isoleucine/valine transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-57  196.0   8.1    1.6e-57  195.7   8.1    1.0  1  Peripla_BP_6  Periplasmic binding protein
    3.8e-25   88.7   0.0    7.1e-25   87.8   0.0    1.4  1  ANF_receptor  Receptor family ligand binding region
    7.8e-19   67.9   0.0      1e-18   67.5   0.0    1.1  1  Peripla_BP_5  Periplasmic binding protein domain
     0.0041   16.0   0.0     0.0069   15.2   0.0    1.3  1  Fe-ADH        Iron-containing alcohol dehydrogenase
     0.0093   15.7   0.3      0.088   12.5   0.0    2.3  2  PGM_PMM_I     Phosphoglucomutase/phosphomannomutase, alpha/be


Domain annotation for each model (and alignments):
>> Peripla_BP_6  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.7   8.1   4.5e-61   1.6e-57       2     327 ..      26     346 ..      25     362 .. 0.92

  Alignments for each domain:
  == domain 1  score: 195.7 bits;  conditional E-value: 4.5e-61
                   EEEEEEE-SSSTTHHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TTSHHHHHHHHHHHHHCT--SEEEE-BSHHHHHHHHHHHHHHT-EEEE CS
  Peripla_BP_6   2 ikiGlltplsGpyassgksllagaqaafeeiNaaGGinGrkielverDdaydpdraaeaarrlvdqdgvdalvgplssavaaavaevlakdgvpvig 98 
                   iki++++++sGp+a +g + + ga+ a+++iNa+GGi+G k+++v +Dda dp++a+++a++ v+ dg+++++g l+s+ ++ +++++++ g+++i+
    CTQ30407.1  26 IKIAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSSTQPASDIYEDEGILMIT 121
                   9****************************************************************.******************************* PP

                   SS-HHCC...TTSTTEEESS--HHHHHHHHHHHHHHHTTSCEEEEEEESSHHHHHHHHHHHHHHHCCTEEEEEEEEE-TTHHHHHHHHHHHHTTT-S CS
  Peripla_BP_6  99 pagltge...kcspyvfslgpsysaqasalveylakelggkkvalvyadyafgregiaalkaaakaaGgevvgeepvplgttdfsaqvlqikaagad 192
                   pa++++e    ++  + ++++ +s+q+ ++++y++++++  ++a+v +  ++g  +++a+++ +k+ G +vv    +++g+ dfs++v+++k+++ d
    CTQ30407.1 122 PAATAPEltaRGYKLILRTTGLDSDQGPTAAKYILDKVKPQRIAVVHDKQQYGEGLARAVQDGLKKGGANVVFFDGITAGEKDFSTLVARLKKENID 218
                   **9998644477888********************************************************************************** PP

                   EEEEESSHHHHHHHHHHHHHTT-SSSCEEEECCC.-CHHHHHHHHHHHHTTEEEEESCSTCCCSHHHHHHHHHHHHHHTTGGC--HHHHHHHHHHHH CS
  Peripla_BP_6 193 avllagtgadlaallkaaaeaGldakrillvsws.gseedlkalggeaaegvlavtpyfpdldnpavrafvaayeaayggapppsqfaaggyiaadl 288
                   +v+ +g+ + + ++l++a++aGl+    +++++  +++ +l  ++ge+aeg+l++ p  +d + pa++ +v+a++a+  +  p  +f + +y+a++ 
    CTQ30407.1 219 FVYYGGYHPEMGQILRQARAAGLKT---QFMGPEgVANVSLSNIAGESAEGLLVTKPKNYD-QVPANKPIVDAIKAKKQD--PSGAFVWTTYAALQS 309
                   ************************4...577777477777*****************6666.58*********9887333..5689*********** PP

                   HHHHHHCCTHCCHHHHHHHHHHS-BECCCTCCBEECTTS CS
  Peripla_BP_6 289 llealkaagsltreavraaleslgfdgllgplkftaedh 327
                   l ++l +  s +++++++ l++ ++d+++gpl+++++  
    CTQ30407.1 310 LQAGLNQ--SDDPAEIAKYLKGATVDTVMGPLSWDQKGD 346
                   *******..55**********************997755 PP

>> ANF_receptor  Receptor family ligand binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0     2e-28   7.1e-25       5     354 .]      48     361 ..      44     361 .. 0.87

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 2e-28
                   HHHHHHHHHHT-TTSSTTEEEEEEEEE-TT-HHHHHHHHHHHCCCCEEEEEE-SSHHHHHHHHHHHCCTT-EEEESS---GGGG-TTTTTTEEESS- CS
  ANF_receptor   5 AmklAveeinsdpnllpgiklgyeiidtccdfslaleaaldflkgkvvaviGpssssvsdavaslanlfkiPvisygstspelsdknryptflrtvp 101
                    ++ Av +in+++++ ++ kl++   d++cd+++a+++a++ +++ ++ viG  +ss++ +++ + +   i +i++++t+pel+  + y+ +lrt+ 
    CTQ30407.1  48 GAEQAVADINAKGGIKGN-KLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTA-RGYKLILRTTG 142
                   6789********888887.*************************77************************************999.56799****** PP

                   -CHHHHHHHHH.HHHHTT--EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEST.CHHHCHHHHHHHHHHTTT--EEEEEE-HHHHHHHHHHH CS
  ANF_receptor 102 sdtsqaqAivd.ilkhfgWkkvaliysdddygesglqaleeeleergicvalkekipe.ssnddevvrkllkeikskarvivlfcssedarellkaa 196
                    d+ q+   ++ il + + +++a++++++ yge+++ a+++ l++ g +v++ + i+  +++++ +v++l+   k++ + ++   +++++ ++l++a
    CTQ30407.1 143 LDSDQGPTAAKyILDKVKPQRIAVVHDKQQYGEGLARAVQDGLKKGGANVVFFDGITAgEKDFSTLVARLK---KENIDFVYYGGYHPEMGQILRQA 236
                   ******988883556******************************************77777777777776...5699******************* PP

                   HHTTS-STTEEEEETCHCCCECTTS-CC..HHHHHTT-EEEEE.....--B-HHHHHHHHHST--CCCSSSTCCGSTTCCHHHHH...HHHHHHHHH CS
  ANF_receptor 197 rrlgltgeeyvwiasdawtsslvldkpeltgleaaegvlgfrl.....kdpnspkfsefldkreklsdekqnyenegkeqisyqaalmYdaVyllae 288
                   r +gl +   ++++ +++++ + ++       e aeg+l+ +      +++n+p ++ +           +     ++ +  ++++++Y a   l  
    CTQ30407.1 237 RAAGLKT---QFMGPEGVANVSLSNIA----GESAEGLLVTKPknydqVPANKPIVDAIK----------AK----KQDPSGAFVWTTYAALQSLQA 312
                   ******9...7**99999998888844....46799999999944444444444444444..........22....222334678888999999999 PP

                   HHHHHHCHHSSSHCCB-HHHHCCHHHHHHHHHHHT-EEEETTSCEEB-TTSBBE.-EEEEEEEECTC CS
  ANF_receptor 289 AlnkllrkkkpgralscntlkpweggqkllrylrnvnfeGltGdvkfdengdrv.ptydilnlqgsg 354
                   +ln+                    + + + +yl+  + + ++G ++ d++gd++ + + ++ ++ +g
    CTQ30407.1 313 GLNQSD------------------DPAEIAKYLKGATVDTVMGPLSWDQKGDLKgFEFGVFTWHANG 361
                   988887..................7789999********************************9875 PP

>> Peripla_BP_5  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   2.8e-22     1e-18       1     323 [.      26     343 ..      26     362 .. 0.90

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 2.8e-22
  Peripla_BP_5   1 ikvGvLhSlsGtmaisekslkdaallaieeinaagGvlgrkieavvvdpasdwelfaekaeklieedkvevvfGcwtSasRkavlpvveelnalLfY 97 
                   ik+ v+  +sG +a    +   +a  a+++ina+gG++g+k++ v +d a d+++  + a+k+++ d+++ v+G   S+s +   +++e++  l++ 
    CTQ30407.1  26 IKIAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSSTQPASDIYEDEGILMIT 121
                   899***********************************************************997.******************************* PP

  Peripla_BP_5  98 pvqYEGeEss...knviYtGaapnqqaipavdyllselgakrvflvGsdyvypretnrilkallkakggevvgeeYlplgssdvqkivakikkakpd 191
                   p     e +    k ++ t     +q   a++y+l++   +r+++v     y    +r +++ lk+ g +vv  + ++ g++d++++va++kk + d
    CTQ30407.1 122 PAATAPELTArgyKLILRTTGLDSDQGPTAAKYILDKVKPQRIAVVHDKQQYGEGLARAVQDGLKKGGANVVFFDGITAGEKDFSTLVARLKKENID 218
                   *9876554441124688899999999999******************************************************************** PP

  Peripla_BP_5 192 vvlstinGdsnvafykelkeagikaekipvvslsvaeeelaaidaealvGhlaaw..nYfqsvdtpenkafvakfkarvgedrvtndpmeaayiqvk 286
                   +v+      ++ ++ ++ ++ag+k + +      va+  l++i  e+++G l +   nY q    p+nk +v++ ka+ ++     + + ++y +++
    CTQ30407.1 219 FVYYGGYHPEMGQILRQARAAGLKTQFMG--PEGVANVSLSNIAGESAEGLLVTKpkNYDQ---VPANKPIVDAIKAKKQD--PSGAFVWTTYAALQ 308
                   ***9999999999**********998764..56789999999999*****99875214543...5999*****99987655..66788889999999 PP

  Peripla_BP_5 287 lwaqAvekagstdvekvreallgqelkapeGevkidp 323
                    +++ +++  s+d++++ + l g ++++  G+++ d+
    CTQ30407.1 309 SLQAGLNQ--SDDPAEIAKYLKGATVDTVMGPLSWDQ 343
                   99988876..789999999999999999999988776 PP

>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.9e-06    0.0069      16      85 ..     154     220 ..     147     223 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.9e-06
                 HHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EE CS
      Fe-ADH  16 ellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvv 85 
                 + l+k + +r+ +v+dk+ +  +gl++ v++ l++ g +v+ fdg++    +++   ++a++++e++d+v
  CTQ30407.1 154 YILDKVKPQRIAVVHDKQQY-GEGLARAVQDGLKKGGANVVFFDGITA--GEKDFSTLVARLKKENIDFV 220
                 3455555679********98.*************************54..55678889999999999998 PP

>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.14   5.1e+02      61      90 ..      18      47 ..      12      62 .. 0.80
   2 !   12.5   0.0   2.5e-05     0.088      30      75 ..     151     196 ..     146     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.14
                HHHHHCCT-CEEEEEEB-HHHHHHHHHHCC CS
   PGM_PMM_I 61 aaglaanGvevillgllptPavsfairklk 90
                 + ++a++++  ++g ++ P++++  +++ 
  CTQ30407.1 18 SSAALAEDIKIAVVGAMSGPVAQYGDQEFT 47
                5678999**************999877755 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2.5e-05
                 HHHHCHHCSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE CS
   PGM_PMM_I  30 iaeylkaeakkkkvvvGrDtRvssrelaealaaglaanGvevillg 75 
                 +a+y+  + k ++++v +D   +++ la+a+  gl + G++v++++
  CTQ30407.1 151 AAKYILDKVKPQRIAVVHDKQQYGEGLARAVQDGLKKGGANVVFFD 196
                 678888888999*******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2644.42
//
Query:       CTQ30408.1  [L=414]
Description: Tyrosine-specific transport protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-32  111.7  27.7    6.3e-32  111.1  27.7    1.2  1  Trp_Tyr_perm  Tryptophan/tyrosine permease family
    2.3e-09   36.5  26.5    1.9e-08   33.4  17.9    2.9  2  Aa_trans      Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Trp_Tyr_perm  Tryptophan/tyrosine permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1  27.7     7e-36   6.3e-32       2     393 ..      23     397 ..      22     398 .. 0.88

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 7e-36
  Trp_Tyr_perm   2 tksllggvlliagtviGaGmlalPvatagagfipsllllilswvlmlasgllllEvllaakeeasfttlakkllGkkgniivalvllfllyiLlvAy 98 
                   + s++ gv++i gt iGaG+l++  a+++agf+p l+ l+l+  l +++ l+++E  l ++++  +++l+k+++G  g +++ l++++ +   l Ay
    CTQ30408.1  23 SLSFVEGVSMIVGTNIGAGVLSIAYASSKAGFLPLLFWLVLVGSLTTVTMLYVAESTLRTRKHLQLSGLSKRYVGGFGALMMFLSVCVNSVGALTAY 119
                   56899**************************************************************************************99**** PP

  Trp_Tyr_perm  99 isggGsilselleeasgialsarlavliftlvlgalvvlstkavdrinrvllflklvafvlllalllskvksd..vLlsaksdtskvslvlsalPvl 193
                   ++g+G++l++l+       +s+ l  ++f++ ++ ++ l+ ka+ r  +++ ++++v++ +l+   l k  +    Ll+      ++ ++++ + v+
    CTQ30408.1 120 MTGSGKLLHSLFG------ISPALGSVLFFVPAAGVLYLGLKAIGRGEKFISIGMVVMISVLVIATLLKETTRvgYLLD-----GNWLYMVPVFNVV 205
                   *********9765......456999**********************************99888777765554116888.....4688888888888 PP

  Trp_Tyr_perm 194 llsfGFhgivpslvkyldknvkkvkkailiGtliaLvlyllWelivlGnlpreelariiakggnldtlveallelleskslelavelFsflAlatSf 290
                      f  + ivp +     ++ +k+ kai++G +++ +l  l  l+v   ++ + l +i + +        +  ++l ++++ +  +lF+  A++tS+
    CTQ30408.1 206 AFCFSAQYIVPEMARGFADKPEKLPKAIMVGMALTFTLLALVPLSV---ISLNGLDNISDVA------TISWGRALGEWAFFS-ANLFALCAMLTSY 292
                   8888889************************999988876666555...5677787776555......446677788887766.59*********** PP

  Trp_Tyr_perm 291 lGvalglfdyladlfkl..sdskkgrlklglvtflpPlvlalffPegflkalgyAGlaatilavilPallawkarkkkknap.yrvlgGnkllllvl 384
                    G + +++  + d f+l  +++ ++rl + lv+ +pP vla      f+ al +AG+   +++ i+P+l+ + ar++   +p +  ++  ++  l+ 
    CTQ30408.1 293 WGLGGSFLTNIFDQFRLgnDEQPARRLMVLLVVAIPPFVLAYSGMVSFVNALYFAGVFSGVILSIMPILMLKGARQRGDLTPgW-TCPAWMTHPLIQ 388
                   *****************87778899****************************************************9999955.556666666666 PP

  Trp_Tyr_perm 385 ligivlilv 393
                    + ++l+l+
    CTQ30408.1 389 CFIVLLYLC 397
                   666666665 PP

>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4  17.9   2.1e-12   1.9e-08       3     245 ..      24     247 ..      22     251 .. 0.73
   2 !    6.8   1.4   0.00027       2.4      76     161 ..     270     358 ..     255     410 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 2.1e-12
    Aa_trans   3 ssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvsy 101
                  s++++v  ++ + +GaGvL+++yA +++G ++ l+ l+lv+ l+  t+l  ++      + +++ + + l +r+ G+ g l++ l+ +v+ +G+ ++y
  CTQ30408.1  24 LSFVEGVSMIVGTNIGAGVLSIAYASSKAGFLPLLFWLVLVGSLTTVTMLYVAESTL---RTRKHLQLSGLSKRYVGGFGALMMFLSVCVNSVGALTAY 119
                 68999*************************************998888877777765...368999999999*************************** PP

    Aa_trans 102 liligdllpaifesffdtlllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkasklkglflaigi 200
                 +   g+ll ++f+       l +v f++ +a ++ +   ++ +    ++  ++ v+++      vlv+a+l+k+  + v++     + +   ++  + +
  CTQ30408.1 120 MTGSGKLLHSLFGIS---PALGSVLFFVPAAGVLYL--GLKAIGRGEKFISIGMVVMI-----SVLVIATLLKE-TTRVGYLL---DGNWLYMVPVFNV 204
                 *************73...233333333333222222..44444444444333333332.....23333333333.33333332...2333344455567 PP

    Aa_trans 201 ivFAftghavlleiqnelkd.pskfkkmtkvlllsiilatvlyilv 245
                 ++F+f+ + +++e+     d p+k +   k++ + ++l+++l +lv
  CTQ30408.1 205 VAFCFSAQYIVPEMARGFADkPEKLP---KAIMVGMALTFTLLALV 247
                 8*****************99788877...89999999999998876 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00027
    Aa_trans  76 rllGpkgkliidlailvqlfGvgvsyliligdllpaifesffdt...lllsnvyfilisaliiipLs...lipnlskLsylSllalvsslyy 161
                 r+lG++   ++  a l+ l+ + +sy  l g+ l +if++f       + +++++ l++a+  ++L+   ++   ++L ++ +++ v++ ++
  CTQ30408.1 270 RALGEW---AFFSANLFALCAMLTSYWGLGGSFLTNIFDQFRLGndeQPARRLMVLLVVAIPPFVLAysgMVSFVNALYFAGVFSGVILSIM 358
                 566665...7777889999999******************8733467888888888888888777764445555555555555555554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3043.01
//
Query:       CTQ30409.1  [L=421]
Description: 4-aminobutyrate aminotransferase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.3e-130  434.0   0.0   4.8e-130  433.9   0.0    1.0  1  Aminotran_3    Aminotransferase class-III
    0.00014   21.1   0.0     0.0017   17.6   0.0    2.0  2  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.9   0.0  5.4e-134  4.8e-130       9     406 .]      21     419 ..      13     419 .. 0.96

  Alignments for each domain:
  == domain 1  score: 433.9 bits;  conditional E-value: 5.4e-134
                  SC.EEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHHHHHCT-..S...EEEEESSHHHHHHH CS
  Aminotran_3   9 ll.lvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekllklapkgld...kvflansGseAvet 102
                  +  ++++kae++ l+d +g++++D++++iav+n+Gh+hPkvv+av+eq+++++h+ ++++ +e+++ lae +++lap   d   k+ ++++G+eAve+
   CTQ30409.1  21 MCnYFVEKAENATLWDIEGNEVIDFAAGIAVLNTGHRHPKVVAAVAEQLQAFTHTAYQIVPYESYVSLAERINDLAPI--DgpaKTAFFTTGAEAVEN 116
                  44599************************************************************************9..6668************** PP

                  HHHHHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-S CS
  Aminotran_3 103 AlKlarkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEp 200
                  A+K+ar+      +t ++ +i+f g+fHGrt++++++tg+ ++yk +fgpf+  v++  yp   +  + +++ ++l+++++a  + + d+vaA+i+Ep
   CTQ30409.1 117 AVKIARA------YTGRPGLITFGGGFHGRTFMTMALTGKVAPYKIGFGPFPGSVYHGVYPNAAHGVTTADALKSLERIFKA--DIAPDQVAAIILEP 206
                  *******......9***********************************************999998888888888888888..889*********** PP

                  CETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HHHH CS
  Aminotran_3 201 iqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnplac 298
                  iqgegG++va+++f+++lr+lc+ h++lli+DEvqtGf+rTGklfA++h++v+pDlmt+aK+l+gG+pls v+++aevm+a apg+ g+T++Gnpla 
   CTQ30409.1 207 IQGEGGFNVAPADFMQALRDLCDTHGILLIADEVQTGFARTGKLFAMQHYEVKPDLMTMAKSLAGGFPLSGVVGRAEVMDAPAPGGLGGTYAGNPLAV 304
                  ************************************************************************************************** PP

                  HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-TTEEEEEEETTEEEEEEBCCCETTC.....HHHHHHHHHCTEE-EEETT..TEEEE---TT CS
  Aminotran_3 299 avalavleiieeekllenaqelgaalkegLeelqkkyevikevRgkGlmiaielkeeaevke.....keilkkakekGvlilsaGd..nvirllppli 389
                  a+a+avl++i+ee+l+++a++lg+ l+e L+++ +    i +vRg+G m+a+e+ ++++ ++     + + +ka+e+G+l+ls+G   nvir+l pl+
   CTQ30409.1 305 AAAHAVLDVIAEEQLCQRAEQLGSHLQEVLNQARATCPAIVDVRGRGSMVAVEFNDPQTGEPspeftRLVQQKAQENGLLLLSCGVygNVIRFLYPLT 402
                  ************************************9**********************88899998668899************999********** PP

                  --HHHHHHHHHHHHHHH CS
  Aminotran_3 390 itdeeidelleilkkal 406
                  i d++  ++l+il ++l
   CTQ30409.1 403 IPDAQFSKALDILARVL 419
                  ************99876 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.015   1.3e+02       2      87 ..      41     121 ..      40     131 .. 0.76
   2 !   17.6   0.0   1.9e-07    0.0017     164     311 ..     215     358 ..     180     400 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.015
                    EEEESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHH CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifl 87 
                    +vi+++++     +g+  +++va  + +  + ++t+ ++ p++ + +l e++ +++         + ++  +++Ga a+ +a++ +
     CTQ30409.1  41 EVIDFAAGIAVLNTGHRHPKVVAAVAEQLQAFTHTAYQIVPYESYVSLAERINDLAP-----IDGPAKTAFFTTGAEAVENAVKIA 121
                    689999998888888856665555555546778899999999999999999999999.....444555999999999988887655 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.9e-07
                    B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS.SHHHHH CS
  Aminotran_1_2 164 vatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpfls.ssllqa 258
                    va+ +  ++l dl++ +++ll+ De+  gf+ + + ++ ++ +v+++     + sl+  f l G     ++g a+v ++ +    ++++  ++l+ 
     CTQ30409.1 215 VAPADFMQALRDLCDTHGILLIADEVQTGFARTGKLFAMQHYEVKPDLM-TMAKSLAGGFPLSG-----VVGRAEVMDAPAPGGLGGTYaGNPLAV 304
                    678889999************************9988777999999887.88888888888889.....999999999999998888887999999 PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS..TEEEECCSCSSEEEEE CS
  Aminotran_1_2 259 avaaalsdallkqseleemrqrlqkrrkelrdeLael..glkvlasqsgmflltd 311
                    a+a a+ d+  + ++l +++++l ++ +e+ ++ ++    +  +   + m+ +  
     CTQ30409.1 305 AAAHAVLDVIAE-EQLCQRAEQLGSHLQEVLNQARATcpAIVDVRGRGSMVAVEF 358
                    999999999964.477777777777777666654444554444444455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3134.75
//
Query:       CTQ30410.1  [L=507]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-22   78.5   0.0    7.3e-22   78.0   0.0    1.1  1  Aminotran_1_2  Aminotransferase class I and II
    7.9e-16   57.5   0.1    2.3e-15   56.0   0.1    1.9  1  GntR           Bacterial regulatory proteins, gntR family
     0.0096   16.3   0.0      0.024   15.0   0.0    1.6  1  Rrf2           Transcriptional regulator
  ------ inclusion threshold ------
      0.024   14.6   0.0      0.066   13.2   0.0    1.7  1  HTH_11         HTH domain
      0.029   13.9   0.0        0.1   12.1   0.0    1.9  2  HTH_24         Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.0     2e-25   7.3e-22      25     340 ..     151     455 ..     138     481 .. 0.86

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 2e-25
                    HHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEE CS
  Aminotran_1_2  25 kaekegalaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvry 120
                    +a +     ++++ +y+ + g pel++al ++l+ s ++  + + +++ + G +++i++++++l ++ gd  +v +p+y  + ++l ++++   + 
     CTQ30410.1 151 QARIS-RRPKPERLSYSCNGGTPELQQALVDYLRVSRGVHCQSD-QILITEGIHQAIDLVTRML-CDNGDLAWVEEPSYWGIRHVLAMNDVRAEPL 243
                    44444.67788999********************9999999999.*******************.8************************999998 PP

                    EBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEE CS
  Aminotran_1_2 121 plyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnlliv 216
                             +d+++l+      + +++++ ++++ s + P G+v++le  + ll+la++++ +++ D+  ++f f  +   a+  +v+++p  +  
     CTQ30410.1 244 T--------VDANGLCP---PETVDDAPRLIFVTPSHQYPLGAVMSLERRQRLLALARQQGSWIVEDDYDSEFRFSGQPIPALQGLVADAPV-VYI 327
                    8........99999997...3344555778999999999************************************98765555677777666.*** PP

                    EESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS....TEEEECCSCSS CS
  Aminotran_1_2 217 gslsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael....glkvlasqsgm 306
                    g++sK +  +G+R+Gy+++   +vs l+ +++ ++    sl q a+a+ + + + +  ++  mr  + +rr +l++ +++      l+ ++ ++g+
     CTQ30410.1 328 GTFSKTL-YPGLRLGYVVIPRPLVSDLKHAHAELYRggHSLIQMALAEFITAGH-YSAHIRRMRLLYSRRRAFLTELIQRHcmpyALSDFSDNAGL 421
                    *****98.8***************************977777777777777766.888********************9999*999999******* PP

                    EEEEEETHH.CHHHHHHHHHHTCTEEEEEGGGGTS CS
  Aminotran_1_2 307 flltdlsae.takelskkLleevgvyvtpgtsftv 340
                     l+  l+ae ++ +++++   + +++v+p + +++
     CTQ30410.1 422 HLILNLPAEaDDVAIAREANAR-HILVRPLSRYYL 455
                    *********5555555555555.999999887766 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.1   6.5e-19   2.3e-15       3      64 .]      23      84 ..      21      84 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 6.5e-19
                HHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  3 eqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                +++y +Lr+ Il+g l+p ++LP+ r+La e+gVsr+t+   + +L aeg+v++r+g+GtfV
  CTQ30410.1 23 KRLYNALRRAILDGSLAPQSRLPPSRDLAGELGVSRNTILTTYEQLLAEGYVVSRRGSGTFV 84
                789**********************************************************9 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.8e-06     0.024      19      65 ..      38      83 ..      24      94 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.8e-06
                HSSTCC-B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT-TCE CS
        Rrf2 19 keeeeepvsseeiaerqnispsylekilakLrkaglvksvrGkgGGy 65
                + ++++   s+++a + ++s++ +    ++L  +g+v s+rG  G +
  CTQ30410.1 38 LAPQSRLPPSRDLAGELGVSRNTILTTYEQLLAEGYVVSRRGS-GTF 83
                5666777899********************************9.444 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.8e-05     0.066      19      53 ..      48      81 ..      42      83 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.8e-05
      HTH_11 19 eeLAeeLnvSrrtvrrdIkaLeelgvpIesepgrG 53
                 +LA eL+vSr t+    ++L + g  ++s++g+G
  CTQ30410.1 48 RDLAGELGVSRNTILTTYEQLLAEG-YVVSRRGSG 81
                68***********************.999999988 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.9e-05       0.1      21      47 ..      48      74 ..      45      75 .. 0.95
   2 ?   -2.4   0.0         1   3.7e+03      23      41 ..     370     388 ..     363     389 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.9e-05
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGlI 47
                r+LA +lg+S++t+++  ++L  eG++
  CTQ30410.1 48 RDLAGELGVSRNTILTTYEQLLAEGYV 74
                8*************************9 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1
      HTH_24  23 LAerlglSpstvnrrlkrL 41 
                  A +  ++ +  +++++r+
  CTQ30410.1 370 MALAEFITAGHYSAHIRRM 388
                 55566688888999**998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3860.76
//
Query:       CTQ30411.1  [L=284]
Description: RNA polymerase, sigma 32 (sigma H) factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-19   66.6   1.2    7.1e-17   60.7   0.3    2.5  2  Sigma70_r4       Sigma-70, region 4
    1.1e-16   60.4   0.0      2e-16   59.5   0.0    1.5  1  Sigma70_r2       Sigma-70 region 2
    0.00018   21.4   0.2     0.0005   20.0   0.2    1.7  1  Sigma70_r1_2     Sigma-70 factor, region 1.2
     0.0011   19.2   0.6       0.42   10.9   0.2    2.5  2  KORA             TrfB plasmid transcriptional repressor
     0.0039   16.9   0.0       0.19   11.6   0.0    2.8  2  HTH_10           HTH DNA binding domain
     0.0074   16.4   2.4        4.1    7.6   0.5    2.9  2  Sigma70_r3       Sigma-70 region 3
  ------ inclusion threshold ------
      0.021   14.7   0.9       0.54   10.2   0.1    2.7  2  HTH_25           Helix-turn-helix domain
      0.022   14.6   1.8       0.39   10.6   0.1    2.7  3  HTH_AsnC-type    AsnC-type helix-turn-helix domain
      0.027   14.0   0.0        1.3    8.7   0.0    2.6  2  GerE             Bacterial regulatory proteins, luxR family
       0.03   14.3   0.6       0.29   11.1   0.0    2.6  2  UCR_14kD         Ubiquinol-cytochrome C reductase complex 14k
      0.055   13.5   0.5       0.41   10.7   0.0    2.4  2  HTH_3            Helix-turn-helix
      0.068   13.4   0.1       0.15   12.2   0.1    1.6  1  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
      0.075   13.4   1.0          3    8.3   0.2    2.6  2  HTH_31           Helix-turn-helix domain
      0.078   12.8   0.1        3.2    7.7   0.1    2.7  2  HTH_23           Homeodomain-like domain
       0.11   12.5   3.2         11    6.2   0.5    3.3  2  ENT              ENT domain
       0.13   12.2   0.1       0.24   11.2   0.1    1.4  1  DUF5412          Family of unknown function (DUF5412)
       0.13   12.0   0.1        5.4    6.9   0.0    2.6  2  MerR             MerR family regulatory protein
       0.16   11.9   0.0       0.58   10.0   0.0    1.9  2  2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
       0.44   10.2   3.0        1.6    8.4   0.0    2.8  3  GntR             Bacterial regulatory proteins, gntR family
          1    9.2   6.4          8    6.4   0.0    3.9  5  IF2_N            Translation initiation factor IF-2, N-termin


Domain annotation for each model (and alignments):
>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.032        29      24      43 ..     155     174 ..     144     177 .. 0.88
   2 !   60.7   0.3   7.9e-20   7.1e-17       1      50 []     228     280 ..     228     280 .. 0.98

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.032
                 HHHHHHHTS-HHHHHHHHHH CS
  Sigma70_r4  24 eEIgerlgiSrerVrqiekr 43 
                 e ++++lg+S   Vr  e+r
  CTQ30411.1 155 EMVARELGVSSKDVREMESR 174
                 669************99987 PP

  == domain 2  score: 60.7 bits;  conditional E-value: 7.9e-20
                 HHHHS-HHHHHHHHHHH...TTT--HHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Sigma70_r4   1 aLasLpererevlelrf...geglTleEIgerlgiSrerVrqiekrAlrkLRk 50 
                 a++ L+er +++++ r+   + + Tl+E+++r+g+S erVrq+ek+A++kLR+
  CTQ30411.1 228 AMQGLDERSQDIIRARWldeDNKSTLQELADRYGVSAERVRQLEKNAMKKLRA 280
                 89******************99******************************5 PP

>> Sigma70_r2  Sigma-70 region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   2.3e-19     2e-16       1      70 [.      53     122 ..      53     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 2.3e-19
                 HHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHHGGGTSTTTCHHHHHHHHHHHHHHHHHHHHTSST CS
  Sigma70_r2   1 lverylplvkrlarrllgsgadaeDlvQeaflrlwraverfdpergvsfsawllriarnaaidrlRkrrr 70 
                 l+ ++l++v+++ar++ g g+   Dl+Qe++++l++av+rf+pe gv++ ++++ +++ ++  ++ +++r
  CTQ30411.1  53 LILSHLRFVVHIARNYSGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWR 122
                 6789***************************************************************998 PP

>> Sigma70_r1_2  Sigma-70 factor, region 1.2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   5.6e-07    0.0005       4      27 ..      17      40 ..      16      43 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5.6e-07
                  HHHHHHHHHSX--THHHHHHHHHH CS
  Sigma70_r1_2  4 rlYLrEIGriPLLtaeEEveLAkr 27
                  + Y+r  +  P+L+a+EE+eLA++
    CTQ30411.1 17 ESYIRAANTWPMLSADEERELAEK 40
                  6899999***************97 PP

>> KORA  TrfB plasmid transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.017        16      36      56 ..     156     176 ..     150     185 .. 0.85
   2 !   10.9   0.2   0.00046      0.42       9      58 ..     225     277 ..     218     283 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.017
        KORA  36 dvatelgltkqavsqavkrvw 56 
                  va+elg++ + v +++ r  
  CTQ30411.1 156 MVARELGVSSKDVREMESRMA 176
                 689**************9975 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00046
        KORA   9 iikgleelaeqtveiargvLVegkkqa...dvatelgltkqavsqavkrvwaa 58 
                 +  +++ l e+   i+r    ++ +++   ++a++ g++ ++v q++k++++ 
  CTQ30411.1 225 LTDAMQGLDERSQDIIRARWLDEDNKStlqELADRYGVSAERVRQLEKNAMKK 277
                 66788999999999999776665555323389******************975 PP

>> HTH_10  HTH DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0       0.2   1.8e+02      26      42 ..     154     170 ..     145     174 .. 0.82
   2 !   11.6   0.0   0.00021      0.19      19      51 ..     246     278 ..     244     280 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.2
      HTH_10  26 lkeLAkelGIskstlse 42 
                 ++ +A elG+s  ++ e
  CTQ30411.1 154 VEMVARELGVSSKDVRE 170
                 6779*******998766 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00021
      HTH_10  19 dyPRrvtlkeLAkelGIskstlsehLrkaeskl 51 
                 d++ + tl+eLA++ G+s+  + +  ++a++kl
  CTQ30411.1 246 DEDNKSTLQELADRYGVSAERVRQLEKNAMKKL 278
                 778899*******************99999998 PP

>> Sigma70_r3  Sigma-70 region 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.5    0.0046       4.1      24      62 ..     155     194 ..     153     199 .. 0.81
   2 !    7.2   0.1    0.0059       5.3      22      43 ..     252     273 ..     246     278 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0046
                 HHHHHHHTXXHHHHHHH.HHHHXXXEETTXBSSSSTTXBS CS
  Sigma70_r3  24 eEiAeeLglseekVrev.leaarepvSldlpvgeeedtel 62 
                 e +A eLg+s ++Vre+  ++a +   +d+   +e+d+++
  CTQ30411.1 155 EMVARELGVSSKDVREMeSRMAAQDMTFDMSSDDESDNQP 194
                 679*************944678888888888888888776 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0059
                 XHHHHHHHHTXXHHHHHHHHHH CS
  Sigma70_r3  22 tpeEiAeeLglseekVrevlea 43 
                 t +E+A++ g+s e+Vr++ + 
  CTQ30411.1 252 TLQELADRYGVSAERVRQLEKN 273
                 789**************98665 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.25   2.2e+02      13      34 ..     154     175 ..     150     178 .. 0.87
   2 ?   10.2   0.1    0.0006      0.54       9      41 ..     249     281 ..     247     283 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.25
                 HHHHHHHSS--HHHHHHHHCT- CS
      HTH_25  13 leevaketkIrkdylealEedd 34 
                 +e va+e+ ++ + ++++E+ +
  CTQ30411.1 154 VEMVARELGVSSKDVREMESRM 175
                 799**************99865 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0006
                 TT--HHHHHHHSS--HHHHHHHHCT--TTSS-H CS
      HTH_25   9 rglsleevaketkIrkdylealEeddfdalpep 41 
                  + +l+e+a++  ++++ +++lE++ +++l ++
  CTQ30411.1 249 NKSTLQELADRYGVSAERVRQLEKNAMKKLRAA 281
                 5679************************99875 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       8.7   7.8e+03      21      28 ..      35      42 ..      35      42 .. 0.84
   2 ?    2.5   0.0      0.15   1.3e+02      23      36 ..     157     170 ..     154     170 .. 0.86
   3 ?   10.6   0.1   0.00044      0.39      12      35 ..     245     268 ..     232     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 8.7
  HTH_AsnC-type 21 aeLAervG 28
                   +eLAe+++
     CTQ30411.1 35 RELAEKLH 42
                   69***986 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.15
  HTH_AsnC-type  23 LAervGlSestvlr 36 
                    +A+++G+S   v++
     CTQ30411.1 157 VARELGVSSKDVRE 170
                    7*******999985 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00044
  HTH_AsnC-type  12 LqedaRisyaeLAervGlSestvl 35 
                    L ed + + +eLA+r G+S+++v+
     CTQ30411.1 245 LDEDNKSTLQELADRYGVSAERVR 268
                    789999****************98 PP

>> GerE  Bacterial regulatory proteins, luxR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.13   1.1e+02      20      35 ..     154     169 ..     143     177 .. 0.83
   2 ?    8.7   0.0    0.0014       1.3      20      47 ..     253     280 ..     232     282 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.13
                 HHHHHHHHTS-HHHHH CS
        GerE  20 nkeIAeelniSekTVk 35 
                 ++++A+el++S k V+
  CTQ30411.1 154 VEMVARELGVSSKDVR 169
                 6899********9987 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0014
                 HHHHHHHHTS-HHHHHHHHHHHHHHHT- CS
        GerE  20 nkeIAeelniSekTVkvhksnimkKLnv 47 
                  +e A+++++S++ V+   +n+mkKL++
  CTQ30411.1 253 LQELADRYGVSAERVRQLEKNAMKKLRA 280
                 5799**********************87 PP

>> UCR_14kD  Ubiquinol-cytochrome C reductase complex 14kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00032      0.29      13      49 ..      60      97 ..      49     161 .. 0.90
   2 ?   -2.7   0.1       6.6   5.9e+03      28      51 ..     214     238 ..     212     246 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00032
    UCR_14kD 13 wyanaag.yrklGLrydDllseenedvqeALrrLpeee 49
                ++++ a  y  +GL   Dl++e n  + +A+rr ++e+
  CTQ30411.1 60 FVVHIARnYSGYGLPQADLIQEGNIGLMKAVRRFNPEV 97
                4455554499************************9986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.6
    UCR_14kD  28 dDllsee.nedvqeALrrLpeeeay 51 
                 dD  +e+  ++++ A++ L+e+ ++
  CTQ30411.1 214 DDNWEEQaANKLTDAMQGLDERSQD 238
                 5555555466677777777766554 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.4   1.3e+03      13      22 ..     155     164 ..     150     173 .. 0.73
   2 ?   10.7   0.0   0.00046      0.41      11      32 ..     252     273 ..     246     282 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.4
                 HHHHHHHTSS CS
       HTH_3  13 eeLAeklGvs 22 
                 e++A++lGvs
  CTQ30411.1 155 EMVARELGVS 164
                 5677778777 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00046
                 HHHHHHHHHTSSHHHHHHHHTT CS
       HTH_3  11 sqeeLAeklGvsrstisriEnG 32 
                 +++eLA++ Gvs   ++++E++
  CTQ30411.1 252 TLQELADRYGVSAERVRQLEKN 273
                 899*****************98 PP

>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00017      0.15      18      72 ..     206     260 ..     195     267 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
  SANT_DAMP1_like  18 eeYeellkeedWtkeetdyLfdlckeydlrfv.viaDryelekkkkrsledlkery 72 
                      ++++  +++++W+++  ++L d ++  d r   +i  r+   +++k +l++l +ry
       CTQ30411.1 206 SNFADGIEDDNWEEQAANKLTDAMQGLDERSQdIIRARWLD-EDNKSTLQELADRY 260
                      567788999********************9754999***77.5899*********9 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.14   1.3e+02      18      36 ..     155     173 ..     139     179 .. 0.88
   2 ?    8.3   0.2    0.0033         3      16      36 ..     252     272 ..     241     281 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.14
      HTH_31  18 eevAerlgvsestlsrlEq 36 
                 e vA+ lgvs   ++ +E+
  CTQ30411.1 155 EMVARELGVSSKDVREMES 173
                 789*******999999886 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0033
      HTH_31  16 sqeevAerlgvsestlsrlEq 36 
                 +++e+A+r gvs+ ++++lE 
  CTQ30411.1 252 TLQELADRYGVSAERVRQLEK 272
                 899****************97 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.23     2e+02      19      30 ..     153     164 ..     140     166 .. 0.87
   2 ?    7.7   0.1    0.0036       3.2      14      40 ..     245     273 ..     235     280 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.23
      HTH_23  19 svreIAreLgvs 30 
                  v+ +AreLgvs
  CTQ30411.1 153 EVEMVARELGVS 164
                 57889******9 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0036
      HTH_23  14 lae..GlsvreIAreLgvsrrTvyrwlkr 40 
                 l+e  + + +e A+++gvs   v++  k 
  CTQ30411.1 245 LDEdnKSTLQELADRYGVSAERVRQLEKN 273
                 455668899***************98775 PP

>> ENT  ENT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.5     0.012        11      21      38 ..      43      77 ..      39     185 .. 0.53
   2 ?    3.5   0.1     0.084        75      25      54 ..     245     274 ..     239     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.012
         ENT 21 aqgdLseekkkllteLr.................k 38
                 qgdL   kk +l++Lr                  
  CTQ30411.1 43 YQGDLEAAKKLILSHLRfvvhiarnysgyglpqaD 77
                68999999999999999444444444444444440 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.084
         ENT  25 LseekkkllteLrkeLsIsterHraelrrv 54 
                 L e+ k+ l+eL     +s er r++ +++
  CTQ30411.1 245 LDEDNKSTLQELADRYGVSAERVRQLEKNA 274
                 788999999*************99998877 PP

>> DUF5412  Family of unknown function (DUF5412)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00027      0.24      69     109 ..     123     165 ..     110     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
     DUF5412  69 lvnk.ktkkkkniYwnyreedakieWldektvvIngkkLnv.k 109
                 +v++ +tk ++++++n r+++ ++ W +++ v +  ++L v  
  CTQ30411.1 123 IVKVaTTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVsS 165
                 4555488999************************999999944 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.16   1.4e+02       5      20 ..     157     172 ..     154     174 .. 0.80
   2 ?    6.9   0.0     0.006       5.4       3      21 ..     254     272 ..     252     273 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.16
                 HHHHHTTTHHHHHHHH CS
        MerR   5 vAeltGvsprtLRyYE 20 
                 vA+ +Gvs++ +R  E
  CTQ30411.1 157 VARELGVSSKDVREME 172
                 9*******99887655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.006
                 HHHHHHHTTTHHHHHHHHH CS
        MerR   3 gevAeltGvsprtLRyYEr 21 
                  e+A++ Gvs+  +R +E+
  CTQ30411.1 254 QELADRYGVSAERVRQLEK 272
                 69**************997 PP

>> 2Fe-2S_thioredx  Thioredoxin-like [2Fe-2S] ferredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00064      0.58      10      51 ..     130     171 ..     122     173 .. 0.86
   2 ?   -1.9   0.0         3   2.7e+03      31      49 ..     250     268 ..     219     271 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00064
                      -GGGGHHHHHHHHHHHHSS--HHHHHHHHHHHTS-HHHHHHH CS
  2Fe-2S_thioredx  10 ekrsaliplLklvQeeegwlpeealeevaellgvppaevyev 51 
                      + +++l   L++++++ gw +++ +e+va++lgv+  +v+e+
       CTQ30411.1 130 KAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVSSKDVREM 171
                      566677778999999***********************9986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3
                      HHHHHHHHHHHTS-HHHHH CS
  2Fe-2S_thioredx  31 eealeevaellgvppaevy 49 
                      +++l+e+a++ gv++ +v+
       CTQ30411.1 250 KSTLQELADRYGVSAERVR 268
                      4578888888888888876 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       2.9   2.6e+03      27      35 ..      34      42 ..      33      43 .. 0.84
   2 ?    0.9   0.1      0.41   3.7e+02      28      49 ..     155     176 ..     153     180 .. 0.77
   3 ?    8.4   0.0    0.0018       1.6      26      43 ..     252     269 ..     236     281 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.9
                HHHHHHHHT CS
        GntR 27 ereLaaefg 35
                ereLa++++
  CTQ30411.1 34 ERELAEKLH 42
                9****9985 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.41
                 HHHHHHHTS-HHHHHHHHHHHH CS
        GntR  28 reLaaefgVsrttvReALrrLe 49 
                 + +a e+gVs   vRe  +r +
  CTQ30411.1 155 EMVARELGVSSKDVREMESRMA 176
                 66799**********9655555 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0018
                 -HHHHHHHHTS-HHHHHH CS
        GntR  26 sereLaaefgVsrttvRe 43 
                 + +eLa+++gVs+  vR+
  CTQ30411.1 252 TLQELADRYGVSAERVRQ 269
                 789**********99996 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.9   2.6e+03       8      14 ..      36      42 ..      29      54 .. 0.71
   2 ?   -2.6   0.0       5.6     5e+03      14      31 ..      72      87 ..      71      89 .. 0.77
   3 ?    6.4   0.0    0.0089         8       8      20 ..     156     168 ..     153     171 .. 0.86
   4 ?   -1.6   0.0       2.8   2.5e+03      44      51 ..     222     229 ..     218     241 .. 0.57
   5 ?    3.8   0.1     0.055        49       3      20 ..     250     267 ..     248     282 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.9
       IF2_N  8 eLAkeLg 14
                eLA++L+
  CTQ30411.1 36 ELAEKLH 42
                6666665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.6
       IF2_N 14 gvkskevikkLfkelGie 31
                g++ +++i++  +  G +
  CTQ30411.1 72 GLPQADLIQEG-N-IGLM 87
                78899999987.6.7777 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0089
       IF2_N   8 eLAkeLgvkskev 20 
                  +A+eLgv+sk+v
  CTQ30411.1 156 MVARELGVSSKDV 168
                 58**********8 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 2.8
       IF2_N  44 aeliaeef 51 
                 a+++ +++
  CTQ30411.1 222 ANKLTDAM 229
                 55555444 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.055
       IF2_N   3 kirVyeLAkeLgvkskev 20 
                 k + +eLA++ gv++++v
  CTQ30411.1 250 KSTLQELADRYGVSAERV 267
                 56899*********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       911  (0.0508115); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2122.90
//
Query:       CTQ30412.1  [L=356]
Description: transporter subunit: membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-16   58.7   0.0    1.1e-15   58.0   0.0    1.3  1  FtsX_ECD       FtsX extracellular domain
    0.00013   22.4   3.9    0.00013   22.4   3.9    3.0  3  FtsX           FtsX-like permease family
  ------ inclusion threshold ------
       0.21   12.0   9.3        2.2    8.7   7.1    2.5  2  Peptidase_A24  Type IV leader peptidase family
          2    8.7   4.8         11    6.3   0.2    2.5  2  DUF3951        Protein of unknown function (DUF3951)


Domain annotation for each model (and alignments):
>> FtsX_ECD  FtsX extracellular domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   2.4e-19   1.1e-15       2      96 .]     114     208 ..     113     208 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 2.4e-19
    FtsX_ECD   2 evsvflkddateeqiealeeklealpgVksvtfvskeealeefkeqlgednsellegltedeNpLpdsfevklkdp....ekleevaeelkklpgVeeV 96 
                 +++v+l+++++++ ++ +  +l+a++gV++v++ s++eal ef++  g  +  +l++l+  eNpLp++ +v +k +    e l+++ +++ +++gV+eV
  CTQ30412.1 114 QITVYLEKTLDDDAAARVVGQLQAEQGVDKVNYLSRDEALGEFRNWSG--FGGALDMLE--ENPLPAVAIVVPKLDfqstEALNTLRDRVTRIQGVDEV 208
                 9***********************************************..999****54..5**********99999999******************9 PP

>> FtsX  FtsX-like permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2      0.13   5.8e+02      65      90 ..      75     100 ..      71     118 .. 0.80
   2 ?   -0.8   1.0       0.5   2.2e+03      33      54 ..     227     247 ..     215     254 .. 0.52
   3 !   22.4   3.9   2.8e-08   0.00013       2      92 ..     257     346 ..     256     350 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.13
        FtsX  65 dlitvliiivlllllallagllsisk 90 
                 +l t+l+++v+++ l+l ++ + ++k
  CTQ30412.1  75 PLATFLTVMVIAISLTLPSVCYMVYK 100
                 67788888888888888877666665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.5
        FtsX  33 lviGlglgllaaqllsdvllss 54 
                  v++  +g+l+  +++ v+++s
  CTQ30412.1 227 RVSA-MIGVLMVAAVFLVIGNS 247
                 4444.33444444444444444 PP

  == domain 3  score: 22.4 bits;  conditional E-value: 2.8e-08
        FtsX   2 reigilralGmkkkqvlllllteillitlvalviGlglgllaaqllsdvllssvfsselkisidlitvliiivlllllallagllsiskil 92 
                   i + + +G++++ +l+ +l+ ++++++ +++++l+l+ ++   ls+ + ++   + +++ ++++ + +++++l++ ++++g+++++ ++
  CTQ30412.1 257 DTINVQKLIGATDGFILRPFLYGGAMLGFSGAFLSLILSEILVMRLSSAVTEVAKVFGTQFELSGLGFDECLLMLIV-CSMIGWVAAWLAT 346
                 57999*********************************************999999**************9887665.56667****9987 PP

>> Peptidase_A24  Type IV leader peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.043   1.9e+02       9      36 ..      65      92 ..      62     113 .. 0.74
   2 ?    8.7   7.1   0.00049       2.2      42      96 ..     223     347 ..     214     350 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.043
  Peptidase_A24  9 vlsviDldtrtlpdeltlpllllgvlfa 36
                    ++++Dl++  l  +lt++++ +++++ 
     CTQ30412.1 65 HGALQDLKSTPLATFLTVMVIAISLTLP 92
                   5788999999999999999888887665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00049
  Peptidase_A24  42 glpnlaqavlgalvgalvllli......................................................................slvd 67 
                    gl+   +a++g+l++a+v+l+i                                                                      + + 
     CTQ30412.1 223 GLVGRVSAMIGVLMVAAVFLVIgnsvrlsifarrdtinvqkligatdgfilrpflyggamlgfsgaflslilseilvmrlssavtevakvfgTQFE 318
                    56666789*****************************************99999999999999999888888887777777666666655444446 PP

  Peptidase_A24  68 eqamGgGDvklaavlgaflgwerlllavl 96 
                    + ++G+  + l++++  ++gw +  la++
     CTQ30412.1 319 LSGLGFDECLLMLIVCSMIGWVAAWLATV 347
                    67*******************99888876 PP

>> DUF3951  Protein of unknown function (DUF3951)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.7     0.019        84      10      45 ..      82     117 ..      76     122 .. 0.83
   2 ?    6.3   0.2    0.0025        11       5      34 ..     231     260 ..     228     262 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.019
     DUF3951  10 lltlvilviIgfvayklFvkkesidiyYTPfdsiTg 45 
                 ++ ++i++ +  v y+++ +  s  + Y P  +iT+
  CTQ30412.1  82 VMVIAISLTLPSVCYMVYKNVSSAASQYYPSPQITV 117
                 4568888888899*************999*****98 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0025
     DUF3951   5 tiGillltlvilviIgfvayklFvkkesid 34 
                  iG+l++++v lvi   v   +F  +++i+
  CTQ30412.1 231 MIGVLMVAAVFLVIGNSVRLSIFARRDTIN 260
                 69******9999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2805.89
//
Query:       CTQ30413.1  [L=222]
Description: transporter subunit: ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-37  127.8   0.0    5.3e-37  127.4   0.0    1.1  1  ABC_tran     ABC transporter
    1.6e-06   28.2   0.0     0.0084   15.9   0.0    2.1  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    2.5e-05   23.9   0.0    5.6e-05   22.8   0.0    1.5  1  AAA_29       P-loop containing region of AAA domain
     0.0003   20.8   0.0    0.00053   19.9   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
    0.00071   20.0   0.1    0.00091   19.7   0.1    1.4  1  AAA_16       AAA ATPase domain
     0.0047   17.4   0.1     0.0071   16.9   0.1    1.2  1  AAA_23       AAA domain
  ------ inclusion threshold ------
      0.011   15.4   0.2       0.25   10.9   0.1    2.3  2  AAA_25       AAA domain
       0.05   13.3   0.1      0.083   12.6   0.1    1.3  1  AAA_30       AAA domain
      0.058   13.5   0.0      0.077   13.1   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
      0.077   13.3   0.3       0.19   12.0   0.1    1.7  2  AAA_22       AAA domain
      0.088   13.0   0.0       0.38   10.9   0.1    1.8  2  AAA_33       AAA domain
       0.14   12.1   0.0       0.26   11.2   0.0    1.4  1  NTPase_1     NTPase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   0.0   3.5e-40   5.3e-37       1     136 [.      18     165 ..      18     166 .. 0.96

  Alignments for each domain:
  == domain 1  score: 127.4 bits;  conditional E-value: 3.5e-40
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren.............esde 83 
                 l+ v+++l++ge+  ++G++GaGKStLlkl++g ++p +G+i + g+++++   +e ++lr++ig+++q+++l  + tv++n             + ++
  CTQ30413.1  18 LQGVTFHLQPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIFFSGHEISRlksREVPFLRRQIGMIFQDHHLLMDRTVYDNvaipliiagasgdDIRR 116
                 689************************************************999999**********************************99998999 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++++al+k+gl +++++       +LSgG++qrv +ara+++kp +ll+DEpt
  CTQ30413.1 117 RVSAALDKVGLLDKAKNFP----IQLSGGEQQRVGIARAVVNKPAVLLADEPT 165
                 9************777776....*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00023      0.34       2      22 ..      31      51 ..      30      99 .. 0.68
   2 !   15.9   0.0   5.7e-06    0.0084     256     303 .]     154     201 ..     111     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
      AAA_21  2 nvliGpNgsGKSnLLdaldll 22
                ++l+G  g+GKS+LL+++ ++
  CTQ30413.1 31 AFLTGHSGAGKSTLLKLICGI 51
                689***************443 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 5.7e-06
      AAA_21 256 kkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                  k+++ll DEp  +L+ +l + +l+l++e +r g+ v+++TH+  l++
  CTQ30413.1 154 NKPAVLLADEPTGNLDEALSEGILRLFEEFNRVGVTVLMATHDLGLIS 201
                 4559***************************************99985 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.8e-08   5.6e-05      12      39 ..      18      45 ..      15      52 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3.8e-08
      AAA_29 12 fdghtieidlkgatlltGpsGsGKSTll 39
                ++g t+++++ ++ +ltG+sG+GKSTll
  CTQ30413.1 18 LQGVTFHLQPGEMAFLTGHSGAGKSTLL 45
                567899999999***************8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.6e-07   0.00053      88     122 ..      16      51 ..       6      65 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 3.6e-07
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                  ++l+ ++ +l+  ++++l G+SG+GKStL++ + + 
   CTQ30413.1  16 QALQGVTFHLQPgEMAFLTGHSGAGKSTLLKLICGI 51 
                  567778888988899***************999875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   6.1e-07   0.00091      24      70 ..      27      77 ..      15     197 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.1e-07
      AAA_16 24 p.elvllsGesGvGKsslvrellralekd..ggiflrgkcdql..esaipys 70
                p e+ +l+G+sG GKs+l++ +   +e+   g if++g+  +   ++++p++
  CTQ30413.1 27 PgEMAFLTGHSGAGKSTLLKLIC-GIERPsaGKIFFSGHEISRlkSREVPFL 77
                44899****************99.5666656567777777776666667773 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   4.8e-06    0.0071      10      40 ..      18      49 ..      11      51 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.8e-06
      AAA_23 10 frdqeidFsk.gltlItGpNGaGKTTildAik 40
                ++++++++ +  +  +tG+ GaGK+T+l  i+
  CTQ30413.1 18 LQGVTFHLQPgEMAFLTGHSGAGKSTLLKLIC 49
                577888887735999**************999 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00017      0.25      29      50 ..      24      45 ..      15      50 .. 0.89
   2 ?    1.9   0.0     0.098   1.5e+02      82     103 ..     110     146 ..     103     191 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
      AAA_25 29 llpagelallaGapgtGKttla 50
                +l  ge a l+G++g+GK+tl+
  CTQ30413.1 24 HLQPGEMAFLTGHSGAGKSTLL 45
                67889***************97 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.098
      AAA_25  82 sedelrrRlravgeal...............rddarl 103
                 s d++rrR++a++ ++                +++r+
  CTQ30413.1 110 SGDDIRRRVSAALDKVglldkaknfpiqlsgGEQQRV 146
                 5789*********999777655555555554333444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   5.6e-05     0.083      13      39 ..      23      49 ..      12      63 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.6e-05
      AAA_30 13 lltsgdrvavltGpAGtGKttalkalr 39
                ++ ++  +a+ltG  G+GK+t+lk + 
  CTQ30413.1 23 FHLQPGEMAFLTGHSGAGKSTLLKLIC 49
                45566779***************9875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.2e-05     0.077       3      28 ..      32      58 ..      30     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.2e-05
                EEEESTTSSHHHHHHHHHTS.TEEESS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge.kaivsd 28
                 + G++ +GKStL++ ++g  +  +++
  CTQ30413.1 32 FLTGHSGAGKSTLLKLICGIeRPSAGK 58
                579***************943444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00013      0.19       6      24 ..      29      47 ..      25      52 .. 0.88
   2 ?   -1.8   0.0       2.4   3.6e+03      92      99 ..     156     163 ..      98     195 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
      AAA_22  6 gilvvtGesGtGKTtllrr 24
                 + ++tG+sG+GK+tll+ 
  CTQ30413.1 29 EMAFLTGHSGAGKSTLLKL 47
                5789************986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.4
      AAA_22  92 ielliiDE 99 
                 +++l+ DE
  CTQ30413.1 156 PAVLLADE 163
                 23444444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00025      0.38       2      19 ..      31      48 ..      30      73 .. 0.90
   2 ?   -0.3   0.0      0.73   1.1e+03      31      96 ..     112     184 ..      95     197 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00025
      AAA_33  2 vllvGlpGsGKstlaerl 19
                 +l G++G+GKstl++ +
  CTQ30413.1 31 AFLTGHSGAGKSTLLKLI 48
                5789**********9865 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.73
      AAA_33  31 dtlrrrlfg......tdqqsktdytrvldrlyqilnelarkalsagrnvildat..nlsrrerarflklarrlg 96 
                 d++rrr+ +        ++ k+ +++++    q++ ++ar +  + + +++d +  nl+++  + +l+l+++++
  CTQ30413.1 112 DDIRRRVSAaldkvgLLDKAKNFPIQLSGGEQQRV-GIARAVVNKPAVLLADEPtgNLDEALSEGILRLFEEFN 184
                 66666666655444434445556666777777777.78877777777777777766888888888888888776 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017      0.26       3      20 ..      32      49 ..      30      58 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
                EEE--TTSSHHHHHHHHH CS
    NTPase_1  3 fiTGppGvGKtTlvkkvl 20
                f+TG++G GK+Tl+k ++
  CTQ30413.1 32 FLTGHSGAGKSTLLKLIC 49
                8*************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1830.59
//
Query:       CTQ30414.1  [L=507]
Description: fused Signal Recognition Particle (SRP) receptor: membrane binding protein; conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-79  263.8   1.9    1.3e-78  263.1   1.9    1.4  1  SRP54            SRP54-type protein, GTPase domain
    7.3e-14   51.8   2.0    7.9e-14   51.6   0.4    2.0  1  SRP54_N          SRP54-type protein, helical bundle domain
    1.3e-07   31.1   0.1    2.4e-07   30.2   0.1    1.4  1  Zeta_toxin       Zeta toxin
    1.1e-05   25.2   0.8    2.5e-05   24.1   0.8    1.5  1  AAA_30           AAA domain
     0.0001   22.6   0.2    0.00055   20.2   0.2    2.2  1  AAA_22           AAA domain
    0.00011   22.6   0.2    0.00037   20.9   0.2    1.9  1  AAA_17           AAA domain
     0.0007   20.1   0.1     0.0026   18.3   0.0    2.0  2  ABC_tran         ABC transporter
    0.00075   19.4   0.0     0.0017   18.2   0.0    1.6  1  APS_kinase       Adenylylsulphate kinase
     0.0013   19.2   0.1     0.0013   19.2   0.1    2.5  1  AAA_16           AAA ATPase domain
     0.0016   18.5   0.2     0.0083   16.2   0.2    2.3  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
     0.0017   18.5   0.1     0.0017   18.5   0.1    2.2  2  AAA_33           AAA domain
     0.0046   16.9   0.2      0.008   16.1   0.2    1.4  1  AAA_31           AAA domain
     0.0055   16.0   0.2     0.0084   15.4   0.2    1.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0068   16.8   0.1      0.015   15.7   0.1    1.6  1  AAA              ATPase family associated with various cellul
     0.0087   15.8   0.4      0.033   13.9   0.1    2.1  2  Thymidylate_kin  Thymidylate kinase
  ------ inclusion threshold ------
      0.013   15.2   0.1       0.47   10.1   0.1    2.4  2  AAA_24           AAA domain
      0.015   14.3   0.5      0.034   13.1   0.5    1.7  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.015   15.3   0.0      0.027   14.5   0.0    1.4  1  AAA_14           AAA domain
      0.048   13.6   1.3       0.64    9.9   0.3    2.4  2  NTPase_1         NTPase
      0.069   13.2   0.5       0.29   11.2   0.5    2.1  1  MMR_HSR1         50S ribosome-binding GTPase
      0.078   11.9   0.3       0.21   10.4   0.1    1.7  2  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
      0.092   11.9   0.8       0.25   10.5   0.3    1.9  2  ArsA_ATPase      Anion-transporting ATPase
       0.13   12.2   0.0       0.23   11.5   0.0    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
       0.15   11.8   0.2       0.91    9.3   0.1    2.1  2  ATP_bind_1       Conserved hypothetical ATP binding protein
       0.21   11.1   0.1       0.38   10.2   0.1    1.3  1  AAA_7            P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.1   1.9   1.9e-81   1.3e-78       1     195 [.     303     503 ..     303     504 .. 0.99

  Alignments for each domain:
  == domain 1  score: 263.1 bits;  conditional E-value: 1.9e-81
                 SEEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE--SSTTHH CS
       SRP54   1 pnvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakeavekakeekidvvlvDTaGrlqndk 99 
                 p vil+vG++G+GKTtt++KLa++++++gk+v+l+a DtfRaaAveQL++++++ ++pvi+++++ad+a+v+++a+++ak++++dv++ DTaGrlqn++
  CTQ30414.1 303 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARHVDVLIADTAGRLQNKS 401
                 579************************************************************************************************ PP

                 HHHHHHHHHHHHH......SSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEEE-SSSTTGEEE--HHHHHH CS
       SRP54 100 elmeelkkikkvv......kpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfigvGekiedleefdperlvs 192
                 +lmeelkki +v+      +p+ev+l++da+tgq+a++qak F+eavg+tg+ ltklDg+akgG ++s+a+++++Pi++igvGe+iedl++f++ ++++
  CTQ30414.1 402 HLMEELKKIVRVMkkldvdAPHEVMLTIDASTGQNAISQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFNAGDFIE 500
                 *************************************************************************************************** PP

                 HHH CS
       SRP54 193 rll 195
                 +l+
  CTQ30414.1 501 ALF 503
                 997 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.4   1.1e-16   7.9e-14       1      75 []     220     285 ..     217     285 .. 0.87

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.1e-16
                 HHHHHHHHHHHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTSS-HHHHHHHHHHHHH CS
     SRP54_N   1 LgkklnsalkklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekklkpkqqvkkivkdeL 75 
                 Lg+++ s++    +++kid++++ee    lee+Ll aDVgv++++k+i n+ + a + k+l+++++++ ++k+e+
  CTQ30414.1 220 LGSGFISLF----RGKKIDDDLFEE----LEEQLLIADVGVETTRKIITNLTEGASR-KQLRDAEALYGLLKEEM 285
                 445555555....5699********....**********************996655.99*************97 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1   3.3e-10   2.4e-07      10     119 ..     297     409 ..     289     415 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 3.3e-10
  Zeta_toxin  10 ypsqerPklillgGqpGAGKselaellkdelerqgnvvrld.pDdlRelhPeyeeilk..adpkkaseltqkdaselvekllqeaiengyniivegtlr 105
                 ++++++P +il++G  G GK++++ +l++++e+qg+ v l  +D++R+   e  ++    ++    +++t +d+  +   ++q+a  + +++++  t  
  CTQ30414.1 297 NVEGKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAaGDTFRAAAVEQLQVWGqrNNIPVIAQHTGADSASVIFDAIQAAKARHVDVLIADTAG 395
                 57889***************************99988888627******9766666553246678899**************************99999 PP

  Zeta_toxin 106 spdvvkklaealkk 119
                   ++ ++l+e+lkk
  CTQ30414.1 396 RLQNKSHLMEELKK 409
                 99999999999987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.8   3.5e-08   2.5e-05      20     112 ..     305     411 ..     298     420 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 3.5e-08
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgi..eastiakllkrlk...........grarlepgtllivDEagmv..dtk 103
                 v +++G+ G GKtt++++l++ +e++g++v+++A     A+++++ l++  + ++i  + + ++           ++a+ ++ ++li D ag +   ++
  CTQ30414.1 305 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ-LQVwgQRNNIPVIAQHTGadsasvifdaiQAAKARHVDVLIADTAGRLqnKSH 402
                 67899**************************99987666665552.22222333333322222234455556555545566669999999998844445 PP

      AAA_30 104 qlaallkaa 112
                  +++l k++
  CTQ30414.1 403 LMEELKKIV 411
                 566665555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.2   7.7e-07   0.00055       7     117 ..     305     412 ..     299     427 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 7.7e-07
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka.........erlsseellealeqalraravielli 96 
                 +++ +G  G+GKTt++ +l++q++++ k          v l+++ +   ++ + +++l++ + +          +++s  ++    qa++ar+v  +li
  CTQ30414.1 305 VILMVGVNGVGKTTTIGKLARQFEQQGKS---------VMLAAGDT---FRAAAVEQLQVWGQRnnipviaqhTGADSASVIFDAIQAAKARHV-DVLI 390
                 57889******************765333.........33333332...222222222222222223444444445666677666677777777.8*** PP

      AAA_22  97 iDEaqhlr.seealeeLrslln 117
                  D a +l  +  ++eeL++++ 
  CTQ30414.1 391 ADTAGRLQnKSHLMEELKKIVR 412
                 *******665888888888776 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.2   5.2e-07   0.00037       1     110 [.     309     421 ..     309     435 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 5.2e-07
                 EE-TTSSHHHHHHHHHHHH....TEEEEEHHHHHHHHHHTT.TSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHH..HSSEEEEEE-SEEEETTEEEESS CS
      AAA_17   1 lGgPGsGKgtqceklveky....gfthlsaGdllreeakrg.glakardemrklpleekkelqkeaaekiaeea..kkkgvlvdghprikeqagfldgl 92 
                 +G+ G+GK+t + kl++++    +  +l aGd +r+ a ++ +   +r+++    +    +    + ++i+ ++    + ++ d+  r+++++ ++++l
  CTQ30414.1 309 VGVNGVGKTTTIGKLARQFeqqgKSVMLAAGDTFRAAAVEQlQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKarHVDVLIADTAGRLQNKSHLMEEL 407
                 79**************99988878999********9998885444566666655656666666666666655542133557888888888888777777 PP

                 HHHHHHHH..SEEEEEE- CS
      AAA_17  93 pkevleelkpdaiillea 110
                 +k     + + + + ++a
  CTQ30414.1 408 KKI----VRVMKKLDVDA 421
                 753....33333344444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         6   4.3e+03      29      45 ..     275     291 ..     274     303 .. 0.77
   2 !   18.3   0.0   3.6e-06    0.0026      13      91 ..     305     416 ..     294     441 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 6
                 HHHTTSS--SEEEEEET CS
                 xxxxxxxxxxxxxxxxx RF
    ABC_tran  29 kllagllkpteGeilld 45 
                 ++l+gllk ++Geil +
  CTQ30414.1 275 EALYGLLKEEMGEILAK 291
                 5899*********9766 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 3.6e-06
                 EEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG.....B-HHHCCHCEEEE-SS--S-TTSBHHHH.......................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................... RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkpteGeilld.gkdlke.....qeleslrkeigvlpqepqlfpeltvren.......................... 79 
                 ++ +vG nG GK+t +  la++ +++  ++ l  g+ ++       +    r++i v+ q++  ++ + + +                           
  CTQ30414.1 305 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAaGDTFRAaaveqLQVWGQRNNIPVIAQHTGADSASVIFDAiqaakarhvdvliadtagrlqnkshl 403
                 5789********************988888555344333355533677778999*******88888888888877766666666666555555544444 PP

                 .HHHTCHHHHHHH CS
                 .xxxxxxxxxxxx RF
    ABC_tran  80 .esdeeiekalsk 91 
                  e+ ++i ++++k
  CTQ30414.1 404 mEELKKIVRVMKK 416
                 4444444444444 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.4e-06    0.0017       2      49 ..     303     350 ..     302     373 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.4e-06
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT- CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdL 49 
                 ++v+++ G+ g GK+t   +l+++ +++g+sv+l  Gd+ R    ++L
  CTQ30414.1 303 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQL 350
                 789**************************************9877776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   1.8e-06    0.0013      22     132 ..     301     416 ..     281     432 .. 0.53

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.8e-06
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesa.ipysa.laqalareellrqlldeaesaeleawrekleeala.......avpel 111
                  +p ++l +G  GvGK++ + +l+r++e++g  ++ +  d +++a ++ ++ + q   +  +++q   +   ++++   +++++a a       a  + 
  CTQ30414.1 301 KTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAaVEQLQvWGQRN-NIPVIAQHTGA---DSASVIFDAIQAAKArhvdvliADTAG 395
                 444678999*********************655544444444111122122122222.22222222222...222222222222222222221123333 PP

      AAA_16 112 agaeasrllellkrllallsr 132
                 + + +s+l e+lk++++ +++
  CTQ30414.1 396 RLQNKSHLMEELKKIVRVMKK 416
                 444558888888888877666 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   1.2e-05    0.0083       9      67 ..     313     379 ..     305     478 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.2e-05
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCH...HTTEB-HHHH..........CCHCCCHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx..........xxxxxxxxxxxxx RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlai...leglendiep..........dlkrllellealg 67 
                 GvGKTt+  +Lar + ++g+ V l   D+ + ++     + g      +          ++++ + ++ a++
  CTQ30414.1 313 GVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEqlqVWGQ-----RnnipviaqhtGADSASVIFDAIQ 379
                 9*********************999888775553312221111.....123555666773333333333333 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.5       4.3   3.1e+03      93     143 .]      32      81 ..      21      81 .. 0.79
   2 !   18.5   0.1   2.4e-06    0.0017       1      96 [.     305     418 ..     305     436 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.3
      AAA_33  93 rrlgvpvrivvvetdeetlkeRlakRaangddrsevpeealdrqkarferp 143
                 +++ v+++i +vet+ e  + +    a+++d+ +ev+e +++  ka++ +p
  CTQ30414.1  32 EQQAVAEEIPAVETPAEPSAPKADPEAFAEDV-VEVTETVVESEKAHLAEP 81 
                 67778888888888888888888888887665.799999999999987765 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 2.4e-06
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfg.....tdqqskt.dytrvldrlyqilnelarkalsagrnvildat.....nlsr. 82 
                 ++l+vG++G+GK+t + +l+++       + l + dt+r + ++      +++++    ++   +    +++ ++ a ++  +v++  t     n s+ 
  CTQ30414.1 305 VILMVGVNGVGKTTTIGKLARQFEqqgksVMLAAGDTFRAAAVEqlqvwGQRNNIPvIAQHTGADSASVIFDAIQAAKARHVDVLIADTagrlqNKSHl 403
                 89**************99988877777955556667777755543443322222222222333345556778888887888887775554444433333 PP

      AAA_33  83 .rerarflklarrlg 96 
                  +e ++++++ ++l+
  CTQ30414.1 404 mEELKKIVRVMKKLD 418
                 344466666666555 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   1.1e-05     0.008      12      98 ..     313     405 ..     305     428 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-05
      AAA_31  12 GvGKTTtsvnlaaalaklgkkvLlvDlDpQanatt.glgi..ekneiektlyevli.eeknikeaiiktkvenldlipssid..Laeaeielv 98 
                 GvGKTTt  +la  + ++gk v+l   D+  +a++ +l++  ++n+i     ++ + + + i +ai+ +k +++d++ +++   L++ +  + 
  CTQ30414.1 313 GVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVeQLQVwgQRNNIPVIAQHTGAdSASVIFDAIQAAKARHVDVLIADTAgrLQNKSHLME 405
                 9***************************98887773344432344443333333354666777888877778888887766433555554444 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   1.2e-05    0.0084       3     116 ..     305     410 ..     303     427 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.2e-05
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrll 101
                 v+l  Gv G GKt    +l+ +    e++ ++v+l     ++++  e+l+   +++++   ++   +   ++    +a++ ++ +++dv+i D A rl 
  CTQ30414.1 305 VILMVGVNGVGKTTTIGKLARQF---EQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI--FDAIQAAKARHVDVLIADTAGRLQ 398
                 78889*****************9...88999999999999999999999877755555555554444444444..66889******************* PP

     DUF2075 102 tksdqaekqseenql 116
                 +ks+  e+    + +
  CTQ30414.1 399 NKSHLMEEL---KKI 410
                 *88874443...444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.1e-05     0.015       1      95 [.     306     416 ..     306     446 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.1e-05
                 EEEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSS.....................STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTT CS
         AAA   1 vllyGppGtGKTllakavakelg..vefleisgsellsk.....................yvgesekkirelfkeakekakpsilfiDEidalaksrsg 76 
                 +l++G  G+GKT+++  +a++++   + + + + + +                       +  +s++ i + +++ak+     +l+ D + +l +++  
  CTQ30414.1 306 ILMVGVNGVGKTTTIGKLARQFEqqGKSVMLAAGDTFRAaaveqlqvwgqrnnipviaqhTGADSASVIFDAIQAAKARH-VDVLIADTAGRLQNKS-- 401
                 699******************84223344444444442346677766777778888755344444444555555555444.5888888888886666.. PP

                 CCCHHHHHHHHHHHHHHHH CS
         AAA  77 seseeeervvnqLlteldg 95 
                     + ++ ++++++++++
  CTQ30414.1 402 ----HLMEELKKIVRVMKK 416
                 ....333334444444444 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   4.6e-05     0.033       3      29 ..     310     336 ..     309     346 .. 0.92
   2 ?   -2.4   0.0       4.5   3.2e+03     134     180 ..     396     437 ..     387     441 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.6e-05
                      ESTTSSHHHHHHHHHHHHHHTTE.EEE CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegikvvl 29 
                      G++G+GKtt + +l++ ++++g++v+l
       CTQ30414.1 310 GVNGVGKTTTIGKLARQFEQQGKSVML 336
                      9*********************99876 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.5
                      SCCTTSSTTTSHHHHHHHHHHHHHHHHHHHHTTSTEEEEETTS-HHH CS
  Thymidylate_kin 134 Rlakrdeldeeeeeqldflrkvrerylelakederiliidasksiee 180
                      Rl+ +++    +ee +++ r +++ ++  a   e +l+idas   ++
       CTQ30414.1 396 RLQNKSH---LMEELKKIVRVMKK-LDVDA-PHEVMLTIDASTGQNA 437
                      4444444...56666666666666.33333.3788899999876655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.16   1.2e+02      87     119 ..     260     293 ..     248     295 .. 0.79
   2 ?   10.1   0.1   0.00065      0.47       4      78 ..     305     398 ..     302     416 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.16
      AAA_24  87 rqnekaeskedkgdgkG.ygelaeefrrllkklq 119
                 ++   + s++   d+ + yg+l+ee++++l k++
  CTQ30414.1 260 TNLTEGASRKQLRDAEAlYGLLKEEMGEILAKVD 293
                 4455556667788999**************9986 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00065
      AAA_24   4 kiliyGpsgiGKTtlakel......gpkplfi...dtekGlksldadkfpdie...swedfldevvel...................aaeladyktlvi 71 
                  il++G +g+GKTt++ +l      + k +++   dt++   +  + +++      ++                             aa+ ++ ++l+ 
  CTQ30414.1 305 VILMVGVNGVGKTTTIGKLarqfeqQGKSVMLaagDTFR---AAAVEQLQVWGqrnNI---------PviaqhtgadsasvifdaiqAAKARHVDVLIA 391
                 6999***********999977777755555553333333...2222222211122211.........02222233335555566666777777788888 PP

      AAA_24  72 Dtidele 78 
                 Dt++ l 
  CTQ30414.1 392 DTAGRLQ 398
                 8877765 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.5   4.7e-05     0.034      31      66 ..     305     340 ..     283     420 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.7e-05
                 EEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE- CS
        MeaB  31 vvGltGvPGaGkstlvealglelrrrGkrvavlavD 66 
                 v+ + Gv G+Gk t++ +l+ ++ ++Gk v + a D
  CTQ30414.1 305 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 340
                 67789************************9887766 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   3.7e-05     0.027       4      77 ..     305     382 ..     302     428 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.7e-05
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.....kllelileklkeekktylflDEiqevp 77 
                 +++++G+  vGKTt + +l+++   + +s++  + d+ r ++ ++ +     +++ +i ++  + +   +++D iq ++
  CTQ30414.1 305 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQvwgqrNNIPVIAQHT-GADSASVIFDAIQAAK 382
                 68899***************999988888888888888887766555566555666777764.347888*******983 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00089      0.64       2      30 ..     306     334 ..     305     339 .. 0.90
   2 ?    1.9   0.0      0.25   1.8e+02      83     118 ..     372     407 ..     354     438 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00089
                 EEEE--TTSSHHHHHHHHHHHH...GGGE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkv 30 
                 +++ G  GvGKtT + k++++ +++g +v
  CTQ30414.1 306 ILMVGVNGVGKTTTIGKLARQFEQQGKSV 334
                 567899****************9999876 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.25
                 HHHHHHHHHHH.HHH-EEEE---STTGGG-HHHHHHH CS
    NTPase_1  83 elalealrkal.seadviviDEiGkmElkskkfkeav 118
                 +++ +a++ a  ++ dv++ D  G++  ks+ ++e +
  CTQ30414.1 372 SVIFDAIQAAKaRHVDVLIADTAGRLQNKSHLMEE-L 407
                 567788888887999************99987654.3 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5    0.0004      0.29       2      87 ..     306     435 ..     305     457 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0004
                 EEEEESTTSSHHHHHHHHHTS....TEEESSSTTSSSSE.EEEEEE.ETTEE...............................EEEEECGGCSS.HHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge....kaivsdkpgtTrdi.negrvk.lkgke...............................ielvDtpGlie.gase 62 
                 ++ vG   vGK+t i +l ++       v   +g T      ++++ +++ +                               + ++Dt+G ++ +++ 
  CTQ30414.1 306 ILMVGVNGVGKTTTIGKLARQfeqqGKSVMLAAGDTFRAaAVEQLQvWGQ-RnnipviaqhtgadsasvifdaiqaakarhvdVLIADTAGRLQnKSHL 403
                 6789***************8643222244444444444323333333332.13567777777788888888888888888888********76522222 PP

                 HH...HHHHHHHHHHC.T.SEEEEEEETT..T CS
    MMR_HSR1  63 ek...glgkaflalee.a.dlillvvdas..e 87 
                  +   ++ + +++l+  a + ++l +das  +
  CTQ30414.1 404 MEelkKIVRVMKKLDVdApHEVMLTIDAStgQ 435
                 22112333333332223446688888877442 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1    0.0003      0.21      18      47 ..     306     335 ..     289     342 .. 0.88
   2 ?   -1.8   0.0       1.6   1.1e+03      29      56 ..     371     398 ..     361     405 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0003
  TrwB_AAD_bind  18 ilivGttGsGKtqalekllrairargdrai 47 
                    il+vG  G GKt+++ kl r+ +++g+ ++
     CTQ30414.1 306 ILMVGVNGVGKTTTIGKLARQFEQQGKSVM 335
                    799**********************98765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.6
  TrwB_AAD_bind  29 tqalekllrairargdraivlDltGafv 56 
                      ++ + ++a++ar   ++++D+ G + 
     CTQ30414.1 371 ASVIFDAIQAAKARHVDVLIADTAGRLQ 398
                    5677788999999999999***999875 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   0.00035      0.25       3      38 ..     305     340 ..     304     345 .. 0.93
   2 ?   -1.7   0.0       1.8   1.3e+03     120     134 ..     381     395 ..     356     445 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00035
                  EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase   3 vilvgGKGGVGKttvsaatavklsekgkkvllistD 38 
                  vil+ G  GVGKtt    +a +  ++gk+v+l + D
   CTQ30414.1 305 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 340
                  69999*************************997766 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.8
                  HHCSSSSEEEEESBS CS
  ArsA_ATPase 120 vkeeeydvvvlDtaP 134
                   k+++ dv++ Dta 
   CTQ30414.1 381 AKARHVDVLIADTAG 395
                  455566666666652 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00032      0.23       2      41 ..     306     346 ..     305     426 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00032
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedl 41 
                 +l+vG  G+gK++ + +la+ + ++   +++   dt ++  
  CTQ30414.1 306 ILMVGVNGVGKTTTIGKLARQFeQQGKSVMLAAGDTFRAAA 346
                 699*******************7555555555555555554 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1    0.0013      0.91       2      28 ..     309     335 ..     308     350 .. 0.92
   2 ?   -0.2   0.0      0.97     7e+02     112     156 ..     372     418 ..     354     447 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrsva 28 
                 vG+ G+GKtt +g+l+  +e++g+sv 
  CTQ30414.1 309 VGVNGVGKTTTIGKLARQFEQQGKSVM 335
                 89*******************999875 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.97
  ATP_bind_1 112 akiveeLes.efalvvvyLvDsq.rltdptkfisgllsalsamlrle 156
                 + i+++++  + + v v ++D+  rl++ + ++++l   +++m +l+
  CTQ30414.1 372 SVIFDAIQAaKARHVDVLIADTAgRLQNKSHLMEELKKIVRVMKKLD 418
                 44555555555555555555554355555555555554455544433 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00053      0.38      36      61 ..     306     331 ..     297     349 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00053
       AAA_7  36 vllvGptGtGKtviikdllkkldkek 61 
                 +l+vG  G+GKt++i +l ++++++ 
  CTQ30414.1 306 ILMVGVNGVGKTTTIGKLARQFEQQG 331
                 79******************999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1244  (0.0693848); expected 358.6 (0.02)
Passed bias filter:                      721  (0.0402142); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.43
# Mc/sec: 3551.04
//
Query:       CTQ30415.1  [L=198]
Description: putative methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-61  207.2   0.0    1.8e-61  207.0   0.0    1.0  1  Cons_hypoth95    Conserved hypothetical protein 95
    0.00017   21.1   0.0    0.00023   20.8   0.0    1.1  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.014   15.1   0.0        1.7    8.3   0.0    2.1  2  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran
       0.07   12.2   0.0      0.095   11.7   0.0    1.1  1  RrnaAD           Ribosomal RNA adenine dimethylase


Domain annotation for each model (and alignments):
>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.0   0.0   3.9e-65   1.8e-61       1     182 []      12     188 ..      12     188 .. 0.94

  Alignments for each domain:
  == domain 1  score: 207.0 bits;  conditional E-value: 3.9e-65
                    EEXXSCCCTTXEEEXTTXXXXXSSSHHHHHHHHHHHCCCHCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEE CS
  Cons_hypoth95   1 lriigGkakgrkLkvlegkstRPttdrvrealFnilaaeiegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetael 96 
                    +riigG+++grkL v+e++++RPttdrvre+lFn+la+ i +a++LD+faGsGalglEAlSR+a++ +l+e+++ ++++l++nl++lk++    ++
     CTQ30415.1  12 IRIIGGQWRGRKLPVPESPGLRPTTDRVRETLFNWLAPSIVDAHCLDCFAGSGALGLEALSRYAASTTLLEMERGVAQQLQKNLATLKADR--GKV 105
                    7***************************************************************************************885..666 PP

                    EES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHHHHHHTT-EEEEEEEEEEEECCSSS--.-TTEEEEEEEEETTEEEEEEE CS
  Cons_hypoth95  97 kedaleallklakkkeefdivflDPPyakellieevlelleekkllkenalvvvetekekelpespenlelvkekkygettlalyk 182
                    + +++ ++l+++++  + +ivf+DPP++++ll ee+l+lle++++l+++alv+ve+e e+ lp  p+n++l++ek +g++ ++ly+
     CTQ30415.1 106 ITTNTLSFLSQPGT--PHQIVFVDPPFRQGLL-EETLRLLETQGWLADEALVYVESEVENGLPPVPANWQLYREKVAGQVAYRLYQ 188
                    66677777777555..557***********85.**************************************************996 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   5.1e-08   0.00023      25     112 ..      45     135 ..      34     151 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.1e-08
                 HHCHCC.TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTST..TS-EEEEEE---STTTCH CS
         MTS  25 etlpke.lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleeve..ekkfdlivsNPPfhagka 112
                 + l  +  + + lD  +G G+lg+++++++   + tl++ +    +  ++nl++ k++ ++v++++ l+ ++      +++   PPf++g  
  CTQ30415.1  45 NWLAPSiVDAHCLDCFAGSGALGLEALSRYAA-STTLLEMERGVAQQLQKNLATLKADrGKVITTNTLSFLSqpGTPHQIVFVDPPFRQGLL 135
                 555555567789****************9988.799******9999*******99999999999998886662236789999*******974 PP

>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0039        18      21      41 ..      53      73 ..      41      81 .. 0.76
   2 ?    8.3   0.0   0.00038       1.7     149     204 ..      91     147 ..      82     154 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0039
                     -SEEEETT-TTSCCHHCS... CS
  MethyltransfD12 21 gktfvepFaGggaVffeakkq 41
                     + +  + FaG+ga+++ea+++
       CTQ30415.1 53 DAHCLDCFAGSGALGLEALSR 73
                     45789************9764 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00038
                      HHHHHHHHHHH.CCEEEC-CHHHHTT--TTE.EEEE--S-T.S...TS--GGGG.CS CS
  MethyltransfD12 149 elklrseklkn.akiecgdfdavllkakieddivYlDPPYnprqytanytlyetlaf 204
                        k++++   +  k+ + +   +l ++  +++iv++DPP ++     + +l+et ++
       CTQ30415.1  91 LQKNLATLKADrGKVITTNTLSFLSQPGTPHQIVFVDPPFRQGLLEETLRLLETQGW 147
                      44444444444699999999999999999**********998666666666666665 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.1e-05     0.095      34      88 ..      56     113 ..      50     122 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.1e-05
                 EEEES-TTTCCHHH.HHCC-SEEEEE-S-HHHHHHHHCHTT..TCCCEEEE-S-CCGH CS
      RrnaAD  34 vleigpGkGilTee.LakrakqvvvlElderLakllqkkls..kdeklkvvhqDflkf 88 
                  l+  +G G+l  e L  +a + ++lE+ +  a+ lqk+l   k+ + kv+ ++ l f
  CTQ30415.1  56 CLDCFAGSGALGLEaLSRYAASTTLLEMERGVAQQLQKNLAtlKADRGKVITTNTLSF 113
                 588999****9865167788******************9999999999**99999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1585.18
//
Query:       CTQ30416.1  [L=98]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-27   93.5  10.2    9.4e-27   92.8  10.2    1.4  1  DUF1145   Protein of unknown function (DUF1145)
     0.0084   15.3   1.0     0.0091   15.2   1.0    1.0  1  EutH      Ethanolamine utilisation protein, EutH


Domain annotation for each model (and alignments):
>> DUF1145  Protein of unknown function (DUF1145)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8  10.2     1e-30   9.4e-27       1      57 [.       8      64 ..       8      65 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 1e-30
     DUF1145  1 mlinlGKllmlgfWlvlllNLihPfpkplnlllnialgflllmHllqlllfkatlkk 57
                mlinlG+llml++W++lllNL++Pfpkpln+++n+al+f++lmH+lql+l+kat++k
  CTQ30416.1  8 MLINLGRLLMLCVWAFLLLNLFQPFPKPLNIFVNVALIFMILMHGLQLTLLKATQPK 64
                8******************************************************98 PP

>> EutH  Ethanolamine utilisation protein, EutH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.0     1e-06    0.0091     181     257 ..      15      92 ..       5      98 .] 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1e-06
        EutH 181 algLifipekmikgfkvfgkvivalitigLalaivealtgiklipglapi.eealeivgsiaivlaGafplvalitkv 257
                 +l+L +++  ++++f+ f k +++++ + L+++i+ + ++++l++ ++p     l+   +i i++ G f lva+ +k+
  CTQ30416.1  15 LLMLCVWAFLLLNLFQPFPKPLNIFVNVALIFMILMHGLQLTLLKATQPKeAPPLSRFEQIRIFIFGVFELVAWQKKL 92 
                 5677788889**********************************99999834579999**************986664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 760.67
//
Query:       CTQ30417.1  [L=119]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-29  101.4   0.1    4.1e-29  101.3   0.1    1.0  1  DUF2500   Protein of unknown function (DUF2500)


Domain annotation for each model (and alignments):
>> DUF2500  Protein of unknown function (DUF2500)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.1   2.3e-33   4.1e-29       1     109 []       5     116 ..       5     116 .. 0.96

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 2.3e-33
     DUF2500   1 pllfiivialiivlatrqivrqikqeakndaapvltvqaevvdKreevipnr..rqreeieaeestrYyvtfele.sGerielsvsgkeYgalaegdqG 96 
                 pl+f++v+a+i+v+a +++v+q++++++ndaap l+ ++ v +Kre+vi++r  rq++  +a++++rY++ f++e +G ++ ++++  +Y+al  gd+G
  CTQ30417.1   5 PLFFVLVVAVIVVAASFRYVQQRREKQANDAAPLLQKRVIVSNKREKVINDRrsRQQTVTPAGSEMRYEASFRPEnGGLEVVFRLDAPQYHALSVGDRG 103
                 79************************************************7779*********************5556******************** PP

     DUF2500  97 kLtyqGtrflgFe 109
                  L+y+Gt f++F+
  CTQ30417.1 104 MLSYKGTAFVAFT 116
                 ***********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       967  (0.053935); expected 358.6 (0.02)
Passed bias filter:                      784  (0.043728); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 861.42
//
Query:       CTQ30418.1  [L=208]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-41  139.7  24.0    9.8e-41  139.4  24.0    1.1  1  YhhN      YhhN family


Domain annotation for each model (and alignments):
>> YhhN  YhhN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.4  24.0   5.4e-45   9.8e-41       2     183 ..      27     205 ..      26     206 .. 0.99

  Alignments for each domain:
  == domain 1  score: 139.4 bits;  conditional E-value: 5.4e-45
        YhhN   2 rllfKplpvllLlllvlleskeasryrrlilagLlfsavGDvlLlkkkkrsfllGlvaFllaHilYivafleqratstlslllllllllaaavllalll 100
                 r++fKp++++lLlll+++ ++  ++ ++l+lagL++s++GD+l l  +++++++ ++aF+l+H+lY++ f+ ++ t +++++l l+ll+++a+l+a+++
  CTQ30418.1  27 RWVFKPVTLILLLLLAWQ-APMFNAISYLVLAGLCASLLGDALTL-LPRQRVMYAVGAFFLSHLLYTIWFA-SQLTLSFFWPLPLVLLVFGALLMAVIW 122
                 79****************.**************************.*************************.*************************** PP

        YhhN 101 prlgklkipvlvYalvistmvatAlesllslsslaallaalGallFviSDlllainkfvrklpaarllvmitYfaaQllIals 183
                 +rl+++k+pvl+++ + ++mv++A e +++  + +al++++Ga+l+++S +++ +++++r+++a +++  + Yfa+++lI++ 
  CTQ30418.1 123 SRLEEMKMPVLTFIGMTLVMVWLAGELWFARPTNTALSGFAGAALLLLSNAVWLVSHYRRRFRADNAIAAAFYFAGHFLIVRA 205
                 ********************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       978  (0.0545485); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1430.70
//
Query:       CTQ30419.1  [L=736]
Description: zinc, cobalt and lead efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-47  158.9   0.8    3.3e-46  157.1   0.0    2.3  2  E1-E2_ATPase    E1-E2 ATPase
    7.5e-38  130.9   5.7    7.5e-38  130.9   5.7    1.7  2  Hydrolase       haloacid dehalogenase-like hydrolase
    4.1e-12   46.4   0.1    9.6e-12   45.2   0.1    1.6  1  HMA             Heavy-metal-associated domain
    8.3e-08   32.3   3.4    8.1e-06   25.8   1.6    2.6  3  Hydrolase_3     haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
        0.2   12.0   0.9        1.2    9.5   0.2    2.7  2  HAD             haloacid dehalogenase-like hydrolase
       0.57   10.4   3.6        5.9    7.1   0.1    4.0  5  FeS_assembly_P  Iron-sulfur cluster assembly protein


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.1   0.0   1.1e-49   3.3e-46       2     181 .]     237     417 ..     236     417 .. 0.98
   2 ?   -1.6   0.3      0.54   1.6e+03      91     144 ..     665     718 ..     657     731 .. 0.64

  Alignments for each domain:
  == domain 1  score: 157.1 bits;  conditional E-value: 1.1e-49
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTS CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkia 98 
                   l+p+ta ++r+g  e+++ ++l+pGD++++ ag r paDg++++  a++desaLTGEs+pve+++g++v +G++ v+  ++  V+    d+ +++i 
    CTQ30419.1 237 LKPDTAIRLRNGVRETVAQRDLRPGDVIEVAAGGRLPADGQLLSPFASFDESALTGESVPVERQAGERVAAGATSVDRLVQLTVISEPGDSAIDRIL 333
                   67999999***************************************************************************************** PP

                   TTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT CS
  E1-E2_ATPase  99 rlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.eallralallvaaiPcaLplavplalalgarrlakk 181
                   +l+eea+++++p+++++d+++++++p+++++allv+++ +l + s++  +++++l+ll++ +PcaL++ +p a++ g++ +a++
    CTQ30419.1 334 KLIEEAEERRAPIERFIDRFSRIYTPAIMVVALLVAIVPPLFFASAWlPWIYKGLTLLLIGCPCALVISTPAAITSGLAVAARR 417
                   *****************************************9999999*******************************99986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.54
                   TSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSST CS
  E1-E2_ATPase  91 dtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksl 144
                   +++l  +a++++ a+++ +++ +++    +   ++ ++ +l +  ++l +  ++
    CTQ30419.1 665 HNRLTGLAQMISLARATHANIRQNIAMALGLKGIFLVTTLLGLTGLWLAVLADT 718
                   566677788888888888888888777777755555555555555555554444 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.6   7.8e+03     134     156 ..      88     109 ..      33     124 .. 0.59
   2 !  130.9   5.7   2.5e-41   7.5e-38       4     209 ..     436     642 ..     433     643 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.6
                 TEEEEEEESSEHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 134 gievvlltgdnpetaeraanqlG 156
                 ++ +v + gd ++ +e a +q+G
  CTQ30419.1  88 KL-LVNAEGDVRAQVENAVRQAG 109
                 33.45555666666666666666 PP

  == domain 2  score: 130.9 bits;  conditional E-value: 2.5e-41
                 EEEESBTTTBCHHHHHHHHHHHH......CHHHHHHHHHHHHCHHHHHHHHHHHHH..HHHH.HHHHHETTTE..HHHHTHHHHHHHH..HCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxx..xxxxxxxxxxxxx..xxxxxxxxx RF
   Hydrolase   4 vvfDkdGTLttgepsvedvivsa......alalaaaletgsehpigkalvaaakar..sgal.tgfatfigrg..ayaigkpewltal..dippdlgaa 89 
                 v+fDk+GTLt g+p+v+ vi+ a       lalaaa e gs hp+++a+v++a+ r  s++l +g ++++g g  a   g++ ++ a     p + +a+
  CTQ30419.1 436 VAFDKTGTLTVGQPQVTSVIATAevddnaLLALAAAVEQGSSHPLAQAIVREAQRRqlSIPLaSGQRALAGSGieAEVNGSRILICAAskAAPAEHEAQ 534
                 89*********************99999889999999999****************88777789999999999*99999999999999999******** PP

                 HHHHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHH CS
                 xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  90 igsaqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkvaaireL 186
                 i++++s+g+tv+l+     +l+++++ d+  ++++a++av++L++ g++ v+ltgdnp+ a ++a++lG            e  a+ +p +kv a+  L
  CTQ30419.1 535 IQQLESAGQTVVLVmrGETLLGILALRDT--LRDDARQAVNALHQLGVQGVILTGDNPRAAAAIASELG-----------LEFRAGLLPADKVNAVIAL 620
                 **************88669**********..**************************************...........999**************** PP

                 TST.GGGEEEEESSHHHHHHHHHT CS
                 xxx.xxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 187 qgk.peevamVGDgvnDaaalaaA 209
                 +++ p   amVGDg+nDa+a++aA
  CTQ30419.1 621 NADaP--LAMVGDGINDAPAMKAA 642
                 97747..****************9 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.1   3.2e-15   9.6e-12       3      62 .]      54     111 ..      53     111 .. 0.96

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 3.2e-15
         HMA   3 rvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrk.iieaiekagyk 62 
                 +v+gm+Ca+Ca+kve ++  +pgV++v v +at ++ V+ + +    r+ + +a+++agy+
  CTQ30419.1  54 QVDGMDCAACARKVETAVRQVPGVSQVQVLFATEKLLVNAEGDV---RAqVENAVRQAGYT 111
                 69*****************************************9...7779********95 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         2   6.1e+03      19      60 ..     480     521 ..     473     523 .. 0.76
   2 !    5.8   0.0    0.0034        10      15      55 ..     563     603 ..     553     621 .. 0.88
   3 !   25.8   1.6   2.7e-09   8.1e-06     206     255 .]     626     675 ..     609     675 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2
                  HHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEE CS
  Hydrolase_3  19 ktkeaikklkekgikvviATGRslravlpvleelgldlpvia 60 
                   +++++++++ ++  + +A+G    a + +  e++ + ++i+
   CTQ30419.1 480 LAQAIVREAQRRQLSIPLASGQRALAGSGIEAEVNGSRILIC 521
                  567889999999********9888777777777776666666 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0034
                  ---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3  15 kisektkeaikklkekgikvviATGRslravlpvleelgld 55 
                  ++ + +++a++ l++ g++ vi TG ++ra+  ++ elgl+
   CTQ30419.1 563 TLRDDARQAVNALHQLGVQGVILTGDNPRAAAAIASELGLE 603
                  6778999********************************98 PP

  == domain 3  score: 25.8 bits;  conditional E-value: 2.7e-09
                  EEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 206 viafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnnedGVakal 255
                   + +GDg ND + ++aa +g+Amg++++ + + Ad   ++n   G+a+++
   CTQ30419.1 626 LAMVGDGINDAPAMKAATIGIAMGSGTDVALETADAALTHNRLTGLAQMI 675
                  5789*******************************************987 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.2   9.5e+03      41      88 ..     213     260 ..     197     267 .. 0.63
   2 ?    9.5   0.2   0.00041       1.2      85     188 .]     563     640 ..     548     640 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.2
         HAD  41 alfrellrldraglaelleallaglseelaaelerfvaevirpklldp 88 
                  l+ e+l+   a++a++  ++l +l+++ a +l+  v+e ++++ l+p
  CTQ30419.1 213 FLIGERLEGWAASRARQGVSALMALKPDTAIRLRNGVRETVAQRDLRP 260
                 445556666666677777777777777777777777766666664555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00041
         HAD  85 lldpgalellaahraaGdrvvvvSgglrplvepllaelgadevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsD 183
                 +l+ +a+++++a ++ G++ v+++g + + + +++ elg    l         + ++l + +k+ +      al++         d + +  +GD+++D
  CTQ30419.1 563 TLRDDARQAVNALHQLGVQGVILTGDNPRAAAAIASELG----L--------EFRAGLLPADKVNAV----IALNA---------DAP-LAMVGDGIND 635
                 466799*****999*************************....4........345553344433333....66666.........222.6777888888 PP

         HAD 184 lpllr 188
                  p+++
  CTQ30419.1 636 APAMK 640
                 88875 PP

>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1     0.002       5.9      52      74 .]      62      82 ..      55      84 .. 0.78
   2 ?   -1.3   0.0      0.83   2.5e+03      52      63 ..      96     107 ..      94     110 .. 0.85
   3 ?   -3.1   0.0       3.1   9.3e+03      36      60 ..     316     339 ..     313     339 .. 0.79
   4 ?   -2.2   0.0       1.6   4.8e+03      17      35 ..     424     443 ..     423     457 .. 0.80
   5 ?    0.4   0.0      0.24   7.3e+02      51      71 ..     562     582 ..     557     584 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.002
                    HHHHHHHHHHC.STT--EEEEEE CS
  FeS_assembly_P 52 airadaeaalralpgvevveVev 74
                    a ++++e a+r++pg  v +V+v
      CTQ30419.1 62 ACARKVETAVRQVPG--VSQVQV 82
                    55789**********..555554 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.83
                     HHHHHHHHHHC. CS
  FeS_assembly_P  52 airadaeaalra 63 
                     ++ra++e+a+r+
      CTQ30419.1  96 DVRAQVENAVRQ 107
                     689*******94 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.1
                     EEEEE--SSTT-TTHHHHHHHHHHH CS
  FeS_assembly_P  36 Vsvditltypacslaeairadaeaa 60 
                     V++++    p+ s+++ i + +e+a
      CTQ30419.1 316 VQLTVISE-PGDSAIDRILKLIEEA 339
                     67777777.9999999999988876 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.6
                     SSBCCCCT---EEEE-T.-E CS
  FeS_assembly_P  17 gvdlvslglvreidieg.gk 35 
                     g  l +lg vr+++ +  g+
      CTQ30419.1 424 GAALEQLGQVRQVAFDKtGT 443
                     56788999999999887554 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.24
                     HHHHHHHHHHHC.STT--EEE CS
  FeS_assembly_P  51 eairadaeaalralpgvevve 71 
                     + +r+da++a+ al    v+ 
      CTQ30419.1 562 DTLRDDARQAVNALHQLGVQG 582
                     789**********98866665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 5590.79
//
Query:       CTQ30420.1  [L=81]
Description: sulfurtransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-26   89.5   0.0    9.8e-26   89.4   0.0    1.0  1  TusA      Sulfurtransferase TusA
    0.00031   20.6   0.1    0.00038   20.3   0.1    1.4  1  DUF2249   Uncharacterized conserved protein (DUF2249)


Domain annotation for each model (and alignments):
>> TusA  Sulfurtransferase TusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   0.0   1.1e-29   9.8e-26       1      70 []      10      79 ..      10      79 .. 0.99

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 1.1e-29
                EEEEBTT-STTCCHHHHHHHHCCCGCT-EEEEEESSCHHHHHHHHHHHHHTEEEEEEE-GCC-EEEEEEE CS
        TusA  1 ielDlrGlvCPePllklkkalekleegevlevladdpaatediprfakklghelveveeedgeyrivirk 70
                ++lD+ Gl+CPeP+++++k++++++ ge+l ++addpa+t+dip f++ + helv++e e   yr++irk
  CTQ30420.1 10 HTLDALGLRCPEPVMMVRKTVRTMPVGETLLIIADDPATTRDIPGFCRFMEHELVAQETEALPYRYLIRK 79
                79*******************************************************99**********8 PP

>> DUF2249  Uncharacterized conserved protein (DUF2249)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   4.2e-08   0.00038       1      34 [.      11      44 ..      11      79 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4.2e-08
     DUF2249  1 tlDvRelppperhaaIfeafeaLapGetlelvnd 34
                tlD+ +l  pe+  ++ +++++++ Getl++++d
  CTQ30420.1 11 TLDALGLRCPEPVMMVRKTVRTMPVGETLLIIAD 44
                79******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 617.63
//
Query:       CTQ30421.1  [L=221]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-36  124.4  13.0    4.6e-36  124.4  13.0    1.7  2  Vut_1     Putative vitamin uptake transporter
  ------ inclusion threshold ------
       0.32   10.4   3.4       0.45    9.9   3.4    1.4  1  DUF373    Domain of unknown function (DUF373)


Domain annotation for each model (and alignments):
>> Vut_1  Putative vitamin uptake transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.25   2.3e+03      27      47 ..      11      31 ..       7      40 .. 0.57
   2 !  124.4  13.0   5.1e-40   4.6e-36       1     148 [.      43     199 ..      43     201 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.25
       Vut_1 27 rkvvllgflanllalilllla 47
                + +v+l+++  l+++   +l+
  CTQ30421.1 11 KALVWLSLFHLLVITSSNYLV 31
                556666666666555444444 PP

  == domain 2  score: 124.4 bits;  conditional E-value: 5.1e-40
       Vut_1   1 taGvllfpltflitdiisevyGkkaarkvvllgflanllalillllalllpa....ealesvfgltprivlasliaylvsqlldvyvfhrlkkltkgkk 95 
                 t+G++ fp++fl+td++++++G+  ar++++++++++l +   +    ++      +al ++  +++ri++as++ay ++q+ldv+vf+rl+   ++++
  CTQ30421.1  43 TWGAFSFPFIFLATDLTVRIFGAPLARRIIFAVMVPALAISYGISALFYMGEwqgfAALGTFNLFVARIAVASFMAYALGQILDVHVFNRLR---QSRR 138
                 7*************************************99555555555554578999**********************************...8999 PP

       Vut_1  96 lwlrnigStlvsqlvdtlifvtiaflg........eqlleiilsqyliklliall.dtplvy 148
                 +wl++++Stl++++ dt+ f++iaf +        +++ ei+l++y +k+li+++ ++p++ 
  CTQ30421.1 139 WWLAPTASTLFGNISDTVAFFFIAF-WrspdpfmaAHWGEIALVDYSFKVLISIIfFLPMYG 199
                 *************************.77***************************6777664 PP

>> DUF373  Domain of unknown function (DUF373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.4     5e-05      0.45     225     320 ..      72     181 ..      11     202 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 5e-05
      DUF373 225 vvallllligiisgyislesvssasvssglltlilafiygavewlalailtaslgkiideylkreekdiarllllpflvlaiglvlygasaylls.... 319
                 + a+++ +++i +g+++l  + +     + + ++ +f   +  + ++++++++lg+i+d  + ++ ++  r +l+p   + +g++   ++ ++++    
  CTQ30421.1  72 IFAVMVPALAISYGISALFYMGE----WQGFAALGTFNLFVARIAVASFMAYALGQILDVHVFNRLRQSRRWWLAPTASTLFGNISDTVAFFFIAfwrs 166
                 34444445555555444333343....23456667777778899******************99999999****************9999999777888 PP

      DUF373 320 ..............l 320
                               +
  CTQ30421.1 167 pdpfmaahwgeialV 181
                 887777777665541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1766.73
//
Query:       CTQ30422.1  [L=185]
Description: periplasmic protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-31  107.1   1.3      8e-31  106.8   1.3    1.1  1  DcrB      DcrB


Domain annotation for each model (and alignments):
>> DcrB  DcrB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   1.3   4.5e-35     8e-31       3     128 .]      51     181 ..      50     181 .. 0.99

  Alignments for each domain:
  == domain 1  score: 106.8 bits;  conditional E-value: 4.5e-35
                 EEEEETTSEE--.........BEEEEE--BTT-EEEEEEEE---TTS-HHHHHHHHHHHHHHHSTT-EEEEEEEEEET.TEEEEEEEEEEEETTEEEEE CS
        DcrB   3 tltLPagwqDrS.........vnvlvfpdeatgaslvIsRdeleegetleeylerqlkqlrkrlkgfqlleekpatlgaglpaeelevtyrkkgkpvyq 92 
                 ++tLPag+ D+S         ++v+++++   g+++vI++  + ++e+l+ +++r+ +q+r+r++++q++++kp +++ g++ ++l++ +++kg++ ++
  CTQ30422.1  51 SFTLPAGMADQSgklgtqannMHVYSDAT---GQKAVIVIVGDSTNEDLAVLAKRLEDQQRSRDPQLQVVSNKPLEIK-GHTLQQLDSIISAKGQTAWS 145
                 7****************************...**********************************************.******************** PP

                 EEEEE--SSSEEEEEEEE-CCCHHHHHHHHHHHHCT CS
        DcrB  93 lqvlvevprrvLiftltspgefteeqrahweailas 128
                 +++l +v++++L++++t+p+++++++++++e+i+++
  CTQ30422.1 146 SVILGKVDDKLLTLQVTLPADNQQQAQTEAESIINT 181
                 **********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1425.69
//
Query:       CTQ30423.1  [L=406]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-26   90.7  65.3      2e-14   53.3  48.4    2.9  2  MFS_1            Major Facilitator Superfamily
     0.0078   15.1  21.1     0.0063   15.4  16.6    2.1  2  MFS_1_like       MFS_1 like family
  ------ inclusion threshold ------
      0.028   14.3   1.5      0.028   14.3   1.5    4.2  5  Gram_pos_anchor  LPXTG cell wall anchor motif
      0.066   13.1   0.2        0.2   11.6   0.2    1.8  1  DUF4006          Family of unknown function (DUF4006)
       0.92    7.8  19.8     0.0059   15.1   6.4    2.2  2  MFS_3            Transmembrane secretion effector


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3  48.4   5.5e-18     2e-14       3     302 ..      24     306 ..      22     308 .. 0.85
   2 !   50.7  24.6   3.5e-17   1.2e-13       5     182 ..     227     400 ..     226     406 .] 0.87

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 5.5e-18
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllll..fa.....sslwlllvlrv 93 
                 +  f s+l++++ +++lp ++ +  g+s+  +gl+++l +++++++ + +Gr +d +G+++++++gl + +l+ l +ll  ++     +sl ll+++rv
  CTQ30423.1  24 IFNFASYLTIGLPLAVLPGYVHDVMGFSAFWAGLVISLQYFATLLSRPHAGRYADLLGPKKIVVFGLGGCFLSgLSYLLaaWGsgwplISLLLLCLGRV 122
                 66799999999999999988888899***********************************99999999888855555534433444555667****** PP

       MFS_1  94 lqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtg 192
                 + G+g++++ +++  + + ++   + gr+i++ ++ +  ++++g++lg l++s++g +++  ++ +v+l+a++   + lp+ +++ ++   k       
  CTQ30423.1 123 ILGIGQSFAGTGSTLWGVGVVGSLHIGRVISWNGIVTYGAMAMGAPLGVLCYSHIGLSGLAGVIMAVALVAIL---CALPRAAVKAAKG--KA------ 210
                 ***********************************************************99999999999988...6776655555554..23...... PP

       MFS_1 193 paplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalgl 291
                      + ++a+l +   w + +al+l+++gf  + t+++l+  +  g++g    +  l l+++++++++ll+   ++rlg    l++a+l++++ a+gl
  CTQ30423.1 211 ----MS-FRAVLGRV--WPYGMALALASAGFGVIATFITLF-YDAKGWDG-AAFA--LTLFSCAFVGARLLFPNAINRLGG---LNVAMLCFSVEAIGL 295
                 ....35.89999999..96666666666799999******8.*******7.4444..5555555556699********997...*************** PP

       MFS_1 292 allavtssavl 302
                 +l+++++++++
  CTQ30423.1 296 LLVGFADTPMM 306
                 ******98876 PP

  == domain 2  score: 50.7 bits;  conditional E-value: 3.5e-17
       MFS_1   5 aflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlgaga 101
                 ++l+++++++++++++ +  ++ g++++++   ltl++ +++ a l++   ++r+G   v +l++ + a+g lll+ f +  + +  ++ +l+G+g ++
  CTQ30423.1 227 LALASAGFGVIATFIT-LFYDAKGWDGAAFA--LTLFSCAFVGARLLFPNAINRLGGLNVAMLCFSVEAIG-LLLVgF-ADTPmMAKIGTFLTGAGFSL 320
                 5678889999999999.67788899998865..5999**********************************.555559.89998999************ PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrk 182
                 +fpa ++++++ +p+ ++g+a++ +++++ l+  +  +l+gll+++ g + +++++a++ + a++l++ l  ++p++++ +
  CTQ30423.1 321 VFPALGVVAVKAVPQHNQGSALATYTVFMDLSLGVSGPLAGLLMAWTGISMIYLAAAGLVMAALLLGWRLKKRPPVSEP-E 400
                 *********************************************************9999998874444444444333.3 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.023        82      29      70 ..      48      88 ..      19     110 .. 0.76
   2 !   15.4  16.6   1.8e-06    0.0063     148     373 ..     149     363 ..     143     375 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.023
  MFS_1_like 29 kglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvil 70
                 g++a   g++ ++  + ++ls+p  g  aD +g +k vv +
  CTQ30423.1 48 MGFSAFWAGLVISLQYFATLLSRPHAGRYADLLGPKKIVV-F 88
                4777777888999999999999999999999888665544.4 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.8e-06
  MFS_1_like 148 Grqrlf.GsvGyaifafitGilidhysvnllpysallyvlaallvisllvvlilnetekesklkvtkslqvllnilknpeviifllvalilgmswgiie 245
                 Gr++ + G v y+ +a+   + +  ys+  +++s l+ v++a+ ++++l+ + +    k+ k k +    ++ ++l   +v+   +++++  + +g+i 
  CTQ30423.1 149 GRVISWnGIVTYGAMAMGAPLGVLCYSH--IGLSGLAGVIMAVALVAILC-ALPRAAVKAAKGKAM----SFRAVL--GRVWPYGMALALASAGFGVIA 238
                 7777775556777766655554444444..56788999999999999999.444444445555555....344555..45677777778888999**** PP

  MFS_1_like 246 nFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapk 344
                 +F++l+++ +g  +     +++  ++    l+f   + +++lG  ++ ++++++ ++ +ll+++ + + ++ +  +L g+ f l++ a+  ++ k++p+
  CTQ30423.1 239 TFITLFYDAKGWDGAAFALTLFSCAFVGARLLF--PNAINRLGGLNVAMLCFSVEAIGLLLVGFADTPMMAKIGTFLTGAGFSLVFPALGVVAVKAVPQ 335
                 **************9999888777666666655..6779************************************************************ PP

  MFS_1_like 345 sleatgqgllsgly.fglGralGsliGGll 373
                 + ++   + ++ ++  +lG  +G l+G ll
  CTQ30423.1 336 HNQGSALATYTVFMdLSLG-VSGPLAG-LL 363
                 ********99987524554.3444444.44 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   2.0       1.2   4.2e+03      22      33 ..     181     192 ..     175     198 .. 0.55
   2 ?   -3.9   2.0       4.1   1.5e+04      27      33 ..     228     234 ..     224     241 .. 0.44
   3 ?   -0.3   0.2      0.29     1e+03      12      27 ..     314     329 ..     313     330 .. 0.85
   4 ?   -3.2   0.3       2.5   8.9e+03      21      28 ..     358     365 ..     356     365 .. 0.80
   5 ?   14.3   1.5   7.9e-06     0.028      12      39 ..     367     393 ..     367     393 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
                      XXXXXXXXXXXX CS
  Gram_pos_anchor  22 aaGllallggll 33 
                       ++  +++++l+
       CTQ30423.1 181 GLAGVIMAVALV 192
                      344444444443 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4.1
                      XXXXXXX CS
  Gram_pos_anchor  27 allggll 33 
                      al+++++
       CTQ30423.1 228 ALASAGF 234
                      2222222 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.29
                      XXXXXXXXXXXXXXXX CS
  Gram_pos_anchor  12 TGengnifltaaGlla 27 
                      TG+  +++++a+G+ a
       CTQ30423.1 314 TGAGFSLVFPALGVVA 329
                      8999999******877 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 2.5
                      XXXXXXXX CS
  Gram_pos_anchor  21 taaGllal 28 
                      ++aGll++
       CTQ30423.1 358 PLAGLLMA 365
                      68999985 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 7.9e-06
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor  12 TGengnifltaaGllallggllLlvkrR 39 
                      TG  ++i+l aaGl ++++ l++++k+R
       CTQ30423.1 367 TG-ISMIYLAAAGLVMAALLLGWRLKKR 393
                      88.99******************99998 PP

>> DUF4006  Family of unknown function (DUF4006)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   5.7e-05       0.2      10      43 ..     178     210 ..     175     215 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.7e-05
     DUF4006  10 glnGitGmliavvLLLsilavLtvlaikvqqaea 43 
                 gl+G+ G + av+L  +il  L  +a+k+ + +a
  CTQ30423.1 178 GLSGLAGVIMAVAL-VAILCALPRAAVKAAKGKA 210
                 89*********996.79***********998877 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   5.4      0.13   4.8e+02     342     402 ..     149     205 ..      13     233 .. 0.76
   2 ?   15.1   6.4   1.6e-06    0.0059     286     394 ..     283     391 ..     252     403 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.13
       MFS_3 342 gRalavYltvlaGglaaGsllWGavaealsvtlaLlaaaaalllaaaillllklpeleasd 402
                 gR+++    v++G++a G+ l G++  +   ++ L   a  ++++a++ +l++lp+   ++
  CTQ30423.1 149 GRVISWNGIVTYGAMAMGAPL-GVLCYS---HIGLSGLAGVIMAVALVAILCALPRAAVKA 205
                 788888889999999999876.555544...345556666777777777777777765543 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.6e-06
       MFS_3 286 lvllaavalAlvllslalasslwvavlvlllgGaaWitalstlnvavqlavPrWvvgRalavYltvlaGglaaGsllWGavaealsvtlaLlaaaaall 384
                 + +l + + A+ ll +++a++ ++a +   l+Ga++ +++  l v +  avP+  +g ala Y + ++ +l   + l G +   +++++  laaa +++
  CTQ30423.1 283 VAMLCFSVEAIGLLLVGFADTPMMAKIGTFLTGAGFSLVFPALGVVAVKAVPQHNQGSALATYTVFMDLSLGVSGPLAGLLMAWTGISMIYLAAAGLVM 381
                 444444455555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 PP

       MFS_3 385 laaaillllk 394
                 +a +++ +lk
  CTQ30423.1 382 AALLLGWRLK 391
                 5555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2973.69
//
Query:       CTQ30424.1  [L=349]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-75  253.2  37.8    3.8e-75  253.1  37.8    1.0  1  AI-2E_transport  AI-2E family transporter


Domain annotation for each model (and alignments):
>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.1  37.8   2.1e-79   3.8e-75       2     326 ..      14     328 ..      13     329 .. 0.98

  Alignments for each domain:
  == domain 1  score: 253.1 bits;  conditional E-value: 2.1e-79
  AI-2E_transport   2 llilvllllllalypfiselllplliAlvlayllnpvvkfLkkrgvkrvlavllvlllllvllvllvlllvplliaqltqlvkslpayidslqn 95 
                      ll l+ l+++la +++++++l++ll+Al++a++lnp+v+++ +rgv+r++a++lv++++lv+l+ l+++l+    a+l+++v  lp+++  l +
       CTQ30424.1  14 LLKLAALVIILAGIHAAADILVQLLLALFFAIVLNPLVTWFIRRGVRRPFAITLVVTAMLVMLTALLGVLA----ASLNDFVAMLPDFNRALTR 103
                      6678999****************************************************************....******************* PP

  AI-2E_transport  96 ilnelpslleelenliqalkqslskilsnilssilnsllsllasllglilslvlvllllffllldgeklrqgilkllpervrervkailrelek 189
                       + +l++ l++l     +l+ + +++l++++s+ l++  + l++ l++++  +++l+++++++l + ++++++l++++++ r +++ ++r+l+ 
       CTQ30424.1 104 KILQLQEYLPFL-----NLHINPERMLRRMDSERLMTWATTLMTQLSGAMASIVLLVMTVIFMLFEVRHLPYKLRFALNNPRLHIAGLHRALKG 192
                      ************.....7**************************************************************************** PP

  AI-2E_transport 190 tlsgylrgqvlvaliigvlvfigllilgvpyalllailvglanliPyiGavivlipiaiialltggikevlivlivvllvqliegnilePklmg 283
                       +++yl  ++l++l++g++v+ gll++gv++al++++l++l+n++P+iG++i++ip++++all+ gi+e+l+v +++l+v+++ gn++eP++mg
       CTQ30424.1 193 -VTHYLALKTLISLWTGLIVWLGLLAMGVQFALMWGVLAFLLNYVPNIGSAISAIPPMLQALLFSGIYECLLVGALFLVVHMVLGNMVEPRMMG 285
                      .7******************************************************************************************** PP

  AI-2E_transport 284 krlglhplvillsllaggklfGlvGlilavpltavikaileay 326
                      +rlg+++lv++lsll++g+l+G+vG++l+vplt+v+k ++e++
       CTQ30424.1 286 HRLGMSTLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKIWMETT 328
                      ****************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       936  (0.0522059); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2388.51
//
Query:       CTQ30425.1  [L=126]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-05   23.6  16.6    0.00011   22.4  16.6    1.6  1  EamA            EamA-like transporter family
     0.0026   18.4   4.5     0.0026   18.4   4.5    2.0  2  Multi_Drug_Res  Small Multidrug Resistance protein
  ------ inclusion threshold ------
      0.094   13.2  10.6       0.41   11.1   1.1    2.3  2  DUF202          Domain of unknown function (DUF202)
        3.3    8.0   7.0         23    5.3   0.2    3.4  3  Fun_ATP-synt_8  Fungal ATP synthase protein 8 (A6L)
        3.4    5.8   6.2        3.9    5.7   6.2    1.0  1  DUF2070         Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4  16.6   3.1e-08   0.00011      62     136 ..      44     120 ..       1     121 [. 0.80

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 3.1e-08
        EamA  62 kdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvll..lgekltlkqllgivlillGvllil 136
                 ++  + l++gllg +l +++++ al++++ s+a  ++sl+ +++   +++l  ++e++ + +llg+++i++Gvl i+
  CTQ30425.1  44 QPGTFGLFFGLLGYLLSMVCWYFALHRLPLSKAYALLSLSYILVWAAAIWLpgWHEPFYWQSLLGVAIIVAGVLTIF 120
                 3444669************************************999999985569******************9987 PP

>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.22   7.8e+02      30      54 ..       4      28 ..       2      33 .. 0.86
   2 !   18.4   4.5   7.4e-07    0.0026      35      93 .]      53     112 ..      24     112 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.22
                    ----HHHHHHHHHHHHHHHHH---- CS
  Multi_Drug_Res 30 tpsllvivgygisfllLskalkslp 54
                    ++ ll +  ++++ llL  a+  lp
      CTQ30425.1  4 FWALLSVGLVSAAQLLLRSAMVALP 28
                    6889999999999999999998776 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 7.4e-07
                     HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH.H--------HHHHHHH CS
  Multi_Drug_Res  35 vivgygisfllLskalkslpvsvAYavwsGiGtvlivlvgill.fgeslslkkliglali 93 
                      ++gy++s+++  +al+ lp+s AYa++s + +++ +++ +l  ++e++ ++ l+g+a+i
      CTQ30425.1  53 GLLGYLLSMVCWYFALHRLPLSKAYALLSLSYILVWAAAIWLPgWHEPFYWQSLLGVAII 112
                     4569************************977666665555552589**********9987 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.7    0.0023       8.3      16      61 ..       8      70 ..       3      72 .. 0.83
   2 ?   11.1   1.1   0.00012      0.41      20      57 ..      85     121 ..      76     126 .] 0.71

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0023
      DUF202 16 tslalialglallrffl.................tgepsalgkilglilivlgiltllvglvr 61
                 s++l++++ +llr+                   +++p ++g  +gl+  +l+++++ ++l+r
  CTQ30425.1  8 LSVGLVSAAQLLLRSAMvalppltdivaflqhllHFQPGTFGLFFGLLGYLLSMVCWYFALHR 70
                5777777777777766688889999999999999******99******99*****99999998 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00012
      DUF202  20 lialglallrffltgepsal..gkilglilivlgiltllv 57 
                 +++ ++a+   +l+g+++++  +++lg+++iv+g+lt+++
  CTQ30425.1  85 ILVWAAAI---WLPGWHEPFywQSLLGVAIIVAGVLTIFW 121
                 33334444...458888885338***************98 PP

>> Fun_ATP-synt_8  Fungal ATP synthase protein 8 (A6L)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.035   1.2e+02       8      36 ..       3      31 ..       2      35 .. 0.87
   2 ?    2.3   0.3     0.053   1.9e+02      15      34 ..      77      96 ..      60      99 .. 0.88
   3 ?    5.3   0.2    0.0063        23       6      25 ..     100     119 ..      98     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.035
                    THHHHHHHHHHHHHHHHHHHHHTHHHHHH CS
  Fun_ATP-synt_8  8 YFvNqltfgfliltvllylfskyiLPrll 36
                    +F   l+ g+++   ll+ ++   LP l 
      CTQ30425.1  3 FFWALLSVGLVSAAQLLLRSAMVALPPLT 31
                    6778999**************99999775 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.053
                    HHHHHHHHHHHHHHHTHHHH CS
  Fun_ATP-synt_8 15 fgfliltvllylfskyiLPr 34
                    +++l+l+ +l+  + + LP 
      CTQ30425.1 77 YALLSLSYILVWAAAIWLPG 96
                    89999999999999999995 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0063
                     SSTHHHHHHHHHHHHHHHHH CS
  Fun_ATP-synt_8   6 PFYFvNqltfgfliltvlly 25 
                     PFY+   l  ++++  vl +
      CTQ30425.1 100 PFYWQSLLGVAIIVAGVLTI 119
                     9***********99998865 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.2    0.0011       3.9      20     113 ..      23     120 ..      10     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0011
     DUF2070  20 liillalligllaflssk......lfgillfglpalvaflltlpvlrilggrltykrs.lflalltelivviisllaillsall.qalvllalvlslal 110
                 +++ l  l++++afl +        fg+++ +l +l++++  + +l      l+++++ ++l+l   l++++ ++l+     +  q+l+  a++++ +l
  CTQ30425.1  23 AMVALPPLTDIVAFLQHLlhfqpgTFGLFFGLLGYLLSMVCWYFALHR----LPLSKAyALLSLSYILVWAAAIWLPGWHEPFYwQSLLGVAIIVAGVL 117
                 678888888888888888888888888888888899999988888855....45666669999999999999999999999888888888787777555 PP

     DUF2070 111 vfa 113
                 +++
  CTQ30425.1 118 TIF 120
                 544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 983.07
//
Query:       CTQ30426.1  [L=112]
Description: conserved hypothetical protein; inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-14   53.0   4.3    4.3e-14   52.9   4.3    1.1  1  EamA            EamA-like transporter family
    8.1e-11   42.4   0.3    1.2e-10   41.9   0.3    1.2  1  Multi_Drug_Res  Small Multidrug Resistance protein
    1.8e-06   28.0   0.0    2.5e-06   27.5   0.0    1.3  1  TMEM234         Putative transmembrane family 234
    0.00011   22.0   4.8    0.00012   21.8   4.3    1.3  1  DUF2157         Predicted membrane protein (DUF2157)
  ------ inclusion threshold ------
      0.032   14.7   7.1       0.13   12.8   7.1    1.9  1  DUF202          Domain of unknown function (DUF202)
        0.2   11.7   0.7       0.61   10.1   0.0    2.0  2  DUF5345         Family of unknown function (DUF5345)
       0.26   11.6   7.0        0.2   12.0   0.5    2.4  2  DUF3040         Protein of unknown function (DUF3040)
       0.31   11.1   0.5       0.46   10.6   0.1    1.4  2  MCU             Mitochondrial calcium uniporter
       0.94    9.1  12.9       0.42   10.2   7.9    2.0  2  DUF4131         Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   4.3   2.1e-17   4.3e-14      34     135 ..       2     108 ..       1     110 [. 0.84

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 2.1e-17
        EamA  34 tfvrfliagilllii.allkegklaklslkd.....wllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgiv 126
                 +++ +l+++ ll+    l++++   ++s+++     +l+ l ++ll+  +++ll+++ l+++++s+a +++sl  v++++ ++ +++e++  +++lg++
  CTQ30426.1   2 SVWICLVCASLLSCAgQLCQKQAT-RPSRRGrrsrhILFWLGMALLCLGCGMLLWLSVLQSIPVSIAYPMLSLNFVWVTLAGWGIWHEPVARRHWLGVG 99 
                 567778777777655355555555.444444455559999*********************************************************** PP

        EamA 127 lillGvlli 135
                 li++G++++
  CTQ30426.1 100 LIVVGIVIL 108
                 ******997 PP

>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.3   5.9e-14   1.2e-10       3      93 .]       4     101 ..       2     101 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 5.9e-14
                     -HHHHHHHHHHHHHHHH---........-----------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHH CS
  Multi_Drug_Res   3 wvllvlAillevvgailLkl........segftkltpsllvivgygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslkklig 89 
                     w+ lv+A ll+++g++  k+            + l++  ++++++g+ +ll    l+s+pvs+AY+++s + +v ++l+g+ +++e++   +++g
      CTQ30426.1   4 WICLVCASLLSCAGQLCQKQatrpsrrgRRSRHILFWLGMALLCLGCGMLLWLSVLQSIPVSIAYPMLS-LNFVWVTLAGWGIWHEPVARRHWLG 97 
                     9*******************99998776666667889999999************************97.89*********************** PP

                     HHHH CS
  Multi_Drug_Res  90 lali 93 
                     ++li
      CTQ30426.1  98 VGLI 101
                     **98 PP

>> TMEM234  Putative transmembrane family 234
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.2e-09   2.5e-06      52     115 ..      46     108 ..      21     109 .. 0.90

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.2e-09
     TMEM234  52 llNqsgSvlfflllgkadlslavpiaNslafvfTvltelllgekvlkkktvlgmllvvvgialc 115
                 l   +g +l+   l+++++s+a p+  sl+fv  +l ++ +  + + ++ +lg++l+vvgi+++
  CTQ30426.1  46 LCLGCGMLLWLSVLQSIPVSIAYPML-SLNFVWVTLAGWGIWHEPVARRHWLGVGLIVVGIVIL 108
                 44458999****************97.9*********************************986 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   4.3   6.2e-08   0.00012      24     109 ..      24     111 ..      15     112 .] 0.81

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6.2e-08
     DUF2157  24 eeresarrrsfleallvlGalllglGlilf.vAanWqglsrlvkfllllvllllslllgavlwrdr.rvpprlgeallllaalllgaa 109
                 ++r s+r+r+++ +l++lG+ ll+lG  ++   ++ q+++  +   +l + ++ + l+g+ +w ++  ++++lg +l++++ ++lg++
  CTQ30426.1  24 ATRPSRRGRRSRHILFWLGMALLCLGCGMLlWLSVLQSIPVSIAYPMLSLNFVWVTLAGWGIWHEPvARRHWLGVGLIVVGIVILGTS 111
                 2334456677799****9998888887554146789****************************999789***************987 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   7.1   6.3e-05      0.13      11      58 ..      38     111 ..      35     112 .] 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.3e-05
      DUF202  11 LaWlRtslalialglallrffl...........................tgepsalgkilglilivlgiltllvg 58 
                 L Wl ++l+ ++ g +l+ + l                           ++ +++ +++lg++liv+gi++l+++
  CTQ30426.1  38 LFWLGMALLCLGCGMLLWLSVLqsipvsiaypmlslnfvwvtlagwgiwHEPVAR-RHWLGVGLIVVGIVILGTS 111
                 67****************9988888888899998888888888888665444444.7**************9876 PP

>> DUF5345  Family of unknown function (DUF5345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0003      0.61      31      62 ..      27      58 ..      17      67 .. 0.71
   2 ?   -0.8   0.1      0.77   1.5e+03      46      57 ..      97     108 ..      93     111 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0003
     DUF5345 31 erkrkrlrrElllFlliAllilsllllalvqa 62
                  +r r+ r +l  l +All+l+ ++l++++ 
  CTQ30426.1 27 PSRRGRRSRHILFWLGMALLCLGCGMLLWLSV 58
                3445555566666667**********999875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.77
     DUF5345  46 liAllilsllll 57 
                  + l+++++++l
  CTQ30426.1  97 GVGLIVVGIVIL 108
                 577888888776 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   9.8e-05       0.2      31      67 ..      25      62 ..       9      86 .. 0.54
   2 ?    3.0   1.1     0.061   1.2e+02      45      59 ..      94     108 ..      85     112 .] 0.62

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.8e-05
     DUF3040 31 ggaararrrslrrlavlavllfvaGllllvlG.vaaaa 67
                ++ +r+ rrs++ l +l+++l+ +G  +l+   v+ ++
  CTQ30426.1 25 TRPSRRGRRSRHILFWLGMALLCLGCGMLLWLsVLQSI 62
                22222444445555555555555555554433244444 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.061
     DUF3040  45 avlavllfvaGllll 59 
                  +l+v l+v+G+++l
  CTQ30426.1  94 HWLGVGLIVVGIVIL 108
                 566666666666655 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00023      0.46      73     109 ..      20      56 ..      12      59 .. 0.89
   2 ?   -3.5   0.0       4.7   9.3e+03      90     104 ..      92     106 ..      88     108 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
                 HHHHHHHTCCCGGGCHHHHGGGHHHHHHHHTHHHHHH CS
         MCU  73 leekkeeidekAerrtrrllwagLallavqlgilarL 109
                 ++++ ++ +++ +r +  l w+g+all++  g+l +L
  CTQ30426.1  20 CQKQATRPSRRGRRSRHILFWLGMALLCLGCGMLLWL 56 
                 5677788899999**********************99 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.7
                 HHGGGHHHHHHHHTH CS
         MCU  90 rllwagLallavqlg 104
                 r  w+g +l++v + 
  CTQ30426.1  92 RRHWLGVGLIVVGIV 106
                 456777777766655 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   7.9   0.00021      0.42       4      56 ..       2      63 ..       1      79 [. 0.59
   2 ?    1.8   0.5     0.082   1.6e+02      14      43 ..      76     105 ..      68     111 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00021
     DUF4131  4 plalvllalllllllllllllrr.......rprrrv..llllllllllallgfalrapqpna 56
                +++++l+++ ll ++  l++++        r++r++  +l+ +ll+l +++ ++l+++q   
  CTQ30426.1  2 SVWICLVCASLLSCAGQLCQKQAtrpsrrgRRSRHIlfWLGMALLCLGCGMLLWLSVLQSIP 63
                45666666666666666777666988776633333343555555555555556666665555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.082
     DUF4131  14 lllllllllllrrrprrrvlllllllllla 43 
                 ++++l+ + ++++   rr +l+++l+ + +
  CTQ30426.1  76 VWVTLAGWGIWHEPVARRHWLGVGLIVVGI 105
                 556677777777766777777777776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 951.52
//
Query:       CTQ30427.1  [L=551]
Description: 4-amino-4-deoxy-L-arabinose transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-51  172.9  17.1    8.5e-51  172.9  17.1    1.7  2  PMT       Dolichyl-phosphate-mannose-protein mannosyltransfer
    9.6e-14   51.9  17.4    9.6e-14   51.9  17.4    2.9  3  PMT_2     Dolichyl-phosphate-mannose-protein mannosyltransfer
  ------ inclusion threshold ------
          4    7.1   7.3         35    4.0   0.5    3.6  3  DUF2368   Uncharacterised conserved protein (DUF2368)


Domain annotation for each model (and alignments):
>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.9  17.1   1.4e-54   8.5e-51       2     245 .]       4     237 ..       3     237 .. 0.98
   2 ?   -4.5   2.6       2.1   1.2e+04     188     231 ..     357     398 ..     351     422 .. 0.54

  Alignments for each domain:
  == domain 1  score: 172.9 bits;  conditional E-value: 1.4e-54
         PMT   2 iltllallirlwrlslpnsvvfdevhfgkfasdYlehsffmdvh.pplgkmllalggyLagkdgnftfesigaeyypenvpyvslRlfsallgslivpl 99 
                 i++ ++l++ +++++l + + ++ ++++++  +Y+e+s++m+++ ++ ++++l  g+++++k+++ +++++++++ ++ ++++++R+ s ++++++++l
  CTQ30427.1   4 IRYGVSLIALFALYYLLPLNFRLLWQPDET--RYAEISREMLATgDWVVPHFL--GLRYFEKPIAGYWINSIGQWLFG-HNNFGVRFGSVFAITMTALL 97 
                 67899*************************..************999999999..99*********************.******************** PP

         PMT 100 vyltllelgfskltallaallvllenslitlsryilldspLlfftllsmyclvkferkapfsrswwlwllltgvalglavsvKwvglftvllvgllliw 198
                 v +++ ++ ++k++a+l+ +++l+  +++++++y++ld++++++++l+m++++ +  +a+ + +++l ++l+gva+g++v++K++++++v +v+++l+w
  CTQ30427.1  98 VAWLAWRIFRDKRVAILSPVIFLTAMLVYAIGTYAVLDPMITLWLALAMCSFWGAA-QAQSRSGKILGYVLLGVACGMGVMTKGFLALAV-PVVGVLPW 194
                 *******************************************************7.9*****************************999.******** PP

         PMT 199 elwqllgdkslllksivkhllaralaliviPvtlylavftvhfwllf 245
                  + +++++++l+++    +l++ +++l+v+P+ l++a+++++fw +f
  CTQ30427.1 195 VIARKRWREVLTYG----WLAVIVCTLVVLPWGLAIAQREPDFWRYF 237
                 **************....**************************997 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 2.1
         PMT 188 tvllvgllliwelwqllg.dkslllksivkhllaralaliviPvt 231
                  ++ v+++ +w  +++    k  l+k   + l+a a+a+ ++  +
  CTQ30427.1 357 GLIAVLVVSPWGFMHRPVwTKIELYK---CLLAAIAFAVWALMGW 398
                 55555555555555544324444444...5555555555444333 PP

>> PMT_2  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9  17.4   1.6e-17   9.6e-14       2     156 ..      61     222 ..      60     225 .. 0.86
   2 ?   -0.6   0.6      0.23   1.4e+03     135     159 .]     342     367 ..     293     375 .. 0.62
   3 ?   -2.6   6.0      0.97   5.8e+03      54     114 ..     356     422 ..     349     426 .. 0.65

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 1.6e-17
       PMT_2   2 hPPliawllalftklfgfselairlvsalagvltilllyllarrlfg.kraallaalllavvplfvalsalftpdaplvllwalalylllrale....k 95 
                 +P   +w+ +++  lfg++++++r+ s+ a+ +t+ll+  la r+f  kr+a+l+ ++  + +l++a+++   +d + +l +ala+  +  a++    +
  CTQ30427.1  61 KPIAGYWINSIGQWLFGHNNFGVRFGSVFAITMTALLVAWLAWRIFRdKRVAILSPVIFLTAMLVYAIGTYAVLDPMITLWLALAMCSFWGAAQaqsrS 159
                 7999************************99999999999999999988**********************99999999999999999999999977666 PP

       PMT_2  96 nklkywllagvlfGlgflsKytaallliaallyllis.arrilke..kkpylalllalllfspv 156
                 +k+  ++l+gv+ G+g+++K + al ++ ++  l +  ar++++e   + +la++++ l+++p+
  CTQ30427.1 160 GKILGYVLLGVACGMGVMTKGFLALAVP-VVGVLPWViARKRWREvlTYGWLAVIVCTLVVLPW 222
                 778899**********************.55555555555666773466667888888888876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.23
       PMT_2 135 r.ilkekkpylalllalllfspvliw 159
                   +++ ++ + ++ll+l++++ v +w
  CTQ30427.1 342 AlRINGMINLGVGLLGLIAVLVVSPW 367
                 23444455555666666666655555 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.97
       PMT_2  54 laalllavvplfvalsa....lftpdaplvllwalalylllraleknk.lkyw.llagvlfGlgfls 114
                 l+ + + vv  ++++ +    +++++  l++++a+a+++l+  l  +   + w l+a + +Gl++l+
  CTQ30427.1 356 LGLIAVLVVSPWGFMHRpvwtKIELYKCLLAAIAFAVWALMGWLAMKDcGRRWsLAALCPLGLALLV 422
                 5555555544455555545556777788888888888888877774443444438888889998885 PP

>> DUF2368  Uncharacterised conserved protein (DUF2368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.5    0.0058        35      60      95 ..      93     128 ..      85     131 .. 0.86
   2 ?    0.6   0.1     0.069   4.1e+02      51      78 ..     202     231 ..     195     235 .. 0.80
   3 ?    3.7   0.2    0.0071        42      63      93 ..     299     331 ..     292     346 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0058
     DUF2368  60 fyalavvllaagaikrknpllliPlvPLtfvlaYqy 95 
                  +al v+ la  +++ k+ ++l P++ Lt +l Y +
  CTQ30427.1  93 MTALLVAWLAWRIFRDKRVAILSPVIFLTAMLVYAI 128
                 56788888899999******************9975 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.069
     DUF2368  51 rellkw..lasfyalavvllaagaikrknp 78 
                 re+l++  la+ +++ vvl ++ ai +++p
  CTQ30427.1 202 REVLTYgwLAVIVCTLVVLPWGLAIAQREP 231
                 67776555***********99999998876 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.0071
     DUF2368  63 lavvllaagaikrknpllliPlv.PLtfvla.Y 93 
                 +a+++l+ ++ k k p++++P++ PL++++a Y
  CTQ30427.1 299 VAMPFLFFSIAKGKLPTYILPCFaPLSILMArY 331
                 6889999***************99**9988735 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4242.41
//
Query:       CTQ30428.1  [L=300]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-09   35.6   0.0    1.3e-08   34.8   0.0    1.3  1  Polysacc_deac_1  Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   7.3e-13   1.3e-08      16     120 ..      15     166 ..       4     169 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 7.3e-13
                      SSCSCHHHHHHHHHHCT--EEEEE-HH..HHCH-.........................................HHHHHHHHHTTEEEEE--S CS
  Polysacc_deac_1  16 gprdntteilpvLkkykvkatffvigg..lvedy.........................................pdevremaasGveignHti 66 
                      g+rd+++++l++L +++++a ff++ g  +++++                                          + v + aa+ +e+g H +
       CTQ30428.1  15 GTRDGVPRLLELLGRHGIQASFFFSVGpdNMGRHlwrlvkpkflwkmlrsraaslygwdillagtawpgrrigagNEAVIRAAAESHEVGLHAW 108
                      679*******************998873456666*****************************************88888888888******** PP

                      S--EG....GGSHHHHHHHHHHHHHHHHHHHHS----EEE-GGGEE-HHHHHHHHHTT CS
  Polysacc_deac_1  67 nhsnl....krlseeevrreierakdalrkalgreprlfryPygsasatvlevarelg 120
                      +h  +      + +e+++ e+er    l++++gr+++  +  + +a+++v+++ ++ +
       CTQ30428.1 109 DHYSWqawsGVWPQERLALEVERGLLELERIIGRPVTCSAVAGWRADQRVVKAKESFD 166
                      ***996666667799***********************99999999999987766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       248  (0.0138323); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 2444.29
//
Query:       CTQ30429.1  [L=661]
Description: fused UDP-L-Ara4N formyltransferase; UDP-GlcA C-4'-decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-44  150.0   0.0    1.1e-43  149.4   0.0    1.2  1  Epimerase       NAD dependent epimerase/dehydratase family
    1.7e-25   89.8   0.0    2.6e-25   89.2   0.0    1.3  1  Formyl_trans_N  Formyl transferase
    3.9e-25   89.0   0.0    5.4e-25   88.5   0.0    1.2  1  GDP_Man_Dehyd   GDP-mannose 4,6 dehydratase
    2.2e-18   66.3   0.0    5.4e-18   65.1   0.0    1.6  1  Formyl_trans_C  Formyl transferase, C-terminal domain
    5.6e-06   25.6   0.0      8e-06   25.1   0.0    1.2  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
     0.0013   18.7   0.0     0.0028   17.6   0.0    1.6  1  NAD_binding_10  NAD(P)H-binding
     0.0093   15.2   0.0       0.73    9.0   0.0    2.3  1  NAD_binding_4   Male sterility protein
  ------ inclusion threshold ------
       0.18   10.9   0.0        0.3   10.1   0.0    1.3  1  RmlD_sub_bind   RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   0.0   4.9e-47   1.1e-43       1     241 []     318     566 ..     318     566 .. 0.95

  Alignments for each domain:
  == domain 1  score: 149.4 bits;  conditional E-value: 4.9e-47
                 EEEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC.EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg.yevigldrlssasntarledl.elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgtln 97 
                 +l++G++GfiG++l+++ll+ + ye+ gld  s+a  + ++    ++ve+d+  +s++ ++  + ++d+v+ l a++++ ++  +p +++e +++ +l+
  CTQ30429.1 318 VLILGVNGFIGNHLTERLLQDDnYEIYGLDIGSDAISRFLDCPRfHFVEGDISIHSEWIEYHIK-KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLK 415
                 79****************99999*********9999998888779***************9775.9********************************* PP

                 HHHHHHHHTCTEEEEEEEGGGGTSCSSSS...BSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTT....S-TTS.TTSHHH CS
   Epimerase  98 lleaarkagvkrllflsSsevYGkdaeqp...keettltgpl.kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGpr....ngege.vsrvip 187
                 ++  + k++  r++f s+sevYG  +++    +++++  gp+ k+++ Y+++K++ +++++ay +++gl+++ +r+fn++Gpr    n  +   sr i+
  CTQ30429.1 416 IIRDCVKYNK-RIIFPSTSEVYGMCTDKNfdeDSSNLVVGPInKQRWIYSVSKQLLDRVIWAYGDKNGLKFTLFRPFNWMGPRldnlNAARIgSSRAIT 513
                 **********.************9999433458888999999*******************************************99888889****** PP

                 HHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 188 alirkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 +li ++ eg  +++l+  g+++R f +++D +ea+ +++e+ d   +g+i+niG
  CTQ30429.1 514 QLILNLVEGS-PIKLIEGGKQKRCFTDISDGIEALFRIIENKDGRCDGQIINIG 566
                 **********.******************************99988899****9 PP

>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   1.2e-28   2.6e-25      30     181 .]      26     177 ..       2     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 1.2e-28
                     EEEEEESCTTEHCHHHHHHCCHCCCECHHCC...SCCCCCCCHHHHHHHHCTT-SEEEEES--S---HHHHHSSTTSEEEEESSSTTTTBSS-HH CS
  Formyl_trans_N  30 vvlvvsnkdkaaglekaeaasiptkvfeekk...leprsqfeeelaeelkelkadlivlagymkllpkelvqavrlkilniHpSLLPrfkGaaai 121
                     ++++++ +d++        ++ ++++++e++   + p+    +  +e ++e+k+d+     y  ll++e+++  ++++ n+H+SLLP+++G a+ 
      CTQ30429.1  26 IAAIFTHPDNPG---ENHFFGSVARLAAEQGipvWAPEDVNHPLWIERIREMKPDVLFSFYYRNLLGDEILNLAPKGAFNLHGSLLPKYRGRAPL 117
                     555555555554...4555666677777777888899999999999************************************************* PP

                     HHHHHTTSSEEEEEEEE--SSSSTS-EEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH CS
  Formyl_trans_N 122 qraleaGdketGvtihfvdeelDtGailaqkkveiiaedtkeeleqrvadaehkalveal 181
                     +++l +G+ etGvt h + ++ D G+i+aq++v i a+d + +l +++  a  ++l +al
      CTQ30429.1 118 NWVLVNGESETGVTLHRMVNRADAGDIVAQQAVAIGADDAALTLHRKLCAAATELLSRAL 177
                     ***************************************************999999885 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.0   2.4e-28   5.4e-25       1     331 [.     319     644 ..     319     645 .. 0.78

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 2.4e-28
                    EEETTTSHHHHHHHHHHHHC.T-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHH.HHHHHHHHT-SEEEE--S---HHHHTTS CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlek.gyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDsss.lerllaevqpdevynLAAqshVdvsfek 94 
                    Li G++GfiG++l+e+Ll+  +ye++g++  s++     i++  +       +++++++gD++ +s+ +e  ++++  d v+ L A     +   +
     CTQ30429.1 319 LILGVNGFIGNHLTERLLQDdNYEIYGLDIGSDA-----ISRFLDC------PRFHFVEGDISIHSEwIEYHIKKC--DVVLPLVAIATPIEYTRN 401
                    89****************8758*****9877766.....5555543......5799******97555156666665..9***************** PP

                    HHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TT......S---.--SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EE CS
  GDP_Man_Dehyd  95 PeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEt......tpfy.PrsPYaaaKlyadwivvnyreayglfavngilfnh 183
                    P +++e ++   l+++  + ++    ++r+++ StsEvYG  ++  ++E+       p++  r+ Y+++K   d ++ +y ++ gl  +  + fn 
     CTQ30429.1 402 PLRVFELDFEENLKIIRDCVKY----NKRIIFPSTSEVYGMCTDKNFDEDssnlvvGPINkQRWIYSVSKQLLDRVIWAYGDKNGLKFTLFRPFNW 493
                    ********99887776666555....579********************86665555554269********************************* PP

                    ESTTS-TT.....SCCCHHHHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHC.HHCCHHCCCHHHHHH CS
  GDP_Man_Dehyd 184 esprrget.....fvtrkitravarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvref.velaflelgktiewe 273
                     +pr  +         r it+ + +  +g   +l +  +++kR ++ ++D +ea+ ++++++       ++g+  ++++  +e++++el + + + 
     CTQ30429.1 494 MGPRLDNLnaariGSSRAITQLILNLVEGSPIKL-IEGGKQKRCFTDISDGIEALFRIIENKDG----RCDGQIINIGNPdNEASIKELAEMLLAC 584
                    ****8763233345899************97776.566899******************99765....3566667765541455556666555544 PP

                    .............TTGGCCCEECGG--S.S--SB--B-THHHHHHH----SS-HHHHHHH CS
  GDP_Man_Dehyd 274 gkgeeevgra.kesgkvvvevdpkyfrp.gevdlllgdaskakeeLgWkpkvsfeelvre 331
                     ++   ++r     g  +ve +  y +  ++v+ +   ++ ak+ L+W+pkv++ee+v+ 
     CTQ30429.1 585 FERHPLRDRFpPFAGFREVESSDYYGKGyQDVEHRKPSIRNAKRCLNWEPKVEMEETVEH 644
                    43333333321344555555554444444899*************************986 PP

>> Formyl_trans_C  Formyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   2.4e-21   5.4e-18       3      97 ..     202     294 ..     201     297 .. 0.95

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 2.4e-21
                     -GGGGB--TTSBHHHHHHHHHHT-.TS--EEEEETTEEEEEEEEEEE-S--SS-.TTSEEETT..TEEEE-SBSEEEEEEEEETTS--EEHHHHH CS
  Formyl_trans_C   3 kkedgridwnqsaeeihnlvrgls.pwPgayttlngkrvkllkaevvsesssaespGtivavdkggllvacgdgallilelqlegkkamsaedfl 96 
                     ++edgr+dw+ +a+++hnlvr++s pwPga+ +   +++ ++k++v ++  +a+ pGt++++    l+vac+dgal+i + q e +  m++++++
      CTQ30429.1 202 TPEDGRLDWELPAQTLHNLVRAVSdPWPGAFGYAGANKFIVWKSRVRHDLPAAK-PGTVLSIA--PLIVACQDGALEIVTGQTERGVYMQGAQLA 293
                     68*********************************************9999999.******99..68************************9998 PP

                     H CS
  Formyl_trans_C  97 n 97 
                     +
      CTQ30429.1 294 Q 294
                     6 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   3.6e-09     8e-06       1     185 [.     319     497 ..     319     522 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 3.6e-09
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkviegDvt.dkdkleealegvdvvihlasl.vdvagkltedeimkvnvkGTr 97 
                 +++G  GF+G++l ++L++ ++  e+  lD+  +    +++  + + +++egD+    + +e  +++ dvv+ l ++ +++  + +  ++ +   +   
  CTQ30429.1 319 LILGVNGFIGNHLTERLLQDDN-YEIYGLDIGSDAI--SRFLDCPRFHFVEGDISiHSEWIEYHIKKCDVVLPLVAIaTPIEYTRNPLRVFELDFEENL 414
                 689****************997.8998888876654..59**************825567999*********8766515566677888999******** PP

   3Beta_HSD  98 nvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyesl..hqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGeg 185
                 +++  cvk + +++++ S+ ev g   + +++ +   +l + +      +y+ sK+l ++++ +  +   kng  l     Rp    G++
  CTQ30429.1 415 KIIRDCVKYN-KRIIFPSTSEVYGM-CTDKNFDEDSSNLVVGPInkQRWIYSVSKQLLDRVIWAYGD---KNG--LKFTLFRPFNWMGPR 497
                 ********98.889********999.67777776666655544422455789999988888877777...777..555556666666665 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.3e-06    0.0028       1     143 [.     322     490 ..     322     497 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.3e-06
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-C.CHHHHHHTT-SEE..EES---TCC..HHHH...........HH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdv.edlaealkgadaV..vsalggggk..deeg...........ak 79 
                     G +G +G +l+++ll+++++e+  l   ++ ++++ + ++ + vegd++ + e ++ ++k +d+V  ++a+++  +  +                
      CTQ30429.1 322 GVNGFIGNHLTERLLQDDNYEIYGLDIGSDAISRFLDCPRFHFVEGDISIHsEWIEYHIKKCDVVlpLVAIATPIEytR--NplrvfeldfeeNL 414
                     789*******************9999999******999***********651669**********55566655555441..23455666666688 PP

                     HHHHHHHHCT--EEEEEEETTTTS.GCGCHHHHHHHH.CCHHH.......HHHHHHHHHHHHH....SSSEEEEEEE CS
  NAD_binding_10  80 nivdaakeagvkRfvlvsaigvgd.evpgefgewnke.llkay.......laakraaeellra....sgldwTivrp 143
                     +i++ + + + kR+++ s+  v+   ++++f+e  ++ +++++          k+  ++++ a     gl++T  rp
      CTQ30429.1 415 KIIRDCVKYN-KRIIFPSTSEVYGmCTDKNFDEDSSNlVVGPInkqrwiySVSKQLLDRVIWAygdkNGLKFTLFRP 490
                     9999998865.799999999998634555666554442222221111111356777777776666657788887777 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00032      0.73       3      28 ..     322     346 ..     320     536 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00032
                    -TTSHHHHHHHHHHHHHS-.TEEEEE CS
  NAD_binding_4   3 GaTGFLGkvLlekLLrttpevkiyll 28 
                    G+ GF+G++L e+LL++++ ++iy l
     CTQ30429.1 322 GVNGFIGNHLTERLLQDDN-YEIYGL 346
                    8999999999999998875.488755 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00013       0.3       2     118 ..     317     449 ..     316     482 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00013
                    EEEEESTTSHHHHHHHHHCTT.TSEEEEEE-TT................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlae.eglevlaltre................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaayavnae 80 
                    ++l++G nG +G +L+++l + +++e+++l+                  e d++  ++  e   + k+dvv  + A     +   ++ + ++++ e
     CTQ30429.1 317 RVLILGVNGFIGNHLTERLLQdDNYEIYGLDIGsdaisrfldcprfhfvEGDISIHSEWIEYHIK-KCDVVLPLVAIATPIEYTRNPLRVFELDFE 411
                    89*************9876553899*****87778999999999888888888766655554433.79********99999999************ PP

                    HHHHHHHHHHHCT-EEEEEEEGGGS-S-TTS-B-TTS- CS
  RmlD_sub_bind  81 avealAeaaaavgalLihvStDyVFdGekkrpYeedde 118
                       ++ + + +++  +i+ St  V+   +++++ ed+ 
     CTQ30429.1 412 ENLKIIRDCVKYNKRIIFPSTSEVYGMCTDKNFDEDSS 449
                    ************************99888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4772.00
//
Query:       CTQ30430.1  [L=327]
Description: undecaprenyl phosphate-L-Ara4FN transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-32  113.1   0.0    1.6e-32  112.6   0.0    1.2  1  Glycos_transf_2  Glycosyl transferase family 2
    4.4e-15   56.2   0.1      1e-14   55.0   0.1    1.6  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    3.3e-06   26.8   0.0    4.6e-06   26.3   0.0    1.2  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
     0.0002   21.8   0.1    0.00058   20.3   0.0    1.8  2  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   0.0   3.7e-36   1.6e-32       1     166 [.      11     171 ..      11     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 112.6 bits;  conditional E-value: 3.7e-36
                      EEEEEESS-...TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCH.C-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSE CS
  Glycos_transf_2   1 svviptyNe...ektlletlesllaqdpypdfeiivvDDgStDetveileelak.edprvrvirreenvGkagalnaglraatgdyilflDaDd 90 
                      svvip+yNe    ++ll+ +++++a      +ei+++DDgS+D+++ +l e+a+ e+ +v  + +++n G+++a++ag++++tgd+i++lDaD+
       CTQ30430.1  11 SVVIPVYNEqdsLPELLRRTDAACAT-LGRQYEILLIDDGSSDDSARMLTEAAEaEGSHVVAVLLNRNYGQHSAIMAGFSHVTGDLIITLDADL 103
                      8********66655555555566665.******************************************************************* PP

                      EE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SSEEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHH CS
  Glycos_transf_2  91 epdpdwleklvealekdgadvvlgqrprifgetdeiernkrvgenerlyfkerkrslkgnlsfeigsaallrreal 166
                      + +p+ +++lv+++++ g+dvv   r  ++++ ++++         ++ ++  +r+++  + ++ +  +++rr ++
       CTQ30430.1 104 QNPPEEIPRLVAKADE-GYDVVGTVRQNRQDSIFRKTAS-------KMINRLIQRTTGKAMGDYGCMLRAYRRHII 171
                      ****************.9999999999999999988875.......567777788888888888888888888776 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   2.3e-18     1e-14       3     133 ..       9     153 ..       5     215 .. 0.78

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 2.3e-18
  Glyco_tranf_2_3   3 dlavlVptfneedvlgevlesll.aqey.pr.vevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvll 93 
                      +++v++p++ne+d l e+l+ +  a++  +r +e+ +++d+s+++ ++++ e+a+a +  +v+ v   rn g  +   a+  ++++v++dl++ 
       CTQ30430.1   9 KVSVVIPVYNEQDSLPELLRRTDaACATlGRqYEILLIDDGSSDDSARMLTEAAEAEGS-HVVAVLLNRNYGQHS---AIMAGFSHVTGDLIIT 98 
                      59*******************98688844667********************9999997.677777778766555...566************* PP

  Glyco_tranf_2_3  94 vDdDtvvePdtlkrllqffltpkvgavgtpvfllnrstl................v 133
                      +D+D    P+ ++rl++ + ++++++vgt + ++++s +                 
       CTQ30430.1  99 LDADLQNPPEEIPRLVAKA-DEGYDVVGTVRQNRQDSIFrktaskminrliqrttG 153
                      ******************9.************999884422234445555444440 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0     1e-09   4.6e-06       1      92 [.      11     103 ..      11     117 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1e-09
  Glyco_tranf_2_2   1 svviplraseerhyieervlqkakyy...deeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaD 91 
                      svvip++++++   + e +++          + e++++ddgSs++ +  +    ++++   +    ++ y++  a   G+s+  +dl++ lDaD
       CTQ30430.1  11 SVVIPVYNEQDS--LPELLRRTDAACatlGRQYEILLIDDGSSDDSARMLTEAAEAEGSHVVAVLLNRNYGQHSAIMAGFSHVTGDLIITLDAD 102
                      89******9999..88888655444334599************************9998877888899*************************9 PP

  Glyco_tranf_2_2  92 c 92 
                       
       CTQ30430.1 103 L 103
                      6 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.3e-07   0.00058       1      81 [.      17     102 ..      17     109 .. 0.77
   2 ?   -3.5   0.0       3.5   1.6e+04       5      16 ..     169     180 ..     167     184 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.3e-07
  Glyco_tranf_2_4   1 rneadiLpefla....hhlalgfd.rilvydndstDgtrailkelpevkllhvdksy.ederrqvellkallaryaeadwvlvvDaD 81 
                      +ne+d Lpe l+    +  +lg++ +il++d++s+D+++++l e +e++  hv+    ++ + q++++ a +  +  +d ++++DaD
       CTQ30430.1  17 YNEQDSLPELLRrtdaACATLGRQyEILLIDDGSSDDSARMLTEAAEAEGSHVVAVLlNRNYGQHSAIMAGFS-HVTGDLIITLDAD 102
                      58899999999866655567999746******************98888777666551334444667777664.4699********9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.5
  Glyco_tranf_2_4   5 diLpeflahhla 16 
                      +i+ ++l +h++
       CTQ30430.1 169 HIIDAMLNCHER 180
                      899999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2464.93
//
Query:       CTQ30431.1  [L=380]
Description: uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-132  442.5   0.0   1.4e-132  442.4   0.0    1.0  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    4.1e-09   36.1   0.0    6.2e-09   35.5   0.0    1.3  1  Aminotran_1_2    Aminotransferase class I and II
    8.1e-08   31.2   0.1    1.1e-07   30.8   0.1    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    4.8e-05   22.8   0.6    0.00012   21.5   0.6    1.6  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.032   13.0   0.0      0.063   12.0   0.0    1.5  1  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain


Domain annotation for each model (and alignments):
>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  442.4   0.0    4e-136  1.4e-132       3     361 .]      14     375 ..      12     375 .. 0.97

  Alignments for each domain:
  == domain 1  score: 442.4 bits;  conditional E-value: 4e-136
                      HHHHHHHHHHHHTSS-SSSSHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTT CS
  DegT_DnrJ_EryC1   3 keeeleaveevlksgwltsgpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdt 96 
                      ++ el+a++evl sgw+t+gp+++++E+af++ +g++haiavss+t ++h++L+alg+gpgdeVI+ps t+v+t n++  lga+pv++Dvd d 
       CTQ30431.1  14 GDAELAALREVLASGWITTGPKNQALEAAFCQLTGNRHAIAVSSATGGMHVTLMALGIGPGDEVITPSQTWVSTLNMICLLGATPVMIDVDNDN 107
                      68899***************************************************************************************** PP

                      SSB-GGGCGGG--TTEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT-EETTEECCCSSSEEEEE-BTTSSS-SSS-EEEEESTHHH CS
  DegT_DnrJ_EryC1  97 ynidpaaieaaitertkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGatykgkkvGalgdaavfSFyptKnlttGeGGavvtndeel 190
                      ++i+p+a+eaait+rtkaI+pVh++G++ad+da++a+ ++hg+ vieDaAhA G++ykg++vG  g +a+fSF++ Kn+t++eGG++vt+d+el
       CTQ30431.1 108 LMITPDAVEAAITSRTKAIVPVHYAGAPADIDAIRAVGERHGISVIEDAAHAAGTHYKGRHVGWQG-TAIFSFHAIKNMTCAEGGLIVTDDDEL 200
                      ****************************************************************99.89************************* PP

                      HHHHHHHHBTTCECCTCSSCECCS.......S---B-B-BHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTCCCCEESCGGTTSSSEEESC CS
  DegT_DnrJ_EryC1 191 aekarvlrnhGlkrkaekryvgev.......elGynyrlteiqAAiglaqLerldelvarRreiaelykeeLaelegtaelttpketkkhawhl 277
                      a+++r l+ hGl ++a +r+++         ++G++y+l +i+AA+ l+qLe+l++ ++rR+eia++y +eLa+ + + +l +p ++++hawhl
       CTQ30431.1 201 ASRIRSLKFHGLGVDAYDRQTHGRapqaeviTPGFKYNLADINAALALVQLEKLSHANQRRTEIAQRYLRELADTP-FKPLSVPAWEHQHAWHL 293
                      **************7777777766799***********************************************99.67********99***** PP

                      EEEEEHCCHH.HCHHHHHHHHHHCCEE-B-SGSCHGGGSCCHHHHHHCCCHC-HHHHHHHHHEEEEEGGTTGSHHHHHHHHHHHH CS
  DegT_DnrJ_EryC1 278 yavlveeeae.vkrdelvealkeegigtrvhypnplhrqpvyaerkeeasgdlpnaerlaervlsLplypelteedvdrVvealr 361
                      ++++v+e a+ ++rd+l+e+lk++gigt +h+ +++h+q++y+er+ e s  lpn+e+ ++r++sLpl p++t++dv+rV++alr
       CTQ30431.1 294 FIIRVDEAACgISRDALMEKLKAMGIGTGLHF-RAAHTQKYYRERFPEVS--LPNTEWNSARICSLPLFPDMTDDDVTRVISALR 375
                      ********************************.7************8865..******************************986 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   1.7e-12   6.2e-09      47     194 ..      37     162 ..      19     208 .. 0.91

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 1.7e-12
                    HHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTH CS
  Aminotran_1_2  47 peleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvryplyseedfhldlealeealkea 142
                    ++le a +++ g       +r  a+ v+s +g + ++l++l  + pgde++ p++t+ s  n++ l g++ v +   + ++  ++ +a+e+a+++ 
     CTQ30431.1  37 QALEAAFCQLTG-------NRH-AIAVSSATGGMHVTLMALG-IGPGDEVITPSQTWVSTLNMICLLGATPVMID-VDNDNLMITPDAVEAAITS- 121
                    688999999999.......677.*******************.********************************.55999**************. PP

                    HCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCB CS
  Aminotran_1_2 143 pegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfv 194
                         +tk i+   p +  G+ a+ + ++++    +++++ ++ D a+a++ 
     CTQ30431.1 122 -----RTKAIV---PVHYAGAPADIDAIRAV---GERHGISVIEDAAHAAGT 162
                    .....999999...89999999999999999...9*************9886 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1     3e-11   1.1e-07      51     183 ..      33     165 ..      30     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 3e-11
                      -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTT.S-TTEEEEEESTSSHHHHHHHHHTHHH.TTCEEEEEST.TSHHHHHHHCCTTEEEE CS
  Cys_Met_Meta_PP  51 nptrsvleeriaaLeggeaalavssGmaAiaaailal.lkaGdeivvsddlYggtqrllkkvlkk.lgievkfvdt.sdleelekaikentklv 141
                       p +++le++ ++L g  +a+avss ++ ++++++al +  Gde+++ ++ + +t +++  +    + i+v+  +    ++++e+ai+++tk++
       CTQ30431.1  33 GPKNQALEAAFCQLTGNRHAIAVSSATGGMHVTLMALgIGPGDEVITPSQTWVSTLNMICLLGATpVMIDVDNDNLmITPDAVEAAITSRTKAI 126
                      6999********************************96788***************9987765444999999988735789***********98 PP

                      EEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS- CS
  Cys_Met_Meta_PP 142 ylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqr 183
                          p       +Di +i ++   +g+ v+ D++ a++   +
       CTQ30431.1 127 V---PVHYAGAPADIDAIRAVGERHGISVIEDAAHAAGTHYK 165
                      5...666666678********************999997665 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.6   3.3e-08   0.00012      33     237 ..      35     218 ..      29     289 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.3e-08
                      HHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH-.-TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTT.TBE-HHHHHHHS--S-TT CS
  Beta_elim_lyase  33 tvnrLedavaelfgkeaalfvpqGtaAnsillkill.qrgeevivtepahihfdetgaiaelagvklrdlknkea.Gkmdlekleaaikevgah 124
                      + ++Le+a+++l+g  +a+ v + t++ ++ l++l   +g+evi   p+ +   +   i  l g++++ ++ +++   ++++++eaai+ +   
       CTQ30431.1  35 KNQALEAAFCQLTGNRHAIAVSSATGGMHVTLMALGiGPGDEVIT--PSQTWVSTLNMI-CLLGATPVMIDVDNDnLMITPDAVEAAITSRT-- 123
                      5689******************************98899999985..666777766666.55666677777666525679**********44.. PP

                      S-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-EEEEE-HH....H CS
  Beta_elim_lyase 125 eekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvGgvlafrddeledy 218
                          k+i+    +++ +G +   + +++++a+ +++gi ++ D+A  a          +   ++  ++++ + K++++  Gg+++++dd     
       CTQ30431.1 124 ----KAIVP---VHY-AGAP---ADIDAIRAVGERHGISVIEDAAHAAGTH---YKGRHVGWQGTAIFSFHAIKNMTCAEGGLIVTDDD----E 199
                      ....44432...333.3655...56667777889**********9766554...33333345888899*********************....7 PP

                      HHHHHHHHHHHT---SSTH CS
  Beta_elim_lyase 219 laerveqrkylggglrqag 237
                      la+r++  k +g g + ++
       CTQ30431.1 200 LASRIRSLKFHGLGVDAYD 218
                      7788777777776665444 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.7e-05     0.063      57     147 ..      24     116 ..       5     168 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.7e-05
                 GGBBTTTTBTHHHHHHHHH.HHHCT-SEEEEESSHHHHHHHHHHHHH--TTEEEEEESS--HHHHHHHHHS-EEEEEE--E.B-TTS-BE--- CS
    OKR_DC_1  57 eLgdLldheGaikeaqkya.arvfgadksyfvvnGTsssnkvvlnavltpgdlvlvdRNcHKSiehalvlsgatPvylepe.rnalgiiggid 147
                  L +  + +G+ ++a + a  ++ g  ++  v   T +   +++   + pgd v+ +  +  S  + + l gatPv +  + +n +  +  ++
  CTQ30431.1  24 VLASGWITTGPKNQALEAAfCQLTGNRHAIAVSSATGGMHVTLMALGIGPGDEVITPSQTWVSTLNMICLLGATPVMIDVDnDNLMITPDAVE 116
                 566666778888888776624555555555555566655666666679*******************************99455443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2886.45
//
Query:       CTQ30432.1  [L=168]
Description: putative phenolic acid decarboxylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-86  288.2   0.1    1.4e-86  288.0   0.1    1.0  1  PA_decarbox  Phenolic acid decarboxylase (PAD)
     0.0012   18.7   0.0     0.0016   18.3   0.0    1.2  1  MoaF         MoaF N-terminal domain
  ------ inclusion threshold ------
      0.022   14.4   0.2      0.029   14.0   0.2    1.2  1  MoaF_C       MoaF C-terminal domain


Domain annotation for each model (and alignments):
>> PA_decarbox  Phenolic acid decarboxylase (PAD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.0   0.1   2.3e-90   1.4e-86       1     157 [.      10     166 ..      10     167 .. 0.99

  Alignments for each domain:
  == domain 1  score: 288.0 bits;  conditional E-value: 2.3e-90
  PA_decarbox   1 lsefvGkhliytydnGweyelyvknektidyrihsGlvggrwvkdqeveivrlaedvykvswtePtGtdvslavnleekvlhGviffPrwveeepekt 98 
                  ls+f+Gkhl+ytydnGw+ye+yvkn +t+dyrihsG+vg+rwvkdqe++ivr++e++yk+swtePtGtdvsl+vnl +k +hG+iffPrw++++pekt
   CTQ30432.1  10 LSGFIGKHLVYTYDNGWNYEIYVKNGHTLDYRIHSGIVGNRWVKDQEAYIVRVGESIYKISWTEPTGTDVSLIVNLGDKLFHGTIFFPRWIMNNPEKT 107
                  789*********************************************************************************************** PP

  PA_decarbox  99 vcfqndhidlmeayrdagptyPkevvdefatitfledagkddeeviavapeelpedyaa 157
                  +cfqndhi+lm++yrdagp+yP+ev+defatitf++d+g+d++evi+++++elp+d++a
   CTQ30432.1 108 ICFQNDHIPLMNSYRDAGPAYPTEVIDEFATITFIRDCGADNDEVINCPASELPADFPA 166
                  *********************************************************97 PP

>> MoaF  MoaF N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.8e-07    0.0016      23      97 ..      12      88 ..       3      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.8e-07
                TTTT-EEEEEETTEEEEE...EETTEEEEEE....TTTTEEEEEE-EEEECCTTEEEEEEEETTSTTEEEEEEEETTTT CS
        MoaF 23 dLaGrtltlalengatieheffdadtlrWte....eekeesgeaeyeatevregiYfvdflkkereaesvslvldlrtg 97
                   G++l  +++ng+++e+ + + +tl+++      ++    ++e+ +++v e iY + +++++     vsl+++l ++
  CTQ30432.1 12 GFIGKHLVYTYDNGWNYEIYVKNGHTLDYRIhsgiVGNRWVKDQEAYIVRVGESIYKISWTEPTGT--DVSLIVNLGDK 88
                5679***************************8887666667788888999*************965..9*****99765 PP

>> MoaF_C  MoaF C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   4.9e-06     0.029       7      69 ..      13      76 ..       7     105 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.9e-06
                TTTEEEEEEECTTEEEEEEE-SSSEEEEEEEESTTTT-E.EEEEEEEEEEETTEEEEEEEETTT CS
      MoaF_C  7 LiGkrvlyrYsakeaYeHiYlneetytWqclaGeekgla.dtdeckvlkladelylfvwrEkvi 69
                 iGk+ +y+Y +   Ye    n +t+ ++  +G   +     +e+ ++++ +++y + w+E   
  CTQ30432.1 13 FIGKHLVYTYDNGWNYEIYVKNGHTLDYRIHSGIVGNRWvKDQEAYIVRVGESIYKISWTEPTG 76
                79**************95555778999999999865554044567889************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1360.17
//
Query:       CTQ30433.1  [L=286]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-20   73.0   5.8    2.1e-20   73.0   5.8    2.2  2  LysR_substrate  LysR substrate binding domain
    6.3e-17   61.3   1.0    1.4e-16   60.2   1.0    1.6  1  HTH_1           Bacterial regulatory helix-turn-helix protein


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.23     2e+03     143     162 ..      39      58 ..      31      79 .. 0.72
   2 !   73.0   5.8   2.3e-24   2.1e-20       2     192 ..      90     270 ..      89     285 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.23
                     HHHHHTTS-BEEEEGGGHHC CS
  LysR_substrate 143 lalvaaGlGiallprsavrd 162
                     lal +  lG+all  s  r+
      CTQ30433.1  39 LALLQERLGVALLAPSGRRA 58 
                     56777778888887766554 PP

  == domain 2  score: 73.0 bits;  conditional E-value: 2.3e-24
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gep 95 
                     +g r rL + + + + r++l  +l++f++ryP+ +++l+e   +   +  a+ e+D+ +++++++ +g + + L++  +++va++dhpLa+   p
      CTQ30433.1  90 NGARTRLDLVVDSIFPRQRLFAILRQFQQRYPQTQVRLTEVLENLDDESAARTEADVMVLTRRQDITG-RGEWLMNIDFIAVAHRDHPLAAlDGP 183
                     67899*************************************98888999999***************.***********************99* PP

                     ECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEEET CS
  LysR_substrate  96 vsledLadeplilleegsglrdlledalreaglkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvyrk 189
                     ++ ++La +pl+             d  +  g++pr a+++++++a++++v+  +G+++lp+  +r++l++g l+ lpl++ + +  +l+l++++
      CTQ30433.1 184 LEDSALAPWPLVRIA----------D-QGGDGQAPRDAWTFSTIDAAIDAVMYQVGFGWLPEERIRPHLDQGVLKRLPLSHGARRaTPLHLIVKR 267
                     *************33..........2.35668888899*******************************************999999*****999 PP

                     TCC CS
  LysR_substrate 190 gre 192
                     +  
      CTQ30433.1 268 DLA 270
                     854 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   1.0   1.5e-20   1.4e-16       1      60 []       6      65 ..       6      65 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 1.5e-20
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                l+q +l+++v+e gsf+rAAee + sq++vs  ++ L e+lgv L+  +gr+++LT+aGe
  CTQ30433.1  6 LEQWALLEKVVELGSFARAAEETNRSQSSVSYNLALLQERLGVALLAPSGRRAVLTPAGE 65
                68999******************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2182.29
//
Query:       CTQ30434.1  [L=522]
Description: nickel transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-86  289.1   0.2    5.9e-86  288.8   0.2    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.8   0.2   3.3e-90   5.9e-86       2     369 ..      66     431 ..      65     438 .. 0.94

  Alignments for each domain:
  == domain 1  score: 288.8 bits;  conditional E-value: 3.3e-90
                 EEESSEEEEEEEETTTTEEEEEE-TT-B-TTSSB-SHHHHHHHHHHHHTGGGHCTTHHHHHCTCTEEEEEEEETTEEEEEESSETTTTTTHCHHHHHHH CS
   SBP_bac_5   2 vvpaLAeswwevsdDgktytfkLRkgvkFsDGtpltAeDvvfsferlldpdtasgyaslleedqdikkveavddytvrftlkkpnalfltllaavpasi 100
                 v+p+LA++ w  s+Dgkt+ f+LR+++ Fs+G+p++A++ +++f+ +l + +++ +  l++   +i++v a+  +++++tlk+++a++l+ la + +  
  CTQ30434.1  66 VQPWLATR-WRHSADGKTWWFTLRDDLAFSNGEPFNAQAAAANFQAVLANRQRHAWLELAN---QITDVRALSATELQITLKSAYAPLLQELALPRPFR 160
                 79******.7**********************************************99995...********************998777777777777 PP

                 GCCHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEE....ESTTCCTHCHHHHHTTE CS
   SBP_bac_5 101 akkaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddv....aepppsdieqlkeakgl 195
                 + +     d  ++   ++p+gtGP++l++ + +q+ vl+rn+ Yw g+kp+l +i++kvipd+++ra+a+++Geid        +p++  e+++  +g+
  CTQ30434.1 161 FIAPSQFIDGGTARGIKAPIGTGPWRLASSQLNQRDVLVRNERYW-GRKPALQQITIKVIPDATSRAVAFETGEIDMLygdeGLLPLDTFERFRHHPGY 258
                 777778899999*********************************.*****************************777666566778888888999999 PP

                 EEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHHHTT-BCSSTSCEET CS
   SBP_bac_5 196 kvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLkeaGykdgdggglre 294
                    + s+++++ +la+N ++ p + ++vR+Al+yA+D++++v+ vl+g++++a++l++ps+p+a+++ +p    ydp+kA++lL++aG+++  g+  r+
  CTQ30434.1 259 VA-RLSAPAETVMLALNASQGPTREQAVREALNYAVDKQTLVDSVLYGTQQVADTLFAPSVPYAPQDLTPR--RYDPTKARALLEQAGWQQLEGQPWRQ 354
                 98.******************************************************************98..67********************9999 PP

                 C...EEEEEEEEETTSHHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHH CS
   SBP_bac_5 295 k...klkltlllasgspaekaiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpf 369
                 k   +l + l++ ++++++k +ae+iq++l+++G++v++ + +  +  ++r+++g f mi+ + ++ + dp++fl+++
  CTQ30434.1 355 KagqPLAIELAFIGTDALAKSMAEIIQANLRQVGVQVTLVGEEE-SSIYARQREGRFGMIFNRTWGAPYDPHAFLSSM 431
                 99****************************************98.8888*************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3771.81
//
Query:       CTQ30435.1  [L=314]
Description: nickel transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-43  147.4  10.9    3.7e-43  147.4  10.9    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne
  ------ inclusion threshold ------
      0.021   15.4   0.4      0.065   13.8   0.4    1.8  1  Renin_r       Renin receptor-like protein


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.2      0.31   2.8e+03     139     139 ..      33      33 ..       2     115 .. 0.53
   2 !  147.4  10.9   4.1e-47   3.7e-43       2     185 .]     117     308 ..     116     308 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.31
  BPD_transp_1 139 t 139
                   +
    CTQ30435.1  33 D 33 
                   1 PP

  == domain 2  score: 147.4 bits;  conditional E-value: 4.1e-47
  BPD_transp_1   2 illGilaalnrnkkldkllrpliivllslPsfvlaillvlvf.........vilsilghlilpviillllsaapyvrlirraalrslpkdlveaara 89 
                   ++lGi+aa++r +  d+++r + +++ s+P f+la+llv++f         +  ++++hlilp++ ++++s+a+ +rl+r+++l++ ++ +v  ar+
    CTQ30435.1 117 LPLGIWAARHRDRLPDYIVRLIAFLGVSMPNFWLAFLLVMLFsvhlqwlpaMGYGDWQHLILPAVSIAFMSLAINARLLRASMLDAASQRHVIWARL 213
                   79*************************************************999******************************************* PP

  BPD_transp_1  90 lGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseisnggvlalviavlllnlvadilqrlldprvrk 185
                   +G+s +q+ r+++l+na  p++t +++ +g l+gg++++e +++wpG+g+  ++ai ++dy+ i+   +l++v +++l nl++d+l+++ldpr+r+
    CTQ30435.1 214 RGLSARQVERRHILRNATLPVVTAMGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQ-CFTLMMVTVFVLANLAVDVLNAALDPRLRR 308
                   *****************************************************************.***************************995 PP

>> Renin_r  Renin receptor-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4   7.3e-06     0.065      40      81 ..     263     304 ..     251     306 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.3e-06
     Renin_r  40 klnlakkyssdYpaiFniiLwlvvvlvlaliaivvalasmdP 81 
                 ++ ++  ++ dYp+i    L++v v+vla +a+ v  a +dP
  CTQ30435.1 263 RYAVSAIFNRDYPVIQCFTLMMVTVFVLANLAVDVLNAALDP 304
                 57888999***************************9999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2408.27
//
Query:       CTQ30436.1  [L=277]
Description: nickel transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-27   95.9  10.4    2.4e-27   95.9  10.4    2.1  3  BPD_transp_1  Binding-protein-dependent transport system inne
     0.0085   16.1   0.8     0.0085   16.1   0.8    3.1  2  OppC_N        N-terminal TM domain of oligopeptide transport 
  ------ inclusion threshold ------
        1.3    8.5   5.2       0.59    9.6   2.8    1.6  2  DUF3169       Protein of unknown function (DUF3169)


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.4      0.29   1.7e+03     105     120 ..      13      28 ..       6      34 .. 0.59
   2 ?   -0.1   0.1      0.11   6.7e+02     154     172 ..      67      92 ..      47      99 .. 0.60
   3 !   95.9  10.4     4e-31   2.4e-27       1     183 [.      89     271 ..      86     273 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.29
  BPD_transp_1 105 nalppiitglilafgg 120
                   +a+ +i+ ++++a+g+
    CTQ30436.1  13 LAMLVIALLAVIAIGS 28 
                   4555555555555554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.11
  BPD_transp_1 154 s.......nggvlalviavlllnlva 172
                   +        g+v a++++vll+ l++
    CTQ30436.1  67 LlaatrvsLGAVMACLLLVLLIGLAV 92 
                   33333444566666666666666655 PP

  == domain 3  score: 95.9 bits;  conditional E-value: 4e-31
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g+ +G  a+   +++ d+ l+++ ++++++P+ +l +++v      ++lg++ +  +++++l ++a+y+r++r+ +++ ++++++ aar+ Gas w+
    CTQ30436.1  89 GLAVGGCAG-LLGGRADRGLMRIAELFMTFPTSILSFFMV------GVLGTGLTNvILAIALSHWAWYARMVRNLVVSLRQREFILAARLSGASQWR 178
                   566777777.99****************************......*********99**************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqrlldprv 183
                   +f  ++  +++p+++ ++ l +g+++ + + ++flg    lg    +a++g +++ +           +++ lal i+v+++nl+ d+l + ldp +
    CTQ30436.1 179 LFSDHLAGAVIPSLLVLASLDIGHMMLHVAGMSFLG----LGVSAPTAEWGVMINDARqyiwtqplqmVWPGLALFISVMAFNLLGDALRDRLDPHL 271
                   ************************************....***************9999***********************************986 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.8   1.4e-06    0.0085      19      51 .]      14      48 ..      11      48 .. 0.91
   2 ?   -0.2   1.1      0.16   9.8e+02      16      31 ..      77      92 ..      60     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.4e-06
      OppC_N 19 glvilllllliaifaPliaPydp..qdliqnllpP 51
                ++ +++ll++iai   ++ P+dp   dl q+llpP
  CTQ30436.1 14 AMLVIALLAVIAIGSGWWLPWDPaaIDLQQRLLPP 48
                789********************98777778***9 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.16
      OppC_N 16 Avvglvilllllliai 31
                Av +  +l+ll+ +a+
  CTQ30436.1 77 AVMACLLLVLLIGLAV 92
                6666677777777665 PP

>> DUF3169  Protein of unknown function (DUF3169)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.8   9.9e-05      0.59       7      71 ..      82     143 ..      75     164 .. 0.71
   2 ?   -3.4   0.0      0.95   5.7e+03      52      69 ..     237     257 ..     207     262 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 9.9e-05
     DUF3169   7 fillmliggliGgiiGfllgafeaekgleelsaalkelllligskilpllli...iavlvviisvvfl 71 
                 ++l++lig  +Gg++G l+g  ++          ++el++++ + il+++++    + l+ +i+ + l
  CTQ30436.1  82 LLLVLLIGLAVGGCAGLLGGRADRG------LMRIAELFMTFPTSILSFFMVgvlGTGLTNVILAIAL 143
                 4677888888888888888776444......34589999999999****9988775555555553333 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.95
     DUF3169  52 ilpllli...iavlvviisvv 69 
                 + pl ++   +a++++++++ 
  CTQ30436.1 237 TQPLQMVwpgLALFISVMAFN 257
                 345555666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.19s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2240.39
//
Query:       CTQ30437.1  [L=254]
Description: nickel transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-22   78.8   0.0    7.4e-22   78.3   0.0    1.2  1  ABC_tran  ABC transporter
    0.00015   21.7   0.1    0.00024   21.0   0.0    1.5  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    0.00053   19.5   0.0    0.00087   18.8   0.0    1.4  1  SMC_N     RecF/RecN/SMC N terminal domain
     0.0041   17.4   0.6      0.021   15.1   0.6    2.0  1  AAA_22    AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0   1.6e-25   7.4e-22       2     136 ..      20     168 ..      19     169 .. 0.91

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 1.6e-25
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGGB-HHHCCHCEEEE-SS..--S-TTSBHHHH...........HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx...........xxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlkeqeleslrkeigvlpqe..pqlfpeltvren...........esde 83 
                 ++vs++l++g+++a++G++G+GKS  +++ +gll p    t+G++lldg +++   ++   + i+++ q+  + ++p  t++ +           + d+
  CTQ30437.1  20 SDVSFTLRRGQVLALLGSSGCGKSLTCAAALGLLPPgvrqTAGRVLLDGIPVHG--EQLRGATIATIMQNprSAFNPLQTMAAHaretcraagreTNDA 116
                 69********************************999999**************..8889999*******86666666666666788899999877777 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                  + +a++++gl++ +   +k+ p ++SgG+ qr+++a all++++++++DEpt
  CTQ30437.1 117 VLLAAMEEVGLDN-PRALLKRYPFEMSGGMLQRMMVALALLSRAPFIIADEPT 168
                 79*********99.888999999*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.51   2.3e+03       3      14 ..      33      44 ..      31      74 .. 0.85
   2 !   21.0   0.0   5.3e-08   0.00024     230     302 ..     134     204 ..      52     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.51
      AAA_21  3 vliGpNgsGKSn 14
                +l G  g+GKS 
  CTQ30437.1 33 ALLGSSGCGKSL 44
                79999*****95 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 5.3e-08
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllell.kelsrngaQviltTHSplll 302
                  ++ ++e+S G+++   +++all+++   ++++ DEp + L+  +++r+l+ll ++ +r+g  ++l+TH+  ++
  CTQ30437.1 134 LKRYPFEMSGGMLQRMMVALALLSRA---PFIIADEPTTDLDAIAQARILDLLaDIVARRGLGLLLVTHDMGVV 204
                 567899*******9989999999999...9***********************999999**********98776 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.9e-07   0.00087      25     212 ..      30     214 ..       7     222 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.9e-07
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkke 122
                 ++ a++G+ G+GKs  + A    LG      +r++  + l+     +++++  a+++ +++n+ ++       ++  +++  + + + +  g+e + + 
  CTQ30437.1  30 QVLALLGSSGCGKSLTCAAA---LGLLPP-GVRQTAGRVLLDGiPVHGEQLRGATIATIMQNPRSA-------FNPLQTMAAHARETCRAAGRETNDAV 117
                 567899********999998...776555.89999999999999899999*********9999999.......44444444444444455555555555 PP

                 HHHHHHCTT-STT.........CS-HH..HHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHHHCCC-SCE CS
                 xxxxxxxxxxxxx.........xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 123 vsellesagiske.........lLSgG..ektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislreemlekadkl 208
                 +   +e++g++           ++SgG  ++ +valaLl      ++ap+ + De    LD+   +++ +ll    ++    ++ ++++ +++++  + 
  CTQ30437.1 118 LLAAMEEVGLDNPrallkrypfEMSGGmlQRMMVALALL------SRAPFIIADEPTTDLDAIAQARILDLLAdiVARRGLGLLLVTHDMGVVARLAHH 210
                 555555555554445555555579***555566666665......99********************99999833344557888888888887777666 PP

                 EEEE CS
                 xxxx RF
       SMC_N 209 vgvt 212
                 v v+
  CTQ30437.1 211 VTVM 214
                 6665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.6   4.6e-06     0.021       4     129 ..      28     198 ..      26     207 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.6e-06
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee...............erpevv.fvtlpsst.....sskdllrellralglelka........... 70 
                 + ++l++ G sG+GK+++++  l  l+    ++                ++++++  ++ p s      + +  +re +ra g+e+++           
  CTQ30437.1  28 RGQVLALLGSSGCGKSLTCAAALGLLPPGVRQTAgrvlldgipvhgeqlRGATIAtIMQNPRSAfnplqTMAAHARETCRAAGRETNDavllaameevg 126
                 57899**************99999887665555579999999999999833333343333333345444555556666666666666677777777777 PP

      AAA_22  71 ...........erlsseellealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvG 129
                            +   s  +l+++  al         +++i DE    l+   ++++l  L +++   r g+ l+Lv 
  CTQ30437.1 127 ldnprallkryPFEMSGGMLQRMMVALA---LlsrAPFIIADEPTTdLDaiaQARILDLLADIVA--RRGLGLLLVT 198
                 7776688855333333333344444444...3444899999998888877766999999999998..9999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2161.61
//
Query:       CTQ30438.1  [L=263]
Description: nickel transporter subunit; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-33  114.3   0.0    7.3e-33  114.0   0.0    1.1  1  ABC_tran         ABC transporter
    1.4e-06   28.6   0.3    5.5e-06   26.7   0.3    1.8  1  AAA_22           AAA domain
    1.1e-05   25.4   0.4     0.0022   17.9   0.2    2.1  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    0.00095   19.1   0.0     0.0023   17.9   0.0    1.6  1  RsgA_GTPase      RsgA GTPase
     0.0031   17.9   2.4     0.0063   16.9   2.3    1.6  1  AAA_16           AAA ATPase domain
     0.0043   16.8   0.3        1.2    8.8   0.1    2.2  2  IstB_IS21        IstB-like ATP binding protein
     0.0094   15.3   0.5      0.016   14.6   0.5    1.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.011   15.7   2.3      0.062   13.2   0.0    2.2  2  NACHT            NACHT domain
      0.012   15.1   0.1       0.28   10.6   0.1    2.0  2  SMC_N            RecF/RecN/SMC N terminal domain
      0.025   14.7   0.0      0.044   13.9   0.0    1.5  1  MMR_HSR1         50S ribosome-binding GTPase
      0.025   14.1   2.9       0.26   10.8   2.9    2.4  1  AAA_25           AAA domain
       0.03   14.1   0.0      0.056   13.2   0.0    1.4  1  AAA_29           P-loop containing region of AAA domain
      0.041   14.3   0.0       0.15   12.5   0.0    1.9  2  AAA              ATPase family associated with various cellul
       0.06   12.5   0.1       0.11   11.6   0.1    1.6  1  NB-ARC           NB-ARC domain
      0.089   12.5   0.5       0.46   10.2   0.0    2.0  2  Sigma54_activat  Sigma-54 interaction domain
       0.17   12.1   0.2        0.7   10.2   0.2    2.0  1  SbcCD_C          Putative exonuclease SbcCD, C subunit
        0.2   12.2   0.2        0.5   10.9   0.2    1.8  1  AAA_18           AAA domain
       0.22   11.3   0.1       0.43   10.3   0.1    1.4  1  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.24   11.8   0.0       0.42   11.0   0.0    1.4  1  RNA_helicase     RNA helicase
       0.28   10.3   0.0       0.33   10.0   0.0    1.2  1  G-alpha          G-protein alpha subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   0.0   8.2e-36   7.3e-33       1     136 [.      20     171 ..      20     172 .. 0.95

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 8.2e-36
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH...........HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx...........xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren...........esde 83 
                 l+ ++l + +ge+va++G++G+GKStL+++l gl++p+ G+i ++g++l     + +  +r+ i+ ++q+  + ++p++tvre             +++
  CTQ30438.1  20 LHAIHLAIAPGETVALLGRSGCGKSTLARMLVGLETPQHGDIAWRGTPLAAlkgEAIGAFRRDIQLVFQDafSAVNPRKTVREIvseplrhllclSREA 118
                 67899********************************************9999999**************9999*********************8888 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++ ++ + l  ++l+ + ++++p+++SgGq qrv+laral+ +p+ll+lDE+ 
  CTQ30438.1 119 RARRVEEMLLAVDLAPSLLDKRPAQVSGGQLQRVCLARALAVRPQLLILDEAV 171
                 8888888888899999***********************************96 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.3   6.1e-09   5.5e-06       8     130 ..      33     202 ..      29     210 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 6.1e-09
      AAA_22   8 lvvtGesGtGKTtllrrlleql.deeakaee.................erpevvfvtlpsstsskdllrellralglelka.................. 70 
                 +++ G sG+GK+tl+r+l+    +++ ++++                 ++ ++vf ++ s  ++++  re++++  +   +                  
  CTQ30438.1  33 VALLGRSGCGKSTLARMLVGLEtPQHGDIAWrgtplaalkgeaigafrRDIQLVFQDAFSAVNPRKTVREIVSEPLR---Hllclsreararrveemll 128
                 5789*************987640455555559999999999999999766666666666666555554444444332...1223556669999999999 PP

      AAA_22  71 ........erlsseell.ealeqalrarav...ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvGt 130
                           ++  ++   +l++ + ara    ++lli+DEa   l+   ++e++  L++l+   +++++ +++ +
  CTQ30438.1 129 avdlapslLDKRPAQVSgGQLQRVCLARALavrPQLLILDEAVSnLDlllQAEIIALLKRLQA--QFDTACLFITH 202
                 999999995555566666***********9************999988888***********9..99999866544 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.011        10       3      22 ..      34      53 ..      33      80 .. 0.82
   2 !   17.9   0.2   2.4e-06    0.0022     234     302 ..     141     207 ..     115     208 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.011
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                +l G+ g+GKS+L + l +l
  CTQ30438.1 34 ALLGRSGCGKSTLARMLVGL 53
                799**********9999888 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 2.4e-06
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                 ++++S G+++  +l+ al+ ++    ll++DE  ++L+  l+++++ llk+l++  ++ +++ TH+  l+
  CTQ30438.1 141 PAQVSGGQLQRVCLARALAVRP---QLLILDEAVSNLDLLLQAEIIALLKRLQAqFDTACLFITHDLRLV 207
                 5688999999999999999999...99**********************999999***********9887 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.5e-06    0.0023      91     128 ..      21      59 ..       9      65 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.5e-06
                  HHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S CS
  RsgA_GTPase  91 eelkellkd.ktsvlvGqSGvGKStLinallpelelktg 128
                  ++++ +++  +t++l+G SG GKStL  +l++ ++ + g
   CTQ30438.1  21 HAIHLAIAPgETVALLGRSGCGKSTLARMLVGLETPQHG 59 
                  555556665599******************986665555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   2.3   7.1e-06    0.0063      13     144 ..      20     170 ..      17     200 .. 0.45

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.1e-06
      AAA_16  13 lsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy...sa.laqalareellrqlldeaesaeleawrekleeala. 106
                 l+a++ + +++ e v l G sG+GKs+l+r+l   le+       ++ d   +++p+       + a+ r + ++ + ++ + +++++ ++  e + + 
  CTQ30438.1  20 LHAIHLAIAPG-ETVALLGRSGCGKSTLARMLV-GLETP------QHGDIAWRGTPLaalKGeAIGAF-R-RDIQLVFQD-AFSAVNPRKTVREIVSEp 107
                 56666445554.89******************9.45544......45555555555533222233333.2.333444433.222333333322222222 PP

      AAA_16 107 ............................avpelagaea.....srllellkrll.allsrderplvlvlDdl 144
                                                            +    +l+r   a++    rp +l+lD++
  CTQ30438.1 108 lrhllclsreararrveemllavdlapsL--------LdkrpaQVSGGQLQRVClARALA-VRPQLLILDEA 170
                 33333333333333332333333322220........23333333333333333333333.44566666655 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0014       1.2      45      67 ..      28      50 ..      20      63 .. 0.85
   2 !    6.1   0.0    0.0092       8.2     105     151 ..     158     206 ..     133     214 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0014
   IstB_IS21 45 ekkenivllGpsGvGKshlaial 67
                +  e ++llG sG GKs la  l
  CTQ30438.1 28 APGETVALLGRSGCGKSTLARML 50
                56799**************9765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0092
   IstB_IS21 105 rllkvdllilDdl..gllpldqaeaellfeviekryerrsiiitsnlpf 151
                   ++++llilD+    l  l qae   l++ ++++++++ + it +l +
  CTQ30438.1 158 LAVRPQLLILDEAvsNLDLLLQAEIIALLKRLQAQFDTACLFITHDLRL 206
                 35789*******622355677999999*************999988765 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.5   1.7e-05     0.016      13      48 ..      21      56 ..      14      78 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-05
  Mg_chelatase 13 raleiaaaGgHnlllvGppGsGKtmlakrlpsllpp 48
                  +a+++a+a g  + l+G +G+GK+ la+ l +l +p
    CTQ30438.1 21 HAIHLAIAPGETVALLGRSGCGKSTLARMLVGLETP 56
                  7999**************************998665 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.9e-05     0.062       2      21 ..      32      51 ..      31      58 .. 0.91
   2 ?    2.1   0.6      0.19   1.7e+02      53     127 ..     107     202 ..      77     228 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.9e-05
                CEEEEC-TTTCHHHHHHHHH CS
       NACHT  2 lvilqGeaGsGKTtLlqkla 21
                +v+l G++G+GK+tL++ l+
  CTQ30438.1 32 TVALLGRSGCGKSTLARMLV 51
                899*************9886 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.19
                 -HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE...........................EEEE-STT-SS-TCH.........HHHHHCTTTTT--EEE CS
       NACHT  53 sladllfsqlpepaapvsevwavllelperlL...........................lilDglDelvtdlgqkekqpvrtlLselirkkllpeasll 124
                  l+ ll+    + a++v+e + + + l+ +lL                           lilD +   v+ l+   ++++  lL++l  +  + +a+l+
  CTQ30438.1 107 PLRHLLCLSREARARRVEE-MLLAVDLAPSLLdkrpaqvsggqlqrvclaralavrpqlLILDEA---VSNLDLLLQAEIIALLKRLQAQ--FDTACLF 199
                 4555555555555555555.444555555555555555555555555556666666665887743...3333332235777888777777..8888888 PP

                 EEE CS
       NACHT 125 ltv 127
                 +t 
  CTQ30438.1 200 ITH 202
                 875 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.09        81      26      41 ..      32      47 ..      21      54 .. 0.81
   2 ?   10.6   0.1   0.00031      0.28     118     205 ..     118     210 ..      79     223 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.09
                EEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxx RF
       SMC_N 26 ftaivGpNGSGKsnll 41
                  a++G+ G+GKs l 
  CTQ30438.1 32 TVALLGRSGCGKSTLA 47
                46899********885 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00031
                 E-HHHHHHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
       SMC_N 118 vtkkevsellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemleka 205
                 ++ + v+e+l  +++ ++       + SgG+ + v la  +A++   p  l +lDe  ++LD    +++  llk+ + +  +  + i+++ +++e+ 
  CTQ30438.1 118 ARARRVEEMLLAVDLAPSlldkrpaQVSGGQLQRVCLARALAVR---P-QLLILDEAVSNLDLLLQAEIIALLKRLQAQfdTACLFITHDLRLVERF 210
                 555566666666666666666666689****9999999998874...4.4889**********9999999999988855224456677777766665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   4.9e-05     0.044       2      22 ..      33      53 ..      32      89 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.9e-05
                EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge 22
                va++Gr+  GKStL + l+g 
  CTQ30438.1 33 VALLGRSGCGKSTLARMLVGL 53
                99****************984 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.9   0.00029      0.26      26      54 ..      23      51 ..      18     203 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00029
      AAA_25 26 vkgllpagelallaGapgtGKttlaldla 54
                ++  ++ ge+++l G++g+GK+tla  l+
  CTQ30438.1 23 IHLAIAPGETVALLGRSGCGKSTLARMLV 51
                5666889*****************96665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   6.2e-05     0.056      17      38 ..      25      46 ..      18      58 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.2e-05
      AAA_29 17 ieidlkgatlltGpsGsGKSTl 38
                + i + +++ l G+sG GKSTl
  CTQ30438.1 25 LAIAPGETVALLGRSGCGKSTL 46
                556777799************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00017      0.15       2      55 ..      34      92 ..      33     105 .. 0.74
   2 ?   -1.0   0.0       2.4   2.2e+03      52      67 ..     154     170 ..     113     200 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00017
                EEESSTTSSHHHHHHHHHHHH.....THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavakel.....gvefleisgsellskyvgesekkirelfkeake 55
                 l G  G+GK++la+ ++        ++    + ++ l  + +g+  ++i+ +f++a +
  CTQ30438.1 34 ALLGRSGCGKSTLARMLVGLEtpqhgDIAWRGTPLAALKGEAIGAFRRDIQLVFQDAFS 92
                689*************9987323333355566666666666778999999999998865 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.4
                 HHHHTS.TSEEEEEETG CS
         AAA  52 eakeka.kpsilfiDEi 67 
                  a++ a +p  l++DE+
  CTQ30438.1 154 LARALAvRPQLLILDEA 170
                 34555566888888885 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00012      0.11      22      41 ..      32      51 ..      23     213 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
                EEEEEESTTSSHHHHHHHHC CS
      NB-ARC 22 vvalvGmgGvGKttlakqil 41
                 val G+ G+GK+tla+  +
  CTQ30438.1 32 TVALLGRSGCGKSTLARMLV 51
                699*************9765 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00051      0.46      10      45 ..      18      53 ..      10      69 .. 0.82
   2 ?   -0.2   0.3      0.81   7.3e+02      96     119 ..     164     188 ..     159     193 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00051
                     HHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat 10 elleqikkvaktdlsvlitGesGtGKellaraihea 45
                     ++l+ i+ +++   +v ++G sG+GK++lar++   
       CTQ30438.1 18 RVLHAIHLAIAPGETVALLGRSGCGKSTLARMLVGL 53
                     566777778888899****************98655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.81
                      EEEEET.GGGS-HHHHHHHHHHHHH CS
  Sigma54_activat  96 tlfLDe.igelplelQekLlrvlqe 119
                       l LDe +++l+l lQ++++ +l++
       CTQ30438.1 164 LLILDEaVSNLDLLLQAEIIALLKR 188
                      5889987899*******99998875 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00078       0.7      62      89 ..     160     187 ..     131     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00078
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                  +++l++LDEA s+lD   +a++++ll+
  CTQ30438.1 160 VRPQLLILDEAVSNLDLLLQAEIIALLK 187
                 4689************999999999886 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00055       0.5       1      34 [.      33      64 ..      33     127 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00055
      AAA_18  1 IlltGtpGvGKttlakeLskrlgfgvnlrdvake 34
                ++l G +G+GK+tla+ L  ++    +++d+a+ 
  CTQ30438.1 33 VALLGRSGCGKSTLARMLVGLE--TPQHGDIAWR 64
                6799************997665..5555666655 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00048      0.43       3      25 ..      32      54 ..      30      59 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00048
   PduV-EutP  3 killiGkvgsGKttLtqalkgee 25
                 + l+G++g+GK tL++ l g e
  CTQ30438.1 32 TVALLGRSGCGKSTLARMLVGLE 54
                5789*************998765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00047      0.42       2      19 ..      34      51 ..      33      69 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00047
  RNA_helicase  2 wlyGpsgeGKStlakeLa 19
                   l G+sg+GKStla+ L+
    CTQ30438.1 34 ALLGRSGCGKSTLARMLV 51
                  589***********9954 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00037      0.33      26      51 ..      33      58 ..      23     135 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00037
                EEEEESTTSSHHHHHHHHHHHCS--- CS
     G-alpha 26 llllGqseSGKsTilkqlkllykkgf 51
                + llG s++GKsT+ + l  l+++++
  CTQ30438.1 33 VALLGRSGCGKSTLARMLVGLETPQH 58
                789*************9998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 2215.92
//
Query:       CTQ30439.1  [L=132]
Description: DNA-binding transcriptional repressor, Ni-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-28   96.8   6.7    8.2e-28   96.4   6.7    1.2  1  NikR_C          NikR C terminal nickel binding domain
    1.7e-10   40.4   0.7    3.2e-10   39.6   0.7    1.5  1  RHH_1           Ribbon-helix-helix protein, copG family
  ------ inclusion threshold ------
      0.055   13.3   0.2      0.086   12.7   0.2    1.3  1  DUF503          Protein of unknown function (DUF503)
       0.32   10.9   1.8       0.47   10.4   0.8    1.9  2  VapB_antitoxin  Bacterial antitoxin of type II TA system, Vap


Domain annotation for each model (and alignments):
>> NikR_C  NikR C terminal nickel binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   6.7   1.8e-31   8.2e-28       2      75 ..      54     127 ..      53     129 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 1.8e-31
                 EEEEEEEETTSTTHHHHHHHHHHHHSSEEEEEEEEEESSSEEEEEEEEEE-HHHHHHHHHHHHTSTTEEEEEEE CS
      NikR_C   2 GvitivydhhqrelserltdiqheyhdliisslhvhldhdncLevivlkGeaeeikelaeklralkgVkhvklt 75 
                 +v+++vy+h++rel++rl  +qh++hdl +++lhvh++hd cLe+ vlkG+++e++++a+ ++a++gV+h++l+
  CTQ30439.1  54 AVLSYVYEHEKRELASRLVATQHHHHDLSVATLHVHISHDDCLEIAVLKGDMAEVQHFADDVIAQRGVRHGHLQ 127
                 8**********************************************************************997 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.7   7.1e-14   3.2e-10       1      39 []       3      42 ..       3      42 .. 0.97

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 7.1e-14
                EEEEEEEHHHHHHHHHHHHHHT.SSHHHHHHHHHHHHHHH CS
       RHH_1  1 rvsirldeellerLdelarrrg.rSrSelIReAlreyler 39
                rv+++ld++ll++Ld+l +rrg  +rSe++R+ lr++l +
  CTQ30439.1  3 RVTLTLDDDLLAALDALSARRGyHNRSEAVRDILRDALNQ 42
                8***********************************9976 PP

>> DUF503  Protein of unknown function (DUF503)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   1.9e-05     0.086      18      73 ..      63     117 ..      62     125 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.9e-05
      DUF503  18 eKRsvvkslieklrnrfnvSvaEvdeqdlwqraeigvavvsnsrahveevldkvlr 73 
                 eKR++  +l++  +++  +Sva +  + +++   + +av + + a+v++  d v++
  CTQ30439.1  63 EKRELASRLVATQHHHHDLSVATLHVHISHDDC-LEIAVLKGDMAEVQHFADDVIA 117
                 9*************************9999986.9*************99999875 PP

>> VapB_antitoxin  Bacterial antitoxin of type II TA system, VapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.8   0.00011      0.47       2      29 ..       3      33 ..       2      41 .. 0.71
   2 ?   -3.8   0.0       2.9   1.3e+04      22      27 ..      62      67 ..      58      67 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
                    XXXXXXXXXXXXX..XX.XXXXXXXXXXXXX CS
  VapB_antitoxin  2 rtnIeiDDeLlae..Ai.rltglktKrEaVn 29
                    r+++++DD+Lla   A+ ++ g++ ++EaV+
      CTQ30439.1  3 RVTLTLDDDLLAAldALsARRGYHNRSEAVR 33
                    9*********984224414555788888877 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.9
                    XXXXXX CS
  VapB_antitoxin 22 ktKrEa 27
                    ++KrE+
      CTQ30439.1 62 HEKREL 67
                    467775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1140.90
//
Query:       CTQ30440.1  [L=337]
Description: Magnesium transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-27   96.3   9.0    2.7e-27   95.6   9.0    1.4  1  MgtE      Divalent cation transporter
    3.4e-08   33.8   0.1      0.011   16.1   0.0    2.4  2  CBS       CBS domain


Domain annotation for each model (and alignments):
>> MgtE  Divalent cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   9.0     3e-31   2.7e-27       1     123 [.     206     327 ..     206     328 .. 0.99

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 3e-31
                 HHHHHHHHHHHHHHHHHHHHHHHHTTSS-GG.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-.CTSHHHHHHHHHHHHHHHHHH..HHHHHHHHHHT CS
        MgtE   1 iPvilglgGnlgaqlasristalhlgelekk.lkkvllkelrvvlllgvilgllifllalllgwslllalvvglalvlvllaaallilgvllplllwkl 98 
                 iP+++g+gGn g+q +s+++++++lge++ + + +v++ke+ + +l++++lgl+  l+a+++g  + ++l+v+l+lv++ l++a++   +++p++l+++
  CTQ30440.1 206 IPLLIGTGGNSGTQITSTLVRSMALGEVRLRdMGRVIRKEVSTSFLIALTLGLAGCLRAWMMGIGMEITLIVSLTLVCITLWSAIV--SSVIPMVLKRI 302
                 7***************************99999*****************************************************..*********** PP

                 TS-GGGSHHHHHHHHHHHHHHHHHH CS
        MgtE  99 glDPdnaaiPlltalgDllgtlllv 123
                 g+DP+++++P++++l D +g+++++
  CTQ30440.1 303 GIDPAVVSAPFIATLIDGTGLIIYF 327
                 ************************8 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.3e-06     0.011       2      53 ..      22      77 ..      21      79 .. 0.80
   2 !   15.2   0.1   2.5e-06     0.023       3      55 ..      87     138 ..      85     140 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.3e-06
                HHHSBSSCEEEETTSBHHHHHHHHH...HHT.S.SEEEEEETTTBEEEEEEHHHHHH CS
         CBS  2 gdimtrdvvtvppdttleealelmr...ekg.v.srlPVVdedgklvGivtlrDllr 53
                +++m++d++t+ +  +++ea e ++    ++ + ++++VV   +kl G ++ + ll+
  CTQ30440.1 22 AQYMRTDFITLQEHLSVHEAREHFIsqlASDdIpGQVFVVA-GKKLRGSLSVKKLLQ 77
                689********************87433233445899***4.447********9997 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.5e-06
                 HHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHHH CS
         CBS   3 dimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllral 55 
                 ++m + ++ v+pd+   +++ ++ e+g++ +PVV + g+lvG + ++ ++ +l
  CTQ30440.1  87 HLMDSCLFRVKPDDERQQVIAELSERGLDLVPVV-DKGELVGCLMEKEIAHLL 138
                 6677777899*************9999*999***.6999*******9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2567.29
//
Query:       CTQ30441.1  [L=397]
Description: putative oxidoreductase with FAD/NAD(P)-binding domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.2e-155  517.4   0.0   2.5e-155  517.2   0.0    1.0  1  HI0933_like    HI0933-like protein
    8.5e-11   41.6   0.7    8.4e-07   28.4   0.5    2.6  3  FAD_binding_2  FAD binding domain
    3.9e-10   39.8   2.2    0.00034   20.3   0.0    2.9  3  DAO            FAD dependent oxidoreductase
    2.3e-09   36.9   0.0    6.5e-09   35.4   0.0    1.8  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.6e-08   34.2   0.3     0.0023   17.2   0.0    2.4  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.5e-07   30.9   1.0    0.00022   20.4   0.1    2.6  3  GIDA           Glucose inhibited division protein A
      3e-06   26.9   0.0    4.9e-06   26.1   0.0    1.3  1  FAD_oxidored   FAD dependent oxidoreductase
    3.8e-06   27.0   1.0    9.3e-06   25.8   1.0    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      9e-05   23.0   0.2       0.13   12.9   0.1    2.4  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    0.00088   18.4   0.4      0.026   13.6   0.5    2.1  2  Lycopene_cycl  Lycopene cyclase protein
    0.00098   18.5   0.1        0.7    9.1   0.1    2.2  2  FAD_binding_3  FAD binding domain
  ------ inclusion threshold ------
      0.011   15.0   0.0       0.23   10.7   0.0    2.1  2  Amino_oxidase  Flavin containing amine oxidoreductase
      0.015   15.3   0.0      0.085   12.8   0.0    2.2  1  NAD_binding_9  FAD-NAD(P)-binding
      0.029   13.7   0.0      0.044   13.1   0.0    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.067   12.4   0.1       0.14   11.4   0.1    1.5  1  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  517.2   0.0  2.1e-158  2.5e-155       2     408 ..       5     392 ..       4     393 .. 0.98

  Alignments for each domain:
  == domain 1  score: 517.2 bits;  conditional E-value: 2.1e-158
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETT-SGGGEEES...STTTTHHHHHHS-HHHHHHHHHHTT--EEE-STT CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKilisGgGrcNvTnlseepeellsrypenpkflksalsrftnedlialveelgvelkeedsg 99 
                  d iv+G+GaAG+++A++a++ g+rVlll+++kk+grKil+sGgGrcN+Tn+++ep+++ls+   np+f+ksal+r+t++d+i+lv ++g++++e++ g
   CTQ30441.1   5 DAIVVGAGAAGMFCAAQAGQLGCRVLLLDNGKKPGRKILMSGGGRCNFTNMYVEPAAYLSQ---NPHFCKSALARYTQWDFIELVGKYGIAWHEKTLG 99 
                  89***********************************************************...********************************** PP

                  EEEETT.-CHHHHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-GGGT--SHHHHHHHHTT--EEEEEEES--E CS
  HI0933_like 100 rlFpvsdkaedivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiPklGstgkgyklaeqfghtivplrpalvpl 197
                  +lF+++ +ae+iv++ll+e+++ gv++rl++e+ sve++e+g +r+++ ++e+l ++klv+A+GGlS+P lG++++gyk+aeqfg++++p+r++lvp+
   CTQ30441.1 100 QLFCDD-SAEQIVNLLLAECEKGGVQIRLRSEILSVERDEQG-YRLQV-NGETLVTKKLVIASGGLSMPGLGASPFGYKVAEQFGLKVLPTRAGLVPF 194
                  ******.*****************************999998.*****.************************************************* PP

                  E--HHHH.HCGGGTT-EEEEEEE...ECTTEEEEEEEEE-SSEEESHHHHHHTTT-......-TT--EEEECSTTS-...HHHHHHHHHHHTTTSBHH CS
  HI0933_like 198 tlkeskl.klkelsGvslkavvlslkkkkkatekgellfThrGlsGpailqlSsyvakalekkeeetleidllPdldaeelkaalekekekeskkslk 294
                  tl++++l +l+ lsGvs+ ++++   +++++ ++++llfThrGlsGpa+lq+Ssy+      +++e ++++llPd+d   l+++l++++++++++slk
   CTQ30441.1 195 TLHKPLLeQLQVLSGVSVTSTIT---AENGTLFRENLLFTHRGLSGPAVLQISSYW------QPGEFVTVNLLPDCD---LDDFLNEQRSAHPNQSLK 280
                  ***666537899********997...89****************************......***************...****************** PP

                  HHHTTTS-HHHHHHHHHC..TTT-TTBGGG--HHHHHHHHHHHHSEEE--SEE--TTT-SEEEEEE-GGGB-TTT-BBTTSTTEEE-GGGBSEEE-TT CS
  HI0933_like 295 nalaellpkrlvevlleealieeedkklaqlskkelkklaealkaltvkvngteglrkaevTaGGVdlkevssktmeskkvpgLffaGEvlDvegvtG 392
                  n+la  lpkrlve+l++  +i  +d +l+ql+ +++++l+e+l+a++v++ngteg+r+aevT+GGVd++e+ss+tme++k pgL+f+GEv+Dv+g++G
   CTQ30441.1 281 NTLAMQLPKRLVECLQQLGQI--PDVTLKQLNVRDQQTLVETLTAWRVQPNGTEGYRTAEVTLGGVDTNELSSRTMEARKAPGLYFIGEVMDVTGWLG 376
                  *****************9777..999************************************************************************ PP

                  THHHHHHHHHHHHHHH CS
  HI0933_like 393 GynlqaAwasgyaAGk 408
                  Gyn+q+Aw+s++a+++
   CTQ30441.1 377 GYNFQWAWSSAWACAQ 392
                  **************98 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.5     7e-10   8.4e-07       1      44 [.       5      48 ..       5      57 .. 0.94
   2 ?   -2.0   0.0       1.2   1.4e+03     143     203 ..     110     163 ..     106     175 .. 0.58
   3 !   10.6   0.0   0.00018      0.22     369     405 ..     337     374 ..     239     380 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 7e-10
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S- CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGg 44
                   D+iV+G+G+AG+ +A++a + G +v++++++++ g  + +s+Gg
     CTQ30441.1  5 DAIVVGAGAAGMFCAAQAGQLGCRVLLLDNGKKPGRKILMSGGG 48
                   89*******************************999*****999 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.2
                    HHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----G CS
  FAD_binding_2 143 llarlvesarkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgGfg 203
                    ++  l+++++k gv+++ r e++++ ++++   G  ++   +g+  +++ k++v+a+gG +
     CTQ30441.1 110 IVNLLLAECEKGGVQIRLRSEILSVERDEQ---GYRLQ--VNGE--TLVTKKLVIASGGLS 163
                    666666666666666666666666655333...33333..3333..344566666666655 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00018
                    EEEES-EEEBET.TSBESTTEEESSBTEEE-STCE..ESS CS
  FAD_binding_2 369 qhytmgGvetde.ngrvldadgqpipGLYAaGeva..agg 405
                    +  t+gGv t+e ++r+   + +  pGLY +Gev+   g 
     CTQ30441.1 337 AEVTLGGVDTNElSSRT--MEARKAPGLYFIGEVMdvTGW 374
                    5789*******834555..888899**********54344 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   6.6e-07   0.00078       1      89 [.       5     103 ..       5     110 .. 0.65
   2 !   20.3   0.0   2.9e-07   0.00034     131     204 ..      97     163 ..      87     202 .. 0.74
   3 ?    0.2   0.0      0.38   4.5e+02     313     351 ..     359     396 ..     335     396 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6.6e-07
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSS......STHHSTH.......HHHHHHHHHHHHHHHHHHHHSSTTSEEEE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsgl......rylpeas.......elarlslealeelreleeelgididyrrt 84 
                 d +++G+G +G+++A ++ + g  V+ll+ g+ +g+      +g +          +             ++  l+++++  + el +++gi +  +  
  CTQ30441.1   5 DAIVVGAGAAGMFCAAQAGQLGcrVLLLDNGKKPGRKILMSGGGRCNFTNmyvepaA-----YlsqnphfCKSALARYTQWDFIELVGKYGIAWHEKTL 98 
                 789***************9999***********996555555555544443233332.....0333334577777777743335666778976655555 PP

                 EEEEE CS
         DAO  85 Gllsl 89 
                 G l++
  CTQ30441.1  99 GQLFC 103
                 55555 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 2.9e-07
                 TSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECTEEE.EEEEEEEE--GGGH CS
         DAO 131 llgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgverttpgen.daadavVnaaGaws 204
                 +lg lf++d     +++ ++ l++++e++Gv+i++++e+ ++e+ d+++++++   +ge+ ++ +++V+a G  s
  CTQ30441.1  97 TLGQLFCDD----SAEQIVNLLLAECEKGGVQIRLRSEILSVER-DEQGYRLQ--VNGETlVT-KKLVIASGGLS 163
                 567777777....66799************************77.56778883..33777566.78777777554 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.38
                 TTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHH CS
         DAO 313 pdglpligetpgvkglylatGhsghGltlapatGkllae 351
                  +gl +ige+  v g +  +++  +++++a+a++++l+e
  CTQ30441.1 359 APGLYFIGEVMDVTGWLGGYNF-QWAWSSAWACAQALVE 396
                 4678889996667788888888.9**********99876 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   5.4e-12   6.5e-09       2     110 ..       5     162 ..       4     192 .. 0.82
   2 ?   -3.1   0.0         3   3.5e+03     256     278 ..     342     369 ..     328     378 .. 0.66

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 5.4e-12
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.......................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias.......................................... 57 
                  d +v+G+G+AG+ +a +++q g++v+l+ ++g  +++++l+s   +    +  ++                                           
   CTQ30441.1   5 DAIVVGAGAAGMFCAAQAGQLGCRVLLL-DNGKKPGRKILMSGGGRCNFTNMYVEPaaylsqnphfcksalarytqwdfielvgkygiawhektlgql 101
                  789*************************.999999999999663333333333333445568889999****************************** PP

                  ..............HHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EE CS
                  ..............xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ..............evvkklnqg.ielllgeevvkidpgkkkvklekkkegdeekiaydklvlAtGss 110
                                    + ++g ++ +l++e+++++++++ + l    + ++e++  +klv+A+G+ 
   CTQ30441.1 102 fcddsaeqivnlllA---ECEKGgVQIRLRSEILSVERDEQGYRL----QVNGETLVTKKLVIASGGL 162
                  **********96541...45555599999999********99999....37899************64 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3
                  TEEE--TTS.BE....SSTTEEE-GGGC CS
                  xxxxxxxxx.xx....xxxxxxxxxxxx RF
  Pyr_redox_2 256 ggivvdefl.rt....nvpgiyaiGDva 278
                  gg+ ++e + rt    + pg+y iG v 
   CTQ30441.1 342 GGVDTNELSsRTmearKAPGLYFIGEVM 369
                  5555555544333333589999999987 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.7   1.7e-05      0.02       1      31 [.       7      36 ..       7      43 .. 0.90
   2 !   17.2   0.0   1.9e-06    0.0023      92     139 ..     119     166 ..     105     180 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkgn 31
                 i++GaG+aG+ +a ++ ++g  ++l l+ g+
   CTQ30441.1  7 IVVGAGAAGMFCAAQAGQLGC-RVLLLDNGK 36
                 89*******************.79***9994 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.9e-06
  Pyr_redox_3  92 ksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPn 139
                  ++  ++i+l +e+ sv+++++g++++ + et+ +kk++iA G  + P 
   CTQ30441.1 119 EKGGVQIRLRSEILSVERDEQGYRLQVNGETLVTKKLVIASGGLSMPG 166
                  666799************************************999886 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.8e-07   0.00022       1      28 [.       5      32 ..       5      72 .. 0.86
   2 ?   -3.5   0.0       3.4     4e+03     133     150 ..     144     161 ..     129     167 .. 0.80
   3 !    8.5   0.0   0.00076      0.91     341     370 ..     344     374 ..     327     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.8e-07
                CEEEE-SSHHHHHHHHHHHHTT--EEEE CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi 28
                d iV+G+G AG+ +A++a +lG++vlL+
  CTQ30441.1  5 DAIVVGAGAAGMFCAAQAGQLGCRVLLL 32
                579************************9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.4
                 ETTS-EEEECEEEE--TT CS
        GIDA 133 tedgetikakavviatGt 150
                 + +get+ +k+ via+G 
  CTQ30441.1 144 QVNGETLVTKKLVIASGG 161
                 457999999999999996 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00076
                 E-GGGB-T.TSBBSSSBTEEE-CGGGTB-SH CS
        GIDA 341 vdprqlln.tLetkkvkgLflAGqinGteGY 370
                 vd+++l + t+e +k +gL++ G++  ++G+
  CTQ30441.1 344 VDTNELSSrTMEARKAPGLYFIGEVMDVTGW 374
                 88999**99***************9988886 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   4.1e-09   4.9e-06       1     119 [.       5     140 ..       5     159 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 4.1e-09
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGG..lltsglvatdignkaee.............qvvtgiareflerlrqrggarlk.krskw 81 
                   D +VvG+g+aG+ +A +A + G +vlL+++ +  G   l+++g+++++++++ e              ++++ + ++f+e + + g a  + k+ + 
    CTQ30441.1   5 DAIVVGAGAAGMFCAAQAGQLGCRVLLLDNGKKPGRkiLMSGGGRCNFTNMYVEPaaylsqnphfcksALARYTQWDFIELVGKYGIA-WHeKTLG- 99 
                   779********************************74479999999**9999888888888888888888888889999999663333.3313333. PP

  FAD_oxidored  82 ntfepevakavleeml...aeagvtvllntrlvevekegkr 119
                   + f  + a+++++ +l   ++ gv++ l +++ +ve++++ 
    CTQ30441.1 100 QLFCDDSAEQIVNLLLaecEKGGVQIRLRSEILSVERDEQG 140
                   68999999999999998887789*********999998632 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   1.0   7.8e-09   9.3e-06       1      32 [.       8      39 ..       8      50 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 7.8e-09
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlG 32
                   +vGaG++G+ +A+ + + g++vlll+++ ++G
     CTQ30441.1  8 VVGAGAAGMFCAAQAGQLGCRVLLLDNGKKPG 39
                   8****************************999 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   0.00011      0.13       2      35 ..       6      39 ..       5      44 .. 0.92
   2 !    7.8   0.0    0.0042         5      40      72 ..     108     140 ..      96     149 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                ++vvG+G  g+ +A+ + +lg++V ++++++k+ 
  CTQ30441.1  6 AIVVGAGAAGMFCAAQAGQLGCRVLLLDNGKKPG 39
                58***************************99988 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0042
                 HHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS CS
   Pyr_redox  40 eeaskilqeklekngievllntkveeiegsedg 72 
                 e++ ++l  + ek g++++l +++ ++e +e+g
  CTQ30441.1 108 EQIVNLLLAECEKGGVQIRLRSEILSVERDEQG 140
                 45666778888999***************9998 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.5   2.1e-05     0.026       1      36 [.       5      38 ..       5      43 .. 0.93
   2 ?    2.4   0.0     0.053        63      87     143 ..     108     164 ..      92     190 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   D +v+GaG+Ag+  Aa+    + g +v+l++ ++++
     CTQ30441.1  5 DAIVVGAGAAGMFCAAQA--GQLGCRVLLLDNGKKP 38
                   789***************..***********99886 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.053
  Lycopene_cycl  87 krlkeellerlvengvk.lleakvesveeeeageslvvleggrkirarlvvdarglas 143
                    +++ + ll ++ ++gv+ +l++ + sve +e+   +  ++g+  +  +lv+ + gl  
     CTQ30441.1 108 EQIVNLLLAECEKGGVQiRLRSEILSVERDEQ-GYRLQVNGETLVTKKLVIASGGLSM 164
                    66777889999988886378************.6667788888999999998888543 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   0.00059       0.7       3      33 ..       5      35 ..       3      43 .. 0.90
   2 !    7.2   0.0    0.0022       2.6     103     160 ..     106     158 ..      71     166 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00059
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekr 33
                   d ++VGaG aG+  a    + G rv+l++  
     CTQ30441.1  5 DAIVVGAGAAGMFCAAQAGQLGCRVLLLDNG 35
                   789************************9975 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0022
                    -HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEEE CS
  FAD_binding_3 103 pqteleriLvehaeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlvG 160
                    + +++ ++L+++ e+ g+q+r   e++s+e+de+g +     + +ge+  v+ k +++
     CTQ30441.1 106 SAEQIVNLLLAECEKGGVQIRLRSEILSVERDEQGYRL----QVNGET-LVTKKLVIA 158
                    56677899999999999******************554....444554.555555555 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00019      0.23     209     260 ..     107     159 ..      73     184 .. 0.85
   2 ?    2.2   0.0     0.072        86     380     451 ..     316     394 ..     282     395 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00019
                    THHHHHHHHH..TTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S CS
  Amino_oxidase 209 lsqlpealae..elrgldirlntrVkeikregdgvtvtledgevveaDaVvvTv 260
                     +q+++ l +  e++g++irl+++  +++r++ g+++++ +ge++  ++ v+++
     CTQ30441.1 107 AEQIVNLLLAecEKGGVQIRLRSEILSVERDEQGYRLQV-NGETLVTKKLVIAS 159
                    5566666655699************************85.99999888888886 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.072
                    CSEEEEEECCTETTTSSSEEE.BTTHHHHHHHHHHCH....HCSTTEEE.SGGGCTT..TTTS.HHHHHHHHHHHHHHH CS
  Amino_oxidase 380 pkatlvtrWhtdplargsysyvsvgpghedydplakp....egdprlffAGehtsre..ypgt.vegAilSGlraAari 451
                        + t W+ +p+    y +  v+ g+ d   l +     ++ p+l+f Ge    +  + g+ ++ A++S++  A+++
     CTQ30441.1 316 TLVETLTAWRVQPNGTEGYRTAEVTLGGVDTNELSSRtmeaRKAPGLYFIGEVMDVTgwLGGYnFQWAWSSAWACAQAL 394
                    444567889999999888888888888888888888888889*********9754221134568888999999988876 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.1e-05     0.085       2     154 ..       8     160 ..       7     162 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.1e-05
  NAD_binding_9   2 ivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvwrtdqseelllNvpasemslftddp....ptfaeWlrerga...leeaeeldpdd 89 
                    +vGaG++G+ ++++  +        ++ l d+ ++pg +++  +   ++  +N+ ++   ++ ++p      +a++ +        ++   +  ++
     CTQ30441.1   8 VVGAGAAGMFCAAQAGQL-----GCRVLLLDNgKKPG-RKILMSGGGRCNFTNMYVEPAAYLSQNPhfckSALARYTQWDFIelvGKY-GIAWHEK 96 
                    899***999999998888.....699******88999.7777777789999***9999999999888888455555444432222122.2233446 PP

  NAD_binding_9  90 fvpRalyGrYlrdlfeellarlpe.gvtvevhraevvdleeradgqavlladgaslaadaVvLAlG 154
                     +   +  +  +++++ lla++++ gv+++ +r+e++++e++++g+++ + +g++l  +++v+A G
     CTQ30441.1  97 TLGQLFCDDSAEQIVNLLLAECEKgGVQIR-LRSEILSVERDEQGYRL-QVNGETLVTKKLVIASG 160
                    677777777788888888889955144444.59************966.999************99 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.7e-05     0.044      31      65 ..       6      40 ..       1      73 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.7e-05
                 EEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHH CS
  AlaDh_PNT_C 31 vlviGgGvaGlqAiatakglgakVtvlDvrparle 65
                  +v+G+G aG+  +a a +lg +V +lD  ++  +
   CTQ30441.1  6 AIVVGAGAAGMFCAAQAGQLGCRVLLLDNGKKPGR 40
                 68**************************8776555 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00012      0.14      18      71 ..       4      59 ..       1      66 [. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                EEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT..TTTST.TBSEEEEET CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkvailersvspGGGa..wlGGq.lfsaivvrk 71
                 D ++vGaG++G+ +a   ++  + +v++l++   pG  +   +GG+  f+++ v+ 
  CTQ30441.1  4 FDAIVVGAGAAGMFCAAQAGQL-GCRVLLLDNGKKPGRKIlmSGGGRcNFTNMYVEP 59
                599***************9999.********99999986422445542588887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2891.90
//
Query:       CTQ30442.1  [L=498]
Description: phosphate transporter, low-affinity [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.4e-89  297.9  18.1    9.8e-89  297.7  18.1    1.0  1  PHO4          Phosphate transporter family
     0.0022   17.9   1.4      0.082   12.8   0.0    2.5  2  Myc_target_1  Myc target protein 1


Domain annotation for each model (and alignments):
>> PHO4  Phosphate transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.7  18.1   1.1e-92   9.8e-89       1     337 []      30     487 ..      30     487 .. 0.92

  Alignments for each domain:
  == domain 1  score: 297.7 bits;  conditional E-value: 1.1e-92
        PHO4   1 iGanDvanafatsvgskaltlrqAvilaaifeflGavllGaeVaetirkgivdvelf...dpselmlgmlaallgaavwlllatvlglPvStthslvGa 96 
                 +G++D+ana+at+++++a++ + Av++aa+f+f+G++l G +Va +i + +  ++l     ++  +++++++ll+a++w+l ++++glP+S++h+l+Ga
  CTQ30442.1  30 NGFHDTANAVATVIYTRAMRSQLAVAMAALFNFFGVLLGGLSVAYAIVHMLP-TDLLlnmGSAHGLAMVFSMLLAAIIWNLGTWYFGLPASSSHTLIGA 127
                 8************************************************885.55443444444459******************************** PP

        PHO4  97 liGaalaa.....egg.eavkwkklvkivlswvlsPllggiiaallfllvkrlilvk.eklknalralpvlvlvtiailalsilfkgeskkddeetekl 188
                 +iG++l++     +++ +a++ +k++ i++s+++sP++g++ia  l++l++r+  ++ +k ++ ++++p                   +kkd+++++ +
  CTQ30442.1 128 IIGIGLTNalmtgTSVvDALNIPKVIGIFASLIISPIVGLVIAGGLIFLLRRY--WSgTKKRARIHLTPAE----------------REKKDGKKKPPF 208
                 *******9887553333666669******************************..5658888889999943................233677777777 PP

        PHO4 189 f.kflqvvsaalvsfahGanDvanaiGpllaali................................................................. 221
                 + ++++++sa+ vsf+hGanD+++ iG+++++li                                                                 
  CTQ30442.1 209 WtRIALILSAIGVSFSHGANDGQKGIGLVMLVLIgvapagfvvnmnasgyeitrtrdavnnvetffqqrpellkkatgvdqlvpspdtntaangefhch 307
                 66***************************99999***************************************************************** PP

        PHO4 222 .................................................................siykaskevplwvlllgglaialGlllgGkrvik 255
                                                                                  +++++ +  p+w++++++la+++G+++g++rv  
  CTQ30442.1 308 pantinaldrvktmltgvenyeslkpeqrgqlrrimlcisdttdkvaklpdvsaddqrllkklktDMLSTIEYAPIWIIMAVALALGIGTMIGWRRVAT 406
                 *********************************************************98887766444323345************************* PP

        PHO4 256 tvGekit.kkltpsrGfaaelaaaltvllasklglPvStThvlvgavvGvGlakkresavnwklvrnivlaWvlTlpvsalls 337
                 t+Geki  k +t+++G++a+++aa+++ las++g+PvStThvl+++v+G++l++++  +++ k+v +i++aWvlTlp++++ls
  CTQ30442.1 407 TIGEKIGkKGMTYAQGMSAQMTAAVSIGLASYTGMPVSTTHVLSSSVAGTMLVDGG--GLQKKTVTSILMAWVLTLPAAIILS 487
                 *******778********************************************75..**********************997 PP

>> Myc_target_1  Myc target protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.4    0.0073        65      24      52 ..      91     119 ..      75     126 .. 0.81
   2 !   12.8   0.0   9.1e-06     0.082      22      67 ..     156     202 ..     134     215 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0073
  Myc_target_1  24 aFcvSmvvGLllgaliyvlltwlsrrras 52 
                   a  + mv  +ll a+i+ l tw     as
    CTQ30442.1  91 AHGLAMVFSMLLAAIIWNLGTWYFGLPAS 119
                   77899*****************8766665 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 9.1e-06
  Myc_target_1  22 ilaFcvSmvvGLll.galiyvlltwlsrrrasaritrrssrrsrsss 67 
                     +  +S +vGL++ g+li++l  + s ++  ari  ++++r+++  
    CTQ30442.1 156 FASLIISPIVGLVIaGGLIFLLRRYWSGTKKRARIHLTPAEREKKDG 202
                   456789******99789*******************99999888643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3472.29
//
Query:       CTQ30443.1  [L=111]
Description: putative universal stress (ethanol tolerance) protein B [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-54  180.7   0.9    6.2e-54  180.5   0.9    1.0  1  UspB      Universal stress protein B (UspB)
  ------ inclusion threshold ------
        2.8    7.9   0.0        2.8    7.9   0.0    2.8  3  PsbN      Photosystem II reaction centre N protein (psbN)


Domain annotation for each model (and alignments):
>> UspB  Universal stress protein B (UspB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.5   0.9   6.9e-58   6.2e-54       1     107 []       1     107 [.       1     107 [. 0.99

  Alignments for each domain:
  == domain 1  score: 180.5 bits;  conditional E-value: 6.9e-58
        UspB   1 misgvalllalllvtvinlirylsslrallsvlreadPllyqqvdGrgfftthgqlskqvrllryiksreyldhhdpevilkcervrklfilssallvv 99 
                 mis++al++al++v+v+n++ry+sslrall+vlr +dPllyq+vdG gfft+hgq skq+rl+ yi +++y+dhhd+e+i +cervr++fil+sal+++
  CTQ30443.1   1 MISTIALFWALCVVCVVNMARYFSSLRALLVVLRGCDPLLYQYVDGGGFFTSHGQPSKQMRLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGL 99 
                 9************************************************************************************************** PP

        UspB 100 vvvsllll 107
                 vvvsl++l
  CTQ30443.1 100 VVVSLIAL 107
                 *****975 PP

>> PsbN  Photosystem II reaction centre N protein (psbN)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.5     0.099   8.9e+02       7      25 ..       5      23 ..       1      25 [. 0.59
   2 ?    7.9   0.0   0.00031       2.8      21      34 ..      47      60 ..      43      61 .. 0.84
   3 ?   -1.9   0.6      0.34   3.1e+03      15      21 ..      99     105 ..      90     110 .. 0.48

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.099
        PsbN  7 lsisiaavlvaiTgfsiYt 25
                ++++ a  +v++  ++ Y 
  CTQ30443.1  5 IALFWALCVVCVVNMARYF 23
                4445555666666666665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00031
        PsbN 21 fsiYtaFGPPskeL 34
                 + +t+ G+Psk++
  CTQ30443.1 47 GGFFTSHGQPSKQM 60
                5789********97 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.34
        PsbN  15 lvaiTgf 21 
                 lv+++ +
  CTQ30443.1  99 LVVVSLI 105
                 3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 824.61
//
Query:       CTQ30444.1  [L=60]
Description: hypothetical protein CH1034_350140 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.064   13.3   0.0      0.084   12.9   0.0    1.2  1  DUF1413   Domain of unknown function (DUF1413)


Domain annotation for each model (and alignments):
>> DUF1413  Domain of unknown function (DUF1413)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.7e-06     0.084      33      65 ..       5      36 ..       2      39 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.7e-06
     DUF1413 33 geRlslGklFlneVkkgedlrikvlgkkssnqq 65
                g R ++G+ F+neV k +++  +v + +++ +q
  CTQ30444.1  5 GGRYKVGNIFYNEVLK-GYPPANVARRTRAKRQ 36
                7799************.9999999988888666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       281  (0.0156729); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 476.21
//
Query:       CTQ30445.1  [L=145]
Description: universal stress global response regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-21   76.6   0.0    2.9e-21   76.5   0.0    1.0  1  Usp           Universal stress protein family
  ------ inclusion threshold ------
      0.049   13.4   0.0       0.72    9.6   0.0    2.6  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
      0.076   12.9   0.0       0.96    9.3   0.0    2.1  2  ETF           Electron transfer flavoprotein domain


Domain annotation for each model (and alignments):
>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   4.8e-25   2.9e-21       2     141 .]       3     138 ..       2     138 .. 0.98

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 4.8e-25
                 -SEEEEEE-SSHHHHHHHHHHHHHHHHCTSEEEEEEEEESSHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHH CS
         Usp   2 ykrIlVavDgseeskkAlewAlelakargaelillhvidprasgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevae 100
                 yk+Il+avD s+esk ++e+A+ +a+ ++a++ l+hv    ++ +++  d   ++ ++  +e++ +a+  +  ++ag +++e+   +gd +++++++ +
  CTQ30445.1   3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALT-ELSTNAGYPITETLSGSGDLGQVLVDAIK 100
                 9****************************************************************9996.***************************** PP

                 HTTSSEEEEESCCSSTTTTCSSBHHHHHHHHHTSSEEEEEE CS
         Usp 101 eedadliVvGsrgrsglsrlllGSvseyvlrhapcpVlvVr 141
                 ++d dl+V+G+++ +  s+  l S ++++++ +++++l+V+
  CTQ30445.1 101 KYDMDLVVCGHHQ-DFWSK--LMSSARQLINTVHVDMLIVP 138
                 *************.****9..88*****************7 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.076   4.6e+02     100     116 ..      30      46 ..      16      55 .. 0.75
   2 ?    9.6   0.0   0.00012      0.72      24      50 ..      63      89 ..      59     134 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.076
                   TTTT-EEEEEESSCCCC CS
  TPP_enzyme_M 100 fapeakiihididpaei 116
                   ++ +  +ih+d++ +++
    CTQ30445.1  30 YNAKVSLIHVDVNYSDL 46 
                   3333379****998776 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00012
                  HTTGHHHHHHHHHHHT-EEEEEGGGTT CS
  TPP_enzyme_M 24 rsgaseelrelaeklgiPvvttlmgkg 50
                  +++++++l+el+ + g P+++tl g g
    CTQ30445.1 63 SEETHHALTELSTNAGYPITETLSGSG 89
                  5799********************987 PP

>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.045   2.7e+02      13      39 ..      12      38 ..       9      40 .. 0.87
   2 ?    9.3   0.0   0.00016      0.96      78      99 ..      92     113 ..      86     130 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.045
                E-HHHHHHHHHHHHHHHHHT--EEEEE CS
         ETF 13 lnpvdlealeaArrlkekaggevtavv 39
                l+p ++ ++e+A+  +   +++v+++ 
  CTQ30445.1 12 LSPESKVLVEKAVSMARPYNAKVSLIH 38
                7999***********988889999876 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHC--SEEEEESSC CS
         ETF  78 akalaalikkedpdlvlagata 99 
                  ++l+++ikk+d dlv++g+  
  CTQ30445.1  92 GQVLVDAIKKYDMDLVVCGHHQ 113
                 589****************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1162.33
//
Query:       CTQ30446.1  [L=490]
Description: transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-90  302.7  20.0    4.7e-90  302.3  20.0    1.1  1  PTR2      POT family
      6e-13   48.4  61.2    7.4e-11   41.6  31.8    2.9  2  MFS_1     Major Facilitator Superfamily
     0.0036   17.1  10.8       0.21   11.4   0.4    4.1  3  DUF5337   Family of unknown function (DUF5337)


Domain annotation for each model (and alignments):
>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.3  20.0   7.9e-94   4.7e-90       2     388 ..      82     443 ..      81     456 .. 0.97

  Alignments for each domain:
  == domain 1  score: 302.3 bits;  conditional E-value: 7.9e-94
                 HHHHHHHHHHHHHHHHCCCCT.TTTSS--S--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        PTR2   2 ktIllgsiiyaiGhvvlalsa.ipslksaesagvrvallfigLalIalGtGgiKpnvSafgadqfeekdprersrfFsiFyfsiNvGSLlsliitpylq 99 
                 +t +lg+i++aiG++++++s  +p+            l+fi+L +Ia+G+G++K+n+++++++++++kd r +++ F++Fy+siN+GSLlsl + p+++
  CTQ30446.1  82 RTLVLGAIVLAIGYFMTGMSLlKPQ------------LIFIALGTIAVGNGLFKANPASLLSKCYPPKDARLDGA-FTLFYMSINIGSLLSLSLAPVIA 167
                 899****************997777............7*************************************.*********************** PP

                 CTT-HHHHHHHHHHHHHHHHHHHHCTTTS-EE------SHHHHCCCHSHHHHHCCCHHHHHHHHHHHHHSHHHHHH--.-HHCCHCHHHHHHHHH-HHT CS
        PTR2 100 envgyplgFgipavlmiiallvFllGsrlykkkppkgnvltkvfkvllvaaknkvkkirssagkkklhwldkakeldk.alsileivvegivfnimtkk 197
                 e+ gy+++++++++++iiallv++++++++k+++++++    + + l +++       +++ +++ + wl+++  +++ +l++l++vv + +f+ +++ 
  CTQ30446.1 168 EKFGYAVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHRPLSLRNLALVLA------GTVVMIFLCAWLMHNVMIANlVLIVLSVVVIAFFFREAFRL 260
                 ***********************************************77744......67799************************************ PP

                 HHCHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHH.HTST-BE.SSCB--GGGGHHHHHHHHHHHHHHHHHCTHHHHHHTTSSCCCCHHHHHHHHHHH CS
        PTR2 198 kveevkrllrvvplflpliifwalyaQmgttlvlqa.rtmnrki.gsfeippaqlqvlnailillliPifdklvypllrkltlgltslkkiavGlflas 294
                 +++ +++++ +++l++++++f++lyaQm+t+l+++a ++++++i g f+i+p ++q+ln++++++++P++++++++l+ k + +lt++ k+++G+fl++
  CTQ30446.1 261 DKTGRNKMFVAFILMIEAVLFYILYAQMPTSLNFFAiNNVHHEIlG-FTINPVSFQALNPFWVVVASPVLAAIYTHLGHKGK-DLTMPVKFTLGMFLCA 357
                 ********************************************99.*********************************87.**************** PP

                 HHHHHHHHHHHHHCCHHHT----------TCCCHHHHHHHHHHHHHCCCHHHHHHCTSS-TTTCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCT CS
        PTR2 295 lafaiaaivelkraktlpelpeaeevqisvlwlipqylligiselfasiggleffykeapksmkslitglflltnalgnflssvlatlvakate 388
                 l+f++aa+  +++a+++          +s +++++ yl+++++el++s+ gl++++ + p++++++i g+++lt+a++++l++++at++a +++
  CTQ30446.1 358 LGFLTAAAAGMWFADAQG--------LTSPWFIVLVYLFQSLGELLISALGLAMVAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPEN 443
                 ****************83........99*************************************************************98765 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6  31.8   1.2e-14   7.4e-11      11     257 ..      29     281 ..      16     339 .. 0.70
   2 !   10.9  21.6   2.6e-05      0.16      66     171 ..     354     475 ..     349     488 .. 0.73

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 1.2e-14
       MFS_1  11 arsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllll.fa...sslwlllvlrvlqGlgagalfp 104
                 +++ +  +l  +  ++lg+s  ++ + ++++a++   ++ ++G+++d  +G +r+l+lg++++a+g ++++ ++   ++  l++++    ++g g++ +
  CTQ30446.1  29 GYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHlLGTKRTLVLGAIVLAIG-YFMTgMSllkPQ--LIFIALGTIAVGNGLFKA 124
                 444455555557799********************************988****************.666657554333..45555555788889**** PP

       MFS_1 105 agaaliadwfpke..ergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawk 201
                 + a+l+++ +p++  +   a+ l+++++++G++l   l++++a+ +g+ +++ ++++ +++a++   +++ ++   +   s+ +      p +l++ + 
  CTQ30446.1 125 NPASLLSKCYPPKdaRLDGAFTLFYMSINIGSLLSLSLAPVIAEKFGYAVTYNLCGAGLIIALL---VYFACRGMVKDIGSEPDH----RPLSLRN-LA 215
                 ************655999*******************************************977...666444444444444444....5566666.55 PP

       MFS_1 202 allkdpvlwillialllfffgfsg.......lltllplylqevlgls....glllaglllallalvg 257
                 ++l+  v++ +++++ l++ ++ +        ++ + ++++e + l+    + + ++++l++ a+++
  CTQ30446.1 216 LVLAGTVVM-IFLCAWLMHNVMIAnlvlivlSVVVIAFFFREAFRLDktgrNKMFVAFILMIEAVLF 281
                 555555332.222222221122223333333222222244666666666554455554444444433 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 2.6e-05
       MFS_1  66 llglllfalg.lllllfa.....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......... 149
                 +l++l+f+ + ++ ++fa     +s w+++++ ++q+lg+ ++ ++g+a++a+++p+   g+ +g++ ++ +++++lg  ++ + a             
  CTQ30446.1 354 FLCALGFLTAaAAGMWFAdaqglTSPWFIVLVYLFQSLGELLISALGLAMVAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTA---Vpenitdplq 449
                 333333333324555565667776677999***************************77777778888887777777777777766...0345679999 PP

       MFS_1 150 ....Wravfyilaivsllafvlflll 171
                     ++ vf  +++v+l + v+++l 
  CTQ30446.1 450 tlpvYTNVFSKIGLVTLGVTVVMALM 475
                 99998888888888888887754443 PP

>> DUF5337  Family of unknown function (DUF5337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.4   0.00014      0.81      28      62 ..      36      69 ..      32      71 .. 0.85
   2 !   11.4   0.4   3.5e-05      0.21      13      55 ..     211     253 ..     203     267 .. 0.89
   3 ?   -0.5   0.4      0.18   1.1e+03      19      40 ..     465     486 ..     459     488 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00014
     DUF5337 28 lgaqwigeqlglsnRyalLfdLaAlAaliwalvvt 62
                ++a +  +qlg s+  a ++ + A+Aal+++l+ +
  CTQ30446.1 36 ILAVFFVKQLGFSQEQA-FITFGAFAALVYGLISI 69
                677788999***99866.578***********976 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 3.5e-05
     DUF5337  13 grlvalviavtmllwlgaqwigeqlglsnRyalLfdLaAlAal 55 
                  r  alv+a+t+++  +  w+ +++ ++n + + +   ++A +
  CTQ30446.1 211 LRNLALVLAGTVVMIFLCAWLMHNVMIANLVLIVLSVVVIAFF 253
                 5899*************************99999999999865 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.18
     DUF5337  19 viavtmllwlgaqwigeqlgls 40 
                 ++ vt+++ l + w+  +++ +
  CTQ30446.1 465 TLGVTVVMALMVPWLNRMINTP 486
                 3557888888888988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1148  (0.0640303); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 3267.38
//
Query:       CTQ30447.1  [L=250]
Description: putative SAM-dependent methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.5e-105  350.6   0.0     4e-105  350.4   0.0    1.0  1  SAM_MT    Putative SAM-dependent methyltransferase


Domain annotation for each model (and alignments):
>> SAM_MT  Putative SAM-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.4   0.0  2.2e-109    4e-105       2     230 ..      19     246 ..      18     247 .. 0.99

  Alignments for each domain:
  == domain 1  score: 350.4 bits;  conditional E-value: 2.2e-109
      SAM_MT   2 laerlklesdeeaelaLvlteerlelrkldekklgavlvdfvsgaaahRrkfgggrgeaiakavglkkgvlptvlDaTaGlGrDafvlaslGckvtliE 100
                 la+r++le+d+++ +aLvlt+e+lelrk+de+klg ++vdfv ga+ahRrkfgggrgea+akavg+k+++lp+v+DaTaGlGrDafvlas+Gc+v+++E
  CTQ30447.1  19 LAARWGLEQDDDNPMALVLTTEHLELRKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLE 117
                 789************************************************************************************************ PP

      SAM_MT 101 rhpvvaaLLedglkRakqdaeigellaerlkLlaasslealakleeekpdvvYlDPmyPhkkksalvKKemrvfqqlvGadedadeLleaalalakkRv 199
                 r+pvvaaLL+dgl R ++daeig +l+erl+L++assl+al++++  +p+vvYlDPm+Phk+ksalvKKemrvfq+lvG d dad Ll++a++la+kRv
  CTQ30447.1 118 RNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP-RPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLAPARQLATKRV 215
                 **********************************************.**************************************************** PP

      SAM_MT 200 vVKrPkkaevlaekkpsasietkkhRfDiYl 230
                 vVKrP++a++la+ ++  ++ tk hRfDiY 
  CTQ30447.1 216 VVKRPDYAPPLADVATPNAVVTKGHRFDIYA 246
                 ******************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       263  (0.014669); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1885.09
//
Query:       CTQ30448.1  [L=680]
Description: oligopeptidase A [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.3e-175  585.1   0.0   1.6e-175  584.8   0.0    1.1  1  Peptidase_M3  Peptidase family M3


Domain annotation for each model (and alignments):
>> Peptidase_M3  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  584.8   0.0  9.1e-180  1.6e-175       1     457 [.     222     677 ..     222     678 .. 0.99

  Alignments for each domain:
  == domain 1  score: 584.8 bits;  conditional E-value: 9.1e-180
                   HHHC-S-HHHHHHHHHHHCTTTCCSS.....THHHHHHHHHHHHHHHHHHHTT-SSHHHHHHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M3   1 llkespdrelRkeayeashskaaeqrnt...lensklleellklraelAkllgyesyaelaledkmaknpetvldfleelvkklrpllekelkllke 94 
                   +++++++++lR+e+y+a++++a++q ++   ++ns+++ e+l lr+elA+llg++sya ++l++kmak p++vldfl +l k++rp++ekel++l++
    CTQ30448.1 222 VMTYCDNQALREEMYRAYSTRASDQGPNagkWDNSPVMAEILALRHELAQLLGFDSYAYKSLATKMAKDPQQVLDFLTDLAKRARPQGEKELAQLRA 318
                   69**********************9998888****************************************************************** PP

                   HHHHCCT-SSS--CCCHHHHHHHHHCCCCS--CCCCGGG-BHHHHHHCHHHHHHHHHTEEEEEETTS..--SSTT-EEEEEEET.TT-EEEEEEEEE CS
  Peptidase_M3  95 lkkkelglegelqpwDvaYYsekqreekydldqeelkeyfpletvleGllelfeeLfGikfveekdakgevwhedVrkleVvdeilsegligeiylD 191
                   ++k+e g++ elqpwD+aYYsekq+++ y++++e+l++yfp +++++Gl+e++++++Gi+ +e++d+  +vwh++Vr++e++de  +++l g++ylD
    CTQ30448.1 319 FAKAEFGVD-ELQPWDIAYYSEKQKQHLYSISDEQLRPYFPENKAVSGLFEVVKRIYGITAKERTDV--DVWHPEVRFFELYDE--HNELRGSFYLD 410
                   *********.*********************************************************..***************..*********** PP

                   EC--TTS-SS-EEEEEE--B.T.TS-B--EEEEEEEEE---BTTS--B--HHHHHHHHHHHHHHHHHHC--BSSGGGSTT.-S-CCCCCHHHHHHHH CS
  Peptidase_M3 192 lyerkgKrggAasfglvksr.e.dgtrqlpviylllNftkpsskkPsLLtldevetLfHEfGHsmHsllsrteysnvsgt.nvpidfvElpSqlmEn 285
                   ly+r++KrggA++ ++v ++ + dg++q+pv+yl++Nf++p+++kP+L+t+dev tLfHEfGH++H++l+r + + vsg+  vp+d+vElpSq+mEn
    CTQ30448.1 411 LYAREHKRGGAWMDDCVGQMrKlDGSLQKPVAYLTCNFNRPVNGKPALFTHDEVITLFHEFGHGLHHMLTRIDTAGVSGIsGVPWDAVELPSQFMEN 507
                   ******************99636*********************************************************99*************** PP

                   GGGSHHHHHCC-B-TTT--B--HHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHCTT-TCCGHH....HHHHHHHHHHCTTSCTTBTTSSGGGC-CCC CS
  Peptidase_M3 286 lltepevlkslskhyetgeaipeelleklikaknvnaalellrqlvfaafdqelHeeaeeeqilkkdlletyaelrkkflglpvapdeasqasFghl 382
                   +++epe+l+++s+hyetge++p+ellek+++akn++aa+++lrql f+ fd++lH e+++eq  k  +let+ae++k+++ +p + + ++++ F+h+
    CTQ30448.1 508 WCWEPEALAFISGHYETGEPLPQELLEKMLAAKNYQAAMFILRQLEFGLFDFRLHAEYKPEQGAK--ILETLAEIKKQVAVVPGPTWGRFPHAFSHI 602
                   ************************************************************99655..****************************** PP

                   HTSS-TTTTCHHHHHHHHHHHHHHCCHHCCTT-CCHHHHHHHHTTTTTTSS-HHHHHHCCCSS---SHHHHHHCT CS
  Peptidase_M3 383 fahgYaanYYsylyaevlaldifekffeedplnretGeryrkeiLsrGgskdplellkkflgrepsadallkalg 457
                   fa+gYaa+YYsyl+a vla+d+f++f+ee+++nretG+++ ++iLsrGgs++p+el+k+f+grep+ da+l+++g
    CTQ30448.1 603 FAGGYAAGYYSYLWADVLAADAFSRFEEEGIFNRETGQSFLDNILSRGGSEEPMELFKRFRGREPQLDAMLEHYG 677
                   *************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4690.83
//
Query:       CTQ30449.1  [L=423]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-14   52.2   0.0    8.6e-14   51.5   0.0    1.3  1  PAP2      PAP2 superfamily
    0.00019   21.2   0.1    0.00047   19.9   0.1    1.7  1  PAP2_3    PAP2 superfamily
  ------ inclusion threshold ------
      0.022   14.7   0.2      0.052   13.4   0.2    1.6  1  DUF4224   Domain of unknown function (DUF4224)


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   1.4e-17   8.6e-14       7     120 ..     179     284 ..     172     298 .. 0.86

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 1.4e-17
        PAP2   7 lalalaalltsvlKdlvgrpRPfflaeetkldtqvstletses..keakesfPSgHsafafalalllalllrrkrkkiglvllalillllavlvalsRl 103
                 l+ a+ + + + +K +++ pRPf +  ++++    +   + ++  ++ + sfPSgH+ ++ + allla+++++++           l++  +  ++sR+
  CTQ30449.1 179 LIKASEVSTGE-AKKHFNNPRPFLVQGNNIHLVPDDVVVKDNQpyTADGGSFPSGHTNTGYTDALLLAAMIPERYDA---------LVARGARYGYSRI 267
                 34444444444.4*******************998888877779999999***************************.........9************ PP

        PAP2 104 ylgvHflsDvlaGlliG 120
                 +lgvH++ Dv+++ +++
  CTQ30449.1 268 VLGVHYPLDVIGSRMVA 284
                 ************99887 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   7.9e-08   0.00047     112     184 ..     212     284 ..      95     285 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 7.9e-08
      PAP2_3 112 ravllrgtienglaa....fPSlHvawallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvala 184
                  +v+++++  +++ a    fPS H+      al+l+ + + r    ++++  +   ++ +++g HY +Dvi++ ++a
  CTQ30449.1 212 DDVVVKDN--QPYTAdggsFPSGHTNTGYTDALLLAAMIPER--YDALVARGARYGYSRIVLGVHYPLDVIGSRMVA 284
                 45555555..666668888***********************..7777889999******************98876 PP

>> DUF4224  Domain of unknown function (DUF4224)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   8.7e-06     0.052      10      35 ..      71      98 ..      69     101 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.7e-06
     DUF4224 10 LTGykrrsaQak..wLranGipfvvrad 35
                L ++k+ + Qa+  wL+a+G++f++ra+
  CTQ30449.1 71 LAHTKQNQTQADtaWLKASGYDFQTRAN 98
                56889999998555************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3058.53
//
Query:       CTQ30450.1  [L=280]
Description: putative DNA (exogenous) processing protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.6e-117  389.9   0.0   4.2e-117  389.7   0.0    1.0  1  RsmJ           Ribosomal RNA large subunit methyltransferase 
     0.0061   16.2   0.0        0.6    9.7   0.0    2.5  3  Cons_hypoth95  Conserved hypothetical protein 95


Domain annotation for each model (and alignments):
>> RsmJ  Ribosomal RNA large subunit methyltransferase D, RlmJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  389.7   0.0  4.7e-121  4.2e-117       1     245 []      33     278 ..      33     278 .. 1.00

  Alignments for each domain:
  == domain 1  score: 389.7 bits;  conditional E-value: 4.7e-121
                 SS--EEEESS--SSEEETTSHHHHHHSGGGGTGGGTTT-TT--GGGHHHHHHHHHTTTTSS--EEE-HHHHHHHHS-TT-EEEEE---TTHHHHHHHHT CS
        RsmJ   1 ekpfavlDthaGvGrYdLsseeaektgeaeeGiaRliaqadlpaeleryldvvrklnkgeklryYpGspllarrllReqDrlvlteLhpkdaalLkael 99 
                 ekpf++lDthaG+GrY+Ls+e+ae+tge+ eGiaR+++q+dlpaele+y+ vv+++n++++lryYpGspl+ar+llReqD+l++teLhp+d +lL+ae+
  CTQ30450.1  33 EKPFLYLDTHAGAGRYQLSGEHAERTGEYLEGIARIWQQDDLPAELEPYISVVEHFNRNGQLRYYPGSPLIARQLLREQDSLQMTELHPSDFPLLRAEF 131
                 79************************************************************************************************* PP

                 TT-TTEEEESS-HHHHHHHS-S-TTS-EEEEE----SSCCHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHCTT---EEEEEEESS--- CS
        RsmJ 100 akdkrvrvkkadGfaalkaklppkekRglvliDPPyeakdeydrvvaalrealkRlaqavlaiWyPikdrkqlkaflkaleatvirkiLkielevrPds 198
                 +kd+r+rv kadG+++lkaklpp ++Rgl+liDPPye k++y++vv++++e++kR+a++++a+WyP++ r q+k+++k+leat+irkiL+iel+vrPds
  CTQ30450.1 132 QKDSRARVDKADGYQQLKAKLPPVSRRGLILIDPPYEIKTDYQAVVTGINEGYKRFATGTYALWYPVVLRAQIKRMIKELEATGIRKILQIELAVRPDS 230
                 *************************************************************************************************** PP

                 SSSS--EEEEEEES--TTHHHHHHHHHHHHHHHH-TT.-SEEEEEEEE CS
        RsmJ 199 derklngsgmvvinpPwtledelkevlpvlkkklaee.tgrirleWlv 245
                 d+r++++sgm+vinpPw+le+++++vlp+l++kl+++ tg+++++W+v
  CTQ30450.1 231 DQRGMTASGMIVINPPWKLEQQMNNVLPWLHSKLVPTgTGHATVSWIV 278
                 *************************************9********97 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.29   2.6e+03      34      54 ..      27      47 ..      17      50 .. 0.70
   2 !    9.7   0.0   6.7e-05       0.6      71     137 ..     118     181 ..      93     189 .. 0.76
   3 !    3.5   0.0    0.0053        47      79     137 ..     203     261 ..     198     270 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.29
                   HHHCCCHCC-EEEETT-TTSH CS
  Cons_hypoth95 34 nilaaeiegarvLDlfaGsGa 54
                   + l+++ +   +LD +aG G 
     CTQ30450.1 27 ESLKEKEKPFLYLDTHAGAGR 47
                   556666667778999999985 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 6.7e-05
                    ES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHHHHH CS
  Cons_hypoth95  71 ekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakellieevlelle 137
                    e +++ + +l+++ ++     ++++ k d +++l+ +    ++  ++ +DPPy+ +  +++v++ ++
     CTQ30450.1 118 ELHPSDFPLLRAEFQKDS---RARVDKADGYQQLKAKLPPVSRRGLILIDPPYEIKTDYQAVVTGIN 181
                    555555555555555444...567778888888888888888889*********9999999988776 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.0053
                    HHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTTCH.HHHHHHHH CS
  Cons_hypoth95  79 ilkenleelkleeetaelkedaleallklakkkeefdivflDPPyakellieevlelle 137
                    ++k+ ++el++++  ++l+ + + + ++  +      ++ ++PP++ e+++++vl  l+
     CTQ30450.1 203 QIKRMIKELEATGIRKILQIELAVRPDSDQRGMTASGMIVINPPWKLEQQMNNVLPWLH 261
                    55666666666663333333333333344344455689**********99999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2174.80
//
Query:       CTQ30451.1  [L=450]
Description: glutathione oxidoreductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-67  228.1   0.8    1.9e-67  227.5   0.8    1.2  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    9.5e-37  125.6   0.8    1.1e-35  122.2   0.3    2.7  3  Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase,
    1.2e-16   61.0   1.6    1.4e-16   60.8   0.1    1.9  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    6.8e-16   58.4   2.9    1.2e-15   57.5   0.0    2.0  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0035   16.1   0.6        8.6    4.9   0.0    3.1  3  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
      0.025   13.9   0.8       0.31   10.3   0.0    2.3  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.037   13.4   0.5        0.3   10.4   0.5    2.0  2  FAD_oxidored   FAD dependent oxidoreductase
       0.16   11.0   5.9        0.2   10.7   1.7    2.5  2  GIDA           Glucose inhibited division protein A
       0.17   11.0   0.0       0.31   10.1   0.0    1.4  1  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
       0.19   10.8   5.2        3.5    6.6   0.1    2.7  4  FAD_binding_2  FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.5   0.8   1.1e-70   1.9e-67       2     294 .]       6     318 ..       5     318 .. 0.98

  Alignments for each domain:
  == domain 1  score: 227.5 bits;  conditional E-value: 1.1e-70
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH.........................HHHHCHHHHCCCCH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias.........................evvkklnqgielll 71 
                  d++ iGgG +G+a   ++a +g k +l+e   l+gtc+n+gc+++k+++++a+ +e ++                           ++++ ++++++l
   CTQ30451.1   6 DYLAIGGGSGGIASINRAAMYGQKCALIEakeLGGTCVNVGCVPKKVMWHAAQIREAIHlygpdygfdttinhfdweklvasrsAYIDRIHTSYDNVL 103
                  6778************************8888**************************9*************************999*********** PP

                  CCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  72 geevvkidpgkkkvklekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevt 169
                  g+++v++++g +++++ +++e ++e i++d++++AtG++p  ++ipGv e++      +ds+  ++l  lpkr++vvG+Gyi+vElA++++ lg+e++
   CTQ30451.1 104 GKNKVDVIKGFARFVDAHTVEVNGEIITADHILIATGGRPSHPDIPGV-EYG------IDSDGFFELPALPKRVAVVGAGYIAVELAGVINGLGAETH 194
                  ************************************************.666......89************************************** PP

                  EEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE.EEEEEETTSCEEEESEEEE-S-EEES-HHCS.HCCT-EEEETTEEE--TTSB CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 170 lveardrllraldkelsaaleealekeGvevklgtsvkeidgnge.klevvledgeeidadlvvvavGvrpstelle.eklglelderggivvdeflr 265
                  l  +   +lr++d+ + ++l e++++eG ++++++ +k++ +n + +l+++ledg++  +d++++a+G++p t+ ++  + g++++++g+i vd+f++
   CTQ30451.1 195 LFVRKHAPLRSFDPLIVETLVEVMNAEGPQLHTNAIPKAVVKNADgSLTLELEDGRSQTVDCLIWAIGREPATDNFNlAATGVKTNDKGYIIVDKFQN 292
                  *********************************************9999************************************************* PP

                  ESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 266 tnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  tnvpgiya+GD +   g +el+++Av++G
   CTQ30451.1 293 TNVPGIYAVGDNT---GAVELTPVAVAAG 318
                  ***********99...*********9987 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.84   1.5e+03      46      80 ..     156     190 ..     147     197 .. 0.85
   2 ?   -0.8   0.0         1   1.8e+03      53      88 ..     285     322 ..     270     333 .. 0.74
   3 !  122.2   0.3   6.3e-39   1.1e-35       1     109 [.     339     449 ..     339     450 .] 0.99

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.84
                    HTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHH CS
  Pyr_redox_dim  46 etkgfvKlvadaktgkvlGahivGpgageliqela 80 
                    +++gf+ l a  k   v+Ga  ++ + + +i++l 
     CTQ30451.1 156 DSDGFFELPALPKRVAVVGAGYIAVELAGVINGLG 190
                    5789999999999999*******999999999876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1
                    EEEET.TTTBEEEEEEECTTHHH.HHHHHHHHHHTTSB CS
  Pyr_redox_dim  53 lvada.ktgkvlGahivGpgage.liqelavaikaglt 88 
                    +++d+ ++  v G+  vG++ g   +  +ava   +l+
     CTQ30451.1 285 IIVDKfQNTNVPGIYAVGDNTGAvELTPVAVAAGRRLS 322
                    688888999999******98876445666666555555 PP

  == domain 3  score: 122.2 bits;  conditional E-value: 6.3e-39
                    BEEEEESSSEEEEEES-HHHHHHHHSG..EEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHT CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagie..ikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedlad 94 
                    iptvvf++p++++vGlte +A++++++  +kv+k++f+a++ a++++++ + +Klv+   ++k++G+h +G g++e++q++ava+k+g+t++d+++
     CTQ30451.1 339 IPTVVFSHPPIGTVGLTEPQAREQYGDdaVKVYKSSFTAMYTAVTSHRQPCRMKLVCVGPEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDN 434
                    7*********************************************************************************************** PP

                    SBSSSSSTGGGGHCH CS
  Pyr_redox_dim  95 tihihPtlsealkea 109
                    t++ihPt +e+++++
     CTQ30451.1 435 TVAIHPTAAEEFVTM 449
                    ************997 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       5.7     1e+04       5      31 ..      10      36 ..       8      37 .. 0.82
   2 !   60.8   0.1     8e-20   1.4e-16       1      79 [.     169     247 ..     169     249 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.7
                ECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  5 vGgGyiglElAgalaelgkkVtvvers 31
                +GgG  g+   + +a +g+k  ++e++
  CTQ30451.1 10 IGGGSGGIASINRAAMYGQKCALIEAK 36
                899999998888888899998888875 PP

  == domain 2  score: 60.8 bits;  conditional E-value: 8e-20
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTS.EEEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedg.vesvklk 79 
                 +v+vvG+Gyi++ElAg+++ lg+++++++r+  +lr +D+ + + l e + ++g ++++n+ ++++++++dg ++ ++l+
  CTQ30451.1 169 RVAVVGAGYIAVELAGVINGLGAETHLFVRKHAPLRSFDPLIVETLVEVMNAEGPQLHTNAIPKAVVKNADGsLT-LELE 247
                 79*********************************************************************9554.5555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.9      0.25   4.5e+02       3      35 ..      10      41 ..       8      51 .. 0.88
   2 !   57.5   0.0   6.9e-19   1.2e-15     109     305 .]     116     302 ..      71     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.25
  Pyr_redox_3  3 iGaGPaGlaaaielkkagledylilEkgnigns 35
                 iG+G  G+a+   +   g  +   +E +++g +
   CTQ30451.1 10 IGGGSGGIASINRAAMYGQ-KCALIEAKELGGT 41
                 9**********99999998.6999999998865 PP

  == domain 2  score: 57.5 bits;  conditional E-value: 6.9e-19
  Pyr_redox_3 109 kedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdp 206
                  +  +  +ve + e ++A++++iAtG   +P  ++ipG e + + +  + e+ +   ++v+V+G++  av+ A  +   gae ++++r++        p
   CTQ30451.1 116 RFVDAHTVEVNGEIITADHILIATGG--RPSHPDIPGVE-YGIDSDGFFEL-PALPKRVAVVGAGYIAVELAGVINGLGAETHLFVRKH-------AP 202
                  3457899******************8..**********9.9******9999.8899*******************************97.......58 PP

  Pyr_redox_3 207 syslkpdienrleelvkeekikvlfnaevkei.kekeeeykvktedgkkvevkddvvlatGykpdlsf..lkkslfeldedgrpvlteeteetnvpgl 301
                    s  p i + l e+++ e  ++++na  k++ k+ + + +++ edg++ +v d  + a+G +p ++   l++ +++++++g++ +++  + tnvpg+
   CTQ30451.1 203 LRSFDPLIVETLVEVMNAEGPQLHTNAIPKAVvKNADGSLTLELEDGRSQTV-DCLIWAIGREPATDNfnLAATGVKTNDKGYIIVDK-FQNTNVPGI 298
                  8899*************98899999998777516778999*******99776.778********9987345669****9999999986.578****** PP

  Pyr_redox_3 302 flaG 305
                  + +G
   CTQ30451.1 299 YAVG 302
                  *998 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.5     0.012        22       2      33 ..       6      37 ..       5      45 .. 0.88
   2 !    3.9   0.0    0.0099        18     143     168 ..     121     146 ..     101     160 .. 0.82
   3 !    4.9   0.0    0.0048       8.6     111     163 ..     210     262 ..     191     281 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.012
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekak 33
                 d + iGgG  G+    +aa  g++ +l+e+++
   CTQ30451.1  6 DYLAIGGGSGGIASINRAAMYGQKCALIEAKE 37
                 5677*************************985 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0099
                  EEEEE.TTEEEEESEEEE----S.S-G CS
  HI0933_like 143 frvktkseeeleadklvlAtGGl.SiP 168
                  ++v++ ++e ++ad++++AtGG  S P
   CTQ30451.1 121 HTVEV-NGEIITADHILIATGGRpSHP 146
                  67888.9***************63555 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0048
                  HHHHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE--- CS
  HI0933_like 111 ivdallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtG 163
                  iv++l++ ++++g +l+++   k+v k++dg+++++++++++ + d l+ A+G
   CTQ30451.1 210 IVETLVEVMNAEGPQLHTNAIPKAVVKNADGSLTLELEDGRSQTVDCLIWAIG 262
                  89***********************************9999999*****9998 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.081   1.5e+02      32      59 ..       8      35 ..       3      58 .. 0.89
   2 ?   10.3   0.0   0.00017      0.31      28      86 ..     167     226 ..     162     241 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.081
                 EEESTSHHHHHHHHHHHHTT-EEEEEES CS
  AlaDh_PNT_C 32 lviGgGvaGlqAiatakglgakVtvlDv 59
                 l iGgG  G+++i+ a+  g+k  +++ 
   CTQ30451.1  8 LAIGGGSGGIASINRAAMYGQKCALIEA 35
                 679***************9999887765 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00017
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH.TTTCECEEHCHHHHHHH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles.lgakfvevlksqeella 86 
                  p +v v+G+G   ++ + + +glga++ ++  ++a l+ ++  + ++ vev++++  +l+
   CTQ30451.1 167 PKRVAVVGAGYIAVELAGVINGLGAETHLFVRKHAPLRSFDPlIVETLVEVMNAEGPQLH 226
                  679************************************999777777888776655544 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   0.00017       0.3       4      50 ..       9      54 ..       6      67 .. 0.81
   2 ?    0.4   0.0      0.18   3.2e+02      79     126 ..     200     247 ..     175     259 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00017
  FAD_oxidored  4 VvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignk 50
                   +GGg++G+a    Aa  G+k +L+e +  lGG+  + +  +   ++
    CTQ30451.1  9 AIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMW 54
                  69***********************985.69*999987776655555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.18
  FAD_oxidored  79 skw.ntfepevakavleemlaeagvtvllntrlvevekegkriesvtve 126
                   +++ ++f+p ++++++e m ae g ++ +n+ +++v+k+ +    +++e
    CTQ30451.1 200 HAPlRSFDPLIVETLVEVMNAE-GPQLHTNAIPKAVVKNADGSLTLELE 247
                   333348**********999999.**************985444444443 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.7   0.00011       0.2       5     149 ..      10     140 ..       6     148 .. 0.76
   2 ?    1.5   0.1     0.069   1.2e+02       2      31 ..     170     199 ..     169     241 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
                 E-SSHHHHHHHHHHHHTT--EEEE..ES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SHHHHHHHHEEEEEEESTTS-CCC-EEEEEE-HHHHHHHH CS
        GIDA   5 iGgGhAGceAAlaaarlGakvlLi..thkldtiaelsCnpsiggiakgllvrEidalggliikaadkagiqfrilNrskGpavralraqvdrelyskev 101
                 iGgG  G++    aa  G k +Li   +  +t+++++C p      ++++ + i   g   +  +  ++   + l      a r+    +dr +  +++
  CTQ30451.1  10 IGGGSGGIASINRAAMYGQKCALIeaKELGGTCVNVGCVPKKVMWHAAQIREAIHLYGPDYGFDTTINHFDWEKL-----VASRSA--YIDRIH--TSY 99 
                 9***********************9888899**********9999999999999888877765444444333333.....444444..677654..445 PP

                 HHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS-EEEECEEEE--T CS
        GIDA 102 teklenepnleiieeeveeliveekkvkgvvtedgetikakavviatG 149
                  ++l + +++++i++ +  ++         v  +ge+i+a+++ iatG
  CTQ30451.1 100 DNVLGK-NKVDVIKGFARFVDA------HTVEVNGEIITADHILIATG 140
                 555555.889999998888866......56677888899999999998 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.069
                 EEEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA   2 viViGgGhAGceAAlaaarlGakvlLithk 31 
                 v V+G+G   +e A  +  lGa++ L++ k
  CTQ30451.1 170 VAVVGAGYIAVELAGVINGLGAETHLFVRK 199
                 89************************9655 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00017      0.31     140     210 ..     123     186 ..      98     218 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00017
  K_oxygenase 140 aegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedl 210
                   e + e ++a ++++++G++p+ P++       e  + s+ + e     + +kr+aVvG+G  a e++  +
   CTQ30451.1 123 VEVNGEIITADHILIATGGRPSHPDIPGV----EYGIDSDGFFELP---ALPKRVAVVGAGYIAVELAGVI 186
                  444678999***************98763....4568888888776...789**********999987554 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.9    0.0055       9.9       1      33 [.       6      38 ..       6      44 .. 0.89
   2 ?   -3.8   0.0       2.7   4.9e+03     313     344 ..      72     102 ..      56     107 .. 0.77
   3 ?   -3.2   0.0       1.8   3.3e+03     190     204 ..     130     144 ..     118     154 .. 0.78
   4 ?    6.6   0.1    0.0019       3.5     373     402 ..     274     305 ..     268     312 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0055
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   D + iG+G +G a+  +aa  G+k+a++e ++ 
     CTQ30451.1  6 DYLAIGGGSGGIASINRAAMYGQKCALIEAKEL 38
                   6789*************************9875 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.7
                    EEEE-TT.SSHHHHHHHSHHHHHHHHHCCT.. CS
  FAD_binding_2 313 vyldashgldaegleatleaineeaangldkd 344
                    ++ ++ h +d e+l+a++ a+++ +++ +d  
     CTQ30451.1  72 FDTTINH-FDWEKLVASRSAYIDRIHTSYDNV 102
                    4567788.999999999999999999988855 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.8
                    EEESEEEE-----GG CS
  FAD_binding_2 190 irakavvlatgGfgr 204
                    i+a+++++atgG + 
     CTQ30451.1 130 ITADHILIATGGRPS 144
                    56889999**99984 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0019
                    S-EEEBETTSBE..STTEEESSBTEEE-STCE CS
  FAD_binding_2 373 mgGvetdengrv..ldadgqpipGLYAaGeva 402
                    + Gv+t+++g    ++ +++++pG YA+G  +
     CTQ30451.1 274 ATGVKTNDKGYIivDKFQNTNVPGIYAVGDNT 305
                    68********9887999************877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3582.16
//
Query:       CTQ30452.1  [L=214]
Description: Uncharacterized glutathione S-transferase-like protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-15   56.4   0.0    5.4e-15   55.5   0.0    1.5  1  GST_N     Glutathione S-transferase, N-terminal domain
    5.2e-14   52.4   0.0    1.1e-13   51.3   0.0    1.5  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    1.4e-13   50.9   0.0    2.8e-13   50.0   0.0    1.5  1  GST_N_2   Glutathione S-transferase, N-terminal domain
    4.8e-05   23.5   0.0    7.7e-05   22.8   0.0    1.4  1  GST_C     Glutathione S-transferase, C-terminal domain
    8.5e-05   22.5   0.0    0.00018   21.5   0.0    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain
     0.0026   17.9   0.0     0.0047   17.1   0.0    1.5  1  GST_C_3   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   1.8e-18   5.4e-15       3      76 .]       9      82 ..       7      82 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 1.8e-18
                EEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEETTEEEESHHHHHHHHHH CS
       GST_N  3 ltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedngkkltESraIleYiar 76
                lt ++ r+s+++ +++++ +++g+ y++ ++ +++++ + pe+ +lnp+  vP+L d++++l+ES+ I++Y+ar
  CTQ30452.1  9 LTILGKRSSINVRKVLWTCEEAGLAYQQEDYGSGFKPLDTPEFQRLNPNSLVPVLLDDDFVLWESNSICRYLAR 82
                688999********************************99********************************96 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   3.8e-17   1.1e-13       3      72 ..      13      85 ..      12      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 3.8e-17
                S-TTSHHHHHHHHHHHHHT--EEEE---TTTT...HHHHHHH-TT--SSEEETTS-EEESHHHHHHHHHHHH- CS
     GST_N_3  3 gfpaSpyarrvrlaLnekglpvevvevtpgeh...deellaknplgkvPvLeddgealtdSlaIidyLeelyp 72
                g ++S ++r+v ++++e gl+++ ++   g +    +e+++ np+  vPvL dd+ +l++S +I++yL ++++
  CTQ30452.1 13 GKRSSINVRKVLWTCEEAGLAYQQEDYGSGFKpldTPEFQRLNPNSLVPVLLDDDFVLWESNSICRYLARKAE 85
                5689**********************9766665779********************************99876 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   9.4e-17   2.8e-13       4      69 ..      19      82 ..      16      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 9.4e-17
                HHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHHH CS
     GST_N_2  4 wahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlrylet 69
                 +++vl+++++ gl ++ + + +++k+ ++ +ef rlnp+  VPvL d d  v++eS  I+ryl++
  CTQ30452.1 19 NVRKVLWTCEEAGLAYQQEDYGSGFKPLDT-PEFQRLNPNSLVPVLLD-DDFVLWESNSICRYLAR 82
                689*****************9999*****8.6***************9.67*************86 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.6e-08   7.7e-05      35      93 .]     146     203 ..     118     203 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.6e-08
                 HHHHHHHHH.TSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C  35 lsaleeelk.kqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawlerimarp 93 
                 + ++e++l  +  +++G+++tlADi+l   + +  ++ +a +  + p++ +w+  +++rp
  CTQ30452.1 146 VRIVEAQLQrTGAWIAGERFTLADIVLGLSVHRWKMTPFAHP--EMPGVERWYMALNQRP 203
                 667899999999***************999999998888886..9*************99 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0     6e-08   0.00018       8      67 ..     139     196 ..     132     198 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 6e-08
                 HHHCCHCHHHCTTT---SS..CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHH CS
     GST_C_2   8 leqldaaldaleahLadsp.flfGdqptlaDialapflvrlraagpgfdireaypnlraWl 67 
                  +++  ++  +ea+L     +++G+++tlaDi+l   ++r++  + ++   ++ p++ +W+
  CTQ30452.1 139 IAAWTHCVRIVEAQLQRTGaWIAGERFTLADIVLGLSVHRWKMTPFAH---PEMPGVERWY 196
                 555555677789*9999999*********************9998655...4678888887 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.6e-06    0.0047      33      91 ..     146     204 ..     114     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.6e-06
                 HHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH.TCCCC-HHHHHHHHHHHTSHH CS
     GST_C_3  33 lkyfekvlkkkgggylvgdklTyADlalfqvldgleea.ealkkfpklkalyervearpk 91 
                 ++ +e  l+ ++g +++g+++T+AD++l   ++  + +  a+ ++p + ++y ++++rp+
  CTQ30452.1 146 VRIVEAQLQ-RTGAWIAGERFTLADIVLGLSVHRWKMTpFAHPEMPGVERWYMALNQRPA 204
                 456677777.6777**************99999999885334678999999999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1641.60
//
Query:       CTQ30453.1  [L=397]
Description: putative iron-containing alcohol dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-87  292.5   0.0    4.3e-87  292.3   0.0    1.0  1  Fe-ADH        Iron-containing alcohol dehydrogenase
    6.1e-12   45.8   0.0    9.3e-06   25.5   0.0    2.2  2  Fe-ADH_2      Iron-containing alcohol dehydrogenase
  ------ inclusion threshold ------
      0.024   15.3   0.2       0.24   12.1   0.0    2.5  2  CW_binding_2  Putative cell wall binding repeat 2


Domain annotation for each model (and alignments):
>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.3   0.0   7.3e-91   4.3e-87       1     363 [.      25     387 ..      25     388 .. 0.92

  Alignments for each domain:
  == domain 1  score: 292.3 bits;  conditional E-value: 7.3e-91
                 -SEEEEETTGGGGHHHHHTTT-..EEEEEEEHHHH.HH.THHHHHHHHHCTT-EEEE.EEE-S---HHHHHHHHTTS-TT.--EEEEEESHHHHHHHHH CS
      Fe-ADH   1 PtrivfgkgaleelgellkklgakralivtdkgslkksglldkvlesleeagievtvfdgvepnptleeveeaaalareegadvviavGGGsviDtAKa 99 
                 P +i+fg+g++e+ +  l++ g   +l+v++++   ++ +l++ le l   +++vt+   ++ +p l+++e++++lare+g+ +v+++GGG viD++Ka
  CTQ30453.1  25 PANIRFGRGQAESAAPWLAQQG-GPILLVHGASPQ-RAAFLRQQLETL---QLAVTT-LAISREPWLSDIEQGVQLAREKGIRAVVSLGGGAVIDAGKA 117
                 889******************9.69*****99965.555666666666...888885.569************************************** PP

                 HHHHTT......................--EEEEESS-S-S-TT-SEEEEE.-TTSEEEEE-..SS--SEEEEEHHHHHHS-HHHHHHHHHHHHHHHHH CS
      Fe-ADH 100 ialllanpe.vedyl...gegkakkkkalpliaiPTtaGtGsevtplavitdeeegeklsifdpellPdlaivDpeltltlPkrvtaatglDalahalE 194
                 ia+l+   + v dyl   g+g++ + ++lp++aiPTtaGtG+evt++avi  +e+++k+s++d+++lPdlaivDp+lt ++P+++t ++glDal++++E
  CTQ30453.1 118 IAALVPAAGpVIDYLevvGTGRQLEASPLPFVAIPTTAGTGAEVTKNAVINVPEQQRKVSLRDDRMLPDLAIVDPALTDNAPRSITLSSGLDALTQVIE 216
                 ******8756888888889999999************************************************************************** PP

                 HHHHHT---TTSSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHC.CGGGGGS-HHHHHHHHH........... CS
      Fe-ADH 195 ayvskkanplsdalaleairliaknleravadgedleareqmllastlaglafsnaglgavHalahalgalfgiphglanaillpavlrfna.....ea 288
                   ++++a+p++dal+ +ai   +++l+ ++++   ++ r +m++ s+++gla++naglg+ H+la +lg+l  ++hg++++ llp++l+ n      + 
  CTQ30453.1 217 PWLCSRATPFTDALCQQAIPRGIRALKILMEQE-CPASRDEMAWVSLCGGLALANAGLGVIHGLAGPLGGLSRASHGALCGSLLPFGLALNEsqindPG 314
                 ******************************995.************************************77****************99995554433 PP

                 ....HHHHHHT.......T--HHHHHHHHHHHHHTT---SHHHHT-TT-HHHHHHHHHT-TSGGGGSSS---HHH CS
      Fe-ADH 289 aperlaqlaralggesdeeaaeeliealrellkelglptsLselgvdeedldklaeaalkdrslannpreltaed 363
                  ++r+ ++ r l +   +  ++++ + lre+ ++ gl  +L++lgv +++l+  a aa +++s+++np+ l+ e+
  CTQ30453.1 315 LRQRVNDVRRWLAD-GLDVPVDQVWDSLREWSHRAGLG-TLRDLGVARDALEPAALAASTSSSMKANPVSLSGEQ 387
                 34556666665544.577899*****************.9***********9999999999********999876 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.5e-09   9.3e-06      20      97 ..      47     121 ..      29     129 .. 0.83
   2 !   18.5   0.0   2.2e-07    0.0013      99     250 .]     145     296 ..     124     296 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.5e-09
    Fe-ADH_2  20 kkvllvadentkkaagekveeslkeagikvevveeveeeadleeveklvealreketdlvvavGgGtiiDiakyvsak 97 
                   +llv+++  ++aa   ++++l++ ++ v++++  + e+ l+++e+ v+ +rek++ +vv++GgG +iD++k ++a 
  CTQ30453.1  47 GPILLVHGASPQRAAF--LRQQLETLQLAVTTLA-ISREPWLSDIEQGVQLAREKGIRAVVSLGGGAVIDAGKAIAAL 121
                 4678888888887764..7788888889998886.899*************************************985 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 2.2e-07
    Fe-ADH_2  99 nvpyvsvpTaaSvDGfaspgaslvvd..gkkrtv.akaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaamvqeaae 194
                  +p+v++pT+a        +a + v   ++k+++  +  +P   i+D  +  +APr++++s   D+l +++     + a+ +++ l+++++     a++
  CTQ30453.1 145 PLPFVAIPTTAGTGAEVTKNAVINVPeqQRKVSLrDDRMLPDLAIVDPALTDNAPRSITLSSGLDALTQVIEPWLCSRATPFTDALCQQAIPRGIRALK 243
                 369*********999999999998765589999999999*********************9999**********9****************99999998 PP

    Fe-ADH_2 195 klvedkketealeellealalsgigisrpaSGsEHliSHaldmlalkqalHGeqVG 250
                  l+e ++      e++  ++ +g++ ++++ G  H ++  l  l+  +a HG+ +G
  CTQ30453.1 244 ILME-QECPASRDEMAWVSLCGGLALANAGLGVIHGLAGPLGGLS--RASHGALCG 296
                 8885.5667777888888888888888888888888888887777..777777665 PP

>> CW_binding_2  Putative cell wall binding repeat 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     4e-05      0.24      26      66 ..      36     112 ..      26     116 .. 0.70
   2 ?   -0.3   0.0      0.29   1.7e+03      24      36 ..     361     373 ..     343     393 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4e-05
                   HHHHHHHHHHT--EEEE-..TS.SS.-.HHHHHHH...................................EEEES-TTTS CS
  CW_binding_2  26 LsaaalaakknaPiLLtd..kl.dtal.kalksat...................................vyilGGegvv 66 
                    saa++ a++++PiLL+   ++   a+  +  +++                                   v+ lGG +v+
    CTQ30453.1  36 ESAAPWLAQQGGPILLVHgaSPqR-AAfLR--QQLetlqlavttlaisrepwlsdieqgvqlarekgiraVVSLGGGAVI 112
                   599**************8642222.22222..222345678877777777777777777777777777777788888877 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.29
                   HHHHHHHHHHHHT CS
  CW_binding_2  24 DALsaaalaakkn 36 
                   DAL  aalaa+++
    CTQ30453.1 361 DALEPAALAASTS 373
                   6666666666433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2926.47
//
Query:       CTQ30454.1  [L=550]
Description: cytoplasmic trehalase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.9e-163  543.4   0.1     8e-163  542.9   0.1    1.2  1  Trehalase        Trehalase
     0.0076   15.5   0.0      0.012   14.8   0.0    1.3  1  Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin gly
  ------ inclusion threshold ------
      0.031   14.0   3.5       0.04   13.7   0.1    2.6  3  DUF346           Repeat of unknown function (DUF346)
      0.031   13.0   0.0      0.055   12.1   0.0    1.3  1  Glyco_hydro_36   Glycosyl hydrolase 36 superfamily, catalytic


Domain annotation for each model (and alignments):
>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  542.9   0.1  1.8e-166    8e-163       2     511 ..      71     546 ..      70     547 .. 0.97

  Alignments for each domain:
  == domain 1  score: 542.9 bits;  conditional E-value: 1.8e-166
                 CTTSTCCCCCGCCTS-HHHHHHHHHCHHCCHHEE..TTTTHHHHHHHHCE-SGGGS.EEE-TT-HHHHHHHHHHHCTGGHH.EECCHHCCTTCCCCHTT CS
   Trehalase   2 lfgdkktfvDearlsevdrllrlikaslekaltrridkedlkkfvedtfeetgselerivpkdekeqpeyflkkaedeelrleaeelnklwkalvrkik 100
                  f d+ktf D+a+++++ ++lr++++ +++      +++dl++fved+f+ +         +++++ +      ++d++l    e+++klw+ l+r   
  CTQ30454.1  71 IFADSKTFPDCAPKHDPLDILRNYRKVKRQ------PDFDLRQFVEDNFWLP---------ESQSDIY------ISDPSLT-LKEHIDKLWPVLTR--- 144
                 699**********************99999......89************86.........3333333......3788888.669***********... PP

                 TS-SCE-TTECEEE-TT-EE-SBTTB-S-BCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHSS--SBSBGGGTT---S--HHHHHHHHHHHCHCCH CS
   Trehalase 101 kkvgllpeassllplpkpfvVPGgRFrElYyWDsYfvilGLleskkvdlakgmvenfiyliekYGkilNgnRsYYlsRSQPPlltdmvlrvyektedda 199
                  +++++  +ssll+lp+ ++VPGgRF+E+YyWDsYf++lGL+es++ dl k+m++nf++lie+YG+i+NgnR+YYlsRSQPP+++ mv+++ e+  + +
  CTQ30454.1 145 -EPQDHIPWSSLLALPQAYIVPGGRFSETYYWDSYFTMLGLAESGREDLLKCMADNFAWLIETYGHIPNGNRTYYLSRSQPPVFALMVELFEED--GVR 240
                 .****************************************************************************************99999..999 PP

                 HHHHHHHHHHHHHHCCTT.......TCCETTCCC-CTC-EEE--SSSTTS-TCCCHHHHHHHHHCTTHCCHHHHHCCCCHHHHHCCHHCHHHHCCCCTT CS
   Trehalase 200 llravlaalkkeyefwma.......eqrldevtklskryllnrygvpeetprpesyledketaeklkkerkkeevyrelkaaaesgwdlssRwlresgh 291
                  ++++l++lk+e++fwm+       +q+ ++v+++ +++llnry+++++tpr+es++ed+eta + +  r+++evyr+l+a+a+sgwd+ssRwlr+   
  CTQ30454.1 241 GAKRYLDHLKMEHAFWMDgaeslipHQAYRHVVRMPDGSLLNRYWDDRDTPRDESWREDVETARHSG--RPANEVYRDLRAGAASGWDYSSRWLRD--- 334
                 9****************************************************************99..***************************... PP

                 -S.TCCCCTGGGEE-HHHHHHHHHHHHHHHHCCCHCC-CCHHHHHHHHHHHHHHHHHHHCEETTTTEE--EETTTTEE----BGGGGHHHHCT-S-HHH CS
   Trehalase 292 dtgellelrtaklvpvDLNallyklekdiaefedklgdsetseefeekaekrkkaidkvLWneeagvylDYdlkkkkqtnyesatnlvpLwaglaskeq 390
                   ++l+++rt++++p+DLNa+l+kle++ia+++   gd et++ f++ka+ r++a++++LW++e+g++ DYd++ ++q   +sa+++v L++gla++eq
  CTQ30454.1 335 -ITRLASIRTTQFIPIDLNAFLFKLETTIANLSGLKGDRETEAAFRQKAQDRRAAVNRYLWDDENGCFRDYDWR-REQLALFSAASIVTLYVGLATHEQ 431
                 .788*********************************************************************9.78899******************* PP

                 HHHHHHHCHHHHCCCCCEESCCCC-SBSSS-SSTTSTTEEEHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHCTSEBSCEETTSTSTTBTT-S CS
   Trehalase 391 aaklvakvlekleesgllvaegglgtsllksgrQWDyPngWaPlqilaveglerygeeelaerlaerwlktvtkafsdegklvEKYdvtreaeygGggg 489
                      a++l+++ +++ll+ +gg+ +++++sg+QWD+PngWaPlq++a++g++ryg++ l +++a++wl+tv++++++++kl+EKY++ +    +Gggg
  CTQ30454.1 432 -----AERLADAVRARLLT-PGGIMATEYESGEQWDKPNGWAPLQWMAIQGFKRYGQDPLGDEIAWSWLQTVNHFYKQHHKLIEKYHIATGVPHEGGGG 524
                 .....899***********.**********************************************************************99999**** PP

                 SSSTTCSBHHHHHHHHHHHCCH CS
   Trehalase 490 eyvlqeGFGWvNgvvlelLell 511
                 ey+lq+GFGW+Ngvv +l+ l+
  CTQ30454.1 525 EYPLQDGFGWTNGVVRRLIGLY 546
                 ***************9999877 PP

>> Bac_rhamnosid6H  Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.8e-06     0.012     172     251 ..     352     439 ..     319     452 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.8e-06
                      HHHHHHHHHHHHHHHHHTTS..--HHHHHHHHHHHHHHHHHHB.-TTS.........-BTT--....HHHHHHHHHTT-S-GGGH.HHHHHHH CS
  Bac_rhamnosid6H 172 taylvrslklvakiaellgkeedakkyaalaeelkaafnkkyldsetg.........svandt....qtanalpLafglvpeaeraakvaerl 251
                      +a+l++   ++a+++ l g  e++++++++a++ +aa n+ ++d+e+g         +          +a +++L++gl  +++  ++ a+++
       CTQ30454.1 352 NAFLFKLETTIANLSGLKGDRETEAAFRQKAQDRRAAVNRYLWDDENGcfrdydwrrE----QlalfSAASIVTLYVGLATHEQA-ERLADAV 439
                      89**********************************************7776654432....24444788899999999944444.5444443 PP

>> DUF346  Repeat of unknown function (DUF346)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.15   6.9e+02      13      21 ..     251     259 ..     250     268 .. 0.79
   2 ?   13.7   0.1   8.9e-06      0.04       6      29 ..     273     296 ..     271     309 .. 0.92
   3 ?   -3.7   0.2       2.5   1.1e+04      18      29 ..     394     406 ..     393     407 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.15
      DUF346  13 LyHwWWdpg 21 
                 + H +W++g
  CTQ30454.1 251 MEHAFWMDG 259
                 89****976 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 8.9e-06
      DUF346   6 ArgtdGtLyHwWWdpgdglkradW 29 
                  r++dG+L  ++Wd++d+++ ++W
  CTQ30454.1 273 VRMPDGSLLNRYWDDRDTPRDESW 296
                 599********************* PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.5
      DUF346  18 Wdpgdg.lkradW 29 
                 Wd+++g  +  dW
  CTQ30454.1 394 WDDENGcFRDYDW 406
                 9999998888888 PP

>> Glyco_hydro_36  Glycosyl hydrolase 36 superfamily, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.2e-05     0.055     204     307 ..     354     450 ..     348     462 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.2e-05
  Glyco_hydro_36 204 llylalkeflelakkkgeeeeaekaekaadklreaiekyaWd.GewflRaytkdgekiGskeneegkiflesqslavlsGigkderakvaldsve 297
                     +l+    + ++l+  kg+ e    ++++a++ r a+++y+Wd  +   R y+           e   +f+ +  +++  G +++e+a+   d+v+
      CTQ30454.1 354 FLFKLETTIANLSGLKGDRETEAAFRQKAQDRRAAVNRYLWDdENGCFRDYD--------WRREQLALFSAASIVTLYVGLATHEQAERLADAVR 440
                     45566677889999***************************95566889999........4555667899999999999**************** PP

  Glyco_hydro_36 298 kyLdteyGlv 307
                       L t+ G++
      CTQ30454.1 441 ARLLTPGGIM 450
                     ***9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4258.40
//
Query:       CTQ30455.1  [L=189]
Description: putative acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-23   84.0   0.0    1.8e-23   83.7   0.0    1.1  1  Acetyltransf_3  Acetyltransferase (GNAT) domain
    1.6e-08   34.9   0.0    1.8e-08   34.7   0.0    1.1  1  Acetyltransf_4  Acetyltransferase (GNAT) domain
    1.2e-07   32.0   0.0    1.5e-07   31.6   0.0    1.2  1  Acetyltransf_1  Acetyltransferase (GNAT) family
    4.2e-07   29.7   0.0    1.2e-06   28.2   0.0    1.7  2  Acetyltransf_8  Acetyltransferase (GNAT) domain
     0.0074   16.2   0.0      0.011   15.6   0.0    1.3  1  FR47            FR47-like protein


Domain annotation for each model (and alignments):
>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   5.1e-27   1.8e-23       1     138 []      20     158 ..      20     158 .. 0.89

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 5.1e-27
  Acetyltransf_3   1 RLlLrplteeDlealfelrsdpevmrylpepltleeaeewlera...waeeseeegygwaivl.kdtgv.iGsvglrdleeedeeaelgymlaps 90 
                     RL   pl+ +D   +++l +dp+vm y+  p++ ++ +e ++++   w+++  +e + +++v  + t   +G  g+++ +++   ae+g+++ap+
      CTQ30455.1  20 RLRCSPLQLDDWSFFLSLQQDPQVMLYVADPRPQAAIREAFDSRlppWTPG--DEHWLCLVVRdRLTHTpLGLTGYQHHQRDI--AEVGFLFAPA 110
                     78889******88888*********99999************998888875..35566555444666655*******877775..9********* PP

  Acetyltransf_3  91 fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGfe 138
                     ++g+Gy+ e +ral++yaf++ g++rl a + + NeaS ++l k+Gf+
      CTQ30455.1 111 AQGRGYGYESLRALCDYAFTTGGVRRLTASVTAGNEASKQLLLKAGFR 158
                     ***********************************************6 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0     5e-12   1.8e-08      73     152 ..      96     175 ..      58     178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 5e-12
  Acetyltransf_4  73 akdwkaelsvylaerdnnkeglgrelidaleqvl.keqnienllaeiaspnensiqfhkalGFelvgifkkcikkngrwiD 152
                      ++  ae+ +++a  +++ +g+g e + al +++    ++++l+a++ + ne+s+q++ + GF+l+g++++ +  ngrw +
      CTQ30455.1  96 HQRDIAEVGFLFA-PAAQGRGYGYESLRALCDYAfTTGGVRRLTASVTAGNEASKQLLLKAGFRLEGELRENYWLNGRWHN 175
                     4678899*****9.79*********9999999999********************************************87 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   4.3e-11   1.5e-07      40     117 .]      80     157 ..      31     157 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 4.3e-11
                     ET...TEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTE.SEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  40 ed...geliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegi.kkivlaveedndaairlYeklGF 117
                     +d    +++G  ++   +      ++  ++  +p+++g+G+G + l+al ++a+  g+ +++ + v++ n+a+  l+ k GF
      CTQ30455.1  80 RDrltHTPLGLTGYQHHQR----DIAEVGFLFAPAAQGRGYGYESLRALCDYAFTTGGvRRLTASVTAGNEASKQLLLKAGF 157
                     3333366777776666666....566669999************************665******************99**9 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.57     2e+03     108     124 ..      37      53 ..      32      58 .. 0.80
   2 !   28.2   0.0   3.5e-10   1.2e-06      78     143 ..      99     163 ..      73     164 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.57
                     HHCCTT--EEEE--BTT CS
  Acetyltransf_8 108 lfadprtrrvvvEPdvr 124
                     l +dp+++  v++P+++
      CTQ30455.1  37 LQQDPQVMLYVADPRPQ 53 
                     56799999999999976 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 3.5e-10
                     T-EEEEEEESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEEEE CS
  Acetyltransf_8  78 gdrGiHlligeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekekev 143
                         + +l ++a++ g+g++ + lral++y+f+  ++rr  +   + Ne++ +ll kaGf+ e+e+
      CTQ30455.1  99 DIAEVGFLFAPAAQ-GRGYGYESLRALCDYAFTTGGVRRLTASVTAGNEASKQLLLKAGFRLEGEL 163
                     44457778886665.**********************************************99986 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.2e-06     0.011      30      85 ..     108     168 ..      95     169 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.2e-06
                 -GGG-SSSHHHHHHHHHHHHHHHS-..S-EEEEEETT-HHHHHHHHHHT-EEE...EEEEE CS
        FR47  30 lpehrrrGlgsrlvkalakeiaerg..ktvllvvvasNtpsirlyeklGfeki...eetew 85 
                  p +++rG+g    +al     + g    +++ v a+N++s +l+ k Gf++    +e++w
  CTQ30455.1 108 APAAQGRGYGYESLRALCDYAFTTGgvRRLTASVTAGNEASKQLLLKAGFRLEgelRENYW 168
                 6899*************99888866346899********************9877788888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      188  (0.0104858); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1436.68
//
Query:       CTQ30456.1  [L=252]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-53  181.3   0.5    2.6e-53  181.0   0.5    1.0  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    3.7e-44  150.5   0.1    4.6e-44  150.2   0.1    1.1  1  adh_short     short chain dehydrogenase
    1.1e-10   41.8   0.2    1.6e-10   41.2   0.2    1.2  1  KR            KR domain
     0.0096   15.3   0.0      0.014   14.8   0.0    1.1  1  DUF1776       Fungal family of unknown function (DUF1776)
  ------ inclusion threshold ------
       0.11   11.9   0.2       0.58    9.6   0.1    1.9  2  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.0   0.5   7.4e-57   2.6e-53       3     233 ..      12     250 ..       9     251 .. 0.92

  Alignments for each domain:
  == domain 1  score: 181.0 bits;  conditional E-value: 7.4e-57
                   TTSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHH....HHH..SSEEEEEE-----EGCSS-GGGH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgae.vlecDVtdeeqvealveevv....ekf..gklDilvnnagiapklkgpflet 90 
                    +g+G+ +A +la++G +++lt+ ++++   + v+e+++++ ++ +l+++V d ++ +a+++ev+    +k+   ++D+l+nnagi  +  +pf+et
    CTQ30456.1  12 SRGLGKNAALKLAAKGTDILLTYHSNRQaaLDVVAEIEQKGVKAaALALNVGDSTTFDAFASEVAqvlaQKWgrTTFDYLLNNAGIGLN--APFAET 106
                   59***********************999855777888777555535*******999998887765111167855569************..****** PP

                   -HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTG.GGGSTTHH CS
  adh_short_C2  91 sreefdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTla.asgikgfd 186
                   s+++fd+ +++++++ f l++++lpl+++gg+i+n+ss  a+ ++p+y+ay+a K+a+e ltry A+elg +gi vN ++pg+i+T+    +++++ 
    CTQ30456.1 107 SEAQFDELMNIQFKGPFFLTQRLLPLLQDGGRILNVSSGLARFALPGYAAYAAMKGAMEVLTRYQAKELGGRGISVNIIAPGAIETDFgGGEVRDNA 203
                   ****************************************************************************************7778999** PP

                   HHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGGGTT--SEEEEESTTG CS
  adh_short_C2 187 elleelearaplgrlgtpeevaeaalfLasdeasyitGqtlvvDgGl 233
                   e+ ++++a++ lgr+g p+++++a++ L+sde ++++ q + v gG+
    CTQ30456.1 204 EVNRHIAAQTALGRVGLPDDIGDAIAALLSDELAWMNAQRVEVSGGM 250
                   **********************************************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   0.1   1.3e-47   4.6e-44       2     188 ..       5     196 ..       4     203 .. 0.94

  Alignments for each domain:
  == domain 1  score: 150.2 bits;  conditional E-value: 1.3e-47
                 EEEEESTTSHHHHHHHHHHHHTT-EEEE.EESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH......SSESEEEE---SS--SSG CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvv.vdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl......gkldvLvnNAGitgsgpf 93 
                 ++lvtG+s+G+G++ a +la++G ++++ + ++ +++  v++e++++g ka a++++v d++  +a+ +++++ l       + d L nNAGi  ++pf
  CTQ30456.1   5 IALVTGGSRGLGKNAALKLAAKGTDILLtYHSNRQAALDVVAEIEQKGVKAAALALNVGDSTTFDAFASEVAQVLaqkwgrTTFDYLLNNAGIGLNAPF 103
                 89**************************9999999999**************************99999987766666677789*************** PP

                 GGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  94 selseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 +e+se+++++++++ ++g+f lt+ +lp +  q +GrI nvsS  ++ +++g+aaY+A K+a++ ltr  akel  +gi+vn++aPG+++Td+  
  CTQ30456.1 104 AETSEAQFDELMNIQFKGPFFLTQRLLPLL--QDGGRILNVSSGLARFALPGYAAYAAMKGAMEVLTRYQAKELGGRGISVNIIAPGAIETDFGG 196
                 *****************************5..69*********************************************************9865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.2   4.6e-14   1.6e-10       4     175 ..       7     184 ..       5     187 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 4.6e-14
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHH...HHHHHHHS...S---EEEE--------- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdaveal...leeikaee...ppikGvihaAgvlrdkl 96 
                 l+tGG  gLG+  a  la+kg   l+ +  s  +++++ + +ae+e++g++  ++a+ v d++   a    ++++ a++    +    ++ Ag+  +++
  CTQ30456.1   7 LVTGGSRGLGKNAALKLAAKGTDILL-TYHS--NRQAALDVVAEIEQKGVKAAALALNVGDSTTFDAFaseVAQVLAQKwgrTTFDYLLNNAGIGLNAP 102
                 9********************76544.4444..46778889******************9998777772224455555566678899************ PP

                 TTT--HHHHHHHHTTTTHHHHHHHHHTTT..S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH.HHHTEEEEEE CS
          KR  97 leemtaedleqvlapKvkGawnLhelled..esldffvlfSSiagllgsagqanYaaaNaflDalaeyrrs.qglpavsinw 175
                 ++e+++++++++++  +kG   L + l +  ++   ++ +SS  + +  +g a+Yaa    ++ l +y+++ +g +++s+n+
  CTQ30456.1 103 FAETSEAQFDELMNIQFKGPFFLTQRLLPllQDGGRILNVSSGLARFALPGYAAYAAMKGAMEVLTRYQAKeLGGRGISVNI 184
                 ************************999997888999*******************************987516888888886 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.8e-06     0.014     106     201 ..     101     191 ..      99     214 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.8e-06
     DUF1776 106 gpietiplsswaselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnld 201
                  p+++ +++++ +++n ++  p+ ++q+llpll+    +  +i+ v+ + ++   lp +a  a + +a++ l++  ++el+  +i+v  i  G ++
  CTQ30456.1 101 APFAETSEAQFDELMNIQFKGPFFLTQRLLPLLQ----DGGRILNVSSG-LARFALPGYAAYAAMKGAMEVLTRYQAKELGGRGISVNIIAPGAIE 191
                 58899999**************************....57888888766.578899999999*************************999999885 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00016      0.58       1      61 [.       6      73 ..       6      98 .. 0.80
   2 ?    0.1   0.0      0.13   4.5e+02     141     168 ..     156     183 ..     149     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00016
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHH CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfk 61
                +lVtG++  +G++ + +l++kg +++   + +++ +    +++           l++ d++ ++++ +
  CTQ30456.1  6 ALVTGGSRGLGKNAALKLAAKGTDILLTYHSNRQAALDVVAEIeqkgvkaAALALNVGDSTTFDAFAS 73
                59****************************98888777766667877777555666666665555555 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
   Epimerase 141 pYaaaKlageklveayaaqyglnaiilr 168
                 +Yaa K a+e l+++ a++ g + i+++
  CTQ30456.1 156 AYAAMKGAMEVLTRYQAKELGGRGISVN 183
                 7*************99999887777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1861.48
//
Query:       CTQ30457.1  [L=299]
Description: putative DNA-binding transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-44  149.8   0.2    3.3e-43  147.5   0.1    1.8  2  LysR_substrate  LysR substrate binding domain
      6e-20   71.0   0.9      2e-19   69.3   1.0    1.8  2  HTH_1           Bacterial regulatory helix-turn-helix protein
  ------ inclusion threshold ------
      0.046   13.5   0.1       0.21   11.4   0.1    2.1  2  HTH_IclR        IclR helix-turn-helix domain


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.073   4.4e+02     142     171 ..      36      65 ..      30      73 .. 0.84
   2 !  147.5   0.1   5.6e-47   3.3e-43       3     205 ..      89     291 ..      87     295 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.073
                     HHHHHHTTS-BEEEEGGGHHCCCHTTTEEE CS
  LysR_substrate 142 llalvaaGlGiallprsavrdeladgrlva 171
                      +++ ++ lG+ ll r + r  l ++++v+
      CTQ30457.1  36 QIQALESHLGVRLLHRTTRRVQLTQDGMVY 65 
                     678999999999999999999999998887 PP

  == domain 2  score: 147.5 bits;  conditional E-value: 5.6e-47
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSSE CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gepv 96 
                     + +grLr+ +p  +a   + p l+ f+++yP++elel+++d  +l+d ++eg +D+++r g + dsgl+arpL++   + +aspd+ Lar g p 
      CTQ30457.1  89 SISGRLRVDMPVGFAKKMVIPHLPTFLQQYPGIELELSSSD--RLVDVIREG-FDCVVRVGALKDSGLIARPLGKLTQINCASPDY-LARfGYPQ 179
                     679**************************************..*********.*********************************.******** PP

                     CGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEEC...EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEE CS
  LysR_substrate  97 sledLadeplilleegsglrdlledalreaglkp...rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvy 187
                     sledLad+ li++    g r    +++ +  +++    + l+vns+e+ +a++ aGlGi  +pr  vr++l++g+l+   lp+++++  +++l+y
      CTQ30457.1 180 SLEDLADHALIHYASTLGVRPPGFEVMIDGAVRWvktGGILTVNSTETYQAACIAGLGIIQVPRTGVREALRAGDLI-EILPQYRAEpLPVSLIY 273
                     ******************9999999999999999999999*************************************.9999999999******* PP

                     ETTCCCHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflr 205
                     +++r ls++v  f+++l 
      CTQ30457.1 274 PHRRNLSRRVNLFMEWLG 291
                     ****************95 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   1.0   3.4e-23     2e-19       2      59 ..       5      62 ..       4      63 .. 0.97
   2 ?   -2.1   0.0      0.63   3.7e+03      35      48 ..     179     192 ..     179     200 .. 0.71

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 3.4e-23
                HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                ++++lf+ va+ +sf+rAAe L l   +vsrqi++LE++lgv+L++Rt+r+++LT+ G
  CTQ30457.1  5 HAMQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQDG 62
                689*****************************************************99 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.63
                 HHHHHHHTS-SEEE CS
       HTH_1  35 krLEeelgvpLfeR 48 
                 ++LE++ ++ L++ 
  CTQ30457.1 179 QSLEDLADHALIHY 192
                 57999999999985 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   3.5e-05      0.21      20      45 ..      18      43 ..       7      50 .. 0.89
   2 ?   -1.9   0.0      0.52   3.1e+03      11      28 ..     171     188 ..     170     195 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.5e-05
                BHHHHHHHHTS-HHHHHHHHHHHHHT CS
    HTH_IclR 20 tlselArrtglpkStvhRlLqtLvel 45
                ++s  A+ ++lpk +v+R +q L+ +
  CTQ30457.1 18 SFSRAAETLALPKGSVSRQIQALESH 43
                78999******************987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.52
                 T-CTTBSS-BHHHHHHHH CS
    HTH_IclR  11 alaeapqeltlselArrt 28 
                 +la+ + + +l +lA+++
  CTQ30457.1 171 YLARFGYPQSLEDLADHA 188
                 667767777899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2410.85
//
Query:       CTQ30458.1  [L=343]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-50  170.5  16.8      6e-50  170.3  16.8    1.1  1  Virul_fac_BrkB  Virulence factor BrkB
  ------ inclusion threshold ------
      0.019   14.9   2.2          1    9.4   0.1    2.7  2  DUF5510         Family of unknown function (DUF5510)
        4.8    7.4  13.1        0.7   10.1   6.7    2.7  3  GtrA            GtrA-like protein
        7.3    6.8   9.8       0.42   10.8   3.4    2.2  3  DUF4381         Domain of unknown function (DUF4381)


Domain annotation for each model (and alignments):
>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.3  16.8   1.3e-53     6e-50       5     256 ..      72     331 ..      68     333 .. 0.90

  Alignments for each domain:
  == domain 1  score: 170.3 bits;  conditional E-value: 1.3e-53
  Virul_fac_BrkB   5 lsllAaalayytllSlfPlllvllavlgl.lglddelqeqlldllaevlpe.gaaevvedil.qrllnqaslgllglavllwsasggvsalrral 96 
                     ++++ aa++y+++lS++P+l+v++a +g+ l+ ++ l ++++d + +++ + + a+++++++ +++++++++gl+gl+v l+s+++++ +lr+a+
      CTQ30458.1  72 GNQFGAAITYFSFLSMIPILMVSFAAAGFvLAWHPTLLQDIFDKILQNVSDpTLAATLKNTInTAVQQRTAVGLVGLLVALYSGINWMGNLREAI 166
                     7899*************************877799*************9987899*******44666666************************* PP

  Virul_fac_BrkB  97 nk....iygv..eesrsflrkrllsllllllllvllllslvlsvflqslllasapllglglelsell..llqllrwlvallllvlafallYrvlp 183
                     ++    ++++  ++ +++++k++++l+ l++llv+l+++l ++++++s++++++  ++l l+  e+l  +++l++++++++ ++l+f+++++ lp
      CTQ30458.1 167 RAqsrdVWERrpQDEEKIWVKYFRDLISLIGLLVALIITLSITSVAGSAQQMII--SALYLDNIEWLkpAWRLIGLAISIFANYLLFFWIFWRLP 259
                     99766677776655667**********************************997..33334445566678************************* PP

  Virul_fac_BrkB 184 nvkvrlraalpGallaallwllvkilfslylsnfasynaiYG.slgaliilllWlylsalilLlGaelnaelqe 256
                     ++++r +a++ G+l+aa+++++ ki++++ l + +  ++  G ++g++++l+ ++y++a ++L++a+++a+ ++
      CTQ30458.1 260 RHRPRRKALFRGTLIAAIGFEIIKIVMTWTLPALV--KSPSGaAFGSVLGLMAFFYFFARLTLFCAAWIATAEY 331
                     ********************************987..788888***************************9887 PP

>> DUF5510  Family of unknown function (DUF5510)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00023         1      36      62 .]      72      98 ..      66      98 .. 0.92
   2 ?    4.3   0.3    0.0087        39      10      48 ..     280     314 ..     278     328 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00023
     DUF5510 36 GtilGlacayftykyiipifiaslnaa 62
                G  +G a +yf++  +ipi++ s+ aa
  CTQ30458.1 72 GNQFGAAITYFSFLSMIPILMVSFAAA 98
                777899*****************9987 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0087
     DUF5510  10 diikiviilGivilifspakfriiviGtilGlacayfty 48 
                 +iikiv+   +  l+ sp+       G++lGl  a+f +
  CTQ30458.1 280 EIIKIVMTWTLPALVKSPSGA---AFGSVLGLM-AFFYF 314
                 69****************874...679999996.44433 PP

>> GtrA  GtrA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.68     3e+03      13      30 ..      80      97 ..      57     118 .. 0.58
   2 ?    8.6   3.6   0.00045         2      69     116 ..     208     255 ..     170     256 .. 0.70
   3 ?   10.1   6.7   0.00016       0.7       7     116 ..     211     320 ..     207     321 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.68
        GtrA 13 dlallllllellglsyll 30
                 ++ +l ++ +l +s ++
  CTQ30458.1 80 TYFSFLSMIPILMVSFAA 97
                222222222222222222 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00045
        GtrA  69 lvsllglllnllilwllveklgleallaklvgiivalvlnyvlsklfv 116
                 + s++g + +++i++l ++ +++ +  + l+g+++ ++ ny+l  ++ 
  CTQ30458.1 208 ITSVAGSAQQMIISALYLDNIEWLKPAWRLIGLAISIFANYLLFFWIF 255
                 445666666666666666666666666***************976554 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00016
        GtrA   7 vlgtlvdlallllllellglsyllAnaiafivailfnFilnrrwtFkdrekakllkqflkFvlvsllgl.llnllilwllveklgleallaklvgiiva 104
                 v+g + ++++ +l l ++++   + ++i+  ++i  n++l   + ++  +++++ k +++  l++++g+ +++++++w l   ++ ++   +++g +++
  CTQ30458.1 211 VAGSAQQMIISALYLDNIEWLKPAWRLIGLAISIFANYLLFFWIFWRLPRHRPRRKALFRGTLIAAIGFeIIKIVMTWTLPALVKSPS--GAAFGSVLG 307
                 667777888888888888888888899**************99999999*9999*********9999995667777777777777655..555655555 PP

        GtrA 105 l.vlnyvlsklfv 116
                 l ++ y++ +l  
  CTQ30458.1 308 LmAFFYFFARLTL 320
                 5277777777765 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       2.2     1e+04      69      78 ..      34      43 ..      19      63 .. 0.53
   2 ?   -3.0   0.1       1.7   7.8e+03      90      98 ..     151     159 ..     125     179 .. 0.55
   3 ?   10.8   3.4   9.4e-05      0.42      11      52 ..     227     268 ..     224     276 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.2
     DUF4381 69 laalselLkr 78
                 +++s+ Lk 
  CTQ30458.1 34 GQKASQALKT 43
                3333333333 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.7
     DUF4381  90 agltGeaWl 98 
                 a  +G +W+
  CTQ30458.1 151 ALYSGINWM 159
                 222233333 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 9.4e-05
     DUF4381  11 pvswwPpapGwwlllaalll.llllvlalwllrrrkrnrreAl 52 
                 +++w  pa+    l++ +++  ll+++++w+l r++  rr+Al
  CTQ30458.1 227 NIEWLKPAWRLIGLAISIFAnYLLFFWIFWRLPRHRP-RRKAL 268
                 67899999888888877777************99986.88887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 2707.98
//
Query:       CTQ30459.1  [L=440]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-32  110.6  32.3    7.2e-23   81.2   9.5    2.2  2  Sugar_tr  Sugar (and other) transporter
    2.9e-27   95.5  60.5    6.2e-15   55.0  28.6    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   9.5     8e-27   7.2e-23       3     198 ..      24     226 ..      22     236 .. 0.87
   2 !   35.9  14.9   4.4e-13     4e-09     273     444 ..     271     439 ..     226     440 .] 0.68

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 8e-27
                 HHHHHHH.HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT. CS
    Sugar_tr   3 lvaalgg.llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk. 99 
                 +va+l g  ++ +d++++++++ +   + +f +  +     +++++s ++++i++v + iGs ++g +gdr+GRk +l+++ + + i++v++++ +g+ 
  CTQ30459.1  24 VVASLIGtAIEFFDFYIYATAAVIVFPHIFFPQGDAA----AATLQSLATFAIAFVARPIGSALFGHFGDRVGRKVTLVASLLTMGISTVVIGLLPGYe 118
                 6777777688888988888877766644555444444....35789**************************************************998 PP

                 ....SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-.....TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 100 ....nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn.....adgwrillglqlvpallllilll 189
                      +  +l+++R+  G+g+G++ + + +++ E+Ap+++R   +s+ ql+  +G+++a ++ l l+         ++gwr+++ +++v+ ++ l++++
  CTQ30459.1 119 sigiVAPMLLALARFGQGLGLGGEWGGAALLATENAPARKRALYGSFPQLGAPIGFFFANGTFLLLSWLLTdqqfmEWGWRVPFIFSAVLVIIGLYVRV 217
                 8887778888899***************************************************9954433369************************* PP

                 GS---HHHH CS
    Sugar_tr 190 flPESPryl 198
                  l E+P + 
  CTQ30459.1 218 SLHETPVFA 226
                 ******996 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 4.4e-13
                 HHHHTTTHH.HHSS-THH.HHHHHHHHHHHHHHHHHH.HHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTT CS
    Sugar_tr 273 imyysptif.enlglsks.llvtiivgvvnfvatfva.iflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwg 368
                  m +s+    + lgl    +l+ +++ v+ f + + +  +l d fGRR+ +++ +++m+i+f++++  + +l  +  +   ++ +f++l + l +l++g
  CTQ30459.1 271 SMTFSTGAApNGLGLPRNeVLWMLMMAVIGFGVMVPVaGLLADAFGRRKSMII-ITTMIILFALFA--FKPLLGS--GNPLLVFAFLLLGLSLMGLTFG 364
                 334444333133555555899999999999966655527*********87666.566777777776..5666665..4689999999999********* PP

                 HHHHHHHHHHSHTTTHHHHHHHHHHHHHHH.HHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT-- CS
    Sugar_tr 369 pvpwvlvsElfpqsvRskalaiavavnwla.nflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrt 444
                 p+   l++Elfp++vR+++++++++v+ +    +  ++  ++++++g + v+ + a++a+l +++ ++ + et +++
  CTQ30459.1 365 PMG-ALLPELFPTEVRYTGASFSYNVSSILgASVAPYIAAWLQGNYGLAAVGTYLAAMAAL-TLIALLLTHETRHQS 439
                 **9.566*****************98766515688899*********77777776666655.666777777877766 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0  28.6     7e-19   6.2e-15       3     241 ..      29     275 ..      27     286 .. 0.70
   2 !   46.4  28.3   2.8e-16   2.5e-12      12     174 ..     267     434 ..     264     440 .] 0.82

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 7e-19
       MFS_1   3 laaflsalarsilgpalplal......aedlgispseigl.lltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfa......sslw. 86 
                 +++++ +++++i+++a+ +        + d  ++++ ++l  +++ +++  ++s ++G+++dr+Gr+ +l+++ll+++++ ++++l++      +  + 
  CTQ30459.1  29 IGTAIEFFDFYIYATAAVIVFphiffpQGDA-AAATLQSLaTFAIAFVARPIGSALFGHFGDRVGRKVTLVASLLTMGIStVVIGLLPgyesigIVAPm 126
                 7788888888887777764223445554442.455556664566688899******************************6666666234344444677 PP

       MFS_1  87 lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.........Wravfyilaivsllafvlfllllpeep 176
                 ll+++r+ qGlg g+ + ++a l+++ +p ++r+++ ++ ++g+ +G+ ++ +   ll+ +           Wr++f++ a++ +++     l+++++ 
  CTQ30459.1 127 LLALARFGQGLGLGGEWGGAALLATENAPARKRALYGSFPQLGAPIGFFFANGTFLLLSWL-LtdqqfmewgWRVPFIFSAVLVIIG-----LYVRVSL 219
                 7*************************************************98777766622.2578889999**************9.....6777777 PP

       MFS_1 177 perkrkspkeeekgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls 241
                 +e + ++++      ++++++ +++ ll++ v    +++ +++ +++++l++ +++y    + +s
  CTQ30459.1 220 HETPVFAKVAA----AKKQVKIPLGTLLTKHVRV-TVLGTFIM-LATYTLFYIMTVY---SMTFS 275
                 77777777777....4444444477777777442.22222222.1333333333333...33333 PP

  == domain 2  score: 46.4 bits;  conditional E-value: 2.8e-16
       MFS_1  12 rsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fa.sslwlllvlrvlqGlga.galfpa 105
                 +++++++++  a  + lg+   e+ ++l +  +g++v+++++G l+d fGrr+ +++  ++ +l++l+++  +  s+ +ll+++ +l Gl   g+ f  
  CTQ30459.1 267 MTVYSMTFSTgAAPNGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMIIITTMIILFALFAFkpLLgSGNPLLVFAFLLLGLSLmGLTFGP 365
                 555666666666668899***********************************77777777777735555542269999******************** PP

       MFS_1 106 gaaliadwfpk.eergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpe 174
                 ++al+ ++fp   + + a   +++++ lGa ++p ++++l  ++g  av   la++++l ++ +lll  e
  CTQ30459.1 366 MGALLPELFPTeVRYTGASFSYNVSSILGASVAPYIAAWLQGNYGLAAVGTYLAAMAALTLI-ALLLTHE 434
                 ***********7788888888999*********************99997777777777755.2233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3453.53
//
Query:       CTQ30460.1  [L=683]
Description: putative outer membrane biogenesis protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-151  506.8   0.0   1.2e-151  506.6   0.0    1.0  1  AsmA      AsmA family
    1.3e-17   64.1   5.9    1.2e-15   57.7   2.5    3.2  3  AsmA_2    AsmA-like C-terminal region
  ------ inclusion threshold ------
      0.021   15.0   0.9         23    5.1   0.0    4.2  5  DUF748    Domain of Unknown Function (DUF748)


Domain annotation for each model (and alignments):
>> AsmA  AsmA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  506.6   0.0  1.9e-155  1.2e-151       1     607 [.       1     579 [.       1     580 [. 0.97

  Alignments for each domain:
  == domain 1  score: 506.6 bits;  conditional E-value: 1.9e-155
        AsmA   1 MkkalkilllilivLlLLlvlliaiialfdpnnykptlqqkvkeatnrplaiegdig............rsllPwptlsLsdiklaspegakkpelvsv 87 
                 M++ +k l++i  ++lLL+vl ++++a+fd+n++kpt++qkv++++nrp+ai+gd+g            rs++Pwp+++++di l++p+ +++++++++
  CTQ30460.1   1 MSRTRKTLVIITGTILLLIVLFFIVLATFDWNRLKPTINQKVSAELNRPFAIRGDLGvvwerqpdergwRSWIPWPHVHAEDIVLGNPPAIPQVTMIHL 99 
                 999************************************************************************************************ PP

        AsmA  88 eqveisLsplpLlrkqieiasikldgpslslerlkdgkknwqeliqnnqnaasnantqqkqptqtraalsldigeikvsngkvtyddkasekilndidl 186
                 ++ve++L+pl+Ll+k++ +++ikl++p+++l+rl++ ++nw++ ++ ++++            + ++ +s+++++i ++ g++++ddk   +     d+
  CTQ30460.1 100 PRVEATLAPLALLSKTVYLPWIKLEQPDVRLIRLAEDNNNWTFQLAGDKRTSGD---------SAPSSWSFRLDNILFDRGTIAIDDKITRS-----DI 184
                 ***********************************************9999888.........999**************************.....** PP

        AsmA 187 elqvsalkgpslawrkikisGkleqdnqsfgslvnvkvnkgelsgealqnstktlgmkllqdlsspiyeinslklesnqlaldgtlitnlnlskedlrL 285
                  + v++l++p l++++++++ k +  +++ g++v++  +kg+++g++ ++++k++gm++l+++s+p++ + ++ ++++++a+ gt+ ++ln +  dlrL
  CTQ30460.1 185 TILVDPLGKP-LPFSEVTGT-KDRHSAAKPGDYVFGLSLKGRYKGQPVTGNGKIGGMLALRSASAPFPLQGDFHSGNTRVAFSGTVSDPLNVGGIDLRL 281
                 *********9.*********.****************************************************************************** PP

        AsmA 286 kasglksilaalslkadeldslanqaeltgvnlprtpqaitlqelslsaktensqvsivLknltlnldklsvngkkiviksdinganqlpkaqarpklr 384
                 k+ g               dsl++++ ltgv lp+tp ++t+++l ++++++n   +          +++++ng+  +++sdi+g++++++ ++rpkl+
  CTQ30460.1 282 KFAG---------------DSLRDLYDLTGVLLPETPSFSTDGRLRADFTQKNRMRF----------NYQNFNGR--IGDSDIHGSLTYTTGKPRPKLS 353
                 ****...............9******************************9999999..........********..********************** PP

        AsmA 385 gkLsspeLdldrlqpikaaiatkskaneqkasglsa.dkknkplkeerillgvwqeieadlsanidkvty.ssllisdlkaklrlegGvlqLsrlkagl 481
                 g+++s++L+l++l+p++++ + k  ++ +++   ++ +++ k+l+ +r+++++wq ++ad++++++++++   l+isdl+++  le+G+l+L+++++gl
  CTQ30460.1 354 GDMESKQLRLADLGPLIGVDSGKGTKKSASRQAGDRpQPAGKVLPADRFETDKWQVMDADVRFKGRRIEHgGTLPISDLSTHVILEDGDLRLQPVRFGL 452
                 *******************666655555555555542789******************************99*************************** PP

        AsmA 482 ygGeleakgqldlskksatvrlklnaknlplkrLladlskikkldGlldididltgsGnsvatlinnLnGqlklnlnnGals.......Glnlnqilva 573
                 ++G+++++ +l+++kk+ +  ++l+a++l+lk L+++++ ++k+ G++++d+ l+gsGnsva+l++n+nG+lkl++n+G++s       Gln++++l  
  CTQ30460.1 453 ANGSIAGSVHLQGDKKPLQGEANLQARRLKLKALMPNVEMMQKTLGEMNGDVQLRGSGNSVAALLGNSNGNLKLLMNDGLISrnlmeilGLNVGNYLI- 550
                 *************************************************************************************************9. PP

        AsmA 574 giaaltssfgtkstpfknlavslnlkkGvltlnd 607
                       ++fg+++++++++a+++  ++Gv++++ 
  CTQ30460.1 551 -----GQIFGDEEVRVNCAAANIDVTNGVARPQI 579
                 .....*************************9875 PP

>> AsmA_2  AsmA-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.012        70      24      95 ..     257     331 ..     251     332 .. 0.66
   2 !    5.5   0.0    0.0018        11       9      55 ..     316     361 ..     306     377 .. 0.74
   3 !   57.7   2.5     2e-19   1.2e-15       2     179 ..     430     607 ..     429     611 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.012
      AsmA_2  24 spggklsgsgswstkggaartnldlkldgvdlgallkrlg.lae.....vlgGkgslelnlswqgaplspdlssLsGd 95 
                 s++ ++++sg++s   +   ++l+lk++g++l +l++  g l +     + +G+++++++   q + +++++ + +G+
  CTQ30460.1 257 SGNTRVAFSGTVSDPLNVGGIDLRLKFAGDSLRDLYDLTGvLLPetpsfSTDGRLRADFT---QKNRMRFNYQNFNGR 331
                 677788888888887655679999999999999999888853333443222333333333...666677888888876 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0018
      AsmA_2   9 rlkde.glrldnlrlrspggklsgsgswstkggaartnldlkldgvdl 55 
                 + k+  + + +n+++r+++  + gs +++t++   r +l++++++++l
  CTQ30460.1 316 TQKNRmRFNYQNFNGRIGDSDIHGSLTYTTGKP--RPKLSGDMESKQL 361
                 44443578889*******************865..5566666665554 PP

  == domain 3  score: 57.7 bits;  conditional E-value: 2e-19
      AsmA_2   2 gnvsgklrlkdeglrldnlrlrspggklsgsgswstkggaartnldlkldgvdlgallkrlglaevlgGkgslelnlswqgaplspdlssLsGdlslel 100
                 +++s ++ l+d+ lrl+ +r+ + +g+++gs +++++++  + + +l+ +   l+al+ ++++++   G+++ +++l++ g++ +++l + +G+l+l +
  CTQ30460.1 430 SDLSTHVILEDGDLRLQPVRFGLANGSIAGSVHLQGDKKPLQGEANLQARRLKLKALMPNVEMMQKTLGEMNGDVQLRGSGNSVAALLGNSNGNLKLLM 528
                 578889999***************************99988********************************************************** PP

      AsmA_2 101 edgqilgvsll...rdlgllkltldfrdlfgeglafddikgtftienGvvttkdfklkgpaaavtvsGtvdldtetldlnvv 179
                 +dg i+  + l   ++l++    l  +   +e +  +   +++ + nGv++ + f +++ +a ++v+Gt+++++e+ldl++ 
  CTQ30460.1 529 NDGLISR-N-LmeiLGLNVG-NYLIGQIFGDEEVRVNCAAANIDVTNGVARPQIFAFDTENALINVTGTASFASEQLDLTID 607
                 ***9999.3.2223333332.3444455556689*********************************************986 PP

>> DUF748  Domain of Unknown Function (DUF748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0038        23       1      38 [.     159     196 ..     159     247 .. 0.74
   2 ?    0.5   0.0       0.1   6.1e+02      45      92 ..     244     294 ..     231     333 .. 0.58
   3 ?   -1.2   0.0      0.35   2.1e+03      59      91 ..     331     368 ..     301     372 .. 0.60
   4 ?    3.5   0.0     0.012        71       6      91 ..     405     488 ..     401     519 .. 0.73
   5 ?   -0.5   0.0      0.21   1.3e+03      25      57 ..     579     611 ..     560     646 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0038
      DUF748   1 wrvsidrlaltdgsvafaDrslsppfkltlselnltls 38 
                 w++++d++ ++ g++a +D+  +  +++ +++l+  l+
  CTQ30460.1 159 WSFRLDNILFDRGTIAIDDKITRSDITILVDPLGKPLP 196
                 99******************999999999999876554 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.1
      DUF748  45 eqpadvelsgavnkg.gplqisGtln.plp.laselelslkgldLaplspY 92 
                 ++ a++ l+g   +g  ++++sGt++ pl+    +l+l++ g +L++l + 
  CTQ30460.1 244 SASAPFPLQGDFHSGnTRVAFSGTVSdPLNvGGIDLRLKFAGDSLRDLYDL 294
                 445556666665555579999999987555244447777776666655443 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.35
      DUF748  59 g.gplqisGtlnplplase....lelslkgldLaplsp 91 
                 + g  +i+G+l+ +  + +    +++  k+l La+l p
  CTQ30460.1 331 RiGDSDIHGSLTYTTGKPRpklsGDMESKQLRLADLGP 368
                 24556677777755433333345777777777777766 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.012
      DUF748   6 drlaltdgsvafaDrslsppfkltlselnltlsnlsslp.eqpadvelsgavnkggplqisGtlnplplaselelslkgldLaplsp 91 
                 d+ ++ d+ v+f  r+++   +l +s+l+  +   + +   qp+++ l ++++ +g+++++G+    pl+ e +l++++l+L++l p
  CTQ30460.1 405 DKWQVMDADVRFKGRRIEHGGTLPISDLSTHVILEDGDLrLQPVRFGL-ANGSIAGSVHLQGDK--KPLQGEANLQARRLKLKALMP 488
                 566667777777777777777777777777776555444466666666.344444789999998..567777788888999998887 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.21
      DUF748  25 pfkltlselnltlsnlsslpeqpadvelsgavn 57 
                  f+++ ++  +++++ +s ++++ d++++++++
  CTQ30460.1 579 IFAFDTENALINVTGTASFASEQLDLTIDPESK 611
                 555555555566666666666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 5246.43
//
Query:       CTQ30461.1  [L=309]
Description: ketodeoxygluconokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-72  244.8   0.1    1.4e-72  244.6   0.1    1.0  1  PfkB      pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.6   0.1   7.8e-77   1.4e-72       2     300 ..       3     305 ..       2     307 .. 0.95

  Alignments for each domain:
  == domain 1  score: 244.6 bits;  conditional E-value: 7.8e-77
                 EEEEEEEEEEEEEEEECSSHTTSEEEESEEEEEEESHHHHHHHHHHHTT....-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEE CS
        PfkB   2 tkvvviGealidliavseklegelvevktveksaGGagaNvAvalarlg....advafigavGdDnfGeflleelkkegvdtdyvkidedtrtglaliv 96 
                 +k++viGe++i+l+++          ++ v++++GG+++N+ v++ar+      +v++++a+G+D f++++l+++++e+v+td +++ +d  +gl++i+
  CTQ30461.1   3 KKIAVIGECMIELSEK----------NGAVNRGFGGDTLNTSVYIARQTdasaLSVHYVTALGTDAFSQQMLDSWQQENVNTDLIQRMADRLPGLYYIE 91 
                 79*******9999988..........578************************9********************************************* PP

                 ETTTSEEEEEEEEGGGGGHHHHHHH...HHHHHHGCTSEEEEES....EECTTSHHHHHHHHHHHHHHTTE..EEEEECESSSHH...HHHHHHHHHCT CS
        PfkB  97 vdedgertivfnrgaaadltkeele...ededlleeadllyisg....llsselpeavleelaeaaknggt..fdpnlldplgaq...fkeallellal 183
                 +d +gert++++r++aa+  + e++     +++l+  d+ly+sg    +ls++++++++++l+e++ ngg+  fd+n++++l+a+   ++++++e+la+
  CTQ30461.1  92 TDDTGERTFYYWRNEAAAKFWLESDraaAICEELATFDYLYLSGislaILSPASRDKLFTLLRECRANGGKviFDNNYRPRLWASqaeTQQVYQEMLAC 190
                 **88******************99999999********************************************************************* PP

                 ESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE.TTEEEEEEE...SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHH CS
        PfkB 184 adllkpneeElealtgekledieealaalhklkakgaktvvvtlGkeGalvve.kdgelkvpav..pkvkvvDttGAGDsfvggflaallegksleeal 279
                 +d+++++ ++ +al+gek   ++e++a+ h+   +g++ vvv++G++ +lv+  ++   +vpav   k+kvvDtt+AGDsf +g+la  l+g + e a+
  CTQ30461.1 191 TDIAFLTLDDEDALWGEK--PVAEVIARTHA---AGVEEVVVKRGADACLVSVsGQPLREVPAVrlAKEKVVDTTAAGDSFSAGYLAVRLTGGDAESAA 284
                 ******************..*********99...9******************7444444555555********************************* PP

                 HHHHHHHHHHHTSSSSSTCSC CS
        PfkB 280 rfanavAalvvqkkgaiaslp 300
                 r+++ +A+ v+q++gai + +
  CTQ30461.1 285 RRGHLTASTVIQYRGAIIPRE 305
                 *****************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2500.37
//
Query:       CTQ30462.1  [L=500]
Description: putative zinc-dependent peptidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-20   71.9   0.0    2.3e-19   70.1   0.0    1.9  2  Peptidase_M16_C  Peptidase M16 inactive domain
    3.8e-07   30.2   0.0    6.1e-06   26.3   0.0    2.3  2  Peptidase_M16    Insulinase (Peptidase family M16)
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.25   11.4   0.0    1.5  1  DDR_swiveling    DD-reactivating factor swiveling domain
       0.15   12.3   0.2        1.8    8.7   0.3    2.3  2  Ku_PK_bind       Ku C terminal domain like


Domain annotation for each model (and alignments):
>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   5.1e-23   2.3e-19       2     182 ..     200     377 ..     199     378 .. 0.79
   2 ?   -2.5   0.0      0.97   4.4e+03     147     163 ..     412     428 ..     397     466 .. 0.63

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 5.1e-23
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHTT CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpskended 95 
                      +++ +lk+fy+k+Y+p+ m+l++vG+vd   + ++i+k+fgdlk +    ++ ++++l+  +l + pv +    + q +ls+++ +p + + +d
       CTQ30462.1 200 IDVAQLKDFYQKWYTPDAMTLIVVGNVDSRSVAEQINKTFGDLKGKR--ETPAAVPTLS--PLPTVPVSIMTNAVRQDKLSIMWDAPWQ-PIRD 288
                      7899****************************************864..4444444444..88888888888888**************.7777 PP

                      HHHHHHHHH.HHHSSTTSHHHHHHHTTTTS..ESEEEEEEEEES..SCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH CS
  Peptidase_M16_C  96 dlalavlnt.lLgggmesrLytnlrekegl..aysvsafndsyr..dsglfgisatadpenveevvevilkelrklkkeglteeeleraknq 182
                      ++al+   +  L  +    L+ +++++     ++++++++d         + i++++  e++++ + v+ +el+k++++gl++ee+++ ++q
       CTQ30462.1 289 SAALQRYWRdDLARE---ALFWHVQQSLSKnnVKDIGLGFDCRVlyQRAQCAINIDSPGERLNNNLSVVSRELAKVRDNGLPQEEFDALIAQ 377
                      777764432133333...45555553333344667777766444557799*************************************99887 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.97
                      EECTTHHHHHHHHHHHH CS
  Peptidase_M16_C 147 adpenveevvevilkel 163
                      + pe+++++ + +l+ l
       CTQ30462.1 412 IAPEQYQKLRQEFLNSL 428
                      44555555444444433 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.4e-09   6.1e-06       6     107 ..      50     158 ..      45     176 .. 0.90
   2 ?    1.2   0.1     0.075   3.4e+02      87     135 ..     429     479 ..     416     485 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.4e-09
                    E-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCH.HHHHHHHHHTTCEE...EEEEESSEEEEEEEEEGGG...HHHHHHHHHHH CS
  Peptidase_M16   6 sdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkyps.nklaeeleklGgsl...nAttsrentvYyvevlskd...lekaldvladv 94 
                     + p+++  v+l v+ GS++e  +++G + ++ ++a+  +   p  ++   + +++  +     A  s+++t++ ++++++    l++al  lad 
     CTQ30462.1  50 PQRPSDRIEVRLSVNIGSLSESTQQSGFSRFIPRLALTQSGSLPTmQARSLWQQSIDPKRplpPAIVSYDYTMFNLSLPNNRndlLKEALSWLADA 145
                    44589999*************************************888888888888888999*****************9999************ PP

                    HHSBTTSHHHHHH CS
  Peptidase_M16  95 fkaplleesever 107
                      + +++++ ++ 
     CTQ30462.1 146 SGKLAITPESINH 158
                    *999999998876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.075
                    HHHHHHHHHHSBTTSHHHH..HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH CS
  Peptidase_M16  87 aldvladvfkaplleesev..ererkvvekeveavdaepekvveenlhaaa 135
                     +d+l++ ++++l ++ ++  ++ +   e+ +++++a +ek++  n  a+a
     CTQ30462.1 429 TVDMLNQYLRQQLSQDMALvlQQPKGEPEYNMKELQATWEKLMAPNPAATA 479
                    589999999999777665411455669999999999999988888777766 PP

>> DDR_swiveling  DD-reactivating factor swiveling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.5e-05      0.25       3      60 ..     184     239 ..     182     245 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.5e-05
  DDR_swiveling   3 estmiGhnPstPgGlGlgvGetvkleelekakkeeevivvvpkevdfeeaaklineal 60 
                     stm+Gh+P++P    + v +  ++ +     + + + ++v  +vd +++a++in+++
     CTQ30462.1 184 GSTMLGHDPAAPLKQPIDVAQLKDFYQKWY--TPDAMTLIVVGNVDSRSVAEQINKTF 239
                    69***********99999987766655444..445566777799***********976 PP

>> Ku_PK_bind  Ku C terminal domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.12   5.3e+02      81     118 ..     202     239 ..     194     241 .. 0.83
   2 ?    8.7   0.3    0.0004       1.8       2      80 ..     367     453 ..     366     489 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.12
  Ku_PK_bind  81 ggdrrefWkelvkkeklglIskdeaessdvteeeAkeF 118
                  ++ ++f+++  + + ++lI + +++s +v e+  k F
  CTQ30462.1 202 VAQLKDFYQKWYTPDAMTLIVVGNVDSRSVAEQINKTF 239
                 467899**999999*************99999877776 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0004
  Ku_PK_bind   2 PvedFkkllaqkde..edlvekavkqlksvIeqlvedslgdssydkaveclkalReeaieeeepelyNdFlr.....dlkkklqs.e 80 
                 P e+F++l+aqk+   ++l+ + ++  +++  +  ++sl+++ +d a e  + lR+e ++  ++++ N++lr     d+   lq+ +
  CTQ30462.1 367 PQEEFDALIAQKSLelQKLFATYARTDTDILMSQRMRSLQNQVVDIAPEQYQKLRQEFLNSLTVDMLNQYLRqqlsqDMALVLQQpK 453
                 7789******999877788888888888899999999**********************************9766666666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 4041.35
//
Query:       CTQ30463.1  [L=73]
Description: hypothetical protein CH1034_350159 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       256  (0.0142785); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 538.29
//
Query:       CTQ30464.1  [L=428]
Description: C4-dicarboxylic acid, orotate and citrate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.5e-112  374.4  40.2   7.4e-112  374.2  40.2    1.0  1  SDF       Sodium:dicarboxylate symporter family


Domain annotation for each model (and alignments):
>> SDF  Sodium:dicarboxylate symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.2  40.2  4.1e-116  7.4e-112       1     390 []       9     401 ..       9     401 .. 0.97

  Alignments for each domain:
  == domain 1  score: 374.2 bits;  conditional E-value: 4.1e-116
         SDF   1 LllqiliglvlGlviGllelvkelaalisplgdlfinllkmlivPlvfasiisgiaslgdakklgklglktllyfllttliAaiiglilalllkpg... 96 
                 L++q+l ++++G+++G+  + +el+a+++p+gd+f++l+km+i+P++f+++++gia+++++k++g+ g  +llyf ++++iA+iigli++++++pg   
  CTQ30464.1   9 LYVQVLTAIAIGILLGH--FYPELGAQMKPFGDAFVKLIKMVIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEVVSTIALIIGLIIVNVVQPGagm 105
                 689*************9..*****************************************************************************999 PP

         SDF  97 ....selaleassakeaekketdslldlilslipsnifealaegnvlavivfailfGialaalgekgepllkffeslnevvmkvvkivmklaPigvfal 191
                     s+l ++a  a  ae+++ + +  ++l++ip  ++ a+a+gn+l+v++fa+lfG+al +lg kg+ +++++es+++v++ +++++m+laPig f++
  CTQ30464.1 106 nvdpSTLDAKA-VAVYAEQAKDQGVVAFLLDVIPGSVIGAFASGNILQVLLFAVLFGFALHRLGSKGQLIFNVIESFSQVIFGIINMIMRLAPIGAFGA 203
                 99855444444.444555557789*************************************************************************** PP

         SDF 192 iaslvaskglgalsslakflltvylglaihllivlpllllvltkknplkflkkilpalltAfsTaSSaAtLPvtlecaeknlgvsesiasfvlPlGati 290
                 +a +++++g+g+l++l+++++++y+++++++++vl  +++ +t+++++kf+++i++ ll+ ++T+SS+ +LP +l+++ek lg+++s++++v+P+G+++
  CTQ30464.1 204 MAFTIGKYGVGTLVQLGQLIICFYITCILFVVVVLGSIAR-ATGFSIFKFIRYIREELLIVLGTSSSESALPRMLDKMEK-LGCRKSVVGLVIPTGYSF 300
                 **************************************99.999************************************.9***************** PP

         SDF 291 nmdGtalyeavaaifiaqlfgvelslgqllllvlvatlasiGaagvPgaglvalllvlsalg.lpvegialilaidrllDmfrTavNvtGdavaaliva 388
                 n+dGt++y+++aa+fiaq+++ ++++ ++++l++v++l+s Gaagv g+g+++l++++sa+g lpv+g+alil+idr++  +r+++N +G+ va+++va
  CTQ30464.1 301 NLDGTSIYLTMAAVFIAQATNSHMDIFHQITLLVVLLLSSKGAAGVTGSGFIVLAATISAVGhLPVAGLALILGIDRFMSEARALTNLVGNGVATVVVA 399
                 **************************************************************9************************************ PP

         SDF 389 kl 390
                 k+
  CTQ30464.1 400 KW 401
                 97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3041.36
//
Query:       CTQ30465.1  [L=668]
Description: putative diguanylate cyclase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-55  188.6   0.1    2.2e-55  187.8   0.1    1.4  1  EAL       EAL domain
    5.7e-51  171.6   1.3    3.8e-50  168.9   1.9    2.0  2  GAPES3    Gammaproteobacterial periplasmic sensor domain
    1.3e-08   35.1   0.5    3.6e-08   33.6   0.5    1.8  1  HAMP      HAMP domain
    2.7e-08   33.7   0.0    1.6e-07   31.2   0.0    2.3  3  GGDEF     Diguanylate cyclase, GGDEF domain
  ------ inclusion threshold ------
      0.015   15.5   0.6        0.1   12.9   0.2    2.6  3  CHASE8    Periplasmic sensor domain


Domain annotation for each model (and alignments):
>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.8   0.1   6.1e-59   2.2e-55       3     236 ..     415     646 ..     413     648 .. 0.94

  Alignments for each domain:
  == domain 1  score: 187.8 bits;  conditional E-value: 6.1e-59
                 HHHHHCCTT-EEEEEEEEEESSS-SSEEEEEEEEEEECTTCEE-CCCCHHHHHHCTCHHHHHHHHHHHHHHHHHHHH.CHTT--EEEEEE--CHHCC-C CS
         EAL   3 alrealenkelalyyQPvvdlktgkvvgleallrwqhpdgglispeeflplaerlgllaeldrwvleqalqdlrrla.eqldadiklsinlspaslade 100
                 ++ +al+n+++a+++QP+v +++g++ g+e+llr + +dg    p ++++ +e++gl+  +  wv+e+a+++l++++ +     ++ls+n+s  +l ++
  CTQ30465.1 415 DIMTALDNQQFAIWLQPQVACASGEICGAEVLLRQRQADGSWSLPPALIERIESCGLIIPVGYWVMEEACRQLAAWQsQ--GIMLPLSVNVSLLQLLEH 511
                 56789************************************889********************************977..667888******999999 PP

                 CHHHHHHHHHHCCT-GCC-EEEEEEHHHHHHTHHHHH.HHHHHHHCTT-EEEEEEETSSTCCCHH...HCCC--SEEEE-HHHHTTTTTSCHHHHHHHH CS
         EAL 101 efleelrellkqsgpspsrLvleitesellarlealqeevlarLralGirialddfgtgysslsy...larlppdiiKldrslladleedeeaqalvka 196
                 +  ee+++l+++++++p  L+le+tes  +++ +++  + l+ Lr++G++ialddfg gy+ l++   ++ lp+di+K+d+ +++ l+   e+ ++v a
  CTQ30465.1 512 DRGEEMLKLIARYRIAPGTLILEVTESCRMDDPQDVM-ARLRPLREAGVQIALDDFGMGYAGLHQlqqMKALPVDILKIDKVFIDMLP---EDVSMVPA 606
                 9999999999999999999********9999999999.9999*******************99872225689************8875...******** PP

                 CHHHHCCCT-EEEE-S--SHHHHHHHHHHT-SEE-STTT- CS
         EAL 197 lialakelgikvvaegVeteeqlealrelgcdlvQGylls 236
                 +i+la+ l +++vaegVe+++q ++l+++g++ +QG+l++
  CTQ30465.1 607 MIQLARGLSLRIVAEGVENDAQRRWLQAAGVEVLQGHLFG 646
                 **************************************96 PP

>> GAPES3  Gammaproteobacterial periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9   1.9   1.1e-53   3.8e-50       1     121 []      36     155 ..      36     155 .. 0.99
   2 ?   -2.1   0.0      0.97   3.5e+03      69      92 ..     485     508 ..     481     520 .. 0.79

  Alignments for each domain:
  == domain 1  score: 168.9 bits;  conditional E-value: 1.1e-53
      GAPES3   1 qqrredyakqleniavsvrqpLsdalLkadleeakeilislkasgilsradvvlPedvqvlrldfaterpvpelakrvfelPveisvPLyslerasaep 99 
                 qq r ++a+qle+ia+svr+pLs+a+Lkad++ea++il  ++++gi+sradvvlP+++q+lr++f +erpvp +++r+felPv+is+P+ysler +a+p
  CTQ30465.1  36 QQSRFTTATQLESIARSVREPLSAAILKADIPEAEAILSRIQPAGIVSRADVVLPNQFQALRMRFIPERPVPVTVTRLFELPVQISLPIYSLER-PANP 133
                 79999*****************************************************************************************.**** PP

      GAPES3 100 kplayLvLqaDsyRlYrfilst 121
                 +playLvLqaDsyR+Y+f++s+
  CTQ30465.1 134 QPLAYLVLQADSYRMYKFVMSA 155
                 *******************985 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.97
      GAPES3  69 rpvpelakrvfelPveisvPLysl 92 
                 r ++++ ++   lP+ ++v L +l
  CTQ30465.1 485 RQLAAWQSQGIMLPLSVNVSLLQL 508
                 6778899999999**999998765 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.5     1e-11   3.6e-08       2      52 ..     178     232 ..     177     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1e-11
                 HHHTTHHHHHHHHHHHHHHTTT.BTSST..CCT.TSSSHHHHHHHHHHHHHHHHH CS
        HAMP   2 larrilrPLrrLaraarriaaG.dldtr..lpv.sgrDEiGeLarafNaMldrLr 52 
                 + r ++rPLrr+ar  + +++  +l ++  lp  + +DEiG+L+r++N+ +++L+
  CTQ30465.1 178 INRLMVRPLRRIARELNDLSQQeRLGHQltLPRlHHDDEIGMLVRSYNRNQQSLV 232
                 789*****************74466666664444777***************997 PP

>> GGDEF  Diguanylate cyclase, GGDEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.52   1.9e+03      76     108 ..     208     241 ..     186     249 .. 0.59
   2 !   31.2   0.0   4.6e-11   1.6e-07       6     161 .]     247     394 ..     243     394 .. 0.93
   3 ?   -2.1   0.0       0.8   2.9e+03       3      14 ..     414     425 ..     408     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.52
                 EEEE.SSSEEEEEEECSSHHHHHHHHHHHHHHHH CS
       GGDEF  76 vaRl.ggdeFaillpetsseeaaelaerirrlla 108
                 + Rl ++de+ +l+ + ++++++ + +  +  ++
  CTQ30465.1 208 LPRLhHDDEIGMLVRSYNRNQQSLVRQHDELSIQ 241
                 4455257899999999998866555555444444 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 4.6e-11
                 CCGSEEHHHHHHHHHHHHHCCHHCTSEEEEEEEEETTHHHHHHHH-HHHHHHHHHHHHHHHHCCS-TTSEEEEESSSEEEEEEECSSHHHHHHHHHHHH CS
       GGDEF   6 lTgLpNRrlleeeleqelqrarreqkslavllldldnFkkindtyGhsvGDevLqevakrLssslrksdlvaRlggdeFaillpetsseeaaelaerir 104
                 + +LpN+++l   leq ++r     +s a++++  + +++    + +s+ + +L ++ ++L+ ++ ++ ++a+++g +Fail     +    ++  + +
  CTQ30465.1 247 VSELPNKAFLLAMLEQTVARP----QSAALIVVACETLQDAAGVLKESQREMLLLTLVEKLRAAIPPQMVLAQVSGYDFAILADGLAEP--WQAVMLSK 339
                 679**************9998....46889999999999888888899***************************************76..88888999 PP

                 HHHHCS-EEETTCCEEE---EEEEEEEE..-TTS-HHHHHHHHHHHHHHHHHCTSSC CS
       GGDEF 105 rllaklkepvelsgeelyvtisiGialappeegedleellkeAdealyeaKkagrnr 161
                 + l+ ++e + l g +l   +s+Gia+++   g ++e+ +++A +a   a+++g+n+
  CTQ30465.1 340 QVLTIINERLPLHGLQLRPYASVGIAMFH--AGLSAEQFYRRAVSAAVTARRKGKNQ 394
                 99999999999*****************6..************************96 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.8
                 B-CCCGSEEHHH CS
       GGDEF   3 hDslTgLpNRrl 14 
                 hD +T L N+++
  CTQ30465.1 414 HDIMTALDNQQF 425
                 899999999876 PP

>> CHASE8  Periplasmic sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   2.8e-05       0.1       4      54 ..      41      91 ..      38      95 .. 0.92
   2 ?   -3.1   0.0       2.6   9.5e+03      76      99 ..     197     220 ..     185     221 .. 0.62
   3 ?   -2.5   0.0       1.7   6.1e+03      50      65 ..     479     494 ..     477     510 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.8e-05
      CHASE8  4 yaqqnlellarilaenveAAlvFeDaaaAreiLaaLkaepeiaaaavydae 54
                ++  +le++ar++ e ++AA++  D  +A+ iL+ ++  + +++a v+  +
  CTQ30465.1 41 TTATQLESIARSVREPLSAAILKADIPEAEAILSRIQPAGIVSRADVVLPN 91
                567899****************************************99776 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.6
      CHASE8  76 laslllpepvespilhdgeriGtv 99 
                  ++ +l  + + p lh+ ++iG +
  CTQ30465.1 197 SQQERLGHQLTLPRLHHDDEIGML 220
                 344444444555889999999987 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.7
      CHASE8  50 vydaegkllaeyares 65 
                 v+++  ++la++++++
  CTQ30465.1 479 VMEEACRQLAAWQSQG 494
                 78888899****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1021  (0.0569468); expected 358.6 (0.02)
Passed bias filter:                      702  (0.0391544); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4530.02
//
Query:       CTQ30466.1  [L=1159]
Description: cellulose synthase subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.3e-120  400.6  14.7   8.8e-120  399.9  14.7    1.4  1  BCSC_C          Cellulose synthase operon protein C C-terminu
    2.4e-26   92.1  80.3    9.1e-09   35.8   2.5   10.2 10  TPR_16          Tetratricopeptide repeat
    1.4e-25   89.6  62.4      5e-07   30.1   2.5   10.3 11  TPR_19          Tetratricopeptide repeat
      1e-15   56.5  39.3      0.014   15.5   0.0   12.3 13  TPR_2           Tetratricopeptide repeat
    1.5e-14   53.4  64.9     0.0027   18.4   0.6   12.9 13  TPR_14          Tetratricopeptide repeat
    3.6e-12   45.8  31.3     0.0035   17.0   0.2    9.6 10  TPR_11          TPR repeat
    7.9e-12   45.3  24.1     0.0026   18.0   0.5    7.5  7  TPR_20          Tetratricopeptide repeat
    5.1e-11   41.9  15.2      0.015   15.4   0.0    9.0  9  TPR_8           Tetratricopeptide repeat
    7.6e-11   41.4  17.6      0.092   12.6   0.0    8.9  9  TPR_1           Tetratricopeptide repeat
      1e-10   41.7  46.1    0.00055   20.2   0.1    8.7  9  TPR_12          Tetratricopeptide repeat
    8.7e-09   35.4  47.8      0.049   13.8   0.6    9.1  9  TPR_9           Tetratricopeptide repeat
    1.6e-06   27.7  31.4      0.048   13.7   0.0   10.1 10  TPR_7           Tetratricopeptide repeat
    0.00072   19.7   6.1          8    6.8   0.0    6.1  7  ANAPC3          Anaphase-promoting complex, cyclosome, subuni
     0.0011   18.3   5.6     0.0011   18.3   5.6    7.8  8  TPR_15          Tetratricopeptide repeat
     0.0024   18.4  55.9        2.3    9.1   0.1   13.0 12  TPR_6           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.031   14.6  21.3       0.21   12.0   0.1    7.6  8  TPR_17          Tetratricopeptide repeat
       0.14   12.7   0.0        0.6   10.6   0.0    2.1  1  KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension


Domain annotation for each model (and alignments):
>> BCSC_C  Cellulose synthase operon protein C C-terminus (BCSC_C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  399.9  14.7  8.3e-123  8.8e-120       1     337 [.     803    1138 ..     803    1140 .. 0.97

  Alignments for each domain:
  == domain 1  score: 399.9 bits;  conditional E-value: 8.3e-123
      BCSC_C    1 sklteaeapleasvpvkdgrlsvrvtpvsldaGt..laasgsanarfGtgalsqaesvaaaagsqkasGvelalglegdswkadiGtTPlGfdvsnv 95  
                  s+l++++++l++++p++dgr+++r++ v++daG+  ++++gs+++ +Gt+   +++s    +++q++sG+++a+g+++d+w+ diGtTP+Gf+v +v
  CTQ30466.1  803 SDLKAHTTMLQVDAPLADGRMFFRTDLVNMDAGSfsTHSDGSYSPSWGTCGEIACTSG---SKNQTDSGASVAVGWKNDTWSGDIGTTPMGFNVVDV 896 
                  789*******************************9999*************9999884...789********************************* PP

      BCSC_C   96 vGgvkwspklgdlgltltaeRravtdSlLSYaGarDpvt..GkkWGgVtknggslslsyddgda.gvyaelgaesltGenVasNtsveanaGvylrl 189 
                  vGg+++s+++g++g+t++++Rr++++SlLS+ G++D+ +  G++WGgV+++gg+lslsyd+g+a g++++lga+sltG+nVa+N++v++++G+y+++
  CTQ30466.1  897 VGGLSYSSDVGPVGYTVNVHRRPISSSLLSFGGQKDSSShtGATWGGVRADGGGLSLSYDRGEAhGIWSSLGADSLTGKNVADNWRVRWMTGYYYKV 993 
                  ************************************96555******************************************************** PP

      BCSC_C  190 ikeddrelkvGlnlsymdydknlsyftyGqGGYfSPqrYvsvslpveytqrydnwsyklsgsvgyqsykedksayfPtdpdlqaalevaagtakeav 286 
                  i+e++r+++vGln ++++ydk+ls +t+GqGGY+SPq+Y+s+++pv+++qr++nws++l+gsv++++++++++a++P  + + +     ++ a+e +
  CTQ30466.1  994 INENNRRVTVGLNNMIWHYDKDLSGYTLGQGGYYSPQEYLSFAVPVTWRQRTENWSWELGGSVSWSHSRTQTQARYPLLNLIPSD---YRQRASELT 1087
                  *****************************************************************************65555544...788899*** PP

      BCSC_C  287 yagssksGigyslraaaeyrlnkqlvvGgqlsidtagdYaessallylrYl 337 
                  ++gss++G+gy++ra +e+r++++++vG++++i++a+dY++s+ally+rY+
  CTQ30466.1 1088 EEGSSSHGFGYTARALVERRVTSNWFVGAAVDIQQAKDYTPSHALLYVRYS 1138
                  **************************************************7 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.2   1.1e-05     0.012       2      37 ..      68     103 ..      67     105 .. 0.90
   2 !   11.0   0.1    0.0005      0.53       1      36 [.     117     149 ..     117     181 .. 0.85
   3 ?    0.3   0.0       1.1   1.2e+03      17      40 ..     236     259 ..     233     259 .. 0.89
   4 !   35.8   2.5   8.6e-12   9.1e-09       3      68 .]     276     338 ..     274     338 .. 0.96
   5 !   23.7  10.4   5.2e-08   5.4e-05       2      66 ..     357     418 ..     356     420 .. 0.93
   6 !    8.6   0.7    0.0028         3       2      32 ..     467     494 ..     466     496 .. 0.89
   7 ?    6.0   3.5     0.018        19       1      65 [.     500     561 ..     500     564 .. 0.92
   8 ?   -0.0   0.1       1.4   1.5e+03       1      27 [.     578     600 ..     578     607 .. 0.77
   9 !   28.7   5.1   1.5e-09   1.6e-06       2      57 ..     609     661 ..     608     667 .. 0.92
  10 ?    1.0   1.2      0.68   7.1e+02       4      60 ..     679     738 ..     677     749 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.1e-05
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAl 37 
                 a+ r++lr+gd + A++ le+++k++p+sP+  +++
  CTQ30466.1  68 ARMRYLLRQGDAAGAQKELERLTKLAPDSPELKASR 103
                 6789*************************9987776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0005
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeA 36 
                 l++ar++  ag+ d+A+aa+e +       Pd+++ 
  CTQ30466.1 117 LQQARLLGVAGKVDEAIAAYEKLYGGV---PDDVDV 149
                 689*******************99999...776664 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1.1
      TPR_16  17 aaaleaalkrdpssPdaaeAllll 40 
                 + al+++l ++p  ++aa A+ ll
  CTQ30466.1 236 VQALQQFLLQFPTGSVAANARVLL 259
                 6799***************99876 PP

  == domain 4  score: 35.8 bits;  conditional E-value: 8.6e-12
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 +++aa+++g+ ++A+a l+ a+ +d   +++ +A  +lg+a+ ++g+ a+A+a++ +a++ +pd+p
  CTQ30466.1 276 EGLAAVKSGNTTQAVADLQKAVQAD---SRDSDAVGALGQAYSQRGDRARAVAQLSKAIAMDPDSP 338
                 699**********************...88888*******************************98 PP

  == domain 5  score: 23.7 bits;  conditional E-value: 5.2e-08
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 ++++ al+ag+  +A++++ +a + d     +  A l+lgd+a+++++ a+A+ +y+ alr + +
  CTQ30466.1 357 KQGDNALKAGQLSQAQNYYAQAQRVD---RTDSYAVLGLGDVAAARKEAAAAERYYQQALRLDRG 418
                 79************************...66778**************************98765 PP

  == domain 6  score: 8.6 bits;  conditional E-value: 0.0028
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPd 32 
                 ++a+a+  +g++++Aa++ ++ l++d   Pd
  CTQ30466.1 467 KQAQALESQGNWAQAAEVQRRRLALD---PD 494
                 6899*******************999...65 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.018
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 + lar+++ ag+ ++A a+ ++ + r+   P++ae  +++g+ +  +   ++A+a+++a+ r a+
  CTQ30466.1 500 YRLARDLVSAGERQEADALMRTMVNRQ---PQDAERVYASGLYLSGNDQDDLALAQIAALPRSAW 561
                 789************************...***********************999998876665 PP

  == domain 8  score: -0.0 bits;  conditional E-value: 1.4
      TPR_16   1 lalaraalragdyddAaaaleaalkrd 27 
                 l +a+ ++++gd ++A+a+    +kr+
  CTQ30466.1 578 LRQANQLRDSGDEAQAIAL----IKRQ 600
                 5789999999999999955....4555 PP

  == domain 9  score: 28.7 bits;  conditional E-value: 1.5e-09
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaaly 57 
                  la+ a ++gd + A+a ++++l++     d+ +A+l+l++++l+ g+ ++A+a++
  CTQ30466.1 609 TLADWAQQRGDSQTAIADYQRVLRQE---ADNGDARLGLAEVYLAEGDKPAARAQV 661
                 6788899*******************...************************654 PP

  == domain 10  score: 1.0 bits;  conditional E-value: 0.68
      TPR_16   4 araalragdyddAaaaleaalkrdpssPd...aaeAllllgdaalrqgrlaeAaalyraa 60 
                 a+a++ +gd +dA++ +++ + +++  P     a  l   ++ a + g  + A+  yr+a
  CTQ30466.1 679 ALARAGLGDTADAQRIFNQIVPQAKAQPPsmeSALVLRDAARFATQSGAPQQALTHYREA 738
                 778889999999999998887666555544557777777777777778888888777776 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   1.1   1.3e-06    0.0014      19      63 ..      57     101 ..      32     104 .. 0.83
   2 ?    5.7   0.0      0.02        22       4      30 ..     126     152 ..     125     160 .. 0.90
   3 ?   -1.5   0.4       3.7   3.9e+03      44      61 ..     255     271 ..     252     274 .. 0.82
   4 !   28.9   0.7   1.2e-09   1.2e-06       2      59 ..     281     338 ..     280     347 .. 0.95
   5 !   11.1   3.9   0.00042      0.44       1      45 [.     362     406 ..     362     407 .. 0.96
   6 !    9.1   3.9    0.0018       1.9       3      55 ..     398     449 ..     396     455 .. 0.82
   7 !   20.2   0.7     6e-07   0.00063       4      61 ..     475     533 ..     472     536 .. 0.94
   8 ?   -1.5   0.3       3.6   3.8e+03      36      51 ..     585     600 ..     546     607 .. 0.63
   9 !   30.1   2.5   4.7e-10     5e-07       3      51 ..     616     664 ..     614     676 .. 0.91
  10 ?    3.6   0.3     0.091        96       5      45 ..     686     732 ..     680     739 .. 0.69
  11 ?   -0.2   0.0       1.4   1.5e+03       3      18 ..     724     739 ..     722     749 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.3e-06
      TPR_19  19 qedpknaearllLAeallalgqldeAealLdalpeedpddaryas 63 
                   dp+n+e+ ++ ++ ll +g+ + A++ L++l + +pd++++++
  CTQ30466.1  57 LIDPNNPELIAARMRYLLRQGDAAGAQKELERLTKLAPDSPELKA 101
                 34*************************************999875 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.02
      TPR_19   4 egdyaeAlalleqalqedpknaearll 30 
                 +g+ +eA+a++e+++   p++ ++++ 
  CTQ30466.1 126 AGKVDEAIAAYEKLYGGVPDDVDVAIE 152
                 6999*****************999875 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.7
      TPR_19  44 AealLdalpeedpddary 61 
                 A+ lLd+ +++ +d +  
  CTQ30466.1 255 ARVLLDQQQAQLQD-PTF 271
                 9999***9999999.665 PP

  == domain 4  score: 28.9 bits;  conditional E-value: 1.2e-09
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdda 59 
                 +++g+ ++A+a l++a q+d  +++a  +L +a+ + g+ + A a L+++ ++dpd++
  CTQ30466.1 281 VKSGNTTQAVADLQKAVQADSRDSDAVGALGQAYSQRGDRARAVAQLSKAIAMDPDSP 338
                 689*****************************************************85 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 0.00042
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 +l++g++ +A+++++qa   d  +++a l+L ++  a ++ ++Ae
  CTQ30466.1 362 ALKAGQLSQAQNYYAQAQRVDRTDSYAVLGLGDVAAARKEAAAAE 406
                 699************************************999998 PP

  == domain 6  score: 9.1 bits;  conditional E-value: 0.0018
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeed 55 
                 a++  a+A ++++qal  d +n  a  +LA+++ a   +++A a ++ lp+++
  CTQ30466.1 398 ARKEAAAAERYYQQALRLDRGNNLAVRGLANLYRA-ESPEKASAWIAGLPPAQ 449
                 77889****************9999999***9965.56777777777777666 PP

  == domain 7  score: 20.2 bits;  conditional E-value: 6e-07
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.ary 61 
                 +g+ a+A++  ++ l+ dp++ ++ ++LA+ l+++g+ +eA al+ +  + +p+d +r+
  CTQ30466.1 475 QGNWAQAAEVQRRRLALDPDSVWITYRLARDLVSAGERQEADALMRTMVNRQPQDaERV 533
                 99****************************************************96665 PP

  == domain 8  score: -1.5 bits;  conditional E-value: 3.6
      TPR_19  36 lalgqldeAealLdal 51 
                   +g+ ++A+al+++ 
  CTQ30466.1 585 RDSGDEAQAIALIKRQ 600
                 3445555555555554 PP

  == domain 9  score: 30.1 bits;  conditional E-value: 4.7e-10
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdal 51 
                 ++gd + A+a ++++l ++++n++arl+LAe++la g+  +A+a + +l
  CTQ30466.1 616 QRGDSQTAIADYQRVLRQEADNGDARLGLAEVYLAEGDKPAARAQVMQL 664
                 78****************************************9976665 PP

  == domain 10  score: 3.6 bits;  conditional E-value: 0.091
      TPR_19   5 gdyaeAlalleqal.qedpk.....naearllLAeallalgqldeAe 45 
                 gd a+A++++ q+  q++++     +a ++ + A+   ++g +++A 
  CTQ30466.1 686 GDTADAQRIFNQIVpQAKAQppsmeSALVLRDAARFATQSGAPQQAL 732
                 78888888888864344333555546666667788888888888875 PP

  == domain 11  score: -0.2 bits;  conditional E-value: 1.4
      TPR_19   3 aegdyaeAlalleqal 18 
                 ++g +++Al ++++a+
  CTQ30466.1 724 QSGAPQQALTHYREAM 739
                 7899*********985 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.1     0.011        12      10      33 ..      72      95 ..      71      96 .. 0.93
   2 ?    4.9   0.3     0.032        33       8      27 ..     120     139 ..     117     140 .. 0.82
   3 !    7.1   0.0    0.0063       6.7       7      32 ..     276     301 ..     274     303 .. 0.90
   4 !   15.5   0.0   1.3e-05     0.014       6      33 ..     309     336 ..     305     337 .. 0.94
   5 !    9.1   0.2    0.0014       1.5       4      33 ..     355     384 ..     353     385 .. 0.90
   6 !   11.8   2.1    0.0002      0.21       6      34 .]     391     419 ..     387     419 .. 0.92
   7 !    8.6   0.1     0.002       2.2       6      33 ..     467     494 ..     463     495 .. 0.91
   8 ?    0.8   0.0      0.65   6.9e+02       5      33 ..     500     528 ..     498     529 .. 0.88
   9 ?   -1.9   0.1       4.7     5e+03       6      25 ..     579     598 ..     578     599 .. 0.84
  10 ?    6.0   0.0     0.014        15       7      31 ..     610     634 ..     608     637 .. 0.88
  11 ?   -0.4   0.1       1.6   1.6e+03       6      22 ..     643     659 ..     639     661 .. 0.86
  12 ?   -1.5   0.0       3.6   3.8e+03       7      26 ..     678     697 ..     676     699 .. 0.83
  13 ?    3.0   0.1      0.13   1.4e+02       4      27 ..     715     738 ..     712     741 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.011
       TPR_2 10 ayyklgdyeeAleafekAleldPn 33
                 ++++gd + A + +e+  +l+P+
  CTQ30466.1 72 YLLRQGDAAGAQKELERLTKLAPD 95
                589********************8 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.032
       TPR_2   8 GlayyklgdyeeAleafekA 27 
                 ++++  +g+ +eA++a+ek 
  CTQ30466.1 120 ARLLGVAGKVDEAIAAYEKL 139
                 56666789**********96 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0063
       TPR_2   7 lGlayyklgdyeeAleafekAleldP 32 
                  Gla+ k+g+  +A+++++kA++ d 
  CTQ30466.1 276 EGLAAVKSGNTTQAVADLQKAVQADS 301
                 59999*****************9875 PP

  == domain 4  score: 15.5 bits;  conditional E-value: 1.3e-05
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPn 33 
                 +lG+ay ++gd ++A++ + kA++ dP+
  CTQ30466.1 309 ALGQAYSQRGDRARAVAQLSKAIAMDPD 336
                 69*************************8 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.0014
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 l  +G+ ++k+g++ +A +++ +A + d +
  CTQ30466.1 355 LIKQGDNALKAGQLSQAQNYYAQAQRVDRT 384
                 6789********************998876 PP

  == domain 6  score: 11.8 bits;  conditional E-value: 0.0002
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                  lG++++++++ + A++++++Al+ld +n
  CTQ30466.1 391 GLGDVAAARKEAAAAERYYQQALRLDRGN 419
                 69***********************9876 PP

  == domain 7  score: 8.6 bits;  conditional E-value: 0.002
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPn 33 
                  +++a++ +g++++A+e  ++ l+ldP+
  CTQ30466.1 467 KQAQALESQGNWAQAAEVQRRRLALDPD 494
                 689*****************99999998 PP

  == domain 8  score: 0.8 bits;  conditional E-value: 0.65
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                 y+l++ +  +g+ +eA ++++  +   P+
  CTQ30466.1 500 YRLARDLVSAGERQEADALMRTMVNRQPQ 528
                 89**************9999988887776 PP

  == domain 9  score: -1.9 bits;  conditional E-value: 4.7
       TPR_2   6 nlGlayyklgdyeeAleafe 25 
                 ++++ ++ +gd ++A+++ +
  CTQ30466.1 579 RQANQLRDSGDEAQAIALIK 598
                 67899999*******99865 PP

  == domain 10  score: 6.0 bits;  conditional E-value: 0.014
       TPR_2   7 lGlayyklgdyeeAleafekAleld 31 
                 l++ + ++gd + A+++++++l+ +
  CTQ30466.1 610 LADWAQQRGDSQTAIADYQRVLRQE 634
                 899999****************976 PP

  == domain 11  score: -0.4 bits;  conditional E-value: 1.6
       TPR_2   6 nlGlayyklgdyeeAle 22 
                  l+++y++ gd   A++
  CTQ30466.1 643 GLAEVYLAEGDKPAARA 659
                 699********999986 PP

  == domain 12  score: -1.5 bits;  conditional E-value: 3.6
       TPR_2   7 lGlayyklgdyeeAleafek 26 
                  +la + lgd ++A + f++
  CTQ30466.1 678 VALARAGLGDTADAQRIFNQ 697
                 57888999******999987 PP

  == domain 13  score: 3.0 bits;  conditional E-value: 0.13
       TPR_2   4 lynlGlayyklgdyeeAleafekA 27 
                 l   ++ + ++g +++Al ++++A
  CTQ30466.1 715 LRDAARFATQSGAPQQALTHYREA 738
                 56667777889999*********9 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.6   2.6e-06    0.0027       1      37 [.      63      99 ..      63     102 .. 0.94
   2 ?    5.2   0.3     0.046        48       5      40 ..     117     152 ..     114     160 .. 0.79
   3 ?   -2.0   0.0       9.2   9.7e+03       6      27 ..     187     208 ..     182     212 .. 0.83
   4 ?    5.5   0.1     0.035        37      10      43 ..     279     312 ..     272     312 .. 0.89
   5 !   15.6   0.2     2e-05     0.021       4      35 ..     307     338 ..     304     340 .. 0.92
   6 ?    2.7   0.1      0.28     3e+02      11      42 ..     362     393 ..     353     395 .. 0.82
   7 !    8.8   3.4    0.0032       3.3       4      42 ..     389     427 ..     386     429 .. 0.88
   8 !   16.8   1.3     8e-06    0.0084       7      43 ..     468     504 ..     464     506 .. 0.95
   9 ?    5.6   0.3     0.032        34       2      36 ..     497     531 ..     496     556 .. 0.92
  10 ?    1.7   0.1      0.58   6.2e+02       5      27 ..     578     600 ..     575     607 .. 0.87
  11 !   11.7   1.3   0.00036      0.38       5      43 ..     608     646 ..     604     647 .. 0.90
  12 ?    2.1   0.0      0.45   4.7e+02       5      33 ..     676     704 ..     672     708 .. 0.78
  13 ?    6.6   0.1     0.016        17       4      27 ..     715     738 ..     712     758 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.6e-06
      TPR_14  1 peallalaeallalGdpdeAiallrralalaPddaea 37
                pe+ +a+ ++ll++Gd ++A + l+r+ +laPd++e+
  CTQ30466.1 63 PELIAARMRYLLRQGDAAGAQKELERLTKLAPDSPEL 99
                68899*****************************997 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.046
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawll 40 
                 l+ a++l  +G+ deAia+++++    Pdd ++ ++
  CTQ30466.1 117 LQQARLLGVAGKVDEAIAAYEKLYGGVPDDVDVAIE 152
                 5677777789************98888888766554 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 9.2
      TPR_14   6 alaeallalGdpdeAiallrra 27 
                  la+ ++a  +p+e  a+l ++
  CTQ30466.1 187 SLAKQMFADNKPQEGFAYLAEM 208
                 68999999999***99999887 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.035
      TPR_14  10 allalGdpdeAiallrralalaPddaeawlllaq 43 
                 a   +G++ +A+a l++a++++  d +a  +l+q
  CTQ30466.1 279 AAVKSGNTTQAVADLQKAVQADSRDSDAVGALGQ 312
                 55679********************999999987 PP

  == domain 5  score: 15.6 bits;  conditional E-value: 2e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPdda 35 
                   al++a+ ++Gd ++A+a l +a+a +Pd++
  CTQ30466.1 307 VGALGQAYSQRGDRARAVAQLSKAIAMDPDSP 338
                 568**************************986 PP

  == domain 6  score: 2.7 bits;  conditional E-value: 0.28
      TPR_14  11 llalGdpdeAiallrralalaPddaeawllla 42 
                  l +G++ +A +++ +a + + +d  a l l+
  CTQ30466.1 362 ALKAGQLSQAQNYYAQAQRVDRTDSYAVLGLG 393
                 5789*************999999988888877 PP

  == domain 7  score: 8.8 bits;  conditional E-value: 0.0032
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawllla 42 
                  l l+++ +a+ + ++A++++++al+l+ ++  a + la
  CTQ30466.1 389 VLGLGDVAAARKEAAAAERYYQQALRLDRGNNLAVRGLA 427
                 67899**********************998888887777 PP

  == domain 8  score: 16.8 bits;  conditional E-value: 8e-06
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlllaq 43 
                  a+al+ +G++++A+++ rr+lal+Pd+ ++ ++la+
  CTQ30466.1 468 QAQALESQGNWAQAAEVQRRRLALDPDSVWITYRLAR 504
                 69*********************************98 PP

  == domain 9  score: 5.6 bits;  conditional E-value: 0.032
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddae 36 
                 + +++la+ l  +G+ +eA al r ++ ++P+dae
  CTQ30466.1 497 WITYRLARDLVSAGERQEADALMRTMVNRQPQDAE 531
                 6789***************************9986 PP

  == domain 10  score: 1.7 bits;  conditional E-value: 0.58
      TPR_14   5 lalaeallalGdpdeAiallrra 27 
                 l+ a  l+ +Gd ++Aial +r 
  CTQ30466.1 578 LRQANQLRDSGDEAQAIALIKRQ 600
                 678999************99985 PP

  == domain 11  score: 11.7 bits;  conditional E-value: 0.00036
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 l la+   ++Gd ++Aia ++r+l++  d+ +a+l la+
  CTQ30466.1 608 LTLADWAQQRGDSQTAIADYQRVLRQEADNGDARLGLAE 646
                 5677788899***************************97 PP

  == domain 12  score: 2.1 bits;  conditional E-value: 0.45
      TPR_14   5 lalaeallalGdpdeAiallrralalaPd 33 
                 ++ a a + lGd+++A +++++++ +a +
  CTQ30466.1 676 RRVALARAGLGDTADAQRIFNQIVPQAKA 704
                 5556677779***********99877665 PP

  == domain 13  score: 6.6 bits;  conditional E-value: 0.016
      TPR_14   4 llalaeallalGdpdeAiallrra 27 
                 l+++a++  ++G p++A++++r+a
  CTQ30466.1 715 LRDAARFATQSGAPQQALTHYREA 738
                 6899******************98 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       3.6   3.8e+03      23      29 ..      58      64 ..      58      65 .. 0.89
   2 ?    1.2   0.0      0.28     3e+02       6      29 ..      75      98 ..      73      99 .. 0.90
   3 ?    4.4   0.0     0.029        30       8      19 ..     127     138 ..     126     148 .. 0.91
   4 !   15.5   0.1   9.9e-06      0.01       1      41 [.     277     317 ..     277     318 .. 0.92
   5 !   16.5   0.1   4.9e-06    0.0051       1      29 [.     311     339 ..     311     339 .. 0.97
   6 ?    1.6   0.6      0.21   2.3e+02       5      37 ..     363     395 ..     359     399 .. 0.89
   7 ?    3.0   0.5     0.077        82      16      38 ..     408     430 ..     393     432 .. 0.77
   8 !    7.3   0.0    0.0036       3.8       5      35 ..     473     503 ..     469     504 .. 0.90
   9 !   17.0   0.2   3.4e-06    0.0035       6      42 .]     616     652 ..     616     652 .. 0.94
  10 ?    0.0   0.0      0.66     7e+02       8      20 ..     726     738 ..     723     740 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.6
      TPR_11 23 ldPdnae 29
                +dP+n+e
  CTQ30466.1 58 IDPNNPE 64
                8*****8 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.28
      TPR_11  6 eqGkyeeAieaYkkAlkldPdnae 29
                 qG+  +A +++++  kl Pd++e
  CTQ30466.1 75 RQGDAAGAQKELERLTKLAPDSPE 98
                5899999****************8 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.029
      TPR_11   8 GkyeeAieaYkk 19 
                 Gk +eAi+aY+k
  CTQ30466.1 127 GKVDEAIAAYEK 138
                 99********98 PP

  == domain 4  score: 15.5 bits;  conditional E-value: 9.9e-06
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 G a ++ G+ ++A+++++kA++ d+ + +a  +LG+ay + 
  CTQ30466.1 277 GLAAVKSGNTTQAVADLQKAVQADSRDSDAVGALGQAYSQR 317
                 6677899*******************************875 PP

  == domain 5  score: 16.5 bits;  conditional E-value: 4.9e-06
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnae 29 
                 G+ay ++G+   A+++++kA++ dPd+++
  CTQ30466.1 311 GQAYSQRGDRARAVAQLSKAIAMDPDSPN 339
                 99*************************96 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.21
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaeayynLGla 37 
                  + G++ +A + Y +A + d ++  a ++LG++
  CTQ30466.1 363 LKAGQLSQAQNYYAQAQRVDRTDSYAVLGLGDV 395
                 578********************9999999987 PP

  == domain 7  score: 3.0 bits;  conditional E-value: 0.077
      TPR_11  16 aYkkAlkldPdnaeayynLGlay 38 
                  Y++Al+ld  n  a  +L+++y
  CTQ30466.1 408 YYQQALRLDRGNNLAVRGLANLY 430
                 5********98888877777777 PP

  == domain 8  score: 7.3 bits;  conditional E-value: 0.0036
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaeayynLG 35 
                  +qG++ +A e+ ++ l+ldPd++++ y L+
  CTQ30466.1 473 ESQGNWAQAAEVQRRRLALDPDSVWITYRLA 503
                 589***********************99986 PP

  == domain 9  score: 17.0 bits;  conditional E-value: 3.4e-06
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 ++G+   Ai++Y++ l+   dn +a ++L+++y++ G
  CTQ30466.1 616 QRGDSQTAIADYQRVLRQEADNGDARLGLAEVYLAEG 652
                 789999***************************9765 PP

  == domain 10  score: 0.0 bits;  conditional E-value: 0.66
      TPR_11   8 GkyeeAieaYkkA 20 
                 G   +A+++Y++A
  CTQ30466.1 726 GAPQQALTHYREA 738
                 55579*******9 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0053       5.6      26      84 ..      13      71 ..       9      73 .. 0.87
   2 ?    4.3   0.1     0.048        51       3      43 ..      94     134 ..      92     140 .. 0.94
   3 !    7.8   0.0     0.004       4.2       4      51 ..     164     211 ..     162     217 .. 0.90
   4 !   18.0   0.5   2.5e-06    0.0026       5      55 ..     287     337 ..     284     349 .. 0.89
   5 !    9.2   0.1    0.0015       1.5      11      54 ..     485     528 ..     475     534 .. 0.84
   6 ?    3.7   0.5     0.072        76       4      61 ..     586     641 ..     580     646 .. 0.81
   7 !    9.9   0.9   0.00087      0.92       5      48 ..     621     664 ..     616     683 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0053
      TPR_20 26 ldlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealgsqdplvakyRrk 84
                l +Al+ la+     A e+Lle ++   + ++++  +q l  +e++++++p  +++R +
  CTQ30466.1 13 LGVALLPLAQAATTPAQEHLLEQVRLGEASNREDLVRQSLYRLELIDPNNPELIAARMR 71
                67899999*****************999998777766677779***********99975 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.048
      TPR_20   3 adapelaeleaalaanpddldarldlAlallaagryeeAle 43 
                  d+pel++ ++++++n  +   +l+ A++l  ag+++eA++
  CTQ30466.1  94 PDSPELKASRNEMKSNTGEGRQALQQARLLGVAGKVDEAIA 134
                 689************************************96 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.004
      TPR_20   4 dapelaeleaalaanpddldarldlAlallaagryeeAleqLleilkr 51 
                 +++ +++l++  a++p ++ +   lA++ +a ++ +e ++ L e+ ++
  CTQ30466.1 164 HSEGVSQLKKLNASAPGNVSLLTSLAKQMFADNKPQEGFAYLAEMARS 211
                 56778999*********************************9998775 PP

  == domain 4  score: 18.0 bits;  conditional E-value: 2.5e-06
      TPR_20   5 apelaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkw 55 
                 ++ +a+l++a++a+  d da  +l +a+ ++g+++ A++qL + ++ d + 
  CTQ30466.1 287 TQAVADLQKAVQADSRDSDAVGALGQAYSQRGDRARAVAQLSKAIAMDPDS 337
                 6789**************************************999988765 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.0015
      TPR_20  11 leaalaanpddldarldlAlallaagryeeAleqLleilkrdrk 54 
                  +++la +pd + + + lA+ l++ag+++eA +++ +++ r+ +
  CTQ30466.1 485 QRRRLALDPDSVWITYRLARDLVSAGERQEADALMRTMVNRQPQ 528
                 47899**************************8888888888765 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.072
      TPR_20   4 dapelaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaar 61 
                 d+ + a+  a ++ +p+ +   l lA+   ++g+ + A++   ++l+++ +  +++ar
  CTQ30466.1 586 DSGDEAQAIALIKRQPSSVRYDLTLADWAQQRGDSQTAIADYQRVLRQEAD--NGDAR 641
                 556667777889999***9********************999999997654..45555 PP

  == domain 7  score: 9.9 bits;  conditional E-value: 0.00087
      TPR_20   5 apelaeleaalaanpddldarldlAlallaagryeeAleqLlei 48 
                 +  +a+ ++ l ++ d+ darl lA+++la+g++ +A +q +++
  CTQ30466.1 621 QTAIADYQRVLRQEADNGDARLGLAEVYLAEGDKPAARAQVMQL 664
                 5678999999*************************999887765 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.15   1.6e+02      11      33 ..      73      95 ..      71      96 .. 0.90
   2 ?    3.4   0.1       0.1   1.1e+02      15      27 ..     127     139 ..     118     141 .. 0.87
   3 ?    6.4   0.0     0.011        12       8      32 ..     277     301 ..     276     303 .. 0.89
   4 !   15.4   0.0   1.4e-05     0.015       5      33 ..     308     336 ..     304     337 .. 0.92
   5 ?    4.7   0.1     0.041        44       7      33 ..     358     384 ..     354     385 .. 0.85
   6 !    7.8   0.2    0.0041       4.3       7      32 ..     392     417 ..     387     419 .. 0.88
   7 ?   -1.5   0.0       3.9   4.1e+03       7      33 ..     468     494 ..     465     495 .. 0.88
   8 ?    2.6   0.0      0.18   1.9e+02      11      33 ..     614     636 ..     608     637 .. 0.81
   9 ?   -2.4   0.0       7.8   8.2e+03       5      21 ..     642     658 ..     639     663 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.15
                HHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8 11 ylklgdyeeAkeyyekaleldpd 33
                +l +gd   A++ +e+ ++l+pd
  CTQ30466.1 73 LLRQGDAAGAQKELERLTKLAPD 95
                5789******************8 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
                 T-HHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyeka 27 
                 g+ +eA+++yek 
  CTQ30466.1 127 GKVDEAIAAYEKL 139
                 899********96 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.011
                 HHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldp 32 
                 g++  k g+  +A++ ++ka+++d 
  CTQ30466.1 277 GLAAVKSGNTTQAVADLQKAVQADS 301
                 6788899**************9986 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                   lg++y++ gd   A++ + ka+ +dpd
  CTQ30466.1 308 GALGQAYSQRGDRARAVAQLSKAIAMDPD 336
                 679*************************8 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.041
                 HHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldpd 33 
                  g+  lk g++ +A+ yy +a + d++
  CTQ30466.1 358 QGDNALKAGQLSQAQNYYAQAQRVDRT 384
                 57778899*************999986 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0041
                 HHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldp 32 
                 lg++    ++  +A+ yy++al+ld+
  CTQ30466.1 392 LGDVAAARKEAAAAERYYQQALRLDR 417
                 78888889999*************98 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 3.9
                 HHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldpd 33 
                  +++++++g+  +A e+ ++ l ldpd
  CTQ30466.1 468 QAQALESQGNWAQAAEVQRRRLALDPD 494
                 5899999999999*9999999999997 PP

  == domain 8  score: 2.6 bits;  conditional E-value: 0.18
                 HHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyyekaleldpd 33 
                  ++ gd + A++ y+++l+ + d
  CTQ30466.1 614 AQQRGDSQTAIADYQRVLRQEAD 636
                 5688*************986665 PP

  == domain 9  score: -2.4 bits;  conditional E-value: 7.8
                 HHHHHHHHHTT-HHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAk 21 
                 + l+ +yl  gd+ +A 
  CTQ30466.1 642 LGLAEVYLAEGDKPAAR 658
                 669999***99986665 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.038        40      14      26 ..     126     138 ..     118     138 .. 0.85
   2 ?    6.0   0.0     0.011        11       8      31 ..     277     300 ..     275     303 .. 0.89
   3 !   12.6   0.0   8.7e-05     0.092       7      33 ..     310     336 ..     305     337 .. 0.95
   4 ?    3.1   0.2     0.089        93      12      33 ..     363     384 ..     355     385 .. 0.90
   5 !    9.9   0.6   0.00062      0.66       6      34 .]     391     419 ..     387     419 .. 0.86
   6 ?   -0.3   0.1       1.1   1.1e+03       8      22 ..     469     483 ..     467     484 .. 0.89
   7 !    6.6   0.0    0.0069       7.2      13      31 ..     616     634 ..     614     637 .. 0.85
   8 ?   -1.8   0.0       3.1   3.2e+03       3      20 ..     640     657 ..     639     659 .. 0.82
   9 ?    1.5   0.0      0.28     3e+02      14      27 ..     725     738 ..     722     739 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.038
                 TT-HHHHHHHHHH CS
       TPR_1  14 lgkydeAleyyek 26 
                  gk deA+++yek
  CTQ30466.1 126 AGKVDEAIAAYEK 138
                 699********98 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.011
                 HHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   8 GnayfklgkydeAleyyekALeln 31 
                 G+a  k g+  +A+++ +kA++ +
  CTQ30466.1 277 GLAAVKSGNTTQAVADLQKAVQAD 300
                 8889999*************9977 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 8.7e-05
                 HHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPn 33 
                 lG+ay + g+   A++  +kA+  +P+
  CTQ30466.1 310 LGQAYSQRGDRARAVAQLSKAIAMDPD 336
                 9*************************8 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.089
                 HHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  12 fklgkydeAleyyekALelnPn 33 
                 +k g++ +A  yy +A +++ +
  CTQ30466.1 363 LKAGQLSQAQNYYAQAQRVDRT 384
                 689*************999987 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00062
                 HHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALelnPnn 34 
                 +lG +    ++   A+ yy++AL+l+  n
  CTQ30466.1 391 GLGDVAAARKEAAAAERYYQQALRLDRGN 419
                 57888888889999***********9865 PP

  == domain 6  score: -0.3 bits;  conditional E-value: 1.1
                 HHHHHHTT-HHHHHH CS
       TPR_1   8 GnayfklgkydeAle 22 
                 ++a+ ++g++ +A e
  CTQ30466.1 469 AQALESQGNWAQAAE 483
                 7899********976 PP

  == domain 7  score: 6.6 bits;  conditional E-value: 0.0069
                 HTT-HHHHHHHHHHHHHHS CS
       TPR_1  13 klgkydeAleyyekALeln 31 
                 + g+ + A+++y+++L+ +
  CTQ30466.1 616 QRGDSQTAIADYQRVLRQE 634
                 7899************865 PP

  == domain 8  score: -1.8 bits;  conditional E-value: 3.1
                 HHHHHHHHHHHTT-HHHH CS
       TPR_1   3 alynlGnayfklgkydeA 20 
                 a  +l+ +y+  g+   A
  CTQ30466.1 640 ARLGLAEVYLAEGDKPAA 657
                 66789********98777 PP

  == domain 9  score: 1.5 bits;  conditional E-value: 0.28
                 TT-HHHHHHHHHHH CS
       TPR_1  14 lgkydeAleyyekA 27 
                  g +++Al +y++A
  CTQ30466.1 725 SGAPQQALTHYREA 738
                 68899*******99 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.4   1.5e+03      13      43 ..      73      98 ..      71     106 .. 0.68
   2 ?    0.6   0.2      0.69   7.2e+02       9      29 ..     119     139 ..     114     142 .. 0.72
   3 !   15.3   0.3   1.7e-05     0.018       9      76 ..     278     335 ..     271     336 .. 0.82
   4 ?    5.2   0.6     0.025        26      46      75 ..     353     382 ..     349     384 .. 0.85
   5 !    9.2   2.7    0.0014       1.4      50      75 ..     391     416 ..     385     440 .. 0.70
   6 !    6.5   0.7    0.0098        10      15      67 ..     467     518 ..     465     526 .. 0.77
   7 ?   -2.9   0.1       8.1   8.5e+03       8      25 ..     579     596 ..     569     599 .. 0.51
   8 !   10.9   0.8    0.0004      0.42       8      65 ..     609     658 ..     603     663 .. 0.76
   9 !   20.2   0.1   5.2e-07   0.00055       3      72 ..     672     739 ..     670     739 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.4
      TPR_12 13 lrrlgrydeAlellekaleiarrllGpdhpl 43
                l+r+g+ + A++ le+   +a     pd+p+
  CTQ30466.1 73 LLRQGDAAGAQKELERLTKLA-----PDSPE 98
                567888888888888876666.....66655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.69
      TPR_12   9 laavlrrlgrydeAlelleka 29 
                  a +l  +g+ deA++ +ek 
  CTQ30466.1 119 QARLLGVAGKVDEAIAAYEKL 139
                 566666778888888888886 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 1.7e-05
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 laav    g+ ++A + l+ka+++ +r           +  +Lg++y+++g+ + A++ l +a+a+++
  CTQ30466.1 278 LAAVK--SGNTTQAVADLQKAVQADSRD--S------DAVGALGQAYSQRGDRARAVAQLSKAIAMDP 335
                 45555..999***********9999544..3......45689***********************975 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.025
      TPR_12  46 ttlrnLgrlyralgryeeAlelleealaia 75 
                 + l+  g+  +++g++ +A++++ +a +++
  CTQ30466.1 353 WLLIKQGDNALKAGQLSQAQNYYAQAQRVD 382
                 5678889999999**********9998876 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.0014
      TPR_12  50 nLgrlyralgryeeAlelleealaia 75 
                 +Lg++  a+++ ++A++++++al+++
  CTQ30466.1 391 GLGDVAAARKEAAAAERYYQQALRLD 416
                 56666666666666666666666654 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.0098
      TPR_12  15 rlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlel 67 
                 ++ +  e++ +  +a e++rr l    p+ +++ + L+r +  +g+ +eA +l
  CTQ30466.1 467 KQAQALESQGNWAQAAEVQRRRL-ALDPDSVWITYRLARDLVSAGERQEADAL 518
                 56667777777888888885554.45677899*************99999876 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 8.1
      TPR_12   8 nlaavlrrlgrydeAlel 25 
                 + a+ lr  g+ ++A++l
  CTQ30466.1 579 RQANQLRDSGDEAQAIAL 596
                 344445555554444444 PP

  == domain 8  score: 10.9 bits;  conditional E-value: 0.0004
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAl 65 
                  la+  +++g+ + A++ ++++l++       d+     ++ +L+++y+a g+  +A+
  CTQ30466.1 609 TLADWAQQRGDSQTAIADYQRVLRQE-----ADN---GDARLGLAEVYLAEGDKPAAR 658
                 59999*****************7777.....333...345677777777777777776 PP

  == domain 9  score: 20.2 bits;  conditional E-value: 5.2e-07
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 +++++++a++ + lg+ ++A++++++ + +a++   p + + a +lr+ +r   ++g +++Al +++ea+
  CTQ30466.1 672 MNMQRRVALARAGLGDTADAQRIFNQIVPQAKAQ--PPSMESALVLRDAARFATQSGAPQQALTHYREAM 739
                 6899899************************999..99******************************96 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.6   4.6e-05     0.049      20      67 ..      54     101 ..      41     106 .. 0.89
   2 ?    0.8   0.0      0.53   5.6e+02      47      72 ..     234     259 ..     232     260 .. 0.88
   3 !   11.0   0.1   0.00033      0.35      34      65 ..     275     306 ..     268     310 .. 0.90
   4 !   13.1   0.3   7.7e-05     0.082      35      67 ..     310     342 ..     303     348 .. 0.87
   5 ?   -1.0   0.3       1.9   2.1e+03       4      25 ..     395     416 ..     364     430 .. 0.73
   6 !    9.5   4.5   0.00097         1       4      65 ..     471     532 ..     468     536 .. 0.92
   7 !    9.5   1.2     0.001       1.1      34      67 ..     609     642 ..     591     645 .. 0.82
   8 ?    1.4   0.4      0.33   3.5e+02       3      56 ..     646     699 ..     644     713 .. 0.78
   9 ?    2.6   0.2      0.14   1.5e+02      30      55 ..     713     738 ..     708     754 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.6e-05
       TPR_9  20 rllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaea 67 
                 rl l++P+ pe++  R + l ++G+ ++A ++Le+   lapd p+  a
  CTQ30466.1  54 RLELIDPNNPELIAARMRYLLRQGDAAGAQKELERLTKLAPDSPELKA 101
                 66688*************************************998765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.53
       TPR_9  47 aAladLeaylalapdapdaeairaqL 72 
                 a +++L+++l + p    a+ +r +L
  CTQ30466.1 234 ASVQALQQFLLQFPTGSVAANARVLL 259
                 7899**********999999988776 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00033
       TPR_9  34 dRGlllaqlGclsaAladLeaylalapdapda 65 
                   Gl+ +++G++ +A+adL+ +++ +  + da
  CTQ30466.1 275 SEGLAAVKSGNTTQAVADLQKAVQADSRDSDA 306
                 569********************999988887 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 7.7e-05
       TPR_9  35 RGlllaqlGclsaAladLeaylalapdapdaea 67 
                  G+++ q+G+ + A+a L  ++a++pd p +  
  CTQ30466.1 310 LGQAYSQRGDRARAVAQLSKAIAMDPDSPNRGK 342
                 79**************************99876 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 1.9
       TPR_9   4 iaireedweralavverlllla 25 
                 +a+ ++++++a ++++  l l+
  CTQ30466.1 395 VAAARKEAAAAERYYQQALRLD 416
                 4556666666666666666665 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.00097
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65 
                 ++ ++ +w++a +v+ r+l+l+Pd++   +  ++ l+  G  ++A a + +++  +p+++++
  CTQ30466.1 471 ALESQGNWAQAAEVQRRRLALDPDSVWITYRLARDLVSAGERQEADALMRTMVNRQPQDAER 532
                 5678999*************************************************988765 PP

  == domain 7  score: 9.5 bits;  conditional E-value: 0.001
       TPR_9  34 dRGlllaqlGclsaAladLeaylalapdapdaea 67 
                   +   +q+G+ ++A+ad ++ l+++ d+ da++
  CTQ30466.1 609 TLADWAQQRGDSQTAIADYQRVLRQEADNGDARL 642
                 5667789**********************99985 PP

  == domain 8  score: 1.4 bits;  conditional E-value: 0.33
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeayl 56 
                 ++++ e d ++a a v  l     ++    r  +l++a lG+++ A + +++ +
  CTQ30466.1 646 EVYLAEGDKPAARAQVMQLKGAETESMNMQRRVALARAGLGDTADAQRIFNQIV 699
                 677788888888888888888888888888999***********9988777766 PP

  == domain 9  score: 2.6 bits;  conditional E-value: 0.14
       TPR_9  30 eerrdRGlllaqlGclsaAladLeay 55 
                   +rd ++   q+G++++Al     +
  CTQ30466.1 713 LVLRDAARFATQSGAPQQALTHYREA 738
                 568****************9876655 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.44   4.6e+02      13      26 ..     127     140 ..     116     150 .. 0.78
   2 ?   -1.3   0.0       2.9     3e+03       9      32 ..     280     303 ..     277     307 .. 0.73
   3 !   13.7   0.0   4.5e-05     0.048       3      34 ..     308     337 ..     306     340 .. 0.84
   4 ?    0.3   0.2      0.89   9.4e+02      12      34 ..     365     385 ..     363     387 .. 0.76
   5 ?    5.2   0.2     0.023        25      16      32 ..     403     417 ..     389     422 .. 0.70
   6 !    8.9   0.1    0.0015       1.6       6      33 ..     469     494 ..     465     496 .. 0.83
   7 ?    0.6   0.1       0.7   7.4e+02       4      34 ..     501     529 ..     499     531 .. 0.80
   8 !    9.1   0.4    0.0014       1.4       5      34 ..     610     639 ..     608     641 .. 0.83
   9 ?    1.7   0.0      0.32   3.3e+02       6      28 ..     719     739 ..     714     751 .. 0.83
  10 ?   -1.2   0.0       2.7   2.8e+03      15      25 ..     773     783 ..     767     788 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.44
       TPR_7  13 GdyeeAielyeqsL 26 
                 G+ +eAi  ye++ 
  CTQ30466.1 127 GKVDEAIAAYEKLY 140
                 899********965 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.9
       TPR_7   9 ysrlGdyeeAielyeqsLaltkdp 32 
                  ++ G++ +A+  ++++ + ++++
  CTQ30466.1 280 AVKSGNTTQAVADLQKAVQADSRD 303
                 57899999**99999966555555 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 4.5e-05
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltkdped 34 
                  +L+++ys++Gd+++A+  + +  a++ dp+ 
  CTQ30466.1 308 GALGQAYSQRGDRARAVAQLSK--AIAMDPDS 337
                 58********************..66666654 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.89
       TPR_7  12 lGdyeeAielyeqsLaltkdped 34 
                  G+ ++A  +y q  a + d +d
  CTQ30466.1 365 AGQLSQAQNYYAQ--AQRVDRTD 385
                 5778899999999..88777665 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.023
       TPR_7  16 eeAielyeqsLaltkdp 32 
                 + A+++y+q  al+ d 
  CTQ30466.1 403 AAAERYYQQ--ALRLDR 417
                 689******..555554 PP

  == domain 6  score: 8.9 bits;  conditional E-value: 0.0015
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkdpe 33 
                 a++ +++G++++A+e+ ++  +l+ dp+
  CTQ30466.1 469 AQALESQGNWAQAAEVQRR--RLALDPD 494
                 8999***************..5555554 PP

  == domain 7  score: 0.6 bits;  conditional E-value: 0.7
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdped 34 
                 +Lar  ++ G+++eA  l +    + ++p+d
  CTQ30466.1 501 RLARDLVSAGERQEADALMRT--MVNRQPQD 529
                 7999999********999887..66666666 PP

  == domain 8  score: 9.1 bits;  conditional E-value: 0.0014
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltkdped 34 
                 La++ +++Gd ++Ai  y+++L+ + d +d
  CTQ30466.1 610 LADWAQQRGDSQTAIADYQRVLRQEADNGD 639
                 999*****************7766666665 PP

  == domain 9  score: 1.7 bits;  conditional E-value: 0.32
       TPR_7   6 arlysrlGdyeeAielyeqsLal 28 
                 ar   + G  ++A+++y++  a+
  CTQ30466.1 719 ARFATQSGAPQQALTHYRE--AM 739
                 6666788999*********..55 PP

  == domain 10  score: -1.2 bits;  conditional E-value: 2.7
       TPR_7  15 yeeAielyeqs 25 
                 +++A++ly+q+
  CTQ30466.1 773 RSDAADLYRQQ 783
                 68999999994 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.56   5.9e+02      62      81 ..     119     138 ..     100     139 .. 0.77
   2 ?    0.5   0.0      0.69   7.3e+02       5      22 ..     129     146 ..     126     214 .. 0.47
   3 !    6.8   0.0    0.0075         8       7      49 ..     288     330 ..     282     339 .. 0.84
   4 ?   -2.5   0.1       6.1   6.5e+03      33      53 ..     362     382 ..     349     391 .. 0.67
   5 ?    5.6   0.0     0.017        18      24      75 ..     462     515 ..     456     521 .. 0.85
   6 ?   -1.8   0.0       3.5   3.7e+03      24      63 ..     574     611 ..     560     616 .. 0.74
   7 ?    2.7   0.0      0.15   1.5e+02       4      53 ..     619     669 ..     616     695 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.56
                 HHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  62 fAqcllkLkkyeeAiaaLek 81 
                  A+ l   +k++eAiaa+ek
  CTQ30466.1 119 QARLLGVAGKVDEAIAAYEK 138
                 566677789********998 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.69
                 HHHHHHHHHHHH.HHH-- CS
      ANAPC3   5 yknAiflaerllaaetes 22 
                  ++Ai  +e+l+   +++
  CTQ30466.1 129 VDEAIAAYEKLYGGVPDD 146
                 456666666666333333 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0075
                 HHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3   7 nAiflaerllaaetespedayllAlclylngqykrAyellrka 49 
                  A+  + ++++a++++++++ +l++++ ++g+  rA   l+ka
  CTQ30466.1 288 QAVADLQKAVQADSRDSDAVGALGQAYSQRGDRARAVAQLSKA 330
                 56666678889*****************************998 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 6.1
                 HHHTT-HHHHHHHHHCTSHHH CS
      ANAPC3  33 lylngqykrAyellrkaklns 53 
                  +++gq  +A++++ +a+  +
  CTQ30466.1 362 ALKAGQLSQAQNYYAQAQRVD 382
                 578888889998888885444 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.017
                 HHHHHH.HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHH CS
      ANAPC3  24 edayll.AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeA 75 
                 +d++ + A++l ++g++ +A e+ r+   l++ s  + y +A+ l+  ++ +eA
  CTQ30466.1 462 NDRLEKqAQALESQGNWAQAAEVQRRRlALDPDSVWITYRLARDLVSAGERQEA 515
                 5555544***************************99999999999999888888 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 3.5
                 HHHHH.HHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHH CS
      ANAPC3  24 edayl.lAlclylngqykrAyellrkaklnskslgcrylfA 63 
                 +d+ l  A  l  +g+  +A+ l+++    ++s ++ +++A
  CTQ30466.1 574 SDRVLrQANQLRDSGDEAQAIALIKRQ---PSSVRYDLTLA 611
                 5555535889999999999*9999999...77777777766 PP

  == domain 7  score: 2.7 bits;  conditional E-value: 0.15
                 -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHH CS
      ANAPC3   4 nyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klns 53 
                 + ++Ai  + r+l +e+++ ++++ lA++++  g+   A   + ++ + + 
  CTQ30466.1 619 DSQTAIADYQRVLRQEADNGDARLGLAEVYLAEGDKPAARAQVMQLkGAET 669
                 5689999999999888999999999**********7766665555544333 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.3      0.11   1.1e+02     144     184 ..      61     101 ..      28     103 .. 0.75
   2 ?    1.3   0.0      0.15   1.6e+02       9      53 ..     114     160 ..     105     214 .. 0.79
   3 ?    3.6   4.6     0.031        33     138     211 ..     260     332 ..     234     337 .. 0.69
   4 ?    4.7   0.5     0.014        15     150     180 ..     308     338 ..     302     365 .. 0.72
   5 ?    1.1   4.4      0.17   1.8e+02      17      96 ..     361     438 ..     349     442 .. 0.64
   6 !    7.2   3.4    0.0024       2.5     152     235 ..     468     549 ..     461     560 .. 0.86
   7 !   18.3   5.6     1e-06    0.0011     144     245 ..     602     703 ..     558     709 .. 0.81
   8 !    8.1   0.3    0.0013       1.3     135     176 ..     697     742 ..     690     748 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.11
      TPR_15 144 qsaafllaraelyrqegqtdaAlrdyreAlalapdsselra 184
                 +++   +ar ++ +++g+ + A + +++  +lapds el+a
  CTQ30466.1  61 NNPELIAARMRYLLRQGDAAGAQKELERLTKLAPDSPELKA 101
                 56788899******************************997 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.15
      TPR_15   9 nealklatllykqgdvkkAlevLkeaaqkaapskdt...eyWrtladL 53 
                 ++al++a+ll   g+v++A ++ ++    + p++ +   eyW ++a L
  CTQ30466.1 114 RQALQQARLLGVAGKVDEAIAAYEKLYGGV-PDDVDvaiEYWTLVARL 160
                 688999999999999999888886666665.44444577***999988 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.031
      TPR_15 138 eeeaaeqsaafllarae..lyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkarae 211
                  +++a+ +   + ar+e  ++ + g+t +A+ d+++A++++  +s++  al  ++  +g ra   ++++++ ++ +
  CTQ30466.1 260 DQQQAQLQDPTFRARSEglAAVKSGNTTQAVADLQKAVQADSRDSDAVGALGQAYSQRGDRA---RAVAQLSKAIA 332
                 56667755555666665335778888888888888888888888888877777777666666...36666665554 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.014
      TPR_15 150 laraelyrqegqtdaAlrdyreAlalapdss 180
                  a++++y+q+g+ ++A+ ++ +A+a++pds 
  CTQ30466.1 308 GALGQAYSQRGDRARAVAQLSKAIAMDPDSP 338
                 57899***********************974 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.17
      TPR_15  17 llykqgdvkkAlevLkeaaqkaapskdteyWrtladLAwalqqedearkAyrqLlasgkaraedyerliellydaepkea 96 
                 +++k g++ +A +   ++aq+++  +d +    l+d A a ++ ++a++ y+q l+ + ++      l +l++ ++p++a
  CTQ30466.1 361 NALKAGQLSQAQNYY-AQAQRVD-RTDSYAVLGLGDVAAARKEAAAAERYYQQALRLDRGNNLAVRGLANLYRAESPEKA 438
                 455566666666666.4556663.44444455567777777777777777777777777777777777777777777666 PP

  == domain 6  score: 7.2 bits;  conditional E-value: 0.0024
      TPR_15 152 raelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkaraesdasLwgplaaAlllLgrpkkALe 235
                  a++ + +g++++A ++ r+ lal+pds  +  +l   l+ +g+r+e+ +l+++  +r+ +da    ++a++l l g+ +  L+
  CTQ30466.1 468 QAQALESQGNWAQAAEVQRRRLALDPDSVWITYRLARDLVSAGERQEADALMRTMVNRQPQDA--ERVYASGLYLSGNDQDDLA 549
                 5899999*************************************************9966665..5788888777777666555 PP

  == domain 7  score: 18.3 bits;  conditional E-value: 1e-06
      TPR_15 144 qsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkaraesdasLwgplaaAlllLgrpkkALeylrkqak 242
                 +s ++ l +a +++q+g+++ A+ dy+++l+ ++d+ ++r +l  +++  g +  +r+ + ++k+++ ++ +++   a A + Lg+++ A + +++   
  CTQ30466.1 602 SSVRYDLTLADWAQQRGDSQTAIADYQRVLRQEADNGDARLGLAEVYLAEGDKPAARAQVMQLKGAETESMNMQRRVALARAGLGDTADAQRIFNQIVP 700
                 344555789**************************************99999999**********************************9888877555 PP

      TPR_15 243 enr 245
                 + +
  CTQ30466.1 701 QAK 703
                 554 PP

  == domain 8  score: 8.1 bits;  conditional E-value: 0.0013
      TPR_15 135 sleeeeaae....qsaafllaraelyrqegqtdaAlrdyreAlala 176
                 ++ ++++a+    +sa++l   a++++q g++++Al+ yreA++++
  CTQ30466.1 697 QIVPQAKAQppsmESALVLRDAARFATQSGAPQQALTHYREAMVAS 742
                 4444444444444999**************************9765 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1    0.0022       2.3      11      33 .]      74      96 ..      65      96 .. 0.84
   2 ?    5.8   0.1     0.024        25       4      26 ..     117     139 ..     115     145 .. 0.87
   3 ?    1.1   0.0      0.76     8e+02      18      31 ..     234     247 ..     226     248 .. 0.87
   4 ?    2.4   0.1      0.27   2.9e+02       7      28 ..     277     298 ..     272     301 .. 0.82
   5 ?    6.8   0.2     0.011        12       6      33 .]     310     337 ..     309     337 .. 0.94
   6 ?    1.0   0.9       0.8   8.4e+02       5      26 ..     357     378 ..     354     380 .. 0.84
   7 ?    0.1   2.8       1.6   1.7e+03       1      28 [.     387     414 ..     387     416 .. 0.88
   8 ?    3.0   0.3      0.18   1.9e+02       5      21 ..     467     483 ..     465     487 .. 0.91
   9 ?    3.7   0.1      0.11   1.2e+02       4      32 ..     500     528 ..     499     529 .. 0.94
  10 ?    6.9   0.2      0.01        11       8      30 ..     613     634 ..     608     637 .. 0.76
  11 ?    4.0   0.2     0.085        90       1      21 [.     639     659 ..     639     663 .. 0.90
  12 ?    4.5   0.1      0.06        63       6      27 ..     678     699 ..     676     699 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0022
                HHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6 11 rklgdtdkAlealerlikeYPdS 33
                +++gd++ A + lerl k  PdS
  CTQ30466.1 74 LRQGDAAGAQKELERLTKLAPDS 96
                3479******************9 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.024
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerl 26 
                 +++a+++  +g+ d+A++a+e+l
  CTQ30466.1 117 LQQARLLGVAGKVDEAIAAYEKL 139
                 57888888889**********98 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.76
                 HHHHHHHHHHHH-T CS
       TPR_6  18 kAlealerlikeYP 31 
                 ++++al++++ ++P
  CTQ30466.1 234 ASVQALQQFLLQFP 247
                 6799*********9 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealerlik 28 
                 +l+  k g+t++A++ l++ ++
  CTQ30466.1 277 GLAAVKSGNTTQAVADLQKAVQ 298
                 55666657**********9986 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYPdS 33 
                 l+++y + gd ++A++ l + i   PdS
  CTQ30466.1 310 LGQAYSQRGDRARAVAQLSKAIAMDPDS 337
                 799999989**************99998 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.8
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerl 26 
                 k++   +k+g+ ++A  ++ + 
  CTQ30466.1 357 KQGDNALKAGQLSQAQNYYAQA 378
                 7788888999*********985 PP

  == domain 7  score: 0.1 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlik 28 
                 +A + l+    + +++++A +++++ ++
  CTQ30466.1 387 YAVLGLGDVAAARKEAAAAERYYQQALR 414
                 6889999999998899*********986 PP

  == domain 8  score: 3.0 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAle 21 
                 k+a++++++g++++A e
  CTQ30466.1 467 KQAQALESQGNWAQAAE 483
                 79*************87 PP

  == domain 9  score: 3.7 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   4 yklalsyrklgdtdkAlealerlikeYPd 32 
                 y+la+ + ++g+ ++A ++++  +++ P+
  CTQ30466.1 500 YRLARDLVSAGERQEADALMRTMVNRQPQ 528
                 89999999999***************997 PP

  == domain 10  score: 6.9 bits;  conditional E-value: 0.01
                 HHHHHHHHHHHHHHHHHHHHHH- CS
       TPR_6   8 lsyrklgdtdkAlealerlikeY 30 
                 ++++++ d+++A++ ++r++++ 
  CTQ30466.1 613 WAQQRG-DSQTAIADYQRVLRQE 634
                 455555.*************985 PP

  == domain 11  score: 4.0 bits;  conditional E-value: 0.085
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAle 21 
                 dA + la+ y++ gd+ +A++
  CTQ30466.1 639 DARLGLAEVYLAEGDKPAARA 659
                 799*********99*999986 PP

  == domain 12  score: 4.5 bits;  conditional E-value: 0.06
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerli 27 
                  al++  lgdt++A +++++++
  CTQ30466.1 678 VALARAGLGDTADAQRIFNQIV 699
                 578888899*********9975 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1       0.3   3.2e+02       8      34 .]      58      84 ..      55      84 .. 0.89
   2 ?    9.5   0.0    0.0013       1.4       2      33 ..     293     324 ..     292     325 .. 0.92
   3 ?   -1.0   0.0       2.8     3e+03       4      13 ..     329     338 ..     327     372 .. 0.72
   4 ?   -2.2   0.1       6.8   7.1e+03       2      33 ..     375     406 ..     374     407 .. 0.82
   5 ?   -1.9   0.1       5.5   5.8e+03       1      23 [.     408     430 ..     408     433 .. 0.72
   6 ?   -2.4   0.3       8.2   8.6e+03      20      32 ..     469     481 ..     467     483 .. 0.86
   7 ?   -0.9   0.0       2.6   2.8e+03       6      21 ..     489     504 ..     486     515 .. 0.86
   8 ?   12.0   0.1    0.0002      0.21       2      33 ..     627     658 ..     626     659 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.3
      TPR_17  8 ldPnnadaynnLAelllknGdlmtArq 34
                +dPnn+++   + ++ll++Gd + A++
  CTQ30466.1 58 IDPNNPELIAARMRYLLRQGDAAGAQK 84
                49*******999999******999985 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0013
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 ++ka++ d  ++da   L+++++++Gd ++A+
  CTQ30466.1 293 LQKAVQADSRDSDAVGALGQAYSQRGDRARAV 324
                 58*************************88886 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2.8
      TPR_17   4 kaleldPnna 13 
                 ka++ dP+++
  CTQ30466.1 329 KAIAMDPDSP 338
                 8999999984 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 6.8
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 y +a + d ++++a   L+ + + +++ + A+
  CTQ30466.1 375 YAQAQRVDRTDSYAVLGLGDVAAARKEAAAAE 406
                 77888889999999999999998888887776 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 5.5
      TPR_17   1 lylkaleldPnnadaynnLAell 23 
                 +y++al+ld  n  a   LA+l+
  CTQ30466.1 408 YYQQALRLDRGNNLAVRGLANLY 430
                 69999999977766666666666 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 8.2
      TPR_17  20 AelllknGdlmtA 32 
                 A++l+++G++++A
  CTQ30466.1 469 AQALESQGNWAQA 481
                 89999***99988 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 2.6
      TPR_17   6 leldPnnadaynnLAe 21 
                 l+ldP++++  + LA+
  CTQ30466.1 489 LALDPDSVWITYRLAR 504
                 789******9999996 PP

  == domain 8  score: 12.0 bits;  conditional E-value: 0.0002
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 y+++l+++ +n da   LAe++l  Gd+  Ar
  CTQ30466.1 627 YQRVLRQEADNGDARLGLAEVYLAEGDKPAAR 658
                 9**************************99887 PP

>> KAsynt_C_assoc  Ketoacyl-synthetase C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00057       0.6      36     101 ..     252     317 ..     247     323 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00057
  KAsynt_C_assoc  36 GsnvHviLksnkkekrkeeskeeslprLlvlsgrteeaveallekleehlldaellsllneilsee 101
                      +n+ v+L++++ + ++++ + +s+    v sg+t +av +l +++++ ++d++ +  l +++s++
      CTQ30466.1 252 AANARVLLDQQQAQLQDPTFRARSEGLAAVKSGNTTQAVADLQKAVQADSRDSDAVGALGQAYSQR 317
                     68**********9999999995666666677************************99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.85u 0.25s 00:00:01.10 Elapsed: 00:00:00.48
# Mc/sec: 7275.52
//
Query:       CTQ30467.1  [L=369]
Description: endo-1,4-D-glucanase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-115  386.2   0.1   1.3e-115  385.9   0.1    1.0  1  Glyco_hydro_8  Glycosyl hydrolases family 8


Domain annotation for each model (and alignments):
>> Glyco_hydro_8  Glycosyl hydrolases family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  385.9   0.1  7.4e-120  1.3e-115       1     342 []       2     347 ..       2     347 .. 0.96

  Alignments for each domain:
  == domain 1  score: 385.9 bits;  conditional E-value: 7.4e-120
                    XXXXXXXXXXXXXXXXXXXXXX---H.HHHHHHHHHB-TTS-B-BTTSTT-BEEHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHST..TTTS--- CS
  Glyco_hydro_8   1 invpmsgivallllaafadsaaianaleWeqfkskyitseGRvqdtgnanksttsEGqgyglllavaagdraaFdnlyrwtkvnLaq..tkekLfs 94 
                    ++v+ +++   lllaa  + aa+ ++ +Weqfk++y+++eGRv+d+++a+k+ tsEGq+ygl++a+aa+dra Fd+l++wt++nLa+  +k++L+ 
     CTQ30467.1   2 MKVLCGAVLSALLLAAGQVGAACQWP-AWEQFKQAYVSPEGRVIDPSDARKISTSEGQSYGLFFALAANDRAGFDKLLTWTQNNLAEgdLKQHLPG 96 
                    5677788888999999999******9.***********************************************************999******* PP

                    SEEEE-TTS-EEE.E-S-BHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH.HHEEEET.TE.EEE-SSSSSSBESSEEEE-TTSS-HHHHHH CS
  Glyco_hydro_8  95 Wrfdksenskvkd.dknnAsDgDvliAlsLlkAgkkwkeqrynyitdalakiia.venvmve.aGtvvllpGavgfakndsvilNpSYfaPalaqf 187
                    W+++k++++++   d+n+AsD+D++iA++Ll+Ag++w++ +y++ ++al+ +i  +e v v+ +G ++llpG+vgfa+++ +++NpSY++P la +
     CTQ30467.1  97 WLWGKKDDEQWTLlDSNSASDSDLWIAWALLEAGRLWQQPQYTETGKALLARIVaEETVAVPgLG-TMLLPGKVGFADDSGWRFNPSYLPPQLATY 191
                    ************99***********************************9999934555555555.****************************** PP

                    HGGG-TT.HHHHHHHHHHHHHHT-T..TS---SSEEEETTTEEE-S--TT-EESTTTHHHHHHHHTS-TTSHHHHHHHHHTHHHHHHHHHHSS-ES CS
  Glyco_hydro_8 188 adrtgaprWrqvaedslrlvdearfgqkglspDWvavnadkalalaaefplrasydaiRvalylswyddadkakadalsnFkkiayanikdgytpe 283
                    + r+gap W  +++ +lrl+ e+++  kg++pDWv++++ k+++l++e+p++ sydaiRv+l++++ +d dk+ka++l++F ++a ++ ++g +pe
     CTQ30467.1 192 FVRFGAP-WPALRDSNLRLLLETAP--KGFTPDWVRYEKGKGWQLKTEKPPIGSYDAIRVYLWVGMLHDGDKQKARLLQRFAPMAAQTTEQGIPPE 284
                    *******.*****************..********************************************************************* PP

                    EEETTT--EESE-.-HHHHHHHHHH--SHHHH.....HHHHT---TT-HHHHHHHHHHHHHHTT CS
  Glyco_hydro_8 284 kvdvasgktatynaaagllavadltlanriag.....eladlkdasedYysaaLrllvllarak 342
                    kv++a+gkt++ + ++g++a++ ++l++  a      ++ad+ +++++Yysa+L+l++++++++
     CTQ30467.1 285 KVNIATGKTSGQG-PVGFSAAMLPFLQDDEARsvqrqRVADNYPGADAYYSAVLTLFGQGWDQH 347
                    *************.**************877688888*************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2713.93
//
Query:       CTQ30468.1  [L=767]
Description: regulator of cellulose synthase, cyclic di-GMP binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.4e-221  735.5   1.3   5.1e-221  735.3   1.3    1.0  1  BcsB            Bacterial cellulose synthase subunit
  ------ inclusion threshold ------
      0.065   12.9   0.0        1.9    8.3   0.0    2.5  2  End_N_terminal  N terminal extension of bacteriophage endosia


Domain annotation for each model (and alignments):
>> BcsB  Bacterial cellulose synthase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  735.3   1.3  5.7e-225  5.1e-221       2     606 .]      59     668 ..      58     668 .. 0.97

  Alignments for each domain:
  == domain 1  score: 735.3 bits;  conditional E-value: 5.7e-225
        BcsB   2 rtetlsfadlgvp.gdltLrGvddegglsfglradqvvtnasLsLaytvSpaLlaelshLkvllNgellgtlplekedagke.evsldipprlltdfNr 98 
                 r+ +lsfa ++ p g++ LrG++++++++fg+r+d++v+na L+L+yt+Sp+Ll+ +s+Lkv+lN+el+g+lp++ke+ gk+ +++l+i+p ++tdfNr
  CTQ30468.1  59 REVKLSFATIAPPpGSIVLRGSRPDASVEFGMRSDELVANALLNLEYTPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKiRAQLPIDPLYITDFNR 157
                 67899********9************************************************************************************* PP

        BcsB  99 lrlelighytedCedpassslwaeIspdStLeltgqklelkndLsllpapffdkrdserlelpivfpaapdpatlqaAgivAswfGaladyrgadfpvs 197
                 +rle++ghy++ Ce+pass+lw++++++S+L+lt+q+l+++ndLs++p pf+d+rd+++l+lp++fp++p  +++qaA+ivAswfG++a++rg++fpv+
  CTQ30468.1 158 VRLEFVGHYRDVCENPASSTLWLDVGRESYLDLTYQSLKVNNDLSHFPVPFYDPRDNRPLKLPMIFPGSPAVTQQQAAAIVASWFGSKAGWRGQQFPVY 256
                 *************************************************************************************************** PP

        BcsB 198 tdqlPeegnavvfatndekpagl.dlPevegptlavidnPsdpegklLlvtGrddaelrkAakaLalgsallsgdtvsvdavkelpprkpydAPrwvpt 295
                 +++lP+ +na+vfatnd++p++l d+P+v++pt+++idnP+dp+ klL++ Grdd++l  Aak++a+g+ l++g++v+vd  k+l+pr+pydAP+wv+t
  CTQ30468.1 257 FNELPD-RNAIVFATNDKRPDFLrDHPPVKAPTIEMIDNPNDPYVKLLVIFGRDDNDLLLAAKGIAQGNILFRGSSVTVDGIKTLQPRQPYDAPNWVRT 354
                 ******.******************************************************************************************** PP

        BcsB 296 drpvrLseLgaeseelqvrGlrpdpislnfrlPpDlflwrgegiplqlryrytaasredrtSrlsvslNgqfigslpLssetgeekkllg......lda 388
                 dr+v+++eL++++++lq++Gl pd+i+++++lPpDl+l r +gi+++l+yryt ++ +d+ Sr+++slN+qf++s++L+s+++ +k +l+      l +
  CTQ30468.1 355 DRSVTFAELKTYEQQLQSSGLVPDAITVALNLPPDLYLLRANGIDMDLKYRYTMPPVKDS-SRMDISLNDQFLQSFSLNSSQDVNKLILRlpvlqgLLD 452
                 ***********************************************************5.************************98866678865444 PP

        BcsB 389 sqeqlevtlpasllksanqLqfefdlepk....kdgeCeavapdnlraaIdpdStidlsgfahyaalPnLaafanaGFPFtrlADlseTavvlpdrpta 483
                  ++  evt+pa +l++ nqL+f+f+++++    + ++C++ +p +++++I +dStid+s+++h++alP+L++fanaGFP++r+ADls+T+vv+p+ pt+
  CTQ30468.1 453 GKS--EVTIPALRLGAVNQLRFDFQYMNPmpggSIDNCITFQPVQNHVVIGDDSTIDFSKYYHFIALPDLRVFANAGFPYSRMADLSDTLVVVPKAPTQ 549
                 444..5*********************9999*9999*************************************************************** PP

        BcsB 484 aelsallnllgrmGaqtgypalrvtvadaadaesladkdlLvigslesqpllarlekslpllldq..rrlelkdrseelkelksgrlrrddekadadis 580
                  ++++ll++lg +G+qtg++a++++++d++++ +++d+dlL+ig+++s   + +++++++ll+++  +++++++r+ +l+   s  ++++ ++++ +++
  CTQ30468.1 550 GQVATLLQALGGIGSQTGLAAINLQMTDDGNQIKNKDADLLLIGAIPS---SLKDDTKINLLVEAtkSWVKMPMRHYDLA---SIYPDDEARTPNTRTD 642
                 **********************************************99...78888999999997689999999998885...4555558889****** PP

        BcsB 581 lsssgplaalvgfesPfnsgrsvval 606
                 ++ssgp+aa++gf+sP+n++rsvval
  CTQ30468.1 643 ITSSGPMAAVIGFQSPYNDQRSVVAL 668
                 ************************97 PP

>> End_N_terminal  N terminal extension of bacteriophage endosialidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00021       1.9      32      55 ..     511     534 ..     500     541 .. 0.89
   2 ?    1.5   0.0     0.027   2.4e+02       8      25 ..     660     677 ..     656     683 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00021
                     EEEESS---GGGEES-EEEE-SST CS
  End_N_terminal  32 tykvssLPDisrfknarfvyeRia 55 
                      y    LPD+  f na f y R+a
      CTQ30468.1 511 YYHFIALPDLRVFANAGFPYSRMA 534
                     578889****************98 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.027
                     E-HHHHHHHHHHS-TTS- CS
  End_N_terminal   8 dDtdalsevlaaapvgkk 25 
                     +D+ ++ ++la++p g+ 
      CTQ30468.1 660 NDQRSVVALLADSPRGNE 677
                     8*************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5235.45
//
Query:       CTQ30469.1  [L=872]
Description: cellulose synthase, catalytic subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-34  117.1   0.0    1.1e-33  116.5   0.0    1.3  1  Glycos_transf_2  Glycosyl transferase family 2
      1e-17   64.7   0.6      1e-17   64.7   0.6    3.2  3  Glyco_trans_2_3  Glycosyl transferase family group 2
    1.1e-17   64.7   0.0    1.8e-17   64.0   0.0    1.3  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    9.3e-16   57.5   6.6    7.1e-13   48.0   3.3    3.3  3  Cellulose_synt   Cellulose synthase
    3.5e-13   49.4   0.0    6.6e-13   48.5   0.0    1.4  1  Glyco_transf_21  Glycosyl transferase family 21
    5.5e-13   49.1   0.0      1e-12   48.3   0.0    1.4  1  PilZ             PilZ domain


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   0.0   3.5e-37   1.1e-33       1     169 [.     276     446 ..     276     447 .. 0.97

  Alignments for each domain:
  == domain 1  score: 116.5 bits;  conditional E-value: 3.5e-37
                      EEEEEESS-.TTTHHHHHHHHHHH.GGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-.HHHHHHHHHHHH--SSEEEEEESSEE CS
  Glycos_transf_2   1 svviptyNe.ektlletlesllaq.dpypdfeiivvDDgStDetveileelakedprvrvirreenv.GkagalnaglraatgdyilflDaDde 91 
                      ++++ptyNe  + +++t+ +   + +p++++ i+++DDg ++  ++++++      +v++i r+  + +kag++n++l++a+g+++ ++D D++
       CTQ30469.1 276 DIFVPTYNEdLNVVKNTIYASQGIdWPKDKLNIWILDDGGREAFRQFAKDV-----GVHYIARTSHEhAKAGNINNALKYAKGEFVSIFDCDHV 364
                      69*****************55555***************************.....9************************************* PP

                      E-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS.....EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHC CS
  Glycos_transf_2  92 pdpdwleklvealekdgadvvlgqrprifgetdeiernkrv.....generlyfkerkrslkgnlsfeigsaallrrealeel 169
                      p++ +l+ +++++ k ++ ++++q+p++f ++d++ern++      +e + +y+  +++++ ++++f++gs+a++rr  l+e+
       CTQ30469.1 365 PTRSFLQMTMGWFLK-EKELAMMQTPHHFFSPDPFERNLGRfrktpNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRGPLDEI 446
                      ***************.999*********************9***************************************997 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.7  10.6         6   1.8e+04     195     195 ..     190     190 ..     141     257 .. 0.52
   2 !   64.7   0.6   3.5e-21     1e-17       3     196 ..     357     565 ..     355     569 .. 0.79
   3 ?   -2.9   0.7       1.8   5.3e+03     167     192 ..     653     683 ..     619     688 .. 0.57

  Alignments for each domain:
  == domain 1  score: -9.7 bits;  conditional E-value: 6
  Glyco_trans_2_3 195 l 195
                      +
       CTQ30469.1 190 V 190
                      0 PP

  == domain 2  score: 64.7 bits;  conditional E-value: 3.5e-21
  Glyco_trans_2_3   3 lllDaDtvlppdclreiaaela.spevaivqgpvlvmnvanwleelaalf.f.aedhgkdilvrealgr..vvpsvGsgaflrrsalqevggwd 91 
                       + D+D v+++ +l  +  ++  + e a++q+p  +    ++ ++l  ++ + +e  ++ +lv++++ +   +++ Gs+a++rr  l+e+gg+ 
       CTQ30469.1 357 SIFDCDHVPTRSFLQMTMGWFLkEKELAMMQTPHHFFSPDPFERNLGRFRkTpNEGTLFYGLVQDGNDMwdATFFCGSCAVIRRGPLDEIGGIA 450
                      588********99999999877579********99986666666666666537899999999998776554999******************** PP

  Glyco_trans_2_3  92 gdessvsEDfdmglrlqrkGyrvrfvpeslvkekspltlraalrQrkRwayGc....eleklil..........lvrllgylgsllwsa..lp. 168
                         ++v+ED + +lrl r+Gy+  ++  ++       +l a++ Qr Rwa+G           l          lv+++ y+   l++   +p 
       CTQ30469.1 451 --VETVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARGMvqifR-----LdnplfgkglkLVQRVCYANAMLHFLsgIPr 537
                      ..***************************99999999***************764431.....1333334444477777777666554411544 PP

  Glyco_trans_2_3 169 lhlallllfsllalalvlllllllaall 196
                      l ++ ++l+ ll +a+++ +++l++al+
       CTQ30469.1 538 LIFLTAPLAFLLLHAYIIYAPALMIALF 565
                      5556778888888888888888887776 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.8
  Glyco_trans_2_3 167 lplhlall....llfsllalalvl.llllll 192
                        +++++     +l+ ++++++v+ +l++l+
       CTQ30469.1 653 GIWRFMYGpeneILTVWVSIVWVFyNLIILG 683
                      3355554444446666666666664444444 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.0     6e-21   1.8e-17       2     230 .]     274     500 ..     273     500 .. 0.83

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 6e-21
  Glyco_tranf_2_3   2 rdlavlVptfneed.vlgevlesllaqeypr..vevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvl 92 
                      + + ++Vpt+ne+  v+ +++ +   ++ p   + + + +d+++++ +++a+       dv+v+++ ++  ++  +k+ ++n+al+ +k+++v 
       CTQ30469.1 274 T-VDIFVPTYNEDLnVVKNTIYASQGIDWPKdkLNIWILDDGGREAFRQFAK-------DVGVHYIARTS-HE-HAKAGNINNALKYAKGEFVS 357
                      4.779*******8878889999999888654348899999999999899886.......689***98877.44.59****************** PP

  Glyco_tranf_2_3  93 lvDdDtvvePdtlkrllqff.ltpkvgavgtpvfl...ln.rstlvsal..galefaerhlrflaarralgvltlnGsgslirrevlkelegld 179
                      ++D D v    +l+++  +f + ++ ++++tp ++   +  +++l ++    + e +  +  +    ++ +++++ Gs+ +irr  l+e++g  
       CTQ30469.1 358 IFDCDHVPTRSFLQMTMGWFlKEKELAMMQTPHHFfspDPfERNLGRFRktPN-EGTLFYGLVQDGNDMWDATFFCGSCAVIRRGPLDEIGGIA 450
                      ********************9999*********77344222334433331122.33333444444557779999******************** PP

  Glyco_tranf_2_3 180 plflltdDyelglrlrragfrtayvpgaavrevfpsslkayikqrnRwvyg 230
                          +t+D++++lrl r+g+ +ay+  +    + ++sl+a i qr Rw++g
       CTQ30469.1 451 V-ETVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARG 500
                      *.**********************999999******************986 PP

>> Cellulose_synt  Cellulose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00058       1.7       1      44 [.     275     315 ..     275     327 .. 0.86
   2 ?    1.7   0.0     0.024        70     179     285 ..     336     440 ..     321     446 .. 0.70
   3 !   48.0   3.3   2.4e-16   7.1e-13     415     654 ..     446     665 ..     443     688 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00058
  Cellulose_synt   1 vdvfvstvdplkepplvtantvlsilavdypvekvscyvsddGa 44 
                     vd+fv t +   e   v  nt+ +   +d+p +k+ +++ ddG+
      CTQ30469.1 275 VDIFVPTYN---EDLNVVKNTIYASQGIDWPKDKLNIWILDDGG 315
                     688888764...5566999************************8 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.024
  Cellulose_synt 179 ydhnkkaGamnalvrvsavlsnapfilnldcdhyinnskalreamcflldrelGkkvcyvqfpqrfdGidksdry.......anrnvvffdinlr 266
                     ++ + kaG +n  ++     + + f+  +dcdh    s  l+ +m ++l ++   +++ +q p  f   d+ +r         n+ ++f+ +   
      CTQ30469.1 336 HE-HAKAGNINNALKY----AKGEFVSIFDCDHVPTRS-FLQMTMGWFLKEK---ELAMMQTPHHFFSPDPFERNlgrfrktPNEGTLFYGLVQD 421
                     44.4567777776664....589**********76555.6889999888776...8999999999988887765311112224666777777777 PP

  Cellulose_synt 267 aldGiqGpvyvGtGcvfrr 285
                     + d      + G+ +v+rr
      CTQ30469.1 422 GNDMWDATFFCGSCAVIRR 440
                     7777777777777777766 PP

  == domain 3  score: 48.0 bits;  conditional E-value: 2.4e-16
  Cellulose_synt 415 iGwi.yGsvtedvltGfkmharGwrsvycvtkrdafkGsapinlsdrlhqvlrwalGsveiffsrnnalfagykkklkllerlaylnviiypfts 508
                     iG i   +vted  t  ++h rG+ s y    ++a  G a   ls  + q +rwa G v+if   +n+lf      lkl++r++y n++++ ++ 
      CTQ30469.1 446 IGGIaVETVTEDAHTSLRLHRRGYTSAYMRIPQAA--GLATESLSAHIGQRIRWARGMVQIF-RLDNPLFGK---GLKLVQRVCYANAMLHFLSG 534
                     55552468********************8766655..99999******************97.567899855...9******************* PP

  Cellulose_synt 509 ifllvycilpalsllsgkfivkelsnlasiyllllflslivlavlelkwsGvsleewwrneqfwvigGvsahlfavlqGllkvlaGvdisftvts 603
                     i+ l++ + p   ll   +i+     ++++++l     +i  ++ + k  G   + +w +        v a  +a    ++ ++   + +f vt+
      CTQ30469.1 535 IPRLIFLTAPLAFLLLHAYIIYAPALMIALFVL---PHMIHASLTNSKIQGKYRHSFWSEIYET----VLAWYIA-PPTFVALINPHKGKFNVTA 621
                     ********************9876655555554...4566778888888887777777653333....3333333.3556778888899999999 PP

  Cellulose_synt 604 kasddeddefadlyivkwttllippltllivnlvavvvgvsrainsayesw 654
                     k++   ++e+ d  i        p + l+++nlv+v+vg+ r ++   ++ 
      CTQ30469.1 622 KGGL-VEEEYVDWVIS------RPYIYLVLLNLVGVAVGIWRFMYGPENEI 665
                     9998.56777765444......47788999999999999999888665554 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   2.2e-16   6.6e-13      13     173 .]     335     499 ..     325     499 .. 0.87

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 2.2e-16
  Glyco_transf_21  13 vgvnpKvnnllqaleaakydllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaaleaafl.....ntlagvlqa..klsgl 98 
                       +   K  n+++al++ak +++ i D+d++ ++ +L+  ++ + + ++ ++ + ++    ++ + ++l +        + ++g++q   ++  +
       CTQ30469.1 335 SHEHAKAGNINNALKYAKGEFVSIFDCDHVPTRSFLQMTMGWFLKeKELAMMQTPHHFFSPDPFERNLGRFRKtpnegTLFYGLVQDgnDMWDA 428
                      55678********************************99998876488899999999*****99999987775454545558888888888899 PP

  Glyco_transf_21  99 gfavGksmalrreaLeaiGGfealadeLAeDyalgkllraaGlkvvlspapiaqtsvprrsslrallaRqlrWar 173
                       f +G++ ++rr  L++iGG++   +++ eD+ ++ +l+++G++ +  ++p a   +   +sl+a   + +rWar
       CTQ30469.1 429 TFFCGSCAVIRRGPLDEIGGIAV--ETVTEDAHTSLRLHRRGYTSAYMRIPQAAGLA--TESLSAHIGQRIRWAR 499
                      **********************9..*************************9554443..569***********97 PP

>> PilZ  PilZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   3.3e-16     1e-12       1     102 [.     694     790 ..     694     791 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 3.3e-16
                 CSSSS-C..EEECEEEEEEETTEE.EEEEEEEEESSEEEEEES.T-SS-TTSEEEEEEECECEEEEEEEEEEEEEECTCTTEEEEEEEEEECHHHHHHH CS
        PilZ   1 qrRkekRlevpvsipvtleadege.lkgrliDiSlgGlairlp.deelalgdrvelklpldkdqelslpgrVvrvkpeedgerlGveFldldeeqrell 97 
                 q R+++R  v++s p+ +  ++g+ ++++++D S gGl+i+++ d+++  g++ +l l+  ++qe ++p+rV rv+++    ++G++ l+l+++q+   
  CTQ30469.1 694 QVRRSHR--VEMSMPAAIAREDGHlFSCTVHDYSDGGLGIKINgDAQVLEGQNARLLLK-RGQQEYAFPVRVARVNGS----EVGLQLLPLTNQQHIDF 785
                 78*****..************9998999*******************************.******************....*************9888 PP

                 HHHHH CS
        PilZ  98 irllf 102
                 ++++f
  CTQ30469.1 786 VQCTF 790
                 88877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (872 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 6490.90
//
Query:       CTQ30470.1  [L=243]
Description: Cellulose biosynthesis protein BcsQ [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   8.6e-108  359.2   1.3   9.6e-108  359.1   1.3    1.0  1  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
    3.5e-07   30.3   0.0    5.3e-07   29.7   0.0    1.3  1  AAA_31       AAA domain
      1e-05   25.6   0.0    3.4e-05   23.9   0.0    1.8  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
  ------ inclusion threshold ------
      0.014   14.6   0.0      0.021   14.0   0.0    1.2  1  ArsA_ATPase  Anion-transporting ATPase
      0.059   12.7   0.0       0.55    9.5   0.0    2.0  1  MipZ         ATPase MipZ


Domain annotation for each model (and alignments):
>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.1   1.3  2.7e-111  9.6e-108       1     234 []       1     234 [.       1     234 [. 1.00

  Alignments for each domain:
  == domain 1  score: 359.1 bits;  conditional E-value: 2.7e-111
    CBP_BcsQ   1 mkvlalqGvRGGvGttsllaaLawalhelgesvlviDlspdnlLrlhFnvdieqregwaraeldgapwrqaaleyapgldllPfGelnveekenlqqla 99 
                 m++l lqGvRGG+G ts++aaLawal+ lgesvl+iD+spdn+Lr++Fn+di++++gwara+ldg++wr+a+l+y++++dllPfG+l++ e+en++ql+
  CTQ30470.1   1 MAILGLQGVRGGTGVTSITAALAWALQLLGESVLAIDASPDNMLRFFFNTDIHHQDGWARALLDGRDWRDAGLRYTQHIDLLPFGQLSAGERENVDQLQ 99 
                 99************************************************************************************************* PP

    CBP_BcsQ 100 ekaeallaalkelkeqyrwillDlpagasaltrellaladlvllvvepdanchvrLhqqalpaaellLiNqfeaasqlqqDllqlWlqslrrllPlvih 198
                 ++ +a+++a+++l++qyrw+llDlpag s+ltrell+l+d++l vv+pdan+h+rLhqq+lpa+  +LiN++++ sqlq+Dl+qlWl+s+ r+lP++ih
  CTQ30470.1 100 PTLGAIAEAVQQLQGQYRWLLLDLPAGYSPLTRELLTLCDRSLVVVHPDANSHIRLHQQPLPANGDILINDLRVGSQLQEDLYQLWLESQPRILPVTIH 198
                 *************************************************************************************************** PP

    CBP_BcsQ 199 rDealaEalaakqPlgeyrpdslaaeevktLanwcL 234
                 rDea+aE+laakqPlgeyr+dslaaeev tLanwcL
  CTQ30470.1 199 RDEAMAECLAAKQPLGEYRQDSLAAEEVLTLANWCL 234
                 ***********************************8 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.5e-10   5.3e-07       6     154 ..       6     152 ..       1     158 [. 0.87

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.5e-10
      AAA_31   6 ianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielvelekke 104
                 +   +GG G T  + +la al  lg+ vL +D+ p + + + ++++ ++      ++l++  + ++a   + ++++dl+p     a+   ++ +l+ + 
  CTQ30470.1   6 LQGVRGGTGVTSITAALAWALQLLGESVLAIDASPDNMLRFFFNTDIHHQ-DGWARALLDGRDWRDAGL-RYTQHIDLLPFGQLSAGERENVDQLQPTL 102
                 55679*******************************99999988766664.556666678889999988.446888****9987788888889999999 PP

      AAA_31 105 eilkellekvkdeYDyiiiDcpPsLglltenaLvasdsviipvqaeayal 154
                  ++ e++++++ +Y   ++D p   + lt+  L+  d  +++v+++a + 
  CTQ30470.1 103 GAIAEAVQQLQGQYRWLLLDLPAGYSPLTRELLTLCDRSLVVVHPDANSH 152
                 99*****************************************9987765 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   9.4e-09   3.4e-05       5      55 ..       8     139 ..       4     213 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 9.4e-09
                 ESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
        CbiA   5 stkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep................................................. 54 
                 +  GG+G T+++a+La al+  g  Vl++Da p+ n+l+ ++ + + ++                                                  
  CTQ30470.1   8 GVRGGTGVTSITAALAWALQLLGESVLAIDASPD-NMLRFFFNTDIHHQDgwaralldgrdwrdaglrytqhidllpfgqlsagerenvdqlqptlgai 105
                 668*******************************.7777677777777778999999999999999999999999999999999999999998866666 PP

                 .................................C CS
                 .................................x RF
        CbiA  55 .................................d 55 
                                                  d
  CTQ30470.1 106 aeavqqlqgqyrwllldlpagyspltrelltlcD 139
                 6666666666666666666666666555555441 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.9e-06     0.021       8      54 ..       9      55 ..       2      59 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.9e-06
                 ESTTSSHHHHHHHHHHHHHHTTS-EEEEE-STTTHHHHHHTS--BSS CS
  ArsA_ATPase  8 GKGGVGKttvsaatavklsekgkkvllistDPAhslsDsfdqklgke 54
                  +GG G t++ aa+a  l   g++vl i   P   l+  f++++ ++
   CTQ30470.1  9 VRGGTGVTSITAALAWALQLLGESVLAIDASPDNMLRFFFNTDIHHQ 55
                 58****************************************99986 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00015      0.55       9     124 ..      10     140 ..       3     156 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00015
                 STTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHHHH.........HHHHH...HHHT------EEE-SSS-HHHHTTS-HHHH.....HHHHH CS
        MipZ   9 kGGsGksttavhvavaLlkkGarvaaidldlrqrtlarylen.........raata...erkglsLplpealalseaeeaeveeeeeae.....vaele 90 
                 +GG+G + ++  +a aL   G +v aid       + r++ n          +a     + ++  L  ++++ l    + ++ e e+ +       +++
  CTQ30470.1  10 RGGTGVTSITAALAWALQLLGESVLAIDA--SPDNMLRFFFNtdihhqdgwARALLdgrDWRDAGLRYTQHIDLLPFGQLSAGERENVDqlqptLGAIA 106
                 79999999999999999999999988764..44455555544111111111111111112344556666666554444444433333330000045788 PP

                 HHHHHHHHH-SEEEEE--SS--HHHHHHHHT-SE CS
        MipZ  91 elvadleaeldfividtPGsdsalsrlahsladt 124
                 e+v++l+ ++ ++++d P   s+l+r   +l d 
  CTQ30470.1 107 EAVQQLQGQYRWLLLDLPAGYSPLTRELLTLCDR 140
                 9999999999999999999999999999888884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1870.48
//
Query:       CTQ30471.1  [L=62]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-22   79.2   1.3    1.3e-22   79.0   1.3    1.1  1  CBP_BcsR  Cellulose biosynthesis protein BcsR
  ------ inclusion threshold ------
      0.085   13.0   0.0       0.09   12.9   0.0    1.1  1  CBP_BcsO  Cellulose biosynthesis protein BcsO


Domain annotation for each model (and alignments):
>> CBP_BcsR  Cellulose biosynthesis protein BcsR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   1.3   1.5e-26   1.3e-22       1      42 []      18      59 ..      18      59 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 1.5e-26
    CBP_BcsR  1 rqdDinaLsqaFslpelrYiDIareerlasalaRWPLLaEla 42
                +q+D+ aLs+aFslp+++Y+DI+r+e+l++al+RWPLLaE+a
  CTQ30471.1 18 FQNDFLALSRAFSLPDIDYHDISRREQLNAALKRWPLLAEFA 59
                79**************************************97 PP

>> CBP_BcsO  Cellulose biosynthesis protein BcsO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     1e-05      0.09      15      44 ..      30      60 ..      19      62 .] 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
    CBP_BcsO 15 qikdidfkdlsg.dvlaselvvWPivkqllr 44
                 + did+ d+s  ++l+ +l++WP++  +++
  CTQ30471.1 30 SLPDIDYHDISRrEQLNAALKRWPLLAEFAE 60
                577*******97367899*******999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 567.55
//
Query:       CTQ30472.1  [L=554]
Description: putative protease involved in cellulose biosynthesis [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-207  689.8   0.1   2.6e-207  689.6   0.1    1.0  1  CBP_GIL   Cellulose biosynthesis GIL


Domain annotation for each model (and alignments):
>> CBP_GIL  Cellulose biosynthesis GIL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  689.6   0.1  1.5e-211  2.6e-207       4     515 .]      41     547 ..      39     547 .. 0.99

  Alignments for each domain:
  == domain 1  score: 689.6 bits;  conditional E-value: 1.5e-211
     CBP_GIL   4 vfsLgidglpdelttlesgglywvnadreedadallnqliaaqqadakvalirsaqkpkkllelnaaaasgprklplfalpekkqakallelledlera 102
                 vf+Lgi++l+de+++++ gg++w+n+dr +da +l+nq++aaq ++++va++ +++kpk++++   ++ +gp++++lf+lp+++  +al e+++dl ++
  CTQ30472.1  41 VFTLGISSLWDEVCHMPVGGVWWLNVDRYADAVSLFNQTLAAQAKNSHVAALVMGNKPKDIIS--LDHIHGPDNIALFTLPNRP--QALEEIHRDLVCS 135
                 699************************************************************..5556***************..************* PP

     CBP_GIL 103 laprnrllilleaaelwekldeaelarwlkklarwlakrrctllllssgsevdalrsklqeehrvlaGlAsLrsqqdellydvafWrnekgvladqals 201
                 l+p n+l+ill+a+++w+++++++l  w++k++rw++++rc++l ++s++e+d++ + l +e+r+l+GlAs+r+q+d++ +d+a+W ++kg++a+q+l+
  CTQ30472.1 136 LEPGNYLFILLCAENAWQNINNEKLCAWVEKTSRWAQYHRCAFLAINSAQEIDRQLTPLLREYRSLSGLASIRYQGDRHIFDIAWWGSDKGISAQQQLM 234
                 *************************************************************************************************** PP

     CBP_GIL 202 LrfdegrlslaeeaeqnspqlasDekrvlasravlegepplsenWelfddnealvaaarqaqaATvvlslsqsaqieaLAraihtLRrqrGsaLKIvVr 300
                 +++d+++++la++ae+++ q++sDek++l++ +vleg+pplse+W+lfd+n+++++a+r+aqaAT+++s++q++qie+L r+ihtLRrqrG+aLKI+Vr
  CTQ30472.1 235 VQHDDAGWRLAQDAETSV-QPRSDEKAILSHVRVLEGAPPLSEYWTLFDTNDEVFNAGRTAQAATILFSITQNTQIEQLGRYIHTLRRQRGTALKIIVR 332
                 ***************999.******************************************************************************** PP

     CBP_GIL 301 EkgesLRasdErLlLalGaNlvvpreaplsrlltllesvqgqvfsrhvpadyeallaaaqplklrGYlppaeFceaVrallersllpedlkgvLVaLrl 399
                 E+++sLRa+dErLlL+ Ga+lv+p +a+lsr+ltl+esvq+q+fsrh+p+d+++ll+++qplklrGY+++++FceaV+++++++llp d+kgv+VaLr+
  CTQ30472.1 333 EQTPSLRATDERLLLSSGASLVIPSSASLSRCLTLIESVQNQKFSRHIPEDFATLLTWSQPLKLRGYQKWDAFCEAVHNVMTNTLLPPDSKGVMVALRP 431
                 *************************************************************************************************** PP

     CBP_GIL 400 lpglahedaLtlckprRaGDlvTadanrlylFLfaCrlnDldaALkriFrlPveelfsnrlvwledksIaaeleqlralapaaeaaplpaaaaaapasa 498
                 +pgl++e+aLtlckp+R+GD++T+++nrl+lFL++Cr+nDld+AL++iF+lP++++fsnr+vw+edk+I +e+  +r++++a++++plp++ +++++ +
  CTQ30472.1 432 APGLRVEQALTLCKPNRMGDIMTIGNNRLVLFLSFCRINDLDTALNHIFPLPTGDIFSNRMVWFEDKQILSEIVIMRGVESARWNTPLPLSVGKNETIN 530
                 *************************************************************************************************** PP

     CBP_GIL 499 aeaeeapprrrpepitl 515
                 a+++ +++rr pep++l
  CTQ30472.1 531 ATHDGRHWRRYPEPHRL 547
                 **************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 4652.53
//
Query:       CTQ30473.1  [L=65]
Description: hypothetical protein CH1034_350169 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-26   92.4   1.5    1.5e-26   92.2   1.5    1.0  1  CBP_BcsF  Cellulose biosynthesis protein BcsF
  ------ inclusion threshold ------
       0.17   12.4   0.0       0.22   12.0   0.0    1.2  1  DUF2367   Uncharacterized conserved protein (DUF2367)


Domain annotation for each model (and alignments):
>> CBP_BcsF  Cellulose biosynthesis protein BcsF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   1.5   1.7e-30   1.5e-26       1      58 [.       2      59 ..       2      61 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.2 bits;  conditional E-value: 1.7e-30
    CBP_BcsF  1 MnlsDivqiiilcaLiflpLgyllarllrrlsdtlrlrLlpPRylKpaGvlrRnakkk 58
                M+l Di+q+++lcaL+f+pLgyl ++  rr++ tlrl++++PRy+KpaGvlrR +++k
  CTQ30473.1  2 MSLADILQLVVLCALLFFPLGYLTRHYQRRIRTTLRLMFFKPRYVKPAGVLRRGTTVK 59
                9******************************************************997 PP

>> DUF2367  Uncharacterized conserved protein (DUF2367)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.5e-05      0.22      73      88 ..      10      25 ..       3      35 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.5e-05
     DUF2367 73 lGilcaifffPlGilc 88
                l +lca++ffPlG l 
  CTQ30473.1 10 LVVLCALLFFPLGYLT 25
                679**********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 530.00
//
Query:       CTQ30474.1  [L=559]
Description: putative endoglucanase involved in cellulose biosynthesis [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.5e-236  783.5   0.0   8.4e-236  783.4   0.0    1.0  1  CBP_BcsG  Cellulose biosynthesis protein BcsG


Domain annotation for each model (and alignments):
>> CBP_BcsG  Cellulose biosynthesis protein BcsG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  783.4   0.0  4.7e-240  8.4e-236       1     518 []      23     554 ..      23     554 .. 0.98

  Alignments for each domain:
  == domain 1  score: 783.4 bits;  conditional E-value: 4.7e-240
    CBP_BcsG   1 WnlYFllklaLllagylkfhlllnllflallllplrskllrklrqliaipvglaLlyhdswlPplerllsqasqlagfslsYlvellgrfinlkmllal 99 
                 Wn+YFl+k+aLl+agyl+fh++lnl+fla+ll+p+++++l+++r++iaip+g+aL++hd+wlP++e+++sq sq+agfs+sY+++l+ +fin++m++a+
  CTQ30474.1  23 WNFYFLVKFALLWAGYLNFHPMLNLVFLAFLLVPIPREKLHRIRHWIAIPLGFALFWHDTWLPGPESIFSQGSQIAGFSASYIWDLIVHFINWSMVGAF 121
                 *************************************************************************************************** PP

    CBP_BcsG 100 ivllivylllsqwirvttlvllalialsvle.................ksaksaaaaaaakaaeaeaakaaaaaaqaaeansanldealeaFyekekkr 181
                 +vll+++l++sqw+rvt++v +++++l+v++                 +++++a + a+a+a +a++  ++++++q+++++sanl+++l+aFy+ e+kr
  CTQ30474.1 122 FVLLVLWLFISQWLRVTVFVSAMIVWLAVSPllpaftlwpagqpttaaATTAQANTGANAAAGAASSPANSDIPPQTEPPTSANLTNWLNAFYAAEQKR 220
                 ******************************************9987764455555666666777778888999************************** PP

    CBP_BcsG 182 kvefpaklaadaqpFdilvlnicSlswdDleaaglenhpllkrfdilfdnFnsatsysgpAairlLrasCGQeshkeLykpaeeqCylfenLaklGfke 280
                 k+ fp++l++daqpFd+lv+nicSlsw+D+eaagl++hpl+k+fdi+f+nFnsatsysgpAa+rlLrasCGQ sh++Ly+p+ ++CylfenLaklGf++
  CTQ30474.1 221 KTPFPDQLPTDAQPFDLLVINICSLSWSDIEAAGLMDHPLWKHFDIVFKNFNSATSYSGPAAVRLLRASCGQLSHTNLYQPSGADCYLFENLAKLGFNQ 319
                 *************************************************************************************************** PP

    CBP_BcsG 281 ellldhdGkfdnflkelrekgglkaplldqeklavalkafdgspiyddldvLkrwlkqreasdkkrvalfyntisLhDGnrlagskklsslasYkprak 379
                 +l+l h+G f++flkelr+ gg+++pl+dq++l+v+l+afdgsp+y+dl+vL+rwlk++eas++ r+a+fynt++LhDGn+++g++k+   a+Yk ra+
  CTQ30474.1 320 QLMLGHNGLFGDFLKELRSLGGMQSPLMDQTGLPVSLQAFDGSPVYEDLAVLNRWLKTEEASSNPRNATFYNTLPLHDGNHFPGQSKT---ADYKVRAQ 415
                 *************************************************************************************999...******** PP

    CBP_BcsG 380 kllddldkfideleksgrkvvvvlvPehGaalrgdkmqiaglreiPspsithvpvgvkliglkaekegkpveitqptSylalselvsrlleknifaeee 478
                 kl+ddld+f++eleksgrkv+vv+vPehG+al+gdkmq++glr+iPspsit+vp++vk++g+ka++eg+p+ i+qp+Syla+selv r+l++++f+e++
  CTQ30474.1 416 KLFDDLDNFFTELEKSGRKVMVVVVPEHGGALKGDKMQVSGLRDIPSPSITNVPTAVKFFGMKAPHEGAPIIIDQPSSYLAVSELVVRALDGKMFSEDS 514
                 *************************************************************************************************** PP

    CBP_BcsG 479 vdlaelvkdLpqtavvsenenavvlkykgkeyvklkdgdw 518
                 v+++++v++Lpq+a+vsen+na+v++y+gk+yv+l++g+w
  CTQ30474.1 515 VNWQQYVANLPQSAAVSENANAIVIQYQGKPYVQLNGGSW 554
                 ***************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4103.85
//
Query:       CTQ30475.1  [L=333]
Description: Endoglucanase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     1e-102  343.5   6.1   1.2e-102  343.3   6.1    1.0  1  Glyco_hydro_8  Glycosyl hydrolases family 8


Domain annotation for each model (and alignments):
>> Glyco_hydro_8  Glycosyl hydrolases family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.3   6.1  6.5e-107  1.2e-102      13     341 ..      12     330 ..       1     331 [. 0.95

  Alignments for each domain:
  == domain 1  score: 343.3 bits;  conditional E-value: 6.5e-107
                    XXXXXXXXXX---H.HHHHHHHHHB-TTS-B-BTTSTT-BEEHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTTTS---SEEEE-TTS-EEEE CS
  Glyco_hydro_8  13 llaafadsaaianaleWeqfkskyitseGRvqdtgnanksttsEGqgyglllavaagdraaFdnlyrwtkvnLaqtkekLfsWrfdksenskvkdd 108
                    +++++ ++ a a + +We +k++++ ++GR++dt+n+n+s+t EGqg+++llava +dr aFd+l++wt + L++ +++Lf+Wr+++ +  ++ d 
     CTQ30475.1  12 TTVVMLVPRAWADT-AWERYKARFMMPDGRIIDTANGNVSHT-EGQGFAMLLAVANNDRPAFDKLWQWTDNTLRNKSNGLFYWRYNPVAPDPIAD- 104
                    45555556666654.9**************************.****************************************************. PP

                    -S-BHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHEEEETTE.EEE-SSSSSSBESSEEEE-TTSS-.HHHHHHHGGG-TT.HHHHHHHH CS
  Glyco_hydro_8 109 knnAsDgDvliAlsLlkAgkkwkeqrynyitdalakiiavenvmveaGtvvllpGavgfakndsvilNpSYfa.PalaqfadrtgaprWrqvaeds 203
                    knnAsDgD liA++Ll+A k+w+++ry  ++da+  +   + v+++aG+ v+lpG  gf+ nd + lNpSYf+ Pa++ fa+rt+   Wr++  d+
     CTQ30475.1 105 KNNASDGDTLIAWALLRAQKQWQDKRYAIASDAITAALLKSTVVTFAGRQVMLPGVKGFNLNDHLNLNPSYFIfPAWRAFAERTHLTAWRTLQSDG 200
                    ************************************************************************************************ PP

                    HHHHHHT-T..TS---SSEEEETTTEEE-S--TT-EESTTTHHHHHHHHTS-TTSHHHHHHHHHTHHHHHHHHHHSS-ESEEETTT--EESE-.-H CS
  Glyco_hydro_8 204 lrlvdearfgqkglspDWvavnadkalalaaefplrasydaiRvalylswyddadkakadalsnFkkiayanikdgytpekvdvasgktatynaaa 299
                    + l++++  g+  l+ DWva+ ad+ + +a e+p+r+s+daiR++lylsw+d     ++ +l+++k   ++ ++++ tp++++v++++ a++ +a+
     CTQ30475.1 201 QALLGQMGWGKSHLPSDWVALRADGKMLPAKEWPPRMSFDAIRIPLYLSWAD----PHSALLAPWKA-WMQSYPRLQTPAWINVSTNEVAPWYMAG 291
                    ****************************************************....999*******9.999************************* PP

                    HHHHHHHHH--SHHHHHHHHT---TT-HHHHHHHHHHHHHHT CS
  Glyco_hydro_8 300 gllavadltlanriageladlkdasedYysaaLrllvllara 341
                    gllav+dltl++   +e ++++d   dYysa+L+llv la++
     CTQ30475.1 292 GLLAVRDLTLGE--PQEAPQIDDKD-DYYSASLKLLVWLAKQ 330
                    ************..78899999986.************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2589.66
//
Query:       CTQ30476.1  [L=158]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-10   41.0   0.1      2e-10   40.7   0.1    1.1  1  Cellsynth_D  Cellulose synthase subunit D


Domain annotation for each model (and alignments):
>> Cellsynth_D  Cellulose synthase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.1   1.1e-14     2e-10      23     113 ..      45     135 ..      26     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.1e-14
  Cellsynth_D  23 ellrevgrgmatrlqpplcqtvdklqielnallalinwgtvtlellsedqalrivheelpqv.gsagepa.gtwlapvleglygrwvtsqaga 113
                   +lr++g  +a     p  +tv +l+ ++n ll+   wg+vt+++  e + lr+ h+ lp     ag       ++ +legly rw+ sq g+
   CTQ30476.1  45 PFLRQMGASLAETHPLPASETVGDLEANINRLLTHFHWGVVTIDVG-E-DGLRLRHQALPVSrDEAGRVRwCNAFCAILEGLYSRWLQSQGGS 135
                  5799*******99999***************************974.4.579********75245666541345688*************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1323.35
//
Query:       CTQ30477.1  [L=1350]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.7e-139  462.8  22.6   6.7e-139  462.8  22.6    2.2  2  BCSC_C           Cellulose synthase operon protein C C-termin
    5.3e-25   87.7  73.7    3.3e-06   27.5   0.2   12.3 14  TPR_19           Tetratricopeptide repeat
    4.1e-13   48.9  74.0    7.7e-06   26.3   0.7   14.2 14  TPR_14           Tetratricopeptide repeat
      4e-09   37.0  77.8     0.0022   18.6   4.4   11.0 10  TPR_16           Tetratricopeptide repeat
      4e-07   29.6  32.6       0.15   12.2   0.4    9.9  8  TPR_2            Tetratricopeptide repeat
    1.1e-06   28.7  22.3        1.5    9.1   0.0    7.5  7  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    1.9e-06   27.9  25.1      0.073   13.5   0.0    9.6 10  TPR_17           Tetratricopeptide repeat
    2.5e-06   27.0  21.1      0.096   12.4   0.1    6.8  6  TPR_11           TPR repeat
    4.1e-05   23.4  13.2        1.9    8.9   0.4    7.5  5  TPR_8            Tetratricopeptide repeat
     0.0019   18.4  19.8     0.0056   16.8  19.8    1.9  1  OMP_b-brl        Outer membrane protein beta-barrel domain
     0.0021   18.0   3.1        1.7    8.5   0.0    4.1  4  DUF4919          Domain of unknown function (DUF4919)
      0.006   16.9  46.3       0.66   10.3   0.0    9.7 10  TPR_20           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.013   15.3  16.0       0.26   11.2   0.6    6.7  7  TPR_1            Tetratricopeptide repeat
      0.046   13.8   1.2      0.095   12.8   0.3    2.1  1  Opacity          Opacity family porin protein
      0.053   13.7  38.3       0.02   15.0   2.7    7.9  7  TPR_9            Tetratricopeptide repeat
        0.1   12.0   0.0       0.25   10.7   0.0    1.6  1  TAF1_subA        TAF RNA Polymerase I subunit A
       0.19   12.4   0.1       0.19   12.4   0.1   13.3 12  TPR_4            Tetratricopeptide repeat
       0.72   10.6   0.0       0.72   10.6   0.0   13.9 14  TPR_6            Tetratricopeptide repeat
          5    7.6  24.0        2.5    8.6   2.1    5.0  4  Alkyl_sulf_dimr  Alkyl sulfatase dimerisation


Domain annotation for each model (and alignments):
>> BCSC_C  Cellulose synthase operon protein C C-terminus (BCSC_C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.5       2.1     2e+03     252     329 ..     242     324 ..     236     329 .. 0.62
   2 !  462.8  22.6  7.1e-142  6.7e-139       1     338 [.     926    1347 ..     926    1348 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.1
      BCSC_C 252 vgyqsykedksayfPtdpdlqaalevaagtakeavyagssksGigyslraaaeyrlnkq.....lvvGgqlsidtagdYaess 329
                 +g ++y+   +++ P+d+++q+   ++++ +++    ++ +sG    ++ ++e  l+ +        G+   ++++gdY+  s
  CTQ30477.1 242 AGDEQYYDTWMQRHPQDSEVQNYFRERRSGQARGQGYANLNSGNTAAAKQQFEEVLQTNpqdadALAGMGYIAQRSGDYQAAS 324
                 56677788888999999999999884444444444444555555566666666555432112225678888888888887665 PP

  == domain 2  score: 462.8 bits;  conditional E-value: 7.1e-142
      BCSC_C    1 sklteaeap.leasvpvkdgrlsvrvtpvsldaGtlaasgsanarfGtgalsqaesvaaa..................................... 59  
                  sklte+++p +++s p++d+r+ ++vtpvsl+aGt  asg+a++r+G ++l++a s++ +                                     
  CTQ30477.1  926 SKLTELRTPlTWSSSPFGDSRFDFTVTPVSLNAGT--ASGDAWRRYGANPLANAVSNMVStatseqaaiasmteaertayfasnpgaealsglgtln 1020
                  79*********************************..9*************99999888899*********************************** PP

      BCSC_C   60 .............................................agsqkasGvelalglegdswkadiGtTPlGfdvsnvvGgvkwspklgdlg.l 110 
                                                               ++sqka+Gvelal+l+gd++++diG+TPlG+d+++vvGgvkwspkl+++  l
  CTQ30477.1 1021 aadfnpttssgmenlaklgsydagqvasylssssrkpnvdqtsgsTDSQKANGVELALALSGDDYRVDIGSTPLGQDLNTVVGGVKWSPKLTNYLsL 1117
                  ************************************************************************************************* PP

      BCSC_C  111 tltaeRravtdSlLSYaGarDpvtGkkWGgVtknggslslsyddgdagvyaelgaesltGenVasNtsveanaGvylrlikeddrelkvGlnlsymd 207 
                   lt+eRr++tdSlLSY+G +D+++Gk+WG+Vtkngg+l+lsyddgdag+y+++g++s++G+nVasNts++anaGvylr+++++ r+l++Gl++symd
  CTQ30477.1 1118 ILTGERRSLTDSLLSYVGLKDAYSGKTWGQVTKNGGTLQLSYDDGDAGFYVGGGGYSYLGQNVASNTSINANAGVYLRPYHDEYRQLQAGLSMSYMD 1214
                  ************************************************************************************************* PP

      BCSC_C  208 ydknlsyftyGqGGYfSPqrYvsvslpveytqrydnwsyklsgsvgyqsykedksayfPtdpdlqaale..vaagtakeavyagssksGigyslraa 302 
                  y+knlsyftyGqGGYfSPq+Yvsvslpv++t++ydnw++kl+gsvgyqsy++dksayfPt++++q++le  v++g+akea+y+++sksGigy+lra 
  CTQ30477.1 1215 YSKNLSYFTYGQGGYFSPQNYVSVSLPVSLTEKYDNWTMKLGGSVGYQSYSQDKSAYFPTNSEWQQTLEtaVSNGFAKEAYYSATSKSGIGYTLRAG 1311
                  ************************************************************************************************* PP

      BCSC_C  303 aeyrlnkqlvvGgqlsidtagdYaessallylrYlf 338 
                  a+y++nkq+++Ggq+++dt+gdY+es+a ly+rY++
  CTQ30477.1 1312 ADYKVNKQMTLGGQIGYDTFGDYNESTAGLYIRYML 1347
                  **********************************97 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   3.3    0.0051       4.8      10      63 ..      60     113 ..      58     118 .. 0.90
   2 ?   -1.3   0.0       3.4   3.3e+03       7      35 ..     175     203 ..     174     210 .. 0.73
   3 ?   -0.7   0.0       2.2     2e+03      11      39 ..     214     239 ..     205     263 .. 0.81
   4 !   22.9   4.5   9.7e-08   9.1e-05       4      57 ..     283     336 ..     280     346 .. 0.92
   5 ?    3.1   7.9      0.14   1.4e+02       5      57 ..     318     382 ..     317     394 .. 0.67
   6 !   12.7   7.8   0.00014      0.13       1      59 [.     360     419 ..     348     421 .. 0.75
   7 !   23.5   4.2   6.4e-08   6.1e-05       4      57 ..     398     451 ..     395     459 .. 0.92
   8 !   27.5   0.2   3.5e-09   3.3e-06       5      57 ..     477     529 ..     474     538 .. 0.87
   9 ?    6.8   0.4      0.01       9.5      27      67 ..     532     571 ..     521     572 .. 0.76
  10 ?    4.0   0.4     0.076        72      25      59 ..     574     608 ..     573     620 .. 0.77
  11 ?    4.7   0.1     0.048        45       2      46 ..     585     629 ..     584     633 .. 0.89
  12 !   20.6   1.3   5.1e-07   0.00049       1      57 [.     695     751 ..     695     757 .. 0.87
  13 !    8.2   0.2    0.0037       3.5      13      48 ..     741     776 ..     735     786 .. 0.84
  14 !    8.2   1.6    0.0037       3.5       1      49 [.     763     809 ..     763     814 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0051
      TPR_19  10 AlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryas 63 
                 A++ l+++l+ d++n  a++l+A    + g+ ++A +  ++l +++pd++ +++
  CTQ30477.1  60 AMESLQKVLSVDANNTQALYLMALWSQQGGDMQAAAQWRARLAKAAPDSPGLQD 113
                 8899****************888777777*******************887665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.4
      TPR_19   7 yaeAlalleqalqedpknaearllLAeal 35 
                 y +A++ l+q  ++ p+  + r +L +al
  CTQ30477.1 175 YPQAISELRQYVAQHPQENAPRVALGKAL 203
                 56788888887788888777777666665 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.2
      TPR_19  11 lalleqalqedpknaearllLAeallalg 39 
                 +alle +   + +n ea  +L +all lg
  CTQ30477.1 214 IALLEPM---ASGNKEADSGLRQALLWLG 239
                 7888888...8999999999999999887 PP

  == domain 4  score: 22.9 bits;  conditional E-value: 9.7e-08
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 +g+ a+A + +e++lq +p++a+a++++  +   +g++++A + L+++ +   d
  CTQ30477.1 283 SGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGD 336
                 799********************************************9998887 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.14
      TPR_19   5 gdyaeAlalleqalqe..........dpknaearllLAeal..lalgqldeAealLdalpeedpd 57 
                 gdy++A ++l++a +            + +a    +LA+a+  +++g++ +A al ++l ++   
  CTQ30477.1 318 GDYQAASQYLSRAADLggdasatrrqQAADALFYGQLAQAQqaYKQGNISQALALSAPLAQQSGA 382
                 9***********99774444443333333666666886665337788888888888777777665 PP

  == domain 6  score: 12.7 bits;  conditional E-value: 0.00014
      TPR_19   1 llaegdyaeAlalleqalqedpk.naearllLAeallalgqldeAealLdalpeedpdda 59 
                 ++++g+  +Alal + + q++    a a+l  A++l  +++l +Ae++L  l+++dp++a
  CTQ30477.1 360 AYKQGNISQALALSAPLAQQSGAqGASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNA 419
                 35666666666666666666666356666666*************************965 PP

  == domain 7  score: 23.5 bits;  conditional E-value: 6.4e-08
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 ++d+ +A + l+++l +dp+na+ar +L  +l +++  +eA+a+L++lp++ ++
  CTQ30477.1 398 NKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAMLQTLPQSLRQ 451
                 789**********************************************99887 PP

  == domain 8  score: 27.5 bits;  conditional E-value: 3.5e-09
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 g++a A+a l++  + +p+++++rl+LA++l ++g+  eA  l++a+ +  + 
  CTQ30477.1 477 GNPAGAIATLREGVARYPDDPWLRLDLARLLQKSGNGSEASSLMSAAYRPGAS 529
                 899***************************************99987665555 PP

  == domain 9  score: 6.8 bits;  conditional E-value: 0.01
      TPR_19  27 arllLAeallalgqldeAealLdalpeedpddaryasLlAk 67 
                 a+++ A    ++g +++A+ lL+++p   +  +++++L+++
  CTQ30477.1 532 ALYAAALFASENGAWQQAQTLLARIPGGSQT-SDMRDLRQR 571
                 334455556667**************99999.999988765 PP

  == domain 10  score: 4.0 bits;  conditional E-value: 0.076
      TPR_19  25 aearllLAeallalgqldeAealLdalpeedpdda 59 
                  +++l  Ae +la+g++ +A ++L a     p+ +
  CTQ30477.1 574 YNLQLVTAENYLAQGNTIAASNTLRAMASTPPKAP 608
                 56777779****************99888877754 PP

  == domain 11  score: 4.7 bits;  conditional E-value: 0.048
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46 
                 la+g+  +A + l+++ +  pk ++ +  LA++l ++g+l+ A  
  CTQ30477.1 585 LAQGNTIAASNTLRAMASTPPKAPADAGKLARLLAESGDLTTAVS 629
                 89999999*******99999999999999**********999876 PP

  == domain 12  score: 20.6 bits;  conditional E-value: 5.1e-07
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 l ++g+ya+A + l +a+q dp+n ++  ++A+++ + +  +eA  + d l+  d  
  CTQ30477.1 695 LREQGNYAAAYDKLIRAMQSDPQNTDLMFAMARLYQSGKMNKEAGVVYDYLMTRDTP 751
                 679********************************9999999998888777766655 PP

  == domain 13  score: 8.2 bits;  conditional E-value: 0.0037
      TPR_19  13 lleqalqedpknaearllLAeallalgqldeAealL 48 
                  + ++++ d  n++ar++ +++ l++g+ d Ae+l 
  CTQ30477.1 741 VYDYLMTRDTPNQDARAGAIDVALSAGNNDRAEQLA 776
                 57777888889**********************985 PP

  == domain 14  score: 8.2 bits;  conditional E-value: 0.0037
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLd 49 
                 +l +g+ ++A +l   + q+  ++++ +llLA++  a+g+ ++A+  L 
  CTQ30477.1 763 ALSAGNNDRAEQLAGGLRQD--NSPDRLLLLARVAEAQGHHQQAMTYLR 809
                 57899999999999998666..568888889*************99886 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.3     0.017        16       3      42 ..      40      82 ..      38      84 .. 0.84
   2 ?   -0.6   0.7       3.6   3.4e+03       8      37 ..      82     111 ..      77     113 .. 0.63
   3 ?    2.4   0.1      0.38   3.6e+02      18      43 ..     176     201 ..     160     224 .. 0.84
   4 !   16.4   0.0   1.2e-05     0.012       8      43 ..     277     312 ..     271     313 .. 0.84
   5 !    8.3   2.1    0.0048       4.5       2      41 ..     305     344 ..     304     348 .. 0.88
   6 ?   -1.5   0.2       7.2   6.8e+03       4      22 ..     353     371 ..     349     378 .. 0.76
   7 !   12.9   0.3   0.00016      0.15       3      41 ..     387     425 ..     385     429 .. 0.91
   8 !   26.3   0.7   8.2e-09   7.7e-06       3      44 .]     465     506 ..     463     506 .. 0.96
   9 ?    1.6   0.4      0.71   6.7e+02       3      27 ..     532     556 ..     531     558 .. 0.89
  10 ?    6.3   0.2     0.021        20       4      44 .]     577     617 ..     575     620 .. 0.82
  11 ?    1.8   0.1      0.62   5.9e+02       6      24 ..     613     631 ..     608     633 .. 0.87
  12 ?    6.1   0.5     0.025        24      10      44 .]     694     728 ..     692     728 .. 0.92
  13 ?    0.5   0.1       1.6   1.5e+03       3      24 ..     755     776 ..     754     787 .. 0.81
  14 !   10.0   0.7    0.0014       1.4       4      27 ..     788     811 ..     785     815 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.017
      TPR_14  3 allal.aea.llalGdpde.AiallrralalaPddaeawllla 42
                al+al a+a +++   +de A++ l+++l+ + ++ +a++l+a
  CTQ30477.1 40 ALQALfAQAnYWHEKSHDElAMESLQKVLSVDANNTQALYLMA 82
                55555467678999999988****************9999998 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 3.6
      TPR_14   8 aeallalGdpdeAiallrralalaPddaea 37 
                 a    + Gd ++A++   r+ ++aPd++ +
  CTQ30477.1  82 ALWSQQGGDMQAAAQWRARLAKAAPDSPGL 111
                 333345577777777777777789999865 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.38
      TPR_14  18 deAiallrralalaPddaeawlllaq 43 
                  +Ai  lr+++a++P++ + + +l++
  CTQ30477.1 176 PQAISELRQYVAQHPQENAPRVALGK 201
                 579999*********98777777665 PP

  == domain 4  score: 16.4 bits;  conditional E-value: 1.2e-05
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 + a l++G++++A + ++++l+++P+da+a+  ++ 
  CTQ30477.1 277 GYANLNSGNTAAAKQQFEEVLQTNPQDADALAGMGY 312
                 4455789***********************988875 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.0048
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 +al+ ++ +  ++Gd+++A ++l ra +l+ d  +++++ 
  CTQ30477.1 305 DALAGMGYIAQRSGDYQAASQYLSRAADLGGDASATRRQQ 344
                 6888999999****************99999998888765 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 7.2
      TPR_14   4 llalaeallalGdpdeAia 22 
                 +la a+  + +G+  +A+a
  CTQ30477.1 353 QLAQAQQAYKQGNISQALA 371
                 4666777778888888876 PP

  == domain 7  score: 12.9 bits;  conditional E-value: 0.00016
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 a l +a++l+++ d+ +A++ lr +l ++P++a+a+  l
  CTQ30477.1 387 AKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENL 425
                 56789******************************9765 PP

  == domain 8  score: 26.3 bits;  conditional E-value: 8.2e-09
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 al++ a+a    G+p++Aia lr+ +a++Pdd++++l la+l
  CTQ30477.1 465 ALRRQAQAQVSGGNPAGAIATLREGVARYPDDPWLRLDLARL 506
                 89999***********************************97 PP

  == domain 9  score: 1.6 bits;  conditional E-value: 0.71
      TPR_14   3 allalaeallalGdpdeAiallrra 27 
                 al+a+a +  ++G +++A +ll r+
  CTQ30477.1 532 ALYAAALFASENGAWQQAQTLLARI 556
                 789999999999*********9985 PP

  == domain 10  score: 6.3 bits;  conditional E-value: 0.021
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 +l  ae +la+G++ +A + lr++ ++ P+ ++    la+l
  CTQ30477.1 577 QLVTAENYLAQGNTIAASNTLRAMASTPPKAPADAGKLARL 617
                 55567789******************988888777777764 PP

  == domain 11  score: 1.8 bits;  conditional E-value: 0.62
      TPR_14   6 alaeallalGdpdeAiall 24 
                 +la++l+++Gd+ +A+ l 
  CTQ30477.1 613 KLARLLAESGDLTTAVSLV 631
                 69*************9776 PP

  == domain 12  score: 6.1 bits;  conditional E-value: 0.025
      TPR_14  10 allalGdpdeAiallrralalaPddaeawlllaql 44 
                  l+++G++++A + l ra + +P++ ++ +++a+l
  CTQ30477.1 694 RLREQGNYAAAYDKLIRAMQSDPQNTDLMFAMARL 728
                 6899**************9**************97 PP

  == domain 13  score: 0.5 bits;  conditional E-value: 1.6
      TPR_14   3 allalaeallalGdpdeAiall 24 
                 a++ + ++ l +G+ d+A++l+
  CTQ30477.1 755 ARAGAIDVALSAGNNDRAEQLA 776
                 5667788999*********986 PP

  == domain 14  score: 10.0 bits;  conditional E-value: 0.0014
      TPR_14   4 llalaeallalGdpdeAiallrra 27 
                 ll+la++ +a+G +++A+++lr a
  CTQ30477.1 788 LLLLARVAEAQGHHQQAMTYLRSA 811
                 799*******************87 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   1.7     0.025        24      16      68 .]      60     109 ..      58     109 .. 0.78
   2 ?    2.8   0.3      0.21     2e+02      13      44 ..     175     203 ..     161     218 .. 0.77
   3 !   18.6   4.4   2.3e-06    0.0022       3      67 ..     276     337 ..     274     338 .. 0.94
   4 !   16.9   6.7   8.2e-06    0.0077       1      67 [.     354     418 ..     354     421 .. 0.89
   5 ?    5.9   0.7     0.021        20      15      53 ..     403     438 ..     403     448 .. 0.87
   6 !    9.1   1.8    0.0021         2      32      68 .]     456     497 ..     424     497 .. 0.74
   7 ?    4.8   2.6     0.049        46       1      54 [.     501     550 ..     501     561 .. 0.87
   8 ?    3.1   0.1      0.16   1.6e+02       5      58 ..     582     632 ..     578     633 .. 0.74
   9 ?    4.3   0.2     0.067        63       2      43 ..     690     728 ..     689     743 .. 0.84
  10 !   11.1   3.7   0.00051      0.48       5      61 ..     761     812 ..     757     815 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.025
      TPR_16  16 AaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 A + l+ +l  d     + +Al+l ++   + g++++Aa++ +++++aapd+p
  CTQ30477.1  60 AMESLQKVLSVD---ANNTQALYLMALWSQQGGDMQAAAQWRARLAKAAPDSP 109
                 556666666666...66677777777766678*******************98 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.21
      TPR_16  13 yddAaaaleaalkrdpssPdaaeAllllgdaa 44 
                 y++A+  l+++++++   P+  + + +lg a+
  CTQ30477.1 175 YPQAISELRQYVAQH---PQENAPRVALGKAL 203
                 899************...98544444444443 PP

  == domain 3  score: 18.6 bits;  conditional E-value: 2.3e-06
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 +++a l++g+ ++A  ++e++l  +   P++a+Al + g +a r g++++A +++ +a++ + da
  CTQ30477.1 276 QGYANLNSGNTAAAKQQFEEVLQTN---PQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDA 337
                 788889*******************...******************************9988776 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 8.2e-06
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 la+a+ a+++g+  +A+ al a l+++ s  + a A l+++d++ ++++l+ A++ +r++l  +p++
  CTQ30477.1 354 LAQAQQAYKQGNISQAL-ALSAPLAQQ-SGAQGASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQN 418
                 799**************.677888888.55779**************************99777776 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.021
      TPR_16  15 dAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53 
                 +A+  l+ +l +d   P++a+A+ +l  ++ +q+  aeA
  CTQ30477.1 403 QAEQTLRSLLNDD---PQNAAARENLYYVLREQNKSAEA 438
                 6888899999999...*****************999988 PP

  == domain 6  score: 9.1 bits;  conditional E-value: 0.0021
      TPR_16  32 d.....aaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 +       +Al   ++a    g+ a+A+a +r+ ++ +pd+p
  CTQ30477.1 456 RvvagmPGDALRRQAQAQVSGGNPAGAIATLREGVARYPDDP 497
                 4566667799999**************************998 PP

  == domain 7  score: 4.8 bits;  conditional E-value: 0.049
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54 
                 l+lar++ ++g+  +A  +  aa + +        Al++ ++ a ++g ++ A 
  CTQ30477.1 501 LDLARLLQKSGNGSEASSLMSAAYRPG---A-SNSALYAAALFASENGAWQQAQ 550
                 799********************9999...3.7889999999999999999885 PP

  == domain 8  score: 3.1 bits;  conditional E-value: 0.16
      TPR_16   5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                   +l++g+  +A + l +a ++   +P a++ +  l++++++ g+l+ A+ l+r
  CTQ30477.1 582 ENYLAQGNTIAASNTL-RAMAST--PPKAPADAGKLARLLAESGDLTTAVSLVR 632
                 5677777777777666.334444..49999999999999999999999987765 PP

  == domain 9  score: 4.3 bits;  conditional E-value: 0.067
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgda 43 
                 ++a+ ++++g+y++A   l +a  +d   P++ + +++ +++
  CTQ30477.1 690 NEADRLREQGNYAAAYDKLIRAMQSD---PQNTDLMFAMARL 728
                 68999*********999998888888...8888887776655 PP

  == domain 10  score: 11.1 bits;  conditional E-value: 0.00051
      TPR_16   5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 + al ag+ d+A+ ++  ++ ++      ++ llll+++a +qg ++ A  ++r+a 
  CTQ30477.1 761 DVALSAGNNDRAEQLAGGLRQDN-----SPDRLLLLARVAEAQGHHQQAMTYLRSAR 812
                 7899************9999999.....777**********************9986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.28   2.7e+02       3      34 .]      43      74 ..      41      74 .. 0.91
   2 !   11.5   0.1   0.00028      0.26       7      34 .]     276     303 ..     273     303 .. 0.94
   3 !   12.2   0.4   0.00016      0.15       1      30 [.     304     333 ..     304     336 .. 0.93
   4 ?    1.1   0.5      0.58   5.5e+02       6      22 ..     355     371 ..     350     372 .. 0.81
   5 ?    1.9   0.0      0.32     3e+02       6      34 .]     390     418 ..     385     418 .. 0.89
   6 ?    5.1   0.0      0.03        28       2      34 .]     464     496 ..     463     496 .. 0.94
   7 !    7.2   0.3    0.0067       6.4       6      34 .]     690     718 ..     687     718 .. 0.92
   8 ?    5.1   0.0     0.031        30       4      27 ..     788     811 ..     785     812 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.28
       TPR_2  3 alynlGlayyklgdyeeAleafekAleldPnn 34
                al+++++ + ++ + e A e ++k+l+ d nn
  CTQ30477.1 43 ALFAQANYWHEKSHDELAMESLQKVLSVDANN 74
                899***********************998776 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00028
       TPR_2   7 lGlayyklgdyeeAleafekAleldPnn 34 
                 +G+a +++g+ + A++ fe++l+ +P++
  CTQ30477.1 276 QGYANLNSGNTAAAKQQFEEVLQTNPQD 303
                 79************************86 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00016
       TPR_2   1 aealynlGlayyklgdyeeAleafekAlel 30 
                 a+al  +G+++ ++gdy+ A +++ +A  l
  CTQ30477.1 304 ADALAGMGYIAQRSGDYQAASQYLSRAADL 333
                 78999**********************876 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.58
       TPR_2   6 nlGlayyklgdyeeAle 22 
                 ++++ +yk+g+  +Al+
  CTQ30477.1 355 AQAQQAYKQGNISQALA 371
                 67889999999999986 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.32
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                  +++++++++d+ +A++ ++  l  dP+n
  CTQ30477.1 390 FRADVLRHNKDLPQAEQTLRSLLNDDPQN 418
                 689*****************999999987 PP

  == domain 6  score: 5.1 bits;  conditional E-value: 0.03
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +al ++++a    g+++ A++ +++ ++ +P++
  CTQ30477.1 464 DALRRQAQAQVSGGNPAGAIATLREGVARYPDD 496
                 6899***************************96 PP

  == domain 7  score: 7.2 bits;  conditional E-value: 0.0067
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPnn 34 
                 n ++ ++++g+y+ A + + +A + dP+n
  CTQ30477.1 690 NEADRLREQGNYAAAYDKLIRAMQSDPQN 718
                 778999*********************97 PP

  == domain 8  score: 5.1 bits;  conditional E-value: 0.031
       TPR_2   4 lynlGlayyklgdyeeAleafekA 27 
                 l  l+++++++g++++A  +++ A
  CTQ30477.1 788 LLLLARVAEAQGHHQQAMTYLRSA 811
                 6789***************99865 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.2      0.15   1.4e+02      12      49 ..      64     101 ..      41     111 .. 0.73
   2 !    6.7   0.9    0.0088       8.3      11      75 ..     292     357 ..     282     363 .. 0.74
   3 !    7.5   4.0    0.0051       4.8       2      80 ..     363     443 ..     342     445 .. 0.91
   4 ?    4.8   0.1     0.034        32      14      50 ..     522     557 ..     509     577 .. 0.73
   5 ?    0.5   0.0      0.74     7e+02      13      49 ..     598     634 ..     586     643 .. 0.80
   6 ?    2.9   0.0      0.13   1.3e+02      32      66 ..     694     729 ..     684     742 .. 0.75
   7 !    9.1   0.0    0.0016       1.5      13      80 ..     743     809 ..     733     811 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.15
                 HHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  12 aerllaaetespedayllAlclylngqykrAyellrka 49 
                 + ++l+ ++++ +++yl Al   + g+ + A ++  ++
  CTQ30477.1  64 LQKVLSVDANNTQALYLMALWSQQGGDMQAAAQWRARL 101
                 34555678888888888888888888888888886666 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0088
                 HHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHH CS
      ANAPC3  11 laerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeA 75 
                  +e +l++++++++++   ++   ++g+y+ A ++l++a +l +   + r   A  +l ++++ +A
  CTQ30477.1 292 QFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAaDLGGDASATRRQQAADALFYGQLAQA 357
                 5788898999999999999********************888777666665555444444444444 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0051
                 TT-HHHHHHHHHHHH..HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3   2 qnnyknAiflaerlla.aetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 q+n+  A+ l+ +l + + ++ +++ ++ A +l +n++  +A + lr++ + ++++ ++r  +  +l +++k  eA a L+
  CTQ30477.1 363 QGNISQALALSAPLAQqSGAQGASAKLFRADVLRHNKDLPQAEQTLRSLlNDDPQNAAARENLYYVLREQNKSAEAQAMLQ 443
                 77888899999999864779999999999*****************************************99999999886 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.034
                 HHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTS CS
      ANAPC3  14 rllaaetespedayllAlclylngqykrAyellrkak 50 
                  ++ +   s++++y+ Al   +ng +++A++ll +  
  CTQ30477.1 522 AAY-RPGASNSALYAAALFASENGAWQQAQTLLARIP 557
                 444.444566677888999999999********9983 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.74
                 HHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  13 erllaaetespedayllAlclylngqykrAyellrka 49 
                   + ++ ++ p da  lA  l ++g+ ++A  l+r++
  CTQ30477.1 598 RAMASTPPKAPADAGKLARLLAESGDLTTAVSLVRNN 634
                 4555577999999999*****************9998 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.13
                 HHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHH CS
      ANAPC3  32 clylngqykrAyellrka.klnskslgcrylfAqcl 66 
                  l ++g+y  Ay+ l +a ++++++    + +A+ +
  CTQ30477.1 694 RLREQGNYAAAYDKLIRAmQSDPQNTDLMFAMARLY 729
                 5789*************9788777775555555543 PP

  == domain 7  score: 9.1 bits;  conditional E-value: 0.0016
                 HHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  13 erllaaetespedayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 + l++++t + +++     + +++g+ +rA +l+  +  +++s+  ++l+A+++ +++++++A + L 
  CTQ30477.1 743 DYLMTRDTPNQDARAGAIDVALSAGNNDRAEQLAGGL-RQDNSPDRLLLLARVAEAQGHHQQAMTYLR 809
                 5555555555555555566778888999999999999.778888899999999999999999999886 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.69   6.5e+02       3      20 ..      65      82 ..      64      94 .. 0.85
   2 ?   -0.8   0.0       2.8   2.6e+03       1      18 [.     247     264 ..     247     265 .. 0.86
   3 !   13.5   0.0   7.7e-05     0.073       2      32 ..     293     323 ..     292     325 .. 0.95
   4 ?   -1.8   0.8       5.7   5.4e+03      12      32 ..     347     369 ..     344     371 .. 0.76
   5 ?   -2.0   0.0       6.9   6.5e+03      19      34 .]     391     406 ..     391     406 .. 0.90
   6 ?    3.5   0.9      0.12   1.1e+02       6      33 ..     411     439 ..     408     440 .. 0.85
   7 !    7.5   0.0    0.0065       6.1       4      28 ..     488     512 ..     485     516 .. 0.87
   8 ?    1.6   0.0      0.48   4.5e+02      18      33 ..     613     628 ..     611     629 .. 0.90
   9 !    9.0   0.0    0.0021         2       4      25 ..     710     734 ..     705     774 .. 0.77
  10 ?   -2.4   0.0       9.4   8.9e+03       4      22 ..    1020    1038 ..    1019    1045 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.69
      TPR_17  3 lkaleldPnnadaynnLA 20
                +k+l  d nn  a++++A
  CTQ30477.1 65 QKVLSVDANNTQALYLMA 82
                8999***********998 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.8
      TPR_17   1 lylkaleldPnnadaynn 18 
                 +y   ++++P ++++ n+
  CTQ30477.1 247 YYDTWMQRHPQDSEVQNY 264
                 589999*******99776 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 7.7e-05
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 ++++l+ +P +ada+  ++++  + Gd++ A
  CTQ30477.1 293 FEEVLQTNPQDADALAGMGYIAQRSGDYQAA 323
                 799**************************98 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 5.7
      TPR_17  12 nadaynnLAelll..knGdlmtA 32 
                 +a +y +LA+++   k+G+  +A
  CTQ30477.1 347 DALFYGQLAQAQQayKQGNISQA 369
                 67888899998877788877766 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 6.9
      TPR_17  19 LAelllknGdlmtArq 34 
                 +A +l++n+dl +A+q
  CTQ30477.1 391 RADVLRHNKDLPQAEQ 406
                 58899*********97 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.12
      TPR_17   6 lel.dPnnadaynnLAelllknGdlmtAr 33 
                 l + dP na a  nL ++l++++++++A+
  CTQ30477.1 411 LLNdDPQNAAARENLYYVLREQNKSAEAQ 439
                 45538***********************8 PP

  == domain 7  score: 7.5 bits;  conditional E-value: 0.0065
      TPR_17   4 kaleldPnnadaynnLAelllknGd 28 
                 + ++++P+++++   LA+ll k G+
  CTQ30477.1 488 EGVARYPDDPWLRLDLARLLQKSGN 512
                 56789****************9997 PP

  == domain 8  score: 1.6 bits;  conditional E-value: 0.48
      TPR_17  18 nLAelllknGdlmtAr 33 
                  LA+ll++ Gdl tA+
  CTQ30477.1 613 KLARLLAESGDLTTAV 628
                 69**********9996 PP

  == domain 9  score: 9.0 bits;  conditional E-value: 0.0021
      TPR_17   4 kaleldPnnadaynnLAelll...k 25 
                 +a++ dP n d+++ +A+l+    +
  CTQ30477.1 710 RAMQSDPQNTDLMFAMARLYQsgkM 734
                 78999***************85541 PP

  == domain 10  score: -2.4 bits;  conditional E-value: 9.4
      TPR_17    4 kaleldPnnadaynnLAel 22  
                  +a++ +P+ +  + nLA+l
  CTQ30477.1 1020 NAADFNPTTSSGMENLAKL 1038
                  7899999999999999987 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.011        10      11      35 ..      58      82 ..      52      87 .. 0.89
   2 !    7.5   2.0    0.0035       3.3       7      41 ..     283     317 ..     277     332 .. 0.89
   3 ?   -1.7   0.5       2.5   2.4e+03      12      19 ..     356     363 ..     352     371 .. 0.51
   4 ?    4.5   0.3      0.03        28       2      34 ..     393     425 ..     392     432 .. 0.89
   5 ?    6.0   0.0      0.01       9.5       5      42 .]     474     511 ..     470     511 .. 0.90
   6 !   12.4   0.1    0.0001     0.096       2      39 ..     693     730 ..     692     732 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.011
      TPR_11 11 eeAieaYkkAlkldPdnaeayynLG 35
                e A+e+++k l  d +n  a+y ++
  CTQ30477.1 58 ELAMESLQKVLSVDANNTQALYLMA 82
                77********************987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0035
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                  G+  +A +++++ l+ +P++a+a+ ++G++ ++ 
  CTQ30477.1 283 SGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRS 317
                 78999999*********************987765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.5
      TPR_11  12 eAieaYkk 19 
                 +A +aYk+
  CTQ30477.1 356 QAQQAYKQ 363
                 55555554 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.03
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynL 34 
                 d+++   ++++A + ++  l+ dP+na a  nL
  CTQ30477.1 393 DVLRHNKDLPQAEQTLRSLLNDDPQNAAARENL 425
                 67778889999******************9998 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.01
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 ++ G+  +Ai+ +++ ++  Pd++++ + L+ +++k G
  CTQ30477.1 474 VSGGNPAGAIATLREGVARYPDDPWLRLDLARLLQKSG 511
                 67788899***********************9999987 PP

  == domain 6  score: 12.4 bits;  conditional E-value: 0.0001
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayy 39 
                 d ++eqG+y +A  ++ +A + dP+n ++ ++++ +y+
  CTQ30477.1 693 DRLREQGNYAAAYDKLIRAMQSDPQNTDLMFAMARLYQ 730
                 899*************************9999998886 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.096        90      16      34 .]      56      74 ..      41      74 .. 0.81
   2 !    8.0   0.0    0.0039       3.7       8      34 .]     277     303 ..     276     303 .. 0.93
   3 !    8.9   0.4     0.002       1.9       1      29 [.     304     332 ..     304     333 .. 0.90
   4 ?   -2.2   0.0       7.5   7.1e+03       8      34 .]     470     496 ..     468     496 .. 0.81
   5 ?    5.0   0.0     0.036        34       4      27 ..     788     811 ..     785     811 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.096
                -HHHHHHHHHHHHHHHHH. CS
       TPR_8 16 dyeeAkeyyekaleldpdn 34
                  e A+e+++k+l+ d +n
  CTQ30477.1 56 HDELAMESLQKVLSVDANN 74
                5689************986 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0039
                 HHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldpdn 34 
                 g++ l+ g+  +Ak+ +e++l+ +p++
  CTQ30477.1 277 GYANLNSGNTAAAKQQFEEVLQTNPQD 303
                 88999******************9986 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.002
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekale 29 
                 a+a+  +g+i +  gdy++A +y+ +a +
  CTQ30477.1 304 ADALAGMGYIAQRSGDYQAASQYLSRAAD 332
                 6789999*****************99976 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 7.5
                 HHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldpdn 34 
                 +++  + g+   A++++++ +   pd+
  CTQ30477.1 470 AQAQVSGGNPAGAIATLREGVARYPDD 496
                 566667799999*******99988875 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.036
                 HHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyeka 27 
                 +++l+++ + +g +++A+ y++ a
  CTQ30477.1 788 LLLLARVAEAQGHHQQAMTYLRSA 811
                 789*****************9865 PP

>> OMP_b-brl  Outer membrane protein beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8  19.8   5.9e-06    0.0056      17     169 ..    1161    1338 ..    1152    1346 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.9e-06
   OMP_b-brl   17 ssfggfyvg.gglglskvkvdgvgsdsgfgfgvgagyefndn........vgvegglsy.sgdkdysgs..gktdikinllsvpvnagyafnlsds. 100 
                  + ++gfyvg gg+   ++   g ++ s++ +++ ag+++ ++         g++ ++   s++ +y++   g++   +n+ sv++ + ++    ++ 
  CTQ30477.1 1161 DGDAGFYVGgGGY---SYL--GQNVASNTSINANAGVYLRPYhdeyrqlqAGLSMSYMDySKNLSYFTYgqGGYFSPQNYVSVSLPVSLTEKYDNWt 1252
                  4459****96778...477..4455577888888888887733444554466666665437778888878655565577777777766664443336 PP

   OMP_b-brl  101 vlpyggaGlg................ytkvevdvsgng................asdsdtdfglglgaGveyaladnwslkaeYrytdlksdadndl 165 
                   ++ g +G++                +          +                + +s++  g++l aG+ y+++++++l++ + y  +     +d+
  CTQ30477.1 1253 MKLGGSVGYQsysqdksayfptnsewQ----------QtletavsngfakeayySATSKSGIGYTLRAGADYKVNKQMTLGGQIGYDTF-----GDY 1334
                  899999999986666666666666653..........044444444458***********************************99777.....555 PP

   OMP_b-brl  166 knnt 169 
                  + +t
  CTQ30477.1 1335 NEST 1338
                  5444 PP

>> DUF4919  Domain of unknown function (DUF4919)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.99   9.4e+02      68     119 ..      52     103 ..      37     105 .. 0.81
   2 !    8.5   0.0    0.0018       1.7      69     118 ..     282     331 ..     262     335 .. 0.88
   3 ?    2.4   0.1      0.14   1.3e+02      69     116 ..     397     444 ..     375     451 .. 0.87
   4 ?    3.6   0.1     0.058        55      64     114 ..     692     742 ..     672     747 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.99
     DUF4919  68 lseeelkeiislaeealkknPfdlkqlnllayaykalgkkeeakiyskrlnk 119
                 +++++ + +++  +++l+ +  + ++l+l+a   ++ g+ ++a+++  rl+k
  CTQ30477.1  52 HEKSHDELAMESLQKVLSVDANNTQALYLMALWSQQGGDMQAAAQWRARLAK 103
                 555555667888899999999999**********************999976 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0018
     DUF4919  69 seeelkeiislaeealkknPfdlkqlnllayaykalgkkeeakiyskrln 118
                 +  +  ++ ++ ee+l++nP d  +l  + y+++  g+ ++a++y +r +
  CTQ30477.1 282 NSGNTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAA 331
                 566777788899******************************99998876 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.14
     DUF4919  69 seeelkeiislaeealkknPfdlkqlnllayaykalgkkeeakiyskr 116
                 ++++l ++ ++ +++l+++P +  + ++l+y++++++k+ ea+++ + 
  CTQ30477.1 397 HNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAMLQT 444
                 56889999999******************************9998765 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.058
     DUF4919  64 dkkelseeelkeiislaeealkknPfdlkqlnllayaykalgkkeeakiys 114
                 + +  ++ ++ ++++   +a++++P +   ++ +a  y++ ++++ea  ++
  CTQ30477.1 692 ADRLREQGNYAAAYDKLIRAMQSDPQNTDLMFAMARLYQSGKMNKEAGVVY 742
                 555667889999***************************999998887665 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   2.7    0.0013       1.2      15      87 ..      34     103 ..      25     105 .. 0.88
   2 ?   -1.3   0.0       2.9   2.8e+03      22      43 ..     124     145 ..     105     152 .. 0.76
   3 !    7.1   0.0    0.0072       6.7       7      65 ..     178     236 ..     175     246 .. 0.89
   4 ?    2.7   0.7      0.17   1.6e+02       6      45 ..     288     327 ..     284     343 .. 0.87
   5 ?   -1.5   4.7       3.4   3.2e+03      12      86 ..     356     426 ..     344     429 .. 0.63
   6 ?    1.8   1.4      0.32     3e+02       9      45 ..     406     442 ..     397     453 .. 0.77
   7 !   10.3   0.0    0.0007      0.66       5      43 ..     480     518 ..     477     525 .. 0.89
   8 ?    0.9   0.1       0.6   5.6e+02      21      61 ..     573     613 ..     560     637 .. 0.67
   9 !    7.5   0.2    0.0056       5.3       7      41 ..     704     738 ..     698     774 .. 0.76
  10 ?    0.4   0.3      0.88   8.3e+02      21      45 ..     784     808 ..     765     811 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0013
      TPR_20  15 laanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkqllkifealgsqdplvakyRrkLss 87 
                 +a n + l+a ++ A+  +++++ e A+e L ++l+ d + ++      l+++ +  g + +++a++R +L++
  CTQ30477.1  34 AAGNDAALQALFAQANYWHEKSHDELAMESLQKVLSVDANNTQ---ALYLMALWSQQGGDMQAAAQWRARLAK 103
                 56678889****************************9988733...368999999999999999999999986 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.9
      TPR_20  22 ldarldlAlallaagryeeAle 43 
                  + +l+lA++++ +g+   Al+
  CTQ30477.1 124 PQGQLNLARQQARGGNIPGALA 145
                 47799**********9999986 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0072
      TPR_20   7 elaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkqll 65 
                  ++el++ +a++p++++ r++l +al  +++ +    +Lle +++  k++d   r++ll
  CTQ30477.1 178 AISELRQYVAQHPQENAPRVALGKALTWREETRREGIALLEPMASGNKEADSGLRQALL 236
                 689***********************999998888888999999999999999999998 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.17
      TPR_20   6 pelaeleaalaanpddldarldlAlallaagryeeAleqL 45 
                 +  +++e+ l++np+d da   +       g+y++A + L
  CTQ30477.1 288 AAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYL 327
                 567899**************99999999999999998766 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 3.4
      TPR_20  12 eaalaanpddldarldlAlallaagryeeAleqLl..eilkrdrkweddaarkqllkifealgsqdplvakyRrkLs 86 
                 +a+ a +  ++  +l+l+  l++++  + A ++L+  ++l+++++    +a ++l     +l ++dp  a++R +L+
  CTQ30477.1 356 QAQQAYKQGNISQALALSAPLAQQSGAQGASAKLFraDVLRHNKDL--PQAEQTL----RSLLNDDPQNAAARENLY 426
                 4555566779999999999999999999999999833355555554..3333333....333345555555555555 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.32
      TPR_20   9 aeleaalaanpddldarldlAlallaagryeeAleqL 45 
                 ++l++ l+++p++ +ar +l  +l ++++ +eA + L
  CTQ30477.1 406 QTLRSLLNDDPQNAAARENLYYVLREQNKSAEAQAML 442
                 5688888999999999999988888888888886655 PP

  == domain 7  score: 10.3 bits;  conditional E-value: 0.0007
      TPR_20   5 apelaeleaalaanpddldarldlAlallaagryeeAle 43 
                 a  +a+l++ +a  pdd  +rldlA++l + g+  eA +
  CTQ30477.1 480 AGAIATLREGVARYPDDPWLRLDLARLLQKSGNGSEASS 518
                 56799***************************9999966 PP

  == domain 8  score: 0.9 bits;  conditional E-value: 0.6
      TPR_20  21 dldarldlAlallaagryeeAleqLleilkrdrkweddaar 61 
                 +++++l  A+ +la+g+  +A + L ++ ++  k+  da +
  CTQ30477.1 573 NYNLQLVTAENYLAQGNTIAASNTLRAMASTPPKAPADAGK 613
                 45577777888888888888877777666665555555544 PP

  == domain 9  score: 7.5 bits;  conditional E-value: 0.0056
      TPR_20   7 elaeleaalaanpddldarldlAlallaagryeeA 41 
                   ++l +a++++p++ d+++++A+++ +++ ++eA
  CTQ30477.1 704 AYDKLIRAMQSDPQNTDLMFAMARLYQSGKMNKEA 738
                 567788999******************99999998 PP

  == domain 10  score: 0.4 bits;  conditional E-value: 0.88
      TPR_20  21 dldarldlAlallaagryeeAleqL 45 
                   d  l lA++  a+g++++A++ L
  CTQ30477.1 784 SPDRLLLLARVAEAQGHHQQAMTYL 808
                 34778899*************9876 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.61   5.8e+02      18      34 .]      58      74 ..      42      74 .. 0.78
   2 ?    6.1   0.0     0.011        10       8      34 .]     277     303 ..     275     303 .. 0.92
   3 ?   11.2   0.6   0.00027      0.26       1      28 [.     304     331 ..     304     333 .. 0.94
   4 ?   -0.6   0.3       1.5   1.4e+03      10      21 ..     359     370 ..     351     372 .. 0.69
   5 ?   -0.6   0.0       1.5   1.4e+03       2      34 .]     464     496 ..     463     496 .. 0.90
   6 ?    0.3   0.2      0.75   7.1e+02      12      34 .]     696     718 ..     695     718 .. 0.87
   7 ?   -0.2   0.0       1.1     1e+03       5      27 ..     789     811 ..     785     811 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.61
                HHHHHHHHHHHHHSTTH CS
       TPR_1 18 deAleyyekALelnPnn 34
                + A e  +k+L+++ nn
  CTQ30477.1 58 ELAMESLQKVLSVDANN 74
                78***********9887 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.011
                 HHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPnn 34 
                 G+a ++ g+   A + +e++L+ nP++
  CTQ30477.1 277 GYANLNSGNTAAAKQQFEEVLQTNPQD 303
                 8899999******************86 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekAL 28 
                 a+al ++G++ ++ g+y+ A +y ++A 
  CTQ30477.1 304 ADALAGMGYIAQRSGDYQAASQYLSRAA 331
                 89************************96 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.5
                 HHHHTT-HHHHH CS
       TPR_1  10 ayfklgkydeAl 21 
                   +k+g+  +Al
  CTQ30477.1 359 QAYKQGNISQAL 370
                 457888888887 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 +al + ++a  + g++  A++  ++ +  +P++
  CTQ30477.1 464 DALRRQAQAQVSGGNPAGAIATLREGVARYPDD 496
                 6788899999999************99999986 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.75
                 HHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  12 fklgkydeAleyyekALelnPnn 34 
                 +++g+y  A +   +A + +P+n
  CTQ30477.1 696 REQGNYAAAYDKLIRAMQSDPQN 718
                 689******99999999998886 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 1.1
                 HHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekA 27 
                   l+ +   +g +++A  y + A
  CTQ30477.1 789 LLLARVAEAQGHHQQAMTYLRSA 811
                 568889999********998765 PP

>> Opacity  Opacity family porin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3    0.0001     0.095      74     116 ..    1291    1336 ..    1242    1342 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.0001
     Opacity   74 kkeaf...asetrvGlGvlaGvkykltpnltldtgvrynrlGrlea 116 
                   kea+   +s+  +G+   aG++yk+++ +tl + + y+ +G  + 
  CTQ30477.1 1291 AKEAYysaTSKSGIGYTLRAGADYKVNKQMTLGGQIGYDTFGDYNE 1336
                  444443337888899999***********************98854 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.9      0.11     1e+02       9      61 ..      55     107 ..      47     117 .. 0.82
   2 ?    1.1   0.0      0.47   4.4e+02      45      62 ..     175     192 ..     174     202 .. 0.82
   3 ?   15.0   2.7   2.1e-05      0.02      10      67 ..     285     342 ..     276     348 .. 0.86
   4 ?    7.2   0.1     0.006       5.7      25      49 ..     493     517 ..     478     536 .. 0.87
   5 ?    2.9   0.0      0.13   1.2e+02      13      49 ..     592     628 ..     582     630 .. 0.83
   6 ?    5.7   0.6     0.017        16      41      72 ..     697     728 ..     692     729 .. 0.93
   7 ?   -2.9   0.2       8.2   7.7e+03      28      53 ..     784     809 ..     781     811 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.11
       TPR_9   9 edweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                  + e a++ ++ +l ++ +  + ++  +l  +q G+++aA++   + +  apd
  CTQ30477.1  55 SHDELAMESLQKVLSVDANNTQALYLMALWSQQGGDMQAAAQWRARLAKAAPD 107
                 556789999999****************************9866665555555 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.47
       TPR_9  45 lsaAladLeaylalapda 62 
                 + +A+ +L +y+a+ p+ 
  CTQ30477.1 175 YPQAISELRQYVAQHPQE 192
                 568*************65 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 2.1e-05
       TPR_9  10 dweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaea 67 
                 + ++a +  e +l+ +P+d++ +   G + +++G+++aA + L ++++l +da + ++
  CTQ30477.1 285 NTAAAKQQFEEVLQTNPQDADALAGMGYIAQRSGDYQAASQYLSRAADLGGDASATRR 342
                 556666667889*************************************998877665 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.006
       TPR_9  25 aPddpeerrdRGlllaqlGclsaAl 49 
                  Pddp +r+d ++ll+++G+ s+A 
  CTQ30477.1 493 YPDDPWLRLDLARLLQKSGNGSEAS 517
                 7*******************99996 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.13
       TPR_9  13 ralavverllllaPddpeerrdRGlllaqlGclsaAl 49 
                 +a  ++  +   +P++p +    ++lla++G+l +A+
  CTQ30477.1 592 AASNTLRAMASTPPKAPADAGKLARLLAESGDLTTAV 628
                 666777788999********************99997 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.017
       TPR_9  41 qlGclsaAladLeaylalapdapdaeairaqL 72 
                 ++G+++aA + L ++++ +p++ d   ++a+L
  CTQ30477.1 697 EQGNYAAAYDKLIRAMQSDPQNTDLMFAMARL 728
                 68**********************99999997 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 8.2
       TPR_9  28 dpeerrdRGlllaqlGclsaAladLe 53 
                 +p+ ++  +++ + +G+ ++A+  L 
  CTQ30477.1 784 SPDRLLLLARVAEAQGHHQQAMTYLR 809
                 56666677888889999999988875 PP

>> TAF1_subA  TAF RNA Polymerase I subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00026      0.25     118     263 ..     248     516 ..     246     523 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
   TAF1_subA 118 YqkWysklpeelqledsdv................................................................................ 136
                 Y++W++  p+++++++  +                                                                                
  CTQ30477.1 248 YDTWMQRHPQDSEVQNYFRerrsgqargqgyanlnsgntaaakqqfeevlqtnpqdadalagmgyiaqrsgdyqaasqylsraadlggdasatrrqqaa 346
                 889999999999998887799999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

   TAF1_subA 137 .....................................edeessllleqelhndfykaavkllrlalistPgvwdafllpyvqlLelggkedeAlevlke 198
                                                        +++   ++   hn+   +a++ lr+ l   P+   a+   +  +L   +k  eA+++l++
  CTQ30477.1 347 dalfygqlaqaqqaykqgnisqalalsaplaqqsgaqGASAKLFRADVLRHNKDLPQAEQTLRSLLNDDPQN-AAARENLYYVLREQNKSAEAQAMLQT 444
                 999999999999999999999999999999999987522333333344457788889999999999999999.99**********************65 PP

   TAF1_subA 199 c..aydkklPsrlnahllleqflkrnkaskkklisc........vLk.LhelvPsdPtlmlelekLlkkskkgeys 263
                    ++ +kl++r+ a +   + l+r+ +    ++s         +L+   +  P dP l l+l++Ll+ks +g++ 
  CTQ30477.1 445 LpqSLRQKLQPRVVAGMP-GDALRRQAQA---QVSGgnpagaiaTLReGVARYPDDPWLRLDLARLLQKSGNGSEA 516
                 558999************.8888888733...333335677667788777789*****************997654 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00021      0.19       1      25 [.     124     148 ..     124     149 .. 0.94
   2 ?   -0.8   0.5       3.8   3.6e+03       3      20 ..     306     323 ..     304     325 .. 0.87
   3 ?    2.7   0.2      0.27   2.6e+02       4      23 ..     353     372 ..     350     374 .. 0.90
   4 ?    3.3   0.0      0.18   1.7e+02       2      25 ..     386     409 ..     385     410 .. 0.90
   5 ?    1.1   0.2      0.93   8.8e+02       9      25 ..     427     443 ..     419     444 .. 0.80
   6 ?    2.4   0.7      0.36   3.4e+02       3      26 .]     465     488 ..     463     488 .. 0.90
   7 ?    5.1   0.0     0.047        44       1      20 [.     497     516 ..     497     520 .. 0.89
   8 ?    2.8   0.0      0.25   2.4e+02       4      25 ..     577     598 ..     575     599 .. 0.85
   9 ?    5.6   0.0     0.032        30       7      25 ..     614     632 ..     611     633 .. 0.92
  10 ?    0.8   0.1       1.1   1.1e+03       5      20 ..     689     704 ..     687     706 .. 0.88
  11 ?   -1.1   1.0       4.7   4.5e+03       3      24 ..     755     776 ..     753     777 .. 0.86
  12 ?    6.2   1.1     0.021        20       4      22 ..     788     806 ..     786     810 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00021
       TPR_4   1 arallaLArallalGdldeAralle 25 
                 ++ +l+LAr +++ G+ + A+a+++
  CTQ30477.1 124 PQGQLNLARQQARGGNIPGALATWR 148
                 6789*******************99 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 3.8
       TPR_4   3 allaLArallalGdldeA 20 
                 al++++  +++ Gd+ +A
  CTQ30477.1 306 ALAGMGYIAQRSGDYQAA 323
                 88999999******9998 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.27
       TPR_4   4 llaLArallalGdldeAral 23 
                 +la+A+ ++ +G+  +A+al
  CTQ30477.1 353 QLAQAQQAYKQGNISQALAL 372
                 7899*************997 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.18
       TPR_4   2 rallaLArallalGdldeAralle 25 
                  a l++A +l +  dl++A+++l+
  CTQ30477.1 386 SAKLFRADVLRHNKDLPQAEQTLR 409
                 678999*****************9 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.93
       TPR_4   9 rallalGdldeAralle 25 
                  +l ++  ++eA+a+l+
  CTQ30477.1 427 YVLREQNKSAEAQAMLQ 443
                 57899999******996 PP

  == domain 6  score: 2.4 bits;  conditional E-value: 0.36
       TPR_4   3 allaLArallalGdldeAraller 26 
                 al  +A+a+   G+++ A a+l++
  CTQ30477.1 465 ALRRQAQAQVSGGNPAGAIATLRE 488
                 667789****************97 PP

  == domain 7  score: 5.1 bits;  conditional E-value: 0.047
       TPR_4   1 arallaLArallalGdldeA 20 
                 ++++l+LAr+l+  G+  eA
  CTQ30477.1 497 PWLRLDLARLLQKSGNGSEA 516
                 79*************98887 PP

  == domain 8  score: 2.8 bits;  conditional E-value: 0.25
       TPR_4   4 llaLArallalGdldeAralle 25 
                 +l+ A+ +la+G+  +A  +l+
  CTQ30477.1 577 QLVTAENYLAQGNTIAASNTLR 598
                 6788**********99987777 PP

  == domain 9  score: 5.6 bits;  conditional E-value: 0.032
       TPR_4   7 LArallalGdldeAralle 25 
                 LAr+l++ Gdl +A  l++
  CTQ30477.1 614 LARLLAESGDLTTAVSLVR 632
                 9*************99987 PP

  == domain 10  score: 0.8 bits;  conditional E-value: 1.1
       TPR_4   5 laLArallalGdldeA 20 
                 ++ A  l ++G++++A
  CTQ30477.1 689 INEADRLREQGNYAAA 704
                 5789999********9 PP

  == domain 11  score: -1.1 bits;  conditional E-value: 4.7
       TPR_4   3 allaLArallalGdldeArall 24 
                 a+++   ++l +G+ d+A++l+
  CTQ30477.1 755 ARAGAIDVALSAGNNDRAEQLA 776
                 67778889999********997 PP

  == domain 12  score: 6.2 bits;  conditional E-value: 0.021
       TPR_4   4 llaLArallalGdldeAra 22 
                 ll+LAr++ a+G++ +A +
  CTQ30477.1 788 LLLLARVAEAQGHHQQAMT 806
                 689*************965 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0         2   1.8e+03       2      28 ..      43      69 ..      42      73 .. 0.75
   2 ?    3.9   1.3      0.11     1e+02       1      21 [.      76      96 ..      76     108 .. 0.83
   3 ?   -0.3   0.0       2.3   2.2e+03       2      24 ..     126     148 ..     125     149 .. 0.87
   4 ?    0.4   0.3       1.4   1.3e+03       4      32 ..     164     191 ..     161     192 .. 0.76
   5 ?    7.7   0.1    0.0064         6       6      32 ..     276     302 ..     272     303 .. 0.87
   6 ?    2.9   1.2      0.23   2.1e+02       1      26 [.     305     330 ..     305     333 .. 0.85
   7 ?   -0.1   1.4         2   1.9e+03       7      25 ..     346     363 ..     343     372 .. 0.71
   8 ?    3.8   0.0      0.11     1e+02       7      32 ..     392     417 ..     386     418 .. 0.85
   9 ?    0.3   0.1       1.5   1.4e+03      10      26 ..     429     445 ..     427     448 .. 0.84
  10 ?   10.6   0.0   0.00076      0.72       1      32 [.     464     495 ..     464     496 .. 0.95
  11 ?    1.7   0.4      0.54   5.1e+02       2      26 ..     532     556 ..     531     557 .. 0.85
  12 ?   -1.9   0.1       7.7   7.2e+03      11      31 ..     696     716 ..     694     718 .. 0.72
  13 ?   -0.4   0.1       2.5   2.4e+03       2      19 ..     721     738 ..     720     748 .. 0.79
  14 ?    7.7   0.3    0.0067       6.3       3      26 ..     788     811 ..     786     814 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 2
                HHHHHH.HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  2 Alykla.lsyrklgdtdkAlealerlik 28
                Al+ +a + ++k    + A+e l+++++
  CTQ30477.1 43 ALFAQAnYWHEKS-HDELAMESLQKVLS 69
                7777774444445.8899*******985 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.11
                HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  1 dAlyklalsyrklgdtdkAle 21
                +Aly++al  +++gd ++A +
  CTQ30477.1 76 QALYLMALWSQQGGDMQAAAQ 96
                79*****9999999**99976 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAleale 24 
                  +++la+ + ++g+   Al++++
  CTQ30477.1 126 GQLNLARQQARGGNIPGALATWR 148
                 5799*******99*****99876 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   4 yklalsyrklgdtdkAlealerlikeYPd 32 
                 y+l ++  k   + +A+  l++ + ++P+
  CTQ30477.1 164 YYLTMASDKS-LYPQAISELRQYVAQHPQ 191
                 5555555555.688*************97 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.0064
                 HHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYPd 32 
                 ++++ ++ g+t++A++ +e++++  P+
  CTQ30477.1 276 QGYANLNSGNTAAAKQQFEEVLQTNPQ 302
                 577778868***************997 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerl 26 
                 dAl  +++  ++ gd+++A ++l r 
  CTQ30477.1 305 DALAGMGYIAQRSGDYQAASQYLSRA 330
                 78999999999867*********987 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealer 25 
                 a +++ + + ++A +a+++
  CTQ30477.1 346 ADALFYG-QLAQAQQAYKQ 363
                 5666656.78888888765 PP

  == domain 8  score: 3.8 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   7 alsyrklgdtdkAlealerlikeYPd 32 
                 a  +r  +d  +A ++l++l+++ P+
  CTQ30477.1 392 ADVLRHNKDLPQAEQTLRSLLNDDPQ 417
                 666777789**************997 PP

  == domain 9  score: 0.3 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealerl 26 
                 +r+++++++A ++l+ l
  CTQ30477.1 429 LREQNKSAEAQAMLQTL 445
                 678999*********98 PP

  == domain 10  score: 10.6 bits;  conditional E-value: 0.00076
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlikeYPd 32 
                 dAl ++a+++ ++g+++ A+++l++ + +YPd
  CTQ30477.1 464 DALRRQAQAQVSGGNPAGAIATLREGVARYPD 495
                 7999********9******************9 PP

  == domain 11  score: 1.7 bits;  conditional E-value: 0.54
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerl 26 
                 Aly +al   + g +++A ++l r+
  CTQ30477.1 532 ALYAAALFASENGAWQQAQTLLARI 556
                 7888888888889********9885 PP

  == domain 12  score: -1.9 bits;  conditional E-value: 7.7
                 HHHHHHHHHHHHHHHHHHH-T CS
       TPR_6  11 rklgdtdkAlealerlikeYP 31 
                 r++g++++A + l r  ++ P
  CTQ30477.1 696 REQGNYAAAYDKLIRAMQSDP 716
                 568899999888777776666 PP

  == domain 13  score: -0.4 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkA 19 
                  ++ +a++y++++   +A
  CTQ30477.1 721 LMFAMARLYQSGKMNKEA 738
                 5899******99877776 PP

  == domain 14  score: 7.7 bits;  conditional E-value: 0.0067
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerl 26 
                 l++la+  +++g +++A+++l++ 
  CTQ30477.1 788 LLLLARVAEAQGHHQQAMTYLRSA 811
                 899******************975 PP

>> Alkyl_sulf_dimr  Alkyl sulfatase dimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.1    0.0026       2.5      72     132 ..      44     104 ..      26     108 .. 0.79
   2 ?    0.8   2.9      0.65   6.1e+02      68     127 ..     303     365 ..     276     375 .. 0.72
   3 ?    2.2   3.1      0.24   2.3e+02      71     122 ..     387     438 ..     353     452 .. 0.65
   4 ?    5.6   0.1     0.022        21      45     129 ..     660     745 ..     658     752 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0026
                      HHHHHHHHH..HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHH-SSHHHHHHHHHH CS
  Alkyl_sulf_dimr  72 vlekakeal..kegdyrwaaellnhlvfadpenaeakelkadaleqlgyqaesatwRniYlsg 132
                      + ++a+  +  ++   ++a+e l++++  d +n++a  l a + +q g  + +a+wR     +
       CTQ30477.1  44 LFAQAN--YwhEKSHDELAMESLQKVLSVDANNTQALYLMALWSQQGGDMQAAAQWRARLAKA 104
                      333333..244888899****************************************876655 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.65
                      SHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH...STT-HHHHHHHHHHHHHHHHH-SSHHHHH CS
  Alkyl_sulf_dimr  68 gaekvlekakealkegdyrwaaellnhlvfa...dpenaeakelkadaleqlgyqaesatwRn 127
                      +a++++ +   a ++gdy++a + l+ +       +  ++++++ a  + ql++++++    n
       CTQ30477.1 303 DADALAGMGYIAQRSGDYQAASQYLSRAADLggdASATRRQQAADALFYGQLAQAQQAYKQGN 365
                      778888888889999***********9999844234456666678888999999988776655 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.24
                      HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHH-SS CS
  Alkyl_sulf_dimr  71 kvlekakealkegdyrwaaellnhlvfadpenaeakelkadaleqlgyqaes 122
                      + l +a   + ++d+  a + l  l+  dp+na+a+e +  +l++  + ae+
       CTQ30477.1 387 AKLFRADVLRHNKDLPQAEQTLRSLLNDDPQNAAARENLYYVLREQNKSAEA 438
                      3334444455667777777777777778888888888877777766666654 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.022
                      S-GGGTS---HHHHHHHHHHHTT.SHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHHHH-SSHHHHHHH CS
  Alkyl_sulf_dimr  45 gnPanLnplppeekakrlvelmG.gaekvlekakealkegdyrwaaellnhlvfadpenaeakelkadaleqlgyqaesatwRniY 129
                      g+++nL   p+ ++++   +l++  +  v+++a + +++g+y +a   l  ++++dp+n++   + a+ +++    +e++++  + 
       CTQ30477.1 660 GEAQNLISNPQLQASSTPTQLASiRNGYVINEADRLREQGNYAAAYDKLIRAMQSDPQNTDLMFAMARLYQSGKMNKEAGVVYDYL 745
                      66778888888888888888888667789*******************************99999999999888888777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       832  (0.0464053); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.95u 0.24s 00:00:01.19 Elapsed: 00:00:00.46
# Mc/sec: 8789.87
//
Query:       CTQ30478.1  [L=811]
Description: putative cellulose synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-191  637.7   0.3   2.3e-191  637.3   0.3    1.0  1  BcsB      Bacterial cellulose synthase subunit
  ------ inclusion threshold ------
       0.46    9.9  13.5       0.75    9.2  13.5    1.4  1  FAP       Fibronectin-attachment protein (FAP)


Domain annotation for each model (and alignments):
>> BcsB  Bacterial cellulose synthase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  637.3   0.3  2.5e-195  2.3e-191       6     605 ..     104     709 ..     100     710 .. 0.98

  Alignments for each domain:
  == domain 1  score: 637.3 bits;  conditional E-value: 2.5e-195
        BcsB   6 lsfadlgvpgdltLrGvddegglsfglradqvvtnasLsLaytvSpaLlaelshLkvllNgellgtlplekedagkeevsldipprlltdfNrlrleli 104
                 l++a++g+p+++ L+G + +gg+sf+l+adqvv + +LsLa++vSp++++++ +L+++lNg++lgtlpl ++ ++  +++ldipp+l++++N+l+++++
  CTQ30478.1 104 LNLAQMGMPDGIILSGGQRQGGVSFTLPADQVVIHSQLSLAVRVSPEMASRNATLQLMLNGQPLGTLPLGADGEDVSHYQLDIPPALMVSSNNLSVKIN 202
                 789************************************************************************************************ PP

        BcsB 105 ghytedCedpassslwaeIspdStLeltgqklelkndLsllpapffdkrdserlelpivfpaapdpatlqaAgivAswfGaladyrgadfpvstdqlPe 203
                 + +t++C+++ +++  +++ p+S+++ ++q+l++++dLs++p+pffd+ +++++ + +   a+p+++  +aA++++sw+G++adyrg++f++++d+lPe
  CTQ30478.1 203 DGDTLQCQRDIHDTSRVTVLPTSHFSWESQQLNISDDLSHFPRPFFDSMQMTPADIAVAYGAKPSADVFSAAALISSWLGIQADYRGIAFSALRDRLPE 301
                 *************************************************************************************************** PP

        BcsB 204 egnavvfatndekpagldlPevegptlavidnPsdpegklLlvtGrddaelrkAakaLalgsallsgdtvsvdavkelpprkpydAPrwvptdrpvrLs 302
                  ++++v+++++e+++g+ lPe ++p l++i nP++p +klLl++G++d++lr Aa++L+ g+ + ++ t+ v + +++p  k+ydAPrw+ptdrpv+Ls
  CTQ30478.1 302 -RHGIVIGHPGEQVGGMMLPETDKPLLRIIANPANPAYKLLLIVGKNDTALRMAAWRLTRGNFAPQTATLDV-EPQTIPVGKAYDAPRWIPTDRPVKLS 398
                 .***********************************************************************.99************************ PP

        BcsB 303 eLgaeseelqvrGlrpdpislnfrlPpDlflwrgegiplqlryrytaasred.rtSrlsvslNgqfigslpLssetgeekkl..lgldasqeqlevtlp 398
                 eL +++++ +v+G++++p++++fr++pDl+lw+ge+iplq+ yr++++s+++ ++S lsv lNg+f+++lp+++++ +ek +  lg+da+qe+++++l 
  CTQ30478.1 399 ELLRKDQSPTVSGVWHEPLRIAFRAAPDLYLWDGETIPLQVGYRFPSESWINeDKSLLSVTLNGTFLNNLPMNKQGPLEKVWryLGGDARQERFTIPLA 497
                 *********************************************************************************99888************* PP

        BcsB 399 asllksanqLqfefdlepkkdgeCeavapdnlraaIdpdStidlsgfahyaalPnLaafanaGFPFtrlADlseTavvlpdrptaaelsallnllgrmG 497
                 ++l++++nqL+++f+ +pk+d +C+ + ++n++++I +dS+idls+++h+  lPnL++f++a+FPF+rlAD+s+T+++lp+ p+++++++llnl++r G
  CTQ30478.1 498 PYLIYGDNQLSMYFNVVPKDDVPCSVLLNNNIKSRITDDSWIDLSKTRHFSLLPNLSYFVGASFPFSRLADYSQTTLLLPADPSETQVATLLNLAARSG 596
                 *************************************************************************************************** PP

        BcsB 498 aqtgypalrvtv.....adaadaesladkdlLvigslesqpllarlekslpllldqrrlelkdrseelkelksgrlrrddekadadislsssgplaalv 591
                 ++tg+++++ +v     ++ +d++sl+++d+L++++l++q+++++l +++p++  ++ l+++++  ++k  +    + ++++ dad+++sss+++++++
  CTQ30478.1 597 NATGTALANNRVvlgmpTGGGDLQSLRERDVLAVTALDQQAFNQSLLADSPYRPVDNVLSVREPDLWQKVQRRLTGDWTSASLDADRYFSSSSAWRGFI 695
                 *****************9*************************************999999999988876555555669999***************** PP

        BcsB 592 gfesPfnsgrsvva 605
                 +++sP+ns r vv+
  CTQ30478.1 696 SYRSPWNSTRLVVV 709
                 ************98 PP

>> FAP  Fibronectin-attachment protein (FAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2  13.5   8.4e-05      0.75      19     106 ..       9      96 ..       1     143 [. 0.58

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 8.4e-05
         FAP  19 aiaavagasavalalPavanadpePaPppPstaeaapaeaaaapaPaapapaPapadp.napeaaPapadPnapapppadPnapappav 106
                  +a + +a a+    P    a p   P+   +a++ p + ++a++P++ a++ apa++ +a+++aPap+ P+ p pp     ap   +v
  CTQ30478.1   9 LLAGMLSAPALHSEEPGSGAAAPLSFPQLNDAADSEPGDEPPAASPEEGASPAAPATAgDAAATAPAPVMPDLP-PPVSGTAAPEVIPV 96 
                 34455555555555566666666666666666666666666666666665444443331334445556666553.33333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 5687.38
//
Query:       CTQ30479.1  [L=703]
Description: Cellulose synthase catalytic subunit (UDP-forming) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-33  115.0   0.0    4.8e-33  114.4   0.0    1.3  1  Glycos_transf_2  Glycosyl transferase family 2
      3e-18   66.6   0.1    1.5e-17   64.2   0.0    2.1  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    8.9e-18   64.9   3.4    8.9e-18   64.9   3.4    2.5  2  Glyco_trans_2_3  Glycosyl transferase family group 2
    2.1e-15   56.7   0.0    3.6e-15   55.9   0.0    1.3  1  Glyco_transf_21  Glycosyl transferase family 21
      1e-11   44.1   7.4    2.7e-07   29.5   1.5    3.2  3  Cellulose_synt   Cellulose synthase
      1e-08   35.4   0.2      2e-08   34.4   0.2    1.5  1  PilZ             PilZ domain
  ------ inclusion threshold ------
        7.4    6.7  15.4        1.4    9.0   0.4    3.3  4  TPPK_C           Thiamine pyrophosphokinase C terminal


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.0   1.9e-36   4.8e-33       1     169 [.     130     300 ..     130     301 .. 0.95

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 1.9e-36
                      EEEEEESS-.TTTHHHHHHHHHHH...GGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-.HHHHHHHHHHHH--SSEEEEEESS CS
  Glycos_transf_2   1 svviptyNe.ektlletlesllaq...dpypdfeiivvDDgStDetveileelakedprvrvirreenv.GkagalnaglraatgdyilflDaD 89 
                      ++ ip+yNe  + ++ t+ ++  q   +p+++++i+++DDg + e + ++ +      +v +i+r+ n+ +kag+ln++l  ++g++i+++D D
       CTQ30479.1 130 DIYIPSYNEpLEVVRDTVLAA--QcidYPKDKMKIYLLDDGKRSEFAVFAADV-----GVGYITRNDNKhAKAGNLNHALTLTQGELICVFDCD 216
                      589******999999999854..45599*************************.....9*********************************** PP

                      EEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS.....EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEHHHHHC CS
  Glycos_transf_2  90 depdpdwleklvealekdgadvvlgqrprifgetdeiernkrv.....generlyfkerkrslkgnlsfeigsaallrrealeel 169
                      ++ ++ +l+ +v+ + k ++ ++l+q+p++f+++d++ern+ v     +e   +y++++++++++n++f++gs+a++rreal ++
       CTQ30479.1 217 HVATRVFLQATVGGFLK-DPMLALVQTPHYFYSPDPFERNLSVgrnipNEGMLFYGPIQQGNDNWNATFFCGSCAVIRREALAQI 300
                      *****************.777************************************************************9776 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0     6e-21   1.5e-17       4     230 .]     129     354 ..     127     354 .. 0.85
   2 ?   -0.5   0.1      0.36   9.3e+02     208     228 ..     663     692 ..     611     694 .. 0.70

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 6e-21
  Glyco_tranf_2_3   4 lavlVptfneed.vlgevlesllaqeypr..vevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllv 94 
                      + + +p++ne+  v+++++ ++  ++yp    ++++ +d+++ e + +a        dv+v ++++ +   + +k+ +ln+al  ++++l+ ++
       CTQ30479.1 129 VDIYIPSYNEPLeVVRDTVLAAQCIDYPKdkMKIYLLDDGKRSEFAVFAA-------DVGVGYITRND--NKHAKAGNLNHALTLTQGELICVF 213
                      6789******986777788888877785555*************888775.......68999997766..567********************* PP

  Glyco_tranf_2_3  95 DdDtvvePdtlkrllqff.ltpkvgavgtpvfllnrs...tlvsalgal..efaerhlrflaarralgvltlnGsgslirrevlkelegldplf 182
                      D D v    +l++++  f ++p  + v+tp +++ ++   + +s+  ++  e    +  + +  +  +++++ Gs+ +irre l++++g+    
       CTQ30479.1 214 DCDHVATRVFLQATVGGFlKDPMLALVQTPHYFYSPDpfeRNLSVGRNIpnEGMLFYGPIQQGNDNWNATFFCGSCAVIRREALAQIGGFAV-E 306
                      ******************9************99765534455665555511333333455556677789999********************.* PP

  Glyco_tranf_2_3 183 lltdDyelglrlrragfrtayvpgaavrevfpsslkayikqrnRwvyg 230
                       +t+D++++l + r g+++a++  ++   + ++ l   + qr+Rw++g
       CTQ30479.1 307 TVTEDAHTALKFQRLGWKSAFLDIPLAAGLATERLVVHVIQRTRWARG 354
                      *********************************************986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.36
  Glyco_tranf_2_3 208 a.........vrevfpsslkayikqrnRwv 228
                      +         v e+f+ ++k  + qrnR +
       CTQ30479.1 663 FrsfftilrcVFELFWLTWKTRRSQRNRAT 692
                      044444433388899*************76 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   3.9         5   1.3e+04     165     187 ..      66     101 ..       5     111 .. 0.50
   2 !   64.9   3.4   3.5e-21   8.9e-18       2     179 ..     210     406 ..     209     465 .. 0.73

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5
  Glyco_trans_2_3 165 salplhlallllfslla.............lalvll 187
                       ++ ++l+ +l f+ ++             +++v+l
       CTQ30479.1  66 RYMYFRLTQTLHFNSSIeailgmglflaevYIWVML 101
                      222222222222221112233344433333333333 PP

  == domain 2  score: 64.9 bits;  conditional E-value: 3.5e-21
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaa.elaspevaivqgpvlvmnvanwleelaalff..aedhgkdilvrealgr..vvpsvGsgaflrrsalqevggw 90 
                      i + D+D v ++ +l  ++  +l++p  a+vq+p +++   ++ ++l + +   +e +++ ++ ++++ +   +++ Gs+a++rr+al ++gg+
       CTQ30479.1 210 ICVFDCDHVATRVFLQATVGgFLKDPMLALVQTPHYFYSPDPFERNLSVGRNipNEGMLFYGPIQQGNDNwnATFFCGSCAVIRREALAQIGGF 303
                      7899**************9967779***********99888999999999845799999999999988776589999***************** PP

  Glyco_trans_2_3  91 dgdessvsEDfdmglrlqrkGyrvrfvpeslvkekspltlraalrQrkRwayGc.eleklil............lvrllgyl..gsllwsalp. 168
                          ++v+ED + +l+ qr+G++  f + +l       +l  ++ Qr+Rwa+G  +    i+             +++l yl  +++  +alp 
       CTQ30479.1 304 A--VETVTEDAHTALKFQRLGWKSAFLDIPLAAGLATERLVVHVIQRTRWARGMtQ----IFrvdnplfgrgltFQQRLCYLsaMLYYQFALPr 391
                      *..***************************99999999***************641....3312233333333233333332112222233332 PP

  Glyco_trans_2_3 169 ..lhl..allllfsl 179
                        +    +++llf+l
       CTQ30479.1 392 vvFVTapLAYLLFNL 406
                      211111122233332 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   1.4e-18   3.6e-15      17     173 .]     193     353 ..     182     353 .. 0.85

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 1.4e-18
  Glyco_transf_21  17 pKvnnllqaleaakydllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaaleaafl.....ntlagvlqa..klsglgfav 102
                       K  nl++al+  + +l+++ D+d+++++ +L+  ++ + + p  +lV+ +++ + ++ + ++l            ++g +q   +   + f +
       CTQ30479.1 193 AKAGNLNHALTLTQGELICVFDCDHVATRVFLQATVGGFLKdPMLALVQTPHYFYSPDPFERNLSVGRNipnegMLFYGPIQQgnDNWNATFFC 286
                      69*******************************999987654*****************9999954443364422336666665544488**** PP

  Glyco_transf_21 103 GksmalrreaLeaiGGfealadeLAeDyalgkllraaGlkvvlspapiaqtsvprrsslrallaRqlrWar 173
                      G++ ++rreaL++iGGf+   +++ eD+ ++  +++ G+k ++ ++p+a   +  ++ +  + +R +rWar
       CTQ30479.1 287 GSCAVIRREALAQIGGFAV--ETVTEDAHTALKFQRLGWKSAFLDIPLAAGLAT-ERLVVHVIQR-TRWAR 353
                      ******************9..**************************9998877.4677777777.79986 PP

>> Cellulose_synt  Cellulose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1     3e-05     0.078      11      44 ..     136     169 ..     128     178 .. 0.87
   2 !    5.4   0.1    0.0021       5.4     181     288 ..     191     297 ..     180     303 .. 0.74
   3 !   29.5   1.5   1.1e-10   2.7e-07     416     552 ..     302     433 ..     298     520 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3e-05
  Cellulose_synt  11 lkepplvtantvlsilavdypvekvscyvsddGa 44 
                       ep  v  +tvl+  ++dyp +k+ +y+ ddG 
      CTQ30479.1 136 YNEPLEVVRDTVLAAQCIDYPKDKMKIYLLDDGK 169
                     46888899************************95 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0021
  Cellulose_synt 181 hnkkaGamnalvrvsavlsnapfilnldcdhyinnskalreamcflldrelGkkvcyvqfpqrfdGidksdr.......yanrnvvffdinlral 268
                     ++ kaG +n     +  l+++  i  +dcdh             fl d+     ++ vq p  f   d+ +r         n+ ++f+    ++ 
      CTQ30479.1 191 KHAKAGNLNH----ALTLTQGELICVFDCDHVATRVFLQATVGGFLKDPM----LALVQTPHYFYSPDPFERnlsvgrnIPNEGMLFYGPIQQGN 277
                     4556666654....5579*************8776655555557999999....677777777777777666221111235777899999999** PP

  Cellulose_synt 269 dGiqGpvyvGtGcvfrrqal 288
                     d  +   + G+ +v+rr+al
      CTQ30479.1 278 DNWNATFFCGSCAVIRREAL 297
                     *****************998 PP

  == domain 3  score: 29.5 bits;  conditional E-value: 1.1e-10
  Cellulose_synt 416 GwiyGsvtedvltGfkmharGwrsvycvtkrdafkGsapinlsdrlhqvlrwalGsveiffsrnnalfagykkklkllerlaylnviiypftsif 510
                     G+   +vted  t  k+   Gw+s +     +   G a   l   + q  rwa G  +if   +n+lf    + l + +rl+yl +++y   +++
      CTQ30479.1 302 GFAVETVTEDAHTALKFQRLGWKSAFLDIPLA--AGLATERLVVHVIQRTRWARGMTQIFR-VDNPLFG---RGLTFQQRLCYLSAMLYYQFALP 390
                     456678******************99765555..5999999***************99975.5788875...59********************* PP

  Cellulose_synt 511 llvycilpalsllsgkfiv.kelsnlasiyllllflslivlav 552
                      +v+ + p   ll +  i+  + s ++s  l  lfl++ v + 
      CTQ30479.1 391 RVVFVTAPLAYLLFNLNIIySSASLIVSYALPHLFLAIYVGSR 433
                     ********77766665555055555555556688888876554 PP

>> PilZ  PilZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.2     8e-12     2e-08       1     101 [.     550     645 ..     550     647 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 8e-12
                 CSSSS-C..EEECEEEEEEETTEE.EEEEEEEEESSEEEEEEST-SS-TTSEEEEEEECECEEEEEEEEEEEEEECTCTTEEEEEEE.EEECHHHHHHH CS
        PilZ   1 qrRkekRlevpvsipvtleadege.lkgrliDiSlgGlairlpdeelalgdrvelklpldkdqelslpgrVvrvkpeedgerlGveF.ldldeeqrell 97 
                 q Rk  R  ++v ipv+++ + g   + +++D+S gG+++++pd +   +d  e++l  ++++ +s+p++ v  +++     l ++F +d++   r++l
  CTQ30479.1 550 QVRKTIR--IDVDIPVVIHYASGIvSRSHTADLSMGGCRVVAPDNRHLEDDIEEIELI-LQSGAISIPAQLVTSDER----FLRLKFdEDIPLSRRREL 641
                 78999**..***************666699*************666666666899999.99****************....88**************** PP

                 HHHH CS
        PilZ  98 irll 101
                 +r +
  CTQ30479.1 642 VRVV 645
                 9987 PP

>> TPPK_C  Thiamine pyrophosphokinase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2   0.00078         2      15      38 ..       4      27 ..       2      37 .. 0.87
   2 ?    9.0   0.4   0.00054       1.4      19      41 ..     494     517 ..     493     519 .. 0.88
   3 ?   -4.2   0.7         7   1.8e+04      24      29 ..     539     544 ..     531     545 .. 0.45
   4 ?   -3.9   0.1       5.9   1.5e+04      40      49 ..     673     682 ..     670     682 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00078
      TPPK_C 15 allllvlAaLvAvavallvspagq 38
                +l +l++ +L +vav ++++p+ +
  CTQ30479.1  4 SLFWLLALVLSPVAVLVVITPMDS 27
                789*****************9755 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00054
      TPPK_C  19 lvlAaLvAvavallvsp.agqsfl 41 
                 lv+A L+A++v++ ++  +g++++
  CTQ30479.1 494 LVVACLLALGVVVGIVRaIGHDYF 517
                 9****************7777876 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 7
      TPPK_C  24 LvAvav 29 
                 L+A+av
  CTQ30479.1 539 LAAIAV 544
                 222222 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 5.9
      TPPK_C  40 fldllidtwn 49 
                 +++l+++tw+
  CTQ30479.1 673 VFELFWLTWK 682
                 68999****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 5310.27
//
Query:       CTQ30480.1  [L=267]
Description: putative Cellulose synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.6e-38  130.3   0.0      1e-37  129.9   0.0    1.1  1  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
    5.8e-22   78.1   0.0    7.5e-22   77.7   0.0    1.1  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    1.3e-15   57.8   0.0    2.2e-15   57.0   0.0    1.4  1  AAA_31       AAA domain
      1e-10   41.5   1.2    3.2e-09   36.6   0.0    2.4  2  ParA         NUBPL iron-transfer P-loop NTPase
    2.1e-06   27.2   0.0      3e-06   26.7   0.0    1.2  1  ArsA_ATPase  Anion-transporting ATPase
    3.4e-06   26.7   0.1       0.01   15.3   0.0    2.1  2  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
    1.1e-05   24.9   0.0    2.8e-05   23.5   0.0    1.8  1  MipZ         ATPase MipZ
     0.0026   17.1   0.1     0.0054   16.1   0.1    1.5  1  VirC1        VirC1 protein
     0.0071   16.2   0.0      0.015   15.1   0.0    1.5  1  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.025   14.2   0.0    1.5  1  AAA_25       AAA domain
      0.021   15.2   0.1      0.035   14.5   0.1    1.7  1  AAA_16       AAA ATPase domain
      0.086   12.5   0.0       0.16   11.5   0.0    1.4  1  SRP54        SRP54-type protein, GTPase domain
       0.16   11.9   0.0       0.29   11.0   0.0    1.5  1  APS_kinase   Adenylylsulphate kinase


Domain annotation for each model (and alignments):
>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0   7.3e-41     1e-37       1     231 [.       1     243 [.       1     245 [. 0.88

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 7.3e-41
    CBP_BcsQ   1 mkvlalqGvRGGvGttsllaaLawalhelgesvlviDlspdnlLrlhFnvdieqregwaraeldgapwrqaaleyapgldllPfGelnveekenlqq.l 98 
                 m+++++   +GGvG+t+l+a La++l + g +vl++D+ ++n LrlhF v++++++g+++ +l+ ++w+q++l   +++ +lP+Ge++++++++ ++ l
  CTQ30480.1   1 MPLICVCSPKGGVGKTTLAANLAYSLARTGSKVLALDFDVQNALRLHFGVPLNDERGYVAKALELHDWSQCVLSAGSNIFVLPYGEVSEAQRQAFDEqL 99 
                 899999999************************************************************************************988746 PP

    CBP_BcsQ  99 aekaeallaalkelk.eqyrwillDlpagasaltrellaladlvllvvepdanchvrLhq...q.....al..paaellLiNqfeaasqlqqDllqlWl 186
                 +++++ l++ l++l  +     + D+p g+s+  ++l+ ladl+l  + +d+++   L++   q     al  ++ +++ iNq +   q+ +D+  l  
  CTQ30480.1 100 THNDHFLQRGLSALLnYPGLITIADMPPGPSPALKALTGLADLHLIPLLADTASMSTLAHvekQrltgaALnhKHGHYFVINQSDSRRQVSRDVTSLME 198
                 677777788898888345555588*********************999999998665543111311111442235689********************* PP

    CBP_BcsQ 187 qslrrllPlvihrDealaEalaakqPlgeyrpdslaaeevktLan 231
                 ++l ++l  vihrDe+++Ea a+++ + ++ + s+aa +++ +a+
  CTQ30480.1 199 EKLGERLLGVIHRDESVVEANASQKSILDFNASSAAAFDIEIMAK 243
                 ***99999********************************99997 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   5.5e-25   7.5e-22       1     128 []       4     225 ..       4     225 .. 0.86

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 5.5e-25
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 i+++s kGGvGKTtlaanLa +lar g +Vl++D+D+q  +  ++    nd++                                              
  CTQ30480.1   4 ICVCSPKGGVGKTTLAANLAYSLARTGSKVLALDFDVQNALRLHFGVPLNDERGyvakalelhdwsqcvlsagsnifvlpygevseaqrqafdeqlthn 102
                 79************************************55555544444544448888***************************************** PP

                 ...............................................CCHCCCHHHHHHCHCHHHH......EEEEEEEEESS...-TTCHHHHHHHHH CS
                 ...............................................xxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ...............................................dlkrllellealgkkkall....lkiagvvlnrvdgeneetllkealeelkq 102
                                                                d  +++ l+++ ++++  +       + +v+n  d++++  +   +l e+k 
  CTQ30480.1 103 dhflqrglsallnypglitiadmppgpspalkaltgladlhlipllaDTASMSTLAHVEKQRLTGAalnhKHGHYFVINQSDSRRQVSRDVTSLMEEK- 200
                 ***********************************************6667666665444443333555667899********955555555555543. PP

                 HCTS-EEEEEE--CCHCCCCHHTS-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA 103 rygvpvlgviprdeavaeapargepv 128
                  +g ++lgvi+rde+v+ea a+++++
  CTQ30480.1 201 -LGERLLGVIHRDESVVEANASQKSI 225
                 .4*****************9999875 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   1.6e-18   2.2e-15       3     160 ..       3     160 ..       1     172 [. 0.82

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 1.6e-18
      AAA_31   3 vIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielv..e 99 
                  I++   KGGvGKTT + nla++la++g kvL  D+D Q+++  ++g+  n+    + ++l e  + ++++  +  +n+ ++p   +++ea+ + +  +
  CTQ30480.1   3 LICVCSPKGGVGKTTLAANLAYSLARTGSKVLALDFDVQNALRLHFGVPLNDERGYVAKAL-ELHDWSQCVL-SAGSNIFVLPYG-EVSEAQRQAFdeQ 98 
                 699*********************************************9999989999985.7899999999.566889999843.4444444433014 PP

      AAA_31 100 lekkeeilkellekvkdeYDyi.iiDcpPsLglltenaLvasdsviipvqaeayaleGleql 160
                 l+++ + l++ l+++ +   +i i D+pP  +  ++     +d  +ip+ a+  ++++l+++
  CTQ30480.1  99 LTHNDHFLQRGLSALLNYPGLItIADMPPGPSPALKALTGLADLHLIPLLADTASMSTLAHV 160
                 45566778999999998877773559999988888777779********9999999988765 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   2.3e-12   3.2e-09       6      42 ..       4      40 ..       2      44 .. 0.96
   2 ?    3.3   0.4     0.035        49     176     245 ..     177     245 ..     120     246 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2.3e-12
        ParA  6 iavlSgKGGVGKStvavnlAlaLakkglkvgllDaDi 42
                i+v+S KGGVGK+t+a+nlA++La++g kv  lD D+
  CTQ30480.1  4 ICVCSPKGGVGKTTLAANLAYSLARTGSKVLALDFDV 40
                89**********************************9 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.035
        ParA 176 gfvcpkcgekteifgkgggeklaeelgvpllgeipldpeireasdegkplvlkepeseaakaleeiaekv 245
                 +fv ++++++ +  +++ ++ + e+lg +llg i  d++++ea+ ++k+++  + +s+aa  +e +a+k+
  CTQ30480.1 177 YFVINQSDSR-RQVSRDVTSLMEEKLGERLLGVIHRDESVVEANASQKSILDFNASSAAAFDIEIMAKKI 245
                 4555554444.44567778889999999999999999999999999999998888888777777777665 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.2e-09     3e-06       6      62 ..       7      63 ..       3     112 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.2e-09
                 EEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-STTTHHHHHHTS--BSS-EEETSSE CS
  ArsA_ATPase  6 vgGKGGVGKttvsaatavklsekgkkvllistDPAhslsDsfdqklgkeptkvkeNL 62
                  + KGGVGKtt++a +a+ l+++g kvl +  D    l+  f   l+ e   v + L
   CTQ30480.1  7 CSPKGGVGKTTLAANLAYSLARTGSKVLALDFDVQNALRLHFGVPLNDERGYVAKAL 63
                 578***************************999988888888877777666666555 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.6e-06      0.01       7      37 ..       9      39 ..       3      49 .. 0.87
   2 !    9.5   0.0   0.00043       0.6     188     245 ..     189     246 ..     158     252 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.6e-06
   Fer4_NifH  7 GkGGiGksttsqnlsaalaemgkkvlivGCD 37
                 kGG+Gk+t ++nl+ +la++g kvl +  D
  CTQ30480.1  9 PKGGVGKTTLAANLAYSLARTGSKVLALDFD 39
                59************************87666 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00043
   Fer4_NifH 188 dereliekfaeelgtkvlevvPrdeivrkaelrkktvieyapeseqakeyrelarkil 245
                   r++ + + e+lg ++l v+ rde v +a++ +k + +++ +s  a   + +a+ki 
  CTQ30480.1 189 VSRDVTSLMEEKLGERLLGVIHRDESVVEANASQKSILDFNASSAAAFDIEIMAKKIS 246
                 346777778899*********************************9999999999996 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     2e-08   2.8e-05       3      46 ..       4      47 ..       2     196 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2e-08
                EEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHH CS
        MipZ  3 ivlgnekGGsGksttavhvavaLlkkGarvaaidldlrqrtlar 46
                i +   kGG Gk+t a  +a +L+++G +v a+d+d++ +   +
  CTQ30480.1  4 ICVCSPKGGVGKTTLAANLAYSLARTGSKVLALDFDVQNALRLH 47
                778899******************************97654433 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.9e-06    0.0054       1      40 [.       1      40 [.       1      49 [. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.9e-06
       VirC1  1 mklitfcslkGGaGkttalmglcsalasdgkrvalfeade 40
                m li +cs kGG Gktt    l  +la  g +v  ++ d 
  CTQ30480.1  1 MPLICVCSPKGGVGKTTLAANLAYSLARTGSKVLALDFDV 40
                789***************************9997776664 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.1e-05     0.015       4      33 ..      12      41 ..      10      50 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
      CLP1_P  4 dsGKSTlarlLlNyalrkgrkpvyvDlDvG 33
                 +GK+Tla++L+  ++r g k++ +D Dv 
  CTQ30480.1 12 GVGKTTLAANLAYSLARTGSKVLALDFDVQ 41
                59**************************95 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.8e-05     0.025      41      65 ..      10      35 ..       4      49 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
      AAA_25 41 apgtGKttlaldlalava.tGkpwlg 65
                 +g+GKttla +la+++a tG+++l 
  CTQ30480.1 10 KGGVGKTTLAANLAYSLArTGSKVLA 35
                58****************99997765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   2.5e-05     0.035      25     123 ..       3      99 ..       1     211 [. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.5e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde....aesaeleawrekleeala.....avpelaga 114
                  ++++s   GvGK++l+  l+ +l ++g  +l+ ++d            +al r ++   l+de    a++ el +w++  ++a +     + +e++ a
  CTQ30480.1   3 LICVCSPKGGVGKTTLAANLAYSLARTGSKVLALDFDVQ----------NAL-RLHFGVPLNDErgyvAKALELHDWSQCVLSAGSnifvlPYGEVSEA 90 
                 577888889*******************99*99999999..........333.3333333333333335566666666643333336666655555555 PP

      AAA_16 115 easrllell 123
                 +++++ e+l
  CTQ30480.1  91 QRQAFDEQL 99 
                 554444444 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.16      11      38 ..      12      39 ..       3      43 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                TSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54 11 GaGKTttlaKLaallkkegkkvllvaaD 38
                G+GKTt +a La  l + g kvl    D
  CTQ30480.1 12 GVGKTTLAANLAYSLARTGSKVLALDFD 39
                8********************9976666 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021      0.29      11      52 ..      11      51 ..       2     112 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
                TTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SS CS
  APS_kinase 11 sgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfs 52
                 g GK+t+a +l+ +L ++g +v  Ld d v + L    g  
  CTQ30480.1 11 GGVGKTTLAANLAYSLARTGSKVLALDFD-VQNALRLHFGVP 51
                588************************88.455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 1965.61
//
Query:       CTQ30481.1  [L=179]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-11   42.7  19.8      3e-09   37.3  19.8    2.2  1  CBP_BcsO  Cellulose biosynthesis protein BcsO
  ------ inclusion threshold ------
       0.43   11.0   3.3       0.54   10.7   3.3    1.3  1  CCDC53    Subunit CCDC53 of WASH complex


Domain annotation for each model (and alignments):
>> CBP_BcsO  Cellulose biosynthesis protein BcsO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3  19.8   3.3e-13     3e-09       1     201 []       1     179 []       1     179 [] 0.62

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 3.3e-13
    CBP_BcsO   1 mkkyddvqrfkdkvqikdidfkdlsgdvlaselvvWPivkqllrnqtgddtlsaassvdiaqPvPvsatvlsapasprrvlPssslnvnadqsraaqis 99 
                 m++ydd+qrf++k++ ++++f+dls++    e   W i++ql        +l+   sv+   P P s      pa   r + +++   ++ ++  +  s
  CTQ30481.1   1 MNHYDDLQRFQEKTRTQNLNFQDLSSQAATREHGDWAILNQLNPGAEKPSSLALGGSVS--APLPQS-----VPADLFRQVEAAVAAAPTSDPVVSAAS 92 
                 899***************************************98444444444444444..344432.....233333333333333333333333333 PP

    CBP_BcsO 100 lfnallaslasaesvsiiaPvtiasr.ePvsapqpaaltietvppatvrphplasaaavseasaaseasrfkklfskktedeiasvskttllkPlleki 197
                      +a  +s+  v+  a  +++ r eP   p p+   i +  pa + p  +a  +a++       a  + +lf+ k  + +a+  k+  lk lle+i
  CTQ30481.1  93 -----AAPATSQPVVETAAAAPEPVRqEPAPTPAPS---IPASEPAMAPPPRMAPRPAPA-------AENYAHLFAAKSAEPVAK-NKDQPLKSLLERI 175
                 .....3333333444444444444444454443332...444445554444444444444.......78899****999887765.68889******** PP

    CBP_BcsO 198 alCr 201
                 a+Cr
  CTQ30481.1 176 ATCR 179
                 ***9 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.3     6e-05      0.54      46     135 ..      65     158 ..       5     167 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6e-05
      CCDC53  46 Sipgleeveaeaaeastsddn.....................aarkgppppppsseaaaaaaqaeeasqaeesaeeeaeeqeesesknvltvkdDprya 123
                 S+p                 +                     aa+++p++++p+ e+aaaa+++ ++++a++ a++ +++++  +++++++ +  p  +
  CTQ30481.1  65 SVP-----------------AdlfrqveaavaaaptsdpvvsAASAAPATSQPVVETAAAAPEPVRQEPAPTPAPSIPASEPAMAPPPRMAPRPAPAAE 146
                 444.................0333333333333333334566888888899999999999999999999999999999888887777999999999999 PP

      CCDC53 124 kYfkmlklgVPe 135
                 +Y  +++    e
  CTQ30481.1 147 NYAHLFAAKSAE 158
                 998887765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 1291.40
//
Query:       CTQ30482.1  [L=59]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 493.43
//
Query:       CTQ30483.1  [L=337]
Description: dipeptide transporter; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-32  111.0   0.0    8.5e-32  110.5   0.0    1.2  1  ABC_tran     ABC transporter
    3.6e-19   69.1   0.3    7.3e-19   68.1   0.3    1.6  1  oligo_HPY    Oligopeptide/dipeptide transporter, C-terminal r
     0.0025   17.5   0.0     0.0045   16.8   0.0    1.3  1  IstB_IS21    IstB-like ATP binding protein
     0.0053   16.6   0.1        1.2    8.9   0.0    2.2  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
     0.0062   16.0   0.0      0.012   15.1   0.0    1.5  1  SMC_N        RecF/RecN/SMC N terminal domain
     0.0087   16.5   0.0      0.014   15.8   0.0    1.5  1  AAA_16       AAA ATPase domain
     0.0087   16.3   1.2      0.025   14.9   1.2    1.9  1  AAA_22       AAA domain
  ------ inclusion threshold ------
      0.013   15.4   0.1      0.027   14.4   0.1    1.4  1  RsgA_GTPase  RsgA GTPase
      0.028   14.2   0.2      0.054   13.3   0.2    1.4  1  AAA_29       P-loop containing region of AAA domain
       0.21   11.2   0.0       0.38   10.4   0.0    1.3  1  ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-bindi
       0.22   11.9   0.7       0.33   11.3   0.7    1.2  1  Tub_N        Tubby N-terminal
       0.29   10.4   0.5          1    8.6   0.2    1.8  2  ATPase       KaiC


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.0   5.7e-35   8.5e-32       1     136 [.      38     189 ..      38     190 .. 0.96

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 5.7e-35
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS..--S-TTSBHHHH...........HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxx..xxxxxxxxxxxx...........xxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqe..pqlfpeltvren...........esde 83 
                 l+ vs++l++g+++a+vGe+G+GKStL +ll+  + pt Ge+ ++g+dl +   q  +  r++i++++q+   +l+p+++v++             +++
  CTQ30483.1  38 LDGVSFTLERGKTLAVVGESGCGKSTLGRLLTMIEIPTGGELYYQGQDLLKhdpQAQKLRRQKIQIVFQNpyGSLNPRKKVGQIleepllinsslSKEQ 136
                 789*********************************************9998999999************8889*****9999999********99999 PP

                 CHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  84 eiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 + ekal+ +  ++lk+++ ++ p+ +SgGq+qr+a+ar l+ +p+++++DEp 
  CTQ30483.1 137 RREKALAMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPV 189
                 9999999999999999************************************7 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.3   4.9e-22   7.3e-19       1      65 []     241     306 ..     241     306 .. 0.97

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 4.9e-22
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekd.klekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE+g+++++f++p+HPYT+aLl+++prl++ ++ +  k+ ge ps+ + + GC F+ RC+ +   C
  CTQ30483.1 241 VEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRrERIKLTGELPSPLNPPPGCAFNARCRRRFGPC 306
                 8********************************99999**********************998887 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     3e-06    0.0045      31      89 ..      31      89 ..      16     105 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3e-06
   IstB_IS21 31 dkrkvkeLatlsf.iekkenivllGpsGvGKshlaialgveavraglsvlfvrvedLvee 89
                 +r vk+L + sf +e+ + ++++G sG GKs l   l +  + +g + +++  +dL+++
  CTQ30483.1 31 PERLVKALDGVSFtLERGKTLAVVGESGCGKSTLGRLLTMIEIPTGGELYYQG-QDLLKH 89
                6899*********458899**************************99987764.566554 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0082        12       3      22 ..      52      71 ..      51      82 .. 0.88
   2 !    8.9   0.0   0.00079       1.2     232     302 ..     157     225 ..      99     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0082
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                +++G  g+GKS+L ++l ++
  CTQ30483.1 52 AVVGESGCGKSTLGRLLTMI 71
                689************99766 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00079
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSplll 302
                 + ++ +S G+++ +a++  l  ++   ++++ DEp + L+ ++ + +l l+ +l++  g   ++ +H+ +++
  CTQ30483.1 157 RYPHMFSGGQRQRIAIARGLMLDP---DVVIADEPVSALDVSVRAQVLNLMMDLQQdLGLSYVFISHDLSVV 225
                 556677889988877777777777...9********************99977777699*********9886 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.9e-06     0.012      26     209 ..      50     233 ..      35     243 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.9e-06
                 EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevs 124
                   a+vG+ G+GKs l   +  ++   +  +l   + +dl+++  + +++ + +++i+f+n+  +l+ +k+  +i  +    ++    + +++ + ++  
  CTQ30483.1  50 TLAVVGESGCGKSTLGRLL-TMIEIPTGGELY-YQGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINS---SLSKEQRR-EKAL 142
                 5689*********998877.455556666665.5778999888999***************9995555555555544444444...23333333.3333 PP

                 HHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE-SSHHHCCC-.SCEE CS
                 xxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xxxx RF
       SMC_N 125 ellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivislreemleka.dklv 209
                  +++++g++ e       ++SgG+++ +a+a      + +p  +++ De  +aLD + +++v +l+   +++    ++ is++  ++e+  d+++
  CTQ30483.1 143 AMMAKVGLKTEhydryphMFSGGQRQRIAIARG---LMLDPD-VVIADEPVSALDVSVRAQVLNLMMDLQQDlgLSYVFISHDLSVVEHIaDEVM 233
                 455666666666666666********9999976...466776.5788****************99998887755677888988888887634444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.2e-06     0.014      23      89 ..      47     110 ..      32     213 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.2e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde..a 89 
                 r+  + ++GesG+GKs+l r l   +e   g  l+ + ++l   +  ++ aq l r++ ++ + ++   
  CTQ30483.1  47 RGKTLAVVGESGCGKSTLGRLLT-MIEIPTGGELYYQGQDL---LKHDPQAQKL-RRQKIQIVFQNpyG 110
                 347899************99888.45544344444444444...4446677777.55666666666443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.2   1.7e-05     0.025       5      28 ..      48      71 ..      45     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlleq 28
                 + l+v+GesG+GK+tl r l++ 
  CTQ30483.1 48 GKTLAVVGESGCGKSTLGRLLTMI 71
                56799**************99875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   1.8e-05     0.027      90     119 ..      38      68 ..      24      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.8e-05
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHH CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinal 119
                  l+ ++  l+  kt ++vG+SG GKStL   l
   CTQ30483.1  38 LDGVSFTLERgKTLAVVGESGCGKSTLGRLL 68 
                  56667777777***************97666 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   3.6e-05     0.054      13      38 ..      39      64 ..      36      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.6e-05
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTl 38
                dg ++++++  +  ++G+sG GKSTl
  CTQ30483.1 39 DGVSFTLERGKTLAVVGESGCGKSTL 64
                67788888555999***********8 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00026      0.38       3      31 ..      36      65 ..      35      74 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
                 HHHHHH.S-EBTT-EEEEEESTTSSHHHHH CS
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  3 rvlDal.fpivqGqrtlipgafgvGktvis 31
                 ++lD + f++ +G++++++g++g+Gk+++ 
   CTQ30483.1 36 KALDGVsFTLERGKTLAVVGESGCGKSTLG 65
                 677764499******************986 PP

>> Tub_N  Tubby N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.7   0.00022      0.33       8      52 ..      92     135 ..      91     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00022
       Tub_N   8 kKQrkKRqEpLMVqaNpDarlrrrrprrreeqaPLvesqlsvsss 52 
                 + Q+ +Rq ++ V  Np ++l +r++    ++ PL++  +s s++
  CTQ30483.1  92 QAQKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN-SSLSKE 135
                 56999*******************************99.555443 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2   0.00069         1      16      37 ..      45      66 ..      34      77 .. 0.85
   2 ?   -0.8   0.0      0.54   8.1e+02     139     164 ..     195     221 ..     187     243 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00069
      ATPase 16 ipegrvvlitGepGtGKtifal 37
                + +g++  ++Ge+G+GK++++ 
  CTQ30483.1 45 LERGKTLAVVGESGCGKSTLGR 66
                67999**************985 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.54
      ATPase 139 vaReilrqlvrvl.kklgvTailvsek 164
                  +R+++ +l++ l ++lg+  +++s  
  CTQ30483.1 195 SVRAQVLNLMMDLqQDLGLSYVFISHD 221
                 689999999999988999999999974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2462.96
//
Query:       CTQ30484.1  [L=327]
Description: dipeptide transporter; ATP-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-28   98.1   0.0      8e-28   97.7   0.0    1.2  1  ABC_tran       ABC transporter
    1.7e-19   70.1   0.1    2.8e-19   69.4   0.1    1.4  1  oligo_HPY      Oligopeptide/dipeptide transporter, C-terminal
    8.5e-07   28.6   0.0    1.3e-06   28.0   0.0    1.3  1  SMC_N          RecF/RecN/SMC N terminal domain
    1.9e-06   27.9   0.1    2.1e-05   24.5   0.0    2.0  2  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
     0.0052   17.1   1.8        1.6    9.0   0.1    2.2  2  AAA_22         AAA domain
  ------ inclusion threshold ------
      0.087   11.6   0.2       0.25   10.1   0.2    1.8  1  ABC_ATPase     Predicted ATPase of the ABC class
       0.11   12.8   0.5       0.36   11.2   0.5    1.9  1  AAA_16         AAA ATPase domain
       0.19    9.8   0.2       0.26    9.3   0.2    1.1  1  Herpes_ori_bp  Origin of replication binding protein
        0.2   11.4   0.0       0.38   10.5   0.0    1.4  1  AAA_29         P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0     4e-31     8e-28       2     136 ..      24     181 ..      23     182 .. 0.91

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 4e-31
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS..--S-TTSBHHHH........... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx..xxxxxxxxxxxx........... RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlke....qeleslrkeigvlpqe..pqlfpeltvren........... 79 
                 +++s ++k+ge+v+ivGe+G+GKS    +++gl +      +++++++g+dl++    ++++ + +e+++++q+  ++l+p  tv+ +           
  CTQ30484.1  24 DRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYpgrvMADKLEFNGRDLQRisekERRQLVGAEVAMIFQDpmTSLNPCFTVGYQimeaikvhqgg 122
                 789******************************99756666666699999999999988899999*********9999******99999********** PP

                 ...HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                    ++++++ ++l+ +g+++ ++++++  p++LSgG+ qrv++a+a++++pkll++DEpt
  CTQ30484.1 123 nkqTRRQRAIDLLNLVGIPD-PASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPT 181
                 87777777999999999999.889999********************************9 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.1   1.4e-22   2.8e-19       1      65 []     233     297 ..     233     297 .. 0.99

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 1.4e-22
   oligo_HPY   1 vErgpssklfdeplHPYTkaLlrsvprldrekdklekikgeapslerldeGCpFapRCpfaleeC 65 
                 vE+g+++++f+ p+HPYT+aLlr++p++ + k +l++++g +p   ++++GC+ +pRCp+a+++C
  CTQ30484.1 233 VETGDAKDIFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPNGCLLNPRCPYATDKC 297
                 8**************************************************************** PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   6.8e-10   1.3e-06      25     212 ..      34     228 ..      18     235 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 6.8e-10
                 SEEEEEESTTSSHHHHHHHHHHHC...TT...TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...xxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvL...Ger..sakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkev 118
                 ++  ivG+ GSGKs    Ai+ ++   G    ++ ++  ++l+++ ++ ke++++  aev+++f+++  +    ++ +++  ++++  + + +  +k+ 
  CTQ30484.1  34 EVVGIVGESGSGKSVSSLAIMGLIdypGRVmaDKLEFNGRDLQRI-SE-KERRQLVGAEVAMIFQDPMTS---LNPCFTVGYQIMEAIKVH-QGGNKQT 126
                 5778**********8777775443222222102224566666664.44.79999**********999998...556666666666665533.3334444 PP

                 -HHHHHHHHHCTT-STT.........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHH..HHCTTSEEEEE-SSHHHCCC-. CS
                 xxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx. RF
       SMC_N 119 tkkevsellesagiske.........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellk..eksknaQfivislreemleka. 205
                 +++   +ll+ +gi            +LSgG  + v++a+ +A    +p+ l + De   aLD +  +++ ell   ++++n+ ++ i+++  ++++a 
  CTQ30484.1 127 RRQRAIDLLNLVGIPDPasrldvyphQLSGGMSQRVMIAMAIAC---RPK-LLIADEPTTALDVTIQAQIIELLLdlQQQENMALVLITHDLALVAEAa 221
                 45555566666666554556666666***********9999875...555.7899*********99999999887567788899999****99998883 PP

                 SCEEEEE CS
                 xxxxxxx RF
       SMC_N 206 dklvgvt 212
                 +k++ ++
  CTQ30484.1 222 HKIIVMY 228
                 5555444 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.11   2.3e+02       2      13 ..      36      47 ..      35      83 .. 0.85
   2 !   24.5   0.0   1.1e-08   2.1e-05     182     302 ..     125     217 ..     115     218 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.11
      AAA_21  2 nvliGpNgsGKS 13
                 +++G  gsGKS
  CTQ30484.1 36 VGIVGESGSGKS 47
                689********9 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 1.1e-08
      AAA_21 182 krllqrlvrslklveielsdlgegeeliasvderlrergvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrlle 280
                 ++++qr ++ l+lv+i++ ++                          + ++ +++lS G+ +   ++ a++ ++   +ll+ DEp + L+  +++ ++e
  CTQ30484.1 125 QTRRQRAIDLLNLVGIPDPAS--------------------------RLDVYPHQLSGGMSQRVMIAMAIACRP---KLLIADEPTTALDVTIQAQIIE 194
                 567777888888888888888..........................57899********99955555555555...89******************** PP

      AAA_21 281 llkelsr.ngaQviltTHSplll 302
                 ll +l++ ++  ++l TH+  l+
  CTQ30484.1 195 LLLDLQQqENMALVLITHDLALV 217
                 **55555599*********9997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.3    0.0026       5.2       8      21 ..      36      49 ..      29      57 .. 0.82
   2 !    9.0   0.1   0.00082       1.6      51     128 ..     125     210 ..     103     216 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0026
      AAA_22  8 lvvtGesGtGKTtl 21
                + ++GesG+GK+++
  CTQ30484.1 36 VGIVGESGSGKSVS 49
                569*********98 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00082
      AAA_22  51 tsskdllrellralglelka.....erlsseell.ealeqalraravielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLv 128
                  ++++ + +ll+ +g +  a     ++++++  + +++  a+  + +++lli DE    l+   +++++e L +l+   + +++l+L+
  CTQ30484.1 125 QTRRQRAIDLLNLVGIPDPAsrldvYPHQLSGGMsQRVMIAMAIACRPKLLIADEPTTaLDvtiQAQIIELLLDLQQ--QENMALVLI 210
                 378888889999999988886666655555555544444444444338*******9999989777************..*******98 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00013      0.25     320     413 ..     151     229 ..     127     257 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00013
                 ESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEET CS
  ABC_ATPase 320 tedASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilmee 413
                  ++ SG +sq + i+ a+  + kll+ DE t+A    i+ + ++ l+  +++                ++ ++l++  +    + A+++i+m +
  CTQ30484.1 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLDLQQQE---------------NMALVLITHDLALVAEAAHKIIVMYA 229
                 5677*****************************99999666666666544444...............44444444444444444444444443 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   0.00018      0.36      20      89 ..      31      98 ..      20     270 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde....a 89
                ++g  e+v ++GesG+GKs    +++  +    g +++ k + +++++  + + +   r++l+ ++ ++    +
  CTQ30484.1 31 KQG--EVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMADKLEFNGRDL--QRISEKE-RRQLVGAEVAMifqdP 98
                444..7899***********999999988888.666555555554442..3477777.6688877777655541 PP

>> Herpes_ori_bp  Origin of replication binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2   0.00013      0.26     183     214 ..     181     212 ..     167     235 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00013
  Herpes_ori_bp 183 viAmDAtvnaqlvdllaalrgdenihvivsey 214
                      A+D t++aq+++ll  l+ +en++++  ++
     CTQ30484.1 181 TTALDVTIQAQIIELLLDLQQQENMALVLITH 212
                    579***********************997765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00019      0.38      18      37 ..      29      48 ..      20      63 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00019
      AAA_29 18 eidlkgatlltGpsGsGKST 37
                ++++ +++ ++G+sGsGKS 
  CTQ30484.1 29 SVKQGEVVGIVGESGSGKSV 48
                455444889*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2439.67
//
Query:       CTQ30485.1  [L=300]
Description: dipeptide transporter; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-30  105.8  17.2    2.3e-30  105.7  12.5    2.2  2  BPD_transp_1  Binding-protein-dependent transport system inne
    2.4e-16   59.4   0.6    2.4e-16   59.4   0.6    3.7  4  OppC_N        N-terminal TM domain of oligopeptide transport 
  ------ inclusion threshold ------
      0.096   12.8   0.1      0.096   12.8   0.1    3.0  4  DUF624        Protein of unknown function, DUF624


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.021   1.2e+02     155     176 ..      32      53 ..       8      56 .. 0.71
   2 !  105.7  12.5   3.8e-34   2.3e-30       1     184 [.     116     299 ..     116     300 .] 0.98

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.021
  BPD_transp_1 155 nggvlalviavlllnlvadilq 176
                   +++ l++v++++++ ++a++l+
    CTQ30485.1  32 AVVGLVYVVVMIVIAVFANFLA 53 
                   3566777778888877777765 PP

  == domain 2  score: 105.7 bits;  conditional E-value: 3.8e-34
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvfvilsilghlilp.viillllsaapyvrlirraalrslpkdlveaaralGasrwq 96 
                   g++lG++a+ ++++++d +++++++++l+lPs++la++lv       i+g +i    ++l+++ ++ yvrl+r+a+l ++++d+v a+r+ Ga+  +
    CTQ30485.1 116 GVVLGLVAG-YFGGVVDSIIMRVVDIMLALPSLLLALVLV------AIFGPSIVNaSLALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMR 205
                   89*******.******************************......9***8888879**************************************** PP

  BPD_transp_1  97 ifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis..........nggvlalviavlllnlvadilqrlldprv 183
                    ++  +lPn l p+i ++ l f +++ + ++l flg    +g +  ++++g ++s  +           ++ +a+++ vl++nl  d l ++ldp++
    CTQ30485.1 206 QMFVNILPNCLAPLIVQASLGFSNAILDMAALGFLG----MGAQPPTPEWGTMLSDVLqfaqsawwvvTFPGVAILLTVLAFNLMGDGLRDALDPKL 298
                   ************************************....***************999**************************************9 PP

  BPD_transp_1 184 r 184
                   +
    CTQ30485.1 299 K 299
                   7 PP

>> OppC_N  N-terminal TM domain of oligopeptide transport permease C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.6     4e-20   2.4e-16       1      51 []      17      69 ..      17      69 .. 0.88
   2 ?   -2.1   2.3      0.65   3.9e+03      20      32 ..     107     119 ..      98     134 .. 0.59
   3 !    8.4   1.2   0.00036       2.1      22      37 ..     147     162 ..     146     176 .. 0.85
   4 ?   -2.8   0.1       1.1   6.5e+03      20      27 ..     274     281 ..     264     288 .. 0.59

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 4e-20
      OppC_N  1 slwqdawrrFkrNklAvvglvilllllliaifaPliaPydp.qdliqn.llpP 51
                +++q++w+ FkrNk Avvglv ++++++ia+fa ++aPy+p  ++++  l+pP
  CTQ30485.1 17 TPLQEFWHYFKRNKGAVVGLVYVVVMIVIAVFANFLAPYNPaDQFRDSlLAPP 69
                79**************************************9733333347777 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.65
      OppC_N  20 lvilllllliaif 32 
                 lv++l l+l +++
  CTQ30485.1 107 LVVVLSLILGVVL 119
                 3444444444433 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00036
      OppC_N  22 illlllliaifaPlia 37 
                 +ll+l+l+aif+P i+
  CTQ30485.1 147 LLLALVLVAIFGPSIV 162
                 5899*********995 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 1.1
      OppC_N  20 lvilllll 27 
                  +ill++l
  CTQ30485.1 274 VAILLTVL 281
                 34444433 PP

>> DUF624  Protein of unknown function, DUF624
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.6e-05     0.096      43      76 ..      17      50 ..       1      51 [. 0.68
   2 ?   -1.9   1.3      0.65   3.9e+03       7      22 ..     107     122 ..     101     128 .. 0.72
   3 ?   -1.5   0.4      0.46   2.7e+03      13      25 ..     149     161 ..     133     169 .. 0.74
   4 ?   -3.0   0.6       1.4   8.4e+03       8      20 ..     266     278 ..     262     286 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
      DUF624 43 sifktFweaYKknfkksnllglillliglillvd 76
                 ++++Fw+++K+n    + l +++++i+++++ +
  CTQ30485.1 17 TPLQEFWHYFKRNKGAVVGLVYVVVMIVIAVFAN 50
                5799*********666666666666666666655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.65
      DUF624   7 lwllftllglvvfglf 22 
                 l ++++l+++vv+gl 
  CTQ30485.1 107 LVVVLSLILGVVLGLV 122
                 5567777777777765 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.46
      DUF624  13 llglvvfglfPAt 25 
                 l++++v  ++P++
  CTQ30485.1 149 LALVLVAIFGPSI 161
                 6677777777776 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 1.4
      DUF624   8 wllftllglvvfg 20 
                 w+++t+ g++++ 
  CTQ30485.1 266 WWVVTFPGVAILL 278
                 6666655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       940  (0.052429); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2217.55
//
Query:       CTQ30486.1  [L=339]
Description: dipeptide transporter; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-46  156.4  15.5    6.5e-46  156.4  15.5    1.8  2  BPD_transp_1  Binding-protein-dependent transport system inne


Domain annotation for each model (and alignments):
>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2     0.053   9.5e+02      27      44 ..      10      61 ..       4      75 .. 0.59
   2 !  156.4  15.5   3.6e-50   6.5e-46       1     184 [.     114     336 ..     114     337 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.053
  BPD_transp_1 27 llslPsfvlaillvlvf..................................v 44
                  +l +P+f+ + ll+++f                                   
    CTQ30486.1 10 GLVIPTFIGITLLTFAFvhmipgdpvmimagergisperhaqllaemgldkP 61
                  6678888866666655555556666666666666666666666555555553 PP

  == domain 2  score: 156.4 bits;  conditional E-value: 3.6e-50
  BPD_transp_1   1 gillGilaalnrnkkldkllrpliivllslPsfvlaillvlvf........................................vilsilghlilpvi 57 
                   gi++G+laa++r++++d+   +l  +++s+P+f+++++l++++                                         ++++l h+ilp+i
    CTQ30486.1 114 GIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVsvqlnltpvsgrisdtvflddtlpltgfmlidtaiwgeqgDFIDALMHMILPAI 210
                   89**************************************999****************************************9999********** PP

  BPD_transp_1  58 illllsaapyvrlirraalrslpkdlveaaralGasrwqifrkvvlPnalppiitglilafggllggavlleflgswpGlgtllleailgydyseis 154
                   +l+++ +a +vr++r+++l++l +d++++ara+G++r ++++ ++l+na+ p++t ++l++g ll ga+l+e+++swpGlg++l++a++ +dy+  +
    CTQ30486.1 211 VLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIVIHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQ 307
                   ************************************************************************************************* PP

  BPD_transp_1 155 nggvlalviavlllnlvadilqrlldprvr 184
                    ggvl ++ +++l+nl++d+l+ +++pr+r
    CTQ30486.1 308 -GGVLLVATMIILVNLLVDLLYGVVNPRIR 336
                   .****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2769.03
//
Query:       CTQ30487.1  [L=535]
Description: dipeptide transporter; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-109  365.8   8.9   2.9e-109  365.5   8.9    1.1  1  SBP_bac_5  Bacterial extracellular solute-binding proteins, f


Domain annotation for each model (and alignments):
>> SBP_bac_5  Bacterial extracellular solute-binding proteins, family 5 Middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  365.5   8.9  1.6e-113  2.9e-109       1     375 [.      73     453 ..      73     455 .. 0.95

  Alignments for each domain:
  == domain 1  score: 365.5 bits;  conditional E-value: 1.6e-113
                 SEEESSEEEEEEEETTTTEEEEEE-TT-B-TTSS......B-SHHHHHHHHHHHHTGGGHCTTHHHHHC........TCTEEEEEEEETTEEEEEESSE CS
   SBP_bac_5   1 evvpaLAeswwevsdDgktytfkLRkgvkFsDGt......pltAeDvvfsferlldpdtasgyasllee........dqdikkveavddytvrftlkkp 85 
                 ev+p+LAe+ wevs+Dgktytf+LR+gvk++D +      +l+A+Dvvfsf+r ++ ++++   s  ++         + i +v++vdd+tv+f+l++p
  CTQ30487.1  73 EVIPGLAEK-WEVSADGKTYTFHLRQGVKWQDNKdfkptrDLNADDVVFSFDRQKNTNNPYHKVSGGSYeyfegmglPDLISEVKKVDDNTVQFVLTRP 170
                 689******.7**********************99*************************999999888999*************************** PP

                 TTTTTTHCHHHHHHHGC...CHTCTCTTTTTGTTTSE-BSSSEEEEEEETTTEEEEEE-TTSTTTSCSSSSEEEEEE-.SHHHHHHHHHTTSSSEEEST CS
   SBP_bac_5  86 nalfltllaavpasiak...kaaekeddkdkdtnekpvgtGPYklkefkpgqkivlernpdYwgggkpkldriefkvipdsdaraaalqsGeiddvaep 181
                  a+fl+ la+  asi +   +    ++ + ++ + +p+gtGP++l +++++++i ++++p Yw g kpk+dr++f++ pd+++r a+lq++e++++ +p
  CTQ30487.1 171 EAPFLADLAMDFASILSkeyADNMLKAGTPEKVDLNPIGTGPFQLLQYQKDSRILYKAFPGYW-GTKPKIDRLVFSITPDASVRYAKLQKNECQVMPYP 268
                 **9888888888888887774444566679999******************************.*********************************** PP

                 TCCTHCHHHHHTTEEEEEEEEEEEEEEEEETTTSTGGGSHHHHHHHHHHS-HHHHHHHCTTTSSEEESSSSTTTSTTCCSCHCCCSHHSHHHHHHHHHH CS
   SBP_bac_5 182 ppsdieqlkeakglkvlyespgggvtylafNtkkppfddkrvRqAlsyAiDreeivkavlegyatpansllppsspgadeeykpaykaydpekAkklLk 280
                 +p+di+++ke+k++++  e+pg++v+yl+fNt+k+p+dd++vRqAl+yA+++e+i+kav++g +++a++l+pp+++g++++ k++  +ydpekAk+lLk
  CTQ30487.1 269 NPADIARMKEDKNITL-LEQPGLNVGYLSFNTEKKPLDDVKVRQALTYAVNKEAIIKAVYQGAGQAAKNLIPPTMWGYNDDVKDY--TYDPEKAKQLLK 364
                 ****************.****************************************************************9997..78********** PP

                 HTT-BCSSTSCEETCEEEEEEEEETTSHHHH.HHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHCTTESEEEEEEECTTSTTHHHHHHHHSTTCT CS
   SBP_bac_5 281 eaGykdgdggglrekklkltlllasgspaek.aiaeliqqqlkkiGikvevktvdwaatylervkdgdfdmillgwgadypdpdnflnpflsssga 375
                 eaG+++g+   l      + + ++  ++++  ++ae+iq++++kiG+++++ t++w  +yl+r+k+g+++ +++gw++d++dpdnf+ +++s+++a
  CTQ30487.1 365 EAGLEKGFTIDL------WAMPVQRPYNPNArRMAEMIQADWAKIGVQAKIVTYEW-GEYLKRAKAGEHQSVMMGWTGDNGDPDNFFATLFSCAAA 453
                 ********9776......99988888777777************************.***********************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4028.92
//
Query:       CTQ30488.1  [L=464]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-35  120.2  14.2    4.6e-09   36.8   0.1    4.8  6  Ank_2       Ankyrin repeats (3 copies)
    8.1e-29   99.3   6.4    9.6e-09   35.3   0.1    6.3  6  Ank_5       Ankyrin repeats (many copies)
    2.1e-26   92.0   0.6    0.00024   21.6   0.0    7.4  8  Ank_4       Ankyrin repeats (many copies)
    2.9e-22   76.3   0.5       0.33   11.7   0.0    8.9  9  Ank_3       Ankyrin repeat
    9.2e-20   70.1  13.5     0.0001   22.6   0.1    8.1  7  Ank         Ankyrin repeat
  ------ inclusion threshold ------
          3    7.9   5.1          7    6.7   0.6    2.8  2  PSII_Ycf12  Photosystem II complex subunit Ycf12


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.4e-08   7.1e-05      17      82 ..      14      85 ..       3      86 .. 0.78
   2 !   36.8   0.1   1.5e-12   4.6e-09       3      82 ..      29     119 ..      27     120 .. 0.82
   3 !   16.7   0.0   2.8e-06    0.0084      24      64 ..      85     134 ..      81     148 .. 0.71
   4 !   31.9   0.1     5e-11   1.5e-07       7      80 ..     194     279 ..     186     282 .. 0.82
   5 !   30.7   0.1   1.2e-10   3.7e-07      11      82 ..     266     347 ..     261     348 .. 0.82
   6 !   24.4   0.4   1.1e-08   3.4e-05       1      78 [.     289     373 ..     289     378 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.4e-08
       Ank_2 17 l.egadpnkngktaLh.yAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinlk 82
                + +g+  +  ++t  + +A+k++   ++ ++l++      +d++g + L++Aa +++ ++v+lLl++ a++nl+
  CTQ30488.1 14 MlAGCQSE--EETSQFlLACKYDAPATIAAMLDNgidvdgQDKTGLSGLMVAAAENRRDVVELLLKRRAKPNLQ 85
                34666654..45665659999998889*****988786666699*********************889999986 PP

  == domain 2  score: 36.8 bits;  conditional E-value: 1.5e-12
       Ank_2   3 lAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsgh.leivklLlekgadinlk 82 
                 lA+k++++ ++  +l +g d++  + +g++ L++Aa ++ +++v+lLl+       ++++g t+L++Aa  g+ + i+  Ll+ ga++n++
  CTQ30488.1  29 LACKYDAPATIAAMLdNGIDVDgqDkTGLSGLMVAAAENRRDVVELLLKRrakpnlQTRQGVTALMLAAARGSdTAIIGDLLQAGASVNQT 119
                 7899887888888889*****99637************99********956566655599*********9986144555699899999986 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 2.8e-06
       Ank_2  24 k..ngktaLhyAakng.nleivklLleh...ad...ndgrtpLhyAarsg 64 
                 +  +g taL++Aa +g ++ i+  Ll++   ++    d  t+L+ A++ g
  CTQ30488.1  85 QtrQGVTALMLAAARGsDTAIIGDLLQAgasVNqtsIDKSTALMSAISDG 134
                 335899****999988455778666654467444457799*******765 PP

  == domain 4  score: 31.9 bits;  conditional E-value: 5e-11
       Ank_2   7 ngnl.elvklLl.egadpn..k.ngktaLhyAakng.nleivklLleh......adndgrtpLhyAarsghleivklLlekgadin 80 
                 ++n  e+v lLl +gad++  +  g++a ++A+ +  + e++ +L ++      ad++g+tpL++Aa  + +++v  L  +g++++
  CTQ30488.1 194 KKNVdEIVALLLkHGADVKavNaSGESAFFLAVDHArSAETITTLANAgadtslADKSGTTPLMLAAAGDDPDLVLALSASGVEVD 279
                 333448******999**997647***********7626699*****9776677777***********87789******99898876 PP

  == domain 5  score: 30.7 bits;  conditional E-value: 1.2e-10
       Ank_2  11 elvklLl.egadpn..k.ngktaLhyAakngnleivklLleh...ad...ndgrtpLhyAarsghleivklLlekgadinlk 82 
                 +lv  L  +g++++  + +g+taL++Aa +g   ++ +L +    +d    +  +pL++A++ ++   v+ Ll  ga++nl 
  CTQ30488.1 266 DLVLALSaSGVEVDkpNrEGLTALQVAAGQGAPAVIAALAQRgakVDqlsANDLSPLMLAVKMNNKANVEALLAAGASVNLS 347
                 677777678888886438*************98989999985667445557789*******************99****986 PP

  == domain 6  score: 24.4 bits;  conditional E-value: 1.1e-08
       Ank_2   1 LhlAakngnlelvklLl.egadpn..k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgad 78 
                 L++Aa +g++ ++  L   ga+++  + n++++L++A+k +n+  v++Ll++       ++ g+t++ y+ r g  e+ +lLl + a+
  CTQ30488.1 289 LQVAAGQGAPAVIAALAqRGAKVDqlSaNDLSPLMLAVKMNNKANVEALLAAgasvnlSNKAGYTAIGYS-RAG--EVRQLLLAQHAE 373
                 6789999989899999899999996537***********999888*****966675555588****9999.578..999999965565 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   3.2e-12   9.6e-09       1      56 []      42      96 ..      42      96 .. 0.96
   2 !    8.9   0.0   0.00066         2       9      30 ..      82     103 ..      80     106 .. 0.87
   3 !    7.3   0.0     0.002       5.9       1      26 [.     109     134 ..     109     138 .. 0.86
   4 !   10.3   0.0   0.00024      0.71      25      53 ..     194     222 ..     192     225 .. 0.83
   5 !   25.9   0.0     3e-09   8.9e-06       1      56 []     238     292 ..     238     292 .. 0.96
   6 !   17.9   0.2   9.8e-07    0.0029       9      53 ..     316     355 ..     304     357 .. 0.80

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 3.2e-12
       Ank_5  1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56
                +l++g +dv+ +d+ g + L+vAa  ++ dvv+lLl+r+a +nl++ +G tal lA
  CTQ30488.1 42 MLDNG-IDVDGQDKTGLSGLMVAAAENRRDVVELLLKRRAKPNLQTRQGVTALMLA 96
                79***.*******************************************9998665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00066
       Ank_5   9 vnrldgggntpLhvAakygaad 30 
                 +n + + g+t+L++Aa +g+ +
  CTQ30488.1  82 PNLQTRQGVTALMLAAARGSDT 103
                 79999************99866 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.002
       Ank_5   1 LlehgpadvnrldgggntpLhvAak.y 26 
                 Ll++g a+vn +  ++ t+L+ A++ +
  CTQ30488.1 109 LLQAG-ASVNQTSIDKSTALMSAISdG 134
                 89999.99999999999*******944 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00024
       Ank_5  25 kygaadvvrlLlargadlnltdsrGltal 53 
                 k++  ++v lLl++gad ++ +++G++a+
  CTQ30488.1 194 KKNVDEIVALLLKHGADVKAVNASGESAF 222
                 566668888899*************9997 PP

  == domain 5  score: 25.9 bits;  conditional E-value: 3e-09
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 L+++g ad+   d+ g+tpL++Aa +  +d+v+ L a g+  +  + +Gltal++A
  CTQ30488.1 238 LANAG-ADTSLADKSGTTPLMLAAAGDDPDLVLALSASGVEVDKPNREGLTALQVA 292
                 67888.99999*******************************************98 PP

  == domain 6  score: 17.9 bits;  conditional E-value: 9.8e-07
       Ank_5   9 vnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                  n+      +pL++A+k ++   v+ Lla ga+ nl ++ G+ta+
  CTQ30488.1 316 AND-----LSPLMLAVKMNNKANVEALLAAGASVNLSNKAGYTAI 355
                 333.....39*******888889999999**************96 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   8.2e-05      0.25       8      55 .]      30      76 ..      24      76 .. 0.90
   2 !   21.6   0.0     8e-08   0.00024       5      51 ..      60     106 ..      56     110 .. 0.88
   3 ?    5.0   0.0     0.013        39      20      44 ..     109     132 ..     104     138 .. 0.89
   4 !   18.4   0.0     8e-07    0.0024       8      43 ..     192     226 ..     187     238 .. 0.88
   5 !    8.8   0.0   0.00085       2.5      15      53 ..     233     270 ..     229     271 .. 0.83
   6 !   19.3   0.0   4.2e-07    0.0013       2      51 ..     253     301 ..     252     305 .. 0.88
   7 !   10.4   0.0   0.00026      0.77       9      55 .]     293     338 ..     290     338 .. 0.86
   8 !   14.7   0.0   1.2e-05     0.035       3      41 ..     320     357 ..     318     358 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.2e-05
       Ank_4  8 aaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                a+++    +++  l++g+d++ q ++ G++ l  Aa  ++ ++++lLl
  CTQ30488.1 30 ACKYDAPATIAAMLDNGIDVDGQ-DKTGLSGLMVAAAENRRDVVELLL 76
                5666666789999**********.***********************8 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 8e-08
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg.nveil 51 
                 L  aa+++r ++v+lLl ++a +n q  r+G tal  Aa rg +  i+
  CTQ30488.1  60 LMVAAAENRRDVVELLLKRRAKPNLQ-TRQGVTALMLAAARGsDTAII 106
                 567999********************.*************99556665 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.013
       Ank_4  20 LlekgadinaqdnrsGetalhiAak 44 
                 Ll+ ga++n + +++  tal  A++
  CTQ30488.1 109 LLQAGASVNQT-SIDKSTALMSAIS 132
                 899********.***********96 PP

  == domain 4  score: 18.4 bits;  conditional E-value: 8e-07
       Ank_4   8 aaisgrlelvrlLlekgadinaqdnrsGetalhiAa 43 
                 a++++  e+v+lLl +gad+ a+ n+sGe+a+  A+
  CTQ30488.1 192 AFKKNVDEIVALLLKHGADVKAV-NASGESAFFLAV 226
                 566788899**************.**********98 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.00085
       Ank_4  15 elvrlLlekgadinaqdnrsGetalhiAakrgnveilkl 53 
                 e++  L + gad    +++sG t+l  Aa + +++ +  
  CTQ30488.1 233 ETITTLANAGADTSL-ADKSGTTPLMLAAAGDDPDLVLA 270
                 567788899999555.6*************999998865 PP

  == domain 6  score: 19.3 bits;  conditional E-value: 4.2e-07
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveil 51 
                 +t+L  aa+  + +lv  L ++g+++++  nr+G+tal+ Aa  g + ++
  CTQ30488.1 253 TTPLMLAAAGDDPDLVLALSASGVEVDKP-NREGLTALQVAAGQGAPAVI 301
                 799999999999999999999*******8.***********998876665 PP

  == domain 7  score: 10.4 bits;  conditional E-value: 0.00026
       Ank_4   9 aisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 a +g   +++ L ++ga ++   +++++++l  A+k++n+  ++ Ll
  CTQ30488.1 293 AGQGAPAVIAALAQRGAKVDQL-SANDLSPLMLAVKMNNKANVEALL 338
                 55777788999**********9.****************88777775 PP

  == domain 8  score: 14.7 bits;  conditional E-value: 1.2e-05
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhi 41 
                 ++L  a+++++  +v+ Ll+ ga++n + n+ G ta+ +
  CTQ30488.1 320 SPLMLAVKMNNKANVEALLAAGASVNLS-NKAGYTAIGY 357
                 789999*********************9.*******976 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0058        17       7      30 ..      28      50 ..      27      51 .. 0.91
   2 !   11.7   0.0   0.00011      0.33       2      30 ..      56      83 ..      55      84 .. 0.91
   3 !   11.4   0.0   0.00013      0.39       2      30 ..      89     117 ..      88     118 .. 0.92
   4 ?   -1.6   0.0       2.3     7e+03       3      13 ..     124     134 ..     122     136 .. 0.83
   5 ?    4.3   0.0     0.027        81      14      30 ..     196     212 ..     189     213 .. 0.78
   6 ?    1.1   0.0      0.29   8.7e+02       2      27 ..     218     243 ..     217     246 .. 0.74
   7 !    8.0   0.0    0.0017         5       4      30 ..     254     279 ..     251     280 .. 0.88
   8 !   10.2   0.0   0.00032      0.97       1      30 [.     284     312 ..     284     313 .. 0.91
   9 !   10.8   0.1   0.00021      0.63       3      30 ..     319     345 ..     317     346 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0058
       Ank_3  7 hlAarsgnleivkfLlenkgadvn 30
                 lA++++ ++ + ++l+ +g+dv+
  CTQ30488.1 28 LLACKYDAPATIAAMLD-NGIDVD 50
                68*******99******.8***97 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadvn 30
                G + L++Aa  ++ ++v++Ll+ + a +n
  CTQ30488.1 56 GLSGLMVAAAENRRDVVELLLK-RRAKPN 83
                7788******************.999888 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00013
       Ank_3   2 GetpLhlAarsgnle.ivkfLlenkgadvn 30 
                 G t+L+lAa  g+ + i+  Ll+  ga vn
  CTQ30488.1  89 GVTALMLAAARGSDTaIIGDLLQ-AGASVN 117
                 78************989******.8**999 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 2.3
       Ank_3   3 etpLhlAarsg 13 
                  t+L+ A++ g
  CTQ30488.1 124 STALMSAISDG 134
                 69*****9876 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.027
       Ank_3  14 nle.ivkfLlenkgadvn 30 
                 n++ iv +Ll+ +gadv 
  CTQ30488.1 196 NVDeIVALLLK-HGADVK 212
                 44439999999.9***95 PP

  == domain 6  score: 1.1 bits;  conditional E-value: 0.29
       Ank_3   2 GetpLhlAarsgnle.ivkfLlenkga 27 
                 Ge++++lA+ +++ +  +  L +  ga
  CTQ30488.1 218 GESAFFLAVDHARSAeTITTLAN-AGA 243
                 99********9998435666655.555 PP

  == domain 7  score: 8.0 bits;  conditional E-value: 0.0017
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadvn 30 
                 tpL+lAa  +++++v +L    g++v+
  CTQ30488.1 254 TPLMLAAAGDDPDLVLALSA-SGVEVD 279
                 9************9999998.788776 PP

  == domain 8  score: 10.2 bits;  conditional E-value: 0.00032
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvn 30 
                 +G t+L +Aa +g ++++ +L + +ga v+
  CTQ30488.1 284 EGLTALQVAAGQGAPAVIAALAQ-RGAKVD 312
                 599*************9999999.9*9987 PP

  == domain 9  score: 10.8 bits;  conditional E-value: 0.00021
       Ank_3   3 etpLhlAarsgnl.eivkfLlenkgadvn 30 
                  +pL+lA++ +n  + v++Ll   ga vn
  CTQ30488.1 319 LSPLMLAVKMNNKaN-VEALLA-AGASVN 345
                 79***********55.******.8**999 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         2   6.1e+03       8      30 ..      29      52 ..      26      54 .. 0.74
   2 !   11.5   0.0   0.00011      0.33       6      31 ..      60      86 ..      56      87 .. 0.82
   3 !   22.6   0.1   3.4e-08    0.0001       2      30 ..      89     119 ..      88     121 .. 0.86
   4 !   10.3   0.4   0.00026      0.79      14      31 ..     195     215 ..     122     216 .. 0.63
   5 !    8.9   0.0   0.00074       2.2       2      18 ..     252     268 ..     251     282 .. 0.76
   6 ?    3.9   0.0     0.027        82       2      29 ..     285     313 ..     284     316 .. 0.81
   7 !   13.6   0.2   2.4e-05     0.071       4      31 ..     320     348 ..     317     349 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2
                HHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank  8 lAatngkkriiklLL.hGAnlnal 30
                lA+ ++ +  i + L +G +++ +
  CTQ30488.1 29 LACKYDAPATIAAMLdNGIDVDGQ 52
                677777777888889778888755 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00011
                HHHHH...HHTTHHHHHHHH.TTTSTTCBT CS
         Ank  6 LHlAa...tngkkriiklLL.hGAnlnald 31
                L++Aa   +++   +++lLL ++A +n+++
  CTQ30488.1 60 LMVAAaenRRD---VVELLLkRRAKPNLQT 86
                99999566556...******778****997 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 3.4e-08
                 SBBHHHHHHHHTT.HHHHHHHH.TTTSTTCB CS
         Ank   2 GnTPLHlAatngk.kriiklLL.hGAnlnal 30 
                 G T+L+lAa +g+ + ii +LL  GA++n++
  CTQ30488.1  89 GVTALMLAAARGSdTAIIGDLLqAGASVNQT 119
                 99******96666699******66*****97 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00026
                 T..HHHHHHHH.TTTSTTCBT CS
         Ank  14 k..kriiklLL.hGAnlnald 31 
                 k   +i+ lLL hGA++ a++
  CTQ30488.1 195 KnvDEIVALLLkHGADVKAVN 215
                 24679***********98887 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.00074
                 SBBHHHHHHHHTTHHHH CS
         Ank   2 GnTPLHlAatngkkrii 18 
                 G TPL+lAa +++++ +
  CTQ30488.1 252 GTTPLMLAAAGDDPDLV 268
                 89*******77767766 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.027
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlna 29 
                 G T+L +Aa  g + +i +L  +GA +++
  CTQ30488.1 285 GLTALQVAAGQGAPAVIAALAqRGAKVDQ 313
                 99*******666688***99866898876 PP

  == domain 7  score: 13.6 bits;  conditional E-value: 2.4e-05
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 +PL+lA+  ++k  +++LL  GA++n+ +
  CTQ30488.1 320 SPLMLAVKMNNKANVEALLaAGASVNLSN 348
                 8******88888888999*88*****876 PP

>> PSII_Ycf12  Photosystem II complex subunit Ycf12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.4      0.06   1.8e+02       5      19 ..       3      17 ..       1      17 [. 0.90
   2 ?    6.7   0.6    0.0023         7      12      31 ..     287     309 ..     285     310 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.06
                HHHHHHHHHHHHHHH CS
  PSII_Ycf12  5 viaQLtalalIvlAG 19
                vi  L++l l +lAG
  CTQ30488.1  3 VIKGLVLLCLMMLAG 17
                7888**********9 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0023
                 HHHHHHHH...HHHHHHHHHTT- CS
  PSII_Ycf12  12 lalIvlAG...PaVIvlLalRgG 31 
                 +al v+AG   PaVI  La Rg+
  CTQ30488.1 287 TALQVAAGqgaPAVIAALAQRGA 309
                 67778888888**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3539.55
//
Query:       CTQ30489.1  [L=557]
Description: putative metal dependent hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-46  157.9   0.1    4.8e-46  157.6   0.1    1.1  1  Sulfatase  Sulfatase
    3.6e-20   72.4   4.2    3.6e-20   72.4   4.2    1.6  2  EptA_B_N   Phosphoethanolamine transferase EptA/EptB
  ------ inclusion threshold ------
       0.19   11.6   1.2       0.82    9.5   0.0    2.4  2  Maff2      Maff2 family


Domain annotation for each model (and alignments):
>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.6   0.1     8e-50   4.8e-46       3     309 .]     250     539 ..     248     539 .. 0.89

  Alignments for each domain:
  == domain 1  score: 157.6 bits;  conditional E-value: 8e-50
                 EEEEEESSE-TTGSGGGTTTSCSSHHHHHHHHTSEEESSEE-SSSSHHHHHHHHHHSS-HHHHTHSSCCSTTTHHCTTTS-HHHHHHHHTT-EEEEEEE CS
   Sulfatase   3 vvliladdlgagdlglyggktattpnldrlaeeglrftnfysaaplcspsraalltgryphnsgvasntevgggglpqteatLpellkeaGYntaaigk 101
                 vv+i++++++++++g+ g++++ttp+l+   e+ l+  ++ys+ +++  s+ +++ +   ++++         +++  +e+++  +l++ G+  +++  
  CTQ30489.1 250 VVFIIGETTRWDHMGILGYSRNTTPELE--KEKNLVAFRGYSCDTATKLSLRCMFVREGGAEDN---------PQRTLKEQNVFAVLHQLGFSGNLYAM 337
                 9**************************9..878888888889********************99.........*********************88887 PP

                 S-SCCSGGGSHHCCTTTSEEEETSSSCHHTCCCCCCCCCECTCCCTTTTCSHHHHHHHHHHHHHHCCC.TSSEEEEEEE-TTSSSTCTCGGHTCCGSTT CS
   Sulfatase 102 whlgwssrqsvyknrgfdrflgfptgsaalkdpekseyngevlrvppeggysddrlldealefllarn.dkpfflylatlapHappeapdeyakkyatf 199
                  +  w+  ++         + +++++++++   +++ +          + ++d  l+de+ + +++ n + +++++l+t ++H+  +++++y+ ++a++
  CTQ30489.1 338 QSEMWFYSNT---------MANNIAYREQIGAEPRNRG----------KSVDDMLLVDEMKRGMAQGNaSGKHLIILHTKGSHF--NYTQRYPRSFAQW 415
                 7777777776.........6666666666666666655..........56**************55555**************8..************* PP

                 TTCCCCCCH.....HHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHC...... CS
   Sulfatase 200 fddgseaar.....qlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekap...... 287
                 ++++   ++     +l+++y+nsv+yvD++i +vl++L     +++++v++ +Dhg+s++e + +l+g++++ a+++++rvP++vw++++  +      
  CTQ30489.1 416 KPECVGVDNkcskaELINSYDNSVTYVDHFIVSVLDQL----RDKKAIVFYAADHGESINE-REHLHGTPRKMAPPEQFRVPMMVWMSDKYLEnpdhaa 509
                 ****9998889999************************....*****************99.9******************************996666 PP

                 ........EEECSEEE......GGGHHHHHHHHTTE CS
   Sulfatase 288 ........rvseelvs......hiDlfptildlagi 309
                         +             h++l+ ti++++g+
  CTQ30489.1 510 afahlqqqA------AmkvprrHVELYDTIMGCLGY 539
                 666655333......0445566**********9995 PP

>> EptA_B_N  Phosphoethanolamine transferase EptA/EptB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   4.2     6e-24   3.6e-20       3     112 ..      57     170 ..      55     190 .. 0.84
   2 ?   -3.5   0.0       1.4   8.6e+03     134     148 ..     203     217 ..     195     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 6e-24
                 HHHHHHHHHH--..TTTHHHHHHHHHHHHHHHHHHHHHS----SHHHHHHHHH--HHHHHTT--HHHHHHHHHHTHHHHHHHHH-EE---..-HHHHHH CS
    EptA_B_N   3 aalllllsllsl..ryllkpllilllllsaaasYfmdtYgvvidkdMirNvleTdvaEasellslklllyllllgvlPallllrvkikrk..sllkell 97 
                 +++++ll+llsl  r++ ++l++l++l+saaasY+m + +vvi +++i +v++Td++ ++e + ++l+l+l+++ + P+l+++  +++++  ++l++  
  CTQ30489.1  57 FVTFFLLRLLSLfgRRIWRILATLIVLFSAAASYYMTFLNVVIGYGIIASVMTTDIDLSKEVIGWHLILWLVAVSAPPLLFIWSNRCRHTllRQLRTPG 155
                 678888887776448899******************************************************************999544114566677 PP

                 HHHHHHHHHHHHHHH CS
    EptA_B_N  98 krlalllvallvivl 112
                 +r++ +l+ +l  ++
  CTQ30489.1 156 QRVKNVLIVVLAGLI 170
                 888666555544433 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.4
                 GSTTHHHHHHHHHHH CS
    EptA_B_N 134 linPtnyiyslvkyl 148
                  ++P+n++++l  y+
  CTQ30489.1 203 SYLPSNWLSALGLYA 217
                 578999999998776 PP

>> Maff2  Maff2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.21   1.3e+03       9      35 ..      75     102 ..      68     104 .. 0.80
   2 ?    9.5   0.0   0.00014      0.82      11      32 ..     158     179 ..     153     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.21
       Maff2   9 dvlktlvvalGaglgvW.GvvnlleGyG 35 
                  +l tl+v   a+ + +   +n++ GyG
  CTQ30489.1  75 RILATLIVLFSAAASYYmTFLNVVIGYG 102
                 5789999999999887625689999998 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00014
       Maff2  11 lktlvvalGaglgvWGvvnlle 32 
                 +k +++ + agl vWG + lle
  CTQ30489.1 158 VKNVLIVVLAGLIVWGPIRLLE 179
                 567888889************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4249.54
//
Query:       CTQ30490.1  [L=56]
Description: hypothetical protein CH1034_360003 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       186  (0.0103743); expected 358.6 (0.02)
Passed bias filter:                      168  (0.00937029); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 502.16
//
Query:       CTQ30491.1  [L=401]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-31  110.2  47.3    3.9e-18   65.5  18.6    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.049   12.5  33.3      0.021   13.7   4.9    3.4  3  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5  18.6   4.3e-22   3.9e-18       9     225 ..      23     231 ..      12     237 .. 0.82
   2 !   49.5  23.7   3.2e-17   2.9e-13      11     171 ..     229     386 ..     224     400 .. 0.83

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 4.3e-22
       MFS_1   9 alarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.lllvlrvlqGlgagalfpa 105
                 al++  +++++ + l++ lg  +s++ + ++l +lg a++s ++G l +rfG +rv +++ +l++lg ++l+ + ssl  l+l + vl Gl+ ga++ +
  CTQ30491.1  23 ALGSVYTWSLFNSSLSDKLGEPVSQVAFSFGLLSLGLALSSSVAGKLQERFGVKRVTMASGILLGLG-FFLTAHsSSLMmLWLSAGVLVGLADGAGYLL 120
                 3344446667767899***************************************************.6666333555555777888************ PP

       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkall 204
                  ++  ++wfp+ ++g+  ++  ++++lG++    + + l++ +g + +f+i +++ l+++v f++ l+ ++p+++  + +     +++  ++   ++++
  CTQ30491.1 121 TLSNCVKWFPE-RKGLISAFSIGSYGLGSLGFKFIDSHLLATVGLEKTFVIWGAIVLVMIV-FGATLMKDAPNHPAATAANG---VVENDFTL-AESMR 213
                 **********9.*****************999***************************99.56666777777777777777...47777777.88888 PP

       MFS_1 205 kdpvlwillialllfffgfsg 225
                 k++  w+l +++l++  ++sg
  CTQ30491.1 214 KPQ-YWMLAVMFLTA--CMSG 231
                 888.78666666666..5554 PP

  == domain 2  score: 49.5 bits;  conditional E-value: 3.2e-17
       MFS_1  11 arsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgagalfpaga 107
                 +++++ + +   + +   +++++++  ++t+ +++ + + l+lG lsd+++r rv+ +g +++++g+++llfa  +  +++++ +  ++  g+ +++  
  CTQ30491.1 229 MSGLYVIGVAKdIAQGMVHLDVATAANAVTVISIANLSGRLVLGILSDKISRIRVITIGQVVSLVGMAALLFApLNALTFFAAIACVAFNFGGTITVFP 327
                 4444444444436666789999********************************************7777786433346999999999999******** PP

       MFS_1 108 aliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlflll 171
                 +l+++ f  ++ ++ +g++++gf++G+i+g l+++l+    g+ ++f ++ ++++l++ l    
  CTQ30491.1 328 SLVSEFFGLNNLAKNYGVIYLGFGIGSICGSLIASLFG---GFYVTFCVIFALLILSLAL--ST 386
                 **************************************...**********999999553..43 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   4.9   2.3e-06     0.021      36     122 ..      37     120 ..      12     123 .. 0.79
   2 ?   -0.6   0.1     0.051   4.6e+02     280     434 ..     158     183 ..     130     191 .. 0.57
   3 ?    7.2  15.0   0.00022       1.9      50     158 ..     255     365 ..     238     389 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.3e-06
                 -SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGG.HHHHHHHHHHHHHH CS
    Sugar_tr  36 ksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivg.RvlvGigvGlasvl 122
                  s++   e  +++ ++++++++G +++s +ag+l +rfG k + +++++l+  g +l+a +    s+ +l ++  vlvG++ G+ + l
  CTQ30491.1  37 LSDK-LGEPVSQVAFSFGLLSLGLALSSSVAGKLQERFGVKRVTMASGILLGLGFFLTAHSS---SLMMLWLSaGVLVGLADGAGYLL 120
                 3333.233788999************************************************...66666555479999998887765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.051
                 HHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHH CS
    Sugar_tr 280 ifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsEl 378
                 ++ ++gl+                                                                                           
  CTQ30491.1 158 LLATVGLE------------------------------------------------------------------------------------------- 165
                 33344444........................................................................................... PP

                 SHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHH CS
    Sugar_tr 379 fpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvf 434
                                                       ++f++++++++++i+f+ 
  CTQ30491.1 166 --------------------------------------KTFVIWGAIVLVMIVFGA 183
                 ......................................455555555555555543 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.00022
                 HHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS.-SCCHHHHHHH...HH CS
    Sugar_tr  50 livsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiA.pkklRgalvsl...yq 144
                   v + ++  + G l++g+l+d+++R  ++ i+ v++++g +   +a+   +   ++++   v +  G++ ++ P ++sE+    +l++  +++   + 
  CTQ30491.1 255 NAVTVISIANLSGRLVLGILSDKISRIRVITIGQVVSLVGMAALLFAP--LNALTFFAAIACVAFNFGGTITVFPSLVSEFFgLNNLAKNYGVIylgFG 351
                 568889999***************************************..4677888888999*****************8644555555554410145 PP

                 HHHHHHHHHHHHHH CS
    Sugar_tr 145 laitfGilvaaifg 158
                  + + G l+a+ fg
  CTQ30491.1 352 IGSICGSLIASLFG 365
                 55555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       912  (0.0508673); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 2965.31
//
Query:       CTQ30492.1  [L=214]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       216  (0.0120475); expected 358.6 (0.02)
Passed bias filter:                      165  (0.00920297); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1761.76
//
Query:       CTQ30493.1  [L=193]
Description: 3-methyl-adenine DNA glycosylase I, constitutive [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-81  269.9   0.0    9.9e-81  269.7   0.0    1.0  1  Adenine_glyco  Methyladenine glycosylase
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.21   11.7   0.0    1.5  1  RBD            Raf-like Ras-binding domain


Domain annotation for each model (and alignments):
>> Adenine_glyco  Methyladenine glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.7   0.0   1.1e-84   9.9e-81       1     177 []       6     182 ..       6     182 .. 0.99

  Alignments for each domain:
  == domain 1  score: 269.7 bits;  conditional E-value: 1.1e-84
  Adenine_glyco   1 wankdplyvaYhDeeWGvpvtddkklFelLvLegfqaglswetilkkreafreafdgFdlekvakydeekveelladegiirnrlKieavisnAra 96 
                    w+++dply++YhD+eWGv +++ ++lFe+++Leg+qaglsw+t+lkkr+++r+af++Fd+ +va+++++++e+ll+d+giir+r Ki+a+i nAra
     CTQ30493.1   6 WVSQDPLYIEYHDTEWGVAQKEGRQLFEMICLEGQQAGLSWITVLKKRQNYRQAFHQFDPVRVAAMGDDDIERLLQDTGIIRHRGKIQAIIGNARA 101
                    99********************************************************************************************** PP

  Adenine_glyco  97 vlalqeefgsfseylwsfvdgkpiveelksaeevpattelsealskdLkkrGfkfvGptivysflqavGlvndhleeCfrk 177
                    +la++e+ +sf +++wsfvd+ p v++ ++ +e+patt++s+alsk+LkkrGfkfvG+ti+ysf+qa+Glvndh+++Cf++
     CTQ30493.1 102 YLAMEENGESFTDFVWSFVDNAPQVTRAATLAEIPATTPASDALSKALKKRGFKFVGSTICYSFMQACGLVNDHVTGCFCH 182
                    ******************************************************************************985 PP

>> RBD  Raf-like Ras-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.3e-05      0.21      11      37 ..     130     156 ..     127     170 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.3e-05
         RBD  11 rtvvevkpgetvrdaLekalkkRglnp 37 
                  t++e+  + ++ daL+kalkkRg+++
  CTQ30493.1 130 ATLAEIPATTPASDALSKALKKRGFKF 156
                 6899999999**************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1480.23
//
Query:       CTQ30494.1  [L=146]
Description: putative acyltransferase with acyl-CoA N-acyltransferase domain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-14   51.6   0.0    9.9e-14   51.4   0.0    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
      6e-11   42.6   0.0    8.3e-11   42.2   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.2e-09   38.4   0.0    1.6e-09   38.0   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
  ------ inclusion threshold ------
      0.022   14.7   0.0      0.043   13.8   0.0    1.5  1  FR47             FR47-like protein
      0.064   13.2   0.0       0.12   12.4   0.0    1.4  1  Acetyltransf_13  ESCO1/2 acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   2.8e-17   9.9e-14      30     107 ..      47     121 ..      21     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 2.8e-17
  Acetyltransf_10  30 ealllvaeeggkivGvielrdgshisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnasp.yavpfYeklGFk 107
                      +a ++v e++g++ G++++ d++ ++ lfV+p + +qGig+aLl++v++++  +   l+l+v +++  av+fY+ +GF+
       CTQ30494.1  47 AASTWVWEQDGELKGFVSVLDSRFVGALFVAPGATRQGIGRALLDEVKRHY-AW---LSLEVYQKNeSAVSFYHAQGFR 121
                      5678**********************************************9.45...29*******************8 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   2.3e-14   8.3e-11       3      75 ..      48     121 ..      46     122 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 2.3e-14
                     EEEEEEEETTEEEEEEEEEEESTCTEEEEE-GGGTTSSHHHHHHHHTTSEEE.EE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7   3 gevfVaeddgkivGfialslldaeitrlaVdpeyrgkGiGraLleaaekgii.le.qlelnaekaikfYeklGFe 75 
                     ++++V e+dg+  Gf+++  +    + l+V+p + ++GiGraLl+ +++++  l+ +++ ++e a++fY   GF+
      CTQ30494.1  48 ASTWVWEQDGELKGFVSVLDSR-FVGALFVAPGATRQGIGRALLDEVKRHYAwLSlEVYQKNESAVSFYHAQGFR 121
                     689*************988884.5555*****************973433222344455544599*********8 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   4.5e-13   1.6e-09      28     117 .]      43     120 ..      12     120 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 4.5e-13
                     HHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  28 fsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                       l+a +++v+e dgel Gf+s+l   +       +  l+V+p + ++G+G+aLl+++ ++        + l+v + n+ a+ +Y   GF
      CTQ30494.1  43 VYLPAASTWVWEQDGELKGFVSVLDSRF-------VGALFVAPGATRQGIGRALLDEVKRHYAW-----LSLEVYQKNESAVSFYHAQGF 120
                     3457779****************99999.......99*******************99995554.....599*************88*99 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.2e-05     0.043      19      80 ..      66     123 ..      52     128 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
                 -TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47  19 kdggelgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfeki 80 
                 +d+ ++gal v p + r+G g+ l  ++ ++ a     ++l v ++N+ + ++y + Gf+  
  CTQ30494.1  66 LDSRFVGALFVAPGATRQGIGRALLDEVKRHYA----WLSLEVYQKNESAVSFYHAQGFRIE 123
                 667789***************988888877765....689999****************965 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.2e-05      0.12       9      48 ..      73     114 ..      71     133 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.2e-05
  Acetyltransf_13   9 riWvssshRrkgiAtkLldaarenfiy.glel.ekeevAFsq 48 
                      +++v++ + r+gi ++Lld + +++    le+ +k+e A s 
       CTQ30494.1  73 ALFVAPGATRQGIGRALLDEVKRHYAWlSLEVyQKNESAVSF 114
                      68999******************9976433333666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 1216.43
//
Query:       CTQ30495.1  [L=776]
Description: biotin sulfoxide reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.4e-104  349.2   0.0   4.2e-104  348.9   0.0    1.1  1  Molybdopterin    Molybdopterin oxidoreductase
    2.7e-27   95.0   0.1    7.7e-27   93.5   0.0    1.9  2  Molydop_binding  Molydopterin dinucleotide binding domain
    3.3e-09   36.6   0.1    2.6e-08   33.7   0.1    2.4  2  Molybdopterin_N  Molybdopterin oxidoreductase N-terminal doma


Domain annotation for each model (and alignments):
>> Molybdopterin  Molybdopterin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.9   0.0    7e-108  4.2e-104       1     432 []      56     517 ..      56     517 .. 0.97

  Alignments for each domain:
  == domain 1  score: 348.9 bits;  conditional E-value: 7e-108
                    B--S-EEEC..........TTTTTSEEEE--HHHHHHHHHHHHHHHHHHCSGGGEEEEEBTSSCSHHHHHHHHHHHHHTT-EEE-BEECCGGGTTH CS
  Molybdopterin   1 RlkyPmvRk..........qargeGkFvrvsWdeAleliaaslkytikkygpdrvagfssgplmsmeslaslkkllsllggknlsfydwyadlppa 86 
                    R++yPmvRk          + rg+++FvrvsW++Al+li a+++++++ ygp +++ ++s+++ s+  l+ +++ll+++++  +++ ++++d++++
     CTQ30495.1  56 RVRYPMVRKgflaspdkpqGVRGQDEFVRVSWEQALDLIDAQHRRIRDSYGPASIF-AGSYGWRSNGVLHKAATLLQRYMSLAGGYTGHLGDYSTG 150
                    9***************************************************9999.*************************************** PP

                    HHH....CHHCCCCCTTTS-SS-CCGGGG-SEEEEESS-HHHHSHHH.......HHHHHHHHHTTC-EEEEECSSB-H...CGGGCSEEEEEHTTT CS
  Molybdopterin  87 saq....qtigsdsrsnyessnpledlensdliilwGsNvreerpil.......narirkaalkkkakvivigpryae...llkfadewlaikpgt 168
                    +aq    +++g+ +++++++s+pl+ le+s++++lw++N+ ++ +i+        +    +++++++++i+i+p  +e   ++   +ew+a+++gt
     CTQ30495.1 151 AAQaimpYVVGGNEVYQQQTSWPLV-LEHSEVVVLWSANPLNTLKIAwnasdeqGIPWFDRLRQSGKRLICIDPMRSEtvdFFGDSMEWIAPHMGT 245
                    *************************.*********************9888887667777888888***************99************* PP

                    HHHHHHHHHHHHHHCCCCTCHHHHHHEECHHHCCCCCCCEECCS......HHHHHHCCHHHHHHHHHHHHHHTSSEEEEECHHHHTSTTHHHHHHH CS
  Molybdopterin 169 daalalamghvilqelkvdkeflrkytygkeetdmpllvtleee......tgkkkevvariarelarnaaktagksmiivGaglnhrqdgdaiyra 258
                    d+al+l+++h+++++ + d +fl ++t+g++ ++ +l +++++       ++++++v a+++rela+ ++++++  m + G+g++++q g++ +++
     CTQ30495.1 246 DVALMLGIAHTLVENDWQDDAFLTRCTSGYDIFARYLTGESDGVaktaewAAAICGVKADKIRELAQLFHENTT--MLMAGWGMQRQQYGEQKHWM 339
                    **************************************999988888888************************..7777**************** PP

                    HHHHHHHCTHCSSTTCEEEEESSCTTHHHCHHHHTCCTTCCCCCCCTT..................HHHHHCCCTTTCSTSS--ECGGCHHHHHHT CS
  Molybdopterin 259 vinLallvgnvgqpgGgwahlnGqlilagaaekvgalpvllsvkslke..................ekikfaaeqpgnlgnfprnlfversnllks 336
                    +++La+++g++g+pgGg++    ++++a++++++++ +vl s++ ++                   e++++ ++++g    fp+++f+        
     CTQ30495.1 340 LVTLAAMLGQIGTPGGGFGL---SYHFANGGNPTRRAAVLGSMQGSVAggvdavekipvarivealENPGAEYQHNGMARRFPDIRFI-------- 424
                    ******************99...36**********************************99999999999999999999999999998........ PP

                    TSSSEEEEESH.HHHHSTTSCCCHCHHHCSSEEEEEESCSSHHHHTSSEEEEBE-CCGSEEEEE-TTSEEEE...EEESSS-STT-BEHHHHHHHH CS
  Molybdopterin 337 sgkkvlyllgnnpevdhadenevekalekldlvvvldgrltstalyaDiiLPaatwyEkedlytndegrfqh...lkqavsppgeaksdwkIlkaL 429
                          +++g  ++++h+d+n++++a++k++l+v++++++t  a++aDi+LPa+t +E++dl++++++++qh   +kq+v p+ ea++d+ ++ +L
     CTQ30495.1 425 ------WWAGGANFTHHQDTNRLIQAWQKPELIVISECFWTAAARHADIVLPATTSFERNDLTMTGDYSNQHlvpMKQVVAPRDEARDDFAVFADL 514
                    ......68999************************************************************************************* PP

                    HHH CS
  Molybdopterin 430 akk 432
                    +++
     CTQ30495.1 515 SER 517
                    *96 PP

>> Molydop_binding  Molydopterin dinucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.4   8.3e+03      78      96 ..     423     444 ..     421     448 .. 0.77
   2 !   93.5   0.0   1.3e-30   7.7e-27       1     106 [.     636     749 ..     636     754 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
                      SSHCC........S-GHCTS-- CS
  Molydop_binding  78 fgwwe...agekggnaNaltdd 96 
                      f ww+   ++ +++ +N+l+++
       CTQ30495.1 423 FIWWAggaNFTHHQDTNRLIQA 444
                      6688888888999999999965 PP

  == domain 2  score: 93.5 bits;  conditional E-value: 1.3e-30
                      EEEEEE-BTTBSTTTTTCGCCHHHHCSSS.-EEEEEHHHHHHHT--TT-EEEEEETTEEEEEEEEEESSB-TTEEEEESSHCC........... CS
  Molydop_binding   1 lrLitgrsldqlhsqtrtrpvlrlakpep.evveinpedAaalGikdGdlVevesrrGsvevrakvtervrpGvvfmpfgwwe......agekg 87 
                      l+L + ++ ++lhsq +++  ++++++++ e v i+p+dA+a+Gi dGdlV+v+++rG+v + a+vte++rpGv+ ++ g+w        ++k+
       CTQ30495.1 636 LQLLSAHPAHRLHSQLNHTALRERYAVAGrEPVTIHPQDAQARGIVDGDLVRVWNARGQVLAGAVVTEGIRPGVICLHEGAWPdldpqvGICKN 729
                      7899************99999999999999**************************************************************** PP

                      S-GHCTS.--SCSTTT--CS CS
  Molydop_binding  88 gnaNalt.ddatdplsgtpe 106
                      g++N+lt d +t+ l  + +
       CTQ30495.1 730 GAVNVLTkDIPTSRLGNGCA 749
                      *******8888888776665 PP

>> Molybdopterin_N  Molybdopterin oxidoreductase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.1   4.4e-12   2.6e-08       1      41 []      12      52 ..      12      52 .. 0.98
   2 ?   -0.4   0.0       0.2   1.2e+03      14      32 ..     575     593 ..     572     596 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 4.4e-12
  Molybdopterin_N  1 tasHWGafraevkdGkivgvrPfegDpdPspllegvpdavy 41
                     ta+HWG++ +e+++  ++++r + + p  ++l+++v d+v+
       CTQ30495.1 12 TAAHWGPMLVETDGENVLSSRGALATPFANSLQTAVRDQVH 52
                     9***********9999************************9 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.2
  Molybdopterin_N  14 dGkivgvrPfegDpdPspl 32 
                      + ++ +  +f +Dp  +pl
       CTQ30495.1 575 NARFARFAAFRADPQANPL 593
                      557778889999*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       339  (0.0189079); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 5445.23
//
Query:       CTQ30496.1  [L=220]
Description: putative outer membrane lipoprotien [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-23   82.2   0.4    3.8e-23   81.7   0.4    1.2  1  OmpA             OmpA family
    3.6e-13   49.3  15.9    8.3e-13   48.1  15.9    1.7  1  Gly-zipper_Omp   Glycine zipper
    3.6e-09   36.2  20.9    8.2e-09   35.1  20.9    1.6  1  Gly-zipper_YMGG  YMGG-like Gly-zipper
    2.9e-05   23.8  23.1    7.6e-05   22.5  23.1    1.7  1  Rick_17kDa_Anti  Glycine zipper 2TM domain
  ------ inclusion threshold ------
      0.035   13.9   1.3        0.1   12.3   0.4    1.9  2  Pilus_CpaD       Pilus biogenesis CpaD protein (pilus_cpaD)
      0.036   13.8  24.9       0.12   12.2  24.9    2.0  1  Gly-zipper_OmpA  Glycine-zipper domain


Domain annotation for each model (and alignments):
>> OmpA  OmpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.4   1.3e-26   3.8e-23       1      95 []     115     210 ..     115     210 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 1.3e-26
                 .B-TTS--B-GGGHHHHHHHHHHHHS-S--.EEEEE---S---HHHHHHHHHHHHHHHHHHHHHTTSSGGGEEEEE-TT--------------EE. CS
        OmpA   1 yFapgsseLtpkaksaldkiaellkkpeqk.itveGhtdaagseernweLSqkRAeaVanylqnegvppsrisvsgyGaerpitanntaekkarnr 95 
                 +F+++s++L+p+  ++l  +a +lk++e+  + v G+td++gs+  n+ LSq+RA++Va++l+ +gv ++ri+++g+G  +pi++n+tae+ka+nr
  CTQ30496.1 115 TFDSNSANLKPAGANTLTGVAMVLKEYEKTaVNVVGYTDSTGSKDLNMRLSQQRADSVASALITQGVAANRIRTTGMGPANPIASNSTAEGKAQNR 210
                 6************************777668***************************************************************98 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1  15.9   2.8e-16   8.3e-13       1      46 []      37      85 ..      37      85 .. 0.95

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 2.8e-16
  Gly-zipper_Omp  1 iGaaiGAaaGaliGgavg...grgtGaliGAavGaavGgliGaamdkqe 46
                    iGa+iG+++Ga++G+ ++   +rg+GaliGAa+Gaa+Gg+iG++md qe
      CTQ30496.1 37 IGAGIGSLVGAGVGALSSskhDRGKGALIGAAAGAALGGGIGYYMDVQE 85
                    8**************98878789***********************986 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1  20.9   2.7e-12   8.2e-09       3      46 .]      35      80 ..      31      80 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.7e-12
                     ..XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXX-H CS
  Gly-zipper_YMGG  3 avrGAaiGAaaGAvvGaliG..sgggkGAaiGAaaGalaGgaiGaq 46
                      + GA+iG  +GA+vGal+    ++gkGA+iGAaaGa+ Gg iG++
       CTQ30496.1 35 SGIGAGIGSLVGAGVGALSSskHDRGKGALIGAAAGAALGGGIGYY 80
                     56799999999999999999*9999*******************97 PP

>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5  23.1   2.5e-08   7.6e-05       1      42 []      37      78 ..      37      78 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.5e-08
  Rick_17kDa_Anti  1 vGaliGAaaGgvaGaaigggggrvlGavvGAaaGavaGnaig 42
                     +Ga iG ++G+ +Ga+ +++++r  Ga++GAaaGa++G+ ig
       CTQ30496.1 37 IGAGIGSLVGAGVGALSSSKHDRGKGALIGAAAGAALGGGIG 78
                     69***************777*******************997 PP

>> Pilus_CpaD  Pilus biogenesis CpaD protein (pilus_cpaD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.22   6.4e+02       2      22 ..      12      32 ..      11      36 .. 0.76
   2 ?   12.3   0.4   3.3e-05       0.1      43     121 ..     113     196 ..      85     215 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.22
  Pilus_CpaD  2 lalalllagCastaasnrett 22
                ++  l+++gC+++  + ++++
  CTQ30496.1 12 VSGTLAISGCTTNPYTGEREA 32
                567899*****9988876655 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.3e-05
  Pilus_CpaD  43 dlkvasgdggLtaaqrarlealaeeyrregagaivisvpsgssne.....aaaaaaaaeiravlaaaGvpaseisvrayqaaap 121
                 +++++s++ +L++a +++l ++a  +++++++a+ +  +++s  +     + +++ a++++++l+ +Gv a++i+ +++ +a+p
  CTQ30496.1 113 NVTFDSNSANLKPAGANTLTGVAMVLKEYEKTAVNVVGYTDSTGSkdlnmRLSQQRADSVASALITQGVAANRIRTTGMGPANP 196
                 56777899999999999999999999999999998866444433212233889999**********************999987 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2  24.9     4e-05      0.12       3      43 ..      34      77 ..      32      78 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4e-05
  Gly-zipper_OmpA  3 gAavGAalGAaaGAavGai...tGsaGtGAaiGAasGavaGllr 43
                     ++++GA++G++ GA vGa    +++ G+GA iGAa+Ga  G+  
       CTQ30496.1 34 KSGIGAGIGSLVGAGVGALsssKHDRGKGALIGAAAGAALGGGI 77
                     5678888888888888886444689*************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1730.41
//
Query:       CTQ30497.1  [L=338]
Description: 2-ketogluconate utilization repressor PtxS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-24   86.6   0.0    2.9e-24   86.0   0.0    1.2  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    2.1e-24   86.7   0.1    1.9e-22   80.3   0.1    2.2  2  Peripla_BP_3  Periplasmic binding protein-like domain
    1.7e-16   60.6   0.0    2.2e-16   60.2   0.0    1.2  1  Peripla_BP_4  Periplasmic binding protein domain
    5.7e-11   42.0   0.0    3.3e-09   36.4   0.0    2.9  2  LacI          Bacterial regulatory proteins, lacI family
    0.00067   19.7   0.1     0.0017   18.3   0.1    1.7  1  HTH_3         Helix-turn-helix
     0.0021   18.1   0.1      0.005   16.8   0.1    1.7  1  HTH_19        Helix-turn-helix domain
  ------ inclusion threshold ------
      0.018   15.4   1.8       0.06   13.7   0.0    2.8  3  HTH_31        Helix-turn-helix domain
      0.058   12.9   0.0       0.25   10.8   0.0    1.9  2  CbiJ          Precorrin-6x reductase CbiJ/CobK
      0.061   13.1   0.3       0.35   10.7   0.1    2.3  2  TetR_N        Bacterial regulatory proteins, tetR family


Domain annotation for each model (and alignments):
>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.0   1.4e-27   2.9e-24       3     261 ..      67     316 ..      65     327 .. 0.88

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 1.4e-27
                   EEEEEES-TTSHHHHHHHHHHHHHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GGHHHHHHHHHHT-EEEEESS--B-TTTS-EE CS
  Peripla_BP_1   3 klglvlpqldePffldlvkgitkaakehgvdvlllaageeedla.kaidllkakgidgliiatsdtsfdditakaesgipvialedaidapdgvPcv 98 
                    +gl++++ ++P+++++++gi+ a +e g+ +l+ ++++e d++ +++dll++ +++g+++   + + d + + ++s++p++++++ i +  + ++v
    CTQ30497.1  67 LIGLIIADITNPYSVNVMSGIEAACREKGFTLLVCNTNNELDQElHYLDLLRSYQVEGIVVNAVGMREDGLNRLQQSALPMVLIDRKIPDF-ACDVV 162
                   59*************************************************************************************7776.99*** PP

                   EE-HHHHHHHHHHHHHHHHHHHTGEEEEEE-TTS.HHHHHHHHHHHHHHHT.T-GGGEEEEE-SSSSHHHHHHHHHHHHTT-TT-S.EEE-SSHHHH CS
  Peripla_BP_1  99 ipddtqageestqkLiaeghkrpiallegpesal.takervqGflaalaea.GlevkdvhvalgsndiedaaealnelleshPeid.aivaindeaa 192
                     d+ qa++ +t++L+++g +  i+ l++p  +  t++er   f+a+la + G   ++ +v    nd     + l ++  +h  +  a++  n    
    CTQ30497.1 163 GLDNAQAATTATEHLVEKGFEA-ILFLSEPLGSVnTRRERLSAFRATLARHhGVVAENAEVQ--LNDGAMLDNVLRQFHARHRGMRkAVISANGALT 256
                   **********************.*******98877*************86527745555555..577777889999999999555559999999999 PP

                   HHHHHHHHHTT.--GGGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH....HHHHHHHHHHHH-S CS
  Peripla_BP_1 193 lGavlalkkeGrlkikeevdsfiesvvvydgLkkaqdtilelsplaviqlprellGrkasdmvlqkink 261
                   l  ++alk  G l   +++     +++++d+L   +   l +  +++   p  ++G++a ++v+  i  
    CTQ30497.1 257 LQVARALKRVG-LIWGSDI-----GLLGFDEL---EWAELAGVGITTLKQPTWQIGYAAVEQVIRRIAG 316
                   999********.7777777.....7*******...6666777778888888899999999999999833 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0      0.02        40       7      65 ..      62     116 ..      56     172 .. 0.72
   2 !   80.3   0.1   9.7e-26   1.9e-22       1     166 []     174     336 ..     174     336 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.02
                   CS.--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.... CS
  Peripla_BP_3   7 lG.hrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraall 65 
                   +G  r i++i    d ++++s +++ g + a++e+g++l ++ ++++   +++++++ +l
    CTQ30497.1  62 HGrTRLIGLII--ADITNPYSVNVMSGIEAACREKGFTLLVCNTNNE---LDQELHYLDL 116
                   33134455555..77789********************987766554...4455555544 PP

  == domain 2  score: 80.3 bits;  conditional E-value: 9.7e-26
                   ..HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHH.TTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SEEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   1 vehLvelGhrriafiggegdrgasasderergfrqal.eelglplnetvvaaddpaaaaaaraalllqalklaalPtAviaasDelAlgvlqalrea 96 
                   +ehLve+G+  i f++ e+     + +er+ +fr +l +++g+  +  +v+ +d a  + + ++    +  +  + +Avi a+ +l l+v +al++ 
    CTQ30497.1 174 TEHLVEKGFEAILFLS-EPLGSVNTRRERLSAFRATLaRHHGVVAENAEVQLNDGAMLDNVLRQF-HARHRG--MRKAVISANGALTLQVARALKRV 266
                   69**************.8888889*******************9777777766666666666554.122222..337******************** PP

                   T--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--EEE--GGG CS
  Peripla_BP_3  97 glrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllegekappeqvllppelveReSt 166
                   gl    d+ ++gfd  e a+l+   +Tt +qp+ ++G+aa+e+++++++g++ p ++++ + el++R+St
    CTQ30497.1 267 GLIWGSDIGLLGFDELEWAELAGVGITTLKQPTWQIGYAAVEQVIRRIAGTNDPIRERVFSGELIVRGST 336
                   **************99999****************************************999*******8 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   1.1e-19   2.2e-16       1     256 [.      68     316 ..      68     318 .. 0.84

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 1.1e-19
                   EEEEES-SSTCHHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CE CS
  Peripla_BP_4   1 igvvvkdksnpffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerl 97 
                   ig+++ d +np+  ++  g+e+a++e+g++  v  +++n+  ++   ++ + + +v gi+v++v     ++ l+++++   p+v +d+     +  +
    CTQ30497.1  68 IGLIIADITNPYSVNVMSGIEAACREKGFTLLVC-NTNNELDQELHYLDLLRSYQVEGIVVNAVGM--REDGLNRLQQSALPMVLIDRK--IPDFAC 159
                   7999****************************97.88888899999999999999********995..679******************..889999 PP

                   EEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHH.HHHHHHHHHHHH-TTCEECCEEESTTTCHHHHHHHHHHHHH.TTT..ECEEEES CS
  Peripla_BP_4  98 ayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnae.eriegfrkvlkeypgikivaevaganwdaekaqqaleallt.anp..ldgilaa 190
                    +vg dn +a++++ e l+ek  +    ++ l+  +g+ n++ er+ +fr++l+      +vae+a+++ +     +++   +  ++    +++++a
    CTQ30497.1 160 DVVGLDNAQAATTATEHLVEKGFEA---ILFLSEPLGSVNTRrERLSAFRATLAR--HHGVVAENAEVQLNDGAMLDNVLRQFHaRHRgmRKAVISA 251
                   9**********************77...9999*****777777************..6777778888886666666666666664664589****** PP

                   SCCHHHCHHHHHHHTTT..TSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT CS
  Peripla_BP_4 191 ndgmaegalealeaagl..agkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkG 256
                   n++ ++++++al+  gl    ++ + g+D  + a   ++   i+ t  q+++++gyaave + + ++G
    CTQ30497.1 252 NGALTLQVARALKRVGLiwGSDIGLLGFDELEWAE--LAGVGIT-TLKQPTWQIGYAAVEQVIRRIAG 316
                   **************999844444477777544433..2223333.999999999****9998876666 PP

>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   1.7e-12   3.3e-09       1      46 []       8      54 ..       8      54 .. 0.97
   2 ?    2.3   0.0     0.072   1.4e+02       6      15 ..     285     294 ..     283     295 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.7e-12
                -HHHHHHHCTS-HHHHHHHCTTS.SSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnk.erVseetrerVeaameelnYiPn 46
                ti DVA++A+  k+ +Sr+Ln++    s+++  r+e+a++el+Y+P+
  CTQ30497.1  8 TISDVAKAAKTGKTSISRYLNGEkHLLSDDLLSRIEKAIAELDYRPS 54
                8**********************7889******************96 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.072
                 HHHCTS-HHH CS
        LacI   6 ArlAGVSkaT 15 
                 A+lAGV  +T
  CTQ30497.1 285 AELAGVGITT 294
                 9******999 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   8.7e-07    0.0017      11      48 ..       8      46 ..       3      50 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.7e-07
                HHHHHHHHHTSSHHHHHHHHTT.SSCSBHHHHHHHHHHH CS
       HTH_3 11 sqeeLAeklGvsrstisriEnG.ernPsletlkklakaL 48
                ++ ++A+++   +++isr+ nG +   s + l +++ka 
  CTQ30497.1  8 TISDVAKAAKTGKTSISRYLNGeKHLLSDDLLSRIEKAI 46
                6789********************************985 PP

>> HTH_19  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.5e-06     0.005      14      50 ..       8      48 ..       3      50 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.5e-06
      HTH_19 14 tqeelaerlgisrskisaiEngkkdvpsaell....lkiae 50
                t+ ++a+ +++ +++is + ng+k+ +s +ll    ++iae
  CTQ30497.1  8 TISDVAKAAKTGKTSISRYLNGEKHLLSDDLLsrieKAIAE 48
                899*******************9999999999777666666 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     3e-05      0.06      12      51 ..       4      43 ..       2      52 .. 0.89
   2 ?   -2.8   0.3       4.2   8.4e+03       9      26 ..     198     215 ..     196     220 .. 0.67
   3 ?   -2.7   0.0         4     8e+03      20      31 ..     284     295 ..     276     297 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-05
      HTH_31 12 raGLsqeevAerlgvsestlsrlEqGrrgrpspavleala 51
                +a+ +  +vA+++   ++ +sr+ +G+  + s + l ++ 
  CTQ30497.1  4 AARATISDVAKAAKTGKTSISRYLNGEKHLLSDDLLSRIE 43
                788999**********************999988887765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.2
      HTH_31   9 lReraGLsqeevAerlgv 26 
                 +Rer    ++ +A++ gv
  CTQ30497.1 198 RRERLSAFRATLARHHGV 215
                 677776666777766554 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 4
      HTH_31  20 vAerlgvsestl 31 
                  Ae++gv  +tl
  CTQ30497.1 284 WAELAGVGITTL 295
                 477888877776 PP

>> CbiJ  Precorrin-6x reductase CbiJ/CobK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00012      0.25      66     109 ..      71     115 ..      40     142 .. 0.78
   2 ?   -0.3   0.0      0.31   6.3e+02     180     221 ..     116     160 ..     113     179 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00012
                 EEEE-S-TT-HHHHHHHHHHHHHHT-EEEEE-------.EEEEES CS
        CbiJ  66 lvvDATHPfAaeisanaaeackelgipylrleRpswea.kiievd 109
                 ++ D T P+ +++ + + +ac+e g  +l+++ +++   +++++d
  CTQ30497.1  71 IIADITNPYSVNVMSGIEAACREKGFTLLVCNTNNELDqELHYLD 115
                 367*************************99987765555555554 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.31
                 HHHHTT--EEEEES--SS.TTTHHHHHHHHTT-EEEEE---......- CS
        CbiJ 180 llreykidvlVtKeSGgaGgteeKleaArelgipvivikRp......e 221
                 llr y+++ +V  + G     e  l+  ++  +p+++i+R+      +
  CTQ30497.1 116 LLRSYQVEGIVVNAVGMR---EDGLNRLQQSALPMVLIDRKipdfacD 160
                 778888888888877777...778888899999999999986655441 PP

>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00018      0.35      16      36 ..       6      26 ..       4      34 .. 0.92
   2 ?   -1.4   0.0       1.1   2.1e+03       4      16 ..     172     184 ..     171     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00018
                T--HHHHHHHHTSSHHHHHHH CS
      TetR_N 16 attvreIAkrAGvskgalYry 36
                ++t++++Ak+A+++k ++ ry
  CTQ30497.1  6 RATISDVAKAAKTGKTSISRY 26
                789***************999 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
                 HHHHHHHHHHTTT CS
      TetR_N   4 aArelfaerGyda 16 
                 +A e + e+G++a
  CTQ30497.1 172 TATEHLVEKGFEA 184
                 6888999****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.35
# Mc/sec: 2905.72
//
Query:       CTQ30498.1  [L=249]
Description: putative sugar phosphate isomerase/epimerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-06   28.1   0.1    3.1e-05   23.5   0.0    2.2  2  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.0    0.0043        77       3      58 ..      29      81 ..      27     108 .. 0.75
   2 !   23.5   0.0   1.7e-09   3.1e-05     112     201 ..     113     200 ..     111     220 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0043
                  HHHHCT-SEEEEECCTCSHHHHCHHHHHHHHHHHHHHTTSEEEEEEECCCHSTCTH CS
  AP_endonuc_2  3 aaaeaGfdgvElfgrdlvpvselsdeelrelrkaldelglriaslslftrfgypde 58
                  ++a+aG+dgvE++             +l  l++ ++++gl  +   +++ f++ +e
    CTQ30498.1 29 FIANAGADGVEIRRELCSAEEL---NALPSLAATIERHGLLACYSAPQALFTDNGE 81
                  6899********9887777764...5888888888888888777777766666555 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 1.7e-09
                   HHHHHHHHHHHHTSEEEEE--TTTTSSSTC.HHHHHHHHHHTTTTEEEEEEHHHHHHHTTTHHHHHHHHHGGEEEEEE.EESSTTTTSSTT CS
  AP_endonuc_2 112 slneladyaekegvklalEtlagsgvelgd.eelarlldavdspnvgvclDtgHlliaeedvddalraladrikhvHikDakgdlgagrdr 201
                    l+el d++ + g+ l++E+   +  +l   + +++ ++    p + +++D g++l+ ++ +++a r+la+ ++++H+k a+      + r
    CTQ30498.1 113 QLDELRDILSDSGMALVVENDQTDCGQLAPmQRFKAACRVHQLP-ITLTFDMGNWLWVGDSPEEAARHLAPAVSYIHVKAAEP--HHEKFR 200
                   68999***************999998777799999999999988.*********************************88777..444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2027.65
//
Query:       CTQ30499.1  [L=311]
Description: 2-dehydro-3-deoxygluconokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-62  210.5   1.2    3.7e-62  210.3   1.2    1.0  1  PfkB          pfkB family carbohydrate kinase
    0.00017   21.0   0.0    0.00029   20.3   0.0    1.3  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.3   1.2   4.1e-66   3.7e-62       3     301 ..       5     305 ..       3     306 .. 0.93

  Alignments for each domain:
  == domain 1  score: 210.3 bits;  conditional E-value: 4.1e-66
                 EEEEEEEEEEEEEEECSSHTTSEEEESEEEEEEESHHHHHHHHHHHTT-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETTT. CS
        PfkB   3 kvvviGealidliavseklegelvevktveksaGGagaNvAvalarlgadvafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvded. 100
                 +v  iGea+  ++a++ +   +l ev+++ k+ +Ga +NvA++larlg +v ++++vG+D fG+f+l++l+keg+d++ v id++  tg  +    e+ 
  CTQ30499.1   5 DVITIGEAMAMFVATETG---DLAEVEHFMKRVAGAELNVATGLARLGLKVGWVSRVGNDSFGRFVLQSLAKEGIDSHAVAIDNRFATGFQMKSKVENg 100
                 6889************99...************************************************************************999997 PP

                 SEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEES..EECTTSHHHHHHHHHHHHHHTTE...EEEEECESSSHH...HHHHHHHHHCTESEEEEEH CS
        PfkB 101 gertivfnrgaaadltkeeleededlleeadllyisg..llsselpeavleelaeaaknggt...fdpnlldplgaq...fkeallellaladllkpne 191
                  +  + ++r+ +a+   ++ +  +d++ +a +l++sg  +  se++ a+le++a+++k++g+   fdpnl++ l+++   ++e+l +l  +ad++ p  
  CTQ30499.1 101 TDPIVEYFRKGSAASHLSPDDFRADYFTSARHLHLSGvaAALSESSYALLEHAAKVMKAEGKtlsFDPNLRPVLWKSeaeMVEKLNRLAFQADWVLPGL 199
                 7888888888888777777778***************6666666666666666666666666************************************* PP

                 HHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEE.TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH CS
        PfkB 192 eElealtgekledieealaalhklkakgaktvvvtlGkeGalvve.kdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalv 289
                 +E  +ltg++  ++e +++ +     +g+k vv++ G +Ga++++ ++++  v+a++  +vvDt+GAGD f+ g+++allegk+l +a+ ++n++++l+
  CTQ30499.1 200 KEGVILTGQQ--TPEGIADFYLS---RGVKAVVIKTGCDGAWFKSaSGEQGTVDAIKVDNVVDTVGAGDGFAVGVISALLEGKTLLQAVNRGNKIGSLA 293
                 **********..********988...9*******************999************************************************** PP

                 HTSSSSSTCSCC CS
        PfkB 290 vqkkgaiaslpt 301
                 +q +g ++ lpt
  CTQ30499.1 294 IQVQGDSEGLPT 305
                 *******99998 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   3.2e-08   0.00029     106     232 ..     179     294 ..     173     302 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.2e-08
                   HHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHTT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S--BTHHHH CS
  Phos_pyr_kin 106 eeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllklgakaVlikGghlegeeavvtdvlydgeeveeleaerietknthGtGCt 202
                   +e ve+l++ L+ +a+ + P l+E   L+g     +++ +  a+  l+ g+kaV+ik g    + a+++    ++++v  ++ + +   +t G+G+ 
    CTQ30499.1 179 AEMVEKLNR-LAFQADWVLPGLKEGVILTG-----QQTPEGIADFYLSRGVKAVVIKTGC---DGAWFKSASGEQGTVDAIKVDNVV--DTVGAGDG 264
                   677888886.9999****************.....6778888999999***********7...678888888899999999988887..9******* PP

                   HHHHHHHHHHCTSSHHHHHHHHHHHHHHHH CS
  Phos_pyr_kin 203 lssaiaaelakgesleeAvkkAkeyvteai 232
                   ++  + + l +g++l +Av+++++  + ai
    CTQ30499.1 265 FAVGVISALLEGKTLLQAVNRGNKIGSLAI 294
                   ********************9987666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2494.65
//
Query:       CTQ30500.1  [L=426]
Description: General substrate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-55  186.8  51.2    8.2e-42  143.4  17.9    2.0  2  MFS_1     Major Facilitator Superfamily
    2.4e-05   23.4  32.3    7.9e-05   21.7  32.2    2.0  1  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
      0.012   14.3  18.8      0.011   14.4  16.2    1.9  2  ATG22     Vacuole effluxer Atg22 like
      0.039   13.3  29.8       0.42    9.8  29.8    2.0  1  MFS_4     Uncharacterised MFS-type transporter YbfB
        7.6    6.7   8.5          6    7.0   4.8    2.7  3  YrvL      Regulatory protein YrvL


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4  17.9   2.3e-45   8.2e-42       1     233 [.      18     257 ..      18     268 .. 0.93
   2 !   49.3  25.7   8.9e-17   3.2e-13      33     178 ..     269     414 ..     262     424 .. 0.86

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 2.3e-45
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 +++++ l++l+r+++++a    ++edlgi++   +ll +l++lg++++++p++  ++r + r++++++l+l++ ++ l  +++++++l++ r++ G+ +
  CTQ30500.1  18 VFITYSLAYLDRANFSFASAAGITEDLGITKGISSLLGALFFLGYFFFQIPGAIYAERRSVRKLIFICLILWGGCASLTGIVHNIPALAAIRFILGVVE 116
                 699************************************************************************4444456***************** PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........kg 190
                 +a++pa++++i+ wf+k+er+ra+ +l +g+ + ++   +++g+l++++gWr +f+i ++ +++++ ++++l+ ++p++ ++ ++ e+         ++
  CTQ30500.1 117 AAVMPAMLIYISNWFTKSERSRANTFLILGNPVTVLWMSVVSGYLIQAFGWREMFIIEGVPAVIWAFCWWVLVKDKPSQVSWLAESEKAalqeqldrEQ 215
                 ********************************************************************99999******99999999999999999999 PP

       MFS_1 191 tgpaplvpawkallkdpvlwillialllfffgfsglltllply 233
                 +g +++++  +a+++++v++ l +  + +++g++g++ +lp++
  CTQ30500.1 216 QGIKAVRNYGEAFRSRNVIL-LCAQYFAWSIGVYGFVLWLPSI 257
                 99999999666666666665.88889999999999******96 PP

  == domain 2  score: 49.3 bits;  conditional E-value: 8.9e-17
       MFS_1  33 eigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa...sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa 128
                 e+g+l ++ +l+a +a++++++ sd++  r+++++ lll +  ++++++a   +++w+ + l v++G+++ a +    a+i ++ p++  g a++l+++
  CTQ30500.1 269 EVGWLSSVPYLAATIAMIVVSWASDKLQNRKLFVWPLLLIGGLAFIGSWAvgaNHFWVSYTLLVVAGAAMYAPYGPFFAIIPEMLPRNVAGGAMALINS 367
                 79*****************************77777777777758888866857777****************************************** PP

       MFS_1 129 gfslGailgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                 + +lG+ +g  + g+l  + g +a+ yi+ +v+l+a v   +l +  +p+
  CTQ30500.1 368 MGALGSFCGSWFVGYLNGATGSPAASYIFMGVALFASV---WLTLIVKPA 414
                 *****************999999998888888888877...443333333 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7  32.2   2.2e-08   7.9e-05      45     437 ..      48     411 ..      13     419 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.2e-08
                 ..HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHH CS
    Sugar_tr  45 svlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsly 143
                 +  s+l+ ++f++G ++ ++ + + ++r + +k + i+ +l   +a l+++ +   ++ +l++ R+++G+   ++   + +yis   +k+ R++     
  CTQ30500.1  48 KGISSLLGALFFLGYFFFQIPGAIYAERRSVRKLIFICLILWGGCASLTGIVH---NIPALAAIRFILGVVEAAVMPAMLIYISNWFTKSERSRA---- 139
                 4567888899999999999999*******************************...9***********************************886.... PP

                 HHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS.---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.... CS
    Sugar_tr 144 qlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllfl.PESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeeeka 240
                 ++++++G  v+   + ++  +  +a gwr ++ ++ vpa++ ++++++l  + P    +    e  k+ l++     + dre + +k+  +++      
  CTQ30500.1 140 NTFLILGNPVTVLWMSVVsGYLIQAFGWREMFIIEGVPAVIWAFCWWVLvKDKPSQVSWLA--ESEKAALQE-----QLDREQQGIKAVRNYG------ 225
                 667899999998877777566666899************8887776554133332222222..111444444.....5555555555555555...... PP

                 .HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHH....HHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 241 swkellssktvrqrlligvvlqifqqltGinaimyysptif....enlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg 335
                    e ++s++     +i +  q f    G+  +    p+i+    en+g+ +  + + + +   ++a +v+ + +d++  R+l+++ ++    +++i +
  CTQ30500.1 226 ---EAFRSRN-----VILLCAQYFAWSIGVYGFVLWLPSIIrsggENMGMVEVGWLSSVPYLAATIAMIVVSWASDKLQNRKLFVWPLLLIGGLAFIGS 316
                 ...6677756.....677777888888999999999999983444578888886666666666666666667**************9998777776665 PP

                 ..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHH CS
    Sugar_tr 336 ivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvf 434
                    +++ +   + s+ ++v     +a++a   gp +  +++E+ p +v + a+a+   +  l +f  s++  ++ +a g +   ++f+g+a+++ ++  
  CTQ30500.1 317 --WAVGANHF-WVSYTLLVV--AGAAMYA-PYGPFF-AIIPEMLPRNVAGGAMALINSMGALGSFCGSWFVGYLNGATGSPAASYIFMGVALFASVWLT 408
                 ..66666664.555544332..2334444.566777.5669***************************************************9998877 PP

                 HHS CS
    Sugar_tr 435 ffv 437
                 + v
  CTQ30500.1 409 LIV 411
                 666 PP

>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.071   2.6e+02     230     292 ..      56     131 ..      39     143 .. 0.74
   2 ?   14.4  16.2     3e-06     0.011     228     469 ..     168     412 ..     141     418 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.071
       ATG22 230 alllvGlwWliftipaalllkkrpgpplp...............kglsyliygwkslgrtlkqarklkdvllfLvawf 292
                 al++ G   ++f+ip a++  +r+ ++l                 + ++ +++  +++  + +a  ++ +l+++  wf
  CTQ30500.1  56 ALFFLG--YFFFQIPGAIYAERRSVRKLIficlilwggcasltgIVHNIPALAAIRFILGVVEAAVMPAMLIYISNWF 131
                 555555..4788999999998888888887777777777766655556777777777777777777777777777777 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 3e-06
       ATG22 228 rlalllvGlwWliftipaalllkkrpgpplp.............kglsyliygwkslgrtlkqarklkdvllfLvawfllsdgiatvss.tavlfakte 312
                 r ++++ G+  +i+++ + +l+k+ p + +                +++ i+++++ g+++    + ++v+l ++ +f +s+g+  ++  + +++ +  
  CTQ30500.1 168 REMFIIEGVPAVIWAFCWWVLVKDKPSQVSWlaesekaalqeqlDREQQGIKAVRNYGEAF----RSRNVILLCAQYFAWSIGVYGFVLwLPSIIRSGG 262
                 5555556666666666666666666644444455555555554444455556666666555....5699***************996651667777778 PP

       ATG22 313 lkmstaklillsivaviaavlGaflwplvsrrlnlktkktllaiivlfeliplyGllGiilgkiGlkqpwEfyvlavvyglvlgglssysRslfseLiP 411
                  +m++++++ ls v ++aa++  +++++ s +l+++  k++++ ++l+  +    ++G +   +G ++ w  y l vv g ++ + +    +++ e++P
  CTQ30500.1 263 ENMGMVEVGWLSSVPYLAATIAMIVVSWASDKLQNR--KLFVWPLLLIGGLA---FIGSW--AVGANHFWVSYTLLVVAGAAMYAPYGPFFAIIPEMLP 354
                 9*******************************9999..66666665544333...33333..68*********************************** PP

       ATG22 412 rGkEaaFFsLyaitdkgssvigplivglItDrtgnirsafvflavLlvvplpllllvd 469
                 r       +L + ++  +s+ g+  vg +  +tg+  ++++f+ v l++++ l l+v+
  CTQ30500.1 355 RNVAGGAMALINSMGALGSFCGSWFVGYLNGATGSPAASYIFMGVALFASVWLTLIVK 412
                 ****************************************************999986 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  29.8   0.00012      0.42      20     361 ..      41     407 ..      31     409 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00012
       MFS_4  20 laegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrerv 118
                  ++++++ +  +ll+a  +lGY+   +  a+ ++++  R  + + l++    +   ++++++ a+++iRf++Gv+ A+v+ ++   + +  ++++r+r 
  CTQ30500.1  41 TEDLGITKGISSLLGALFFLGYFFFQIPGAIYAERRSVRKLIFICLILWGGCASLTGIVHNIPALAAIRFILGVVEAAVMPAMLIYISNWFTKSERSRA 139
                 57788888999***********9855544444499999999999999999999999***********************99999999999999999999 PP

       MFS_4 119 gallfaGvGlGiavsgllv.llllqlglsassl............Wlal..avlsavllllvalllp....raalreasaaaeaakaeqkslpllalll 198
                   +l  G  + ++  +++  +l++++g+ + ++            W++l     s v  l+    +      ++++++ +a +   ++ +s+ ++ l +
  CTQ30500.1 140 NTFLILGNPVTVLWMSVVSgYLIQAFGWREMFIiegvpaviwafcWWVLvkDKPSQVSWLAESEKAAlqeqLDREQQGIKAVRNYGEAFRSRNVILLCA 238
                 999999999999876655414444455555544555555555666444312123333333332222222233455666666666667788999****** PP

       MFS_4 199 aYglaGfGYiitatFlvaiardgaggalleallW..llvGlaaivgvlvwlrvakrsglrralaaa.llieavgvllsllspsplglivs...svllGl 291
                 +Y+   +G      +l+ i+r+g++   + +  W  ++  laa +++ v  +++++ ++r++++   lli +++ + s +  +     vs    v+ G+
  CTQ30500.1 239 QYFAWSIGVYGFVLWLPSIIRSGGENMGMVEVGWlsSVPYLAATIAMIVVSWASDKLQNRKLFVWPlLLIGGLAFIGSWAVGANHF-WVSytlLVVAGA 336
                 ***********************9999999999944467899*99**999999999999999887516788899988888766533.333111356799 PP

       MFS_4 292 tflaitalvlqlarelappat.rrllglmTasfgigQilGpllasllaeatgslalallvaaaalvlaali 361
                 ++ a      +++ e+ p ++   +++l+  + ++g   G   ++ l  atgs a++ +  ++al+ ++ +
  CTQ30500.1 337 AMYAPYGPFFAIIPEMLPRNVaGGAMALINSMGALGSFCGSWFVGYLNGATGSPAASYIFMGVALFASVWL 407
                 9999999999*********997889***************************************9988766 PP

>> YrvL  Regulatory protein YrvL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.8    0.0017         6      16      62 ..      53      99 ..      46     132 .. 0.81
   2 ?   -1.1   0.1      0.53   1.9e+03      47      95 ..     108     156 ..     104     164 .. 0.56
   3 ?   -1.8   0.0      0.86   3.1e+03      42      60 ..     394     412 ..     388     414 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0017
        YrvL 16 vfaifflvvvglfkllGieYeSvgslllFfliflvlglllellakil 62
                 ++++f++++ +f++ G+ Y+ ++s+   + i+l+l   +  l+ i+
  CTQ30500.1 53 LLGALFFLGYFFFQIPGAIYAERRSVRKLIFICLILWGGCASLTGIV 99
                67899*********************999999999865555555555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.53
        YrvL  47 iflvlglllellakillkvllelkklskslakllalildltftllaihi 95 
                 i ++lg++  +++ ++l  +++    s+++ +  +lil   +t+l + +
  CTQ30500.1 108 IRFILGVVEAAVMPAMLIYISNWFTKSERSRANTFLILGNPVTVLWMSV 156
                 5567775555555555555555444444555555566666555555544 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.86
        YrvL  42 llFfliflvlglllellak 60 
                  +F++++l+ ++ l+l++k
  CTQ30500.1 394 YIFMGVALFASVWLTLIVK 412
                 5789999999888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.38
# Mc/sec: 3403.81
//
Query:       CTQ30501.1  [L=323]
Description: 2-oxo-carboxylic acid reductase (glyoxalate reductase) (2-ketoaldonate reductase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-63  212.7   0.0    4.6e-63  211.8   0.0    1.4  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    1.5e-29  102.3   0.1    1.8e-29  102.1   0.1    1.0  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    0.00011   22.4   0.1    0.00084   19.5   0.0    2.2  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.8   0.0   7.7e-67   4.6e-63       1     178 []     108     287 ..     108     287 .. 0.97

  Alignments for each domain:
  == domain 1  score: 211.8 bits;  conditional E-value: 7.7e-67
                   HHHHHHHHTTHHHHHHHHHTTCC..HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHH.HTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SE CS
  2-Hacid_dh_C   1 lalllallrrlaeadeevregew..ksekallgkelsgktvGiiGlGrIGqavakrlk.afgmkviaydrskkkeeeeeelgvelvsleellaesDi 94 
                   +al+l+++rr+ e+ e+v++gew  +   +  g+++++kt+Gi+G+GrIG a+a+r++ +fgm +++  r++++++ ee+ ++++++l++ll+e+D+
    CTQ30501.1 108 MALVLSTARRVVEVAERVKAGEWtkSIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHfGFGMPILYNARRQHPQA-EERFNARYCDLDTLLQEADF 203
                   689********************76666799****************************************99888.888899************** PP

                   EEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  95 vslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   v+l lpl++et+hl++++++akmk++ai+iN++RG++vde+aL++aL++g+i++a+lDvfe+epl +dspll+lpnv+  PHi+
    CTQ30501.1 204 VCLILPLSEETHHLFGQAQFAKMKSSAIFINAGRGPVVDEQALIAALQNGEIHAAGLDVFEHEPLAKDSPLLSLPNVVALPHIG 287
                   **********************************************************************************98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.1     3e-33   1.8e-29       1     134 []       5     319 ..       5     319 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 3e-33
                 EEEEST.CHHHHHHHHHTTEEEEEES...CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   1 vlileplreeelellkeegvevevkd...ellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgyste 96 
                 v+++++l+++ l++l+e ++ v+  +   + +  + +e++++a++l+  s++ v+a++le++pkL+  ++++vG+Dn+D++a+++r +l++++p++ te
  CTQ30501.1   5 VILYKTLPDDLLQRLEE-HFSVTQVKnlrPETVSQHAEAFAQAEGLLGSSEK-VDAALLEKMPKLRATSTVSVGYDNFDVEALNARRVLLMHTPTVLTE 101
                 67888999999******.443333333556666788999999********98.********************************************** PP

                 HHHHHH............................................................................................. CS
                 xxxxxx............................................................................................. RF
  2-Hacid_dh  97 svAElt............................................................................................. 102
                 +vA+++                                                                                             
  CTQ30501.1 102 TVADTVmalvlstarrvvevaervkagewtksigpdwfgtdvhhktlgivgmgrigmalaqrahfgfgmpilynarrqhpqaeerfnarycdldtllqe 200
                 *************************************************************************************************** PP

                 .......................................................................................T-BHHHHHHHHH CS
                 .......................................................................................xxxxxxxxxxxx RF
  2-Hacid_dh 103 .......................................................................................aaTeeaqeniae 114
                                                                                                        +aT+e++ n+a+
  CTQ30501.1 201 adfvclilplseethhlfgqaqfakmkssaifinagrgpvvdeqaliaalqngeihaagldvfeheplakdspllslpnvvalphigSATHETRYNMAA 299
                 *************************************************************************************************** PP

                 HHHHHHHHHHTTCCGTTBCS CS
                 xxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 115 eaaenlvaflkgespanavn 134
                 +a++nl+++l+g+  +n+vn
  CTQ30501.1 300 CAVDNLIDALNGNVEKNCVN 319
                 *******************8 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.3      0.18   1.1e+03      34      75 ..      81     124 ..      66     131 .. 0.70
   2 !   19.5   0.0   1.4e-07   0.00084       2     115 ..     148     261 ..     147     278 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.18
                    HHHHHHHTTEEE-SSHHHHHHHC.SEEEE-SSS.HHHHHHHHHS CS
  NAD_binding_2  34 kveelvaegakaaesieelvasl.dvvitmvka.gkavdevieg 75 
                     ve+l a+++ +++++  l++++ d+v+ +v +  + v ev e+
     CTQ30501.1  81 DVEALNARRVLLMHTPTVLTETVaDTVMALVLStARRVVEVAER 124
                    56777788888888998888888888887765404455555555 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.4e-07
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstssped 96 
                    +g++G+G +G+ +a++        ++yn ++++ ++    +a+   ++  l++++d+v ++++ ++++ ++  +  ++++k+++i+i+ +   + d
     CTQ30501.1 148 LGIVGMGRIGMALAQRAHFGFGMPILYNARRQHPQAEERFNARY-CDLDTLLQEADFVCLILPLSEETHHLFGQaQFAKMKSSAIFINAGRGPVVD 242
                    79**************9755445556775554444433334444.467789*********************998899****************** PP

                    HHHHHHHHHHTT-EEEEEE CS
  NAD_binding_2  97 trelakelkekglkfldaP 115
                     + l ++l++ +++  +  
     CTQ30501.1 243 EQALIAALQNGEIHAAGLD 261
                    *******999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2701.32
//
Query:       CTQ30502.1  [L=236]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-92  308.5   7.9    2.8e-92  308.3   7.9    1.0  1  DUF3053   Protein of unknown function (DUF3053)


Domain annotation for each model (and alignments):
>> DUF3053  Protein of unknown function (DUF3053)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.3   7.9   1.6e-96   2.8e-92       2     218 ..      15     230 ..      14     232 .. 0.99

  Alignments for each domain:
  == domain 1  score: 308.3 bits;  conditional E-value: 1.6e-96
     DUF3053   2 llllvvlqLagCgdkepeqRkAFidfLqntvlrspgvavptLteaqkkafGdYasdYailtafsqqlnqavetslepvvdalqsirspqdyltrrdelr 100
                 ++ll+v++L+gC dke +qRkAFidfLqnt++rs g+++ptLt++qkk+fG+++sdYa+++++sqq++qa++ +l+pvvd++++ir+pqdy+t+r+ lr
  CTQ30502.1  15 AALLMVVSLSGCFDKEGDQRKAFIDFLQNTAMRS-GERLPTLTADQKKQFGPFVSDYAVIYGYSQQVSQAMDAGLRPVVDSVNAIRVPQDYMTQREPLR 112
                 689*******************************.**************************************************************** PP

     DUF3053 101 qaagalneleqqlqnakaqadkaraaLkqpddlkavydkayektVtqpanaltpllplaeallqqlvqvgdflqkqgnqvefegngvqfktqqqadqyN 199
                 qa+gal++l+qqlqnak+qad+a+ aLkq ddlk+v+d++y+k+Vt+pa+al+pl+p+a+ ++qqlvqvgdf+++qg+qv+f +ng+qf+t+qqa+qyN
  CTQ30502.1 113 QANGALGVLSQQLQNAKMQADAAHGALKQADDLKPVFDQVYAKVVTAPADALQPLIPAAQIFTQQLVQVGDFVAQQGTQVSFVANGIQFPTSQQASQYN 211
                 *************************************************************************************************** PP

     DUF3053 200 ellsaLneqqqellqaqks 218
                 +l+  L++q+q+++qa++ 
  CTQ30502.1 212 ALIGPLAAQHQAFNQAWTA 230
                 ****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.33
# Mc/sec: 2112.69
//
Query:       CTQ30503.1  [L=451]
Description: 4-hydroxybenzoate transporter PcaK [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-52  176.5  57.4      5e-36  124.4  24.3    2.0  2  MFS_1       Major Facilitator Superfamily
    1.6e-29  103.1  35.3    6.1e-28   97.9   8.6    2.1  2  Sugar_tr    Sugar (and other) transporter
    3.5e-08   33.2  10.7    3.5e-08   33.2  10.7    2.1  2  MFS_4       Uncharacterised MFS-type transporter YbfB
    4.9e-05   22.3   6.3    4.9e-05   22.3   6.3    2.1  2  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
      0.016   15.2   1.0       0.12   12.3   0.1    2.2  2  UPF0227     Uncharacterised protein family (UPF0227)
      0.027   13.0  38.7     0.0062   15.1  11.6    3.3  4  MFS_2       MFS/sugar transport protein
      0.091   11.7   0.9       0.16   10.9   0.1    1.7  2  DUF1512     Protein of unknown function (DUF1512)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4  24.3   1.9e-39     5e-36       2     234 ..      29     282 ..      28     285 .. 0.85
   2 !   66.0  30.5     1e-21   2.7e-18       1     179 [.     260     439 ..     260     450 .. 0.89

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 1.9e-39
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgag 100
                 ++++++ +++ +i+g++++  l ++ g+ +s++g ++++  +g av++l +G+l+dr+Gr++vl++++++f+ ++ll +fa+sl  l +lr+l+Glg g
  CTQ30503.1  29 FITVAMDGFDTAIIGFIAS-DLVQEWGVEKSALGPVMSAALVGLAVGALTAGPLADRIGRKKVLIMSIVVFGGFSLLTAFATSLNQLTLLRFLTGLGLG 126
                 89999**************.9*****************************************************88888966666************** PP

       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........... 188
                 a++p++a+l+++++p+++r++ + l+ +gf +G+ lg  l+++++ ++gW++v ++ +++ ll++v  ++llpe+ +    k +  ++           
  CTQ30503.1 127 AAMPNAATLMSEYAPERRRALLVNLMFVGFPMGSSLGGFLSAWMIPHYGWQSVLVLGGVMPLLLAVALIFLLPESVRYLVVKQHPAQRiaailrriapl 225
                 ****************************************************************99866666555555555555555588888777777 PP

       MFS_1 189 ........kgtgpaplvp........awkallkdpvlw...illialllfffgfsglltllplyl 234
                                  +        a++ ++++++     +l ++ +++ ++f++l+++lpl++
  CTQ30503.1 226 pkavefvlR--------EagqvkeksAIGVIFSPRYAVgtvMLCLTYFMGLLIFYLLTSWLPLLI 282
                 666666542........133344455899******774556566666666678888******975 PP

  == domain 2  score: 66.0 bits;  conditional E-value: 1e-21
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGl 97 
                 l+l++f+  l +++l+++lp +l ++ g+s s+++++++l+ lg ++++l+lG+l+d++ + +v+ +g ll++++ ++l+ f++s+  l+ v+ +++G 
  CTQ30503.1 260 LCLTYFMGLLIFYLLTSWLP-LLIRETGASMSQASIITALFPLGGGIGVLILGALMDKINPNKVVAVGWLLTGVF-VCLVgFSTSSLaLMGVMVFIAGS 356
                 6899****************.788999************************************************.5555588555559999999**** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepper 179
                  + ++ +++ al+a  +p + r+ +++++ +   +G ilg+  g++l+ ++l+++ +f +lai ++l+++  l+ ++++++ +
  CTQ30503.1 357 IMNGAQSSMPALAAGFYPTQGRATGVAWMLGIGRFGGILGAFSGAFLMqAQLSFETIFTLLAIPAFLSAIALLIKYRVSKSVP 439
                 ********************************************************************995334334333333 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   8.6   2.4e-31   6.1e-28       7     276 ..      30     273 ..      24     278 .. 0.84
   2 !   11.0  18.8   5.4e-05      0.14      44     189 ..     288     429 ..     280     435 .. 0.93

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 2.4e-31
                 HHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGG CS
    Sugar_tr   7 lggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevl 105
                 ++  + g+dt++ig++++ l     + + ++ks+        g ++s++lvG ++G+l+ag+l+dr+GRkk+l++++v+f   ++l+a+a+   s+ +l
  CTQ30503.1  30 ITVAMDGFDTAIIGFIASDLV----QEWGVEKSAL-------GPVMSAALVGLAVGALTAGPLADRIGRKKVLIMSIVVFGGFSLLTAFAT---SLNQL 114
                 455899999999999987776....5666666544.......67***********************************************...9**** PP

                 GGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---HHHHHHTT- CS
    Sugar_tr 106 ivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPESPrylvekgk 203
                 ++ R+l+G+g+G+a   + +++sE+Ap++ R  lv l  ++  +G  ++ ++ + +    +   w+  l l  v++lll+++l ++lPES rylv k++
  CTQ30503.1 115 TLLRFLTGLGLGAAMPNAATLMSEYAPERRRALLVNLMFVGFPMGSSLGGFLSAWMIPHYG---WQSVLVLGGVMPLLLAVALiFLLPESVRYLVVKQH 210
                 *************************************************999999988777...**********9999988774779*******99998 PP

                 HH.HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHH CS
    Sugar_tr 204 ee.eakevlaklrgeedadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyy 276
                    +  ++l+++   ++a + +  e+ + +++       ++ ++s      r  +g v+ +++ + G   i+y+
  CTQ30503.1 211 PAqRIAAILRRIAPLPKAVEFVLREAGQVKEK-----SAIGVIFSP-----RYAVGTVMLCLTYFMG-LLIFYL 273
                 77677888888877777777777777777766.....223444444.....6788888888888888.455554 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 5.4e-05
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s ++ ++i+++f +G+ iG l++g l+d++   k+ +++ +l+ +  +l ++++  +s+ ++ v+ +++G  + +a+  +P +++ + p++ R + v +
  CTQ30503.1 288 SMSQASIITALFPLGGGIGVLILGALMDKINPNKVVAVGWLLTGVFVCLVGFST--SSLALMGVMVFIAGSIMNGAQSSMPALAAGFYPTQGRATGVAW 384
                 67899*************************************************..78************************************99999 PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGG CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilll 189
                       fG +++a++g++l + +    +   + l ++pa l +i+ll
  CTQ30503.1 385 MLGIGRFGGILGAFSGAFLMQAQL--SFETIFTLLAIPAFLSAIALL 429
                 99999**************99888..799*********977777654 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2  10.7   1.4e-11   3.5e-08      18     172 ..      48     201 ..      43     225 .. 0.83
   2 ?    0.2  17.3      0.14   3.7e+02     187     360 ..     251     426 ..     227     431 .. 0.69

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.4e-11
       MFS_4  18 allaegqlslsqagllaaaNylGYLvGallaafalsagaeRlr.llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarr 115
                 +l++e +++ s++g + +a ++G  vGal a   l+ +  R + l +++++     l  a+++s+  ++l+Rfl+G++ ++++  +++l+ + a + rr
  CTQ30503.1  48 DLVQEWGVEKSALGPVMSAALVGLAVGALTA-GPLADRIGRKKvLIMSIVVFGGFSLLTAFATSLNQLTLLRFLTGLGLGAAMPNAATLMSEYAPERRR 145
                 5788999999*******************99.5566666666646666677777888899999************************************ PP

       MFS_4 116 ervgallfaGvGlGiavsgll.vllllqlglsasslWlalavlsavllllvalllpra 172
                 + +  l+f G  +G  ++g l ++++ ++g+++    ++ +v+ ++l ++++ llp++
  CTQ30503.1 146 ALLVNLMFVGFPMGSSLGGFLsAWMIPHYGWQSV--LVLGGVMPLLLAVALIFLLPES 201
                 *******************872666677777766..78999*************9943 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.14
       MFS_4 187 eqkslpllalllaYglaGfGYiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllsllspsplglivs 285
                 ++  ++++ l l+Y++  + + +   +l++++r+++++  +++ +  l+ l+  +gvl+   + ++ + ++++a+  l+ +v v l   s+s l+l+  
  CTQ30503.1 251 PRYAVGTVMLCLTYFMGLLIFYLLTSWLPLLIRETGASMSQASIITALFPLGGGIGVLILGALMDKINPNKVVAVGWLLTGVFVCLVGFSTSSLALMGV 349
                 556678888999999888888888899999999999999999999999999999999999999999999999999998876655555555554444444 PP

       MFS_4 286 svllGltflaitalvlqlarelappatrrllg..lmTasfgigQilGpllasllaeatgslalallvaaaalvlaal 360
                  v + +  +   ++ +++      p++ r+ g   m  +   g ilG+   + l++a  s++    + a  ++l+a+
  CTQ30503.1 350 MVFIAGSIMNGAQSSMPALAAGFYPTQGRATGvaWMLGIGRFGGILGAFSGAFLMQAQLSFETIFTLLAIPAFLSAI 426
                 44456777777777777655544444444444003433333456888888888888887777777777776666665 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   6.3   1.9e-08   4.9e-05     227     378 ..      24     175 ..      17     181 .. 0.91
   2 !    6.6  15.5    0.0012       3.1     163     377 ..     165     407 ..     164     416 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.9e-08
  MFS_1_like 227 viifllvalilgmswgiienFlflYL.kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhg 324
                 +++++++++ +  +  +i  F+   L +e g  ++ lG ++    v+  +  ++a  l +++G  k+li++++++    ll a+ +++  + ++ +L g
  CTQ30503.1  24 ILALCFITVAMDGFDTAIIGFIASDLvQEWGVEKSALGPVMSAALVGLAVGALTAGPLADRIGRKKVLIMSIVVFGGFSLLTAFATSLNQLTLLRFLTG 122
                 5789999999999999******99999************************************************9877788888************** PP

  MFS_1_like 325 isfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlks 378
                 + +g+    a++ +s+ ap++ +a +  l+  + f +G+ lG +++  ++ +++
  CTQ30503.1 123 LGLGAAMPNAATLMSEYAPERRRALLVNLM-FVGFPMGSSLGGFLSAWMIPHYG 175
                 ************************999986.46689999999999977776665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0012
  MFS_1_like 163 fitGilidhysvnllp.....ysallyvlaallvisllvvlilnetekesklkvtksl......................qvllnilknpevi....if 230
                 f++ ++i hy  + +      +  ll+v++++l+  ++  l+    +++++  ++++l                      ++ + ++  p+++    ++
  CTQ30503.1 165 FLSAWMIPHYGWQSVLvlggvMPLLLAVALIFLLPESVRYLV---VKQHPAQRIAAILrriaplpkavefvlreagqvkeKSAIGVIFSPRYAvgtvML 260
                 778899999998765555563322333333344434433333...34455555555557889*****************98899999999986222257 PP

  MFS_1_like 231 llvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaii.enawlvlpievLhgisfg 328
                 +l+ ++   ++ ++ ++l l + e gas + +++++al  ++  +  ++   l++k+   k++ ++ l++ +  +l+++  +++ l+ ++ ++ g  + 
  CTQ30503.1 261 CLTYFMGLLIFYLLTSWLPLLIRETGASMSQASIITALFPLGGGIGVLILGALMDKINPNKVVAVGWLLTGVFVCLVGFStSSLALMGVMVFIAGSIMN 359
                 7777777788888888899999**************9999987666677789***************************9999999*********9999 PP

  MFS_1_like 329 llwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlk 377
                    +++   ++ + p + +atg + + g+   +G+ lG++ G +l + +
  CTQ30503.1 360 GAQSSMPALAAGFYPTQGRATGVAWMLGI-GRFGGILGAFSGAFLMQAQ 407
                 9********************99998888.4589999999998888654 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.13   3.4e+02      61      87 ..      66      92 ..      48      99 .. 0.87
   2 ?   12.3   0.1   4.6e-05      0.12      64      93 ..     158     187 ..     131     192 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.13
     UPF0227 61 illvGssLGGyyatrlgerfglrqvll 87
                 +lvG + G ++a  l+ r g ++vl+
  CTQ30503.1 66 AALVGLAVGALTAGPLADRIGRKKVLI 92
                689*******************99997 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.6e-05
     UPF0227  64 vGssLGGyyatrlgerfglrqvllnPalkp 93 
                 +GssLGG++++++   +g ++vl+   + p
  CTQ30503.1 158 MGSSLGGFLSAWMIPHYGWQSVLVLGGVMP 187
                 69********************98666555 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   9.1   4.7e-05      0.12     225     341 ..      21     138 ..      14     178 .. 0.72
   2 ?   -0.2   1.1      0.11   2.8e+02     270     318 ..     158     206 ..     139     223 .. 0.66
   3 ?   15.1  11.6   2.4e-06    0.0062     227     340 ..     258     370 ..     226     382 .. 0.88
   4 ?   -1.7   0.2      0.31   7.9e+02     392     421 ..     401     430 ..     372     436 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.7e-05
       MFS_2 225 aflillllfllaalalgvlnglllYyltyv...lg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflv 319
                 +++il+l+f+++a+  g+  ++  + + +    +g ++sa   ++ ++ ++ ++g++ + pla r+g+k++ ++++++   +++l+ ++  ++l  +++
  CTQ30503.1  21 QWMILALCFITVAMD-GFDTAIIGFIASDLvqeWGvEKSALGPVMSAALVGLAVGALTAGPLADRIGRKKVLIMSIVVFGGFSLLTAFA--TSLNQLTL 116
                 666666666666654.4444444455544412256666677777777888889**********************99999999998888..89999999 PP

       MFS_2 320 llviagfgvgvaallpwsmlad 341
                 l +++g+g+g+a+  ++ ++++
  CTQ30503.1 117 LRFLTGLGLGAAMPNAATLMSE 138
                 9999999998888777666664 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.11
       MFS_2 270 isallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllfl 318
                 +++ lg +l +++  ++g + + +lg ++ ++l v +++l p+++  ++
  CTQ30503.1 158 MGSSLGGFLSAWMIPHYGWQSVLVLGGVMPLLLAVALIFLLPESVRYLV 206
                 4555777888888888887766666655555555544444366665555 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 2.4e-06
       MFS_2 227 lillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviag 325
                 ++l l++++ +l +++l ++l + ++ +  ++s+as++++++ +++ +g+++  +l  +++  +++++g llt v+  lv +  +s+l+l+ v+++iag
  CTQ30503.1 258 VMLCLTYFMGLLIFYLLTSWLPLLIRETGASMSQASIITALFPLGGGIGVLILGALMDKINPNKVVAVGWLLTGVFVCLVGFS-TSSLALMGVMVFIAG 355
                 4566778888899999************99***********************************************999999.*************** PP

       MFS_2 326 fgvgvaallpwsmla 340
                  ++ +a++ ++++ a
  CTQ30503.1 356 SIMNGAQSSMPALAA 370
                 **9999999998876 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.31
       MFS_2 392 vqspqvvlalrllyavlpavlllvallllv 421
                 +   q++l++ +++++l +  +l a++ll+
  CTQ30503.1 401 AFLMQAQLSFETIFTLLAIPAFLSAIALLI 430
                 333344444444444443333333344444 PP

>> DUF1512  Protein of unknown function (DUF1512)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.81   2.1e+03     169     200 ..      57      88 ..      45      97 .. 0.76
   2 ?   10.9   0.1   6.4e-05      0.16     149     200 ..     269     320 ..     263     326 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.81
     DUF1512 169 ekalkaflkgkPvGDgaGplvaakllekkekk 200
                 ++al  ++++  vG ++G l+a+ l+++  +k
  CTQ30503.1  57 KSALGPVMSAALVGLAVGALTAGPLADRIGRK 88 
                 56777788888899999999999999886555 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 6.4e-05
     DUF1512 149 vlllqlqmllplllklaeayekalkaflkgkPvGDgaGplvaakllekkekk 200
                 ++ + l+  lpll++++ a ++ ++ ++   P+G g+G l+ + l++k + +
  CTQ30503.1 269 LIFYLLTSWLPLLIRETGASMSQASIITALFPLGGGIGVLILGALMDKINPN 320
                 56778999**************************************996654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 3280.16
//
Query:       CTQ30504.1  [L=96]
Description: putative transcriptional regulator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-05   25.1   0.0    1.9e-05   24.6   0.0    1.2  1  HTH_3            Helix-turn-helix
    7.9e-05   22.9   0.0    9.6e-05   22.7   0.0    1.2  1  HTH_31           Helix-turn-helix domain
    0.00029   21.0   0.0    0.00034   20.7   0.0    1.1  1  MqsA_antitoxin   Antitoxin component of bacterial toxin-antit
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.028   14.2   0.0    1.3  1  MerR             MerR family regulatory protein
      0.097   13.3   0.0       0.12   13.0   0.0    1.1  1  UAE_UbL          Ubiquitin/SUMO-activating enzyme ubiquitin-l
       0.12   12.3   0.0       0.19   11.7   0.0    1.3  1  Phage_terminase  Phage terminase small subunit


Domain annotation for each model (and alignments):
>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   6.3e-09   1.9e-05       2      43 ..      39      80 ..      38      82 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 6.3e-09
                HHHHHHTTHHHHHHHHHHTSSHHHHHHHHTTSSCSBHHHHHH CS
       HTH_3  2 kelRkqlglsqeeLAeklGvsrstisriEnGernPsletlkk 43
                ++lRk  gl + ++A ++Gvs++ ++ +E+ + +Ps++ lk+
  CTQ30504.1 39 EQLRKGTGLKIDDFANVMGVSVAMVREWESRRVRPSPTELKL 80
                689************************************997 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.2e-08   9.6e-05       7      48 ..      39      79 ..      36      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.2e-08
      HTH_31  7 ralReraGLsqeevAerlgvsestlsrlEqGrrgrpspavle 48
                 +lR+  GL+ ++ A   gvs++ ++ +E+ r  rpsp  l 
  CTQ30504.1 39 EQLRKGTGLKIDDFANVMGVSVAMVREWESRRV-RPSPTELK 79
                69*******************************.8***9874 PP

>> MqsA_antitoxin  Antitoxin component of bacterial toxin-antitoxin system, MqsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.1e-07   0.00034      72     127 ..      36      91 ..      13      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.1e-07
  MqsA_antitoxin  72 afiarvrkkleldqreaaeifGgGvnafsryekGkvrpplalvkllklldrhPell 127
                     ++ +++rk  +l+  + a+++G+ v     +e+ +vrp+ + +kl++l++  P+l 
      CTQ30504.1  36 SEFEQLRKGTGLKIDDFANVMGVSVAMVREWESRRVRPSPTELKLMRLIQANPQLS 91 
                     46789************************************************985 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   9.2e-06     0.028       1      27 [.      48      74 ..      48      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.2e-06
                EHHHHHHHHTTTHHHHHHHHHTTSSTS CS
        MerR  1 tIgevAeltGvsprtLRyYEreGLipp 27
                +I ++A   Gvs+ ++R +E++   p+
  CTQ30504.1 48 KIDDFANVMGVSVAMVREWESRRVRPS 74
                58899***************9866555 PP

>> UAE_UbL  Ubiquitin/SUMO-activating enzyme ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     4e-05      0.12      23      81 ..       2      61 ..       1      68 [. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4e-05
     UAE_UbL 23 gleepevsv.nggatilYlsseedeeeddnldkkLaelg.ikngsiLtvdDfsqefkvnlv 81
                ++++p +++ ++ + i++ ++++++ +++  +   +e++ +++g+ L++dDf + + v++ 
  CTQ30504.1  2 EYKDPVFELlSSLEHIVF-KDDNQKLTSNRKSTVFSEFEqLRKGTGLKIDDFANVMGVSVA 61
                688999999677777886.6666665555555599***779***********999888886 PP

>> Phage_terminase  Phage terminase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.4e-05      0.19      19      43 ..      43      67 ..      35      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.4e-05
  Phage_terminase 19 sggtlklkdIAkvLdvsestvrkWK 43
                     +g  lk+ d A+v++vs   vr+W 
       CTQ30504.1 43 KGTGLKIDDFANVMGVSVAMVREWE 67
                     56779999****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 700.62
//
Query:       CTQ30505.1  [L=80]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 630.28
//
Query:       CTQ30506.1  [L=70]
Description: major cold shock protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-33  112.0   0.2    9.5e-33  111.9   0.2    1.0  1  CSD       'Cold-shock' DNA-binding domain
    3.2e-05   23.5   0.5    5.3e-05   22.8   0.5    1.3  1  OB_RNB    Ribonuclease B OB domain


Domain annotation for each model (and alignments):
>> CSD  'Cold-shock' DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.2   1.1e-36   9.5e-33       1      65 [.       5      69 ..       5      70 .] 0.98

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 1.1e-36
                EEEEEEEEETTTTEEEEEETTSS-EEEEETTTS-STT.TS--STSEEEEEEEECSSCEEEEEEEE CS
         CSD  1 ltGtVkwfnakkgfGFItredgdkdvFvHvsaiqgdgfrsLqegqeVeFevvegkkgpeAanVtk 65
                +tG+Vkwfna+kgfGFIt++dg+kdvFvH+saiq+dg++sL+egq+V+F++++g kgp A nVt 
  CTQ30506.1  5 MTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTS 69
                79*************************************************************96 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.5   5.9e-09   5.3e-05       7      29 ..      15      37 ..      12      39 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.9e-09
                SSS-EEEEECT.TEEEEE-HHHH CS
      OB_RNB  7 kkGFGFlipdegkeDifippeqm 29
                +kGFGF+ pd+g++D+f++ + +
  CTQ30506.1 15 DKGFGFITPDDGSKDVFVHFSAI 37
                69****************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       253  (0.0141112); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 599.31
//
Query:       CTQ30507.1  [L=539]
Description: ABC transport system ATP-binding component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-35  122.0   0.0    5.6e-16   59.3   0.0    3.3  2  ABC_tran      ABC transporter
    5.4e-19   69.1   5.7    0.00027   20.9   0.1    4.2  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    3.5e-10   39.7   0.0     0.0022   17.5   0.0    4.2  4  SMC_N         RecF/RecN/SMC N terminal domain
    2.9e-05   24.0   0.0      0.082   12.8   0.0    2.3  2  RsgA_GTPase   RsgA GTPase
      4e-05   24.1  21.3     0.0014   19.0   2.7    3.2  2  AAA_16        AAA ATPase domain
    7.4e-05   23.0   2.4       0.12   12.6   0.2    3.1  3  AAA_22        AAA domain
    7.6e-05   22.7   0.9      0.052   13.5   0.1    2.9  2  NACHT         NACHT domain
    0.00069   19.7   0.0       0.93    9.6   0.0    2.7  2  MMR_HSR1      50S ribosome-binding GTPase
     0.0016   18.5   0.6        1.2    9.1   0.0    2.6  2  AAA_5         AAA domain (dynein-related subfamily)
     0.0021   18.5   0.3       0.43   11.0   0.0    2.6  2  AAA           ATPase family associated with various cellular 
     0.0024   17.7   0.0        1.6    8.3   0.0    2.3  2  AAA_15        AAA ATPase domain
     0.0032   17.2   9.3       0.28   10.9   0.0    3.4  3  AAA_30        AAA domain
     0.0076   15.5   0.0        1.1    8.4   0.0    2.3  2  NB-ARC        NB-ARC domain
      0.008   15.9   0.1       0.74    9.6   0.0    2.5  2  AAA_29        P-loop containing region of AAA domain
     0.0086   16.3   0.8       0.57   10.5   0.0    3.6  2  SbcCD_C       Putative exonuclease SbcCD, C subunit
  ------ inclusion threshold ------
      0.012   15.4   0.0       0.45   10.2   0.0    2.4  2  AAA_24        AAA domain
      0.015   14.9   0.8       0.25   10.9   0.1    2.3  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.015   15.8   5.6       0.59   10.6   0.6    2.8  3  AAA_23        AAA domain
      0.026   14.5   0.0       0.31   11.1   0.0    2.5  2  AAA_14        AAA domain
       0.03   14.3   0.5        1.2    9.1   0.1    2.5  2  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
      0.033   14.6   0.1        1.9    8.9   0.0    2.3  2  RNA_helicase  RNA helicase
      0.037   13.6   0.0        1.5    8.4   0.0    2.3  2  FeoB_N        Ferrous iron transport protein B
      0.038   14.2   5.8       0.28   11.4   0.0    3.3  3  AAA_28        AAA domain
      0.084   12.8   0.2        1.5    8.7   0.0    2.2  2  ATPase_2      ATPase domain predominantly from Archaea
      0.089   12.7   0.9        4.7    7.1   0.0    2.6  2  MobB          Molybdopterin guanine dinucleotide synthesis pr
       0.14   12.4   0.1         24    5.2   0.0    2.5  2  Roc           Ras of Complex, Roc, domain of DAPkinase
       0.14   12.2  10.7       0.16   12.0   9.3    1.8  1  ABC_tran_Xtn  ABC transporter
       0.17   11.6   1.3        1.8    8.3   0.2    2.3  2  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
       0.29   10.9   2.8          8    6.2   2.1    2.1  2  AAA_11        AAA domain
       0.32   10.6   0.0       0.32   10.6   0.0    3.7  4  AAA_25        AAA domain
       0.35   11.0   0.0       0.35   11.0   0.0    3.4  3  AAA_33        AAA domain
        0.4    9.3   2.3         31    3.0   0.0    2.9  3  AAA_13        AAA domain
       0.49   10.9   5.7        1.7    9.2   0.0    3.3  2  AAA_18        AAA domain
       0.92    9.1   4.3        8.2    6.0   0.0    2.9  3  SRP54         SRP54-type protein, GTPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   1.1e-18   5.6e-16      12     137 .]      36     175 ..      27     175 .. 0.84
   2 !   58.5   0.0   1.9e-18     1e-15       6     137 .]     362     487 ..     358     487 .. 0.69

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 1.1e-18
                 SEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..............................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................x RF
    ABC_tran  12 ekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..............................e 80 
                 ++ ++vG+nG GK+ Ll+llagl +p+ G+i             +  + ++++ q+p+l pe+t+++                               +
  CTQ30507.1  36 SLCGLVGRNGVGKTRLLRLLAGLDSPAGGHI-------------ERAAAVAWVAQQPTLTPETTLATLlgyasvfaalsrleqgqgladdfdlldghwD 121
                 5789***************************.............67899**************998889999999999888888888777777776655 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  +++++ a ++ +l+ + +++    + sLSgG++ +  l+ a+++ ++ lllDEpt+
  CTQ30507.1 122 LTDRLSLAFREADLPPFSADRP---AFSLSGGERMKALLCGAFVSGADYLLLDEPTN 175
                 5556666666666666555554...7******************************8 PP

  == domain 2  score: 58.5 bits;  conditional E-value: 1.9e-18
                 EEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH.......HHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren.......esdeeiekalsklglke 96 
                 + +    ++a+ G+nG+GK+tLlk+l+gl++ ++G+++l               + ++l q+ +ql+  l+v  +        ++  + + l++l+l  
  CTQ30507.1 362 WRIDGPMRIALKGPNGCGKTTLLKTLLGLEQAASGDVRLS-------------VSAAYLDQHlTQLDLSLSVMAHlsledtpLDEGLLRTRLAQLQLGA 447
                 556666789****************************555.............4444444444444444443333332211223333666666666666 PP

                 TTCBGESTTSGGS-HHHHHHHHHHHHHHHT..SSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
    ABC_tran  97 lkdtvvksspssLSgGqkqrvalarallkk..pkllllDEpta 137
                    ++v+   s LSgG++ + ala++l+++  ++llllDEpt+
  CTQ30507.1 448 ---DKVTLPLSALSGGERLKAALACVLWRRepAQLLLLDEPTN 487
                 ...4554457******************874469********8 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   2.2e-05     0.012       3      22 ..      39      58 ..      37      72 .. 0.87
   2 !   13.1   0.0   0.00012     0.064     225     279 ..     135     186 ..      98     207 .. 0.71
   3 !   19.6   0.0   1.2e-06   0.00064       3      26 ..     371     399 ..     370     444 .. 0.74
   4 !   20.9   0.1   5.1e-07   0.00027     230     274 ..     450     493 ..     445     504 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.2e-05
      AAA_21  3 vliGpNgsGKSnLLdaldll 22
                +l+G+Ng+GK+ LL++l +l
  CTQ30507.1 39 GLVGRNGVGKTRLLRLLAGL 58
                69***************998 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00012
      AAA_21 225 engdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrll 279
                  +++  ++pa++lS G +  + l  a+ + +   + ll+DEp n+L+ +  + l+
  CTQ30507.1 135 LPPFSADRPAFSLSGGERMKALLCGAFVSGA---DYLLLDEPTNHLDRQGREWLY 186
                 345566899********************99...77**********965555555 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 1.2e-06
      AAA_21   3 vliGpNgsGKSnLLdaldllarl.....d 26 
                 +l GpNg+GK++LL++l +l ++     +
  CTQ30507.1 371 ALKGPNGCGKTTLLKTLLGLEQAasgdvR 399
                 689***************99776544440 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 5.1e-07
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkl 274
                   lp++ lS G +  +al+  l+r+ +   lll+DEp n+L+ + 
  CTQ30507.1 450 VTLPLSALSGGERLKAALACVLWRREPA-QLLLLDEPTNHLDLAS 493
                 679999********************99.************9855 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.028        15      20      41 ..      31      52 ..      25      56 .. 0.85
   2 ?    4.2   0.0     0.049        26     137     213 ..     147     217 ..      79     221 .. 0.84
   3 !    7.5   0.0    0.0047       2.5      28      49 ..     371     389 ..     365     401 .. 0.82
   4 !   17.5   0.0   4.1e-06    0.0022     129     203 ..     449     519 ..     401     531 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.028
                EETTSSEEEEEESTTSSHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 20 lpfsksftaivGpNGSGKsnll 41
                + +++s+  +vG+NG GK+ ll
  CTQ30507.1 31 VSLEPSLCGLVGRNGVGKTRLL 52
                678899999*********9876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.049
                 S-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 137 LSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtk 213
                 LSgGe+     aLl     v+ a   llDe   +LD + ++ + + l++ +     ++ s+++e+l+++ +++ +t 
  CTQ30507.1 147 LSGGERM---KALL-CGAFVSGADYLLLDEPTNHLDRQGREWLYHQLESWQ--GGALIASHDRELLTRMPRIIELTP 217
                 7777752...2222.333456677789********************9988..8899*********99999988765 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0047
                 EEEESTTSSHHHHHHHHHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAilFvLG 49 
                 a+ GpNG+GK+ ll  +   LG
  CTQ30507.1 371 ALKGPNGCGKTTLLKTL---LG 389
                 688**********9988...55 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 4.1e-06
                 CTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 129 sagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemle 203
                 ++ +  ++LSgGe+  +ala +  + + +pa l llDe   +LD + ++++ + l +      ++v+s++e +l+
  CTQ30507.1 449 KVTLPLSALSGGERLKAALACV--LWRREPAQLLLLDEPTNHLDLASTQAIESALAAFP--GAMLVVSHDEAFLQ 519
                 55566669******99999999..799***************************99888..77899999988876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0026       1.4      91     124 ..      27      60 ..      10      72 .. 0.78
   2 !   12.8   0.0   0.00016     0.082      89     133 ..     356     401 ..     332     430 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0026
                  HHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  91 eelkellkdktsvlvGqSGvGKStLinallpele 124
                    l+  l+ +++ lvG  GvGK+ L+  l++ ++
   CTQ30507.1  27 GPLSVSLEPSLCGLVGRNGVGKTRLLRLLAGLDS 60 
                  5677788999999**************9998655 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00016
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevsek 133
                   ++ l+ ++++   ++l G+ G GK+tL+++ll+ ++++ g+v+ +
   CTQ30507.1 356 PAAPLNWRIDGpMRIALKGPNGCGKTTLLKTLLGLEQAASGDVRLS 401
                  455666677775668899****************999999999865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  11.2     0.073        39      23     127 ..      34     161 ..      23     364 .. 0.72
   2 !   19.0   2.7   2.6e-06    0.0014      22     161 ..     365     503 ..     351     511 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.073
      AAA_16  23 rpelvllsGesGvGKsslvrellr.......alekdg.giflrgkcdql.esa..ipysalaqalareellrqlldeaesaeleawrekleeala.... 106
                 +p+l+ l+G  GvGK++l+r l+        ++e++  + +++++ +   e    ++++ +a+++a+ + l+q    a++ +l + +  l+++l+    
  CTQ30507.1  34 EPSLCGLVGRNGVGKTRLLRLLAGldspaggHIERAAaVAWVAQQPTLTpE-TtlATLLGYASVFAALSRLEQGQGLADDFDLLDGHWDLTDRLSlafr 131
                 568899*****************7333333333333212223333333321.12222233444444444444444444444444444444444447787 PP

      AAA_16 107 .....avpelagaea....srllellkrll 127
                      + +++++a +    +r+ +ll  ++
  CTQ30507.1 132 eadlpPFSADRPAFSlsggERMKALLCGAF 161
                 776663333333333222244444444444 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 2.6e-06
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala.......avpela 112
                 ++p  + l G+ G+GK++l+++ll  le++    ++g+ + + sa+ +++ l+q+    ++++ l  e++  + +  r++l +          + ++l+
  CTQ30507.1 365 DGPMRIALKGPNGCGKTTLLKTLL-GLEQA----ASGDVRLSVSAAYLDQhLTQLDLSLSVMAHLSLEDTPLDEGLLRTRLAQLQLgadkvtlPLSALS 458
                 566778899***************.67777....45544444333333333777777788888888885555555555544443333434433444444 PP

      AAA_16 113 gaeasrllellkrllallsrderplvlvlDdlqwadeaslqllaaLlrl 161
                 g   +rl ++l+  l + ++ ++ l+l+ +    +d as q++++ l++
  CTQ30507.1 459 GG--ERLKAALACVLWRREP-AQ-LLLLDEPTNHLDLASTQAIESALAA 503
                 44..8888887777733333.44.5555556779999999998877665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0029       1.5      10      32 ..      40      62 ..      34     116 .. 0.72
   2 ?   -2.3   0.1       9.4   4.9e+03      90      90 ..     253     253 ..     201     320 .. 0.64
   3 !   12.6   0.2   0.00023      0.12       8      31 ..     370     393 ..     365     502 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0029
      AAA_22 10 vtGesGtGKTtllrrlleqldee 32
                ++G  G+GKT+llr l+  +  +
  CTQ30507.1 40 LVGRNGVGKTRLLRLLAGLDSPA 62
                89************999876544 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 9.4
      AAA_22  90 a 90 
                 +
  CTQ30507.1 253 R 253
                 2 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 0.00023
      AAA_22   8 lvvtGesGtGKTtllrrlleqlde 31 
                 +++ G+ G+GKTtll++ll   ++
  CTQ30507.1 370 IALKGPNGCGKTTLLKTLLGLEQA 393
                 6889**************987643 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.012       6.3       3      21 ..      38      56 ..      36      91 .. 0.84
   2 !   13.5   0.1   9.9e-05     0.052       3      21 ..     370     388 ..     368     406 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.012
                EEEEC-TTTCHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkla 21
                + l G++G+GKT Ll+ la
  CTQ30507.1 38 CGLVGRNGVGKTRLLRLLA 56
                5689***********9876 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 9.9e-05
                 EEEEC-TTTCHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkla 21 
                 ++l+G++G+GKTtLl+ l 
  CTQ30507.1 370 IALKGPNGCGKTTLLKTLL 388
                 799************9985 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0018      0.93       2      37 ..      38      86 ..      37     117 .. 0.77
   2 !    7.2   0.0    0.0096       5.1       1      25 [.     369     394 ..     369     429 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0018
                EEEEESTTSSHHHHHHHHHT.............STEEESSSTTSSSSEE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltg.............ekaivsdkpgtTrdin 37
                +++vGr  vGK+ L++ l g             ++a v+++p  T +++
  CTQ30507.1 38 CGLVGRNGVGKTRLLRLLAGldspagghieraaAVAWVAQQPTLTPETT 86
                689***************9877776666654433556666666665554 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0096
                 EEEEEESTTSSHHHHHHHHHTS.TEE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kai 25 
                 ++a+ G    GK+tL+++l+g  +a 
  CTQ30507.1 369 RIALKGPNGCGKTTLLKTLLGLeQAA 394
                 68999**************9942444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1      0.01       5.5       4      21 ..      40      57 ..      38      60 .. 0.92
   2 !    9.1   0.0    0.0023       1.2       3      21 ..     371     389 ..     369     416 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.01
                EE--SSSSHHHHHHHGGG CS
       AAA_5  4 LvGppGtgKselaerlaa 21
                LvG  G+gK++l + la 
  CTQ30507.1 40 LVGRNGVGKTRLLRLLAG 57
                9*************9985 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0023
                 EEE--SSSSHHHHHHHGGG CS
       AAA_5   3 lLvGppGtgKselaerlaa 21 
                  L+Gp G+gK++l + l+ 
  CTQ30507.1 371 ALKGPNGCGKTTLLKTLLG 389
                 59************99875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.064        34       3      20 ..      40      57 ..      38      76 .. 0.90
   2 !   11.0   0.0   0.00082      0.43       2      19 ..     371     388 ..     370     414 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.064
                EESSTTSSHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavak 20
                l+G  G+GKT l + +a 
  CTQ30507.1 40 LVGRNGVGKTRLLRLLAG 57
                89***********99985 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00082
                 EEESSTTSSHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakava 19 
                  l Gp G+GKT+l k + 
  CTQ30507.1 371 ALKGPNGCGKTTLLKTLL 388
                 588**********99876 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0031       1.6      19      43 ..      31      55 ..      26      61 .. 0.87
   2 !    6.9   0.0    0.0084       4.4      30      43 ..     374     387 ..     369     412 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0031
      AAA_15 19 idlseeltvliGkNnsGKSsileal 43
                ++l+++l  l+G+N++GK+ +l++l
  CTQ30507.1 31 VSLEPSLCGLVGRNGVGKTRLLRLL 55
                678888999*************998 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0084
      AAA_15  30 GkNnsGKSsileal 43 
                 G+N++GK+++l+ l
  CTQ30507.1 374 GPNGCGKTTLLKTL 387
                 9**********988 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00087      0.46      20      61 ..      37      78 ..      27     115 .. 0.84
   2 ?    0.1   0.4       1.1   5.7e+02      52      95 ..     235     278 ..     218     290 .. 0.62
   3 !   10.9   0.0   0.00053      0.28      22      96 ..     371     484 ..     365     519 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00087
      AAA_30 20 vavltGpAGtGKttalkalreaweaaggrviglAptgkaAkv 61
                ++ l+G+ G GKt +l+ l+ +   agg++  +A  + +A++
  CTQ30507.1 37 LCGLVGRNGVGKTRLLRLLAGLDSPAGGHIERAAAVAWVAQQ 78
                6779***********************999999988888876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.1
      AAA_30  52 lAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivD 95 
                 +A +++a ++L++++  + +t a++ k++++++r +++tl  vD
  CTQ30507.1 235 MAEQQAARAALEHAVTDRRRTRARMQKEHDAAQRRSAQTLRTVD 278
                 45555555556666666666666666666654455555555555 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00053
      AAA_30  22 vltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk....................................... 81 
                 +l+Gp G GKtt+lk+l  + +aa g+v +  + +   + L+ +l++  s +a+l  + +                                       
  CTQ30507.1 371 ALKGPNGCGKTTLLKTLLGLEQAASGDVRLSVSAAYLDQHLT-QLDLSLSVMAHLSLEDTpldegllrtrlaqlqlgadkvtlplsalsggerlkaala 468
                 689***************999999888877666666656666.33333333333322222333333333333444444444444444446666666666 PP

      AAA_30  82 .grarlepgtllivDE 96 
                    +r ep++ll+ DE
  CTQ30507.1 469 cVLWRREPAQLLLLDE 484
                 6444566666666666 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.027        14      17      38 ..      34      53 ..      23      82 .. 0.80
   2 !    8.4   0.0    0.0021       1.1      22      42 ..     369     389 ..     363     440 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.027
                TSCSEEEEEEESTTSSHHHHHH CS
      NB-ARC 17 elqslvvalvGmgGvGKttlak 38
                e+   + +lvG+ GvGKt l++
  CTQ30507.1 34 EPS--LCGLVGRNGVGKTRLLR 53
                555..889**********9976 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0021
                 EEEEEESTTSSHHHHHHHHCC CS
      NB-ARC  22 vvalvGmgGvGKttlakqiln 42 
                  +al G  G+GKttl+k  l 
  CTQ30507.1 369 RIALKGPNGCGKTTLLKTLLG 389
                 5899***********998765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.11        56      25      39 ..      38      52 ..      24      58 .. 0.80
   2 !    9.6   0.0    0.0014      0.74      19      39 ..     364     384 ..     358     395 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.11
      AAA_29 25 tlltGpsGsGKSTll 39
                + l+G++G+GK+ ll
  CTQ30507.1 38 CGLVGRNGVGKTRLL 52
                5599*******9876 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0014
      AAA_29  19 idlkg..atlltGpsGsGKSTll 39 
                 id  g   + l Gp+G GK+Tll
  CTQ30507.1 364 ID--GpmRIALKGPNGCGKTTLL 384
                 44..44467899**********9 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.56   2.9e+02      63      78 ..     164     179 ..     125     190 .. 0.61
   2 !   10.5   0.0    0.0011      0.57      30      84 ..     454     497 ..     443     503 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.56
     SbcCD_C  63 alrlvfLDEAFsklDe 78 
                   + ++LDE  + lD 
  CTQ30507.1 164 GADYLLLDEPTNHLDR 179
                 2344566666666665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0011
     SbcCD_C  30 sgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatl 84 
                  ++lSGGe+       l aala ++++    ++  +l++LDE  + lD  s++++
  CTQ30507.1 454 LSALSGGER-------LKAALACVLWR----REPAQLLLLDEPTNHLDLASTQAI 497
                 6789*****.......999********....6789*************9988876 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.21   1.1e+02       6      22 ..      39      55 ..      36      80 .. 0.86
   2 ?   10.2   0.0   0.00084      0.45       3      22 ..     368     387 ..     366     399 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.21
      AAA_24  6 liyGpsgiGKTtlakel 22
                 ++G +g+GKT l++ l
  CTQ30507.1 39 GLVGRNGVGKTRLLRLL 55
                689*********99876 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00084
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                 ++i++ Gp+g GKTtl+k+l
  CTQ30507.1 368 MRIALKGPNGCGKTTLLKTL 387
                 799***************98 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.25   1.3e+02       4      21 ..      39      56 ..      36      72 .. 0.82
   2 ?   10.9   0.1   0.00047      0.25       4      23 ..     371     392 ..     368     406 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.25
                EEEESTTCCHHHHHHHHH CS
        cobW  4 vltGflGsGKTtLlnhll 21
                +l+G  G GKT Ll+ l 
  CTQ30507.1 39 GLVGRNGVGKTRLLRLLA 56
                689999********9765 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00047
                 EEEESTTCCHHHHHHHHH..CT CS
        cobW   4 vltGflGsGKTtLlnhll..en 23 
                  l G+ G GKTtLl++ll  e+
  CTQ30507.1 371 ALKGPNGCGKTTLLKTLLglEQ 392
                 689**************97632 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.018       9.4      11      38 ..      27      54 ..      18      57 .. 0.85
   2 ?   -1.6   0.2       6.2   3.3e+03     121     121 ..     274     274 ..     199     327 .. 0.46
   3 ?   10.6   0.6    0.0011      0.59      26      37 ..     374     385 ..     370     389 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.018
      AAA_23 11 rdqeidFskgltlItGpNGaGKTTildA 38
                +  ++ +++ l  ++G NG GKT +l+ 
  CTQ30507.1 27 GPLSVSLEPSLCGLVGRNGVGKTRLLRL 54
                5567788999999**********99875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 6.2
      AAA_23 121 i 121
                 +
  CTQ30507.1 274 L 274
                 1 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.0011
      AAA_23  26 GpNGaGKTTild 37 
                 GpNG+GKTT+l 
  CTQ30507.1 374 GPNGCGKTTLLK 385
                 **********96 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.8   9.2e+02       6      23 ..      39      56 ..      35      67 .. 0.85
   2 ?   11.1   0.0   0.00059      0.31       5      24 ..     370     389 ..     367     425 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.8
      AAA_14  6 vitGaRrvGKTtllkqli 23
                 ++G   vGKT ll+ l+
  CTQ30507.1 39 GLVGRNGVGKTRLLRLLA 56
                5789999******99876 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00059
      AAA_14   5 lvitGaRrvGKTtllkqlik 24 
                 ++++G+  +GKTtllk+l+ 
  CTQ30507.1 370 IALKGPNGCGKTTLLKTLLG 389
                 689*************9974 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.28   1.5e+02      21      40 ..      37      56 ..      14      61 .. 0.79
   2 ?    9.1   0.1    0.0023       1.2      21      40 ..     369     388 ..     351     399 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.28
                EEEEEESTTSSHHHHHHHHH CS
        TsaE 21 vilLeGdLGaGKTtlvrgla 40
                +  L G  G+GKT l r la
  CTQ30507.1 37 LCGLVGRNGVGKTRLLRLLA 56
                4679999********99875 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0023
                 EEEEEESTTSSHHHHHHHHH CS
        TsaE  21 vilLeGdLGaGKTtlvrgla 40 
                  i+L+G+ G+GKTtl + l+
  CTQ30507.1 369 RIALKGPNGCGKTTLLKTLL 388
                 499*************9986 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0       0.2   1.1e+02       3      19 ..      40      56 ..      38      62 .. 0.89
   2 ?    8.9   0.0    0.0035       1.9       2      18 ..     371     387 ..     370     404 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.2
  RNA_helicase  3 lyGpsgeGKStlakeLa 19
                  l+G++g+GK++l + La
    CTQ30507.1 40 LVGRNGVGKTRLLRLLA 56
                  78**********98875 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0035
  RNA_helicase   2 wlyGpsgeGKStlakeL 18 
                    l Gp+g+GK+tl k+L
    CTQ30507.1 371 ALKGPNGCGKTTLLKTL 387
                   689***********996 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.14        72       4      25 ..      39      60 ..      36      66 .. 0.86
   2 ?    8.4   0.0    0.0028       1.5       2      26 ..     369     393 ..     368     419 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.14
                EEEESTTSSHHHHHHHHHTTSE CS
      FeoB_N  4 alvGnpnvGkttlfnaltgakq 25
                 lvG   vGkt l+  l+g ++
  CTQ30507.1 39 GLVGRNGVGKTRLLRLLAGLDS 60
                69***************99875 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0028
                 EEEEEESTTSSHHHHHHHHHTTSEE CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqk 26 
                 ++al G   +Gkttl+ +l g +q 
  CTQ30507.1 369 RIALKGPNGCGKTTLLKTLLGLEQA 393
                 799******************9986 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.36   1.9e+02       4      22 ..      40      58 ..      38     108 .. 0.80
   2 ?    1.2   1.0      0.72   3.8e+02      29      59 ..     229     259 ..     180     324 .. 0.64
   3 ?   11.4   0.0   0.00053      0.28       1      19 [.     369     387 ..     369     427 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.36
      AAA_28  4 itGgestGKTtlleaLaar 22
                ++G  + GKT ll+ La  
  CTQ30507.1 40 LVGRNGVGKTRLLRLLAGL 58
                578899**********954 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.72
      AAA_28  29 Eaareileeklakgedalpwv.edllafaerv 59 
                 E+ r+ + e++a +   l+++  d+ + ++r+
  CTQ30507.1 229 EYQRQRMAEQQAARAA-LEHAvTDRRRTRARM 259
                 5555555555544443.333323333333322 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00053
      AAA_28   1 kivitGgestGKTtlleaL 19 
                 +i++ G+ ++GKTtll+ L
  CTQ30507.1 369 RIALKGPNGCGKTTLLKTL 387
                 799*************998 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.41   2.2e+02      27      39 ..      42      54 ..      35      59 .. 0.87
   2 ?    8.7   0.0    0.0029       1.5      27      41 ..     374     388 ..     366     403 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.41
    ATPase_2 27 GpegsGKtaLlke 39
                G+ g+GKt+Ll+ 
  CTQ30507.1 42 GRNGVGKTRLLRL 54
                99*********85 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0029
    ATPase_2  27 GpegsGKtaLlkeii 41 
                 Gp g+GKt+Llk ++
  CTQ30507.1 374 GPNGCGKTTLLKTLL 388
                 9***********876 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.13        69       3      19 ..      39      55 ..      37      63 .. 0.85
   2 ?    7.1   0.0    0.0089       4.7       3      22 ..     371     390 ..     369     404 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.13
        MobB  3 givgksgsGKTtLlekl 19
                g+vg++g GKT Ll  l
  CTQ30507.1 39 GLVGRNGVGKTRLLRLL 55
                79***********9755 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0089
        MobB   3 givgksgsGKTtLleklipe 22 
                 ++ g +g+GKTtLl+ l+  
  CTQ30507.1 371 ALKGPNGCGKTTLLKTLLGL 390
                 677999**********9864 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.071        37       4      18 ..      40      54 ..      38      62 .. 0.88
   2 ?    5.2   0.0     0.046        24       2      22 ..     370     390 ..     369     423 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.071
                EESSTTSSHHHHHHC CS
         Roc  4 lvGdsgvGKtsllkr 18
                lvG +gvGKt ll+ 
  CTQ30507.1 40 LVGRNGVGKTRLLRL 54
                89**********975 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.046
                 EEEESSTTSSHHHHHHCHCT- CS
         Roc   2 vvlvGdsgvGKtsllkrfved 22 
                 + l G +g GKt+llk ++  
  CTQ30507.1 370 IALKGPNGCGKTTLLKTLLGL 390
                 7788************99754 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   9.3    0.0003      0.16       2      61 ..     214     272 ..     213     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.0003
  ABC_tran_Xtn   2 elengklteYkGnYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaq 61 
                   el+   l++Y GnY+ey +++ ++++++++a e     ++++++ +++    a++ + aq
    CTQ30507.1 214 ELTPTALRSYGGNYDEYQRQRMAEQQAARAALEHAVTDRRRTRARMQKEHD-AAQRRSAQ 272
                   7777889*********************************99999998776.44444444 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.42   2.2e+02       6      23 ..      40      57 ..      38      60 .. 0.88
   2 ?    8.3   0.2    0.0034       1.8       3      24 ..     369     390 ..     368     396 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.42
   PduV-EutP  6 liGkvgsGKttLtqalkg 23
                l+G+ g+GKt L + l g
  CTQ30507.1 40 LVGRNGVGKTRLLRLLAG 57
                79**********998876 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0034
   PduV-EutP   3 killiGkvgsGKttLtqalkge 24 
                 +i l G+ g+GKttL ++l g 
  CTQ30507.1 369 RIALKGPNGCGKTTLLKTLLGL 390
                 68899************99775 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   2.1     0.015         8     101     183 ..     237     325 ..     201     341 .. 0.50
   2 ?    3.1   0.0      0.13        67      20      38 ..     370     388 ..     354     413 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.015
      AAA_11 101 seavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeek........eklkkskekskskleqerrklkkerkelskelee 183
                 ++++ +  le+ v +r++   +a+++ke ++++++ a++lr  +  +           + k+     +++++++++ l++++++ ++++ee
  CTQ30507.1 237 EQQAARAALEHAVTDRRRT--RARMQKEHDAAQRRSAQTLRTVDTLNIAsfervkykGAAKERPGALRRQHREQNSSLNAAVQQARERVEE 325
                 3333333344444444433..2444444444444444444443333332322222224444444444445555555555555555544444 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.13
      AAA_11  20 tliqGPPGtgKTktivell 38 
                   ++GP G+gKT+ +  ll
  CTQ30507.1 370 IALKGPNGCGKTTLLKTLL 388
                 5689********5554443 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.23   1.2e+02      34      53 ..      36      55 ..      11     105 .. 0.89
   2 ?   -1.4   0.9       2.7   1.4e+03     107     143 ..     278     328 ..     234     331 .. 0.52
   3 ?   10.6   0.0    0.0006      0.32      15      50 ..     353     384 ..     342     395 .. 0.84
   4 ?   -1.2   0.0       2.4   1.3e+03      89     146 ..     462     510 ..     423     511 .. 0.50

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.23
      AAA_25 34 elallaGapgtGKttlaldl 53
                +l+ l+G+ g+GKt l+  l
  CTQ30507.1 36 SLCGLVGRNGVGKTRLLRLL 55
                677799********998655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.7
      AAA_25 107 d.............lagv.eslpLfakdrggtl.ltadvdaleaaieevegv 143
                 d             +a +  +  L+ + r+++  l+a+v++ ++++ee e +
  CTQ30507.1 278 DtlniasfervkykGAAKeRPGALRRQHREQNSsLNAAVQQARERVEE-ETP 328
                 233333344444442223244445544444444588888888888888.655 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.0006
      AAA_25  15 laapppprrwlvkgllpagelallaGapgtGKttla 50 
                 + ap +p++w ++g +     ++l G+ g+GKttl+
  CTQ30507.1 353 DHAPAAPLNWRIDGPM----RIALKGPNGCGKTTLL 384
                 456999********98....5*************97 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 2.4
      AAA_25  89 Rlravgeal...rddarllvldlagveslpLfakdrggtlltadvdaleaaieevegvrlv 146
                 Rl+a+++ +   r++a+ll+ld ++   l+          l a ++a+e a+ + +g+ lv
  CTQ30507.1 462 RLKAALACVlwrREPAQLLLLDEPTN-HLD----------L-ASTQAIESALAAFPGAMLV 510
                 33333322233344444444443332.222..........2.3345566666666666655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.12        63       4      20 ..      40      56 ..      37     112 .. 0.81
   2 ?   -2.3   2.9       8.4   4.4e+03      90     134 ..     234     278 ..     224     288 .. 0.66
   3 ?   11.0   0.0   0.00066      0.35       4      32 ..     372     404 ..     370     452 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.12
      AAA_33  4 lvGlpGsGKstlaerll 20
                lvG +G+GK+ l++ l+
  CTQ30507.1 40 LVGRNGVGKTRLLRLLA 56
                79**********99876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 8.4
      AAA_33  90 klarrlgvpvrivvvetdeetlkeRlakRaangddrsevpeeald 134
                 ++a+++ ++ ++ +  td++  ++R +k  ++ ++rs  +++++d
  CTQ30507.1 234 RMAEQQAARAALEHAVTDRRRTRARMQKEHDAAQRRSAQTLRTVD 278
                 455666666666666677777777777766666666666666665 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00066
      AAA_33   4 lvGlpGsGKstlaerllkklg....avllssdt 32 
                 l G++G+GK+tl++ ll  ++     v+ls  +
  CTQ30507.1 372 LKGPNGCGKTTLLKTLLGLEQaasgDVRLSVSA 404
                 67*************964443446677777665 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.068        36      23      43 ..      42      62 ..      40      84 .. 0.74
   2 ?    0.1   1.5      0.46   2.4e+02     390     464 ..     236     281 ..     216     332 .. 0.45
   3 ?    3.0   0.0     0.059        31      23      42 ..     374     393 ..     372     412 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.068
      AAA_13 23 GwNGaGKTtLSrllrslelge 43
                G+NG GKT L rll+ l + +
  CTQ30507.1 42 GRNGVGKTRLLRLLAGLDSPA 62
                9**************996544 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.46
      AAA_13 390 eekeeakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeein 464
                 +e+++a+ +le+                             ++++  +  + +++e  + +++  +  ++++ +n
  CTQ30507.1 236 AEQQAARAALEH-----------------------------AVTDRRRTRARMQKEHDAAQRRSAQTLRTVDTLN 281
                 233333333333.............................3333333333333333333333333333333332 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.059
      AAA_13  23 GwNGaGKTtLSrllrslelg 42 
                 G NG GKTtL + l  le+ 
  CTQ30507.1 374 GPNGCGKTTLLKTLLGLEQA 393
                 89********9999888754 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.23   1.2e+02       3      20 ..      40      57 ..      39      75 .. 0.81
   2 ?    9.2   0.0    0.0032       1.7       1      18 [.     370     387 ..     370     431 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.23
      AAA_18  3 ltGtpGvGKttlakeLsk 20
                l G  GvGKt l + L+ 
  CTQ30507.1 40 LVGRNGVGKTRLLRLLAG 57
                77889*********9964 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0032
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 I+l G+ G+GKttl k L
  CTQ30507.1 370 IALKGPNGCGKTTLLKTL 387
                 8999***********999 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0       0.1        54       5      22 ..      39      56 ..      35      66 .. 0.83
   2 ?   -1.2   0.7       2.6   1.4e+03      29      82 ..     269     322 ..     255     327 .. 0.78
   3 ?    6.0   0.0     0.016       8.2       3      22 ..     369     388 ..     367     410 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.1
                EEEESTTSSHHHHHHHHH CS
       SRP54  5 llvGlqGaGKTttlaKLa 22
                 lvG +G+GKT  l  La
  CTQ30507.1 39 GLVGRNGVGKTRLLRLLA 56
                59*********9887766 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.6
                 TS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHHHHHHHHT CS
       SRP54  29 gkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakeavekakee 82 
                      l ++Dt  +a +e +k  +   + p   +++++++ + +++av++a+e+
  CTQ30507.1 269 RSAQTLRTVDTLNIASFERVKYKGAAKERPGALRRQHREQNSSLNAAVQQARER 322
                 555678899************999998888777777777888888888888775 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.016
                 EEEEEESTTSSHHHHHHHHH CS
       SRP54   3 villvGlqGaGKTttlaKLa 22 
                  i+l G++G GKTt l  L 
  CTQ30507.1 369 RIALKGPNGCGKTTLLKTLL 388
                 68899*********998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1196  (0.0667076); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 3654.34
//
Query:       CTQ30508.1  [L=70]
Description: Small toxic polypeptide [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-21   75.6   3.5    1.7e-21   75.3   3.5    1.1  1  HOK_GEF   Hok/gef family


Domain annotation for each model (and alignments):
>> HOK_GEF  Hok/gef family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   3.5   9.7e-26   1.7e-21       1      42 []      25      66 ..      25      66 .. 0.99

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 9.7e-26
     HOK_GEF  1 yalvaliviCiTvLlftllvrkdLCElrirsGntEvaAflac 42
                y+l++l+viC+T+Ll+t++vr++LCEl+ r+Gn+E++Aflac
  CTQ30508.1 25 YLLFGLVVICFTILLLTWMVRDSLCELQRRQGNIELVAFLAC 66
                89**************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 534.66
//
Query:       CTQ30509.1  [L=689]
Description: glycine tRNA synthetase, beta subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.2e-215  717.5   0.0   1.7e-215  717.0   0.0    1.2  1  tRNA_synt_2f  Glycyl-tRNA synthetase beta subunit
    9.1e-08   32.3   1.3    2.4e-07   30.9   1.3    1.7  1  DALR_1        DALR anticodon binding domain


Domain annotation for each model (and alignments):
>> tRNA_synt_2f  Glycyl-tRNA synthetase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  717.0   0.0  1.9e-219  1.7e-215       1     534 []       6     551 ..       6     551 .. 0.98

  Alignments for each domain:
  == domain 1  score: 717.0 bits;  conditional E-value: 1.9e-219
  tRNA_synt_2f   1 lLlEigtEElPakalkkaleqlkkllekalkearlsyeevevfatpRRLallveglaekqadkeeekkgppvkvafdadgkptkaaegflrkqgvev 97 
                   +L+EigtEElP+kal++++e+++++++++l++a+l++++ve+fa+pRRLal v +la++qad+e+ek+gp++++afda+gkp+kaaeg++r++g++v
    CTQ30509.1   6 FLVEIGTEELPPKALRSLAESFAANVTAELDNAGLAHGKVEWFAAPRRLALKVANLAAAQADREVEKRGPAIAQAFDAEGKPSKAAEGWARGCGITV 102
                   8************************************************************************************************ PP

  tRNA_synt_2f  98 eeleveekkkgeylfakkekkgretaelLaelleelikklpfpksMrWgsselrFvRPvrwlvallgeevvpveiaglksgrttrghrfla.eevei 193
                   +++e+ +++kge+l+++ ++kg++t++lL++++ + ++klp+pk MrWg+s+++FvRPv+++++llg++v+p++i+g+ s+r+ rghrf++  e++i
    CTQ30509.1 103 DQAERLTTDKGEWLLYRAHVKGESTEALLPNMIASSLAKLPIPKLMRWGASDVHFVRPVHTVTLLLGDKVIPATILGIPSDRVIRGHRFMGePEFTI 199
                   ********99********************************************************************************8799*** PP

  tRNA_synt_2f 194 ksaddYaekleea.kVivdaeeRkekIleqlealakeagleveedeeLleevtaLvEwPvvllGsfdeefLelPeevlittmkehqkyfpvrdkegk 289
                   ++ad+Y + l e+ kVi+d+e+Rk+kI+++++++a++ g++++++e+Lleevt+LvEwPvvl+++f+e+fL++P+e+l+ tmk +qkyfpv+d++gk
    CTQ30509.1 200 DHADQYPQILLERgKVIADYEQRKAKIKADAQEAARKIGGQADLSESLLEEVTSLVEWPVVLTAKFEEKFLAVPSEALVYTMKGDQKYFPVYDNAGK 296
                   *********99999**********************99*********************************************************** PP

  tRNA_synt_2f 290 LlpkFivvsnieskdeeaviaGnerVlraRLsDAkFFyeeDlkkplesrvekLkkvvFhekLGslldkverieklaeelaeek....leeaeraaeL 382
                   Llp+Fi+v+nieskd++++i+Gne+V+r+RL+DA+FF+++D+kk+le+ +++L++v+F+++LG+l dk++ri++la ++ae +    +++a+ra  L
    CTQ30509.1 297 LLPNFIFVANIESKDPQQIISGNEKVVRPRLADAEFFFNTDRKKRLEDNLPRLETVLFQQQLGTLRDKTDRIQALAGWIAE-QigadVNHATRAGLL 392
                   ********************************************************************************5.622234699****** PP

  tRNA_synt_2f 383 aKaDLvtemVgeFpeLqGimGryYakadgekeeVaeAieehylprgagdelPetkvgavvaladkldtlvglfaigekptGskDPfaLRRaalgvir 479
                   +K+DL+t+mV eF++ qG+mG++Ya++dge+e+Va A++e+y+pr+agd+lP+++v+++va+adk+dtl+g+f+ig++p+G+kDPfaLRRaalgv+r
    CTQ30509.1 393 SKCDLMTNMVFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDALPSNPVACAVAIADKMDTLAGIFGIGQHPKGDKDPFALRRAALGVLR 489
                   ************************************************************************************************* PP

  tRNA_synt_2f 480 illekklrldlkellekalealk.......vleelleFfaeRlkvllreegiradlvdavla 534
                   i++ek+l+ldl++l e+a++ +        v++++++F++ R+++++++eg+ +d+++avla
    CTQ30509.1 490 IIVEKNLDLDLQTLTEEAVRLYGekltnanVVDDVIDFMLGRFRAWYQDEGYGVDTIQAVLA 551
                   *******************9998999999999****************************96 PP

>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   1.3   2.7e-11   2.4e-07       4     104 ..     582     679 ..     579     685 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.7e-11
                 HHHHHHHHHHHTTCTTCCCCHCCHCCS-SHHHHHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHCTSTTSCTHHH.HHHHHHHHHHHH CS
      DALR_1   4 ahaRiksilrkaeeegekleeealalleeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeelaaaRLaLvkavrq 102
                 a  R+++il k++e  ++   +a+ l +e +e++L+ +l  + + l+  + + ++++ +  l  L + + +f++++ v+ e+++++  +RL L++ +r+
  CTQ30509.1 582 ANKRVSNILAKSDETLNDIV-HASVL-KEAAEIKLAGNLVVLRDKLQPYFAAGRYQDALIELAALREPVDEFFENVMVNAEDKDVR-INRLTLLSKLRE 677
                 779**********9996654.44455.799******************************************************99.********9998 PP

                 HH CS
      DALR_1 103 vL 104
                  +
  CTQ30509.1 678 LF 679
                 76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 5230.83
//
Query:       CTQ30510.1  [L=303]
Description: glycyl-tRNA synthetase, alpha chain [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.3e-150  498.9   0.0   3.8e-150  498.7   0.0    1.0  1  tRNA-synt_2e  Glycyl-tRNA synthetase alpha subunit


Domain annotation for each model (and alignments):
>> tRNA-synt_2e  Glycyl-tRNA synthetase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  498.7   0.0  2.1e-154  3.8e-150       1     277 [.       9     291 ..       9     292 .. 0.98

  Alignments for each domain:
  == domain 1  score: 498.7 bits;  conditional E-value: 2.1e-154
                   HHHHHHHHHHHHHCTT-EE----SS--SSGGGSHHHHTCCCSSS-EEEEEEEEEE-GGG--TT-STT--SEEEEEEEEEES--TTHHHHHHHHHHHC CS
  tRNA-synt_2e   1 fqelilklqkfwaeqgcvilqpydlevGagtlhpatflralgpepwkvayvepsrRptDgrygenpnrlqkyyqfqvilkPspeniqelylesleal 97 
                   fq lil+lq++wa+qgc+i+qp+d+evGagt hp+t+lralgpep+++ayv+psrRptDgrygenpnrlq+yyqfqv++kPsp+niqelyl sl++l
    CTQ30510.1   9 FQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPMATAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSLKEL 105
                   89*********************************************************************************************** PP

                   T--CCCS-EEEEEEEEEEGGGTEEEEEEEEEETTCEEEEEEEEEEETTEE-SS--EEEEEEHHHHHHHHCT-SSGGG-ECCT....TEEHHHHHHHH CS
  tRNA-synt_2e  98 gidlkehdirfveDdWesptlGawGlGwevwldGmeitqftYfqqvgglelkpvsveityGleRlamylqevdnvydlewne....kvtygdvflqn 190
                   g+d++ hdirfveD+We+ptlGawGlGwevwl+Gme+tqftYfqqvggle+kpv++eityGleRlamy+q+vd+vydl+w++    k+tygdvf+qn
    CTQ30510.1 106 GMDPTIHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGLERLAMYIQGVDSVYDLVWSDgplgKTTYGDVFHQN 202
                   *********************************************************************************988888********** PP

                   HHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHH..CCT-HHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  tRNA-synt_2e 191 eveqsaynfeeadvelllklfeeyekeakrll..ekklvlpaydlvlkashtfnlldargaisvterakyiarvrklakkvaeayleqr 277
                   eveqs+ynfe+adv++l+++fe+yekea++ll  e+ l+lpay+ +lka+h fnlldar+aisvter++yi r+r+l+k+vaeay+++r
    CTQ30510.1 203 EVEQSTYNFEYADVDFLFTCFEQYEKEAQQLLalETPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRIRTLTKAVAEAYYASR 291
                   ******************************9755888************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2563.05
//
Query:       CTQ30511.1  [L=100]
Description: hypothetical protein CH1034_360024 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-45  151.4   1.7    7.1e-45  151.2   1.7    1.0  1  YsaB      YsaB-like lipoprotein


Domain annotation for each model (and alignments):
>> YsaB  YsaB-like lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2   1.7   3.9e-49   7.1e-45       1      75 []      26     100 .]      26     100 .] 1.00

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 3.9e-49
        YsaB   1 qkaqkarvapersldmeqlCkdkaairyntdaqkidvngfeqfqgsyelsGrtareesfvCsfdaeGqflhLsmr 75 
                 qkaq+ar++p+++l+m+qlCkd+aairynt++q +dvn+feqfq+syelsGrt ++e+f+Csfd++Gqf+hLsmr
  CTQ30511.1  26 QKAQRARITPQTTLNMAQLCKDQAAIRYNTQTQLVDVNHFEQFQASYELSGRTGKNERFICSFDPDGQFMHLSMR 100
                 9*************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 779.84
//
Query:       CTQ30512.1  [L=331]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-26   92.0  37.4    4.6e-26   91.7  37.4    1.0  1  Acyl_transf_3  Acyltransferase family
  ------ inclusion threshold ------
       0.16   12.1   7.3       0.36   11.0   5.6    2.5  2  DUF1600        Protein of unknown function (DUF1600)


Domain annotation for each model (and alignments):
>> Acyl_transf_3  Acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7  37.4   5.1e-30   4.6e-26       1     338 [.       5     317 ..       5     321 .. 0.84

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 5.1e-30
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3   1 laylDllRgiAillVvflHaliayspdagrgspiqasqssqiaflggfgvplFFllSGfflaamlyrrrglsklikrRilrlliplliwllliill 96 
                    ++++  lRgiA+++Vv++H+   y + ++   + q+ +   ++  +++ vplFF++SG+++        g +++  r + r+ +++ +++ l +l 
     CTQ30512.1   5 IHWITNLRGIACMMVVMIHSTSWYITHPHAITLLQWDIANLLNSASRVSVPLFFMISGYLF-------FGERSAQPRHFWRIGLCIAFYSALSLLY 93 
                    69**************************9999999998888899*****************.......699999********************** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3  97 ialvaghiqanasanvtlfdetkglmfllfefpatghlWfLwalfvlylllpll.lrllrkvrkshlllllilllllslvfirhelfgpatsvgll 191
                    i l+ + ++  +  n+++              p+++hlWf +a+ v+yll+pll ++ +       l+++l++l+    v+  +++ ++ ++ ++ 
     CTQ30512.1  94 ITLFTHINVELSLKNLLQK-------------PVFYHLWFFFAITVIYLLSPLLqVKSTSSTMLLALMAILGILANPNMVSVKAAGIEWLPVNLYI 176
                    ***9999999888888888.............**********************545555555555555555555555555555544444443333 PP

                    xxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 192 plpsvla...llfflfGalladaddrdrnlsrglkislllsllllalillalfgqtdggglvasvliqsaslllvslgimllllllfalpsrsafk 284
                              +++ l G+l +     d+ + + + ++++l+++++++i  + +    + g++  +++ ++  +++++++ ll l+ ++l+ r    
     CTQ30512.1 177 ------NgdtFYYVLYGVLGRAIGTLDTDKKWLTPLCAALFIAAVWVISRGTLHELRWRGDFGDTWYLYCGPAVFVCAVTLLTLAKNWLNARPLPG 266
                    ......144499****************99999999999999999999999999998899999999999999999999999999988888888777 PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Acyl_transf_3 285 llrylgkiSygiYliHlpllmllqkllrdwglnlgevlllvlllvvsvivsvvl 338
                     +  +++ S+giY +H +++++l+      +++  ++l +v ++ +++++s++l
     CTQ30512.1 267 -IACIARHSLGIYGFHALIVHALRASHLELSRW--PLLDIVWIFSAALLGSLLL 317
                    .********************************..7777777777777777776 PP

>> DUF1600  Protein of unknown function (DUF1600)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   5.6   4.1e-05      0.36      11      97 ..      54     131 ..      41     142 .. 0.79
   2 ?   -3.0   0.0      0.93   8.3e+03      46      58 ..     206     218 ..     200     222 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.1e-05
     DUF1600  11 nPilFlvlgfllfkttkkrkiknlfktllkviiYpliyliYlitipfvktedgttysVYgevtnikdnlaiailvlielllvifpls 97 
                  P+ F++ g+l f  +++ ++++++   l ++ Y ++ l+Y+     +         V   + n+ +++ +  l +++ + vi++ls
  CTQ30512.1  54 VPLFFMISGYL-FFGERSAQPRHFWRIGLCIAFYSALSLLYITLFTHI--------NVELSLKNLLQKPVFYHLWFFFAITVIYLLS 131
                 68899999999.8889999**********************9988888........5556677777777776666666666666665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.93
     DUF1600  46 liyliYlitipfv 58 
                 l  +++++ ++ +
  CTQ30512.1 206 LCAALFIAAVWVI 218
                 4445555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       844  (0.0470746); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2440.61
//
Query:       CTQ30513.1  [L=147]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.6e-41  138.3  12.1    3.5e-21   75.2   1.2    2.1  2  YiaAB          yiaA/B two helix domain
  ------ inclusion threshold ------
      0.015   14.3   1.5      0.019   14.0   1.5    1.1  1  AbrB           Transition state regulatory protein AbrB
       0.04   13.8   1.3       0.33   10.9   0.1    2.0  2  Wzy_C_2        Virulence factor membrane-bound polymerase, C-
      0.041   13.5   1.5      0.044   13.5   0.8    1.4  1  DUF4956        Domain of unknown function (DUF4956)
       0.17   12.4  10.3       0.34   11.4   0.3    2.5  2  DUF1218        Protein of unknown function (DUF1218)
       0.75    9.8  10.0        5.9    6.9  10.4    2.2  1  Colicin_V      Colicin V production protein
       0.98    9.4   9.9       0.21   11.6   4.9    1.9  2  MARVEL         Membrane-associating domain
        1.1    9.6  13.0        5.3    7.4   0.9    2.3  2  DUF308         Short repeat of unknown function (DUF308)
        2.7    8.3   8.7        1.8    8.9   2.7    2.3  2  DUF3040        Protein of unknown function (DUF3040)
          4    8.0   9.4        6.1    7.4   0.0    3.0  3  DUF202         Domain of unknown function (DUF202)
        6.4    6.5  12.2        9.2    6.0   8.3    1.9  2  FA_desaturase  Fatty acid desaturase


Domain annotation for each model (and alignments):
>> YiaAB  yiaA/B two helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   1.2   2.1e-24   3.5e-21       1      53 []      12      64 ..      12      64 .. 0.97
   2 !   68.6   3.8   2.5e-22   4.1e-19       1      53 []      75     127 ..      75     127 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 2.1e-24
       YiaAB  1 figqswlsfllalvlllvGlwylpldlseKgfyamgllfllfsaftlqKtvRD 53
                f ++sw++++ ++v +lvGlw+ +++l+eKg+y+++l+++lf+a ++qKtvRD
  CTQ30513.1 12 FHLISWIALIGGIVTYLVGLWNADMQLNEKGYYFAVLVLGLFAAASYQKTVRD 64
                6789*****************88*****************************9 PP

  == domain 2  score: 68.6 bits;  conditional E-value: 2.5e-22
       YiaAB   1 figqswlsfllalvlllvGlwylpldlseKgfyamgllfllfsaftlqKtvRD 53 
                 +++ + ++f++a++ll++Glw+ +l lseKgfy+++++++lf+a+++qK+vRD
  CTQ30513.1  75 YYTTCLVVFVIAVGLLVIGLWNATLLLSEKGFYGLAYFLSLFGAVAVQKNVRD 127
                 7999*****************88*****************************9 PP

>> AbrB  Transition state regulatory protein AbrB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.5   1.1e-05     0.019       4      76 ..      22      92 ..      19     110 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
        AbrB  4 GpllaaivlalaagaplrlprrlrkagqavlGvliGssftpevlaqiaeewllllllvvltlllsllvgllla 76
                G++ ++ +++l+ +a+++l+++   ++++vlG+  ++s +  v +++ + + + l  + +++++ ++vgll+ 
  CTQ30513.1 22 GGI-VTYLVGLW-NADMQLNEKGYYFAVLVLGLFAAASYQKTVRDKYEAIPTTALYYTTCLVVFVIAVGLLVI 92
                444.44566666.889******************************999999999999999999999998865 PP

>> Wzy_C_2  Virulence factor membrane-bound polymerase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.091   1.5e+02      24      75 ..      11      62 ..       7      72 .. 0.61
   2 ?   10.9   0.1    0.0002      0.33      20      85 ..      74     138 ..      74     146 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.091
     Wzy_C_2 24 pfllaaflvl.glldsksrsrrlrlrpklvlrvvalvlallglalllsilhdy 75
                +f+l+ +++l g + + +    +++ ++l  ++  +++++lgl++ +s   + 
  CTQ30513.1 11 AFHLISWIALiGGIVT-YLVGLWNADMQLNEKGYYFAVLVLGLFAAASYQKTV 62
                5889999988877777.555555555555555555555555555555554443 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0002
     Wzy_C_2  20 lwYspfllaaflvlglldsksrsrrlrlrpklvlrvvalvlallglalllsilhdyqrleqlylts 85 
                 l+Y+  l+++++++gll   + ++   l ++  ++++a  l l+g++++  +++d +  ++l+ + 
  CTQ30513.1  74 LYYTTCLVVFVIAVGLLVI-GLWNATLLLSEKGFYGLAYFLSLFGAVAVQKNVRDVWDPTRLREPL 138
                 8*****************9.9**********************************99888777665 PP

>> DUF4956  Domain of unknown function (DUF4956)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.8   2.7e-05     0.044      65     108 ..      34      84 ..      23     104 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.7e-05
     DUF4956  65 eeisvrevtYlFvaialglinglaslsl..........vellvlnvlivlvlal 108
                 + ++ +e  Y+F++++lgl ++++ +++          +   +l  +++lv+++
  CTQ30513.1  34 ADMQLNEKGYYFAVLVLGLFAAASYQKTvrdkyeaiptT---ALYYTTCLVVFV 84 
                 679999****************54444445666664432...333333333333 PP

>> DUF1218  Protein of unknown function (DUF1218)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00021      0.34      36      83 ..      10      57 ..       2      63 .. 0.87
   2 ?    4.5   4.1      0.03        50      38      59 ..      75      96 ..      60     119 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
     DUF1218 36 vvlfvlswivfaiAvalllvGaavnaehtkenvesCyvlkkgvFaaaa 83
                 ++ ++swi+++ +++++lvG +  +++ +e+ +  +vl  g+Faaa+
  CTQ30513.1 10 PAFHLISWIALIGGIVTYLVGLWNADMQLNEKGYYFAVLVLGLFAAAS 57
                57899****************999998888888888999999999997 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.03
     DUF1218 38 lfvlswivfaiAvalllvGaav 59
                  +++++vf+iAv ll++G + 
  CTQ30513.1 75 YYTTCLVVFVIAVGLLVIGLWN 96
                567899*************754 PP

>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  10.4    0.0036       5.9      26      81 ..      43      99 ..      14     120 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0036
   Colicin_V 26 lsllgwvvafvvasllypslaellaelilspalaaiiaf.lllfllvllivsllgal 81
                 +++ +v+++++a+ +++++ ++++ + +++ ++      +++ ++ l+i+ + + l
  CTQ30513.1 43 YYFAVLVLGLFAAASYQKTVRDKYEAIPTTALYYTTCLVvFVIAVGLLVIGLWNATL 99
                57899*********************6566666655555244444444444444444 PP

>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.35   5.6e+02      47      64 ..      11      28 ..       3      44 .. 0.61
   2 ?   11.6   4.9   0.00013      0.21      16     103 ..      45     127 ..      40     132 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.35
      MARVEL 47 fvavfsflyalfllvlyl 64
                ++  +s+++ ++++v yl
  CTQ30513.1 11 AFHLISWIALIGGIVTYL 28
                444455555555555554 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00013
      MARVEL  16 faiiilgliaslia..kldqllgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlvafialaaglrd 103
                 fa+++lgl a++ +  ++++++ +  +++ ++ ++  + f++a++llv+       + ++   l + ++++la +l l +++a+ + +rd
  CTQ30513.1  45 FAVLVLGLFAAASYqkTVRDKYEA-IPTTALYYTTCLVVFVIAVGLLVI------GLWNATLLLSEKGFYGLAYFLSLFGAVAVQKNVRD 127
                 9999****9999976444444444.445555566666677888888888......556889999******************99998887 PP

>> DUF308  Short repeat of unknown function (DUF308)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.9    0.0033       5.3      27      68 ..      14      55 ..       3      58 .. 0.75
   2 ?    7.0   5.2    0.0045       7.3      20      63 ..      77     119 ..      72     121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0033
      DUF308 27 lfGilllvsGivqiiaafaarkknrggrwlglllGilyliaG 68
                l+ +++l++Giv  + ++++ + +   + +++++ +l l a+
  CTQ30513.1 14 LISWIALIGGIVTYLVGLWNADMQLNEKGYYFAVLVLGLFAA 55
                78999******9999999888877777777776666655554 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0045
      DUF308  20 allalvllfGilllvsGivqiiaafaarkknrggrwlglllGil 63 
                 ++  +v+++++ llv G+++    ++ +++ + +++l+l +G++
  CTQ30513.1  77 TTCLVVFVIAVGLLVIGLWNATLLLSEKGFYGLAYFLSL-FGAV 119
                 677899***************999999999999887666.5554 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.6     0.067   1.1e+02      46      77 ..      14      54 ..       2      59 .. 0.68
   2 ?    8.9   2.7    0.0011       1.8      44      75 ..      75     106 ..      53     122 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.067
     DUF3040 46 vlavllfvaGllllvlGvaaaa.........vvlgvvGfvv 77
                ++++++++ G++  ++G+++a           ++ v+G+ +
  CTQ30513.1 14 LISWIALIGGIVTYLVGLWNADmqlnekgyyFAVLVLGLFA 54
                45556666699999999555554788888777777777655 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0011
     DUF3040  44 lavlavllfvaGllllvlGvaaaavvlgvvGf 75 
                 +++ ++++fv+++ llv+G+++a+++l+  Gf
  CTQ30513.1  75 YYTTCLVVFVIAVGLLVIGLWNATLLLSEKGF 106
                 45677888889********8888866665555 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0037       6.1      39      61 ..      11      33 ..       2      39 .. 0.81
   2 ?    2.6   3.7      0.12   1.9e+02      21      61 ..      48      96 ..      43     103 .. 0.52
   3 ?    0.8   3.6      0.43     7e+02      45      61 ..      80      96 ..      71     127 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0037
      DUF202 39 lgkilglilivlgiltllvglvr 61
                + +++++i+++ gi+t lvgl++
  CTQ30513.1 11 AFHLISWIALIGGIVTYLVGLWN 33
                447889***************98 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.12
      DUF202 21 ialglallrffl.......tgepsa.lgkilglilivlgiltllvglvr 61
                ++lgl+ +++ +       +  p++ l     l+ +v+++ +l++gl++
  CTQ30513.1 48 LVLGLFAAASYQktvrdkyEAIPTTaLYYTTCLVVFVIAVGLLVIGLWN 96
                4444444444333444333111111111223577888888888888886 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.43
      DUF202 45 lilivlgiltllvglvr 61
                l+ +v+++ +l++gl++
  CTQ30513.1 80 LVVFVIAVGLLVIGLWN 96
                44555555555555554 PP

>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   2.1     0.037        60     136     175 ..      13      53 ..       3      62 .. 0.70
   2 ?    6.0   8.3    0.0057       9.2      99     179 ..      48     121 ..      42     137 .. 0.58

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.037
  FA_desaturase 136 rllawlllllawlglwlalllllglall..lwlvplllllfl 175
                    +l+ w +l+  +++++l+ l+ + ++l+   +++++l+l+ +
     CTQ30513.1  13 HLISWIALIG-GIVTYLVGLWNADMQLNekGYYFAVLVLGLF 53 
                    5666666665.69999999999999999**555555555443 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0057
  FA_desaturase  99 lllgllvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglall...lwlvplllllfllalv 179
                    l+lgl++++           ++  r ++ +    +  ++++ l+++++++gl++  l+ + l+l+   +++++++l lf  + v
     CTQ30513.1  48 LVLGLFAAA---------SYQKTVRDKYEAIPTTA-LYYTTCLVVFVIAVGLLVIGLWNATLLLSekgFYGLAYFLSLFGAVAV 121
                    333333333.........44444444444333332.44444555555456666666666666666********99999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1087.86
//
Query:       CTQ30514.1  [L=123]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-19   69.7   9.4    3.5e-12   46.4   0.6    2.1  2  YiaAB           yiaA/B two helix domain
  ------ inclusion threshold ------
      0.015   15.0   0.3       0.03   14.0   0.1    1.7  2  PsaL            Photosystem I reaction centre subunit XI
       0.13   11.9   9.9        1.3    8.6   0.6    2.1  2  DUF998          Protein of unknown function (DUF998)
       0.23   11.1   6.3      0.097   12.3   0.8    2.0  2  Peptidase_M50B  Peptidase M50B-like


Domain annotation for each model (and alignments):
>> YiaAB  yiaA/B two helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   2.5   5.2e-10   2.3e-06       7      49 ..      10      52 ..       7      54 .. 0.92
   2 !   46.4   0.6   7.8e-16   3.5e-12       1      52 [.      63     114 ..      63     114 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 5.2e-10
       YiaAB  7 lsfllalvlllvGlwylpldlseKgfyamgllfllfsaftlqK 49
                 +++++ +++l+G+w  +   s Kg+++ +l++++f++ + q+
  CTQ30514.1 10 GMMAAGSLVYLLGIWRTCPLFSGKGYFLGVLVMGMFAVLAHQR 52
                6899***********99*********************99886 PP

  == domain 2  score: 46.4 bits;  conditional E-value: 7.8e-16
       YiaAB   1 figqswlsfllalvlllvGlwylpldlseKgfyamgllfllfsaftlqKtvR 52 
                 fi+++ l++ll+++lllvG wy p+d++eK+ y+++++++l++a ++ + +R
  CTQ30514.1  63 FIALCRLVLLLSVGLLLVGAWYVPADWHEKAVYIAAWFVCLYGASATPERTR 114
                 99******************************************99877665 PP

>> PsaL  Photosystem I reaction centre subunit XI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.4   6.2e+03      74      86 ..       9      21 ..       5      26 .. 0.69
   2 ?   14.0   0.1   6.7e-06      0.03      51     101 ..      37      88 ..      31     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.4
                HHHHHHHHHHHHH CS
        PsaL 74 agllaaiglvlil 86
                 g++aa +lv +l
  CTQ30514.1  9 RGMMAAGSLVYLL 21
                4777777777766 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 6.7e-06
                 HHHHCTHHHHHHSGGGGST.THHHHHHHHHHHHHHHHHHHHHHHHHHHTTS- CS
        PsaL  51 hGYflvGPfvklgplrdse.aanlagllaaiglvliltvclsiYgsvsfqkk 101
                  G +++G f++l+  r s+ + +  g++a + lvl+l+v+l + g+  ++++
  CTQ30514.1  37 LGVLVMGMFAVLAHQRASQwQEQDDGFIALCRLVLLLSVGLLLVGAWYVPAD 88 
                 466779*************788889****************99988766555 PP

>> DUF998  Protein of unknown function (DUF998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.1   0.00054       2.4      48      86 ..      11      49 ..       5      50 .. 0.86
   2 ?    8.6   0.6   0.00029       1.3      45      93 ..      62     113 ..      53     119 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00054
      DUF998 48 llgllvlalavgllraargragragrlllavaglglvla 86
                ++++++l++++g++r+ +  +g+   l + v+g+++vla
  CTQ30514.1 11 MMAAGSLVYLLGIWRTCPLFSGKGYFLGVLVMGMFAVLA 49
                5789999999******99999999999999999998875 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00029
      DUF998  45 glvllgllvlalavgllra...argragragrlllavaglglvlagvfptdp 93 
                 g+++l+ lvl+l+vgll +   +  + +   ++ +a++ ++l +a + p+ +
  CTQ30514.1  62 GFIALCRLVLLLSVGLLLVgawYVPADWHEKAVYIAAWFVCLYGASATPERT 113
                 7899999999999999999944444444456778888888888888888776 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.6     0.026   1.2e+02      73     134 ..      34      52 ..       1      67 [. 0.46
   2 ?   12.3   0.8   2.2e-05     0.097     117     157 ..      68     108 ..      61     122 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.026
  Peptidase_M50B  73 GYlgpallGlllillsasgkarlllvllvllllvllllvrnlfglvlllllgallllvllla 134
                     GY                                           +l +l+++++++++  +
      CTQ30514.1  34 GY-------------------------------------------FLGVLVMGMFAVLAHQR 52 
                     22...........................................33333333333333333 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.2e-05
  Peptidase_M50B 117 lvlllllgallllvlllaedelleflllflgvflllgsvrd 157
                     +++lll ++lll+ +++ + ++ e +++  ++f++l++   
      CTQ30514.1  68 RLVLLLSVGLLLVGAWYVPADWHEKAVYIAAWFVCLYGASA 108
                     45666666777777777778888999999*******98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 899.79
//
Query:       CTQ30515.1  [L=484]
Description: xylulokinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-81  273.4   0.0    2.2e-81  273.0   0.0    1.1  1  FGGY_N       FGGY family of carbohydrate kinases, N-terminal 
    1.7e-33  116.1   1.5    3.1e-33  115.2   1.5    1.5  1  FGGY_C       FGGY family of carbohydrate kinases, C-terminal 
     0.0011   18.5   0.1      0.016   14.7   0.0    2.1  2  BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.0   0.0   3.7e-85   2.2e-81       1     245 []       1     240 [.       1     240 [. 0.99

  Alignments for each domain:
  == domain 1  score: 273.0 bits;  conditional E-value: 3.7e-85
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTTEESSEEE-TT CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDkndkpLynailwk 99 
                 +++g+D+Gt+++kai+l+e+g+vvas++++l++s+p++ w+eqdpe++w a+  a++++++q+  s  ++ka+gi+gq++g++llDk  ++L++ailw+
  CTQ30515.1   1 MYIGIDLGTSGVKAILLNEQGEVVASHTEKLTVSRPHPLWSEQDPEQWWLATDTAMKALGAQH--SLRDVKALGIAGQMHGATLLDKSLQVLRPAILWN 97 
                 89*************************************************************..********************************** PP

                 --TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--EEEHHHHCTTTSEETTTTEE-HHHHHHTT- CS
      FGGY_N 100 drrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfvtdvtnasesmlfnikklewdeellailgi 198
                 d r+ae+++ l+   +  + +++tg+++++gft+ kl W++++e  vf +++k+ll++dyL+ r+tg+ ++d+++a+++ +++++ ++w++e+la++++
  CTQ30515.1  98 DGRCAEECQLLED--KVSASRQITGNLMMPGFTAPKLLWVQRHEAAVFSQVDKVLLPKDYLRLRMTGELASDMSDAAGTLWLDVARRDWSDEMLAACDL 194
                 ************9..78899******************************************************************************* PP

                 -GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 199 peelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 +++++P+l e+s ++g+l+pe+a+++  +++ +vvggggD++a+a+G
  CTQ30515.1 195 SRDAMPALFEGSDVTGQLRPEVAQAWN-MPQALVVGGGGDNAAGAVG 240
                 **************************8.67***************98 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   1.5   5.1e-37   3.1e-33       1     197 [.     249     435 ..     249     436 .. 0.90

  Alignments for each domain:
  == domain 1  score: 115.2 bits;  conditional E-value: 5.1e-37
      FGGY_C   1 akvslGTssflllvg....tkpvisehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpaf 95 
                 a++slGTs + ++v+    +kp  ++h++++ ++     + ++l+  +  a s ++w  +  gl       + v  ++a  aa  a+++ag v f+p++
  CTQ30515.1 249 AMLSLGTSGVYFAVSegflSKPESAVHSFCHALP-----GRWHLMSVMLSAASCLDWAAKLTGL-------ASVPALIA--AAQTADESAGPVWFLPYL 333
                 689**********664455666699999999999.....99********************888.......33434555..57799999********** PP

      FGGY_C  96 sglrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpkt.aeatalGaAil 193
                 sg+r+p+++p+a+g+++gl++++++a++arA+le+v ++l+++++  +++ g++++++ + GGg+++  ++q+lAdi g+ ++     + ++alGaA l
  CTQ30515.1 334 SGERTPHNNPQAKGVFFGLTHQHGPAELARAVLEGVGYALADGMDVVHAC-GIKPQSITLIGGGARSAYWRQMLADISGLQLDYRTGgDVGPALGAARL 431
                 **************************************************.****************************888655555*********** PP

      FGGY_C 194 Aava 197
                 A +a
  CTQ30515.1 432 AQLA 435
                 *887 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.7e-06     0.016       1      25 [.       3      27 ..       3     128 .. 0.91
   2 ?    1.8   0.0     0.023   1.4e+02     191     267 .]     362     432 ..     353     432 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.7e-06
                 EEEEE-SSEEEEEEEETTTEEEEEE CS
  BcrAD_BadFG  1 vGiDgGsTttkavlmdekgevlgrg 25
                 +GiD+G++ +ka+l++e+gev++  
   CTQ30515.1  3 IGIDLGTSGVKAILLNEQGEVVASH 27
                 7*******************99765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.023
                  HHHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH.....HHHH-S-EE--GGGGGHHHHHHHHHH CS
  BcrAD_BadFG 191 aedIlaglhraialrvialisrsggvtdevtltGGvakneaavkelrklvkenygevkininpdsiytgalGAalfA 267
                  a+++l+g+  a+a+  + +++  g  ++ +tl GG a+++   ++l      ++ + + +     ++ +alGAa +A
   CTQ30515.1 362 ARAVLEGVGYALADG-MDVVHACGIKPQSITLIGGGARSAYWRQML-----ADISGLQLDYRTGGDVGPALGAARLA 432
                  667777777777776.4567778888888**********5544444.....66777777788889999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3752.75
//
Query:       CTQ30516.1  [L=440]
Description: D-xylose isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-05   22.1   0.0     0.0071   15.8   0.0    2.2  2  AP_endonuc_2  Xylose isomerase-like TIM barrel


Domain annotation for each model (and alignments):
>> AP_endonuc_2  Xylose isomerase-like TIM barrel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0014        26      45     127 ..      60     137 ..      55     149 .. 0.63
   2 !   15.8   0.0   3.9e-07    0.0071      50     177 ..     145     284 ..     140     311 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0014
                   EEEEECCCHSTCTHCHTTCSHHHHHHHHHHHHHHHHHHTBSEEEEEBCCGBCTTTSGHHHHHHHHHHHHHHHHHHHHHHTSEE CS
  AP_endonuc_2  45 aslslftrfgypdederearreesvdalkraielaaaLGapllvlhpGtagagpkgseeeawerlaeslneladyaekegvkl 127
                   +++  f r++  + d +e +    ++++  a e+ ++L++p+  +h   + ++++ s +e  +++a+ ++ la++ ++ gvkl
    CTQ30516.1  60 FGVGSFDRPWQQPGDALEMA----KRKADVAFEFFHKLNVPYYCFHDV-DVSPEGASLKEYSNNFARMVEVLAEKQQQSGVKL 137
                   55566666666555544555....89999999999***********33.3344444444444444444444444444455665 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 3.9e-07
                   CCCHSTCTHCHTTCS.....HHHHHHHHHHHHHHHHHHTBSEEEEEBCC..GBCTTTSGHHHHHHHHHHHHHHHHHHHHHHT..SEEEEE--TTTTS CS
  AP_endonuc_2  50 ftrfgypdederear.....reesvdalkraielaaaLGapllvlhpGt..agagpkgseeeawerlaeslneladyaekeg..vklalEtlagsgv 137
                   ft++ y        +       ++  ++  a+ ++++LG+++ vl+ G+  +  + + + ++ +e++ + ++ ++++ +k g   +l++E+ + +++
    CTQ30516.1 145 FTNPRYGAGAAT--NpdpevFSWAATQVVTAMNATHQLGGENYVLWGGRegYETLLNTDLRQEREQIGRFMQLVVEHKHKIGfkGTLLIEPKPQEPT 239
                   444444433322..23355788899999******************998887788888888****************999996666**********9 PP

                   SSTC....HHHHHHHHHHTTTT.EEEEEEHHHHHHHTTTHHHHHH CS
  AP_endonuc_2 138 elgd....eelarlldavdspn.vgvclDtgHlliaeedvddalr 177
                      +    +++  +l++ + ++ +++++   H+ +a+  + ++++
    CTQ30516.1 240 KHQYdydaSTVYGFLKQFGLEKeIKLNIEANHATLAGHSFHHEIA 284
                   9998999999999******9999*****99999999777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3246.77
//
Query:       CTQ30517.1  [L=331]
Description: D-xylose transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-61  207.1  13.2      4e-61  206.8  13.2    1.1  1  Peripla_BP_4  Periplasmic binding protein domain
    1.8e-13   50.5   1.6    3.3e-13   49.7   1.6    1.4  1  Peripla_BP_1  Periplasmic binding proteins and sugar binding 
    4.3e-05   23.9   0.1    9.9e-05   22.7   0.1    1.5  2  Peripla_BP_3  Periplasmic binding protein-like domain


Domain annotation for each model (and alignments):
>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.8  13.2   6.7e-65     4e-61      11     254 ..      39     283 ..      29     287 .. 0.94

  Alignments for each domain:
  == domain 1  score: 206.8 bits;  conditional E-value: 6.7e-65
                   C.HHHHHHHHHHHHHHHTTCEEEEEECSTT-HHHHHHHHHHHHHTT-SEEEE--SSHHHHHHHHHHHHHTT-EEEEESTTGCTTT-CEEEEEC-HHH CS
  Peripla_BP_4  11 p.ffsaaregleeaakelgaevtvvgdaendaaeQvaqiedaiakgvdgiivapvdstalapalkkakaaGIpVvafdsddapsgerlayvgfdnea 106
                   + ++ ++r+ + + a+ lga+v+v + a+++ ++Q +qie++i++gvd++++ p +++ l+ ++k+ak++GI+V a+d+  +++++ + y++fdne+
    CTQ30517.1  39 ErWQ-KDRDIFVNKAESLGAKVFV-QSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAYDRM-INNADIDFYISFDNEK 132
                   5355.59999*************9.7******************************************************.**************** PP

                   HHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH...-TTCEECCEEESTTTCHHHHHHHHHHHHHTT.T.ECEEEESSCCHHHCH CS
  Peripla_BP_4 107 aGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke...ypgikivaevaganwdaekaqqalealltan.p.ldgilaandgmaega 198
                   +Ge+qa+ l++k+++  g++ ++ Gsp d+na+++ +g +kvlk+   +++i iv+++ + +w +e+a + +e+ ltan + +d+++a nd++a+ga
    CTQ30517.1 133 VGEMQAQSLVDKVPQ--GNYFLMGGSPVDNNAKLFRAGQMKVLKPyvdDGKIRIVGDQWVDGWLPENALKIMENALTANnNkIDAVVASNDATAGGA 227
                   **************7..9*****************************666******766779***************66347*************** PP

                   HHHHHHTTTTSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHH CS
  Peripla_BP_4 199 lealeaaglagkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavall 254
                   ++al a+glagkv++ gqDa+ + +++i +Gt+++tv+++   l+  a+e+av+l 
    CTQ30517.1 228 IQALTAQGLAGKVAISGQDADLAGVKRIISGTQTMTVYKPITTLATNAAEIAVELG 283
                   *****************************************************994 PP

>> Peripla_BP_1  Periplasmic binding proteins and sugar binding domain of LacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   1.6   5.5e-17   3.3e-13      25     244 ..      50     275 ..      28     311 .. 0.81

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 5.5e-17
                   HHHHHHTEEEEEEE-SSHHHHH.HHHHHHHHTT-SEEEEE-S-GG.HHHHHHHHHH.T-EEEEESS--B-TTTS-EEE.E-HHHHHHHHHHHHHHHH CS
  Peripla_BP_1  25 kaakehgvdvlllaageeedla.kaidllkakgidgliiatsdts.fdditakaes.gipvialedaidapdgvPcvi.pddtqageestqkLiaeg 117
                     a+ +g +v++  a+++e+++ ++i+ + ++g+d l+i    ++  +++ + a++ gi+v+a ++ i ++ +++ +i +d+ ++ge + q L+ + 
    CTQ30517.1  50 NKAESLGAKVFVQSANGNEETQmSQIENMINRGVDVLVIIPYNGQvLSNVIKEAKQeGIKVLAYDRMINNA-DIDFYIsFDNEKVGEMQAQSLVDKV 145
                   56899***********************************87777789999999988**************.***997579*************987 PP

                   HHHTGEEEEEE-TTSHHHHHHHHHHHHHHHTT-GGGEEEEE-SSSSHHHH...HHHH...HHHHTT-.TT-SEEE-SSHHHHHHHHHHHHHTT.--G CS
  Peripla_BP_1 118 hkrpiallegpesaltakervqGflaalaeaGlevkdvhvalgsndieda...aeal...nellesh.PeidaivaindeaalGavlalkkeGrlki 207
                    +    l++g      ak  + G +  l+     v d +++ + ++  d+   ++al   ++ l  +   ida+va nd +a Ga++al ++G l +
    CTQ30517.1 146 PQGNYFLMGGSPVDNNAKLFRAGQMKVLKPY---VDDGKIRIVGDQWVDGwlpENALkimENALTANnNKIDAVVASNDATAGGAIQALTAQG-LAG 238
                   5554799999999999999999******988...566666665555544322223331113345555599***********************.999 PP

                   GGEEEEEESSGGGHHHHTSSS--SEEEEEEE-HHHH. CS
  Peripla_BP_1 208 keevdsfiesvvvydgLkkaqdtilelsplaviqlpr 244
                   k ++      + +++ +   ++t+   +p+++  +++
    CTQ30517.1 239 KVAISGQDADLAGVKRIISGTQTMTVYKPITTLATNA 275
                   9999666666667776666677776666666666655 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.3   7.5e+03      78     100 ..      88     110 ..      41     110 .. 0.66
   2 !   22.7   0.1   1.7e-08   9.9e-05      66     152 ..     201     291 ..     162     299 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
                   EEESSCCHHHHHHHHHCCTT--T CS
  Peripla_BP_3  78 viaasDelAlgvlqalreaglrv 100
                   +i ++ ++   v++ ++++g++v
    CTQ30517.1  88 IIPYNGQVLSNVIKEAKQEGIKV 110
                   44477777778888888888876 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 1.7e-08
                   ...HHH.HHCC-SEEEEESSCCHHHHHHHHHCCTT--TTTTEEEEBSS--SCC...CSSSS--E.EEE--HHHHHHHHHHHHHHHHTT---S-- CS
  Peripla_BP_3  66 l..qal.klaalPtAviaasDelAlgvlqalreaglrvPedlsvigfddsela...alssPplT.tvrqpleelGraaaellldllegekappe 152
                   +  +al + +++ +Av+a +D++A g++qal+++gl+   ++++ g d  +la   ++ s   T tv+ p+ +l+ +aae+ ++l ++++ ++ 
    CTQ30517.1 201 ImeNALtANNNKIDAVVASNDATAGGAIQALTAQGLA--GKVAISGQDA-DLAgvkRIISGTQTmTVYKPITTLATNAAEIAVELGNDKQPKAD 291
                   23344443222558**********************9..*******996.4442555666655689*****************99766555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2539.30
//
Query:       CTQ30518.1  [L=513]
Description: fused D-xylose transporter subunits of ABC superfamily: ATP-binding components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-52  178.2   0.1    3.7e-30  105.2   0.1    2.2  2  ABC_tran     ABC transporter
    4.4e-12   46.4   0.1      9e-05   22.4   0.0    3.1  3  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
    0.00056   19.4   1.8       0.58    9.6   0.1    3.1  3  SMC_N        RecF/RecN/SMC N terminal domain
     0.0009   18.9   0.0      0.003   17.3   0.0    1.8  1  AAA_29       P-loop containing region of AAA domain
     0.0027   18.2   0.0     0.0068   16.9   0.0    1.7  1  AAA_23       AAA domain
     0.0086   16.0   0.2      0.046   13.6   0.0    2.3  2  RsgA_GTPase  RsgA GTPase
       0.01   15.6   0.0       0.02   14.6   0.0    1.4  1  AAA_15       AAA ATPase domain
  ------ inclusion threshold ------
       0.01   14.9   0.0      0.022   13.8   0.0    1.5  1  MCM          MCM P-loop domain
      0.012   14.4   2.0        4.5    6.0   0.1    3.3  3  ABC_ATPase   Predicted ATPase of the ABC class
      0.014   15.2   1.0        3.9    7.2   0.5    2.9  2  DEAD         DEAD/DEAH box helicase
      0.016   15.4   0.1          1    9.6   0.0    3.0  2  SbcCD_C      Putative exonuclease SbcCD, C subunit
      0.019   14.7   0.0       0.11   12.2   0.0    2.2  2  AAA_30       AAA domain
      0.031   14.6   8.7      0.076   13.3   2.9    3.3  3  AAA_22       AAA domain
      0.033   13.6   0.7       0.35   10.2   0.1    2.6  3  TniB         Bacterial TniB protein
      0.036   13.7   0.7       0.31   10.6   0.1    2.7  2  AAA_25       AAA domain
      0.045   13.9   0.5       0.37   10.9   0.5    2.5  1  AAA_33       AAA domain
      0.045   14.1   1.1       0.85   10.0   0.4    2.8  3  AAA_16       AAA ATPase domain
      0.061   13.3   0.1        1.1    9.3   0.0    2.6  3  TsaE         Threonylcarbamoyl adenosine biosynthesis protein
        0.1   12.5   0.1       0.29   11.0   0.0    1.8  2  NACHT        NACHT domain
       0.17   10.7   0.0       0.41    9.4   0.0    1.5  2  DLIC         Dynein light intermediate chain (DLIC)
       0.23   10.6   0.0       0.37    9.9   0.0    1.4  1  G-alpha      G-protein alpha subunit


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.1   4.3e-33   3.7e-30       1     137 []      20     171 ..      20     171 .. 0.96
   2 !   71.1   0.0   1.5e-22   1.3e-19       2     136 ..     278     433 ..     277     434 .. 0.85

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 4.3e-33
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................x RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................e 80 
                 ++nvsl l++ge+v + GenG+GKStL+k+l+g +     eGei + g+ l+  + +   rk i++++qe  l ++ltv en                +
  CTQ30518.1  20 VDNVSLRLNAGEVVSLCGENGSGKSTLMKVLCGIYPHgsYEGEIIFAGETLQAnHIRDTERKGIAIIHQELALVKHLTVLENiflgaeisrhglldyeT 118
                 58*********************************9899*************977888999**************************999999999888 PP

                 HHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++ +++k+l++++l+  +dt+v      L  Gq+q v++a+al k+ +ll+lDEpta
  CTQ30518.1 119 MTLRCQKLLAQVNLPISPDTRV----GDLGLGQQQLVEIAKALNKQVRLLILDEPTA 171
                 8888******************....*****************************97 PP

  == domain 2  score: 71.1 bits;  conditional E-value: 1.5e-22
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS...--S-TTSBHHHH................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx...xxxxxxxxxxxx................ RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp.teGeilldgkdlke.qeleslrkeigvlpqe...pqlfpeltvren................ 79 
                 ++vs++l++ge+++i G  GaG +  +++l g      +Gei +dg++++  +  +   + i+++p++   + + p + v++n                
  CTQ30518.1 278 NDVSFSLRRGEILGIAGLVGAGRTEAVQCLFGVWPGrWQGEIFIDGQPVSIsNCQQAIAHGIAMVPEDrkkDGIVPVMAVGKNitlaalnqftgamssl 376
                 89******************************987768************9777888999********999999999999999***9998888888877 PP

                 ...HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                    +++  i++ +++l++k    +  +     LSgG +q+  lar+ll +p++l+lDEpt
  CTQ30518.1 377 ddaAEQHCIQQSIQRLKIKT---SSPELAIGRLSGGNQQKAILARCLLLNPRILILDEPT 433
                 43222222555555555555...4444458*****************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   9.8e-05     0.084       4      19 ..      35      50 ..      32      79 .. 0.84
   2 !    7.9   0.1    0.0029       2.5     234     297 ..     140     200 ..     124     205 .. 0.89
   3 !   22.4   0.0   1.1e-07     9e-05     219     296 ..     383     462 ..     329     469 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.8e-05
      AAA_21  4 liGpNgsGKSnLLdal 19
                l G NgsGKS+L++ l
  CTQ30518.1 35 LCGENGSGKSTLMKVL 50
                89************99 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0029
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 + +l+ G+++l  ++ al  +    +ll++DEp ++L  + +++ll ++++l+++++ +i  +H
  CTQ30518.1 140 VGDLGLGQQQLVEIAKALNKQV---RLLILDEPTASLTEQETATLLAIVRDLQNHDIACIYISH 200
                 5788999999988888888777...*************************************** PP

  == domain 3  score: 22.4 bits;  conditional E-value: 1.1e-07
      AAA_21 219 r.....gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296
                        +++  +++  el +  lS G ++  a+l+ +l +++  ++l++DEp  g++  +  ++++l+++l + g+ vi+ +
  CTQ30518.1 383 HciqqsIQRLKIKTSSPELAIGRLSGGNQQK-AILARCLLLNP--RILILDEPTRGIDIGAKYEIYKLINQLVQQGIAVIVIS 462
                 1444447888888899999************.**********9..*****************************9**998865 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1   0.00068      0.58      25      43 ..      31      49 ..      13      54 .. 0.81
   2 !    5.8   0.1    0.0096       8.2     155     213 ..     157     216 ..     100     222 .. 0.83
   3 ?    1.7   0.0      0.17   1.4e+02     135     197 ..     388     463 ..     313     482 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00068
                SEEEEEESTTSSHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
       SMC_N 25 sftaivGpNGSGKsnlldA 43
                ++ ++ G+NGSGKs l+  
  CTQ30518.1 31 EVVSLCGENGSGKSTLMKV 49
                477899*********9976 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0096
                 CCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 155 kvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadklvgvtk 213
                   k+  l +lDe  a L e++++ +  +++  +++    i is++ + ++  + ++ v  
  CTQ30518.1 157 LNKQVRLLILDEPTASLTEQETATLLAIVRDLQNHdIACIYISHKLNEVKAISDTICVIR 216
                 45677899**********************887766999******999998877776655 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.17
                 T................CS-HH..HHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-S CS
                 x................xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
       SMC_N 135 e................lLSgG..ektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivisl 197
                 +                 LSgG  +k+++a  Ll      +p+ + +lDe    +D     ++ +l+++  ++   +ivis 
  CTQ30518.1 388 SiqrlkiktsspelaigRLSGGnqQKAILARCLL-----LNPR-ILILDEPTRGIDIGAKYEIYKLINQLVQQgIAVIVISS 463
                 1333333344666666699999333444444444.....3444.67899999999999999999999988776677888875 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   3.5e-06     0.003      13      39 ..      21      47 ..      18      54 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.5e-06
      AAA_29 13 dghtieidlkgatlltGpsGsGKSTll 39
                d+ +++++  +++ l G++GsGKSTl+
  CTQ30518.1 21 DNVSLRLNAGEVVSLCGENGSGKSTLM 47
                5677888866699*************8 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   7.9e-06    0.0068      11      40 ..      21      51 ..       5      58 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.9e-06
      AAA_23 11 rdqeidFsk.gltlItGpNGaGKTTildAik 40
                +++++ ++   ++ ++G+NG+GK+T++  ++
  CTQ30518.1 21 DNVSLRLNAgEVVSLCGENGSGKSTLMKVLC 51
                666677766358899************9988 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   5.3e-05     0.046      88     122 ..      18      53 ..       5      87 .. 0.72
   2 ?   -1.8   0.0         3   2.6e+03      66      96 ..     445     468 ..     436     507 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.3e-05
                  TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  88 egleelkellkd.ktsvlvGqSGvGKStLinallpe 122
                  +++++++ +l+  +++ l+G+ G GKStL+++l + 
   CTQ30518.1  18 KAVDNVSLRLNAgEVVSLCGENGSGKSTLMKVLCGI 53 
                  55667777777669******************9875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3
                  HHHHHHHHHTTSEEEE--TTTHTTHHHHHHH CS
  RsgA_GTPase  66 eelkeelealgyevllvsaktkegleelkel 96 
                   +l ++l + g++v+++s++       l e+
   CTQ30518.1 445 YKLINQLVQQGIAVIVISSE-------LPEV 468
                  55556666666666666555.......3333 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.3e-05      0.02      18      43 ..      24      50 ..      18      81 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.3e-05
      AAA_15 18 eidlsee.ltvliGkNnsGKSsileal 43
                ++ l+   +  l+G+N+sGKS+++++l
  CTQ30518.1 24 SLRLNAGeVVSLCGENGSGKSTLMKVL 50
                55555545999*************998 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.6e-05     0.022      41     111 ..      14      84 ..       9      94 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.6e-05
                 H---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSEEEEESSSSSEE CS
         MCM  41 fggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaavvrdeetgefv 111
                 fg+vk  ++ + +l +   v l+g+ g +Ks+l+k ++ + p++ y       ++ L a   rd+e + ++
  CTQ30518.1  14 FGAVKAVDNVSLRLNAGEVVSLCGENGSGKSTLMKVLCGIYPHGSYEGEIIFAGETLQANHIRDTERKGIA 84 
                 677776666666666666799*************************9999999999999999999888755 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.015        13     244     272 ..      29      57 ..      20      69 .. 0.85
   2 ?    1.4   0.1      0.13   1.1e+02     355     412 ..     163     216 ..     149     234 .. 0.77
   3 ?    6.0   0.1    0.0053       4.5     378     418 ..     446     485 ..     442     511 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.015
                 SS.EEEEEE-TTSSHHHHHHHHHHCCSEE- CS
  ABC_ATPase 244 kG.vtlIvGggfhGKsTLLeAlekGvynhv 272
                  G v+ + G +  GKsTL++ l  G+y+h 
  CTQ30518.1  29 AGeVVSLCGENGSGKSTLMKVL-CGIYPHG 57 
                 56688899************98.6999995 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.13
                 HH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEE CS
  ABC_ATPase 355 lmirDermqelvskekepitplvdrvrelykklgvstilvvggsgdyldvAdtvilme 412
                 l+i De  ++l+  e+e+  +l+  vr+l +++++  i ++  +++  +++dt+ +++
  CTQ30518.1 163 LLILDEPTASLT--EQET-ATLLAIVRDL-QNHDIACIYISHKLNEVKAISDTICVIR 216
                 667777777777..4444.4577788888.8888888888888888888888887765 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0053
                 HCHHHHHHHH--EEEEEESS-GCCTTT-SEEEEEETTEEEE CS
  ABC_ATPase 378 drvrelykklgvstilvvggsgdyldvAdtvilmeeykpkd 418
                 +++++l  + g+ +i++++ + + l ++d+v++m+e + k+
  CTQ30518.1 446 KLINQL-VQQGIAVIVISSELPEVLGLSDRVLVMHEGRLKA 485
                 567777.578*************************976654 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.5    0.0046       3.9      13     149 ..      29     188 ..      19     199 .. 0.65
   2 ?    4.8   0.0     0.025        21     119     166 ..     421     462 ..     358     469 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0046
                 TTCEEEEEESTTSSHHHHHHHHHHHHHHHS..................TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTlaflipvlqivyet..................kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlsk 93 
                  g+ v +++e GsGK++   + vl  +y +                   ++t+ k + +   +    ++l+ l++++  ++++ + ++  ++ +   +k
  CTQ30518.1  29 AGEVVSLCGENGSGKSTL--MKVLCGIYPHgsyegeiifagetlqanhIRDTERKGIAIIHQELALVKHLTVLENIFLGAEISRHGLLDYETMTLRCQK 125
                 466777888888888876..3344445555566667777777777766344444555555444444567777777777777777766666666666666 PP

                 HHTTCSEEEEEHHHHHHHH.......HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  94 ldngvdivvgtpgrlddll.......stgklnlsqvrflVlDEadrlldqgfsdfinrilnql 149
                 l ++v++ ++   r+ dl        +  k   +qvr+l+lDE    l ++   ++ +i++ l
  CTQ30518.1 126 LLAQVNLPISPDTRVGDLGlgqqqlvEIAKALNKQVRLLILDEPTASLTEQETATLLAIVRDL 188
                 66777777777777777555543333333333899********99999888888888888877 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.025
                 CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 119 lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlS 166
                 l + r+l+lDE  r  d g + +i +++nql q+         viv+S
  CTQ30518.1 421 LLNPRILILDEPTRGIDIGAKYEIYKLINQLVQQ------GIAVIVIS 462
                 67789**************************332......23366666 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0012         1      55      89 ..     152     186 ..     143     187 .. 0.81
   2 ?    2.0   0.1      0.29   2.5e+02      31      42 ..     404     415 ..     388     449 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
     SbcCD_C  55 ssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 + a++ ++++rl++LDE  ++l e+ +atll++++
  CTQ30518.1 152 EIAKALNKQVRLLILDEPTASLTEQETATLLAIVR 186
                 444446899*********************99876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.29
     SbcCD_C  31 gtlSGGekqfla 42 
                 g+lSGG +q+++
  CTQ30518.1 404 GRLSGGNQQKAI 415
                 666666666554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013      0.11      19     114 ..      31     187 ..      21     198 .. 0.59
   2 ?   -2.6   0.0       4.4   3.8e+03      20      42 ..     289     311 ..     284     320 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
      AAA_30  19 rvavltGpAGtGKttalkalreaweaag..grviglAptgkaAkvLaeelgieastiakllkrlk.................................. 81 
                  v+ l G  G+GK+t++k+l  ++ +    g++ ++A +  +A+ +++      + i++ l   k                                  
  CTQ30518.1  31 EVVSLCGENGSGKSTLMKVLCGIYPHGSyeGEI-IFAGETLQANHIRDTERKGIAIIHQELALVKhltvleniflgaeisrhglldyetmtlrcqklla 128
                 488899*****************9988432455.55555556677774333333333333333333333444444444444444444444444444444 PP

      AAA_30  82 .........................grarlepg.tllivDE.agmvdtkqlaallkaaek 114
                                          + ++l+++ +lli DE ++ +  +++a+ll+++++
  CTQ30518.1 129 qvnlpispdtrvgdlglgqqqlveiA-KALNKQvRLLILDEpTASLTEQETATLLAIVRD 187
                 45588888888888888888887753.456666688888884334455556666665555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.4
      AAA_30  20 vavltGpAGtGKttalkalreaw 42 
                 +  + G  G+G t a++ l  +w
  CTQ30518.1 289 ILGIAGLVGAGRTEAVQCLFGVW 311
                 55688999*****9999887777 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.9   8.9e-05     0.076       7     125 ..      32     195 ..      28     203 .. 0.75
   2 ?   -1.3   0.1       2.9   2.4e+03       6      25 ..     288     307 ..     285     309 .. 0.81
   3 ?   -2.6   0.0       7.2   6.1e+03      92     104 ..     424     437 ..     407     463 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.9e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaee....................................erpevvfvtlpsst.....sskdllrellral 64 
                 ++ ++Ge G+GK+tl++ l   ++  ++  e                                     +  ++  +++  +     + +  +++ll ++
  CTQ30518.1  32 VVSLCGENGSGKSTLMKVLCGIYPHGSYEGEiifagetlqanhirdterkgiaiihqelalvkhltvLENIFLGAEISRHGlldyeTMTLRCQKLLAQV 130
                 5679******************99888777799999999999999999999999999998887776644444455555555555646666699999999 PP

      AAA_22  65 glelkaerlsseellealeqalrarav.....ielliiDEaqh.lr...seealeeLrsllnlsrkgvql 125
                 +l+ +   +++   l + +q+l + a+     ++lli+DE    l+   ++++l  +r+l+n   ++++ 
  CTQ30518.1 131 NLPISP--DTRVGDLGLGQQQLVEIAKalnkqVRLLILDEPTAsLTeqeTATLLAIVRDLQN---HDIAC 195
                 988888..77777777777777777777777889******9998954322666666677777...55554 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.9
      AAA_22   6 gilvvtGesGtGKTtllrrl 25 
                  il + G +G+G+T  ++ l
  CTQ30518.1 288 EILGIAGLVGAGRTEAVQCL 307
                 577799********998866 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 7.2
      AAA_22  92 ielliiDEaqh.lr 104
                 +++li+DE  + ++
  CTQ30518.1 424 PRILILDEPTRgID 437
                 57888888666553 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.2   1.9e+03      39      53 ..      34      48 ..      28      60 .. 0.84
   2 ?   10.2   0.1   0.00041      0.35      89     152 ..     125     191 ..     122     201 .. 0.83
   3 ?   -0.3   0.0      0.69   5.9e+02     112     129 ..     416     433 ..     405     453 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.2
        TniB 39 llvGdsnnGKtmive 53
                 l+G+   GK+++++
  CTQ30518.1 34 SLCGENGSGKSTLMK 48
                689*********987 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00041
        TniB  89 aiLealgaplkararvskl...eqqvlrllrel..kvrvLiiDEihnllagsarkqreflnalksLgne 152
                 ++L++++ p+++++rv +l   +qq +++ ++l  +vr+Li+DE    l  + ++  ++l++++ L+n+
  CTQ30518.1 125 KLLAQVNLPISPDTRVGDLglgQQQLVEIAKALnkQVRLLILDEPTASL--TEQETATLLAIVRDLQNH 191
                 7899999999999999876555788888888764479*******99999..8889999********995 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.69
        TniB 112 lrllrelkvrvLiiDEih 129
                 l+ +  l++r+Li+DE  
  CTQ30518.1 416 LARCLLLNPRILILDEPT 433
                 455556799*******65 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00036      0.31      29      55 ..      26      52 ..      19     200 .. 0.72
   2 ?   -1.2   0.0       1.4   1.2e+03      68     107 ..     452     491 ..     445     511 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00036
      AAA_25 29 llpagelallaGapgtGKttlaldlal 55
                 l age++ l+G  g+GK+tl   l+ 
  CTQ30518.1 26 RLNAGEVVSLCGENGSGKSTLMKVLCG 52
                6899*****************877765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.4
      AAA_25  68 apeqgkVlyvsaEdsed.elrrRlravgealrddarllvld 107
                 + + ++V+++s E +e  +l  R+  ++e  r++a+l   +
  CTQ30518.1 452 VQQGIAVIVISSELPEVlGLSDRVLVMHEG-RLKANLVNQH 491
                 567889999999999877899999988887.4666664433 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   0.00044      0.37       1      20 [.      32      51 ..      32     206 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00044
      AAA_33  1 lvllvGlpGsGKstlaerll 20
                +v l+G +GsGKstl + l+
  CTQ30518.1 32 VVSLCGENGSGKSTLMKVLC 51
                7899************9886 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.4     0.001      0.85      18      45 ..      26      51 ..      16     196 .. 0.76
   2 ?   -1.7   0.0       3.8   3.3e+03      72     105 ..     153     185 ..     137     212 .. 0.63
   3 ?    1.6   0.0      0.37   3.2e+02      20      63 ..     285     328 ..     270     431 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.001
      AAA_16 18 rvrsgrpelvllsGesGvGKsslvrell 45
                r+++g  e+v l Ge G+GKs+l++ l 
  CTQ30518.1 26 RLNAG--EVVSLCGENGSGKSTLMKVLC 51
                44555..89**************98776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3.8
      AAA_16  72 laqalareellrqlldeaesaeleawrekleeal 105
                 +a+al ++++   +lde+++++ e+  ++l++ +
  CTQ30518.1 153 IAKAL-NKQVRLLILDEPTASLTEQETATLLAIV 185
                 56666.3355555555655555555555444443 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.37
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekd..ggiflrgkcdql 63 
                 r+g  e++ + G  G G +  v++l+  + ++  g if+ g+ ++ 
  CTQ30518.1 285 RRG--EILGIAGLVGAGRTEAVQCLFGVWPGRwqGEIFIDGQPVSI 328
                 444..78999999999999999999986666655456666666655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0013       1.1      11      40 ..      24      51 ..       6      60 .. 0.74
   2 ?   -2.7   0.0       6.5   5.5e+03      26      43 ..     141     157 ..     135     175 .. 0.74
   3 ?    0.5   0.0      0.68   5.8e+02      19      39 ..     287     307 ..     270     311 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
                HHHHHHCHTEEEEEEESTTSSHHHHHHHHH CS
        TsaE 11 gkklakalgdvilLeGdLGaGKTtlvrgla 40
                  +l +  g+v+ L G+ G+GK+tl++ l+
  CTQ30518.1 24 SLRLNA--GEVVSLCGENGSGKSTLMKVLC 51
                333333..889***************9987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.5
                 ESTTSSHHHHHHHHHHHT CS
        TsaE  26 GdLGaGKTtlvrglakal 43 
                 GdLG G  +lv  +akal
  CTQ30518.1 141 GDLGLGQQQLVE-IAKAL 157
                 889999888874.44444 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.68
                 TEEEEEEESTTSSHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrgl 39 
                 g+++ + G +GaG T  v+ l
  CTQ30518.1 287 GEILGIAGLVGAGRTEAVQCL 307
                 7788999********999876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00034      0.29       2      28 ..      32      58 ..      31      91 .. 0.80
   2 ?   -3.4   0.0       9.2   7.8e+03     117     132 ..     157     172 ..     141     196 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00034
                CEEEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegk 28
                +v l Ge+GsGK+tL++ l+    +g 
  CTQ30518.1 32 VVSLCGENGSGKSTLMKVLCGIYPHGS 58
                67899***********99886665555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 9.2
                 TTT--EEEEEEECCCH CS
       NACHT 117 llpeasllltvrpral 132
                 l ++++ll+   p+a+
  CTQ30518.1 157 LNKQVRLLILDEPTAS 172
                 4444444444444444 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00048      0.41      19      51 ..      24      56 ..      17     102 .. 0.72
   2 ?   -3.0   0.0       2.8   2.4e+03     242     278 ..     182     218 ..     176     224 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00048
        DLIC 19 ssklPsgksvlvlGedgsGkttliaklqGveee 51
                s +l +g  v + Ge+gsGk+tl+  l G+  +
  CTQ30518.1 24 SLRLNAGEVVSLCGENGSGKSTLMKVLCGIYPH 56
                557999999******************999654 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.8
        DLIC 242 ytsvkedknldllykylvhkiyglpfrtPalvvekda 278
                  + v++ +n d+   y+ hk+ +++  + ++ v +d 
  CTQ30518.1 182 LAIVRDLQNHDIACIYISHKLNEVKAISDTICVIRDG 218
                 4568888999***********9999888888887776 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00043      0.37      26      70 ..      33      77 ..      16     209 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00043
                EEEEESTTSSHHHHHHHHHHHCS----HHHHHCCHHHHHHHHHHH CS
     G-alpha 26 llllGqseSGKsTilkqlkllykkgfseeelatwraviqlnivrs 70
                + l+G+++SGKsT++k l  +y +g  e e+    + +q n +r+
  CTQ30518.1 33 VSLCGENGSGKSTLMKVLCGIYPHGSYEGEIIFAGETLQANHIRD 77
                569****************99988855554433455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 3563.36
//
Query:       CTQ30519.1  [L=393]
Description: D-xylose transporter subunit; membrane component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-47  162.1  51.5    1.4e-47  162.1  51.5    2.0  2  BPD_transp_2  Branched-chain amino acid transport system / pe
  ------ inclusion threshold ------
       0.26   11.2   3.5        1.8    8.5   3.5    2.5  1  DUF1072       Protein of unknown function (DUF1072)


Domain annotation for each model (and alignments):
>> BPD_transp_2  Branched-chain amino acid transport system / permease component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.15   1.3e+03      37      47 ..      31      41 ..       6      51 .. 0.55
   2 !  162.1  51.5   1.5e-51   1.4e-47       1     268 []      56     383 ..      56     383 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.15
  BPD_transp_2 37 malGayvaall 47
                  ++++a+v+ +l
    CTQ30519.1 31 VMIAAIVVIML 41
                  22222222221 PP

  == domain 2  score: 162.1 bits;  conditional E-value: 1.5e-51
  BPD_transp_2   1 gilnlltlaailaiaAlGlalvfgiaGvinlghggfmalGayvaalllalllsllllallvallvgaavglllgllvlrlkvdeliitllllsvlvg 97 
                   +i+nll+++ai +i+A+G+ +v+ i+ +i+l++g++m+l + +aa+  + l+++l+l++lv l++g+++g+++g+ v++ kv+++i+tl+++++++g
    CTQ30519.1  56 NISNLLRQTAITGILAVGMVFVI-ISAEIDLSVGSMMGLLGGAAAIFDVWLGWPLPLTILVTLVMGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRG 151
                   689********************.***************999999999999999******************************************* PP

  BPD_transp_2  98 ltlllltgitsgvkgqssvkellgfagallsflsaviv........................................................... 135
                   ++     git+g++ +++ ++++++ + +l+ + ++                                                             
    CTQ30519.1 152 ILI----GITNGTTVSPTSPAMSQIGQSYLPDGIGFGIgvvgmavfivwqwrgrmrrqalglatssstaavgrqaitavivlgaiwllndyrgvptp 244
                   ***....88888888888888888888888776665556888******************************************************* PP

  BPD_transp_2 136 .llalllvlavllllrrtrfGralravgeneeaaralGinvkrvklltfvisgalAglaGallalllgsippnigvglgfnaiaavvlGga...... 225
                    l++++l+la l++ +rt fGr+++a+g+n eaar++Ginv+r+kl++f+i g++ ++aG++l+ +lg+++p++g  ++++aiaa+v+Gg+      
    CTQ30519.1 245 vLILAALLLAGLFMATRTAFGRRIYAIGGNLEAARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGGTslaggi 341
                   *99********************************************************************************************** PP

  BPD_transp_2 226 gsllgtviGaliigvvksllltllgiptelarvllgallilvl 268
                   gs++g+v+Ga+i++++++ +++++ ++t +++++ ga+l+l++
    CTQ30519.1 342 GSVAGAVMGAFIMSALDN-GMSMMDVATFWQYIVKGAILLLAV 383
                   ******************.999999***************986 PP

>> DUF1072  Protein of unknown function (DUF1072)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.5    0.0002       1.8       6      29 ..     326     350 ..     322     357 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0002
     DUF1072   6 VIAvCvLalTvlag.igavagcCvG 29 
                  IA+Cv+  T lag ig vag  +G
  CTQ30519.1 326 AIAACVIGGTSLAGgIGSVAGAVMG 350
                 6************999988886555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1071  (0.0597356); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2854.39
//
Query:       CTQ30520.1  [L=392]
Description: DNA-binding transcriptional activator, xylose-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-36  125.4   0.0    5.6e-36  124.4   0.0    1.5  1  Peripla_BP_3  Periplasmic binding protein-like domain
    3.2e-23   81.3   0.0    1.2e-12   47.6   0.1    2.5  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
    1.1e-19   70.4   0.0    3.3e-19   68.9   0.0    1.8  1  HTH_18        Helix-turn-helix domain
    1.5e-09   37.8   0.0    2.5e-09   37.1   0.0    1.3  1  Peripla_BP_4  Periplasmic binding protein domain


Domain annotation for each model (and alignments):
>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   0.0   1.2e-39   5.6e-36       3     166 .]     113     277 ..     111     277 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 1.2e-39
                   HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHH.HHCC.-S.EEEEESSCCHHHHHHHHHCCT CS
  Peripla_BP_3   3 hLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqal.klaa.lP.tAviaasDelAlgvlqalrea 96 
                   hL+e+G  r+af+g + ++g++++ ere +f+q +++ +++  ++++ ++ p++ ++a+++l    + +l++ +P t++ia +D+ A +vlqa++  
    CTQ30520.1 113 HLKEKGVHRFAFYGLPISSGKRWAVEREYAFCQLVAKEKYRGVVYQGLETAPENWQHAQNRL----AdWLQTlPPqTGIIAVTDARARHVLQACELL 205
                   9*************999999***************************************999....34555546667******************** PP

                   T--TTTTEEEEBSS--SCC.CSSSS--EEEE--HHHHHHHHHHHHHHHHTT---S--EEEE--.EEE--GGG CS
  Peripla_BP_3  97 glrvPedlsvigfddsela.alssPplTtvrqpleelGraaaellldllegekappeqvllpp.elveReSt 166
                   ++ vPe+l vig+d++el+ +ls+ +l++v+q ++++G++aa+ll++ll++e  p +++l+pp ++veR+St
    CTQ30520.1 206 HIPVPEKLCVIGIDNEELTrYLSRVALSSVAQGTRQMGYQAAKLLHRLLNNEALPLQRQLIPPmRVVERRST 277
                   *******************888888************************999999999997777*******8 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   3.3e-11   1.5e-07       1      42 []     294     335 ..     294     335 .. 0.94
   2 !   47.6   0.1   2.7e-16   1.2e-12       6      41 ..     348     384 ..     346     385 .. 0.97

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 3.3e-11
                 HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 +r+n++ ++++e++ d++g+Srs++ ++Fk+e+G+t++ +++
  CTQ30520.1 294 IRNNACKGIKVEQVLDAVGISRSNLEKRFKEEVGETIHTVIH 335
                 799*********************************987665 PP

  == domain 2  score: 47.6 bits;  conditional E-value: 2.7e-16
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyr 41 
                 st+l+i++i++++g+ S +yF+ +Fkke+++tP++yr
  CTQ30520.1 348 STSLSINEISQMCGYpSLQYFYSVFKKEYDVTPKEYR 384
                 79**********************************9 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   7.3e-23   3.3e-19       3      81 .]     309     386 ..     307     386 .. 0.97

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 7.3e-23
                 HHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHHH CS
      HTH_18   3 aalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrrr 81 
                 +a+g+sr+ L+++fk+++g t +++++  +le+Ar+lL+ +t+ls+ ei   +G+ +l++F+  f+k + +tP+eyr r
  CTQ30520.1 309 DAVGISRSNLEKRFKEEVGETIHTVIHSEKLEKARSLLV-STSLSINEISQMCGYPSLQYFYSVFKKEYDVTPKEYRDR 386
                 689***********************************8.5************************************86 PP

>> Peripla_BP_4  Periplasmic binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   5.5e-13   2.5e-09      80     257 ..      77     257 ..      59     258 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 5.5e-13
                   T-EEEEESTT..GCTTT-CEEEEEC-HHHHHHHHHHHHHHHCTTH.EEEEEETSCCCHHHHHHHHHHHHHHHHH..-TTCEECC.EEESTTTCHHHH CS
  Peripla_BP_4  80 GIpVvafdsd..dapsgerlayvgfdneaaGelqaeylaeklggkkgkvvilaGspgdpnaeeriegfrkvlke..ypgikiva.evaganwdaeka 171
                   ++p+v +     + ++++ ++y+++dn a  e +   l+ek  ++   ++ l  s g + a er+ +f +  ++  y g+ + + e  +a ++ + a
    CTQ30520.1  77 HVPIVGVGGSyhQPEQYPPVHYIATDNAALVESAFLHLKEKGVHR-FAFYGLPISSGKRWAVEREYAFCQLVAKekYRGVVYQGlE--TAPENWQHA 170
                   5677765555555699****************************9.9999999999********9999888777676666666633..445777899 PP

                   HHHHHHHHH..TTTECEEEESSCCHHHCHHHHHHHTTT.TSTEEEEEES-HHHHHHHHHTTSSEEEEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_4 172 qqaleallt..anpldgilaandgmaegalealeaagl.agkvvvtgqDatpealeaikdGtidatvaqdpyelgyaavelavallkGk 257
                   q++l+++l+  + p  gi+a+ d+ a+ +l+a e   +  ++ +++ ++ ++e l++  +    ++vaq ++++gy+a++l+ +ll+++
    CTQ30520.1 171 QNRLADWLQtlP-PQTGIIAVTDARARHVLQACELLHIpVPE-KLCVIGIDNEELTRYLSRVALSSVAQGTRQMGYQAAKLLHRLLNNE 257
                   *********542.369*********************96444.4777777777777777777788*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3070.12
//
Query:       CTQ30521.1  [L=187]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-17   64.2   0.3    1.9e-17   63.5   0.3    1.3  1  Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylgluc


Domain annotation for each model (and alignments):
>> Glucosaminidase  Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.3   1.1e-21   1.9e-17       6      86 ..      57     180 ..      54     181 .. 0.77

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 1.1e-21
                      HHHHHCT.-H.HHHHHHHHHHHTTTTCHHHHHCT-TSE.B...........HCTE-SSHHHHHHHH.SHHHH........HCC........... CS
  Glucosaminidase   6 eaakkygipp.svalaqaalEsgwgtsrlakeqnNlfGik...........kfrkydsveesirah.kllss........skk........... 67 
                      ++ ++++i p s+++ +aa Esgwgtsrla+e+nNlfG+k            + +++sve+s++a+  +l++        + +           
       CTQ30521.1  57 ALLERVDIIPnSMVATMAAAESGWGTSRLARENNNLFGMKcgagrcrgamkGYSQFESVEQSVQAYvTNLNThpayssfrK-Srlqlrkadqev 149
                      67789999998***************************9777777777666678************77**99777655541.145555556666 PP

                      ...........HEC.ECTHCCHHHHHHHHCT CS
  Glucosaminidase  68 ...........yat.dpaYaekliaiikklk 86 
                                 y+t  ++Y + l a++++++
       CTQ30521.1 150 tastmihklkgYSTkGSSYNNYLFAMYQDNQ 180
                      6666666666666436679999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1642.56
//
Query:       CTQ30522.1  [L=677]
Description: alpha-amylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-38  132.4   8.6    9.3e-38  130.6   8.6    1.9  1  Alpha-amylase  Alpha amylase, catalytic domain
  ------ inclusion threshold ------
       0.13   12.0   5.8       0.86    9.3   0.0    2.8  2  DUF5484        Family of unknown function (DUF5484)


Domain annotation for each model (and alignments):
>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   8.6     1e-41   9.3e-38       1     328 [.     226     594 ..     226     598 .. 0.76

  Alignments for each domain:
  == domain 1  score: 130.6 bits;  conditional E-value: 1e-41
                    --CHHHHCTCCCCCCCT-SCEEE-B-CE..............-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSC CS
  Alpha-amylase   1 GDLkGiiekLdYlkeLGvtaiwlsPifk..............spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehe 82 
                    GDL+G+++kLdYl+++Gv+a+w+s   +                +a+hgY ++d+ k+d + Gt +dl +L+++ah++gi++++D+V+NH +++  
     CTQ30522.1 226 GDLQGLTSKLDYLQQMGVNALWISSPLEqihgwvgggtkgdfPHYAYHGYYTQDWSKLDANMGTEADLRRLVDEAHKRGIRILFDVVMNHAGYATL 321
                    9***********************99999************97789**********************************************9988 PP

                    C............CHCCHHSTTSGGGCCC-E....................ESS-STTC-TTTTCSCEE..............CTTTTCEEESSS- CS
  Alpha-amylase  83 w............fkeslkkkgepkrdyyiwkegk..............eekeppnnwkslfdgsawey..............dekaqeyylhlfl 138
                                   ++l  k+   +++++wk+g                             ++ we               d+ +    l + l
     CTQ30522.1 322 AdmqefqfgslylQGDEL--KKTLGERWTDWKPGAgqtwhsfndyinfsD-------------KAGWEKwwgkkwirtdigdyDNPGY-DDLTMSL 401
                    877777765554322222..233478999999998655544444433332.............3333322333223112221122222.2488889 PP

                    TTS-BB-TTTCC.......................CCCCCCCCCCCCCTTT.-SEEEETTCCCTTTCCCC...HCCHCCHHHHHHHHHHHTCCGTT CS
  Alpha-amylase 139 kklpdLntenee.......................vrkelkdvvkfwlekg.idGfRlDvvkhvskveal...esngeflheftqalnetvasrke 207
                    + lpdL+te++e                        r +l   ++ w+++  idGfR+D++khv++++ +   ++ +  l e+++a + ++ +   
     CTQ30522.1 402 AFLPDLKTESKEisglpnfyshkpdtaakaipgytPRDYLTHWLSQWVRDYgIDGFRVDTAKHVEMDAWQqlkTQATAALAEWKKANPDKALDAAP 497
                    99****************************9999888888888888877656**************66557878889999********9999**** PP

                    -EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHHHHHHHHHHHHS-CCCTTCEEES--TTS--HHHHTTSSTTTT CS
  Alpha-amylase 208 vmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakklkellkkwlkaleeaaeeavtflgnHDqeRilsrlgddsaea 303
                    + + gE +++   +++ + + + +++   +d++++ ++ ++          +++++ + ++++++l+  + +   +l +HD+  +    g      
     CTQ30522.1 498 FWMTGEAWGHG--VMQSDYYRHGFDAMINFDYQDQAAKAATC---------MANIDLTWQQMADKLQ--SFNVLSYLSSHDTR-LFREGG------ 573
                    ********944..46777777778777555555555444444.........4444444444444444..4566789*****74.433333...... PP

                    HHHHHHHHHCCCTSSSEEEEETTCC CS
  Alpha-amylase 304 ekklklaaillltlrGvpviYyGeE 328
                          aa+lll+ +G   i+yG+E
     CTQ30522.1 574 ----ATAAELLLLAPGAVQIFYGDE 594
                    ....4568999999*********99 PP

>> DUF5484  Family of unknown function (DUF5484)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   9.6e-05      0.86       7      20 ..      83      96 ..      81     103 .. 0.81
   2 ?    0.7   4.7     0.048   4.3e+02      24      42 ..     357     374 ..     350     377 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 9.6e-05
     DUF5484  7 LfkqGLYtLnvtPk 20
                +f+qGLYtL v  +
  CTQ30522.1 83 IFRQGLYTLEVDTR 96
                6*********9655 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.048
     DUF5484  24 tkWsvnDWikfiDenGnWe 42 
                 t  s nD+i f D  G We
  CTQ30522.1 357 TWHSFNDYINFSDKAG-WE 374
                 6679*********998.55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 5017.36
//
Query:       CTQ30523.1  [L=418]
Description: valine-pyruvate aminotransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-21   76.1   0.0    1.4e-20   73.8   0.0    1.8  1  Aminotran_1_2    Aminotransferase class I and II
      0.004   16.5   0.0      0.007   15.7   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.023   13.5   0.0       0.14   10.9   0.0    2.1  2  Aminotran_MocR   Alanine-glyoxylate amino-transferase
      0.059   11.9   0.0      0.088   11.3   0.0    1.1  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   3.2e-24   1.4e-20      41     352 ..      71     394 ..      47     405 .. 0.74

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 3.2e-24
                    -BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSE...EEEEEBEET........ CS
  Aminotran_1_2  41 gpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsgge...vvryplyse........ 125
                      ++g  el   la  l+++ + +++++ ++ +++G++++   l+ l+ + +  +    +  ++   +++ ++++       +++++         
     CTQ30523.1  71 DGPQGKSELLALLANMLRDELGWEIEPQ-NIALTNGSQSAFFYLFNLF-AGRRADGTTRKVLFPLTPEYIGYADAGleeDLFVATRPNiellpegq 164
                    5556666666666666666666666666.6666666666666666666.33333333333333333333322222200112222222244444455 PP

                    TTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTT....EEEEE CS
  Aminotran_1_2 126 edfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepn....llivg 217
                     ++h+d+e+l+   +e      +t +i+v  p NPtG v+t eel kl +la+++++ l++D aY++   g       + + +++p     ++++ 
     CTQ30523.1 165 FKYHVDFEHLQV--TE------ETGMICVSRPTNPTGNVITDEELIKLDALANQHGVPLVIDNAYGVPFPG-------IIFSDARPLwnpnIVLCM 245
                    67899****988..77......899**********************************************.......444444333355599*** PP

                    ESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTS..SHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSE CS
  Aminotran_1_2 218 slsKafGlaGeRvGyilgnaavvsqlrklsrpfls..ssllqaavaaalsdallkqs....eleemrqrlqkrrkelrdeLaelglkvlasqsgmf 307
                    slsK +Gl+G R+G+i++n++++ ++ ++   +      +++a+  ++++ ++l +        +  qr+q+    +r  L e    + ++++++f
     CTQ30523.1 246 SLSK-LGLPGSRCGIIIANEKIITAISNMNGIISLapGGIGPAMMCEMIKRQDLLRLsetvIKPFYYQRVQETIAIIRRYLPEERCLIHKPEGAIF 340
                    ***9.9***********************999888*8899***********99997665544456779999999999999999999999999**** PP

                    EEEEETHH..CHHHHHHHHHHTCTEEEEEGGGGTS.........TTEEEEECTTS- CS
  Aminotran_1_2 308 lltdlsae..takelskkLleevgvyvtpgtsftv.........pgrlRitvAglt 352
                    l+  ++ +  + + l++ L ++ gv+++pg +f            ++ R+++   +
     CTQ30523.1 341 LWLWFKDLpiSTELLYQRLKKR-GVLMVPGDYFFPgldkpwphtHQCMRMNY-VPD 394
                    *******9*999999999****.*******9986555666666666666666.555 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.6e-06     0.007     125     169 ..     177     220 ..     166     224 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.6e-06
                      S-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEET CS
  Beta_elim_lyase 125 eekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgA 169
                       e++++i++   +n   G+v++ eel ++ a+a+++g+pl++D A
       CTQ30523.1 177 TEETGMICVSRPTNP-TGNVITDEELIKLDALANQHGVPLVIDNA 220
                      5799******99985.8**************************87 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.11   4.9e+02      62      93 ..      67     104 ..      35     129 .. 0.76
   2 ?   10.9   0.0   3.1e-05      0.14     174     377 ..     180     375 ..     168     418 .] 0.67

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.11
                     TTSSS-TT--HHHHHHHHHHT......TS-GGGEEE-S CS
  Aminotran_MocR  62 lrnyGGlaGlpelralfaell......dvkaenvlvqn 93 
                     l ny G +G  el al+a++l      +++++n+  +n
      CTQ30523.1  67 LCNYDGPQGKSELLALLANMLrdelgwEIEPQNIALTN 104
                     679****************9844333345555555555 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 3.1e-05
                     EEEEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTSS-BS.SSSS----HHHHHHHHT-TTSEEEEEESTTTS-TTSS-EEEEE-HH CS
  Aminotran_MocR 174 kGilavpkysnptGetiseevarrlaalkaaapdfrifaddayavhdlvaeedkdanivalardaGhpdrafvlastskitfaGaGvafvassed 268
                      G++ v + +nptG++i+ e   +l al        +  d+ay v            i + ar    p+  +   s sk+ + G+  +++ + e+
      CTQ30523.1 180 TGMICVSRPTNPTGNVITDEELIKLDALAN-QHGVPLVIDNAYGVPFP-------GIIFSDARPLWNPNIVL-CMSLSKLGLPGSRCGIIIANEK 265
                     5999****************9999999854.4568899*****99643.......34666677777777544.4589999999999999999999 PP

                     HHHHHHHHHHHC-S---HHHHHHHHHHHHHSTHHHHHHHHHHHHHHHH.HHHHHHHHH..HHHTTTSSEEE---SBSS-EEEEESS.S-HHH.HH CS
  Aminotran_MocR 269 niawlkkylGlqsiGpdkveqlrhvkflkdyeGlealmrdhaeliapk.feavlevle..aelggaevatwteprGGyfisldtld.gvakr.vv 358
                      i+ ++   G+ s+ p  +  +    ++k  +    l+r    +i+p  +++v+e++   ++   +e    ++p+G  f+ l   d +++ +   
      CTQ30523.1 266 IITAISNMNGIISLAPGGIGPAMMCEMIKRQD----LLRLSETVIKPFyYQRVQETIAiiRRYLPEERCLIHKPEGAIFLWLWFKDlPISTElLY 356
                     99999999999999999888887777777654....55666677777424667665431133335555666677777777665555333333134 PP

                     HHHHHCTEE---TTTTSST CS
  Aminotran_MocR 359 klaeeaGvsltaaGatypa 377
                     +  ++ Gv + +    +p 
      CTQ30523.1 357 QRLKKRGVLMVPGDYFFPG 375
                     4555666666665555555 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     2e-05     0.088     133     179 ..     175     224 ..     166     229 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2e-05
                      HCCTTEEEEEEESS-TTTT---.-..HHHHHHHHHHTT-EEEEEGTTTHT CS
  Cys_Met_Meta_PP 133 aikentklvylEtptnpllkvv.D..iekiaklakkagvlvvvDntfasp 179
                      +++e+t ++ +  ptnp+ +v+ D  + k+ +la ++gv++v+Dn++  p
       CTQ30523.1 175 QVTEETGMICVSRPTNPTGNVItDeeLIKLDALANQHGVPLVIDNAYGVP 224
                      57899*************998734224445578999*********99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3364.20
//
Query:       CTQ30524.1  [L=161]
Description: formate dehydrogenase-H, (4Fe-4S) ferredoxin subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-13   50.1  32.4    6.9e-06   26.6  10.8    3.2  3  Fer4_7    4Fe-4S dicluster domain
    6.1e-13   48.0  37.7    7.6e-08   31.9   1.2    5.7  6  Fer4      4Fe-4S binding domain
    9.1e-13   48.2  15.9    9.1e-13   48.2  15.9    1.9  2  Fer4_11   4Fe-4S dicluster domain
    1.2e-12   47.7  30.1      2e-06   27.9  12.4    2.5  2  Fer4_9    4Fe-4S dicluster domain
    1.6e-12   46.9  38.2      9e-06   25.6   2.3    4.8  4  Fer4_6    4Fe-4S binding domain
    2.5e-11   42.9  36.5    1.1e-05   25.2   2.3    4.3  4  Fer4_2    4Fe-4S binding domain
    2.5e-09   37.1  35.3    1.4e-06   28.3  12.0    3.2  3  Fer4_10   4Fe-4S dicluster domain
    3.2e-09   37.6  29.4     0.0087   17.0   1.1    4.4  4  Fer4_16   4Fe-4S double cluster binding domain
    4.7e-07   29.8  41.0    0.00059   20.1   3.4    5.4  4  Fer4_4    4Fe-4S binding domain
    1.3e-06   28.4  32.4     0.0025   17.9  11.8    3.5  2  Fer4_21   4Fe-4S dicluster domain
    1.1e-05   25.9  46.0     0.0093   16.8   6.0    4.5  4  Fer4_3    4Fe-4S binding domain
    2.1e-05   24.9  32.2     0.0004   20.8   9.4    3.3  2  Fer4_8    4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.024   15.2  35.0       0.12   13.0   2.8    4.3  6  Fer4_17   4Fe-4S dicluster domain
       0.04   14.5   1.9       0.04   14.5   1.9    4.7  2  Fer4_13   4Fe-4S single cluster domain of Ferredoxin I
       0.05   14.3   0.6       0.05   14.3   0.6    4.0  3  Fer4_15   4Fe-4S single cluster domain
      0.057   13.4   5.3          2    8.4   0.2    2.6  3  Fer4_5    4Fe-4S binding domain
      0.068   13.3  13.2       0.35   11.0   1.6    2.5  2  ETF_QO    Electron transfer flavoprotein-ubiquinone oxidoredu
       0.24   11.2  37.4      0.097   12.4   2.6    4.1  4  Fer4_20   Dihydroprymidine dehydrogenase domain II, 4Fe-4S cl


Domain annotation for each model (and alignments):
>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6  10.8   6.9e-09   6.9e-06       1      52 []      11      74 ..      11      76 .. 0.68
   2 !   26.4  14.1   7.7e-09   7.6e-06       1      52 []      88     138 ..      88     138 .. 0.80
   3 !   10.9   2.9   0.00053      0.53       1      19 [.     117     141 ..     117     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 6.9e-09
      Fer4_7  1 rCigCgaCvaaCpvkaieldeeenek.........gtekveid.pekClgCga..CvavCPtga 52
                rCigC+ C++aC v   + ++++  +          +++ +i+ ++ C +C+   C++vCP ga
  CTQ30524.1 11 RCIGCRTCEVACAVAHQQAQDVAALStnhfaprirVVKSGDIStAMACRQCEDapCASVCPQGA 74
                8***********86666666543333111222111336667764788****9999******997 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 7.7e-09
      Fer4_7   1 rCigCgaCvaaCpvkaieldeeenekgtekveidpekClgCga...CvavCPtga 52 
                 rCigC+ C++aCp++a++++  +++++    +++ + C +  +   Cva+CPt+a
  CTQ30524.1  88 RCIGCKSCMVACPYGAMTVTVMNQQAQ----ALKCDLCHHRAEgpaCVAACPTQA 138
                 8******************99866555....566666666554555*******97 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00053
      Fer4_7   1 rCigCg......aCvaaCpvkaiel 19 
                 +C  C+      aCvaaCp++a+++
  CTQ30524.1 117 KCDLCHhraegpACVAACPTQALRV 141
                 6888877777779*******99986 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   3.7   2.8e-05     0.028       4      18 ..       8      22 ..       5      22 .. 0.90
   2 ?    1.5   0.3       0.3     3e+02      10      17 ..      57      64 ..      56      64 .. 0.84
   3 !   12.2   0.5   0.00012      0.12      14      24 .]      66      76 ..      66      76 .. 0.95
   4 !   31.9   1.2   7.6e-11   7.6e-08       3      23 ..      84     104 ..      82     105 .. 0.92
   5 ?   -1.5   0.2       2.7   2.7e+03       7      11 ..     117     121 ..     116     122 .. 0.65
   6 !   11.5   0.9    0.0002       0.2      13      23 ..     129     139 ..     129     140 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.8e-05
                ETTTSSS-THHHHHS CS
        Fer4  4 deekCigCGaCvevC 18
                +  +CigC +C+ +C
  CTQ30524.1  8 NAQRCIGCRTCEVAC 22
                6679*********** PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.3
                S-THHHHH CS
        Fer4 10 gCGaCvev 17
                +C +C+++
  CTQ30524.1 57 ACRQCEDA 64
                7****986 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00012
                HHHHSTTTEEE CS
        Fer4 14 CvevCPvgAIt 24
                C++vCP gAI+
  CTQ30524.1 66 CASVCPQGAIQ 76
                *********95 PP

  == domain 4  score: 31.9 bits;  conditional E-value: 7.6e-11
                 EETTTSSS-THHHHHSTTTEE CS
        Fer4   3 ideekCigCGaCvevCPvgAI 23 
                 +d+ +CigC+ C+ +CP+gA 
  CTQ30524.1  84 VDQRRCIGCKSCMVACPYGAM 104
                 899*****************7 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 2.7
                 TSSS- CS
        Fer4   7 kCigC 11 
                 kC  C
  CTQ30524.1 117 KCDLC 121
                 56666 PP

  == domain 6  score: 11.5 bits;  conditional E-value: 0.0002
                 HHHHHSTTTEE CS
        Fer4  13 aCvevCPvgAI 23 
                 aCv +CP+ A+
  CTQ30524.1 129 ACVAACPTQAL 139
                 7*********8 PP

>> Fer4_11  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.7       1.9   1.8e+03      10      16 ..      15      21 ..       5      39 .. 0.56
   2 !   48.2  15.9   9.1e-16   9.1e-13       8      97 ..      56     141 ..      52     143 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.9
     Fer4_11 10 CrhClep 16
                Cr C+ +
  CTQ30524.1 15 CRTCEVA 21
                4444333 PP

  == domain 2  score: 48.2 bits;  conditional E-value: 9.1e-16
     Fer4_11   8 eqCrhCleppCvasapseaivkdeetGaVlldektkkeevrevveacPykivrkn..eetgkvekCdmcldrveaGllpacvescptgalnf 97 
                   Cr+C+++pC++++p++ai +d+   +  +d++++  ++++++ acPy ++ ++  +++ ++ kCd+c +r e    pacv +cpt+al++
  CTQ30524.1  56 MACRQCEDAPCASVCPQGAIQRDN--DVWWVDQRRCI-GCKSCMVACPYGAMTVTvmNQQAQALKCDLCHHRAE---GPACVAACPTQALRV 141
                 68******************9999..57788999996.***********987655115666788*********9...8**********9875 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   9.7   1.1e-08   1.1e-05       1      51 []      11      75 ..      11      75 .. 0.77
   2 !   27.9  12.4     2e-09     2e-06       1      50 [.      88     138 ..      88     139 .. 0.92

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.1e-08
      Fer4_9  1 kCtgCgaCveaCpagvvvedaaerkarlraase............eaCigCga..CveaCpkgai 51
                +C+gC++C+ aC   + + ++++    ++ a               aC +C++  C+ +Cp+gai
  CTQ30524.1 11 RCIGCRTCEVACAVAHQQAQDVAALSTNHFAPRirvvksgdistaMACRQCEDapCASVCPQGAI 75
                6***********66666555555555554444456666677999999****************98 PP

  == domain 2  score: 27.9 bits;  conditional E-value: 2e-09
      Fer4_9   1 kCtgCgaCveaCpagvvvedaaerkarlraaseeaCigCga......CveaCpkga 50 
                 +C+gC++C+ aCp+g+++    ++ a+       +C  C+       Cv+aCp++a
  CTQ30524.1  88 RCIGCKSCMVACPYGAMTVTVMNQQAQAL-----KCDLCHHraegpaCVAACPTQA 138
                 6****************999999998873.....6*******************97 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   1.6   3.4e-07   0.00034       5      21 ..       8      24 ..       5      30 .. 0.87
   2 !    9.7   5.1   0.00091       0.9       8      24 .]      57      75 ..      57      75 .. 0.93
   3 !   25.6   2.3     9e-09     9e-06       4      23 ..      84     103 ..      83     104 .. 0.94
   4 !    7.8   6.3    0.0037       3.7       9      24 .]     118     139 ..     113     139 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.4e-07
      Fer4_6  5 dpdkCigCgdCvrvCPe 21
                ++++CigC+ C+++C  
  CTQ30524.1  8 NAQRCIGCRTCEVACAV 24
                789************74 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00091
      Fer4_6  8 kCigCgd..CvrvCPegai 24
                +C +C+d  C++vCP gai
  CTQ30524.1 57 ACRQCEDapCASVCPQGAI 75
                6****999*******9998 PP

  == domain 3  score: 25.6 bits;  conditional E-value: 9e-09
      Fer4_6   4 idpdkCigCgdCvrvCPega 23 
                 +d+ +CigC  C+++CP+ga
  CTQ30524.1  84 VDQRRCIGCKSCMVACPYGA 103
                 8999**************98 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0037
      Fer4_6   9 CigCgd......CvrvCPegai 24 
                 C+ C        Cv++CP++a+
  CTQ30524.1 118 CDLCHHraegpaCVAACPTQAL 139
                 555533345557********97 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   3.7   5.9e-06    0.0059       5      20 ..       7      22 ..       5      24 .. 0.91
   2 !   10.0   4.7   0.00078      0.77       9      22 .]      57      72 ..      53      72 .. 0.91
   3 !   25.2   2.3   1.1e-08   1.1e-05       3      22 .]      82     101 ..      80     101 .. 0.92
   4 !    9.1   2.5    0.0015       1.5       8      22 .]     116     136 ..     111     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.9e-06
      Fer4_2  5 vdtdrCigCgaCvsaC 20
                ++++rCigC++C  aC
  CTQ30524.1  7 ANAQRCIGCRTCEVAC 22
                799************* PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00078
      Fer4_2  9 rCigCg..aCvsaCPa 22
                +C +C+  +C s+CP+
  CTQ30524.1 57 ACRQCEdaPCASVCPQ 72
                6****899*******6 PP

  == domain 3  score: 25.2 bits;  conditional E-value: 1.1e-08
      Fer4_2   3 vvvdtdrCigCgaCvsaCPa 22 
                  +vd +rCigC++C  aCP+
  CTQ30524.1  82 WWVDQRRCIGCKSCMVACPY 101
                 69*****************5 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.0015
      Fer4_2   8 drCigCg......aCvsaCPa 22 
                  +C  C       aCv aCP+
  CTQ30524.1 116 LKCDLCHhraegpACVAACPT 136
                 58999*6667789*******7 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2  15.9   0.00065      0.65       3      56 .]       6      71 ..       4      71 .. 0.80
   2 !    7.1   4.2    0.0061         6       7      22 ..      56      73 ..      50      81 .. 0.75
   3 !   28.3  12.0   1.4e-09   1.4e-06       3      56 .]      83     135 ..      81     135 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00065
     Fer4_10  3 vidddtCirCgkCvkaCPadl...........tsvgakgeaseeeavrkkvekCtgcg..aCveaCP 56
                + ++++Ci+C++C  aC a +           t++ a  ++  ++ +     +C +c+   C+++CP
  CTQ30524.1  6 IANAQRCIGCRTCEVAC-AVAhqqaqdvaalsTNHFAPRIRVVKSGDISTAMACRQCEdaPCASVCP 71
                67899************.4448******999655555555555555555999*****7779*****9 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0061
     Fer4_10  7 dtCirCg..kCvkaCPad 22
                  C +C+   C ++CP+ 
  CTQ30524.1 56 MACRQCEdaPCASVCPQG 73
                5799999999******93 PP

  == domain 3  score: 28.3 bits;  conditional E-value: 1.4e-09
     Fer4_10   3 vidddtCirCgkCvkaCPadltsvgakgeaseeeavrk.kvekCtgcg......aCveaCP 56 
                  +d+ +Ci+C+ C+ aCP+        g+ +   +++     kC+ c       aCv+aCP
  CTQ30524.1  83 WVDQRRCIGCKSCMVACPY--------GAMTVTVMNQQaQALKCDLCHhraegpACVAACP 135
                 6899***************........333333333333778888884455668******9 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.9    0.0018       1.8       1      15 [.      11      25 ..       4      42 .. 0.75
   2 !   17.0   1.1   8.7e-06    0.0087       2      21 ..      58      79 ..      57      87 .. 0.85
   3 !   15.3   6.2   2.9e-05     0.029       1      29 [.      88     117 ..      88     127 .. 0.78
   4 !    9.7   2.1    0.0017       1.7       7      28 ..     129     150 ..     121     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0018
     Fer4_16  1 rCgtCgkCaevCPtn 15
                rC++C+ C  +C ++
  CTQ30524.1 11 RCIGCRTCEVACAVA 25
                477777777777665 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 8.7e-06
     Fer4_16  2 CgtCgk..CaevCPtnaikekk 21
                C +C+   Ca+vCP++ai+ ++
  CTQ30524.1 58 CRQCEDapCASVCPQGAIQRDN 79
                ****9999***********994 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 2.9e-05
     Fer4_16   1 rCgtCgkCaevCPtnaikek.kekeieare 29 
                 rC++C+ C+ +CP +a++ +  +++++a +
  CTQ30524.1  88 RCIGCKSCMVACPYGAMTVTvMNQQAQALK 117
                 6****************9874444555544 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.0017
     Fer4_16   7 kCaevCPtnaikekkekeiear 28 
                 +C+ +CPt+a++    +e+ea 
  CTQ30524.1 129 ACVAACPTQALRVMVPAELEAL 150
                 7**********98766776655 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   3.8   2.2e-05     0.022       2      14 ..      10      22 ..       9      28 .. 0.92
   2 ?    4.9   5.2     0.046        46       4      17 .]      58      73 ..      53      73 .. 0.66
   3 !   20.1   3.4   5.9e-07   0.00059       3      17 .]      88     102 ..      86     104 .. 0.92
   4 ?    5.3   4.9     0.034        34       8      17 .]     128     137 ..     115     137 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.2e-05
      Fer4_4  2 erCigCgsCvaaC 14
                +rCigC+ C+ aC
  CTQ30524.1 10 QRCIGCRTCEVAC 22
                8************ PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.046
      Fer4_4  4 CigCgs..CvaaCPqg 17
                C +C    C ++CPqg
  CTQ30524.1 58 CRQCEDapCASVCPQG 73
                5555545677779986 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 5.9e-07
      Fer4_4   3 rCigCgsCvaaCPqg 17 
                 rCigC+sC+ aCP+g
  CTQ30524.1  88 RCIGCKSCMVACPYG 102
                 9************86 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.034
      Fer4_4   8 gsCvaaCPqg 17 
                 ++CvaaCP++
  CTQ30524.1 128 PACVAACPTQ 137
                 48******86 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7  12.6   2.6e-05     0.026       4      58 ..       8      76 ..       6      77 .. 0.67
   2 !   17.9  11.8   2.5e-06    0.0025       3      56 ..      84     138 ..      82     142 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.6e-05
     Fer4_21  4 dedkCigCgkCliaCedtshqaieidakt..vl..........kvv.edeCvGCn..lCssvCPvedcie 58
                + ++CigC  C +aC  +  qa +++a +  ++           +  +  C  C+   C+svCP +++i+
  CTQ30524.1  8 NAQRCIGCRTCEVACAVAHQQAQDVAALStnHFaprirvvksgDIStAMACRQCEdaPCASVCP-QGAIQ 76
                5689************887788754432211225555555544332256899997336******.69986 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 2.5e-06
     Fer4_21   3 idedkCigCgkCliaCedtshqaieidaktvlkvvedeCv...GCnlCssvCPvedc 56 
                 +d+ +CigC++C++aC+ ++++   + +++  ++  d C        C++ CP+ ++
  CTQ30524.1  84 VDQRRCIGCKSCMVACPYGAMTVTVM-NQQAQALKCDLCHhraEGPACVAACPT-QA 138
                 899**************877665555.45555555666641113457******7.54 PP

>> Fer4_3  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   5.5    0.0058       5.8       1      11 [.      12      22 ..      12      25 .. 0.93
   2 !    8.5   5.8    0.0044       4.4       1      15 []      58      74 ..      58      74 .. 0.90
   3 !   16.8   6.0   9.4e-06    0.0093       1      15 []      89     103 ..      89     103 .. 0.98
   4 !   11.1   4.8   0.00063      0.63       1      15 []     118     138 ..     118     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0058
      Fer4_3  1 CtgCgaCvevC 11
                C+gC++C+++C
  CTQ30524.1 12 CIGCRTCEVAC 22
                *********** PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0044
      Fer4_3  1 CtgCg..aCvevCPvgA 15
                C +C+  +C  vCP gA
  CTQ30524.1 58 CRQCEdaPCASVCPQGA 74
                88998778*******99 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 9.4e-06
      Fer4_3   1 CtgCgaCvevCPvgA 15 
                 C+gC  C+++CP+gA
  CTQ30524.1  89 CIGCKSCMVACPYGA 103
                 ****99********9 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 0.00063
      Fer4_3   1 CtgCg......aCvevCPvgA 15 
                 C+ C       aCv +CP+ A
  CTQ30524.1 118 CDLCHhraegpACVAACPTQA 138
                 9***77888999******866 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   9.4     4e-07    0.0004       2      64 ..       9      73 ..       8      74 .. 0.75
   2 ?    5.7  14.5      0.02        20       2      21 ..      86     105 ..      85     146 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4e-07
      Fer4_8  2 lekCieCgaCqsaCpvlrrtkkhlldargeaaedvqeeqvleeeealwsCttcga..CtevCpvg 64
                +++Ci+C  C+ aC v+++++++      ++ +   +  +  +  ++ +C +c+   C++vCp+g
  CTQ30524.1  9 AQRCIGCRTCEVACAVAHQQAQDVAALSTNHFAPRIRVVKSGDISTAMACRQCEDapCASVCPQG 73
                689*************99988555554444455233333333478899******99*******87 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.02
      Fer4_8   2 lekCieCgaCqsaCpvlrrt 21 
                  ++Ci+C  C+ aCp    t
  CTQ30524.1  86 QRRCIGCKSCMVACPYGAMT 105
                 589***********944333 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.2    0.0012       1.2      42      56 ..       8      22 ..       2      27 .. 0.87
   2 ?    8.4  14.1    0.0032       3.2       1      59 [.      11      73 ..      11      75 .. 0.71
   3 ?    9.2   1.9    0.0017       1.7       1      21 [.      57      79 ..      57      88 .. 0.81
   4 ?   13.0   2.8   0.00012      0.12      45      59 ..      88     102 ..      77     104 .. 0.84
   5 ?    3.2  13.5      0.14   1.4e+02       1      20 [.      88     107 ..      88     139 .. 0.66
   6 ?    0.5   2.2      0.93   9.2e+02       7      14 ..     129     136 ..     116     153 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0012
     Fer4_17 42 kaslCieCgeCerkC 56
                +a++Ci+C+ Ce +C
  CTQ30524.1  8 NAQRCIGCRTCEVAC 22
                7899********999 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0032
     Fer4_17  1 rCiqCgyClpeCpsyeaydnepkkllraaklglleeaeke..ekaslCieCge..CerkCPqg 59
                rCi+C+ C+ +C    +  ++ + l  +  + +++ ++    ++a  C +C+   C+++CPqg
  CTQ30524.1 11 RCIGCRTCEVACAVAHQQAQDVAALSTNHFAPRIRVVKSGdiSTAMACRQCEDapCASVCPQG 73
                7************988877766665555444344444444346888888887555******97 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0017
     Fer4_17  1 rCiqCgy..ClpeCpsyeaydne 21
                +C+qC+   C+ +Cp++++ +++
  CTQ30524.1 57 ACRQCEDapCASVCPQGAIQRDN 79
                5*****889******99887665 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 0.00012
     Fer4_17  45 lCieCgeCerkCPqg 59 
                 +Ci+C+ C  +CP+g
  CTQ30524.1  88 RCIGCKSCMVACPYG 102
                 788888888888886 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.14
     Fer4_17   1 rCiqCgyClpeCpsyeaydn 20 
                 rCi+C+ C+ +Cp+++ + +
  CTQ30524.1  88 RCIGCKSCMVACPYGAMTVT 107
                 57777777777777666444 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.93
     Fer4_17   7 yClpeCps 14 
                 +C+++Cp+
  CTQ30524.1 129 ACVAACPT 136
                 36666665 PP

>> Fer4_13  4Fe-4S single cluster domain of Ferredoxin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.9     4e-05      0.04       1      17 [.      84     100 ..      84     102 .. 0.96
   2 ?    1.8   2.3      0.37   3.7e+02      48      58 .]     131     141 ..     108     141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4e-05
     Fer4_13   1 VDrdtCiacgaCvelaP 17 
                 VD+ +Ci+c++C  ++P
  CTQ30524.1  84 VDQRRCIGCKSCMVACP 100
                 9***************9 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.37
     Fer4_13  48 adaCPvesIgv 58 
                 ++aCP+++ +v
  CTQ30524.1 131 VAACPTQALRV 141
                 57899998875 PP

>> Fer4_15  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1  10.8       1.4   1.4e+03       6      64 ..      10      75 ..       7      76 .. 0.59
   2 ?   14.3   0.6     5e-05      0.05       2      19 ..      83     100 ..      83     115 .. 0.92
   3 ?    2.6   1.2      0.23   2.3e+02      56      66 .]     131     141 ..     117     141 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.4
     Fer4_15  6 daCigcglCvaea.......pevfeldedglasvl....lddgeiaegevpddeeeaaqeAaraCPvdAI 64
                ++Cigc  C  ++       ++v  l  +++a       ++ g+  ++  +  + e+a   a++CP +AI
  CTQ30524.1 10 QRCIGCRTCEVACavahqqaQDVAALSTNHFA--PrirvVKSGD-ISTAMACRQCEDAP-CASVCPQGAI 75
                79***********5555555555555555555..0445444333.33344444444443.4789999998 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 5e-05
     Fer4_15   2 vvDrdaCigcglCvaeap 19 
                 +vD+ +Cigc  C+ ++p
  CTQ30524.1  83 WVDQRRCIGCKSCMVACP 100
                 69**************98 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.23
     Fer4_15  56 araCPvdAIrv 66 
                 ++aCP++A+rv
  CTQ30524.1 131 VAACPTQALRV 141
                 689*****987 PP

>> Fer4_5  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2     0.002         2      24      34 ..      66      76 ..      66      77 .. 0.92
   2 ?    7.0   0.1    0.0055       5.5      24      37 ..      95     108 ..      95     116 .. 0.89
   3 ?   -2.4   0.1         5     5e+03      24      36 ..     130     142 ..     130     143 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.002
      Fer4_5 24 CgWiCPfGalq 34
                C  +CP+Ga+q
  CTQ30524.1 66 CASVCPQGAIQ 76
                999*******9 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0055
      Fer4_5  24 CgWiCPfGalqell 37 
                 C  +CP+Ga++ ++
  CTQ30524.1  95 CMVACPYGAMTVTV 108
                 8889******9987 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 5
      Fer4_5  24 CgWiCPfGalqel 36 
                 C  +CP  al+ +
  CTQ30524.1 130 CVAACPTQALRVM 142
                 6668**8888765 PP

>> ETF_QO  Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.6   0.00035      0.35      66      84 ..       3      21 ..       1      28 [. 0.83
   2 ?    7.6   4.2    0.0042       4.2       9      93 ..      30     107 ..      22     115 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00035
                EEEEE-CCC--S--HHHHH CS
      ETF_QO 66 kklqinaqnCvhCktCdik 84
                + l  naq C+ C+tC++ 
  CTQ30524.1  3 QFLIANAQRCIGCRTCEVA 21
                55778***********985 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0042
                 HHHHTTT-B--SSS--SEEESSTTHHHHT.HHHHHS-THHHH-TTS-EEEEETTTTSSEEEEE-CCC--S--HHHHH-TT--EEE- CS
      ETF_QO   9 ssvflsgtnheedqpvhLklkdaevavkv.nlekyagpeqryCPagvyeivedeeakekklqinaqnCvhCktCdikdpsqniewv 93 
                 ++v++ +tnh   +     +k  ++++++ + +  ++p++ +CP g  +   ++   +    ++ + C+ Ck+C +  p+  ++ +
  CTQ30524.1  30 QDVAALSTNHFAPRIRV--VKSGDISTAMaCRQCEDAPCASVCPQGAIQ---RD---NDVWWVDQRRCIGCKSCMVACPYGAMTVT 107
                 55555556665443333..333333333303344467899999998643...22...4568999************9999887765 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.6   9.8e-05     0.097      18      63 ..       6      49 ..       1      55 [. 0.87
   2 ?    8.7   4.4    0.0014       1.4      18      39 ..      52      73 ..      45      79 .. 0.86
   3 ?    5.4   2.6     0.015        15      21      39 ..      86     102 ..      76     108 .. 0.84
   4 ?    5.4   3.1     0.015        15      14      39 ..     108     137 ..     101     154 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.8e-05
                HHHHTT----TT-HHHHCSTT---HHHHHHHHHTT-HHHHHHHHHH CS
     Fer4_20 18 leeAsRClqCkkapcvkgCPveidipefikkiaegnleeaakiike 63
                +++A+RC+ C  ++c+ +C v  +  + + ++++++++  ++++k+
  CTQ30524.1  6 IANAQRCIGC--RTCEVACAVAHQQAQDVAALSTNHFAPRIRVVKS 49
                789*******..89**********9999999999999888887765 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0014
                HHHHTT----TT-HHHHCSTT- CS
     Fer4_20 18 leeAsRClqCkkapcvkgCPve 39
                ++ A  C qC++apc + CP  
  CTQ30524.1 52 ISTAMACRQCEDAPCASVCPQG 73
                567899**************75 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.015
                 HTT----TT-HHHHCSTT- CS
     Fer4_20  21 AsRClqCkkapcvkgCPve 39 
                  +RC+ C  + c+ +CP  
  CTQ30524.1  86 QRRCIGC--KSCMVACPYG 102
                 68*****..789*****76 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.015
                 HHHHHHHHTT----T....T-HHHHCSTT- CS
     Fer4_20  14 eeealeeAsRClqCk....kapcvkgCPve 39 
                   + +++A +C  C+     + cv++CP++
  CTQ30524.1 108 VMNQQAQALKCDLCHhraeGPACVAACPTQ 137
                 455678999*****83222456******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1284.60
//
Query:       CTQ30525.1  [L=613]
Description: selenocysteinyl-tRNA-specific translation factor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-33  113.9   0.1    2.6e-32  111.9   0.1    1.8  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.8e-18   65.3   1.3      7e-18   64.0   1.3    1.8  1  SelB-wing_3  Elongation factor SelB, winged helix
    9.5e-15   54.6   3.4    9.5e-15   54.6   3.4    3.1  4  SelB-wing_2  Elongation factor SelB, winged helix
    3.7e-08   33.6   0.1    9.1e-08   32.4   0.1    1.7  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    4.2e-06   26.8   0.0    9.1e-06   25.7   0.0    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.019   14.8   0.0      0.051   13.5   0.0    1.7  1  GTP_EFTU_D4  Elongation factor Tu domain 4
      0.028   14.2   0.0        8.3    6.2   0.0    2.3  2  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
      0.039   13.4   0.0      0.074   12.5   0.0    1.5  1  SRPRB        Signal recognition particle receptor beta subuni
       0.13   12.5   0.0       0.62   10.4   0.0    2.2  2  eIF2_C       Initiation factor eIF2 gamma, C terminal


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.1   1.3e-35   2.6e-32       5     191 ..       2     164 ..       1     167 [. 0.92

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 1.3e-35
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEET CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvda 103
                  i+++ghvDhGKtTL+ +++   g       ++      D+l+eE++rg+Ti+   ++   + + + + +iD PGH++F +++ +g+  +D a+lvv++
  CTQ30525.1   2 IIATAGHVDHGKTTLLQAIT---G-------VN-----ADRLPEEKARGMTIDLGYAYWP-QPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVAC 84 
                 5899***************9...2.......22.....599*******************.9************************************* PP

                 TTBSTHHHHHHHHHHHHTTTE.EEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHH CS
    GTP_EFTU 104 veGvepqteevlrlalkegvp.iivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvel 191
                 ++Gv++qt+e+l +++  g p + v+++K Dr+  a++ e++ ev+q+l        + g+ +   v +++++a ++ g+ +l + l +l
  CTQ30525.1  85 DDGVMAQTREHLAILQLTGKPtLTVALTKTDRVaAARVAEVQAEVEQTL-------GELGFGA---VAFFPTAAAENIGIAELRSHLLQL 164
                 *********************9***********999**********999.......4556664...899999***999999998887765 PP

>> SelB-wing_3  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   1.3   3.5e-21     7e-18       6      47 .]     564     606 ..     559     606 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 3.5e-21
                  T.S-BBHHHHHHHHT--HHHHHHHHHHHHHCTSEEEETTEEEE CS
  SelB-wing_3   6 e.geitaaefRdllgtSRKyaiplLEyfDrigvTrRvgDkRvl 47 
                    g+  aa+fRd l+++RK ai++LEyfDrig+TrR+g++++l
   CTQ30525.1 564 LrGSTCAADFRDTLNVGRKLAIQILEYFDRIGFTRRRGNDHIL 606
                  5577779**********************************97 PP

>> SelB-wing_2  Elongation factor SelB, winged helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.1   8.1e+03      36      55 ..      77      96 ..      77      97 .. 0.85
   2 ?   -3.1   0.2       4.8   9.6e+03      20      30 ..     155     170 ..     152     182 .. 0.55
   3 !   54.6   3.4   4.8e-18   9.5e-15       1      57 []     425     481 ..     425     481 .. 0.98
   4 ?   -1.1   0.1       1.1   2.2e+03      30      48 ..     519     537 ..     511     539 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.1
                 HHHHHHHHHTTSEEE-SSEE CS
  SelB-wing_2 36 qallealvargilavegdwv 55
                 +all  ++++g +a++++ +
   CTQ30525.1 77 HALLVVACDDGVMAQTREHL 96
                 588999999******99876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.8
                  HHHHHHCS.....SSS CS
  SelB-wing_2  20 eeLrsrla.....prl 30 
                  +eLrs l+     pr 
   CTQ30525.1 155 AELRSHLLqlaerPRP 170
                  7999986524433344 PP

  == domain 3  score: 54.6 bits;  conditional E-value: 4.8e-18
                  HHHHHHHHHH-TTS--EEHHHHHHHCSSSS-HCCHHHHHHHHHHTTSEEE-SSEEEE CS
  SelB-wing_2   1 lavLaeYHrenPlrpGmskeeLrsrlaprlpaklfqallealvargilavegdwvhL 57 
                  l++La+YH+++ ++pG ++e+Lr++++p  +++l+  l+e++ ++g ++++ +w+hL
   CTQ30525.1 425 LDALARYHEQHRDEPGPGRERLRRIALPMEDEALVLLLIEQMRESGLVHSHHGWLHL 481
                  689*****************************************************9 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.1
                  S-HCCHHHHHHHHHHTTSE CS
  SelB-wing_2  30 lpaklfqallealvargil 48 
                  +++ l+ a+l +++++g +
   CTQ30525.1 519 VEESLMRAVLRQAAQQGMI 537
                  56889999****9999977 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   4.6e-11   9.1e-08       1      73 [.     189     256 ..     189     257 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 4.6e-11
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  G v++g+  sG+++ Gd++++   +++      r+++l++ ++ +++a ag+++ +++ ++  ++a+ +Gd l
   CTQ30525.1 189 GLVVTGTALSGEVRIGDTLWL--TGVNT---PMRVRGLHAQNQAVEQAHAGQRIALNIVGDAQKEAVHRGDWL 256
                  679******************..55533...4***************************************98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   4.6e-09   9.1e-06       2     111 ..       3     109 ..       2     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 4.6e-09
                 EEEEESTTSSHHHHHHHHHTS...TEEESSSTTSSSSEEEEEEE.ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge...kaivsdkpgtTrdinegrvk.lkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldee 96 
                 +a +G+   GK+tL++a+tg    +   ++  g T+d  ++ +   +g+ + ++D+pG  e     k l++ ++ +   d++llvv +  +++ ++ +e
  CTQ30525.1   3 IATAGHVDHGKTTLLQAITGVnadRLPEEKARGMTIDLGYAYWPqPDGRVLGFIDVPG-HE-----KFLSNMLAGVGGIDHALLVVACD-DGVMAQTRE 94 
                 7889***************9533466789999*********998556699********.44.....55666666677799999999988.556666677 PP

                 HHHHHHHTTSEEEEE CS
    MMR_HSR1  97 leelleeakkplilv 111
                   ++l+ ++kp++ v
  CTQ30525.1  95 HLAILQLTGKPTLTV 109
                 777776678886553 PP

>> GTP_EFTU_D4  Elongation factor Tu domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.5e-05     0.051      19      85 ..     191     256 ..     179     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-05
                  EEEEEEEEEEEEETT-EEEETTE.EEEEEEEEEETTEEESEEETT-EEEEEEESS-TTTS--TT-EE CS
  GTP_EFTU_D4  19 aivGvevlgGvikpgvklikedGrevGeilqiqdkgkkleeakaGqevaisiegkivGrqikegdil 85 
                  ++ G + l+G ++ g +l  +  ++  +++ ++ +++++e+a+aGq++a+ i g+     ++ gd l
   CTQ30525.1 191 VVTG-TALSGEVRIGDTLWLTGVNTPMRVRGLHAQNQAVEQAHAGQRIALNIVGDAQKEAVHRGDWL 256
                  4556.77889999999998876677778999************************999999999976 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0059        12       6      23 ..       5      22 ..       1      41 [. 0.86
   2 ?    6.2   0.0    0.0041       8.3      86     141 ..     100     161 ..      50     163 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0059
   PduV-EutP  6 liGkvgsGKttLtqalkg 23
                  G+v+ GKttL qa++g
  CTQ30525.1  5 TAGHVDHGKTTLLQAITG 22
                5699***********987 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0041
   PduV-EutP  86 svfnkeviGi.itkidlaedeeniea....veelLksaGaeki..fevsavekegieellkyl 141
                 ++  k+++ + +tk+d +   +++      ve++L + G   +  f + a e++gi el+++l
  CTQ30525.1 100 QLTGKPTLTVaLTKTDRV-AAARVAEvqaeVEQTLGELGFGAVafFPTAAAENIGIAELRSHL 161
                 445577777646999987.44444430112567777766554444**************9887 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.7e-05     0.074       8      69 ..       5      71 ..       1     137 [. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.7e-05
                EE-STTSSHHHHHHHHHHS......S---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHH CS
       SRPRB  8 lvGlsdsGKTslftrLttd......svkktvtSqessaalkvksekgskltliDfPGheklrqkllek 69
                 +G  d GKT+l++ +t        + k   + ++   a+   + +g  l +iD+PGhek+ +++l  
  CTQ30525.1  5 TAGHVDHGKTTLLQAITGVnadrlpEEKARGMTIDLGYAYW-PQPDGRVLGFIDVPGHEKFLSNMLAG 71
                5899**********999764545443344444444444444.58899**************9988876 PP

>> eIF2_C  Initiation factor eIF2 gamma, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       6.9   1.4e+04      18      35 ..     223     241 ..     217     246 .. 0.64
   2 ?   10.4   0.0   0.00031      0.62      22      82 ..     275     334 ..     265     338 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6.9
                 SCCC.-----TTEEEEEEE CS
      eIF2_C  18 eekk.veklkkkEvLmlni 35 
                  +++ ve+ + ++ + lni
  CTQ30525.1 223 AQNQaVEQAHAGQRIALNI 241
                 4433477777777777776 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00031
                 -----TTEEEEEEETTEEEEEEEEEEESSEEEEEEEEEEE-STTEEEEEEEEETTSEEEEE CS
      eIF2_C  22 veklkkkEvLmlniGsastggvvtsvkkdeakvkLkkPvcaekgekialsRrvekrWrLiG 82 
                  ++l++ ++L ++ ++++  g+v+ +++++a++ L +P+    +++++l R +++r  L G
  CTQ30525.1 275 HTPLSQWQPLHIHHAASHITGRVSLLEGNLAELVLDTPLWLADNDRLVL-RDISARLTLAG 334
                 57899999**************************************998.88888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.22s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4696.68
//
Query:       CTQ30526.1  [L=462]
Description: selenocysteine synthase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.3e-176  587.1   0.0   1.5e-176  586.9   0.0    1.0  1  SelA            L-seryl-tRNA selenium transferase
    3.3e-10   40.0   1.5    3.3e-10   40.0   1.5    3.6  3  Se-cys_synth_N  Selenocysteine synthase N terminal
     0.0023   17.0   1.2     0.0037   16.3   0.1    1.8  2  Aminotran_5     Aminotransferase class-V
  ------ inclusion threshold ------
       0.51   10.9   3.8         19    5.9   0.5    3.0  2  PKS_DE          Polyketide synthase dimerisation element doma


Domain annotation for each model (and alignments):
>> SelA  L-seryl-tRNA selenium transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  586.9   0.0  3.3e-180  1.5e-176       1     366 [.      83     450 ..      83     451 .. 0.99

  Alignments for each domain:
  == domain 1  score: 586.9 bits;  conditional E-value: 3.3e-180
                 EEEESS-SS-TTTTSS---HHHHHHHHHHHHSEBSTTEETTTTEE--STHHHHHHHHHHHT-SEEEEES-HHHHHHHHHHHHHBTSEEEEETTSGTEET CS
        SelA   1 vinltGvvlhtnLGrallaeeaveavleaarkysnleydleegkrgsrdalveellkeltgaedalvvnnnaaavllvLntlaagkeviisrGeLveiG 99 
                 v+nltG+vlhtnLGra++ae aveav++a+r +++leydl+++ rg+rd+++++ll+++tgaeda++vnnnaaavll+L+++a+g+ev++srGeLveiG
  CTQ30526.1  83 VFNLTGTVLHTNLGRAIQAESAVEAVASAMRAPVTLEYDLDDAGRGHRDRAIADLLCQITGAEDACIVNNNAAAVLLMLAATASGREVVVSRGELVEIG 181
                 89************************************************************************************************* PP

                 TTEEHHHHHHHHTBEEEEESBSSB--HHHHHHT--TTEEEEEEE---SEEEEES-B---HHHHHHHHHHHT--EEEEEES-B-S-GGGGT-----BHHH CS
        SelA 100 GsfriPdvmkkaGvkLvevGttnkthlkDyekainentalllkvhtsnyrieGftkevelaeLvelgkekglpvleDlGsGllvdlseyglskePtvqe 198
                 G+friPdvm++aG++L+evGttn+th+kDy++a+n+ntall+kvhtsny+ieGftk+v++aeL+++g+e ++pv+ DlGsG+lvdls+ygl+keP+ qe
  CTQ30526.1 182 GAFRIPDVMRQAGCQLHEVGTTNRTHAKDYRQAVNDNTALLMKVHTSNYSIEGFTKAVDEAELAAIGRELDVPVVADLGSGSLVDLSQYGLPKEPMPQE 280
                 *************************************************************************************************** PP

                 HHHTT-SEEEEETTSTT-SSS-EEEEE-HHHHHHHHHSTHHHHTB--HHHHHHHHHHHHHHH..TT-GGGSHHHHHHH--HHHHHHHHHHHHHHHTTST CS
        SelA 199 alaeGvdlvsfsGDkllGgpqaGiivGkkelieklkknplkraLrvDkltlaaleatlrlyldpeklaeklptlrlltqkleelrakaerlqkelkeal 297
                 ++a+Gv+lvsfsGDkllGgpqaGiivGk+ li++l+++plkraLr Dk+tlaaleatlrly +pe l+eklptlrllt+++ee+r+ aerlq+ l++++
  CTQ30526.1 281 MIAAGVSLVSFSGDKLLGGPQAGIIVGKRALIAQLQSHPLKRALRADKMTLAALEATLRLYQHPEALREKLPTLRLLTRPAEEIRRLAERLQPDLAAHY 379
                 **************************************************************************************************9 PP

                 T..EEEEEEEEEE-TCSSS-SS--EEEEEEEEEESSS...-HHHHHHHHHTSSS-EEEEEETTEEEEEGGGS CS
        SelA 298 gselevkvvkslsqvGsGslPveelpsaaltiaeeka...kleaLeerlraleepiigrleddklvlDlrtl 366
                 + +++v+v +++sq+GsGslPv++lpsaalt+++++    +leaL++r+ral+ p+igr++d++l+lDlr+l
  CTQ30526.1 380 A-DFAVSVGACQSQIGSGSLPVDRLPSAALTFTPHDGrgsRLEALAARWRALPCPVIGRIYDGRLWLDLRCL 450
                 9.9*******************************99888899*****************************9 PP

>> Se-cys_synth_N  Selenocysteine synthase N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   1.5   7.4e-14   3.3e-10       3      40 .]      11      48 ..       9      48 .. 0.98
   2 ?   -0.5   0.0      0.33   1.5e+03       9      34 ..     295     326 ..     294     326 .. 0.71
   3 ?   -0.4   0.5      0.31   1.4e+03       9      24 ..     355     372 ..     355     378 .. 0.59

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 7.4e-14
  Se-cys_synth_N  3 sLPsVDaLLtalearallaalpRalvrdavrafLdrcR 40
                    +LP++D+LL++++  +lla+++++ v++ +r++Ld++R
      CTQ30526.1 11 RLPAIDRLLRDPAFSPLLAQHGHSQVVAQLRQMLDEAR 48
                    8************************************9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.33
  Se-cys_synth_N   9 aLLtal......earallaalpRalvrdavra 34 
                     +LL  +        ral+a+l    ++ a+ra
      CTQ30526.1 295 KLLGGPqagiivGKRALIAQLQSHPLKRALRA 326
                     55555555555556899999999999999987 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.31
  Se-cys_synth_N   9 aLLtal..earallaalp 24 
                     +LLt +  e+r l+++l 
      CTQ30526.1 355 RLLTRPaeEIRRLAERLQ 372
                     578888886666666553 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1         1   4.6e+03      36      54 ..      35      53 ..      30      57 .. 0.77
   2 !   16.3   0.1   8.2e-07    0.0037      75     223 ..     153     317 ..     148     333 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHHHHHHH CS
  Aminotran_5 36 hlgkeatkaveearekvae 54
                 +  +++ ++++eare++++
   CTQ30526.1 35 QVVAQLRQMLDEAREQIRQ 53
                 5667888999999999886 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 8.2e-07
                  HHHHHHCCCC.-TTTSEEEEET...TSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBET..TTTEB--H..HHHHHH CS
  Aminotran_5  75 nlvalslars.lkpgdeivvte...aehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsn..vtGtiqpv..eeigkl 164
                  n++a  l+ +    g+e+vv++   +e+ +++  + +++++ g +++ +  +++     +++++++n++t+l++  h+sn  + G  + v  +e++++
   CTQ30526.1 153 NAAAVLLMLAaTASGREVVVSRgelVEIGGAF-RIPDVMRQAGCQLHEVGTTNRT--HAKDYRQAVNDNTALLMKVHTSNysIEGFTKAVdeAELAAI 247
                  55555555555889999999983334566666.8999999******999885555..556*******************9445699665511578888 PP

                  HHHTT-EEE........EE-TT.TTTT..S---HHHHTESEEEEETTTTTSSTT-EEEEEEHHHHHTS.. CS
  Aminotran_5 165 akkkgalvl........vDaaq.avgh..ipidvkklgvDflafsghKllgPtGiGvlyvrkelleklep 223
                   ++ ++ v+        vD +q ++++  +p ++ + gv +++fsg Kllg +  G+++++++l+ +l+ 
   CTQ30526.1 248 GRELDVPVVadlgsgslVDLSQyGLPKepMPQEMIAAGVSLVSFSGDKLLGGPQAGIIVGKRALIAQLQS 317
                  8888888771111111155555335552356689999**************999***********99953 PP

>> PKS_DE  Polyketide synthase dimerisation element domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2     0.011        49       6      25 ..     237     256 ..     233     268 .. 0.82
   2 ?    5.9   0.5    0.0042        19      13      35 ..     331     354 ..     327     357 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.011
      PKS_DE   6 aaVereDlaaLaatLgldad 25 
                 +aV+++ laa  ++L+++  
  CTQ30526.1 237 KAVDEAELAAIGRELDVPVV 256
                 79**************9643 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0042
      PKS_DE  13 laaLaatLgl.dadasLsavLPaL 35 
                 laaL+atL+l ++ ++L++ LP L
  CTQ30526.1 331 LAALEATLRLyQHPEALREKLPTL 354
                 89********844557******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3327.48
//
Query:       CTQ30527.1  [L=202]
Description: putative glutathione S-transferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-17   63.6   0.0    2.6e-17   63.0   0.0    1.4  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    6.7e-11   42.3   0.0    1.1e-10   41.6   0.0    1.3  1  GST_N_2   Glutathione S-transferase, N-terminal domain
      2e-07   31.2   0.0      8e-07   29.3   0.0    1.9  2  GST_N     Glutathione S-transferase, N-terminal domain
      3e-07   30.6   0.0      4e-07   30.2   0.0    1.2  1  GST_C     Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   5.9e-21   2.6e-17       1      69 [.       3      72 ..       3      78 .. 0.94

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 5.9e-21
                EES-TTSHHHHHHHHHHHHHT--EEEE---TTTTHHHHHHH-TT--SSEEE.TTS-EEESHHHHHHHHHH CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpvevvevtpgehdeellaknplgkvPvLe.ddgealtdSlaIidyLee 69
                L+g+++Sp++r++ ++L ek++p+e+v+ +p + ++ + ++nplgkvP+L+ ddge  +dS +I++yLe 
  CTQ30527.1  3 LIGSYTSPFVRKISVILLEKRIPFEFVNESPYSESNGVARYNPLGKVPALVtDDGECWFDSPVIAQYLEL 72
                899***********************************************7467**************95 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   2.5e-14   1.1e-10       2      68 ..       9      71 ..       8      72 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 2.5e-14
                -HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEEEESHHHHHHHHH CS
     GST_N_2  2 CPwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqvineSseIlryle 68
                +P+++++ + l +k+++++  +v  ++ +++ s  + r+np+g+VP+L+++dg    +S +I++yle
  CTQ30527.1  9 SPFVRKISVILLEKRIPFE--FV--NESPYSESNGVARYNPLGKVPALVTDDGECWFDSPVIAQYLE 71
                9******************..67..678999999*******************************97 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.8e-10     8e-07       9      74 ..       7      70 ..       1      71 [. 0.88
   2 ?   -1.2   0.0      0.59   2.6e+03      24      49 ..     101     127 ..      85     132 .. 0.67

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 1.8e-10
                STSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET.TEEEESHHHHHHHH CS
       GST_N  9 rgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn.gkkltESraIleYi 74
                 +sp++ +i + l +k +++e+v++ + ++  +s   ++ nplgkvPaL+++ g + + S +I++Y+
  CTQ30527.1  7 YTSPFVRKISVILLEKRIPFEFVNESP-YS--ESNGVARYNPLGKVPALVTDdGECWFDSPVIAQYL 70
                567899999*****************8.33..45799*************999*************9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.59
                 TT-EEEEEEECSTTTCGGC.HHHHHHC CS
       GST_N  24 kgveyevvpldfeageeks.pellkln 49 
                  ++    v+++   g+++s +ell+ +
  CTQ30527.1 101 MEAAQALVREKARPGAQQSeQELLRQR 127
                 455555677777888888889998876 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0     9e-11     4e-07       3      92 ..      98     191 ..      76     192 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 9e-11
                 HHHHHHHHHHHSTTH....HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTT.TTTSHHHHHHHHHHHTS CS
       GST_C   3 dlisqilllfyvkae....ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafg.qekfpnlkawlerimar 92 
                 d +++++ +++ +++    +++e++++ ++ekva+ l++le+  + ++ l Gd++ lA i  ++++ +l+ +++a+g ++  p l + ++ +++r
  CTQ30527.1  98 DGVMEAAQALVREKArpgaQQSEQELLRQREKVARGLDRLEACAA-DGTLRGDEVNLATISTACAIAYLNFRRVAPGwCATRPQLVKLVDALFQR 191
                 5566666666666668888999***********************.********************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       560  (0.0312343); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1512.22
//
Query:       CTQ30528.1  [L=41]
Description: hypothetical protein CH1034_360041 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0055   16.6   0.0     0.0055   16.6   0.0    1.0  1  HlyD      HlyD membrane-fusion protein of T1SS
  ------ inclusion threshold ------
      0.067   13.4   0.0      0.067   13.4   0.0    1.0  1  TetR_C_6  BetI-type transcriptional repressor, C-terminal


Domain annotation for each model (and alignments):
>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   6.1e-07    0.0055      51      80 .]      10      39 ..       2      39 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.1e-07
                EEEEEEEEEEEETTEEEESSSS-TTEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD 51 rvpvrvvvekaqgpyyplriglkagalvrl 80
                ++p+++++++a ++++++++++++++l+r+
  CTQ30528.1 10 ALPDGIYAQVALYSDHFTHVSVMRKVLLRM 39
                6899***********************997 PP

>> TetR_C_6  BetI-type transcriptional repressor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.4e-06     0.067      77     106 ..       6      36 ..       2      41 .] 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.4e-06
                 HHHHHHHHHHHHHHHHTCTTCH.HHHHHHHH CS
    TetR_C_6  77 erlaAlidGLwlraalapeeld.aeraralv 106
                 ++l+Al dG++ ++al+ ++++    +r+++
  CTQ30528.1   6 QGLSALPDGIYAQVALYSDHFThVSVMRKVL 36 
                 689*****************99556666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       164  (0.00914719); expected 358.6 (0.02)
Passed bias filter:                      131  (0.0073066); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 338.14
//
Query:       CTQ30529.1  [L=635]
Description: fused mannitol-specific PTS enzymes: IIA components; IIB components; IIC components [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-33  115.0   0.0    4.1e-33  114.3   0.0    1.3  1  PTS_EIIA_2    Phosphoenolpyruvate-dependent sugar phosphotran
      2e-21   76.3  37.2    2.3e-21   76.2  32.0    3.2  2  PTS_EIIC      Phosphotransferase system, EIIC
    7.2e-10   39.4   0.0    2.1e-09   37.9   0.0    1.8  1  PTS_IIB       PTS system, Lactose/Cellobiose specific IIB sub
  ------ inclusion threshold ------
        3.5    7.5   8.1        5.7    6.8   0.6    2.8  2  DUF2975       Protein of unknown function (DUF2975)


Domain annotation for each model (and alignments):
>> PTS_EIIA_2  Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.0   9.2e-37   4.1e-33       5     143 ..     498     635 .]     495     635 .] 0.96

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 9.2e-37
                 CCGEEEEC--SSHHHHHHHHHHHHHHTTSB-CH..HHHHHHHHHHHH-STTETCEE----SCCC...BSS-EEEEEEEEEEEE-T-GCC-CEEEEEEEE CS
  PTS_EIIA_2   5 kelifldleakskeeaieqlaqklaeagavkpaeeyleallerekksstgigngvAiPHarlea...vkkpaiavlklkepvdfeasdgkpvkliflla 100
                  ++ifl  +a++keeai++++++l++ g+v+p+  y++a+l rek+ st++g+ +A+PH+++ea   v+k+++++++ +e+v f++++++ ++l++ +a
  CTQ30529.1 498 ADNIFLGRKAATKEEAIRFAGEQLVKGGYVEPE--YVQAMLDREKLTSTYLGESIAVPHGTIEAkdrVLKTGVVFCQYPEGVRFGEEEDEVARLVIGIA 594
                 689******************************..**************************887788******************88899999999999 PP

                 -SSCHH.HHHHHHHHHHHHCSCCHHHHHHC--SHHHHHHHHCH CS
  PTS_EIIA_2 101 lpekdaehlkilaqLaellkdeefvekLrkakseeeilellee 143
                 + +++  h++++ +L++ l+de ++e+L+k++s +e+l+ll++
  CTQ30529.1 595 ARNNE--HIQVITSLTNALDDETVIERLAKTTSVDEVLALLNK 635
                 99998..*********************************985 PP

>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2  32.0   5.2e-25   2.3e-21       1     324 []      17     277 ..      17     277 .. 0.93
   2 ?   -1.3   0.2       0.2   8.8e+02      53     266 ..     310     323 ..     279     348 .. 0.52

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 5.2e-25
    PTS_EIIC   1 sdgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvl 99 
                 s+++m+ i ++ia+Gi+++l++                t++ +++++ k +g ++ ++Lpll++++ ++ +  ++ gv+g+  ++g+++          
  CTQ30529.1  17 SNMVMPNIGAFIAWGIITALFI---------------PTGWLPNETLAKLVGPMITYLLPLLIGYTGGKLVGGERGGVVGAITTMGVIV---------- 90 
                 689*******************...............47888899**************************668888887777777777.......... PP

    PTS_EIIC 100 llaagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffv...gkrfvpiittlvvllvvglvllliwpaiqgglnalg... 192
                                  ++++ +++g++i+g l +y+++kf++++  k+ ++++++v   +  ++ +i +++++l +g+++ ++++++  g+n  +   
  CTQ30529.1  91 -----------------GADMPMFLGSMIAGPLGGYCIKKFDNWVDGKIKSGFEMLVnnfSAGIIGMILAILAFLGIGPAVEVLSKILAAGVNFMVahd 172
                 .................7899************************************88888999999999***********************98888 PP

    PTS_EIIC 193 ll....lggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkl 287
                 +l    ++ ++  + +l  ++ ++++ p+G+++   ++  +++                              + ++pg++ ++++a++++ +   k++
  CTQ30529.1 173 MLplasIFVEPAKILFLNNAINHGIFSPLGIQQSHELGKSIFF-----------------------------LIEANPGPGMGVLLAYMFFGRGSAKQS 242
                 557778999999*****************************88.............................4779*********************** PP

    PTS_EIIC 288 lgsaaltpflfGItepleFgfpfvlnll.lfipallag 324
                 +g+aa+++fl+GI+e++   fp+vl+++ l+++++l+g
  CTQ30529.1 243 AGGAAIIHFLGGIHEIY---FPYVLMNPrLILAVILGG 277
                 *****************...********9999999887 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.2
    PTS_EIIC  53 navfanLpllfaigiayglakggkgvaglagligllafnllaaisvlllaagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPes 151
                 +a fan++ ++a                                                                                       
  CTQ30529.1 310 GAYFANIAAIIA--------------------------------------------------------------------------------------- 321
                 222222222222....................................................................................... PP

    PTS_EIIC 152 lpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglllggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkea 250
                                                                                                                    
  CTQ30529.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

    PTS_EIIC 251 ahiltgefvsvmfGgp 266
                               ++
  CTQ30529.1 322 --------------AM 323
                 ..............22 PP

>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   4.7e-13   2.1e-09       1      79 [.     379     453 ..     379     458 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 4.7e-13
                 EEEEEESSSHHHHHHHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEESSGGCTHHHHTTSEEEEECTTHHH CS
     PTS_IIB   1 killaCgaGmatSlmaaeklekaakelgieaegeagveleaeeiaddaDlvllapqvrvkdlarfagkpvavinikdal 79 
                 ki++aC aGm++S+m a  l+k ++++g+  ++++++    ++ + d+Dlv+++ +++ + + + ++  ++ i+++++l
  CTQ30529.1 379 KIIVACDAGMGSSAMGAGVLRKKVQDAGLSNISVTNS--AINNLPPDVDLVITHRDLTERAMRQVPQ--AQHISLTNFL 453
                 8***************************999999999..899999*************655555555..8899999988 PP

>> DUF2975  Protein of unknown function (DUF2975)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   1.6     0.015        67      92     122 ..     136     166 ..     125     172 .. 0.85
   2 ?    6.8   0.6    0.0013       5.7      97     128 ..     313     344 ..     264     345 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.015
     DUF2975  92 vvllllgvafaslvigllvlvlaellaeAvk 122
                  +++++++++a l+ig  v vl+++la +v+
  CTQ30529.1 136 GIIGMILAILAFLGIGPAVEVLSKILAAGVN 166
                 47899999999*****************997 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0013
     DUF2975  97 lgvafaslvigllvlvlaellaeAvklkeEnd 128
                 + ++ a +++ ++++v++++l + +k+keE d
  CTQ30529.1 313 FANIAAIIAAMAVSFVVSAVLLKTSKVKEEDD 344
                 333444555667889***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 4280.77
//
Query:       CTQ30530.1  [L=382]
Description: mannitol-1-phosphate dehydrogenase, NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-69  232.9   0.0    7.1e-69  232.0   0.0    1.4  1  Mannitol_dh_C    Mannitol dehydrogenase C-terminal domain
    4.2e-27   95.2   0.1    8.3e-27   94.2   0.1    1.5  1  Mannitol_dh      Mannitol dehydrogenase Rossmann domain
     0.0088   15.9   0.2      0.025   14.4   0.2    1.8  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
  ------ inclusion threshold ------
      0.042   14.1   0.4       0.11   12.8   0.4    1.8  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> Mannitol_dh_C  Mannitol dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.0   0.0   1.6e-72   7.1e-69       2     243 ..     149     371 ..     148     374 .. 0.97

  Alignments for each domain:
  == domain 1  score: 232.0 bits;  conditional E-value: 1.6e-72
  Mannitol_dh_C   2 svgfpntmVDRIvpaatddelakleeelgveDplavtvEpFiqWviednfvkgrpelelvgvelvedvepyeerKlriLNggHaalaylgalaGyq 97 
                    ++gf++++VDRIvp            + +++Dpl+vtvE+F++W+++++++kg +   + g+el++++++++erKl++LN+gHa++aylg+laG+q
     CTQ30530.1 149 HIGFVDSAVDRIVPP----------SASATHDPLEVTVETFSEWIVDKTQFKG-ALPTIPGMELTDNLMAFVERKLFTLNTGHAITAYLGKLAGHQ 233
                    79************7..........48999***********************.99**************************************** PP

  Mannitol_dh_C  98 tiheamkdeeiraivkkllteevapllkkv..deqdleeYadkiieRFsNpyikdtvervaldGsqklpkrilpslrrlikagtlpellalgvalw 191
                    ti++a+ d++ira+v+++++e+ a+l+k++  d q++++Y++ki++RF+Npy+kd+verv+++     p r+l++ +rlik  +l  +l++g + +
     CTQ30530.1 234 TIRDAILDKKIRAVVQGAMEESGAVLIKRYafDPQKHAAYIQKILGRFENPYLKDDVERVGRQ-----PLRKLSAGDRLIK--PLLGTLEYG-LPH 321
                    ***************************************************************.....*************..*********.*** PP

  Mannitol_dh_C 192 irylegvaeggnyiekeDpqleelqeaallakervkavlaekeileedlaqn 243
                     ++++g+a+++++++++Dpq++el++  l+a+++++a+la+ ++l++ +  +
     CTQ30530.1 322 RNLVKGIAAAMHFRSEDDPQAQELAA--LIADKGPQAALAQISGLDAASDVV 371
                    **************************..***************999766655 PP

>> Mannitol_dh  Mannitol dehydrogenase Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.1   1.9e-30   8.3e-27       1     151 []       1     123 [.       1     123 [. 0.93

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 1.9e-30
                  EEEEEES-SHHHHHTHHHHHHHHTT--TT-EEEEEE-STTHHHHHHHTTTT-EEEEE-SSS---EEEE--EEEEEEGGG-HHHHHHHHTSTT--EEEE CS
  Mannitol_dh   1 erivhfGaGnfhRahqayiddLlaeegldwgivevnlrevdareaLkaqdelyvviekgeeskearlvgsvnavlsveedlealieamaePeirivsl 98 
                  ++++hfGaGn++R+   +i++Lla+ g+++++++vn+++ da   L+a+++++v+++   e++++++v+ vnav s+ +   ++++++ae  +++v++
   CTQ30530.1   1 MKALHFGAGNIGRG---FIGKLLADAGIELTFADVNQTVLDA---LNARHSYQVHVVG--ENEQVDTVSGVNAVSSIGD---EVVDLIAE--VDLVTT 85 
                  799***********...*************************...*************..9999999999999999996...6*******..****** PP

                  ---TTTBETTTEB-TTSHHHHHHHH-TTHHHHHHHHHHHT.T----EEEE-SS- CS
  Mannitol_dh  99 tvtekGidatgeletdlpaiaadlakpellvealkrrraa.glkpltiisCdnv 151
                  +v++            l++ia  +ak+      l++r+a+  + pl+ii+C+n+
   CTQ30530.1  86 AVGP----------VVLERIAPAIAKG------LAQRKAQgTERPLNIIACENM 123
                  ****..........99**********9......55555551578*********8 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   5.6e-06     0.025       5      86 ..       6      87 ..       3      96 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.6e-06
                E--SCCHHH.HHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEEEES-HHHHH.C-SEEEE-S CS
     3HCDH_N  5 iGaGtmGag.iaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalarisfttdleeav.dadlviEav 86
                 GaG +G+g i +++a ag+e +  d+++  l++ +++ + +++ + e+++++  +v+ + a  s+ +++ +++ ++dlv  av
  CTQ30530.1  6 FGAGNIGRGfIGKLLADAGIELTFADVNQTVLDALNARHSYQVHVVGENEQVD--TVSGVNAVSSIGDEVVDLIaEVDLVTTAV 87
                59******97789*************************999999998888888..55555555566677777777888887776 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   2.4e-05      0.11       3      79 ..       5      89 ..       3     104 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.4e-05
                     EE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH..........TTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSG CS
  Sacchrp_dh_NADP  3 iiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka..........lgvrfeaialdaenyeavLaallkegdlvvnlspp 79
                      +GaG++G++++ +l++   +  e+t ad +++ l+al a             +v+  +    ++ + + ++ l++e dlv  +++p
       CTQ30530.1  5 HFGAGNIGRGFIGKLLADAGI--ELTFADVNQTVLDALNARHsyqvhvvgenEQVDTVSGVNAVSSIGDEVVDLIAEVDLVTTAVGP 89
                     58*******************..9************998776766555554433333333344455555556666666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2812.24
//
Query:       CTQ30531.1  [L=198]
Description: DNA-binding repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-62  208.2   0.0    8.7e-62  208.0   0.0    1.1  1  MtlR      Mannitol repressor


Domain annotation for each model (and alignments):
>> MtlR  Mannitol repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.0   0.0   4.9e-66   8.7e-62       2     164 ..      29     187 ..      28     188 .. 0.96

  Alignments for each domain:
  == domain 1  score: 208.0 bits;  conditional E-value: 4.9e-66
        MtlR   2 edevlEkLneqenvrsflaaavkileeavdqLiervFrkddfavkyvvepLleksGPLadlsvrlkllyaLGviskevyeDielfiqlkeelnedekey 100
                 e++vlE+Ln+ ++vrsfl+a+v++l+eav++L+ +vFrkdd+avky+vepLle sGPL+dlsvrlkl+y+LGvis+ +yeD el+++l+eeln+d +ey
  CTQ30531.1  29 ENRVLERLNAGKTVRSFLIATVELLTEAVNILVLQVFRKDDYAVKYAVEPLLEGSGPLGDLSVRLKLIYGLGVISRAEYEDAELLMALREELNHDGNEY 127
                 89************************************************************************************************* PP

        MtlR 101 eFsddeildfikelhlvsekslleleeekeeeddsllyqlqqqryeqlirsaLiLavtelleel 164
                 +F+ddei++++ elh+v++ +++++     +++d+ l+++q+ ry+q++rs+++L++tel++++
  CTQ30531.1 128 SFTDDEIIGPFGELHCVAALPPTPQF----DDSDAELLAMQKLRYQQMVRSTMVLSLTELISRI 187
                 *******************8876666....455999*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1619.29
//
Query:       CTQ30532.1  [L=74]
Description: hypothetical protein CH1034_360045 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00012   21.7   0.1    0.00015   21.3   0.1    1.1  1  DNA_pol3_theta  DNA polymerase III, theta subunit


Domain annotation for each model (and alignments):
>> DNA_pol3_theta  DNA polymerase III, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   8.4e-09   0.00015      16      61 ..      15      60 ..      12      66 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.4e-09
  DNA_pol3_theta 16 nvdlaasgvafkERynmPVvaeqvereqPeaLreYFreRlayyRee 61
                    +vd  as+ af E +++    ++v r+ P+     F +Rl+yyR+ 
      CTQ30532.1 15 AVDFMASSQAFMEYLKKSPRLQHVPRDIPQDKEALFLQRLEYYRQL 60
                    69***************9999***********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 578.66
//
Query:       CTQ30533.1  [L=120]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-34  116.5   1.2    6.6e-34  115.7   1.2    1.4  1  DUF2810       Protein of unknown function (DUF2810)
  ------ inclusion threshold ------
       0.14    9.3   0.0       0.14    9.3   0.0    1.0  1  DUF825        Plant protein of unknown function (DUF825)
       0.22   11.6   7.6       0.24   11.5   2.2    2.5  2  DUF1192       Protein of unknown function (DUF1192)
       0.51   10.2   4.5       0.63    9.9   4.5    1.2  1  ACCA          Acetyl co-enzyme A carboxylase carboxyltransfer
       0.68   10.6   4.9        1.3    9.7   4.9    1.6  1  YabA          Initiation control protein YabA
        1.5    9.2  10.8       0.34   11.2   6.7    2.1  2  ABC_tran_CTD  ABC transporter C-terminal domain
          2    8.7   8.1       0.53   10.6   0.5    3.0  3  HALZ          Homeobox associated leucine zipper
        2.4    8.0   6.4        1.8    8.4   5.4    1.3  1  CHD5          CHD5-like protein
        2.6    7.9   9.8        3.4    7.5   5.5    2.5  2  DivIC         Septum formation initiator
        2.9    8.3   9.3         11    6.5   1.5    2.7  3  FlaC_arch     Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> DUF2810  Protein of unknown function (DUF2810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   1.2   3.7e-37   6.6e-34       1      52 [.      66     117 ..      66     118 .. 0.97

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 3.7e-37
     DUF2810   1 klqelpFkRaltKaEqAdmGkLKksVrGLvvVHPmTalGrelglkevTGyAp 52 
                 kl++lpF+Ra+tK+EqAdmGkLKksVrGLvvVHPmTalGre+glke+TG+A 
  CTQ30533.1  66 KLMSLPFRRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLKEMTGFAR 117
                 689***********************************************96 PP

>> DUF825  Plant protein of unknown function (DUF825)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0     8e-05      0.14     510     559 ..      50     102 ..      14     118 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 8e-05
      DUF825 510 e..rstrdqkllkkeqdvslvlsrrs.enkelvnifkiitylqntvsihpiss 559
                 e  rs + qkl k  q+   ++ rr+  +ke  ++ k+   ++  v +hp+++
  CTQ30533.1  50 ErlRSVQSQKLSKEAQKLMSLPFRRAiTKKEQADMGKLKKSVRGLVVVHPMTA 102
                 344799***********99999999835789*******************975 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.3     0.082   1.5e+02      33      49 ..       6      22 ..       4      32 .. 0.72
   2 ?   11.5   2.2   0.00014      0.24      23      50 ..      36      63 ..      35      65 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.082
     DUF1192 33 eaEIaRleaaiakkkas 49
                + EI+Rl++ +++ + +
  CTQ30533.1  6 KNEIKRLSDRLDAIRHQ 22
                679****9877665544 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00014
     DUF1192 23 eELeerIalLeaEIaRleaaiakkkasr 50
                +ELe+  a+Le EI+Rl+   ++k +++
  CTQ30533.1 36 AELEKEKATLETEIERLRSVQSQKLSKE 63
                79****************9888887765 PP

>> ACCA  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.5   0.00035      0.63       5      77 ..       6      78 ..       1      88 [. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00035
        ACCA  5 ekpiaeleekieelkklaee.sevdlseeieklekkleklkkeiyknltpwqkvqlaRhpeRpktldyiealfe 77
                +++i++l+++++ ++++++e s v+ +++ ++lek+ ++l++ei ++l  +q  +l++++++  +l + +a+++
  CTQ30533.1  6 KNEIKRLSDRLDAIRHQQAElSLVEAADKYAELEKEKATLETEI-ERLRSVQSQKLSKEAQKLMSLPFRRAITK 78
                3579*********98886664889999************99999.799**********9999998888777776 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.9   0.00074       1.3       6      62 ..      12      66 ..       4      95 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00074
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXX CS
        YabA  6 lfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekek 62
                l d+l+++ +q +el  +l e  ++ ael +e a+Le+e e+lr+ ++++ +ke++k
  CTQ30533.1 12 LSDRLDAIRHQQAEL--SLVEAADKYAELEKEKATLETEIERLRSVQSQKLSKEAQK 66
                444444444443333..4667778999******************996555555544 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   6.7   0.00019      0.34      15      60 ..       7      52 ..       1      55 [. 0.85
   2 ?    4.4   4.7     0.024        44      18      34 ..      36      52 ..      32      81 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00019
  ABC_tran_CTD 15 aeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeel 60
                  +eI +L  ++ ++  + a+ +l +  +k ael +e+++le+e+e+l
    CTQ30533.1  7 NEIKRLSDRLDAIRHQQAELSLVEAADKYAELEKEKATLETEIERL 52
                  578888888888888888888888889*****************87 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.024
  ABC_tran_CTD 18 eaLEeeiaeleaeladp 34
                  ++LE+e+a+le+e++  
    CTQ30533.1 36 AELEKEKATLETEIERL 52
                  34455555555544433 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.4   2.5e+03      33      42 ..       7      16 ..       6      26 .. 0.74
   2 ?   10.6   0.5    0.0003      0.53      20      40 ..      34      54 ..      32      57 .. 0.89
   3 ?    1.8   0.3      0.15   2.8e+02      28      39 ..      57      68 ..      54      70 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
        HALZ 33 aelqeLkekl 42
                +e+++L+++l
  CTQ30533.1  7 NEIKRLSDRL 16
                6777777765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0003
        HALZ 20 dydsLkkenekLkaelqeLke 40
                +y  L+ke+ +L++e+++L++
  CTQ30533.1 34 KYAELEKEKATLETEIERLRS 54
                57789**************96 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.15
        HALZ 28 nekLkaelqeLk 39
                 +kL +e q+L 
  CTQ30533.1 57 SQKLSKEAQKLM 68
                588888888885 PP

>> CHD5  CHD5-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.4   0.00098       1.8      38      99 ..       6      67 ..       1      77 [. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00098
        CHD5 38 akeqrklkkellklkeelnsisaqDefAkWaKlnRkldkleeeleklkkelsaskssfkkkl 99
                 +e ++l   l+++++++++ s  +   k+a l+ +   le+e+e+l++ +s++ s+  +kl
  CTQ30533.1  6 KNEIKRLSDRLDAIRHQQAELSLVEAADKYAELEKEKATLETEIERLRSVQSQKLSKEAQKL 67
                4688899999999999999999999999*******************998888776665555 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.5     0.033        59      23      43 ..       6      26 ..       2      36 .. 0.53
   2 ?    7.5   5.5    0.0019       3.4      20      52 ..      22      54 ..      19      71 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.033
                HHHHHHHHHHHHHHHHHHHHH CS
       DivIC 23 kqeiaalqaelaklkaeneeL 43
                k+ei++l + l++++ +++eL
  CTQ30533.1  6 KNEIKRLSDRLDAIRHQQAEL 26
                344444444444444444444 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0019
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC 20 kqlkqeiaalqaelaklkaeneeLeaevkdLks 52
                +q +  +++  +++a+l +e++ Le e+++L+s
  CTQ30533.1 22 QQAELSLVEAADKYAELEKEKATLETEIERLRS 54
                566667778888899999999999999999976 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.2    0.0076        14       3      27 ..       2      27 ..       1      29 [. 0.87
   2 ?    6.5   1.5    0.0059        11       3      33 ..      36      67 ..      34      70 .. 0.76
   3 ?   -1.6   0.0       2.1   3.7e+03      32      40 ..      86      94 ..      78      97 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0076
   FlaC_arch  3 delE.nklsklsteletvkkeneels 27
                +e+E n++++ls +l+ ++ ++ els
  CTQ30533.1  2 KEVEkNEIKRLSDRLDAIRHQQAELS 27
                6777479***************9997 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0059
   FlaC_arch  3 delEnklsklsteletvkk.eneelsksveel 33
                 elE++   l+te+e +++ + ++lsk+ ++l
  CTQ30533.1 36 AELEKEKATLETEIERLRSvQSQKLSKEAQKL 67
                58999999999999999983445688877765 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.1
   FlaC_arch 32 elkenVkdl 40
                +lk++V+ l
  CTQ30533.1 86 KLKKSVRGL 94
                455555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1777  (0.0991132); expected 358.6 (0.02)
Passed bias filter:                      793  (0.04423); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 942.74
//
Query:       CTQ30534.1  [L=551]
Description: L-lactate permease [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.9e-229  760.7  40.3   8.9e-229  760.5  40.3    1.0  1  Lactate_perm  L-lactate permease


Domain annotation for each model (and alignments):
>> Lactate_perm  L-lactate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  760.5  40.3    5e-233  8.9e-229       1     522 []      16     542 ..      16     542 .. 0.99

  Alignments for each domain:
  == domain 1  score: 760.5 bits;  conditional E-value: 5e-233
  Lactate_perm   1 lsalvalvPIlllllalavlklkgykaallslavsviiallvykmpvekvlaavlkgalsgllpialviiaavflyklsvksgafeiirksilsisp 97 
                   ls+l+a +PIl++++al++lklkgy aa +++a+++++all+ykmpv  +la+v++g+++gl+pia++iiaavf+yk+svk+g+f+iir+silsi+p
    CTQ30534.1  16 LSSLIASLPILFFFFALIKLKLKGYIAATWTVAIALVVALLFYKMPVDRALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDIIRSSILSITP 112
                   799********************************************************************************************** PP

  Lactate_perm  98 drriqvlligfafgaflEGaaGfGtpvAIsaalLvglGfkPlyaaglcLIantapvafGavGiPitagagatklsaleisslvgiilvlisllipll 194
                   d+r+q+l++gf+fgaflEGaaGfG+pvAI+aalLvglGf+PlyaaglcLI+ntapvafGa+GiPi+++ ++t+++++ i+++vg++l+++++++ ++
    CTQ30534.1 113 DQRLQMLIVGFSFGAFLEGAAGFGAPVAITAALLVGLGFNPLYAAGLCLIVNTAPVAFGAMGIPILVAGQVTGIDSFAIGQMVGRQLPFLTIIVLFW 209
                   ************************************************************************************************* PP

  Lactate_perm 195 lvilldgvkdiketfpavlvsglsfaiaqflisnvlGpelpsilgalvslvilalflkafqpkeifrfagkeeskeksel.....kaakilkAlsPf 286
                   +++++dg+++iket+pav+v+g sfaiaq+l+sn+lGpelp+i+++lvslv+l+lflk++qp++ifrf +  +s+ +++l     +a+++++A+sPf
    CTQ30534.1 210 IMAIMDGWRGIKETWPAVIVAGGSFAIAQYLSSNFLGPELPDIISSLVSLVCLTLFLKRWQPVRIFRFGDLGASQVDMTLartryTAGQVIRAWSPF 306
                   *****************************************************************************999999999*********** PP

  Lactate_perm 287 vllvavivltsipllkalfeeggllatkllsleleelsklilkikpiveeatalevvfkfkllsspgtiillaavlsiavlklsskdalkvlketlk 383
                   ++l+a+++l+s+p +kalf+ gg+++  +++++++ l+k + +++p+v+ at++++v+kf++ls++gt+il+aa+lsi++l++++kdal+++  tlk
    CTQ30534.1 307 LFLTATVTLWSVPPFKALFAPGGAMYDFVINISVPFLDKMVARMPPVVSAATPYAAVYKFDWLSATGTAILFAALLSIVWLRMKPKDALTTFAGTLK 403
                   ************************************************************************************************* PP

  Lactate_perm 384 elklpilaiilvlalanlmnvsGlsktlalalaetGsaftlfspllGalGvfltGSdtvsNllFgslQletaeqiglsevlllaantvGgvvgkmis 480
                   +l+lpi++i++vla+a ++n+sGls+tlalala+tG+aft+fsp+lG+lGvfltGSdt+sN+lF++lQ+++a+qig+s+ ll+aant+Ggv+gkmis
    CTQ30534.1 404 DLALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLGWLGVFLTGSDTSSNALFAALQATAAQQIGVSDILLVAANTTGGVTGKMIS 500
                   ************************************************************************************************* PP

  Lactate_perm 481 pqsiaiacaavglvgkEsdllrktviysliyliivgvvalll 522
                   pqsiaiacaavglvgkEsdl+r+tv++sli++++vg++++l+
    CTQ30534.1 501 PQSIAIACAAVGLVGKESDLFRFTVKHSLIFTCMVGLITTLQ 542
                   ***************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      204  (0.0113782); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 4350.90
//
Query:       CTQ30535.1  [L=257]
Description: DNA-binding transcriptional repressor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-23   83.6   8.7    1.4e-23   83.6   8.7    1.9  3  FCD        FCD domain
    1.7e-21   75.6   1.8    3.4e-21   74.7   1.8    1.5  1  GntR       Bacterial regulatory proteins, gntR family
     0.0014   18.9   0.0     0.0028   18.0   0.0    1.5  1  Rrf2       Transcriptional regulator
  ------ inclusion threshold ------
      0.011   15.7   0.5      0.022   14.7   0.5    1.5  1  HTH_Crp_2  Crp-like helix-turn-helix domain
      0.012   15.2   1.5      0.073   12.6   0.1    2.4  2  HTH_24     Winged helix-turn-helix DNA-binding
      0.029   14.2   0.3      0.076   12.8   0.3    1.8  1  HTH_IclR   IclR helix-turn-helix domain
      0.048   14.3   0.0       0.15   12.7   0.0    1.8  2  RPA_C      Replication protein A C terminal
      0.085   12.9   1.0        1.4    9.0   0.2    2.6  3  HTH_29     Winged helix-turn helix
      0.091   13.0   0.3        0.2   11.9   0.3    1.5  1  PaaX       PaaX-like protein
        0.1   12.5   0.0       0.19   11.7   0.0    1.4  1  HTH_36     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.3       3.8   6.7e+03       5      12 ..      16      23 ..       7      52 .. 0.57
   2 !   83.6   8.7     8e-27   1.4e-23       1     123 [.     100     222 ..     100     224 .. 0.91
   3 ?   -3.5   0.1       7.4   1.3e+04     107     118 ..     229     240 ..     227     243 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.8
         FCD  5 lRalLEpe 12
                +Ral+E  
  CTQ30535.1 16 VRALIEEQ 23
                33333332 PP

  == domain 2  score: 83.6 bits;  conditional E-value: 8e-27
         FCD   1 dlyelRalLEpeaarlaarratdadlaeleellealeeaaaegdleefaeadraFHralaeaagnpvlaelleelrarlrr....lrrlalssperlee 95 
                 d++e+R+++E++ a  aa+ratdad ++++  +ea +  ++    + +++ad +FH a+aea++n vl ++++ + + l+      r++ ++ p   ++
  CTQ30535.1 100 DILEARHAIEASTAWHAAMRATDADKEKIRLCFEATQSEDP----DIASQADVRFHLAIAEASHNVVLLQTMRGFFDLLHSsvkqSRQRMYQVPPVFAR 194
                 79*******************************99887755....459**********************99999999998655555555559****** PP

         FCD  96 slaeHraildAirardadaAraamrrHl 123
                   ++H+a+++Ai a+da+aAr+am  Hl
  CTQ30535.1 195 LTEQHQAVMEAIVAGDAEAARQAMMGHL 222
                 **************************98 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 7.4
         FCD 107 irardadaAraa 118
                 i++ d+d+Ar+a
  CTQ30535.1 229 IKRFDEDQARQA 240
                 777788888886 PP

>> GntR  Bacterial regulatory proteins, gntR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   1.8   1.9e-24   3.4e-21       2      64 .]       9      71 ..       8      71 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.7 bits;  conditional E-value: 1.9e-24
                HHHHHHHHHHHHHTTSS-TTSB---HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTCEEEE CS
        GntR  2 yeqvyerLredIlsgelrpGdkLPsereLaaefgVsrttvReALrrLeaeglverrqgrGtfV 64
                +++v++r+r++I + +l++G++LP+er+Laa++gVsr+++ReAL +L+ eg++ +r+g+GtfV
  CTQ30535.1  9 ADDVARRVRALIEEQQLEAGMRLPAERQLAAQLGVSRNSLREALAMLVNEGVLLSRRGGGTFV 71
                789***********************************************************9 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.6e-06    0.0028      27      62 ..      33      68 ..       8      79 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.6e-06
                -HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT- CS
        Rrf2 27 sseeiaerqnispsylekilakLrkaglvksvrGkg 62
                + +++a++ ++s++ l+  la+L ++g++ s+rG g
  CTQ30535.1 33 AERQLAAQLGVSRNSLREALAMLVNEGVLLSRRGGG 68
                4479******************************75 PP

>> HTH_Crp_2  Crp-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.5   1.2e-05     0.022      18      54 ..      29      65 ..      12      74 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.2e-05
                EEEEHHHHHHHHHTTSSHHHHHHHHHHHHHTTSEE.ET CS
   HTH_Crp_2 18 ielpltqeelAsmlGltretvsrilseLkreglis.rg 54
                 +lp   ++lA+ lG++r ++  +l+ L +eg++  r+
  CTQ30535.1 29 MRLP-AERQLAAQLGVSRNSLREALAMLVNEGVLLsRR 65
                4454.4569************************88543 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.19   3.3e+02      34      45 ..      12      23 ..      12      26 .. 0.85
   2 ?   12.6   0.1   4.1e-05     0.073      21      46 ..      35      60 ..      34      61 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.19
      HTH_24 34 vnrrlkrLeeeG 45
                v rr++ L+ee 
  CTQ30535.1 12 VARRVRALIEEQ 23
                78*******985 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.1e-05
      HTH_24 21 reLAerlglSpstvnrrlkrLeeeGl 46
                r+LA +lg+S++ +++ l  L++eG+
  CTQ30535.1 35 RQLAAQLGVSRNSLREALAMLVNEGV 60
                79***********************8 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   4.3e-05     0.076      22      48 ..      35      61 ..      17      64 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.3e-05
                HHHHHHHTS-HHHHHHHHHHHHHTTSE CS
    HTH_IclR 22 selArrtglpkStvhRlLqtLvelGyv 48
                ++lA+++g+++ + +  L+ Lv++G +
  CTQ30535.1 35 RQLAAQLGVSRNSLREALAMLVNEGVL 61
                69***********************86 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.5e-05      0.15      50      97 ..      12      61 ..       5      64 .. 0.82
   2 ?   -2.0   0.0       3.2   5.7e+03      47      58 ..     195     206 ..     175     236 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.5e-05
                HHHHHHHHHHH.SXSTTTEEH...HHHHHHSTSXHHHHHHHHHHHHHTTSE CS
       RPA_C 50 laqqvlnlikqspeseeGvhv...deiaqklrlsvndvkqavdeLsneGii 97
                +a++v  li + ++ e+G+ +   +++a++l++s n++++a+  L+neG++
  CTQ30535.1 12 VARRVRALIEE-QQLEAGMRLpaeRQLAAQLGVSRNSLREALAMLVNEGVL 61
                56666667777.88888988755579***********************97 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.2
                 SXHHHHHHHHHH CS
       RPA_C  47 ltalaqqvlnli 58 
                 lt+  q v+++i
  CTQ30535.1 195 LTEQHQAVMEAI 206
                 444455555444 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.8   3.1e+03      28      46 ..      12      30 ..       8      35 .. 0.77
   2 ?    9.0   0.2   0.00077       1.4      16      51 ..      35      68 ..      17      69 .. 0.89
   3 ?    1.5   0.0      0.17     3e+02      25      43 ..     221     239 ..     209     254 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.8
      HTH_29 28 tvyrwlkrfeegGlaalld 46
                  +r++ + ee  l+a ++
  CTQ30535.1 12 VARRVRALIEEQQLEAGMR 30
                5789999999988888776 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00077
      HTH_29 16 sqiAkllglsrrtvyrwlkrfeegGlaalldrrrsg 51
                +q+A++lg+sr + + +l   +++G+  ll+rr++g
  CTQ30535.1 35 RQLAAQLGVSRNSLREALAMLVNEGV--LLSRRGGG 68
                79***********************5..99877665 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.17
      HTH_29  25 srrtvyrwlkrfeegGlaa 43 
                 +   v  ++krf+e+ ++ 
  CTQ30535.1 221 HLGFVHATIKRFDEDQARQ 239
                 56678999******98665 PP

>> PaaX  PaaX-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   0.00011       0.2      29      59 ..      37      67 ..      35      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
        PaaX 29 llaelGiseslvRaalsRlakaGwlvrekeg 59
                l a+lG+s +++R al  l+++G l + + g
  CTQ30535.1 37 LAAQLGVSRNSLREALAMLVNEGVLLSRRGG 67
                889***********************99988 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.19      30      53 ..      36      59 ..      31      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
      HTH_36 30 tlakrlglsknTvsraikeLeqlG 53
                 la++lg+s+n+ + a+++L+  G
  CTQ30535.1 36 QLAAQLGVSRNSLREALAMLVNEG 59
                79******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1826.37
//
Query:       CTQ30536.1  [L=394]
Description: L-lactate dehydrogenase, FMN linked [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.3e-123  411.1   0.0     4e-123  410.9   0.0    1.0  1  FMN_dh        FMN-dependent dehydrogenase
    6.2e-06   25.4   3.0    4.7e-05   22.5   0.8    2.2  2  IMPDH         IMP dehydrogenase / GMP reductase domain
    8.4e-06   25.4   1.3    1.2e-05   24.8   1.3    1.1  1  NMO           Nitronate monooxygenase
    0.00035   19.8   0.3    0.00052   19.3   0.3    1.3  1  Glu_synthase  Conserved region in glutamate synthase
     0.0074   15.6   0.5       0.75    9.1   0.4    2.2  2  ThiG          Thiazole biosynthesis protein ThiG
     0.0079   15.4   0.0      0.014   14.6   0.0    1.4  1  IGPS          Indole-3-glycerol phosphate synthase
  ------ inclusion threshold ------
      0.069   12.6   0.1       0.51    9.8   0.1    2.0  2  His_biosynth  Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.9   0.0  1.6e-126    4e-123       1     346 [.      13     375 ..      13     377 .. 0.98

  Alignments for each domain:
  == domain 1  score: 410.9 bits;  conditional E-value: 1.6e-126
                 HHCCS-HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTTHHHHHHHHHHHHTS-EEEETT-SS CS
      FMN_dh   1 ArkrlpkkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpdgelalaraaakagipfvlstvast 99 
                 A++ lp++ f+y++gga  e+tlr+n +++++++lr+r+lr++s+ +l+ttl+ +kl++P  +aPvgl ++++++ge+++a aa + gipf+lstv+ +
  CTQ30536.1  13 AQRILPPFLFHYIDGGAYAEHTLRRNVEDLSDVALRQRILRNMSDLSLETTLFNEKLAMPTALAPVGLCGMYARRGEVQAAGAADDKGIPFTLSTVSVC 111
                 7899*********************************************************************************************** PP

                 -HHHHHHHHTT-EEEEEE-CSSHHHHHHHHHHHHHCTESEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH............. CS
      FMN_dh 100 sleevaaaaegplwfqlyvpkdrelteellkraeaagykalvltvDtpvlgkRerdlrngfslppklklrnllqelakpewaaeal............. 185
                 ++eeva + + p+wfqlyv +dr ++++ l+ra+aag+++lv+tvD+p++g R rd ++g+s p++  lr+++q++++p+wa+++              
  CTQ30536.1 112 PIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNA-ALRRYWQAVTHPQWAWDVGlngrphdlgnisa 209
                 *******9889**************************************************99988.889***************************** PP

                 .......THHHHHHCCCHB-TC--HHHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH..SS-EEEESS CS
      FMN_dh 186 .....kkasaaaefvgkqldpsltwddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavggrievlvDgG 279
                      +  ++   ++++ +dps++w+d++w+r+ +++p+v+KG+l++eda+ av+ G+dgivvSNHGGRqldg+ ++ ++Lp+i++av+g+i++l+D+G
  CTQ30536.1 210 ylgkpTGLEDYIGWLANNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSG 308
                 **8666666666*************************************************************************************** PP

                 --SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHCGGE CS
      FMN_dh 280 irrGsDvlkAlalGAdavllGRpflyglaagGeeGvervleilraelertmallGvksvaeldrsll 346
                 ir+G Dv++ +alGAd vllGR++ly+la+ G++Gv+++l+++++e++ +m+l+G+ks++e++r++l
  CTQ30536.1 309 IRNGLDVVRMIALGADSVLLGRAYLYALATHGKQGVANLLNLIEKEMKVAMTLTGAKSIREISRDSL 375
                 ***************************************************************9976 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.8   1.8e-08   4.7e-05     157     238 ..     257     331 ..     231     337 .. 0.68
   2 ?    2.7   0.1     0.019        50     297     328 ..     342     373 ..     334     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.8e-08
                 HHHHHHHHTT-SEEEE-SS-STTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 157 egakaLieagadavkvGiGpGsiCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsl 238
                 e a++ ++ gad++ v    G     r + gv  + + A+ ++a+a+ k +++++aD Gi++  d+v+ +a+Gad+v+lG+ 
  CTQ30536.1 257 EDARDAVRFGADGIVVSNHGG-----RQLDGV-LSSARALPAIADAV-KGDITILADSGIRNGLDVVRMIALGADSVLLGRA 331
                 555555555555555544433.....555555.33445555555544.568*****************************85 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.019
                 B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 297 gsvkevveqlvgglrsgmgylGaktieelkek 328
                   v+++++ + ++++ +m+ +Gak+i+e+ ++
  CTQ30536.1 342 QGVANLLNLIEKEMKVAMTLTGAKSIREISRD 373
                 558889999999****************9764 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   1.3   4.8e-09   1.2e-05     146     271 ..     256     378 ..     245     393 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 4.8e-09
         NMO 146 vkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavd..iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesdakdahkkkll 242
                  ++ar + + GaD ++v  ++ GG q +      +  + +p ++dav+  i ++A  Gi ++ +v  ++alGA  v +g ++L +     k+ + + l 
  CTQ30536.1 256 PEDARDAVRFGADGIVV--SNHGGRQLDGV---LSSARALPAIADAVKgdITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGKQGVANLLN 349
                 5789999*********9..58899987333...57999*********999*********************************9988887776666555 PP

         NMO 243 eaklddteltsavsGrpaRalatelleel 271
                   + +  +  +  + +++R +  + l ++
  CTQ30536.1 350 LIEKEMKVAMTLTGAKSIREISRDSLVQN 378
                 54444444445555577888876654444 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3     2e-07   0.00052     269     310 ..     295     336 ..     266     342 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2e-07
                   TT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHHT CS
  Glu_synthase 269 eglrdrvsliadGglktgadvvkalalGAdavgigtaalial 310
                     ++  +++ ad g++ g dvv  +alGAd+v +g+a l al
    CTQ30536.1 295 DAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAYLYAL 336
                   5577889******************************99987 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0078        20     167     204 ..     237     273 ..     232     289 .. 0.85
   2 !    9.1   0.4   0.00029      0.75     165     206 ..     288     331 ..     280     339 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0078
                 HHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEES CS
        ThiG 167 lkiiieeakvPvivDAGigspsdaaqamelGadavlln 204
                 l+ i++  + P+++  Gi  p+da  a+ +Gad++++ 
  CTQ30536.1 237 LEWIRDFWDGPMVI-KGILDPEDARDAVRFGADGIVVS 273
                 66777777889888.59******************986 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00029
                 HHHHHHHHH-..SS-BEEES---SHHHHHHHHHTT-SEEEESHH CS
        ThiG 165 ealkiiieea..kvPvivDAGigspsdaaqamelGadavllnta 206
                  al  i + +  ++ ++ D Gi++  d++  + lGad+vll  a
  CTQ30536.1 288 RALPAIADAVkgDITILADSGIRNGLDVVRMIALGADSVLLGRA 331
                 567777777766899*************************9776 PP

>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.4e-06     0.014     166     241 ..     254     332 ..     236     341 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.4e-06
                 SSHHHHHHHHHTT-SEEEEESEETTTTEE-CHHHHHH...CHCC-TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHH CS
        IGPS 166 hdeeeleralklgakiiGvNnRnLktlevdlntteeL...aklvpkdvllvaeSGiktredveklkeegvnafLvGesl 241
                  d e+   a+++ga+ i v n   ++l+  l   + L   a+ v+ d+++ a SGi++  dv ++ + g++++L G + 
  CTQ30536.1 254 LDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALpaiADAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAY 332
                 57788888999999999998866666666555555542117788899*****************************985 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.14   3.6e+02      81     103 ..     252     274 ..     238     292 .. 0.84
   2 ?    9.8   0.1    0.0002      0.51      64     105 ..     292     332 ..     279     339 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.14
                   SSSSHHHHHHHHHCT-SEEEESH CS
  His_biosynth  81 GIrsledveelleagadkviigt 103
                   GI + ed+++++++gad ++++ 
    CTQ30536.1 252 GILDPEDARDAVRFGADGIVVSN 274
                   99999***********9999875 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0002
                   HHHHHHHH-SSEEEEESSSSSHHHHHHHHHCT-SEEEESHHH CS
  His_biosynth  64 lveeiaeevfipvqvGGGIrsledveelleagadkviigtaa 105
                   +++  ++  +i++  ++GIr+  dv +++ +gad v +g a+
    CTQ30536.1 292 AIADAVKG-DITILADSGIRNGLDVVRMIALGADSVLLGRAY 332
                   33333333.488888999999999999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2920.49
//
Query:       CTQ30537.1  [L=157]
Description: putative rRNA methylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-33  115.5   0.0    2.4e-33  115.3   0.0    1.0  1  SpoU_methylase  SpoU rRNA Methylase family
     0.0046   17.0   0.1     0.0091   16.0   0.1    1.5  1  Malate_DH       Malate dehydrogenase enzyme


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.0   2.6e-37   2.4e-33       2     142 .]       2     142 ..       1     142 [. 0.97

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 2.6e-37
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEESTT-SEGC.CSHHHT CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatslkgksls.eidlke 95 
                     l++vl+e+e+p N+G+i+R+++++g+  l++++p +++ ++++++ra+++++e   ++++++++++++  + +  +l+a+++kg++ +  +++++
      CTQ30537.1   2 LNIVLFEPEIPPNTGNIIRLCANTGF-SLHIIEPMGFTWDDKRLRRAGLDYHEFTAVQRYADYAAFVASAQPQ--RLFALTTKGTPAHsAVSYQD 93 
                     79************************.9*********************************************..9******999999677**** PP

                     TEEEEEEBTTTBS-HHHHCTSS..EEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  96 kvalvfGnEdkGlsnellelad..rlvkIpmsgeveSLNvavAvailly 142
                       +l+fG+E++Gl+ ++l+++   + ++Ipm ++ +S+N+++Av++++y
      CTQ30537.1  94 GDFLMFGPETRGLPASILDALPpeQKIRIPMMPDSRSMNLSNAVSVVVY 142
                     ********************99889**********************98 PP

>> Malate_DH  Malate dehydrogenase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     1e-06    0.0091      21      31 ..      44      54 ..      41      55 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1e-06
   Malate_DH 21 LRkAALeYHEF 31
                LR+A L+YHEF
  CTQ30537.1 44 LRRAGLDYHEF 54
                9********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1213.12
//
Query:       CTQ30538.1  [L=273]
Description: serine acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-39  135.1   0.3    1.5e-39  134.6   0.3    1.3  1  SATase_N         Serine acetyltransferase, N-terminal
    5.7e-12   44.9   5.4    6.6e-10   38.3   0.9    2.8  3  Hexapep          Bacterial transferase hexapeptide (six repea
    0.00058   19.5   1.1    0.00058   19.5   1.1    2.3  2  Hexapep_2        Hexapeptide repeat of succinyl-transferase
  ------ inclusion threshold ------
        6.8    6.6   8.2        1.1    9.1   3.6    2.1  2  Gly-zipper_OmpA  Glycine-zipper domain


Domain annotation for each model (and alignments):
>> SATase_N  Serine acetyltransferase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   0.3   3.4e-43   1.5e-39       1     105 []       9     113 ..       9     113 .. 1.00

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 3.4e-43
                 HHHHHHHHHHHHHHH-GGGHHHHHHHTTT-SSHHHHHHHHHHHHH-BSSS-HHHHHHHHHHHHHH-THHHHHHHHHHHHHHHH-TT---THHHHHH-HH CS
    SATase_N   1 vWeslraeaeeaaekepllasflyatilsheslesaLaflLanklasstlsaeqlrelfeealeadpeiveaaraDlkAvlerDpAcksylepllyfKG 99 
                 vW++++aea+++a+ ep+lasf++at+l+he+l saL+++Lanklas+ ++a ++re++eea++adpe++++a++D++Av++rDpA+++y++plly+KG
  CTQ30538.1   9 VWNNIKAEARALADCEPMLASFYHATLLKHENLGSALSYMLANKLASPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKG 107
                 8************************************************************************************************** PP

                 HHHHH. CS
    SATase_N 100 FhAlqa 105
                 FhAlqa
  CTQ30538.1 108 FHALQA 113
                 *****8 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.11   4.9e+02      15      25 ..     143     153 ..     134     158 .. 0.78
   2 !    7.7   0.2   0.00069       3.1       3      36 .]     149     184 ..     144     184 .. 0.78
   3 !   38.3   0.9   1.5e-13   6.6e-10       1      34 [.     193     226 ..     193     228 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.11
                 EEETTEEE-TT CS
     Hexapep  15 viggnVkIGdn 25 
                  i++ +kIG++
  CTQ30538.1 143 DIHPAAKIGRG 153
                 57777888876 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00069
                 EEETTEEE-T..TEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   3 vIGsnvlIgp..faviggnVkIGdnvkIgagvvigg 36 
                 +IG + ++++  + v+g+ ++I d+v I   v++gg
  CTQ30538.1 149 KIGRGIMLDHatGIVVGETAVIEDDVSILQSVTLGG 184
                 666666667788889999999999999988888875 PP

  == domain 3  score: 38.3 bits;  conditional E-value: 1.5e-13
                 TEEEETTEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   1 stvIGsnvlIgpfaviggnVkIGdnvkIgagvvi 34 
                 +++I ++v+Ig++a+i+gn+++G+++kIgag+v+
  CTQ30538.1 193 HPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVV 226
                 689******************************9 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.12   5.4e+02      17      27 ..     161     171 ..     149     177 .. 0.84
   2 !   19.5   1.1   1.3e-07   0.00058       6      33 ..     198     227 ..     195     228 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.12
                 SEEE-TT-EE- CS
   Hexapep_2  17 GvslGdncvvg 27 
                 G+ +G+ +v++
  CTQ30538.1 161 GIVVGETAVIE 171
                 89999999987 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 1.3e-07
                 TT-EE-TT-EE.S.EEE-TT-EE-TT-EE- CS
   Hexapep_2   6 dnCliGanagi.G.vslGdncvvgaGvvit 33 
                 + ++iGa a i G +++G+++++gaG+v+ 
  CTQ30538.1 198 EGVMIGAGAKIlGnIEVGRGAKIGAGSVVL 227
                 6799******9999**************95 PP

>> Gly-zipper_OmpA  Glycine-zipper domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.71   3.2e+03      34      40 ..     159     165 ..     148     168 .. 0.71
   2 ?    9.1   3.6   0.00024       1.1      14      35 ..     204     224 ..     197     228 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.71
  Gly-zipper_OmpA  34 asGavaG 40 
                      a+G+v+G
       CTQ30538.1 159 ATGIVVG 165
                      7888887 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00024
  Gly-zipper_OmpA  14 aGA.avGaitGsaGtGAaiGAas 35 
                      aGA ++G+i+   G+GA+iGA+s
       CTQ30538.1 204 AGAkILGNIE--VGRGAKIGAGS 224
                      4663589997..9*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2067.31
//
Query:       CTQ30539.1  [L=339]
Description: glycerol-3-phosphate dehydrogenase (NAD+) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-52  175.7   0.9    9.5e-52  175.1   0.9    1.3  1  NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogen
    3.2e-49  166.9   0.0    4.9e-49  166.3   0.0    1.3  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
    7.3e-09   35.4   0.0    1.3e-08   34.6   0.0    1.4  1  ApbA            Ketopantoate reductase PanE/ApbA
    3.6e-05   24.3   0.0    0.00049   20.6   0.0    2.5  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    0.00033   20.9   0.0     0.0008   19.6   0.0    1.6  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
    0.00038   20.1   0.0     0.0018   17.9   0.0    2.1  2  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
    0.00062   19.0   0.1      0.001   18.3   0.1    1.3  1  GIDA            Glucose inhibited division protein A
     0.0019   18.4   0.0      0.026   14.8   0.0    2.6  3  TrkA_N          TrkA-N domain
     0.0034   17.6   0.1      0.011   15.9   0.1    1.9  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0043   16.9   0.1     0.0077   16.1   0.1    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
     0.0055   16.6   1.5      0.027   14.4   0.5    2.5  2  Rossmann-like   Rossmann-like domain
  ------ inclusion threshold ------
      0.016   14.5   0.1      0.032   13.5   0.1    1.5  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
        0.1   12.2   0.1        1.4    8.5   0.1    2.2  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin


Domain annotation for each model (and alignments):
>> NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.1   0.9   6.9e-55   9.5e-52       1     139 [.     184     322 ..     184     324 .. 0.98

  Alignments for each domain:
  == domain 1  score: 175.1 bits;  conditional E-value: 6.9e-55
                     -HHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHTSSGGGGGSTTTHHHHHHHHHSCT.HHHHHHHHHHCT--HHHHHH CS
  NAD_Gly3P_dh_C   1 DviGvelagalKNviAiaaGivdglglgdntkaalitrglaEmarlakalgakpetflglaglgDlivtctsgksRNrrfGeelgkgesleeiek 95 
                     D iGv+l+ga+KNviAi+aG++dg+g+g+n++ alitrgl Em+rl+ alga+petf+g+aglgDl++tct+++sRNrrfG++lg+g++++++++
      CTQ30539.1 184 DFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLVEMSRLGAALGADPETFMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSAQD 278
                     89********************************************************************************************* PP

                     HHCC--HHHHHHHHHHHHHHHTT.G.HHHHHHHHHHHS---HHH CS
  NAD_Gly3P_dh_C  96 elnqvleGvetakevyellkkkgvemplleavykilyegkspee 139
                     +++qv+eG++ +kev  l+++ gvemp++e++y++ly gk ++e
      CTQ30539.1 279 KIGQVVEGYRNTKEVRVLAQRLGVEMPITEEIYQVLYCGKIARE 322
                     *************************************9987666 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.3   0.0   3.6e-52   4.9e-49       2     156 ..       8     163 ..       7     164 .. 0.99

  Alignments for each domain:
  == domain 1  score: 166.3 bits;  conditional E-value: 3.6e-52
                     EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--TT CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqalrevlkklkgllkkk 96 
                     ++v+GaGs+GtalA++la+ngh+v+lw++++++i +++++++n ++Lp++ +p++l+ ++dla+al+ ++ i++vvPs+++ +vl+++k+l++ +
      CTQ30539.1   8 MTVIGAGSYGTALAITLARNGHHVVLWGHDPKHIATLQHDRCNAAFLPDVPFPDTLHLESDLATALAASRDILVVVPSHVFGQVLRQIKPLMRSD 102
                     69********************************************************************************************* PP

                     -EEEE---SEET.TTEEHHHHHHHHH-S--.EEEEESS--HHHHHTT--EEEEEEES-HHH CS
  NAD_Gly3P_dh_N  97 ailvsliKGieegtlkllsevieeelkeek.vavlsGpslAeEvakgkptavviaskdkea 156
                     a+lv+++KG+e++t +ll++v++e l+++  +av+sGp++A+E+a+g pta+ +a++d+++
      CTQ30539.1 103 ARLVWATKGLEAETGRLLQDVAREALGDDIpLAVISGPTFAKELAAGLPTAISLAATDPQF 163
                     *****************************99**************************9987 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   9.4e-12   1.3e-08       2     108 ..       9     115 ..       8     131 .. 0.90

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 9.4e-12
                 EEES-SHHHHHHHHHHHHHTHCEEEE-SCH.HHHHHHHHCEEEEETTCEEEEEECEEECCHSCCCCS-ESEEEE-SSGGGHHHHHHHHGGGECTCEEEE CS
        ApbA   2 ailGaGaiGsllaakLakagadvtlilrsr.rlealkknGlrltseggeeilrppealsaeekselepidlvivtvKayqteealeeikplldpntvvl 99 
                 +++GaG+ G+ la +La++g++v+l+++++ ++++l+++ ++  +   ++ ++++ +l+++    l+    ++v v++    ++l++ikpl+ +++  +
  CTQ30539.1   9 TVIGAGSYGTALAITLARNGHHVVLWGHDPkHIATLQHDRCNAAFLP-DVPFPDTLHLESDLATALAASRDILVVVPSHVFGQVLRQIKPLMRSDARLV 106
                 69*******************************************99.88888888888886667788888999********************99999 PP

                 EESSSSCHH CS
        ApbA 100 llqNGlghe 108
                     Gl++e
  CTQ30539.1 107 WATKGLEAE 115
                 888888776 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.6e-07   0.00049       3      82 ..       9      96 ..       7     109 .. 0.82
   2 ?    0.5   0.0       0.7   9.6e+02      25      50 ..     280     304 ..     265     313 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3.6e-07
                   EEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHH.HHHC............-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCG CS
  F420_oxidored  3 giiGaGnmgealasgllaagaqpheivvansrnpekaeela.eelg............vkvtavdneeaaeeadvvvlavkpedveevlsela 82
                    +iGaG+ g ala  l+++g   h++v+    +p+ ++ l+ ++ +              ++ +d ++a++ +  +++ v+ +++ +vl++++
     CTQ30539.1  9 TVIGAGSYGTALAITLARNG---HHVVLW-GHDPKHIATLQhDRCNaaflpdvpfpdtLHLE-SDLATALAASRDILVVVPSHVFGQVLRQIK 96
                   69******************...****66.99999999998455559999999998844444.488888888888899999999999999983 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.7
                    GGCEEEEEESSCCCHHHHHHHHC-EE CS
  F420_oxidored  25 pheivvansrnpekaeelaeelgvkv 50 
                      ++v +  rn ++++ la++lgv++
     CTQ30539.1 280 IGQVVEG-YRNTKEVRVLAQRLGVEM 304
                    5678877.9999*********99875 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.8e-07    0.0008       3     101 ..       9     120 ..       7     131 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.8e-07
                    EEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT..............EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT- CS
  NAD_binding_2   3 gfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg..............akaaesieelvasldvvitmvkagkavdeviegllealkkgd 84 
                     +iG G  G+ +a  l+++g++v+++ ++++++ +l +++              +++ ++++ ++a+ + ++++v++ +   +v++++++ +++++
     CTQ30539.1   9 TVIGAGSYGTALAITLARNGHHVVLWGHDPKHIATLQHDRcnaaflpdvpfpdtLHLESDLATALAASRDILVVVPS-HVFGQVLRQIKPLMRSDA 103
                    79***********************************9999999999999988777777777788887999999987.678899999999999998 PP

                    EEEE-S---HHHHHHHH CS
  NAD_binding_2  85 ilidgstsspedtrela 101
                     l+  +    ++t +l 
     CTQ30539.1 104 RLVWATKGLEAETGRLL 120
                    88877666555555555 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.3e-06    0.0018       3      45 ..       8      50 ..       6      54 .. 0.94
   2 ?   -1.8   0.0       1.5     2e+03     144     156 ..     174     186 ..     156     199 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.3e-06
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHHHHCTTS-S CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDideekvdklnsgkip 45
                    ++viG+G  G   a+ la+ gh+v++   d +++++l++++++
      CTQ30539.1  8 MTVIGAGSYGTALAITLARNGHHVVLWGHDPKHIATLQHDRCN 50
                    69************************************99985 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
                     TTCEEEEE----- CS
  UDPG_MGDP_dh_N 144 gvdfdvvsnPEfl 156
                     g++f+v  nP f+
      CTQ30539.1 174 GKSFRVYINPDFI 186
                     6899******996 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   7.3e-07     0.001       2      38 ..       8      44 ..       7      55 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7.3e-07
                EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT-- CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLithkldtiael 38
                ++ViG+G  G++ A+++ar G++v+L  h+ ++ia+l
  CTQ30539.1  8 MTVIGAGSYGTALAITLARNGHHVVLWGHDPKHIATL 44
                58*************************9999999887 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.9e-05     0.026       3      55 ..      10      63 ..       8      80 .. 0.84
   2 ?    0.1   0.0      0.68   9.4e+02       8      56 ..     118     165 ..     116     169 .. 0.70
   3 ?   -3.4   0.0       8.2   1.1e+04       3      18 ..     313     328 ..     311     332 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-05
                EES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSE.EEES-TTSHHHH CS
      TrkA_N  3 iiGlGrvGrslaeeLseggkdvvvidkdeerveelreegle.vvvgdatdeevL 55
                +iG+G  G++la +L ++g++vv+  +d++++++l+ + ++ ++  d+  +++L
  CTQ30539.1 10 VIGAGSYGTALAITLARNGHHVVLWGHDPKHIATLQHDRCNaAFLPDVPFPDTL 63
                9****************6657**************9998884555666666666 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.68
                 HHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHH CS
      TrkA_N   8 rvGrslaeeLseggkdvvvidkdeerveelreeglevvvgdatdeevLe 56 
                 r+ + +a+e   + ++  vi   +  ++el++   +++   atd+++ e
  CTQ30539.1 118 RLLQDVAREALGDDIPLAVISG-PTFAKELAAGLPTAISLAATDPQFAE 165
                 5556666666665554455544.88999999888999999999998866 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 8.2
                 EES-SHHHHHHHHHHH CS
      TrkA_N   3 iiGlGrvGrslaeeLs 18 
                 ++ +G+++r+ a +L 
  CTQ30539.1 313 VLYCGKIAREAALTLL 328
                 7889999999887775 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   8.1e-06     0.011       1      26 [.      10      35 ..      10      40 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.1e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvllle 26
                   ++GaG  G ++A +La++g++v+l+ 
     CTQ30539.1 10 VIGAGSYGTALAITLARNGHHVVLWG 35
                   8**********************995 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   5.6e-06    0.0077       2      37 ..       8      43 ..       7      52 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.6e-06
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealek 37
                 +viGaG  G+ +a  +a++g++Vvl   +++ +++
  CTQ30539.1  8 MTVIGAGSYGTALAITLARNGHHVVLWGHDPKHIAT 43
                59************************9999887765 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.5   1.9e-05     0.027      13      38 ..       8      33 ..       3     102 .. 0.78
   2 ?   -0.5   0.0      0.78   1.1e+03       6      27 ..     214     235 ..     210     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
  Rossmann-like 13 vGiisaGrvGtalgaaleraghvvvg 38
                   + +i+aG  Gtal+ +l+r gh+vv 
     CTQ30539.1  8 MTVIGAGSYGTALAITLARNGHHVVL 33
                   569********************974 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.78
  Rossmann-like   6 ersarlsvGiisaGrvGtalga 27 
                     r+a ++ G++   r+G+alga
     CTQ30539.1 214 ARTALITRGLVEMSRLGAALGA 235
                    577788899999*******997 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.3e-05     0.032       4      34 ..       9      40 ..       6      52 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.3e-05
                 EEE--SHHHHHHHHHHHHHTS-EEEEE.TTHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
  Pyr_redox_2  4 vviGgGpAGlaaaltlaqagakvtlve.legt 34
                  viG+G  G+a+a+tla++g+ v+l + + ++
   CTQ30539.1  9 TVIGAGSYGTALAITLARNGHHVVLWGhDPKH 40
                 69***********************9854444 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1     0.001       1.4       6      94 ..       7     108 ..       4     120 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.001
                 -EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-.......HHHHHHH......HTT-EE.EEHHHHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT-E CS
        IlvN   6 kiaviGyGsqGhaqalnlrdsgldvvvglregs.......ksvkkAk......eegfev.ltvaeavkkadvvmiliPDelqkevyeeeiepnlkegka 90 
                  ++viG Gs G a a  l  +g +vv+  ++ +         ++ A        + ++   ++a a +++  +++++P ++  +v+ ++i+p +++++ 
  CTQ30539.1   7 AMTVIGAGSYGTALAITLARNGHHVVLWGHDPKhiatlqhDRCNAAFlpdvpfPDTLHLeSDLATALAASRDILVVVPSHVFGQVL-RQIKPLMRSDAR 104
                 5789******************9998744433313222211111111110000111111123344445555566666666666666.566666666666 PP

                 EEES CS
        IlvN  91 lafa 94 
                 l++a
  CTQ30539.1 105 LVWA 108
                 6655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 2742.71
//
Query:       CTQ30540.1  [L=155]
Description: protein export chaperone [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-57  193.3   0.1    2.1e-57  193.0   0.1    1.0  1  SecB      Preprotein translocase subunit SecB


Domain annotation for each model (and alignments):
>> SecB  Preprotein translocase subunit SecB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.0   0.1   1.2e-61   2.1e-57       2     142 .]       5     144 ..       4     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 193.0 bits;  conditional E-value: 1.2e-61
        SecB   2 qeaqpqlriqkqYvkDlSfenpnapeifleaeeqPevkvnlnveakkleeevyevvlkitvtakaeektlFlvevkyaGiftienipeeqlepllliec 100
                 ++++++++iq++Y+kD+Sfe+pnap++f++ ++qPevk++l++ +++l+e+vyevvl++tvta  +e+t+Fl+ev+++Gif+i++i+ +q++++l+++c
  CTQ30540.1   5 NSTEMTFQIQRIYTKDISFEAPNAPQVFQK-DWQPEVKLDLDTASTQLAEGVYEVVLRVTVTAALGEETAFLCEVQQGGIFSIDGIEGTQMAHCLGAYC 102
                 567889**********************88.******************************************************************** PP

        SecB 101 PrilFPyaReivsdlvreggfppllLepinFealyqqqlaqq 142
                 P+ilFPyaRe++++lv++g+fp+l+L+p+nF+al+++ l+qq
  CTQ30540.1 103 PNILFPYARECITSLVSRGTFPQLNLAPVNFDALFMNYLQQQ 144
                 *************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 1176.24
//
Query:       CTQ30541.1  [L=83]
Description: glutaredoxin 3 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-23   81.8   0.0    3.6e-23   81.5   0.0    1.1  1  Glutaredoxin  Glutaredoxin
      2e-06   28.1   0.0    2.2e-06   28.0   0.0    1.1  1  GST_N_3       Glutathione S-transferase, N-terminal domain
    0.00066   19.9   0.0    0.00078   19.7   0.0    1.1  1  GST_N_2       Glutathione S-transferase, N-terminal domain
      0.004   17.3   0.0      0.006   16.7   0.0    1.3  1  SH3BGR        SH3-binding, glutamic acid-rich protein
     0.0064   16.9   0.0     0.0087   16.5   0.0    1.3  1  DUF836        Glutaredoxin-like domain (DUF836)


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0     1e-26   3.6e-23       1      60 []       4      63 ..       4      63 .. 0.99

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 1e-26
                  EEEEESTSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvfidgkhv 60
                  ++++tk tCp+C +ak+lL+++gv f+e  +d d++ ree+ ++sg+ tvPq+fid +h+
    CTQ30541.1  4 IEIYTKATCPFCIRAKALLNSKGVTFHELPIDGDAAKREEMIQRSGRTTVPQIFIDAQHI 63
                  79********************************************************98 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   6.1e-10   2.2e-06       2      58 ..       7      64 ..       6      75 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 6.1e-10
                ES-TTSHHHHHHHHHHHHHT--EEEE---TTTT.HHHHHHH-TT--SSEEETTS-EEE CS
     GST_N_3  2 ygfpaSpyarrvrlaLnekglpvevvevtpgeh.deellaknplgkvPvLeddgealt 58
                y   ++p++ r++ +Ln kg+ +++ +++++   +ee+ + +++ +vP + +d++ + 
  CTQ30541.1  7 YTKATCPFCIRAKALLNSKGVTFHELPIDGDAAkREEMIQRSGRTTVPQIFIDAQHIG 64
                78899************************99966**************9988776555 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.2e-07   0.00078       2      56 ..      12      62 ..      11      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.2e-07
                -HHHHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTEE CS
     GST_N_2  2 CPwahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgqv 56
                CP++ R+  +l+ kg++++  ++   + +  k ee  + ++r+tVP +++ d+q 
  CTQ30541.1 12 CPFCIRAKALLNSKGVTFHELPI---DGDAAKREEMIQRSGRTTVPQIFI-DAQH 62
                *******************8777...34556678*************999.5554 PP

>> SH3BGR  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.7e-06     0.006      25      83 ..      20      69 ..       5      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.7e-06
                HHHHHTT--EEEEETTT-HHHHHHHHHCST-CCCS-SSSS--S-EEEETTEEEEEHHHH CS
      SH3BGR 25 riLdakkiefdevDitkdeeerelmrenaapeekkpengkplPPqifnedeYcGDydaf 83
                 +L++k ++f+e+ i  d+++re+m +++         g+++ Pqif + +++G  d+ 
  CTQ30541.1 20 ALLNSKGVTFHELPIDGDAAKREEMIQRS---------GRTTVPQIFIDAQHIGGCDDL 69
                689***********************887.........578899********9988875 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.4e-06    0.0087       2      56 ..       4      59 ..       3      65 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.4e-06
                EEEEE-TT-HHHHHHHHHHHHHCCCTTEEEEEEETT....T-CC.CHCCCCTTTTEEEEC CS
      DUF836  2 ltLyskpgChlCeqakekLkelkleegleleviDIa....kdee.leakYgleipvlale 56
                + +y+k  C+ C +ak++L   ++  +    +  I+    k+ee  ++    ++p+++++
  CTQ30541.1  4 IEIYTKATCPFCIRAKALLNSKGVTFH----ELPIDgdaaKREEmIQRSGRTTVPQIFID 59
                89******************7665554....44444222233333444445566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.23s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 687.21
//
Query:       CTQ30542.1  [L=143]
Description: putative rhodanese-related sulfurtransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-17   62.8   0.0    4.5e-17   62.5   0.0    1.1  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   2.5e-21   4.5e-17       3     105 ..      43     133 ..      41     135 .. 0.91

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 2.5e-21
   Rhodanese   3 kelkellekgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGGf 101
                  e+ +l++k++++++D R+++++ kghI gA+n+          + +  ++++ el+++   + ++++v++ +g++a++ a +l k+G+++v+vl+ G+
  CTQ30542.1  43 GEATRLINKEDAVVVDLRQRDDFRKGHIAGAINL---------LPSDIKANNVGELEKH---KSQPIIVVDGSGMQAQEPASALNKAGFEKVFVLKEGI 129
                 6788999***999*********************.........8888888888888887...**************9999********999******** PP

   Rhodanese 102 kawk 105
                  +w+
  CTQ30542.1 130 AGWS 133
                 ***8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1093.48
//
Query:       CTQ30543.1  [L=514]
Description: phosphoglycero mutase III, cofactor-independent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-86  289.7   0.3    1.9e-86  289.5   0.3    1.0  1  Metalloenzyme  Metalloenzyme superfamily
      1e-81  273.5   1.0    1.8e-81  272.7   1.0    1.4  1  iPGM_N         BPG-independent PGAM N-terminus (iPGM_N)
  ------ inclusion threshold ------
      0.012   15.1   0.0      0.019   14.3   0.0    1.4  1  Sulfatase      Sulfatase
      0.018   15.2   0.0       0.04   14.0   0.0    1.5  1  PglZ           PglZ domain
      0.041   13.2   0.0      0.073   12.4   0.0    1.3  1  PPR_long       Pentacotripeptide-repeat region of PRORP


Domain annotation for each model (and alignments):
>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.5   0.3   5.3e-90   1.9e-86       1     247 [.       6     500 ..       6     501 .. 0.99

  Alignments for each domain:
  == domain 1  score: 289.5 bits;  conditional E-value: 5.3e-90
                    -EEEEEEETTBB----GGGTTHHHS--HHHHHHHHH.......SEEEEEESSSTT----HHHHHHHH............................. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................. RF
  Metalloenzyme   1 kkvvlvvlDGlGeapadelnaihvAktPtldkLkkeaPerwlikahgtavglpeddmgnsevgHlel............................. 67 
                    k++vlv+lDG+G++++++ nai  AktP++d+L+++ P++ li+a+g++vglp+ +mgnsevgH++l                             
     CTQ30543.1   6 KPMVLVILDGYGYREDQQDNAIYSAKTPVMDALWAKRPHT-LIDASGLEVGLPDRQMGNSEVGHVNLgagrivyqdltrldveikertffanpvlt 100
                    689*************************************.9****************************************************** PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Metalloenzyme  68 ................................................................................................ 67 
                                                                                                                    
     CTQ30543.1 101 aavdkavaagkavhimglmspggvhshedhimamvelaaergaekiylhafldgrdtpprsaektlatfeakfaalgkgriasligryyamdrdnr 196
                    ************************************************************************************************ PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Metalloenzyme  68 ................................................................................................ 67 
                                                                                                                    
     CTQ30543.1 197 wdrveqaydlltlakgefqadtavaglqaayardendefvkatviraagqadaamedgdalifmnfradrareitrafvnadfdgfarkkvvnldf 292
                    ************************************************************************************************ PP

                    ....................................HHHHTT-----EEEEEEEE-S---SSHHHHHT--EEEE--SHHSTT--HHHHHHHHHHHH CS
                    ....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme  68 ....................................lrisetvkfahvtffwnggrsgyfnpleereeipsdtvitfdlqpemkavevaekaldai 127
                                                        lriset+k+ahvtff+ngg++++f++ eer+ i+s++v+t+dlqpem++ e++ek++ ai
     CTQ30543.1 293 vmlteyaadikvacayppaslantfgewmakhdktqLRISETEKYAHVTFFFNGGVEEPFKG-EERILINSPKVATYDLQPEMSSAELTEKLVAAI 387
                    **************************************************************.********************************* PP

                    .CC.-SEEEEEE-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHTTS-TTTEEEEEE-SSB--TTTSS.........-----EEEEEESTT----S-- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 128 lsgkfdlvvvniknaDmvGHtgdleatiaaieaaDeavkeildaieqvdgilvvtADHgnaedmvkrdk.qplTsHtlepVPilivgkglapdkvk 222
                    + gk+d++++n++n DmvGHtg +ea+++a+ea+D+++ ++ +a+e+v+g l++tADHgnae+m +  + q++T+Ht  pVP+++vg++       
     CTQ30543.1 388 KGGKYDTIICNYPNGDMVGHTGVMEAAVKAVEALDRCIDQVAQAVESVGGQLLITADHGNAEQMRDPATgQAHTAHTNLPVPLIYVGNK------- 476
                    ******************************************************************8878******************7....... PP

                    SSHHHHTT-TTEEEEGGGHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 223 egakfrekggLanvaatllnllgle 247
                      +k+++ g+L+++a+t+l+l+g+e
     CTQ30543.1 477 -AVKAVNGGKLSDIAPTMLSLMGME 500
                    .4677889***************97 PP

>> iPGM_N  BPG-independent PGAM N-terminus (iPGM_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.7   1.0   4.9e-85   1.8e-81       3     214 ..      86     299 ..      84     300 .. 0.97

  Alignments for each domain:
  == domain 1  score: 272.7 bits;  conditional E-value: 4.9e-85
                 HHHHCTGGGG-HHHHHHHHHHHHCTSEEEEEEE-SS--SS--CHHHHHHHHHHHHTT-SEEEEEEEE-SSSSTTT-HHHHHHHHHHHHHHCT--EEEEE CS
      iPGM_N   3 kaiedgslfenealkeaiekakkngkalHllGLlSdGgVHShidhllallelakeegvkkvvvhaflDGRDtapksaleyleeleeklkelgvgkiasv 101
                  +i+++++f n++l++a++ka + gka+H++GL+S GgVHSh dh++a++ela+e+g++k+++haflDGRDt+p+sa++ l+++e+k++ lg+g+ias+
  CTQ30543.1  86 VEIKERTFFANPVLTAAVDKAVAAGKAVHIMGLMSPGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAEKTLATFEAKFAALGKGRIASL 184
                 689************************************************************************************************ PP

                 EEHHHHT--SS-HHHHHHHHHHHCCSSSEEECTTHHHHHHHHHHTT--GGG---EEE...TCCGGS--TT-EEEE----CCCCHHHHHHHHSTTHHCC. CS
      iPGM_N 102 sGRyyaMDRdkrwervekaydalvkgegeskaesaveaieesyakgetDefveptviaeegkkegtikdgDaviffNFRaDRareltraltdkefkefe 200
                 +GRyyaMDRd+rw+rve+ayd+l+ ++ge +a++av+ ++++ya++e+Defv++tvi  +g+++++++dgDa+if+NFRaDRare+tra+++ +f++f+
  CTQ30543.1 185 IGRYYAMDRDNRWDRVEQAYDLLTLAKGEFQADTAVAGLQAAYARDENDEFVKATVIRAAGQADAAMEDGDALIFMNFRADRAREITRAFVNADFDGFA 283
                 ************************9999998899***********************99***************************************8 PP

                 ..--TT-EEEESS-S- CS
      iPGM_N 201 ..kakklklvtmteYd 214
                   k+ +l++v++teY 
  CTQ30543.1 284 rkKVVNLDFVMLTEYA 299
                 44556668*******7 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   5.4e-06     0.019     197     309 .]     400     499 ..     321     499 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.4e-06
                 STTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHCEEECSEEE CS
   Sulfatase 197 atffddgseaarqlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekaprvseelvs 295
                  ++++ g++    ++ea   +ve  D +i++v +a+    ++    +++t+Dhg +    + +  ++ +a + +  + vPl+  +++  ++ v+ +  s
  CTQ30543.1 400 PNGDMVGHT---GVMEAAVKAVEALDRCIDQVAQAV----ESVGGQLLITADHGNAE---QMRDPATGQAHTAHTNLPVPLIYVGNKAVKA-VNGGKLS 487
                 444444444...78999999****************....555566899******44...5666666666788888899999988888888.6666655 PP

                 GGGHHHHHHHHTTE CS
   Sulfatase 296 hiDlfptildlagi 309
                   D++pt+l+l+g+
  CTQ30543.1 488 --DIAPTMLSLMGM 499
                 ..**********96 PP

>> PglZ  PglZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.1e-05      0.04     108     169 ..     386     447 ..     341     453 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
        PglZ 108 llkdkevvyivhn..kvDalgdkasteqksfeaveeslkelkelvkslleengykvlltaDHGf 169
                  +k+ ++  i++n  + D++g+  + e +++ av e+l    + v + +e+ g ++l+taDHG+
  CTQ30543.1 386 AIKGGKYDTIICNypNGDMVGHTGVMEAAVK-AV-EALDRCIDQVAQAVESVGGQLLITADHGN 447
                 5666666677777334599999666555554.22.45566666666666667888********8 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     2e-05     0.073     115     180 ..      80     147 ..      72     174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2e-05
                 HHHHH-S---HHHH..HHHHHHHH.HTT-HHHHHHHHHHHHHCT----HHHHHHHHHHHHHTT-HHHHH CS
    PPR_long 115 emekagvsPrLRsy..aPaLaayc.kagdadkaleveehlkasgveleEaelaaLLkvsakagredkvY 180
                 ++++ +v+ + R++  +P+L+a + ka  a+ka+++   ++  gv+  E+ + a+ +++a+ g e k+Y
  CTQ30543.1  80 DLTRLDVEIKERTFfaNPVLTAAVdKAVAAGKAVHIMGLMSPGGVHSHEDHIMAMVELAAERGAE-KIY 147
                 56677788888998667***8765167899********************************965.666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3709.60
//
Query:       CTQ30544.1  [L=418]
Description: protease with a role in cell division [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-27   93.7   0.2    1.7e-26   92.3   0.2    1.7  1  Peptidase_M23    Peptidase family M23
  ------ inclusion threshold ------
       0.03   14.4   2.2      0.034   14.3   0.1    2.0  2  DegQ             DegQ (SacQ) family
      0.077   13.5  22.6       0.12   12.9   6.4    2.5  2  DUF16            Protein of unknown function DUF16
       0.22    9.7  30.7     0.0076   14.5   5.8    2.0  2  FPP              Filament-like plant protein, long coiled-coi
       0.28   10.4  40.5       0.19   11.0  14.4    2.3  2  HemX             HemX, putative uroporphyrinogen-III C-methyl
       0.54    8.8  28.1      0.049   12.3   7.8    2.1  2  AAA_13           AAA domain
        1.1    9.5  48.1      0.087   13.0  14.5    2.4  2  ATG16            Autophagy protein 16 (ATG16)
        1.1    9.3  16.7      0.091   12.9   3.5    2.3  2  Cob_adeno_trans  Cobalamin adenosyltransferase
        1.1    8.0  43.7        2.2    7.1  16.1    2.6  2  Spc7             Spc7 kinetochore protein
        2.2    8.6  32.1       0.88    9.9   4.4    3.4  3  DUF5082          Domain of unknown function (DUF5082)
        5.3    6.3  42.5        1.4    8.2  13.4    2.8  2  GAS              Growth-arrest specific micro-tubule binding
        7.5    6.6   7.4        4.6    7.3   3.3    2.2  2  DUF3793          Protein of unknown function (DUF3793)
        8.5    5.4  40.6        3.2    6.8  38.2    1.4  2  Taxilin          Myosin-like coiled-coil protein
        8.9    6.4  18.2        1.3    9.0   5.7    2.5  2  DUF1664          Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> Peptidase_M23  Peptidase family M23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.2   1.3e-29   1.7e-26       3      96 .]     319     412 ..     318     412 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 1.3e-29
                    ESSEEEEETTT-EEEESSSEEEEEEEEETTTEEEEEEEECTCEEEEEEEESEESS-TTEEE-TTCEEEEEBSTSSCSSSEEEEEEEETTEEE-C CS
  Peptidase_M23   3 hkGidiaapkgtpVlAaadGtVvfagkkegyGnvviidhgdgystlyahlskisvkegqkVkaGqvIGtvgstgrstgphLhfeirkngkavdp 96 
                    +kG+ iaa++gt+V+A+adG+V+ a++ +gyG vv+++hg+g ++ly+ +++  v++g +V+aGq+I+ vgs+g + +p L+feir++g+av+p
     CTQ30544.1 319 WKGMVIAASEGTEVRAIADGRVILADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGTQVRAGQPIALVGSSGGQGRPSLYFEIRRQGQAVNP 412
                    68*************************99*********************************************999****************9 PP

>> DegQ  DegQ (SacQ) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   2.6e-05     0.034      20      37 ..      81      98 ..      78     100 .. 0.90
   2 ?   -1.8   0.2       2.6   3.4e+03      15      36 ..     199     220 ..     192     225 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.6e-05
        DegQ 20 irETtdSLrniNKSiDQy 37
                +rET+dSL ++NK iD +
  CTQ30544.1 81 LRETQDSLNQLNKQIDEM 98
                7***************75 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.6
        DegQ  15 rLEneirETtdSLrniNKSiDQ 36 
                 +LE    E +  L  +  Si Q
  CTQ30544.1 199 KLEQARNERKKTLSGLESSIQQ 220
                 6777778888888888888877 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   6.4     9e-05      0.12      33     102 ..      36     105 ..      30     107 .. 0.67
   2 ?    6.1   8.3     0.012        15      25      99 ..     154     225 ..     143     267 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9e-05
                 HHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHH CS
       DUF16  33 kqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRlDsi 102
                   +Lk i+a +++++  i++++q+   + +++k +++ + a  ++l + +++l+ + + ++++n  l ++
  CTQ30544.1  36 RDQLKSIQADIAARQRAIKQQQQQRASLLAQLKAQEEAIAAAARKLRETQDSLNQLNKQIDEMNAALAKL 105
                 4567777777777777777777777777777777777777777777777777777777777777666665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.012
                 HHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHH CS
       DUF16  25 lnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRl 99 
                 +n+ ++++ ++Lkk  ++++   +q + le+k ++q+  + e+k++q + +++ n+ ++tl  +  ++q+ ++ l
  CTQ30544.1 154 FNQARQETIAELKKTREEMA---VQKSMLEEKQSQQQTLVYEQKAQQAKLEQARNERKKTLSGLESSIQQGQQQL 225
                 67777888888888888877...4455666777777777777777777777777788888888888888766665 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   5.8     6e-06    0.0076     695     774 ..      34     116 ..      12     123 .. 0.80
   2 ?    1.2  17.0     0.064        82     729     833 ..     159     263 ..     137     270 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6e-06
         FPP 695 eeleelksekenl...evelksatenleslkaqlqesEqllaelkseLeslkeskslaetqlkcmkesyesletrateleael 774
                 ++  +lks + ++   +  +k+++++  sl aql+ +E+ +a    +L ++++s +++++q+++m+    +le + +  e +l
  CTQ30544.1  34 DDRDQLKSIQADIaarQRAIKQQQQQRASLLAQLKAQEEAIAAAARKLRETQDSLNQLNKQIDEMNAALAKLERQRASQERNL 116
                 44455555555551114567788889999********************************************9999888776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.064
         FPP 729 EqllaelkseLeslkeskslaet.qlkcmkesyesletrateleaelnelkqkieaLeveLeeekksheeleakckelqeqlervekkevskssaeeed 826
                  +++aelk+  e++   ks++e+ q ++++++ye+   ++++le+  ne k+ ++ Le+ +++ ++   el a+   l+ ++ ++e+    +++ e  d
  CTQ30544.1 159 QETIAELKKTREEMAVQKSMLEEkQSQQQTLVYEQ-KAQQAKLEQARNERKKTLSGLESSIQQGQQQLSELRANESRLRGRIAQAEAAAKARADREARD 256
                 56899999999999999999875277777788875.666667*****************************************9999988888888888 PP

         FPP 827 kklkqek 833
                  ++  ++
  CTQ30544.1 257 AQAVRDR 263
                 8877766 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  14.4   0.00015      0.19      12     102 ..      14     101 ..       3     121 .. 0.60
   2 ?    5.3  18.2    0.0079        10      32     113 ..     157     243 ..     137     273 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00015
        HemX  12 llvalavgaglyylgqqqvqeltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlskvsga 102
                 +l a a+ ag+   +    ++ + + +++q ++aa + + +q   +++q + l ++l++++e+++a++++l ++q +l++l++q+ ++++a
  CTQ30544.1  14 VLYASALSAGVLLCASSAHADDRDQLKSIQADIAARQRAIKQ---QQQQRASLLAQLKAQEEAIAAAARKLRETQDSLNQLNKQIDEMNAA 101
                 555666777766666666666666666666666665555555...5666666666666666666666666666666666666666666655 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0079
        HemX  32 eltaevaelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealeke....leqlqkqleelqqqlskvsga.erkdWlLaeAd 113
                 + + ++ael+++ +++  q++ +e++++q+q+l  + ++++ kle++++e    l+ l++++++ qqqls++ ++ +r   ++a+A+
  CTQ30544.1 157 ARQETIAELKKTREEMAVQKSMLEEKQSQQQTLVYEQKAQQAKLEQARNErkktLSGLESSIQQGQQQLSELRANeSRLRGRIAQAE 243
                 223344555555555555555566677777777777777766776665541111556788999999999999988556666888887 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   7.8   3.8e-05     0.049     402     472 ..      37     107 ..      28     125 .. 0.91
   2 ?    2.5  12.3     0.035        45      93     174 ..     157     243 ..     140     286 .. 0.44

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.8e-05
      AAA_13 402 hlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkafGl 472
                 + ++++++++ + ++++k+ +++  +l ++lk++e+++++++ + +e + +l++ ++ ++e+n  L++  +
  CTQ30544.1  37 DQLKSIQADIAARQRAIKQQQQQRASLLAQLKAQEEAIAAAARKLRETQDSLNQLNKQIDEMNAALAKLER 107
                 5678999***********************************************************99754 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.035
      AAA_13  93 ekqekieklkkeikkleekleaaeaqlqkaek......ekkklekeledeawkkivkkknsalsealkglkyeekfkerllkelkkkn 174
                   qe i++lkk ++++  + +  e++++++++      +++++ +++++e +k  ++  +s +++  ++l++ + +++rl  ++++++
  CTQ30544.1 157 ARQETIAELKKTREEMAVQKSMLEEKQSQQQTlvyeqkAQQAKLEQARNERKK-TLSGLESSIQQGQQQLSELRANESRLRGRIAQAE 243
                 23444444444444433332222222222222222222222222222233333.2244455555444444444444455444555543 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0  14.5   6.8e-05     0.087      32     127 ..      37     118 ..      21     124 .. 0.55
   2 ?    1.9  25.6      0.18   2.3e+02       8     149 ..     142     270 ..     140     282 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.8e-05
       ATG16  32 saleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlae 127
                 ++l++ +a +          +++++ +++++++a     +  a+++++e+++a+    l e++ s ++l++++ e+n++l+kle++  ++e++la+
  CTQ30544.1  37 DQLKSIQADI---------AARQRAIKQQQQQRA-----SLLAQLKAQEEAIAAAARKLRETQDSLNQLNKQIDEMNAALAKLERQRASQERNLAA 118
                 2222222222.........111222222222222.....336677777777777777777777777777777777777777777777777777665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.18
       ATG16   8 eRdarqekafaeliqaynrLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrlle 106
                 +R++r  +++ +++++ ++  + +++l++ ++++  + +  ++ k+s++++            +q+a+ ++leq++ + ++ l+ l  s ++ +q+l e
  CTQ30544.1 142 QRNQR-MQVYFSYFNQARQ--ETIAELKKTREEMAVQKSMLEE-KQSQQQT---------LVYEQKAQQAKLEQARNERKKTLSGLESSIQQGQQQLSE 227
                 67777.6666666666444..5556666666666322222221.1111111.........223334444555555555555555555555555555555 PP

       ATG16 107 lneelqkleeklkedeerlaeleaeraaletklkdreeelrek 149
                 l +  ++l+ ++ + e++ ++  ++ a+  ++++dr++e   k
  CTQ30544.1 228 LRANESRLRGRIAQAEAAAKARADREARDAQAVRDRQQEASRK 270
                 5555555555555555555555555555555555555554444 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.5   7.1e-05     0.091      51     123 ..      47     123 ..      15     125 .. 0.64
   2 ?    1.9   5.4      0.17   2.2e+02      52     117 ..     160     226 ..     136     270 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.1e-05
                      HHHHHHHHHHHHHHHHHHHHHHT.....-BTCCG-S--HHHHHHHHHHHHHHHHHS--EESEEES-SSHHHHHHHHH CS
  Cob_adeno_trans  51 eelkeaLeeiqneLfdlgaelatp....ekkkekkkiteeeveelekeideleaelpplksfilpggspaaaalhva 123
                      ++ ++a+++ q++  +l a+l ++    ++  +k + t++++++l+k+ide++a l +l++    +++++aa+l+ a
       CTQ30544.1  47 AARQRAIKQQQQQRASLLAQLKAQeeaiAAAARKLRETQDSLNQLNKQIDEMNAALAKLERQRASQERNLAAQLDAA 123
                      223334444444444444444433666644555555667779*******************************9876 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.17
                      HHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--.HHHHHHHHHHHHHHHHHS--EESEEES-SSHHH CS
  Cob_adeno_trans  52 elkeaLeeiqneLfdlgaelatpekkkekkkit.eeeveelekeideleaelpplksfilpggspaa 117
                      e+ ++L++  +e+    + l  +++++++   + +++ ++le++ +e +++l+ l+s i +g+++++
       CTQ30544.1 160 ETIAELKKTREEMAVQKSMLEEKQSQQQTLVYEqKAQQAKLEQARNERKKTLSGLESSIQQGQQQLS 226
                      4444455554444444444433322222222222223344555555555555555555555543332 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  16.1    0.0017       2.2     153     236 ..      34     116 ..      28     125 .. 0.66
   2 ?    5.8  19.6    0.0042       5.3     166     276 ..     155     265 ..     142     284 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0017
        Spc7 153 edkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleeki 236
                 +d+++L++ ++ + +   ++++++++  + l++l++++e ++     +L+e++++l++l+++i+e ++ la+l++q++++e ++
  CTQ30544.1  34 DDRDQLKSIQADIAARQRAIKQQQQQRASLLAQLKAQEEAIA-AAARKLRETQDSLNQLNKQIDEMNAALAKLERQRASQERNL 116
                 566677777777777777777777666666666666554443.35667777777777777777777777777777777776665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0042
        Spc7 166 dellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgws 264
                 +++ +e+ +e ++ +ee++ ++++ ee +s +++ + e + + a+l++  +e+kk l+ l++ +++ +++++el+++ s+l+ +ia+ae   +++ + +
  CTQ30544.1 155 NQARQETIAELKKTREEMAVQKSMLEEKQSQQQTLVYEQKAQQAKLEQARNERKKTLSGLESSIQQGQQQLSELRANESRLRGRIAQAEAAAKARADRE 253
                 566667777777777777777777777777777777777777788887777788888888888888888888888888888888888777777777777 PP

        Spc7 265 esevsrlkeevk 276
                 + + ++++++ +
  CTQ30544.1 254 ARDAQAVRDRQQ 265
                 777766666544 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   7.5     0.017        22       5      77 ..      46     122 ..      32     128 .. 0.69
   2 ?    9.9   4.4   0.00069      0.88      21      54 ..     157     190 ..     139     199 .. 0.85
   3 ?    5.1   4.2     0.021        26       2      51 ..     201     250 ..     200     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.017
     DUF5082   5 isklqaqiaelrseiaaleekIerLk....eaktklsdekeslkqkkkklekplnssesWkGkeennydgirsnles 77 
                 i+++q++i + ++++a+l  +++  +    +a +kl +++ sl q +k++ ++ +  + +  ++++++ + +++l+ 
  CTQ30544.1  46 IAARQRAIKQQQQQRASLLAQLKAQEeaiaAAARKLRETQDSLNQLNKQIDEMNAALAKLERQRASQERNLAAQLDA 122
                 45555555555555554444443333333388899999999999999999998888888888887777777776665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00069
     DUF5082  21 aleekIerLkeaktklsdekeslkqkkkklekpl 54 
                 a +e I++Lk++++++  +k+ l++k++++++  
  CTQ30544.1 157 ARQETIAELKKTREEMAVQKSMLEEKQSQQQTLV 190
                 56999************************99875 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.021
     DUF5082   2 ktkisklqaqiaelrseiaaleekIerLkeaktklsdekeslkqkkkkle 51 
                  + ++++++  + l+s i++ ++++++L++  ++l +  ++++++ k+ +
  CTQ30544.1 201 EQARNERKKTLSGLESSIQQGQQQLSELRANESRLRGRIAQAEAAAKARA 250
                 57789999999******************999999998888887777655 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  13.4    0.0011       1.4      44     128 ..      34     115 ..      28     126 .. 0.86
   2 ?    2.6  21.1     0.058        74      76     140 ..     161     225 ..     142     275 .. 0.45

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0011
         GAS  44 rnekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykk 128
                  ++ +l+ i+++    +  +k+++++++ L +qlk +e+   +++++ ++l+e+++ l++l  + + ++  ++k+e++r   +++
  CTQ30544.1  34 DDRDQLKSIQADIAARQRAIKQQQQQRASLLAQLKAQEE---AIAAAARKLRETQDSLNQLNKQIDEMNAALAKLERQRASQERN 115
                 67789999999999999999**********999999998...7788999999999999999999999999999999999776655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.058
         GAS  76 qlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqkt 140
                  +++ +k +++++ +k+ l+e +++ ++l +e++  + ++e++ +er++  +  e++iq+ qq+ 
  CTQ30544.1 161 TIAELKKTREEMAVQKSMLEEKQSQQQTLVYEQKAQQAKLEQARNERKKTLSGLESSIQQGQQQL 225
                 33333444444444444444444444444444444444444444444444444444444444432 PP

>> DUF3793  Protein of unknown function (DUF3793)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1       0.4   5.1e+02      65      89 ..      82     106 ..      19     130 .. 0.57
   2 ?    7.3   3.3    0.0036       4.6      23      88 ..     159     228 ..     143     235 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.4
     DUF3793  65 eevrefLkklgYesesleelleeLk 89 
                 +e+++ L++l+ +  +++++l++L+
  CTQ30544.1  82 RETQDSLNQLNKQIDEMNAALAKLE 106
                 2333333333333333444444443 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0036
     DUF3793  23 e..ikelnelleekgislkvlkekekkalilvyreekLeeylsdeevr..efLkklgYesesleelleeL 88 
                 +  i+el++  ee+ ++ ++l+ek+++   lvy++++ +++l++++++  ++L+ l  + ++ ++ l+eL
  CTQ30544.1 159 QetIAELKKTREEMAVQKSMLEEKQSQQQTLVYEQKAQQAKLEQARNErkKTLSGLESSIQQGQQQLSEL 228
                 14599999999*******************************9988751144544444444555555555 PP

>> Taxilin  Myosin-like coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  38.2    0.0025       3.2      21     218 ..      37     239 ..      25     248 .. 0.80
   2 ?   -1.5   0.0      0.84   1.1e+03     171     212 ..     238     279 ..     237     281 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0025
     Taxilin  21 eaLvkkyaelleerkrlqkqlkklkkkleqlqkekeqlqaelskaalaksKLekLcRelqkqnkklkeeskqrareeeekrkelaekfqa.kLkdiqaq 118
                 ++L++  a++ + ++  ++q ++  + l+ql++++e++ a  +k   +++ L++L +++++ n  l +  +qra +e +   +l++ f++   + iq +
  CTQ30544.1  37 DQLKSIQADIAARQRAIKQQQQQRASLLAQLKAQEEAIAAAARKLRETQDSLNQLNKQIDEMNAALAKLERQRASQERNLAAQLDAAFRQgPHTGIQMV 135
                 6777778999999***************************************************************************6616899**** PP

     Taxilin 119 ieeks.erneklreenaelte.Klkslieqyelreehf..ekllktkelelql..aeaKlqqadallkeeqekkkrekeyllkeakeltkkvkalkete 211
                 +  ++ +rn++++ +   +++ + ++++e  ++ree    +++l++k+ ++q    e+K qqa++  ++++ ++k+  + l + +++ ++++++l  +e
  CTQ30544.1 136 LSGEEgQRNQRMQVYFSYFNQaRQETIAELKKTREEMAvqKSMLEEKQSQQQTlvYEQKAQQAKL--EQARNERKKTLSGLESSIQQGQQQLSELRANE 232
                 99765055555666666676615566666666677665888899999998886225777777666..4444444444455569**************** PP

     Taxilin 212 kelkeql 218
                 + l+ ++
  CTQ30544.1 233 SRLRGRI 239
                 ***9876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.84
     Taxilin 171 Klqqadallkeeqekkkrekeyllkeakeltkkvkalketek 212
                 +++qa+a +k++  +++r+++++  + +e  +k  + k te+
  CTQ30544.1 238 RIAQAEAAAKARADREARDAQAVRDRQQEASRKGTTYKPTES 279
                 567888888888888888888877777777777777776665 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.7    0.0011       1.3      48     116 ..      37     108 ..      29     115 .. 0.77
   2 ?    2.7   4.6     0.097   1.2e+02      42     114 ..     157     229 ..     146     248 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0011
     DUF1664  48 kqleqvseslaatkrhLssrid...rvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesk 116
                  ql+++++++aa +r ++++ +   ++ ++l++q+e++++ ++++ e ++ l++++++++++++a  +le +
  CTQ30544.1  37 DQLKSIQADIAARQRAIKQQQQqraSLLAQLKAQEEAIAAAARKLRETQDSLNQLNKQIDEMNAALAKLERQ 108
                 688888888888888776655411157788888889999999999999999999999999999999999876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.097
     DUF1664  42 avesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegle 114
                 a ++   +l++  e++a +k  L+++  + ++ + eqk+ ++++++  +e ++ ls +++ +++ ++  ++l 
  CTQ30544.1 157 ARQETIAELKKTREEMAVQKSMLEEKQSQQQTLVYEQKAQQAKLEQARNERKKTLSGLESSIQQGQQQLSELR 229
                 5555556677777777777777776666666666666666666666666666666666666665555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3734  (0.208266); expected 358.6 (0.02)
Passed bias filter:                      981  (0.0547158); expected 358.6 (0.02)
Passed Vit filter:                       235  (0.0131073); expected 17.9 (0.001)
Passed Fwd filter:                       104  (0.00580066); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.45u 0.37s 00:00:01.81 Elapsed: 00:00:00.55
# Mc/sec: 2300.17
//
Query:       CTQ30545.1  [L=315]
Description: putative polysaccharide deacetylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-77  257.3   0.3    8.8e-77  257.1   0.3    1.1  1  Polysacc_deac_2  Divergent polysaccharide deacetylase
  ------ inclusion threshold ------
        0.1   12.0   0.0       0.15   11.5   0.0    1.2  1  Peptidase_S11    D-alanyl-D-alanine carboxypeptidase


Domain annotation for each model (and alignments):
>> Polysacc_deac_2  Divergent polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.1   0.3   9.8e-81   8.8e-77       1     213 []      28     238 ..      28     238 .. 0.98

  Alignments for each domain:
  == domain 1  score: 257.1 bits;  conditional E-value: 9.8e-81
                      EEEEEETSHHCCHHHHHCSSTTCEEEEETTSTTHHHHHHHHHHCT-EEEEEEEE--TTTTT---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEE CS
  Polysacc_deac_2   1 ivIdDlGsnaktaeallalpapvtlAilPyaphskelaeaaraaghevllhlPmepksypkdpgpgaLlvsmseeeiekrleaalsrvpgavgv 94 
                      ivIdD+G++ +t++++lalpa +++A+lP+aph++e+a +a+++ghevl+hlPm p+s+ + +++++L+ +ms eeie+ +++a  +vp+avg+
       CTQ30545.1  28 IVIDDFGYRPQTENQVLALPATISVAVLPNAPHAREMATKAHNQGHEVLIHLPMAPLSK-QPLEKDTLRPEMSSEEIERIIREAYGKVPYAVGL 120
                      9*********************************************************6.68******************************** PP

                      EEEE-CCHHC-HHHHHHHHHHHHHTT-EEEE-S--TT-SHHHHHHHCT--EEE-SEETTSS-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCCH CS
  Polysacc_deac_2  95 nnhmGskftedeeameavleelkergllflDsrtsaksvaakvakelgvpvaerdvfLDnetdeaairkqlkklaklakkkGsaiaighprpet 188
                      nnhmGs++t++   m++v+++l++++l+flDs t+ +++a ++a+ +gv+v++r+vfLD++++ea+ir+q++++++la+++Gsaiaighp+p t
       CTQ30545.1 121 NNHMGSAMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQAMRAAQGTGVKVIKRKVFLDDTQNEADIRNQFNRAIALARRNGSAIAIGHPHPTT 214
                      ************************************************************888******************************* PP

                      HHHHHHHHHHHHHCTEEE--HHHH- CS
  Polysacc_deac_2 189 ieaLkewlpeleaegielvpvsall 213
                      +++L++++ +l  + i+lv +s+ll
       CTQ30545.1 215 VRVLQQMVYNLPPD-ITLVRPSSLL 238
                      *************8.*******985 PP

>> Peptidase_S11  D-alanyl-D-alanine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.7e-05      0.15      21     113 ..     109     208 ..      96     217 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.7e-05
                    TTTTEEEEEESTTS-BE-GGGHHHHHHHHHHHHHHTTSS-TTSEEE--GGGHGCCS.....GTTSSTTS-TTT-E..EEHHHHHHHHHCC--HHHH CS
  Peptidase_S11  21 antGkvLyeknadevveiASltKlmTaylvlealkkgklkeddkvtisedayalgn.....nkevsniflkkgsk..vsvkdLlegllvssgNdAa 109
                     + Gkv y+   ++++  A  + l  +  v++al++ +l   d vti+++ +++       +    ++fl+  ++    +++++++++++  N  a
     CTQ30545.1 109 EAYGKVPYAVGLNNHMGSAMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQAMRAAqgtgvKVIKRKVFLDDTQNeaDIRNQFNRAIALARRNGSA 204
                    567999999999999999999999*************************99988763333333344566654433103466788888888888888 PP

                    HHHH CS
  Peptidase_S11 110 valA 113
                    +a+ 
     CTQ30545.1 205 IAIG 208
                    8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2434.24
//
Query:       CTQ30546.1  [L=262]
Description: putative glycosyl transferase, family 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-15   57.4   0.0    2.2e-15   56.9   0.0    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
      8e-08   32.7   0.1    1.5e-07   31.9   0.1    1.5  1  Glyco_tranf_2_4  Glycosyl transferase family 2
    4.9e-05   23.3   0.0    6.5e-05   22.9   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
  ------ inclusion threshold ------
       0.12   11.8   0.0       0.18   11.3   0.0    1.2  1  Glyco_tranf_2_2  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0     5e-19   2.2e-15       1     100 [.       5      94 ..       5     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 5e-19
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      sv+  t+N + +l e+l  ll+      +e+ivvD gStDetv+i++++     +++v ++  + ++++ +n ++  a++d++l++D+D + d 
       CTQ30546.1   5 SVCLLTCNSARLLMEVLPPLLKV----ADECIVVDSGSTDETVAICQQF-----GLTVHHHAYK-AHGAQMNYAIGLASHDWVLCMDSDEILDN 88 
                      89999******************....**********************.....9*******99.****************************9 PP

                      THHHHH CS
  Glycos_transf_2  95 dwlekl 100
                      d +  +
       CTQ30546.1  89 DVVAAI 94 
                      977654 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.1   3.2e-11   1.5e-07       2      89 ..      12      91 ..      11      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 3.2e-11
  Glyco_tranf_2_4  2 neadiLpeflahhlalgfdrilvydndstDgtrailkelpevkllhvdksyederrqvellkallaryaeadwvlvvDaDEflvvpds 89
                     n a +L e+l  +l++ +d+++v+d +stD+t ai+++     l  ++++y+    q+++   l+ +    dwvl +D+DE+l ++  
       CTQ30546.1 12 NSARLLMEVLPPLLKV-ADECIVVDSGSTDETVAICQQ---FGLTVHHHAYKAHGAQMNYAIGLASH----DWVLCMDSDEILDNDVV 91
                     6777888888888999.9*******************9...78999999999877888887777744....************99875 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.5e-08   6.5e-05      12     112 ..      12      97 ..       3     130 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.5e-08
  Glyco_tranf_2_3  12 needvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDdDtvvePdtl 105
                      n ++ l evl  ll+    ++e +vv+ +s++et++ +++    ++ + v+  + ++     +    +n a+  +++d+vl +D+D +++ d++
       CTQ30546.1  12 NSARLLMEVLPPLLK---VADECIVVDSGSTDETVAICQQ----FGLT-VH-HHAYK-----AHGAQMNYAIGLASHDWVLCMDSDEILDNDVV 91 
                      555556666666665...47999***************99....6552.33.23344.....555689************************97 PP

  Glyco_tranf_2_3 106 krllqff 112
                      ++  q++
       CTQ30546.1  92 AA-IQAL 97 
                      76.4444 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     4e-05      0.18      31     104 ..      30      96 ..       6     103 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4e-05
  Glyco_tranf_2_2  31 elivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfissDkfekilk 104
                      e ivvd gS+++++   +++    ++  +k         +a  N  +  a  d vl +D+D     D +++i  
       CTQ30546.1  30 ECIVVDSGSTDETVAICQQFGLTVHHHAYKA-------HGAQMNYAIGLASHDWVLCMDSDEILDNDVVAAIQA 96 
                      78**********8776666655555444343.......4888999999999***********999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2038.28
//
Query:       CTQ30547.1  [L=341]
Description: threonine 3-dehydrogenase, NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-32  110.0   2.0    1.1e-31  108.9   2.0    1.6  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    3.2e-27   95.1   0.1    5.3e-27   94.4   0.1    1.3  1  ADH_zinc_N       Zinc-binding dehydrogenase
    5.6e-08   32.5   0.1    1.4e-07   31.2   0.1    1.6  1  Glu_dehyd_C      Glucose dehydrogenase C-terminus
    3.1e-06   28.3   0.0    6.4e-06   27.3   0.0    1.5  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
    0.00018   20.9   0.4    0.00027   20.3   0.4    1.2  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
      0.011   15.1   0.2      0.015   14.5   0.2    1.2  1  FAD_binding_3    FAD binding domain
      0.019   13.7   0.3      0.026   13.3   0.3    1.1  1  HI0933_like      HI0933-like protein
      0.029   13.6   0.0       0.04   13.2   0.0    1.2  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      0.039   13.3   1.7      0.053   12.9   1.7    1.1  1  FAD_oxidored     FAD dependent oxidoreductase
      0.053   13.1   0.1       0.09   12.3   0.1    1.3  1  MTS              Methyltransferase small domain
      0.054   12.6   0.3      0.071   12.2   0.3    1.1  1  FAD_binding_2    FAD binding domain
      0.077   12.2   0.1       0.12   11.6   0.1    1.2  1  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
       0.11   13.1   0.4       0.26   11.8   0.4    1.7  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
       0.12   13.1   0.0       0.23   12.2   0.0    1.5  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   2.0   8.4e-35   1.1e-31       2     108 ..      26     134 ..      25     135 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 8.4e-35
                 TEEEEEEEEEEE-HHHHHHHTTS..TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkgg..kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeenlCeeakllgvsldGgfaey 98 
                 +++lik++ ++iCg+D+hi++ +  ++ + + p+++GHE vGev+ +g+ev+++k+GdrV  e +i+cg+C++C+ g+++lC++   +gv+++G+faey
  CTQ30547.1  26 NDLLIKIRKTAICGTDVHIYNWDewSQKTIPVPMVVGHEYVGEVVGIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRPGCFAEY 124
                 689******************997777888999****************************************************************** PP

                 EEECGGGEEE CS
       ADH_N  99 vvvpekklvk 108
                 +v+p+ +++k
  CTQ30547.1 125 LVIPAFNAFK 134
                 ****988776 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.1   4.1e-30   5.3e-27       1     129 [.     174     303 ..     174     304 .. 0.96

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 4.1e-30
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEET.TTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadeviny.keadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeef 97 
                 ++G++a ++Ak+ Ga +v+ +d++e +lela+k+G+++++n  ke +l++ ++el  +eg+dv +e++G++ ++++ l+ +++gGr+++ G++  + ++
  CTQ30547.1 174 PIGVMAAAVAKHVGArNVVITDVNEYRLELARKMGVTRAVNVaKE-NLNDVMAELGMTEGFDVGLEMSGAPPAFRSMLDTMNHGGRIAMLGIPPSDMSI 271
                 79****************************************444.**********************************************888888* PP

                 EHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  98 dlrnlllkeksilGsllgslreefkealdlla 129
                 d+ ++++k + i+G+ +  + e+++++ +l++
  CTQ30547.1 272 DWTKVIFKGLFIKGIYGREMFETWYKMAALIQ 303
                 **************************999875 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1   1.1e-10   1.4e-07      20     145 ..     153     276 ..     149     339 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.1e-10
  Glu_dehyd_C  20 aeasrsafewepesalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatY.vdsretpvdeipe...aseemdlvvEaTGsakh 113
                  a+++  +f+   e +lv GaG++G++a+a+ ++   g  +v +++    ++ +++l +++G t  v+ ++++++++ +   ++e +d+ +E  G++++
   CTQ30547.1 153 AVHTALSFDLVGEDVLVSGAGPIGVMAAAVAKH--VGARNVVITD---VNEYRLELARKMGVTRaVNVAKENLNDVMAelgMTEGFDVGLEMSGAPPA 245
                  5567778999999**************777664..6777776655...567799*******995367777777777652226899************* PP

  Glu_dehyd_C 114 afeaiealapnGvaaLlGvpedsevevdggel 145
                      ++ ++  G +a+lG+p +  +++d  ++
   CTQ30547.1 246 FRSMLDTMNHGGRIAMLGIPPSD-MSIDWTKV 276
                  *******************9775.67776554 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0     5e-09   6.4e-06      17     133 .]     227     338 ..     207     338 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 5e-09
                   HH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH.----EEEEEEG CS
  ADH_zinc_N_2  17 atggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGk.lrpvvdrvfpl 112
                       eg+Dv l++ g + +++  l+ +++gGr+ ++g p  s+   +++k   ++ +    +  ++++  +    ++aali++G  l p ++++f++
    CTQ30547.1 227 LGMTEGFDVGLEMSGAPPAFRSMLDTMNHGGRIAMLGIP-PSDMSIDWTKVIFKGLFIKGIYG-REMF--ET-WYKMAALIQSGLdLSPIITHRFGI 318
                   333489*********555559999***888****99954.35555555553433333333333.4444..44.99*********98*********** PP

                   GGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2 113 eeaaeAhrylesgrarGKiVl 133
                   ++ ++ +++++sg+  GK+Vl
    CTQ30547.1 319 DDFQKGFDAMRSGQ-SGKVVL 338
                   *************8.59**98 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.4   2.1e-07   0.00027      30      82 ..     166     220 ..     161     256 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.1e-07
                  EEEEESTSHHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTTC.ECEEHCHHH CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglga.kVtvlDvrparleqleslgak.fvevlksqe 82 
                   vlv G+G  G+ A+a+ak +ga +V+++Dv++ rle  +++g +  v+v k++ 
   CTQ30547.1 166 DVLVSGAGPIGVMAAAVAKHVGArNVVITDVNEYRLELARKMGVTrAVNVAKENL 220
                  599*******************956*************99977540355544444 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   1.2e-05     0.015       3      34 ..     166     197 ..     165     234 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-05
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    dVl+ GaGp G+m+a + +  G r+v+++  +
     CTQ30547.1 166 DVLVSGAGPIGVMAAAVAKHVGARNVVITDVN 197
                    8**************************98665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3     2e-05     0.026       2      31 ..     166     195 ..     165     220 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-S CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllek 31 
                  dv+v G+G+ G+maA+ a++ g+r +++  
   CTQ30547.1 166 DVLVSGAGPIGVMAAAVAKHVGARNVVITD 195
                  899***************999887665543 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.1e-05      0.04     135     176 ..     157     199 ..     119     228 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.1e-05
                  HHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-E.EEEEESSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
  Pyr_redox_2 135 alklkllpkrivvvGgGyiGvElAaalaklgke.vtlveardr 176
                  al+ +l+ ++++v G+G+iGv  Aa+++ +g++ v++ + ++ 
   CTQ30547.1 157 ALSFDLVGEDVLVSGAGPIGVMAAAVAKHVGARnVVITDVNEY 199
                  5666677799********************9985666555544 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.7   4.1e-05     0.053       1      29 [.     166     194 ..     166     199 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.1e-05
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLve 29 
                   Dv+V G+gp Gv+AA  A+  Ga+ +++ 
    CTQ30547.1 166 DVLVSGAGPIGVMAAAVAKHVGARNVVIT 194
                   9**********************977775 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     7e-05      0.09      38      93 ..     170     227 ..     154     237 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7e-05
                 ET-T.TSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTS CS
         MTS  38 lGcG.aGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvleev 93 
                  G+G +Gv++aa+ak+    +v+++dv+ + le+a++   + +++ ++   +dv++e+
  CTQ30547.1 170 SGAGpIGVMAAAVAKHVGARNVVITDVNEYRLELARKMGVTRAVNvAKENLNDVMAEL 227
                 566656888999999999999***************9888888876666777777665 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   5.5e-05     0.071       1      73 [.     166     236 ..     166     258 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.5e-05
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHT CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkal 73 
                    Dv+V G+G  G +AA+ a++ G++ +v++ ++e ++++a   G   av+  +  ++++    el +t+ + ++
     CTQ30547.1 166 DVLVSGAGPIGVMAAAVAKHVGARNVVITDVNEYRLELARKMGVTRAVNVAKE-NLND-VMAELGMTEGFDVG 236
                    9**********************999****9999*****99999999984443.2222.23555555555555 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   9.3e-05      0.12       3      28 ..     170     195 ..     168     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.3e-05
  Pyr_redox_3   3 iGaGPaGlaaaielkkagledylilE 28 
                   GaGP+G+ aa  +k++g  +++i +
   CTQ30547.1 170 SGAGPIGVMAAAVAKHVGARNVVITD 195
                  5******************9998865 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4   0.00021      0.26       2      32 ..     167     197 ..     166     218 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00021
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversd 32 
                 v+v G+G ig+++A+++++ g++  v+   +
  CTQ30547.1 167 VLVSGAGPIGVMAAAVAKHVGARNVVITDVN 197
                 89*******************9888887655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00018      0.23       1      51 [.     167     216 ..     167     255 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00018
                      EEEET-TT.SHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEE CS
  Methyltransf_25   1 vLdlGcGt.GrltlalakrlgkakvtgvDiseemleaareraeeeglnvefv 51 
                      vL  G+G+ G +++a+ak++g+ +v+ +D++e  le ar+    + +  ++ 
       CTQ30547.1 167 VLVSGAGPiGVMAAAVAKHVGARNVVITDVNEYRLELARKMGVTRAV--NVA 216
                      56667777699****************************98865543..443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2788.84
//
Query:       CTQ30548.1  [L=397]
Description: glycine C-acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-78  264.4   0.0    1.9e-78  264.2   0.0    1.0  1  Aminotran_1_2    Aminotransferase class I and II
    8.8e-05   22.0   0.1    0.00031   20.2   0.1    1.9  2  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    0.00015   20.8   0.0    0.00055   19.0   0.0    1.7  2  Aminotran_5      Aminotransferase class-V
     0.0013   17.4   0.0     0.0059   15.2   0.0    2.0  1  SHMT             Serine hydroxymethyltransferase
      0.008   15.5   0.3      0.021   14.1   0.2    1.5  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
      0.021   14.7   0.0      0.048   13.6   0.0    1.6  1  HATPase_c_5      GHKL domain
       0.12   11.0   0.0       0.25   10.0   0.0    1.5  1  OKR_DC_1         Orn/Lys/Arg decarboxylase, major domain
       0.16   10.5   0.0       0.25    9.8   0.0    1.2  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.2   0.0   8.7e-82   1.9e-78       2     363 .]      42     386 ..      41     386 .. 0.98

  Alignments for each domain:
  == domain 1  score: 264.2 bits;  conditional E-value: 8.7e-82
                    EEEESSSSSTTSTTSSHHHHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgde 95 
                    +vin+++n+ylg++++p+l ++ak   +  g+++ + + ++g++d +++le++la+flg         e+a++++s+++a+  ++++ll   p+d+
     CTQ30548.1  42 HVINFCANNYLGLANHPELIAAAKSGMDshGFGMASVRFICGTQDTHKQLEKKLADFLG--------MEDAILYSSCFDANGGLFETLLG--PEDA 127
                    79*********************************************************........**********************9..**** PP

                    EEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTT CS
  Aminotran_1_2  96 ilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYa 191
                    i+++++++as+++++rl++++ +ry+       ++d+++le+ lkea e  +++ +i++ ++++++G++a+l+ +++l   a+ky +l++vD+ +a
     CTQ30548.1 128 IISDALNHASIIDGVRLCKAKRFRYA-------NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLQGVCDL---ADKYDALVMVDDSHA 213
                    **************************.......9********************************************...*************** PP

                    TCBSSSSHTHHH.HGGSTTSTTEEEEEESSSTT.SSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 192 gfvfgsldavat.ranveeepnllivgslsKaf.GlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrr 285
                    ++  g+ +  +  +++v+ +++ +i+g+l+Ka+ G+ G   Gy+++ ++vv++lr+ srp+l+s++l++a++aa  ++l++ +e  + r+rl++++
     CTQ30548.1 214 VGFVGENGRGSHeYCDVMGRVD-IITGTLGKALgGASG---GYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEEGADLRDRLWANA 305
                    *****87444447*********.**********78999...******************************************************* PP

                    HHHHHHHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS...TTEEEEEC.TTS-HHHHHHHHHHH CS
  Aminotran_1_2 286 kelrdeLaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftv...pgrlRitv.Aglteeeleelveal 363
                    + +r++++++g++  + +++++++++++a  a+ ++++L++e g+yvt + ++ v   ++r+R  + A++t+e++e++vea+
     CTQ30548.1 306 RLFREKMTAAGFTLAGADHAIIPVMLGEAVVAQNFARELQKE-GIYVTGFFYPVVpkgQARIRTQMsAAHTPEQIERAVEAF 386
                    ******************************************.*************9999*******************985 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   1.4e-07   0.00031      22     151 ..      85     216 ..      75     232 .. 0.82
   2 ?   -1.6   0.0      0.59   1.3e+03     282     312 ..     331     358 ..     289     388 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.4e-07
                      SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEE.EE-B-TTTSSB-GGGCGGG....--T CS
  DegT_DnrJ_EryC1  22 gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpv.fvDvdpdtynidpaaieaa....ite 110
                       ++ +++Ek++a++lg++ ai  ss+ +A+  + + l +gp+d +I  +l+ ++ +  v+ + ak   +++ d + +    +++++a    +  
       CTQ30548.1  85 QDTHKQLEKKLADFLGMEDAILYSSCFDANGGLFETL-LGPEDAIISDALNHASIIDGVRLCKAKRFrYANNDMQELEARLKEAREAgarhVLI 177
                      67889************************99777765.8999**********************975377777777777777776662222444 PP

                      TEEEEEEB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT- CS
  DegT_DnrJ_EryC1 111 rtkaIlpVhlyGqvadmdalkaiaakhglkvieDaAhAlGa 151
                       t +++   + G +a+++ + ++a+k++  v+ D +hA+G 
       CTQ30548.1 178 ATDGVF--SMDGVIANLQGVCDLADKYDALVMVDDSHAVGF 216
                      455555..578****************************95 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.59
                      EHCCHHHCHHHHHHHHHHCCEE-B-SGSCHG CS
  DegT_DnrJ_EryC1 282 veeeaevkrdelvealkeegigtrvhypnpl 312
                      + e   v  ++++++l++egi ++ +++ p+
       CTQ30548.1 331 LGEA--VVAQNFARELQKEGIYVTGFFY-PV 358
                      4433..5677788888888887666663.33 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.4e-07   0.00055      43     181 ..      86     215 ..      76     217 .. 0.78
   2 ?   -1.3   0.0      0.36     8e+02     276     335 ..     297     351 ..     241     353 .. 0.53

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.4e-07
                  HHHHHHHHHHHHHHT-STGGGEEEESSHHHHHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBE..GGGHHHH--T CS
  Aminotran_5  43 kaveearekvaelinaeseeeiiftsGtteainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeld..ldelekllne 138
                  +  ++ ++k+a++++ e+   i++ s++ +a+     +l   l p+d i+  +++h + +   ++l+k++      +  ++ +el+  l+e++++   
   CTQ30548.1  86 DTHKQLEKKLADFLGMED--AILY-SSCFDANGGLFETL---LGPEDAIISDALNHASII-DGVRLCKAKR---FRYANNDMQELEarLKEAREA-GA 172
                  566788999999999996..5555.55666888888888...9*************9999.6666665543...444556677777224444333.47 PP

                  TEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTT CS
  Aminotran_5 139 ktklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavg 181
                  +  l+a   v ++ G+i  ++ +++la k++alv+vD + avg
   CTQ30548.1 173 RHVLIATDGVFSMDGVIANLQGVCDLADKYDALVMVDDSHAVG 215
                  778889999****************************998876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.36
                  HHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEE.TTCSHHHHHHHHHHTTEEE CS
  Aminotran_5 276 iekhekelaeyllerlkslpgvrlygpdkaerrasivsfnf.kgvhaedvatlLdeegIav 335
                   + +  + a   +e++ + + +         ++++i+ + + + v a+++a+ L++egI v
   CTQ30548.1 297 LRDRLWANARLFREKMTAAGFTLA------GADHAIIPVMLgEAVVAQNFARELQKEGIYV 351
                  334444444444444444444433......4677777777766777778888888888776 PP

>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.6e-06    0.0059     169     251 ..     172     262 ..     105     352 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.6e-06
                 --SEEEEE-SST-S...---HHHHHHHHHHTT-EEEEE-GGGHHHHHTT.....SS--GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEE CS
        SHMT 169 kPklivaGtsaysr...lidyarlreiadevgayllvdmahiaGlvaag.....vipsPfeyadvvtttthktlrGprgglillrkgvksv 251
                   ++++a    +s    + + + + ++ad+ +a ++vd +h  G+v  +      + + +   d++t t  k+l G+ gg   +rk v + 
  CTQ30548.1 172 ARHVLIATDGVFSMdgvIANLQGVCDLADKYDALVMVDDSHAVGFVGENgrgshEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEW 262
                 34566776666654111345556667899*****************86511111556667778899***************9999766543 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   9.6e-06     0.021      29     224 ..      83     268 ..      80     332 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 9.6e-06
                      T--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S- CS
  Beta_elim_lyase  29 gedktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikevg 122
                      g+  t ++Le+++a+ +g+e a+   +   An  l+++ll +++++i +  +h         + + gv+l ++k  +  + d+++lea +ke  
       CTQ30548.1  83 GTQDTHKQLEKKLADFLGMEDAILYSSCFDANGGLFETLLGPEDAIISDALNHA--------SIIDGVRLCKAKRFRYANNDMQELEARLKEAR 168
                      56678899********************************99988877777764........567889888888888899999********966 PP

                      TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHH...TTSSEEEEESSSTT--SS-EEEEE-HH CS
  Beta_elim_lyase 123 aheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemf...syvDsvtmslkKdllanvGgvlafrdd 213
                      + +    +++ t  + ++ G    +++l+ v ++a+ky+  +++D    +  + + g   +e++     vD++t  l K l+   Gg  a r++
       CTQ30548.1 169 E-AGARHVLIATDGVFSMDGV---IANLQGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCdvmGRVDIITGTLGKALGGASGGYTAARKE 258
                      6.3444444444455555554...589999***************9988888877777777777433558999999999999999999999888 PP

                      ....HHHHHHH CS
  Beta_elim_lyase 214 eledylaerve 224
                         + l++r +
       CTQ30548.1 259 -VVEWLRQRSR 268
                      .6556555544 PP

>> HATPase_c_5  GHKL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.1e-05     0.048      39      90 ..      40      94 ..      13     100 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
  HATPase_c_5 39 kksliisieNsyegek...kklesskskkeehGiGlksireivkkykgnlsieae 90
                 ++++i  + N+y g     + +   ks  + hG+G+ s+r i+ + + + ++e++
   CTQ30548.1 40 DSHVINFCANNYLGLAnhpELIAAAKSGMDSHGFGMASVRFICGTQDTHKQLEKK 94
                 4556666777776633232556688999***************999988777665 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00011      0.25     154     207 ..     158     213 ..     113     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
                 HHHHHHHHHSTTTGSESEEEEESS-T..TSEEE-HHHHHHHHTTSESEEEEE-TT- CS
    OKR_DC_1 154 etlkekikevpdakaprlavitnsTY..dGvlynakeivdkleklsdrilfDeAwv 207
                 + l+ ++ke  +a a + ++ t + +  dGv++n++ + d+++k++  +++D+ + 
  CTQ30548.1 158 QELEARLKEAREAGARHVLIATDGVFsmDGVIANLQGVCDLADKYDALVMVDDSHA 213
                 45777788877777745555566654449************************996 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00011      0.25      52     179 ..      86     215 ..      69     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00011
                      HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHH.HHHHHCCTTEEEEEEE CS
  Cys_Met_Meta_PP  52 ptrsvleeriaaLeggeaalavssGmaAiaaailallkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdle.elekaikentklvylE 144
                       t++ le+++a+  g e a+++ss   A    + +ll   d i+++   + +  + + +++k    ++   d+++le +l++a +   + v++ 
       CTQ30548.1  86 DTHKQLEKKLADFLGMEDAILYSSCFDANGGLFETLLGPEDAIISDALNHASIIDGV-RLCKAKRFRYANNDMQELEaRLKEAREAGARHVLIA 178
                      5999*************************8888888877777776655555555544.45555566777777776651567777779999**99 PP

                      SS-TTTT-..---HHHHHHHHHHTT-EEEEEGTTTHT CS
  Cys_Met_Meta_PP 145 tptnpllk..vvDiekiaklakkagvlvvvDntfasp 179
                      t +   ++  ++ ++ +++la k ++lv+vD + a +
       CTQ30548.1 179 TDGVFSMDgvIANLQGVCDLADKYDALVMVDDSHAVG 215
                      999888865589*******************988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 3198.66
//
Query:       CTQ30549.1  [L=310]
Description: ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-45  154.1   0.0    5.2e-45  153.8   0.0    1.1  1  Epimerase        NAD dependent epimerase/dehydratase family
    6.2e-22   78.4   0.0      9e-22   77.9   0.0    1.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    3.6e-12   45.9   0.0    5.1e-12   45.4   0.0    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    2.7e-09   36.6   0.0    6.1e-09   35.4   0.0    1.6  1  RmlD_sub_bind    RmlD substrate binding domain
    2.1e-05   23.8   0.0      0.008   15.4   0.0    2.4  2  NAD_binding_4    Male sterility protein
    4.8e-05   22.6   0.1      0.059   12.5   0.1    2.2  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
  ------ inclusion threshold ------
      0.068   13.1   0.2       0.23   11.3   0.2    1.9  1  KR               KR domain
       0.14   11.6   0.0       0.23   10.9   0.0    1.4  1  adh_short        short chain dehydrogenase
       0.23   10.8   0.2        2.8    7.2   0.4    2.0  2  ThiF             ThiF family


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.8   0.0   2.6e-48   5.2e-45       1     241 []       2     236 ..       2     236 .. 0.88

  Alignments for each domain:
  == domain 1  score: 153.8 bits;  conditional E-value: 2.6e-48
                 EEEETTTSHHHHHHHHHHHHCTSE.EEEEES-STTTTCHHCHHCEEEE--TT-HH.HHHHHH..HHH.T-SEEEE--S.---HHHHHHSHHHHHHHHTH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgye.vigldrlssasntarledlelveldltdrs.alerlf..kee.qpdavihlAa.vggvaassedpadfieknlq 93 
                 i+VtG++GfiGs++vkal++kg++ ++++d+l+++ ++ +l   +l  +d++d++  l +++  +e+ +++a++h +a  ++ ++   d ++++++n q
  CTQ30549.1   2 IIVTGGAGFIGSNIVKALNDKGITdILVVDNLKDGTKFVNLV--DLNIADYMDKEdFLIQIMagEEFgEIEAIFHEGAcSSTTEW---DGKYMMDNNYQ 95 
                 89********************777*******9999999988..5778888888853444441145589*******998888888...6677999**** PP

                 HHHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT-EEEEEEESEEESTTS-TTS.TTSHHHHHH CS
   Epimerase  94 gtlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgpl.kpnspYaaaKlageklveayaaqyglnaiilrlfnlyGprngege.vsrvipali 190
                 ++ +ll+++ ++++  +l++sS+++YG  ++    e+    ++ +p + Y+++K +++++v+++  + + +++ +r+fn+yGpr+g++  +++v ++l 
  CTQ30549.1  96 YSKELLHYCLEREI-PFLYASSAATYGGRTSD-FIESR---EYeQPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGsMASVAFHLN 189
                 **************.************88884.55555...7889***************************************555555********* PP

                 HHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHTT-STTEEEEES CS
   Epimerase 191 rkilegkqevtllgdgtalRdflyveDvaeaillvlehvdagdkgeiyniG 241
                 +++++g+ + ++ g+   +Rdf+yv Dva+++l++ e+   g   +i+n+G
  CTQ30549.1 190 TQLNNGESPKLFEGSDGFKRDFVYVGDVADVNLWFWEN---G-VSGIFNLG 236
                 *******77777778889********************...4.45799988 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   4.5e-25     9e-22       1     267 [.       3     255 ..       3     286 .. 0.85

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 4.5e-25
                    EEETTTSHHHHHHHHHHHHCT-CCEEE.EEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-.HHHHHHHHHHH...T-SEEEE--S---HHHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgi.vrrsssfntgriehlakdpkeeleenlklhkgDltD.ssslerllaev...qpdevynLAAqshVdvs 91 
                    ++TG+aGfiGs++++ L +kg + + + +++++ +++ ++  l                +D  D ++ l++++a     +++++++ +A s   + 
     CTQ30549.1   3 IVTGGAGFIGSNIVKALNDKGITDILVvDNLKDGTKFVNLVDL--------------NIADYMDkEDFLIQIMAGEefgEIEAIFHEGACSSTTE- 83 
                    59*******************8766550445555554444443..............345666634589999998845668899*******9876. PP

                    TTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTT CS
  GDP_Man_Dehyd  92 fekPeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhespr 187
                    ++  +y++++n     +LL  +    le+++ f+ aS++  YG  ++  ++ +   +P + Y+ +K   d  v+++  + + ++v  ++fn ++pr
     CTQ30549.1  84 WDG-KYMMDNNYQYSKELLHYC----LEREIPFLYASSAATYGGRTSDFIESREYEQPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPR 174
                    775.9***************99....557899*************999998888889*************************************** PP

                    S-TTSCCCHH.HHHHHHHHTTS-C-EECTTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCC CS
  GDP_Man_Dehyd 188 rgetfvtrki.travarialgkqevlylGnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelg 267
                     g++     +  +  ++ ++g+ ++l  G    kRd+ +v D++++   + +++ +  ++++tg+  s + +++++++ ++
     CTQ30549.1 175 EGHKGSMASVaFHLNTQLNNGESPKLFEGSDGFKRDFVYVGDVADVNLWFWENGVSGIFNLGTGRAESFQAVADATLAYHK 255
                    **99766655156677888999999999******************98899*****************9999998877665 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   2.5e-15   5.1e-12       1     224 [.       3     220 ..       3     223 .. 0.77

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 2.5e-15
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk.viegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrn 98 
                 +vtGgaGF+G+++vk+L + + + ++ v+D  ++ ++  +l  +n+++ + + D + +    e   ++++++h  ++  ++ +   + +m+ n++  ++
  CTQ30549.1   3 IVTGGAGFIGSNIVKALNDKG-ITDILVVDNLKDGTKFVNLVDLNIADyMDKEDFLIQIMAGEEFGEIEAIFHE-GACSSTTEWDGKYMMDNNYQYSKE 99 
                 69***************9999.7999999977666666778888888844466777777778888999*****9.6666666688888*********** PP

   3Beta_HSD  99 vleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagiyGegdkl......lvp 191
                 +l  c++ ++++l Y Ssa   g+  +  +++   E+ eye ++ ++y +sK l +++v +         ++   +  R   +yG+++        +  
  CTQ30549.1 100 LLHYCLEREIPFL-YASSAATYGG--RTSDFI---ESREYE-QPLNVYGYSKFLFDEYVRQILP-----EANSQIVGFRYFNVYGPREGHkgsmasVAF 186
                 **********975.**********..899999...666665.57899******99999986544.....223356899*******98754111111222 PP

   3Beta_HSD 192 llkqlaklg.lalfkigdeevlsdrvYvgNvawa 224
                  l++ +++g   ++  g++  + d+vYvg va++
  CTQ30549.1 187 HLNTQLNNGeSPKLFEGSDGFKRDFVYVGDVADV 220
                 2333444441446667888899*********986 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   3.1e-12   6.1e-09       3     155 ..       2     174 ..       1     193 [. 0.81

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 3.1e-12
                    EEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...........T--TTSHHHHHHHH.......HHH--SEEEE------HHHHHHSHHHHHHHHTH CS
  RmlD_sub_bind   3 ilvtGanGqlGseLakqlaeeglevlaltre...........eldltdaeavaell.......keakpdvvvnaAAytavDkaEseeeaayavnae 80 
                    i+vtG+ G +Gs+++k+l+ +g+  + +  +           +l+++d    +++l       +  + +++ + +A       E + +  +  n +
     CTQ30549.1   2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNlkdgtkfvnlvDLNIADYMDKEDFLiqimageEFGEIEAIFHEGACSS--TTEWDGKYMMDNNYQ 95 
                    89*******************9875555444578999999996666666555555545555533345679999999876..578999999999*** PP

                    HHHHHHHHHHHCT-EEEEEEEGGGS-S-TTS-B-TTS----SSHHHHHHHHHHHHHHH....H-SSEEEEEE-SEESSS CS
  RmlD_sub_bind  81 avealAeaaaavgalLihvStDyVFdGekkrpYeeddetsPlnvYGrtKlaGEqavla....agkkalivRtswvygek 155
                     +++l +++ ++++++++ S+   + G++++  e  +  +PlnvYG +K +  + v++    a+ +++ +R   vyg +
     CTQ30549.1  96 YSKELLHYCLEREIPFLYASSAATYGGRTSDFIESREYEQPLNVYGYSKFLFDEYVRQilpeANSQIVGFRYFNVYGPR 174
                    *********************************************************9666566666778888888864 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0028       5.6       1      18 [.       4      21 ..       4      39 .. 0.83
   2 !   15.4   0.0     4e-06     0.008      86     217 ..      67     183 ..      52     207 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0028
                   EE-TTSHHHHHHHHHHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLr 18
                   +TG+ GF+G+ +++ L +
     CTQ30549.1  4 VTGGAGFIGSNIVKALND 21
                   7************99855 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 4e-06
                    HH--EEEE--SS-S.ST.TSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHH CS
  NAD_binding_4  86 eevdviihsaAtvnfde.pykellrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsK 180
                     e+++i+h +A  + +e + k +++ N +  +e+l  + ++ +  ++l+ S+a+ +g r++                d  e ++ ++  n Y +sK
     CTQ30549.1  67 GEIEAIFHEGACSSTTEwDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYGGRTS----------------DFIESREYEQPLNVYGYSK 144
                    6899******9887777678889****************66.44.7******999999995................558889999999******* PP

                    HHHHHHHHHHHHHH---EEEEEE-EEE-..-SSST---T CS
  NAD_binding_4 181 alaEklvrearrrsglpvvivRpsiitg..esktGwing 217
                    +l ++ vr+   + + ++v +R  +++g  e  +G++ +
     CTQ30549.1 145 FLFDEYVRQILPEANSQIVGFRYFNVYGprEGHKGSMAS 183
                    *********999999999999999998876666666655 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1     3e-05     0.059       1      31 [.       2      32 ..       2      78 .. 0.87
   2 !    8.2   0.0    0.0006       1.2     133     175 ..     135     174 ..     128     198 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
                     EEEETTTSHHHHHHHHHHHHHB-SEEEEEES CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkkkpkkiiller 31
                     ++vtG++G iGs++v+ + +k ++ i+++++
       CTQ30549.1  2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN 32
                     79**************************997 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0006
                      S--SHHHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETTGT CS
  Polysacc_synt_2 133 nPtnvmGatKrlaekllqalakeseekktkfvvvRfGNVlgSr 175
                      +P nv+G +K l + ++ ++  e+   ++++v  R+ NV g r
       CTQ30549.1 135 QPLNVYGYSKFLFDEYVRQILPEA---NSQIVGFRYFNVYGPR 174
                      79**************99998888...7899999999998754 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00012      0.23       3      31 ..       2      30 ..       1     124 [. 0.94

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                EEEETTTSHHHHHHHHHHHHHHS-EEEEE CS
          KR  3 ylitGGlGgLGlelarwlaekgarhlvll 31
                 ++tGG+G +G  +++ l +kg + ++++
  CTQ30549.1  2 IIVTGGAGFIGSNIVKALNDKGITDILVV 30
                58********************9999876 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.23       3      39 ..       2      38 ..       1      74 [. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHH CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseeklee 39
                ++vtG+++ IG +i+k+l  +G++ ++v  + ++  +
  CTQ30549.1  2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK 38
                89*********************99886555555544 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.4    0.0014       2.8      25      50 ..       7      32 ..       2      42 .. 0.94
   2 ?    1.0   0.0      0.12   2.3e+02     121     147 ..      95     121 ..      89     162 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0014
                --SHHHHHHHHHHHHHTTTEEEEEES CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 25 GaGglGsellknLalsGvgkltlvDn 50
                GaG +Gs+++k+L   G+  + +vDn
  CTQ30549.1  7 GAGFIGSNIVKALNDKGITDILVVDN 32
                9************************7 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHT-EEEEEEEETTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 121 earrlvnracvkkgiplieagtlgfeg 147
                 +  + + ++c +++ip++ a+ ++++g
  CTQ30549.1  95 QYSKELLHYCLEREIPFLYASSAATYG 121
                 555667789*******99976555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 2596.52
//
Query:       CTQ30550.1  [L=352]
Description: ADP-heptose:LPS heptosyltransferase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-86  288.4   0.0    4.9e-86  288.1   0.0    1.1  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe
    0.00031   20.8   0.0      0.057   13.3   0.0    2.3  2  PS_pyruv_trans  Polysaccharide pyruvyl transferase


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.1   0.0   5.5e-90   4.9e-86       1     249 []      69     324 ..      69     324 .. 0.98

  Alignments for each domain:
  == domain 1  score: 288.1 bits;  conditional E-value: 5.5e-90
                     HHHHHHHTTTTT-SEEEE-S--SGGGHHHHHTT-SEEEEE-TTT-.TTT-TEEE---TTT--SHHHHHHHTTS-G......GGS-SS-------- CS
  Glyco_transf_9   1 rlrlakaLrekayDlvidlqgllkSAllvralkapvriGldeesrelaslfysrkvdkakgqhaVernraLfaqa......ldlpkpeskpelal 89 
                     r++l+++Lre++yD++++l++++kSAl+++++ +p r+G+++e+r +++l++ r +dk++++++Ver++aL+++        dlp+p ++p+l++
      CTQ30550.1  69 RRKLGHSLRERRYDRAYVLPNSFKSALVPFFANIPLRTGWRGEMR-YGLLNDARVLDKDAWPLMVERYVALAYDNgvmrcaKDLPQPLLWPQLQV 162
                     689******************************************.****************************999****************** PP

                     -HHHHHHHHHHTT--SSS-EEEEE---TT.GGGS--HHHHHHHHHHHHHTT-EEEE---GGGH..HHHHHTTS-HHHHTTEEE-TTTS-HHHHHH CS
  Glyco_transf_9  90 slkeraaaldaagllaerpyivflpgask.daKrWpeekyaelaealqekgyqvvLfgsaeae..eeeiaeriaagleekavnllgktsLeelaa 181
                     ++ e+++a++a++l+ +rp+++f+pga++ +aKrWp+++ya+la++l++ gyq++Lfgsa+++  ++ei  ++  ++++++ nl+g+t+Le+++ 
      CTQ30550.1 163 NEGEKSQACSAFNLSYDRPIVGFCPGAEFgPAKRWPHYHYAALAKKLIDDGYQIALFGSAKDNeaGKEIIAALSSEQQAWCRNLAGETQLEQAVI 257
                     **************************************************************9999***************************** PP

                     HHHTSSEEEEESSHHHHHHHHTT--EEEEESSS-TTSS----TTEEEEESS--.-------------- CS
  Glyco_transf_9 182 llakadlvvgnDSGlmHlAaAldrpviaLYgptdpkrtgplsksativsleeeaspelkkedslkkya 249
                     l+a +++vv+nDSGlmH+AaAldrp++aLYgp++p++t+pls++a++++l ++ +++++k d+++ y+
      CTQ30550.1 258 LIAACKAVVTNDSGLMHVAAALDRPLVALYGPSSPDFTPPLSHKARVIRLITG-YHKVRKGDAAEGYH 324
                     **************************************************999.99999999998875 PP

>> PS_pyruv_trans  Polysaccharide pyruvyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0021        18       3      28 ..      12      37 ..      11      47 .. 0.92
   2 !   13.3   0.0   6.3e-06     0.057     176     264 ..     183     268 ..     167     269 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0021
                    HHHHHHHHHHHHHHHTT-EEEEEESS CS
  PS_pyruv_trans  3 GDelilealvklLrelgpdaeiivlt 28
                    GD++++ +l + Lr ++p a i+v  
      CTQ30550.1 12 GDMMMSQSLYRTLRARYPQAIIDVMA 37
                    9*********************9975 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 6.3e-06
                     ---------SS--EE---SSS---HH...............................HH-TTS-HHHHHHHHHHHHHHHHHTSSEEEE- CS
  PS_pyruv_trans 176 kylrvakssekdledleellakvydlllekgarllllpivkkdglelddlyllllraaakkekvtildrfaspeellsliaradfvits 264
                     +  +  + +   ++++  ++a++ ++l+++g+++ l+  +k + ++ + + +l      ++ ++  l ++++ e+++ lia +++v+t+
      CTQ30550.1 183 VGFCPGAEFGPAKRWPHYHYAALAKKLIDDGYQIALFGSAKDNEAGKEIIAALS---SEQQAWCRNLAGETQLEQAVILIAACKAVVTN 268
                     4566666777789999******************99999999999999999999...9999**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2991.26
//
Query:       CTQ30551.1  [L=323]
Description: ADP-heptose:LPS heptosyl transferase I [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-78  261.1   0.4    1.1e-77  260.7   0.4    1.1  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe
  ------ inclusion threshold ------
      0.021   14.6   0.0       0.11   12.3   0.0    1.9  2  Thioredoxin_9   Thioredoxin
       0.12   11.2   0.0       0.17   10.7   0.0    1.2  1  Epimerase_2     UDP-N-acetylglucosamine 2-epimerase


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.7   0.4   1.9e-81   1.1e-77       2     234 ..      76     302 ..      75     311 .. 0.97

  Alignments for each domain:
  == domain 1  score: 260.7 bits;  conditional E-value: 1.9e-81
                     HHHHHHTTTTT-SEEEE-S--SGGGHHHHHTT-SEEEEE-TTT-...TTT-TEEE---TTT--SHHHHHHHTTS-GGGS-SS---------HHHH CS
  Glyco_transf_9   2 lrlakaLrekayDlvidlqgllkSAllvralkapvriGldeesr..elaslfysrkvdkakgqhaVernraLfaqaldlpkpeskpelalslker 94 
                      ++++a+++++yD++id+qgl+kSA+lv+ l+++v++G+d++++  +laslfy+r++++ak+qhaVer+r+Lfa++l+++kp++++++a+ +++ 
      CTQ30551.1  76 QAFREAVQAVKYDAIIDAQGLVKSAALVTRLAHGVKHGMDWQTArePLASLFYNRRHHIAKQQHAVERTRELFAKSLGYAKPQTQGDYAIARHFL 170
                     57899****************************************************************************************** PP

                     HHHHHHTT--SSS-EEEEE---TTGGGS--HHHHHHHHHHHHHTT-EEEE---GGGHHHHHHTTS-HHHHTTEEE-TTTS-HHHHHHHHHTSSEE CS
  Glyco_transf_9  95 aaaldaagllaerpyivflpgaskdaKrWpeekyaelaealqekgyqvvLfgsaeaeeeeiaeriaagleekavnllgktsLeelaallakadlv 189
                       +++aa      py+vfl+++++d+K+Wpe +++el++ l + g+ + L+++a++ ee++a+r+a+g e  +v++l+++sLe++a++la+a++v
      CTQ30551.1 171 LHEASAAA-----PYLVFLHATTRDDKHWPETRWQELLDLLADSGVHIKLPWGAPH-EEARAKRLAEGRE--YVEVLPRMSLEQVAQVLAGARAV 257
                     *******9.....*******************************************.***********88..*********************** PP

                     EEESSHHHHHHHHTT--EEEEESSS-TTSS----TTEEEEESS-- CS
  Glyco_transf_9 190 vgnDSGlmHlAaAldrpviaLYgptdpkrtgplsksativsleee 234
                     v++D+Gl+Hl+aAld+p+ +LYgptdp+ +g ++k++ iv+ e++
      CTQ30551.1 258 VSVDTGLSHLTAALDKPNFTLYGPTDPGLIGGYGKNQHIVRPENS 302
                     ****************************************97655 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.8e-05      0.11      44     102 ..       2      59 ..       1      73 [. 0.83
   2 ?   -0.7   0.0      0.18   1.1e+03      91     116 ..     170     196 ..     161     204 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
                    EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEE CS
  Thioredoxin_9  44 kilvltedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqyltngaraiPtli 102
                    ++l++ +   gD+ +++P+l  +a++ p+i +++++ +   ++  +  +  +r iP+ i
     CTQ30551.1   2 RVLIVKTSSMGDVLHTLPALTDAAQAIPGIRFDWVVEEGFAQI-PSWHKSVERVIPVAI 59 
                    7899999999************************998766554.445556777777776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.18
                    TT.-SS--SSEEEEE-TT--EEEEEES CS
  Thioredoxin_9  91 lt.ngaraiPtliildeegeelgvwge 116
                    l  + ++a P l++l +++++  +w e
     CTQ30551.1 170 LLhEASAAAPYLVFLHATTRDDKHWPE 196
                    444788999*******99999999965 PP

>> Epimerase_2  UDP-N-acetylglucosamine 2-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.9e-05      0.17     180     284 ..     176     278 ..     147     282 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.9e-05
                  SS-EEEEE---HHHHTSHHHHHHHHHHHHHHHHHH--EEEEE--..HHHHHHHHHHHHH-TTEEEE----HHHHHHHHHC-SEEEES-HHHHHHHHHC CS
  Epimerase_2 180 ekkyvlvtlHrrenedeperlkeilealkalakekdvevvvpvhnnprtrkrlleeleelenvtlieplgyldflsllknaklvltdSgGiqeEapsl 277
                      +lv lH ++  d++   +++ e+l+ la++  v++ +p+  +p+ ++r+++  e+ e v +++ +  ++  ++l+ a++v++   G+   +++l
   CTQ30551.1 176 AAAPYLVFLHATTRDDKHWPETRWQELLDLLADS-GVHIKLPWG-APHEEARAKRLAEGREYVEVLPRMSLEQVAQVLAGARAVVSVDTGLSHLTAAL 271
                  4556799**************************7.99999**99.9*******99888889************************9888888888888 PP

                  T--EEES CS
  Epimerase_2 278 gvpvvnl 284
                  ++p  +l
   CTQ30551.1 272 DKPNFTL 278
                  8887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2851.17
//
Query:       CTQ30552.1  [L=302]
Description: Lipopolysaccharide core biosynthesis protein RfaZ [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      0.001   18.8   0.0     0.0051   16.5   0.0    2.0  2  MAF_flag10  Protein of unknown function DUF115


Domain annotation for each model (and alignments):
>> MAF_flag10  Protein of unknown function DUF115
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.061   1.1e+03      15      36 ..      52      71 ..      43      77 .. 0.76
   2 !   16.5   0.0   2.8e-07    0.0051      98     167 ..     162     231 ..     139     235 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.061
  MAF_flag10 15 lkellnkfkgnkpaiivgaGPS 36
                l+ l+n+++g  ++++ ++GPS
  CTQ30552.1 52 LSALKNSMQG--EVLLTATGPS 71
                4556665555..999******9 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.8e-07
  MAF_flag10  98 vfasgvnpellkk.ykgpkiflvtgstqalelleeekneilfgGgsvantaldlAvklgfkeIiliGqDla 167
                 ++ + v  e++k+ y+++ ++++++  +   +++++ ++ +f  g+v   al+++++lgf++I++ G+D+ 
  CTQ30552.1 162 IYQPKVASEAIKRtYQQNAAMCFHPQRP-DICFSTDIRQGIFDAGTVVYWALQILAWLGFNTILVSGLDMT 231
                 5555555555554156666677777665.557767777789****************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.33
# Mc/sec: 2709.57
//
Query:       CTQ30553.1  [L=389]
Description: O-antigen polymerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-16   60.6   6.8    1.3e-16   60.6   6.8    3.8  4  Wzy_C     O-Antigen ligase
  ------ inclusion threshold ------
       0.01   16.1   5.2       0.01   16.1   5.2    3.4  3  TctB      Tripartite tricarboxylate transporter TctB family
      0.084   12.7   0.2       0.29   11.0   0.2    2.0  1  Flp_Fap   Flp/Fap pilin component


Domain annotation for each model (and alignments):
>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.4    0.0058        35       3      51 ..      20      77 ..      18      94 .. 0.70
   2 ?    1.4   0.4     0.036   2.1e+02      12      32 ..     116     136 ..      97     179 .. 0.69
   3 !   60.6   6.8   2.2e-20   1.3e-16       3     155 .]     191     323 ..     189     323 .. 0.91
   4 ?    1.3   0.4     0.038   2.3e+02      22      53 ..     321     357 ..     319     372 .. 0.47

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0058
       Wzy_C  3 lllsllalflstsRsgiigllvalivlliifykrri.........pfllllgilvgvi 51
                l+l + a+f   +R+  +  l +l++ll ++ ++ +          +  + ++++  i
  CTQ30553.1 20 LFLFFSAIFCMSTRTNNLLHLSILLLLLSLVRQENRqalagvlreQWQTWTLLAAFFI 77
                7899999999999997777766666666666666666999998886666666544333 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.036
       Wzy_C  12 lstsRsgiigllvalivllii 32 
                 + t R +++++++++ vl ++
  CTQ30553.1 116 GRTRRLAMLAVVGGITVLSLW 136
                 334455666665555555444 PP

  == domain 3  score: 60.6 bits;  conditional E-value: 2.2e-20
       Wzy_C   3 lllsllalflstsRsgiigllvalivlliifykrripfllllgilvgvilliilfvlstnletlknitkafgkldkkkgkdksgssRlyiwkralplik 101
                 ++++l++l+l++sR++ii+l++a++  l +++  r+   ll++++++v+++++l++     + l++           ++  ++++ Rl iw+++l+ + 
  CTQ30553.1 191 VVIMLVMLLLTQSRGPIIALVLAVGCTLHLHVFTRR--NLLIAAALAVLVALLLVMTPVGDMLLARF----------EELGTQSGLRLSIWHHTLSEMA 277
                 689*********************************..77777777777777777777777777765..........8999****************** PP

       Wzy_C 102 dspilGtGvfdfpqgdligkyyaydtpnivvdkaHNlyLqilvetGiiGlvlfl 155
                  +p+lG G        ++++   +++++++++ +H+ y+  l++ Gi+Gl+l+l
  CTQ30553.1 278 SQPWLGRG--------FSYELDFINYSGEHITTTHSVYMGALLKGGIVGLLLLL 323
                 ********........99*********************************985 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.038
       Wzy_C  22 llvalivlliifykrri......pfllllgilvgvill 53 
                 ll+a+i++ ++   r++      + ++l  +lv  ++ 
  CTQ30553.1 321 LLLAIIACGLWQAWRKRhtdsrySLAILFYALV-FMAS 357
                 566777777777766665655422222222222.2222 PP

>> TctB  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.1   5.2   1.7e-06      0.01      31     123 ..      18     136 ..       6     141 .. 0.68
   2 ?    5.1  11.3    0.0043        26      36     123 ..     169     243 ..     143     247 .. 0.70
   3 ?    3.4   0.7     0.014        86      34      85 ..     320     356 ..     296     384 .. 0.49

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.7e-06
        TctB  31 fPlllgvllall...........gllllv.aadgekeekearedwrkllklvlallaalllyalllepl.............Gfilatalflllll... 101
                 fPl l +  +++           ++lll+ +  +++++++ +   r+++ + + llaa+++y++l ++              G +l+ +l+l+ +l   
  CTQ30553.1  18 FPLFLFFSAIFCmstrtnnllhlSILLLLlSLVRQENRQALAGVLREQW-QTWTLLAAFFIYYALSNVWghtpqhidspithGVYLTGYLLLMTMLlrd 115
                 6655533333333455555555444444454556777788888999999.9999999*********9977777777888888*******7776666565 PP

        TctB 102 greerkwlkalilavvlallvy 123
                 g + r++  +++++ +++l ++
  CTQ30553.1 116 G-RTRRLAMLAVVGGITVLSLW 136
                 4.45666666666666666666 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0043
        TctB  36 gvllallgllllvaadgekeekearedwrkllklvlallaalllyallleplGfilatalflllll...greerkwlkalilavvlallvy 123
                 g++++++g+l l          e++++      ++ + ++++l+ +ll +  G i+a +l++  +l   + ++r++l a++lav++all++
  CTQ30553.1 169 GIGILICGML-LK---------EKASH------WLYLPVVIMLVMLLLTQSRGPIIALVLAVGCTLhlhVFTRRNLLIAAALAVLVALLLV 243
                 5555555222.22.........12122......3333344788889999999*******99977777651578899999999999999865 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.014
        TctB  34 llgvllallgllllvaadgekeekearedwrkllklvlallaalllyal.lle 85 
                 ll ++++++gl+ ++            ++  +   +  +   a+l+yal  + 
  CTQ30553.1 320 LLLLAIIACGLWQAW------------RKRHTDS-RYSL---AILFYALvFMA 356
                 222222222222222............1111112.3333...44444442333 PP

>> Flp_Fap  Flp/Fap pilin component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   4.9e-05      0.29      15      44 ..     229     260 ..     229     262 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.9e-05
     Flp_Fap  15 LIaaliAvvii..ayvttlgtaLktkFtkigt 44 
                 LIaa+ Av++   +++t +g+ L ++F+++gt
  CTQ30553.1 229 LIAAALAVLVAllLVMTPVGDMLLARFEELGT 260
                 89*****988777****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 3136.20
//
Query:       CTQ30554.1  [L=359]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-13   50.7   0.0    4.3e-13   49.1   0.0    1.8  2  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       0.1   1.8e+03     132     148 ..      63      79 ..      62      96 .. 0.86
   2 !   49.1   0.0   2.4e-17   4.3e-13       7     222 ..     105     322 ..      98     345 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.1
                     HHHHHHTT-EEEE---G CS
  Glyco_transf_9 132 aealqekgyqvvLfgsa 148
                     a++l e+gyqv ++ ++
      CTQ30554.1  63 ARILAERGYQVSVLTGP 79 
                     68999******998876 PP

  == domain 2  score: 49.1 bits;  conditional E-value: 2.4e-17
                     HTTTTT-SEEEE-S--SGGG...HHHHHTT-SEEEEE-TTT-....TTT-TEEE---TTT--SHHHHHHHTTS-GGGS-SS---------HHHHH CS
  Glyco_transf_9   7 aLrekayDlvidlqgllkSA...llvralkapvriGldeesr...elaslfysrkvdkakgqhaVernraLfaqaldlpkpeskpelalslkera 95 
                     +Lr+  +D+vid  +  +     ll+  l a+  iG+++e     ++++ f + + ++   + +V   ++Lf  + d p++   p  + ++++ a
      CTQ30554.1 105 TLRAAGFDAVIDFDDVTSYErfkLLAD-LRATSVIGFNKEPYklyDHSIAFFDGNSHISLRYKQV---VKLFGIVDDRPYHYHLPGCRHEREKVA 195
                     688888888888887654331113444.7788888888887644444444444444444333332...3455556999***************** PP

                     HHHHHTT--SSS-EEEEE---TTGGGS--HHHHHHHHHHHHHTT-EEEE---GGGHHHHHHTTS-HHHHTTEEE-TTTS-HHHHHHHHHTSSEEE CS
  Glyco_transf_9  96 aaldaagllaerpyivflpgaskdaKrWpeekyaelaealqekgyqvvLfgsaeaeeeeiaeriaagleekavnllgktsLeelaallakadlvv 190
                     + l++ag  +    i+++p +  ++K++   + a l+e+l+   y+v+++        e  +++  gl+  ++   +  +++++++++  +dlv+
      CTQ30554.1 196 RLLSQAG-EV-ELRIAINPFTASEDKDFCRHQVATLIERLHALPYRVCIVMVGRS---EKIRQL--GLD--MALYIADSTINSAVEVIRSCDLVI 281
                     ******9.44.489*********************************99887777...344444..344..456678889*************** PP

                     EESSHHHHHHHHTT--EEEEESSS-TTSS-.........-- CS
  Glyco_transf_9 191 gnDSGlmHlAaAldrpviaLYgptdpkrtg.........pl 222
                     ++D+ + H+A A d+p++a+Y + + k tg          +
      CTQ30554.1 282 TPDTSIVHIARAFDKPMVAVYNKRKLKNTGlpgyhiwapGY 322
                     ***********************999999976666666334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2720.33
//
Query:       CTQ30555.1  [L=320]
Description: Deacetylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.12   12.3   0.0       0.42   10.5   0.0    1.9  2  Polysacc_deac_1  Polysaccharide deacetylase


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.4e-05      0.42      49     123 ..      62     153 ..       6     154 .. 0.82
   2 ?   -1.1   0.0     0.093   1.7e+03     104     117 ..     240     253 ..     215     297 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.4e-05
                      HHHHHHHHTT.EEEEE--...............SS--.EGGGSHHHHHHHHHHHHHHHHHHHHS----EEE-GGGEE-HHHHHHHHHTT.EE CS
  Polysacc_deac_1  49 devremaasG.veignHt...............inhs.nlkrlseeevrreierakdalrkalgreprlfryPygsasatvlevarelgfay 123
                      + +r + a+G  e+g H                + h+ +l + s + +r+ ++ +++ l++ ++ +++  r+   ++++++ + + e+g+++
       CTQ30555.1  62 EFARDVIARGtAEVGMHLhawnspptepltaddWRHKpYLIEYSDAMMREKVDYMTRLLEDTFQTKMVSHRAGRWAFDERYARLLVEYGYQV 153
                      5689999*********995666666666666665555566999999*******************************************986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.093
                      GGGEE-HHHHHHHH CS
  Polysacc_deac_1 104 Pygsasatvlevar 117
                      P g   +t+ +v++
       CTQ30555.1 240 PMGGNVETMKKVVE 253
                      44444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2582.95
//
Query:       CTQ30556.1  [L=358]
Description: lipopolysaccharide core biosynthesis protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-53  180.6   0.0      4e-53  180.3   0.0    1.1  1  Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransfe
    9.2e-05   22.5   0.8     0.0063   16.5   0.2    2.2  2  Glyco_transf_4  Glycosyltransferase Family 4


Domain annotation for each model (and alignments):
>> Glyco_transf_9  Glycosyltransferase family 9 (heptosyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.3   0.0   4.5e-57     4e-53       2     238 ..      87     328 ..      86     337 .. 0.90

  Alignments for each domain:
  == domain 1  score: 180.3 bits;  conditional E-value: 4.5e-57
                     HHHHHHTTTTT-SEEEE-S--SGGGHHHHHTT-SEEEEE-TTT-.TTT-TEEE---TTT....--SHHHHHHHTTS-GGGS-SS---------HH CS
  Glyco_transf_9   2 lrlakaLrekayDlvidlqgllkSAllvralkapvriGldeesrelaslfysrkvdkak....gqhaVernraLfaqaldlpkpeskpelalslk 92 
                     ++l+++Lr+++yD+v++l +++ SA++++ ++a  riG+d  +r + ++ y ++  +      + h V++n++++a   +l+ ++   +++ s++
      CTQ30556.1  87 WQLIQTLRQQRYDMVLNLADQWPSAVISKLTGAATRIGFDFPKRRHPVWRYCHTALASTqqhnQLHTVQQNLSILAPL-GLQLNDAPARMGYSEA 180
                     689*************************************999978788777765443311136789******99985.6666667777888888 PP

                     HHHHHHHHTT--SSS-EEEEE---TTGGGS--HHHHHHHHHHHHHTT-EEEE---GGGHHHHHHTTS-HHHHTT.EEE-TTTS-HHHHHHHHHTS CS
  Glyco_transf_9  93 eraaaldaagllaerpyivflpgaskdaKrWpeekyaelaealqekgyqvvLfgsaeaeeeeiaeriaagleek.avnllgktsLeelaallaka 186
                     + aa++  ++  +  +yiv++p++++ +K+W e++ ++l++al+ +gy+vvL+++++a+e+ +++ i ag+ +     l+g+++L +laa++++a
      CTQ30556.1 181 DWAASRALLPEDFREHYIVIQPTSRWFFKCWREDRMSALINALSAEGYAVVLTSGPDAREKKMVDTIIAGCPQArLHSLAGQLTLRQLAAVIDHA 275
                     8888888888889**********************************************************9888999***************** PP

                     SEEEEESSHHHHHHHHTT--EEEEESSS-TTSS----TTEEEEES.S--.--- CS
  Glyco_transf_9 187 dlvvgnDSGlmHlAaAldrpviaLYgptdpkrtgplsksativsl.eeeaspe 238
                     +l++g+DS +mH+AaAl++p++aL+gp++ ++++p++++ +++++ + ++ p+
      CTQ30556.1 276 RLFIGVDSVPMHMAAALGTPLVALFGPSKLTFWRPWQAKGEVIWAgDFGPLPD 328
                     ********************************************988888776 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2     7e-07    0.0063       8     109 ..      34     148 ..      31     180 .. 0.76
   2 !    4.4   0.0    0.0037        33      10      91 ..     218     299 ..     213     311 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7e-07
  Glyco_transf_4   8 vleLaraLarrGheVtvvtpgddgpleeevelvvrvprv.plpllkrllrslaflrrlrrllkrekpDvv..Hahspaalgaallalrr...... 93 
                     ++ L ++ +++ ++V ++  ++d  +++   +++ + +  +++++++ ++ l + ++l + l+++++D v   a ++++++ + l  ++      
      CTQ30556.1  34 IHALKQQYPAASVDVLLYEETRDMLAANP--DIHHIYGLdRRWKKQGKRYQLKMQWQLIQTLRQQRYDMVlnLADQWPSAVISKLTGAAtrigfd 126
                     56778888888888888877777777777..555555550567777778889******************9878888888766555555677999 PP

  Glyco_transf_4  94 ..rlgiplVltvHglye....k 109
                       +++ p+  ++H+  +    +
      CTQ30556.1 127 fpKRRHPVWRYCHTALAstqqH 148
                     9999999999999998643331 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0037
  Glyco_transf_4  10 eLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkre.kpDvvHahspaalgaallal 91 
                      L++aL + G+ V+ +t+g+d ++ + v++++++    ++++   +++l+ l ++  +++ + ++D v  h++aalg  l+al
      CTQ30556.1 218 ALINALSAEGYAVV-LTSGPDAREKKMVDTIIAGCPQARLHSLAGQLTLRQLAAVIDHARLFiGVDSVPMHMAAALGTPLVAL 299
                     6999******9985.56666666666644555555555566666666777777777777777889988888877777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2765.79
//
Query:       CTQ30557.1  [L=375]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-25   87.5   0.0    1.3e-24   86.7   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
    1.9e-21   76.9   0.0    9.7e-21   74.6   0.0    1.9  2  Glyco_trans_1_4  Glycosyl transferases group 1
    2.1e-17   63.6   0.7    4.4e-17   62.6   0.7    1.6  1  Glyco_transf_4   Glycosyltransferase Family 4
    3.8e-06   27.4   1.1      1e-05   26.0   1.1    1.9  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
  ------ inclusion threshold ------
      0.012   16.0   0.0      0.025   14.9   0.0    1.5  1  Glyco_trans_1_2  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   3.5e-28   1.3e-24       6     153 ..     196     335 ..     192     339 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 3.5e-28
                      HHHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEE CS
  Glycos_transf_1   6 rkklgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaGngeeekelkklaeelelsdnviflgevsredleellknadifvlp 99 
                      r+k++++ +   +++vg   ++Kg++ +i+a+a        +  l+++G+ +++ ++++la++l+ +++v+f+g +s  +   ++++ad ++lp
       CTQ30557.1 196 RAKWQLPLQATCLIYVGSGFERKGLAAAIRAIA------PTDRYLLVVGKDKDQPRYQALAKSLNCEARVRFFGMQS--ETLPFYQMADGLLLP 281
                      778888889999*********************......5688999*******************************..9999*********** PP

                      ESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHH CS
  Glycos_transf_1 100 sisEgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeair 153
                        +++f+ v+lEAma+glpvi++  +g ae ++dg++G+++++ ++ al +a+ 
       CTQ30557.1 282 TLYDPFPNVILEAMACGLPVITTTGCGGAEFIVDGHNGYVCDALDIPALQQAVM 335
                      ******************************************999998888775 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.38   1.4e+03      15      51 ..      75     115 ..      63     163 .. 0.70
   2 !   74.6   0.0   2.7e-24   9.7e-21       4     131 ..     208     337 ..     205     339 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.38
                      GTHHHHHHHHHHHH.HH....EEEEEES---...HHHHHHHT CS
  Glyco_trans_1_4  15 kgvdllleavpllrkkd....vrlvivGdgp.rpeeleelaa 51 
                       ++ +  e + l+++++    + l+ +Gdg  r + l+++ +
       CTQ30557.1  75 ARALWQHESFDLVQSHEripgCDLYRAGDGVhR-RWLQQRSR 115
                      556677777788885523557999999999855.48887665 PP

  == domain 2  score: 74.6 bits;  conditional E-value: 2.7e-24
                      EEEES---GG.GTHHHHHHHH.HHHH.HHEEEEEES---...HHHHHHHT..T-T.TEEEE---THHHHHHHH-SEEEE--..---SHHHHHHH CS
  Glyco_trans_1_4   4 ilfvGrleenvkgvdllleav.pllrkkdvrlvivGdgp.rpeeleelaa..gleerveftGfvedlaellaaadvfvaPs..egfglkllEam 91 
                      +++vG+   ++kg+   ++a+ p  r     l++vG+++ + +++++la+  + e+rv+f G  ++  ++++ ad +++P+    f++++lEam
       CTQ30557.1 208 LIYVGSG-FERKGLAAAIRAIaPTDR----YLLVVGKDKdQ-PRYQALAKslNCEARVRFFGMQSETLPFYQMADGLLLPTlyDPFPNVILEAM 295
                      7899988.4569**999999955444....7*****87755.488877766788899*******9****************999********** PP

                      HTT-EEEE-T.GGGTTT--..TTSSEE--TT-HHHHHHHHHHH CS
  Glyco_trans_1_4  92 aaglpvVatd.vggiaevv..gengllvppgdpealaeailrL 131
                      a+glpv++t+ +gg ae++  g ng+++++ d  al +a+ +L
       CTQ30557.1 296 ACGLPVITTTgCGG-AEFIvdGHNGYVCDALDIPALQQAVMAL 337
                      *********82556.88777*********99*99999999876 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.7   1.2e-20   4.4e-17       2     170 .]      17     183 ..      16     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 1.2e-20
  Glyco_transf_4   2 GGverhvleLaraLarrGheVtvvtpgddgpleeevelvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrlg 96 
                     GG+er+v +  +aL     +  v+t++++gp         +++  ++++ +r  r   f+ ++r+l+++e +D+v +h  ++++  ++a      
      CTQ30557.1  17 GGAERFVSRALEALDSSHLQLNVITREWQGPVKPD----WQIHICNPRKWGRISRERGFANAARALWQHESFDLVQSHERIPGCDLYRA-G---- 102
                     9**********************************....5677777788889999************************9998444433.3.... PP

  Glyco_transf_4  97 iplVltvHglye.........krllkarlkplsrllralerrl..lrradrviavSeatadelrerygvppekitVipnGvDler 170
                           vH  +          ++    +  +++r++   er +   ++ + vi++ e +++e++e +g+p+eki+Vi+n++D +r
      CTQ30557.1 103 ----DGVHRRWLqqrsrilpaWKSRLLFADRYHRYVMQAEREMyeDSHLRGVICNAEMIKREIIEDFGLPAEKIHVIYNAIDNQR 183
                     ....47999999999999888777777888999999999999955557779*******************************876 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   1.1   2.9e-09     1e-05       1     159 [.      17     177 ..      17     178 .. 0.71

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.9e-09
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrpspl.adlaalralrrllrqrrerpdvvhahs.ptaglaarlar 92 
                      gG++r v + ++aL     ++ v+t++++++  +    ++++ +   pr+ ++  +   ++ a+r+l+  ++e +d+v++h+ +++  + r+  
       CTQ30557.1  17 GGAERFVSRALEALDSSHLQLNVITREWQGPVKP--DWQIHICN---PRKWGRIsRERGFANAARALW--QHESFDLVQSHErIPGCDLYRAGD 103
                      8****************99*******98888772..33455533...333322303455777777777..************766666666666 PP

  Glyco_trans_4_4  93 rrrgiplvvtlhglllrrg.....sgavrrlyralerrllrr..adavlvvseaeaeelra.lgvpadrvvvvpn 159
                       + + ++++     l+++      + + +r++  +er ++     ++v+++ e + +e+++ +g+pa++++v+ n
       CTQ30557.1 104 -GVHRRWLQQRSRILPAWKsrllfADRYHRYVMQAEREMYEDshLRGVICNAEMIKREIIEdFGLPAEKIHVIYN 177
                      .6666666666643333222223444556666778999997744778**************************98 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0     7e-06     0.025       3      58 ..     279     336 ..     277     367 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7e-06
  Glyco_trans_1_2   3 LnpsrsespnlrlfEaaacGafaltddaegleelftpgkevilfe..dleelaekiry 58 
                      L p+ ++ +  +++Ea+acG +++t+   g +e++ +g+ + + +  d   l++++ +
       CTQ30557.1 279 LLPTLYDPFPNVILEAMACGLPVITTTGCGGAEFIVDGHNGYVCDalDIPALQQAVMA 336
                      556777888899**************65888999999988877765555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2937.09
//
Query:       CTQ30558.1  [L=364]
Description: putative glycosyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-20   72.2   0.0    6.2e-20   71.4   0.0    1.4  1  Glycos_transf_1  Glycosyl transferases group 1
    1.4e-16   61.1   0.0    2.5e-16   60.3   0.0    1.4  1  Glyco_trans_1_4  Glycosyl transferases group 1
    6.1e-15   55.6   0.2    3.2e-14   53.3   0.1    2.0  2  Glyco_transf_4   Glycosyltransferase Family 4
    1.9e-06   28.4   3.6    1.6e-05   25.4   1.9    2.3  2  Glyco_trans_4_4  Glycosyl transferase 4-like domain
  ------ inclusion threshold ------
       0.04   13.9   0.0       0.43   10.5   0.0    2.2  2  Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0   1.7e-23   6.2e-20      13     159 ..     196     338 ..     186     348 .. 0.87

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 1.7e-23
                      TT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES...STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHHHHCESEEEEEESSBS CS
  Glycos_transf_1  13 ekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG..ngeeekelkklaeelelsdnviflgevsredleellknadifvlpsisEg 104
                       +  +++ vgr+ + K++d+l++a+a++      ++ lv+ G  + e+e++l++la+ l++ d+v f g+++  +   ++k a ++vl+s sEg
       CTQ30558.1 196 PDGDYLIHVGRFHPGKRHDRLLEAYAQS----GIDAPLVLLGqgKPEQEQRLRQLAKTLHIDDRVWFKGFQK--NPLPWIKGARMLVLSSDSEG 283
                      5667899*******************76....999999999988999*************************..99****************** PP

                      S-HHHHHHHHTT--EEEET.TTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSH CS
  Glycos_transf_1 105 fGivllEAmaaglpviasn.aggpaevvkdgetGllvkpnnaealaeairkllede 159
                      fG v++EA+ + +pv ++   gg+ e+++ +    l + +   ala+ ++++ +++
       CTQ30558.1 284 FGNVVVEALLLHTPVASTRcPGGVTEILTGELARGLADLT-SPALAQTMQSIYHNP 338
                      *******************99****999877655555555.456666666666665 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0     7e-20   2.5e-16       3     133 ..     200     336 ..     198     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 7e-20
                      EEEEES---GG.GTHHHHHHHHHHHH.HHEEEEEES---....HHHHHHHT..T-T.TEEEE---THHHHHHHH-SEEEE--..---SHHHHHH CS
  Glyco_trans_1_4   3 vilfvGrleenvkgvdllleavpllrkkdvrlvivGdgp..rpeeleelaa..gleerveftGfvedlaellaaadvfvaPs..egfglkllEa 90 
                       +++vGr+++  k++d llea ++    d+ lv+ G+g+  ++++l++la+  ++++rv f Gf ++  ++++ a+++v+ s  egfg++++Ea
       CTQ30558.1 200 YLIHVGRFHPG-KRHDRLLEAYAQSG-IDAPLVLLGQGKpeQEQRLRQLAKtlHIDDRVWFKGFQKNPLPWIKGARMLVLSSdsEGFGNVVVEA 291
                      6899****655.**********5555.3589*****99765449999888778999*********99****************99********* PP

                      HHTT-EEEE-TGG.GTTT--.TTSSEE--TT-HHHHHHHHHHHHH CS
  Glyco_trans_1_4  91 maaglpvVatdvg.giaevv.gengllvppgdpealaeailrLle 133
                      + + +pv +t+++ g+ e++ ge +  +++  + ala+ ++ +++
       CTQ30558.1 292 LLLHTPVASTRCPgGVTEILtGELARGLADLTSPALAQTMQSIYH 336
                      ************7589**999876654554568889988888776 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.1     9e-18   3.2e-14       2     168 ..      13     182 ..      12     184 .. 0.76
   2 ?   -0.5   0.0      0.29     1e+03      10      60 ..     215     267 ..     214     278 .. 0.67

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 9e-18
  Glyco_transf_4   2 GGverhvleLaraLarrGheVtvvtpgddgpleeev....elvvrvprvplpllkrllrsl.aflrrlrrllkrekpDvvHahspaalgaallal 91 
                     GG+e +vl+La ++ r+G +V++++ +d  + +  +     +v +  r+p+++l  l r+  +   ++ r+ +++++D+v ++ + +   +++  
      CTQ30558.1  13 GGAEKVVLTLAAQFLRDGDRVSLISLRDVCEYPLPEgldyQVVADRCRKPWRKLTELSRRArQLDAAVVRAEQQGQFDLVLSNLHKTDRIVARSR 107
                     9***********************777766555555555433333333333344444444304444455555555*****999999997666555 PP

  Glyco_transf_4  92 rrrlgiplVltvHglyekrllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVipnGvDl 168
                     ++ +   + + +Hg + +  + +++  ++r+ +    + + + + v++vS+a+ ++l+e + ++p+++ +i+n+ D+
      CTQ30558.1 108 AL-RERNVWFCLHGVF-SASYLGHRTGFDRWMKQQKIKRIYQGRNVVTVSDAVGRDLVEEFALRPAQLKTIYNPFDI 182
                     54.888999999****.788888889999998888877899*********************************997 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.29
  Glyco_transf_4  10 eLaraLarrGheVtvvtpgddgpleeev..elvvrvprvplpllkrllrslaf 60 
                     +L +a a+ G++  +v  g+++p++e++   l + ++   ++++k++++++ +
      CTQ30558.1 215 RLLEAYAQSGIDAPLVLLGQGKPEQEQRlrQLAKTLHIDDRVWFKGFQKNPLP 267
                     58899999999999999999999888888844455555555555555554444 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   1.9   4.4e-09   1.6e-05       1     159 [.      13     178 ..      13     179 .. 0.73
   2 ?    2.2   0.0      0.06   2.1e+02       7      52 ..     213     263 ..     209     307 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 4.4e-09
  Glyco_trans_4_4   1 gGigryvaelaraLaarGheVtvltpap..apgapeleedgvrvhrlpvprrpspladlaalralrrll..rqrrerpdvvhahsptaglaarl 90 
                      gG++++v  la+++ ++G +V ++  ++   ++ pe    +v   r++ p+r  ++   +++r+l +++  + ++ ++d+v ++  ++  ++++
       CTQ30558.1  13 GGAEKVVLTLAAQFLRDGDRVSLISLRDvcEYPLPEGLDYQVVADRCRKPWRK-LTELSRRARQLDAAVvrAEQQGQFDLVLSNLHKTDRIVAR 105
                      8************************5442222222222334555566667774.34445678999999897779***********999999999 PP

  Glyco_trans_4_4  91 arrrrgiplvvtlhglllrrgsgavrrlyraler....rllrradavlvvseaeaeelra.lgvpadrvvvvpn 159
                       r+ r   +++ lhg   +++ g +  + r++ +    r++++ + v++vs+a+ ++l++ + ++++++ ++ n
       CTQ30558.1 106 SRALRERNVWFCLHGVFSASYLGHRTGFDRWMKQqkikRIYQG-RNVVTVSDAVGRDLVEeFALRPAQLKTIYN 178
                      99899*********98777777777777777744122255544.44777777777666666*******999988 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.06
  Glyco_trans_4_4   7 vaelaraLaarGheVtvlt..papapgapeleedgvrvh...rlpvprrps 52 
                        +l++a+a+ G +  ++   +++++++++l++   ++h   r+++   ++
       CTQ30558.1 213 HDRLLEAYAQSGIDAPLVLlgQGKPEQEQRLRQLAKTLHiddRVWFKGFQK 263
                      56899*******998766644666666666777777777778888777765 PP

>> Glyco_tran_WecB  Glycosyl transferase WecB/TagA/CpsF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.11   3.9e+02      96     150 ..      88     141 ..      53     147 .. 0.71
   2 ?   10.5   0.0   0.00012      0.43      72     120 ..     202     250 ..     171     260 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.11
  Glyco_tran_WecB  96 kpdlllvglGapkqEkwiarlkeelkakviigvGaaf.dflagkvkraPkwmqklg 150
                      + dl+l  l   k ++++ar ++  +++v++++ ++f   + g+     +wm++ +
       CTQ30558.1  88 QFDLVLSNL--HKTDRIVARSRALRERNVWFCLHGVFsASYLGHRTGFDRWMKQQK 141
                      555555444..678888999999545569999999995678888888888888765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00012
  Glyco_tran_WecB  72 riagthdgykeeeeeaiieainas..kpdlllvglGapkqEkwiarlkeel 120
                        +g+ ++   +  ++++ea ++s  ++ l+l+g G p+qE+ +++l++ l
       CTQ30558.1 202 IHVGRFHPG--KRHDRLLEAYAQSgiDAPLVLLGQGKPEQEQRLRQLAKTL 250
                      456666664..78999*******9445669**************9999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2949.91
//
Query:       CTQ30559.1  [L=329]
Description: putative glycosyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-24   85.0   0.0      8e-24   84.3   0.0    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
    3.3e-07   30.1   0.0    4.9e-07   29.5   0.0    1.2  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
    8.1e-07   29.2   0.0    3.6e-06   27.0   0.0    1.8  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
    4.5e-06   27.1   0.3      4e-05   24.0   0.0    2.3  2  Glyco_tranf_2_4  Glycosyl transferase family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   1.8e-27     8e-24       1     125 [.       8     130 ..       8     181 .. 0.92

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 1.8e-27
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      s+v  +yN ek l++++e + +q   + +e+i+v+DgStD++ +++ e++++ ++v v+ +e n+G + a+n+gl+aa+g+y++f D Dd   p
       CTQ30559.1   8 SIVAAVYNGEKFLAQFFECIEQQ-QLDSYELILVNDGSTDNSLAVIAEWQERLQNVQVLEQE-NQGVSVARNTGLAAASGKYLAFPDIDDKLYP 99 
                      89999*************66666.**************************************.99***************************** PP

                      THHHHHHHHHHH.TTCEEEEEEEEEECCCCC CS
  Glycos_transf_2  95 dwleklvealekdgadvvlgqrprifgetde 125
                      +  + l+e +ek+  d++ ++  +   +++e
       CTQ30559.1 100 GMYRTLLEMAEKEHLDIATCNGTYVYEKRRE 130
                      ***************9999987777666655 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.1e-10   4.9e-07       2     111 ..       9     114 ..       8     126 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 1.1e-10
  Glyco_tranf_2_2   2 vviplraseerhyieervlqkakyydeeielivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfis 95 
                      +v +++++e+   + +    + ++  +  eli+v+dgS+++ l ++    +  ++v +   +++  + + arN G   a + ++ F D D+   
       CTQ30559.1   9 IVAAVYNGEKF--LAQFFECIEQQQLDSYELILVNDGSTDNSLAVIAEWQERLQNVQV--LEQENQGVSVARNTGLAAASGKYLAFPDIDDKLY 98 
                      56666666664..4444444444444689*****************999877666643..33456688999*********************** PP

  Glyco_tranf_2_2  96 sDkfekilklitikkl 111
                      + ++  +l++++  +l
       CTQ30559.1  99 PGMYRTLLEMAEKEHL 114
                      ***9999998876655 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   8.1e-10   3.6e-06       5     133 ..       8     150 ..       5     195 .. 0.72
   2 ?   -0.5   0.0      0.21   9.4e+02      46      68 ..     242     262 ..     226     290 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 8.1e-10
  Glyco_tranf_2_3   5 avlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDdDt 98 
                      +++ +++n e+ l    e +  q+ +++e+++v d+s++  l+v+ e +++l++v  +v+ +++  g+   s a n +l a++++++++ D D+
       CTQ30559.1   8 SIVAAVYNGEKFLAQFFECIEQQQLDSYELILVNDGSTDNSLAVIAEWQERLQNV--QVLEQEN-QGV---SVARNTGLAAASGKYLAFPDIDD 95 
                      55556666666666666666666789**************************996..8886655.554...55568****************** PP

  Glyco_tranf_2_3  99 vvePdtlkrllqffltpkvgavgtpv.fll..nrstl.................v 133
                       + P+  + ll  ++ +  ++++++  +++  +r+++                 v
       CTQ30559.1  96 KLYPGMYRTLLEMAEKEHLDIATCNGtYVYekRRESHpifpldrlpstdvlpghV 150
                      **************88889999876535542134444455555555555555550 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.21
  Glyco_tranf_2_3  46 levaeelaaalpdvrvrvvvnar 68 
                      le++e++ +++pd +vr +  a+
       CTQ30559.1 242 LEMLEAINQRYPD-KVRHI-AAC 262
                      6889999999999.89976.444 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0     9e-09     4e-05       2      84 ..      15      97 ..      14     108 .. 0.79
   2 ?    0.6   0.1      0.18   8.1e+02       4      67 ..     228     295 ..     194     305 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 9e-09
  Glyco_tranf_2_4  2 neadiLpeflahhlalgfd..rilvydndstDgtrailkelpe.vkllhvdksyederrqvellkallaryaeadwvlvvDaDEfl 84
                     n +++L +f +++++   d  ++++++++stD++ a+++e++e ++ ++v    e+e+++v++ +++   +a ++++++ D+D  l
       CTQ30559.1 15 NGEKFLAQFFECIEQQQLDsyELILVNDGSTDNSLAVIAEWQErLQNVQV---LEQENQGVSVARNTGLAAASGKYLAFPDIDDKL 97
                     7899********9887776336******************9553655544...446678888666666667899********9755 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.18
  Glyco_tranf_2_4   4 adiLpeflahhlalgfdrilvydndstDgtrail.kelpevk....llhvdksyederrqvellkalla 67 
                      +d+L +  +h+ ++  + +  +++   D++r+i   +++ +k    ++h+ +s++de  ++ +++++++
       CTQ30559.1 228 DDTLMRSARHYMKI-LEMLEAINQRYPDKVRHIAaCRWQIAKeglgIIHTFDSMKDESKKHVIINEFFD 295
                      45666667777777.666777777777777777644443333333377777777777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2438.84
//
Query:       CTQ30560.1  [L=424]
Description: 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-68  230.1   0.0    6.7e-68  227.8   0.0    1.9  2  Glycos_transf_N  3-Deoxy-D-manno-octulosonic-acid transferase
    0.00012   21.6   0.0    0.00033   20.2   0.0    1.7  1  Glycos_transf_1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glycos_transf_N  3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.8   0.0   7.5e-72   6.7e-68       1     178 []      32     210 ..      32     210 .. 0.98
   2 ?   -0.4   0.0     0.084   7.5e+02      40      60 ..     226     246 ..     215     262 .. 0.73

  Alignments for each domain:
  == domain 1  score: 227.8 bits;  conditional E-value: 7.5e-72
  Glycos_transf_N   1 krlkerlglak.kekekliwiHaaSvGEveaalpLiealrerkpelkillTttTptGaevakkllaervdhvylPlDlpaavrrfldavkPdll 93 
                      kr++er+g+++ k ++  i++H++SvGE++aa pL++alr+r+p l+i++Tt+TptG+e+a ++++++v+hvylP+Dlp+a++rfl++v+P+l+
       CTQ30560.1  32 KRWAERYGFCQnKVEPDGILLHSVSVGETLAAIPLVRALRHRYPSLPITVTTMTPTGSERAMSAFGKDVHHVYLPYDLPGAMNRFLNTVQPKLV 125
                      69********97666688**************************************************************************** PP

  Glycos_transf_N  94 ilvetElWpnllaaakkrgipvilvnArlserslrryrrfkallrsllskfdlilaqseedaerlralgapeervevtgnlKfda 178
                      i++etElWpn++aa++kr+ip++++nArlsers+++y++++ ++r+lls+++li+aq+eed +r+ +lg++++++ vtg+lKfd+
       CTQ30560.1 126 IVMETELWPNMVAALHKRKIPLVIANARLSERSAKGYAKLGGFMRRLLSRITLIAAQNEEDGNRFLSLGLKRNQLAVTGSLKFDI 210
                      ***********************************************************************************95 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.084
  Glycos_transf_N  40 erkpelkillTttTptGaeva 60 
                      +  p+ k+++ t T+ G+e++
       CTQ30560.1 226 QWAPHRKVWIATSTHDGEEQI 246
                      334889999999999999865 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   3.7e-08   0.00033      75     162 ..     301     390 ..     243     399 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.7e-08
                      GGEEECCHSSSHHHHHHCESEEEEEESS.BSS-HHHHHHHHTT--EEEET.TTTHCHHCHTTT..SEEEE-TT-HHHHHHHHHHHHHSHHHH CS
  Glycos_transf_1  75 viflgevsredleellknadifvlpsis.EgfGivllEAmaaglpviasn.aggpaevvkdge..tGllvkpnnaealaeairklledeelr 162
                      + ++g  +  +l+ l+ +ad++++     E  G+++lE  a  +pv+    +  ++++ ++ +  +Gl+   ++a++l++++  ll+de+ r
       CTQ30560.1 301 QVVIGDTM-GELMLLYGIADLAFVGGSLvERGGHNPLEPAAHAIPVLMGPhTFNFKDICAKLQqdDGLIT-VTDADSLVREVSTLLTDEDYR 390
                      44455554.7899999**99988765555*********************9999****999999666555.556**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3033.45
//
Query:       CTQ30561.1  [L=258]
Description: Lipopolysaccharide core biosynthesis glycosyltransferase WaaE [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-20   73.7   0.1    2.1e-20   73.2   0.1    1.2  1  Glycos_transf_2  Glycosyl transferase family 2
    1.3e-09   38.4   0.1    3.3e-09   37.1   0.1    1.7  1  Glyco_tranf_2_4  Glycosyl transferase family 2
    0.00033   20.6   0.0    0.00042   20.3   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
    0.00054   19.5   0.0    0.00083   18.9   0.0    1.2  1  Glyco_tranf_2_2  Glycosyltransferase like family 2
     0.0032   17.6   0.0       0.11   12.7   0.0    2.2  2  HdeA             HdeA/HdeB family


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.1   5.9e-24   2.1e-20       1     142 [.       6     138 ..       6     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 5.9e-24
                      EEEEEESS-TTTHHHHHHHHHHHGGCCEEEEEEEEES-SSCHHHHHGGGCHC-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEEESSEEE-T CS
  Glycos_transf_2   1 svviptyNeektlletlesllaqdpypdfeiivvDDgStDetveileelakedprvrvirreenvGkagalnaglraatgdyilflDaDdepdp 94 
                      svv+++ N +++l+ +l s+        +eiiv+D gStD+tve++++l     +  v++++  +G++  + ++ ++atgd++l +D D  ++p
       CTQ30561.1   6 SVVMIAKNAADLLPDCLGSVSWA-----DEIIVLDSGSTDNTVELARRL-----GAQVYTHTDWRGYGIQRQRAQDYATGDWVLMIDTDERVTP 89 
                      8********************99.....*********************.....99***999888***************************** PP

                      THHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS..EEEECCHCCC CS
  Glycos_transf_2  95 dwleklvealekdgadvvlgqrprifgetdeiernkrv..generlyfke 142
                      +  + +++ l++ +  ++++++ r+++  +++ r++++   +  rly++ 
       CTQ30561.1  90 ELRQAILKVLDA-PQRGAIYSIARRNYFLGRFMRHSGWypDRVLRLYERA 138
                      ************.888*******************998653333333333 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.1   9.3e-13   3.3e-09       1      86 [.      12      89 ..      12      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 9.3e-13
  Glyco_tranf_2_4  1 rneadiLpeflahhlalgfdrilvydndstDgtrailkelpevkllhvdksyederrqvellkallaryaeadwvlvvDaDEflvv 86
                     +n+ad+Lp +l+   ++ +d+i+v+d +stD+t ++ ++l  ++++++++ +++      + ++ +++ya +dwvl++D+DE ++ 
       CTQ30561.1 12 KNAADLLPDCLGSV-SW-ADEIIVLDSGSTDNTVELARRL-GAQVYTHTD-WRG----YGIQRQRAQDYATGDWVLMIDTDERVTP 89
                     79**********99.67.7********************8.556665555.874....555566678999************8765 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.2e-07   0.00042       4     131 ..       5     119 ..       2     178 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.2e-07
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesllaqeyprvevvvvvdesdaetlevaeelaaalpdvrvrvvvnarnlgstgksralnealravksdlvllvDdD 97 
                      l+v+  + n++d l ++l s++     ++e++v + +s++ t+e a+    +l++   +v++ ++    +g+    ++a + +++d+vl++D D
       CTQ30561.1   5 LSVVMIAKNAADLLPDCLGSVSW----ADEIIVLDSGSTDNTVELAR----RLGA---QVYTHTDW---RGYGIQRQRAQDYATGDWVLMIDTD 84 
                      66666677888888899999984....48************999665....6766...45555553...34444456888899*********** PP

  Glyco_tranf_2_3  98 tvvePdtlkrllqffltpkvgavg.tpvfllnrst 131
                       +v P++ +++l ++ +p+ ga++   ++++   +
       CTQ30561.1  85 ERVTPELRQAILKVLDAPQRGAIYsIARRNYFLGR 119
                      ***************99999988844445554444 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.3e-07   0.00083      31     106 ..      30      99 ..      25     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.3e-07
  Glyco_tranf_2_2  31 elivvddgSsekfleevssiidlnllvylkdeddkayslaaarNrGaskaesdlvlFlDaDcfissDkfekilkli 106
                      e+iv+d gS+++++e       l  +vy  ++d + y+    r r  ++a +d vl +D+D  ++++  ++ilk++
       CTQ30561.1  30 EIIVLDSGSTDNTVELA---RRLGAQVY-THTDWRGYGI--QRQRAQDYATGDWVLMIDTDERVTPELRQAILKVL 99 
                      89**********66554...45667888.9998888876..567889********************999999976 PP

>> HdeA  HdeA/HdeB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.046   1.7e+02      57      80 ..      70      93 ..      66      94 .. 0.88
   2 !   12.7   0.0   3.1e-05      0.11      28      63 ..     164     199 ..     156     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.046
                SCCSGCCCCSHHHHHHHHHHHHHH CS
        HdeA 57 skgkkgdavvdeegiekvtpkvve 80
                +++ +gd v+ +++ e+vtp++ +
  CTQ30561.1 70 QDYATGDWVLMIDTDERVTPELRQ 93
                67899***************9976 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.1e-05
                 -GGG-BHHHHHTS-GGGHHHHHHHHHHTTSCCSGCC CS
        HdeA  28 dlskmtCedFldldeeskpkviywvegynskgkkgd 63 
                 dl  +tC+dF +  +++ ++++ w+    +kgkk  
  CTQ30561.1 164 DLLHLTCRDFAGFQQKQLAYAAAWALERHQKGKKTS 199
                 55689*************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1997.95
//
Query:       CTQ30562.1  [L=159]
Description: pantetheine-phosphate adenylyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-22   78.6   0.0    6.2e-22   78.3   0.0    1.1  1  CTP_transf_like  Cytidylyltransferase-like
    4.3e-06   26.5   0.1    8.7e-06   25.5   0.0    1.4  2  Citrate_ly_lig   Citrate lyase ligase C-terminal domain


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0   6.9e-26   6.2e-22       1     142 [.       6     134 ..       6     135 .. 0.95

  Alignments for each domain:
  == domain 1  score: 78.3 bits;  conditional E-value: 6.9e-26
                      EEEE--TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-SCSSTHHHHHHHHHHH.TTCTTEEEEEEESEHHHHHHHTTTTEEEEEEEHHH CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleedlivgvpsdeppkkkkkplasaeeRlemlela.kevdevisvdpweltrevlkklkpdklylvigadv 93 
                      +++GtFDpi++GH++++ +a++++++ ++ +++ ++++k    p++s++eR++  e+a ++  +v ++ + +l  ++ + ++++  +l++g ++
       CTQ30562.1   6 IYPGTFDPITNGHIDIVTRAASMFDK-VVLAIAASPSKK----PMFSLDERIALAEQAtAHLVNVEVIGFSDLMANFARAQQAN--ILIRGLRA 92 
                      699***********************.888777777766....9****************************************..******** PP

                      HHHHHCHHHHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHHHHH CS
  CTP_transf_like  94 ledfsewkeleeilgnvklvvvsrpekqanvllkaekrtngiSstkire 142
                      ++df  ++e++    n++l+   ++     v+l++ k++++iSs+ ++e
       CTQ30562.1  93 VADF--EYEMQLAHMNRHLMPTLES-----VFLMPCKEWSFISSSLVKE 134
                      ****..****************999.....****************987 PP

>> Citrate_ly_lig  Citrate lyase ligase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   9.7e-10   8.7e-06       9     107 ..      12     114 ..      10     118 .. 0.86
   2 ?   -2.7   0.0      0.45   4.1e+03     152     175 ..     126     147 ..     121     152 .. 0.65

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 9.7e-10
  Citrate_ly_lig   9 nPftlGhryLvekaakendvvhlfvvke..dkslfsyeerlklvkkGikdlknvtlhegsdYli..sratfPsYflkeqeevaesqaelDlklfk 99 
                     +P t+Gh  +v +aa+  d v l +      k +fs +er++l ++ +++l nv +   sd +   +ra   +  ++  ++va+++ e+ l+ ++
      CTQ30562.1  12 DPITNGHIDIVTRAASMFDKVVLAIAASpsKKPMFSLDERIALAEQATAHLVNVEVIGFSDLMAnfARAQQANILIRGLRAVADFEYEMQLAHMN 106
                     69*********************99876225668**************************99962256777888999999999999999998888 PP

  Citrate_ly_lig 100 eriakalg 107
                     +++ ++l+
      CTQ30562.1 107 RHLMPTLE 114
                     88888775 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.45
  Citrate_ly_lig 152 lisaskvrkllkeknleklaelvP 175
                     +is+s v+++ +++   ++++++P
      CTQ30562.1 126 FISSSLVKEVARHQ--GDVSHFLP 147
                     68888888776654..35566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1310.03
//
Query:       CTQ30563.1  [L=269]
Description: formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-33  112.7   0.0    8.6e-33  112.2   0.0    1.3  1  H2TH            Formamidopyrimidine-DNA glycosylase H2TH doma
    1.1e-30  106.6   0.0      2e-30  105.8   0.0    1.4  1  Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-termina
      5e-08   32.7   5.4    9.9e-08   31.7   5.4    1.5  1  zf-FPG_IleRS    Zinc finger found in FPG and IleRS
  ------ inclusion threshold ------
      0.033   14.4   1.9      0.064   13.4   1.9    1.5  1  Auto_anti-p27   Sjogren's syndrome/scleroderma autoantigen 1 
       0.05   12.4   0.0      0.064   12.0   0.0    1.1  1  FbpA            Fibronectin-binding protein A N-terminus (Fbp


Domain annotation for each model (and alignments):
>> H2TH  Formamidopyrimidine-DNA glycosylase H2TH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.0   2.4e-36   8.6e-33       1      91 [.     129     219 ..     129     221 .. 0.97

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 2.4e-36
                 ---BTTSTTS-HHHHHHHHHT--SBHHHHHHCTTTSCS--HHHHHHHHHHTT--TTSBGGGS-HHHHHHHHHHHHHHHHHHHHTTTTGCCS CS
        H2TH   1 LgpeplseaftvdalaerlkkkkrkiktlLLDqklvaGlGNiyadEvLfrakihPerlakslskeelellhqeikevlkeaielgksgist 91 
                 Lgpepls+af++d+l+++++kkk++ik++L+D+klv+G+GNiya+E+Lf a+ihP+rla+sls ee+e l++ ik vl ++ie g++++++
  CTQ30563.1 129 LGPEPLSDAFNADYLQQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFSAGIHPDRLASSLSREECEQLVKVIKLVLLRSIEQGGTTLKD 219
                 8**********************************************************************************99998875 PP

>> Fapy_DNA_glyco  Formamidopyrimidine-DNA glycosylase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0   5.6e-34     2e-30       1     116 []       1     114 [.       1     114 [. 0.91

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 5.6e-34
                     X--HHHHHHHHHHHHHHHTT-EEEEEEE-SSHHHTS.THHHHHTT-.SEEEEEEEEETTEEEEEE..EEEEEEE-TTTEEESS.........TTE CS
  Fapy_DNA_glyco   1 MPElpEVetvrrglrrhllgkkiakvevlkdktlrg.spaafakalkgrkiasvgrrGKyllleldggevlvvhlgmtGrllikeaeeepp.kht 93 
                     MPElpEVet rrg+++hl+g++i ++ v ++  lr+   +++  +l++  + sv+rr+Kylllel  +++++vhlgm+G+l+i  +ee p  kh+
      CTQ30563.1   1 MPELPEVETSRRGIEPHLVGATILHAVV-RNGRLRWpVSEEI-YRLSDVPVLSVRRRAKYLLLEL-PDGWIIVHLGMSGSLRI-LSEELPAeKHD 91 
                     **************************99.*******544554.46********************.78*************99.444444479** PP

                     EEEEEEGGGEEEEEEETT---EE CS
  Fapy_DNA_glyco  94 kvrlelddgtelaFvDpRrfGrv 116
                     +v+l +++g+ l+++DpRrfG +
      CTQ30563.1  92 HVDLVMSNGKVLRYTDPRRFGAW 114
                     *********************87 PP

>> zf-FPG_IleRS  Zinc finger found in FPG and IleRS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   5.4   2.8e-11   9.9e-08       1      29 [.     241     269 .]     241     269 .] 0.98

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 2.8e-11
                   TSB-TTT--BBEEEECTTEEEEE-TTTT. CS
  zf-FPG_IleRS   1 GepCpRCwryiervgqagrstyfCprCqk 29 
                   GepC+ C+++++ +++a+r t++C +Cqk
    CTQ30563.1 241 GEPCRICGTPVVGTKHAQRATFYCRQCQK 269
                   9***************************7 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.9   1.8e-05     0.064      15      40 .]     241     268 ..     240     268 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.8e-05
  Auto_anti-p27  15 aetCpvCgvPLmrdr..kggkvyCvaCd 40 
                    +e C  Cg+P + ++  ++ + yC  C+
     CTQ30563.1 241 GEPCRICGTPVVGTKhaQRATFYCRQCQ 268
                    689************9999********6 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.8e-05     0.064     176     256 ..     141     224 ..     127     242 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
                 HHHHHHHHHS.XXXHHHHHHH..BTTXXHHHHHHHHTTXSSSH...............HHHHHHH.HTXXX....XXEE..... CS
        FbpA 176 eefkellskkekdlvkaLvka..fqGlspllaeelleragldketsakelseedlerlyealqel.leeleeekfepqlvlkee 256
                 + +++   kk++ ++ +L+++  + G+++ +a e l +ag+ ++  a++ls e+ e+l + ++ + l+++e++  + + +l+++
  CTQ30563.1 141 DYLQQKCAKKKTAIKPWLMDNklVVGVGNIYASESLFSAGIHPDRLASSLSREECEQLVKVIKLVlLRSIEQGGTTLKDFLQSD 224
                 3455555567899999999654478************************************99751566666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1982.71
//
Query:       CTQ30564.1  [L=55]
Description: 50S ribosomal protein L33 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-18   67.2   1.5    1.4e-18   67.0   1.5    1.0  1  Ribosomal_L33  Ribosomal protein L33


Domain annotation for each model (and alignments):
>> Ribosomal_L33  Ribosomal protein L33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   1.5     8e-23   1.4e-18       1      47 []       7      53 ..       7      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 8e-23
                   .EEEEEET......EEEEETT..--S--EEEEEETTTTEEEEEEEE- CS
  Ribosomal_L33  1 ekvtLeCtecksrnYtttknkkntperLelkKYcprcrkhtlhkEtK 47
                   ek++L+++    + Ytttknk+++pe++elkKY+p++r+h+++kE+K
     CTQ30564.1  7 EKIKLVSSAGTGHFYTTTKNKRTKPEKMELKKYDPVVRQHVIYKEAK 53
                   69******766666*******************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 452.09
//
Query:       CTQ30565.1  [L=78]
Description: 50S ribosomal protein L28 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-25   88.9   1.7    2.1e-25   88.7   1.7    1.1  1  Ribosomal_L28  Ribosomal L28 family


Domain annotation for each model (and alignments):
>> Ribosomal_L28  Ribosomal L28 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   1.7   1.2e-29   2.1e-25       1      60 []       3      62 ..       3      62 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 1.2e-29
                   ---TTT------------S-..-SSS-BTTEEEEEEEE.TTTEEEEEEEEHHHHHH--.. CS
  Ribosomal_L28  1 rvCeltGkkpqfGnnvshsknkTkRtwkPNlqkvrlwseelgrkvrikvstkcLRtidkk 60
                   rvC++tGk+p++Gnn+sh+ n TkR+++PNl+++r+w+e+++r+v+++vs+k++R idkk
     CTQ30565.1  3 RVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVIDKK 62
                   8******************999************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 612.64
//
Query:       CTQ30566.1  [L=221]
Description: protein associated with replication fork, possible DNA repair protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-45  152.5   0.0    9.3e-45  151.5   0.0    1.5  2  RadC      RadC-like JAB domain
    0.00074   19.6   0.1     0.0016   18.5   0.1    1.6  1  HHH_2     Helix-hairpin-helix motif
      0.001   18.8   0.0     0.0016   18.2   0.0    1.3  1  Prok-JAB  Prokaryotic homologs of the JAB domain


Domain annotation for each model (and alignments):
>> RadC  RadC-like JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.98   5.8e+03       5      36 ..      38      67 ..      35      71 .. 0.66
   2 !  151.5   0.0   1.6e-48   9.3e-45       3     121 ..     102     219 ..     100     220 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.98
                HHHHHHHTTTSS-TTS.-EEEEEEE-TTSBEEE CS
        RadC  5 edvaeylkeeladleq.EefvvllLdsknrlia 36
                +dv++y ++ l   ++   +++ll   k +lia
  CTQ30566.1 38 QDVLSYAQALL---QRfGSLYALLSADKAQLIA 67
                67777765555...3347788888777777776 PP

  == domain 2  score: 151.5 bits;  conditional E-value: 1.6e-48
                 SHHHHHHHHTTTSS-TTS-EEEEEEE-TTSBEEEEEEEEESTT-GGGCSHHHHHHHHHHTT-SEEEEEEE-TTS--S--HHHHHHHHHHHHHHHHHT-E CS
        RadC   3 spedvaeylkeeladleqEefvvllLdsknrliadeelseGtlnstlvdprevfkealklnAaavilaHnhPsgdlepSeeDieltkrlkealkllgie 101
                 +p+ + e+l+++l+++e+E f+v++Ld++nr++++ +l++Gtl++++v+pre+++ea+k nAaavilaHnhPsg++epS++D+ +t+r+ +++++++i+
  CTQ30566.1 102 TPSMTREFLQSQLTEEEREIFMVIFLDNQNRVLKHSRLFSGTLSHVEVHPREIVREAIKVNAAAVILAHNHPSGSPEPSQADRLITERVIKCCRFMEIR 200
                 6788999******9999********************************************************************************** PP

                 EEEEEEEESSE.EEETCCCT CS
        RadC 102 llDhiIigdeeeyySfaeeg 121
                 +lDh++ig++  y+Sfae+g
  CTQ30566.1 201 VLDHLVIGRGA-YVSFAERG 219
                 ********655.*****987 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   2.6e-07    0.0016      15      44 ..      43      72 ..      41      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.6e-07
       HHH_2 15 tAklLakrFksldaLkkasleeLlevddiG 44
                 A++L +rF+sl aL +a+  +L++vd+ G
  CTQ30566.1 43 YAQALLQRFGSLYALLSADKAQLIAVDGLG 72
                69**************************99 PP

>> Prok-JAB  Prokaryotic homologs of the JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.6e-07    0.0016       8      97 ..     109     192 ..      95     218 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.6e-07
    Prok-JAB   8 lvaharrahpeEtcGlllgkeseseevivvplvnewsn...rfeipdpedslarlkfearerglevvgiwHSHpggsarPSetDrrdaaalar 97 
                 ++++++ ++ +E   +++ +  ++++  + +l         ++e+  p+++ +    ea + +   v  +H Hp gs++PS++Dr   ++  +
  CTQ30566.1 109 FLQSQLTEEEREIFMVIFLDN-QNRVLKHSRLFS---GtlsHVEV-HPREIVR----EAIKVNAAAVILAHNHPSGSPEPSQADRLITERVIK 192
                 555555555555555555554.333333333332...12224444.3333333....66778888999*****************87776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1707.48
//
Query:       CTQ30567.1  [L=58]
Description: hypothetical protein CH1034_360080 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 473.02
//
Query:       CTQ30568.1  [L=405]
Description: fused 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-73  246.2   3.3    4.3e-73  245.1   0.2    2.1  2  DFP              DNA / pantothenate metabolism flavoprotein
    1.7e-42  144.8   0.1    2.8e-42  144.2   0.1    1.3  1  Flavoprotein     Flavoprotein
  ------ inclusion threshold ------
       0.45    9.9   4.7       0.23   10.9   1.2    2.2  2  PALP             Pyridoxal-phosphate dependent enzyme
          3    8.3   7.8        3.7    8.0   2.6    2.6  3  Glyco_trans_4_4  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.4     0.042   1.9e+02      35      96 ..      25      96 ..      14     134 .. 0.71
   2 !  245.1   0.2   9.5e-77   4.3e-73       2     185 ..     189     370 ..     188     371 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.042
                HHHHHHHTT-EEEEEE-S-..SS---TT-EEEE.--SHHHHHHHHHHHH.......TT-SEEEE---S--EE CS
         DFP 35 lAeaaaarGaeVtlvsgpv..sletpegvevvk.vesaeemleaveeal.......keadivimaAAvaDyr 96
                l +++++rGaeV++   +   +  tp +++ v+ +  ++++l+ + ea+       k ad+vi a A aD  
  CTQ30568.1 25 LVRRLRERGAEVRVAMTEAakAFITPLSLQAVSgYPVSDSLLDPAAEAAmghielgKWADLVILAPATADLI 96
                667889999999998877411333455554443243444444433333324445546669999999999965 PP

  == domain 2  score: 245.1 bits;  conditional E-value: 9.5e-77
                 TT-EEEEEES-EEEECCTTEEEEE----HHHHHHHHHHHHTT-EEEEEE-S-SS---TT-EEEE--SHHHHHHHHHHHHTT-SEEEE---S--EEES-- CS
         DFP   2 egkkvlvtaGpTrEaiDpVRfisNrSSGkmGyalAeaaaarGaeVtlvsgpvsletpegvevvkvesaeemleaveealkeadivimaAAvaDyrpkea 100
                 ++ ++++taGpTrE++DpVR+i+N+SSGkmG+a+A+aaa+rGa+Vtl+sgpvsl+tp+ v++++v++a em++av++ +++++i+i +AAvaDyr +  
  CTQ30568.1 189 QHLNLMITAGPTREPLDPVRYITNHSSGKMGFAIAAAAAQRGANVTLISGPVSLPTPPFVQRIDVTTALEMEAAVQAGAQQQHIFIGCAAVADYRAAVI 287
                 66789********************************************************************************************** PP

                 -----------..----EEE---HHHHHHHC-S.S-EEEEEEE-SS-HHHHHHHHHHHTT-SEEEEEEGGGTTGGG-SS-EEEEE CS
         DFP 101 aeeKikkeeeeeeltleleknpdilaelaekkkkkqllvGFaaeteellenareklerkgldlivaNdvskeeagfgsdenevtl 185
                 ae+Kikk  +++elt++++knpdi+a +a+ k++++++vGFaaet++++e+ar+k++rk+ldli+aNdvs++++gf+sd+n+++l
  CTQ30568.1 288 AEDKIKK--QGDELTIKMVKNPDIVAGVAALKSHRPYVVGFAAETNNVEEYARQKRARKNLDLICANDVSQPNQGFNSDSNALHL 370
                 ******9..5678****************9999999*********************************************9987 PP

>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.1   6.1e-46   2.8e-42       1     157 [.       7     180 ..       7     181 .. 0.96

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 6.1e-46
                   EEEEEEE-SSCGGGCHHHHHHHHHHTTEEEEEEESCHHHHCCHHGGS..................TCSSHHHHHHCTTESEEEEEEEEHHHHHHHHT CS
  Flavoprotein   1 kkillgiTGsvaaikalellekLkkegievqvvltkaAkkfiskeklklaa..............redpilhielrrwadllviaPasantlakian 83 
                   kki+lg++G++aa+k++el+++L+++g+ev+v +t+aAk fi+  +l+l+a               e  + hiel +wadl++ aPa+a+ +a++a+
    CTQ30568.1   7 KKIVLGVSGGIAAYKTPELVRRLRERGAEVRVAMTEAAKAFIT--PLSLQAvsgypvsdslldpaAEAAMGHIELGKWADLVILAPATADLIARVAA 101
                   79*****************************************..77777788************99****************************** PP

                   T--SSHHHHHHHTHCCTTEEEEE.--HHCCTCSTCHHHHHHH.HT.....................GHHHHHHHHHHCHH CS
  Flavoprotein  84 GiadnlltlilratakkpiliaPamnpamyenpqtlknlekl.eegvtvikPse.....gdigkgkmaeieeivgkildk 157
                   G+a++l+++i +at+  p+ ++Pamn +my+ ++t++nl++l ++g  +++P++     gd+g+g+m ++ +iv+   ++
    CTQ30568.1 102 GMANDLVSTICLATP-SPVAVVPAMNQQMYRAQATQHNLQTLaTRGLLLWGPDSgsqacGDVGPGRMLDPLTIVDMAAQH 180
                   ***********9999.9*************************77*********889******************987765 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.19   8.6e+02      93     117 ..      25      46 ..      13     145 .. 0.51
   2 ?   10.9   1.2     5e-05      0.23      54     143 ..     206     313 ..     175     317 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.19
                 HHHHHHHTT-EEEEECCHHHHHHHH CS
        PALP  93 kvallrllGaevvevggdydeavaa 117
                  v++lr+ Gaev++     +ea++a
  CTQ30568.1  25 LVRRLRERGAEVRVA---MTEAAKA 46 
                 555555555555555...2222222 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5e-05
                 TTSEEEEEBSSHHHHHHHHHHHHHT-EEEEE...EETTS-H...........HHHHHHHHTT-..EEEEE......CCHHHHHHHHHHHHHHHSTTCEE CS
        PALP  54 gaktvveassGNhgralAaaaallGlkvtiv...vpadasp...........ekvallrllGa..evvev......ggdydeavaaaaelaaegegayl 130
                 + + ++  ssG +g a+Aaaaa  G  vt+    v+  ++p           e+ a+  + Ga  +   +        dy +av a  ++ ++ ++ + 
  CTQ30568.1 206 PVRYITNHSSGKMGFAIAAAAAQRGANVTLIsgpVSLPTPPfvqridvttalEMEAAV-QAGAqqQH--IfigcaaVADYRAAVIAEDKIKKQ-GDELT 300
                 55668899*********************99766333333344333333332222222.23332222..234665555677777777777777.88888 PP

                 --TTTSHHHHHHH CS
        PALP 131 vsqfdnptviegy 143
                 +   +np++++g 
  CTQ30568.1 301 IKMVKNPDIVAGV 313
                 8888888888885 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.6   0.00083       3.7       2      94 ..      16     102 ..      15     153 .. 0.66
   2 ?    1.3   1.6     0.093   4.2e+02      10      27 ..     222     239 ..      98     285 .. 0.67
   3 ?    2.4   0.1     0.043   1.9e+02      10      38 ..     222     250 ..     215     354 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00083
  Glyco_trans_4_4   2 Gigry.vaelaraLaarGheVtvltpapapgapeleedgvrvhrlpvprrpspladlaalralrrllrqrrerpdvvhahsptaglaarlarrr 94 
                      Gi+ y + el+r+L++rG+eV+v  +++ ++a+ ++   + +  +  ++ ++ l d+aa +a+  +        d+v++   ta l+ar+a+ +
       CTQ30568.1  16 GIAAYkTPELVRRLRERGAEVRVAMTEA-AKAF-ITP--LSLQAVSGYPVSDSLLDPAAEAAMGHIE--LGKWADLVILAPATADLIARVAA-G 102
                      555553579**************87644.4444.233..2222333444445567777777777765..67777888888888888888777.4 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.093
  Glyco_trans_4_4  10 laraLaarGheVtvltpa 27 
                      +a+a a+rG+ Vt++  +
       CTQ30568.1 222 IAAAAAQRGANVTLISGP 239
                      445555555555555533 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.043
  Glyco_trans_4_4  10 laraLaarGheVtvltpapapgapeleed 38 
                      +a+a a+rG+ Vt++  +   + p+ +++
       CTQ30568.1 222 IAAAAAQRGANVTLISGPVSLPTPPFVQR 250
                      78999999999999997766666665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3121.60
//
Query:       CTQ30569.1  [L=152]
Description: deoxyuridine 5'-triphosphate nucleotidohydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-43  147.5   0.0    1.8e-43  147.3   0.0    1.0  1  dUTPase   dUTPase


Domain annotation for each model (and alignments):
>> dUTPase  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.3   0.0     1e-47   1.8e-43       2     129 .]      17     150 ..      16     150 .. 0.97

  Alignments for each domain:
  == domain 1  score: 147.3 bits;  conditional E-value: 1e-47
                 TCTBEBESSTT-SSEEEE-SSSEEEET..TEEEEEEEEEEEE--T.TEEEEEEE-HHHHHHHEEEEE...EEEETTBTSEEEEEEEE-SSS-EEE-TT- CS
     dUTPase   2 eaeiptrkspesAgyDlsaakdltvkp..getvlvptdisiklpd.glaalilpRSglaakglivvp...gvidsdyrGevkvvlfnltkkdvkikkgd 94 
                 ++++pt+++++sAg+Dl+a+ d +v+   g t+l+pt+++i+++d +laa+ilpRSgl +k+++v++   g+idsdy+G+++v+++n++++++ i+ g+
  CTQ30569.1  17 QFPLPTYATSGSAGLDLRACLDDAVELapGATTLLPTGLAIHIADpSLAAVILPRSGLGHKHGVVLGnlvGLIDSDYQGQLMVSVWNRGQQSFIIEPGE 115
                 5789****************999998888********************************************************************** PP

                 EEEEEEEEEBECGEEEEESSTTTESSBTTXTTTTX CS
     dUTPase  95 RiAqLifariltaeleevetlkatergeggfgssg 129
                 RiAq++f+++++ae+++ve+++at+rgeggfg+sg
  CTQ30569.1 116 RIAQMVFVPVVQAEFNLVESFDATDRGEGGFGHSG 150
                 *********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1184.42
//
Query:       CTQ30570.1  [L=198]
Description: division inhibitor [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-09   36.4   0.0    5.5e-09   35.7   0.0    1.3  1  TetR_N     Bacterial regulatory proteins, tetR family
  ------ inclusion threshold ------
      0.047   13.9   0.5        1.3    9.3   0.0    2.8  4  TetR_C_16  Tetracyclin repressor-like, C-terminal domain
      0.074   11.3   0.2      0.071   11.4   0.2    1.0  1  DUF390     Protein of unknown function (DUF390)
      0.093   13.5   0.4        1.5    9.6   0.0    2.5  2  TetR_C_15  Tetracyclin repressor-like, C-terminal domain
       0.24   10.4   0.0       0.33   10.0   0.0    1.2  1  MtrH       Tetrahydromethanopterin S-methyltransferase MtrH s


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   1.5e-12   5.5e-09       5      46 ..      20      61 ..      17      62 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.5e-12
                HHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHHH CS
      TetR_N  5 ArelfaerGydattvreIAkrAGvskgalYryFpsKeeLlea 46
                A++l +  G ++ t++++A+++Gvs++alYr+FpsK  +++ 
  CTQ30570.1 20 ALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDS 61
                6677777899999************************99986 PP

>> TetR_C_16  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.099   3.5e+02      38      68 ..       5      35 ..       2      44 .. 0.76
   2 ?    9.3   0.0   0.00036       1.3      24      76 ..      46      99 ..      38     100 .. 0.91
   3 ?   -3.4   0.0       3.2   1.1e+04      37      42 ..     133     138 ..     121     146 .. 0.52
   4 ?   -2.2   0.0       1.4     5e+03      58      72 ..     183     197 ..     167     197 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.099
                HHHHHHHHHHHHHHCTTTS-STTHHHHHHHH CS
   TetR_C_16 38 ellrefleeqvlaplaarlggpdaelRaalv 68
                +++++  +e++l++la  l+ +d  +R++ +
  CTQ30570.1  5 QTAKRNRREEILQSLALMLESSDGSQRITTA 35
                6677778899999999999999999997654 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00036
                HHHHHH--------HHHHHHHHHHHHHHCTTTS-ST.THHHHHHHHHHHHHHHH CS
   TetR_C_16 24 lallrsalsseeaaellrefleeqvlaplaarlggp.daelRaalvasqllGla 76
                +al r   s+ +  + l ef+e+ +++++   l+++ d + R  l++ ++lG++
  CTQ30570.1 46 AALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEkDTTARLRLIVLLILGFG 99
                678888888889999999****************999***************85 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.2
                 -HHHHH CS
   TetR_C_16  37 aellre 42 
                 ++ lr+
  CTQ30570.1 133 EAQLRQ 138
                 222333 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.4
                 STTHHHHHHHHHHHH CS
   TetR_C_16  58 gpdaelRaalvasql 72 
                  +d + R  lva+ql
  CTQ30570.1 183 TDDFDARWPLVAAQL 197
                 567788888999886 PP

>> DUF390  Protein of unknown function (DUF390)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2     2e-05     0.071     514     597 ..       2      88 ..       1     148 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2e-05
      DUF390 514 aeakaasr.qreealearataleerarakeidladreaavairevtlaaheaaca.eeesalrlredalaerer.aleeaeaaaqrl 597
                 ae+++a r +ree l++ a+ le   +++ i  a   a+v + e++l  h  + +   +s + + ed+l  r    l++ + ++ rl
  CTQ30570.1   2 AEKQTAKRnRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTrMFDSLIEFIEDSLITRINlILKDEKDTTARL 88 
                 5677777725799************************************98765515688999999999888651455444455554 PP

>> TetR_C_15  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.11     4e+02      37      73 ..       5      41 ..       1      47 [. 0.84
   2 ?    9.6   0.0   0.00042       1.5       6      57 ..      88     138 ..      83     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.11
   TetR_C_15 37 lelvealeqriaealaalLarrrpelppedlelaafv 73
                +++ ++ +++i + la +L++     + ++++laa v
  CTQ30570.1  5 QTAKRNRREEILQSLALMLESSDGSQRITTAKLAASV 41
                567788899***********99999999999999877 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00042
   TetR_C_15   6 ldalvdallaahrenpalrrvlleeapslgelelvealeqriaealaalLar 57 
                 l+ +v   l + ++np+l r+l++ a + ++ +l  + +q + e+++a L++
  CTQ30570.1  88 LRLIVLLILGFGERNPGLTRILTGHALMFEQDRLQGRINQ-LFERIEAQLRQ 138
                 7889999999****************77777666555554.44455544444 PP

>> MtrH  Tetrahydromethanopterin S-methyltransferase MtrH subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   9.3e-05      0.33      93     161 ..      20      90 ..      13     109 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.3e-05
        MtrH  93 PllidstsaevklaaakyatevGladrviynsinas..iedaeiealkesdveaaivlafnpmdptvegkl 161
                  l+++s+ +  ++++ak a  vG+++ ++y     +  + d+ ie +++s +    ++  + +d+t+  +l
  CTQ30570.1  20 ALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKtrMFDSLIEFIEDSLITRINLILKDEKDTTARLRL 90 
                 5799**************************98755411457778888777665544444555666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 1553.49
//
Query:       CTQ30571.1  [L=213]
Description: orotate phosphoribosyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-12   45.7   0.0    6.8e-12   45.2   0.0    1.3  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
       0.06   12.8   0.0      0.093   12.2   0.0    1.2  1  PRTase_2      Phosphoribosyl transferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   7.6e-16   6.8e-12      13     129 ..      48     159 ..      38     191 .. 0.90

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 7.6e-16
                   EEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHS......TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHH CS
  Pribosyltran  13 davarlaaeileeyngkpdvvvgiargGvpfakiladeL......evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTl 103
                      +++a+ ++++ + + d+++g+a++G+p+a+ +a +L      ++p+++ rk+ + ++ +++ +          ++p   +V +VDD+++ G+++
    CTQ30571.1  48 LLGRFYAEALVDS-GIEFDLLFGPAYKGIPIATTTAVALaehhdrDLPYCFNRKEAKTHGEGGNLV----------GSPLQGRVMLVDDVITAGTAI 133
                   4566777788888.*********************************************9999996..........68999**************** PP

                   HHHHHHHHCC-BSEEEEEEEEE-HHH CS
  Pribosyltran 104 laalelLkekgpeevriavlvdkpat 129
                   ++ +e++ ++g++  ++  ++d+ ++
    CTQ30571.1 134 RESMEIIQAQGAQLAGVLISLDRQER 159
                   *************9999999988876 PP

>> PRTase_2  Phosphoribosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     1e-05     0.093     122     184 ..     118     181 ..     109     186 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1e-05
    PRTase_2 122 kelvLvDDEistGktalnliralqeklprkryvvvslv.dwrseedeaafaaleeelgirievv 184
                 ++++LvDD i++G+++ + ++ +q++  +   v++sl  + r + + +a++++e++ g+++  +
  CTQ30571.1 118 GRVMLVDDVITAGTAIRESMEIIQAQGAQLAGVLISLDrQERGRGEISAIQEVERDYGCQVISI 181
                 6799*************************99999998513455556788888888888886544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       280  (0.0156172); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1517.23
//
Query:       CTQ30572.1  [L=238]
Description: Ribonuclease PH [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-24   86.0   0.0    5.3e-24   85.2   0.0    1.3  1  RNase_PH        3' exoribonuclease family, domain 1
    5.3e-13   48.8   0.3    8.5e-13   48.1   0.3    1.3  1  RNase_PH_C      3' exoribonuclease family, domain 2
  ------ inclusion threshold ------
      0.089   13.3   0.1         23    5.6   0.0    2.4  2  BrnA_antitoxin  BrnA antitoxin of type II toxin-antitoxin sys


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   8.9e-28   5.3e-24       1     129 [.      10     140 ..      10     141 .. 0.93

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 8.9e-28
                 EEEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG--CCEEEECCCCECCCCEC-C.......S...HHHHHHHHHHHHHHCCTC-CCGC CS
    RNase_PH   1 elRslsietgvlsqanGSaylelGdtkvlasvtgpieerpseerddaegaldveveyapfasger....rregrpsdeeielsrlleralrpsillekk 95 
                 ++R++++  +  ++a+GS+++e+Gdtkvl++ + +  + p++ + + +g++++e+ + p ++++r      +g+++ +++e++rl+ ralr+ + l+  
  CTQ30572.1  10 QVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIDEGV-PRFLKGQGQGWITAEYGMLPRSTHTRnareAAKGKQGGRTMEIQRLIARALRAAVDLKAL 107
                 57**********************************99.666656667*****************997644589************************* PP

                 CTCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCT CS
    RNase_PH  96 pkstididitvlssdggslldalinaaslALada 129
                  + ti +d+ vl++dg ++  a+i++a++ALada
  CTQ30572.1 108 GEFTITLDCDVLQADG-GTRTASITGACVALADA 140
                 ****************.****************8 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.3   1.4e-16   8.5e-13       1      65 [.     157     222 ..     157     224 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 1.4e-16
                 S--EEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSC.EEHHHHHHHHHHHH CS
  RNase_PH_C   1 apviavtvgkvddqfvlDptkeEedlsegdltlavagtkevvtlmkeggsq.ldeetlleaielAk 65 
                 ++v+av+vg+v+++ ++D+ + E++ +e d++++++++++++ ++ + ++  ++ e+ll  + lA 
  CTQ30572.1 157 GMVAAVSVGIVNGEAICDLEYIEDSAAETDMNVVMTEDGRIIEVQGTAEGEpFTHEELLTLLALAR 222
                 58*********************************************99999**********9996 PP

>> BrnA_antitoxin  BrnA antitoxin of type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0044        26      34      60 ..      34      60 ..       6      61 .. 0.84
   2 ?    5.6   0.0    0.0038        23      24      50 ..      94     121 ..      68     121 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0044
  BrnA_antitoxin 34 stKkkvtlRLDadVleaFkatGkgwQt 60
                    +tK   t  +D+ V  ++k +G+gw t
      CTQ30572.1 34 DTKVLCTASIDEGVPRFLKGQGQGWIT 60
                    688899999****************65 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0038
  BrnA_antitoxin  24 argrpkrpl.estKkkvtlRLDadVlea 50 
                     + + +++++  ++    t+ LD+dVl+a
      CTQ30572.1  94 IARALRAAVdLKALGEFTITLDCDVLQA 121
                     45555666533333388********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1881.63
//
Query:       CTQ30573.1  [L=379]
Description: putative ABC-type multidrug transport system, permease component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-41  142.9  17.5    1.5e-41  142.7  17.5    1.0  1  ABC2_membrane_3  ABC-2 family transporter protein
    4.9e-29  101.3  21.2    3.4e-28   98.5  17.9    2.1  2  ABC2_membrane    ABC-2 type transporter
    9.7e-22   77.6   9.6    1.3e-21   77.2   9.6    1.1  1  ABC2_membrane_2  ABC-2 family transporter protein
    7.4e-09   35.8  10.9    1.6e-07   31.5   8.8    2.3  2  ABC2_membrane_4  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7  17.5   3.3e-45   1.5e-41       1     343 [.      28     370 ..      28     372 .. 0.87

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 3.3e-45
  ABC2_membrane_3   1 ksfliitlllPiilvlllglifsnsveddentpiavvdednsslsqqlvealeaspsvelvyevdseeeakkalkngdidgilvipkgfskdll 94 
                      k ++ ++ll P++ +++lg++++++   ++n+p+a++++d+  +sq +v++ +++++++  ++vdsee a+ka+  gd++ i++ip+gf+++ll
       CTQ30573.1  28 KVSISMVLLTPLFQLIILGYAINMD---PHNLPTALLNYDTERMSQIFVTEAQNTGYFS-MIPVDSEEAAQKAFVRGDVTFIVTIPEGFTRKLL 117
                      568889999********99998875...69*****************************.********************************** PP

  ABC2_membrane_3  95 kgesatvtvlinssnlnsskailnalns.llqqlnasalv.lqseatstsaninvestqleeelsnvasflvg.liliilifitasfiavsive 185
                       ge +++ +  ++ ++ ++ ++l+al +   +++  +  + +     + ++ +++ ++  ++++  ++   ++ ++  il++  ++++a si +
       CTQ30573.1 118 RGEKPQLLIQGDAIDPITTGNALSALVQvAKSMFQHDLPGdMRVV--QKEDDFELIIHRMFNPEGITQFNTIPgIMGSILSTTLILMTALSITR 209
                      999999888888888888888888877744555444333354433..445566666666688886665544444999***************** PP

  ABC2_membrane_3 186 Ekesrikelqlvsgvsplqywlskilgdflvyllqlllill...lafglgipfg.nlglllllfllfglayialgyllsslfknsetaqilifi 275
                      E+e++++e +lvs++s l+ +++ki+  ++++l+q+ lil+   l+f+  ip   +++ll++++l++ ++++++g  +s l +n+  a ++ ++
       CTQ30573.1 210 ERENGALENLLVSPLSGLEVIIGKITPFVIIGLFQATLILIaavLLFD--IPLHgSVFLLFFVLLIYVFLCLSIGIGISGLAQNQLQALQMSSF 301
                      ***********************************99888766569**..****4445566********************************* PP

  ABC2_membrane_3 276 villlsgffgglfpledlpsalkwifsiiPffapglgllrli.tgdplweillsliilalfavvyllla 343
                       +++ ++++g++ p+ ++p+++k i+s +P+++++ + + ++ +g++ + +l++l+ l+++av+++ ++
       CTQ30573.1 302 YFIPSLMLSGFVSPFISMPDWAKAIGSCLPLTYFIRLVKGIMlKGYSAMALLPDLLPLIGLAVIVIGVG 370
                      **977777777778999************************86888999**************998765 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.1    0.0061        27       6      41 ..      16      50 ..      11      85 .. 0.83
   2 !   98.5  17.9   7.6e-32   3.4e-28      46     209 ..     181     343 ..     167     344 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0061
  ABC2_membrane  6 llkreflqrwrdpslgllwrliqplllalvfgtvfg 41
                   ++ +e+    rd++++  + l++pl++++++g+++ 
     CTQ30573.1 16 VVIKEIHELRRDKVSI-SMVLLTPLFQLIILGYAIN 50
                   6678999999***888.99*************9875 PP

  == domain 2  score: 98.5 bits;  conditional E-value: 7.6e-32
  ABC2_membrane  46 sedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelpvsllqalifllivyflvgldls.rfflfllllllt 140
                     +++ ++pg+++ ++ ++  +++t++++++ere+g le +lvspl s  +++++k++ +++++l+qa+++l+ +++l++++l  ++fl++++ll++
     CTQ30573.1 181 ITQFNTIPGIMGSILSTTL-ILMTALSITRERENGALENLLVSPL-SGLEVIIGKITPFVIIGLFQATLILIAAVLLFDIPLHgSVFLLFFVLLIY 274
                    2333455999999999999.9999999******************.************************************9777********** PP

  ABC2_membrane 141 alaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkwlqwiaylnPltyavealrsnl 209
                    +++++s+g+ is la+++ +a q++s+ ++p l+lsGf+ p  smp w ++i  ++Plty+++++ +++
     CTQ30573.1 275 VFLCLSIGIGISGLAQNQLQALQMSSFYFIPSLMLSGFVSPFISMPDWAKAIGSCLPLTYFIRLVKGIM 343
                    ***************************************************************999887 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   9.6   2.9e-25   1.3e-21       3     285 ..      16     376 ..      14     377 .. 0.86

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 2.9e-25
  ABC2_membrane_2   3 iakkEfrdlvrsrrfllltvllpli..............dvalaylkdlgsslqseakaikeatlaleyveaasasdeaedtdqdlkv...... 76 
                      ++ kE+ +l+r+++ + +++l pl+               +  a l+ + +++++ ++ + ++t  +++   +s +++++++ +   v      
       CTQ30573.1  16 VVIKEIHELRRDKVSISMVLLTPLFqliilgyainmdphNLPTALLNYDTERMSQIFVTEAQNTGYFSMIPVDSEEAAQKAFVRGD-Vtfivti 108
                      688**********************9988888888888866666666666666666666666666666655555544444444433.1578899 PP

  ABC2_membrane_2  77 ..............................................................................vstimavlipviaalf 92 
                                                                                                    +++im  ++    +l+
       CTQ30573.1 109 pegftrkllrgekpqlliqgdaidpittgnalsalvqvaksmfqhdlpgdmrvvqkeddfeliihrmfnpegitqfntIPGIMGSILSTTLILM 202
                      9999999999************************************************************************************ PP

  ABC2_membrane_2  93 gadaiagEkergTlkllLskPvsRdeillgKfigglaigla.iavallatvllalaiilalgivlaledllllvvasvlllllvvflalglllS 185
                      +a +i++E+e+g l+ lL +P s  e+++gK+   ++igl+   ++l+a+vll       + i+l ++ +ll++v+ + ++l  + l++g+++S
       CTQ30573.1 203 TALSITRERENGALENLLVSPLSGLEVIIGKITPFVIIGLFqATLILIAAVLL-------FDIPLHGSVFLLFFVLLIYVFL--C-LSIGIGIS 286
                      *****************************************999999999777.......9*****9999999999998888..7.******** PP

  ABC2_membrane_2 186 svarssreaaalalglfvvlailvpivlygvaellagpavpqeindflsllsptsayntllneilagsdlnalgstatnllilllllavllvlg 279
                       +a+++ +a++ + +++++ +++ +++++++++++  +++       +    p  ++  l++ i   +   + ++    ll l++l+++++++g
       CTQ30573.1 287 GLAQNQLQALQ-MSSFYFIPSLMLSGFVSPFISMPDWAKA-------IGSCLPLTYFIRLVKGIMLKG--YSAMALLPDLLPLIGLAVIVIGVG 370
                      ****6666655.568899999************9997777.......888889999988888888888..456788888999999999999999 PP

  ABC2_membrane_2 280 yvlFkr 285
                      + ++++
       CTQ30573.1 371 LKSYRK 376
                      988776 PP

>> ABC2_membrane_4  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.01        47       5      47 ..      20      62 ..      17      87 .. 0.77
   2 !   31.5   8.8   3.6e-11   1.6e-07      38     178 ..     173     305 ..     167     306 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.01
  ABC2_membrane_4  5 EflKlkrskivwllvlaallvpllallyfnllgktgldpaefy 47
                     E+  l+r k+ + +vl++ l++l++l y   +++++l +a + 
       CTQ30573.1 20 EIHELRRDKVSISMVLLTPLFQLIILGYAINMDPHNLPTALLN 62
                     66669****9999999*******99999988888887765544 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 3.6e-11
  ABC2_membrane_4  38 ktgldpaefyslsvfgftlllllplilgiiasylifrEeqndtlknLltiPvsrtklllaKlivllllsvllmlvtflitvlfallsgfvgfsv 131
                      +++++p++ +++++++  +  +l + l+++++ +i+rE++n+ l nLl+ P s  +++++K++  +++     l+++++ +++a+l+  +++++
       CTQ30573.1 173 HRMFNPEGITQFNTIPGIMGSILSTTLILMTALSITRERENGALENLLVSPLSGLEVIIGKITPFVII----GLFQATLILIAAVLLFDIPLHG 262
                      6777888888888888777789999999*********************************9986554....4445555666667776666654 PP

  ABC2_membrane_4 132 klvlellkkclelgllvffavlpiialvllkksyvlpliltlvytia 178
                      +    ++  +++l ++vf++++  i ++ l ++++ +l ++ +y+i+
       CTQ30573.1 263 S----VFLLFFVLLIYVFLCLSIGIGISGLAQNQLQALQMSSFYFIP 305
                      3....3444556677777777777999*****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2797.89
//
Query:       CTQ30574.1  [L=305]
Description: ABC-type multidrug transport system, ATPase component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-33  114.9   0.0    7.8e-33  113.9   0.0    1.5  2  ABC_tran  ABC transporter
    2.8e-10   40.5   0.2    4.1e-07   30.1   0.0    2.2  2  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    4.9e-05   22.9   0.0    0.00039   19.9   0.0    2.0  1  SMC_N     RecF/RecN/SMC N terminal domain
    0.00068   20.2   0.0      0.001   19.6   0.0    1.4  1  AAA_23    AAA domain
     0.0026   17.6   0.0        0.9    9.2   0.0    2.2  2  AAA_15    AAA ATPase domain
  ------ inclusion threshold ------
      0.038   14.2   0.0       0.47   10.7   0.0    2.3  1  SbcCD_C   Putative exonuclease SbcCD, C subunit
      0.054   13.2   0.0       0.12   12.1   0.0    1.6  1  AAA_29    P-loop containing region of AAA domain
      0.058   13.8   0.0       0.35   11.3   0.0    2.2  1  AAA       ATPase family associated with various cellular acti
      0.074   13.4   0.0       0.14   12.5   0.0    1.5  1  AAA_16    AAA ATPase domain
       0.15   12.3   0.4        2.2    8.6   0.4    2.4  1  AAA_22    AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   0.0   4.4e-36   7.8e-33       2     137 .]      22     163 ..      21     163 .. 0.97
   2 ?   -2.9   0.0       5.1   9.1e+03      20      42 ..     232     253 ..     221     289 .. 0.59

  Alignments for each domain:
  == domain 1  score: 113.9 bits;  conditional E-value: 4.4e-36
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...........HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...........esdeeiekal 89 
                 k+ sl++ +ge+++++G+nG+GK+t +++++gl +p++Ge ++ g d+ + ++e+ +k+ig+++q  +++ +lt+ren            +++++e+al
  CTQ30574.1  22 KDFSLQVAKGEIYGFLGPNGSGKTTSIRMMCGLITPDSGEGTCLGMDIFT-QREKIKKKIGYMTQYFSMWGNLTIRENllfiarlysldRRRDRVERAL 119
                 899*********************************************99.9**********************************99888889***** PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 s+lgl+  +++ +    ++LSgG+kqr+ala+++l +p ll+lDEpta
  CTQ30574.1 120 SELGLTARQHQLA----KELSGGWKQRMALAACMLHEPVLLFLDEPTA 163
                 *******888888....*****************************97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.1
                 TTSSHHHHHHHHTTSS--SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  20 nGaGKStLlkllagllkpteGei 42 
                 +GaG + L + l +l +  e ++
  CTQ30574.1 232 SGAGLTLLESQLQRLPDI-EQTV 253
                 667766666666555553.3333 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1   0.00081       1.5       2      14 ..      34      46 ..      33      59 .. 0.89
   2 !   30.1   0.0   2.3e-10   4.1e-07     236     297 ..     134     192 ..      68     195 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00081
      AAA_21  2 nvliGpNgsGKSn 14
                 ++ GpNgsGK++
  CTQ30574.1 34 YGFLGPNGSGKTT 46
                5789********8 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 2.3e-10
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTH 297
                 elS G k+  al++ +l  +    ll++DEp +g +Pk+ r+++++l +ls++g+ ++++TH
  CTQ30574.1 134 ELSGGWKQRMALAACMLHEP---VLLFLDEPTAGVDPKARREFWQMLHQLSDRGISILVSTH 192
                 45666666656666666655...68************************************* PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.2e-07   0.00039      27     208 ..      34     203 ..       6     210 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.2e-07
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevse 125
                    +GpNGSGK+  +  ++ ++  +s      + l   i+ ++ek + k ++++ +f+  ++  +i+++ + i r  + + +     ++ e   +e+  
  CTQ30574.1  34 YGFLGPNGSGKTTSIRMMCGLITPDSG---EGTCLGMDIFTQREKIKKKIGYMTQYFSMWGNL-TIRENLLFIARLYSLDRR----RDRVERALSELGL 124
                 45689******9877777666665544...66777666777799999999*******999997.888888888888887777....5677777899988 PP

                 HHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
       SMC_N 126 llesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlekadkl 208
                   +++++ k +LSgG k+ +ala      + +   l +lDe  a  D k ++++ ++l++ s++   ++v ++  +  e+++k+
  CTQ30574.1 125 TARQHQLAK-ELSGGWKQRMALAAC----MLHEPVLLFLDEPTAGVDPKARREFWQMLHQLSDRgISILVSTHYMDEAERCHKV 203
                 888888887.5******98887754....667777889***********************98856666666655555555443 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.7e-07     0.001       3      45 ..       7      57 ..       5     130 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.7e-07
      AAA_23  3 kienfrsf..rdqei..dF.....skgltlItGpNGaGKTTildAiklaLyg 45
                 ++n++++  +  ++  dF     +  ++ + GpNG+GKTT ++ ++   + 
  CTQ30574.1  7 DVKNLNKHfgE-HHVvkDFslqvaKGEIYGFLGPNGSGKTTSIRMMCGLITP 57
                67888888852.332246666777778**************99999977665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0039       6.9      25      44 ..      33      52 ..      20      90 .. 0.75
   2 !    9.2   0.0    0.0005       0.9     323     364 ..     152     192 ..     143     193 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0039
      AAA_15 25 ltvliGkNnsGKSsileald 44
                +  + G+N+sGK++ ++++ 
  CTQ30574.1 33 IYGFLGPNGSGKTTSIRMMC 52
                66799*********998875 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0005
      AAA_15 323 knvilliEEPEahLHpqaqkvlikllkelandnktQviitTH 364
                 ++v+l+++EP a   p+a +++++ l  l++ +   ++++TH
  CTQ30574.1 152 EPVLLFLDEPTAGVDPKARREFWQMLHQLSDRGI-SILVSTH 192
                 5799*****************************9.9****** PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00026      0.47      62      89 ..     151     178 ..     106     179 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00026
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllelle 89 
                 + + l+fLDE  +++D++ +++  ++l+
  CTQ30574.1 151 HEPVLLFLDEPTAGVDPKARREFWQMLH 178
                 34789****************9999886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     7e-05      0.12      17      49 ..      26      58 ..      15      62 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7e-05
      AAA_29 17 ieidlkg.atlltGpsGsGKSTllDAiqalLvpa 49
                +++   g ++ + Gp+GsGK+T +  +  l++p+
  CTQ30574.1 26 LQVAK-GeIYGFLGPNGSGKTTSIRMMCGLITPD 58
                44543.348889**********987777777776 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002      0.35       3      75 ..      36     116 ..      34     200 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
                 EESSTTSSHHHHHHHHHHHH.....THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHH...T CS
         AAA   3 lyGppGtGKTllakavakel.....gvefleisgsellskyvgesekkirelfkeakeka.kpsilfiDEidalaksr...s 75 
                 + Gp G GKT+ ++ ++  +     + ++l ++  + + + ++++   + ++f+   +   +   lfi  +++l ++r   +
  CTQ30574.1  36 FLGPNGSGKTTSIRMMCGLItpdsgEGTCLGMDIFTQR-EKIKKKIGYMTQYFSMWGNLTiRENLLFIARLYSLDRRRdrvE 116
                 78***************998444333556666666666.3466666666666666655556557777777777777773332 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.9e-05      0.14      26     143 ..      33     160 ..      23     192 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.9e-05
      AAA_16  26 lvllsGesGvGKsslvrellralekd..ggif....lrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleealaavpelagaea. 116
                 +  + G+ G+GK++ +r+    ++ d  +g +    + ++ ++ +++i y + + ++  + ++ + ll  a+  +l++ r++ e+al++ +  a+++  
  CTQ30574.1  33 IYGFLGPNGSGKTTSIRMMCGLITPDsgEGTClgmdIFTQREKIKKKIGYMTqYFSMWGNLTIRENLLFIARLYSLDRRRDRVERALSELGLTARQHQl 131
                 55578***************9999998724443334444444445555553334444444444444444444457777777777777733333333335 PP

      AAA_16 117 .srllellkrllallsrder.plvlvlDd 143
                  + l   +k+ +al+++  + p++l+lD+
  CTQ30574.1 132 aKELSGGWKQRMALAACMLHePVLLFLDE 160
                 57777777777766666544369999996 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.4    0.0012       2.2      11      26 ..      37      52 ..      30     226 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0012
      AAA_22 11 tGesGtGKTtllrrll 26
                 G+ G+GKTt++r++ 
  CTQ30574.1 37 LGPNGSGKTTSIRMMC 52
                599*********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2376.44
//
Query:       CTQ30575.1  [L=321]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-17   61.9   0.0    2.3e-14   53.9   0.0    2.9  3  HlyD_3           HlyD family secretion protein
    5.6e-08   32.3   0.3      6e-06   25.6   0.3    2.3  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
     0.0023   17.7   0.0       0.14   12.0   0.0    2.5  2  Biotin_lipoyl    Biotin-requiring enzyme
     0.0072   16.1   0.9      0.029   14.2   0.0    2.4  3  Biotin_lipoyl_2  Biotin-lipoyl like
     0.0078   15.7   3.0      0.011   15.2   3.0    1.2  1  HBM              Helical bimodular sensor domain
  ------ inclusion threshold ------
      0.054   14.0   0.1       0.12   13.0   0.1    1.6  1  LPAM_1           Prokaryotic membrane lipoprotein lipid attac
        1.2    9.7   7.8       0.52   10.9   5.1    1.7  1  APG6_N           Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.022        55      10      32 ..      47      69 ..      44      85 .. 0.84
   2 !   53.9   0.0   9.1e-18   2.3e-14       1      82 [.     198     277 ..     198     296 .. 0.92
   3 ?   -2.0   0.0       2.3   5.9e+03      44      61 ..     301     317 ..     291     320 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.022
      HlyD_3 10 vvelnveegevvqagdelleiip 32
                +  + +++g+ v+ag+el++i  
  CTQ30575.1 47 IERILINKGDNVAAGQELVKIES 69
                777889**************976 PP

  == domain 2  score: 53.9 bits;  conditional E-value: 9.1e-18
      HlyD_3   1 tlrApvdGvvvelnveegevvqagdelleiippdtllveakvpaadlgsikkkgqkvtlkldqgsdytlkgkierisptvda 82 
                 t+ +pv  +v+++ +++ge  +ag+++ +++pp++++v++++p+a lg+ k +g+kv+l +d g+  ++ g i +isp+++ 
  CTQ30575.1 198 TIVSPVNAKVFDIIYRAGERPSAGKPIISLLPPENIKVRFFIPEAKLGKFK-IGSKVKLICD-GCAEPIAGVINYISPEAEF 277
                 699***********************************************5.*********8.**9************9875 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.3
      HlyD_3  44 aadlgsikkkgqkvtlkl 61 
                  +++g++k +gq+ ++++
  CTQ30575.1 301 LQQAGRMK-IGQPFDVEI 317
                 57899995.9*9999876 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.3   2.3e-09     6e-06      29     188 ..      46     275 ..      36     278 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.3e-09
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........................................XXXXXXXX........ CS
    HlyD_D23  29 wveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalk...........................................akkklkkke....... 77 
                  +e++ +n  gd+V++Gq+L++++s +   aq+ +l a +                                           +               
  CTQ30575.1  46 KIERILIN-KGDNVAAGQELVKIESFD---AQNIFLRAEEklsaesallrnlesgerpeeldiirsqikkaqsaesqvkrqlgR-------Yrnlyanh 133
                 59999999.**************9965...888899988888888899999999999999999998887666555555555550.......05555555 PP

                 ...............................XXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  78 ...............................lleaarerLrllgvseeqiaelektgkv..qktvtvkapisGvVteknvreGqyvqpgdtlftiadls 143
                                                +l a ++ +   + s  + a+le+++     +++t+ +p++  V +   r G++ ++g++++++   +
  CTQ30575.1 134 aislaewedirdeltqkgaqveelinqlkarQLPARQDEISKQR-SMVAAAKLERDKALwdVQQTTIVSPVNAKVFDIIYRAGERPSAGKPIISLLPPE 231
                 55555566666666666674445555443332222222221111.111234555555542235689********************************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 144 tVWveaevyeqqlalvkvgqkvevtvealpgktfeGkvdyiyptv 188
                 ++ v + ++e++l++ k+g+kv++  +  ++  ++G ++yi+p+ 
  CTQ30575.1 232 NIKVRFFIPEAKLGKFKIGSKVKLICDGCAE-PIAGVINYISPEA 275
                 ***************************9987.9**********86 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   5.6e-05      0.14      16      38 ..      47      69 ..      39      77 .. 0.77
   2 ?    3.1   0.0     0.032        83      42      72 ..     196     226 ..     172     227 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
                   ECSESSSTTCEE-TTSEEEEEEC CS
  Biotin_lipoyl 16 vvevlvkvGdkVkagqvlaevea 38
                   ++++l+++Gd V+agq l+ +e+
     CTQ30575.1 47 IERILINKGDNVAAGQELVKIES 69
                   77788888999999998888886 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.032
                    EEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl  42 emeieapkaGvvkeilvkeGdtvevgdllak 72 
                    +++i +p++ +v +i +  G+  ++g++++ 
     CTQ30575.1 196 QTTIVSPVNAKVFDIIYRAGERPSAGKPIIS 226
                    67899***********************986 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.2e-05     0.029      12      49 ..      46      83 ..      39      84 .. 0.86
   2 ?   -2.6   0.1         2     5e+03      36      49 ..     105     119 ..     101     123 .. 0.50
   3 ?   -1.4   0.0      0.85   2.2e+03       3      32 ..     197     226 ..     195     231 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
  Biotin_lipoyl_2 12 rVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaql 49
                     +++++++  G+ V aG+ L+ ++s + q+   +ae++l
       CTQ30575.1 46 KIERILINKGDNVAAGQELVKIESFDAQNIFLRAEEKL 83
                     89**********************99997666777765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2
  Biotin_lipoyl_2  36 ralqlalaq.aeaql 49 
                       + q ++aq ae q+
       CTQ30575.1 105 IRSQIKKAQsAESQV 119
                      555655555444443 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.85
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGdvLae 32 
                      ++I +pv+++V  +  + G r  aG  ++ 
       CTQ30575.1 197 TTIVSPVNAKVFDIIYRAGERPSAGKPIIS 226
                      689999999998888777777666666665 PP

>> HBM  Helical bimodular sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   3.0   4.4e-06     0.011     177     250 ..     100     172 ..      79     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.4e-06
                 HHHHHHHHH-GG.GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
         HBM 177 aeldqlrqalasdpraalqqlesalskYRaaleqfkaavaaieqarkemteqgdeivkisdeLyqiqtekrdse 250
                 +eld +r+++ +++ a++ q++  l++YR+   ++   +a+ e  r+e+t++g+++ +  ++L ++q+  r+ e
  CTQ30575.1 100 EELDIIRSQIKKAQSAES-QVKRQLGRYRNLYANHAISLAEWEDIRDELTQKGAQVEELINQLKARQLPARQDE 172
                 688999999999777765.79999********************************************999877 PP

>> LPAM_1  Prokaryotic membrane lipoprotein lipid attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   4.5e-05      0.12       1      17 [.       1      20 [.       1      20 [. 0.98

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.5e-05
      LPAM_1  1 MKKi...llalgalllLsGC 17
                M+K+   +++l  +l+L+GC
  CTQ30575.1  1 MRKPinvFIILISVLILTGC 20
                9******************* PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   5.1    0.0002      0.52      60     125 ..      83     150 ..      62     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
      APG6_N  60 ekeeeelleeLkelek..ereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaq 125
                  ++e++ll++L+  e+  e + ++++++++++ +++++++  r+ + y ++++ l+e e+ +d l+ +
  CTQ30575.1  83 LSAESALLRNLESGERpeELDIIRSQIKKAQSAESQVKRQLGRYRNLYANHAISLAEWEDIRDELTQK 150
                 57899999999999963256679****************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1037  (0.0578393); expected 358.6 (0.02)
Passed bias filter:                      668  (0.0372581); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 2592.65
//
Query:       CTQ30576.1  [L=566]
Description: putative acetyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-18   65.5   0.0    9.7e-18   64.7   0.0    1.4  1  Acetyltransf_5   Acetyltransferase (GNAT) domain
    7.8e-07   28.8   0.4    1.9e-06   27.5   0.3    1.8  2  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acetyltransf_5  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   1.1e-21   9.7e-18       1     101 []     325     426 ..     325     426 .. 0.93

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 1.1e-21
  Acetyltransf_5   1 LRyevFreemgaegeaaapeldiDefDavcdhllvideae.evVGtyRllrpdeae...rlegfysesefd.lsklaalrrrllElgRscvhpey 90 
                     LR++ +r+ + ++g++    +d D fD+++ h++++d +  e+ G+yR+++  e+    ++ g+ys+s+f+  ++  +  ++++E+gR ++++ y
      CTQ30576.1 325 LRERCYRDIGAGTGND----RDNDVFDESYYHIILWDPSDvEILGAYRVMPVGEQLaqhGVTGLYSNSLFKyHDNAYSCLEKCVEIGRGFIQKPY 415
                     8***************....****************988879*******999999876666*********97777788999************** PP

  Acetyltransf_5  91 Rnkralellwa 101
                     +++++l++lw+
      CTQ30576.1 416 QKSKVLDYLWQ 426
                     **********6 PP

>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.3   2.1e-10   1.9e-06       4     134 ..      68     194 ..      65     195 .. 0.83
   2 ?   -4.0   0.0       1.2     1e+04      26      39 ..     498     511 ..     497     523 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2.1e-10
  Acyltransferase   4 vtglenlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsi.pllgflmrllgfifidRksnaraagsleniselleegklvv 96 
                       ++ +n+pe g  ++++NH + +D l l + +  s+++ +++iia++ l  i p +++l   ++ +  +       ++   ++ + l++g +++
       CTQ30576.1  68 HHQFNNIPEHGATVVISNHPTVIDGLSLIHTV--SRVRSDIKIIANHVLPIIfPQVSELTIGIENMAGKM-----SHKKFREMNDHLRKGGVLI 154
                      566789************************88..55569*********8887788888877777766666.....6777888889********* PP

  Acyltransferase  97 iFPEG..trsregel..lpfkkGlvrlaakakkgvpivPvai 134
                      i P G   +++ ++l  +++  G+ +la++   ++ +vP+ i
       CTQ30576.1 155 ICPAGklANWSLSGLqeHKWNPGFLQLAMRN--NTALVPIHI 194
                      *****66566778887788888999998888..******976 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.2
  Acyltransferase  26 lDvlllwlllyksn 39 
                      +D+ +l++ll +++
       CTQ30576.1 498 ADWSMLNHLLREEG 511
                      79999999985554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4218.16
//
Query:       CTQ30577.1  [L=287]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-44  150.1   0.0    6.2e-44  150.1   0.0    2.1  2  YicC_N    YicC-like family, N-terminal region
    2.8e-34  116.9   7.3    2.8e-34  116.9   7.3    1.7  2  DUF1732   Domain of unknown function (DUF1732)
  ------ inclusion threshold ------
          2    8.6  10.3        1.2    9.3   1.0    2.7  2  Cnn_1N    Centrosomin N-terminal motif 1


Domain annotation for each model (and alignments):
>> YicC_N  YicC-like family, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.1   0.0     1e-47   6.2e-44       1     150 [.       2     153 ..       2     154 .. 0.93
   2 ?   -1.0   1.0      0.37   2.2e+03     106     106 ..     230     230 ..     180     283 .. 0.45

  Alignments for each domain:
  == domain 1  score: 150.1 bits;  conditional E-value: 1e-47
      YicC_N   1 ikSMTGfgraeae.eegkitveikSvNsRfldlslrlpeelraleeeirelikerlsRGkvevsvsleseeeeekalkvneellkaylealkelaeelg 98 
                 i+SMT+++r e + + g++ +e++SvN+R+l+  +rlpe++r+le+ +re+i++rl+RGkve+++++e++ +++ +l +ne+l+k++++a+++++ + +
  CTQ30577.1   2 IRSMTAYARREIKgDWGSAAWELRSVNQRYLETYFRLPEQFRSLEPVVRERIRARLTRGKVECTLRFEQDPSAQGELILNEKLAKQLVNAANWVKMQSD 100
                 89**********95559****************************************************999**********************99888 PP

      YicC_N  99 aeelslaellrlpgvle.eeeeedeleeallealeealealvemRerEGeaLk 150
                 + e++  ++lr+pgv+  +e++ d++ + +l+al+ al++++ +Re+EG+aLk
  CTQ30577.1 101 EGEINPVDILRWPGVMAaKEQDLDAIAADILAALDGALDDFIVARETEGQALK 153
                 99**************51233344479*************************8 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.37
      YicC_N 106 e 106
                 +
  CTQ30577.1 230 N 230
                 2 PP

>> DUF1732  Domain of unknown function (DUF1732)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.4   8.1e+03      12      26 ..     163     177 ..     153     183 .. 0.70
   2 !  116.9   7.3   4.8e-38   2.8e-34       1      85 []     203     287 .]     203     287 .] 0.99

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.4
     DUF1732  12 isEElvRlkshlkel 26 
                 +s E+ ++++h+ e+
  CTQ30577.1 163 VSGEVAKVRAHMPEI 177
                 677888888887765 PP

  == domain 2  score: 116.9 bits;  conditional E-value: 4.8e-38
     DUF1732   1 qevallaekldisEElvRlkshlkelrelleeeesvGrkLdFllQElnReanTigskandleitklvvelKseiekirEqvqNie 85 
                 qe++l+a+++d++EEl+Rl++h+ke+ ++l+++e+vGr+LdF++QE+nRe nT++sk+ ++e+t+ ++elK++ie++rEq+qNie
  CTQ30577.1 203 QELVLMAQRIDVAEELDRLEAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLIEQMREQIQNIE 287
                 79**********************************************************************************8 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   2.5     0.016        98      27      70 ..     193     236 ..     172     238 .. 0.81
   2 ?    9.3   1.0    0.0002       1.2      23      61 ..     242     285 ..     241     287 .] 0.84

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.016
      Cnn_1N  27 eerleklseeqkeellkenielkveveslqkelkekkkllreae 70 
                 e +le+++ eq   l++++i++ +e+  l+  +ke  + l++ e
  CTQ30577.1 193 EVQLENNRLEQELVLMAQRIDVAEELDRLEAHVKETYNILKKKE 236
                 3345566669999999****************999988888765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0002
      Cnn_1N  23 iyfLeerleklse.....eqkeellkenielkveveslqkelke 61 
                 + f+ +++++ s+     + + e+ ++ ielkv +e+++ ++++
  CTQ30577.1 242 LDFMMQEFNRESNtlaskSINAEVTNSAIELKVLIEQMREQIQN 285
                 56777777777777888788999******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1045  (0.0582855); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2242.63
//
Query:       CTQ30578.1  [L=248]
Description: putative carboxyvinyl-carboxyphosphonate phosphorylmutase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-70  236.5   0.1    3.1e-70  236.3   0.1    1.0  1  PEP_mutase       Phosphoenolpyruvate phosphomutase
    7.2e-05   22.3   0.0     0.0001   21.8   0.0    1.2  1  Pantoate_transf  Ketopantoate hydroxymethyltransferase


Domain annotation for each model (and alignments):
>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.3   0.1   3.5e-74   3.1e-70       1     236 [.       3     236 ..       3     239 .. 0.97

  Alignments for each domain:
  == domain 1  score: 236.3 bits;  conditional E-value: 3.5e-74
  PEP_mutase   1 lraLhakgeplvlpnawDalsakiveeagfkalatsSlavaaslGvpDgeelpleellaavraiaevvslPlivDledGygespeevaetvrrliaaGv 99 
                 ++aLh++++pl+l n+wDa sa+++++ag++al++sS+a+aa+lG++Dgee++++el+ +v++i  v +lPl+vDle+Gyg++ +++ +++rrl+++Gv
  CTQ30578.1   3 FNALHQQNQPLLLANVWDASSAQAAQQAGYQALGSSSAAIAAMLGYEDGEEMSFDELFYVVSRIKTVSELPLSVDLEAGYGATTSHIIDNIRRLAHLGV 101
                 789************************************************************************************************ PP

  PEP_mutase 100 vgvniEDkkkndaerqlldieefaekiaaaraaaeeagfvinARtdalllsagagleeaieRaraYaeAGAdgvfvpglqkdaeiaelvaavdvplnvv 198
                 +g+n+ED++  d++r+l d+e fa k++++ +a++   +++n Rtd++ll+ +++l +++ R+++Ya+ GA+g+fvp+++++++i+++v++v++plnv+
  CTQ30578.1 102 SGINLEDSHVVDGTRRLDDAERFAVKLQEITRACPG--LFVNVRTDTFLLNVQDALVQTLYRGQLYAKHGACGFFVPCVTRAEDITAIVHHVPLPLNVM 198
                 ********6668999999************999965..************************************************************* PP

  PEP_mutase 199 plkgtlsvaelaelGvarislgnhllraalaalreaae 236
                 ++++  ++++l++lGv+ris+gn++++a+ a l++ + 
  CTQ30578.1 199 CMPELADFSTLSTLGVKRISMGNFIYAATQARLKDLLC 236
                 *9999*************************99998765 PP

>> Pantoate_transf  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.2e-08    0.0001       6     128 ..       2     120 ..       1     123 [. 0.89

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.2e-08
  Pantoate_transf   6 dlrkmkeegekiamlTaydattAklvdeagvdviLVGDslgmvvlgyestlpvtleemiyhtkaVargakralvvadlPfgsyeaskeqalenA 99 
                      d+++++++++++     +da++A+++++ag +++  + ++   +lgye+  +++++e+ y+++ ++   ++  + +dl  g   a++++ ++n 
       CTQ30578.1   2 DFNALHQQNQPLLLANVWDASSAQAAQQAGYQALGSSSAAIAAMLGYEDGEEMSFDELFYVVSRIKTV-SELPLSVDLEAGYG-ATTSHIIDNI 93 
                      5788999*************************997777777889*********************777.889999****9865.9999****** PP

  Pantoate_transf 100 arllkeggadavKleggaevaetvkalve 128
                       rl +  g++ + le   +v++  ++l +
       CTQ30578.1  94 RRLAHL-GVSGINLEDS-HVVDGTRRLDD 120
                      **9998.*******987.78887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2000.25
//
Query:       CTQ30579.1  [L=352]
Description: putative methylated-DNA-(protein)-cysteine S-methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-27   95.4   0.2      4e-27   94.2   0.2    1.7  1  DNA_binding_1    6-O-methylguanine DNA methyltransferase, DNA
    1.2e-26   92.4   1.6    3.5e-26   91.0   1.6    1.8  1  Ada_Zn_binding   Metal binding domain of Ada
    2.7e-14   53.2   0.3    9.5e-14   51.4   0.3    1.9  1  HTH_18           Helix-turn-helix domain
    2.3e-08   34.7   0.0    1.1e-07   32.6   0.0    2.1  2  Methyltransf_1N  6-O-methylguanine DNA methyltransferase, rib
  ------ inclusion threshold ------
        1.6    8.2   4.8        2.6    7.6   0.2    3.4  3  HTH_Tnp_ISL3     Helix-turn-helix domain of transposase famil


Domain annotation for each model (and alignments):
>> DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.2   1.1e-30     4e-27       1      80 [.     266     345 ..     266     346 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 1.1e-30
                    HHHHHHHHHHTTS-TT-BEEHHHHHHHTT.TSCHHHHHHHHHTSSBTTTSGGGGEEBTTSBCCTTTTCHHHHHHHHHHTT CS
  DNA_binding_1   1 afqqrVwellrqIpyGkvttYgeiAkllgkpkaaraVgqalaanplailvPcHRVvgadgklggyagglerkralLeaEg 80 
                    +fq++Vw+ l+++++G++t Y+ iA ++gkp+a+raV++a++an++ai++PcHR++g+dg+++gy gg++rk +l+++E 
     CTQ30579.1 266 EFQRAVWRRLQHVSFGETTHYQSIAMEIGKPTATRAVAAANGANRVAIIIPCHRIIGKDGSMTGYGGGIARKIWLINHEA 345
                    6*****************************************************************************96 PP

>> Ada_Zn_binding  Metal binding domain of Ada
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   1.6   9.8e-30   3.5e-26       3      64 ..      13      74 ..      11      75 .. 0.98

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 9.8e-30
                    HHHHHHTSTTCCTTBEEEETTTTEEE-TT-SSS-S-SCCEEEESSHHHHHHTT-EEETTTTT CS
  Ada_Zn_binding  3 wqavlardaradgsFvyavkttgiyCrpsCparlPkrenveFfdtaaeAeaagfrpCkrcrP 64
                    +qa+l+r  +++g F+++vkttg++C   C+ar+P+renveF+++ + A  agfrpCk crP
      CTQ30579.1 13 YQALLERAVEFTGVFFVGVKTTGVFCISVCRARKPRRENVEFYNNFKSALDAGFRPCKVCRP 74
                    89***********************************************************9 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.3   2.6e-17   9.5e-14       3      79 ..     106     180 ..     105     181 .. 0.95

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 2.6e-17
                 HHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHH CS
      HTH_18   3 aalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyr 79 
                 ++ ++s+ +++r f + +g+t++++ r  Rl+ A ++L + +g+s +++A+++G+++ls F   ++kl+g  Ps+ r
  CTQ30579.1 106 RQHDISPERVRRWFLQNHGITFQAFQRMQRLNMALQEL-K-AGRSTTDVAFDSGYESLSGFGYTCKKLTGFAPSAQR 180
                 56789*********************************.6.8********************************977 PP

>> Methyltransf_1N  6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.2   7.8e+03      48      61 ..       6      19 ..       3      22 .. 0.83
   2 !   32.6   0.0     3e-11   1.1e-07       8      75 ..     189     260 ..     186     263 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.2
                     CHCCHHHHHHHHHH CS
  Methyltransf_1N 48 elpalaelkqalee 61
                     +++++ ++++ le+
       CTQ30579.1  6 SMQCDIWYQALLER 19
                     699******98886 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 3e-11
                      EETTEEEEEEEETTCEEEEEEEC-HHHCCHHHCCCTTTSC......CHCCHHHHHHHHHHHHHHHHS--B-SHC CS
  Methyltransf_1N   8 dsplgrlllagdEkgllaidlldkdtselkelpkllkqde......elpalaelkqaleeYfageekpaltlPl 75 
                       +plg+ +++++ +g++ +++ d  ++ ++e+++l  +        e+  +  ++q+++eYfag+++ ++ + l
       CTQ30579.1 189 TTPLGPMFVCATQRGICLLEFVDRRAL-ESEFSDLQRRFNasiiagENAHTRQAQQEITEYFAGQRQ-SFEVAL 260
                      69************************7.77777777777778899999*******************.665544 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2   0.00071       2.6      35      50 ..     106     121 ..      76     123 .. 0.85
   2 ?    0.5   0.0      0.12   4.2e+02      19      34 ..     138     153 ..     138     153 .. 0.92
   3 ?   -2.2   0.2      0.79   2.8e+03      43      51 ..     270     278 ..     269     279 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00071
  HTH_Tnp_ISL3  35 rqlgvSwtTVwrildr 50 
                   rq+++S+ +V+r++ +
    CTQ30579.1 106 RQHDISPERVRRWFLQ 121
                   89************76 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.12
  HTH_Tnp_ISL3  19 yilelllesrsvkavA 34 
                   ++l++l+ +rs ++vA
    CTQ30579.1 138 MALQELKAGRSTTDVA 153
                   5899***********9 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.79
  HTH_Tnp_ISL3  43 TVwrildry 51 
                    Vwr+l ++
    CTQ30579.1 270 AVWRRLQHV 278
                   69***9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2600.88
//
Query:       CTQ30580.1  [L=416]
Description: Chloride transporter, ClC family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-64  216.6  43.8    7.5e-64  216.2  34.3    2.5  3  Voltage_CLC  Voltage gated chloride channel


Domain annotation for each model (and alignments):
>> Voltage_CLC  Voltage gated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   1.0   0.00039       6.9     158     190 ..       8      40 ..       2      47 .. 0.87
   2 !    2.3   0.3    0.0046        83     276     315 ..      41      80 ..      38      83 .. 0.78
   3 !  216.2  34.3   4.2e-68   7.5e-64       2     353 ..      75     411 ..      74     412 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00039
                  .--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Voltage_CLC 158 alsllelilfvllGilgGllgalfvrlllkver 190
                  + +l  li++vl Gil+Gl g++ + +l+++++
   CTQ30580.1   8 KNHLIRLIAVVLTGILAGLSGMVLALILHAIQH 40 
                  578999*******************99999987 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.0046
                  HHHHHHHHHHHHHHHHHH-CTSSC...HHHHHHCCTHHHH CS
  Voltage_CLC 276 LviGAalGrlvglvlalllpgaassdpgafalvGmaafla 315
                  L++G ++G++vg v  l  + ++s++  ++a+v+ +a+ +
   CTQ30580.1  41 LAFGYSYGQIVGSVSFLQGVTESSWPRRIVAIVAGGAVAG 80 
                  7889999*****9999998888888767777776666544 PP

  == domain 3  score: 216.2 bits;  conditional E-value: 4.2e-68
                  HHHHHHHCCCCC-GGGSC-SHHHHHHHCTTSS---HHHHHHHHHHHHHHHHCTT-S-BTHHHHHHHHHHHHHHHHHHTT.--SHHHHHHHHHHHHHHH CS
  Voltage_CLC   2 ggllagllvklvapeaagsGipevkaalngvkgplslrvllvkflasvltvgsGlslGreGplvqiGAavgsglsrllklsrndrdrrlvaaGaAAGi 99 
                  gg++ag+ ++l+  +  g+   ++ aa++++ +p++  ++ +++l++++tv+ G +lGre +  ++GA+ + +++r+l+l +++  r+l+a+Ga+AG+
   CTQ30580.1  75 GGAVAGFGWWLL--GRYGRRRVSIAAAVANPCAPMPAGTTTIHALLQIVTVALGSPLGREVAPREMGALGAGMVARKLRLLEDE-TRTLIACGAGAGL 169
                  688899999888..778899999********************************************************98777.999********** PP

                  HHHHT-HHHHHHHHCTTTSTSS--TTHHHHHHHHHHHHHHHHHHCTTS-S-.T---...--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHC CS
  Voltage_CLC 100 AAaFnaPlgGvlfalEevsrefslrallpvfvasvvaalvlrlllgeepafgeveslfalsllelilfvllGilgGllgalfvrlllkverlfrklek 197
                  AA++n+Pl+G+lf+lE+++ +fs + +l+++++s++aa+++ l lg+e +++ ++s +al+   l++++l G ++G  ++lf + + +++++ r++  
   CTQ30580.1 170 AAVYNVPLAGALFSLEVMLLSFSWEKTLAAMMTSAIAAWTATLGLGDESQYH-FVS-SALPHTFLWWAILAGPILGTGAWLFRKATSAARSRARSN-- 263
                  **************************************************99.554.467777899***********************9877765.. PP

                  HHHHHHHHHHHHHHHHHHHCCCSCC.CSSSSCCHHHHHCTT-S-HHHHHH...HHHHHHHHHHHHHCTT-CSBSHHHHHHHHHHHHHHHHHHHHHH-C CS
  Voltage_CLC 198 lkikkrlepalvgllvgllglllpasvlgggyeliasllegstlllsllllllllllkllataltlgsgvpgGifaPsLviGAalGrlvglvlalllp 295
                  +++  +++ +l++ l+++l+l +p+ + g+g++ ++ +l++    l+l ++++ll+lk+++ ++ l  g+ gG+++P L++G+++  l+ ++++l +p
   CTQ30580.1 264 WQM--PVFCLLGFSLLAILSLYFPE-LPGNGKGPMQLALSDG---LPLSMVAVLLVLKMVVILAVLRGGAEGGLLTPGLAVGGLVSLLLCALWQLGFP 355
                  444..689*****************.*************998...9**************************************************** PP

                  TSSC...HHHHHHCCTHHHHHCCS-HHHHHHHHHHCC-.-GCCHHHHHHHHHHHHHHHC CS
  Voltage_CLC 296 gaassdpgafalvGmaaflagvtrapltaiviviEltg.dlelllplmlavliAkavad 353
                  g      + fa+vG+aafla+ +++plta+++v+E+t+ d+++l p +l+++ A ++++
   CTQ30580.1 356 GGD---KSSFAVVGAAAFLAASMQMPLTAVALVMEFTHmDHSYLAPALLCAAGAFLTCR 411
                  664...468*********************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3051.67
//
Query:       CTQ30581.1  [L=205]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-42  140.9  23.0    1.3e-21   76.2   5.2    2.5  3  UPF0126   UPF0126 domain
  ------ inclusion threshold ------
       0.54    9.6  11.7       0.17   11.2   4.5    2.4  2  ThrE      Putative threonine/serine exporter


Domain annotation for each model (and alignments):
>> UPF0126  UPF0126 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   6.5   1.2e-24   1.1e-20       2      76 ..       5      78 ..       4      80 .. 0.95
   2 !   76.2   5.2   1.5e-25   1.3e-21       2      77 ..      91     164 ..      90     165 .. 0.96
   3 ?   -1.7   0.1      0.32   2.8e+03       6      25 ..     175     194 ..     172     199 .. 0.73

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 1.2e-24
                HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHTTSSSSGHHHSSTCHHHHHHHHHHHHHHH CS
     UPF0126  2 ildaiGlaafavsGalvAlkkgldllgvvvlGvvTAvgGGvlRDvllgrevPvvllreelyataallgalvvvll 76
                +l +iG+ a a++Gal+A ++++d +gv+++++ TA+gGG +RD+llg+ +P+ +++++ y+++++++a++++++
  CTQ30581.1  5 VLYLIGITAEAMTGALAAGRRRMDTFGVIIIATATALGGGSVRDILLGH-YPLGWVKHPEYVIIVAVAAVLTTIA 78
                6889********************************************6.****************9**999986 PP

  == domain 2  score: 76.2 bits;  conditional E-value: 1.5e-25
                 HHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHTTSSSSGHHHSSTCHHHHHHHHHHHHHHHH CS
     UPF0126   2 ildaiGlaafavsGalvAlkkgldllgvvvlGvvTAvgGGvlRDvllgrevPvvllreelyataallgalvvvlla 77 
                 +lda+Gl++f+++Ga++Al+ g  ++++ + +v+T+v+GGvlRD++++r +P+v+ +e lya +++++a+++++l+
  CTQ30581.1  91 VLDALGLIVFSIIGAQIALDMGEGPVIASIAAVITGVFGGVLRDMFCKR-IPLVFQKE-LYAGISFAAAVLYIALQ 164
                 89**********************************************6.*****776.**************997 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.32
                 HHHHHHHHHHHHHHHHTTS- CS
     UPF0126   6 iGlaafavsGalvAlkkgld 25 
                 +++ +f  +  + Al+ +l 
  CTQ30581.1 175 LATLLFGFTARMLALRWKLG 194
                 67888888888888887665 PP

>> ThrE  Putative threonine/serine exporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.013   1.2e+02     204     237 ..      45      78 ..      39      82 .. 0.80
   2 ?   11.2   4.5   1.9e-05      0.17     112     193 ..      97     179 ..      91     182 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.013
        ThrE 204 avrDllsgdlvsGlaRlveailialaiafGivla 237
                 +vrD+l g++  G ++  e ++i++++a+ +++a
  CTQ30581.1  45 SVRDILLGHYPLGWVKHPEYVIIVAVAAVLTTIA 78 
                 7999999999999999988888877777665555 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 1.9e-05
        ThrE 112 vlaaglaaaafallf.ggdwidflvaflagllggllrlllakrglnsfvleavaa..flasllallavslglglnpdaiiigsil 193
                 ++++ +++a +al + +g +i+ ++a+++g++gg+lr ++ kr    f  e+ a+  f a++l++++ +  + +++d ++++ +l
  CTQ30581.1  97 LIVFSIIGAQIALDMgEGPVIASIAAVITGVFGGVLRDMFCKRIPLVFQKELYAGisFAAAVLYIALQH--YVSSHDVVVLATLL 179
                 5667777788888775788899999999************99999999999877621566666666666..55677888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1567.76
//
Query:       CTQ30582.1  [L=558]
Description: DNA ligase, NAD(+)-dependent [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-22   80.0   0.0    3.8e-21   75.5   0.0    2.1  1  DNA_ligase_aden  NAD-dependent DNA ligase adenylation domain
    6.2e-15   54.9   0.5    1.1e-14   54.1   0.5    1.4  1  DNA_ligase_OB    NAD-dependent DNA ligase OB-fold domain
    4.9e-06   26.1   0.1      0.046   13.6   0.0    2.9  3  HHH              Helix-hairpin-helix motif
     0.0031   18.1   0.0         17    6.1   0.0    3.6  3  HHH_5            Helix-hairpin-helix domain
  ------ inclusion threshold ------
       0.02   14.9   0.1       0.02   14.9   0.1    3.5  3  DUF3701          Phage integrase protein
      0.038   14.3   0.0      0.066   13.5   0.0    1.4  1  RNA_ligase       RNA ligase


Domain annotation for each model (and alignments):
>> DNA_ligase_aden  NAD-dependent DNA ligase adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   1.3e-24   3.8e-21       4     290 ..      30     282 ..      27     306 .. 0.87

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 1.3e-24
                      HHHHHHHHHHHHHHHHHHHCTT-SSC-HCHHHHHHHHHHHHHHHSGGG--TTSCCG-SSSS--CTS-EEE-SS-----EEE-SHHHHHHHHHHH CS
  DNA_ligase_aden   4 kkeleelrellrkydyeYyvldePlvsDaeyDrllkelkelEekfPelitpdSPtqrvgaeleaefkkveHeapllSLdnafdedelkafleri 97 
                      ++e+++l++++  ++ +Y+ + +  vsD +yD+l  +l +  + fP  +  d         ++    + +H ++   + +  ded+++ ++++ 
       CTQ30582.1  30 RQETSRLHQQIVAWKEAYWRQGASGVSDDVYDQLTLRLAQWRQCFPGATPEDDDL----PPPT---GDARHPVAHTGVRKLADEDSVARWMKN- 115
                      688999****************************************987666422....2333...4788999999999999********987. PP

                      HHHSSS--S-EEEEEEEESSEEEEEEEETTEEEEEEE-TTSSEEEB-HHHHCT-TTS-SB-SSSS--SEEEEEEEEE--HHHHHHHHHHHHHCT CS
  DNA_ligase_aden  98 eealgnkekvayvvelKiDGlavsllYengvlvraatRGdGttGedvtaNvktiksiPlklkvdnlpeelevRGEvylrkedFeklNeerleeg 191
                            k+   + +++K+DG+av+l+Y++g lv+a+ RGdG  Ge  ta +++i ++ + ++ +   ++ ++ GE +lr++   +        +
       CTQ30582.1 116 ------KS--DLWIQPKVDGVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGE--LADSVLQGELFLRRDGHVQ--------Q 191
                      ......23..37899***********************************************99..788889*******998643........2 PP

                      ----SSHHHHHHHHHT-SSHHHHHTS--EEEEEEEEEEESS---.SBHHHHHHHHHHCT--B-.TT-EEECSHHHHHHHHHHHHHHGGGSSS-E CS
  DNA_ligase_aden 192 eklfaNpRNaAaGslRqldpkitakrkLkliayglglvekeelevktqsealkvlkklglkvs.eelklvksieevleyieelekkRdeleyei 284
                      +    N+R   aG + + d++ +a  +L+++++++   ++    ++   ++ k l ++g+k s ++++ v++ie+v +  +++   R+ l++  
       CTQ30582.1 192 QAGGMNARAKVAGLMMRADAA-AALSQLDVFIWAWP--DG----PSDMRRRQKLLAQAGFKYSgQYTHPVSRIEQVAQWRQRWY--RSPLPFVS 276
                      333479***********9986.67899********9..55....34456778999******77255667899*********996..89****** PP

                      EEEEEE CS
  DNA_ligase_aden 285 DGvVvk 290
                      DGv+v+
       CTQ30582.1 277 DGVIVR 282
                      ***986 PP

>> DNA_ligase_OB  NAD-dependent DNA ligase OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.5   3.6e-18   1.1e-14       3      76 ..     313     386 ..     311     389 .. 0.95

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 3.6e-18
                    -XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  DNA_ligase_OB   3 kledievqVGRtGaltpvAeLepvelaGttVsratLhnedeierkdirigdtVvvekaGdvIPevvgvvlekre 76 
                    ++++i+++ GR+G+l++vAeLe  +l++++V+r+++ + ++++ +di +gd++ ++ aG+ IP+v +vv ++ e
     CTQ30582.1 313 QVRAIRFSTGRSGRLNVVAELEAQRLDDKRVQRVNVGSVSRWQMLDIGVGDQLQISLAGQGIPRVDAVVSRTAE 386
                    799*****************************************************************988765 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.9   8.7e+03      15      21 ..     427     433 ..     426     433 .. 0.82
   2 !    9.3   0.0   0.00035         1       9      21 ..     455     467 ..     453     472 .. 0.88
   3 !   13.6   0.0   1.5e-05     0.046       7      29 ..     514     536 ..     511     537 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.9
                 TSTT-SH CS
         HHH  15 alPGVGp 21 
                  + GVG+
  CTQ30582.1 427 NVDGVGE 433
                 689***7 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00035
                 SHHHHHTSTT-SH CS
         HHH   9 sreeLlalPGVGp 21 
                 ++e+L+a+PG+  
  CTQ30582.1 455 TVEQLQAVPGISA 467
                 89*********86 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 1.5e-05
                 TSSHHHHHTSTT-SHHHHHHHHH CS
         HHH   7 pasreeLlalPGVGpktAeaIls 29 
                 + s++++ +lPGVG+ +A++  +
  CTQ30582.1 514 AKSEAQWRTLPGVGEIRARQLVA 536
                 67999*************99876 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.15   4.6e+02       9      35 ..     360     386 ..     360     388 .. 0.90
   2 !    6.1   0.0    0.0057        17       5      46 ..     426     468 ..     422     473 .. 0.71
   3 !    5.8   0.0    0.0071        21      28      55 ..     511     538 ..     497     539 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.15
                 T--HHHHHHHHTTT--SHHHHHHS-HH CS
       HHH_5   9 GiGpktAlallsaGiesvedlaaadve 35 
                 G+G ++ ++l+ +Gi  v+++++ ++e
  CTQ30582.1 360 GVGDQLQISLAGQGIPRVDAVVSRTAE 386
                 89999999*************998766 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0057
                 HTSTT--HHHHHHHHTTT.--SHHHHHHS-HHHHHTSTTS-HH CS
       HHH_5   5 lsvsGiGpktAlallsaG.iesvedlaaadveeLakipGiGkk 46 
                 l v+G+G+ + + +  +  ++ +   +a++ve+L+++pGi++ 
  CTQ30582.1 426 LNVDGVGENLWRVIQQQNpMTHIFSWLALTVEQLQAVPGISAA 468
                 667777777777777775233466668899**********986 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0071
                 HHHHS-HHHHHTSTTS-HHHHHHHHHHH CS
       HHH_5  28 dlaaadveeLakipGiGkktAeriilel 55 
                  laa+++++  ++pG+G+ +A++++  l
  CTQ30582.1 511 LLAAKSEAQWRTLPGVGEIRARQLVAFL 538
                 58889999999***********998765 PP

>> DUF3701  Phage integrase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.27     8e+02       9      23 ..     102     116 ..      95     161 .. 0.80
   2 ?   -2.7   0.9       2.1   6.2e+03      41      53 ..     258     270 ..     254     270 .. 0.79
   3 ?   14.9   0.1   6.8e-06      0.02      51      74 ..     520     542 ..     510     552 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.27
     DUF3701   9 aPalsdavarWlspr 23 
                 + a +d varW++++
  CTQ30582.1 102 KLADEDSVARWMKNK 116
                 556789999999865 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.1
     DUF3701  41 arinrrgkrWwra 53 
                 + + + ++rW+r+
  CTQ30582.1 258 EQVAQWRQRWYRS 270
                 56778899***95 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 6.8e-06
     DUF3701  51 wravprlGaakArrieafLaahae 74 
                 wr++p++G+ +Ar+++afL+ h++
  CTQ30582.1 520 WRTLPGVGEIRARQLVAFLH-HPD 542
                 9******************6.555 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.2e-05     0.066       3      69 ..     119     183 ..     117     217 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.2e-05
                 EEEEEE-SSEEEEEEEETT..EEEEETTCEB.CTTTHHHHHHTHHHHHHHH..HHHHH....ECCEEEEEEEES CS
  RNA_ligase   3 vvvtEKlDGtnfriylvke..vgvasRsqil.pfgeekfkefkrwaaalrk..klkekla..neelilyGElig 69 
                 ++++ K+DG  +++++ ++  v+++sR+  l +           w a  r+  +l++ ++    + +l+GEl+ 
  CTQ30582.1 119 LWIQPKVDGVAVTLVYRQGrlVQAISRGDGLrG---------EAWTARARQipALAKVMTgeLADSVLQGELFL 183
                 79999***********87799**********32.........334444444444444444664469******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3935.34
//
Query:       CTQ30583.1  [L=207]
Description: guanylate kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.5e-70  234.7   0.0    6.4e-70  234.5   0.0    1.0  1  Guanylate_kin    Guanylate kinase
     0.0011   19.4   0.5      0.008   16.6   0.5    2.0  1  AAA_16           AAA ATPase domain
     0.0017   18.3   0.1     0.0063   16.4   0.0    1.9  2  RsgA_GTPase      RsgA GTPase
     0.0023   18.1   0.0      0.011   15.9   0.0    2.2  1  AAA_33           AAA domain
     0.0033   17.5   0.0       0.01   15.9   0.0    2.0  1  MMR_HSR1         50S ribosome-binding GTPase
     0.0035   17.6   0.0       0.03   14.6   0.0    2.1  2  AAA_22           AAA domain
     0.0069   16.9   0.0     0.0074   16.8   0.0    1.4  1  ABC_tran         ABC transporter
  ------ inclusion threshold ------
      0.048   14.2   0.0       0.22   12.1   0.0    2.1  1  AAA_18           AAA domain
      0.084   13.3   0.0       0.32   11.4   0.0    2.0  1  AAA              ATPase family associated with various cellul
      0.089   12.5   0.0       0.13   12.0   0.0    1.2  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.12   12.2   0.1       0.29   10.9   0.1    1.7  1  CPT              Chloramphenicol phosphotransferase-like prot
       0.18   11.7   0.0       0.41   10.5   0.0    1.6  1  Rad17            Rad17 P-loop domain


Domain annotation for each model (and alignments):
>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.5   0.0   4.3e-73   6.4e-70       3     182 .]       5     186 ..       3     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 234.5 bits;  conditional E-value: 4.3e-73
                    SEEEEESTTTSSHHHHHHHHHHHSTTTEE.E--EEESS---TTS-TTTSEEE--HHHHHHHHHTTTEEEEEEETTEEEEEEHHHHHHHHHTTSEEE CS
  Guanylate_kin   3 rpvvlvgpsgaGksslkkaLlselpekfg.vsvshtTrdprkgevdGkdYyFvskeemekdiskneflEaaefsgnlygtsveaieevlekgkivi 97 
                    +++++++psgaGkssl++aLl+++p +++ vsvshtTr+pr+gev+G++Y+Fv+++e+ ++i +n+flE+ae+ gn+ygts++aie+vl++g +v+
     CTQ30583.1   5 TLYIVSAPSGAGKSSLIQALLKTQPLYDTqVSVSHTTRAPRPGEVHGEHYFFVNHDEFRSMIGENAFLEHAEVFGNYYGTSRKAIEQVLATGVDVF 100
                    689*************************77****************************************************************** PP

                    EE--CHHHHHHHHTTTTEEEEEEEESSHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHGGG.CSSEEEEESSHHHHHHHHHHHHHHH CS
  Guanylate_kin  98 LDvdiqavkqlrkaelspiivFikppslkelqrrlksrgkeqeeklakrlaaaekelqey.efdvvivnddleealkklkelleae 182
                    LD+d+q+++q+rk ++ ++++Fi pps++el+rrl++rg+++ee++akr+a+a +e+++y e+d++ivndd+++al++lk++++ae
     CTQ30583.1 101 LDIDWQGAQQIRKSMPGARSIFILPPSKDELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYaEYDYLIVNDDFDTALSDLKNIIRAE 186
                    **********************************************************************************9975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.5   5.4e-06     0.008      25     154 ..       5     182 ..       1     201 [. 0.47

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.4e-06
      AAA_16  25 elvllsGesGvGKsslvrellr..alekd....................ggiflrgkcdqlesaipy.....salaqalareellrqlldeaesaelea 96 
                  l ++s +sG GKssl+++ll+  +l  d                    +                y     + + +++ +   + + ++    +  + 
  CTQ30583.1   5 TLYIVSAPSGAGKSSLIQALLKtqPLY-DtqvsvshttraprpgevhgeH----------------YffvnhDEFRSMIGE-NAFLEHAEV-FGNYYGT 84 
                 6789****************9843222.1334444444444444443221................122221223333311.222222222.1112222 PP

      AAA_16  97 wrekleeala.......................................avpelagaea...........srllellkrllallsrderplvlvlDdlq 145
                  r+++e++la                                               ++           +r++++++++  +++      ++v Dd++
  CTQ30583.1  85 SRKAIEQVLAtgvdvfldidwqgaqqirksmpgarsifilppskdeldrR-------LRgrgqdseeviaKRMAQAVAEMSHYAEY---DYLIVNDDFD 173
                 22222222224444444444444444444444666666665533333331.......22444444422335555555555555554...2788888888 PP

      AAA_16 146 wadeaslql 154
                  a ++  ++
  CTQ30583.1 174 TALSDLKNI 182
                 776665555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.2e-06    0.0063      99     143 ..       4      43 ..       1      54 [. 0.82
   2 ?   -1.1   0.0         1   1.5e+03      63      99 ..     150     185 ..     142     190 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.2e-06
                  TSEEEEECSTTSSHHHHHHHHCTT-----S--------------S CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTta 143
                  + + ++  +SG+GKS+Li all ++ l   +vs +     hTT+a
   CTQ30583.1   4 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVS-----HTTRA 43 
                  56778889**************9988888888875.....67765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1
                  HHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  63 eeleelkeelealgyevllvsaktkegleelkellkd 99 
                    +++++e  + ++y+ l+v+ +  ++l++lk+ ++ 
   CTQ30583.1 150 M-AQAVAEMSHYAEYDYLIVNDDFDTALSDLKNIIRA 185
                  3.56667777778888899988888999999888765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.2e-06     0.011       7     127 ..      12     147 ..       6     163 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.2e-06
      AAA_33   7 lpGsGKstlaerllkklg..avllssdt.....................lrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsr 82 
                 ++G+GKs l++ llk ++   + +s                        ++r + g+  +   + ++v  + y++ ++ ++++l+ g +v ld  +  +
  CTQ30583.1  12 PSGAGKSSLIQALLKTQPlyDTQVSVSHttraprpgevhgehyffvnhdEFRSMIGE--NAFLEHAEVFGNYYGTSRKAIEQVLATGVDVFLDIDWQGA 108
                 79************9999983345544434777777766666666666656656543..44558899**************************877777 PP

      AAA_33  83 rerarflklarrlgvpvrivvvetdeetlkeRlakRaangddrse 127
                 ++ ++ +  ar      +i ++ ++ ++l +Rl+ R +++++ + 
  CTQ30583.1 109 QQIRKSMPGAR------SIFILPPSKDELDRRLRGRGQDSEEVIA 147
                 77766666666......8******************998654333 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.9e-06      0.01       8      48 ..      13      54 ..       8     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.9e-06
                TTSSHHHHHHHHHTS...TEEESSSTTSSSSEEEEEEEETTEEE CS
    MMR_HSR1  8 pNvGKStLinaltge...kaivsdkpgtTrdinegrvklkgkei 48
                + +GKS+Li+al+++        +   tTr ++ g+v+  g+++
  CTQ30583.1 13 SGAGKSSLIQALLKTqplYDTQVSVSHTTRAPRPGEVH--GEHY 54
                579**********98553224457789******99998..5444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     2e-05      0.03       5      34 ..       4      33 ..       1     104 [. 0.81
   2 ?    1.3   0.0      0.26   3.8e+02      63     103 ..     130     176 ..     105     200 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2e-05
      AAA_22  5 agilvvtGesGtGKTtllrrlleqldeeak 34
                 ++ +v ++sG+GK+ l++ ll++ + +  
  CTQ30583.1  4 GTLYIVSAPSGAGKSSLIQALLKTQPLYDT 33
                67899******************9876544 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.26
      AAA_22  63 alglelkaerlsseell.ealeqalrarav....ielliiDEaqh.l 103
                 +l+++l +++++see++ ++++qa+ + +       l++ D+++  l
  CTQ30583.1 130 ELDRRLRGRGQDSEEVIaKRMAQAVAEMSHyaeyDYLIVNDDFDTaL 176
                 45555666788888888888888888877777777777778777755 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     5e-06    0.0074      10      88 ..       3      92 ..       1     196 [. 0.76

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5e-06
                TTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTCHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxx RF
    ABC_tran 10 egekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..............esdeeieka 88
                +g+++ +  ++GaGKS+L+++l++       ++ +  +    ++ e+  ++  ++ ++   f+ + ++en              +s++ ie++
  CTQ30583.1  3 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRAPRPGEVHGEHYFFVNHD--EFRSM-IGENaflehaevfgnyygTSRKAIEQV 92
                6788888889**************9998888887776555555555555555555555..55555.666666666666666666333334444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015      0.22       2     119 ..       8     144 ..       8     155 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpealdeskrldedkldklldaleenss.......aleegknlvidghlaele.seaa 91 
                 +++ ++G+GK++l ++L k   +  ++++  ++ + ++ ++ + ++  +   de + +   +a+ e+++       +        i+++la  +    +
  CTQ30583.1   8 IVSAPSGAGKSSLIQALLKTQPLyDTQVSVSHTTRAPRPGEVHGEHYFFVNHDEFRSMIGENAFLEHAEvfgnyygT---SRK-AIEQVLATGVdVFLD 102
                 577899***********888744544444445555555555555334444444444444444444444444443231...222.333333333322222 PP

      AAA_18  92 kdikk..............vvLtaspeelleRlekRgyeeak 119
                 +d+++              ++L  s++el +Rl+ Rg+ + +
  CTQ30583.1 103 IDWQGaqqirksmpgarsiFILPPSKDELDRRLRGRGQDSEE 144
                 233333345555666777999999999999999999987755 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00022      0.32       2      52 ..       8      95 ..       7     193 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00022
                EEESSTTSSHHHHHHHHHHHH..........THE.............EEEEETTTCSSS...............STTHHHHHHHHHHHH CS
         AAA  2 llyGppGtGKTllakavakel..........gve.............fleisgsellsk...............yvgesekkirelfke 52
                +++ p G GK++l++a+ k+           + +             ++ ++  e++s+               y g s k i++++++
  CTQ30583.1  8 IVSAPSGAGKSSLIQALLKTQplydtqvsvsH-TtraprpgevhgehYFFVNHDEFRSMigenaflehaevfgnYYGTSRKAIEQVLAT 95
                6789****************533333332330.03333333333333666666666666888888888888888999999999988865 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.5e-05      0.13       2      28 ..       8      36 ..       7      64 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.5e-05
  Viral_helicase1  2 vvhGvpGcGKStlirkllrts....liltvn 28
                     +v++  G+GKS+li+ ll+t+       +v+
       CTQ30583.1  8 IVSAPSGAGKSSLIQALLKTQplydT--QVS 36
                     577778**************886422..222 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1    0.0002      0.29       8     153 ..      11     165 ..       4     182 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0002
                 E-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGT.......STTSEEEETTSEEE............-HHHHHHHHHHHHHHHHHHHTT-EEE CS
         CPT   8 GgsssGKsslaralqevldepwlhlgvDafvealppkrqd.......eadglefeteleei............gpeldlllaalyeavaamaraGnnvi 87 
                   s +GKssl +al ++ +    ++ v   + a +p  ++       + d+                        ++   + + ++a++ ++++G +v 
  CTQ30583.1  11 APSGAGKSSLIQALLKTQPLYDTQVSVSHTTRAPRPGEVHgehyffvNHDE---------FrsmigenaflehAEVFGNYYGTSRKAIEQVLATGVDVF 100
                 56889*********9997766666666666666555555544444443333.........3334455556776778888999999************** PP

                 EEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT.....HHHHHTTGGGTT---SE CS
         CPT  88 vDdvilekewlvdllrrllsgldvllVGvrcplevlerRelergdRepG.....laalqaeavHagaeyDl 153
                 +D + ++++   + +r+ + g + +++ +  + ++l+rR ++rg          +a+  ae+  ++aeyD+
  CTQ30583.1 101 LD-IDWQGA---QQIRKSMPGARSIFI-LPPSKDELDRRLRGRGQDSEEviakrMAQAVAEMS-HYAEYDY 165
                 *9.777777...356677778888776.45566688888888886444312222222223322.3456665 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00028      0.41      47     112 ..       6      81 ..       1      95 [. 0.66

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00028
       Rad17  47 iLLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdn...........qksdfkgltekesrflsqiesfkel 112
                 + ++s PsG gks  ++ L k       + + + + + p             ++++f++++  +  fl   e+f ++
  CTQ30583.1   6 LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRAPRPgevhgehyffvNHDEFRSMIGENA-FLEHAEVFGNY 81 
                 6789****************987655555554444455432222333334566677777776665.77777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      654  (0.0364772); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1469.05
//
Query:       CTQ30584.1  [L=91]
Description: RNA polymerase, omega subunit [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-15   57.1   0.1      2e-15   56.4   0.1    1.3  1  RNA_pol_Rpb6  RNA polymerase Rpb6


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb6  RNA polymerase Rpb6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.1   1.1e-19     2e-15       3      47 ..      10      59 ..       8      60 .. 0.84

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 1.1e-19
                  TTSS--HHHHHHHHHHHHHHH..........HTSS-SSSSTTCHHHHTT-S CS
  RNA_pol_Rpb6  3 tskvltrYelvriaakRArQieeg.e.....sletqkpvviAlrEiaegki 47
                  ++k+++r+ lv++aa+RArQ++ g +     + e++k +viAlrEi+eg+i
    CTQ30584.1 10 VEKIGNRFDLVLVAARRARQMQVGgKdplvpE-ENDKTTVIALREIEEGLI 59
                  79*******************77555455433.59**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 743.38
//
Query:       CTQ30585.1  [L=706]
Description: bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-53  179.9   0.8      5e-53  179.0   0.8    1.4  1  HD_4        HD domain
    1.3e-35  122.2   0.3    4.1e-35  120.6   0.0    2.0  2  RelA_SpoT   Region found in RelA / SpoT proteins
    8.9e-22   76.9   0.0    2.4e-21   75.6   0.0    1.8  1  TGS         TGS domain
    4.4e-15   56.0   1.9    1.5e-14   54.3   1.1    2.3  2  ACT_4       ACT domain
    5.4e-13   49.2   2.3    1.5e-12   47.8   0.4    2.5  3  HD          HD domain
  ------ inclusion threshold ------
      0.016   15.7   0.1      0.016   15.7   0.1    2.5  3  TFIIS_M     Transcription factor S-II (TFIIS), central domain
       0.07   13.3   0.0       0.59   10.3   0.0    2.5  2  DUF2007     Putative prokaryotic signal transducing protein
       0.13   12.0   0.4       0.28   10.9   0.4    1.5  1  EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like


Domain annotation for each model (and alignments):
>> HD_4  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.0   0.8   2.2e-56     5e-53       1     155 [.      26     175 ..      26     176 .. 0.98

  Alignments for each domain:
  == domain 1  score: 179.0 bits;  conditional E-value: 2.2e-56
        HD_4   1 AlelaaelhagqrkltgepllahalevAailaelgldaetviAalLhdvveda.lsleeirerfGeevarLvegvsklkrlqkvaaadeaeekaeqven 98 
                 A+ +a+++h+gq++ +gep+++h+++vA ilae++ld et++AalLhdv+ed+ ++++++++ fG++va+Lvegvskl++l+        ++k++q+en
  CTQ30585.1  26 AYLVARDAHEGQTRSSGEPYITHPVAVACILAEMKLDYETLMAALLHDVIEDTpATYQDMEQLFGKSVAELVEGVSKLDKLKFR------DKKEAQAEN 118
                 56689************************************************9999************************999......99******* PP

        HD_4  99 lRkmLlAmveDirvvliklAdrlqtlrslaaakeekrrdvaretldiyaplAnrlGi 155
                 +Rkm++Amv+Dirv+liklAdr++++r+l + +++krr++aretl+iy+plA+rlGi
  CTQ30585.1 119 FRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETLEIYSPLAHRLGI 175
                 *****************************9999***********************8 PP

>> RelA_SpoT  Region found in RelA / SpoT proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.6   3.6e+03      29      48 ..     129     145 ..      95     214 .. 0.53
   2 !  120.6   0.0   1.8e-38   4.1e-35       1     115 [.     235     344 ..     235     346 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.6
                 TSEEEEEEESSHHHHHHHHH CS
   RelA_SpoT  29 DligiRvivefkddvyevle 48 
                 D   iRvi+ +  d  + ++
  CTQ30585.1 129 D---IRVILIKLADRTHNMR 145
                 3...4444444333332222 PP

  == domain 2  score: 120.6 bits;  conditional E-value: 1.8e-38
                 EEE--HHHHHHHHHHCT--CCCCCCCSSTSEEEEEEESSHHHHHHHHHHHHT-SSSEEEEEEETSTSHCTTCCSEEEEEEEETTEEEEEEEEEEEEEHH CS
   RelA_SpoT   1 gRvKslysiieKlerkgikveekfeeitDligiRvivefkddvyevlelikklwdvkpkrfkdyiaepkengYrslHtvvssekgeekvlvEiQiRtia 99 
                 gR K+lysi+ K+  k+ +    f++i+D++++Rviv++ d +y+vl+ +++l++++p+rfkdyia+pk+ngY+slHt +    g+++v+vE+QiRt +
  CTQ30585.1 235 GREKHLYSIYCKMVLKE-Q---RFHSIMDIYAFRVIVHDADICYRVLGQMHSLYKPRPGRFKDYIAIPKANGYQSLHTSM---IGPHGVPVEVQIRTED 326
                 69**************9.6...8********************************************************9...**************** PP

                 HHHHHH..HHHHHHHHCT CS
   RelA_SpoT 100 mdawae..iehhlrYkek 115
                 md++ae  +++h+ Yke+
  CTQ30585.1 327 MDQMAEmgVAAHWAYKEH 344
                 ****************97 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   1.1e-24   2.4e-21       1      60 []     389     448 ..     389     448 .. 0.99

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 1.1e-24
                 EEEEETTSSEEEEETTB-HHHHHHHHSTTHHHHEEEEEECSEEEETTSBB-SSEEEEEEE CS
         TGS   1 irvytPdGkvpdlprgatveDfAykIhrslakkfiyAlVnGqrvgldhvLedgdvveIvt 60 
                 i+v+tP+G++++lp gat++DfAy++h+++++++++A+V+ q ++l+++L +g++veI+t
  CTQ30585.1 389 IYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLSSGQTVEIIT 448
                 79********************************************************98 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.4   5.5e+03      50      75 ..     459     484 ..     452     485 .. 0.80
   2 !   54.3   1.1   6.6e-18   1.5e-14       2      80 .]     626     703 ..     625     703 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.4
       ACT_4  50 ikitveVkdvehLsrviakLraipgV 75 
                 +++ v+ k ++++++++++L++ ++V
  CTQ30585.1 459 LNFVVSSKARAKIRQLLKNLKRDDSV 484
                 56677778889999999**9998877 PP

  == domain 2  score: 54.3 bits;  conditional E-value: 6.6e-18
       ACT_4   2 nesytvrleveaedrkglLaditqviseekanivsvnaktrkkdglaeikitveVkdvehLsrviakLraipgVisVeR 80 
                 ++++ ++++v + + +g+La++t++i+ +  ni+s+n++++ +  + +  i++  +d+ hL+++++k+r +p+Vi+V+R
  CTQ30585.1 626 AQEFITEIKVDMFNHQGALANLTAAINTASSNIQSLNTEEK-DGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTR 703
                 578*************************************6.5999********************************9 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.4   6.7e-16   1.5e-12       1     122 []      45     144 ..      45     144 .. 0.78
   2 ?   -0.3   0.0      0.54   1.2e+03      77     119 ..     196     261 ..     170     275 .. 0.55
   3 ?   -2.3   0.0       2.1   4.8e+03      27      91 ..     273     346 ..     255     367 .. 0.59

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 6.7e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH CS
          HD   1 rleHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgldledvaklirehheswegkkrpr 99 
                 +++H+++Va++++++  d++       +l+aaLlHD++++++  +++        ++   k  ae+++ v k+++l++ d  ++ +e+++++ ++    
  CTQ30585.1  45 YITHPVAVACILAEMKLDYE-------TLMAALLHDVIEDTPATYQD-------MEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMA---- 125
                 689*****************.......**************776444.......33445555555555555555555555678888888888766.... PP

                 HHHCCTSCHHHHHHHHHHHHHHH CS
          HD 100 glaerqlslearivklaDrlaam 122
                     + ++++++++klaDr+++m
  CTQ30585.1 126 ----MVQDIRVILIKLADRTHNM 144
                 ....99***************98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.54
                 H.HHHHHHHHHTTCCHHHHHHHH....................H....HHHCCTSCHHHHHHHHHHHH CS
          HD  77 d.ledvaklirehheswegkkrp....................r....glaerqlslearivklaDrl 119
                   +++v+k++r +++ +  k                       +    + ++++  +e+r  +++D +
  CTQ30585.1 196 RvIKEVVKAARGNRKEMIQK--IlseiegrlqeagipcrvsgrEkhlySIYCKMVLKEQRFHSIMDIY 261
                 35566666666666665522..1234444444444444444331344455555555555555555554 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.1
                 HHHHHHHHTTTTHHHHTS..HHH.........HHH.CTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH CS
          HD  27 llllaaLlHDiGkgpfgdafekk.........eee.fekflaHekvgaeilrevekrlgldledvaklirehhes 91 
                 + ++ + +H + k+++g++ + +         + + +  +  H +  +  +r +  ++   +  +a+++ + h+ 
  CTQ30585.1 273 CYRVLGQMHSLYKPRPGRFKDYIaipkangyqS-LhTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGG 346
                 566677777777777776555556665554432.13555555666666666665555544444445544444444 PP

>> TFIIS_M  Transcription factor S-II (TFIIS), central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.8     4e+03      70      70 ..     154     154 ..      70     221 .. 0.62
   2 ?   15.7   0.1   7.1e-06     0.016      47      92 ..     463     509 ..     455     521 .. 0.82
   3 ?   -1.7   0.0       1.8   4.1e+03      25      64 ..     623     660 ..     603     676 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.8
                 H CS
     TFIIS_M  70 L 70 
                  
  CTQ30585.1 154 K 154
                 1 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 7.1e-06
                 ---HHHHHHHHHHHHHS-TT-HHHHHTSSSS--STT.TTS---TTTS CS
     TFIIS_M  47 tdkkykqkvrslvfNLkdkkNpeLrrrvlsgeispe.klvkmspeEl 92 
                 +++k ++k+r+l+ NLk+++  +L rr+l+ ++  + kl++  pe  
  CTQ30585.1 463 VSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSrKLAEIPPENI 509
                 67899*************************99965425777766655 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.8
                 --THHHHHHHHHHHHHHHT------HHHHHHHHHHHHHS- CS
     TFIIS_M  25 eedveelaaeiEealfekekkstdkkykqkvrslvfNLkd 64 
                 +e ++e+ +ei   +f+  ++    + ++ + +  +N++ 
  CTQ30585.1 623 KETAQEFITEIKVDMFN--HQGALANLTAAINTASSNIQS 660
                 55778888888888988..344556677777777777654 PP

>> DUF2007  Putative prokaryotic signal transducing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.9   6.6e+03      11      33 ..     173     195 ..     165     197 .. 0.82
   2 ?   10.3   0.0   0.00026      0.59      16      55 ..     220     271 ..     217     272 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.9
     DUF2007  11 veaelikslLeeagIeavvkdef 33 
                 + ++ ik+ Lee g ea+  +++
  CTQ30585.1 173 LGIHHIKTELEELGFEALYPNRY 195
                 568899999***99999877776 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00026
     DUF2007  16 ikslLeeagIeavvkdeftssileGa..lgelp............vrilVaeed 55 
                 i+++L+eagI+++v ++    +++ +  + +l+            +r+ V+++d
  CTQ30585.1 220 IEGRLQEAGIPCRVSGRE-KHLYSIYckM-VLKeqrfhsimdiyaFRVIVHDAD 271
                 899***********9997.7777777542.444556666666666777777776 PP

>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   0.00012      0.28      31      98 ..      68     133 ..      63     137 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
  EMC3_TMCO1  31 sellqkllidkkkmekeqkrekelqkrarelqkngdklklkklekrqeelmedqsemmmdqmkpmivt 98 
                 + ll+ +  + ++   +q++e+ + k + el +  +kl + k+++++e  +e+ ++m+m +     v+
  CTQ30585.1  68 AALLHDVI-E-DTPATYQDMEQLFGKSVAELVEGVSKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVI 133
                 55666654.3.44799********************************************98776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 4905.07
//
Query:       CTQ30586.1  [L=229]
Description: tRNA (Guanosine-2'-O-)-methyltransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-36  126.2   0.1    1.4e-36  125.8   0.1    1.2  1  SpoU_methylase   SpoU rRNA Methylase family
    2.6e-24   84.6   2.0    4.3e-24   83.9   2.0    1.4  1  SpoU_methylas_C  SpoU, rRNA methylase, C-terminal
  ------ inclusion threshold ------
      0.059   13.2   0.0        0.1   12.4   0.0    1.4  1  RuvC             Crossover junction endodeoxyribonuclease Ruv
      0.065   13.2   2.6        1.1    9.2   0.5    2.3  2  SLATT_1          SMODS and SLOG-associating 2TM effector doma


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   0.1   3.2e-40   1.4e-36       2     142 .]      20     159 ..      19     159 .. 0.96

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 3.2e-40
                     EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST..T-SEGCCSHHH CS
  SpoU_methylase   2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl..kgkslseidlk 94 
                     l+v ++++++p+N++a++Rta+a+g++e++ v p s     ++++ aaag+ +++++k++ ++++a+ +lk +g++++at+l  k+ +++eid++
      CTQ30586.1  20 LTVCMEQVHKPHNVSAVIRTADAVGVHEVHAVWPSSR---MRTMASAAAGSNSWVQVKTHRTIADAVGHLKGQGMQILATHLsdKAIDFREIDYT 111
                     7899*****************************9998...8999************************************9955666777***** PP

                     TTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHHH CS
  SpoU_methylase  95 ekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvailly 142
                     +++++++G+E++G+++e+l+lad+ + Ipm g+v+SLNv+vA a++ly
      CTQ30586.1 112 RPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILY 159
                     **********************************************98 PP

>> SpoU_methylas_C  SpoU, rRNA methylase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   2.0   9.7e-28   4.3e-24       1      54 []     163     218 ..     163     218 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 9.7e-28
  SpoU_methylas_C   1 RQRqaaGmYdrpr..LseeeyqrllFewgYPvlakvcrekglpYPaLdeeGeIlad 54 
                      RQRq+aGmY+r +  L+++e+qrllFe+gYPvla+v+r+kglpYP+++e+Ge++ad
       CTQ30586.1 163 RQRQNAGMYQRANsmLPPQEQQRLLFEGGYPVLARVARQKGLPYPHVNEQGEVEAD 218
                      9**********9999**************************************986 PP

>> RuvC  Crossover junction endodeoxyribonuclease RuvC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.3e-05       0.1      47      90 ..       7      51 ..       3      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
                HHHHHHHHHH--S.EEEEEE-S----HHHHHHHHHHHHHHHHHHH CS
        RuvC 47 daveelldayepd.alaieqvffaknvdsvlklaqarGvvilaal 90
                + + e+l + +pd ++++eqv+  +nv++v+++a a Gv  + a+
  CTQ30586.1  7 ERICEMLARRQPDlTVCMEQVHKPHNVSAVIRTADAVGVHEVHAV 51
                567788999999945899*********************999876 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.5   0.00025       1.1      46      80 ..      48      82 ..      24     108 .. 0.78
   2 ?    3.9   0.1     0.011        47      53      88 ..     143     178 ..     109     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00025
     SLATT_1 46 afgelsvdlvgvlaavaaallaWlelkqyeelaaa 80
                +  +++ + + ++a++aa   +W+++k +++ a a
  CTQ30586.1 48 VHAVWPSSRMRTMASAAAGSNSWVQVKTHRTIADA 82
                3456777788999*****************99876 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.011
     SLATT_1  53 dlvgvlaavaaallaWlelkqyeelaaaYslaaeeL 88 
                  +v+ l + +a+ l   e+++ ++ a  Y++a + L
  CTQ30586.1 143 GMVQSLNVSVASALILYEAQRQRQNAGMYQRANSML 178
                 567788888999999999*************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1731.13
//
Query:       CTQ30587.1  [L=704]
Description: ATP-dependent DNA helicase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-23   80.8   0.0    1.2e-22   80.2   0.0    1.3  1  RecG_wedge       RecG wedge domain
    6.2e-20   71.7   0.3    2.6e-19   69.7   0.1    2.1  2  DEAD             DEAD/DEAH box helicase
    1.5e-19   70.4   0.0    9.8e-17   61.3   0.0    2.4  2  Helicase_C       Helicase conserved C-terminal domain
    1.7e-11   44.4   0.0    2.7e-11   43.8   0.0    1.3  1  ResIII           Type III restriction enzyme, res subunit
    2.8e-08   33.6   0.0    5.9e-08   32.6   0.0    1.5  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    4.9e-07   29.3   0.0    9.7e-07   28.4   0.0    1.5  1  SecA_DEAD        SecA DEAD-like domain
    5.6e-05   22.9   1.0    0.00021   21.1   1.0    1.8  1  AAA_30           AAA domain
     0.0016   17.2   0.0     0.0022   16.8   0.0    1.2  1  SNF2_N           SNF2 family N-terminal domain
      0.006   15.9   0.1     0.0087   15.3   0.1    1.2  1  DUF2075          Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
      0.023   14.5   0.1      0.054   13.3   0.1    1.6  1  Helicase_RecD    Helicase
      0.068   13.3   0.0       0.98    9.5   0.0    2.2  2  RC-P840_PscD     Photosystem P840 reaction centre protein Psc
       0.14   12.4   0.7        5.2    7.3   0.2    3.3  2  AAA_22           AAA domain


Domain annotation for each model (and alignments):
>> RecG_wedge  RecG wedge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   8.3e-26   1.2e-22       5     161 ..      25     182 ..      21     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 8.3e-26
  RecG_wedge   5 akgvGekrekiLkklgietiedllyyfPrdyedrrkivpiseikedekvtvkgklvnvekkkissltiisavlsdgisqvlLkWfnqey.ikkklktlk 102
                 + gvG +++ +L+k+g++t++dll ++P  yedr ++ pi e+  +   tv+g++ n +++  ++ ++++  +sdg++ + +++fn +  +k+ l   +
  CTQ30587.1  25 LTGVGAAQSSKLAKIGLHTVQDLLLHLPLRYEDRTHLYPIAELLPGVYATVEGEVLN-SNITFGGRRMMTCQISDGTGILTMRFFNFNAaMKNSLA--T 120
                 579*****************************************************9.57899999********************8752677888..9 PP

  RecG_wedge 103 ekevlvtGlvkkgefGaleiknPeieeitgeqere....ilPvysLtegisqkelrkivkeni 161
                 +++vl++G +k+g++Ga e+  Pe   + + ++ e    + Pvy+ tegi+q +lrk+  + +
  CTQ30587.1 121 GRRVLAYGEAKRGKYGA-EMIHPEYRVQGDMSTPElqetLTPVYPTTEGIKQATLRKLTDQAL 182
                 ****************7.77789987655444333336689****************998876 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.1   1.7e-22   2.6e-19      18     171 ..     304     444 ..     281     449 .. 0.82
   2 ?   -1.0   0.0      0.87   1.3e+03     130     154 ..     660     684 ..     659     691 .. 0.80

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.7e-22
                 EEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET...TSSHHHHHHHHHTT.CSEEEEEHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
        DEAD  18 lvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig...gvaardqlskldng.vdivvgtpgrlddll 112
                 lv++++GsGKTl++++++l+++      +g+++ +++Pt+ Laeq++nn+++++++++++v ++ g   g+a++ q++++ +g v+++vgt+  +++ +
  CTQ30587.1 304 LVQGDVGSGKTLVAALAALRAI-----VHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGkqkGKARQAQQEAIASGeVQMIVGTHAIFQEQV 397
                 69*****************999.....5699*************************99999877666669999*******8778********9998855 PP

                 HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
        DEAD 113 stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.k 171
                 +     ++ + ++++DE +r+   ++   +++  +q        +     ++++AT+  +
  CTQ30587.1 398 Q-----FNGLALVIIDEQHRFGVHQRLALWEKGQQQG-----FHPH---QLIMTATPIpR 444
                 4.....*****************99999999965555.....2233...48888888755 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.87
                 HHHHHHTTTHHHHHHHHHHSHHHCT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 130 adrlldqgfsdfinrilnqlpqitc 154
                 ad l dq + ++++ri++++++ + 
  CTQ30587.1 660 ADLLRDQAMIPDVQRIARHIHERYP 684
                 7999****************65443 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0068        10      12      89 ..     324     406 ..     314     416 .. 0.73
   2 !   61.3   0.0   6.5e-20   9.8e-17      13     110 ..     491     599 ..     480     600 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0068
                 HTTTTSEEEEEESSHHHHHH.HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGG.TSSSTSTTESEEE CS
  Helicase_C  12 leeeggkilifvntidrlek.vklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdva.erGidipkvnlVi 89 
                   ++g+++ ++++t   +e+ ++ +++ +   gi+v  l g+ + + r++  e+  +ge+++++ t ++ ++ + ++++ lVi
  CTQ30587.1 324 AIVHGKQVALMAPTELLAEQhANNFRNWFeplGIEVGWLAGKQKGKARQAQQEAIASGEVQMIVGTHAIfQEQVQFNGLALVI 406
                 44577777777777776655545553333667*****************************9999976415555555555555 PP

  == domain 2  score: 61.3 bits;  conditional E-value: 6.5e-20
                 TTTTSEEEEEESSHHHHHH.........HHHHHHHT.......TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C  13 eeeggkilifvntidrlek.........vklllekk.......gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlpr 95 
                 ++eg++++ +++ i++ +                 +       ++++  +hg+++  e+++++++f++ge ++L+at+v+e G+d+p+ +l+i+ ++ r
  CTQ30587.1 491 THEGRQAYWVCTLIEESDLleaqaaeatW------EelklalpELNIGLVHGRMKPAEKQAVMQAFKQGEMHLLVATTVIEVGVDVPNSSLMIIENPER 583
                 68899999999999966433333332221......023355679******************************************************6 PP

                 S.HHHHHHHHTTSSST CS
  Helicase_C  96 n.vtsyiqriGRtgRa 110
                   +++++q +GR+gR+
  CTQ30587.1 584 LgLAQLHQLRGRVGRG 599
                 55*************7 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   1.8e-14   2.7e-11      28     169 ..     304     441 ..     278     443 .. 0.79

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.8e-14
                 EEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH........ CS
      ResIII  28 likmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseeeeeese 126
                 l++   G+GKTlvaa ++ r   +gk  ++ +++p++ l eq  ++f++++++   e+g  + g++k + ++++++  i   ++q++          +e
  CTQ30587.1 304 LVQGDVGSGKTLVAALAALRAIVHGK--QVALMAPTELLAEQHANNFRNWFEPLGIEVG-WLAGKQKGK-ARQAQQEAIASGEVQMIVGTH---AIFQE 395
                 677889********999999999766..9***********************9864422.233333333.577889999999999999988...78899 PP

                 HHHTTT-SEEEEETGGGTTS.T...TTHHHHHT---SEEEEEESS- CS
      ResIII 127 ellrdrfdviiiDEaHrlgakk...swreilekfkeavllglTATp 169
                 + + +   ++iiDE Hr+g  +    w++  ++  +  +l +TATp
  CTQ30587.1 396 QVQFNGLALVIIDEQHRFGVHQrlaLWEKGQQQGFHPHQLIMTATP 441
                 99999999***********9734447888666666699*******9 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   3.9e-11   5.9e-08       2      74 ..      74     145 ..      73     147 .. 0.96

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 3.9e-11
                      EEEEEEEEEE.EEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEEE CS
  tRNA_anti-codon   2 tvaGrvtsis.drsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrvtGrvkrrpggelelkveeie 74 
                      tv+G+v +   + +g+++++ ++ Dgtg+++  +f+    +++++l  G  v ++G+ kr + g  e++++e++
       CTQ30587.1  74 TVEGEVLNSNiTFGGRRMMTCQISDGTGILTMRFFN-FNAAMKNSLATGRRVLAYGEAKRGKYG-AEMIHPEYR 145
                      89**********************************.***************************.****99986 PP

>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   6.5e-10   9.7e-07      98     164 ..     308     374 ..     296     409 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 6.5e-10
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD  98 kTGEGKtlvatlpaylnaltgkgvhvvtvndYLakrdaewmgpvyeflGlsvgvieseleseerrea 164
                   G GKtlva+l+a+ + ++gk+v +++  + La++ a+++++ +e lG++vg++  +++ ++r+++
  CTQ30587.1 308 DVGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKGKARQAQ 374
                 5799***************************************************999988888875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   1.0   1.4e-07   0.00021      20     114 ..     302     427 ..     293     432 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.4e-07
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa............................eelgieastiakllkrlk...grarle 87 
                 + +++G  G+GKt + + ++  +  +g++v+++Apt+  A++ a                            ++  i++  ++ ++ +++   ++++++
  CTQ30587.1 302 MRLVQGDVGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHAnnfrnwfeplgievgwlagkqkgkarqaQQEAIASGEVQMIVGTHAifqEQVQFN 400
                 789**********876555544445599*************9886777777777766666666666655555466788888888888888**9888999 PP

      AAA_30  88 pgtllivDEagmvdtkqlaallkaaek 114
                    l+i+DE    + +q  al ++ ++
  CTQ30587.1 401 GLALVIIDEQHRFGVHQRLALWEKGQQ 427
                 99********99999999988877665 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.4e-06    0.0022     101     220 ..     333     446 ..     122     454 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.4e-06
                 EE--H.HHHHHHHHHHHHH-TTS-EEE--SSHHHH--------------..---EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHH CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 101 ivvPa.slldqWeneierhvsssalrvlvyggqkkmkkkntkvapklla..dydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstska 196
                 + +P+  l++q  n+++++ ++  ++v    g++k   k ++ +++  a  + + ++ t  + +         ++++      v++DE h+++ +++ a
  CTQ30587.1 333 LMAPTeLLAEQHANNFRNWFEPLGIEVGWLAGKQK--GKARQAQQEAIAsgEVQMIVGTHAIFQ---------EQVQFNGLALVIIDEQHRFGVHQRLA 420
                 67899778899****************99999874..444455555555005555666666666.........4567777899************6544 PP

                 .HHHHHH--.-S-EEEE-S--SSS-H CS
                 .xxxxxxxx.xxxxxxxxxxxxxxxx RF
      SNF2_N 197 .aeavskLs.tsnrwiltGTPiqnsl 220
                   e  ++     +++i+t+TPi++ l
  CTQ30587.1 421 lWEKGQQQGfHPHQLIMTATPIPRTL 446
                 134444433489***********976 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   5.8e-06    0.0087       4     102 ..     303     415 ..     300     438 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.8e-06
     DUF2075   4 vlVtGvaGtGKtvvllnllael................eddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkee 86 
                  lV+G+ G+GKt+v+  ++ ++                 ++  ++ ++ +   + +v  l  + ++k+++ + ++ +++  ++i  ++     +e+ + 
  CTQ30587.1 303 RLVQGDVGSGKTLVAALAALRAivhgkqvalmaptellAEQHANNFRNWFEPLGIEVGWLAGKQKGKARQAQQEAIASGEVQMIVGTH--AIFQEQVQF 399
                 69************99888888577766666666666655556666666666666666777666666666666677777777777777..666777889 PP

     DUF2075  87 pkedvvivDEAhrllt 102
                 + + +vi+DE hr   
  CTQ30587.1 400 NGLALVIIDEQHRFGV 415
                 99***********866 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   3.6e-05     0.054       2      98 ..     305     409 ..     304     426 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.6e-05
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglke.....eekkkkaekaelrvrkqrieyiapdellklkeqa. 91 
                    +++d G GK+ +++la+ ++i +gk ++ + ap++  +++  + +++ +e lg++      ++k k ++ ++ ++ + +++ i  ++++ +++ + 
     CTQ30587.1 305 VQGDVGSGKTLVAALAALRAIVHGK-QVALMAPTELLAEQHANNFRNWFEPLGIEVgwlagKQKGKARQAQQEAIASGEVQMIVGTHAIFQEQVQf 399
                    67899******************98.9***************************999998755555555555556688888888777777664336 PP

  Helicase_RecD  92 ...dllvvDE 98 
                        l+++DE
     CTQ30587.1 400 nglALVIIDE 409
                    6668899999 PP

>> RC-P840_PscD  Photosystem P840 reaction centre protein PscD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.27   4.1e+02      41      82 ..     349     390 ..     344     417 .. 0.76
   2 ?    9.5   0.0   0.00065      0.98      49      93 ..     529     573 ..     520     586 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.27
  RC-P840_PscD  41 rdrsgklqleispasgrrklsptkeliekliegeielfvltt 82 
                   r+ ++ l +e+   +g++k  + +   e +++ge++++v t 
    CTQ30587.1 349 RNWFEPLGIEVGWLAGKQKGKARQAQQEAIASGEVQMIVGTH 390
                   566677899999999*********************998664 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00065
  RC-P840_PscD  49 leispasgrrklsptkeliekliegeielfvlttqpdiaidlkkk 93 
                   l+i    gr k +  + +++  ++ge++l+v tt  ++++d+++ 
    CTQ30587.1 529 LNIGLVHGRMKPAEKQAVMQAFKQGEMHLLVATTVIEVGVDVPNS 573
                   56777889*********************************9865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.2    0.0035       5.2       9     103 ..     304     413 ..     300     442 .. 0.57
   2 ?    0.7   0.0      0.38   5.7e+02      75     113 ..     479     523 ..     449     601 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0035
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka......erlsseellealeqalrarav.........i 92 
                 +v G +G+GKT++++  + ++  + k+    +++ +   ++ ++ ++ ++ l  ++g  + +      + +++      ++  + ++a           
  CTQ30587.1 304 LVQGDVGSGKTLVAALAALRAIVHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKqkgkarQAQQEAIASGEVQMIVGTHAIfqeqvqfngL 402
                 6789**********9999988554333222222233444444455555555555555433333444321222222223333333333336666666666 PP

      AAA_22  93 elliiDEaqhl 103
                 +l+iiDE +++
  CTQ30587.1 403 ALVIIDEQHRF 413
                 77777777776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.38
      AAA_22  75 seellealeqalrarav...ielliiDEaqhlr.s..eealeeLr 113
                 ++++++++++a+ + ++    ++ +i+E + l  +  e+ +eeL+
  CTQ30587.1 479 RSDIIDRVRNACTHEGRqayWVCTLIEESDLLEaQaaEATWEELK 523
                 555556666666666666666777788888875424466666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4915.49
//
Query:       CTQ30588.1  [L=336]
Description: fructose 1,6-bisphosphatase II [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.1e-133  444.9   7.5   1.2e-133  444.7   7.5    1.0  1  FBPase_glpX  Bacterial fructose-1,6-bisphosphatase, glpX-enco
  ------ inclusion threshold ------
      0.043   13.8   0.0         11    6.1   0.0    2.3  2  DUF4265      Domain of unknown function (DUF4265)


Domain annotation for each model (and alignments):
>> FBPase_glpX  Bacterial fructose-1,6-bisphosphatase, glpX-encoded
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  444.7   7.5  1.4e-137  1.2e-133       1     308 []       3     322 ..       3     322 .. 0.99

  Alignments for each domain:
  == domain 1  score: 444.7 bits;  conditional E-value: 1.4e-137
  FBPase_glpX   1 rnlalelvrvteaAAlaaarlvGrgdkeaadqaAveamrkalneleikgevviGegekdeapmLyiGekvGsgegpevdiavdpleGttlvAkglpna 98 
                  r+la+e+ rvteaAAla ++++Grgdk++ad aAv+amr +ln ++i+g++viGege+deapmLyiGekvG+g+g +vdiavdp+eGt+++A+g++na
   CTQ30588.1   3 RELAIEFSRVTEAAALAGYKWLGRGDKNTADGAAVNAMRIMLNLVNIDGTIVIGEGEIDEAPMLYIGEKVGTGKGDAVDIAVDPIEGTRMTAMGQANA 100
                  689*********************************************************************************************** PP

  FBPase_glpX  99 isviAvaekgsllkapdvYmeKlvvgpeakgvidldapveenlkavakalgkevedltvvvLdrpRheelieeireagarvklisdGDvaaaiaaale 196
                  ++v+Av++kg++l+apd+YmeKl+vgp akg+idl+ p+eenl+++a+al+k++ +ltv+vL +pRh+++i++++++g+rv +i+dGDvaa+i ++++
   CTQ30588.1 101 LAVMAVGDKGCFLNAPDMYMEKLIVGPGAKGAIDLNLPLEENLHNIARALNKPLGELTVTVLAKPRHDAVIAQLQQLGVRVFAIPDGDVAASILTCMP 198
                  ************************************************************************************************** PP

  FBPase_glpX 197 esgvdvllGiGgapEGvlaAaalkclgGemqarlvpr.............keeereraekmgiedldkvltledLvkgddvifaatgvTdgelLkgvr 281
                  +s+vdvl+GiGgapEGv++Aa++++l+G+mq+rl+ r              e+e +r+++mgi +  kvl+l++++++d+v+f+atg+T+g+lL+g++
   CTQ30588.1 199 DSEVDVLYGIGGAPEGVVSAAVIRALDGDMQGRLLARhhvkgdneenrriGENELARCKTMGI-EAGKVLRLDEMARSDNVVFSATGITKGDLLDGIT 295
                  ************************************9************99************.********************************** PP

  FBPase_glpX 282 fkgggarteslvmrsksgtvrfiesih 308
                  +kg+ a+te+l++r+ks+t+r+i+sih
   CTQ30588.1 296 RKGNMATTETLLIRGKSRTIRRIQSIH 322
                  *************************98 PP

>> DUF4265  Domain of unknown function (DUF4265)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0018        16      37      92 ..     142     193 ..     134     205 .. 0.81
   2 ?    6.1   0.0    0.0012        11      12      55 ..     272     316 ..     264     336 .] 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0018
     DUF4265  37 eerlafervvkesGnstirvlvdekaelgesevreeLealgceveglsakllavdv 92 
                 + ++  + + k+ G+ t+ vl+++ ++    +v+++L++lg++v ++ ++ +a ++
  CTQ30588.1 142 NLHNIARALNKPLGELTVTVLAKPRHD----AVIAQLQQLGVRVFAIPDGDVAASI 193
                 556666777888899999999999877....7**********99888887777666 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0012
     DUF4265  12 tyrldniPffakgvAlgDvvev.dedeerlafervvkesGnstir 55 
                  +r dn+ f a+g+++gD+     +++++ ++e++  ++  +tir
  CTQ30588.1 272 MARSDNVVFSATGITKGDLLDGiTRKGNMATTETLLIRGKSRTIR 316
                 56668999**************99999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2552.15
//
Query:       CTQ30589.1  [L=248]
Description: ferredoxin-NADP reductase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-18   66.9   0.0    2.9e-18   66.5   0.0    1.2  1  NAD_binding_1  Oxidoreductase NAD-binding domain
      7e-06   26.3   0.0    1.6e-05   25.2   0.0    1.6  1  FAD_binding_6  Oxidoreductase FAD-binding domain
  ------ inclusion threshold ------
      0.015   15.4   0.0       0.37   10.9   0.0    2.1  2  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   4.9e-22   2.9e-18       1     108 [.     111     222 ..     111     223 .. 0.93

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 4.9e-22
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH......HSS CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells......lkk 90 
                    m+a+Gt++ P++s+l++  +  ++ +++vlv+++r+ +dl y   ++el++++ g+l++++vvsre  +    +grv   +   +l+      ++ 
     CTQ30589.1 111 MLATGTALGPYLSILQEGKDL-ERFNNLVLVHAVRYAADLSYLPLMRELEQRYAGKLRIQTVVSRETVEG-SLTGRVPFLIETGALEeavglpMTT 204
                    9*******************8.888*************************************77776664.79****99998888888999**99* PP

                    TTEEEEEECSHHHHHHHH CS
  NAD_binding_1  91 eethvyvCGppgMikavr 108
                    +++hv++CG+p+M+++++
     CTQ30589.1 205 DTSHVMLCGNPQMVRDTQ 222
                    ***************997 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   2.7e-09   1.6e-05      17      88 ..      20      88 ..       8      97 .. 0.84

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2.7e-09
                   EEEEESTTTS-----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EE CS
  FAD_binding_6 17 frfklpsekqklglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtl 88
                   f++ + ++     + +Gq+  l l+i+ge+v R+Y+ ++++  +  le+   ++p+Gk+s  L  lk+gd +
     CTQ30589.1 20 FSLYVRAPV--HPFTAGQFTKLGLEIDGERVQRAYSYVNAP-GNPDLEFYLVTVPEGKLSPRLAALKPGDEV 88
                   444444444..4899*********************77776.5668999999*****************987 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.1e-05      0.37       1      82 [.     106     180 ..     106     197 .. 0.89
   2 ?    2.2   0.0     0.029   1.7e+02     138     153 ..     208     223 ..     202     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.1e-05
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTseyeaed 82 
                    ++++ ++a G+ + p++sil++    ++      +++ l+ +vr   +l+ +  ++ ele++    +++i++ +++e+ +++
     CTQ30589.1 106 CDTLWMLATGTALGPYLSILQEGKDLER-----FNNLVLVHAVRYAADLSYLP-LMRELEQRYAG-KLRIQTVVSRETVEGS 180
                    58899****************9777775.....99*****************9.99*99999888.9999999999988765 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.029
                    xxxxxxxxxxxxxxxx RF
  NAD_binding_6 138 gvfvCGppklvkevkk 153
                     v+ CG+p++v+++++
     CTQ30589.1 208 HVMLCGNPQMVRDTQQ 223
                    699********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2066.31
//
Query:       CTQ30590.1  [L=142]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-20   73.1   5.5    2.7e-20   72.7   5.5    1.2  1  DUF805        Protein of unknown function (DUF805)
  ------ inclusion threshold ------
      0.012   15.4   4.3      0.014   15.2   4.3    1.0  1  CTP_transf_1  Cytidylyltransferase family
       0.24   11.3   8.7       0.05   13.6   4.7    1.7  2  Trep_Strep    Hypothetical bacterial integral membrane protei


Domain annotation for each model (and alignments):
>> DUF805  Protein of unknown function (DUF805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   5.5   4.5e-24   2.7e-20       2     104 ..       8     132 ..       7     133 .. 0.71

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 4.5e-24
      DUF805   2 fdfkGRasRsefwwfvlfllllvivlallaavlaaaavasalsvvlallllvpslavtvRRlHDtgrsgwllllllv............p......... 79 
                 f++kGR++R++fw+++ + l+ + +l+ la       ++ +++ +++++ll p++av+v+RlHD+g+sg+++ll+++            p         
  CTQ30590.1   8 FSIKGRIGRRDFWIWIAIWLVTMSALFTLAGS---NLLNLQTAAFIIVCLLWPTAAVVVKRLHDRGKSGLWALLMVLawmllagnwamlPqvwqwgvgr 103
                 899**********8888877777775555554...57788888999999999*******************9988885555555554441333333333 PP

      DUF805  80 ....lialllllvllllpgtpgenryGpd 104
                     li++++l+ l +  gt+gen++G++
  CTQ30590.1 104 fvptLIIVMMLIDLGAFVGTQGENKFGKE 132
                 332233334455566666*********86 PP

>> CTP_transf_1  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   4.3   2.3e-06     0.014      51     153 ..      18     121 ..       2     133 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.3e-06
                   HHHHHH...HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHH---...HHHHHHHHHHHHHHHHHTHHHH..TTHHHHHHHHHHHHHHHHHHHHH. CS
  CTP_transf_1  51 krllllllslvlllllllflylesliallklvlllvlvllllvlkvlkskskklervilallallyvvlll.qslllienikeglllvllllalvv. 145
                      +++   +++++ +l++l++ +l +l ++++++v++l+ ++  v+k+   + ++ + all++l  +ll  + ++l + ++ g+  ++  l++v+ 
    CTQ30590.1  18 DFWIWI-AIWLVTMSALFTLAGSNLLNLQTAAFIIVCLLWPTAAVVVKRLHDRGKSGLWALLMVLAWMLLAgNWAMLPQVWQWGVGRFVPTLIIVMm 113
                   334444.7888888999999***********************9999888888888777777776666666578889999*******9987777651 PP

                   HHHHHHHH CS
  CTP_transf_1 146 aaDigaYf 153
                   + D ga++
    CTQ30590.1 114 LIDLGAFV 121
                   57999987 PP

>> Trep_Strep  Hypothetical bacterial integral membrane protein (Trep_Strep)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   4.7   8.3e-06      0.05       9      84 ..      21      96 ..      19     103 .. 0.87
   2 ?   -1.2   0.1      0.28   1.7e+03     156     171 ..     107     122 ..     101     131 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.3e-06
  Trep_Strep  9 iftalyfvvvfvvgmlglispvlmlllpaivallagivymllvakvpkfgailimglllgllllltGhgwlvllla 84
                i  a+++v + +   l+  + +++  +++i++ l+ +   ++v++ + +g   +++ll+ l ++l +  w +l+ +
  CTQ30590.1 21 IWIAIWLVTMSALFTLAGSNLLNLQTAAFIIVCLLWPTAAVVVKRLHDRGKSGLWALLMVLAWMLLAGNWAMLPQV 96
                66799999999998877777888999999999*****************************99976666*999865 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.28
  Trep_Strep 156 mlvvlliltivgallG 171
                 +l+++++l+ +ga++G
  CTQ30590.1 107 TLIIVMMLIDLGAFVG 122
                 3333333344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1170.57
//
Query:       CTQ30591.1  [L=200]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-81  271.9   0.1    2.6e-81  271.6   0.1    1.0  1  DUF1454   Protein of unknown function (DUF1454)
  ------ inclusion threshold ------
      0.016   14.7   0.1      0.026   13.9   0.1    1.4  1  HBM       Helical bimodular sensor domain


Domain annotation for each model (and alignments):
>> DUF1454  Protein of unknown function (DUF1454)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.6   0.1   2.9e-85   2.6e-81      16     190 .]      21     193 ..       6     193 .. 0.94

  Alignments for each domain:
  == domain 1  score: 271.6 bits;  conditional E-value: 2.9e-85
     DUF1454  16 aaepkvteetkeealyLlagaPtFdltisqfRekynkanptlpleEyrvidskddkanltRAAskineklYssavLErgtekikslqltllpseegpee 114
                 a +++ +e+t+++a+yLlagaP+Fd++isqfRek+n++np+lpl+E+r i+++ d+anltRAAskine+lY+s++LErgt kiks+q+t+lp ++gpe+
  CTQ30591.1  21 ALSAE-SESTTAAAPYLLAGAPSFDQSISQFREKFNADNPKLPLNEFRSIATSRDRANLTRAASKINENLYASTALERGTLKIKSMQITWLP-IQGPEQ 117
                 33333.456999********************************************************************************.****** PP

     DUF1454 115 kearakaleYmaAlirqfePtlskeqsqkkleellskgkkkryysqneGalRyvvadsgekgltFAvEPikLaLse 190
                 k+ar+kaleYm+A+ir f Pt+s++qsq+kl++ll++gk+kry++ +eGa+Ryvvad+gekgltFA+EPikLaLse
  CTQ30591.1 118 KAARTKALEYMSAMIRAFVPTFSQAQSQQKLQKLLAAGKGKRYFADTEGAVRYVVADHGEKGLTFAIEPIKLALSE 193
                 **************************************************************************96 PP

>> HBM  Helical bimodular sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   2.9e-06     0.026      20      79 ..      95     154 ..      67     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHH CS
         HBM  20 LndllkdLRiaRlqyelsngdataaavqkkldelkaqlqklkakfkspenvrlLqeqlal 79 
                 L   + ++   ++++   +g++++aa +k l+ ++a+  +   +f++++++++Lq+ la+
  CTQ30591.1  95 LERGTLKIKSMQITWLPIQGPEQKAARTKALEYMSAMIRAFVPTFSQAQSQQKLQKLLAA 154
                 555666777889999999*************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1544.69
//
Query:       CTQ30592.1  [L=255]
Description: triosephosphate isomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-94  314.7   0.3    4.1e-94  314.5   0.3    1.0  1  TIM       Triosephosphate isomerase
  ------ inclusion threshold ------
      0.089   13.0   0.0       0.17   12.1   0.0    1.5  1  DUF3254   Protein of unknown function (DUF3254)


Domain annotation for each model (and alignments):
>> TIM  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.5   0.3   4.5e-98   4.1e-94       2     243 .]       5     246 ..       4     246 .. 0.99

  Alignments for each domain:
  == domain 1  score: 314.5 bits;  conditional E-value: 4.5e-98
                 EEEEE-TBTS-HHHHHHHHHHHHHHCHG.CTSEEEEE--GGGHHHHHHHHTTSSECEEES--BSSSSBS-TT--BHHHHHHTT-SEEEES-HHHHHHST CS
         TIM   2 liagNwKmnktleeakellkklkaklke.ekvevviappflylekvkklleesklklgaqnvsaeksGafTGevsaemlkdlgvkyviiGHsErrqlfk 99 
                 l++gNwK+n++ ++++el+++l+++l   + + v+iapp +yl+ +k+++e+s+++lgaqnv+ + sGafTGe+saemlkd+g++y+iiGHsErr+++k
  CTQ30592.1   5 LVMGNWKLNGSRHMVNELVANLRTELAGvSGCAVAIAPPEMYLDLAKRAAEGSHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHK 103
                 79*******************999999989********************************************************************* PP

                 --HHHHHHHHHHHHHTT-EEEEEE---HHHHHTT.HHHHHHHHHHHHTTTS-CCCGGCEEEEE--GGGSSSS----HHHHHHHHHHHHHHHHHHSTHHH CS
         TIM 100 EtdelvakKvkaalksglkpilCvGEtleereagkteevvkeqlkeilkkldeealknvviAYePvWAiGtgktatpeqaqevhaairkelaekvskev 198
                 E+del+akK++ ++++gl+p+lC+GEt++e+eagkteev+++q++++lk+ +++a++ vviAYePvWAiGtgk+atp qaq+vh++ir+ +a+  ++++
  CTQ30592.1 104 ESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKA-DAKI 201
                 *******************************************************************************************988.9*** PP

                 HTTSEEEEESS--TTTHHHHHTSTT--EEEESGGGCSHHHHHHHH CS
         TIM 199 aekirilYGGsvnkenakellkqkdidGlLvGgaslkaesFlkii 243
                 ae+++i+YGGsvn+ na+el++q+didG+LvGgaslka+ F+ i+
  CTQ30592.1 202 AEQVIIQYGGSVNAGNAAELFTQPDIDGALVGGASLKADAFAVIV 246
                 *****************************************9885 PP

>> DUF3254  Protein of unknown function (DUF3254)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.9e-05      0.17      55      86 ..     168     199 ..     140     208 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.9e-05
     DUF3254  55 pgWttikGesrtrsrsgavekavrdFvqkAld 86 
                 p W+  +G+s t ++++av+k +rd + kA +
  CTQ30592.1 168 PVWAIGTGKSATPAQAQAVHKFIRDHIAKADA 199
                 89**************************9954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2038.49
//
Query:       CTQ30593.1  [L=434]
Description: Citrate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-22   80.4  24.4    1.9e-22   80.0  24.4    1.1  1  Na_sulph_symp  Sodium:sulfate symporter transmembrane region
    6.4e-16   58.4  29.5    1.1e-15   57.6  29.5    1.3  1  CitMHS         Citrate transporter


Domain annotation for each model (and alignments):
>> Na_sulph_symp  Sodium:sulfate symporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0  24.4   2.1e-26   1.9e-22      37     471 ..      16     433 ..      10     434 .] 0.87

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 2.1e-26
  Na_sulph_symp  37 fiaaivglileplplavialialsllavligvlaakalsevlsgfssdttlLvfaalliaaavektgLgkRiAlvlvkivGkrtliLgyalvladl 132
                    + ++iv + +  lp+ ++al+  +   ++ ++++    + +  gf s++ +Lvf+++++++a+ ktgL  R A  l   +  +  ++  ++vl+  
     CTQ30593.1  16 VGVTIVLWATSLLPEFITALLFFAAA-MMAKIAP---PEVIFGGFASSAFWLVFSGFVLGIAIRKTGLADRAAQALSARLTDSWPRMVASVVLLSY 107
                    5579*****************99999.5555555...488899****************************************999999******* PP

  Na_sulph_symp 133 llapatpsntAraggivfpvikslssafgsepekqserkigaylmltvvqsasitsiaflTamApNllllglinsilgveitwasWflaaipt.gv 227
                    +la ++psn  r +  + p++  ++   g    +   r     l l v  ++   s+ +l a  pNl+++g ++   g++++++ ++l   p+ g 
     CTQ30593.1 108 ALAFVMPSNMGRIALLM-PIVAAMARRAGIADGS---R-GWFGLALAVGFGTFQLSATILPANVPNLVMSGAAEGSYGIHLNYVPYLLLHTPVlGW 198
                    ************99877.****999988876555...3.3456999999*************************************9996654266 PP

  Na_sulph_symp 228 illllvplllyvlyppeikkkeeakavaktelkelGpltarekallilfvlllllWifgeslnidattvaivvlvillllr..vldWkDivkqkta 321
                    +   +   l+ +l+p++ +          ++l  l p+++ ek+l+ l+ ++l+lW++++  ++  + +++ + vi ll+r   ++ +    +   
     CTQ30593.1 199 LKGAVLVALICWLFPGKPHPP--------RDLTPLPPMSRDEKRLAWLLAVVLSLWVTESWHGVGPAWTGLAAAVITLLPRvgFINGE-EFASGVN 285
                    665555555559***988777........89**************************************************4446666.6777888 PP

  Na_sulph_symp 322 Wntllllgglialakllersgliewlgnklttsls..glspavaiiiilslfvlvhylfaSatAttaallpillavaqaipgappllvalllalat 415
                      t ++ +g+++la   +++g+   +gn+l + +   +  p   ++++  +  ++ + f   +  + al+  ++     ++g p+l v++  +l  
     CTQ30593.1 286 MRTCIYVAGILGLAIAVTQTGIGGAVGNALLQVMPldKDNPFTSFLALTGI--TSALNFIMTANGVPALYTTFAQSFADATGFPLLSVIMIQVLGY 379
                    99****************************999873244555555555555..555555555556899**99998766666**9999999999988 PP

  Na_sulph_symp 416 slagfllpyatgpnpivfgagylkvkdywrlGfilsiigllillllgalwwklLvl 471
                    s    llpy ++p +++ g g+++ +   +l + l+ +++lill l  +w +lL+ 
     CTQ30593.1 380 STP--LLPYQASPIVVAMGLGKVPARAGMQLCLALAAVSYLILLPLDYAWYQLLGK 433
                    877..********************************************9999975 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6  29.5   1.2e-19   1.1e-15       1     287 [.      20     366 ..      20     379 .. 0.70

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 1.2e-19
                 xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xx RF
      CitMHS   1 lvllileklrldvvallvlvll....vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvllvlltallsafvsn.dg 93 
                 +vl++++ l+  ++all  +++    +  +e+++ g+as++ +l++ ++++g a+ +tGl+dr a+ l  +   +   +++ +vll+  l+ ++    g
  CTQ30593.1  20 IVLWATSLLPEFITALLFFAAAmmakIAPPEVIFGGFASSAFWLVFSGFVLGIAIRKTGLADRAAQALSARLTDSWPrMVASVVLLSYALAFVMPSnMG 118
                 589999999999***998888789*9999999*************************************877776556777799999999888776477 PP

                 xxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................xxxxxx RF
      CitMHS  94 vvlimipivlslakrlkklppl.....lliplalaaniggaltpiGtpttraaarpglslpnlll............................lalllv 159
                  +++++piv ++a+r +    +     l+++++++    +a+++  ++            pnl++                             +++lv
  CTQ30593.1 119 RIALLMPIVAAMARRAGIADGSrgwfgLALAVGFGTFQLSATILPANV------------PNLVMsgaaegsygihlnyvpylllhtpvlgwlKGAVLV 205
                 7**************555555598765555555555444444444444............555554444444444444433333354333333222444 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 160 gllplvllfmfgvalalpvnapkvkkqkaiieaiarsllpv.................atillla...........ykkveWsvlllfaGvfllvgale 230
                 +l++ ++ +  + +  l++  p  ++ k++  ++a  +l+                  a++++l+              v+  + + +aG+++l+ a++
  CTQ30593.1 206 ALICWLFPGKPHPPRDLTPLPPMSRDEKRLAWLLAV-VLSLwvteswhgvgpawtglaAAVITLLprvgfingeefASGVNMRTCIYVAGILGLAIAVT 303
                 455555555445555555555555555544444444.22223555555555555555444444449********************************* PP

                 xxxxxxxxxxxx.xx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 231 qtGilealadll.ga.....ggplvalalvlgliallsafisnvavaalmapialgmapalgl 287
                 qtGi+ a++++l +      ++p++++++++g++++l +++  + v al +  a + a a+g+
  CTQ30593.1 304 QTGIGGAVGNALlQVmpldkDNPFTSFLALTGITSALNFIMTANGVPALYTTFAQSFADATGF 366
                 ***8888887774447776549************************88888888888887663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3174.56
//
Query:       CTQ30594.1  [L=254]
Description: CDP-diacylglycerol phosphotidylhydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-92  306.9   0.0    9.3e-92  306.7   0.0    1.0  1  CDH       CDP-diacylglycerol pyrophosphatase


Domain annotation for each model (and alignments):
>> CDH  CDP-diacylglycerol pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.7   0.0   5.2e-96   9.3e-92       1     223 [.      31     249 ..      31     250 .. 0.99

  Alignments for each domain:
  == domain 1  score: 306.7 bits;  conditional E-value: 5.2e-96
         CDH   1 rdaLWkivseqCvpaqqakgepapCaevdlakgyavlkdrngplqyLliPtarisGiespallepetpnyfaaAwaarklvseklgkalpdealsLaiN 99 
                 +daL+kiv +qCvp+qq++++p+pCaev+l+ gy+++kdrngplqyLl+Pt ri+G esp llep tpn+f++Aw+ r+++s+++g+++pd+a+sLaiN
  CTQ30594.1  31 PDALRKIVLQQCVPHQQQQQNPSPCAEVNLKGGYVLFKDRNGPLQYLLMPTYRINGTESPLLLEPLTPNFFWQAWQGREIMSQRHGAPVPDNAVSLAIN 129
                 69************************************************************************************************* PP

         CDH 100 sasgRsQdqLhiHidClrpdvraaLkkaaakigekWkslpekLegheylarrveaeelaqknpfrllaeelpeareemaeaslalvgasekdgkkgfvl 198
                 s+sgR+Q+++hiHi+Clrpdvra+L+k aa+i+++W +lp  L+gheylarrv+++elaq++pf +laee+peare+m++ +la+  a+++dg+  +vl
  CTQ30594.1 130 SRSGRTQNHFHIHISCLRPDVRAQLDKDAAAISSRWLPLPGGLQGHEYLARRVTEAELAQRSPFLMLAEEVPEAREHMGRFALAM--AQQSDGS--LVL 224
                 *************************************************************************************..9999988..*** PP

         CDH 199 LaseadllkgnrasaeelqDheCki 223
                 La+e++ll+ nrasaee+qDh+C+i
  CTQ30594.1 225 LATERNLLTLNRASAEEIQDHRCAI 249
                 ***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1959.69
//
Query:       CTQ30595.1  [L=329]
Description: sulfate transporter subunit; periplasmic-binding component of ABC superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-47  161.0   0.1    4.4e-47  160.8   0.1    1.1  1  SBP_bac_11  Bacterial extracellular solute-binding protein
    6.5e-19   69.0   2.6    8.1e-19   68.7   2.6    1.1  1  SBP_bac_1   Bacterial extracellular solute-binding protein
    7.5e-12   45.2   0.9    2.1e-11   43.7   0.5    1.6  2  SBP_bac_6   Bacterial extracellular solute-binding protein
    2.8e-08   33.9   0.7    4.5e-08   33.3   0.7    1.4  1  SBP_bac_8   Bacterial extracellular solute-binding protein
    0.00027   20.1   0.0    0.00044   19.4   0.0    1.5  1  PBP_like    PBP superfamily domain


Domain annotation for each model (and alignments):
>> SBP_bac_11  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   0.1   1.2e-50   4.4e-47       8     230 .]      31     280 ..      24     280 .. 0.87

  Alignments for each domain:
  == domain 1  score: 160.8 bits;  conditional E-value: 1.2e-50
                 STHHHHHHHHHHHHHH....H-..--EEEEESSHHHHHHHHHHH..-SEEEESSH.HHHHHHHHGGGGG......GG-EEEEEEEEEEEESTT-TT--- CS
  SBP_bac_11   8 slaaalrelaaaFeah....tg..vkvevsaggsgklarqiadgarpDvwipassawlellaaaglvqa......esavplassplviavpkgnpkkik 94 
                  +++ +++ ++aF+ah    tg  v ++ s+ggsgk+a ++++g ++Dv+ +a +  ++++a++g++++      +++++ ++s++v++v+kgnpk+i+
  CTQ30595.1  31 PTRELYEQYNKAFSAHwkqeTGdnVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKnwlkrlPDNSAPYTSTIVFLVRKGNPKQIH 129
                 447777888888877532236698999************************************************9999******************** PP

                 SHHHHHHSS--EEEE--T-TTTTH....H.HHHHG..GG--......HHHHHHHHHTEEEEESSH.HHHHHHHHTTT-SEEEEEHHHHH....H.STTS CS
  SBP_bac_11  95 gwadLlkpglklavadPttspsGl....aalalle..aaga......qellkalekkvvklgess.rqlltaveageadagivyeseakaa..e.ngdk 177
                 +w+dL+kpg+++++++P++s++++    aa++++   +         qe++kal+k+v +l  ++ +++ t+ve+g  d++i++e+ea++a  e  +dk
  CTQ30595.1 130 DWNDLIKPGVSVITPNPKSSGGARwnylAAWGYALhqN--HgdqakaQEFVKALYKNVEVLDSGArGSTNTFVERGIGDVLIAWENEALLAtnElGKDK 226
                 *****************999999986664554444332..13466779***********9998884556777****************7665555889* PP

                 SEEEE--TTT--....EEEEEEEE-TT--HHHHHHHHHTTSHHHHHHHHHTT-B CS
  SBP_bac_11 178 leavylpeglnl.dpldypaavlkkaakreaAraFlafLrspeaqailrkyGfr 230
                 +e+v+++e++++ +++ ++  v++k + r+ A+a+l++L+spe+q+i++k+ +r
  CTQ30595.1 227 FEIVTPSESILAePTVSVVDKVVDKKGTRQVAEAYLKYLYSPEGQEIAAKNFYR 280
                 ***************************************************998 PP

>> SBP_bac_1  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   2.6   2.2e-22   8.1e-19       4     315 .]      32     272 ..      29     272 .. 0.88

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 2.2e-22
                 HHH.HHHHHHHHHHHHHHHHTTEEEEEEEECHHHHHHHHHHHHHTTSSSCSEEEECGGHHHHHHHTTSBECCHHHHHHTTECTTCCTEEEEHHHHTHHH CS
   SBP_bac_1   4 lte.gaalqalvakafekehpgikVeiesvgsgslaqkltlaiaaGdgpaDviavdndwiarlakaglllpldpyvkaylapgvkdaadklsssvlpki 101
                 ++e ++ +++++ + +++ ++g +V+i ++ +gs++q  ++ + +G  +aDv++            +l+ ++d++++   +++++   ++++s      
  CTQ30595.1  32 TRElYEQYNKAFSAHWKQ-ETGDNVVIRQSHGGSGKQ--ATSVINGI-EADVVTL-----------ALAYDVDAIAERGRIDKNWLKRLPDNS------ 109
                 667788999***888977.9*****************..********.77*****...........*******************99999888...... PP

                 HCEEEESEEEEEEEEEEE...ETTTHHCTTGGGSHBHHHHHHHHHHHHHHCTCTHCCHCCEEHHHHHHHHHHHHHHHHTGGGEECCCTHHCSHHHHSHH CS
   SBP_bac_1 102 ldskvlyvPlyaargliY...NkdlfekagldppwtWdelveaakklkekgkkpiggarggsasgtayyfalalakslggkvfdkdgggldnpegvtaa 197
                         P+ ++ ++ +   N++  +         W++l+++++ ++ +++k +ggar+ + + ++y++ ++                          
  CTQ30595.1 110 -------APYTSTIVFLVrkgNPKQIH--------DWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHQNHG------------------------ 169
                 .......57777888888677777777........9******************999999999999999874333........................ PP

                 HHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHH.TTSCSEEEEEHHHHHHHHCEEEEECHHCHHHHTTSTEEEECEEBETTTTSEEEEEEE.EEEBTT CS
   SBP_bac_1 198 tylvklyavanltkelkgkgaenkdgaaalalfe.aGeaamaivglwaalaamkvapkvafaadkekpkeelgvaplPagkggkpgilgayg.laipkg 294
                      ++a++++++ +k++ +++++ +  ++ f  +G  +++i++ ++al a ++ +k +f++ +++  +                   a + + ++ +
  CTQ30595.1 170 ---DQAKAQEFVKALYKNVEVLDSGARGSTNTFVeRGIGDVLIAWENEALLATNELGKDKFEIVTPSESI------------------LAEPtVSVVDK 247
                 ...444466677778899999999999999998889********************************99..................77877999999 PP

                 CSTHHH....HHHHHHHHTSHHHHH CS
   SBP_bac_1 295 sknpea....AkkFldfllspeaqa 315
                   ++++    A+++l++l+spe+q+
  CTQ30595.1 248 VVDKKGtrqvAEAYLKYLYSPEGQE 272
                 9999999999*************96 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.027        96     132     198 ..      64     133 ..      35     135 .. 0.71
   2 !   43.7   0.5     6e-15   2.1e-11      59     234 ..     116     300 ..     109     306 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.027
   SBP_bac_6 132 mvkaagslesge..pavsvvpyffadilpekkkgk..nlkvvwPedGalvspifmlvkkgkkkelakafid 198
                 + k+a+s++ g    +v+++ +++ d+++e+ + +   lk + +++  ++s+i+ lv+kg ++++  ++ d
  CTQ30595.1  64 SGKQATSVINGIeaDVVTLALAYDVDAIAERGRIDknWLKRLPDNSAPYTSTIVFLVRKG-NPKQIHDWND 133
                 555666666665556799999999999999987667334445555599999999999999.8888877765 PP

  == domain 2  score: 43.7 bits;  conditional E-value: 6e-15
   SBP_bac_6  59 lvlavnkdrlkgrpvPksWaDLldPeykgkvalpgnng.....sdlfealllalykdfg.edgvkkllrnlkanlhpaq.mvkaagslesgepavsvvp 150
                 +v++v k   k+     +W+DL++P    +v  p+++       ++ +a + al++++g ++++++++++l +n+     + +  ++   +++  +v++
  CTQ30595.1 116 IVFLVRKGNPKQI---HDWNDLIKPGV--SVITPNPKSsggarWNYLAAWGYALHQNHGdQAKAQEFVKALYKNVEVLDsGARGSTNTFVERGIGDVLI 209
                 5555555555444...89*******87..9999999999985555666667788889**9****************99995555555555556777777 PP

   SBP_bac_6 151 yffadilpekkkgk..nlkvvwPedGalvspifmlvkkg....kkkelakafidfllspevqailakaggvfPvv..tnpavlnelpegakl 234
                 ++ + +l + ++ +  ++++v+P +  l+ p++ +v k      ++  a+a++ +l+spe+q+i ak+++  P +  ++++ +ne+p+ + +
  CTQ30595.1 210 AWENEALLATNELGkdKFEIVTPSESILAEPTVSVVDKVvdkkGTRQVAEAYLKYLYSPEGQEIAAKNFY-RPRDpnVAKKYANEFPKLKLF 300
                 7777777666654457********************999887778999*********************9.897666666677777654444 PP

>> SBP_bac_8  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.7   1.2e-11   4.5e-08      86     264 ..     109     282 ..      27     301 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.2e-11
                 --EEEEEEE-EEEEEHHHHHHS.---BHHHHHHHHHHHHHH-.SEGG--.-GGGGGGTHHETTEE---H..HHH.HHHHHHHHHHHHTT-EE-S....- CS
   SBP_bac_8  86 gvPyasetpyvliynkdllekaedpktwdellaaakklkgkf.glpdpa.sgwlqaallakdgksldddggkdglkealellkklkdngktydtg..ad 180
                 + Py+ +t  v+ ++k   +   ++ +w +l +     +g   ++p+p  sg +++  la++g+ l ++    ++++a e++k l++n+ ++d+g   +
  CTQ30595.1 109 SAPYT-ST-IVFLVRKGNPK---QIHDWNDLIK-----PGVSvITPNPKsSGGARWNYLAAWGYALHQN--HGDQAKAQEFVKALYKNVEVLDSGarGS 195
                 56666.44.67777777655...7999999999.....5555255787625788998666699999998..6778*****************7763369 PP

                 -SSTTTTTSBSEEEE-TTHHHHHH-T.TT.SEEEE--S--EEEEEEEEEE...BTTS-HHHHHHHHHHHHHTTSHHHHHHHHHH---BS CS
   SBP_bac_8 181 avsefanGevaftingswdiaaaqka.gk.klgaivpkqgsfaggkglav...pknaknedlaAldFlkwltspenqaalaektgyipv 264
                 ++  +  G     i+++ ++  a+++ gk k++++ p ++ +a  +  +v     +++ ++  A + lk+l+spe+q+  a+   y p 
  CTQ30595.1 196 TNTFVERGIGDVLIAWENEALLATNElGKdKFEIVTPSESILAEPTVSVVdkvVDKKGTRQ-VAEAYLKYLYSPEGQEIAAK-NFYRPR 282
                 999999******************8888659**************9988844244555555.6***************9888.555554 PP

>> PBP_like  PBP superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-07   0.00044      70     178 ..     115     234 ..      54     247 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.2e-07
                 CHCCCCHCCHHHS--BGGGC-S-B-EEEEE-TTS..HHH.HHHH...HHHC-CEECTE-SSTTSEEESSHHHH.........HCCHCCETTCCECCCGG CS
    PBP_like  70 eqglvvakgnpkkitnwkdladaplrlvnRetGS..Gtr.dlfd...ellkkegiskssikgyaqearshlav.........aaaVaagradvgvgiea 153
                  + ++v+kgnpk+i++w+dl ++++ +++++  S  G+r  ++    ++l++++ ++++ ++  +  +++++v          + V++g +dv ++ e+
  CTQ30595.1 115 TIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSsgGARwNYLAawgYALHQNHGDQAKAQEFVKALYKNVEVldsgargstNTFVERGIGDVLIAWEN 213
                 56689***********************99865522333223331113455556666666666666666666666666666667777777777777666 PP

                 -HCCCCCCECTTCE-EEEEEEEECT CS
    PBP_like 154 vaeelkgldfvplaeerydlvvrke 178
                  a  l  l  ++l + ++++v++ e
  CTQ30595.1 214 EA--L--LATNELGKDKFEIVTPSE 234
                 66..4..566666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2543.29
//
Query:       CTQ30596.1  [L=79]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-26   90.5  16.9      1e-25   90.0  16.9    1.2  1  ZapB            Cell division protein ZapB
    0.00012   22.2  13.4    0.00015   21.8  13.4    1.1  1  DHR10           Designed helical repeat protein 10 domain
    0.00078   19.1   7.4    0.00086   18.9   7.4    1.0  1  PspA_IM30       PspA/IM30 family
     0.0015   18.7  10.8     0.0018   18.4  10.8    1.1  1  UPF0242         Uncharacterised protein family (UPF0242) N-te
     0.0015   17.8  10.6     0.0018   17.7  10.6    1.0  1  DUF3450         Protein of unknown function (DUF3450)
     0.0024   17.9  11.3      0.016   15.3   3.5    2.0  2  CtIP_N          Tumour-suppressor protein CtIP N-terminal dom
     0.0027   17.3   6.2     0.0033   17.0   6.2    1.2  1  Leu_zip         Leucine zipper
     0.0033   18.0   7.8     0.0043   17.7   7.8    1.2  1  YabA            Initiation control protein YabA
     0.0061   15.9   8.8     0.0064   15.8   8.8    1.0  1  HemX            HemX, putative uroporphyrinogen-III C-methylt
     0.0085   14.7   4.7     0.0092   14.6   4.7    1.0  1  Herpes_UL6      Herpesvirus UL6 like
  ------ inclusion threshold ------
      0.012   16.0   9.4      0.013   15.9   9.4    1.1  1  Uso1_p115_C     Uso1 / p115 like vesicle tethering protein, C
      0.012   15.6  10.4      0.014   15.4  10.4    1.2  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.012   15.6   7.4      0.017   15.2   6.6    1.7  1  Cep57_CLD_2     Centrosome localisation domain of PPC89
      0.013   15.3  12.5      0.013   15.3  12.5    1.0  1  KASH_CCD        Coiled-coil region of CCDC155 or KASH
      0.014   15.2   4.1      0.018   14.9   4.1    1.2  1  betaPIX_CC      betaPIX coiled coil
      0.018   15.2   9.2       0.02   15.0   9.2    1.1  1  ADIP            Afadin- and alpha -actinin-Binding
      0.021   15.2   8.3      0.025   15.0   8.3    1.1  1  CENP-H          Centromere protein H (CENP-H)
      0.024   13.9   8.2      0.027   13.8   8.2    1.1  1  DUF4763         Domain of unknown function (DUF4763)
      0.027   14.2   8.3      0.028   14.2   8.3    1.0  1  DUF4201         Domain of unknown function (DUF4201)
      0.028   14.9  12.8      0.033   14.7  12.8    1.1  1  APG6_N          Apg6 coiled-coil region
      0.031   14.5  11.5      0.034   14.4  11.5    1.1  1  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
      0.031   13.6   8.4      0.036   13.4   8.4    1.0  1  DUF2353         Uncharacterized coiled-coil protein (DUF2353)
      0.034   14.0   8.4      0.043   13.7   6.4    2.0  2  GIT_CC          GIT coiled-coil Rho guanine nucleotide exchan
      0.039   14.2   7.1      0.048   13.9   7.1    1.2  1  Seryl_tRNA_N    Seryl-tRNA synthetase N-terminal domain
      0.041   13.0   4.0      0.047   12.9   4.0    1.0  1  dCache_2        Cache domain
      0.049   13.7  15.2        0.2   11.8   2.6    2.8  3  bZIP_2          Basic region leucine zipper
      0.069   13.5   2.9      0.079   13.4   2.9    1.0  1  RasGEF_N_2      Rapamycin-insensitive companion of mTOR RasGE
      0.092   13.2   9.0       0.96    9.9   4.7    2.1  2  FlaC_arch       Flagella accessory protein C (FlaC)
        0.1   13.1   7.2       0.13   12.7   7.2    1.1  1  DUF4757         Domain of unknown function (DUF4757)
       0.11   12.6   9.0       0.15   12.2   8.2    1.6  2  Cnn_1N          Centrosomin N-terminal motif 1
       0.12   12.6  12.4       0.15   12.3  12.4    1.2  1  Jnk-SapK_ap_N   JNK_SAPK-associated protein-1
       0.13   10.4   5.6       0.15   10.3   5.6    1.0  1  COG6            Conserved oligomeric complex COG6
       0.15   11.6   4.6       0.17   11.4   4.6    1.0  1  HAUS6_N         HAUS augmin-like complex subunit 6 N-terminus
       0.16   12.0   4.3       0.21   11.7   4.3    1.2  1  DUF1664         Protein of unknown function (DUF1664)
       0.18   10.8   5.8       0.21   10.6   5.8    1.0  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
       0.19   11.8  13.8       0.73    9.9  13.8    1.8  1  TPR_MLP1_2      TPR/MLP1/MLP2-like protein
       0.21   11.7  10.3        3.7    7.7   0.6    2.4  2  bZIP_1          bZIP transcription factor
       0.23   11.7   9.9        1.6    8.9   8.5    2.3  2  JIP_LZII        JNK-interacting protein  leucine zipper II
       0.33   11.3   9.6       0.31   11.4   2.2    2.1  2  CLZ             C-terminal leucine zipper domain of cyclic nu
       0.35   11.6   5.5        0.4   11.4   5.5    1.1  1  DUF2203         Uncharacterized conserved protein (DUF2203)
       0.39   11.6   2.5        0.5   11.2   2.5    1.1  1  UPF0225         UPF0225 domain
       0.43   11.1   6.1       0.74   10.3   5.6    1.5  1  DUF4140         N-terminal domain of unknown function (DUF414
       0.64   10.1  10.5       0.69   10.0   1.4    2.1  2  DUF2205         Short coiled-coil protein
       0.68    8.8   5.9       0.69    8.8   5.9    1.0  1  Tox-ODYAM1      Toxin in Odyssella and Amoebophilus
        0.7   10.3   8.1        1.2    9.6   8.1    1.5  1  CCDC-167        Coiled-coil domain-containing protein 167
       0.78   10.1   9.9        3.8    7.9   2.5    2.5  2  TSC22           TSC-22/dip/bun family
       0.85    9.4  11.9       0.17   11.7   5.0    2.1  2  DivIC           Septum formation initiator
       0.89    8.7   5.2          1    8.5   5.2    1.0  1  Tho2            Transcription factor/nuclear export subunit p
        1.3    8.2   5.3        1.3    8.1   5.3    1.0  1  TMPIT           TMPIT-like protein
          2    8.8  12.3        2.2    8.7   2.4    2.1  2  CC2-LZ          Leucine zipper of domain CC2 of NEMO, NF-kapp
        2.3    8.5  11.0         38    4.6  11.0    2.0  1  Spc24           Spc24 subunit of Ndc80
        2.8    8.3   8.9        1.8    8.9   1.4    2.1  2  KxDL            Uncharacterized conserved protein
        3.7    7.8  12.5        1.6    9.0   1.0    2.8  3  HALZ            Homeobox associated leucine zipper
          5    7.8  12.9          2    9.1   5.8    2.4  2  SlyX            SlyX
        5.6    7.3  13.2         10    6.4  13.2    1.4  1  OmpH            Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0  16.9   3.1e-28     1e-25       1      71 []       1      78 [.       1      78 [. 0.98

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 3.1e-28
        ZapB  1 mslelLeqLEskiqkaidtitlLqmeieeLkeeneelkeenrele.......eeneqlkeereawqerlkkLLgklee 71
                msle++e+LEsk+q+aidtitlLqmeieeLke+n++l +e +  +       +en+qlke+++ wqerl++LLg++ee
  CTQ30596.1  1 MSLEVFEKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQhgreeleRENSQLKEQQQGWQERLQALLGRMEE 78
                9**************************************9999999999999************************97 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8  13.4   4.5e-07   0.00015      24     100 ..       2      75 ..       1      78 [. 0.89

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.5e-07
       DHR10  24 kidalqvvekdlrsciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreq 100
                 ++++++++e  ++++i+ +  ++ e+++l+e +   + l +++++ ++ ++eler+ ++l+ q + ++e+l+ l  +
  CTQ30596.1   2 SLEVFEKLESKVQQAIDTITLLQMEIEELKEKN---NTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQALLGR 75 
                 799**********************99888765...566789*****************************998655 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   7.4   2.6e-06   0.00086      14      82 ..       9      77 ..       5      79 .] 0.94

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.6e-06
   PspA_IM30 14 iselldkaeDPekileqairdmqselakarqalaqviarqkqlerkleeqkeqakklekkAkaALtkge 82
                + +++++a D+  +l+ +i++++++ + + q++ ++   + +ler+  + keq + ++++ +a+L + e
  CTQ30596.1  9 LESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQALLGRME 77
                6789*********************************************************99997655 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4  10.8   5.5e-06    0.0018      70     142 ..       6      78 ..       2      79 .] 0.90

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 5.5e-06
     UPF0242  70 leekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelklelee 142
                 +e+ e+k+++  + ++  + ++eel+e+++ L +e+++ ++  e+l++en qL+e+ +  +e  ++l+  +ee
  CTQ30596.1   6 FEKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQALLGRMEE 78 
                 56667888888889999999***************************************99999999888887 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7  10.6   5.4e-06    0.0018      40     111 ..       7      78 ..       2      79 .] 0.68

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.4e-06
     DUF3450  40 dklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllekmidrLeq 111
                 +kl+ + q+  + ++ l+ e+e+l+ +n+ l + v+s+++ +++le++ ++++e +++ +  l+ ++ r+e+
  CTQ30596.1   7 EKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQALLGRMEE 78 
                 566666777777777777777777777777777777777777777777777777777777666666666654 PP

>> CtIP_N  Tumour-suppressor protein CtIP N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   3.5   4.8e-05     0.016      86     120 .]       8      42 ..       4      42 .. 0.94
   2 !    7.9   1.0    0.0095       3.1      38      63 ..      49      74 ..      43      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.8e-05
      CtIP_N  86 efessklqslqlitiLtnEmntLkeenkkLkeelk 120
                  +es+ +q +  it L+ E ++Lke n++L +e++
  CTQ30596.1   8 KLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQ 42 
                 589999***************************97 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0095
      CtIP_N 38 eelfsknqqlreqqkalkenikvlen 63
                eel   n ql+eqq+  +e ++ l  
  CTQ30596.1 49 EELERENSQLKEQQQGWQERLQALLG 74
                67888999********9999998855 PP

>> Leu_zip  Leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   6.2     1e-05    0.0033     127     179 ..      19      71 ..       3      78 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1e-05
     Leu_zip 127 gaeLLkkeierLkeenekLkerlkelEkqatsaleeksklekalkelqkelge 179
                 ++ LL++eie+Lke+n++L + +++  +  +++ +e+s+l+++ +  q++l++
  CTQ30596.1  19 TITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQA 71 
                 689**************************************999988887765 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   7.8   1.3e-05    0.0043       9      72 ..       5      71 ..       2      78 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHXXXXXXXXXXXXXXXXXXXX CS
        YabA  9 kleeleeqleelleeleelkeelaelleenaeLele...neklrerleeeekkekekkkelsegken 72
                 +e+le+++++  ++++ l++e++el e+n++L  e    ++ re+le+e+++ ke+++  +e  + 
  CTQ30596.1  5 VFEKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEvqsAQHGREELERENSQLKEQQQGWQERLQA 71
                6899*******************************95445566777766666666666666655554 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   8.8   1.9e-05    0.0064      38     102 ..      11      75 ..       2      79 .] 0.91

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.9e-05
        HemX  38 aelqqqlaaleqqlaqveaekeqkqeleerlqqlaeklealekeleqlqkqleelqqqlskvsga 102
                 +++qq++ ++   + ++e++ke++++l +++q +++  e+le+e++ql++q++  q++l+++ g+
  CTQ30596.1  11 SKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQALLGR 75 
                 6889999999999999*********************************************9997 PP

>> Herpes_UL6  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   4.7   2.8e-05    0.0092     363     423 ..       2      63 ..       1      78 [. 0.75

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.8e-05
  Herpes_UL6 363 snsvikcleeqineqfdtiekLkkenelllkklkelekeLerlreeakk.eakarevdllts 423
                 s +v++ le+++++ +dti+ L+ e e l++k+++l +e + +++++++ e+++++ +  ++
  CTQ30596.1   2 SLEVFEKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREElERENSQLKEQQQ 63 
                 5689**************************************98887764333333333333 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9   9.4     4e-05     0.013       4      70 ..       7      71 ..       4      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4e-05
  Uso1_p115_C  4 seleseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelke 70
                 ++les+++++ d  + l+ e+++l+++ + l q+   ++a+++ +ele en++l+++++  +++l++
   CTQ30596.1  7 EKLESKVQQAIDTITLLQMEIEELKEKNNTLVQE--VQSAQHGREELERENSQLKEQQQGWQERLQA 71
                 799*******************************..99******************99999999876 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4  10.4   4.4e-05     0.014      52     109 ..       4      61 ..       1      78 [. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.4e-05
  CENP-F_leu_zip  52 aevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenl 109
                     +  e+l++++++   + + l++++++l++ +++L +e+q  q+  +eLe+ ns+l+++
      CTQ30596.1   4 EVFEKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQ 61 
                     6789999999999999999*********99999*********999****999999875 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   6.6   5.1e-05     0.017       2      37 ..      24      59 ..      23      78 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.1e-05
  Cep57_CLD_2  2 eaevktLqnrLdsltrklqvheeelkrLnkERdsal 37
                   e+++L+++++ l++++q++++ +++L +E++   
   CTQ30596.1 24 QMEIEELKEKNNTLVQEVQSAQHGREELERENSQLK 59
                 6799****************************9765 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3  12.5   4.1e-05     0.013      54     114 ..      12      72 ..       3      79 .] 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.1e-05
    KASH_CCD  54 stQqalqkaklleeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikl 114
                  +Qqa+    ll+ E+eelk+  ++l  + ++++  +++le+en +L+++ +  qe+++ l
  CTQ30596.1  12 KVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQAL 72 
                 3799999999**********9999999999999999999********99999999987655 PP

>> betaPIX_CC  betaPIX coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   4.1   5.4e-05     0.018      33      85 ..      16      66 ..       4      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.4e-05
  betaPIX_CC 33 lVDtVYaLkdevqelkqenkklkksleeEqkaRkdLEkvvrkllksindetwd 85
                 +Dt+  L+ e++elk+ n  l + +++ q+ R +LE+   +l ++  +++w+
  CTQ30596.1 16 AIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQ--QQGWQ 66
                58***********************************987766555..44555 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   9.2   6.3e-05      0.02      54     119 ..       5      70 ..       2      78 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.3e-05
        ADIP  54 qreslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelq 119
                 + e+l+ ++++   +i+ lq +ie lk+++  l +e++++q    +le+++ +l+++ ++ +e lq
  CTQ30596.1   5 VFEKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQ 70 
                 5689999*************************************************9999888877 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   8.3   7.6e-05     0.025      16      76 ..       7      66 ..       2      77 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.6e-05
      CENP-H 16 lklsqelrelqeeltevekenlrlkrknrelaaellelakekesekeklkeelekleaelk 76
                +kl+++++++ + +t ++ e+ +lk+kn++l++e++  +   e+ + +++++l++ ++  +
  CTQ30596.1  7 EKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELE-RENSQLKEQQQGWQ 66
                7999*******************************43333333333.34444444444433 PP

>> DUF4763  Domain of unknown function (DUF4763)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   8.2   8.4e-05     0.027      92     153 ..      17      78 ..       6      79 .] 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.4e-05
     DUF4763  92 lelltseqpeileLqrnnhkLrqqlaelqqhlkasrkslkelreslcqekkrlrklqkrlne 153
                 ++ +t  q ei eL+ +n  L+q+++++q+ +++ + + ++l+e+++  ++rl++l  r++e
  CTQ30596.1  17 IDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQALLGRMEE 78 
                 444455599************************************************99998 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   8.3   8.5e-05     0.028      42     116 ..       4      78 ..       1      79 [] 0.92

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.5e-05
     DUF4201  42 idFeqlqienqalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelyk 116
                 + Fe+l+ ++q+  ++I   + e+++lk+k ++ v++++  +  + +le+e+s+lk++ +  +erl++l  ++++
  CTQ30596.1   4 EVFEKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQALLGRMEE 78 
                 569*************************************************************99998777665 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7  12.8    0.0001     0.033      33      99 ..       7      70 ..       3      78 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 0.0001
      APG6_N 33 kklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeee 99
                +kl+++ +++    + +  l+ e+e+l+++ ++l++e + +++ reele+e ++l+e+ +  +e  +
  CTQ30596.1  7 EKLESKVQQA---IDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQ 70
                5566554443...367888899999999999999999999999999999999999998887766655 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4  11.5    0.0001     0.034      10      85 ..       2      74 ..       1      79 [] 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 0.0001
  TMF_TATA_bd 10 svqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLe 85
                 s +++e+l+s++++    ++ l+ e+e+l+++ +++ +e+ +  +  eel++++++l+e+++     qer+++lL 
   CTQ30596.1  2 SLEVFEKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQ---GWQERLQALLG 74
                 78899***************************************999999998887777766...55566666664 PP

>> DUF2353  Uncharacterized coiled-coil protein (DUF2353)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   8.4   0.00011     0.036      84     159 ..       6      79 .]       2      79 .] 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00011
     DUF2353  84 veeLrqklkeaqgDiklLReqlarqrlglkdedlletrhssaeereelvkqlEklkekiqqlerdlkavldekeel 159
                 +e+L +k++ a + i lL +++++   + k+++l+++ +s+++ reel ++  +lke++q ++  l+a+l+  ee+
  CTQ30596.1   6 FEKLESKVQQAIDTITLLQMEIEEL--KEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQALLGRMEEV 79 
                 689***************9777666..55588888998899*****************************999986 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.9    0.0023      0.74      40      65 ..      14      39 ..       3      40 .. 0.68
   2 ?   13.7   6.4   0.00013     0.043      28      66 .]      23      61 ..      18      61 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0023
      GIT_CC 40 tslsdelrlLQskvqkLqaeNaqlrd 65
                ++  d ++lLQ ++++L++ N++l +
  CTQ30596.1 14 QQAIDTITLLQMEIEELKEKNNTLVQ 39
                34456788888888888888887754 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 0.00013
      GIT_CC 28 seakiqqLlkvNtslsdelrlLQskvqkLqaeNaqlrdq 66
                    i++L++ N+ l +e++  Q   ++L+ eN+ql++q
  CTQ30596.1 23 LQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQ 61
                567899******************************987 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   7.1   0.00015     0.048      30      99 ..      12      78 ..       3      79 .] 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00015
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N 30 elleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelek 99
                  ++ ++ +    lq e+eel+++ N+l +e+++a      +eel  e ++lke+ +  +++l++l  ++e+
    CTQ30596.1 12 KVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQH---GREELERENSQLKEQQQGWQERLQALLGRMEE 78
                  56666667777999****************99986...47899999999999999999999999887775 PP

>> dCache_2  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   4.0   0.00014     0.047      22      88 ..       7      76 ..       3      78 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00014
    dCache_2 22 ellksevdsaielie..yeknsleeslkesLksrveeaysiaeeiyekykn.elseeeakklikealrsi 88
                e+l+s+v++ai++i+    + +  ++ +++L ++v++a++  ee+ +++ + +  ++  ++++ ++l  +
  CTQ30596.1  7 EKLESKVQQAIDTITllQMEIEELKEKNNTLVQEVQSAQHGREELERENSQlKEQQQGWQERLQALLGRM 76
                799************77777778899**********************9997777777999998888766 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.5       0.2        66      28      52 ..       7      31 ..       6      31 .. 0.87
   2 ?   11.8   2.6    0.0006       0.2      30      51 ..      23      44 ..      18      46 .. 0.90
   3 ?    9.1   5.5     0.004       1.3      26      49 ..      40      63 ..      39      73 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.2
                HHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 28 eeleervkeLeeeNaqLrqkveqLe 52
                e+le++v++    +  L+ ++e+L+
  CTQ30596.1  7 EKLESKVQQAIDTITLLQMEIEELK 31
                6799999999999999999999986 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0006
                HHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 30 leervkeLeeeNaqLrqkveqL 51
                l+++++eL+e+N++L q+v++ 
  CTQ30596.1 23 LQMEIEELKEKNNTLVQEVQSA 44
                89****************9975 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.004
                HHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 26 keeeleervkeLeeeNaqLrqkve 49
                + ++ ++  +eLe+eN+qL+++++
  CTQ30596.1 40 EVQSAQHGREELERENSQLKEQQQ 63
                678999*************88875 PP

>> RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.9   0.00024     0.079      26      89 ..       3      68 ..       1      72 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00024
  RasGEF_N_2 26 leiLeea.cddkeslevlvelkpslqhlgeigslLllkllstssGfkylqeln.fveeeldkWiek 89
                le++e+  ++ ++ + +++ l+ ++++l+e++++L+ ++ s + G + l+ +n  ++e+ + W e 
  CTQ30596.1  3 LEVFEKLeSKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENsQLKEQQQGWQER 68
                67888884455599999999*****************************88887*********986 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.7    0.0029      0.96       3      38 ..       7      42 ..       6      45 .. 0.94
   2 ?    8.0   0.7     0.011       3.6       5      41 ..      37      73 ..      35      79 .] 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0029
   FlaC_arch  3 delEnklsklsteletvkkeneelsksveelkenVk 38
                ++lE+k+++   +++ ++ e+eel+++ ++l ++V+
  CTQ30596.1  7 EKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQ 42
                689*****************************9997 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.011
   FlaC_arch  5 lEnklsklsteletvkkeneelsksveelkenVkdll 41
                l +++++ +   e +++en++l+++ +  +e+ + ll
  CTQ30596.1 37 LVQEVQSAQHGREELERENSQLKEQQQGWQERLQALL 73
                56788888888999**********9999999999887 PP

>> DUF4757  Domain of unknown function (DUF4757)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   7.2    0.0004      0.13      66     123 ..       5      69 ..       2      71 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0004
     DUF4757  66 lverlkeklsdderSkslsdiraeelsll.....salsqvry..eelqkirnqlkEeedkWqdDL 123
                 ++e+l++k+++      l +++ eel+++     ++ + +++  eel + ++qlkE+++ Wq+ L
  CTQ30596.1   5 VFEKLESKVQQAIDTITLLQMEIEELKEKnntlvQEVQSAQHgrEELERENSQLKEQQQGWQERL 69 
                 567778888888888888888666644332101244444443449*****************988 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.3     0.017       5.6      37      70 ..      12      45 ..       4      47 .. 0.53
   2 ?   12.2   8.2   0.00047      0.15       9      62 ..      20      72 ..      14      79 .] 0.80

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.017
      Cnn_1N 37 qkeellkenielkveveslqkelkekkkllreae 70
                ++++++++ + l+ e+e+l+ +++++ +++++a+
  CTQ30596.1 12 KVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQ 45
                4555555555555555555555555555555544 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00047
      Cnn_1N  9 idkLkKENFdLKLriyfLeerleklseeqkeellkenielkveveslqkelkek 62
                i  L+ E   LK + ++L ++++  +   +eel++en +lk++ +  q  l+++
  CTQ30596.1 20 ITLLQMEIEELKEKNNTLVQEVQSAQH-GREELERENSQLKEQQQGWQERLQAL 72
                556777777777777777777777766.9****************999999987 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3  12.4   0.00047      0.15      35     103 ..       6      78 ..       3      79 .] 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00047
  Jnk-SapK_ap_N  35 LElLeslasrn....eeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqlee 103
                     E Les +++        + e+eel+e++++L +e +  ++ r++ e+e  ++ +q ++ ++ lq+ + ++ee
     CTQ30596.1   6 FEKLESKVQQAidtiTLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQALLGRMEE 78 
                    5566655554411113468899999999999999999999999999999999999999999999888877765 PP

>> COG6  Conserved oligomeric complex COG6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.6   0.00045      0.15      37      98 ..      11      72 ..       2      77 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00045
        COG6 37 eefqpvaeqLkriesdveklnelcdemkkklssakeetsdlleeaeeLkeekkklelkqkll 98
                ++ q++ +++  ++ ++e+l+e ++++ ++++sa++  ++l +e ++Lke+++  +++ + l
  CTQ30596.1 11 SKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQAL 72
                567888899999999************************************99999887654 PP

>> HAUS6_N  HAUS augmin-like complex subunit 6 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.6   0.00052      0.17     130     197 ..       9      75 ..       2      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00052
     HAUS6_N 130 lalevreaaskkaqdlsklvaahrvslrrflrekaaadrarqkyqenaqllekkerelraeleelqae 197
                 l+ +v++a+++ +  l++ +++ + + + +++e+++a + r++++++ + l+++++  +++l++l  +
  CTQ30596.1   9 LESKVQQAIDTIT-LLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQALLGR 75 
                 4556666666655.99999999999999999*****99999***999999999999999999987655 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   4.3   0.00063      0.21      69     124 .]       7      62 ..       3      78 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00063
     DUF1664  69 drvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerieekQ 124
                 +++++k+++ +++++ ++ e++e++e+ +++ ++v+s ++  e+le + ++++e+Q
  CTQ30596.1   7 EKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQ 62 
                 56666777777777777777777777777777777777777777776666666555 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.8   0.00065      0.21      39     105 ..       7      70 ..       3      76 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00065
       Atg14  39 eslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkkla 105
                 e l++k+++a+ + +    l+++i+ +k+k ++l +++++ +   +el+   sqlk++ +  +++l+
  CTQ30596.1   7 EKLESKVQQAIDTIT---LLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQ 70 
                 567888888888888...7777777777777777777777777777777777777777665555554 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  13.8    0.0022      0.73      53     114 ..      14      78 ..       4      79 .] 0.57

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0022
  TPR_MLP1_2  53 aedvkelqalreelnelkaeiaelkaeaesak...aeleeseesweeqkeelekelselekried 114
                  +++++++ l  e++elk++ ++l +e++sa+   +ele++ ++++eq++  +++l+ l  r+e+
  CTQ30596.1  14 QQAIDTITLLQMEIEELKEKNNTLVQEVQSAQhgrEELERENSQLKEQQQGWQERLQALLGRMEE 78 
                 44555555555555555555555555555553111566666677777777777777777666666 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  10.6     0.062        20      25      62 ..      24      61 ..       3      63 .. 0.78
   2 ?    7.7   0.6     0.011       3.7      36      60 ..      49      73 ..      45      77 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.062
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 25 qaeieeLerrvkaLekeNksLkseleelkkevekLksk 62
                q+eieeL+++  +L +e +s +   eel+ e+++Lk++
  CTQ30596.1 24 QMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQ 61
                66777777777777777777777777777777777766 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.011
                HHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 36 kaLekeNksLkseleelkkevekLk 60
                ++Le eN++Lk++ +  ++  + L+
  CTQ30596.1 49 EELERENSQLKEQQQGWQERLQALL 73
                6788899999988888888877775 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   8.5     0.005       1.6      33      69 ..      25      61 ..       9      63 .. 0.87
   2 ?    8.0   1.4    0.0095       3.1      36      65 ..      49      78 ..      48      79 .] 0.78

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.005
    JIP_LZII 33 arvdeLtsereiLreEleslqkakerlesrikelEee 69
                 +++eL++ +++L +E++s q+ +e+le + ++l e+
  CTQ30596.1 25 MEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQ 61
                479*************************999998775 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0095
    JIP_LZII 36 deLtsereiLreEleslqkakerlesrike 65
                +eL  e++ L+e  +  q+ +++l  r++e
  CTQ30596.1 49 EELERENSQLKEQQQGWQERLQALLGRMEE 78
                688888888888888888888888888777 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.2   0.00094      0.31      20      58 ..       7      45 ..       3      48 .. 0.89
   2 ?    8.3   3.2    0.0092         3      11      56 ..      33      78 ..      33      79 .] 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00094
         CLZ 20 akagaeqkeleekverLessLeaLqtrlarLlaeyessq 58
                +k +++ +++ + ++ L+ ++e L+ + + L++e++s+q
  CTQ30596.1  7 EKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQ 45
                67778888999999***********************99 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0092
         CLZ 11 KdglLDeeaakagaeqkeleekverLessLeaLqtrlarLlaeyes 56
                K + L +e+++a+  ++ele+  ++L+++ +  q rl+ Ll+ +e+
  CTQ30596.1 33 KNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQALLGRMEE 78
                778888999999*****************************99886 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   5.5    0.0012       0.4       5      71 ..      13      78 ..       8      79 .] 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0012
     DUF2203  5 leeAnalLpllkelleelralrkeleeleeeleeakaeaekseaaeleaeleeleaeieelveeiee 71
                +++A ++++ll+  +eel+++++ l + +++ ++ ++e e+ e ++l+++ +  ++++++l+ ++ee
  CTQ30596.1 13 VQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELER-ENSQLKEQQQGWQERLQALLGRMEE 78
                68899999999999999999999999988888888888654.4677777778888888887777765 PP

>> UPF0225  UPF0225 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.5    0.0015       0.5      33      94 ..       8      65 ..       3      66 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0015
     UPF0225 33 eeeaeleatakkvkflkleiletekeekedeatVeFkarlkekgkektlhErSrFvredgrW 94
                + e+++++ +++++ l++ei+e +   +++ +t+  +++  ++g+e+   E+S+ +++++ W
  CTQ30596.1  8 KLESKVQQAIDTITLLQMEIEELK---EKN-NTLVQEVQSAQHGREELERENSQLKEQQQGW 65
                567889999************999...344.444458899999****************999 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.6    0.0023      0.74      46      98 .]      19      72 ..      12      72 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0023
     DUF4140 46 aatildvqvervpnreaeee...elkalraeleeledelaaledelaaaearlafl 98
                ++t+l++++e+   +e+ ++   e+++++   eele+e ++l+++++  ++rl++l
  CTQ30596.1 19 TITLLQMEIEE--LKEKNNTlvqEVQSAQHGREELERENSQLKEQQQGWQERLQAL 72
                34555555555..44444445557****************************9986 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   4.8      0.17        55      19      54 ..       7      42 ..       1      56 [. 0.67
   2 ?   10.0   1.4    0.0021      0.69      11      42 ..      49      79 .]      41      79 .] 0.81

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.17
     DUF2205 19 erLqqqakeLqssLqaLaervdeVkeehdKLesenr 54
                e+L++++++  ++   L   ++e ke ++ L  e +
  CTQ30596.1  7 EKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQ 42
                567777777777777777777777777777766654 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0021
     DUF2205 11 eklerearerLqqqakeLqssLqaLaervdeV 42
                e+lere   +L++q +  q+ LqaL+ r +eV
  CTQ30596.1 49 EELERE-NSQLKEQQQGWQERLQALLGRMEEV 79
                444444.46899******************98 PP

>> Tox-ODYAM1  Toxin in Odyssella and Amoebophilus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.9    0.0021      0.69     120     182 ..      15      76 ..       2      79 .] 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0021
  Tox-ODYAM1 120 errkevttsyqkkeeelekkkedisaklkvakhlrvelkkkeddlvkqleeeeelykvalkrl 182
                 +   +  t+ q + eel++k++++ ++++ a+h r el++++++l +q +  +e  ++ l r+
  CTQ30596.1  15 QA-IDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQALLGRM 76 
                 33.3445667888899******************************99988888777777665 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   8.1    0.0036       1.2      17      61 ..      24      72 ..       4      77 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0036
    CCDC-167 17 rerLeaverr....lrkeelseeeResleeEeaslkeqleenekeLksL 61
                + ++e++  +    +++++  +  Re+le+E ++lkeq +  +++L+ L
  CTQ30596.1 24 QMEIEELKEKnntlVQEVQSAQHGREELERENSQLKEQQQGWQERLQAL 72
                333333322211113445555556**********************998 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.5     0.012       3.8      22      45 ..      19      42 ..       4      48 .. 0.64
   2 ?    6.7   0.9     0.028       9.1      31      43 ..      49      61 ..      45      73 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.012
       TSC22 22 kIkeLeernseleeENslLkalas 45
                +I+ L+++++el+e N++L + + 
  CTQ30596.1 19 TITLLQMEIEELKEKNNTLVQEVQ 42
                555555566666666655555544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.028
       TSC22 31 seleeENslLkal 43
                +ele+ENs+Lk++
  CTQ30596.1 49 EELERENSQLKEQ 61
                689*******975 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   5.0   0.00051      0.17      19      59 ..      13      53 ..       5      54 .. 0.86
   2 ?    4.2   2.3      0.11        37      27      50 ..      49      72 ..      48      78 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00051
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXX CS
       DivIC 19 ykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyiee 59
                ++q    i+ lq e+++lk++n+ L +ev+  +++++ +e+
  CTQ30596.1 13 VQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELER 53
                5666678999**********************99*999986 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.11
                HHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC 27 aalqaelaklkaeneeLeaevkdL 50
                ++l++e+ +lk++++  +++++ L
  CTQ30596.1 49 EELERENSQLKEQQQGWQERLQAL 72
                577888888888887777766655 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.2    0.0031         1      39      90 ..      14      72 ..       3      78 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0031
        Tho2 39 eel.......akdrsderaaakkkkkekkrlkeliekLeeEkkeqiehvekvkkrLkee 90
                ++        + + ++ +++ +   +e +  ++ +e+Le+E+++ +e+++ +++rL+  
  CTQ30596.1 14 QQAidtitllQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQGWQERLQAL 72
                33333335543333333566666788888888889999999999999999999999875 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.3    0.0041       1.3       4      68 ..       6      69 ..       3      79 .] 0.62

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0041
       TMPIT  4 weelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeev 68
                +e+le+++++  +t + ++ ++eel++ ++++++e+++ ++  +el+++ ++lk++++   +e++
  CTQ30596.1  6 FEKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELERENSQLKEQQQ-GWQERL 69
                5677777777777777777777777777777777777777766666666666666643.222333 PP

>> CC2-LZ  Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.4    0.0068       2.2      13      52 ..       3      42 ..       1      46 [. 0.86
   2 ?    5.8   2.8     0.054        18      74      99 ..      47      72 ..      43      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0068
      CC2-LZ 13 keeieeLkaqlqaaeealaakqeeidelkeeikkkeeele 52
                 e +e+L+ ++q+a + ++  q ei+elke+++   +e++
  CTQ30596.1  3 LEVFEKLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQ 42
                57789*************************9987776665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.054
      CC2-LZ 74 aReklheekerlaaqleelqkqneqL 99
                 Re+l  e+++l++q +  q++++ L
  CTQ30596.1 47 GREELERENSQLKEQQQGWQERLQAL 72
                5******************9999987 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  11.0      0.12        38       1      47 [.       8      57 ..       8      78 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.12
       Spc24  1 kldnekfriakelsdleselesleselaelkeeleeleeesee...kese 47
                kl+++ ++++  ++ l++e+e+l+++ + l +e++  +  +ee   ++s+
  CTQ30596.1  8 KLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREElerENSQ 57
                57888899999999999999999999999999999988888876543332 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   2.1       0.3        97       8      39 ..      14      44 ..       6      49 .. 0.57
   2 ?    8.9   1.4    0.0055       1.8      23      52 ..      49      78 ..      41      79 .] 0.88

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.3
        KxDL  8 sedldeilalQaqtsgrlnkknreLlelnals 39
                ++++d+i  lQ ++  +l++kn++L +  + +
  CTQ30596.1 14 QQAIDTITLLQMEI-EELKEKNNTLVQEVQSA 44
                45666666666665.34555555554444444 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0055
        KxDL 23 grlnkknreLlelnalsqerlaklrarfkq 52
                 +l+ +n +L+e+++  qerl+ l  r+++
  CTQ30596.1 49 EELERENSQLKEQQQGWQERLQALLGRMEE 78
                689*******************99888875 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       9.2     3e+03      29      36 ..       7      14 ..       6      15 .. 0.65
   2 ?    9.0   1.0     0.005       1.6      17      37 ..      23      43 ..      22      44 .. 0.91
   3 ?    5.8   1.5     0.051        17      22      42 ..      49      69 ..      45      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 9.2
        HALZ 29 ekLkaelq 36
                ekL++++q
  CTQ30596.1  7 EKLESKVQ 14
                56777776 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.005
        HALZ 17 LksdydsLkkenekLkaelqe 37
                L+++ + Lk+ n++L +e+q+
  CTQ30596.1 23 LQMEIEELKEKNNTLVQEVQS 43
                788999*************96 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.051
        HALZ 22 dsLkkenekLkaelqeLkekl 42
                + L++en +Lk + q   e+l
  CTQ30596.1 49 EELERENSQLKEQQQGWQERL 69
                8899*******9988766666 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.8    0.0061         2      16      58 ..      10      52 ..       4      57 .. 0.76
   2 ?    1.3   5.3       1.7   5.5e+02      29      55 ..      44      70 ..      39      79 .] 0.61

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0061
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXX CS
        SlyX 16 edtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgase 58
                e  +++  d+++  q +i++l+++ + l++++++++   ++ e
  CTQ30596.1 10 ESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQSAQHGREELE 52
                5556666788999999999999999999999988887766544 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 1.7
                HHHHHHHHHHHHHHHHHT-XXXXXXXX CS
        SlyX 29 qqqqidrlqrqlrllaerlkeleessg 55
                 q+  ++l+r+  +l+e+ +  +e+ +
  CTQ30596.1 44 AQHGREELERENSQLKEQQQGWQERLQ 70
                555666777777777777766655543 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  13.2     0.032        10      23      78 ..       8      71 ..       2      78 .. 0.46

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.032
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHH...HHHHHHHHHHHHHH CS
        OmpH 23 qlekkfkklqaeleakekelqklqeelqkkakkle.....keekeqe...lqkkeqelqqkqqq 78
                +le+k ++  ++++ ++ e+++l+e+ ++  ++ +     +ee e+e   l++++q +q+++q+
  CTQ30596.1  8 KLESKVQQAIDTITLLQMEIEELKEKNNTLVQEVQsaqhgREELEREnsqLKEQQQGWQERLQA 71
                4444444444444444443333333332222221122234555555566677777777775554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2924  (0.163088); expected 358.6 (0.02)
Passed bias filter:                     1181  (0.0658709); expected 358.6 (0.02)
Passed Vit filter:                       234  (0.0130515); expected 17.9 (0.001)
Passed Fwd filter:                        56  (0.00312343); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              55  [number of targets reported over threshold]
# CPU time: 0.52u 0.30s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 547.60
//
Query:       CTQ30597.1  [L=283]
Description: glycerol facilitator [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-72  242.1  12.3    6.8e-72  241.9  12.3    1.0  1  MIP       Major intrinsic protein


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.9  12.3   3.8e-76   6.8e-72       2     227 .]       2     251 ..       1     251 [. 0.97

  Alignments for each domain:
  == domain 1  score: 241.9 bits;  conditional E-value: 3.8e-76
                 SCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHH CS
         MIP   2 lssvkflravlAEflatlllvfigvgsalnvkkkvsslaslvsvtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQl 100
                 +++++++ +++AEfl+t ll+f+gvg+++++k + +s++     ++e +++ +gl++a+++yl+ag+SGaHlNPavT+al+++++++ ++++ +i++Q 
  CTQ30597.1   2 SQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFG-----QWE-ISIIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFEGRKVVPFIISQF 94 
                 56788899**************************98855.....665.5566*********************************************** PP

                 HHHHHHHHHHHHHCHHH.................HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHH CS
         MIP 101 lGaivaaallklltkgl.................esraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilv 182
                 +Ga++aaal+++l+++l                  + ag f+++++p+++++qa++vE+++t++L+ v++altdd +   +g lapl+igll+a+i ++
  CTQ30597.1  95 AGAFCAAALVYGLYYNLfldyetthhmirgsvesLDLAGIFSTYPNPHINFVQAFAVEMVITAILMGVILALTDDGNGIPRGPLAPLLIGLLIAVIGAS 193
                 ********************************99999************************************************************** PP

                 HHHHHST-SSHHHHHHHHHHHTH.............STTTTHHHHHHHHHHHHHHHHH CS
         MIP 183 gipltGaamNpArslgpavvlnk.............fedhwvylvGPliGailgalvY 227
                 ++pltG+amNpAr++gp+ +++              + +++v+l +P++Ga+lga+ Y
  CTQ30597.1 194 MGPLTGFAMNPARDIGPKAFAWLagwgdvaftggkdIPYFLVPLCAPVVGAALGAFSY 251
                 ********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2103.54
//
Query:       CTQ30598.1  [L=503]
Description: glycerol kinase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-93  311.2   0.2    6.5e-93  310.8   0.2    1.2  1  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
    6.6e-63  212.0   0.4    4.8e-62  209.2   0.5    2.0  2  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.8   0.2   7.3e-97   6.5e-93       1     245 []       6     253 ..       6     253 .. 0.99

  Alignments for each domain:
  == domain 1  score: 310.8 bits;  conditional E-value: 7.3e-97
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTT.EESSEEE-T CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqagisekqikaIgisgqreglvllDknd.kpLynailw 98 
                 +i++lD+Gtts++a+v+d+++++v+++q+e+e+++pk+gw+e+dp+eiw+++++++ ++l++a+i+++qi+aIgi++qre++v++++++ kp+ynai+w
  CTQ30598.1   6 YIVALDQGTTSSRAVVMDHDANIVSVSQREFEQIYPKPGWVEHDPMEIWASQSSTLVEALAKADINSDQIAAIGITNQRETVVVWERETgKPIYNAIVW 104
                 89************************************************************************************************* PP

                 T--TTHHHHHHHHHTTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHC....EEEEHHHHHHHHHCT..--EEEHHHHCTTTSEETTTTEE-HH CS
      FGGY_N  99 kdrrtaeiveklkeegnekklyektglvlstgftlsklkWlkenepevfekie....kflliddyLiwrLtg..qfvtdvtnasesmlfnikklewdee 191
                 ++rrtaei+e+lk++g e+++++ tglv++++f+++k+kW+++++++++e+++    +f+++d++Liw++t+  ++vtd+tnas++mlfn+++l+wd++
  CTQ30598.1 105 QCRRTAEICEQLKRDGMEEYIRKATGLVVDPYFSGTKVKWILDHVEGSRERAKrgelLFGTVDTWLIWKMTQgrVHVTDYTNASRTMLFNLHDLDWDDK 203
                 *************************************************************************************************** PP

                 HHHHTT--GGGS-EEE-TCCEEEEEECCCCCCTT.S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 192 llailgipeelLPklvesseiigelkpelaaklGlkegvpvvggggDqqaaalG 245
                 +l++l+ip+++LP++++sse++g++++  +  +    ++p++g++gDqqaa++G
  CTQ30598.1 204 MLDALDIPRAMLPEVRKSSEVYGQTNIGGKGGT----RIPIAGIAGDQQAALFG 253
                 ****************************99999....9***************9 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.055     5e+02      64      98 ..     106     140 ..      65     152 .. 0.79
   2 !  209.2   0.5   5.4e-66   4.8e-62       1     197 [.     262     451 ..     262     452 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.055
      FGGY_C  64 irdageveeslaelaaaeavadaggvvfvpafsgl 98 
                  r+++e++e+l++    e   +a g+v++p+fsg 
  CTQ30598.1 106 CRRTAEICEQLKRDGMEEYIRKATGLVVDPYFSGT 140
                 45666668888877777888899999999999996 PP

  == domain 2  score: 209.2 bits;  conditional E-value: 5.4e-66
      FGGY_C   1 akvslGTssflll.vgtkpvisehglltpva.gedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvfvpafsg 97 
                 ak+++GT++f+l+ +g+k v s+hgllt++a g+ g+ +yaleg++++ag+ ++wl+d+ +l   i+da +  e  a      +v d++gv++vpaf+g
  CTQ30598.1 262 AKNTYGTGCFMLMnTGEKAVTSTHGLLTTIAcGPRGEVNYALEGAVFMAGASIQWLRDEMKL---ISDAFDS-EYFA-----TKVKDTNGVYVVPAFTG 351
                 79***********9999999***********988899**********************877...8888886.7777.....9**************** PP

      FGGY_C  98 lrapywdpdargtitglsssttlahiarAaleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilgvpVerpktaeatalGaAilAav 196
                 l apywdp arg+i+gl+++ +  hi+rA+le++a+q+r++lea+++dsg+ l  l+vdGG++ n++lmq++ dilg+ Verp+ +e talGaA+lA++
  CTQ30598.1 352 LGAPYWDPYARGAIFGLTRGVNSNHIIRATLESIAFQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGL 450
                 **************************************************************************************************9 PP

      FGGY_C 197 a 197
                 a
  CTQ30598.1 451 A 451
                 8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3486.28
//
Query:       CTQ30599.1  [L=400]
Description: glutamate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.9e-159  530.2  22.5   2.4e-159  529.9  22.5    1.1  1  Glt_symporter  Sodium/glutamate symporter
  ------ inclusion threshold ------
        1.2    9.1   7.6       0.12   12.3   0.4    2.9  3  TraQ           Type-F conjugative transfer system pilin chape


Domain annotation for each model (and alignments):
>> Glt_symporter  Sodium/glutamate symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  529.9  22.5  2.7e-163  2.4e-159       1     368 []       2     366 ..       2     366 .. 0.98

  Alignments for each domain:
  == domain 1  score: 529.9 bits;  conditional E-value: 2.7e-163
  Glt_symporter   1 ikldaletlvvailvlllGkalvkkvkfLkkfniPepvvgGlivallllllkkisglelefdaslqdvlmlaffttiGLsanlkllkkGGkvllvf 96 
                    ++ld+l+tlv+a+lvlllG++lv++v+fLkk++iPepv+gGl+val+ll+lkk++ +e++fd+sl+d+lmlaff+tiGL+anl++l++GGkvl  f
     CTQ30599.1   2 FHLDTLSTLVAATLVLLLGRKLVQTVPFLKKYTIPEPVAGGLLVALALLALKKSMDIEIDFDMSLKDPLMLAFFATIGLNANLASLRAGGKVLGTF 97 
                    589********************************************************************************************* PP

  Glt_symporter  97 llvvailiviqnlvGvslasllgldpllGllaGsislsGGhGtaaawakvladkyglqnalevalacatfGlvlGGliGgPvakfLikrnklkeek 192
                    l+vv+ l+++qn++G+++a+llgldpl+GllaGsi+lsGGhGt+aaw+k++ ++yg++na+eva+acatfGlvlGGliGgPva++L+k+++ +++ 
     CTQ30599.1  98 LIVVVGLLLLQNALGIGMATLLGLDPLMGLLAGSITLSGGHGTGAAWSKLFVERYGFANATEVAMACATFGLVLGGLIGGPVARYLVKHSS-SPDG 192
                    *****************************************************************************************96.4555 PP

  Glt_symporter 193 eedtkeevleeafekekekrkitakslletlaliliclvvgkylsalvketalelPtfvlalfvgvilrnllellklkkveekavdvlgdvsLslf 288
                    + d++     +afek+++ r it+ +l+e +ali+icl++gk++++l++  ++elPtfv++lf+gvil+n l l+ l++v+++av+vlg+vsLslf
     CTQ30599.1 193 TPDDQV--APTAFEKPDVGRVITSLVLIESIALIAICLTLGKVVAQLLAGSVFELPTFVCVLFIGVILSNSLALAGLYRVFDRAVSVLGNVSLSLF 286
                    555444..68************************************************************************************** PP

  Glt_symporter 289 LalalmslkllelaklalpllvillvqvvvlvlfailvtfrllGkdYdaavlsaGflGfglGatPtaianmqavtekfgp 368
                    La+almslkl+ela+lalp+++il+vq ++++l+a++vt+r++Gk+Ydaavl+aG++GfglGatPtaianmqa+t++fgp
     CTQ30599.1 287 LAMALMSLKLWELASLALPMIIILAVQALAMALYAVFVTYRMMGKNYDAAVLAAGHCGFGLGATPTAIANMQAITDRFGP 366
                    ******************************************************************************97 PP

>> TraQ  Type-F conjugative transfer system pilin chaperone (TraQ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.18   1.7e+03      21      48 ..      94     121 ..      92     133 .. 0.85
   2 ?   12.3   0.4   1.3e-05      0.12      20      65 ..     229     277 ..     224     293 .. 0.81
   3 ?   -1.6   0.2      0.29   2.6e+03      36      59 ..     305     329 ..     277     339 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.18
        TraQ  21 lGvwfhlvarlvyrkPelavllaeilav 48 
                 lG ++ +v +l   +  l + +a +l++
  CTQ30599.1  94 LGTFLIVVVGLLLLQNALGIGMATLLGL 121
                 7999999999999999999999999987 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.3e-05
        TraQ  20 slG.vwfhlvarlvyrkPela..vllaeilavglvliGgyrildaliar 65 
                 +lG v  +l+a+ v++ P +   ++++ il+ +l+l G yr++d+ ++ 
  CTQ30599.1 229 TLGkVVAQLLAGSVFELPTFVcvLFIGVILSNSLALAGLYRVFDRAVSV 277
                 5553567899********9972256799****************98865 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.29
        TraQ  36 Pelavllaeilavgl.vliGgyril 59 
                 P + +l+ + la++l +++ +yr++
  CTQ30599.1 305 PMIIILAVQALAMALyAVFVTYRMM 329
                 4444445555555543456667765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       882  (0.049194); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3236.13
//
Query:       CTQ30600.1  [L=463]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.3e-108  361.5  39.6   5.8e-108  361.1  39.6    1.2  1  Xan_ur_permease  Permease family
  ------ inclusion threshold ------
      0.037   13.8   0.3      0.075   12.8   0.3    1.5  1  SprB             SprB repeat
       0.73   10.1   4.9        1.3    9.3   0.9    3.1  3  DUF3925          Protein of unknown function (DUF3925)
        1.4    9.1   6.9       0.93    9.7   0.7    3.0  2  YtpI             YtpI-like protein


Domain annotation for each model (and alignments):
>> Xan_ur_permease  Permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.1  39.6  1.3e-111  5.8e-108       2     387 ..      34     426 ..      33     428 .. 0.99

  Alignments for each domain:
  == domain 1  score: 361.1 bits;  conditional E-value: 1.3e-111
                      HHHHHHHHHHHHHHHHHHHHHHTTTS-..........H.HHHHHHHHHHHHHHHH...HTTT-----EEE-GGGHHHHHGGG-.........HH CS
  Xan_ur_permease   2 qllllglQhllamfaalvvvPllvgdalgl.aeelrqlisatllasGiatllqll...ifgirlpillgssfafvtalmialGsa.....edie 86 
                      q+l++++Qhllamf+a+++++ll+++algl a++++++is++l+asG+a+++q+    ++g++l +++g+sf+fv+ ++i+ G+a     +d+ 
       CTQ30600.1  34 QTLFAAFQHLLAMFVAVITPALLICQALGLpAQDTQHIISMSLFASGVASIIQIKawgPVGSGLLSIQGTSFNFVA-PLIMGGTAlktggADVP 126
                      89*****************************************************99*******************.******99********* PP

                      HHHHHHHHHHHHHHHHHHHHHTT-SH.HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS-...BTT.B---HHHHHHHHHHHHHHHHHHHSSS CS
  Xan_ur_permease  87 ialagllgallvagvlfilisltglrgrlarlipPvvtgpvvlliGlslaqiavkkvgggwaa.vegltvvslkllllavvvllvilllsvflk 179
                      +++a+l+g+l++a+++ +++s++++    +r+i+P+v+g+vv++iGlsl+q++++++ggg+aa ++  t++++k+llla +vl++i++l++ ++
       CTQ30600.1 127 TMMAALFGTLMLASCTEMVLSRILH--LARRIITPLVSGVVVMIIGLSLIQVGLTSIGGGYAAmADH-TFGAPKNLLLAGIVLALIIILNRQRN 217
                      *************************..8***********************************8888.************************** PP

                      TTTTTHHHHHHHHHHHHHHHHHHHTTSSHHHHS-SS-----------HH..H.HHHHTHHH.HHHHHHHHHHHHHHHHHHTS-TII...IIIHH CS
  Xan_ur_permease 180 glfsqlpiLigiiagwllalfmgivnlspevseapwfqlpsplkfgtplfnlgliltvlavalvavvesvGdiravakvvgrslkp...kpdlr 270
                      ++++  +++i+++ag+l+a+f+++++++ ++++++++++p+pl++g   ++++l+l +++v++++++e++Gdi+a+++v+++++++   +++l+
       CTQ30600.1 218 PYLRIASLVIAMAAGYLAAWFLDMLPANTAPTNSSLITVPTPLYYGLG-IDWSLLLPLMLVFMITSLETIGDITATSDVSEQPVSGplyMKRLK 310
                      ************************************************.9************************************9******* PP

                      HHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHTTS CS
  Xan_ur_permease 271 ralladGlatllsgllGalpvttyaeniGvvaltkvasrrvmvtagvilillglipklaallssIPepvlgGvllvvfgmiaasgvsnlqtvdl 364
                       ++la+Gl++++s +++++p++++++n+Gv++lt+vasr+v+++++++li+lgl+p+++ ++++IPepvlgG++lv+fg+iaasgv++++++ l
       CTQ30600.1 311 GGVLANGLNSFVSTVFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIAASGVRIVSREPL 404
                      ********************************************************************************************** PP

                      -SHHHHHHHHHHHHHHHH----- CS
  Xan_ur_permease 365 dsarnllivavslvlGlgvatvp 387
                      + +r++li+a+sl++Glgv+++p
       CTQ30600.1 405 N-RRAILIIALSLAVGLGVSQQP 426
                      *.*****************9987 PP

>> SprB  SprB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   1.7e-05     0.075       3      20 ..     327     344 ..     325     345 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.7e-05
        SprB   3 tttnvtCnggndGsItvt 20 
                 +t++++C+g n+G I++t
  CTQ30600.1 327 NTFPNSCFGQNNGVIQLT 344
                 799************998 PP

>> DUF3925  Protein of unknown function (DUF3925)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.9   0.00029       1.3      23      60 ..     132     169 ..     125     174 .. 0.79
   2 ?   -0.4   0.0       0.3   1.4e+03      17      32 ..     226     241 ..     220     248 .. 0.84
   3 ?   -0.7   0.1      0.38   1.7e+03      12      34 ..     349     370 ..     341     383 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00029
     DUF3925  23 lfvvGWvldvnGlflskyftlagmimlPlvGGivGlfi 60 
                 lf +  +     + ls+ + la  i+ Plv G+v + i
  CTQ30600.1 132 LFGTLMLASCTEMVLSRILHLARRIITPLVSGVVVMII 169
                 55555566677789*******************98876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.3
     DUF3925  17 vlymmllfvvGWvldv 32 
                 v+ m   +++ W+ld+
  CTQ30600.1 226 VIAMAAGYLAAWFLDM 241
                 778888999****997 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.38
     DUF3925  12 refyfvlymmllfvvGWvldvnG 34 
                 r   fv+ +ml  v G +  v G
  CTQ30600.1 349 RYVGFVVALML-IVLGLFPAVSG 370
                 55556665554.45565555544 PP

>> YtpI  YtpI-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.9     0.084   3.7e+02      53      79 ..     161     187 ..     128     191 .. 0.71
   2 ?    9.7   0.7   0.00021      0.93      53      80 ..     347     374 ..     332     376 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.084
        YtpI  53 lestvalvvgavflvlGlanlfaGira 79 
                  + +v +++g+ ++ +Gl ++  G+ a
  CTQ30600.1 161 VSGVVVMIIGLSLIQVGLTSIGGGYAA 187
                 455667777777888888777777765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00021
        YtpI  53 lestvalvvgavflvlGlanlfaGiray 80 
                  +  v++vv++ ++vlGl+ ++ G+ ++
  CTQ30600.1 347 ASRYVGFVVALMLIVLGLFPAVSGFVQH 374
                 456799******************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3558.72
//
Query:       CTQ30601.1  [L=571]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-22   78.2   4.6    1.2e-16   60.6   0.3    3.0  3  AsmA      AsmA family
      7e-05   22.6   7.6     0.0055   16.4   0.7    3.3  3  DUF2125   Uncharacterized protein conserved in bacteria (DUF2
    9.9e-05   22.0  10.8      0.001   18.7   0.2    4.8  5  AsmA_2    AsmA-like C-terminal region
     0.0045   16.4   0.0       0.26   10.6   0.0    2.6  1  DUF4097   Putative adhesin


Domain annotation for each model (and alignments):
>> AsmA  AsmA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0051        23       1      81 [.       1      77 [.       1     110 [. 0.78
   2 !   14.7   0.1   2.2e-06      0.01     405     492 ..     130     214 ..     107     234 .. 0.81
   3 !   60.6   0.3   2.8e-20   1.2e-16     252     555 ..     249     540 ..     242     555 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0051
        AsmA  1 MkkalkilllilivLlLLlvlliaiialfdpnn.ykptlqqkvkeatnrplaiegdigrsllPwptlsLsdiklaspegakk 81
                Mk  +k  l++l++LlL++   i   +l+++   +++   + +++ t+ + +++   ++ +   ++++L +++++ +  +++
  CTQ30601.1  1 MKFLGKLILWLLVALLLVI---IGAWFLLQTHWgARQASAW-LSNGTGWQVSFDEM-EHDFSSPLHVQLRNVTFGREGKPAT 77
                888999***********99...8778888877514555555.99999999999998.5555544599999999999886655 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2.2e-06
        AsmA 405 atkskaneqkasglsadkknkplkeerillgvwqeieadlsanidkvtyssllisdlkaklrlegGvlqLsrlkaglygGeleakgql 492
                 a +s+++ ++ s   + ++ +p+  e  +   +    a+++++++++t++++  s++ ++ ++++G + Ls l a +++G l ++++ 
  CTQ30601.1 130 AFNSPETGWALSAQRVTGGVSPWTPEAGNVLGK---TAQIQMSAGSMTLNGVEASNVLIQGKIDQGEVTLSTLGADVARGTLTGNAKR 214
                 456778888888888999999998888744444...459*******************************************999974 PP

  == domain 3  score: 60.6 bits;  conditional E-value: 2.8e-20
        AsmA 252 piyeinslklesnqlaldgtlitnlnlskedlrLkasglksilaalslkadeldslanqaeltgvnlprtpqaitlqelslsaktensqvsivLkn..l 348
                 p+ +i +l++  ++l+ +++++t l ls  +l+L + g++s+   ls++a e       +  + +n  ++p  i l ++s +++ + +++s++      
  CTQ30601.1 249 PSLQIGRLDITDARLQGPDWAVTDLDLSLRNLTLSHGGWQSEDGTLSMNASEFIYGSLHFFDPILNAEFSPRGIALRQFSSRWEGGMVRTSGNWLRagN 347
                 788999***********************************************9999999999****************************99643125 PP

        AsmA 349 tlnldklsvngkkiviksdinganqlpkaqarpklrgkLsspeLdldrlqpikaaiatkskaneqkasglsadkknkplkeerillgvwqeieadlsan 447
                 +l ld++++ g +     +    ++  +  + p++  +L+ ++    r ++i        +a  ++ + l+  +++++l ++   +gvw++   +  +n
  CTQ30601.1 348 ALVLDDTAFAGLEYTL--PA--NWKQLWMTPLPAWLQSLTLKKFSASRNLIIDVD-----PAFPWQITALDGYGGELQLVKNGS-WGVWNG---SATLN 433
                 6779********4443..33..3677899******99999999999999998888.....************************.******...999** PP

        AsmA 448 idkvtyssllisdlkaklrlegGvlqLsrlkaglygGeleakgqldlskksatvrlklnaknlplkrLladlskikkldGlldididltgsGnsvatli 546
                 ++ +t + + +   ++kl++    +++++l a  ++G l+a++ +  +    +v l+ + +++pl  L+a+  +  +++G ++++++++gs    a l 
  CTQ30601.1 434 AAAATFNRIDVRRPSLKLNATASTVNITELSAFTERGILQATAAVS-QLPQRQVNLSFSGRGVPLNILQAWGWPSLPISGDGNLQLTASGSVQADAPLK 531
                 ********************************************99.666669********************************************** PP

        AsmA 547 nnLnGqlkl 555
                    nGql++
  CTQ30601.1 532 PTVNGQLSA 540
                 ******975 PP

>> DUF2125  Uncharacterized protein conserved in bacteria (DUF2125)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.7   1.2e-06    0.0055      41     229 ..     123     305 ..     117     343 .. 0.60
   2 ?   -0.1   0.1      0.13   5.8e+02     100     236 ..     429     476 ..     403     509 .. 0.57
   3 !    8.2   0.1   0.00038       1.7     228     273 ..     514     560 ..     511     569 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.2e-06
     DUF2125  41 elrctdprladpstglawragrllavaqvynPrhliaefpgparltdraqgltlaanwsqaslraslegl...........erlslvlddlaltaaaga 128
                 +l ++++ +  p+tg+a++a r++  ++++ P    +  + +a+++    + +++ n     ++as ++             +l +++ + +lt  a +
  CTQ30601.1 123 RLMLRNMAFNSPETGWALSAQRVTGGVSPWTPEAGNVLGK-TAQIQMS--AGSMTLN----GVEASNVLIqgkidqgevtlSTLGADVARGTLTGNAKR 214
                 5899****************************98665433.4444322..3333333....22222222222331224333444444444444444444 PP

     DUF2125 129 agaallsaarlelhlrqapgepa.aagaldvalrldglpalasglaaalpad.adlplalealvldaallrpkpwpqrapalrrwqaagGtvelrrael 225
                  +  +++++ l+l+  + + +++ a    ++++ l+ +p l+ g     +a+ ++     +++v+d++l    ++++ + ++  wq   Gt+    +e+
  CTQ30601.1 215 SADGSWRVDNLQLNEIRLQSPASlA----EFFAPLTTVPSLQIGRLDITDARlQG----PDWAVTDLDL----SLRNLTLSHGGWQSEDGTLSMNASEF 301
                 4448999999999888887765433....99999999954444444444444333....4555555555....55777788999999999988544444 PP

     DUF2125 226 qwge 229
                   g 
  CTQ30601.1 302 IYGS 305
                 4443 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.13
     DUF2125 100 qaslrasleglerlslvlddlaltaaagaagaallsaarlelhlrqapgepaaagaldvalrldglpalasglaaalpadadlplalealvldaallrp 198
                  a+l a++   +r+++   +l+l+a a ++  ++lsa                                                              
  CTQ30601.1 429 SATLNAAAATFNRIDVRRPSLKLNATASTVNITELSA-------------------------------------------------------------- 465
                 4555555555555555555555555555555533333.............................................................. PP

     DUF2125 199 kpwpqrapalrrwqaagGtvelrraelqwgelrlkasG 236
                                                ++l+a+ 
  CTQ30601.1 466 ---------------------------FTERGILQATA 476
                 ...........................33333322222 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00038
     DUF2125 228 gelrlkasGtlgldaagrpdGeltlrvagle..alldaleqagllppn 273
                 g+l+l+asG+++ da + p+   +l++ ++e  ++ + +++ g ++p 
  CTQ30601.1 514 GNLQLTASGSVQADAPLKPTVNGQLSAVNMEkqQVAQIMRN-GEVSPA 560
                 899**************************972245555544.555544 PP

>> AsmA_2  AsmA-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.15   6.8e+02     118     160 ..      81     137 ..      41     144 .. 0.68
   2 ?    2.4   0.2     0.021        94       4      43 ..     183     222 ..     180     247 .. 0.71
   3 ?    0.6   0.1     0.074   3.3e+02       8      40 ..     261     292 ..     253     300 .. 0.73
   4 ?    1.9   0.0     0.031   1.4e+02      13      40 ..     320     347 ..     312     357 .. 0.83
   5 !   18.7   0.2   2.3e-07     0.001       5      98 ..     448     540 ..     444     556 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.15
      AsmA_2 118 k..............ltldfrdlfgeglafddikgtftienGvvttkdfklkgpaaa 160
                 k              l++d   l++++l+++  ++++ +   ++ + ++ +++p+ +
  CTQ30601.1  81 KtvdigfstrqfsdpLHADEIVLNDGTLNLSPHSADLPFAADRLMLRNMAFNSPETG 137
                 133334444556678899999999999999999999999999999999999998766 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.021
      AsmA_2   4 vsgklrlkdeglrldnlrlrspggklsgsgswstkggaar 43 
                 v  + ++++++++l  l +++  g+l+g++  s++g ++ 
  CTQ30601.1 183 VLIQGKIDQGEVTLSTLGADVARGTLTGNAKRSADGSWRV 222
                 5566778888899999999999999998777666554433 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.074
      AsmA_2   8 lrlkdeglrldnlrlrspggklsgsgswstkgg 40 
                 +rl++  + +++l l++ + +ls  g w++++g
  CTQ30601.1 261 ARLQGPDWAVTDLDLSLRNLTLSH-GGWQSEDG 292
                 788999999999999999999875.44555555 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.031
      AsmA_2  13 eglrldnlrlrspggklsgsgswstkgg 40 
                  g+ l+++++r+ gg +  sg+w   g+
  CTQ30601.1 320 RGIALRQFSSRWEGGMVRTSGNWLRAGN 347
                 57899******************98754 PP

  == domain 5  score: 18.7 bits;  conditional E-value: 2.3e-07
      AsmA_2   5 sgklrlkdeglrldnlrlrspggklsgsgswstkggaartnldlkldgvdlgallkrlglaevl.gGkgslelnlswqgaplspdlssLsGdlsl 98 
                 s+kl  ++ ++++++l++ +  g l++++++s+   ++++nl+++ +gv l+ +l+++g ++    G+g+l+l+ s+  + ++p+ ++ +G+ls+
  CTQ30601.1 448 SLKLNATASTVNITELSAFTERGILQATAAVSQLP-QRQVNLSFSGRGVPLN-ILQAWGWPSLPiSGDGNLQLTASGSVQADAPLKPTVNGQLSA 540
                 789999999************************64.4889999999998885.8999**999756***************************975 PP

>> DUF4097  Putative adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   5.8e-05      0.26     121     177 ..     155     213 ..      43     310 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.8e-05
     DUF4097 121 s.....aktltvksesGdvtiegseakklklqltsGdieleslsletldltsssGdltlsnt 177
                 +     +kt++++ + G +t++g+ea+++ +q   G+i+  +++l+tl + +  G lt +++
  CTQ30601.1 155 EagnvlGKTAQIQMSAGSMTLNGVEASNVLIQ---GKIDQGEVTLSTLGADVARGTLTGNAK 213
                 03333366666666666666666666666554...444444444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 4351.79
//
Query:       CTQ30602.1  [L=519]
Description: PTS system phosphotransferase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-58  196.2  29.8    8.4e-58  195.9  29.8    1.1  1  PTS_EIIC  Phosphotransferase system, EIIC
    5.2e-13   48.2   0.9    9.8e-13   47.4   0.9    1.5  1  PTS_EIIB  phosphotransferase system, EIIB
  ------ inclusion threshold ------
      0.013   15.7   3.7      0.014   15.6   0.3    2.8  3  YbjM      Putative inner membrane protein of Enterobacteriace
       0.15   12.6   0.0       0.15   12.6   0.0    3.4  4  DUF3681   Protein of unknown function (DUF3681)


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.9  29.8   1.9e-61   8.4e-58       2     323 ..      17     350 ..      16     351 .. 0.91

  Alignments for each domain:
  == domain 1  score: 195.9 bits;  conditional E-value: 1.9e-61
    PTS_EIIC   2 dgfmlpiplliagGillglgn.lpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaaisvl 99 
                 ++++ ++ +l++ G++l+l++ l+n    ++   ++ +++l++l ++l   ++  f+nL+llf++gi+yglak++k  ++l  ++++++f    a+ ++
  CTQ30602.1  17 RAMIGAVLFLPVIGLILALSSvLTN---PTL---IAETSFLHQLGQMLGDTFWPLFGNLGLLFCVGISYGLAKDKKTEVALVSVMCFIMFLG--ANHSW 107
                 799******************4444...233...334678888889*************************999999999*********999..88888 PP

    PTS_EIIC 100 llaagala.........sakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqggln 189
                 l+ + +la         ++++ +lg+ + ++gvf +ii g   a+++nk+++   i+LP +l +  g  ++   +t  v+++ ++++ +iwp++++g++
  CTQ30602.1 108 LEHTHGLAekingeyygTGQTQLLGFVVVDMGVFLGIILGCTIAWVHNKVSA---IELPGALSMYGGAKLTLVAMTP-VVIFYAIAFTWIWPFMTHGIS 202
                 888777778*******************************************...****************999999.99999**************** PP

    PTS_EIIC 190 alglllggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlyg.........agk........eaahiltgefvsvmfGgpgatla 271
                 al ++++++g  +gv+++gf+e +lip+GlHh++  pf +t +gg+l++ +q ++g         + +        +a +++++++ + +fG++ga la
  CTQ30602.1 203 ALTGFMKNAG-VAGVFVYGFFEKFLIPTGLHHFVWSPFQLTQIGGTLNVDGQVVSGtqaiflaymR-HpdltpvmnDALRFSQQGM-TTIFGLAGASLA 298
                 *99*******.99*******************************************6655555542.0577888855555555554.89********** PP

    PTS_EIIC 272 lyiaaflekkskqkkllgsaaltpflfGItepleFgfpfvlnlllfipalla 323
                  y++a++ekk + k +l+ a +t++l+GItep+eF+f+fv++ll +i+a+l+
  CTQ30602.1 299 FYHTAKPEKKAMAKAILLPAIITSMLTGITEPIEFTFLFVSPLLWVIHATLT 350
                 *************************************************997 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.9   2.2e-16   9.8e-13       2      34 .]     446     478 ..     445     478 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 2.2e-16
                 HHHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB   2 eIldalGGkdNIesvthCaTRLRltlkDaskvd 34 
                 +I+ +lGGk+NI sv++C TRLR+ ++D++ vd
  CTQ30602.1 446 DIIRGLGGKENILSVDNCFTRLRVAVRDMARVD 478
                 69****************************998 PP

>> YbjM  Putative inner membrane protein of Enterobacteriaceae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.3   3.1e-06     0.014      53     112 ..       8      74 ..       1      78 [. 0.79
   2 ?   -1.8   0.0      0.75   3.4e+03      10      27 ..      91     108 ..      84     122 .. 0.61
   3 ?   -2.0   0.1      0.86   3.8e+03      45      83 ..     315     351 ..     290     375 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.1e-06
        YbjM  53 llskekrllvpllGallaapvcllvlkl.......vlaseeslwqelayllSavFWcalGallvlll 112
                 +l++ ++  ++++Ga+l +pv+ l+l l       +l++e+s++++l  +l   FW  +G l++l+ 
  CTQ30602.1   8 ILENMQKFSRAMIGAVLFLPVIGLILALssvltnpTLIAETSFLHQLGQMLGDTFWPLFGNLGLLFC 74 
                 56777888899999999999999998884322222356789*********************99986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.75
        YbjM  10 lcfllftlvflsqklevs 27 
                 l +++  ++fl +++++ 
  CTQ30602.1  91 LVSVMCFIMFLGANHSWL 108
                 445555556666666655 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.86
        YbjM  45 llPGivaallskekrllvpllGallaapvcllvlklvla 83 
                 llP i++++l+  ++ ++  +  l   p+ ++++ +++a
  CTQ30602.1 315 LLPAIITSMLTGITEPIE--FTFLFVSPLLWVIHATLTA 351
                 566666666654322221..2224445555555555444 PP

>> DUF3681  Protein of unknown function (DUF3681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       3.1   1.4e+04       3      25 ..      13      35 ..      11      42 .. 0.60
   2 ?   -2.0   0.1       1.1   5.1e+03      76      89 ..     171     184 ..     107     189 .. 0.59
   3 ?   12.6   0.0   3.3e-05      0.15      14      88 ..     254     323 ..     247     328 .. 0.75
   4 ?    1.2   0.3      0.11     5e+02      23      53 ..     382     410 ..     369     412 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.1
     DUF3681  3 kklpraLiagGvvkaaaalllal 25
                +k  ra+i++ ++   + l+lal
  CTQ30602.1 13 QKFSRAMIGAVLFLPVIGLILAL 35
                56666666665555555555554 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.1
     DUF3681  76 Gktvlwvsvlplvl 89 
                 G ++ +v++ p+v+
  CTQ30602.1 171 GAKLTLVAMTPVVI 184
                 34444555555555 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 3.3e-05
     DUF3681  14 vvkaaaalllalfrspggvflrhgkallylYYgiLvavvvfGlaeasvgfWvsgdperrravGktvlwvsvlplv 88 
                 vv  + a++la +r p+   +  + a   l +     + +fGla as++f+ + +p +++a++k++l+ +++  +
  CTQ30602.1 254 VVSGTQAIFLAYMRHPDLTPV-MNDA---LRFSQQGMTTIFGLAGASLAFYHTAKP-EKKAMAKAILLPAIITSM 323
                 666677777777777743333.2233...3556666789****************9.999********9998765 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.11
     DUF3681  23 lalfrspggvflrhgkallylYYgiLvavvv 53 
                 + l+r pg v+   g + + +YY+i  + vv
  CTQ30602.1 382 VSLTRWPGYVLI--GIGQFAVYYVIFRTLVV 410
                 567899999998..7788999**99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4045.41
//
Query:       CTQ30603.1  [L=459]
Description: putative glycoside hydrolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-38  133.2   0.1    1.8e-38  132.7   0.1    1.2  1  Glyco_hydro_4C  Family 4 glycosyl hydrolase C-terminal domain
    1.5e-27   96.4   0.0    2.2e-27   95.8   0.0    1.3  1  Glyco_hydro_4   Family 4 glycosyl hydrolase
  ------ inclusion threshold ------
       0.06   13.8   0.6        6.4    7.2   0.1    2.5  2  FCD             FCD domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_4C  Family 4 glycosyl hydrolase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   0.1     3e-42   1.8e-38       1     208 []     192     436 ..     192     436 .. 0.86

  Alignments for each domain:
  == domain 1  score: 132.7 bits;  conditional E-value: 3e-42
                     EEEETTEEEEEEEECTTEEHHHHHHHHHHHHHHHHHCTGGGTSHHHHHHHH.HHSSEEECGGHHCTTSS.HCHHHH.SHHHHHHHHHHHHHHHHH CS
  Glyco_hydro_4C   1 vaGlNHlaWllkledkGeDlypelrelveedewleeiaekkaervridllr.rlgllpteysrhyaEYvpylkrea.peliekektraevvkeve 93 
                     ++GlNH++W+++++ +Ge+++++l +   ++e ++++a ++    + +l+r   + l +ey+++y     y+++ea +++  + +tr+e++++++
      CTQ30603.1 192 CYGLNHFSWFTHFTVRGEEVTERLIA---SPELYQKTAMQY---FSPELVRlCDNQLLNEYLYYY-----YYRDEAlKAIQGAGETRGEQIARIN 275
                     89************88********55...777777777765...455799977789*********.....***877555555566********** PP

                     HTTTTTHHH....HHHH...........SSCHTS-S.................................HHHHHHHHHHTS-EEEEEEEE-TTSS CS
  Glyco_hydro_4C  94 kelfeelek....ekle...........lekrsgey.................................avdiieaivtdkprrlvvnvpNnglI 140
                     +e+ e+l++       +           + +r+++y                                 a+di ea+ + +++r+vv ++Nng++
      CTQ30603.1 276 QEMREALRTvdarT--QpeaaftiwmqhYLRRENSYmqnesrqekfhtrepltlrqfieepdtggyagvALDILEAVNSTTTKRIVVSIQNNGTL 368
                     *********66550..14455666666633344444556666667899999999999999999999***************************** PP

                     TTS-TTSEEEEEEEEETTEEEEB--CS-HHHHHHCHHHHHHHHHHHHHHHHHTBHHHHHHHHHCSTT- CS
  Glyco_hydro_4C 141 pnLpddavVEvpclvdkngirpvavgelpeqlaallrtniaveeltveAalegdrelalqallldplv 208
                     + L +d+v+E++c  +++g++pv+  ++p++++ ++  ++++e+l+v A+l++d++la++al+++pl+
      CTQ30603.1 369 DFLRPDDVIEISCDLSRDGLKPVTPVKVPTAQKNMIACVKEYERLAVAAILQQDKSLAVRALMAHPLI 436
                     ******************************************************************96 PP

>> Glyco_hydro_4  Family 4 glycosyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.0   3.8e-31   2.2e-27       1     177 [.       2     177 ..       2     183 .. 0.93

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 3.8e-31
                    EEEEETTTSSSHHHHHHHHHHTTTTCTEEEEEEE-SSHHHHHHHHHHHHHHHHHCTTTCEEEEESSHHHHHTT-SEEEE---TTHHHHHHHHHHCC CS
  Glyco_hydro_4   1 kiviiGgGStifaklllgdlkkteelsvselaLvDideerldaiqtlakklveeagadlkieattdrkealkdadfVitairvGlekareidekip 96 
                    k+++ GgG    a l  ++  + +++  +e+  +D+  + l +  ++a+ + +   +d+++++ttd+  al+da+++it++rvG  ++r  de+i+
     CTQ30603.1   2 KLTVLGGGGVRSAFLAKSLAYNAHRIGLTEVVFLDNSADNLAIFGEIARYVFNTIRPDIQFSTTTDPVAALQDANYIITTLRVGGDESRIRDERIA 97 
                    67899999888888888899999************************************************************************* PP

                    HTTTTT-CTTSSSHHHHHHHHHHHHHHHHHHHHHHHHH-.TTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHHHHH CS
  Glyco_hydro_4  97 lryGieqtiqdtvgpggifrglrtipvlleIakdieelc.PdawvlnytNPaavvteallrlvpnikavglChsvigvkeel 177
                    l++   +  q+t g+gg + ++r+ip +l  ++ iee +  da + n+tNP + vtea+ +   + ++ g+C+ +  + +el
     CTQ30603.1  98 LEHNTLG--QETTGAGGFAMAMRSIPAILRYCRLIEEHAaEDAILFNFTNPSGLVTEAIIKSGFKRRVYGICDAPSELIREL 177
                    *******..**************************997616899****************99999999*****997665555 PP

>> FCD  FCD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0011       6.4      58     123 ..     233     302 ..     218     304 .. 0.76
   2 ?    4.2   0.1    0.0089        53     101     122 ..     412     433 ..     396     435 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0011
         FCD  58 alaeaagnpvlaelleelrarlrrlrrlals...sperleeslaeHraildAirar.dadaAraamrrHl 123
                  l+++++n++l e l  ++ r ++l +++ +   ++e ++++++e r+ l+ + ar +++aA +++ +H 
  CTQ30603.1 233 ELVRLCDNQLLNEYLYYYYYRDEALKAIQGAgetRGEQIARINQEMREALRTVDARtQPEAAFTIWMQHY 302
                 6899********9888888888876666666445888888888888888888877437888888888885 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0089
         FCD 101 raildAirardadaAraamrrH 122
                 r  ++Ai+++d   A++a+ +H
  CTQ30603.1 412 RLAVAAILQQDKSLAVRALMAH 433
                 45699**************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3552.49
//
Query:       CTQ30604.1  [L=240]
Description: Transcriptional regulator, RpiR family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-11   43.7   0.1    1.7e-10   40.7   0.0    2.2  2  HTH_6     Helix-turn-helix domain, rpiR family
    1.9e-07   31.0   0.0    4.3e-07   29.8   0.0    1.5  1  SIS       SIS domain
     0.0019   18.2   0.0        0.5   10.4   0.0    2.2  2  SIS_2     SIS domain
  ------ inclusion threshold ------
      0.028   14.3   0.0      0.056   13.3   0.0    1.5  1  MarR_2    MarR family
       0.16   11.9   0.0        1.4    8.9   0.0    2.2  2  MarR      MarR family


Domain annotation for each model (and alignments):
>> HTH_6  Helix-turn-helix domain, rpiR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   4.8e-14   1.7e-10      13      67 ..      11      65 ..       6      73 .. 0.93
   2 ?   -0.1   0.0      0.26   9.2e+02      25      49 ..     142     166 ..     139     168 .. 0.88

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 4.8e-14
                ---HHHHHHHHHHHH-S---TT--HHHHHHHTT--HHHHHHHH---S-SSHHHH- CS
       HTH_6 13 kltksekkiaeyilaspdkaielsikalAkaaavSeativrfakkLGfkGFselk 67
                kl+k e +++ +i+++p+++i+ +++a+A+++ +  +++vr+akkL f+G+ el 
  CTQ30604.1 11 KLSKTEMTVLRFIQNDPEQCIRQGVRAVAEQCYSNPSSLVRLAKKLKFSGWLELV 65
                89*************************************************9985 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.26
                 HHH-S---TT--HHHHHHHTT--HH CS
       HTH_6  25 ilaspdkaielsikalAkaaavSea 49 
                 il++++ a+  si  ++k   +S a
  CTQ30604.1 142 ILEQKNAACFDSIWIISKSGRSSSA 166
                 899**************99888765 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.2e-10   4.3e-07       5     108 ..     103     205 ..     101     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.2e-10
                 SSEEEEEESHHHHHHHHHHHHHHHHHHTSEEEE.EEHHHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEE CS
         SIS   5 akriyvlGaGtsyaiakelalkleeiggivvev.edaselkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlal 102
                 ++r+++ G+G s+ ia+++  k+  +g++++ +  +++e+  +   ++   d + +is sg++++ ++ ++ +  +  +++++T+   spla+ ad a+
  CTQ30604.1 103 QQRVLIHGSGFSQLIAQYIYNKFLVTGVNASLAlWPDYEILEQ--KNAACFDSIWIISKSGRSSSALNWVKALEGKEINLVCFTGDYQSPLAQAADTAF 199
                 679********************88888877542577776666..66777788999******************************************* PP

                 EEEEEC CS
         SIS 103 yinaep 108
                 +i+ + 
  CTQ30604.1 200 IIHDPQ 205
                 998665 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0038        14      34      58 ..     102     126 ..      91     136 .. 0.85
   2 !   10.4   0.0   0.00014       0.5      94     138 .]     141     185 ..     137     185 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0038
                 TT--EEEEESGGGHHHHHHTSSSTT CS
       SIS_2  34 nggkvlvfGsGhSaalaeelaarag 58 
                 + ++vl+ GsG S+++a+++++++ 
  CTQ30604.1 102 AQQRVLIHGSGFSQLIAQYIYNKFL 126
                 457899***************9875 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00014
                 HHHHHTT--TT-EEEEE-SS--SHHHHHHHHHHHHHT-EEEEEE- CS
       SIS_2  94 qilrlvrlkpgDvLlviSnsGnnavvveaaeaakergmkviAlts 138
                 +il++ +++  D +++iS+sG++ ++++ ++a   ++++++ +t+
  CTQ30604.1 141 EILEQKNAACFDSIWIISKSGRSSSALNWVKALEGKEINLVCFTG 185
                 68899999999*******************999999999998886 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.6e-05     0.056       4      53 ..      13      64 ..      10      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.6e-05
                -HHHHHHHHHHHCTTTS..EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEE CS
      MarR_2  4 tpaqarvLaaLgrrpgr..dltvgelarrlglsksavsrilkrLvaaGLver 53
                + ++  vL ++ + p++  +  v+++a+ +   +s++ r+ k+L   G++e 
  CTQ30604.1 13 SKTEMTVLRFIQNDPEQciRQGVRAVAEQCYSNPSSLVRLAKKLKFSGWLEL 64
                568999*********9988779***********************9999985 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0004       1.4       1      48 [.      12      63 ..      12      63 .. 0.87
   2 ?    0.1   0.0      0.21   7.6e+02      31      45 ..     163     177 ..     155     178 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0004
                --HHHHHHHHHHHHSTTEEHH....HHHHHHTS-HHHHHHHHHHHHHTTSEE CS
        MarR  1 ltltqfviLrilyeqgplsvs....eLakklgvskstvtrvldrLekkGlie 48
                l+ t++ +Lr + + +++ +       a++ + ++s++ r++++L   G++e
  CTQ30604.1 12 LSKTEMTVLRFIQNDPEQCIRqgvrAVAEQCYSNPSSLVRLAKKLKFSGWLE 63
                68899999999999998555555889*******************9999986 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHTT CS
        MarR  31 kstvtrvldrLekkG 45 
                 +s++ +++++Le k+
  CTQ30604.1 163 SSSALNWVKALEGKE 177
                 4555689*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1793.08
//
Query:       CTQ30605.1  [L=772]
Description: putative alpha-glucosidase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.8e-122  407.8   3.0   9.2e-122  407.4   3.0    1.1  1  Glyco_hydro_31   Glycosyl hydrolases family 31
    4.6e-17   62.1   0.3    3.6e-16   59.2   0.1    2.5  2  Gal_mutarotas_2  Galactose mutarotase-like


Domain annotation for each model (and alignments):
>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  407.4   3.0    1e-125  9.2e-122       1     439 [.     240     668 ..     240     669 .. 0.92

  Alignments for each domain:
  == domain 1  score: 407.4 bits;  conditional E-value: 1e-125
                     EEEE-SSHHHHHHHHHHHH-------GGGGSEEEE-TT...--SHHHHHHHHHHHHHTT--EEEEEESCGGSB..TTCCTB-.TTTSS-HHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31   1 yvflGptpkevvkqyteltGrpalpPrwalGfhqsryg...ykdeeeveevvdkfreagiPldvivlDidymd..krkdftwdkerFpdpkemvd 90 
                     +v+ Gptpk v+++yt++tGrpalpP w++G+++++     y de++v++++d + e+++Pl v+++D+ +m+  +++df+wd+ +Fpdp++m++
      CTQ30605.1 240 FVIDGPTPKAVLNRYTQFTGRPALPPAWSFGLWLTTSFttnY-DEATVNSFIDGMAERHLPLHVFHFDCFWMKafQWCDFEWDPLTFPDPEGMIK 333
                     8999*****************************998776545.******************************99999***************** PP

                     HHHHTT-EEEEEE-SEE.E.-TTSHHHHHHHHTTSBECCCCCS..TCECTSSEEEEB-TTSHHHHHHHHHHHHHHHCTCT--EEEE-STTTB.SC CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31  91 elhekgvklvvivdpaiskqeeeyeafdegkekgvflknkdgs..ykgkwpgstafpDftnpearewwkkelkkflldlgvdglwiDmnepsnfe 183
                     +l++kg+k++v+++p+i    + +++f+e+kekg++lk++dgs   ++kw+   a++Dftnpear+w++++l k l+++gvd++++D++e     
      CTQ30605.1 334 RLKAKGLKVCVWINPYI---GQRSPVFKELKEKGYLLKRPDGSlwQWDKWQPGLAIYDFTNPEARQWYADKL-KGLVAMGVDCFKTDFGERIP-- 422
                     *****************...5568*******************855555877789**************998.56789************542.. PP

                     CCCHHHHCCCTSCETTCCHHHHCCCHHHHHHHHHHHHHHHHTTTST-EEEESSEETTGGGCTEEE--S-BSSHHHHHHHHHHHHHHHTTT--SEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 184 egsdseekeaketkaagshydvhnlygllmakatyeglkekkpkkrpfiltRstfaGsqryaahWsGdnassWeslresipallsfslsGvpfwg 278
                             ++ ++ + +  +++hn y++ +++ + + lke+  +++++++ Rs+ +G+q++++hW Gd+++++es++es++++ls+++sG+ fw+
      CTQ30605.1 423 --------TDVQWFDGSDPQKMHNHYAFIYNELVWKVLKETVGEQEAVLFARSASVGAQQFPVHWGGDCYANYESMAESLRGGLSIGMSGFGFWS 509
                     ........2222333444789************************************************************************** PP

                     EECT-SGHC.HHHHHHHHHHHHTTSSSEEE--STTSS--SHHHHCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH---SEE-HHHH-TT-CCCC CS
                     xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 279 aDigGFent.teelyaRWvqlGafsPffrnHsskdakrqepwafgeeveeaarkaielRyrLlPylYtlfyeahetglpvvrplflefpedektf 372
                     +DigGFent  + +y RW+++G++s+++r+H+s  ++++ pwa+++e  +++r++++l+ r++PylY ++  a+e g+p++r+++lefp+d+++ 
      CTQ30605.1 510 HDIGGFENTaPAHVYKRWCAFGLLSSHSRLHGS--KSYRVPWAYDDESCDVVRHFTQLKCRMMPYLYRQAALANECGTPMLRAMMLEFPDDPACD 602
                     ******977467********************9..899********************************************************* PP

                     C--S-EEETTTEEE----STT-SEEEEEE-SSEEEETTT--EEESSEEEEEE--TTSS-EEEETTEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 373 diddqfmfGdsLLvaPvleeeatsvevyLPggkWydfwtgekyeggqtveltapldeiplfvraGaI 439
                      +d+q+m+Gds LvaPv++e a +v++yLP+g W+ +w+++++ g++ ++ +++  ++p++vr+++ 
      CTQ30605.1 603 YLDRQYMLGDSVLVAPVFSE-AGEVQFYLPEGHWTHLWHNDELPGSRWHKQHHDALSLPVYVRDNSL 668
                     ******************77.89*******99*************664333322235******9986 PP

>> Gal_mutarotas_2  Galactose mutarotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.21   1.9e+03       2      27 ..      95     121 ..      95     126 .. 0.89
   2 !   59.2   0.1   4.1e-20   3.6e-16       1      65 [.     159     218 ..     159     219 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.21
                      -EEEEEES.-SS-SS-TTEEEEE---- CS
  Gal_mutarotas_2   2 ehvyGlGE.kagplnlrgtryrlwntd 27 
                      e+  G+ E k+g+l+ r t+ ++w +d
       CTQ30605.1  95 ENTAGFAElKSGSLSVRVTKGEFWGLD 121
                      5678999*99**********9999887 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 4.1e-20
                      T-EEEEEES-SS-SS-TTEEEEE-----TS-HCC.CTS-SCEEEEEEEETCEEEEEE--SSSEEE CS
  Gal_mutarotas_2   1 dehvyGlGEkagplnlrgtryrlwntdafgyeaessdplYgsiPfmislsegyGvfvdnpaetwf 65 
                      +e vyGlGE+++ l ++g+ ++ wn+d       s++++Y++iPf+++ ++gyGv+v++p +++f
       CTQ30605.1 159 GETVYGLGERFTALVRNGQTVETWNEDGGT----STEQSYKNIPFYLT-NRGYGVLVNHPQRVSF 218
                      589*************************86....5669**********.*************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5369.09
//
Query:       CTQ30606.1  [L=464]
Description: putative transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.3e-105  351.0  36.0   8.6e-105  350.7  36.0    1.0  1  MFS_2     MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.7  36.0  4.8e-109  8.6e-105       1     423 [.      13     427 ..      13     431 .. 0.99

  Alignments for each domain:
  == domain 1  score: 350.7 bits;  conditional E-value: 4.8e-109
       MFS_2   1 syglgalaanilsvllatylliFytdvlglsaalvglvllvarlvDaitDpivGtlidktstrwGrrrPwlllsaiilavsiillftppelsqsakfiw 99 
                 +yg+g++a +i+   + +y+++Fytd++g++a +vg+++l+ar +Dai+Dp +G l+d+t+ rwG++rPw+l++ai++++ ++l +++p+ls  +k+i+
  CTQ30606.1  13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFRPWILFGAIPFGLVCVLAYSSPDLSHNGKLIY 111
                 6************************************************************************************************** PP

       MFS_2 100 llvtyillrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkerve 198
                 ++vty+ll +lyt+++ipy++l+ v+t+++++R sl+s+r++l+++gg+l ++l+++lv + gg ++++ g+   +++ +++++l+  +++++tkerve
  CTQ30606.1 112 AAVTYTLLTLLYTVVNIPYCALGGVITDNPTQRISLQSWRFVLATAGGMLSTVLMMPLVNFIGG-EDKALGFQGGIAVLSVIAFLMLAFCFFTTKERVE 209
                 ***************************************************************9.********************************99 PP

       MFS_2 199 mrkkekteqkeklslleqlkevfrnraflillllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgal 297
                 +        ++++s++e+l+++ rn++++++ +l +l++la+ v+ g+++Yy t ++g+++ +++fl++  +++l+g++l++pl+ + +k  ++ +  +
  CTQ30606.1 210 A-------PPSSTSMREDLRDIWRNDQWRVVGVLTILNILAVCVRGGAMMYYTTWIMGSAALFTAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTNA 301
                 8.......9****************************************************************************************** PP

       MFS_2 298 ltivllvlvlllqpsnlllflvllviagfgvgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsafgyrakasvqspq 396
                 l++vl+v +++++    ++++v+ +++g+  ++ + + w m++d+vDyge+ +Gkr +g+ fa ++f+ kl+ ++g++++g++L+  gy+a+a +q+++
  CTQ30606.1 302 LLAVLSVAMFFVPMDAEITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSA 400
                 ************99999********************************************************************************** PP

       MFS_2 397 vvlalrllyavlpavlllvallllvry 423
                 +++++  l++++pav++l+++++  ry
  CTQ30606.1 401 TLTIIIALFTLVPAVCYLLSAVIAKRY 427
                 ***********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3168.32
//
Query:       CTQ30607.1  [L=155]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-34  116.5   0.0    9.9e-34  116.3   0.0    1.0  1  DUF3237   Protein of unknown function (DUF3237)


Domain annotation for each model (and alignments):
>> DUF3237  Protein of unknown function (DUF3237)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.0   5.5e-38   9.9e-34       1     149 []       3     154 ..       3     154 .. 0.94

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 5.5e-38
                 --EEEEEEEEEEE---EEEEEET..EEEEEEEEEEEEEESTT--EEE-ST-EEEEEE-TTS-EEEEEEEEEEETTS-EEEEEEEEEEE--GGGHHHHHH CS
     DUF3237   1 Pslepaftlevkleapvpigegp..gkrnivpitgGtikgprldgevlpgGaDwiridpggtarldaryvlktddgaliyirytGvvtldeevlavlgg 97 
                 P+l+++f++++++++p+ ++++p  gkr+++pi+gG+++g +l+g vlpgG D + i+p+gt+rl ary l+  +g  +y++++G+++++ ++ ++l  
  CTQ30607.1   3 PELRHCFSITIQVDKPIIVSRSPqtGKRQLIPIVGGSVSG-QLRGHVLPGGVDSQIIEPDGTCRLSARYALQVAEG-TVYVENNGIRRVPAQYHDQLFA 99 
                 89*******************9999***************.5*********************************9.79*****************998 PP

                 T-.....---GGG-EEEEEEEEEESSGGGGGGGSS-EEEEEEEESSEEEEEEEEE CS
     DUF3237  98 gekk...esspteygfrthptfetgdekykwLnnavfvGsgrfrvegveykvyev 149
                 ++     +  p+ ++frt+ptfe++++ ++wL+++++++ g + ++gv+ ++y+v
  CTQ30607.1 100 DDMRffsDIPPEAIYFRTVPTFEVDAPALSWLTTSLLICAGGRTQDGVMLDFYQV 154
                 5533554555899****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1220.70
//
Query:       CTQ30608.1  [L=335]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-21   76.5   0.2    6.5e-21   75.8   0.2    1.3  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    4.7e-11   42.8   0.0    1.4e-10   41.3   0.0    1.7  2  ADH_zinc_N    Zinc-binding dehydrogenase
    2.7e-06   27.2   0.0    5.4e-06   26.2   0.0    1.5  1  ADH_N         Alcohol dehydrogenase GroES-like domain
     0.0048   16.4   0.1     0.0075   15.8   0.1    1.3  1  Epimerase     NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.056   13.7   0.0       0.11   12.7   0.0    1.5  1  TrkA_N        TrkA-N domain
       0.09   12.9   0.1       0.24   11.5   0.0    1.7  2  DapB_N        Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.2   2.2e-24   6.5e-21       2     133 .]     193     332 ..     192     332 .. 0.91

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 2.2e-24
                   T-SEEEETTSTTHH..HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.......-HHHH CS
  ADH_zinc_N_2   2 GAdevidyrtedfe..aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas......aqadil 90 
                   GA++vid+ ++ +   a +g  +v +v  ++++e+++ a++++l+++G+l  i +   +++l  +++k+k+ s+++ef+f+++++      aq+++l
    CTQ30608.1 193 GAHHVIDHSKPLADelARIGITSVTHVASLTNTEQHFNALINALAPQGKLALIDD---PETLDVVPLKAKSLSLHWEFMFTRSMFetddmiAQHQLL 286
                   9******9987777798888899*********99998*******888***99997...4788888888999*********99999************ PP

                   HHHHHHHHHHH----EEEEEE...GGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  91 eelaalieeGklrpvvdrvfp...leeaaeAhrylesgrarGKiVl 133
                   +++aali+ ++++++++++++    +++++Ahr+le+gra+GKiVl
    CTQ30608.1 287 TRVAALIDNHTIETTLGEHYGaitAANLQKAHRQLETGRAVGKIVL 332
                   *******************997667779*****************8 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.98   2.9e+03      64      91 ..      65      93 ..      48     117 .. 0.76
   2 !   41.3   0.0   4.6e-14   1.4e-10       1     109 [.     159     263 ..     159     285 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.98
                ESSCSHHHHHHHHHCEEEEEEEEECSC.T CS
  ADH_zinc_N 64 ecvGsgatleaalkllkpgGrlvvvGg.g 91
                ++vG+ +++ + ++l +pg  + + G+ g
  CTQ30608.1 65 DAVGVVQSVGEEVTLFAPGDEVWYAGAlG 93
                78888899999999999998888888753 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 4.6e-14
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeeefd 98 
                 gvG+++ qlA  l a +vi+++s +e  + +++ Ga++vi++++  l ++++++     v  v   +++++ ++a +++l+p+G+l+++    ++e++d
  CTQ30608.1 159 GVGSILTQLASKLTAmTVIGTASRPESQQWVREAGAHHVIDHSK-PLADELARIG-ITSVTHVASLTNTEQHFNALINALAPQGKLALID---DPETLD 252
                 9*****************************************77.8999999999.66****************************9986...555566 PP

                 HHHHHHTT-EE CS
  ADH_zinc_N  99 lrnlllkeksi 109
                 + +l +k++s+
  CTQ30608.1 253 VVPLKAKSLSL 263
                 66666666665 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.8e-09   5.4e-06       3      62 ..      33      89 ..      31     112 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.8e-09
                EEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE- CS
       ADH_N  3 evlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvve 62
                ++l+ vka +++  D ++  g   ++  +p +lG ++vG+v++vg+ev+ ++ Gd+V   
  CTQ30608.1 33 DLLVAVKAISVNPVDTKVRAG---FQGDTPRVLGWDAVGVVQSVGEEVTLFAPGDEVWYA 89
                689*****************9...9********************************875 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.5e-06    0.0075       2      77 ..     152     241 ..     151     251 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.5e-06
                 EEETTTSHHHHHHHHHHHHCT.SEEEEEES-STTTTCHHCHHC............EEEE--TT-HHHHHHHHHHH.T-SEEEE--S---H CS
   Epimerase   2 lVtGatGfiGsalvkallekg.yevigldrlssasntarledl............elveldltdrsalerlfkee.qpdavihlAavggv 77 
                 l++Ga+G +Gs l++   + +  +vig +++++++++ r++ +            el ++ +t  + ++ l ++e +++a i++ a +g 
  CTQ30608.1 152 LIVGAAGGVGSILTQLASKLTaMTVIGTASRPESQQWVREAGAhhvidhskpladELARIGITSVTHVASLTNTEqHFNALINALAPQGK 241
                 8********************677*************99998888899999999988888888888888888888788888888774444 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.8e-05      0.11       6      83 ..     157     237 ..     151     257 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.8e-05
                 -SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSE.EEES-TTSHHHHHHTTGGGESEEEE-SSSH.HHHHHHHHHH CS
      TrkA_N   6 lGrvGrslaeeLse.ggkdvvvidkdeerveelreegle.vvvgdatdeevLeeagiekadaviaatgdd.eanilavlla 83 
                 +G vG+ l++  s+   + v++  +++e  + +re g++ v+ ++    + L+++gi ++  v  +t+    +n+l+ +la
  CTQ30608.1 157 AGGVGSILTQLASKlTAMTVIGTASRPESQQWVREAGAHhVIDHSKPLADELARIGITSVTHVASLTNTEqHFNALINALA 237
                 56677666666666555569999999999********55488899999*******************97767888776665 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.3   1.3e+04       6      14 ..      89      97 ..      86     101 .. 0.83
   2 ?   11.5   0.0   7.9e-05      0.24       3      75 ..     151     236 ..     150     246 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.3
                ETTTSHHHH CS
      DapB_N  6 vGasGrmGk 14
                +Ga Gr G+
  CTQ30608.1 89 AGALGRAGS 97
                7999*9997 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.9e-05
                 EEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHH.............HHSSSS--S-BEBSSHHHHHHH-SEEEE-S CS
      DapB_N   3 vavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdag.............ellglgklgvavtddleevlekadvliDFT 75 
                 +++vGa+G +G+ +++++++ + +++ +  +r+es+   ++ag             el+ +g ++v+  ++l+++ ++++ li   
  CTQ30608.1 151 LLIVGAAGGVGSILTQLASKLTAMTVIGTASRPESQQWVREAGahhvidhskpladELARIGITSVTHVASLTNTEQHFNALINAL 236
                 579*******************************9999899996666666666666666666666666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2611.53
//
Query:       CTQ30609.1  [L=96]
Description: Antibiotic biosynthesis monooxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-18   64.1   0.0    1.1e-17   63.9   0.0    1.1  1  ABM       Antibiotic biosynthesis monooxygenase
  ------ inclusion threshold ------
      0.081   12.5   0.0      0.096   12.3   0.0    1.1  1  CDH       CDP-diacylglycerol pyrophosphatase


Domain annotation for each model (and alignments):
>> ABM  Antibiotic biosynthesis monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   1.2e-21   1.1e-17       1      76 [.       1      75 [.       1      77 [. 0.97

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 1.2e-21
                CEEEEEEEEESTTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEETSTTEEEEEEEESSHHHHHHHHTSHHHHHHH CS
         ABM  1 mviviaeirvkpgqaeafldafaeavesllaeepGclgyellrstedpdevvvieeWeseaaleahlksphfkaah 76
                m+ +ia +++kpgq +a+++a+++++ ++ ++epG+l+y+l++ +++pd++++ e W+ ++al+ah++ p+f+a++
  CTQ30609.1  1 MISLIAVLKAKPGQTDALRQALQALLLPT-RQEPGNLDYALFQLRDAPDTFYMREAWQGQDALDAHVAMPYFQAFM 75
                999************************9*.6*******************************************97 PP

>> CDH  CDP-diacylglycerol pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.1e-05     0.096      40      86 ..      18      67 ..       5      76 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.1e-05
         CDH 40 rngplqyLliPtarisGiespalle.petpn..yfaaAwaarklvseklg 86
                 +++lq Ll+Pt++  G  + al + +++p+  y+++Aw+ ++++++++ 
  CTQ30609.1 18 LRQALQALLLPTRQEPGNLDYALFQlRDAPDtfYMREAWQGQDALDAHVA 67
                57889************6665544314444433889******99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.21s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 788.76
//
Query:       CTQ30610.1  [L=232]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-29   99.6   0.3    1.1e-28   99.1   0.3    1.3  1  HTH_46    Winged helix-turn-helix DNA binding
     0.0035   17.7   0.0     0.0072   16.6   0.0    1.4  1  Rrf2      Transcriptional regulator
      0.008   16.0   0.1      0.014   15.2   0.1    1.5  1  MarR_2    MarR family
  ------ inclusion threshold ------
      0.022   14.7   0.0      0.046   13.7   0.0    1.6  1  HTH_36    Helix-turn-helix domain
      0.029   13.9   0.3      0.053   13.1   0.3    1.4  1  HTH_24    Winged helix-turn-helix DNA-binding
       0.13   12.1   0.0       0.27   11.1   0.0    1.4  1  TrmB      Sugar-specific transcriptional regulator TrmB


Domain annotation for each model (and alignments):
>> HTH_46  Winged helix-turn-helix DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.3   3.5e-32   1.1e-28       1      67 [.     162     229 ..     162     230 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 3.5e-32
      HTH_46   1 sYeliralLleLielpeelreninvlkyIqkrtnLSrSsimkvLseLkkggyIeierGkLvki.nkLP 67 
                 sY ++r+lL+eL+++pe +r++invl++Iq+rtnLSrS+im++LseL+kggyI+++rG+L +i + LP
  CTQ30610.1 162 SYLMVRTLLTELADYPEAYRRQINVLSFIQRRTNLSRSRIMSILSELRKGGYITVHRGVLRTIaHPLP 229
                 8**************************************************************77788 PP

>> Rrf2  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.4e-06    0.0072      14      61 ..     170     220 ..     163     221 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.4e-06
                 HHHHHHSSTCC-...B-HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETTT CS
        Rrf2  14 llyLakeeeeep...vsseeiaerqnispsylekilakLrkaglvksvrGk 61 
                 l++La  +e        ++ i +r+n+s+s +  il++Lrk g++++ rG+
  CTQ30610.1 170 LTELADYPEAYRrqiNVLSFIQRRTNLSRSRIMSILSELRKGGYITVHRGV 220
                 56666655554422134567889***************************6 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   4.9e-06     0.014       8      55 ..     167     218 ..     159     223 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.9e-06
                 HHHHHHHHCTTTS.....EEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEE CS
      MarR_2   8 arvLaaLgrrpgr.....dltvgelarrlglsksavsrilkrLvaaGLverrp 55 
                 + +L +L++ p+      +   + + rr++ls+s++  il +L + G+++  +
  CTQ30610.1 167 RTLLTELADYPEAyrrqiN-VLSFIQRRTNLSRSRIMSILSELRKGGYITVHR 218
                 6677888888877775332.778899***********************8765 PP

>> HTH_36  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.5e-05     0.046      29      55 .]     188     214 ..     165     214 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
      HTH_36  29 etlakrlglsknTvsraikeLeqlGyi 55 
                 + +++r++ls++ +++++ eL++ Gyi
  CTQ30610.1 188 SFIQRRTNLSRSRIMSILSELRKGGYI 214
                 789***********************8 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.3   1.8e-05     0.053      23      48 .]     190     215 ..     190     215 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
      HTH_24  23 LAerlglSpstvnrrlkrLeeeGlIk 48 
                 + +r++lS+s +   l +L + G+I+
  CTQ30610.1 190 IQRRTNLSRSRIMSILSELRKGGYIT 215
                 679**********************6 PP

>> TrmB  Sugar-specific transcriptional regulator TrmB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     9e-05      0.27      28      57 ..     190     219 ..     186     230 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9e-05
                 HCCCTTSSCHCHHHHHHHHHHCTSEEEESS CS
        TrmB  28 iaeelgvprskvYevLrsLedkGlVerekg 57 
                 i ++++++rs++ ++L++L + G++++ +g
  CTQ30610.1 190 IQRRTNLSRSRIMSILSELRKGGYITVHRG 219
                 7899*********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1771.52
//
Query:       CTQ30611.1  [L=349]
Description: putative oxidoreductase, Zn-dependent and NAD(P)-binding [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-26   92.0   4.9      4e-26   91.0   4.9    1.5  1  ADH_N           Alcohol dehydrogenase GroES-like domain
    1.4e-23   83.3   0.0    2.8e-23   82.3   0.0    1.5  1  ADH_zinc_N      Zinc-binding dehydrogenase
    7.2e-07   28.7   0.2    1.4e-06   27.8   0.2    1.4  1  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    4.4e-05   24.5   0.0    8.4e-05   23.6   0.0    1.5  1  ADH_zinc_N_2    Zinc-binding dehydrogenase
    4.8e-05   22.8   0.0    7.7e-05   22.1   0.0    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
     0.0029   17.8   0.5      0.006   16.8   0.5    1.5  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
     0.0061   15.3   0.0     0.0086   14.8   0.0    1.1  1  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   4.9   1.6e-29     4e-26       2     108 ..      28     142 ..      27     143 .. 0.94

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 1.6e-29
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTS........S CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvs........l 91 
                 ++v i ++++g+C+sDlh ++  ++  + +p+++GHEivG v +vg++v++++vGd V v +++  c++C++C eg en+C+++ l+  +        +
  CTQ30611.1  28 QDVQIAIAYCGVCHSDLHQARS-EWAGTLYPCVPGHEIVGRVTAVGNAVSRYAVGDLVGVGCMVDsCQQCEECAEGLENYCDHMVLTYNGptqdapghT 125
                 79*******************9.8************************************999988***************988877777888899999 PP

                 -SSSBSEEEECGGGEEE CS
       ADH_N  92 dGgfaeyvvvpekklvk 108
                  Gg+++++vv+e+++++
  CTQ30611.1 126 LGGYSQQIVVNERYVLR 142
                 *************9986 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.0   1.1e-26   2.8e-23       1     129 [.     185     308 ..     185     309 .. 0.93

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 1.1e-26
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.EE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.fd 98 
                 g+G+++++lA+a+Ga+v+a   se+k+  a+ lGad v+ ++    +++++++   + +d+++++v++++ l+a ++llk++G++++vG++  + +   
  CTQ30611.1 185 GLGHMGIKLAHAMGAHVVAFTTSESKRNAARALGADDVVVSR---NEDEMAAHV--KSFDFILNTVAAPHNLDAFTTLLKRDGTMTLVGAPATPHPsPE 278
                 89***************************************4...478888888..59********************************777666699 PP

                 HHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  99 lrnlllkeksilGsllgslreefkealdlla 129
                 ++nl+++++si Gs+ g+   e +e+ld++a
  CTQ30611.1 279 VFNLIFRRRSIAGSMIGG-IPETQEMLDFCA 308
                 ******************.899999999976 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.2   5.3e-10   1.4e-06      30     102 ..     177     248 ..     170     258 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 5.3e-10
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE---BT CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtvlip 102
                  kv v+G G  G   i+ a+++ga+V+++ +++++++  ++lga  v v++++e+++a +vk+ d +  tv+ p
   CTQ30611.1 177 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSESKRNAARALGADDV-VVSRNEDEMAAHVKSFDFILNTVAAP 248
                  799*****************************************66.5688999***************9877 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.3e-08   8.4e-05       1     126 [.     217     335 ..     217     342 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 3.3e-08
                   TT-SEEEETT.STTHHHHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHH CS
  ADH_zinc_N_2   1 lGAdevidyr.tedfeaatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaal 96 
                   lGAd v+ +r +++++a++  +++D +l+tv+ ++ l+a  ++l+  G++  +g+p ++   +++ ++   r++++   +    +   +  +e++++
    CTQ30611.1 217 LGADDVVVSRnEDEMAAHV--KSFDFILNTVAAPHNLDAFTTLLKRDGTMTLVGAP-ATPHPSPEVFNLIFRRRSIAGSM--IGG-IPE-TQEMLDF 306
                   8******999788887776..77*********888879999999666***888875.44445555555555555544443..555.555.7999999 PP

                   HHHHH----EEEEEEGGGHHHHHHHHHSS- CS
  ADH_zinc_N_2  97 ieeGklrpvvdrvfpleeaaeAhrylesgr 126
                   ++e+ +   ++     +e++eA++++ +g 
    CTQ30611.1 307 CAEHGIVADIE-LIRGDEINEAWERMVKGD 335
                   99998887776.688899999999887775 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0     3e-08   7.7e-05      36      80 ..     175     219 ..     165     251 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3e-08
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv 80 
                   gk+vG++G+G +G+  +k+++a+g++v+a+ +s++k++++++lg+
    CTQ30611.1 175 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSESKRNAARALGA 219
                   89*******************************998875555544 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.5   2.3e-06     0.006       2      74 ..     181     256 ..     177     269 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.3e-06
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHC...SEEEE-SSSHHHHHHHHH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasl...dvvitmvkagkavdevie 74 
                    +g+ GlG MG ++a  + ++    +  + +++++++l a+ +++  +  e++a++   d+++  v a ++ d++++
     CTQ30611.1 181 VGIGGLGHMGIKLAHAMGAHVVAFTTSESKRNAARALGADDVVVSRNEDEMAAHVksfDFILNTVAAPHNLDAFTT 256
                    4555777788777777755555555555555555555555577777777777766777*********999998765 PP

>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.4e-06    0.0086     272     344 ..     175     239 ..     159     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.4e-06
                     T-EEEEECSSHHHHHHHHHHHHHT-EEEEEEESSS-HHHHHHHHHHS.TT.SEEEES.CHHHHHHHHHHHT-S CS
  Oxidored_nitro 272 gkrvaiygdpdrvvalarllkelGmevvaagtetahrddeerlkaeleegepeviddadleeleelikelkpd 344
                     gk+v ++g + + +  ++l + +G++vva  t++++r+    l a      ++v++  +++e+++ +k    d
      CTQ30611.1 175 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSESKRNAARALGA------DDVVVSRNEDEMAAHVKS--FD 239
                     9********************************998886644444......578888799999987765..44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2623.78
//
Query:       CTQ30612.1  [L=317]
Description: Transcriptional regulator, AraC family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-20   72.8   1.0    3.9e-20   71.9   1.0    1.5  1  HTH_18     Helix-turn-helix domain
    2.6e-16   59.3   0.0    8.3e-07   29.0   0.0    2.7  2  HTH_AraC   Bacterial regulatory helix-turn-helix proteins, Ar
    2.1e-08   34.1   0.0    2.9e-08   33.7   0.0    1.3  1  DJ-1_PfpI  DJ-1/PfpI family
  ------ inclusion threshold ------
      0.082   12.5   0.0       0.11   12.0   0.0    1.1  1  Spem1      Spermatid maturation protein 1


Domain annotation for each model (and alignments):
>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   1.0   8.8e-24   3.9e-20       1      80 [.     233     311 ..     233     312 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 8.8e-24
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 la+ +++srrtL+r+f r +g++ +++l++ Rl+r   lL e+ +l+v ++A+a+G+ ++ + ++ f+++fg++P+e+rr
  CTQ30612.1 233 LARVVAMSRRTLTRHFARATGMSITDWLTAERLRRSQTLL-EAGDLPVEQVAEAVGYLSAVTWRQQFKARFGVSPTEWRR 311
                 89************************************88.89************************************8 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.8e-10   8.3e-07       1      42 []     220     261 ..     220     261 .. 0.97
   2 !   27.6   0.0   4.9e-10   2.2e-06       6      42 .]     274     311 ..     272     311 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 1.8e-10
                 HHCCCSCT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   1 LrenlstnltiediAdelgfSrsyFsrlFkketGmtPsqyrt 42 
                 L+++++++ +++++A  + +Sr++++r F ++tGm+++ ++t
  CTQ30612.1 220 LQQHIAEPHSLDSLARVVAMSRRTLTRHFARATGMSITDWLT 261
                 799*************************************86 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 4.9e-10
                 SCT--HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   6 stnltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                 + +l +e++A+++g+ S  + +++Fk+++G++P+++r+
  CTQ30612.1 274 AGDLPVEQVAEAVGYlSAVTWRQQFKARFGVSPTEWRR 311
                 67899*******************************96 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   6.5e-12   2.9e-08      47     164 ..      55     171 ..       5     172 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 6.5e-12
                 EEE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHHTT-EEEEETTTHHHHHHTTTTTTSEE--SGGGHHHHHHTTSEE-SS...SEEE CS
   DJ-1_PfpI  47 kvtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefaekgklvaaICagpqlLaaagvlkgrrvTsypavkdklekagakyvdk...rvvv 142
                  ++++  +   + ++ D++v+p   +   + r ++++++ + ++ ++g  ++ +C g+++L  ag+l+grr+++++ ++++ +    ++  +    +v 
  CTQ30612.1  55 ALYATGDFA--ALEQADIVVVPYWGE--VDRRPPQALLDSLVRARDNGAEMVGLCLGAFVLGYAGLLDGRRAATHWEFEQDFQRRFPQVQLDinaLYVD 149
                 555555444..677899999996544..3444445677777777888888889*****************************777766654457799** PP

                 ETTEEEESSGGGHHHHHHHHHH CS
   DJ-1_PfpI 143 dgnlvTsrgpgaaiefalelle 164
                 d++++Ts+g  aa++ +l +++
  CTQ30612.1 150 DQRIITSAGTAAALDCCLYIIR 171
                 *************999998876 PP

>> Spem1  Spermatid maturation protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.5e-05      0.11      78     129 ..     203     254 ..     180     276 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.5e-05
       Spem1  78 kppakaqdvhiHCtLdPvevkmarptsyssssyhllrnsrssrRrrrrlqhr 129
                   p +++d  i C Ld ++ ++a+p s  s +  + +++r+ +R+  r +  
  CTQ30612.1 203 PVPKNTRDARINCLLDYLQQHIAEPHSLDSLARVVAMSRRTLTRHFARATGM 254
                 345799**********************999999988888888887776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2351.09
//
Query:       CTQ30613.1  [L=259]
Description: putative enzyme [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-11   42.2   0.7    8.3e-11   41.8   0.7    1.2  1  Lactamase_B_2  Beta-lactamase superfamily domain
      2e-10   40.8   0.0      3e-10   40.2   0.0    1.3  1  Lactamase_B_3  Beta-lactamase superfamily domain
    2.2e-06   27.8   0.5    3.8e-06   27.1   0.5    1.4  1  Lactamase_B    Metallo-beta-lactamase superfamily


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.7   1.4e-14   8.3e-11       2     200 ..      19     221 ..      18     222 .. 0.76

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.4e-14
                    EEEES--TT...............HHHHHTCGGS--S.SS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHT CS
  Lactamase_B_2   2 riLiDagpd...............lrqqalralqPve.lrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylalee 81 
                    r+LiD+++                lr +   +    +  rd++ ++daV++th H DH  ++  ++++ pk lp++++ +  a l ++        
     CTQ30613.1  19 RFLIDPMLAdkgawpgfpgtarseLRNP---LV-ELPfSRDKIIDVDAVIVTHTHDDHW-DAAAIAAI-PKTLPVFVQHEADAALLRSQ------- 101
                    8999999999999999999844444433...43.444569*******************.999**996.667**997777777666662....... PP

                    TTTEEEEEE-TTSEEEECSTTEEEEEEEE-EE--C.....TCCE-TTTSEEEEEE.CTTEEEEEESS-S---HHHHHHHCT..-SEEEEE-S-SST CS
  Lactamase_B_2  82 epavnvheldwgesfelgdggleitatparhksgr.....rldrnagdtlGlrie.gggkrvyyigDtgyipeeigerlgg..adllllditayed 169
                     ++ +++ l ++ +f+     l +++t  +h+s r     + +++ g+++G++++  ++k+++ +gDt   + +i++ l +  +d+++l++++ + 
     CTQ30613.1 102 -GFQDLRLLSADSEFAGV--RL-LKTTSGQHGSDRtyavpAMAERLGEACGVVFRhPQEKTLWLMGDTIWRD-DIAADLLKlrPDVVVLNAGYAHV 192
                    .35677889999988875..55.99999*******999998899999********888899*******9555.55544444479*******98776 PP

                    THHHHHHT---STSHHHHCTTSSSSEEEEES CS
  Lactamase_B_2 170 demirhmgHltpeeaveaaadlgakrlvliH 200
                      +  +++ +  e+ + ++  l  ++ + iH
     CTQ30613.1 193 IGF--GPIIMGKEDLLNVHFTLPEAKIMAIH 221
                    443..56666666666666666666666666 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0     5e-14     3e-10       2     152 ..       3     210 ..       2     221 .. 0.72

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 5e-14
  Lactamase_B_3   2 ltwlghnsflletagarilvDPf......kanlgyeppa........................eeaDlvlisqaledHahletlkqlaenvkvlee 67 
                    +t +  ++  ++ ag+r l+DP+               +                         ++D+v++++ ++dH+++++++++ +  +v  +
     CTQ30613.1   3 ITHIRNATQIIDYAGKRFLIDPMladkgaW--------PgfpgtarselrnplvelpfsrdkiIDVDAVIVTHTHDDHWDAAAIAAIPKTLPVFVQ 90 
                    7888899999*************4443330........2345666777777788888888889***********************8444444333 PP

  Lactamase_B_3  68 ...................geslevggleirav.atsh.......davggsergenngflleq.dgltiyhlGhlahelsseelkelgrvDvvltP 135
                                        ++ e++g+++ ++ +++h        +   ++ ge +g +++  ++ t+  +G++    + +      r+Dvv+++
     CTQ30613.1  91 headaallrsqgfqdlrllSADSEFAGVRLLKTtSGQHgsdrtyaVPAMAERLGEACGVVFRHpQEKTLWLMGDTIWRDDIAADLLKLRPDVVVLN 186
                    3444444444544444444444666666554441555566655445555667799******99667777778***9988877777777*******9 PP

  Lactamase_B_3 136 vgg.......pltlgqeealelak 152
                     g        p+++g+e+ l++  
     CTQ30613.1 187 AGYahvigfgPIIMGKEDLLNVHF 210
                    99888998999*****99998865 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.5   6.3e-10   3.8e-06      33     159 ..      35     173 ..       8     196 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 6.3e-10
                  H.............HHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCHCGCCEEEEETTTEECC CS
  Lactamase_B  33 l.............elaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagvsadkpdvdeeeldgna 117
                                el   + k+ dvdavi+TH H DH  +++  +     pv++ +e+++al++  + ++    +    ++s+++ ++ +  + g +
   CTQ30613.1  35 FpgtarselrnplvELPFSRDKIIDVDAVIVTHTHDDHWDAAAIAAIPKTLPVFVQHEADAALLRSQGFQDLRLLS----ADSEFAGVRLLKTTSGQH 128
                  2333334445777999999*******************99999999999999999999999988888888777765....577777777777777777 PP

                  CTEEEEEH..ECTTSTSCCEEEEEETTCCEE.EECTTTSSHHCCC CS
  Lactamase_B 118 ggrralyv..tggpghghghgvveygggkvl.ftGDallagetgr 159
                  g++r++ v  +   +  ++++v++ + +k+l ++GD++ + +++ 
   CTQ30613.1 129 GSDRTYAVpaMAERLGEACGVVFRHPQEKTLwLMGDTIWRDDIAA 173
                  777765441144556666777777744444436777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1943.26
//
Query:       CTQ30614.1  [L=55]
Description: hypothetical protein CH1034_360127 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       236  (0.013163); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.21s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 466.95
//
Query:       CTQ30615.1  [L=186]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-18   67.6   0.2    1.8e-18   66.8   0.2    1.4  1  NUDIX           NUDIX domain
  ------ inclusion threshold ------
      0.024   14.7   0.0      0.037   14.1   0.0    1.2  1  DUF4130         Domain of unknown function (DUF4130
      0.096   12.9   0.1       0.17   12.1   0.1    1.3  1  PIN_10          PIN like domain
       0.96   10.0   3.7        2.5    8.6   3.7    1.7  1  EF-1_beta_acid  Eukaryotic elongation factor 1 beta central a


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.2     4e-22   1.8e-18       3     116 ..      46     157 ..      44     169 .. 0.76

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 4e-22
                 EEEEEEE.EEETTSEEEEEEESSSSTTT..EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEE.EEEEEEEEE..EEECSG CS
       NUDIX   3 rravgvv.llnekgevLlvrrskkpfpg..WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygd.eheilyvfl..eevege 95 
                 r+avg+v + +ek  vLl+r++++  +   W++P G+v++ E+p+ AA+REl+EEtG++a+ +e +        ++ +yg+ +  ++ +++   ++ g 
  CTQ30615.1  46 RPAVGIVaIQDEK--VLLIRHYRYLIDKvvWAIPSGGVDEEEDPAVAALRELREETGWQAQRVEEII------RFNPSYGSsDQLFITWLAtgLRWVGM 136
                 89*****777777..*****9944444478****************************996664444......46667777455555666676666666 PP

                 CSSTSTTTEEEEEEEEHHHH..H CS
       NUDIX  96 lepndenevsevrwvpleel..l 116
                  +    +ev e  w++++e+  l
  CTQ30615.1 137 DAD--QDEVMETGWFTFDEInqL 157
                 554..599999********9432 PP

>> DUF4130  Domain of unknown function (DUF4130
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   8.2e-06     0.037       8      65 ..      65     127 ..      58     132 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.2e-06
     DUF4130   8 yrll..rkafkagkkvledladpdvlrleelarkvsreahrmkgfvRFrel...edgiyvaki 65 
                 yr+l  + +++  ++ +++ +dp+v++l+el+ + + +a+r+++++RF+     +d++++ ++
  CTQ30615.1  65 YRYLidKVVWAIPSGGVDEEEDPAVAALRELREETGWQAQRVEEIIRFNPSygsSDQLFITWL 127
                 66776555667788889999****************************998665577888876 PP

>> PIN_10  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.8e-05      0.17       6      60 ..      82     140 ..      80     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.8e-05
      PIN_10   6 DenlppalakaLrelleeeghevvhlrdkf....aagtkDeeWiaala.eggwvvltkDr 60 
                 De   pa+ +aLrel ee g+++ +++++      +g++D+  i+ la   +wv   +D+
  CTQ30615.1  82 DEEEDPAV-AALRELREETGWQAQRVEEIIrfnpSYGSSDQLFITWLAtGLRWVGMDADQ 140
                 56666644.58*****************999999**************999999888875 PP

>> EF-1_beta_acid  Eukaryotic elongation factor 1 beta central acidic region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.7   0.00056       2.5       6      20 ..      82      96 ..      82      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00056
  EF-1_beta_acid  6 DEEEDeEaerlreeR 20
                    DEEED+ +++lre R
      CTQ30615.1 82 DEEEDPAVAALRELR 96
                    7888*********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 1588.66
//
Query:       CTQ30616.1  [L=284]
Description: Permease of the drug/metabolite transporter (DMT) superfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-28   97.8  31.0    3.5e-15   56.4  10.4    2.0  2  EamA            EamA-like transporter family
     0.0085   16.4   0.0      0.045   14.1   0.0    2.2  3  DAD             DAD family
  ------ inclusion threshold ------
        0.3   11.7   5.6       0.68   10.6   3.8    2.7  2  Nucleos_tra2_N  Na+ dependent nucleoside transporter N-termin


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6  12.5     3e-16   1.8e-12       4     136 ..       8     135 ..       5     136 .. 0.93
   2 !   56.4  10.4   5.9e-19   3.5e-15       6     131 ..     148     273 ..     144     278 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 3e-16
        EamA   4 illallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkkt.sasnaslitsle 101
                 +ll+++a+++ a ++++s+ +++ ++ ++++++rf++a++lll+++  ++ ++     ++w  l++ g l ++l  +l++y++++t s ++ ++i+sl+
  CTQ30616.1   8 DLLLIAATVIAACGWIFSREAIAGMPVFAFLGLRFFFAALLLLPFCRGFRPQK-----QHWPKLIISG-LWFALNLCLWIYSVSTTaSLGEGAFIMSLS 100
                 799*******************************************9999999.....8999977777.899**********99873557********* PP

        EamA 102 PvftlilsvlllgekltlkqllgivlillGvllil 136
                  +f+ + +++  + ++    +  + ++++G+ l++
  CTQ30616.1 101 MMFVPLTAWVMMKVRPPRAWWECLPIAVVGLGLLS 135
                 ******************************99986 PP

  == domain 2  score: 56.4 bits;  conditional E-value: 5.9e-19
        EamA   6 lallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvf 104
                 ++ll al+ +i+f ++ +  r+v+ + lt+v++ i gi+ l i++  e++++ ++l  + +l+   +++t l f+l+++++k+  ++ a++i+ leP++
  CTQ30616.1 148 WFLLTALVQSIWFCYTSRCAREVPLIPLTTVQLAITGIVGLTISAAVERWDQPMTLPTLGWLVASIVIATSLRFGLQMKGQKYAAVASAAIIMVLEPLL 246
                 789************************************999998888888899999****************************************** PP

        EamA 105 tlilsvlllgekltlkqllgivlillG 131
                 t+i ++l++ge+l l +++g vlil++
  CTQ30616.1 247 TVIAAALWYGEQLPLQKIIGGVLILVA 273
                 ************************997 PP

>> DAD  DAD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.99   5.9e+03      59      92 ..      89     122 ..      83     129 .. 0.72
   2 !   14.1   0.0   7.5e-06     0.045       3      79 ..     153     229 ..     151     241 .. 0.90
   3 ?   -1.9   0.0      0.68   4.1e+03      44      63 ..     254     275 ..     228     278 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.99
                 HHHHHHHHHHHHHHHH..S..--TT--TTHHHHH CS
         DAD  59 tvgqfvLtvsLRlqlnaenkkefkeisperafad 92 
                 ++g+  + +sL + +++ ++  ++++ p ra+++
  CTQ30616.1  89 SLGEGAFIMSLSMMFVPLTAWVMMKVRPPRAWWE 122
                 5666667777777777777777777777777766 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 7.5e-06
                 HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHHHHHHHH..S.. CS
         DAD   3 eilkellesYlkktpkrlkliDafllflvlvgvlqfvYcvlvgnfpfnaflsgfiatvgqfvLtvsLRlqlnaenkk 79 
                  ++++++  Y+++  +++ li    + l ++g++ ++  + v+ ++    l ++   v+++v++ sLR  l+ + +k
  CTQ30616.1 153 ALVQSIWFCYTSRCAREVPLIPLTTVQLAITGIVGLTISAAVERWDQPMTLPTLGWLVASIVIATSLRFGLQMKGQK 229
                 578999**************************************************************999866654 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.68
                 T..--SSCHHHHHHHHHHHHHH CS
         DAD  44 v..gnfpfnaflsgfiatvgqf 63 
                    ++ p++ +++g+++ v+q+
  CTQ30616.1 254 WygEQLPLQKIIGGVLILVAQL 275
                 3336778888888988888875 PP

>> Nucleos_tra2_N  Na+ dependent nucleoside transporter N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.8   0.00011      0.68       4      40 ..      15      49 ..      12      94 .. 0.92
   2 ?   -1.9   0.0      0.87   5.2e+03      35      48 ..     107     120 ..      72     132 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
                    HHHHHHHHHT-S-GGG--HHHHHHHHHHHHHHHHHHH CS
  Nucleos_tra2_N  4 lvllliawllSenrkainwrtVigglllQfvlAlfvl 40
                    +v+ ++ w++S  r+ai   +V++ l+l f++A+++l
      CTQ30616.1 15 TVIAACGWIFS--REAIAGMPVFAFLGLRFFFAALLL 49
                    7999*******..9********************998 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.87
                     HHHHHHTSHHHHHH CS
  Nucleos_tra2_N  35 lAlfvlktpagrdv 48 
                      A++++k+ ++r+ 
      CTQ30616.1 107 TAWVMMKVRPPRAW 120
                     35556666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      213  (0.0118802); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2258.63
//
Query:       CTQ30617.1  [L=269]
Description: cytoplasmic membrane lipoprotein-28 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-93  312.5   0.1    1.4e-93  312.3   0.1    1.0  1  Lipoprotein_9  NLPA lipoprotein
     0.0033   17.1   0.1     0.0051   16.4   0.1    1.6  1  OpuAC          Substrate binding domain of ABC-type glycine b


Domain annotation for each model (and alignments):
>> Lipoprotein_9  NLPA lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  312.3   0.1   1.6e-97   1.4e-93       1     236 []      31     269 .]      31     269 .] 1.00

  Alignments for each domain:
  == domain 1  score: 312.3 bits;  conditional E-value: 1.6e-97
                    EEEEEETTTHHHHHHHHHHHHHTTT.EEEEEEEESSSSHHHHHHHTTSSSEEEEEEHHHHHHHHHHTT-.EEEEEEEEE---EEE-SS-SSGGG-- CS
  Lipoprotein_9   1 lkvGvlsgpeaevlekvkkllkkkg.ldleiveFtdyvqpNkaladgeiDanaFQhlpyLeqfnkekgkklvavgnthvepiglYSkkykslselk 95 
                    +kvGv++g+e++v+e++kk++k+k+ l++e+v F+    pN+ +++g++Dan+FQh p+Leq nk+++++lvavgnt+v p++ YS+k+ks++elk
     CTQ30617.1  31 IKVGVINGAEQDVAEVAKKVAKEKYgLEVELVGFSGSLLPNESTNAGDLDANVFQHRPFLEQDNKAHNYHLVAVGNTFVFPMAGYSRKIKSVAELK 126
                    89********************************************************************************************** PP

                    TT-EEEEESSHHHHHHHHHHHHHTTSSEE-TT-CTT--GGGEEE-TT--EEEEE-GGGHHHHGGT..SSEEEE-HHHHHHTT--HHHH-SEE-SST CS
  Lipoprotein_9  96 eGatiavpndpsnegRaLllLekagLikLkdgkgllatvkdIteNpknLkikeleaaqlpraldd..vdaavintnyalkagldpkkdalfeedkd 189
                    +Gatia+pndp+n gRaLllL+k+ Li+Lk+g+gll t  dIt+Np+nLki ele aqlpr+ldd  vd+a+i t+y  ++gl+p +d++f edk+
     CTQ30617.1 127 DGATIAIPNDPTNLGRALLLLQKEKLITLKAGTGLLPTAVDITDNPHNLKIMELEGAQLPRVLDDpkVDVAIISTTYLQQTGLSPVRDGIFIEDKN 222
                    ************************************************************************************************ PP

                    SSG-EEEEEETTCTTSHHHHHHHHHHTSHHHHHHHHHHTTTSSEE-S CS
  Lipoprotein_9 190 spyvniivvrekdkddeavkklveayqseevkkaiekkykgavvpaw 236
                    spyvniiv+re++kd+++vk+++++yqs+ev+ka+e  ++g++vp+w
     CTQ30617.1 223 SPYVNIIVTREDNKDAQNVKEFMQSYQSPEVAKAAETIFNGGAVPGW 269
                    *********************************************98 PP

>> OpuAC  Substrate binding domain of ABC-type glycine betaine transport system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   5.6e-07    0.0051       1     113 [.      29     130 ..      29     257 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.6e-07
                 CEEEEEEESSHHHHHHHHHHHHHHHHT.TEEEEEEEEESHHHHHHHHHTTSSSEEEEEEHHHHHHHHHHHHHHHHEEEEEEEESEEECEEEEEEHHHHH CS
       OpuAC   1 ktivigsknwteqevlaeilkqllekk.GykveltnlgstavlfaalasGdiDvypeewtgtayeaykkaveekkglevlgplgagnteglavpkyvae 98 
                 k+i++g+ n +eq v ae++k++ ++k G++vel++++++    ++   Gd+D+ +    + ++     ++  k + +     ++gnt  + +  y   
  CTQ30617.1  29 KHIKVGVINGAEQDV-AEVAKKVAKEKyGLEVELVGFSGSLLPNESTNAGDLDANVFQHRPFLE-----QDN-KAHNY--HLVAVGNTFVFPMAGYS-- 116
                 689**********97.788888888888***********99999999*******9955555443.....222.22222..22356666666666666.. PP

                 HHTTTBHHHHCTHHG CS
       OpuAC  99 kygiksisDLkkpae 113
                   +iks+++Lk+ a 
  CTQ30617.1 117 -RKIKSVAELKDGAT 130
                 .77888888866555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2129.54
//
Query:       CTQ30618.1  [L=301]
Description: Transcriptional regulator, AraC family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      9e-30  103.8   5.9      9e-30  103.8   5.9    1.7  2  Cupin_6       Cupin
    9.9e-21   73.8   4.1    1.6e-20   73.1   4.1    1.3  1  HTH_18        Helix-turn-helix domain
    4.6e-16   58.4   0.1    3.1e-08   33.5   0.0    2.4  2  HTH_AraC      Bacterial regulatory helix-turn-helix proteins,
    2.5e-09   37.1   1.1    2.5e-09   37.1   1.1    1.9  2  AraC_binding  AraC-like ligand binding domain
    1.7e-07   30.9   0.2    3.7e-07   29.8   0.2    1.5  1  Cupin_2       Cupin domain
    3.9e-06   26.5   0.2    8.5e-06   25.4   0.0    1.6  2  Cupin_3       Protein of unknown function (DUF861)


Domain annotation for each model (and alignments):
>> Cupin_6  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   5.9     3e-33     9e-30       1     182 [.       2     182 ..       2     184 .. 0.84
   2 ?   -2.2   0.1      0.99     3e+03     130     155 ..     202     224 ..     200     233 .. 0.67

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 3e-33
     Cupin_6   1 DvLsdlLagvrlrgalffrsaltapwsl.rf..pag.lalhvvlrGscwlidpasgepvrLsagdvvllpggephvladspgtaplaviealgeasglg 95 
                 D Ls+lLa + +r ++ +++++ + w++ +   ++g +  hvvlrG+ +l +++  ++  L+agdvvllp+g+ph + +  +  +  v+    ++ +++
  CTQ30618.1   2 DSLSHLLALLAPRCEVNLHCRFGGRWQAgHQqmRSGvVPWHVVLRGEGRLNVGG--QTHHLRAGDVVLLPHGSPHLMESLVEWGQ--VL----PVAHRF 92 
                 88**************************633333338**************988..789******************77777332..33....334445 PP

     Cupin_6  96 egetgn..ngagegttvllcGayqfdgsvsdpllaaLPrvlvv.aae.eaapelrallellaaElardrpGsqavldrLldlLlvqaLRaw 182
                 +g+ ++  +g+ eg+ ++lcG + f+++v + l+++   ++++  ++ e+ pel+all+ l++E+ ++rpG +a++  L d Llv +LR +
  CTQ30618.1  93 NGTVTEmrAGPAEGALEMLCGEFYFGPHV-SWLFSEASTLIHLhTDArEDCPELDALLNILVRESLAQRPGGSAIVRSLGDTLLVLLLRML 182
                 664444224555589***********999.57888889*****8666788***************************************75 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.99
     Cupin_6 130 LPrvlvvaaeeaapelrallellaaE 155
                 +P+vl v    a pe  ++le +aa 
  CTQ30618.1 202 MPAVLAV---MATPEQPWTLESMAAR 224
                 7888888...3456666666666665 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   4.1   5.3e-24   1.6e-20       1      80 [.     221     300 ..     221     301 .] 0.96

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 5.3e-24
                 HHHHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-HHHHHH CS
      HTH_18   1 laaalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetPseyrr 80 
                 +aa++ +sr t+ r+f rv++ltp+++l +lR+  A rlL+ + ++++  iA+++GF++l++Fs+ f+ ++g+tP+e+rr
  CTQ30618.1 221 MAARAFLSRATFARHFARVYHLTPQAWLSQLRMALAARLLRLERQTNLEVIAERCGFQSLASFSKRFKMRYGVTPGEWRR 300
                 699***********************************99767899*********************************8 PP

>> HTH_AraC  Bacterial regulatory helix-turn-helix proteins, AraC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.7e-08     8e-05       7      41 ..     214     248 ..     212     249 .. 0.96
   2 !   33.5   0.0     1e-11   3.1e-08       9      42 .]     266     300 ..     261     300 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.7e-08
                 CT--HHHHHHHTTSSHHHHHHHHHHHSSS-HHHHH CS
    HTH_AraC   7 tnltiediAdelgfSrsyFsrlFkketGmtPsqyr 41 
                 +++t+e++A+ + +Sr +F r F +++  tP++++
  CTQ30618.1 214 QPWTLESMAARAFLSRATFARHFARVYHLTPQAWL 248
                 79********************************8 PP

  == domain 2  score: 33.5 bits;  conditional E-value: 1e-11
                 --HHHHHHHTTS.SHHHHHHHHHHHSSS-HHHHHH CS
    HTH_AraC   9 ltiediAdelgf.SrsyFsrlFkketGmtPsqyrt 42 
                  ++e iA+ +gf S   Fs++Fk ++G+tP ++r+
  CTQ30618.1 266 TNLEVIAERCGFqSLASFSKRFKMRYGVTPGEWRR 300
                 57999****************************96 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   1.1   8.5e-13   2.5e-09       4      63 ..      19      78 ..      16      84 .. 0.89
   2 ?   -2.4   0.1       1.4   4.1e+03     100     125 ..     238     261 ..     211     269 .. 0.55

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 8.5e-13
                  EEEEETTSTT-SEEEETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE CS
  AraC_binding  4 iegieagypdhsfpphvhdeyvihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyes 63
                  + + + g ++ ++++ + +   +h+v++G+grl ++g+t++l++Gd++Llp g pH +es
    CTQ30618.1 19 LHCRFGGRWQAGHQQMRSGVVPWHVVLRGEGRLNVGGQTHHLRAGDVVLLPHGSPHLMES 78
                  5677888888899888889999***********************************998 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
                   E---TTTHHHHHHHHHHHHHHHT-SS CS
  AraC_binding 100 lledeelaqllralfrlleetrsgdd 125
                    + + + +++l++l  +l  +++  +
    CTQ30618.1 238 RVYHLTPQAWLSQLRMAL--AARLLR 261
                   344445556666666666..444444 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.2   1.2e-10   3.7e-07      22      57 ..      41      76 ..      32      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.2e-10
                EEEEEESEEEEEECTEEEEEETTEEEEE-TT-EEEE CS
     Cupin_2 22 ffyVleGegeltvdgeeveleaGdsvyfpagtpHrf 57
                + +Vl+Geg+l v+g++++l+aGd+v+ p g pH +
  CTQ30618.1 41 WHVVLRGEGRLNVGGQTHHLRAGDVVLLPHGSPHLM 76
                568*******************************76 PP

>> Cupin_3  Protein of unknown function (DUF861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.8e-09   8.5e-06      16      60 ..      29      72 ..      20      88 .. 0.80
   2 ?   -3.5   0.0         3   8.9e+03      14      20 ..     293     299 ..     291     300 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.8e-09
                CEEEEECESSEEEEEEEECEEEEEETTTEEEEEETTEEEEE-TTE CS
     Cupin_3 16 pGkfrltyeedEfcyileGevkvtpeggetvelraGDlvvlpkgl 60
                +G ++++ +      +l+Ge ++++ gg+t++lraGD+v lp g+
  CTQ30618.1 29 AGHQQMRSGVVPWHVVLRGEGRLNV-GGQTHHLRAGDVVLLPHGS 72
                455555555555559**********.*****************98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3
                 EECEEEE CS
     Cupin_3  14 ctpGkfr 20 
                 +tpG++r
  CTQ30618.1 293 VTPGEWR 299
                 79**998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2465.57
//
Query:       CTQ30619.1  [L=178]
Description: Alkylhydroperoxidase AhpD family core domain-containing protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-15   55.0   1.8    3.1e-12   46.4   0.8    2.3  2  CMD              Carboxymuconolactone decarboxylase family
    0.00031   21.1   0.1       0.11   12.9   0.0    2.2  2  CPSase_L_D3      Carbamoyl-phosphate synthetase large chain, 
  ------ inclusion threshold ------
      0.013   15.9   0.0      0.093   13.2   0.0    2.2  2  HTH_26           Cro/C1-type HTH DNA-binding domain
      0.095   11.6   0.0       0.13   11.2   0.0    1.2  1  mTERF            mTERF
       0.12   12.8   0.1         15    6.1   0.0    2.8  3  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.8   8.6e-16   3.1e-12      11      65 ..      51     104 ..      42     122 .. 0.82
   2 !    7.4   0.0    0.0012       4.4      45      74 ..     133     162 ..     123     169 .. 0.83

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 8.6e-16
                 HHHHCCGSSTS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHH CS
         CMD  11 reallareggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevla 65 
                 ++a+l  +g+L++++ e i+l vs a+gc+yC++aHt +A++aG + e+i ++ +
  CTQ30619.1  51 HNAMLH-KGSLSAQQLEAINLSVSEATGCDYCLAAHTLMAKKAGFSSEQIHALRR 104
                 345555.899*****************************************7765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0012
                 HHHHHHHHTT--HHHHHHHHHHHHHHHSHH CS
         CMD  45 aHtraAleaGvteeeiaevlaqaaayagwp 74 
                 a ++a+++aG +++++ e++    a  +++
  CTQ30619.1 133 ADVAALRNAGFSDQQVIEIISAISAILFTN 162
                 568999**************9888777765 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0024       8.6      62      82 ..      85     105 ..      60     114 .. 0.73
   2 !   12.9   0.0     3e-05      0.11      40      80 ..     112     152 ..     110     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0024
  CPSase_L_D3  62 llreakklGfsDkqiaellee 82 
                      akk+Gfs +qi +l   
   CTQ30619.1  85 HTLMAKKAGFSSEQIHALRRG 105
                  45679***********99643 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3e-05
  CPSase_L_D3  40 kleelvelekelkkkkkeldeellreakklGfsDkqiaell 80 
                  +l  lv+++++l +++ +l+++ +  ++++GfsD+q+ e++
   CTQ30619.1 112 QLDALVKFAQTLVTTTGTLPKADVAALRNAGFSDQQVIEII 152
                  7899***********99*******************99886 PP

>> HTH_26  Cro/C1-type HTH DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.5   1.8e+03       3      23 ..      46      71 ..      44      78 .. 0.54
   2 ?   13.2   0.0   2.6e-05     0.093      16      57 ..      88     130 ..      82     133 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.5
      HTH_26  3 relmadrgi.tkseLa....rgtgis 23
                ++++a++ +  k +L+    +++++s
  CTQ30619.1 46 QQALAHNAMlHKGSLSaqqlEAINLS 71
                56666666666666652222355555 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.6e-05
      HTH_26  16 Largtgisaatlsrlvkgk.pervsldtLdkiCdaLgctpgDL 57 
                 +a+++g+s+ +++ l+ g+ +e   ld L k++++L  t g L
  CTQ30619.1  88 MAKKAGFSSEQIHALRRGEyAEEAQLDALVKFAQTLVTTTGTL 130
                 799***************9669************998777665 PP

>> mTERF  mTERF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.5e-05      0.13     182     248 ..      96     163 ..      86     174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.5e-05
       mTERF 182 kkkiefLkklglseeellrvikkyPqilslseeki.lksvetLlglGfskeevakmvkrfpqllglsa 248
                 +++i+ L++ +  ee  l  + k++q l++   ++ +  v  L + Gfs+++v +++ + + +l+ ++
  CTQ30619.1  96 SEQIHALRRGEYAEEAQLDALVKFAQTLVTTTGTLpKADVAALRNAGFSDQQVIEIISAISAILFTNM 163
                 5678888888888888888888999999999666625689***********************99876 PP

>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.8   6.3e+03      43      48 ..      54      59 ..      30      75 .. 0.57
   2 ?    6.1   0.0    0.0043        15      24      38 ..      90     104 ..      84     107 .. 0.89
   3 ?    3.2   0.0     0.035   1.2e+02      20      44 ..     135     160 ..     123     171 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.8
                     HHSSSS CS
  Acetyltransf_11 43 lyrsgl 48
                     + ++g 
       CTQ30619.1 54 MLHKGS 59
                     333333 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0043
                      HHTT--HHHHHHHHH CS
  Acetyltransf_11  24 kRrgfseeeikalkk 38 
                      k++gfs+e+i+al++
       CTQ30619.1  90 KKAGFSSEQIHALRR 104
                      899**********97 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.035
                      HHHHHHTT--HHHHHHHHHHH.HHHH CS
  Acetyltransf_11  20 lvgLkRrgfseeeikalkkay.rlly 44 
                      +  L+ +gfs++++ ++  a   +l+
       CTQ30619.1 135 VAALRNAGFSDQQVIEIISAIsAILF 160
                      5679******9996555554404444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1345.53
//
Query:       CTQ30620.1  [L=156]
Description: 50S ribosomal protein L21 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-66  219.7   6.7      1e-65  219.5   6.7    1.0  1  DUF1348   Protein of unknown function (DUF1348)
    0.00016   22.3   0.9     0.0002   21.9   0.9    1.2  1  SnoaL_2   SnoaL-like domain
  ------ inclusion threshold ------
      0.022   15.1   0.1      0.031   14.7   0.1    1.3  1  DUF4440   Domain of unknown function (DUF4440)
       0.16   12.4   2.2       0.21   12.0   2.2    1.1  1  DUF3757   Protein of unknown function (DUF3757)


Domain annotation for each model (and alignments):
>> DUF1348  Protein of unknown function (DUF1348)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.5   6.7   2.2e-69     1e-65       1     130 []       9     138 ..       9     138 .. 1.00

  Alignments for each domain:
  == domain 1  score: 219.5 bits;  conditional E-value: 2.2e-69
     DUF1348   1 PpftaetaakkvraaedaWntrdpekvalaytedsvWrnrdeflkgreeiveflkkkwekeldyrlikelfaftdnriavrfayeykdesgqwfrsyGn 99 
                 Ppft+++a++kvraaed Wn+rd+ekvalayt ds+Wrnr+ef++gr +ivefl++kw+ke++yrlikel+a+++nriavrfaye+ d+sg+wfrsyGn
  CTQ30620.1   9 PPFTRDSAIQKVRAAEDGWNSRDAEKVALAYTVDSEWRNRSEFVHGRGQIVEFLQRKWRKEQQYRLIKELWAWQENRIAVRFAYEWCDDSGNWFRSYGN 107
                 9************************************************************************************************** PP

     DUF1348 100 enWefdeeGlmkkreasindvaikeeerkfk 130
                 enWefd++Glm++r+a+ind++i+e+er+f+
  CTQ30620.1 108 ENWEFDKHGLMQTRYACINDLPISESERLFH 138
                 ****************************997 PP

>> SnoaL_2  SnoaL-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.9   4.5e-08    0.0002       1      73 [.      20      92 ..      20     119 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.5e-08
                HHHHHHHHHTTCHHHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEE.EEETTEEEEEEEE CS
     SnoaL_2  1 vraflaalnagdldalaalfapdvvwedpggelrGreairaffralfaafpdlrfeihdv.vadgdrvavewtv 73
                vra  + +n++d++++a  ++ d +w++    ++Gr +i +f+++ +++  ++r  i+++ + +++r+av++ +
  CTQ30620.1 20 VRAAEDGWNSRDAEKVALAYTVDSEWRNRSEFVHGRGQIVEFLQRKWRKEQQYRL-IKELwAWQENRIAVRFAY 92
                6778899**********************989***************94444444.444447778888888655 PP

>> DUF4440  Domain of unknown function (DUF4440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   6.8e-06     0.031       5      75 ..      20      90 ..      17     112 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.8e-06
                HHHHHHHHHCT-HHHHHHCEEEEEEEE-TTS-EEEHHHHHHHHHCCHCEEEEEEEEEEEEEEETTEEEEEE CS
     DUF4440  5 eealeeafvagdaealaallapdavlvgpsgtvldkeellealeagfaagrslelteeevrvlgdlAvvtg 75
                ++a e+ ++++dae++a  ++ d ++ ++s+ v+++ +++e l++++ + ++++l  e  +  ++  +v++
  CTQ30620.1 20 VRAAEDGWNSRDAEKVALAYTVDSEWRNRSEFVHGRGQIVEFLQRKWRKEQQYRLIKELWAWQENRIAVRF 90
                6788999*****************************************99999988776666655555554 PP

>> DUF3757  Protein of unknown function (DUF3757)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.2   4.6e-05      0.21      26     112 ..      42     129 ..      22     131 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.6e-05
     DUF3757  26 eeeWvgqsaakeeetavksFsealilqakngrlvkCtYklsagevsidleYkaasgeelvvslegktaWekeegal.lelyvCtksap 112
                 ++eW+ +s   + ++++++F + +  ++++ rl k  ++ +++ + ++  Y+    ++      g+ +We ++++l  + y C +  p
  CTQ30620.1  42 DSEWRNRSEFVHGRGQIVEFLQRKWRKEQQYRLIKELWAWQENRIAVRFAYEWCDDSGNWFRSYGNENWEFDKHGLmQTRYACINDLP 129
                 689***9999999*************99999********************9999999999999999*****99998999***98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1205.22
//
Query:       CTQ30621.1  [L=123]
Description: Flavodoxin reductases (Ferredoxin-NADPH reductases) family 1 (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0014   18.7   0.0     0.0022   18.1   0.0    1.3  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
     0.0051   16.9   5.7       0.01   15.9   5.7    1.5  1  bZIP_2          Basic region leucine zipper
  ------ inclusion threshold ------
      0.017   15.2   0.5      0.036   14.1   0.5    1.5  1  DUF1192         Protein of unknown function (DUF1192)
      0.042   14.1   0.5      0.072   13.3   0.5    1.4  1  ABC_tran_CTD    ABC transporter C-terminal domain
      0.075   13.1   1.3       0.16   12.0   1.3    1.6  1  DUF465          Protein of unknown function (DUF465)
       0.77    9.7   4.1        8.1    6.4   3.1    2.3  2  RBD-FIP         FIP domain
          1    9.3   5.5        1.9    8.4   5.5    1.4  1  GIT_CC          GIT coiled-coil Rho guanine nucleotide exchan


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   8.6e-07    0.0022      43      87 ..       3      47 ..       1      48 [. 0.94

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 8.6e-07
                    EEEEETTSHHHHHHHHH-EEEEEEEETTGSEEEEEEEEEEEESCH CS
  Putative_PNPOx 43 vfatnadsrklrnleenprvallflddelgrgvrieGtaelvsdg 87
                    +f +n++  +++nl+   r++l  +d++ + +++i++t+e++ ++
      CTQ30621.1  3 DFGGNRQYITTGNLRGSDRACLFMMDYPRRARLKIYATVEVLAAE 47
                    68999************************************9886 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   5.7   4.1e-06      0.01      26      49 ..      96     119 ..      92     121 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.1e-06
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  26 keeeleervkeLeeeNaqLrqkve 49 
                 ++++l++r+ +Le+eN++L+q+++
  CTQ30621.1  96 YNQNLQQRIHDLEQENQRLQQQLA 119
                 789*******************97 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.5   1.4e-05     0.036      24      46 ..      99     121 ..      97     123 .] 0.92

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
     DUF1192  24 ELeerIalLeaEIaRleaaiakk 46 
                  L++rI +Le+E +Rl++++a++
  CTQ30621.1  99 NLQQRIHDLEQENQRLQQQLARR 121
                 69******************997 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   2.8e-05     0.072       8      33 ..      94     120 ..      87     122 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.8e-05
  ABC_tran_CTD   8 relee.leaeIeaLEeeiaeleaelad 33 
                    e+ + l ++I  LE+e + l+++la 
    CTQ30621.1  94 AEYNQnLQQRIHDLEQENQRLQQQLAR 120
                   565544*******************85 PP

>> DUF465  Protein of unknown function (DUF465)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.3   6.2e-05      0.16       6      31 ..      94     120 ..      90     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.2e-05
                 HHHHH.HHHHHHHHHTT-.S-HHHHHH CS
      DUF465   6 eeHee.LdkeIhalearpvtddleier 31 
                 +e+++ L ++Ih+le+ ++  +++++r
  CTQ30621.1  94 AEYNQnLQQRIHDLEQENQRLQQQLAR 120
                 8*****************988888876 PP

>> RBD-FIP  FIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.084   2.2e+02      31      40 ..      46      55 ..      43      56 .. 0.84
   2 ?    6.4   3.1    0.0032       8.1       4      21 ..      99     116 ..      97     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.084
                HHC-GGGGBS CS
     RBD-FIP 31 mEhnPsILev 40
                +E +P++L +
  CTQ30621.1 46 AEDHPQLLAQ 55
                699****965 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0032
                 HHHHHHHHHHHHHHHHHH CS
     RBD-FIP   4 eLiqalqkqEeenrrLed 21 
                  L+q +++ E en rL++
  CTQ30621.1  99 NLQQRIHDLEQENQRLQQ 116
                 69**************97 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.5   0.00074       1.9      33      58 ..      91     116 ..      88     119 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00074
      GIT_CC  33 qqLlkvNtslsdelrlLQskvqkLqa 58 
                 qq+ + N++l++ ++ L ++ q+Lq+
  CTQ30621.1  91 QQVAEYNQNLQQRIHDLEQENQRLQQ 116
                 56666666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1634  (0.0911373); expected 358.6 (0.02)
Passed bias filter:                      995  (0.0554967); expected 358.6 (0.02)
Passed Vit filter:                       171  (0.00953762); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 982.16
//
Query:       CTQ30622.1  [L=62]
Description: Putative enzyme with a phophatase-like domain (fragment) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       200  (0.0111551); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 557.50
//
Query:       CTQ30623.1  [L=323]
Description: LysR substrate binding domain protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-39  135.0   8.3    2.9e-39  134.6   8.3    1.2  1  LysR_substrate  LysR substrate binding domain
      1e-17   63.8   1.8    1.9e-17   62.9   1.8    1.5  1  HTH_1           Bacterial regulatory helix-turn-helix protein
      0.008   15.7   0.2      0.024   14.2   0.0    1.9  2  HTH_24          Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.6   8.3   4.8e-43   2.9e-39       2     207 ..     107     311 ..     106     313 .. 0.95

  Alignments for each domain:
  == domain 1  score: 134.6 bits;  conditional E-value: 4.8e-43
                     TTSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSSCCTTEEEEEEEEEEEEEEEETTSGGGG.SSS CS
  LysR_substrate   2 gglrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagppedsglearpLaeeplvlvaspdhpLar.gep 95 
                     ++++g+L i+ap+ ++r+++ p++++f aryP ++++l  +d  + +dl+ ++ +Dla+r g+++ds+++a++L++ ++v++a+p+  La+ gep
      CTQ30623.1 107 QEPKGELVISAPTMFGRQHVLPVISEFIARYPLIRVRLLLSD--RNADLVSDH-VDLAVRIGDLADSSMVATRLGTMRIVACAHPAL-LAKyGEP 197
                     799***************************************..*********.********************************9.999**** PP

                     ECGGGGCTSEEEEESTTSTHHHHHHHHHHCT..TEECEEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCE.EEEEEEE CS
  LysR_substrate  96 vsledLadeplilleegsglrdlledalrea..glkprvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplp.relylvy 187
                      +++dLa +p i  e + ++r +  +a +++   +++ ++l+v++ e+++++++ G+G+a l ++ + d l++g+l+ l l++ ++  ++++l+y
      CTQ30623.1 198 QRPRDLAALPIIRIESPMPYRGWRFRAAEREdqLINLPPVLSVTTPESAADAARLGVGVARLLHYQALDGLRHGELR-LLLENVEPDpAPVHLLY 291
                     ***************9999666666666655468888****************************************.***************** PP

                     ETTCCCHHHHHHHHHHHHHH CS
  LysR_substrate 188 rkgrelspavrafidflrea 207
                      +++ ++ ++r fidf++ a
      CTQ30623.1 292 TARDLAPLKLRKFIDFAAPA 311
                     ****************9765 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   1.8   3.3e-21   1.9e-17       1      59 [.      23      81 ..      23      82 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 3.3e-21
                HHHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHH CS
       HTH_1  1 lrqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaG 59
                l++++l+v+v e gs+++AA++L++   +vsr+i +LE++lgv+L+ Rt+r+l+LT+aG
  CTQ30623.1 23 LNAMALLVKVTELGSMSAAARALNMPLTTVSRHIGELESALGVRLLARTTRKLTLTDAG 81
                6899******************************************************9 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.1e-06     0.024      20      43 ..      38      61 ..      37      62 .. 0.89
   2 ?   -2.6   0.0      0.69   4.1e+03       6      14 ..      89      97 ..      88     102 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-06
      HTH_24 20 qreLAerlglSpstvnrrlkrLee 43
                ++  A++l+++++tv+r++ +Le+
  CTQ30623.1 38 MSAAARALNMPLTTVSRHIGELES 61
                66779*****************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.69
      HTH_24  6 rkILelLqk 14
                r+ILe+++ 
  CTQ30623.1 89 RRILEEVEN 97
                799999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 2833.85
//
Query:       CTQ30624.1  [L=497]
Description: Drug:H+ antiporter-2 (14 Spanner) (DHA2) family drug resistance MFS transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-54  185.2  53.8    2.1e-54  184.8  46.8    2.2  2  MFS_1       Major Facilitator Superfamily
    2.7e-11   43.0  29.2    6.2e-11   41.8  12.8    2.6  2  Sugar_tr    Sugar (and other) transporter
    3.4e-10   39.0  25.0    5.3e-09   35.1  25.0    2.4  1  TRI12       Fungal trichothecene efflux pump (TRI12)
    4.9e-06   25.7   6.9    4.9e-06   25.7   6.9    2.5  3  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
       0.32    9.2  10.8       0.05   11.9   1.0    2.4  2  OATP        Organic Anion Transporter Polypeptide (OATP) fami


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8  46.8     6e-58   2.1e-54       1     352 [.      20     412 ..      20     413 .. 0.89
   2 !    4.7   0.6    0.0033        12     150     178 ..     466     492 ..     458     496 .. 0.79

  Alignments for each domain:
  == domain 1  score: 184.8 bits;  conditional E-value: 6e-58
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 lll+ +lsal+ +i+++alp ++  +lg   + +++++t+y l + +a++++G ++d fGr+ vl +++ lf++g++l+ +a++++ l+++r lqGlg+
  CTQ30624.1  20 LLLVMLLSALDQTIVSTALP-TIVGELG-GLDKLSWVVTAYILSSTIAVPLYGKFGDLFGRKIVLQVAIGLFLVGSALCGLAQNMTQLVLMRGLQGLGG 116
                 68999***************.9******.**********************************************55555579999************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 g+l+ +++a++ad+ p+ +rgr+ gl+++ f+l++++gpl+gg+l+++++Wr++fyi+ +++l+a++++++++  ++++++ + ++             
  CTQ30624.1 117 GGLMVISMAAVADVIPPANRGRYQGLFGGVFGLATVIGPLIGGFLVQHASWRWIFYINLPLGLFALLVIGAVFHSSNKRSQHQIDWLGAiylsmallci 215
                 *******************************************************************9999**9999999999999888********** PP

       MFS_1 189 ...................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllal 252
                                                    ++ +  p++p + +++++ +l+ + ++ +++++ ++g +t+lplylq v   +   +agl l  
  CTQ30624.1 216 ilftseggsvhawndpqlwcilafgivgiigfiyeERMAAEPIIP-LALFRNRSFLL-CSLIGFVIGMSLFGSVTFLPLYLQVVKEAT-PTEAGLQLIP 311
                 *********************************************.55555555444.66666666679999****************.7888866666 PP

       MFS_1 253 lalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvl.iGfglgfvfpsllalasdlappeeagtasglfntagslgga 350
                 l+ + +  ++++gr++ r+g+ r   + + ll ++ + l+   +++s+++ l+++   +G glg+v+  l  ++++ +p+++ g a++ +++++s+gg+
  CTQ30624.1 312 LMGGLLLTSIISGRIISRTGKYRLFPILGTLLGVTGMVLLTRITIHSPLWQLYLFTGvLGAGLGLVMQVLVLAVQNAMPAQMYGVATSGVTLFRSIGGS 410
                 666656669***********955555555555555555555555599999998444469**************************************** PP

       MFS_1 351 lg 352
                 +g
  CTQ30624.1 411 IG 412
                 98 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0033
       MFS_1 150 Wravfyilaivsllafvlfllllpeeppe 178
                  +a+f+++a+++++afvl   +l+ e+p 
  CTQ30624.1 466 IHAAFLMAAGIMAVAFVL--SWLLKEAPL 492
                 789************998..888777765 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8  12.8   1.7e-14   6.2e-11      48     187 ..      51     184 ..      42     222 .. 0.92
   2 !    6.6   8.4   0.00081       2.9      55     162 ..     312     421 ..     267     443 .. 0.84

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.7e-14
                 HHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH CS
    Sugar_tr  48 sglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqla 146
                 ++++v ++++ ++i   + g++gd fGRk +l +a+ lf++g++l+++a+   ++ +l+++R l G+g G+  v++   ++ + p++ Rg+  +l+   
  CTQ30624.1  51 LSWVVTAYILSSTIAVPLYGKFGDLFGRKIVLQVAIGLFLVGSALCGLAQ---NMTQLVLMRGLQGLGGGGLMVISMAAVADVIPPANRGRYQGLFGGV 146
                 68************************************************...9************************************999999888 PP

                 HHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHH CS
    Sugar_tr 147 itfGilvaaifglglnktsnadgwrillglqlvpallllil 187
                   +  +++  +g +l +  +   wr+ ++++l + l+ l++
  CTQ30624.1 147 FGLATVIGPLIGGFLVQHAS---WRWIFYINLPLGLFALLV 184
                 88888888888888877777...999999998888765554 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00081
                 HHHHHHHHHHHHHHHHHHTTHHHHHHH.HHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHH CS
    Sugar_tr  55 flvGaiiGslfagllgdrfGRkkslli.aavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGil 152
                 ++ G +++s+++g ++ r G+   + i +++l v g vl   ++  + +++l++   ++G g+Gl+  +  + ++   p+++ g  +s   l+ ++G  
  CTQ30624.1 312 LMGGLLLTSIISGRIISRTGKYRLFPIlGTLLGVTGMVLLTRITIHSPLWQLYLFTGVLGAGLGLVMQVLVLAVQNAMPAQMYGVATSGVTLFRSIGGS 410
                 45577889************8887766599999***********99***********************************************999987 PP

                 HH.HHHHHHHH CS
    Sugar_tr 153 va.aifglgln 162
                 ++ a fg+++ 
  CTQ30624.1 411 IGvALFGAVFT 421
                 66144455444 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1  25.0   1.5e-12   5.3e-09      63     331 ..      34     289 ..      11     434 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.5e-12
       TRI12  63 sasalpnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagp.agasplfvgelm. 159
                  ++alp i+ ++g  ++ s + t + +  ++++ + g++ d fgr+ ++ ++  l lvg+ +   a+++  l+    l g+  g     s   v +++ 
  CTQ30624.1  34 VSTALPTIVGELGGLDKLSWVVTAYILSSTIAVPLYGKFGDLFGRKIVLQVAIGLFLVGSALCGLAQNMTQLVLMRGLQGLGGGGlMVISMAAVADVIp 132
                 5689*****************************************988888888999**9999999999999988899999877615567788999985 PP

       TRI12 160 .snktkflgllivsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkkvrkreelakldwigiilvivgvslfllg 257
                  +n+ ++ gl+   +  ++t  ++p +g  l    swrwifyi + +   a+l+i   ++             kr    ++dw+g i +++    ++l 
  CTQ30624.1 133 pANRGRYQGLFGG-VFGLATV-IGPLIGGFLVQHASWRWIFYINLPLGLFALLVIGAVFHSSN----------KRS-QHQIDWLGAIYLSMALLCIILF 218
                 579******9865.5556666.89***********************9999988877766543..........333.3479*********999999999 PP

       TRI12 258 vswggkpnspwnsakviglissglgslvvfalyevygkpvrpivppalfkdtrgfvcillissimg.amnlslvi 331
                  s gg     wn  ++  +++ g+  ++ f   e +    +pi+p alf++   ++c l+   ++g ++  s++ 
  CTQ30624.1 219 TSEGGSV-HAWNDPQLWCILAFGIVGIIGFIYEERM--AAEPIIPLALFRNRSFLLCSLI-GFVIGmSLFGSVTF 289
                 9999976.68**************999988766654..578*********8766677665.44444134333333 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   6.9   1.4e-09   4.9e-06     283     384 ..      72     172 ..      49     173 .. 0.90
   2 ?   -0.2  14.5     0.099   3.6e+02     219     376 ..     261     422 ..     179     428 .. 0.78
   3 ?   -3.1   0.1      0.77   2.7e+03     179     200 ..     466     487 ..     454     494 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.4e-09
  MFS_1_like 283 lleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdlksaif 381
                   + +G   +l +a+ ++ +   l ++ +n+  ++++  L+g+  g l ++ +  v++++p+  ++++qgl+ g+ fgl + +G liGG+l ++ s ++
  CTQ30624.1  72 FGDLFGRKIVLQVAIGLFLVGSALCGLAQNMTQLVLMRGLQGLGGGGLMVISMAAVADVIPPANRGRYQGLFGGV-FGLATVIGPLIGGFLVQHASWRW 169
                 5567899999999999999999999999**********************************************9.*********************** PP

  MFS_1_like 382 lFr 384
                 +F+
  CTQ30624.1 170 IFY 172
                 997 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.099
  MFS_1_like 219 lnilknpeviifllvalilgmswgiienFlflYL.kelgasntllGslvalgvvaeiplfffaeklleklGhvkll.iiallayilrfllyaii...en 312
                 l++++n++ ++  l+ +++gms     +Fl lYL   ++a+ t +G  ++  + + + + +++ +++ ++G  +l  i++ l+ +   +l+  i   + 
  CTQ30624.1 261 LALFRNRSFLLCSLIGFVIGMSLFGSVTFLPLYLqVVKEATPTEAGLQLIPLMGGLLLTSIISGRIISRTGKYRLFpILGTLLGVTGMVLLTRItihSP 359
                 678899999999999*******************777899******999999999999**************999746676666666666666667677 PP

  MFS_1_like 313 awlvlpievLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllwdl 376
                 +w + ++    g+ +gl+  ++v  v++++p ++ +   + ++ l+ ++G+ +G  + G+++ +
  CTQ30624.1 360 LWQLYLFTGVLGAGLGLVMQVLVLAVQNAMPAQMYGVATSGVT-LFRSIGGSIGVALFGAVFTH 422
                 78888899999*********************99988877655.55899999999999998865 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.77
  MFS_1_like 179 ysallyvlaallvisllvvlil 200
                 ++a+++++a+++ ++++++  l
  CTQ30624.1 466 IHAAFLMAAGIMAVAFVLSWLL 487
                 5678888888888888776555 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   3.0     0.018        63     141     227 ..     111     218 ..      94     222 .. 0.58
   2 ?   11.9   1.0   1.4e-05      0.05     288     358 ..     261     330 ..     250     357 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.018
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxx.............xxxxxx.....xxxxxxxx RF
        OATP 141 llGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllk.......lyvdids.............eisltp.....kdprWvga 214
                 l+G+G+  ++ + ++ + D + + n   y g++  +  l  ++G l+G++l++       +y+++               +    +     ++  W+ga
  CTQ30624.1 111 LQGLGGGGLMVISMAAVADVIPPANRGRYQGLFGGVFGLATVIGPLIGGFLVQhaswrwiFYINLPLglfallvigavfhS----SnkrsqHQIDWLGA 205
                 667777777777777777777777777777666655555555555555555552222233455554466666666555432....02233234447777 PP

                 xxxxxxxxxxxxx RF
        OATP 215 WWlgflilgvlll 227
                  +l + +l ++l+
  CTQ30624.1 206 IYLSMALLCIILF 218
                 7777777776665 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.4e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 288 krllknpifllvilssvfeillvaGfitFlpkylEtqFslsaseAnlltGvvvipgaalGillgGllvkkl 358
                 + l++n+ fll +l + +  + + G +tFlp yl++  + +++eA l +   ++ g  l  +++G ++++ 
  CTQ30624.1 261 LALFRNRSFLLCSLIGFVIGMSLFGSVTFLPLYLQVVKEATPTEAGLQLI-PLMGGLLLTSIISGRIISRT 330
                 6799****************************************998842.34445556667777776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3548.96
//
Query:       CTQ30625.1  [L=215]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-13   48.7   0.1    7.6e-13   48.0   0.1    1.3  1  TetR_N     Bacterial regulatory proteins, tetR family
    0.00022   20.9   0.0       0.18   11.6   0.0    2.3  2  MerR       MerR family regulatory protein
    0.00043   20.3   0.1    0.00062   19.7   0.1    1.2  1  TetR_C_3   YcdC-like protein, C-terminal region
     0.0011   19.1   0.0     0.0019   18.3   0.0    1.4  1  TetR_C_29  Tetracyclin repressor-like, C-terminal domain
     0.0015   18.8   0.5     0.0085   16.4   0.1    2.3  3  TetR_C_11  Tetracyclin repressor-like, C-terminal domain
     0.0016   18.5   0.0     0.0035   17.5   0.0    1.5  1  TetR_C_21  Tetracyclin repressor-like, C-terminal domain
  ------ inclusion threshold ------
      0.014   15.5   0.0        4.3    7.5   0.0    2.3  2  MerR_1     MerR HTH family regulatory protein
        0.1   12.6   0.0       0.24   11.4   0.0    1.6  1  Exc        Excisionase-like protein


Domain annotation for each model (and alignments):
>> TetR_N  Bacterial regulatory proteins, tetR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.1   3.4e-16   7.6e-13       1      45 [.      29      73 ..      29      75 .. 0.95

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 3.4e-16
                HHHHHHHHHHHHHTTT--HHHHHHHHTSSHHHHHHHTSSHHHHHH CS
      TetR_N  1 IldaArelfaerGydattvreIAkrAGvskgalYryFpsKeeLle 45
                ++d A+ lfa+ G  ++++++IAk+AGv+++ l++yF+s+++L+ 
  CTQ30625.1 29 LMDIALTLFARDGAGRVSLNAIAKEAGVTPAMLHYYFSSRDALVT 73
                6899***************************************96 PP

>> MerR  MerR family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   7.8e-05      0.18       4      19 ..      49      64 ..      46      64 .. 0.91
   2 !    6.8   0.0    0.0025       5.5      15      27 ..     153     165 ..     145     169 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.8e-05
                HHHHHHTTTHHHHHHH CS
        MerR  4 evAeltGvsprtLRyY 19
                 +A+ +Gv+p +L+yY
  CTQ30625.1 49 AIAKEAGVTPAMLHYY 64
                579************9 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0025
                 HHHHHHHTTSSTS CS
        MerR  15 tLRyYEreGLipp 27 
                 t+R++ +eG+i p
  CTQ30625.1 153 TVRRWQQEGKINP 165
                 9**********55 PP

>> TetR_C_3  YcdC-like protein, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   2.7e-07   0.00062      16      96 ..      93     174 ..      78     178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.7e-07
                 -TTS-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSTTTHHHHHTHH.HHHHHHHHHHHHHHHHTTSS-S--HHHHHHH CS
    TetR_C_3  16 eeeddPaealaayiraKleisrdkPeasrlfanEilqGapllkeelkeel.kelvkekaaviqaWieegklakvdpkhLlfs 96 
                 ++ +dP+ al+  +++  +++ ++   + l+ +Ei+   p l ++++ ++ +e ++    ++++W++egk+++  +  Llf+
  CTQ30625.1  93 DHPQDPVLALTMMVETLAHMAEKNAWFAPLWMQEIIGEMPILRQHMDARFgEERFQVMLGTVRRWQQEGKINPALAPELLFT 174
                 6679********************************************994568999***************9999999986 PP

>> TetR_C_29  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   8.6e-07    0.0019       1      92 [.      98     188 ..      98     197 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.6e-07
                 HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHS-TT--TTS--SS-.THHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHHHHHHHHHTHH CS
   TetR_C_29   1 PvealrrlveftfdyhaanpefvrLvsiEnlhrgrhlkksesirelnspliekleeilerGqaagvFrpgvdaldlyllisslcffrvsnrh 92 
                 Pv al+ +ve++ +  ++n  f  L ++E + +   l+++  +r   ++ ++ +   ++r q++g + p + ++ l+++++sl ++ +s+ h
  CTQ30625.1  98 PVLALTMMVETLAHMAEKNAWFAPLWMQEIIGEMPILRQHMDARF-GEERFQVMLGTVRRWQQEGKINPALAPELLFTTVISLVLVPFSRIH 188
                 999**********************************99999998.777777777888999************************9999765 PP

>> TetR_C_11  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.69   1.5e+03      46      65 ..      69      88 ..      39     113 .. 0.59
   2 !   16.4   0.1   3.8e-06    0.0085      31      91 ..     124     181 ..     101     184 .. 0.86
   3 ?   -2.5   0.0       2.9   6.4e+03      38      55 ..     187     204 ..     179     210 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.69
   TetR_C_11 46 ealrerlleprraalravlr 65
                +al ++l+e+r   lr  + 
  CTQ30625.1 69 DALVTQLIEERFMPLRNHIS 88
                34444444444444444333 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 3.8e-06
   TetR_C_11  31 lrallaeaqrdpelaealrerlleprraalravlrrAvarGelradadvelvldlllgpll 91 
                 ++ +++e+   p l++ + +r+ e+r + +   +rr ++ G + + + +el++ ++++++l
  CTQ30625.1 124 MQEIIGEM---PILRQHMDARFGEERFQVMLGTVRRWQQEGKINPALAPELLFTTVISLVL 181
                 55666666...999****************************************9999876 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.9
   TetR_C_11  38 aqrdpelaealrerllep 55 
                 +++dp+l +  r++++  
  CTQ30625.1 187 IHSDPRLQAVNRQTIVSH 204
                 677888888777776655 PP

>> TetR_C_21  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.6e-06    0.0035      42      86 ..     144     188 ..     134     207 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.6e-06
   TetR_C_21  42 aesleekvaairaaQraGtvdaswkpedlltlvlalasawaaapa 86 
                 +e+++  + ++r+ Q++G+++++++pe l+t v++l+ + +++  
  CTQ30625.1 144 EERFQVMLGTVRRWQQEGKINPALAPELLFTTVISLVLVPFSRIH 188
                 5677777889**************************988776655 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0067        15       2      20 ..      46      64 ..      45      73 .. 0.89
   2 ?    7.5   0.0    0.0019       4.3      10      29 ..     147     166 ..     144     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0067
                EHHHHHHHHTS-HHHHHHH CS
      MerR_1  2 sigevakilgvtthtlryw 20
                s++  ak++gvt+  l+y+
  CTQ30625.1 46 SLNAIAKEAGVTPAMLHYY 64
                67889*************9 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0019
                 HTS-HHHHHHHHHHTT-S-E CS
      MerR_1  10 lgvtthtlrywekegllkpk 29 
                 ++v   t+r w++eg+++p+
  CTQ30625.1 147 FQVMLGTVRRWQQEGKINPA 166
                 5666789***********96 PP

>> Exc  Excisionase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.24      19      34 ..     151     166 ..     141     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                 HHHHHHHHHTT-EES- CS
         Exc  19 letlrrWvreglitPa 34 
                 l t+rrW +eg+i Pa
  CTQ30625.1 151 LGTVRRWQQEGKINPA 166
                 67*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1725.24
//
Query:       CTQ30626.1  [L=138]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-12   45.9   0.0    6.2e-12   45.8   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    8.2e-11   41.9   0.1    9.3e-11   41.8   0.1    1.1  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    1.9e-10   41.0   0.2    2.2e-10   40.8   0.2    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.6e-06   28.0   0.1    2.5e-06   27.3   0.1    1.3  1  FR47             FR47-like protein
     0.0004   20.5   0.0    0.00053   20.1   0.0    1.3  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase
     0.0012   19.0   0.0     0.0015   18.7   0.0    1.2  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
     0.0013   18.5   0.0     0.0019   17.9   0.0    1.5  1  PanZ             Acetyltransferase (GNAT) domain, PanZ
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.029   14.3   0.0    1.4  1  Acetyltransf_13  ESCO1/2 acetyl-transferase
      0.035   13.9   0.0      0.044   13.5   0.0    1.2  1  Acetyltransf_16  GNAT acetyltransferase, Mec-17
      0.037   14.1   0.0      0.062   13.4   0.0    1.3  1  Acetyltransf_9   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   3.5e-15   6.2e-12      46     117 .]      46     115 ..       8     115 .. 0.83

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 3.5e-15
                     EEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  46 GfisllkipdekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     G +++  i   kg+   ie l+Vs++ rg+GlGs+L++++e++a  +g+  +   v+    +a ++Y+klG+
      CTQ30626.1  46 GVMQGGLIAKRKGNWLCIEYLWVSETTRGRGLGSELMQEAEQQAQAQGCSHLL--VDTFSFQALPFYQKLGY 115
                     555555555678999**********************************8854..5555778*********8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.1   5.2e-14   9.3e-11      34     109 ..      40     118 ..      10     137 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 5.2e-14
  Acetyltransf_10  34 lvaeeggkiv.Gvielrdgs..hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnasp.yavpfYeklGFkav 109
                      +  + +g +  G i+ r+g+   i+ l V++  rg+G+g++L++++e++a+ +g + +l v+  + +a pfY+klG++  
       CTQ30626.1  40 YSRDAQGVMQgGLIAKRKGNwlCIEYLWVSETTRGRGLGSELMQEAEQQAQAQGCS-HLLVDTFSfQALPFYQKLGYQLQ 118
                      555556666634555566668999**************************999999.******999***********965 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.2   1.3e-13   2.2e-10      21      75 ..      55     116 ..      19     117 .. 0.72

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1.3e-13
                     EEES..TCTEEEEE-GGGTTSSHHHHHHH.HTT.....SEEEEEEEEETHH...HHHHHHHHTTEE CS
  Acetyltransf_7  21 slld..aeitrlaVdpeyrgkGiGraLle.aae.....kgiileqlelnae...kaikfYeklGFe 75 
                     ++ +   +i++l+V++  rg+G+G++L++ a e     +g+  +   l+++   +a++fY+klG++
      CTQ30626.1  55 KRKGnwLCIEYLWVSETTRGRGLGSELMQeA-EqqaqaQGCS-H--LLVDTfsfQALPFYQKLGYQ 116
                     33335566777*****************943.2245678875.3..222323469**********7 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   1.4e-09   2.5e-06       2      80 ..      37     118 ..      36     121 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.4e-09
                 EEEEET.TT--EEEEEEE-TTSS...EEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT-HHHHHHHHHHT-EEE CS
        FR47   2 lGlyrk.elgelaawilrkdgge...lgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvasNtpsirlyeklGfeki 80 
                 lG+y++ + g + +++++k  g    +  l v ++ r+rGlgs l ++  ++  ++g  + l+v +   ++  +y+klG+++ 
  CTQ30626.1  37 LGIYSRdAQGVMQGGLIAKRKGNwlcIEYLWVSETTRGRGLGSELMQEAEQQAQAQG-CSHLLVDTFSFQALPFYQKLGYQLQ 118
                 8****988899999***99999644478899*****************777755555.56778899999***********986 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     3e-07   0.00053      20      58 ..      56      94 ..      26     103 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3e-07
  Acetyltransf_CG 20 rkegvldfthTeVpeelrGkGiAkkLvkaalddareegl 58
                     rk++ l ++   V+e  rG+G++++L+++a ++a+++g 
       CTQ30626.1 56 RKGNWLCIEYLWVSETTRGRGLGSELMQEAEQQAQAQGC 94
                     566778889999************************986 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   8.4e-07    0.0015      58     137 ..      42     118 ..      15     128 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 8.4e-07
  Acetyltransf_4  58 drivGyaylgqfkkrakdwkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFelv 137
                      + +G +++g + kr  +w ++   ++  ++ + +glg+el++  eq +++q+   ll  ++s+  ++  f+++lG++l 
      CTQ30626.1  42 RDAQGVMQGGLIAKRKGNWLCIEYLWVS-ETTRGRGLGSELMQEAEQQAQAQGCSHLLVDTFSF--QALPFYQKLGYQLQ 118
                     45688888999999999**********7.79*******************************65..6899*******975 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.1e-06    0.0019      57      92 ..      56      91 ..       7     122 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.1e-06
        PanZ 57 ledkeaelsdlcVRevTRrRGVgsyLleearrqaPe 92
                ++++   ++ l V e TR RG gs L++ea +qa +
  CTQ30626.1 56 RKGNWLCIEYLWVSETTRGRGLGSELMQEAEQQAQA 91
                4444556899********************999844 PP

>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.6e-05     0.029       5      32 ..      61      88 ..      59     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
  Acetyltransf_13  5 cGisriWvssshRrkgiAtkLldaaren 32
                     ++i+ +Wvs++ R +g+ ++L++ a ++
       CTQ30626.1 61 LCIEYLWVSETTRGRGLGSELMQEAEQQ 88
                     67999*****************988765 PP

>> Acetyltransf_16  GNAT acetyltransferase, Mec-17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.5e-05     0.044      99     163 ..      56     122 ..      33     126 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.5e-05
                      EEE--EEEEEEEE-GGGTTSSHHHHHHHHHHHHHT--.GGGSEEES--HHHHHHHHHH.H---SEE- CS
  Acetyltransf_16  99 reveplcvldFyvheseqrkGlGkklfeamlkeekve.pkklaidrPsekllsFlekh.ynlkktvp 163
                      r+ + lc+   +v e++  +GlG++l++   ++ + +  ++l +d  s + l F +k  y+l+ ++p
       CTQ30626.1  56 RKGNWLCIEYLWVSETTRGRGLGSELMQEAEQQAQAQgCSHLLVDTFSFQALPFYQKLgYQLQMSLP 122
                      567789*********************998887776648999*************995499988776 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.4e-05     0.062      81     126 ..      68     116 ..      56     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.4e-05
                     E-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE..--SS.HHHHHTTT-E CS
  Acetyltransf_9  81 vapehrgrgvlskLlaraleemreegqplsll..fPss.ipiYrrfGye 126
                     v  + rgrg+ s+L+++a ++++++g +  l   f ++  p+Y+++Gy+
      CTQ30626.1  68 VSETTRGRGLGSELMQEAEQQAQAQGCSHLLVdtFSFQaLPFYQKLGYQ 116
                     78899*******************9766555411554425********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1053.14
//
Query:       CTQ30627.1  [L=73]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   10.8   0.0       0.12   10.7   0.0    1.0  1  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.9e-06      0.12      25      92 ..       3      69 ..       1      72 [. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.9e-06
       TRI12 25 latsadelpegyyrsprvvasfaafslnvvatyfvlqasasalpnilqdvgqsensslfstlwttgqa 92
                l+ s+  lp+gy+ sp     +  fs+ ++  ++  ++    l  il d    +n++  s   t g+a
  CTQ30627.1  3 LTISSIALPNGYFPSPL-SQNILIFSMIICLNFLRSKSKQKNLSIILTDRIMGKNENDHSHHKTRGDA 69
                6778889*********5.567889************************97666666666777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 588.85
//
Query:       CTQ30628.1  [L=374]
Description: multidrug efflux system [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-14   51.6   0.3    2.2e-13   50.0   0.3    1.8  1  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
      1e-09   39.0   1.7    4.9e-05   24.0   0.0    2.8  3  HlyD_3           HlyD family secretion protein
    1.2e-09   37.9   0.4    4.9e-09   36.0   0.3    2.0  1  HlyD             HlyD membrane-fusion protein of T1SS
    1.4e-09   37.6   1.6    2.5e-08   33.6   0.1    3.3  3  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
       0.15   11.9   0.7        1.8    8.4   0.0    2.9  3  Biotin_lipoyl    Biotin-requiring enzyme


Domain annotation for each model (and alignments):
>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.3     6e-17   2.2e-13      20     214 .]      59     282 ..      48     282 .. 0.73

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 6e-17
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....................XXXXXXXXX..XXXXXXXXXXX CS
    HlyD_D23  20 arvsarveGwveklyvnatgdkVkkGqpLaelyspelvaaqeeyllalkakkklkkke...................lleaarerL..rllgvseeqia 97 
                 a+v ++v G ++k   + +gd Vk+Gq+L++++ +   a+ +e  +alk++++l  ++                    ++ a++        v++ + a
  CTQ30628.1  59 AEVRPQVGGIIQKRLFT-EGDMVKAGQALYQIDPSSYRATWNEAAAALKQAQALVVSDcqkaqryaslvrdngvsrqDADDAASTCaqDKASVES-KKA 155
                 7899********99888.9*************888877777777777775555544445555556666666777666333333333003344444.447 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXX..XXXXXXXXX CS
    HlyD_D23  98 elektgkvqktvtvkapisGvVteknvreGqyvqpg..dtlftiadlstVWveaevyeqqlalvkv......gqkvevtvealpgktf..eGkvdyiyp 186
                 +le+ +   + +tv+api+G +   +v+ G  v+++  ++l+ti  l+t++v+      +l ++++       ++ +vt++  +g+t+  +G+++    
  CTQ30628.1 156 ALESARINLNWTTVTAPIAGRIGISSVTPGALVSADqdTALATIRGLDTMYVDLTRSSVDLLRLRKqslasnSDTLSVTLTLEDGSTYpeKGRLALTEV 254
                 89999999999**********************7651157************876555444444431111114555666666666554339******** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23 187 tvdpetRtvkvRieldNpdgkLkpgmfA 214
                  vd++t +v++R+ ++Np++ L pgmf+
  CTQ30628.1 255 AVDESTGSVTLRAIFPNPQHVLLPGMFV 282
                 ***************************7 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.4e-05     0.087       2      50 ..      61     111 ..      60     128 .. 0.80
   2 !   24.0   0.0   1.4e-08   4.9e-05       1     106 []     168     279 ..     168     279 .. 0.94
   3 ?   -2.1   0.1       1.8   6.4e+03       9      26 ..     314     331 ..     311     367 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
      HlyD_3   2 lrApvdGvvvelnveegevvqagdelleiip..pdtllveakvpaadlgsi 50 
                 +r  v+G++++   +eg++v ag++l +i p   +  + ea+ + ++++ +
  CTQ30628.1  61 VRPQVGGIIQKRLFTEGDMVKAGQALYQIDPssYRATWNEAAAALKQAQAL 111
                 78899*************************943367777777777777666 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 1.4e-08
      HlyD_3   1 tlrApvdGvvvelnveegevvqagde..lleiippdtllveakvpaadlgsik.......kkgqkvtlkldqgsdytlkgkierisptvdaktgaykve 90 
                 t++Ap++G++   +v++g  v+a +   l++i   dt+ v+++ ++ dl +++       +   +vtl+l++gs y+ kg++      vd++tg ++++
  CTQ30628.1 168 TVTAPIAGRIGISSVTPGALVSADQDtaLATIRGLDTMYVDLTRSSVDLLRLRkqslasnSDTLSVTLTLEDGSTYPEKGRLALTEVAVDESTGSVTLR 266
                 79********************887778************************9999999989999999999**************************** PP

      HlyD_3  91 vslenpekksiplkpG 106
                 + ++np   +  l+pG
  CTQ30628.1 267 AIFPNP---QHVLLPG 279
                 *****9...7777776 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.8
      HlyD_3   9 vvvelnveegevvqagde 26 
                 vv ++n  e + v+ gd+
  CTQ30628.1 314 VVDAANKVEQRTVETGDT 331
                 566666677777777765 PP

>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.3   1.4e-12   4.9e-09       3      79 ..      32     349 ..      30     350 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 1.4e-12
                 EEEEEEEEEE......................................................................................... CS
                 xxxxxxxxxx......................................................................................... RF
        HlyD   3 avfvawaala......................................................................................... 12 
                 +v+v+++ ++                                                                                         
  CTQ30628.1  32 EVGVVTLQSQpvpvvsqltgrttaslsaevrpqvggiiqkrlftegdmvkagqalyqidpssyratwneaaaalkqaqalvvsdcqkaqryaslvrdng 130
                 566777777777777777777777777777777777777777777777777777777777777777777777788888888888888888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        HlyD  13 ................................................................................................... 12 
                                                                                                                    
  CTQ30628.1 131 vsrqdaddaastcaqdkasveskkaalesarinlnwttvtapiagrigissvtpgalvsadqdtalatirgldtmyvdltrssvdllrlrkqslasnsd 229
                 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888999999999 PP

                 .....................................................EEEEEEEECEEEEEEEGCGEEECTTTSEEEEEEECTSBEEEEEEEE CS
                 .....................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  13 .....................................................etdldqvrvgqpvevrfdAfpqtktgkftgvVvgispdrvpvrvvv 58 
                                                                      + ++d++  +++++ ++++ +++++g++t+ Vv ++++++++ v++
  CTQ30628.1 230 tlsvtltledgstypekgrlaltevavdestgsvtlraifpnpqhvllpgmfvRARIDEGIMNDAILAPQQGITRDAKGDATALVVDAANKVEQRTVET 328
                 999999999999999999999999999999999999999999999999999999********************************************* PP

                 EEEETTEEEESSSS-TTEEEE CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        HlyD  59 ekaqgpyyplriglkagalvr 79 
                 +++ g+++ + +glkag++++
  CTQ30628.1 329 GDTYGDKWLVLSGLKAGDKLI 349
                 ******************986 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   7.1e-12   2.5e-08       3      49 ..      59     105 ..      56     112 .. 0.91
   2 ?    1.2   0.0     0.092   3.3e+02       3      28 ..     167     192 ..     158     200 .. 0.85
   3 ?   -1.9   0.1      0.88   3.2e+03      10      18 ..     358     367 ..     355     370 .. 0.58

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 7.1e-12
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGdvLaelDsralqlalaqaeaql 49 
                       ++ ++v G + + + ++G+ VkaG+ L+++D++ +++  + a a+l
       CTQ30628.1  59 AEVRPQVGGIIQKRLFTEGDMVKAGQALYQIDPSSYRATWNEAAAAL 105
                      5799********************************98888877776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.092
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGd 28 
                      ++++ap++Gr+    V+ G  V a +
       CTQ30628.1 167 TTVTAPIAGRIGISSVTPGALVSADQ 192
                      5899******9888888888888776 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.88
  Biotin_lipoyl_2  10 sG.rVaqlnV 18 
                      +G +V++++V
       CTQ30628.1 358 PGqTVKAVAV 367
                      4556666666 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00051       1.8       6      35 ..      63      88 ..      57      90 .. 0.50
   2 ?   -0.5   0.0       0.3   1.1e+03       3      31 ..     169     192 ..     167     199 .. 0.50
   3 ?   -2.5   0.0       1.3   4.8e+03      20      29 ..     355     364 ..     347     366 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00051
                   SSSEEEEEE.ECSESSSTTCEE-TTSEEEE CS
  Biotin_lipoyl  6 PmiGesveegvvevlvkvGdkVkagqvlae 35
                   P++G +++    + l  +Gd Vkagq l  
     CTQ30628.1 63 PQVGGIIQ----KRLFTEGDMVKAGQALYQ 88
                   44444444....355555555555555543 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.3
                    EEESSSEEEEEE.ECSESSSTTCEE-TTS CS
  Biotin_lipoyl   3 iksPmiGesveegvvevlvkvGdkVkagq 31 
                    +++P +G +         v +G  V+a+q
     CTQ30628.1 169 VTAPIAGRIGI-----SSVTPGALVSADQ 192
                    34444444444.....4455555555554 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.3
                    SSSTTCEE-T CS
  Biotin_lipoyl  20 lvkvGdkVka 29 
                    +v++G++Vka
     CTQ30628.1 355 KVAPGQTVKA 364
                    6788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2785.73
//
Query:       CTQ30629.1  [L=1035]
Description: multidrug efflux system protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1225.8  15.0          0 1225.6  15.0    1.0  1  ACR_tran   AcrB/AcrD/AcrF family
    6.6e-07   28.9  26.9    0.00031   20.2  12.3    2.4  2  SecD_SecF  Protein export membrane protein


Domain annotation for each model (and alignments):
>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1225.6  15.0         0         0       1    1021 []       2    1024 ..       2    1024 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1225.6 bits;  conditional E-value: 0
                  -HHHHHTSHHHHHHHHHHHHHHHHHHHCTSSBESSSS-S--EEEEEEE-TTC-HHHHHHHTHHHHHCTCTS-TTEEEEEEEE.TTSEEEEEEEESTT CS
    ACR_tran    1 iikffikrpifalvlaliilllGilsilslPvdalPeiapptvqvstsypGaspevvesevtqplEqalngldglkyvsSqS.seglssitltFedg 96  
                  +++ff++rp+fa+v+a++i+l+G+l+i+ lPv ++P++app+v++s++y Gas+e++e++vtq++Eq+l+gld l y sS+S s+g++sit+tFe+g
  CTQ30629.1    2 FSRFFVRRPVFAWVIAILIMLAGVLAIRTLPVGQYPDVAPPAVKISATYTGASAETLENSVTQVIEQQLTGLDHLLYFSSTSsSDGSVSITVTFEQG 98  
                  689*******************************************************************************9************** PP

                  S-HHHHHHHHHHHHHHHGGGS-HHHHHH-EEEEEEECCECEEEEEEESSSSS-HHHHHHHHHHHTHHHHHTSTTEEEEEESS.-SEEEEEEE-HHHH CS
    ACR_tran   97 tdidiArqqvqnrlqeaknkLPeevqepgiskiktssseilvlavtskdgsltktelrdlaetnikdqLsrveGVgdvqliGgsekavriwldpqkl 193 
                  td+d A++qvqn++q+a++ LP+evq+ g++++k++ss +l+lav  k ++ t  +++d + +n++d+L+rveGVg++q++G +e+a+r+w+dp+kl
  CTQ30629.1   99 TDPDTAQVQVQNKVQQAESRLPSEVQQSGVTVEKSQSSFLLILAVYDKTNRATSSDISDWLVSNMQDPLARVEGVGSLQVFG-AEYAMRVWMDPTKL 194 
                  **********************************************************************************.************** PP

                  HCTT--HHHHHHHHHHHSSB-EEEEE......TT-SB-EEEEESB---SHHHHHTSEEE.ETTSCEEEHHHCEEEEEEESSSSSEEEETTEEEEEEE CS
    ACR_tran  194 aklgltltdvvsalkeqnvnvaaGql......egqeeelliraqgqlqsaediekiivk.nqdgskvrlrDvAkVelgaeeerlaatfngkpavlle 283 
                  a++ l ++dv sa+++qnv+v+aG++      + q+ ++++raq++lq++++++ iivk ++dgs vrl DvA+Ve+g+e+++  a++n++pa++++
  CTQ30629.1  195 ASYSLMPSDVQSAIEAQNVQVSAGKIgalpssNAQQLTATVRAQSRLQTPDQFKAIIVKsQADGSVVRLSDVARVEMGSEDYTATANLNDHPAAGIA 291 
                  *******************************999*************************99************************************ PP

                  EEEETTSBHHHHHHHHHHHHHCCGGGSSTTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ACR_tran  284 vkklpganaievakavkekleeLkeslPegveivvvydrtefvrasieeVvktLleaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalg 380 
                  v ++pgana+++a+ vk k++e ++++P+g++i+++ d tef++ s+e+V +tL+eai+Lvv v++lFLqn+ratlipa+avP++llgtf vl+++g
  CTQ30629.1  292 VMMAPGANALDTATLVKSKIAEFQRQMPQGYDIAYPKDSTEFIKISVEDVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLLGTFGVLALFG 388 
                  ************************************************************************************************* PP

                  --BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  381 fslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlv 477 
                  +s+N+ltLf++vlAiGl+vDdAiVvvEn+er ++ eg++ +ea++ksm+ei galvaialvl+avflP++f+gG++G ++rqf++ti++a++lsv+v
  CTQ30629.1  389 YSINTLTLFAMVLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVTIISAMMLSVVV 485 
                  ************************************************************************************************* PP

                  HHCCHHHHHHHHS---STT-CTSHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHCS-BESS----TSEEEEEEE-STTB-HH CS
    ACR_tran  478 altltPalcallLkerkeekekkffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfvripkeflPeedegvlvtsvqlppgvsle 574 
                  altltPalc+ lL+++k + + +ff +fnrl  ++e++Y++ +   lr+ av++ ++++++++++l + ++p +flP ed+g+++++  lp+g++  
  CTQ30629.1  486 ALTLTPALCGALLSHSKPHTK-GFFGAFNRLWGRTEAGYQRRVLGGLRRGAVMMGAYALICGAMALAMWKLPGSFLPVEDQGEIMVQYTLPAGATAV 581 
                  *************99888766.8************************************************************************** PP

                  HHHHHHHHHHH.HHH.TTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTSSCCCSSSSCE CS
    ACR_tran  575 qtqkvlkqvek.ilk.ekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiqlreletlsgv 669 
                  +t++v +qv++  l+ ek++++ +f+v Gf++sg  +g+n +++f+sLk +++rk+++++++a++ r++kel ki++a ++++ p+++ +l++++g+
  CTQ30629.1  582 RTAEVRRQVTDwFLTkEKANTDVIFTVDGFSFSG--SGQNAGMAFVSLKNWSQRKGDDNTAQAIALRATKELGKIRDATLFAMTPPSVDGLGQSNGF 676 
                  ***********87777999***************..************************************************************* PP

                  EEEEEE.SSSSHHHHHHHHHHHHHHHHCCSTTEEEEEESS-S-EEEEEEEE-HHHHHHCTCSHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEE-G CS
    ACR_tran  670 rselqvklfgddleaLseaaeqllaalkelpelsdvrseqqedqpqlqveidrekaarlGvsisdindtletalggsyvndfieegrrvkvvvrlee 766 
                   +el     g+d + L+++++qllaa++++ el++vr +   + pqlqv+id++ka +lG+s+sd+ dtl++a+gg+yvndfi++gr++kv+++ e+
  CTQ30629.1  677 TFELMA-SGGTDRDSLMKLRSQLLAAANQSSELQSVRANDLPQMPQLQVDIDNNKAVSLGLSLSDVTDTLSSAWGGTYVNDFIDRGRVKKVYIQGES 772 
                  *****9.****************************************************************************************** PP

                  GGSSSGGGGCCSEEEETTSCEEEGGGTEEEEEEEE-SEEEEETTCEEEEEEEEESTTS-HHHHHHHHHHHCTT..SSTTEEEEEEHHHHHHHHHHCH CS
    ACR_tran  767 dlrsspedlkklkvrnkkgkmvplsavakieeekgpnsierengsrsvvisgnvaegdslseaeeavekiakkvklpegvtiewtgqaeqeqeasns 863 
                  d r  p+dl+k++vr +++ m p+sa+a++++++gp+s+ r+ngs++++i+g+ a+g s++ a++ +ek+a    lp+g t  w+g + qe++as++
  CTQ30629.1  773 DARAVPSDLGKWFVRGSDNSMTPFSAFATTHWQYGPESLVRYNGSAAFEIQGENAAGFSSGAAMDKMEKLADS--LPAGSTWAWSGISLQEKLASGQ 867 
                  *************************************************************************..********************** PP

                  HHHHHHHHHHHHHHHHHHHHTSSSTCHHHHTTHHHHHHHHHHHHHHTT--BSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHH CS
    ACR_tran  864 llilvalalllvflvLaalyeslsepllilltvPlalvGallalllrglelsviaqvGlilliGlavkNaillvefakelrekegksleeaileaak 960 
                  ++ l+a+++l+vfl+Laalyes+s p+++++++Pl+l+Ga la++lrgl+++v++qv l+++iGl++kNail+vefa+++ + eg+sl  a+++aa+
  CTQ30629.1  868 AMSLYAISILVVFLCLAALYESWSVPFSVIMVIPLGLLGAALAATLRGLSNDVYFQVALLTTIGLSSKNAILIVEFAESAVD-EGYSLSRAAIRAAQ 963 
                  **********************************************************************************.************** PP

                  HCHHHHHHHHHHHHHHHHHHHCT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran  961 eRLrPiLMTalaailGvlPLalstgaGselqqplgivvlgGlvtstvLtLllvPvlYvlva 1021
                  +RLrPi+MT+la+i GvlPLa++tgaG++++ ++g++++gG +t+t+L++++vP+++vlv+
  CTQ30629.1  964 TRLRPIVMTSLAFIAGVLPLAIATGAGANSRVAIGTGIIGGTLTATLLAVFFVPLFFVLVK 1024
                  **********************************************************985 PP

>> SecD_SecF  Protein export membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2  12.3   3.4e-08   0.00031      33     174 ..     340     485 ..     327     498 .. 0.80
   2 !   14.0   6.6   2.7e-06     0.024      24     180 ..     858    1013 ..     839    1021 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 3.4e-08
                 HHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH..HHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS-HHHHHHHHHH CS
   SecD_SecF  33 avlallialvliliyvalrFewrvalaaiialvhDvii..tvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkratlkeiinlsln 129
                  v+  l+  +++++ v+  F +++    i a++  v++  t gvl+l+g  ++  t+ a+   iG  v+d +vv + v+  + +++  +++e++++s+ 
  CTQ30629.1 340 DVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLlgTFGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENVER-IMRDEGLPAREATEKSMG 437
                 455666667777788888899999999999988887764589************************************65.566799***********9 PP

                 HHHHHHHHTTHHHHHHHHHHHHHHT...TTTHHHHHHHHHHTSTTTTT CS
   SecD_SecF 130 qtLtrtiltslttllvvvallllgg...dslkdfalallvGlivgtys 174
                 +     ++  l++  v + + ++gg    + ++f+++++ ++++ ++ 
  CTQ30629.1 438 EISGALVAIALVLSAVFLPMAFFGGstgVIYRQFSVTIISAMMLSVVV 485
                 987766666666667778999999977445689999998888877665 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2.7e-06
                  HHHHHHHHHHHHHHH.HHHHHHHHHHHHHT-.HHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH--SS CS
   SecD_SecF   24 svskelaekavlall.ialvliliyvalrFe.wrvalaaiialvhDviitvgvlsllgievdlatvaalLtiiGYSvndtvvvfdrvrenlrkkkra 118 
                  s+ ++la   +++l  i+++++++ +a  +e w+v++++i+ +   ++ ++ +  l g+  d+ + +alLt iG S ++ +++ +  +  + +    
  CTQ30629.1  858 SLQEKLASGQAMSLYaISILVVFLCLAALYEsWSVPFSVIMVIPLGLLGAALAATLRGLSNDVYFQVALLTTIGLSSKNAILIVEFAESAVDE--GY 952 
                  566777776666665156677778888888769**************9999999999***************************988888666..88 PP

                  -HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHTTTTHHHHHHHHHHTSTTTTTHHHHHH CS
   SecD_SecF  119 tlkeiinlslnqtLtrtiltslttllvvvallllggdslkdfalallvGlivgtyssifias 180 
                  +l +++ ++ ++ L   ++tsl  +  v+ l + +g    +  +a+  G+i gt+++ ++a 
  CTQ30629.1  953 SLSRAAIRAAQTRLRPIVMTSLAFIAGVLPLAIATGAGA-NSRVAIGTGIIGGTLTATLLAV 1013
                  9999999****************9999****99988654.5577888999999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1035 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1075  (0.0599587); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.44
# Mc/sec: 7051.58
//
Query:       CTQ30630.1  [L=454]
Description: Outer membrane protein OprM [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-49  167.9  24.3    1.7e-28   99.8   3.4    2.0  2  OEP       Outer membrane efflux protein
  ------ inclusion threshold ------
      0.032   13.9   0.8       0.25   11.0   1.2    2.0  2  YkyA      Putative cell-wall binding lipoprotein
      0.072   13.3   5.5        3.2    8.0   0.1    3.3  3  FliJ      Flagellar FliJ protein


Domain annotation for each model (and alignments):
>> OEP  Outer membrane efflux protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2  13.0   1.9e-24   1.1e-20       2     188 .]      58     240 ..      57     240 .. 0.95
   2 !   99.8   3.4   2.8e-32   1.7e-28       8     175 ..     271     437 ..     267     450 .. 0.94

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 1.9e-24
         OEP   2 dellalalennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqle 100
                   ++++al+ n d+++a a+ieaa+a++ + +a+ +Pt+++ +s  ++   ++g    ++ +    g+  s++l  +gk+++  +aa+    a+e + +
  CTQ30630.1  58 KKVVSIALNSNRDVQKALADIEAARAQYGETRASLFPTVDAELSHTRSKTVASGLSSASQAD----GAVSSFELDLFGKNQSLSRAARETWLASEFTAQ 152
                 56899***********************************************9999999987....56666666666********************** PP

         OEP 101 qarqqlrlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqqlqlaraqLeyllg 188
                 ++r++ ++++ +a+  l + + +l+la++++++a    +++ ++ ++G++s+ dv +a++ ++qara+ a++++ +++ ++++++l g
  CTQ30630.1 153 NTRLTMIADLTTAWVTLATDNSNLALAQQTMDSAANSRNIVARQMAVGTASAGDVSSAESVYQQARASVASYRTLVAQDKNAINLLAG 240
                 ****************************************************99******************************9977 PP

  == domain 2  score: 99.8 bits;  conditional E-value: 2.8e-32
         OEP   8 alennpdlkaaeaeieaaeanlkaakaeflPtlslsgsygyegngsegggddggtgttsvgltlsqplfdggkrrarvkaakaqleaaeaqleqarqql 106
                 +l ++pd+++ae+++++a+a++ aa+a+f+P++sl++s g  +++ ++ +  g++ + s+  ++s+plf+gg++ a+++ a+a+++   a++e+++q+ 
  CTQ30630.1 271 VLLRRPDIQEAEHNLKSANADIGAARANFFPSISLTASAGVGSDSLSSLFSHGMQVW-SFAPSISLPLFTGGSNLAQLRYAEAEKKGLIATYEKSIQSA 368
                 6778*****************************************999998888777.9**************************************** PP

         OEP 107 rlevaqaylqlllakeqlelaeealklaekalelaearykaGlislldvlqaqvrllqaraelaeaeqq 175
                   +va a+++ +++ e+l+++++++++ +  l++a ++y+aG  ++l+vl+aq+ l +a+ +l++ +q 
  CTQ30630.1 369 FKDVADALARRETLSEELDAQRQYVAAEQTSLDIAMKSYQAGVGDYLSVLTAQRTLWSAKTTLLSLQQT 437
                 *****************************************************************9986 PP

>> YkyA  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.18   1.1e+03     109     142 ..     209     242 ..     202     253 .. 0.80
   2 ?   11.0   1.2   4.3e-05      0.25      65     136 ..     353     426 ..     344     444 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.18
        YkyA 109 ameeryeaydklykaYkealeldkeLYemLkkee 142
                 + e+ y++  + +++Y +++++dk+  ++L  e 
  CTQ30630.1 209 SAESVYQQARASVASYRTLVAQDKNAINLLAGET 242
                 5567788888889999999999998877777765 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 4.3e-05
        YkyA  65 eReellekekesieeakeefekikeeieei..edeelkkeaeelieameeryeaydklykaYkealeldkeLYe 136
                 e++ l++++++si++a + + ++ +  e +  e +++++ + + +++++   ++y++ + +Y ++l+++++L +
  CTQ30630.1 353 EKKGLIATYEKSIQSAFKDVADALARRETLseELDAQRQYVAAEQTSLDIAMKSYQAGVGDYLSVLTAQRTLWS 426
                 77889*********************99996666699999999999*************************986 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.19   1.2e+03      16      48 ..      70     102 ..      57     143 .. 0.63
   2 ?    8.0   0.1   0.00054       3.2      47     102 ..     179     234 ..     147     239 .. 0.83
   3 ?    5.6   0.6    0.0029        17      28      84 ..     358     409 ..     343     417 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.19
        FliJ  16 qaeekleeleqyrqeyqkqlsgeaqglsaaelr 48 
                 + ++ l+ +e  r++y +  ++ + +++a+  +
  CTQ30630.1  70 DVQKALADIEAARAQYGETRASLFPTVDAELSH 102
                 345556666666666655555555555555555 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00054
        FliJ  47 lrnyqafisaldeaiaqqkqelaqaekqvekareewqearqerkklekLkerekke 102
                  +++    ++ ++ +a+q+ + + +  +v+ a++ +q+ar  + ++++L ++ k++
  CTQ30630.1 179 AQQTMDSAANSRNIVARQMAVGTASAGDVSSAESVYQQARASVASYRTLVAQDKNA 234
                 555666666778889999999999999***********************999876 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0029
        FliJ  28 rqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqvekareewqe 84 
                 ++ y+k++++++      +     a +++l e+++ q+q +a  +  ++ a++ +q+
  CTQ30630.1 358 IATYEKSIQSAF-----KDVADALARRETLSEELDAQRQYVAAEQTSLDIAMKSYQA 409
                 567788888888.....8888888889999999999999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3358.91
//
Query:       CTQ30631.1  [L=387]
Description: Drug resistance transporter, Bcr/CflA subfamily [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-47  160.8  44.8    4.1e-47  160.8  44.8    1.4  1  MFS_1        Major Facilitator Superfamily
    8.2e-11   41.8  31.8    1.1e-10   41.4  31.8    1.1  1  MFS_4        Uncharacterised MFS-type transporter YbfB
    4.3e-10   39.0   8.1    4.3e-10   39.0   8.1    2.2  2  Sugar_tr     Sugar (and other) transporter
    0.00092   17.7  27.5     0.0013   17.3  27.5    1.1  1  MFS_3        Transmembrane secretion effector
  ------ inclusion threshold ------
       0.08   13.0   0.0       0.15   12.1   0.0    1.4  1  S10_plectin  Plectin/S10 domain
        4.8    7.7   7.8         32    5.1   0.2    4.0  3  ATP_synt_H   ATP synthase subunit H


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8  44.8   1.4e-50   4.1e-47       8     353 .]      19     352 ..      12     352 .. 0.90

  Alignments for each domain:
  == domain 1  score: 160.8 bits;  conditional E-value: 1.4e-50
       MFS_1   8 salarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpa 105
                   l  ++++palp  ++++l+++ ++ +l lt+  +g ++++l++G+lsdr+Gr + l l+lllf+++++++++ +    +l+v r+lqG++++++  +
  CTQ30631.1  19 GPLCTDFYLPALP-EITQQLQATSTQTQLSLTAALIGLGLGQLFFGPLSDRIGRLKPLALSLLLFIFSSAMCAL-TRDInMLIVWRFLQGFAGAGGSVL 115
                 566678899****.9*****************************************************777776.55555******************* PP

       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvpawkall 204
                 + ++++d + ++  ++ ++ll++ ++++++l p+lgg++++++ Wr +f+ +a+++ +++v+ l+ l+e++p+ +  +++++             + +l
  CTQ30631.1 116 SRSIARDKYQGTLLTQFFALLMTVNGIAPVLSPVLGGYVITAFDWRILFWTMAAIGGVLLVMSLAILRETRPATAAHASRQR----P-------GQPVL 203
                 *************************************************************999999999999999999999....3.......44455 PP

       MFS_1 205 kdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavl 302
                 k++ ++ ++li +++++  fs++ + +++ +q+ +g+s +++ +ll++l +++ +i+a++++rl++r++++r l  +l l++ +a++++l+a+ + +vl
  CTQ30631.1 204 KNRRFLrFCLIQAFMMAGLFSYIGSSSFV-MQSEYGMS-AMQFSLLFGLNGIGLIIAAMIFSRLARRFSAERLLRGGLTLAVSCAAIMLLFAWLHLPVL 300
                 56666557999999999899999999999.6*******.8*********************************************************** PP

       MFS_1 303 lllvlvliGfglgfvfpsllalasdlappeeagtasglfntags.lggalgp 353
                 +l++l++    ++ +++ + a a++ + + ++gtas+l++t+   +gg+ +p
  CTQ30631.1 301 ALVGLFFTVSLMSGISTVAGAEAMSAVDAAQSGTASALMGTLMFvFGGIAAP 352
                 *9988885557777788888888888899***********666637777776 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4  31.8   3.6e-14   1.1e-10      12     336 ..      26     356 ..      17     381 .. 0.79

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 3.6e-14
       MFS_4  12 ytpiLPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlr.llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlah 109
                 y p LP++ +++q + +q  l  +a ++G  +G l++   ls +  Rl+ l  +ll+   + + +alt+ + +++++Rfl G a+A   v+  s++  +
  CTQ30631.1  26 YLPALPEITQQLQATSTQTQLSLTAALIGLGLGQLFF-GPLSDRIGRLKpLALSLLLFIFSSAMCALTRDINMLIVWRFLQGFAGAGGSVLSRSIARDK 123
                 88*********************************88.8899999999999999999999*************************************** PP

       MFS_4 110 aaaarrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalreasaaaeaa..ka..eqkslpllalllaYglaG 204
                  + +   +  all    G+  ++s +l   + +++ ++  l + +a++  vll++++++l++++++ a++a++++  ++  +++ +  + l+ a+ +aG
  CTQ30631.1 124 YQGTLLTQFFALLMTVNGIAPVLSPVLGGYVITAF-DWRILFWTMAAIGGVLLVMSLAILRETRPATAAHASRQRpgQPvlKNRRFLRFCLIQAFMMAG 221
                 *******************9999988876655555.555667778889999999999888866655555554443113311344445556667788888 PP

       MFS_4 205 .fGYiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaalliea..vgvllsllspsplglivssvllGltflaitalv 300
                  f Yi    F+++   + + +a++ +ll  l G++ i+++ +  r+a+r  ++r+l+  l + +  ++++l  ++  + +l++ ++ + +  +  ++ v
  CTQ30631.1 222 lFSYIGSSSFVMQ--SEYGMSAMQFSLLFGLNGIGLIIAAMIFSRLARRFSAERLLRGGLTLAVscAAIMLLFAWLHLPVLALVGLFFTVSLMSGISTV 318
                 779*******866..5668999999*******************************9876655500555555666666677777788888888888877 PP

       MFS_4 301 lqlarelappat..rrllglm.TasfgigQilGpllasl 336
                   +    a +a    ++ +lm T++f  g i++pl+ +l
  CTQ30631.1 319 AGAEAMSAVDAAqsGTASALMgTLMFVFGGIAAPLA-GL 356
                 7766666666553456677777999*****999975.44 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   8.1   1.4e-13   4.3e-10      29     194 ..      25     185 ..      12     207 .. 0.79
   2 ?   -8.7  18.2         6   1.8e+04      35     184 ..     234     378 ..     213     381 .. 0.69

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.4e-13
                 HHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  29 aknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyi 127
                 ++   l + +++ +++s+++ l++ ++l+G  +G+lf+g+l+dr+GR k l+ + +lf+ +++++a++     + +liv R+l G++  + svl+    
  CTQ30631.1  25 FYLPALPEITQQLQATSTQTQLSLTAALIGLGLGQLFFGPLSDRIGRLKPLALSLLLFIFSSAMCALTR---DINMLIVWRFLQGFAGAGGSVLS---- 116
                 555556666777788999***************************************************...9*************999999887.... PP

                 HTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHH.HHHHHHGGGS--- CS
    Sugar_tr 128 sEiApkklRgalvslyqlaitfGilvaaifglgl.nktsnadgwrillglqlvpa.llllilllflPES 194
                   iA +k+ g+l + +   + +   +a ++  +l  ++  a  wril++  +++  +ll++ l  l+E+
  CTQ30631.1 117 RSIARDKYQGTLLTQFFALLMTVNGIAPVLSPVLgGYVITAFDWRILFWTMAAIGgVLLVMSLAILRET 185
                 5699******998877655554444555555555344444677*****987777615555555667776 PP

  == domain 2  score: -8.7 bits;  conditional E-value: 6
                 --SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHH..HHHHHHHHHHHHHTTS CS
    Sugar_tr  35 sksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGig..vGlasvlvPmyisEiA 131
                 +++++    s+++ +l++++  +G ii +++++ l+ rf+    l  + +l+v +a+++ +       ++ +    lvG++  v l s+++++  +E  
  CTQ30631.1 234 QSEYG---MSAMQFSLLFGLNGIGLIIAAMIFSRLARRFSAERLLRGGLTLAVSCAAIMLLFA-----WLHLPVLALVGLFftVSLMSGISTVAGAEAM 324
                 33333...26789**************************************999999999988.....3333333444543114445555555555543 PP

                 ...-SCCHHHHHH.HHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHH CS
    Sugar_tr 132 ...pkklRgalvs.lyqlaitfGilvaaifglglnktsnadgwrillglqlvpalll 184
                     ++  g+    +  l+ +fG + a   glg +++ +   + + +++++++alll
  CTQ30631.1 325 savDAAQSGTASAlMGTLMFVFGGIAAPLAGLGGETMLK---MSLAMAICYLLALLL 378
                 223333344444314468888999999999988888888...888888888888665 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3  27.5   4.2e-07    0.0013      60     361 ..      57     354 ..      33     382 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.2e-07
       MFS_3  60 llsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginiaRsvGPAl 158
                 l  ++ G l+D + r k l    ll + +s++ +++  +++l +w  l    ++g G ++ +   + +  +  +   + +  aL      ia    P l
  CTQ30631.1  57 LGQLFFGPLSDRIGRLKPLALSLLLFIFSSAMCALTRDINMLIVWRFLQ-G-FAGAGGSVLS---RSIARDKYQGTLLTQFFALLMTVNGIAPVLSPVL 150
                 55678899*************************************9885.3.4566666665...4577888899999999998877677999****** PP

       MFS_3 159 gGvlvaavGaalaf.avnalsylaliv..allrwkrevrksslprEkllealraglRftaasreikavlvRaalFglsasavlaLLPlvardqldgdal 254
                 gG +++a+   + f +++a+  + l++  a+lr  r +++ +  r +  + +    Rf +    i+a ++ +   ++ +s+      +v + + +  a+
  CTQ30631.1 151 GGYVITAFDWRILFwTMAAIGGVLLVMslAILRETRPATAAHASRQRPGQPVLKNRRFLRFC-LIQAFMMAGLFSYIGSSS------FVMQSEYGMSAM 242
                 *****9998765552678887776665126677778888899999999**********9986.466666665555555554......589********* PP

       MFS_3 255 vyGillgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalasslwvavlvlllgGaaWital....stlnvavqlav.PrWvvgRalavY 348
                  + +l+g  G+G i++a++ srL +r+s+erl++   ++lA+ ++++ l   +w+ ++vl+l G  + ++l    st+ +a  ++   +   g a a+ 
  CTQ30631.1 243 QFSLLFGLNGIGLIIAAMIFSRLARRFSAERLLRGG-LTLAVSCAAIMLL-FAWLHLPVLALVGLFFTVSLmsgiSTVAGAEAMSAvDAAQSGTASALM 339
                 *********************************975.3445554444443.346666666666654443331111333333333320223334444444 PP

       MFS_3 349 lt..vlaGglaaGsl 361
                  t   ++Gg+aa  +
  CTQ30631.1 340 GTlmFVFGGIAAPLA 354
                 331045677777544 PP

>> S10_plectin  Plectin/S10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     5e-05      0.15      51      91 ..     152     192 ..     139     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5e-05
                  TSEEEEEETTEEEEEE-HHHHHHHHHHHXXXXSXHHHHHXX CS
  S10_plectin  51 gyvkeqfaWrhyYytLtneGieylreylhlpeeivPatlkk 91 
                  gyv + f Wr +++t+   G   l   l++ +e+ Pat  +
   CTQ30631.1 152 GYVITAFDWRILFWTMAAIGGVLLVMSLAILRETRPATAAH 192
                  8************************************9876 PP

>> ATP_synt_H  ATP synthase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.17   4.9e+02       8      39 ..     164     219 ..     160     223 .. 0.59
   2 ?    5.1   0.2     0.011        32      10      50 ..     256     296 ..     245     297 .. 0.86
   3 ?    2.7   0.6     0.058   1.7e+02       3      41 ..     338     372 ..     336     377 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.17
                 HHHHHHTCSCSSS-S.........................TTHHHHHHHHHHHHHH CS
  ATP_synt_H   8 ifavlgvvatfvvpkg........................enrglirvlviltavc 39 
                 ++ ++++ ++++v +                         +nr+++r+++i ++++
  CTQ30631.1 164 FWTMAAIGGVLLVMSLailretrpataahasrqrpgqpvlKNRRFLRFCLIQAFMM 219
                 44444444443333222233344455555556667777779999999999988765 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.011
                 HHHHTCSCSSS-S.TTHHHHHHHHHHHHHHHHHTCHHTSSS CS
  ATP_synt_H  10 avlgvvatfvvpkgenrglirvlviltavccWlfWlcvYla 50 
                 ++++++++ ++++ + ++l+r  ++l++ c  ++ l+++l+
  CTQ30631.1 256 IIAAMIFSRLARRFSAERLLRGGLTLAVSCAAIMLLFAWLH 296
                 55666777889999999**********************98 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.058
                 HHHHHHHHHHHTCSCSSS-S.TTHHHHHHHHHHHHHHHH CS
  ATP_synt_H   3 lvgtiifavlgvvatfvvpkgenrglirvlviltavccW 41 
                 l+gt++f++ g++a++    g  ++++ ++  l+++ c+
  CTQ30631.1 338 LMGTLMFVFGGIAAPLAGLGG--ETMLKMS--LAMAICY 372
                 789*********999766665..3333333..4444455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 2768.28
//
Query:       CTQ30632.1  [L=300]
Description: putative PTS component; possibly regulatory [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-08   33.0   1.7    7.7e-08   32.4   0.4    2.0  2  SIS_2     SIS domain
    7.1e-07   29.1   1.9    3.1e-06   27.1   0.1    2.4  2  SIS       SIS domain
     0.0018   18.0   1.4      0.098   12.5   0.1    3.2  3  UBA_4     UBA-like domain


Domain annotation for each model (and alignments):
>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.4   1.3e-11   7.7e-08      17     133 ..      46     163 ..      32     167 .. 0.78
   2 ?   -3.1   0.0       1.2   7.2e+03       9      32 ..     225     248 ..     221     253 .. 0.68

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.3e-11
                 SHHHHHHHHHHHHHHHHTT--EEEEESGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST...THHHHHTT-TTHHHHHHHHTT--TT-EEEEE-SS- CS
       SIS_2  17 qaeaiekaaeliadslenggkvlvfGsGhSaalaeelaaragglaeferialpalalhtda.eatkssalerdegyakqilrlvrlkpgDvLlviSnsG 114
                    +i+++++ +a++l++gg+++  G+G S  l +  a ++   +++++     ++    +  +++ +++e  +  +   l++ +++++DvL+ + +sG
  CTQ30632.1  46 YLPQIAEVVDKVAAALQAGGRLIYIGAGTSGRLGILDASECPPTFGTRPEQVVGIIAGGHKaILSAVENVEDNKAQGAMDLQNLNFSNRDVLVGLAASG 144
                 55789*************************97777777777777777666666665555442566666666666666667888999************* PP

                 -SHHHHHHHHHHHHHT-EE CS
       SIS_2 115 nnavvveaaeaakergmkv 133
                 + + v+ a+e+a+++ + v
  CTQ30632.1 145 RTPYVIGAMEYAHSQNAFV 163
                 *************998765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.2
                 HHHHHHHHSHHHHHHHHHHHHHHH CS
       SIS_2   9 ilerivetqaeaiekaaeliadsl 32 
                 ++  +++t+a+ ie+ + +++++ 
  CTQ30632.1 225 LMVDVEATNAKLIERQVSIVMEAT 248
                 555667777777777777777765 PP

>> SIS  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2     0.079   4.7e+02       6      18 ..      65      77 ..      60      79 .. 0.79
   2 !   27.1   0.1   5.2e-10   3.1e-06      41     128 ..     121     210 ..     108     213 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.079
                SEEEEEESHHHHH CS
         SIS  6 kriyvlGaGtsya 18
                 r++++GaGts+ 
  CTQ30632.1 65 GRLIYIGAGTSGR 77
                499********86 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 5.2e-10
                 HHHHHTGGGG-STTCEEEEEESSSHHHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEEEECHC..SSSHCHHHHHHHHHHHHH CS
         SIS  41 selkhgvlalideddlvilisfsgetkdlvaaaelakergakiiaITdskgsplareadlalyinaepet..lvastksltaqlaaldal 128
                    ++ +  + +++d+++ ++ sg+t+ ++ a e+a++++a + ++ ++++  +a+ ad+a++  ++pe+  +   +k+ taq ++l++l
  CTQ30632.1 121 QGAMDLQNLNFSNRDVLVGLAASGRTPYVIGAMEYAHSQNAFVAIVSCNPHGEMAQLADVAITPMVGPEVvtGSTRLKAGTAQKLVLNML 210
                 445677788999**********************************************************88888889999999999887 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.12     7e+02       5      18 ..     160     175 ..     158     182 .. 0.80
   2 !   12.5   0.1   1.6e-05     0.098       8      33 ..     245     270 ..     238     276 .. 0.85
   3 ?    2.5   0.1     0.022   1.3e+02      12      29 ..     276     293 ..     271     299 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.12
       UBA_4   5 aqFqaiTGade..ekA 18 
                 + F+ai ++++  e A
  CTQ30632.1 160 NAFVAIVSCNPhgEMA 175
                 67*******9866544 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 1.6e-05
       UBA_4   8 qaiTGadeekArqlLeannWdLerAi 33 
                 ++ T +d+++A++ Lea++ +  +Ai
  CTQ30632.1 245 MEATDCDRATAQKALEACGRHCKTAI 270
                 899***************98888887 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.022
       UBA_4  12 GadeekArqlLeannWdL 29 
                   + ++A++lL  nn+ +
  CTQ30632.1 276 DLSAAEAQSLLAKNNGYI 293
                 56899**********855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2157.57
//
Query:       CTQ30633.1  [L=477]
Description: putative fused PTS enzymes: IIB component; IIC component [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-33  116.5  35.4    1.3e-33  116.5  35.4    1.9  2  PTS_EIIC  Phosphotransferase system, EIIC
    9.5e-13   47.4   0.1    1.7e-12   46.6   0.1    1.5  1  PTS_EIIB  phosphotransferase system, EIIB
  ------ inclusion threshold ------
       0.21   11.5   0.1       0.48   10.3   0.0    1.6  2  GSAP-16   gamma-Secretase-activating protein C-term


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5  35.4   2.1e-37   1.3e-33       3     324 .]     122     404 ..     120     404 .. 0.87
   2 ?   -3.8   4.1      0.83     5e+03      87     213 ..     413     457 ..     405     470 .. 0.35

  Alignments for each domain:
  == domain 1  score: 116.5 bits;  conditional E-value: 2.1e-37
    PTS_EIIC   3 gfmlpiplliagGillglgnlpnssdlkglss.....lgvqtilsslaeilkqagnavfanLpllfaigiayglakggkgvaglagligllafnllaai 96 
                 +f++ ip +ia G+llg++ l +    + + +     +  + +++     +k+++++ f++L++l+++++ +++  gg gv g+ ++  ++     +a+
  CTQ30633.1 122 IFTPLIPGFIAVGLLLGFATLAE---QVFVLEnahpnASLVALIG----YMKVFSKGMFTFLSILIGYNAQKAF--GGSGVNGAIIASLFVLGYNPEAT 211
                 89******************333...2222222334555555666....9************************..99999955555555554432222 PP

    PTS_EIIC  97 svlllaagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalglll 195
                        +     +a+i+ ++  +    g ii +l+aa+l +++e+ +++ +P +l+++++++ + +i++ v+++v+++++++++ ++++++++     
  CTQ30633.1 212 -------S---GFYAGISTFFGHGIDPRGNIIGVLIAAILGAWVERQVRRVMPANLDMILTSAVTLLIMGAVTFTVIMPIGGWLFTGMSWLFLH----- 295
                 .......2...36999********************************************************************9999999977..... PP

    PTS_EIIC 196 ggsgsllgvlifgflerllipfGlHhafiapfwftsa.ggslaianqqlygagkeaahiltgefvsvmfGgpgatlalyiaaflekkskqkkllgsaal 293
                  ++g+ +g++++++l+ l ++fG+H++f+++   ++  +g++                     f+  +++g+g+  a+++ ++ +k+   +++ +++a+
  CTQ30633.1 296 -LNGNPFGSAVLAGLFLLAVMFGVHQGFVPVYFALVDaQGFNSL-------------------FPILAMAGAGQVGAALALFWRAKRDSLLRTQIKGAI 374
                 .67778***********************998777654566666...................999********************************* PP

    PTS_EIIC 294 tpflfGItepleFgfpfvlnlllfipallag 324
                 +p+++GI epl++g+ +  +++ f++a+l+g
  CTQ30633.1 375 IPGFLGIGEPLIYGVTLPRMKP-FVTACLGG 404
                 **********************.*****998 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.83
    PTS_EIIC  87 llafnllaaisvlllaagalasakasilgiktlstgvfgaiivgllaaylynkfeknitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiq 185
                 l                                                                                     +++++l ++  + 
  CTQ30633.1 413 L-------------------------------------------------------------------------------------IAWLGLPVGLNTV 426
                 2.....................................................................................2333333333333 PP

    PTS_EIIC 186 gglnalg...lllggsgsllgvlifgflerl 213
                  g + l+   l+  gsg ++g++++++  ++
  CTQ30633.1 427 FGPSGLValpLMTSGSGIYAGMAVYAGGLAV 457
                 3333322222223344444444444433333 PP

>> PTS_EIIB  phosphotransferase system, EIIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.1   2.9e-16   1.7e-12       2      34 .]      11      43 ..      10      43 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 2.9e-16
                HHHHHH-.GGGEEEEEE-SSEEEEEES-GGGS- CS
    PTS_EIIB  2 eIldalGGkdNIesvthCaTRLRltlkDaskvd 34
                +Il+++GG+ N+  + +C+TRLRltl+D+s++d
  CTQ30633.1 11 RILAHVGGAANVAQAGNCMTRLRLTLRDESLAD 43
                6*****************************998 PP

>> GSAP-16  gamma-Secretase-activating protein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   8.1e-05      0.48      31      75 ..     104     148 ..      73     149 .. 0.83
   2 ?   -4.1   0.0       2.4   1.4e+04      55      65 ..     333     343 ..     333     344 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.1e-05
     GSAP-16  31 eelalFhllerllealeelafPlPpgFhslftvLGvrcLplstfl 75 
                  + +  + ++++l    ++  Pl pgF    ++LG+ +L  ++f+
  CTQ30633.1 104 LKGRQTSAVQKFLAKFATIFTPLIPGFIAVGLLLGFATLAEQVFV 148
                 55555677899********************************97 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.4
     GSAP-16  55 pgFhslftvLG 65 
                 +gF+slf +L+
  CTQ30633.1 333 QGFNSLFPILA 343
                 79*****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3405.51
//
Query:       CTQ30634.1  [L=345]
Description: conserved hypothetical protein; putative inner membrane protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-40  137.6  40.7    1.8e-20   73.5  20.2    2.0  2  EamA          EamA-like transporter family
  ------ inclusion threshold ------
        1.5    8.9   6.9       0.41   10.7   0.7    3.0  3  QCR10         Ubiquinol-cytochrome-c reductase complex subuni


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4  12.5   1.8e-23   1.6e-19       2     137 .]      51     190 ..      50     190 .. 0.96
   2 !   73.5  20.2     2e-24   1.8e-20       3     136 ..     203     335 ..     201     336 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 1.8e-23
        EamA   2 lgillallaalfwaiyfvlskil..lrkvspltltfvrfliagillliiallkegkl..aklslkdwllllllgllgtvlafllffyalkktsasnasl 96 
                 +g+l +l+aa++w++++v+++ +   +++s+ +lt+ r+l+ag++ll++ ++++ ++     +++d l+ll+++l+g + +++ f++ ++k++a++a++
  CTQ30634.1  51 KGMLNVLIAAVLWGSSGVCAQFImqESQMSSPFLTMTRLLFAGLILLMLGFVHGDRIfrVLQNRRDALSLLFFSLFGALTVQFTFLMTIEKSNAATATV 149
                 799******************99555667999*************************988999999********************************* PP

        EamA  97 itslePvftlilsvlllgekltlkqllgivlillGvllill 137
                 +++l+P +++ + +l  + ++t + l +i+ +l+G++l+++
  CTQ30634.1 150 LQFLSPTIIVAWFALARKARPTPLVLGAICTSLAGTFLLVT 190
                 **************************************985 PP

  == domain 2  score: 73.5 bits;  conditional E-value: 2e-24
        EamA   3 gillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsle 101
                 ++++ +++a+  a+y+++   l++++ +l ++++++l++g++ll+++  ++  + + + + +l++++l ++gt l+f+l++ + +k++ ++a++++  e
  CTQ30634.1 203 ALFWGIASAFAAAFYTTYPSTLIARYGTLPIVGWSMLFGGAMLLPFYGGQGTDF-VVNGSLLLAFFYLVVIGTSLTFSLYLNGAQKIGGAKAGILSCAE 300
                 5789**************************************************.999999************************************** PP

        EamA 102 PvftlilsvlllgekltlkqllgivlillGvllil 136
                 P+ +++ls lllg ++tl ++lg++lil++v+li 
  CTQ30634.1 301 PLSSALLSLLLLGITFTLPDWLGTLLILASVVLIA 335
                 *********************************96 PP

>> QCR10  Ubiquinol-cytochrome-c reductase complex subunit (QCR10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.11   9.6e+02       8      28 ..      52      72 ..      46      77 .. 0.71
   2 ?   10.7   0.7   4.6e-05      0.41       8      31 ..     195     218 ..     191     220 .. 0.90
   3 ?   -3.1   0.1      0.98   8.8e+03      17      23 ..     238     244 ..     228     246 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.11
       QCR10  8 tltrygptlalfGgaagvavl 28
                 ++++ + ++l+G + ++a +
  CTQ30634.1 52 GMLNVLIAAVLWGSSGVCAQF 72
                5678889999**987766654 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 4.6e-05
       QCR10   8 tltrygptlalfGgaagvavlfft 31 
                 t+++++p + ++G a+++a++f+t
  CTQ30634.1 195 TTLSISPAALFWGIASAFAAAFYT 218
                 567899*****************8 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.98
       QCR10  17 alfGgaa 23 
                 +lfGga 
  CTQ30634.1 238 MLFGGAM 244
                 7888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2599.93
//
Query:       CTQ30635.1  [L=96]
Description: conserved exported hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1182  (0.0659267); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 719.03
//
Query:       CTQ30636.1  [L=288]
Description: putative dehydrogenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-17   63.6   0.1    2.6e-17   62.5   0.1    1.6  1  DUF1932          Domain of unknown function (DUF1932)
    6.1e-09   36.2   0.0    1.3e-08   35.1   0.0    1.6  2  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
    0.00041   20.9   0.6     0.0025   18.4   0.1    2.5  3  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.063   13.5   0.2       0.16   12.2   0.0    1.9  2  NAD_binding_11   NAD-binding of NADP-dependent 3-hydroxyisobu
      0.078   13.2   0.0       0.16   12.3   0.0    1.5  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.12   11.9   0.0       0.19   11.2   0.0    1.3  1  Uroplakin_II     Uroplakin II
       0.12   12.3   0.4        1.5    8.8   0.4    2.4  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
       0.18   11.5   1.0       0.39   10.5   1.0    1.5  1  HET-S            N-terminal small S protein of HET, non-prion


Domain annotation for each model (and alignments):
>> DUF1932  Domain of unknown function (DUF1932)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.1   1.2e-20   2.6e-17       1      69 [.     189     260 ..     189     261 .. 0.94

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 1.2e-20
                 HHHTT-HHHHHHHHHHHS..STHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS--HHHHHHHHHHHH CS
     DUF1932   1 AhrlGVldelldeleesl..pallar.aergltgmppkAyRwveEMeeiaetlaeeglepqmfraiaevyrl 69 
                 A+++GV++e+l++l+ s+   ++     +++++++++++ R+ eEMee+ +tl+++g ++ m++aia+ +r+
  CTQ30636.1 189 AREYGVEEEVLSSLHHSFpsLGWTGAfPDYLISRVAEHGIRRSEEMEEVVKTLRDVGSAGIMSEAIAKSQRQ 260
                 89****************7777776669****************************************9997 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   5.9e-12   1.3e-08       1     136 [.       3     139 ..       3     157 .. 0.77
   2 ?   -2.5   0.0       2.3   5.1e+03      38      57 ..     223     242 ..     220     257 .. 0.75

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 5.9e-12
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT......EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE-S CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg......akaaesieelvasldvvitmvkagkavdeviegllealkkgdilidgs 90 
                    +i+fiG G+ G  +a  l++ ++ v++++ + +  e+ v  +      +++ +s++++++++ +v+  v+ag+a  +v ++ ++ l++g++++d  
     CTQ30636.1   3 TIAFIGFGEAGGILAADLAR-EHAVTIWDCKLNGPEREVMLRkardsrVQVGNSLAQALEGATLVFSTVTAGEAL-KVAQQAAALLQPGQYFLDLN 96 
                    59***************986.699****97643333222221235677************************987.599999************** PP

                    ---HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-H CS
  NAD_binding_2  91 tsspedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGse 136
                    +++pe+ r+ a+        ++d+ V   +  A+  t  +++GG++
     CTQ30636.1  97 SVAPETKRQAAEHFL--PGAYIDVAVMAPVPPARLQT-PLLIGGPQ 139
                    *****9999888753..34566666666666666666.66666655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.3
                    HHHTTEEE-SSHHHHHHHCS CS
  NAD_binding_2  38 lvaegakaaesieelvasld 57 
                    ++++g++  e++ee+v++l+
     CTQ30636.1 223 VAEHGIRRSEEMEEVVKTLR 242
                    66777888888888888875 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   1.1e-06    0.0025       1      93 [.       3      94 ..       3      97 .. 0.76
   2 ?   -0.9   0.0       1.1   2.5e+03       8      25 ..     137     154 ..     134     205 .. 0.66
   3 ?   -1.7   0.0         2   4.5e+03      14      29 ..     219     238 ..     212     268 .. 0.49

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.1e-06
                   EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC..-EEECECHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEEE CS
  F420_oxidored  1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg..vkvtavdneeaaeeadvvvlavkpedveevlselakdalkgklvis 93
                   +i++iG+G+ g  la  l+++   +  i+    + pe+   l+++    v+v   + ++a+e a+ v+ +v    + +v++++a+ ++ g+ +++
     CTQ30636.1  3 TIAFIGFGEAGGILAADLAREH--AVTIWDCKLNGPEREVMLRKARDsrVQVGN-SLAQALEGATLVFSTVTAGEALKVAQQAAALLQPGQYFLD 94
                   69*******************6..444443334555555555554443366666.899***********************99777766766665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.1
                    SHHHHHHHHHHHHTTS-G CS
  F420_oxidored   8 Gnmgealasgllaagaqp 25 
                    G ++ea+a +l+  g ++
     CTQ30636.1 137 GPQAEAIAPRLQGLGLNA 154
                    778888888888777433 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2
                    HHHHHHHTTS....-GGCEE CS
  F420_oxidored  14 lasgllaaga....qpheiv 29 
                    l+s+++++g     + +e+v
     CTQ30636.1 219 LISRVAEHGIrrseEMEEVV 238
                    55566666633222222222 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       2.1   4.8e+03      19      31 ..      70      82 ..      59      87 .. 0.68
   2 ?   12.2   0.0   7.2e-05      0.16       1      60 [.     162     223 ..     162     271 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.1
  NAD_binding_11 19 aaasEalvlaeka 31
                    + a+Eal +a++a
      CTQ30636.1 70 VTAGEALKVAQQA 82
                    5566666666654 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 7.2e-05
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaGldpekvlevina..ssgrsnalenklpqrv 60 
                     G+ +a+K++  +++    a ++E+l +a+ +G++ e++     +  s+g   a+ ++l +rv
      CTQ30636.1 162 GQVSAIKMCRSVMIKGLEALTTECLFAAREYGVEEEVLSSLHHSfpSLGWTGAFPDYLISRV 223
                     66689****************************98877654332224455555555555555 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.9e-05      0.16       1      89 [.       4      82 ..       4     107 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.9e-05
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SSGGGHHHHHHHH CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsppissldvlkaC 89
                     + +iG+G  G  +a +lar++     +t++d ++++ e+++      ++    +++ n  a   ++l++++lv + ++  ++l+v++ +
       CTQ30636.1  4 IAFIGFGEAGGILAADLAREHA----VTIWDCKLNGPEREV---MLRKARDSRVQVGNSLA---QALEGATLVFSTVTAGEALKVAQQA 82
                     678*****************96....5*********99999...56677888888887655...8899999999988888888887755 PP

>> Uroplakin_II  Uroplakin II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.4e-05      0.19      28      98 ..      13      83 ..       5     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.4e-05
  Uroplakin_II 28 sgllspalaesllvalppchltggkasltvrrvneskvvksdfvvppcrarrelvsvvdssssysvtrlsa 98
                   g+l+  la    v++  c+l g +  +++r++ +s+v   +       +   + s v ++ +  v++ +a
    CTQ30636.1 13 GGILAADLAREHAVTIWDCKLNGPEREVMLRKARDSRVQVGNSLAQALEGATLVFSTVTAGEALKVAQQAA 83
                  699999********************************999999999999998899999999988876554 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.4   0.00065       1.5       2      97 ..       4      90 ..       3      97 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00065
                    EEEE--SHHHHHHHHHHHTTT--EEEE-S-HHHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHHHHHHHHCCC--TT- CS
  NAD_Gly3P_dh_N  2 iavlGaGswGtalAkvlaenghevrlwvreeelieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqalrevlkklkgllkkka 97
                    ia++G G  G  lA+ la++   v++w  +       n  +++v  L+  + ++ +++ + la+al+ga++++  v+     +v++++++ll++ +
      CTQ30636.1  4 IAFIGFGEAGGILAADLAREH-AVTIWDCKL------NGPEREVM-LR-KARDSRVQVGNSLAQALEGATLVFSTVTAGEALKVAQQAAALLQPGQ 90
                    899999999999999998875.899998764......33333332.33.35678899999999999999999999999999999999999988766 PP

>> HET-S  N-terminal small S protein of HET, non-prionic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.0   0.00017      0.39      13      20 ..      48      55 ..      47      55 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
       HET-S 13 SRVHVGNN 20
                SRV+VGN+
  CTQ30636.1 48 SRVQVGNS 55
                9******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2172.71
//
Query:       CTQ30637.1  [L=361]
Description: 4-oxalomesaconate tautomerase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.6e-111  370.7   0.0   8.8e-111  370.4   0.0    1.0  1  PrpF          PrpF protein
  ------ inclusion threshold ------
      0.019   14.0   0.1      0.042   12.9   0.0    1.5  2  Pro_racemase  Proline racemase


Domain annotation for each model (and alignments):
>> PrpF  PrpF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.4   0.0  9.8e-115  8.8e-111       4     371 .]       6     353 ..       3     353 .. 0.96

  Alignments for each domain:
  == domain 1  score: 370.4 bits;  conditional E-value: 9.8e-115
                 EEEEEEEETTEEEEEEEGGGS-GGGHHHHHHHHHHHT-S-TT-TTSS--SSGGG-EEEEEEE--STT-SEEEEEEEE-SSSS-EE-S---HHHHHHHHH CS
        PrpF   4 ipatllrGGtskGvffrledlPedaeerdklllrviGspdplqiDGlGGgnsltskvviisksskpdaDvdYlfgqvaidkeivDtsgnCGnlsaavGp 102
                 ip+  +rGGtsk + f+++dlP+d   rd++ll+v+Gspdp+qiDG+GG+ +ltskv+ii +s++pdaDvdYlf+qv++  ++vD+  nCGn++aavGp
  CTQ30637.1   6 IPCLWMRGGTSKAACFLADDLPADPVRRDAVLLAVMGSPDPRQIDGIGGADPLTSKVAIIRRSARPDADVDYLFAQVNVAAATVDYGQNCGNILAAVGP 104
                 9************************************************************************************************** PP

                 HHHHTT-SGGG--EEEEEEEETTTTEEEEEEEEEETTEE----SB--TT-SS-B--EEEEEES------S-SSTTS-SSEEEEETTEEEEEEEEESSSE CS
        PrpF 103 faieaGlvaarepvtavrilnvnigklivaevpvedGqvqeeGdveldGvpgsaaevalefldaadsktgalfPtgnlvdtldvpggtvevtlidaaiP 201
                 faie Glv    p+t+vri+  n+g+l vae+p     v++ G+ ++dGvpgsa+++ l+fld a+s+ gal+Ptg + d +d     +evt+id ++P
  CTQ30637.1 105 FAIERGLVRHDAPLTRVRIFMENTGQLAVAEIPCDADGVDYVGESRIDGVPGSASPILLHFLDVAGSSCGALLPTGRVRDRFDG----IEVTCIDNGMP 199
                 ************************************************************************************....*********** PP

                 EEEEETTTTT--S---THHHHT-HHHHHHHHHHHHHHHHHTTS-SSGGGGGG--SSSEEEEEE----EE-SS--EE-GGG-SEEEEEEETTEE-SS--H CS
        PrpF 202 lvlveaeslGltGtelaeelnaDkqlLarleklrvaaaekmGligrveeavlrqhvPklalvakpkdykasgGklveaveidllvralsmgklhkalav 300
                 ++l+ a  lG tG+e +e+l+ D +l  rle++r++a+  m  +g+v++ +    vPk++l+a+p+     gG      +i+   r++ ++++h ++ v
  CTQ30637.1 200 VILLRACDLGCTGYETREQLDNDDALKRRLESIRLQAGPLMQ-LGDVSQRT----VPKMTLIAEPR----HGG------AIS--SRTFIPHRCHASIGV 281
                 *****************************************9.99999888....***********....888......777..9************** PP

                 HHHHHHHHHHHSTTSHHHHHTTSS-..-SEEEEEETTEEEEEEEEEEEETTEEEEEEEEE-EEEEEEEEEEEE CS
        PrpF 301 taavaiataaaveGtlvnriaggge..rtkvrlehpsGtlevkleakqadatvlkakivrtarrlmeGevyvp 371
                  +av++a+a+ ++G++++ +a+     +  +++ehp G ++v+l+ +  d++     ++rtar l+ Gev++p
  CTQ30637.1 282 FGAVSVASACLLPGSVAQGLAQVAPgdTPLLSVEHPTGEFSVTLQLDA-DGALAGCGLLRTARLLFAGEVFIP 353
                 *****************98776543226789*************9876.99*******************986 PP

>> Pro_racemase  Proline racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.7e-06     0.042      55     113 ..      61     125 ..      54     156 .. 0.77
   2 ?   -2.5   0.0      0.23     2e+03      87     124 ..     289     327 ..     253     332 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.7e-06
                   EEEEEE--SSTTSSEEEEEEE......SSSB-SSTHHHHHHHHHHHHHTTSS-SEEEECEEEEEE CS
  Pro_racemase  55 sgallvppkepdadlgvifle......tsgylpmcGsntigvvtvlletGlvevqepetklslet 113
                   ++a++  + +pdad+  +f +      t +y + cG+   +v  +++e Glv   +p t++++ +
    CTQ30637.1  61 KVAIIRRSARPDADVDYLFAQvnvaaaTVDYGQNCGNILAAVGPFAIERGLVRHDAPLTRVRIFM 125
                   6899999**********99872222224689999**************************99533 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.23
                   HHHHHHHHHHTTSS-SEEEECE.EEEEETTEEEEEEEEC CS
  Pro_racemase  87 tigvvtvlletGlvevqepetk.lsletpaGlvevtaec 124
                   + ++    + +Gl +v    t  ls+e p+G  +vt++ 
    CTQ30637.1 289 SACLLPGSVAQGLAQVAPGDTPlLSVEHPTGEFSVTLQL 327
                   334444456666666665555415588888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       189  (0.0105416); expected 358.6 (0.02)
Passed bias filter:                      172  (0.0095934); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2815.59
//
Query:       CTQ30638.1  [L=237]
Description: 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-37  127.7   2.9    5.5e-37  127.2   2.9    1.2  1  RraA-like  Aldolase/RraA


Domain annotation for each model (and alignments):
>> RraA-like  Aldolase/RraA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   2.9   3.1e-41   5.5e-37       2     150 .]      31     178 ..      30     178 .. 0.91

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 3.1e-41
                 HHHHHHCEE-SSBSTB.TT.EES..EEEEEEEEEESS.BGHHHHHHHTS--TTEEEEEESTT.SSSSSECE-HHHHHHHHHTTBSEEEEEEEES-HHHH CS
   RraA-like   2 advsDalkklggrsggirplers..fvGpavTvkvveadnslvkealeeagpgdvlVvdgggdeslraallGgllataakangvaGvvvdGavRDvael 98 
                 a++++a+++ g    +irp++++   +G+avTv v+++dn++++ a+e++++gd+lVv  ++ +     ++G+llat+++++gv G+v d  +RD+++l
  CTQ30638.1  31 ATLHEAWDRQGLMGPAIRPIQQGvsRAGNAVTVLVTPGDNWMFHVAVEQCRAGDILVVAPTSPC--GDGFFGDLLATSLQSRGVVGLVGDIGIRDSQTL 127
                 7899999955555559***99955699*******************************999966..45555**************************** PP

                 TTSSSEEEEEEE-SSB-B-S.STSEESS-EEETTEEE-TTSEEEEETTEEEE CS
   RraA-like  99 reldfpvfargvtprkkpkkkgkgevnvpveiggvtvkpgdlivaDedGvvv 150
                 re++f v++r+v+++++ k+ + g+vnvpv ++g+ v+pgd++vaD+dGvvv
  CTQ30638.1 128 REMGFAVWSRQVYAQGTVKE-SLGSVNVPVICAGQLVQPGDVVVADDDGVVV 178
                 ***************95555.******************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1839.20
//
Query:       CTQ30639.1  [L=246]
Description: 4-oxalmesaconate hydratase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-23   82.8   0.2    4.4e-23   82.4   0.2    1.2  1  PIG-L            GlcNAc-PI de-N-acetylase
     0.0062   16.6   0.1       0.18   11.8   0.1    2.2  1  Glyco_trans_4_2  Glycosyl transferase 4-like
  ------ inclusion threshold ------
      0.082   12.0   0.1       0.12   11.4   0.1    1.3  1  Sugar-bind       Putative sugar-binding domain


Domain annotation for each model (and alignments):
>> PIG-L  GlcNAc-PI de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.2   7.3e-27   4.4e-23       1     130 [.      11     139 ..      11     140 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 7.3e-27
                 EEEESSTTHHHHHHHHHHHHHHHTT-EEEEEECE--TT---STTTTHH.....-HHHHHHHHHHHHHHHHCTE..EEEEECCCBTT-STTS-CHHHHHH CS
       PIG-L   1 llvlAHpDDellfaggtiaklvaagvevkivcltaGdagsplatleek.....eelaeiRekEaraaakhlgvadedvffldfpDgslesydedelldd 94 
                 l+v+AH  D ++ agg ia ++ +g +v++vcl+ G+ g ++a+l+ k     e ++++R++Ea+aaa++lg+   +v+f+d+ D  l+    +e+l +
  CTQ30639.1  11 LVVSAHSADFVWRAGGAIALHALQGYQVHVVCLSFGERG-ESAKLWRKgnmteEAVKQVRREEAQAAAAILGA---SVEFFDIGDYPLRA--DKETLFR 103
                 79*************************************.566666667***99999****************...9*************..99***** PP

                 HHHHHHHH--SEEEEE-TTTTH-HHHHHHHHHHHHH CS
       PIG-L  95 laklieryrPdvvltldpegddhpDHtavasaavaa 130
                 la++ +r++P++vlt++ ++  + DH  ++++a++a
  CTQ30639.1 104 LADVYRRIQPHFVLTHSLHDPYNYDHPLASHLAQEA 139
                 ********************99*****999999987 PP

>> Glyco_trans_4_2  Glycosyl transferase 4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1     3e-05      0.18      23     108 ..      34     147 ..      10     149 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3e-05
  Glyco_trans_4_2  23 rgyeVhvitp.kkga..kdeleaegihvhrl.kvd................rkgpleylka................fklkklikkikPDvvha 80 
                      +gy+Vhv+++  +++  + +l ++g    +  k +                +                         f+l++++++i+P  v +
       CTQ30639.1  34 QGYQVHVVCLsFGERgeSAKLWRKGNMTEEAvK-QvrreeaqaaaailgasV--------EffdigdyplradketlFRLADVYRRIQPHFVLT 118
                      577777777743333222222233322222221.122223344444333331........033333344444444449**************** PP

  Glyco_trans_4_2  81 hya.kpygllgslaarlsgvipvvlsvwG 108
                      h    py++   la+ l++  ++++ + G
       CTQ30639.1 119 HSLhDPYNYDHPLASHLAQEARIIAQAEG 147
                      **966779999999999998999887765 PP

>> Sugar-bind  Putative sugar-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   2.1e-05      0.12     143     190 ..      36      88 ..      10      91 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.1e-05
                 HT-SEEEEE-EEHCCCCHHHCCTTS-HHHHHHH..HHTTEEEEETTE...EEE CS
  Sugar-bind 143 kkadvalvGiGsaseeaklvkrgflteeelael..reegaVGeilgr...ffD 190
                  ++ v++ + G+  e+akl+++g +tee ++++  +e++a++ ilg    ffD
  CTQ30639.1  36 YQVHVVCLSFGERGESAKLWRKGNMTEEAVKQVrrEEAQAAAAILGAsveFFD 88 
                 6899*****************************54566788888886555666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1885.52
//
Query:       CTQ30640.1  [L=408]
Description: HTH-type transcriptional regulator GalR [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-35  121.4   4.7    3.3e-35  121.4   4.7    1.6  2  LysR_substrate  LysR substrate binding domain
    7.1e-34  115.6   2.1    4.4e-18   65.0   0.0    3.5  3  HTH_1           Bacterial regulatory helix-turn-helix protein
     0.0002   21.2   1.5       0.96    9.4   0.1    3.3  3  MarR_2          MarR family
      0.003   17.1   0.0       0.24   11.0   0.0    3.3  3  HTH_24          Winged helix-turn-helix DNA-binding
     0.0077   16.2   0.2        3.5    7.8   0.1    2.5  2  Cro             Cro
  ------ inclusion threshold ------
      0.024   14.5   0.1        2.6    8.0   0.0    2.6  2  HTH_23          Homeodomain-like domain
       0.03   14.3   0.1        0.1   12.6   0.0    1.9  2  TP6A_N          Type IIB DNA topoisomerase
       0.07   12.7   0.0          7    6.3   0.0    2.5  2  HTH_CodY        CodY helix-turn-helix domain
      0.076   12.9   0.1         17    5.4   0.0    2.8  2  MarR            MarR family


Domain annotation for each model (and alignments):
>> LysR_substrate  LysR substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.3   2.7e+03      77     115 ..      58      98 ..      41     116 .. 0.67
   2 !  121.4   4.7   1.6e-38   3.3e-35       3     207 ..     196     402 ..     194     404 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
                     EEEEEEEEETTS.....GGGGSSSECGGGGCTSEEEEESTTSTH CS
  LysR_substrate  77 eeplvlvaspdh.....pLargepvsledLadeplilleegsgl 115
                     e ++  +++ ++     p   +++ +++dL+  p +l +++++ 
      CTQ30640.1  58 ERHYSGMVPTEYgkcilP---RARRAIDDLQAIPALLQKHHTRS 98 
                     555555555555333333...44446788888888886666554 PP

  == domain 2  score: 121.4 bits;  conditional E-value: 1.6e-38
                     TSCEEEEEEEECCCHHHHHHHHHHHHHHHSTTEEEEEEEESHHHHHHHHHTTSSSEEEEESSS..CCTTEEEEEEEEEEEEEEEETTSGGGGSSS CS
  LysR_substrate   3 glrgrLrigapptlaryllppllarfraryPevelelvegdseelldllaegelDlairagpp..edsglearpLaeeplvlvaspdhpLargep 95 
                      l+g++riga p   ++llp ++a+f+a++P+++l   e++ e+l++ +++g +D+ i a+++  + ++l ++ L+ee ++++++++hpL r+ p
      CTQ30640.1 196 VLEGTVRIGALPLSRTRLLPSAIAAFLAQHPGITLMTNESPYESLVADMRAGNIDFIIGALRQdeDLPDLCSEALFEEDMLILLRNNHPLLRH-P 289
                     579************************************************************99***************************8.7 PP

                     ECGGGGCTSEEEEESTTSTHHHHHHHHHHCTTEEC.EEEEEESSHHHHHHHHHTTS-BEEEEGGGHHCCCHTTTEEEEEESSTTCEEEEEEEEET CS
  LysR_substrate  96 vsledLadeplilleegsglrdlledalreaglkp.rvalevnsleallalvaaGlGiallprsavrdeladgrlvalplpepplprelylvyrk 189
                      + ++La  +++l +++++ r ll++a+   gl++ ++++e+ +++++++l +  +++a +++s +r e ++g l++lp+p p+ +r+++l +r+
      CTQ30640.1 290 DPRSQLATAQWVLPRANAPARNLLDKAFVTLGLPLpQPTVETGDAAMVRGLLQGSDMLAAVSASQMRFETDNGLLSVLPVPLPDTTRRIGLTFRA 384
                     778*******************************99**********************************************9999********* PP

                     TCCCHHHHHHHHHHHHHH CS
  LysR_substrate 190 grelspavrafidflrea 207
                     g+ +spa++a+++f+ ++
      CTQ30640.1 385 GSLPSPATQALLRFIYQQ 402
                     **************9765 PP

>> HTH_1  Bacterial regulatory helix-turn-helix protein, lysR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   2.2e-21   4.4e-18       3      60 .]      14      71 ..      12      71 .. 0.97
   2 !   44.9   0.2   4.1e-15   8.2e-12       2      60 .]     112     170 ..     111     170 .. 0.97
   3 ?    3.5   0.0     0.036        71      27      40 ..     173     186 ..     171     194 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 2.2e-21
                HHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1  3 qlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60
                qlr f +va  gs++rAA+ L  +q+a++r+i++LE++l+v+LfeR+  g+++Te+G+
  CTQ30640.1 14 QLRFFCQVALRGSVSRAADDLFRTQSAITRAIRDLEAALNVTLFERHYSGMVPTEYGK 71
                9*********************************************999*******95 PP

  == domain 2  score: 44.9 bits;  conditional E-value: 4.1e-15
                 HHHHHHHHHHHHSSHHHHHHHHTS-HHHHHHHHHHHHHHHTS-SEEESSSEEEE-HHHH CS
       HTH_1   2 rqlrlfvavaeegsftrAAeeLglsqpavsrqikrLEeelgvpLfeRtgrglrLTeaGe 60 
                 r+l++f+++    +    A++Lg++qpavs+++k LE+  +  Lf Rt  g+r+T+a+e
  CTQ30640.1 112 RRLAIFIQLYHVNHTQTVAQQLGITQPAVSAALKVLEKGADSALFRRTPEGVRPTPAAE 170
                 899******************************************************86 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHHHH CS
       HTH_1  27 qpavsrqikrLEee 40 
                 +p vsr++++LE+ 
  CTQ30640.1 173 YPPVSRALNELENI 186
                 899*********96 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1   0.00048      0.96      23      48 ..      26      51 ..      11      52 .. 0.89
   2 !    9.0   0.0   0.00062       1.2      27      47 ..     129     149 ..     123     150 .. 0.92
   3 ?   -3.4   0.0       4.8   9.6e+03      38      46 ..     176     184 ..     176     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00048
                EHHHHHHHHTSSHHHHHHHHHHHHHT CS
      MarR_2 23 tvgelarrlglsksavsrilkrLvaa 48
                +v+  a+ l  ++sa++r++++L+aa
  CTQ30640.1 26 SVSRAADDLFRTQSAITRAIRDLEAA 51
                89999*******************97 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00062
                 HHHHHTSSHHHHHHHHHHHHH CS
      MarR_2  27 larrlglsksavsrilkrLva 47 
                 +a+ lg++++avs +lk L++
  CTQ30640.1 129 VAQQLGITQPAVSAALKVLEK 149
                 799***************996 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.8
                 HHHHHHHHH CS
      MarR_2  38 vsrilkrLv 46 
                 vsr+l++L+
  CTQ30640.1 176 VSRALNELE 184
                 899999997 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.17   3.4e+02      24      43 ..      31      50 ..      26      51 .. 0.82
   2 !   11.0   0.0   0.00012      0.24      23      43 ..     129     149 ..     126     150 .. 0.94
   3 ?    0.3   0.0      0.25   5.1e+02      32      43 ..     174     185 ..     173     186 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.17
      HTH_24 24 AerlglSpstvnrrlkrLee 43
                A+ l  ++s+++r ++ Le 
  CTQ30640.1 31 ADDLFRTQSAITRAIRDLEA 50
                556667899*********96 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00012
      HTH_24  23 LAerlglSpstvnrrlkrLee 43 
                 +A++lg+++++v++ lk Le+
  CTQ30640.1 129 VAQQLGITQPAVSAALKVLEK 149
                 79*****************98 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.25
      HTH_24  32 stvnrrlkrLee 43 
                 ++v+r l++Le+
  CTQ30640.1 174 PPVSRALNELEN 185
                 69********96 PP

>> Cro  Cro
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0069        14      16      34 ..      28      46 ..      21      58 .. 0.90
   2 !    7.8   0.1    0.0017       3.5      17      35 ..     128     146 ..     116     149 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0069
                HHHHHHHTS-HHHHHHHHH CS
         Cro 16 aktAkdlgvkqsaIsKAlk 34
                 ++A dl  +qsaI +A++
  CTQ30640.1 28 SRAADDLFRTQSAITRAIR 46
                589**************97 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0017
                 HHHHHHTS-HHHHHHHHHC CS
         Cro  17 ktAkdlgvkqsaIsKAlka 35 
                  +A++lg++q a+s Alk+
  CTQ30640.1 128 TVAQQLGITQPAVSAALKV 146
                 48***************96 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.03        61      17      41 ..      24      48 ..      13      53 .. 0.83
   2 ?    8.0   0.0    0.0013       2.6       7      48 ..     113     153 ..     110     155 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.03
      HTH_23 17 GlsvreIAreLgvsrrTvyrwlkry 41
                + sv+++A+ L ++++ + r ++  
  CTQ30640.1 24 RGSVSRAADDLFRTQSAITRAIRDL 48
                5699****************99975 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0013
      HTH_23   7 Rlr.illllaeGlsvreIAreLgvsrrTvyrwlkryreeGleg 48 
                 Rl   ++l+     ++++A++Lg+++  v+  lk   e+G+++
  CTQ30640.1 113 RLAiFIQLYH-VNHTQTVAQQLGITQPAVSAALKVL-EKGADS 153
                 5553566666.68899**************999986.777665 PP

>> TP6A_N  Type IIB DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.2e-05       0.1      34      56 ..      33      55 ..      29      58 .. 0.93
   2 ?   -3.3   0.0       4.8   9.5e+03       9      20 ..     395     406 ..     392     407 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.2e-05
                GS-SSHHHHHHHHHHHHHHHTS- CS
      TP6A_N 34 elFksQaesdrliddievllgvs 56
                 lF++Q+++ r+i+d+e++l+v+
  CTQ30640.1 33 DLFRTQSAITRAIRDLEAALNVT 55
                69******************996 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.8
                 HHHHHHHHHHTT CS
      TP6A_N   9 vlelihelleeg 20 
                 +l++i+++++ g
  CTQ30640.1 395 LLRFIYQQVQDG 406
                 799999998875 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0035         7       7      31 ..      27      51 ..      24      69 .. 0.89
   2 ?    3.5   0.0     0.026        51       9      29 ..     128     148 ..     125     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0035
    HTH_CodY  7 askiaDriGitrsvivnaLrkLesa 31
                 s+ aD +  t+s i  a+r Le+a
  CTQ30640.1 27 VSRAADDLFRTQSAITRAIRDLEAA 51
                58899******************98 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.026
    HTH_CodY   9 kiaDriGitrsvivnaLrkLe 29 
                 ++a ++Git+  +  aL+ Le
  CTQ30640.1 128 TVAQQLGITQPAVSAALKVLE 148
                 689***************999 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.016        31      26      43 ..      33      50 ..      26      51 .. 0.85
   2 ?    5.4   0.0    0.0087        17      24      43 ..     130     149 ..     123     150 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.016
                HHTS-HHHHHHHHHHHHH CS
        MarR 26 klgvskstvtrvldrLek 43
                 l  ++s++tr+++ Le 
  CTQ30640.1 33 DLFRTQSAITRAIRDLEA 50
                56789***********96 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0087
                 HHHHTS-HHHHHHHHHHHHH CS
        MarR  24 akklgvskstvtrvldrLek 43 
                 a +lg+++++v+ +l+ Lek
  CTQ30640.1 130 AQQLGITQPAVSAALKVLEK 149
                 789****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3130.07
//
Query:       CTQ30641.1  [L=420]
Description: Gallate dioxygenase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-62  208.5   0.0    2.5e-61  207.2   0.0    1.6  2  LigB      Catalytic LigB subunit of aromatic ring-opening dio
      2e-33  114.4   0.1    3.7e-33  113.5   0.1    1.5  1  LigA      Aromatic-ring-opening dioxygenase LigAB, LigA subun


Domain annotation for each model (and alignments):
>> LigB  Catalytic LigB subunit of aromatic ring-opening dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.2   0.0   2.8e-65   2.5e-61       3     268 ..       8     270 ..       6     274 .. 0.96
   2 ?   -1.9   0.0      0.16   1.4e+03     200     262 ..     349     414 ..     325     418 .. 0.48

  Alignments for each domain:
  == domain 1  score: 207.2 bits;  conditional E-value: 2.8e-65
        LigB   3 lllsHvppilaavd.gkeqealrekvikgyesireriaeksPdtiivvsphhlt....dvnpvfvlgvaeefeaiddfgkflprleyelkgnpeLaeki 96 
                 + +sH p+i+ avd  k+q++ +++ ++++e++++++ ek+Pd+++ + ++h+t    d +++f lg +++++ +d+ g  +pr  ++++gn  L ++i
  CTQ30641.1   8 IAVSHTPTIGFAVDhHKQQDPAWAPIFQSFEPLQRWLEEKKPDALVYIFNDHVTafffDHYSTFTLGIDSQYDVADEGG--GPRCLPPVQGNAALSRHI 104
                 678*******************************************************9******************88..****************** PP

        LigB  97 aealkksgidlavesnsmklDHGtlvPLelmlp....deakvpvikvslntvaypllsferlykLGeAlrkaveel..dknvlilgsGglsHqlegdea 189
                   +l+++++d+   + ++klDHG++ PL+ +lp    ++++  vi++ + +++ p++s++r+ykLG+Alr+a+e++  d nv+i+++GglsHq +g++ 
  CTQ30641.1 105 GASLMADEFDMSF-FMDKKLDHGLFSPLSALLPwdeaQGWPTAVIPLQIGVLQFPVPSARRCYKLGQALRRAIESFpeDINVAIVATGGLSHQVHGERC 202
                 ***********99.********************99989***********************************************************9 PP

        LigB 190 akadaqtlllneefdeelldllkegrveelckmskeelsaaagheeeelvplvvalGalsgdkaelrkelvsyeglpav 268
                 +       ++n+ +d +++d+l +++ + l++m+  e+ +  g e+ e+++++v++Gals    ++ +  + y++ +++
  CTQ30641.1 203 G-------FNNPDWDAQFVDMLVNDPEK-LTEMTLGEYAELGGMEGSEVIMWLVMRGALSA---NVTETWRDYYLPSMT 270
                 9.......89*****************9.*******************************6...666666667766655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.16
        LigB 200 neefdeelldllkegrveelckmskeel.saaaghe..eeelvplvvalGalsgdkaelrkelvsy 262
                 ++ + ee ++ll++ ++  l+++ +     +++g+     +l+  ++++G   +++++ r+++v+y
  CTQ30641.1 349 EAGLSEEEQQLLNARDWRGLIQYGASFFlLEKMGAVvgVSNLHIYAAMRGQTLEAFQQTRNQQVTY 414
                 444555555555555555555554432202222222123444444555555554455555555555 PP

>> LigA  Aromatic-ring-opening dioxygenase LigAB, LigA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   0.1   4.1e-37   3.7e-33       1      87 []     323     409 ..     323     409 .. 0.99

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 4.1e-37
                 HHHHHHGGGSHHHHHHHHHSHHHHHHHS---HHHHHHHHTT-HHHHHHHT--HHHHHHHHHHTT--HHHHHHHHTTS-HHHHHTTSS CS
        LigA   1 LnkflmsLneaenRerFladeeayldeygLteeqkeavlardwlkllalGgniyyLaKlaavlglsmqeigaamtGmsleeFqatmr 87 
                 Ln+fl++L+e+++RerFl+ ++++++e+gL+ee+++++ ardw++l+++G+++++L+K++av+g+s+++i+aam+G++le+Fq+t++
  CTQ30641.1 323 LNRFLHRLIEPAWRERFLQSPQSLYAEAGLSEEEQQLLNARDWRGLIQYGASFFLLEKMGAVVGVSNLHIYAAMRGQTLEAFQQTRN 409
                 8************************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3166.76
//
Query:       CTQ30642.1  [L=456]
Description: Gallate transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-53  181.9  66.0    1.1e-40  139.7  38.0    2.1  2  MFS_1       Major Facilitator Superfamily
    2.2e-20   73.0  30.7    5.1e-20   71.8  11.3    2.2  2  Sugar_tr    Sugar (and other) transporter
    1.4e-08   34.4  10.9    1.4e-08   34.4  10.9    2.2  2  MFS_4       Uncharacterised MFS-type transporter YbfB
    4.2e-06   25.4   5.7    4.2e-06   25.4   5.7    2.1  2  MFS_3       Transmembrane secretion effector
      4e-05   22.6   8.2      4e-05   22.6   8.2    2.7  3  MFS_1_like  MFS_1 like family
     0.0051   15.1   0.2     0.0051   15.1   0.2    3.2  3  BT1         BT1 family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.7  38.0   3.6e-44   1.1e-40       2     291 ..      30     335 ..      29     337 .. 0.83
   2 !   56.1  20.0   9.1e-19   2.7e-15       1     187 [.     261     446 ..     261     455 .. 0.93

  Alignments for each domain:
  == domain 1  score: 139.7 bits;  conditional E-value: 3.6e-44
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 +++++l ++++++ g+++p al ed gis +e+g +l++ ++g a+++l++G+lsdr+Gr+r+ll++++lfal++l++++ ++++  l+++r+l+Glg 
  CTQ30642.1  30 FIIIMLDGYDAAVMGFVAP-ALIEDWGISRAEMGPILGAAMFGVAIGALVAGPLSDRYGRKRILLWSVALFALFSLAGAV-AQSPtQLALMRFLTGLGL 126
                 8999***************.999***************************************************777775.888989************ PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 ga++p++++l+a++ p++++g +i l+++gf++G+ lg  +++ l+s+++W+++ ++ +++ l+++ ++++ lpe++ +    +   e           
  CTQ30642.1 127 GAVMPNCVTLVAEYMPERRKGVMITLMYSGFNVGSGLGGFIAAGLLSHYSWHSALVFGGVLPLVVLPFMIVMLPESAMNMVARRLPGEQiaralnrlgg 225
                 *****************************************************************7776677755555555444333336777766666 PP

       MFS_1 189 ............kgtgpaplvp.....awkallkdpvlw...illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrl 267
                                      p        +l+++ +     +l+++ +++ f++++l  +lp++     gls l +a+++ +l++l+g  +++l+g l
  CTQ30642.1 226 qftaetvfqlnaP--------PitrssKVAQLFRHGYARgtiALWLTYFMGLFVIYLLNGWLPTI-LRSGGLS-LQQAAMMTGLFQLGGPLGGILVGML 314
                 6676554443331........12233333344444444245679999999999***********7.9999***.************************* PP

       MFS_1 268 sdrlgrrrrlllallllllaalgl 291
                 +dr +++  +  +++   l++l+l
  CTQ30642.1 315 MDRASAKAVIAATYF---LGCLCL 335
                 ***665555555555...555544 PP

  == domain 2  score: 56.1 bits;  conditional E-value: 9.1e-19
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fasslwlllvlrvlqGl 97 
                 l+l++f+  + +++l+ +lp ++ ++ g+s +++ ++++l+ lg  ++ +++G l+dr +++ v+ ++++l +l+ ll    +  ++ +l vl +++G+
  CTQ30642.1 261 LWLTYFMGLFVIYLLNGWLP-TILRSGGLSLQQAAMMTGLFQLGGPLGGILVGMLMDRASAKAVIAATYFLGCLC-LLSQgvMDFGSAALSVLIFISGM 357
                 699*****************.888999************************************************.4333443245668********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 +  ++  + +a+  +++  e r+ +++++ +    Gail   lgg+l+ +  g +++f++la+ ++la+++  +ll + +++++r +++e+
  CTQ30642.1 358 CINGAQNGLQAYSPAYYQTEIRATGVSWMHGIGRTGAILSSTLGGMLMlAVPGHSSIFLVLALPACLAGIC--ILLHRMNHAKPRLTEAEL 446
                 ************************************************9**********************..999999999999998887 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8  11.3   1.7e-23   5.1e-20      10     250 ..      34     253 ..      25     291 .. 0.80
   2 !    4.7  14.8    0.0037        11      45     166 ..     290     409 ..     225     433 .. 0.76

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 1.7e-23
                 HHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGG CS
    Sugar_tr  10 llfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivg 108
                 +l gYd +v+g+++  l     + +  s++        +g i++++++G +iG+l+ag+l+dr+GRk +ll +++lf   ++  a+a+   s  +l+++
  CTQ30642.1  34 MLDGYDAAVMGFVAPALI----EDWGISRA-------EMGPILGAAMFGVAIGALVAGPLSDRYGRKRILLWSVALFALFSLAGAVAQ---SPTQLALM 118
                 567888888888887777....55555554.......3689***********************************************...******** PP

                 HHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---HHHHHHTT-HH. CS
    Sugar_tr 109 RvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPESPrylvekgkee. 205
                 R+l+G+g+G++   + ++++E+ p++  g +++l  ++  +G  ++ ++ +gl    +   w+  l +  v++l++l ++ ++lPES   +v ++    
  CTQ30642.1 119 RFLTGLGLGAVMPNCVTLVAEYMPERRKGVMITLMYSGFNVGSGLGGFIAAGLLSHYS---WHSALVFGGVLPLVVLPFMiVMLPESAMNMVARRLPGe 214
                 *****************************************************77777...9999999999999888777699****999887765444 PP

                 HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHHHSH CS
    Sugar_tr 206 eakevlaklrgeedadrelaeekdsleaeqeeekaswkellsskt 250
                 +  + l +l g+  a+  ++  +  + +++     ++ +l++  +
  CTQ30642.1 215 QIARALNRLGGQFTAETVFQLNAPPITRSS-----KVAQLFRH-G 253
                 777888888888777777777777777773.....36666666.3 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0037
                 ..HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHH CS
    Sugar_tr  45 svlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsly 143
                   +  +++++f++G+ +G++++g+l+dr + k +++++ +l + + + q++ +  +   +l v  +++G+++ +a++    y   +  +++R + vs+ 
  CTQ30642.1 290 LQQAAMMTGLFQLGGPLGGILVGMLMDRASAKAVIAATYFLGCLCLLSQGVMD--FGSAALSVLIFISGMCINGAQNGLQAYSPAYYQTEIRATGVSWM 386
                 4567899**********************************************..56777777778999999888888888888888888888888888 PP

                 HHHHHHHHHHHHHHHHHHHTSS- CS
    Sugar_tr 144 qlaitfGilvaaifglglnktsn 166
                      +G ++++++g  l     
  CTQ30642.1 387 HGIGRTGAILSSTLGGMLMLAVP 409
                 88888888887777766655544 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4  10.9   4.7e-12   1.4e-08      16     176 ..      47     206 ..      43     224 .. 0.84
   2 ?   -2.9  12.5         1   3.1e+03     181     328 ..     247     392 ..     226     433 .. 0.66

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 4.7e-12
       MFS_4  16 LPallaegqlslsqagllaaaNylGYLvGallaafalsagaeRlr.llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaa 113
                  Pal+++ ++s +++g +  a + G  +Gal+a   ls +  R r ll ++ + +l  la a+++s + ++l+Rfl+G++ ++v+    +lv + + + 
  CTQ30642.1  47 APALIEDWGISRAEMGPILGAAMFGVAIGALVA-GPLSDRYGRKRiLLWSVALFALFSLAGAVAQSPTQLALMRFLTGLGLGAVMPNCVTLVAEYMPER 144
                 59*****************************99.5555555666636666666777789999************************************* PP

       MFS_4 114 rrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpraalre 176
                 r++ ++ l+++G  +G  ++g +++ ll +  s++s+ +  +vl +v+l  ++++lp++a + 
  CTQ30642.1 145 RKGVMITLMYSGFNVGSGLGGFIAAGLLSH-YSWHSALVFGGVLPLVVLPFMIVMLPESAMNM 206
                 **********************99988766.45666678889999999988888888655544 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1
       MFS_4 181 aeaakaeqkslpllalllaYglaGfGYiitatFlvaiardgaggalleallWllvGlaaivgvlvwlrvakrsglrralaaallieavgvllsllspsp 279
                 a+    +   ++++al l+Y++  f   +   +l+ i r+g+ +  ++a++  l+ l+  +g  +   + +r  +++++aa++ +  +++l   ++   
  CTQ30642.1 247 AQL-FRHGYARGTIALWLTYFMGLFVIYLLNGWLPTILRSGGLSLQQAAMMTGLFQLGGPLGGILVGMLMDRASAKAVIAATYFLGCLCLLSQGVM-DF 343
                 444.45666778888888888777776777788888888888888888888888888888888888888888888888888888888887766553.45 PP

       MFS_4 280 lglivssvll.GltflaitalvlqlarelappatrrllglmTasfgigQi 328
                  + ++s++++  ++ +   + +lq+    + ++++r+ g +  ++gig +
  CTQ30642.1 344 GSAALSVLIFiSGMCINGAQNGLQAYSPAYYQTEIRATG-VSWMHGIGRT 392
                 566667665425566667777787777777777777766.4566676653 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   5.7   1.4e-09   4.2e-06      53     214 ..      67     228 ..      41     237 .. 0.81
   2 ?    0.5   6.5      0.05   1.5e+02     258     350 ..     295     388 ..     266     452 .. 0.69

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.4e-09
       MFS_3  53 aatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvlaalgllspwlllaltlligiGaalndPaWqAsvgelvkrrdvpaAvaLnsvginia 151
                 aa   + + +++aG l+D + r+++ll+  +l al s     la    +sp  l  + +l+g+G    +P     v e ++ r     ++L   g+n+ 
  CTQ30642.1  67 AAMFGVAIGALVAGPLSDRYGRKRILLWSVALFALFS-----LAGAVAQSPTQLALMRFLTGLGLGAVMPNCVTLVAEYMPERRKGVMITLMYSGFNVG 160
                 6666777889******************999988766.....555567899************************************************ PP

       MFS_3 152 RsvGPAlgGvlvaavG..aalafa.vnalsyl.alivallrwkrevrksslprEkllealra.glRft 214
                    G  ++  l++     +al+f+ v  l  l ++iv l ++  ++ +++lp E++ +al+  g  ft
  CTQ30642.1 161 SGLGGFIAAGLLSHYSwhSALVFGgVLPLVVLpFMIVMLPESAMNMVARRLPGEQIARALNRlGGQFT 228
                 ****9999888887661144555323333333256777888999999************964255665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.05
       MFS_3 258 illgalGvGAilgalllsrLRerlsserlvllaavalAlvllslalasslwvavlvlll.gGaaWitalstlnvavqlavPrWvvgRalavYlt 350
                 ++ g + +G  lg++l+ +L +r s++++++ + +   l+lls ++++    a+ vl++ +G +   a  +l++   +     +++ +++    
  CTQ30642.1 295 MMTGLFQLGGPLGGILVGMLMDRASAKAVIAATYFLGCLCLLSQGVMDFGSAALSVLIFiSGMCINGAQNGLQAYSPAYYQTEIRATGVSWMHG 388
                 56677899***************************************98888877777526766555655555544444444455555554444 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   8.2   1.4e-08     4e-05     226     374 ..      24     172 ..      19     183 .. 0.89
   2 ?    2.0   1.5     0.026        77      26      68 ..     283     324 ..     258     343 .. 0.59
   3 ?   -1.5   0.1      0.29   8.7e+02     153     184 ..     343     374 ..     338     388 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.4e-08
  MFS_1_like 226 eviifllvalilgmswgiienFlflYL.kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaii.enawlvlpievL 322
                 +v+++++++++l    +++  F+   L ++ g s+  +G ++   +++  +  ++a  l +++G  ++l++++ +++l f+l +++ +++  + ++ +L
  CTQ30642.1  24 NVLLLCFIIIMLDGYDAAVMGFVAPALiEDWGISRAEMGPILGAAMFGVAIGALVAGPLSDRYGRKRILLWSVALFAL-FSLAGAVaQSPTQLALMRFL 121
                 6899******************999999********************999999******************999887.66665555************ PP

  MFS_1_like 323 hgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGGllw 374
                  g+ +g++   +v+ v++ +p++ ++ ++ l+ +  f +G++lG +i+  l 
  CTQ30642.1 122 TGLGLGAVMPNCVTLVAEYMPERRKGVMITLMYSG-FNVGSGLGGFIAAGLL 172
                 ******************************97664.7899999998864343 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.026
  MFS_1_like  26 lkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvv 68 
                 l+s gl+ ++ +++t +  l   l+  ++g+l Dr    k+v+
  CTQ30642.1 283 LRSGGLSLQQAAMMTGLFQLGGPLGGILVGMLMDRAS-AKAVI 324
                 5555555555555555555555555555555555543.34444 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.29
  MFS_1_like 153 fGsvGyaifafitGilidhysvnllpysally 184
                 fGs    +  fi+G+ i+  + +l  ys + y
  CTQ30642.1 343 FGSAALSVLIFISGMCINGAQNGLQAYSPAYY 374
                 78888888888888888888887765666555 PP

>> BT1  BT1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   4.7    0.0063        19      12     185 ..      46     209 ..      36     218 .. 0.79
   2 ?   -0.8   0.1      0.12   3.5e+02     130     166 ..     297     333 ..     285     347 .. 0.76
   3 !   15.1   0.2   1.7e-06    0.0051     125     186 ..     382     444 ..     322     454 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0063
         BT1  12 vqfmltdrlgidparyqrlsglatlgwvikplt.allsDgfallGytkrwYlvvscllgaafallygllpakeasakvaaafillsslgkaivdvlsda 109
                 v + l++++gi+ a++  + g a  g +i +l+ + lsD     G +kr  l+ s+ l a+f l+ g++ +++++   +a++ +l+ lg + v      
  CTQ30642.1  46 VAPALIEDWGISRAEMGPILGAAMFGVAIGALVaGPLSDRY---G-RKRI-LLWSVALFALFSLA-GAVAQSPTQ---LALMRFLTGLGLGAVMPNCVT 135
                 56789999999999999999999999999998625799974...3.4444.44555566666666.888888888...888899999999999999999 PP

         BT1 110 lvselarqspkagpsLvSwiwlvsavGgiiasvlsGpLldagktrisvlvsaalqlltvvvflfnwygerknrver 185
                 lv+e++ +++k    +  +++    vG+ ++  +   Ll +++ + +++  ++l+l+ + + ++ + +   n v+r
  CTQ30642.1 136 LVAEYMPERRKGV--MITLMYSGFNVGSGLGGFIAAGLLSHYSWHSALVFGGVLPLVVLPFMIVMLPESAMNMVAR 209
                 9999999888766..9999999999999999888888888899999999999999998888777666666666666 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.12
         BT1 130 wlvsavGgiiasvlsGpLldagktrisvlvsaalqll 166
                  ++  +Gg ++ +l G+L+d  +++ +++ +  l +l
  CTQ30642.1 297 TGLFQLGGPLGGILVGMLMDRASAKAVIAATYFLGCL 333
                 4556788999999999999999999888766555554 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 1.7e-06
         BT1 125 LvSwiwlvsavGgiiasvlsGpLldagktrisvl.vsaalqlltvvvflfnwygerknrvera 186
                  vSw+ ++  +G+i++s l+G+L+ a+  + s++ v+a+ ++l ++  l+   +  k r   a
  CTQ30642.1 382 GVSWMHGIGRTGAILSSTLGGMLMLAVPGHSSIFlVLALPACLAGICILLHRMNHAKPRLTEA 444
                 39*************************999887626677778888887777777777776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3295.74
//
Query:       CTQ30643.1  [L=314]
Description: Transcriptional regulator, LacI family [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-18   65.1   0.6    6.5e-18   64.2   0.6    1.5  1  LacI          Bacterial regulatory proteins, lacI family
    6.2e-09   36.4   0.0    2.4e-08   34.5   0.0    1.8  2  Peripla_BP_3  Periplasmic binding protein-like domain
    2.1e-05   24.8   0.2      6e-05   23.3   0.2    1.7  1  HTH_31        Helix-turn-helix domain
     0.0056   16.7   0.2      0.013   15.5   0.1    1.7  2  HTH_3         Helix-turn-helix
  ------ inclusion threshold ------
      0.066   11.9   0.1       0.11   11.1   0.1    1.3  1  ArgJ          ArgJ family
       0.12   12.2   0.0        0.3   10.9   0.0    1.8  1  HTH_IclR      IclR helix-turn-helix domain
       0.13   11.7   0.2       0.27   10.7   0.2    1.5  1  HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family I


Domain annotation for each model (and alignments):
>> LacI  Bacterial regulatory proteins, lacI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.6   2.6e-21   6.5e-18       1      46 []       4      49 ..       4      49 .. 0.99

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 2.6e-21
                -HHHHHHHCTS-HHHHHHHCTTSSSSTHHHHHHHHHHHHHTTB-TT CS
        LacI  1 tikDVArlAGVSkaTVSrvLnnkerVseetrerVeaameelnYiPn 46
                ti+DV rlAGVSkaTVSrvL++++ V+e+ r+ V++a+e lnY+Pn
  CTQ30643.1  4 TINDVSRLAGVSKATVSRVLSGSRGVKEASRQAVLQAAEALNYRPN 49
                8********************************************9 PP

>> Peripla_BP_3  Periplasmic binding protein-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.77     2e+03      36      43 ..      40      47 ..      16      76 .. 0.49
   2 !   34.5   0.0   9.4e-12   2.4e-08       2     147 ..     162     300 ..     161     309 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.77
                  HHTTSSS- CS
  Peripla_BP_3 36 aleelglp 43
                  a+e+l+++
    CTQ30643.1 40 AAEALNYR 47
                  22222222 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 9.4e-12
                   .HHHHCS--EEEEEE--TTSS-HHHHHHHHHHHHHHTTSSS-EEEEE-S-SS-SSHHHHH.....HHHHHCC-SE.....EEEESSCCHHHHHHHHH CS
  Peripla_BP_3   2 ehLvelGhrriafiggegdrgasasderergfrqaleelglplnetvvaaddpaaaaaaraalllqalklaalPt.....AviaasDelAlgvlqal 93 
                   ++L+++G r+ia+i    ++ + ++d+++ g+++ale++ lp+n+ +v  d  +   a+++  l++++      t     A+++ ++++A+ v+ +l
    CTQ30643.1 162 HYLISQGRRQIALIH---PQSSGFADQVLLGYKHALEKNFLPFNRNLVFLDNTSPSVAVQE--LVNNA------TtlnfnALLVSDEQQAQRVVPQL 247
                   589************...77788*******************9999998887765555555..34332......224555***************** PP

                   CCTT--TTTTEEEEBSS--SCCCSSSS--EEEE--HHHHHHHHHHHHHHHHTT- CS
  Peripla_BP_3  94 reaglrvPedlsvigfddselaalssPplTtvrqpleelGraaaellldllege 147
                   ++ + +vP+ + v+++ +s  +    P + +++  ++ ++ +++++l +  +++
    CTQ30643.1 248 QAFNRAVPQNVMVFSLAGSLQL-PGIPTIPAIEYSMDAMASRIVNWLTEKTDNP 300
                   ***************9975444.34567789***************99887555 PP

>> HTH_31  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.2   2.3e-08     6e-05      18      61 ..       6      51 ..       4      53 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.3e-08
      HTH_31 18 eevAerlgvsestlsrlEqGrrgrp...spavlealaralgldpaer 61
                 +v +++gvs++t+sr+ +G rg +   s++++ ++a+al+  p+  
  CTQ30643.1  6 NDVSRLAGVSKATVSRVLSGSRG-VkeaSRQAVLQAAEALNYRPNMI 51
                6899******************9.7666999*********9888765 PP

>> HTH_3  Helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   5.1e-06     0.013      11      51 ..       4      47 ..       2      51 .. 0.90
   2 ?   -3.5   0.0       4.4   1.1e+04      22      31 ..      75      84 ..      70      87 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.1e-06
                HHHHHHHHHTSSHHHHHHHHTT...SSCSBHHHHHHHHHHHTSE CS
       HTH_3 11 sqeeLAeklGvsrstisriEnG...ernPsletlkklakaLgvs 51
                ++ ++++++Gvs++t+sr  +G     + s + ++  a+aL++ 
  CTQ30643.1  4 TINDVSRLAGVSKATVSRVLSGsrgVKEASRQAVLQAAEALNYR 47
                67899*****************9999999999999999999976 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.4
                SHHHHHHHHT CS
       HTH_3 22 srstisriEn 31
                + s+++++E+
  CTQ30643.1 75 TTSYLYALEK 84
                6677777775 PP

>> ArgJ  ArgJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   4.5e-05      0.11      62     120 ..      18      81 ..       6     105 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.5e-05
                 EEXXXSXHHHHHHHHHHHH.HHHHHHHTSX....GGGEEEEEEEESSXXXXHHHHHHHHHHX.. CS
        ArgJ  62 gnANavtgeqGledaeema.eavaealgik....eeevlvasTGviGerlpmekieagieklve 120
                   + ++ g++G+++a + a  ++aeal+ +    +++ l  sTG iG     ++i++  + l++
  CTQ30643.1  18 TVSRVLSGSRGVKEASRQAvLQAAEALNYRpnmiAQSLLSQSTGCIGVICAQDNINQTTSYLYA 81 
                 556678999***99876551567778866544448899*************9999998876664 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012       0.3      20      40 ..       4      24 ..       1      25 [. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
                BHHHHHHHHTS-HHHHHHHHH CS
    HTH_IclR 20 tlselArrtglpkStvhRlLq 40
                t+ +++r +g++k+tv+R L+
  CTQ30643.1  4 TINDVSRLAGVSKATVSRVLS 24
                789***************986 PP

>> HTH_Tnp_ISL3  Helix-turn-helix domain of transposase family ISL3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2    0.0001      0.27      28      48 ..       3      23 ..       1      24 [. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0001
  HTH_Tnp_ISL3 28 rsvkavArqlgvSwtTVwril 48
                   ++ +v+r+ gvS  TV r+l
    CTQ30643.1  3 STINDVSRLAGVSKATVSRVL 23
                  599****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2399.82
//
Query:       CTQ30644.1  [L=104]
Description: N,N'-diacetylchitobiose-specific enzyme IIB component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-18   67.3   0.0    1.6e-18   67.1   0.0    1.0  1  PTS_IIB   PTS system, Lactose/Cellobiose specific IIB subunit


Domain annotation for each model (and alignments):
>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   9.2e-23   1.6e-18       1      89 [.       3      94 ..       3      95 .. 0.90

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 9.2e-23
                EEEEEESSSHHHHHHHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEESSGG..CTHHHHTT...SEEEEECTTHHHCCHCHHHHHH CS
     PTS_IIB  1 killaCgaGmatSlmaaeklekaakelgieaegeagveleaeeiaddaDlvllapqvrv..kdlarfag...kpvavinikdalgimdgekvlk 89
                ki+l+C+aGm+tSl++  k+ +aa+e+++ ++++a    e +    ++++vll+pqv++  k l+++a+   +pv+ i+++d +g++ g++vl+
  CTQ30644.1  3 KIMLCCSAGMSTSLLV-RKMVEAANERDLPVQIDAYGVSEFDMQFPQYQVVLLGPQVKYmlKTLSDKAAslnIPVQPIDTMD-YGMQRGDNVLN 94
                8***************.***********7777777776666766667************9*999999999999*********.*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 879.97
//
Query:       CTQ30645.1  [L=440]
Description: putative phosphotransferase system, EIIC [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-51  175.8  27.7    1.7e-51  175.2  27.7    1.3  1  PTS_EIIC  Phosphotransferase system, EIIC


Domain annotation for each model (and alignments):
>> PTS_EIIC  Phosphotransferase system, EIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.2  27.7   9.6e-56   1.7e-51       1     323 [.      33     351 ..      33     352 .. 0.95

  Alignments for each domain:
  == domain 1  score: 175.2 bits;  conditional E-value: 9.6e-56
    PTS_EIIC   1 sdgfmlpiplliagGillglgnlpnssdlkglsslgvqtilsslaeilkqagnavfanLpllfaigiaygl..akggkgvaglagligllafnllaais 97 
                 +dgf++++p+ i+g+++l++++ p+s+d+++    g+ ++ + + e l+ ++n++++++  ++++gi+ +l  + + ++v+  +gl++++af l+aa  
  CTQ30645.1  33 RDGFTAALPFMIIGSFMLVFIFPPFSPDTTNGFARGWLDFSQHYREQLMLPFNLSMGVMTFFISVGIGASLgrQFQLDPVM--SGLLAFMAFLLVAAP- 128
                 69********************9999999987779************************************9988999999..********9994433. PP

    PTS_EIIC  98 vlllaagalasakasilgiktlstgvfgaiivgllaaylynkfek.nitikLPeslpffvgkrfvpiittlvvllvvglvllliwpaiqgglnalg..l 193
                     +      a + i+  ++ ++g+f+a+i ++ ++ +y+++++ niti+LP+++p  v+ +f ++i++l v++++   l+l+++a +g+++ +   +
  CTQ30645.1 129 ----Y------ADGKISTQYLSGQGIFTALITAIYSTRVYAWLKQnNITIRLPKEVPTGVARSFEILIPVL-VVIATLHPLNLFIEAQTGMILPQAimH 216
                 ....3......4568********************************************************.99999999***********99988763 PP

    PTS_EIIC 194 l....lggsgsllgvlifgflerllipfGlHhafiapfwftsaggslaianqqlygagkeaahiltgefvs..vmfGgpgatlalyiaaflekkskqkk 286
                 l    + +s+sl ++l+  ++++++++ G+H+ +i++ ++++++ ++ +anq+++ ag  ++h+  ++f++    +Gg+g tl l++  +l+++  +++
  CTQ30645.1 217 LleplVSASDSLPAILLSVLMCQIFWFAGIHGSLIVTGIMNPFWMANLSANQAALAAGTVLPHVYLQGFWDhyLLIGGVGSTLPLAF-LLLRSRATHLR 314
                 36899*********************************************************************************9.888899***** PP

    PTS_EIIC 287 llgsaaltpflfGItepleFgfpfvlnlllfipalla 323
                 ++g++ ++p +f+I+ep++Fg p+++n+++fip++  
  CTQ30645.1 315 TIGKMGIVPSFFNINEPILFGAPIIMNPMMFIPFVCV 351
                 **********************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 3751.42
//
Query:       CTQ30646.1  [L=100]
Description: N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-31  108.3   2.1    1.7e-31  108.1   2.1    1.0  1  PTS_IIA   PTS system, Lactose/Cellobiose specific IIA subunit


Domain annotation for each model (and alignments):
>> PTS_IIA  PTS system, Lactose/Cellobiose specific IIA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   2.1   9.5e-36   1.7e-31       2      94 .]       7      99 ..       6      99 .. 0.98

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 9.5e-36
     PTS_IIA  2 iameiIlhaGeArslameAlkaakegdfeeaeellkeAeeelkeAhkaqteliqkeasgekvevslllvHAqDhLmtaellkdlakelielyk 94
                ++meiI++aG++rsl++eAl+aa+ g+++ea+ ll+eA+   ++Ah++qt+li ++a++ + +++l++vHAqDhLm++ l+++  +eli+ly+
  CTQ30646.1  7 AVMEIIVNAGQSRSLCFEALHAARIGNIDEARLLLNEADGYARRAHQMQTQLIGQDAGEARQPMTLIMVHAQDHLMNSLLAREFSEELIHLYQ 99
                68*****************************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 880.99
//
Query:       CTQ30647.1  [L=343]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-24   86.5   0.0    2.2e-24   85.9   0.0    1.3  1  DDE_3     DDE superfamily endonuclease
    1.8e-11   43.5   0.5    4.5e-10   39.0   0.1    2.8  2  HTH_23    Homeodomain-like domain
    1.4e-08   35.2   0.3    1.4e-08   35.2   0.3    2.3  3  HTH_32    Homeodomain-like domain
    2.2e-08   34.0   1.4    7.5e-08   32.3   0.5    2.1  2  HTH_29    Winged helix-turn helix
    5.4e-07   29.6   0.9    2.7e-06   27.4   0.2    2.3  2  HTH_28    Helix-turn-helix domain
    1.8e-06   27.5   0.4    1.8e-06   27.5   0.4    2.7  3  HTH_33    Winged helix-turn helix
  ------ inclusion threshold ------
      0.079   12.7   0.1       0.19   11.5   0.1    1.7  1  HTH_38    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> DDE_3  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0   8.6e-28   2.2e-24       2     142 ..     177     316 ..     176     320 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.9 bits;  conditional E-value: 8.6e-28
       DDE_3   2 vvfiDEsgfqlgtvrrrawakkGkrerleeygrrgrvnligaldekgglafvtfeetlnaedfaeflerlletalqakkivlilDnasiHkseslrelv 100
                 v++ DE+ ++l++  +  w+ +G+++r+ + g++++ +l gal   +g++ ++  ++ +++ f+++l++l+ t+++ak+i li+Dn  iHks++ ++++
  CTQ30647.1 177 VFYEDEVDIHLNPKIGADWQLRGQQKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKSSALFIALLKHLKATYRRAKTITLIVDNYIIHKSRETQRWL 275
                 7899*********************************************************************************************** PP

       DDE_3 101 eeeadrlellylPpySPelNpiEivwsklkrellkrrsfksl 142
                 ++   +++++y P ySP+ N +E++w+ l + + ++++ +s 
  CTQ30647.1 276 KA-NPKFRVIYQPVYSPWVNHVERLWQALHDTITRNHQCRSM 316
                 **.9*****************************998887776 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.1   1.8e-13   4.5e-10       5      50 .]      28      73 ..      24      73 .. 0.95
   2 ?    1.5   0.0      0.11   2.8e+02      28      38 ..     126     136 ..     125     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.8e-13
      HTH_23  5 reRlrillllaeGlsvreIAreLgvsrrTvyrwlkryreeGlegll 50
                 +Rl ++l+l +G +v+++Ar L + r+ v rw++++  +G+egl+
  CTQ30647.1 28 ARRLTAMLMLHRGERVSDVARTLCCARSSVGRWINWFTHSGIEGLK 73
                79***********************************99*****96 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
      HTH_23  28 gvsrrTvyrwl 38 
                   +  Tv+rwl
  CTQ30647.1 126 QLHAATVRRWL 136
                 56889*****7 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.2   8.3e+03      46      65 ..      25      44 ..       8      46 .. 0.53
   2 !   35.2   0.3   5.5e-12   1.4e-08       2      73 .]      57     136 ..      56     136 .. 0.89
   3 ?   -3.1   0.0       5.1   1.3e+04      29      47 ..     256     274 ..     243     280 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.2
      HTH_32 46 rWsprqlaarlaeregvkvS 65
                + ++r+l a l  ++g++vS
  CTQ30647.1 25 KNHARRLTAMLMLHRGERVS 44
                44667777777444455665 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 5.5e-12
      HTH_32   2 vsrwlkRyneeGlegLkdrprrgrprklsdevrariiallreep.........rWsprqlaarlaeregvkvShstvyriL 73 
                 v rw++ +  +G+egLk  p  gr r+++ e+   +++ l +++         rWs+++la +++e  g +++  tv+r+L
  CTQ30647.1  57 VGRWINWFTHSGIEGLKSLPA-GRSRRWPFEHICTLLRELIKHSpgdfgyqrsRWSTELLAIKINEITGCQLHAATVRRWL 136
                 89***************9954.69999***999888888877644*******************8888999********98 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5.1
      HTH_32  29 lsdevrariiallreeprW 47 
                 ++  v  +ii   re  rW
  CTQ30647.1 256 ITLIVDNYIIHKSRETQRW 274
                 4444445555444333344 PP

>> HTH_29  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.5   2.9e-11   7.5e-08       1      54 [.      30      81 ..      30      83 .. 0.93
   2 ?   -0.8   0.0      0.61   1.6e+03      24      33 ..     127     136 ..     125     137 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 2.9e-11
      HTH_29  1 RaqallllaeGvstvsqiAkllglsrrtvyrwlkrfeegGlaalldrrrsgrpr 54
                R++a l+l +G+ +vs++A+ l++ r++v rw++ f   G+++l++ ++ gr+r
  CTQ30647.1 30 RLTAMLMLHRGE-RVSDVARTLCCARSSVGRWINWFTHSGIEGLKSLPA-GRSR 81
                899*********.8********************************998.6665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.61
      HTH_29  24 lsrrtvyrwl 33 
                 l+  tv+rwl
  CTQ30647.1 127 LHAATVRRWL 136
                 6778*****7 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.2   1.1e-09   2.7e-06       1      51 [.      29      83 ..      29      84 .. 0.93
   2 ?   -0.4   0.0       0.5   1.3e+03      24      33 ..     127     136 ..     125     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.1e-09
      HTH_28  1 qRleiikllaaGhsvreaArelgisrrtvyrWikryeegGiagLvp....rrrrp 51
                +Rl++++ l +G++v+++Ar l + r++v rWi+ + + Gi+gL+     r+rr+
  CTQ30647.1 29 RRLTAMLMLHRGERVSDVARTLCCARSSVGRWINWFTHSGIEGLKSlpagRSRRW 83
                69*******************************************9777777766 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.5
      HTH_28  24 isrrtvyrWi 33 
                 ++  tv+rW+
  CTQ30647.1 127 LHAATVRRWL 136
                 6778*****7 PP

>> HTH_33  Winged helix-turn helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.4     7e-10   1.8e-06       3      52 ..     108     157 ..     106     160 .. 0.95
   2 ?   -0.6   0.0      0.41   1.1e+03      29      42 ..     241     254 ..     235     255 .. 0.87
   3 ?   -2.6   0.1       1.8   4.5e+03      25      33 ..     314     322 ..     313     324 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 7e-10
      HTH_33   3 grWtlarlaqlieerfgvsysvsgvyrlLkrlGfsyqkPrprapkqdpea 52 
                  rW+++ la  i e +g +++ ++v+r+L  +G+ +++++p+   +dp++
  CTQ30647.1 108 SRWSTELLAIKINEITGCQLHAATVRRWLPSAGLVWRRAAPTLRIRDPHK 157
                 69*********************************************987 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.41
      HTH_33  29 rlLkrlGfsyqkPr 42 
                  lLk+l+ +y++++
  CTQ30647.1 241 ALLKHLKATYRRAK 254
                 69********9986 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.8
      HTH_33  25 sgvyrlLkr 33 
                 +++++lLk+
  CTQ30647.1 314 RSMWQLLKK 322
                 789****97 PP

>> HTH_38  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   7.3e-05      0.19      11      39 ..      31      59 ..      28      62 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.3e-05
      HTH_38 11 eeIerllaeGlslreIArrLgrspsTIsR 39
                 +   +l +G+ ++++Ar L++++s++ R
  CTQ30647.1 31 LTAMLMLHRGERVSDVARTLCCARSSVGR 59
                55667899******************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 2906.26
//
Query:       CTQ30648.1  [L=245]
Description: Manganese transport system ATP-binding protein MntB [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.7e-26   90.9   0.0    1.7e-25   90.1   0.0    1.4  1  ABC_tran      ABC transporter
    6.1e-08   32.8   4.6      4e-06   26.9   0.8    2.1  2  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    7.1e-06   25.7   0.8    1.6e-05   24.5   0.8    1.5  1  AAA_29        P-loop containing region of AAA domain
    8.1e-06   25.4   0.7    0.00049   19.6   0.3    2.2  2  SMC_N         RecF/RecN/SMC N terminal domain
      3e-05   24.6   0.7    4.5e-05   24.0   0.7    1.2  1  AAA_23        AAA domain
    0.00086   19.1   0.5     0.0012   18.6   0.5    1.2  1  AAA_15        AAA ATPase domain
     0.0023   17.6   0.1     0.0043   16.6   0.1    1.5  1  AAA_25        AAA domain
     0.0025   18.2   0.2      0.004   17.5   0.2    1.6  1  AAA_16        AAA ATPase domain
     0.0047   16.7   0.0       0.01   15.6   0.0    1.5  1  Phage_AlpA    Prophage CP4-57 regulatory protein (AlpA)
     0.0071   16.3   0.0      0.014   15.4   0.0    1.5  1  NACHT         NACHT domain
  ------ inclusion threshold ------
      0.014   15.1   1.9      0.033   13.9   0.2    2.1  2  AAA_30        AAA domain
      0.015   15.4   0.1      0.032   14.4   0.1    1.6  1  AAA_33        AAA domain
      0.017   14.5   0.1      0.031   13.7   0.1    1.4  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.017   14.0   3.6      0.022   13.6   2.0    1.8  2  ABC_ATPase    Predicted ATPase of the ABC class
      0.018   15.2   0.5       0.15   12.3   0.5    2.1  1  SbcCD_C       Putative exonuclease SbcCD, C subunit
      0.022   15.1   2.0       0.07   13.4   0.2    2.1  2  AAA_22        AAA domain
      0.034   14.1   0.2      0.065   13.1   0.2    1.4  1  RsgA_GTPase   RsgA GTPase
      0.053   13.1   0.1      0.086   12.4   0.1    1.3  1  AAA_27        AAA domain
      0.061   12.2   0.0      0.099   11.5   0.0    1.3  1  AAA_10        AAA-like domain
       0.07   13.0   0.1       0.14   12.0   0.1    1.7  1  ATPase_2      ATPase domain predominantly from Archaea
       0.12   12.4   0.3        3.7    7.6   0.1    2.3  2  AAA_5         AAA domain (dynein-related subfamily)
       0.15   12.4   0.5       0.67   10.4   0.5    2.0  1  AAA           ATPase family associated with various cellular 


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   2.1e-28   1.7e-25       2     137 .]      22     161 ..      21     161 .. 0.82

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 2.1e-28
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...................HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................xx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...................es 81 
                 +n++ ++++g+++ai+G+nG+GKStLlk +ag l p +G+ +++            +++i++lpq ++l+++  +  +                   e+
  CTQ30648.1  22 QNITGTIQKGSLTAIIGPNGSGKSTLLKGIAGILAPLSGSCTVE-----------PKARIAYLPQISELDRTFPATVSdlvslglwperglfrhhriED 109
                 79***************************************777...........55555555555444444421111235555555556666689999 PP

                 HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++++++al ++gl +++++ +    s LSgGq qr   ar++l++++++llDEp++
  CTQ30648.1 110 RKRLTDALGSVGLAGFEKRQL----SALSGGQLQRALFARVILQQANIILLDEPFN 161
                 999******************....*****************************86 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.8   4.9e-09     4e-06       1      23 [.      33      55 ..      33      86 .. 0.84
   2 !    8.0   0.2    0.0027       2.2     232     294 ..     128     187 ..      85     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 4.9e-09
      AAA_21  1 lnvliGpNgsGKSnLLdaldlla 23
                l+++iGpNgsGKS+LL+ + ++ 
  CTQ30648.1 33 LTAIIGPNGSGKSTLLKGIAGIL 55
                79*****************9885 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0027
      AAA_21 232 lparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQvil 294
                 ++++ lS G+++ + ++  +l+++    ++l+DEp n ++   +  ll l+++ ++ +  v++
  CTQ30648.1 128 RQLSALSGGQLQRALFARVILQQA---NIILLDEPFNAIDATTIDDLLVLINRWHAQKRTVLA 187
                 445678999999966666666666...89************9999999999776665666665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.8     2e-08   1.6e-05      19      48 ..      28      57 ..      21      62 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2e-08
      AAA_29 19 idlkg.atlltGpsGsGKSTllDAiqalLvp 48
                i+ kg  t ++Gp+GsGKSTll  i+ +L p
  CTQ30648.1 28 IQ-KGsLTAIIGPNGSGKSTLLKGIAGILAP 57
                44.4559*****************9999988 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.3     6e-07   0.00049      24      45 ..      31      52 ..      19      61 .. 0.79
   2 ?    4.1   0.0     0.032        26     136     187 ..     132     179 ..      88     199 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 6e-07
                SSEEEEEESTTSSHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 24 ksftaivGpNGSGKsnlldAil 45
                 s+tai+GpNGSGKs ll  i 
  CTQ30648.1 31 GSLTAIIGPNGSGKSTLLKGIA 52
                368**************99886 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.032
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeks 187
                 +LSgG+ +      lfA    ++a + llDe   a+D++ +  +  l+++ +
  CTQ30648.1 132 ALSGGQLQR----ALFARVILQQANIILLDEPFNAIDATTIDDLLVLINRWH 179
                 789998763....4688888999****************9999999988644 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.7   5.5e-08   4.5e-05      20      43 ..      32      55 ..      20      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 5.5e-08
      AAA_23 20 gltlItGpNGaGKTTildAiklaL 43
                 lt+I+GpNG+GK+T+l  i  +L
  CTQ30648.1 32 SLTAIIGPNGSGKSTLLKGIAGIL 55
                59*****************98776 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.5   1.5e-06    0.0012      21      43 ..      28      51 ..      20      65 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.5e-06
      AAA_15 21 lsee.ltvliGkNnsGKSsileal 43
                +++  lt +iG+N+sGKS++l+ +
  CTQ30648.1 28 IQKGsLTAIIGPNGSGKSTLLKGI 51
                455559***************988 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   5.3e-06    0.0043      25      58 ..      23      56 ..      17     101 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.3e-06
      AAA_25 25 lvkgllpagelallaGapgtGKttlaldlalava 58
                 + g + +g+l++++G+ g+GK+tl+  +a  +a
  CTQ30648.1 23 NITGTIQKGSLTAIIGPNGSGKSTLLKGIAGILA 56
                68899********************988776666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.2     5e-06     0.004      17      76 ..      26      79 ..      18     204 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5e-06
      AAA_16 17 ervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql.esaipysalaqal 76
                +++ +g  +l+ ++G+ G+GKs+l++ ++  + +     l+g c+   ++ i+y++ ++ l
  CTQ30648.1 26 GTIQKG--SLTAIIGPNGSGKSTLLKGIA-GILAP----LSGSCTVEpKARIAYLPQISEL 79
                455555..7999*****************.67777....9999999955558886633333 PP

>> Phage_AlpA  Prophage CP4-57 regulatory protein (AlpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.3e-05      0.01      26      46 ..     196     216 ..     182     217 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-05
  Phage_AlpA  26 dgeFPkkvkLGvrsVgWlesE 46 
                 ++ FP+++ L +++V+W+e E
  CTQ30648.1 196 RNHFPQAILLNGKLVAWDETE 216
                 799****************98 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.7e-05     0.014       2      25 ..      33      56 ..      32      92 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-05
                CEEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawa 25
                l ++ G++GsGK+tLl+++a  +a
  CTQ30648.1 33 LTAIIGPNGSGKSTLLKGIAGILA 56
                5789***************97665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   4.1e-05     0.033      15      43 ..      29      56 ..      19      71 .. 0.81
   2 ?    0.4   0.1      0.57   4.7e+02     125     143 ..     127     145 ..     110     198 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 4.1e-05
      AAA_30 15 tsgdrvavltGpAGtGKttalkalreawe 43
                ++g  ++++ Gp G+GK+t+lk+++ +++
  CTQ30648.1 29 QKG-SLTAIIGPNGSGKSTLLKGIAGILA 56
                445.599****************998776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.57
      AAA_30 125 erQlasVeaGgvlrdlvea 143
                 +rQl++ + G++ r l++ 
  CTQ30648.1 127 KRQLSALSGGQLQRALFAR 145
                 6777777777777777643 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   3.9e-05     0.032       2      47 ..      34     126 ..      33     194 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.9e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg....avllssdt................................lrrrlfgtdqqskt...........d 47 
                 + ++G++GsGKstl+++++  l+     ++++  +                                l+r ++ +d++++t           +
  CTQ30648.1  34 TAIIGPNGSGKSTLLKGIAGILAplsgSCTVEPKAriaylpqiseldrtfpatvsdlvslglwpergLFRHHRIEDRKRLTdalgsvglagfE 126
                 5689************99655544445555555556666666666666666666666666666666555555555555555555555555551 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   3.8e-05     0.031      27      56 ..      36      65 ..      30      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.8e-05
  Mg_chelatase 27 lvGppGsGKtmlakrlpsllpplseeeale 56
                  ++Gp GsGK+ l k ++++l+pls + ++e
    CTQ30648.1 36 IIGPNGSGKSTLLKGIAGILAPLSGSCTVE 65
                  79*********************9877776 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.0   2.7e-05     0.022     232     265 ..      19      52 ..      16      55 .. 0.84
   2 ?   -1.1   0.0      0.75   6.1e+02     324     352 ..     134     162 ..     129     191 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.7e-05
                 TTTEEEEEEEE-SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 232 pngkkvsGmgipkG.vtlIvGggfhGKsTLLeAle 265
                 p  ++++G  i+kG +t+I+G++  GKsTLL+ ++
  CTQ30648.1  19 PAIQNITGT-IQKGsLTAIIGPNGSGKSTLLKGIA 52 
                 666788995.67777****************9885 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.75
                 -HHHHHHHHHHHHHHTT-SEEEEEGGGS- CS
  ABC_ATPase 324 SGStsqAanimealeagakllLiDEDtsA 352
                 SG   q a  ++ +  +a+++L+DE   A
  CTQ30648.1 134 SGGQLQRALFARVILQQANIILLDEPFNA 162
                 7888888889999999999*****97666 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   0.00019      0.15      64      88 ..     151     175 ..     112     177 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00019
     SbcCD_C  64 lrlvfLDEAFsklDeesiatllell 88 
                   +++LDE F+ +D+++i+ ll l+
  CTQ30648.1 151 ANIILLDEPFNAIDATTIDDLLVLI 175
                 479****************998776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   8.6e-05      0.07       4      23 ..      30      49 ..      27      58 .. 0.88
   2 ?    0.9   0.1      0.62     5e+02      63     112 ..     116     171 ..     105     193 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.6e-05
      AAA_22  4 tagilvvtGesGtGKTtllr 23
                + ++++++G+ G+GK+tll+
  CTQ30648.1 30 KGSLTAIIGPNGSGKSTLLK 49
                67899*************98 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.62
      AAA_22  63 alglelka..erlsseell.ealeqalrarav...ielliiDEaqh.lrseealeeL 112
                 alg+ + a  e  ++++l   +l++al ar       ++++DE  + +  ++ + +L
  CTQ30648.1 116 ALGSVGLAgfEKRQLSALSgGQLQRALFARVIlqqANIILLDEPFNaI-DATTIDDL 171
                 444444444446666666667777777777667666799999965534.44444444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2     8e-05     0.065      90     121 ..      21      53 ..       7      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8e-05
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallp 121
                  +++++  +++ ++++++G+ G GKStL++ +++
   CTQ30648.1  21 IQNITGTIQKgSLTAIIGPNGSGKSTLLKGIAG 53 
                  566777777779****************98765 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   0.00011     0.086      25      49 ..      30      54 ..       7      59 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
      AAA_27 25 eadlhliyGpNEAGKstalrAisdl 49
                + +l+ i+GpN +GKst+l++i  +
  CTQ30648.1 30 KGSLTAIIGPNGSGKSTLLKGIAGI 54
                567999**************99766 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012     0.099      10      43 ..      20      53 ..      16      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
      AAA_10 10 anqevkgsktnasasliiGdlGnGKSvlakllvl 43
                a q++ g+ ++ s ++iiG+ G GKS l k +  
  CTQ30648.1 20 AIQNITGTIQKGSLTAIIGPNGSGKSTLLKGIAG 53
                5699****9999*9**************998765 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00018      0.14       8      43 ..      21      54 ..      18     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
    ATPase_2  8 lkeleeilerepneiyfiYGpegsGKtaLlkeiien 43
                ++++   +++   +   i Gp gsGK++Llk i+  
  CTQ30648.1 21 IQNITGTIQK--GSLTAIIGPNGSGKSTLLKGIAGI 54
                5556666665..5677899************98765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0045       3.7       4      23 ..      36      55 ..      34      69 .. 0.85
   2 ?    2.7   0.0      0.14   1.1e+02      64      93 ..     149     179 ..     123     197 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0045
                EE--SSSSHHHHHHHGGGGB CS
       AAA_5  4 LvGppGtgKselaerlaaal 23
                ++Gp G+gKs+l + +a  l
  CTQ30648.1 36 IIGPNGSGKSTLLKGIAGIL 55
                79**********99998776 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.14
                 -G-SEEEEESGGG--.HHHHHHHHHHHHSSE CS
       AAA_5  64 regeilvlDEverae.sevlnsLlslleerr 93 
                 +++ i++lDE ++a    +++ Ll l+++ +
  CTQ30648.1 149 QQANIILLDEPFNAIdATTIDDLLVLINRWH 179
                 4899999*99666654999999999998755 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   0.00082      0.67       3      22 ..      36      55 ..      34     204 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00082
                EESSTTSSHHHHHHHHHHHH CS
         AAA  3 lyGppGtGKTllakavakel 22
                ++Gp G GK++l k +a  l
  CTQ30648.1 36 IIGPNGSGKSTLLKGIAGIL 55
                68***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1789.08
//
Query:       CTQ30649.1  [L=657]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.2e-181  603.7   1.8   4.8e-181  603.5   1.8    1.0  1  DUF839      Bacterial protein of unknown function (DUF839)
     0.0074   16.1   0.1     0.0074   16.1   0.1    1.9  2  TAT_signal  TAT (twin-arginine translocation) pathway signal 


Domain annotation for each model (and alignments):
>> DUF839  Bacterial protein of unknown function (DUF839)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  603.5   1.8  5.4e-185  4.8e-181       2     524 .]      78     613 ..      77     613 .. 0.95

  Alignments for each domain:
  == domain 1  score: 603.5 bits;  conditional E-value: 5.4e-185
      DUF839   2 gfgplaaklddlvavpegyeakvlvrwGdk..lfagapefd....qsaeaqekqvgynhDgmaffpls...rsadeglLvvNhEytseeilfekekpsp 91 
                 gf+++ +++ d+v+vpegy a+++ rwGd   +  + pef     +++++q+ q g++hDgma f+l    ++  +glL++NhEy+++ +lf k   ++
  CTQ30649.1  78 GFTSIPVSTADTVTVPEGYIARPFYRWGDAvgIKGNLPEFKfdasNTTDEQAAQAGMHHDGMAWFSLPqgkENPAHGLLALNHEYIDNGMLF-KDGTAN 175
                 79999************************83357999**99999999*******************985445566****************9.88999* PP

      DUF839  92 vtaelvekelaalGvtvveisrkagkwqvvrdsklnrritantemrlsGPaagsellktsadaegvkilGTanNCagGtTpWGtyLtcEEnfngyfgge 190
                  + ++ +k ++a+G +v+e+++ +  wqvvr s++ rrit nt+m+lsGPa+ ++l+kt+ad++g  +lGT++NCa+G TpWGtyLtcEEn+++ f  +
  CTQ30649.1 176 WDLDKARKGQNAMGISVIEVKKDNVGWQVVRPSSFARRITVNTPMQLSGPARHQALMKTAADPQGEVVLGTMQNCANGKTPWGTYLTCEENWSDIFVKK 274
                 ********************999**************************************************************************99 PP

      DUF839 191 eavkadqkryGit.gttgy......erFdva...nepkkfGyvvEvdpvdprstpvkrtalGrfkHEaaavvveddkrvvvYlgdDerkeylYkFvsnd 279
                  + +  +kryGi+   ++y      erF v+   nep++fG+vvE+dp+dp+stp+k+talGrfkHE+aav ++ d+rvvvY+gdD+++ey+YkF+s++
  CTQ30649.1 275 APRNVLEKRYGISdSDESYrwnevdERFSVDktpNEPNRFGWVVEIDPYDPTSTPRKHTALGRFKHEGAAVTLAGDNRVVVYMGDDQKFEYIYKFISEN 373
                 889999*******7777789**********99******************************************************************* PP

      DUF839 280 rvgtgnskansaLldeGtLyvakfnedgtveWvplvegqggltaengfadqaevlvktrlaadkvGatkmdrpEdievnPttg.evyvvltnnkkrde. 376
                 ++++g++kan++Ll+ GtLyva+fn+dg+++W+pl +g++gl++  gf +q++ l+ktrlaad vGatkmdrpE+i+v  +++ +vy++ltnn+ r++ 
  CTQ30649.1 374 KYDPGDRKANMQLLESGTLYVARFNDDGSGDWLPLIFGENGLDQSKGFDNQGDLLIKTRLAADTVGATKMDRPEWIAVDTHAKgSVYCTLTNNSDRGKe 472
                 ******************************************************************************999888**********88877 PP

      DUF839 377 ..skidsanpraknkyGqivrlieesrdvaatkftwdlfllaGdpedakaasaessegndlespDnlafdpaGrlwiatDgsgskdellgvtaeGkvyn 473
                    ++d+anpra+n++G+i++++ee++d a++kftw++++laG   + + + ++s +g+ + spD+l fd +G lwi+tD s+s+ +          ++
  CTQ30649.1 473 gkAPVDAANPRANNQFGHIMHWREERADPASAKFTWNILVLAGRTDSDDPKAKGSMQGAEFGSPDGLSFDHRGVLWIQTDVSSSTIN----------KK 561
                 88999**************************************9777777*********************************8755..........23 PP

      DUF839 474 larndGnn.vltsdaargevkrfltepegsEvtGvtfsPdgktlfvnvqhPg 524
                   +  Gnn + +  + ++e +rflt+p+g+E+tG++f+Pd++tlf+n+qhPg
  CTQ30649.1 562 AYEGMGNNqMIATLPGTNEYRRFLTGPRGCEITGIAFTPDNRTLFINIQHPG 613
                 33457888899999*************************************9 PP

>> TAT_signal  TAT (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   8.3e-07    0.0074       2      20 ..      34      52 ..      34      55 .. 0.92
   2 ?   -4.1   2.3       1.9   1.7e+04      15      22 ..     342     349 ..     342     349 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.3e-07
  TAT_signal  2 lSRRdFLKgsAAaaAAaal 20
                +SRR FL+ + +a+AA+ +
  CTQ30649.1 34 MSRRRFLQMGMVAGAAVSF 52
                8***************976 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.9
  TAT_signal  15 aAAaalgg 22 
                 +AA++l+g
  CTQ30649.1 342 GAAVTLAG 349
                 67777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 5129.28
//
Query:       CTQ30650.1  [L=418]
Description: putative integrase; KpLE2 phage-like element [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-19   69.2   0.0    7.7e-19   68.1   0.0    1.5  1  Phage_integrase  Phage integrase family
    7.9e-18   64.6   0.0    1.4e-17   63.8   0.0    1.5  1  Arm-DNA-bind_3   Arm DNA-binding domain
    0.00013   22.1   0.0    0.00029   21.1   0.0    1.6  1  Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain


Domain annotation for each model (and alignments):
>> Phage_integrase  Phage integrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   1.3e-22   7.7e-19      11     170 ..     212     383 ..     204     385 .. 0.89

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 1.3e-22
                      HHHCCGC..HHHHHHHHHHHHHHHHT--HHHHTT-BGGGEECTTTEEEEE............EEECSSSSEEEEECTHHHHHHHHHHHHHHCHC CS
  Phage_integrase  11 llaalee..slkirdklllellyetGlRisEllsLrvkdldlengvilvh............eregKgskeravplseealellkellskalee 90 
                      ll+ +e   +    ++l++ l++   +R sEl+  r++++d+ n+v++++             r  K++  ++vplse+    lk++ + +   
       CTQ30650.1 212 LLERIEAyhQGRELTRLAVLLMLHVFIRSSELRFARWSEIDFTNRVWTIPatrepiigvrysGRGAKMRMPHIVPLSEQSIAILKQIKDIT--- 302
                      555555554456678999*******************************************99999***********88888888777777... PP

                      CTTTSBSSBET..TSSB--HHHHHHHHHHHHHHCT-SSC--TTHHHHHHHHHHHHHC.TSHHHHHHHHT-SSCCHH.HHHHCCC CS
  Phage_integrase  91 aeksellfask..rgkplsrqtvrkafkraveeagiekpltpHtlRhsfataLleag.vdlrvvqkllGHssistt.qiYthva 170
                        ++el+f+    + kp++++tv+ka++ +++ ++++  + +H +R  +++aL+e+g +  ++v++ + H++ +t+ + Y+h+a
       CTQ30650.1 303 -GNNELIFPGDhnPYKPMCENTVNKALRVMGYDTKKD--ICGHGFRAMACSALMESGlWAKDAVERQMSHQERNTVrMAYIHKA 383
                      .777*****997789*****************98777..******************557789*******************97 PP

>> Arm-DNA-bind_3  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   2.4e-21   1.4e-17       1      73 [.       3      87 ..       3      88 .. 0.91

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 2.4e-21
  Arm-DNA-bind_3  1 LTdkaikaladsd.kklprd.....GLglrvtpsGaktfvlryr.........lGrypavslaeARkkarelraliaqGiDPaeekka 73
                    LTd++i++l++sd      +     GL+l v+p G++ ++l+yr         lG ypa+sl++AR++++ +r+++a  i+P+++++a
      CTQ30650.1  3 LTDAKIRTLKPSDkPF---KvsdshGLYLLVKPGGSRHWYLKYRisgkesriaLGAYPAISLSDARQQREGIRKMLALNINPVQQRAA 87
                    8*********999333...23458***************************777*******************************987 PP

>> Phage_int_SAM_3  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   4.8e-08   0.00029       2      54 ..      98     149 ..      97     152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 4.8e-08
                      .HHHHHHHHHHHHHHH-HHHHHHHHHHHTTTHHHHTTSSBGGG--HHHHHHHH CS
  Phage_int_SAM_3   2 FsefleeWleeykprvkesTyatyksiiknhIlPyFgniklkkItpadiqkfq 54 
                      F+ ++  W +  + +++ +T ++     +nhI P++gn+++++++p++ +++ 
       CTQ30650.1  98 FKNVALAWHKSNR-KWSQNTADRLLASMNNHIFPVIGNLPVSELKPRHFIDLL 149
                      7788888888877.899*******************************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2967.13
//
Query:       CTQ30651.1  [L=57]
Description: hypothetical protein CH1034_380004 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       175  (0.00976072); expected 358.6 (0.02)
Passed bias filter:                      144  (0.00803168); expected 358.6 (0.02)
Passed Vit filter:                         4  (0.000223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 465.24
//
Query:       CTQ30652.1  [L=97]
Description: Iron ABC superfamily ATP binding cassette transporter [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       272  (0.015171); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 819.57
//
Query:       CTQ30653.1  [L=270]
Description: putative iron(III) ABC transporter periplasmic-binding protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-22   78.7   0.0    5.6e-22   78.5   0.0    1.1  1  Peripla_BP_2    Periplasmic binding protein
  ------ inclusion threshold ------
       0.18   11.8   0.0       0.29   11.1   0.0    1.3  1  Thioredox_DsbH  Protein of unknown function, DUF255


Domain annotation for each model (and alignments):
>> Peripla_BP_2  Periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.0   6.3e-26   5.6e-22      10     231 ..       3     239 ..       1     244 [. 0.87

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 6.3e-26
                   HHHHHTT-GGGEEEB-GGG--GGGGGGT.....TS-BSBESSSB-HHHHHHH--SEEEE-GGG.......GGGHHHHHHHS-EEE----TTS..... CS
  Peripla_BP_2  10 eillalGatdkvvgvdtttsdpldadklee...aivevgadgeidvEklaalkPDlvilskgl....gltdedeellksgiptvivessntg..... 94 
                   e+ +al + d++vg  + + +    ++ ++   +i+e  a++ +++E+l+a+ PD  ++  ++    g     + l k gi+t++  +s+++     
    CTQ30653.1   3 EMAFALHLQDRIVGLTGISGWYKMTPEFKKamgSIPE-LAPKYPTLETLLAAEPDFFFAGWNYgmkvGGEVTPDTLSKYGIKTFVLSESCVFttahk 98 
                   6677777788888877777777777766666645555.58899*********************99877777889999******************* PP

                   .....HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-TT.-EEEEEEEETTE..EEEE-TTSTTTHHHHTS--EESTTT--STT-EEE-H CS
  Peripla_BP_2  95 .....eslkeqiralgellgledeaeklvaeidsklaaaksaidsekpkpvlvfggadeggyvvagsnsyigdlldalgieniaaeskkseyeeisa 186
                        + l++ + +lg+++g+ + a+ lv+ ++++l ++ + ++   p +v+v+ ++++  ++ +g + + +++++a+g++n+ ++    ++++ s+
    CTQ30653.1  99 nkatmDLLYNDVLTLGKIFGKRNDAQSLVSGWKKRLNELPKPAAGTRPLKVFVYDSGED-KPFTSGKYAMPTAIIEAAGGKNVMEAV-DTSWGTTSW 193
                   ********************************************996666666665555.89999********************99.********* PP

                   HHHHHH--SEEEEEEH.HHHT-S--HHHHT-SHHHHTSHHHHTT-E CS
  Peripla_BP_2 187 Eqilasdpdvifvsgr.aeadnktgleflkenpllaelpAvkngrV 231
                   E ++a +pd i+  +    + +++   fl+++pl + +pAv+++r 
    CTQ30653.1 194 ESVAATEPDFIILLDYqTGSGADALRHFLENHPLMKLTPAVQHHRY 239
                   ****************6666677777777777***********985 PP

>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.2e-05      0.29     100     148 ..     142     192 ..     130     206 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.2e-05
  Thioredox_DsbH 100 sggWPlnvfltp..dlkpffggtYfpkeeregrpgflevlekiaelweeer 148
                      g+ Pl+vf+ +  + kpf +g Y  +++  ++ g ++v+e++++ w +++
      CTQ30653.1 142 AGTRPLKVFVYDsgEDKPFTSGKYAMPTAIIEAAGGKNVMEAVDTSWGTTS 192
                     6889******8756889******************************8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       233  (0.0129957); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2176.99
//
Query:       CTQ30654.1  [L=339]
Description: conserved membrane hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.5e-82  274.6  34.9      1e-81  274.4  34.9    1.0  1  FecCD         FecCD transport family
  ------ inclusion threshold ------
      0.091   13.0   0.1      0.091   13.0   0.1    3.4  4  DUF1294       Protein of unknown function (DUF1294)
       0.49    9.8  20.7        0.1   12.1  16.1    2.3  1  ABC-3         ABC 3 transport family


Domain annotation for each model (and alignments):
>> FecCD  FecCD transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.4  34.9   1.7e-85     1e-81       2     312 .]      18     331 ..      16     331 .. 0.98

  Alignments for each domain:
  == domain 1  score: 274.4 bits;  conditional E-value: 1.7e-85
       FecCD   2 lllllllslllgavkispsevfeallgka...dsleaeivlelrlprvlaallvGaaLavaGallQtvtrNpLadPsilGissgaalgavlalllllgs 97 
                 l+ l+l+s++ g+v++s+ +v+ al   +   + + + iv++lr+pr+l+ +l+Ga+La+ GallQt+trN LadP + G+ssga++gavl+++ +   
  CTQ30654.1  18 LIGLMLFSITRGTVSLSLMQVLGALKLVDepvSAMVSRIVTDLRVPRMLLSVLTGAGLAMVGALLQTTTRNDLADPFLFGLSSGASAGAVLVITRFGDR 116
                 67799*****************9987655778999999********************************************************9999* PP

       FecCD  98 lslfalplaaflgallalllvlllarkrkgasplkliLaGiavsallsaltsllllllneealesilfwllGslsgaswskvllllvllllllllllll 196
                 l++ +lp+ af+g++++++ v+ll + +k+   + liL+G+a+s+l++alts++++  +++a++s+lfw lG l+ a+w+++ +++  l+ll++++ll 
  CTQ30654.1 117 LGVLTLPVSAFVGGVCSAIAVMLLFHFKKQRGAEHLILCGLAISFLFGALTSYFIFSGDQRAASSVLFWSLGGLGLATWNNLPFAVFSLVLLFAFVLLR 215
                 *************************************************************************************************** PP

       FecCD 197 arkldllalgdetAkslGvnvervrllllllvalltavavalvGpigFvGLivPhiarllvgadhrkllplsallGallllladllarlllsptelpvg 295
                  r ld +  g++tA slG+nv r+r+ ++l++al+t+++val+G+igFvGL+vPh++r ++g +h  llpl++++Ga+ll+  d+++r++l+p+elp+g
  CTQ30654.1 216 WRSLDGVLAGEQTALSLGINVSRLRIEIFLCCALATSLMVALTGVIGFVGLMVPHLCRHFAGVKHLLLLPLCGVWGAILLCGGDIVSRTILAPQELPIG 314
                 *************************************************************************************************** PP

       FecCD 296 ivtaliGapffiylllr 312
                 i+ta iG++f i+ll+r
  CTQ30654.1 315 IITAGIGGLFIIMLLAR 331
                 **************986 PP

>> DUF1294  Protein of unknown function (DUF1294)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       2.2   1.3e+04      30      36 ..      67      73 ..      60      82 .. 0.44
   2 ?   13.0   0.1   1.5e-05     0.091      26      52 ..     121     147 ..     112     149 .. 0.88
   3 ?   -2.9   0.2       1.4   8.6e+03      32      41 ..     256     265 ..     252     274 .. 0.47
   4 ?   -1.4   0.5      0.47   2.8e+03      25      41 ..     279     294 ..     278     296 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.2
     DUF1294 30 lallgGs 36
                l++l G+
  CTQ30654.1 67 LSVLTGA 73
                3333332 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.5e-05
     DUF1294  26 tLlllallgGslGallgmrlfrHKtkk 52 
                 tL + a++gG++ a++ m lf++K ++
  CTQ30654.1 121 TLPVSAFVGGVCSAIAVMLLFHFKKQR 147
                 88899*******************875 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.4
     DUF1294  32 llgGslGall 41 
                 +l G++G + 
  CTQ30654.1 256 ALTGVIGFVG 265
                 4555555432 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.47
     DUF1294  25 ktLlllallgGslGall 41 
                 k Llll l+ G+ Ga+l
  CTQ30654.1 279 KHLLLLPLC-GVWGAIL 294
                 578888887.6666654 PP

>> ABC-3  ABC 3 transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  16.1   1.7e-05       0.1      56     199 ..     122     269 ..      62     331 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.7e-05
       ABC-3  56 lllgailvgliaavalellkrktklke.d..taigivlsvfla.lglvlvslikk.skvdldsyLfGniltisqedliliaiieavvllllllfwkell 149
                 l ++a++ g++ a+a+ ll + +k++  +  ++ g+ +s+ ++ l   ++   ++ +++++  + +G +   + ++l   +   +++++ +ll w++l 
  CTQ30654.1 122 LPVSAFVGGVCSAIAVMLLFHFKKQRGaEhlILCGLAISFLFGaLTSYFIFSGDQrAASSVLFWSLGGLGLATWNNLPFAVFSLVLLFAFVLLRWRSLD 220
                 67899********99998877666554131244577777777423333333333336666666666776666677777777777777888999****** PP

       ABC-3 150 litfdeelAkveglsvkllkllllalialavvvalqavGviLvialliiP 199
                  +   e++A + g++v++l++ +++  ala ++++ + Gvi  + l++ P
  CTQ30654.1 221 GVLAGEQTALSLGINVSRLRIEIFLCCALATSLMVALTGVIGFVGLMV-P 269
                 *****************************************9988876.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2468.38
//
Query:       CTQ30655.1  [L=70]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 547.75
//
Query:       CTQ30656.1  [L=125]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-08   33.2   0.0      6e-08   32.9   0.0    1.1  1  FUR       Ferric uptake regulator family
  ------ inclusion threshold ------
      0.023   14.7   0.0      0.036   14.0   0.0    1.3  1  PadR      Transcriptional regulator PadR-like family


Domain annotation for each model (and alignments):
>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   6.7e-12     6e-08       2      63 ..      37      99 ..      36     110 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 6.7e-12
                TTHCHHHHHHHHHHHHHHHSS.SBEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEE CS
         FUR  2 aglklTkqRekilevleksee.hlsaeevykelkeedpeislaTVYrtLklleeaglvkelef 63
                +++++T+ Re++++   + +e  +sa ++ + +k+ +p+   aTVYr L+ l++ag++ ++e 
  CTQ30656.1 37 KKIRITPLRERVYNFVSHAKEkGISAYQILELMKKYNPNAKPATVYRSLDYLQQAGIIVKIEC 99
                679***************9999************************************99986 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   4.1e-06     0.036       6      49 ..      56      96 ..      52     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.1e-06
                CCS-EEHHHHHHHHHCCSTT-CCTTHHHHHHHHHHHHHTTSEEE CS
        PadR  6 eeqpsyGyeiikeleelsegllelseGslYpaLkrLekeglves 49
                +e+    y+i + ++++  +  +++++++Y+ L+ L++ g++++
  CTQ30656.1 56 KEKGISAYQILELMKKY--N-PNAKPATVYRSLDYLQQAGIIVK 96
                66667789999999999..5.579*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 984.99
//
Query:       CTQ30657.1  [L=133]
Description: Phosphoribosyl-AMP cyclohydrolase 2 [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-35  118.8   1.1    9.4e-35  118.3   1.1    1.2  1  PRA-CH    Phosphoribosyl-AMP cyclohydrolase


Domain annotation for each model (and alignments):
>> PRA-CH  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   1.1   5.2e-39   9.4e-35       1      74 []      45     118 ..      45     118 .. 0.99

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 5.2e-39
                 EEEEE-HHHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-SSTTSBSSS-- CS
      PRA-CH   1 mlaymnkealektletgkavyySrsrkklWkKGetSgnvqkvkeirlDcDqDalllkveqkgaaCHtgkesCFy 74 
                 mla+mn++al++tl tg+a+y+Srsr+ lW+KGetSg vq+v++irlDcD+Da+ll v+qkg aCHtg++sCFy
  CTQ30657.1  45 MLAWMNQQALDETLLTGRACYWSRSRSCLWRKGETSGCVQQVHDIRLDCDGDAVLLLVDQKGGACHTGRRSCFY 118
                 9************************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1140.92
//
Query:       CTQ30658.1  [L=407]
Description: putative regulatory protein (nitrile hydratase activator like) [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-59  200.6   0.3    1.8e-59  200.3   0.3    1.1  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
    4.3e-28   97.1   0.1    1.1e-27   95.8   0.1    1.7  1  CobW_C           Cobalamin synthesis protein cobW C-terminal 
    2.3e-05   24.4   0.1      0.071   13.0   0.0    2.3  2  RsgA_GTPase      RsgA GTPase
     0.0028   16.7   0.1       0.19   10.7   0.0    2.3  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0092   16.4   0.1      0.023   15.1   0.1    1.9  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.011   14.9   0.2      0.022   13.8   0.0    1.6  2  T2SSE            Type II/IV secretion system protein
      0.016   15.1   0.0      0.029   14.3   0.0    1.3  1  ATPase_2         ATPase domain predominantly from Archaea
      0.024   14.6   0.0      0.046   13.7   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.043   13.5   0.0      0.069   12.9   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.092   12.0   0.0       0.16   11.2   0.0    1.3  1  Zeta_toxin       Zeta toxin
      0.099   12.5   0.0       0.18   11.7   0.0    1.4  1  MobB             Molybdopterin guanine dinucleotide synthesis
       0.12   12.6   0.1       0.42   10.9   0.0    1.9  2  AAA_22           AAA domain
       0.12   11.9   0.1         19    4.7   0.0    2.3  2  GTP_EFTU         Elongation factor Tu GTP binding domain
       0.14   12.7   0.1       0.33   11.5   0.1    1.8  1  ABC_tran         ABC transporter
       0.18   11.9   0.1       0.49   10.5   0.0    1.8  2  MMR_HSR1         50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.3   0.3   1.5e-62   1.8e-59       1     176 [.      15     220 ..      15     221 .. 0.95

  Alignments for each domain:
  == domain 1  score: 200.3 bits;  conditional E-value: 1.5e-62
                 EEEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCHCCCCCCHCCCT........EEEETTTTECCHCTT-HHHHHHHHHHHHTT-SEEEEEECT CS
        cobW   1 pvtvltGflGsGKTtLlnhllenraglklavivNefgevsiDaellretgve.......ivelenGciCctlredllkelealeereerldviliEttG 92 
                 pvtvl+GflG+GKTtLlnh+l+nr+g+++avivN+++ev+iDa+l+re g+e       +ve++nGciCctlredll e+++l+++  r+d+++iE+tG
  CTQ30658.1  15 PVTVLSGFLGAGKTTLLNHILNNREGRRVAVIVNDMSEVNIDAALVREGGAElsrtdekLVEMSNGCICCTLREDLLLEVNRLAKEG-RFDQLVIESTG 112
                 79********************************************8877666777777***************************9.9********** PP

                 TTTHHHH..HTT.....SHHHHHCCCECEEEEEEETTTH...................CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHH CS
        cobW  93 laePapv..aft.....eeelksdltldavvavvDaknl..................eaeeekieekaedqlaaadllvlnKtDlldeeallekleerl 166
                 ++eP pv  +ft      e+l++ ++ld++v+vvDa n+                  e +e++  +++ dq++++d+lvlnK+Dl++e+++ ekl ++l
  CTQ30658.1 113 ISEPLPVaeTFTfagddGESLSTVARLDTMVTVVDAYNFlkdygsedsiqsrgeslgEGDERSVVDLLIDQIEFCDVLVLNKVDLISEAQK-EKLMAIL 210
                 *******996667899999**************************************999*****************************87.******* PP

                 HHHHTTS-EE CS
        cobW 167 rqlnpeakvl 176
                 r+lnp+a+++
  CTQ30658.1 211 RSLNPRARIV 220
                 ******9986 PP

>> CobW_C  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.1     9e-31   1.1e-27       1      94 []     266     381 ..     266     381 .. 0.99

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 9e-31
      CobW_C   1 issfvfrarrpfdperleelleeelpegilRaKGivwlagkpd.alvlqgvggrlrlepagawwaa......................ededrrseLVf 76 
                 i+sfvfrarrpf+p+r+++++e+ + +g++R+KG++wla++p+ a +++++gg  r +  g wwa+                        +d r+eLVf
  CTQ30658.1 266 ITSFVFRARRPFHPTRFWQVMEN-ELDGVVRSKGYFWLASRPEfAGSWSQAGGIARQGLGGMWWASvpkgrwpedaeslkfimsnwidGIGDARQELVF 363
                 78*********************.****************************************************************9********** PP

      CobW_C  77 IGrdldkealeeaLdacl 94 
                 IG d+++++l+++Ld++l
  CTQ30658.1 364 IGMDMNESELRNRLDSAL 381
                 ***************986 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   5.9e-05     0.071     101     124 ..      16      39 ..       5      56 .. 0.81
   2 !    9.0   0.0     0.001       1.2      49      79 ..     188     217 ..     173     228 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.9e-05
                  EEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpele 124
                  ++vl G  G+GK+tL+n++l++ e
   CTQ30658.1  16 VTVLSGFLGAGKTTLLNHILNNRE 39 
                  79*****************99754 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.001
                  EEEEEE-GGG--HHHHHHHHHHHHHHTTSEE CS
  RsgA_GTPase  49 pvivlnKiDlleeeeeleelkeelealgyev 79 
                   v+vlnK+Dl++e++  e+l++ l++l+ + 
   CTQ30658.1 188 DVLVLNKVDLISEAQ-KEKLMAILRSLNPRA 217
                  489************.999999999988665 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00016      0.19      34      68 ..      19      51 ..       7      70 .. 0.83
   2 ?    3.6   0.0     0.023        28     166     191 ..     184     208 ..     169     224 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
                EEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE--- CS
        MeaB 34 ltGvPGaGkstlvealglelrrrGkrvavlavDPs 68
                l G+ GaGk tl++++  +  r+G+rvav+  D s
  CTQ30658.1 19 LSGFLGAGKTTLLNHILNN--REGRRVAVIVNDMS 51
                789***********99875..99******987765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.023
                 HHH-SEEEEE---.HHHHHHHHHHHHH CS
        MeaB 166 leiaDiivvnkaD.kkeaekaarelra 191
                 +e  D++v+nk D  +ea+k   +l+a
  CTQ30658.1 184 IEFCDVLVLNKVDlISEAQKE--KLMA 208
                 799**********64555543..3333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.9e-05     0.023      23      59 ..      13      49 ..       3     222 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.9e-05
      AAA_16 23 rpelvllsGesGvGKsslvrellralekdggiflrgk 59
                r ++++lsG  G GK++l++++l+  e++++ ++  +
  CTQ30658.1 13 RLPVTVLSGFLGAGKTTLLNHILNNREGRRVAVIVND 49
                44899******************99999876664433 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.8e-05     0.022     133     174 ..      18      58 ..      12      76 .. 0.89
   2 ?   -3.0   0.1       2.5     3e+03      38     130 ..     197     217 ..     172     223 .. 0.46

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
       T2SSE 133 lvsGgTgsGKttllyallkeinksderivtvEDpvEiqlega 174
                 ++sG  g GKttll+ +l+  + + +  v+v D  E+++++a
  CTQ30658.1  18 VLSGFLGAGKTTLLNHILNNREGR-RVAVIVNDMSEVNIDAA 58 
                 789****************99888.88899*******99875 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.5
       T2SSE  38 eveelekaalerlisriaalakldiseerplqdarlpekgvrlrvvllPvvagealviRkksakeltlddlgaeealkekiaevlrkavrerg 130
                  ++e +k++l                                                                        ++lr+  + r 
  CTQ30658.1 197 LISEAQKEKL-----------------------------------------------------------------------MAILRSL-NPRA 217
                 3444444444.......................................................................4444443.4444 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.4e-05     0.029      22      65 ..      16      58 ..       8     107 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.4e-05
    ATPase_2 22 iyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskl 65
                + ++ G  g GKt+Ll++i++n+e      + +++++e++i+ +
  CTQ30658.1 16 VTVLSGFLGAGKTTLLNHILNNREGRRV-AVIVNDMSEVNIDAA 58
                6788899****************88665.666888888888765 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.9e-05     0.046      21      43 ..      16      38 ..       2      45 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.9e-05
                EEEEEESTTSSHHHHHHHHHHHT CS
        TsaE 21 vilLeGdLGaGKTtlvrglakal 43
                v +L+G LGaGKTtl  +++++ 
  CTQ30658.1 16 VTVLSGFLGAGKTTLLNHILNNR 38
                589**************999865 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.8e-05     0.069       2      37 ..      18      49 ..      17      76 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.8e-05
  Viral_helicase1  2 vvhGvpGcGKStlirkllrtsliltvnrptaellte 37
                     v +G+ G+GK+tl+ ++l++    +++r+ a+++++
       CTQ30658.1 18 VLSGFLGAGKTTLLNHILNN----REGRRVAVIVND 49
                     889*****************....555555555554 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.16      18      52 ..      16      49 ..       3      54 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
  Zeta_toxin 18 lillgGqpGAGKselaellkdelerqgnvvrldpD 52
                + +l+G  GAGK++l++ + ++  ++++v ++  D
  CTQ30658.1 16 VTVLSGFLGAGKTTLLNHILNNR-EGRRVAVIVND 49
                6789*****************97.57777777666 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015      0.18       4      44 ..      19      57 ..      16      66 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
        MobB  4 ivgksgsGKTtLleklipelkarglrvgtiKhahhgfdvdk 44
                + g+ g+GKTtLl+++++  +++g rv++i  +  ++++d 
  CTQ30658.1 19 LSGFLGAGKTTLLNHILN--NREGRRVAVIVNDMSEVNIDA 57
                67999***********98..58899*****99999999885 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00035      0.42       7      31 ..      16      40 ..      12      95 .. 0.82
   2 ?   -1.7   0.0       2.7   3.3e+03      76     114 ..     174     212 ..     151     229 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00035
      AAA_22  7 ilvvtGesGtGKTtllrrlleqlde 31
                ++v+ G  G+GKTtll+ +l++ + 
  CTQ30658.1 16 VTVLSGFLGAGKTTLLNHILNNREG 40
                6899****************99853 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.7
      AAA_22  76 eellealeqalraravielliiDEaqhlrs....eealeeLrs 114
                 + ++++l ++++ ++v   l++  ++ + s    e+++  Lrs
  CTQ30658.1 174 RSVVDLLIDQIEFCDV---LVLNKVDLI-SeaqkEKLMAILRS 212
                 4555555555555544...777777777.42222333333333 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.016        19      10      28 ..      21      39 ..      12      63 .. 0.79
   2 ?    4.2   0.1     0.023        27     119     150 ..     182     213 ..     130     237 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.016
                ESTTSSHHHHHHHHHHHTT CS
    GTP_EFTU 10 ghvDhGKtTLtdrLlyktg 28
                g + +GKtTL+ ++l + +
  CTQ30658.1 21 GFLGAGKTTLLNHILNNRE 39
                66789*********97655 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.023
                 HHTTTEEEEEEESCGSTHHHHHHHHHHHHHHH CS
    GTP_EFTU 119 lkegvpiivfiNKmDrlkaelkeiveevkqkl 150
                  + +   ++++NK+D + +  ke   ++ ++l
  CTQ30658.1 182 DQIEFCDVLVLNKVDLISEAQKEKLMAILRSL 213
                 444455799********666666555555554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00028      0.33      14      43 ..      17      46 ..      12     221 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00028
                EEEEESTTSSHHHHHHHHTTSS--SEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpteGeil 43
                +++ G  GaGK+tLl+ ++++ +     + 
  CTQ30658.1 17 TVLSGFLGAGKTTLLNHILNNREGRRVAVI 46
                6788999***********998876555554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00041      0.49       3      29 ..      18      50 ..      16      74 .. 0.75
   2 ?   -2.1   0.0       3.2   3.9e+03      73      87 ..     136     153 ..     119     210 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00041
                EEEESTTSSHHHHHHHHHTS......TEEESSS CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge......kaivsdk 29
                ++ G   +GK+tL+n ++++      ++iv+d+
  CTQ30658.1 18 VLSGFLGAGKTTLLNHILNNregrrvAVIVNDM 50
                5779999***********953333223455555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.2
                 HHCTSEEEEEEETT...T CS
    MMR_HSR1  73 leeadlillvvdas...e 87 
                 + + d ++ vvda    +
  CTQ30658.1 136 VARLDTMVTVVDAYnflK 153
                 455666777777544431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3127.02
//
Query:       CTQ30659.1  [L=549]
Description: putative ferrous ion transport protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-13   48.4   0.0    1.1e-12   47.7   0.0    1.3  1  FeoB_N       Ferrous iron transport protein B
    6.9e-12   45.6   7.7    3.2e-05   24.2   2.5    2.9  3  Gate         Nucleoside recognition
    8.1e-12   45.2   0.0    1.5e-11   44.4   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
    1.9e-07   31.3   0.2    3.2e-05   24.1   0.0    2.2  2  Dynamin_N    Dynamin family
     0.0043   17.0   0.0       0.02   14.8   0.0    2.0  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.045   13.2   0.0      0.068   12.6   0.0    1.3  1  SRPRB        Signal recognition particle receptor beta subuni


Domain annotation for each model (and alignments):
>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   3.8e-16   1.1e-12       3     146 ..       4     143 ..       2     152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 3.8e-16
                 EEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGGHHHHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatnlernLyLtlq 100
                 ++l+G   +Gk+tlfn lt++  ++  N+ G tv  +eg ++  +  + +vD PGi  +++ se  k+a d l   + d ++ v+ at+ +++ + ++ 
  CTQ30659.1   4 FVLMGLESAGKSTLFNILTESAaSDERNFRGSTVVCREGLIN--DAGICLVDTPGI-RFQSDSETTKLALDALN--QHDGILVVLRATHAQQEWQTLCH 97 
                 6899***************98636789**************9..999********9.68999999******995..789****************9999 PP

                 HHHTT.SSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTT CS
      FeoB_N 101 llelg.vpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkk 146
                 l+  + ++vv+ l   d+++k  +e+ ++ Lse+ g pv++++a++ 
  CTQ30659.1  98 LIPPQaKHVVILLTFADKIRKGLLEV-TEYLSETSGAPVLAVNAREA 143
                 99887366778889999999888887.679*************9874 PP

>> Gate  Nucleoside recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.6   4.7e+03      77      98 ..     188     209 ..     170     213 .. 0.76
   2 !   23.4   0.1   1.9e-08   5.7e-05       3     110 ..     262     354 ..     260     356 .. 0.91
   3 !   24.2   2.5   1.1e-08   3.2e-05       2     111 ..     419     520 ..     418     521 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.6
        Gate  77 qgfdtpksalafllfvllytpc 98 
                 ++ +  k a +++lf+l+++p 
  CTQ30659.1 188 EHRWCGKVAAIVCLFLLFAVPV 209
                 5666777788899999999885 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 1.9e-08
        Gate   3 kagpiillasiliwflssssllgrigkllepvfaplgqeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpksalafllfvllytpcvat 101
                  a+p+++l+ + +++  +s+l +ri   l+p +++lg  l+++  ++ l+gf+   ++v ++ +           +  ++ ++ a++ ++++ + c ++
  CTQ30659.1 262 WAFPVVVLIGLSLSLTDDSGLKERITATLDPWLRKLG--LSGQDLIPVLSGFG---CNVVAVFQS----------RSCSRCTRHACISMISFGSACSYQ 345
                 699**********************************..**************...999888666..........78888889999999999999**** PP

        Gate 102 lavivrelg 110
                 +++  + ++
  CTQ30659.1 346 TGATLSLFN 354
                 999988776 PP

  == domain 3  score: 24.2 bits;  conditional E-value: 1.1e-08
        Gate   2 lkagpiillasiliwflssssllgrigkllepvfaplgqeldwkatvslltgfaakevvvgtlgtlytsalgellqgfdtpksalafllfvllytpcva 100
                  +a+p++l+++i+ ++l + ++  +++   +p+++ ++  l+ +++ +++++++        l++l  ++ g+l+q+  t +  l + l ++l+  c+ 
  CTQ30659.1 419 TQAMPLFLIICIVAGMLDYAGITRWLSETTAPLLHLFK--LPAELMPGIIFSLL----RKDGLMVL-NQDGGSLIQSLSTSQLLLLVWLASTLMA-CLV 509
                 5899********************************99..**************....44444444.3445666777777777666666666665.*** PP

        Gate 101 tlavivrelgs 111
                 t+ +i+re+++
  CTQ30659.1 510 TVFTIAREINW 520
                 ********986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   5.1e-15   1.5e-11       3     101 ..       5      99 ..       3     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 5.1e-15
                 EEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeeleel 100
                 +++G   +GKStL+n lt++ ++   ++ g T   +eg ++  +  i lvDtpG i  +s+++  + a+ al++ d il+v++a+ +  +++ ++l  l
  CTQ30659.1   5 VLMGLESAGKSTLFNILTESaASDERNFRGSTVVCREGLIN--DAGICLVDTPG-IRFQSDSETTKLALDALNQHDGILVVLRAT-H-AQQEWQTLCHL 98 
                 799****************966799**************99..788********.76455666677777777889*******977.3.45555555555 PP

                 H CS
    MMR_HSR1 101 l 101
                 +
  CTQ30659.1  99 I 99 
                 4 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.1    0.0066        20       2      21 ..       5      24 ..       4      38 .. 0.87
   2 !   24.1   0.0   1.1e-08   3.2e-05      99     166 ..      45     111 ..      33     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0066
                EEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N  2 avvGsqSsGKSSvlnaLlge 21
                +++G  S+GKS++ n L+++
  CTQ30659.1  5 VLMGLESAGKSTLFNILTES 24
                578999*********99876 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 1.1e-08
                 TS-SEEEEE---B-SSSGTTS.HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE CS
   Dynamin_N  99 lvkgltlvDlPGldsvnkrdq.elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvlt 166
                 ++ g+ lvD+PG+  + + ++ +l+  +++++d il+v+ a h  +++e + l +++ p+ k ++++lt
  CTQ30659.1  45 NDAGICLVDTPGIRFQSDSETtKLALDALNQHDGILVVLRATH--AQQEWQTLCHLIPPQAKHVVILLT 111
                 67899********986666555*********************..6779******99999999888887 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.7e-06      0.02     101     162 ..       3      58 ..       1      61 [. 0.80
   2 ?   -1.1   0.0      0.51   1.5e+03      46      86 ..     103     142 ..      74     154 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.7e-06
                  EEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-SSS CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPGfr 162
                    vl+G   +GKStL n l++++     +  e++ rG     +  l++ a g +l+DtPG+r
   CTQ30659.1   3 SFVLMGLESAGKSTLFNILTESA-----ASDERNFRGSTVVCREGLINDA-GICLVDTPGIR 58 
                  679****************9993.....4456667787666666677666.*********97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.51
                  T-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTT CS
  RsgA_GTPase  46 giepvivlnKiDlleeeeeleelkeelealgyevllvsakt 86 
                    ++vi+l+ +D + +   le ++   e+ g +vl+v+a++
   CTQ30659.1 103 AKHVVILLTFADKIRKGL-LEVTEYLSETSGAPVLAVNARE 142
                  447899999999999999.8888888888899999998874 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.3e-05     0.068       5      59 ..       3      57 ..       1      99 [. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
                EEEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG...GGTT-SEEEETT- CS
       SRPRB  5 avllvGlsdsGKTslftrLttdsvkktvtSqessaalkvksekgskltliDfPGh 59
                +++l+Gl  +GK +lf+ Lt+ ++ +      s+++ +    ++  + l+D PG 
  CTQ30659.1  3 SFVLMGLESAGKSTLFNILTESAASDERNFRGSTVVCREGLINDAGICLVDTPGI 57
                799******************9998888888777777777789999999999994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 4413.72
//
Query:       CTQ30660.1  [L=376]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-92  309.6   0.0    2.5e-92  309.4   0.0    1.0  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    3.2e-10   39.7   0.0    8.4e-10   38.3   0.0    1.6  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    6.9e-06   26.1   0.1      0.035   14.1   0.2    3.0  2  NAD_binding_9   FAD-NAD(P)-binding
    3.2e-05   23.2   0.0      0.014   14.6   0.0    2.5  3  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    8.3e-05   21.5   0.1       0.15   10.8   0.5    2.6  4  HI0933_like     HI0933-like protein
     0.0013   18.0   0.4     0.0021   17.4   0.4    1.2  1  FAD_binding_3   FAD binding domain
      0.002   18.3   0.1     0.0057   16.8   0.1    1.8  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
     0.0036   17.8   0.5        1.1    9.9   0.5    2.3  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0039   16.3   0.0      0.092   11.8   0.1    2.6  3  Lycopene_cycl   Lycopene cyclase protein
     0.0054   15.7   0.0      0.008   15.2   0.0    1.1  1  Etmic-2         Microneme protein Etmic-2
  ------ inclusion threshold ------
      0.011   15.4   0.1      0.029   14.0   0.1    1.7  1  DAO             FAD dependent oxidoreductase
      0.041   12.7   0.4      0.064   12.1   0.4    1.2  1  Trp_halogenase  Tryptophan halogenase
       0.05   12.7   0.2        3.2    6.7   0.4    2.8  3  GIDA            Glucose inhibited division protein A
      0.091   12.3   0.0       0.14   11.7   0.0    1.3  1  DUF4147         Domain of unknown function (DUF4147)
       0.13   12.6   0.0       0.25   11.6   0.0    1.4  1  TrkA_N          TrkA-N domain
       0.24   10.6   0.7       0.81    8.9   0.1    1.9  2  Thi4            Thi4 family


Domain annotation for each model (and alignments):
>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.4   0.0   2.2e-95   2.5e-92       1     305 []       8     318 ..       8     318 .. 0.95

  Alignments for each domain:
  == domain 1  score: 309.4 bits;  conditional E-value: 2.2e-95
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgnignsiyrypkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelpi 98 
                  +I+GaGPaG+++a  l+++ ++d+l+++ +++g+s++r+p+e++fi+psf s+ ++ pdln++++++s a+++ ee++ +k++++Yl+ v +++++p+
   CTQ30660.1   8 VIVGAGPAGVGMAALLRRSAIQDILVVDSHEVGASFMRWPEETRFITPSFFSNPFGQPDLNSVTPDSSLALFCGEEHPGGKTYASYLKVVLDEYQIPV 105
                  7************************************************************************************************* PP

  Pyr_redox_3  99 klfeeVesvkk.edegfevetske.tyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtvvt 194
                  ++  ++ +v+  ++++f+++t+ + ++e++++i+AtGef++P+++ +pG++  ++hy  v++++++++ +++ViGg++SavDaA++l ++g++V+++t
   CTQ30660.1 106 MAPARIAKVALlSSGNFILTTEAGeKLETRSLIWATGEFQFPDRQIFPGAD-ICCHYGDVTSWKDFRKGEYIVIGGYESAVDAAVNLLENGSSVKMLT 202
                  ***********67788******9769************************9.********************************************** PP

  Pyr_redox_3 195 rgseiekee.sdpsyslkpdienrleelvkeekikvlfnaevkeik...ekeeeykvktedgkkvevkddvvlatGykpd..lsflkkslfeldedgr 286
                  r++++++++ sdps sl+p++++rl+++++++ ++++++a+v e+     + ++ykv+t++g+ + +++ +vlatG+++   +++l+ + fe+++dg+
   CTQ30660.1 203 RSAPWSTNHiSDPSLSLSPYTRERLNRVMNHRLFEIYEDADVCEVIrmpGPGSSYKVHTTNGRAWATDEVPVLATGFQCGggARQLA-AFFEWNDDGY 299
                  *******998*********************7788888877766551115679*************************983356666.9********* PP

  Pyr_redox_3 287 pvlteeteetnvpglflaG 305
                  pvlt+e+++t +pgl+l+G
   CTQ30660.1 300 PVLTDEDCSTLFPGLYLVG 318
                  *****************99 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   7.5e-13   8.4e-10       2     275 ..       6     318 ..       5     327 .. 0.74

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 7.5e-13
                  SEEEE--SHHHHHHHHHHHH.HTS-EEEEE................TTHCHHHCSHHHHCHHHHHHHHHHHHH......................... CS
                  xxxxxxxxxxxxxxxxxxxx.xxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxx......................... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq.agakvtlve................legtclnggcllskallgvaedaeias......................... 57 
                  +vv++G+GpAG+ +a  l++ a  ++++v+                                   +                                
   CTQ30660.1   6 EVVIVGAGPAGVGMAALLRRsAIQDILVVDshevgasfmrwpeetrF---------------ITPSF-----Fsnpfgqpdlnsvtpdsslalfcgee 83 
                  69******************557788888654433433333211111...............11111.....11122234444566667777799999 PP

                  ............HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEECTCEEEEEESEEEE---.E.EE-BCTCTTC.TTBEECCSECHHHHHHCCSS- CS
                  ............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 ............evvkklnqgielllgeevvkidpgkkkvklekkkegdeekiaydklvlAtG.s.sprdlgipGvaenvgklvrtldsaealklkll 141
                               v+++++  ++  ++  +v++   ++++ l++   + +ek++  +l+ AtG +  p +   pG+ + +++    ++s + +++ + 
   CTQ30660.1  84 hpggktyasylkVVLDEYQIPVMAPARIAKVAL-LSSGNFILTT---EAGEKLETRSLIWATGeFqFPDRQIFPGA-DICCHY-GDVTSWKDFRKGEY 175
                  988877877776455556655666666666666.5556888844...6789************53466666899**.888888.67777777776665 PP

                  TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS........TTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE...EEEEEETTSCEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx RF
  Pyr_redox_2 142 pkrivvvGgGyiGvElAaalaklgkevtlveardrll........raldkelsaaleealekeGvevklgtsvkeidgnge...klevvledgeeida 228
                      +v+Gg   +v+ A  l + g+ v ++ +              +l +  +++l+++++++  e++  + v e+++ +    +++v++++g+  ++
   CTQ30660.1 176 ----IVIGGYESAVDAAVNLLENGSSVKMLTRSAPWStnhisdpsLSLSPYTRERLNRVMNHRLFEIYEDADVCEVIRMPGpgsSYKVHTTNGRAWAT 269
                  ....7********************99977765332223222422345588899999999999999**************9*99999*********** PP

                  SEE.EE-S-EEES-HHCSHCCT-EEEETTEE.E--TTSBESSTTEEE-G CS
                  xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 229 dlv.vvavGvrpstelleeklglelderggi.vvdeflrtnvpgiyaiG 275
                  d v v+a+G++     ++ ++  e++++g+  ++de + t  pg+y++G
   CTQ30660.1 270 DEVpVLATGFQCGGGARQLAAFFEWNDDGYPvLTDEDCSTLFPGLYLVG 318
                  9997999****998776688999******98789**************9 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   3.2e-05     0.035       1      39 [.       8      42 ..       8     144 .. 0.85
   2 !    8.6   0.0    0.0015       1.7     123     155 ..     246     279 ..     215     280 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.2e-05
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdpsepgag 39
                   +ivGaGp+G+ +++ L ++    +  +i ++d +e ga 
     CTQ30660.1  8 VIVGAGPAGVGMAALLRRS----AIQDILVVDSHEVGAS 42
                   7**********99765555....699*********9943 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0015
  NAD_binding_9 123 evvdleeradgqavlladgaslaadaV.vLAlGh 155
                    ev+++   +++++v++++g+ +a d+V vLA+G 
     CTQ30660.1 246 EVIRMPGPGSSYKVHTTNGRAWATDEVpVLATGF 279
                    666677777889********************96 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0055       6.2       4      35 ..       6      36 ..       3      48 .. 0.84
   2 !   14.6   0.0   1.2e-05     0.014      91     226 ..      83     205 ..      74     233 .. 0.82
   3 ?   -1.4   0.0      0.87   9.7e+02     281     341 ..     222     280 ..     207     281 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0055
  K_oxygenase  4 DligiGiGpsnLsLailleevkkelkalfler 35
                 +++++G+Gp+ +++a+ll+  +   ++l+++ 
   CTQ30660.1  6 EVVIVGAGPAGVGMAALLRRSA-IQDILVVDS 36
                 799***************9998.677777775 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.2e-05
  K_oxygenase  91 flpsRkefedYlrWvasqleeqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeel 188
                  ++p  k +++Yl+ v ++ +  v   +++ +v   ++  +++lt e        e+le+r+l+ ++G   + P+    + g + ++H  ++++ k  +
   CTQ30660.1  83 EHPGGKTYASYLKVVLDEYQIPVMAPARIAKVALLSSG-NFILTTE------AGEKLETRSLIWATGE-FQFPDRQI-FPGADICCHYGDVTSWK--D 169
                  66777889999999999999999999999999999975.3444444......4789**********96.57898754.66789***********9..6 PP

  K_oxygenase 189 lakkriaVvGsGqSaaeifedllrrqkkvelklvtrse 226
                   +k + +V+G+  Sa + + +ll++ +  ++k++trs+
   CTQ30660.1 170 FRKGEYIVIGGYESAVDAAVNLLENGS--SVKMLTRSA 205
                  8888899*****************988..788888876 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.87
  K_oxygenase 281 yeelyeqkvkgeerlrllpnrevesaeaegkg..eveltlrneesgeeetlevdavvlATGYr 341
                  y + + ++v +++ ++++++ +v+++ + +    +++++++n     +   + ++ vlATG++
   CTQ30660.1 222 YTRERLNRVMNHRLFEIYEDADVCEVIRMPGPgsSYKVHTTN----GRAWATDEVPVLATGFQ 280
                  566666667666677777888888777776431144444444....44444455669999986 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.5   0.00013      0.15       2      32 ..       6      37 ..       5      44 .. 0.86
   2 !    7.4   0.0    0.0013       1.5     113     168 ..      92     147 ..      73     149 .. 0.87
   3 ?   -3.4   0.0       2.6   2.9e+03       3      29 ..     175     201 ..     174     204 .. 0.86
   4 ?   -3.8   0.0       3.5   3.9e+03     124     163 ..     236     278 ..     226     279 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                 SEEEE--SHHHH.HHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGl.maAisaakrgkrVllleka 32
                 +v+++G+G+AG+ maA+  +++ +++l++++ 
   CTQ30660.1  6 EVVIVGAGPAGVgMAALLRRSAIQDILVVDSH 37
                 79*********988888889999999999976 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0013
                  HHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE.TTEEEEESEEEE----SS-G CS
  HI0933_like 113 dallkelkeagvklrletevksvekeedgkfrvktkseeeleadklvlAtGGlSiP 168
                  + l+  l+e ++ ++   ++++v+  ++g+f ++t+ +e+le+++l+ AtG   +P
   CTQ30660.1  92 SYLKVVLDEYQIPVMAPARIAKVALLSSGNFILTTEAGEKLETRSLIWATGEFQFP 147
                  5677789999*****************************************76665 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.6
                  EEEE--SHHHHHHHHHHHHTT--EEEE CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVlll 29 
                   iviGg  + + aA+++ ++g++V +l
   CTQ30660.1 175 YIVIGGYESAVDAAVNLLENGSSVKML 201
                  589999999999999999999999876 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 3.5
                  -EEE-S--EEEEECE..TTE.EEEEE.TTEEEEESEE.EE--- CS
  HI0933_like 124 vklrletevksveke..edgkfrvktkseeeleadkl.vlAtG 163
                   +++ + +v +v +    +++++v+t++++++++d++ vlAtG
   CTQ30660.1 236 FEIYEDADVCEVIRMpgPGSSYKVHTTNGRAWATDEVpVLATG 278
                  5555666666664431135668888888888888877678877 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.4   1.9e-06    0.0021       3      34 ..       6      38 ..       5      45 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.9e-06
                   EEEEE--SHHHHHHHHHHHHTTHH.EEEEESSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvr.vvlvekrs 34
                   +V+IVGaGpaG+  a lL++  ++  ++v+ ++
     CTQ30660.1  6 EVVIVGAGPAGVGMAALLRRSAIQdILVVDSHE 38
                   79*******************9*9566777776 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   5.1e-06    0.0057       1      29 [.       9      38 ..       9      46 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.1e-06
                   EE--SHHHHHHHHHHHCCTE.EEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagf.dvlllekrd 29
                   IvGaG +G  +A+lL++  + d+l++++++
     CTQ30660.1  9 IVGAGPAGVGMAALLRRSAIqDILVVDSHE 38
                   9****************96659*****985 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.5   0.00099       1.1       2      34 ..       7      39 ..       6      44 .. 0.82
   2 ?    5.7   0.0     0.019        22       3      31 ..     176     204 ..     174     214 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00099
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkl 34
                vv+vG+G  g+ +A+ l++ + +  +v+ s ++
  CTQ30660.1  7 VVIVGAGPAGVGMAALLRRSAIQDILVVDSHEV 39
                9*****************998776666666655 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.019
                 EEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox   3 vvvGgGyiglElAgalaelgkkVtvvers 31 
                 +v+Gg  +++++A +l e g++V+++ rs
  CTQ30660.1 176 IVIGGYESAVDAAVNLLENGSSVKMLTRS 204
                 79**********************99987 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   8.2e-05     0.092       2      30 ..       7      33 ..       6      54 .. 0.72
   2 ?    0.2   0.0      0.26     3e+02     107     143 ..     109     145 ..     100     159 .. 0.86
   3 ?   -0.4   0.0      0.41   4.6e+02      85     128 ..     223     265 ..     213     288 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.2e-05
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvli 30
                   vv++GaGpAg+ +Aa l   + +++ +l+
     CTQ30660.1  7 VVIVGAGPAGVGMAALL--RRSAIQDILV 33
                   9**************99..5555554444 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.26
  Lycopene_cycl 107 akvesveeeeageslvvleggrkirarlvvdarglas 143
                    a++++v+  + g+   ++e+g+k++ r  + a+g ++
     CTQ30660.1 109 ARIAKVALLSSGNFILTTEAGEKLETRSLIWATGEFQ 145
                    88999999999999*******************9665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.41
  Lycopene_cycl  85 sskrlkeellerlvengvklleakvesveeeea.gesl.vvleggr 128
                    +++rl++++++rl     ++ +a v +v   +  g s+ v + +gr
     CTQ30660.1 223 TRERLNRVMNHRLF---EIYEDADVCEVIRMPGpGSSYkVHTTNGR 265
                    6999*********9...79999999999888876544314455555 PP

>> Etmic-2  Microneme protein Etmic-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.1e-06     0.008     210     290 ..     123     200 ..     104     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.1e-06
     Etmic-2 210 litqqnpkevevrvlawisteylcsrrgvsrifkysdfcslcrdattgkgswkensvvvgsslsgrdltvnlsdcgpsslr 290
                 ++t +   ++e r l w + e+    r   +if  +d+c+   d t+ k   k + +v+g   s  d +vnl + g s   
  CTQ30660.1 123 ILTTEAGEKLETRSLIWATGEFQFPDR---QIFPGADICCHYGDVTSWKDFRKGEYIVIGGYESAVDAAVNLLENGSSVKM 200
                 4566777889**********9988877...69******************************************9987654 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   2.6e-05     0.029       2      33 ..       7      40 ..       6      48 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.6e-05
                EEEECTSHHHHHHHHHHHHTT....EEEEESSSSTT CS
         DAO  2 vviiGGGiiGlstAyeLarrg....Vtllekgdiag 33
                vvi+G+G +G++ A  L rr     +++++++ ++g
  CTQ30660.1  7 VVIVGAGPAGVGMAALL-RRSaiqdILVVDSH-EVG 40
                9****************.7655889******9.766 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   5.7e-05     0.064       1      37 [.       6      40 ..       6      43 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.7e-05
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-SSS- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlveseeig 37
                    ++vivG+G+aG   Aa+l++      ++++v+s e+g
      CTQ30660.1  6 EVVIVGAGPAGVGMAALLRRSAI--QDILVVDSHEVG 40
                    59**********99999999884..59*******998 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.4    0.0029       3.2       2      29 ..       7      34 ..       6      45 .. 0.85
   2 ?   -0.7   0.0      0.51   5.7e+02     131     151 ..     124     144 ..      89     154 .. 0.81
   3 ?    2.3   0.0     0.062        70       3      31 ..     176     204 ..     174     278 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0029
                EEEE-SSHHHHHHHHHHHHTT--EEEEE CS
        GIDA  2 viViGgGhAGceAAlaaarlGakvlLit 29
                v+++G+G AG+  A+ + r+ ++ +L++
  CTQ30660.1  7 VVIVGAGPAGVGMAALLRRSAIQDILVV 34
                9**************9999999888874 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.51
                 EEETTS-EEEECEEEE--TT- CS
        GIDA 131 vvtedgetikakavviatGtf 151
                 ++te ge++++++ + atG f
  CTQ30660.1 124 LTTEAGEKLETRSLIWATGEF 144
                 578999999999999999987 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.062
                 EEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLithk 31 
                 iViGg  + + AA+++ + G +v+++t +
  CTQ30660.1 176 IVIGGYESAVDAAVNLLENGSSVKMLTRS 204
                 8************************9765 PP

>> DUF4147  Domain of unknown function (DUF4147)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012      0.14      34      70 ..       3      39 ..       1      79 [. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
                ..-SEEEEEESTTHHHHHHHHH.HHHGEEEEEEETT- CS
     DUF4147 34 kkkrvvvvgaGKAaaamaaaleeealksgvvvvkkgh 70
                + ++vv+vgaG A ++maa l+++a+++ +vv  ++ 
  CTQ30660.1  3 QPREVVIVGAGPAGVGMAALLRRSAIQDILVVDSHEV 39
                6689******************776777666655443 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00022      0.25       1      31 [.       7      38 ..       7      50 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00022
                EEEES-SHHHHHHHHHHHHTT.EEEEEEESSH CS
      TrkA_N  1 iiiiGlGrvGrslaeeLsegg.kdvvvidkde 31
                ++i+G+G  G  +a  L+++  +d++v+d+ e
  CTQ30660.1  7 VVIVGAGPAGVGMAALLRRSAiQDILVVDSHE 38
                79*****************55589*****976 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00072      0.81      19      47 ..       6      34 ..       3      42 .. 0.79
   2 ?   -0.8   0.0      0.65   7.3e+02      10      43 ..     165     199 ..     161     205 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00072
                EEEEE--SHHHHHHHHHHHHCTTS-EEEE CS
        Thi4 19 DvvivGaGssGLtaayylakkpdlkvail 47
                +vvivGaG++G+  a  l ++    ++++
  CTQ30660.1  6 EVVIVGAGPAGVGMAALLRRSAIQDILVV 34
                79*************99988844445555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.65
                 HHHHHHTEEEEEEE--SHHHHHHHHHHHHC.TTS- CS
        Thi4  10 edllkyaesDvvivGaGssGLtaayylakk.pdlk 43 
                 + + ++ + + +++G+  s + aa  l ++   +k
  CTQ30660.1 165 TSWKDFRKGEYIVIGGYESAVDAAVNLLENgSSVK 199
                 67999999999*************99998834444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2726.17
//
Query:       CTQ30661.1  [L=460]
Description: cysteinyl-tRNA synthetase [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.2e-134  446.6   0.0   5.3e-134  446.3   0.0    1.1  1  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
    3.5e-23   81.8   0.9    7.2e-23   80.8   0.9    1.6  1  DALR_2        DALR domain
    4.2e-15   55.4   0.2    2.7e-07   29.7   0.0    2.1  2  tRNA-synt_1g  tRNA synthetases class I (M)
    6.4e-08   31.3   0.0    3.2e-05   22.4   0.0    2.1  2  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
    3.1e-05   23.1   0.0      0.018   14.0   0.0    2.3  2  tRNA-synt_1f  tRNA synthetases class I (K)


Domain annotation for each model (and alignments):
>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.3   0.0  1.5e-137  5.3e-134       3     299 ..      16     312 ..      14     314 .. 0.99

  Alignments for each domain:
  == domain 1  score: 446.3 bits;  conditional E-value: 1.5e-137
                   --SBTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SB-- CS
  tRNA-synt_1e   3 kpleekkvtlYvCGptvydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvkelaekfieefkkdleaLnvlkptlep 99 
                   +p++e k+ +YvCG+tvyd +hlGhaR++vafD++ r+l+ +gYdv+fv+n+tDidDkii+rar+ ++ +++l+e++++e++ d+++L++l+p++ep
    CTQ30661.1  16 VPVKESKIGMYVCGVTVYDLCHLGHARTFVAFDMIVRYLRFRGYDVTFVRNITDIDDKIIQRARDTGEDWRSLTERMVHEMHIDFAKLGILPPNIEP 112
                   578999******************************************************************************************* PP

                   BGGGGHHHHHHHHHHHHHTTSEEE-TTS-EEE-GGG-TTTTTTTT--HHHHHHT----S--S-SSTT-EEEEEE--TTS--B--TTSSEEE-SSHHH CS
  tRNA-synt_1e 100 rvsekvdeiielvekliekgyaYavsdgdvyfdvskkeeYgklskqnleelelgaegevseekkdkkDfaLWkaskegepswdsPwgkGRPGWhieC 196
                   r +e++++ii ++e+l+++ +aY +++gdv+f++ + + Ygkls q++  l++g ++ev+e k+d+ Df+LWk +k+gep w+sPwg+GRPGWhieC
    CTQ30661.1 113 RPTEHIPQIISMIERLLHRQFAYIAENGDVMFSTASAKGYGKLSGQDITMLRAGTRIEVNEYKRDPLDFVLWKRAKPGEPVWPSPWGEGRPGWHIEC 209
                   ************************************************************************************************* PP

                   HHHHHHHH-SSEEEEEEEGGGTTTHHHHHHHHHHHHSSS--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS-TTS-EEE-H CS
  tRNA-synt_1e 197 svmaskllgseidihsGGiDLafPhhenelaqseaafdkqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRllllsahyrsqldfke 293
                   s+m++++lg+++dih+GG+DL+fPhhene+aqs++a d ++v+y+lh+g++++++ekmsksL+nf+t++d+l++fd++ +R++llsahyr++l+++e
    CTQ30661.1 210 SAMNCHYLGTHFDIHGGGSDLIFPHHENEIAQSTSANDGPYVNYWLHTGMVTVNKEKMSKSLNNFFTLRDILNRFDAQSVRFFLLSAHYRKPLNYSE 306
                   ************************************************************************************************* PP

                   HHHHHH CS
  tRNA-synt_1e 294 elleea 299
                   e+++ a
    CTQ30661.1 307 ENIHLA 312
                   ***976 PP

>> DALR_2  DALR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.9     2e-26   7.2e-23       1      63 []     340     401 ..     340     401 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 2e-26
                 HHHHHHTBT--HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHGGGT-S-S-HHHH- CS
      DALR_2   1 kFeeaMdDDFNTaeAiavlFelakeiNralkeedkaaasalkallrelaevLGllqeepeafl 63 
                 +F+eaMdDDFNT++A+a lFel +eiNr l +++ ++a+al+++l++l++vLGll+++++afl
  CTQ30661.1 340 RFCEAMDDDFNTPQALAILFELTREINR-LCGTNDDEAAALATTLKDLGNVLGLLEQSADAFL 401
                 7***************************.******************************9997 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   7.4e-11   2.7e-07      14      83 ..      36     105 ..      28     135 .. 0.95
   2 !   23.7   0.0     5e-09   1.8e-05     310     368 ..     249     306 ..     227     314 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 7.4e-11
                   --HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT- CS
  tRNA-synt_1g  14 lHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklni 83 
                    HlGh+++ ++ D+++Ry r rg++v+fv        +i ++A++ g + + l+e++ +e++ +f+kl+i
    CTQ30661.1  36 CHLGHARTFVAFDMIVRYLRFRGYDVTFVRNITDIDDKIIQRARDTGEDWRSLTERMVHEMHIDFAKLGI 105
                   7*****************************999999******************************9998 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 5e-09
                   ---S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-H CS
  tRNA-synt_1g 310 klpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDldfsw 368
                     ++    ++++tv+ +K+SkS +++ + +++l+r+da+ +R++l++++   k l++s+
    CTQ30661.1 249 PYVNYWLHTGMVTVNKEKMSKSLNNFFTLRDILNRFDAQSVRFFLLSAHY-RKPLNYSE 306
                   5566667899***********************************98653.34555555 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0   0.00048       1.7      38      66 ..      36      64 ..      29      71 .. 0.92
   2 !   22.4   0.0     9e-09   3.2e-05     518     600 ..     222     303 ..     215     305 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00048
  tRNA-synt_1 38 lHiGhalaktlkdivirykrmkGkevlyv 66
                  H+Gha + +  d+++ry r++G++v++v
   CTQ30661.1 36 CHLGHARTFVAFDMIVRYLRFRGYDVTFV 64
                 6*************************997 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 9e-09
  tRNA-synt_1 518 dmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltlilsdvgrdin 600
                  d+   G+D i+   ++ i +s+   ++ P+ +  +h  ++  +  KmSKsl N     d++++  a+++R++l+++++ + +n
   CTQ30661.1 222 DIHGGGSDLIFPHHENEIAQSTSA-NDGPYVNYWLHTGMVTVNKEKMSKSLNNFFTLRDILNRFDAQSVRFFLLSAHYRKPLN 303
                  666779999999999999999975.6789*999888777777889*****************************999987666 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0   0.00073       2.6      29      72 ..      28      71 ..      12      84 .. 0.88
   2 !   14.0   0.0   5.1e-06     0.018     274     316 ..     260     301 ..     205     336 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00073
  tRNA-synt_1f 29 sGispSGliHiGnlrevltadlvaralrkrgeevrlilisDdmD 72
                   G+++  l H+G +r  +  d+++r lr rg +v ++  + d+D
    CTQ30661.1 28 CGVTVYDLCHLGHARTFVAFDMIVRYLRFRGYDVTFVRNITDID 71
                  588888899************************99998888888 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 5.1e-06
  tRNA-synt_1f 274 illkggekmssSkGnvltledwlevaepevlrflilrrkPkka 316
                   ++++ +ekms+S  n++tl+d+l+    +++rf++l+++ +k 
    CTQ30661.1 260 VTVN-KEKMSKSLNNFFTLRDILNRFDAQSVRFFLLSAHYRKP 301
                   4444.55***************************998665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3541.71
//
Query:       CTQ30662.1  [L=150]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-10   39.7   0.6    1.4e-09   38.1   0.0    1.8  2  FUR             Ferric uptake regulator family
     0.0011   18.6   0.5      0.002   17.8   0.5    1.5  1  SNCAIP_SNCA_bd  Synphilin-1 alpha-Synuclein-binding domain
  ------ inclusion threshold ------
       0.03   14.3   0.0      0.057   13.4   0.0    1.5  1  PadR            Transcriptional regulator PadR-like family
       0.13   12.2   0.8       0.47   10.4   0.1    2.0  2  Gin             Inhibitor of sigma-G Gin
       0.14   11.8   7.0          1    9.0   0.1    2.9  3  zf_UBZ          Ubiquitin-Binding Zinc Finger
       0.27   10.8   1.6         13    5.4   0.1    2.5  2  Sgf11           Sgf11 (transcriptional regulation protein)
       0.36   10.7   2.6        1.3    9.0   0.0    2.2  2  RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit


Domain annotation for each model (and alignments):
>> FUR  Ferric uptake regulator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   5.6e-13   1.4e-09       2     106 ..      18     120 ..      17     136 .. 0.90
   2 ?    1.0   0.2      0.17   4.3e+02      57      90 ..     118     148 ..     112     149 .. 0.68

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 5.6e-13
                 TTHCHHHHHHHHHHHHHHHSSSBEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESSSSSEEEEEETTT--EEEE--HHHHHH CS
         FUR   2 aglklTkqRekilevlekseehlsaeevykelkeedpeislaTVYrtLklleeaglvkelefedgesryelakkehhdhlicekCgkviefkddeieki 100
                 +gl++T++ ++ l+ le+  + +s ++++++l e+ p+    T+Yr+L+ l ++ +v++ + +  ++r+ l+++     + c +C +vi +++d   + 
  CTQ30662.1  18 HGLRATPSTLATLQCLEHASQAMSHDDLTQQLGEQAPD--RVTLYRILERLMQVSIVQRYTDSARTQRFALTQRAAVGLFECDNCHHVIPIEQDPALEA 114
                 69**********************************98..78*************************************************99876666 PP

                 HHHHHH CS
         FUR 101 qeeiae 106
                 + e ++
  CTQ30662.1 115 AIELVK 120
                 555554 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.17
                 SEEEEEETTSEEEEEESSSSSEEEEEETTT--EE CS
         FUR  57 lvkelefedgesryelakkehhdhlicekCgkvi 90 
                 lvk++ + +g +  e++      h ic +C+++i
  CTQ30662.1 118 LVKSHLTGHGMTEREITL---SSHGICPDCNRTI 148
                 566666665655555553...5689*****9986 PP

>> SNCAIP_SNCA_bd  Synphilin-1 alpha-Synuclein-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.5   7.9e-07     0.002       4      38 ..      32      69 ..      30      81 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.9e-07
  SNCAIP_SNCA_bd  4 CmSLASQVV...KLTKQLkEQTaeRInlQkhlQrLlea 38
                    C+  ASQ      LT QL EQ  +R+ l + l rL++ 
      CTQ30662.1 32 CLEHASQAMshdDLTQQLGEQAPDRVTLYRILERLMQV 69
                    7777888874445***********************96 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.2e-05     0.057      20      68 ..      46      89 ..      32      94 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.2e-05
                HCCSTT-CCTTHHHHHHHHHHHHHTTSEEEEEE-STSSS-EEEEEESHC CS
        PadR 20 eelsegllelseGslYpaLkrLekeglveseweesgegpprkyYrlTda 68
                ++ + g+ ++   +lY++L+rL +  +v+++ + +    +++ ++lT++
  CTQ30662.1 46 TQQL-GEQAPDRVTLYRILERLMQVSIVQRYTDSA----RTQRFALTQR 89
                4443.55789999******************8865....7788888876 PP

>> Gin  Inhibitor of sigma-G Gin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.46   1.2e+03      18      27 ..      95     104 ..      92     106 .. 0.77
   2 ?   10.4   0.1   0.00018      0.47      11      28 ..     132     149 ..     127     150 .] 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.46
                 -EEHHHHHHH CS
         Gin  18 fICeeCekki 27 
                 f C++C++ i
  CTQ30662.1  95 FECDNCHHVI 104
                 55****9876 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00018
                 EE-SSS--EEHHHHHHHH CS
         Gin  11 GiiilgkfICeeCekkiv 28 
                  i++ ++ IC +C++ i+
  CTQ30662.1 132 EITLSSHGICPDCNRTIT 149
                 599************998 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2      0.61   1.6e+03      15      22 ..      37      44 ..      31      45 .. 0.75
   2 ?    9.0   0.1    0.0004         1       3      16 ..      95     108 ..      93     110 .. 0.87
   3 ?    6.0   0.2    0.0034       8.6       4      12 ..     140     148 ..     137     150 .] 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.61
      zf_UBZ 15 selqEHeD 22
                s+  +H+D
  CTQ30662.1 37 SQAMSHDD 44
                47889999 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0004
      zf_UBZ   3 ylCerCgkeipese 16 
                 + C+ C++ ip+++
  CTQ30662.1  95 FECDNCHHVIPIEQ 108
                 89*********975 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0034
      zf_UBZ   4 lCerCgkei 12 
                 +C++C+++i
  CTQ30662.1 140 ICPDCNRTI 148
                 7*****998 PP

>> Sgf11  Sgf11 (transcriptional regulation protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.012        30       4      11 ..      94     101 ..      91     104 .. 0.85
   2 ?    5.4   0.1    0.0051        13       7      15 ..     141     149 ..     136     150 .] 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.012
                 EEE-TTTS CS
       Sgf11   4 yvtCpnCg 11 
                 +++C+nC 
  CTQ30662.1  94 LFECDNCH 101
                 69*****6 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0051
                 -TTTSSEEE CS
       Sgf11   7 CpnCgRqia 15 
                 Cp C+R+i 
  CTQ30662.1 141 CPDCNRTIT 149
                 *******95 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00051       1.3      22      35 ..      95     108 ..      86     109 .. 0.81
   2 ?    0.4   1.7      0.24   6.2e+02       4       8 ..     141     145 ..     141     146 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00051
                     EEESSSS-EEESSC CS
  RNA_POL_M_15KD  22 feCrqCgYeepadq 35 
                     feC++C  + p++q
      CTQ30662.1  95 FECDNCHHVIPIEQ 108
                     9**********998 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.24
                     ESTTT CS
  RNA_POL_M_15KD   4 CpkCg 8  
                     Cp+C+
      CTQ30662.1 141 CPDCN 145
                     ****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1142.77
//
Query:       CTQ30663.1  [L=399]
Description: conserved hypothetical protein [Klebsiella pneumoniae]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-25   88.5   0.0    5.8e-25   87.9   0.0    1.3  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
    1.7e-18   66.3   0.0    3.3e-18   65.4   0.0    1.5  1  CobW_C           Cobalamin synthesis protein cobW C-terminal 
    1.2e-05   25.3   0.0    1.9e-05   24.6   0.0    1.3  1  MobB             Molybdopterin guanine dinucleotide synthesis
     0.0004   20.9   0.0    0.00074   20.1   0.0    1.5  1  AAA_18           AAA domain
    0.00046   20.5   0.3      0.002   18.4   0.0    2.1  2  AAA_22           AAA domain
      0.001   19.5   0.4     0.0049   17.3   0.2    2.3  1  AAA_16           AAA ATPase domain
     0.0017   17.4   0.0     0.0028   16.7   0.0    1.2  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0032   17.5   0.1     0.0063   16.5   0.1    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0042   16.0   0.1      0.029   13.3   0.0    2.0  2  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
     0.0093   15.4   0.2       0.02   14.4   0.1    1.6  1  SRPRB            Signal recognition particle receptor beta su
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.019   15.1   0.0    1.4  1  AAA_33           AAA domain
      0.016   14.3   0.1      0.025   13.6   0.1    1.3  1  T2SSE            Type II/IV secretion system protein
      0.017   15.0   0.2       0.12   12.3   0.0    2.3  2  NACHT            NACHT domain
      0.018   15.1   0.3       0.11   12.5   0.1    2.3  2  AAA_14           AAA domain
      0.029   14.0   0.1      0.081   12.5   0.1    1.7  1  SRP54            SRP54-type protein, GTPase domain
      0.046   13.5   0.0        0.1   12.4   0.0    1.6  1  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.064   13.2   0.0          5    7.0   0.0    2.3  2  ATPase_2         ATPase domain predominantly from Archaea
      0.074   12.8   0.0       0.12   12.1   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.077   12.7   0.0       0.17   11.5   0.0    1.6  1  Guanylate_kin    Guanylate kinase
      0.078   12.3   0.0       0.18   11.0   0.0    1.5  1  Zeta_toxin       Zeta toxin
      0.081   12.4   0.0       0.12   11.8   0.0    1.3  1  KTI12            Chromatin associated protein KTI12
      0.092   12.1   0.1       0.13   11.6   0.1    1.2  1  DnaB_C           DnaB-like helicase C terminal domain
       0.13   11.5   0.0       0.18   11.0   0.0    1.3  1  KAP_NTPase       KAP family P-loop domain
       0.13   11.9   0.0       0.25   11.0   0.0    1.4  1  AAA_30           AAA domain
       0.14   12.7   0.0       0.24   11.9   0.0    1.5  1  ABC_tran         ABC transporter
       0.18   12.3   0.2        1.3    9.5   0.1    2.4  2  AAA              ATPase family associated with various cellul


Domain annotation for each model (and alignments):
>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   8.4e-28   5.8e-25       1     175 [.       5     203 ..       5     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 8.4e-28
                 EEEEEEESTTCCHHHHHHHHH..CT--SS-EEEEESS-SSCHCCCCCCHCCCT.......EEEETTTTECCH.CTT-HHHHHHHHHHHHTT-SEEEEEE CS
        cobW   1 pvtvltGflGsGKTtLlnhll..enraglklavivNefgevsiDaellretgve......ivelenGciCct.lredllkelealeereerldviliEt 90 
                 p ++l GflG+GKTtLl++ll  ++++ + + vivN+++e+++D+ l+++t+         v+++   i      ++l  +l++l+e++ + d il+Et
  CTQ30663.1   5 PLIILNGFLGAGKTTLLKNLLtqAHKRRMTVSVIVNDMSELDVDGVLIANTEIVdaasnnFVSISADSISSRsGIQKLDSALKNLLEKR-SADFILLET 102
                 6789*****************655556667889***************888444456677*********999778999***********.9******** PP

                 CTTTTHHHHHTTSHHHHHCCCECEEEEEEETTTH...................CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHHHHHHHHHHT CS
        cobW  91 tGlaePapvafteeelksdltldavvavvDaknl..................eaeeekieekaedqlaaadllvlnKtDlldeeallekleerlrqlnp 171
                 +G ++P p++ +  + ++++ l+a + +vD   l                  ++ ++  e+++ +q+ +++ l+l+K D l+    ++++++ ++ lnp
  CTQ30663.1 103 SGSSHPLPLV-RYLREHTQVSLKAFLSLVDTVMLnddydggkklipvfqehlNKGTRGVESLLAEQIMFCNKLLLTKNDRLPFY-VVTEVARAIHPLNP 199
                 *********3.33333468999999999999888999**************999999*************************99.56999999999999 PP

                 TS-E CS
        cobW 172 eakv 175
                 ++ +
  CTQ30663.1 200 QVAI 203
                 8876 PP

>> CobW_C  Cobalamin synthesis protein cobW C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   4.8e-21   3.3e-18       5      94 .]     256     372 ..     252     372 .. 0.96

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 4.8e-21
      CobW_C   5 vfrarrpfdperleelleeelpegilRaKGivwlagkpd.alvlqgvggrlrlepagawwaa..........................ededrrseLVf 76 
                 v++++rpf+p+rl++ ++  +++g++R+KG++wl+g++d al+++++ g+++le  + w+a                           +++drr +L +
  CTQ30663.1 256 VIEDDRPFHPQRLWDTCHCFMGAGVYRSKGFFWLPGRDDlALLWNQAAGSINLEFISYWKAGvlthtdnsltkeeraairqqlakmpgRFGDRRCRLTV 354
                 899****************99*********************************99999999************************************* PP

      CobW_C  77 IGrdldkealeeaLdacl 94 
                 IG++ + + +  aL++cl
  CTQ30663.1 355 IGESGEIDDFALALRQCL 372
                 ***999999999999997 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.7e-08   1.9e-05       3      97 ..       8     101 ..       6     128 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.7e-08
        MobB   3 givgksgsGKTtLleklipelkarglrvgtiKhahhgfdvdkpgkDsyrhrkAGAkevlvaskerlalikeleeaelsleellarlsevDlvlvE 97 
                  + g+ g+GKTtLl++l+++ ++r ++v++i  +  ++dvd       ++ +A +++ + +s +++   + +++ + +l++ll++  ++D++l E
  CTQ30663.1   8 ILNGFLGAGKTTLLKNLLTQAHKRRMTVSVIVNDMSELDVDGVLIANTEIVDAASNNFVSISADSISSRSGIQKLDSALKNLLEKR-SADFILLE 101
                 567999***********************************999999999999999999999999998888888888999999887.69999998 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.1e-06   0.00074       1      69 [.       7      94 ..       7     144 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.1e-06
      AAA_18  1 IlltGtpGvGKttlakeL.....skrlgf....................gvnlrdvakenglllevdpealdeskrldedkldklldaleenss 69
                I+l+G  G+GKttl k+L     ++r  +                     +++ d a++n  +++ d      s r  ++kld++l++l e +s
  CTQ30663.1  7 IILNGFLGAGKTTLLKNLltqahKRR--MtvsvivndmseldvdgvliaNTEIVDAASNNFVSISADSI----SSRSGIQKLDSALKNLLEKRS 94
                9*****************88654222..12344555555555555555555555555555555555555....555555555555555555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.9e-06     0.002       6      70 ..       5      92 ..       1     129 [. 0.62
   2 ?   -1.1   0.1       3.1   2.1e+03      92     102 ..     226     236 ..     212     248 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.9e-06
      AAA_22  6 gilvvtGesGtGKTtllrrlleqldeeakaee................erpevv......fvtlpsst.sskdllrellralglelka 70
                 ++++ G  G+GKTtll++ll q++++                     ++ e+v      fv +++++ ss++  ++l +al++ l++
  CTQ30663.1  5 PLIILNGFLGAGKTTLLKNLLTQAHKRRMTVSvivndmseldvdgvliANTEIVdaasnnFVSISADSiSSRSGIQKLDSALKNLLEK 92
                679999******************8643322255555555555555553333333333334444444444555555555555554444 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.1
      AAA_22  92 ielliiDEaqh 102
                 +++l+iDE q 
  CTQ30663.1 226 RVALLIDELQD 236
                 5799****997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2     7e-06    0.0049      23     106 ..       3     103 ..       1     244 [. 0.70

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellralekd.................ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleea 104
                 r++l++l G  G GK++l++ ll+++ k+                 g++ ++++ ++  s+   s+ a+ ++ ++ +++l++++++ +  + +++++ +
  CTQ30663.1   3 RTPLIILNGFLGAGKTTLLKNLLTQAHKRrmtvsvivndmseldvdGVLIANTEIVDAASNNFVSISADSISSRSGIQKLDSALKNLLEKRSADFILLE 101
                 6799***********************997777777777777777444445555555544444455888888888888888886665555555555555 PP

      AAA_16 105 la 106
                 ++
  CTQ30663.1 102 TS 103
                 44 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     4e-06    0.0028      31     132 ..       6     105 ..       2     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4e-06
                 EEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE------------------HCCCTSTTEEEEEE-----HHHHHHHHHHHHHHHHHTT-SEEEEEE CS
        MeaB  31 vvGltGvPGaGkstlvealglelrrrGkrvavlavDPsspftGGsilGDklRleelavdegvfiRslpsrGalGGlaaktrevvllleaaGfDvvliet 129
                  + l G+ GaGk tl+++l ++  +r   v+v+  D s     G ++ + + + + a ++ v i s  s     G+ +   ++ +lle    D +l+et
  CTQ30663.1   6 LIILNGFLGAGKTTLLKNLLTQAHKRRMTVSVIVNDMSELDVDGVLIAN-TEIVDAASNNFVSI-SADSISSRSGIQKLDSALKNLLEKRSADFILLET 102
                 56789****************************9999888888877765.55555444444444.55566778899999999***************** PP

                 ESS CS
        MeaB 130 vGv 132
                  G 
  CTQ30663.1 103 SGS 105
                 985 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   9.2e-06    0.0063      21      44 ..       6      29 ..       1      37 [. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 9.2e-06
                EEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE 21 vilLeGdLGaGKTtlvrglakalg 44
                +i+L+G LGaGKTtl ++l+ + +
  CTQ30663.1  6 LIILNGFLGAGKTTLLKNLLTQAH 29
                699***************998875 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   4.3e-05     0.029      18      50 ..       7      41 ..       2      48 .. 0.82
   2 ?    0.4   0.0      0.35   2.4e+02     226     253 ..     208     235 ..     137     241 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.3e-05
  TrwB_AAD_bind 18 ilivGttGsGKtqalekllrairarg..draivlD 50
                   i+++G  G+GKt+ l++ll+++ +r     +iv D
     CTQ30663.1  7 IILNGFLGAGKTTLLKNLLTQAHKRRmtVSVIVND 41
                   7899*******************998323455555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.35
  TrwB_AAD_bind 226 wldlaikallslpesrerrlWfflDElp 253
                    w +l   +lls+p+ +  r+ +++DEl+
     CTQ30663.1 208 WGNLQLDELLSMPDYDFHRVALLIDELQ 235
                    66888999******************97 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   2.8e-05      0.02       2      55 ..       3      59 ..       2      81 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.8e-05
                ---EEEEE-STTSSHHHHHHHHHHS.S---B---S..S-EEETTG...GGTT-SEEE CS
       SRPRB  2 skpavllvGlsdsGKTslftrLttd.svkktvtSq..essaalkvksekgskltliD 55
                ++p ++l G   +GKT+l++ L+t+ ++++  +S+  + ++ l+v++    +++++D
  CTQ30663.1  3 RTPLIILNGFLGAGKTTLLKNLLTQaHKRRMTVSVivNDMSELDVDGVLIANTEIVD 59
                57899**************99998843344444443444455566666666666666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   2.7e-05     0.019       1      38 [.       6      43 ..       6      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.7e-05
      AAA_33  1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlf 38
                l++l G  G+GK+tl+++ll + +  + +  ++ + + 
  CTQ30663.1  6 LIILNGFLGAGKTTLLKNLLTQAHKRRMTVSVIVNDMS 43
                799****************9988855555555555554 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   3.6e-05     0.025     130     174 ..       5      50 ..       1      69 [. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.6e-05
       T2SSE 130 glilvsGgTgsGKttllyallkeinksderi.vtvEDpvEiqlega 174
                  li++ G  g GKttll  ll++ +k+   + v+v D  E++++g+
  CTQ30663.1   5 PLIILNGFLGAGKTTLLKNLLTQAHKRRMTVsVIVNDMSELDVDGV 50 
                 589*******************9999955443789*****999876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00017      0.12       2      28 ..       6      32 ..       5      46 .. 0.90
   2 ?   -0.7   0.0       1.8   1.2e+03     101     150 ..      78     126 ..      57     129 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00017
                CEEEEC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegk 28
                l+il+G  G GKTtLl+ l +++ +++
  CTQ30663.1  6 LIILNGFLGAGKTTLLKNLLTQAHKRR 32
                689*****************9998876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.8
                 ........HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE..EEEE-- CS
       NACHT 101 ekqpvrtlLselirkkllpeasllltvrpralrdleeqleeaivlevegf 150
                 + q+++  L++l++k +     ll t+ ++    l ++l+e + + +++f
  CTQ30663.1  78 GIQKLDSALKNLLEKRSADF-ILLETSGSSHPLPLVRYLREHTQVSLKAF 126
                 44788899999999943333.33334444455568888888877777777 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00016      0.11       3      97 ..       5      99 ..       3     110 .. 0.60
   2 ?   -0.9   0.0       2.3   1.6e+03      64      78 ..     225     239 ..     209     243 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00016
      AAA_14  3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev...pewekalkslvdegknldviv 97
                +++++ G   +GKTtllk+l+ +   k++ ++ + ++d ++ + +     +++i + +++ +   +  D i+     +++ +alk+l++++   d+i+
  CTQ30663.1  5 PLIILNGFLGAGKTTLLKNLLTQAH-KRRMTVSVIVNDMSELDVDGVLIANTEIVDAASN-NFVSISADSISSRsgiQKLDSALKNLLEKR-SADFIL 99
                57899***************98888.4555555555554444333221233444443333.344466677776433366777788888877.445554 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.3
      AAA_14  64 kktylflDEiqevpe 78 
                 ++  l++DE q + +
  CTQ30663.1 225 HRVALLIDELQDAID 239
                 567799****98766 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00012     0.081       3      96 ..       6     107 ..       4     138 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
                 EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEE.......SSTTSCHHHHHHHHHHHH.HHTTSSEEEEEE-- CS
       SRP54   3 villvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvik.......kkeeadpaavakeaveka.keekidvvlvDTaG 93 
                 +i+l G+ GaGKTt l  L  + +k+ ++v ++  D+        L +++e +++   +       + + ++ ++ +  a+++  +++++d++l+ T+G
  CTQ30663.1   6 LIILNGFLGAGKTTLLKNLLTQAHKRRMTVSVIVNDMSELDVDGVLIANTEIVDAASNNfvsisadSISSRSGIQKLDSALKNLlEKRSADFILLETSG 104
                 58999*************************999999876554444444443333222112112222222334555555666554134457888888888 PP

                 SST CS
       SRP54  94 rlq 96 
                  ++
  CTQ30663.1 105 SSH 107
                 665 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014       0.1       4      67 ..       7      73 ..       1      87 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
   PduV-EutP  4 illiGkvgsGKttLtqalkgeelkYkktqaiefsdev.iDtPGeylenrklysal..ivtsaeadvi 67
                i+l G  g+GKttL ++l  ++ k + t ++ ++d+  +D  G  + n ++  a   + +s++ad i
  CTQ30663.1  7 IILNGFLGAGKTTLLKNLLTQAHKRRMTVSVIVNDMSeLDVDGVLIANTEIVDAAsnNFVSISADSI 73
                8999*************************99999987799999999999888765223456666655 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0072         5      22     110 ..       6      90 ..       1  
[file cut: first 33554432 bytes kept]
[document cut: first 32369030 of 33554424 characters kept]
